seqnames start end width strand genes Bf N.BAF sd.BAF depth.ratio N.ratio sd.ratio CNt A B LPP ID chr1 14653 1564712 1550060 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, NA NA NA NA NA NA NA NA NA LTS-001 PERM1, TNFRSF18, ISG15) 0.228043783833205 77 0.0634475714801276 0.859381321461814 2790 0.217093700781494 3 3 0 -7.00666466156572 LTS-001 NA NA NA NA LTS-001 chr1 1564713 1565776 1064 * MIB2 NA 0 NA 0.865245731245804 12 0.0985301061512765 2 NA NA -5.76511626091675 LTS-001 chr1 1565777 1575836 10060 * c(MIB2, MMP23B, CDK11B) 0.448 1 NA 1.14182790614401 49 0.58858190510209 4 4 0 -5.76441044353015 LTS-001 chr1 1575837 1593768 17932 * c(SLC35E2B, CDK11B) 0.387394779148998 6 0.0950005263143315 1.02571143729004 99 0.670832166421737 3 2 1 -6.74360741375847 LTS-001 chr1 1593769 1593784 16 * c(SLC35E2B, CDK11B) NA 0 NA 1.334 1 NA NA NA NA NA LTS-001 chr1 1593785 1597446 3662 * c(SLC35E2B, CDK11B) 0.186842837913517 2 0.0678822509939086 1.43696035357606 81 0.390118741815937 9 8 1 -6.73556789152487 LTS-001 chr1 1597447 1599762 2316 * c(SLC35E2B, CDK11B) NA 0 NA 0.639 1 NA NA NA NA NA LTS-001 chr1 1599763 1630662 30900 * c(SLC35E2B, CDK11B) 0.399655337025504 2 0.0494974746830583 0.542003868551228 51 0.425022573794962 3 2 1 -6.76680970815175 LTS-001 chr1 1630663 1630675 13 * c(SLC35E2B, CDK11B) NA 0 NA 1.106 1 NA NA NA NA NA LTS-001 chr1 1630676 1636501 5826 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.233 1 NA 1.27589565110429 50 0.549113257712759 5 5 0 -5.76443009282137 LTS-001 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.022 1 NA NA NA NA NA LTS-001 chr1 1637054 1645523 8470 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.339257544772541 39 0.308058830282431 0 NA NA -5.76650213077073 LTS-001 chr1 1645524 1645592 69 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.765 1 NA NA NA NA NA LTS-001 chr1 1645593 1661807 16215 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.448634227012306 11 0.0324603254338697 0.608554150289169 130 0.391862790110399 2 1 1 -6.85238076474822 LTS-001 chr1 1661808 1846357 184550 * c(CALML6, GNB1, NADK, SLC35E2B, SLC35E2) 0.397636102085457 2 0.0657609306503489 0.898716457172922 204 0.334474184652532 3 2 1 -6.73854952540426 LTS-001 chr1 1846358 1846765 408 * CALML6 0.243 1 NA 0.755138813722512 7 0.219044679069297 2 2 0 -5.76441548813076 LTS-001 chr1 1846766 6653358 4806593 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, CALML6, DFFB, MEGF6, FAAP20, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, MIR551A, TP73, LINC01346, MMEL1, NOL9, NA NA NA NA NA NA NA NA NA LTS-001 MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PLCH2, CEP104, KLHL21) 0.238717652239645 161 0.0537501762238914 0.890511642396577 4662 0.334403266749015 3 3 0 -7.00658306677379 LTS-001 NA NA NA NA LTS-001 chr1 6653359 6653465 107 * KLHL21 NA 0 NA 0.748 1 NA NA NA NA NA LTS-001 chr1 6653466 16802521 10149056 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, CROCCP3, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, PHF13, C1orf64, SLC2A7, DFFA, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, SZRD1, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, NA NA NA NA NA NA NA NA NA LTS-001 PRAMEF10, FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, FBLIM1, CASZ1, TMEM51, VPS13D, NECAP2, DNAJC11, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, KLHL21, MFN2) 0.25495409429362 331 0.0768791051851026 0.845955957178728 10790 0.63614814641508 2 2 0 -6.84075333230669 LTS-001 NA NA NA NA LTS-001 chr1 16802522 16802550 29 * CROCCP3 NA 0 NA 0.719 1 NA NA NA NA NA LTS-001 chr1 16802551 16809946 7396 * CROCCP3 0.1 1 NA 0.595658955432124 9 0.23133309317951 1 1 0 -5.76441039917929 LTS-001 chr1 16809947 16862454 52508 * CROCCP3 0.443 1 NA 0.690964026221337 2 0.231931024229188 2 2 0 -5.77300747845463 LTS-001 chr1 16862455 16975831 113377 * c(MST1P2, NBPF1, CROCCP2) 0.400271711572965 21 0.0723000032931567 0.601560409966852 84 0.254654456070491 2 1 1 -6.9327435996628 LTS-001 chr1 16975832 16975852 21 * MST1P2 NA 0 NA 0.342 1 NA NA NA NA NA LTS-001 chr1 16975853 16978916 3064 * MST1P2 0.263179332420324 5 0.165504380606678 0.337421896762433 89 0.309765273667294 2 2 0 -6.74652399562106 LTS-001 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.747 1 NA NA NA NA NA LTS-001 chr1 17009684 17198553 188870 * c(MST1L, ESPNP, CROCC) 0.304972452104601 39 0.121428908242992 0.950482045225755 292 0.334768666125887 4 3 1 -6.81719348828613 LTS-001 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.455 1 NA NA NA NA NA LTS-001 chr1 17248433 17273493 25061 * CROCC 0.349906401271999 8 0.10557115068589 1.35732093593603 74 0.435075768231448 4 3 1 -6.74085256490766 LTS-001 chr1 17273494 17274945 1452 * CROCC NA 0 NA 1.56644027775997 5 0.427495380091996 6 NA NA -5.76441581764575 LTS-001 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.877 1 NA NA NA NA NA LTS-001 chr1 17275408 17281268 5861 * CROCC 0.25 1 NA 0.822183753722386 19 0.273644805417833 2 2 0 -5.76454019103732 LTS-001 chr1 17281269 19282392 2001124 * c(MIR4695, PADI2, IFFO2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.240768869835185 33 0.0379876873992007 0.920567119039337 1816 0.453453385482843 3 3 0 -7.01675467932324 LTS-001 chr1 19282393 24935829 5653437 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, RCAN3, LYPLA2, CNR2, IFFO2, MYOM3, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LOC284632, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, NA NA NA NA NA NA NA NA NA LTS-001 NCMAP, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PNRC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.242671727505049 171 0.0745294330778709 0.863693318917266 7875 0.230717477987671 2 2 0 -7.38427050318522 LTS-001 NA NA NA NA LTS-001 chr1 24935830 24969499 33670 * character(0) NA 0 NA 0.53 1 NA NA NA NA NA LTS-001 chr1 24969500 25599166 629667 * c(SRRM1, CLIC4, SYF2, RSRP1, RHD, RUNX3) 0.232257052306696 8 0.0939725453827568 0.75069514439023 468 0.22144865478856 2 2 0 -6.81639780946284 LTS-001 chr1 25599167 25656954 57788 * c(RSRP1, RHD) 0.252 1 NA 1.20263068577518 74 0.29634489147894 4 4 0 -5.76530718809132 LTS-001 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.926 1 NA NA NA NA NA LTS-001 chr1 25666924 33272294 7605371 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, DCDC2B, LINC01225, PDIK1L, PAQR7, FAM76A, TXLNA, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, HMGN2, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, NA NA NA NA NA NA NA NA NA LTS-001 STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ZBTB8B, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.255129054239423 136 0.0571111346354317 0.787570566839687 9462 0.216227981584055 2 2 0 -6.7599969024331 LTS-001 NA NA NA NA LTS-001 chr1 33272295 33276201 3907 * YARS NA 0 NA 1.209 1 NA NA NA NA NA LTS-001 chr1 33276202 33283583 7382 * c(S100PBP, YARS) 0.333 1 NA 0.827969368650928 27 0.195776938597501 2 2 0 -5.76482111543564 LTS-001 chr1 33283584 33324088 40505 * c(S100PBP, YARS) 0.485 1 NA 0.902707515868837 91 0.225813423152172 3 3 0 -5.76642346347462 LTS-001 chr1 33324089 43885575 10561487 * c(LOC100129924, NFYC-AS1, MIR4255, MIR3659, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, MED8, SMIM12, AZIN2, TMEM54, ERMAP, CSMD2, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, TMEM125, COL8A2, COL9A2, CSF3R, ZNF362, MANEAL, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, PHC2, AGO3, AGO4, SLFNL1, AK2, FHL3, FOXJ3, SCMH1, NA NA NA NA NA NA NA NA NA LTS-001 NCDN, SZT2, MACF1, FNDC5, MYCBP, HEYL, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HPCA, LINC01343, TFAP2E, ZFP69, BMP8A, INPP5B, SVBP, CSMD2-AS1, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, TRIM62, PPT1, MAP7D1, PSMB2, DLGAP3, HIVEP3, RLF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CLSPN, OXCT2, RRAGC, P3H1, SFPQ, KIAA0754, SMAP2, S100PBP, MEAF6, EXO5, ELOVL1, MRPS15, SLC2A1, ZFP69B, LOC653160, BMP8B, SNORA55, TIE1, LINC01137, PPIEL, CCDC30, ZSCAN20, DNALI1, C1orf50, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, C1orf94, PABPC4, KCNQ4, ZMYM4, ZMYM6, RIMS3, CDC20, THRAP3) 0.386171856526952 181 0.0898803983284634 0.976400093098976 11780 0.232149189538296 3 2 1 -6.76837432841832 LTS-001 NA NA NA NA LTS-001 chr1 43885576 43885839 264 * SZT2 NA 0 NA 1.124 1 NA NA NA NA NA LTS-001 chr1 43885840 44684910 799071 * c(KDM4A-AS1, KLF17, CCDC24, DPH2, SZT2, ATP6V0B, DMAP1, PTPRF, ST3GAL3, SLC6A9, HYI, B4GALT2, ARTN, IPO13, KDM4A) 0.364741625236523 27 0.0388392479263847 1.10949130996192 1466 0.239780732941816 4 3 1 -6.98100466699394 LTS-001 chr1 44684911 44685004 94 * DMAP1 NA 0 NA 0.672 1 NA NA NA NA NA LTS-001 chr1 44685005 84331773 39646769 * c(EFCAB14-AS1, LINC01135, ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR761, MIR3117, MIR3671, MKNK1-AS1, LOC100507564, LOC100507634, FPGT-TNNI3K, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR548AP, MIR5584, NEGR1-IT1, ZRANB2-AS2, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, IFI44, IFI44L, KIF2C, DNAJB4, FAF1, HHLA3, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, ASB17, NA NA NA NA NA NA NA NA NA LTS-001 TYW3, ERICH3, LRRIQ3, DMBX1, TCEANC2, PODN, C1orf87, CPT2, CRYZ, UBE2U, KNCN, MOB3C, GLIS1, MGC27382, CTH, IL23R, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, TCTEX1D1, SLC44A5, AK4, EPS15, FAAH, TTC39A, FOXE3, USP33, FOXD2, MAST2, SLC35D1, ADGRL2, ZCCHC11, USP24, ITGB3BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SSBP3, PCSK9, ST6GALNAC3, NEGR1, PARS2, MMACHC, ZZZ3, ACOT11, CYP4X1, SERBP1, AK5, BEST4, SNORD45B, SNORD45A, SNORD55, RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, FAM151A, C1orf228, ACADM, TCTEX1D4, FAM159A, IL12RB2, IPP, JAK1, JUN, TEX38, MROH7, MIGA1, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LEPR, LINC01144, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, LHX8, ZYG11A, MSH4, MUTYH, NASP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TNNI3K, TMEM69, MRPL37, HOOK1, PDE4B, HSPB11, CMPK1, PGM1, PIN1P1, LURAP1, YIPF1, SPATA6, L1TD1, LEPROT, GIPC2, C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, POMGNT1, PRKAA2, LRRC40, DEPDC1, NDC1, DMAP1, GNG12, PTGER3, PTGFR, LRRC7, ZSWIM5, CACHD1, MIER1, RAB3B, RABGGTB, GPBP1L1, CYB5RL, RPE65, RPS8, SCP2, DMRTB1, DMRTA2, ADGRL4, ATPAF1, STIL, SLC1A7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 COA7, TAL1, SNORD45C, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, WDR78, WLS, ANKRD13C, ST6GALNAC5, TM2D1, SGIP1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, DOCK7, MKNK1, PLPP3, PTCH2, FPGT, FUBP1, EIF2B3, DIRAS3, BTF3L4, NEXN, SRSF11, ZFYVE9, ZRANB2, SNORD46, SNORD38A, SNORD38B, TMEM59, EFCAB14, DNAJC6 NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ) 0.377613716469485 385 0.077168328564519 1.02765622911211 21415 0.255799165958615 3 2 1 -8.01171126303412 LTS-001 NA NA NA NA LTS-001 chr1 84331774 94041762 9709989 * c(CCDC18-AS1, LINC01364, MIR4423, MIR548AP, GLMN, GBP4, GBP5, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, GBP6, HFM1, DR1, CLCA4, MTF2, KIAA1107, LRRC8B, LPAR3, DDAH1, EPHX4, MCOLN2, COL24A1, GBP1, GBP2, GBP3, GFI1, SNORA66, GNG5, ZNF326, BTBD8, GTF2B, LINC01140, CCDC18, BARHL2, CYR61, GBP7, C1orf146, FAM69A, UOX, GBP1P1, FLJ27354, LINC01555, GEMIN8P4, RBMXL1, TMED5, SH3GLB1, ZNHIT6, FNBP1L, LRRC8D, NA NA NA NA NA NA NA NA NA LTS-001 MCOLN3, PRKACB, PKN2, KYAT3, ODF2L, DNASE2B, SNORD21, RPL5, LOC646626, BRDT, TGFBR3, LOC729930, EVI5, TTLL7, RPAP2, RPF1, CDC7, BCAR3, SYDE2, ZNF644, LRRC8C, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.380107941230568 138 0.0665764379358491 0.975871933590599 6529 0.246966833900986 3 2 1 -6.80184529118771 LTS-001 NA NA NA NA LTS-001 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.242 1 NA NA NA NA NA LTS-001 chr1 94047868 98039523 3991656 * c(MIR760, LOC100129046, TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, FLJ31662, PTBP2, ABCD3, LOC729970, BCAR3, ARHGAP29) 0.371476490977544 30 0.0380262462293986 1.05545140829354 1503 0.263609120609264 3 2 1 -7.32662550910427 LTS-001 chr1 98039524 98058732 19209 * DPYD NA 0 NA 0.819 1 NA NA NA NA NA LTS-001 chr1 98058733 109159065 11100333 * c(LINC01349, LOC100129138, LOC100129620, MIR2682, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, NTNG1, SLC35A3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.381845239807516 47 0.0941684135034547 0.917697433969021 3019 0.244935655120533 3 2 1 -7.00591676536641 LTS-001 chr1 109159066 120927081 11768016 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, MAB21L3, ATXN7L2, C1orf194, HSD3BP4, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, CHIAP2, DENND2C, FNDC7, UBL4B, CELSR2, SPAG17, HIPK1, FCGR1B, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, NA NA NA NA NA NA NA NA NA LTS-001 GNAI3, GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, HIST2H2BA, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, PRPF38B, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 OLFML3, PTGFRN, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, RBM15, DCLRE1B, FAM72B, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, ZNF697, SLC16A4, CD2, CD101, CD53, CD58, LRIG2) 0.391947049304658 291 0.0561471571736267 0.970416052709288 12223 0.373320062605508 3 2 1 -6.74794869997146 LTS-001 NA NA NA NA LTS-001 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.933292378471071 80 0.25573708036214 3 NA NA -5.7679677689066 LTS-001 chr1 143912360 144013853 101494 * FAM72D 0.323 1 NA 0.900174307061275 5 0.284176529643108 3 3 0 -5.7678761493799 LTS-001 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.422341409414771 55 0.0594449240044849 0.984941419269161 521 0.251174364341247 3 2 1 -6.82183954954511 LTS-001 chr1 145075855 145075923 69 * c(NBPF20, PDE4DIP) 0.252 1 NA 0.955807260691765 3 0.098855112833547 3 3 0 -5.76441039183736 LTS-001 chr1 145075924 145285917 209994 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.279063154320553 24 0.0952788432497713 1.15914953896828 243 0.846474542764968 5 4 1 -6.7495836189736 LTS-001 chr1 145285918 145441620 155703 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL) 0.426 1 NA 1.02967880699163 111 0.181276350226705 3 3 0 -5.77699258937375 LTS-001 chr1 145441621 151259543 5817923 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, CD160, VPS45, GABPB2, LIX1L, CIART, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, NA NA NA NA NA NA NA NA NA LTS-001 APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, OTUD7B, PSMD4, LINC00869, ZNF687, PRUNE1, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, VPS72, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.436492583344636 80 0.0836775371382248 1.06589862994627 5658 0.311979588793771 4 2 2 -6.91885177520929 LTS-001 NA NA NA NA LTS-001 chr1 151259544 151259573 30 * ZNF687 NA 0 NA 1.225 1 NA NA NA NA NA LTS-001 chr1 151259574 157803175 6543602 * c(MIR190B, C1orf68, MSTO2P, LOC100132111, C2CD4D, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, TDRKH, CELF3, PMF1, GLMP, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, THEM4, CLK2, TCHHL1, RPTN, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, LCE4A, KRTCAP2, CRTC2, ETV3, FDPS, NA NA NA NA NA NA NA NA NA LTS-001 KIAA0907, FLG, POGZ, SYT11, SMG5, SNAPIN, RUSC1, LCE5A, C1orf43, CHTOP, LCE2B, GBA, GBAP1, SLC39A1, RIIAD1, THEM5, RUSC1-AS1, LAMTOR2, HDGF, S100A7A, LINGO4, RXFP4, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, HRNR, FLG2, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, KPRP, LCE6A, MTX1, MUC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NPR1, NTRK1, CRNN, ZBTB7B, RRNAD1, OAZ3, PI4KB, PKLR, DPM3, CRCT1, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, PSMB4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, CGN, ZNF687, HCN3, RAB13, RFX5, RIT1, HAPLN2, RORC, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A12, S100A13, BGLAP, BCAN, SEMA4A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, MRPL9, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR554, MIR555, MIR92B, THBS3, TCHH, TPM3, CCT3, TUFT1, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, SNX27, ISG20L2, FCRL5, FCRL4, TMEM79, LCE3D, ADAM15, AQP10, SELENBP1, SH2D2A, PYGO2, NUP210L, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11, UBAP2L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 DENND4B) 0.448293417010402 223 0.0829655873979069 1.10682931306901 13722 0.264684459585935 4 2 2 -6.81934725107269 LTS-001 NA NA NA NA LTS-001 chr1 157803176 157803274 99 * CD5L NA 0 NA 1.146 1 NA NA NA NA NA LTS-001 chr1 157803275 158549511 746237 * c(OR10T2, OR6P1, OR10X1, OR10R2, OR10K2, OR10K1, OR6Y1, KIRREL, LOC646268, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.457548179527215 29 0.0432935620192572 1.21239056653988 661 0.405299458071285 4 2 2 -6.91030033276873 LTS-001 chr1 158549512 158549519 8 * OR10X1 NA 0 NA 1.027 1 NA NA NA NA NA LTS-001 chr1 158549520 161277194 2727675 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, NA NA NA NA NA NA NA NA NA LTS-001 SLAMF7, CADM3, PEX19, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.448995541249168 78 0.0803252089579554 1.08360408737166 5093 0.277355794088566 4 2 2 -6.82043294972597 LTS-001 NA NA NA NA LTS-001 chr1 161277195 161279526 2332 * MPZ NA 0 NA 0.927 1 NA NA NA NA NA LTS-001 chr1 161279527 161933157 653631 * c(DUSP12, FCRLB, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ATF6, CFAP126, HSPA6, HSPA7, MPZ, SDHC, RPL31P11, FCRLA, FCGR2C) 0.427957021018176 44 0.0587232148468136 1.00784701019394 820 0.278850526392846 4 2 2 -6.82273738516309 LTS-001 chr1 161933158 162829510 896353 * c(MIR4654, SH2D1B, UHMK1, ATF6, OLFML2B, C1orf111, CCDC190, C1orf226, DDR2, HSD17B7, UAP1, MIR556, NOS1AP) 0.365177670433079 25 0.0500991683231036 1.4587271210284 1006 0.346678217538586 6 4 2 -6.77221683776653 LTS-001 chr1 162829511 163038592 209082 * c(CCDC190, RGS4) NA 0 NA 1.047 1 NA NA NA NA NA LTS-001 chr1 163038593 172387577 9348985 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, DNM3OS, MIR1295B, GPA33, SLC19A2, FMO9P, TADA1, METTL11B, FAM78B, DPT, F5, ALDH9A1, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TIPRL, LINC01142, NME7, SFT2D2, ILDR2, FMO6P, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, MYOC, ATP1B1, PBX1, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, NA NA NA NA NA NA NA NA NA LTS-001 SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, XCL2, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB) 0.446677567397451 128 0.0502908763504325 1.07939968670458 5658 0.298977855141744 4 2 2 -6.99027760365847 LTS-001 NA NA NA NA LTS-001 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 0.901 1 NA NA NA NA NA LTS-001 chr1 172389836 176524652 4134817 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.418786449782768 30 0.147019992385116 1.03021857224377 2274 0.442230754547825 3 2 1 -6.79946320703629 LTS-001 chr1 176524653 179055020 2530368 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TOR3A, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, FAM20B) 0.460160472289343 41 0.026951695724741 1.17279208815804 1553 0.284948429954938 4 2 2 -7.25109078991096 LTS-001 chr1 179055021 179070787 15767 * c(ABL2, TOR3A) 0 1 NA 1.14007059095314 83 0.232333537741175 4 4 0 -5.76441593046119 LTS-001 chr1 179070788 179077574 6787 * ABL2 0 1 NA 1.14758712927939 133 0.449230533750615 4 4 0 -5.76441014823566 LTS-001 chr1 179077575 179077666 92 * ABL2 NA 0 NA 1.106 1 NA NA NA NA NA LTS-001 chr1 179077667 179604864 527198 * c(AXDND1, TDRD5, ABL2, SOAT1, NPHS2) 0.369552068785213 8 0.155453196906887 1.03255025377576 493 0.386867818499954 3 2 1 -6.76606170608304 LTS-001 chr1 179604865 179631242 26378 * TDRD5 0.423 1 NA 0.966770182483194 29 0.246812721925823 3 3 0 -5.76441341971972 LTS-001 chr1 179631243 181479793 1848551 * c(GM140, MIR3121, LHX4-AS1, STX6, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, MR1, IER5, QSOX1, KIAA1614, CACNA1E, ACBD6, LHX4, XPR1, CEP350) 0.430272258342323 47 0.103914346888972 1.07064035800587 1880 0.295093191376781 4 2 2 -6.79323325080291 LTS-001 chr1 181479794 181480447 654 * CACNA1E NA 0 NA 1.393 1 NA NA NA NA NA LTS-001 chr1 181480448 183495965 2015518 * c(ZNF648, TEDDM1, DHX9, NMNAT2, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, SMG7) 0.443362748416402 54 0.07023323676985 1.1348956784171 1934 0.248884402343826 4 2 2 -6.7451681085832 LTS-001 chr1 183495966 183496715 750 * SMG7 NA 0 NA 0.786 1 NA NA NA NA NA LTS-001 chr1 183496716 196716667 13219952 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, CFH, BRINP3, KCNT2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2, SMG7) 0.456312600770913 76 0.03150580007866 1.04542716695247 4046 0.236834227656365 4 2 2 -8.02848574816677 LTS-001 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.527 1 NA NA NA NA NA LTS-001 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.441804734303972 113 0.20664365165033 0 NA NA -5.76797074438856 LTS-001 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.023 1 NA NA NA NA NA LTS-001 chr1 196857130 200828006 3970877 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5, DDX59, KIF14) 0.433553169043228 43 0.104158490487537 1.02973230179498 2327 0.286106425961959 3 2 1 -6.92137252858806 LTS-001 chr1 200828007 209347535 8519529 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, CSRP1, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, PHLDA3, TMEM9, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, IL10, RPS10P7, NA NA NA NA NA NA NA NA NA LTS-001 KISS1, TMEM81, LAD1, NA, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, LAX1, KLHDC8A, ETNK2, AVPR1B, YOD1, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, NUAK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RASSF5, FCAMR, DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2) 0.442317938038015 284 0.0696995211025517 1.09450255256841 11493 0.2620995788108 4 2 2 -6.89804140233738 LTS-001 NA NA NA NA LTS-001 chr1 209347536 209602774 255239 * MIR205HG NA 0 NA 1.03257603597359 5 0.175708565528263 3 NA NA -5.78821108410244 LTS-001 chr1 209602775 209603685 911 * MIR205HG NA 0 NA 1.611 1 NA NA NA NA NA LTS-001 chr1 209603686 209786078 182393 * c(MIR205, CAMK1G, MIR205HG) 0.35 1 NA 1.46797936771047 69 0.29427543844898 6 6 0 -5.76557622628575 LTS-001 chr1 209786079 214507653 4721575 * c(MIR4260, MIR3122, LINC00538, TATDN3, C1orf74, SPATA45, FAM71A, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, LAMB3, ATF3, NEK2, G0S2, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, LPGAT1) 0.401767667974635 61 0.0885146957635862 1.34361245084935 3044 0.342397746677414 5 3 2 -6.75845880890075 LTS-001 chr1 214507654 214509953 2300 * SMYD2 NA 0 NA 1.625 1 NA NA NA NA NA LTS-001 chr1 214509954 218617994 4108041 * c(LINC00210, CENPF, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, SMYD2, PTPN14, TGFB2, TGFB2-AS1, USH2A) 0.394670582713212 64 0.0451525385345178 1.46351449812919 1880 0.375900419082291 6 4 2 -6.8430826555194 LTS-001 chr1 218617995 218683322 65328 * character(0) NA 0 NA 1.031 1 NA NA NA NA NA LTS-001 chr1 218683323 220355615 1672293 * c(BPNT1, LYPLAL1, EPRS, RAB3GAP2, RNU5F-1, MIR194-1, MIR215, SLC30A10, IARS2, LYPLAL1-AS1) 0.407599200868705 8 0.0532365006363116 1.31254705052275 654 0.361581496681172 5 3 2 -6.76221382757709 LTS-001 chr1 220355616 220375728 20113 * c(RAB3GAP2, SNORA36B) 0.361 1 NA 1.53095109144158 53 0.353469212287058 6 6 0 -5.7644231815019 LTS-001 chr1 220375729 220808921 433193 * c(RAB3GAP2, MARK1, AURKAPS1) 0.301 1 NA 1.68546927045102 123 0.398103970956487 7 7 0 -5.7644807787203 LTS-001 chr1 220808922 227923250 7114329 * c(NA, MIR320B2, MIR4742, LEFTY1, DUSP10, SNAP47, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, FBXO28, LIN9, CNIH4, PYCR2, H3F3A, HLX, ZNF678, ITPKB, MIA3, STUM, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MARK1, H3F3AP4, NVL, MARC2, SUSD4, ENAH, PSEN2, COQ8A, ACBD3, MARC1, AIDA, JMJD4, SRP9, LEFTY2, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, MIXL1, CDC42BPA, DISP1, DEGS1, TAF1A, TMEM63A) 0.314487392296771 117 0.067887986138573 1.6566807058406 5200 0.411080563678206 7 5 2 -6.81584824055725 LTS-001 chr1 227923251 227935339 12089 * SNAP47 NA 0 NA 1.738 1 NA NA NA NA NA LTS-001 chr1 227935340 231488524 3553185 * c(MIR1182, MIR3620, MIR4666A, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, C1orf131, MRPL55, HIST3H2BB, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, GUK1, PRSS38, ARF1, FAM89A, TRIM67, TRIM17, NUP133, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, ARV1, WNT9A, C1orf35, TTC13, PGBD5, TRIM11, HIST3H3, SPRTN, OBSCN, GNPAT, C1orf198, WNT3A, HIST3H2A, URB2) 0.31644865546044 70 0.0537530373738556 1.76491176340542 3975 0.40062352364781 8 6 2 -6.81298279372847 LTS-001 chr1 231488525 231489353 829 * SPRTN 0.316 1 NA 1.83357821627481 17 0.184230194880976 8 8 0 -5.76441923616553 LTS-001 chr1 231489354 231881353 392000 * c(LINC00582, TSNAX-DISC1, DISC1, EGLN1, SNRPD2P2, TSNAX, SPRTN) 0.109982677079127 9 0.15888080787531 1.64952403827111 349 0.5905567360457 7 7 0 -6.73692654362257 LTS-001 chr1 231881354 231906589 25236 * c(TSNAX-DISC1, DISC1) 0.321 1 NA 1.74815115667202 15 0.367329124511365 7 7 0 -5.7645107981463 LTS-001 chr1 231906590 233397973 1491384 * c(TSNAX-DISC1, DISC2, DISC1, MAP10, SIPA1L2, PCNX2, NTPCR) 0.343624754453599 15 0.0339053303858173 1.75893373456001 822 0.42193476914139 7 5 2 -6.75866748085782 LTS-001 chr1 233397974 233398725 752 * PCNX2 NA 0 NA 1.294 1 NA NA NA NA NA LTS-001 chr1 233398726 233464466 65741 * c(PCNX2, MLK4) NA 0 NA 1.05220924579741 42 0.492234996827945 4 NA NA -5.76561248505244 LTS-001 chr1 233464467 236899015 3434549 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.308248125730797 55 0.0612192780094637 1.6325440367508 2471 0.400748129871726 7 5 2 -6.8865075463846 LTS-001 chr1 236899016 246493918 9594903 * c(AKT3, LOC100130331, MIR3123, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, ADSS, PLD5, C1orf100, FH, OPN3, C1orf101, NA, HNRNPU, LOC339529, LINC01139, MAP1LC3C, MTR, DESI2, KIF26B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, EFCAB2, KMO, ACTN2, EXO1, CEP170) 0.316836936616156 81 0.067791929305872 1.78491996267171 3924 0.426125722180705 8 6 2 -6.83553033270473 LTS-001 chr1 246493919 246498637 4719 * SMYD3 NA 0 NA 1.429 1 NA NA NA NA NA LTS-001 chr1 246498638 246943955 445318 * c(LINC01341, CNST, LOC255654, SCCPDH, TFB2M, SMYD3) 0.177591277162142 2 0.0311126983722081 1.42223806680027 313 0.415050056101918 4 4 0 -6.80872912198317 LTS-001 chr1 246943956 247002368 58413 * LINC01341 NA 0 NA 1.897 1 NA NA NA NA NA LTS-001 chr1 247002369 249149675 2147307 * c(MIR3124, MIR3916, ZNF670-ZNF695, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, OR2W5, OR13G1, ZNF692, ZNF695, LYPD8, ZNF124, NA NA NA NA NA NA NA NA NA LTS-001 ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496, ZNF670) 0.327319816390445 62 0.0636761455110081 1.80606511500935 2120 0.66959807713441 7 5 2 -6.75974626523288 LTS-001 NA NA NA NA LTS-001 chr1 249149676 249150116 441 * ZNF692 0.3913154354505 2 0.0572756492761104 1.39108515898196 10 0.27380926045536 16 10 6 -6.73833959203064 LTS-001 chr1 249150117 249214134 64018 * c(PGBD2, ZNF692) NA 0 NA 1.4157398212187 115 0.296727277209944 5 NA NA -5.76611419985673 LTS-001 chr2 38824 218476 179653 * c(SH3YL1, FAM110C) 0.443 1 NA 0.912475758928368 89 0.216538202533137 3 3 0 -5.77116658290648 LTS-001 chr2 218477 668533 450057 * c(TMEM18, SH3YL1, FAM150B, ACP1) 0.434036783875406 8 0.0515819389764618 0.983673861291865 226 0.212490637609707 4 2 2 -6.87039844858668 LTS-001 chr2 668534 3212763 2544230 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.450054862694867 19 0.0511391291118238 1.14922999509226 750 0.236335983085007 4 2 2 -6.78988480828708 LTS-001 chr2 3212764 3217867 5104 * TSSC1 NA 0 NA 1.041 1 NA NA NA NA NA LTS-001 chr2 3217868 26612053 23394186 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-001 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, SELENOI, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.440426853670829 210 0.0775208474889019 1.03796965163698 10392 0.258174359099835 3 2 1 -7.88190215067811 LTS-001 NA NA NA NA LTS-001 chr2 26612054 27549838 937785 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, DNAJC5G, GTF3C2, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.466943722832204 16 0.0321351313466534 1.1102963900356 2258 0.222833494359588 4 2 2 -7.30898196893334 LTS-001 chr2 27549839 30865064 3315226 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.454973393656055 93 0.0374678481460276 1.02288246127486 3521 0.211017110589564 4 2 2 -7.44362098434823 LTS-001 chr2 30865065 30866486 1422 * LCLAT1 0.208 1 NA 0.436762464956992 39 0.608774817709687 0 0 0 -5.76441707707966 LTS-001 chr2 30866487 30866585 99 * LCLAT1 NA 0 NA 1.053 1 NA NA NA NA NA LTS-001 chr2 30866586 31628853 762268 * c(LCLAT1, EHD3, CAPN14, XDH, GALNT14, CAPN13) 0.452350906600696 20 0.0299685800376608 1.10891489988808 671 0.274537928543013 4 2 2 -6.95091953981089 LTS-001 chr2 31628854 31637401 8548 * XDH NA 0 NA 0.743 1 NA NA NA NA NA LTS-001 chr2 31637402 70887390 39249989 * c(SNORA36C, SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LOC100133985, LINC01119, DBIL5P2, ARHGEF33, LOC100271832, LOC100288911, MIR3126, MIR3682, CEBPZOS, MIR4765, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, RMDN2-AS1, CEBPZ, C1D, CCT4, CDC42EP3, B3GNT2, SIX2, PROKR1, GPR75, SNRNP27, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, ADD2, PPP1R21, C2orf73, CLHC1, PLEKHH2, GALM, TMEM178A, AHSA2, NA NA NA NA NA NA NA NA NA LTS-001 COMMD1, PUS10, LINC00309, MYADML, RMDN2, ASPRV1, CYP1B1, OXER1, KCNG3, GKN2, APLF, TMEM17, SPRED2, EPAS1, EFEMP1, AAK1, CEP68, PSME4, EHBP1, RHOQ, HAAO, PRKD3, FSHR, GPATCH11, RASGRP3, QPCT, CNRIP1, FAM98A, GFPT1, NFU1, ERLEC1, BMP10, EML4, LINC00486, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, LGALSL, MSH6, ANXA4, FOXN2, LOC339803, C2orf74, LOC339807, CDKL4, PRORSD1P, LOC375196, LOC388942, TMEM247, LINC01118, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TSPYL6, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, LTBP1, MIR216A, MIR217, EPCAM, MXD1, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, PCBP1, WDPCP, MEMO1, ASB3, CRIM1, PCYOX1, VPS54, DYNC2LI1, PEX13, VIT, PIGF, BCL11A, PLEK, ETAA1, HEATR5B, AFTPH, PPM1B, C2orf42, FANCL, SRBD1, PPP3R1, FBXO48, NDUFAF7, TTC27, SLC30A6, CCDC88A, PRKCE, EIF2AK2, GKN1, KCNK12, PNO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, BIRC6, MTA3, NLRC4, RAB1A, REL, RPS27A, THADA, ATL2, ABCG5, ABCG8, SRSF7, GMCL1, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SLC8A1, SNRPG, SOS1, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, MIR558, MIR559, TGFA, TIA1, LOC728730, C1GALT1C1L, MORN2, MEIS1-AS3, UGP2, VRK2, XDH, XPO1, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, FAM161A, ANTXR1, YIPF4, KIAA1841, DPY30, FAM136A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MAP4K3, PNPT1, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, CRIPT, PREPL, FEZ2, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.439992283437449 268 0.0756228927093332 1.01515133333064 18631 0.450449422332878 3 2 1 -7.19933612815698 LTS-001 NA NA NA NA LTS-001 chr2 70887391 72356917 1469527 * c(MPHOSPH10, TEX261, ADD2, CLEC4F, VAX2, ZNF638, FIGLA, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, OR7E91P, ANKRD53, DYSF, MCEE) 0.42213476806892 49 0.0895173471578379 1.07558492394123 1480 0.22835176302308 4 2 2 -6.81243529009293 LTS-001 chr2 72356918 72411383 54466 * c(EXOC6B, CYP26B1) NA 0 NA 1.47621597922511 173 0.29827781568534 6 NA NA -5.7646357524496 LTS-001 chr2 72411384 72561952 150569 * EXOC6B NA 0 NA 0.866 1 NA NA NA NA NA LTS-001 chr2 72561953 77749300 5187348 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SMYD5, SEMA4F, CCT7, STAMBP, MTHFD2, MRPL53, M1AP, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, EMX1, EXOC6B, WBP1, RAB11FIP5, HTRA2, HK2, TLX2, NOTO, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, SPR, TACR1, GCFC2, ACTG2, ALMS1, MOGS, LRRTM4, INO80B, WDR54, EVA1A, PRADC1, DUSP11, LOXL3, PCGF1, CCDC142, NA NA NA NA NA NA NA NA NA LTS-001 LBX2, NAT8, SFXN5, MRPL19) 0.439561250998268 75 0.0430512705026448 1.0463261119381 4482 0.255341264691233 4 2 2 -7.11774858168376 LTS-001 NA NA NA NA LTS-001 chr2 77749301 80835481 3086181 * c(SNAR-H, MIR4264, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, LRRTM4) 0.485 1 NA 1.25599012416445 302 0.243760655629788 5 5 0 -5.86474489187701 LTS-001 chr2 80835482 80846182 10701 * CTNNA2 NA 0 NA 0.885 1 NA NA NA NA NA LTS-001 chr2 80846183 85531007 4684825 * c(TRABD2A, CTNNA2, DHFRP3, DNAH6, FUNDC2P2, KCMF1, TCF7L1, SUCLG1, TMSB10) 0.46427213309816 15 0.0276374487141735 0.978753712825441 686 0.21101824496582 4 2 2 -8.63908429937738 LTS-001 chr2 85531008 85545490 14483 * c(TGOLN2, TCF7L1) 0.262280960101827 3 0.163500254841799 1.39422949887461 75 0.259567382284342 6 5 1 -6.73435392852003 LTS-001 chr2 85545491 85545542 52 * TGOLN2 NA 0 NA 1.098 1 NA NA NA NA NA LTS-001 chr2 85545543 87092865 1547323 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TMEM150A, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, ELMOD3, ATOH8, VAMP8, ST3GAL5, LOC90784, CD8A, CD8B) 0.445843354877503 78 0.0573461616072275 1.08776051175907 2458 0.252833945494616 4 2 2 -6.79751803246374 LTS-001 chr2 87092866 87092912 47 * c(ANAPC1P1, RMND5A) NA 0 NA 0.856 1 NA NA NA NA NA LTS-001 chr2 87092913 87424251 331339 * c(ANAPC1P1, LOC285074, RMND5A) 0.317323357892931 2 0.190211724139181 0.782476493143388 109 0.287253224320934 2 2 0 -6.77807669186606 LTS-001 chr2 87424252 88926964 1502713 * c(MIR4780, CYTOR, SMYD1, TEX37, FABP1, FOXI3, KRCC1, THNSL2, RMND5A, EIF2AK3) 0.400441826409563 26 0.0769893599042201 1.15548925076012 550 0.365643067363124 4 2 2 -6.84700086712484 LTS-001 chr2 88926965 89952921 1025957 * c(MIR4436A, RPIA, ANKRD36BP2, EIF2AK3) 0 1 NA 1.06314258257176 252 0.713549611936067 4 4 0 -5.77131429996305 LTS-001 chr2 89952922 89953035 114 * character(0) NA 0 NA 1.11184384390564 3 0.271354626519124 4 NA NA -5.76441100934645 LTS-001 chr2 89953036 90260036 307001 * character(0) 0.405 1 NA 0.666423291382857 122 0.849690677038883 1 1 0 -5.76752210754931 LTS-001 chr2 91766520 91937761 171242 * LOC654342 0.344659983082894 18 0.0745486856755215 1.08493231973212 77 0.300440740270386 4 3 1 -6.7391284847303 LTS-001 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.11692708449388 18 0.251034565231915 4 NA NA -5.7645263940857 LTS-001 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.469 1 NA 0.69 1 NA NA NA NA NA LTS-001 chr2 95537246 132289460 36752215 * c(RAB6C-AS1, CYP4F30P, RNU4ATAC, BCL2L11, FAR2P2, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4783, MIR4782, MIR4784, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, MAP3K2, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, TUBA3E, MGAT4A, TUBA3D, RPL23AP7, CNGA3, NMS, LYG1, MITD1, CNTNAP5, FBLN7, TRIM43, FAM168B, C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, NA NA NA NA NA NA NA NA NA LTS-001 CBWD2, TEKT4, LINC01102, C2orf15, PROM2, GPAT2, ITPRIPL1, LOC150776, WTH3DI, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, DBI, LONRF2, CCDC138, C1QL2, DUSP2, FOXD4L1, CFAP221, VWA3B, CREG2, ANKRD23, EN1, AMER3, LINC00116, ERCC3, FHL2, SNRNP200, CLASP1, NCAPH, TMEM131, PSD4, NIFK-AS1, LYG2, UNC50, PTPN18, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 STARD7-AS1, MED15P9, PLGLA, RGPD4, TFCP2L1, GYPC, KCNIP3, CYP27C1, KIAA1211L, SH3RF3, GPR148, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, LOC389033, LINC01120, AFF3, LIMS1, FLJ42351, NOC2LP2, MAL, ASTL, LINC01191, FAR2P1, LOC440910, LOC442028, SULT1C3, POTEE, MYO7B, NPAS2, NPHP1, COA5, ARHGEF4, FAHD2A, INSIG2, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 POLR2D, CCDC93, POU3F3, SEMA4C, PLEKHB2, STEAP3, ACOXL, WDR33, CNOT11, SMPD4, TMEM127, IWS1, LIMS2, KANSL3, CFC1, PROC, IL36G, UGGT1, STARD7, DPP10, EPB41L5, ANKRD36B, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, MRPS5, SOWAHC, TRIM43B, POTEI, CFC1B, RGPD3, POTEJ, MZT2A, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, POTEF, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ZAP70, ZNF2, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, SAP130, MZT2B, UXS1, SLC35F5, TSGA10, TMEM177, LMAN2L, AMMECR1L, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, ZNF514, TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, FER1L5, CCDC74A, CCDC74B, IL1RL1, IMP4, NEURL3, CIAO1, TGFBRAP1, HS6ST1, MAP4K4, CHST10, GCC2, EIF5B) 0.433398696340744 450 0.0670635078535441 1.0158187932904 19683 0.292266106548581 3 2 1 -7.52906693396298 LTS-001 NA NA NA NA LTS-001 chr2 132289461 132289465 5 * CCDC74A NA 0 NA 1.74 1 NA NA NA NA NA LTS-001 chr2 132289466 135956852 3667387 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, RAB3GAP1, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, MAP3K19, TMEM163, CCNT2, CCDC74A) 0.435679430945731 52 0.0542901643550778 1.08453391776954 1293 0.287538438367086 4 2 2 -6.814869484534 LTS-001 chr2 135956853 135957153 301 * character(0) NA 0 NA 0.789 1 NA NA NA NA NA LTS-001 chr2 135957154 136743226 786073 * c(LOC100507600, DARS, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, ZRANB3) 0.381366008411928 6 0.179284132036274 0.94806927132627 747 0.204053263356814 3 2 1 -6.74236903664968 LTS-001 chr2 136743227 136871917 128691 * character(0) NA 0 NA 1.28 1 NA NA NA NA NA LTS-001 chr2 136871918 143643113 6771196 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, CXCR4, THSD7B, KYNU) 0.444605913905905 24 0.0401258888564694 1.11319055031433 1075 0.38598395652976 4 2 2 -6.79648990853267 LTS-001 chr2 143643114 143676268 33155 * KYNU NA 0 NA 0.903 1 NA NA NA NA NA LTS-001 chr2 143676269 145146462 1470194 * c(ARHGAP15, GTDC1, KYNU, ZEB2) 0.382149559862646 4 0.213400054670408 0.882915057291758 297 0.207141358456713 3 2 1 -6.88951266859395 LTS-001 chr2 145146463 145146566 104 * ZEB2 NA 0 NA 1.485 1 NA NA NA NA NA LTS-001 chr2 145146567 170349557 25202991 * c(TANK, LOC100144595, ZEB2-AS1, SNORA70F, LOC100506124, TTC21B-AS1, LY75-CD302, MIR4774, MIR4785, MIR4773-1, MIR4773-2, CERS6-AS1, DHRS9, PSMD14, STAM2, KLHL41, TBR1, GALNT5, FMNL2, GALNT13, NOSTRIN, XIRP2, BBS5, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, SLC38A11, WDSUB1, UPP2, DPP4, FAP, COBLL1, PLA2R1, CERS6, GCA, GALNT3, EPC2, ARL5A, GCG, MMADHC, STK39, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, NA NA NA NA NA NA NA NA NA LTS-001 KIF5C, RND3, TEX41, LRP2, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, SLC4A10, SPC25, ERMN, G6PC2, RBMS1, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, TTC21B, CSRNP3, PKP4, TANC1, ABCB11, B3GALT1, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.430000440504002 178 0.0826720791169789 1.01505391554277 11024 0.321232042190258 3 2 1 -7.18732898870136 LTS-001 NA NA NA NA LTS-001 chr2 170349558 170350181 624 * c(KLHL41, BBS5) NA 0 NA 1.321 1 NA NA NA NA NA LTS-001 chr2 170350182 179367086 9016905 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NA NA NA NA NA NA NA NA NA LTS-001 NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.439892595335883 141 0.0440758717683246 1.14051137315905 6486 0.293703280739807 4 2 2 -6.74462580845218 LTS-001 NA NA NA NA LTS-001 chr2 179367087 179367140 54 * c(MIR548N, PLEKHA3) NA 0 NA 1.311 1 NA NA NA NA NA LTS-001 chr2 179367141 179741715 374575 * c(MIR548N, TTN-AS1, CCDC141, PLEKHA3, TTN) 0.465473798514012 56 0.0677690405505557 1.22281655450094 3261 0.22782333946198 4 2 2 -6.8755685851147 LTS-001 chr2 179741716 183951865 4210150 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, SESTD1) 0.435553451700551 33 0.0463173547224455 1.13051630150282 1645 0.261046233099107 4 2 2 -6.74092984088392 LTS-001 chr2 183951866 189839330 5887465 * c(CALCRL, DIRC1, COL3A1, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.464132653705543 43 0.0322234378151838 1.25653333764189 1789 0.794314145561993 4 2 2 -7.25547205400253 LTS-001 chr2 189839331 189842816 3486 * COL3A1 NA 0 NA 0.89 1 NA NA NA NA NA LTS-001 chr2 189842817 196601763 6758947 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, COL3A1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.432624091898243 36 0.0895609218920771 1.16066958498475 3000 0.435286905419746 4 2 2 -6.73639031931319 LTS-001 chr2 196601764 198670135 2068372 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.445591025862549 47 0.0472432248494116 1.06974370440557 2181 0.265739503867451 4 2 2 -6.8508859717076 LTS-001 chr2 198670136 198674885 4750 * PLCL1 NA 0 NA 1.327 1 NA NA NA NA NA LTS-001 chr2 198674886 200684543 2009658 * c(SATB2-AS1, SATB2, FTCDNL1, PLCL1) 0.45077911938275 3 0.0692820323027551 1.24193590630814 263 0.236354944823523 4 2 2 -6.90145388082713 LTS-001 chr2 200684544 203817356 3132813 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, C2orf69, SPATS2L, FAM126B, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.43477617150731 77 0.0837337409361075 0.963412290600414 3683 0.226514353402426 3 2 1 -6.83498959123199 LTS-001 chr2 203817357 208811284 4993928 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, MIR4775, ABI2, PARD3B, CPO, MDH1B, CREB1, CTLA4, METTL21A, CCNYL1, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, PLEKHM3, DYTN, NDUFS1, INO80D, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, FZD5, CARF, KLF7, ADAM23, NRP2, CD28) 0.44146646858457 38 0.0615117111748998 1.02607738763619 3616 0.263446692815396 3 2 1 -7.1615680882281 LTS-001 chr2 208811285 209007607 196323 * c(LOC100507443, CRYGB, CRYGC, CRYGD, PLEKHM3) 0 1 NA 1.10782893799167 89 0.512076665389036 4 4 0 -5.76494286700019 LTS-001 chr2 209007608 210518149 1510542 * c(LOC100507443, IDH1-AS1, CRYGA, CRYGB, CRYGD, PIKFYVE, IDH1, C2orf80, MAP2, PTH2R) 0.427229482351832 3 0.0524817428572388 1.03189382880152 548 0.27079148057335 4 2 2 -6.87814071578337 LTS-001 chr2 210518150 210543280 25131 * MAP2 NA 0 NA 0.649 1 NA NA NA NA NA LTS-001 chr2 210543281 217735792 7192512 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, LANCL1, CPS1, PKI55, KANSL1L, ERBB4, IKZF2, FN1, ABCA12, UNC80, CPS1-IT1, ACADL, IGFBP2, IGFBP5, VWC2L, MAP2, MYL1, ATIC, SMARCAL1, MREG, PECR, MARCH4, BARD1, RPE, RPL37A, LINC00607, TNP1, XRCC5, SPAG16, TMEM169) 0.291813491117783 83 0.0835720561486301 0.694075245205872 3691 0.22610539482582 2 2 0 -7.76803791168711 LTS-001 chr2 217735793 217736155 363 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-001 chr2 217736156 218712936 976781 * c(TNS1, DIRC3) 0.277730352331401 17 0.0353751948653955 0.867364825764225 253 0.197537327205837 2 2 0 -6.97404059355443 LTS-001 chr2 218712937 218713282 346 * TNS1 0.24 1 NA 0.768559869667299 7 0.216241157264842 2 2 0 -5.76441110633223 LTS-001 chr2 218713283 230272084 11558802 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, MIR4439, MIR5702, MIR5703, ARPC2, SPEG, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, CNPPD1, STK36, RUFY4, GMPPA, AGFG1, DNAJB2, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, RESP18, MIR153-1, MIR26B, NA NA NA NA NA NA NA NA NA LTS-001 MIR375, PAX3, SERPINE2, PRKAG3, FEV, PID1, ANKZF1, ASIC4, DOCK10, C2orf83, MFF, WDFY1, NYAP2, USP37, PTPRN, CTDSP1, BCS1L, CCL20, TMBIM1, RNF25, LOC646736, SLC4A3, MRPL44, LOC654841, SLC11A1, TNS1, TUBA4A, VIL1, WNT6, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, CDK5R2, CNOT9, DNER, TTLL4) 0.239334089013614 174 0.0534243998615309 0.871419531581896 8821 0.392705232863639 3 3 0 -7.28003441322646 LTS-001 NA NA NA NA LTS-001 chr2 230272085 230282724 10640 * DNER NA 0 NA 0.677 1 NA NA NA NA NA LTS-001 chr2 230282725 231663685 1380961 * c(SP140, FBXO36, SLC16A14, LOC151475, SP110, CAB39, SP100, DNER, TRIP12, SP140L) 0.236076795853281 29 0.0620705144853247 0.796326433748817 1070 0.195145249256428 2 2 0 -6.87003623759345 LTS-001 chr2 231663686 231674907 11222 * CAB39 NA 0 NA 0.921 1 NA NA NA NA NA LTS-001 chr2 231674908 242836535 11161628 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, NA NA NA NA NA NA NA NA NA LTS-001 SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, ATG16L1, PPP1R7, USP40, HJURP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SPP2, SCARNA6, SCARNA5, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, ECEL1, EIF4E2, HDAC4, FARP2) 0.243971120212623 332 0.0632283372061201 0.85382201487216 11181 0.294084161163216 2 2 0 -7.37286326774468 LTS-001 NA NA NA NA LTS-001 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.800960180401319 25 0.124245093799849 2 NA NA -5.76987341500774 LTS-001 chr3 239351 418089 178739 * CHL1 0.397 1 NA 1.46613276663817 67 0.195100272262744 6 6 0 -5.76722902883567 LTS-001 chr3 418090 4821401 4403312 * c(EGOT, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.368632074588479 32 0.0748680290524169 1.5236897515459 1189 0.492015390489101 6 4 2 -6.74101087003485 LTS-001 chr3 4821402 4824242 2841 * ITPR1 NA 0 NA 2.039 1 NA NA NA NA NA LTS-001 chr3 4824243 8809663 3985421 * c(LMCD1-AS1, BHLHE40-AS1, MIR4790, GRM7, LINC00312, LMCD1, ITPR1, OXTR, SSUH2, ARL8B, BHLHE40, CAV3, EDEM1) 0.334660611976972 22 0.0426942467002136 1.72354825899358 938 0.470369059243972 7 5 2 -6.73849759597952 LTS-001 chr3 8809664 9094948 285285 * c(OXTR, RAD18, SRGAP3) 0.352104710466417 6 0.16773719523906 1.46604185038915 382 0.331939352513316 6 4 2 -6.74776660026152 LTS-001 chr3 9094949 9490363 395415 * c(SRGAP3-AS3, THUMPD3, THUMPD3-AS1, SETD5, SRGAP3) NA 0 NA 1.42862424605922 254 0.247252178654439 6 NA NA -5.7772380406155 LTS-001 chr3 9490364 9757086 266723 * c(CPNE9, LHFPL4, SETD5, MTMR14) 0.479 1 NA 1.14145684451591 337 0.261625151712289 4 4 0 -5.76445823286884 LTS-001 chr3 9757087 15116426 5359340 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, FGD5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, HRH1, TPRXL, IRAK2, LOC401052, ATP2B2, OGG1, CCDC174, GHRL, PPARG, TMEM40, EMC3, BRK1, RAF1, RPL32, CIDEC, SEC13, RBSN, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, NA NA NA NA NA NA NA NA NA LTS-001 TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, VGLL4, TATDN2, IQSEC1) 0.456428762460021 118 0.0570566209066049 1.13931435932776 5682 0.260446196676362 4 2 2 -6.82423793950812 LTS-001 NA NA NA NA LTS-001 chr3 15116427 25639849 10523423 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, DPH3, LOC339862, COL6A4P1, VENTXP7, RAB5A, RARB, RPL15, SATB1, RBSN, THRB-AS1, BTD, MIR563, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, COLQ, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5, NR1D2) 0.455622279654723 56 0.032858294728539 1.08283518937173 3240 0.276241830480682 4 2 2 -7.23624116217858 LTS-001 chr3 25639850 26752211 1112362 * c(MIR4442, LRRC3B, LINC00692, OXSM, NGLY1, TOP2B) NA 0 NA 1.06316169964646 333 0.238828409398132 4 NA NA -5.8305407160734 LTS-001 chr3 26752212 27151599 399388 * LRRC3B NA 0 NA 0.733 1 NA NA NA NA NA LTS-001 chr3 27151600 27152266 667 * character(0) 0.139 1 NA 0.792607532459972 13 0.0815393565504823 2 2 0 -5.76442550976429 LTS-001 chr3 27152267 29322525 2170259 * c(ZCWPW2, CMC1, NEK10, AZI2, LINC00693, EOMES, SLC4A7) 0.256909467923871 17 0.0569518630589233 0.707336251516458 795 0.186981501839946 2 2 0 -7.08198792137566 LTS-001 chr3 29322526 32806510 3483985 * c(OSBPL10-AS1, CMTM7, OSBPL10, CMTM8, STT3B, GPD1L, CNOT10, RBMS3, GADL1, ZNF860, DYNC1LI1, CMTM6, TGFBR2) 0.273665681160069 22 0.0513481664632166 0.777551286363308 1204 0.245069133396904 2 2 0 -6.75033618813098 LTS-001 chr3 32806511 32995928 189418 * c(CCR4, TRIM71, CNOT10) 0.169 1 NA 0.775619084330779 115 0.19954977356075 2 2 0 -5.76450196653194 LTS-001 chr3 32995929 32997828 1900 * CCR4 NA 0 NA 0.685374227841661 23 0.102447074931671 2 NA NA -5.76622650945889 LTS-001 chr3 32997829 33038073 40245 * character(0) NA 0 NA 0.993 1 NA NA NA NA NA LTS-001 chr3 33038074 41973460 8935387 * c(ACVR2B-AS1, PDCD6IP, CTDSPL, EIF1B, CRTAP, ARPP21, SCN11A, CCR8, CTNNB1, CX3CR1, XIRP1, TTC21A, CLASP2, ZNF620, FBXL2, MYRIP, SUSD5, GLB1, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, VILL, PLCD1, SLC25A38, ULK4, SNORA6, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, CSRNP1, GORASP1, STAC, UBP1, DCLK3, RPL14, LRRFIP2, ACVR2B, SLC22A14, NA NA NA NA NA NA NA NA NA LTS-001 SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.178363922316545 110 0.0474621353843887 1.16665045557005 6178 0.279558857508342 4 4 0 -6.75449356554973 LTS-001 NA NA NA NA LTS-001 chr3 41973461 41996337 22877 * ULK4 NA 0 NA 1.07394836260816 21 0.0681586384840543 4 NA NA -5.77705879946635 LTS-001 chr3 41996338 42132545 136208 * ULK4 NA 0 NA 0.946 1 NA NA NA NA NA LTS-001 chr3 42132546 42304784 172239 * c(TRAK1, CCK) 0.364 1 NA 0.882663418733462 269 0.208146556041888 3 3 0 -5.78260097251739 LTS-001 chr3 42304785 42772149 467365 * c(LYZL4, KLHL40, CCDC13, NKTR, SS18L2, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.230541670730826 6 0.0292141518217912 0.851971451467583 734 0.217822023468489 3 3 0 -6.99414143162596 LTS-001 chr3 42772150 46623760 3851611 * c(KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, ACKR2, TMEM42, CCDC13, CYP8B1, SACM1L, EXOSC7, LARS2, TMEM158, HIGD1A, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, NA NA NA NA NA NA NA NA NA LTS-001 LIMD1, CCRL2, ZNF502) 0.253939745734382 93 0.0601878429384843 0.798847193809529 4520 0.191788463404051 2 2 0 -6.78878751566571 LTS-001 NA NA NA NA LTS-001 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.943 1 NA NA NA NA NA LTS-001 chr3 46623907 52457657 5833751 * c(LINC00696, NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, PARP3, MIR4271, IQCF4, ABHD14A-ACY1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, CCDC12, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, NA NA NA NA NA NA NA NA NA LTS-001 NBEAL2, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, ALS2CL, TMIE, PTPN23, DNAH1, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, IMPDH2, C3orf62, PRSS45, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, MST1, MST1R, MYL3, MIR425, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 IP6K2, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PRKAR2A, PCBP4, PTH1R, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, SLC26A6, SMARCC1, TCTA, TDGF1, UBA7, USP4, UQCRC1, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, CACNA2D2, ACY1, DCAF1, IP6K1, CDC25A) 0.256021566947848 96 0.0731857398810029 0.834888526986453 12822 0.182009744468993 2 2 0 -7.19428929846535 LTS-001 NA NA NA NA LTS-001 chr3 52457658 52467016 9359 * character(0) NA 0 NA 1.823 1 NA NA NA NA NA LTS-001 chr3 52467017 52489688 22672 * c(NISCH, SEMA3G, TNNC1) 0.169617015000049 2 0.0197989898732233 1.27960812886807 164 0.28450263921585 10 9 1 -6.81062691048772 LTS-001 chr3 52489689 54596834 2107146 * c(SNORD19B, TMEM110-MUSTN1, NISCH, STAB1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, SMIM4, SFMBT1, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SELENOK, NT5DC2, NEK4, SNORD19, SNORD69, TKT, CACNA1D, RFT1, ACTR8) 0.267084887607025 64 0.0520653564213836 0.816248995731527 2808 0.185383511716088 2 2 0 -6.8088073222943 LTS-001 chr3 54596835 54596933 99 * CACNA2D3 NA 0 NA 0.892 1 NA NA NA NA NA LTS-001 chr3 54596934 55508674 911741 * c(CACNA2D3-AS1, CACNA2D3, LRTM1, WNT5A, ESRG) 0.24385809224195 6 0.0429961238563044 0.933684406957551 325 0.249131407828422 3 3 0 -7.00707164481771 LTS-001 chr3 55508675 55513322 4648 * WNT5A NA 0 NA 0.763 1 NA NA NA NA NA LTS-001 chr3 55513323 58631401 3118079 * c(MIR3938, ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, ERC2-IT1, WNT5A, SLMAP, ACOX2, HESX1) 0.238279447263722 68 0.0690554675198209 0.79385647030466 3019 0.20899270982653 2 2 0 -6.83488212471136 LTS-001 chr3 58631402 58635013 3612 * FAM3D NA 0 NA 1.025 1 NA NA NA NA NA LTS-001 chr3 58635014 59737129 1102116 * c(FAM3D, C3orf67, FHIT) 0 2 0 1.14919110559448 198 0.313767235494786 0 0 0 -Inf LTS-001 chr3 59737130 59737251 122 * FHIT 0.45 1 NA 1.60684506528954 3 0.101707095786545 7 7 0 -5.76443085447935 LTS-001 chr3 59737252 68594319 8857068 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, FHIT, LRIG1, LINC00698, FAM19A1, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.461898023661744 49 0.0343849382665119 1.2129566713966 2345 0.334084135859829 4 2 2 -7.24449687422735 LTS-001 chr3 68594320 68594346 27 * FAM19A1 NA 0 NA 1.07 1 NA NA NA NA NA LTS-001 chr3 68594347 73116480 4522134 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.443399778386931 20 0.0412928883898783 1.10864281073018 1751 0.264980786737395 4 2 2 -6.80587794883058 LTS-001 chr3 73116481 73618579 502099 * PDZRN3 0.491870916408236 4 0.00788986691902975 1.26251465848477 158 0.336217860336071 4 2 2 -14.1272725460743 LTS-001 chr3 73618580 75679988 2061409 * c(MIR1324, PDZRN3, CNTN3, FAM86DP) 0.254 1 NA 1.20252986517218 193 0.270495450320729 4 4 0 -5.80244719793042 LTS-001 chr3 75679989 75790929 110941 * c(ZNF717, MIR1324) 0.31910869192334 199 0.0986773174752561 1.35042525857069 353 0.497409053672378 4 3 1 -6.76632309578997 LTS-001 chr3 75790930 75986622 195693 * ZNF717 0.392 1 NA 0.973945171733576 7 0.136140683538337 3 3 0 -5.76516964067247 LTS-001 chr3 75986623 79557072 3570450 * c(ROBO1, ROBO2) 0.45124611437708 15 0.0347346403190711 1.25371752645584 446 0.291313335136061 4 2 2 -7.06795569500876 LTS-001 chr3 79557073 79582198 25126 * ROBO1 NA 0 NA 1.05 1 NA NA NA NA NA LTS-001 chr3 79582199 88189945 8607747 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.427012030775569 10 0.146876516540634 1.1199928784021 848 0.25978288288825 4 2 2 -6.7765234022936 LTS-001 chr3 88189946 90283666 2093721 * c(EPHA3, C3orf38, ZNF654, CGGBP1) NA 0 NA 1.14003635627766 331 0.258697971548645 4 NA NA -5.76503736585162 LTS-001 chr3 93591838 93593119 1282 * PROS1 0.479 1 NA 1.0409774179719 25 0.187638064723908 3 3 0 -5.76454128513855 LTS-001 chr3 93593120 119635008 26041889 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, DRD3, ARL13B, DHFR2, GABRR3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NA NA NA NA NA NA NA NA NA LTS-001 NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, TUSC7, LINC00636, EPHA6, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, GSK3B, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, STX19, CD200, TRAT1, IMPG2, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, PROS1, CLDND1, NIT2, POGLUT1, BBX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, C3orf52, QTRT2, NAA50, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD47, GUCA1C, DZIP3, TOMM70) 0.429928626735296 213 0.0825385784223535 1.08503742552327 11094 0.320337040956802 4 2 2 -7.16647328648653 LTS-001 NA NA NA NA LTS-001 chr3 119635009 119642178 7170 * GSK3B NA 0 NA 1.206 1 NA NA NA NA NA LTS-001 chr3 119642179 132075743 12433565 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, ISY1-RAB43, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, POLQ, ALDH1L1, PDIA5, ADCY5, FSTL1, MRPL3, MGLL, TXNRD3, OSBPL11, LRRC58, CPNE4, CCDC58, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, CSTA, DTX3L, ROPN1B, C3orf22, NUDT16P1, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, ALG1L, HACD2, COPG1, TMCC1, PLXND1, LINC01565, NUP210P1, COL6A5, GATA2, NA NA NA NA NA NA NA NA NA LTS-001 FAM162A, SEC22A, ATP2C1, GOLGB1, GP9, DNAJB8-AS1, RABL3, ILDR1, ACAD9, ASTE1, KLF15, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, PIK3R4, RAB43, LOC339874, H1FX-AS1, CFAP100, ITGB5, KPNA1, MIR198, MCM2, MYLK, NDUFB4, ARGFX, PODXL2, FBXO40, PLXNA1, SEMA5B, WDR5B, PARP14, ROPN1, SLC41A3, ACPP, IFT122, EAF2, MUC13, HMCES, ISY1, HEG1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SLC15A2, SNORA7B, SNORA58, TRH, FAM86HP, UMPS, CNBP, ZNF148, RAB7A, ZXDC, HSPBAP1, EFCC1, NEK11, ABTB1, PARP9, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12, CD86, STXBP5L, IQCB1) 0.451990298160596 287 0.0563018801466527 1.13661763751753 11613 0.296662530513828 4 2 2 -6.79850112466406 LTS-001 NA NA NA NA LTS-001 chr3 132075744 132075759 16 * ACPP 0.229 1 NA 1.55886375254195 2 0.880347942577252 6 6 0 -5.76441014488843 LTS-001 chr3 132075760 133167331 1091572 * c(NPHP3-ACAD11, DNAJC13, NPHP3, NPHP3-AS1, ACKR4, ACPP, TMEM108, UBA5, ACAD11, BFSP2) 0.261250173993247 9 0.2108121860277 1.13759384104944 936 0.370714425461141 4 3 1 -6.81536161867577 LTS-001 chr3 133167332 133167363 32 * BFSP2 0.494 1 NA 0.905 1 NA NA NA NA NA LTS-001 chr3 133167364 139279331 6111968 * c(MIR4788, STAG1, TOPBP1, PISRT1, DZIP1L, EPHB1, MRAS, ANAPC13, ARMC8, KY, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, RAB6B, PIK3CB, IL20RB, MSL2, FAIM, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, BPESC1, RYK, SLCO2A1, FOXL2, TF, PRR23A, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, BFSP2, COPB2) 0.447014230047117 77 0.0909528770150817 1.15520953555569 3833 0.262060430788349 4 2 2 -6.74776486714034 LTS-001 chr3 139279332 140685827 1406496 * c(TRIM42, NMNAT3, SLC25A36, CLSTN2) 0.462328406049216 7 0.0297457479954619 1.28969337587694 343 0.417289064968985 4 2 2 -7.29101932177697 LTS-001 chr3 140685828 158547026 17861199 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, LOC100507389, ARHGEF26-AS1, LOC100507537, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, GPR171, GYG1, LINC00880, AADACL2, GPR149, NA NA NA NA NA NA NA NA NA LTS-001 PAQR9, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SLC25A36, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, HLTF, SSR3, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, EIF2A, ZIC4, HPS3, GFM1, GMPS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SLC33A1, SPSB4, PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.450010996666725 169 0.0574622378359938 1.0992716119643 8812 0.279770113988537 4 2 2 -7.012144827205 LTS-001 NA NA NA NA LTS-001 chr3 158547027 158963738 416712 * c(IQCJ-SCHIP1, MFSD1, IQCJ) 0 1 NA 1.23071446723946 31 0.720113155684055 4 4 0 -5.76682287136983 LTS-001 chr3 158963739 160791638 1827900 * c(MIR3919, IQCJ-SCHIP1, SMC4, PPM1L, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, IFT80, IQCJ, SCARNA7, ARL14) 0.294094928304424 9 0.239940501884206 1.12763882941228 1032 0.380243061029117 4 3 1 -6.75677952236329 LTS-001 chr3 160791639 160793777 2139 * character(0) 0.439 1 NA 1.17190450908144 43 0.263666926371162 4 4 0 -5.76441889513998 LTS-001 chr3 160793778 172349216 11555439 * c(LOC100128164, LOC101243545, PDCD10, OTOL1, WDR49, LRRC34, SPTSSB, RPL22L1, MECOM, SLITRK3, TNIK, GHSR, GPR160, GOLIM4, LRRIQ4, SAMD7, TMEM212, CLDN11, NMD3, SERPINI1, SERPINI2, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, BCHE, LINC01330, LINC01192, SI, FNDC3B, SKIL, SLC2A2, MIR551B, MIR569, TERC, SEC62, ZBBX, LRRC31, PHC3, ACTRT3, B3GALNT1, TNFSF10, EGFEM1P) 0.455934001223663 47 0.0334456771646064 1.11786381916828 3749 0.35477546599906 4 2 2 -7.01042186356832 LTS-001 chr3 172349217 172350135 919 * NCEH1 0 1 NA 1.06267250615225 19 0.192104229749684 4 4 0 -5.7644964640678 LTS-001 chr3 172350136 178741032 6390897 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, ECT2, NLGN1, NAALADL2, NCEH1, ZMAT3, TBL1XR1, SPATA16) 0.362113590274775 12 0.179492635115222 1.14007411474163 997 0.381262285878456 4 3 1 -6.74321275755388 LTS-001 chr3 178741033 178741082 50 * ZMAT3 0.465 1 NA 0.708275596125956 2 0.252437120883597 2 2 0 -5.76441443101471 LTS-001 chr3 178741083 183753930 5012848 * c(LINC00888, ABCC5, ABCC5-AS1, DNAJC19, TTC14, HTR3D, MCF2L2, ATP11B, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, MAP6D1, FXR1, B3GNT5, ACTL6A, USP13, KLHL6) 0.45201863033017 34 0.0491560231991543 1.09874073434738 3447 0.264835205379161 4 2 2 -6.88745966279539 LTS-001 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.31 1 NA NA NA NA NA LTS-001 chr3 183754123 194084153 10330031 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, NA NA NA NA NA NA NA NA NA LTS-001 IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.444824299998423 196 0.0828974867045809 1.16575846124838 7432 0.418960554176435 4 2 2 -6.75239695218896 LTS-001 NA NA NA NA LTS-001 chr3 194084154 194084194 41 * LRRC15 NA 0 NA 0.968 1 NA NA NA NA NA LTS-001 chr3 194084195 195102787 1018593 * c(TMEM44-AS1, LOC100507391, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, LINC00884, LSG1, ATP13A3, TMEM44) 0.452633858741194 27 0.0365443180191829 1.0794565942973 848 0.236528469514 4 2 2 -6.92060467689315 LTS-001 chr3 195102788 195245805 143018 * c(MIR5692C1, ACAP2, PPP1R2) 0.399 1 NA 1.00457773628081 68 0.228630550595269 3 3 0 -5.76729321096824 LTS-001 chr3 195245806 195345045 99240 * c(APOD, PPP1R2) NA 0 NA 1.12390613686298 58 0.234405588102795 4 NA NA -5.76484490801878 LTS-001 chr3 195345046 195345110 65 * character(0) 0.338 1 NA 2.002 1 NA NA NA NA NA LTS-001 chr3 195345111 195476016 130906 * c(MUC20, MUC4, MIR570, SDHAP2) 0.35971141767602 24 0.0595949948049087 1.58904541098119 182 0.727091889731393 9 6 3 -6.74890117901071 LTS-001 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.894 1 NA NA NA NA NA LTS-001 chr3 195477782 195782176 304395 * c(TNK2, SDHAP1, MUC4, TFRC) 0.326101831136908 15 0.151215645449045 1.15777915454766 460 0.267337375228016 4 3 1 -6.73814173301761 LTS-001 chr3 195782177 195782184 8 * TFRC 0.439 1 NA 1.6847372558844 2 0.138592929112563 7 7 0 -5.76441014535867 LTS-001 chr3 195782185 197769542 1987358 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.450027249444953 66 0.0758250178591033 1.07385727653613 2720 0.257418967129526 4 2 2 -6.83528930622217 LTS-001 chr3 197769543 197770512 970 * LMLN NA 0 NA 1.06891198162336 23 0.18458903183 4 NA NA -5.76449422154288 LTS-001 chr4 53174 53360 187 * c(ZNF595, ZNF718) 0.167 1 NA 0.888173672054164 3 0.269568173195576 3 3 0 -5.76442027003745 LTS-001 chr4 53361 3227419 3174059 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, NA NA NA NA NA NA NA NA NA LTS-001 ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.261195311230758 131 0.0628048716931811 0.775323279552642 5221 0.211435574238408 2 2 0 -6.73681732377634 LTS-001 NA NA NA NA LTS-001 chr4 3227420 3227457 38 * HTT NA 0 NA 0.817 1 NA NA NA NA NA LTS-001 chr4 3227458 3514086 286629 * c(DOK7, HTT, HGFAC, MSANTD1, LRPAP1, RGS12) 0.270789256187968 26 0.0602171455267071 0.837318113724378 694 0.194212304949009 2 2 0 -6.76134155330798 LTS-001 chr4 3514087 3589553 75467 * c(LINC00955, LRPAP1) NA 0 NA 0.816481574740668 58 0.179173373304042 2 NA NA -5.76735057858847 LTS-001 chr4 3589554 3589560 7 * LINC00955 0.407 1 NA 1.888 1 NA NA NA NA NA LTS-001 chr4 3589561 3591714 2154 * LINC00955 0.434559378904182 23 0.0614200209405045 1.19236098626753 51 0.332089215511169 4 2 2 -6.73306213452546 LTS-001 chr4 3591715 3591786 72 * LINC00955 NA 0 NA 1.271 1 NA NA NA NA NA LTS-001 chr4 3591787 3768424 176638 * c(LOC100133461, ADRA2C, LINC00955) NA 0 NA 0.803 1 NA NA NA NA NA LTS-001 chr4 3768425 3770069 1645 * ADRA2C 0.252 1 NA 0.875296149711891 35 0.216413217415824 3 3 0 -5.76460359355079 LTS-001 chr4 3770070 13383284 9613215 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, CLNK, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, HMX1, FAM86EP, USP17L6P, USP17L9P, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, AFAP1, NA NA NA NA NA NA NA NA NA LTS-001 S100P, DEFB131, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, KIAA0232, WDR1, HS3ST1) 0.256302104836738 165 0.0576209534750958 0.803068439456206 4451 0.21653291014975 2 2 0 -6.84918695228182 LTS-001 NA NA NA NA LTS-001 chr4 13383285 13461452 78168 * RAB28 NA 0 NA 1.376 1 NA NA NA NA NA LTS-001 chr4 13461453 15003768 1542316 * c(MIR5091, LINC01085, BOD1L1, LINC01097, LINC01096, CPEB2-AS1, NKX3-2, RAB28) 0.187534477906116 3 0.00200000000000002 1.21892705912063 417 0.302350078979942 9 8 1 -9.05024804284067 LTS-001 chr4 15003769 30498993 15495225 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, CPEB2, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FBXL5, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, SLIT2, CD38, FGFBP1 NA NA NA NA NA NA NA NA NA LTS-001 ) 0.27910738488057 67 0.0478866585484729 0.777013068034637 4590 0.308463376311946 2 2 0 -6.78596415686207 LTS-001 NA NA NA NA LTS-001 chr4 30498994 30722009 223016 * character(0) NA 0 NA 1.392 1 NA NA NA NA NA LTS-001 chr4 30722010 31144692 422683 * PCDH7 NA 0 NA 1.25539375550626 151 0.240688700598982 5 NA NA -5.77894695699533 LTS-001 chr4 33012453 49019232 16006780 * c(MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, PTTG2, LIAS, ARAP2, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, KCTD8, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, PGM2, C4orf19, CHRNA9, N4BP2, ATP10D, NA NA NA NA NA NA NA NA NA LTS-001 NWD2, SLAIN2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, TLR10, PHOX2B, FAM114A1) 0.267022619858951 178 0.0671299477608232 0.763060091594887 7522 0.203177552410711 2 2 0 -6.84407524514569 LTS-001 NA NA NA NA LTS-001 chr4 49019233 49064107 44875 * CWH43 NA 0 NA 0.754576771414669 42 0.189686494822996 2 NA NA -5.76523367542268 LTS-001 chr4 52709193 52960908 251716 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0.256 1 NA 0.846599152836441 390 0.216169316196313 2 2 0 -5.78600775494734 LTS-001 chr4 52960909 56238886 3277978 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.260183330975476 20 0.0712403456063014 0.813862448468048 1295 0.194864424724478 2 2 0 -6.82774136597456 LTS-001 chr4 56238887 69363297 13124411 * c(FTLP10, EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, TMPRSS11B, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, POLR2B, PPAT, UBA6-AS1, LOC550113, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.261874053550578 66 0.0598503417138399 0.776771747509322 3313 0.198304098396594 2 2 0 -6.73819834854942 LTS-001 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.662 1 NA NA NA NA NA LTS-001 chr4 69402959 69512430 109472 * UGT2B17 0.261 1 NA 1.47005491386694 44 0.338155067822873 6 6 0 -5.76489206739585 LTS-001 chr4 69512431 69512573 143 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-001 chr4 69512574 89857615 20345042 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, EPGN, NA NA NA NA NA NA NA NA NA LTS-001 AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, PKD2, NUDT9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ) 0.264135677914421 188 0.0651492686846833 0.777348586093145 12556 0.198333313614254 2 2 0 -6.73682158224378 LTS-001 NA NA NA NA LTS-001 chr4 89857616 89857759 144 * FAM13A NA 0 NA 0.899 1 NA NA NA NA NA LTS-001 chr4 89857760 98109018 8251259 * c(FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.259528303720494 61 0.0587154246590806 0.843336494644057 1812 0.361780274739978 2 2 0 -6.96018312589649 LTS-001 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.688 1 NA NA NA NA NA LTS-001 chr4 98480011 113434754 14954744 * c(MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, SLC9B2, SLC9B1, SGMS2, EGF, EIF4E, ENPEP, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, H2AFZ, HADH, CFI, LRIT3, PCNAP1, MANBA, MTTP, NFKB1, CISD2, LEF1, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, AP1AR, NA NA NA NA NA NA NA NA NA LTS-001 BDH2, INTS12, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, ETNPPL, TACR3, UBE2D3, ELOVL6, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CASP6, C4orf17, COL25A1, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, TRMT10A, TBCK) 0.272754942285626 148 0.0553215487343459 0.776365959491199 6964 0.296573255464145 2 2 0 -6.74699211755852 LTS-001 NA NA NA NA LTS-001 chr4 113434755 114682690 1247936 * c(MIR1243, ANK2, MIR302B, LARP7, ZGRF1, NEUROG2, CAMK2D) 0.194027115802753 11 0.0354441942931548 1.1484134673496 1027 0.265739751081573 4 4 0 -6.82154744208599 LTS-001 chr4 114682691 114682693 3 * CAMK2D NA 0 NA 0.684 1 NA NA NA NA NA LTS-001 chr4 114682694 119428120 4745427 * c(SNHG8, MIR1973, TRAM1L1, NDST4, SNORA24, MIR577, UGT8, ARSJ, CAMK2D, PRSS12, NDST3) 0.311511948856665 8 0.0700020407865779 0.832201432853457 651 0.192307142226792 2 2 0 -7.29312567227308 LTS-001 chr4 119428121 119431050 2930 * character(0) NA 0 NA 0.528 1 NA NA NA NA NA LTS-001 chr4 119431051 119465564 34514 * CEP170P1 NA 0 NA 0.484622095798953 89 0.314600882501439 0 NA NA -5.76968917405963 LTS-001 chr4 119465565 119472232 6668 * CEP170P1 NA 0 NA 0.788 1 NA NA NA NA NA LTS-001 chr4 119472233 173962331 54490099 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, MIR4799, MIR3688-2, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, CLCN3, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, CPE, CTSO, ZNF827, SH3D19, MGAT4D, FAM218A, C4orf45, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, SYNPO2, EDNRA, ELF2, C4orf46, TIGD4, NA NA NA NA NA NA NA NA NA LTS-001 TMEM154, TMEM192, ETFDH, FABP2, FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, KIAA0922, TRIM2, ANP32C, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, GK3P, INTU, ARFIP1, ZNF330, GLRB, LINC01091, RNF175, GRIA2, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, ANXA5, LOC340017, PRSS48, IL2, IL15, TRIM61, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, GALNTL6, NDUFC1, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 AADAT, FAM198B, MYOZ2, ASIC5, GATB, PLRG1, EXOSC9, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, HPF1, MARCH1, LARP1B, BBS7, FBXW7, TMEM144, TMA16, MAML3, DDX60, TMEM184C, PDGFC, FSTL5, ANKRD50, RNF150, PCDH10, FNIP2, SH3RF1, METTL14, IL21, RXFP1, ABCE1, SCOC, RPS3A, MSMO1, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, CEP170P1, LOC645513, HHIP-AS1, C4orf51, MIR578, TDO2, TLL1, TLR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TRPC3, CETN4P, FAM160A1, UCP1, NDNF, FAT4, ARHGAP10, MAP9, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, TKTL2, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, CBR4, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PRMT9, DDX60L, LRAT, NAF1, RAPGEF2, MFAP3L, LRBA, SEC24D) 0.269625040814103 307 0.0698999790285449 0.789414854508111 18177 0.277119957430595 2 2 0 -6.79589812017704 LTS-001 NA NA NA NA LTS-001 chr4 173962332 173962378 47 * character(0) NA 0 NA 0.664 1 NA NA NA NA NA LTS-001 chr4 173962379 186536317 12573939 * c(CLDN24, MIR1305, MIR4276, MIR3945, LINC01093, ADAM29, SCRG1, WDR17, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, CCDC110, FBXO8, PDLIM3, GPM6A, LINC01098, SLC25A4, HMGB2, HPGD, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, GALNT7, CLDN22, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, NA NA NA NA NA NA NA NA NA LTS-001 GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, SAP30, LOC90768, HAND2) 0.303586551226081 99 0.0714452722178596 0.703798519272051 4126 0.267360644097538 2 2 0 -7.85194193009931 LTS-001 NA NA NA NA LTS-001 chr4 186536318 186539662 3345 * SORBS2 NA 0 NA 0.846 1 NA NA NA NA NA LTS-001 chr4 186539663 190981476 4441814 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.295256786153183 39 0.06510991433468 0.771720229520253 1301 0.201711944348557 2 2 0 -6.86720418677211 LTS-001 chr4 190981477 190981567 91 * character(0) NA 0 NA 0.773 1 NA NA NA NA NA LTS-001 chr5 140347 163205 22859 * PLEKHG4B 0.495 1 NA 1.54477290743275 69 0.330748699879974 6 6 0 -5.76446338935088 LTS-001 chr5 163206 678062 514857 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.424528074504378 86 0.0775412480144526 1.663662832625 1040 0.45621712740663 7 4 3 -6.73417909402449 LTS-001 chr5 678063 747535 69473 * TPPP 0.247 1 NA 2.29985651196096 31 1.26719177033143 10 10 0 -5.76442444301936 LTS-001 chr5 747536 840575 93040 * ZDHHC11 0.325557413603771 12 0.0939749724902618 1.78813323441884 130 0.924906178387473 7 5 2 -6.74299251948337 LTS-001 chr5 840576 848710 8135 * ZDHHC11 0.468 1 NA 1.36287443386674 15 0.488558004549638 5 5 0 -5.76442235998404 LTS-001 chr5 848711 1882086 1033376 * c(MIR4277, LOC100506688, MIR4457, MIR4635, SLC12A7, SLC6A19, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, BRD9, TERT, SDHAP3, LOC728613, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.44689968537839 58 0.0397679901799451 1.75701957160768 1290 0.416874585546363 8 4 4 -6.80931540592366 LTS-001 chr5 1882087 25190720 23308634 * c(SNORD123, LOC100130744, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4637, MIR4636, CDH10, CDH12, CDH18, MARCH6, BASP1, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, FBXL7, ICE1, LINC01018, LINC01019, LOC285692, LOC285696, LINC01020, LOC340107, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, IRX4, TAS2R1, PMCHL1, FAM134B, NA NA NA NA NA NA NA NA NA LTS-001 FAM105A, NSUN2, ANKH, PRDM9, ANKRD33B, SRD5A1, TRIO, GUSBP1, LOC729506, FASTKD3, IRX1, ROPN1L, MED10, OTULIN, SEMA5A, ZNF622) 0.43932378047261 102 0.0856846313370691 1.43418520836293 4878 0.359686059899927 6 3 3 -7.03137769060701 LTS-001 NA NA NA NA LTS-001 chr5 25190721 25190729 9 * character(0) NA 0 NA 1.145 1 NA NA NA NA NA LTS-001 chr5 25190730 44310492 19119763 * c(CCDC152, LOC100132356, CDH6, MIR4279, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, CDH9, EGFLAM-AS4, GDNF-AS1, PAIP1, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, FGF10, PDZD2, NNT, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, DROSHA, HMGCS1, LOC340113, PLCXD3, IL7R, C5orf34, ANXA2R, LIFR, NPR3, OXCT1, NA NA NA NA NA NA NA NA NA LTS-001 SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRKAA1, PRLR, CCL28, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, LINC01021, TMEM267, NIPBL-AS1, LOC648987, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, C6, LSP1P3, C7, C9, ZNF131, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.44874865910588 129 0.0658167326484051 1.03164625366808 9024 0.28074070067453 3 2 1 -7.66122306376297 LTS-001 NA NA NA NA LTS-001 chr5 44310493 45696278 1385786 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.1023934151986 179 0.298093844058663 4 NA NA -5.77886941726616 LTS-001 chr5 49692017 49694713 2697 * EMB 0 1 NA 0.717057220544299 49 0.22569219489547 2 2 0 -5.7646351550246 LTS-001 chr5 49694714 61779988 12085275 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, KIF2A, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, LOC642366, SMIM15, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, NA NA NA NA NA NA NA NA NA LTS-001 PLPP1, HSPB3, NDUFAF2) 0.284978093699135 97 0.0636777098382201 0.729695991178908 4796 0.182979981299679 2 2 0 -7.62706261765781 LTS-001 NA NA NA NA LTS-001 chr5 61779989 61781203 1215 * IPO11 NA 0 NA 0.95 1 NA NA NA NA NA LTS-001 chr5 61781204 69373289 7592086 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, TRAPPC13, SERF1A, CCNB1, MRPS36) 0.252829610201787 55 0.0726574593369903 0.776184111495589 3448 0.301614139742847 2 2 0 -6.75110179863242 LTS-001 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.363 1 NA NA NA NA NA LTS-001 chr5 69717474 70357226 639753 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) 0.226566536311525 2 0.0304055915910215 0.509940343683081 65 0.225783505478487 2 2 0 -8.68753705070776 LTS-001 chr5 70357227 70366434 9208 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.573 1 NA NA NA NA NA LTS-001 chr5 70366435 75757563 5391129 * c(GUSBP9, MIR4804, MIR4803, COL4A3BP, NSA2, IQGAP2, FCHO2, TMEM171, TMEM174, POC5, ZNF366, SV2C, MRPS27, ANKRD31, FAM169A, HEXB, HMGCR, TNPO1, MAP1B, NAIP, GCNT4, POLK, PMCHL2, BDP1, ANKRA2, MCCC2, ARHGEF28, LOC647859, BTF3, ANKDD1B, PTCD2, UTP15, GFM2, ENC1, CARTPT) 0.281005782297447 51 0.0659061067122068 0.76518324089722 3222 0.214498094559565 2 2 0 -6.79396948553574 LTS-001 chr5 75757564 75858115 100552 * IQGAP2 NA 0 NA 0.203 1 NA NA NA NA NA LTS-001 chr5 75858116 75914513 56398 * c(IQGAP2, F2RL2) NA 0 NA 0.234219583813779 123 0.867528858927224 0 NA NA -5.77889078464895 LTS-001 chr5 75914514 75918903 4390 * c(IQGAP2, F2RL2) NA 0 NA 0.685 1 NA NA NA NA NA LTS-001 chr5 75918904 88044895 12125992 * c(CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, TMEM161B-AS1, MIR3977, EDIL3, LHFPL2, IQGAP2, CKMT2, JMY, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, TMEM161B, PAPD4, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, OTP, SSBP2, BHMT2, SERINC5, RNU5E-1, NBPF22P, DMGDH, ANKRD34B, MTX3, MIR9-2, ARSB, MEF2C, CRSP8P, MSH3, AGGF1, WDR41, RASA1, RASGRF2, RPS23, BHMT, LOC644936, LINC00461, SCARNA18, SNORA47, NA NA NA NA NA NA NA NA NA LTS-001 TBCA, THBS4, ZBED3-AS1, XRCC4, ATG10, ZCCHC9, ZBED3, SPZ1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, ZFYVE16) 0.256652390643084 111 0.0685724829781263 0.760209565011874 5376 0.334818681222608 2 2 0 -6.78464890279428 LTS-001 NA NA NA NA LTS-001 chr5 88044896 88214966 170071 * MEF2C NA 0 NA 1.19396242740158 61 0.176260723426834 4 NA NA -5.76977583770486 LTS-001 chr5 88214967 88215021 55 * character(0) NA 0 NA 0.952 1 NA NA NA NA NA LTS-001 chr5 88215022 90666640 2451619 * c(MIR3660, POLR3G, CETN3, LYSMD3, MBLAC2, ARRDC3, ADGRV1) 0.287943788460692 24 0.053713393331537 0.783797453962052 1064 0.18853149108078 2 2 0 -6.84131149508665 LTS-001 chr5 90666641 94903803 4237163 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, KIAA0825, NR2F1-AS1, ARRDC3, NR2F1, MCTP1, FAM172A, SLF1, TTC37) 0.262572175455868 6 0.0295612358785397 0.71107392415588 1101 0.16663831420141 2 2 0 -7.43391943935916 LTS-001 chr5 94903804 94916574 12771 * ARSK NA 0 NA 1.12 1 NA NA NA NA NA LTS-001 chr5 94916575 95726398 809824 * c(ARSK, LINC01554, RHOBTB3, ELL2, GLRX, GPR150, RFESD, PCSK1, MIR583, SPATA9) 0.185956467710257 20 0.0574272079290498 1.0006363917821 631 0.267634028092904 4 4 0 -6.8620955697709 LTS-001 chr5 95726399 95726401 3 * PCSK1 NA 0 NA 0.828 1 NA NA NA NA NA LTS-001 chr5 95726402 96367779 641378 * c(LNPEP, PCSK1, ERAP1, ERAP2, CAST) 0.273912236497882 44 0.0566364234471771 0.719457451520053 878 0.266684388473253 2 2 0 -6.78292791012579 LTS-001 chr5 96367780 96371342 3563 * character(0) 0.393 1 NA 1.03297671410033 73 0.247002711364903 3 3 0 -5.7645807737106 LTS-001 chr5 96371343 110464932 14093590 * c(LOC100133050, LOC100289230, LOC100289673, LINC01023, CHD1, SLCO6A1, WDR36, LIX1, EFNA5, FER, PPIP5K2, RGMB, FAM174A, SLCO4C1, MAN2A1, RGMB-AS1, PAM, GIN1, RIOK2, TMEM232, FBXL17, ST8SIA4, NUDT12, TSLP, C5orf30, SLC25A46, RAB9BP1, PJA2) 0.27390468566827 65 0.0689096154114493 0.740541528652138 2843 0.23155839329804 2 2 0 -7.14102560220807 LTS-001 chr5 110464933 115362234 4897302 * c(TMED7-TICAM2, STARD4-AS1, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, STARD4, WDR36, CCDC112, DCP2, LVRN, APC, TICAM2, KCNN2, MCC, TMED7, PGGT1B, EPB41L4A-AS2, TRIM36, FEM1C, EPB41L4A, YTHDC2, SNORA13, SRP19, REEP5, CAMK4, TSSK1B, ATG12, NREP) 0.307766041372405 100 0.0645610477678986 0.679970185208886 2864 0.171212732324543 1 1 0 -8.28816702657719 LTS-001 chr5 115362235 129522129 14159895 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, DMXL1, ADAMTS19, LVRN, FBN2, TNFAIP8, DTWD2, SLC27A6, SNX24, HSD17B4, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, COMMD10, PHAX, PPIC, ZNF608, SEMA6A, CTXN3, ARL14EPL, LINC01184, SLC12A2, GRAMD3, SNX2, LINC00992, MEGF10, PRDM6, FTMT, SNCAIP) 0.272704694886067 66 0.0465449753672159 0.784584337865008 4244 0.24190217119635 2 2 0 -6.75424582646133 LTS-001 chr5 129522130 132437499 2915370 * c(MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, RAPGEF6, ZCCHC10, LOC553103, CDC42SE2, CCNI2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.271863652065198 48 0.061729215211586 0.728696838975873 2778 0.249848948716366 2 2 0 -6.86752001044989 LTS-001 chr5 132437500 132556621 119122 * c(FSTL4, HSPA4) 0 1 NA 0.833130005091575 145 0.881266102649002 2 2 0 -5.76480923704423 LTS-001 chr5 132556622 132939786 383165 * c(MIR1289-2, FSTL4) NA 0 NA 0.722253889073307 61 0.179658625893452 2 NA NA -5.80629939614828 LTS-001 chr5 132939787 133291280 351494 * c(FSTL4, C5orf15) NA 0 NA 1.221 1 NA NA NA NA NA LTS-001 chr5 133291281 134332018 1040738 * c(MIR3661, MIR4461, SEC24A, C5orf24, JADE2, CATSPER3, SAR1B, CDKL3, PPP2CA, C5orf15, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.154895830676582 5 0.0818089237186262 1.05863710418846 1505 0.224833129079427 4 4 0 -6.86816280204793 LTS-001 chr5 134332019 136957927 2625909 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.165681366131243 36 0.0387094488280501 1.19173211564924 1219 0.322697804734802 4 4 0 -6.83998457317823 LTS-001 chr5 136957928 136961462 3535 * KLHL3 NA 0 NA 0.841 1 NA NA NA NA NA LTS-001 chr5 136961463 139919066 2957604 * c(MIR874, LINC01024, KIF20A, BRD8, HNRNPA0, CTNNA1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, TMEM173, PROB1, ANKHD1-EIF4EBP3, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, ANKHD1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, CDC23, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.183711748961813 33 0.0597195307121954 1.07901232698261 3499 0.262328679875865 4 4 0 -6.82879766917679 LTS-001 chr5 139919067 139919129 63 * c(ANKHD1-EIF4EBP3, ANKHD1) NA 0 NA 1.678 1 NA NA NA NA NA LTS-001 chr5 139919130 140553623 634494 * c(SRA1, APBB3, SLC35A4, ZMAT2, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, EIF4EBP3, CD14, PCDHA9) 0.174643603916612 57 0.0634160536824995 1.13639095394941 1948 0.284673731239781 4 4 0 -6.73820225381452 LTS-001 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.294 1 NA NA NA NA NA LTS-001 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.195 1 NA 0.405479623260782 60 0.354560175938559 0 0 0 -5.76441767635752 LTS-001 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.39 1 NA NA NA NA NA LTS-001 chr5 140559822 146833422 6273601 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, GPR151, PRELID2, SH3RF2, PLAC8L1, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, NA NA NA NA NA NA NA NA NA LTS-001 PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, ARAP3, TAF7, LOC729080, NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.187072405711711 119 0.0485625447441712 1.11496479694596 5006 0.286316643773832 4 4 0 -6.7804588504566 LTS-001 NA NA NA NA LTS-001 chr5 146833423 148045262 1211840 * c(SPINK5, SCGB3A2, SPINK13, JAKMIP2-AS1, DPYSL3, HTR4, C5orf46, SPINK6, SPINK14, SPINK9, SPINK1, SH3TC2, FBXO38, SPINK7, JAKMIP2) 0.120373317086161 24 0.0432856831102253 1.49050455619202 859 0.458020876443632 7 7 0 -6.7913212907217 LTS-001 chr5 148045263 148206144 160882 * c(HTR4, SH3TC2) NA 0 NA 0.974 1 NA NA NA NA NA LTS-001 chr5 148206145 150036700 1830556 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, ADRB2, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, PDE6A, PDGFRB, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, CD74) 0.166516367991193 61 0.0456917206212825 1.16725464524752 3199 0.283446144346771 4 4 0 -6.79158470640452 LTS-001 chr5 150036701 175386655 25349955 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, G3BP1, TNIP1, SLU7, CPLX2, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, C5orf47, C5orf58, LSM11, ZNF300P1, NUDCD2, UBLCP1, ADRA1B, NKX2-5, SLC36A2, CREBRF, PPP1R2P3, FAM71B, RNF145, DOCK2, DRD1, DUSP1, EBF1, SLC36A1, FABP6, FAT2, FOXI1, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, NA NA NA NA NA NA NA NA NA LTS-001 GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, HMP19, NEURL1B, SPDL1, THG1L, GALNT10, RBM22, NMUR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ERGIC1, TENM2, RARS, ZBED8, SGCD, RANBP17, SLIT3, BNIP1, SPARC, SNORA74B, STK10, MIR585, TTC1, CCNJL, PANK3, SAP30L, CPEB4, THOC3, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1) 0.18319561314045 221 0.0559107309140663 1.11364982459426 11882 0.293059215861861 4 4 0 -6.88193101437297 LTS-001 NA NA NA NA LTS-001 chr5 175386656 175387354 699 * THOC3 NA 0 NA 0.28171345758473 40 0.22091041808958 0 NA NA -5.76567243094077 LTS-001 chr5 175387355 175394264 6910 * THOC3 NA 0 NA 0.625688885270993 51 0.449622645267401 1 NA NA -5.76445620284188 LTS-001 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.35 1 NA NA NA NA NA LTS-001 chr5 175395033 175477777 82745 * THOC3 NA 0 NA 2.04450505663875 49 1.39632305836913 9 NA NA -5.76441224048037 LTS-001 chr5 175477778 175511999 34222 * FAM153B NA 0 NA 0.998 1 NA NA NA NA NA LTS-001 chr5 175512000 177075846 1563847 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.172210950763113 60 0.0465976254820454 1.11585981820967 3173 0.285253636756852 4 4 0 -6.75964813201965 LTS-001 chr5 177075847 177210850 135004 * c(LOC202181, FAM153A) NA 0 NA 0.632783712022158 50 0.313899259154843 1 NA NA -5.76723894406523 LTS-001 chr5 177210851 177220301 9451 * character(0) NA 0 NA 1.215 1 NA NA NA NA NA LTS-001 chr5 177220302 177550723 330422 * c(N4BP3, PROP1, FAM153C, LOC728554) 0.176744193477684 12 0.0245054106579578 1.17228533841102 244 0.58438719110279 4 4 0 -6.7460198643573 LTS-001 chr5 177550724 177551169 446 * N4BP3 0.249 1 NA 1.18675669363817 9 0.236949420294243 4 4 0 -5.76441575662788 LTS-001 chr5 177551170 177551289 120 * N4BP3 0.231 1 NA 0.963811454204484 5 0.110587974029729 3 3 0 -5.7644101360578 LTS-001 chr5 177551290 180374817 2823528 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, ZNF354A, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.2683996531465 107 0.0598970947908175 0.776867361473907 3490 0.206769175712614 2 2 0 -6.73559144099336 LTS-001 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.61 1 NA NA NA NA NA LTS-001 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 1.43510779528928 63 0.246620074895629 6 NA NA -5.76592233317804 LTS-001 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.729 1 NA NA NA NA NA LTS-001 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.24287904154172 16 0.0516365503624451 0.776573359655517 526 0.180321907860535 2 2 0 -6.84147725341544 LTS-001 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.875098740527968 17 0.209198013431126 3 NA NA -5.76452375686205 LTS-001 chr6 203389 335251 131863 * DUSP22 0.372 1 NA 1.24122499352327 33 0.206215525126093 5 5 0 -5.77326640752333 LTS-001 chr6 335252 2994379 2659128 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, IRF4, LINC01011, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, FOXQ1) 0.329942198393238 53 0.0642281401824132 1.29345247440943 1128 0.394374960197217 4 3 1 -6.89225773687506 LTS-001 chr6 2994380 3006693 12314 * NQO2 NA 0 NA 1.418 1 NA NA NA NA NA LTS-001 chr6 3006694 24454196 21447503 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, ECI2, CAP2, FARS2, RPP40, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, FAM217A, SIRT5, RNF144B, FAM50B, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, MYLIP, HIVEP1, ID4, TUBB2B, NA NA NA NA NA NA NA NA NA LTS-001 C6orf52, KAAG1, JARID2, NHLRC1, PSMG4, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, GFOD1, ELOVL2, CDKAL1, PAK1IP1, PRL, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SOX4, BPHL, SSR1, MIR548A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, TXNDC5, TMEM14B, RIOK1, DTNBP1, ADTRP, RIPK1, PRPF4B, GCM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CD83, CDYL, LY86, EEF1E1, NUP153) 0.326521616757164 198 0.0746610155364719 1.35390042808177 8609 0.575574256853883 5 4 1 -6.8623712561208 LTS-001 NA NA NA NA LTS-001 chr6 24454197 24463020 8824 * GPLD1 0.43 1 NA 1.49091315147369 19 0.345127495723093 6 6 0 -5.76441997219852 LTS-001 chr6 24463021 30882203 6419183 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, GPLD1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA LTS-001 HCG11, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, ZSCAN31, ZNF192P1, SLC17A1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, ZSCAN12, KIAA0319) 0.36863179150908 293 0.0587415158807674 1.34848055344724 8071 0.70683743500942 6 4 2 -6.84590052442798 LTS-001 NA NA NA NA LTS-001 chr6 30882204 30882277 74 * character(0) 0.316 1 NA 1.17199106724967 3 0.390102977857557 4 4 0 -5.7644102722254 LTS-001 chr6 30882278 30994484 112207 * character(0) 0.33175408754554 35 0.0377874417803392 1.44695694708376 379 0.384654544359197 7 5 2 -6.75869517688814 LTS-001 chr6 30994485 30994502 18 * character(0) NA 0 NA 1.272 1 NA NA NA NA NA LTS-001 chr6 30994503 30996886 2384 * character(0) 0.247 1 NA 0.933970604974813 39 0.347670316712266 3 3 0 -5.76442147271917 LTS-001 chr6 30996887 30996987 101 * character(0) NA 0 NA 1.594 1 NA NA NA NA NA LTS-001 chr6 30996988 32557617 1560630 * HLA-DRB5 0.331649464311318 272 0.0858919517739069 1.43250058211916 5372 8.46041285071201 7 5 2 -6.73625038938314 LTS-001 chr6 32557618 32605164 47547 * character(0) 0.257 1 NA 1.68239508972748 3 0.979756602427358 7 7 0 -5.76441222604891 LTS-001 chr6 32605165 32610976 5812 * HLA-DQA1 0.174090835851983 37 0.086183136593147 1.75057383353265 83 1.36897080242425 10 9 1 -6.73316094077375 LTS-001 chr6 32610977 32611003 27 * HLA-DQA1 0.216 1 NA 2.909 1 NA NA NA NA NA LTS-001 chr6 32611004 32634350 23347 * HLA-DQA1 0.203702612962189 47 0.0769558483170335 2.13890633536072 109 1.84286693858969 13 11 2 -6.73351335747041 LTS-001 chr6 32634351 32634373 23 * character(0) 0.27 1 NA 2.332 1 NA NA NA NA NA LTS-001 chr6 32634374 32725666 91293 * character(0) 0.280073849958051 21 0.0889002115804435 1.96121214833168 75 1.04986308983 9 7 2 -6.73351968726124 LTS-001 chr6 32725667 32725671 5 * character(0) NA 0 NA 1.338 1 NA NA NA NA NA LTS-001 chr6 32725672 32906687 181016 * character(0) 0.349626803703785 30 0.0861435583411677 1.28803672435229 460 0.35452517247836 4 3 1 -6.7525905352449 LTS-001 chr6 32906688 32908398 1711 * character(0) NA 0 NA 0.94 1 NA NA NA NA NA LTS-001 chr6 32908399 32947851 39453 * character(0) 0.427 1 NA 1.03056826130102 161 0.216708322341459 3 3 0 -5.76670314187132 LTS-001 chr6 32947852 32975257 27406 * character(0) 0.304839086828441 12 0.0439541772414147 1.55308242448748 98 0.535626419991165 8 6 2 -6.73512064200435 LTS-001 chr6 32975258 33036290 61033 * character(0) 0.48 1 NA 1.57610309921886 43 5.33651256931332 6 6 0 -5.76441226349253 LTS-001 chr6 33036291 33054860 18570 * character(0) NA 0 NA 2.45213805821606 102 26.0030447250806 11 NA NA -5.76441013603177 LTS-001 chr6 33054861 36824399 3769539 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, FANCE, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, ANKS1A, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PPARD, UHRF1BP1, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, NA NA NA NA NA NA NA NA NA LTS-001 TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.440057052794768 90 0.0811399809241384 1.04353368222445 5817 0.713552834952299 4 2 2 -6.77527776561072 LTS-001 NA NA NA NA LTS-001 chr6 36824400 36892326 67927 * c(C6orf89, PPIL1) NA 0 NA 1.00416455661529 85 0.216848182961678 3 NA NA -5.76590291409253 LTS-001 chr6 36892327 36922168 29842 * c(PI16, C6orf89) NA 0 NA 1.564 1 NA NA NA NA NA LTS-001 chr6 36922169 36976637 54469 * c(FGD2, PI16, MTCH1) 0.314 1 NA 1.38307754895012 159 0.237489506428309 5 5 0 -5.76529890254875 LTS-001 chr6 36976638 40399855 3423218 * c(LOC100131047, MIR4462, BTBD9, CCDC167, DNAH8, KIF6, TMEM217, FGD2, CMTR1, DAAM2, MDGA1, GLO1, GLP1R, LINC00951, MOCS1, PIM1, TBC1D22B, SAYSD1, LRFN2, ZFAND3, TDRG1, KCNK16, KCNK5, KCNK17, RNF8) 0.351381655112229 111 0.0650175834592932 1.42063087611329 2743 0.362270698763793 6 4 2 -6.8864884556185 LTS-001 chr6 40399856 42045619 1645764 * c(TOMM6, MIR4641, FRS3, APOBEC2, FOXP4, TAF8, TREML5P, ADCY10P1, OARD1, TSPO2, UNC5CL, USP49, TREML4, PRICKLE4, TREML1, TREML3P, MDFI, NFYA, PGC, TREM2, TREM1, LRFN2, BYSL, TFEB, TREML2, CCND3, NCR2, MED20) 0.397403500144943 29 0.162278116799888 1.07102172988357 1465 0.250173535622992 4 2 2 -6.83637679374876 LTS-001 chr6 42045620 42046079 460 * TAF8 0.479 1 NA 1.26578110457856 5 0.372808664062412 5 5 0 -5.76441498084249 LTS-001 chr6 42046080 57246969 15200890 * c(LINC01512, ANKRD66, MIR4647, MIR4642, MIR5685, MLIP-IT1, RCAN2, CRISP3, DNPH1, CNPY3, SLC22A7, CAPN11, IL17F, EFHC1, KLHDC3, TAF8, C6orf141, CRISP1, PTCRA, TCTE1, SLC29A1, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, FAM83B, ADGRF2, ICK, ENPP4, CUL9, UBR2, GLTSCR1L, CD2AP, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, ZNF451, FBXO9, ADGRF1, GNMT, TNFRSF21, TINAG, NA NA NA NA NA NA NA NA NA LTS-001 GCLC, RPL7L1, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, GUCA1A, GUCA1B, HCRTR2, HSP90AB1, SLC35B2, IL17A, GLYATL3, GFRAL, CRIP3, TRAM2-AS1, KLHL31, MIR206, MCM3, MEA1, MEP1A, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MIR133B, MUT, NFKBIE, MRPL2, CYP39A1, RAB23, PEX6, PGK2, PKHD1, CLIC5, POLH, HMGCLL1, GTPBP2, CENPQ, MRPS18A, MRPS10, LRRC1, PPP2R5D, TMEM63B, PRIM2, TRERF1, AARS2, XPO5, PTK7, KIAA1586, ENPP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PRPH2, RHAG, ELOVL5, C6orf132, RPS16P5, MRPL14, BMP5, DLK2, DST, SRF, TBCC, MIR586, TFAP2B, CRISP2, LOC730101, GSTA7P, VEGFA, PLA2G7, COL21A1, TFAP2D, TTBK1, SUPT3H, GCM1, PAQR8, RUNX2, RRP36, ABCC10, KLC4, MLIP, TJAP1, SLC25A27, BAG2, POLR1C, MAD2L1BP, TRAM2, CUL7, CDC5L) 0.432399760537906 192 0.0803025567910605 1.06722149097797 12033 0.245140600867666 4 2 2 -7.42830174840995 LTS-001 NA NA NA NA LTS-001 chr6 57246970 57372361 125392 * PRIM2 0.382 1 NA 1.11064867408929 11 0.256366534477494 4 4 0 -5.76557454236961 LTS-001 chr6 57372362 57512678 140317 * PRIM2 0.332027761543134 42 0.0682224618240114 1.18276135347323 86 0.500933068644191 4 3 1 -6.74100133268994 LTS-001 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.00258530968909 19 0.138219716605409 3 NA NA -5.81077209974779 LTS-001 chr6 62390154 64286972 1896819 * c(KHDRBS2, LGSN, PTP4A1) 0.43 1 NA 0.994582075322742 181 0.248909677889559 3 3 0 -5.78306561383302 LTS-001 chr6 64286973 73933981 9647009 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.37867482571012 36 0.0820615138995867 0.964615537616358 2519 0.265660025309325 3 2 1 -6.77328393503182 LTS-001 chr6 73933982 73935052 1071 * c(KHDC1L, KHDC1) NA 0 NA 0.7 1 NA NA NA NA NA LTS-001 chr6 73935053 74533740 598688 * c(KHDC1L, MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) NA 0 NA 0.856582190406423 792 0.172651336456252 2 NA NA -5.86820598112604 LTS-001 chr6 74533741 86227741 11694001 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, SNX14, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.381803877569775 35 0.11106150918986 0.966325227194123 3962 0.284699879147215 3 2 1 -6.74985730346523 LTS-001 chr6 86227742 86235834 8093 * SNX14 NA 0 NA 0.706 1 NA NA NA NA NA LTS-001 chr6 86235835 91296539 5060705 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.39699832289987 61 0.0671673548080656 0.91523640270044 3450 0.315164207268638 3 2 1 -6.81335179363177 LTS-001 chr6 91296540 97677118 6380579 * c(MIR4643, FUT9, KLHL32, EPHA7, UFL1, MMS22L, NDUFAF4, TSG1, MAP3K7, MANEA, GPR63, FHL5) 0.379350652167008 27 0.0533672434932017 1.00465732426947 879 0.253203511464694 3 2 1 -6.92474249690526 LTS-001 chr6 97677119 99282946 1605828 * c(MIR2113, MMS22L, POU3F2) NA 0 NA 0.879055210806037 87 0.190355530557691 3 NA NA -5.97941502881925 LTS-001 chr6 99282947 99283043 97 * POU3F2 NA 0 NA 0.636 1 NA NA NA NA NA LTS-001 chr6 99283044 99284532 1489 * POU3F2 0.262 1 NA 0.767371231827311 33 0.234732685649275 2 2 0 -5.76441447320406 LTS-001 chr6 99284533 108544324 9259792 * c(LIN28B-AS1, TSTD3, LOC100422737, ASCC3, BVES, SEC63, BVES-AS1, AIM1, SCML4, PNISR, FBXL4, OSTM1, GRIK2, LIN28B, C6orf203, COQ3, POU3F2, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM13, PRDM1, POPDC3, SIM1, NR2E1, MCHR2-AS1, MCHR2, FAXC, RTN4IP1, USP45, SNX3, CCNC, ATG5) 0.259638441148494 86 0.0569909489537935 0.768148447757819 3503 0.194708474564052 2 2 0 -6.77271624271661 LTS-001 chr6 108544325 108581942 37618 * SNX3 NA 0 NA 0.401 1 NA NA NA NA NA LTS-001 chr6 108581943 108883056 301114 * c(FOXO3, LACE1, SNX3) NA 0 NA 0.384037290008839 181 0.0921350751275204 0 NA NA -5.87788885418373 LTS-001 chr6 108883057 108984655 101599 * FOXO3 NA 0 NA 0.703 1 NA NA NA NA NA LTS-001 chr6 108984656 149732711 40748056 * c(UST-AS1, TRAPPC3L, LOC100130476, LINC00271, LOC100132735, LOC100287632, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, MIR5695, UST, LOC100996634, TRDN, CITED2, TRAF3IP2, HBS1L, SMPDL3A, RAB32, GTF3C6, MTFR2, TMEM200A, NUS1, IL22RA2, SLC18B1, SLC16A10, COL10A1, ADAT2, CLVS2, TAAR1, STXBP5, NCOA7, HINT3, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, NA NA NA NA NA NA NA NA NA LTS-001 RNF217, NKAIN2, OLIG3, TXLNB, EPB41L2, EYA4, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TAB2, TSPYL4, SASH1, HEY2, HEBP2, BRD7P3, FRK, VGLL2, FUCA2, FYN, TMEM244, FAM26E, MCM9, SHPRH, ASF1A, CCDC28A, MOXD1, AMD1, GJA1, PDE7B, SESN1, GPR6, LINC00326, PHACTR2-AS1, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, GRM1, DSE, HDAC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 HIVEP2, TAAR6, HSF2, SLC35D3, RSPH4A, IFNGR1, ECT2L, C6orf58, ARG1, KPNA5, HMGA1P7, SUMO4, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, SAMD5, LAMA2, LAMA4, MARCKS, MAN1A1, MAP3K5, FAM26F, FLJ46906, GSTM2P1, RFPL4B, MYB, NMBR, HDDC2, TUBE1, CDC40, RWDD1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, PLN, IL20RA, AHI1, VNN3, PKIB, ECHDC1, HYMAI, GOPC, ADGRG6, ARFGEF3, NHSL1, SERINC1, PTPRK, ABRACL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PBOV1, SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS12, PERP, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, LINC01625, ALDH8A1, MICAL1, SMPD2, MIR548B, TCF21, TNFAIP3, TPD52L1, TSPYL1, TPI1P3, METTL24, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, RNF217-AS1, EPM2A, FAM184A, ADGB, RNF146, SF3B5, TAAR8, ARMC2, FBXO30, RPF2, STX7, L3MBTL3, RSPO3, LTV1, REPS1, PEX3, DDO, SLC22A16, STX11, CD164, WISP3, VNN2, VNN1, WASF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TAAR5, MAP7, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1, ZBTB24, FIG4) 0.279301995956265 267 0.0727175927855605 0.773691014155862 18784 0.240262709082616 2 2 0 -6.78415724571444 LTS-001 NA NA NA NA LTS-001 chr6 149732712 149771699 38988 * c(TAB2, ZC3H12D) NA 0 NA 0.618 1 NA NA NA NA NA LTS-001 chr6 149771700 150209784 438085 * c(RAET1E-AS1, KATNA1, GINM1, RAET1E, ZC3H12D, NUP43, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.311678645424415 9 0.0656582058847179 0.708301091621056 736 0.205770321905535 1 1 0 -7.06868093300966 LTS-001 chr6 150209785 150210194 410 * c(RAET1E-AS1, RAET1E) NA 0 NA 1.002 1 NA NA NA NA NA LTS-001 chr6 150210195 151164459 954265 * c(RAET1E-AS1, RAET1E, RAET1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C) 0.258574743459849 32 0.0362553110681064 0.841263605189769 624 0.233255625006367 2 2 0 -6.81144948472532 LTS-001 chr6 151164460 151239846 75387 * c(MTHFD1L, PLEKHG1) NA 0 NA 0.858582147976494 83 0.315691955108345 2 NA NA -5.76858544278071 LTS-001 chr6 151239847 151243253 3407 * MTHFD1L NA 0 NA 1.347 1 NA NA NA NA NA LTS-001 chr6 151243254 151258127 14874 * MTHFD1L 0.13 1 NA 1.22693113407559 19 0.215725364175236 4 4 0 -5.76528822727639 LTS-001 chr6 151258128 152265283 1007156 * c(ESR1, MTHFD1L, RMND1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.159429632309499 26 0.0283517466562739 1.21746824066774 596 1.99491557232095 5 5 0 -6.74591117029762 LTS-001 chr6 152265284 152527397 262114 * c(ESR1, SYNE1) 0.149880053105147 16 0.0311458932552378 1.51012697253996 377 0.489944462064037 5 5 0 -6.76283340640664 LTS-001 chr6 152527398 152527402 5 * SYNE1 NA 0 NA 1.103 1 NA NA NA NA NA LTS-001 chr6 152527403 153308821 781419 * c(SYNE1, FBXO5, MTRF1L, VIP, MYCT1) 0.143792933169916 22 0.0404895368879739 1.27388127071221 948 0.46932529342839 5 5 0 -6.78644770678092 LTS-001 chr6 153308822 153310807 1986 * MTRF1L NA 0 NA 2.56713925676882 40 2.27736776699633 12 NA NA -5.76441020697629 LTS-001 chr6 153310808 156275821 2965014 * c(CNKSR3, SCAF8, IPCEF1, TIAM2, RGS17, CLDN20, OPRM1, NOX3, TFB1M, MTRF1L) 0.154685175085964 32 0.0427264366299926 1.21259350331588 983 0.335513665795051 5 5 0 -6.86516286728077 LTS-001 chr6 157098987 157150503 51517 * c(MIR4466, ARID1B) NA 0 NA 0.729589198886584 39 0.275035706183967 2 NA NA -5.76623577657468 LTS-001 chr6 157150504 157192676 42173 * ARID1B NA 0 NA 1.144 1 NA NA NA NA NA LTS-001 chr6 157192677 168363345 11170669 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, PNLDC1, C6orf118, OSTCP1, LINC01558, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, AFDN, LINC00602, PARK2, SNX9, MPC1, PLG, UNC93A, AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, AFDN-AS1, SLC22A1, NA NA NA NA NA NA NA NA NA LTS-001 SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.16185523423873 146 0.0538736919205708 1.31049141947996 6215 1.29394521859474 5 5 0 -6.74232318070206 LTS-001 NA NA NA NA LTS-001 chr6 168363346 168363442 97 * AFDN NA 0 NA 1.923 1 NA NA NA NA NA LTS-001 chr6 168363443 170592293 2228851 * c(HGC6.3, LOC154449, DACT2, WDR27, DLL1, KIF25, C6orf120, LINC00242, AFDN, PHF10, ERMARD, SMOC2, TCTE3, THBS2, FRMD1, LINC00574) 0.140661938058059 45 0.049353804106654 1.46638554819876 1131 0.383726030861292 6 6 0 -6.74598984116787 LTS-001 chr6 170592294 170893599 301306 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 1.52936056783481 369 0.339955697874041 6 NA NA -5.76458533153738 LTS-001 chr7 193047 228659 35613 * FAM20C 0.478 1 NA 1.07746955940415 52 0.310384456658421 4 4 0 -5.76526880372823 LTS-001 chr7 228660 5346757 5118098 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ZNF890P, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, NA NA NA NA NA NA NA NA NA LTS-001 TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.457966007270812 197 0.0594413754544973 1.18376672320954 4701 0.315467217773755 4 2 2 -6.85815518716289 LTS-001 NA NA NA NA LTS-001 chr7 5346758 5346969 212 * TNRC18 NA 0 NA 0.883 1 NA NA NA NA NA LTS-001 chr7 5346970 5952632 605663 * c(RNF216-IT1, ZNF815P, CCZ1, RNF216, ACTB, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.443504628991596 30 0.0607417370569006 1.0769672841217 749 0.320349490270919 4 2 2 -6.76078888121398 LTS-001 chr7 5952633 5958446 5814 * CCZ1 NA 0 NA 1.444 1 NA NA NA NA NA LTS-001 chr7 5958447 6006781 48335 * c(RSPH10B, CCZ1) 0.25247346847634 3 0.0737043644117045 1.64567485146284 74 0.703036296930624 6 5 1 -6.73652757693734 LTS-001 chr7 6006782 6012853 6072 * RSPH10B NA 0 NA 0.479 1 NA NA NA NA NA LTS-001 chr7 6012854 6803726 790873 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.459575169894267 30 0.0910400253014934 1.07725166596675 1313 0.281376610929748 4 2 2 -6.80234455268719 LTS-001 chr7 6803727 6805326 1600 * RSPH10B2 NA 0 NA 0.369 1 NA NA NA NA NA LTS-001 chr7 6805327 6844723 39397 * c(CCZ1B, RSPH10B2) NA 0 NA 0.397147594477157 57 0.406715070407086 0 NA NA -5.76464045202289 LTS-001 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 0.769 1 NA NA NA NA NA LTS-001 chr7 6845571 12730362 5884792 * c(LOC100131257, ARL4A, GLCCI1, PER4, VWDE, CCZ1B, THSD7A, NXPH1, ICA1, COL28A1, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, SCIN, PHF14) 0.437677233986995 54 0.0785168175356015 1.10612116587959 1693 0.348928042955692 4 2 2 -6.77148142686282 LTS-001 chr7 12730363 13978809 1248447 * c(ARL4A, ETV1) 0.443 1 NA 1.12969395595028 146 0.258618725185422 4 4 0 -5.7668936133166 LTS-001 chr7 13978810 14215576 236767 * c(DGKB, ETV1) 0.288189336227198 9 0.202951827891361 1.28064197276343 126 0.484977993740642 5 4 1 -6.73426169280602 LTS-001 chr7 14215577 14215781 205 * DGKB 0.47 1 NA 1.14714640483399 6 0.261572934379687 4 4 0 -5.76441013499221 LTS-001 chr7 14215782 20450370 6234589 * c(MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, AGR2, AGR3, DGKB, AHR, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, MACC1, ITGB8, AGMO, MEOX2, ANKMY2, TWIST1, ISPD, HDAC9) 0.447828942700252 40 0.0356277045756997 1.11734188756017 1896 0.26426256297452 4 2 2 -6.85454143201311 LTS-001 chr7 20450371 20450411 41 * ITGB8 NA 0 NA 1.478 1 NA NA NA NA NA LTS-001 chr7 20450412 20663070 212659 * c(ABCB5, ITGB8) 0.471 1 NA 1.23170342117163 7 0.36640401848493 4 4 0 -5.76927270096332 LTS-001 chr7 20663071 20666235 3165 * ABCB5 0.364 1 NA 1.31312383493545 5 0.379671173517295 5 5 0 -5.7644122704475 LTS-001 chr7 20666236 30880542 10214307 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, DFNA5, EVX1, SP8, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, RPL23P8, ZNRF2, STEAP1B, RPS2P32, OSBPL3, GARS, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, NA NA NA NA NA NA NA NA NA LTS-001 HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ABCB5, FAM221A, IL6, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, CDCA7L, KLHL7, STK31, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, GGCT, FAM188B, FAM126A, PLEKHA8, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.37474039240033 161 0.0797518107623631 1.43604326715666 6112 0.543944723871596 6 4 2 -6.78979496681367 LTS-001 NA NA NA NA LTS-001 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.609 1 NA NA NA NA NA LTS-001 chr7 30882039 31823435 941397 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.354120562961508 24 0.120539540388627 1.7053443487613 738 0.638678893331927 7 5 2 -6.74436131052611 LTS-001 chr7 31823436 31823534 99 * PDE1C NA 0 NA 1.588 1 NA NA NA NA NA LTS-001 chr7 31823535 45956990 14133456 * c(DPY19L1P1, LOC100130673, MIR1200, MIR3943, MIR550B2, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, AOAH-IT1, RAMP3, YKT6, ADCY1, POU6F2, FKBP9, MPLKIP, AEBP1, BMPER, TMED4, HECW1, AVL9, NACAD, DPY19L1, KIAA0895, NUDCD3, LSM5, LINC00957, KBTBD2, GCK, VPS41, BBS9, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, AOAH, FAM183BP, IGFBP1, IGFBP3, LINC00265, GPR141, INHBA, NPSR1, LINC00997, NA NA NA NA NA NA NA NA NA LTS-001 LOC401324, RASA4CP, NPSR1-AS1, ZNRF2P1, RP9P, TARP, OGDH, NT5C3A, NME8, PDE1C, UBE2D4, PGAM2, POLD2, ANLN, DDX56, EPDR1, PPIA, DPY19L2P1, URGCP, COA1, PSMA2, YAE1D1, TBX20, PURB, MYL7, RALA, RP9, MYO1G, SEPT7P2, HERPUD2, SFRP4, BLVRA, LOC646999, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, MIR550A2, C7orf25, SUGCT, EEPD1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, CDK13, TBRG4, STK17A, H2AFV, ELMO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SEPT7) 0.379970723486584 212 0.0620937610433729 1.45111208092077 7782 0.565613896615454 6 4 2 -6.78067120279109 LTS-001 NA NA NA NA LTS-001 chr7 45956991 45957055 65 * IGFBP3 0.356 1 NA 0.834 1 NA NA NA NA NA LTS-001 chr7 45957056 48146484 2189429 * c(C7orf57, PKD1L1, SUN3, HUS1, IGFBP3, C7orf65, TNS3, UPP1, C7orf69, LINC00525) 0.397758297866839 7 0.235473080050717 1.14045915861901 987 0.252832043442858 4 2 2 -6.74801220143932 LTS-001 chr7 48146485 48285485 139001 * c(ABCA13, UPP1) 0.454 1 NA 1.06284963093785 79 0.233670477901635 4 4 0 -5.77319351932282 LTS-001 chr7 48285486 57532512 9247027 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, EGFR-AS1, IKZF1, ZPBP, ABCA13, DDC, CDC14C, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, ZNF713, FKBP9P1, VWC2, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, FIGNL1, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.44102701749238 63 0.0776685323773984 1.12696874356584 2900 0.262686793064008 4 2 2 -6.76157889475181 LTS-001 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.42408322445383 15 0.391229904397961 6 NA NA -5.76442053245032 LTS-001 chr7 62758725 63033612 274888 * ZNF733P 0.456 1 NA 0.821057966519887 20 0.427996200179886 2 2 0 -5.76677500918916 LTS-001 chr7 63033613 64643785 1610173 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.447872324999866 20 0.108287191253046 1.02934325833818 600 0.266584945915897 4 2 2 -6.89679068208154 LTS-001 chr7 64643786 64643856 71 * character(0) NA 0 NA 0.661 1 NA NA NA NA NA LTS-001 chr7 64643857 65150760 506904 * c(ZNF92, LOC441242, INTS4P2) 0.463119410794649 5 0.0480437300800011 0.648412127647136 88 0.193239104788976 2 1 1 -7.20813666565631 LTS-001 chr7 65150761 74131431 8980671 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, NA NA NA NA NA NA NA NA NA LTS-001 MIR590, GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.41882051159749 53 0.136619289226226 1.11373555045665 3590 0.379590824962655 4 2 2 -6.77222774087235 LTS-001 NA NA NA NA LTS-001 chr7 74131432 74133186 1755 * GTF2I NA 0 NA 0.715 1 NA NA NA NA NA LTS-001 chr7 74133187 75081162 947976 * c(POM121C, NSUN5P1, GTF2I, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.348 1 NA 0.85031701147193 281 0.309070158232254 2 2 0 -5.80840668398271 LTS-001 chr7 75081163 75115203 34041 * POM121C NA 0 NA 1.811 1 NA NA NA NA NA LTS-001 chr7 75115204 75933661 818458 * c(POM121C, MIR4651, CCL26, SRRM3, HIP1, HSPB1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A, TMEM120A) 0.464547491671825 15 0.0256444554482659 1.08415176990841 770 0.262393898301145 4 2 2 -7.49364627665591 LTS-001 chr7 75933662 75956098 22437 * character(0) NA 0 NA 1.554 1 NA NA NA NA NA LTS-001 chr7 75956099 75959628 3530 * YWHAG 0.381687124039093 2 0.0282842712474619 1.53592256584035 77 0.317909503087137 11 7 4 -6.7425661700055 LTS-001 chr7 75959629 75988025 28397 * YWHAG NA 0 NA 1.201 1 NA NA NA NA NA LTS-001 chr7 75988026 77762353 1774328 * c(PMS2P9, LOC100133091, APTR, FGL2, DTX2, SSC4D, RSBN1L, POMZP3, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, UPK3B, TMEM60, MAGI2) 0.419581585227564 29 0.0993501669098982 1.04434230975693 1172 0.245855225355037 3 2 1 -6.86900199322775 LTS-001 chr7 77762354 77764349 1996 * MAGI2 NA 0 NA 1.257 1 NA NA NA NA NA LTS-001 chr7 77764350 86848912 9084563 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, TMEM243, CD36, SEMA3E, MAGI2, DMTF1) 0.445241824835298 36 0.0802705346323215 1.15555440470588 2363 0.264213090567702 4 2 2 -6.74891740205257 LTS-001 chr7 86848913 86848962 50 * TMEM243 NA 0 NA 1.553 1 NA NA NA NA NA LTS-001 chr7 86848963 87280153 431191 * c(TP53TG1, RUNDC3B, ABCB1, ABCB4, CROT, TMEM243) 0.31077624039646 4 0.0563641434483543 1.40806976857029 426 0.337793714841243 5 4 1 -6.79800424729316 LTS-001 chr7 87280154 97823120 10542967 * c(LOC100506136, MIR4652, LOC101409256, AKAP9, SLC25A13, CDK6, BET1, DBF4, COL1A2, RUNDC3B, CYP51A1, DLX5, DLX6, DYNC1I1, SAMD9L, C7orf62, ZNF804B, LMTK2, PEG10, HEPACAM2, FAM133B, STEAP2, STEAP1, GNG11, GNGT1, DLX6-AS1, MGC72080, LRRD1, C7orf76, ASNS, DPY19L2P4, OCM2, PDK4, ASB4, PEX1, CDK14, ABCB1, ADAM22, PON1, PON2, PON3, ANKIB1, SAMD9, PPP1R9A, VPS50, SLC25A40, SDHAF3, MIR489, GATAD1, CASD1, SRI, NA NA NA NA NA NA NA NA NA LTS-001 TAC1, MIR591, MIR653, STEAP4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, GTPBP10, KRIT1, SGCE, CLDN12) 0.464942562249645 76 0.0325790805767761 1.0780004831586 6109 0.247750407450356 4 2 2 -7.59210482576595 LTS-001 NA NA NA NA LTS-001 chr7 97823121 97852490 29370 * c(BHLHA15, LMTK2, TECPR1) 0 1 NA 1.38977784732081 204 0.319760662323728 5 5 0 -5.76474377203216 LTS-001 chr7 97852491 97852938 448 * TECPR1 NA 0 NA 1.099 1 NA NA NA NA NA LTS-001 chr7 97852939 100321138 2468200 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, TMEM130, NYAP1, ZKSCAN5, CNPY4, MBLAC1, BRI3, TECPR1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, NPTX2, PCOLCE, ACTL6B, NA NA NA NA NA NA NA NA NA LTS-001 PMS2P1, ZCWPW1, C7orf43, BAIAP2L1, MEPCE, AZGP1, SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.434571658565637 69 0.0501969522515587 1.12073808291742 4977 0.235242211696002 4 2 2 -6.74699763170273 LTS-001 NA NA NA NA LTS-001 chr7 100321139 100321191 53 * EPO NA 0 NA 1.131 1 NA NA NA NA NA LTS-001 chr7 100321192 100344360 23169 * c(EPO, ZAN) 0.481 1 NA 0.69116216634697 38 0.583695964233841 2 2 0 -5.76500703625812 LTS-001 chr7 100344361 100345155 795 * ZAN NA 0 NA 1.291 1 NA NA NA NA NA LTS-001 chr7 100345156 100488658 143503 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.460882929838071 34 0.0836439753763282 1.18624579190812 657 2.11068942414094 4 2 2 -6.7932408578764 LTS-001 chr7 100488659 100547333 58675 * ACHE 0 1 NA 1.24111520585968 55 0.370395622506148 5 5 0 -5.76563630990905 LTS-001 chr7 100547334 100549599 2266 * character(0) NA 0 NA 1.28701347399956 9 0.899969027244827 5 NA NA -5.76441194192657 LTS-001 chr7 100549600 100549650 51 * character(0) NA 0 NA 3.39 1 NA NA NA NA NA LTS-001 chr7 100549651 100550473 823 * character(0) 0.246905200117209 25 0.0883380438995567 2.24959535056593 41 0.992713811214294 19 15 4 -6.73561512752286 LTS-001 chr7 100550474 100550484 11 * character(0) NA 0 NA 1.231 1 NA NA NA NA NA LTS-001 chr7 100550485 100551183 699 * character(0) 0.242754159242327 11 0.124288228068324 0.688585449568631 39 0.507194511607321 15 12 3 -6.73728932802258 LTS-001 chr7 100551184 100551220 37 * character(0) 0.228 1 NA 1.965 1 NA NA NA NA NA LTS-001 chr7 100551221 100553077 1857 * character(0) 0.252963249866279 47 0.0594140444436396 2.02164727272928 87 1.07397246553289 14 11 3 -6.73334284542176 LTS-001 chr7 100553078 100555653 2576 * character(0) NA 0 NA 1.16562579365433 9 0.252625436389749 4 NA NA -5.76441665941472 LTS-001 chr7 100555654 100606148 50495 * character(0) NA 0 NA 0.663 1 NA NA NA NA NA LTS-001 chr7 100606149 100607797 1649 * character(0) 0.322 1 NA 0.730383505204578 11 0.380813172995989 2 2 0 -5.76443962372619 LTS-001 chr7 100607798 100609934 2137 * character(0) 0.373395355523193 7 0.0397593954155433 0.795150346908449 28 0.250625215565491 6 4 2 -6.74636409403319 LTS-001 chr7 100609935 100609970 36 * character(0) NA 0 NA 0.973 1 NA NA NA NA NA LTS-001 chr7 100609971 100612969 2999 * MUC12 0.294214191990399 13 0.0648896499194337 1.18934195432885 37 0.349276637738154 5 4 1 -6.73335222149413 LTS-001 chr7 100612970 100624718 11749 * MUC12 0.475 1 NA 0.922563310556517 15 0.267173886662386 3 3 0 -5.764594833287 LTS-001 chr7 100624719 102089875 1465157 * c(LOC100289561, MIR4285, MIR4653, LOC100630923, MUC12, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.444642433899794 45 0.0800762578465494 1.16183455147311 1792 0.257987119170435 4 2 2 -6.74539077336258 LTS-001 chr7 102089876 102093170 3295 * ORAI2 0 1 NA 1.06678920896489 43 0.262021838928179 4 4 0 -5.76456014276401 LTS-001 chr7 102093171 102976706 883536 * c(RPL19P12, RASA4B, SPDYE2B, MIR4467, MIR5090, RASA4, LRRC17, LRWD1, FAM185A, FBXL13, NAPEPLD, POLR2J2, DNAJC2, DPY19L2P2, POLR2J, ALKBH4, POLR2J3, ORAI2, ARMC10, PMPCB) 0.368583410010766 25 0.169465611064113 1.10569481351605 835 0.544551387747185 4 3 1 -6.7527295822219 LTS-001 chr7 102976707 102985211 8505 * DNAJC2 0.472 1 NA 1.07176163406467 39 0.226192932946588 4 4 0 -5.7648649883005 LTS-001 chr7 102985212 126078884 23093673 * c(EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, AASS, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, RNF133, THAP5, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, TFEC, LAMB4, HYAL4, TSPAN12, POT1, HYALP1, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, GPR37, GRM8, MDFIC, ST7-OT4, IFRD1, KCND2, SLC26A5, LHFPL3, RNF148, FEZF1, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NA NA NA NA NA NA NA NA NA LTS-001 LMOD2, NDUFA5, NRCAM, ORC5, PNPLA8, TAS2R16, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, PUS7, ING3, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, PTPRZ1, RINT1, TMEM168, LHFPL3-AS1, SLC13A1, SPAM1, SRPK2, SYPL1, LHFPL3-AS2, TMEM229A, WNT2, ST7, CBLL1, CPED1, CAPZA2, IMMP2L, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, DOCK4) 0.454350250758276 108 0.0569431491887237 1.1210063176128 9364 0.307240702752077 4 2 2 -6.88096400846551 LTS-001 NA NA NA NA LTS-001 chr7 126078885 134655367 8576483 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, MGC27345, ZNF800, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NRF1, PAX4, CPA4, ZC3HC1, PODXL, NA NA NA NA NA NA NA NA NA LTS-001 CHCHD3, RBM28, METTL2B, AKR1B10, STRIP2, EXOC4, OPN1SW, LRRC4, NA, CCDC136, SMO, BPGM, MIR592, MIR593, UBE2H, GCC1, CALD1, CALU, FAM71F1, SLC35B4, TMEM209, PLXNA4, ATP6V1F, CPA5, CEP41) 0.450723726926499 121 0.0364227719916981 1.24504544559901 5772 0.303162265315893 4 2 2 -7.21058672418625 LTS-001 NA NA NA NA LTS-001 chr7 134655368 134672559 17192 * c(AGBL3, CALD1) NA 0 NA 0.947 1 NA NA NA NA NA LTS-001 chr7 134672560 141464153 6791594 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, LUC7L2, MRPS33, TMEM140, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, NA NA NA NA NA NA NA NA NA LTS-001 C7orf49, TTC26, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.447750684603169 122 0.0969725915489489 1.09700139642659 5208 0.266991916943715 4 2 2 -6.85457001302115 LTS-001 NA NA NA NA LTS-001 chr7 141464154 141464158 5 * TAS2R3 NA 0 NA 1.218 1 NA NA NA NA NA LTS-001 chr7 141464159 141957504 493346 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, MGAM, MGAM2) 0.453338803696685 30 0.0288428361192567 1.15520841824604 921 0.2463196649245 4 2 2 -6.98503803785709 LTS-001 chr7 141957505 142099537 142033 * c(PRSS58, NA) 0.122 1 NA 0.912491311483082 87 0.261258528495386 3 3 0 -5.76807916474709 LTS-001 chr7 142099538 142231762 132225 * character(0) 0.222366134335324 23 0.0828025891787422 1.27499763256848 159 0.504698220569512 3 3 0 -6.76265221701136 LTS-001 chr7 142231763 142239679 7917 * character(0) 0.465 1 NA 1.22716012822307 9 0.255990125677621 4 4 0 -5.76474389510766 LTS-001 chr7 142239680 142499836 260157 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.292303847938187 35 0.135859461493526 1.58635860650834 243 4.20370150297606 5 4 1 -6.7333320602662 LTS-001 chr7 142499837 142567944 68108 * EPHB6 0.45 1 NA 1.13035303230364 113 0.19510395418678 4 4 0 -5.76462999016415 LTS-001 chr7 142567945 143305591 737647 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.466967511416045 12 0.0241259322319492 1.12666599041404 1204 0.234428444271901 4 2 2 -7.67478506580162 LTS-001 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.168154422779839 39 0.292223182968032 0 NA NA -5.85177356951843 LTS-001 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.329 1 NA NA NA NA NA LTS-001 chr7 143400289 143556264 155976 * c(LOC154761, TCAF2, CTAGE6, TCAF1) 0.255 1 NA 1.48014253298545 88 0.546259961614918 6 6 0 -5.76456369870287 LTS-001 chr7 143556265 143573043 16779 * TCAF1 NA 0 NA 0.879 1 NA NA NA NA NA LTS-001 chr7 143573044 151167527 7594484 * c(WDR86-AS1, ZNF783, MIR548I4, MIR548F4, MIR3907, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, OR2A14, OR6B1, OR2F2, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, GIMAP7, ZNF467, GIMAP1, C7orf33, EZH2, SSPO, AOC1, CNTNAP2, GIMAP2, OR2F1, GBX1, TPK1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, OR2A12, WDR86, KCNH2, OR2A25, OR2A5, OR2A7, NA NA NA NA NA NA NA NA NA LTS-001 ATP6V0E2-AS1, OR2A2, ARHGEF35, GIMAP6, NOS3, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ZNF398, RARRES2, RHEB, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, ARHGEF34P, LOC728743, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, TCAF1) 0.448915837103338 143 0.0656383754830839 1.11882717265757 5756 0.646945878277715 4 2 2 -6.76936497598728 LTS-001 NA NA NA NA LTS-001 chr7 151167528 151167604 77 * RHEB 0.479 1 NA 0.778 1 NA NA NA NA NA LTS-001 chr7 151167605 151945007 777403 * c(PRKAG2-AS1, GALNTL5, PRKAG2, KMT2C, RHEB, GALNT11) 0.442054952136902 10 0.0310154083570659 1.04240117738256 742 0.287022065979768 4 2 2 -6.82171802833453 LTS-001 chr7 151945008 151945140 133 * KMT2C 0.385 1 NA 1.16492235892047 5 0.174977712866525 4 4 0 -5.76441078151111 LTS-001 chr7 151945141 152520490 575350 * c(LINC01003, FABP5P3, ACTR3B, KMT2C, XRCC2) 0.272873465594239 9 0.0842413859757252 0.996067956823362 213 0.273839136876213 2 2 0 -7.00149947214575 LTS-001 chr7 152520491 153749753 1229263 * c(DPP6, ACTR3B) 0.412 1 NA 1.0494485849059 149 0.224416212235584 3 3 0 -5.86988111297042 LTS-001 chr7 153749754 158738878 4989125 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, UBE3C) 0.414316889606265 133 0.0568358159921558 1.01451105781961 2950 0.261858606482606 3 2 1 -6.88577842059822 LTS-001 chr7 158738879 159025951 287073 * c(LINC00689, WDR60, VIPR2) NA 0 NA 1.01547889068147 142 0.171794528736761 3 NA NA -5.78058162292636 LTS-001 chr8 182757 195254 12498 * ZNF596 0.35 1 NA 0.772401557955945 31 0.190413997181354 2 2 0 -5.764430115213 LTS-001 chr8 195255 2954617 2759363 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.274170193767457 76 0.0759014088120183 0.810680702938825 1531 0.243666246656294 2 2 0 -6.78286875667874 LTS-001 chr8 2954618 2964006 9389 * CSMD1 NA 0 NA 0.376 1 NA NA NA NA NA LTS-001 chr8 2964007 3201023 237017 * CSMD1 0.378393267768385 3 0.0178978583448784 0.451891389728159 142 0.106448794824031 1 1 0 -9.09366492356125 LTS-001 chr8 3201024 3205467 4444 * CSMD1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-001 chr8 3205468 20061469 16856002 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LINC00681, DLC1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, C8orf74, FDFT1, FGL1, PSD3, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, NA NA NA NA NA NA NA NA NA LTS-001 FGF20, ANGPT2, FAM86B3P, XKR6, MICU3, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, AGPAT5, CSGALNACT1, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, CSMD1, USP17L4, USP17L3, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MTMR9, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, NAT1, ERI1, MTMR7, LONRF1, MFHAS1, RP1L1) 0.26840821906222 251 0.071631549059874 0.817335397329244 6448 1.28298736331609 2 2 0 -6.747748946994 LTS-001 NA NA NA NA LTS-001 chr8 20061470 20068088 6619 * ATP6V1B2 NA 0 NA 0.812887717776032 18 0.223549968095042 2 NA NA -5.76454539107166 LTS-001 chr8 20068089 20069789 1701 * ATP6V1B2 0.337 1 NA 0.636593698757164 15 0.209532427311951 1 1 0 -5.76450731809419 LTS-001 chr8 20069790 28904958 8835169 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, LOC100507156, LZTS1-AS1, SORBS3, NPM2, PNMA2, ADAM28, LZTS1, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, EGR3, R3HCC1, LGI3, DMTN, EPHX2, EXTL3, PTK2B, XPO7, TRIM35, RHOBTB2, SLC39A14, LOC254896, GFRA2, ADAMDEC1, GNRH1, LOC286059, LOC286114, SCARA5, LOC389641, NUGGC, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, ATP6V1B2, PNOC, C8orf58, NA NA NA NA NA NA NA NA NA LTS-001 KCTD9, PIWIL2, ELP3, PPP2R2A, CCDC25, PPP3CC, INTS9, HR, PBK, ZNF395, BIN3, CCAR2, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, POLR3D, BNIP3L, STC1, HMBOX1, FZD3, NUDT18, DOCK5, BIN3-IT1, REEP4, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, PHYHIP) 0.335224494333052 200 0.0768294095111315 0.614654193787248 7849 0.172144487901383 1 1 0 -6.89738827993263 LTS-001 NA NA NA NA LTS-001 chr8 28904959 29207917 302959 * c(DUSP4, KIF13B, HMBOX1) 0.313542402770783 6 0.0527358195789794 0.768930825806494 487 0.214440231844497 1 1 0 -7.19453843866397 LTS-001 chr8 29207918 29207999 82 * DUSP4 NA 0 NA 0.619 1 NA NA NA NA NA LTS-001 chr8 29208000 30689189 1481190 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, DCTN6, RBPMS, DUSP4, LEPROTL1, FAM183CP, GSR, GTF2E2, SARAF, PPP2CB, TEX15, LINC00589, MBOAT4, UBXN8) 0.322582061085441 4 0.0411258231933822 0.563589258239322 644 0.123388675994743 1 1 0 -7.10442880556135 LTS-001 chr8 30689190 39311650 8622461 * c(NRG1-IT3, ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, PURG, NRG1, C8orf86, WHSC1L1, BRF2, TEX15, PLEKHA2, STAR, TACC1, LOC728024, WRN, DUSP26, RNF122, ZNF703, TTI2, RAB11FIP1, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ASH2L, BAG4) 0.32585262253096 66 0.0926356071440983 0.619581503711228 4156 0.152982883464904 1 1 0 -7.05808856115094 LTS-001 chr8 39311651 39349526 37876 * ADAM3A NA 0 NA 1.71921850786175 55 0.476583321102262 7 NA NA -5.76442773322277 LTS-001 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.02 1 NA NA NA NA NA LTS-001 chr8 39442068 43046564 3604497 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.387552336631995 25 0.0916338183569072 0.97739762836805 2774 0.248072081122202 3 2 1 -6.751384397887 LTS-001 chr8 43046565 43212050 165486 * c(HGSNAT, POTEA) NA 0 NA 1.07715961418664 153 0.249127885954928 4 NA NA -5.77065553141362 LTS-001 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.463 1 NA 1.01674306888794 47 0.171596715972276 3 3 0 -5.78511507239519 LTS-001 chr8 48102988 68430343 20327356 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LOC100287846, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, CEBPD, ARFGEF1, COPS5, XKR4, PCMTD1, TMEM68, ADHFE1, UBXN2B, PXDNL, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SPIDR, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, FAM150A, LOC401463, LYN, NA NA NA NA NA NA NA NA NA LTS-001 MIR124-2, MCM4, MOS, ASPH, MYBL1, C8orf22, OPRK1, PDE7A, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, ARMC1, LINC00251, CHD7, PRKDC, C8orf44, CPA6, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, SNAI2, TCEA1, TTPA, UBE2V2, CA8, CHCHD7, EFCAB1, CSPP1, VCPIP1, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, ST18, TOX, RB1CC1) 0.379437812665071 113 0.0885895154292817 0.946853094454863 7680 0.251511169549199 3 2 1 -6.82196801665894 LTS-001 NA NA NA NA LTS-001 chr8 68430344 69149220 718877 * c(CPA6, PREX2) 0.419910215860078 10 0.0491800546744082 1.20650375409686 376 0.269643471307233 5 3 2 -6.78897076705382 LTS-001 chr8 69149221 96087927 26938707 * c(C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, MIR3150B, LINC01592, MIR378D2, MIR4661, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, NCOA2, WWP1, STMN2, SLC26A7, C8orf34, FAM92A1, NDUFAF6, DCAF4L2, RALYL, RDH10, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, ATP6V0D2, REXO1L1P, RAD54B, NA NA NA NA NA NA NA NA NA LTS-001 KIAA1429, GEM, STAU2, TRIQK, DPY19L4, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, C8orf87, RBM12B, LOC392232, C8orf59, MMP16, MIR2052HG, FLJ46284, NBN, PI15, ZC2HC1A, LACTB2, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, UBE2W, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, PRDM14, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, TCEB1, TERF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, ZFHX4, SLCO5A1, CRISPLD1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MSC, CHMP4C, KCNB2, TP53INP1) 0.403302503047771 208 0.0654022229117527 0.959801803768307 9847 0.312534316176381 3 2 1 -6.7368311065685 LTS-001 NA NA NA NA LTS-001 chr8 96087928 96166218 78291 * c(NDUFAF6, PLEKHF2) NA 0 NA 0.798 1 NA NA NA NA NA LTS-001 chr8 96166219 96167316 1098 * PLEKHF2 0.397 1 NA 0.785610908297106 27 0.194042076971279 2 2 0 -5.7644110227629 LTS-001 chr8 96167317 96168740 1424 * PLEKHF2 0.235 1 NA 0.81340044601723 31 0.138519157481004 2 2 0 -5.76448821534909 LTS-001 chr8 96168741 99467856 3299116 * c(LOC100500773, C8orf37-AS1, RIDA, CPQ, POP1, C8orf37, ERICH5, SNORA72, KCNS2, GDF6, MATN2, MTERF3, LAPTM4B, RPL30, LINC01298, SDC2, STK3, UQCRB, PLEKHF2, NIPAL2, TSPYL5, MTDH, PTDSS1) 0.282254361884018 28 0.0963952127288334 0.794626003204203 1583 0.215123102642515 2 2 0 -6.76680621357105 LTS-001 chr8 99467857 99964348 496492 * c(OSR2, STK3) NA 0 NA 0.767964782341613 115 0.142646486592905 2 NA NA -5.76796626578018 LTS-001 chr8 99964349 100025905 61557 * VPS13B NA 0 NA 0.949 1 NA NA NA NA NA LTS-001 chr8 100025906 100844858 818953 * c(MIR875, VPS13B, MIR599) 0.397 1 NA 1.14707234467102 285 0.242173084418771 4 4 0 -5.7644112932493 LTS-001 chr8 100844859 104077040 3232182 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.394037713702086 36 0.107646540946645 1.03455197373658 1908 0.256106462316149 3 2 1 -6.88158768629323 LTS-001 chr8 104077041 104077125 85 * ATP6V1C1 NA 0 NA 1.054 1 NA NA NA NA NA LTS-001 chr8 104077126 120584581 16507456 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TRHR, TRPS1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.448028916193759 82 0.0605005468556142 1.1507698872841 4504 1.50997310367788 4 2 2 -6.76401419163987 LTS-001 chr8 120584582 120592308 7727 * ENPP2 NA 0 NA 1.091 1 NA NA NA NA NA LTS-001 chr8 120592309 136470520 15878212 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, LRRC6, MTBP, NSMCE2, LINC01591, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, MIR30B, MIR30D, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, ENPP2, POU5F1B, NA NA NA NA NA NA NA NA NA LTS-001 TRMT12, WDYHV1, GSDMC, ZFAT, PVT1, ZFAT-AS1, HAS2-AS1, DEPTOR, ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TAF2, TG, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.442234196970869 160 0.0643819158830125 1.09466992473854 6129 0.261248912272797 4 2 2 -7.02849407686673 LTS-001 NA NA NA NA LTS-001 chr8 136470521 139824057 3353537 * c(KHDRBS3, COL22A1, FAM135B) 0.439118905702717 20 0.051943162257059 1.2223885405376 584 0.288284741269262 4 2 2 -6.83574223843138 LTS-001 chr8 139824058 139838869 14812 * COL22A1 0 1 NA 1.28877630171867 15 0.717280266668741 5 5 0 -5.76442721961876 LTS-001 chr8 139838870 140946185 1107316 * c(COL22A1, KCNK9, TRAPPC9) 0.238525682866775 5 0.256645670136864 1.29655730413448 170 0.416736515338109 5 4 1 -6.76263855002498 LTS-001 chr8 140946186 140998947 52762 * TRAPPC9 NA 0 NA 0.897 1 NA NA NA NA NA LTS-001 chr8 140998948 141436815 437868 * TRAPPC9 NA 0 NA 0.778256370660386 79 0.216858516914428 2 NA NA -5.76443912259213 LTS-001 chr8 141436816 141445215 8400 * TRAPPC9 NA 0 NA 0.911 1 NA NA NA NA NA LTS-001 chr8 141445216 141541288 96073 * c(AGO2, CHRAC1, TRAPPC9) 0.430162707990208 4 0.0562553701140315 1.12177432466795 100 0.330408290275575 4 2 2 -6.73646069684986 LTS-001 chr8 141541289 141541881 593 * AGO2 0.456 1 NA 1.22733996870596 13 0.63504238703675 4 4 0 -5.76441420835351 LTS-001 chr8 141541882 142148284 606403 * c(DENND3, AGO2, PTK2) 0.442046604678769 12 0.058341471293817 1.02306388268041 418 0.195005234564265 4 2 2 -6.86562513297861 LTS-001 chr8 142148285 146068322 3920038 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, MAFA, NA NA NA NA NA NA NA NA NA LTS-001 LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, ADGRB1, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.450236998796946 161 0.0690121990521417 1.16841339952945 7105 0.260687339006277 4 2 2 -6.77724229554706 LTS-001 NA NA NA NA LTS-001 chr8 146068323 146280905 212583 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF7, ZNF16) NA 0 NA 1.08020224762027 505 0.202520009702051 4 NA NA -5.7754708755601 LTS-001 chr9 14732 14764 33 * WASH1 0.273 1 NA 0.822 1 NA NA NA NA NA LTS-001 chr9 14765 745289 730525 * c(WASH1, C9orf66, FOXD4, KANK1, CBWD1, FAM138C, DOCK8) 0.31483570965009 36 0.0765043831092091 0.639156323633097 570 0.178912739545624 1 1 0 -6.89419084833568 LTS-001 chr9 745290 841706 96417 * c(DMRT1, KANK1) NA 0 NA 0.728819266534714 21 0.0732317586583204 2 NA NA -5.81374672070657 LTS-001 chr9 841707 841711 5 * DMRT1 NA 0 NA 0.915 1 NA NA NA NA NA LTS-001 chr9 841712 967981 126270 * DMRT1 0.49 1 NA 0.983944832333402 31 0.266389657198559 3 3 0 -5.76488833815276 LTS-001 chr9 967982 8524854 7556873 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.417780855219483 79 0.0455209664894439 0.990591418088921 3577 0.236811304825388 3 2 1 -6.88584489138666 LTS-001 chr9 8524855 8733987 209133 * PTPRD NA 0 NA 1.03675590986579 45 0.132694556989145 3 NA NA -5.80260849714399 LTS-001 chr9 12693908 13106255 412348 * c(LURAP1L, TYRP1, MPDZ) 0.36 1 NA 0.708643464250887 115 0.151621362878585 2 2 0 -5.86195131082155 LTS-001 chr9 13106256 14314157 1207902 * c(LINC00583, LINC01235, NFIB, MPDZ) 0.322670310204663 5 0.0661725018417772 0.711494355286977 498 0.192572913196861 2 2 0 -7.31788327296273 LTS-001 chr9 14314158 14314312 155 * NFIB NA 0 NA 0.585 1 NA NA NA NA NA LTS-001 chr9 14314313 22447460 8133148 * c(CDKN2B-AS1, C9orf92, MIR3152, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, CCDC171, SLC24A2, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MIR31, MLLT3, MTAP, NFIB, CDKN2A-AS1, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, MIR491, RPS6, DMRTA1, NA NA NA NA NA NA NA NA NA LTS-001 SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.29154374592373 73 0.0801110245578457 0.650305336981553 3764 0.168180332210711 1 1 0 -8.06009122066191 LTS-001 NA NA NA NA LTS-001 chr9 22447461 22447466 6 * DMRTA1 NA 0 NA 0.745 1 NA NA NA NA NA LTS-001 chr9 22447467 25678640 3231174 * c(IZUMO3, ELAVL2, TUSC1, LINC01239, DMRTA1) 0.283159730146437 11 0.0338451017001118 0.823151947011908 233 0.265580329375485 2 2 0 -6.97911802968004 LTS-001 chr9 25678641 26101441 422801 * c(LOC100506422, TUSC1) NA 0 NA 0.867207121738682 7 0.105812277620502 3 NA NA -6.00491210316118 LTS-001 chr9 26101442 26109905 8464 * LOC100506422 NA 0 NA 1.156 1 NA NA NA NA NA LTS-001 chr9 26109906 26841796 731891 * c(LOC100506422, CAAP1) 0.4 1 NA 1.04793090001983 43 0.2374959742038 3 3 0 -5.81906351235924 LTS-001 chr9 26841797 33675629 6833833 * c(MIR876, MIR873, TOPORS-AS1, TOPORS, PTENP1, TAF1L, LINC00032, LINGO2, C9orf72, DDX58, B4GALT1, SPINK4, ANXA2P2, DNAJA1, AQP3, AQP7, LINC01242, TMEM215, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, CHMP5, EQTN, APTX, SMU1, IFNK, BAG1, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.45395497853693 70 0.0707438809182151 1.1265133938532 2687 0.266200792384253 4 2 2 -6.79728969454766 LTS-001 chr9 33675630 33794894 119265 * c(PTENP1, PRSS3) 0.286 1 NA 1.17118560262565 27 0.284043218291777 4 4 0 -5.76480781261362 LTS-001 chr9 33794895 33799218 4324 * PRSS3 0.272894859886779 9 0.0428761135261944 1.50429855318522 31 0.557173413672284 13 10 3 -6.73797596217004 LTS-001 chr9 33799219 33817617 18399 * c(UBE2R2, PRSS3) 0.454 1 NA 1.11483126564185 7 0.35411613645136 4 4 0 -5.76447983119197 LTS-001 chr9 33817618 39178214 5360597 * c(SNORD121A, GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, SNORD121B, SIGMAR1, CREB3, UNC13B, CCL27, DCTN3, CLTA, CNTFR, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, FBXO10, DNAI1, SIT1, STOML2, NUDT2, KIF24, IGFBPL1, IL11RA, ENHO, FAM205BP, FAM221B, OR13J1, TOMM5, NA NA NA NA NA NA NA NA NA LTS-001 CNTFR-AS1, NPR2, PAX5, EXOSC3, UBAP1, TMEM8B, UBE2R2, UBAP2, OR2S2, KIAA1161, GBA2, RMRP, CCL19, CCL21, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.450705259373924 128 0.0611084008224948 1.13564971272649 6548 0.278588710107196 4 2 2 -6.78003151613915 LTS-001 NA NA NA NA LTS-001 chr9 40498471 40499498 1028 * c(ZNF658B, NA) 0.231 1 NA 0.787275682064805 17 0.259582413525579 2 2 0 -5.76441091617801 LTS-001 chr9 40499499 44175697 3676199 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.61875322550218 63 0.29933503962921 1 NA NA -5.79658886832154 LTS-001 chr9 65602571 66457106 854536 * LOC286297 0.266 1 NA 1.13538251581878 3 0.208624862692186 4 4 0 -5.76555782842292 LTS-001 chr9 66457107 68427877 1970771 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.35612728074505 24 0.0795458121580518 0.958122220406475 54 0.356046676503316 3 2 1 -6.91019840930669 LTS-001 chr9 68427878 68433537 5660 * FRG1JP 0.243 1 NA 0.805289519226567 5 0.121965158959434 2 2 0 -5.76464193317776 LTS-001 chr9 68433538 106900480 38466943 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, GADD45G, SPIN1, SEC61B, SLC35D2, FAM122A, CKS2, GRIN3A, TMC1, NA NA NA NA NA NA NA NA NA LTS-001 COL15A1, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, ALDOB, HABP4, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 GCNT1, OSTF1, INVS, GNAQ, C9orf47, SPATA31E1, LOC286238, LOC286359, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, NANS, MRPL50, NUTM2F, DIRAS2, ASPN, TEX10, PLPPR1, AUH, NMRK1, STX17, NOL8, C9orf40, RFK, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, PGM5P2, NAA35, RORB, SLC28A3, FRG1JP, CBWD6, SPATA31C2, IPPK, WNK2, RPSAP9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 FOXD4L6, FOXD4L5, SYK, KLF9, TGFBR1, TLE1, TLE4, TMOD1, ANKRD20A4, CORO2A, XPA, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.252790284344657 355 0.0686149607823298 0.789952282920159 18279 0.375891634469753 2 2 0 -6.77801648927839 LTS-001 NA NA NA NA LTS-001 chr9 106900481 106901418 938 * SMC2 NA 0 NA 1.002 1 NA NA NA NA NA LTS-001 chr9 106901419 107457725 556307 * c(SMC2, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.238758657460348 29 0.0471131381172092 0.99618228315125 255 0.515699790082189 3 3 0 -6.88800235224847 LTS-001 chr9 107457726 107457740 15 * OR13D1 NA 0 NA 0.82 1 NA NA NA NA NA LTS-001 chr9 107457741 113801055 6343315 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, ABCA1, LPAR1, FKTN, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR13D1, NA, C9orf152, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, FAM206A, TMEM38B, NIPSNAP3B, PTPN3, ZNF462, RAD23B, TAL2, TXN, SVEP1, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.258200402786883 75 0.0767749560330312 0.827913214816862 3852 1.30462869109586 2 2 0 -6.74568865219084 LTS-001 chr9 113801056 114089695 288640 * LPAR1 NA 0 NA 0.686 1 NA NA NA NA NA LTS-001 chr9 114089696 115234451 1144756 * c(MIR3134, MIR4668, ZNF483, C9orf84, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.208976413007461 5 0.175936636321148 0.747461774959001 1223 0.183520193179949 2 2 0 -6.83017729765414 LTS-001 chr9 115234452 117074810 1840359 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4) 0.264777606722905 64 0.0567069884554147 0.810703183200241 2562 0.351541869476531 2 2 0 -6.74630245470116 LTS-001 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.28 1 NA NA NA NA NA LTS-001 chr9 117085363 117092752 7390 * c(ORM1, ORM2) 0.434935317029523 2 0.00282842712474623 0.307097453679513 70 0.382204713826532 0 0 0 -6.76998693519978 LTS-001 chr9 117092753 123166505 6073753 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.255711260682195 42 0.0461085234523873 0.845866079385082 1679 0.218570970066597 2 2 0 -7.22055406077817 LTS-001 chr9 123166506 123169321 2816 * CDK5RAP2 NA 0 NA 0.753 1 NA NA NA NA NA LTS-001 chr9 123169322 123955793 786472 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, RAB14, CDK5RAP2, PSMD5, TRAF1, C5) 0.306110548211524 27 0.0484020142737364 0.737294813109716 1289 0.164175643635991 2 2 0 -7.19202763425241 LTS-001 chr9 123955794 124043000 87207 * c(GSN, RAB14) NA 0 NA 0.82 1 NA NA NA NA NA LTS-001 chr9 124043001 135569143 11526143 * c(LOC100129034, LOC100272217, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, POMT1, ZBTB6, NEK6, USP20, SLC27A4, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, OR1Q1, TTLL11, TTC16, OLFML2A, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, STOM, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NA NA NA NA NA NA NA NA NA LTS-001 NUP188, FPGS, RABGAP1, ABL1, NR5A1, PHYHD1, MORN5, OR1L4, CIZ1, GAPVD1, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, LRRC8A, BARHL1, SH3GLB2, PSMB7, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, MIR600HG, URM1, ARPC5L, AIF1L, UCK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C4, LHX2, MED27, PTGES, RALGPS1) 0.267639659725532 222 0.0606868324014447 0.799741803291326 14753 0.259647065991053 2 2 0 -6.79735787085151 LTS-001 NA NA NA NA LTS-001 chr9 135569144 137736650 2167507 * c(RNU6ATAC, MIR4669, LOC101448202, CEL, CELP, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, AK8, DBH, STKLD1, SARDH, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, TMEM8C, REXO4, RALGDS, RPL7A, RXRA, FAM163B, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, VAV2, BRD3, GFI1B, GTF3C5, ADAMTSL2) 0.258086882788432 73 0.0576727139384728 0.842643511014554 3028 0.374113380242394 2 2 0 -6.79658099387717 LTS-001 chr9 137736651 137742545 5895 * c(MIR3689A, MIR3689B, MIR3689D1, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, COL5A1) 0.078 1 NA 1.05172483420222 11 0.19251380115816 4 4 0 -5.76512251073583 LTS-001 chr9 137742546 138898672 1156127 * c(LINC01502, PPP1R26-AS1, MIR3689F, LOC101448202, UBAC1, OLFM1, NACC2, C9orf116, CAMSAP1, C9orf62, FCN1, FCN2, OBP2A, GLT6D1, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, KCNT1, PPP1R26) 0.249941937295257 29 0.051599227664438 0.828029264224114 1102 0.553756013228801 2 2 0 -6.79190051195653 LTS-001 chr9 138898673 138898792 120 * NACC2 NA 0 NA 0.974 1 NA NA NA NA NA LTS-001 chr9 138898793 141070283 2171491 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, NACC2, LCN8, FAM69B, SLC34A3, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, MIR126, LCN10, NA NA NA NA NA NA NA NA NA LTS-001 STPG3, NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.21576808214001 125 0.0674896426940293 1.01094176027529 5968 0.337063465311277 3 3 0 -6.75976569564595 LTS-001 NA NA NA NA LTS-001 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.758454475070301 5 0.111571949879887 2 NA NA -5.76446607566174 LTS-001 chr10 94832 94870 39 * TUBB8 0.429 1 NA 0.959 1 NA NA NA NA NA LTS-001 chr10 94871 1779703 1684833 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, TUBB8, LINC00200, PRR26, IDI2-AS1, ADARB2-AS1, IDI2) 0.376697542598357 17 0.0399569621409012 1.42584390390321 1172 0.312540903788996 6 4 2 -6.76948077730888 LTS-001 chr10 3109703 17277314 14167612 * c(PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, OPTN, NET1, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, LINC00705, AKR1C8P, IL2RA, IL15RA, ITIH2, AKR1C6P, C1QL3, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, NA NA NA NA NA NA NA NA NA LTS-001 CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, RSU1, DCLRE1C, MEIG1, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, PTER, NMT2, USP6NL) 0.437662657772883 226 0.0873684686917078 1.04367101477794 7407 0.287479126142043 3 2 1 -7.43914105653364 LTS-001 NA NA NA NA LTS-001 chr10 17277315 17277788 474 * VIM NA 0 NA 1.377 1 NA NA NA NA NA LTS-001 chr10 17277789 17813397 535609 * c(ST8SIA6-AS1, ST8SIA6, TMEM236, VIM, STAM, HACD1) 0.4113082526947 6 0.0183675438387027 1.26984832260645 243 0.297083831797236 5 3 2 -6.8467743117588 LTS-001 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.087 1 NA NA NA NA NA LTS-001 chr10 17842448 17898391 55944 * c(MRC1, NA, TMEM236) 0 1 NA 0.600027316574878 42 0.513552452404328 1 1 0 -5.76441401362147 LTS-001 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 1.959 1 NA NA NA NA NA LTS-001 chr10 17905571 26459436 8553866 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, NA, GPR158, ARHGAP21, DNAJC1, BMI1, TMEM236, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.441389636749325 76 0.0814399358907823 1.10386556828416 3453 0.343188643241163 4 2 2 -6.79997526036505 LTS-001 chr10 26459437 26462613 3177 * MYO3A NA 0 NA 0.882 1 NA NA NA NA NA LTS-001 chr10 26462614 38645343 12182730 * c(ABI1, MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, ZNF248, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CCDC7, EPC1, NA NA NA NA NA NA NA NA NA LTS-001 FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.447270899683396 113 0.0833383770070816 1.04772848677302 4951 0.34219639516751 4 2 2 -7.21697967932469 LTS-001 NA NA NA NA LTS-001 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.09796462478231 55 0.212679751663568 4 NA NA -5.76678189724602 LTS-001 chr10 42379879 42947161 567283 * LOC441666 0.273472805122464 5 0.103873480734979 1.07519497797009 47 1.06154288468352 2 2 0 -6.76794658302896 LTS-001 chr10 42947162 42949600 2439 * character(0) NA 0 NA 1.176 1 NA NA NA NA NA LTS-001 chr10 42949601 47903204 4953604 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, FXYD4, NPY4R, CSGALNACT2, NA, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, LINC00839, NA NA NA NA NA NA NA NA NA LTS-001 ZFAND4, GPRIN2, BMS1) 0.406554993493884 52 0.0870446479633576 1.11522354324968 2025 0.261197379381857 4 2 2 -6.82664187793233 LTS-001 NA NA NA NA LTS-001 chr10 47903205 48033122 129918 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.451837308797919 45 0.256588234769684 0 NA NA -5.77374577894695 LTS-001 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.246 1 NA NA NA NA NA LTS-001 chr10 48054940 49701703 1646764 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.442650658802576 11 0.0420328875568124 1.2621994086139 670 0.396617395667204 4 2 2 -6.81421216280116 LTS-001 chr10 49701704 49732037 30334 * c(NA, ARHGAP22) NA 0 NA 0.789 1 NA NA NA NA NA LTS-001 chr10 49732038 50310461 578424 * c(MIR4294, VSTM4, LRRC18, NA, WDFY4, ARHGAP22) 0.363671214454141 11 0.209931633893253 1.13904084522781 523 0.23291243664888 4 3 1 -6.74110273128772 LTS-001 chr10 50310462 50315893 5432 * c(VSTM4, NA) 0.495 1 NA 1.06706068348191 37 0.184615817307185 4 4 0 -5.76490480533975 LTS-001 chr10 50315894 51051527 735634 * c(FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, NA, OGDHL, DRGX, SLC18A3, PARG) 0.472760557811516 36 0.0171899518453207 1.13033979630934 996 0.251104364222427 4 2 2 -8.81900378872384 LTS-001 chr10 51051528 51537226 485699 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.495094388674462 40 0.483827522112835 0 NA NA -5.80460590763197 LTS-001 chr10 51537227 63172648 11635422 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.45009622088249 99 0.0659968952875072 1.16218986229248 3160 0.320162863565196 4 2 2 -6.77971336792659 LTS-001 chr10 63172649 71174736 8002088 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.435946207434226 68 0.118949944652144 1.05642179933961 3734 0.28425991521782 4 2 2 -7.10782691361948 LTS-001 chr10 71174737 73575559 2400823 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.453166228623101 58 0.0410150843542422 1.14631491203248 2584 0.259551868027168 4 2 2 -6.85792054485851 LTS-001 chr10 73575560 77542850 3967291 * c(ZNF503-AS2, MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, C10orf11, PLA2G12B, ZNF503, NDST2, MCU, CHST3, SEC24C, NA NA NA NA NA NA NA NA NA LTS-001 SPOCK2) 0.447471479687025 94 0.0778189152684163 1.07693312158037 3856 0.240430049946046 4 2 2 -6.9080637320815 LTS-001 NA NA NA NA LTS-001 chr10 77542851 81145535 3602685 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.460428400491206 20 0.0289705385739229 1.14627061392146 1202 0.279687107851209 4 2 2 -7.18659489245001 LTS-001 chr10 81145536 81270253 124718 * ZCCHC24 0.244 1 NA 1.18574644252636 53 0.325701494800883 4 4 0 -5.76520315529843 LTS-001 chr10 81270254 81319267 49014 * c(EIF5AL1, SFTPA2) 0.290982315868668 9 0.189214678195019 1.17647954526786 147 0.377165135414069 5 4 1 -6.73622083435861 LTS-001 chr10 81319268 81319400 133 * SFTPA2 0.415 1 NA 1.56112200240968 5 0.636765027305991 6 6 0 -5.7644103240398 LTS-001 chr10 81319401 82369219 1049819 * c(BMS1P21, DYDC1, TMEM254-AS1, PLAC9, ANXA11, SH2D4B, MAT1A, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P) 0.454065932624639 59 0.0466926856857873 1.13046575914045 946 0.345407864011522 4 2 2 -6.84018199270264 LTS-001 chr10 82369220 84118597 1749378 * c(NRG3, SH2D4B) NA 0 NA 1.3165373930079 111 0.256256162147997 5 NA NA -5.76605271768642 LTS-001 chr10 84118598 84498267 379670 * NRG3 NA 0 NA 0.9 1 NA NA NA NA NA LTS-001 chr10 84498268 84625107 126840 * NRG3 0.292 1 NA 0.83251349438588 13 0.165562096182392 2 2 0 -5.77615912188086 LTS-001 chr10 84625108 88445385 3820278 * c(GRID1-AS1, NRG3, LDB3, LINC00858, WAPL, LRIT1, GHITM, GRID1, LRIT2, C10orf99, MIR346, CCSER2, RGR, CDHR1, OPN4) 0.218932942821847 22 0.0763802999238038 0.924341038004137 1117 0.238628507170255 3 3 0 -6.80290911812735 LTS-001 chr10 88445386 88478617 33232 * LDB3 NA 0 NA 0.972492353090358 63 0.169337704202331 3 NA NA -5.76447232445052 LTS-001 chr10 88478618 88485874 7257 * LDB3 NA 0 NA 0.342 1 NA NA NA NA NA LTS-001 chr10 88485875 88492235 6361 * LDB3 0.444 1 NA 0.344769479423823 9 0.0369462823268834 0 0 0 -5.85519497477056 LTS-001 chr10 88492236 89730886 1238651 * c(KLLN, MIR4678, ADIRF, LDB3, AGAP11, CFL1P1, GLUD1, LINC00863, FAM35A, PTEN, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, PAPSS2, MINPP1) 0.422133913370778 23 0.125763235106083 0.418377281148077 1013 0.12640421096787 0 0 0 -6.74521064636331 LTS-001 chr10 89730887 89730980 94 * character(0) NA 0 NA 0.915 1 NA NA NA NA NA LTS-001 chr10 89730981 90044789 313809 * RNLS 0.357 1 NA 0.745988464362755 43 0.177282716820557 2 2 0 -5.77631578718179 LTS-001 chr10 90044790 90366737 321948 * c(LIPJ, RNLS) 0 1 NA 0.70938664355664 135 0.1839742032533 2 2 0 -5.81540910524123 LTS-001 chr10 90366738 98393081 8026344 * c(C10orf131, PLCE1-AS1, HECTD2-AS1, FAS-AS1, MIR3157, MARK2P9, MIR4679-1, MIR4679-2, LINC00502, RPP30, SORBS1, PIK3AP1, FRA10AC1, ANKRD22, NUDT9P1, ACSM6, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, DNTT, CPEB3, TBC1D12, IFIT5, TCTN3, MYOF, PIPSL, ANKRD1, FLJ37201, BLNK, HELLS, HHEX, HTR7, FFAR4, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, CC2D2B, LIPA, MIR107, NA NA NA NA NA NA NA NA NA LTS-001 IFIT1B, PLCE1, PDE6C, PANK1, EXOC6, CCNJ, MARCH5, PPP1R3C, CEP55, TM9SF3, STAMBPL1, ALDH18A1, ACTA2, RBP4, NOC3L, LIPK, LIPN, LINC00865, TLL2, ENTPD1-AS1, TNKS2, PCGF5, LIPF, CH25H, BTAF1, PDLIM1, LGI1, OPALIN, ENTPD1, KIF20B, ZNF518A) 0.249010537971394 177 0.054472744724516 0.788413951448846 6988 0.224785697702295 2 2 0 -6.79529680232579 LTS-001 NA NA NA NA LTS-001 chr10 98393082 98405162 12081 * PIK3AP1 NA 0 NA 0.503 1 NA NA NA NA NA LTS-001 chr10 98405163 98708942 303780 * c(PIK3AP1, LCOR) 0.182 1 NA 0.43368167123453 57 0.113764682051178 0 0 0 -5.79648960700912 LTS-001 chr10 98708943 106207451 7498509 * c(TLX1NB, MIR936, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4482, MIR4685, MIR5692C2, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, MORN4, ZFYVE27, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, CYP17A1, NKX2-3, CFAP58, FGF8, NT5C2, PDCD11, PPRC1, RRP12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, NA NA NA NA NA NA NA NA NA LTS-001 C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, KCNIP2, TLX1, HPS1, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, SUFU, PGAM1, PITX3, CNNM2, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, ENTPD7, AS3MT, MIR146B, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, NEURL1, NOLC1, GSTO1, SH3PXD2A, SLK) 0.261450287354284 194 0.048432822430176 0.773518996068622 10505 0.188416810805686 2 2 0 -6.74518552889138 LTS-001 NA NA NA NA LTS-001 chr10 106207452 106401447 193996 * c(CFAP58, SORCS3) NA 0 NA 0.823997613118994 34 0.159378169990494 2 NA NA -5.77815637882039 LTS-001 chr10 106401448 106602537 201090 * SORCS3 0.149 1 NA 1.42593591061498 19 2.55150753626211 6 6 0 -5.7644756092666 LTS-001 chr10 106602538 111648455 5045918 * c(SORCS1, SORCS3, XPNPEP1) 0.177141362793883 11 0.0314110576939801 1.1748883313876 428 0.300309110041473 4 4 0 -6.7589545717557 LTS-001 chr10 111648456 111651482 3027 * XPNPEP1 NA 0 NA 0.984 1 NA NA NA NA NA LTS-001 chr10 111651483 112839122 1187640 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.159141322150085 11 0.0378122154384484 1.03741389552306 981 0.262840949131897 4 4 0 -7.017121418406 LTS-001 chr10 112839123 114927455 2088333 * c(MIR4295, VTI1A, ADRA2A, GUCY2GP, ACSL5, GPAM, ZDHHC6, TCF7L2, TECTB) 0.200920904962471 18 0.0408203460739221 1.17863515501512 813 0.287719069445706 4 4 0 -6.89360317987137 LTS-001 chr10 114927456 115312766 385311 * HABP2 NA 0 NA 0.767 1 NA NA NA NA NA LTS-001 chr10 115312767 116227980 915214 * c(MIR2110, MIR4483, ADRB1, HABP2, VWA2, NHLRC2, ABLIM1, NRAP, CCDC186, TDRD1, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.262162210626815 29 0.0477735576222011 0.771952695032078 1650 0.213789250466544 2 2 0 -6.73648099087248 LTS-001 chr10 116227981 116232740 4760 * ABLIM1 NA 0 NA 1.149 1 NA NA NA NA NA LTS-001 chr10 116232741 117228907 996167 * c(TRUB1, ATRNL1, ABLIM1, FAM160B1) 0.17993867325865 3 0.0411865673895426 1.07762842491276 450 0.289091083203076 4 4 0 -6.76051464650504 LTS-001 chr10 117228908 117278717 49810 * ATRNL1 NA 0 NA 1.273 1 NA NA NA NA NA LTS-001 chr10 117278718 119308575 2029858 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.159967317626621 20 0.0735713760128289 1.22658824518035 1422 0.323852298424828 5 5 0 -6.8103411180985 LTS-001 chr10 119308576 122263114 2954539 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.18562074816274 17 0.0696055588550901 1.056411120667 1621 0.245317924038694 4 4 0 -6.92815218362136 LTS-001 chr10 122263115 129350929 7087815 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, TACC2, ATE1, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, HTRA1, BCCIP, PLEKHA1, NPS, LHPP, FAM196A, NA NA NA NA NA NA NA NA NA LTS-001 IKZF5, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.199019279213135 138 0.068036411928786 1.15857588604929 4508 0.293386682492361 4 4 0 -6.78333036811876 LTS-001 NA NA NA NA LTS-001 chr10 129350930 129534536 183607 * NPS NA 0 NA 0.861 1 NA NA NA NA NA LTS-001 chr10 129534537 132944958 3410422 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, CLRN3, EBF3, TCERG1L, LINC00959, FOXI2, MGMT, MKI67, PTPRE) 0.222356983150307 10 0.116270995714514 0.77559958040376 894 0.206483128813925 2 2 0 -6.81430803092969 LTS-001 chr10 132944959 133608171 663213 * c(TCERG1L, LINC01164) 0.269 1 NA 0.783439632263701 45 0.27440925161834 2 2 0 -5.76451059384155 LTS-001 chr10 133608172 134693137 1084966 * c(DPYSL4, C10orf91, PWWP2B, JAKMIP3, STK32C, INPP5A, LINC01164, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.296638444724669 42 0.0573902224308464 0.831845978603727 987 0.257362406755065 2 2 0 -6.95019128720337 LTS-001 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.433 1 NA NA NA NA NA LTS-001 chr10 134694406 134756359 61954 * CFAP46 0.32102082179097 9 0.05622746462164 0.416725932465743 172 0.0840030931087825 1 1 0 -7.4602052133251 LTS-001 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.23 1 NA NA NA NA NA LTS-001 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.309744106479058 36 0.0837119020192621 0.818923106200947 1392 0.240244744936129 2 2 0 -6.91401618820234 LTS-001 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.014 1 NA NA NA NA NA LTS-001 chr11 193025 193096 72 * SCGB1C1 0.182 1 NA 0.133 1 NA NA NA NA NA LTS-001 chr11 193097 1009787 816691 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.243800561381322 106 0.0826650283870936 0.78286046805577 2896 0.299975277478738 2 2 0 -6.77238502756359 LTS-001 chr11 1009788 1009792 5 * AP2A2 NA 0 NA 0.866 1 NA NA NA NA NA LTS-001 chr11 1009793 1013987 4195 * c(AP2A2, MUC6) 0.33664591358505 2 0.0176776695296637 0.825843977878009 60 0.151051665497993 4 3 1 -6.7631577026686 LTS-001 chr11 1013988 1016869 2882 * MUC6 0.345 1 NA 0.86425388039558 24 0.198894772266097 2 2 0 -5.76486947952308 LTS-001 chr11 1016870 1563591 546722 * c(TOLLIP-AS1, MUC2, MUC6, TOLLIP, MUC5B, MOB2, BRSK2) 0.296052796747876 113 0.0954443853194166 0.887537065428939 1317 0.243086438912377 2 2 0 -6.88693704095018 LTS-001 chr11 1563592 4510270 2946679 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, DUSP8, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR52K1, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, NA NA NA NA NA NA NA NA NA LTS-001 MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, MOB2, CARS, SYT8, CD81) 0.2608878158329 106 0.0559853248965618 0.786996506929856 3060 0.21667540507506 2 2 0 -6.73927456206874 LTS-001 NA NA NA NA LTS-001 chr11 4510271 5777005 1266735 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, MMP26, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, NA NA NA NA NA NA NA NA NA LTS-001 TRIM5) 0.27869781437734 137 0.0527940588031644 0.8643195969896 1958 0.27666050933865 2 2 0 -6.87578897371007 LTS-001 NA NA NA NA LTS-001 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.441 1 NA NA NA NA NA LTS-001 chr11 5798827 5809605 10779 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.286059033311883 2 0.0353553390593274 1.36687710163417 40 0.442701508514513 12 9 3 -6.75264964012674 LTS-001 chr11 5809606 8932870 3123265 * c(TRIM22, TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, CYB5R2, AKIP1, RPL27A, SNORA3A, MRPL17, STK33, NA NA NA NA NA NA NA NA NA LTS-001 SMPD1, ST5, SNORA3B, TAF10, TUB, ZNF214, ZNF215, OR52N1, RIC3, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.26350733876156 191 0.058003736066138 0.810450891085132 4806 0.213396282174592 2 2 0 -6.79307107016613 LTS-001 NA NA NA NA LTS-001 chr11 8932871 8932922 52 * AKIP1 NA 0 NA 0.662 1 NA NA NA NA NA LTS-001 chr11 8932923 17396606 8463684 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, NCR3LG1, INSC, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPS13, LOC644656, RASSF10, NA NA NA NA NA NA NA NA NA LTS-001 SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.260225915399151 88 0.0718360119825346 0.763638957347937 5355 0.306999417434375 2 2 0 -6.75991022501168 LTS-001 NA NA NA NA LTS-001 chr11 17396607 17804122 407516 * c(USH1C, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8) 0.27350661690074 11 0.0626808655738808 0.84202602021611 1045 0.276065044315831 2 2 0 -6.76270902962896 LTS-001 chr11 17804123 18720488 916366 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, KCNC1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.288356783417299 23 0.0787011659239338 0.728429408473428 1255 0.180479662774913 2 2 0 -6.86336585900484 LTS-001 chr11 18720489 31484933 12764445 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.293318078152607 99 0.0712243313786374 0.78928034745784 4133 0.197769271308088 2 2 0 -6.85334946035465 LTS-001 chr11 31484934 31531245 46312 * IMMP1L NA 0 NA 1.294 1 NA NA NA NA NA LTS-001 chr11 31531246 45877459 14346214 * c(C11orf91, MIR670, LOC100507205, ALKBH3-AS1, LOC100507384, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, CRY2, LDLRAD3, CSTF3, ELF5, EXT2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, LMO2, MIR129-2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, HSD17B12, WT1-AS, TRIM44, NAT10, SLC35C1, TCP11L1, TTC17, PRDM11, NA NA NA NA NA NA NA NA NA LTS-001 SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, TRAF6, SEC14L1P1, WT1, PRRG4, QSER1, PRR5L, PDHX, ACCS, CAT, CHST1, API5, TSPAN18, DEPDC7, TP53I11, CD44, CD59) 0.247367215350297 155 0.0558884497031545 0.857938829251069 6067 0.259587752424265 2 2 0 -7.77133965824515 LTS-001 NA NA NA NA LTS-001 chr11 45877460 45877558 99 * CRY2 NA 0 NA 0.794 1 NA NA NA NA NA LTS-001 chr11 45877559 47447816 1570258 * c(MIR3160-2, MIR3160-1, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, F2, HARBI1, PACSIN3, ARHGAP1, LRP4, MDK, MYBPC3, PHF21A, ACP2, AMBRA1, PSMC3, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, DGKZ, MADD, CREB3L1, SLC39A13, PEX16, MAPK8IP1, ATG13, CKAP5) 0.273216608890762 45 0.0391000012916893 0.794702985183197 2882 0.192520388652283 2 2 0 -6.76808232673435 LTS-001 chr11 47447817 48285906 838090 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.262973646176986 27 0.0782465604133767 0.737616699909656 1164 0.167295223462899 2 2 0 -6.78908427818621 LTS-001 chr11 48285907 48286256 350 * OR4X1 0.248 1 NA 1.10319321531582 7 0.690402712018069 4 4 0 -5.76441079029728 LTS-001 chr11 48286257 48286424 168 * OR4X1 NA 0 NA 0.830879160654064 5 0.0773614891273429 2 NA NA -5.76447690230877 LTS-001 chr11 48286425 48327745 41321 * character(0) NA 0 NA 1.388 1 NA NA NA NA NA LTS-001 chr11 48327746 48388657 60912 * c(OR4C3, OR4S1, OR4C45) 0.36720021986793 115 0.0876384840704139 1.30319857592717 211 0.57235132822843 6 4 2 -6.74299643141921 LTS-001 chr11 48388658 48388675 18 * character(0) NA 0 NA 0.892 1 NA NA NA NA NA LTS-001 chr11 48388676 49437288 1048613 * c(FOLH1, TRIM49B, OR4A47, TRIM64C) 0.312062911931635 16 0.0730102447149257 0.788770548839411 307 0.283136905487705 2 2 0 -6.97327959323402 LTS-001 chr11 49437289 49454984 17696 * character(0) NA 0 NA 1.278 1 NA NA NA NA NA LTS-001 chr11 49454985 51527637 2072653 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) 0.349121152750085 7 0.0465715016067204 1.04217729731397 161 0.389987619547879 4 3 1 -6.83100562988057 LTS-001 chr11 51527638 51527703 66 * character(0) NA 0 NA 0.996 1 NA NA NA NA NA LTS-001 chr11 55035776 55339829 304054 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) 0.446 1 NA 0.974124824669403 75 0.206646268682404 3 3 0 -5.76493974116563 LTS-001 chr11 55339830 56467926 1128097 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, OR4P4, TRIM51) 0.382511615480496 37 0.0779959573911967 1.06639607586888 959 0.219723177507096 3 2 1 -6.90435394694827 LTS-001 chr11 56467927 56468021 95 * c(OR8U8, OR9G9) 0.092 1 NA 1.05820864415977 3 0.333473137348923 4 4 0 -5.76441340198585 LTS-001 chr11 56468022 56468835 814 * c(OR8U8, OR9G9) 0.268870743205875 29 0.172263195066109 1.38593091403515 45 0.469992620831821 2 2 0 -6.73405870667242 LTS-001 chr11 56468836 56508541 39706 * OR8U8 0.419 1 NA 0.827755491425572 3 0.110906867836637 2 2 0 -5.7712323112622 LTS-001 chr11 56508542 57080674 572133 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, OR8U8, TNKS1BP1) 0.434894239901796 10 0.0254996732005203 1.05907708772956 340 0.26251141701951 4 2 2 -6.76467908608599 LTS-001 chr11 57080675 60568212 3487538 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, NA NA NA NA NA NA NA NA NA LTS-001 P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.404536978685278 88 0.0834009769869781 0.982905411598161 4038 0.21382392224978 3 2 1 -6.75328201573409 LTS-001 NA NA NA NA LTS-001 chr11 60568213 60617913 49701 * c(MS4A10, CCDC86) 0.463 1 NA 0.852064548961316 45 0.137710103940389 2 2 0 -5.77665319324906 LTS-001 chr11 60617914 77413809 16795896 * c(NAALADL1, KCNE3, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1908, MIR1237, MIR548K, MIR3165, MIR3664, TPBGL, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4696, MIR4691, MIR4692, MIR4488, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, POLD3, CFL1, STARD10, NEU3, YIF1A, EHD1, STIP1, NA NA NA NA NA NA NA NA NA LTS-001 SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, PTGDR2, CHRM1, SLCO2B1, CDCA5, RPLP0P2, SLC22A9, SNORD15B, BATF2, SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, HRASLS5, CLNS1A, COX8A, CPT1A, XRRA1, C11orf84, CST6, CTSW, GRK2, DDB1, GPHA2, DHCR7, B3GNT6, EEF1G, MARK2, CTTN, ESRRA, FAU, MRPL21, TPCN2, VWCE, CYB561A3, PPP1R32, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FEN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 FGF3, FGF4, FKBP2, ZP1, SHANK2, KDM2A, ATG2A, GANAB, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, DEFB108B, PELI3, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, RNF169, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, CHRDL2, ANAPC15, ATL3, TSKU, C2CD3, TKFC, DKFZP434K028, LRRC32, B3GAT3, PPP1R14B, MYEOV, BSCL2, NPAS4, PRPF19, GNG3, AQP11, MAJIN, SLC25A45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NEAT1, P4HA3, PGM2L1, KLHL35, LOC283214, CCDC88B, TTC9C, SLC22A24, RCOR2, ALG1L9P, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, OR2AT4, TBX10, IGHMBP2, INCENP, INPPL1, TMEM179B, TBC1D10C, DNAJB13, MALAT1, KRTAP5-9, KRTAP5-10, SLC22A25, SLC22A10, SPDYC, LIPT2, LRRC10B, GPR152, DOC2GP, GUCY2EP, FADS1, FADS3, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, SCGB1D4, LTBP3, MIR139, MIR192, MIR194-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ARRB1, MAP6, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFV1, NDUFS8, NUMA1, OMP, OVOL1, P2RY2, P2RY6, PAK1, KCNK4, PC, UBXN1, GAL, KMT5B, TMEM216, COA4, SLC15A3, PDE2A, PPME1, CABP2, TRMT112, TMEM138, MRPL48, RSF1, PGA5, PLCB3, C11orf24, POLR2G, WDR74, SDHAF2, SSH3, TMEM132A, HRASLS2, PPP1CA, LAMTOR1, VPS37C, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RNF121, ACER3, CDC42BPG, OTUB1, PACS1, SLC22A11, THAP12, GPR137, EMSY, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, RAB3IL1, RAB6A, MAP4K2, RAD9A, RARRES3, RBM4, CCND1, RELA, DPF2, SNORD15A, ROM1, RPS3, RPS6KB2, PGA3, PGA4, FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, MIR611, TM7SF2, CAPN5, UCP2, UCP3, SCGB1A1, VPS51, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MRPL49, UVRAG, ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, WNT11, METTL12, SF1, ZFPL1, LRFN4, AHNAK, TMEM223, TMEM109, CCDC86, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, CPSF7, ASRGL1, MOGAT2, TMEM134, MUS81, PAAF1, FOSL1, INTS5, GDPD5, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, DGAT2, RELT, PPFIA1, LGALS12, SERPINH1, CTSF, FADD, BANF1, ACTN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 GAL3ST3, ATG16L2, RPS6KA4, AIP, SYT7, SART1, AP5B1, FIBP, SYT12, ACY3, CD5, MTA2, CD6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, FADS2, PITPNM1, RIN1, TESMIN, SPCS2, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.391561043917588 476 0.0812160661080886 0.966397101737043 28213 0.245944916155187 3 2 1 -6.74111836179789 LTS-001 NA NA NA NA LTS-001 chr11 77413810 77849802 435993 * c(NDUFC2-KCTD14, AAMDC, NDUFC2, RSF1, KCTD14, THRSP, ALG8, INTS4) 0.438930408435094 7 0.0290803484619195 0.871222704597995 380 0.180820733359954 2 1 1 -6.84472748331521 LTS-001 chr11 77849803 78781161 931359 * c(KCTD21-AS1, TENM4, KCTD21, USP35, ALG8, NARS2, GAB2) 0.376847400249884 33 0.0691376673417215 1.02080203618334 803 0.232672968992085 3 2 1 -6.8338160157886 LTS-001 chr11 78781162 78781172 11 * TENM4 NA 0 NA 0.982 1 NA NA NA NA NA LTS-001 chr11 78781173 89951426 11170254 * c(NAALAD2, MIR708, SNORA70E, MIR4300, RAB30-AS1, LOC100506368, MIR5579, GRM5-AS1, CTSC, ME3, PRSS23, TRIM64, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, TENM4, CHORDC1, RAB30, GRM5, ANKRD42, TRIM77, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, TRIM49, CREBZF, CCDC90B, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.374077443043765 89 0.0848884174174813 0.920292278877277 3729 0.27490521790723 3 2 1 -6.96813832400372 LTS-001 chr11 89951427 89955804 4378 * CHORDC1 NA 0 NA 1.003 1 NA NA NA NA NA LTS-001 chr11 89955805 92715608 2759804 * c(MIR4490, FAT3, CHORDC1, MTNR1B) 0.43555668450547 6 0.0328247873818958 1.07074655308494 508 0.199516519236061 4 2 2 -6.92298981206455 LTS-001 chr11 92715609 100900476 8184868 * c(MIR1304, MIR1260B, JRKL-AS1, GPR83, SLC36A4, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, MTNR1B, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CCDC82, TMEM133, MAML2, CEP295, JRKL, MTMR2, MED17, CEP57) 0.38846182310723 70 0.0964255621031846 0.95985657485339 3433 0.231261654076342 3 2 1 -6.74275775833113 LTS-001 chr11 100900477 100909942 9466 * PGR 0.285104105309254 9 0.0325115364140177 1.41484029476768 197 0.284051867045564 12 9 3 -6.77053377310882 LTS-001 chr11 100909943 106810634 5900692 * c(WTAPP1, MIR3920, CASP12, MIR4693, LOC101054525, YAP1, CARD16, TMEM123, KBTBD3, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, PGR, CEP126, CARD18, AASDHPPT, MMP27, LOC643733, TRPC6, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, DCUN1D5, MSANTD4, C11orf70, MMP20) 0.387246998468736 69 0.0976555549719513 0.952588658194513 3141 0.252266179670435 3 2 1 -6.75018382557515 LTS-001 chr11 106810635 107463247 652613 * c(CWF19L2, GUCY1A2, ELMOD1, LOC643923, ALKBH8) 0.233178249427467 4 0.031148836254345 0.760981068716365 266 0.188308964757318 2 2 0 -7.30921482216394 LTS-001 chr11 107463248 119025714 11562467 * c(LOC100131626, LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, EXPH5, PHLDB1, SIK2, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, NA NA NA NA NA NA NA NA NA LTS-001 BCL9L, FOXR1, H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, KMT2A, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, USP28, PTS, RDX, RPS25, SCN2B, SCN4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SDHD, ABCG4, CXCR5, LOC643923, CLDN25, C11orf1, RPL23AP64, SLN, TAGLN, UPK2, ZBTB16, ALG9, CUL5, TMPRSS5, BCO2, TMPRSS13, BUD13, TMEM25, DIXDC1, ZC3H12C, ZPR1, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, FDXACB1, UBE4A, C2CD2L) 0.382809805024598 153 0.10210098444732 0.953848327385962 11112 0.333716322888766 3 2 1 -6.75601710288643 LTS-001 NA NA NA NA LTS-001 chr11 119025715 119027054 1340 * ABCG4 NA 0 NA 1.284 1 NA NA NA NA NA LTS-001 chr11 119027055 134856603 15829549 * c(LOC100128239, PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, CCDC153, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, NA NA NA NA NA NA NA NA NA LTS-001 C11orf44, MIR4697HG, LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TP53AIP1, ABCG4, HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, THY1, ZNF202, RNF26, FAM118B, NLRX1, MSANTD2, CLMP, PDZD3, C11orf63, CCDC15, PUS3, MFRP, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, GLB1L2, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.388408826599864 310 0.0772291441336916 0.991065495248341 11633 0.337240456821583 3 2 1 -6.81292878927741 LTS-001 NA NA NA NA LTS-001 chr11 134856604 134856681 78 * character(0) NA 0 NA 0.707270400537755 3 0.00923760430703402 2 NA NA -5.76959691992094 LTS-001 chr12 90923 250239 159317 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.357 1 NA 0.91521778515334 57 0.247914376792778 3 3 0 -5.76849124293246 LTS-001 chr12 250240 1553865 1303626 * c(ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, CCDC77) 0.38381351109659 48 0.0728708660615981 0.932619923348593 1486 0.269445174384147 3 2 1 -6.77364925996351 LTS-001 chr12 1553866 1589905 36040 * ERC1 NA 0 NA 0.663 1 NA NA NA NA NA LTS-001 chr12 1589906 1605126 15221 * ERC1 0.351 1 NA 0.616475303165843 120 0.1153445329199 1 1 0 -5.76513789602035 LTS-001 chr12 1605127 1675110 69984 * LINC00942 NA 0 NA 1.091 1 NA NA NA NA NA LTS-001 chr12 1675111 3409277 1734167 * c(LINC00940, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, LOC283440, ITFG2, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CACNA2D4) 0.38736488832732 39 0.0475907968059034 1.01782098929606 1786 0.23638579682762 3 2 1 -6.83061992638526 LTS-001 chr12 3409278 3490468 81191 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-001 chr12 3490469 7655278 4164810 * c(LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, FGF6, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NDUFA9, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, NA NA NA NA NA NA NA NA NA LTS-001 VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, FGF23, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CD163, CD27, CLSTN3, NCAPD2) 0.404645094892637 115 0.0609662321661007 0.959396388295316 5833 0.216520271909758 3 2 1 -6.73746205477126 LTS-001 NA NA NA NA LTS-001 chr12 7655279 7655319 41 * CD163 NA 0 NA 0.81 1 NA NA NA NA NA LTS-001 chr12 7655320 9361034 1705715 * c(KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.393788194292626 43 0.0835349742074306 0.914153274022034 2049 0.291449859978471 3 2 1 -6.76921593269695 LTS-001 chr12 9361035 9446959 85925 * c(LINC00987, A2MP1, LOC642846) NA 0 NA 0.133 1 NA NA NA NA NA LTS-001 chr12 9446960 9456836 9877 * LOC642846 0.266465431887004 2 0.000707106781186548 0.331070765570586 40 0.345670511562821 17 13 4 -7.02421713662104 LTS-001 chr12 9456837 9458244 1408 * LOC642846 NA 0 NA 0.982 1 NA NA NA NA NA LTS-001 chr12 9458245 9590665 132421 * c(DDX12P, LOC642846) 0.334692562043931 12 0.0705074141813856 0.984168210394562 131 0.608348803584961 4 3 1 -6.74110578740991 LTS-001 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.08 1 NA NA NA NA NA LTS-001 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.0800051433870697 93 0.0349798880304085 0 NA NA -16.7069287620311 LTS-001 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.515 1 NA NA NA NA NA LTS-001 chr12 9747241 10783729 1036489 * c(KLRF2, KLRC4-KLRK1, KLRA1P, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, CLEC7A, KLRC4, CD69, CLEC2B) 0.389242369627166 51 0.0547704944182863 0.864744945056002 1406 0.237594118408435 3 2 1 -6.88168440525779 LTS-001 chr12 10783730 10962891 179162 * c(TAS2R9, TAS2R8, TAS2R7, STYK1, YBX3) 0 1 NA 0.869812537709316 165 0.22661818125188 3 3 0 -5.78616279674219 LTS-001 chr12 10962892 11214038 251147 * c(PRH1-PRR4, PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2) 0.284986343473759 21 0.0736276669013309 0.93231980467898 303 0.209315819409174 2 2 0 -6.88426590660333 LTS-001 chr12 11214039 11214066 28 * c(PRH1-PRR4, TAS2R46, PRB4) 0.237 1 NA 1.928 1 NA NA NA NA NA LTS-001 chr12 11214067 11285824 71758 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) 0.237330321427047 18 0.0204789865200622 1.42266462252644 62 0.422952328125449 11 9 2 -6.80376714269838 LTS-001 chr12 11285825 11285832 8 * c(PRH1-PRR4, PRB4) NA 0 NA 0.58 1 NA NA NA NA NA LTS-001 chr12 11285833 11461553 175721 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB3, PRB4) 0.195457352769574 4 0.0288732863849384 0.96333486701207 85 0.179288513710331 3 3 0 -6.98620520673271 LTS-001 chr12 11461554 11461802 249 * PRB4 0.438 1 NA 0.916590394765583 3 0.100950482911178 3 3 0 -5.764446264686 LTS-001 chr12 11461803 13364528 1902726 * c(LOC100506314, CDKN1B, BORCS5, CREBL2, EMP1, ETV6, GPR19, LINC01252, RPL13AP20, LRP6, LOH12CR2, HEBP1, DDX47, MANSC1, PRB1, PRB4, GPRC5D, FAM234B, PRB2, MIR613, MIR614, BCL2L14, DUSP16, APOLD1, GSG1, GPRC5A, HTR7P1) 0.399743585409578 31 0.0476794403517707 0.948120178460324 1460 0.271104175106932 3 2 1 -6.736978456538 LTS-001 chr12 13364529 13366395 1867 * EMP1 NA 0 NA 1.513 1 NA NA NA NA NA LTS-001 chr12 13366396 13369717 3322 * EMP1 0.221 1 NA 1.38472441653102 64 0.259988308650448 5 5 0 -5.76445814724482 LTS-001 chr12 13369718 13524123 154406 * LINC01559 NA 0 NA 1.144 1 NA NA NA NA NA LTS-001 chr12 13524124 32797905 19273782 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506393, RASSF8-AS1, DDX11-AS1, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, STRAP, RASSF8, HIST4H4, ERP27, FGD4, AEBP2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EPS8, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GRIN2B, GUCY2C, GYS2, IAPP, SLCO1B7, SMCO2, OVCH1, ITPR2, KCNJ8, KRAS, REP15, LDHB, ARHGDIB, LRMP, NA NA NA NA NA NA NA NA NA LTS-001 ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, GOLT1B, DERA, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, SKP1P2, C12orf71, SLC15A5, BHLHE41, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, TMTC1, PPFIBP1, RERG, PLCZ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CAPZA3, MED21, C2CD5) 0.394491177543308 279 0.0657768721969628 0.946178012255636 9782 0.475775892481844 3 2 1 -6.75363903889741 LTS-001 NA NA NA NA LTS-001 chr12 32797906 34182671 1384766 * c(DNM1L, FGD4, SYT10, YARS2, PKP2, ALG10) NA 0 NA 0.977554442707289 489 0.241995898955196 3 NA NA -5.76745320967485 LTS-001 chr12 38710341 39945253 1234913 * c(ALG10B, CPNE8, ABCD2, KIF21A) 0.399 1 NA 0.920395497655602 425 0.202150047018134 3 3 0 -5.80187993699414 LTS-001 chr12 39945254 44338181 4392928 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ABCD2, C12orf40, GXYLT1, PDZRN4, IRAK4, PPHLN1, TWF1, ADAMTS20, PUS7L, TMEM117, ZCRB1) 0.364582054671255 67 0.0779335990545868 0.928076143951751 2700 0.212874336255873 3 2 1 -6.93402837141348 LTS-001 chr12 44338182 44403947 65766 * TMEM117 NA 0 NA 1.146 1 NA NA NA NA NA LTS-001 chr12 44403948 71551648 27147701 * c(HOTAIR, LOC100130075, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1279, MIR1228, MIR1293, LOC100335030, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, CCT2, AVIL, PTGES3, FRS2, OS9, ATF7, CPSF6, BAZ2A, WIF1, NA NA NA NA NA NA NA NA NA LTS-001 ADCY6, IRAK3, GALNT6, NXPH4, XPOT, KRT71, GPR182, LARP4, MBD6, ARHGEF25, C12orf56, AGAP2, DCD, RAB3IP, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, LRIG3, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, COL2A1, CPM, ASB8, MYL6B, KRT72, CS, BCDIN3D, BEST3, KRT80, C12orf66, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ANO6, ARID2, EIF4B, CELA1, RPSAP52, ERBB3, COPZ1, R3HDM2, FAIM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MON2, DDN, NEMP1, TBC1D30, ESYT1, TNS2, KCNH3, GRIP1, CBX5, ANP32D, SMUG1, LEMD3, STAC3, MSRB3, OR6C74, OR6C3, LINC00935, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, KCNMB4, GLI1, GNS, GPD1, LOC283332, LOC283335, ZNF740, RASSF3, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, LINC01465, DPY19L2, TMPRSS12, KRT6C, ORMDL2, TBK1, RACGAP1, SENP1, NCKAP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, FAM19A2, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, IFNG, AMIGO2, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, LRRC10, ARF3, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 LALBA, LINC00938, LOC400043, FLJ41278, FIGNL2, OR6C65, OR6C68, LRP1, MIRLET7I, LYZ, MIR196A2, MIR26A2, ASIC1, MARS, MDM2, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NELL2, NFE2, CNOT2, SLC11A2, PA2G4, ATP5B, IL22, DHH, PCBP2, PLEKHA8P1, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, IL23A, HDAC7, TMBIM4, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PPP1R1A, SLC38A4, AVPR1A, SLC35E3, PRIM1, SLC48A1, PRKAG1, LMBR1L, IL26, CAND1, PRPH, MDM1, NDUFA4L2, NUP107, SMAGP, PPM1H, SRGAP1, DIP2B, CALCOCO1, NCKAP5L, PTPRB, PTPRR, NEUROD4, RAB5B, RAP1B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, SUOX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TAC3, TARBP2, SNORD59B, MIR548C, MIR615, TMBIM6, TFCP2, TSPAN8, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, PIP4K2C, DNAJC22, KMT2D, AAAS, YEATS4, HMGA2, SLC38A1, CSRNP2, INHBE, RACGAP1P, FAM186B, TMEM117, LLPH, PYM1, SARNP, SOAT2, DYRK2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ATP23, PCED1B, SCAF11, SLC16A7, HELB, MARCH9, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2, USP15) 0.4133175343058 518 0.0901285224166704 1.0063044698364 31293 0.289363097929486 3 2 1 -7.09542940518143 LTS-001 NA NA NA NA LTS-001 chr12 71551649 71833530 281882 * TSPAN8 NA 0 NA 1.793 1 NA NA NA NA NA LTS-001 chr12 71833531 72416224 582694 * c(TPH2, ZFC3H1, RAB21, TMEM19, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.313837360837058 19 0.087377784321774 1.37747328696841 935 0.308149859476347 5 4 1 -6.77075703872367 LTS-001 chr12 72416225 78224730 5808506 * c(LOC100507377, GLIPR1, KRR1, OSBPL8, TPH2, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, TRHDE-AS1, TRHDE, KCNC2, NAP1L1, ATXN7L3B, BBS10, CAPS2) 0.436497728979978 6 0.0450140718738781 0.945750960333817 1767 0.218429317380277 3 2 1 -7.12901171035968 LTS-001 chr12 78224731 78452948 228218 * NAV3 NA 0 NA 0.996064538782543 109 0.188921339030689 3 NA NA -5.76868878370593 LTS-001 chr12 78452949 78510460 57512 * NAV3 NA 0 NA 0.556 1 NA NA NA NA NA LTS-001 chr12 78510461 79685578 1175118 * c(SYT1, NAV3) 0.263 1 NA 0.843742213243402 227 0.328565783867533 2 2 0 -5.80440220827365 LTS-001 chr12 79685579 109702196 30016618 * c(TMPO-AS1, USP30-AS1, PGAM1P5, LOC100287944, MIR1252, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4699, MIR548AL, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, CMKLR1, CRY1, AMDHD1, TSPAN19, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC2, TMTC3, C12orf50, ALDH1L2, SLC5A8, NA NA NA NA NA NA NA NA NA LTS-001 DAO, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, MGAT4C, UTP20, POC1B, OTOGL, GAS2L3, LINC00485, MRPL42, CCDC59, HCFC2, HAL, APAF1, ACACB, LINC00936, TMEM119, C12orf74, IGF1, PTPRQ, C12orf42, C12orf75, ARL1, MKRN9P, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, MYF5, MYF6, PPP1R12A, NFYB, ATP2B1, NTS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 EID3, SYCP3, CHST11, PAH, PAWR, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, SSH1, PARPBP, SLC6A15, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, SYT1, MIR617, MIR618, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NUP37, GNPTAB, ACSS3, CEP290, MTERF2, ALX1, GLT8D2, USP44, SLC41A2, EEA1, LRRIQ1, METTL25, USP30, PPFIA2, GALNT4, CRADD, LIN7A, SOCS2, TMEM263, C12orf29, RASSF9, WSCD2, SART3, NUAK1, NR1H4) 0.264966813712352 283 0.073593677522089 0.783547390074836 16576 0.473394722555106 2 2 0 -6.73465529271552 LTS-001 NA NA NA NA LTS-001 chr12 109702197 109702836 640 * ACACB NA 0 NA 0.817 1 NA NA NA NA NA LTS-001 chr12 109702837 110296619 593783 * c(MIR4497, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, TRPV4, KCTD10, FAM222A, FAM222A-AS1, UBE3B) 0.232686548461436 19 0.115262781382065 0.859390040170801 1168 1.54282394458148 3 3 0 -6.7496921935929 LTS-001 chr12 110296620 110318135 21516 * GLTP NA 0 NA 0.664 1 NA NA NA NA NA LTS-001 chr12 110318136 113266279 2948144 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.253528620208306 16 0.0768982011059643 0.767702223514611 3927 0.184961736852637 2 2 0 -6.75949916575786 LTS-001 chr12 113266280 113269541 3262 * RPH3A NA 0 NA 0.81 1 NA NA NA NA NA LTS-001 chr12 113269542 120638512 7368971 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19) 0.253947567183443 91 0.0697369171016156 0.81875464319082 5239 0.233044669029215 2 2 0 -6.93338990144354 LTS-001 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 0.659 1 NA NA NA NA NA LTS-001 chr12 120638602 124387714 3749113 * c(MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, NA NA NA NA NA NA NA NA NA LTS-001 DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.252457130326424 172 0.0638277763996184 0.783051778648107 6885 0.210879442133007 2 2 0 -6.7569472839 LTS-001 NA NA NA NA LTS-001 chr12 124387715 133128296 8740582 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, EP400, DHX37, FBRSL1, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.248930891094926 96 0.0629702510867618 0.850256479588942 4041 0.261590762456935 2 2 0 -7.29340525453974 LTS-001 chr12 133128297 133144043 15747 * FBRSL1 NA 0 NA 0.637 1 NA NA NA NA NA LTS-001 chr12 133144044 133812415 668372 * c(ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, POLE, CHFR, FBRSL1, PXMP2, ANHX, ZNF10, ZNF140) 0.279011951713156 17 0.0858748234007945 0.780832610850035 2063 0.177398065447654 2 2 0 -6.74892481004376 LTS-001 chr12 133812416 133812708 293 * ANHX NA 0 NA 0.607271537733829 7 0.157903828476763 1 NA NA -5.76441229187001 LTS-001 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.306 1 NA 0.915774690815205 3 0.163439081413637 3 3 0 -5.78328875228377 LTS-001 chr13 19600476 38211764 18611289 * c(ANKRD26P3, LINC00426, LINC00421, PAN3-AS1, MIR548F5, MIR2276, MINOS1P1, SACS-AS1, LINC00327, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, MIR4499, RNU6-52P, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, LINC00424, SPATA13-AS1, STARD13-AS, FRY, USPL1, CDK8, SAP18, N4BP2L2, CDX2, POSTN, GJB6, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, EEF1AKMT1, NA NA NA NA NA NA NA NA NA LTS-001 SKA3, MICU2, SPATA13, LNX2, FGF9, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, SACS, LATS2, SNORD102, NBEA, GJA3, GJB2, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, SERTM1, LINC00547, SMAD9, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, ATP8A2, IL17D, UBL3, C1QTNF9B-AS1, MPHOSPH8, SOHLH2, PSPC1, TNFRSF19, SUPT20H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CENPJ, RNF17, RFC3, RFXAP, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, MIPEPP3, SLC7A1, BRCA2, TRPC4, TUBA3C, CCDC169, ZMYM2, MRPL57, IFT88, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, ZMYM5, TPTE2, KL, NUP58) 0.26792448168392 230 0.0758334876355539 0.784364048748354 10405 0.273849929087182 2 2 0 -6.7384739873704 LTS-001 NA NA NA NA LTS-001 chr13 38211765 38213137 1373 * TRPC4 NA 0 NA 0.768 1 NA NA NA NA NA LTS-001 chr13 38213138 40175554 1962417 * c(LINC00366, LINC00571, LHFP, STOML3, FREM2, NHLRC3, UFM1, TRPC4, PROSER1) 0.248460710544028 11 0.0470709329339533 0.853698366728801 820 0.189922391681358 2 2 0 -7.06111735540421 LTS-001 chr13 40175555 40229697 54143 * LHFP NA 0 NA 0.568 1 NA NA NA NA NA LTS-001 chr13 40229698 52492651 12262954 * c(LINC00462, TPT1-AS1, MIR320D1, MIR4305, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, NA NA NA NA NA NA NA NA NA LTS-001 ZC3H13, LRCH1, SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.269440285940622 116 0.0645471318796045 0.747240987757763 6347 0.206869865978838 2 2 0 -7.03727851307122 LTS-001 NA NA NA NA LTS-001 chr13 52492652 52506783 14132 * character(0) NA 0 NA 0.94 1 NA NA NA NA NA LTS-001 chr13 52506784 114839373 62332590 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-001 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.263244503866662 297 0.0593365985108004 0.789278430177461 14335 0.217896733652838 2 2 0 -6.84102638306608 LTS-001 NA NA NA NA LTS-001 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.273 1 NA NA NA NA NA LTS-001 chr13 114897818 115047700 149883 * c(RASA3, UPF3A, CDC16) 0.300479698245021 3 0.0240069434400411 0.647921494657376 115 0.165674378050241 2 2 0 -7.92996768693226 LTS-001 chr13 115047701 115092817 45117 * c(CHAMP1, UPF3A) NA 0 NA 0.627139346430982 111 0.098946854918588 1 NA NA -5.77123581693935 LTS-001 chr14 19434116 20295510 861395 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.494 1 NA 1.13055567928694 103 0.172213674226845 4 4 0 -5.7678883759318 LTS-001 chr14 20295511 22471922 2176412 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, NA NA NA NA NA NA NA NA NA LTS-001 METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.444305079219051 103 0.094191664570023 1.11611003277544 3644 0.986388920240047 4 2 2 -6.74082711616091 LTS-001 NA NA NA NA LTS-001 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.558 1 NA NA NA NA NA LTS-001 chr14 22475772 22970726 494955 * character(0) 0.465945954589657 22 0.0334048043308287 1.34701195431013 545 0.291305074341353 6 3 3 -7.27654344238394 LTS-001 chr14 22970727 22971188 462 * character(0) NA 0 NA 1.196 1 NA NA NA NA NA LTS-001 chr14 22971189 31029737 8058549 * c(MIR208B, MIR4307, LINC00645, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, ADCY4, FOXG1, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, LINC01551, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, NA NA NA NA NA NA NA NA NA LTS-001 PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.448384989025821 169 0.0621008607522533 1.09828014336147 7039 0.257840255397319 4 2 2 -6.89604413583047 LTS-001 NA NA NA NA LTS-001 chr14 31029738 48143920 17114183 * c(SNORD127, SLC25A21-AS1, LOC100288846, LOC100506071, LINC00871, MIR4503, PTCSC3, LINC00609, SEC23A, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, NA, C14orf28, TRAPPC6B, RPL10L, MIPOL1, LRFN5, CLEC14A, MDGA2, COCH, SPTSSA, FKBP3, FAM179B, SCFD1, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NKX2-8, IGBP1P1, LINC00639, FAM177A1, GPR33, STRN3, FOXA1, ARHGAP5, MIA2, NFKBIA, PAX9, MBIP, PNN, KLHL28, PPP2R3C, PRPF39, MIS18BP1, NA NA NA NA NA NA NA NA NA LTS-001 G2E3, EAPP, PSMA6, FANCM, SNX6, NPAS3, SRP54, SSTR1, MIR624, NKX2-1, NUBPL, FSCB, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, SLC25A21, AKAP6, KIAA0391) 0.431304473688932 116 0.104286163143 1.05789916950309 6305 0.293771614950723 4 2 2 -7.42058383930728 LTS-001 NA NA NA NA LTS-001 chr14 48143921 48144042 122 * MDGA2 NA 0 NA 0.768 1 NA NA NA NA NA LTS-001 chr14 48144043 53348540 5204498 * c(MIR548Y, LINC00648, NA, FRMD6-AS2, FERMT2, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, KLHDC2, ATP5S, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, GNPNAT1, SOS2, STYX, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.434944912829797 100 0.0685461696503705 0.974451796962848 3753 0.252223604873521 3 2 1 -6.8918127608484 LTS-001 chr14 53348541 54417300 1068760 * c(MIR5580, FERMT2, BMP4, DDHD1) NA 0 NA 0.977282715351025 206 0.421216805436462 3 NA NA -5.76515648902111 LTS-001 chr14 54417301 54417522 222 * BMP4 0.279 1 NA 0.693798280296999 5 0.173411360642837 2 2 0 -5.76447065318473 LTS-001 chr14 54417523 78189700 23772178 * c(MED6, KTN1-AS1, LOC100289511, MIR1260A, OTX2-AS1, MIR4308, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4505, MIR4708, MIR4709, MIR4706, HIF1A-AS2, CNIH1, GPHN, CDKN3, VTI1B, BATF, NPC2, AHSA1, EXOC5, CGRRF1, ACOT2, TMED10, C14orf1, WDHD1, IFT43, WDR89, L3HYPDH, SOCS4, NAA30, GPHB5, NOXRED1, JDP2, ISCA2, ACOT4, RDH12, ADAM21P1, PPP1R36, SLC38A6, C14orf37, LOC145474, PTGR2, FAM161B, LRRC74A, ISM2, FAM71D, NA NA NA NA NA NA NA NA NA LTS-001 TMEM229B, ACTN1-AS1, TMEM30B, SAMD15, DLST, EIF2S1, ERH, ESR2, ESRRB, VASH1, ATG14, ZBTB1, SNW1, PCNX1, DAAM1, SAMD4A, TTLL5, SYNE2, ANGEL1, FNTB, ZFYVE26, TTC9, FOS, FUT8, PLEKHG3, SIPA1L1, DCAF4, GCH1, PLEK2, TIMM9, MLH3, KCNH5, GMFB, PROX2, ZDHHC22, TMED8, GPX2, GSTZ1, POMT2, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, VSX2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 HEATR4, FLJ22447, PLEKHD1, LTBP2, MAX, MAP3K9, ALDH6A1, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, COQ6, FCF1, RDH11, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, SIX4, PGF, PIGH, ZFYVE1, TMEM260, PPM1A, FBXO34, C14orf105, EXD2, VRTN, PPP2R5E, SYNJ2BP, SLC39A9, FLVCR2, GPATCH2L, AP5M1, PRKCH, ACTR10, YLPM1, PSEN1, PSMA3, CCDC177, TMEM63C, PELI2, RHOJ, GALNT16, PLEKHH1, TRMT5, ZNF410, NGB, ABCD4, RBM25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RAD51B, ARID4A, RTN1, VIPAS39, SMOC1, ACOT1, ACOT6, IRF2BPL, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SYNDIG1L, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SPTB, ZFP36L1, TGFB3, CCDC175, LINC01220, ZBTB25, ZC2HC1C, BBOF1, DPF3, SGPP1, SLIRP, DNAL1, RPS6KL1, SYT16, CIPC, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, ALKBH1, EIF2B2, PAPLN, CHURC1, ELMSAN1, LIN52, NEK9, PNMA1, MAPK1IP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 AKAP5, SPTLC2, ENTPD5, RGS6, ACYP1, SUSD6, KIAA0586, DLGAP5, AREL1) 0.26644162313667 373 0.0584361679491501 0.760160861587587 20535 0.308380478928665 2 2 0 -6.83162305676637 LTS-001 NA NA NA NA LTS-001 chr14 78189701 78197424 7724 * SNW1 NA 0 NA 0.983 1 NA NA NA NA NA LTS-001 chr14 78197425 78221367 23943 * SNW1 0.132732980272029 3 0.253456768174246 1.16048595179138 53 0.351087681686812 5 5 0 -6.74001765102918 LTS-001 chr14 78221368 78234796 13429 * c(SNW1, C14orf178) 0.35 1 NA 1.28017250853177 23 0.682015589867368 5 5 0 -5.76443534253865 LTS-001 chr14 78234797 81421838 3187042 * c(DIO2-AS1, CEP128, DIO2, C14orf178, ADCK1, NRXN3) 0.453332545884209 15 0.0427480993729546 1.03920285934756 665 0.257851661910056 4 2 2 -7.11641456176638 LTS-001 chr14 81421839 83157152 1735314 * c(CEP128, GTF2A1, SEL1L, SNORA79, TSHR, STON2) 0.44382607423279 11 0.0297538385606111 1.247115932485 628 0.323417646382363 4 2 2 -6.86386550723645 LTS-001 chr14 83157153 83157717 565 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-001 chr14 83157718 88654361 5496644 * c(LINC00911, FLRT2, GALC, LOC283585, LINC01146, KCNK10, GPR65) 0.405801406659302 43 0.0649842045719867 0.987655023230428 533 0.284477954774725 3 2 1 -6.76308693104763 LTS-001 chr14 88654362 92622941 3968580 * c(SNORA11B, FBLN5, PTPN21, FOXN3, TTC8, TC2N, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, KCNK13, PSMC1, CATSPERB, ZC3H14, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11) 0.381070495565807 65 0.0854314980869738 0.872616819005161 3386 0.22745161511576 3 2 1 -7.18175212895869 LTS-001 chr14 92622942 92624008 1067 * CPSF2 NA 0 NA 0.99 1 NA NA NA NA NA LTS-001 chr14 92624009 106346791 13722783 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, NA NA NA NA NA NA NA NA NA LTS-001 DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.372598137074497 317 0.0964266215287881 0.924016384839567 13898 0.267562693234914 3 2 1 -6.97435256117427 LTS-001 NA NA NA NA LTS-001 chr14 106346792 106346795 4 * character(0) 0.37 1 NA 0.7 1 NA NA NA NA NA LTS-001 chr14 106346796 107178965 832170 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.378940417850486 45 0.0585663570816743 0.852201415835243 445 0.273171489338303 3 2 1 -6.90825464438745 LTS-001 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.75215741173329 51 0.114808754875569 2 NA NA -5.7706835014321 LTS-001 chr15 20169987 20445987 276001 * character(0) 0.309 1 NA 1.05543937559242 23 0.263282366942952 4 4 0 -5.78077723825787 LTS-001 chr15 20445988 22383551 1937564 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.295584393637627 30 0.11400928072729 1.11567964460282 218 0.426768930989936 4 3 1 -6.8264688814053 LTS-001 chr15 22383552 22413780 30229 * c(OR4N4, OR4N3P, LOC727924) NA 0 NA 0.807 1 NA NA NA NA NA LTS-001 chr15 22413781 34130408 11716628 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-001 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, WHAMMP1, LOC100288637, LOC100289656, MIR4508, MIR4715, TMCO5B, LOC100996255, CHRNA7, TUBGCP5, NIPA1, PWAR1, OTUD7A, FAN1, CYFIP1, FAM189A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NPAP1, GABRA5, GABRB3, GABRG3, DKFZP434L187, GREM1, LOC283683, LOC283710, GOLGA6L1, GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, FMN1, PWAR4, PWARSN, IPW, GOLGA8EP, OR4N3P, HERC2P10, HERC2P2, MIR211, TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, KLF13, MAGEL2, MTMR10, NSMCE3, ATP10A, RYR3, SCG5, PDCD6IPP2, REREP3, GOLGA8S, GOLGA8T, SNRPN, TJP1, SNORD116-19, GOLGA8O, GOLGA6L7P, UBE3A, MKRN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF, CHRFAM7A, ARHGAP11B, ARHGAP11A) 0.263966727413561 133 0.0758530900731054 0.805434271079252 5423 0.309273865248722 2 2 0 -6.80769682623351 LTS-001 NA NA NA NA LTS-001 chr15 34130409 41865232 7734824 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, GOLGA8A, RTF1, LPCAT4, NUTM1, RPAP1, GCHFR, RPUSD2, FAM98B, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, PLCB2, DLL4, INO80, PPP1R14D, ZNF770, RMDN3, DNAJC17, NA NA NA NA NA NA NA NA NA LTS-001 NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, C15orf41, ZFYVE19, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR, SLC12A6) 0.261425143196609 171 0.0635861960991953 0.769560327345496 6715 0.204474865479002 2 2 0 -6.75515428342901 LTS-001 NA NA NA NA LTS-001 chr15 41865233 41871537 6305 * TYRO3 0.339 1 NA 1.27409611291367 48 0.496037228623872 5 5 0 -5.76443843476804 LTS-001 chr15 41871538 41961082 89545 * MGA NA 0 NA 0.856 1 NA NA NA NA NA LTS-001 chr15 41961083 42459084 498002 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, MIR626, JMJD7-PLA2G4B) 0.234814693004197 48 0.0430975925344967 0.829627208808101 1575 0.202424089103291 3 3 0 -7.02057406408766 LTS-001 chr15 42459085 42459617 533 * VPS39 NA 0 NA 0.706 1 NA NA NA NA NA LTS-001 chr15 42459618 45060004 2600387 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, VPS39, CCNDBP1, LRRC57, HYPK, GANC, TMEM87A, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, EIF3J-AS1, MIR627, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, SNAP23, TGM5, PPIP5K1, LCMT2) 0.271117743903277 30 0.0597412428055696 0.77357206280831 4878 0.180978940619687 2 2 0 -6.74256156404804 LTS-001 chr15 45060005 45060014 10 * TRIM69 0.236 1 NA 3.615 1 NA NA NA NA NA LTS-001 chr15 45060015 45139695 79681 * TRIM69 NA 0 NA 1.73254731666319 41 2.05759013849911 7 NA NA -5.76441510766148 LTS-001 chr15 45139696 45142487 2792 * character(0) NA 0 NA 0.558 1 NA NA NA NA NA LTS-001 chr15 45142488 48787470 3644983 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.249009989437758 23 0.0717451297048353 0.800107536771963 2467 0.214557888786578 2 2 0 -6.79329087032505 LTS-001 chr15 48787471 51250820 2463350 * c(GABPB1-AS1, DCAF13P3, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.266758442865137 25 0.0389162348298667 0.733331534762045 2270 0.181600649355221 2 2 0 -6.90035065585161 LTS-001 chr15 51250821 51795232 544412 * c(MIR4713, CYP19A1, DMXL2, AP4E1, GLDN, TNFAIP8L3) 0.236596762014546 9 0.0295230606663861 0.837851364524742 618 0.226434768694148 3 3 0 -7.17004611760698 LTS-001 chr15 51795233 51799329 4097 * DMXL2 NA 0 NA 0.637 1 NA NA NA NA NA LTS-001 chr15 51799330 56383254 4583925 * c(LOC100129973, BCL2L10, MIR1266, DYX1C1-CCPG1, GNB5, ARPP19, LEO1, C15orf65, DYX1C1, DMXL2, LYSMD2, WDR72, PYGO1, PRTG, SCG3, TMOD3, TMOD2, ONECUT1, UNC13C, MYO5A, NEDD4, RSL24D1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.259881745615135 64 0.0612994839791585 0.761699781413692 3176 0.199808267758653 2 2 0 -6.77595674846729 LTS-001 chr15 56383255 56395890 12636 * RFX7 0.152036003200127 2 0.0332340187157677 1.22812419277254 135 0.221046480883297 5 5 0 -6.7404033411446 LTS-001 chr15 56395891 56434953 39063 * RFX7 NA 0 NA 0.816 1 NA NA NA NA NA LTS-001 chr15 56434954 57746001 1311048 * c(LOC145783, LINC00926, TEX9, ZNF280D, MNS1, RFX7, TCF12, CGNL1) 0.277234116208896 6 0.046055039536045 0.763134420885312 610 0.175460944225962 2 2 0 -6.78715144614486 LTS-001 chr15 57746002 57753832 7831 * CGNL1 NA 0 NA 0.999 1 NA NA NA NA NA LTS-001 chr15 57753833 58009785 255953 * c(MYZAP, GCOM1, POLR2M, CGNL1) 0.212264942558979 5 0.046858297024113 1.15650400123715 328 0.249660966633227 3 3 0 -6.81571845566042 LTS-001 chr15 58009786 58027636 17851 * character(0) NA 0 NA 0.671 1 NA NA NA NA NA LTS-001 chr15 58027637 67664610 9636974 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, MIR4511, PDCD7, ADAM10, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, MGC15885, LCTL, ZNF609, DAPK2, FOXB1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, LIPC, MIR190A, SMAD3, SMAD6, MYO1E, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, IGDCC4, NA NA NA NA NA NA NA NA NA LTS-001 SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, BNIP2, SNX1, HSP90AB4P, SCARNA14, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.27650773988703 149 0.0607453463054489 0.755897941525684 8815 0.193415916522254 2 2 0 -6.9033076677956 LTS-001 NA NA NA NA LTS-001 chr15 67664611 86290712 18626102 * c(NR2E3, DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, MIR4313, NA, UBE2Q2L, IQCH-AS1, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, FEM1B, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, SENP8, HIGD2B, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, DRAIC, C15orf61, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, NA NA NA NA NA NA NA NA NA LTS-001 CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, ETFA, FAH, ITGA11, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, HEXA, TMEM202, LOC338963, IDH3A, GOLGA6A, TMC3, IL16, IREB2, ISLR, GOLGA6L5P, C15orf59, GOLGA2P7, UBE2Q2P1, SKOR1, ANKRD34C, ADAMTS7P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ST20, LOXL1, MIR184, MAN2C1, LINC00593, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, MYO9A, NEO1, NMB, SCAPER, HDGFRP3, PDE8A, PKM, BTBD1, TM6SF1, PML, ZFAND6, SCAND2P, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZSCAN2, UACA, IMP3, LARP6, DNAJA4, GOLGA6B, MAP2K5, PSMA4, C15orf39, THAP10, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, CELF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RPLP1, STRA6, LOC642423, GOLGA6L4, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, IQCH, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, TLE3, LOC729739, ANKRD34C-AS1, TYRO3P, NOX5, EFL1, NEIL1, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, ANP32A, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PIAS1, PSTPIP1, LOC91450, SLC28A1, CALML4, UBE2Q2, COX5A, STOML1, HOMER2, KIF23, ZNF592, ARNT2) 0.2610334046431 312 0.0698854119501795 0.788335372681851 15673 0.31175713716985 2 2 0 -6.747850518812 LTS-001 NA NA NA NA LTS-001 chr15 86290713 89424870 3134158 * c(MIR1276, MIR1179, MIR3529, AKAP13, AGBL1, HAPLN3, LINC00052, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, KLHL25, AEN, MRPS11, AGBL1-AS1) 0.254988227988837 53 0.0483920026618608 0.848352387989387 1245 0.232064411980806 2 2 0 -6.99529874973897 LTS-001 chr15 89424871 91811749 2386879 * c(PRC1-AS1, C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, FES, GABARAPL3, MIR9-3HG, VPS33B, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, MIR9-3, MAN2A2, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MESP1, UNC45A, WDR93, RLBP1, BLM, CRTC3, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.263128956247574 84 0.0662329498297034 0.782192575921685 3688 0.194149506788513 2 2 0 -6.73381076651378 LTS-001 chr15 91811750 91836373 24624 * SV2B 0.224 1 NA 0.826037706034966 31 0.311843426386777 2 2 0 -5.76490900845797 LTS-001 chr15 91836374 92397690 561317 * c(SLCO3A1, SV2B) 0.182671052193584 2 0.0162634559672906 0.781525699018705 183 0.186011879846272 4 4 0 -7.91525317087922 LTS-001 chr15 92397691 92432341 34651 * SLCO3A1 NA 0 NA 1.148 1 NA NA NA NA NA LTS-001 chr15 92432342 102516492 10084151 * c(FAM138E, LINC00930, MIR1469, MIR3175, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, OR4F4, SLCO3A1, FAM169B, IGF1R, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, PCSK6, LINS1, MCTP2, SELENOS, RGMA, NR2F2-AS1, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, NA NA NA NA NA NA NA NA NA LTS-001 LRRK1, TM2D3, ST8SIA2, ARRDC4, LINC00923) 0.180993105699262 146 0.0452961352406291 1.15408816755757 4300 0.715901076784371 4 4 0 -6.73365862821475 LTS-001 NA NA NA NA LTS-001 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.018 1 NA NA NA NA NA LTS-001 chr16 81704 96405 14702 * character(0) 0.419 1 NA 0.802250800027551 3 0.13098473193468 2 2 0 -5.7648156890928 LTS-001 chr16 96406 334732 238327 * c(HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, POLR3K, LUC7L, RHBDF1, PDIA2, SNRNP25, NPRL3, FAM234A, RGS11) 0.448006443289027 19 0.050243035070539 0.823129932453452 721 0.190650407191716 2 1 1 -6.78898485617465 LTS-001 chr16 334733 334748 16 * c(LUC7L, PDIA2) NA 0 NA 0.949 1 NA NA NA NA NA LTS-001 chr16 334749 2672816 2338068 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, SOX8, JMJD8, IGFALS, NA NA NA NA NA NA NA NA NA LTS-001 PRR25, C1QTNF8, PTX4, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, CEMP1, METRN, TMEM204, C16orf59, FAHD1, AXIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.423784620293032 280 0.0682528397065514 0.889651891992557 7563 0.332722146064146 3 2 1 -6.884426964728 LTS-001 NA NA NA NA LTS-001 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.452 1 NA NA NA NA NA LTS-001 chr16 2692191 2747830 55640 * c(ERVK13-1, KCTD5, FLJ42627) 0.454058207320333 4 0.0454422710700071 0.632587523851768 82 0.741828974252184 2 1 1 -6.84750149219221 LTS-001 chr16 2747831 2747857 27 * KCTD5 0.388 1 NA 1.174 1 NA NA NA NA NA LTS-001 chr16 2747858 6533549 3785692 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, EEF2KMT, NLRC3, CLUAP1, MGRN1, SRRM2, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, MEFV, SMIM22, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, KCTD5, RBFOX1, NA NA NA NA NA NA NA NA NA LTS-001 ZSCAN32, PPL, HCFC1R1, ALG1, NMRAL1, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, SEC14L5) 0.435504600506716 140 0.0617107311340722 0.874895527279275 5005 0.28493342485275 2 1 1 -7.08086560840944 LTS-001 NA NA NA NA LTS-001 chr16 6533550 6704555 171006 * RBFOX1 0.044 1 NA 0.898439806425949 3 0.427754992178155 3 3 0 -5.76713660589207 LTS-001 chr16 6704556 8740611 2036056 * c(TMEM114, RBFOX1, METTL22) 0.44175577950332 2 0.000707106781186548 0.968979695202769 247 0.219949422881229 4 2 2 -16.8446956516271 LTS-001 chr16 8740612 8807660 67049 * ABAT NA 0 NA 0.608 1 NA NA NA NA NA LTS-001 chr16 8807661 8996377 188717 * c(ABAT, CARHSP1, TMEM186, PMM2, USP7) 0.330919431537918 30 0.0758121468446541 0.693074331141228 413 0.224347464144765 1 1 0 -6.80630198077932 LTS-001 chr16 8996378 9186869 190492 * c(C16orf72, USP7) NA 0 NA 0.681852660305313 117 0.199917281007684 1 NA NA -5.81484314532504 LTS-001 chr16 9186870 9196873 10004 * C16orf72 NA 0 NA 0.948 1 NA NA NA NA NA LTS-001 chr16 9196874 9211295 14422 * C16orf72 0.491 1 NA 1.00983663451455 21 0.127248931139678 3 3 0 -5.76559730316094 LTS-001 chr16 9211296 10274372 1063077 * c(MIR548X, GRIN2A, C16orf72) 0.435421714025007 9 0.052924474489597 1.13527318921861 406 0.308967677555251 4 2 2 -6.73398391534045 LTS-001 chr16 10274373 10524418 250046 * c(GRIN2A, ATF7IP2) NA 0 NA 1.429 1 NA NA NA NA NA LTS-001 chr16 10524419 14958570 4434152 * c(MIR365A, MIR4718, RMI2, TEKT5, EMP2, ERCC4, CLEC16A, NOMO1, RSL1D1, DEXI, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, PARN, TXNDC11, BFAR, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, ATF7IP2, SNN, PLA2G10, SOCS1, SNX29, LITAF) 0.39974188848519 47 0.114177519735502 1.29708144079546 2254 0.381879127927375 5 3 2 -6.76162543381614 LTS-001 chr16 14958571 14962340 3770 * NOMO1 NA 0 NA 0.931 1 NA NA NA NA NA LTS-001 chr16 14962341 15125832 163492 * c(PDXDC1, NOMO1, NPIPA1) 0.421751083819694 7 0.0446643567277618 0.895360413840711 124 0.33461398028356 2 1 1 -6.79631907284542 LTS-001 chr16 15125833 15126694 862 * PDXDC1 NA 0 NA 1.575 1 NA NA NA NA NA LTS-001 chr16 15126695 24988731 9862037 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, ITPRIPL2, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, MPV17L, PDZD9, ANKS4B, TNRC6A, GP2, NOMO2, EEF2K, PKD1P1, ACSM2B, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, NOMO3, ABCC1, MYH11, NDUFAB1, NA NA NA NA NA NA NA NA NA LTS-001 METTL9, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST2) 0.408444671479516 137 0.0933261880302778 1.32597353969712 8075 0.34365332702374 5 3 2 -6.74128481106988 LTS-001 NA NA NA NA LTS-001 chr16 24988732 28608392 3619661 * c(LCMT1-AS2, SGF29, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, APOBR, SULT1A2, KDM8, HS3ST4) 0.413653348877208 23 0.134151115310796 1.05336811602342 1609 0.248437854420574 4 2 2 -6.99034124722483 LTS-001 chr16 28608393 28621415 13023 * SULT1A1 NA 0 NA 0.524767636461366 43 0.150687927870014 1 NA NA -5.77008636444826 LTS-001 chr16 28621416 28631284 9869 * SULT1A1 NA 0 NA 0.823 1 NA NA NA NA NA LTS-001 chr16 28631285 29677243 1045959 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, SMG1P2, ATP2A1, SLX1A, BOLA2, LOC606724, LOC613038, RRN3P2, SPN, SULT1A1, SULT1A3, TUFM, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19) 0.451331935805777 2 0.0190918830920368 1.06185479386912 986 0.223099442810136 4 2 2 -7.25171365927063 LTS-001 chr16 29677244 29754325 77082 * c(SLX1B-SULT1A4, QPRT, C16orf54, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN) 0 2 0 1.17060088641789 105 0.345561241212859 0 0 0 -Inf LTS-001 chr16 29754326 29826365 72040 * c(SLX1B-SULT1A4, PRRT2, C16orf54, KIF22, MAZ, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, ZG16) 0.479 1 NA 1.19868787953291 224 0.302406145899839 4 4 0 -5.7653411819982 LTS-001 chr16 29826366 32013503 2187138 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, TRIM72, NA NA NA NA NA NA NA NA NA LTS-001 AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZNF747, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.42945585808009 105 0.086720497511515 1.20502350462265 5418 0.274438678916061 4 2 2 -6.77752880957483 LTS-001 NA NA NA NA LTS-001 chr16 32013504 32486808 473305 * c(LOC390705, NA, TP53TG3D) NA 0 NA 1.742 1 NA NA NA NA NA LTS-001 chr16 32486809 32896688 409880 * c(SLC6A10P, LOC390705) 0.437623709315696 3 0.0530188645672462 1.65347523471367 61 0.799947443970386 6 3 3 -6.73846378838407 LTS-001 chr16 32896689 33380000 483312 * LOC390705 0.278 1 NA 1.77545655175281 17 0.740784897730699 7 7 0 -5.76550154513774 LTS-001 chr16 33380001 33961402 581402 * LINC00273 0.296151185238586 24 0.0972729239774894 1.47194754142377 146 0.390706252773797 5 4 1 -6.75699578653624 LTS-001 chr16 33961403 33961448 46 * LINC00273 0.224401381066056 4 0.0157770930993851 1.00771642099517 6 0.115341955361727 16 13 3 -6.74328514344435 LTS-001 chr16 33961449 33961453 5 * LINC00273 0.391 1 NA 0.474 1 NA NA NA NA NA LTS-001 chr16 33961454 33965677 4224 * LINC00273 0.327637917539924 61 0.0936617708694661 0.701087287209545 95 0.380756636939329 4 3 1 -6.7472499791429 LTS-001 chr16 33965678 34256798 291121 * character(0) NA 0 NA 1.478 1 NA NA NA NA NA LTS-001 chr16 34256799 34682041 425243 * c(LINC01566, UBE2MP1) 0.454429551236981 3 0.0190787840283389 1.27842468239157 107 0.345888361719071 4 2 2 -7.363508901527 LTS-001 chr16 34682042 34682380 339 * character(0) NA 0 NA 1.27272093631404 7 0.13026950087086 5 NA NA -5.76443325652539 LTS-001 chr16 46508169 46508314 146 * ANKRD26P1 0.474 1 NA 1.14507901727156 3 0.160593690203985 4 4 0 -5.76441014095888 LTS-001 chr16 46508315 48249113 1740799 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, GPT2, ABCC11, MYLK3, ABCC12) 0.44417469350429 10 0.0346841302166984 1.22884893454312 1427 0.264242761204072 4 2 2 -6.85255213011481 LTS-001 chr16 48249114 48596347 347234 * c(LOC100507577, MIR548AE2, SIAH1, LONP2, ABCC11, N4BP1) NA 0 NA 1.18203583335421 319 0.25046973967939 4 NA NA -5.76747708424419 LTS-001 chr16 48596348 48643678 47331 * N4BP1 NA 0 NA 0.889 1 NA NA NA NA NA LTS-001 chr16 48643679 49672520 1028842 * c(C16orf78, ZNF423, CBLN1, N4BP1) 0.264 1 NA 0.814740353155151 171 0.174636436145844 2 2 0 -5.80253039375238 LTS-001 chr16 49672521 62055551 12383031 * c(MIR3935, LINC00919, CDH8, IRX5, KATNB1, CES1, CETP, NUDT21, ADCY7, SNX20, CNGB1, CSNK2A2, CYLD, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, ARL2BP, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, GOT2, LOC283856, CCDC113, CFAP20, BRD7, MT1DP, TEPP, KIFC3, C16orf97, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NA NA NA NA NA NA NA NA NA LTS-001 PLLP, CES1P1, POLR2C, LPCAT2, HEATR3, SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, CHD9, NLRC5, DRC7, CAPNS2, MT4, NKD1, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.276432485064455 145 0.0777723708438072 0.784054839154868 7262 0.200969976619117 2 2 0 -6.75078286281138 LTS-001 NA NA NA NA LTS-001 chr16 64294499 66801435 2506937 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, TERB1, LINC00922, CKLF, TK2) 0.455522170270504 10 0.0519726423761151 0.423318769724534 835 0.101506873134707 0 0 0 -6.91252288818618 LTS-001 chr16 66801436 66801979 544 * TERB1 NA 0 NA 0.837 1 NA NA NA NA NA LTS-001 chr16 66801980 70796515 3994536 * c(CDH3, SNORD111B, VAC14-AS1, MIR1538, MIR1972-1, SMG1P7, LOC100506083, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, EXOSC6, NRN1L, ZFP90, CARMIL2, KCTD19, IL34, TMED6, CTRL, AARS, NQO1, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, NA NA NA NA NA NA NA NA NA LTS-001 PARD6A, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CDH1) 0.275757852390114 79 0.0748502367112834 0.789969433319184 7596 0.347641489992275 2 2 0 -6.7485246365457 LTS-001 NA NA NA NA LTS-001 chr16 70796516 70871792 75277 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.793101559310606 129 0.191139854029581 2 NA NA -5.76475148847669 LTS-001 chr16 70871793 70874035 2243 * HYDIN NA 0 NA 1.006 1 NA NA NA NA NA LTS-001 chr16 70874036 70884524 10489 * HYDIN 0.467 1 NA 0.972810914081542 13 0.172616552969217 3 3 0 -5.76443035483196 LTS-001 chr16 70884525 71165509 280985 * HYDIN 0.434844115683183 75 0.0472312425230405 0.938082629388563 487 0.202512135892307 2 1 1 -6.86989683372016 LTS-001 chr16 71165510 71165560 51 * HYDIN 0.099 1 NA 1.44677953881718 3 0.868797636583649 6 6 0 -5.76441021487279 LTS-001 chr16 71165561 71167262 1702 * HYDIN 0.353996891319966 7 0.0906676295467078 0.988992004988147 43 0.281266741842055 1 1 0 -6.74112096106389 LTS-001 chr16 71167263 71171065 3803 * HYDIN NA 0 NA 0.768 1 NA NA NA NA NA LTS-001 chr16 71171066 77769442 6598377 * c(SYCE1L, SNORA70D, LINC01568, MIR4719, CHST4, CFDP1, GABARAPL2, TMEM170A, CTRB1, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ADAT1, CHST5, GLG1, HCCAT5, LOC283922, NUDT7, HP, HPR, ATXN1L, PKD1L3, KARS, CHST6, CTRB2, ZFHX3, CLEC18B, TERF2IP, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, PMFBP1, ZNRF1, CNTNAP4, MARVELD3, BCAR1, NA NA NA NA NA NA NA NA NA LTS-001 DHX38, IST1) 0.273615651119424 112 0.061106398652203 0.78755226093357 4263 0.198417600305571 2 2 0 -6.75411814679586 LTS-001 NA NA NA NA LTS-001 chr16 77769443 77769668 226 * NUDT7 NA 0 NA 0.983 1 NA NA NA NA NA LTS-001 chr16 77769669 78142497 372829 * c(CLEC3A, NUDT7, WWOX, VAT1L) 0.18516707705323 8 0.0205756444092802 1.20169219467771 131 0.297956037616826 4 4 0 -6.77175851904719 LTS-001 chr16 78142498 78143619 1122 * WWOX NA 0 NA 0.71 1 NA NA NA NA NA LTS-001 chr16 78143620 90161231 12017612 * c(VPS9D1-AS1, LOC100129617, URAHP, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR5093, MIR5189, CDH13, CDH15, MPHOSPH6, EMC8, TUBB3, PRDM7, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, NA NA NA NA NA NA NA NA NA LTS-001 MLYCD, GALNS, GAS8, GCSH, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, CENPN, CMC2, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, CMIP, GAN, SLC7A5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.262127208454165 278 0.0648370590012449 0.777228206815809 8662 0.340292184045644 2 2 0 -6.73503243723664 LTS-001 NA NA NA NA LTS-001 chr16 90161232 90161242 11 * character(0) NA 0 NA 0.874 1 NA NA NA NA NA LTS-001 chr17 6004 6115 112 * DOC2B 0.339 1 NA 0.484954183402363 3 0.259669020100589 0 0 0 -5.76443529352642 LTS-001 chr17 6116 15466891 15460776 * c(MIR744, LOC100128288, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, NA NA NA NA NA NA NA NA NA LTS-001 USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, COX10, CLDN7, CRK, DNAH2, RTN4RL1, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF18, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.27121879925803 465 0.0624939056724692 0.796207473471328 19540 0.200080255514961 2 2 0 -6.83499695221154 LTS-001 NA NA NA NA LTS-001 chr17 15466892 15526862 59971 * c(TVP23C-CDRT4, TRIM16, TVP23C, CDRT1) 0.366778258212569 5 0.0886978015511095 0.605536861447941 186 0.248660836648336 1 1 0 -6.76626610440108 LTS-001 chr17 15526863 15526878 16 * TRIM16 NA 0 NA 0.927 1 NA NA NA NA NA LTS-001 chr17 15526879 16638086 1111208 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.218262641176556 42 0.0791855060412895 0.817823179461246 1271 0.741284158476388 3 3 0 -6.76666454579553 LTS-001 chr17 16638087 16638566 480 * c(USP32P1, CCDC144A) NA 0 NA 1.088 1 NA NA NA NA NA LTS-001 chr17 16638567 16734803 96237 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) NA 0 NA 1.3834088715656 41 0.478572071948187 5 NA NA -5.76480161527428 LTS-001 chr17 16734804 16796652 61849 * KRT16P2 NA 0 NA 0.697 1 NA NA NA NA NA LTS-001 chr17 16796653 18315385 1518733 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.265741287815884 88 0.0577823493422238 0.805153529254286 2743 0.199534468727684 2 2 0 -6.75603292494721 LTS-001 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.002 1 NA NA NA NA NA LTS-001 chr17 18378811 18456633 77823 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.0978156192702178 62 0.144096603158356 0 NA NA -8.58128469077637 LTS-001 chr17 18456634 20219508 1762875 * c(MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, TBC1D28, B9D1, CCDC144B, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, SNORA59A, ZNF286B, RNF112, SPECC1, ULK2) 0.287409771950946 27 0.0784938526273548 0.80374109747707 2081 0.235734295237369 2 2 0 -6.79846309357857 LTS-001 chr17 20219509 20221050 1542 * character(0) 0.462 1 NA 0.860646471865039 19 0.361044812627389 2 2 0 -5.76447874261527 LTS-001 chr17 20221051 22066835 1845785 * c(LOC100287072, MTRNR2L1, USP22, CDRT15L2, NATD1, DHRS7B, FAM27E5, FLJ36000, LGALS9B, CCDC144NL, C17orf51, CCDC144CP, KCNJ12, MAP2K3, KRT16P3, TMEM11) 0.362886719751514 130 0.0875531684447273 0.811509253470228 913 0.223775164021779 2 1 1 -7.14178881663855 LTS-001 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-001 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.262 1 NA 0.84010724933012 17 0.178352921775569 2 2 0 -5.76540160374443 LTS-001 chr17 25630389 27975077 2344689 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-001 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.265180699904824 56 0.0531804542504642 0.800908424955115 4193 0.199011199557224 2 2 0 -6.75771358314129 LTS-001 NA NA NA NA LTS-001 chr17 27975078 27975182 105 * SSH2 NA 0 NA 0.699 1 NA NA NA NA NA LTS-001 chr17 27975183 34432660 6457478 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-001 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.254697967706034 90 0.0924989219493814 0.762123453899649 5985 0.217201411378636 2 2 0 -6.784472107959 LTS-001 NA NA NA NA LTS-001 chr17 34432661 34432665 5 * CCL4 NA 0 NA 0.666 1 NA NA NA NA NA LTS-001 chr17 34432666 34625714 193049 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.41173424385851 39 0.300978613037659 0 NA NA -5.76443139358549 LTS-001 chr17 34625715 34640930 15216 * c(CCL4L1, CCL3L3, CCL3L1, NA) NA 0 NA 1.587 1 NA NA NA NA NA LTS-001 chr17 34640931 36214044 1573114 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.244785879938175 8 0.0509732072479539 0.756793923749609 1538 0.179544199568419 2 2 0 -6.85279552555502 LTS-001 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.413 1 NA NA NA NA NA LTS-001 chr17 36214814 36385038 170225 * c(YWHAEP7, LOC440434) 0.284085411291946 3 0.0919293206762674 0.478102741802449 70 0.150604351200137 1 1 0 -7.20602127454809 LTS-001 chr17 36385039 36398156 13118 * LOC440434 NA 0 NA 0.828 1 NA NA NA NA NA LTS-001 chr17 36398157 39346984 2948828 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, NA NA NA NA NA NA NA NA NA LTS-001 PNMT, KRT20, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, KRTAP4-11, SMARCE1, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, KRTAP4-4, TNS4, FBXL20, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ORMDL3, NR1D1, MED24, CDC6) 0.261272530956101 143 0.0574149467946619 0.783962527228695 6182 0.208386978303739 2 2 0 -6.73661716572728 LTS-001 NA NA NA NA LTS-001 chr17 39346985 39383396 36412 * KRTAP9-2 NA 0 NA 1.35 1 NA NA NA NA NA LTS-001 chr17 39383397 39432306 48910 * c(KRTAP9-7, KRTAP9-6, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.163752976076173 14 0.104248013658047 1.22685571347132 73 0.753992146108097 5 5 0 -6.73715361415274 LTS-001 chr17 39432307 39432417 111 * KRTAP9-7 NA 0 NA 0.827 1 NA NA NA NA NA LTS-001 chr17 39432418 42396051 2963634 * c(LINC00910, HDAC5, RAMP2-AS1, MIR2117, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP29-1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, RUNDC3A, TMEM106A, NT5C3B, LSM12, CNTD1, CNP, CD300LG, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, KCNH4, FAM215A, GAST, G6PC, KAT2A, TUBG2, CCR10, C17orf105, KRT42P, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, AOC2, KLHL10, NA NA NA NA NA NA NA NA NA LTS-001 HSD17B1, ASB16-AS1, IFI35, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, KRT33B, KRT34, KRT35, NBR1, MEOX1, MPP2, MPP3, NAGLU, ACLY, SOST, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, FKBP10, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, C17orf53, TMUB2, DHX58, PLEKHH3, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, G6PC3, ASB16, HSPB9) 0.276619395479244 126 0.0656120744791713 0.797052467142297 6423 0.207815488647039 2 2 0 -6.77084195886185 LTS-001 NA NA NA NA LTS-001 chr17 42396052 42396994 943 * SLC25A39 NA 0 NA 1.363 1 NA NA NA NA NA LTS-001 chr17 42396995 42433905 36911 * c(FAM171A2, GRN, SLC25A39) 0.173200245027647 3 0.0199749843554382 1.21470414303228 184 0.366563808603761 10 9 1 -6.79501025298211 LTS-001 chr17 42433906 42436868 2963 * FAM171A2 NA 0 NA 0.839 1 NA NA NA NA NA LTS-001 chr17 42436869 44364336 1927468 * c(MAP3K14-AS1, GJC1, HEXIM1, C1QL1, PLCD3, SPATA32, HEXIM2, CCDC43, KIF18B, GPATCH8, FZD2, GFAP, FAM171A2, MEIOC, ITGA2B, CCDC103, ADAM11, NMT1, HIGD1B, FMNL1, ACBD4, DCAKD, DBF4B, MAP3K14, EFTUD2) 0.27963642337112 15 0.04888713921833 0.802202547439289 2381 0.219693927560807 2 2 0 -6.80493829609433 LTS-001 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.007 1 NA NA NA NA NA LTS-001 chr17 44408492 44782233 373742 * character(0) NA 0 NA 0.362785657172922 45 0.278063282165929 0 NA NA -5.81350674426925 LTS-001 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.955 1 NA NA NA NA NA LTS-001 chr17 44788332 47122549 2334218 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, CALCOCO2, HOXB13, IGF2BP1, CBX1, SNF8, OSBPL7, EFCAB13, MRPL10, GIP, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, COPZ2, ATP5G1, PNPO, UBE2Z, MRPL45P2, SP2, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, NA NA NA NA NA NA NA NA NA LTS-001 CDC27) 0.269444840709926 44 0.0693933696133875 0.753886887337559 2970 0.30034231419115 2 2 0 -6.75345678706036 LTS-001 NA NA NA NA LTS-001 chr17 47122550 47123213 664 * IGF2BP1 NA 0 NA 1.178 1 NA NA NA NA NA LTS-001 chr17 47123214 48940865 1817652 * c(TOB1, SLC35B1, IGF2BP1, CHAD, KAT7, NXPH3, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GNGT2, LOC284080, ITGA3, HILS1, NGFR, ABI3, MRPL27, PDK2, LUC7L3, PHB, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, ANKRD40) 0.269563411658111 88 0.0623506439035982 0.800357507317414 3712 0.238360131845833 2 2 0 -6.74888674991411 LTS-001 chr17 48940866 49256683 315818 * c(TOB1, TOB1-AS1, NME1, NME2, MBTD1, NME1-NME2, SPAG9) 0.158142348761283 14 0.0493365321703239 1.09778299164725 398 0.262609206487173 5 5 0 -6.83425930125311 LTS-001 chr17 49256684 49256694 11 * MBTD1 0.247 1 NA 0.352 1 NA NA NA NA NA LTS-001 chr17 49256695 61916049 12659355 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, DCAF7, APPBP2, TLK2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, COX11, DYNLL2, EFCAB3, CYB561, ANKFN1, MARCH10, ACE, PPM1E, MMD, MTVR2, STXBP4, TANC2, OR4D1, C17orf47, GDPD1, HLF, METTL2A, C17orf67, NACA2, SKA2, RNF126P1, YPEL2, C17orf82, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, TRIM37, UTP18, RNFT1, TUBD1, NA NA NA NA NA NA NA NA NA LTS-001 TACO1, MRPS23, PTRH2, SEPT4, MBTD1, BCAS3, RNF43, MKS1, SMG8, TMEM100, MSX2P1, PRR11, TEX14, CA10, CCDC47, PSMC5, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SUPT4H1, TBX2, LOC729683, CA4, MIR454, TRIM25, VEZF1, DHX40, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, BRIP1, KIF2B, USP32, PPM1D, DGKE, MTMR4, STRADA, NOG, TSPOAP1, TBX4, MRC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MED13) 0.268366398678534 100 0.0518081727884392 0.768870534726605 6694 0.195172544579848 2 2 0 -6.77665823034824 LTS-001 NA NA NA NA LTS-001 chr17 61916050 61949389 33340 * c(CSH2, TCAM1P, SMARCD2) NA 0 NA 0.223 1 NA NA NA NA NA LTS-001 chr17 61949390 61974016 24627 * c(CSH1, CSH2, GH2) NA 0 NA 0.196988760213904 55 0.0733536565043551 0 NA NA -6.98682459228738 LTS-001 chr17 61974017 61986098 12082 * CSH1 NA 0 NA 0.624 1 NA NA NA NA NA LTS-001 chr17 61986099 65574289 3588191 * c(MIR3064, MIR5047, GNA13, POLG2, CSHL1, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, PITPNC1, GH1, CACNG5, CACNG4, MILR1, ICAM2, APOH, LRRC37A3, PLEKHM1P1, PECAM1, PRKCA, TEX2, PSMD12, SCN4A, SMURF2, SNORA50C, SNORD104, MIR634, CACNG1, AXIN2, RGS9, CEP95, PRR29, CD79B, HELZ) 0.265041170682027 28 0.0534297739162421 0.763994439386565 2026 0.193208487256262 2 2 0 -6.75781512382236 LTS-001 chr17 65574290 65977682 403393 * c(SNORA38B, BPTF, NOL11, PITPNC1) 0.248142791370824 2 0.0162634559672906 0.965411388568878 360 0.191989895712536 2 2 0 -7.60292116112434 LTS-001 chr17 65977683 66536749 559067 * c(LINC00674, BPTF, ARSG, C17orf58, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, MIR635, SLC16A6) 0.217 1 NA 0.951837340323916 421 0.219719082918873 3 3 0 -5.76541231329083 LTS-001 chr17 66536750 67411254 874505 * c(MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, ABCA6, ABCA5, FAM20A, PRKAR1A, MAP2K6) 0.205464313962219 8 0.0286705423736629 1.0177957324814 974 0.250957082724339 3 3 0 -6.81863295638274 LTS-001 chr17 67411255 80363385 12952131 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, NA NA NA NA NA NA NA NA NA LTS-001 TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, CBX8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.186494745045835 345 0.0544163393154678 1.0824830621495 14397 0.368418179392301 4 4 0 -6.92484329533016 LTS-001 NA NA NA NA LTS-001 chr17 80363386 80364268 883 * OGFOD3 NA 0 NA 2.02 1 NA NA NA NA NA LTS-001 chr17 80364269 80386556 22288 * c(HEXDC, OGFOD3) 0.210389634630387 4 0.0348652166683836 2.06660248655339 39 0.850521317470047 8 7 1 -6.73728516164903 LTS-001 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.911 1 NA NA NA NA NA LTS-001 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.193686582364036 28 0.0359500498561001 1.04329290276213 878 0.277165577781737 4 4 0 -6.86052805926936 LTS-001 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.21589572116915 13 0.165076012017463 4 NA NA -5.76688054389408 LTS-001 chr18 116845 166819 49975 * c(ROCK1P1, USP14) 0.287 1 NA 0.733824517343423 61 0.218184504816626 2 2 0 -5.76675786424318 LTS-001 chr18 166820 5132835 4966016 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.276516368500737 54 0.0730693839492285 0.670757649751297 1923 0.186786608004456 1 1 0 -8.2167777692082 LTS-001 chr18 5132836 5132925 90 * character(0) NA 0 NA 0.788 1 NA NA NA NA NA LTS-001 chr18 5132926 8546022 3413097 * c(LINC01387, LOC100192426, MIR4317, MIR3976, LINC00526, EPB41L3, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.253141295001594 55 0.0445016399652413 0.855781045047817 1341 0.560638776571299 2 2 0 -6.83094178826063 LTS-001 chr18 8546023 13105169 4559147 * c(PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, APCDD1, RAB12, ANKRD12, MTCL1, GNAL, ANKRD62, IMPA2, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, CEP76, SEH1L, TXNDC2, TUBB6, NAPG, VAPA, PPP4R1) 0.265271157592636 69 0.0667162177318221 0.783801965530736 2804 1.10706870380569 2 2 0 -6.73308999162117 LTS-001 chr18 13105170 13113558 8389 * CEP192 NA 0 NA 1.297 1 NA NA NA NA NA LTS-001 chr18 13113559 14866503 1752945 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, CEP192, LDLRAD4, RNMT) 0.301178778925154 11 0.0582560180270128 0.864938825325208 539 0.217979855474775 2 2 0 -7.18315550123941 LTS-001 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.05239065368596 33 0.428196212281381 4 NA NA -5.76777155387131 LTS-001 chr18 18529727 19119801 590075 * c(ESCO1, ROCK1, GREB1L) 0.218 1 NA 0.757412866960485 401 0.169380698899258 2 2 0 -5.77507616644277 LTS-001 chr18 19119802 23748442 4628641 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, CTAGE1, SNRPD1, SS18, LOC729950, TMEM241, RIOK3, CABLES1) 0.284382516969552 17 0.0901769094613471 0.765105910860254 2359 0.191019357349023 2 2 0 -6.78883390389723 LTS-001 chr18 23748443 23748455 13 * PSMA8 NA 0 NA 0.582 1 NA NA NA NA NA LTS-001 chr18 23748456 23758989 10534 * PSMA8 0.356 1 NA 0.263025492076767 40 0.171749472809253 0 0 0 -5.80790426234262 LTS-001 chr18 23758990 29225430 5466441 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, KCTD1, AQP4, TAF4B, TTR, PCAT18, CHST9, B4GALT6) 0.248484958828659 25 0.0489233413958341 0.836907131755857 1446 0.200774052204398 2 2 0 -7.17896836681931 LTS-001 chr18 29225431 29237834 12404 * B4GALT6 NA 0 NA 0.745 1 NA NA NA NA NA LTS-001 chr18 29237835 29709240 471406 * c(SLC25A52, TRAPPC8, RNF138, RNF125, B4GALT6) 0.285610568182637 7 0.0448011479444763 0.694912057049771 358 0.177969332575153 2 2 0 -6.97406109708698 LTS-001 chr18 29709241 29709327 87 * RNF138 NA 0 NA 0.96 1 NA NA NA NA NA LTS-001 chr18 29709328 51905634 22196307 * c(ZSCAN30, SNORD58C, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, ZNF271P, MAPRE2, POLI, HAUS1, LOXHD1, INO80C, STARD6, C18orf25, C18orf54, TCEB3C, DCC, DTNA, ZBTB7C, SKA1, CFAP53, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, CCDC178, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, NA NA NA NA NA NA NA NA NA LTS-001 MEP1B, WBP11P1, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, MEX3C, RNF138, PIK3C3, DYM, MOCOS, RPRD1A, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RIT2, RPL17, KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, NOL4, MBD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.257723231003308 116 0.0723368950592061 0.81008846048839 7362 0.272485652064179 2 2 0 -6.98517804577822 LTS-001 NA NA NA NA LTS-001 chr18 51905635 52937214 1031580 * c(C18orf54, DYNAP, RAB27B, TCF4, CCDC68) 0.21039891821392 9 0.0350384709204675 0.99675531095909 404 0.341566345250089 3 3 0 -6.74787011272636 LTS-001 chr18 52937215 52942836 5622 * TCF4 NA 0 NA 0.824 1 NA NA NA NA NA LTS-001 chr18 52942837 77474921 24532085 * c(LOC100131655, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, MIR4529, MIR3591, MIR5011, LINC-ROR, LINC01544, TSHZ1, CD226, MALT1, ALPK2, FAM69C, CCBE1, CBLN2, CYB5A, FBXO15, DOK6, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, GALR1, RTTN, SALL3, CDH20, BOD1L2, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, RAX, LOC339298, CPLX4, ATP9B, OACYLP, LMAN1, LINC01538, NA NA NA NA NA NA NA NA NA LTS-001 LOC400655, LINC00909, C18orf65, MIR122, MBP, MC4R, NARS, NFATC1, SERPINB2, ST8SIA3, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, ZCCHC2, ZNF532, ZNF407, CNDP2, KIAA1468, BCL2, SERPINB3, SERPINB4, LOC643542, C18orf63, TCF4, ZNF236, CCDC102B, NETO1, CNDP1, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, SEC11C, CTDP1, DSEL, SOCS6, TXNL1, ONECUT2, VPS4B, ZNF516) 0.264336851221732 143 0.0841531700692237 0.793309455654291 7687 0.392877872643088 2 2 0 -6.76011708463333 LTS-001 NA NA NA NA LTS-001 chr18 77474922 78005362 530441 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, HSBP1L1, RBFA, PQLC1, PARD6G, CTDP1) NA 0 NA 0.773275237538188 519 0.18471791466854 2 NA NA -5.76511587378217 LTS-001 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.315 1 NA 0.889126665008944 17 0.514287399623756 3 3 0 -5.76696518637938 LTS-001 chr19 282754 5866724 5583971 * c(C19orf71, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, NA NA NA NA NA NA NA NA NA LTS-001 AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, SBNO2, KDM4B, ZFR2, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, ODF3L2, MKNK2, GPX4, UHRF1, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, HSD11B1L, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MIR7-3, MATK, PLIN5, GADD45B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 NFIC, NRTN, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PRTN3, AZU1, NCLN, SPPL2B, DUS3L, SHD, PTBP1, WDR18, REXO1, PTPRS, ZNF77, CACTIN, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, PLPPR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ZNF556, UBXN6, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, ATCAY, PLPP2, S1PR4, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, REEP6, LONP1, APBA3, SAFB2, CDC34) 0.27109387003411 282 0.0541484312883496 0.785872644009169 10052 0.3259032184667 2 2 0 -6.74231974775114 LTS-001 NA NA NA NA LTS-001 chr19 5866725 5867748 1024 * FUT5 0.253 1 NA 0.779294473592009 19 0.130792188188852 2 2 0 -5.76441016668933 LTS-001 chr19 5867749 9047123 3179375 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, ZNF558, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, FUT5, KANK3, ACTL9, OR2Z1, SLC25A41, MBD3L5, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, VMAC, CTXN1, MLLT1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, NA NA NA NA NA NA NA NA NA LTS-001 MAP2K7, PSPN, RETN, GPR108, XAB2, MCOLN1, CAMSAP3, RFX2, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, ACSBG2, ADAMTS10, CLPP, CAPS, PRAM1, ALKBH7, ZNF414, FBN3, RANBP3, MBD3L1, KHSRP, TNFSF14, TNFSF9, RAB11B, CRB3, PEX11G, TRIP10, MUC16, CD70) 0.253474422816928 174 0.0701617305042216 0.797350537093669 5176 0.219404622278615 2 2 0 -6.76828955637036 LTS-001 NA NA NA NA LTS-001 chr19 9047124 9266767 219644 * c(OR7G1, OR1M1, OR7G2, OR7G3, ZNF317, MUC16) 0.238489213375729 14 0.0770029612674477 0.891695772503427 832 0.276464540928855 3 3 0 -6.80043445034152 LTS-001 chr19 9266768 10961273 1694506 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, ZNF266, TMED1, CDC37, FDX1L, RAVER1, OR7D4, ILF3-AS1, ZNF560, ZNF846, OR7D2, DNM2, DNMT1, C19orf38, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, C3P1, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, PIN1, S1PR5, ZNF562, FBXL12, C19orf66, PPAN, SLC44A2, ZNF317, UBL5, KRI1, SNORD105, PPAN-P2RY11, MIR638, ICAM5, NA NA NA NA NA NA NA NA NA LTS-001 ZNF812P, TYK2, ZNF121, ZNF177, ZNF426, QTRT1, ANGPTL6, ZNF559, ATG4D, EIF3G, S1PR2, ZNF561, OLFM2, KEAP1) 0.267131252163679 67 0.0629878158693198 0.787294723119966 3158 0.255666682403578 2 2 0 -6.73503835072082 LTS-001 NA NA NA NA LTS-001 chr19 10961274 10961289 16 * C19orf38 NA 0 NA 0.818 1 NA NA NA NA NA LTS-001 chr19 10961290 10966921 5632 * C19orf38 NA 0 NA 1.396 1 NA NA NA NA NA LTS-001 chr19 10966922 11031464 64543 * c(CARM1, C19orf38) 0.395 1 NA 1.15117502328299 73 0.298411398296347 4 4 0 -5.76441689277259 LTS-001 chr19 11031465 19770774 8739310 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, ZNF625-ZNF20, SUGP2, DDX39A, ZNF443, AKAP8, B3GNT3, KLF2, IFI30, CARM1, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CCDC151, ZNF653, CIB3, RLN3, CALR3, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, LRRC25, OR1I1, NR2C2AP, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, ZNF563, SPC24, NA NA NA NA NA NA NA NA NA LTS-001 CILP2, LINC00905, ZNF791, ZNF564, ZNF709, ZNF433, SSBP4, DHPS, DNASE2, ELAVL3, ZNF627, DAND5, FAM129C, EPOR, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, ZNF763, ZNF844, OR10H5, NWD1, SLC25A42, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, TMEM205, YJEFN3, SLC27A1, KCNN1, ZNF788, CLEC17A, CYP4F24P, OR7A10, LDLR, ZNF833P, HAPLN4, CYP4F3, LYL1, MIR181C, MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, ECSIT, WDR83OS, PDE4C, ISYNA1, ZNF44, PIK3R2, TM6SF2, ACP5, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TMEM161A, C19orf60, MAP1S, KLHL26, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, USE1, PRKCSH, ANGPTL8, ATP13A1, RGL3, PTGER1, MIR181D, ZNF490, DOCK6, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, PLPPR2, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, SMARCA4, CYP4F12, BST2, MIR639, PRDX2, TPM4, ZNF878, LOC729966, BORCS8, UBA52, ZNF20, ZNF69, ZNF136, CACNA1A, YIPF2, C19orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, ZNF442, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ELOF1, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 IL27RA, GDF15, TECR, RAB3D, IER2, ADGRE5) 0.453444293766523 333 0.0592777792612906 1.11812357193594 15654 0.275814449323931 4 2 2 -6.83865933656415 LTS-001 NA NA NA NA LTS-001 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.647 1 NA NA NA NA NA LTS-001 chr19 19772755 23869823 4097069 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.42692026234516 31 0.0738980116717105 0.960787796568687 1313 0.226200466633112 3 2 1 -6.81216463705089 LTS-001 chr19 23869824 24345121 475298 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.06891094541231 255 0.318254571970142 4 NA NA -5.77825369314659 LTS-001 chr19 28247625 29704002 1456378 * c(LINC01532, LINC00906, LINC00662, UQCRFS1) 0.192 1 NA 1.16401522004368 23 0.262613739710216 4 4 0 -5.76727269171496 LTS-001 chr19 29704003 41930935 12226933 * c(HPN-AS1, LINC01531, LOC100129935, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, THEG5, MIA-RAB4B, RAB4B-EGLN2, UBA2, MIR4530, LOC100631378, LINC00904, MIR5196, UPK1A-AS1, IFNL4, PAK4, TMEM147, CEBPA, CEBPG, SPINT2, DLL3, POP4, HCST, UPK1A, HNRNPUL1, SLC7A9, MAP4K1, EGLN2, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, WDR88, EID2B, WTIP, ZNF792, HSPB6, RINL, FBXO27, C19orf47, COX6B1, COX7A1, NA NA NA NA NA NA NA NA NA LTS-001 HIPK4, ZNF420, ZNF565, FAM98C, CAPN12, DPY19L3, LGALS16, TTC9B, ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF567, ZNF383, ZNF781, EID2, ZNF780B, LGI4, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, AKT2, FBL, ETV2, ZFP30, ZNF507, SIRT2, CYP2G1P, SIPA1L3, HAUS5, PLD3, ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, EIF3K, GPI, IFNL2, IFNL3, IFNL1, ZNF780A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 C19orf54, LOC284395, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR1, FFAR3, FFAR2, LGALS13, CYP2S1, SERTAD3, SERTAD1, HNRNPL, HPN, APLP1, ZNF181, ZNF260, ZNF546, VSTM2B, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, RGS9BP, KRTDAP, ZNF790, NUDT19, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LOC400684, LOC400685, LGALS17A, LRP3, MAG, MAP3K10, NFKBIB, NPHS1, ATP4A, ZNF571, LSR, PEPD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 FXYD1, FXYD3, FXYD7, FXYD5, RAB4B, POLR2I, PAF1, SARS2, GPATCH1, SAMD4B, MED29, AXL, PSENEN, ZNF302, LIN37, SLC7A10, LGALS14, EXOSC5, PSMC4, PSMD8, TSHZ3, LRFN1, GRAMD1A, ZFP14, ZNF529, PRX, SPTBN4, HAMP, CATSPERG, PRODH2, BCKDHA, MRPS12, RPS16, RYR1, SCN1B, C19orf33, TMEM91, CCER2, SCGB1B2P, CHST8, SDHAF1, LOC644189, LOC644554, BLVRB, PLEKHG2, LGALS7B, SNRPA, SUPT5H, MIR641, TGFB1, OVOL3, LOC728752, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TYROBP, UQCRFS1, USF2, ZFP36, ZNF146, KCTD15, PLEKHF1, RBM42, LRFN3, IGFLR1, COQ8B, CNTD2, CEBPA-AS1, ITPKC, B9D2, ACTN4, MIA, DPF1, CAPNS1, C19orf12, WDR87, KIRREL2, ANKRD27, LTBP4, PDCD2L, ZNF527, ZNF607, NFKBID, CEP89, ZNF382, ZNF566, ALKBH6, RHPN2, URI1, FCGBP, CCNE1, ZNF30, CCDC97, YIF1B, PDCD5, FAAP24, DYRK1B, TDRD12, ZNF461, ZNF585B, NUMBL, TIMM50, SHKBP1, DMKN, CD22, NA, KCNK6, PPP1R14A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 GMFG, KIAA0355, ZNF536, KMT2B) 0.441167115320292 372 0.0803235203693682 1.11704584682401 14703 0.29008405121104 4 2 2 -6.79651368854016 LTS-001 NA NA NA NA LTS-001 chr19 41930936 46124531 4193596 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, APOC4-APOC2, MIR4531, LIPE-AS1, TOMM40, CEACAM5, RABAC1, ZNF234, CEACAM3, PPP1R13L, CD3EAP, CEACAM7, CEACAM8, CEACAM4, CLASRP, CKM, ZNF526, CLPTM1, CEACAM20, IRGQ, ZNF428, PPM1N, KLC3, IGSF23, LYPD4, ZNF296, DEDD2, MEGF8, CADM4, ERCC1, ERCC2, ERF, CIC, ETHE1, FOSB, PRG1, CBLC, EML2, ZNF285, LYPD3, GPR4, PRR19, TMEM145, NA NA NA NA NA NA NA NA NA LTS-001 CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GRIK5, GSK3A, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, B3GNT8, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, PINLYP, LIPE, BCAM, PSG8, CEACAM6, ATP1A3, PAFAH1B3, PLAUR, POU2F2, ATP5SL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CEACAM19, CD177, MARK4, PVR, NECTIN2, RELB, BCL3, RPS19, RTN2, CEACAM1, DMRTC2, ZNF574, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 PSG10P, PHLDB3, VASP, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, OPA3, TEX101, CNFN, CEACAM21, EXOC3L2, ARHGEF1, ZNF235, CD79A) 0.435848388511096 154 0.0688197504434536 1.02429590441948 6250 0.233633099171852 3 2 1 -7.06058474357453 LTS-001 NA NA NA NA LTS-001 chr19 46124532 46145661 21130 * c(EML2-AS1, EML2, MIR330) 0.486 1 NA 1.04853376571285 73 0.192270168596472 3 3 0 -5.76687184823922 LTS-001 chr19 46145662 50412217 4266556 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, SAE1, MIR4749, MIR4750, MIR5088, RNU6-66P, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PNKP, PTH2, CGB1, CGB2, LMTK3, AP2S1, CPT1C, ALDH16A1, NTN5, CRX, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF114, SPACA4, DMPK, NA NA NA NA NA NA NA NA NA LTS-001 DMWD, ADM5, EMP3, FCGRT, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, SYNGR4, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, IRF3, KCNA7, IGFL1, KCNJ14, BHMG1, IGFL3, LHB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 LIG1, MIR150, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MIR769, CA11, FKRP, TBC1D17, FUZ, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.440830219509858 208 0.0543377129572455 1.00364012431765 8540 0.42724824607925 4 2 2 -6.98085616812898 LTS-001 NA NA NA NA LTS-001 chr19 50412218 50435747 23530 * c(ATF5, NUP62, IL4I1) 0.309 1 NA 0.824406422434827 25 0.109337977543639 2 2 0 -5.76802313523451 LTS-001 chr19 50435748 54727001 4291254 * c(SIGLEC14, MIR935, SNAR-F, LOC100129083, SNAR-B2, SNAR-D, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, MIR4751, KLK11, LILRB3, KLK8, BIRC8, FAM71E1, SIGLEC11, CLDND2, ZNF816, OSCAR, ZNF813, JOSD2, IZUMO2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, ETFB, ATF5, FPR1, FPR2, FPR3, NAPSB, KLK5, ZNF473, KLK13, PRPF31, NA NA NA NA NA NA NA NA NA LTS-001 SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, LOC284379, VSTM1, GPR32, TFPT, HAS1, VN1R2, VN1R4, C19orf81, ZNF677, KLK3, KCNC3, KLK1, KLK2, ZNF808, ZNF761, ZNF818P, LIM2, ZNF321P, SIGLEC16, LOC400710, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, TARM1, MIR372, MIR373, MYBPC2, NDUFA3, NKG7, CNOT3, DPRX, SHANK1, VRK3, POLD1, PPP2R1A, ZNF331, ASPDH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 KLK15, ZNF701, ZNF83, ZNF415, PRKCG, KLK7, KLK6, KLK10, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, KLKP1, RPS9, CLEC11A, FAM90A27P, ZNF649, SPIB, SNORD88A, SNORD88B, SNORD88C, MIR643, CEACAM18, LINC01530, NR1H2, ZNF28, ZNF137P, ZNF175, TSEN34, MBOAT7, LENG1, LILRA6, MYH14, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, SYT3, ZNF528, ZNF347, ZNF577, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ZNF765, NLRP12, MYADM, ZNF845, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4, ZNF432) 0.422414210707787 187 0.109814438548358 1.016099310788 7202 0.583111150757387 3 2 1 -6.77945662231028 LTS-001 NA NA NA NA LTS-001 chr19 54727002 54735497 8496 * c(LILRB3, LILRA6) NA 0 NA 1.617 1 NA NA NA NA NA LTS-001 chr19 54735498 54746753 11256 * c(LILRB3, LILRA6) 0.282977581270824 3 0.0640338452174577 1.54340994540477 54 0.539986674525649 9 7 2 -6.73876646118221 LTS-001 chr19 54746754 54754227 7474 * LILRA6 NA 0 NA 0.911 1 NA NA NA NA NA LTS-001 chr19 54754228 54800203 45976 * c(MIR4752, LILRB2, LILRB5, LILRA3, LILRA6) 0.464980338087996 5 0.0288790581563873 0.994223583402311 161 0.22772115232074 4 2 2 -7.3559723357134 LTS-001 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.130552119530032 39 0.243026733616616 0 NA NA -6.00061673554607 LTS-001 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.947 1 NA NA NA NA NA LTS-001 chr19 54818558 55331372 512815 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.418010388808045 35 0.117186470667748 0.969260064763382 1002 0.28722876449585 3 2 1 -6.7473662815205 LTS-001 chr19 55331373 55342134 10762 * c(KIR2DS4, KIR3DL1) 0.32 1 NA 1.13963856789962 20 0.467188711448878 4 4 0 -5.76441124618477 LTS-001 chr19 55342135 55377909 35775 * c(KIR2DS4, KIR3DL1, KIR3DL2) 0.273463248575331 17 0.15715230061388 1.06733406999535 65 0.580397471565823 2 2 0 -6.74101959273594 LTS-001 chr19 55377910 55396900 18991 * c(FCAR, KIR3DL1, KIR3DL2) 0.453 1 NA 0.955014354676576 27 0.343513300272911 3 3 0 -5.76441740708606 LTS-001 chr19 55396901 56249765 852865 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628, NCR1) 0.428707070543881 57 0.104824507240892 1.00258478410705 2419 0.267216611409008 3 2 1 -6.7892135420868 LTS-001 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 1.666 1 NA NA NA NA NA LTS-001 chr19 56270381 56284096 13716 * c(RFPL4A, RFPL4AL1) 0.435521460064418 3 0.0603075451332584 1.82472217695917 52 2.11457520988268 8 4 4 -6.73329496245707 LTS-001 chr19 56284097 56284175 79 * RFPL4AL1 NA 0 NA 0.456 1 NA NA NA NA NA LTS-001 chr19 56284176 59082605 2798430 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZSCAN22, NA NA NA NA NA NA NA NA NA LTS-001 ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.441956321074603 165 0.0680568715702032 1.01530513818328 4872 0.506416833699662 4 2 2 -6.83605829341654 LTS-001 NA NA NA NA LTS-001 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.918828196610515 9 0.156057236650888 3 NA NA -5.76448704408184 LTS-001 chr20 68260 76962 8703 * DEFB125 0.389 1 NA 1.06226487671341 11 0.411830017891318 4 4 0 -5.76458999563347 LTS-001 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.403117165344009 56 0.0762998102157603 0.941269308092712 1935 0.312947986414513 3 2 1 -6.73892844344514 LTS-001 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.079 1 NA NA NA NA NA LTS-001 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0792949606672437 39 0.00525323626235011 0 NA NA -24.1618148987838 LTS-001 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 0.935 1 NA NA NA NA NA LTS-001 chr20 1600391 26063702 24463312 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100134868, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, NA NA NA NA NA NA NA NA NA LTS-001 CST1, CST2, CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SNX5, GNRH2, LOC284788, LOC284798, FAM182A, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TGM3, THBD, LINC01433, FAM182B, ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.402990674051634 236 0.0708534007621882 0.961167613146968 12499 0.289238735548061 3 2 1 -6.7350177698708 LTS-001 NA NA NA NA LTS-001 chr20 26063703 26063781 79 * FAM182A NA 0 NA 0.605 1 NA NA NA NA NA LTS-001 chr20 26063782 26188981 125200 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.321636485873185 11 0.101853102777748 0.673738857080681 39 0.335673701692726 1 1 0 -6.77665082915589 LTS-001 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.558761402618781 3 0.0525388744962559 1 NA NA -5.76444582274919 LTS-001 chr20 29625845 29625852 8 * FRG1BP 0.187 1 NA 1.352 1 NA NA NA NA NA LTS-001 chr20 29625853 33935122 4309270 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, MLLT10P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, FRG1BP, NA NA NA NA NA NA NA NA NA LTS-001 C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, GDF5, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.394209284828085 127 0.0844950328343524 0.96185630326989 5726 0.24309860307943 3 2 1 -6.73591466560084 LTS-001 NA NA NA NA LTS-001 chr20 33935123 33954257 19135 * c(UQCC1, GDF5) NA 0 NA 0.837 1 NA NA NA NA NA LTS-001 chr20 33954258 36718631 2764374 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MYL9, BLCAP, CEP250, VSTM2L, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, NNAT, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, SRC, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39, TTI1) 0.391013782089443 12 0.126206270554488 0.912562349230064 3618 0.195743545676503 3 2 1 -6.86035826952556 LTS-001 chr20 36718632 37357300 638669 * c(SNHG11, SLC32A1, ADIG, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, RPRD1B, BPI, SNORA71E, SNORA71C, SNORA71D, TGM2, KIAA1755) 0.445055716839737 45 0.0424297756131924 1.15431156395969 1014 0.309807256994137 4 2 2 -6.77181946489719 LTS-001 chr20 37357301 37357384 84 * SLC32A1 NA 0 NA 0.698 1 NA NA NA NA NA LTS-001 chr20 37357385 44108801 6751417 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, SGK2, WFDC2, TOMM34, SERINC3, PTPRT, PKIG, RBPJL, FITM2, WFDC12, SLC32A1, RIMS4, R3HDML, GTSF1L, WFDC5, ZHX3, L3MBTL1, PPP1R16B, TP53TG5, HNF4A, LOC339568, KCNS1, MYBL2, IFT52, OSER1, PIGT, PI3, PLCG1, DBNDD2, JPH2, KCNK15, DHX35, SDC4, SEMG1, SEMG2, SRSF6, LPIN3, SLPI, STK4, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, FAM83D, CHD6, NA NA NA NA NA NA NA NA NA LTS-001 TOX2, MATN4, WISP2, EMILIN3, SYS1, MAFB) 0.411122828591952 77 0.0840287744063286 0.951649116203801 4647 0.253581420694278 3 2 1 -6.75296821529315 LTS-001 NA NA NA NA LTS-001 chr20 44108802 44141045 32244 * WFDC2 NA 0 NA 1.608 1 NA NA NA NA NA LTS-001 chr20 44141046 48770152 4629107 * c(ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3616, EPPIN-WFDC6, TRERNA1, ARFGEF2, SPINT3, UBE2C, TP53RK, DNTTIP1, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, CSE1L, WFDC13, EYA2, SLC9A8, ZMYND8, WFDC11, WFDC9, SNORD12C, WFDC10B, LINC00494, KCNB1, TMEM189, TMEM189-UBE2V1, SPINT4, MMP9, ZFAS1, SLC35C2, PLTP, CTSA, DDX27, ZNF334, RNF114, SULF2, EPPIN, ZNFX1, PTGIS, SLC12A5, PREX1, NCOA5, ELMO2, NA NA NA NA NA NA NA NA NA LTS-001 ZNF335, PCIF1, CDH22, SLC13A3, SNAI1, STAU1, SNORD12, TNNC2, UBE2V1, MKRN7P, SLC2A10, NCOA3, WFDC8, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.416848128180139 68 0.0509253874153795 1.24964484063456 4880 0.288659730358324 5 3 2 -6.8607997505528 LTS-001 NA NA NA NA LTS-001 chr20 48770153 48770212 60 * c(TMEM189, TMEM189-UBE2V1) NA 0 NA 1.063 1 NA NA NA NA NA LTS-001 chr20 48770213 48808889 38677 * c(CEBPB, TMEM189, TMEM189-UBE2V1) 0.414 1 NA 0.704546856719041 39 0.445686955550842 2 2 0 -5.76562007071788 LTS-001 chr20 48808890 62738311 13929422 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, ARFRP1, OGFR-AS1, RGS19, SYCP2, CEBPB, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, TSHZ2, C20orf85, ZNF831, MIR1-1HG, NA NA NA NA NA NA NA NA NA LTS-001 COL9A3, GATA5, ZBTB46, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, FAM65C, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, ADNP, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, MOCS3, GNAS, SLCO4A1, NPBWR2, LINC00176, LINC01270, C20orf197, MIR646HG, KCNG1, KCNQ2, FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, NFATC2, NTSR1, OPRL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, BCAS4, ZFP64, ARFGAP1, DOK5, SLC2A4RG, PSMA7, PMEPA1, CASS4, SALL4, RAB22A, ZNF512B, PTK6, COL20A1, PTPN1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, AURKA, TAF4, TCEA2, MIR645, MIR647, TFAP2C, TPD52L2, HAR1A, HAR1B, ZNF217, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TUBB1, ZBP1, CABLES2, PARD6B, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, DPM1, VAPB, OSBPL2) 0.422004316546538 308 0.0528765470423766 1.29693254768619 11143 0.342684022153828 5 3 2 -6.77949785900354 LTS-001 NA NA NA NA LTS-001 chr20 62738312 62959313 221002 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.28879248967979 248 0.395730564779554 5 NA NA -5.76524688574809 LTS-001 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.237 1 NA 0.457520440595176 21 0.399712342995381 0 0 0 -5.76755093086845 LTS-001 chr21 9907203 11059877 1152675 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.350437221880515 47 0.0785036162309234 0.972453281914343 166 0.439106818887585 4 3 1 -6.83999770438746 LTS-001 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.939340296137554 5 0.165839380124264 3 NA NA -5.76495002871894 LTS-001 chr21 14745307 14756794 11488 * character(0) 0.482 1 NA 0.925187707764576 9 0.26076143844092 3 3 0 -5.76457563509492 LTS-001 chr21 14756795 15988325 1231531 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.425599752049477 22 0.106101560429341 0.926873400192765 425 0.336175785649154 3 2 1 -6.77757530051807 LTS-001 chr21 15988326 15991856 3531 * LOC388813 NA 0 NA 1.338 1 NA NA NA NA NA LTS-001 chr21 15991857 40604429 24612573 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, MIR4759, RWDD2B, RNU6-67P, OLIG2, DSCR4, DSCR3, USP16, CCT8, BTG3, ADAMTS5, LINC00310, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, CXADR, RCAN1, DYRK1A, LINC00189, ERG, ETS2, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, NA NA NA NA NA NA NA NA NA LTS-001 GABPA, DSCR9, DSCR10, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, KCNJ6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 KCNJ15, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, LINC00114, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, PIGP, ATP5J, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, SETD4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, ITSN1, SIM2, MRPS6, SLC5A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SOD1, SON, SNORA80A, TIAM1, TTC3, KRTAP19-8, LINC01548, TMEM50B, MIR802, RUNX1-IT1, NRIP1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.442130623596607 269 0.0814400249719077 1.02618805480948 10203 0.680707742149341 3 2 1 -7.0143944225071 LTS-001 NA NA NA NA LTS-001 chr21 40604430 40714552 110123 * c(BRWD1-AS1, NA, HMGN1, BRWD1) NA 0 NA 0.977236135095749 166 0.318662158911995 3 NA NA -5.76454362458836 LTS-001 chr21 40714553 40715001 449 * HMGN1 NA 0 NA 0.678 1 NA NA NA NA NA LTS-001 chr21 40715002 40778182 63181 * c(LCA5L, HMGN1, WRB) 0.258 1 NA 0.761179707933974 83 0.242398643883516 2 2 0 -5.76479624659125 LTS-001 chr21 40778183 48084989 7306807 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, DSCAM-IT1, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, NA NA NA NA NA NA NA NA NA LTS-001 COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, SH3BGR, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.284457863112938 301 0.0610002026030076 0.760695776175669 8510 0.224242867186654 2 2 0 -6.84776245078892 LTS-001 NA NA NA NA LTS-001 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 0.922 1 NA NA NA NA NA LTS-001 chr22 16157762 18389695 2231934 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, MICAL3, BID, OR11H1, SLC25A18) 0.442135966547492 51 0.05031407240875 1.08415563682408 1647 0.28348001059084 4 2 2 -6.79958773867325 LTS-001 chr22 18389696 18463638 73943 * c(MICAL3, MIR648) NA 0 NA 1.543 1 NA NA NA NA NA LTS-001 chr22 18463639 19109690 646052 * c(FLJ41941, USP18, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TUBA8, PEX26, PRODH, MICAL3, MIR648, DGCR6, DGCR2) 0.40748881482714 10 0.0476216570713601 1.37931694391259 485 0.365981024346178 5 3 2 -6.77230537156815 LTS-001 chr22 19109691 20307353 1197663 * c(MIR1286, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, RANBP1, MRPL40, RTN4R, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, C22orf29, CLTCL1, DGCR14, CDC45, DGCR6L, DGCR2) 0.413826816442181 31 0.088946873112882 1.0803915771352 2317 0.258079359233257 4 2 2 -6.80249603401409 LTS-001 chr22 20307354 20717994 410641 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) NA 0 NA 0.496790222859532 39 0.378433487132859 1 NA NA -5.82165608147306 LTS-001 chr22 20717995 20718442 448 * character(0) NA 0 NA 1.054 1 NA NA NA NA NA LTS-001 chr22 20718443 40814636 20096194 * c(DDTL, MIR301B, LOC100128531, LOC100130899, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, IGLL5, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, TUBA3FP, PIK3IP1, FAM83F, ELFN2, C1QTNF6, ZNF280A, SGSM1, EMID1, NA NA NA NA NA NA NA NA NA LTS-001 ANKRD54, ADORA2A, CRKL, APOBEC3D, SELENOM, ZNF280B, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, AIFM3, YDJC, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, GRK3, ADSL, AP1B1, CCDC116, CABP7, TMPRSS6, APOBEC3H, DDT, RNF215, APOBEC3A, APOBEC3F, EWSR1, MORC2, TNRC6B, HIC2, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, PRAME, SLC16A8, SEC14L2, RBFOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SEZ6L, RASD2, PATZ1, SH3BP1, SDF2L1, PPIL2, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, GSTTP1, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, POM121L1P, TXN2, TMEM184B, GGA1, FBXW4P1, SEC14L3, POM121L4P, RGL4, GGT1, SNORD43, GGT5, INPP5J, CYTH4, RSPH14, APOBEC3C, SGSM3, GNAZ, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, CARD10, UQCR10, POM121L8P, YPEL1, VPREB3, H1F0, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SERPIND1, HMOX1, SLC35E4, LOC339666, TEX33, IGLL1, IL2RB, PI4KAP2, KCNJ4, SDC4P, LRRC75B, LOC391322, LGALS1, LGALS2, LIF, LIMK2, LRRC74B, BCRP2, CHCHD10, LOC400927, SRRD, MIR130B, MB, MCM5, MFNG, MGAT3, MIF, MMP11, MN1, MPST, THAP7-AS1, P2RX6P, PIWIL3, MIAT, MYH9, ATF4, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, DRICH1, EIF3L, RTCB, MTFP1, PDGFB, MED15, UPB1, PI4KA, POLR2F, MIEF1, TUG1, CCDC157, MAPK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 ZMAT5, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RFPL1, APOBEC3G, RPL3, BCR, BCRP3, TMEM191C, ADORA2A-AS1, POM121L10P, FAM227A, LL22NC03-63E9.3, CES5AP1, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SLC7A4, SMARCB1, SLC2A11, SNRPD3, SOX10, SSTR3, TCN2, TIMP3, TOP1P2, MIR650, MIR658, MIR659, TST, SEC14L6, UBE2L3, VPREB1, XBP1, YWHAH, ZNF70, ZNF74, NOL12, KCTD17, FOXRED2, BAIAP2L2, THAP7, APOL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 APOL5, APOL4, APOL3, LZTR1, SYN3, GUCD1, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TMEM191A, TPST2, C22orf23, MYO18B, GALR3, KLHL22, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, TOP3B, HPS4, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, LARGE1, SNAP29, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, RAB36, PPM1F, BMS1P20, DEPDC5, SFI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 JOSD1) 0.433379574672551 542 0.0765728247751699 1.0542684371844 22730 0.2849637729671 4 2 2 -7.63161929628039 LTS-001 NA NA NA NA LTS-001 chr22 40814637 41077919 263283 * c(MCHR1, MKL1) NA 0 NA 1.06666955051302 117 0.198246884695529 4 NA NA -5.78534729192145 LTS-001 chr22 41077920 41078049 130 * MCHR1 NA 0 NA 0.898 1 NA NA NA NA NA LTS-001 chr22 41078050 41488036 409987 * c(MIR4766, SLC25A17, DNAJB7, MCHR1, XPNPEP3, ST13, RBX1) NA 0 NA 0.951638589164658 450 0.264745887287106 3 NA NA -5.7649341392723 LTS-001 chr22 41488037 41488232 196 * character(0) 0.29 1 NA 0.188350789417763 3 0.128339393796293 0 0 0 -5.76879704370454 LTS-001 chr22 41488233 42487006 998774 * c(NDUFA6-AS1, MIR1281, TOB2, TNFRSF13C, CHADL, MEI1, FAM109B, WBP2NL, POLR3H, EP300, ZC3H7B, XRCC6, CSDC2, DESI1, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, RANGAP1, SREBF2, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, SMDT1) 0.251895357658764 33 0.0832245046955413 0.779973252002293 2419 0.401613577820607 2 2 0 -6.74791939966102 LTS-001 chr22 42487007 42522457 35451 * NDUFA6-AS1 NA 0 NA 1.093 1 NA NA NA NA NA LTS-001 chr22 42522458 42536211 13754 * c(NDUFA6-AS1, CYP2D6) 0.304575300769144 9 0.138359234522954 1.10429174547144 69 0.402157587350952 5 4 1 -6.73882571516792 LTS-001 chr22 42536212 42536259 48 * CYP2D7 NA 0 NA 0.704 1 NA NA NA NA NA LTS-001 chr22 42536260 51137249 8600990 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, NA NA NA NA NA NA NA NA NA LTS-001 MCAT, LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-001 SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.278129692271199 333 0.0614734211804753 0.784161039808859 8383 0.208625621595404 2 2 0 -6.76348931028813 LTS-001 NA NA NA NA LTS-001 chr22 51137250 51220846 83597 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.708492953911545 201 0.168168435464469 2 NA NA -5.78077667227088 LTS-001 chrX 2699993 2700027 35 * XG 0.488 1 NA 1.576 1 NA NA NA NA NA LTS-001 chrX 2700028 3030450 330423 * c(ARSH, ARSD, ARSE, ARSF, XG, GYG2) 0.43557483084193 7 0.0849170463564576 1.23512088497148 463 0.244287170033679 4 2 2 -6.75147184314576 LTS-001 chrX 3030451 9915270 6884820 * c(LINC01546, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, SHROOM2, ANOS1, LOC389906, STS, ARSF, VCX3B, GPR143, VCX2, VCX3A, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4) 0.420252279084296 17 0.073349786478698 1.07293725455082 1305 0.266704791394029 4 2 2 -7.00082001489473 LTS-001 chrX 9915271 11157719 1242449 * c(CLDN34, CLCN4, HCCS, SHROOM2, ARHGAP6, MID1, WWC3) 0.457975256697132 11 0.0276767050061961 1.23853194022732 698 0.2879540605124 4 2 2 -7.19711077124561 LTS-001 chrX 11157720 15800751 4643032 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, AMELX, GLRA2, GPM6B, CA5BP1, TLR8-AS1, ARHGAP6, TLR7, TLR8, PIGA, GEMIN8, PRPS2, TMEM27, ACE2, TRAPPC2, BMX, TMSB4X, OFD1, PIR, ATXN3L, RAB9A, FRMPD4) 0.423460771739117 38 0.0820425591252712 1.0475423974625 2407 0.255292647271954 3 2 1 -7.06791243705739 LTS-001 chrX 15800752 15801131 380 * CA5B 0 1 NA 1.19809403587475 9 1.6752973948261 4 4 0 -5.76441029073481 LTS-001 chrX 15801132 15872985 71854 * c(CA5B, ZRSR2, INE2, AP1S2) 0.371573521869094 11 0.183220235087325 0.992484137736851 286 0.439778762148486 3 2 1 -6.74759880117822 LTS-001 chrX 15872986 16141644 268659 * c(GRPR, AP1S2) NA 0 NA 1.227 1 NA NA NA NA NA LTS-001 chrX 16141645 19378683 3237039 * c(PHKA2-AS1, MIR4768, ADGRG2, SCML2, RAI2, BEND2, GRPR, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RS1, SCML1, MAGEB17, CDKL5, S100G, REPS2, SYAP1) 0.299944909716109 13 0.211115869267117 1.1608277235776 1975 0.305821270868576 4 3 1 -6.75740486506666 LTS-001 chrX 19378684 20213265 834582 * c(SCARNA9L, MIR23C, EIF1AX, CXorf23, MAP7D2, SH3KBP1, MAP3K15, PDHA1, RPS6KA3, LOC729609) 0.462811781268862 3 0.035529330606322 1.0545493910526 966 0.271427511816168 4 2 2 -7.14478479522687 LTS-001 chrX 20213266 20222055 8790 * RPS6KA3 NA 0 NA 0.76 1 NA NA NA NA NA LTS-001 chrX 20222056 39935788 19713733 * c(SUPT20HL1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, PRDX4, IL1RAPL1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, ZNF645, FAM47A, MAGEB6, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, KLHL34, TAB3, HYPM, GK, LINC01281, CFAP47, MAGEB18, LANCL3, DCAF8L2, MAGEB5, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, OTC, MBTPS2, PDK3, PHEX, FTHL17, POLA1, BCOR, NA NA NA NA NA NA NA NA NA LTS-001 PRRG1, MID1IP1, RPGR, RPS6KA3, SAT1, NA, SMS, SCARNA23, DYNLT3, TSPAN7, XK, ZFX, APOO, CXorf21, KLHL15, TMEM47, SRPX, SYTL5, PCYT1B) 0.284509763477065 74 0.0791388396569195 0.741358160769663 5620 0.200243770904509 2 2 0 -7.44881063952985 LTS-001 NA NA NA NA LTS-001 chrX 39935789 39936156 368 * BCOR NA 0 NA 0.545 1 NA NA NA NA NA LTS-001 chrX 39936157 41378046 1441890 * c(LOC100132831, ATP6AP2, CXorf38, DDX3X, MPC1L, BCOR, NYX, USP9X, CASK, MED14) 0.281726631160017 5 0.0531864644435029 0.675781300440221 949 0.161861332235081 2 2 0 -7.40425522465661 LTS-001 chrX 41378047 43627999 2249953 * c(GPR82, GPR34, MAOA, MAOB, PPP1R2P9, CASK) 0.291621218408853 6 0.0552355561813825 0.746079877036339 424 0.148446109043804 2 2 0 -6.98796914560405 LTS-001 chrX 43628000 43890162 262163 * c(MAOB, NDP) NA 0 NA 0.84146354054602 109 0.186148088282748 2 NA NA -5.79038547014609 LTS-001 chrX 43890163 43890412 250 * character(0) NA 0 NA 1.468 1 NA NA NA NA NA LTS-001 chrX 43890413 44703935 813523 * c(FUNDC1, DUSP21, EFHC2) 0.489 1 NA 1.17043532032559 155 0.230953396024645 4 4 0 -5.76826642448194 LTS-001 chrX 44703936 49144016 4440081 * c(SNORA11C, HDAC6, UXT-AS1, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, ELK1, FTSJ1, GATA1, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIR221, MIR222, TBC1D25, FOXP3, CDK16, CFP, PLP2, NDUFB11, OTUD5, KRBOX4, CHST7, GRIPAP1, ZNF630, RBM3, RP2, DUSP21, ZNF674, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, SYP, TFE3, NA NA NA NA NA NA NA NA NA LTS-001 TIMP1, LINC01545, UBA1, SLC35A2, KDM6A, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, USP11, RBM10, UXT, SLC9A7, INE1, PPP1R3F, CCDC120, RGN, SLC38A5, JADE3) 0.41024596256681 37 0.146910858347163 1.26779392105826 5020 0.326743844800257 5 3 2 -6.7918387492166 LTS-001 NA NA NA NA LTS-001 chrX 49144017 53436460 4292444 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, IQSEC2, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, TSPYL2, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, KDM5C, SMC1A, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.396786223010643 20 0.1179629736735 1.13834321527944 1975 0.274225974283007 4 2 2 -6.79477663125507 LTS-001 chrX 53436461 53438669 2209 * SMC1A NA 0 NA 1.527 1 NA NA NA NA NA LTS-001 chrX 53438670 53559397 120728 * c(HUWE1, RIBC1, HSD17B10, SMC1A) 0 1 NA 1.51028101022841 151 0.725055735879974 6 6 0 -5.76441066987339 LTS-001 chrX 53559398 57622607 4063210 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, PAGE2, ALAS2, FGD1, PHF8, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, TSR2, FAM104B, PAGE5) 0.372912489923825 37 0.103897291336912 1.1095800380688 2762 0.254016016870582 4 3 1 -6.83411622573541 LTS-001 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 1.08604284878632 125 0.239865048617732 4 NA NA -5.7740668301475 LTS-001 chrX 61999880 63408092 1408213 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 1.13449342281538 297 0.471814392148884 4 4 0 -5.76484099598521 LTS-001 chrX 63408093 69830382 6422290 * c(MIR676, VSIG4, AMER1, OTUD6A, ASB12, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, FAM155B, YIPF6, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, GDPD2, MTMR8, ZC4H2, TEX11, EDA2R, PJA1, LAS1L, FRMD8P1, STARD8, HEPH) 0.325680437596643 14 0.20236808211608 1.08837934364285 2907 0.262432849887037 4 3 1 -6.88436097235984 LTS-001 chrX 69830383 69890179 59797 * TEX11 0.497 1 NA 0.9647216461959 21 0.207072324609175 3 3 0 -5.76441185696899 LTS-001 chrX 69890180 76712233 6822054 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, UPRT, MAGEE2, CXorf65, ZDHHC15, ABCB7, ITGB1BP2, GJB1, INGX, CXCR3, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, IL2RG, ZCCHC13, FLJ44635, FOXO4, LINC00891, RPS26P11, MIR374A, CITED1, NAP1L2, NONO, MIR384, RLIM, PBDC1, PHKA1, PIN4, CHIC1, NLGN3, ERCC6L, JPX, HDAC8, TEX11, MAGEE1, BCYRN1, RPS4X, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, NA NA NA NA NA NA NA NA NA LTS-001 XIST, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, MED12) 0.424139424690778 36 0.110311881096784 1.06980340016431 4090 0.247692948423081 4 2 2 -7.0430535897023 LTS-001 NA NA NA NA LTS-001 chrX 76712234 101439808 24727575 * c(ARMCX4, UBE2DNL, MIR4328, RPL36A-HNRNPH2, CYSLTR1, CHM, DACH2, COX7B, APOOL, HDX, TCEAL2, PABPC5, CSTF2, CYLC1, TCEAL6, TIMM8A, FAM46D, DIAPH2, DRP2, ZCCHC5, CENPI, BRWD3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, LPAR4, FAM133A, RPA4, HNRNPH2, BEX5, SATL1, ARL13A, XKRX, PGAM4, XRCC6P5, NAP1L3, TBX22, ARMCX1, ARMCX3, TAF9B, PGK1, CPXCR1, ATP7A, TAF7L, ARMCX6, POU3F4, ATRX, NXF5, KLHL4, PCDH19, NA NA NA NA NA NA NA NA NA LTS-001 TMEM35A, RPL36A, TNMD, BRDTP1, SH3BGRL, BTK, TSPAN6, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, TGIF2LX, SYTL4, ITM2A, ARMCX2) 0.427591747065296 71 0.0863952267852085 1.04014242261539 5938 0.453283035250768 3 2 1 -7.19114083501828 LTS-001 NA NA NA NA LTS-001 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.08 1 NA NA NA NA NA LTS-001 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.391018092084934 43 0.424743582343478 0 NA NA -5.76597993052841 LTS-001 chrX 101625091 101768564 143474 * character(0) NA 0 NA 1.034 1 NA NA NA NA NA LTS-001 chrX 101768565 117054395 15285831 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, NA NA NA NA NA NA NA NA NA LTS-001 GLRA4, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.436368368153847 45 0.0766122534176967 1.02094395634496 6773 0.240009395612105 3 2 1 -7.35957530370649 LTS-001 NA NA NA NA LTS-001 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.95 1 NA NA NA NA NA LTS-001 chrX 117079357 129201179 12121823 * c(ZBTB33, TEX13C, PRR32, MIR1277, SLC25A5-AS1, TENM1, STAG2, UTP14A, PGRMC1, DCAF12L1, ACTRT1, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, ELF4, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, DCAF12L2, SOWAHD, IL13RA1, LAMP2, SH2D1A, NDUFA1, OCRL, ZDHHC9, SASH3, WDR44, TMEM255A, NKRF, THOC2, KIAA1210, RPL39, BCORL1, CXorf56, CT47B1, UPF3B, CT47A7, SMARCA1, CT47A10, NA NA NA NA NA NA NA NA NA LTS-001 CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, XPNPEP2, MIR766, RNF113A, NKAP, LONRF3, CUL4B, APLN, KLHL13) 0.42748719528414 43 0.103012514157697 0.935862235865848 4759 0.246359007255665 3 2 1 -6.87426022245577 LTS-001 NA NA NA NA LTS-001 chrX 129201180 129507197 306018 * c(ELF4, ZNF280C, SLC25A14, AIFM1, RAB33A) 0 1 NA 0.914654654961738 387 0.289337343213464 3 3 0 -5.77030261546005 LTS-001 chrX 129507198 130433787 926590 * c(ENOX2, GPR119, ARHGAP36, IGSF1, RBMX2, SLC25A14) 0.41 1 NA 0.974687562710778 484 0.179240407295949 3 3 0 -5.7667829442395 LTS-001 chrX 130433788 130437987 4200 * IGSF1 NA 0 NA 1.101 1 NA NA NA NA NA LTS-001 chrX 130437988 136112707 5674720 * c(MIR450B, MIR934, LINC00892, LINC00633, LINC00629, HS6ST2-AS1, SLC9A6, PLAC1, ADGRG4, FAM122B, FAM122C, INTS6L, ZNF449, GPC4, FHL1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, FIRRE, HPRT1, OR13H1, CCDC160, IGSF1, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, TFDP3, VGLL1, STK26, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, RAP2C, NA NA NA NA NA NA NA NA NA LTS-001 SMIM10, SMIM10L2B, MIR542, BRS3, CT45A2, ZNF75D, MAP7D3, GPR101, USP26, PHF6, MIR503HG, FAM127A, HS6ST2, FRMD7, MMGT1, ARHGEF6, CD40LG) 0.337027377664991 26 0.138178730412685 1.30140732639444 3096 0.518428303349126 5 4 1 -6.79867259670922 LTS-001 NA NA NA NA LTS-001 chrX 136112708 136113464 757 * GPR101 0.441 1 NA 1.2853644727582 17 0.162930538249027 5 5 0 -5.76443000529817 LTS-001 chrX 136113465 145082685 8969221 * c(MIR890, MIR891B, MIR888, MIR892B, MIR892A, FGF13-AS1, MIR320D2, CDR1, SLITRK4, SPANXN3, MAGEC3, LINC00889, NA, NA, F9, FGF13, LDOC1, ATP11C, LINC00632, CXorf66, LOC389895, UBE2NL, MCF2, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR504, MIR505, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, ZIC3, GPR101, SLITRK2, TMEM257, MAGEC1) 0.415666629801096 23 0.0678312542371391 1.27684853123669 1585 0.328295356813047 5 3 2 -6.81634772441911 LTS-001 chrX 145082686 145109266 26581 * character(0) NA 0 NA 1.025 1 NA NA NA NA NA LTS-001 chrX 145109267 153580196 8470930 * c(FMR1-AS1, MIR891A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, DUSP9, VMA21, ABCD1, FLNA, FMR1, AFF2, GABRA3, GABRE, OPN1MW, SRPK3, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, NA NA NA NA NA NA NA NA NA LTS-001 MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MTM1, ATP2B3, NSDHL, PLXNB3, CXorf40B, AVPR2, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, BGN, SLC6A8, SSR4, MIR767, ZNF185, PRRG3, NAA10, TMEM187, TKTL1, CD99L2, TMEM185A, MTMR1, FATE1, CXorf40A, FAM58A, GPR50) 0.428053474595775 80 0.107186587579613 1.08347764996262 5684 0.332800597003422 4 2 2 -6.87888328749469 LTS-001 NA NA NA NA LTS-001 chrX 153580197 153714048 133852 * c(DNASE1L1, EMD, FLNA, GDI1, SNORA70, ATP6AP1, PLXNA3, RPL10, TAZ, UBL4A, LAGE3, FAM50A) NA 0 NA 1.0928358807159 890 0.214496642104478 4 NA NA -5.76844006950604 LTS-001 chrX 153714049 154774986 1060938 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, TMLHE, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, SLC10A3, IKBKG) NA 0 NA 1.00822828187759 1329 0.225148623975092 3 NA NA -5.79034625672456 LTS-001 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.679733817095261 25 0.228445456655777 1 NA NA -5.89500108816914 LTS-001 chrY 13309514 13309563 50 * character(0) 0 1 NA 2.661 1 NA NA NA NA NA LTS-001 chrY 13309564 13311500 1937 * character(0) 0.452121430803106 2 0.029698484809835 0.895378635874476 12 0.556928971043776 2 1 1 -6.94269765381813 LTS-001 chr1 65893 878314 812422 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.308 1 NA 0.949244991586549 89 0.357054712433673 2 2 0 -5.77413301817036 LTS-002 chr1 878315 1565972 687658 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.426380429093813 64 0.0576269389027526 0.85994920794439 2712 0.234925797312176 2 1 1 -6.76849540197246 LTS-002 chr1 1565973 1575836 9864 * c(MIB2, MMP23B, CDK11B) 0.25 1 NA 0.930052704535345 47 0.391075036983111 2 2 0 -5.76444505765573 LTS-002 chr1 1575837 1639726 63890 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.37182070331912 12 0.0901340752165989 0.842681350543271 279 0.338435832839314 2 2 0 -6.74301740093265 LTS-002 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.011 1 NA NA NA NA NA LTS-002 chr1 1643792 1646772 2981 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.306477245958847 39 0.261086993842237 0 NA NA -5.77973515845829 LTS-002 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.847 1 NA NA NA NA NA LTS-002 chr1 1647807 11783295 10135489 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, ARHGEF16, GNB1, LOC284661, UBIAD1, NA NA NA NA NA NA NA NA NA LTS-002 ZBTB48, C1orf174, TMEM52, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, MIR34A, LINC00982, RERE, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, EXOSC10, ERRFI1, HES2, CASZ1, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, TP73-AS1, PLEKHG5, LRRC47, DISP3, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, SLC2A5, NADK, SRM, MIR551A, TP73, CDK11A, SLC35E2B, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, THAP3, VAMP3, FBXO44, H6PD, PLCH2, CEP104, CDK11B, KLHL21, SLC35E2) 0.423440551940927 285 0.0774864771354867 0.890522153304449 10369 0.283982072349279 2 1 1 -6.75151502014729 LTS-002 NA NA NA NA LTS-002 chr1 11783296 11783451 156 * character(0) 0.345 1 NA 1.46847998769939 3 1.5018676151157 7 7 0 -5.76441016939514 LTS-002 chr1 11783452 15820041 4036590 * c(NPPA-AS1, MIR4632, PDPN, CTRC, FHAD1, CLCN6, LRRC38, AADACL3, TMEM51-AS1, KAZN, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, MTHFR, NPPA, NPPB, CELA2B, PLOD1, TMEM51, VPS13D, AGTRAP, MIIP, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, SNORA59B, TNFRSF1B, PRDM2, EFHD2, CASP9, KIAA2013, DHRS3, C1orf158, TNFRSF8, MFN2 NA NA NA NA NA NA NA NA NA LTS-002 ) 0.388454451918471 103 0.107061685278149 0.899075075144912 3202 0.324900612589024 2 2 0 -6.77216780766805 LTS-002 NA NA NA NA LTS-002 chr1 15820042 15850603 30562 * CASP9 0.308 1 NA 0.834393946444553 48 0.240066656486772 1 1 0 -5.76581820349511 LTS-002 chr1 15850604 16863398 1012795 * c(CROCCP3, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, SPEN, PLEKHM2, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, FBXO42, FBLIM1, NECAP2, RSC1A1, FLJ37453, ZBTB17, RSG1, AGMAT, CASP9, DDI2) 0.41161489604981 79 0.0645092225365896 0.877180615780162 2141 0.228420453147632 2 1 1 -6.74572120031039 LTS-002 chr1 16863399 16946438 83040 * c(NBPF1, CROCCP2) 0.207 1 NA 0.649191924731207 2 0.197989898732233 0 0 0 -5.7646870030769 LTS-002 chr1 16946439 16976825 30387 * c(MST1P2, CROCCP2) 0.285608111580294 15 0.120647578074481 0.855221046055926 87 0.279216908627718 4 4 0 -6.75314352574547 LTS-002 chr1 16976826 16977083 258 * MST1P2 0.362 1 NA 0.690301371819025 3 0.189711183996446 0 0 0 -5.76441945476079 LTS-002 chr1 16977084 16977353 270 * character(0) NA 0 NA 0.788577083005577 10 0.0813129072711639 1 NA NA -5.76441260377136 LTS-002 chr1 16977354 17009783 32430 * character(0) 0.403909454857896 3 0.104006410058868 0.555465510060025 39 0.294009373100561 0 0 0 -6.74849980970703 LTS-002 chr1 17009784 17009812 29 * character(0) 0.439 1 NA 1.002 1 NA NA NA NA NA LTS-002 chr1 17009813 21054635 4044823 * c(LOC100506730, MINOS1-NBL1, MIR4695, MST1L, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, FAM43B, DDOST, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, PADI4, AKR7L, TMCO4, PLA2G2D, ESPNP, PADI1, PLA2G2E, HTR6, LINC01141, PADI6, PLA2G2C, SH2D5, MFAP2, MINOS1, NBL1, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, CAMK2N1, RCC2, KIF17, SDHB, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, ACTL8, CAPZB, IGSF21, NA NA NA NA NA NA NA NA NA LTS-002 AKR7A2, ALDH4A1, CROCC, CDA) 0.38610941567128 133 0.103414666210911 0.934873219082564 4869 0.338376441253597 2 2 0 -6.79397135423621 LTS-002 NA NA NA NA LTS-002 chr1 21054636 21069157 14522 * SH2D5 NA 0 NA 0.761 1 NA NA NA NA NA LTS-002 chr1 21069158 21106416 37259 * HP1BP3 0.416982841668818 5 0.0221020361053003 0.809990248147081 121 0.268249256800657 2 1 1 -6.73712705788334 LTS-002 chr1 21106417 21180181 73765 * c(HP1BP3, EIF4G3) 0.319 1 NA 0.717284450149329 81 0.137627849652605 1 1 0 -5.78112657466364 LTS-002 chr1 21180182 24488131 3307950 * c(MIR3115, MIR4253, LOC100506801, TCEB3-AS1, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, ECE1, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LINC00339, HMGCL, HSPG2, HTR1D, ID3, LDLRAD2, WNT4, ASAP3, PNRC2, PITHD1, IL22RA1, RAP1GAP, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, USP48, NBPF3, EIF4G3, ZBTB40, CDC42) 0.354069424993591 146 0.0900512067625713 0.791118535929733 4499 0.238531670256551 1 1 0 -6.90938407714311 LTS-002 chr1 24488132 24681561 193430 * c(IFNLR1, LOC284632, GRHL3) 0 1 NA 0.821568454030474 110 0.250509442737695 1 1 0 -5.76922448095192 LTS-002 chr1 24681562 24969505 287944 * c(RCAN3AS, RCAN3, NCMAP, NIPAL3, GRHL3, STPG1) 0.237574122405251 9 0.19510324901902 0.801995513042104 433 0.27675144897753 3 3 0 -6.97237933178948 LTS-002 chr1 24969506 24969524 19 * character(0) 0.292 1 NA 0.105 1 NA NA NA NA NA LTS-002 chr1 24969525 32090725 7121201 * c(MATN1-AS1, MIR1976, MIR3917, MIR4420, PTPRU, WASF2, SRRM1, CNKSR1, CD52, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, LINC01225, PDIK1L, PAQR7, FAM76A, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, STX12, IFI6, ZNF683, CLIC4, SYF2, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HMGN2, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, NA NA NA NA NA NA NA NA NA LTS-002 ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, PIGV, MTFR1L, RSRP1, MAN1C1, SELENON, PTAFR, RHCE, RHD, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, SLC30A2, LAPTM5, AUNIP, NKAIN1, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SNHG12, FCN3, RUNX3, MAP3K6, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.354552373286193 134 0.0725245267487966 0.773765753067332 7652 0.232470859163596 1 1 0 -6.99293673901438 LTS-002 NA NA NA NA LTS-002 chr1 32090726 32092525 1800 * HCRTR1 0.316 1 NA 0.79512797664223 7 0.133877698274351 1 1 0 -5.76443036936157 LTS-002 chr1 32092526 32681070 588545 * c(MIR4254, KHDRBS1, COL16A1, DCDC2B, TXLNA, KPNA6, HCRTR1, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, CCDC28B, PTP4A2, SPOCD1) 0.238525868658834 9 0.171915515426748 0.767330736585863 1379 0.20865387349817 2 2 0 -7.23003994875819 LTS-002 chr1 32681071 32952494 271424 * c(FAM229A, DCDC2B, HDAC1, MTMR9LP, LCK, BSDC1, TMEM234, MARCKSL1, ZBTB8A, ZBTB8B, TSSK3, FAM167B, EIF3I) 0.329 1 NA 0.756373057456964 521 0.187256669963684 1 1 0 -5.76905540091113 LTS-002 chr1 32952495 34038214 1085720 * c(MIR3605, AZIN2, TMEM54, CSMD2, RNF19B, A3GALT2, ZNF362, PHC2, AK2, FNDC5, HPCA, ZBTB8OS, TRIM62, KIAA1522, RBBP4, S100PBP, ZBTB8A, ZBTB8B, ZSCAN20, SYNC, YARS) 0.388287126200688 29 0.0535027277054281 0.782991253558221 1540 0.212312674838112 1 1 0 -6.7765109571591 LTS-002 chr1 34038215 34065436 27222 * CSMD2 0.303 1 NA 0.884699733678624 61 0.347591172927719 2 2 0 -5.76446393890509 LTS-002 chr1 34065437 35223345 1157909 * c(CSMD2, HMGB4, GJB5, CSMD2-AS1, C1orf94) 0.202834325148785 9 0.177473550455022 0.854090842605995 393 0.378871929509491 3 3 0 -7.14283831086553 LTS-002 chr1 35223346 35228604 5259 * c(GJB4, GJB5) 0.371 1 NA 0.961426949597675 57 0.19992212926393 2 2 0 -5.76472558776339 LTS-002 chr1 35228605 36297221 1068617 * c(TMEM35B, SMIM12, GJB4, C1orf216, AGO4, NCDN, GJA4, GJB3, TFAP2E, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.380335292440738 8 0.1148847248332 0.788281424298928 1447 0.204278413423723 1 1 0 -6.7571652090391 LTS-002 chr1 36297222 36297452 231 * AGO4 NA 0 NA 1.26 1 NA NA NA NA NA LTS-002 chr1 36297453 36646061 348609 * c(COL8A2, AGO3, AGO4, AGO1, TRAPPC3, TEKT2, ADPRHL2, MAP7D1) NA 0 NA 1.5614462519306 775 0.385568529143653 7 NA NA -5.76588273805617 LTS-002 chr1 36646062 36646181 120 * MAP7D1 NA 0 NA 2.22 1 NA NA NA NA NA LTS-002 chr1 36646182 36752152 105971 * c(MAP7D1, THRAP3) 0.223 1 NA 2.12111811796451 19 0.506911223296638 12 12 0 -5.76441013642344 LTS-002 chr1 36752153 36773405 21253 * c(SH3D21, THRAP3) 0.171 1 NA 2.19829023084473 93 0.539434502742407 13 13 0 -5.76442772612531 LTS-002 chr1 36773406 36884701 111296 * c(OSCP1, EVA1B, SH3D21, STK40, LSM10) 0.181097175411694 2 0.037476659402887 2.53152753328506 265 0.535695965619935 15 14 1 -6.73329562143334 LTS-002 chr1 36884702 36886044 1343 * OSCP1 NA 0 NA 3.167 1 NA NA NA NA NA LTS-002 chr1 36886045 36945222 59178 * c(OSCP1, CSF3R, MRPS15) 0.109647552856496 4 0.0266895734947813 3.80323238081934 208 0.972946867033942 19 19 0 -6.73692504006689 LTS-002 chr1 36945223 37261122 315900 * CSF3R NA 0 NA 2.363 1 NA NA NA NA NA LTS-002 chr1 37261123 39304495 2043373 * c(MIR4255, MIR3659, MIR5581, SF3A3, C1orf122, MANEAL, FHL3, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, INPP5B, MTF1, UTP11, POU3F1, C1orf109, CDCA8, RRAGC, MEAF6, LINC01137, DNALI1, YRDC, SNIP1, ZC3H12A) 0.124467991408774 27 0.0352358759159887 3.22946096821992 1731 1.02901642320159 17 17 0 -6.77157034329422 LTS-002 chr1 39304496 39934465 629970 * c(GJA9-MYCBP, MACF1, MYCBP, NDUFS5, RHBDL2, RRAGC, KIAA0754, AKIRIN1) 0.158680761354925 13 0.0514892321329521 2.71016422921428 1157 0.634095626317687 18 17 1 -6.73548164201097 LTS-002 chr1 39934466 40041846 107381 * c(MACF1, BMP8A, SNORA55, PPIEL, PABPC4) NA 0 NA 2.69743214589486 205 0.763795405506592 17 NA NA -5.76442618184374 LTS-002 chr1 40041847 40092089 50243 * c(HEYL, PABPC4) 0.38 1 NA 1.3120709225385 59 0.316097403774992 5 5 0 -5.76476147049051 LTS-002 chr1 40092090 40435624 343535 * c(PPIE, HEYL, MYCL, HPCAL4, TRIT1, OXCT2, BMP8B, NT5C1A, MFSD2A) 0.386714062019856 20 0.0731752762388471 1.24953035455443 626 0.411790638641584 4 3 1 -6.74256670023587 LTS-002 chr1 40435625 43806163 3370539 * c(LOC100129924, NFYC-AS1, SLFNL1-AS1, ZMPSTE24, PPIH, CAP1, EBNA1BP2, ERMAP, TMCO2, ZNF684, TMEM125, COL9A2, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, RIMKLA, GUCA2A, GUCA2B, ZFP69, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, NFYC, YBX1, ZNF691, PPT1, HIVEP3, RLF, P3H1, SMAP2, EXO5, SLC2A1, ZFP69B, TIE1, CCDC30, C1orf50, PPCS, ZMYND12, MFSD2A, KCNQ4, RIMS3) 0.422372941959382 67 0.103242336759212 1.00975546198294 3486 0.289694305540281 3 2 1 -6.74563618801109 LTS-002 chr1 43806164 43812111 5948 * MPL NA 0 NA 1.955 1 NA NA NA NA NA LTS-002 chr1 43812112 43872245 60134 * c(MED8, SZT2, MPL, ELOVL1, CDC20) 0.225760768177671 5 0.0190341797826962 2.75964281415222 216 0.635295323500823 20 17 3 -6.73590868202806 LTS-002 chr1 43872246 43872249 4 * SZT2 NA 0 NA 1.316 1 NA NA NA NA NA LTS-002 chr1 43872250 44087725 215476 * c(SZT2, PTPRF, HYI) 0.47676100285216 11 0.0134570022327006 1.16761940829875 636 0.281883587362136 4 2 2 -11.5787378140599 LTS-002 chr1 44087726 44087802 77 * PTPRF NA 0 NA 0.903 1 NA NA NA NA NA LTS-002 chr1 44087803 62380270 18292468 * c(EFCAB14-AS1, LINC01135, KDM4A-AS1, MIR761, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4711, MIR5584, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, C1orf87, KLF17, CPT2, KNCN, MOB3C, GLIS1, CCDC24, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, NA NA NA NA NA NA NA NA NA LTS-002 LEXM, DHCR24, DIO1, DPH2, ELAVL4, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, MMACHC, ACOT11, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, GPX7, FAM151A, C1orf228, TCTEX1D4, FAM159A, IPP, JUN, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LINC01144, TACSTD2, MAGOH, MGC34796, ZYG11A, MUTYH, NASP, NFIA, NRDC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HOOK1, HSPB11, CMPK1, ATP6V0B, LURAP1, YIPF1, SPATA6, C1orf123, TTC22, RNF220, ECHDC2, FGGY, POMGNT1, PRKAA2, NDC1, DMAP1, ZSWIM5, PTPRF, RAB3B, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, ST3GAL3, STIL, SLC1A7, COA7, SLC6A9, TAL1, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, LRP8, BSND, ERI3, TMEM53, HECTD3, BEND5, ZYG11B, TM2D1, RAD54L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 FOXD2-AS1, HPDL, AGBL4, PRPF38A, PIK3R3, MKNK1, PLPP3, PTCH2, B4GALT2, EIF2B3, ARTN, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, TMEM59, IPO13, KDM4A, EFCAB14) 0.43226216154715 223 0.103016767809739 1.01885401501843 13556 0.282111320757274 3 2 1 -6.76317133815446 LTS-002 NA NA NA NA LTS-002 chr1 62380271 62545330 165060 * PATJ 0.215303951661992 2 0.00494974746830584 1.89347752074799 39 0.559109591907064 12 11 1 -6.86061942413296 LTS-002 chr1 62545331 62550150 4820 * PATJ NA 0 NA 0.89 1 NA NA NA NA NA LTS-002 chr1 62550151 71870536 9320386 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, ZRANB2-AS2, PATJ, HHLA3, UBE2U, CTH, IL23R, KANK4, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, NEGR1, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, LEPR, C1orf141, MIR101-1, MIR186, ROR1, PDE4B, PGM1, PIN1P1, L1TD1, LEPROT, RAVER2, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, USP1, DLEU2L, WDR78, WLS, ANKRD13C, NA NA NA NA NA NA NA NA NA LTS-002 SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.435052908983756 112 0.0684609813577666 1.02205757500987 5396 0.291785740432517 3 2 1 -6.80822932622399 LTS-002 NA NA NA NA LTS-002 chr1 71870537 77098803 5228267 * c(FPGT-TNNI3K, NEGR1-IT1, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.437805069163352 50 0.13160395906209 1.12315983749692 1654 0.318158551247162 4 2 2 -6.76166898130874 LTS-002 chr1 77098804 77779605 680802 * c(PIGK, AK5, ST6GALNAC5) 0.3802637878988 8 0.215038825398046 1.00006898666288 298 0.273788786405893 3 2 1 -6.74817909960177 LTS-002 chr1 77779606 78025459 245854 * AK5 0.49 1 NA 1.10527501000736 71 0.278505107618907 4 4 0 -5.76692417723624 LTS-002 chr1 78025460 91448004 13422545 * c(LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GBP4, GBP5, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, GBP6, CLCA4, USP33, ADGRL2, LRRC8B, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, AK5, GBP1, GBP2, GBP3, GNG5, ZNF326, GTF2B, LINC01140, BARHL2, CYR61, MIGA1, GBP7, UOX, GBP1P1, FLJ27354, LINC01555, GEMIN8P4, RBMXL1, SH3GLB1, ZNHIT6, GIPC2, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, NA NA NA NA NA NA NA NA NA LTS-002 ODF2L, DNASE2B, ADGRL4, LOC646626, LOC729930, TTLL7, RPF1, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.443758971715586 83 0.0762150070487543 1.00658247712721 5896 0.273305877762332 3 2 1 -6.87661945610554 LTS-002 NA NA NA NA LTS-002 chr1 91448005 91726287 278283 * ZNF644 NA 0 NA 0.626 1 NA NA NA NA NA LTS-002 chr1 91726288 92457843 731556 * c(HFM1, BRDT, TGFBR3, CDC7) 0.472463529261583 9 0.0164122244412849 0.92760509836606 491 0.295489013552768 2 1 1 -10.351491788113 LTS-002 chr1 92457844 92480009 22166 * BRDT 0.457 1 NA 0.96511527749029 29 0.26032526547065 3 3 0 -5.765106748581 LTS-002 chr1 92480010 93913894 1433885 * c(CCDC18-AS1, GLMN, DR1, MTF2, KIAA1107, EPHX4, GFI1, SNORA66, BTBD8, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, EVI5, RPAP2) 0.251972926729519 8 0.236818797516462 0.919172190782829 1245 0.236063985990523 2 2 0 -6.86304488204476 LTS-002 chr1 93913895 93964951 51057 * FNBP1L NA 0 NA 0.961 1 NA NA NA NA NA LTS-002 chr1 93964952 94334724 369773 * c(MIR760, LOC100129046, FNBP1L, BCAR3) 0.446 1 NA 1.01432808202473 243 0.279650641535883 3 3 0 -5.76468535210236 LTS-002 chr1 94334725 94334891 167 * character(0) 0.489 1 NA 0.845274290378978 5 0.130634987656447 2 2 0 -5.76443520257764 LTS-002 chr1 94334892 108247699 13912808 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3, OLFM3, CNN3, SLC44A3, LRRC39, COL11A1, TMEM56, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, F3, NTNG1, SLC35A3, ABCA4, RWDD3, GCLM, AMY2A, AMY2B, DNTTIP2, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, ABCD3, MFSD14A, ACTG1P4, MIR553, LOC729970, LOC729987, VCAM1, NA NA NA NA NA NA NA NA NA LTS-002 CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.446443681070906 85 0.0778600104835146 1.01615967564578 4220 0.275652561794046 3 2 1 -6.86386544399833 LTS-002 NA NA NA NA LTS-002 chr1 108247700 108291584 43885 * VAV3 NA 0 NA 0.695 1 NA NA NA NA NA LTS-002 chr1 108291585 109008030 716446 * c(VAV3-AS1, VAV3, NBPF4, SLC25A24, NBPF6) 0.393443234118184 4 0.0801431011794944 0.784509245877976 197 0.277426878286914 1 1 0 -6.74119381661545 LTS-002 chr1 109008031 109010133 2103 * NBPF6 NA 0 NA 1.755 1 NA NA NA NA NA LTS-002 chr1 109010134 113455316 4445183 * c(LINC01160, MIR4256, FAM212B-AS1, LAMTOR5-AS1, CEPT1, LAMTOR5, AHCYL1, CHI3L2, DDX20, HENMT1, ATXN7L2, C1orf194, DRAM2, PIFO, C1orf162, ADORA3, CSF1, CHIAP2, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, NA NA NA NA NA NA NA NA NA LTS-002 PGCP1, OVGP1, ATP5F1, ST7L, PRPF38B, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, RBM15, NBPF6, SLC16A1, SCARNA2, STXBP3, TAF13, WNT2B, WDR77, EPS8L3, DENND2D, CAPZA1, GPR61, PROK1, PSRC1, STRIP1, SLC16A4, CD53) 0.447760894384684 146 0.0846680960593569 1.01907542206217 6152 0.344461738238969 3 2 1 -6.84633365379601 LTS-002 NA NA NA NA LTS-002 chr1 113455317 114939846 1484530 * c(AP4B1-AS1, AP4B1, PHTF1, SYT6, HIPK1, AKR7A2P1, MAGI3, PTPN22, BCL2L15, TRIM33, RSBN1, OLFML3, LOC643441, DCLRE1B, SLC16A1, LRIG2) 0.42623623461164 25 0.104303835020578 0.863680016478144 1431 0.229337043550219 2 1 1 -6.77099883705197 LTS-002 chr1 114939847 116609194 1669348 * c(TSPAN2, BCAS2, DENND2C, AMPD1, NGF, NHLH2, NRAS, TRIM33, SLC22A15, SYCP1, TSHB, CSDE1, SIKE1, VANGL1, CASQ2) 0.455065934526185 47 0.0389809365396217 1.03011191940579 1456 0.295058106950304 4 2 2 -7.40117027071476 LTS-002 chr1 116609195 116609197 3 * SLC22A15 NA 0 NA 0.787 1 NA NA NA NA NA LTS-002 chr1 116609198 120536699 3927502 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, NBPF7, ATP1A1, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, TBX15, VTCN1, TRIM45, REG4, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.402944071678259 83 0.0946177424731433 0.904017457010096 3152 0.44949803114925 2 1 1 -6.74511464858217 LTS-002 chr1 120536700 120538966 2267 * NOTCH2 0.255 1 NA 0.811015847757167 47 0.159498305722082 1 1 0 -5.76448777328089 LTS-002 chr1 120538967 120927008 388042 * c(FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.35581729289522 10 0.095199439774262 0.745183173229767 76 0.272406315136628 2 2 0 -6.84789481400762 LTS-002 chr1 120927009 121313547 386539 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.922345269324877 79 0.281861604289652 2 NA NA -5.76578711969655 LTS-002 chr1 143912360 144013853 101494 * FAM72D 0.293 1 NA 0.804327855072875 5 0.316329416905858 1 1 0 -5.76495175294563 LTS-002 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.410765974364519 55 0.0554324595860366 0.97672254086895 529 0.335461914257208 3 2 1 -6.74584753861016 LTS-002 chr1 145075855 145076161 307 * c(NBPF20, PDE4DIP) 0.211 1 NA 1.0250439411462 9 0.164837040740241 3 3 0 -5.76441013758969 LTS-002 chr1 145076162 145284175 208014 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.256232040052374 15 0.0921999380229107 1.11036795744645 183 0.438858200089989 5 5 0 -6.74541002916476 LTS-002 chr1 145284176 145284883 708 * c(NBPF10, NBPF20, NOTCH2NL) 0.491 1 NA 1.37912291037448 19 2.55417140865591 6 6 0 -5.76441013858532 LTS-002 chr1 145284884 152056745 6771862 * c(LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, RIIAD1, THEM5, NBPF15, ANKRD34A, TMOD4, CERS2, NA NA NA NA NA NA NA NA NA LTS-002 HIST2H2AB, HIST2H2BC, LINGO4, NOTCH2NL, LINC01138, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.43877211639633 82 0.0799175312661345 1.0746066573653 7397 0.543281224138199 4 2 2 -6.83655715091935 LTS-002 NA NA NA NA LTS-002 chr1 152056746 152056834 89 * TCHHL1 NA 0 NA 1.117 1 NA NA NA NA NA LTS-002 chr1 152056835 152760249 703415 * c(C1orf68, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, CRCT1, TCHH, LCE3D) 0.402415220295289 19 0.180422117133341 1.21301191316665 913 0.412843032172879 5 3 2 -6.7403238790653 LTS-002 chr1 152760250 152777462 17213 * c(LCE1C, LCE1D, LCE1E) 0.42230641805622 10 0.0572080996596344 1.93948555364318 54 0.857837164809116 10 5 5 -6.73950253430407 LTS-002 chr1 152777463 156777214 3999752 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, NA NA NA NA NA NA NA NA NA LTS-002 S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, ILF2, IVL, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, LCE6A, MTX1, MUC1, NPR1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.441945521902197 163 0.0731169019115883 1.08737244422658 9546 0.281480406014786 4 2 2 -6.88852000902332 LTS-002 NA NA NA NA LTS-002 chr1 156777215 156778969 1755 * SH2D2A NA 0 NA 1.529 1 NA NA NA NA NA LTS-002 chr1 156778970 161199321 4420352 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, FCRL1, FCRL3, KLHDC9, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, LRRC71, PYHIN1, ETV3, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, OR10R2, FCRL6, CYCSP52, INSRR, PEAR1, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LY9, MNDA, ETV3L, OR10J3, NDUFS2, SUMO1P3, ATP1A2, NA NA NA NA NA NA NA NA NA LTS-002 ATP1A4, NHLH1, NIT1, NTRK1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, KIRREL, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, LOC646268, SLAMF1, SPTA1, USF1, MIR765, FCRL2, OR6N2, OR6K2, NECTIN4, FCRL5, FCRL4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, DEDD, CD5L, PIGM, IGSF8, AIM2, ADAMTS4, CD48, ARHGEF11) 0.426794607565762 137 0.0847004242731292 1.13972714931899 7205 0.333037466377016 4 2 2 -6.7428769196622 LTS-002 NA NA NA NA LTS-002 chr1 161199322 161199455 134 * TOMM40L NA 0 NA 0.717 1 NA NA NA NA NA LTS-002 chr1 161199456 161561213 361758 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, MPZ, SDHC, PCP4L1, TOMM40L, FCGR2C, NR1I3) 0.437598127459348 22 0.0526078566384013 0.999192435818272 441 0.292125409270215 2 1 1 -6.85540188207467 LTS-002 chr1 161561214 161561345 132 * FCGR2C NA 0 NA 0.553 1 NA NA NA NA NA LTS-002 chr1 161561346 161570527 9182 * FCGR2C NA 0 NA 0.348431449490959 46 0.15646010588741 0 NA NA -5.85436991823586 LTS-002 chr1 161570528 161642948 72421 * c(FCGR2B, FCGR3B, HSPA7, FCGR2C) 0.305 1 NA 0.630798869925692 112 0.225110803368999 0 0 0 -5.76603230255073 LTS-002 chr1 161642949 161642955 7 * FCGR2B NA 0 NA 0.926 1 NA NA NA NA NA LTS-002 chr1 161642956 172381662 10738707 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-002 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.429205672110165 165 0.0961602332860727 1.12191102145736 7031 0.335796759087609 4 2 2 -6.76982430994967 LTS-002 NA NA NA NA LTS-002 chr1 172381663 172381668 6 * c(DNM3, PIGC) NA 0 NA 0.874 1 NA NA NA NA NA LTS-002 chr1 172381669 175097744 2716076 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.411067778745889 17 0.151574142215073 1.04429990826835 1959 0.277661162027458 3 2 1 -6.7408724047603 LTS-002 chr1 175097745 179019579 3921835 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TNN, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, KIAA0040, FAM20B) 0.453868738992369 29 0.0373715863722735 1.20950184214019 1718 0.420403115490732 4 2 2 -7.32166865273672 LTS-002 chr1 179019580 179023613 4034 * FAM20B NA 0 NA 0.913 1 NA NA NA NA NA LTS-002 chr1 179023614 211745968 32722355 * c(MIR181A1HG, GM140, GS1-279B7.1, MIR1231, MIR1278, MIR548F1, ZBED6, MIR4260, MIR3121, PCAT6, LHX4-AS1, MIR4735, MIR5191, RNU6-72P, ARPC5, PRG4, STX6, TIMM17A, LRRN2, IVNS1ABP, KDM5B, CFHR4, CFHR3, OCLM, IL24, CHI3L1, CHIT1, SLC26A9, TSEN15, FAM129A, AXDND1, ATP6V1G3, ZNF648, TEDDM1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, FAM163A, MFSD4A, NA NA NA NA NA NA NA NA NA LTS-002 PM20D1, SHISA4, CTSE, CD55, DENND1B, TDRD5, TOR1AIP2, DHX9, EIF2D, ELF3, FLJ23867, ELK4, F13B, PLEKHA6, KIF21B, NMNAT2, NFASC, COLGALT2, RGL1, CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, ASPM, TOR1AIP1, OPTC, ABL2, DIEXF, GLUL, LINC00303, LEMD1-AS1, LOC284578, LOC284581, LOC284648, SMG7-AS1, GPR25, UBE2T, IL19, CFH, CFHR1, CFHR2, MR1, HSD11B1, BRINP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RD3, KCNT2, RGSL1, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KISS1, LINC00272, C1orf53, TMEM81, LAD1, LAMB3, LAMC1, LAMC2, NA, APOBEC4, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, RGS21, LOC440704, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, NCF2, ATP2B4, G0S2, IL20, GLRX2, ADIPOR1, IER5, CDK18, PDC, UCHL5, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLA2G4A, PLXNA2, SWT1, LAX1, C1orf27, KLHDC8A, ETNK2, AVPR1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LINC00862, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, LHX9, CAMK1G, SERTAD4-AS1, PTGS2, QSOX1, KIAA1614, PTPN7, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RNPEP, MGAT4EP, TOR3A, MIR205HG, RGS18, NUCKS1, ASCL5, SRGAP2C, SNRPE, SOAT1, TROVE2, SNORA77, CNTN2, TNNI1, TNNT2, TPR, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1E, CACNA1S, NPHS2, BTG2, C1orf116, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CDC73, EDEM3, TRAF3IP3, NPL, CFHR5, C1orf21, SHCBP1L, TRMT1L, NUAK2, DDX59, RASSF5, HMCN1, FCAMR, ACBD6, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, RGS8, SLC45A3, B3GALT2, RAB29, NAV1, LHX4, IGFN1, XPR1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, CEP350, ZC3H11A, SMG7, TMCC2, FAM20B, KIF14) 0.421556694154047 542 0.105924108698872 1.11197258606306 24137 0.318428680007077 4 2 2 -6.90744503106778 LTS-002 NA NA NA NA LTS-002 chr1 211745969 215256757 3510789 * c(MIR3122, LINC00538, CENPF, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, KCNK2, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.440759451523838 30 0.0828619957811033 1.04932456231986 2143 0.289039044795721 3 2 1 -6.82544650874117 LTS-002 chr1 215256758 215259677 2920 * KCNK2 NA 0 NA 1.405 1 NA NA NA NA NA LTS-002 chr1 215259678 220089287 4829610 * c(LINC00210, LYPLAL1, SPATA17, ESRRG, RNU5F-1, KCNK2, RRP15, KCTD3, GPATCH2, SLC30A10, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.425321574509103 23 0.105050467826249 1.20779443736521 1554 0.34503412800868 5 3 2 -6.79728301172283 LTS-002 chr1 220089288 220091551 2264 * c(RNU5F-1, SLC30A10) NA 0 NA 1.105 1 NA NA NA NA NA LTS-002 chr1 220091552 226562112 6470561 * c(MIR320B2, MIR4742, BPNT1, LEFTY1, DUSP10, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, EPRS, FBXO28, RAB3GAP2, RNU5F-1, LIN9, CNIH4, PYCR2, H3F3A, HLX, MIA3, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, H3F3AP4, NVL, MARC2, SUSD4, SLC30A10, IARS2, ENAH, ACBD3, MARC1, AIDA, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, MIXL1, DISP1, DEGS1, TAF1A, NA NA NA NA NA NA NA NA NA LTS-002 TMEM63A) 0.421615604909658 84 0.107513424290894 1.0654465398245 4830 0.318031966589793 3 2 1 -6.79794600734173 LTS-002 NA NA NA NA LTS-002 chr1 226562113 226567008 4896 * PARP1 0.481 1 NA 1.10901525756149 17 0.287725985352486 4 4 0 -5.76444874030378 LTS-002 chr1 226567009 230417408 3850400 * c(NA, MIR3620, MIR4666A, MIR5008, SPHAR, SNAP47, CCSAP, MRPL55, HIST3H2BB, PARP1, RNF187, IBA57, ABCB10, GALNT2, TAF5L, GUK1, ZNF678, PRSS38, ITPKB, ARF1, STUM, ZNF847P, TRIM17, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, JMJD4, WNT9A, C1orf35, TRIM11, HIST3H3, OBSCN, CDC42BPA, WNT3A, HIST3H2A, URB2) 0.446830949987559 140 0.0535964417795489 1.09242755671244 3884 0.281364250755581 4 2 2 -6.98750718881633 LTS-002 chr1 230417409 230417664 256 * GALNT2 0.417 1 NA 1.35595004359403 7 0.234593569513623 6 6 0 -5.76441183398376 LTS-002 chr1 230417665 236899015 6481351 * c(LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, CAPN9, LYST, C1orf131, EDARADD, SLC35F3, B3GALNT2, EXOC8, LOC149373, AGT, COG2, RBM34, GALNT2, DISC2, DISC1, GNG4, IRF2BP2, FAM89A, KCNK1, COA6, LGALS8, TRIM67, NID1, ARID4B, EGLN1, MAP10, HEATR1, ERO1B, SIPA1L2, SNRPD2P2, ARV1, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, TTC13, PGBD5, PCNX2, NA NA NA NA NA NA NA NA NA LTS-002 SPRTN, NTPCR, GNPAT, MLK4, C1orf198, ACTN2, GGPS1, TOMM20) 0.417692682221247 171 0.0891986026352112 1.06459812893991 4947 0.314010405122061 3 2 1 -6.79465550825958 LTS-002 NA NA NA NA LTS-002 chr1 236899016 248040925 11141910 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, C1orf229, OR11L1, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, NA NA NA NA NA NA NA NA NA LTS-002 RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.424362671457793 105 0.0981054275176705 1.14359020007401 5529 0.37679212997281 4 2 2 -6.73725780348558 LTS-002 NA NA NA NA LTS-002 chr1 248040926 248041024 99 * TRIM58 NA 0 NA 1.321 1 NA NA NA NA NA LTS-002 chr1 248041025 248129240 88216 * c(TRIM58, OR2L13, OR2W3, OR2T8, OR2L8, OR2AK2) 0.440638206102581 9 0.0221754368615367 1.38506620430384 95 0.504551412305599 6 3 3 -7.3773195479924 LTS-002 chr1 248129241 248224569 95329 * c(OR2L2, OR2L1P, OR2L13, OR2AK2, OR2L3, OR2L5) 0.217 1 NA 1.38950831697117 77 0.421663097677024 6 6 0 -5.76441015913403 LTS-002 chr1 248224570 248737615 513046 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T4, OR2T6, OR2M4, OR2T1, OR2L13, OR2T3, OR2T29, OR2M1P, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5) 0.296796503337829 13 0.138857240838688 1.38961504306045 352 0.62764153855868 7 6 1 -6.73863785738284 LTS-002 chr1 248737616 248737628 13 * OR2T34 NA 0 NA 0.47 1 NA NA NA NA NA LTS-002 chr1 248737629 248790545 52917 * c(OR2T34, OR2T10, OR2T11) 0.3 1 NA 0.561818153138554 60 0.736594853722909 0 0 0 -5.76589490048929 LTS-002 chr1 248790546 248801482 10937 * character(0) NA 0 NA 5.191 1 NA NA NA NA NA LTS-002 chr1 248801483 249144419 342937 * c(MIR3124, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.361698942544577 16 0.135278462809126 1.16194483421544 245 0.856616132559615 5 4 1 -6.73765091737947 LTS-002 chr1 249144420 249214134 69715 * c(PGBD2, ZNF692) NA 0 NA 1.02899285939426 145 0.227049710787269 3 NA NA -5.76442659778998 LTS-002 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.34 1 NA 0.931798351366891 85 0.249409845171251 2 2 0 -5.7661740391452 LTS-002 chr2 218387 668533 450147 * c(TMEM18, SH3YL1, FAM150B, ACP1) 0.408884894799168 8 0.0726341124108658 0.978504986923531 228 0.241513296939001 3 2 1 -6.74311168348111 LTS-002 chr2 668534 3381485 2712952 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.333911429466634 18 0.0557576748139088 1.24088579931405 787 0.340715584576322 5 4 1 -6.80909916420279 LTS-002 chr2 3381486 3381555 70 * TSSC1 NA 0 NA 0.664 1 NA NA NA NA NA LTS-002 chr2 3381556 61648551 58266996 * c(SNORA70B, MIR216B, SLC8A1-AS1, OST4, LINC01126, LINC01119, ARHGEF33, LOC100271832, LOC100288911, MIR1301, BRE-AS1, SNORA80B, MIR4261, MIR4263, MIR3125, MIR4262, MIR3682, GTF3C2-AS1, LOC100505716, CEBPZOS, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4765, MIR4757, MIR4429, MIR4432, MIR548AD, LINC00570, PREB, LRPPRC, PDIA6, RMDN2-AS1, CEBPZ, MYCNOS, CENPA, CDC42EP3, CGREF1, SIX2, RAB10, ADCY3, NA NA NA NA NA NA NA NA NA LTS-002 GPR75, YWHAQ, GTF2A1L, STON1, EMILIN1, CFAP36, GPN1, CCDC85A, KLHL29, PPP1R21, CMPK2, MBOAT2, C2orf73, CIB4, CLHC1, PLEKHH2, OSR1, TTC32, ZNF513, GALM, TMEM178A, C2orf50, PQLC3, AHSA2, LINC01105, TCF23, GAREM2, PUS10, PLB1, MYADML, FAM84A, RMDN2, GDF7, CYP1B1, ADGRF3, OXER1, FAM179A, DDX1, UBXN2A, KCNG3, DNMT3A, DTNB, E2F6, CYS1, KRTCAP3, EPAS1, EFEMP1, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, WDR43, LPIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PSME4, PUM2, RHOQ, HAAO, FOSL2, NTSR2, PRKD3, ALK, SPDYA, ATP6V1C2, RNASEH1, FSHR, FTH1P3, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, IFT172, GCKR, SNORD53, ERLEC1, EML4, LINC00486, C2orf61, DNAJC5G, IAH1, FLJ33534, CYP1B1-AS1, STON1-GTF2A1L, TRIB2, MSH6, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, EHD3, HPCAL1, FOXN2, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, LOC339803, C2orf74, MSGN1, CDKL4, PRORSD1P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GEN1, C2orf48, PFN4, FAM228B, LOC375196, KCNF1, KCNK3, KCNS3, KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, C2orf71, LOC388942, TMEM247, LINC01118, TSPYL6, PTRHD1, SULT6B1, LHCGR, LOC400940, LINC00487, LINC00954, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LTBP1, MIR216A, MIR217, EPCAM, MATN3, MPV17, CAPN14, MSH2, MTIF2, MYCN, CHAC2, ODC1, ITSN2, MEMO1, TRAPPC12, ASB3, CRIM1, DNAJC27, ATRAID, NBAS, DYNC2LI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SF3B6, YPEL5, CPSF3, PEX13, VIT, PIGF, BCL11A, POMC, ATAD2B, HEATR5B, TMEM214, PPM1B, PPM1G, SLC35F6, PPP1CB, TRMT61B, FANCL, SRBD1, ASXL2, ADI1, NDUFAF7, TTC27, SLC30A6, CCDC88A, PRKCE, ALLC, EIF2AK2, KCNK12, DPYSL5, RPL23AP32, RTN4, TRIM54, TTC7A, PPP4R3B, BIRC6, KIDINS220, MTA3, WDR35, RDH14, NLRC4, REL, AGBL5, LDAH, RPS7, RPS27A, RRM2, SDC1, THADA, RBKS, ATL2, ABCG5, ABCG8, SRSF7, HS1BP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LOC645949, FNDC4, PAPOLG, SIX3, SLC3A1, FAM228A, SLC8A1, SOS1, SOX11, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, ADAM17, SNORD92, MIR558, MIR559, TSSC1, LINC01249, LOC728730, C1GALT1C1L, RAD51AP2, DNAJC27-AS1, MORN2, UCN, VRK2, VSNL1, XDH, SLC30A3, COLEC11, CAD, CENPO, GALNT14, CCDC121, SMC6, CLIP4, CAMKMT, GEMIN6, NOL10, FBXO11, WDCP, CALM2, THUMPD2, FAM49A, LBH, C2orf16, YIPF4, ZNF512, KIAA1841, KLF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 DPY30, ABHD1, MAP4K3, SELENOI, NCOA1, PNPT1, ASAP2, SLC5A6, EIF2B4, TAF1B, MCFD2, ATP6V1E2, DHX57, PKDCC, RSAD2, COX7A2L, CAPN13, ITGB1BP1, DRC1, HNRNPLL, NT5C1B, NRXN1, OTOF, CRIPT, ROCK2, TP53I3, MRPL33, BRE, PREPL, FEZ2, SOCS5, GREB1, USP34, LAPTM4A, RNF144A, SNX17, ACYP2, SUPT7L) 0.336543199234959 656 0.0858474531223632 1.11258994907191 30898 0.450108292649175 4 3 1 -7.06462474937635 LTS-002 NA NA NA NA LTS-002 chr2 61648552 61649018 467 * USP34 NA 0 NA 1.05 1 NA NA NA NA NA LTS-002 chr2 61649019 70781005 9131987 * c(SNORA36C, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, COMMD1, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339807, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, NA NA NA NA NA NA NA NA NA LTS-002 RAB1A, GMCL1, LOC644838, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, FAM136A, USP34, SERTAD2, ARHGAP25) 0.35379340351395 78 0.0764817845631453 1.05165845521733 4740 0.515977679591113 3 3 0 -6.85693913565949 LTS-002 NA NA NA NA LTS-002 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.333 1 NA NA NA NA NA LTS-002 chr2 70781031 73496102 2715072 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.32096328182153 45 0.0942861269613602 1.15022739844446 2617 0.331852950600369 4 4 0 -6.80853643107727 LTS-002 chr2 73496103 74881727 1385625 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, SLC4A5, RTKN, TTC31, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.321019831800523 51 0.0681053163684529 1.05732453605236 2779 0.29174605959766 3 3 0 -6.74281485822005 LTS-002 chr2 74881728 74882302 575 * SEMA4F NA 0 NA 1.883 1 NA NA NA NA NA LTS-002 chr2 74882303 80835481 5953179 * c(SNAR-H, MIR4264, MIR5000, SEMA4F, REG3G, CTNNA2, HK2, LRRTM1, REG3A, POLE4, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.349363990915482 27 0.0548896588063238 1.2014366719049 1052 0.331424275048933 5 4 1 -6.82888885128612 LTS-002 chr2 80835482 80846182 10701 * CTNNA2 NA 0 NA 0.994 1 NA NA NA NA NA LTS-002 chr2 80846183 87085504 6239322 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.360260596651614 76 0.0646080218798569 1.08667007393688 3187 0.274527775317916 4 3 1 -6.9551727285389 LTS-002 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.642 1 NA NA NA NA NA LTS-002 chr2 87092741 87407206 314466 * c(ANAPC1P1, LOC285074, RMND5A) NA 0 NA 0.565199985007194 81 0.383318733216325 0 NA NA -5.79444041989443 LTS-002 chr2 87407207 87408164 958 * RMND5A NA 0 NA 0.317 1 NA NA NA NA NA LTS-002 chr2 87408165 87424347 16183 * RMND5A NA 0 NA 0.370402885746842 57 0.398648376637217 0 NA NA -5.78460449115872 LTS-002 chr2 87424348 87424349 2 * RMND5A NA 0 NA 0.788 1 NA NA NA NA NA LTS-002 chr2 87424350 89953068 2528719 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.352538429327253 21 0.0900823697142417 1.18145577245066 798 0.540005466616541 5 4 1 -6.758964859202 LTS-002 chr2 89953069 89975746 22678 * character(0) NA 0 NA 0.77 1 NA NA NA NA NA LTS-002 chr2 89975747 91809385 1833639 * LOC654342 0.343709868295346 2 0.0127279220613578 0.865060490063468 129 1.0573969933408 5 4 1 -7.17726653907563 LTS-002 chr2 91809386 91944161 134776 * LOC654342 0.325242535583062 19 0.0635078850379093 1.32893104223956 76 0.795302208807025 6 5 1 -6.73361263374984 LTS-002 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.5326305930087 7 0.333433365942597 7 NA NA -5.76442163728881 LTS-002 chr2 95537183 95537605 423 * c(TEKT4, LOC442028) 0.045 1 NA 1.24284365147129 9 0.210412161667946 5 5 0 -5.76441244029806 LTS-002 chr2 95537606 115919799 20382194 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, TRIM43, TMEM182, COX5B, TTL, CKAP2L, CBWD2, TEKT4, LINC01102, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, NA NA NA NA NA NA NA NA NA LTS-002 DUSP2, FOXD4L1, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, PSD4, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KCNIP3, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, MAL, ASTL, LINC01191, LOC442028, SULT1C3, NPAS2, NPHP1, COA5, FAHD2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, IL36G, STARD7, DPP10, ANKRD36B, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, MRPS5, SOWAHC, TRIM43B, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, ZNF2, PAX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, SLC35F5, TSGA10, LMAN2L, POLR1B, CHCHD5, NCK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, ZNF514, TMEM87B, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.34374897987008 265 0.0718639754017887 1.09312023042715 12973 0.7599991126188 3 3 0 -6.88170975150242 LTS-002 NA NA NA NA LTS-002 chr2 115919800 137872755 21952956 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DARS, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, LOC389033, LINC01120, NA NA NA NA NA NA NA NA NA LTS-002 LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, TMEM185B, SAP130, MZT2B, MAP3K19, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, DDX18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.331958825811576 156 0.0725164717034752 1.12951014993598 8717 0.32917858131805 4 4 0 -6.97801319434147 LTS-002 NA NA NA NA LTS-002 chr2 137872756 142889274 5016519 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.340354921322128 22 0.0909540224461469 1.25543666708928 987 0.411186028443021 5 4 1 -6.74638093405537 LTS-002 chr2 143642881 170366300 26723420 * c(TANK, LOC100144595, ZEB2-AS1, SNORA70F, LOC100506124, TTC21B-AS1, LY75-CD302, MIR4774, MIR4785, MIR4773-1, MIR4773-2, CERS6-AS1, DHRS9, PSMD14, STAM2, KLHL41, TBR1, GALNT5, FMNL2, GALNT13, NOSTRIN, XIRP2, BBS5, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, SLC38A11, WDSUB1, UPP2, DPP4, FAP, COBLL1, PLA2R1, CERS6, GCA, GALNT3, EPC2, ARL5A, GCG, MMADHC, STK39, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, NA NA NA NA NA NA NA NA NA LTS-002 KIF5C, RND3, TEX41, LRP2, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, SPC25, ERMN, G6PC2, RBMS1, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, TTC21B, CSRNP3, PKP4, TANC1, ABCB11, B3GALT1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.348395808396912 181 0.0714454605745504 1.12837805960592 11395 0.377492906452707 4 3 1 -6.91088806035899 LTS-002 NA NA NA NA LTS-002 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 1.048 1 NA NA NA NA NA LTS-002 chr2 170366321 179369543 9003223 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, NA NA NA NA NA NA NA NA NA LTS-002 PHOSPHO2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.346387313710591 131 0.0832497300731474 1.06628152602358 6462 0.347143766527694 3 3 0 -6.86047190674473 LTS-002 NA NA NA NA LTS-002 chr2 179369544 179476845 107302 * c(MIR548N, TTN-AS1, PLEKHA3, TTN) 0.357 1 NA 1.22162672109618 1407 0.193307125338837 5 5 0 -5.76680588850701 LTS-002 chr2 179476846 183948321 4471476 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, TTN, SESTD1) 0.37619154789758 38 0.0792991706370684 1.12004556792888 3427 0.259042743606953 4 3 1 -6.76102629845109 LTS-002 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.309 1 NA NA NA NA NA LTS-002 chr2 183951766 189908038 5956273 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.329478085502798 40 0.0453436946115515 1.20044926208789 2121 0.748679693084993 6 5 1 -6.87641016663264 LTS-002 chr2 189908039 189909882 1844 * COL5A2 NA 0 NA 0.812 1 NA NA NA NA NA LTS-002 chr2 189909883 203826688 13916806 * c(SNORD11B, LOC100130452, NEMP2, MIR3129, LOC100507140, HSPE1-MOB4, KIAA2012, OSGEPL1-AS1, CLK1, COL5A2, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, ANKAR, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, SLC40A1, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, ASNSD1, MFSD6, STRADB, NA NA NA NA NA NA NA NA NA LTS-002 WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, OSGEPL1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, WDR75, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, ORMDL1, BZW1) 0.327363170264883 94 0.0992487066176235 1.05653426332408 8764 0.314286548929783 3 3 0 -6.81540273068918 LTS-002 NA NA NA NA LTS-002 chr2 203826689 216300869 12474181 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA LTS-002 NDUFS1, INO80D, CYP20A1, PTH2R, ZDBF2, BARD1, RPE, SNORA41, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.329890114355925 135 0.0927049564760368 1.14513905160495 7165 0.312808852514755 4 4 0 -6.85687745769776 LTS-002 NA NA NA NA LTS-002 chr2 216808038 242836535 26028498 * c(LOC100129175, PP14571, LOC100286922, MIR1471, BOK-AS1, MIR3131, MIR4268, MIR3132, MIR4269, UBE2F-SCLY, FARSB, ABCB6, MIR4439, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, MIR5702, MIR5703, ARPC2, ARL4C, RAMP1, SPEG, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, STK11IP, MOGAT1, AGAP1, TWIST2, COL4A3, COL4A4, COL6A3, DIS3L2, NEU4, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, FBXO36, MTERF4, AAMP, UBE2F, NA NA NA NA NA NA NA NA NA LTS-002 CRYBA2, OTOS, COPS9, OR6B3, LOC150935, PKI55, LINC01107, LOC151174, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, CYP27A1, DAW1, C2orf57, DES, DTYMK, AGXT, TIGD1, LOC200772, EPHA4, ACSL3, PASK, ATG4B, OBSL1, DNPEP, SH3BP4, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, SNED1, GIGYF2, TRAF3IP1, GBX2, CNPPD1, STK36, GPC1, RTP5, RUFY4, DUSP28, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GPR35, GMPPA, HDLBP, AGFG1, DNAJB2, HTR2B, ESPNL, SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, RBM44, AQP12A, KCNJ13, KLHL30, RESP18, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, MIR153-1, MIR26B, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, MIR375, SMARCAL1, ANO7, PAX3, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, SERPINE2, PRKAG3, UGT1A10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, FEV, PID1, ATG16L1, PPP1R7, ANKZF1, USP40, HJURP, HES6, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, ACKR3, PSMD1, RNPEPL1, PTMA, MARCH4, WDFY1, NYAP2, USP37, PTPRN, CTDSP1, SNORD20, RPL37A, BCS1L, SAG, CCL20, GAL3ST2, TMBIM1, RAB17, RNF25, LOC643387, PRR21, LOC646736, PRSS56, COPS7B, SLC4A3, MRPL44, AQP12B, SNORA75, LOC654841, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SLC11A1, BOK, SP100, SPP2, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, D2HGDH, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, TRPM8, ATG9A, MLPH, FAM134A, GLB1L, CHPF, IQCA1, NHEJ1, FAM124B, TM4SF20, C2orf54, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ILKAP, ITM2C, RHBDD1, ING5, CUL3, PLCD4, MGC16025, DGKD, STK16, PER2, CDK5R2, CNOT9, LRRFIP1, TMEM169, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TTLL4, HDAC4, FARP2) 0.342924304499475 530 0.0782280562875418 1.10731616745716 22033 0.423654149778568 4 3 1 -7.00067954772295 LTS-002 NA NA NA NA LTS-002 chr2 242836536 243037214 200679 * LOC728323 NA 0 NA 1.09344705749619 25 0.133084872669035 4 NA NA -5.77946957915644 LTS-002 chr3 239351 361508 122158 * CHL1 0.42 1 NA 0.936917121471458 9 0.192121127879725 2 2 0 -5.76718583068468 LTS-002 chr3 361509 4752134 4390626 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.452521795047942 20 0.0371885664376057 1.06392936086375 1159 0.303437930138537 4 2 2 -7.40713125556431 LTS-002 chr3 4752135 5212185 460051 * c(EGOT, BHLHE40-AS1, ITPR1, ARL8B, BHLHE40) 0.412310281403742 3 0.0709459888459759 0.880486504852666 296 0.190299956947689 2 1 1 -6.7396476112641 LTS-002 chr3 5212186 5212191 6 * ARL8B NA 0 NA 1.126 1 NA NA NA NA NA LTS-002 chr3 5212192 8809157 3596966 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, ARL8B, CAV3, EDEM1) 0.442053895528801 31 0.092561818924331 1.10409547181015 716 0.346556269550278 4 2 2 -6.80395650168482 LTS-002 chr3 8809158 8809163 6 * OXTR NA 0 NA 0.693 1 NA NA NA NA NA LTS-002 chr3 8809164 9957898 1148735 * c(SRGAP3-AS3, ARPC4-TTLL3, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SETD5, RAD18, CIDEC, MTMR14, BRPF1, JAGN1, CAMK1, SRGAP3) 0.461881652027879 44 0.0756260271539282 0.992516904569621 1840 0.2572674746509 3 2 1 -7.00616560004265 LTS-002 chr3 9957899 9958767 869 * c(IL17RE, CIDEC, IL17RC) 0.37 1 NA 0.742668588346223 5 0.201244130349186 1 1 0 -5.76444218434544 LTS-002 chr3 9958768 10369180 410413 * c(GHRLOS, PRRT3-AS1, FANCD2OS, CIDECP, FANCD2, PRRT3, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, VHL, CRELD1, LINC00852, IL17RC, TATDN2) 0.216763514451059 9 0.20409338821018 0.941839872937282 1095 0.261526456592063 3 3 0 -6.91027734493662 LTS-002 chr3 10369181 10382111 12931 * ATP2B2 0.483 1 NA 0.974011787843155 59 0.203217470095358 3 3 0 -5.7648874341388 LTS-002 chr3 10382112 35779743 25397632 * c(MIR885, MKRN2OS, FGD5P1, PDCD6IP, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, SLC6A1-AS1, OSBPL10-AS1, CRTAP, ATG7, ARPP21, CMTM7, OSBPL10, LRRC3B, GALNT15, CCR4, KCNH8, TRIM71, CHCHD4, METTL6, TAMM41, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, FGD5, DAZL, STT3B, FBLN2, CAND2, CLASP2, GPD1L, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, FBXL2, NA NA NA NA NA NA NA NA NA LTS-002 CNOT10, SUSD5, HACL1, GLB1, LSM3, RBMS3, NKIRAS1, LINC00692, LINC00606, LINC00620, DPH3, HRH1, LOC339862, GADL1, ZNF860, COL6A4P1, TPRXL, VENTXP7, ATP2B2, DYNC1LI1, CCDC174, PPARG, CMTM6, OXSM, TMEM40, NGLY1, RAB5A, RAF1, RARB, RPL15, RPL32, SATB1, RBSN, AZI2, TMPPE, MRPS25, THRB-AS1, LINC00693, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TGFBR2, THRB, TIMP4, TOP2B, NR2C2, UBE2E1, UBE2E2, UBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 WNT7A, XPC, TMEM43, ZNF385D, HDAC11, TSEN2, GRIP2, COLQ, EOMES, C3orf20, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, VGLL4, TBC1D5, IQSEC1, NR1D2) 0.443952006043224 240 0.0823883665290831 0.995579125327874 10677 0.362665017101808 3 2 1 -6.92180680616344 LTS-002 NA NA NA NA LTS-002 chr3 35779744 36873669 1093926 * c(ARPP21, MIR128-2, STAC, DCLK3, TRANK1) 0.472888080077919 12 0.015036067748362 1.17729400289161 335 0.300117877815539 4 2 2 -10.7636653672417 LTS-002 chr3 36873670 36873674 5 * TRANK1 NA 0 NA 0.824 1 NA NA NA NA NA LTS-002 chr3 36873675 43640143 6766469 * c(ACVR2B-AS1, KRBOX1, SNRK-AS1, CCDC13-AS1, CTDSPL, EIF1B, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SNRK, SLC25A38, ULK4, ANO10, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, NA NA NA NA NA NA NA NA NA LTS-002 FAM198A, VIPR1, POMGNT2, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.445035378711987 130 0.0759291638625491 1.01942464641717 6467 0.325549267617419 3 2 1 -6.85404905903813 LTS-002 NA NA NA NA LTS-002 chr3 43640144 43641881 1738 * ANO10 NA 0 NA 0.897 1 NA NA NA NA NA LTS-002 chr3 43641882 46623760 2981879 * c(LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2, ZNF502) 0.429845110166114 70 0.123045472077431 0.967766204770558 3720 0.264206667605441 3 2 1 -6.82917848821094 LTS-002 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.171 1 NA NA NA NA NA LTS-002 chr3 46623907 47059256 435350 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.464735510804196 20 0.0375407147395717 1.11602497724282 931 0.450083761178924 4 2 2 -7.593978648091 LTS-002 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.823 1 NA NA NA NA NA LTS-002 chr3 47061216 54420022 7358807 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, NA NA NA NA NA NA NA NA NA LTS-002 KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, GNL3, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, TNNC1, UBA7, USP4, UQCRC1, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, CCDC51, WDR82, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.441136299444501 163 0.0947431548674023 1.00756721184686 14885 0.255325661727471 3 2 1 -6.81271245101304 LTS-002 NA NA NA NA LTS-002 chr3 54420023 54420665 643 * CACNA2D3 NA 0 NA 1.19 1 NA NA NA NA NA LTS-002 chr3 54420666 55500895 1080230 * c(CACNA2D3-AS1, CACNA2D3, LRTM1, WNT5A, ESRG) 0.452457748311293 9 0.0296647939483826 1.20586124893574 257 0.315344168172705 4 2 2 -7.52763851959392 LTS-002 chr3 55500896 57903068 2402173 * c(MIR3938, ARHGEF3-AS1, ASB14, DNAH12, PDE12, DENND6A, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, IL17RD, ERC2-IT1, WNT5A, SLMAP, HESX1) 0.430913199622612 51 0.09418520345054 0.955084385770611 2084 0.245091569555287 2 1 1 -6.82320492235474 LTS-002 chr3 57903069 68594346 10691278 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, RPP14, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, DNASE1L3, C3orf67, KCTD6, FHIT, FLNB, LRIG1, LINC00698, FAM19A1, PDHB, PXK, FEZF2, ADAMTS9, ABHD6, C3orf14, PTPRG, ATXN7, MIR548A2, SLMAP, THOC7, ACOX2, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.444287918475357 81 0.0783367040251941 1.05354157773593 3574 0.288704380010611 3 2 1 -6.90131942251123 LTS-002 chr3 68594347 68594351 5 * FAM19A1 NA 0 NA 0.64 1 NA NA NA NA NA LTS-002 chr3 68594352 74312179 5717828 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.441402811294234 56 0.110509440156198 0.98848582935925 1988 0.302163656496282 3 2 1 -6.82633181381828 LTS-002 chr3 74312180 74413676 101497 * CNTN3 0.452 2 0 1.18313315689835 94 0.294579759148714 0 0 0 -Inf LTS-002 chr3 74413677 75679988 1266312 * c(MIR1324, CNTN3, FAM86DP) 0.233 1 NA 1.15641754770826 53 0.361480738606034 4 4 0 -5.76486722473716 LTS-002 chr3 75679989 75986794 306806 * c(ZNF717, MIR1324, ROBO2) 0.332803553836766 199 0.0935230076871701 1.28907287106619 370 0.587014710063391 6 5 1 -6.7416591880439 LTS-002 chr3 75986795 75986813 19 * ROBO2 0.467 1 NA 1.603 1 NA NA NA NA NA LTS-002 chr3 75986814 78719493 2732680 * c(ROBO1, ROBO2) 0.471551475071056 6 0.024744022847279 1.13031382747445 364 0.309732279603867 4 2 2 -8.80788748654381 LTS-002 chr3 78719494 89530057 10810564 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.450284173912925 10 0.0409720772125494 1.0396319627119 1202 0.26325209537664 3 2 1 -7.26647266435296 LTS-002 chr3 89530058 90283666 753609 * EPHA3 NA 0 NA 1.15939135043106 49 0.311536824512305 4 NA NA -5.76501924417076 LTS-002 chr3 93591838 93593119 1282 * PROS1 0.366 1 NA 1.32982507659197 25 0.440134683932089 6 6 0 -5.76441787835844 LTS-002 chr3 93593120 103243064 9649945 * c(ZBTB11-AS1, MTHFD2P1, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LOC152225, ARL13B, DHFR2, GABRR3, LINC00879, ABI3BP, OR5K1, OR5H1, ZBTB11, GPR15, EPHA6, PDCL3P4, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, IMPG2, TRMT10C, TMEM45A, TBC1D23, PROS1, CLDND1, NIT2, PCNP, SENP7, RPL24, NSUN3, NFKBIZ, TMEM30CP, OR5H6, OR5H2, CEP97, OR5AC2, NA NA NA NA NA NA NA NA NA LTS-002 ARL6, CMSS1, MINA, ADGRG7, NXPE3, TOMM70) 0.382990775837669 66 0.102815657565176 1.20817309682185 3879 0.357183170571155 4 3 1 -6.85641094747566 LTS-002 NA NA NA NA LTS-002 chr3 105085707 108639324 3553618 * c(LINC00882, HHLA2, LINC00635, ALCAM, MYH15, LINC00636, DUBR, TRAT1, IFT57, BBX, KIAA1524, RETNLB, CCDC54, CBLB, CD47, GUCA1C, DZIP3) 0.163825121329738 3 0.270777276249934 1.09767042941252 1487 0.317545284140403 4 4 0 -6.89468630399844 LTS-002 chr3 108639325 111298145 2658821 * c(PVRL3-AS1, CD96, DPPA2, NECTIN3, MORC1, FLJ22763, LINC01205, DPPA4, LINC00488, GUCA1C) 0.447 1 NA 1.14251061868495 509 1.32160495384612 4 4 0 -5.76441967634988 LTS-002 chr3 111298146 139279294 27981149 * c(FAM86JP, LOC100129550, ZBTB20-AS1, MIR548I1, IGSF11-AS1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4796, MIR4788, MIR4446, COX17, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, CFAP44-AS1, ALDH1L1-AS1, CD96, STAG1, POLQ, ALDH1L1, PDIA5, TOPBP1, ADCY5, FSTL1, MRPL3, MGLL, TXNRD3, OSBPL11, LRRC58, CPNE4, CCDC58, CD200R1, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ADPRH, CSTA, DTX3L, CCDC80, BTLA, NA NA NA NA NA NA NA NA NA LTS-002 ROPN1B, C3orf22, SPICE1, NUDT16P1, IGSF11, C3orf30, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, DRD3, DZIP1L, ALG1L, HACD2, TIGIT, EPHB1, USF3, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZDHHC23, NUP210P1, COL6A5, PLCXD2, GCSAM, ANAPC13, ARMC8, NEPRO, GAP43, ZBTB20, GATA2, FAM162A, SEC22A, NPHP3, ATP2C1, GOLGB1, GP9, TUSC7, DNAJB8-AS1, RABL3, SLC9C1, ILDR1, ACAD9, ASTE1, KLF15, GTPBP8, TAGLN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, TMPRSS7, CD200R1L, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, KPNA1, PRR23B, PRR23C, FOXL2NB, LSAMP, MIR198, MCM2, CD200, MYLK, NCK1, NDUFB4, ARGFX, PODXL2, PCCB, A4GNT, DBR1, CLDN18, TIMMDC1, PLA1A, AMOTL2, ACKR4, RAB6B, FBXO40, ATP6V1A, PIK3CB, PLXNA1, IL20RB, SEMA5B, WDR5B, PARP14, GRAMD1C, ROPN1, SIDT1, SLC41A3, ACPP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SLC35A5, MSL2, FAIM, PPP2R3A, TMEM39A, ABHD10, CDV3, IFT122, CFAP44, EAF2, MUC13, HMCES, MRPS22, POGLUT1, ISY1, HEG1, KIAA1257, ARHGAP31, CCDC191, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, POPDC2, ATG3, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLC15A2, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, MIR567, MIR568, TF, TRH, FAM86HP, PRR23A, UPK1B, UMPS, CNBP, ZNF80, ZNF148, RAB7A, ZXDC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZBED2, HSPBAP1, C3orf52, QTRT2, EFCC1, NEK11, UBA5, C3orf36, NAA50, CEP63, CEP70, ABTB1, SLC35G2, PARP9, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, PHLDB2, LOC90246, EFCAB12, BOC, COPB2, CD80, CD86, STXBP5L, IQCB1) 0.425209137252082 398 0.0958682258742488 1.11878233666106 21523 0.319981484225591 4 2 2 -6.83280064162183 LTS-002 NA NA NA NA LTS-002 chr3 139279295 140685827 1406533 * c(TRIM42, NMNAT3, SLC25A36, CLSTN2) 0.419869269181688 11 0.0285447017850949 1.3111767777352 341 0.374349279520415 6 3 3 -6.76244207790139 LTS-002 chr3 140685828 142984235 2298408 * c(LOC100289361, LOC100507389, GRK7, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, PAQR9, ATP1B3, PLS1, XRN1, ATR, SLC25A36, RASA2, TFDP2, TRPC1, SPSB4, PXYLP1, CHST2, RNF7) 0.445800991795181 31 0.115873160167969 1.0729300335233 2418 0.292407100953169 3 2 1 -6.82193496996507 LTS-002 chr3 142984236 150302010 7317775 * c(WWTR1-AS1, HLTF-AS1, SLC9A9-AS1, RNF13, TM4SF18, CP, CPA3, CPB1, AGTR1, C3orf58, WWTR1, SERP1, SLC9A9, GYG1, PLSCR5, ANKUB1, TM4SF1, COMMD2, PFN2, PLOD2, PLSCR1, PLSCR2, PLSCR4, LOC646903, HLTF, TM4SF4, ZIC1, EIF2A, ZIC4, HPS3, TSC22D2) 0.404183608871427 46 0.0590065582206205 1.17364351353268 2390 0.349774263033697 4 2 2 -6.77851615150223 LTS-002 chr3 150302011 150690439 388429 * c(CLRN1-AS1, ERICH6, SERP1, SELENOT, SIAH2, CLRN1, EIF2A) 0.365 1 NA 1.15981520728655 285 0.571374703730623 4 4 0 -5.76450953874586 LTS-002 chr3 150690440 151131087 440648 * c(MED12L, CLRN1-AS1, GPR171, P2RY13, GPR87, P2RY12, CLRN1, P2RY14) 0.383581768291325 8 0.0581449850435469 1.14091416136182 461 0.256416416015705 4 3 1 -6.73330350254416 LTS-002 chr3 151131088 151134178 3091 * MED12L NA 0 NA 1.728 1 NA NA NA NA NA LTS-002 chr3 151134179 168833766 17699588 * c(TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, PDCD10, MED12L, AADAC, OTOL1, PPM1L, WDR49, PQLC2L, C3orf79, SPTSSB, DHX36, AADACP1, MECOM, SLITRK3, PLCH1, TIPARP, ARHGEF26, GOLIM4, IGSF10, C3orf33, TRIM59, SCHIP1, LINC00880, AADACL2, GPR149, IL12A, KPNA4, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, MBNL1, MLF1, MME, NA NA NA NA NA NA NA NA NA LTS-002 P2RY1, NMD3, RSRC1, SERPINI1, SERPINI2, SUCNR1, LXN, CCNL1, IFT80, PTX3, BCHE, RAP2B, RARRES1, TMEM14EP, LINC01330, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, IQCJ, SSR3, SCARNA7, MIR551B, LINC00886, KCNAB1, VEPH1, ZBBX, ARL14, GFM1, B3GALNT1, GMPS, SLC33A1, EGFEM1P) 0.373931198601899 83 0.0989070466596307 1.29521372494168 5726 0.719097219450209 5 4 1 -6.76899604793507 LTS-002 NA NA NA NA LTS-002 chr3 168833767 187447067 18613301 * c(LOC100128164, LOC100131635, MIR1224, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, ADIPOQ-AS1, LINC01014, ALG3, KCNMB2, IGF2BP2, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, RTP1, CRYGS, TTC14, LRRC34, DGKG, HTR3C, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, EPHB3, ETV5, MECOM, NLGN1, TNIK, MCF2L2, ATP11B, VPS8, LOC253573, NAALADL2, GHSR, GPR160, FETUB, LAMP3, KCNMB3, NA NA NA NA NA NA NA NA NA LTS-002 HTR3E, C3orf70, HRG, CCDC39, EHHADH-AS1, LRRIQ4, SAMD7, NMRAL1P1, RTP2, SOX2-OT, KNG1, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, DNAJB11, PIK3CA, PLD1, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, MCCC1, PSMD2, MRPL47, NCEH1, SLC7A14, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, FNDC3B, ST6GAL1, SKIL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SLC2A2, SOX2, SST, SNORA81, SNORD66, MIR569, TERC, THPO, SEC62, TBL1XR1, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTRT3, ACTL6A, CHRD, TNFSF10, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.374837385196098 154 0.104945594451384 1.2145926106951 11554 0.336648366498861 5 4 1 -6.9363610437728 LTS-002 NA NA NA NA LTS-002 chr3 187447068 193386768 5939701 * c(MIR944, LOC100131635, SNAR-I, OPA1-AS1, TPRG1-AS2, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, TPRG1, LPP-AS2, OSTN, ATP13A5, IL1RAP, FLJ42393, LPP, OPA1, P3H2, HRASLS, BCL6, GMNC, ATP13A4, MGC2889, TP63, CLDN1) 0.394532142207927 86 0.100598774377687 1.2842414557248 2440 0.769999850774904 5 3 2 -6.75611181010147 LTS-002 chr3 193386769 193409838 23070 * OPA1 NA 0 NA 0.87 1 NA NA NA NA NA LTS-002 chr3 193409839 195306436 1896598 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, ATP13A3, TMEM44) 0.327252281055509 26 0.144141026028731 1.14218489599844 1205 0.363233047554298 4 4 0 -6.77877918425566 LTS-002 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.029 1 NA NA NA NA NA LTS-002 chr3 195345046 195453067 108022 * c(MUC20, MIR570, SDHAP2) 0.335896930942202 11 0.119697345607388 1.50672452768696 112 0.476916422500669 6 5 1 -6.74104514342599 LTS-002 chr3 195453068 195453157 90 * MUC20 NA 0 NA 2.191 1 NA NA NA NA NA LTS-002 chr3 195453158 195476016 22859 * c(MUC20, MUC4) 0.37477966842828 5 0.10708734752528 2.5821251381527 68 3.12268225982563 20 13 7 -6.7330995955729 LTS-002 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.297 1 NA NA NA NA NA LTS-002 chr3 195477782 197767894 2290113 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.366692403337823 85 0.11725195165995 1.14769080732948 3137 0.318860364928811 4 3 1 -6.74703042095385 LTS-002 chr3 197767895 197770512 2618 * LMLN NA 0 NA 1.21226339462977 51 0.255790396729087 5 NA NA -5.76445871319323 LTS-002 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.155 1 NA 0.849084059701994 13 0.203416649597159 2 2 0 -5.76479700021951 LTS-002 chr4 60336 2733624 2673289 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, TMEM129) 0.349852478773599 121 0.0857122307572111 0.762663799878835 4250 0.215896670679144 1 1 0 -6.97175291337905 LTS-002 chr4 2733625 13598922 10865298 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, HTT-AS, LINC01587, MFSD10, MRFAP1L1, CLNK, ADD1, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, BOD1L1, NSG1, GPR78, LOC285484, DOK7, LINC00955, LINC01097, LINC01096, GRK4, HTT, HGFAC, HMX1, NOP14-AS1, MSANTD1, NA NA NA NA NA NA NA NA NA LTS-002 FAM86EP, USP17L6P, USP17L9P, LRPAP1, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, NKX3-2, RGS12, AFAP1, S100P, DEFB131, SH3BP2, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, TNIP2, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, NOP14, FAM193A, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, KIAA0232, WDR1, HS3ST1) 0.358471484402692 213 0.0814743187785388 0.817312087008553 6507 0.249617145823582 1 1 0 -7.11723279386384 LTS-002 NA NA NA NA LTS-002 chr4 13598923 13600575 1653 * BOD1L1 NA 0 NA 1.242 1 NA NA NA NA NA LTS-002 chr4 13600576 13610266 9691 * BOD1L1 0.353 1 NA 1.05367572991948 141 0.236711576642794 3 3 0 -5.76449269959586 LTS-002 chr4 13610267 49063872 35453606 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR4802, MIR4801, MIR5091, MIR548AX, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, SLC34A2, CORIN, PTTG2, PPARGC1A, LIAS, C1QTNF7, ARAP2, CNGA1, OCIAD2, GNPDA2, CPEB2, PACRGL, NFXL1, NIPAL1, SHISA3, LINC01085, KLB, DHX15, ADGRA3, COX7B2, SLC10A4, SMIM14, TAPT1, TAPT1-AS1, LIMCH1, TBC1D1, SEL1L3, PDS5A, LCORL, GABRA2, GABRA4, GABRB1, GABRG1, BOD1L1, FBXL5, FAM184B, DCAF4L1, NA NA NA NA NA NA NA NA NA LTS-002 YIPF7, FRYL, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCNIP4-IT1, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, MIR218-1, CPEB2-AS1, PCDH7, LAP3, KLHL5, SEPSECS, KLF3, RBM47, DCAF16, OCIAD1, COMMD8, TMEM33, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, ATP10D, NWD2, CC2D2A, SLAIN2, STIM2, WDR19, GBA3, QDPR, RFC1, GUF1, RPL9, NCAPG, CLRN2, SOD3, BST1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MIR573, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, MED28, KCNIP4, TLR10, FGFBP2, PROM1, CCKAR, PHOX2B, LDB2, CCDC149, FAM114A1, SLIT2, CD38, FGFBP1) 0.35907269906187 239 0.0855348761714495 0.801426905459012 12341 0.352080957173892 1 1 0 -7.00106442684937 LTS-002 NA NA NA NA LTS-002 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.659344657136818 5 0.00927361849549565 0 NA NA -5.7644110737799 LTS-002 chr4 52709193 52714511 5319 * DCUN1D4 0.395 1 NA 0.743382459033009 17 0.255649921480413 1 1 0 -5.76452717150463 LTS-002 chr4 52714512 56737455 4022944 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, NMU, SPATA18, PDCL2, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, DANCR, LOC644145, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1, CLOCK) 0.337549456885694 35 0.114063575078392 0.847339983821129 2012 0.279920633422328 2 2 0 -6.87878708754898 LTS-002 chr4 56737456 56737949 494 * EXOC1 NA 0 NA 0.579 1 NA NA NA NA NA LTS-002 chr4 56737950 57887175 1149226 * c(THEGL, PAICS, ARL9, AASDH, POLR2B, PPAT, EXOC1, KIAA1211, REST, SPINK2, SRP72, NOA1, HOPX, CEP135) 0.388554064751493 30 0.0424611248842607 0.744094453508289 1215 0.187309236293036 1 1 0 -6.84404404367908 LTS-002 chr4 57887176 57888303 1128 * POLR2B NA 0 NA 1.014 1 NA NA NA NA NA LTS-002 chr4 57888304 66535417 8647114 * c(EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134, POLR2B) 0.348304238786014 16 0.0593814996442495 0.91721419029854 619 0.25961434790403 2 2 0 -6.78092730399647 LTS-002 chr4 66535418 66535528 111 * EPHA5 NA 0 NA 0.85 1 NA NA NA NA NA LTS-002 chr4 66535529 68906584 2371056 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.313186944234062 12 0.102611653895411 0.802059809805177 732 0.258252391738204 2 2 0 -7.14456694265454 LTS-002 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.272957139425046 43 0.238812547830108 0 NA NA -5.77153305447613 LTS-002 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.923 1 NA NA NA NA NA LTS-002 chr4 68907461 80828555 11921095 * c(FAM47E, FTLP10, CSN1S2BP, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, PCAT4, ANTXR2, TMPRSS11B, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, GK2, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HTN1, HTN3, NA NA NA NA NA NA NA NA NA LTS-002 CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, UBA6-AS1, LOC550113, SDAD1, BMP2K, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, FRAS1, NAA11, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SCARB2, ADAMTS3, G3BP2) 0.34705062194057 165 0.090255825534243 0.818838332944345 7838 0.247548493159489 1 1 0 -7.20764425911494 LTS-002 NA NA NA NA LTS-002 chr4 80828556 80828613 58 * ANTXR2 NA 0 NA 0.715 1 NA NA NA NA NA LTS-002 chr4 80828614 85525571 4696958 * c(THAP9-AS1, CDS1, HPSE, HELQ, ANTXR2, LIN54, RASGEF1B, FGF5, SEC31A, C4orf22, COQ2, HNRNPD, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, GPAT3, HNRNPDL) 0.346974531538513 25 0.0499 0.750194974422699 2132 0.193149661848736 1 1 0 -7.51909885892526 LTS-002 chr4 85525572 85530548 4977 * CDS1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-002 chr4 85530549 119424106 33893558 * c(SNHG8, MIR1243, MIR1973, MIR3684, LOC100506746, LOC100507053, GIMD1, SEC24B-AS1, MIR4451, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, STPG2-AS1, FAM13A, CDS1, SEC24B, PDLIM5, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, C4orf36, TRAM1L1, SLC9B2, SLC9B1, PPM1K, TIGD2, SGMS2, DMP1, DSPP, EGF, EIF4E, ENPEP, MMRN1, WDFY3, METAP1, NPNT, LOC256880, NAP1L5, PPA2, NA NA NA NA NA NA NA NA NA LTS-002 DAPP1, DKK2, HPGDS, RPL34-AS1, FAM13A-AS1, GPRIN3, STPG2, ANK2, GRID2, H2AFZ, HADH, IBSP, CFI, LRIT3, SLC10A6, HSD17B13, PCNAP1, CCSER1, WDFY3-AS2, MANBA, AFF1, MIR302B, MTTP, ATOH1, NFKB1, CISD2, HSD17B11, LEF1, HERC5, LARP7, PDHA2, EMCN, PITX2, PKD2, NUDT9, GAR1, TET2, ARHGEF38, HERC6, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, MAPK10, BDH2, SMARCAD1, MEPE, INTS12, KLHL8, PTPN13, OSTC, RAP1GDS1, RPL34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, NDST4, ETNPPL, BMPR1B, SNCA, SPP1, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, ARHGAP24, CASP6, SPARCL1, C4orf17, COL25A1, PRSS12, UNC5C, LAMTOR3, HERC3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, ABCG2) 0.341078854230009 298 0.0841110820509891 0.823536358166074 13570 0.401675275162874 1 1 0 -7.37901326249361 LTS-002 NA NA NA NA LTS-002 chr4 119424107 119428031 3925 * character(0) NA 0 NA 0.577 1 NA NA NA NA NA LTS-002 chr4 119428032 119475703 47672 * CEP170P1 0.358 1 NA 0.51260821567584 116 0.271614176488572 0 0 0 -5.78873238205067 LTS-002 chr4 119475704 119475719 16 * character(0) NA 0 NA 0.711 1 NA NA NA NA NA LTS-002 chr4 119475720 124323307 4847588 * c(PP12613, SPRY1, PRDM5, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, SYNPO2, FABP2, FGF2, ANXA5, IL2, LINC01061, C4orf3, MAD2L1, MYOZ2, EXOSC9, USP53, BBS7, METTL14, IL21, LOC645513, TRPC3, CETN4P, NDNF, TNIP3, QRFPR, KIAA1109, PDE5A, CCNA2, SEC24D) 0.331675329901523 90 0.0852456134164191 0.798001101082183 2944 0.230304003768609 1 1 0 -7.14954581962066 LTS-002 chr4 124323308 128621209 4297902 * c(MIR2054, SPRY1, INTU, LINC01091, ANKRD50, FAT4) 0.360505485864525 6 0.0351055551159642 0.929329681724999 580 0.179745272442084 2 2 0 -6.80081622614496 LTS-002 chr4 128621210 155155704 26534495 * c(SCOC-AS1, MIR3140, LINC01095, MIR4799, LINC00499, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, LSM6, SCLT1, C4orf33, PABPC4L, ZNF827, SH3D19, MGAT4D, DCLK2, FREM3, MMAA, EDNRA, ELF2, TIGD4, TMEM154, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, RNF175, GYPA, GYPB, GYPE, ANXA2P1, PRSS48, IL15, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, GATB, PCDH18, DKFZP434I0714, NA NA NA NA NA NA NA NA NA LTS-002 POU4F2, OTUD4, DCHS2, LARP1B, FBXW7, MAML3, TMEM184C, RNF150, PCDH10, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, HHIP-AS1, C4orf51, TLR2, FAM160A1, UCP1, ARHGAP10, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, USP38, SMARCA5, MGARP, FHDC1, INPP4B, SNORD73A, PRMT9, LRBA) 0.337766563924501 90 0.0834788579542349 0.808743197912419 8670 0.248138829079488 1 1 0 -7.38211026273212 LTS-002 NA NA NA NA LTS-002 chr4 155155705 165118945 9963241 * c(MIR3688-1, MIR3688-2, CTSO, C4orf45, RBM46, C4orf46, ETFDH, FGA, FGB, FGG, ANP32C, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY1R, NPY2R, NPY5R, FAM198B, ASIC5, PLRG1, DCHS2, PPID, MARCH1, TMEM144, TMA16, PDGFC, FSTL5, FNIP2, RXFP1, TDO2, MAP9, TKTL2, LRAT, NAF1, RAPGEF2) 0.355148434817395 62 0.0989662872799617 0.849644856574643 3485 0.31867572175184 2 2 0 -6.94250669515763 LTS-002 chr4 165836346 165879975 43630 * c(FAM218A, TRIM61) 0.350583070218569 4 0.0366969571853944 0.551275035193417 62 0.372282842837796 2 2 0 -6.82783444798064 LTS-002 chr4 165879976 165961138 81163 * c(FAM218A, TRIM60, TRIM61) 0.34589528488718 9 0.0604193677557123 1.68362285563435 39 1.23968720315788 11 8 3 -6.73399605928995 LTS-002 chr4 165961139 165961237 99 * TRIM60 NA 0 NA 0.88 1 NA NA NA NA NA LTS-002 chr4 165961238 183836203 17874966 * c(MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, DCTD, TRIM60, AGA, TMEM192, PALLD, FBXO8, GK3P, GPM6A, LINC01098, HMGB2, HPGD, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, HPF1, NEIL3, DDX60, TENM3, SH3RF1, SPCS3, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, CEP44, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.361305290315926 121 0.0739255162709255 0.833920941064299 4386 0.359069847087336 2 2 0 -7.21252760489414 LTS-002 chr4 183836204 183836511 308 * DCTD NA 0 NA 0.654 1 NA NA NA NA NA LTS-002 chr4 183836512 186539870 2703359 * c(CLDN24, MIR3945, LINC01093, ENPP6, WWC2-AS2, DCTD, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.351308583849971 29 0.0825591890974802 0.769596864784245 2126 0.234402061027487 1 1 0 -6.9631649829229 LTS-002 chr4 186539871 186541153 1283 * SORBS2 NA 0 NA 0.969 1 NA NA NA NA NA LTS-002 chr4 186541154 190945944 4404791 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.341996365420902 37 0.111601507142137 0.888846797167652 1277 0.26359425686706 2 2 0 -6.75949382230551 LTS-002 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.952929944192986 26 0.627251338411056 2 NA NA -5.76457055415252 LTS-002 chr5 140347 163205 22859 * PLEKHG4B 0.406 1 NA 0.890693636075187 67 0.23143140702071 2 2 0 -5.76445473813439 LTS-002 chr5 163206 9154846 8991641 * c(PDCD6, MIR4277, MIR4278, MIR4458HG, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4636, MIR4456, MIR4635, LOC100996325, SLC12A7, ADCY2, PAPD7, TPPP, EXOC3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, PLEKHG4B, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, PP7080, LINC01019, SLC6A19, LINC01020, SLC6A18, LRRC14B, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, NSUN2, CEP72, AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, SRD5A1, NA NA NA NA NA NA NA NA NA LTS-002 TERT, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, MED10, NKD2, SEMA5A, TRIP13) 0.43164530793851 147 0.077068444577315 1.04969313492243 4155 0.29464360993891 3 2 1 -6.81378249264976 LTS-002 NA NA NA NA LTS-002 chr5 9154847 9190319 35473 * SEMA5A NA 0 NA 0.538 1 NA NA NA NA NA LTS-002 chr5 9190320 35965970 26775651 * c(SNORD123, LOC100130744, CDH6, MIR4279, SNHG18, ROPN1L-AS1, MIR4637, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, SUB1, C1QTNF3, UGT3A1, CAPSL, FAM173B, CMBL, DNAJC21, CTNND2, TTC23L, DAP, DNAH5, CCT5, PDZD2, FBXL7, AMACR, RAI14, LOC285692, LOC285696, DROSHA, LOC340107, LOC340113, IL7R, LOC401177, LINC01194, MARCH11, MYO10, NPR3, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, BRIX1, C5orf22, NA NA NA NA NA NA NA NA NA LTS-002 ANKH, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, AGXT2, ANKRD33B, TARS, TRIO, GUSBP1, LSP1P3, SPEF2, ADAMTS12, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.425240672630746 129 0.094626567399182 0.934938140681973 6880 0.361480078293865 2 1 1 -6.88756977373149 LTS-002 NA NA NA NA LTS-002 chr5 35965971 36049576 83606 * c(UGT3A1, UGT3A2) 0 1 NA 0.904520692573482 59 0.405992050778275 2 2 0 -5.76441161632582 LTS-002 chr5 36049577 36184258 134682 * c(UGT3A2, SKP2, MIR580, LMBRD2) 0.274602508930946 9 0.221222801215828 0.895802855437701 311 0.257908150925611 3 3 0 -6.78083800044908 LTS-002 chr5 36184259 36194007 9749 * NADK2 0.46 1 NA 0.767942804488383 25 0.177044561245655 1 1 0 -5.76446067452919 LTS-002 chr5 36194008 45259553 9065546 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MRPS30, MROH2B, EGFLAM, NADK2, LOC153684, DAB2, NIM1K, RANBP3L, FGF10, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, HCN1, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, NIPBL-AS1, LOC648987, SLC1A3, C5orf42, C6, C7, NA NA NA NA NA NA NA NA NA LTS-002 C9, ZNF131, CARD6, OSMR, NUP155) 0.431600408430758 74 0.0660810103278797 0.892166030120226 5001 0.261356296556655 2 1 1 -6.77533979884501 LTS-002 NA NA NA NA LTS-002 chr5 45259554 45696278 436725 * HCN1 NA 0 NA 1.06480239402987 111 0.320899415788242 3 NA NA -5.76822133797409 LTS-002 chr5 49692017 49692043 27 * EMB 0.429 1 NA 1.374 1 NA NA NA NA NA LTS-002 chr5 49692044 69373289 19681246 * c(LRRC70, FAM159B, NA, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, NA NA NA NA NA NA NA NA NA LTS-002 MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, GUSBP3, SMN1, SMN2, TAF9, MIR449B, MIR581, GTF2H2C, PARP8, ANKRD55, ELOVL7, TRAPPC13, SERF1A, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.406643212615397 161 0.104906623668103 0.880502311552532 8312 0.286970221506389 2 1 1 -6.82445540272654 LTS-002 NA NA NA NA LTS-002 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.32 1 NA NA NA NA NA LTS-002 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) 0.434188428316156 3 0.0215715862498179 0.570763803919257 62 0.291390560959674 0 0 0 -7.19237336528317 LTS-002 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.772 1 NA NA NA NA NA LTS-002 chr5 70357051 93855377 23498327 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-002 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.411668318072674 204 0.0965510596457105 0.901760421333217 10285 0.493373236207125 2 1 1 -6.73449288769106 LTS-002 NA NA NA NA LTS-002 chr5 93855378 96367747 2512370 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.410335926793584 58 0.086466733879311 0.844399103840001 2213 0.221099007045241 2 1 1 -6.86959371804872 LTS-002 chr5 96367748 96372232 4485 * character(0) 0.398710567245577 5 0.0385512645706986 1.24244249210992 95 0.36759540602515 6 4 2 -6.73411567708896 LTS-002 chr5 96372233 126738408 30366176 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, NA NA NA NA NA NA NA NA NA LTS-002 PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.422640403026319 198 0.0777057419430729 0.907267340992733 8516 0.287578758923011 2 1 1 -6.74297591115618 LTS-002 NA NA NA NA LTS-002 chr5 126738409 129522205 2783797 * c(KIAA1024L, MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.408819636671572 16 0.0603812539894074 0.994804207040936 1404 0.282820941847697 3 2 1 -6.7514786545187 LTS-002 chr5 129522206 134670427 5148222 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, C5orf66-AS2, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, NA NA NA NA NA NA NA NA NA LTS-002 P4HA2, LYRM7, CDKN2AIPNL, H2AFY, FNIP1, DDX46) 0.39668154052158 52 0.107490353490508 0.854706335686128 4681 0.232072971495847 2 1 1 -6.91843087454827 LTS-002 NA NA NA NA LTS-002 chr5 134670428 137087498 2417071 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.421004304465637 30 0.051956270295206 0.968923588854816 1169 0.409903473207933 2 1 1 -6.7809857001235 LTS-002 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.821 1 NA NA NA NA NA LTS-002 chr5 137087505 159996646 22909142 * c(GNPDA1, SRA1, C5orf52, MIR3142, MIR3141, LINC01024, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, KIF20A, G3BP1, APBB3, TNIP1, CDX1, SLU7, FAXDC2, FAM114A2, BRD8, TCERG1, HNRNPA0, SPINK5, SOX30, SYNPO, SLC35A4, PWWP2A, C1QTNF2, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, UBLCP1, CSF1R, CSNK1A1, ADRA1B, CTNNA1, SLC36A2, SPINK13, JAKMIP2-AS1, ZMAT2, PPP1R2P3, FAM71B, PRELID2, NA NA NA NA NA NA NA NA NA LTS-002 SH3RF2, PLAC8L1, RNF145, ADRB2, DIAPH1, DPYSL3, SLC26A2, HBEGF, EBF1, EGR1, SPATA24, DNAJC18, STK32A, SLC36A1, ETF1, FABP6, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, ATP10B, LARP1, HARS2, GEMIN5, PCDHGA12, LRRTM2, CCDC69, PCDHB5, GFRA3, HAVCR1, SNORD63, SNORA74A, CYFIP2, PKD2L2, IL17B, GLRA1, GM2A, RELL2, LOC285626, LOC285627, SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, PCDHB1, HARS, ANXA6, HSPA9, NDST1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 HTR4, TMEM173, ARSI, IRGM, NIPAL4, IK, IL12B, ITK, DND1, SAP30L-AS1, PROB1, C5orf46, ARHGEF37, SPINK6, ANKHD1-EIF4EBP3, MIR143, MIR146A, SPINK14, FNDC9, MFAP3, NDUFA2, ATOX1, NPY6R, IGIP, PCDH1, PCDHGC3, DCTN4, MZB1, PAIP2, PCDH12, FAM13B, FAM53C, REEP2, PDE6A, LARS, CXXC5, PDGFRB, KDM3B, PFDN1, RBM27, POU4F3, PCDHB18P, PCDHB17P, WDR55, ANKHD1, THG1L, PPP2R2B, TMCO6, GALNT10, RBM22, PCDHGC5, PCDHGC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, NMUR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KCTD16, PCDHB16, HMHB1, PURA, RPS14, ZBED8, ECSCR, GRXCR2, SPINK9, SIL1, ARAP3, SGCD, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, SNHG4, TTC1, CARMN, LOC729080, UBE2D2, WNT8A, PCYOX1L, CCNJL, SH3TC2, SAP30L, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC4A9, NME5, SLC25A2, PCDHB19P, PSD2, CYSTM1, SPINK7, HAVCR2, SMIM3, EIF4EBP3, PCDHGB4, CDC23, ADAM19, HDAC3, FCHSD1, TIMD4, ZNF300, MYOZ3, PTTG1, CD14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CNOT8, HAND1, MED7, MYOT, NRG2, RNF14, CLINT1, PCDHGA8, CD74, PCDHA9, MATR3, KIAA0141, JAKMIP2, CDC25C, SLC23A1) 0.400253179068464 330 0.114032024155182 0.897664741113462 20796 0.629801108031009 2 1 1 -6.74599968937042 LTS-002 NA NA NA NA LTS-002 chr5 159996647 160016584 19938 * ATP10B NA 0 NA 1.447 1 NA NA NA NA NA LTS-002 chr5 160016585 170726445 10709861 * c(FAM196B, MIR103B1, MIR378E, C5orf58, NUDCD2, DOCK2, FOXI1, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, LOC285629, KCNIP1, HMMR, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, RANBP17, SLIT3, MIR585, PANK3, CCNG1) 0.415756232878407 71 0.0972056315696427 0.953969717449236 3047 0.295173744389399 2 1 1 -6.95153268270806 LTS-002 chr5 170726446 180374817 9648372 * c(LOC100268168, MIR1229, MIR4281, MIR3912, LOC100507387, MIR4634, HEIH, RGS14, CPLX2, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, C5orf47, OR2Y1, NKX2-5, CREBRF, DBN1, DRD1, DUSP1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, FBXW11, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, EFCAB9, SH3PXD2B, LOC285593, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, TLX3, ZNF354C, HK3, NA NA NA NA NA NA NA NA NA LTS-002 HNRNPAB, HNRNPH1, HRH2, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, FLJ16171, MIR340, MSX2, NPM1, RPL26L1, C5orf45, DDX41, NOP16, HMP19, UIMC1, RAB24, NEURL1B, FAM193B, TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, ERGIC1, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, RANBP17, FAM153C, SLC34A1, BNIP1, SNCB, SNORA74B, STK10, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZFP2, RUFY1, CPEB4, PRR7, CANX, MXD3, THOC3, PHYKPL, STC2, FGF18, SQSTM1, ATP6V0E1, UNC5A, BOD1, COL23A1, UBTD2, SCGB3A1, PDLIM7, SFXN1, ADAMTS2, MAML1, GFPT2) 0.407056474930877 183 0.0908969724075898 0.888673385924683 9502 0.284071394057592 2 1 1 -6.7564368471673 LTS-002 NA NA NA NA LTS-002 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.713 1 NA NA NA NA NA LTS-002 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) 0.433416576971521 2 0.00353553390593274 1.67929100383383 65 0.440713103848576 15 8 7 -11.9041874614907 LTS-002 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.967 1 NA NA NA NA NA LTS-002 chr5 180430826 180671029 240204 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM41) 0.4102506333524 33 0.0961456636378554 0.910179331552802 521 0.354063663434493 2 1 1 -6.73553976178312 LTS-002 chr5 180671030 180688111 17082 * TRIM52 NA 0 NA 0.972294156294821 53 0.237630564523876 3 NA NA -5.76490412108732 LTS-002 chr6 203389 311938 108550 * DUSP22 0.41 1 NA 0.65618309641088 27 0.266853129253889 0 0 0 -5.76442512220447 LTS-002 chr6 311939 367484 55546 * DUSP22 0.426869829131665 4 0.0519422756528822 0.493740651223555 89 0.192585802614688 0 0 0 -6.83025382920242 LTS-002 chr6 367485 391716 24232 * character(0) NA 0 NA 1.422 1 NA NA NA NA NA LTS-002 chr6 391717 26600330 26208614 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, HIST1H2AA, KDM1B, RBM24, RNF182, NA NA NA NA NA NA NA NA NA LTS-002 PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, MYLK4, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, ALDH5A1, TXNDC5, C6orf62, TMEM14B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, RIOK1, DTNBP1, CMAHP, ADTRP, RIPK1, PRPF4B, HIST1H3F, GCM2, CD83, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, KIAA0319, NUP153) 0.420658381970672 288 0.0851387522269313 0.884859583711855 12427 0.326915280219652 2 1 1 -6.79151634656036 LTS-002 NA NA NA NA LTS-002 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 1.162 1 NA NA NA NA NA LTS-002 chr6 26636496 26638217 1722 * ZNF322 0.218 1 NA 1.88203110304472 39 1.59861454734566 10 10 0 -5.76441013725883 LTS-002 chr6 26638218 26638248 31 * ZNF322 NA 0 NA 1.053 1 NA NA NA NA NA LTS-002 chr6 26638249 29641329 3003081 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-002 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.428606432009124 87 0.0721965503829368 0.928488925150498 2746 0.283157416669909 2 1 1 -6.76824160218255 LTS-002 NA NA NA NA LTS-002 chr6 29641330 29691019 49690 * character(0) 0.434 1 NA 0.780676966432419 33 0.251525813483397 1 1 0 -5.76441013471346 LTS-002 chr6 29691020 29858355 167336 * character(0) 0.388917907639989 20 0.106923718505051 0.821115170913515 175 1.1481248110751 4 3 1 -6.7424656304631 LTS-002 chr6 29858356 29910080 51725 * character(0) NA 0 NA 0.787 1 NA NA NA NA NA LTS-002 chr6 29910081 29911228 1148 * character(0) 0.441557494726748 23 0.0517357224771932 0.401724471201645 39 0.338114468874194 0 0 0 -6.87097732229097 LTS-002 chr6 29911229 29911241 13 * character(0) NA 0 NA 0.871 1 NA NA NA NA NA LTS-002 chr6 29911242 29912108 867 * character(0) 0.449 1 NA 1.22117137208845 2 0.146371103705615 5 5 0 -5.76444454992602 LTS-002 chr6 29912109 31237858 1325750 * character(0) 0.408146436956365 150 0.0835415338303072 0.912761755758905 3191 0.961311382112522 2 1 1 -6.73894479838643 LTS-002 chr6 31237859 31237876 18 * character(0) 0.317 1 NA 0.834 1 NA NA NA NA NA LTS-002 chr6 31237877 31238554 678 * character(0) 0.277423516780812 10 0.0988064887657801 3.44629689311956 29 39.5023981160306 8 7 1 -6.73310745087882 LTS-002 chr6 31238555 31238884 330 * character(0) NA 0 NA 0.649 1 NA NA NA NA NA LTS-002 chr6 31238885 31322187 83303 * character(0) 0.405315929560368 16 0.0410674242354367 0.403940686092382 39 0.274332727439016 0 0 0 -6.93287299946538 LTS-002 chr6 31322188 31322211 24 * character(0) NA 0 NA 0.853 1 NA NA NA NA NA LTS-002 chr6 31322212 31466547 144336 * character(0) 0.30534014005699 16 0.11376289304221 0.788899714260791 113 0.309448889993697 3 3 0 -6.80514237812137 LTS-002 chr6 31466548 31473546 6999 * character(0) 0.44 1 NA 0.95668585622323 4 0.128817700647077 2 2 0 -5.76526934037651 LTS-002 chr6 31473547 32427927 954381 * character(0) 0.396626798885517 146 0.0738176934470856 0.901067133457118 4529 0.258245762569646 2 1 1 -6.77566067209387 LTS-002 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 2.758 1 NA NA NA NA NA LTS-002 chr6 32485401 32489650 4250 * HLA-DRB5 0.322 1 NA 2.46917001987662 23 1.25210593037074 15 15 0 -5.76441021384968 LTS-002 chr6 32489651 32489655 5 * HLA-DRB5 0.239 1 NA 0.837 1 NA NA NA NA NA LTS-002 chr6 32489656 32497964 8309 * HLA-DRB5 0.0478154086657828 6 0.0501893082903786 3.83908603895386 26 4.76226369912461 20 20 0 -7.46206861701976 LTS-002 chr6 32497965 32498118 154 * HLA-DRB5 0.232415033646619 4 0.0412179168161938 1.07373450648347 7 0.769226636985238 19 16 3 -6.7340029163459 LTS-002 chr6 32498119 32546515 48397 * HLA-DRB5 0.357 1 NA 1.45678142784064 2 1.42694148443445 7 7 0 -5.76442968640954 LTS-002 chr6 32546516 32632777 86262 * c(HLA-DQA1, HLA-DRB5) 0.350186519745542 68 0.100233400798563 1.43096859860836 224 2.12333113707989 8 6 2 -6.73342112750042 LTS-002 chr6 32632778 32709309 76532 * character(0) 0.468 1 NA 1.51693935394832 17 1.21488005943942 7 7 0 -5.76441050241628 LTS-002 chr6 32709310 32725764 16455 * character(0) 0.464896386211935 15 0.0250119971213816 1.07717206609629 60 0.341100069399924 4 2 2 -8.41712799344291 LTS-002 chr6 32725765 32726623 859 * character(0) NA 0 NA 0.763 1 NA NA NA NA NA LTS-002 chr6 32726624 33035512 308889 * character(0) 0.44191872294408 31 0.0467079464124095 0.831895300177851 719 0.486043708430005 2 1 1 -6.91261187317316 LTS-002 chr6 33035513 33053734 18222 * character(0) 0.42080240296733 60 0.106345215229741 1.19479938010456 155 2.4885750511198 4 2 2 -6.73407576482419 LTS-002 chr6 33053735 33054721 987 * character(0) 0.366819797820269 31 0.106095037533559 2.18395226538591 58 15.4819578178823 18 12 6 -6.73303294042517 LTS-002 chr6 33054722 33054774 53 * character(0) NA 0 NA 1.041 1 NA NA NA NA NA LTS-002 chr6 33054775 45390631 12335857 * c(LOC100131047, LINC01512, TOMM6, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4647, MIR4641, MIR4642, MIR4462, MIR5690, CDKN1A, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, NUDT3, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, IP6K3, CLPS, TAF8, MAPK14, CCDC167, PTCRA, DNAH8, TCTE1, SLC29A1, FANCE, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, NA NA NA NA NA NA NA NA NA LTS-002 LEMD2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, CUL9, ANKS1A, UBR2, DAAM2, GLTSCR1L, MTCH1, ZNF318, SPDEF, YIPF3, USP49, MDGA1, BRPF3, GNMT, GLO1, GLP1R, LOC285847, PNPLA1, TREML4, RPL7L1, GRM4, GUCA1A, GUCA1B, PRICKLE4, PACSIN1, HMGA1, HSP90AB1, CLPSL1, TREML1, TREML3P, SLC35B2, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, LINC00951, CRIP3, MDFI, MEA1, MLN, MOCS1, C6orf226, TMEM151B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ATP6V0CP3, GGNBP1, RPL10A, NFKBIE, NFYA, DEF6, MRPL2, ETV7, PPIL1, PEX6, PGC, PIM1, TREM2, TREM1, POLH, PPARD, GTPBP2, UHRF1BP1, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, MAPK13, LRFN2, AARS2, XPO5, PTK7, CPNE5, BAK1, PRPH2, ZFAND3, RPS10, SRSF3, C6orf132, C6orf106, MRPL14, DLK2, SNRPC, SRF, SRPK1, TAF11, TBCC, MIR586, TCP11, TEAD3, BYSL, TULP1, TDRG1, VEGFA, ZNF76, TFEB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TREML2, KCNK16, UQCC2, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.414271018309157 319 0.0847161193803696 0.903556911889583 15568 0.302102533912767 2 1 1 -6.73350284561171 LTS-002 NA NA NA NA LTS-002 chr6 45390632 45399619 8988 * RUNX2 NA 0 NA 1.276 1 NA NA NA NA NA LTS-002 chr6 45399620 51934413 6534794 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, PKHD1, CLIC5, CENPQ, ENPP5, RHAG, TFAP2B, CRISP2, PLA2G7, TFAP2D, RUNX2, SLC25A27) 0.413085965324704 85 0.0870770900285669 0.97520933319439 3010 0.287598498514951 3 2 1 -6.84598634762223 LTS-002 chr6 51934414 51935178 765 * PKHD1 NA 0 NA 0.637 1 NA NA NA NA NA LTS-002 chr6 51935179 53516408 1581230 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.416491536216682 40 0.10229991102084 0.865500117014444 1375 0.265272914517093 2 1 1 -6.75659728073154 LTS-002 chr6 53516409 56965696 3449288 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, KIAA1586, BMP5, DST, COL21A1, MLIP) 0.434741415656781 35 0.0464022963789907 0.96325524607392 2029 0.224760561790012 2 1 1 -6.99453616962706 LTS-002 chr6 56965697 56999612 33916 * ZNF451 0 1 NA 0.960530347352185 193 0.244266752845672 2 2 0 -5.76573298843153 LTS-002 chr6 56999613 58445594 1445982 * c(ZNF451, GUSBP4, RAB23, PRIM2, BAG2) 0.361135465327147 55 0.0865556904084737 1.01474540841025 365 0.407822754252439 2 2 0 -6.80383233504109 LTS-002 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.858 1 NA NA NA NA NA LTS-002 chr6 62390154 62407067 16914 * KHDRBS2 0.397 1 NA 1.14595329347365 23 0.197426736298642 4 4 0 -5.76441014765088 LTS-002 chr6 62407068 73952250 11545183 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.414649094196609 69 0.0917719081211925 0.933753041859218 2722 0.30088928992626 2 1 1 -6.82047838104749 LTS-002 chr6 73952251 74432870 480620 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.417290515825047 13 0.0494399402538848 0.798183371261515 619 0.23720232910226 1 1 0 -6.78720259701415 LTS-002 chr6 74432871 74432923 53 * CD109 0.432 1 NA 1.411 1 NA NA NA NA NA LTS-002 chr6 74432924 86253456 11820533 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, SNX14, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.397711396071017 48 0.130250141231325 0.935602518011168 4181 0.269432060150083 2 1 1 -6.86927968020921 LTS-002 chr6 86253457 86256814 3358 * SNX14 NA 0 NA 0.849 1 NA NA NA NA NA LTS-002 chr6 86256815 91296606 5039792 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.351535154004687 12 0.192664156689113 0.863806761752265 3376 0.524615348744115 2 2 0 -6.75557240997366 LTS-002 chr6 91296607 91296668 62 * MAP3K7 NA 0 NA 0.924 1 NA NA NA NA NA LTS-002 chr6 91296669 105177197 13880529 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.403417267094545 58 0.122431120677485 0.953999848486837 2444 0.265803359580966 2 1 1 -7.08207515479039 LTS-002 chr6 105177198 109762710 4585513 * c(LIN28B-AS1, LOC100422737, LOC100996634, BVES, SEC63, BVES-AS1, AIM1, CCDC162P, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5) 0.423952164218835 25 0.0423616178476067 0.826404035998505 2869 0.211820593316867 1 1 0 -7.07238413231888 LTS-002 chr6 109762711 167590641 57827931 * c(UST-AS1, TRAPPC3L, LOC100129518, LOC100130476, C6orf99, LINC00271, LOC100132735, AIRN, LOC100287632, LOC100289495, NHEG1, MIR1913, MIR3145, MIR3918, MIR3939, MIR3668, MIR3662, MIR3692, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, CAHM, MIR4466, MIR4465, RAET1E-AS1, MIR5695, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, TRDN, CITED2, TRAF3IP2, HBS1L, PDE10A, SMPDL3A, RAB32, KATNA1, FGFR1OP, GTF3C6, MTFR2, SFT2D1, NA NA NA NA NA NA NA NA NA LTS-002 TMEM200A, NUS1, GINM1, IL22RA2, SLC18B1, SLC16A10, TAGAP, CCR6, COL10A1, ADAT2, CLVS2, TAAR1, STXBP5, NCOA7, HINT3, PACRG, RAET1E, CTGF, LOC153910, ZC2HC1B, CNKSR3, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, PNLDC1, RNF217, NKAIN2, OLIG3, TXLNB, C6orf118, OSTCP1, EPB41L2, EYA4, ESR1, FABP7, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, SCAF8, CDK19, TAB2, TSPYL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SASH1, SYNE1, HEY2, HEBP2, BRD7P3, FRK, VGLL2, FUCA2, FYN, TMEM244, FAM26E, MCM9, SHPRH, ASF1A, CCDC28A, MTHFD1L, MOXD1, IPCEF1, AMD1, TIAM2, FBXO5, RGS17, GJA1, PDE7B, GPR6, GPR31, LINC00326, PHACTR2-AS1, LINC01268, FLJ34503, DCBLD1, LOC285762, PACRG-AS1, PRR18, MRPL18, GRM1, DSE, HDAC2, HIVEP2, TAAR6, HSF2, SLC35D3, ZC3H12D, RSPH4A, IFNGR1, ECT2L, IGF2R, NUP43, C6orf58, RAET1G, ARG1, KPNA5, HMGA1P7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SUMO4, CENPW, SOGA3, CEP85L, THEMIS, SAMD5, IYD, ACAT2, LAMA2, LAMA4, DKFZp451B082, TCP10L2, LPA, GTF2H5, MARCKS, MAN1A1, MAS1, MAP3K4, MAP3K5, FAM26F, FLJ46906, LINC00602, GSTM2P1, RFPL4B, MYB, NMBR, CLDN20, OPRM1, NOX3, PARK2, HDDC2, PCMT1, TFB1M, TUBE1, CDC40, RWDD1, AIG1, SNX9, VTA1, MPC1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, PLG, PLN, IL20RA, MTRF1L, AHI1, RMND1, VNN3, PKIB, ECHDC1, AGPAT4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TULP4, HYMAI, GOPC, ADGRG6, ARFGEF3, NHSL1, PLEKHG1, ARID1B, SERINC1, TMEM181, ZBTB2, PTPRK, ABRACL, PBOV1, SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS6KA2, RPS12, PERP, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, MICAL1, SLC22A1, SLC22A3, SLC22A2, SMPD2, SOD2, SNORA20, SNORA29, T, MIR548B, TCF21, TCP1, DYNLT1, TNFAIP3, TPD52L1, TSPYL1, TPI1P3, METTL24, KATNBL1P6, STXBP5-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TMEM242, LOC729603, UTRN, EZR, VIP, ULBP3, OR2A4, RNF217-AS1, EPM2A, ARMT1, FAM184A, ZDHHC14, ADGB, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, PPP1R14C, RNF146, SF3B5, TAAR8, RSPH3, FBXO30, RPF2, STX7, L3MBTL3, FNDC1, RSPO3, LRP11, LTV1, SERAC1, REPS1, PEX3, DDO, PPIL4, SLC22A16, RNASET2, STX11, WISP3, SYNJ2, VNN2, VNN1, WASF1, TAAR5, MAP7, LINC00473, LATS1, MFSD4B, TAAR2, TAAR3, ARHGAP18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SYTL3, MED23, QKI, AKAP7, TBPL1, WTAP, AKAP12, KIAA0408, PHACTR2, BCLAF1, ZBTB24, FIG4) 0.408339634134605 630 0.0944724455899648 0.891956595390096 28155 0.36513146177163 2 1 1 -6.773265996052 LTS-002 NA NA NA NA LTS-002 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.396 1 NA NA NA NA NA LTS-002 chr6 167591885 167595662 3778 * TCP10L2 0.401560075366171 4 0.0444550334607905 0.638110936285945 84 0.367785738241927 1 1 0 -6.73412037749361 LTS-002 chr6 167595663 168709541 1113879 * c(HGC6.3, DACT2, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, AFDN-AS1, TCP10, FRMD1, TTLL2) 0.35240243668103 32 0.100690073629029 0.995583785828943 946 0.458385485363511 2 2 0 -6.76801875921047 LTS-002 chr6 168709542 170890384 2180843 * c(MIR4644, LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.41182688834664 29 0.0881344276653651 0.87112235101079 1109 0.309094476110459 2 1 1 -6.75175229285689 LTS-002 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.851298707200204 45 0.239224563787233 2 NA NA -5.76452519680825 LTS-002 chr7 193047 299850 106804 * FAM20C 0.284 1 NA 0.880437878091214 99 0.216353498521304 2 2 0 -5.76525060950833 LTS-002 chr7 299851 5926027 5626177 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-002 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.295514807880268 171 0.0825511835264449 0.891072485348962 5315 0.280697711364918 2 2 0 -7.09707789191831 LTS-002 NA NA NA NA LTS-002 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.524 1 NA NA NA NA NA LTS-002 chr7 5937950 6017391 79442 * c(RSPH10B, CCZ1, PMS2) NA 0 NA 0.470581368476241 135 0.269925783055656 0 NA NA -5.83759453492486 LTS-002 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.768 1 NA NA NA NA NA LTS-002 chr7 6018171 6825641 807471 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.316986338309266 27 0.0746088565887555 0.851997138493695 1312 0.256159749431838 2 2 0 -6.96054757682426 LTS-002 chr7 6825642 6825645 4 * RSPH10B2 NA 0 NA 1.092 1 NA NA NA NA NA LTS-002 chr7 6825646 6863802 38157 * c(CCZ1B, RSPH10B2) 0.446 1 NA 1.39307493672722 68 0.421210072474108 6 6 0 -5.76441080995602 LTS-002 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.852 1 NA NA NA NA NA LTS-002 chr7 6864270 20824510 13960241 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, TWIST1, UMAD1, ISPD, SCIN, PHF14, HDAC9) 0.319954761313767 90 0.048653320215993 0.930529439974807 4025 0.24013876843896 2 2 0 -7.26746158472272 LTS-002 chr7 20824511 30639677 9815167 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, EVX1, SP8, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, RPL23P8, ZNRF2, STEAP1B, RPS2P32, OSBPL3, GARS, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, NA NA NA NA NA NA NA NA NA LTS-002 HOXA10, HOXA11, HOXA13, FAM221A, IL6, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, CDCA7L, KLHL7, STK31, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, GGCT, FAM126A, PLEKHA8, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.332613174141191 162 0.0575801675236201 0.874594889020179 5614 0.366609101651467 2 2 0 -6.91979862211876 LTS-002 NA NA NA NA LTS-002 chr7 30639678 30640667 990 * GARS NA 0 NA 1.142 1 NA NA NA NA NA LTS-002 chr7 30640668 34979849 4339182 * c(DPY19L1P1, LOC100130673, MIR550B2, INMT-FAM188B, PPP1R17, INMT, FKBP9, ADCYAP1R1, CRHR2, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, GARS, GHRHR, BBS9, AQP1, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, NEUROD6, MIR550A2, FAM188B) 0.324176730574775 47 0.0515022070963972 0.988044741254047 2330 0.571252939804217 3 3 0 -6.74600914370694 LTS-002 chr7 34979850 34981374 1525 * DPY19L1 NA 0 NA 0.804 1 NA NA NA NA NA LTS-002 chr7 34981375 38309169 3327795 * c(MIR1200, AOAH-IT1, DPY19L1, KIAA0895, AOAH, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, TBX20, HERPUD2, SFRP4, EEPD1, STARD3NL, ELMO1, SEPT7) 0.321087699907095 37 0.0819283727304422 0.848070634355661 1410 0.251445881856614 2 2 0 -6.99299539583173 LTS-002 chr7 38309170 38313075 3906 * TARP NA 0 NA 1.391 1 NA NA NA NA NA LTS-002 chr7 38313076 38402610 89535 * c(TRG-AS1, TARP) 0.344058097858614 3 0.09462029380635 1.24849186776599 76 0.543991789637475 5 4 1 -6.73842579725699 LTS-002 chr7 38402611 38402770 160 * TRG-AS1 NA 0 NA 0.722 1 NA NA NA NA NA LTS-002 chr7 38402771 57509993 19107223 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NA NA NA NA NA NA NA NA NA LTS-002 NPC1L1, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.303722219318778 205 0.0815780148152405 0.913406690947462 8864 0.414531618112323 2 2 0 -7.02601169044385 LTS-002 NA NA NA NA LTS-002 chr7 57509994 57533225 23232 * ZNF716 NA 0 NA 0.880406477622783 75 0.36008558792408 2 NA NA -5.76447633051687 LTS-002 chr7 62758725 63023528 264804 * ZNF733P 0.356 1 NA 1.14276056174648 7 0.427168752201215 4 4 0 -5.76441804138846 LTS-002 chr7 63023529 64643425 1619897 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.361609920709122 28 0.0378692228904693 0.878169635022989 619 0.316738106454807 2 2 0 -6.74036484184452 LTS-002 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.54 1 NA NA NA NA NA LTS-002 chr7 64643764 65150775 507012 * c(ZNF92, LOC441242, INTS4P2) 0.381 1 NA 0.559998906982841 88 0.219653013150282 0 0 0 -5.92655223476981 LTS-002 chr7 65150776 65154685 3910 * c(LOC441242, INTS4P2) NA 0 NA 0.761 1 NA NA NA NA NA LTS-002 chr7 65154686 77695037 12540352 * c(POM121C, PMS2P9, LOC100133091, MIR4284, MIR3914-1, MIR3914-2, APTR, MIR4651, MIR4650-1, MIR4650-2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, NA NA NA NA NA NA NA NA NA LTS-002 TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.351901232970826 126 0.108144012449009 0.992022647835024 5896 0.407761023471027 3 3 0 -6.82851914683476 LTS-002 NA NA NA NA LTS-002 chr7 77695038 77708193 13156 * MAGI2 NA 0 NA 1.402 1 NA NA NA NA NA LTS-002 chr7 77708194 86506499 8798306 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.344360648127663 36 0.0954718939776652 1.13755853247941 2044 0.300739664868525 4 3 1 -6.84116483846259 LTS-002 chr7 86506500 91502731 4996232 * c(LOC101409256, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, STEAP2, STEAP1, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12, DMTF1) 0.363257664682341 29 0.114033365180478 1.05185558394911 2666 0.313728145670043 3 3 0 -6.83640414000973 LTS-002 chr7 91502732 91502797 66 * MTERF1 NA 0 NA 0.969 1 NA NA NA NA NA LTS-002 chr7 91502798 94027223 2524426 * c(MIR4652, AKAP9, CDK6, BET1, COL1A2, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.361286029024667 20 0.108959903296193 0.957495012753818 2278 0.237792832878343 2 2 0 -6.82522873572811 LTS-002 chr7 94027224 98562367 4535144 * c(MIR3609, LOC100506136, SLC25A13, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, DLX6-AS1, MGC72080, C7orf76, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, CASD1, TAC1, MIR591, SHFM1, TRRAP, SGCE) 0.374442507816479 61 0.0885835378013257 1.0373711756421 2770 0.29504061941181 3 2 1 -6.83696838684932 LTS-002 chr7 98562368 98563376 1009 * TRRAP NA 0 NA 0.509 1 NA NA NA NA NA LTS-002 chr7 98563377 100321192 1757816 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, NA NA NA NA NA NA NA NA NA LTS-002 SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.388536918901896 59 0.0579020465101562 0.964279947340223 4383 0.241600268432598 3 2 1 -6.88512631982818 LTS-002 NA NA NA NA LTS-002 chr7 100321193 100350411 29219 * c(EPO, ZAN) 0.47 1 NA 0.707596481536477 84 0.262728379193237 0 0 0 -5.76570409429042 LTS-002 chr7 100350412 100350689 278 * ZAN NA 0 NA 0.964 1 NA NA NA NA NA LTS-002 chr7 100350690 100464888 114199 * c(EPHB4, SLC12A9, ZAN) 0.384623857515789 22 0.0358352410646908 1.10081042830755 414 2.56820062582016 4 3 1 -6.73304678283738 LTS-002 chr7 100464889 100549499 84611 * c(UFSP1, ACHE, SRRT, TRIP6) NA 0 NA 1.02250751139826 240 0.283773001359463 3 NA NA -5.76441221851755 LTS-002 chr7 100549500 100549505 6 * character(0) NA 0 NA 2.278 1 NA NA NA NA NA LTS-002 chr7 100549506 100549573 68 * character(0) 0.306 1 NA 2.21587234820115 3 0.0979302472851639 13 13 0 -5.76441074531258 LTS-002 chr7 100549574 100550504 931 * character(0) 0.332464805982796 41 0.124738775828216 2.45485510530874 63 0.870915721266063 18 13 5 -6.73380840952664 LTS-002 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.295 1 NA NA NA NA NA LTS-002 chr7 100550727 100551096 370 * character(0) 0.260258244664106 8 0.0992139643109059 0.536031607978054 40 0.383400051328862 5 5 0 -6.73415198297411 LTS-002 chr7 100551097 100552867 1771 * character(0) 0.339405327749963 63 0.0905380514528598 2.31531326514867 99 0.977066960863549 20 14 6 -6.73325514065552 LTS-002 chr7 100552868 100552894 27 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-002 chr7 100552895 100553077 183 * character(0) 0.398141531776184 5 0.0176351920885484 1.71520425136664 9 0.669192050161984 18 11 7 -6.7334990937098 LTS-002 chr7 100553078 100607851 54774 * character(0) 0.449 1 NA 0.978284252682593 21 0.234378214898586 3 3 0 -5.76567747610226 LTS-002 chr7 100607852 100687115 79264 * c(MUC12, MUC17) 0.370742154751489 33 0.0790991538283668 1.20537888756121 384 0.325036009252367 4 3 1 -6.75255576647751 LTS-002 chr7 100687116 100691170 4055 * MUC17 NA 0 NA 0.687 1 NA NA NA NA NA LTS-002 chr7 100691171 107260526 6569356 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, ZNHIT1, SH2B2, DUS4L, AP1S1, COL26A1, MUC17, CUX1, CCDC71L, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, CLDN15, POLR2J2, HBP1, DNAJC2, GPR22, MOGAT3, DPY19L2P2, NAT16, SLC26A5, LHFPL3, ORC5, SERPINE1, FIS1, PIK3CG, POLR2J, PUS7, ALKBH4, POLR2J3, PRKAR2B, NA NA NA NA NA NA NA NA NA LTS-002 KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, IFT22, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.368331773119474 69 0.0768634266719959 0.974912781991937 5004 0.286758222263802 2 2 0 -7.01081716113987 LTS-002 NA NA NA NA LTS-002 chr7 107260527 141766589 34506063 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, MIR3666, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, AASS, FAM3C, CFTR, ZNF277, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, ASZ1, ASB15, BMT2, CLEC2L, FMC1, FEZF1-AS1, IQUB, C7orf77, C7orf66, TMEM213, MGC27345, RNF133, THAP5, ZNF800, DLD, SLC26A3, TFEC, LAMB4, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, NA NA NA NA NA NA NA NA NA LTS-002 HYAL4, TSPAN12, CLEC5A, MKRN1, UBN2, POT1, HYALP1, TES, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, WEE2-AS1, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, IFRD1, LOC349160, IMPDH1, IRF5, KCND2, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LAMB1, LEP, LINC00998, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, AKR1B15, EIF3IP1, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRCAM, NRF1, WEE2, ATP6V0A4, PNPLA8, PAX4, TAS2R3, TAS2R4, TAS2R16, CPA4, WNT16, ZC3HC1, LUC7L2, MRPS33, LSM8, SLC26A4, PODXL, GPR85, TAS2R5, ING3, LRRN3, CHCHD3, PPP1R3A, RBM28, TMEM140, AGK, METTL2B, BCAP29, ANKRD7, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, STRIP2, PTN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KIAA1549, PTPRZ1, EXOC4, OPN1SW, LRRC4, TMEM168, NA, C7orf73, CCDC136, PARP12, CREB3L2, SLC13A1, SMO, SPAM1, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, MIR592, MIR593, TMEM229A, UBE2H, WNT2, LUZP6, C7orf49, GCC1, ST7, CBLL1, CPED1, TTC26, CALD1, KDM7A, CALU, CAPZA2, IMMP2L, CTTNBP2, SLC37A3, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, MGAM, WASL, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, ST7-AS1, ST7-AS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ST7-OT3, CADPS2, CPA5, FOXP2, CEP41, DOCK4) 0.367913319162761 298 0.107705721320925 1.02054959325397 18163 0.328641319924966 3 2 1 -6.82900523469292 LTS-002 NA NA NA NA LTS-002 chr7 141766590 141794346 27757 * MGAM NA 0 NA 0.699572863689352 88 0.146710989431817 0 NA NA -5.76719255939936 LTS-002 chr7 141794347 143305763 1511417 * c(MOXD2P, MTRNR2L6, CLCN1, OR9A2, C7orf34, TMEM139, PRSS58, PRSS3P2, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, PRSS1, NA, ZYX, CASP2, MGAM, OR6W1P, MGAM2, FAM131B) 0.334947834530492 104 0.103098849005063 1.1061525188384 2224 1.00167356364985 3 3 0 -6.74965587838904 LTS-002 chr7 143305764 143306195 432 * character(0) NA 0 NA 2.112 1 NA NA NA NA NA LTS-002 chr7 143306196 143400402 94207 * c(LOC154761, TCAF2) NA 0 NA 2.45177968455156 49 2.85319892049818 15 NA NA -5.76441150462982 LTS-002 chr7 143400403 143425207 24805 * c(LOC154761, TCAF2) NA 0 NA 1.509 1 NA NA NA NA NA LTS-002 chr7 143425208 143840031 414824 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.38152968033511 6 0.0689656919538017 1.17545904960553 275 0.382989394791675 4 3 1 -6.73530353080046 LTS-002 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.418 1 NA NA NA NA NA LTS-002 chr7 143883365 144074299 190935 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.385 1 NA 0.634559024820273 153 0.252919638385895 0 0 0 -5.76693526124534 LTS-002 chr7 144074300 158930775 14856476 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, NA NA NA NA NA NA NA NA NA LTS-002 CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, VIPR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.359020131885749 325 0.0773567397528178 1.00063926913674 9675 0.357598524444573 3 3 0 -6.91417680046855 LTS-002 NA NA NA NA LTS-002 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 0.902251960516163 21 0.434411380627911 2 NA NA -5.7644101627778 LTS-002 chr8 182757 182934 178 * ZNF596 0.437 1 NA 0.690117627491888 4 0.299598620379556 0 0 0 -5.76441267911321 LTS-002 chr8 182935 21996161 21813227 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDRP, ERICH1, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, ZNF596, DEFT1P, PRSS55, C8orf74, DMTN, CLN8, FDFT1, NA NA NA NA NA NA NA NA NA LTS-002 FGL1, XPO7, PSD3, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FBXO25, FGF20, GFRA2, ANGPT2, FAM86B3P, XKR6, LOC286083, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, AGPAT5, CSGALNACT1, HR, MTUS1, KIAA1456, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 DEFB135, DEFB136, DEFB134, ERICH1-AS1, SH2D4A, BLK, CSMD1, USP17L4, USP17L3, FAM160B2, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, MIR596, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MYOM2, DLGAP2, MFHAS1, RP1L1, ARHGEF10, KBTBD11) 0.37835436816778 317 0.0690108221299948 1.04749139040017 9182 0.358548284989076 3 2 1 -6.91247414985184 LTS-002 NA NA NA NA LTS-002 chr8 21996162 39142479 17146318 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, NKX2-6, UNC5D, LETM2, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, LGI3, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, RHOBTB2, DDHD2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADGRA2, NA NA NA NA NA NA NA NA NA LTS-002 LSM1, ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, C8orf86, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, PLEKHA2, LINC00589, MBOAT4, PDLIM2, SFTPC, EBF2, BMP1, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, ASH2L, CHMP7, BAG4, ENTPD4, PHYHIP) 0.387010605058525 246 0.0782737696153014 0.99540505707321 12117 0.648547606481181 3 2 1 -6.80762775348909 LTS-002 NA NA NA NA LTS-002 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.604 1 NA NA NA NA NA LTS-002 chr8 39311551 39349408 37858 * ADAM3A 0.460753254125826 3 0.0658508415537215 1.93171848599757 54 0.655619061611457 10 5 5 -6.99397746121537 LTS-002 chr8 39349409 39349414 6 * ADAM3A NA 0 NA 1.323 1 NA NA NA NA NA LTS-002 chr8 39349415 41401818 2052404 * c(LOC100130964, ADAM3A, IDO2, ADAM2, IDO1, GOLGA7, C8orf4, SFRP1, ZMAT4, GINS4, ADAM18) 0.360502513510989 22 0.0914557589447261 1.05727677314058 712 0.300479542825622 3 3 0 -6.85770384635774 LTS-002 chr8 41401819 41402501 683 * GINS4 0 1 NA 1.25474728962653 15 0.684985658522098 5 5 0 -5.76441023165587 LTS-002 chr8 41402502 41550195 147694 * c(GPAT4, NKX6-3, ANK1, MIR486-1, GINS4) 0.191419220171411 10 0.202675685106362 1.01195497931301 398 0.329629281865875 5 5 0 -6.84207866293489 LTS-002 chr8 41550196 41553928 3733 * c(NKX6-3, ANK1) 0.422 1 NA 1.09759323620075 27 0.313418046377154 4 4 0 -5.76445295296449 LTS-002 chr8 41553929 43047593 1493665 * c(MIR4469, AP3M2, CHRNB3, SMIM19, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, PLAT, POLB, THAP1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.357260267325116 21 0.121131294371812 1.01150744257916 1665 0.325853521784322 3 3 0 -6.7882884911011 LTS-002 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 1.1231802963645 143 0.294082983094115 4 NA NA -5.764880085429 LTS-002 chr8 47752736 48719844 967109 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0.407 1 NA 0.976747043502417 391 0.263163114664018 3 3 0 -5.78333730542258 LTS-002 chr8 48719845 65291759 16571915 * c(MIR124-2HG, LOC100130298, SBF1P1, LINC00968, LINC01606, MIR4470, YTHDF3-AS1, LYPLA1, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CLVS1, CYP7A1, SDR16C5, YTHDF3, LINC00588, SNORD54, NPBWR1, LOC286177, NKAIN3, LINC01289, MRPL15, FAM150A, LYN, MIR124-2, MCM4, MOS, ASPH, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, CHD7, PRKDC, RAB2A, RP1, RPS20, SDCBP, SOX17, UG0898H09, SNAI2, TCEA1, TTPA, UBE2V2, CA8, NA NA NA NA NA NA NA NA NA LTS-002 CHCHD7, EFCAB1, NSMAF, RGS20, GGH, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.379594661301394 105 0.113114979267993 1.01087648027375 5228 0.317761106205628 3 2 1 -6.79537477474377 LTS-002 NA NA NA NA LTS-002 chr8 65291760 65291763 4 * c(MIR124-2HG, MIR124-2) NA 0 NA 0.821 1 NA NA NA NA NA LTS-002 chr8 65291764 67970498 2678735 * c(TCF24, MIR124-2HG, LINC00967, RRS1-AS1, C8orf44-SGK3, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, C8orf46, PTTG3P, BHLHE22, LINC01299, PPP1R42, LOC401463, MIR124-2, MYBL1, PDE7A, ARMC1, LINC00251, C8orf44, SNHG6, SNORD87, VCPIP1, TRIM55, DNAJC5B, CYP7B1, MTFR1) 0.429961071062101 23 0.049579536451873 0.852907894926828 1604 0.258747396032294 2 1 1 -6.85359070322844 LTS-002 chr8 67970499 67971378 880 * COPS5 NA 0 NA 1.113 1 NA NA NA NA NA LTS-002 chr8 67971379 100904183 32932805 * c(MIR875, C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC01592, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, NCOA2, ARFGEF1, POP1, COPS5, WWP1, STMN2, SLC26A7, OSR2, C8orf34, COX6C, FAM92A1, NDUFAF6, DCAF4L2, RALYL, RDH10, C8orf37, VPS13B, SLC7A13, SBSPON, DECR1, NA NA NA NA NA NA NA NA NA LTS-002 CNBD1, TMEM64, E2F5, ERICH5, EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, SNORA72, STAU2, TRIQK, DPY19L4, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 UBE2W, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, CPA6, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CSPP1, PREX2, SLCO5A1, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TP53INP1, PTDSS1) 0.416688967102464 268 0.09749370413588 0.921045894982748 12918 0.334026584231527 2 1 1 -6.80522215304709 LTS-002 NA NA NA NA LTS-002 chr8 100904184 104053252 3149069 * c(MIR4471, MIR5680, COX6C, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.406392716622112 30 0.0892770194781196 0.840882128935281 1762 0.22057792535916 2 1 1 -6.92884341900052 LTS-002 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.318 1 NA NA NA NA NA LTS-002 chr8 104054528 110465060 6410533 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, PKHD1L1, EMC2, RIMS2) 0.381360092370022 44 0.096009433446835 1.04257506371865 2282 2.12847804242169 4 3 1 -6.74133199957653 LTS-002 chr8 110465061 110476993 11933 * PKHD1L1 0.345 1 NA 1.06165363492669 41 0.270334648077562 3 3 0 -5.76453534623314 LTS-002 chr8 110476994 131792798 21315805 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR2053, MIR1208, MIR3610, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, LINC00536, TRIB1, COLEC10, RNF139, ZHX1, ADCY8, MAL2, CSMD3, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, SLC30A8, EXT1, ZHX2, KCNV1, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, MYC, NDUFB9, NOV, TNFRSF11B, ASAP1, FAM49B, NA NA NA NA NA NA NA NA NA LTS-002 ENPP2, POU5F1B, TRMT12, WDYHV1, SAMD12-AS1, SYBU, GSDMC, PVT1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, TRPS1, CASC8, LINC00977, COL14A1, DSCC1, DERL1, TATDN1, UTP23, C8orf76, FAM83A, EIF3H, MED30, EBAG9, PKHD1L1, TBC1D31, MTSS1, KIAA0196) 0.324743068620765 103 0.108367603125638 1.06426977593116 6241 0.628937487431545 3 3 0 -6.78067411802218 LTS-002 NA NA NA NA LTS-002 chr8 131792799 140945846 9153048 * c(HHLA1, NDRG1, KHDRBS3, ADCY8, TMEM71, COL22A1, EFR3A, LRRC6, LINC01591, KCNQ3, MIR30B, MIR30D, FAM135B, PHF20L1, KCNK9, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, OC90, TRAPPC9, WISP1, HPYR1) 0.354096066754963 97 0.103389618580593 1.11759182318306 2842 0.338521685020955 4 3 1 -6.81532314375592 LTS-002 chr8 140945847 140945896 50 * TRAPPC9 0.399 1 NA 0.705 1 NA NA NA NA NA LTS-002 chr8 140945897 141774576 828680 * c(AGO2, CHRAC1, PTK2, TRAPPC9) 0.352405155868521 8 0.0500628176822451 0.962420873273009 496 0.244840461476951 2 2 0 -6.78528949860284 LTS-002 chr8 141774577 141780818 6242 * PTK2 0.401 1 NA 0.765982340223406 9 0.081955441823252 1 1 0 -5.76461168022444 LTS-002 chr8 141780819 142266910 486092 * c(DENND3, SLC45A4, PTK2) 0.405075316130424 20 0.0458593674067509 0.951136363608258 523 0.225813126511127 3 2 1 -6.7734057084233 LTS-002 chr8 142266911 142366577 99667 * LINC01300 NA 0 NA 1.253 1 NA NA NA NA NA LTS-002 chr8 142366578 144103845 1737268 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, MROH5, LY6E, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, PSCA, LY6D, JRK) 0.379340562397328 53 0.0477796025611333 1.10881904695558 1287 0.381563557267765 4 3 1 -6.74818267405709 LTS-002 chr8 144103846 144105056 1211 * character(0) NA 0 NA 0.807 1 NA NA NA NA NA LTS-002 chr8 144105057 145151144 1046088 * c(MIR937, FAM83H-AS1, CCDC166, MIR4664, RHPN1, TOP1MT, CYC1, EEF1D, MAPK15, PUF60, ZC3H3, SCRIB, OPLAH, GLI4, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GRINA, GPIHBP1, NRBP2, SPATC1, MAFA, LY6H, PLEC, EXOSC4, MROH6, PYCRL, MIR661, TSTA3, RHPN1-AS1, GSDMD, ZNF696, EPPK1, PARP10, TIGD5, GPAA1, NAPRT, ZNF623) 0.38570053217505 78 0.080651675786637 0.995248205005052 3004 0.262720108301868 3 2 1 -6.79776831306053 LTS-002 chr8 145151145 145154797 3653 * c(CYC1, SHARPIN) 0 1 NA 1.05385001818419 49 0.188805345086767 3 3 0 -5.76445962191438 LTS-002 chr8 145154798 145515034 360237 * c(BOP1, WDR97, HGH1, SCX, MROH1, SHARPIN, MAF1) 0.429 1 NA 1.00324150450284 337 0.249246257024104 3 3 0 -5.7659207671945 LTS-002 chr8 145515035 146280802 765768 * c(MIR939, MIR1234, MFSD3, ADCK5, BOP1, FBXL6, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, CPSF1, HSF1, ZNF517, TMEM249, C8orf82, LRRC24, TONSL, CYHR1, VPS28, SLC39A4, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, SLC52A2, ARHGAP39, ZNF34, SCRT1, PPP1R16A, DGAT1, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.323138077853144 62 0.078447955376815 0.8968961905407 2578 0.223881484985712 2 2 0 -6.87098604911425 LTS-002 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.644094869270554 3 0.0831384387633061 0 NA NA -5.7644146737937 LTS-002 chr9 14732 14754 23 * WASH1 0 1 NA 1.449 1 NA NA NA NA NA LTS-002 chr9 14755 8340508 8325754 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.446659766066431 99 0.0797706217372793 0.786386731119496 4023 0.225530922115318 1 1 0 -6.91494974286282 LTS-002 chr9 8340509 8341054 546 * PTPRD NA 0 NA 0.92 1 NA NA NA NA NA LTS-002 chr9 8341055 14868941 6527887 * c(LINC00583, FREM1, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, CER1) 0.449496113087598 34 0.039483891884667 0.883186464380568 1213 0.279544101913907 2 1 1 -7.15162775613895 LTS-002 chr9 14868942 14869080 139 * FREM1 NA 0 NA 0.45 1 NA NA NA NA NA LTS-002 chr9 14869081 32786653 17917573 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, TUSC1, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, LINC01242, NA NA NA NA NA NA NA NA NA LTS-002 TMEM215, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, ACO1, CDKN2A-AS1, EQTN, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, PLAA) 0.437627470593285 107 0.0959908190813602 0.810360338998658 5257 0.210159634321265 1 1 0 -7.13230019425055 LTS-002 NA NA NA NA LTS-002 chr9 32786654 32787349 696 * TMEM215 0 1 NA 0.842360447000115 15 0.543531135481764 2 2 0 -5.76441685307861 LTS-002 chr9 32787350 33624429 837080 * c(B4GALT1, SPINK4, ANXA2P2, DNAJA1, AQP3, AQP7, TMEM215, SUGT1P1, ANKRD18B, NFX1, CHMP5, APTX, SMU1, BAG1, NOL6) 0.284807296209042 9 0.191706227801232 0.763482397189492 999 0.215931225063176 1 1 0 -6.9571876049783 LTS-002 chr9 33624430 33624525 96 * ANXA2P2 0.448 1 NA 0.899780166282326 3 0.30423072384842 2 2 0 -5.76441014037363 LTS-002 chr9 33624526 40499498 6874973 * c(SNORD121A, GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, SNORD121B, SIGMAR1, CREB3, UNC13B, CCL27, PTENP1, DCTN3, CLTA, CNTFR, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, FBXO10, DNAI1, SIT1, ANXA2P2, STOML2, NUDT2, KIF24, IGFBPL1, IL11RA, ENHO, FAM205BP, FAM221B, NA NA NA NA NA NA NA NA NA LTS-002 OR13J1, TOMM5, FAM74A1, ZNF658B, CNTFR-AS1, NPR2, PAX5, EXOSC3, UBAP1, TMEM8B, UBE2R2, UBAP2, PRSS3, OR2S2, KIAA1161, GBA2, RMRP, CCL19, CCL21, NA, POLR1E, SHB, HRCT1, NA, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.426636691952708 166 0.0592246248480303 0.802048478502433 6743 0.220631357669354 1 1 0 -6.89043499621329 LTS-002 NA NA NA NA LTS-002 chr9 40499499 40784136 284638 * c(ZNF658, ZNF658B, NA, SPATA31A3, FAM74A3) NA 0 NA 0.70413225639366 21 0.153198719377962 0 NA NA -5.79639718717359 LTS-002 chr9 43815928 44175697 359770 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.255476385972661 53 0.283343120010835 0 NA NA -7.53504693465439 LTS-002 chr9 65602571 71534644 5932074 * c(FRG1HP, FAM27B, LOC100133920, FAM122A, TMEM252, LOC286297, FOXD4L3, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.346579384369164 34 0.109973064276259 0.851261544837175 319 0.27377661198187 2 2 0 -6.90168075532943 LTS-002 chr9 71534645 71555492 20848 * PIP5K1B 0.465 1 NA 0.816101070160406 12 0.307050435103046 1 1 0 -5.76467125644198 LTS-002 chr9 71555493 106901988 35346496 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, GADD45G, SPIN1, SEC61B, SLC35D2, CKS2, GRIN3A, TMC1, COL15A1, CARNMT1, C9orf57, C9orf85, NA NA NA NA NA NA NA NA NA LTS-002 C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, ALDOB, HABP4, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, INVS, GNAQ, C9orf47, SPATA31E1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LOC286238, LOC286359, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PHF2, SHC3, NANS, MRPL50, NUTM2F, DIRAS2, ASPN, TEX10, PLPPR1, AUH, NMRK1, STX17, NOL8, C9orf40, RFK, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, KLF9, TGFBR1, TLE1, TLE4, TMOD1, CORO2A, XPA, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RMI1, TRPM3, NR4A3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.436841548048031 317 0.0868318736883194 0.79205060657377 17997 0.275598272230793 1 1 0 -6.88203273369589 LTS-002 NA NA NA NA LTS-002 chr9 106901989 107457435 555447 * c(SMC2, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.437615166377063 24 0.0670554469898941 1.03092440384604 236 0.435680855079576 4 2 2 -6.8123365338492 LTS-002 chr9 107457436 107457441 6 * OR13D1 NA 0 NA 0.877 1 NA NA NA NA NA LTS-002 chr9 107457442 114090395 6632954 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, ABCA1, LPAR1, FKTN, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13D1, NA, C9orf152, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, FAM206A, TMEM38B, NIPSNAP3B, PTPN3, ZNF462, RAD23B, TAL2, TXN, SVEP1, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.450782863770282 64 0.103761894518018 0.823498186550475 3862 0.850400153774536 2 1 1 -6.84417707364926 LTS-002 chr9 114090396 115380966 1290571 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.450596526827239 29 0.0381962459146242 0.735903285214638 1301 0.192435739766742 0 0 0 -7.41975002685966 LTS-002 chr9 115380967 117074810 1693844 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.44340112757429 68 0.0847665116736376 0.811246030703663 2487 0.221487228673653 1 1 0 -6.89851780223794 LTS-002 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.295 1 NA NA NA NA NA LTS-002 chr9 117085363 117089820 4458 * ORM1 NA 0 NA 0.226414518685545 39 0.0744908040769986 0 NA NA -6.26927306277656 LTS-002 chr9 117089821 117089842 22 * ORM1 NA 0 NA 0.575 1 NA NA NA NA NA LTS-002 chr9 117089843 123166505 6076663 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.441672900951761 37 0.0829847755493318 0.851755173512109 1696 0.260337681734546 2 1 1 -6.96343539559229 LTS-002 chr9 123166506 123169321 2816 * CDK5RAP2 NA 0 NA 0.78 1 NA NA NA NA NA LTS-002 chr9 123169322 124065423 896102 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, GSN, RAB14, CDK5RAP2, PSMD5, TRAF1, C5) 0.454725326979629 33 0.0470002417788752 0.753406906221256 1418 0.181299080081758 0 0 0 -7.38460702753413 LTS-002 chr9 124065424 124072880 7457 * GSN NA 0 NA 0.879 1 NA NA NA NA NA LTS-002 chr9 124072881 125391875 1318995 * c(MIR4478, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, STOM, MORN5, OR1J4, LHX6, OR1J2, GGTA1P, GSN, OR1J1, OR1B1, NDUFA8, PTGS1, MRRF, RBM18) 0.451659670971589 19 0.11029320306925 0.843774059935755 1137 0.24317603651719 2 1 1 -6.85387693998712 LTS-002 chr9 125391876 125637062 245187 * c(OR1L4, OR1L3, OR1L1, OR1L6, OR5C1, OR1K1, PDCL, RC3H2) 0 1 NA 0.868021675019946 419 0.210862369313547 2 2 0 -5.76943371592406 LTS-002 chr9 125637063 125639930 2868 * RC3H2 0 2 0 0.908230007833962 19 0.392820197548877 0 0 0 -Inf LTS-002 chr9 125639931 125642023 2093 * RC3H2 NA 0 NA 0.705 1 NA NA NA NA NA LTS-002 chr9 125642024 126345623 703600 * c(ZBTB6, RABGAP1, GPR21, CRB2, RC3H2, STRBP, ZBTB26, DENND1A, SNORD90, MIR601, MIR600HG) 0.385443048747987 9 0.154273386485738 0.789389818222129 923 0.244348371370369 1 1 0 -6.74141549359589 LTS-002 chr9 126345624 127083725 738102 * c(NEK6, DENND1A, LHX2) 0.477 1 NA 0.70277268374397 155 0.147116591218713 0 0 0 -5.84846787908893 LTS-002 chr9 127083726 141070283 13986558 * c(LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, NA NA NA NA NA NA NA NA NA LTS-002 CELP, POMT1, NEK6, SDCCAG3, NOXA1, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, ABCA2, ENDOG, ENG, AK1, NAIF1, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NCS1, ANGPTL2, NUP188, FPGS, ABL1, NR5A1, FUT7, PHYHD1, CIZ1, NELFB, NSMF, GPSM1, DKFZP434A062, GAPVD1, GBGT1, NR6A1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 QRFP, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, ODF2, PAEP, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, TOR4A, EXD3, PTPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PPP6C, RABL6, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, CACNA1B, C9orf16, MAPKAP1, EHMT1, PTGES2, BRD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NUP214, LHX3, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, RALGPS1, ADAMTSL2, PPP1R26, SEC16A) 0.440772846715612 399 0.0660485308931483 0.781166653320417 22076 0.441557416723553 1 1 0 -6.92585937315757 LTS-002 NA NA NA NA LTS-002 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.537286861597364 5 0.134049244682691 0 NA NA -5.76645817449921 LTS-002 chr10 94832 282897 188066 * c(ZMYND11, TUBB8) 0.492 1 NA 1.14414048541194 37 0.252797958472389 4 4 0 -5.76441589763819 LTS-002 chr10 282898 17953152 17670255 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, IL2RA, IL15RA, NA NA NA NA NA NA NA NA NA LTS-002 ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.428125788390527 181 0.0978035056697939 1.08946682271021 8803 0.340162583971518 4 2 2 -6.96904484864091 LTS-002 NA NA NA NA LTS-002 chr10 17953153 18060259 107107 * c(MRC1, NA, TMEM236) NA 0 NA 0.065 1 NA NA NA NA NA LTS-002 chr10 18060260 18152622 92363 * c(MRC1, NA, TMEM236) NA 0 NA 0.175759594538981 93 0.225602943624508 0 NA NA -7.2369509922885 LTS-002 chr10 18152623 18155476 2854 * MRC1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-002 chr10 18155477 38645403 20489927 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, LOC100129055, SLC39A12-AS1, LOC100130992, MTRNR2L7, MIR1915, ZNF33BP1, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ENKUR, ARMC3, ZNF25, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, ITGB1, NA NA NA NA NA NA NA NA NA LTS-002 PTCHD3, KIF5B, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, ZNF248, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CACNB2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, PLXDC2, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12, SPAG6) 0.412148479907352 214 0.106779970968301 1.12065796476613 8326 0.415284921615135 4 2 2 -6.76997999217918 LTS-002 NA NA NA NA LTS-002 chr10 38645404 38740384 94981 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.22664173356862 55 0.294257917286047 5 NA NA -5.76513551512468 LTS-002 chr10 42379879 46999732 4619854 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, LINC00839, ZFAND4, GPRIN2, BMS1) 0.436022441964881 77 0.0742166426608405 1.01339865303134 1961 0.318060004529955 3 2 1 -6.80515274354208 LTS-002 chr10 46999733 46999747 15 * c(PTPN20, GLUD1P7, NA, NA, GPRIN2) 0.225 1 NA 1.718 1 NA NA NA NA NA LTS-002 chr10 46999748 47701299 701552 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, GPRIN2) 0.294325215896581 8 0.0987955139236017 1.15574501235248 148 0.457628000091888 4 4 0 -6.73616128947029 LTS-002 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 0.707 1 NA NA NA NA NA LTS-002 chr10 47755982 47915898 159917 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.0104164078649987 2 0.0403050865276332 0.44343173707284 10 0.501017642182167 20 20 0 -10.1949402862107 LTS-002 chr10 47915899 48025640 109742 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.456617693774463 30 0.343482477928173 0 NA NA -5.83851036298109 LTS-002 chr10 48025641 48370595 344955 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) 0.357 1 NA 1.22780900510149 21 0.508674416404798 5 5 0 -5.76524193007315 LTS-002 chr10 48370596 50189505 1818910 * c(ZNF488, FRMPD2, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.428616997068683 28 0.125377651738879 1.13250842930652 1123 0.423091664488033 4 2 2 -6.73963243486799 LTS-002 chr10 50189506 50190511 1006 * c(NA, WDFY4) NA 0 NA 0.663 1 NA NA NA NA NA LTS-002 chr10 50190512 52514702 2324191 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, SGMS1, C10orf53, NA, FAM21A, AGAP6, MSMB, NA, OGDHL, ASAH2, WDFY4, DRGX, AGAP7P, ASAH2B, SLC18A3, NA, PARGP1, NCOA4, PARG) 0.439576956829979 52 0.0740030572928429 1.00309207761894 1512 0.343079386590011 3 2 1 -6.82812716281806 LTS-002 chr10 52514703 63168072 10653370 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, PCDH15, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.459748257386843 42 0.081280675438678 1.08596346587416 2718 0.389091880894453 4 2 2 -7.01987207944655 LTS-002 chr10 63168073 74671611 11503539 * c(MIR1296, MIR1256, MIR4676, MIR548AV, MICU1, ANAPC16, COL13A1, ADAMTS14, OIT3, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, UNC5B, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, PALD1, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, NA NA NA NA NA NA NA NA NA LTS-002 PSAP, SAR1A, CDH23, PBLD, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, AIFM2, ADO, JMJD1C-AS1, SGPL1, MCU, DDX21, CHST3, VPS26A, SPOCK2) 0.442713038757692 170 0.0871352721698199 0.98460368834608 7246 0.276120052636387 3 2 1 -6.95150527461511 LTS-002 NA NA NA NA LTS-002 chr10 74671612 74767575 95964 * c(OIT3, P4HA1, PLA2G12B) 0.282 1 NA 0.991040074851419 87 0.178049830237439 3 3 0 -5.76639652142782 LTS-002 chr10 74767576 75214115 446540 * c(ECD, MSS51, CFAP70, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB) 0.201556822641921 9 0.149363650196425 0.975534459065526 831 0.237417302970805 4 4 0 -7.04578947604029 LTS-002 chr10 75214116 75406141 192026 * c(USP54, PPP3CB, MYOZ1, SYNPO2L) 0.398 1 NA 1.00714417593915 287 0.279892597671553 3 3 0 -5.76483300598845 LTS-002 chr10 75406142 82005771 6599630 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, PPIF, POLR3A, CHCHD1, COMTD1, ADK, SAMD8, EIF5AL1, FUT11, TMEM254-AS1, PLAC9, ZCCHC24, ZSWIM8, KAT6B, ZNF503-AS1, AP3M1, GLUD1P3, ZMIZ1-AS1, ANXA11, DUPD1, KCNMA1, C10orf55, LINC00595, LINC00857, DUSP13, PLAU, ZMIZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, CAMK2G, C10orf11, ZNF503, NDST2, MBL1P, DLG5, SEC24C NA NA NA NA NA NA NA NA NA LTS-002 ) 0.424547805238137 92 0.0851704475517663 0.998273471338687 3676 0.327931153224815 3 2 1 -6.77322520989423 LTS-002 NA NA NA NA LTS-002 chr10 82005772 82009627 3856 * character(0) 0.475 1 NA 0.393297928052801 42 0.418237386676995 0 0 0 -5.76792768985599 LTS-002 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.372 1 NA NA NA NA NA LTS-002 chr10 82012432 96818215 14805784 * c(PLCE1-AS1, KLLN, HECTD2-AS1, FAS-AS1, GRID1-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, NRG3, ADIRF, LDB3, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, DYDC1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, LINC00858, CPEB3, WAPL, TBC1D12, IFIT5, LRIT1, MYOF, PIPSL, ANKRD1, GHITM, GLUD1, FLJ37201, GRID1, HELLS, HHEX, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, NA NA NA NA NA NA NA NA NA LTS-002 IFIT2, IFIT1, IFIT3, FAS, KIF11, SH2D4B, C10orf99, SLC16A12, LIPA, MIR107, MAT1A, LINC00863, IFIT1B, MIR346, PLCE1, PDE6C, PANK1, CCSER2, EXOC6, FAM35A, MARCH5, PPP1R3C, CEP55, RNLS, PTEN, STAMBPL1, ACTA2, RBP4, RGR, FAM25A, NOC3L, LIPK, LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, TSPAN14, FAM213A, DYDC2, PCGF5, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, LGI1, CDHR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 OPN4, MINPP1, KIF20B) 0.445738764823482 190 0.0880327432375422 1.01784373194374 8050 0.302190654724823 3 2 1 -6.83047865098437 LTS-002 NA NA NA NA LTS-002 chr10 96818216 97772358 954143 * c(C10orf131, SORBS1, ACSM6, CYP2C8, TCTN3, CC2D2B, ALDH18A1, ENTPD1-AS1, PDLIM1, ENTPD1) 0.461946947170401 21 0.0266094326275835 0.941901587719067 869 0.228422828732329 2 1 1 -8.13811495689985 LTS-002 chr10 97772359 97818340 45982 * c(CC2D2B, CCNJ, ENTPD1-AS1) 0.414 1 NA 0.958443242126724 111 0.211812801933837 2 2 0 -5.7666313048371 LTS-002 chr10 97818341 98278823 460483 * c(MIR3157, DNTT, BLNK, CCNJ, TM9SF3, TLL2, ENTPD1-AS1, OPALIN, ZNF518A) 0.319268008292544 9 0.222135531701807 0.990523805213013 613 0.269026609700431 3 3 0 -6.73736377483309 LTS-002 chr10 98278824 98346604 67781 * TM9SF3 0.45 1 NA 0.894080956319247 133 0.20396814733299 2 2 0 -5.76449655102091 LTS-002 chr10 98346605 99619402 1272798 * c(FRAT1, SLIT1-AS1, ARHGAP19-SLIT1, MIR5692C2, HOGA1, PIK3AP1, MORN4, ZFYVE27, RRP12, FRAT2, C10orf12, ANKRD2, GOLGA7B, C10orf62, EXOSC1, PGAM1, PI4K2A, TM9SF3, AVPI1, MMS19, SFRP5, SLIT1, UBTD1, MARVELD1, ZDHHC16, LCOR, ARHGAP19) 0.439197753392524 33 0.0385841268980503 0.965242611349391 2005 0.246372101816433 2 1 1 -6.99230843208196 LTS-002 chr10 99619403 101816937 2197535 * c(DNMBP-AS1, MIR1287, MIR4685, ABCC2, COX15, CPN1, NKX2-3, DNMBP, CNNM1, R3HCC1L, GOT1, HPS1, GOLGA7B, CUTC, CRTAC1, ENTPD7, HPSE2, SLC25A28, LOXL4, PYROXD2) 0.435339638083766 30 0.0906622188733239 1.06497712614052 1613 0.314174868415249 3 2 1 -6.79707906049293 LTS-002 chr10 101816938 101823264 6327 * CPN1 NA 0 NA 0.926 1 NA NA NA NA NA LTS-002 chr10 101823265 105615074 3791810 * c(TLX1NB, KCNIP2-AS1, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SFXN2, BORCS7, CALHM3, CPN1, CYP17A1, FGF8, NT5C2, PDCD11, PPRC1, CALHM1, DPCD, SEC31B, POLL, BLOC1S2, KCNIP2, TLX1, LBX1-AS1, ARL3, NDUFB8, NFKB2, PAX2, CALHM2, SUFU, PITX3, CNNM2, WBP1L, CWF19L1, HIF1AN, SLF2, PSD, C10orf2, AS3MT, MIR146B, SEMA4G, SCD, FBXW4, SNORA12, NA NA NA NA NA NA NA NA NA LTS-002 TAF5, MIR608, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, TRIM8, KAZALD1, SFXN3, ELOVL3, PCGF6, LZTS2, MRPL43, USMG5, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, NEURL1, NOLC1, SH3PXD2A) 0.422399335031275 60 0.134242377136317 0.979027835881122 5971 0.266853813711981 3 2 1 -6.80234283647119 LTS-002 NA NA NA NA LTS-002 chr10 105615075 105657363 42289 * c(OBFC1, SH3PXD2A) 0.43 1 NA 0.960310338049421 21 0.246657377559971 2 2 0 -5.76601580669126 LTS-002 chr10 105657364 106675585 1018222 * c(MIR936, MIR4482, GSTO2, SFR1, COL17A1, CFAP58, SORCS3, MIR609, OBFC1, CFAP43, ITPRIP, GSTO1, SLK) 0.119551751058972 9 0.194250125125085 0.947306103524769 1089 0.275783924802838 3 3 0 -7.36511256971612 LTS-002 chr10 106675586 108338917 1663332 * c(SORCS1, SORCS3) 0.486 1 NA 1.14843495135585 189 0.285290715411313 4 4 0 -5.7644562729328 LTS-002 chr10 108338918 116856484 8517567 * c(MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, SMNDC1, SORCS1, ADD3, TRUB1, VTI1A, ADRA2A, ADRB1, DUSP5, ATRNL1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, TCF7L2, TECTB, XPNPEP1, PLEKHS1, SHOC2, CASP7, AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.448383530628673 86 0.0799818036761403 0.99747407474271 4043 0.305940395906438 3 2 1 -6.90162388081681 LTS-002 chr10 116856485 116881451 24967 * ATRNL1 NA 0 NA 1.292 1 NA NA NA NA NA LTS-002 chr10 116881452 119134195 2252744 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.452993470577616 35 0.0839536887143114 1.10256430980871 1468 0.330435254589231 4 2 2 -6.86370091592079 LTS-002 chr10 119134196 119134199 4 * PDZD8 NA 0 NA 0.969 1 NA NA NA NA NA LTS-002 chr10 119134200 121563903 2429704 * c(MIR4681, PRDX3, PDZD8, SFXN4, CACUL1, EMX2OS, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, EIF3A, BAG3) 0.458925464612335 14 0.0336125303689294 0.941990861757482 1339 0.224959883808204 2 1 1 -7.61961277433309 LTS-002 chr10 121563904 121564876 973 * INPP5F NA 0 NA 1.004 1 NA NA NA NA NA LTS-002 chr10 121564877 127585091 6020215 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, PLPP4, FAM24B, FGFR2, INPP5F, FAM175B, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, HTRA1, BCCIP, PLEKHA1, LHPP, IKZF5, UROS, MCMBP, NA NA NA NA NA NA NA NA NA LTS-002 C10orf88, BUB3, FAM53B) 0.436339913170805 83 0.0692481770198327 1.0244799578246 3978 0.354144724878444 3 2 1 -6.81406317766274 LTS-002 NA NA NA NA LTS-002 chr10 127585092 127585097 6 * character(0) 0.16 1 NA 0.085 1 NA NA NA NA NA LTS-002 chr10 127585098 127585263 166 * FANK1 0.287655718429331 9 0.100346621489936 0.38319738983163 13 0.343586681482719 4 4 0 -6.73404204930198 LTS-002 chr10 127585264 127668317 83054 * c(FANK1-AS1, FANK1) 0.487 1 NA 1.15070321554174 3 0.36421422267671 4 4 0 -5.76441588637033 LTS-002 chr10 127668318 134143942 6475625 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, LINC00959, FOXI2, LINC01164, MGMT, MKI67, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, ADAM12, FANK1) 0.44931596957578 71 0.0830071849693702 1.05755342646135 2247 0.415051052442868 3 2 1 -6.88287090880002 LTS-002 chr10 134143943 134143985 43 * STK32C 0.026 1 NA 1.23082917273501 3 0.242891608198664 5 5 0 -5.76441051378631 LTS-002 chr10 134143986 134693137 549152 * c(C10orf91, PWWP2B, STK32C, INPP5A, CFAP46, LRRC27, NKX6-2) 0.458026222270941 22 0.0327591235102555 1.03314276311909 539 0.28246092061155 4 2 2 -7.61789856160308 LTS-002 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.572 1 NA NA NA NA NA LTS-002 chr10 134694406 134884546 190141 * c(LINC01168, CFAP46, ADGRA1) 0.335051707535806 3 0.262185684836784 0.530729356751222 169 0.207831014596826 0 0 0 -6.91154373541438 LTS-002 chr10 134884547 134884560 14 * ADGRA1 NA 0 NA 1.568 1 NA NA NA NA NA LTS-002 chr10 134884561 135235321 350761 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.445081553275793 65 0.0501864935477204 0.995708651221287 1085 0.311073490638399 2 1 1 -6.94419454442421 LTS-002 chr10 135235322 135235370 49 * SPRN 0.306 1 NA 1.438 1 NA NA NA NA NA LTS-002 chr10 135235371 135473026 237656 * c(CYP2E1, SPRNP1, FRG2B, SPRN, SCART1, SYCE1) 0.310542412944736 10 0.0915117478797121 1.07919235089082 344 0.336775074898595 3 3 0 -6.74395508955834 LTS-002 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.353 1 NA NA NA NA NA LTS-002 chr11 193025 193096 72 * SCGB1C1 0.334 1 NA 0.696 1 NA NA NA NA NA LTS-002 chr11 193097 1012013 818917 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.419788156625024 135 0.080307797872408 0.862983328027106 2949 0.332505362637444 2 1 1 -6.74302545248192 LTS-002 chr11 1012014 1016869 4856 * c(AP2A2, MUC6) 0.384 1 NA 0.985892487384606 50 0.191808790843637 3 3 0 -5.764526180715 LTS-002 chr11 1016870 1016894 25 * MUC6 0.295 1 NA 1.09152505246141 3 0.535291820723363 4 4 0 -5.76441025474592 LTS-002 chr11 1016895 1018483 1589 * MUC6 0.290650994073453 33 0.0836867920682031 1.28912332387724 60 0.717576511993649 4 4 0 -6.73399146974588 LTS-002 chr11 1018484 1026048 7565 * MUC6 0.455 1 NA 0.853331785947728 57 0.214557265492079 2 2 0 -5.7647198402746 LTS-002 chr11 1026049 1283040 256992 * c(MUC2, MUC6, MUC5B) 0.371700160988766 62 0.0990462289705901 0.99810209386856 882 0.28989078897076 2 2 0 -6.75837498223487 LTS-002 chr11 1283041 3249984 1966944 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, MRGPRE, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MUC5B, MOB2, NA NA NA NA NA NA NA NA NA LTS-002 CARS, SYT8, BRSK2, CD81) 0.415538712821163 94 0.0669416167292943 0.898289596352679 2430 0.243280324943502 2 1 1 -6.73356343911315 LTS-002 NA NA NA NA LTS-002 chr11 3249985 3847293 597309 * c(OR7E12P, MRGPRE, ART5, PGAP2, ART1, NUP98, CHRNA10, TSSC2, TRPC2, ZNF195) 0.438 1 NA 0.880584514831049 559 0.222300557198102 2 2 0 -5.76880021123474 LTS-002 chr11 3847294 4470881 623588 * c(LOC100506082, MIR4687, OR52K2, OR52B4, PGAP2, RHOG, RRM1, TRIM21, STIM1) 0.350187369263961 3 0.281791293927498 0.935225036486477 364 0.244257181087518 2 2 0 -6.7418683632969 LTS-002 chr11 4470882 4470888 7 * OR52K2 NA 0 NA 1.164 1 NA NA NA NA NA LTS-002 chr11 4470889 5777005 1306117 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, MMP26, OR51G1, OR51B4, OR51B2, OR51G2, NA NA NA NA NA NA NA NA NA LTS-002 OR51E2, TRIM5) 0.413181211587116 89 0.0842244617622575 1.0447356785109 1926 0.385169277798096 3 2 1 -6.73558947930149 LTS-002 NA NA NA NA LTS-002 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.801 1 NA NA NA NA NA LTS-002 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.448894393711095 4 0.0247840674627875 1.60627852277991 51 0.562012728206992 17 9 8 -7.61689715122707 LTS-002 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.844 1 NA NA NA NA NA LTS-002 chr11 5817708 6221214 403507 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM5) 0.422182669464384 24 0.0412697032433855 1.04620073875135 370 0.383241676669429 4 2 2 -6.7586238074867 LTS-002 chr11 6221215 6231731 10517 * c(OR52W1, C11orf42) 0.433 1 NA 0.879014178125367 33 0.163805097138291 2 2 0 -5.76457399207182 LTS-002 chr11 6231732 8693616 2461885 * c(TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, RRP8, ARFIP2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR10A6, LMO1, CYB5R2, MRPL17, STK33, SMPD1, TAF10, TUB, ZNF214, ZNF215, RIC3, FAM160A2, PPFIBP2, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.412937719899771 67 0.0983928014340424 0.933097478023979 3998 0.235478835351008 2 1 1 -6.76317329791825 LTS-002 chr11 8693617 8693765 149 * character(0) NA 0 NA 0.877 1 NA NA NA NA NA LTS-002 chr11 8693766 17408324 8714559 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, NCR3LG1, KCNJ11, INSC, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, NA NA NA NA NA NA NA NA NA LTS-002 RPS13, LOC644656, RASSF10, ST5, SNORA23, SNORA3B, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.413323760642284 118 0.0927031778471695 0.884759548985018 5755 0.300017794905745 2 1 1 -6.75655377244042 LTS-002 NA NA NA NA LTS-002 chr11 17408325 17408409 85 * KCNJ11 NA 0 NA 0.984 1 NA NA NA NA NA LTS-002 chr11 17408410 17668713 260304 * c(USH1C, OTOG, KCNJ11, ABCC8) 0.420704890453919 31 0.0909848149920622 1.02407363969273 772 0.412473189961294 3 2 1 -6.74024932718238 LTS-002 chr11 17668714 17741069 72356 * character(0) NA 0 NA 0.611 1 NA NA NA NA NA LTS-002 chr11 17741070 18720551 979482 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, KCNC1, LDHA, LDHC, MYOD1, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.390096115448233 35 0.0646079059605327 0.852853547700291 1503 0.252958800344189 1 1 0 -6.82680462736148 LTS-002 chr11 18720552 18722483 1932 * TMEM86A NA 0 NA 0.943 1 NA NA NA NA NA LTS-002 chr11 18722484 31125360 12402877 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.410070445688808 103 0.112041368376504 0.974010957334118 3980 0.284310767601213 3 2 1 -6.95831408861842 LTS-002 chr11 31125361 31128374 3014 * c(DCDC5, DCDC1) NA 0 NA 0.731 1 NA NA NA NA NA LTS-002 chr11 31128375 36103228 4974854 * c(C11orf91, DCDC5, MIR3973, MIR1343, HIPK3, EIF3M, DNAJC24, LDLRAD3, CSTF3, IMMP1L, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, WT1-AS, TRIM44, NAT10, TCP11L1, RCN1, SLC1A2, WT1, PRRG4, QSER1, PDHX, CAT, DEPDC7, CD44, CD59) 0.426211066093382 71 0.0502780678291019 0.878455014248452 3939 0.247320120700009 2 1 1 -6.79139145629264 LTS-002 chr11 36103229 36251046 147818 * LDLRAD3 0.414 1 NA 0.9733203393495 25 0.156936292806986 3 3 0 -5.77380515654387 LTS-002 chr11 36251047 36311014 59968 * c(LDLRAD3, COMMD9) 0.229157828861134 9 0.236573455822922 0.929666997816161 161 0.451173223454265 5 5 0 -6.7601602877677 LTS-002 chr11 36311015 36422532 111518 * PRR5L 0.444 1 NA 0.796469675285705 7 0.458257361668975 1 1 0 -5.76453778580434 LTS-002 chr11 36422533 44959924 8537392 * c(MIR670, LOC100507205, ALKBH3-AS1, C11orf74, EXT2, ALKBH3, CD82, C11orf96, ACCSL, HNRNPKP3, MIR129-2, HSD17B12, TTC17, LRRC4C, RAG1, RAG2, ALX4, TRAF6, SEC14L1P1, PRR5L, ACCS, API5, TSPAN18, TP53I11) 0.396032136488411 48 0.0713500479605419 0.926939544451456 1686 0.246298030180531 2 1 1 -6.8409345374139 LTS-002 chr11 44959925 45264207 304283 * c(LOC221122, PRDM11, SYT13, TP53I11) 0 1 NA 0.940501028391033 153 0.363770326152641 2 2 0 -5.76675271243796 LTS-002 chr11 45264208 48346419 3082212 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, OR4X2, OR4B1, LARGE2, CRY2, C11orf94, DDB2, F2, NUP160, FNBP4, MTCH2, OR4S1, HARBI1, PACSIN3, DKFZp779M0652, OR4X1, ARHGAP1, FAM180B, LRP4, MDK, MYBPC3, NDUFS3, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PSMC3, SYT13, PTPRJ, RAPSN, SPI1, SNORD67, C11orf49, ZNF408, AGBL2, ARFGAP2, DGKZ, CHST1, MADD, CREB3L1, NA NA NA NA NA NA NA NA NA LTS-002 SLC39A13, PEX16, MAPK8IP1, ATG13, CKAP5) 0.338318028020108 24 0.17153374620452 0.8853265539779 4278 0.232357008956382 2 2 0 -6.75628800420031 LTS-002 NA NA NA NA LTS-002 chr11 48346420 48346423 4 * character(0) 0.387 1 NA 2.28 1 NA NA NA NA NA LTS-002 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.330970185759995 116 0.0849956114926735 1.66648086281883 193 0.98027267944621 9 7 2 -6.73559044362455 LTS-002 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-002 chr11 48388749 48510777 122029 * OR4A47 0.376722976215042 3 0.0375410886008029 1.04275531604081 24 0.797393270083159 7 5 2 -6.75429702753237 LTS-002 chr11 48510778 49075621 564844 * c(TRIM49B, OR4A47, TRIM64C) 0.455 1 NA 0.90661430941265 53 0.162022071549174 2 2 0 -5.76467369916403 LTS-002 chr11 49075622 51527695 2452074 * c(OR4C46, FOLH1, OR4C13, OR4C12, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.445343505489153 21 0.0540616491124892 0.977127694767962 387 0.377950587826381 2 1 1 -6.9648867200721 LTS-002 chr11 51527696 51527703 8 * character(0) NA 0 NA 1.008 1 NA NA NA NA NA LTS-002 chr11 55035776 55110843 75068 * c(TRIM51HP, TRIM48, OR4A16) 0.139 1 NA 1.35941824937741 7 2.41233785045999 6 6 0 -5.76441393842896 LTS-002 chr11 55110844 55111701 858 * OR4A16 0.237792966357442 20 0.0415357803903042 2.42097692775862 32 1.5682567213799 6 6 0 -6.73319634053323 LTS-002 chr11 55111702 55135435 23734 * OR4A15 0.372 1 NA 0.990012907849809 5 1.28369400559479 3 3 0 -5.76442019074116 LTS-002 chr11 55135436 55340582 205147 * c(OR4C16, OR4C15, OR4A15) 0.446807782605892 17 0.0336843042519981 1.18161133842925 82 0.446399266890389 4 2 2 -7.1874494066994 LTS-002 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.631 1 NA NA NA NA NA LTS-002 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.581149220928791 67 0.107033425755022 0 NA NA -5.80429795055583 LTS-002 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.819 1 NA NA NA NA NA LTS-002 chr11 55432533 55587212 154680 * c(OR4C6, OR5D14, OR5L1, OR5D18, OR5D13) 0.47496116630728 4 0.0212347984842491 1.09412174792623 96 0.247718414834759 4 2 2 -9.51233560129786 LTS-002 chr11 55587213 56143125 555913 * c(OR5I1, OR8I2, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8U8, OR8J3, TRIM51) 0.221 1 NA 1.01623783406366 503 0.223051831771368 3 3 0 -5.76483581602074 LTS-002 chr11 56143126 56143767 642 * OR8U8 0.249527516621165 11 0.123673176337695 1.97557728684171 23 0.934802566291227 17 14 3 -6.73413803865338 LTS-002 chr11 56143768 56185153 41386 * c(OR5R1, OR8U8) 0.48 1 NA 1.02805595879836 21 0.243346235796222 3 3 0 -5.76441554953266 LTS-002 chr11 56185154 57080764 895611 * c(APLNR, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR9G4, OR5AP2, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, TNKS1BP1) 0.387527755143005 30 0.0689326174399786 0.988394012776553 615 0.354332887268642 3 2 1 -6.80564718580374 LTS-002 chr11 57080765 57080863 99 * TNKS1BP1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-002 chr11 57080864 58381686 1300823 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, ZFP91-CNTF, OR5B2, OR5B12, MIR130A, OR5B3, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, ZFP91, OR10W1, SLC43A1, TNKS1BP1, UBE2L6, LPXN) 0.443474623108032 47 0.0391351934612893 0.925213734779281 1821 0.247159830796908 2 1 1 -7.0157566321168 LTS-002 chr11 58381687 58385752 4066 * c(ZFP91-CNTF, ZFP91) 0.133 1 NA 0.964521750312392 33 0.409388869184448 3 3 0 -5.76446287146426 LTS-002 chr11 58385753 61735714 3349962 * c(MIR1908, MIR3162, MIR4488, GLYAT, PTGDR2, RPLP0P2, CNTF, DDB1, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, FTH1, TKFC, DKFZP434K028, GIF, PRPF19, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, OSBP, MS4A13, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, NA NA NA NA NA NA NA NA NA LTS-002 SDHAF2, TMEM132A, VPS37C, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, PGA3, PGA4, STX3, MIR611, TCN1, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, ZFP91, OR10V2P, MS4A8, MS4A14, SYT7, CD5, GLYATL1, CD6, MS4A1, MS4A3, FADS2) 0.358345502503258 22 0.187900550513076 0.916830378370578 5028 0.23856372211001 2 2 0 -6.74188144019009 LTS-002 NA NA NA NA LTS-002 chr11 61735715 63410976 1675262 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, SCGB1D2, SCGB1D1, PLA2G16, CHRM1, SLC22A9, HRASLS5, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, INCENP, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, TUT1, SLC3A2, STX5, SNORA57, SCGB1A1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, ASRGL1, INTS5, LGALS12, MTA2, SNORD29, NA NA NA NA NA NA NA NA NA LTS-002 SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.367564030198037 25 0.164031775377008 0.867485862254905 3333 0.313872250467599 2 2 0 -6.74990673648142 LTS-002 NA NA NA NA LTS-002 chr11 63410977 63585804 174828 * c(RTN3, C11orf84, ATL3, C11orf95) 0.346 1 NA 0.8348673037811 247 0.171453671322873 1 1 0 -5.78043333630251 LTS-002 chr11 63585805 69063136 5477332 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, ALDH3B2, FKBP2, NA NA NA NA NA NA NA NA NA LTS-002 KDM2A, ATG2A, CLCF1, FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, PPP1R14B, MYEOV, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, MALAT1, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NDUFV1, NDUFS8, OVOL1, KCNK4, PC, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, SSH3, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, NAA40, TMEM134, MUS81, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 FOSL1, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.41994895165887 181 0.0727069671308583 0.873690642561981 12980 0.230053205703738 2 1 1 -6.79925767436845 LTS-002 NA NA NA NA LTS-002 chr11 69063137 69063393 257 * MYEOV 0.414 1 NA 0.902284370588487 5 0.208901412154155 2 2 0 -5.76441013490607 LTS-002 chr11 69063394 69954359 890966 * c(ORAOV1, FGF3, FGF4, MYEOV, ANO1, CCND1, FGF19) 0.421525445609763 11 0.135876615153067 0.873803093993858 395 0.277505470283734 2 1 1 -6.74114704684561 LTS-002 chr11 69954360 69954392 33 * ANO1 NA 0 NA 0.966 1 NA NA NA NA NA LTS-002 chr11 69954393 78369095 8414703 * c(KCNE3, LOC100129216, LOC100133315, KCTD21-AS1, MIR548K, MIR3165, MIR3664, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, CLNS1A, XRRA1, DHCR7, B3GNT6, CTTN, GDPD4, SHANK2-AS3, LRTOMT, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, NA NA NA NA NA NA NA NA NA LTS-002 OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, PAK1, COA4, PDE2A, PPME1, MRPL48, RSF1, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, ACER3, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, RAB6A, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, INTS4, SPCS2, ARHGEF17, GAB2, FCHSD2) 0.400661690010927 166 0.10210384150721 0.908832245711131 9235 0.242010267157908 2 1 1 -6.7513692051326 LTS-002 NA NA NA NA LTS-002 chr11 78369096 78369179 84 * TENM4 NA 0 NA 0.928 1 NA NA NA NA NA LTS-002 chr11 78369180 78567173 197994 * TENM4 0.448 1 NA 1.10196934459279 191 0.251325950889519 4 4 0 -5.7673225754187 LTS-002 chr11 78567174 88258626 9691453 * c(MIR708, SNORA70E, MIR4300, RAB30-AS1, LOC100506368, MIR5579, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, TENM4, RAB30, GRM5, ANKRD42, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, CREBZF, CCDC90B, CCDC81, TMEM135, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.423618468751582 35 0.061359294529925 0.852892481711047 2966 0.218081911449728 2 1 1 -7.10911052320296 LTS-002 chr11 88258627 88300245 41619 * GRM5 NA 0 NA 0.877 1 NA NA NA NA NA LTS-002 chr11 88300246 88910923 610678 * GRM5 0.423912687140486 5 0.0469329308694865 0.921727821130481 95 0.336492887232249 2 1 1 -6.74992819299203 LTS-002 chr11 88910924 89058556 147633 * c(NOX4, TYR) 0 1 NA 0.955317534283277 75 0.250957677778617 2 2 0 -5.7689515158444 LTS-002 chr11 89058557 93547177 4488621 * c(NAALAD2, MIR1304, MIR4490, SLC36A4, FAT3, TRIM64, DEUP1, FOLH1B, CHORDC1, C11orf54, TRIM77, MTNR1B, NOX4, SMCO4, TRIM49, SCARNA9, TRIM64B, TRIM49C, UBTFL1, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.337168728958311 39 0.156843733745135 0.944532747382135 1907 0.289011868801446 2 2 0 -6.81300767599963 LTS-002 chr11 93547178 93862493 315316 * c(PANX1, HEPHL1, VSTM5) 0.447 1 NA 0.912397433042081 237 0.221072950749359 2 2 0 -5.76486807476176 LTS-002 chr11 93862494 117780764 23918271 * c(LOC100132078, WTAPP1, NCAM1-AS1, BACE1-AS, MIR4301, MIR1260B, MIR3920, CASP12, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4693, LOC100652768, JRKL-AS1, LOC101054525, RBM7, YAP1, GPR83, CARD16, TMEM123, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, C11orf65, DDX10, DLAT, DRD2, FDX1, CEP164, ENDOD1, EXPH5, SIK2, SIK3, BACE1, CADM1, PANX1, NA NA NA NA NA NA NA NA NA LTS-002 FUT4, ANGPTL5, ANKK1, RNF214, REXO2, TIMM8B, LINC00900, GRIA4, GUCY1A2, BIRC2, BIRC3, HSPB2, APOA1, HTR3A, APOA4, C11orf53, APOC3, PLET1, IL18, ACAT1, IZUMO1R, KDM4E, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, CWC15, PGR, FXYD6, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ANKRD49, TTC12, PPP2R1B, C11orf57, ELMOD1, KDM4D, TEX12, DSCAML1, CEP126, ARHGAP20, USP28, PTS, CARD18, RDX, AASDHPPT, SDHD, MMP27, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, SLN, TAGLN, TRPC6, ZBTB16, DYNC2H1, CCDC82, ALG9, PDGFD, CUL5, TMPRSS5, CASP1, CASP4, CASP5, BCO2, TMEM133, TMPRSS13, DCUN1D5, MSANTD4, MAML2, BUD13, C11orf70, DIXDC1, ZC3H12C, JRKL, ZPR1, MTMR2, PCSK7, HTR3B, ALKBH8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZW10, FDXACB1, MMP20, CEP57) 0.417598579705257 292 0.0748361573205005 0.905793700478614 13741 0.240527852811351 2 1 1 -6.73642803863526 LTS-002 NA NA NA NA LTS-002 chr11 117780765 117781397 633 * TMPRSS13 NA 0 NA 0.605 1 NA NA NA NA NA LTS-002 chr11 117781398 119535098 1753701 * c(LOC100131626, USP2-AS1, MIR3656, TMPRSS4-AS1, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, MCAM, KMT2A, TRAPPC4, VPS11, TMPRSS4, IFT46, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, TMEM25, CBL, USP2, CD3D, CD3E, CD3G, UBE4A, C2CD2L NA NA NA NA NA NA NA NA NA LTS-002 ) 0.42271724760199 80 0.0544930375299497 0.868201347413518 4642 0.405736526984093 2 1 1 -6.75075838976653 LTS-002 NA NA NA NA LTS-002 chr11 119535099 122526601 2991503 * c(TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, NECTIN1, SC5D, LOC649133, SORL1, TECTA, UBASH3B) 0.433100304720831 43 0.0503009437196949 0.950671719805688 1892 0.385433671604616 2 1 1 -6.83115206812289 LTS-002 chr11 122526602 122647716 121115 * UBASH3B 0.397 1 NA 0.907928990869415 13 0.430670630885938 2 2 0 -5.76442408664173 LTS-002 chr11 122647717 134257766 11610050 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, DCPS, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, NA NA NA NA NA NA NA NA NA LTS-002 OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ESAM, EI24, FEZ1, ARHGAP32) 0.402078865090033 217 0.0942387625083524 0.927589721500155 8557 0.393759172509121 2 1 1 -6.78031295124364 LTS-002 NA NA NA NA LTS-002 chr11 134257767 134856681 598915 * c(B3GAT1, LOC283177) NA 0 NA 0.814551048837383 7 0.116352706805439 1 NA NA -5.81189624270865 LTS-002 chr12 90923 90953 31 * LOC100288778 0.297 1 NA 1.337 1 NA NA NA NA NA LTS-002 chr12 90954 1036125 945172 * c(LOC100288778, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, FAM138D, CCDC77) 0.398305293990866 22 0.144923423577069 1.18990452578712 1367 0.43323811718901 4 3 1 -6.74260937939183 LTS-002 chr12 1036126 1553797 517672 * c(ERC1, RAD52) 0.475 1 NA 1.22515288022054 147 0.236463844691403 5 5 0 -5.77098213122117 LTS-002 chr12 1553798 7244962 5691165 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, RPL13P5, LOC283440, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NDUFA9, NOP2, NTF3, COPS7A, ING4, MRPL51, TAPBPL, PLEKHG6, NA NA NA NA NA NA NA NA NA LTS-002 ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, SCNN1A, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CACNA2D4, CD27, NCAPD2) 0.453320454475654 175 0.0583646078959159 1.24252307645181 7066 0.502391281383511 5 3 2 -7.00079770860438 LTS-002 NA NA NA NA LTS-002 chr12 7244963 7246403 1441 * C1R 0.408 1 NA 1.24334976782407 11 0.178947376723895 5 5 0 -5.76442057559005 LTS-002 chr12 7246404 9590665 2344262 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, C1RL-AS1, CD163L1, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, C1RL, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, RBP5, CD163, CLEC6A, GDF3, CLSTN3) 0.397553551889468 81 0.138480144095253 1.20676411119017 2968 0.399155095533337 4 3 1 -6.76157483217147 LTS-002 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.065 1 NA NA NA NA NA LTS-002 chr12 9633155 9717789 84635 * character(0) NA 0 NA 0.0776489322428051 92 0.145965058748789 0 NA NA -10.3637256121036 LTS-002 chr12 9717790 11183451 1465662 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R31, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.422809236662152 58 0.112958184394304 1.14886417413604 1845 0.403369423781195 4 2 2 -6.73500892127445 LTS-002 chr12 11183452 11183642 191 * c(PRH1-PRR4, TAS2R31, PRB4) 0.235 1 NA 1.05662765353489 5 0.394900240567159 3 3 0 -5.76441083744914 LTS-002 chr12 11183643 11338539 154897 * c(SMIM10L1, PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, PRB4) 0.31662866892018 10 0.128493882258175 1.11881740935544 105 0.325748282558394 3 3 0 -6.74046308539353 LTS-002 chr12 11338540 11338555 16 * PRB4 0.408 1 NA 1.288 1 NA NA NA NA NA LTS-002 chr12 11338556 16342206 5003651 * c(LOC100506314, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, MANSC1, PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, FAM234B, PTPRO, PRB2, MIR613, MIR614, SLC15A5, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.460441669600268 62 0.048634079252389 1.19649522076351 3249 0.326550151134464 4 2 2 -7.24071863563642 LTS-002 chr12 16342207 21970263 5628057 * c(LOC100506393, ABCC9, MIR3974, SLCO1B1, AEBP2, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, MGST1, GOLT1B, PDE3A, PIK3C2G, SLCO1C1, PLEKHA5, LMO3, RECQL, SLCO1A2, SKP1P2, SLC15A5, RERGL, PYROXD1, SPX, PLCZ1, CAPZA3) 0.448220721740028 63 0.0800109855488591 1.27863163745376 2205 0.369571391264572 5 3 2 -6.84326973640122 LTS-002 chr12 21970264 21971080 817 * ABCC9 NA 0 NA 1.004 1 NA NA NA NA NA LTS-002 chr12 21971081 25380274 3409194 * c(MIR920, ABCC9, LINC00477, ETFRF1, C12orf77, KRAS, LRMP, CASC1, ETNK1, CMAS, BCAT1, ST8SIA1, SOX5, C2CD5) 0.426307927417379 29 0.121059627859733 1.07481382003428 1374 0.289163451382014 3 2 1 -6.79896837010394 LTS-002 chr12 25380275 25380280 6 * KRAS NA 0 NA 1.466 1 NA NA NA NA NA LTS-002 chr12 25380281 34180172 8799892 * c(MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, RASSF8, FGD4, LMNTD1, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, FGFR1OP2, SMCO2, OVCH1, SYT10, ITPR2, KRAS, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, BHLHE41, FLJ13224, SSPN, TMTC1, ALG10, PPFIBP1, MED21 NA NA NA NA NA NA NA NA NA LTS-002 ) 0.444627297860968 133 0.0761331920390338 1.23584891256893 5008 1.5260876709308 4 2 2 -6.8274027356952 LTS-002 NA NA NA NA LTS-002 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.27687678056548 15 0.276497343481598 5 NA NA -5.76441107789919 LTS-002 chr12 38710341 38710459 119 * character(0) 0.499 1 NA 0.45190293536628 5 0.28047049755723 0 0 0 -5.76453806678294 LTS-002 chr12 38710460 39735348 1024889 * c(ALG10B, CPNE8, KIF21A) 0.449653033116567 9 0.0275217086032907 1.23615058545499 341 0.309326920752168 4 2 2 -7.53929183912384 LTS-002 chr12 39735349 39997637 262289 * c(ABCD2, KIF21A) 0 1 NA 1.19334067475018 165 0.421031925729356 4 4 0 -5.76585134292713 LTS-002 chr12 39997638 42478757 2481120 * c(SLC2A13, LRRK2, CNTN1, ABCD2, C12orf40, GXYLT1, PDZRN4) 0.355317762981685 20 0.152969518807541 1.28807581253656 1646 0.390606891754922 5 4 1 -6.73556212022785 LTS-002 chr12 42478758 42481732 2975 * GXYLT1 0.5 1 NA 1.22598410512904 51 0.227627685348806 5 5 0 -5.76444933122137 LTS-002 chr12 42481733 50594947 8113215 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, PRICKLE1, BCDIN3D, ANO6, ARID2, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, RND1, GPD1, LOC283332, GXYLT1, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, DBX2, NELL2, DHH, PLEKHA8P1, IRAK4, NA NA NA NA NA NA NA NA NA LTS-002 FKBP11, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, TWF1, NCKAP5L, RNY5, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23) 0.436035295571497 147 0.104133459882745 1.19440911296478 8700 0.544713417990506 4 2 2 -6.78206413109521 LTS-002 NA NA NA NA LTS-002 chr12 50594948 50627937 32990 * c(MIR1293, LIMA1) 0 1 NA 1.17571045915953 49 0.373228178141983 4 4 0 -5.7645018945272 LTS-002 chr12 50627938 51386712 758775 * c(MIR1293, LARP4, FAM186A, METTL7A, TMPRSS12, ATF1, SLC11A2, LIMA1, DIP2B, HIGD1C) 0.340727428929773 9 0.198510355173505 1.21240345811276 963 0.388015258253984 5 4 1 -6.74140515871994 LTS-002 chr12 51386713 51441897 55185 * SLC11A2 0.492 1 NA 1.12518747649702 75 0.236426740458019 4 4 0 -5.76461308959413 LTS-002 chr12 51441898 52315923 874026 * c(GALNT6, CELA1, LETMD1, ANKRD33, FIGNL2, BIN2, POU6F1, SMAGP, SCN8A, TFCP2, CSRNP2, ACVRL1, SLC4A8, DAZAP2) 0.441186915917549 31 0.118373075258847 1.2404960662771 1257 0.334082384110777 5 3 2 -6.76705474089848 LTS-002 chr12 52315924 52370063 54140 * c(ACVR1B, ACVRL1) 0 1 NA 1.33539320025332 41 0.495686925436591 6 6 0 -5.76462165505094 LTS-002 chr12 52370064 54370720 2000657 * c(HOTAIR, LOC100652999, HOXC13-AS, ATF7, KRT71, SP7, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, HOXC11, HOXC12, HOXC13, KRT79, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, PCBP2, KRT76, CSAD, ATP5G2, PFDN5, PRR13, CALCOCO1, RARG, C12orf10, NA NA NA NA NA NA NA NA NA LTS-002 ATG101, SP1, TARBP2, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ACVR1B, KRT75, ESPL1) 0.367622653223167 14 0.195221274849454 1.23002902243604 4333 0.335800843875699 5 4 1 -6.7462443280113 LTS-002 NA NA NA NA LTS-002 chr12 54370721 54379670 8950 * HOXC10 0.486 1 NA 0.966110950863171 31 0.29072362813674 3 3 0 -5.76462792697277 LTS-002 chr12 54379671 58196528 3816858 * c(AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, OR6C74, OR6C3, B4GALNT1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, NA NA NA NA NA NA NA NA NA LTS-002 GLS2, GLI1, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PDE1B, IL23A, GPR84, PPP1R1A, PRIM1, NDUFA4L2, NEUROD4, RAB5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, MIR615, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, LACRT, MARCH9, COQ10A, CD63, TESPA1, ZBTB39, PAN2) 0.45516069263553 114 0.0788971825168552 1.21835525957665 9757 0.308897475569586 5 3 2 -6.93105647150574 LTS-002 NA NA NA NA LTS-002 chr12 58196529 58201785 5257 * c(TSFM, AVIL) 0 1 NA 1.29687594108238 32 0.752429859553957 5 5 0 -5.76441294896027 LTS-002 chr12 58201786 59308411 1106626 * c(LOC100506844, CTDSP2, AVIL, LRIG3, MIR26A2, ATP23) 0.300605620548968 26 0.165846175253317 1.20151072952529 414 0.447076609916008 4 4 0 -6.74422954348239 LTS-002 chr12 59308412 60113910 805499 * c(LRIG3, SLC16A7) 0.457 1 NA 1.14410663081749 39 0.237206046512361 4 4 0 -5.76443909535216 LTS-002 chr12 60113911 68646663 8532753 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, IL22, TMBIM4, AVPR1A, IL26, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, SLC16A7, HELB, USP15) 0.443967426174664 91 0.0908926012239993 1.23956296469884 4091 0.425100859392151 5 3 2 -6.81265117807457 LTS-002 chr12 68646664 68646980 317 * IL22 NA 0 NA 0.981 1 NA NA NA NA NA LTS-002 chr12 68646981 69238031 591051 * c(LOC100130075, SNORA70G, LOC100507250, MDM2, IL22, SLC35E3, MDM1, NUP107, RAP1B) 0.37387658943925 6 0.184491734232187 1.07373826480207 572 0.29351766456348 4 3 1 -6.75256842870599 LTS-002 chr12 69238032 75687106 6449075 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, CPM, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, MDM2, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.444132773736438 62 0.0752346321038045 1.25897116541614 3254 0.324015625857626 5 3 2 -6.83040623023872 LTS-002 chr12 75687107 77427665 1740559 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.426131366913912 19 0.111915747341131 1.1323855233241 1291 0.315745567383146 4 2 2 -6.73913433721185 LTS-002 chr12 77427666 77427764 99 * E2F7 NA 0 NA 1.232 1 NA NA NA NA NA LTS-002 chr12 77427765 88560382 11132618 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.460100834021845 27 0.0342765691235746 1.29575253037882 3300 0.435148850503249 5 3 2 -7.67996563812328 LTS-002 chr12 88560383 88566384 6002 * TMTC3 NA 0 NA 1.077 1 NA NA NA NA NA LTS-002 chr12 88566385 96284650 7718266 * c(PGAM1P5, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, CCDC38, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, DCN, EPYC, DUSP6, CCER1, LINC01619, POC1B, MRPL42, LINC00936, C12orf74, LUM, KITLG, LINC00615, PLEKHG7, MIR331, ATP2B1, CEP83, VEZT, FGD6, NDUFA12, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, SNRPF, BTG1, NR2C1, LOC728084, UBE2N, USP44, EEA1, GALNT4, CRADD, SOCS2) 0.451506299062576 70 0.0486960850136043 1.18970440494669 3541 0.334722124473241 4 2 2 -7.08701358397898 LTS-002 chr12 96284651 96284662 12 * CCDC38 0 1 NA 7.196 1 NA NA NA NA NA LTS-002 chr12 96284663 96387829 103167 * c(CCDC38, AMDHD1, HAL) 0.356823235406767 9 0.202940125269609 1.24161528369183 283 0.600968408356478 5 4 1 -6.73331887458891 LTS-002 chr12 96387830 96663147 275318 * c(ELK3, HAL, LTA4H) 0.467 1 NA 1.11176477389457 207 0.27906418177683 4 4 0 -5.76638421683128 LTS-002 chr12 96663148 104359647 7696500 * c(TMPO-AS1, MIR1827, MIR1251, MIR4303, MIR3652, DEPDC4, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, SLC5A8, FAM71C, RMST, UHRF1BP1L, SLC17A8, TTC41P, UTP20, GAS2L3, LINC00485, APAF1, IGF1, C12orf42, ARL1, MIR135A2, ASCL1, MYBPC1, SYCP3, PAH, CCDC53, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, DRAM1, STAB2, GOLGA2P5, SCYL2, ANKS1B, CHPT1, LOC643711, LOC643770, ACTR6, SNORA53, TDG, TMPO, HSP90B1, C12orf73, NUP37, NA NA NA NA NA NA NA NA NA LTS-002 GNPTAB, NR1H4) 0.416945784386302 73 0.139559919320232 1.21162560854406 4933 0.350832131033558 5 3 2 -6.81006246001269 LTS-002 NA NA NA NA LTS-002 chr12 104359648 104359931 284 * TDG 0.438 1 NA 0.667370673346427 5 0.372465703119093 0 0 0 -5.76441033699539 LTS-002 chr12 104359932 117593391 13233460 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, LOC100287944, MIR3922, LOC100505978, MIR4472-2, MIR4497, ARPC3, TRAFD1, ERP29, CKAP4, SDS, PRDM4, PWP1, FICD, SDSL, IQCD, C12orf45, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, RAD9B, FAM109A, ALDH1L2, PPTC7, CCDC63, DAO, DTX1, PLBD2, ALDH2, RPH3A, FBXO21, CUX2, KIAA1033, MED13L, ISCU, CORO1C, TCP11L2, TBX5-AS1, FBXW8, MYO1H, HECTD4, IFT81, FAM216A, HCFC2, ACACB, NA NA NA NA NA NA NA NA NA LTS-002 MMAB, TMEM119, C12orf75, CFAP73, C12orf76, MVK, MYL2, NFYB, ATP2A2, OAS1, EID3, OAS2, OAS3, CHST11, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, TPCN1, SSH1, TESC, PPP1CC, RIC8B, APPL2, SVOP, POLR3B, PTPN11, TRPV4, RFX4, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, TDG, LOC728739, TXNRD1, UNG, DDX54, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, SLC41A2, TCHP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 HVCN1, RASAL1, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, RBM19) 0.455686783425635 214 0.0633179738389169 1.20322864858745 12553 0.576837725849758 4 2 2 -7.01162677740531 LTS-002 NA NA NA NA LTS-002 chr12 117593392 117636032 42641 * FBXO21 0.273 1 NA 1.12825587563697 70 0.323251393749627 4 4 0 -5.76447115875377 LTS-002 chr12 117636033 118502467 866435 * c(KSR2, NOS1, VSIG10, WSB2, RFC5) 0.356853094074893 9 0.198061859023892 1.21457020810201 614 0.339655568781988 5 4 1 -6.74161231680126 LTS-002 chr12 118502468 118506186 3719 * VSIG10 0.459 1 NA 1.22375974130715 39 0.211773234460845 5 5 0 -5.76447300741183 LTS-002 chr12 118506187 120638512 2132326 * c(MIR1178, MIR4498, GCN1, RAB35, CIT, LINC00934, CCDC60, HSPB8, TMEM233, PEBP1, TAOK3, VSIG10, PRKAB1, RPLP0, SUDS3, SRRM4, BICDL1) 0.44612018953438 23 0.103987020321081 1.20418872298741 1710 0.322942545418345 4 2 2 -6.81147198154856 LTS-002 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 0.888 1 NA NA NA NA NA LTS-002 chr12 120638602 123737933 3099332 * c(MIR4304, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, ABCB9, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PITPNM2, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, RNF34, NA NA NA NA NA NA NA NA NA LTS-002 COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.448860868038502 102 0.0888113092502719 1.1594720685875 5469 0.332510615689379 4 2 2 -6.81451200099742 LTS-002 NA NA NA NA LTS-002 chr12 123737934 123892095 154162 * c(KMT5A, SBNO1, CDK2AP1, C12orf65) 0.233 1 NA 1.11204040280132 269 0.314221993659659 4 4 0 -5.76526803521833 LTS-002 chr12 123892096 124228540 336445 * c(MIR3908, TMED2, SNRNP35, RILPL2, EIF2B1, ATP6V0A2, GTF2H3, RILPL1, KMT5A, DDX55, TCTN2) 0.357081569362431 24 0.131359529867294 1.17611600874155 731 0.33329068481421 5 4 1 -6.74388565473796 LTS-002 chr12 124228541 124228694 154 * ATP6V0A2 NA 0 NA 1.395 1 NA NA NA NA NA LTS-002 chr12 124228695 124498728 270034 * c(ZNF664-FAM101A, ZNF664, DNAH10, ATP6V0A2, CCDC92) 0.335555139481246 6 0.243952795980425 1.23591879960555 714 0.374596283150461 5 4 1 -6.73685636038799 LTS-002 chr12 124498729 124799604 300876 * c(ZNF664-FAM101A, RFLNA, ZNF664) 0.488 1 NA 1.17318875533373 55 0.377861765470805 4 4 0 -5.76509441498843 LTS-002 chr12 124799605 133299221 8499617 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, GLT1D1, PGAM5, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NA NA NA NA NA NA NA NA NA LTS-002 NCOR2) 0.444837011229838 157 0.0908773741125481 1.26206406113966 4326 0.406385461846077 5 3 2 -6.80254440766536 LTS-002 NA NA NA NA LTS-002 chr12 133299222 133302217 2996 * PGAM5 NA 0 NA 0.86 1 NA NA NA NA NA LTS-002 chr12 133302218 133812682 510465 * c(ZNF605, ZNF891, ZNF268, ANKLE2, GOLGA3, CHFR, ANHX, ZNF10, ZNF140) 0.435930476054194 49 0.110826064924577 1.16628902728421 1534 0.306191606249744 4 2 2 -6.75265113161374 LTS-002 chr12 133812683 133812708 26 * character(0) NA 0 NA 0.762 1 NA NA NA NA NA LTS-002 chr13 19271620 19271676 57 * character(0) 0.436 1 NA 0.684 1 NA NA NA NA NA LTS-002 chr13 19271677 19943770 672094 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.458449897575581 21 0.0355222934695007 1.10336732224635 112 0.662669221 4 2 2 -7.47654215989322 LTS-002 chr13 19943771 20000598 56828 * TPTE2 0.048 1 NA 1.00425688528602 15 0.651551430561446 3 3 0 -5.76444171183608 LTS-002 chr13 20000599 21099828 1099230 * c(MIR4499, GJB6, GJA3, GJB2, CRYL1, MPHOSPH8, PSPC1, ZMYM2, ZMYM5, TPTE2) 0.298470852004154 10 0.202014988442827 0.905406453102457 726 0.246058114929919 2 2 0 -6.79033423079837 LTS-002 chr13 21099829 21189941 90113 * c(CRYL1, IFT88) 0.418 1 NA 0.902205473807675 65 0.292993577640298 2 2 0 -5.76441021465137 LTS-002 chr13 21189942 21722557 532616 * c(SAP18, EEF1AKMT1, LATS2, IL17D, XPO4, IFT88) 0.436907328033895 13 0.0535480852682655 0.90097904906728 505 0.234629435380974 2 1 1 -6.82004650207458 LTS-002 chr13 21722558 21727828 5271 * c(SAP18, SKA3) 0.235 1 NA 1.03240423421789 17 0.271068229960867 3 3 0 -5.7644127623561 LTS-002 chr13 21727829 21995330 267502 * c(SKA3, ZDHHC20, MIPEPP3, MRPL57) 0.294044553694708 16 0.0855732629583174 0.972189579834096 195 0.406762167493542 4 4 0 -6.7628929248495 LTS-002 chr13 21995331 23279254 1283924 * c(LINC00424, MICU2, FGF9, ZDHHC20) 0.494 1 NA 0.916363874856736 195 0.224677697551174 2 2 0 -5.76794074191714 LTS-002 chr13 23279255 28647573 5368319 * c(MIR2276, SACS-AS1, LINC00327, SPATA13-AS1, CDK8, CDX2, WASF3, PARP4, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, FLT3, SACS, SNORD102, GPR12, GTF3A, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, ATP12A, PABPC3, POLR1D, ATP8A2, C1QTNF9B-AS1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, SGCG, BASP1P1, TPTE2P1, URAD, MTMR6, NUP58) 0.397003997628944 100 0.114884076399216 0.952662539905512 3790 0.290812723885152 2 1 1 -6.85932573209383 LTS-002 chr13 28647574 28867563 219990 * c(PAN3-AS1, FLT3, PAN3) 0.417 1 NA 0.949192325668317 125 0.245345562750359 2 2 0 -5.76997780474344 LTS-002 chr13 28867564 33351227 4483664 * c(LINC00426, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, FLT1, MTUS2, ALOX5AP, PAN3, SLC46A3, HMGB1, LINC00544, POMP, UBL3, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1) 0.452652283064268 40 0.0444187243954965 0.922037837117506 2683 0.350098670108369 2 1 1 -7.11886167294893 LTS-002 chr13 33351228 41239962 7888735 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.430784810156702 98 0.0877397943508463 1.0007936952396 3104 0.330188706777555 3 2 1 -6.78769205356182 LTS-002 chr13 41239963 41240056 94 * FOXO1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-002 chr13 41240057 52483462 11243406 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, NA NA NA NA NA NA NA NA NA LTS-002 SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MTRF1) 0.436093660809361 83 0.0836877039682329 0.908986551006221 6070 0.280976667065991 2 1 1 -6.77052250665288 LTS-002 NA NA NA NA LTS-002 chr13 52483463 52492461 8999 * character(0) NA 0 NA 1.216 1 NA NA NA NA NA LTS-002 chr13 52492462 114538460 62045999 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, NA NA NA NA NA NA NA NA NA LTS-002 PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, DZIP1, DIS3, MYO16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.44545058660194 333 0.0833025483134782 1.02724641039361 14193 0.308259177315824 3 2 1 -6.83864305607959 LTS-002 NA NA NA NA LTS-002 chr13 114538461 114839373 300913 * c(GAS6-AS2, LINC00565, RASA3, GAS6, GAS6-AS1) NA 0 NA 0.977347223381118 201 0.234743145752143 3 NA NA -5.77163584865524 LTS-002 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.524 1 NA NA NA NA NA LTS-002 chr13 114897818 115092817 195000 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 0.818658803220114 223 0.194765544642043 1 NA NA -5.7713594574346 LTS-002 chr14 19434116 20216298 782183 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0.33 1 NA 1.3957062115274 35 0.366844168138842 6 6 0 -5.76447091214483 LTS-002 chr14 20216299 20471061 254763 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1, OR4K15) 0.39601192541651 19 0.0659004654386389 1.37300490828006 221 0.467571406654487 6 4 2 -6.73335349836254 LTS-002 chr14 20471062 22509019 2037958 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-002 TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.420720333974136 95 0.0923920549901773 0.927485151877514 3528 0.811669226426648 2 1 1 -6.73574155379635 LTS-002 NA NA NA NA LTS-002 chr14 22509020 22509081 62 * character(0) NA 0 NA 1.08 1 NA NA NA NA NA LTS-002 chr14 22509082 22991095 482014 * character(0) 0.418103154660484 21 0.105707435427986 1.15197211513353 602 0.310528597587711 4 2 2 -6.73326679041986 LTS-002 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.871 1 NA NA NA NA NA LTS-002 chr14 22992444 23497040 504597 * c(MIR4707, PRMT5, MRPL52, DAD1, REM2, LRP10, MMP14, OXA1L, HAUS4, RBM23, PSMB5, C14orf93, ABHD4, AJUBA, SLC7A7) 0.390698979294336 17 0.109668819634388 0.853379247641955 1218 0.203387876255373 2 1 1 -6.78858189240162 LTS-002 chr14 23497041 23502626 5586 * PSMB5 NA 0 NA 1.294 1 NA NA NA NA NA LTS-002 chr14 23502627 34081683 10579057 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, DHRS2, EFS, IRF9, CEBPE, TM9SF1, DHRS4, RIPK3, AP4S1, DTD2, DHRS1, CMTM5, CMA1, PSMB11, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, HECTD1, HEATR5A, NGDN, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NA NA NA NA NA NA NA NA NA LTS-002 NOVA1, NRL, EMC9, PCK2, GMPR2, SLC22A17, C14orf119, RNF31, DHRS4-AS1, G2E3, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, NPAS3, CBLN3, CDH24, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, ARHGAP5-AS1, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, AKAP6, REC8) 0.425704390548135 152 0.096367642431692 0.920551385430331 7600 0.241960461913399 2 1 1 -6.7807533075197 LTS-002 NA NA NA NA LTS-002 chr14 34081684 73989983 39908300 * c(MED6, SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4503, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, EXOC5, CGRRF1, CFL2, FERMT2, WDHD1, BAZ1A, MAP4K5, EGLN3, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, NA NA NA NA NA NA NA NA NA LTS-002 GPHB5, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, LRFN5, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, TMEM30B, MDGA2, SPTSSA, EIF2S1, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, PCNX1, DAAM1, SAMD4A, FAM179B, SYNE2, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, RALGAPA1, SFTA3, FBXO33, PLEKHG3, SIPA1L1, DCAF4, NKX2-8, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, IGBP1P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LINC00639, LINC01588, LINC00640, GPR137C, FAM177A1, GPX2, ERO1A, HIF1A, FOXA1, ADAM20P1, C14orf39, SNORD56B, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, HEATR4, FLJ22447, PLEKHD1, MAX, MGAT2, MIA2, MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, NFKBIA, SIX6, OTX2, PAX9, ATL1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, PNN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, AP5M1, PRKCH, EAPP, ACTR10, PSEN1, PSMA3, PSMA6, CCDC177, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, TRMT5, FANCM, PYGL, RBM25, SNX6, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NPAS3, SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SRP54, SSTR1, ZFP36L1, STYX, NKX2-1, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, DPF3, SGPP1, TMX1, SYT16, FSCB, BRMS1L, INSM2, GEMIN2, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, SLC25A21, PAPLN, NEMF, CHURC1, MAPK1IP1L, AKAP5, RGS6, KIAA0391, SUSD6, KIAA0586, DLGAP5) 0.402071963763004 381 0.102060907181411 0.881337839576782 22540 0.260716000577476 2 1 1 -6.93729978154234 LTS-002 NA NA NA NA LTS-002 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.433 1 NA NA NA NA NA LTS-002 chr14 74003792 74058984 55193 * c(ACOT2, ACOT4, HEATR4, ACOT1) 0.334080341551645 2 0.0106066017177982 0.651227096936204 100 0.383085305134641 12 9 3 -7.31475340903061 LTS-002 chr14 74058985 78227532 4168548 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, GPATCH2L, YLPM1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, ACOT6, IRF2BPL, SYNDIG1L, TGFB3, LINC01220, ZC2HC1C, NA NA NA NA NA NA NA NA NA LTS-002 BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, ALKBH1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.428366594462132 124 0.0879300320276821 0.874086375024541 6302 0.5946715229056 2 1 1 -6.75142335238544 LTS-002 NA NA NA NA LTS-002 chr14 78227533 78234649 7117 * C14orf178 NA 0 NA 2.828 1 NA NA NA NA NA LTS-002 chr14 78234650 88729909 10495260 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GALC, C14orf178, LOC283585, LINC01146, GTF2A1, KCNK10, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.431346133750107 63 0.0462325318861978 0.971152430798152 1858 0.298921806820147 3 2 1 -7.04430377289853 LTS-002 chr14 88729910 88729931 22 * KCNK10 0.444 1 NA 0.421 1 NA NA NA NA NA LTS-002 chr14 88729932 106758131 18028200 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, FBLN5, SIVA1, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, NA NA NA NA NA NA NA NA NA LTS-002 GSC, SERPINA12, PRIMA1, TTC7B, SYNE3, EML5, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, FOXN3-AS2, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, LINC00226, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 FOXN3-AS1, LINC00642, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, CDCA4, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, KCNK13, C14orf132, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZFYVE21, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, TMEM121, GPR68, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, BTBD6, EFCAB11, MTA1, EXOC3L4, WDR20, RPS6KA5, TRIP11, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2, GOLGA5) 0.417932095101766 448 0.089390861867881 0.894375313307714 17559 0.266874017093095 2 1 1 -6.74569030463358 LTS-002 NA NA NA NA LTS-002 chr14 106758132 106791119 32988 * character(0) 0.243 1 NA 1.14446893147065 6 0.587182226116107 4 4 0 -5.76441026720939 LTS-002 chr14 106791120 107035142 244023 * LINC00221 0.306588142510246 25 0.0812455126965996 1.11274055159077 135 0.545374709025718 3 3 0 -6.75466805605495 LTS-002 chr14 107035143 107283157 248015 * character(0) NA 0 NA 0.803883136516442 87 0.225792048541816 1 NA NA -5.76691163471486 LTS-002 chr15 20169987 20445987 276001 * character(0) 0.162 1 NA 0.877059687800704 23 0.874641948199037 2 2 0 -5.76458748688373 LTS-002 chr15 20445988 22413825 1967838 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.318641781451546 22 0.101000492905231 0.846469752293494 212 0.686490559883314 3 3 0 -6.82310831737039 LTS-002 chr15 22413826 22413879 54 * OR4N3P NA 0 NA 0.572 1 NA NA NA NA NA LTS-002 chr15 22413880 22833673 419794 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, OR4N3P, REREP3) 0.365207907135966 2 0.0226274169979695 0.573394360132733 66 0.356451233436191 2 2 0 -7.13482960970081 LTS-002 chr15 22833674 22835934 2261 * TUBGCP5 NA 0 NA 2.044 1 NA NA NA NA NA LTS-002 chr15 22835935 32450812 9614878 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-002 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, LOC100288637, LOC100289656, MIR4508, MIR4715, CHRNA7, TUBGCP5, NIPA1, PWAR1, OTUD7A, FAN1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, DKFZP434L187, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LOC283683, LOC283710, GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P10, HERC2P2, MIR211, TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, KLF13, MAGEL2, MTMR10, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8S, GOLGA8T, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF, CHRFAM7A, ARHGAP11B) 0.295075830337609 69 0.0769035528209695 0.936578791026501 4041 0.312922010611677 2 2 0 -7.22577459191982 LTS-002 NA NA NA NA LTS-002 chr15 32450813 32451764 952 * CHRNA7 NA 0 NA 0.014 1 NA NA NA NA NA LTS-002 chr15 32451765 32464575 12811 * CHRNA7 0.28 1 NA 0.470054229428605 50 0.38680340890801 0 0 0 -5.77026077909658 LTS-002 chr15 32464576 32620053 155478 * character(0) NA 0 NA 1.031 1 NA NA NA NA NA LTS-002 chr15 32620054 39891084 7271031 * c(WHAMMP1, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, CHRM5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FAM98B, FMN1, C15orf53, C15orf54, MEIS2, GOLGA8B, EMC4, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, THBS1, ANP32AP1, GOLGA8O, KATNBL1, C15orf41, DPH6, AQR, ARHGAP11A, SLC12A6) 0.326272854520655 106 0.0613916952980802 0.905658237797866 3895 0.292746784048078 2 2 0 -6.92119480966191 LTS-002 chr15 39891085 39891359 275 * character(0) NA 0 NA 0.546 1 NA NA NA NA NA LTS-002 chr15 39891360 41864659 1973300 * c(SRP14-AS1, ANKRD63, RAD51-AS1, GPR176, CHP1, CHST14, OIP5, EXD1, FSIP1, RHOV, BAHD1, RTF1, RPAP1, GCHFR, RPUSD2, MRPL42P5, ITPKA, IVD, C15orf52, LTK, EIF2AK4, NDUFAF1, NUSAP1, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, BUB1B, OIP5-AS1, TYRO3, CHAC1, ZFYVE19, DISP2, C15orf57, KNSTRN, BMF) 0.307994502962369 67 0.0722008355304079 0.854603346560704 4024 0.248021381025655 2 2 0 -7.09844161439325 LTS-002 chr15 41864660 41871537 6878 * TYRO3 0.272 1 NA 1.58440231853818 54 0.74246290709617 8 8 0 -5.7644171265063 LTS-002 chr15 41871538 41961082 89545 * MGA NA 0 NA 0.952 1 NA NA NA NA NA LTS-002 chr15 41961083 54847668 12886586 * c(MIR147B, GABPB1-AS1, LOC100129973, DCAF13P3, JMJD7, PLA2G4B, BCL2L10, MIR1266, MIR1282, NDUFAF4P1, MIR4310, SERF2-C15ORF63, MIR4716, MIR4713, MIR4712, SERF2, GNB5, ARPP19, SLC27A2, CASC4, CKMT1B, TGM7, CATSPER2, LEO1, PLA2G4E, TRIM69, TERB2, NA, ZSCAN29, TTBK2, CDAN1, CYP19A1, STRC, ADAL, DUT, FAM227B, UBR1, PATL2, EPB42, FBN1, FGF7, CEP152, MAPKBP1, MGA, DMXL2, VPS39, AP4E1, CCNDBP1, EID1, PLA2G4F, NA NA NA NA NA NA NA NA NA LTS-002 LRRC57, GABPB1, LYSMD2, WDR72, HYPK, GALK2, GANC, TMEM87A, BLOC1S6, GATM, TUBGCP4, HMGN2P46, SLC24A5, PLA2G4D, SCG3, PDIA3, TMOD3, TMOD2, HDC, EHD4, ONECUT1, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, DUOXA2, MAP1A, MFAP1, CATSPER2P1, UNC13C, MYO5A, DUOX2, MYEF2, SPTBN5, CTDSPL2, DUOX1, TRPM7, CKMT1A, FLJ10038, HAUS2, MYO5C, MAPK6, FAM214A, B2M, DTWD1, STARD9, SQRDL, SERINC4, ZNF106, EIF3J-AS1, SLC12A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SORD, MIR626, MIR627, TP53BP1, PIN4P1, SLC30A4, SPATA5L1, ATP8B4, WDR76, TMEM62, SEMA6D, SPG11, ELL3, CAPN3, C15orf48, SPPL2A, FRMD5, EIF3J, JMJD7-PLA2G4B, SNAP23, SHF, DUOXA1, USP8, SLC28A2, COPS2, TGM5, PPIP5K1, SECISBP2L, LCMT2) 0.300890456757537 146 0.0920290523740691 0.891585359747435 13840 0.287461687736293 2 2 0 -6.99365452353605 LTS-002 NA NA NA NA LTS-002 chr15 54847669 70949153 16101485 * c(USP3-AS1, MIR1272, MIR548H4, MIR2116, MIR4311, MIR4312, IQCH-AS1, DYX1C1-CCPG1, MIR4511, PDCD7, MYZAP, FEM1B, ADAM10, DENND4A, SNAPC5, CORO2B, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DRAIC, C15orf61, DYX1C1, MGC15885, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, GLCE, PYGO1, FOXB1, PRTG, LINC00926, EWSAT1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, TEX9, C2CD4B, KBTBD13, NA NA NA NA NA NA NA NA NA LTS-002 UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, LINC00593, UNC13C, MYO1E, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, PAQR5, DPP8, PARP16, TIPIN, CLN6, ZWILCH, UACA, MNS1, MAP2K1, MAP2K5, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, RPLP1, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, MIR629, TCF12, TLE3, TPM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CA12, NOX5, ICE2, AAGAB, SLTM, SNX22, ANP32A-IT1, PIF1, PLEKHO2, ANP32A, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, KIF23, IGDCC3, KIAA0101, USP3) 0.338278401447103 256 0.0830678728953194 0.780056119282431 13250 0.222489362477141 1 1 0 -7.07413123232257 LTS-002 NA NA NA NA LTS-002 chr15 70949154 102516492 31567339 * c(NR2E3, FAM138E, DNM1P35, NA, UBE2Q2P2, LINC00930, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR1469, MIR3175, MIR4313, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, MIR4714, SPATA8-AS1, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, AP3S2, HMG20A, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, CHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, NA NA NA NA NA NA NA NA NA LTS-002 CHRNB4, CLK3, C15orf40, SENP8, TARSL2, HIGD2B, LRRC28, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, ASB7, CSK, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, NRG4, LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ADAMTS17, ACAN, SCAMP5, DNM1P46, CT62, GRAMD2, CERS3, ETFA, FAH, ALDH1A3, FES, CHSY1, TBC1D2B, MESDC2, ACSBG1, KIAA1024, SYNM, TMED3, SEC11A, GABARAPL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, FBXO22, VPS33B, MRPL46, OR4F4, NPTN, SLCO3A1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, FAM169B, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ZNF774, IGF1R, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, ZNF710, HDDC3, WASH3P, C15orf59, GOLGA2P7, UBE2Q2P1, SPATA41, ANKRD34C, GDPGP1, OR4F6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 OR4F15, OR4F13P, ADAMTS7P1, ST20, FAM174B, LINC01197, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2A2, MAN2C1, MEF2A, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, MYO9A, NEO1, NMB, NTRK3, SCAPER, FURIN, PCSK6, HDGFRP3, NGRN, RHCG, PDE8A, PKM, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, LRRC49, RPP25, COMMD4, ZSCAN2, DET1, UACA, LINS1, FANCI, IMP3, LARP6, DNAJA4, MCTP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SELENOS, GOLGA6B, MESP1, UNC45A, PSMA4, C15orf39, THAP10, RGMA, WDR93, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, CELF6, BLM, STRA6, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, ISL2, EFTUD1P1, TTC23, MRPS11, GOLGA6C, GOLGA6D, SNRPA1, SCARNA15, FBXO22-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MIR549A, MIR630, MIR631, NR2F2, HSP90B2P, AGBL1-AS1, ASB9P1, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LRRK1, LMAN1L, PEAK1, THSD4, HEXA-AS1, CCDC33, EDC3, TM2D3, WDR61, CD276, STARD5, AP3B2, ST8SIA2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PEX11A, IQGAP1, TICRR, PSTPIP1, PRC1, RCCD1, LOC91450, SLC28A1, ARRDC4, LINC00923, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, SV2B, ARNT2 NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ) 0.302943969540259 455 0.0855594571044303 0.903862560236648 22881 0.275138266091167 2 2 0 -6.99906714484636 LTS-002 NA NA NA NA LTS-002 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.472 1 NA NA NA NA NA LTS-002 chr16 81704 97354 15651 * POLR3K 0.36 1 NA 1.21955983109878 15 0.485351840960565 5 5 0 -5.76447073431904 LTS-002 chr16 97355 2653090 2555736 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-002 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.372093541448933 255 0.0774086605338485 0.979718582267119 8205 0.282604282546724 2 2 0 -6.87162267716726 LTS-002 NA NA NA NA LTS-002 chr16 2653091 2653094 4 * PDPK1 NA 0 NA 0.747 1 NA NA NA NA NA LTS-002 chr16 2653095 2747930 94836 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.331824375700473 2 0.0770746391493337 0.679335878889297 86 0.564974926141207 3 3 0 -6.7752303324125 LTS-002 chr16 2747931 3100095 352165 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, CLDN6, CLDN9, PKMYT1) 0.407754559038936 29 0.0580822840816193 1.00827249246432 1063 0.273000635834781 3 2 1 -6.735302787627 LTS-002 chr16 3100096 3117937 17842 * c(MMP25, IL32) 0.451 1 NA 1.01891151257926 71 0.157552811879659 3 3 0 -5.76442243696321 LTS-002 chr16 3117938 15069171 11951234 * c(MIR365A, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, VASN, ADCY9, RMI2, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, PDXDC1, CLUAP1, CLEC16A, MGRN1, NOMO1, CARHSP1, TMEM186, ZNF500, RSL1D1, OR1F2P, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, BCAR4, MEFV, CIITA, NA NA NA NA NA NA NA NA NA LTS-002 SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, PMM2, RBFOX1, ZSCAN32, PPL, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, NPIPA3, C16orf90, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PLA2G10, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, DNAJA3, TIGD7, SNX29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 IL32, NPIPA1, LITAF, SEC14L5) 0.368025384142463 191 0.0935279541279601 0.991701179654968 7355 0.595946019815271 3 2 1 -6.87664927639342 LTS-002 NA NA NA NA LTS-002 chr16 15069172 15082015 12844 * PDXDC1 NA 0 NA 1.442 1 NA NA NA NA NA LTS-002 chr16 15082016 15123936 41921 * PDXDC1 0.267849544730442 3 0.0398789836045671 1.36888723137662 104 0.330910189323415 5 5 0 -6.75782734157401 LTS-002 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 1.033 1 NA NA NA NA NA LTS-002 chr16 15125636 28608392 13482757 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-002 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.37043222862969 203 0.101833312372498 1.00418193964523 9706 0.295104768568912 3 2 1 -6.86206707276999 LTS-002 NA NA NA NA LTS-002 chr16 28608393 28621415 13023 * SULT1A1 NA 0 NA 0.497860136519068 41 0.123887089624423 0 NA NA -5.80410550308077 LTS-002 chr16 28621416 28631284 9869 * SULT1A1 NA 0 NA 1.096 1 NA NA NA NA NA LTS-002 chr16 28631285 32893984 4262700 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, NA NA NA NA NA NA NA NA NA LTS-002 ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A1, SULT1A3, TBX6, TGFB1I1, TUFM, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.36435660923834 78 0.101873807039752 0.971371723058771 6760 0.263404802601963 2 2 0 -6.92649243481388 LTS-002 NA NA NA NA LTS-002 chr16 32893985 32896544 2560 * c(SLC6A10P, LOC390705) NA 0 NA 0.582 1 NA NA NA NA NA LTS-002 chr16 32896545 33425055 528511 * LOC390705 0.312131964964988 3 0.0718957578720748 0.631549933000089 44 0.907728531379708 3 3 0 -6.83041266186207 LTS-002 chr16 33425056 33500841 75786 * character(0) NA 0 NA 0.984 1 NA NA NA NA NA LTS-002 chr16 33500842 33539634 38793 * character(0) 0.358711401521633 4 0.069949386463833 0.915710516954452 10 0.416433801595297 2 2 0 -6.73378134237309 LTS-002 chr16 33539635 33961138 421504 * LINC00273 0.411 1 NA 0.887397944183061 81 0.287113660441898 2 2 0 -5.7652867715684 LTS-002 chr16 33961139 33961448 310 * LINC00273 0.29442048055868 11 0.0984442620332578 0.817165595645093 19 0.259409416972544 7 6 1 -6.73499875142924 LTS-002 chr16 33961449 33961453 5 * LINC00273 0.338 1 NA 0.299 1 NA NA NA NA NA LTS-002 chr16 33961454 34256927 295474 * LINC00273 0.332650642838136 62 0.0854524648213892 0.599702974863422 105 0.367586099156429 2 2 0 -7.0105801055452 LTS-002 chr16 34256928 34682193 425266 * c(LINC01566, UBE2MP1) 0.426 1 NA 1.14797431133007 103 0.437474746490431 4 4 0 -5.76441329082595 LTS-002 chr16 34682194 34682380 187 * character(0) NA 0 NA 1.11409400564562 5 0.0250359741172577 4 NA NA -5.76455392704708 LTS-002 chr16 46508169 46534637 26469 * ANKRD26P1 0.409 1 NA 1.14483358364843 41 0.456961890656316 4 4 0 -5.76441024435441 LTS-002 chr16 46534638 70516109 23981472 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00919, LINC00920, SMG1P7, LOC100506083, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, DDX19B, ADCY7, CMTM1, EXOSC6, NRN1L, CMTM3, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, CYLD, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, NA NA NA NA NA NA NA NA NA LTS-002 CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, CES3, ARL2BP, ORC6, EDC4, PLA2G15, CNEP1R1, COG4, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, PHKB, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, HEATR3, PDPR, SLC38A7, OGFOD1, LRRC36, DDX19A, FBXL8, SMPD3, DOK4, VPS35, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CX3CL1, NOD2, PDF, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, ST3GAL2, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SHCBP1, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, CYB5B, ITFG1, GFOD2, NETO2, LONP2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 GPT2, B3GNT9, UTP4, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1, CDH1) 0.36443852058933 316 0.0828927838392344 0.977995268835737 17163 0.535245319054001 3 3 0 -7.00086576341936 LTS-002 NA NA NA NA LTS-002 chr16 70516110 70530359 14250 * COG4 0.492 1 NA 1.11578559480715 25 0.172798707556895 4 4 0 -5.76461733736024 LTS-002 chr16 70530360 71423487 893128 * c(SNORD111B, VAC14-AS1, IL34, SF3B3, COG4, HYDIN, VAC14, CMTR2, SNORD111, CALB2, MTSS1L) 0.429887151555769 97 0.0813602278994399 1.05467993170075 1331 0.361325984933071 3 2 1 -6.76963969758356 LTS-002 chr16 71423488 71466088 42601 * CALB2 0.382 1 NA 0.985372013472702 37 0.206731593985902 3 3 0 -5.7653109091227 LTS-002 chr16 71466089 86585939 15119851 * c(LOC100129617, SYCE1L, MIR1910, SNORA70D, MIR3182, LINC01568, MIR4720, MIR4719, MIR5093, CDH13, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, COX4I1, SLC38A8, LOC146513, CTRB1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LINC00311, LDHD, MLKL, MON1B, FOXF1, PHLPP2, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, OSGIN1, HP, HPR, NA NA NA NA NA NA NA NA NA LTS-002 HSBP1, HSD17B2, FAM92B, IRF8, ATXN1L, PKD1L3, KARS, LOC400548, FENDRR, C16orf74, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, GINS2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, TXNL4B, RFWD3, ZNF821, ZDHHC7, CENPN, CMC2, PSMD7, VAT1L, TLDC1, WFDC1, MTHFSD, TAT, SNORD71, LINC00917, ZNF19, ZNF23, FA2H, TMEM231, WDR59, KLHL36, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, ZNRF1, CNTNAP4, MBTPS1, TAF1C, USP10, MARVELD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KCNG4, SDR42E1, BCAR1, KIAA0513, DHX38, IST1, ATP2C2) 0.373504897144902 292 0.0831156012599913 0.987581443299994 8064 0.295435406364098 3 2 1 -6.98685589187899 LTS-002 NA NA NA NA LTS-002 chr16 86585940 86588249 2310 * MTHFSD NA 0 NA 0.918 1 NA NA NA NA NA LTS-002 chr16 86588250 90161164 3572915 * c(VPS9D1-AS1, URAHP, LOC100287036, C16orf95, MIR4722, MIR5189, CDH15, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, SLC22A31, FLJ30679, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, TCF25, FOXL1, FOXC2, ZCCHC14, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MC1R, MVD, CHMP1A, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, MTHFSD, SPG7, NA NA NA NA NA NA NA NA NA LTS-002 GAS8-AS1, CA5A, DBNDD1, FBXO31, SLC7A5, CDT1, MAP1LC3B, SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, PIEZO1) 0.375077770426715 177 0.0841550605533839 0.934358758828271 4852 0.575906652235252 2 2 0 -6.75719739023257 LTS-002 NA NA NA NA LTS-002 chr16 90161165 90161242 78 * character(0) NA 0 NA 1.60116994520284 4 0.559452410844747 8 NA NA -5.7644101939063 LTS-002 chr17 6004 131709 125706 * c(DOC2B, RPH3AL) 0.326 1 NA 0.802694762462289 79 0.182187292839496 1 1 0 -5.76616595538145 LTS-002 chr17 131710 8352020 8220311 * c(LOC100128288, C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, NA NA NA NA NA NA NA NA NA LTS-002 RTN4RL1, ODF4, KCTD11, CTNS, TRPV3, SLC16A11, FBXO39, DLG4, DPH1, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, TUSC5, GPS2, ABR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PLD2, SERPINF2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RPA1, RPL26, SRR, NXN, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, SCARF1, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.332436288533216 368 0.0705460246128322 0.820749580029612 15064 0.28915231374932 2 2 0 -7.32066018724438 LTS-002 NA NA NA NA LTS-002 chr17 8352021 8354087 2067 * NDEL1 NA 0 NA 0.916 1 NA NA NA NA NA LTS-002 chr17 8354088 12917834 4563747 * c(MIR744, LINC00675, MAGOH2P, TMEM220-AS1, USP43, CFAP52, CCDC42, PIK3R6, MFSD6L, DNAH9, DHRS7C, PIK3R5, LINC00670, SPDYE4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, NDEL1, GAS7, MYH13, GLP2R, MYOCD, NTN1, STX8, ARHGAP44) 0.298134930791079 71 0.0994277611035691 0.878865912558322 3685 0.234806045316303 2 2 0 -6.9996236359316 LTS-002 chr17 12917835 16665781 3747947 * c(MIR1288, TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CDRT15, USP32P1, TVP23C, CENPV, SNORD49A, CDRT4, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, PMP22, TTC19, ZNF286A, ZNF287, ZNF624, ELAC2, CDRT15P2, TEKT3, SNORD49B, SNORD65, UBB, MGC12916, CDRT7, CDRT15P1, PIGL, NCOR1, CCDC144A, HS3ST3B1, HS3ST3A1) 0.339999958743207 73 0.076100997839359 0.818245831258464 2164 0.254216115762152 2 2 0 -7.09604841630113 LTS-002 chr17 16665782 16667294 1513 * c(USP32P1, CCDC144A) NA 0 NA 1.336 1 NA NA NA NA NA LTS-002 chr17 16667295 16843102 175808 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) 0.410081476214961 2 0.0247487373415291 1.46967354407734 46 0.787746656103914 10 6 4 -6.74495937456288 LTS-002 chr17 16843103 18315385 1472283 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.312997778298099 23 0.0615230603637509 0.837334511365067 2662 0.222331576517055 2 2 0 -7.17842219372465 LTS-002 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.069 1 NA NA NA NA NA LTS-002 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.201541900668136 69 0.209787474158315 0 NA NA -6.97381420609651 LTS-002 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.922 1 NA NA NA NA NA LTS-002 chr17 18483256 20903080 2419825 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, SPECC1, ULK2) 0.323263578126438 43 0.0710887564645849 0.823658695556698 2341 0.251730634999867 2 2 0 -7.08441653898378 LTS-002 chr17 20903081 20911204 8124 * USP22 0.424 1 NA 0.837597577241818 85 0.165842674595795 1 1 0 -5.7652873841559 LTS-002 chr17 20911205 22066835 1155631 * c(MTRNR2L1, USP22, NATD1, DHRS7B, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3, TMEM11) 0.371891235823331 118 0.0650052455566231 0.898054938340608 595 0.306338559488443 2 2 0 -6.74957854996574 LTS-002 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.788 1 NA NA NA NA NA LTS-002 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.333 1 NA 0.91248829931953 17 0.224829723150131 2 2 0 -5.76442379241682 LTS-002 chr17 25630389 28088280 2457892 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-002 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.288773203338051 47 0.0750265324638092 0.91268714654733 4234 0.233248491871213 3 3 0 -7.18140785292653 LTS-002 NA NA NA NA LTS-002 chr17 28088281 28120849 32569 * SSH2 NA 0 NA 0.521 1 NA NA NA NA NA LTS-002 chr17 28120850 34433730 6312881 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-002 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.294552665516971 106 0.102706891543509 0.866278443213402 5958 0.275009063969458 2 2 0 -7.05818336935689 LTS-002 NA NA NA NA LTS-002 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.168 1 NA NA NA NA NA LTS-002 chr17 34539282 34842453 303172 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA, TBC1D3H) 0.191959226260109 2 0.216374675043084 0.454890504318084 44 0.532078732411044 3 3 0 -7.33459474780873 LTS-002 chr17 34842454 34842513 60 * ZNHIT3 NA 0 NA 0.829 1 NA NA NA NA NA LTS-002 chr17 34842514 36234012 1391499 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.287115480384441 31 0.124497976837213 0.858305258118759 1556 0.38406626373587 3 3 0 -6.94863837271941 LTS-002 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.454 1 NA NA NA NA NA LTS-002 chr17 36351756 36398345 46590 * LOC440434 0.275848735243409 3 0.166500250250062 0.492751299985739 64 0.480172748913975 4 4 0 -6.82107344492334 LTS-002 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.802 1 NA NA NA NA NA LTS-002 chr17 36421727 44172117 7750391 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-002 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.307534786900728 262 0.0712853771708573 0.888822558433374 15145 0.562625810715098 3 3 0 -7.03593322339797 LTS-002 NA NA NA NA LTS-002 chr17 44172118 44364336 192219 * character(0) 0.312757492810113 2 0.0240416305603426 0.502482436173659 73 0.131205061887262 3 3 0 -9.07174462651261 LTS-002 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.89 1 NA NA NA NA NA LTS-002 chr17 44408492 46154458 1745967 * c(MIR5089, CBX1, OSBPL7, EFCAB13, MRPL10, TBX21, ITGB3, KPNB1, RPRML, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.342398045035848 48 0.0856289931511816 0.866537037232427 1789 0.248546997074477 2 2 0 -6.78958883888161 LTS-002 chr17 46154459 46189319 34861 * c(CBX1, SNX11) NA 0 NA 0.618 1 NA NA NA NA NA LTS-002 chr17 46189320 46806532 617213 * c(MIR1203, MIR3185, HOXB-AS1, HOXB13, SNX11, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, HOXB-AS3, MIR10A, MIR196A1, PRAC1, SKAP1) 0.33158892071347 17 0.0574805593734295 0.757087037712468 750 0.262634414550839 2 2 0 -7.04892663264292 LTS-002 chr17 46806533 46840162 33630 * TTLL6 NA 0 NA 0.881 1 NA NA NA NA NA LTS-002 chr17 46840163 80363378 33523216 * c(SNORA38B, LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, TOM1L1, MIR4316, MIR3065, MIR3186, LINC00674, LINC00673, MIR3614, MIR3678, MIR3615, C17orf112, TSPOAP1-AS1, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4729, MIR4737, MIR4736, MIR4738, MIR4740, MIR4524A, MIR4730, MIR3064, MIR5047, CEP295NL, MIR4524B, LOC100996291, DNAH17-AS1, TOB1, CDK3, ALYREF, SLC35B1, NA NA NA NA NA NA NA NA NA LTS-002 DCAF7, CALCOCO2, ABCA10, ABCA9, ABCA8, BAIAP2, ATP5H, APPBP2, ST6GALNAC2, IGF2BP1, GNA13, SEPT9, CD300C, CHAD, TLK2, KAT7, POLG2, NXPH3, SNF8, CD300A, TMC6, DDX42, CYGB, RNF157, C1QTNF1, PPP1R27, FTSJ3, CLTC, METTL23, HSF5, OR4D2, MSI2, SLC38A10, CANT1, USH1G, CD300LB, KIF19, C17orf64, WFIKKN2, FLJ40194, B4GALNT2, TBC1D16, AFMID, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, CSNK1D, MGAT5B, TEPSIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RBFOX3, CD300LF, C17orf77, TCAM1P, EFCAB3, SLC25A10, LOC146880, EME1, NOTUM, TMC8, AANAT, CYB561, ANKFN1, MARCH10, TMEM92, PHOSPHO1, ACE, DDX5, DLX3, DLX4, CEP112, SAMD14, CENPX, LRRC45, SLC39A11, AMZ2P1, TRIM65, UNC13D, ERN1, EVPL, BPTF, FASN, FDXR, ZNF652, PPM1E, ARSG, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, MMD, WBP2, CDC42EP4, MTVR2, STXBP4, CACNA1G-AS1, GAA, TAC4, MYADML2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NPB, FSCN2, GALK1, NOL11, TANC2, NAT9, PITPNC1, GCGR, OR4D1, GH1, GH2, GIP, CACNG5, CACNG4, GNGT2, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, C17orf58, MILR1, TTLL6, LOC284080, C17orf47, SLC26A11, ENDOV, GDPD1, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, HLF, RAB37, BIRC5, ICAM2, METTL2A, C17orf67, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 NACA2, OTOP3, SKA2, MCRIP1, APOH, GPR142, ZACN, ITGA3, ITGB4, HILS1, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, TOB1-AS1, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAFG, MAP3K3, MPO, MXRA7, TBC1D3P2, PLEKHM1P1, LOC440461, BAIAP2-AS1, MIR338, TRIM37, NGFR, NME1, NME2, NPTX1, P4HB, ACOX1, MRPS7, UTP18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RNFT1, HN1, TUBD1, DCXR, TACO1, ABI3, MRPL27, AMZ2, PDE6G, ANAPC11, SIRT7, ATP5G1, PDK2, MRPS23, PTRH2, LUC7L3, PECAM1, PHB, SEPT4, SDK2, FAM20A, MBTD1, BCAS3, TMEM104, RNF43, MKS1, LINC00483, C17orf80, CCDC40, EPN3, WIPI1, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, NPLOC4, PRKAR1A, PRR11, PRKCA, ST6GALNAC1, TEX2, GPRC5C, MAP2K6, TEX14, PRPSAP1, CA10, CCDC47, PSMC5, PSMD12, CBX8, MIF4GD, INTS2, CASKIN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, PCTP, RAC3, RAD51C, SCPEP1, RFNG, SLC25A19, RPL38, MRPL12, RPS6KB1, SCN4A, UBE2O, HEATR6, SEC14L1, SECTM1, DUS1L, XYLT2, SRSF1, SRSF2, CPSF4L, SMIM5, SGCA, DNAI2, SGSH, WFDC21P, SMURF2, ENGASE, SPATA20, MRPL38, UBE2Z, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SNHG20, SMARCD2, SUMO2, SOX9, SRP68, SSTR2, SCARNA20, SCARNA16, SNORA50C, SNORD1A, SNORD1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SNORD1C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, MIR636, TIMP2, TK1, ACTG1, MIR657, FLJ45513, LOC729683, CA4, PRCD, MIR454, TRIM25, VEZF1, CACNG1, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, DHX40, OGFOD3, NUP85, MYO15B, ACSF2, FAAP100, LIMD2, KCNH6, FAM117A, COIL, AKAP1, VMP1, EPX, AXIN2, TSPAN10, BRIP1, SPOP, MYCBPAP, QRICH2, KIF2B, USP32, PPP1R9B, CBX2, FAM104A, PPM1D, MGC16275, DGKE, FBF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CBX4, UNK, DNAH17, ABCC3, RGS9, GALR2, SPHK1, CACNA1G, SOCS3, SPAG9, CEP95, MTMR4, TRIM47, SLC16A6, SLC16A5, SLC16A3, ANKRD40, SYNGR2, HGS, STRADA, PRR29, CD7, NOG, TSPOAP1, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, TBX4, AATK, CD79B, TMEM94, EIF4A3, MRC2, HELZ, MED13) 0.303680281219159 684 0.0729293882090877 0.882476456565155 29603 0.247024046289888 2 2 0 -7.24604638840792 LTS-002 NA NA NA NA LTS-002 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.903 1 NA NA NA NA NA LTS-002 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.279691508609181 3 0.0192959408512084 1.79636884354297 39 0.838136742858881 15 12 3 -6.73516801911301 LTS-002 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.84 1 NA NA NA NA NA LTS-002 chr17 80391535 81043175 651641 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.314371455975901 31 0.0422695650442758 0.870181967885684 875 0.254512157238928 3 3 0 -6.90328841327254 LTS-002 chr17 81043176 81083625 40450 * METRNL NA 0 NA 0.995669908646432 21 0.221967243400591 3 NA NA -5.76480784307556 LTS-002 chr18 116845 121139 4295 * ROCK1P1 0.335 1 NA 0.697900180010336 25 0.314756652034552 0 0 0 -5.76449637753903 LTS-002 chr18 121140 3580552 3459413 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.457405586301281 46 0.0481353014572134 0.744568383657649 1833 0.216230009428758 1 1 0 -7.51988292079858 LTS-002 chr18 3580553 3580565 13 * DLGAP1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-002 chr18 3580566 8546022 4965457 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.422943829060569 48 0.111733123021519 0.874854883833876 1438 0.25077973147586 2 1 1 -6.7806979157841 LTS-002 chr18 8546023 14866503 6320481 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.426415197506384 94 0.101369276180128 0.799316746602548 3356 1.11767227579585 1 1 0 -6.76732005590321 LTS-002 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.00023972824199 33 0.612285631936401 3 NA NA -5.76453715582264 LTS-002 chr18 18529727 18529880 154 * ROCK1 0.245 1 NA 0.982140147467803 3 0.914038474755485 3 3 0 -5.76441032937693 LTS-002 chr18 18529881 55862847 37332967 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, LINC-ROR, ACAA2, ZNF271P, MAPRE2, POLI, ESCO1, OSBPL1A, HAUS1, LOXHD1, INO80C, TTC39C, PSMA8, STARD6, C18orf25, SLC25A52, DSG4, AQP4-AS1, ANKRD29, C18orf54, TCEB3C, DCC, NA NA NA NA NA NA NA NA NA LTS-002 ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, FECH, TRAPPC8, NEDD4L, WDR7, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, CABYR, GATA6, SNORD58B, SNORD58A, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ST8SIA5, C18orf8, CXXC1, AQP4, CCDC178, LAMA3, MIR1-2, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, NARS, NPC1, RNF165, C18orf32, ATP5A1, ST8SIA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ELP2, IMPACT, ELAC1, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, EPG5, RAB27B, RBBP8, HRH4, RIT2, ROCK1, RPL17, KC6, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SNRPD1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, GREB1L, FHOD3, CCDC68, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TMEM241, NOL4, RIOK3, MBD2, PSTPIP2, PIAS2, CABLES1, B4GALT6, TXNL1, LIPG, ONECUT2, CTIF) 0.433782315135477 250 0.0974725210170213 0.812463058115514 13728 0.306080755875729 1 1 0 -7.15166597412512 LTS-002 NA NA NA NA LTS-002 chr18 55862848 56246442 383595 * c(MIR3591, ALPK2, NEDD4L, MIR122) 0.12 1 NA 0.827868807443351 305 0.20176342364247 1 1 0 -5.78381628033979 LTS-002 chr18 56246443 58283329 2036887 * c(MALT1, ALPK2, CCBE1, GRP, RAX, CPLX4, OACYLP, LMAN1, MC4R, PMAIP1, ZNF532, SEC11C) 0.361385469624329 23 0.170452606049573 0.788240284247333 796 0.272479122266362 1 1 0 -6.76963566799994 LTS-002 chr18 58283330 58291479 8150 * character(0) 0.463 1 NA 0.804290651320465 28 0.372002382367066 1 1 0 -5.76444148471879 LTS-002 chr18 58291480 63549023 5257544 * c(CDH7, LINC01544, RNF152, LINC00305, PHLPP1, PIGN, KDSR, CDH20, HMSD, LOC284294, LINC01538, SERPINB2, SERPINB5, SERPINB8, SERPINB10, SERPINB13, ZCCHC2, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, VPS4B) 0.457937729096724 50 0.0363256304635092 0.795805472636488 2117 0.784610223854507 2 1 1 -7.5109857942299 LTS-002 chr18 63549024 65176856 1627833 * c(MIR5011, CDH19, DSEL) 0.342730411777294 9 0.198459133772618 1.02865273708592 287 1.17173773962011 3 3 0 -6.74036856254892 LTS-002 chr18 65176857 67687860 2511004 * c(CD226, DOK6, RTTN, TMX3, LOC643542, CCDC102B, DSEL) 0.470200960859954 8 0.0252611361581382 0.808740155520578 462 0.200831293057435 2 1 1 -9.09065097814306 LTS-002 chr18 67687861 67697368 9508 * RTTN 0 1 NA 0.850456242584664 23 0.536854791534616 2 2 0 -5.76448002626344 LTS-002 chr18 67697369 71987826 4290458 * c(LINC01541, LOC100505817, CBLN2, CYB5A, FBXO15, RTTN, TIMM21, LOC400655, C18orf63, NETO1, SOCS6) 0.173268465803752 11 0.228783859888443 0.802532042098911 625 0.339058578540717 1 1 0 -7.29992967205115 LTS-002 chr18 71987827 71990033 2207 * C18orf63 0.365 1 NA 0.956375851021572 5 0.29619537471068 2 2 0 -5.76446080312502 LTS-002 chr18 71990034 77917479 5927446 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, PARD6G, CNDP1, CTDP1, ZNF516) 0.45052527721962 52 0.0412678180357269 0.795057330457654 2284 0.210178701192013 1 1 0 -7.47289736071349 LTS-002 chr18 77917480 78005362 87883 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.680450920926246 54 0.171029227051811 0 NA NA -5.76628647710577 LTS-002 chr19 107416 282795 175380 * c(LINC01002, OR4F17, PLPP2) 0.379 1 NA 0.988255408969122 17 0.385253249404169 3 3 0 -5.76532324036889 LTS-002 chr19 282796 4247005 3964210 * c(C19orf71, MED16, LOC100288123, MIR1909, MIR1227, MIR3187, MIR4321, MIR4745, EBI3, FSTL3, APC2, ABCA7, HMG20B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, SBNO2, ZFR2, PIP5K1C, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, NA NA NA NA NA NA NA NA NA LTS-002 GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, ODF3L2, MKNK2, GPX4, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MATK, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, BTBD2, RNF126, MAP2K2, PRTN3, AZU1, NCLN, SPPL2B, PTBP1, WDR18, REXO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZNF77, CACTIN, CELF5, HCN2, RPS15, SGTA, LINGO3, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, TLE6, PLPPR3, ZNF556, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, CREB3L3, LMNB2, RAX2, MUM1, ATCAY, PLPP2, S1PR4, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, APBA3, CDC34) 0.42434244283365 269 0.0548717295385041 0.852023741972643 7775 0.246418339416642 2 1 1 -6.87282992674911 LTS-002 NA NA NA NA LTS-002 chr19 4247006 4250991 3986 * CCDC94 0.32 1 NA 0.758753510606663 9 0.127088551805424 1 1 0 -5.76453034013393 LTS-002 chr19 4250992 4501338 250347 * c(CHAF1A, MIR4746, TMIGD2, STAP2, CCDC94, SHD, SH3GL1, FSD1, UBXN6, HDGFRP2, MPND) 0.377054355433729 24 0.10450351044655 0.849383190655379 547 0.319195085753237 2 2 0 -6.75233636573105 LTS-002 chr19 4501339 4501962 624 * HDGFRP2 NA 0 NA 1.217 1 NA NA NA NA NA LTS-002 chr19 4501963 8601955 4099993 * c(LOC100128568, LOC100128573, DPP9-AS1, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4999, PLIN3, CLEC4M, TUBB4A, TIMM44, SEMA6B, PNPLA6, EVI5L, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TNFAIP8L1, NDUFA11, ZNF358, TICAM1, ZNRF4, PRR22, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ARHGEF18, FUT3, FUT5, FUT6, KANK3, TINCR, CATSPERD, RPL36, MIR7-3HG, SLC25A41, MBD3L5, UHRF1, GTF2F1, CD209, ADGRE4P, NA NA NA NA NA NA NA NA NA LTS-002 CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, VMAC, CTXN1, MIR7-3, MLLT1, PLIN5, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, NRTN, FLJ25758, ANGPTL4, MARCH2, CD320, FEM1A, MYDGF, MAP2K7, PSPN, RETN, GPR108, DUS3L, XAB2, MCOLN1, CAMSAP3, PTPRS, RFX2, RPS28, SAFB, CCL25, ARRDC5, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, PLIN4, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, ACSBG2, CLPP, CAPS, PRAM1, ALKBH7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZNF414, FBN3, HDGFRP2, RANBP3, KHSRP, TNFSF14, TNFSF9, DPP9, RAB11B, CRB3, PEX11G, TRIP10, LONP1, SAFB2, CD70) 0.410389932388263 139 0.0796577884278764 0.892386033249822 6243 0.312596849706274 2 1 1 -6.73961996818434 LTS-002 NA NA NA NA LTS-002 chr19 8601956 8604829 2874 * MYO1F NA 0 NA 1.028 1 NA NA NA NA NA LTS-002 chr19 8604830 9408033 803204 * c(OR7D4, OR7G1, OR1M1, ZNF558, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF699, OR7G2, OR7G3, MYO1F, ZNF317, ADAMTS10, MBD3L1, MUC16) 0.377094802985206 43 0.105153365820121 0.972873122169589 1688 0.26722045399133 2 2 0 -6.7845901018051 LTS-002 chr19 9408034 19770774 10362741 * c(SNORD105B, ZGLP1, TMEM221, MEF2B, MIR1470, MIR1181, MIR1238, MIR3188, MIR4322, MIR3189, LOC100507373, ZNF559-ZNF177, ZNF625-ZNF20, AP1M2, MIR4748, SUGP2, DDX39A, ZNF443, AKAP8, CDKN2D, B3GNT3, KLF2, IFI30, CARM1, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ZNF266, ILVBL, TMED1, CDC37, FDX1L, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CCDC151, ZNF653, CIB3, RLN3, RAVER1, CALR3, ZNF441, ZNF491, ZNF440, NA NA NA NA NA NA NA NA NA LTS-002 SWSAP1, CCDC159, LRRC25, OR1I1, NR2C2AP, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, ILF3-AS1, ZNF560, ZNF563, SPC24, CILP2, LINC00905, ZNF846, ZNF791, ZNF564, ZNF709, ZNF433, SSBP4, DHPS, DNASE2, DNM2, DNMT1, ELAVL3, ZNF627, DAND5, FAM129C, EPOR, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, C19orf38, SYCE2, TMEM59L, PGLS, LSM4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, ZNF561-AS1, ZNF763, ZNF844, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, ICAM1, ICAM3, ICAM4, NANOS3, PALM3, IL12RB1, ILF3, INSL3, JAK3, JUNB, JUND, ZNF699, TMEM205, YJEFN3, SLC27A1, KCNN1, C3P1, ZNF788, CLEC17A, CYP4F24P, OR7A10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 LDLR, ZNF833P, HAPLN4, CYP4F3, LYL1, MIR181C, MIR199A1, MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, P2RY11, COL5A3, RDH8, MRPL4, NDUFA13, GMIP, ECSIT, WDR83OS, PDE4A, PDE4C, ISYNA1, ZNF44, PIK3R2, PIN1, TM6SF2, S1PR5, ACP5, DDX49, ZNF562, GATAD2A, BEST2, FBXL12, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, C19orf66, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, USE1, PRKCSH, ANGPTL8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PPAN, ATP13A1, RGL3, SLC44A2, PTGER1, MIR181D, ZNF490, DOCK6, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UBL5, UPF1, RFX1, RPL18A, C19orf67, PLPPR2, RASAL3, MRPL34, KRI1, SLC1A6, ZSWIM4, SLC5A5, UCA1, SMARCA4, CYP4F12, BST2, SNORD105, PPAN-P2RY11, MIR638, MIR639, PRDX2, ICAM5, TPM4, ZNF812P, TYK2, ZNF878, LOC729966, BORCS8, UBA52, ZNF20, ZNF69, ZNF121, ZNF136, CACNA1A, ZNF177, YIPF2, C19orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 DDA1, KXD1, TMEM38A, SMIM7, ZNF426, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, ZNF442, PBX4, KIAA1683, CALR, CCDC130, ELL, QTRT1, PLVAP, RTBDN, ANGPTL6, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ELOF1, ZNF333, ZNF559, ADGRE3, GTPBP3, MPV17L2, HSH2D, ATG4D, CYP4F2, SYDE1, RFXANK, EIF3G, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, LPAR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CRLF1, S1PR2, ZNF561, OLFM2, HAUS8, MVB12A, ARMC6, MED26, HOMER3, IL27RA, GDF15, TECR, RAB3D, IER2, ADGRE5, KEAP1) 0.415596776165579 347 0.08407967450167 0.89150362922915 18691 0.260076266893823 2 1 1 -6.74693078658826 LTS-002 NA NA NA NA LTS-002 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.663 1 NA NA NA NA NA LTS-002 chr19 19772755 23927345 4154591 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.421651155014463 28 0.0492523466526586 0.809419674147501 1401 0.354919041537196 1 1 0 -6.84611946454254 LTS-002 chr19 23927346 24345121 417776 * c(HAVCR1P1, ZNF681, RPSAP58, ZNF726, ZNF254) NA 0 NA 0.892939093888677 159 0.255764397670347 2 NA NA -5.764847203736 LTS-002 chr19 28247625 29704002 1456378 * c(LINC01532, LINC00906, LINC00662, UQCRFS1) 0.5 1 NA 1.15579317469415 23 0.288991643409415 4 4 0 -5.76513545494695 LTS-002 chr19 29704003 36501445 6797443 * c(HPN-AS1, LINC01531, SCGB2B3P, TMEM147-AS1, THEG5, UBA2, LINC00904, MIR5196, UPK1A-AS1, TMEM147, CEBPA, CEBPG, POP4, HCST, UPK1A, SLC7A9, ARHGAP33, WDR88, WTIP, ZNF792, HSPB6, COX6B1, DPY19L3, ZNF599, FAM187B, PROSER3, LGI4, SYNE4, U2AF1L4, ETV2, ZNF507, HAUS5, LSM14A, GAPDHS, ZBTB32, GPI, LOC284395, SCGB2B2, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF181, VSTM2B, SBSN, RGS9BP, KRTDAP, NUDT19, LOC400684, NA NA NA NA NA NA NA NA NA LTS-002 LOC400685, LRP3, MAG, NPHS1, ATP4A, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, PSENEN, ZNF302, LIN37, SLC7A10, TSHZ3, GRAMD1A, HAMP, PRODH2, SCN1B, SCGB1B2P, CHST8, SDHAF1, TYROBP, UQCRFS1, USF2, KCTD15, PLEKHF1, RBM42, LRFN3, IGFLR1, CEBPA-AS1, C19orf12, KIRREL2, ANKRD27, PDCD2L, NFKBID, CEP89, ALKBH6, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, DMKN, CD22, NA, KIAA0355, ZNF536, KMT2B NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ) 0.329922328387222 128 0.0733181365767207 1.13238843437501 5368 0.331921087441167 4 4 0 -6.93428262588159 LTS-002 NA NA NA NA LTS-002 chr19 36501446 36501472 27 * ALKBH6 NA 0 NA 1.385 1 NA NA NA NA NA LTS-002 chr19 36501473 36674305 172833 * c(TBCB, COX7A1, ZNF565, THAP8, CLIP3, WDR62, POLR2I, OVOL3, CAPNS1, ALKBH6) 0.339211910532898 5 0.0615995129850878 1.23579720565823 499 0.280928280117596 5 4 1 -6.76380788981781 LTS-002 chr19 36674306 36937243 262938 * c(LOC100134317, LINC00665, ZNF565, ZFP82, ZFP14, LOC644189, ZNF146, ZNF566) 0 1 NA 1.14555083461338 166 0.272695642360748 4 4 0 -5.76441083537689 LTS-002 chr19 36937244 37316667 379424 * c(ZNF567, ZNF790-AS1, ZNF260, ZNF850, ZNF790, ZNF529, LOC728752, ZNF382, ZNF566, ZNF461) 0.295305043559608 2 0.0381837661840736 1.2406414826347 574 0.271766397186743 4 4 0 -6.77824903092906 LTS-002 chr19 37316668 37367627 50960 * c(ZNF345, ZNF790-AS1, ZNF790) NA 0 NA 1.979 1 NA NA NA NA NA LTS-002 chr19 37367628 39087120 1719493 * c(ZNF571-AS1, LOC100631378, SPINT2, MAP4K1, RASGRP4, ZNF573, ZNF420, FAM98C, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZNF585A, GGN, ZFP30, SIPA1L3, ZNF345, LOC284412, HKR1, ZNF829, ZNF568, ZNF793, SPRED3, ZNF571, PSMD8, CATSPERG, RYR1, C19orf33, LOC644554, DPF1, WDR87, ZNF527, ZNF607, YIF1B, ZNF585B, KCNK6, PPP1R14A) 0.195141546606703 36 0.0578085510234305 2.09605399009425 2776 0.494964201617901 13 12 1 -6.75945492356774 LTS-002 chr19 39087121 39087645 525 * MAP4K1 NA 0 NA 2.242 1 NA NA NA NA NA LTS-002 chr19 39087646 39230748 143103 * c(MAP4K1, CAPN12, EIF3K, ACTN4) 0.16600662019831 18 0.0473413414932349 2.414005739416 372 0.710325968284297 17 16 1 -6.73565810452234 LTS-002 chr19 39230749 39297190 66442 * c(CAPN12, LGALS4, LGALS7, LGALS7B) 0 1 NA 2.36743430297889 59 1.77923801058349 14 14 0 -5.76441015245605 LTS-002 chr19 39297191 41447429 2150239 * c(LOC100129935, MIA-RAB4B, RAB4B-EGLN2, MIR4530, IFNL4, PAK4, DLL3, EGLN2, FBXO17, CLC, EID2B, RINL, FBXO27, C19orf47, HIPK4, LGALS16, TTC9B, CYP2A6, CYP2A7, CYP2B7P, EID2, ZNF780B, ECH1, AKT2, FBL, SIRT2, CYP2G1P, PLD3, IFNL2, IFNL3, IFNL1, ZNF780A, C19orf54, LGALS13, SERTAD3, SERTAD1, HNRNPL, ZNF546, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS17A, MAP3K10, NFKBIB, RAB4B, PAF1, SARS2, SAMD4B, NA NA NA NA NA NA NA NA NA LTS-002 MED29, LGALS14, PSMC4, LRFN1, PRX, SPTBN4, MRPS12, RPS16, CCER2, BLVRB, PLEKHG2, SNRPA, SUPT5H, MIR641, ZFP36, COQ8B, CNTD2, ITPKC, MIA, LTBP4, FCGBP, DYRK1B, NUMBL, TIMM50, SHKBP1, GMFG) 0.140919458734888 93 0.0491982161198779 2.48435187906679 4207 0.733508332815436 14 14 0 -6.73931671738412 LTS-002 NA NA NA NA LTS-002 chr19 41447430 41447868 439 * c(CYP2A7, CYP2B7P) NA 0 NA 3.314 1 NA NA NA NA NA LTS-002 chr19 41447869 41759474 311606 * c(CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2S1, AXL) 0.108679246313657 8 0.0669578758837013 3.75519286585856 316 1.26963149143782 20 20 0 -6.73788988376784 LTS-002 chr19 41759475 41771345 11871 * c(HNRNPUL1, AXL) NA 0 NA 3.93165561881849 35 1.1691337761585 20 NA NA -5.76470788667353 LTS-002 chr19 41771346 41774049 2704 * HNRNPUL1 NA 0 NA 0.73 1 NA NA NA NA NA LTS-002 chr19 41774050 41889748 115699 * c(HNRNPUL1, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.486 1 NA 0.771896086735967 187 0.182228290312238 1 1 0 -5.76467814255792 LTS-002 chr19 41889749 52148831 10259083 * c(SIGLEC14, SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LIPE-AS1, LOC101059948, NA NA NA NA NA NA NA NA NA LTS-002 TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, KLK11, CLASRP, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CLDND2, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, CRX, VSIG10L, C19orf84, PPM1N, KLC3, IGSF23, LYPD4, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, DEDD2, ZNF114, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SPACA4, DMPK, DMWD, MEGF8, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, ETFB, FCGRT, ATF5, CARD8, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, SIGLEC7, LYPD3, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, GPR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, KCNA7, KCNC3, B3GNT8, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIM2, LIPE, SIGLEC16, LOC400710, IGLON5, BCAM, MIR150, KLK14, KLK12, PSG8, MIR330, IGFL4, MYBPC2, CEACAM6, ATP1A3, NKG7, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, POLD1, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, SMG9, IRGC, CABP5, PRRG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KLK7, KLK6, KLK10, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RPS19, RRAS, RTN2, CLEC11A, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF175, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 CNFN, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, SIGLEC10, SIGLEC12, PGLYRP1, CEACAM21, EXOC3L2, CTU1, ARHGEF1, CYTH2, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34, CD79A) 0.439351364172878 427 0.0815338386958507 0.783431382718969 18052 0.286485461351007 1 1 0 -6.85267490701537 LTS-002 NA NA NA NA LTS-002 chr19 52148832 52149043 212 * SIGLEC14 NA 0 NA 1.371 1 NA NA NA NA NA LTS-002 chr19 52149044 53995750 1846707 * c(SIGLEC14, ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, MIRLET7E, MIR125A, MIR99B, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, NA NA NA NA NA NA NA NA NA LTS-002 ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, ZNF845, ZNF432) 0.451865677428149 42 0.0375078543845721 0.836292490091039 2430 0.211486347962974 2 1 1 -7.36795055455258 LTS-002 NA NA NA NA LTS-002 chr19 53995751 54075063 79313 * c(ZNF813, ZNF331) NA 0 NA 0.895254176827742 77 0.242226918489691 2 NA NA -5.76446322892057 LTS-002 chr19 54075064 54079944 4881 * ZNF331 NA 0 NA 0.651 1 NA NA NA NA NA LTS-002 chr19 54079945 54082333 2389 * ZNF331 0 1 NA 0.699770992375713 39 0.200210661658752 0 0 0 -5.76453995259308 LTS-002 chr19 54082334 54486773 404440 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LOC284379, MIR372, MIR373, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, NA NA NA NA NA NA NA NA NA LTS-002 MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, NLRP12, MYADM) 0.320265333571019 9 0.228898145713571 0.7636767311691 599 0.279292380452288 1 1 0 -6.8114051871789 LTS-002 NA NA NA NA LTS-002 chr19 54486774 54486811 38 * CACNG8 0.457 1 NA 1.651 1 NA NA NA NA NA LTS-002 chr19 54486812 54799990 313179 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, CACNG8, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.43457152300195 48 0.0716507363129256 0.788789076290548 1147 0.235583054908065 2 1 1 -6.83231947113222 LTS-002 chr19 54799991 54800103 113 * c(LILRA3, LILRA6) NA 0 NA 0.802 1 NA NA NA NA NA LTS-002 chr19 54800104 54804771 4668 * c(LILRA3, LILRA6) NA 0 NA 0.354757046315614 39 0.116160540869353 0 NA NA -5.8429040473718 LTS-002 chr19 54804772 54818321 13550 * character(0) NA 0 NA 0.837 1 NA NA NA NA NA LTS-002 chr19 54818322 55328899 510578 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.437323639496084 69 0.0907754952456025 0.778239897090229 1027 0.360712875414164 2 1 1 -6.81608140945964 LTS-002 chr19 55328900 55328993 94 * c(KIR2DS4, KIR3DL1) 0.387 1 NA 1.747 1 NA NA NA NA NA LTS-002 chr19 55328994 55351171 22178 * c(KIR2DS4, KIR3DL1) 0.478151819135273 6 0.0381038055842195 1.24268888217172 57 0.504178707575927 4 2 2 -8.00097651052031 LTS-002 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.29 1 NA NA NA NA NA LTS-002 chr19 55358616 56172425 813810 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628, NCR1) 0.45341945676448 62 0.0682883735099665 0.769167788660697 2276 0.261546807313422 1 1 0 -7.04832157480569 LTS-002 chr19 56172426 59074653 2902228 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, U2AF2, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, EPN1, NLRP9, NA NA NA NA NA NA NA NA NA LTS-002 RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.439289010557866 178 0.0631463234614527 0.821959130476054 5086 0.414638952338661 2 1 1 -6.89833747014222 LTS-002 NA NA NA NA LTS-002 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.795050683241924 37 0.14291802917429 1 NA NA -5.76450141064421 LTS-002 chr20 68260 76962 8703 * DEFB125 0.466 1 NA 1.46484099231005 11 0.46435074909148 7 7 0 -5.76443417660385 LTS-002 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.391591064469638 54 0.093742016664513 1.20867182723199 1943 0.372893643621421 4 3 1 -6.75431089102787 LTS-002 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.067 1 NA NA NA NA NA LTS-002 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0585485477887441 39 0.0204210074153958 0 NA NA -18.3493945980492 LTS-002 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.223 1 NA NA NA NA NA LTS-002 chr20 1600391 25282967 23682577 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, CST1, CST2, CST3, NA NA NA NA NA NA NA NA NA LTS-002 CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, SNX5, GNRH2, LOC284788, LOC284798, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, TGM3, THBD, LINC01433, ZNF133, NDUFAF5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, CDC25B, SLC23A2) 0.396209433048583 254 0.0840694540475677 1.24400197411123 12021 0.43062297373761 5 3 2 -6.7873865287955 LTS-002 NA NA NA NA LTS-002 chr20 25282968 25428750 145783 * c(ABHD12, GINS1) 0 1 NA 1.24171769443672 129 0.287278542319015 5 5 0 -5.76487683192031 LTS-002 chr20 25428751 25752664 323914 * c(NANP, NINL, ZNF337, FAM182B, GINS1) 0.272807934633132 9 0.179589423717298 1.26181892474439 355 0.404970590634757 5 5 0 -6.73613266077101 LTS-002 chr20 25752665 25752672 8 * FAM182B NA 0 NA 0.982 1 NA NA NA NA NA LTS-002 chr20 25752673 26188981 436309 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.282117684174035 21 0.150174200434663 1.01093660011498 83 0.684978606562805 4 4 0 -6.74254312763637 LTS-002 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.593 1 NA NA NA NA NA LTS-002 chr20 29625845 29625852 8 * FRG1BP 0.152 1 NA 1.804 1 NA NA NA NA NA LTS-002 chr20 29625853 33879731 4253879 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, MLLT10P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, FRG1BP, NA NA NA NA NA NA NA NA NA LTS-002 C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.343062238498792 89 0.108578475030923 1.22678276699967 5557 0.355534696795328 5 4 1 -6.76007240467566 LTS-002 NA NA NA NA LTS-002 chr20 33879732 35807940 1928209 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, FAM83C, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.379282128210344 33 0.10685693848801 1.13891633767063 3114 0.321737155924175 4 3 1 -6.73497619040366 LTS-002 chr20 35807941 35812512 4572 * c(MROH8, RPN2) NA 0 NA 1.26 1 NA NA NA NA NA LTS-002 chr20 35812513 44354387 8541875 * c(ADA, LOC100287792, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, LINC00489, SGK2, WFDC2, SPINT3, BLCAP, TOMM34, SERINC3, PTPRT, PKIG, RBPJL, VSTM2L, SNHG11, FITM2, WFDC12, SLC32A1, RIMS4, WFDC10A, WFDC6, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, ZHX3, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, GHRH, TP53TG5, WFDC10B, HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MYBL2, NNAT, IFT52, OSER1, NA NA NA NA NA NA NA NA NA LTS-002 PIGT, PI3, PLCG1, DBNDD2, CTNNBL1, EPPIN, RALGAPB, JPH2, RPRD1B, KCNK15, DHX35, RPN2, SDC4, MANBAL, SEMG1, SEMG2, SRSF6, LPIN3, SLPI, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, FAM83D, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, TTI1, MAFB) 0.374973480454723 140 0.106355852054257 1.2248172532123 6591 0.365795525340709 5 4 1 -6.80427506904304 LTS-002 NA NA NA NA LTS-002 chr20 44354388 44378577 24190 * character(0) 0.452 1 NA 1.29531962698547 7 0.142614532085285 5 5 0 -5.76473315469668 LTS-002 chr20 44378578 62872259 18493682 * c(ACOT8, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, MIR3616, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, TRERNA1, ARFRP1, OGFR-AS1, RGS19, SYCP2, CEBPB, ARFGEF2, TCFL5, ADRM1, OGFR, UBE2C, DIDO1, HRH3, NA NA NA NA NA NA NA NA NA LTS-002 TP53RK, CHRNA4, DNTTIP1, FAM210B, PHACTR3, BHLHE23, NKAIN4, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, WFDC3, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, NEURL2, ZSWIM3, FAM65C, RBBP8NL, CSE1L, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SNORD12C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 MOCS3, GNAS, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, KCNQ2, TMEM189, TMEM189-UBE2V1, FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ZFAS1, MYT1, NFATC2, NTSR1, OPRL1, STMN3, SLC35C2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZFP64, ARFGAP1, DOK5, RNF114, SULF2, SLC2A4RG, PSMA7, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, PTPN1, NCOA5, CDH26, RPS21, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, CDH22, SLC13A3, BMP7, SNAI1, SRMS, STAU1, AURKA, TAF4, TCEA2, SNORD12, MIR645, MIR647, TFAP2C, TNNC2, TPD52L2, UBE2V1, HAR1A, HAR1B, MKRN7P, ZNF217, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 TUBB1, ZBP1, SLC2A10, CABLES2, NCOA3, PARD6B, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, DPM1, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, SPATA2, OSBPL2) 0.402860195794286 404 0.0714621698902688 1.19437005355924 15927 0.334140525791044 4 2 2 -6.91819592560412 LTS-002 NA NA NA NA LTS-002 chr20 62872260 62959313 87054 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.17545706934949 121 0.558926307501831 4 NA NA -5.76451628158025 LTS-002 chr21 9825764 9825838 75 * MIR3648-1 0.278 1 NA 0.326 1 NA NA NA NA NA LTS-002 chr21 9825839 11098728 1272890 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.309822724646743 35 0.109466751792036 0.884984885421545 180 0.651162085011042 3 3 0 -6.77732927586531 LTS-002 chr21 11098729 11098768 40 * c(BAGE, BAGE3) NA 0 NA 1.08128366544874 3 0.0565803263805834 3 NA NA -5.76443150649393 LTS-002 chr21 14745307 15481234 735928 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, NA) 0.31 1 NA 0.86068823273223 77 0.429549626245985 2 2 0 -5.76979706064204 LTS-002 chr21 15481235 45152383 29671149 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, RNU6-67P, BRWD1-AS1, SAMSN1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, USP16, CCT8, WDR4, BTG3, HSF2BP, ADAMTS5, LINC00310, LINC00313, B3GALT5-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, NA NA NA NA NA NA NA NA NA LTS-002 CHODL, CRYAA, LIPI, ABCC13, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, LINC00323, LINC00319, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, LINC00114, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, ATP5J, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, RBM11, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, PRDM15, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 HSPA13, TFF1, TFF2, TFF3, TIAM1, TMPRSS2, TTC3, KRTAP19-8, LINC01548, U2AF1, WRB, TMEM50B, MIR802, RUNX1-IT1, NRIP1, CHAF1B, DSCR8, URB1-AS1, PDXK, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.367595828007291 362 0.0816958943763758 0.999040481973839 14265 0.67498801108217 3 2 1 -6.92010208184854 LTS-002 NA NA NA NA LTS-002 chr21 45152384 45175571 23188 * PDXK 0.384 1 NA 0.895240564369849 88 0.314755879762952 2 2 0 -5.76441936215826 LTS-002 chr21 45175572 48084820 2909249 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CSTB, DIP2A, POFUT2, ICOSLG, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PCNT, PFKL, PCBP3, C21orf58, YBEY, NA NA NA NA NA NA NA NA NA LTS-002 TSPEAR, AGPAT3, PWP2, S100B, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, MCM3AP) 0.390391072941941 216 0.0700596202358884 0.984338869814868 4990 0.283201666753514 3 2 1 -6.81750289552087 LTS-002 NA NA NA NA LTS-002 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.49194525093285 5 0.115257537714459 7 NA NA -5.76441148328203 LTS-002 chr22 16157787 16157791 5 * character(0) 0.375 1 NA 0.386 1 NA NA NA NA NA LTS-002 chr22 16157792 20305193 4147402 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-002 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.439938604950701 103 0.0661604160147833 0.803646138945525 4450 0.2635145066749 1 1 0 -6.94708699692917 LTS-002 NA NA NA NA LTS-002 chr22 20305194 20305282 89 * DGCR6L NA 0 NA 0.909 1 NA NA NA NA NA LTS-002 chr22 20305283 20398710 93428 * c(TMEM191B, PI4KAP1, NA, DGCR6L) 0.449 1 NA 0.296001030412766 39 0.210814300667014 0 0 0 -6.47948682002654 LTS-002 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.912 1 NA NA NA NA NA LTS-002 chr22 20717835 22569618 1851784 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F) 0.443908297130455 42 0.104115789201137 0.794536581193384 2429 0.233622771991926 1 1 0 -6.83177335159263 LTS-002 chr22 22569619 22576001 6383 * character(0) NA 0 NA 0.524 1 NA NA NA NA NA LTS-002 chr22 22576002 22578523 2522 * character(0) NA 0 NA 0.326340832067789 40 0.245087844011186 0 NA NA -5.77681327128382 LTS-002 chr22 22578524 32586632 10008109 * c(DDTL, LOC100128531, MIR548J, MIR3200, MIR3199-2, MIR3199-1, IGLL5, MIR3653, MIR3928, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL2, RFPL1S, CHEK2, PIK3IP1, ZNF280A, SGSM1, EMID1, ADORA2A, SELENOM, ZNF280B, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, DDT, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, PRAME, SEC14L2, NA NA NA NA NA NA NA NA NA LTS-002 SEZ6L, PATZ1, PITPNB, PISD, OSBP2, AP1B1P1, TFIP11, PRR14L, TMEM211, C22orf31, GSTTP1, C22orf24, RHBDD3, POM121L1P, FBXW4P1, SEC14L3, RGL4, GGT1, GGT5, INPP5J, RSPH14, GNAZ, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, UQCR10, VPREB3, SLC35E4, IGLL1, SDC4P, LRRC75B, LOC391322, LIF, LIMK2, CHCHD10, SRRD, MIF, MMP11, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, DRICH1, MTFP1, UPB1, TUG1, CCDC157, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, BCR, BCRP3, ADORA2A-AS1, POM121L10P, LL22NC03-63E9.3, CES5AP1, SLC5A1, SMTN, GATSL3, GSTTP2, SMARCB1, SLC2A11, SNRPD3, TCN2, TOP1P2, MIR650, SEC14L6, VPREB1, XBP1, YWHAH, ZNF70, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, HPS4, GGTLC2, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, GAL3ST1, RAB36, BMS1P20, DEPDC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SFI1) 0.438829126266559 246 0.0935900922064769 0.784677840478923 10982 0.249728656514991 1 1 0 -6.82353835932552 LTS-002 NA NA NA NA LTS-002 chr22 32586633 32586854 222 * RFPL2 0.267 1 NA 0.889921368810659 5 1.34932679510932 2 2 0 -5.76441014906016 LTS-002 chr22 32586855 32756744 169890 * c(RFPL3S, RFPL3, RFPL2, SLC5A4) 0.32073203212101 12 0.188383614902242 0.842764317892156 154 0.542931329595476 3 3 0 -6.74616948117158 LTS-002 chr22 32756745 32783904 27160 * c(RFPL3S, RFPL3, LOC339666, RTCB) 0.487 1 NA 0.802900268725523 47 0.231283695947425 1 1 0 -5.76464993970836 LTS-002 chr22 32783905 38477930 5694026 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, CACNG2, IFT27, TRIOBP, CDC42EP1, ELFN2, C1QTNF6, ANKRD54, CSF2RB, TMPRSS6, GCAT, SLC16A8, RBFOX2, RASD2, SH3BP1, APOL2, BPIFC, FBXO7, TXN2, GGA1, CYTH4, CARD10, H1F0, HMOX1, TEX33, IL2RB, LGALS1, LGALS2, MB, MCM5, MFNG, MPST, MYH9, NCF4, EIF3L, RTCB, POLR2F, PDXP, PVALB, RAC2, SOX10, SSTR3, TIMP3, MIR658, MIR659, TST, NOL12, NA NA NA NA NA NA NA NA NA LTS-002 KCTD17, FOXRED2, APOL6, APOL5, APOL4, APOL3, SYN3, C22orf23, GALR3, MICALL1, APOL1, EIF3D, ISX, LARGE1, PICK1) 0.453268750812648 162 0.0381698853848845 0.782846892292526 5183 0.211123224440502 1 1 0 -7.63557384695817 LTS-002 NA NA NA NA LTS-002 chr22 38477931 38481782 3852 * c(SLC16A8, BAIAP2L2) 0 1 NA 0.695934269489234 27 0.575493072376442 0 0 0 -5.76443106060396 LTS-002 chr22 38481783 39358478 876696 * c(APOBEC3A_B, DNAL4, DDX17, KDELR3, DMC1, CSNK1E, APOBEC3A, CBX6, NPTXR, MAFF, CBY1, SUN2, TMEM184B, KCNJ4, LOC400927, TOMM22, FAM227A, BAIAP2L2, PLA2G6, GTPBP1, JOSD1) 0.336454802195747 11 0.21465977308713 0.770484707395929 1552 0.242548606229849 1 1 0 -6.7912174219765 LTS-002 chr22 39358479 39358525 47 * c(APOBEC3A_B, APOBEC3A) NA 0 NA 0.321 1 NA NA NA NA NA LTS-002 chr22 39358526 39359031 506 * c(APOBEC3A_B, APOBEC3A) 0 1 NA 0.425474584319013 5 1.02590886534818 0 0 0 -5.76446518318216 LTS-002 chr22 39359032 39388200 29169 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) NA 0 NA 0.298597060030821 42 0.103634240235209 0 NA NA -6.64283182565497 LTS-002 chr22 39388201 39414240 26040 * c(APOBEC3A_B, APOBEC3C, APOBEC3B) 0.404 1 NA 0.672368462423804 31 0.135004619594397 0 0 0 -5.76476400010997 LTS-002 chr22 39414241 42522997 3108757 * c(LOC100130899, NDUFA6-AS1, MIR1281, LOC100506472, MIR4766, TAB1, SLC25A17, TOB2, FAM83F, TNFRSF13C, APOBEC3D, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, APOBEC3H, WBP2NL, POLR3H, APOBEC3F, EP300, TNRC6B, ZC3H7B, CBX7, XRCC6, SNORD43, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, LINC00634, MIR33A, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, PDGFB, PMM1, MIEF1, SEPT3, MKL1, RANGAP1, APOBEC3G, RPL3, NA NA NA NA NA NA NA NA NA LTS-002 XPNPEP3, SREBF2, ST13, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, RBX1) 0.445061432389585 71 0.0975843709655416 0.767269828922685 5231 0.212185838020072 1 1 0 -6.85633013397823 LTS-002 NA NA NA NA LTS-002 chr22 42522998 42523373 376 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 1.054 1 NA NA NA NA NA LTS-002 chr22 42523374 42951997 428624 * c(NDUFA6-AS1, NFAM1, CYP2D7, CYP2D6, SERHL2, RRP7A, OGFRP1, TCF20, RRP7BP, SERHL) 0.377437816072848 22 0.0757713723367927 0.91668585643756 524 0.294973159408868 2 2 0 -6.76137567568124 LTS-002 chr22 42951998 42952064 67 * c(SERHL2, RRP7BP) NA 0 NA 0.607 1 NA NA NA NA NA LTS-002 chr22 42952065 51183255 8231191 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, MCAT, LOC284933, PARVB, NA NA NA NA NA NA NA NA NA LTS-002 NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.444370148603603 344 0.0761144638859902 0.778971606453777 8083 0.231302103953508 1 1 0 -6.90795009948971 LTS-002 NA NA NA NA LTS-002 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.661895893814142 71 0.302604144734441 0 NA NA -5.76441539265509 LTS-002 chrX 2699993 2700157 165 * XG 0.466 1 NA 0.836806206048923 3 0.16010309178776 1 1 0 -5.76442863408474 LTS-002 chrX 2700158 12712575 10012418 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.440055689355156 55 0.0762092326299585 0.833276589526489 2812 0.240075509123358 1 1 0 -7.28686010862816 LTS-002 chrX 12712576 12720018 7443 * FRMPD4 NA 0 NA 0.522 1 NA NA NA NA NA LTS-002 chrX 12720019 13613120 893102 * c(GS1-600G8.3, LINC01203, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.466944645375613 8 0.0223478985908871 0.721544355732556 612 0.14715063834016 0 0 0 -9.03270899173765 LTS-002 chrX 13613121 17171300 3558180 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, PIGA, GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, REPS2, RAB9A, SYAP1) 0.458546681141876 42 0.0340667514448761 0.811556326333935 2460 0.213067405161043 2 1 1 -8.02404964754812 LTS-002 chrX 17171301 18209048 1037748 * c(MIR4768, RAI2, BEND2, NHS, SCML1, REPS2) 0 1 NA 0.875446580715015 398 0.274478276215576 2 2 0 -5.77207071890513 LTS-002 chrX 18209049 21874560 3665512 * c(PHKA2-AS1, SCARNA9L, MIR23C, ADGRG2, SCML2, BEND2, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, SH3KBP1, MAP3K15, YY2, MBTPS2, PDHA1, PHKA2, PPEF1, RPS6KA3, RS1, CDKL5, LOC729609) 0.314028044548463 10 0.187636202382281 0.827664580094133 2148 0.222559766357016 1 1 0 -7.0120881702229 LTS-002 chrX 21874561 23095167 1220607 * c(PTCHD1-AS, PHEX-AS1, ZNF645, DDX53, YY2, MBTPS2, PHEX, SMS) 0.482 1 NA 0.850215793514123 557 0.222102558716065 2 2 0 -5.81687743097936 LTS-002 chrX 23095168 49021537 25926370 * c(SNORA11C, HDAC6, SUPT20HL1, LOC100132831, UXT-AS1, MIR4769, PQBP1, PTCHD1-AS, ZFX-AS1, ATP6AP2, SSX3, TIMM17B, PRDX4, EBP, PIM2, IL1RAPL1, WDR45, PRAF2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, CXorf38, DDX3X, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF2S3, ELK1, ACOT9, FTSJ1, CXorf58, TAB3, HYPM, GATA1, GK, GPR82, GPKOW, PCSK1N, SSX6, SSX9, GPR34, LINC01281, NA NA NA NA NA NA NA NA NA LTS-002 CFAP47, MAGEB18, ERAS, ZNF81, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, SPACA5, LOC392452, CXXC1P1, GLOD5, ZNF674-AS1, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, TBC1D25, OTC, CDK16, PDK3, CFP, FTHL17, POLA1, NDUFB11, BCOR, OTUD5, KRBOX4, PRRG1, CHST7, GRIPAP1, ZNF630, MID1IP1, RBM3, NYX, RP2, RPGR, SAT1, DUSP21, ZNF674, NA, WDR13, PORCN, SSX1, SSX5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 SCARNA23, SUV39H1, SYN1, DYNLT3, TFE3, TIMP1, TSPAN7, LINC01545, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, ZNF41, ZNF157, APOO, CXorf36, MAGIX, CXorf21, EFHC2, KLHL15, PPP1R2P9, USP11, USP9X, RBM10, TMEM47, SRPX, UXT, SLC9A7, INE1, CASK, CCDC120, RGN, SLC38A5, MED14, SYTL5, PCYT1B, JADE3) 0.443272803931598 101 0.107337588112376 0.839155688835291 10709 0.220416089636302 2 1 1 -8.11546746786579 LTS-002 NA NA NA NA LTS-002 chrX 49021538 49857112 835575 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, USP27X-AS1, GAGE1, GAGE2C, GAGE4, GAGE2E, CCDC22, USP27X, PRICKLE3, MIR188, FOXP3, PLP2, MIR362, MIR500A, MIR501, MIR502, NA, GAGE2B, GAGE13, SYP, MIR532, MIR660, GAGE12J, GAGE2D, GAGE2A, CACNA1F, MAGIX, PAGE1, PPP1R3F, PAGE4) 0 1 NA 0.863472221656119 897 0.262034189767182 2 2 0 -5.77866485348183 LTS-002 chrX 49857113 57313102 7455990 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, CLCN5, DGKK, FOXR2, PAGE3, RIBC1, USP51, SPIN3, XAGE3, XAGE5, NUDT10, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, SPANXN5, PFKFB1, GPR173, SPIN2A, GNL3L, FAM120C, LINC01420, NUDT11, SHROOM4, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, NA NA NA NA NA NA NA NA NA LTS-002 CCNB3, AKAP4, TSR2, FAM104B, PAGE5, BMP15, MAGED1) 0.331662866059227 29 0.130719004464075 0.851440972886689 4497 0.231914899956874 2 2 0 -7.03327567589107 LTS-002 NA NA NA NA LTS-002 chrX 57313103 57937169 624067 * c(FAAH2, ZXDB, ZXDA) NA 0 NA 0.861565758500761 279 0.211520088808053 2 NA NA -5.78241110892649 LTS-002 chrX 61999880 62568202 568323 * SPIN4 0.415 1 NA 0.878409770751745 37 0.211906819144642 2 2 0 -5.76997592100617 LTS-002 chrX 62568203 69640394 7072192 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, SPIN4, ASB12, AWAT1, AWAT2, EDA, EFNB1, ARHGEF9, KIF4A, FAM155B, YIPF6, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, MTMR8, ZC4H2, EDA2R, PJA1, LAS1L, FRMD8P1, LINC01278, STARD8, HEPH) 0.240777186755838 15 0.235859885767558 0.848407920408229 2853 0.280274322521328 2 2 0 -7.08510554444871 LTS-002 chrX 69640395 69723852 83458 * c(DLG3, KIF4A, GDPD2) 0.473 1 NA 0.916200772964361 251 0.236257367397088 2 2 0 -5.76461296897798 LTS-002 chrX 69723853 101439808 31715956 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, DACH2, COX7B, MAP2K4P1, APOOL, HDX, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, ZCCHC5, ABCB7, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, NA NA NA NA NA NA NA NA NA LTS-002 KIAA2022, BEX5, SATL1, IL2RG, ZCCHC13, FLJ44635, ARL13A, XKRX, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, NAP1L2, NAP1L3, NONO, MIR384, TBX22, RLIM, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, RPL36A, BCYRN1, RPS4X, TNMD, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-002 FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, ARMCX2, MED12) 0.424574737275261 96 0.130395275836689 0.854206478402681 10112 0.464346226804473 2 1 1 -6.99139152429835 LTS-002 NA NA NA NA LTS-002 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.065 1 NA NA NA NA NA LTS-002 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.290537467452767 43 0.324593220173347 0 NA NA -6.2954155639091 LTS-002 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.86 1 NA NA NA NA NA LTS-002 chrX 101768565 102006226 237662 * c(ARMCX5-GPRASP2, TMSB15A, GPRASP2, NXF4, ARMCX5, BHLHB9, GPRASP1) 0.445549097457943 3 0.029022979401387 0.80953222113715 309 0.18604102430467 2 1 1 -7.33377401595321 LTS-002 chrX 102006227 102142875 136649 * c(LINC00630, BHLHB9) 0 1 NA 0.963715268549696 43 0.366918216843489 3 3 0 -5.76667799440332 LTS-002 chrX 102142876 103348382 1205507 * c(RAB40A, H2BFWT, TMEM31, BEX3, RAB40AL, H2BFM, TMSB15B, TCEAL5, MORF4L2-AS1, SLC25A53, GLRA4, TCEAL9, RAB9B, PLP1, BEX1, NXF3, BEX4, TCEAL7, TCEAL4, BEX2, TCEAL3, TCEAL8, TCEAL1, MORF4L2) 0.308401507974155 17 0.222483839465992 0.868548717365125 917 0.320629363650409 2 2 0 -6.77689949078022 LTS-002 chrX 103348383 103348798 416 * SLC25A53 0.361 1 NA 1.0458280156919 9 0.612354676637649 3 3 0 -5.76441042008963 LTS-002 chrX 103348799 107399513 4050715 * c(MID2, ATG4A, COL4A6, PIH1D3, MUM1L1, FAM199X, TSC22D3, NRK, IL1RAPL2, LOC286437, VSIG1, SLC25A53, NUP62CL, TBC1D8B, CXorf57, RBM41, TEX13B, TEX13A, PRPS1, PSMD10, ZCCHC18, SERPINA7, RNF128, MORC4, ESX1, CLDN2, RIPPLY1) 0.415927013035334 12 0.136546251460371 0.839488884000518 2136 0.232914097703081 2 1 1 -6.95916850980787 LTS-002 chrX 107399514 108867694 1468181 * c(COL4A5, COL4A6, KCNE5, GUCY2F, NXT2, IRS4) 0 1 NA 0.812021231186196 881 0.217564956194856 1 1 0 -5.79309435217557 LTS-002 chrX 108867695 114058090 5190396 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, MIR3978, AMOT, DCX, ACSL4, KCNE5, HTR2C, ZCCHC16, LHFPL1, LINC00890, PAK3, MIR448, RGAG1, SNORA35, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, TMEM164, CHRDL1, AMMECR1) 0.299245059354937 9 0.223209045017844 0.864246391577225 1729 0.228849880568881 2 2 0 -6.8884833304118 LTS-002 chrX 114058091 114142704 84614 * c(HTR2C, MIR448) 0.45 1 NA 0.788631972961999 39 0.206730182656168 1 1 0 -5.76453195508987 LTS-002 chrX 114142705 117054395 2911691 * c(SLC6A14, RBMXL3, AGTR2, CT83, HTR2C, IL13RA2, LUZP4, PLS3, LRCH2, KLHL13) 0.393599570150911 9 0.149667130660008 0.846136873738977 728 0.221218351036757 2 1 1 -6.89191740195212 LTS-002 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.804 1 NA NA NA NA NA LTS-002 chrX 117079357 132438872 15359516 * c(ZBTB33, TEX13C, PRR32, MIR1277, SLC25A5-AS1, HS6ST2-AS1, TENM1, ENOX2, STAG2, UTP14A, PGRMC1, DCAF12L1, ACTRT1, GPR119, DOCK11, ARHGAP36, AKAP14, RHOXF1, NKAPP1, ZCCHC12, ELF4, SLC25A43, GPC4, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, DCAF12L2, SOWAHD, OR13H1, IGSF1, IL13RA1, LAMP2, SH2D1A, NDUFA1, OCRL, ZDHHC9, TFDP3, RBMX2, STK26, SASH3, WDR44, TMEM255A, NA NA NA NA NA NA NA NA NA LTS-002 ZNF280C, MBNL3, NKRF, THOC2, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, UPF3B, CT47A7, SMARCA1, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, XPNPEP2, MIR766, RNF113A, NKAP, LONRF3, USP26, CUL4B, APLN, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, RAB33A) 0.441819209677781 66 0.102547437428133 0.810835319730877 6409 0.228356419647038 1 1 0 -7.06258785604356 LTS-002 NA NA NA NA LTS-002 chrX 132438873 133379999 941127 * c(GPC4, GPC3, CCDC160, MIR106A, MIR19B2, MIR92A2, MIR363, MIR20B, MIR18B) 0 1 NA 0.823660894870056 164 0.302694299264822 1 1 0 -5.78205487537269 LTS-002 chrX 133380000 134022913 642914 * c(MIR450B, LINC00629, PLAC1, FAM122B, FAM122C, HPRT1, MIR424, MIR450A1, MOSPD1, MIR450A2, MIR503, MIR542, PHF6, MIR503HG) 0.328362900962842 9 0.221900941362982 0.835908842929872 501 0.255943291638851 2 2 0 -6.780517741598 LTS-002 chrX 134022914 134155904 132991 * c(FAM127C, MOSPD1, SMIM10) 0.494 1 NA 0.709483043886922 77 0.164698720363594 0 0 0 -5.7804965472854 LTS-002 chrX 134155905 139047770 4891866 * c(MIR934, LINC00892, LINC00633, FGF13-AS1, SLC9A6, ADGRG4, LINC00889, INTS6L, ZNF449, F9, FGF13, FHL1, FAM127B, SNORD61, RBMX, HTATSF1, ATP11C, CXorf66, SMIM10L2A, MCF2, FAM127C, CT45A3, CT45A5, VGLL1, CT45A6, CT45A1, CT55, SAGE1, MIR504, MIR505, SMIM10L2B, SRD5A1P1, BRS3, CT45A2, ZIC3, ZNF75D, MAP7D3, GPR101, FAM127A, MMGT1, ARHGEF6, CD40LG) 0.433078436516223 13 0.130548595922882 0.848179026097313 2288 0.707882477129826 2 1 1 -6.76535301677035 LTS-002 chrX 139047771 139099437 51667 * character(0) NA 0 NA 0.449 1 NA NA NA NA NA LTS-002 chrX 139099438 139793912 694475 * c(LINC00632, LOC389895, SOX3) NA 0 NA 0.627349687511648 73 0.197310488426811 0 NA NA -5.78998188104784 LTS-002 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 1.154 1 NA NA NA NA NA LTS-002 chrX 139795670 144910936 5115267 * c(MIR320D2, CDR1, SLITRK4, SPANXN3, MAGEC3, NA, NA, LDOC1, LINC00632, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, SPANXA2-OT1, SPANXC, SLITRK2, TMEM257, MAGEC1) 0.42563303627382 19 0.0683370559533718 0.905104029693149 799 0.241652099339118 2 1 1 -6.74446532765014 LTS-002 chrX 144910937 144911039 103 * TMEM257 0 1 NA 1.88631249404521 3 2.31118180447435 10 10 0 -5.76441013491683 LTS-002 chrX 144911040 149841716 4930677 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, LINC00894, MIR2114, MIR514B, MAMLD1, MAGEA8-AS1, FMR1NB, FMR1, AFF2, IDS, MAGEA8, MAGEA11, MTM1, CXorf40B, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, TMEM185A, TMEM257, CXorf40A) 0.134417640979702 10 0.223387282041252 0.844652140263114 1311 0.364141965983929 2 2 0 -7.39142721535111 LTS-002 chrX 149841717 149931106 89390 * MTMR1 0.495 1 NA 0.859146746230377 93 0.219751559219351 2 2 0 -5.76710381898117 LTS-002 chrX 149931107 152834736 2903630 * c(CSAG4, NA, NA, MIR4330, MAGEA10-MAGEA5, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, ZFP92, CSAG1, VMA21, GABRA3, GABRE, PNMA3, HMGB3, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA10, MAGEA12, ATP2B3, NSDHL, HAUS7, GABRQ, MIR452, BGN, MIR767, ZNF185, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.440303088348377 74 0.0844137217290066 0.889508753046768 2152 0.324403512452774 2 1 1 -6.78437681633323 LTS-002 chrX 152834737 152846117 11381 * ATP2B3 NA 0 NA 0.955013868484648 36 0.319940385071969 2 NA NA -5.76462326950329 LTS-002 chrX 152846118 152990979 144862 * c(BCAP31, PNCK, DUSP9, ABCD1, ATP2B3, SLC6A8, FAM58A) 0.49 1 NA 0.79948052627847 365 0.241622494100355 1 1 0 -5.76525255479921 LTS-002 chrX 152990980 154563642 1572663 * c(SMIM9, CMC4, MIR718, MIR3202-2, MIR3202-1, RAB39B, CLIC2, GAB3, TEX28, DKC1, DNASE1L1, EMD, ABCD1, F8, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MECP2, MPP1, MTCP1, PLXNB3, ATP6AP1, AVPR2, PLXNA3, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.450036248716844 64 0.0800041665581654 0.819097785070885 3986 0.249712566428852 1 1 0 -6.97057893839001 LTS-002 chrX 154563643 154563741 99 * CLIC2 NA 0 NA 0.663 1 NA NA NA NA NA LTS-002 chrX 154563742 154580343 16602 * CLIC2 NA 0 NA 0.118511792061702 38 0.341188000636151 0 NA NA -6.00620538362484 LTS-002 chrX 154580344 154580410 67 * character(0) NA 0 NA 0.072 1 NA NA NA NA NA LTS-002 chrX 154580411 154719797 139387 * TMLHE 0 1 NA 1.06229449947687 4 2.17163670994943 3 3 0 -5.7644335729306 LTS-002 chrX 154719798 154774986 55189 * TMLHE NA 0 NA 1.79800342108355 34 6.12910772847378 9 NA NA -5.76441064116374 LTS-002 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.250809999178568 25 0.305010120050685 0 NA NA -8.35598767788496 LTS-002 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.993038746590229 21 0.716004419379817 3 NA NA -5.77325563563205 LTS-002 chr1 65893 976172 910280 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, KLHL17, AGRN, HES4, LINC01128, LOC729737, OR4F5, LINC00115, PLEKHN1, PERM1, ISG15) 0.413 1 NA 0.89874690470144 503 0.189979621173516 2 2 0 -5.82979332896706 LTS-003 chr1 976173 1405139 428967 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, SCNN1D, TMEM88B, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, TNFRSF18) 0.447249321134595 13 0.130813480447034 0.921541925602331 1782 0.199269485194142 2 1 1 -6.74977505075801 LTS-003 chr1 1405140 1407251 2112 * c(ATAD3C, ATAD3B) NA 0 NA 0.299 1 NA NA NA NA NA LTS-003 chr1 1407252 1420462 13211 * ATAD3B NA 0 NA 0.567559545605287 46 0.254044007941566 1 NA NA -5.76442340711083 LTS-003 chr1 1420463 2985823 1565361 * c(LOC100129534, NA, TTC34, RER1, LOC115110, FAM213B, ACTRT2, MIB2, CALML6, FAAP20, GABRD, GNB1, SSU72, TMEM240, TMEM52, HES5, LINC00982, PEX10, ATAD3A, PANK4, PRKCZ, PRDM16, FNDC10, SKI, NADK, CDK11A, SLC35E2B, MMEL1, MORN1, ATAD3B, MMP23B, MMP23A, CFAP74, TNFRSF14, PLCH2, CDK11B, SLC35E2) 0.409657704833339 78 0.103104433993036 0.914260971366361 2630 0.328155687036003 2 1 1 -6.78804413760212 LTS-003 chr1 2985824 7309633 4323810 * c(LINC01134, MIR4251, MIR4252, MIR4689, MIR4417, ACOT7, TPRG1L, PHF13, CCDC27, DFFB, MEGF6, CAMTA1, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, GPR153, SMIM1, RNF207, HES3, WRAP73, HES2, DNAJC11, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, THAP3, CEP104, KLHL21) 0.365869301799947 86 0.0780215165524462 1.2721594848323 3507 0.46728579601064 3 2 1 -6.80108534249091 LTS-003 chr1 7309634 10596358 3286725 * c(ENO1-AS1, APITD1-CORT, UBE4B, UTS2, PARK7, RBP7, CORT, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TNFRSF9, CENPS, MIR34A, RERE, SLC45A1, PEX14, PGD, PIK3CD, ERRFI1, CTNNBIP1, PIK3CD-AS1, NMNAT1, SLC2A5, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, VAMP3, H6PD) 0.459010989587427 65 0.0341316033340634 0.908904238174159 3377 0.217160305128151 2 1 1 -7.15464688910683 LTS-003 chr1 10596359 10659207 62849 * PEX14 NA 0 NA 1.347 1 NA NA NA NA NA LTS-003 chr1 10659208 12092070 1432863 * c(NPPA-AS1, MTOR-AS1, ANGPTL7, MAD2L2, MASP2, CLCN6, C1orf127, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, DRAXIN, MTHFR, NPPA, NPPB, PEX14, PLOD1, EXOSC10, CASZ1, AGTRAP, DISP3, MIIP, SRM, KIAA2013, FBXO44, MFN2) 0.369064650931076 25 0.0402493478208033 1.24763495200621 2541 0.296529452940803 3 2 1 -6.90114974203538 LTS-003 chr1 12092071 16950346 4858276 * c(MIR4632, PDPN, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, SPATA21, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, VPS13D, NBPF1, NECAP2, MIIP, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, NA NA NA NA NA NA NA NA NA LTS-003 PRAMEF1, PRAMEF2, PRAMEF22, NA, SNORA59B, TNFRSF1B, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2, CROCCP2, DHRS3, C1orf158, TNFRSF8) 0.40186269954592 114 0.0830237179520801 0.917764884475508 4380 0.227067846430486 2 1 1 -6.93651939665635 LTS-003 NA NA NA NA LTS-003 chr1 16950347 16972067 21721 * CROCCP2 0 1 NA 1.00451872981888 5 0.157252344974566 2 2 0 -5.7654852360202 LTS-003 chr1 16972068 17197666 225599 * c(MST1P2, MST1L, ESPNP, CROCC) 0.327013065933644 50 0.084980910221301 0.979103780822705 381 0.332598976312416 3 2 1 -6.91574089815705 LTS-003 chr1 17197667 17394207 196541 * c(PADI2, ATP13A2, MFAP2, SDHB, CROCC) 0.439 1 NA 0.946150423766874 427 0.242697400552589 2 2 0 -5.76484223695705 LTS-003 chr1 17394208 25586803 8192596 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, PADI1, PLA2G2E, NA NA NA NA NA NA NA NA NA LTS-003 HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, NCMAP, LDLRAD2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 AKR7A2, RUNX3, ALDH4A1, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.44221005701849 258 0.0723427441206898 0.946741017952405 9860 0.230198752732981 2 1 1 -6.75843948924871 LTS-003 NA NA NA NA LTS-003 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 1.641 1 NA NA NA NA NA LTS-003 chr1 25598904 25656954 58051 * c(RSRP1, RHD) 0.45338091478886 4 0.0519101788348554 1.73078773564957 83 0.506285006770994 4 2 2 -6.81279269366277 LTS-003 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.064 1 NA NA NA NA NA LTS-003 chr1 25666924 27278573 1611650 * c(MIR1976, MIR3917, CNKSR1, CD52, NUDC, KDF1, PDIK1L, PAQR7, EXTL1, TMEM50A, ZNF683, LDLRAP1, SFN, HMGN2, CATSPER4, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, LOC646471, CEP85, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, ZDHHC18, NR0B2, TRIM63, UBXN11) 0.431818329851702 44 0.0556008264574225 0.922696070061266 2854 0.210839118294358 2 1 1 -6.76850510286435 LTS-003 chr1 27278574 27278971 398 * KDF1 NA 0 NA 0.739158434501865 9 0.265550894891691 2 NA NA -5.76464125698313 LTS-003 chr1 27278972 27320263 41292 * c(KDF1, TRNP1) NA 0 NA 1.929 1 NA NA NA NA NA LTS-003 chr1 27320264 27331765 11502 * c(FAM46B, TRNP1) 0.254 1 NA 1.39707990577002 19 0.334742853213893 3 3 0 -5.76445812896273 LTS-003 chr1 27331766 29213759 1881994 * c(WASF2, GMEB1, RCC1, RAB42, FAM46B, FAM76A, EPB41, EYA3, FGR, DNAJC8, WDTC1, STX12, IFI6, RNU11, AHDC1, SMPDL3B, GPR3, CD164L2, OPRD1, YTHDF2, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, ACTG1P20, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, TMEM222, SNHG3, SYTL1, SNHG12, FCN3, MAP3K6, ATPIF1, THEMIS2) 0.281399575236285 34 0.0431024977459887 1.52891638014875 2755 0.36882159371195 4 3 1 -6.91092399986547 LTS-003 chr1 29213760 29313896 100137 * EPB41 NA 0 NA 1.818 1 NA NA NA NA NA LTS-003 chr1 29313897 32793407 3479511 * c(MATN1-AS1, MIR4254, MIR4420, PTPRU, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, EPB41, FABP3, KPNA6, LINC01226, HCRTR1, HDAC1, MTMR9LP, SERINC2, LCK, TMEM200B, MATN1, MECR, ZCCHC17, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, TINAGL1, SRSF4, SNORD103C, SNORD103A, LAPTM5, CCDC28B, NKAIN1, PTP4A2, FAM167B, EIF3I, SPOCD1, SNRNP40, SDC3, PUM1) 0.236767349780854 33 0.0353007371800441 1.89817646066903 3060 0.484044594874999 5 4 1 -6.96678976911909 LTS-003 chr1 32793408 32794673 1266 * HDAC1 NA 0 NA 2.242 1 NA NA NA NA NA LTS-003 chr1 32794674 33415430 620757 * c(FAM229A, TMEM54, RNF19B, FNDC5, HDAC1, HPCA, ZBTB8OS, BSDC1, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, SYNC, TSSK3, YARS) 0.209325397255805 10 0.0512086147266475 2.18745811894968 1080 0.545458958501306 5 4 1 -6.77429530024983 LTS-003 chr1 33415431 33429647 14217 * RNF19B NA 0 NA 1.848 1 NA NA NA NA NA LTS-003 chr1 33429648 33647061 217414 * c(AZIN2, RNF19B, AK2, TRIM62) 0.270271240534549 5 0.051550945675128 1.78662725545665 270 0.337104437593111 4 3 1 -6.73533413182647 LTS-003 chr1 33647062 33647158 97 * TRIM62 NA 0 NA 1.428 1 NA NA NA NA NA LTS-003 chr1 33647159 36219483 2572325 * c(MIR3605, TMEM35B, SMIM12, CSMD2, GJB4, HMGB4, A3GALT2, C1orf216, ZNF362, PHC2, NCDN, GJA4, GJB3, GJB5, TFAP2E, CSMD2-AS1, TRIM62, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZSCAN20, ZMYM1, KIAA0319L, C1orf94, ZMYM4, ZMYM6) 0.330070424470342 23 0.122827975080804 1.29083187162226 2358 0.331436631369908 3 2 1 -6.78985139045726 LTS-003 chr1 36219484 36225881 6398 * CLSPN NA 0 NA 2.185 1 NA NA NA NA NA LTS-003 chr1 36225882 36787888 562007 * c(COL8A2, AGO3, AGO4, AGO1, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, CLSPN, SH3D21, THRAP3) 0.230289637353535 6 0.0634150350206216 2.14926631333632 1049 0.472093530391568 5 4 1 -6.74149693055197 LTS-003 chr1 36787889 36787922 34 * c(EVA1B, SH3D21) NA 0 NA 2.40028471107537 2 0.799737769521985 6 NA NA -5.76441025394814 LTS-003 chr1 36787923 36814473 26551 * c(EVA1B, SH3D21, STK40) 0.242 1 NA 2.57419553081915 117 0.34287210957572 6 6 0 -5.76441853357293 LTS-003 chr1 36814474 38555010 1740537 * c(MIR4255, MIR3659, MIR5581, SF3A3, C1orf122, OSCP1, CSF3R, MANEAL, FHL3, RSPO1, EPHA10, GRIK3, GNL2, INPP5B, MTF1, UTP11, POU3F1, C1orf109, CDCA8, MEAF6, MRPS15, LINC01137, DNALI1, YRDC, SNIP1, ZC3H12A, STK40, LSM10) 0.167145479482693 26 0.0595023981417168 2.52025571535541 1954 0.621266906282591 7 6 1 -6.80349484503231 LTS-003 chr1 38555011 38678125 123115 * LINC01343 NA 0 NA 2.46765710217364 15 0.297040850164866 6 NA NA -5.7654003846116 LTS-003 chr1 38678126 39175347 497222 * LINC01343 NA 0 NA 1.341 1 NA NA NA NA NA LTS-003 chr1 39175348 39494426 319079 * c(GJA9-MYCBP, MYCBP, NDUFS5, RHBDL2, RRAGC, AKIRIN1) 0.348 1 NA 1.28163722489033 313 0.344677647067955 3 3 0 -5.7698878248387 LTS-003 chr1 39494427 43875958 4381532 * c(LOC100129924, NFYC-AS1, SLFNL1-AS1, ZMPSTE24, PPIE, PPIH, CAP1, EBNA1BP2, MED8, ERMAP, TMCO2, ZNF684, TMEM125, COL9A2, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, MACF1, HEYL, RIMKLA, GUCA2A, GUCA2B, ZFP69, BMP8A, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MYCL, NDUFS5, NFYC, YBX1, ZNF691, HPCAL4, TRIT1, PPT1, HIVEP3, RLF, OXCT2, P3H1, KIAA0754, SMAP2, EXO5, NA NA NA NA NA NA NA NA NA LTS-003 ELOVL1, SLC2A1, ZFP69B, BMP8B, SNORA55, TIE1, PPIEL, CCDC30, C1orf50, PPCS, ZMYND12, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3, CDC20) 0.360686942605779 85 0.0637934121973101 1.24382485773196 5472 0.298596208853931 3 2 1 -6.96389058322089 LTS-003 NA NA NA NA LTS-003 chr1 43875959 43880723 4765 * SZT2 NA 0 NA 1.34 1 NA NA NA NA NA LTS-003 chr1 43880724 44088448 207725 * c(SZT2, PTPRF, HYI) NA 0 NA 1.43830312787633 616 0.279597541509281 3 NA NA -5.76958492517479 LTS-003 chr1 44088449 45671966 1583518 * c(KDM4A-AS1, MIR5584, KIF2C, PLK3, KLF17, CCDC24, BTBD19, DPH2, BEST4, SNORD55, C1orf228, TCTEX1D4, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, RPS8, ST3GAL3, SLC6A9, UROD, ERI3, TMEM53, HECTD3, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A) 0.373758068549475 18 0.0428203802799585 1.27338363294556 2052 0.278328810794297 3 2 1 -6.92618971510844 LTS-003 chr1 45671967 45672036 70 * ZSWIM5 NA 0 NA 1.471 1 NA NA NA NA NA LTS-003 chr1 45672037 45800156 128120 * c(LINC01144, MUTYH, ZSWIM5, HPDL) 0.272 1 NA 1.57932716479758 103 0.228542263383985 4 4 0 -5.78110511072055 LTS-003 chr1 45800157 48267266 2467110 * c(EFCAB14-AS1, MKNK1-AS1, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, LRRC41, TOE1, CCDC163, DMBX1, KNCN, MOB3C, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, FAAH, FOXE3, FOXD2, MAST2, MMACHC, CYP4X1, CYP4A22, IPP, TEX38, NSUN4, TRABD2B, MUTYH, NASP, PRDX1, TMEM69, CMPK1, LURAP1, POMGNT1, GPBP1L1, ATPAF1, STIL, TAL1, RPS15AP10, FAAHP1, UQCRH, RAD54L, FOXD2-AS1, PIK3R3, MKNK1, EFCAB14) 0.272905903126697 71 0.0639541082949863 1.59956193590027 3139 0.421059485632337 4 3 1 -6.80581203852034 LTS-003 chr1 48267267 52377797 4110531 * c(MIR761, CDKN2C, FAF1, OSBPL9, ELAVL4, SLC5A9, EPS15, TTC39A, RNF11, C1orf185, TRABD2B, SKINT1L, NRDC, SPATA6, RAB3B, DMRTA2, BEND5, AGBL4) 0.293319700080905 7 0.134231676057266 1.28268703495816 1794 0.338452409682889 3 2 1 -6.91846734958808 LTS-003 chr1 52377798 52824024 446227 * c(KTI12, CC2D1B, TXNDC12, RAB3B, BTF3L4, ZFYVE9) 0.366 1 NA 1.31030966730242 658 0.332695073983513 3 3 0 -5.767578960511 LTS-003 chr1 52824025 66107235 13283211 * c(LINC01135, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, CC2D1B, AK4, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, GPX7, ALG6, FAM151A, FAM159A, JAK1, JUN, MROH7, LDLRAD1, LEPR, NA NA NA NA NA NA NA NA NA LTS-003 MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, ROR1, ORC1, MRPL37, HOOK1, HSPB11, PGM1, YIPF1, L1TD1, LEPROT, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, PRKAA2, NDC1, CACHD1, CYB5RL, SCP2, DMRTB1, SLC1A7, COA7, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, ZYG11B, TM2D1, EFCAB7, ATG4C, PRPF38A, DOCK7, PLPP3, TMEM59, DNAJC6) 0.347293173227086 173 0.0677947582873739 1.27596771945925 8320 0.333733574171527 3 2 1 -7.00620843560618 LTS-003 NA NA NA NA LTS-003 chr1 66107236 66378891 271656 * PDE4B NA 0 NA 1.714 1 NA NA NA NA NA LTS-003 chr1 66378892 74491745 8112854 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, NEGR1-IT1, ZRANB2-AS2, HHLA3, LRRIQ3, CTH, IL23R, GADD45A, TCTEX1D1, SLC35D1, NEGR1, SERBP1, IL12RB2, C1orf141, MIR186, PDE4B, PIN1P1, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, ZRANB2) 0.30087046408885 38 0.0873825812446546 1.578713845961 2976 0.46504119674846 4 3 1 -7.03985811129431 LTS-003 chr1 74491746 77530657 3038912 * c(FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT) 0.339236930216287 30 0.118488449410388 1.38747087560282 1646 0.409164277967764 3 2 1 -6.74553653577318 LTS-003 chr1 77530658 86144410 8613753 * c(PIGK, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, WDR63, SAMD13, C1orf52, CTBS, MGC27382, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, ZZZ3, AK5, GNG5, CYR61, MIGA1, UOX, LINC01555, ZNHIT6, GIPC2, MCOLN3, PRKACB, PTGFR, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, SYDE2, FUBP1, BCL10, NEXN) 0.368494999634056 73 0.0651966875460025 1.28850686554638 3293 0.332721639192824 3 2 1 -6.89645250018551 LTS-003 chr1 86144411 86487921 343511 * c(COL24A1, ZNHIT6) 0.293138185882425 6 0.013377842377105 1.66456834099464 246 0.475937406737384 7 5 2 -7.08162495293453 LTS-003 chr1 86487922 95211525 8723604 * c(MIR760, LOC100129046, CCDC18-AS1, LINC01364, GLMN, GBP4, GBP5, CLCA1, GBP6, HFM1, DR1, F3, CLCA4, MTF2, KIAA1107, LRRC8B, ABCA4, EPHX4, COL24A1, GBP1, GBP2, GBP3, GFI1, SNORA66, GCLM, ZNF326, BTBD8, GTF2B, DNTTIP2, LINC01140, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, SH3GLB1, FNBP1L, LRRC8D, PKN2, KYAT3, ODF2L, ABCD3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, NA NA NA NA NA NA NA NA NA LTS-003 EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C, LMO4, SELENOF, ARHGAP29, CLCA3P, CLCA2, HS2ST1) 0.351802586640264 95 0.0975385323118731 1.2585647564413 5483 0.334159363944786 3 2 1 -6.99554472916093 LTS-003 NA NA NA NA LTS-003 chr1 95211526 95211578 53 * character(0) NA 0 NA 1.21133132318889 3 0.211887548792593 3 NA NA -5.76441928483343 LTS-003 chr1 95211579 95285947 74369 * SLC44A3 NA 0 NA 1.67 1 NA NA NA NA NA LTS-003 chr1 95285948 95294089 8142 * SLC44A3 0.225 1 NA 1.98002376612887 27 0.568331892120387 5 5 0 -5.76451922523985 LTS-003 chr1 95294090 98348977 3054888 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, RWDD3, FLJ31662, PTBP2, LOC729970) 0.247808414096539 20 0.0283272232833959 2.04961724437516 641 0.586632714915763 5 4 1 -7.18251373838337 LTS-003 chr1 98348978 98349267 290 * DPYD NA 0 NA 1.328 1 NA NA NA NA NA LTS-003 chr1 98349268 100492469 2143202 * c(LOC100129620, MIR2682, PLPPR5, AGL, DPYD, SLC35A3, FRRS1, MIR137HG, MIR137, SNX7, PALMD, LOC729987, PLPPR4) 0.273853285708856 18 0.0398879148569336 1.4904172374585 765 0.393113732364553 4 3 1 -6.95054189721584 LTS-003 chr1 100492470 100503624 11155 * SLC35A3 NA 0 NA 0.963 1 NA NA NA NA NA LTS-003 chr1 100503625 100817384 313760 * c(LRRC39, DBT, SASS6, TRMT13, MFSD14A, MIR553, CDC14A, RTCA) 0.296242487817642 16 0.125163076956958 1.231908337082 520 0.344541654516621 3 2 1 -6.86772437332643 LTS-003 chr1 100817385 100818178 794 * CDC14A 0.37 1 NA 1.00468644335677 7 0.354276459172508 2 2 0 -5.76441792674212 LTS-003 chr1 100818179 102268330 1450152 * c(LINC01349, OLFM3, SLC30A7, S1PR1, EXTL2, DPH5, GPR88, VCAM1, CDC14A) 0.388220778771381 10 0.0560293573842221 1.25253571486355 551 0.297639669238115 3 2 1 -7.02958598389448 LTS-003 chr1 102268331 102268348 18 * OLFM3 NA 0 NA 0.886 1 NA NA NA NA NA LTS-003 chr1 102268349 112539068 10270720 * c(LOC100129138, LINC01160, FAM212B-AS1, VAV3-AS1, LAMTOR5-AS1, CEPT1, VAV3, LAMTOR5, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, ATXN7L2, C1orf194, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, NBPF4, CHIAP2, FNDC7, UBL4B, CELSR2, NTNG1, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, MYBPHL, KCNA2, KCNA3, NA NA NA NA NA NA NA NA NA LTS-003 KCNA10, KCNC4, KCND3, SLC6A17, MIR197, LOC440600, PGCP1, OVGP1, ATP5F1, PRPF38B, PRMT6, RNPC3, LRIF1, FAM212B, PSMA5, TMEM167B, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, RBM15, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, WDR77, EPS8L3, DENND2D, GPR61, PROK1, PSRC1, STRIP1, SLC16A4, DNAJA1P5, CD53) 0.455464445507908 117 0.0703560478907184 0.956710536876753 6461 0.259994711554942 2 1 1 -6.78785802434511 LTS-003 NA NA NA NA LTS-003 chr1 112539069 113269837 730769 * c(MIR4256, FAM19A3, PPM1J, RHOC, MOV10, ST7L, CTTNBP2NL, LOC643355, WNT2B, CAPZA1) 0.366909534526323 21 0.0438567473225533 1.33152773669224 717 0.341530241965769 3 2 1 -6.79715563197228 LTS-003 chr1 113269838 115315039 2045202 * c(AP4B1-AS1, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, BCL2L15, NRAS, TRIM33, RSBN1, OLFML3, LOC643441, DCLRE1B, SLC16A1, CSDE1, SIKE1, LRIG2) 0.453174788071268 21 0.0401735520674272 0.923500389051605 2033 0.235497194604661 2 1 1 -6.89554781268514 LTS-003 chr1 115315040 115487090 172051 * c(SYCP1, SIKE1) NA 0 NA 0.923782906541046 171 0.243352846101167 2 NA NA -5.76700840369813 LTS-003 chr1 115487091 115487474 384 * SYCP1 NA 0 NA 1.448 1 NA NA NA NA NA LTS-003 chr1 115487475 116234083 746609 * c(TSPAN2, NGF, SYCP1, TSHB, VANGL1) 0.047 1 NA 1.31178534871076 208 0.366657634934878 3 3 0 -5.76850752466657 LTS-003 chr1 116234084 116948712 714629 * c(MAB21L3, ATP1A1, NHLH2, SLC22A15, VANGL1, CASQ2, ATP1A1-AS1) 0.358551823065613 28 0.047883608334063 1.33708474839283 761 0.342468981478289 3 2 1 -6.74300491299408 LTS-003 chr1 116948713 117142641 193929 * c(IGSF3, ATP1A1-AS1, CD58) 0.256 1 NA 1.27001125328126 179 0.227919495443542 3 3 0 -5.77458082856671 LTS-003 chr1 117142642 117156490 13849 * IGSF3 0.195249642993646 12 0.0697216869873617 1.13576673314799 44 0.281202434549592 6 5 1 -6.80770830565434 LTS-003 chr1 117156491 117311147 154657 * c(MIR320B1, IGSF3, CD2) 0.417 1 NA 1.18265628494349 83 0.216918934117892 3 3 0 -5.80211285229418 LTS-003 chr1 117311148 118658065 1346918 * c(MIR942, WDR3, MAN1A2, SPAG17, GDAP2, FAM46C, PTGFRN, VTCN1, TRIM45, TTF2, CD2, CD101) 0.372013518551173 27 0.0509690985092831 1.26533560854537 1430 0.630450849597233 3 2 1 -6.82850448703798 LTS-003 chr1 118658066 118693118 35053 * SPAG17 NA 0 NA 0.791 1 NA NA NA NA NA LTS-003 chr1 118693119 120927081 2233963 * c(WARS2, ADAM30, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, HIST2H2BA, NBPF7, NOTCH2, HAO2, LINC00622, FAM72B, TBX15, REG4, ZNF697) 0.384054620372663 51 0.0969837261464773 1.00864394402696 1252 0.6353747531595 2 1 1 -6.898139769466 LTS-003 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 1.13397542694596 81 0.351705629753065 2 NA NA -5.8158660509518 LTS-003 chr1 143912360 144013865 101506 * FAM72D 0.27 1 NA 0.742936315846105 5 0.769062611235262 2 2 0 -5.77117629847665 LTS-003 chr1 144013866 145075854 1061989 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.425545063800373 56 0.0681409539879624 0.958984767381892 532 0.273867815235271 2 1 1 -6.74300149128688 LTS-003 chr1 145075855 145103947 28093 * c(NBPF20, SEC22B, PDE4DIP) 0.271 1 NA 1.07648107569394 14 0.179480446760172 2 2 0 -5.77124529687152 LTS-003 chr1 145103948 145290570 186623 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B) 0.295313290237622 27 0.0808661445435192 1.04180114466543 248 0.761796660545162 4 3 1 -6.82967501954633 LTS-003 chr1 145290571 145441533 150963 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL) 0.479 1 NA 0.905392797315814 101 0.129152005002011 2 2 0 -5.78307831865256 LTS-003 chr1 145441534 148195872 2754339 * c(NBPF10, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, TXNIP, CD160, LIX1L, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, NBPF14, GJA5, GJA8, RNF115, ANKRD34A, LINC01138, ACP6, GPR89B, PDZK1, PRKAB2, BCL9, NBPF13P, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.436970552707888 45 0.0827980566306854 0.955365113353604 1947 0.232704050614481 2 1 1 -6.73440205879027 LTS-003 chr1 148195873 148902223 706351 * c(NBPF14, NBPF15, PPIAL4D, NA, PPIAL4F, PPIAL4E) 0.497 1 NA 0.766665111578799 3 0.0954375886814694 2 2 0 -7.5034955004295 LTS-003 chr1 148902224 149291003 388780 * c(LOC388692, LOC645166) 0.208 1 NA 0.856480008131733 11 1.59218340652074 2 2 0 -5.76561125632318 LTS-003 chr1 149291004 149821899 530896 * c(FCGR1CP, FCGR1A, HIST2H2BC, LOC388692, HIST2H2BF, LINC00869, HIST2H3D) NA 0 NA 0.680661076661603 69 0.287919031522236 1 NA NA -5.90298081179513 LTS-003 chr1 149821900 149856031 34132 * c(HIST2H2BC, HIST2H2BE) NA 0 NA 1.354 1 NA NA NA NA NA LTS-003 chr1 149856032 150190971 334940 * c(SF3B4, MTMR11, VPS45, HIST2H2AB, BOLA1, PLEKHO1, OTUD7B, ANP32E, HIST2H2AC, HIST2H2BE, SV2A) 0.485 1 NA 1.61350425559383 663 0.354449592138751 4 4 0 -5.77601157989535 LTS-003 chr1 150190972 150703452 512481 * c(MIR4257, FALEC, CIART, CTSS, ECM1, ENSA, RPRD2, CA14, MCL1, APH1A, MRPS21, ADAMTSL4, GOLPH3L, C1orf54, TARS2, ANP32E, HORMAD1, PRPF3) 0.377095552175357 21 0.0971193178763211 1.92692904776404 1353 0.589995138404322 5 3 2 -6.78395881587218 LTS-003 chr1 150703453 151096271 392819 * c(MLLT11, GABPB2, BNIPL, CTSK, CTSS, CERS2, ARNT, C1orf56, FAM63A, CDC42SE1, PRUNE1, ANXA9, SETDB1) 0.412258098350372 14 0.198230912083596 1.54726700930629 1053 0.37551990620657 4 2 2 -6.76736631554708 LTS-003 chr1 151096272 151115017 18746 * SEMA6C 0.459 1 NA 1.68806376355363 144 0.465691143164306 4 4 0 -5.76449340928679 LTS-003 chr1 151115018 151510146 395129 * c(TNFAIP8L2-SCNM1, SEMA6C, POGZ, TMOD4, LYSMD1, PI4KB, PSMB4, PSMD4, CGN, ZNF687, RFX5, VPS72, SCNM1, TNFAIP8L2, PIP5K1A, SELENBP1) 0.469448555536813 5 0.0198821528009418 1.57720585418103 1085 0.311311657250208 4 2 2 -8.21599498923084 LTS-003 chr1 151510147 152760315 1250169 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.435432001567618 83 0.0741500214647352 1.71100899162892 1897 0.41862985141006 4 2 2 -6.73618220762567 LTS-003 chr1 152760316 152770687 10372 * c(LCE1D, LCE1E) NA 0 NA 0.231869104169538 40 0.248901946248224 0 NA NA -5.77676180313972 LTS-003 chr1 152770688 152945080 174393 * c(SPRR4, LCE1A, LCE1B, LCE1C, IVL, SMCP, LCE6A) 0.344687674762431 5 0.032225766088644 1.46439485134334 162 0.5126695571622 3 2 1 -6.77184787278851 LTS-003 chr1 152945081 152957648 12568 * SPRR1A NA 0 NA 1.003 1 NA NA NA NA NA LTS-003 chr1 152957649 152976248 18600 * c(SPRR1A, SPRR3) 0.377208219867869 6 0.182048802980593 1.19055615773847 26 1.09731945912966 8 5 3 -6.74299973835578 LTS-003 chr1 152976249 153004778 28530 * c(SPRR1B, SPRR3) 0.39 1 NA 1.02325652337874 5 0.265525893275967 2 2 0 -5.76539364650064 LTS-003 chr1 153004779 157517203 4512425 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, NA NA NA NA NA NA NA NA NA LTS-003 HDGF, S100A7A, RXFP4, IL6R, CYCSP52, ILF2, INSRR, PEAR1, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, MEF2D, ETV3L, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, FCRL5, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.445022002909365 152 0.0819174445111161 0.965275508386769 10504 0.22191586990423 2 1 1 -6.74478709990717 LTS-003 NA NA NA NA LTS-003 chr1 157517204 157519348 2145 * FCRL5 NA 0 NA 1.517 1 NA NA NA NA NA LTS-003 chr1 157519349 158549511 1030163 * c(FCRL1, FCRL3, OR10T2, OR6P1, OR10X1, OR10R2, OR10K2, OR10K1, OR6Y1, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.437562571284446 52 0.0877982054877993 1.0775133730417 1130 0.375578364015082 2 1 1 -6.79155418632928 LTS-003 chr1 158549512 158549519 8 * OR10X1 NA 0 NA 0.922 1 NA NA NA NA NA LTS-003 chr1 158549520 161518487 2968968 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, NA NA NA NA NA NA NA NA NA LTS-003 ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.444445617095403 128 0.0609434837058138 0.972385730887192 5370 0.260092747649784 2 1 1 -6.75372742657533 LTS-003 NA NA NA NA LTS-003 chr1 161518488 161518754 267 * FCGR3A NA 0 NA 0.55 1 NA NA NA NA NA LTS-003 chr1 161518755 161570491 51737 * c(FCGR3A, FCGR2C) 0.42604939737555 2 0.0558614357137372 0.644485256744133 70 0.516454634045349 2 1 1 -6.76462698283654 LTS-003 chr1 161570492 161933066 362575 * c(DUSP12, FCRLB, FCGR2B, FCGR3B, ATF6, HSPA7, RPL31P11, FCRLA, FCGR2C) 0.436294709465481 36 0.0608855483674082 0.946864466359555 516 0.347073057442563 2 1 1 -6.73400436442822 LTS-003 chr1 161933067 162039624 106558 * c(ATF6, OLFML2B, NOS1AP) NA 0 NA 1.01197671999767 111 0.257403216546755 2 NA NA -5.7670754451261 LTS-003 chr1 162039625 162039627 3 * NOS1AP NA 0 NA 1.324 1 NA NA NA NA NA LTS-003 chr1 162039628 162333990 294363 * c(MIR4654, MIR556, NOS1AP) 0.326 1 NA 1.26706566271785 87 0.262065598098063 3 3 0 -5.77690032737265 LTS-003 chr1 162333991 163116878 782888 * c(SH2D1B, UHMK1, C1orf111, CCDC190, C1orf226, DDR2, HSD17B7, RGS4, UAP1, RGS5, NOS1AP) 0.356007600362167 37 0.0342253835168706 1.35261585393932 1001 0.344528049463513 3 2 1 -6.73881076125846 LTS-003 chr1 163116879 163172574 55696 * RGS5 0.401 1 NA 1.13124797278184 31 0.18964752818383 2 2 0 -5.78929129820017 LTS-003 chr1 163172575 163325619 153045 * c(NUF2, RGS5) NA 0 NA 1.305368632307 79 0.282183240191751 3 NA NA -5.76625303694954 LTS-003 chr1 164528991 172381599 7852609 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, DNM3OS, MIR1295B, GPA33, SLC19A2, FMO9P, TADA1, METTL11B, FAM78B, DPT, F5, ALDH9A1, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TIPRL, LINC01142, NME7, SFT2D2, ILDR2, FMO6P, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, MYOC, ATP1B1, PBX1, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, NA NA NA NA NA NA NA NA NA LTS-003 SCYL3, POGK, CCDC181, RXRG, XCL1, SELE, SELL, SELP, XCL2, MIR557, TOP1P1, UCK2, LINC00626, MROH9, ANKRD36BP1, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB) 0.450432366524554 150 0.0501307859972092 0.966094018166116 5374 0.261266151610811 2 1 1 -6.7969187454416 LTS-003 NA NA NA NA LTS-003 chr1 172381600 175956239 3574640 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.443560352017914 37 0.0845212182610753 0.9114039989558 2187 0.22850131078795 2 1 1 -6.84968347607691 LTS-003 chr1 175956240 177133759 1177520 * c(ASTN1, MIR488, PAPPA2, RFWD2) 0.377594429123168 9 0.0400513559210061 1.4414879037567 601 0.367226169419308 3 2 1 -6.97515869783502 LTS-003 chr1 177133760 177133927 168 * ASTN1 NA 0 NA 1.027 1 NA NA NA NA NA LTS-003 chr1 177133928 178848222 1714295 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, BRINP2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.46065777613093 19 0.0312313570121235 1.05671590884625 773 0.267931145853092 2 1 1 -7.26044040738415 LTS-003 chr1 178848223 196716667 17868445 * c(GM140, GS1-279B7.1, MIR1278, MIR548F1, MIR3121, LHX4-AS1, MIR4735, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, CFH, MR1, BRINP3, KCNT2, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, IER5, PDC, UCHL5, PLA2G4A, SWT1, NA NA NA NA NA NA NA NA NA LTS-003 C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, TOR3A, RGS18, SOAT1, TROVE2, TPR, CACNA1E, NPHS2, CDC73, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, B3GALT2, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.455738463689181 138 0.0632263940676841 0.957791797322774 8865 0.235352788682021 2 1 1 -6.80220835336626 LTS-003 NA NA NA NA LTS-003 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.002 1 NA NA NA NA NA LTS-003 chr1 196743864 196758807 14944 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.0355973067012951 39 0.0328944043168078 0 NA NA -11.7710453152494 LTS-003 chr1 196758808 196758823 16 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.074 1 NA NA NA NA NA LTS-003 chr1 196758824 196801352 42529 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.0315775128791386 67 0.0322603329471878 0 NA NA -15.1778735438777 LTS-003 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 0.933 1 NA NA NA NA NA LTS-003 chr1 196857130 197410270 553141 * c(CFHR4, F13B, CRB1, ASPM, CFHR2, ZBTB41, CFHR5) 0.451528712739093 17 0.0402504110318801 0.992639413544084 729 0.231244140515276 2 1 1 -6.84747189560961 LTS-003 chr1 197410271 200828006 3417736 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, CAMSAP2, CRB1, ZNF281, NR5A2, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, DDX59, KIF14) 0.457731243940941 25 0.0421826188534251 0.909897504444729 1587 0.238332016387309 2 1 1 -7.01477513660091 LTS-003 chr1 200828007 204219850 3391844 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, KIF21B, CAMSAP2, FMOD, PHLDA3, TMEM9, LMOD1, OPTC, LINC00303, GPR25, UBE2T, RPS10P7, KISS1, LAD1, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PKP1, LAX1, ETNK2, PRELP, IPO9, C1orf106, PTPN7, RABIF, KLHL12, LGR6, REN, RNPEP, MGAT4EP, ASCL5, SNRPE, NA NA NA NA NA NA NA NA NA LTS-003 SNORA77, TNNI1, TNNT2, LINC01136, CACNA1S, BTG2, LINC00260, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A) 0.449083617559204 142 0.045792675549182 0.979567899591372 5666 0.252837489241354 2 1 1 -6.80739230455101 LTS-003 NA NA NA NA LTS-003 chr1 204219851 204234222 14372 * PLEKHA6 0.065 1 NA 1.02861054633299 55 0.418562662401823 2 2 0 -5.76464357275845 LTS-003 chr1 204234223 204590669 356447 * c(LRRN2, LINC00628, PLEKHA6, MDM4, PIK3C2B, PPP1R15B) 0.219236607216468 5 0.260265249313081 0.97173865693474 649 0.226078563024135 2 2 0 -6.88904135956643 LTS-003 chr1 204590670 204945934 355265 * c(LRRN2, NFASC, MDM4) 0.443342819705126 4 0.0476261482801202 1.12025566692044 134 0.229916912897886 2 1 1 -6.84883692010845 LTS-003 chr1 204945935 204946764 830 * NFASC 0.492 1 NA 1.15852725435326 11 0.105656131775767 3 3 0 -5.7655408778621 LTS-003 chr1 204946765 204991971 45207 * NFASC 0.41673034579436 10 0.0435023626433732 1.21570388125432 229 0.243977693873104 2 1 1 -6.85494495336214 LTS-003 chr1 204991972 205022196 30225 * CNTN2 NA 0 NA 1.365 1 NA NA NA NA NA LTS-003 chr1 205022197 205689795 667599 * c(MFSD4A, ELK4, DSTYK, LEMD1-AS1, LOC284578, TMEM81, MIR135B, CDK18, KLHDC8A, RBBP5, NUCKS1, CNTN2, NUAK2, SLC45A3, LEMD1, TMCC2) 0.404053283348961 26 0.0514882660269458 1.47071217391109 1446 0.368801551923773 4 2 2 -7.02544842034992 LTS-003 chr1 205689796 205693041 3246 * NUCKS1 NA 0 NA 0.869 1 NA NA NA NA NA LTS-003 chr1 205693042 211922355 6229314 * c(MIR4260, IL24, SLC26A9, CR1, CR1L, CR2, C1orf74, LOC148696, PM20D1, CTSE, CD55, EIF2D, SRGAP2, SLC41A1, SYT14, DIEXF, LOC284581, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, C1orf186, NEK2, G0S2, IL20, PFKFB2, PIGR, PLXNA2, AVPR1B, YOD1, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, MIR205HG, NUCKS1, SRGAP2C, TRAF5, C4BPA, C4BPB, FAM72A, SLC30A1, C1orf116, TRAF3IP3, RASSF5, NA NA NA NA NA NA NA NA NA LTS-003 FCAMR, DYRK3, LINC00467, RAB29, FCMR, MAPKAPK2, CD34, IKBKE, LPGAT1) 0.454134422102991 134 0.0342157597233213 0.972778619098415 4979 0.226933537820804 2 1 1 -6.93992855093596 LTS-003 NA NA NA NA LTS-003 chr1 211922356 211922603 248 * LPGAT1 0.41 1 NA 1.33602868068651 5 0.334910734375595 3 3 0 -5.76441050605781 LTS-003 chr1 211922604 212763327 840724 * c(MIR3122, INTS7, NENF, ATF3, DTL, TMEM206, PPP2R5A, SNORA16B, LPGAT1) 0.345208271981873 3 0.24834720319209 0.907963938096173 499 0.249444761983182 2 1 1 -6.83453770751987 LTS-003 chr1 212763328 212763354 27 * ATF3 0.348 1 NA 2.784 1 NA NA NA NA NA LTS-003 chr1 212763355 215410406 2647052 * c(LINC00538, CENPF, TATDN3, SPATA45, FAM71A, NSL1, RPS6KC1, FLVCR1, KCNK2, ATF3, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, VASH2, ANGEL2) 0.36866430979807 47 0.0554025884639936 1.2609480223209 1456 0.311824681654684 3 2 1 -6.87218909228643 LTS-003 chr1 215410407 215740742 330336 * c(KCNK2, KCTD3) NA 0 NA 0.477 1 NA NA NA NA NA LTS-003 chr1 215740743 217671771 1931029 * c(ESRRG, KCTD3, GPATCH2, USH2A) 0.425002970926866 26 0.0953394018151023 1.04561003315151 916 0.263641499546726 2 1 1 -6.85756401795411 LTS-003 chr1 217671772 217782273 110502 * GPATCH2 0.438 1 NA 1.04240985334153 23 0.15008864310971 2 2 0 -5.78422997926758 LTS-003 chr1 217782274 219783811 2001538 * c(LINC00210, LYPLAL1, SPATA17, RRP15, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.467034997644116 6 0.0383792478647858 1.03729339615316 502 0.297079208479634 2 1 1 -7.22000049549905 LTS-003 chr1 219783812 223567808 3783997 * c(BPNT1, DUSP10, BROX, CCDC185, EPRS, RAB3GAP2, RNU5F-1, HLX, MIA3, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, C1orf115, HHIPL2, DISP1, TAF1A) 0.450870888139333 30 0.050294534791417 0.962624253089986 2094 0.218773100947832 2 1 1 -6.79753816400734 LTS-003 chr1 223567809 223711517 143709 * CCDC185 NA 0 NA 0.967687575670891 25 0.133380945665663 2 NA NA -5.76470620210769 LTS-003 chr1 223711518 223712725 1208 * character(0) NA 0 NA 1.28 1 NA NA NA NA NA LTS-003 chr1 223712726 223714950 2225 * character(0) 0.388 1 NA 1.19121848353645 5 0.0866717947200818 3 3 0 -5.76747985757308 LTS-003 chr1 223714951 223853099 138149 * CAPN8 0.35024238882194 15 0.045207142292847 1.30813279973102 169 0.606070092912731 3 2 1 -6.73508171790814 LTS-003 chr1 223853100 223889410 36311 * c(CAPN8, CAPN2) NA 0 NA 1.38504345557065 13 0.147384070043421 3 NA NA -5.76478230422015 LTS-003 chr1 223889411 223899930 10520 * CAPN2 NA 0 NA 0.928 1 NA NA NA NA NA LTS-003 chr1 223899931 223938565 38635 * CAPN2 0.474 1 NA 0.936738072344125 47 0.188492488262423 2 2 0 -5.76480781295386 LTS-003 chr1 223938566 227262095 3323530 * c(MIR320B2, MIR4742, LEFTY1, DNAH14, PARP1, CNIH3, SDE2, EPHX1, FBXO28, LIN9, CNIH4, PYCR2, H3F3A, ITPKB, STUM, LBR, H3F3AP4, NVL, ENAH, PSEN2, COQ8A, ACBD3, SRP9, LEFTY2, TP53BP2, WDR26, CAPN2, MIXL1, CDC42BPA, DEGS1, TMEM63A) 0.445928678494976 50 0.0399954130022993 0.931517968598173 3325 0.22089136021402 2 1 1 -6.82029313208162 LTS-003 chr1 227262096 227268519 6424 * CDC42BPA NA 0 NA 1.083 1 NA NA NA NA NA LTS-003 chr1 227268520 227935914 667395 * c(NA, SNAP47, ZNF678, ZNF847P, JMJD4, CDC42BPA) 0.350505089975673 14 0.0646552990272854 1.18611618472629 244 0.326984014347085 3 2 1 -6.80197061241646 LTS-003 chr1 227935915 227946642 10728 * SNAP47 NA 0 NA 0.931 1 NA NA NA NA NA LTS-003 chr1 227946643 231047143 3100501 * c(MIR3620, MIR4666A, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, MRPL55, HIST3H2BB, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, GUK1, PRSS38, ARF1, TRIM17, NUP133, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, WNT9A, C1orf35, TTC13, PGBD5, TRIM11, HIST3H3, OBSCN, C1orf198, WNT3A, HIST3H2A, URB2) 0.43943347156851 124 0.0797266158053141 0.96036656656653 3319 0.218629647424247 2 1 1 -6.73548788005684 LTS-003 chr1 231047144 231060736 13593 * TTC13 0.462 1 NA 0.96354038769223 35 0.274758283379618 2 2 0 -5.76441147399342 LTS-003 chr1 231060737 234744902 3684166 * c(LINC00582, MIR1182, TSNAX-DISC1, LINC01354, MIR4671, MIR4427, C1orf131, SLC35F3, EXOC8, LOC149373, DISC2, DISC1, IRF2BP2, FAM89A, KCNK1, COA6, TRIM67, EGLN1, MAP10, SIPA1L2, SNRPD2P2, ARV1, TARBP1, TSNAX, TTC13, PCNX2, SPRTN, NTPCR, GNPAT, MLK4) 0.438694996235252 39 0.0835287129311868 0.98074166814242 2494 0.246277195799808 2 1 1 -6.75102649518986 LTS-003 chr1 234744903 234744905 3 * IRF2BP2 NA 0 NA 0.545 1 NA NA NA NA NA LTS-003 chr1 234744906 236894604 2149699 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01132, MIR4753, LYST, EDARADD, B3GALNT2, RBM34, GNG4, IRF2BP2, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.425333490628423 33 0.13613446588954 0.887720110181367 1859 0.218070493769692 2 1 1 -6.89804267327066 LTS-003 chr1 236894605 236894647 43 * ACTN2 0.434 1 NA 1.609 1 NA NA NA NA NA LTS-003 chr1 236894648 245180697 8286050 * c(AKT3, LOC100130331, MIR3123, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, ADSS, PLD5, C1orf100, FH, OPN3, C1orf101, NA, HNRNPU, LOC339529, LINC01139, MAP1LC3C, MTR, DESI2, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, LINC01347, EFCAB2, KMO, ACTN2, EXO1, CEP170) 0.445759955070658 59 0.0803542347307122 0.983936773858256 3514 0.244560295443619 2 1 1 -6.79450061858114 LTS-003 chr1 245180698 245222673 41976 * EFCAB2 NA 0 NA 1.259 1 NA NA NA NA NA LTS-003 chr1 245222674 245533861 311188 * c(KIF26B, EFCAB2) 0.355 1 NA 1.41257480496979 157 0.357278235478953 3 3 0 -5.76662801423417 LTS-003 chr1 245533862 247201146 1667285 * c(ZNF670-ZNF695, LINC01341, CNST, LOC255654, AHCTF1, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF670) 0.440642426147389 27 0.0942681663101982 0.966139541266829 950 0.31170194340043 2 1 1 -6.73611544223452 LTS-003 chr1 247201147 247201251 105 * c(ZNF670-ZNF695, ZNF670) NA 0 NA 1.078 1 NA NA NA NA NA LTS-003 chr1 247201252 247875689 674438 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, OR6F1, C1orf229, OR2W5, OR13G1, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, ZNF496, ZNF670) 0.43131283940781 26 0.0416125166081257 1.19099747788352 718 0.345978534345557 2 1 1 -6.88914633765408 LTS-003 chr1 247875690 247902578 26889 * OR6F1 0.363 1 NA 1.23936074880142 45 0.237474000703448 3 3 0 -5.76682374751291 LTS-003 chr1 247902579 248570440 667862 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2L5) 0.391455692685876 20 0.144948802213602 1.21413038672524 543 1.51760974562417 3 2 1 -6.77788588873969 LTS-003 chr1 248570441 248570462 22 * character(0) NA 0 NA 0.97 1 NA NA NA NA NA LTS-003 chr1 248570463 248813827 243365 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.29224019119648 18 0.128029867838811 1.05551815357888 239 0.622721087989151 4 3 1 -6.84245410342551 LTS-003 chr1 248813828 248814052 225 * OR2T27 0.496 1 NA 0.995511680864984 8 1.84918483488575 2 2 0 -5.76441018605358 LTS-003 chr1 248814053 249208772 394720 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.463689040967216 10 0.026741769242558 0.924801945990166 272 0.211889096850242 2 1 1 -7.38829970528948 LTS-003 chr1 249208773 249214134 5362 * PGBD2 NA 0 NA 0.85529668229924 63 0.1558675997549 2 NA NA -5.76618028492111 LTS-003 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.486 1 NA 1.00823836848063 85 0.253741171418493 2 2 0 -5.76840331553066 LTS-003 chr2 218387 9552600 9334214 * c(LINC01304, RNASEH1-AS1, LOC100506274, CMPK2, MBOAT2, TMEM18, LINC01105, MYT1L, RNASEH1, SH3YL1, FAM150B, LINC00298, LINC00299, ID2, LINC01115, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, ASAP2, RSAD2, ITGB1BP1, RNF144A) 0.402158940293476 67 0.0522450000204521 1.10877229886151 2777 0.247348763704567 2 1 1 -8.42171893641414 LTS-003 chr2 9552601 11702711 2150111 * c(SNORA80B, MIR4261, MIR4429, LINC00570, PDIA6, YWHAQ, C2orf50, PQLC3, E2F6, CYS1, ATP6V1C2, IAH1, FLJ33534, GRHL1, HPCAL1, C2orf48, KCNF1, ODC1, CPSF3, RRM2, ADAM17, NOL10, KLF11, TAF1B, ITGB1BP1, ROCK2, GREB1) 0.425323392092851 47 0.0678087791313894 1.03965437374836 1852 0.285189712351672 2 1 1 -6.84233236685908 LTS-003 chr2 11702712 11706582 3871 * GREB1 NA 0 NA 1.857 1 NA NA NA NA NA LTS-003 chr2 11706583 11977143 270561 * c(MIR4262, LPIN1, NTSR2, GREB1) 0.323324796815553 8 0.0514973993795526 1.4250737816418 489 0.29017945354033 3 2 1 -6.9261767098841 LTS-003 chr2 11977144 12339257 362114 * character(0) NA 0 NA 1.129 1 NA NA NA NA NA LTS-003 chr2 12339258 16769503 4430246 * c(MIR3125, LOC100506474, MYCNOS, FAM84A, DDX1, TRIB2, MYCN, NBAS, FAM49A) 0.408839913331815 24 0.0432045815807215 1.11038133940933 851 0.261120339620114 2 1 1 -7.66284589970489 LTS-003 chr2 17691782 18770807 1079026 * c(NT5C1B-RDH14, MSGN1, GEN1, KCNS3, RDH14, RAD51AP2, VSNL1, SMC6, NT5C1B) 0.468885934666032 20 0.0209095168460881 1.25995679371599 626 0.282019697968373 2 1 1 -8.58829662894593 LTS-003 chr2 18770808 27425590 8654783 * c(OST4, MIR1301, NT5C1B-RDH14, MIR4757, PREB, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, OSR1, TTC32, TCF23, GAREM2, GDF7, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, MAPRE3, EFR3B, PUM2, HADHA, HADHB, APOB, C2orf70, PRR30, PFN4, FAM228B, KCNK3, KHK, KIF3C, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, TMEM214, SLC35F6, ASXL2, DPYSL5, WDR35, AGBL5, LDAH, SDC1, NA NA NA NA NA NA NA NA NA LTS-003 HS1BP3, LOC645949, FAM228A, DNAJC27-AS1, CENPO, WDCP, ABHD1, SELENOI, NCOA1, SLC5A6, DRC1, NT5C1B, OTOF, TP53I3, LAPTM4A) 0.407219751468501 123 0.0627630681126444 1.10449608649271 6443 0.249696143038216 2 1 1 -8.14714214110885 LTS-003 NA NA NA NA LTS-003 chr2 27425591 27704075 278485 * c(GTF3C2-AS1, ZNF513, KRTCAP3, FTH1P3, IFT172, DNAJC5G, GTF3C2, NRBP1, MPV17, ATRAID, PPM1G, TRIM54, UCN, SLC30A3, CAD, SLC5A6, EIF2B4, SNX17) 0 1 NA 1.11865964795298 1377 0.229987167702291 2 2 0 -5.83726661451818 LTS-003 chr2 27704076 28636740 932665 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, SLC4A1AP, FOSL2, IFT172, GCKR, RBKS, FNDC4, CCDC121, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.260324613819234 9 0.190925887308255 1.07208848019366 1145 0.278440820196659 3 2 1 -7.25005005054614 LTS-003 chr2 28636741 28639641 2901 * FOSL2 0.399 1 NA 1.06320101738477 57 0.229384057291147 2 2 0 -5.76475380314241 LTS-003 chr2 28639642 30865505 2225864 * c(PLB1, FAM179A, WDR43, ALK, SPDYA, LCLAT1, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, SNORD92, CLIP4, LBH) 0.409958089924471 43 0.0435254791026876 1.09424792419361 1567 0.231591632465299 2 1 1 -7.3134583083435 LTS-003 chr2 30865506 30865545 40 * LCLAT1 NA 0 NA 0.947 1 NA NA NA NA NA LTS-003 chr2 30865546 30866980 1435 * LCLAT1 NA 0 NA 0.528691350246758 39 0.437234217706715 1 NA NA -5.764426632541 LTS-003 chr2 30866981 30866992 12 * LCLAT1 0.369 1 NA 1.883 1 NA NA NA NA NA LTS-003 chr2 30866993 31628853 761861 * c(LCLAT1, EHD3, CAPN14, XDH, GALNT14, CAPN13) 0.378990804216119 28 0.0468030179237673 1.20242455336256 677 0.417114731641483 3 2 1 -6.95597401960528 LTS-003 chr2 31628854 31637401 8548 * XDH NA 0 NA 0.859 1 NA NA NA NA NA LTS-003 chr2 31637402 32641215 1003814 * c(MEMO1, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, XDH, YIPF4, DPY30) 0.405598725515553 6 0.0384729342092161 1.04832398845423 679 0.240622592870822 2 1 1 -7.12953024933176 LTS-003 chr2 32641216 32654205 12990 * BIRC6 NA 0 NA 1.428 1 NA NA NA NA NA LTS-003 chr2 32654206 38156873 5502668 * c(LOC100271832, LOC100288911, CEBPZOS, MIR4765, CEBPZ, CDC42EP3, MYADML, RMDN2, PRKD3, GPATCH11, RASGRP3, QPCT, FAM98A, LINC00486, SULT6B1, LTBP1, CRIM1, VIT, HEATR5B, NDUFAF7, TTC27, EIF2AK2, BIRC6, STRN, MIR558, FEZ2) 0.361634004561735 35 0.0858317682270078 1.17826862533185 2626 0.287347645161496 3 2 1 -7.45746371721884 LTS-003 chr2 38156874 38157525 652 * RMDN2 NA 0 NA 1.327 1 NA NA NA NA NA LTS-003 chr2 38157526 38302070 144545 * c(RMDN2-AS1, RMDN2, CYP1B1) 0.447260822671259 9 0.0356456324268642 1.43581535598941 233 0.383799239043263 4 2 2 -6.83485948563962 LTS-003 chr2 38302071 40339913 2037843 * c(SLC8A1-AS1, ARHGEF33, GALM, TMEM178A, CYP1B1, CYP1B1-AS1, CDKL4, LOC375196, ATL2, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.39552267329338 19 0.105863367750979 1.01296192971404 1379 0.24644661100466 2 1 1 -6.86975980482486 LTS-003 chr2 40339914 64686708 24346795 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3682, MIR4432, MIR548AD, MIR5192, LRPPRC, CCT4, B3GNT2, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, LINC00309, OXER1, KCNG3, TMEM17, EPAS1, EFEMP1, PSME4, EHBP1, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, LGALSL, MSH6, FOXN2, LOC339803, C2orf74, PRORSD1P, NA NA NA NA NA NA NA NA NA LTS-003 LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, MIR216A, MIR217, EPCAM, MDH1, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, DYNC2LI1, PEX13, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, UGP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 VRK2, XPO1, CAMKMT, FBXO11, CALM2, FAM161A, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, ACYP2) 0.393350930446941 208 0.078390277785226 1.09025798467973 10277 0.508170731468031 2 1 1 -7.6901315560105 LTS-003 NA NA NA NA LTS-003 chr2 64686709 64864100 177392 * c(MIR4434, LGALSL, LOC339807, AFTPH, SERTAD2) 0.3062724642403 2 0.0268700576850888 1.36455146314905 255 0.32854519448644 7 5 2 -7.33243550587113 LTS-003 chr2 64864101 65131474 267374 * c(LOC400958, SERTAD2) NA 0 NA 0.94 1 NA NA NA NA NA LTS-003 chr2 65131475 65496187 364713 * c(ACTR2, CEP68, LOC400958, RAB1A, SLC1A4) 0.389701664385866 6 0.0358073549241866 1.03124284507292 330 0.201903785552042 2 1 1 -7.57196205731524 LTS-003 chr2 65496188 65497634 1447 * ACTR2 0.424 1 NA 0.919754364843372 25 0.325018845607451 2 2 0 -5.76442531104971 LTS-003 chr2 65497635 66585479 1087845 * c(MIR4778, ACTR2, SPRED2) 0.420966276655865 2 0.051618795026618 1.08784790267559 143 0.215344917441626 2 1 1 -6.98477236588454 LTS-003 chr2 66585480 66662289 76810 * MEIS1-AS3 NA 0 NA 1.667 1 NA NA NA NA NA LTS-003 chr2 66662290 66795959 133670 * MEIS1 0.441178221429427 2 0.0997020561473032 1.50355724406153 107 0.404468499248269 4 2 2 -6.74773756488992 LTS-003 chr2 66795960 66796169 210 * MEIS1 NA 0 NA 0.923 1 NA NA NA NA NA LTS-003 chr2 66796170 70781005 3984836 * c(SNORA36C, LOC100133985, MIR3126, C1D, PROKR1, SNRNP27, WDR92, ASPRV1, GKN2, APLF, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, MEIS1, PCBP1, PCYOX1, PLEK, ETAA1, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, LOC644838, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.436211966587639 34 0.112033007772975 0.891238037547539 2641 0.32178603642703 2 1 1 -6.85863301592255 LTS-003 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.008 1 NA NA NA NA NA LTS-003 chr2 70781031 87092840 16311810 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, MPHOSPH10, SMYD5, SEMA4F, CCT7, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, TEX261, MRPL53, ADD2, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, EMX1, EXOC6B, WBP1, VAX2, POLR1A, RAB11FIP5, GGCX, ZNF638, HTRA2, NA NA NA NA NA NA NA NA NA LTS-003 SH2D6, LOC284950, HK2, TLX2, FIGLA, NOTO, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, PAIP2B, MAT2A, CD207, REG3A, TPRKB, RNF181, MRPL35, CHMP3, ATP6V1B1, RETSAT, AUP1, PTCD3, MOB1A, NAGK, KDM3A, CYP26B1, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, SPR, TACR1, SNORD94, GCFC2, TGFA, ACTG2, ALMS1, MOGS, RNF103, OR7E91P, ANKRD53, LRRTM4, CAPG, DYSF, TCF7L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 INO80B, WDR54, EVA1A, ELMOD3, PRADC1, DUSP11, MCEE, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, SFXN5, MRPL19) 0.449473171976411 155 0.0666809227181617 0.933515006082052 9595 0.231451051567017 2 1 1 -6.90506503151625 LTS-003 NA NA NA NA LTS-003 chr2 87092841 87424656 331816 * c(ANAPC1P1, LOC285074, RMND5A) 0.227 1 NA 0.681490634992971 120 0.252008552025755 1 1 0 -5.87935265254028 LTS-003 chr2 87424657 87424671 15 * RMND5A NA 0 NA 0.847 1 NA NA NA NA NA LTS-003 chr2 87424672 91927348 4502677 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.426721170400469 30 0.0561244921642027 0.980537317824172 943 0.520235062704395 2 1 1 -6.74844297346406 LTS-003 chr2 91927349 91933207 5859 * character(0) 0.213 1 NA 1.02069607235283 9 0.349848935653344 2 2 0 -5.76451750372413 LTS-003 chr2 91933208 91944161 10954 * character(0) 0.274780798972535 15 0.0558434887708069 1.0097476011024 54 0.426701122167472 4 3 1 -6.74454385413657 LTS-003 chr2 91944162 91955470 11309 * character(0) NA 0 NA 0.997324847311567 7 0.258441114228773 2 NA NA -5.76455668516655 LTS-003 chr2 95537183 95542421 5239 * c(TEKT4, LOC442028) 0.448 1 NA 1.26544757385454 43 0.190076597604257 3 3 0 -5.76484912409109 LTS-003 chr2 95542422 98994134 3451713 * c(MIR3127, ACTR1B, ARID5A, CNGA3, TRIM43, COX5B, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, KCNIP3, ANKRD36, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.382877312536846 78 0.0807770536782099 1.21325724567797 3656 0.294362070472063 3 2 1 -7.1072196688828 LTS-003 chr2 98994135 99172244 178110 * c(CNGA3, INPP4A) 0.484 1 NA 1.24656711305397 173 0.285845725995278 3 3 0 -5.77408440257102 LTS-003 chr2 99172245 99176063 3819 * INPP4A NA 0 NA 1.31128828629611 5 0.201099975136746 3 NA NA -5.76448134998172 LTS-003 chr2 99176064 99179852 3789 * INPP4A NA 0 NA 0.958 1 NA NA NA NA NA LTS-003 chr2 99179853 99449434 269582 * c(MGAT4A, UNC50, KIAA1211L, INPP4A, COA5) 0.464881612174188 16 0.0334325190994237 0.888492042751044 515 0.209018764335183 2 1 1 -7.21853777345689 LTS-003 chr2 99449435 99454504 5070 * KIAA1211L NA 0 NA 1.147 1 NA NA NA NA NA LTS-003 chr2 99454505 100210177 755673 * c(TXNDC9, LYG1, MITD1, C2orf15, LYG2, KIAA1211L, AFF3, MRPL30, REV1, LIPT1, TSGA10, EIF5B) 0.405043421435701 11 0.0523375408461095 1.20996649352575 781 0.298995355725352 2 1 1 -7.17493041768899 LTS-003 chr2 100210178 106510740 6300563 * c(LOC100287010, LINC01158, MIR4772, MIR5696, TBC1D8, GPR45, NMS, TMEM182, LINC01102, LONRF2, CREG2, FHL2, RNF149, LINC01114, LOC285000, IL1R1, SLC9A4, AFF3, NPAS2, POU3F3, CNOT11, RPL31, MRPS9, SLC9A2, SNORD89, RFX8, IL1R2, PDCL3, C2orf49, NCK2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10) 0.461321774132382 67 0.0302399943643968 0.942004216287332 3100 0.310986221654124 2 1 1 -7.19074764822855 LTS-003 chr2 106510741 106682161 171421 * C2orf40 NA 0 NA 1.49 1 NA NA NA NA NA LTS-003 chr2 106682162 106761796 79635 * c(UXS1, C2orf40) 0.430429882059499 2 0.0325269119345812 1.24947375511854 107 0.195929911104058 2 1 1 -6.826773551283 LTS-003 chr2 106761797 106774496 12700 * UXS1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-003 chr2 106774497 107123363 348867 * c(PLGLA, RGPD3, UXS1) 0.444054874138614 5 0.0162265215003093 0.914243419233594 63 0.362582610605595 2 1 1 -6.94491596340268 LTS-003 chr2 107123364 107124147 784 * character(0) NA 0 NA 0.83774801702982 15 0.141538922797465 2 NA NA -5.76484625381651 LTS-003 chr2 107124148 107418075 293928 * ST6GAL2 NA 0 NA 1.175 1 NA NA NA NA NA LTS-003 chr2 107418076 107419088 1013 * ST6GAL2 0.319 1 NA 1.36207647954433 23 0.351262325540149 3 3 0 -5.76441016647117 LTS-003 chr2 107419089 110849313 3430225 * c(SH3RF3-AS1, MIR4265, MIR4267, MIR4266, EDAR, SEPT10, SULT1C2P1, CCDC138, SULT1C4, RGPD4, SH3RF3, LIMS1, SULT1C3, RANBP2, SLC5A7, SOWAHC, SULT1C2, RGPD4-AS1, MALL, ST6GAL2, GCC2) 0.367828125379489 42 0.0488267219920384 1.26553803897727 1367 0.300670215488517 3 2 1 -6.90284408251741 LTS-003 chr2 110849314 110855124 5811 * MALL NA 0 NA 0.687 1 NA NA NA NA NA LTS-003 chr2 110855125 110880168 25044 * MALL 0.203138284913007 2 0.260922402257836 0.964298372479105 24 0.355436565611802 1 1 0 -6.79686663922501 LTS-003 chr2 110880169 110922703 42535 * NPHP1 0.495 1 NA 0.908432842502304 91 0.160341251622647 2 2 0 -5.7674521568718 LTS-003 chr2 110922704 112540085 1617382 * c(BCL2L11, LOC100507334, LINC01106, LINC00116, NPHP1, MIR4435-2HG, ACOXL, ANAPC1, BUB1) 0.444134300358769 6 0.0858339482178623 0.919027637105246 527 0.35540809415611 2 1 1 -6.75553289816132 LTS-003 chr2 112540086 112541455 1370 * ANAPC1 NA 0 NA 0.466 1 NA NA NA NA NA LTS-003 chr2 112541456 112641231 99776 * ANAPC1 0.454462560176966 2 0.0410121933088197 0.738963341323212 101 0.29660514473149 2 1 1 -6.92051694195524 LTS-003 chr2 112641232 112656136 14905 * ANAPC1 NA 0 NA 1.234 1 NA NA NA NA NA LTS-003 chr2 112656137 131907378 19251242 * c(RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, LOC100499194, MIR4783, MIR4782, ACTR3, MERTK, MAP3K2, RABL2A, TUBA3E, RPL23AP7, CNTNAP5, FBLN7, FAM168B, C2orf76, TMEM37, TTL, CKAP2L, CBWD2, DBI, C1QL2, FOXD4L1, CFAP221, EN1, AMER3, ERCC3, CLASP1, PSD4, NIFK-AS1, PTPN18, IL36RN, IL36B, IL37, IL36A, GLI2, BIN1, GPR17, MED15P9, TFCP2L1, GYPC, CYP27C1, GPR148, IL1A, IL1B, IL1RN, INHBB, WASH2P, ZC3H6, DPP10-AS1, NA NA NA NA NA NA NA NA NA LTS-003 LOC389033, FLJ42351, LINC01191, FAR2P1, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, SMPD4, IWS1, LIMS2, CFC1, PROC, IL36G, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, FAM138B, PAX8-AS1, SLC20A1, TSN, RGPD8, POTEF, PAX8, TMEM185B, SAP130, MZT2B, SLC35F5, TMEM177, AMMECR1L, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, ZC3H8, IL1F10, DDX11L2, SFT2D3, TMEM87B, LINC01101, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MARCO, DDX18, CCDC74B, IMP4, HS6ST1) 0.442397362892428 161 0.0797459207664065 0.946723347647827 8677 0.406740345842157 2 1 1 -6.75298391929707 LTS-003 NA NA NA NA LTS-003 chr2 131907379 132290233 382855 * c(MIR4784, TUBA3D, LOC150776, WTH3DI, LINC01120, NOC2LP2, LOC440910, POTEE, PLEKHB2, MZT2A, CCDC74A) 0.42865319401762 33 0.0608705002692626 0.839201184488822 385 0.244127216360358 2 1 1 -6.80731928017627 LTS-003 chr2 132290234 135988459 3698226 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, RAB3GAP1, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, MAP3K19, TMEM163, ZRANB3, CCNT2, CCDC74A) 0.445930599873712 46 0.0455080233940864 0.992917896150571 1347 0.223328309232975 2 1 1 -6.82143598631153 LTS-003 chr2 135988460 136023096 34637 * ZRANB3 NA 0 NA 0.891 1 NA NA NA NA NA LTS-003 chr2 136023097 137852726 1829630 * c(LOC100507600, DARS, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, THSD7B, ZRANB3) 0.463926386234475 17 0.0278056543128319 0.889565309712981 772 0.221145602197792 2 1 1 -7.4738055552278 LTS-003 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.065 1 NA NA NA NA NA LTS-003 chr2 137872656 143643113 5770458 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B, KYNU) 0.441919202248682 22 0.106300328034582 1.04296252780704 993 0.277072898351897 2 1 1 -7.02987184671744 LTS-003 chr2 143643114 143676268 33155 * KYNU NA 0 NA 0.955 1 NA NA NA NA NA LTS-003 chr2 143676269 148602462 4926194 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.419168006761699 16 0.11675665577031 0.915715585751015 466 0.254392096606439 2 1 1 -6.84397952550953 LTS-003 chr2 148602463 149799282 1196820 * c(EPC2, KIF5C, ORC4, MBD5, ACVR2A) 0.419574567276701 5 0.0296192504969319 1.29367535653838 626 0.305417071946579 2 1 1 -7.49480487869758 LTS-003 chr2 149799283 149803325 4043 * KIF5C NA 0 NA 0.786 1 NA NA NA NA NA LTS-003 chr2 149803326 155308465 5505140 * c(LOC100144595, MIR4773-1, MIR4773-2, STAM2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, ARL5A, MMADHC, RBM43, KIF5C, RND3, NEB, RIF1, PRPF40A, RPRM, TNFAIP6, CACNB4, NMI) 0.449643022191719 52 0.0695233068551722 0.960572044079771 2799 0.238322393426207 2 1 1 -6.76200342847818 LTS-003 chr2 155308466 155713149 404684 * c(LOC100144595, GALNT13, KCNJ3) NA 0 NA 1.02747341075623 105 0.182620374271057 2 NA NA -5.79765824028047 LTS-003 chr2 155713150 155713153 4 * KCNJ3 NA 0 NA 1.234 1 NA NA NA NA NA LTS-003 chr2 155713154 159028343 3315190 * c(GALNT5, ACVR1C, CCDC148, UPP2, GPD2, KCNJ3, NR4A2, CCDC148-AS1, ERMN, ACVR1, CYTIP) 0.346 1 NA 1.21455883518845 843 0.262428490418701 3 3 0 -6.10695326830608 LTS-003 chr2 159028344 159313307 284964 * c(CCDC148, CCDC148-AS1) 0.348 1 NA 1.25501008535992 86 0.365190733105083 3 3 0 -5.77246624744842 LTS-003 chr2 159313308 159389598 76291 * PKP4 NA 0 NA 1.767 1 NA NA NA NA NA LTS-003 chr2 159389599 159652074 262476 * c(PKP4, DAPL1) 0.267533001129418 2 0.00353553390593274 1.73083027690117 179 0.33241253156741 4 3 1 -7.99061021775627 LTS-003 chr2 159652075 159660795 8721 * DAPL1 NA 0 NA 1.195 1 NA NA NA NA NA LTS-003 chr2 159660796 164468276 4807481 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, WDSUB1, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, BAZ2B, ITGB6, LY75, FIGN, SLC4A10, RBMS1, IFIH1, MARCH7, TANC1, KCNH7, DAPL1, CD302) 0.339340183643575 43 0.0919826648408777 1.26304589521447 2657 0.310895585305161 3 2 1 -6.9003200351411 LTS-003 chr2 164468277 164591381 123105 * FIGN NA 0 NA 0.949 1 NA NA NA NA NA LTS-003 chr2 164591382 165537814 946433 * c(GRB14, FIGN) 0.363310713709195 3 0.279695072057649 0.964349587554351 113 0.400864956879001 2 1 1 -6.77153531697642 LTS-003 chr2 165537815 165539661 1847 * character(0) 0.408 1 NA 1.05131714714889 36 0.167332714379428 2 2 0 -5.76473557219804 LTS-003 chr2 165539662 170366620 4826959 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.450827471554481 53 0.0416985954105921 0.969492475518979 3470 0.670494181098106 2 1 1 -6.8260952152001 LTS-003 chr2 170366621 170681484 314864 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.394163074567961 3 0.0434856298103178 0.831201940618248 618 0.230477108004175 2 1 1 -7.27878076449178 LTS-003 chr2 170681485 170684291 2807 * UBR3 NA 0 NA 1.036 1 NA NA NA NA NA LTS-003 chr2 170684292 176974104 6289813 * c(MIR933, SP9, NA, RAPGEF4, CHN1, CHRNA1, UBR3, ATF2, MYO3B, GPR155, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, SP5, LINC01124, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, CIR1, TLK1) 0.448886814906446 119 0.0832036085669624 0.919286678113296 4279 0.232331359299791 2 1 1 -6.88077170671284 LTS-003 chr2 176974105 176997458 23354 * c(HOXD8, HOXD9, HOXD10, HOXD11) NA 0 NA 0.958551729371105 179 0.227740937041674 2 NA NA -5.76441088787432 LTS-003 chr2 176997459 177014999 17541 * HOXD-AS2 NA 0 NA 1.126 1 NA NA NA NA NA LTS-003 chr2 177015000 177017871 2872 * c(HOXD4, MIR10B) 0.213 1 NA 1.33229273258236 34 0.216244942652577 3 3 0 -5.76442423746974 LTS-003 chr2 177017872 179366003 2348132 * c(LOC100130691, MIR1246, MIR548N, MIR3128, MTX2, OSBPL6, RBM45, TTC30B, HNRNPA3, HOXD1, HOXD3, HOXD4, LINC01116, HAGLR, NFE2L2, DFNB59, PDE11A, FKBP7, PLEKHA3, AGPS, PRKRA, TTC30A) 0.273549421926724 22 0.0850513468543068 1.24372576248597 1309 0.325999716723194 3 2 1 -7.31366579304585 LTS-003 chr2 179366004 179367041 1038 * c(MIR548N, PLEKHA3) NA 0 NA 1.321 1 NA NA NA NA NA LTS-003 chr2 179367042 180348058 981017 * c(MIR548N, TTN-AS1, ZNF385B, CCDC141, PLEKHA3, TTN, SESTD1) 0.321468561582504 19 0.113536505194126 1.33134439076649 3598 0.28128031740445 3 2 1 -6.78105974732832 LTS-003 chr2 180348059 182170459 1822401 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, CWC22) 0.404509947461401 6 0.190082087530625 0.982679495120482 206 0.358925318984463 2 1 1 -6.75232245905091 LTS-003 chr2 182170460 182850882 680423 * c(PPP1R1C, ITGA4, CERKL, NEUROD1, SSFA2) 0.49 1 NA 0.90031891581601 465 0.215889289834702 2 2 0 -5.80045762337755 LTS-003 chr2 182850883 183948321 1097439 * c(NCKAP1, DUSP19, PPP1R1C, FRZB, PDE1A, DNAJC10) 0.412947987805708 14 0.123567928553622 0.916168560576215 569 0.257315846216237 2 1 1 -6.7727326485845 LTS-003 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 0.97 1 NA NA NA NA NA LTS-003 chr2 183951766 189910657 5958892 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.440171437293489 26 0.0946562444605987 1.01043956906098 2104 0.585284390310488 2 1 1 -6.76238790269438 LTS-003 chr2 189910658 196545009 6634352 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.455598200887937 32 0.0325475923246103 0.926494351877502 2548 0.245013046074725 2 1 1 -7.06211768627012 LTS-003 chr2 196545010 196791305 246296 * c(DNAH7, SLC39A10) 0.355101343994776 2 0.0685893577750951 1.21586633067862 349 0.30377233919696 3 2 1 -6.75345460821419 LTS-003 chr2 196791306 196799313 8008 * DNAH7 NA 0 NA 0.785 1 NA NA NA NA NA LTS-003 chr2 196799314 203826688 7027375 * c(SNORD11B, LOC100130452, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, MOB4, SPATS2L, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, C2orf66, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, DNAH7, HECW2, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, SNORD11, SNORD70, SUMO1, C2orf47, NA NA NA NA NA NA NA NA NA LTS-003 CARF, PGAP1, COQ10B, FZD7, CASP8, CASP10, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.450148816498488 119 0.0703398509409462 0.885530272893843 5897 0.220237896157986 2 1 1 -7.28425541057839 LTS-003 NA NA NA NA LTS-003 chr2 203826689 207833848 4007160 * c(GCSHP3, MIR3130-1, MIR3130-2, ABI2, PARD3B, CPO, MDH1B, CTLA4, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, DYTN, NDUFS1, INO80D, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, CARF, ADAM23, NRP2, CD28) 0.4469192488233 38 0.0812185643312792 0.957492871955799 2786 0.225893904900565 2 1 1 -6.74777082467941 LTS-003 chr2 207833849 207939774 105926 * c(CPO, KLF7) 0.047 1 NA 0.897222047586349 39 0.246207692954902 2 2 0 -5.76922438011557 LTS-003 chr2 207939775 210598857 2659083 * c(MIR2355, LOC100507443, IDH1-AS1, MIR4775, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, METTL21A, CCNYL1, PIKFYVE, IDH1, PLEKHM3, C2orf80, MAP2, PTH2R, FZD5, KLF7) 0.415000644580179 7 0.178250225405588 0.939205786022884 1634 0.33920302982919 2 1 1 -6.74681749197732 LTS-003 chr2 210598858 210636694 37837 * character(0) NA 0 NA 1.657 1 NA NA NA NA NA LTS-003 chr2 210636695 211441239 804545 * c(LANCL1, CPS1, KANSL1L, UNC80, ACADL, MYL1, RPE) 0.315642793363148 11 0.163224608216018 1.32006154845982 906 0.287987967363506 3 2 1 -6.76856669130692 LTS-003 chr2 211441240 211442147 908 * CPS1 NA 0 NA 2.123 1 NA NA NA NA NA LTS-003 chr2 211442148 211543850 101703 * c(CPS1, CPS1-IT1) 0.209933261606006 5 0.0334260377550197 1.81470057533728 194 0.464254007268416 5 4 1 -6.82843761801274 LTS-003 chr2 212240529 212569983 329455 * ERBB4 0.313333747885591 12 0.0409940867871837 1.39000608007246 264 0.406299746827858 3 2 1 -7.24071103827528 LTS-003 chr2 212569984 214261444 1691461 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, ERBB4, IKZF2, SPAG16) NA 0 NA 1.32725555414749 289 0.3399195134722 3 NA NA -5.76919693650812 LTS-003 chr2 214261445 214286927 25483 * SPAG16 NA 0 NA 0.93 1 NA NA NA NA NA LTS-003 chr2 214286928 214287064 137 * SPAG16 0.356 1 NA 0.783055386969394 3 0.270847435530288 2 2 0 -5.76445637580299 LTS-003 chr2 214287065 220194170 5907106 * c(LOC100129175, MIR3131, ABCB6, VWC2L-IT1, ARPC2, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, FN1, CFAP65, PNKD, ABCA12, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, VWC2L, MIR153-1, MIR26B, ATIC, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, BARD1, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC11A1, NA NA NA NA NA NA NA NA NA LTS-003 TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, SPAG16, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.455453617797434 106 0.0431856936145982 0.966095416102629 5968 0.405472162496941 2 1 1 -6.87405568398375 LTS-003 NA NA NA NA LTS-003 chr2 220194171 220194366 196 * RESP18 NA 0 NA 1.183 1 NA NA NA NA NA LTS-003 chr2 220194367 222322744 2128378 * c(MIR4268, MIR3132, SPEG, STK11IP, TMEM198, DES, EPHA4, OBSL1, DNPEP, GMPPA, INHA, RESP18, ASIC4, SLC4A3, CHPF) 0.45974695281347 25 0.0327099882808498 1.02847296516432 1401 0.222739164946583 2 1 1 -7.19422696262662 LTS-003 chr2 222322745 222347096 24352 * EPHA4 NA 0 NA 1.457 1 NA NA NA NA NA LTS-003 chr2 222347097 224461948 2114852 * c(FARSB, MOGAT1, SGPP2, CCDC140, EPHA4, ACSL3, KCNE4, PAX3, SCG2) 0.366514590495249 3 0.0106926766215636 1.28668027452397 641 0.40768386608086 3 2 1 -7.62307593537449 LTS-003 chr2 224461949 232672321 8210373 * c(MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, COL4A3, COL4A4, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, C2orf72, SNORD82, AGFG1, HTR2B, SP110, SPATA3-AS1, IRS1, NCL, PDE6D, CAB39, SERPINE2, PID1, DOCK10, C2orf83, MFF, PSMD1, PTMA, WDFY1, NYAP2, SNORD20, CCL20, LOC646736, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCG2, FAM124B, TM4SF20, ARMC9, SPHKAP, SLC19A3, NA NA NA NA NA NA NA NA NA LTS-003 ITM2C, RHBDD1, CUL3, DNER, GPR55, B3GNT7, TRIP12, SP140L) 0.445363623556464 95 0.0611302374856371 0.938074989583972 4936 0.315356492631326 2 1 1 -6.77919689793246 LTS-003 NA NA NA NA LTS-003 chr2 232672322 232672432 111 * COPS7B NA 0 NA 1.522 1 NA NA NA NA NA LTS-003 chr2 232672433 233839680 1167248 * c(MIR1471, CHRND, CHRNG, DIS3L2, TIGD1, ALPI, ALPP, ALPPL2, NGEF, GIGYF2, ECEL1P2, KCNJ13, C2orf82, NPPC, PRSS56, COPS7B, EFHD1, ECEL1, EIF4E2) 0.445606605398696 37 0.0610852798259238 1.55830123576977 1379 0.414553245710237 4 2 2 -6.81157507554922 LTS-003 chr2 233839681 233877257 37577 * NGEF NA 0 NA 1.143 1 NA NA NA NA NA LTS-003 chr2 233877258 234053816 176559 * c(NGEF, INPP5D, NEU2) 0.44 1 NA 1.22135705825372 97 0.189582233673787 3 3 0 -5.797658802839 LTS-003 chr2 234053817 234054237 421 * INPP5D 0.408 1 NA 1.40087977532917 7 0.113770027017748 3 3 0 -5.76442840386053 LTS-003 chr2 234054238 235402242 1348005 * c(LOC100286922, ARL4C, MSL3P1, INPP5D, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, SAG, SPP2, SCARNA6, SCARNA5, TRPM8, DGKD) 0.363656193936608 33 0.0410833640666183 1.19507083560902 1599 0.277149451648355 3 2 1 -6.94404672755152 LTS-003 chr2 235402243 235950187 547945 * c(ARL4C, SH3BP4) 0.38 1 NA 1.30934376468512 99 0.407955691235129 3 3 0 -5.76710473880185 LTS-003 chr2 235950188 235964366 14179 * SH3BP4 0.417623434144412 3 0.0145716619962629 1.30383505008819 96 0.241976552981859 7 4 3 -6.84457180936946 LTS-003 chr2 235964367 236402922 438556 * AGAP1 NA 0 NA 0.56 1 NA NA NA NA NA LTS-003 chr2 236402923 242836535 6433613 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, PRLH, THAP4, ANKMY1, NA NA NA NA NA NA NA NA NA LTS-003 PDCD1, SCLY, ASB1, KIF1A, PPP1R7, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, D2HGDH, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.440659187205337 259 0.0664767833971917 0.928000328961247 6796 0.237722135491149 2 1 1 -6.81668050058833 LTS-003 NA NA NA NA LTS-003 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.892602943126421 25 0.157731385589552 2 NA NA -5.79005695701254 LTS-003 chr3 239351 367757 128407 * CHL1 0.481 1 NA 0.986981055115596 13 0.131247222192827 2 2 0 -5.76780475901791 LTS-003 chr3 367758 3888757 3521000 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1) 0.4502988554186 20 0.0258678320862438 1.0410585144301 801 0.265591152248967 2 1 1 -7.14322958019123 LTS-003 chr3 3888758 3888762 5 * c(SUMF1, LRRN1) NA 0 NA 0.892 1 NA NA NA NA NA LTS-003 chr3 3888763 5248947 1360185 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.438931992184808 14 0.0396196892998895 0.91925428677242 784 0.203413027337532 2 1 1 -6.77825313035097 LTS-003 chr3 5248948 8809157 3560210 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.40411379383088 20 0.123443402756934 1.08140601115451 586 0.243815609764853 2 1 1 -7.23824963594722 LTS-003 chr3 8809158 8809163 6 * OXTR NA 0 NA 0.842 1 NA NA NA NA NA LTS-003 chr3 8809164 27157661 18348498 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, ARPC4-TTLL3, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, LRRC3B, GALNT15, KCNH8, CHCHD4, METTL6, TAMM41, IL17RE, SGO1, PP2D1, EFHB, CPNE9, LINC00691, NEK10, FGD5, CIDECP, DAZL, FANCD2, FBLN2, CAND2, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, THUMPD3, HACL1, TTLL3, NA NA NA NA NA NA NA NA NA LTS-003 LSM3, NKIRAS1, LINC00692, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, HRH1, LOC339862, COL6A4P1, TPRXL, IRAK2, LHFPL4, VENTXP7, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, CCDC174, GHRL, PPARG, OXSM, SETD5, TMEM40, NGLY1, EMC3, BRK1, RAD18, RAB5A, RAF1, RARB, RPL15, RPL32, SATB1, CIDEC, SEC13, RBSN, MTMR14, MRPS25, THRB-AS1, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, THRB, TIMP4, TOP2B, NR2C2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 UBE2E1, UBE2E2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, ZNF385D, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, KAT2B, OXNAD1, SH3BP5, VGLL4, TBC1D5, TATDN2, SRGAP3, IQSEC1, NR1D2) 0.451360259412489 260 0.067899508526154 0.959897467099315 10350 0.233280056272208 2 1 1 -6.77054790875881 LTS-003 NA NA NA NA LTS-003 chr3 27157662 27161256 3595 * NEK10 NA 0 NA 0.775 1 NA NA NA NA NA LTS-003 chr3 27161257 29322525 2161269 * c(ZCWPW2, CMC1, NEK10, AZI2, LINC00693, EOMES, SLC4A7) 0.423464651199947 13 0.131855106957483 0.87290678179906 777 0.198652738349866 2 1 1 -7.02141186531174 LTS-003 chr3 29322526 33626452 4303927 * c(OSBPL10-AS1, CRTAP, CMTM7, OSBPL10, CCR4, TRIM71, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GADL1, ZNF860, DYNC1LI1, CMTM6, TMPPE, TGFBR2, UBP1) 0.419159826496492 27 0.0520413488901085 1.25974474389531 2104 0.602355841526476 2 1 1 -7.26731397171639 LTS-003 chr3 33626453 33630164 3712 * CLASP2 NA 0 NA 0.536 1 NA NA NA NA NA LTS-003 chr3 33630165 35725694 2095530 * c(PDCD6IP, ARPP21, CLASP2) 0.472083778478712 10 0.0239176829052389 0.912533112954721 357 0.220040262422209 2 1 1 -8.01245746032745 LTS-003 chr3 35725695 35725790 96 * ARPP21 NA 0 NA 1.262 1 NA NA NA NA NA LTS-003 chr3 35725791 36873669 1147879 * c(ARPP21, MIR128-2, STAC, DCLK3, TRANK1) 0.463932037022294 8 0.0171630833060796 1.13219795238728 429 0.260898008423396 2 1 1 -8.39646655419378 LTS-003 chr3 36873670 36873674 5 * TRANK1 NA 0 NA 0.804 1 NA NA NA NA NA LTS-003 chr3 36873675 43759927 6886253 * c(ACVR2B-AS1, KRBOX1, SNRK-AS1, CCDC13-AS1, CTDSPL, EIF1B, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, SS18L2, PLCD1, SNRK, SLC25A38, ULK4, ANO10, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, NA NA NA NA NA NA NA NA NA LTS-003 GORASP1, FAM198A, VIPR1, POMGNT2, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.451504388262977 145 0.0515084786384485 0.965236805810023 6515 0.277876932474906 2 1 1 -6.80048498521488 LTS-003 NA NA NA NA LTS-003 chr3 43759928 43760026 99 * ABHD5 NA 0 NA 0.86 1 NA NA NA NA NA LTS-003 chr3 43760027 46623760 2863734 * c(LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2, ZNF502) 0.439972828699481 52 0.0831387018215533 0.924274430761693 3675 0.235552864342246 2 1 1 -6.78037393345818 LTS-003 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.025 1 NA NA NA NA NA LTS-003 chr3 46623907 47958662 1334756 * c(NRADDP, LOC100132146, PRSS46, MIR1226, CSPG5, CCDC12, DHX30, SCAP, NBEAL2, KLHL18, ALS2CL, TMIE, PTPN23, KIF9-AS1, SETD2, PRSS50, PRSS42, PRSS45, MAP4, MYL3, ELP6, PTH1R, KIF9, SMARCC1, TDGF1) 0.461192578934309 26 0.0293880143020141 1.02324119088134 2413 0.389745301350351 2 1 1 -7.21783672125985 LTS-003 chr3 47958663 47960151 1489 * MAP4 NA 0 NA 0.965 1 NA NA NA NA NA LTS-003 chr3 47960152 48637147 676996 * c(MIR711, MIR4443, NME6, TREX1, COL7A1, FBXW12, MAP4, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, SPINK8, UQCRC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.455087876725368 26 0.0255627433221446 0.939133704354899 1599 0.214441462147362 2 1 1 -7.10895129220379 LTS-003 chr3 48637148 48637488 341 * UQCRC1 NA 0 NA 1.015 1 NA NA NA NA NA LTS-003 chr3 48637489 48982638 345150 * c(MIR4793, ARIH2, CELSR3, TMEM89, IP6K2, NCKIPSD, PRKAR2A, ARIH2OS, SLC26A6, UQCRC1, SLC25A20) 0.440606328330709 9 0.0297026934805583 1.0779893915342 968 0.217200606399003 2 1 1 -6.81794352831997 LTS-003 chr3 48982639 48986348 3710 * ARIH2 NA 0 NA 1.296 1 NA NA NA NA NA LTS-003 chr3 48986349 49679961 693613 * c(BSN-AS2, MIR4271, ARIH2, USP19, WDR6, DAG1, KLHDC8B, LAMB2P1, NDUFAF3, AMT, GPX1, CCDC36, IMPDH2, C3orf62, RHOA, LAMB2, MIR191, MIR425, P4HTM, QRICH1, DALRD3, QARS, C3orf84, CCDC71, TCTA, USP4, NICN1, BSN) 0.39858851082047 28 0.0319715481980447 1.26529714498837 1872 0.253476642560606 3 2 1 -7.80187818942626 LTS-003 chr3 49679962 49736045 56084 * c(APEH, MST1, RNF123, BSN) 0.354355791839272 3 0.0994132787911152 1.12288064440097 460 0.228996878630405 3 2 1 -6.75641652828018 LTS-003 chr3 49736046 49736155 110 * RNF123 NA 0 NA 0.941 1 NA NA NA NA NA LTS-003 chr3 49736156 56469148 6732993 * c(SNORD19B, LINC00696, PARP3, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, GNAI2, GNAT1, SPCS1, GRM2, RBM15B, GMPPB, HYAL1, ITIH1, ITIH3, ITIH4, TMEM110, AMIGO3, NA NA NA NA NA NA NA NA NA LTS-003 CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, RPL29, RNF123, SEMA3F, NT5DC2, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, TNNC1, UBA7, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, ESRG, WDR82, BAP1, HYAL3, MON1A, ABHD14B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 HYAL2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1) 0.459135321714208 144 0.0501250107782203 0.965943082295003 9009 0.205456776342654 2 1 1 -6.87992348110695 LTS-003 NA NA NA NA LTS-003 chr3 56469149 57542670 1073522 * c(ARHGEF3-AS1, ASB14, DNAH12, PDE12, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARHGEF3, IL17RD, HESX1) 0.422983640063775 27 0.119948813869575 0.897383608921013 1358 0.222345049536365 2 1 1 -6.79736768836589 LTS-003 chr3 57542671 57542676 6 * PDE12 NA 0 NA 1.071 1 NA NA NA NA NA LTS-003 chr3 57542677 68594346 11051670 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, RPP14, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, DNASE1L3, C3orf67, KCTD6, PDE12, DENND6A, FHIT, FLNB, LRIG1, LINC00698, ARF4, FAM19A1, PDHB, PXK, FEZF2, ADAMTS9, ABHD6, C3orf14, PTPRG, ATXN7, MIR548A2, SLMAP, THOC7, ACOX2, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.445268447178624 52 0.0425929380418952 1.00381948895767 4037 0.236428121996358 2 1 1 -6.99824697427667 LTS-003 chr3 68594347 68594351 5 * FAM19A1 NA 0 NA 0.649 1 NA NA NA NA NA LTS-003 chr3 68594352 71591227 2996876 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, FRMD4B, FOXP1, EOGT, FAM19A1, MITF, LMOD3, TMF1, UBA3) 0.46304090625059 26 0.0289445358201881 0.929754470245503 1153 0.255369700092093 2 1 1 -7.30030407800347 LTS-003 chr3 71591228 71728418 137191 * c(MIR1284, FOXP1) NA 0 NA 1.208 1 NA NA NA NA NA LTS-003 chr3 71728419 71759650 31232 * EIF4E3 0.257459275284401 2 0.267993470069701 1.30255287998221 135 0.267445772518941 4 3 1 -6.75848984837929 LTS-003 chr3 71759651 71774306 14656 * EIF4E3 NA 0 NA 0.483 1 NA NA NA NA NA LTS-003 chr3 71774307 74413676 2639370 * c(PPP4R2, LINC00870, PDZRN3, RYBP, GPR27, EIF4E3, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.458439968813794 10 0.0365678972749475 0.98007661083735 761 0.324156146484082 2 1 1 -6.98945447775716 LTS-003 chr3 74413677 74420409 6733 * CNTN3 NA 0 NA 0.89782120852144 22 0.184794006058976 2 NA NA -5.76494299734052 LTS-003 chr3 74420410 75679988 1259579 * c(MIR1324, CNTN3, FAM86DP) 0.254 1 NA 1.13518339795977 31 0.202514770468883 2 2 0 -6.24116975128772 LTS-003 chr3 75679989 75785519 105531 * c(ZNF717, MIR1324) 0.330938161581036 86 0.0897469043474218 1.41192718838711 165 0.648709550402524 3 2 1 -6.76822585826156 LTS-003 chr3 75785520 75785525 6 * ZNF717 NA 0 NA 0.75 1 NA NA NA NA NA LTS-003 chr3 75785526 75986794 201269 * c(ZNF717, ROBO2) 0.322249884749259 100 0.106025257139585 1.11846526968473 184 0.455216554691807 3 2 1 -6.80398409048108 LTS-003 chr3 75986795 75986813 19 * ROBO2 0.414 1 NA 1.058 1 NA NA NA NA NA LTS-003 chr3 75986814 88205993 12219180 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.430092523377033 27 0.0839619538041468 0.996862565505291 1403 0.267371980358272 2 1 1 -6.87556276654878 LTS-003 chr3 88205994 88207114 1121 * C3orf38 NA 0 NA 0.9404489102714 25 0.201471255187103 2 NA NA -5.76441725319858 LTS-003 chr3 89156549 90283666 1127118 * EPHA3 NA 0 NA 1.47486133991185 199 0.360942488811486 3 NA NA -5.7991935823006 LTS-003 chr3 93591838 94225007 633170 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.437 1 NA 0.992671011345371 357 0.236086622995508 2 2 0 -5.77196151757949 LTS-003 chr3 94225008 113806592 19581585 * c(ZBTB11-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, MIR4446, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, GABRR3, USF3, ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, LINC00636, EPHA6, SLC9C1, PDCL3P4, GTPBP8, NA NA NA NA NA NA NA NA NA LTS-003 TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, CLDND1, NIT2, BBX, PCNP, SENP7, CCDC191, KIAA1524, RPL24, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, OR5H6, OR5H2, ZBED2, CEP97, C3orf52, QTRT2, NAA50, OR5AC2, ARL6, CMSS1, RETNLB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 CCDC54, MINA, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.440365150038772 204 0.0845677414151033 0.946884490667237 8908 0.272069161246107 2 1 1 -6.7666645347536 LTS-003 NA NA NA NA LTS-003 chr3 113806593 113953566 146974 * c(DRD3, ZNF80, QTRT2) NA 0 NA 0.956488878840198 57 0.230382394333959 2 NA NA -5.76443443178235 LTS-003 chr3 113953567 113953571 5 * ZNF80 NA 0 NA 1.125 1 NA NA NA NA NA LTS-003 chr3 113953572 113953927 356 * ZNF80 0.33 1 NA 1.44259348679148 7 0.770844990902841 3 3 0 -5.76441142404527 LTS-003 chr3 113953928 123340301 9386374 * c(LOC100129550, ZBTB20-AS1, IGSF11-AS1, MYLK-AS1, MIR4796, COX17, POLQ, PDIA5, ADCY5, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, HACD2, TIGIT, GAP43, ZBTB20, FAM162A, SEC22A, GOLGB1, TUSC7, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, LSAMP, MIR198, MYLK, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, SEMA5B, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, NA NA NA NA NA NA NA NA NA LTS-003 MIR568, UPK1B, ZNF80, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.358937826235987 114 0.0660762686639197 1.29087712490527 6008 0.380280934353147 3 2 1 -6.83860614133055 LTS-003 NA NA NA NA LTS-003 chr3 123340302 123550298 209997 * c(MYLK-AS1, MYLK) 0.489 1 NA 1.55999541009594 244 0.441953127937873 4 4 0 -5.77352673253269 LTS-003 chr3 123550299 123616248 65950 * MYLK NA 0 NA 1.222 1 NA NA NA NA NA LTS-003 chr3 123616249 133473307 9857059 * c(FAM86JP, MIR548I1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, ALG1L, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, NA NA NA NA NA NA NA NA NA LTS-003 RAB43, LOC339874, H1FX-AS1, CFAP100, NPHP3-AS1, ITGB5, MCM2, PODXL2, ACKR4, PLXNA1, ROPN1, SLC41A3, ACPP, CDV3, IFT122, MUC13, HMCES, ISY1, HEG1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, TMEM108, SNORA7B, SNORA58, TF, TRH, FAM86HP, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, ABTB1, ACAD11, BFSP2, CHCHD6, SLC12A8, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 EFCAB12) 0.360583504305703 206 0.0669644619665486 1.31688093143844 8416 0.319649145339055 3 2 1 -6.79722759506858 LTS-003 NA NA NA NA LTS-003 chr3 133473308 133473406 99 * TF NA 0 NA 1.68 1 NA NA NA NA NA LTS-003 chr3 133473407 140785673 7312267 * c(MIR4788, STAG1, PISRT1, DZIP1L, EPHB1, MRAS, ANAPC13, ARMC8, TRIM42, KY, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, RAB6B, PIK3CB, IL20RB, MSL2, FAIM, SLC25A36, PPP2R3A, MRPS22, SRPRB, RBP1, RBP2, BPESC1, RYK, CLSTN2, SLCO2A1, FOXL2, TF, PRR23A, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, SPSB4, COPB2) 0.344626965839368 59 0.0763351870579207 1.37133800910278 3986 0.314973990106267 3 2 1 -6.74352030000327 LTS-003 chr3 140785674 140851000 65327 * SPSB4 NA 0 NA 2.703 1 NA NA NA NA NA LTS-003 chr3 140851001 141334223 483223 * c(ZBTB38, RASA2, SPSB4, PXYLP1) 0.257799157034922 5 0.0408839821935193 1.97493243959557 494 0.477790463242847 4 3 1 -6.83468257538061 LTS-003 chr3 141334224 141457064 122841 * RNF7 NA 0 NA 1.205 1 NA NA NA NA NA LTS-003 chr3 141457065 161221355 19764291 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, LOC101243545, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, NA NA NA NA NA NA NA NA NA LTS-003 IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, RAP2B, RARRES1, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 IQCJ, HLTF, SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, CHST2, RNF7, TSC22D2, P2RY14) 0.344561111517889 188 0.0717214923546769 1.31541950631209 9678 0.386578077506733 3 2 1 -6.82241286380186 LTS-003 NA NA NA NA LTS-003 chr3 161221356 166578715 5357360 * c(OTOL1, SLITRK3, BCHE, LINC01192, SI) 0.452461567531327 4 0.0385140666943045 1.68752352288488 395 0.768639099150766 4 2 2 -6.87199057182285 LTS-003 chr3 166578716 166958049 379334 * character(0) NA 0 NA 2.239 1 NA NA NA NA NA LTS-003 chr3 166958050 167747022 788973 * c(PDCD10, WDR49, GOLIM4, SERPINI1, SERPINI2, LINC01330, ZBBX) 0.391433051064389 10 0.0519107139444472 2.04140852511639 446 0.461176046402217 5 3 2 -6.76534344052047 LTS-003 chr3 167747023 168861668 1114646 * c(MECOM, GOLIM4, MIR551B, EGFEM1P) NA 0 NA 2.1171494998188 241 0.384749673293669 5 NA NA -5.76586916225978 LTS-003 chr3 168861669 168862716 1048 * MECOM NA 0 NA 1.59 1 NA NA NA NA NA LTS-003 chr3 168862717 169486144 623428 * c(MECOM, TERC, ACTRT3) 0.226 1 NA 1.80592923214962 59 0.432250319818333 4 4 0 -5.76591512201292 LTS-003 chr3 169486145 170736408 1250264 * c(LOC100128164, LRRC34, RPL22L1, GPR160, LRRIQ4, SAMD7, CLDN11, PRKCI, MYNN, EIF5A2, SLC7A14, SKIL, SLC2A2, SEC62, LRRC31, PHC3, ACTRT3) 0.254174845762806 22 0.0875529277152692 1.6674478781741 1375 0.450041389581127 4 3 1 -6.77147434381641 LTS-003 chr3 170736409 170744339 7931 * SLC2A2 NA 0 NA 1.256 1 NA NA NA NA NA LTS-003 chr3 170744340 172013303 1268964 * c(TNIK, TMEM212, PLD1, FNDC3B, SLC2A2, MIR569) 0.361792881729568 5 0.0479739512652439 1.2870211945146 559 0.27437658429997 3 2 1 -6.78414883479527 LTS-003 chr3 172013304 172737429 724126 * c(ECT2, GHSR, NCEH1, FNDC3B, SPATA16, TNFSF10) 0.265994397060835 20 0.0467446591376463 1.59944222450352 590 0.485555047043325 4 3 1 -6.7636380421896 LTS-003 chr3 172737430 172766729 29300 * SPATA16 NA 0 NA 1.784 1 NA NA NA NA NA LTS-003 chr3 172766730 175042146 2275417 * c(NAALADL2-AS3, NLGN1, NAALADL2, SPATA16) 0.311188536978371 8 0.0352258022315623 1.91551316240903 265 0.579240749699176 4 3 1 -7.38948408017612 LTS-003 chr3 175042147 175165000 122854 * c(MIR4789, NAALADL2) NA 0 NA 1.313 1 NA NA NA NA NA LTS-003 chr3 175165001 183029495 7864495 * c(LINC00578, LINC01014, KCNMB2, DNAJC19, TTC14, MCF2L2, ATP11B, NAALADL2, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, MFN1, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, FXR1, B3GNT5, ACTL6A, USP13) 0.328178332015518 37 0.122053912914161 1.351584263994 3068 0.362340386873156 3 2 1 -6.75805854588343 LTS-003 chr3 183029496 183381405 351910 * c(LINC00888, MCF2L2, KLHL24, KLHL6) 0.447438948973308 5 0.0301280600105616 1.8348935182375 210 0.439757359307306 4 2 2 -6.84655038248258 LTS-003 chr3 183381406 183382632 1227 * KLHL24 NA 0 NA 1.464 1 NA NA NA NA NA LTS-003 chr3 183382633 183976108 593476 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, AP2M1, HTR3C, DVL3, HTR3D, HTR3E, KLHL24, ABCF3, PARL, YEATS2, MAP6D1, EIF2B5, VWA5B2, ECE2) 0.298235386805596 33 0.10254810401155 1.4823471999241 1485 0.340099419648127 4 3 1 -6.85617758258727 LTS-003 chr3 183976109 183976241 133 * ECE2 0.444 1 NA 1.50377546416694 3 0.142004694758072 3 3 0 -5.76445060586686 LTS-003 chr3 183976242 184063140 86899 * c(FAM131A, EIF4G1, PSMD2, SNORD66, CAMK2N2, ECE2) 0.380768145654494 12 0.0410184732957621 1.45700079337388 591 0.312138656913389 5 3 2 -6.97359722938486 LTS-003 chr3 184063141 184063273 133 * FAM131A NA 0 NA 0.975 1 NA NA NA NA NA LTS-003 chr3 184063274 184429612 366339 * c(CLCN2, FAM131A, EPHB3, POLR2H, MAGEF1, THPO, CHRD) 0.40242973498376 23 0.0352831572534368 1.32108710083651 544 0.283219001223612 5 3 2 -7.32700434987441 LTS-003 chr3 184429613 184429687 75 * MAGEF1 NA 0 NA 0.941 1 NA NA NA NA NA LTS-003 chr3 184429688 194080725 9651038 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, IGF2BP2, CLDN16, RPL39L, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, EHHADH, AHSG, EIF4A2, LIPH, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, TBCCD1, P3H2, MASP1, HRASLS, SENP2, NA NA NA NA NA NA NA NA NA LTS-003 RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, ATP13A4, MGC2889, TP63, TMEM41A, CLDN1, MAP3K13, ADIPOQ) 0.438677337693384 144 0.0766855780744684 1.00829088946006 5456 0.359063313382232 2 1 1 -6.84055689458576 LTS-003 NA NA NA NA LTS-003 chr3 194080726 194362620 281895 * c(TMEM44-AS1, LRRC15, GP5, LINC00884, LSG1, ATP13A3, TMEM44) 0.411 1 NA 0.931181689098862 417 0.171982432599273 2 2 0 -5.7697733660831 LTS-003 chr3 194362621 194369579 6959 * LSG1 0 1 NA 1.08037362691125 21 0.669704554618072 2 2 0 -5.76453967198566 LTS-003 chr3 194369580 195452013 1082434 * c(LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, MUC20, ACAP2, APOD, PPP1R2, LSG1, MIR570, SDHAP2) 0.34250623997747 23 0.11983889053139 0.931178069397453 663 0.295098399820609 2 1 1 -7.07310275318879 LTS-003 chr3 195452014 195452618 605 * MUC20 NA 0 NA 2.249 1 NA NA NA NA NA LTS-003 chr3 195452619 195476016 23398 * c(MUC20, MUC4) 0.334532672271945 14 0.0730568046337691 1.44727467195695 85 2.05017541655719 9 6 3 -6.73964231729948 LTS-003 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.895 1 NA NA NA NA NA LTS-003 chr3 195477782 195782177 304396 * c(TNK2, SDHAP1, MUC4, TFRC) 0.340448244177296 22 0.167599663442822 0.952314534012908 473 0.256470487760676 2 1 1 -6.91581422910671 LTS-003 chr3 195782178 195782184 7 * TFRC 0.427 1 NA 1.707 1 NA NA NA NA NA LTS-003 chr3 195782185 196803586 1021402 * c(MFI2-AS1, TM4SF19-TCTEX1D2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, TFRC, PIGZ, CEP19) 0.445739806102177 53 0.0721346557705447 0.937769532745006 1791 0.22946354717053 2 1 1 -6.75446969951443 LTS-003 chr3 196803587 196807807 4221 * DLG1 NA 0 NA 1.22 1 NA NA NA NA NA LTS-003 chr3 196807808 197769728 961921 * c(MIR922, DLG1-AS1, MIR4797, DLG1, LOC220729, RPL35A, BDH1, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.361178788058443 11 0.0382686674590442 1.22827861270818 921 0.277229082912491 3 2 1 -6.83797906792313 LTS-003 chr3 197769729 197770512 784 * LMLN NA 0 NA 1.36990937103435 19 0.255030545126203 3 NA NA -5.76441062950678 LTS-003 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.265 1 NA 0.82810732493625 14 0.218028529235143 2 2 0 -5.76638796104036 LTS-003 chr4 60336 2834144 2773809 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, NA NA NA NA NA NA NA NA NA LTS-003 TMEM129) 0.445552258783514 91 0.0699835442021655 0.894955603272088 4314 0.209913982415245 2 1 1 -6.92959574579587 LTS-003 NA NA NA NA LTS-003 chr4 2834145 2834674 530 * SH3BP2 NA 0 NA 1.07 1 NA NA NA NA NA LTS-003 chr4 2834675 6925237 4090563 * c(LOC100133461, STX18-AS1, MIR378D1, HTT-AS, LINC01587, MFSD10, MRFAP1L1, ADD1, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, ZBTB49, EVC, MAN2B2, NSG1, LOC285484, DOK7, LINC00955, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, FAM86EP, LRPAP1, MSX1, STX18, CYTL1, PPP2R2C, BLOC1S4, STK32B, LYAR, TBC1D14, RGS12, S100P, SH3BP2, WFS1, TMEM128, NOP14, MRFAP1, LOC93622, KIAA0232) 0.451639534220427 139 0.0634378930993797 0.9502283550633 3686 0.244463685922116 2 1 1 -6.78179545655111 LTS-003 chr4 6925238 6925701 464 * TBC1D14 NA 0 NA 0.875926597569934 10 0.135540235928508 2 NA NA -5.76453759526384 LTS-003 chr4 6925702 6955972 30271 * TBC1D14 0.308 1 NA 1.45862892568634 5 0.292893837422367 3 3 0 -5.76547806178422 LTS-003 chr4 6955973 8391049 1435077 * c(LOC100129931, MIR4274, MIR4798, CCDC96, SH3TC1, TBC1D14, SORCS2, AFAP1, FLJ36777, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TADA2B, HTRA3) 0.354615045640727 54 0.0534440151309701 1.27330683862597 1362 0.307273038074755 3 2 1 -6.77193504070117 LTS-003 chr4 8391050 8391079 30 * ACOX3 NA 0 NA 1.24 1 NA NA NA NA NA LTS-003 chr4 8391080 8391354 275 * ACOX3 NA 0 NA 0.686 1 NA NA NA NA NA LTS-003 chr4 8391355 8394094 2740 * ACOX3 0.476 1 NA 0.827027509740475 5 0.192095809428524 2 2 0 -5.76540209758577 LTS-003 chr4 8394095 25419283 17025189 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, PPARGC1A, C1QTNF7, CLNK, CPEB2, PACRGL, LINC01085, TRMT44, DHX15, ADGRA3, DRD5, TAPT1, TAPT1-AS1, LCORL, BOD1L1, FBXL5, FAM184B, GPR78, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, LAP3, SEPSECS, NA NA NA NA NA NA NA NA NA LTS-003 DCAF16, LGI2, PI4K2B, SLC2A9, CC2D2A, GBA3, NKX3-2, QDPR, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, MED28, KCNIP4, ACOX3, FGFBP2, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, RAB28, CD38, WDR1, HS3ST1, FGFBP1) 0.439218417049539 176 0.0694401374912607 0.959317907030854 5352 0.26693516334791 2 1 1 -6.73610882423086 LTS-003 NA NA NA NA LTS-003 chr4 25419284 25419285 2 * ANAPC4 NA 0 NA 0.728 1 NA NA NA NA NA LTS-003 chr4 25419286 26322726 903441 * c(SLC34A2, SEL1L3, ANAPC4, RBPJ, SMIM20) 0.393607703444553 3 0.029022979401387 0.780003837738513 368 0.199161266263207 2 1 1 -8.26774363976773 LTS-003 chr4 26322727 26363941 41215 * RBPJ NA 0 NA 0.944 1 NA NA NA NA NA LTS-003 chr4 26363942 39452944 13089003 * c(MIR4275, MIR4801, TLR6, PTTG2, ARAP2, KLB, TBC1D1, RBPJ, DTHD1, PCDH7, KLHL5, KLF3, PGM2, C4orf19, TBC1D19, NWD2, STIM2, WDR19, RFC1, MIR574, TLR1, RELL1, KLF3-AS1, TMEM156, TLR10, CCKAR, FAM114A1) 0.429920386596544 87 0.105466308402095 0.927972521717165 2705 0.255993431113658 2 1 1 -6.87022117681341 LTS-003 chr4 39452945 39452966 22 * KLB NA 0 NA 0.854 1 NA NA NA NA NA LTS-003 chr4 39452967 40810750 1357784 * c(MIR4802, UGDH-AS1, LIAS, KLB, SMIM14, PDS5A, UBE2K, LOC344967, RHOH, LOC401127, RBM47, CHRNA9, N4BP2, RPL9, UGDH, NSUN7) 0.415785611989146 13 0.128162406984664 0.857102988251385 1067 0.225981937886083 2 1 1 -6.94446015326258 LTS-003 chr4 40810751 41750966 940216 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1, NSUN7, PHOX2B) 0.437112525383697 11 0.0332002190573277 1.03867986350394 660 1.45327601487639 2 1 1 -6.73888748584688 LTS-003 chr4 41750967 41937140 186174 * c(TMEM33, PHOX2B) NA 0 NA 0.994 1 NA NA NA NA NA LTS-003 chr4 41937141 48988450 7051310 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.449646672447798 111 0.0676794741432823 0.939186955985676 3703 0.243085423914029 2 1 1 -6.79829899573675 LTS-003 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.901586461526986 87 0.208920302658384 2 NA NA -5.76852686324895 LTS-003 chr4 52709193 52780235 71043 * DCUN1D4 0.48 1 NA 1.00657313819304 85 0.239212259389056 2 2 0 -5.76607015662757 LTS-003 chr4 52780236 56238886 3458651 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.456790788554066 15 0.0286995934930561 0.972561466612253 1590 0.231559018468131 2 1 1 -7.08603400998643 LTS-003 chr4 56238887 62543162 6304276 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, ADGRL3, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.461345958876631 38 0.0355643887449149 0.876824696854523 1663 0.208948309090166 2 1 1 -7.70122112704039 LTS-003 chr4 62543163 62596211 53049 * ADGRL3 NA 0 NA 1.109 1 NA NA NA NA NA LTS-003 chr4 62596212 65171001 2574790 * c(ADGRL3, TECRL) 0.447473541062262 12 0.0318671484685271 1.07444264595037 265 0.307261891989106 2 1 1 -7.03352059877513 LTS-003 chr4 65171002 65175534 4533 * TECRL NA 0 NA 0.857 1 NA NA NA NA NA LTS-003 chr4 65175535 68906584 3731050 * c(EPHA5-AS1, CENPC, EPHA5, TECRL, STAP1, GNRHR, TMPRSS11A, LOC401134, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.456639870581427 38 0.040454283770587 0.931375524492247 1000 0.248547097435564 2 1 1 -6.94352624734646 LTS-003 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.31298614841325 43 0.257507085775918 1 NA NA -5.76711031593488 LTS-003 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.995 1 NA NA NA NA NA LTS-003 chr4 68907461 80828334 11920874 * c(FAM47E, FTLP10, CSN1S2BP, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, PCAT4, ANTXR2, TMPRSS11B, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, GK2, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HTN1, HTN3, NA NA NA NA NA NA NA NA NA LTS-003 CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, UBA6-AS1, LOC550113, SDAD1, BMP2K, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, FRAS1, NAA11, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 SCARB2, ADAMTS3, G3BP2) 0.439983376491541 162 0.0865401549149204 0.944662965879785 7808 0.240331233852665 2 1 1 -6.76817095264632 LTS-003 NA NA NA NA LTS-003 chr4 80828335 80828414 80 * ANTXR2 NA 0 NA 0.746 1 NA NA NA NA NA LTS-003 chr4 80828415 84465804 3637390 * c(THAP9-AS1, HPSE, HELQ, ANTXR2, LIN54, RASGEF1B, FGF5, SEC31A, C4orf22, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, GPAT3, HNRNPDL) 0.446168872519935 57 0.0448619924984092 0.867094348012228 2010 0.227562805019081 2 1 1 -7.18334988054473 LTS-003 chr4 84465805 84502671 36867 * GPAT3 NA 0 NA 0.949 1 NA NA NA NA NA LTS-003 chr4 84502672 89911698 5409027 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, C4orf36, PPM1K, DMP1, DSPP, WDFY3, NAP1L5, FAM13A-AS1, IBSP, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, NKX6-1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, MEPE, KLHL8, PTPN13, SPP1, ARHGAP24, SPARCL1, GPAT3, HERC3, ABCG2) 0.451230262796459 47 0.0300933330764835 0.925564486326172 3304 0.215197685326151 2 1 1 -7.00938979110065 LTS-003 chr4 89911699 98109018 8197320 * c(FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.442017022193608 64 0.0673493155684576 1.02087412731568 1777 0.661936672130459 2 1 1 -6.78274863262873 LTS-003 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.794 1 NA NA NA NA NA LTS-003 chr4 98480011 124324893 25844883 * c(SNHG8, PP12613, MIR1243, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, SEC24B, CENPE, RRH, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, TMEM155, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SPATA5, BBS12, SGMS2, SYNPO2, EGF, EIF4E, ENPEP, FABP2, FGF2, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, ANK2, H2AFZ, NA NA NA NA NA NA NA NA NA LTS-003 HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, LINC01061, C4orf3, MAD2L1, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, USP53, TET2, ARHGEF38, MCUB, BANK1, BBS7, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, METTL14, OSTC, IL21, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UGT8, ELOVL6, NDNF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ARSJ, GSTCD, TNIP3, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, PRSS12, LAMTOR3, PDE5A, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.444390757775716 178 0.0552836031086815 0.908956283819084 11664 0.288082922434411 2 1 1 -7.26715034115113 LTS-003 NA NA NA NA LTS-003 chr4 125590045 126237948 647904 * c(ANKRD50, FAT4) NA 0 NA 1.39272339786042 120 0.20805828998339 3 NA NA -5.76992544170579 LTS-003 chr4 126237949 128625439 2387491 * c(MIR2054, INTU, FAT4) 0.458192400713233 11 0.0353987673128984 1.03174763033828 431 0.186208603909323 2 1 1 -7.20036847443198 LTS-003 chr4 128625440 141600320 12974881 * c(SCOC-AS1, LINC00499, PGRMC2, CLGN, PLK4, SCLT1, C4orf33, PABPC4L, MGAT4D, ELF2, HSPA4L, TBC1D9, SLC7A11, ELMOD2, MFSD8, NOCT, INTU, MGST2, NDUFC1, PCDH18, LARP1B, MAML3, PCDH10, SCOC, SLC7A11-AS1, LINC00616, TNRC18P1, UCP1, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, MGARP) 0.45086720739226 36 0.0448847112231693 0.90537626097534 3124 0.958244854661435 2 1 1 -6.84249249279116 LTS-003 chr4 141600321 141974816 374496 * c(TBC1D9, RNF150) 0.396 1 NA 0.956306159002271 125 0.145044075614855 2 2 0 -5.76458231994118 LTS-003 chr4 141974817 144130883 2156067 * c(ZNF330, IL15, RNF150, USP38, INPP4B) 0.338388713888581 9 0.220537852634065 0.92797841525334 509 0.254226387376586 2 1 1 -6.86765295603518 LTS-003 chr4 144130884 144135718 4835 * USP38 0.455 1 NA 0.911383637774462 25 0.140616796056991 2 2 0 -5.76480871843537 LTS-003 chr4 144135719 155155730 11020012 * c(MIR3140, LINC01095, MIR4799, ANAPC10, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, FREM3, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, GAB1, ARFIP1, RNF175, GYPA, GYPB, GYPE, ANXA2P1, PRSS48, SMAD1, NR3C2, GUSBP5, GATB, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, TMEM184C, ABCE1, RPS3A, SFRP2, HHIP, HHIP-AS1, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, USP38, SMARCA5, FHDC1, SNORD73A, PRMT9, NA NA NA NA NA NA NA NA NA LTS-003 LRBA) 0.429362502037712 69 0.112864210107871 0.9073110626603 4914 0.243268119075027 2 1 1 -7.07241776598439 LTS-003 NA NA NA NA LTS-003 chr4 155155731 159443195 4287465 * c(CTSO, RBM46, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, PLRG1, DCHS2, TMEM144, PDGFC, RXFP1, TDO2, MAP9, LRAT) 0.446357357074636 60 0.0436522726092789 0.975218210417855 2113 0.343388083605223 2 1 1 -6.78350913174871 LTS-003 chr4 159443196 159493762 50567 * RXFP1 NA 0 NA 1.127 1 NA NA NA NA NA LTS-003 chr4 159493763 159642648 148886 * c(C4orf46, ETFDH, PPID, RXFP1) 0.334777805951102 5 0.0329651330954389 1.17359551627568 328 0.263823357560613 3 2 1 -6.93213687592828 LTS-003 chr4 159642649 159644285 1637 * PPID NA 0 NA 1.048 1 NA NA NA NA NA LTS-003 chr4 159644286 162954926 3310641 * c(MIR3688-1, MIR3688-2, C4orf45, PPID, FSTL5, FNIP2, RAPGEF2) 0.414960789576105 7 0.0612535713244542 0.924166970977912 596 0.205108062150693 2 1 1 -6.86056383880074 LTS-003 chr4 162954927 162954937 11 * FSTL5 NA 0 NA 0.903 1 NA NA NA NA NA LTS-003 chr4 162954938 163032386 77449 * FSTL5 NA 0 NA 1.167 1 NA NA NA NA NA LTS-003 chr4 163032387 164245405 1213019 * c(NPY1R, FSTL5, NAF1) 0.28 1 NA 1.18173914782237 81 0.236436184718931 3 3 0 -6.00757287705329 LTS-003 chr4 164245406 166419222 2173817 * c(LINC01207, APELA, KLHL2, CPE, FAM218A, TRIM60, TMEM192, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, MARCH1, TMA16, MSMO1, MIR578, TKTL2) 0.324991730177112 23 0.0788415381781234 1.26134992632398 875 0.391462880896738 3 2 1 -6.85267863329203 LTS-003 chr4 166419223 167654607 1235385 * c(CPE, SPOCK3, TLL1) 0.393306272435919 3 0.0219317121994613 0.989465569435422 211 0.359841196010403 2 1 1 -8.32976054921336 LTS-003 chr4 167654608 167655482 875 * SPOCK3 0.472 1 NA 0.864082915933775 17 0.234619638990431 2 2 0 -5.7645160136768 LTS-003 chr4 167655483 183836203 16180721 * c(MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, ANXA10, SCRG1, WDR17, CLCN3, SPATA4, ASB5, DCTD, AGA, PALLD, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, HPF1, NEIL3, DDX60, TENM3, SH3RF1, SPCS3, LINC00290, VEGFC, HAND2-AS1, GLRA3, CEP44, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.438133890566235 95 0.0703118903606767 0.935340548634013 3713 0.424475452620422 2 1 1 -6.77149623191592 LTS-003 chr4 183836204 183836511 308 * DCTD NA 0 NA 0.806 1 NA NA NA NA NA LTS-003 chr4 183836512 186544337 2707826 * c(CLDN24, MIR3945, LINC01093, ENPP6, WWC2-AS2, DCTD, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.434182666730675 34 0.113774948293462 0.872496867314962 2146 0.237666429225596 2 1 1 -6.98570063216166 LTS-003 chr4 186544338 189012728 2468391 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, KLKB1, MTNR1A, FLJ38576, TLR3, SORBS2) 0.461679777790713 15 0.0373276356196368 0.976670674509328 1001 0.215793011041566 2 1 1 -7.04819882904206 LTS-003 chr4 189012729 189661346 648618 * c(TRIML2, TRIML1, LINC01060) 0.063 1 NA 1.00312240194335 123 0.23216398103 2 2 0 -5.77821690545991 LTS-003 chr4 189661347 190981487 1320141 * FRG1 0.330947540538601 11 0.075799736147298 0.889616427034934 149 0.30413919258665 2 1 1 -7.73138957672123 LTS-003 chr4 190981488 190981567 80 * character(0) NA 0 NA 1.244 1 NA NA NA NA NA LTS-003 chr5 140347 187612 47266 * PLEKHG4B 0.386 1 NA 1.51299202730223 217 0.306460567250895 3 3 0 -5.76790546077768 LTS-003 chr5 187613 483564 295952 * c(PDCD6, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, AHRR, SDHA, SLC9A3) 0.407259545949828 32 0.0901850248637623 1.55987036982948 634 0.405443915553779 4 2 2 -6.80188448104528 LTS-003 chr5 483565 612478 128914 * c(MIR4456, LOC100996325, CEP72, SLC9A3) NA 0 NA 1.42420209369567 35 0.271676036682596 3 NA NA -5.76673840180759 LTS-003 chr5 612479 619107 6629 * CEP72 NA 0 NA 1.993 1 NA NA NA NA NA LTS-003 chr5 619108 661419 42312 * c(TPPP, CEP72) 0.253 1 NA 2.03660375061149 77 0.519022959216759 5 5 0 -5.76471372879562 LTS-003 chr5 661420 741742 80323 * TPPP 0.290033893919362 5 0.109932706689138 1.98458534131441 123 0.516678867362706 4 3 1 -6.74967949089551 LTS-003 chr5 741743 748684 6942 * character(0) 0.233547955994168 6 0.0398881770286218 4.2967577121457 39 2.03957349508062 9 7 2 -6.73329239412355 LTS-003 chr5 748685 751243 2559 * character(0) NA 0 NA 1.479 1 NA NA NA NA NA LTS-003 chr5 751244 796495 45252 * ZDHHC11 0.405756590923975 9 0.0795122282698985 1.81278969682574 40 1.25030709022696 5 3 2 -6.73474629166949 LTS-003 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 1.15 1 NA NA NA NA NA LTS-003 chr5 801171 840867 39697 * ZDHHC11 0.21 1 NA 1.11660586320885 68 0.666332558216029 2 2 0 -5.76563228839794 LTS-003 chr5 840868 843710 2843 * ZDHHC11 NA 0 NA 2.05 1 NA NA NA NA NA LTS-003 chr5 843711 981476 137766 * c(BRD9, ZDHHC11, TRIP13) 0.312 1 NA 1.9537304666343 220 0.541783072257529 5 5 0 -5.76713017503541 LTS-003 chr5 981477 989762 8286 * LOC100506688 NA 0 NA 1.185 1 NA NA NA NA NA LTS-003 chr5 989763 1223835 234073 * c(LOC100506688, MIR4635, SLC12A7, SLC6A19, NKD2) 0.341536680557716 16 0.0496983819320777 1.32939352515866 355 0.33185834666366 3 2 1 -6.76358819229776 LTS-003 chr5 1223836 1223874 39 * SLC6A19 0.467 1 NA 1.16331072923018 3 0.503404741071569 3 3 0 -5.76441230170536 LTS-003 chr5 1223875 2754483 1530609 * c(MIR4277, MIR4457, C5orf38, IRX2, SLC6A19, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, TERT, SDHAP3, LOC728613, LPCAT1, CLPTM1L) 0.389695784217462 29 0.046216800093012 1.28165026146259 787 0.289127835868726 3 2 1 -7.13248231442632 LTS-003 chr5 2754484 2755088 605 * C5orf38 NA 0 NA 0.953 1 NA NA NA NA NA LTS-003 chr5 2755089 13944681 11189593 * c(SNORD123, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4636, MARCH6, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, DAP, ADAMTS16, DNAH5, CCT5, ICE1, LINC01018, LINC01019, LOC285692, LINC01020, FLJ33360, LINC01194, LOC442132, MTRR, TAS2R1, NSUN2, ANKRD33B, SRD5A1, LOC729506, FASTKD3, IRX1, ROPN1L, MED10, SEMA5A) 0.448659796006686 89 0.0717816192923571 1.00259103964616 2896 0.250612514851878 2 1 1 -6.95041240318246 LTS-003 chr5 13944682 14143929 199248 * TRIO NA 0 NA 0.656 1 NA NA NA NA NA LTS-003 chr5 14143930 14406070 262141 * TRIO 0.276771569227826 5 0.0374926659494894 0.627840717603559 184 0.131942881927117 1 1 0 -10.5647985488825 LTS-003 chr5 14406071 14406583 513 * TRIO NA 0 NA 0.967 1 NA NA NA NA NA LTS-003 chr5 14406584 32101393 17694810 * c(LOC100130744, CDH6, MIR4279, MIR4637, CDH9, CDH10, CDH12, CDH18, BASP1, PDZD2, FBXL7, LOC285696, DROSHA, LOC340107, LOC401177, MARCH11, MYO10, PMCHL1, FAM134B, FAM105A, C5orf22, ANKH, PRDM9, LINC01021, TRIO, GUSBP1, LSP1P3, OTULIN, ZNF622) 0.444463600777942 47 0.0812805695712342 0.998611811017746 2562 0.225554313588264 2 1 1 -7.04808492934951 LTS-003 chr5 32101394 32108036 6643 * PDZD2 NA 0 NA 1.637 1 NA NA NA NA NA LTS-003 chr5 32108037 32109443 1407 * PDZD2 0.477 1 NA 1.87248868180253 27 0.304559164860105 4 4 0 -5.76444693920257 LTS-003 chr5 32109444 32125842 16399 * c(PDZD2, GOLPH3) 0.276 1 NA 1.84040467797066 57 0.401708317134632 4 4 0 -5.76454101175001 LTS-003 chr5 32125843 32143988 18146 * GOLPH3 NA 0 NA 1.61897305922069 25 0.281032578182673 4 NA NA -5.76533375228048 LTS-003 chr5 32143989 32173896 29908 * GOLPH3 NA 0 NA 0.81 1 NA NA NA NA NA LTS-003 chr5 32173897 32276795 102899 * c(MTMR12, GOLPH3) 0.192193916906457 2 0.347896536343781 0.913386309064887 146 0.329980421757875 2 2 0 -6.79082601241035 LTS-003 chr5 32276796 35089828 2813033 * c(SUB1, C1QTNF3, DNAJC21, TTC23L, AMACR, RAI14, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, BRIX1, PRLR, RAD1, AGXT2, TARS, ADAMTS12) 0.258228403663094 25 0.0870714840423277 1.64392223458057 2008 0.551166428931262 4 3 1 -6.77532447587532 LTS-003 chr5 35617916 36688404 1070489 * c(NADK2, UGT3A1, CAPSL, UGT3A2, RANBP3L, IL7R, SKP2, SLC1A3, MIR580, SPEF2, LMBRD2) 0.24578701320436 20 0.0323856287165839 1.94487924328688 1290 0.481892172451289 5 4 1 -7.05118070530689 LTS-003 chr5 36688405 37288535 600131 * c(NIPBL, NIPBL-AS1, SLC1A3, C5orf42) 0.338710292835681 10 0.0611955880762657 1.26039974137784 612 0.278263800482731 3 2 1 -6.79015808418527 LTS-003 chr5 37288536 37294473 5938 * NUP155 0.427 1 NA 1.28316391473361 59 0.236508911512895 3 3 0 -5.76461804166455 LTS-003 chr5 37294474 37605375 310902 * c(WDR70, NUP155) 0.328 1 NA 1.210334164776 188 0.262352666637653 3 3 0 -5.80039281165273 LTS-003 chr5 37605376 37687891 82516 * WDR70 NA 0 NA 0.979 1 NA NA NA NA NA LTS-003 chr5 37687892 41309040 3621149 * c(MIR3650, EGFLAM-AS2, LOC100506548, EGFLAM-AS4, GDNF-AS1, MROH2B, EGFLAM, DAB2, TTC33, RICTOR, FYB, GDNF, PLCXD3, LIFR, WDR70, PRKAA1, PTGER4, RPL37, SNORD72, C6, C7, C9, CARD6, OSMR) 0.432056130384934 29 0.108404756044211 0.950361683370638 2353 0.372933654579433 2 1 1 -6.73493505278477 LTS-003 chr5 41309041 41907852 598812 * c(C5orf51, PLCXD3, OXCT1) 0 1 NA 0.984795692771335 253 0.269972219747416 2 2 0 -5.76757400035224 LTS-003 chr5 41907853 42629217 721365 * c(FBXO4, GHR, C5orf51) NA 0 NA 1.02853317165902 205 0.327014186238084 2 NA NA -5.78350478934615 LTS-003 chr5 42629218 42646347 17130 * GHR NA 0 NA 1.244 1 NA NA NA NA NA LTS-003 chr5 42646348 43380592 734245 * c(CCDC152, LOC100132356, LOC100506639, LOC153684, NIM1K, GHR, HMGCS1, ANXA2R, CCL28, SELENOP, LOC648987, ZNF131) 0.335573661287749 12 0.110938421357676 1.23316658774658 516 0.430865443329047 3 2 1 -6.76943546179388 LTS-003 chr5 43380593 43388596 8004 * CCL28 0 5 0 1.75651697688315 42 0.612321279716372 0 0 0 -Inf LTS-003 chr5 43388597 43412224 23628 * CCL28 NA 0 NA 0.899 1 NA NA NA NA NA LTS-003 chr5 43412225 44809162 1396938 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, C5orf34, CCL28, TMEM267) 0.44649810632819 5 0.0272800293254974 0.909953513706197 451 0.233117359998971 2 1 1 -6.89421350144293 LTS-003 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.07007141326872 149 0.224784746986489 2 NA NA -5.88567851624987 LTS-003 chr5 49692017 49695048 3032 * EMB 0.497 1 NA 0.84075826144993 59 0.284059020587429 2 2 0 -5.76480752401633 LTS-003 chr5 49695049 52389455 2694407 * c(EMB, ISL1, ITGA1, ITGA2, PELO, LOC642366, PARP8) 0.45337566297429 15 0.0342792454214889 0.934627791473463 889 0.256160053083283 2 1 1 -6.93056394507983 LTS-003 chr5 52389456 53041503 652048 * c(FST, LOC257396, ITGA2, MOCS2, NDUFS4) NA 0 NA 0.949210018484371 159 0.23354605739913 2 NA NA -5.76535252312932 LTS-003 chr5 53041504 53180599 139096 * character(0) NA 0 NA 0.69 1 NA NA NA NA NA LTS-003 chr5 53180600 53751901 571302 * c(ARL15, MIR581, HSPB3) 0.247 1 NA 0.619417926040308 83 0.171795204020939 1 1 0 -5.87355842624943 LTS-003 chr5 53751902 68850398 15098497 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, PIK3R1, DHX29, NA NA NA NA NA NA NA NA NA LTS-003 DDX4, SGTB, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.213560778329562 110 0.0678320818352576 0.612482471302189 7050 0.178792208276321 1 1 0 -8.89161143375726 LTS-003 NA NA NA NA LTS-003 chr5 68850399 69373289 522891 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.90438159803121 39 0.294322892266777 2 NA NA -5.77735171257072 LTS-003 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.311 1 NA NA NA NA NA LTS-003 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.358869930064652 59 0.132308132202345 1 NA NA -8.33512869729971 LTS-003 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.545 1 NA NA NA NA NA LTS-003 chr5 70357051 90679120 20322070 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, NA NA NA NA NA NA NA NA NA LTS-003 FAM169A, RNU5E-1, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.214998523598474 160 0.0655777992878227 0.629074660148614 9889 0.346885637770147 1 1 0 -8.42402375308558 LTS-003 NA NA NA NA LTS-003 chr5 92919258 93120209 200952 * c(MIR2277, POU5F2, NR2F1, FAM172A) 0.161500836683801 5 0.0376563407675255 0.905982224065646 180 0.209972738912178 1 1 0 -7.4092873826583 LTS-003 chr5 93120210 93159798 39589 * FAM172A NA 0 NA 0.517 1 NA NA NA NA NA LTS-003 chr5 93159799 96367762 3207964 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.217977433163181 45 0.0644654241364385 0.589950473968329 2353 0.160873093209309 1 1 0 -7.58590418517377 LTS-003 chr5 96367763 96371342 3580 * character(0) NA 0 NA 0.890404808162753 72 0.210620801133481 2 NA NA -5.76468544981145 LTS-003 chr5 96371343 123985443 27614101 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, LOX, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, PRR16, COMMD10, PGGT1B, NA NA NA NA NA NA NA NA NA LTS-003 EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.225413388909561 196 0.060070055909367 0.629920050047649 7850 0.188596346542087 1 1 0 -10.9815625632967 LTS-003 NA NA NA NA LTS-003 chr5 123985444 124081034 95591 * ZNF608 NA 0 NA 0.642268905369453 52 0.110315321742546 1 NA NA -5.84793439803758 LTS-003 chr5 124081035 125695874 1614840 * c(ZNF608, GRAMD3) 0.491 1 NA 1.15235844488953 5 0.763187591618208 3 3 0 -5.80917460819256 LTS-003 chr5 125695875 125972041 276167 * c(TEX43, ALDH7A1, PHAX, GRAMD3) 0.473185999319346 4 0.032887434277142 0.91396608895351 389 0.185097683613983 2 1 1 -7.48337705359451 LTS-003 chr5 125972042 126112865 140824 * LMNB1 NA 0 NA 1.264 1 NA NA NA NA NA LTS-003 chr5 126112866 126250799 137934 * c(MARCH3, LMNB1) 0.42360987155232 2 0.0120208152801714 1.29971323853827 175 0.355140277842169 7 4 3 -7.19852529714399 LTS-003 chr5 126250800 126253607 2808 * MARCH3 NA 0 NA 0.914 1 NA NA NA NA NA LTS-003 chr5 126253608 129084010 2830403 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.437508382001242 12 0.135812259008418 1.04074343097997 1391 0.279977996210284 2 1 1 -6.87088868860526 LTS-003 chr5 129084011 129096131 12121 * KIAA1024L NA 0 NA 0.804 1 NA NA NA NA NA LTS-003 chr5 129096132 133747671 4651540 * c(KIAA1024L, MIR1289-2, MIR3936, MIR3661, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, FSTL4, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1) 0.435450351168308 77 0.088888480670438 0.91575582940284 3684 0.319233995138196 2 1 1 -6.79388865949179 LTS-003 chr5 133747672 133861305 113634 * JADE2 NA 0 NA 1.178 1 NA NA NA NA NA LTS-003 chr5 133861306 134367226 505921 * c(MIR4461, SEC24A, C5orf24, JADE2, CATSPER3, SAR1B, PITX1, TXNDC15, CAMLG, PCBD2, DDX46) 0.346892780338834 9 0.036221923993319 1.22480008596837 1016 0.29633896684477 3 2 1 -6.78518581922052 LTS-003 chr5 134367227 134368489 1263 * PITX1 NA 0 NA 0.736 1 NA NA NA NA NA LTS-003 chr5 134368490 137750805 3382316 * c(VTRNA2-1, MIR874, C5orf66, KIF20A, BRD8, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, GFRA3, PKD2L2, C5orf66-AS2, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, FAM53C, KDM3B, PITX1, TRPC7, SPOCK1, TGFBI, WNT8A, NME5, CDC23, MYOT, CXCL14, H2AFY, SMAD5-AS1, CDC25C) 0.443993579546143 46 0.0765718127777924 0.968514491957549 2412 0.233481511104039 2 1 1 -6.74536531874756 LTS-003 chr5 137750806 137750904 99 * KDM3B NA 0 NA 1.046 1 NA NA NA NA NA LTS-003 chr5 137750905 140553623 2802719 * c(SRA1, LINC01024, APBB3, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, SNORD63, SNORA74A, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, MZB1, PAIP2, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, NA NA NA NA NA NA NA NA NA LTS-003 PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2, PCDHA9, MATR3, SLC23A1) 0.37175549366738 45 0.0437599281664323 1.26669890086241 4133 0.280644539374565 3 2 1 -6.94804464920857 LTS-003 NA NA NA NA LTS-003 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.582 1 NA NA NA NA NA LTS-003 chr5 140554692 140559849 5158 * c(PCDHB8, PCDHB7) 0.356178739380625 4 0.0456097577279248 0.815600101358346 66 0.29230168181773 3 2 1 -6.74599600750472 LTS-003 chr5 140559850 140559920 71 * PCDHB8 NA 0 NA 2.423 1 NA NA NA NA NA LTS-003 chr5 140559921 140812770 252850 * c(PCDHGA12, PCDHB18P, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.392340461804191 37 0.037544668091516 1.25992633807634 1430 0.258915729384589 3 2 1 -7.35052744459826 LTS-003 chr5 140812771 140855525 42755 * c(PCDHGA12, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB4, PCDHGA8) NA 0 NA 0.743 1 NA NA NA NA NA LTS-003 chr5 140855526 142437345 1581820 * c(GNPDA1, LOC100505658, ARHGAP26-AS1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, PCDH1, PCDHGC3, PCDH12, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, ARAP3, LOC729080, NDFIP1, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.471265468868592 20 0.0222698167222388 0.989587792176864 1814 0.235351003939332 2 1 1 -8.06359687985524 LTS-003 chr5 142437346 143059588 622243 * c(MIR5197, ARHGAP26, NR3C1) 0.374626861696983 5 0.0696728067469655 1.24407840103909 338 0.273934394981764 3 2 1 -6.83038518590394 LTS-003 chr5 143059589 143853701 794113 * c(KCTD16, HMHB1, YIPF5) NA 0 NA 0.872655257777093 111 0.245965880590001 2 NA NA -5.83546859363013 LTS-003 chr5 143853702 143853772 71 * KCTD16 NA 0 NA 1.276 1 NA NA NA NA NA LTS-003 chr5 143853773 145493193 1639421 * c(PRELID2, SH3RF2, PLAC8L1, LARS, KCTD16, GRXCR2) 0.396719286415831 15 0.0641621457900291 1.29031036535857 283 0.359088972692005 3 2 1 -7.02351938531194 LTS-003 chr5 145493194 149826608 4333415 * c(PPP2R2B-IT1, CDX1, TCERG1, SPINK5, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, HMGXB3, IL17B, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PPP2R2B, RPS14, SPINK9, SLC6A7, SPINK1, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, FBXO38, TIGD6, SPINK7, CD74, JAKMIP2) 0.431710672187382 165 0.0805529013673573 0.982193149433939 4751 0.240313415608854 2 1 1 -6.75676410118795 LTS-003 chr5 149826609 149827250 642 * RPS14 NA 0 NA 1.15 1 NA NA NA NA NA LTS-003 chr5 149827251 150110217 282967 * c(SYNPO, NDST1, DCTN4, RBM22, RPS14, MYOZ3) 0.361667476511016 16 0.0438371512912659 1.29425717489399 666 0.709440753761287 3 2 1 -6.75899910869352 LTS-003 chr5 150110218 154166296 4056079 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAM114A2, ZNF300P1, SLC36A2, SLC36A1, FAT2, LARP1, CCDC69, GLRA1, GM2A, SLC36A3, GPX3, GRIA1, ANXA6, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, NMUR2, SPARC, SAP30L, SMIM3, ZNF300, HAND1) 0.445703333615772 116 0.0592057348614115 0.969790778849752 2758 0.23555845982191 2 1 1 -6.75945575274907 LTS-003 chr5 154166297 154169839 3543 * LARP1 NA 0 NA 2.151 1 NA NA NA NA NA LTS-003 chr5 154169840 157286298 3116459 * c(C5orf52, FAXDC2, SOX30, LSM11, PPP1R2P3, FAM71B, LARP1, GEMIN5, HAVCR1, CYFIP2, KIF4B, MRPL22, NIPAL4, ITK, FNDC9, THG1L, SGCD, HAVCR2, ADAM19, TIMD4, CNOT8, MED7, CLINT1) 0.375397862635145 26 0.0895216089083438 1.25773787559981 2364 0.378893788034233 3 2 1 -6.84800597843867 LTS-003 chr5 158122961 159992573 1869613 * c(MIR3142, SLU7, PWWP2A, C1QTNF2, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, ATP10B, LOC285626, LOC285627, IL12B, MIR146A, ZBED8, TTC1, CCNJL, PTTG1) 0.462435304752582 15 0.0492904897617419 0.922596668825505 990 0.204536615795886 2 1 1 -6.9643967456742 LTS-003 chr5 159992574 159992578 5 * ATP10B NA 0 NA 1.039 1 NA NA NA NA NA LTS-003 chr5 159992579 167674969 7682391 * c(NUDCD2, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, TENM2, CCNG1) 0.416382271203794 22 0.104846218039705 1.01944833619551 1123 0.284524464154423 2 1 1 -6.94835501282138 LTS-003 chr5 167674970 167687440 12471 * TENM2 0.429690709251916 2 0.0707106781186548 0.828242976433021 14 0.219862194602402 2 1 1 -6.73899150607814 LTS-003 chr5 167687441 167689404 1964 * TENM2 0.461 1 NA 0.887015014056268 11 0.126389873012042 2 2 0 -5.76487295029123 LTS-003 chr5 167689405 175388460 7699056 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, WWC1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, PANK3, CPEB4, THOC3, STC2, NA NA NA NA NA NA NA NA NA LTS-003 FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.421290923571791 90 0.0711406100058889 0.842125618933466 4403 0.201020138641839 2 1 1 -8.26555654388098 LTS-003 NA NA NA NA LTS-003 chr5 175388461 175391941 3481 * THOC3 NA 0 NA 1.346 1 NA NA NA NA NA LTS-003 chr5 175391942 175477064 85123 * THOC3 NA 0 NA 1.65926590498614 44 0.862465027633042 4 NA NA -5.76463539262918 LTS-003 chr5 175477065 180375345 4898281 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-003 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.4224379957142 121 0.0491640084260621 0.8276985382413 6919 0.201854751187955 2 1 1 -8.04337517108229 LTS-003 NA NA NA NA LTS-003 chr5 180375346 180429824 54479 * c(BTNL3, BTNL8) NA 0 NA 0.0627301904717342 67 0.0731780632852373 0 NA NA -8.9175888967585 LTS-003 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.856 1 NA NA NA NA NA LTS-003 chr5 180430826 180631828 201003 * c(BTNL3, BTNL9, OR2V1, OR2V2, TRIM7) 0.429268873978473 8 0.0541398651642207 0.845383377267761 280 0.202912886047478 2 1 1 -6.78536865389023 LTS-003 chr5 180631829 180688111 56283 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.843033158869624 249 0.166793636019043 2 NA NA -5.78488151107641 LTS-003 chr6 203389 312023 108635 * DUSP22 0.492 1 NA 0.898020435874897 27 0.30662323178097 2 2 0 -5.76751141320384 LTS-003 chr6 312024 14136428 13824405 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, MIR5689, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, EDN1, SERPINB1, PIP5K1P1, F13A1, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, FAM50B, GCNT2, GMDS, LINC01622, LY86-AS1, CAGE1, HIVEP1, MYLK4, TUBB2B, NA NA NA NA NA NA NA NA NA LTS-003 C6orf52, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, TMEM14C, SERPINB6, SERPINB9, GFOD1, ELOVL2, PAK1IP1, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, BLOC1S5, MCUR1, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, ADTRP, RIPK1, PRPF4B, GCM2, CD83, FOXQ1, CDYL, LY86, EEF1E1) 0.436741124383474 220 0.076382179596424 0.915772795033456 6957 0.292999874343774 2 1 1 -6.94257206321958 LTS-003 NA NA NA NA LTS-003 chr6 14136429 14136770 342 * CD83 NA 0 NA 0.889289287121539 8 0.125690592328941 2 NA NA -5.76448626424536 LTS-003 chr6 14136771 15373652 1236882 * c(JARID2, CD83) 0.336 1 NA 1.23311613843839 31 0.395576011210439 3 3 0 -5.80863526811399 LTS-003 chr6 15373653 19837701 4464049 * c(MIR4639, CAP2, KDM1B, RBM24, RNF144B, GMPR, MYLIP, ID4, JARID2, NHLRC1, STMND1, FAM8A1, ATXN1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, NUP153) 0.355836889803202 31 0.0827333454636817 1.24888372095029 1887 0.325551917468059 3 2 1 -6.90800219699747 LTS-003 chr6 19837702 21232633 1394932 * c(MBOAT1, E2F3, ID4, CDKAL1) 0.367850236561888 11 0.140338486913216 0.956622889540291 316 0.508075176139518 2 1 1 -6.86478577666378 LTS-003 chr6 21232634 21593978 361345 * c(CDKAL1, SOX4) NA 0 NA 1.383 1 NA NA NA NA NA LTS-003 chr6 21593979 22570245 976267 * c(HDGFL1, CASC15, PRL, SOX4, NBAT1) 0.389059551804325 2 0.014142135623731 1.41110199434323 162 0.329777769639439 5 3 2 -8.04937334140903 LTS-003 chr6 22570246 24147360 1577115 * c(NRSN1, HDGFL1) 0.496 1 NA 1.73542818397114 69 0.292307866378589 4 4 0 -5.76611245067858 LTS-003 chr6 24147361 24871021 723661 * c(NRSN1, GPLD1, KAAG1, GMNN, DCDC2, TDP2, ACOT13, MRS2, ALDH5A1, C6orf62, FAM65B, KIAA0319) 0.43092914892891 59 0.076917054005993 1.54775569679637 1175 0.819626692432147 4 2 2 -6.74458509281493 LTS-003 chr6 24871022 24874044 3023 * FAM65B NA 0 NA 1.47972102919184 13 0.254845327651187 3 NA NA -5.76461367533912 LTS-003 chr6 24874045 24875940 1896 * FAM65B NA 0 NA 1.271 1 NA NA NA NA NA LTS-003 chr6 24875941 25097298 221358 * c(CMAHP, FAM65B) 0.407 1 NA 1.16796845987088 49 0.202125091765195 3 3 0 -5.83782640799373 LTS-003 chr6 25097299 27115405 2018107 * c(LINC00240, LOC100270746, MIR3143, SLC17A4, SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, HIST1H2AA, HIST1H2BA, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, GUSBP2, HIST1H2APS1, HCG11, BTN2A3P, CARMIL1, SLC17A1, BTN1A1, ZNF322, HIST1H4I, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, NA NA NA NA NA NA NA NA NA LTS-003 HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, CMAHP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ) 0.389134652199615 86 0.0556830548657238 1.2419175382726 2088 0.384104194879342 3 2 1 -7.04538523216996 LTS-003 NA NA NA NA LTS-003 chr6 27115406 27215412 100007 * MIR3143 NA 0 NA 0.982 1 NA NA NA NA NA LTS-003 chr6 27215413 28472297 1256885 * c(ZSCAN16-AS1, LOC100131289, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZKSCAN3, ZSCAN16, OR2B2, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, PGBD1, POM121L2, ZSCAN12) 0.412887203750867 18 0.148546784074323 0.940176395563299 1462 0.21584338663948 2 1 1 -6.75265505496354 LTS-003 chr6 28472298 29079925 607628 * GPX6 0.443 1 NA 0.989451909270236 449 0.171913665060602 2 2 0 -5.77553457900031 LTS-003 chr6 29079926 29798154 718229 * character(0) 0.443615831174019 61 0.0586215891151248 0.957230595899931 854 0.248748232219239 2 1 1 -6.74810740894055 LTS-003 chr6 29798155 29855582 57428 * character(0) NA 0 NA 0.425 1 NA NA NA NA NA LTS-003 chr6 29855583 29911092 55510 * character(0) 0.435296839113903 9 0.064289924906197 0.504861537874879 51 0.250263489381985 2 1 1 -6.94521801807028 LTS-003 chr6 29911093 29911122 30 * character(0) NA 0 NA 1.207 1 NA NA NA NA NA LTS-003 chr6 29911123 30994484 1083362 * character(0) 0.453361324421639 80 0.0400092948061582 0.938433060610684 2628 0.222194841324217 2 1 1 -6.87267359466945 LTS-003 chr6 30994485 30994502 18 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-003 chr6 30994503 30996827 2325 * character(0) 0.409 1 NA 0.551352517065493 40 0.248763691802028 1 1 0 -5.76441790952088 LTS-003 chr6 30996828 31236622 239795 * character(0) 0.447348009720894 30 0.0347906877486345 0.970524171027413 470 0.264227664487957 2 1 1 -6.81610292520725 LTS-003 chr6 31236623 31236854 232 * character(0) 0.14 1 NA 1.29477538531951 3 0.630059520997818 3 3 0 -5.7644109434446 LTS-003 chr6 31236855 31238936 2082 * character(0) 0.349043260370657 16 0.0662530187991461 1.83707688787751 55 28.4608592257749 20 13 7 -6.73451157762672 LTS-003 chr6 31238937 31238942 6 * character(0) 0.371 1 NA 0.184 1 NA NA NA NA NA LTS-003 chr6 31238943 31238957 15 * character(0) 0.354 1 NA 0.209 1 NA NA NA NA NA LTS-003 chr6 31238958 31239050 93 * character(0) 0.425 1 NA 0.680427077401029 3 0.358782664018205 1 1 0 -5.76442590495138 LTS-003 chr6 31239051 31324864 85814 * character(0) 0.467408530486771 33 0.0391540759904594 0.604750841720675 89 0.257187622041891 2 1 1 -7.29520220883358 LTS-003 chr6 31324865 31324996 132 * character(0) NA 0 NA 0.707850377037767 5 0.0858708332322448 1 NA NA -5.76498026856404 LTS-003 chr6 31324997 31371205 46209 * character(0) NA 0 NA 0.832 1 NA NA NA NA NA LTS-003 chr6 31371206 31378387 7182 * character(0) 0.05 1 NA 0.8983692983891 7 0.0773495467404456 2 2 0 -5.76759426647048 LTS-003 chr6 31378388 32407709 1029322 * character(0) 0.439165683607795 137 0.066624328100856 0.933532528360618 4535 0.222354391989832 2 1 1 -6.74604653670759 LTS-003 chr6 32407710 32410389 2680 * character(0) NA 0 NA 0.863170236401991 10 0.243911732668466 2 NA NA -5.76471646048483 LTS-003 chr6 32410390 32485440 75051 * HLA-DRB5 0.205 1 NA 1.05036868759671 39 0.262358718486716 2 2 0 -5.76968137861496 LTS-003 chr6 32485441 32606779 121339 * c(HLA-DQA1, HLA-DRB5) 0.301899296597131 98 0.0998962769461214 1.14496833957954 209 0.617340208561185 4 3 1 -6.81685722701435 LTS-003 chr6 32606780 32606786 7 * HLA-DQA1 NA 0 NA 0.573 1 NA NA NA NA NA LTS-003 chr6 32606787 32609974 3188 * HLA-DQA1 0.332122266507119 6 0.0826859520515224 0.677737198198917 31 1.00318460977545 12 8 4 -6.74404636275704 LTS-003 chr6 32609975 32610002 28 * HLA-DQA1 0.4 1 NA 1.861 1 NA NA NA NA NA LTS-003 chr6 32610003 32627536 17534 * HLA-DQA1 0.449522640335203 36 0.037307176210823 0.624086629091786 111 0.635527310835154 2 1 1 -6.83573060185875 LTS-003 chr6 32627537 32628030 494 * character(0) 0.468746888926123 3 0.0185202591774521 0.897484994814145 11 0.338681346615745 2 1 1 -8.30834521467872 LTS-003 chr6 32628031 32628544 514 * character(0) 0 1 NA 0.804048345338623 11 1.38906506817944 2 2 0 -5.7644151568776 LTS-003 chr6 32628545 32632794 4250 * character(0) 0.344030694321576 18 0.139141015600082 0.770298865764838 71 0.683624452718102 3 2 1 -6.73709747355508 LTS-003 chr6 32632795 32634285 1491 * character(0) NA 0 NA 1.445 1 NA NA NA NA NA LTS-003 chr6 32634286 32725666 91381 * character(0) 0.26443965117404 14 0.135610787602925 1.16683462132268 66 0.410590552008447 4 3 1 -6.78956425217438 LTS-003 chr6 32725667 32732677 7011 * character(0) 0.406 1 NA 0.942506078633193 29 0.300426708028018 2 2 0 -5.76442617162203 LTS-003 chr6 32732678 33035512 302835 * character(0) 0.440614203584395 10 0.0558061127675295 0.886972231103389 674 0.767212139220703 2 1 1 -6.74256476229569 LTS-003 chr6 33035513 33054760 19248 * character(0) 0.456494003937053 3 0.0188237438713273 2.1063757688874 127 21.808857277779 4 2 2 -7.4671444395276 LTS-003 chr6 33054761 38545478 5490718 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, NA NA NA NA NA NA NA NA NA LTS-003 PIM1, PPARD, UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.443391386510104 143 0.0715514601171292 0.928258714387265 7317 0.35658970664957 2 1 1 -6.77205842666818 LTS-003 NA NA NA NA LTS-003 chr6 38545479 38547956 2478 * BTBD9 NA 0 NA 1.223 1 NA NA NA NA NA LTS-003 chr6 38547957 39197154 649198 * c(LOC100131047, BTBD9, DNAH8, GLO1, GLP1R, SAYSD1, KCNK5) 0.352249967455668 10 0.0535229960961745 1.23773128210887 776 0.284704282192891 3 2 1 -6.77450954805658 LTS-003 chr6 39197155 41657642 2460488 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.440077524996853 25 0.0414930917944984 0.9884185650957 1538 0.211001679015143 2 1 1 -6.77229719910533 LTS-003 chr6 41657643 41658458 816 * TFEB NA 0 NA 0.835 1 NA NA NA NA NA LTS-003 chr6 41658459 41773735 115277 * c(TOMM6, FRS3, USP49, PRICKLE4, PGC, TFEB) 0.449913532959997 10 0.035706208610455 0.890147757560764 298 0.171581109002516 2 1 1 -6.85860939382795 LTS-003 chr6 41773736 41873961 100226 * c(USP49, MED20) 0 1 NA 0.897273514996162 41 0.268156274968307 2 2 0 -5.76824428209641 LTS-003 chr6 41873962 41909656 35695 * c(BYSL, CCND3, MED20) 0.459439544662781 3 0.017058722109232 0.869067221260815 190 0.210558662288091 2 1 1 -7.8177213199034 LTS-003 chr6 41909657 42016198 106542 * CCND3 NA 0 NA 1.502 1 NA NA NA NA NA LTS-003 chr6 42016199 44084452 2068254 * c(LINC01512, DNPH1, CNPY3, SLC22A7, KLHDC3, TAF8, PTCRA, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, GNMT, RPL7L1, GUCA1A, GUCA1B, CRIP3, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, MRPL14, DLK2, SRF, TBCC, VEGFA, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, POLR1C, MAD2L1BP, CUL7) 0.337669961311003 100 0.0518532311023872 1.26436646727448 4254 0.345434742896979 3 2 1 -6.83609897009012 LTS-003 chr6 44084453 44102247 17795 * c(TMEM63B, MRPL14) NA 0 NA 2.407 1 NA NA NA NA NA LTS-003 chr6 44102248 44418136 315889 * c(MIR4647, MIR4642, CAPN11, TCTE1, SLC29A1, SPATS1, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, TMEM63B, AARS2, CDC5L) 0.425417203915514 10 0.0338212622144381 1.93751310651904 1009 0.419495553282524 4 2 2 -6.78469679617586 LTS-003 chr6 44418137 44796445 378309 * c(SUPT3H, CDC5L) NA 0 NA 0.996 1 NA NA NA NA NA LTS-003 chr6 44796446 45518835 722390 * c(MIR586, SUPT3H, RUNX2) 0.447061665148318 3 0.10646282606306 1.05837062990163 228 0.34001271721351 2 1 1 -6.77694911394867 LTS-003 chr6 45518836 45869516 350681 * CLIC5 NA 0 NA 1.168 1 NA NA NA NA NA LTS-003 chr6 45869517 46424659 555143 * c(RCAN2, ENPP4, CLIC5, ENPP5) 0.361781003178402 16 0.026398153344505 1.31483000607655 328 0.356086719545572 3 2 1 -6.80649517600487 LTS-003 chr6 46424660 46806983 382324 * c(ANKRD66, RCAN2, TDRD6, MEP1A, CYP39A1, PLA2G7, SLC25A27) 0.438281847849 4 0.0594670777265314 0.986743150383103 465 0.221232219737668 2 1 1 -6.73917175310611 LTS-003 chr6 46806984 46807111 128 * MEP1A NA 0 NA 1.238 1 NA NA NA NA NA LTS-003 chr6 46807112 51613507 4806396 * c(CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, ADGRF2, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.347792286842395 50 0.094415860393673 1.37041855281578 1804 0.375826824624115 3 2 1 -6.73615689569424 LTS-003 chr6 51613508 53159005 1545498 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.362341258870315 16 0.100638627441621 1.2065571929062 1450 0.285286129750951 3 2 1 -6.89494124378191 LTS-003 chr6 53159006 53159099 94 * ELOVL5 NA 0 NA 0.76 1 NA NA NA NA NA LTS-003 chr6 53159100 53516444 357345 * c(GCLC, KLHL31, ELOVL5, RPS16P5) 0.416 1 NA 0.839381879599161 170 0.198962179318494 2 2 0 -5.86072274628498 LTS-003 chr6 53516445 53516450 6 * KLHL31 NA 0 NA 1.215 1 NA NA NA NA NA LTS-003 chr6 53516451 56323299 2806849 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, BMP5, DST, COL21A1, MLIP) 0.441640238584228 25 0.0620151325618729 1.02294161420483 1033 0.276424153140598 2 1 1 -6.82851095810035 LTS-003 chr6 56323300 58445594 2122295 * c(BEND6, ZNF451, GUSBP4, RAB23, PRIM2, KIAA1586, DST, BAG2) 0.341671603862772 58 0.0683483236475668 1.29411039616682 1536 0.297710283668824 3 2 1 -6.78232856303833 LTS-003 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.718 1 NA NA NA NA NA LTS-003 chr6 62390154 63921853 1531700 * KHDRBS2 0.463 1 NA 0.968846678765225 87 0.240871159052508 2 2 0 -5.76569662935983 LTS-003 chr6 63921854 73951866 10030013 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.428559773983208 50 0.103159296276018 0.962598252788294 2641 0.283735361136096 2 1 1 -6.73539056037887 LTS-003 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.809 1 NA NA NA NA NA LTS-003 chr6 73952151 83828724 9876574 * c(HMGN3-AS1, LOC100506804, MB21D1, COL12A1, COX7A2, IRAK1BP1, CD109, KHDC3L, LCA5, EEF1A1, DOPEY1, MTO1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, DPPA5, IMPG1, NA, OOEP, MYO6, PHIP, DDX43, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, KHDC1, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.409233571951061 84 0.0721546158114853 0.837104471395598 3510 0.241796608388704 2 1 1 -8.28054090812804 LTS-003 chr6 83828725 83838673 9949 * DOPEY1 0.349 1 NA 0.922274752239084 31 0.347637108404418 2 2 0 -5.76449014817277 LTS-003 chr6 83838674 84025196 186523 * c(RWDD2A, DOPEY1, ME1, PGM3) 0.346163755000309 3 0.0208086520466848 0.849954735622173 427 0.197534885652348 3 2 1 -7.36377338173991 LTS-003 chr6 84025197 84055880 30684 * ME1 NA 0 NA 1.071 1 NA NA NA NA NA LTS-003 chr6 84055881 89875261 5819381 * c(SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, CNR1, RIPPLY2, PM20D2, SRSF12, CFAP206, PRSS35, C6orf163, CEP162, ZNF292, ORC3, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, AKIRIN2, RARS2, SMIM8, SNX14, LINC01590, SNORD50B, SPACA1, RNGTT, TBX18, SNAP91) 0.270622059490167 43 0.0553220611875776 1.10246243921818 2538 0.29448406128922 3 2 1 -9.21002694057021 LTS-003 chr6 89875262 89887244 11983 * c(PM20D2, GABRR1) NA 0 NA 0.774 1 NA NA NA NA NA LTS-003 chr6 89887245 95228688 5341444 * c(MIR4464, MIR4643, EPHA7, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, LYRM2, RRAGD, BACH2, TSG1, MAP3K7, GJA10, CASP8AP2) 0.36113787098261 21 0.0681296383305212 0.777495781317054 1936 0.172290340767937 2 1 1 -10.225508282877 LTS-003 chr6 96034250 97064419 1030170 * c(FUT9, UFL1, MANEA, FHL5) 0.241140283907912 9 0.0284258294123105 1.31931340466667 322 0.484493447808542 5 4 1 -7.54972525765575 LTS-003 chr6 97064420 97245923 181504 * c(GPR63, FHL5) NA 0 NA 1.89 1 NA NA NA NA NA LTS-003 chr6 97245924 98472534 1226611 * c(MIR2113, KLHL32, MMS22L, NDUFAF4, GPR63) 0.188594381370438 9 0.0529197505663056 1.83087770239383 420 0.513565923974698 6 5 1 -7.02736680890707 LTS-003 chr6 99282582 100404095 1121514 * c(TSTD3, PNISR, FBXL4, COQ3, POU3F2, PRDM13, MCHR2, FAXC, USP45, CCNC) 0.385836014150516 21 0.0507883563708961 0.794293063683331 824 0.19733854164277 2 1 1 -7.80031067864269 LTS-003 chr6 100404096 100832862 428767 * c(MCHR2-AS1, MCHR2) NA 0 NA 1.792 1 NA NA NA NA NA LTS-003 chr6 100832863 102517969 1685107 * c(ASCC3, GRIK2, SIM1) 0.267754431020807 11 0.0373000121862032 1.22153290795576 624 0.303741311606887 4 3 1 -7.92777117622409 LTS-003 chr6 105175931 105547159 371229 * c(LIN28B-AS1, BVES, LIN28B, HACE1) 0.180444921829454 2 0.226981276760882 0.765391626299225 346 0.170326376725276 2 2 0 -7.20791058946109 LTS-003 chr6 105547160 105725665 178506 * c(BVES, BVES-AS1, PREP, POPDC3) 0.393 1 NA 0.775095883215351 139 0.161021889505776 2 2 0 -5.94803550596531 LTS-003 chr6 105725666 112575096 6849431 * c(LOC100422737, LOC100996634, TRAF3IP2, SEC63, GTF3C6, SLC16A10, AIM1, CCDC162P, AK9, FOXO3, CDK19, LACE1, FYN, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, LINC00222, LAMA4, GSTM2P1, TUBE1, C6orf203, CDC40, SOBP, QRSL1, PREP, PDSS2, BEND3, REV3L, FAM229B, PRDM1, TRAF3IP2-AS1, MICAL1, SMPD2, NR2E1, METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, NA NA NA NA NA NA NA NA NA LTS-003 FIG4) 0.39645311743903 71 0.0470682367789668 0.767157739740998 5012 0.200036278098594 2 1 1 -10.1046318416607 LTS-003 NA NA NA NA LTS-003 chr6 112575097 117923599 5348503 * c(TRAPPC3L, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, GPRC6A, RFX6, TSPYL4, FRK, VGLL2, FAM26E, LINC01268, FLJ34503, DCBLD1, DSE, HDAC2, RSPH4A, KPNA5, LAMA4, MARCKS, FAM26F, RFPL4B, RWDD1, GOPC, ROS1, TSPYL1, TPI1P3) 0.369417931224962 39 0.0768704766177405 0.821733869845337 2402 0.216432146494733 2 1 1 -8.45440474993578 LTS-003 chr6 117923600 118031785 108186 * c(NUS1, GOPC) NA 0 NA 0.79337316416264 67 0.149171956906359 2 NA NA -5.86876756302302 LTS-003 chr6 118031786 118228691 196906 * c(NUS1, SLC35F1) NA 0 NA 0.598 1 NA NA NA NA NA LTS-003 chr6 118228692 118637042 408351 * SLC35F1 0.247 1 NA 0.660538437699512 69 0.133799169719254 1 1 0 -6.10407786917302 LTS-003 chr6 118637043 150185168 31548126 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, LOC100287632, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, MIR5695, UST, TRDN, CITED2, HBS1L, SMPDL3A, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, CLVS2, TAAR1, STXBP5, NCOA7, HINT3, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, OLIG3, TXLNB, EPB41L2, NA NA NA NA NA NA NA NA NA LTS-003 EYA4, FABP7, TBC1D32, SLC35F1, TAB2, SASH1, HEY2, HEBP2, BRD7P3, FUCA2, TMEM244, MCM9, SHPRH, ASF1A, CCDC28A, MOXD1, GJA1, PDE7B, LINC00326, PHACTR2-AS1, LOC285762, GRM1, HIVEP2, TAAR6, HSF2, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, ARG1, HMGA1P7, SUMO4, CENPW, SOGA3, CEP85L, THEMIS, SAMD5, LAMA2, MAN1A1, MAP3K5, FLJ46906, MYB, NMBR, HDDC2, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 PLAGL1, PLN, IL20RA, AHI1, VNN3, PKIB, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, SERINC1, PTPRK, ABRACL, PBOV1, SNORA33, TRMT11, RPS12, PERP, LOC643623, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, MIR548B, TCF21, TNFAIP3, TPD52L1, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, RNF217-AS1, EPM2A, FAM184A, ADGB, RNF146, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, RSPO3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.228785149307392 235 0.0781922223796072 0.635710242861527 13646 0.220721326855987 1 1 0 -10.6291795669923 LTS-003 NA NA NA NA LTS-003 chr6 150185169 150204484 19316 * c(RAET1E-AS1, LRP11) NA 0 NA 0.907 1 NA NA NA NA NA LTS-003 chr6 150204485 151362926 1158442 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C) 0.207454813339744 38 0.0453333237455712 0.690889272143467 843 0.229430944504464 1 1 0 -8.20787180482332 LTS-003 chr6 151362927 151363012 86 * MTHFD1L NA 0 NA 0.534 1 NA NA NA NA NA LTS-003 chr6 151363013 151941134 578122 * c(MTHFD1L, RMND1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.183805644357498 5 0.0181052478580107 0.606778361640185 437 0.464762796482357 1 1 0 -8.67241164712286 LTS-003 chr6 151941135 154476227 2535093 * c(ESR1, SYNE1, IPCEF1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, CCDC170, MYCT1) 0.227671401357576 27 0.049712707393113 0.687467678989514 1629 0.186037108001791 1 1 0 -9.45151547528068 LTS-003 chr6 154476228 160229972 5753745 * c(LOC100129518, C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, ACAT2, GTF2H5, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.226965521820315 66 0.0434541367957299 0.610038752455645 3318 0.20930984272687 1 1 0 -8.82915491609151 LTS-003 chr6 160229973 160229990 18 * PNLDC1 NA 0 NA 0.636 1 NA NA NA NA NA LTS-003 chr6 160229991 167590641 7360651 * c(AIRN, LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, PNLDC1, C6orf118, GPR31, PACRG-AS1, PRR18, IGF2R, DKFZp451B082, TCP10L2, LPA, MAS1, MAP3K4, LINC00602, PARK2, MPC1, PLG, AGPAT4, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, T, LOC729603, AGPAT4-IT1, LPAL2, RNASET2, LINC00473, QKI) 0.215177446375477 97 0.0616887904959421 0.656182579440831 3002 0.207121667008851 1 1 0 -9.22996480782859 LTS-003 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.357 1 NA NA NA NA NA LTS-003 chr6 167591885 167595605 3721 * TCP10L2 0.302388653272415 4 0.0869137503505631 0.460847866437676 84 0.312389084619371 7 5 2 -6.81279168194087 LTS-003 chr6 167595606 170070748 2475143 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.198167535184469 54 0.078325498069267 0.686580729793377 1425 0.240959872773067 1 1 0 -7.8804865486723 LTS-003 chr6 170070749 170890384 819636 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.201642124043527 9 0.0888000250250215 0.610190607466007 624 0.491063098681161 1 1 0 -6.978970605931 LTS-003 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.590966877259488 45 0.152950807434775 1 NA NA -5.76462293795108 LTS-003 chr7 193047 227931 34885 * FAM20C 0.435 1 NA 0.727704582773892 37 0.15318786185929 1 1 0 -5.82362783511039 LTS-003 chr7 227932 5346498 5118567 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ZNF890P, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, NA NA NA NA NA NA NA NA NA LTS-003 TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.411235627743456 167 0.0724424327820602 0.832515646739899 4690 0.225818116640693 2 1 1 -7.82089784128835 LTS-003 NA NA NA NA LTS-003 chr7 5346499 5346637 139 * TNRC18 NA 0 NA 0.616 1 NA NA NA NA NA LTS-003 chr7 5346638 6656897 1310260 * c(ANKRD61, RNF216-IT1, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, ZNF815P, CCZ1, PMS2, RNF216, ZNF853, ZDHHC4, RAC1, ACTB, OCM, FSCN1, MIR589, C7orf26, AIMP2, FBXL18, USP42, TNRC18, FAM220A, CYTH3) 0.391750871269076 36 0.103413283203161 0.772756229877359 1880 0.246232109846772 2 1 1 -7.38943618609501 LTS-003 chr7 6656898 6713431 56534 * ZNF853 0.49 1 NA 0.70486810084928 35 0.197328919626618 1 1 0 -5.80898864464345 LTS-003 chr7 6713432 6838579 125148 * c(CCZ1B, PMS2CL, RSPH10B2, ZNF12) 0.447549909839137 5 0.0354866171957824 0.787657659666135 250 0.23234221571815 2 1 1 -6.86920460756856 LTS-003 chr7 6838580 6838593 14 * CCZ1B NA 0 NA 1.164 1 NA NA NA NA NA LTS-003 chr7 6838594 6863802 25209 * CCZ1B 0.411329747016752 3 0.0543537793840808 1.1134419260799 52 0.51004949926882 5 3 2 -6.77514941263897 LTS-003 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.758 1 NA NA NA NA NA LTS-003 chr7 6864270 11022350 4158081 * c(LOC100131257, GLCCI1, PER4, CCZ1B, NXPH1, ICA1, COL28A1, NDUFA4, MIOS, C1GALT1, RPA3, UMAD1, PHF14) 0.41427026912376 18 0.0681427039717031 0.806466623612207 822 0.221273241721985 2 1 1 -8.03436841939494 LTS-003 chr7 11022351 17362171 6339821 * c(ISPD-AS1, LRRC72, ARL4A, AGR2, AGR3, DGKB, AHR, ETV1, VWDE, THSD7A, SOSTDC1, TSPAN13, BZW2, AGMO, MEOX2, TMEM106B, ANKMY2, ISPD, SCIN, PHF14) 0.423259213660658 53 0.0940965250326603 0.895264501829557 1867 0.229681717471629 2 1 1 -7.07510983455223 LTS-003 chr7 17362172 18498432 1136261 * c(AHR, PRPS1L1, SNX13, HDAC9) 0.445401110424039 9 0.044533695108311 1.1208943239557 425 0.27823456051671 2 1 1 -6.97378707312546 LTS-003 chr7 18498433 20698270 2199838 * c(MIR3146, MACC1-AS1, TWISTNB, FERD3L, TMEM196, ABCB5, MACC1, ITGB8, TWIST1, HDAC9) 0.41246869308171 20 0.0347082198667086 1.40470121016433 766 0.407115465074422 4 2 2 -7.33669956051218 LTS-003 chr7 20698271 20699016 746 * ABCB5 0.166 1 NA 1.62790550902192 13 0.390894372249602 4 4 0 -5.76442719219807 LTS-003 chr7 20699017 20739767 40751 * ABCB5 0.338908662099222 5 0.0781101785940859 1.44799193169328 56 0.773846583674655 6 4 2 -6.74823749435816 LTS-003 chr7 20739768 20744313 4546 * ABCB5 NA 0 NA 0.846 1 NA NA NA NA NA LTS-003 chr7 20744314 23872409 3128096 * c(LOC100506178, KLHL7-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, SP8, RPL23P8, STEAP1B, RPS2P32, TRA2A, ABCB5, FAM221A, IL6, TOMM7, CDCA7L, KLHL7, STK31, SP4, SNORD93, FAM126A, DNAH11, CCDC126, RAPGEF5) 0.30157051935743 59 0.0751354164206291 1.16295988117007 2140 0.423810648494992 3 2 1 -7.24103185930167 LTS-003 chr7 23872410 23943836 71427 * STK31 NA 0 NA 1.32396844360018 5 0.136721614969982 3 NA NA -5.76593982429066 LTS-003 chr7 23943837 24324693 380857 * c(NPY, STK31) NA 0 NA 0.832 1 NA NA NA NA NA LTS-003 chr7 24324694 24324759 66 * NPY 0.444 1 NA 0.749 1 NA NA NA NA NA LTS-003 chr7 24324760 30880542 6555783 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CBX3, C7orf31, CRHR2, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, OSBPL3, GARS, C7orf71, SNX10, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NA NA NA NA NA NA NA NA NA LTS-003 NPY, MPP6, CYCS, CPVL, FKBP14, NPVF, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.408882171900256 88 0.104491273952845 0.876517573619113 3819 0.219526537317945 2 1 1 -7.37962699462581 LTS-003 NA NA NA NA LTS-003 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.172 1 NA NA NA NA NA LTS-003 chr7 30882039 38299826 7417788 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, INMT-FAM188B, AOAH-IT1, PPP1R17, FKBP9, ADCYAP1R1, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, GHRHR, BBS9, AOAH, GPR141, AQP1, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, TBX20, RP9, NEUROD6, HERPUD2, SFRP4, MIR550A2, EEPD1, STARD3NL, FAM188B, ELMO1, SEPT7) 0.427593223502039 66 0.0710337980555768 0.951581036654876 3427 0.464583314903106 2 1 1 -6.74008178110548 LTS-003 chr7 38299827 38301699 1873 * TARP NA 0 NA 1.163 1 NA NA NA NA NA LTS-003 chr7 38301700 38402496 100797 * c(TRG-AS1, TARP) 0.419349911404638 4 0.237333099250821 1.32263793915165 91 1.43941797710759 4 2 2 -6.73777333778934 LTS-003 chr7 38402497 38402580 84 * TRG-AS1 NA 0 NA 0.967 1 NA NA NA NA NA LTS-003 chr7 38402581 42834757 4432177 * c(TRG-AS1, POU6F2-AS1, POU6F2, MPLKIP, VPS41, AMPH, GLI3, INHBA-AS1, FAM183BP, LINC00265, INHBA, YAE1D1, RALA, LOC646999, SUGCT, CDK13) 0.431531836550496 26 0.0938162278893402 0.95502647345271 1388 0.249907880099046 2 1 1 -6.73478437548978 LTS-003 chr7 42834758 42948850 114093 * character(0) NA 0 NA 1.633 1 NA NA NA NA NA LTS-003 chr7 42948851 43946594 997744 * c(MIR3943, LOC100506895, URGCP-MRPS24, HECW1, URGCP, COA1, PSMA2, BLVRA, MRPS24, MRPL32, C7orf25, STK17A) 0.345790504259397 13 0.058096736304467 1.31937438387271 685 1.58233908455686 3 2 1 -6.74163438797765 LTS-003 chr7 43946595 55214489 11267895 * c(DDC-AS1, C7orf72, MIR4649, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, C7orf57, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, TMED4, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, GCK, POLM, POM121L12, VSTM2A-OT1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HPVC1, HUS1, IGFBP1, IGFBP3, VWC2, RASA4CP, C7orf65, LINC01446, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, PURB, MYL7, FIGNL1, MYO1G, SEPT7P2, TNS3, NA NA NA NA NA NA NA NA NA LTS-003 SNORA5B, SNORA5C, SNORA9, UPP1, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, TBRG4, H2AFV) 0.443759252082265 71 0.0905825368150789 0.972060674422042 5545 0.216986033433256 2 1 1 -6.76125567529191 LTS-003 NA NA NA NA LTS-003 chr7 55214490 55218898 4409 * EGFR NA 0 NA 1.562 1 NA NA NA NA NA LTS-003 chr7 55218899 55540401 321503 * c(EGFR-AS1, EGFR, LANCL2, VOPP1) 0.351271784846848 14 0.0477898904201885 1.36867279679888 451 0.292386326361735 3 2 1 -6.73366532660312 LTS-003 chr7 55540402 55540646 245 * VOPP1 NA 0 NA 1.117 1 NA NA NA NA NA LTS-003 chr7 55540647 57532512 1991866 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.41874316706457 28 0.107660419249675 0.971472565341248 786 0.254897826176047 2 1 1 -6.74810734382213 LTS-003 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.44410683790214 15 0.501567144059497 3 NA NA -5.76441652045277 LTS-003 chr7 62758725 63023528 264804 * ZNF733P 0.3 1 NA 0.880061811925848 7 0.471318363741537 2 2 0 -5.76983140116128 LTS-003 chr7 63023529 64168953 1145425 * c(LOC100128885, LINC01005, ZNF679, ZNF680, ZNF727, ZNF107, LOC641746, YWHAEP1, ZNF736, ZNF735) 0.355552543931044 9 0.165100558583078 0.912816939243597 322 0.203489702861549 2 1 1 -6.90874454315473 LTS-003 chr7 64168954 64168968 15 * ZNF107 NA 0 NA 1.108 1 NA NA NA NA NA LTS-003 chr7 64168969 64643425 474457 * c(ZNF273, ERV3-1, ZNF117, ZNF107, CCT6P3, ZNF138) 0.327666527327567 6 0.0385508322435024 1.22334523570293 281 0.372072986789862 3 2 1 -6.99788699145614 LTS-003 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.811 1 NA NA NA NA NA LTS-003 chr7 64643764 65160072 516309 * c(ZNF92, LOC441242, INTS4P2) 0.379261978071091 5 0.0404623281584241 0.702471380578318 103 0.315430509374174 2 1 1 -7.96807694172134 LTS-003 chr7 65160073 66094119 934047 * c(VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, CCT6P1, INTS4P2, SNORA22, TPST1) 0.313561282465718 6 0.0327459921211741 1.36106844783271 394 0.731545204004948 7 5 2 -7.4438202795805 LTS-003 chr7 66094120 66276419 182300 * c(KCTD7, RABGEF1, GTF2IRD1P1) 0.455039885044897 10 0.0217776643987978 1.65785698467611 214 0.345092268621726 4 2 2 -7.23482274147485 LTS-003 chr7 66276420 66406736 130317 * c(RABGEF1, TMEM248, GTF2IRD1P1) NA 0 NA 1.23 1 NA NA NA NA NA LTS-003 chr7 66406737 69064988 2658252 * c(MIR4650-2, AUTS2, SBDS, PMS2P4, TMEM248, TYW1, STAG3L4) 0.383557511457253 9 0.0691540149071461 1.29742051047641 328 0.295898683328399 3 2 1 -6.8888552577017 LTS-003 chr7 69064989 69364253 299265 * AUTS2 NA 0 NA 1.088 1 NA NA NA NA NA LTS-003 chr7 69364254 72242556 2878303 * c(MIR3914-1, MIR3914-2, MIR4650-1, AUTS2, TYW1B, WBSCR17, CALN1) 0.417125266790575 10 0.15080336718905 1.07531789399003 563 0.283601990393808 2 1 1 -7.00442887082974 LTS-003 chr7 72242557 72267371 24815 * TYW1B NA 0 NA 1.246 1 NA NA NA NA NA LTS-003 chr7 72267372 73280283 1012912 * c(MIR4284, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, NSUN5P2, TBL2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, MLXIPL, LOC541473, NSUN5, NCF1B, STX1A, FZD9, ABHD11, DNAJC30, FKBP6, BAZ1B, BCL7B, POM121) 0.347935858666007 12 0.118083271850458 1.28442025049206 1233 0.405103353245315 3 2 1 -6.74565103185338 LTS-003 chr7 73280284 73442120 161837 * character(0) NA 0 NA 0.849 1 NA NA NA NA NA LTS-003 chr7 73442121 79833102 6390982 * c(POM121C, PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR4651, MIR548AU, MAGI2-AS2, CCL26, FGL2, DTX2, SSC4D, NSUN5P1, ELN, SRRM3, RSBN1L, POMZP3, GNAI1, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, MDH2, DTX2P1-UPK3BP1-PMS2P11, STAG3L2, SPDYE5, STYXL1, PMS2P5, PMS2P3, GSAP, STAG3L1, POR, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1C, SNORA14A, MIR590, GATSL2, NA NA NA NA NA NA NA NA NA LTS-003 EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, TMEM120A, GTF2IRD2, TMEM60, GTF2IRD1, MAGI2) 0.418630348972388 64 0.100386238227144 0.960585194063696 3280 0.236571672136165 2 1 1 -6.74768542513009 LTS-003 NA NA NA NA LTS-003 chr7 79833103 86542304 6709202 * c(SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, CACNA2D1, CD36, SEMA3E) 0.439542259341388 34 0.0880640465362291 1.08738269637092 2003 0.285922343335693 2 1 1 -7.41450918957716 LTS-003 chr7 86542305 86978347 436043 * c(TP53TG1, KIAA1324L, CROT, TMEM243, DMTF1) 0.382121571882874 8 0.0630417945266698 1.30398719176122 250 0.289998172020274 3 2 1 -6.86644672174009 LTS-003 chr7 86978348 86983715 5368 * CROT 0.397 1 NA 1.69878746198862 7 0.386355930149784 4 4 0 -5.76443469172746 LTS-003 chr7 86983716 87436854 453139 * c(RUNDC3B, ABCB1, ABCB4, CROT) 0.312384822354431 7 0.0502915310488565 1.30411703125216 450 0.348484684502545 3 2 1 -7.09898318354164 LTS-003 chr7 87436855 87445414 8560 * RUNDC3B NA 0 NA 0.811 1 NA NA NA NA NA LTS-003 chr7 87445415 87905261 459847 * c(DBF4, RUNDC3B, ADAM22, SLC25A40, SRI) 0 2 0 0.984547419745371 778 0.316140770987166 0 0 0 -Inf LTS-003 chr7 87905262 87906251 990 * STEAP4 0.432 1 NA 0.932807900538709 21 0.202906253277339 2 2 0 -5.76442216758466 LTS-003 chr7 87906252 91502731 3596480 * c(LOC101409256, C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, CDK14, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.449108898452292 31 0.0532909441761243 1.06831824095927 1064 0.292105502457388 2 1 1 -7.05398274100153 LTS-003 chr7 91502732 91502797 66 * MTERF1 NA 0 NA 0.956 1 NA NA NA NA NA LTS-003 chr7 91502798 91842530 339733 * c(AKAP9, CYP51A1, LRRD1, MTERF1, KRIT1) 0.461426992438471 20 0.0489559146472351 0.92474637524008 624 0.231541622911987 2 1 1 -6.9167802008558 LTS-003 chr7 91842531 91842554 24 * KRIT1 0.314 1 NA 2.099 1 NA NA NA NA NA LTS-003 chr7 91842555 92100352 257798 * c(ANKIB1, GATAD1, KRIT1) 0.395622134159927 2 0.0183847763108502 1.19815156033229 299 0.278899432136286 5 3 2 -7.42665109840984 LTS-003 chr7 92100353 92116322 15970 * character(0) NA 0 NA 0.779 1 NA NA NA NA NA LTS-003 chr7 92116323 100321092 8204770 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, COL1A2, CYP3A7, CYP3A4, CYP3A5, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, ZSCAN25, FAM200A, PPP1R35, GPC2, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, FBXO24, GNB2, GNG11, GNGT1, NA NA NA NA NA NA NA NA NA LTS-003 DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, PMS2P1, PON1, PON2, PON3, SAMD9, ZCWPW1, C7orf43, PPP1R9A, VPS50, BAIAP2L1, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ZSCAN21, ZNF655, PVRIG, GAL3ST4, SHFM1, TFPI2, CALCR, OR2AE1, TSC22D4, TRRAP, RBM48, ZNF394, MYH16, NA, BUD31, SGCE, TRIM4, AP4M1, ATP5J2) 0.446506139813998 181 0.0815121697934251 0.966254217966201 8553 0.233425198013636 2 1 1 -6.75000750791585 LTS-003 NA NA NA NA LTS-003 chr7 100321093 100321191 99 * EPO NA 0 NA 0.931 1 NA NA NA NA NA LTS-003 chr7 100321192 100344353 23162 * c(EPO, ZAN) NA 0 NA 0.504340448566634 38 0.167178716733296 1 NA NA -5.77017179203824 LTS-003 chr7 100344354 100344359 6 * ZAN 0.488 1 NA 1.347 1 NA NA NA NA NA LTS-003 chr7 100344360 100488658 144299 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.462840969115144 34 0.0369264456533769 0.999966734664619 661 2.17948315932211 2 1 1 -7.07094790884338 LTS-003 chr7 100488659 100547265 58607 * ACHE 0.333 1 NA 1.01996891340141 53 0.179605320404385 2 2 0 -5.76838874578097 LTS-003 chr7 100547266 100549499 2234 * character(0) NA 0 NA 0.973639203499151 4 0.294557719301328 2 NA NA -5.76441313859877 LTS-003 chr7 100549500 100549505 6 * character(0) 0.231 1 NA 3.017 1 NA NA NA NA NA LTS-003 chr7 100549506 100550184 679 * character(0) 0.386606681485748 23 0.0628959238202412 1.82033464203277 35 0.405557945377505 13 8 5 -6.7360835878829 LTS-003 chr7 100550185 100550203 19 * character(0) 0.072 1 NA 1.66489545569066 3 0.562819983061488 4 4 0 -5.76441023367256 LTS-003 chr7 100550204 100550744 541 * character(0) 0.259160927486414 11 0.123197476361402 1.81082501480247 20 0.471691458030509 8 6 2 -6.73394684403884 LTS-003 chr7 100550745 100550766 22 * character(0) 0.113 1 NA 0.15 1 NA NA NA NA NA LTS-003 chr7 100550767 100551104 338 * character(0) 0.274387412468548 8 0.0999153212904379 0.541651227167881 44 0.265314774756358 4 3 1 -6.7370845293874 LTS-003 chr7 100551105 100551122 18 * character(0) 0.121 1 NA 1.746 1 NA NA NA NA NA LTS-003 chr7 100551123 100551397 275 * character(0) 0.252192181179724 18 0.0916629411007624 1.76679405710553 24 0.498793702454928 20 15 5 -6.73515146767214 LTS-003 chr7 100551398 100551433 36 * character(0) 0.34 1 NA 1.94283070662572 3 0.433178946856839 4 4 0 -5.76441126483235 LTS-003 chr7 100551434 100552867 1434 * character(0) 0.354496609700148 48 0.0762213991238495 1.91451751151706 76 0.600274725409052 3 2 1 -6.73365532708699 LTS-003 chr7 100552868 100552894 27 * character(0) NA 0 NA 1.024 1 NA NA NA NA NA LTS-003 chr7 100552895 100615525 62631 * MUC12 0.367043874626149 32 0.0795012426358555 1.12298906415469 108 0.365613265817746 3 2 1 -6.76276334216951 LTS-003 chr7 100615526 100634307 18782 * MUC12 0.45 1 NA 1.18544811407887 24 0.698141440550905 3 3 0 -5.76483990972523 LTS-003 chr7 100634308 100687115 52808 * c(MUC12, MUC17) 0.432 1 NA 1.14794030503781 280 0.190540824057105 3 3 0 -5.78908587282057 LTS-003 chr7 100687116 100691170 4055 * MUC17 NA 0 NA 0.861 1 NA NA NA NA NA LTS-003 chr7 100691171 102114206 1423036 * c(LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.425208631153187 25 0.154896126484816 0.967055546590244 1712 0.218854342792709 2 1 1 -6.73602461836365 LTS-003 chr7 102114207 102114907 701 * POLR2J NA 0 NA 0.086 1 NA NA NA NA NA LTS-003 chr7 102114908 102319655 204748 * c(RASA4B, SPDYE2B, RASA4, POLR2J2, POLR2J, POLR2J3) NA 0 NA 0.510726585882636 43 0.314753522019178 1 NA NA -5.77560758683196 LTS-003 chr7 102319656 102343763 24108 * RASA4 NA 0 NA 0.806 1 NA NA NA NA NA LTS-003 chr7 102343764 123673286 21329523 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf66, RNF133, THAP5, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, HYAL4, TSPAN12, HYALP1, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, KCND2, SLC26A5, LHFPL3, RNF148, FEZF1, LAMB1, NA NA NA NA NA NA NA NA NA LTS-003 LINC00998, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, ORC5, PNPLA8, TAS2R16, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, PUS7, ING3, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, PTPRZ1, RINT1, TMEM168, LHFPL3-AS1, SLC13A1, SPAM1, SRPK2, SYPL1, LHFPL3-AS2, TMEM229A, WNT2, ST7, CBLL1, CPED1, CAPZA2, ARMC10, IMMP2L, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, PMPCB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 DOCK4) 0.438213751708303 141 0.106119765645179 0.975758555578501 9787 0.24891821288273 2 1 1 -6.78704268157484 LTS-003 NA NA NA NA LTS-003 chr7 123673287 127963754 4290468 * c(C7orf77, MGC27345, ZNF800, POT1, SND1, SND1-IT1, GPR37, GRM8, FSCN3, ARF5, LEP, MIR129-1, PAX4, RBM28, LRRC4, MIR592, MIR593, TMEM229A, GCC1) 0.399501516510091 12 0.0449797092300989 1.31663566201143 993 0.309756003669596 3 2 1 -7.34805703351015 LTS-003 chr7 127963755 127964573 819 * RBM28 NA 0 NA 1.011 1 NA NA NA NA NA LTS-003 chr7 127964574 128462247 497674 * c(HILPDA, FAM71F2, IMPDH1, PRRT4, LINC01000, RBM28, METTL2B, OPN1SW, CCDC136, CALU, FAM71F1) 0.356180348019954 13 0.0419451717829053 1.1628755716294 792 0.297373895760147 3 2 1 -6.81786206602814 LTS-003 chr7 128462248 128470446 8199 * character(0) NA 0 NA 0.734 1 NA NA NA NA NA LTS-003 chr7 128470447 130562320 2091874 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, KLHDC10, FLNC, AHCYL2, TNPO3, COPG2, TPI1P2, MESTIT1, TSPAN33, IRF5, KCP, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MIR335, NRF1, CPA4, ZC3HC1, STRIP2, NA, SMO, UBE2H, TMEM209, ATP6V1F, CPA5, CEP41) 0.463939414366403 15 0.0294526253983774 0.951353604535528 2554 0.23167798093685 2 1 1 -7.28726360054735 LTS-003 chr7 130562321 130827557 265237 * c(LINC-PINT, MKLN1, NA) NA 0 NA 1.385 1 NA NA NA NA NA LTS-003 chr7 130827558 134576465 3748908 * c(LRGUK, AKR1B1, FLJ40288, MKLN1, AKR1B15, PODXL, CHCHD3, AKR1B10, EXOC4, BPGM, CALD1, SLC35B4, PLXNA4) 0.3404356066649 29 0.0490854537862187 1.48723593005737 1472 0.33147883827571 3 2 1 -6.93304688420359 LTS-003 chr7 134576466 134605293 28828 * CALD1 NA 0 NA 1.062 1 NA NA NA NA NA LTS-003 chr7 134605294 141618802 7013509 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, TMEM140, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, AKR1D1, NA NA NA NA NA NA NA NA NA LTS-003 BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.416275429957958 107 0.0902832871852994 1.08021554740282 5465 0.266605425388931 2 1 1 -7.48331864346297 LTS-003 NA NA NA NA LTS-003 chr7 141618803 141618891 89 * OR9A4 NA 0 NA 1.723 1 NA NA NA NA NA LTS-003 chr7 141618892 142008491 389600 * c(MOXD2P, OR9A4, PRSS58, CLEC5A, TAS2R38, NA, MGAM, MGAM2) 0.449931075613771 21 0.0363709722037729 1.15572533929671 806 0.252981895503518 2 1 1 -6.96440326050479 LTS-003 chr7 142008492 142008502 11 * character(0) 0.295 1 NA 1.704 1 NA NA NA NA NA LTS-003 chr7 142008503 142510350 501848 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.329792771658789 88 0.100386707224915 1.33742523400956 525 1.73517876155382 3 2 1 -6.76405193574256 LTS-003 chr7 142510351 142510446 96 * character(0) 0.416 1 NA 1.2438664185637 3 0.266845148603705 3 3 0 -5.76441636791851 LTS-003 chr7 142510447 143305591 795145 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.423238249893536 24 0.048240171335048 1.10536272310298 1311 0.244927669618612 2 1 1 -6.9183250131477 LTS-003 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.0890930848806015 41 0.16380915799766 0 NA NA -5.88955765699613 LTS-003 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.726 1 NA NA NA NA NA LTS-003 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.377613110496315 8 0.143130247876341 1.28755365008642 283 0.708323632507269 3 2 1 -6.7527150353086 LTS-003 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.311 1 NA NA NA NA NA LTS-003 chr7 143883365 143972021 88657 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.622192794902197 49 0.141861287883622 1 NA NA -5.7919454109572 LTS-003 chr7 143972022 143973427 1406 * ARHGEF34P NA 0 NA 1.025 1 NA NA NA NA NA LTS-003 chr7 143973428 144074399 100972 * c(ARHGEF34P, ARHGEF5) 0.299249778107012 3 0.107108978770845 0.875383792997261 111 0.547008202373944 4 3 1 -6.86492635511624 LTS-003 chr7 144074400 158738878 14664479 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, NA NA NA NA NA NA NA NA NA LTS-003 GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, XRCC2, MIR671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.423581561753825 266 0.0679258568697799 1.07863689298881 9434 0.490350671174732 2 1 1 -7.20658127246668 LTS-003 NA NA NA NA LTS-003 chr7 158738879 159025951 287073 * c(LINC00689, WDR60, VIPR2) NA 0 NA 1.05920908636854 140 0.159853218901001 2 NA NA -5.82869715877526 LTS-003 chr8 182757 565232 382476 * c(TDRP, ZNF596, FBXO25) 0.397 1 NA 0.998482712278794 243 0.196760083838457 2 2 0 -5.77347881229684 LTS-003 chr8 565233 4852482 4287250 * c(ERICH1, CLN8, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.453315362475749 30 0.0364184492843375 0.988621241466164 1533 0.233131572193438 2 1 1 -6.93192512644895 LTS-003 chr8 6264045 6500784 236740 * c(LOC100287015, ANGPT2, MCPH1) 0.394144981157028 3 0.0242693221990232 1.38183805420896 242 0.389319521285524 5 3 2 -6.97828795991034 LTS-003 chr8 6500785 6500996 212 * MCPH1 NA 0 NA 0.925 1 NA NA NA NA NA LTS-003 chr8 6500997 21964380 15463384 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, C8orf74, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB107A, DEFB109P1, NA NA NA NA NA NA NA NA NA LTS-003 DEFB130, NEIL2, GATA4, FGF20, GFRA2, FAM86B3P, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, AGPAT5, CSGALNACT1, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, USP17L4, USP17L3, FAM160B2, LOC649352, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MFHAS1, RP1L1) 0.439945657301416 220 0.0793525319409926 0.994028345914424 6890 0.462133429639063 2 1 1 -6.78780863348836 LTS-003 NA NA NA NA LTS-003 chr8 21964381 21964479 99 * NUDT18 NA 0 NA 1.024 1 NA NA NA NA NA LTS-003 chr8 21964480 28425349 6460870 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, LOC100507156, SORBS3, PNMA2, ADAM28, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, EGR3, R3HCC1, LGI3, EPHX2, PTK2B, TRIM35, RHOBTB2, SLC39A14, LOC254896, ADAMDEC1, GNRH1, LOC286059, SCARA5, LOC389641, NUGGC, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2R2A, CCDC25, PPP3CC, HR, PBK, ZNF395, NA NA NA NA NA NA NA NA NA LTS-003 BIN3, CCAR2, PDLIM2, SFTPC, EBF2, BMP1, POLR3D, BNIP3L, STC1, FZD3, NUDT18, DOCK5, BIN3-IT1, REEP4, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4, PHYHIP) 0.452866878664181 181 0.0554117446823465 0.950504731333659 6598 0.224412840140965 2 1 1 -6.80726812749098 LTS-003 NA NA NA NA LTS-003 chr8 28425350 28427456 2107 * FZD3 NA 0 NA 1.39371370244102 53 0.576157308863933 3 NA NA -5.76441261068352 LTS-003 chr8 28427457 28427488 32 * FZD3 NA 0 NA 1.057 1 NA NA NA NA NA LTS-003 chr8 28427489 30361989 1934501 * c(RBPMS-AS1, MIR3148, MIR548O2, DCTN6, RBPMS, DUSP4, EXTL3, KIF13B, LEPROTL1, FAM183CP, SARAF, INTS9, LINC00589, MBOAT4, HMBOX1, FZD3) 0.425540833734996 17 0.0714554571249892 0.905582874410202 1213 0.225342086628977 2 1 1 -6.81935705977728 LTS-003 chr8 30361990 30395068 33079 * RBPMS NA 0 NA 1.005 1 NA NA NA NA NA LTS-003 chr8 30395069 37641926 7246858 * c(SMIM18, NRG1-IT3, RBPMS, ERLIN2, PROSC, UNC5D, KCNU1, GSR, GTF2E2, PURG, NRG1, PPP2CB, TEX15, LOC728024, WRN, DUSP26, RNF122, UBXN8, ZNF703, TTI2, MAK16, FUT10) 0.420043506770296 18 0.112461758206172 1.02068787034074 2201 0.236106419596295 2 1 1 -7.02094085938033 LTS-003 chr8 37641927 37654453 12527 * ADGRA2 NA 0 NA 0.317 1 NA NA NA NA NA LTS-003 chr8 37654454 39311650 1657197 * c(GOT1L1, LETM2, ADRB3, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.44051131094545 25 0.098900235928266 0.940326087936584 2243 0.228986395679083 2 1 1 -6.7436169764588 LTS-003 chr8 39311651 39311654 4 * ADAM3A 0.478 1 NA 1.796 1 NA NA NA NA NA LTS-003 chr8 39311655 39335245 23591 * ADAM3A 0.440754751061721 7 0.0463321342770508 1.63855858734793 52 0.566108247167723 4 2 2 -6.74475539056641 LTS-003 chr8 39335246 39349332 14087 * ADAM3A NA 0 NA 1.006 1 NA NA NA NA NA LTS-003 chr8 39349333 41754040 2404708 * c(LOC100130964, GPAT4, NKX6-3, ADAM3A, IDO2, ADAM2, ANK1, IDO1, GOLGA7, C8orf4, MIR486-1, SFRP1, ZMAT4, GINS4, ADAM18) 0.461145325625457 31 0.0337734705327711 0.996583820786879 1321 0.240894281291175 2 1 1 -7.1235071971051 LTS-003 chr8 41754041 41754080 40 * ANK1 NA 0 NA 1.192 1 NA NA NA NA NA LTS-003 chr8 41754081 42294707 540627 * c(AP3M2, DKK4, ANK1, IKBKB, PLAT, POLB, SLC20A2, VDAC3, KAT6A) 0.402801022268701 3 0.0245017006212494 1.10234241648586 821 0.237752110980138 2 1 1 -7.69877118965181 LTS-003 chr8 42294708 42552633 257926 * c(CHRNB3, SMIM19, SLC20A2) 0.49 1 NA 1.02129551483116 79 0.266869788957757 2 2 0 -5.77267993050598 LTS-003 chr8 42552634 43212050 659417 * c(MIR4469, CHRNB3, HGSNAT, FNTA, POTEA, THAP1, RNF170, POMK, HOOK3, CHRNA6) NA 0 NA 0.961649208586608 733 0.263830322994892 2 NA NA -5.76442390435052 LTS-003 chr8 47752736 48975705 1222970 * c(LOC100287846, CEBPD, SPIDR, MCM4, LINC00293, PRKDC, UBE2V2) NA 0 NA 0.93625251021532 938 0.19899789324118 2 NA NA -5.77616177343062 LTS-003 chr8 48975706 48975726 21 * character(0) 0.495 1 NA 1.774 1 NA NA NA NA NA LTS-003 chr8 48975727 53092905 4117179 * c(PCMTD1, PXDNL, C8orf22, SNTG1, SNAI2, EFCAB1, ST18) 0.380962649136098 26 0.092593337524069 1.0468590035503 792 0.363492097460758 2 1 1 -7.06260691690075 LTS-003 chr8 53092906 53122559 29654 * ST18 NA 0 NA 0.714 1 NA NA NA NA NA LTS-003 chr8 53122560 65285955 12163396 * c(MIR124-2HG, LOC100130298, SBF1P1, LINC00968, LINC01606, MIR4470, YTHDF3-AS1, LYPLA1, XKR4, TMEM68, UBXN2B, CLVS1, CYP7A1, SDR16C5, YTHDF3, LINC00588, SNORD54, NPBWR1, LOC286177, NKAIN3, LINC01289, MRPL15, FAM150A, LYN, MOS, ASPH, OPRK1, ATP6V1H, PENK, PLAG1, IMPAD1, CHD7, RAB2A, RP1, RPS20, SDCBP, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, NSMAF, RGS20, GGH, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.427041630776227 47 0.11298569326475 0.947161357340088 3815 0.211301759199923 2 1 1 -6.76571270400431 LTS-003 chr8 65285956 65711004 425049 * c(MIR124-2HG, BHLHE22, LOC401463, MIR124-2, CYP7B1) 0.391297584825151 2 0.00282842712474619 1.32368695592728 166 0.43883594318496 18 11 7 -9.80299421270212 LTS-003 chr8 65711005 66439610 728606 * c(LINC01299, LINC00251, CYP7B1) NA 0 NA 1.29224511384765 12 0.201193635058067 3 NA NA -5.791381419534 LTS-003 chr8 66439611 66444801 5191 * LINC01299 0 1 NA 2.11057564244209 35 2.7740575966587 5 5 0 -5.76441031451568 LTS-003 chr8 66444802 66516866 72065 * c(LINC01299, ARMC1) NA 0 NA 1.79526516083719 48 0.623339039777422 4 NA NA -5.76446156785405 LTS-003 chr8 66516867 66517523 657 * ARMC1 NA 0 NA 1.438 1 NA NA NA NA NA LTS-003 chr8 66517524 67405490 887967 * c(LINC00967, RRS1-AS1, ADHFE1, CRH, RRS1, PDE7A, ARMC1, TRIM55, DNAJC5B, MTFR1) 0.335625680258608 19 0.147403769778894 1.20764049630207 573 0.377032590046877 3 2 1 -6.79260314673981 LTS-003 chr8 67405491 67593063 187573 * c(C8orf44-SGK3, C8orf46, MYBL1, C8orf44, VCPIP1) NA 0 NA 1.23862520239005 461 0.31635804023277 3 NA NA -5.77400913257486 LTS-003 chr8 67593064 67679644 86581 * c(C8orf44-SGK3, SGK3, PTTG3P, C8orf44) NA 0 NA 0.776 1 NA NA NA NA NA LTS-003 chr8 67679645 67786633 106989 * c(C8orf44-SGK3, MCMDC2, SGK3, PTTG3P) 0.5 1 NA 0.985785494646779 129 0.316551215439341 2 2 0 -5.76485474389071 LTS-003 chr8 67786634 71012938 3226305 * c(TCF24, LINC01592, ARFGEF1, COPS5, C8orf34, MCMDC2, SULF1, PPP1R42, C8orf34-AS1, CPA6, PRDM14, SNHG6, SNORD87, CSPP1, PREX2, SLCO5A1) 0.450223969197371 26 0.0376143385099148 1.01246996357831 1726 0.228335837836159 2 1 1 -6.94100436880319 LTS-003 chr8 71012939 71015867 2929 * character(0) NA 0 NA 0.877 1 NA NA NA NA NA LTS-003 chr8 71015868 75233593 4217726 * c(STAU2-AS1, C8orf89, MSC-AS1, NCOA2, RDH10, SBSPON, EYA1, TRAM1, LY96, STAU2, LACTB2-AS1, XKR9, LOC392232, LACTB2, TMEM70, UBE2W, JPH1, RPL7, TCEB1, TERF1, TRPA1, MSC, KCNB2) 0.450769244900275 35 0.0874446283382238 0.937841233869841 1870 0.263531189370834 2 1 1 -6.77423490389572 LTS-003 chr8 75233594 75262566 28973 * character(0) NA 0 NA 1.332 1 NA NA NA NA NA LTS-003 chr8 75262567 77777388 2514822 * c(ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, HNF4G, MIR2052HG, PI15, GDAP1, ZFHX4, CRISPLD1) 0.428022344433112 10 0.149941803525383 1.01686494887718 766 0.24146773485405 2 1 1 -6.81812667657069 LTS-003 chr8 77777389 77911987 134599 * c(PEX2, ZFHX4) 0.384428666596594 3 0.0308058436014988 1.33608197557144 131 0.809618198367969 8 5 3 -6.8536042935484 LTS-003 chr8 77911988 88886203 10974216 * c(REXO1L2P, MIR5708, LOC101241902, WWP1, STMN2, DCAF4L2, RALYL, SLC7A13, CNBD1, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf59, ZC2HC1A, RMDN1, PMP2, CNGB3, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, CA1, CA2, CA3, ZFAND1, LRRCC1, PSKH2, CPNE3, CHMP4C) 0.45208715814286 41 0.0392205925254678 0.9697449665201 2998 0.229328515713298 2 1 1 -6.86589221314975 LTS-003 chr8 88886204 89209548 323345 * c(DCAF4L2, MMP16) 0.29350550423464 4 0.196393100693482 1.50693800910384 248 0.418998149629223 4 3 1 -6.76536420530842 LTS-003 chr8 89209549 97307409 8097861 * c(C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, SLC26A7, FAM92A1, NDUFAF6, C8orf37, DECR1, TMEM64, RAD54B, KIAA1429, GEM, TRIQK, DPY19L4, C8orf87, RBM12B, GDF6, MMP16, FLJ46284, NBN, MTERF3, OTUD6B, PDP1, ESRP1, RBM12B-AS1, TMEM55A, INTS8, LINC01298, NECAB1, LINC00535, OSGIN2, UQCRB, CALB1, PLEKHF2, RUNX1T1, RIPK2, TMEM67, CCNE2, NA NA NA NA NA NA NA NA NA LTS-003 TP53INP1, PTDSS1) 0.43684125041277 33 0.115294312128096 0.964498947053998 3609 0.241743177239128 2 1 1 -6.73500875451268 LTS-003 NA NA NA NA LTS-003 chr8 97307410 97398842 91433 * PTDSS1 0.386745916770682 6 0.0244329013149619 1.39460415033382 142 0.55363018449205 8 5 3 -6.92632360021241 LTS-003 chr8 97398843 97398900 58 * character(0) NA 0 NA 1.098 1 NA NA NA NA NA LTS-003 chr8 97398901 99153159 1754259 * c(RIDA, CPQ, POP1, ERICH5, SNORA72, MATN2, LAPTM4B, RPL30, SDC2, TSPYL5, MTDH) 0.433254286446651 25 0.0863619707973365 0.954213139003243 753 0.224473143580011 2 1 1 -6.73392752022892 LTS-003 chr8 99153160 99158717 5558 * POP1 NA 0 NA 1.276 1 NA NA NA NA NA LTS-003 chr8 99158718 100147388 988671 * c(POP1, OSR2, VPS13B, KCNS2, STK3, NIPAL2) 0.37399320061756 3 0.0119303534454489 1.32702974712538 480 0.317164130125734 3 2 1 -8.21845111942657 LTS-003 chr8 100147389 100147814 426 * VPS13B NA 0 NA 0.852 1 NA NA NA NA NA LTS-003 chr8 100147815 102571025 2423211 * c(MIR875, MIR4471, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ZNF706, POLR2K, SPAG1, MIR599, YWHAZ, GRHL2, NACAP1) 0.444970040326211 20 0.0445605442657869 0.912541330658664 1223 0.229867661849088 2 1 1 -6.83738187058457 LTS-003 chr8 102571026 102582527 11502 * GRHL2 NA 0 NA 1.158 1 NA NA NA NA NA LTS-003 chr8 102582528 104664599 2082072 * c(MIR3151, BAALC-AS1, MIR5680, CTHRC1, BAALC-AS2, DCAF13, ODF1, RRM2B, UBR5, AZIN1, ATP6V1C1, KLF10, BAALC, GRHL2, SLC25A32, FZD6, NCALD, RIMS2) 0.345386270859645 30 0.0950842397228803 1.24873792981436 1452 3.12868932926315 3 2 1 -6.73745514666439 LTS-003 chr8 104664600 120743637 16079038 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, ABRA, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TAF2, TRHR, TRPS1, DCSTAMP, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.435891644052237 72 0.09562304955205 1.0243492274597 4098 0.303295657875927 2 1 1 -7.14314582072672 LTS-003 chr8 120743638 126449406 5705769 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.46440584786368 48 0.0273697754818902 0.949094151340973 3206 0.2232496542441 2 1 1 -7.39115238432033 LTS-003 chr8 126449407 126450234 828 * TRIB1 NA 0 NA 0.900666873178096 18 0.163549916427367 2 NA NA -5.76448601654599 LTS-003 chr8 126450235 127566701 1116467 * c(LINC00861, TRIB1, FAM84B) 0.372 1 NA 1.28625955060001 41 0.191976888217713 3 3 0 -5.81836424587922 LTS-003 chr8 127566702 130764177 3197476 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, PCAT1, FAM84B, MYC, POU5F1B, GSDMC, PVT1, CASC8, LINC00977) 0.386569781604746 5 0.0589194365214061 1.48708428740354 295 0.356579296052565 3 2 1 -7.0460705159733 LTS-003 chr8 130764178 134250430 3486253 * c(ASAP1-IT2, MIR5194, HHLA1, NDRG1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, ASAP1, PHF20L1, FAM49B, GSDMC, SLA, TG, OC90, WISP1, HPYR1) 0.362591440891185 58 0.0626952220276296 1.26797957771218 1907 0.305690176316223 3 2 1 -6.85287142901589 LTS-003 chr8 134250431 134297231 46801 * NDRG1 NA 0 NA 1.2802727768578 103 0.212539832214897 3 NA NA -5.76660217515193 LTS-003 chr8 134297232 134308665 11434 * NDRG1 NA 0 NA 0.891 1 NA NA NA NA NA LTS-003 chr8 134308666 134470361 161696 * c(NDRG1, ST3GAL1) 0.481 1 NA 0.968876652271963 83 0.185810192303636 2 2 0 -5.7646399687519 LTS-003 chr8 134470362 140946146 6475785 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, ST3GAL1, TRAPPC9) 0.453891155925884 23 0.109302640378336 1.0409999177329 1049 0.233076859338266 2 1 1 -7.1866062786248 LTS-003 chr8 140946147 143365932 2419786 * c(MIR4472-1, PTP4A3, TSNARE1, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC00051, LINC01300, TRAPPC9) 0.443559223498481 50 0.0735644351738595 0.936516512249788 1351 0.249111378552353 2 1 1 -6.75695705192061 LTS-003 chr8 143365933 143381880 15948 * TSNARE1 NA 0 NA 1.533 1 NA NA NA NA NA LTS-003 chr8 143381881 143556790 174910 * c(TSNARE1, ADGRB1) 0.405 1 NA 1.40825259950373 75 0.335227190946005 3 3 0 -5.76561227038371 LTS-003 chr8 143556791 143563087 6297 * ADGRB1 0.332 1 NA 1.71939731054162 47 3.03687050900045 4 4 0 -5.76441032717695 LTS-003 chr8 143563088 143998677 435590 * c(LOC100288181, LYPD2, CYP11B1, CYP11B2, ARC, GML, THEM6, LY6K, SLURP1, ADGRB1, LYNX1, PSCA, LY6D, JRK) 0.374669344523269 45 0.0505890853401755 1.37733336014574 796 0.381516983821286 3 2 1 -6.84474524983473 LTS-003 chr8 143998678 143999073 396 * CYP11B2 NA 0 NA 1.07 1 NA NA NA NA NA LTS-003 chr8 143999074 144695499 696426 * c(CDC42P3, LOC100133669, RHPN1, TOP1MT, CYP11B2, EEF1D, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6E, LY6H, MROH6, PYCRL, TSTA3, RHPN1-AS1, GSDMD, ZNF696, TIGD5, NAPRT) 0.365288229263609 76 0.0440897071968249 1.23914723981426 1210 0.304877682618708 3 2 1 -6.81962900581595 LTS-003 chr8 144695500 144696399 900 * TSTA3 NA 0 NA 1.1283823338027 16 0.271993742268702 2 NA NA -5.76460017221746 LTS-003 chr8 144696400 144774233 77834 * c(ZNF707, TSTA3, ZNF623) 0.308 1 NA 1.48233933706299 155 0.36409830971455 3 3 0 -5.7670847293207 LTS-003 chr8 144774234 145623895 849662 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR4664, CYC1, ADCK5, MAPK15, PUF60, BOP1, SCRIB, FBXL6, OPLAH, ZNF707, BREA2, FAM83H, GRINA, CPSF1, HSF1, NRBP2, WDR97, TMEM249, SPATC1, HGH1, PLEC, EXOSC4, SCX, MIR661, MROH1, SLC52A2, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, DGAT1, GPAA1) 0.29794851415603 29 0.0323823372156303 1.60969810838912 2544 0.337349540073026 4 3 1 -7.09772947109154 LTS-003 chr8 145623896 145737019 113124 * c(MIR1234, MFSD3, GPT, CPSF1, TONSL, CYHR1, VPS28, SLC39A4, PPP1R16A, FOXH1, KIFC2, RECQL4) 0.231519558524342 18 0.0486796920522373 1.91925845069577 841 0.406773527368491 5 4 1 -6.75793365956255 LTS-003 chr8 145737020 145737025 6 * RECQL4 NA 0 NA 1.396 1 NA NA NA NA NA LTS-003 chr8 145737026 146076827 339802 * c(COMMD5, ZNF517, C8orf82, LRRC24, RPL8, ZNF7, ARHGAP39, ZNF34, ZNF251, RECQL4, LRRC14) 0.288179164711869 12 0.0315165901478167 1.56275671788539 809 0.286693845242021 4 3 1 -6.89883245619745 LTS-003 chr8 146076828 146102296 25469 * COMMD5 NA 0 NA 1.127 1 NA NA NA NA NA LTS-003 chr8 146102297 146157932 55636 * c(COMMD5, ZNF250, ZNF16) 0.463794141413097 3 0.0183575597506858 0.982225922438531 179 0.205863580306392 2 1 1 -7.98001435097962 LTS-003 chr8 146157933 146280905 122973 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 0.909678837722069 259 0.167911559518871 2 NA NA -5.77203196233082 LTS-003 chr9 14732 213291 198560 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.486 1 NA 0.704726546096344 13 0.504210299023161 1 1 0 -5.78843125894448 LTS-003 chr9 213292 6893177 6679886 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, PUM3) 0.448336244976968 105 0.0602038250400301 0.947197261057461 3713 0.248408132563085 2 1 1 -6.77728856883124 LTS-003 chr9 6893178 15191281 8298104 * c(LINC00583, TTC39B, FREM1, KDM4C, LURAP1L, ZDHHC21, LOC389705, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, TMEM261, CER1) 0.458045697914705 39 0.0269977756868559 1.02692330930483 1585 0.257461481433283 2 1 1 -7.48515458462097 LTS-003 chr9 15191282 33625185 18433904 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, B4GALT1, SPINK4, TUSC1, ANXA2P2, DNAJA1, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, AQP3, NA NA NA NA NA NA NA NA NA LTS-003 AQP7, HACD4, LINC01242, TMEM215, MIR31, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, SMU1, MIR31HG, DENND4C, KLHL9, IFNK, BAG1, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, NOL6, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, PLAA) 0.449584613843512 115 0.0479402389867986 0.963258023353572 6214 0.228894510087775 2 1 1 -6.79536228551622 LTS-003 NA NA NA NA LTS-003 chr9 33625186 33629205 4020 * ANXA2P2 0 1 NA 1.26247032480365 5 1.36183872026022 3 3 0 -5.76441713913396 LTS-003 chr9 33629206 33797999 168794 * c(PTENP1, PRSS3) 0.316086669961116 9 0.0790917189091247 1.03790724949554 97 0.298716355278135 3 2 1 -6.93990039897916 LTS-003 chr9 33798000 33917498 119499 * c(UBE2R2, PRSS3) 0.459 1 NA 1.07140820270311 46 0.660899567380893 2 2 0 -5.76638257232352 LTS-003 chr9 33917499 34981924 1064426 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, PHF24, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, FAM205BP, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, KIAA1161, CCL19, CCL21, C9orf24) 0.44134990083267 49 0.0474763636143378 0.977281261895129 1806 0.330102337396934 2 1 1 -6.74794560895043 LTS-003 chr9 34981925 34993411 11487 * c(PHF24, DNAJB5) NA 0 NA 1.02918108758021 93 0.312690137387855 2 NA NA -5.76474984124565 LTS-003 chr9 34993412 34996275 2864 * DNAJB5 NA 0 NA 1.316 1 NA NA NA NA NA LTS-003 chr9 34996276 35042542 46267 * c(C9orf131, DNAJB5) 0.334 1 NA 1.30904603280599 57 0.239313233931676 3 3 0 -5.76507969641815 LTS-003 chr9 35042543 38068961 3026419 * c(GNE, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, FRMPD1, SPAG8, FBXO10, SIT1, STOML2, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, NA NA NA NA NA NA NA NA NA LTS-003 CD72, RGP1, MELK, RUSC2, ZBTB5) 0.350034494007143 68 0.0743147330174789 1.3109078081508 4232 0.349361940661443 3 2 1 -6.75273561027497 LTS-003 NA NA NA NA LTS-003 chr9 38068962 43861081 5792120 * c(FAM95C, FAM201A, ALDH1B1, ANKRD18A, ZNF658, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, SHB, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.460232428957252 6 0.0277037903543902 0.930449374451457 421 0.216442999907657 2 1 1 -7.28875147436827 LTS-003 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.949873217990374 8 0.309664680397546 2 NA NA -5.76463824281976 LTS-003 chr9 65602571 66457127 854557 * LOC286297 0.365 1 NA 1.03472141223901 3 0.0660101002372617 2 2 0 -6.35954786637034 LTS-003 chr9 66457128 69002304 2545177 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.310636557339019 21 0.0876275668736185 1.0477720163184 59 0.314918833066906 3 2 1 -7.76040190046936 LTS-003 chr9 69002305 69002317 13 * character(0) 0.4 1 NA 1.242 1 NA NA NA NA NA LTS-003 chr9 69002318 96717424 27715107 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, LOC100133920, VPS13A-AS1, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, MIR4670, BANCR, SEMA4D, SPTLC1, GADD45G, SPIN1, FAM122A, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, ANKRD19P, TRPM6, CTSL, CTSLP8, NXNL2, RASEF, FAM120AOS, LINC00475, PRUNE2, DAPK1, TMEM252, ECM2, S1PR3, SUSD3, ALDH1A1, SMC5, FAM120A, NA NA NA NA NA NA NA NA NA LTS-003 VPS13A, AGTPBP1, BICD2, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, IARS, LINC01501, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIR204, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, PGM5, PHF2, SHC3, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, RFK, KIF27, PRKACG, BARX1, PGM5-AS1, PGM5P2, NAA35, RORB, SLC28A3, CBWD6, SPATA31C2, IPPK, WNK2, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, FGD3, FAM189A2, TJP2, GDA, GNA14 NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ) 0.439426955216035 237 0.0554846122280117 1.07093422394328 12025 0.258860826401409 2 1 1 -8.79689749971574 LTS-003 NA NA NA NA LTS-003 chr9 96717425 96826968 109544 * c(PTPDC1, BARX1) NA 0 NA 1.384 1 NA NA NA NA NA LTS-003 chr9 96826969 97380157 553189 * c(LOC100132077, PTPDC1, MIRLET7DHG, ZNF169, FBP1, MIRLET7A1, MIRLET7D, MIRLET7F1, NUTM2F, MFSD14B, FBP2) 0.410486735542858 7 0.0477543316409746 1.38888608228573 448 1.3404422296243 5 3 2 -6.78649184642177 LTS-003 chr9 97380158 97382634 2477 * FBP1 NA 0 NA 0.98 1 NA NA NA NA NA LTS-003 chr9 97382635 103349484 5966850 * c(LINC00476, LOC100132781, LINC00092, MIR2278, MIR3074, CCDC180, LOC100499484, LOC100507346, MSANTD3-TMEFF1, NAMA, ANP32B, SEC61B, SLC35D2, COL15A1, CTSV, TSTD2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ANKS6, FANCC, FBP1, ZNF510, HABP4, FOXE1, ERP44, TDRD7, INVS, LOC286359, HSD17B3, GAS2L1P2, MURC, ERCC6L2, MIR23B, LOC441454, LOC441455, NUTM2G, STX17-AS1, NCBP1, TRMO, NANS, TEX10, STX17, TBC1D2, HEMGN, NA NA NA NA NA NA NA NA NA LTS-003 PTCH1, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, GALNT12, NR4A3, MFSD14C, C9orf3, ALG2, CDC14B, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.419212741179945 84 0.0732192643452285 1.05292186091928 4786 0.793889472227367 2 1 1 -6.80643794821213 LTS-003 NA NA NA NA LTS-003 chr9 103349485 114090595 10741111 * c(MIR548Q, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, IKBKAP, CTNNAL1, NA NA NA NA NA NA NA NA NA LTS-003 KLF4) 0.39661615688643 117 0.107462179174089 1.12427036024105 5110 1.54642379691138 2 1 1 -6.87240155751644 LTS-003 NA NA NA NA LTS-003 chr9 114090596 115249476 1158881 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.431872699735272 28 0.0526853869683046 1.00732281293165 1257 0.240872703789273 2 1 1 -6.76177400661232 LTS-003 chr9 115249477 115336294 86818 * KIAA1958 NA 0 NA 1.287 1 NA NA NA NA NA LTS-003 chr9 115336295 117074810 1738516 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.426045212871008 86 0.0804043449493279 1.09408193726378 2564 0.396698673067422 2 1 1 -6.85033584892372 LTS-003 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.409 1 NA NA NA NA NA LTS-003 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.323251267582935 41 0.107513152910611 1 NA NA -5.83632270096643 LTS-003 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.21 1 NA NA NA NA NA LTS-003 chr9 117092173 123171654 6079482 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.41646773436261 37 0.106026860724984 1.14959477789941 1714 0.332641543925725 2 1 1 -7.66432646429776 LTS-003 chr9 123171655 123173535 1881 * CDK5RAP2 NA 0 NA 0.933 1 NA NA NA NA NA LTS-003 chr9 123173536 136342415 13168880 * c(LOC100129034, LOC100272217, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, CELP, POMT1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, AK8, OR1Q1, TTLL11, TTC16, STKLD1, OLFML2A, DNM1, TOR1A, MEGF9, NA NA NA NA NA NA NA NA NA LTS-003 ENDOG, ENG, AK1, NAIF1, STOM, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 NTMT1, GSN, PKN3, SLC2A8, OBP2B, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TRAF1, TSC1, C5, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C5, GTF3C4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 LHX2, MED27, PTGES, RALGPS1) 0.420036565375641 307 0.0795185987904522 1.06580717568621 17808 0.323865882825591 2 1 1 -7.47802825984176 LTS-003 NA NA NA NA LTS-003 chr9 136342416 136390196 47781 * c(SLC2A6, TMEM8C) NA 0 NA 1.09239051989135 39 0.22059380970438 2 NA NA -5.77420246261277 LTS-003 chr9 136390197 136399408 9212 * ADAMTSL2 NA 0 NA 0.596 1 NA NA NA NA NA LTS-003 chr9 136399409 136405042 5634 * ADAMTSL2 0.22 1 NA 0.691420419366033 35 0.129712306096766 1 1 0 -5.77307147495288 LTS-003 chr9 136405043 138701573 2296531 * c(LINC01502, RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, WDR5, COL5A1, C9orf116, DBH-AS1, CAMSAP1, C9orf62, DBH, SARDH, FCN1, FCN2, LINC00094, OBP2A, GLT6D1, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, KCNT1, RXRA, FAM163B, VAV2, BRD3, ADAMTSL2, PPP1R26) 0.177900248077454 68 0.0454702673744169 0.763481231437078 2102 0.369023376006385 1 1 0 -7.85369585115134 LTS-003 chr9 138701574 138701672 99 * CAMSAP1 NA 0 NA 0.963 1 NA NA NA NA NA LTS-003 chr9 138701673 141070283 2368611 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, UBAC1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, NACC2, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, NA NA NA NA NA NA NA NA NA LTS-003 MIR126, LCN10, STPG3, NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.186885192215853 147 0.0560386821085319 0.71972999295071 6215 0.724244588402524 1 1 0 -7.20797378484546 LTS-003 NA NA NA NA LTS-003 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.511370348269794 5 0.224945993518444 1 NA NA -5.76456419741891 LTS-003 chr10 94832 94870 39 * TUBB8 0.385 1 NA 0.567 1 NA NA NA NA NA LTS-003 chr10 94871 4867298 4772428 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, TUBB8, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, IDI2) 0.422117733707131 64 0.089762202380459 1.07143160197677 1691 0.265655760821579 2 1 1 -7.19617964402869 LTS-003 chr10 4867299 4868374 1076 * AKR1E2 NA 0 NA 2.104 1 NA NA NA NA NA LTS-003 chr10 4868375 6277522 1409148 * c(MIR3155A, MIR3155B, NET1, AKR1C4, UCN3, AKR1C1, AKR1C2, GDI2, AKR1C8P, IL2RA, IL15RA, AKR1C6P, CALML5, PFKFB3, ANKRD16, FAM208B, ASB13, TUBAL3, CALML3, AKR1E2, FBXO18, RBM17, AKR1C3) 0.430866062341657 41 0.035230651150494 1.3911184061828 1614 0.356779345167479 4 2 2 -7.08085626313644 LTS-003 chr10 6277523 6319747 42225 * LOC399715 NA 0 NA 0.855 1 NA NA NA NA NA LTS-003 chr10 6319748 9450267 3130520 * c(LINC00707, KIN, GATA3, ITIH2, LOC399715, GATA3-AS1, PRKCQ-AS1, ATP5C1, PRKCQ, SFMBT2, ITIH5, TAF3) 0.428181499146089 24 0.0971756869306041 1.07058534716612 1061 0.290406611831781 2 1 1 -6.98842589227067 LTS-003 chr10 11047272 12111147 1063876 * c(CELF2, PROSER2-AS1, PROSER2, UPF2, CELF2-AS2, DHTKD1, ECHDC3, USP6NL) 0.300894514471841 4 0.0791764906185331 1.55245679825881 675 0.356112763407277 4 3 1 -6.881551489924 LTS-003 chr10 12111148 12123424 12277 * DHTKD1 NA 0 NA 1.11 1 NA NA NA NA NA LTS-003 chr10 12123425 12871167 747743 * c(MIR4480, NUDT5, SEC61A2, DHTKD1, CAMK1D, CDC123) 0.412498117132158 18 0.0474921734178139 1.08116291674885 497 0.291862535463181 2 1 1 -6.93053335402318 LTS-003 chr10 12871168 12872233 1066 * CAMK1D 0 1 NA 1.23268185338164 19 1.60150405914627 3 3 0 -5.76441249214503 LTS-003 chr10 12872234 12873827 1594 * character(0) 0.388343846666159 3 0.0565803263805833 1.30499559587745 43 0.541473869378304 13 8 5 -6.74102105065824 LTS-003 chr10 12873828 15883594 3009767 * c(PPIAP30, MIR1265, OPTN, RPP38, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, NA, ACBD7, CDNF, HSPA14, PHYH, OLAH, MCM10, FRMD4A, DCLRE1C, MEIG1, SUV39H2, FAM188A, FAM107B, CCDC3, ITGA8, PRPF18, NMT2) 0.295281771787146 57 0.0567716703681597 1.54273644540838 2134 0.400367496765803 4 3 1 -7.00702270298823 LTS-003 chr10 15883595 15885119 1525 * FAM188A NA 0 NA 0.847 1 NA NA NA NA NA LTS-003 chr10 15885120 16554727 669608 * c(FAM188A, PTER) 0.299211135581274 3 0.168737468670516 1.15736864630836 79 0.316718148499726 3 2 1 -6.89387024978293 LTS-003 chr10 16554728 16554797 70 * PTER 0.453 1 NA 0.874 1 NA NA NA NA NA LTS-003 chr10 16554798 17953152 1398355 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, NA, RSU1, TMEM236, VIM, STAM, CUBN, HACD1, PTER) 0.446131277537499 21 0.0467684773772942 0.990457649466255 1039 0.259579676824409 2 1 1 -6.78298252777271 LTS-003 chr10 17953153 18060259 107107 * c(MRC1, NA, TMEM236) NA 0 NA 0.009 1 NA NA NA NA NA LTS-003 chr10 18060260 18196475 136216 * c(MRC1, NA, TMEM236) NA 0 NA 0.465313781790256 83 0.331171503154952 1 NA NA -5.79069949819331 LTS-003 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.81 1 NA NA NA NA NA LTS-003 chr10 18198201 29169141 10970941 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, GPR158, ARHGAP21, NA NA NA NA NA NA NA NA NA LTS-003 DNAJC1, LINC00264, BMI1, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.448258672970945 71 0.069307067588423 0.978318135880584 5055 0.26612666410148 2 1 1 -6.78963106022 LTS-003 NA NA NA NA LTS-003 chr10 29169142 33619731 4450590 * c(MIR938, LYZL2, MAP3K8, ZNF438, ZEB1-AS1, NA, ITGB1, KIF5B, PTCHD3P1, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, LYZL1, NRP1, ARHGAP12) 0.433392315077836 56 0.0809578293302762 0.913852660635 1898 0.546823559288215 2 1 1 -6.75484620243689 LTS-003 chr10 33619732 36810786 3191055 * c(LINC00838, CREM, GJD4, CCNY, PARD3, FZD8, CUL2, NRP1) 0.404398269218287 12 0.0290824324771481 1.24057183525518 676 0.27309745459512 3 2 1 -8.40877939921346 LTS-003 chr10 36810787 36811018 232 * character(0) 0.358 1 NA 1.52733035654222 6 0.720722970356849 3 3 0 -5.76441379057623 LTS-003 chr10 36811019 38740382 1929364 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, SEPT7P9, LINC00999, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.283769395691355 22 0.113465453292661 1.26583137108257 665 0.278532181229771 3 2 1 -7.02024211232288 LTS-003 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 1.038 1 NA NA NA NA NA LTS-003 chr10 42379879 42947161 567283 * LOC441666 0.422086351117929 8 0.0989602192802744 1.10521504666976 48 0.6829224227253 2 1 1 -6.75661541931204 LTS-003 chr10 42947162 42949600 2439 * character(0) NA 0 NA 1.303 1 NA NA NA NA NA LTS-003 chr10 42949601 45644217 2694617 * c(ZNF37BP, C10orf142, RSU1P2, LINC00840, MIR5100, HNRNPA3P1, C10orf10, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, ZNF239, RASSF4, LINC00839, BMS1) 0.357449283373482 42 0.066524767684278 1.28363919844542 1373 0.280531873811392 3 2 1 -6.80161198791699 LTS-003 chr10 45644218 45659457 15240 * c(RSU1P2, ANKRD30BP3) NA 0 NA 0.664 1 NA NA NA NA NA LTS-003 chr10 45659458 47416867 1757410 * c(MIR3156-1, AGAP4, MARCH8, ALOX5, FAM21C, PTPN20, ANKRD30BP3, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, OR13A1, SYT15, ZFAND4, GPRIN2) 0.356881909037344 36 0.10767813222159 0.957487419675564 603 0.264832001730673 2 1 1 -7.02852324884143 LTS-003 chr10 47416868 47682811 265944 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) 0.474 1 NA 1.00440812592295 61 0.395346184330241 2 2 0 -5.76648230373766 LTS-003 chr10 47682812 47756145 73334 * c(NA, PTPN20, GLUD1P7, NA, NA) 0.400520611502395 3 0.0852193248819382 1.02938808764643 26 0.209699686364902 2 1 1 -6.83086639789404 LTS-003 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.008 1 NA NA NA NA NA LTS-003 chr10 47903105 48025647 122543 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.315191199147965 39 0.289799556117752 1 NA NA -6.04328502284931 LTS-003 chr10 48025648 48029194 3547 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.637 1 NA NA NA NA NA LTS-003 chr10 48029195 48438594 409400 * c(ZNF488, CTSLP2, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.465340450621803 7 0.0200499376557634 1.09796886906641 278 0.342414723063581 2 1 1 -7.94334565005364 LTS-003 chr10 48438595 48438599 5 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.691 1 NA NA NA NA NA LTS-003 chr10 48438600 48738068 299469 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) 0.413643563292082 3 0.0762714450717523 0.405911405260112 42 0.312004187857179 2 1 1 -7.90405696798928 LTS-003 chr10 48738069 48739368 1300 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.979 1 NA NA NA NA NA LTS-003 chr10 48739369 51592690 2853322 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, C10orf53, NA, GLUD1P7, MSMB, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.45966520627391 66 0.0368977292559098 0.990449429939692 2133 0.232561313831832 2 1 1 -7.03372168610439 LTS-003 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.017 1 NA NA NA NA NA LTS-003 chr10 51603249 51633060 29812 * c(TIMM23, NA, PARG) NA 0 NA 0.476216656525505 39 0.17594474887268 1 NA NA -5.78011415605102 LTS-003 chr10 51633061 51827843 194783 * c(NA, FAM21A, AGAP6, NA, PARG) NA 0 NA 1.048 1 NA NA NA NA NA LTS-003 chr10 51827844 61112291 9284448 * c(MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, A1CF, FAM21A, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, PHYHIPL) 0.441635031439696 36 0.0837130397003538 1.00838185477851 1891 0.294079895061373 2 1 1 -6.88844909634193 LTS-003 chr10 61112292 61115563 3272 * FAM13C NA 0 NA 1.676 1 NA NA NA NA NA LTS-003 chr10 61115564 62038666 923103 * c(MRLN, SLC16A9, FAM13C, LINC01553, ANK3, CCDC6) 0.426904891565104 11 0.0530065176095441 1.29761877405501 752 0.314484001564004 2 1 1 -7.21411500914588 LTS-003 chr10 62038667 62038718 52 * ANK3 NA 0 NA 1.069 1 NA NA NA NA NA LTS-003 chr10 62038719 71637854 9599136 * c(MIR1296, MIR548AV, COL13A1, DNA2, EGR2, C10orf107, TMEM26, STOX1, C10orf35, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, ANK3, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, NEUROG3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A, CDK1, RHOBTB1) 0.419783731397268 76 0.12841392707439 0.93091561185642 4219 0.269770368624468 2 1 1 -6.81546541877159 LTS-003 chr10 71637855 71640173 2319 * COL13A1 NA 0 NA 1.413 1 NA NA NA NA NA LTS-003 chr10 71640174 72289692 649519 * c(COL13A1, EIF4EBP2, TYSND1, PALD1, NODAL, PPA1, LRRC20, H2AFY2, SAR1A, NPFFR1, AIFM2) 0.318022475192632 12 0.0490222583953638 1.436087542648 870 0.327733728411076 3 2 1 -7.02982479338299 LTS-003 chr10 72289693 72289701 9 * PALD1 0.485 1 NA 0.821 1 NA NA NA NA NA LTS-003 chr10 72289702 73471911 1182210 * c(ADAMTS14, UNC5B, TBATA, PALD1, C10orf105, PCBD1, SLC29A3, PRF1, CDH23, UNC5B-AS1, SGPL1) 0.443605522376427 17 0.0379361886826379 0.965394140544925 1014 0.221242927346589 2 1 1 -6.76910522341873 LTS-003 chr10 73471912 73471915 4 * c(C10orf105, CDH23) NA 0 NA 0.777 1 NA NA NA NA NA LTS-003 chr10 73471916 77312183 3840268 * c(ZNF503-AS2, MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf105, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, C10orf54, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, ZNF503, NDST2, MCU, CHST3, NA NA NA NA NA NA NA NA NA LTS-003 SEC24C, SPOCK2) 0.405640745390552 62 0.0906750187008166 0.841072248725999 4263 0.191468508165499 2 1 1 -7.73112181688326 LTS-003 NA NA NA NA LTS-003 chr10 77312184 77312191 8 * character(0) NA 0 NA 1.008 1 NA NA NA NA NA LTS-003 chr10 77312192 80288511 2976320 * c(DLG5-AS1, LINC00856, POLR3A, KCNMA1, LINC00595, RPS24, C10orf11, DLG5) 0.428275564802761 18 0.111882583176742 0.911055369438118 844 0.218039710034255 2 1 1 -6.83653383421397 LTS-003 chr10 80288512 85903882 5615371 * c(LINC00856, BMS1P21, PPIF, NRG3, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, GHITM, ZMIZ1-AS1, ANXA11, SH2D4B, MAT1A, LINC00857, ZMIZ1, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P) 0.409243641011348 48 0.0660887003356605 1.10421562135231 1679 0.26564393881519 2 1 1 -7.63071258767001 LTS-003 chr10 85903883 85904635 753 * GHITM NA 0 NA 0.84 1 NA NA NA NA NA LTS-003 chr10 85904636 103455036 17550401 * c(TLX1NB, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, MIR1287, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, GRID1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR4685, MIR5692C2, LINC00502, RPP30, SORBS1, ERLIN1, LBX1, ADIRF, LDB3, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, ABCC2, COX15, CPN1, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, NA NA NA NA NA NA NA NA NA LTS-003 CYP2C9, CYP2C18, CYP26A1, NKX2-3, SLC35G1, LINC00858, DNTT, CPEB3, WAPL, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, GHITM, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, FLJ37201, GRID1, BLNK, HELLS, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, C10orf99, SLC16A12, CC2D2B, LIPA, LBX1-AS1, GOLGA7B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MIR107, C10orf62, LINC00863, IFIT1B, MIR346, NDUFB8, PAX2, EXOSC1, CUTC, PLCE1, PDE6C, PGAM1, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, C10orf2, TM9SF3, ENTPD7, PTEN, STAMBPL1, SEMA4G, ALDH18A1, ACTA2, RBP4, RGR, AVPI1, HPSE2, SCD, MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, MIR608, TLL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, WNT8B, MMRN2, PDZD7, UBTD1, TNKS2, KAZALD1, SFXN3, SLC25A28, MARVELD1, LOXL4, ZDHHC16, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, ATAD1, ARHGAP19, LIPF, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, PDLIM1, LGI1, CDHR1, OPALIN, OPN4, ENTPD1, MINPP1, KIF20B, ZNF518A) 0.423001031843924 311 0.0875897462904334 0.864619590655968 15174 0.225032818081915 2 1 1 -8.44127628598329 LTS-003 NA NA NA NA LTS-003 chr10 103455037 103530002 74966 * FGF8 NA 0 NA 1.29 1 NA NA NA NA NA LTS-003 chr10 103530003 103586900 56898 * c(KCNIP2-AS1, NPM3, MGEA5, FGF8, KCNIP2) 0.429600069783577 2 0.0261629509039023 1.08990981004692 226 0.217753516262404 2 1 1 -6.76413296140259 LTS-003 chr10 103586901 103870951 284051 * c(KCNIP2-AS1, KCNIP2, C10orf76, HPS6, LDB1) 0.420814231593351 6 0.0235520699727221 0.841730618690043 336 0.160244699165117 2 1 1 -7.03727943064772 LTS-003 chr10 103870952 103879831 8880 * LDB1 NA 0 NA 0.891692781469759 10 0.0920589183319272 2 NA NA -5.76784781275154 LTS-003 chr10 103879832 103899047 19216 * c(PPRC1, LDB1) 0.231 1 NA 0.602845234688014 29 0.10737367420057 1 1 0 -5.76940592128355 LTS-003 chr10 103899048 111440719 7541672 * c(MIR936, MIR1307, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, MIR4482, ACTR1A, SORCS1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, COL17A1, CYP17A1, CFAP58, NT5C2, PDCD11, SORCS3, PPRC1, CALHM1, ARL3, NFKB2, CALHM2, SUFU, PITX3, CNNM2, WBP1L, PSD, AS3MT, MIR146B, TAF5, MIR609, RPEL1, CUEDC2, FBXL15, MFSD13A, C10orf95, OBFC1, CFAP43, TRIM8, ELOVL3, PCGF6, USMG5, ITPRIP, GBF1, INA, NEURL1, NOLC1, GSTO1, SH3PXD2A, NA NA NA NA NA NA NA NA NA LTS-003 SLK) 0.218368676100178 102 0.0624346530834391 0.628802961323674 4435 0.192191953460529 1 1 0 -8.71515110334752 LTS-003 NA NA NA NA LTS-003 chr10 111440720 111440770 51 * character(0) NA 0 NA 0.953 1 NA NA NA NA NA LTS-003 chr10 111440771 112599257 1158487 * c(ADD3-AS1, SMNDC1, ADD3, DUSP5, RBM20, MXI1, XPNPEP1, SMC3) 0.158957892869984 15 0.0425773246156751 0.898153163925784 784 0.214084357366356 2 2 0 -8.21498967490644 LTS-003 chr10 112599258 112635707 36450 * c(PDCD4, PDCD4-AS1) NA 0 NA 0.527 1 NA NA NA NA NA LTS-003 chr10 112635708 118764683 6128976 * c(MIR2110, MIR4295, MIR4680, MIR4483, PNLIPRP3, TRUB1, VTI1A, C10orf82, ADRA2A, ADRB1, HSPA12A, ATRNL1, GFRA1, PDCD4, HABP2, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, ZDHHC6, RPL13AP6, TCF7L2, TECTB, PLEKHS1, SHOC2, CASP7, AFAP1L2, BBIP1, DCLRE1A) 0.228677336349477 56 0.0520190274878262 0.63962752447544 4095 0.162250707404781 1 1 0 -9.71609932360063 LTS-003 chr10 118764684 118764750 67 * SHTN1 NA 0 NA 1.053 1 NA NA NA NA NA LTS-003 chr10 118764751 119309387 544637 * c(MIR3663, VAX1, PDZD8, EMX2OS, EMX2, KCNK18, SHTN1, SLC18A2) 0.147919269823062 7 0.0839790223238887 1.04198908014738 485 0.300728410335345 2 2 0 -7.07588636228047 LTS-003 chr10 119309388 121652470 2343083 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.211225566853223 20 0.0639865117365412 0.597539617601219 1487 0.145096684098158 1 1 0 -7.5552581806108 LTS-003 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 0.788 1 NA NA NA NA NA LTS-003 chr10 121657875 129924069 8266195 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CLRN3, CPXM2, CTBP2, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, MKI67, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, NA NA NA NA NA NA NA NA NA LTS-003 HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.249106144145182 140 0.0764570891748936 0.645291840382822 5198 0.191213080524499 1 1 0 -9.55258085067441 LTS-003 NA NA NA NA LTS-003 chr10 131265430 131636254 370825 * c(EBF3, MGMT) 0.13231539236206 2 0.0106066017177982 1.07300275217309 105 0.249674095968327 1 1 0 -8.73716626944526 LTS-003 chr10 131636255 131637273 1019 * EBF3 NA 0 NA 0.675 1 NA NA NA NA NA LTS-003 chr10 131637274 134693111 3055838 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.238114544565434 63 0.066179262828087 0.643568043654106 1258 0.187600033450594 1 1 0 -8.5639411266475 LTS-003 chr10 134693112 134693118 7 * CFAP46 0.177 1 NA 0.207 1 NA NA NA NA NA LTS-003 chr10 134693119 134756359 63241 * CFAP46 0.247080629666355 10 0.042523196284172 0.318517775866136 175 0.0748168197592187 1 1 0 -10.6616381271273 LTS-003 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 0.916 1 NA NA NA NA NA LTS-003 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.289285376350073 42 0.0871340597413841 0.628563323157338 1401 0.185571300620406 1 1 0 -8.16670657935274 LTS-003 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.842 1 NA NA NA NA NA LTS-003 chr11 193025 193096 72 * SCGB1C1 0.088 1 NA 0.464 1 NA NA NA NA NA LTS-003 chr11 193097 792269 599173 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.24779629303142 56 0.0741213794805783 0.596689406697239 2172 0.159410249300555 1 1 0 -7.75515895916123 LTS-003 chr11 792270 1011597 219328 * c(AP2A2, CRACR2B, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, CHID1, TSPAN4, SLC25A22, CD151) 0.224866490835413 33 0.0661848736494979 0.625584486603231 713 0.173879195581491 1 1 0 -7.54415307181292 LTS-003 chr11 1011598 1016869 5272 * c(AP2A2, MUC6) 0.332 1 NA 0.60404938941051 59 0.0932377540717098 1 1 0 -5.76633262067955 LTS-003 chr11 1016870 1213556 196687 * c(MUC2, MUC6, MUC5B) 0.324633388444078 69 0.10109338317992 0.685849216719033 570 0.205006959001359 2 1 1 -7.66953808989095 LTS-003 chr11 1213557 1215580 2024 * MUC5B 0.278 1 NA 0.66411032642184 25 0.117075018684602 1 1 0 -5.76689361279028 LTS-003 chr11 1215581 3143293 1927713 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MUC5B, MOB2, CARS, SYT8, BRSK2, CD81) 0.238675953057667 90 0.0638790015689678 0.635388791470282 2693 0.171581341491673 1 1 0 -8.34429503915961 LTS-003 chr11 3143294 3187772 44479 * OSBPL5 0.143 1 NA 0.61130300444546 23 0.120419901051155 1 1 0 -5.77756626831772 LTS-003 chr11 3187773 4470580 1282808 * c(LOC100506082, MIR4687, OR7E12P, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, PGAP2, MRGPRG-AS1, MRGPRG, RHOG, ART1, NUP98, CHRNA10, RRM1, TSSC2, TRIM21, STIM1, TRPC2, ZNF195) 0.205395168418821 24 0.061815058434619 0.633047408438772 1012 0.194456240204757 1 1 0 -7.52964386555528 LTS-003 chr11 4470581 4968342 497762 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, OR51G1, OR51G2, OR51E2) 0.205816477367685 51 0.0479445594860744 0.777893989130048 719 0.354217512306953 1 1 0 -7.80419983470948 LTS-003 chr11 4968343 5009548 41206 * c(OR51A2, MMP26) NA 0 NA 0.30093048800609 40 0.234989851117458 0 NA NA -5.92744718024369 LTS-003 chr11 5009549 5528918 519370 * c(OR52E2, OR52J3, OR51L1, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, MMP26, OR51B4, OR51B2) 0.23391179668999 20 0.0319570435362683 0.71902361819767 636 0.327362792521538 5 4 1 -9.1271737502354 LTS-003 chr11 5528919 5529139 221 * c(HBG2, UBQLN3) 0.252 1 NA 0.6380628957904 7 0.0789782971997461 1 1 0 -5.76475406086525 LTS-003 chr11 5529140 5777005 247866 * c(TRIM22, TRIM6, UBQLNL, HBG2, OR52B6, OR56B1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM5) 0.227718637590664 19 0.0519955576150108 0.674481589296988 542 0.173941758825282 1 1 0 -8.11369541177081 LTS-003 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.216 1 NA NA NA NA NA LTS-003 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.232223225823938 3 0.0754254598925323 1.08252762222771 50 0.337453225178947 5 4 1 -6.77029038904349 LTS-003 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.607 1 NA NA NA NA NA LTS-003 chr11 5817708 8798248 2980541 * c(TRIM22, TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, CYB5R2, RPL27A, SNORA3A, MRPL17, STK33, SMPD1, NA NA NA NA NA NA NA NA NA LTS-003 ST5, SNORA3B, TAF10, TUB, ZNF214, ZNF215, RIC3, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.224539416143107 139 0.0465056313388004 0.648039592488202 4708 0.161967896488334 1 1 0 -9.25026760629062 LTS-003 NA NA NA NA LTS-003 chr11 8798249 8932697 134449 * ST5 NA 0 NA 0.549 1 NA NA NA NA NA LTS-003 chr11 8932698 10328691 1395994 * c(MIR5691, IPO7, ADM, SWAP70, DENND5A, KRT8P41, SBF2-AS1, TMEM41B, LOC440028, TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, LOC644656, SNORA23, WEE1, ZNF143, SBF2) 0.23690449809958 29 0.0778602227438009 0.597566990668198 1564 0.486341683498355 1 1 0 -7.47916231456378 LTS-003 chr11 10328692 10328697 6 * ADM NA 0 NA 0.759 1 NA NA NA NA NA LTS-003 chr11 10328698 11398907 1070210 * c(MRVI1-AS1, MTRNR2L8, MRVI1, LYVE1, ADM, EIF4G2, AMPD3, CSNK2A3, GALNT18, RNF141, ZBED5, SNORD97, ZBED5-AS1, CTR9) 0.165101040648247 21 0.0781305988469977 0.769633165442302 895 0.232914907691497 1 1 0 -7.76210617718615 LTS-003 chr11 11398908 11643550 244643 * GALNT18 0.453 1 NA 0.735048757374017 27 0.204132631037106 2 2 0 -6.00584283983507 LTS-003 chr11 11643551 11863828 220278 * c(MIR4299, GALNT18, USP47) NA 0 NA 0.722726474765616 23 0.152835272608648 1 NA NA -6.10398996053507 LTS-003 chr11 11863829 11895348 31520 * USP47 NA 0 NA 0.967 1 NA NA NA NA NA LTS-003 chr11 11895349 20623181 8727833 * c(LOC100126784, LINC00958, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, NAV2-AS5, PRMT3, SPON1, HTATIP2, OR7E14P, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, CYP2R1, DBX1, COPB1, PLEKHA7, SPTY2D1, TMEM86A, LDHAL6A, RRAS2, MRGPRX1, SERGEF, DKK3, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, LDHA, LDHC, NAV2-AS4, ARNTL, MYOD1, NUCB2, LOC494141, PDE3B, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, NA NA NA NA NA NA NA NA NA LTS-003 PARVA, PSMA1, PTH, RPS13, SAA1, SAA2, SAA3P, SAA4, RASSF10, ABCC8, TEAD1, TPH1, TSG101, CALCA, CALCB, E2F8, CSRP3, FAR1, BTBD10, PTPN5, MICALCL, NAV2, SLC6A5, MICAL2) 0.445322302922144 127 0.096200017253559 0.969813983472659 6381 0.27336246505021 2 1 1 -6.74786649189849 LTS-003 NA NA NA NA LTS-003 chr11 20623182 20625781 2600 * SLC6A5 NA 0 NA 1.747 1 NA NA NA NA NA LTS-003 chr11 20625782 20969089 343308 * c(NELL1, SLC6A5) 0.390218285186307 4 0.0443273805527314 1.42208494639545 213 0.379371919119234 5 3 2 -7.01449476281208 LTS-003 chr11 20969090 20981992 12903 * NELL1 NA 0 NA 1.131 1 NA NA NA NA NA LTS-003 chr11 20981993 30933022 9951030 * c(CCDC179, DCDC5, LINC00678, ARL14EP, MUC15, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, GAS2, LUZP2, KCNA4, FIBIN, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, KIF18A, BBOX1, CCDC34) 0.455518540984304 68 0.0669473654194925 1.03668817000322 2465 0.257869477075387 2 1 1 -7.27898846537899 LTS-003 chr11 30933023 30937026 4004 * DCDC5 NA 0 NA 0.849 1 NA NA NA NA NA LTS-003 chr11 30937027 32781849 1844823 * c(DCDC5, EIF3M, DNAJC24, IMMP1L, ELP4, DCDC1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, RCN1, WT1) 0.437507575358932 14 0.0462730192195442 0.955551149683367 1071 0.237358612882208 2 1 1 -6.73630894895577 LTS-003 chr11 32781850 32852030 70181 * c(CCDC73, PRRG4) NA 0 NA 1.775 1 NA NA NA NA NA LTS-003 chr11 32852031 33765406 913376 * c(C11orf91, HIPK3, CSTF3, KIAA1549L, FBXO3, LINC00294, CSTF3-AS1, TCP11L1, PRRG4, QSER1, DEPDC7, CD59) 0.458209272909315 8 0.029340367122058 1.11946413733062 1178 0.244355994577065 2 1 1 -7.31506302112438 LTS-003 chr11 33765407 35828739 2063333 * c(MIR1343, ELF5, FJX1, ABTB2, PAMR1, FBXO3, EHF, LMO2, CAPRIN1, APIP, TRIM44, NAT10, SLC1A2, PDHX, CAT, CD44) 0.433814232433559 68 0.0643344940841271 0.916465099025186 1742 0.385379925184647 2 1 1 -6.7510918807403 LTS-003 chr11 35828740 47201981 11373242 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, EXT2, F2, ALKBH3, LOC221122, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, HSD17B12, PHF21A, TRIM44, SLC35C1, AMBRA1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, ALX4, SNORD67, TRAF6, SEC14L1P1, NA NA NA NA NA NA NA NA NA LTS-003 C11orf49, ZNF408, PRR5L, ARFGAP2, ACCS, DGKZ, CHST1, API5, TSPAN18, CREB3L1, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.446490543525177 77 0.0624478511079226 0.98103766708466 4341 0.229443608884561 2 1 1 -6.81511497338613 LTS-003 NA NA NA NA LTS-003 chr11 47201982 47236845 34864 * c(DDB2, PACSIN3) NA 0 NA 1.04390980479819 25 0.135422019381389 2 NA NA -5.77237791708273 LTS-003 chr11 47236846 47237774 929 * DDB2 NA 0 NA 1.841 1 NA NA NA NA NA LTS-003 chr11 47237775 47261260 23486 * c(DDB2, ACP2) 0.291 1 NA 1.61435596591123 53 0.240707447894115 4 4 0 -5.7661550996335 LTS-003 chr11 47261261 47380372 119112 * c(NR1H3, MYBPC3, ACP2, SPI1, MADD, SLC39A13) 0.32939534888088 2 0.0197989898732233 1.58447464923247 564 0.364279999591993 6 4 2 -7.1440277793321 LTS-003 chr11 47380373 47510616 130244 * c(CELF1, PSMC3, RAPSN, SPI1, SLC39A13) NA 0 NA 1.25480267712601 296 0.313584168432829 3 NA NA -5.76942721019141 LTS-003 chr11 47510617 48286424 775808 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, FAM180B, NDUFS3, KBTBD4, PTPRJ, AGBL2) 0.334968327633566 4 0.0605557594288107 0.898190814243605 1041 0.183030175524666 2 1 1 -8.08662066427939 LTS-003 chr11 48286425 48327745 41321 * character(0) NA 0 NA 2.029 1 NA NA NA NA NA LTS-003 chr11 48327746 48387983 60238 * c(OR4C3, OR4S1, OR4C45) 0.334791317519413 99 0.0703013934458541 1.56505591600822 202 0.759178951798033 6 4 2 -6.75726199295685 LTS-003 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.951 1 NA NA NA NA NA LTS-003 chr11 48387986 49729456 1341471 * c(FOLH1, TRIM49B, OR4A47, LOC440040, TRIM64C) 0.364825248630851 7 0.0787896536596622 0.983037151179902 335 0.337366286544476 2 1 1 -7.17092822541041 LTS-003 chr11 49729457 51527703 1798247 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 1.02477905186449 127 0.299534578353729 2 NA NA -5.8150067313863 LTS-003 chr11 55035776 56000403 964628 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, TRIM51HP, TRIM48, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.49 1 NA 1.0783872883037 591 0.195103700504374 2 2 0 -5.9627557540718 LTS-003 chr11 56000404 56143570 143167 * c(OR5T2, OR8H1, OR8K3, OR8J1, OR5T3, OR5T1, OR8K1, OR8U8) 0.258522893932879 11 0.0396869568681519 1.21382352957056 177 0.548296097050753 4 3 1 -6.85323041086923 LTS-003 chr11 56143571 56143690 120 * OR8U8 0.445 1 NA 1.5988860005878 3 0.211596313767513 4 4 0 -5.764424329664 LTS-003 chr11 56143691 56468020 324330 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.453694366871505 11 0.0392006493452711 1.06635785739328 261 0.345164196501345 2 1 1 -6.89388394966632 LTS-003 chr11 56468021 56468044 24 * c(OR8U8, OR9G9) 0.252 1 NA 1.2341967471699 2 0.741755013464689 3 3 0 -5.76441036603236 LTS-003 chr11 56468045 56468835 791 * c(OR8U8, OR9G9) 0.251072814257306 10 0.145851560765656 1.48143003575716 25 0.515085196836407 12 9 3 -6.73708875480935 LTS-003 chr11 56468836 56508604 39769 * OR8U8 0.453 1 NA 0.82702081293204 5 0.103898026930255 2 2 0 -5.81325701315558 LTS-003 chr11 56508605 56956743 448139 * c(OR5AK4P, LRRC55, OR9G4, OR5AK2) 0.459330815474509 5 0.0220748725930638 1.04070166590835 157 0.200419758755203 2 1 1 -7.46116010481964 LTS-003 chr11 56956744 62038865 5082122 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, PRG3, SCGB1D2, SCGB1D1, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, FTH1, ZDHHC5, TKFC, DKFZP434K028, TIMM10, GIF, PRPF19, NA NA NA NA NA NA NA NA NA LTS-003 SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, INCENP, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, MIR130A, SCGB2A1, SCGB2A2, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, PRG2, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, SSRP1, STX3, MIR611, TCN1, SERPING1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, SYT7, CD5, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN, FADS2) 0.451353400266108 70 0.0639046261411177 0.983758634775964 7244 0.216688658689357 2 1 1 -6.81336604671261 LTS-003 NA NA NA NA LTS-003 chr11 62038866 63723281 1684416 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, PLA2G16, CHRM1, SLC22A9, HRASLS5, C11orf84, EEF1G, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, RCOR2, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A2, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, INTS5, LGALS12, NA NA NA NA NA NA NA NA NA LTS-003 MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.456373705986047 55 0.0591819200710797 0.935847871003405 3738 0.295583783942522 2 1 1 -6.82272312995538 LTS-003 NA NA NA NA LTS-003 chr11 63723282 63767186 43905 * c(COX8A, MACROD1, OTUB1, NAA40) 0.439 1 NA 0.98435527029864 115 0.187531189167976 2 2 0 -5.76487427519162 LTS-003 chr11 63767187 68855957 5088771 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, CPT1A, CST6, CTSW, GRK2, GPHA2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, ALDH3B2, FKBP2, KDM2A, ATG2A, CLCF1, NA NA NA NA NA NA NA NA NA LTS-003 FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, MALAT1, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 PC, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, SSH3, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, UNC93B1, RAB1B, CAPN1, C11orf68, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.445757157047053 180 0.0752846738912046 0.944793172818672 12503 0.217023829626354 2 1 1 -6.7636314430345 LTS-003 NA NA NA NA LTS-003 chr11 68855958 78365640 9509683 * c(KCNE3, LOC100129216, LOC100133315, KCTD21-AS1, MIR548K, MIR3165, MIR3664, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, CLNS1A, XRRA1, DHCR7, B3GNT6, CTTN, TPCN2, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, AQP11, P4HA3, PGM2L1, KLHL35, NA NA NA NA NA NA NA NA NA LTS-003 LOC283214, KCTD21, ALG1L9P, AAMDC, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, PAK1, COA4, PDE2A, PPME1, MRPL48, RSF1, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, ACER3, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, RAB6A, CCND1, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, INTS4, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.437389114170894 174 0.0900685629036016 0.975920726912667 9591 0.248911462987225 2 1 1 -6.75805464335951 LTS-003 NA NA NA NA LTS-003 chr11 78365641 78365645 5 * TENM4 NA 0 NA 1.28 1 NA NA NA NA NA LTS-003 chr11 78365646 78781161 415516 * TENM4 0.239302054008302 2 0.349310749906154 1.110924749166 312 0.412451841791176 3 2 1 -6.85436153949462 LTS-003 chr11 78781162 85955662 7174501 * c(MIR708, SNORA70E, MIR4300, RAB30-AS1, MIR5579, DLG2, DDIAS, CCDC83, FAM181B, CCDC89, TENM4, RAB30, ANKRD42, PCF11, SYTL2, PRCP, TMEM126B, CREBZF, CCDC90B, PICALM, TMEM126A) 0.447703671818232 28 0.062092949612129 0.916463666151207 1943 0.227296976065151 2 1 1 -6.93620672933913 LTS-003 chr11 85955663 85968679 13017 * EED NA 0 NA 1.03732580316212 45 0.174439231408951 2 NA NA -5.7659436170196 LTS-003 chr11 85968680 85974937 6258 * EED NA 0 NA 1.12 1 NA NA NA NA NA LTS-003 chr11 85974938 86133784 158847 * c(HIKESHI, CCDC81, EED) 0.356 1 NA 1.21932846365738 223 0.227301535058296 3 3 0 -5.78591600640584 LTS-003 chr11 86133785 89486872 3353088 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, FOLH1B, RAB38, GRM5, TRIM77, NOX4, CCDC81, TMEM135, TYR, FZD4, OR7E2P) 0.303100489283012 23 0.070388812891234 1.28850307337671 1155 0.288923043019874 3 2 1 -7.08364350103149 LTS-003 chr11 89486873 89486916 44 * character(0) NA 0 NA 1.062 1 NA NA NA NA NA LTS-003 chr11 89486917 89774448 287532 * c(TRIM64, TRIM49, TRIM64B, TRIM49C) 0.494 1 NA 0.915553939881912 44 0.406007307732689 2 2 0 -5.76677689312868 LTS-003 chr11 89774449 92715508 2941060 * c(NAALAD2, MIR4490, FAT3, CHORDC1, MTNR1B, TRIM49C, UBTFL1) 0.448743151640364 20 0.0535900619223574 1.07038630716227 788 0.270565761448602 2 1 1 -7.04812134811604 LTS-003 chr11 92715509 92715607 99 * MTNR1B NA 0 NA 0.974 1 NA NA NA NA NA LTS-003 chr11 92715608 102825091 10109484 * c(WTAPP1, MIR1304, MIR1260B, MIR3920, JRKL-AS1, LOC101054525, YAP1, GPR83, TMEM123, SLC36A4, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, ANGPTL5, C11orf54, BIRC2, BIRC3, HEPHL1, VSTM5, IZUMO1R, KDM4E, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, MTNR1B, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, CEP126, SCARNA9, MMP27, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, NA NA NA NA NA NA NA NA NA LTS-003 TAF1D, CCDC82, TMEM133, MAML2, C11orf70, CEP295, JRKL, MTMR2, MMP20, MED17, CEP57) 0.439063313232527 85 0.0972777823903213 0.959761282243599 5205 0.245409068321919 2 1 1 -6.73446595461227 LTS-003 NA NA NA NA LTS-003 chr11 102825092 102984894 159803 * c(MMP13, DYNC2H1, DCUN1D5) 0 1 NA 0.941868586588956 77 0.38763248699777 2 2 0 -5.76464603216691 LTS-003 chr11 102984895 107224460 4239566 * c(CASP12, MIR4693, CARD16, KBTBD3, CWF19L2, GRIA4, GUCY1A2, DDI1, CARD17, CARD18, AASDHPPT, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, MSANTD4) 0.410098194820938 24 0.154839743007061 0.984101763269315 1521 0.300558045726321 2 1 1 -6.76473214326839 LTS-003 chr11 107224461 107260710 36250 * CWF19L2 NA 0 NA 1.334 1 NA NA NA NA NA LTS-003 chr11 107260711 107536857 276147 * c(CWF19L2, ELMOD1, LOC643923, ALKBH8) 0.338852769474028 7 0.054070500715446 1.31670035710839 255 0.34349599367194 3 2 1 -6.77333069008279 LTS-003 chr11 107536858 108009927 473070 * c(ACAT1, SLC35F2, RAB39A, ELMOD1, SLN, CUL5) 0.435 1 NA 1.29112528994181 378 0.314168513614045 3 3 0 -5.7718670084559 LTS-003 chr11 108009928 108032962 23035 * c(ACAT1, NPAT) 0.463 1 NA 1.31560040157774 102 0.295691024392737 3 3 0 -5.76457376114985 LTS-003 chr11 108032963 108040451 7489 * NPAT NA 0 NA 0.834 1 NA NA NA NA NA LTS-003 chr11 108040452 118084099 10043648 * c(LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, LOC100652768, RBM7, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, CEP164, EXPH5, SIK2, SIK3, BACE1, CADM1, ANKK1, RNF214, REXO2, TIMM8B, LINC00900, HSPB2, APOA1, HTR3A, APOA4, C11orf53, APOC3, PLET1, IL10RA, IL18, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NA NA NA NA NA NA NA NA NA LTS-003 NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, FXYD6, C11orf71, POU2AF1, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, TEX12, TMPRSS4, DSCAML1, ARHGAP20, USP28, PTS, RDX, SCN2B, SCN4B, SDHD, CLDN25, C11orf1, TAGLN, ZBTB16, ALG9, TMPRSS5, BCO2, TMPRSS13, BUD13, DIXDC1, ZC3H12C, ZPR1, PCSK7, HTR3B, ZW10, FDXACB1) 0.454654432533953 134 0.0545999339623057 0.952685921608755 7744 0.220685877034326 2 1 1 -6.8225608421451 LTS-003 NA NA NA NA LTS-003 chr11 118084100 118085458 1359 * JAML NA 0 NA 0.836 1 NA NA NA NA NA LTS-003 chr11 118085459 118367121 281663 * c(LOC100131626, MPZL2, ATP5L, JAML, MPZL3, KMT2A, CD3D, CD3E, CD3G, UBE4A) 0.462096833354963 6 0.0382099463490856 0.884971733035616 741 0.831793170636537 2 1 1 -7.03583370744203 LTS-003 chr11 118367122 118368666 1545 * KMT2A NA 0 NA 1.144 1 NA NA NA NA NA LTS-003 chr11 118368667 118534166 165500 * c(TREH, TTC36, PHLDB1, ARCN1, KMT2A, IFT46, TMEM25) 0.380156700280449 7 0.0536305705287395 1.29209604701066 806 0.294420192595746 3 2 1 -6.88953014225253 LTS-003 chr11 118534167 118550131 15965 * TREH NA 0 NA 0.865 1 NA NA NA NA NA LTS-003 chr11 118550132 119148513 598382 * c(MIR3656, MIR4492, HYOU1, TREH, DDX6, DPAGT1, SLC37A4, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, TRAPPC4, VPS11, RPS25, ABCG4, CXCR5, RPL23AP64, UPK2, NLRX1, PDZD3, CBL, C2CD2L) 0.463809374668094 35 0.044106669782786 0.928771195762619 1659 0.208219851467301 2 1 1 -6.9988610861296 LTS-003 chr11 119148514 134856661 15708148 * c(LOC100128239, PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, NA NA NA NA NA NA NA NA NA LTS-003 MIR4697HG, LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, THY1, ZNF202, RNF26, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, MFRP, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, GLB1L2, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.446085451924847 277 0.0538081055422677 0.987736417816515 11278 0.371806164285044 2 1 1 -6.81572250328098 LTS-003 NA NA NA NA LTS-003 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.938 1 NA NA NA NA NA LTS-003 chr12 90923 250239 159317 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.413 1 NA 0.899227862346584 55 0.151090647752877 2 2 0 -5.78235218497799 LTS-003 chr12 250240 6103399 5853160 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, IQSEC3, NDUFA9, NINJ2, NTF3, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CCDC77, NA NA NA NA NA NA NA NA NA LTS-003 CRACR2A, DYRK4, CCND2, CACNA2D4) 0.437437447196119 128 0.0879450853034746 0.983096534282411 5163 0.372838733521656 2 1 1 -6.74783278543868 LTS-003 NA NA NA NA LTS-003 chr12 6103400 6103518 119 * VWF NA 0 NA 1.184 1 NA NA NA NA NA LTS-003 chr12 6103519 6153534 50016 * VWF 0.393550671254266 2 0.00212132034355964 1.29384197161786 108 0.262926738957535 20 12 8 -9.57546443639094 LTS-003 chr12 6153535 6153659 125 * VWF 0.282 1 NA 1.55221927134817 3 0.413917866248849 4 4 0 -5.76441680833073 LTS-003 chr12 6153660 7362905 1209246 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, CLSTN3, NCAPD2 NA NA NA NA NA NA NA NA NA LTS-003 ) 0.360402829045957 78 0.0530786961534285 1.27166361780966 3631 0.267426088616461 3 2 1 -6.78979725095373 LTS-003 NA NA NA NA LTS-003 chr12 7362906 7362954 49 * PEX5 NA 0 NA 1.965 1 NA NA NA NA NA LTS-003 chr12 7362955 8291176 928222 * c(SLC2A14, CLEC4C, NECAP1, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, CLEC4A, FOXJ2, PEX5, POU5F1P3, SLC2A3, C3AR1, NANOG, CD163, GDF3) 0.275643293433818 25 0.0750085106282392 1.53819672267018 1092 0.514760871848723 4 3 1 -6.77062127732935 LTS-003 chr12 8291177 8374686 83510 * c(ZNF705A, FAM66C, CLEC4A, FAM90A1) NA 0 NA 0.768 1 NA NA NA NA NA LTS-003 chr12 8374687 9590665 1215979 * c(LINC00987, KLRG1, A2ML1, A2M-AS1, PHC1, A2M, LINC00612, CLEC4E, A2MP1, CLEC4D, LINC00937, M6PR, DDX12P, FAM90A1, AICDA, RIMKLB, PZP, LOC642846, FAM86FP, MFAP5, CLEC6A) 0.347321407528056 35 0.108841747736887 1.20771099136615 1450 0.316240328879876 3 2 1 -6.83394418987496 LTS-003 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.069 1 NA NA NA NA NA LTS-003 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.0689630459777452 93 0.0793477000517741 0 NA NA -9.05933288606997 LTS-003 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.781 1 NA NA NA NA NA LTS-003 chr12 9747241 10573131 825891 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.377683563684367 41 0.080096785965176 1.15476053496765 1111 0.317449325657512 3 2 1 -6.9182156453041 LTS-003 chr12 10573132 10600248 27117 * c(KLRC1, KLRC2, KLRC3) 0.411200824110617 4 0.0438634243989226 1.76601314059824 108 0.65793126778758 5 3 2 -6.75964426235019 LTS-003 chr12 10600249 10601795 1547 * KLRC1 NA 0 NA 1.033 1 NA NA NA NA NA LTS-003 chr12 10601796 11286012 684217 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.339760803037068 48 0.0755230343895441 1.16737348518882 735 0.331442538016168 3 2 1 -6.83530956926488 LTS-003 chr12 11286013 11286088 76 * c(PRH1-PRR4, TAS2R30, PRB4) 0.27 1 NA 1.792 1 NA NA NA NA NA LTS-003 chr12 11286089 19873574 8587486 * c(SMIM10L1, LOC100506314, PRH1-PRR4, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, C12orf60, EMP1, EPS8, ETV6, TAS2R30, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, PIK3C2G, PLEKHA5, MANSC1, PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, PRB2, MIR613, MIR614, SKP1P2, NA NA NA NA NA NA NA NA NA LTS-003 SLC15A5, BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3) 0.344289859976362 83 0.100974532944014 1.27632599265347 4114 0.499279583556504 3 2 1 -6.81678596947856 LTS-003 NA NA NA NA LTS-003 chr12 19873575 19873726 152 * character(0) NA 0 NA 1.05 1 NA NA NA NA NA LTS-003 chr12 19873727 20876247 1002521 * c(LOC100506393, PDE3A, SLCO1C1) 0.382089390570177 6 0.190371916696415 1.08686353028167 248 0.488137589873503 2 1 1 -6.81641720673653 LTS-003 chr12 20876248 21054918 178671 * c(SLCO1B3, SLCO1B7, SLCO1C1) 0.494 1 NA 1.03216449774672 107 0.326631995660195 2 2 0 -5.76966089930798 LTS-003 chr12 21054919 21954178 899260 * c(ABCC9, SLCO1B1, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, GOLT1B, RECQL, SLCO1A2, PYROXD1, SPX) 0.457758482288364 40 0.0402806739306543 0.99392587154531 963 0.276183771617806 2 1 1 -6.93785429580944 LTS-003 chr12 21954179 21958003 3825 * ABCC9 NA 0 NA 0.864 1 NA NA NA NA NA LTS-003 chr12 21958004 25147074 3189071 * c(MIR920, ABCC9, LINC00477, C12orf77, ETNK1, CMAS, BCAT1, ST8SIA1, SOX5, C2CD5) 0.449539610437677 24 0.0236455943134188 0.930524694014283 1060 0.224474998146521 2 1 1 -7.0085789817806 LTS-003 chr12 25147075 25150385 3311 * C12orf77 NA 0 NA 0.871231468917307 31 0.168144056261035 2 NA NA -5.76507352946195 LTS-003 chr12 25150386 25219276 68891 * c(C12orf77, LRMP) NA 0 NA 1.267 1 NA NA NA NA NA LTS-003 chr12 25219277 25236309 17033 * LRMP 0.398 1 NA 1.29082628602947 21 0.222647586151406 3 3 0 -5.76495017637414 LTS-003 chr12 25236310 30906807 5670498 * c(MANSC4, MIR4302, RASSF8-AS1, OVCH1-AS1, IPO8, RASSF8, ETFRF1, LMNTD1, STK38L, FGFR1OP2, SMCO2, OVCH1, ITPR2, KRAS, REP15, LRMP, ERGIC2, TM7SF3, CASC1, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, MRPS35, CAPRIN2, C12orf71, BHLHE41, SSPN, TMTC1, PPFIBP1, MED21) 0.363062306275665 65 0.0662041132814617 1.27724376149333 3394 0.331656057966745 3 2 1 -6.86351167586368 LTS-003 chr12 30906808 30906833 26 * CAPRIN2 NA 0 NA 1.398 1 NA NA NA NA NA LTS-003 chr12 30906834 31288963 382130 * c(LINC00941, DDX11-AS1, DDX11, TSPAN11, CAPRIN2) 0.373841220196642 13 0.0608215127258145 1.46254401575946 350 0.353055694852274 3 2 1 -6.8148448561419 LTS-003 chr12 31288964 31288976 13 * character(0) NA 0 NA 1.114 1 NA NA NA NA NA LTS-003 chr12 31288977 32552868 1263892 * c(RNU6-78P, DENND5B-AS1, DENND5B, AMN1, ETFBKMT, H3F3C, KIAA1551, FAM60A, BICD1, FLJ13224) 0.30374291043606 17 0.14177148659644 1.22248087216612 831 0.359313165081604 3 2 1 -6.8684283479436 LTS-003 chr12 32552869 33592681 1039813 * c(DNM1L, FGD4, SYT10, YARS2, PKP2) 0.390719241162899 6 0.185214200319522 0.978066768199862 638 0.244232166601748 2 1 1 -6.76968545456495 LTS-003 chr12 33592682 34182671 589990 * c(SYT10, ALG10) NA 0 NA 1.05658930128522 67 0.262655687931049 2 NA NA -5.81104797749474 LTS-003 chr12 38710341 39117479 407139 * c(ALG10B, CPNE8) 0.493 1 NA 1.01656007017573 127 0.210952357210991 2 2 0 -5.78224616594797 LTS-003 chr12 39117480 40964609 1847130 * c(SLC2A13, LRRK2, CPNE8, ABCD2, C12orf40, KIF21A) 0.424545913161164 38 0.108174168738943 0.982871554257608 1660 0.282865792069851 2 1 1 -6.74550069724966 LTS-003 chr12 40964610 41302100 337491 * CNTN1 NA 0 NA 1.397 1 NA NA NA NA NA LTS-003 chr12 41302101 42629845 1327745 * c(YAF2, CNTN1, GXYLT1, PDZRN4) 0.334432191633958 16 0.0615762061730557 1.2835488037313 531 0.306431609929196 3 2 1 -6.81248709332961 LTS-003 chr12 42629846 42631379 1534 * YAF2 NA 0 NA 0.847 1 NA NA NA NA NA LTS-003 chr12 42631380 48132041 5500662 * c(PCED1B-AS1, MIR4698, YAF2, RAPGEF3, PRICKLE1, ANO6, ARID2, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, SLC38A2, SLC38A4, TWF1, RNY5, RPAP3, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, ENDOU, PCED1B, SCAF11) 0.43140786253158 35 0.134025753200676 0.949866018241574 2492 0.243842574790516 2 1 1 -6.7397495076749 LTS-003 chr12 48132042 48132419 378 * RAPGEF3 NA 0 NA 1.362 1 NA NA NA NA NA LTS-003 chr12 48132420 48373181 240762 * c(RAPGEF3, COL2A1, HDAC7, SLC48A1, VDR, TMEM106C) 0.376245744348248 16 0.0377180328225108 1.28147122378507 684 0.267142334024969 3 2 1 -6.9656622065871 LTS-003 chr12 48373182 48442893 69712 * c(COL2A1, SENP1) NA 0 NA 1.23575085648239 279 0.229997924680338 3 NA NA -5.77150599251227 LTS-003 chr12 48442894 48457479 14586 * SENP1 NA 0 NA 0.881 1 NA NA NA NA NA LTS-003 chr12 48457480 48512285 54806 * c(SENP1, PFKM) 0.418 1 NA 0.91208500702067 97 0.207936842467434 2 2 0 -5.76641559985329 LTS-003 chr12 48512286 57605313 9093028 * c(HOTAIR, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1228, MIR1293, LOC100335030, BLOC1S1-RDH5, MIR4701, MIR3198-2, LOC100652999, HOXC13-AS, CDK2, RNF41, GDF11, CNPY2, TUBA1B, MCRS1, PTGES3, ATF7, BAZ2A, ADCY6, GALNT6, KRT71, GPR182, LARP4, DCD, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, ASB8, MYL6B, KRT72, CS, BCDIN3D, KRT80, DGKA, GRASP, NA NA NA NA NA NA NA NA NA LTS-003 KRT78, METTL7B, EIF4B, CELA1, ERBB3, COPZ1, FAIM2, DDN, NEMP1, ESYT1, TNS2, KCNH3, CBX5, ANP32D, SMUG1, OR6C74, OR6C3, LINC00935, PRPF40B, METTL7A, LETMD1, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, TMPRSS12, KRT6C, ORMDL2, RACGAP1, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, IGFBP6, AQP2, AQP5, AQP6, ITGA5, ITGA7, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LOC400043, FIGNL2, OR6C65, OR6C68, LRP1, MIR196A2, ASIC1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MYO1A, ATF1, NAB2, NACA, NFE2, SLC11A2, PA2G4, ATP5B, DHH, PCBP2, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, IL23A, ATP5G2, PFDN5, PFKM, GPR84, PRR13, POU6F1, KANSL2, PPP1R1A, PRIM1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, HIGD1C, RPL41, RPS26, SCN8A, IKZF4, GLYCAM1, PMEL, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 STAT6, SNORA2C, SUOX, TAC3, TARBP2, SNORD59B, MIR615, TMBIM6, TFCP2, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, NABP2, DNAJC22, KMT2D, AAAS, CSRNP2, FAM186B, PYM1, SARNP, SOAT2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, CCDC65, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.454334298913447 299 0.0689095854327435 0.961762993992504 19185 0.333723410330733 2 1 1 -6.78330278391235 LTS-003 NA NA NA NA LTS-003 chr12 57605314 57651810 46497 * c(NXPH4, R3HDM2, STAC3, LRP1, NDUFA4L2, SHMT2) 0 1 NA 0.95460269386669 301 0.236020924330953 2 2 0 -5.76442697036881 LTS-003 chr12 57651811 57921784 269974 * c(MBD6, DDIT3, R3HDM2, GLI1, INHBC, MARS, ARHGAP9, INHBE) NA 0 NA 0.953699121919751 640 0.196405303962965 2 NA NA -5.76460117413904 LTS-003 chr12 57921785 58115286 193502 * c(DCTN2, OS9, MBD6, ARHGEF25, DTX3, B4GALNT1, KIF5A, SLC26A10, PIP4K2C) 0.231849192075224 9 0.0563804043972726 0.607723960743048 795 0.162235584389776 1 1 0 -7.91780853230497 LTS-003 chr12 58115287 58216989 101703 * c(AGAP2-AS1, TSFM, CTDSP2, CDK4, AVIL, OS9, AGAP2, CYP27B1, METTL21B, METTL1, TSPAN31, MARCH9) 0.467 1 NA 0.629165395339919 761 0.132062699285748 1 1 0 -5.80910388043742 LTS-003 chr12 58216990 58220872 3883 * c(CTDSP2, MIR26A2) 0.362832040535574 19 0.128909120714978 0.720918225098728 68 0.239943955173352 3 2 1 -6.75295897882096 LTS-003 chr12 58220873 60127590 1906718 * c(LOC100506844, CTDSP2, LRIG3, ATP23, SLC16A7) 0.234 1 NA 0.630524927295966 269 0.139526184064157 1 1 0 -6.46198789841149 LTS-003 chr12 60127591 65882068 5754478 * c(MIR548Z, TMEM5, WIF1, XPOT, C12orf56, C12orf66, MON2, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, FLJ41278, MIRLET7I, AVPR1A, PPM1H, SRGAP1, MIR548C, SLC16A7, USP15) 0.234402125558558 40 0.0458995279569046 0.633904633173993 2512 0.277879368959715 1 1 0 -9.00871533987634 LTS-003 chr12 65882069 66151910 269842 * RPSAP52 NA 0 NA 1.161 1 NA NA NA NA NA LTS-003 chr12 66151911 66348134 196224 * c(RPSAP52, HMGA2) 0.201912288098308 4 0.0214067746286076 0.982959892161082 254 0.18157063777445 5 4 1 -8.90521250396393 LTS-003 chr12 66348135 66349812 1678 * HMGA2 0.165 1 NA 0.87734851738142 31 0.225388381645206 2 2 0 -5.76457124246925 LTS-003 chr12 66349813 70194118 3844306 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, RAB3IP, CPM, BEST3, GRIP1, IFNG, LRRC10, LYZ, MDM2, IL22, TMBIM4, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, HMGA2, LLPH, DYRK2, HELB) 0.151961830994089 59 0.0362107604183615 0.936748577346952 2682 0.26376177395578 2 2 0 -8.31493643633213 LTS-003 chr12 70194119 70195375 1257 * RAB3IP NA 0 NA 1.424 1 NA NA NA NA NA LTS-003 chr12 70195376 70352558 157183 * RAB3IP 0.0931649375969372 2 0.0169705627484771 1.32626196754244 293 0.3960688600366 2 2 0 -6.92945559301657 LTS-003 chr12 70352559 70671869 319311 * CNOT2 NA 0 NA 1.549 1 NA NA NA NA NA LTS-003 chr12 70671870 71078122 406253 * c(KCNMB4, CNOT2, PTPRB, PTPRR) 0.102424693003472 18 0.0315655247531413 1.55758367719226 605 0.46057191544859 2 2 0 -7.16721246654928 LTS-003 chr12 71078123 71078445 323 * PTPRR NA 0 NA 0.896 1 NA NA NA NA NA LTS-003 chr12 71078446 71533534 455089 * c(PTPRR, TSPAN8) 0.175605765554099 7 0.0301298775936698 0.890402467108151 129 0.222525137668489 1 1 0 -8.27274439168797 LTS-003 chr12 71533535 71833681 300147 * c(TSPAN8, LGR5) 0.391 1 NA 0.830000431912888 17 0.22929279060522 2 2 0 -5.83622548415845 LTS-003 chr12 71833682 75601520 3767839 * c(LOC100507377, TPH2, ZFC3H1, RAB21, TRHDE-AS1, TRHDE, KCNC2, TMEM19, ATXN7L3B, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.452538586800626 16 0.0342188422753703 0.991975580929971 1276 0.20950793360405 2 1 1 -6.95252229306378 LTS-003 chr12 75601521 75785167 183647 * c(GLIPR1L2, GLIPR1L1, KCNC2, CAPS2) NA 0 NA 1.24830292918379 185 0.413175981603944 3 NA NA -5.76903517905797 LTS-003 chr12 75785168 75785253 86 * GLIPR1L2 NA 0 NA 0.936 1 NA NA NA NA NA LTS-003 chr12 75785254 75881519 96266 * c(GLIPR1, GLIPR1L2) 0.461 1 NA 0.861338093546329 98 0.180443745812659 2 2 0 -5.78526152613665 LTS-003 chr12 75881520 75884173 2654 * GLIPR1 NA 0 NA 1.555 1 NA NA NA NA NA LTS-003 chr12 75884174 75896656 12483 * c(GLIPR1, KRR1) 0.349416591200612 9 0.0578966991958763 1.36726132128709 145 1.34075617202952 3 2 1 -6.73492288271546 LTS-003 chr12 75896657 75896664 8 * KRR1 0.417 1 NA 0.792 1 NA NA NA NA NA LTS-003 chr12 75896665 78225460 2328796 * c(KRR1, OSBPL8, E2F7, CSRP2, PHLDA1, ZDHHC17, NAP1L1, BBS10, NAV3) 0.443400786257003 16 0.0526313832233203 0.908718524320694 1030 0.220328544592069 2 1 1 -6.83680181401491 LTS-003 chr12 78225461 78334025 108565 * NAV3 NA 0 NA 1.578 1 NA NA NA NA NA LTS-003 chr12 78334026 78606766 272741 * NAV3 0.40415661317351 3 0.0260576284415908 1.38181602395242 316 0.410160852611594 5 3 2 -6.92279220658234 LTS-003 chr12 79611223 88939946 9328724 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, C12orf29, RASSF9) 0.413556405688325 46 0.143641382825088 1.00935684815028 3115 0.321458005610996 2 1 1 -6.87787370530198 LTS-003 chr12 88939947 88973995 34049 * KITLG NA 0 NA 0.956 1 NA NA NA NA NA LTS-003 chr12 88973996 101336308 12362313 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, SLC17A8, LINC01619, POC1B, GAS2L3, MRPL42, HAL, APAF1, LINC00936, C12orf74, LTA4H, LUM, MIR135A2, KITLG, LINC00615, PLEKHG7, MIR331, ATP2B1, CEP83, CDK17, NA NA NA NA NA NA NA NA NA LTS-003 SLC25A3, VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TMPO, NR2C1, LOC728084, UBE2N, USP44, EEA1, GALNT4, CRADD, SOCS2, NR1H4) 0.449433865383656 116 0.0714556566659716 0.939451694237549 6121 0.259663760523928 2 1 1 -6.8115290720313 LTS-003 NA NA NA NA LTS-003 chr12 101336309 101365072 28764 * ANO4 NA 0 NA 1.208 1 NA NA NA NA NA LTS-003 chr12 101365073 101801639 436567 * c(ANO4, SLC5A8, UTP20, ARL1) 0.382955700770482 9 0.0401158045884384 1.29997423860591 618 0.304423196052895 3 2 1 -7.06239505066527 LTS-003 chr12 101801640 101870547 68908 * SPIC NA 0 NA 0.872 1 NA NA NA NA NA LTS-003 chr12 101870548 110815780 8945233 * c(USP30-AS1, LOC100287944, MIR3652, MIR3922, LOC100505978, MIR4497, CKAP4, PRDM4, PWP1, FICD, C12orf45, ASCL4, BTBD11, SPIC, ALKBH2, FOXN4, CMKLR1, CRY1, ALDH1L2, DAO, KIAA1033, ISCU, CORO1C, TTC41P, TCP11L2, LINC00485, MYO1H, IFT81, HCFC2, ACACB, MMAB, TMEM119, IGF1, C12orf42, C12orf75, C12orf76, ASCL1, MVK, MYBPC1, NFYB, ATP2A2, EID3, SYCP3, CHST11, PAH, CCDC53, GLTP, ANAPC7, NT5DC3, PMCH, SSH1, NA NA NA NA NA NA NA NA NA LTS-003 PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, POLR3B, CHPT1, TRPV4, RFX4, SELPLG, TDG, HSP90B1, C12orf73, LOC728739, TXNRD1, UNG, NUP37, GNPTAB, MTERF2, GLT8D2, KCTD10, SLC41A2, TCHP, USP30, FAM222A, FAM222A-AS1, ANKRD13A, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1) 0.453233214791808 210 0.058479710432249 0.952745757023962 8850 0.597310075215474 2 1 1 -6.79596929026333 LTS-003 NA NA NA NA LTS-003 chr12 110815781 110819597 3817 * ANAPC7 NA 0 NA 0.849 1 NA NA NA NA NA LTS-003 chr12 110819598 113266279 2446682 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, FAM216A, MYL2, GPN3, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, HVCN1, MAPKAPK5, ADAM1A, TMEM116) 0.45264676943972 16 0.0488410687843745 0.908256446381974 3032 0.214711427833054 2 1 1 -6.91298417173321 LTS-003 chr12 113266280 113269541 3262 * RPH3A NA 0 NA 1.018 1 NA NA NA NA NA LTS-003 chr12 113269542 117014183 3744642 * c(LINC00173, MIR4472-2, SDS, SDSL, IQCD, DTX1, PLBD2, RPH3A, MED13L, TBX5-AS1, CFAP73, OAS1, OAS2, OAS3, TPCN1, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, DDX54, SLC8B1, RASAL1, RITA1, RBM19) 0.453589752071 38 0.0488967399798221 0.980241104664624 2347 0.230334777350967 2 1 1 -6.84279062555876 LTS-003 chr12 117014184 117014239 56 * MAP1LC3B2 NA 0 NA 1.337 1 NA NA NA NA NA LTS-003 chr12 117014240 117768755 754516 * c(FBXO21, FBXW8, NOS1, TESC, MAP1LC3B2, C12orf49, RNFT2, HRK) 0.353083206189522 15 0.043574020219567 1.26674937689089 816 0.326524467528182 3 2 1 -6.75382581766539 LTS-003 chr12 117768756 120123699 2354944 * c(CIT, LINC00934, CCDC60, HSPB8, KSR2, TMEM233, NOS1, PEBP1, TAOK3, VSIG10, PRKAB1, WSB2, RFC5, SUDS3, SRRM4) 0.45608783675925 23 0.100066262631299 0.990273147567126 1257 0.250285578664377 2 1 1 -6.78270198871661 LTS-003 chr12 120123700 120123702 3 * CIT NA 0 NA 0.869 1 NA NA NA NA NA LTS-003 chr12 120123703 123212740 3089038 * c(MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, NA NA NA NA NA NA NA NA NA LTS-003 DYNLL1, SRSF9, HCAR3, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.451719141103322 118 0.0691210981249386 0.923693233648535 5171 0.238139698473235 2 1 1 -6.81934541666495 LTS-003 NA NA NA NA LTS-003 chr12 123212741 123335851 123111 * c(HCAR1, CCDC62, DENR, HIP1R) 0 1 NA 0.898624525361387 239 0.225580567390531 2 2 0 -5.77077023778951 LTS-003 chr12 123335852 124021002 685151 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, SNRNP35, RILPL2, ABCB9, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, OGFOD2, VPS37B, CDK2AP1, HIP1R, C12orf65) 0.350563001302635 15 0.103293064350213 0.906325140491888 1338 0.202857234684233 2 1 1 -7.1368303306432 LTS-003 chr12 124021003 124069138 48136 * c(MIR3908, TMED2) NA 0 NA 1.3 1 NA NA NA NA NA LTS-003 chr12 124069139 124106524 37386 * c(TMED2, EIF2B1, DDX55) 0.325 1 NA 1.19782103730442 208 0.25443354023827 3 3 0 -5.76990290365582 LTS-003 chr12 124106525 124107146 622 * EIF2B1 NA 0 NA 1.02 1 NA NA NA NA NA LTS-003 chr12 124107147 124496115 388969 * c(ZNF664-FAM101A, ZNF664, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, TCTN2, CCDC92) 0.377466931208156 11 0.187903311693686 0.96400772628892 979 0.303997772371481 2 1 1 -6.7875225205826 LTS-003 chr12 124496116 124499542 3427 * c(ZNF664-FAM101A, ZNF664) 0.472 1 NA 0.904205078268362 67 0.147941674426485 2 2 0 -5.76474864546583 LTS-003 chr12 124499543 133298771 8799229 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1, NA NA NA NA NA NA NA NA NA LTS-003 SCARB1, NCOR2) 0.45669482493569 84 0.0396291091717492 0.982689078491129 4286 0.227511745438301 2 1 1 -6.97266582595614 LTS-003 NA NA NA NA LTS-003 chr12 133298772 133299101 330 * PGAM5 NA 0 NA 0.726 1 NA NA NA NA NA LTS-003 chr12 133299102 133808129 509028 * c(ZNF605, ZNF891, ZNF268, PGAM5, ANKLE2, GOLGA3, CHFR, ANHX, ZNF10, ZNF140) 0.455181698278612 36 0.0484588108521696 0.896045663959071 1466 0.20790188969594 2 1 1 -6.87565444052157 LTS-003 chr12 133808130 133812708 4579 * ANHX NA 0 NA 0.837300571815984 43 0.197178472315385 2 NA NA -5.7657341216556 LTS-003 chr13 19271620 19271676 57 * character(0) 0.329 1 NA 0.515 1 NA NA NA NA NA LTS-003 chr13 19271677 24880809 5609133 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00417, LINC00424, SPATA13-AS1, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.231829922125264 74 0.0603799214391273 0.62569968267088 2685 0.198283900807239 1 1 0 -8.62533700927876 LTS-003 chr13 24880810 24895587 14778 * c(SPATA13, C1QTNF9) 0.11279609383856 2 0.162634559672906 1.35441449417945 47 1.49030054801179 10 9 1 -6.73822860809908 LTS-003 chr13 24895588 24895593 6 * c(SPATA13, C1QTNF9) NA 0 NA 0.774 1 NA NA NA NA NA LTS-003 chr13 24895594 33350527 8454934 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, SHISA2, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, NA NA NA NA NA NA NA NA NA LTS-003 CENPJ, RNF17, RNF6, RPL21, SNORA27, TPTE2P1, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.256492324625321 100 0.0703082527448976 0.627722317401804 5633 0.328498799117724 1 1 0 -8.4800297175573 LTS-003 NA NA NA NA LTS-003 chr13 33350528 41185340 7834813 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.237757552116654 77 0.0497769872738824 0.66538793668853 3097 0.186611983689685 1 1 0 -10.793835695094 LTS-003 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 0.474 1 NA NA NA NA NA LTS-003 chr13 41239781 61986918 20747138 * c(LINC00462, TPT1-AS1, MIR1297, MIR759, MIR320D1, MIR3169, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, DIAPH3-AS1, DIAPH3-AS2, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, OLFM4, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, NA NA NA NA NA NA NA NA NA LTS-003 DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, PCDH17, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 SERPINE3, PCDH20, SNORA31, MIR621, TPT1, PRR20B, PRR20D, PRR20E, NAA16, RNASEH2B, DHRS12, RUBCNL, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.23166985738516 137 0.0510952782371966 0.611389429788829 7700 0.301070784900426 1 1 0 -8.94145282408708 LTS-003 NA NA NA NA LTS-003 chr13 61986919 66540676 4553758 * c(OR7E156P, PCDH20) NA 0 NA 0.727540667451487 45 0.140326826308508 1 NA NA -9.99432585535657 LTS-003 chr13 66540677 66792317 251641 * character(0) NA 0 NA 1.456 1 NA NA NA NA NA LTS-003 chr13 66792318 67798928 1006611 * c(PCDH9-AS2, PCDH9-AS3, PCDH9) 0.474 1 NA 1.23007340006012 64 0.313634162515542 3 3 0 -5.82446242319206 LTS-003 chr13 67798929 70681682 2882754 * c(LINC00550, PCDH9, KLHL1, ATXN8OS) 0.344399915266271 4 0.230299080907125 1.13120294309547 163 0.653602446557444 3 2 1 -6.86668386777783 LTS-003 chr13 70681683 80911036 10229354 * c(MIR3665, RBM26-AS1, LINC00331, LINC00381, LINC00446, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, SPRY2, PIBF1, KLF12, KCTD12, CLN5, SLAIN1, DACH1, COMMD6, EDNRB, DIS3, MYCBP2, FBXL3, LINC00347, LMO7, MZT1, POU4F1, NDFIP2, KLHL1, ATXN8OS, RBM26, CTAGE11P, KLF5, BTF3P11, LMO7DN, ACOD1, UCHL3, RNF219, BORA, SCEL, TBC1D4) 0.438780568846374 38 0.110120201362974 0.957985447189173 3118 0.236520359172296 2 1 1 -6.73456970239072 LTS-003 chr13 80911037 98897545 17986509 * c(MIR3170, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00559, CLDN10-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, SOX21, SLITRK1, RNF113B, LINC00410, GPR180, DCT, GPC5, DZIP1, TGDS, SLITRK5, HS6ST3, OXGR1, IPO5, MIR19B1, MIR17HG, UGGT2, DNAJC3, RAP2A, MIR4500HG, MIR622, SLITRK6, CLDN10) 0.436844508958798 29 0.150482237958128 1.02414995048679 1962 0.243593822310283 2 1 1 -7.40839625196072 LTS-003 chr13 98897546 98996026 98481 * FARP1 NA 0 NA 1.235 1 NA NA NA NA NA LTS-003 chr13 98996027 99520620 524594 * c(FARP1, DOCK9, SLC15A1, STK24) 0.376249611603361 21 0.0470654559401812 1.34664333362777 656 0.298236053089666 3 2 1 -6.88025797411423 LTS-003 chr13 99520621 99532106 11486 * DOCK9 NA 0 NA 0.687 1 NA NA NA NA NA LTS-003 chr13 99532107 101278515 1746409 * c(FKSG29, UBAC2-AS1, MIR4306, MIR548AN, PCCA-AS1, CLYBL, GPR183, DOCK9, GPR18, UBAC2, PCCA, MIR623, ZIC2, TMTC4, ZIC5, GGACT, TM9SF2) 0.469367203609994 4 0.019704060495238 0.98117441135723 817 0.304897752984311 2 1 1 -8.20833858298715 LTS-003 chr13 101278516 101287007 8492 * TMTC4 NA 0 NA 1.59 1 NA NA NA NA NA LTS-003 chr13 101287008 109661359 8374352 * c(BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, LINC00443, NALCN-AS1, TNFSF13B, METTL21EP, LINC00343, EFNB2, METTL21C, ERCC5, FGF14, MYO16, NALCN, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LIG4, BIVM, ARGLU1, CCDC168, SLC10A2, TPP2, LINC00460, FAM155A, KDELC1, TMTC4, ABHD13, TEX30, ITGBL1) 0.438049358394598 52 0.03917605387972 1.20815037384307 2188 0.304224223759801 2 1 1 -8.749973925534 LTS-003 chr13 109661360 109707436 46077 * MYO16 0 1 NA 1.19774734151218 37 0.277905346082765 3 3 0 -5.77008995048306 LTS-003 chr13 109707437 109860352 152916 * c(MYO16-AS1, MYO16) 0.353496755248043 4 0.210656117879353 1.21996232463624 111 0.304390494222426 3 2 1 -6.74449196229754 LTS-003 chr13 110406191 111373368 967178 * c(COL4A2-AS1, COL4A1, COL4A2, ING1, RAB20, NAXD, CARS2, IRS2) 0.291493535466725 52 0.0429031451557271 1.65319487755779 1076 0.550099394766924 4 3 1 -6.8468677870887 LTS-003 chr13 111373369 111567230 193862 * c(LINC00346, ING1, ANKRD10) NA 0 NA 1.54813984624504 99 0.291055680219159 4 NA NA -5.78633657000699 LTS-003 chr13 111567231 111567277 47 * ANKRD10 NA 0 NA 1.158 1 NA NA NA NA NA LTS-003 chr13 111567278 111766981 199704 * ANKRD10 0.448 1 NA 1.24389853351939 13 0.473650079104709 3 3 0 -5.76856374458252 LTS-003 chr13 111766982 114098805 2331824 * c(MCF2L-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, F7, F10, ATP11A, MCF2L, LAMP1, ATP11AUN, PCID2, SOX1, GRTP1, CUL4A, PROZ, ARHGEF7) 0.411275875949254 28 0.045882988974659 1.19214655888047 1740 0.317553861342964 2 1 1 -7.46902393240581 LTS-003 chr13 114098806 114623780 524975 * c(LINC00552, GAS6-AS2, ADPRHL1, GAS6, TMEM255B, ATP4B, TMCO3, DCUN1D2, GRK1, GAS6-AS1, TFDP1) 0.400601286890492 19 0.035616541265203 1.54392569940289 521 0.460032614656894 5 3 2 -6.89558527503697 LTS-003 chr13 114623781 114776576 152796 * c(LINC00565, RASA3) 0.444356740550103 3 0.0407308237088326 1.1391350565172 77 0.228359863532818 2 1 1 -6.82009144863993 LTS-003 chr13 114776577 115092817 316241 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 0.987850732505075 297 0.224853336037678 2 NA NA -5.7674437276225 LTS-003 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.473 1 NA 1.0004364138253 5 0.650033306838965 2 2 0 -5.76625023631094 LTS-003 chr14 20201562 21215882 1014321 * c(SNORD126, PARP2, EDDM3A, RNASE11, OR4K14, OR4L1, OR11H6, KLHL33, ANG, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR4Q3, OR4M1, PNP, RNASE12, OSGEP, CCNB1IP1, RNASE4, TEP1, OR4K5, OR4K1, OR4K15, RPPH1, TMEM55B, TTC5) 0.451890583126143 70 0.0682253921995817 1.01629417884863 1592 1.12792751567819 2 1 1 -6.77405700607276 LTS-003 chr14 21215883 21215923 41 * EDDM3A 0.436 1 NA 2.171 1 NA NA NA NA NA LTS-003 chr14 21215924 21216251 328 * EDDM3A 0 1 NA 1.54597397363778 7 2.26843629800249 4 4 0 -5.76441075934187 LTS-003 chr14 21216252 21503959 287708 * c(EDDM3A, TPPP2, SLC39A2, RNASE13, NDRG2, RNASE1, RNASE2, RNASE3, RNASE6, EDDM3B, ECRP, METTL17) 0.353753842026505 19 0.0386049113622418 1.34947707410075 411 0.372302760052516 3 2 1 -6.73356013632588 LTS-003 chr14 21503960 21542766 38807 * c(RNASE8, ARHGEF40, NDRG2, RNASE7) 0.388 1 NA 1.30699826955318 85 0.290224209184276 3 3 0 -5.76482484738745 LTS-003 chr14 21542767 21624270 81504 * c(OR5AU1, ZNF219, ARHGEF40, TMEM253) 0.375634269367046 6 0.024975321152423 1.28883864583928 277 0.29913615259783 3 2 1 -7.20325409149522 LTS-003 chr14 21624271 21677385 53115 * c(LINC00641, HNRNPC) NA 0 NA 1.029 1 NA NA NA NA NA LTS-003 chr14 21677386 22509019 831634 * c(SUPT16H, OR10G3, OR10G2, OR4E2, HNRNPC, SNORD8, METTL3, RPGRIP1, CHD8, SALL2, SNORD9, RAB2B, TOX4) 0.447242198327255 39 0.0420689781237656 0.967865611522579 1424 0.227685183688201 2 1 1 -6.78963165325727 LTS-003 chr14 22509020 22509081 62 * character(0) NA 0 NA 1.486 1 NA NA NA NA NA LTS-003 chr14 22509082 22990996 481915 * character(0) 0.453818553103557 19 0.0309594150480425 1.19605180483779 597 0.275985955688997 2 1 1 -7.13963842070206 LTS-003 chr14 22990997 25444088 2453092 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, ADCY4, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, NA NA NA NA NA NA NA NA NA LTS-003 DHRS4-AS1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.453468109851127 148 0.0449175231385849 0.965250060908101 6533 0.229896383480712 2 1 1 -6.84078721696373 LTS-003 NA NA NA NA LTS-003 chr14 26915075 30194896 3279822 * c(MIR4307, LINC00645, MIR548AI, FOXG1, LINC01551, NOVA1, PRKD1) 0.296359932286299 5 0.152440808184685 1.41702623161816 368 0.357543915391493 3 2 1 -6.8409508217817 LTS-003 chr14 30194897 30396421 201525 * PRKD1 NA 0 NA 0.692 1 NA NA NA NA NA LTS-003 chr14 30396422 32068586 1672165 * c(LOC100506071, AP4S1, DTD2, COCH, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, G2E3, PRKD1, MIR624, NUBPL) 0.348980202957568 9 0.0754797618202684 1.21754276680003 1210 0.286670558262792 3 2 1 -6.87772561308652 LTS-003 chr14 32068587 32123148 54562 * NUBPL NA 0 NA 0.952 1 NA NA NA NA NA LTS-003 chr14 32123149 34420256 2297108 * c(EGLN3, ARHGAP5, NPAS3, NUBPL, ARHGAP5-AS1, AKAP6) 0.470155410191129 22 0.0259463732670731 0.976259043417554 969 0.226286866246774 2 1 1 -7.70946729605463 LTS-003 chr14 34420257 34561423 141167 * EGLN3 NA 0 NA 1.077 1 NA NA NA NA NA LTS-003 chr14 34561424 35344107 782684 * c(CFL2, BAZ1A, SPTSSA, EAPP, SNX6) 0.369724921096285 6 0.0489424832498992 1.20758544780242 463 0.352757567400815 3 2 1 -6.85698097004101 LTS-003 chr14 35344108 35344328 221 * BAZ1A NA 0 NA 1.529 1 NA NA NA NA NA LTS-003 chr14 35344329 36011046 666718 * c(BAZ1A, RALGAPA1, IGBP1P1, FAM177A1, NFKBIA, PPP2R3C, PSMA6, SRP54, INSM2, KIAA0391) 0.438118637105279 7 0.0401597998477274 1.48637923497592 490 0.398173872745131 4 2 2 -6.8081735386351 LTS-003 chr14 36011047 36011088 42 * RALGAPA1 NA 0 NA 1.209 1 NA NA NA NA NA LTS-003 chr14 36011089 38311774 2300686 * c(SLC25A21-AS1, MIR4503, PTCSC3, LINC00609, MIPOL1, RALGAPA1, SFTA3, NKX2-8, FOXA1, PAX9, MBIP, NKX2-1, BRMS1L, SLC25A21) 0.368980692107963 16 0.0504931926104896 1.29694837911461 1221 0.388582218908726 3 2 1 -6.81466328832833 LTS-003 chr14 38311775 38678238 366464 * SSTR1 NA 0 NA 0.62 1 NA NA NA NA NA LTS-003 chr14 38678239 53417352 14739114 * c(SNORD127, LOC100288846, MIR548Y, LINC00871, LINC00648, NA, FRMD6-AS2, SEC23A, FERMT2, MAP4K5, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, RPL10L, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, MDGA2, LINC01599, NID2, FKBP3, FAM179B, KLHDC2, FBXO33, ATP5S, LINC00639, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, MGAT2, MIA2, ATL1, NIN, C14orf166, PNN, POLE2, GNG2, KLHL28, PRPF39, DNAAF2, MIS18BP1, PSMC6, PTGDR, NA NA NA NA NA NA NA NA NA LTS-003 PTGER2, TXNDC16, FANCM, PYGL, SAV1, RPL36AL, RPS29, GNPNAT1, SOS2, SSTR1, STYX, VCPKMT, L2HGDH, TMX1, FSCB, GEMIN2, CDKL1, NEMF) 0.431404315175102 101 0.0966472057342457 0.930569505982849 5728 0.303144952144682 2 1 1 -6.82638669834657 LTS-003 NA NA NA NA LTS-003 chr14 53417353 53510701 93349 * c(FERMT2, DDHD1) NA 0 NA 1.094 1 NA NA NA NA NA LTS-003 chr14 53510702 53619786 109085 * DDHD1 NA 0 NA 1.30093819620645 134 0.452051500043419 3 NA NA -5.76501284563008 LTS-003 chr14 53619787 55434137 1814351 * c(MIR4308, MIR5580, CNIH1, CDKN3, CGRRF1, WDHD1, SAMD4A, GCH1, GMFB, BMP4, DDHD1) 0.464764047085675 13 0.032300273873571 0.923666662179938 726 0.204115958066532 2 1 1 -7.2622788188561 LTS-003 chr14 55434138 55448251 14114 * WDHD1 NA 0 NA 1.075 1 NA NA NA NA NA LTS-003 chr14 55448252 56129909 681658 * c(KTN1-AS1, WDHD1, SOCS4, ATG14, TBPL2, KTN1, LGALS3, FBXO34, MAPK1IP1L, DLGAP5) 0.453126365209663 19 0.0446273065647936 1.02852378077475 856 0.199087294721561 2 1 1 -6.88604004893422 LTS-003 chr14 56129910 56130635 726 * KTN1 NA 0 NA 0.823 1 NA NA NA NA NA LTS-003 chr14 56130636 63759190 7628555 * c(OTX2-AS1, HIF1A-AS2, EXOC5, L3HYPDH, NAA30, SLC38A6, C14orf37, TMEM30B, DAAM1, TIMM9, KCNH5, HIF1A, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, TOMM20L, KTN1, FLJ22447, MNAT1, SIX6, OTX2, DACT1, JKAMP, DHRS7, SIX4, TMEM260, PPM1A, C14orf105, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, RHOJ, TRMT5, ARID4A, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, SNAPC1, CCDC175, SYT16, KIAA0586) 0.403880146642426 91 0.0728849311367802 0.800018077722689 4456 0.230413321688601 2 1 1 -8.84979392542907 LTS-003 chr14 63759191 63759437 247 * RHOJ 0 1 NA 0.905825004313081 5 0.458103372613649 2 2 0 -5.76441252086192 LTS-003 chr14 63759438 64586224 826787 * c(WDR89, GPHB5, SYNE2, PPP2R5E, RHOJ, SGPP1) 0.169571400928995 4 0.198 0.769502522944952 728 0.229649576172991 2 2 0 -7.26914714642537 LTS-003 chr14 64586225 64990572 404348 * c(ESR2, ZBTB1, SYNE2, TEX21P, MTHFD1, ZBTB25, AKAP5) 0.23474486998743 20 0.0441326946474165 1.14754870443057 807 0.311996397108637 4 3 1 -7.5792337985146 LTS-003 chr14 64990573 64998544 7972 * ZBTB1 NA 0 NA 0.73 1 NA NA NA NA NA LTS-003 chr14 64998545 65053522 54978 * c(PPP1R36, ZBTB1, HSPA2) 0 1 NA 0.754171179148836 141 0.30286720049347 2 2 0 -5.7853057391211 LTS-003 chr14 65053523 65068221 14699 * PPP1R36 0.438 1 NA 0.774293633484301 35 0.144750890042401 2 2 0 -5.78382845267811 LTS-003 chr14 65068222 66028206 959985 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, FNTB, FUT8, PLEKHG3, GPX2, RAB15, MAX, FUT8-AS1, SPTB, CHURC1) 0.407232758915165 21 0.0652293025009612 0.794649380211354 887 0.174373440676946 2 1 1 -7.4461457449589 LTS-003 chr14 66028207 66028329 123 * FUT8 NA 0 NA 1.147 1 NA NA NA NA NA LTS-003 chr14 66028330 66210584 182255 * FUT8 NA 0 NA 1.14648146810715 80 0.235889665261569 3 NA NA -5.8205231874427 LTS-003 chr14 66210585 72818888 6608304 * c(MED6, LOC100289511, SYNJ2BP-COX16, GPHN, VTI1B, RDH12, ADAM21P1, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, PCNX1, ZFYVE26, TTC9, FUT8, SIPA1L1, PLEK2, ADAM20P1, SNORD56B, ARG2, PLEKHD1, MAP3K9, LINC00238, RDH11, COX16, ATP6V1D, PIGH, EXD2, SYNJ2BP, SLC39A9, CCDC177, GALNT16, PLEKHH1, RAD51B, SMOC1, SRSF5, MPP5, SLC8A3, SLC10A1, ZFP36L1, ACTN1, ADAM21, ADAM20, DCAF5, RGS6, SUSD6) 0.389608353042694 66 0.0746903101094273 0.804107368520114 4242 0.209700668740709 2 1 1 -8.93725339880477 LTS-003 chr14 72818889 73220153 401265 * c(DPF3, RGS6) 0.342 1 NA 0.614509811392558 289 0.1613843019807 1 1 0 -5.83816446323222 LTS-003 chr14 73220154 73404680 184527 * c(DCAF4, DPF3) 0.263 1 NA 0.528311847756173 27 0.170773579293213 1 1 0 -5.77862479862965 LTS-003 chr14 73404681 78325671 4920991 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, ACOT2, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, DCAF4, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, HEATR4, LTBP2, ALDH6A1, COQ6, FCF1, PGF, ZFYVE1, VRTN, FLVCR2, GPATCH2L, YLPM1, PSEN1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, RBM25, VIPAS39, NA NA NA NA NA NA NA NA NA LTS-003 ACOT1, ACOT6, IRF2BPL, SYNDIG1L, TGFB3, LINC01220, ZC2HC1C, BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, NUMB, ALKBH1, EIF2B2, PAPLN, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.230656871025677 176 0.0643668937652503 0.618726387105696 7407 0.165081597958196 1 1 0 -8.50946119572576 LTS-003 NA NA NA NA LTS-003 chr14 78325672 78353353 27682 * ADCK1 NA 0 NA 0.788 1 NA NA NA NA NA LTS-003 chr14 78353354 87388641 9035288 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, LOC283585, GTF2A1, ADCK1, SEL1L, SNORA79, TSHR, STON2, NRXN3) 0.222927944527102 25 0.0650288397559114 0.684897454723234 1486 0.187786176770853 1 1 0 -10.7958754944047 LTS-003 chr14 87388642 87388691 50 * LOC283585 NA 0 NA 0.968 1 NA NA NA NA NA LTS-003 chr14 87388692 90528943 3140252 * c(PTPN21, FOXN3, TTC8, EML5, GALC, LOC283585, LINC01146, FOXN3-AS2, FOXN3-AS1, KCNK10, TDP1, SPATA7, KCNK13, ZC3H14, GPR65, EFCAB11) 0.146209015248686 39 0.0310984679663091 0.956074374250523 1614 0.266428484594259 2 2 0 -8.4526695025761 LTS-003 chr14 90528944 90650405 121462 * KCNK13 NA 0 NA 0.738 1 NA NA NA NA NA LTS-003 chr14 90650406 93407771 2757366 * c(SNORA11B, FBLN5, CHGA, TC2N, SLC24A4, TTC7B, ITPK1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, LGMN, KCNK13, PSMC1, CATSPERB, RIN3, C14orf159, CALM1, GPR68, RPS6KA5, TRIP11, GOLGA5) 0.229595801344354 65 0.0469816760515776 0.605218206256484 2769 0.167352412859352 1 1 0 -8.53527025476718 LTS-003 chr14 93407772 93408320 549 * ITPK1 NA 0 NA 0.633108197611751 9 0.134415194246947 1 NA NA -5.76467083560197 LTS-003 chr14 93408321 93412635 4315 * ITPK1 NA 0 NA 1.057 1 NA NA NA NA NA LTS-003 chr14 93412636 93706555 293920 * c(TMEM251, ITPK1-AS1, ITPK1, UBR7, BTBD7, MOAP1, GON7) 0.177 1 NA 0.84895626057935 321 0.220468823425907 2 2 0 -5.81887929509906 LTS-003 chr14 93706556 102771356 9064801 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, CYP46A1, PAPOLA, SERPINA3, AK7, IFI27L1, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, EML1, DICER1, LINC00521, SERPINA11, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CCDC85C, SERPINA9, HSP90AA1, COX8C, IFI27, SERPINA13P, NA NA NA NA NA NA NA NA NA LTS-003 LINC01550, RTL1, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, ASB2, SERPINA1, SERPINA4, ATG2B, PPP2R5C, MEG3, BTBD7, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, MIR656, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, CLMN, TCL1A, IFI27L2, SETD3, HHIPL1, SERPINA6, DLK1, CCNK, FAM181A, WDR20, TCL1B) 0.154861142906738 102 0.0490623169992024 0.87141360117053 7244 0.234802982979729 2 2 0 -8.5615184258526 LTS-003 NA NA NA NA LTS-003 chr14 102771357 103059679 288323 * c(MIR4309, ANKRD9, RCOR1, CINP, ZNF839, MOK, TECPR2) NA 0 NA 0.755786853504716 379 0.159913033779278 2 NA NA -6.12884827712768 LTS-003 chr14 103059680 103148188 88509 * RCOR1 NA 0 NA 1.467 1 NA NA NA NA NA LTS-003 chr14 103148189 106452715 3304527 * c(ZBTB42, LINC00605, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, EIF5, ELK2AP, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, TMEM121, AMN, APOPT1, ADAM6, BTBD6, MTA1, EXOC3L4, NA NA NA NA NA NA NA NA NA LTS-003 BAG5, C14orf2, CDC42BPB, FAM30A) 0.162637502061732 143 0.0630463075484906 0.865716107138171 5319 0.24480761904977 2 2 0 -7.86210886476874 LTS-003 NA NA NA NA LTS-003 chr14 106452716 106452766 51 * character(0) 0.219 1 NA 0.429 1 NA NA NA NA NA LTS-003 chr14 106452767 106757904 305138 * LINC00226 0.195022640207896 10 0.0423682270890188 0.607540875474123 118 0.261315301647783 1 1 0 -7.47834396747627 LTS-003 chr14 106757905 106758041 137 * character(0) NA 0 NA 0.906 1 NA NA NA NA NA LTS-003 chr14 106758042 106829915 71874 * character(0) 0.190642003721583 10 0.0953557083299742 1.68744633228621 40 0.643792337915709 6 5 1 -6.75130495670625 LTS-003 chr14 106829916 107013129 183214 * LINC00221 0.140852403765759 12 0.0407795254627821 0.973148381558559 88 0.340542854287182 1 1 0 -7.01374939109269 LTS-003 chr14 107013130 107034920 21791 * character(0) 0.374 1 NA 1.19020437273215 14 0.342867265189405 3 3 0 -5.76635735119449 LTS-003 chr14 107034921 107114193 79273 * character(0) 0.336632956953286 9 0.0901346215391178 1.14608838200366 39 0.340849124255986 3 2 1 -6.76378578478669 LTS-003 chr14 107114194 107131137 16944 * character(0) NA 0 NA 0.223 1 NA NA NA NA NA LTS-003 chr14 107131138 107283157 152020 * character(0) 0.20250132219291 5 0.0292095874671314 0.706948986290516 68 0.390615311188008 5 4 1 -7.67231750055802 LTS-003 chr15 20169987 20446043 276057 * character(0) 0.473 1 NA 0.953131426321801 23 0.218542657805364 2 2 0 -5.76459699329142 LTS-003 chr15 20446044 22369225 1923182 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.306686855118686 35 0.131402422499189 1.07396245613239 195 0.555022077848518 3 2 1 -7.00584678236144 LTS-003 chr15 22369226 22369290 65 * c(OR4M2, LOC727924) 0.452 1 NA 2.26 1 NA NA NA NA NA LTS-003 chr15 22369291 22382897 13607 * c(OR4N4, OR4M2, LOC727924) 0.409787299060222 4 0.0560059520646392 1.67127893495975 23 1.03928890633454 12 7 5 -6.74235587095368 LTS-003 chr15 22382898 22383189 292 * c(OR4N4, LOC727924) 0.083 1 NA 3.36505317000722 3 0.312546529869287 8 8 0 -5.76441016624093 LTS-003 chr15 22383190 22413880 30691 * c(OR4N4, OR4N3P, LOC727924) 0.067 1 NA 2.37805529283859 13 1.14922680250234 6 6 0 -5.76448117382015 LTS-003 chr15 22413881 22413895 15 * OR4N3P NA 0 NA 1.019 1 NA NA NA NA NA LTS-003 chr15 22413896 22833673 419778 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, OR4N3P, REREP3) 0.306684246428572 6 0.13855492292469 0.784633180783238 68 0.336528140607207 2 1 1 -7.29269178868647 LTS-003 chr15 22833674 22835934 2261 * TUBGCP5 NA 0 NA 2.171 1 NA NA NA NA NA LTS-003 chr15 22835935 23687743 851809 * c(HERC2P7, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S, NIPA2) 0.154620796971214 15 0.111050739154076 1.36514924980851 656 0.861762887928946 2 2 0 -7.04381329760702 LTS-003 chr15 23687744 23688912 1169 * character(0) NA 0 NA 0.681 1 NA NA NA NA NA LTS-003 chr15 23688913 23932461 243549 * c(MIR4508, NDN, MAGEL2, MKRN3) 0.165 1 NA 0.969196565456458 206 0.242375348219615 2 2 0 -5.76462871278586 LTS-003 chr15 24920497 28491201 3570705 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-003 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, MIR4715, PWAR1, NPAP1, GABRA5, GABRB3, GABRG3, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, OCA2, LINC00929, ATP10A, SNRPN, SNORD116-19, UBE3A, PWAR5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 HERC2, SNURF) 0.229097788899656 28 0.0549008726716235 0.661730824079122 1592 0.167593531975539 1 1 0 -9.44148639681449 LTS-003 NA NA NA NA LTS-003 chr15 28491202 28491843 642 * HERC2 NA 0 NA 0.568 1 NA NA NA NA NA LTS-003 chr15 28491844 45567858 17076015 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, LOC100289656, MIR1282, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, MIR4510, TMCO5B, LOC100996255, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CHRNA7, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, TERB2, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, NA NA NA NA NA NA NA NA NA LTS-003 PATL2, EPB42, BAHD1, FAN1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, FAM189A1, CCNDBP1, LPCAT4, PLA2G4F, LRRC57, NUTM1, HYPK, GANC, TMEM87A, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283710, FAM98B, PLA2G4D, PDIA3, EHD4, APBA2, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, DUOXA2, LTK, MIR211, MAP1A, MEIS2, MFAP1, TRPM1, HERC2P9, WHAMMP2, GOLGA8B, EIF2AK4, CATSPER2P1, DUOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 NDUFAF1, NUSAP1, EMC4, SPTBN5, CTDSPL2, KLF13, PLCB2, DUOX1, DLL4, INO80, CKMT1A, PPP1R14D, MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, NSMCE3, B2M, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, RAD51, SERINC4, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, EIF3J-AS1, PDCD6IPP2, GOLGA8T, SORD, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, GOLGA8O, GOLGA6L7P, PIN4P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 OIP5-AS1, TYRO3, CHAC1, KATNBL1, WDR76, TMEM62, SPG11, ELL3, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, HERC2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, SHF, DUOXA1, SLC28A2, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.233967402846114 266 0.0761393471499679 0.617514209913252 16876 0.175149652667458 1 1 0 -9.53106542901115 LTS-003 NA NA NA NA LTS-003 chr15 45567859 45653300 85442 * SLC28A2 NA 0 NA 1.292 1 NA NA NA NA NA LTS-003 chr15 45653301 45954348 301048 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, SQRDL, SLC30A4, SPATA5L1, C15orf48) 0.135427520399365 9 0.0793837374893484 1.12972984484451 472 0.346225817766349 2 2 0 -7.00507668248343 LTS-003 chr15 45954349 45962026 7678 * SQRDL NA 0 NA 0.618 1 NA NA NA NA NA LTS-003 chr15 45962027 50366295 4404269 * c(NDUFAF4P1, MIR4716, DUT, FAM227B, FBN1, FGF7, CEP152, EID1, GALK2, SLC24A5, SHC4, CTXN2, MYEF2, DTWD1, SQRDL, SLC12A1, ATP8B4, SEMA6D, COPS2, SECISBP2L) 0.234076132438595 21 0.0517516505372856 0.623036676090321 2601 0.161508070925093 1 1 0 -9.04912817516301 LTS-003 chr15 50366296 51018700 652405 * c(GABPB1-AS1, MIR4712, SLC27A2, GABPB1, HDC, USP50, TRPM7, FLJ10038, ATP8B4, SPPL2A, USP8) 0.128619073076685 14 0.0494317711598522 0.891444135185399 753 0.270791186962407 2 2 0 -7.19569596489006 LTS-003 chr15 51018701 51023057 4357 * SPPL2A NA 0 NA 0.526 1 NA NA NA NA NA LTS-003 chr15 51023058 62538831 11515774 * c(LOC100129973, DCAF13P3, BCL2L10, MIR1266, MIR2116, DYX1C1-CCPG1, MIR4713, MYZAP, ADAM10, GNB5, ARPP19, LEO1, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DMXL2, AP4E1, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, ONECUT1, GLDN, AQP9, TEX9, TNFAIP8L3, C2CD4B, LIPC, UNC13C, MYO1E, MYO5A, NEDD4, RSL24D1, FAM63B, RNF111, ZNF280D, VPS13C, MNS1, MYO5C, NA NA NA NA NA NA NA NA NA LTS-003 MAPK6, FAM214A, RAB27A, RORA, RFX7, BNIP2, HSP90AB4P, MIR628, TCF12, ICE2, SLTM, POLR2M, SPPL2A, CGNL1, ALDH1A2, CCNB2, CCPG1, GCNT3, LDHAL6B, PIGB) 0.236188363399177 148 0.0692679394466899 0.617356252574287 7848 0.193051534018597 1 1 0 -8.93834471504297 LTS-003 NA NA NA NA LTS-003 chr15 62538832 62539219 388 * character(0) NA 0 NA 0.982 1 NA NA NA NA NA LTS-003 chr15 62539220 64231509 1692290 * c(USP3-AS1, LACTB, MGC15885, DAPK2, FBXL22, MIR190A, RPS27L, RAB8B, TPM1, CA12, APH1B, TLN2, HERC1, USP3) 0.139598910127788 26 0.0312024653858288 0.94101627121986 1810 0.224004017356868 2 2 0 -8.17251498447522 LTS-003 chr15 64231510 68466212 4234703 * c(MIR1272, MIR4311, IQCH-AS1, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, DIS3L, MTFMT, SLC51B, C15orf61, LCTL, ZNF609, DAPK2, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, SKOR1, SMAD3, SMAD6, OAZ2, RASL12, SPG21, HACD3, CSNK1G1, PPIB, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SNX1, SCARNA14, AAGAB, SNX22, PIF1, PLEKHO2, VWA9, FAM96A, MEGF11, CILP, PIAS1, NA NA NA NA NA NA NA NA NA LTS-003 RAB11A, SLC24A1, TRIP4, IGDCC3, KIAA0101) 0.232646516131818 98 0.0572086513711912 0.602717288875774 4668 0.160042393252762 1 1 0 -8.33667269892923 LTS-003 NA NA NA NA LTS-003 chr15 68466213 68467995 1783 * PIAS1 NA 0 NA 0.676 1 NA NA NA NA NA LTS-003 chr15 68467996 94886122 26418127 * c(NR2E3, DNM1P35, NA, UBE2Q2P2, LINC00930, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR548H4, MIR4312, MIR3175, MIR4313, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, FEM1B, AP3S2, HMG20A, CORO2B, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, CHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, NA NA NA NA NA NA NA NA NA LTS-003 C15orf40, SENP8, HIGD2B, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, CSK, DRAIC, C15orf32, HAPLN3, MESP2, NRG4, LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ACAN, SCAMP5, CT62, GRAMD2, ETFA, FAH, FES, ITGA11, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, GABARAPL3, SPESP1, LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, VPS33B, MRPL46, NPTN, SLCO3A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ZNF774, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, ZNF710, HDDC3, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, GDPGP1, ADAMTS7P1, ST20, FAM174B, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2A2, MAN2C1, LINC00593, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 LOC440300, TTLL13P, MYO9A, NEO1, NMB, NTRK3, SCAPER, FURIN, HDGFRP3, NGRN, RHCG, PDE8A, PKM, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZSCAN2, DET1, UACA, FANCI, IMP3, LARP6, DNAJA4, MCTP2, GOLGA6B, MESP1, UNC45A, PSMA4, C15orf39, THAP10, RGMA, WDR93, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 BCL2A1, RLBP1, PPCDC, CELF6, RPLP1, BLM, STRA6, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, ISL2, EFTUD1P1, MRPS11, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, TLE3, AGBL1-AS1, ASB9P1, LOC729739, ANKRD34C-AS1, TYRO3P, NOX5, EFL1, NEIL1, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 AP3B2, ANP32A, ST8SIA2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PIAS1, PEX11A, IQGAP1, TICRR, PSTPIP1, PRC1, RCCD1, LOC91450, SLC28A1, CALML4, UBE2Q2, COX5A, STOML1, HOMER2, KIF23, ZNF592, SV2B, ARNT2) 0.218631828645271 448 0.0603409959661211 0.629015068961579 21249 0.251490844281856 1 1 0 -9.69218566395643 LTS-003 NA NA NA NA LTS-003 chr15 94886123 94886333 211 * MCTP2 NA 0 NA 1.315 1 NA NA NA NA NA LTS-003 chr15 94886334 100996228 6109895 * c(MIR1469, MIR4714, SPATA8-AS1, LRRC28, LYSMD4, PGPEP1L, LINC00924, SPATA8, ADAMTS17, DNM1P46, CERS3, SYNM, FAM169B, IGF1R, SPATA41, LINC01197, MEF2A, LOC440311, MCTP2, NR2F2-AS1, TTC23, NR2F2, HSP90B2P, ARRDC4, LINC00923) 0.199590567268241 78 0.0669802432091209 0.679238025286317 1920 0.482843315035036 1 1 0 -7.62285535205418 LTS-003 chr15 100996229 102516492 1520264 * c(FAM138E, LOC100507472, TARSL2, ASB7, CERS3, ALDH1A3, CHSY1, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PRKXP1, PCSK6, LINS1, SELENOS, SNRPA1, LRRK1, TM2D3) 0.241307565542351 55 0.0595364076711372 0.603221057729573 1401 0.183779797728769 1 1 0 -8.12282478374923 LTS-003 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.195 1 NA NA NA NA NA LTS-003 chr16 81704 81779 76 * character(0) 0.376 1 NA 0.943 1 NA NA NA NA NA LTS-003 chr16 81780 1272865 1191086 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSG1, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, NA NA NA NA NA NA NA NA NA LTS-003 RGS11, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.443516477049421 158 0.0562081413676937 0.914365496742963 3652 0.302030168980212 2 1 1 -6.76765607550457 LTS-003 NA NA NA NA LTS-003 chr16 1272866 1278424 5559 * c(TPSG1, TPSB2) 0.261 1 NA 0.908644954434936 21 0.181612316028769 2 2 0 -5.76471751255964 LTS-003 chr16 1278425 1292147 13723 * c(TPSB2, TPSAB1) 0.256400028394801 15 0.0555973620477327 0.97738931120774 53 0.360174346993537 4 3 1 -6.80931158754897 LTS-003 chr16 1292148 1292254 107 * TPSAB1 0.393 1 NA 1.23979674157571 5 0.353707789001034 3 3 0 -5.76441439260134 LTS-003 chr16 1292255 1688028 395774 * c(TSR3, CLCN7, TPSD1, C16orf91, PTX4, CRAMP1, CCDC154, UNKL, TPSAB1, UBE2I, TMEM204, GNPTG, BAIAP3, IFT140, TELO2) 0.432952301992921 68 0.0662001779795968 0.913640859454721 1307 0.224054696662034 2 1 1 -6.74493094244237 LTS-003 chr16 1688029 1691120 3092 * CRAMP1 NA 0 NA 1.196 1 NA NA NA NA NA LTS-003 chr16 1691121 1859850 168730 * c(MIR3177, NUBP2, EME2, MAPK8IP3, HAGH, IGFALS, NME3, CRAMP1, MRPS34, HN1L, SPSB3) 0.402263353422146 28 0.0407074996665299 1.22196398536032 766 0.320133500465737 5 3 2 -7.03548731268486 LTS-003 chr16 1859851 1877494 17644 * c(HAGH, FAHD1) 0.298 1 NA 1.28209687839606 48 0.241908193380924 3 3 0 -5.76501798196819 LTS-003 chr16 1877495 2201270 323776 * c(MIR1225, MIR3180-5, MIR4516, TBL3, NOXO1, RNF151, MEIOB, RAB26, GFER, SNORA64, NPW, NDUFB10, NTHL1, MSRB1, PKD1, SNORA10, RPL3L, RPS2, HS3ST6, LINC00254, SNORA78, TSC2, SNHG9, FAHD1, ZNF598, SYNGR3, SLC9A3R2) 0.315895347462987 45 0.0764238777536778 1.21502399146428 1115 0.293308373803285 3 2 1 -6.89687527708055 LTS-003 chr16 2201271 2218276 17006 * c(RAB26, SNORD60, TRAF7) NA 0 NA 1.19943419521301 56 0.193950880781305 3 NA NA -5.768619324239 LTS-003 chr16 2218277 2229323 11047 * c(CASKIN1, TRAF7) 0.435 1 NA 0.957339278476605 106 0.212014114873657 2 2 0 -5.76441140515168 LTS-003 chr16 2229324 2653223 423900 * c(MIR940, MIR3178, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, BRICD5, PGP, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CASKIN1, MLST8, ABCA17P, CEMP1, C16orf59, CCNF) 0.393479698609954 17 0.0755066709168215 0.931152888600914 1183 0.231707637248501 2 1 1 -6.90816406706707 LTS-003 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.004 1 NA NA NA NA NA LTS-003 chr16 2672647 2747830 75184 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.46319242713796 2 0.0381837661840736 0.607484027186935 78 0.771833774822906 2 1 1 -7.07342980750319 LTS-003 chr16 2747831 2747857 27 * KCTD5 0.431 1 NA 0.926 1 NA NA NA NA NA LTS-003 chr16 2747858 14968958 12221101 * c(MIR365A, LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, LINC00514, LINC00921, TMEM114, NA NA NA NA NA NA NA NA NA LTS-003 DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, PRSS22, NPIPA3, MMP25, C16orf90, TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, LITAF, SEC14L5) 0.445071494990677 188 0.083811281270069 0.940485426302226 8416 0.497214281931082 2 1 1 -6.7555453377083 LTS-003 NA NA NA NA LTS-003 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.235 1 NA NA NA NA NA LTS-003 chr16 15068593 15123936 55344 * PDXDC1 0.414563366062149 2 0.000707106781186548 1.28379240879373 111 0.344861334048252 19 11 8 -8.37259547743623 LTS-003 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.828 1 NA NA NA NA NA LTS-003 chr16 15125636 18995419 3869784 * c(NPIPA5, MIR3179-2, MIR3180-4, NTAN1, FOPNL, PDXDC1, SMG1, ARL6IP1, MPV17L, NOMO2, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, RRN3, NDE1, MIR484, RPS15A, XYLT1, ABCC6P1, TMC7, C16orf45, KIAA0430) 0.447563540405077 45 0.0746042961906418 0.955043305344462 1916 0.230821219559117 2 1 1 -6.75308651999548 LTS-003 chr16 18995420 19020475 25056 * TMC7 NA 0 NA 1.123 1 NA NA NA NA NA LTS-003 chr16 19020476 20113902 1093427 * c(COQ7, IQCK, GPR139, ITPRIPL2, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, TMC5, TMC7, CCP110) 0.385113372652365 17 0.0392411473718446 1.29400084051043 1124 0.331504215236065 3 2 1 -7.13160420372217 LTS-003 chr16 20113903 20320922 207020 * character(0) NA 0 NA 0.811 1 NA NA NA NA NA LTS-003 chr16 20320923 27974487 7653565 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, ACSM2A, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, PDILT, GGA2, NPIPB3, KIAA0556, PDZD9, ANKS4B, TNRC6A, GP2, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ACSM5, ARHGAP17, LOC554206, DNAH3, NA NA NA NA NA NA NA NA NA LTS-003 THUMPD1, POLR3E, PRKCB, UBFD1, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.45014112216044 75 0.0690383755406897 0.925457135121034 6062 0.216072509982554 2 1 1 -6.89469829848266 LTS-003 NA NA NA NA LTS-003 chr16 27974488 28119057 144570 * c(GSG1L, XPO6) NA 0 NA 0.829654511899713 47 0.2137297112107 2 NA NA -5.80466188437957 LTS-003 chr16 28119058 28123078 4021 * XPO6 NA 0 NA 1.261 1 NA NA NA NA NA LTS-003 chr16 28123079 28506872 383794 * c(CLN3, XPO6, SBK1, APOBR) 0.275 1 NA 1.25295228990514 289 0.286098438711269 3 3 0 -5.78279582566993 LTS-003 chr16 28506873 28608392 101520 * c(SGF29, IL27, NUPR1, APOBR, SULT1A2) 0.350946494559564 14 0.0615207014207145 1.23391748013909 214 0.285283524769008 3 2 1 -6.74042889625129 LTS-003 chr16 28608393 28631399 23007 * SULT1A1 0.333487252180237 12 0.0752927619363243 0.779287892398983 57 0.64104084232506 3 2 1 -6.78208221647876 LTS-003 chr16 28631400 28634378 2979 * SULT1A1 NA 0 NA 1.172 1 NA NA NA NA NA LTS-003 chr16 28634379 32013503 3379125 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, NA NA NA NA NA NA NA NA NA LTS-003 ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A1, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.37449907018364 105 0.0624483933460408 1.20180403095124 6734 0.283658942436592 3 2 1 -7.16238024867354 LTS-003 NA NA NA NA LTS-003 chr16 32013504 32486808 473305 * c(LOC390705, NA, TP53TG3D) NA 0 NA 0.681 1 NA NA NA NA NA LTS-003 chr16 32486809 32896703 409895 * c(SLC6A10P, LOC390705) 0.367089532831226 4 0.0569473440996154 0.701266879315302 63 0.2887505270497 2 1 1 -7.74882680846391 LTS-003 chr16 32896704 32936849 40146 * LOC390705 NA 0 NA 1.394 1 NA NA NA NA NA LTS-003 chr16 32936850 33961395 1024546 * c(LOC390705, LINC00273) 0.338631714589713 15 0.1105663773917 1.0130290128916 145 0.327948886161953 2 1 1 -7.16825735590009 LTS-003 chr16 33961396 33961402 7 * LINC00273 0.439 1 NA 0.642 1 NA NA NA NA NA LTS-003 chr16 33961403 33961448 46 * LINC00273 0.319380987980455 4 0.106822282319748 0.748376772677465 4 0.117054118537823 13 9 4 -6.74248103575962 LTS-003 chr16 33961449 33961453 5 * LINC00273 0.331 1 NA 0.36 1 NA NA NA NA NA LTS-003 chr16 33961454 34257013 295560 * LINC00273 0.34086811003974 61 0.0913951189044735 0.540745130116043 105 0.308499891653438 2 1 1 -7.86158892591533 LTS-003 chr16 34257014 34257026 13 * character(0) NA 0 NA 0.894 1 NA NA NA NA NA LTS-003 chr16 34257027 34326439 69413 * character(0) NA 0 NA 0.868173893019841 63 0.218330352578708 2 NA NA -5.77325694909268 LTS-003 chr16 34326440 34489554 163115 * UBE2MP1 NA 0 NA 1.343 1 NA NA NA NA NA LTS-003 chr16 34489555 34682380 192826 * LINC01566 NA 0 NA 1.32487249630122 41 0.433428307290809 3 NA NA -5.76479969392319 LTS-003 chr16 46508169 46694091 185923 * c(ANKRD26P1, VPS35, SHCBP1) NA 0 NA 1.47617497168831 298 0.363712776635765 3 NA NA -5.77021192514926 LTS-003 chr16 46694092 46705576 11485 * VPS35 0.144 1 NA 2.26137492128564 37 0.702572730357108 5 5 0 -5.76444220211625 LTS-003 chr16 46705577 46729508 23932 * c(ORC6, VPS35) NA 0 NA 2.29921428557062 76 0.542030483217358 5 NA NA -5.76461360039601 LTS-003 chr16 46729509 47271958 542450 * c(DNAJA2, ORC6, C16orf87, ITFG1, NETO2, GPT2, MYLK3) 0.2 1 NA 1.72140074321546 488 0.341464514810017 4 4 0 -5.76558477286852 LTS-003 chr16 47271959 47292437 20479 * ITFG1 NA 0 NA 0.728 1 NA NA NA NA NA LTS-003 chr16 47292438 50583561 3291124 * c(LOC100507577, MIR548AE2, ADCY7, C16orf78, ZNF423, CNEP1R1, BRD7, PHKB, HEATR3, PAPD5, SIAH1, ITFG1, LONP2, ABCC11, NKD1, CBLN1, ABCC12, N4BP1) 0.401230016095222 23 0.0459121863316804 0.783664347727101 1530 0.172897218859925 2 1 1 -8.96851648276204 LTS-003 chr16 50583562 50640650 57089 * NKD1 NA 0 NA 0.864 1 NA NA NA NA NA LTS-003 chr16 50640651 53341916 2701266 * c(LINC00919, SNX20, CYLD, TOX3, C16orf97, SALL1, NOD2, CASC16, CHD9, NKD1) 0.423440385988221 15 0.121973338226414 0.930492342848944 930 0.217307236371051 2 1 1 -6.77141619478426 LTS-003 chr16 53341917 53342563 647 * CHD9 NA 0 NA 0.677 1 NA NA NA NA NA LTS-003 chr16 53342564 66514785 13172222 * c(CDH5, MIR3935, LINC00920, CDH8, CDH11, IRX5, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, BEAN1, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, ARL2BP, DKFZP434H168, AMFR, GNAO1, GOT2, LOC283856, LINC00922, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, NA NA NA NA NA NA NA NA NA LTS-003 SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, CCL17, CCL22, CX3CL1, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, TK2, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, CHD9, NLRC5, DRC7, CAPNS2, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.383587732881517 161 0.100310070523588 0.80222708015735 6208 0.212931246959401 2 1 1 -10.0523380426557 LTS-003 NA NA NA NA LTS-003 chr16 66514786 66516724 1939 * c(BEAN1, TK2) NA 0 NA 0.553 1 NA NA NA NA NA LTS-003 chr16 66516725 66887807 371083 * c(CKLF-CMTM1, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, TERB1, CKLF, TK2, CA7, NAE1) 0.382901421824132 6 0.0610857321038773 0.740104225044928 694 0.164676771203258 2 1 1 -7.64109553399035 LTS-003 chr16 66887808 66957875 70068 * c(CDH16, PDP2, RRAD, CA7) 0.475113394882441 4 0.0135030860670194 1.01165198205874 197 0.191625868909026 2 1 1 -9.85096175247039 LTS-003 chr16 66957876 66958654 779 * RRAD NA 0 NA 0.715 1 NA NA NA NA NA LTS-003 chr16 66958655 70606555 3647901 * c(CDH3, SNORD111B, MIR1538, MIR1972-1, SMG1P7, LOC100506083, NUTF2, CTCF, NFAT5, WWP2, DDX19B, EXOSC6, NRN1L, ZFP90, CARMIL2, KCTD19, TMED6, CTRL, AARS, NQO1, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, NIP7, FAM96B, TPPP3, NA NA NA NA NA NA NA NA NA LTS-003 PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.381104082825453 64 0.0758536848018333 0.791401247715487 6949 1.24412922830213 2 1 1 -7.06717928240889 LTS-003 NA NA NA NA LTS-003 chr16 70606556 70680609 74054 * c(IL34, SF3B3) NA 0 NA 0.813738778131213 46 0.123435171429758 2 NA NA -5.84319717172472 LTS-003 chr16 70680610 70699050 18441 * c(IL34, MTSS1L) NA 0 NA 1.15727820939262 67 0.24742873650249 3 NA NA -5.76905599636967 LTS-003 chr16 70699051 70699362 312 * MTSS1L NA 0 NA 0.877 1 NA NA NA NA NA LTS-003 chr16 70699363 70884524 185162 * c(VAC14-AS1, HYDIN, VAC14, MTSS1L) 0.493 1 NA 0.811742212917794 253 0.202954271499072 2 2 0 -5.83950548657678 LTS-003 chr16 70884525 71163579 279055 * HYDIN 0.464501392967519 73 0.031267381771768 0.90967062824269 477 0.240779286153728 2 1 1 -7.25372878543779 LTS-003 chr16 71163580 71163606 27 * HYDIN 0.257 1 NA 1.569 1 NA NA NA NA NA LTS-003 chr16 71163607 71601023 437417 * c(CHST4, HYDIN, CMTR2, TAT, ZNF19, ZNF23, CALB2) 0.39801512990762 19 0.0805724765450845 0.841187939104803 490 0.238653796555614 2 1 1 -6.93207500674969 LTS-003 chr16 71601024 71601352 329 * TAT NA 0 NA 0.716 1 NA NA NA NA NA LTS-003 chr16 71601353 84651523 13050171 * c(LOC100129617, SYCE1L, SNORA70D, MIR3182, LINC01568, MIR4720, MIR4719, CDH13, CLEC3A, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, SLC38A8, CTRB1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, OSGIN1, HP, HPR, HSBP1, HSD17B2, ATXN1L, PKD1L3, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, NA NA NA NA NA NA NA NA NA LTS-003 WWOX, PLCG2, BCO1, TERF2IP, NECAB2, TXNL4B, RFWD3, ZNF821, CENPN, CMC2, PSMD7, VAT1L, TLDC1, WFDC1, TAT, SNORD71, FA2H, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, ZNRF1, CNTNAP4, MBTPS1, TAF1C, MARVELD3, KCNG4, SDR42E1, BCAR1, DHX38, IST1, ATP2C2) 0.388807709817432 149 0.0721871999559136 0.794782248527585 6567 0.202127976413462 2 1 1 -10.5285532135692 LTS-003 NA NA NA NA LTS-003 chr16 84651524 84696052 44529 * c(COTL1, KLHL36) 0.342845360548623 3 0.0193476958145753 1.06847757612754 57 0.211518433284307 3 2 1 -6.91812527051955 LTS-003 chr16 84696053 84696102 50 * character(0) 0.316 1 NA 0.917598236774029 3 0.0986576572463249 2 2 0 -5.76441634229424 LTS-003 chr16 84696103 87457526 2761424 * c(MIR1910, C16orf95, MIR5093, EMC8, COX4I1, FLJ30679, LOC146513, LINC00311, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, FAM92B, IRF8, LOC400548, FENDRR, C16orf74, GINS2, ZDHHC7, MTHFSD, LINC00917, FBXO31, MAP1LC3B, CRISPLD2, USP10, KIAA0513) 0.283349179284146 77 0.0489529954357504 1.08997407354009 1571 0.287353444185528 3 2 1 -8.58811495887259 LTS-003 chr16 87457527 87525634 68108 * ZCCHC14 NA 0 NA 1.07443889531689 23 0.351254718787315 2 NA NA -5.76859610396928 LTS-003 chr16 87525635 87636470 110836 * JPH3 NA 0 NA 0.622 1 NA NA NA NA NA LTS-003 chr16 87636471 87723838 87368 * JPH3 0.433 1 NA 0.704075448735051 57 0.148917865623149 1 1 0 -5.88270983970295 LTS-003 chr16 87723839 88038028 314190 * c(KLHDC4, BANP, JPH3, CA5A, SLC7A5) 0.383211500342784 21 0.0981315443677516 0.757465785070385 366 0.61555844995806 2 1 1 -6.91942903595529 LTS-003 chr16 88038029 88039715 1687 * BANP NA 0 NA 1.075 1 NA NA NA NA NA LTS-003 chr16 88039716 88729196 689481 * c(MIR5189, ZC3H18, CYBA, ZFPM1, IL17C, MVD, BANP, ZNF469) 0.466286832311769 19 0.0240143719151581 0.88391317764515 710 0.207913939335886 2 1 1 -7.70733690226967 LTS-003 chr16 88729197 88729409 213 * MVD NA 0 NA 0.78 1 NA NA NA NA NA LTS-003 chr16 88729410 89119274 389865 * c(MIR4722, RNF166, SNAI3-AS1, GALNS, SNAI3, CTU2, APRT, PABPN1L, MVD, TRAPPC2L, CDT1, CBFA2T3, PIEZO1) 0.404125961934747 49 0.0533597325182742 0.743119224986525 926 0.190126116658995 2 1 1 -7.31674199202446 LTS-003 chr16 89119275 89166983 47709 * ACSF3 NA 0 NA 0.923 1 NA NA NA NA NA LTS-003 chr16 89166984 89590534 423551 * c(LOC100287036, CDH15, SLC22A31, ZNF778, ACSF3, LINC00304, ANKRD11, LOC400558, SPG7) 0.428315589201309 10 0.0361141708105466 1.02165649424703 592 0.235713439004967 2 1 1 -6.7672122176631 LTS-003 chr16 89590535 89713174 122640 * c(DPEP1, CPNE7, CHMP1A, SNORD68, RPL13, SPG7) 0.43077475785165 16 0.0484454590235246 0.763064394730152 379 0.167173884679172 2 1 1 -6.87212013904708 LTS-003 chr16 89713175 89735923 22749 * c(SPATA33, CHMP1A) 0.354 1 NA 0.776908592502136 47 0.212105830757332 2 2 0 -5.77798506511746 LTS-003 chr16 89735924 90161231 425308 * c(VPS9D1-AS1, URAHP, TUBB3, PRDM7, SPATA2L, SPATA33, AFG3L1P, FANCA, TCF25, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.373027112560714 74 0.0714607049950235 0.759246641828352 1350 0.216078184881572 2 1 1 -7.43202678346349 LTS-003 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.179 1 NA NA NA NA NA LTS-003 chr17 6004 6115 112 * DOC2B 0.285 1 NA 0.378146488192253 3 0.22232708636901 1 1 0 -5.76462106376384 LTS-003 chr17 6116 6616736 6610621 * c(C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, P2RX5-TAX1BP3, MIR4520-1, MIR4520-2, ALOX15P1, LOC101559451, MYBBP1A, PRPF8, KIF1C, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, ENO3, NLRP1, RAP1GAP2, CAMTA2, ZZEF1, CLUH, SMG6, WSCD1, SHPK, AIPL1, ALOX15, RNF167, OR1A2, PELP1, GP1BA, LOC284009, VMO1, SLC13A5, TUSC5, NA NA NA NA NA NA NA NA NA LTS-003 ABR, TIMM22, TAX1BP3, HIC1, LOC339166, SMTNL2, RFLNB, ITGAE, GLTPD2, INCA1, SCIMP, OR3A4P, C17orf97, MED11, MIR132, MIR212, MIR22, ARRB2, MNT, ASPA, MYO1C, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, ANKFY1, SERPINF1, INPP5K, PFN1, PITPNA, PLD2, SERPINF2, FAM64A, SLC52A1, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, CXCL16, RPA1, SRR, NXN, OR1D4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 SNORD91A, SNORD91B, C1QBP, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, FAM57A, PITPNM3, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, DOC2B, ZNF594, SPATA22, TXNDC17, MIR22HG, SCARF1, TM4SF5, USP6, RABEP1, RPH3AL, SPAG7, KIAA0753, SGSM2) 0.224533186440653 201 0.0669752230120396 0.625067762603662 9193 0.220287059975225 1 1 0 -8.28602442411384 LTS-003 NA NA NA NA LTS-003 chr17 6616737 6616746 10 * SLC13A5 NA 0 NA 0.777 1 NA NA NA NA NA LTS-003 chr17 6616747 6659328 42582 * XAF1 NA 0 NA 1.083 1 NA NA NA NA NA LTS-003 chr17 6659329 6662320 2992 * XAF1 0.097 1 NA 1.04944429376489 11 0.303853014705226 2 2 0 -5.76456382808911 LTS-003 chr17 6662321 7011212 348892 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, CLEC10A, SLC16A11, FBXO39, SLC16A13, ALOX12, ALOX12P2, BCL6B, ASGR2, XAF1, MIR497, TEKT1) 0.114143662369523 5 0.0115238882327103 1.08703206785177 562 0.252375423815571 2 2 0 -9.24954923708801 LTS-003 chr17 7011213 7011726 514 * ASGR2 NA 0 NA 2.628 1 NA NA NA NA NA LTS-003 chr17 7011727 7852926 841200 * c(TMEM256-PLSCR3, SENP3-EIF4A1, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, CLDN7, DNAH2, KCTD11, DLG4, DVL2, EFNB3, EIF5A, C17orf74, FGF11, KDM6B, CTDNEP1, ELP5, TMEM256, SENP3, SNORA67, LOC284023, TMEM102, GPS2, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, ATP1B2, YBX2, POLR2A, WRAP53, PLSCR3, NLGN2, ZBTB4, TRAPPC1, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, NA NA NA NA NA NA NA NA NA LTS-003 TP53, PHF23, NAA38, NEURL4, TNK1, TNFSF13, TNFSF12, KCNAB3, TMEM88, FXR2, MPDU1, CD68, ACAP1) 0.0671257493991311 64 0.0183397107414311 1.85168765261499 3908 0.448742099782499 3 3 0 -7.05058226532968 LTS-003 NA NA NA NA LTS-003 chr17 7852927 7906264 53338 * c(CNTROB, GUCY2D) NA 0 NA 0.917 1 NA NA NA NA NA LTS-003 chr17 7906265 7951878 45614 * c(ALOX15B, GUCY2D) 0.116938487173829 5 0.0111220501707194 1.11555931414555 189 0.265026073326658 10 9 1 -7.34584171503339 LTS-003 chr17 7951879 7960625 8747 * ALOX15B 0.131 1 NA 0.897429431743603 19 0.182050439639951 2 2 0 -5.76513271959336 LTS-003 chr17 7960626 8739821 779196 * c(LOC100128288, MIR4314, NA, MIR4521, KRBA2, CCDC42, PIK3R6, ODF4, MFSD6L, ARHGEF15, ALOX12B, LINC00324, RANGRF, SPDYE4, SLC25A35, MYH10, PER1, PFAS, BORCS6, ALOXE3, RPL26, RNF222, VAMP2, CTC1, NDEL1, TMEM107, HES7, AURKB) 0.141699448113153 47 0.0697133618574059 1.06955842323116 1704 0.317249691177889 2 2 0 -7.15884120506656 LTS-003 chr17 8739822 8814923 75102 * c(PIK3R6, PIK3R5) NA 0 NA 1.12275896096086 163 0.204611641236405 2 NA NA -5.79063981545931 LTS-003 chr17 8814924 8925613 110690 * c(PIK3R5, NTN1) NA 0 NA 0.764 1 NA NA NA NA NA LTS-003 chr17 8925614 9143476 217863 * NTN1 0.316 1 NA 0.644602994003856 59 0.143993171066726 1 1 0 -5.88160541551235 LTS-003 chr17 9143477 12905703 3762227 * c(MIR744, LINC00675, MAGOH2P, TMEM220-AS1, USP43, CFAP52, DNAH9, DHRS7C, LINC00670, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, GAS7, MYH13, GLP2R, MYOCD, NTN1, STX8, ARHGAP44) 0.220207486793266 46 0.0814976363724711 0.689509144506261 2940 0.168924130462321 1 1 0 -9.43880247049797 LTS-003 chr17 12905704 12905743 40 * ELAC2 0.27 1 NA 0.314 1 NA NA NA NA NA LTS-003 chr17 12905744 16649035 3743292 * c(MIR1288, TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CDRT15, USP32P1, TVP23C, CENPV, SNORD49A, CDRT4, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, PMP22, TTC19, ZNF286A, ZNF287, ZNF624, ELAC2, CDRT15P2, TEKT3, SNORD49B, SNORD65, UBB, MGC12916, CDRT7, CDRT15P1, PIGL, NCOR1, CCDC144A, HS3ST3B1, HS3ST3A1) 0.233316727729344 59 0.0856247675514214 0.630166256539108 2158 0.170275367336491 1 1 0 -8.1894870222705 LTS-003 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 0.982 1 NA NA NA NA NA LTS-003 chr17 16664882 16836300 171419 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) 0.228 1 NA 1.13138496545138 40 0.384211172403927 2 2 0 -5.78311497713294 LTS-003 chr17 16836301 16836397 97 * TNFRSF13B NA 0 NA 0.675 1 NA NA NA NA NA LTS-003 chr17 16836398 18379187 1542790 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, KRT17P5, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, KRT16P1, GID4, DRC3, COPS3, ATPAF2) 0.258442674959659 23 0.0761029830665037 0.637054298451816 2683 0.147991144398525 1 1 0 -8.43531231734995 LTS-003 chr17 18379188 18380081 894 * character(0) NA 0 NA 0.345 1 NA NA NA NA NA LTS-003 chr17 18380082 18456685 76604 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.259189813393968 61 0.238978192525452 0 NA NA -5.93174753699399 LTS-003 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.891 1 NA NA NA NA NA LTS-003 chr17 18483256 21199403 2716148 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, NATD1, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, MAP2K3, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, TMEM11, SPECC1, ULK2) 0.228852092868657 57 0.0992647910735079 0.635138582946202 2594 0.199067645039581 1 1 0 -7.69470062656435 LTS-003 chr17 21199404 21201719 2316 * MAP2K3 0.491 1 NA 0.744506693155999 3 0.275450540024884 2 2 0 -5.76559444632954 LTS-003 chr17 21201720 21318629 116910 * c(KCNJ12, MAP2K3) 0.394605865498488 66 0.0755949086234662 0.671173981031425 142 0.17366877129658 2 1 1 -7.17858483872125 LTS-003 chr17 21318630 21318663 34 * KCNJ12 0.328 1 NA 0.556262226363664 3 0.209313958763704 1 1 0 -5.76441017726151 LTS-003 chr17 21318664 22066835 748172 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.306651620229587 42 0.0578009922391714 0.658493059492091 292 0.228450122548028 1 1 0 -9.76030361871052 LTS-003 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.511 1 NA NA NA NA NA LTS-003 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.201 1 NA 0.650631041771786 17 0.163223795302466 1 1 0 -5.76905361922993 LTS-003 chr17 25630389 27975182 2344794 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-003 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.218238678278473 31 0.0507455596870996 0.653747293396877 4165 0.155477279346003 1 1 0 -8.87779306713739 LTS-003 NA NA NA NA LTS-003 chr17 27975183 27975281 99 * SSH2 NA 0 NA 0.645 1 NA NA NA NA NA LTS-003 chr17 27975282 30932286 2957005 * c(MIR365B, MIR3184, MIR4724, MIR4733, MIR4725, LRRC37B, CPD, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TBC1D29, EFCAB5, TMIGD1, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, PSMD11, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, GOSR1) 0.207716162598067 55 0.0688122512778497 0.615472284605784 3227 0.188310247637233 1 1 0 -7.58109889707949 LTS-003 chr17 30932287 30965634 33348 * MYO1D NA 0 NA 1.04 1 NA NA NA NA NA LTS-003 chr17 30965635 31618663 653029 * c(SPACA3, TMEM98, ASIC2, MYO1D) 0.147549617038946 3 0.027 0.939055455581031 257 0.188082514641737 1 1 0 -8.77894906129506 LTS-003 chr17 31618664 34432660 2813997 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.20719777002012 42 0.0789501967421321 0.623133397360835 2516 0.181127180598893 1 1 0 -7.58933431034983 LTS-003 chr17 34432661 34432665 5 * CCL4 NA 0 NA 0.566 1 NA NA NA NA NA LTS-003 chr17 34432666 34640942 208277 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.389613491190847 39 0.382334688153171 1 NA NA -5.8766705876194 LTS-003 chr17 34640943 34640956 14 * c(CCL4L1, NA) NA 0 NA 1.039 1 NA NA NA NA NA LTS-003 chr17 34640957 36214044 1573088 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.191814946792985 8 0.0945016061843849 0.608007800338514 1539 0.145822078626241 1 1 0 -7.14123336552757 LTS-003 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.172 1 NA NA NA NA NA LTS-003 chr17 36214814 36385038 170225 * c(YWHAEP7, LOC440434) 0.311083302290176 5 0.164351148459632 0.334096300490929 72 0.165542017109841 1 1 0 -8.15596138840766 LTS-003 chr17 36385039 36398156 13118 * LOC440434 NA 0 NA 0.481 1 NA NA NA NA NA LTS-003 chr17 36398157 37093510 695354 * c(C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, C17orf98, LASP1, MLLT6, LOC440434, GPR179, FBXO47, CWC25, PSMB3, ARHGAP23, SNORA21, PCGF2, SRCIN1, PIP4K2B, MRPL45, RPL23) 0.221637555053599 17 0.0507937003968012 0.639704492424379 1345 0.16119182249051 1 1 0 -8.11031443329032 LTS-003 chr17 37093511 37217491 123981 * c(LOC100131347, LRRC37A11P, FBXO47) NA 0 NA 0.632390688090919 43 0.13961997543879 1 NA NA -5.81757346398582 LTS-003 chr17 37217492 37219543 2052 * LOC100131347 NA 0 NA 0.843 1 NA NA NA NA NA LTS-003 chr17 37219544 37223126 3583 * c(LOC100131347, PLXDC1) 0.124 1 NA 1.01620509386966 59 0.247408668187065 2 2 0 -5.76452315957896 LTS-003 chr17 37223127 37842339 619213 * c(LOC100131347, STARD3, STAC2, ARL5C, NEUROD2, CDK12, PNMT, MED1, PLXDC1, RPL19, CACNB1, PPP1R1B, FBXL20, TCAP, PGAP3) 0.126298805837347 8 0.0351910601472265 0.965593224805912 1188 0.209193449598946 2 2 0 -7.46181314267672 LTS-003 chr17 37842340 37876114 33775 * c(ERBB2, PGAP3) NA 0 NA 0.660238619842513 84 0.163567124586677 1 NA NA -5.7841376418226 LTS-003 chr17 37876115 38080390 204276 * c(MIR4728, ZPBP2, ERBB2, IKZF3, GRB7, GSDMB, MIEN1, ORMDL3) 0 1 NA 0.96070359062293 501 0.221930471948404 2 2 0 -5.76441095062136 LTS-003 chr17 38080391 38256949 176559 * c(LRRC3C, SNORD124, CSF3, GSDMA, PSMD3, THRA, ORMDL3, NR1D1, MED24) 0.113628542283378 17 0.0281368765773568 1.26431011941175 568 0.364832093284308 2 2 0 -7.35566178438359 LTS-003 chr17 38256950 38278826 21877 * c(MSL1, NR1D1) NA 0 NA 0.769 1 NA NA NA NA NA LTS-003 chr17 38278827 38992509 713683 * c(CCR7, GJD3, KRT222, WIPF2, KRT25, TMEM99, KRT28, KRT24, CASC3, MSL1, KRT27, IGFBP4, KRT26, KRT10, RAPGEFL1, RARA, SMARCE1, TOP2A, TNS4, CDC6) 0.144228161262151 20 0.0356191477187555 0.936067239987828 1643 0.234005209179754 2 2 0 -8.05703663892897 LTS-003 chr17 38992510 39017193 24684 * TMEM99 NA 0 NA 0.624 1 NA NA NA NA NA LTS-003 chr17 39017194 39406713 389520 * c(KRTAP4-9, KRTAP4-7, KRT40, KRT23, KRT12, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.174703885514157 41 0.064474839108359 0.671566614491797 747 0.257025341174213 1 1 0 -6.96581382289631 LTS-003 chr17 39406714 39458476 51763 * c(KRTAP9-7, KRTAP9-6, KRTAP29-1, KRTAP9-9, KRTAP9-4) 0.253 1 NA 0.78330569851657 53 0.262193366417466 2 2 0 -5.78307375685602 LTS-003 chr17 39458477 40125864 667388 * c(KRTAP16-1, LOC100505782, KRTAP29-1, EIF1, P3H4, NT5C3B, CNP, LINC00974, GAST, KRT42P, KLHL10, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, ACLY, KLHL11, FKBP10, TTC25, KRTAP17-1, KRT38, KRT37, KRT36, HAP1) 0.243406566829642 65 0.0675367884079598 0.64339054544042 1727 0.17584592595462 1 1 0 -8.01833909034438 LTS-003 chr17 40125865 40126133 269 * CNP 0.188 1 NA 0.85511678000948 3 0.0613297100379036 2 2 0 -5.76498389977925 LTS-003 chr17 40126134 40442084 315951 * c(CNP, ZNF385C, KCNH4, KAT2A, NKIRAS2, HCRT, RAB5C, STAT5A, STAT5B, DNAJC7, DHX58, GHDC, HSPB9) NA 0 NA 0.629848697547372 737 0.14104572257929 1 NA NA -5.88686961859146 LTS-003 chr17 40442085 40443873 1789 * STAT5A NA 0 NA 0.739 1 NA NA NA NA NA LTS-003 chr17 40443874 44172117 3728244 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, GJC1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CD300LG, KIF18B, RUNDC1, NAGS, FAM134C, DHX8, DUSP3, ETV4, EZH1, GPATCH8, FAM215A, FZD2, G6PC, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, PTRF, COA3, GRN, PSMC3IP, AOC2, HSD17B1, ASB16-AS1, NA NA NA NA NA NA NA NA NA LTS-003 IFI35, ITGA2B, ARL4D, LINC00671, CCDC103, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, PPY, PYY, ATXN7L3, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, MLX, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, VPS25, TMEM101, CNTNAP1, AOC3, BECN1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2) 0.179725543289676 114 0.0619838870288338 0.759036856497062 6454 0.220085289577268 1 1 0 -9.53316590370945 LTS-003 NA NA NA NA LTS-003 chr17 44172118 44336603 164486 * character(0) 0.178763964936068 2 0.0226274169979695 0.538237754390479 45 0.226721410501518 1 1 0 -7.822865502825 LTS-003 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.386 1 NA NA NA NA NA LTS-003 chr17 44336710 44782233 445524 * character(0) NA 0 NA 0.330061468456249 69 0.0764999623890384 1 NA NA -10.7697451207368 LTS-003 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-003 chr17 44788332 45196190 407859 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.13229940781695 3 0.0821360659718575 0.769532633296657 221 0.216388625457713 2 2 0 -7.17097147167166 LTS-003 chr17 45196191 45214473 18283 * CDC27 0.333 1 NA 0.722832490712568 67 0.176075332855979 1 1 0 -5.78683547648175 LTS-003 chr17 45214474 45249391 34918 * CDC27 0.337540035166206 19 0.0950794373942372 0.70732774740604 83 0.229188459537794 3 2 1 -6.91347390495566 LTS-003 chr17 45249392 45385012 135621 * c(ITGB3, MYL4, CDC27) 0.143 1 NA 0.762968478408696 133 0.168651170987654 2 2 0 -5.91190136966612 LTS-003 chr17 45385013 45600438 215426 * c(EFCAB13, ITGB3, MRPL45P2, NPEPPS) 0.12479245500951 3 0.0498029450267083 0.755602541641646 224 0.230699130829327 1 1 0 -7.03980805888564 LTS-003 chr17 45600439 45623232 22794 * NPEPPS NA 0 NA 1.104 1 NA NA NA NA NA LTS-003 chr17 45623233 47779358 2156126 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, SP2, PRR15L, CDK5RAP3, SP6, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NA NA NA NA NA NA NA NA NA LTS-003 NPEPPS, TBKBP1) 0.110904456006495 21 0.0352159325414209 1.19227816039012 3044 0.515893388629164 2 2 0 -7.2599481431055 LTS-003 NA NA NA NA LTS-003 chr17 47779359 47780141 783 * SLC35B1 NA 0 NA 1.693 1 NA NA NA NA NA LTS-003 chr17 47780142 49825224 2045083 * c(TOB1, SLC35B1, CHAD, KAT7, WFIKKN2, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, CACNA1G-AS1, TAC4, LOC284080, ITGA3, HILS1, TOB1-AS1, NME1, NME2, UTP18, MRPL27, PDK2, LUC7L3, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, CA10, XYLT2, SGCA, SPATA20, NME1-NME2, FLJ45513, ACSF2, FAM117A, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.0962030411306311 75 0.039755160580644 1.3682047176015 3527 0.355468174495462 3 3 0 -7.19114644733976 LTS-003 chr17 49825225 50008284 183060 * CA10 NA 0 NA 0.974 1 NA NA NA NA NA LTS-003 chr17 50008285 56676886 6668602 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, HSF5, OR4D2, MSI2, COX11, DYNLL2, ANKFN1, MMD, MTVR2, STXBP4, OR4D1, C17orf47, HLF, C17orf67, RNF126P1, LPO, CUEDC1, MIR142, MPO, MRPS23, SEPT4, RNF43, MKS1, TMEM100, MSX2P1, TEX14, CA10, PCTP, SCPEP1, SRSF1, SUPT4H1, TRIM25, VEZF1, COIL, AKAP1, EPX, KIF2B, DGKE, MTMR4, NOG, TSPOAP1) 0.147681971902117 43 0.0391680226432885 0.93273409568112 2369 0.238707133384563 2 2 0 -8.03070139490395 LTS-003 chr17 56676887 64641701 7964815 * c(MIR4729, MIR4737, MIR3064, MIR5047, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, PPM1E, TANC2, GH1, GH2, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, TRIM37, RNFT1, TUBD1, TACO1, PTRH2, PECAM1, BCAS3, SMG8, NA NA NA NA NA NA NA NA NA LTS-003 PRR11, PRKCA, TEX2, TEX14, CCDC47, PSMC5, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, LOC729683, CA4, MIR454, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, STRADA, PRR29, TBX4, CD79B, MRC2, MED13) 0.137255223586428 39 0.0634305809250651 0.883985189080046 5656 0.217888071280934 2 2 0 -7.73340973210216 LTS-003 NA NA NA NA LTS-003 chr17 64641702 64683263 41562 * PRKCA NA 0 NA 1.211 1 NA NA NA NA NA LTS-003 chr17 64683264 68172326 3489063 * c(SNORA38B, LINC00674, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PRKCA, MAP2K6, PSMD12, MIR634, MIR635, CACNG1, SLC16A6, HELZ) 0.0828467060943423 32 0.0328875006896679 1.44713199584115 2374 0.370615920270541 3 3 0 -7.06688532899688 LTS-003 chr17 68172327 70117784 1945458 * c(KCNJ2, SOX9) NA 0 NA 1.22715705717895 26 0.300677194653361 3 NA NA -5.89523354394894 LTS-003 chr17 70117785 70122530 4746 * SOX9 NA 0 NA 1.9859095937343 69 0.403689689896708 5 NA NA -5.76452750446176 LTS-003 chr17 70643721 71189182 545462 * c(SLC39A11, SSTR2, COG1) 0.156 1 NA 0.925098652908726 81 0.20386744361938 2 2 0 -5.77528320872985 LTS-003 chr17 71189183 71746451 557269 * c(CDC42EP4, LINC00469, SDK2, C17orf80, CPSF4L, FAM104A, COG1) 0.135214944118151 22 0.0230258653733248 1.04498315407855 636 0.290466065769721 1 1 0 -8.0814492983844 LTS-003 chr17 71746452 71746479 28 * LINC00469 0.141 1 NA 0.245 1 NA NA NA NA NA LTS-003 chr17 71746480 80363278 8616799 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-003 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 CYTH1, OTOP2, SLC9A3R1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.147888188306611 364 0.0508052180969114 0.892730602613535 13511 0.270880779960205 2 2 0 -7.88599796919065 LTS-003 NA NA NA NA LTS-003 chr17 80363279 80363377 99 * OGFOD3 NA 0 NA 0.983 1 NA NA NA NA NA LTS-003 chr17 80363378 80386556 23179 * c(HEXDC, OGFOD3) 0.16 1 NA 1.85408692127471 38 0.782362412974133 4 4 0 -5.76447574545953 LTS-003 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.819 1 NA NA NA NA NA LTS-003 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.159135970894617 27 0.0331039974002332 0.871269437458471 885 0.249920996096156 1 1 0 -7.85971533092968 LTS-003 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.02863615432939 13 0.179214096286236 2 NA NA -5.76730320872187 LTS-003 chr18 116845 331827 214983 * c(ROCK1P1, COLEC12, USP14, THOC1) 0.258 1 NA 1.6749556982373 223 0.447897708511693 4 4 0 -5.76588301122284 LTS-003 chr18 331828 2919634 2587807 * c(NDC80, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TYMS, YES1, COLEC12, EMILIN2, LPIN2) 0.25979866692191 18 0.0890799193204832 1.5917743857818 1012 0.370582814642209 4 3 1 -6.85504557207983 LTS-003 chr18 2919635 3067594 147960 * c(LOC727896, MYOM1, LPIN2) NA 0 NA 1.63859677470342 139 0.995215968207947 4 NA NA -5.76484696026009 LTS-003 chr18 3067595 3071810 4216 * MYOM1 NA 0 NA 1.09 1 NA NA NA NA NA LTS-003 chr18 3071811 3164385 92575 * MYOM1 0.386 1 NA 1.31956972470278 129 0.316251158767065 3 3 0 -5.76488238409487 LTS-003 chr18 3164386 3845304 680919 * c(MYL12B, MYL12A, DLGAP1-AS1, TGIF1, MYOM1, DLGAP1) 0.355077049093819 10 0.0480510145574472 1.34653461879689 410 0.300324676406836 3 2 1 -6.73489752368045 LTS-003 chr18 3845305 8546022 4700718 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.44989998265127 65 0.0660808908430825 1.05253700421361 1399 0.507896765427389 2 1 1 -6.8570317531875 LTS-003 chr18 8546023 14866503 6320481 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.433348734879841 126 0.0692873913722735 0.957289726927161 3382 1.11461840712322 2 1 1 -6.73317762820449 LTS-003 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.1584086015431 33 0.483783338057253 3 NA NA -5.77349757129626 LTS-003 chr18 18529727 18529837 111 * ROCK1 0.444 1 NA 0.810590058269436 3 0.416462883500239 2 2 0 -5.76442104560504 LTS-003 chr18 18529838 22804530 4274693 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.458614553175845 35 0.0873716778140011 0.937137482041241 2597 0.221998918475229 2 1 1 -6.80950461547439 LTS-003 chr18 22804531 30792002 7987472 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, SLC25A52, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, TRAPPC8, ZNF521, KCTD1, AQP4, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, SS18, TAF4B, TTR, PCAT18, CHST9, B4GALT6) 0.390457310501196 51 0.121453969332693 1.1653820354765 2479 0.356080910096481 3 2 1 -7.56967701007587 LTS-003 chr18 30792003 30795552 3550 * CCDC178 NA 0 NA 1.511 1 NA NA NA NA NA LTS-003 chr18 30795553 31803451 1007899 * c(CCDC178, ASXL3, NOL4) 0.435766318111813 2 0.0643467170879758 1.57885349471616 352 0.423873831609154 4 2 2 -6.77158634135674 LTS-003 chr18 31803452 33785220 1981769 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, MIR187, MOCOS, RPRD1A, ELP2, ZNF24, C18orf21, ZNF397, NOL4) 0.463516816570234 22 0.0525795418875842 0.987983344966584 1336 0.412429959222427 2 1 1 -6.91812274981654 LTS-003 chr18 33785221 34092516 307296 * c(MOCOS, FHOD3) 0.335254587140886 6 0.0359833294735215 1.38239543189078 141 0.431269537624767 3 2 1 -6.87066694974628 LTS-003 chr18 34092517 34156398 63882 * FHOD3 NA 0 NA 1.1 1 NA NA NA NA NA LTS-003 chr18 34156399 45555829 11399431 * c(MIR4319, MIR4318, TCEB3CL2, MIR5583-2, MIR5583-1, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, SMAD2, RNF165, ATP5A1, IER3IP1, TCEB3B, PIK3C3, CELF4, KIAA1328, EPG5, RIT2, KC6, MIR924HG, SKOR2, SLC14A1, SYT4, FHOD3, SLC14A2, KATNAL2, HDHD2, PSTPIP2, PIAS2) 0.432841385701942 62 0.105637016571973 0.970493670623654 2930 0.246866993380662 2 1 1 -6.74599855394308 LTS-003 chr18 45555830 45555841 12 * ZBTB7C NA 0 NA 1.299 1 NA NA NA NA NA LTS-003 chr18 45555842 46288021 732180 * c(MIR4743, ZBTB7C, CTIF) 0.349947668525116 2 0.0014142135623731 1.35510326417662 113 0.259501207585448 3 2 1 -8.39581356855679 LTS-003 chr18 46288022 46343625 55604 * CTIF NA 0 NA 1.109 1 NA NA NA NA NA LTS-003 chr18 46343626 51060972 4717347 * c(SNORD58C, LINC01630, MIR1539, MIR4320, RPL17-C18orf32, MIR4744, ACAA2, DCC, SKA1, CFAP53, SNORD58B, SNORD58A, CXXC1, SMAD4, SMAD7, MBD1, ME2, MYO5B, C18orf32, MEX3C, DYM, ELAC1, MAPK4, RPL17, SCARNA17, MRO, LIPG, CTIF) 0.43536890455982 30 0.0884518766491623 0.976360663443372 1838 0.242730544583518 2 1 1 -6.7465422170946 LTS-003 chr18 51060973 51061001 29 * DCC 0.474 1 NA 1.808 1 NA NA NA NA NA LTS-003 chr18 51061002 54694857 3633856 * c(LINC01539, MIR4529, POLI, STARD6, C18orf54, DCC, WDR7, DYNAP, RAB27B, SNORA37, TCF4, CCDC68, MBD2, TXNL1) 0.301398974972879 9 0.222399977517984 0.946193066026819 1039 0.297297724765176 2 1 1 -6.94536466903871 LTS-003 chr18 54694858 54696383 1526 * WDR7 0.468 1 NA 0.972648678181417 35 0.186762429417741 2 2 0 -5.7644145201121 LTS-003 chr18 54696384 61390454 6694071 * c(LOC100505549, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, SERPINB3, SERPINB4, TNFRSF11A, SERPINB12, SERPINB11, SEC11C, ONECUT2, VPS4B) 0.457322276618695 102 0.0541756393864574 0.960537763888596 3700 0.288028405919045 2 1 1 -6.83919484136961 LTS-003 chr18 61390455 64211251 2820797 * c(CDH7, LINC00305, HMSD, LOC284294, CDH19, LINC01538, SERPINB2, SERPINB8, SERPINB10, SERPINB7, SERPINB11) 0.451790633787868 14 0.0321531363295119 1.06646943480443 576 0.298344098942467 2 1 1 -7.10761642956859 LTS-003 chr18 64211252 65180690 969439 * c(MIR5011, CDH19, DSEL) NA 0 NA 1.10634056031223 172 0.239581734317833 2 NA NA -5.96133160467672 LTS-003 chr18 65180691 66346662 1165972 * c(TMX3, LOC643542, DSEL) 0 1 NA 0.990014371144107 53 0.203282791508916 2 2 0 -5.78024725026854 LTS-003 chr18 66346663 72188038 5841376 * c(LINC01541, LOC100505817, CD226, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, RTTN, TIMM21, LOC400655, TMX3, CNDP2, C18orf63, CCDC102B, NETO1, SOCS6) 0.398340953573869 24 0.174406488378173 0.945371605784681 1168 0.275312267682329 2 1 1 -6.76958231220282 LTS-003 chr18 72188039 72201918 13880 * c(CNDP2, CNDP1) 0.486 1 NA 0.933761304540661 13 0.170649325541276 2 2 0 -5.76463227866705 LTS-003 chr18 72201919 77897478 5695560 * c(LOC100131655, RBFADN, TSHZ1, TXNL4A, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, ZNF236, RBFA, PQLC1, CNDP1, CTDP1, ZNF516) 0.455423278359763 59 0.0409710236732001 0.943573285986681 2025 0.228955178897062 2 1 1 -6.90768713522122 LTS-003 chr18 77897479 77898026 548 * ADNP2 NA 0 NA 0.816152366126375 12 0.0990122428915952 2 NA NA -5.76529395101466 LTS-003 chr18 77898027 78005362 107336 * c(PARD6G-AS1, ADNP2, PARD6G) NA 0 NA 0.570222015043924 107 0.132510245209655 1 NA NA -5.76524362579051 LTS-003 chr19 107416 282735 175320 * c(LINC01002, OR4F17, PLPP2) 0.404 1 NA 0.838566080987603 17 0.230125988511153 2 2 0 -5.80060634079179 LTS-003 chr19 282736 3645947 3363212 * c(C19orf71, MED16, LOC100288123, MIR1909, MIR1227, MIR3187, MIR4321, MIR4745, FSTL3, APC2, ABCA7, HMG20B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, ZNF555, AES, CFD, ARID3A, EFNA2, ELANE, SBNO2, PIP5K1C, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, FGF22, GNA11, NA NA NA NA NA NA NA NA NA LTS-003 GNA15, GNG7, SMIM24, ODF3L2, MKNK2, GPX4, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, FZR1, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, BTBD2, RNF126, PRTN3, AZU1, NCLN, SPPL2B, PTBP1, WDR18, REXO1, ZNF77, CACTIN, CELF5, HCN2, RPS15, SGTA, LINGO3, STK11, BSG, TBXA2R, TCF3, THOP1, TLE2, TLE6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 PLPPR3, ZNF556, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, LMNB2, MUM1, PLPP2, S1PR4, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.420414603708891 237 0.0694257817827243 0.794554313508745 6621 0.208475945714462 2 1 1 -8.08081675955373 LTS-003 NA NA NA NA LTS-003 chr19 3645948 3730169 84222 * c(PIP5K1C, TJP3) 0.352 1 NA 0.791412686878038 63 0.184861310297907 2 2 0 -5.81914417086524 LTS-003 chr19 3730170 3771665 41496 * c(MRPL54, TJP3, RAX2, APBA3) 0.442 1 NA 0.775479809997098 201 0.176391684238959 2 2 0 -5.80070205166868 LTS-003 chr19 3771666 4792632 1020967 * c(DPP9-AS1, CHAF1A, MIR4746, EBI3, SEMA6B, LRG1, TMIGD2, TNFAIP8L1, DAPK3, ANKRD24, EEF2, ZFR2, SNORD37, NMRK2, MIR7-3HG, MIR7-3, MATK, PLIN5, ZBTB7A, SIRT6, PIAS4, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, SHD, SH3GL1, MIR637, PLIN4, FSD1, UBXN6, CREB3L3, HDGFRP2, RAX2, MPND, ATCAY, DPP9) 0.316303069229795 44 0.0672767154980307 1.13292880650609 1924 0.341770049539983 3 2 1 -7.07167255016067 LTS-003 chr19 4792633 8642339 3849707 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4999, PLIN3, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, TICAM1, ZNRF4, PRR22, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ARHGEF18, FUT3, FUT5, FUT6, KANK3, TINCR, CATSPERD, RPL36, SLC25A41, MBD3L5, UHRF1, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, NA NA NA NA NA NA NA NA NA LTS-003 VMAC, CTXN1, MLLT1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, NRTN, FLJ25758, ANGPTL4, MARCH2, CD320, FEM1A, MAP2K7, PSPN, RETN, GPR108, DUS3L, XAB2, MCOLN1, CAMSAP3, PTPRS, RFX2, RPS28, SAFB, CCL25, ARRDC5, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, ACSBG2, CLPP, CAPS, PRAM1, ALKBH7, ZNF414, FBN3, RANBP3, KHSRP, TNFSF14, TNFSF9, RAB11B, CRB3, PEX11G, TRIP10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 LONP1, SAFB2, CD70) 0.359070223465184 173 0.079241651589845 1.24898890656043 5862 0.449674422624137 3 2 1 -6.81672885497816 LTS-003 NA NA NA NA LTS-003 chr19 8642340 8645769 3430 * ADAMTS10 NA 0 NA 0.86 1 NA NA NA NA NA LTS-003 chr19 8645770 9005719 359950 * c(ZNF558, ACTL9, OR2Z1, ADAMTS10, MBD3L1, MUC16) 0.373395978196387 13 0.091563765087086 1.04069456448239 417 0.255785929749961 3 2 1 -6.98947864772136 LTS-003 chr19 9005720 9008264 2545 * MUC16 0.045 1 NA 0.927881231870966 23 0.430557213194707 2 2 0 -5.76441975947626 LTS-003 chr19 9008265 9021096 12832 * MUC16 0.184405055410857 9 0.148248946033353 1.08567488737849 93 0.495765446773087 6 5 1 -6.75622009063733 LTS-003 chr19 9021097 9021107 11 * MUC16 0.362 1 NA 2.278 1 NA NA NA NA NA LTS-003 chr19 9021108 9045734 24627 * MUC16 0.359 1 NA 1.06545704260815 64 0.335493372994777 2 2 0 -5.76583145087356 LTS-003 chr19 9045735 9408033 362299 * c(OR7D4, OR7G1, OR1M1, OR7D2, OR7E24, ZNF699, OR7G2, OR7G3, ZNF317, MUC16) 0.377617297703876 19 0.054355393218427 1.24908892053324 1019 0.314238738957853 3 2 1 -6.8723509663105 LTS-003 chr19 9408034 9408658 625 * ZNF699 0.428 1 NA 1.10616318342531 5 0.336295703213704 2 2 0 -5.76447647319564 LTS-003 chr19 9408659 9434872 26214 * c(ZNF699, ZNF559) 0.476 1 NA 0.898464811895047 15 0.147021605150238 2 2 0 -5.76761703120973 LTS-003 chr19 9434873 12405552 2970680 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, ZNF625-ZNF20, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, ZNF433, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF561-AS1, ZNF763, ZNF844, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, ZNF788, LDLR, ZNF833P, NA NA NA NA NA NA NA NA NA LTS-003 MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, ZNF44, PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF878, ZNF20, ZNF69, ZNF121, ZNF136, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, ZNF625, ZNF700, ZNF439, S1PR2, ZNF561, OLFM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 RAB3D, KEAP1) 0.451829958397226 125 0.0590639893565418 0.922216419981965 5715 0.251861072103699 2 1 1 -6.83055768421423 LTS-003 NA NA NA NA LTS-003 chr19 12405553 12428996 23444 * c(ZNF563, ZNF44) 0 1 NA 1.10084489646006 23 0.650032863261665 2 2 0 -5.76503249171612 LTS-003 chr19 12428997 12786917 357921 * c(ZNF443, ZNF563, ZNF791, ZNF564, ZNF709, DHPS, MAN2B1, WDR83OS, ZNF490, ZNF442, WDR83, ZNF799) 0.431782777631056 7 0.0596082448755444 0.883204399214716 752 0.209323815413165 2 1 1 -6.76813501847808 LTS-003 chr19 12786918 12787967 1050 * DHPS NA 0 NA 1.299 1 NA NA NA NA NA LTS-003 chr19 12787968 12951887 163920 * c(RNASEH2A, DHPS, MAST1, SNORD41, HOOK2, TNPO2, JUNB, ASNA1, BEST2, PRDX2, C19orf43, RTBDN, FBXW9) NA 0 NA 1.07449259996838 585 0.22350025688682 2 NA NA -5.78923077785077 LTS-003 chr19 12951888 12954319 2432 * MAST1 NA 0 NA 1.365 1 NA NA NA NA NA LTS-003 chr19 12954320 13482692 528373 * c(KLF1, NACC1, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, LYL1, NFIX, TRMT1, RAD23A, CACNA1A, CALR, STX10, GADD45GIP1, IER2) 0.38505266331029 14 0.0448321043719518 1.27207026101207 961 0.289806692812211 3 2 1 -7.04711498523349 LTS-003 chr19 13482693 13563704 81012 * CACNA1A NA 0 NA 0.877 1 NA NA NA NA NA LTS-003 chr19 13563705 14499069 935365 * c(LOC100507373, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, NANOS3, PALM3, MIR181C, CC2D1A, PRKACA, ASF1B, MIR181D, RFX1, C19orf67, ZSWIM4, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, SAMD1, DCAF15, IL27RA, ADGRE5) 0.438457837347913 7 0.0441830607489211 0.929028369240299 1175 0.204316402563215 2 1 1 -6.75282304246655 LTS-003 chr19 14499070 14499151 82 * ADGRE5 NA 0 NA 1.048 1 NA NA NA NA NA LTS-003 chr19 14499152 18779797 4280646 * c(TMEM221, MIR1470, MIR3188, MIR3189, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, GIPC1, ILVBL, CYP4F8, PGLYRP2, CCDC124, NXNL1, CIB3, CALR3, LRRC25, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, LINC00905, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, BRD4, CASP14, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, NA NA NA NA NA NA NA NA NA LTS-003 OR10H5, NWD1, BABAM1, ADGRE2, DNAJB1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, CYP4F3, RAB8A, MYO9B, NDUFB7, NOTCH3, PDE4C, ISYNA1, PIK3R2, PGPEP1, C19orf60, MAP1S, KLHL26, PKN1, USE1, PTGER1, ANO8, CYP4F11, EPS15L1, WIZ, RAB3A, RPL18A, RASAL3, MRPL34, SLC1A6, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 EPHX3, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, CRLF1, HAUS8, MVB12A, MED26, GDF15, TECR, ADGRE5) 0.366207808579953 231 0.0709810468760644 1.26441585375601 7419 0.330246483722428 3 2 1 -6.87397714279788 LTS-003 NA NA NA NA LTS-003 chr19 18779798 18980172 200375 * c(COMP, CRTC1, GDF1, KLHL26, UPF1) 0.351463093549618 4 0.221776727062753 0.979309272329929 321 0.208917433412449 2 1 1 -6.81672749186623 LTS-003 chr19 18980173 19218805 238633 * c(SUGP2, CERS1, COPE, GDF1, SLC25A42, DDX49, ARMC6, HOMER3) 0.483 1 NA 0.926364126360474 398 0.182143327672195 2 2 0 -5.76994423901146 LTS-003 chr19 19218806 19770774 551969 * c(MEF2B, NR2C2AP, NCAN, CILP2, MAU2, SLC25A42, YJEFN3, HAPLN4, BORCS8-MEF2B, NDUFA13, GMIP, TM6SF2, GATAD2A, TMEM161A, ATP13A1, SUGP1, BORCS8, PBX4, TSSK6, RFXANK, LPAR2) 0.458942536153538 30 0.0316189416531352 0.946404341848806 1361 0.218015115160567 2 1 1 -7.07760166401636 LTS-003 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.585 1 NA NA NA NA NA LTS-003 chr19 19772755 21933550 2160796 * c(ZNF737, MIR1270, ZNF738, ZNF714, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, LINC00664, ZNF506, ZNF253, ATP13A1, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF85, ZNF90, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.436641475333465 37 0.0594501961798767 0.823197060556261 844 0.286723774487215 2 1 1 -7.08595943801287 LTS-003 chr19 21933551 21948531 14981 * c(ZNF100, LOC641367) NA 0 NA 1.238 1 NA NA NA NA NA LTS-003 chr19 21948532 24309361 2360830 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF681, ZNF676, ZNF100, ZNF675, ZNF728, RPSAP58, GOLGA2P9, ZNF724, ZNF492, ZNF726, ZNF43, ZNF91, ZNF99, ZNF208, ZNF254) 0.438240608180112 16 0.0386703482442728 1.03375787162581 732 0.316846629529439 2 1 1 -6.81516218582921 LTS-003 chr19 24309362 24345121 35760 * c(HAVCR1P1, ZNF254) NA 0 NA 0.898546533542345 15 0.228308834278317 2 NA NA -5.76621972865849 LTS-003 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.442 1 NA 1.05166363717728 5 0.149766484902331 2 2 0 -6.04353203779258 LTS-003 chr19 29567135 38262407 8695273 * c(HPN-AS1, LINC01531, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, THEG5, UBA2, LINC00904, MIR5196, UPK1A-AS1, TMEM147, CEBPA, CEBPG, POP4, HCST, UPK1A, SLC7A9, TBCB, ARHGAP33, ZNF573, WDR88, WTIP, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, DPY19L3, ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, LGI4, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, ZNF507, HAUS5, NA NA NA NA NA NA NA NA NA LTS-003 ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, GPI, LOC284395, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF181, ZNF260, VSTM2B, ZNF850, SBSN, ZNF829, ZNF568, RGS9BP, KRTDAP, ZNF790, NUDT19, ZNF793, LOC400684, LOC400685, LRP3, MAG, NPHS1, ATP4A, ZNF571, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, GPATCH1, PSENEN, ZNF302, LIN37, SLC7A10, TSHZ3, GRAMD1A, ZFP14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ZNF529, HAMP, PRODH2, SCN1B, SCGB1B2P, CHST8, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, UQCRFS1, USF2, ZNF146, KCTD15, PLEKHF1, RBM42, LRFN3, IGFLR1, CEBPA-AS1, CAPNS1, C19orf12, KIRREL2, ANKRD27, PDCD2L, ZNF527, ZNF607, NFKBID, CEP89, ZNF382, ZNF566, ALKBH6, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, ZNF461, ZNF585B, DMKN, CD22, NA, KIAA0355, ZNF536, KMT2B) 0.442139654332218 178 0.0651911255287984 0.987247302856093 7813 0.243606858976898 2 1 1 -6.8089406455629 LTS-003 NA NA NA NA LTS-003 chr19 38262408 38264245 1838 * ZNF573 NA 0 NA 1.241 1 NA NA NA NA NA LTS-003 chr19 38264246 38380956 116711 * c(LOC100631378, ZNF573, LOC644554, WDR87) 0.451156251112631 5 0.0387595149608454 1.22348792188931 142 0.241527864065346 2 1 1 -6.91370712386613 LTS-003 chr19 38380957 38382160 1204 * WDR87 NA 0 NA 0.928 1 NA NA NA NA NA LTS-003 chr19 38382161 39440918 1058758 * c(SPINT2, MAP4K1, FBXO17, RASGRP4, RINL, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, HNRNPL, LGALS4, LGALS7, SPRED3, NFKBIB, SARS2, PSMD8, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, LGALS7B, ACTN4, DPF1, WDR87, YIF1B, KCNK6, PPP1R14A) 0.453054568535887 45 0.0386331751506684 0.930602585982658 2353 0.209827325021533 2 1 1 -6.88481345887595 LTS-003 chr19 39440919 39440966 48 * FBXO17 0.365 1 NA 0.928915160013528 3 0.188693755416901 2 2 0 -5.76441100112834 LTS-003 chr19 39440967 39440992 26 * FBXO17 NA 0 NA 0.888 1 NA NA NA NA NA LTS-003 chr19 39440993 39443153 2161 * FBXO17 NA 0 NA 1.27 1 NA NA NA NA NA LTS-003 chr19 39443154 40354067 910914 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, FBXO27, LGALS16, EID2, FBL, IFNL2, IFNL3, IFNL1, LGALS13, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS17A, PAF1, SAMD4B, MED29, LGALS14, LRFN1, RPS16, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.383327135487069 17 0.110033016435442 1.29047267872903 1267 0.260871971630228 3 2 1 -6.80044261636954 LTS-003 chr19 40354068 40354143 76 * FCGBP NA 0 NA 0.862 1 NA NA NA NA NA LTS-003 chr19 40354144 40595340 241197 * c(ZNF780B, ZNF780A, ZNF546, PSMC4, FCGBP) 0.441586497976155 17 0.0464828399709474 0.906180282517973 673 0.252023938422727 2 1 1 -6.75522803331288 LTS-003 chr19 40595341 40697977 102637 * c(ZNF780A, MAP3K10) NA 0 NA 1.106 1 NA NA NA NA NA LTS-003 chr19 40697978 44612231 3914254 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, MIA-RAB4B, RAB4B-EGLN2, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, EGLN2, ZNF526, IRGQ, ZNF428, C19orf47, LYPD4, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, CADM4, ERF, AKT2, CYP2G1P, CIC, ETHE1, PRG1, PLD3, LYPD3, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, NA NA NA NA NA NA NA NA NA LTS-003 ZNF575, LYPD5, ZNF283, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, ZNF404, ZNF284, B3GNT8, KCNN4, PINLYP, LIPE, MAP3K10, PSG8, CEACAM6, ATP1A3, PAFAH1B3, PLAUR, RAB4B, POU2F2, ATP5SL, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CD177, PRX, SPTBN4, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, MIR641, TGFB1, XRCC1, ZNF45, ZNF221, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ZNF222, ZNF155, ZNF223, ZNF224, ZNF230, ZNF576, COQ8B, CNTD2, ITPKC, B9D2, MIA, TEX101, LTBP4, CNFN, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, CD79A) 0.376373415917942 128 0.0597117893337075 1.27104802063859 5990 0.303565658486465 3 2 1 -6.93717485823054 LTS-003 NA NA NA NA LTS-003 chr19 44612232 44636799 24568 * c(LOC100379224, ZNF224, ZNF225) NA 0 NA 1.38772322938114 54 0.263260052033167 3 NA NA -5.76450569348523 LTS-003 chr19 44636800 44648725 11926 * c(ZNF234, ZNF225) NA 0 NA 1.01 1 NA NA NA NA NA LTS-003 chr19 44648726 44660967 12242 * ZNF234 0.458 1 NA 0.928626085957591 23 0.162230731603725 2 2 0 -5.76472118992285 LTS-003 chr19 44660968 47126739 2465772 * c(EML2-AS1, MIR642B, PPP5D1, APOC4-APOC2, MIR4531, RNU6-66P, TOMM40, ZNF234, PPP1R13L, CD3EAP, CLASRP, CKM, CLPTM1, CEACAM20, PPM1N, KLC3, IGSF23, SIX5, IGFL2, ZNF296, DMPK, DMWD, ERCC1, ERCC2, FBXO46, FOSB, CBLC, EML2, IRF2BP1, GIPR, ZNF285, GPR4, PPP1R37, NKPD1, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, ZNF233, IGFL1, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, BCAM, MIR330, IGFL4, NOVA2, NA NA NA NA NA NA NA NA NA LTS-003 QPCTL, PNMAL1, PPP5C, CEACAM19, PTGIR, PNMAL2, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, HIF3A, SNRPD2, MIR642A, CCDC61, VASP, MIR769, ZNF180, ZNF226, ZNF227, ZNF112, ZNF229, TRAPPC6A, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, PGLYRP1, EXOC3L2, ZNF235, LOC93429) 0.461245092372866 69 0.0414254947013695 0.967834373889083 4126 0.213548175151151 2 1 1 -6.97822333118414 LTS-003 NA NA NA NA LTS-003 chr19 47126740 47126807 68 * PTGIR 0.485 1 NA 0.384 1 NA NA NA NA NA LTS-003 chr19 47126808 50453317 3326510 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, MIR3191, MIR3190, MIR320E, MIR4324, NAPA-AS1, CARD8-AS1, PTOV1-AS1, DACT3-AS1, GFY, SAE1, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, AP2S1, CPT1C, ALDH16A1, NTN5, CRX, CCDC155, DACT3, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, FCGRT, ATF5, CARD8, NA NA NA NA NA NA NA NA NA LTS-003 ZC3H4, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, BBC3, DKKL1, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, LIG1, MIR150, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 TMEM143, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, ELSPBP1, LIN7B, SELENOW, SLC1A5, SEC1P, SLC8A2, SNRNP70, SULT2B1, SULT2A1, SNORD23, C5AR1, TULP2, CA11, FKRP, TBC1D17, FUZ, MED25, BCL2L12, GRWD1, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, CYTH2, CCDC114, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.443778098324926 204 0.0609929001953453 0.923882907885533 7071 0.326518331870135 2 1 1 -6.77502130726103 LTS-003 NA NA NA NA LTS-003 chr19 50453318 50462298 8981 * SIGLEC11 0.343 1 NA 1.01272431186657 31 0.148613014090251 2 2 0 -5.76510326711936 LTS-003 chr19 50462299 50475208 12910 * c(SIGLEC11, SIGLEC16) 0.293775453457609 9 0.142324843618783 0.953525527370045 67 0.429003411620782 4 3 1 -6.76118092809358 LTS-003 chr19 50475209 50475259 51 * SIGLEC16 0.471 1 NA 0.449 1 NA NA NA NA NA LTS-003 chr19 50475260 52133720 1658461 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, ZNF473, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, NA NA NA NA NA NA NA NA NA LTS-003 SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, MYH14, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.437905398600089 91 0.0807018510741158 0.948987840178288 2982 0.257756189142863 2 1 1 -6.73625493309085 LTS-003 NA NA NA NA LTS-003 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.371 1 NA NA NA NA NA LTS-003 chr19 52146303 52196924 50622 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) NA 0 NA 1.4716360857596 40 0.644248227662408 3 NA NA -5.76487734632722 LTS-003 chr19 52196925 53770080 1573156 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.451507585892695 45 0.0407294225172155 0.972891618874781 2015 0.205557410118303 2 1 1 -6.84176014148037 LTS-003 chr19 53770081 53770181 101 * VN1R4 NA 0 NA 1.289 1 NA NA NA NA NA LTS-003 chr19 53770182 53793475 23294 * c(BIRC8, VN1R4, FAM90A27P) 0.365042112790083 3 0.109412065148228 1.2983664811434 67 0.417402528318608 3 2 1 -6.74085806868103 LTS-003 chr19 53793476 54314608 521133 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, ZNF813, TPM3P9, ZNF525, LOC284379, ZNF761, MIR372, MIR373, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, NA NA NA NA NA NA NA NA NA LTS-003 MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, ZNF765, NLRP12, ZNF845) 0.443736712401259 18 0.112846836449818 0.887974408385937 801 0.240953730587472 2 1 1 -6.76990806310439 LTS-003 NA NA NA NA LTS-003 chr19 54314609 54318066 3458 * NLRP12 NA 0 NA 1.158 1 NA NA NA NA NA LTS-003 chr19 54318067 54466658 148592 * c(PRKCG, CACNG8, CACNG7, NLRP12, MYADM) NA 0 NA 1.10744452949615 236 0.188204419251761 2 NA NA -5.81524381933266 LTS-003 chr19 54466659 55329019 862361 * c(MIR935, MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, OSCAR, TMC4, CDC42EP5, LILRA4, PRPF31, VSTM1, TFPT, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TARM1, NDUFA3, CNOT3, TTYH1, CACNG8, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.419585923551965 75 0.0727355768805345 0.922512341141778 2200 0.235363172355218 2 1 1 -6.77248959485946 LTS-003 chr19 55329020 55329838 819 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.164 1 NA NA NA NA NA LTS-003 chr19 55329839 55351171 21333 * c(KIR2DS4, KIR3DL1) 0.439584901795334 7 0.0362340276798586 1.46128704132193 54 0.498107557725831 4 2 2 -6.74736892170919 LTS-003 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.311 1 NA NA NA NA NA LTS-003 chr19 55358616 59074653 3716038 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, NA NA NA NA NA NA NA NA NA LTS-003 FKBP1AP1, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.444551955956231 245 0.0656732847348818 0.953772707709947 7381 0.451024240761338 2 1 1 -6.74801401967996 LTS-003 NA NA NA NA LTS-003 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.918645904051031 35 0.13791309527648 2 NA NA -5.76498593115453 LTS-003 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.489 1 NA 0.98398188117735 55 0.14693239701621 2 2 0 -5.7660832415919 LTS-003 chr20 168467 1553603 1385137 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.450496690599284 74 0.0483798297123035 0.955699177959157 1901 0.243963061796078 2 1 1 -6.79958212422408 LTS-003 chr20 1553604 1558905 5302 * SIRPB1 NA 0 NA 0.497 1 NA NA NA NA NA LTS-003 chr20 1558906 1586582 27677 * SIRPB1 NA 0 NA 0.166137511935055 40 0.162603899723002 0 NA NA -5.76460643102568 LTS-003 chr20 1586583 8770249 7183667 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PLCB1, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, TMX4, GPCPD1, CPXM1, NA NA NA NA NA NA NA NA NA LTS-003 MAVS, EBF4, PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.435841047701815 185 0.0946932635397682 0.963368372769801 5686 0.290802136418983 2 1 1 -6.73375163650847 LTS-003 NA NA NA NA LTS-003 chr20 8770250 14308112 5537863 * c(SNAP25-AS1, ISM1-AS1, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, LOC339593, ESF1, PLCB4, SPTLC3, TASP1, PAK5, ANKEF1, SNAP25, NDUFAF5, SEL1L2, MKKS) 0.459378040280222 29 0.0324560331628797 1.04415216452029 1779 0.286138847582262 2 1 1 -7.34329562060792 LTS-003 chr20 14308113 24647267 10339155 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, SEC23B, POLR3F, RBBP9, DSTN, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, FLRT3, CFAP61, SNX5, LOC284788, LINC00652, NXT1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, RIN2, DZANK1, KIF16B, KIZ, OTOR, NA NA NA NA NA NA NA NA NA LTS-003 RALGAPA2, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, NAPB, GZF1, NKX2-4, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, SYNDIG1, GGTLC1, MGME1, DTD1) 0.445595978269786 103 0.0776173135544602 0.98461736016131 4018 0.227806804915921 2 1 1 -6.8203712394158 LTS-003 NA NA NA NA LTS-003 chr20 24647268 24929832 282565 * character(0) NA 0 NA 1.631 1 NA NA NA NA NA LTS-003 chr20 24929833 24940584 10752 * CST7 0.415101947974848 3 0.0247588368062799 1.37033143393016 29 0.353193540909091 7 4 3 -6.78680968871579 LTS-003 chr20 24940585 25038484 97900 * c(APMAP, ACSS1) 0.294 1 NA 1.33302986450112 197 0.320673340695349 3 3 0 -5.76461662269803 LTS-003 chr20 25038485 25595123 556639 * c(NANP, NINL, ABHD12, LOC284798, VSX1, PYGB, ACSS1, ENTPD6, GINS1) 0.351047128752188 35 0.0529156614518873 1.33913852173913 743 0.335217077481335 3 2 1 -6.73421317150294 LTS-003 chr20 25595124 25595466 343 * NANP 0.234 1 NA 1.07429936821983 7 0.300471296466069 2 2 0 -5.76443881378837 LTS-003 chr20 25595467 26061845 466379 * c(LOC100134868, NANP, ZNF337, FAM182A, FAM182B) 0.209720097691561 14 0.136451436436171 1.32652211293355 173 0.390242476264376 4 3 1 -7.00208180881603 LTS-003 chr20 26061846 26061858 13 * FAM182A NA 0 NA 0.223 1 NA NA NA NA NA LTS-003 chr20 26061859 26188981 127123 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.271344314759742 8 0.132105409751888 0.493334158616333 42 0.598391541301772 4 3 1 -7.058536569591 LTS-003 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.784 1 NA NA NA NA NA LTS-003 chr20 29625845 29625876 32 * FRG1BP 0.184 1 NA 1.465 1 NA NA NA NA NA LTS-003 chr20 29625877 29652097 26221 * c(MLLT10P1, FRG1BP) 0.350599688077721 13 0.0940687827997997 0.879934577256628 39 0.30138321470391 3 2 1 -6.76582292111143 LTS-003 chr20 29652098 29652099 2 * FRG1BP 0.128 1 NA 1.904 1 NA NA NA NA NA LTS-003 chr20 29652100 33104592 3452493 * c(MCTS2P, MIR3193, MIR4755, HM13-AS1, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, ASIP, BPIFA1, CDK5RAP1, PLAGL2, NA NA NA NA NA NA NA NA NA LTS-003 BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.325803178080094 69 0.0666314346374249 1.29734365469395 4148 0.364495008990435 3 2 1 -6.86204454326994 LTS-003 NA NA NA NA LTS-003 chr20 33104593 33147737 43145 * c(DYNLRB1, MAP1LC3A) 0.47 1 NA 1.29805605843354 91 0.258192702830409 3 3 0 -5.76521746280153 LTS-003 chr20 33147738 33346760 199023 * c(PIGU, NCOA6, TP53INP2, MAP1LC3A) 0.423015252638095 2 0.0381837661840735 1.26934914789243 341 0.291585079373112 2 1 1 -6.8927776987727 LTS-003 chr20 33346761 45204266 11857506 * c(ADA, ACOT8, ZNF663P, LOC100287792, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, MIR499B, LINC00489, SGK2, RBM12, MMP24-AS1, MYL9, WFDC2, PROCR, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, CEP250, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, HMGB3P1, FAM83C, SLC32A1, WFDC3, MROH8, SOGA1, TLDC2, RIMS4, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, CNBD2, NA NA NA NA NA NA NA NA NA LTS-003 R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, EPB41L1, DLGAP4, ZHX3, NCOA6, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, TRPC4AP, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, WFDC10B, GSS, HNF4A, LOC339568, ARHGAP40, EIF6, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, OSER1, PIGT, ERGIC3, PI3, PLCG1, PLTP, CTSA, UQCC1, ZNF334, EDEM2, DBNDD2, ACSS2, C20orf24, CTNNBL1, EPPIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 RALGAPB, JPH2, NDRG3, MIR499A, SLC12A5, MYH7B, NCOA5, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, SLPI, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, FAM83D, GDF5, SLA2, CHD6, TOX2, KIAA1755, MATN4, WISP2, CPNE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, CD40, RBM39, TTI1, MAFB) 0.455273405247582 172 0.04883451100937 0.960209945999812 12385 0.229278501663909 2 1 1 -6.8413904089043 LTS-003 NA NA NA NA LTS-003 chr20 45204267 45364025 159759 * c(TP53RK, SLC13A3, SLC2A10) 0 1 NA 0.963790491577396 233 0.250897887669463 2 2 0 -5.76443189917868 LTS-003 chr20 45364026 47317326 1953301 * c(LOC100131496, MIR3616, EYA2, ZMYND8, LINC00494, SULF2, PREX1, SLC2A10, NCOA3) 0.353460393710977 12 0.207340226914532 0.964995200791468 846 0.259192029139171 2 1 1 -6.82338857518934 LTS-003 chr20 47317327 47580347 263021 * c(ARFGEF2, PREX1) 0.483 1 NA 0.937013905641405 65 0.214996494828315 2 2 0 -5.76644126641357 LTS-003 chr20 47580348 52553709 4973362 * c(SNORD12B, MIR3194, ATP9A, TRERNA1, CEBPB, ARFGEF2, TSHZ2, FAM65C, CSE1L, SLC9A8, ADNP, SNORD12C, MOCS3, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, SUMO1P1, ZFAS1, NFATC2, BCAS4, DDX27, ZFP64, RNF114, SALL4, ZNFX1, PTGIS, PTPN1, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, ZNF217, PARD6B, DPM1, B4GALT5, SPATA2) 0.446595991955549 69 0.054234842661962 0.940636057817261 3347 0.239195019847365 2 1 1 -6.78547452057558 LTS-003 chr20 52553710 53259964 706255 * c(MIR4756, CYP24A1, PFDN4, DOK5, BCAS1) 0.394510210612497 5 0.0556794396523528 1.23937153732533 337 0.332594589043925 3 2 1 -7.08619815089253 LTS-003 chr20 53259965 53267685 7721 * DOK5 NA 0 NA 1.14704599096518 21 0.196664810322151 3 NA NA -5.76783991273438 LTS-003 chr20 54572487 54824914 252428 * c(CBLN4, MC3R) NA 0 NA 0.68079966806225 92 0.166653892327776 1 NA NA -5.95961515866149 LTS-003 chr20 54824915 54935242 110328 * FAM210B 0.182 1 NA 0.781570724649133 7 0.283135841535304 2 2 0 -5.79917680207741 LTS-003 chr20 54935243 55111601 176359 * c(FAM210B, GCNT7, CSTF1, FAM209A, FAM209B, RTFDC1, CASS4, AURKA) 0.16992239810814 9 0.0530670435497504 0.926567400388061 405 0.218438065923547 1 1 0 -7.36881835976148 LTS-003 chr20 55111602 55204306 92705 * character(0) NA 0 NA 0.434 1 NA NA NA NA NA LTS-003 chr20 55204307 62872259 7667953 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ARFRP1, OGFR-AS1, RGS19, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, PHACTR3, BHLHE23, NKAIN4, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, CTCFL, SAMD10, ABHD16B, NA NA NA NA NA NA NA NA NA LTS-003 RBBP8NL, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, APCDD1L, EDN3, EEF1A2, LKAAEAR1, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, GNAS, SLCO4A1, NPBWR2, LINC00176, C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MIR296, MYT1, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, ARFGAP1, SLC2A4RG, PSMA7, PMEPA1, RAB22A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, TAF4, TCEA2, MIR647, TFAP2C, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, ZGPAT, RAE1, HELZ2, STX16, TNFRSF6B, VAPB, OSBPL2) 0.227822535892206 228 0.0573287488034524 0.626092350228473 8748 0.162390341752961 1 1 0 -9.33798930900973 LTS-003 NA NA NA NA LTS-003 chr20 62872260 62959313 87054 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 0.635406366797082 121 0.262596701852273 1 NA NA -5.7759063532322 LTS-003 chr21 9825764 9825838 75 * MIR3648-1 0.266 1 NA 0.62 1 NA NA NA NA NA LTS-003 chr21 9825839 9909301 83463 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.248875294703694 14 0.0744478946041392 0.694759883759406 59 0.480618946963196 4 3 1 -6.97765703684043 LTS-003 chr21 10793872 10959817 165946 * TPTE 0.330424146765386 7 0.11077218148288 0.440877261254954 64 0.217107680747786 1 1 0 -8.18530667057314 LTS-003 chr21 10959818 10969063 9246 * TPTE NA 0 NA 1.015 1 NA NA NA NA NA LTS-003 chr21 10969064 11059877 90814 * c(BAGE, TPTE, BAGE3) 0.307347456909198 15 0.0702218932079895 0.867046082788074 57 0.608932040501955 4 3 1 -6.94379220453374 LTS-003 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.861131352859452 5 0.110000909087153 2 NA NA -5.78717028251722 LTS-003 chr21 14745307 14757043 11737 * character(0) 0.245 1 NA 0.462188341113279 17 0.303619053110579 1 1 0 -5.76731263124656 LTS-003 chr21 14757044 15538864 781821 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, NA) 0.189605343273075 2 0.0183847763108502 0.557060023083255 87 0.263714531105256 1 1 0 -9.04293658888012 LTS-003 chr21 15538865 15554084 15220 * LIPI NA 0 NA 1.036 1 NA NA NA NA NA LTS-003 chr21 15554085 16031234 477150 * c(SAMSN1-AS1, LIPI, ABCC13, LOC388813, RBM11, SAMSN1, HSPA13) 0.136351713643321 6 0.0362256814980754 0.892966611151335 325 0.242815741521188 1 1 0 -7.66532523431153 LTS-003 chr21 16031235 16333550 302316 * character(0) NA 0 NA 1.439 1 NA NA NA NA NA LTS-003 chr21 16333551 16423234 89684 * NRIP1 0.0905489157322118 4 0.0159687194226713 1.31173229863921 165 0.374128655774578 2 2 0 -6.84069177666438 LTS-003 chr21 17102294 42694933 25592640 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, RNU6-67P, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, USP16, CCT8, BTG3, ADAMTS5, LINC00310, B3GALT5-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, LCA5L, IGSF5, CXADR, DSCAM, NA NA NA NA NA NA NA NA NA LTS-003 RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, LINC00323, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00317, LINC00320, MIR99AHG, KRTAP26-1, LINC00114, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, PCP4, PIGP, ATP5J, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, SETD4, FAM3B, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.226476952224693 235 0.0559504349664999 0.629332514920049 10910 0.364016084727383 1 1 0 -9.00154154411086 LTS-003 NA NA NA NA LTS-003 chr21 42694934 42710260 15327 * FAM3B NA 0 NA 0.957 1 NA NA NA NA NA LTS-003 chr21 42710261 42870141 159881 * c(MX1, MX2, FAM3B, TMPRSS2) 0.14513793041803 11 0.0394380987924575 0.977141508178252 334 0.265818362522136 1 1 0 -7.1227898203564 LTS-003 chr21 42870142 42879793 9652 * TMPRSS2 NA 0 NA 0.548 1 NA NA NA NA NA LTS-003 chr21 42879794 43863521 983728 * c(LINC00479, UMODL1-AS1, C2CD2, ZBTB21, UBASH3A, LINC00112, LINC00111, RIPK4, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TMPRSS2, UMODL1, ABCG1) 0.222932744436851 64 0.06670091382254 0.636616987567142 1292 0.188842745612139 1 1 0 -7.70049704114428 LTS-003 chr21 43863522 44152149 288628 * c(PDE9A, UBASH3A, SLC37A1, RSPH1) 0.27 1 NA 0.628179340932152 231 0.151527006349704 1 1 0 -5.85735718170702 LTS-003 chr21 44152150 48084820 3932671 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, RRP1B, DIP2A, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, NA NA NA NA NA NA NA NA NA LTS-003 KRTAP10-12, LSS, NDUFV3, PCNT, PDE9A, PFKL, PKNOX1, PCBP3, C21orf58, YBEY, TSPEAR, AGPAT3, PWP2, S100B, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP) 0.249655584583139 187 0.065330294950583 0.611797905381852 5937 0.17915958764017 1 1 0 -8.46299488829513 LTS-003 NA NA NA NA LTS-003 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 0.766468934048619 5 0.0775931698025026 2 NA NA -5.76528007358297 LTS-003 chr22 16157787 16157883 97 * character(0) 0.494 1 NA 0.487 1 NA NA NA NA NA LTS-003 chr22 16157884 18463813 2305930 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, MICAL3, BID, MIR648, OR11H1, SLC25A18) 0.442887972602748 46 0.102380836824048 0.979319416377514 1634 0.258681876020947 2 1 1 -6.74528377480515 LTS-003 chr22 18463814 18653659 189846 * c(FLJ41941, USP18, TUBA8, PEX26, MICAL3) 0.33653128531807 7 0.039325261480074 1.32317333212199 208 0.636805662201675 3 2 1 -6.83260291023536 LTS-003 chr22 18653660 18655876 2217 * USP18 NA 0 NA 0.845 1 NA NA NA NA NA LTS-003 chr22 18655877 20305282 1649406 * c(MIR1286, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, PRODH, RANBP1, MRPL40, RTN4R, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, DGCR6L, DGCR2) 0.445931757328108 71 0.0800884320089356 0.969971090556857 2622 0.340959144919841 2 1 1 -6.74647232211661 LTS-003 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 1.019 1 NA NA NA NA NA LTS-003 chr22 20307254 20398710 91457 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.408978994019092 39 0.321746041964106 1 NA NA -5.81730394231756 LTS-003 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.214 1 NA NA NA NA NA LTS-003 chr22 20717835 22681765 1963931 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, VPREB1, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, BMS1P20) 0.430594066141772 73 0.093041058186004 0.958016101550093 2551 0.255724704249275 2 1 1 -6.73408714744176 LTS-003 chr22 22681766 22707493 25728 * character(0) 0.224 1 NA 1.1334659496676 25 0.265119608227431 2 2 0 -5.77045146620822 LTS-003 chr22 22707494 22892713 185220 * c(ZNF280A, ZNF280B, PRAME) 0.291784201365285 10 0.152617204505623 1.01787923699359 238 0.501655691847644 3 2 1 -6.86362646174086 LTS-003 chr22 22892714 23063645 170932 * c(PRAME, POM121L1P, LL22NC03-63E9.3, GGTLC2) 0.48 1 NA 0.96893050558019 189 0.201148228749542 2 2 0 -5.7646200134335 LTS-003 chr22 23063646 23982817 919172 * c(IGLL5, ZDHHC8P1, FBXW4P1, RSPH14, GNAZ, IGLL1, DRICH1, BCR, CES5AP1, MIR650, GUSBP11, RAB36) 0.449007570868834 50 0.038296315163499 0.97523554898861 723 0.291317465258717 2 1 1 -6.82145697859069 LTS-003 chr22 23982818 24033063 50246 * c(RGL4, GUSBP11) NA 0 NA 1.843 1 NA NA NA NA NA LTS-003 chr22 24033064 25428701 1395638 * c(DDTL, SGSM1, ADORA2A, C22orf15, DDT, SPECC1L, CABIN1, TMEM211, GSTTP1, RGL4, GGT1, GGT5, MIF-AS1, GSTT1, POM121L9P, VPREB3, LRRC75B, LOC391322, CHCHD10, MIF, MMP11, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SMARCB1, SLC2A11, SNRPD3, TOP1P2, ZNF70, GUCD1, KIAA1671, GUSBP11, DERL3) 0.367093279582335 41 0.0557278010052258 1.29219043257621 2018 0.321371288937205 3 2 1 -6.79326480387728 LTS-003 chr22 25428702 25434790 6089 * KIAA1671 NA 0 NA 0.787 1 NA NA NA NA NA LTS-003 chr22 25434791 30035186 4600396 * c(LOC100128531, MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, RFPL1S, CHEK2, EMID1, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, GRK3, AP1B1, EWSR1, TTC28, SEZ6L, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, SRRD, MN1, MIAT, NEFH, NF2, ASPHD2, RFPL1, XBP1, KREMEN1, ZNRF3, TPST2, MYO18B, NIPSNAP1, KIAA1671, THOC5, HPS4, IGLL3P, LRP5L) 0.43951549121759 58 0.0573721888904042 0.936329612603064 3324 0.229965679908468 2 1 1 -6.77069524026478 LTS-003 chr22 30035187 30038117 2931 * NF2 NA 0 NA 1.851 1 NA NA NA NA NA LTS-003 chr22 30038118 30489876 451759 * c(HORMAD2, CABP7, UQCR10, NF2, ZMAT5, ASCC2, MTMR3) 0.355194530737418 10 0.121049530725604 1.25708387806569 578 0.267483272669526 3 2 1 -6.75606037049581 LTS-003 chr22 30489877 31090169 600293 * c(SF3A1, HORMAD2, DUSP18, RNF215, PES1, SEC14L2, OSBP2, SEC14L3, SEC14L4, SLC35E4, SDC4P, LIF, OSM, MTFP1, CCDC157, GATSL3, TCN2, SEC14L6, TBC1D10A, KIAA1656, GAL3ST1) 0.43177650694003 20 0.105760043693756 0.957945835289486 1394 0.249686756674107 2 1 1 -6.73341045083629 LTS-003 chr22 31090170 31535872 445703 * c(MIR3200, SELENOM, MORC2-AS1, MORC2, OSBP2, INPP5J, PLA2G3, TUG1, SMTN) 0.407046615950185 18 0.0672211499941495 0.845452121456157 638 0.197988456055819 2 1 1 -6.93872069582575 LTS-003 chr22 31535873 31583007 47135 * c(MIR3928, PLA2G3, RNF185) 0.319 1 NA 0.765699907423649 23 0.16510068792755 2 2 0 -5.81707857326115 LTS-003 chr22 31583008 31688572 105565 * c(PIK3IP1, LIMK2, RNF185) 0.298979092976521 7 0.0690451887913857 0.84964853406827 315 0.2408332562684 3 2 1 -7.30696934357336 LTS-003 chr22 31688573 33259064 1570492 * c(RFPL3S, RFPL3, RFPL2, C22orf42, PATZ1, PISD, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, LOC339666, DRG1, RTCB, EIF4ENIF1, SLC5A1, SLC5A4, TIMP3, YWHAH, SYN3, DEPDC5, SFI1) 0.263374228991048 33 0.0667180436500116 1.162104060388 2003 0.335126297616528 3 2 1 -7.84975143896635 LTS-003 chr22 33259065 33668927 409863 * SYN3 NA 0 NA 1.26444783155599 58 0.222665620435432 3 NA NA -5.7898944399929 LTS-003 chr22 33668928 34022284 353357 * c(MIR4764, LARGE1) 0.405 1 NA 0.909583140647197 101 0.229150101699543 2 2 0 -5.77620721597064 LTS-003 chr22 34022285 36002886 1980602 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, RASD2, HMOX1, MB, MCM5, ISX, LARGE1) 0.390573687293497 14 0.0419984955251212 0.84228236186101 589 0.202709139853524 2 1 1 -7.78159149352526 LTS-003 chr22 36002887 41833116 5830230 * c(LOC100130899, MIR1281, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, APOBEC3A_B, DNAL4, CACNG2, TAB1, SLC25A17, DDX17, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, FAM83F, ELFN2, C1QTNF6, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, ENTHD1, DNAJB7, CHADL, ADSL, TMPRSS6, APOBEC3H, APOBEC3A, APOBEC3F, EP300, TNRC6B, ZC3H7B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, RBFOX2, SH3BP1, MAFF, APOL2, CBY1, SUN2, TXN2, TMEM184B, NA NA NA NA NA NA NA NA NA LTS-003 GGA1, SNORD43, CYTH4, APOBEC3C, SGSM3, MCHR1, CARD10, H1F0, TEX33, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MB, MFNG, MGAT3, MPST, MYH9, ATF4, NCF4, EIF3L, PDGFB, POLR2F, MIEF1, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SOX10, SSTR3, ST13, TEF, MIR658, MIR659, TST, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, L3MBTL2, PLA2G6, C22orf23, GALR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MICALL1, APOL1, EIF3D, CACNA1I, SYNGR1, RPS19BP1, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.39321849884258 132 0.0826665108980497 0.781516698526239 9310 0.190921378343216 2 1 1 -9.44828764432859 LTS-003 NA NA NA NA LTS-003 chr22 41833117 41864190 31074 * c(TOB2, PHF5A) 0.488 1 NA 0.812730252955107 33 0.151493361690747 2 2 0 -5.78689853511949 LTS-003 chr22 41864191 41895919 31729 * c(ACO2, PHF5A) 0.463 1 NA 0.871090137347262 21 0.145086033589926 2 2 0 -5.77296820312302 LTS-003 chr22 41895920 45075738 3179819 * c(NDUFA6-AS1, EFCAB6-AS1, PACSIN2, TNFRSF13C, MEI1, FAM109B, NFAM1, PNPLA5, CYP2D7, CYP2D6, WBP2NL, POLR3H, CYB5R3, TTLL12, SERHL2, XRCC6, TTLL1, SAMM50, SULT4A1, ARFGAP3, RNU12, ATP5L2, CSDC2, RRP7A, MCAT, DESI1, PARVB, LINC00634, OGFRP1, LINC00207, MIR33A, LINC00229, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, A4GALT, PRR5, SEPT3, BIK, PARVG, EFCAB6, SREBF2, TCF20, TSPO, MPPED1, CENPM, C22orf46, CCDC134, NA NA NA NA NA NA NA NA NA LTS-003 SCUBE1, PNPLA3, LDOC1L, POLDIP3, KIAA1644, SMDT1, RRP7BP, SERHL) 0.454664210681101 145 0.0459592710745193 0.98538117625737 3819 0.257138613766782 2 1 1 -6.86757216967675 LTS-003 NA NA NA NA LTS-003 chr22 45075739 45128232 52494 * c(PRR5-ARHGAP8, PRR5) 0.475 1 NA 0.954633382537045 33 0.33199426108585 2 2 0 -5.7644196347585 LTS-003 chr22 45128233 45198074 69842 * c(ARHGAP8, PRR5-ARHGAP8, PRR5) 0.470586173514998 3 0.0273922130054023 0.927574152603401 41 0.270935526936018 2 1 1 -7.63481145817151 LTS-003 chr22 45198075 50181561 4983487 * c(LINC01310, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, PKDREJ, NUP50, PHF21B, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, KIAA0930, BRD1, ARHGAP8, TBC1D22A, ATXN10, FAM19A5, RIBC2, SMC1B, LOC284933, C22orf34, MIRLET7BHG, LINC00898, MIRLET7A3, MIRLET7B, GTSE1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, TRMU, CERK, LOC730668, UPK3A, WNT7B, NA, CELSR1) 0.404101921911788 74 0.0700520301687709 0.783407597858681 3013 0.250976209067093 2 1 1 -8.35394165889915 LTS-003 chr22 50181562 50187711 6150 * BRD1 NA 0 NA 0.913 1 NA NA NA NA NA LTS-003 chr22 50187712 50523386 335675 * c(MLC1, BRD1, IL17REL, PIM3, ALG12, CRELD2, ZBED4) 0.451420977421927 42 0.0448169136501937 0.934252025681196 636 0.217990405192078 2 1 1 -6.82219679196113 LTS-003 chr22 50523387 50523417 31 * MLC1 0.479 1 NA 0.645 1 NA NA NA NA NA LTS-003 chr22 50523418 51183255 659838 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, NCAPH2, CHKB-CPT1B, ARSA, DENND6B, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, LMF2, PPP6R2, SCO2) 0.391280213997446 53 0.0813740266953134 0.778753509341674 2439 0.184884404485002 2 1 1 -7.36560842936077 LTS-003 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.700234442865619 69 0.256355202345927 1 NA NA -5.78104484723231 LTS-003 chrX 2699993 2715425 15433 * XG 0.402 1 NA 0.706321911446873 15 0.163468156211655 1 1 0 -5.78254542345288 LTS-003 chrX 2715426 9912932 7197507 * c(LINC01546, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.370448632325991 43 0.0773828911930209 0.795403160478482 1752 0.21679229989068 2 1 1 -9.32117254907757 LTS-003 chrX 9912933 10535705 622773 * c(CLDN34, CLCN4, SHROOM2, MID1, WWC3) 0.282579339571359 10 0.0481023214962992 1.0094943124934 597 0.231571059963503 3 2 1 -8.35396554940803 LTS-003 chrX 11130055 24577671 13447617 * c(GS1-600G8.3, SUPT20HL1, PHKA2-AS1, LINC01203, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, MSL3, CA5B, BEND2, PTCHD1, ASB11, ASB9, ZNF645, MOSPD2, DDX53, SUPT20HL2, TCEANC, FAM9C, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, EGFL6, AMELX, GLRA2, GPM6B, GRPR, SH3KBP1, HCCS, CA5BP1, TLR8-AS1, MAP3K15, ARHGAP6, YY2, NA NA NA NA NA NA NA NA NA LTS-003 NHS, TLR7, TLR8, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, PPEF1, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, TRAPPC2, MAGEB17, BMX, SMS, CDKL5, TMSB4X, LOC729609, ZFX, APOO, S100G, KLHL15, ZRSR2, OFD1, PIR, INE2, AP1S2, REPS2, ATXN3L, RAB9A, SYAP1, PCYT1B, FRMPD4) 0.362122388782586 83 0.0888323130472042 0.779740965609856 7821 0.219681745706399 2 1 1 -10.7891675374108 LTS-003 NA NA NA NA LTS-003 chrX 24577672 37300419 12722748 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, FAM47A, MAGEB6, FAM47B, NA, ARX, DMD, NR0B1, TAB3, GK, CFAP47, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, POLA1, PRRG1, NA, SCARNA23, CXorf21, TMEM47, PCYT1B) 0.37141433466498 40 0.103051863342986 0.842512865263844 2378 0.225941884356392 2 1 1 -8.79676823548012 LTS-003 chrX 37300420 37300425 6 * PRRG1 NA 0 NA 1.007 1 NA NA NA NA NA LTS-003 chrX 37300426 39935788 2635363 * c(CYBB, HYPM, LINC01281, LANCL3, OTC, BCOR, PRRG1, MID1IP1, RPGR, DYNLT3, TSPAN7, XK, SRPX, SYTL5) 0.37107812337941 5 0.204693673571022 1.01537662721271 1176 0.265267061151754 2 1 1 -6.85924513192551 LTS-003 chrX 39935789 39936156 368 * BCOR NA 0 NA 0.603 1 NA NA NA NA NA LTS-003 chrX 39936157 46539234 6603078 * c(LOC100132831, ATP6AP2, FUNDC1, CXorf38, DDX3X, GPR82, GPR34, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, BCOR, KRBOX4, CHST7, NYX, DUSP21, ZNF674, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, SLC9A7, CASK, MED14) 0.366356017496114 11 0.133094293300242 0.792777476605297 2257 0.184796004619911 2 1 1 -9.5355584258688 LTS-003 chrX 46539235 46539253 19 * SLC9A7 NA 0 NA 0.861 1 NA NA NA NA NA LTS-003 chrX 46539254 57621909 11082656 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MTRNR2L10, MIR4769, MIR4536-1, HUWE1, PQBP1, SSX3, TIMM17B, RRAGB, EBP, MAGED2, PIM2, WDR45, PRAF2, KLF8, CLCN5, DGKK, FOXR2, PAGE3, USP27X-AS1, FAAH2, ZXDB, RIBC1, USP51, SPIN3, XAGE3, XAGE5, NUDT10, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, APEX2, PCSK1N, SSX6, SSX7, SSX8, SSX9, NA NA NA NA NA NA NA NA NA LTS-003 CCDC22, MAGEH1, UBQLN2, HSD17B10, ERAS, ZNF81, ITIH6, ARAF, KCND1, SPACA5, USP27X, PAGE2B, CXXC1P1, GLOD5, PRICKLE3, MIRLET7F2, MIR188, MIR98, UQCRBP1, SPIN2B, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PFKFB1, PLP2, GPR173, SPIN2A, NDUFB11, GNL3L, FAM120C, LINC01420, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, RP2, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, WNK3, XAGE1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 SSX1, SSX5, SNORA11, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, SMC1A, UXT, SLC9A7, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.341483843978012 83 0.0950822277416996 0.835639395113692 9252 0.199428055532311 2 1 1 -9.44682200237109 LTS-003 NA NA NA NA LTS-003 chrX 57621910 57937169 315260 * c(ZXDB, ZXDA) NA 0 NA 0.821889604571662 139 0.181702497855797 2 NA NA -5.8998193409158 LTS-003 chrX 61999880 65244971 3245092 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278) 0.438 1 NA 0.842973288235904 1004 0.174277832228321 2 2 0 -6.69128361846317 LTS-003 chrX 65244972 74742736 9497765 * c(MIR374B, FTX, MIR374C, MIR676, CDX4, VSIG4, MAP2K4P1, OTUD6A, UPRT, CXorf65, AWAT1, AWAT2, ZDHHC15, DLG3, EDA, EFNB1, ABCB7, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, MIR374A, CITED1, NAP1L2, NONO, OPHN1, P2RY4, RLIM, PDZD11, PHKA1, PIN4, CHIC1, NLGN3, ERCC6L, NA NA NA NA NA NA NA NA NA LTS-003 GDPD2, JPX, HDAC8, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, OGT, SLC7A3, ZMYM3, TSIX, ACRC, STARD8, HEPH, MED12) 0.384275556693814 32 0.0539211547300255 0.829673221134457 6060 0.191176859915569 2 1 1 -9.44842055998051 LTS-003 NA NA NA NA LTS-003 chrX 74742737 75651791 909055 * c(MAGEE2, ZDHHC15, TTC3P1, PBDC1, MAGEE1) NA 0 NA 1.18075292814004 203 0.219743973613438 3 NA NA -5.97894390422831 LTS-003 chrX 75651792 76139640 487849 * character(0) NA 0 NA 1.712 1 NA NA NA NA NA LTS-003 chrX 76139641 76954410 814770 * c(MIR384, ATRX, FGF16) NA 0 NA 2.02438424103433 331 0.421572051882158 5 NA NA -5.7752312761703 LTS-003 chrX 76954411 76972580 18170 * ATRX NA 0 NA 1.14 1 NA NA NA NA NA LTS-003 chrX 76972581 79990771 3018191 * c(MIR4328, CYSLTR1, COX7B, FAM46D, ZCCHC5, BRWD3, P2RY10, LPAR4, PGAM4, TBX22, TAF9B, PGK1, ATP7A, ATRX, MAGT1, GPR174, ITM2A) 0.356020117495178 13 0.161795930347222 1.60701166460751 1245 0.441872952629573 4 2 2 -6.94342532135068 LTS-003 chrX 79990772 79991466 695 * BRWD3 NA 0 NA 0.916 1 NA NA NA NA NA LTS-003 chrX 79991467 80554066 562600 * c(BRWD3, SH3BGRL, HMGN5) 0.417 1 NA 1.31268676874274 138 0.314178182889966 3 3 0 -5.76845225180208 LTS-003 chrX 80554067 80937798 383732 * character(0) NA 0 NA 1.157 1 NA NA NA NA NA LTS-003 chrX 80937799 85090882 4153084 * c(UBE2DNL, APOOL, HDX, CYLC1, RPS6KA6, SATL1, POU3F4, ZNF711, POF1B) 0.416165142438349 6 0.193326321711935 1.05801190007355 712 0.214136958852517 2 1 1 -7.21093388209612 LTS-003 chrX 85090883 86924883 1834001 * c(CHM, DACH2, KLHL4) 0.288552589960493 11 0.107037461581533 1.51785439338132 516 0.466185472866501 4 3 1 -6.85183086329084 LTS-003 chrX 88008310 91877948 3869639 * c(PABPC5, PCDH11X, CPXCR1, TGIF2LX) 0.400651345969924 9 0.0667366299552036 0.871400990148241 401 0.219626160353726 2 1 1 -7.3038091396538 LTS-003 chrX 91877949 96502838 4624890 * c(DIAPH2, PCDH11X, FAM133A, RPA4, NAP1L3, BRDTP1) NA 0 NA 0.980966497290471 301 0.286313081314077 2 NA NA -5.77993751887092 LTS-003 chrX 96502839 96603063 100225 * DIAPH2 NA 0 NA 0.665 1 NA NA NA NA NA LTS-003 chrX 96603064 101097890 4494827 * c(ARMCX4, RPL36A-HNRNPH2, CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, HNRNPH2, ARL13A, XKRX, XRCC6P5, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, PCDH19, TMEM35A, RPL36A, TNMD, BTK, TSPAN6, TRMT2B, SYTL4, ARMCX2) 0.222 1 NA 0.667327088154758 2125 0.145237306890236 1 1 0 -8.21798329991435 LTS-003 chrX 101097891 101439808 341918 * c(TCEAL2, TCEAL6, BEX5, NXF5, ZMAT1) 0.215649288551475 3 0.0390512483795333 0.701247037726735 140 0.150695457170818 1 1 0 -8.6470704797205 LTS-003 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.069 1 NA NA NA NA NA LTS-003 chrX 101472923 101624980 152058 * character(0) NA 0 NA 0.181569688824614 40 0.254974790106284 0 NA NA -5.78028601867626 LTS-003 chrX 101624981 114540936 12915956 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, GLRA4, PAK3, TCEAL9, NA NA NA NA NA NA NA NA NA LTS-003 RAB9B, LUZP4, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.260338550675026 42 0.051560795954315 0.662715279758461 6368 0.161611915416719 1 1 0 -12.7342766356483 LTS-003 NA NA NA NA LTS-003 chrX 114540937 114541027 91 * LUZP4 0.236 1 NA 1.373 1 NA NA NA NA NA LTS-003 chrX 114541028 118588464 4047437 * c(MIR1277, PGRMC1, SLC6A14, DOCK11, ZCCHC12, AGTR2, CT83, SLC25A43, IL13RA1, LUZP4, PLS3, WDR44, KIAA1210, LONRF3, KLHL13) 0.189845033253321 25 0.0360879481267639 0.746193565324588 1516 0.218172334436608 1 1 0 -10.1209134159234 LTS-003 chrX 118588465 118602100 13636 * SLC25A5-AS1 NA 0 NA 1.331 1 NA NA NA NA NA LTS-003 chrX 118602101 123787671 5185571 * c(ZBTB33, SLC25A5-AS1, TENM1, STAG2, AKAP14, RHOXF1, NKAPP1, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, SOWAHD, LAMP2, SH2D1A, NDUFA1, TMEM255A, NKRF, THOC2, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, CUL4B) 0.11464928798743 25 0.0505794095128311 1.15232083769992 2454 0.320649961203542 2 2 0 -7.80031297314291 LTS-003 chrX 123787672 123805535 17864 * TENM1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-003 chrX 123805536 140993801 17188266 * c(MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR320D2, LINC00629, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, PLAC1, UTP14A, MAGEC3, DCAF12L1, ADGRG4, ACTRT1, GPR119, LINC00889, ARHGAP36, FAM122B, FAM122C, NA, NA, ELF4, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, LDOC1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, ATP11C, LINC00632, FIRRE, HPRT1, DCAF12L2, OR13H1, CCDC160, CXorf66, IGSF1, LOC389895, NA NA NA NA NA NA NA NA NA LTS-003 SMIM10L2A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, RAP2C, SPANXA2-OT1, BCORL1, SMIM10, SMIM10L2B, SPANXC, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, XPNPEP2, ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-003 MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.201331170420944 42 0.0805838307272656 0.746008415703639 6141 0.197319229370803 1 1 0 -13.2890671584272 LTS-003 NA NA NA NA LTS-003 chrX 140993802 140993900 99 * MAGEC1 NA 0 NA 1.266 1 NA NA NA NA NA LTS-003 chrX 140993901 140995319 1419 * MAGEC1 0.301133907823636 3 0.115052162083118 1.44910026921904 39 1.63921101335026 7 5 2 -6.73378154014464 LTS-003 chrX 140995320 140995418 99 * MAGEC1 NA 0 NA 0.889 1 NA NA NA NA NA LTS-003 chrX 140995419 146354026 5358608 * c(MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR514B, SLITRK4, SPANXN3, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, SLITRK2, TMEM257, MAGEC1) 0.19061278523069 14 0.0661434089645412 0.815448088209164 656 0.257228875504874 2 2 0 -9.04601474265738 LTS-003 chrX 146354027 147582744 1228718 * c(FMR1-AS1, FMR1NB, FMR1, AFF2, MIR514A1, MIR514A2) NA 0 NA 0.742392085446466 183 0.169392174439034 2 NA NA -7.11116764166727 LTS-003 chrX 147582745 147719591 136847 * AFF2 NA 0 NA 1.298 1 NA NA NA NA NA LTS-003 chrX 147719592 148072763 353172 * AFF2 0.352 1 NA 1.00865499412156 143 0.248839954308464 2 2 0 -5.7727092529986 LTS-003 chrX 148072764 153762634 5689871 * c(CSAG4, LINC00893, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, AFF2, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, NA NA NA NA NA NA NA NA NA LTS-003 MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, MTMR1, FATE1, FAM50A, CXorf40A, FAM58A, GPR50) 0.348511976243736 77 0.0746882516077975 0.94702274144379 6372 0.237058486298597 2 1 1 -7.44750349422341 LTS-003 NA NA NA NA LTS-003 chrX 153762635 154774986 1012352 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, TMLHE, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, IKBKG) NA 0 NA 0.896237938758653 1147 0.627977360820983 2 NA NA -5.77171050656517 LTS-003 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.763346037852665 27 0.254990285273862 2 NA NA -6.07954174568129 LTS-003 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.568622365508589 19 0.612060769830016 1 NA NA -5.76630018007944 LTS-003 chr1 65893 762320 696428 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.127 1 NA 1.34987472894233 25 0.532338667266118 5 5 0 -5.76686090740654 LTS-004 chr1 762321 792446 30126 * c(LINC01128, LINC00115) NA 0 NA 1.30978059879328 21 0.300399670280714 5 NA NA -5.76443274564143 LTS-004 chr1 792447 861264 68818 * c(LOC100130417, SAMD11, FAM41C, LINC01128) NA 0 NA 0.804 1 NA NA NA NA NA LTS-004 chr1 861265 1567616 706352 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15) 0.258451335799931 91 0.0676659773688705 0.727329123084088 2783 0.22774971364234 2 2 0 -6.79977249470947 LTS-004 chr1 1567617 1569873 2257 * MMP23B NA 0 NA 0.881 1 NA NA NA NA NA LTS-004 chr1 1569874 1593768 23895 * c(SLC35E2B, MMP23B, CDK11B) 0.319805519788974 8 0.105075398099242 0.916094794596397 135 0.319532159563048 4 3 1 -6.77177716644385 LTS-004 chr1 1593769 1593784 16 * c(SLC35E2B, CDK11B) NA 0 NA 1.109 1 NA NA NA NA NA LTS-004 chr1 1593785 1594498 714 * c(SLC35E2B, CDK11B) 0.323 1 NA 1.56424897201831 17 0.364304827518029 7 7 0 -5.76441812477905 LTS-004 chr1 1594499 1597382 2884 * c(SLC35E2B, CDK11B) NA 0 NA 1.21694488761222 58 0.264106857052072 5 NA NA -5.76450822148747 LTS-004 chr1 1597383 1599812 2430 * c(SLC35E2B, CDK11B) 0.5 1 NA 0.771395441508399 3 0.208624063808565 2 2 0 -5.76441043117684 LTS-004 chr1 1599813 1636501 36689 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.378725815221503 7 0.0652883713119835 0.78391972173559 93 0.240317137941136 3 2 1 -6.8354970012636 LTS-004 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.373 1 NA NA NA NA NA LTS-004 chr1 1637054 1650967 13914 * c(CDK11A, SLC35E2B, CDK11B) 0.453131322554715 12 0.0546134487821341 0.540577136716954 72 0.27736549525445 0 0 0 -6.78203860630335 LTS-004 chr1 1650968 1658945 7978 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.164 1 NA 0.662263392913077 29 0.156647693886632 1 1 0 -5.76633583902296 LTS-004 chr1 1658946 1661828 2883 * c(SLC35E2B, SLC35E2) 0.368020412633537 5 0.111305884839931 0.506951305635395 55 0.235676391724249 1 1 0 -6.74293961572243 LTS-004 chr1 1661829 1661844 16 * c(SLC35E2B, SLC35E2) 0.197 1 NA 0.914 1 NA NA NA NA NA LTS-004 chr1 1661845 16384868 14723024 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, RER1, PARK7, CTRC, ACOT7, FHAD1, LOC115110, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, C1orf64, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, TMEM51-AS1, ENO1, CLSTN1, SPEN, NA NA NA NA NA NA NA NA NA LTS-004 KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, HSPB7, ARHGEF16, GNB1, LOC284661, SLC25A34, UBIAD1, ZBTB48, C1orf174, TMEM52, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, TMEM82, HES3, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, LINC00982, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NPPB, WRAP73, SLC45A1, CELA2B, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, FBLIM1, CASZ1, TMEM51, VPS13D, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, RSC1A1, CELA2A, PRDM16, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, SKI, PRAMEF1, PRAMEF2, SLC2A5, NADK, PRAMEF22, NA, SRM, SNORA59B, MIR551A, TNFRSF1B, TP73, SLC35E2B, LINC01346, FLJ37453, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CA6, ZBTB17, PRDM2, EFHD2, MMEL1, NOL9, AGMAT, MORN1, GPR157, SPSB1, TAS1R1, ESPN, CASP9, SLC25A33, DDI2, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, SLC35E2, MFN2) 0.275897095501833 329 0.0672016503489509 0.748361131095745 14824 0.245017462471418 2 2 0 -6.89194230253473 LTS-004 NA NA NA NA LTS-004 chr1 16384869 16385178 310 * FAM131C 0.41 1 NA 0.763981494918016 5 0.232262782210151 2 2 0 -5.76441068316814 LTS-004 chr1 16385179 16802550 417372 * c(CROCCP3, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.316305915784628 3 0.0546900356555012 0.742635576470985 696 0.141327675222076 2 2 0 -7.07801814795301 LTS-004 chr1 16802551 16802964 414 * CROCCP3 NA 0 NA 0.423 1 NA NA NA NA NA LTS-004 chr1 16802965 16975831 172867 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.357088324527635 21 0.0601925877417446 0.481488442174998 97 0.159437267500548 1 1 0 -6.92451657488528 LTS-004 chr1 16975832 16975852 21 * MST1P2 NA 0 NA 0.331 1 NA NA NA NA NA LTS-004 chr1 16975853 16978916 3064 * MST1P2 0.391990736242343 9 0.103688234626692 0.273337133004516 73 0.190520874386154 3 2 1 -6.81837569428438 LTS-004 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.271 1 NA NA NA NA NA LTS-004 chr1 17009684 17012093 2410 * character(0) 0.458128822071409 5 0.0226229971489191 1.58181225751606 60 0.499080887152477 6 3 3 -7.15411408124219 LTS-004 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.635 1 NA NA NA NA NA LTS-004 chr1 17017583 17083128 65546 * c(MST1L, ESPNP, CROCC) 0.33510375753885 15 0.11459236241482 0.798645231787116 113 0.325216061847645 4 3 1 -6.77970571827571 LTS-004 chr1 17083129 17198532 115404 * c(MST1L, CROCC) 0.297959812189755 21 0.0784287058720333 0.608975615803832 123 0.176448231525954 2 2 0 -6.90881514979383 LTS-004 chr1 17198533 17273444 74912 * CROCC 0.420731433516839 8 0.0673307401669443 1.34359348618933 76 0.385898201966143 5 3 2 -6.73388645050441 LTS-004 chr1 17273445 17273493 49 * CROCC 0.317 1 NA 1.027 1 NA NA NA NA NA LTS-004 chr1 17273494 17274945 1452 * CROCC NA 0 NA 1.46890123993878 5 0.296024830039644 6 NA NA -5.76441014040335 LTS-004 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.53 1 NA NA NA NA NA LTS-004 chr1 17275408 25586803 8311396 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, ATP13A2, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, PADI1, NA NA NA NA NA NA NA NA NA LTS-004 PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, NCMAP, LDLRAD2, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, SDHB, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 USP48, NBPF3, IGSF21, AKR7A2, RUNX3, ALDH4A1, EIF4G3, STPG1, CROCC, CDA, ZBTB40, CDC42) 0.273199835914981 259 0.0639085971565492 0.761885609502034 10201 0.198213941161175 2 2 0 -6.76338585982619 LTS-004 NA NA NA NA LTS-004 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 0.353 1 NA NA NA NA NA LTS-004 chr1 25598904 25656954 58051 * c(RSRP1, RHD) 0.248 1 NA 0.378359440474037 80 0.160349025960815 0 0 0 -5.78305296065059 LTS-004 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.813 1 NA NA NA NA NA LTS-004 chr1 25666924 40230559 14563636 * c(FAM229A, MATN1-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, CNKSR1, CD52, PPIE, KHDRBS1, GMEB1, NUDC, SF3A3, RCC1, SMIM12, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, PAQR7, PHC2, AGO3, AGO4, FAM76A, TXLNA, EPB41, NA NA NA NA NA NA NA NA NA LTS-004 AK2, EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, WDTC1, NCDN, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, GRIK3, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, SERINC2, BMP8A, INPP5B, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MATN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MTF1, NDUFS5, OPRD1, PAFAH2, ZNF593, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TMEM57, TRIM62, PEF1, PIGV, MAP7D1, IQCC, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, CLSPN, RRAGC, TINAGL1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 S100PBP, MEAF6, CEP85, MRPS15, MARCKSL1, ZBTB8A, LOC653160, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, LINC01137, PPIEL, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, CCDC28B, NKAIN1, AKIRIN1, YRDC, LIN28A, SH3D21, SNIP1, ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, ZDHHC18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NR0B2, NT5C1A, TRIM63, FAM167B, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, THRAP3) 0.272812221718293 293 0.0702353423816192 0.751052974683927 17383 0.191566223659698 2 2 0 -6.9366358520657 LTS-004 NA NA NA NA LTS-004 chr1 40230560 40235148 4589 * BMP8B NA 0 NA 0.208 1 NA NA NA NA NA LTS-004 chr1 40235149 40254437 19289 * c(OXCT2, BMP8B) 0.383584224344549 7 0.0628475100844061 0.404968757999046 43 0.145820593969755 1 1 0 -6.94278120243475 LTS-004 chr1 40254438 59042181 18787744 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR761, SLFNL1-AS1, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR5584, LINC00853, TSPAN1, PDZK1IP1, ZMPSTE24, CDKN2C, AKR1A1, TESK2, PPIH, CAP1, LRRC41, EBNA1BP2, KIF2C, FAF1, MED8, KTI12, TOE1, ERMAP, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, DMBX1, TMCO2, ZNF684, TCEANC2, PODN, KLF17, TMEM125, COL9A2, CPT2, KNCN, MOB3C, GLIS1, CLDN19, NA NA NA NA NA NA NA NA NA LTS-004 CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, DAB1, CYP4Z2P, CITED4, SLC25A3P1, LEXM, DHCR24, DIO1, DPH2, EDN2, ELAVL4, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, SLFNL1, EPS15, FAAH, FOXJ3, SCMH1, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, SZT2, USP24, SSBP3, PCSK9, PARS2, MMACHC, ACOT11, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, RIMKLA, GPX7, GUCA2A, GUCA2B, FAM151A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 C1orf228, ZFP69, TCTEX1D4, FAM159A, IPP, SVBP, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LINC01144, TACSTD2, MIR30C1, MIR30E, MAGOH, MPL, SLC2A1-AS1, FAM183A, ZYG11A, MUTYH, MYCL, NASP, NFYC, NRDC, YBX1, ORC1, PRDX1, ZNF691, TXNDC12, TMEM69, MRPL37, HSPB11, CMPK1, ATP6V0B, LURAP1, YIPF1, SPATA6, TRIT1, C1orf123, TTC22, RNF220, ECHDC2, PPT1, POMGNT1, PRKAA2, NDC1, DMAP1, ZSWIM5, PTPRF, RAB3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 HIVEP3, RLF, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, P3H1, SMAP2, ATPAF1, EXO5, ELOVL1, ST3GAL3, STIL, SLC1A7, SLC2A1, ZFP69B, COA7, SLC6A9, BMP8B, TAL1, TIE1, TTC4, CCDC30, RPS15AP10, FAAHP1, C8A, C8B, UQCRH, UROD, LRP8, BSND, ERI3, C1orf50, TMEM53, HECTD3, BEND5, ZYG11B, PPCS, HYI, ZMYND12, RAD54L, FOXD2-AS1, HPDL, AGBL4, MFSD2A, PRPF38A, PIK3R3, MKNK1, PLPP3, PTCH2, B4GALT2, EIF2B3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ARTN, KCNQ4, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, TMEM59, IPO13, KDM4A, RIMS3, EFCAB14, CDC20) 0.263255707655142 290 0.0663407417071991 0.766441938850811 16992 0.199562043427754 2 2 0 -6.77679654731317 LTS-004 NA NA NA NA LTS-004 chr1 59042182 59096045 53864 * TACSTD2 0.37 1 NA 0.805700253276586 23 0.578956260678349 2 2 0 -5.76456854934912 LTS-004 chr1 59096046 59096250 205 * character(0) 0.458428618928901 9 0.0252245471273079 1.4559708025064 13 1.08299527664287 6 3 3 -7.08618962256029 LTS-004 chr1 59096251 59121036 24786 * MYSM1 0.264 1 NA 0.742641692170605 15 0.186972445130547 2 2 0 -5.76512384581363 LTS-004 chr1 59121037 68942433 9821397 * c(LINC01135, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, MIR4711, PATJ, MYSM1, C1orf87, UBE2U, IL23R, CYP2J2, KANK4, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, JUN, LEPR, C1orf141, MIR101-1, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, L1TD1, LEPROT, RAVER2, FGGY, DEPDC1, GNG12, CACHD1, MIER1, RPE65, HSD52, USP1, DLEU2L, WDR78, WLS, TM2D1, NA NA NA NA NA NA NA NA NA LTS-004 SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, DNAJC6) 0.26626308153423 91 0.0636609858808448 0.784811210358756 5370 0.211977222013698 2 2 0 -6.77089850039695 LTS-004 NA NA NA NA LTS-004 chr1 68942434 68963005 20572 * DEPDC1 NA 0 NA 0.785508000542557 95 0.284317385701033 2 NA NA -5.76444519644734 LTS-004 chr1 70034127 70225923 191797 * LRRC7 0.392 1 NA 1.11535746668213 17 0.207355211710556 4 4 0 -5.76450048880184 LTS-004 chr1 70225924 89418841 19192918 * c(ZRANB2-AS1, PIGK, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, GTF2B, LINC01140, ACADM, CYR61, MIGA1, UOX, MIR186, LHX8, LINC01555, MSH4, NA NA NA NA NA NA NA NA NA LTS-004 TNNI3K, SH3GLB1, PIN1P1, ZNHIT6, GIPC2, MCOLN3, LRRC40, PRKACB, PKN2, KYAT3, PTGER3, PTGFR, ODF2L, LRRC7, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, LMO4, FPGT, FUBP1, BCL10, NEXN, SRSF11, SELENOF, ZRANB2, CLCA3P, CLCA2, HS2ST1) 0.449937953859166 97 0.0393074169089624 1.05493465376507 7454 0.288354873296454 4 2 2 -7.26637263567751 LTS-004 NA NA NA NA LTS-004 chr1 89418842 89420723 1882 * KYAT3 NA 0 NA 0.709 1 NA NA NA NA NA LTS-004 chr1 89420724 93827057 4406334 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.407983095864981 24 0.123490824337892 0.971959411124785 3141 0.232193641351602 3 2 1 -6.76461714755494 LTS-004 chr1 93827058 93827199 142 * DR1 NA 0 NA 1.077 1 NA NA NA NA NA LTS-004 chr1 93827200 117118634 23291435 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, MAB21L3, SLC44A3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, NA NA NA NA NA NA NA NA NA LTS-004 FNDC7, SASS6, UBL4B, AGL, DPYD, DR1, S1PR1, CELSR2, ALG14, HIPK1, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, DNTTIP2, IGSF3, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, PALMD, FNBP1L, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, PTBP2, ABCD3, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SYCP1, TAF13, MIR553, TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, BCAR3, PROK1, CASQ2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, RTCA, SLC16A4, ARHGAP29, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.448779275373349 189 0.065045388944857 1.06339305901084 13988 0.302776508749313 4 2 2 -7.15566109152669 LTS-004 NA NA NA NA LTS-004 chr1 117118635 117142641 24007 * IGSF3 0.344 1 NA 1.05183518678791 70 0.152228321624992 4 4 0 -5.76699074784506 LTS-004 chr1 117142642 117156490 13849 * IGSF3 0.257097522189749 10 0.0285480102439538 1.00825430566415 42 0.269253112657882 6 5 1 -6.77631986351612 LTS-004 chr1 117156491 117209424 52934 * IGSF3 0.482 1 NA 1.04100562066412 23 0.204507593333904 4 4 0 -5.76865566531616 LTS-004 chr1 117209425 120345229 3135805 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HAO2, GDAP2, FAM46C, PTGFRN, LINC00622, TBX15, VTCN1, TRIM45, REG4, TTF2, ZNF697, CD2, CD101) 0.460814668163448 34 0.0329475897754944 1.0636015476425 2136 0.389490451823056 4 2 2 -7.03158022797556 LTS-004 chr1 120345230 120535418 190189 * c(ADAM30, NBPF7, NOTCH2, REG4) 0.33 1 NA 1.01992135706593 401 0.219742194219043 3 3 0 -5.7771025029468 LTS-004 chr1 120535419 120927095 391677 * c(FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.309893727143448 16 0.060917293658424 1.05114564498217 171 1.33692050378343 5 4 1 -6.75977205140228 LTS-004 chr1 120927096 121313547 386452 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 1.06415777025304 79 0.263323219909411 4 NA NA -5.77371879248086 LTS-004 chr1 143912360 144013853 101494 * FAM72D 0.26 1 NA 0.790787710668811 5 0.364639548047109 2 2 0 -5.76462883535111 LTS-004 chr1 144013854 145018023 1004170 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.440766624632653 48 0.0679320556467796 0.951253714713419 472 0.286139792561646 3 2 1 -6.90370384213245 LTS-004 chr1 145018024 145021089 3066 * c(NBPF20, LOC653513, PDE4DIP) 0.25 1 NA 1.04868992607796 3 0.476374152671336 4 4 0 -5.76444699532884 LTS-004 chr1 145021090 145827086 805997 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, LOC653513, GPR89A, POLR3GL, ITGA10, PEX11B, SEC22B, PDE4DIP, RBM8A) 0.318898359857823 43 0.102772334915191 1.00495438195276 1502 0.417385018132535 4 3 1 -6.80349509926358 LTS-004 chr1 145827087 146310605 483519 * c(NBPF10, NBPF20, GPR89A, NA, NA, NA) NA 0 NA 1.849 1 NA NA NA NA NA LTS-004 chr1 146310606 152760544 6449939 * c(C1orf68, LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, LCE4A, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, CA14, LCE5A, NBPF14, LCE2B, GJA5, GJA8, RIIAD1, THEM5, NBPF15, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, NA NA NA NA NA NA NA NA NA LTS-004 LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, KPRP, CRNN, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, HIST2H3D, MIR554, VPS72, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TCHH, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, LCE3D, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A) 0.368927534969331 64 0.0588691357912576 1.2312734098741 7069 0.285289623546917 4 3 1 -7.22039676010359 LTS-004 NA NA NA NA LTS-004 chr1 152760545 152777462 16918 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.39226091944012 42 1.14699167623075 11 NA NA -5.76441383707211 LTS-004 chr1 152777463 158687163 5909701 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, NA NA NA NA NA NA NA NA NA LTS-004 CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, S100A7A, RXFP4, OR10R2, LCE1A, LCE1B, LCE1C, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, C1orf189, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, KIRREL, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPTA1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, OR6K2, ISG20L2, FCRL5, FCRL4, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, CD1A, CD1B, CD1C, NUP210L, CD1D, CD1E, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.339078922822278 188 0.0651897027831768 1.24685220423838 12140 0.335610582666333 5 4 1 -7.00371825248508 LTS-004 NA NA NA NA LTS-004 chr1 158687164 158687224 61 * OR6K3 0.306 1 NA 4.803 1 NA NA NA NA NA LTS-004 chr1 158687225 159032316 345092 * c(OR6K6, OR6N1, PYHIN1, IFI16, OR6K3, MNDA, OR6N2, AIM2) 0.201165582191221 7 0.0151924166546841 1.23658274028457 291 0.584683400483378 9 8 1 -6.99131861862544 LTS-004 chr1 159032317 159170904 138588 * c(CADM3-AS1, CADM3, AIM2) 0.268234088325719 2 0.333047293938864 1.06038863109891 109 0.22272271035631 3 3 0 -6.76440789016613 LTS-004 chr1 159170905 159170986 82 * c(CADM3-AS1, CADM3) 0.471 1 NA 1.71074928624045 2 0.758725576213165 7 7 0 -5.76441026796626 LTS-004 chr1 159170987 161561445 2390459 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, COPA, CRP, ITLN2, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, FCRL6, KCNJ9, KCNJ10, VSIG8, LY9, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, NA NA NA NA NA NA NA NA NA LTS-004 SLAMF1, PCP4L1, USF1, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, ADAMTS4, CD48, NR1I3) 0.446263507135683 84 0.043522817658251 1.07360218487991 4609 0.633350636736425 4 2 2 -6.75900053099438 LTS-004 NA NA NA NA LTS-004 chr1 161561446 161570590 9145 * FCGR2C NA 0 NA 0.704776607899915 44 0.156995273356356 2 NA NA -5.7663470060409 LTS-004 chr1 161570591 176661449 15090859 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, LOC100506023, GAS5-AS1, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, RC3H1, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, NA NA NA NA NA NA NA NA NA LTS-004 C1orf111, LINC01142, NME7, HSPA7, ANKRD45, CCDC190, FASLG, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, SERPINC1, MYOC, ATP1B1, DDR2, PBX1, SUCO, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, DARS2, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, GAS5, PAPPA2, SNORD74, RXRG, XCL1, TNN, MRPS14, SELE, SELL, SELP, RPL31P11, RFWD2, UAP1, SCARNA3, XCL2, SNORD75, SNORD76, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SNORD77, SNORD78, MIR556, MIR557, TNR, TOP1P1, TNFSF4, LOC730159, UCK2, LINC00626, MROH9, NUF2, ZBTB37, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, TNFSF18, MPZL1, TBX19, FCGR2C, CENPL, CD247, DUSP27, RCSD1, METTL18, GORAB, C1orf105, GPR52, PRDX6, KIAA0040, NOS1AP, RABGAP1L) 0.453891908796303 181 0.0574967818780771 1.09233083106479 9503 0.655305028453128 4 2 2 -6.79072570370973 LTS-004 NA NA NA NA LTS-004 chr1 176661450 176664805 3356 * PAPPA2 NA 0 NA 1.242 1 NA NA NA NA NA LTS-004 chr1 176664806 179063432 2398627 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TOR3A, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, FAM20B) 0.453716092214898 30 0.0343015029327911 1.19466936995517 1455 0.278042814947186 4 2 2 -6.92167258218476 LTS-004 chr1 179063433 179064042 610 * TOR3A NA 0 NA 0.928 1 NA NA NA NA NA LTS-004 chr1 179064043 211749370 32685328 * c(MIR181A1HG, GM140, GS1-279B7.1, MIR1231, MIR1278, MIR548F1, ZBED6, MIR4260, MIR3121, PCAT6, LHX4-AS1, MIR4735, MIR5191, RNU6-72P, ARPC5, PRG4, STX6, TIMM17A, LRRN2, IVNS1ABP, KDM5B, CFHR4, CFHR3, OCLM, IL24, CHI3L1, CHIT1, SLC26A9, TSEN15, FAM129A, AXDND1, ATP6V1G3, ZNF648, TEDDM1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, FAM163A, MFSD4A, NA NA NA NA NA NA NA NA NA LTS-004 PM20D1, SHISA4, CTSE, CD55, DENND1B, TDRD5, TOR1AIP2, DHX9, EIF2D, ELF3, FLJ23867, ELK4, F13B, PLEKHA6, KIF21B, NMNAT2, NFASC, COLGALT2, RGL1, CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, ASPM, TOR1AIP1, OPTC, ABL2, DIEXF, GLUL, LINC00303, LEMD1-AS1, LOC284578, LOC284581, LOC284648, SMG7-AS1, GPR25, UBE2T, IL19, CFH, CFHR1, CFHR2, MR1, HSD11B1, BRINP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RD3, KCNT2, RGSL1, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KISS1, LINC00272, C1orf53, TMEM81, LAD1, LAMB3, LAMC1, LAMC2, NA, APOBEC4, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, RGS21, LOC440704, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, NCF2, ATP2B4, G0S2, IL20, GLRX2, ADIPOR1, IER5, CDK18, PDC, UCHL5, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLA2G4A, PLXNA2, SWT1, LAX1, C1orf27, KLHDC8A, ETNK2, AVPR1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LINC00862, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, LHX9, CAMK1G, SERTAD4-AS1, PTGS2, QSOX1, KIAA1614, PTPN7, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RNPEP, MGAT4EP, TOR3A, MIR205HG, RGS18, NUCKS1, ASCL5, SRGAP2C, SNRPE, SOAT1, TROVE2, SNORA77, CNTN2, TNNI1, TNNT2, TPR, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1E, SLC30A1, CACNA1S, NPHS2, BTG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 C1orf116, CDC73, EDEM3, TRAF3IP3, NPL, CFHR5, C1orf21, SHCBP1L, TRMT1L, NUAK2, DDX59, RASSF5, HMCN1, FCAMR, ACBD6, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, RGS8, SLC45A3, B3GALT2, RAB29, NAV1, LHX4, IGFN1, XPR1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, CEP350, ZC3H11A, SMG7, TMCC2, KIF14) 0.450951781024313 446 0.0680102858930359 1.0968622185762 23942 0.262481963885766 4 2 2 -6.89423431634548 LTS-004 NA NA NA NA LTS-004 chr1 211749371 214551518 2802148 * c(MIR3122, LINC00538, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.440703695665948 25 0.131715514145702 1.0457656358441 1705 0.283077346495827 4 2 2 -6.83495587396419 LTS-004 chr1 214551519 214556642 5124 * PTPN14 NA 0 NA 1.265 1 NA NA NA NA NA LTS-004 chr1 214556643 221875030 7318388 * c(LINC00210, BPNT1, CENPF, DUSP10, LYPLAL1, SPATA17, EPRS, ESRRG, RAB3GAP2, RNU5F-1, HLX, KCNK2, C1orf140, MIR194-1, MIR215, MARK1, RRP15, KCTD3, MARC2, GPATCH2, SLC30A10, IARS2, PTPN14, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, USH2A, C1orf115) 0.453569309157893 50 0.0726020745191885 1.15471532813125 3039 0.297345631572019 4 2 2 -6.79990027881656 LTS-004 chr1 221875031 236899015 15023985 * c(NA, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR320B2, MIR3620, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, LEFTY1, SPHAR, CAPN9, DUSP10, LYST, SNAP47, CCSAP, DNAH14, C1orf131, EDARADD, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, B3GALNT2, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, COG2, RBM34, FBXO28, ABCB10, GALNT2, TAF5L, NA NA NA NA NA NA NA NA NA LTS-004 DISC2, DISC1, GNG4, LIN9, CNIH4, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, COA6, LBR, LGALS8, FAM177B, ZNF847P, TRIM67, H3F3AP4, NID1, NVL, TRIM17, ARID4B, EGLN1, MAP10, SUSD4, HEATR1, ENAH, NUP133, ERO1B, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, AIDA, JMJD4, SRP9, SNORA14B, TARBP1, TBCE, LEFTY2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TLR5, GPR137B, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, ACTN2, WNT3A, TAF1A, HIST3H2A, GGPS1, TMEM63A, TOMM20, URB2) 0.454315851493552 412 0.0490899397997675 1.07071058703119 12621 0.276533551682317 4 2 2 -7.04101179646401 LTS-004 NA NA NA NA LTS-004 chr1 236899016 248059712 11160697 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, C1orf229, OR11L1, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, NA NA NA NA NA NA NA NA NA LTS-004 MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.463555600528244 99 0.0328937120043461 1.11337684708967 5560 0.352301929485977 4 2 2 -7.06568496967074 LTS-004 NA NA NA NA LTS-004 chr1 248059713 248059856 144 * c(TRIM58, OR2W3) 0.439 1 NA 1.74531636022352 3 1.21457907660775 8 8 0 -5.76441023195017 LTS-004 chr1 248059857 248790545 730689 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, TRIM58, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR2T8, OR2T3, OR2T29, OR2M1P, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR2L5) 0.372645623930783 49 0.10503386237256 1.19315192715445 596 1.10731957811247 6 4 2 -6.75159728607092 LTS-004 chr1 248790546 248801482 10937 * character(0) NA 0 NA 3.029 1 NA NA NA NA NA LTS-004 chr1 248801483 248813723 12241 * c(OR2T27, OR2T35) 0.355117712087778 12 0.0926894456415256 1.83886817747047 50 3.09678180183287 15 10 5 -6.73329874403161 LTS-004 chr1 248813724 248813735 12 * OR2T27 NA 0 NA 1.225 1 NA NA NA NA NA LTS-004 chr1 248813736 249208772 395037 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.429851054239963 7 0.0447825433676582 1.05816843811332 280 0.225295054420506 4 2 2 -6.77119708567455 LTS-004 chr1 249208773 249214134 5362 * PGBD2 NA 0 NA 1.01893552123587 63 0.172485984203192 3 NA NA -5.76497673531034 LTS-004 chr2 38824 40569 1746 * FAM110C 0.481 1 NA 0.940546708053399 33 0.176702599619024 3 3 0 -5.76441210036189 LTS-004 chr2 40570 87092912 87052343 * c(SNORA36C, SNORA70B, MIR216B, SLC8A1-AS1, OST4, LINC01126, LOC100132215, LOC100133985, LINC01119, DBIL5P2, SNAR-H, DCTN1-AS1, ARHGEF33, LOC100271832, ANAPC1P1, LOC100288911, MIR1301, BRE-AS1, SNORA80B, MIR4264, MIR4261, MIR4263, MIR3125, MIR4262, MIR3126, MIR3682, GTF3C2-AS1, LOC100505716, CEBPZOS, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, BOLA3-AS1, RNF103-CHMP3, NT5C1B-RDH14, INO80B-WBP1, MIR4779, MIR4765, NA NA NA NA NA NA NA NA NA LTS-004 MIR4757, MIR4434, MIR4778, MIR4429, MIR4432, MIR548AD, PARTICL, MIR5000, MIR5192, LINC00570, ACTR2, PREB, LRPPRC, PDIA6, RMDN2-AS1, CEBPZ, MPHOSPH10, SMYD5, MYCNOS, C1D, SEMA4F, CCT7, CCT4, GNLY, CENPA, CDC42EP3, STAMBP, TGOLN2, CGREF1, B3GNT2, USP39, SIX2, VAMP5, MTHFD2, PROKR1, RAB10, ADCY3, GPR75, YWHAQ, IMMT, SNRNP27, GTF2A1L, STON1, EMILIN1, CFAP36, GPN1, TEX261, CCDC85A, KLHL29, WDR92, MRPL53, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ADD2, PPP1R21, TRABD2A, TMEM150A, CMPK2, MBOAT2, TMEM18, C2orf73, CIB4, REG3G, CLHC1, PLEKHH2, OSR1, TTC32, ZNF513, GALM, TMEM178A, C2orf50, PQLC3, AHSA2, M1AP, CTNNA2, LINC01105, COMMD1, FBXO41, TCF23, GAREM2, PUS10, LINC00309, PLB1, MYADML, FAM84A, RMDN2, GDF7, ASPRV1, LBX2-AS1, CYP1B1, DCTN1, ADGRF3, OXER1, FAM179A, DDX1, UBXN2A, CLEC4F, DQX1, KCNG3, DGUOK, DHFRP3, DNAH6, DNMT3A, DOK1, DTNB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 E2F6, CYS1, EGR4, ALMS1P1, TET3, GKN2, APLF, KRTCAP3, TMEM17, SPRED2, EMX1, EPAS1, EFEMP1, FKBP1B, AAK1, MAPRE3, SLC4A1AP, EFR3B, MYT1L, WDR43, LPIN1, CEP68, PSME4, EXOC6B, EHBP1, PUM2, RHOQ, HAAO, FOSL2, WBP1, NTSR2, PRKD3, ALK, SPDYA, ATP6V1C2, RNASEH1, FSHR, FTH1P3, LCLAT1, GPATCH11, RASGRP3, QPCT, VAX2, POLR1A, CNRIP1, FAM98A, RAB11FIP5, IFT172, GCKR, GFPT1, SH3YL1, GGCX, SNORD53, NFU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ERLEC1, BMP10, ZNF638, HTRA2, EML4, SH2D6, LOC284950, FAM150B, LINC00486, C2orf61, DNAJC5G, IAH1, FLJ33534, CYP1B1-AS1, STON1-GTF2A1L, TRIB2, LGALSL, MSH6, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, ANXA4, EHD3, HK2, TLX2, HPCAL1, FOXN2, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, LOC339803, C2orf74, LOC339807, LINC01115, MSGN1, FIGLA, NOTO, CDKL4, PRORSD1P, LRRTM1, GEN1, C2orf48, PFN4, FAM228B, LOC375196, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 KCNF1, KCNK3, KCNS3, KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, C2orf71, LOC388942, TMEM247, LINC01118, TSPYL6, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, PTRHD1, SULT6B1, LHCGR, LOC400940, LINC00487, LINC00954, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, LTBP1, MIR216A, MIR217, EPCAM, MXD1, MAT2A, MATN3, MDH1, MEIS1, MPV17, CAPN14, MSH2, MTIF2, MYCN, CHAC2, ODC1, OTX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CD207, ITSN2, REG3A, PCBP1, TPRKB, WDPCP, MEMO1, TRAPPC12, ASB3, CRIM1, RNF181, DNAJC27, MRPL35, ATRAID, PCYOX1, VPS54, NBAS, DYNC2LI1, SF3B6, YPEL5, CHMP3, CPSF3, PEX13, ACP1, VIT, ATP6V1B1, PIGF, BCL11A, PLEK, SNTG2, POMC, ATAD2B, ETAA1, HEATR5B, AFTPH, TMEM214, RETSAT, PPM1B, PPM1G, SLC35F6, C2orf42, AUP1, PPP1CB, TRMT61B, PTCD3, FANCL, SRBD1, MOB1A, ASXL2, ADI1, PPP3R1, FBXO48, NDUFAF7, NAGK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TTC27, SLC30A6, CCDC88A, PRKCE, KDM3A, ALLC, EIF2AK2, GKN1, CYP26B1, POLE4, KCNK12, KCMF1, DPYSL5, PNO1, RPL23AP32, RTN4, TRIM54, PELI1, TTC7A, PPP4R3B, BIRC6, KIDINS220, MTA3, WDR35, RDH14, SLC4A5, NLRC4, RAB1A, REL, REG1A, REG1B, REG1CP, AGBL5, LDAH, RPS7, RPS27A, RRM2, RTKN, SDC1, THADA, RBKS, ATL2, FAM110C, ABCG5, ABCG8, SRSF7, HS1BP3, SFTPB, GMCL1, TTC31, LOC644838, LOC645949, RMND5A, FNDC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PAPOLG, SIX3, REEP1, SLC1A4, SLC3A1, FAM228A, SLC8A1, SNRPG, SOS1, SOX11, SPAST, SPR, SPTBN1, SRD5A2, ZFP36L2, STRN, ADAM17, TACR1, SNORD92, SNORD94, MIR558, MIR559, GCFC2, TGFA, TIA1, TPO, ACTG2, TSSC1, LINC01249, LOC728730, C1GALT1C1L, RAD51AP2, DNAJC27-AS1, MORN2, MEIS1-AS3, MYT1L-AS1, UCN, UGP2, VRK2, VSNL1, XDH, XPO1, SLC30A3, PXDN, ALMS1, MOGS, RNF103, COLEC11, CAD, CENPO, OR7E91P, GALNT14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CCDC121, SMC6, CLIP4, CAMKMT, GEMIN6, NOL10, ANKRD53, LRRTM4, FBXO11, WDCP, CALM2, THUMPD2, FAM49A, LBH, CAPG, DYSF, TCF7L1, INO80B, WDR54, FAM161A, EVA1A, ANTXR1, ELMOD3, C2orf16, YIPF4, PRADC1, ZNF512, DUSP11, KIAA1841, KLF11, DPY30, MCEE, LOXL3, ABHD1, PCGF1, CCDC142, FAM136A, MAP4K3, ATOH8, SELENOI, LBX2, NCOA1, VAMP8, PNPT1, SUCLG1, ASAP2, ST3GAL5, SLC5A6, EIF2B4, TAF1B, NAT8, MCFD2, ATP6V1E2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LOC90784, DHX57, PKDCC, RSAD2, COX7A2L, TMSB10, CAPN13, CD8A, CD8B, ITGB1BP1, DRC1, HNRNPLL, NT5C1B, NRXN1, OTOF, SFXN5, CRIPT, ROCK2, TP53I3, MRPL33, BRE, PREPL, FEZ2, SOCS5, GREB1, USP34, LAPTM4A, RNF144A, SNX17, SERTAD2, ACYP2, MRPL19, SUPT7L, ARHGAP25) 0.451931898429279 819 0.0639462415203124 1.08597592275422 46160 0.381333040296047 4 2 2 -7.11679509927754 LTS-004 NA NA NA NA LTS-004 chr2 87092913 87100929 8017 * c(ANAPC1P1, RMND5A) NA 0 NA 0.814 1 NA NA NA NA NA LTS-004 chr2 87100930 87425310 324381 * c(ANAPC1P1, LOC285074, RMND5A) 0.356053523810131 2 0.0565685424949238 0.828412744277991 131 0.301268384629414 4 3 1 -6.94886600339159 LTS-004 chr2 87425311 87425322 12 * RMND5A NA 0 NA 1.084 1 NA NA NA NA NA LTS-004 chr2 87425323 91809404 4384082 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.404230251915372 27 0.0756627884092144 1.13870919383981 915 0.699707401626803 4 2 2 -6.85480023645082 LTS-004 chr2 91809405 91872052 62648 * LOC654342 0.244 1 NA 1.49185998743302 3 0.730500513346842 6 6 0 -5.76442545544658 LTS-004 chr2 91872053 91937761 65709 * character(0) 0.290158884588692 20 0.0828873045958058 1.29043162573747 65 0.765829984333237 5 4 1 -6.73907362818335 LTS-004 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.0268479234796 16 0.195814527465831 3 NA NA -5.76618885158441 LTS-004 chr2 95537183 95537570 388 * c(TEKT4, LOC442028) 0.041 1 NA 1.17345928086444 8 0.123351703908551 4 4 0 -5.76444099714792 LTS-004 chr2 95537571 96040178 502608 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.247533169220704 9 0.165178691119648 1.07406319444754 459 0.265724182102135 3 3 0 -6.81075253735554 LTS-004 chr2 96040179 96080548 40370 * c(KCNIP3, FAHD2A) 0.485 1 NA 1.12514094406329 141 0.26063352518013 4 4 0 -5.76441318128752 LTS-004 chr2 96080549 97815062 1734514 * c(MIR3127, ARID5A, TRIM43, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ANKRD36, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, TRIM43B, FAHD2CP, LMAN2L, FER1L5, NEURL3, CIAO1) 0.428168989053441 50 0.062952424537122 1.04542484398072 2383 0.250767703418325 4 2 2 -6.83041044103181 LTS-004 chr2 97815063 97817561 2499 * ANKRD36 NA 0 NA 0.527 1 NA NA NA NA NA LTS-004 chr2 97817562 97928111 110550 * ANKRD36 0.321237396652504 9 0.0555427763079953 0.709536984842725 66 0.467257664401265 4 3 1 -6.89966741201203 LTS-004 chr2 97928112 98128186 200075 * c(ANKRD36, ANKRD36B) NA 0 NA 1.842 1 NA NA NA NA NA LTS-004 chr2 98128187 99343213 1215027 * c(ACTR1B, MGAT4A, CNGA3, COX5B, VWA3B, TMEM131, UNC50, INPP4A, COA5, ANKRD36B, LINC01125, ZAP70) 0.451269654656795 5 0.0170967833231868 1.0825519235094 1250 0.577983884795162 4 2 2 -7.05348541817849 LTS-004 chr2 99343214 99410252 67039 * MGAT4A NA 0 NA 0.689 1 NA NA NA NA NA LTS-004 chr2 99410253 99414021 3769 * KIAA1211L 0.357 1 NA 0.701057299441554 29 0.119775066280353 2 2 0 -5.76594143596777 LTS-004 chr2 99414022 99938301 524280 * c(TXNDC9, LYG1, MITD1, C2orf15, LYG2, KIAA1211L, MRPL30, LIPT1, TSGA10) 0.224 1 NA 0.750965163446826 443 0.189172475963431 2 2 0 -5.77221527407369 LTS-004 chr2 99938302 116602671 16664370 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, TXNDC9, MERTK, EDAR, TBC1D8, RABL2A, GPR45, RPL23AP7, NMS, FBLN7, TMEM182, TTL, CKAP2L, CBWD2, LINC01102, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, FOXD4L1, CREG2, LINC00116, FHL2, PSD4, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, NA NA NA NA NA NA NA NA NA LTS-004 SH3RF3, IL1A, IL1B, IL1R1, IL1RN, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, LINC01191, SULT1C3, NPAS2, NPHP1, MRPL30, REV1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, IL36G, DPP10, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, RGPD4-AS1, RFX8, PAX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, SLC35F5, POLR1B, CHCHD5, NCK2, C2orf40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.280939550144797 128 0.0721307112498788 0.762104265506629 8326 0.205044579002803 2 2 0 -6.79078205695741 LTS-004 NA NA NA NA LTS-004 chr2 116602672 118572393 1969722 * DDX18 NA 0 NA 0.787041661554424 19 0.211160909792891 2 NA NA -5.77215431469971 LTS-004 chr2 118572394 118572399 6 * DDX18 NA 0 NA 1.276 1 NA NA NA NA NA LTS-004 chr2 118572400 118579266 6867 * DDX18 0.166 1 NA 1.09251219314546 21 0.23118333273256 4 4 0 -5.76446428577615 LTS-004 chr2 118579267 145255210 26675944 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4783, MIR4784, MAP3K2, NXPH2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DARS, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, HNMT, SPOPL, CYP27C1, NCKAP5, GPR148, INHBB, NA NA NA NA NA NA NA NA NA LTS-004 LOC389033, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, INSIG2, LRP1B, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, ARHGAP15, CFC1, PROC, UGGT1, EPB41L5, PTPN4, RALB, SCTR, YY1P2, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, TMEM185B, SAP130, GTDC1, MZT2B, MAP3K19, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CCDC115, NIFK, SFT2D3, LINC01101, MARCO, DDX18, KYNU, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1, ZEB2) 0.188603483124657 175 0.0729674669392264 1.10484405233629 9897 0.33695869734899 4 4 0 -6.76589804780645 LTS-004 NA NA NA NA LTS-004 chr2 145255211 147597125 2341915 * c(ZEB2-AS1, TEX41, PABPC1P2, ZEB2) NA 0 NA 1.013874606114 35 0.164972964426286 3 NA NA -5.99034111979117 LTS-004 chr2 148602077 148657117 55041 * ACVR2A 0.311 1 NA 0.849367995702901 19 0.258583715673853 2 2 0 -5.76870772097539 LTS-004 chr2 148657118 155308126 6651009 * c(LOC100144595, MIR4773-1, MIR4773-2, STAM2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, EPC2, ARL5A, MMADHC, RBM43, KIF5C, RND3, NEB, ORC4, RIF1, PRPF40A, MBD5, RPRM, TNFAIP6, CACNB4, NMI, ACVR2A) 0.267182407612891 43 0.0607258239313171 0.781369492407741 3385 0.193192849211601 2 2 0 -6.75337291182714 LTS-004 chr2 155308127 155714868 406742 * c(LOC100144595, GALNT13, KCNJ3) NA 0 NA 0.815026122205818 145 0.149994996085118 2 NA NA -5.79364667172079 LTS-004 chr2 155714869 156126396 411528 * character(0) NA 0 NA 1.33 1 NA NA NA NA NA LTS-004 chr2 156126397 157406249 1279853 * c(GPD2, NR4A2) 0.155 1 NA 1.3980933954427 131 0.303388693130119 6 6 0 -5.78533283659481 LTS-004 chr2 157406250 178080723 20674474 * c(TANK, MIR933, SP9, MIR1246, SNORA70F, NA, LOC100506124, TTC21B-AS1, HOXD-AS2, LY75-CD302, PHOSPHO2-KLHL23, MIR4774, MIR4785, CERS6-AS1, DHRS9, PSMD14, KLHL41, MTX2, TBR1, RAPGEF4, GALNT5, CHN1, CHRNA1, NOSTRIN, XIRP2, BBS5, CCDC173, ACVR1C, UBR3, CCDC148, ATF2, MYO3B, KLHL23, SLC38A11, WDSUB1, UPP2, GPR155, DLX1, DLX2, DYNC1I2, DPP4, FAP, HNRNPA3, COBLL1, PLA2R1, CERS6, METAP1D, GAD1, GCA, GALNT3, NA NA NA NA NA NA NA NA NA LTS-004 GORASP2, GCG, STK39, GPD2, LINC01305, AHCTF1P1, GRB14, METTL5, OLA1, BAZ2B, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGB6, LINC01116, SP5, HAGLR, LRP2, LY75, MIR10B, LINC01124, PHOSPHO2, PDK1, ZAK, ATP5G3, FIGN, CCDC148-AS1, SLC4A10, SPC25, ERMN, G6PC2, RBMS1, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, MARCH7, SP3, SSB, WIPF1, SCRN3, FASTKD1, TTC21B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, PKP4, HAT1, TANC1, SLC25A12, ABCB11, B3GALT1, ACVR1, KCNH7, RAPGEF4-AS1, DAPL1, PPIG, CIR1, CYTIP, TLK1, CD302) 0.140946540728206 162 0.0368964904612655 1.42993196405715 12526 0.602943605471073 6 6 0 -6.76540853638097 LTS-004 NA NA NA NA LTS-004 chr2 178080724 178080869 146 * HNRNPA3 NA 0 NA 1.903 1 NA NA NA NA NA LTS-004 chr2 178080870 186412275 8331406 * c(LOC100130691, MIR548N, MIR1258, MIR3128, TTN-AS1, MIR4437, UBE2E3, NCKAP1, OSBPL6, NUP35, RBM45, DUSP19, TTC30B, ZNF385B, PPP1R1C, HNRNPA3, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, NFE2L2, DFNB59, PDE11A, PDE1A, FKBP7, DNAJC10, CWC22, PLEKHA3, SSFA2, TTN, AGPS, PRKRA, SESTD1, ZNF804A, TTC30A) 0.12000068627041 132 0.0311424712583443 1.78648742751581 6297 0.556696232222674 8 8 0 -6.74340778941876 LTS-004 chr2 186412276 186603290 191015 * character(0) NA 0 NA 1.186 1 NA NA NA NA NA LTS-004 chr2 186603291 186660772 57482 * FSIP2 0.147 1 NA 1.14028389903666 227 0.254197241705213 4 4 0 -5.7645518035112 LTS-004 chr2 186660773 187629066 968294 * c(FAM171B, ITGAV, FSIP2, ZC3H15) 0.277 1 NA 1.17348677845704 703 1.08078926432831 4 4 0 -5.76541687384368 LTS-004 chr2 187629067 190719279 3090213 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, ANKAR, ZSWIM2, SLC40A1, GULP1, PMS1, ASNSD1, OSGEPL1, MIR561, TFPI, WDR75, ORMDL1) 0.185406609754398 41 0.0469035985930249 1.16744763279926 1715 0.284543833626136 4 4 0 -6.77412404563429 LTS-004 chr2 190719280 203826688 13107409 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, NA NA NA NA NA NA NA NA NA LTS-004 PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.18115207305708 103 0.0507158671563461 1.05750680440819 7942 0.264865713567763 4 4 0 -7.11763318328667 LTS-004 NA NA NA NA LTS-004 chr2 203826689 216861072 13034384 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA LTS-004 NDUFS1, INO80D, MREG, PECR, CYP20A1, PTH2R, ZDBF2, BARD1, RPE, SNORA41, LINC00607, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.190286221821496 77 0.0560703773667086 1.14233035615077 7132 0.369057142469675 4 4 0 -6.75182159238067 LTS-004 NA NA NA NA LTS-004 chr2 216861073 226273689 9412617 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, MIR4439, ARPC2, SPEG, STK11IP, MOGAT1, AP1S3, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, PKI55, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PAX3, SERPINE2, NA NA NA NA NA NA NA NA NA LTS-004 PRKAG3, FEV, ANKZF1, ASIC4, DOCK10, MREG, PECR, MARCH4, WDFY1, NYAP2, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, SLC4A3, MRPL44, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, FAM124B, TUBA4B, WNT10A, CUL3, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.174962078109777 131 0.0457696625312093 1.09311703625056 7899 0.314590202198958 4 4 0 -6.83262172933128 LTS-004 NA NA NA NA LTS-004 chr2 226273690 226378343 104654 * NYAP2 NA 0 NA 1.23197262388336 12 0.168886975833131 5 NA NA -5.77004542043144 LTS-004 chr2 226378344 226446621 68278 * NYAP2 0.259 1 NA 0.773023606995138 3 0.00750555349946514 2 2 0 -5.76495718012608 LTS-004 chr2 226446622 230632028 4185407 * c(MIR5702, MIR5703, COL4A3, COL4A4, DAW1, AGFG1, IRS1, PID1, C2orf83, MFF, NYAP2, CCL20, LOC646736, LOC654841, TM4SF20, SPHKAP, SLC19A3, RHBDD1, DNER, TRIP12) 0.273524941969875 26 0.0621558834395735 0.799423297740318 1921 0.217917659910946 2 2 0 -6.78943614440484 LTS-004 chr2 230632029 230632034 6 * TRIP12 NA 0 NA 0.913 1 NA NA NA NA NA LTS-004 chr2 230632035 231193611 561577 * c(SP140, FBXO36, SLC16A14, SP110, TRIP12, SP140L) 0.199348003945921 10 0.0263185612575358 1.05490386600756 631 0.240702711108451 4 4 0 -6.83487728418387 LTS-004 chr2 231193612 231222473 28862 * c(SP140, SP140L) NA 0 NA 0.767 1 NA NA NA NA NA LTS-004 chr2 231222474 242836535 11614062 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, ALPI, ALPP, ALPPL2, NA NA NA NA NA NA NA NA NA LTS-004 C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, ATG16L1, PPP1R7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 USP40, HJURP, HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SP100, SPP2, SCARNA6, SCARNA5, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.269963479868184 327 0.0537619275400075 0.75378415858962 11512 0.243939369252047 2 2 0 -6.81686072860806 LTS-004 NA NA NA NA LTS-004 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.747190858425308 27 0.17206909100641 2 NA NA -5.76934708879869 LTS-004 chr3 239351 425588 186238 * CHL1 0 1 NA 1.18725075557918 85 0.264504845258581 4 4 0 -5.76953234496786 LTS-004 chr3 425589 3099124 2673536 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6) 0.179290218421574 3 0.0365285276644616 1.17570433906578 411 0.253553096251723 4 4 0 -6.83552026788993 LTS-004 chr3 3099125 33853689 30754565 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, PDCD6IP, LMCD1-AS1, SRGAP3-AS3, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4791, MIR4790, MIR548AC, MIR4792, MIR4442, SGO1-AS1, PRRT3-AS1, SLC6A1-AS1, OSBPL10-AS1, ARPC4, TADA3, CRTAP, ATG7, CMTM7, OSBPL10, FANCD2OS, LRRC3B, GALNT15, CCR4, KCNH8, TRIM71, CHCHD4, METTL6, TAMM41, IL17RE, SGO1, PP2D1, EFHB, CPNE9, LINC00691, ZCWPW2, CMC1, NEK10, NA NA NA NA NA NA NA NA NA LTS-004 CMTM8, FGD5, CIDECP, CNTN4, DAZL, STT3B, FANCD2, FBLN2, CAND2, CLASP2, GPD1L, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, FBXL2, CNOT10, THUMPD3, SUSD5, HACL1, TTLL3, GLB1, LSM3, RBMS3, NKIRAS1, LINC00692, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, GRM7, LINC00312, LMCD1, HRH1, LOC339862, GADL1, ZNF860, COL6A4P1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, VENTXP7, LOC401052, THUMPD3-AS1, ATP2B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 OGG1, OXTR, SSUH2, TRNT1, DYNC1LI1, CRBN, CCDC174, GHRL, PPARG, CMTM6, OXSM, ARL8B, SETD5, TMEM40, NGLY1, EMC3, BRK1, RAD18, LRRN1, RAB5A, RAF1, RARB, RPL15, RPL32, SATB1, CIDEC, SEC13, RBSN, SETMAR, AZI2, TMPPE, MTMR14, MRPS25, THRB-AS1, LINC00693, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TGFBR2, THRB, TIMP4, TOP2B, NR2C2, UBE2E1, UBE2E2, UBP1, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ZNF385D, HDAC11, TSEN2, GRIP2, COLQ, EOMES, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, BHLHE40, CAV3, KAT2B, OXNAD1, SH3BP5, SLC4A7, VGLL4, EDEM1, TBC1D5, TATDN2, SRGAP3, IQSEC1, NR1D2) 0.192794165108577 241 0.0530790486729192 1.06599661468926 15005 0.289282811185553 4 4 0 -7.26133839514895 LTS-004 NA NA NA NA LTS-004 chr3 33853690 33855003 1314 * PDCD6IP NA 0 NA 1.371 1 NA NA NA NA NA LTS-004 chr3 33855004 38912167 5057164 * c(ACVR2B-AS1, PDCD6IP, CTDSPL, ARPP21, SCN11A, GOLGA4, ACAA1, C3orf35, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, PLCD1, SCN5A, SCN10A, STAC, DCLK3, LRRFIP2, ACVR2B, SLC22A14, SLC22A13, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.187568150611333 48 0.0429311619120723 1.123175131104 3412 0.331449504427742 4 4 0 -6.73451816943419 LTS-004 chr3 38912168 47459679 8547512 * c(NRADDP, LOC100132146, PRSS46, KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, EIF1B, CXCR6, CCR9, SCN11A, ZNF501, CCR1, CCR3, CCR5, CCR8, ACKR2, LYZL4, KLHL40, TMEM42, CTNNB1, CCDC12, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, SACM1L, SCAP, EXOSC7, NBEAL2, KLHL18, LARS2, ZNF620, TMEM158, ALS2CL, TMIE, MYRIP, PTPN23, HIGD1A, XCR1, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, KIF9-AS1, SETD2, PRSS50, NA NA NA NA NA NA NA NA NA LTS-004 PRSS42, ZNF445, TOPAZ1, PRSS45, ZNF662, RPSA, LTF, MIR138-1, MOBP, EIF1B-AS1, MYL3, NKTR, ABHD5, SS18L2, ZDHHC3, LZTFL1, SLC6A20, SNRK, SLC25A38, ULK4, ANO10, ZKSCAN7, KIF15, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, SNORA62, KIF9, LIMD1-AS1, CSRNP1, GORASP1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, VIPR1, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, CCK, LIMD1, CCRL2, RPL14, SEC22C, ZNF502, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ZBTB47, ENTPD3) 0.1941595932886 178 0.0521980894732572 1.07423645782405 9015 0.346841007146213 4 4 0 -6.81660040069438 LTS-004 NA NA NA NA LTS-004 chr3 47459680 47469099 9420 * SCAP NA 0 NA 1.06222718020346 59 0.164842795663902 4 NA NA -5.76503047986138 LTS-004 chr3 47469100 47470026 927 * SCAP NA 0 NA 1.367 1 NA NA NA NA NA LTS-004 chr3 47470027 47539702 69676 * c(SCAP, ELP6) 0.393 1 NA 1.39579900631864 33 0.304701505699853 6 6 0 -5.76561848902889 LTS-004 chr3 47539703 59033091 11493389 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, LSMEM2, ASB14, DAG1, DNASE1L3, DOCK3, NA NA NA NA NA NA NA NA NA LTS-004 DUSP7, CELSR3, C3orf67, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, DHX30, LAMB2P1, RAD54L2, STAB1, FLNB, FAM208A, NAT6, ABHD14A, POC1A, NDUFAF3, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, GPX1, SPCS1, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.369827027349296 106 0.0848685517089952 1.41050342629049 17548 0.320789414013903 6 4 2 -6.85417819430069 LTS-004 NA NA NA NA LTS-004 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.915 1 NA NA NA NA NA LTS-004 chr3 59035205 67459185 8423981 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.378781031613189 35 0.0403310460726092 1.49710592093917 2264 0.46648456374346 6 4 2 -6.74142536963244 LTS-004 chr3 67459186 67459277 92 * SUCLG2 NA 0 NA 1.402 1 NA NA NA NA NA LTS-004 chr3 67459278 71834222 4374945 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, FRMD4B, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, LMOD3, PROK2, TMF1, SUCLG2, UBA3) 0.366515395388192 49 0.0692248505377425 1.36485001998929 1499 0.363589354635866 6 4 2 -6.86358475158806 LTS-004 chr3 71834223 71834231 9 * PROK2 NA 0 NA 0.824 1 NA NA NA NA NA LTS-004 chr3 71834232 75679977 3845746 * c(MIR1324, PPP4R2, LINC00870, PDZRN3, RYBP, CNTN3, EBLN2, SHQ1, PROK2, FAM86DP, GXYLT2) 0.443422114314128 24 0.0942105258896574 1.1391351981564 743 0.304437681575352 4 2 2 -6.74048230928954 LTS-004 chr3 75679978 75679988 11 * MIR1324 0.43 1 NA 1.942 1 NA NA NA NA NA LTS-004 chr3 75679989 75785460 105472 * c(ZNF717, MIR1324) 0.345003896023649 98 0.081993904136772 1.57309246077804 174 0.805880612863071 7 5 2 -6.73471722107076 LTS-004 chr3 75785461 75785470 10 * ZNF717 NA 0 NA 0.813 1 NA NA NA NA NA LTS-004 chr3 75785471 81811346 6025876 * c(ZNF717, GBE1, ROBO1, ROBO2) 0.344132605946381 126 0.090835065252165 1.17685032065418 757 0.388796282100278 4 3 1 -6.78732423361062 LTS-004 chr3 82854254 87276782 4422529 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, VGLL3, LINC00971) 0.255817939382974 3 0.0136503968196289 0.822155047358597 380 0.489516482728555 2 2 0 -7.77272285210062 LTS-004 chr3 87276783 87289810 13028 * CHMP2B NA 0 NA 0.985 1 NA NA NA NA NA LTS-004 chr3 87289811 87325605 35795 * c(CHMP2B, POU1F1) 0.214 1 NA 1.11546725844292 97 0.303627724529715 4 4 0 -5.76441773495731 LTS-004 chr3 87325606 90251050 2925445 * c(EPHA3, C3orf38, HTR1F, POU1F1, ZNF654, CGGBP1) 0.479 1 NA 0.785200391817224 575 0.211903149881157 2 2 0 -5.77291648642901 LTS-004 chr3 90251051 90283666 32616 * character(0) NA 0 NA 0.855904884354101 18 0.159963231069261 2 NA NA -5.77219865496551 LTS-004 chr3 93591838 93593119 1282 * PROS1 0.477 1 NA 1.02602579845215 25 0.177981506529939 3 3 0 -5.76456282745883 LTS-004 chr3 93593120 129513337 35920218 * c(ZBTB11-AS1, FAM86JP, LOC100129550, ZBTB20-AS1, MTHFD2P1, MIR548I1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MYLK-AS1, ISY1-RAB43, MIR4796, MIR4446, COX17, MIR5002, MIR5092, ALDH1L1-AS2, CFAP44-AS1, ALDH1L1-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, ALDH1L1, PDIA5, ADCY5, HHLA2, FSTL1, FILIP1L, MGLL, TXNRD3, OSBPL11, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, TPRA1, UROC1, FAM172BP, NA NA NA NA NA NA NA NA NA LTS-004 RPL32P3, H1FOO, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, ROPN1B, C3orf22, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, DRD3, ALG1L, ARL13B, DHFR2, GABRR3, HACD2, TIGIT, USF3, ALCAM, COPG1, MYH15, TMCC1, PLXND1, LINC01565, ZDHHC23, LINC00879, NUP210P1, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, GATA2, OR5K1, OR5H1, FAM162A, SEC22A, ZBTB11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MORC1, GOLGB1, GP9, GPR15, TUSC7, LINC00636, EPHA6, DNAJB8-AS1, RABL3, SLC9C1, PDCL3P4, ILDR1, ACAD9, KLF15, GTPBP8, TAGLN3, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, RAB43, H1FX-AS1, DUBR, TMPRSS7, CD200R1L, LNP1, CFAP100, ITGB5, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, STX19, MCM2, CD200, MYLK, NDUFB4, ARGFX, PODXL2, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PLXNA1, SEMA5B, WDR5B, PARP14, GRAMD1C, ROPN1, SIDT1, TRMT10C, SLC41A3, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, IFT122, TBC1D23, CFAP44, EAF2, PROS1, CLDND1, MUC13, HMCES, NIT2, POGLUT1, BBX, PCNP, SENP7, ISY1, HEG1, KIAA1257, ARHGAP31, CCDC191, KIAA1524, RHO, EEFSEC, RPL24, RPN1, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, TXNRD3NB, CCDC14, LOC653712, SLC15A2, LINC00488, SNORA7B, MIR548A3, MIR567, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR568, UPK1B, UMPS, CNBP, ZNF80, ZNF148, RAB7A, OR5H6, OR5H2, ZXDC, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, EFCC1, NAA50, ABTB1, OR5AC2, PARP9, ARL6, CHCHD6, CMSS1, SLC12A8, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, RUVBL1, CBLB, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, PHLDB2, LOC90246, EFCAB12, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.441473251221799 420 0.0867412028787337 1.08118380693886 21186 0.3398102389435 4 2 2 -6.97804795162822 LTS-004 NA NA NA NA LTS-004 chr3 129513338 129546570 33233 * TMCC1 NA 0 NA 1.346 1 NA NA NA NA NA LTS-004 chr3 129546571 129694681 148111 * c(TMCC1-AS1, TMCC1, TRH) 0.434 1 NA 1.3300042351591 19 0.223184593045979 5 5 0 -5.76561102748024 LTS-004 chr3 129694682 130098349 403668 * c(COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.359 1 NA 1.33903122368665 63 0.279066069180296 5 5 0 -5.76773613150348 LTS-004 chr3 130098350 141161876 11063527 * c(NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, PISRT1, NUDT16P1, DZIP1L, EPHB1, MRAS, DNAJC13, ZBTB38, COL6A5, ANAPC13, ARMC8, NPHP3, ATP2C1, TRIM42, ASTE1, PIK3R4, KY, LOC339874, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, IL20RB, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, NA NA NA NA NA NA NA NA NA LTS-004 BPESC1, RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, SNORA58, TF, PRR23A, NEK11, UBA5, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, SPSB4, PXYLP1, COPB2) 0.3631414281615 107 0.0621277161364062 1.46087268193283 6818 0.335357892686314 6 4 2 -6.77981440224806 LTS-004 NA NA NA NA LTS-004 chr3 141161877 141161880 4 * ZBTB38 NA 0 NA 1.128 1 NA NA NA NA NA LTS-004 chr3 141161881 141231024 69144 * c(ZBTB38, RASA2) 0.410629020089798 2 0.00565685424949239 1.17463539523556 148 0.198961659628699 10 6 4 -7.23043608491388 LTS-004 chr3 141231025 182636333 41405309 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, LINC01014, SLC9A9-AS1, LOC101243545, KCNMB2, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, DNAJC19, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, NA NA NA NA NA NA NA NA NA LTS-004 DHX36, AGTR1, ECT2, RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, ATP11B, U2SURP, NAALADL2, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, GPR160, KCNMB3, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, CCDC39, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, SOX2-OT, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, MIR15B, MIR16-2, TM4SF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MBNL1, MLF1, MME, NDUFB5, ATP1B3, CLDN11, P2RY1, NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, MFN1, PRKCI, MYNN, EIF5A2, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, GNB4, ZMAT3, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SCARNA7, MIR551B, MIR569, TERC, TFDP2, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, PHC3, ARL14, FXR1, SPATA16, EIF2A, ZIC4, HPS3, ACTRT3, GFM1, ACTL6A, B3GALNT1, TNFSF10, GMPS, USP13, SLC33A1, EGFEM1P, CHST2, RNF7, TSC22D2, P2RY14) 0.370428843007847 262 0.0616077575767038 1.42409355538048 16171 0.368783323297275 6 4 2 -6.92644652668238 LTS-004 NA NA NA NA LTS-004 chr3 182636334 183818008 1181675 * c(LINC00888, ABCC5, ABCC5-AS1, HTR3C, HTR3D, MCF2L2, ATP11B, LAMP3, HTR3E, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, MAP6D1, B3GNT5, KLHL6) 0.398696981675404 47 0.0435888939338403 1.34991826559046 1677 0.452617943883419 6 4 2 -6.86509950131711 LTS-004 chr3 183818009 194084050 10266042 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, IL1RAP, KNG1, NA NA NA NA NA NA NA NA NA LTS-004 FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.376772690597052 155 0.0551783815580878 1.45927319093647 7293 0.33953186471682 6 4 2 -6.73811358808423 LTS-004 NA NA NA NA LTS-004 chr3 194084051 195306436 1222386 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.383603805966525 29 0.0939176219057611 1.34158683165945 976 0.351537887457071 6 4 2 -6.78305340335441 LTS-004 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.937 1 NA NA NA NA NA LTS-004 chr3 195345046 195451836 106791 * c(MUC20, MIR570, SDHAP2) 0.320078581827753 8 0.0773133697548952 2.66128713680216 95 1.14855476595238 14 10 4 -6.73396599717759 LTS-004 chr3 195451837 195451880 44 * MUC20 NA 0 NA 1.54 1 NA NA NA NA NA LTS-004 chr3 195451881 195476016 24136 * c(MUC20, MUC4) 0.441545926326199 13 0.0503961231720182 1.89601749009181 88 0.758679163166341 8 4 4 -6.73527566900955 LTS-004 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.861 1 NA NA NA NA NA LTS-004 chr3 195477782 196242264 764483 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, RNF168, SLC51A, TCTEX1D2, SMCO1, SDHAP1, UBXN7, LINC00885, MUC4, PCYT1A, TFRC) 0.29686004833307 26 0.106841370552509 1.33902517185111 1271 0.329873021902082 5 4 1 -6.73767376006486 LTS-004 chr3 196242265 196281012 38748 * character(0) NA 0 NA 1.809 1 NA NA NA NA NA LTS-004 chr3 196281013 197665599 1384587 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, NCBP2-AS2, DLG1, FBXO45, SENP5, LOC220729, NCBP2, WDR53, NRROS, MELTF, PAK2, PIGX, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, RUBCN) 0.394504629016148 21 0.133333220238047 1.634317641506 1692 0.359543548366557 7 4 3 -6.77679299216505 LTS-004 chr3 197665600 197770512 104913 * c(RPL35A, IQCG, LMLN) NA 0 NA 1.70782891803375 215 0.371999279608924 7 NA NA -5.76506792076596 LTS-004 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.333 1 NA 0.771565490214913 13 0.152725998995688 2 2 0 -5.76441153316632 LTS-004 chr4 60336 433939 373604 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.252488325064215 16 0.0553805019840016 0.845136625128649 272 0.245882516332422 2 2 0 -6.8594044711826 LTS-004 chr4 433940 3514665 3080726 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, DOK7, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, ABCA11P, NA NA NA NA NA NA NA NA NA LTS-004 MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.195476823812607 130 0.045651739678993 1.04803960490272 5647 0.293698529381224 4 4 0 -6.84035765553744 LTS-004 NA NA NA NA LTS-004 chr4 3514666 3589560 74895 * c(LINC00955, LRPAP1) 0.488 1 NA 1.02781477381842 49 0.252584969201785 3 3 0 -5.76903602168612 LTS-004 chr4 3589561 4190595 601035 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.375447017812309 23 0.0732984046653282 1.32992489625857 93 0.639957515427491 6 4 2 -6.74428811727102 LTS-004 chr4 4190596 4199083 8488 * OTOP1 0.185 1 NA 1.00525774642892 7 0.12615825284897 3 3 0 -5.76551918413994 LTS-004 chr4 4199084 8848082 4648999 * c(LOC100129931, MIR4274, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, OTOP1, CRMP1, JAKMIP1, TRMT44, ZBTB49, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, TBC1D14, SORCS2, AFAP1, S100P, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, MRFAP1, LOC93622, TADA2B, HTRA3, KIAA0232) 0.205427180590646 115 0.0518159301552039 1.063639206378 3594 0.303592547641801 4 4 0 -6.87267903868936 LTS-004 chr4 8848083 8868754 20672 * character(0) NA 0 NA 0.705 1 NA NA NA NA NA LTS-004 chr4 8868755 17503433 8634679 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, MIR5091, MIR548AX, C1QTNF7, CLNK, CPEB2, LINC01085, DRD5, TAPT1, TAPT1-AS1, BOD1L1, FBXL5, LINC01097, LINC01096, FAM200B, HMX1, USP17L6P, USP17L9P, CPEB2-AS1, SLC2A9, CC2D2A, NKX3-2, QDPR, DEFB131, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FGFBP2, ZNF518B, PROM1, LDB2, RAB28, NA NA NA NA NA NA NA NA NA LTS-004 CD38, WDR1, HS3ST1, FGFBP1) 0.214744272772413 76 0.0519993117363358 1.00038566945018 2544 0.275477542271785 3 3 0 -6.94703493222426 LTS-004 NA NA NA NA LTS-004 chr4 17503434 17578817 75384 * c(QDPR, CLRN2) 0.474 1 NA 0.884379251748276 60 2.8821250977037 3 3 0 -5.76443623272555 LTS-004 chr4 17578818 17974528 395711 * c(LCORL, FAM184B, LAP3, DCAF16, NCAPG, MED28) 0.172 1 NA 1.04504546912783 711 0.360273541248977 4 4 0 -5.77359758507506 LTS-004 chr4 17974529 21699264 3724736 * c(SLIT2-IT1, PACRGL, LCORL, MIR218-1, KCNIP4, SLIT2) 0.281375392634441 4 0.0438358681142889 0.850201282012729 422 0.193572876500645 2 2 0 -7.2340065138628 LTS-004 chr4 21699265 44708806 23009542 * c(MIR4275, LOC100505912, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, SLC34A2, PTTG2, PPARGC1A, LIAS, ARAP2, GNPDA2, SHISA3, KLB, DHX15, ADGRA3, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, DCAF4L1, YIPF7, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, LOC344967, RBPJ, KCNIP4-IT1, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, SEPSECS, KLF3, RBM47, TMEM33, LGI2, PGM2, C4orf19, NA NA NA NA NA NA NA NA NA LTS-004 TBC1D19, PI4K2B, CHRNA9, N4BP2, NWD2, STIM2, WDR19, GBA3, RFC1, GUF1, RPL9, SOD3, MIR573, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, KCNIP4, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1) 0.278700438476788 127 0.045592701314995 0.763900462936313 7319 0.321761336089313 2 2 0 -6.75853052308478 LTS-004 NA NA NA NA LTS-004 chr4 44708807 44724289 15483 * GNPDA2 NA 0 NA 0.749771666569488 45 0.195851345399896 2 NA NA -5.76464902301422 LTS-004 chr4 46037806 46038274 469 * GABRG1 0.368 1 NA 1.19233304989972 11 0.46397392168095 4 4 0 -5.76441497665377 LTS-004 chr4 46038275 48996673 2958399 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.456475263002011 68 0.0570957542523395 1.10927855373335 2375 0.275106096371739 4 2 2 -6.79494621357988 LTS-004 chr4 48996674 49064107 67434 * CWH43 NA 0 NA 1.11389373695801 65 0.186444435164598 4 NA NA -5.76446919623982 LTS-004 chr4 52709193 52904641 195449 * c(DCUN1D4, LRRC66, SGCB) 0.402 1 NA 1.14240680263528 309 0.278742873604281 4 4 0 -5.76490740176336 LTS-004 chr4 52904642 56883977 3979336 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, NMU, SPATA18, PDCL2, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, DANCR, LOC644145, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1, CLOCK, CEP135) 0.447444064466771 34 0.0835089842210573 1.1237872624168 1897 0.275097704161425 4 2 2 -6.7400092097586 LTS-004 chr4 56883978 56885569 1592 * CEP135 NA 0 NA 0.973 1 NA NA NA NA NA LTS-004 chr4 56885570 62543162 5657593 * c(THEGL, PAICS, ARL9, AASDH, ADGRL3, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, KIAA1211, REST, SPINK2, SRP72, NOA1, HOPX, CEP135) 0.450147142299056 31 0.0890585526855878 1.03830557398538 1142 0.233206461612558 4 2 2 -7.09563814776913 LTS-004 chr4 62543163 62596211 53049 * ADGRL3 NA 0 NA 1.242 1 NA NA NA NA NA LTS-004 chr4 62596212 68906617 6310406 * c(EPHA5-AS1, CENPC, EPHA5, ADGRL3, TECRL, STAP1, GNRHR, TMPRSS11A, LOC401134, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.433495150756081 57 0.0433584248735906 1.19814838157973 1277 0.327958421777472 4 2 2 -6.88962289730492 LTS-004 chr4 68906618 68907326 709 * UBA6-AS1 NA 0 NA 0.343066499931622 40 0.313139478016279 0 NA NA -5.76461115906067 LTS-004 chr4 68907327 69363240 455914 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) NA 0 NA 1.15778602615365 398 0.234322424439041 4 NA NA -5.76935711057898 LTS-004 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.101578435169392 39 0.181235283734088 0 NA NA -7.67110380365399 LTS-004 chr4 69434317 69512310 77994 * character(0) NA 0 NA 3.231 1 NA NA NA NA NA LTS-004 chr4 69512311 79300993 9788683 * c(FAM47E, CSN1S2BP, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, CSN1S1, CSN2, CSN3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, ART3, CXCL9, MTHFD2L, NA NA NA NA NA NA NA NA NA LTS-004 LOC441025, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, FRAS1, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.449554542311197 144 0.0409443966725744 1.17973410942034 6437 0.298307283491386 4 2 2 -6.93903852521455 LTS-004 NA NA NA NA LTS-004 chr4 79300994 79340231 39238 * FRAS1 NA 0 NA 1.16657420491114 40 0.186043308991516 4 NA NA -5.76544907476236 LTS-004 chr4 79340232 79342961 2730 * FRAS1 NA 0 NA 0.646 1 NA NA NA NA NA LTS-004 chr4 79342962 79345650 2689 * FRAS1 0.253 1 NA 0.701781574957809 9 0.421726510904875 2 2 0 -5.76449643434205 LTS-004 chr4 79345651 79839609 493959 * c(LINC01094, PAQR3, ANXA3, BMP2K, FRAS1) 0.266400639635546 17 0.0286834908450632 0.817701244597137 645 0.230283893439885 2 2 0 -6.80361019703866 LTS-004 chr4 79839610 84465804 4626195 * c(THAP9-AS1, LINC01088, LINC00989, HPSE, HELQ, PCAT4, ANTXR2, LIN54, PAQR3, RASGEF1B, FGF5, SEC31A, C4orf22, GK2, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, NAA11, GPAT3, HNRNPDL) 0.264707754968115 20 0.0437943459460477 0.737160026511993 2253 0.176867540081593 2 2 0 -6.96677545833253 LTS-004 chr4 84465805 84502671 36867 * GPAT3 NA 0 NA 0.764 1 NA NA NA NA NA LTS-004 chr4 84502672 89911698 5409027 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, C4orf36, PPM1K, DMP1, DSPP, WDFY3, NAP1L5, FAM13A-AS1, IBSP, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, NKX6-1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, MEPE, KLHL8, PTPN13, SPP1, ARHGAP24, SPARCL1, GPAT3, HERC3, ABCG2) 0.276233148798066 61 0.0421502387057395 0.789784878387746 3317 0.204621126157759 2 2 0 -6.76620048478458 LTS-004 chr4 89911699 98865174 8953476 * c(STPG2-AS1, FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.274952365775386 39 0.0477192786476899 0.861660040218485 1764 0.935377432689895 2 2 0 -6.80339716240733 LTS-004 chr4 98865175 98893375 28201 * STPG2 NA 0 NA 0.503 1 NA NA NA NA NA LTS-004 chr4 98893376 106395073 7501698 * c(MIR3684, LOC100507053, LINC01216, TSPAN5, CENPE, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, EIF4E, METAP1, LOC256880, PPA2, DAPP1, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, TET2, BANK1, PPP3CA, BDH2, RAP1GDS1, SLC39A8, TACR3, UBE2D3, DNAJB14, CXXC4, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.290534723713006 85 0.0649588794731634 0.764354940095784 3753 0.509878863445521 2 2 0 -6.76967527942572 LTS-004 chr4 106395074 155471449 49076376 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3140, LINC01095, GIMD1, SEC24B-AS1, MIR4799, LINC00499, ARHGEF38-IT1, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, RRH, PLK4, PRDM5, LSM6, NUDT6, CYP2U1, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, ZNF827, SH3D19, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SGMS2, SYNPO2, EDNRA, EGF, ELF2, TIGD4, TMEM154, ENPEP, FABP2, FGF2, NA NA NA NA NA NA NA NA NA LTS-004 HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, NOCT, PPA2, DKK2, INTU, ARFIP1, ZNF330, LINC01091, RPL34-AS1, RNF175, ANK2, GYPA, GYPB, GYPE, ANXA2P1, HADH, ANXA5, CFI, PRSS48, LRIT3, IL2, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, MIR302B, NDUFC1, LEF1, LARP7, MYOZ2, GATB, PITX2, PLRG1, EXOSC9, GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ARHGEF38, MCUB, LARP1B, BBS7, FBXW7, ZGRF1, AP1AR, MAML3, TMEM184C, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, ABCE1, SCOC, RPL34, RPS3A, NEUROG2, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, MIR577, TLR2, TRPC3, CETN4P, FAM160A1, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, GSTCD, TNIP3, JADE1, NAA15, ABHD18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ALPK1, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, TTC29, CASP6, MND1, SLC10A7, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PAPSS1, PRMT9, AIMP1, TIFA, NDST3, TBCK, LRBA, SEC24D) 0.268942997221097 252 0.0570987359902038 0.801389398212914 17545 0.383333478417888 2 2 0 -6.9779443903273 LTS-004 NA NA NA NA LTS-004 chr4 155471450 184241686 28770237 * c(MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, RBM46, AGA, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GPM6A, LINC01098, GRIA2, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC340017, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, NA NA NA NA NA NA NA NA NA LTS-004 SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, CLDN22, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, DDX60, TENM3, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TDO2, TLL1, LINC00290, VEGFC, HAND2-AS1, MAP9, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.253142094888957 143 0.0564381201013221 0.849474481261477 7794 0.426666245929664 2 2 0 -7.55288576028203 LTS-004 NA NA NA NA LTS-004 chr4 184241687 186379560 2137874 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25) 0.296318342171876 32 0.065712464755125 0.776197477271463 1619 0.200973069626939 2 2 0 -6.79581822716373 LTS-004 chr4 186379561 186379566 6 * CCDC110 NA 0 NA 1.202 1 NA NA NA NA NA LTS-004 chr4 186379567 190945944 4566378 * c(ZFP42, TRIML2, F11, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.296840551491513 28 0.0538921124874484 0.859195872173844 1493 0.217707284037197 2 2 0 -7.4060362222155 LTS-004 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.96535290268684 23 0.586757866982969 3 NA NA -5.76443109745547 LTS-004 chr5 140347 163266 22920 * PLEKHG4B 0.459 1 NA 0.88779143604074 69 0.195631070567857 3 3 0 -5.76594567964845 LTS-004 chr5 163267 5240002 5076736 * c(PDCD6, MIR4277, LOC100506688, MIR4457, MIR4456, MIR4635, LOC100996325, SLC12A7, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, C5orf38, IRX2, ADAMTS16, PP7080, LINC01019, SLC6A19, LINC01020, SLC6A18, LRRC14B, NDUFS6, IRX4, CEP72, AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, TERT, SDHAP3, LOC728613, IRX1, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.40538575051761 140 0.100668436824368 1.01841294613646 2837 0.359144863252276 3 2 1 -6.85274787517687 LTS-004 chr5 5240003 5242218 2216 * ADAMTS16 0.497 1 NA 1.00823837879722 5 0.182414911671168 3 3 0 -5.76456287784846 LTS-004 chr5 5242219 6656382 1414164 * c(UBE2QL1, ADAMTS16, ICE1, LINC01018, FLJ33360, NSUN2, SRD5A1, MED10) 0.459259171415534 10 0.0167809415707224 1.00699872033059 559 0.217536431945373 4 2 2 -7.73680875003438 LTS-004 chr5 6656383 6663027 6645 * SRD5A1 NA 0 NA 1.165 1 NA NA NA NA NA LTS-004 chr5 6663028 45260537 38597510 * c(SNORD123, CCDC152, LOC100130744, LOC100132356, CDH6, MIR4279, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506548, LOC100506639, MIR4458, MIR4454, MIR4637, MIR4636, NNT-AS1, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, PAIP1, ADCY2, MRPS30, SUB1, PAPD7, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, TTC23L, LOC153684, DAB2, NA NA NA NA NA NA NA NA NA LTS-004 DAP, UGT3A2, NIM1K, DNAH5, RANBP3L, FGF10, CCT5, PDZD2, FBXL7, NNT, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, LOC285692, LOC285696, DROSHA, HMGCS1, LOC340107, LOC340113, PLCXD3, HCN1, IL7R, C5orf34, ANXA2R, LIFR, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NPR3, OXCT1, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, WDR70, BRIX1, C5orf22, PRKAA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ANKH, PRLR, CCL28, PRDM9, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, LINC01021, TMEM267, NIPBL-AS1, LOC648987, AGXT2, SKP2, SLC1A3, ANKRD33B, C5orf42, SRD5A1, TARS, MIR580, TRIO, GUSBP1, C6, LOC729506, LSP1P3, C7, C9, ZNF131, FASTKD3, SPEF2, ADAMTS12, ROPN1L, CARD6, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, NUP155) 0.455273257160802 263 0.0530679730536823 1.05298234330124 13135 0.285124636236286 4 2 2 -7.76125223751419 LTS-004 NA NA NA NA LTS-004 chr5 45260538 45696278 435741 * HCN1 NA 0 NA 1.14618060335962 91 0.311580316337046 4 NA NA -5.76564893812902 LTS-004 chr5 49692017 49694583 2567 * EMB 0.497 1 NA 0.999216338882958 47 0.266096570494364 3 3 0 -5.76447087435988 LTS-004 chr5 49694584 53839074 4144491 * c(FST, SNX18, EMB, LOC257396, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, ARL15, LOC642366, MIR581, PARP8, HSPB3) 0.44871907115444 34 0.049475574196443 1.01252956948267 1238 0.283944391247787 4 2 2 -7.06645584456757 LTS-004 chr5 53839075 68850398 15011324 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, PIK3R1, DHX29, NA NA NA NA NA NA NA NA NA LTS-004 DDX4, SGTB, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, NDUFAF2, MRPS36) 0.400055956730164 126 0.0708641768142096 0.909748238998701 6991 0.318380237812953 3 2 1 -6.88032831307658 LTS-004 NA NA NA NA LTS-004 chr5 68850399 69373289 522891 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.32983719590355 39 0.430650844417576 5 NA NA -5.76553784769092 LTS-004 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.067 1 NA NA NA NA NA LTS-004 chr5 69717474 70308625 591152 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.512372384002186 56 0.251486541428126 1 NA NA -5.89994788044002 LTS-004 chr5 70308626 70751602 442977 * c(GUSBP9, GTF2H2, NAIP, PMCHL2, BDP1, LOC647859) NA 0 NA 0.296051085024067 39 0.302436143314132 0 NA NA -6.12440770098157 LTS-004 chr5 70751603 70751723 121 * BDP1 NA 0 NA 0.793 1 NA NA NA NA NA LTS-004 chr5 70751724 74895829 4144106 * c(MIR4804, MIR4803, COL4A3BP, NSA2, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, ANKRD31, FAM169A, HEXB, HMGCR, TNPO1, MAP1B, GCNT4, POLK, BDP1, ANKRA2, MCCC2, ARHGEF28, BTF3, PTCD2, UTP15, GFM2, ENC1, CARTPT) 0.389891873158576 56 0.0630281502764656 0.946808225073083 2780 0.242396555211516 3 2 1 -6.76309146813252 LTS-004 chr5 74895830 92919818 18023989 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR3977, EDIL3, LHFPL2, POLR3G, CETN3, IQGAP2, CKMT2, LYSMD3, JMY, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, OTP, SSBP2, BHMT2, SERINC5, RNU5E-1, NBPF22P, DMGDH, ANKRD34B, MTX3, MIR9-2, ARSB, MEF2C, CRSP8P, NR2F1-AS1, MSH3, AGGF1, NA NA NA NA NA NA NA NA NA LTS-004 WDR41, ARRDC3, RASA1, RASGRF2, RPS23, BHMT, LOC644936, LINC00461, SCARNA18, SNORA47, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, ATG10, ADGRV1, ZCCHC9, ZBED3, SPZ1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, ZFYVE16) 0.414179180028345 115 0.0715745865095973 0.862017284759759 7098 0.468178682717319 3 2 1 -7.15896907548068 LTS-004 NA NA NA NA LTS-004 chr5 92919819 92920040 222 * NR2F1 NA 0 NA 0.207 1 NA NA NA NA NA LTS-004 chr5 92920041 96367739 3447699 * c(MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.413487179155776 65 0.0665510684477602 0.808970237687712 2539 0.184628012560932 2 1 1 -6.93483129665628 LTS-004 chr5 96367740 96371242 3503 * character(0) 0.432544993478528 2 0.0919238815542512 1.17573789139533 72 0.271881014764471 4 2 2 -6.73560292685597 LTS-004 chr5 96371243 125886075 29514833 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, PAM, TMED7, PRR16, COMMD10, NA NA NA NA NA NA NA NA NA LTS-004 PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.416557394498033 178 0.0653434808390323 0.866172299448939 8056 0.265793269905671 3 2 1 -8.3066147340571 LTS-004 NA NA NA NA LTS-004 chr5 125886076 125887795 1720 * ALDH7A1 NA 0 NA 0.713 1 NA NA NA NA NA LTS-004 chr5 125887796 126113478 225683 * c(TEX43, LMNB1, ALDH7A1, PHAX) 0.430809047157467 3 0.0378989885529064 0.763955903511468 207 0.152375364094549 2 1 1 -6.75852556664867 LTS-004 chr5 126113479 129522113 3408635 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, LMNB1, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.44366005023949 30 0.033765860470797 0.93780078802642 1670 0.27143505715623 3 2 1 -7.46632098011676 LTS-004 chr5 129522114 134165767 4643654 * c(MIR1289-2, MIR3936, MIR3661, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, CAMLG, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, DDX46) 0.37100699647352 47 0.0952574145309788 0.818564734852204 4249 0.3952187077652 2 1 1 -7.07616297613144 LTS-004 chr5 134165768 140553623 6387856 * c(SRA1, VTRNA2-1, MIR874, LINC01024, MIR4461, C5orf66, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, C5orf24, DCANP1, CTNNA1, SLC25A48, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL9, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, NDUFA2, NEUROG1, NPY6R, IGIP, NA NA NA NA NA NA NA NA NA LTS-004 TIFAB, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PITX1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, TRPC7, PURA, ECSCR, SIL1, SPOCK1, TGFBI, SNHG4, UBE2D2, WNT8A, TXNDC15, SLC4A9, NME5, PCBD2, PSD2, CYSTM1, EIF4EBP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CDC23, CD14, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, PCDHA9, MATR3, DDX46, CDC25C, SLC23A1) 0.414447500018754 132 0.0764515770086582 0.84955645233237 6907 0.198339312297731 2 1 1 -7.54207828197078 LTS-004 NA NA NA NA LTS-004 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.239 1 NA NA NA NA NA LTS-004 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.412347438226441 2 0.051618795026618 0.311265129951144 61 0.276280082801865 3 2 1 -6.78928977061582 LTS-004 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.73 1 NA NA NA NA NA LTS-004 chr5 140559822 148808671 8248850 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, AFAP1L1, GRPEL2, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, STK32A, FGF1, ABLIM3, ARHGAP26, PCDHGA12, IL17B, RELL2, NR3C1, HTR4, C5orf46, SPINK6, MIR143, SPINK14, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, NA NA NA NA NA NA NA NA NA LTS-004 PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.423428406871855 91 0.0521833950170618 0.857125447656134 6484 0.196055851467326 3 2 1 -7.89583572006416 LTS-004 NA NA NA NA LTS-004 chr5 148808672 148810190 1519 * c(MIR143, CARMN) NA 0 NA 1.207 1 NA NA NA NA NA LTS-004 chr5 148810191 148884903 74713 * c(CSNK1A1, MIR143, CARMN) NA 0 NA 1.20082003237842 105 0.287885520147545 4 NA NA -5.76691155794505 LTS-004 chr5 148884904 148884909 6 * CSNK1A1 NA 0 NA 0.914 1 NA NA NA NA NA LTS-004 chr5 148884910 156022034 7137125 * c(MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, SYNPO, PPARGC1B, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SLC26A2, SLC36A1, FAT2, HMGXB3, LARP1, GEMIN5, CCDC69, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, ARSI, IRGM, SAP30L-AS1, ARHGEF37, MFAP3, ATOX1, DCTN4, PDE6A, PDGFRB, GALNT10, RBM22, NMUR2, RPS14, SGCD, SLC6A7, SPARC, TCOF1, SAP30L, CAMK2A, TIGD6, SMIM3, ZNF300, NA NA NA NA NA NA NA NA NA LTS-004 MYOZ3, CNOT8, HAND1, CD74) 0.419854147216219 171 0.0660413277118523 0.856238636158205 6142 0.289619645174438 3 2 1 -7.25252807948113 LTS-004 NA NA NA NA LTS-004 chr5 156022035 160112223 4090189 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, HAVCR1, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.403106288330704 26 0.0909019167099268 0.812861870386552 2787 0.189899417637403 2 1 1 -6.98414172495791 LTS-004 chr5 160112224 160113110 887 * ATP10B NA 0 NA 1.055 1 NA NA NA NA NA LTS-004 chr5 160113111 160757984 644874 * c(ATP10B, GABRB2, LOC285629) 0.395104872450224 2 0.067175144212722 1.05019172377998 154 0.317377388339684 3 2 1 -6.7837644409759 LTS-004 chr5 160757985 175392041 14634057 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NUDCD2, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HMMR, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, SLIT3, BNIP1, NA NA NA NA NA NA NA NA NA LTS-004 SNORA74B, STK10, MIR585, PANK3, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, CCNG1, BOD1, UBTD2, SFXN1) 0.408031026580576 111 0.087084864518317 0.855216092721211 5266 0.231241972180548 3 2 1 -8.10280504813768 LTS-004 NA NA NA NA LTS-004 chr5 175392042 175477164 85123 * THOC3 NA 0 NA 1.78865964067724 44 1.15554298302732 8 NA NA -5.76442038508362 LTS-004 chr5 175477165 180374817 4897653 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-004 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.429635264895291 130 0.05483660556126 0.830726398723041 6939 0.214786566666974 2 1 1 -7.05470476392817 LTS-004 NA NA NA NA LTS-004 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.462 1 NA NA NA NA NA LTS-004 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) 0.484 1 NA 1.59354410441918 64 0.337163868109163 7 7 0 -5.7646908784572 LTS-004 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.747 1 NA NA NA NA NA LTS-004 chr5 180430826 180663912 233087 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.407665350337875 10 0.0412613620715555 0.833536352576766 405 0.189460337883294 3 2 1 -6.80129184368813 LTS-004 chr5 180663913 180688111 24199 * c(RACK1, SNORD95, SNORD96A, TRIM52) NA 0 NA 0.817552823390556 127 0.130450097629337 2 NA NA -5.76700291148341 LTS-004 chr6 203389 335251 131863 * DUSP22 0.403 1 NA 0.921655018943835 35 0.171919113284722 3 3 0 -5.7665000838203 LTS-004 chr6 335252 3244381 2909130 * c(LOC100507194, GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, BPHL, TUBB2A, RIPK1, FOXQ1) 0.419242427398669 47 0.054751908714337 1.04753780148283 1397 0.30295684580372 4 2 2 -6.89433763744867 LTS-004 chr6 3244382 3272573 28192 * c(PSMG4, SLC22A23) 0.430618499734124 14 0.0405550094465381 1.3339307370903 192 2.07819884871868 7 4 3 -6.7332025784519 LTS-004 chr6 3272574 3272575 2 * SLC22A23 NA 0 NA 1.131 1 NA NA NA NA NA LTS-004 chr6 3272576 29798140 26525565 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, NA NA NA NA NA NA NA NA NA LTS-004 KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, ZSCAN23, NKAPL, TOB2P1, FAM217A, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, CDYL, LY86, EEF1E1, FAM65B, ZSCAN12, KIAA0319, NUP153) 0.447977183090768 373 0.0657527788845796 1.08210335876677 13855 0.343488590669082 4 2 2 -6.91612747088638 LTS-004 NA NA NA NA LTS-004 chr6 29798141 29855901 57761 * character(0) 0.472 1 NA 1.47881696040479 9 6.78752512784381 6 6 0 -5.76441016143371 LTS-004 chr6 29855902 29912457 56556 * character(0) 0.393371577278831 39 0.0801593133676191 0.88644669185965 89 0.439283436041921 3 2 1 -6.74439557462419 LTS-004 chr6 29912458 29912923 466 * character(0) 0.223 1 NA 0.86266235153494 7 0.383131706808383 3 3 0 -5.76442696273405 LTS-004 chr6 29912924 29943035 30112 * character(0) 0.314714013964231 18 0.0783709129715866 1.29814552017287 37 0.336271507902509 8 6 2 -6.75493024118909 LTS-004 chr6 29943036 29976262 33227 * character(0) 0.468 1 NA 1.1747201357955 5 0.241128181679372 4 4 0 -5.76513697696383 LTS-004 chr6 29976263 31171257 1194995 * character(0) 0.444972364053589 130 0.0412812256905486 1.06936835896558 3116 1.11652378230912 4 2 2 -6.74909710873845 LTS-004 chr6 31171258 31236567 65310 * character(0) 0.326 1 NA 0.893975537693255 11 0.208310083551159 3 3 0 -5.76749255468123 LTS-004 chr6 31236568 31238402 1835 * character(0) 0.366826388158265 18 0.0576625296033866 2.32693806085804 46 37.4076174847208 9 6 3 -6.73330423022929 LTS-004 chr6 31238403 31238490 88 * character(0) 0.281 1 NA 0.72 1 NA NA NA NA NA LTS-004 chr6 31238491 31324992 86502 * character(0) 0.400983104236294 40 0.109655123700838 0.748581411922288 102 0.285191993932548 3 2 1 -6.76880434996071 LTS-004 chr6 31324993 31371205 46213 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-004 chr6 31371206 31378751 7546 * character(0) 0.385 1 NA 1.10371090082099 13 0.158579713838264 4 4 0 -5.76445800532472 LTS-004 chr6 31378752 31379134 383 * character(0) 0.489 1 NA 0.98470850503386 7 0.132208709460243 3 3 0 -5.76442929719903 LTS-004 chr6 31379135 31964398 585264 * character(0) 0.456208824355501 75 0.0587328752116788 1.06707895365273 2948 0.222850881507498 4 2 2 -6.80479938454599 LTS-004 chr6 31964399 31965404 1006 * character(0) NA 0 NA 2.137 1 NA NA NA NA NA LTS-004 chr6 31965405 31997741 32337 * character(0) 0.344104723880439 11 0.0740343900433502 1.66724115596606 132 0.767714335962523 7 5 2 -6.73415528620419 LTS-004 chr6 31997742 32005968 8227 * character(0) NA 0 NA 0.992 1 NA NA NA NA NA LTS-004 chr6 32005969 32230608 224640 * character(0) 0.436896847179254 51 0.0625848882342544 1.10330989916939 1168 0.269977869554712 4 2 2 -6.73393359077444 LTS-004 chr6 32230609 32256418 25810 * character(0) 0.492 1 NA 1.09933872010639 13 0.251650704197459 4 4 0 -5.76451066571446 LTS-004 chr6 32256419 32427789 171371 * character(0) 0.461512201095411 52 0.027691599098526 1.14266019937705 375 0.303329603777194 4 2 2 -7.12177158382285 LTS-004 chr6 32427790 32485487 57698 * HLA-DRB5 0.202 1 NA 1.27457149565455 7 0.608928840943943 5 5 0 -5.76443593836783 LTS-004 chr6 32485488 32605366 119879 * c(HLA-DQA1, HLA-DRB5) 0.299125225394341 101 0.112473165996636 1.22582343445502 196 0.564528025314755 5 4 1 -6.7337475665011 LTS-004 chr6 32605367 32605371 5 * HLA-DQA1 NA 0 NA 0.43 1 NA NA NA NA NA LTS-004 chr6 32605372 32606773 1402 * HLA-DQA1 0.293715868504417 4 0.0360832371053374 0.869188257482597 6 0.366835521726018 12 9 3 -6.74100284748274 LTS-004 chr6 32606774 32609286 2513 * HLA-DQA1 0.414 1 NA 0.595887838635479 13 0.731490995790842 1 1 0 -5.76441024405759 LTS-004 chr6 32609287 32629891 20605 * HLA-DQA1 0.437692413490464 54 0.0582755838731044 0.799192535703893 162 0.599245351565918 2 1 1 -6.73317902063233 LTS-004 chr6 32629892 32632557 2666 * character(0) 0.25 1 NA 0.490319390647503 14 0.490003862958534 0 0 0 -5.76454388162238 LTS-004 chr6 32632558 32632745 188 * character(0) 0.204226177798741 3 0.0219393102292058 0.80799964251454 14 0.892098292026928 18 15 3 -6.74003704168123 LTS-004 chr6 32632746 32726966 94221 * character(0) 0.275378400422179 15 0.0910446253741747 1.26768823086848 85 0.479462306799457 6 5 1 -6.74918346988496 LTS-004 chr6 32726967 32732677 5711 * character(0) 0.497 1 NA 0.977012582809878 19 0.312368559491931 3 3 0 -5.76444254439076 LTS-004 chr6 32732678 35378778 2646101 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, C6orf1, LEMD2, SCUBE3, ANKS1A, SPDEF, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, ZNF76, UQCC2) 0.417286066115322 104 0.111208634303007 1.06882957869462 4574 0.501143810819935 4 2 2 -6.76955384947815 LTS-004 chr6 35378779 35391787 13009 * PPARD 0.482 1 NA 1.26298897302555 19 0.263092205836528 5 5 0 -5.76448492068844 LTS-004 chr6 35391788 35748945 357158 * c(MIR5690, FANCE, ARMC12, FKBP5, LOC285847, CLPSL1, CLPSL2, RPL10A, PPARD, TEAD3, TULP1) 0.463358260943083 14 0.0277179673548714 1.03868197976293 498 0.178671466195632 4 2 2 -7.22033522680849 LTS-004 chr6 35748946 35765131 16186 * c(CLPS, CLPSL1) NA 0 NA 0.683783782092952 39 0.0966795351851504 2 NA NA -5.78022374761747 LTS-004 chr6 35765132 35773087 7956 * LHFPL5 NA 0 NA 1.364 1 NA NA NA NA NA LTS-004 chr6 35773088 46109016 10335929 * c(LOC100131047, LINC01512, TOMM6, MIR3925, MIR4647, MIR4641, MIR4642, MIR4462, CDKN1A, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, TAF8, MAPK14, CCDC167, PTCRA, DNAH8, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, ENPP4, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, MTCH1, NA NA NA NA NA NA NA NA NA LTS-004 ZNF318, YIPF3, USP49, MDGA1, BRPF3, GNMT, GLO1, GLP1R, PNPLA1, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, TREML1, TREML3P, SLC35B2, C6orf222, RAB44, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, NFYA, MRPL2, ETV7, PPIL1, PEX6, PGC, PIM1, CLIC5, TREM2, TREM1, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, MAPK13, LRFN2, AARS2, XPO5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PTK7, CPNE5, PRPH2, ZFAND3, SRSF3, C6orf132, MRPL14, DLK2, SRF, SRPK1, TBCC, MIR586, BYSL, TDRG1, VEGFA, TFEB, TREML2, KCNK16, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.451647785886808 239 0.0684490056611962 1.09025018003897 11414 0.251763688906136 4 2 2 -6.83397096947243 LTS-004 NA NA NA NA LTS-004 chr6 46109017 46110985 1969 * ENPP4 NA 0 NA 1.327 1 NA NA NA NA NA LTS-004 chr6 46110986 50811239 4700254 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, CENPQ, ENPP5, RHAG, TFAP2B, CRISP2, PLA2G7, TFAP2D, SLC25A27) 0.443341585796399 32 0.0863813515941132 1.16952953715673 2244 0.25820479051123 4 2 2 -6.80730040279782 LTS-004 chr6 50811240 53516408 2705169 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, TFAP2B, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.44233054309281 32 0.0768193314044021 1.04287865915034 1858 0.269225724703754 4 2 2 -6.85154837604576 LTS-004 chr6 53516409 57398264 3881856 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.453215415918421 65 0.0384045207174684 1.1418944839893 2504 0.25456045490521 4 2 2 -6.83118292247335 LTS-004 chr6 57398265 57398270 6 * PRIM2 0.226 1 NA 1.858 1 NA NA NA NA NA LTS-004 chr6 57398271 58445594 1047324 * c(GUSBP4, PRIM2) 0.321507343311139 23 0.0843699738658166 1.31097034924846 75 0.6655650361139 5 4 1 -6.77757941167717 LTS-004 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.897 1 NA NA NA NA NA LTS-004 chr6 62390154 62407067 16914 * KHDRBS2 0.455 1 NA 1.39132178975376 23 0.360823541995943 6 6 0 -5.76464608865249 LTS-004 chr6 62407068 73951513 11544446 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.457089533609916 44 0.035118615074284 1.14366276279274 2702 0.300731659797943 4 2 2 -6.92498382832758 LTS-004 chr6 73951514 73951737 224 * KHDC1 NA 0 NA 0.958 1 NA NA NA NA NA LTS-004 chr6 73951738 74495183 543446 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.433117706316819 11 0.140797985522779 1.00090318533846 715 0.236146916356076 3 2 1 -6.77588096309101 LTS-004 chr6 74495184 74495257 74 * CD109 0.476 1 NA 1.465 1 NA NA NA NA NA LTS-004 chr6 74495258 85445422 10950165 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.451022005591802 56 0.0681582169108577 1.14281053552433 3822 0.298543242043052 4 2 2 -6.77837556317726 LTS-004 chr6 85445423 90661576 5216154 * c(SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, SNORD50B, SPACA1, GJA10, RNGTT, TBX18, CASP8AP2) 0.460006334216886 82 0.0342887204558123 1.05737102745132 3550 0.224766326665965 4 2 2 -7.17000572770696 LTS-004 chr6 90661577 91022630 361054 * c(MIR4464, BACH2) NA 0 NA 0.967502935948584 13 0.144157321469752 3 NA NA -5.76883083637046 LTS-004 chr6 91022631 91223239 200609 * character(0) NA 0 NA 0.78 1 NA NA NA NA NA LTS-004 chr6 91223240 91223442 203 * MAP3K7 0.292 1 NA 0.649662271248291 5 0.189932093128044 1 1 0 -5.76443172729579 LTS-004 chr6 91223443 91296539 73097 * MAP3K7 0.319418427839662 7 0.0357011404379668 0.674449861004154 147 0.152840053668549 1 1 0 -7.28454312941736 LTS-004 chr6 91296540 105177097 13880558 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.264354275611489 43 0.050237872703973 0.80247495683691 2432 0.214520686514126 2 2 0 -6.9920786036311 LTS-004 chr6 105177098 109982202 4805105 * c(LIN28B-AS1, LOC100422737, LOC100996634, BVES, SEC63, BVES-AS1, AIM1, CCDC162P, AK9, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, MICAL1, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5, ZBTB24) 0.266725671458209 77 0.0576933611730585 0.724598152708151 3436 0.190468045837435 2 2 0 -7.06885259935625 LTS-004 chr6 109982203 109983728 1526 * AK9 NA 0 NA 1.614 1 NA NA NA NA NA LTS-004 chr6 109983729 121625658 11641930 * c(TRAPPC3L, LOC100287632, TRAF3IP2, GTF3C6, NUS1, SLC16A10, COL10A1, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, FYN, FAM26E, MCM9, ASF1A, AMD1, GPR6, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, CDC40, RWDD1, PLN, GOPC, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, NA NA NA NA NA NA NA NA NA LTS-004 MIR548B, TSPYL1, TPI1P3, METTL24, FAM184A, RPF2, DDO, SLC22A16, WISP3, WASF1, MFSD4B, FIG4) 0.264572564478711 98 0.074506300593363 0.770617155444241 5524 0.232793830635217 2 2 0 -6.74681929204647 LTS-004 NA NA NA NA LTS-004 chr6 121625659 127647717 6022059 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3) 0.290320309113101 32 0.0492195542048994 0.828626905322279 1951 0.250672408458565 2 2 0 -7.04959439062757 LTS-004 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.713 1 NA NA NA NA NA LTS-004 chr6 127648124 148872598 21224475 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, CITED2, HBS1L, RAB32, MTFR2, TMEM200A, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, NA NA NA NA NA NA NA NA NA LTS-004 SLC35D3, IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LTV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 REPS1, PEX3, STX11, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.277717621002995 174 0.0815582952935748 0.765308219049271 9929 0.226431488029661 2 2 0 -6.76304937767372 LTS-004 NA NA NA NA LTS-004 chr6 148872599 150210699 1338101 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, TAB2, SASH1, ZC3H12D, NUP43, SUMO4, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.298041698266652 26 0.0642614850555016 0.709526885822433 991 0.16624684207642 2 2 0 -7.01936233242957 LTS-004 chr6 150210700 150210702 3 * c(RAET1E-AS1, RAET1E) NA 0 NA 1.041 1 NA NA NA NA NA LTS-004 chr6 150210703 153309762 3099060 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, AKAP12) 0.263708912610069 86 0.0491085622798396 0.811274697615154 2648 0.331902410412392 2 2 0 -6.80234931526997 LTS-004 chr6 153309763 160222275 6912513 * c(LOC100129518, C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, MRPL18, ACAT2, GTF2H5, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.288351904845216 69 0.0584560516492908 0.735322238700679 3516 0.791065832684373 2 2 0 -6.78124213200512 LTS-004 chr6 160222276 160224202 1927 * PNLDC1 NA 0 NA 0.843 1 NA NA NA NA NA LTS-004 chr6 160224203 167590641 7366439 * c(AIRN, LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, PNLDC1, C6orf118, GPR31, PACRG-AS1, PRR18, IGF2R, DKFZp451B082, TCP10L2, LPA, MAS1, MAP3K4, LINC00602, PARK2, MPC1, PLG, AGPAT4, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, T, LOC729603, AGPAT4-IT1, LPAL2, RNASET2, LINC00473, QKI) 0.273610604667848 71 0.0537127167029716 0.780074651868443 2993 0.197972056395661 2 2 0 -6.74103134814785 LTS-004 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.334 1 NA NA NA NA NA LTS-004 chr6 167591885 167595567 3683 * TCP10L2 NA 0 NA 0.449664204731059 96 0.397568494457355 0 NA NA -5.76445266260908 LTS-004 chr6 167595568 169615965 2020398 * c(HGC6.3, DACT2, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.257521015955146 31 0.0763237304378985 0.820464241757591 1121 0.283548341686361 2 2 0 -6.81585216156328 LTS-004 chr6 169615966 169634809 18844 * THBS2 0.253299238741477 12 0.0313093073585592 0.696350913489269 130 0.239946804008153 6 5 1 -6.89977179661158 LTS-004 chr6 169634810 170893599 1258790 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, THBS2, LINC00574, FAM120B) NA 0 NA 0.737261548120287 839 0.563444783233072 2 NA NA -5.76993996776775 LTS-004 chr7 193047 540741 347695 * c(WI2-2373I1.2, LOC442497, PDGFA, FAM20C) 0.263 1 NA 0.728701878345511 183 0.158961524364568 2 2 0 -5.79389909267917 LTS-004 chr7 540742 5926027 5385286 * c(RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, MICALL2, FBXL18, TTYH3, NA NA NA NA NA NA NA NA NA LTS-004 MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.276306064229961 128 0.0530078960607141 0.748698922412651 5168 0.194203744133497 2 2 0 -6.82439191461957 LTS-004 NA NA NA NA LTS-004 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.511 1 NA NA NA NA NA LTS-004 chr7 5937950 5958596 20647 * CCZ1 NA 0 NA 0.487700303180395 49 0.147379343594573 0 NA NA -5.77499605649474 LTS-004 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.156 1 NA NA NA NA NA LTS-004 chr7 5959444 6844637 885194 * c(ANKRD61, KDELR2, DAGLB, CCZ1B, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, CCZ1, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.279563738028353 49 0.0738385062145761 0.721469706590325 1463 0.242385853693027 2 2 0 -6.77914614142138 LTS-004 chr7 6844638 6864269 19632 * CCZ1B 0.210475755617539 3 0.0298663690461362 1.45262846928966 39 0.593057368081164 8 7 1 -6.73831503603392 LTS-004 chr7 6864270 6864368 99 * CCZ1B NA 0 NA 0.679 1 NA NA NA NA NA LTS-004 chr7 6864369 14025766 7161398 * c(LOC100131257, ARL4A, GLCCI1, PER4, ETV1, VWDE, CCZ1B, THSD7A, NXPH1, ICA1, COL28A1, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, SCIN, PHF14) 0.27104501375753 35 0.0618930631048763 0.783128607255186 1792 0.46260467841001 2 2 0 -6.73843426610852 LTS-004 chr7 14025767 14184748 158982 * c(DGKB, ETV1) NA 0 NA 0.749882109474829 32 0.172836663057276 2 NA NA -5.76752904688296 LTS-004 chr7 14184749 14185876 1128 * DGKB 0.43 1 NA 1.41975452430223 17 0.371297852927047 6 6 0 -5.7644160718008 LTS-004 chr7 14185877 20685484 6499608 * c(MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, AGR2, AGR3, DGKB, AHR, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, ABCB5, MACC1, ITGB8, AGMO, MEOX2, ANKMY2, TWIST1, ISPD, HDAC9) 0.461036531747104 48 0.0325664010710948 1.12958583778805 2004 0.271983973981545 4 2 2 -7.01008089770283 LTS-004 chr7 20685485 20778583 93099 * ABCB5 0 1 NA 1.12165440266676 113 0.497530385676395 4 4 0 -5.76441014200254 LTS-004 chr7 20778584 21467733 689150 * c(SP8, RPL23P8, ABCB5, SP4) 0.355282575322994 3 0.2740699424113 1.08142466461298 99 0.460466694324517 4 3 1 -6.73658265139232 LTS-004 chr7 21467734 30876278 9408545 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, STEAP1B, RPS2P32, OSBPL3, GARS, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, NA NA NA NA NA NA NA NA NA LTS-004 HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, FAM221A, IL6, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, CDCA7L, KLHL7, STK31, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, GGCT, FAM188B, FAM126A, PLEKHA8, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.370985986383224 150 0.0696965605986703 1.4052770659221 5873 0.535379649763647 6 4 2 -6.78301099813158 LTS-004 NA NA NA NA LTS-004 chr7 30876279 31829048 952770 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.379266558889756 33 0.0729875586118704 1.61217835075979 867 0.410370739430923 6 4 2 -6.76189957437358 LTS-004 chr7 31829049 37251154 5422106 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, ANLN, DPY19L2P1, TBX20, RP9, HERPUD2, MIR550A2, EEPD1, ELMO1, SEPT7) 0.372374205368728 55 0.0472252643108071 1.42924162250206 2227 0.72366094656602 6 4 2 -6.75404522141857 LTS-004 chr7 37251155 37252872 1718 * ELMO1 NA 0 NA 0.977 1 NA NA NA NA NA LTS-004 chr7 37252873 38505712 1252840 * c(TRG-AS1, AMPH, GPR141, TARP, NME8, EPDR1, SFRP4, STARD3NL, ELMO1) 0.438465941488739 45 0.0451741076281535 1.15843556800682 641 0.450762073076236 4 2 2 -6.73683608435402 LTS-004 chr7 38505713 38516629 10917 * AMPH NA 0 NA 1.0641948740088 17 0.201928350717598 4 NA NA -5.76485734075576 LTS-004 chr7 38516630 38530606 13977 * AMPH NA 0 NA 0.76 1 NA NA NA NA NA LTS-004 chr7 38530607 39746466 1215860 * c(POU6F2-AS1, POU6F2, VPS41, AMPH, FAM183BP, YAE1D1, RALA, LOC646999) 0.274 1 NA 0.757578549536039 497 0.165363355618619 2 2 0 -5.77620775713566 LTS-004 chr7 39746467 48886802 9140336 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, C7orf57, MPLKIP, ABCA13, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, SUN3, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, LINC00265, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, RALA, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, NA NA NA NA NA NA NA NA NA LTS-004 SNORA5C, SNORA9, UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.283654429490425 100 0.0529156408872183 0.765634279585975 5736 0.449979077941194 2 2 0 -6.75198256421983 LTS-004 NA NA NA NA LTS-004 chr7 48886803 48965572 78770 * CDC14C NA 0 NA 0.737547725337035 35 0.107469769053926 2 NA NA -5.77376313250465 LTS-004 chr7 49545688 50135811 590124 * c(C7orf72, ZPBP, VWC2) 0.492 1 NA 1.06706897582688 95 0.246143530993492 4 4 0 -5.77902541364385 LTS-004 chr7 50135812 55863123 5727312 * c(DDC-AS1, C7orf72, EGFR-AS1, IKZF1, DDC, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, FKBP9P1, LINC01446, LANCL2, FIGNL1, VOPP1) 0.459821945721468 52 0.0318240354255904 1.0769499891398 1734 0.25201413501761 4 2 2 -7.0800939267471 LTS-004 chr7 55863124 55914268 51145 * SEPT14 0 1 NA 1.17025231375742 44 1.38838452426167 4 4 0 -5.76443853030445 LTS-004 chr7 55914269 57531782 1617514 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.297295259650533 22 0.153810503528436 1.10924680022422 564 0.37477438598981 4 3 1 -6.78992685176343 LTS-004 chr7 57531783 57533232 1450 * ZNF716 NA 0 NA 1.39779140432054 23 0.529709238611482 6 NA NA -5.76441799962248 LTS-004 chr7 62758725 63355649 596925 * ZNF733P NA 0 NA 1.52592365977655 40 0.912541322914004 6 NA NA -5.76500924423959 LTS-004 chr7 63355650 63356407 758 * character(0) 0.282 1 NA 1.44601994778882 7 0.362980190985154 6 6 0 -5.76441106871119 LTS-004 chr7 63356408 63774584 418177 * c(LINC01005, ZNF679, ZNF727, ZNF736, ZNF735) 0.267615602963919 9 0.0985834389968439 1.50023936925598 119 0.372303106608619 6 5 1 -6.73499815676389 LTS-004 chr7 63774585 63809907 35323 * ZNF736 NA 0 NA 1.67904452539307 29 0.205619668990741 7 NA NA -5.76463184626504 LTS-004 chr7 63809908 63980388 170481 * c(ZNF680, YWHAEP1, ZNF736) NA 0 NA 0.784 1 NA NA NA NA NA LTS-004 chr7 63980389 64254756 274368 * c(LOC100128885, ZNF680, ZNF107, LOC641746) 0.484 1 NA 0.957530783733791 177 0.22112371925405 3 3 0 -5.76476314967864 LTS-004 chr7 64254757 64539088 284332 * c(ZNF273, ERV3-1, ZNF117, CCT6P3, ZNF138) 0.459851220717212 15 0.0255283222734131 1.00475984906788 240 0.304066970803493 4 2 2 -7.14845975321761 LTS-004 chr7 64539089 64639758 100670 * character(0) NA 0 NA 0.657 1 NA NA NA NA NA LTS-004 chr7 64639759 65084068 444310 * ZNF92 NA 0 NA 0.648830678391761 85 0.163452862854556 1 NA NA -5.82587214281764 LTS-004 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 1.165 1 NA NA NA NA NA LTS-004 chr7 65150661 77538297 12387637 * c(POM121C, PMS2P9, LOC100133091, MIR4284, MIR3914-1, MIR3914-2, APTR, MIR4651, MIR4650-1, MIR4650-2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, NA NA NA NA NA NA NA NA NA LTS-004 TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.438904122855249 121 0.064536486786327 1.07650131115561 5682 0.264823866801007 4 2 2 -6.90833077477549 LTS-004 NA NA NA NA LTS-004 chr7 77538298 77539549 1252 * PHTF2 NA 0 NA 1.2 1 NA NA NA NA NA LTS-004 chr7 77539550 86507767 8968218 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, PHTF2, CACNA2D1, CD36, SEMA3E, MAGI2) 0.434307927442485 23 0.103017305426765 1.18919695259759 2249 0.297943703443484 4 2 2 -6.93323481725262 LTS-004 chr7 86507768 99002689 12494922 * c(MIR3609, LOC100506136, MIR4652, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, BET1, ARPC1A, DBF4, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, SAMD9L, C7orf62, ZNF804B, KIAA1324L, TMEM130, LMTK2, PEG10, HEPACAM2, FAM133B, BRI3, TECPR1, STEAP2, STEAP1, GNG11, GNGT1, DLX6-AS1, MGC72080, LRRD1, C7orf76, KPNA7, ASNS, DPY19L2P4, NPTX2, OCM2, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, NA NA NA NA NA NA NA NA NA LTS-004 ADAM22, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, PPP1R9A, VPS50, BAIAP2L1, SLC25A40, SDHAF3, SMURF1, MIR489, GATAD1, CASD1, SRI, TAC1, MIR591, MIR653, TMEM243, STEAP4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, TRRAP, FZD1, RBM48, MYH16, NA, GTPBP10, KRIT1, SGCE, CLDN12, DMTF1) 0.453790475763051 120 0.0550043441116105 1.09023201910161 8350 0.258039181876784 4 2 2 -6.86976418677038 LTS-004 NA NA NA NA LTS-004 chr7 99002690 99006123 3434 * PDAP1 NA 0 NA 1.019 1 NA NA NA NA NA LTS-004 chr7 99006124 100348282 1342159 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, POP7, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, GIGYF1, AZGP1P1, NA NA NA NA NA NA NA NA NA LTS-004 CYP3A43, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, ZNF394, BUD31, TRIM4, AP4M1, ATP5J2) 0.45621470087956 61 0.0698327392804395 1.03139778990507 3796 0.215148916134657 4 2 2 -6.89193193195232 LTS-004 NA NA NA NA LTS-004 chr7 100348283 100549499 201217 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) NA 0 NA 1.10938140069471 663 4.22870437001744 4 NA NA -5.76441097893776 LTS-004 chr7 100549500 100549573 74 * character(0) 0.248 1 NA 2.688 1 NA NA NA NA NA LTS-004 chr7 100549574 100550184 611 * character(0) 0.388311394702768 21 0.0624024190617792 2.12513146978973 33 0.947160244314071 16 10 6 -6.73328037466413 LTS-004 chr7 100550185 100550271 87 * character(0) 0.253 1 NA 1.62646765361019 4 0.789675619057175 7 7 0 -5.76441014427253 LTS-004 chr7 100550272 100550478 207 * character(0) 0.243404179840191 7 0.107823709734698 1.88588169071697 12 0.702582702993359 19 15 4 -6.73314747416342 LTS-004 chr7 100550479 100550484 6 * character(0) NA 0 NA 1.101 1 NA NA NA NA NA LTS-004 chr7 100550485 100551283 799 * character(0) 0.243575346434023 16 0.0919724369942792 0.876395599305786 38 0.656378701123644 15 12 3 -6.73490868456102 LTS-004 chr7 100551284 100551286 3 * character(0) 0.217 1 NA 1.943 1 NA NA NA NA NA LTS-004 chr7 100551287 100551566 280 * character(0) 0.250878842988352 14 0.0820446474538356 2.16770510590154 18 0.730170740619971 18 14 4 -6.73497031437513 LTS-004 chr7 100551567 100551578 12 * character(0) 0.381 1 NA 2.29 1 NA NA NA NA NA LTS-004 chr7 100551579 100552867 1289 * character(0) 0.354362099125688 42 0.0785149955716532 2.01585580533036 70 1.34891384294683 18 12 6 -6.73340239320104 LTS-004 chr7 100552868 100552894 27 * character(0) NA 0 NA 0.873 1 NA NA NA NA NA LTS-004 chr7 100552895 100615500 62606 * MUC12 0.367355670535024 31 0.0628578871621901 1.28647037029291 105 0.712850432426739 9 6 3 -6.74721209971928 LTS-004 chr7 100615501 100682535 67035 * c(MUC12, MUC17) 0.492 1 NA 0.985298363391708 227 0.310144078613545 3 3 0 -5.76504041662494 LTS-004 chr7 100682536 110603642 9921107 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, ZNHIT1, SH2B2, DUS4L, AP1S1, COL26A1, MUC17, CUX1, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, CLDN15, POLR2J2, HBP1, DNAJC2, GPR22, SLC26A4-AS1, MOGAT3, DPY19L2P2, NAT16, SLC26A5, LHFPL3, LAMB1, DNAJB9, NA NA NA NA NA NA NA NA NA LTS-004 EIF3IP1, NRCAM, ORC5, SERPINE1, PNPLA8, FIS1, SLC26A4, PIK3CG, POLR2J, PUS7, ALKBH4, POLR2J3, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, IFT22, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, VGF, PRKRIP1, CBLL1, ORAI2, TRIM56, ARMC10, IMMP2L, PLOD3, MYL10, PMPCB) 0.442178055801275 94 0.076985783093012 1.05803235810993 6433 0.247629005458218 4 2 2 -7.05024018925609 LTS-004 NA NA NA NA LTS-004 chr7 110603643 110762469 158827 * c(LRRN3, IMMP2L) NA 0 NA 0.677 1 NA NA NA NA NA LTS-004 chr7 110762470 110765446 2977 * c(LRRN3, IMMP2L) NA 0 NA 0.671062597621059 61 0.0802746344737284 1 NA NA -5.76791990205918 LTS-004 chr7 110765447 111031846 266400 * c(LRRN3, IMMP2L) NA 0 NA 0.852 1 NA NA NA NA NA LTS-004 chr7 111031847 111983075 951229 * c(ZNF277, IMMP2L, DOCK4) 0.474438229151182 4 0.0137719521734091 1.08298818857004 452 0.196468934657823 4 2 2 -9.33050482816611 LTS-004 chr7 111983076 112121069 137994 * c(ZNF277, LSMEM1, IFRD1) 0.385 1 NA 1.46848615810934 108 0.309186624149772 6 6 0 -5.764411077762 LTS-004 chr7 112121070 112124782 3713 * LSMEM1 NA 0 NA 1.079 1 NA NA NA NA NA LTS-004 chr7 112124783 135613262 23488480 * c(LOC100130705, SMKR1, MIR3666, RNA5SP244, AASS, FAM3C, CFTR, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, MGC27345, RNF133, ZNF800, TFEC, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POT1, HYALP1, TES, SLC13A4, COPG2, SND1, SND1-IT1, LSMEM1, TPI1P2, FLJ40288, GPR37, WDR91, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, NA NA NA NA NA NA NA NA NA LTS-004 STRA8, IMPDH1, IRF5, KCND2, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MET, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, CNOT4, NRF1, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, PODXL, GPR85, ING3, CHCHD3, PPP1R3A, RBM28, TMEM140, METTL2B, ANKRD7, AKR1B10, STRIP2, PTPRZ1, EXOC4, OPN1SW, LRRC4, TMEM168, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NA, C7orf73, CCDC136, SLC13A1, SMO, SPAM1, BPGM, MIR592, MIR593, TMEM229A, UBE2H, WNT2, LUZP6, C7orf49, GCC1, ST7, CPED1, CALD1, CALU, CAPZA2, CTTNBP2, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, WASL, PLXNA4, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, CEP41) 0.455297900707871 187 0.066392885012369 1.07939062753579 11488 0.313414986991997 4 2 2 -6.97760405051919 LTS-004 NA NA NA NA LTS-004 chr7 135613263 135613860 598 * LUZP6 0.231 1 NA 1.07870926044084 15 0.274653409296326 4 4 0 -5.76441743882274 LTS-004 chr7 135613861 135614862 1002 * LUZP6 0.469 1 NA 1.01002532435689 22 0.161472874432485 3 3 0 -5.76450334618388 LTS-004 chr7 135614863 135635282 20420 * LUZP6 NA 0 NA 1.444 1 NA NA NA NA NA LTS-004 chr7 135635283 138434095 2798813 * c(LOC100130880, MIR4468, CHRM2, SVOPL, LOC349160, ATP6V0A4, MIR490, PTN, CREB3L2, AKR1D1, LUZP6, TRIM24, DGKI) 0.369522324425578 16 0.0425934267229111 1.4475427128331 1059 0.363753295969041 6 4 2 -6.77296605084928 LTS-004 chr7 138434096 138437394 3299 * ATP6V0A4 NA 0 NA 1.237 1 NA NA NA NA NA LTS-004 chr7 138437395 141957504 3520110 * c(LOC100129148, JHDM1D-AS1, NDUFB2-AS1, MOXD2P, TMEM178B, C7orf55-LUC7L2, OR9A4, PRSS37, PRSS58, CLEC2L, FMC1, TMEM213, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, KIAA1549, PARP12, BRAF, SSBP1, TBXAS1, TTC26, KDM7A, SLC37A3, MGAM, ADCK2, ZC3HAV1L, MGAM2) 0.369022692912695 64 0.0956196530821753 1.30747563259195 4060 0.345456140337327 5 3 2 -6.91712939047453 LTS-004 chr7 141957505 142008477 50973 * c(PRSS58, NA) 0.32 1 NA 1.33951232786596 19 0.376658445803783 5 5 0 -5.76464588871994 LTS-004 chr7 142008478 142470646 462169 * c(MTRNR2L6, PRSS1) 0.255570336377277 54 0.10946997169546 1.46212944657796 423 0.573408817882649 6 5 1 -6.73594570245741 LTS-004 chr7 142470647 142498833 28187 * PRSS3P2 0.379 1 NA 1.29105375784618 35 0.313142851392382 5 5 0 -5.76441259379209 LTS-004 chr7 142498834 143305591 806758 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.40984210931867 15 0.0482470823198766 1.27322864491117 1328 0.250755460550705 5 3 2 -6.77711148323061 LTS-004 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.10919974254755 39 0.277329955438528 0 NA NA -5.98138654559622 LTS-004 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.867 1 NA NA NA NA NA LTS-004 chr7 143400289 143956845 556557 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A7, OR2A2, ARHGEF35, ARHGEF34P, TCAF1) 0.373306579914421 13 0.0704703974948128 1.73985239600947 327 0.505033639249327 9 6 3 -6.76028592063218 LTS-004 chr7 143956846 143969485 12640 * ARHGEF34P NA 0 NA 1.274 1 NA NA NA NA NA LTS-004 chr7 143969486 143981556 12071 * ARHGEF34P NA 0 NA 0.955925440849074 43 0.785891435783092 3 NA NA -5.76441099425133 LTS-004 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 1.764 1 NA NA NA NA NA LTS-004 chr7 143982346 153418603 9436258 * c(LINC01003, WDR86-AS1, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, GALNTL5, GIMAP7, ZNF467, GIMAP1, C7orf33, EZH2, FABP5P3, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, WDR86, KCNH2, ATP6V0E2-AS1, GIMAP6, NA NA NA NA NA NA NA NA NA LTS-004 NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, ARHGEF34P, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.448029855960748 135 0.0682027494748669 1.66677380389456 6487 0.459225433565744 7 4 3 -6.77721416846549 LTS-004 NA NA NA NA LTS-004 chr7 153418604 153418616 13 * character(0) NA 0 NA 2.516 1 NA NA NA NA NA LTS-004 chr7 153418617 156685590 3266974 * c(HTR5A-AS1, PAXIP1-AS2, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, HTR5A, INSIG1, LMBR1, LINC00244, SHH) 0.418635432351892 52 0.0485982817229718 1.95382126992734 1666 0.505547085993141 9 5 4 -6.79759558264757 LTS-004 chr7 156685591 156761818 76228 * c(LMBR1, NOM1) 0.352 1 NA 1.84707123939144 89 0.34814171867491 8 8 0 -5.76450391004259 LTS-004 chr7 156761819 156971581 209763 * c(MNX1, NOM1, MNX1-AS1, UBE3C) 0.327567856270917 16 0.123736750132422 2.1216560271465 166 0.927406151678754 10 7 3 -6.73824454755153 LTS-004 chr7 156971582 156981672 10091 * UBE3C 0.405 1 NA 2.13995253722368 19 0.403367745378452 10 10 0 -5.7644157250043 LTS-004 chr7 156981673 158937585 1955913 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2, UBE3C) 0.424071625860222 46 0.0461420878432197 1.91673082910222 1231 0.884912566260475 9 5 4 -6.76457539828443 LTS-004 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 1.891 2 0 0 NA NA -Inf LTS-004 chr8 182757 195254 12498 * ZNF596 0.263 1 NA 0.656781490293333 29 0.170483657105018 1 1 0 -5.76654886312084 LTS-004 chr8 195255 7694092 7498838 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, DEFB107A, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, FAM90A7P, FAM90A10P, DEFA8P, DEFA9P, DEFA10P, DEFB107B, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.309930250190932 75 0.0618797875570699 0.797692522562776 2355 0.281134968168419 2 2 0 -6.97095963346875 LTS-004 chr8 7694093 7694119 27 * character(0) NA 0 NA 0.873 1 NA NA NA NA NA LTS-004 chr8 7694120 8175394 481275 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3, SPAG11A) 0.390500748371979 3 0.0836799458253489 0.366070422639592 40 0.553301649540841 0 0 0 -6.94545480024225 LTS-004 chr8 8175395 21549048 13373654 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, FDFT1, FGL1, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, LPL, MIR124-1, ASAH1, MSR1, MSRA, MIR383, PCM1, NA NA NA NA NA NA NA NA NA LTS-004 ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, NAT1, ERI1, MTMR7, LONRF1, MFHAS1, RP1L1) 0.26457878026656 184 0.0659477283520222 0.800317900512504 5909 1.32895411601753 2 2 0 -6.75318867076095 LTS-004 NA NA NA NA LTS-004 chr8 21549049 21549051 3 * character(0) NA 0 NA 0.724 1 NA NA NA NA NA LTS-004 chr8 21549052 28197067 6648016 * c(MIR4287, MIR3622A, MIR3622B, LOC100507156, SORBS3, NPM2, PNMA2, ADAM28, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, DPYSL2, EGR3, R3HCC1, LGI3, DMTN, EPHX2, PTK2B, XPO7, TRIM35, RHOBTB2, SLC39A14, LOC254896, GFRA2, ADAMDEC1, GNRH1, LOC286059, SCARA5, LOC389641, NUGGC, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2R2A, CCDC25, PPP3CC, HR, PBK, NA NA NA NA NA NA NA NA NA LTS-004 BIN3, CCAR2, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, POLR3D, BNIP3L, STC1, NUDT18, DOCK5, BIN3-IT1, REEP4, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, PHYHIP) 0.27294958390696 124 0.0643829351564941 0.755778820417304 6873 0.54079229510858 2 2 0 -6.74111871887977 LTS-004 NA NA NA NA LTS-004 chr8 28197068 28203073 6006 * PNOC NA 0 NA 1.595 1 NA NA NA NA NA LTS-004 chr8 28203074 28286174 83101 * c(FBXO16, ZNF395) 0.17719090795809 3 0.0528425333735366 1.09127644425698 129 0.277079199421281 4 4 0 -6.76685085308468 LTS-004 chr8 28286175 28286238 64 * c(FBXO16, ZNF395) NA 0 NA 0.753 1 NA NA NA NA NA LTS-004 chr8 28286239 28984042 697804 * c(MIR4288, FBXO16, EXTL3, KIF13B, INTS9, ZNF395, HMBOX1, FZD3) 0.247382694511972 6 0.012225656083281 0.770258619748866 854 0.216531835629927 3 3 0 -8.68611058151446 LTS-004 chr8 28984043 29927577 943535 * c(MIR3148, MIR548O2, DUSP4, KIF13B, FAM183CP, SARAF, LINC00589) NA 0 NA 0.741590197312546 313 0.180104483535974 2 NA NA -5.79559369907365 LTS-004 chr8 29927578 29931380 3803 * c(MIR548O2, SARAF) NA 0 NA 1.219 1 NA NA NA NA NA LTS-004 chr8 29931381 29989564 58184 * c(MIR548O2, LEPROTL1, SARAF, MBOAT4) 0.493 1 NA 1.08456318201048 113 0.180502461890191 4 4 0 -5.76563455174692 LTS-004 chr8 29989565 39142479 9152915 * c(RBPMS-AS1, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, LEPROTL1, ADGRA2, LSM1, RNF5P1, GSR, GTF2E2, PURG, NRG1, C8orf86, WHSC1L1, PPP2CB, BRF2, TEX15, PLEKHA2, MBOAT4, STAR, TACC1, LOC728024, WRN, DUSP26, RNF122, UBXN8, ZNF703, TTI2, RAB11FIP1, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ASH2L, BAG4) 0.445315891513193 81 0.0609820885462017 1.09260508547046 4647 0.263856883190328 4 2 2 -6.79509499392714 LTS-004 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.843 1 NA NA NA NA NA LTS-004 chr8 39311551 39349526 37976 * ADAM3A 0.438 1 NA 2.01455274977866 58 0.623266490329243 9 9 0 -5.76441739536575 LTS-004 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.933 1 NA NA NA NA NA LTS-004 chr8 39442068 42710074 3268007 * c(AP3M2, CHRNB3, SMIM19, GPAT4, NKX6-3, IDO2, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, GINS4, ADAM18, CHRNA6) 0.434347274268069 43 0.101437661221384 1.10576911309583 2435 0.284439607938192 4 2 2 -6.73908359768042 LTS-004 chr8 42710075 43212050 501976 * c(MIR4469, HGSNAT, FNTA, POTEA, RNF170, POMK, HOOK3) NA 0 NA 1.12236581611108 507 0.280172866916827 4 NA NA -5.76441092398173 LTS-004 chr8 47752736 48694956 942221 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0.468 1 NA 1.06050692038548 331 0.225360829208567 4 4 0 -5.79941059674867 LTS-004 chr8 48694957 57307892 8612936 * c(SBF1P1, LYPLA1, XKR4, PCMTD1, TMEM68, PXDNL, SDR16C5, SNORD54, NPBWR1, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, OPRK1, ATP6V1H, PLAG1, SNTG1, PRKDC, RP1, RPS20, SOX17, SNAI2, TCEA1, UBE2V2, CHCHD7, EFCAB1, RGS20, TGS1, ST18, RB1CC1) 0.430071280649995 39 0.0895960871880363 1.10643050774285 3263 0.283535781397423 4 2 2 -6.75062422001353 LTS-004 chr8 57307893 57335843 27951 * character(0) NA 0 NA 1.569 1 NA NA NA NA NA LTS-004 chr8 57335844 67973682 10637839 * c(TCF24, MIR124-2HG, LOC100130298, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, COPS5, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, MIR124-2, ASPH, MYBL1, PDE7A, PENK, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, SDCBP, SNHG6, SNORD87, UG0898H09, TTPA, CA8, NA NA NA NA NA NA NA NA NA LTS-004 VCPIP1, NSMAF, TRIM55, DNAJC5B, GGH, FAM110B, CYP7B1, MTFR1, TOX) 0.375859585073252 56 0.0912163974778174 1.39332731114352 3623 0.366774832874616 6 4 2 -6.86755255433932 LTS-004 NA NA NA NA LTS-004 chr8 67973683 72959560 4985878 * c(MSC-AS1, LINC01592, NCOA2, ARFGEF1, COPS5, C8orf34, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, CSPP1, PREX2, SLCO5A1, TRPA1, MSC) 0.380831673944822 46 0.0520764209905827 1.48007908726215 2275 0.336597451644533 6 4 2 -6.73436922395849 LTS-004 chr8 72959561 72962998 3438 * c(MSC-AS1, TRPA1) NA 0 NA 1.17 1 NA NA NA NA NA LTS-004 chr8 72962999 74891394 1928396 * c(STAU2-AS1, C8orf89, MSC-AS1, RDH10, SBSPON, STAU2, LOC392232, TMEM70, UBE2W, RPL7, TCEB1, TERF1, TRPA1, KCNB2) 0.327453130875935 18 0.0965273505891709 1.34368297448235 969 0.368816624533987 5 4 1 -6.79771302850847 LTS-004 chr8 74891395 74893431 2037 * TMEM70 NA 0 NA 1.726 1 NA NA NA NA NA LTS-004 chr8 74893432 79516759 4623328 * c(ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, LY96, HNF4G, MIR2052HG, PI15, GDAP1, TMEM70, PKIA, JPH1, PEX2, ZFHX4, CRISPLD1) 0.361203101196869 6 0.0478306038710224 1.4819752902967 1066 1.25762794044293 6 4 2 -6.82557024264272 LTS-004 chr8 79516760 79717789 201030 * c(LOC101241902, IL7, ZC2HC1A, PKIA) NA 0 NA 1.54676152206228 123 0.308561024819378 6 NA NA -5.76768896245278 LTS-004 chr8 80523059 80678865 155807 * c(STMN2, HEY1) 0.179 1 NA 1.06169940737401 105 0.233994778204784 4 4 0 -5.76959190291548 LTS-004 chr8 80678866 87544906 6866041 * c(REXO1L2P, MIR5708, WWP1, RALYL, SLC7A13, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IMPA1, CA13, C8orf59, RMDN1, PMP2, PAG1, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, CA1, CA2, CA3, ZFAND1, LRRCC1, PSKH2, CPNE3, CHMP4C) 0.188131638910731 42 0.0479189210700291 1.12813872475019 2313 0.320127782915233 4 4 0 -6.73490853490287 LTS-004 chr8 87544907 87549735 4829 * CPNE3 NA 0 NA 1.373 1 NA NA NA NA NA LTS-004 chr8 87549736 89209548 1659813 * c(DCAF4L2, CNBD1, MMP16, CNGB3, CPNE3) 0.177814888084815 11 0.0402250487315372 1.26323874698883 651 0.304932421691129 5 5 0 -6.80794458627676 LTS-004 chr8 89209549 90926269 1716721 * c(MMP16, OSGIN2, RIPK2) 0.221 1 NA 0.756184986591088 99 0.171995948402133 2 2 0 -5.78259974020918 LTS-004 chr8 90926270 90947306 21037 * c(NBN, OSGIN2) 0.47 1 NA 0.758326320855904 129 0.148783599065136 2 2 0 -5.76463963649901 LTS-004 chr8 90947307 100974807 10027501 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, C8orf37, VPS13B, DECR1, TMEM64, ERICH5, RAD54B, KIAA1429, RGS22, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, NBN, MTERF3, OTUD6B, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, NA NA NA NA NA NA NA NA NA LTS-004 LINC01298, SDC2, NECAB1, LINC00535, STK3, MIR599, UQCRB, CALB1, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.275655303986959 60 0.0629939711042273 0.782186158448237 5113 0.191985693864331 2 2 0 -6.75248060676586 LTS-004 NA NA NA NA LTS-004 chr8 100974808 100974883 76 * RGS22 NA 0 NA 0.539 1 NA NA NA NA NA LTS-004 chr8 100974884 104063325 3088442 * c(MIR4471, MIR5680, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.250059600962879 39 0.0593709035095118 0.728584227834921 1764 0.18261292035847 2 2 0 -7.03125382883749 LTS-004 chr8 104063326 110464591 6401266 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, PKHD1L1, EMC2, RIMS2) 0.280293719943436 49 0.0645595622261329 0.816109321406485 2274 0.565098247121277 2 2 0 -6.77111750329088 LTS-004 chr8 110464592 110464943 352 * PKHD1L1 NA 0 NA 1.092 1 NA NA NA NA NA LTS-004 chr8 110464944 110511026 46083 * PKHD1L1 0.224491454502435 7 0.0480099196099346 1.16437453065073 153 0.276005908650353 3 3 0 -6.7483660101875 LTS-004 chr8 110511027 116617276 6106250 * c(MIR2053, CSMD3, KCNV1, SYBU, TRPS1, EBAG9, PKHD1L1) 0.285524707447642 32 0.0809868505356112 0.828406150739696 1067 0.257422921570877 2 2 0 -6.99074222621747 LTS-004 chr8 116617277 116631341 14065 * TRPS1 NA 0 NA 0.703 1 NA NA NA NA NA LTS-004 chr8 116631342 125499363 8868022 * c(FAM83A-AS1, MIR3610, ZHX1-C8orf76, MIR4663, LINC00536, COLEC10, RNF139, ZHX1, MAL2, FBXO32, TMEM65, FAM91A1, SLC30A8, EXT1, ZHX2, MTBP, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, NOV, TNFRSF11B, ENPP2, TRMT12, WDYHV1, SAMD12-AS1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, TAF2, TRPS1, COL14A1, DSCC1, DERL1, UTP23, C8orf76, FAM83A, EIF3H, MED30, TBC1D31) 0.276856501122623 56 0.0527632515514891 0.778257015824554 3694 0.223995549087196 2 2 0 -6.7374316338716 LTS-004 chr8 125499364 125570144 70781 * c(RNF139, NDUFB9, TATDN1, MTSS1) 0.032 1 NA 0.742550635600285 203 0.192239527278893 2 2 0 -5.76634932926165 LTS-004 chr8 125570145 126370054 799910 * c(ZNF572, LINC00964, NSMCE2, NDUFB9, SQLE, MTSS1, KIAA0196) 0.250191127771499 6 0.0320712747901711 0.741559833058981 431 0.148878627817991 2 2 0 -7.11102628786201 LTS-004 chr8 126370055 126378977 8923 * NSMCE2 NA 0 NA 1.194 1 NA NA NA NA NA LTS-004 chr8 126378978 146280802 19901825 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, LINC00861, CCDC166, LOC100133669, LOC100288181, MIR1205, MIR1206, MIR1207, MIR1204, MIR1234, MIR1208, ASAP1-IT2, MIR4472-1, MIR4664, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, PTP4A3, MFSD3, ADCY8, RHPN1, TOP1MT, LYPD2, TMEM71, CYC1, FAM84B, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, EFR3A, ARC, BOP1, SCRIB, LRRC6, FBXL6, OPLAH, NA NA NA NA NA NA NA NA NA LTS-004 AGO2, GLI4, GML, GPR20, NSMCE2, ZNF707, BREA2, FAM83H, LINC01591, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, ASAP1-IT1, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, KCNQ3, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, C8orf82, LRRC24, MYC, TONSL, CYHR1, ASAP1, FAM135B, PHF20L1, VPS28, HGH1, KCNK9, THEM6, FAM49B, PLEC, CHRAC1, EXOSC4, POU5F1B, LY6K, SLC39A4, GSDMC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, PVT1, ZNF250, ZFAT-AS1, RPL8, LINC00051, MROH6, SCX, ST3GAL1, SLA, PYCRL, C8orf33, LYNX1, TG, MIR661, TSTA3, CASC8, MROH1, LINC00977, OC90, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, WISP1, FOXH1, ZNF251, KIFC2, NAPRT, HPYR1, RECQL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LRRC14, ZNF623) 0.175316790311121 342 0.0459223859503714 1.11798179725687 11857 0.350677552347002 4 4 0 -6.79231393696584 LTS-004 NA NA NA NA LTS-004 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.763989795062718 3 0.0640858798800484 2 NA NA -5.76441250885893 LTS-004 chr9 14732 215086 200355 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0.466 1 NA 0.995835461496444 47 0.427782984872191 3 3 0 -5.76601696040645 LTS-004 chr9 215087 34725313 34510227 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, SNORD121B, RCL1, TOPORS, SIGMAR1, CDKN2A, CDKN2B, DMRT2, RRAGA, CCL27, PSIP1, INSL6, PTENP1, DCTN3, UHRF2, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf66, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FAM219A, KDM4C, MLANA, NA NA NA NA NA NA NA NA NA LTS-004 KANK1, DDX58, SLC24A2, DCAF12, GALT, FAM205A, B4GALT1, RANBP6, DNAI1, SPINK4, GLDC, TUSC1, LURAP1L, CD274, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, C9orf24, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.442945184737957 280 0.0796765025517798 1.11194829455245 13115 0.285973629351513 4 2 2 -6.75476418791597 LTS-004 NA NA NA NA LTS-004 chr9 34725314 34726274 961 * FAM205A NA 0 NA 0.566270544816945 46 0.519197379927587 1 NA NA -5.76441712892385 LTS-004 chr9 34726275 34833987 107713 * c(FAM205A, FAM205BP) NA 0 NA 1.16140839696574 98 0.252465069044678 4 NA NA -5.76562712008557 LTS-004 chr9 34833988 34835078 1091 * FAM205BP 0.44990225112985 2 0.0261629509039022 0.675943650228258 54 0.605708793239991 2 1 1 -6.84505673378319 LTS-004 chr9 34835079 43861081 9026003 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, ZNF658, SPAG8, FBXO10, SIT1, LOC286297, STOML2, IGFBPL1, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, AQP7P3, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, NA, LOC642929, LINC01189, NA NA NA NA NA NA NA NA NA LTS-004 POLR1E, SHB, HRCT1, NA, FGF7P3, MSMP, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.450525851556593 53 0.0691587853472802 1.09886454135932 4922 0.24927783521664 4 2 2 -6.7882809216785 LTS-004 NA NA NA NA LTS-004 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.15665212389081 8 0.459144779531934 4 NA NA -5.76524542419133 LTS-004 chr9 65602571 66457106 854536 * LOC286297 0.212 1 NA 1.26009482798429 3 0.344872923456356 5 5 0 -5.76779948919372 LTS-004 chr9 66457107 70731679 4274573 * c(FRG1HP, FAM27B, LOC100133920, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.318087749251225 23 0.128430645992456 1.22744346775998 73 0.604691054745725 5 4 1 -6.76759196148008 LTS-004 chr9 70731680 70971798 240119 * c(FOXD4L3, PGM5-AS1) 0.381 1 NA 0.756977714514537 6 0.172998747586989 2 2 0 -5.76670603961342 LTS-004 chr9 70971799 74979391 4007593 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf57, C9orf85, C9orf135, TMEM252, SMC5, TMEM2, FXN, MAMDC2, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PGM5, PRKACG, PGM5-AS1, KLF9, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.451036157485378 47 0.0399238405401868 1.10908641688563 2271 0.260326733630258 4 2 2 -6.79632840949254 LTS-004 chr9 74979392 75807347 827956 * c(TMC1, ALDH1A1, ANXA1, ZFAND5) NA 0 NA 1.14132741021043 269 0.222665369888963 4 NA NA -5.76737520999469 LTS-004 chr9 77112294 77301304 189011 * RORB 0.32 1 NA 0.795798547457596 81 0.087299311297893 2 2 0 -5.77619454154583 LTS-004 chr9 77301305 97078227 19776923 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, VPS13A-AS1, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, CARNMT1, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, SUSD3, FAM120A, VPS13A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, NA NA NA NA NA NA NA NA NA LTS-004 SPATA31E1, LOC286238, MIR4290HG, PSAT1, UBQLN1, HNRNPK, IARS, LINC01501, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR7-1, IDNK, LOC440173, SPATA31C1, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, PCA3, PCSK5, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, RFK, KIF27, BARX1, NAA35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, TLE1, TLE4, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, FGD3, GNA14) 0.270002966451142 178 0.0644800121529481 0.76708201201364 9607 0.196808300608503 2 2 0 -6.75912513333783 LTS-004 NA NA NA NA LTS-004 chr9 97078228 97078318 91 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-004 chr9 97078319 97081347 3029 * NUTM2F 0.364139444691551 5 0.0518044399641575 1.43578369112552 39 3.18969206713296 20 13 7 -6.73365514379111 LTS-004 chr9 97081348 97081922 575 * NUTM2F NA 0 NA 0.469 1 NA NA NA NA NA LTS-004 chr9 97081923 98776725 1694803 * c(LINC00476, LOC100132077, MIR2278, MIR3074, LOC100507346, FANCC, FBP1, ERCC6L2, MIR23B, NUTM2F, PTCH1, MFSD14B, C9orf3, FBP2) 0.279294278752611 13 0.072529127658992 0.767009713196306 1031 0.218431136591115 2 2 0 -6.7367306765773 LTS-004 chr9 98776726 98877053 100328 * c(LINC00092, LOC158434, LOC158435) NA 0 NA 0.663208032375621 27 0.135782893996241 1 NA NA -5.79740483407993 LTS-004 chr9 98877054 98997494 120441 * LOC158434 NA 0 NA 1.108 1 NA NA NA NA NA LTS-004 chr9 98997495 99060612 63118 * HSD17B3 0.489 1 NA 1.17603826256975 49 5.91612071753001 4 4 0 -5.76441254169718 LTS-004 chr9 99060613 99700859 640247 * c(LOC100132781, SLC35D2, ZNF782, AAED1, ZNF367, ZNF510, HABP4, HSD17B3, LOC441454, LOC441455, NUTM2G, CDC14B) 0.424053995732961 14 0.104141730348598 1.06474056511127 708 0.222247473370038 4 2 2 -6.76570154540172 LTS-004 chr9 99700860 99704019 3160 * NUTM2G 0.241 1 NA 0.739757053944188 42 0.344862144014074 2 2 0 -5.7644421996811 LTS-004 chr9 99704020 99704089 70 * NUTM2G NA 0 NA 1.391 1 NA NA NA NA NA LTS-004 chr9 99704090 99711224 7135 * c(NUTM2G, MFSD14C) 0.273011625263722 4 0.183447313053821 1.12246522363519 18 0.165768402896007 6 5 1 -6.74606854990951 LTS-004 chr9 99711225 99795125 83901 * c(CTSV, MFSD14C) 0.5 1 NA 0.990753001498082 31 0.303207360111536 3 3 0 -5.76548683143467 LTS-004 chr9 99795126 117085526 17290401 * c(FAM225B, MIR548Q, MIR3134, CCDC180, LOC100499484, MSANTD3-TMEFF1, MIR4668, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, AKAP2, KIF12, PALM2, WDR31, ZNF618, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CTSV, CYLC2, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF883, ABCA1, LPAR1, ANKS6, ALAD, FKTN, ALDOB, PTGR1, FOXE1, ERP44, FKBP15, KIAA0368, TDRD7, SLC44A1, TMEM245, FRRS1L, NA NA NA NA NA NA NA NA NA LTS-004 CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, INVS, GNG10, FAM225A, LOC286359, OR13C9, OR13D1, NA, GAS2L1P2, MURC, OR13C2, C9orf152, SNX30, MIR32, STX17-AS1, PALM2-AKAP2, MUSK, NCBP1, ORM1, TRMO, POLE3, NANS, MRPL50, EPB41L4B, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, STX17, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RGS3, MIR455, SUSD1, LRRC37A5P, TAL2, TGFBR1, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, SVEP1, NR4A3, HDHD3, FSD1L, HSDL2, TMEM246, IKBKAP, COL27A1, ALG2, TMEFF1, CTNNAL1, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, PTBP3) 0.447514823972605 249 0.0671243784353661 1.10829486351382 11974 0.687094968207193 4 2 2 -6.74709899106655 LTS-004 NA NA NA NA LTS-004 chr9 117085527 117085561 35 * ORM1 NA 0 NA 0.388 1 NA NA NA NA NA LTS-004 chr9 117085562 117089820 4259 * ORM1 0.40411281050559 3 0.0720717235351933 0.368963931778625 44 0.653696803647812 3 2 1 -6.73834714923518 LTS-004 chr9 117089821 117089842 22 * ORM1 NA 0 NA 0.894 1 NA NA NA NA NA LTS-004 chr9 117089843 121976471 4886629 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.45112402086938 68 0.066263713441459 1.15112247249205 1653 0.282698630721016 4 2 2 -6.77898557500218 LTS-004 chr9 121976472 122000943 24472 * BRINP1 NA 0 NA 1.09 1 NA NA NA NA NA LTS-004 chr9 122000944 135937469 13936526 * c(LOC100129034, LOC100272217, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, POMT1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, AK8, OR1Q1, TTLL11, TTC16, BRINP1, OLFML2A, DNM1, TOR1A, MEGF9, ENDOG, ENG, AK1, NAIF1, STOM, NA NA NA NA NA NA NA NA NA LTS-004 DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, BARHL1, SH3GLB2, PSMB7, PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SNORD90, MIR601, TRAF1, TSC1, C5, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C5, GTF3C4, LHX2, MED27, PTGES, RALGPS1) 0.448811694512317 271 0.0747407661441949 1.08425137760614 16643 0.372367178006102 4 2 2 -6.81374485309806 LTS-004 NA NA NA NA LTS-004 chr9 135937470 135961771 24302 * c(CEL, CELP) 0.318 1 NA 2.01048718817834 62 0.682303883256056 9 9 0 -5.76441273159339 LTS-004 chr9 135961772 135973072 11301 * CELP NA 0 NA 1.092 1 NA NA NA NA NA LTS-004 chr9 135973073 137024067 1050995 * c(WDR5, ADAMTS13, CACFD1, SLC2A6, DBH-AS1, DBH, STKLD1, SARDH, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, TMEM8C, REXO4, RALGDS, RPL7A, FAM163B, SURF1, SURF2, SURF4, MED22, SURF6, VAV2, BRD3, ADAMTSL2) 0.45879834908488 38 0.0378292280897494 1.10609768249377 1917 0.257048251155033 4 2 2 -6.90301870367221 LTS-004 chr9 137024068 137024144 77 * WDR5 NA 0 NA 1.28884388910533 2 0.258801081914276 5 NA NA -5.76441015516572 LTS-004 chr9 137024145 137271318 247174 * c(RNU6ATAC, MIR4669, WDR5, RXRA) 0.277 1 NA 1.37121858275149 35 0.257318548290087 5 5 0 -5.77154280440501 LTS-004 chr9 137271319 141070283 3798965 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, TUBB4B, UBAC1, OLFM1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, FCN1, FCN2, PMPCA, FUT7, NELFB, NSMF, NA NA NA NA NA NA NA NA NA LTS-004 GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, OBP2A, GLT6D1, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, LCN10, STPG3, NRARP, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, RXRA, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, PPP1R26, SEC16A) 0.365115831297534 155 0.0692164283285808 1.40204839112555 7533 1.10521103311854 6 4 2 -6.76527616987585 LTS-004 NA NA NA NA LTS-004 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.674757990304496 5 0.312441994616601 1 NA NA -5.76453651221309 LTS-004 chr10 94832 323283 228452 * c(ZMYND11, DIP2C, TUBB8) 0.294 1 NA 0.787540637203772 199 0.186107172213382 2 2 0 -5.76565504560888 LTS-004 chr10 323284 14013672 13690389 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, GATA3-AS1, PRR26, PRKCQ-AS1, CELF2-AS2, NA NA NA NA NA NA NA NA NA LTS-004 ATP5C1, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, ADARB2-AS1, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, CCDC3, TAF3, FBXO18, RBM17, PRPF18, AKR1C3, CDC123, IDI2, USP6NL) 0.252468677504963 135 0.0595688238604675 0.768180884404709 6351 0.215834038880394 2 2 0 -6.82671495707818 LTS-004 NA NA NA NA LTS-004 chr10 14013673 17908619 3894947 * c(ST8SIA6-AS1, PPIAP30, MIR1265, RPP38, TRDMT1, C10orf111, FAM171A1, ST8SIA6, C1QL3, ACBD7, MRC1, CDNF, HSPA14, OLAH, FRMD4A, NA, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, ITGA8, HACD1, PTER, NMT2) 0.282492967985722 44 0.0701177656309901 0.715923867981406 2295 0.218556699922871 2 2 0 -7.02091077683687 LTS-004 chr10 17908620 17949528 40909 * c(MRC1, NA, TMEM236) NA 0 NA 0.314 1 NA NA NA NA NA LTS-004 chr10 17949529 18087552 138024 * c(MRC1, NA, TMEM236) NA 0 NA 0.338862600063226 40 0.309216204131407 0 NA NA -5.80900093174384 LTS-004 chr10 18087553 21786102 3698550 * c(NEBL-AS1, SLC39A12-AS1, MIR1915, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, C10orf113, CASC10, MRC1, NA, TMEM236, CACNB2, PLXDC2) 0.281357442592942 26 0.0341775454850786 0.821931247240818 1243 0.360168765244403 2 2 0 -6.81560851077018 LTS-004 chr10 21786103 21786183 81 * CASC10 0.421 1 NA 0.232 1 NA NA NA NA NA LTS-004 chr10 21786184 36812536 15026353 * c(ABI1, MIR938, GPR158-AS1, LOC100130992, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, ENKUR, ARMC3, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, ITGB1, PTCHD3, KIF5B, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, NA NA NA NA NA NA NA NA NA LTS-004 PARD3, PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ACBD5, ARHGAP12, SPAG6) 0.27855779363676 125 0.0623648391426637 0.761991626480244 6502 0.354909307694045 2 2 0 -6.75155629585301 LTS-004 NA NA NA NA LTS-004 chr10 36812537 36812552 16 * character(0) NA 0 NA 0.888 1 NA NA NA NA NA LTS-004 chr10 36812553 38408804 1596252 * c(MTRNR2L7, ZNF33BP1, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.320585422987296 3 0.0466940395910798 0.875581126357092 495 0.196109518520663 2 2 0 -7.6151029992689 LTS-004 chr10 38408805 38740384 331580 * c(LOC100129055, HSD17B7P2, SEPT7P9, LINC00999, ZNF37A) NA 0 NA 0.867104897861806 129 0.221736752977769 3 NA NA -5.79626119025935 LTS-004 chr10 42379879 47756145 5376267 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, FXYD4, NPY4R, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, NA NA NA NA NA NA NA NA NA LTS-004 LINC00839, ZFAND4, GPRIN2, BMS1) 0.419470778186469 64 0.0640160395792547 0.905201767108148 2090 0.262536634112833 3 2 1 -6.86502198858282 LTS-004 NA NA NA NA LTS-004 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.424 1 NA NA NA NA NA LTS-004 chr10 47903105 48033122 130018 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.311272068314056 41 0.198754055028429 0 NA NA -5.95151520300408 LTS-004 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.725 1 NA NA NA NA NA LTS-004 chr10 48054940 49732160 1677221 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.385 1 NA 0.991065373912802 660 0.288350310010126 3 3 0 -5.78845646301418 LTS-004 chr10 49732161 49732291 131 * c(NA, ARHGAP22) NA 0 NA 0.545 1 NA NA NA NA NA LTS-004 chr10 49732292 53564412 3832121 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MSMB, LRRC18, NA, OGDHL, PRKG1, ASAH2, WDFY4, ARHGAP22, DRGX, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.378257502472502 54 0.093819145942355 0.899845946539765 2155 0.278694715571463 3 2 1 -6.85663089422547 LTS-004 chr10 53564413 61897102 8332690 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, SLC16A9, FAM13C, DKK1, IPMK, LINC01553, ANK3, MBL2, CISD1, PRKG1, PCDH15, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL) 0.390601741075891 57 0.0598716358717121 0.97729168979275 2154 0.265679241070612 3 2 1 -6.82892461322066 LTS-004 chr10 61897103 61898282 1180 * ANK3 NA 0 NA 0.706 1 NA NA NA NA NA LTS-004 chr10 61898283 72184002 10285720 * c(MIR1296, MIR548AV, COL13A1, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, STOX1, C10orf35, TYSND1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, ANK3, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, NEUROG3, PPA1, LRRC20, H2AFY2, SRGN, RUFY2, CCAR1, DNAJC12, SAR1A, PBLD, NPFFR1, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, AIFM2, ADO, JMJD1C-AS1, DDX21, VPS26A, NA NA NA NA NA NA NA NA NA LTS-004 CDK1, RHOBTB1) 0.401169433575789 52 0.0588405442963609 0.883793507451916 5068 0.222294435964212 3 2 1 -7.28982575125301 LTS-004 NA NA NA NA LTS-004 chr10 72184003 72358847 174845 * c(EIF4EBP2, PALD1, NODAL, PRF1) 0.354 1 NA 0.914157288100758 303 0.212587766064586 3 3 0 -5.76743624853877 LTS-004 chr10 72358848 84745987 12387140 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, MIR1256, MIR4676, PPIF, MICU1, NRG3, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, ADAMTS14, SAMD8, DYDC1, EIF5AL1, USP54, FUT11, OIT3, TMEM254-AS1, PLAC9, ZCCHC24, UNC5B, TBATA, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, AP3M1, GLUD1P3, ZMIZ1-AS1, ANXA7, ANXA11, FAM149B1, DUPD1, KCNMA1, SH2D4B, C10orf105, C10orf55, LINC00595, DNAJC9-AS1, MAT1A, LINC00857, NA NA NA NA NA NA NA NA NA LTS-004 P4HA1, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, SLC29A3, PPP3CB, PRF1, PSAP, ZMIZ1, MYOZ1, RPS24, CDH23, C10orf54, LOC642361, SFTPD, BEND3P3, SFTPA1, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, PLA2G12B, ZNF503, NDST2, MBL1P, SGPL1, MCU, DLG5, CHST3, SEC24C, SPOCK2) 0.343481075175701 145 0.0898131692124528 0.890392065037755 7625 0.216891372297162 3 2 1 -7.55450450662046 LTS-004 NA NA NA NA LTS-004 chr10 84745988 84746226 239 * NRG3 0 1 NA 1.30925105196443 7 0.980402079809727 5 5 0 -5.76441015017023 LTS-004 chr10 84746227 85903882 1157656 * c(NRG3, GHITM) 0.345 1 NA 0.929360491065333 28 0.215616747982577 3 3 0 -5.77015653227119 LTS-004 chr10 85903883 85904635 753 * GHITM NA 0 NA 0.648 1 NA NA NA NA NA LTS-004 chr10 85904636 98128025 12223390 * c(C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, FAS-AS1, MIR3157, GRID1-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, SORBS1, ADIRF, LDB3, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, LINC00858, DNTT, CPEB3, WAPL, TBC1D12, IFIT5, LRIT1, TCTN3, MYOF, PIPSL, ANKRD1, GHITM, GLUD1, FLJ37201, GRID1, BLNK, HELLS, HHEX, NA NA NA NA NA NA NA NA NA LTS-004 HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, C10orf99, SLC16A12, CC2D2B, LIPA, MIR107, LINC00863, IFIT1B, MIR346, PLCE1, PDE6C, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, PPP1R3C, CEP55, RNLS, PTEN, STAMBPL1, ALDH18A1, ACTA2, RBP4, RGR, FAM25A, NOC3L, LIPK, LIPN, LINC00865, BMPR1A, SNCG, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, MMRN2, TNKS2, PCGF5, ATAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LIPF, CH25H, BTAF1, PAPSS2, PDLIM1, LGI1, CDHR1, OPALIN, OPN4, ENTPD1, MINPP1, KIF20B, ZNF518A) 0.266126818645745 147 0.0680033690724209 0.772650320649721 8860 0.225300757774918 2 2 0 -6.74350524696015 LTS-004 NA NA NA NA LTS-004 chr10 98128026 98129859 1834 * TLL2 NA 0 NA 0.466 1 NA NA NA NA NA LTS-004 chr10 98129860 116856484 18726625 * c(TLX1NB, MIR936, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4483, MIR4482, MIR4685, MIR5692C2, ACTR1A, SMNDC1, NPM3, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, TRUB1, VTI1A, ADRA2A, NA NA NA NA NA NA NA NA NA LTS-004 ADRB1, CYP17A1, NKX2-3, CFAP58, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, RRP12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, ATRNL1, C10orf12, ANKRD2, CNNM1, PDCD4, R3HCC1L, POLL, GOT1, BLOC1S2, RBM20, PDCD4-AS1, HABP2, KCNIP2, TLX1, HPS1, VWA2, NHLRC2, GUCY2GP, ABLIM1, LBX1-AS1, GOLGA7B, ARL3, C10orf62, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, SUFU, ACSL5, PGAM1, PITX3, CNNM2, WBP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CCDC186, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, GPAM, FAM160B1, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, ZDHHC6, RPL13AP6, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, SHOC2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MARVELD1, CASP7, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, AFAP1L2, PYROXD2, USMG5, ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, SMC3, NEURL1, NOLC1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.269075990027368 247 0.0640028231969225 0.750348674308347 15128 0.184441563818223 2 2 0 -7.03323530338329 LTS-004 NA NA NA NA LTS-004 chr10 116856485 116881451 24967 * ATRNL1 NA 0 NA 0.872 1 NA NA NA NA NA LTS-004 chr10 116881452 119037652 2156201 * c(MIR3663, VAX1, PNLIPRP3, C10orf82, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.290550095603814 29 0.0559707215861726 0.821323374421939 1309 0.208742053083257 2 2 0 -6.88308553055906 LTS-004 chr10 119037653 119135042 97390 * c(PDZD8, SLC18A2) NA 0 NA 0.827500106584731 167 0.225564527430441 2 NA NA -5.76959693820961 LTS-004 chr10 119135043 119301972 166930 * c(EMX2OS, EMX2) NA 0 NA 1.055 1 NA NA NA NA NA LTS-004 chr10 119301973 119766381 464409 * c(EMX2OS, EMX2, RAB11FIP2) 0.196 1 NA 1.12897998997149 113 0.185574436610725 4 4 0 -5.76473425550642 LTS-004 chr10 119766382 121679137 1912756 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.182603816127021 28 0.0420520432158098 1.03150015996969 1519 0.999315151567201 4 4 0 -6.75805941568258 LTS-004 chr10 121679138 121680378 1241 * SEC23IP NA 0 NA 1.269 1 NA NA NA NA NA LTS-004 chr10 121680379 134693137 13012759 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, NA NA NA NA NA NA NA NA NA LTS-004 C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.203278489520337 171 0.0665781605482481 1.11540046596587 6470 0.352298550064489 4 4 0 -6.76005436219123 LTS-004 NA NA NA NA LTS-004 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.637 1 NA NA NA NA NA LTS-004 chr10 134694406 134756359 61954 * CFAP46 0.221391913904651 10 0.0414198020275327 0.54736995846374 175 0.117685869479752 3 3 0 -7.45262327347088 LTS-004 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.423 1 NA NA NA NA NA LTS-004 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.187808468247842 80 0.0525844468510691 1.11507250752965 1441 0.451236250580556 4 4 0 -6.73385277397152 LTS-004 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.061 1 NA NA NA NA NA LTS-004 chr11 193025 193096 72 * SCGB1C1 0.397 1 NA 0.295 1 NA NA NA NA NA LTS-004 chr11 193097 1011829 818733 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.28426695234086 109 0.0696534843572988 0.739637332138123 2915 0.238340127306152 2 2 0 -6.7610909828173 LTS-004 chr11 1011830 1013167 1338 * c(AP2A2, MUC6) 0.332 1 NA 0.856700501505389 17 0.108305633713661 3 3 0 -5.76510808685953 LTS-004 chr11 1013168 1016879 3712 * MUC6 0.313203217552238 2 0.096873629022557 0.865205894518524 40 0.176602341942249 5 4 1 -6.75848596354369 LTS-004 chr11 1016880 1018496 1617 * MUC6 0.278405010613737 38 0.0945657327438874 1.15773463075593 68 0.426723935284498 2 2 0 -6.73466954837467 LTS-004 chr11 1018497 1018580 84 * MUC6 NA 0 NA 0.785 1 NA NA NA NA NA LTS-004 chr11 1018581 4510270 3491690 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, DUSP8, TOLLIP-AS1, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR52K1, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, NA NA NA NA NA NA NA NA NA LTS-004 IGF2-AS, TOLLIP, KCNQ1DN, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.288681758748673 181 0.0812819483393704 0.77212615891993 4313 0.238001430550518 2 2 0 -6.75011866790338 LTS-004 NA NA NA NA LTS-004 chr11 4510271 4965285 455015 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, TRIM68, OR51G1, OR51G2, OR51E2) 0.279335661652359 26 0.0451919666108242 0.839805452062277 628 0.167922637788112 2 2 0 -6.80292545287719 LTS-004 chr11 4965286 4976270 10985 * c(OR51A4, OR51A2) 0.227 1 NA 0.484562642377224 45 0.219151029514748 0 0 0 -5.76672497325079 LTS-004 chr11 4976271 4976291 21 * OR51A2 0.477 1 NA 1.506 1 NA NA NA NA NA LTS-004 chr11 4976292 5777005 800714 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.270953684223612 55 0.0496593920508016 0.832615061732384 1225 0.269285796825879 2 2 0 -6.77250061935429 LTS-004 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.2 1 NA NA NA NA NA LTS-004 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.258549524635496 4 0.0352833766335744 1.38278887165546 51 0.678092001971159 10 8 2 -6.73604471447848 LTS-004 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.765 1 NA NA NA NA NA LTS-004 chr11 5817708 20101741 14284034 * c(LOC100126784, MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, MIR5691, NAV2-AS5, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, HPS5, PRKCDBP, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, SPTY2D1, TMEM86A, OR10A5, OR2AG1, DNHD1, LDHAL6A, C11orf42, OR56B4, EIF4G2, NA NA NA NA NA NA NA NA NA LTS-004 RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, MRGPRX1, SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, OR10A4, OLFML1, LOC283299, GTF2H1, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LDHA, LDHC, NAV2-AS4, LMO1, ARNTL, TMEM41B, LOC440028, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, RIC3, CALCB, E2F8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CSRP3, SBF2, FAM160A2, FAR1, BTBD10, PTPN5, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, NAV2, MICAL2, CTR9, TRIM66) 0.283711971698706 246 0.0624564093550093 0.768781521273099 13188 0.250911330505162 2 2 0 -6.75018385292545 LTS-004 NA NA NA NA LTS-004 chr11 20101742 21392456 1290715 * c(PRMT3, HTATIP2, DBX1, NELL1, NAV2, SLC6A5) 0.26708372123043 21 0.0685229193495904 0.841412284741841 607 0.22641381322811 2 2 0 -6.84555059574395 LTS-004 chr11 21392457 21392487 31 * NELL1 0.212 1 NA 1.523 1 NA NA NA NA NA LTS-004 chr11 21392488 22283767 891280 * c(ANO5, NELL1) 0 1 NA 1.23454778665563 109 0.426404030086417 5 5 0 -5.77132914174372 LTS-004 chr11 22283768 22400124 116357 * c(ANO5, SLC17A6) 0.491 1 NA 1.1634578057836 201 0.238061090345143 4 4 0 -5.76604286781115 LTS-004 chr11 22400125 31822992 9422868 * c(CCDC179, DCDC5, LINC00678, DNAJC24, ARL14EP, MUC15, SLC5A12, METTL15, IMMP1L, FANCF, FSHB, SVIP, GAS2, ELP4, LUZP2, DCDC1, KCNA4, FIBIN, BDNF-AS, PAX6, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, KIF18A, BBOX1, CCDC34) 0.45616689221594 35 0.0315147024512089 1.16566669269873 2602 0.274995086183235 4 2 2 -7.02380497453879 LTS-004 chr11 31822993 31823092 100 * PAX6 NA 0 NA 1.545 1 NA NA NA NA NA LTS-004 chr11 31823093 32456434 633342 * c(DKFZp686K1684, PAX6, RCN1, WT1) 0.400300841024198 9 0.0721626249830509 1.45074380210138 285 0.300107921161636 6 4 2 -6.78032066956868 LTS-004 chr11 32456435 47303275 14846841 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, EIF3M, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, NA NA NA NA NA NA NA NA NA LTS-004 CAPRIN1, MDK, CCDC73, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, C11orf49, ZNF408, QSER1, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.455952762269596 162 0.0490386141315708 1.09689066316245 7859 0.274327875293019 4 2 2 -6.86750931409463 LTS-004 NA NA NA NA LTS-004 chr11 47303276 47304508 1233 * MADD 0 1 NA 1.09684865914693 13 0.77990047030999 4 4 0 -5.76441075230669 LTS-004 chr11 47304509 47446300 141792 * c(MYBPC3, PSMC3, SPI1, MADD, SLC39A13) 0.456825157576471 6 0.0191911437908218 1.10598755596424 505 0.208156690280731 4 2 2 -7.23633685203236 LTS-004 chr11 47446301 47446632 332 * PSMC3 NA 0 NA 0.843 1 NA NA NA NA NA LTS-004 chr11 47446633 48328644 882012 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.39047154345295 17 0.125025997296562 1.03831307865005 1219 0.465892875733739 3 2 1 -6.76029830280076 LTS-004 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.976709321673291 4 0.0551505515233831 3 NA NA -5.76757905596327 LTS-004 chr11 48346420 48346423 4 * character(0) 0.344 1 NA 3.111 1 NA NA NA NA NA LTS-004 chr11 48346424 48347419 996 * OR4C3 0.307438155008273 36 0.0931728041252995 2.63631231022175 54 1.39099564924784 8 6 2 -6.73314419837495 LTS-004 chr11 48347420 48347442 23 * OR4C3 NA 0 NA 1.116 1 NA NA NA NA NA LTS-004 chr11 48347443 48387190 39748 * c(OR4C3, OR4C45) 0.338798110727514 40 0.0883043651097492 1.68523556995831 72 0.80616108006462 7 5 2 -6.73339432920023 LTS-004 chr11 48387191 48387201 11 * character(0) 0.34 1 NA 3.606 1 NA NA NA NA NA LTS-004 chr11 48387202 48387983 782 * character(0) 0.347135468268494 26 0.0313316993572865 2.39997813966691 49 1.19129237759316 4 3 1 -6.73742633762812 LTS-004 chr11 48387984 48387985 2 * character(0) NA 0 NA 1.109 1 NA NA NA NA NA LTS-004 chr11 48387986 48453787 65802 * character(0) 0.365283680982754 8 0.0453998112016213 1.72163729020097 14 0.911076600198124 9 6 3 -6.7362858937925 LTS-004 chr11 48453788 48510654 56867 * OR4A47 0.454 1 NA 1.05912850215592 19 0.458567340581461 4 4 0 -5.76494726639082 LTS-004 chr11 48510655 51516257 3005603 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.463279927782773 21 0.029423589499713 1.15067720097862 456 0.510563227007126 4 2 2 -7.13565977591443 LTS-004 chr11 51516258 51527703 11446 * character(0) NA 0 NA 1.14875695890539 6 0.212746484498961 4 NA NA -5.76449531858952 LTS-004 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.483 1 NA 0.889774139239386 21 0.385206438160112 3 3 0 -5.76563232654498 LTS-004 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.454989506288697 8 0.0317059593316912 1.20946769944464 81 0.550676931345457 4 2 2 -6.89378018460807 LTS-004 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.626 1 NA NA NA NA NA LTS-004 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.596618642094848 67 0.0749643756792917 1 NA NA -5.76454044573556 LTS-004 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.992 1 NA NA NA NA NA LTS-004 chr11 55432533 56000600 568068 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR8J3, TRIM51) 0.477816278493353 5 0.0118025420990564 1.16654688775325 442 0.294746096647964 4 2 2 -10.2473252076252 LTS-004 chr11 56000601 56143125 142525 * c(OR5T2, OR8H1, OR8K3, OR8J1, OR5T3, OR5T1, OR8K1, OR8U8) 0.294 1 NA 1.20680444763446 155 0.217354034442032 5 5 0 -5.77358749773599 LTS-004 chr11 56143126 56143528 403 * OR8U8 0.222206182125814 10 0.110523250444822 2.40416826493154 18 0.995128073341789 12 10 2 -6.73306943748997 LTS-004 chr11 56143529 56143570 42 * OR8U8 0.306 1 NA 1.92658225773028 3 0.812426612070284 9 9 0 -5.76441017653745 LTS-004 chr11 56143571 56468835 325265 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.330184757589216 30 0.11899259128874 1.29921479806718 292 0.550477819216816 4 3 1 -6.7555570468386 LTS-004 chr11 56468836 56570067 101232 * c(OR9G4, OR8U8) 0.465 1 NA 1.16354583350322 33 0.294901999643847 4 4 0 -5.7653397754866 LTS-004 chr11 56570068 56956461 386394 * c(OR5AK4P, LRRC55, OR5AK2) 0.462 1 NA 1.16297228777836 115 0.206814474468624 4 4 0 -5.7714241487277 LTS-004 chr11 56956462 60638461 3682000 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, PTGDR2, CNTF, CTNND1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, NA NA NA NA NA NA NA NA NA LTS-004 MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, CCDC86, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.438232911283048 85 0.0803905679627091 1.11565889831618 4360 0.270845826206131 4 2 2 -6.73396015227195 LTS-004 NA NA NA NA LTS-004 chr11 60638462 60666116 27655 * c(ZP1, PRPF19) 0.471 1 NA 1.08486171919515 59 0.167777509849269 4 4 0 -5.76507285566732 LTS-004 chr11 60666117 70229171 9563055 * c(NAALADL1, TMEM262, LOC100130987, MIR1908, MIR1237, MIR548K, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, MIR4488, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, RPLP0P2, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, NA NA NA NA NA NA NA NA NA LTS-004 COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, DDB1, GPHA2, EEF1G, MARK2, ESRRA, FAU, MRPL21, TPCN2, VWCE, CYB561A3, PPP1R32, ORAOV1, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FEN1, FGF3, FGF4, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, TKFC, DKFZP434K028, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 B3GAT3, PPP1R14B, MYEOV, BSCL2, NPAS4, PRPF19, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INCENP, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, LRRC10B, GPR152, DOC2GP, FADS1, FADS3, PCNX3, ARL2, LRP5, SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, NDUFV1, NDUFS8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, TMEM216, SLC15A3, CABP2, TRMT112, TMEM138, PGA5, PLCB3, C11orf24, POLR2G, WDR74, SDHAF2, SSH3, TMEM132A, HRASLS2, PPP1CA, VPS37C, ANO1, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, RAB3IL1, MAP4K2, RAD9A, RARRES3, RBM4, CCND1, RELA, DPF2, ROM1, RPS6KB2, PGA3, PGA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, MIR611, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, METTL12, SF1, ZFPL1, LRFN4, AHNAK, TMEM223, TMEM109, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, CPSF7, ASRGL1, TMEM134, MUS81, FOSL1, INTS5, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, PPFIA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LGALS12, CTSF, FADD, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SYT7, SART1, AP5B1, FIBP, SYT12, ACY3, CD5, MTA2, CD6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, FADS2, PITPNM1, RIN1, TESMIN, FGF19, CCS, RCE1) 0.454951253549354 307 0.0566912040319482 1.0814989751721 20084 0.266713733543297 4 2 2 -6.88954100725624 LTS-004 NA NA NA NA LTS-004 chr11 70229172 70757620 528449 * c(MIR3664, SHANK2-AS1, CTTN, SHANK2-AS3, SHANK2, PPFIA1) 0.47 1 NA 1.11219914114697 405 0.257031109399465 4 4 0 -5.76476887741902 LTS-004 chr11 70757621 89450939 18693319 * c(KCNE3, MIR708, LOC100129216, LOC100133315, KCTD21-AS1, SNORA70E, MIR4300, MIR3165, RAB30-AS1, LOC100506368, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, MIR5579, GRM5-AS1, POLD3, CTSC, STARD10, NEU3, ME3, PRSS23, SLCO2B1, SNORD15B, ARAP1, CLNS1A, XRRA1, DHCR7, DLG2, B3GNT6, FOLH1B, GDPD4, DDIAS, CCDC83, LRTOMT, FAM181B, CCDC89, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, RAB38, DEFB108B, RNF169, CHRDL2, ANAPC15, NA NA NA NA NA NA NA NA NA LTS-004 TSKU, C2CD3, TENM4, LRRC32, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, GRM5, ANKRD42, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, TRIM77, FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, NOX4, PAK1, COA4, PDE2A, PPME1, HIKESHI, PCF11, MRPL48, RSF1, SYTL2, LAMTOR1, NADSYN1, FAM86C1, RNF121, ACER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PRCP, TMEM126B, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, CREBZF, RAB6A, CCDC90B, CCDC81, SNORD15A, RPS3, TMEM135, KCTD14, THRSP, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, CLPB, PICALM, FZD4, TMEM126A, DGAT2, RELT, OR7E2P, SERPINH1, EED, ATG16L2, INTS4, SPCS2, ARHGEF17, GAB2, FCHSD2) 0.446975182936775 215 0.0720003945387534 1.09153960090323 12068 0.263793461589943 4 2 2 -6.85994306807664 LTS-004 NA NA NA NA LTS-004 chr11 89450940 89451031 92 * TRIM77 NA 0 NA 1.425 1 NA NA NA NA NA LTS-004 chr11 89451032 89608204 157173 * c(TRIM77, TRIM49, TRIM64B) 0.339932906731907 3 0.235611969135696 0.673136043804708 39 0.593301366483329 1 1 0 -6.73885824239336 LTS-004 chr11 89608205 89707604 99400 * c(TRIM64, TRIM64B) NA 0 NA 16.296 1 NA NA NA NA NA LTS-004 chr11 89707605 110102785 20395181 * c(NAALAD2, WTAPP1, MIR1304, MIR1260B, MIR3920, CASP12, MIR4490, MIR4693, JRKL-AS1, LOC101054525, YAP1, GPR83, CARD16, TMEM123, SLC36A4, FAT3, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, AMOTL1, DEUP1, C11orf65, DDX10, ENDOD1, EXPH5, PANX1, FUT4, ANGPTL5, CHORDC1, GRIA4, C11orf54, GUCY1A2, BIRC2, BIRC3, HEPHL1, ACAT1, VSTM5, IZUMO1R, KDM4E, C11orf87, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, NA NA NA NA NA NA NA NA NA LTS-004 MMP12, MMP13, MRE11A, CARD17, MTNR1B, ATM, NPAT, CWC15, PGR, CNTN5, SLC35F2, RAB39A, ANKRD49, ELMOD1, KDM4D, SMCO4, CEP126, CARD18, RDX, AASDHPPT, SCARNA9, MMP27, TRIM49C, UBTFL1, C11orf97, LOC643733, LOC643923, SNORA8, SLN, SNORA18, SNORA40, SNORD5, TRPC6, TAF1D, DYNC2H1, CCDC82, PDGFD, CUL5, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, CEP295, ZC3H12C, JRKL, MTMR2, ALKBH8, MMP20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MED17, CEP57) 0.448022633872347 157 0.0717907148944737 1.13012277049035 9773 0.354526172113306 4 2 2 -6.74882669138095 LTS-004 NA NA NA NA LTS-004 chr11 110102786 110104023 1238 * RDX NA 0 NA 0.756 1 NA NA NA NA NA LTS-004 chr11 110104024 119510809 9406786 * c(LOC100131626, LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, LAYN, TTC36, DDX6, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, PHLDB1, SIK2, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, NA NA NA NA NA NA NA NA NA LTS-004 H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, COLCA1, C11orf88, MIR34B, MIR34C, MCAM, KMT2A, NCAM1, NNMT, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, USP28, PTS, NECTIN1, RDX, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, CLDN25, C11orf1, RPL23AP64, TAGLN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 THY1, UPK2, ZBTB16, RNF26, NLRX1, ALG9, PDZD3, TMPRSS5, MFRP, BCO2, TMPRSS13, BUD13, TMEM25, DIXDC1, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, FDXACB1, UBE4A, C2CD2L) 0.449103956128144 184 0.071660295207612 1.08224212715602 10261 0.402936798453229 4 2 2 -6.79075306953029 LTS-004 NA NA NA NA LTS-004 chr11 119510810 119531729 20920 * NECTIN1 NA 0 NA 1.408 1 NA NA NA NA NA LTS-004 chr11 119531730 123676413 4144684 * c(MIR4493, TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, HSPA8, LOC341056, BSX, OR6X1, OR6M1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, NECTIN1, SC5D, LOC649133, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.449664578641589 68 0.068747269081366 1.1317575894116 2938 0.329589053594745 4 2 2 -6.75060043082357 LTS-004 chr11 123676414 123778145 101732 * c(TMEM225, OR8D4, OR6M1) NA 0 NA 1.19137490006381 73 0.308263687679156 4 NA NA -5.76673110749487 LTS-004 chr11 123778146 123810222 32077 * character(0) NA 0 NA 0.79 1 NA NA NA NA NA LTS-004 chr11 123810223 123811013 791 * OR4D5 0.245 1 NA 0.915317485103532 15 0.376756735965315 3 3 0 -5.76441418956975 LTS-004 chr11 123811014 124440362 629349 * c(OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A) 0.254242764319426 57 0.0784791808671187 0.873716281778816 611 0.613182485913749 2 2 0 -6.78954583228043 LTS-004 chr11 124440363 124955032 514670 * c(PANX3, SLC37A2, HEPACAM, VSIG2, OR8A1, NRGN, SPA17, SIAE, ROBO4, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM) 0.261 1 NA 0.777456120971491 1117 0.186250119546598 2 2 0 -5.76461954594336 LTS-004 chr11 124955033 126391297 1436265 * c(PATE3, CHEK1, TIRAP, PATE1, HYLS1, TMEM218, SLC37A2, DCPS, DDX25, STT3A, PATE2, PATE4, ST3GAL4-AS1, CDON, FOXRED1, ACRV1, PKNOX2, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4, EI24, FEZ1) 0.290321904851231 35 0.0707557878382047 0.784447222046458 1869 0.265891411661798 2 2 0 -6.76333274868835 LTS-004 chr11 126391298 126391339 42 * KIRREL3 NA 0 NA 0.932 1 NA NA NA NA NA LTS-004 chr11 126391340 126391409 70 * KIRREL3 0.232 1 NA 1.919 1 NA NA NA NA NA LTS-004 chr11 126391410 128328959 1937550 * c(MIR3167, KIRREL3-AS2, ETS1, KIRREL3-AS3, KIRREL3) 0.394 1 NA 1.10809447707716 121 0.261145435399036 4 4 0 -5.76700622064909 LTS-004 chr11 128328960 133993619 5664660 * c(LOC100128239, SENCR, ADAMTS8, TMEM45B, ADAMTS15, ETS1, C11orf45, SPATA19, IGSF9B, FLI1, C11orf44, MIR4697HG, ZBTB44, APLP2, KCNJ1, KCNJ5, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, TP53AIP1, ST14, JAM3, BARX2, ARHGAP32) 0.447127156163196 62 0.0487158848888909 1.09738633124421 2903 0.361413900509851 4 2 2 -6.76444928616878 LTS-004 chr11 133993620 134009726 16107 * JAM3 NA 0 NA 1.636 1 NA NA NA NA NA LTS-004 chr11 134009727 134038194 28468 * c(NCAPD3, JAM3) 0.381396979872092 3 0.0165630109984065 1.42964663544194 149 0.409023588152068 6 4 2 -6.73666606897215 LTS-004 chr11 134038195 134856681 818487 * c(VPS26B, GLB1L3, NCAPD3, ACAD8, B3GAT1, LOC283177, THYN1, GLB1L2) NA 0 NA 1.43774233484004 697 0.300432830720664 6 NA NA -5.7670907731995 LTS-004 chr12 90923 248071 157149 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.283 1 NA 0.832714471715202 43 0.19093869941017 2 2 0 -5.77835456985745 LTS-004 chr12 248072 7276847 7028776 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, RPL13P5, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NTF3, COPS7A, NA NA NA NA NA NA NA NA NA LTS-004 ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CACNA2D4, CD27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NCAPD2) 0.293199049533001 186 0.0571732973889159 0.938187723310964 8594 0.265601751242337 3 3 0 -7.500011731328 LTS-004 NA NA NA NA LTS-004 chr12 7276848 7360229 83382 * c(PEX5, RBP5, CLSTN3) 0.209 1 NA 0.955988199600032 260 0.207491565771599 3 3 0 -5.76449663317648 LTS-004 chr12 7360230 9447474 2087245 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.295420330616389 45 0.0684334447740019 0.921841334819354 2440 0.292349601666624 2 2 0 -7.20501848918812 LTS-004 chr12 9447475 9450393 2919 * LOC642846 NA 0 NA 0.292 1 NA NA NA NA NA LTS-004 chr12 9450394 9581773 131380 * c(DDX12P, LOC642846) 0.288602439668088 16 0.0956949798404633 0.82149479729278 146 0.465913104074081 2 2 0 -6.74642200414493 LTS-004 chr12 9581774 9582062 289 * DDX12P NA 0 NA 1.409 1 NA NA NA NA NA LTS-004 chr12 9582063 9717935 135873 * DDX12P 0.257085098412492 2 0.00282842712474619 1.54494377801512 113 0.468307824231466 14 11 3 -6.87848536975887 LTS-004 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.477 1 NA NA NA NA NA LTS-004 chr12 9747241 11214038 1466798 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.280635057316502 59 0.0638442865737586 0.893203706777019 1880 0.269722584915426 2 2 0 -6.97743778582488 LTS-004 chr12 11214039 11214066 28 * c(PRH1-PRR4, TAS2R46, PRB4) 0.229 1 NA 1.829 1 NA NA NA NA NA LTS-004 chr12 11214067 11285824 71758 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) 0.217453998387894 16 0.0602821145393336 1.35096303202135 58 0.352172682509746 8 7 1 -6.76708967418566 LTS-004 chr12 11285825 11285832 8 * c(PRH1-PRR4, PRB4) NA 0 NA 0.757 1 NA NA NA NA NA LTS-004 chr12 11285833 19354133 8068301 * c(SMIM10L1, LOC100506314, PRH1-PRR4, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, TAS2R30, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, PIK3C2G, PLEKHA5, MANSC1, PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, PRB2, MIR613, MIR614, SKP1P2, SLC15A5, NA NA NA NA NA NA NA NA NA LTS-004 BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3) 0.275924413726426 58 0.0627289008593711 0.951826546787322 3832 0.280483143988375 3 3 0 -7.11231467761288 LTS-004 NA NA NA NA LTS-004 chr12 19354134 19354138 5 * PLEKHA5 NA 0 NA 1.505 1 NA NA NA NA NA LTS-004 chr12 19354139 21220349 1866211 * c(LOC100506393, AEBP2, SLCO1B3, SLCO1B7, PDE3A, SLCO1C1, PLEKHA5) 0.326841481346602 9 0.186534923748283 1.33319398410441 697 0.397665226953668 5 4 1 -6.75254955914934 LTS-004 chr12 21220350 21245380 25031 * c(SLCO1B3, SLCO1B7) 0.485 1 NA 1.20255658169235 13 0.186297907278665 4 4 0 -5.76649737021328 LTS-004 chr12 21245381 21332027 86647 * SLCO1B1 0.465661543087732 6 0.0207886186810636 1.3677749723824 59 0.365925339623867 6 3 3 -7.61665103913351 LTS-004 chr12 21332028 21349820 17793 * SLCO1B1 NA 0 NA 1.008 1 NA NA NA NA NA LTS-004 chr12 21349821 33529460 12179640 * c(MIR920, MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, RASSF8, FGD4, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, GYS2, IAPP, SMCO2, OVCH1, SYT10, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, H3F3C, TSPAN11, GOLT1B, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, CMAS, ARNTL2, NA NA NA NA NA NA NA NA NA LTS-004 PTHLH, KLHL42, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, C12orf71, BHLHE41, FLJ13224, PYROXD1, SPX, SSPN, TMTC1, PPFIBP1, MED21, C2CD5) 0.426131265390371 214 0.0851185208172026 1.23666545190217 7169 0.805209201746851 5 3 2 -6.75866345850771 LTS-004 NA NA NA NA LTS-004 chr12 33529461 34182671 653211 * c(SYT10, ALG10) NA 0 NA 1.2589574265755 119 0.353397624194352 5 NA NA -5.76703925584568 LTS-004 chr12 38710341 39064484 354144 * c(ALG10B, CPNE8) 0.494 1 NA 1.2299940090764 101 0.258137287903047 5 5 0 -5.77309504829596 LTS-004 chr12 39064485 40713991 1649507 * c(SLC2A13, LRRK2, CPNE8, ABCD2, C12orf40, KIF21A) 0.491955951583879 3 0.00585946527708233 1.11591481730244 918 0.319570248063771 4 2 2 -15.3455975926519 LTS-004 chr12 40713992 40714765 774 * LRRK2 NA 0 NA 1.337 1 NA NA NA NA NA LTS-004 chr12 40714766 41465134 750369 * c(LRRK2, CNTN1) 0.452611018088393 48 0.0718159462921987 1.24650829383694 947 0.333294970093186 4 2 2 -6.80078701554888 LTS-004 chr12 41465135 41968282 503148 * c(CNTN1, PDZRN4) 0.475292845710106 4 0.0104721853816033 1.09304410121364 130 0.178013368743478 4 2 2 -10.4717471861956 LTS-004 chr12 41968283 42475888 507606 * c(GXYLT1, PDZRN4) 0.414 1 NA 1.14501604814786 9 0.194375281350279 4 4 0 -5.7677739631759 LTS-004 chr12 42475889 42478554 2666 * GXYLT1 0.241000210468755 9 0.146080267128878 1.25465365973426 61 0.513281654484749 7 6 1 -6.73438164559401 LTS-004 chr12 42478555 42481545 2991 * GXYLT1 0.456 1 NA 1.09817689587918 58 0.318751959770021 4 4 0 -5.76441817087901 LTS-004 chr12 42481546 54385599 11904054 * c(HOTAIR, PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, LOC100652999, HOXC13-AS, YAF2, TUBA1B, RAPGEF3, MCRS1, ATF7, ADCY6, GALNT6, KRT71, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, KRT74, COL2A1, ASB8, KRT72, PRICKLE1, BCDIN3D, KRT80, GRASP, KRT78, ANO6, ARID2, EIF4B, CELA1, FAIM2, DDN, TNS2, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, AMHR2, RND1, GPD1, NA NA NA NA NA NA NA NA NA LTS-004 LOC283332, LOC283335, ZNF740, C12orf80, LINC00592, GXYLT1, TMPRSS12, KRT6C, RACGAP1, SENP1, NR4A1, KRT73, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, AQP6, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, LINC00938, FIGNL2, MIR196A2, ASIC1, DBX2, ATF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NELL2, SLC11A2, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PPHLN1, HDAC7, ATP5G2, PFDN5, PFKM, SLC38A2, PRR13, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, RARG, C12orf10, ATG101, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SP1, SNORA2A, SNORA2B, SNORA2C, TARBP2, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RPAP3, DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, SOAT2, TUBA1C, SPRYD3, MFSD5, COX14, ZCRB1, CCDC65, NPFF, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, ESPL1, DAZAP2) 0.458812388944677 259 0.033418333007412 1.11504854530583 15490 0.656179041094074 4 2 2 -6.94765748218937 LTS-004 NA NA NA NA LTS-004 chr12 54385600 54397154 11555 * c(HOXC9, MIR196A2) NA 0 NA 1.15575373680107 39 0.178635497663933 4 NA NA -5.76460262924154 LTS-004 chr12 54397155 54402885 5731 * character(0) NA 0 NA 0.81 1 NA NA NA NA NA LTS-004 chr12 54402886 54424123 21238 * c(HOXC4, HOXC5, HOXC6, HOXC8) 0.263 1 NA 0.814589465151069 95 0.158680239365403 2 2 0 -5.7657524029051 LTS-004 chr12 54424124 56116981 1692858 * c(LOC100240734, LOC100240735, BLOC1S1-RDH5, MIR3198-2, DCD, MUCL1, OR2AP1, OR10P1, GTSF1, OR10A7, METTL7B, COPZ1, CBX5, SMUG1, OR6C74, OR6C3, ZNF385A, BLOC1S1, OR6C6, NCKAP1L, HNRNPA1, HOXC4, HOXC5, HOXC6, OR6C2, OR6C4, ITGA5, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, FLJ12825, OR9K2, MIR148B, NFE2, PDE1B, GPR84, PPP1R1A, NEUROD4, RDH5, GLYCAM1, MIR615, LACRT, TESPA1) 0.29953702640437 42 0.0467400265436469 0.794406304378358 2234 0.240350285381821 2 2 0 -6.90615573547397 LTS-004 chr12 56116982 56131052 14071 * c(BLOC1S1-RDH5, RDH5, CD63) 0.264 1 NA 0.755097028965231 79 0.154105432280493 2 2 0 -5.76462056252381 LTS-004 chr12 56131053 70214966 14083914 * c(LOC100130075, AGAP2-AS1, MIR1279, MIR1228, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, DCTN2, CCT2, AVIL, PTGES3, FRS2, OS9, CPSF6, BAZ2A, WIF1, IRAK3, NXPH4, XPOT, GPR182, MBD6, ARHGEF25, C12orf56, AGAP2, RAB3IP, SDR9C7, LRIG3, CPM, MYL6B, CS, BEST3, C12orf66, CYP27B1, DGKA, DDIT3, DTX3, RPSAP52, ERBB3, R3HDM2, MON2, NA NA NA NA NA NA NA NA NA LTS-004 NEMP1, TBC1D30, ESYT1, GRIP1, LEMD3, STAC3, MSRB3, B4GALNT1, METTL21B, SNORD59A, GLS2, GLI1, GNS, RASSF3, ANKRD52, SLC39A5, SPRYD4, LINC01465, DPY19L2, ORMDL2, TBK1, APOF, FAM19A2, IFNG, INHBC, LRRC10, KIF5A, FLJ41278, LRP1, MIRLET7I, LYZ, MIR26A2, MARS, MDM2, METTL1, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL22, IL23A, TMBIM4, AVPR1A, SLC35E3, PRIM1, IL26, CAND1, MDM1, NDUFA4L2, NUP107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PPM1H, SRGAP1, RAB5B, RAP1B, RBMS2, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, MIR548C, NABP2, PIP4K2C, YEATS4, HMGA2, INHBE, LLPH, PYM1, SARNP, DYRK2, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, ATP23, SLC16A7, HELB, MARCH9, COQ10A, ZBTB39, PAN2, USP15) 0.309894500299844 214 0.0679646674409499 0.790123203257857 13385 0.19037195947113 2 2 0 -6.98832627625094 LTS-004 NA NA NA NA LTS-004 chr12 70214967 75678906 5463940 * c(LOC100507377, RAB3IP, TPH2, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, CAPS2, LGR5) 0.335444807537996 21 0.0554973615846478 0.828985870254969 2268 0.20006996470853 2 2 0 -7.73843840102952 LTS-004 chr12 75678907 75683372 4466 * CAPS2 NA 0 NA 0.582 1 NA NA NA NA NA LTS-004 chr12 75683373 77157739 1474367 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.299361586198871 3 0.0251197133741609 0.740503416902174 975 0.174492711388168 2 2 0 -7.30522349035687 LTS-004 chr12 77157740 83289922 6132183 * c(MIR1252, MIR4699, E2F7, CSRP2, TMTC2, ZDHHC17, OTOGL, CCDC59, PTPRQ, MYF5, MYF6, PPP1R12A, PAWR, SYT1, MIR617, MIR618, ACSS3, METTL25, PPFIA2, LIN7A, NAV3) 0.304033086598961 30 0.0442220754151474 0.824685421475407 2434 0.216736772807564 2 2 0 -7.28421688139155 LTS-004 chr12 83289923 88591668 5301746 * c(MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, MKRN9P, NTS, SLC6A15, CEP290, ALX1, LRRIQ1, C12orf29, RASSF9) 0.303222861796713 9 0.0338160875587017 0.889172112254633 1258 0.27985638695622 2 2 0 -7.82225935563348 LTS-004 chr12 88591669 88591709 41 * TMTC3 NA 0 NA 0.76 1 NA NA NA NA NA LTS-004 chr12 88591710 120148073 31556364 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4472-2, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, METAP2, SDS, KERA, PRDM4, CIT, PWP1, FICD, NUDT4, SDSL, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, NA NA NA NA NA NA NA NA NA LTS-004 CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, TMTC3, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DCN, EPYC, DTX1, DUSP6, PLBD2, FAM71C, RMST, CCER1, ELK3, ALDH2, RPH3A, FBXO21, UHRF1BP1L, CUX2, KIAA1033, MED13L, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, TBX5-AS1, LINC01619, FBXW8, HSPB8, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, CFAP73, TMEM233, ARL1, C12orf76, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MVK, MYBPC1, MYL2, NFYB, NOS1, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, TAOK3, ANAPC7, NT5DC3, VPS29, SLC25A3, TPCN1, PMCH, SSH1, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPN11, NTN4, TRPV4, RFC5, RFX4, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643339, LOC643711, LOC643770, SUDS3, ACTR6, SNRPF, SNORA53, TBX5, TBX3, MIR620, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, TCTN1, C12orf49, NAA25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, HVCN1, RASAL1, SRRM4, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, GALNT4, CRADD, HRK, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, RBM19, NR1H4) 0.299828836450181 446 0.0690259385920877 0.787232837739811 23237 0.350132834697351 2 2 0 -6.85575585205108 LTS-004 NA NA NA NA LTS-004 chr12 120148074 123186078 3038005 * c(MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, LRRC43, MORN3, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, NA NA NA NA NA NA NA NA NA LTS-004 SRSF9, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.306174650081268 103 0.0677005196841607 0.754964491120411 4975 0.198894134061726 2 2 0 -6.88512772677806 LTS-004 NA NA NA NA LTS-004 chr12 123186079 123186177 99 * HCAR2 NA 0 NA 0.915 1 NA NA NA NA NA LTS-004 chr12 123186178 123186835 658 * HCAR2 0.36 1 NA 0.385289296585866 39 0.447952721864307 0 0 0 -5.76442952327924 LTS-004 chr12 123186836 125512930 2326095 * c(MIR4304, MIR3908, LOC100507091, ZNF664-FAM101A, MIR5188, MPHOSPH9, TMED2, SNRNP35, BRI3BP, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, HCAR2, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DHX37, DDX55, UBC, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, SCARB1, NCOR2) 0.276769421169252 51 0.109599606411201 0.777404284915548 3704 0.185988210407988 2 2 0 -6.73410811137488 LTS-004 chr12 125512931 132593149 7080219 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, ADGRD1, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, EP400, RAN, SFSWAP, AACS, SNORA49, PUS1, ULK1, TMEM132C, PIWIL1) 0.290581058114719 57 0.0676613823140025 0.830220070367918 2603 0.270772485676077 2 2 0 -7.03974404195474 LTS-004 chr12 132593150 133812682 1219533 * c(LOC100130238, ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, GALNT9, POLE, CHFR, FBRSL1, PXMP2, ANHX, ZNF10, ZNF140, NOC4L) 0.289143015583188 64 0.0619355283550487 0.749558552216539 2451 0.204779585984444 2 2 0 -6.78160216305854 LTS-004 chr12 133812683 133812708 26 * character(0) NA 0 NA 0.54 1 NA NA NA NA NA LTS-004 chr13 19271620 19778565 506946 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0 1 NA 0.759105723326313 71 0.8142011361702 2 2 0 -5.7645763928495 LTS-004 chr13 19778566 33016936 13238371 * c(ANKRD26P3, LINC00426, LINC00421, PAN3-AS1, MIR2276, SACS-AS1, LINC00327, TEX26-AS1, MIR4499, LINC00297, MTUS2-AS1, LINC00398, LINC00424, SPATA13-AS1, FRY, USPL1, CDK8, SAP18, N4BP2L2, CDX2, GJB6, HSPH1, WASF3, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, EEF1AKMT1, SKA3, MICU2, SPATA13, LNX2, FGF9, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, SACS, LATS2, SNORD102, GJA3, GJB2, GPR12, NA NA NA NA NA NA NA NA NA LTS-004 SLC46A3, GTF3A, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, ATP8A2, IL17D, UBL3, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, MIPEPP3, SLC7A1, BRCA2, ZMYM2, MRPL57, IFT88, KATNAL1, MEDAG, N4BP2L1, MTMR6, ZMYM5, TPTE2, NUP58) 0.277172416209323 171 0.0648091097657909 0.762489795004009 8026 0.349029230336523 2 2 0 -6.74754332914665 LTS-004 NA NA NA NA LTS-004 chr13 33016937 41185340 8168404 * c(MIR548F5, MIR4305, MINOS1P1, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, N4BP2L2, POSTN, EXOSC8, N4BP2L2-IT2, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.265896803450648 83 0.0729867067306696 0.813097341627382 3389 0.251397936375636 2 2 0 -6.9278537046487 LTS-004 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 0.545 1 NA NA NA NA NA LTS-004 chr13 41239781 52492651 11252871 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, NA NA NA NA NA NA NA NA NA LTS-004 SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MTRF1) 0.278461792903895 95 0.0702428725367723 0.743271490637548 6090 0.368991067934751 2 2 0 -6.81323966945581 LTS-004 NA NA NA NA LTS-004 chr13 52492652 52506783 14132 * character(0) NA 0 NA 0.838 1 NA NA NA NA NA LTS-004 chr13 52506784 84451507 31944724 * c(MIR1297, MIR759, MIR3169, MIR3665, RBM26-AS1, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00381, LINC00446, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, MRPS31P5, SPRY2, PIBF1, OLFM4, SUGT1, LECT1, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, HNRNPA1L2, DACH1, COMMD6, EDNRB, TPTE2P3, DIS3, MYCBP2, FBXL3, CKAP2, PCDH17, OR7E156P, LINC00550, LINC00347, NEK5, LMO7, ALG11, MZT1, NA NA NA NA NA NA NA NA NA LTS-004 NEK3, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, THSD1, KLHL1, ATXN8OS, RBM26, CTAGE11P, PCDH20, KLF5, BTF3P11, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, RNF219, BORA, TDRD3, DIAPH3, SCEL, UTP14C, TBC1D4) 0.271128743410465 75 0.0670968991375449 0.779674954187689 5005 0.529061994781618 2 2 0 -6.73909011211702 LTS-004 NA NA NA NA LTS-004 chr13 84451508 95815415 11363908 * c(MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00559, ABCC4, SOX21, SLITRK1, LINC00410, GPR180, DCT, GPC5, TGDS, SLITRK5, MIR19B1, MIR17HG, MIR4500HG, MIR622, SLITRK6) 0.249103029988407 5 0.0246272207120495 1.04908668164367 809 0.261004280410847 3 3 0 -8.16567876331271 LTS-004 chr13 95815416 95859035 43620 * ABCC4 0.202 1 NA 1.11802788468669 55 0.293964816145254 4 4 0 -5.76441367472349 LTS-004 chr13 95859036 114472162 18613127 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR4306, MIR3170, BIVM-ERCC5, MIR2681, MIR548AN, MIR4705, MIR548AS, LINC00443, CLDN10-AS1, COL4A2-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, ABCC4, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, RNF113B, LINC00343, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, DZIP1, MYO16, ATP11A, MCF2L, DOCK9, NALCN, HS6ST3, DAOA, NA NA NA NA NA NA NA NA NA LTS-004 OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, GPR18, UBAC2, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, ATP4B, PCCA, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, RAP2A, GRK1, CCDC168, SLC10A2, SLC15A1, SOX1, MIR623, TFDP1, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, CARS2, GRTP1, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, PROZ, ARHGEF7, CLDN10, TEX30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ITGBL1, TM9SF2) 0.191458813133644 164 0.0570408769346894 1.03339230198566 8138 0.284934745022417 4 4 0 -7.54220659575353 LTS-004 NA NA NA NA LTS-004 chr13 114472163 114498109 25947 * TMEM255B NA 0 NA 0.44 1 NA NA NA NA NA LTS-004 chr13 114498110 114792842 294733 * c(GAS6-AS2, LINC00565, RASA3, GAS6, TMEM255B, GAS6-AS1) 0.19134409832938 8 0.0388246975887404 0.934904253364339 260 0.218729943490571 4 4 0 -6.85451873155514 LTS-004 chr13 114792843 115092817 299975 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 0.878883899292914 255 0.210279225981597 3 NA NA -5.78750208589149 LTS-004 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.222 1 NA 1.63866045313622 5 1.21977403645101 7 7 0 -5.76441353434556 LTS-004 chr14 20201562 20404649 203088 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.358711941424915 10 0.137462883879411 2.24062953669807 201 0.417713176129791 12 8 4 -6.74245399563967 LTS-004 chr14 20404650 20404736 87 * OR4K1 0.28 1 NA 0.83 1 NA NA NA NA NA LTS-004 chr14 20404737 20404767 31 * OR4K1 0.294 1 NA 1.39838286518575 3 0.520576923550529 6 6 0 -5.76441030043128 LTS-004 chr14 20404768 20470317 65550 * c(OR4K1, OR4K15) 0.49 1 NA 1.17497790503994 27 0.290877369134561 4 4 0 -5.76540488465987 LTS-004 chr14 20470318 22466247 1995930 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-004 TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.451866196150963 106 0.0365682220067745 1.10803633071093 3499 0.355525814777413 4 2 2 -6.81368058380648 LTS-004 NA NA NA NA LTS-004 chr14 22466248 23014062 547815 * character(0) 0.448933491775509 19 0.043578121019371 1.2940143213258 753 0.291104582439728 6 3 3 -6.82970122600435 LTS-004 chr14 23014063 23014148 86 * character(0) 0.489 1 NA 1.12 1 NA NA NA NA NA LTS-004 chr14 23014149 23504190 490042 * c(MIR4707, PRMT5, MRPL52, DAD1, REM2, LRP10, MMP14, OXA1L, HAUS4, RBM23, PSMB5, C14orf93, ABHD4, AJUBA, SLC7A7) 0.410569261105713 13 0.127356857808165 1.034001510164 1115 0.194919987230079 3 2 1 -6.79272115658808 LTS-004 chr14 23504191 37892238 14388048 * c(MIR208B, SLC25A21-AS1, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR4503, MIR548AI, PTCSC3, LINC00609, DHRS2, EFS, IRF9, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, CMA1, PSMB11, LTB4R, MIPOL1, MDP1, CTSG, FITM1, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, HECTD1, HEATR5A, NGDN, NKX2-8, TINF2, CIDEB, IGBP1P1, TSSK4, NA NA NA NA NA NA NA NA NA LTS-004 FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, PAX9, EMC9, PCK2, GMPR2, SLC22A17, MBIP, PPP2R3C, C14orf119, RNF31, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, BCL2L2, NPAS3, CBLN3, CDH24, IL25, SRP54, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NUBPL, DCAF11, PABPN1, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, ZFHX2, AP1G2, SLC25A21, CARMIL3, PPP1R3E, CPNE6, AKAP6, KIAA0391, REC8) 0.441762336537262 148 0.0686376031373619 1.11486675877307 9620 0.28221583879014 4 2 2 -6.73862254434416 LTS-004 NA NA NA NA LTS-004 chr14 37892239 37969143 76905 * MIPOL1 NA 0 NA 1.501 1 NA NA NA NA NA LTS-004 chr14 37969144 38061756 92613 * c(MIPOL1, FOXA1) NA 0 NA 1.61171666729605 190 0.551890583596857 7 NA NA -5.76448233421366 LTS-004 chr14 38061757 68162559 30100803 * c(SNORD127, KTN1-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, FAM71D, TMEM229B, CLEC14A, NA NA NA NA NA NA NA NA NA LTS-004 TMEM30B, MDGA2, EIF2S1, LINC01599, ESR2, NID2, ATG14, FKBP3, ZBTB1, DAAM1, SAMD4A, FAM179B, SYNE2, FNTB, KLHDC2, FUT8, FBXO33, PLEKHG3, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, FOXA1, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MAX, MGAT2, MIA2, MNAT1, LINC00238, TEX21P, MTHFD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SIX6, OTX2, ATL1, RDH11, NIN, DACT1, ATP6V1D, JKAMP, DHRS7, C14orf166, SIX4, PIGH, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, ACTR10, PSMA3, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, PLEKHH1, TXNDC16, TRMT5, FANCM, PYGL, ARID4A, SAV1, RPL36AL, RPS29, RTN1, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SNAPC1, SOS2, SPTB, SSTR1, STYX, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, SGPP1, TMX1, SYT16, FSCB, GEMIN2, CDKL1, NEMF, CHURC1, MAPK1IP1L, AKAP5, KIAA0586, DLGAP5) 0.450426283037341 252 0.0715184173446088 1.09136454092023 15940 0.361394096834538 4 2 2 -6.8528992268344 LTS-004 NA NA NA NA LTS-004 chr14 68162560 68353923 191364 * c(RDH12, ZFYVE26, RAD51B) NA 0 NA 1.09059991511871 386 0.232926848578927 4 NA NA -5.76609944431066 LTS-004 chr14 68353924 68713810 359887 * RAD51B NA 0 NA 0.781 1 NA NA NA NA NA LTS-004 chr14 68713811 68758575 44765 * RAD51B 0.2 1 NA 0.756555777355906 5 0.0602436718668443 2 2 0 -5.76812130952706 LTS-004 chr14 68758576 73989983 5231408 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, ACTN1-AS1, ERH, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, PLEKHD1, MAP3K9, COX16, ZFYVE1, EXD2, SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, RBM25, RAD51B, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, RGS6, SUSD6) 0.286612635179646 43 0.0679228602914079 0.75459634311139 3894 0.189187059188314 2 2 0 -6.80478849388461 LTS-004 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.082 1 NA NA NA NA NA LTS-004 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.152060658235024 43 0.174739160139846 0 NA NA -6.10526643954402 LTS-004 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.746 1 NA NA NA NA NA LTS-004 chr14 74035793 78367045 4331253 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, ACOT2, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, GPATCH2L, YLPM1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, NA NA NA NA NA NA NA NA NA LTS-004 TGFB3, LINC01220, ZC2HC1C, BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, ALKBH1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.259074541031291 81 0.0612853249104769 0.749976419323606 6336 0.201556849060436 2 2 0 -6.83468449495871 LTS-004 NA NA NA NA LTS-004 chr14 78367046 78374154 7109 * ADCK1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-004 chr14 78374155 88654361 10280207 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GALC, LOC283585, LINC01146, GTF2A1, KCNK10, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.267957967480429 24 0.0419367838607077 0.817152588690555 1742 0.236588659887401 2 2 0 -7.06219919152579 LTS-004 chr14 88654362 94732242 6077881 * c(SNORA11B, FBLN5, PTPN21, FOXN3, CHGA, IFI27L1, TTC8, TC2N, SLC24A4, PRIMA1, TTC7B, EML5, LINC00521, TMEM251, FAM181A-AS1, FOXN3-AS2, ITPK1-AS1, COX8C, IFI27, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, ASB2, CPSF2, KCNK10, NRDE2, UBR7, PPP4R3A, BTBD7, TDP1, SPATA7, LGMN, KCNK13, PSMC1, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, IFI27L2, GON7, FAM181A, NA NA NA NA NA NA NA NA NA LTS-004 EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.273172872102209 113 0.0588357989035327 0.74651845125067 5610 0.179587913467119 2 2 0 -6.87480169202436 LTS-004 NA NA NA NA LTS-004 chr14 94732243 94733222 980 * PPP4R4 NA 0 NA 0.787 1 NA NA NA NA NA LTS-004 chr14 94733223 106321663 11588441 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, SYNE3, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, NA NA NA NA NA NA NA NA NA LTS-004 EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, SERPINA11, KIF26A, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, SERPINA9, HSP90AA1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, SERPINA1, SERPINA4, CDCA4, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, SETD3, APOPT1, HHIPL1, SERPINA6, DLK1, CCNK, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2) 0.263621460005545 240 0.0614232179069724 0.784854603391939 11552 0.353334510252342 2 2 0 -6.76497309537216 LTS-004 NA NA NA NA LTS-004 chr14 106321664 106321690 27 * character(0) NA 0 NA 0.705 1 NA NA NA NA NA LTS-004 chr14 106321691 107259621 937931 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.302954012355178 47 0.0873065510574053 0.715135139625074 549 0.276849695548899 2 2 0 -6.83903205789798 LTS-004 chr14 107259622 107283157 23536 * character(0) NA 0 NA 0.70156876329812 14 0.312661571418296 2 NA NA -5.76579309364844 LTS-004 chr15 20169987 20433934 263948 * character(0) 0.016 1 NA 1.39664345786118 13 1.17108818013035 6 6 0 -5.7647128748459 LTS-004 chr15 20433935 26792316 6358382 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-004 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, MIR4508, MIR4715, POTEB, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRB3, LOC283683, OR4N4, HERC2P3, GOLGA6L1, GOLGA8IP, SNORD109B, SNORD115-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 WHAMMP3, PWAR4, PWARSN, LINC01193, IPW, GOLGA8EP, OR4M2, OR4N3P, HERC2P2, NF1P2, GOLGA6L22, NDN, LINC00929, MAGEL2, ATP10A, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA8S, SNRPN, SNORD116-19, GOLGA6L6, LOC727924, GOLGA8CP, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, SNURF) 0.384057404734566 66 0.0857954864848117 1.10864281965522 2081 0.449226923410405 4 3 1 -6.86052443601181 LTS-004 NA NA NA NA LTS-004 chr15 26792317 28519571 1727255 * c(GABRA5, GABRB3, GABRG3, OCA2, HERC2) 0.441487914960618 13 0.0442772442567778 0.970344580787442 744 0.222839798953965 4 2 2 -7.14576906653142 LTS-004 chr15 28519572 28520001 430 * HERC2 NA 0 NA 0.731 1 NA NA NA NA NA LTS-004 chr15 28520002 29008732 488731 * c(HERC2P9, WHAMMP2, HERC2) 0.477 1 NA 0.555810268164119 45 0.357124055349245 1 1 0 -5.77761170476402 LTS-004 chr15 29008733 30337510 1328778 * c(LOC100289656, FAM189A1, APBA2, WHAMMP2, NSMCE3, PDCD6IPP2, TJP1, GOLGA6L7P) 0.409264439574548 10 0.142600451923859 0.969628961515372 612 0.275691716641921 3 2 1 -6.73928551146957 LTS-004 chr15 30337511 30918435 580925 * c(DKFZP434L187, GOLGA8T, CHRFAM7A, ARHGAP11B) 0.231 1 NA 0.662763520095747 68 0.287874893566489 1 1 0 -5.80628827495187 LTS-004 chr15 30918436 30918458 23 * ARHGAP11B NA 0 NA 1.516 1 NA NA NA NA NA LTS-004 chr15 30918459 31668706 750248 * c(LOC100288637, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.468352480831415 20 0.0191098624303071 1.04106743162584 604 0.219537645218199 4 2 2 -7.97767048108552 LTS-004 chr15 31668707 31669122 416 * KLF13 0.34 1 NA 0.906545804778497 11 0.217770897128987 3 3 0 -5.76442052081112 LTS-004 chr15 31669123 32450812 781690 * c(CHRNA7, OTUD7A, KLF13) NA 0 NA 1.01888583331287 173 0.953698578637408 3 NA NA -5.76710794283477 LTS-004 chr15 32450813 32451764 952 * CHRNA7 NA 0 NA 0.036 1 NA NA NA NA NA LTS-004 chr15 32451765 32464575 12811 * CHRNA7 NA 0 NA 0.442911326906232 49 0.397088059340429 0 NA NA -5.76448824063646 LTS-004 chr15 32464576 32620053 155478 * character(0) NA 0 NA 0.673 1 NA NA NA NA NA LTS-004 chr15 32620054 34140596 1520543 * c(WHAMMP1, TMCO5B, LOC100996255, GREM1, FMN1, RYR3, SCG5, GOLGA8O, ARHGAP11A) 0.266307912259704 40 0.0451811169996198 0.806500204608736 1266 0.276867378859266 2 2 0 -6.77564058539954 LTS-004 chr15 34140597 34145127 4531 * RYR3 NA 0 NA 0.658 1 NA NA NA NA NA LTS-004 chr15 34145128 43888811 9743684 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CKMT1B, TGM7, PLA2G4E, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, CSNK1A1P1, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, CCNDBP1, LPCAT4, PLA2G4F, LRRC57, NUTM1, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, TUBGCP4, FAM98B, NA NA NA NA NA NA NA NA NA LTS-004 PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MAP1A, MEIS2, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, RAD51, RYR3, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TP53BP1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TMEM62, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, LCMT2, SLC12A6) 0.270174343420124 166 0.0667789386862564 0.740809983327609 11303 0.173193127357773 2 2 0 -7.08298849509925 LTS-004 NA NA NA NA LTS-004 chr15 43888812 43889627 816 * CKMT1B NA 0 NA 0.255 1 NA NA NA NA NA LTS-004 chr15 43889628 43901589 11962 * c(CKMT1B, STRC) NA 0 NA 0.202118479627179 79 0.0678140775018923 0 NA NA -6.52442099871307 LTS-004 chr15 43901590 43902471 882 * STRC NA 0 NA 0.729 1 NA NA NA NA NA LTS-004 chr15 43902472 43989530 87059 * c(CATSPER2, STRC, CKMT1A) 0.214752895566682 7 0.110489387553307 0.729218751163202 174 0.391715673322284 3 3 0 -6.76101043676425 LTS-004 chr15 43989531 43989545 15 * CKMT1A NA 0 NA 1.188 1 NA NA NA NA NA LTS-004 chr15 43989546 44017441 27896 * CKMT1A 0.20773944441769 4 0.0583516637866194 1.25856455278956 106 0.43501302765757 8 7 1 -6.74946522287652 LTS-004 chr15 44017442 45060093 1042652 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.289603626209555 41 0.0503992111823675 0.733871531838821 1526 0.190252219350394 2 2 0 -6.83082362563488 LTS-004 chr15 45060094 45117968 57875 * character(0) NA 0 NA 1.955 1 NA NA NA NA NA LTS-004 chr15 45117969 45139663 21695 * character(0) NA 0 NA 1.80363122940803 39 2.30183058290324 8 NA NA -5.76441029325684 LTS-004 chr15 45139664 45139668 5 * character(0) NA 0 NA 0.819 1 NA NA NA NA NA LTS-004 chr15 45139669 48787470 3647802 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.265633494587556 47 0.0580134358739908 0.78790290768757 2499 0.205612132883337 2 2 0 -6.76574589082559 LTS-004 chr15 48787471 51233802 2446332 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.284100439580948 42 0.0443296698424333 0.723637347947494 2266 0.177937870667826 2 2 0 -6.95872075010667 LTS-004 chr15 51233803 58007982 6774180 * c(LOC100129973, DCAF13P3, BCL2L10, MIR1266, DYX1C1-CCPG1, MIR4713, MYZAP, GNB5, ARPP19, LEO1, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DMXL2, AP4E1, LYSMD2, WDR72, PYGO1, PRTG, LINC00926, SCG3, TMOD3, TMOD2, ONECUT1, GLDN, TEX9, TNFAIP8L3, UNC13C, MYO5A, NEDD4, RSL24D1, ZNF280D, MNS1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, MIR628, TCF12, POLR2M, CGNL1, CCPG1, PIGB) 0.275742374425592 98 0.0651440593964453 0.769056360990341 4877 0.242171242679321 2 2 0 -6.73561084393673 LTS-004 chr15 58007983 58007995 13 * c(GCOM1, POLR2M) NA 0 NA 0.934 1 NA NA NA NA NA LTS-004 chr15 58007996 58009516 1521 * c(GCOM1, POLR2M) 0.46045209723705 3 0.0376430604494374 1.14542226514163 45 0.336395795623446 4 2 2 -6.93057200076855 LTS-004 chr15 58009517 66793677 8784161 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, MIR4511, PDCD7, ADAM10, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, MGC15885, ZNF609, DAPK2, FOXB1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, LIPC, MIR190A, MYO1E, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, VPS13C, DPP8, PARP16, TIPIN, MAP2K1, IGDCC4, SNORD18C, RORA, RPL4, NA NA NA NA NA NA NA NA NA LTS-004 BNIP2, SNX1, HSP90AB4P, SCARNA14, TPM1, CA12, ICE2, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.28147021542396 133 0.0607453073684037 0.745403924912462 8129 0.197340021493628 2 2 0 -6.92197010902555 LTS-004 NA NA NA NA LTS-004 chr15 66793678 66874670 80993 * c(LCTL, ZWILCH, SNORD16, SNORD18A, SNORD18B, RPL4) 0.214 1 NA 0.742881273890506 189 0.178670885800819 2 2 0 -5.76692333143734 LTS-004 chr15 66874671 67074328 199658 * SMAD6 NA 0 NA 0.72625081247164 97 0.253011696566891 2 NA NA -5.77189470025366 LTS-004 chr15 67074329 67212104 137776 * SMAD6 NA 0 NA 0.943 1 NA NA NA NA NA LTS-004 chr15 67212105 72608326 5396222 * c(NR2E3, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, DRAIC, C15orf61, CT62, GRAMD2, ITGA11, SPESP1, GLCE, EWSAT1, SKOR1, SMAD3, LINC00593, MYO9A, PKM, LRRC49, PAQR5, CLN6, UACA, LARP6, MAP2K5, THAP10, PARP6, CELF6, RPLP1, IQCH, MIR629, TLE3, NOX5, AAGAB, THSD4, ANP32A-IT1, ANP32A, PIAS1, CALML4, KIF23) 0.186912736598737 90 0.0509621239490982 1.09666985678932 4021 0.271984133760381 4 4 0 -6.7572798327598 LTS-004 chr15 72608327 72612212 3886 * CELF6 NA 0 NA 0.997624004417784 8 0.263198153217576 3 NA NA -5.76449854532671 LTS-004 chr15 72612213 72635829 23617 * c(HEXA, CELF6) 0.29 1 NA 0.851149112613639 9 0.24464515118841 2 2 0 -5.76656450165153 LTS-004 chr15 72635830 92397259 19761430 * c(DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR4313, NA, UBE2Q2L, LINC00933, PRC1-AS1, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, AP3S2, HMG20A, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, HIGD2B, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, CSK, HAPLN3, MESP2, NA NA NA NA NA NA NA NA NA LTS-004 NRG4, LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ACAN, SCAMP5, ETFA, FAH, FES, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, GABARAPL3, LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, FBXO22, VPS33B, MRPL46, NPTN, SLCO3A1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TMC3, ZNF774, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, ZNF710, HDDC3, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, GDPGP1, ADAMTS7P1, ST20, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2A2, MAN2C1, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, NEO1, NMB, NTRK3, SCAPER, FURIN, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, DET1, FANCI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 IMP3, DNAJA4, GOLGA6B, MESP1, UNC45A, PSMA4, C15orf39, WDR93, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, CELF6, BLM, STRA6, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, ISL2, EFTUD1P1, MRPS11, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR630, MIR631, AGBL1-AS1, LOC729739, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PEX11A, IQGAP1, TICRR, PSTPIP1, PRC1, RCCD1, LOC91450, SLC28A1, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, SV2B, ARNT2) 0.266315983950809 323 0.0584917170594242 0.756714958476067 17066 0.230845534342606 2 2 0 -6.8538518041356 LTS-004 NA NA NA NA LTS-004 chr15 92397260 92706785 309526 * SLCO3A1 0.291920003052193 4 0.256598259282222 1.18215915139597 91 0.26718611586836 5 4 1 -6.75530928870601 LTS-004 chr15 92706786 92708528 1743 * SLCO3A1 0.466 1 NA 1.17211752810535 42 0.253199192357426 4 4 0 -5.76444144953339 LTS-004 chr15 92708529 101113862 8405334 * c(LINC00930, MIR1469, MIR3175, LINC01578, MIR4714, SPATA8-AS1, CHD2, LRRC28, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, SYNM, SLCO3A1, FAM169B, IGF1R, SPATA41, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, LINS1, MCTP2, RGMA, NR2F2-AS1, TTC23, NR2F2, HSP90B2P, ASB9P1, ST8SIA2, ARRDC4, LINC00923) 0.449941831156949 80 0.056585635785199 1.11736963803774 2894 0.287514745494174 4 2 2 -6.75847339938103 LTS-004 chr15 101113863 101418204 304342 * c(ASB7, LINS1) NA 0 NA 1.08067990989636 140 0.195873042339454 4 NA NA -5.77105834002975 LTS-004 chr15 101418205 101434348 16144 * ALDH1A3 0.232 1 NA 0.804643134430659 69 0.181305206778832 2 2 0 -5.76486338667635 LTS-004 chr15 101434349 102194288 759940 * c(LOC100507472, TARSL2, ALDH1A3, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.228025992707074 23 0.0866793874316933 0.708828706099153 793 0.193978893496015 2 2 0 -6.99580461273021 LTS-004 chr15 102194289 102516544 322256 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) NA 0 NA 0.762008735822947 237 0.202130545666011 2 NA NA -5.76550604750989 LTS-004 chr16 81704 109103 27400 * c(POLR3K, RHBDF1, SNRNP25) 0.341 1 NA 0.71930996243816 97 0.219810098940472 2 2 0 -5.76621702272705 LTS-004 chr16 109104 6533549 6424446 * c(MIR940, LOC100128770, SRRM2-AS1, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MTRNR2L4, MIR3677, MIR3180-5, ERVK13-1, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4717, MIR4516, MIR5587, NUBP2, ZNF263, TRAP1, MSLN, STUB1, MRPL28, TBL3, RNPS1, PRSS21, RPUSD1, FLYWCH2, VASN, ADCY9, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, RNF151, PRR35, FBXL16, SSTR5-AS1, ZNF597, NA NA NA NA NA NA NA NA NA LTS-004 BICDL2, C16orf89, C16orf71, ECI1, DNASE1, DNASE1L2, E4F1, EEF2KMT, WDR90, EME2, NLRC3, ABCA3, CLUAP1, MAPK8IP3, MGRN1, TPSD1, SRRM2, MEIOB, TPSG1, RAB26, PRSS33, ZNF500, DECR2, OR1F2P, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, LINC00514, LINC00921, NHLRC4, C16orf91, UBN1, CDIP1, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, HMOX2, JMJD8, C16orf96, IGFALS, PRSS41, PRR25, C1QTNF8, PTX4, ARHGDIG, MEFV, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MPG, SMIM22, NDUFB10, NME3, NME4, NTHL1, NTN3, OR1F1, OR2C1, AMDHD2, PAM16, NAGPA, TNFRSF12A, PDPK1, MSRB1, GNG13, ATP6V0C, PKD1, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, LUC7L, ALG1, SNORA10, NMRAL1, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, SRL, CHTF18, PRSS22, MLST8, RHBDF1, MMP25, NARFL, LINC00235, TPSB2, FLJ42627, CCDC154, C16orf90, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LOC652276, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TCEB2, TFAP4, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, CEMP1, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, METRN, THOC6, KREMEN2, CORO7, ROGDI, TMEM204, NAA60, C16orf59, NPRL3, ZNF205-AS1, FAHD1, AXIN1, PRSS27, FAM234A, WDR24, TRAF7, FLYWCH1, HAGHL, NUDT16L1, METTL26, MCRIP2, SLX4, GNPTG, GLYR1, GLIS2, ZSCAN10, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CLDN6, CLDN9, ZNF598, HN1L, SPSB3, PKMYT1, PIGQ, DNAJA3, TIGD7, SYNGR3, IL32, SLC9A3R2, SEC14L5, RAB11FIP3, IFT140, TELO2) 0.267456494357477 302 0.0635225513493699 0.748059031262567 13141 0.226728670667401 2 2 0 -6.82544207084936 LTS-004 NA NA NA NA LTS-004 chr16 6533550 6704745 171196 * RBFOX1 NA 0 NA 0.65788619116133 7 0.0794226188245664 1 NA NA -5.9013119052487 LTS-004 chr16 6704746 7102012 397267 * RBFOX1 NA 0 NA 1.264 1 NA NA NA NA NA LTS-004 chr16 7102013 7657373 555361 * RBFOX1 0.452 1 NA 1.22436629066935 51 0.2546935798324 5 5 0 -5.78094361129897 LTS-004 chr16 7657374 14968958 7311585 * c(MIR365A, MIR548X, MIR4718, RMI2, TEKT5, ABAT, EMP2, ERCC4, CLEC16A, NOMO1, CARHSP1, TMEM186, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, PARN, TXNDC11, BFAR, PMM2, RBFOX1, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, METTL22, ATF7IP2, SNN, PLA2G10, SOCS1, SNX29, LITAF) 0.442925734033252 104 0.0440320922664958 1.09230337175227 3412 0.270663764308403 4 2 2 -6.78148381622293 LTS-004 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 0.596 1 NA NA NA NA NA LTS-004 chr16 15068593 15123936 55344 * PDXDC1 0 1 NA 0.769309124314584 108 0.19748978420854 2 2 0 -5.76443764164646 LTS-004 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.97 1 NA NA NA NA NA LTS-004 chr16 15125636 28608421 13482786 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-004 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.442817436050446 125 0.0777734990937808 1.08657059329392 9621 0.279045210447956 4 2 2 -6.83916221476911 LTS-004 NA NA NA NA LTS-004 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.28 1 NA NA NA NA NA LTS-004 chr16 28616944 28712734 95791 * SULT1A1 0.344907280096012 3 0.255596035441345 0.590634472928226 78 0.311600407604538 1 1 0 -6.73398382672423 LTS-004 chr16 28712735 28734495 21761 * character(0) NA 0 NA 1.061 1 NA NA NA NA NA LTS-004 chr16 28734496 29367277 632782 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.456212817700782 13 0.0412936637593065 1.09532414519895 855 0.216604216582843 4 2 2 -6.846166787171 LTS-004 chr16 29367278 29624350 257073 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.457111964028341 39 0.394596119045781 0 NA NA -5.76948259437598 LTS-004 chr16 29624351 29624403 53 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.1 1 NA NA NA NA NA LTS-004 chr16 29624404 31804149 2179746 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, CDIPT-AS1, NA NA NA NA NA NA NA NA NA LTS-004 YBX3P1, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.452908940739988 43 0.103198118227798 1.06130401880883 5657 0.231918179363435 4 2 2 -6.81866027668818 LTS-004 NA NA NA NA LTS-004 chr16 31804150 32486857 682708 * c(ZNF267, LOC390705, NA, TP53TG3D) 0 1 NA 0.993134895908027 91 0.361361607641724 3 3 0 -5.77125783943528 LTS-004 chr16 32486858 34682251 2195394 * c(LINC01566, SLC6A10P, LOC390705, UBE2MP1, LINC00273) 0.328588210996702 77 0.0981216986070137 1.08215674510775 411 0.461184085019588 4 3 1 -6.75681775796574 LTS-004 chr16 34682252 34682380 129 * character(0) NA 0 NA 1.19807282660395 5 0.118136785126395 4 NA NA -5.76443390874856 LTS-004 chr16 46508169 46642286 134118 * c(ANKRD26P1, SHCBP1) 0.411 1 NA 1.12824688809025 167 0.280319104420317 4 4 0 -5.76444317078243 LTS-004 chr16 46642287 53155359 6513073 * c(LINC00919, LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, CASC16, SIAH1, SHCBP1, CHD9, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.461435338011292 26 0.0420475189060406 1.09788174515041 2984 0.24035641615448 4 2 2 -6.93794976448722 LTS-004 chr16 53155360 53190046 34687 * CHD9 NA 0 NA 0.816 1 NA NA NA NA NA LTS-004 chr16 53190047 53498223 308177 * c(RBL2, LOC643802, CHD9) 0.374946482514851 4 0.0180808370012748 0.768380622096349 336 0.158641932056471 1 1 0 -7.84595494960686 LTS-004 chr16 53498224 53503934 5711 * RBL2 0.259 1 NA 0.677729374580024 13 0.141047591531806 1 1 0 -5.7669916899609 LTS-004 chr16 53503935 70154614 16650680 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, IRX5, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, NA NA NA NA NA NA NA NA NA LTS-004 GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, POLR2C, PRMT7, DUS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CHTF8, LPCAT2, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.267612074822879 255 0.0619927473632568 0.757884755023596 12913 0.310221525812655 2 2 0 -6.78547831477588 LTS-004 NA NA NA NA LTS-004 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.458 1 NA NA NA NA NA LTS-004 chr16 70161183 70219827 58645 * c(CLEC18C, PDPR) 0.194219103719133 5 0.0645391354141036 0.495424646055785 120 0.229786528629282 3 3 0 -7.13047358566521 LTS-004 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 0.715 1 NA NA NA NA NA LTS-004 chr16 70237374 70796515 559142 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.289943270294237 15 0.0561971868470639 0.749952181446215 1115 0.173377480051237 2 2 0 -6.7859441812959 LTS-004 chr16 70796516 70868083 71568 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.769444364451679 121 0.185595797366212 2 NA NA -5.76444795804643 LTS-004 chr16 70868084 70869685 1602 * HYDIN NA 0 NA 0.949 1 NA NA NA NA NA LTS-004 chr16 70869686 70884524 14839 * HYDIN 0.44 1 NA 1.00341145390834 21 0.161732539353447 3 3 0 -5.76551741699307 LTS-004 chr16 70884525 71127850 243326 * HYDIN 0.396443872914172 74 0.0538718225899177 1.00918042026664 473 0.255617170212381 3 2 1 -6.75368044192697 LTS-004 chr16 71127851 71149660 21810 * HYDIN 0.199 1 NA 1.03246783638189 5 0.726817239751507 4 4 0 -5.76458091156617 LTS-004 chr16 71149661 71237708 88048 * HYDIN 0.293282212427975 12 0.123146223751451 0.985643607426844 103 0.482781828497386 5 4 1 -6.75102957201351 LTS-004 chr16 71237709 71264418 26710 * HYDIN NA 0 NA 0.788 1 NA NA NA NA NA LTS-004 chr16 71264419 78420704 7156286 * c(SYCE1L, SNORA70D, LINC01568, MIR4719, CLEC3A, CHST4, CFDP1, GABARAPL2, TMEM170A, CTRB1, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ADAT1, CHST5, GLG1, HCCAT5, LOC283922, NUDT7, HP, HPR, ATXN1L, PKD1L3, KARS, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, TERF2IP, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, PSMD7, VAT1L, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, PMFBP1, ZNRF1, CNTNAP4, NA NA NA NA NA NA NA NA NA LTS-004 MARVELD3, BCAR1, DHX38, IST1) 0.278751276929073 114 0.0606869769851313 0.767491430272198 4374 0.201136961368979 2 2 0 -6.74218313243871 LTS-004 NA NA NA NA LTS-004 chr16 78420705 78420775 71 * WWOX 0.196 1 NA 1.191 1 NA NA NA NA NA LTS-004 chr16 78420776 78458750 37975 * WWOX 0.33 1 NA 0.947643577684588 5 0.221656942142582 3 3 0 -5.76441014365488 LTS-004 chr16 78458751 79630033 1171283 * c(MAF, WWOX) 0.415 1 NA 0.976014006903201 77 0.170374807961652 3 3 0 -5.78520626534922 LTS-004 chr16 79630034 90161231 10531198 * c(VPS9D1-AS1, LOC100129617, URAHP, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR5093, MIR5189, CDH13, CDH15, MPHOSPH6, EMC8, TUBB3, PRDM7, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, NA NA NA NA NA NA NA NA NA LTS-004 MLYCD, GALNS, GAS8, GCSH, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, PLCG2, BCO1, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, CENPN, CMC2, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.407535834134348 292 0.0615928891189579 0.937515936281776 8550 0.376703982659901 3 2 1 -6.74024887986768 LTS-004 NA NA NA NA LTS-004 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.11 1 NA NA NA NA NA LTS-004 chr17 6004 31142 25139 * DOC2B 0.308 1 NA 0.746453741199127 27 0.177878699986344 2 2 0 -5.76502249326048 LTS-004 chr17 31143 7646596 7615454 * c(C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, RTN4RL1, KCTD11, CTNS, TRPV3, SLC16A11, FBXO39, DLG4, DPH1, DVL2, NA NA NA NA NA NA NA NA NA LTS-004 EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, RAP1GAP2, CAMTA2, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, ELP5, SHPK, AIPL1, ALOX12, ALOX12P2, ALOX15, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, SLC13A5, TMEM102, TUSC5, GPS2, ABR, TIMM22, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, OR3A4P, C17orf97, MED11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PFN1, PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, RPA1, SRR, NXN, SLC35G6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, NEURL4, DOC2B, ZNF594, SPATA22, TXNDC17, MIR22HG, SCARF1, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, RPH3AL, FXR2, MPDU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.273220314007661 318 0.0669327713693491 0.740509528191067 12651 0.225917602141716 2 2 0 -6.90075512776293 LTS-004 NA NA NA NA LTS-004 chr17 7646597 7689885 43289 * c(RPL29P2, DNAH2) 0 1 NA 0.71308410032948 135 0.218025565112362 2 2 0 -5.7680441148741 LTS-004 chr17 7689886 8007586 317701 * c(MIR4314, CHD3, CNTROB, CYB5D1, DNAH2, KDM6B, ALOX12B, ALOX15B, LOC284023, GUCY2D, TRAPPC1, ALOXE3, SCARNA21, NAA38, KCNAB3, TMEM88) 0.243610134393448 5 0.0337742505468293 0.76016538670323 1220 0.162913975768562 2 2 0 -7.21351179965526 LTS-004 chr17 8007587 8011703 4117 * ALOXE3 NA 0 NA 1.83 1 NA NA NA NA NA LTS-004 chr17 8011704 8025297 13594 * c(ALOXE3, HES7) 0.163001441008961 2 0.00494974746830584 1.10356993846766 83 0.238821504147708 5 5 0 -6.77188794631846 LTS-004 chr17 8025298 8025662 365 * HES7 NA 0 NA 0.705 1 NA NA NA NA NA LTS-004 chr17 8025663 15458734 7433072 * c(MIR744, LOC100128288, LINC00675, NA, MAGOH2P, TVP23C-CDRT4, MIR4731, MIR4521, COX10-AS1, TMEM220-AS1, USP43, KRBA2, COX10, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, TVP23C, ARHGEF15, PIK3R5, LINC00324, LINC00670, CDRT4, RANGRF, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PER1, PFAS, PMP22, BORCS6, ADPRM, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, RNF222, PIRT, NA NA NA NA NA NA NA NA NA LTS-004 TEKT3, VAMP2, ZNF18, CTC1, NDEL1, TMEM107, HES7, MGC12916, GAS7, MYH13, AURKB, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.251842489460821 126 0.077945229854962 0.773159066522881 5337 0.197194868792423 2 2 0 -6.78561133420079 LTS-004 NA NA NA NA LTS-004 chr17 15458735 15466747 8013 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.61 1 NA NA NA NA NA LTS-004 chr17 15466748 15469668 2921 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.330642861511903 39 0.214747826251844 0 NA NA -5.76682748691436 LTS-004 chr17 15469669 15474815 5147 * TRIM16 NA 0 NA 0.811 1 NA NA NA NA NA LTS-004 chr17 15474816 21117589 5642774 * c(FAM106CP, LOC100287072, MIR1288, MIR1180, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, TRIM16, RAI1, GRAP, AKAP10, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, SLC47A2, TRIM16L, USP32P1, DRG2, CENPV, FLCN, PLD6, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, MPRIP, USP22, TNFRSF13B, TBC1D28, CDRT15L2, DHRS7B, SNORD49A, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, CDRT1, NA NA NA NA NA NA NA NA NA LTS-004 LRRC75A, LLGL1, KRT16P2, GRAPL, MEIS3P1, MFAP4, TVP23B, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, SLC47A1, MAPK7, PRPSAP2, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, FAM83G, KRT16P3, EVPLL, SHMT1, LGALS9C, SREBF1, SNORA59A, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, ZNF286B, UBB, RNF112, GID4, FAM106A, DRC3, COPS3, TMEM11, ATPAF2, SPECC1, PIGL, NCOR1, ULK2, CCDC144A) 0.256240604312467 98 0.0764804291882 0.766747745971923 6750 0.446488344525372 2 2 0 -6.77031734919121 LTS-004 NA NA NA NA LTS-004 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.372 1 NA 0.670833049020888 31 0.126402233885255 1 1 0 -5.80069895114751 LTS-004 chr17 21194770 21194879 110 * MAP2K3 0.368026671479648 5 0.0131605471010897 0.58670353900078 9 0.156906022828953 9 6 3 -6.7370009857624 LTS-004 chr17 21194880 22066835 871956 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.34939798015798 94 0.0754580734044582 0.857439620963941 441 0.269775438884405 3 2 1 -7.10334106815333 LTS-004 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-004 chr17 25620838 25951644 330807 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.296 1 NA 0.77457134878556 239 0.18668332753548 2 2 0 -5.76441744334526 LTS-004 chr17 25951645 33256092 7304448 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, RHBDL3, LYRM9, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, TMEM98, POLDIP2, TBC1D29, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NA NA NA NA NA NA NA NA NA LTS-004 NEK8, GIT1, EFCAB5, TMIGD1, LGALS9, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, RHOT1, COPRS, FAM222B, ADAP2, UTP6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, MIR632, TNFAIP1, VTN, ZNF207, TEFM, ATAD5, RAB34, NSRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.263267385562968 63 0.0693110858788408 0.756766813440125 7790 0.191902507943286 2 2 0 -6.80787240577332 LTS-004 NA NA NA NA LTS-004 chr17 33256093 33257905 1813 * CCT6B NA 0 NA 0.622 1 NA NA NA NA NA LTS-004 chr17 33257906 34432660 1174755 * c(SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.292655815449782 42 0.0638454916657354 0.716242996222759 2135 0.260748411798613 2 2 0 -6.83962686865465 LTS-004 chr17 34432661 34432665 5 * CCL4 NA 0 NA 0.702 1 NA NA NA NA NA LTS-004 chr17 34432666 34625714 193049 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.462593408269849 39 0.208983275519104 0 NA NA -5.78284840102105 LTS-004 chr17 34625715 34640930 15216 * c(CCL4L1, CCL3L3, CCL3L1, NA) NA 0 NA 2.186 1 NA NA NA NA NA LTS-004 chr17 34640931 36214044 1573114 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.263049007105474 26 0.0972175989132705 0.752716383967064 1566 0.666118489065414 2 2 0 -6.74369942335337 LTS-004 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.272 1 NA NA NA NA NA LTS-004 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) NA 0 NA 0.473184648997673 65 0.0983850657053506 0 NA NA -5.88992374061686 LTS-004 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.781 1 NA NA NA NA NA LTS-004 chr17 36421727 44159945 7738219 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-004 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.269456105310205 236 0.0567991715514316 0.75772753661285 15056 0.187516363125044 2 2 0 -6.79562931528482 LTS-004 NA NA NA NA LTS-004 chr17 44159946 44172017 12072 * character(0) NA 0 NA 0.548 1 NA NA NA NA NA LTS-004 chr17 44172018 44336993 164976 * character(0) NA 0 NA 0.477420034460672 51 0.0928038073931596 0 NA NA -5.91282417383462 LTS-004 chr17 44336994 44337175 182 * character(0) NA 0 NA 0.349 1 NA NA NA NA NA LTS-004 chr17 44337176 44782225 445050 * character(0) 0.228 1 NA 0.312393517684416 65 0.185044749005789 0 0 0 -6.42981151272781 LTS-004 chr17 44782226 45787959 1005734 * c(MIR5089, EFCAB13, ITGB3, KPNB1, RPRML, MYL4, MRPL45P2, WNT3, WNT9B, NPEPPS, GOSR2, TBKBP1, CDC27) 0.287420236331292 35 0.0909867752880105 0.747476742426497 1032 0.182770368908634 2 2 0 -6.76557014829366 LTS-004 chr17 45787960 45822775 34816 * c(TBX21, TBKBP1) NA 0 NA 0.671479977987968 45 0.128619044413565 1 NA NA -5.78054730982327 LTS-004 chr17 45822776 45885708 62933 * c(OSBPL7, TBX21) NA 0 NA 1.192 1 NA NA NA NA NA LTS-004 chr17 45885709 45913668 27960 * c(OSBPL7, MRPL10, LRRC46) 0 1 NA 1.08314801708173 179 0.207957774270959 4 4 0 -5.76488836660619 LTS-004 chr17 45913669 47579483 1665815 * c(MIR1203, MIR3185, HOXB-AS1, CALCOCO2, HOXB13, IGF2BP1, CBX1, SNF8, FLJ40194, B4GALNT2, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, SP2, PRR15L, CDK5RAP3, SP6, PRAC1, SKAP1, LRRC46, SCRN2) 0.191531971981114 42 0.0604838216627127 1.06723983103779 2308 0.44965472420233 4 4 0 -6.74588114408109 LTS-004 chr17 47579484 62081231 14501748 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, TOB1, SLC35B1, DCAF7, APPBP2, CHAD, TLK2, KAT7, NXPH3, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, EME1, CYB561, ANKFN1, MARCH10, TMEM92, ACE, DLX3, DLX4, SAMD14, PPM1E, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, TANC2, OR4D1, GH1, GH2, LOC284080, C17orf47, GDPD1, NA NA NA NA NA NA NA NA NA LTS-004 HLF, ICAM2, METTL2A, C17orf67, NACA2, SKA2, ITGA3, HILS1, RNF126P1, YPEL2, C17orf82, TOB1-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, TRIM37, NGFR, NME1, NME2, UTP18, RNFT1, TUBD1, TACO1, MRPL27, PDK2, MRPS23, PTRH2, LUC7L3, SEPT4, MBTD1, BCAS3, RNF43, MKS1, LINC00483, EPN3, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, PRR11, TEX14, CA10, CCDC47, PSMC5, INTS2, PCTP, RAD51C, SCPEP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RPS6KB1, SCN4A, HEATR6, XYLT2, SRSF1, SGCA, WFDC21P, SPATA20, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, SCARNA20, SUPT4H1, TBX2, FLJ45513, LOC729683, CA4, MIR454, TRIM25, VEZF1, DHX40, ACSF2, LIMD2, KCNH6, FAM117A, COIL, AKAP1, VMP1, EPX, BRIP1, SPOP, MYCBPAP, KIF2B, USP32, PPP1R9B, PPM1D, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, STRADA, PRR29, NOG, TSPOAP1, TBX4, CD79B, MRC2, MED13) 0.177005345648333 138 0.0541132589114142 1.16330296366279 10569 0.285410889402819 4 4 0 -6.90314721204472 LTS-004 NA NA NA NA LTS-004 chr17 62081232 62081293 62 * c(ICAM2, PRR29) 0.232 1 NA 1.006 1 NA NA NA NA NA LTS-004 chr17 62081294 67501004 5419711 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, PSMD12, SMURF2, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, NA NA NA NA NA NA NA NA NA LTS-004 SLC16A6, PRR29, HELZ) 0.19397119535156 46 0.0511053851024863 1.10951643556159 3498 0.268978913038164 4 4 0 -6.74275263352545 LTS-004 NA NA NA NA LTS-004 chr17 67501005 71757235 4256231 * c(LINC00673, SLC39A11, CDC42EP4, LINC00469, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, SDK2, C17orf80, MAP2K6, CPSF4L, SOX9, SSTR2, FAM104A, COG1) 0.176154594265297 22 0.0317919712699517 1.23583674390434 941 0.317756426418727 5 5 0 -6.87314178054686 LTS-004 chr17 71757236 71819734 62499 * c(LINC00469, LOC400620) NA 0 NA 0.833 1 NA NA NA NA NA LTS-004 chr17 71819735 80363385 8543651 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-004 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 OTOP2, SLC9A3R1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.17792981670743 388 0.0498976613245896 1.1320343462161 13520 0.357441378544079 4 4 0 -6.76938446892713 LTS-004 NA NA NA NA LTS-004 chr17 80363386 80364268 883 * OGFOD3 NA 0 NA 2.137 1 NA NA NA NA NA LTS-004 chr17 80364269 80391534 27266 * c(HEXDC, OGFOD3) 0.181974486640952 3 0.0340196021924615 2.02829767592613 39 0.97843016945065 10 9 1 -6.73901720765832 LTS-004 chr17 80391535 80391633 99 * HEXDC NA 0 NA 0.945 1 NA NA NA NA NA LTS-004 chr17 80391634 81050964 659331 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.167533050967042 33 0.0369306270204178 1.12975080000935 887 0.293389923296723 5 5 0 -6.82323679223428 LTS-004 chr17 81050965 81083625 32661 * METRNL NA 0 NA 1.34497271177893 13 0.223572279369702 5 NA NA -5.76495082689269 LTS-004 chr18 116845 120862 4018 * ROCK1P1 0.245 1 NA 0.509221577778418 27 0.290203131530067 1 1 0 -5.76517415593543 LTS-004 chr18 120863 122129 1267 * ROCK1P1 NA 0 NA 0.458151271002897 37 0.276136997052443 0 NA NA -5.76446447771777 LTS-004 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.638 1 NA NA NA NA NA LTS-004 chr18 122232 3451847 3329616 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.29660029280757 56 0.0546004584681765 0.725960245744254 1617 0.207724765596228 2 2 0 -7.00755718888411 LTS-004 chr18 3451848 3451897 50 * TGIF1 NA 0 NA 1.069 1 NA NA NA NA NA LTS-004 chr18 3451898 7050989 3599092 * c(LINC01387, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LINC00668, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, TGIF1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.300429444603846 44 0.0662010320046282 0.805022033753053 1406 0.264063583948406 2 2 0 -6.86863729179055 LTS-004 chr18 7050990 7079868 28879 * LAMA1 NA 0 NA 0.936 1 NA NA NA NA NA LTS-004 chr18 7079869 8783835 1703967 * c(LOC100192426, RAB12, MTCL1, LAMA1, LRRC30, PTPRM) 0.372375533163236 2 0.0289913780286484 0.962598843106483 314 0.209118535411446 3 2 1 -7.38000301904662 LTS-004 chr18 8783836 8825192 41357 * MTCL1 0.482 1 NA 0.916196794494147 89 0.170439111728928 3 3 0 -5.76539083558031 LTS-004 chr18 8825193 9254319 429127 * c(ANKRD12, MTCL1, NDUFV2) 0.411115585844977 2 0.0551543289325507 0.913035895720365 148 0.198253753650595 3 2 1 -6.75205117269273 LTS-004 chr18 9254320 10699256 1444937 * c(RALBP1, RAB31, APCDD1, ANKRD12, TWSG1, PIEZO2, TXNDC2, NAPG, VAPA, PPP4R1) 0.441840568440603 36 0.0964164907188583 1.12109730378597 945 0.277122668496756 4 2 2 -6.73375830242826 LTS-004 chr18 10699257 10701996 2740 * PIEZO2 NA 0 NA 0.777 1 NA NA NA NA NA LTS-004 chr18 10701997 15004578 4302582 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, ZNF519, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, RNMT) 0.406343834440953 51 0.0659463299310322 0.950510495224956 2125 1.54716638464359 3 2 1 -6.73378050754273 LTS-004 chr18 15004579 15006193 1615 * character(0) NA 0 NA 1.17792938508764 19 0.592506199538223 4 NA NA -5.76441669649451 LTS-004 chr18 18529727 18529872 146 * ROCK1 0.32 1 NA 0.918487821417431 5 0.470633827938452 3 3 0 -5.76441052165244 LTS-004 chr18 18529873 19418474 888602 * c(MIR320C1, ESCO1, ABHD3, MIR1-2, MIR133A1, MIB1, ROCK1, SNRPD1, GREB1L) 0.389431999921654 3 0.0648408307575815 0.94278472393143 600 0.185606960457232 3 2 1 -6.76369856469982 LTS-004 chr18 19418475 19423030 4556 * MIB1 NA 0 NA 0.731 1 NA NA NA NA NA LTS-004 chr18 19423031 23748455 4325425 * c(GATA6-AS1, MIR320C2, MIR4741, OSBPL1A, TTC39C, PSMA8, ANKRD29, ZNF521, CABYR, GATA6, C18orf8, LAMA3, NPC1, IMPACT, MIB1, RBBP8, HRH4, CTAGE1, SS18, LOC729950, TMEM241, RIOK3, CABLES1) 0.274318056661559 25 0.0365965845400906 0.761902404819375 2168 0.1878751352436 2 2 0 -6.75053544718649 LTS-004 chr18 23748456 23748515 60 * PSMA8 NA 0 NA 0.554 1 NA NA NA NA NA LTS-004 chr18 23748516 23758989 10474 * PSMA8 NA 0 NA 0.228547443528769 40 0.155496704145136 0 NA NA -5.8631807396729 LTS-004 chr18 23758990 29206352 5447363 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, KCTD1, AQP4, TAF4B, TTR, PCAT18, CHST9, B4GALT6) 0.275575676106869 32 0.0434726462012831 0.837256163164209 1432 0.214568755816355 2 2 0 -7.14591618983488 LTS-004 chr18 29206353 57136869 27930517 * c(ZSCAN30, SNORD58C, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, MIR5583-2, MIR5583-1, LINC-ROR, ACAA2, ZNF271P, MALT1, MAPRE2, POLI, HAUS1, ALPK2, LOXHD1, INO80C, STARD6, C18orf25, CCBE1, SLC25A52, C18orf54, TCEB3C, DCC, DTNA, ZBTB7C, SKA1, CFAP53, FECH, TRAPPC8, NEDD4L, WDR7, ZNF396, SLC39A6, GALNT1, TPGS2, NA NA NA NA NA NA NA NA NA LTS-004 SETBP1, SNORD58B, SNORD58A, DYNAP, BOD1L2, LINC00907, SIGLEC15, GRP, ST8SIA5, RAX, CXXC1, CPLX4, CCDC178, OACYLP, LMAN1, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, NARS, RNF165, C18orf32, ATP5A1, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RAB27B, RIT2, RPL17, KC6, GAREM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR924HG, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, ZNF24, FHOD3, CCDC68, ASXL3, SLC14A2, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, NOL4, MBD2, PSTPIP2, PIAS2, SEC11C, B4GALT6, TXNL1, LIPG, ONECUT2, CTIF) 0.276763429642847 149 0.0721781421275133 0.769915795906859 10389 0.281137101748667 2 2 0 -6.73846311679287 LTS-004 NA NA NA NA LTS-004 chr18 57136870 57567495 430626 * c(CCBE1, PMAIP1) NA 0 NA 0.777875835589295 23 0.157631004554428 2 NA NA -5.76471221140761 LTS-004 chr18 57567496 57567632 137 * PMAIP1 NA 0 NA 0.84 1 NA NA NA NA NA LTS-004 chr18 57567633 58039760 472128 * c(MC4R, PMAIP1) 0.403 1 NA 1.01520876985856 71 0.191612323442335 3 3 0 -5.80063886990568 LTS-004 chr18 58039761 61394403 3354643 * c(LINC01544, RNF152, PHLPP1, PIGN, KDSR, CDH20, MC4R, SERPINB5, SERPINB13, ZCCHC2, KIAA1468, BCL2, SERPINB3, SERPINB4, TNFRSF11A, SERPINB12, SERPINB11, VPS4B) 0.388809516555125 53 0.0685615791141372 0.930875926766541 1797 0.716499446304938 3 2 1 -6.76370377315563 LTS-004 chr18 61394404 61471662 77259 * SERPINB7 0.491 1 NA 0.975383943772609 39 0.352247560856785 3 3 0 -5.76471813078127 LTS-004 chr18 61471663 61765964 294302 * c(LINC00305, HMSD, SERPINB2, SERPINB8, SERPINB10, SERPINB7) 0.475882380818575 4 0.0197146307768283 0.961142484756778 249 0.236553365344997 4 2 2 -8.43343407953845 LTS-004 chr18 63429836 66346776 2916941 * c(CDH7, MIR5011, CDH19, TMX3, LOC643542, DSEL) 0.460829443986292 4 0.0361754981536767 1.25672245303007 501 0.360179142254198 4 2 2 -7.12249088786197 LTS-004 chr18 66346777 66346791 15 * TMX3 NA 0 NA 1.087 1 NA NA NA NA NA LTS-004 chr18 66346792 77918221 11571430 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.459780423853313 80 0.0581564835790343 1.08873259755432 3288 0.248778379747147 4 2 2 -6.91147559533502 LTS-004 chr18 77918222 78005362 87141 * c(PARD6G-AS1, PARD6G) NA 0 NA 1.01580319485958 39 0.198064606616281 3 NA NA -5.7708070825761 LTS-004 chr19 107416 374330 266915 * c(LINC01002, THEG, MIER2, OR4F17, PLPP2) 0.118 1 NA 1.31194005473113 141 0.272374007198495 5 5 0 -5.76473522934738 LTS-004 chr19 374331 808488 434158 * c(MIR4745, FSTL3, MISP, C2CD4C, SHC2, FGF22, ODF3L2, GZMM, PRSS57, PALM, THEG, POLRMT, RNF126, PTBP1, HCN2, BSG, MADCAM1, TPGS1, CDC34) 0.159892880761136 33 0.0502866404934871 1.28102001370918 762 0.358418899826665 5 5 0 -6.73770677206438 LTS-004 chr19 808489 808562 74 * PTBP1 NA 0 NA 0.621 1 NA NA NA NA NA LTS-004 chr19 808563 880066 71504 * c(MED16, MIR3187, CFD, ELANE, PRTN3, AZU1, PTBP1, PLPPR3) 0.195 1 NA 1.01272963316019 209 0.197509008939947 3 3 0 -5.76923856471925 LTS-004 chr19 880067 886187 6121 * MED16 NA 0 NA 1.0547694246745 21 0.165268756589871 4 NA NA -5.7649212677802 LTS-004 chr19 886188 889592 3405 * MED16 NA 0 NA 0.707 1 NA NA NA NA NA LTS-004 chr19 889593 917526 27934 * c(MED16, KISS1R, R3HDM4) 0.262 1 NA 0.772675080089635 49 0.164255253387239 2 2 0 -5.76441121428634 LTS-004 chr19 917527 8808942 7891416 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4999, EBI3, PLIN3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, NA NA NA NA NA NA NA NA NA LTS-004 GIPC3, NDUFA11, CNN2, PLK5, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, ARID3A, EEF2, EFNA2, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, SMIM24, MIR7-3HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SLC25A41, MBD3L5, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, ANGPTL4, MARCH2, CD320, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, PCSK4, C19orf24, PLEKHJ1, FEM1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STK11, STXBP2, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, TMEM259, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70) 0.267762032716529 359 0.0629855699609933 0.738950778494627 13560 0.588022442359928 2 2 0 -6.76972487026599 LTS-004 NA NA NA NA LTS-004 chr19 8808943 8962315 153373 * c(ZNF558, ACTL9, OR2Z1, MBD3L1, MUC16) 0.333 1 NA 0.746064900387918 95 0.129116479961066 2 2 0 -5.77170064612161 LTS-004 chr19 8962316 9046734 84419 * MUC16 0.251247459257763 22 0.138124575179069 0.798970766383971 376 0.492349327285022 2 2 0 -6.75094565950836 LTS-004 chr19 9046735 9251304 204570 * c(OR7G1, OR1M1, OR7G2, OR7G3, ZNF317, MUC16) 0.269291261948189 67 0.0442122977544401 0.911108508724201 892 0.516445476472253 2 2 0 -6.75531265973359 LTS-004 chr19 9251305 9266566 15262 * ZNF317 NA 0 NA 0.636 1 NA NA NA NA NA LTS-004 chr19 9266567 9408543 141977 * c(OR7D4, OR7D2, OR7E24, ZNF699, ZNF317) 0.276706868267072 3 0.0225462487641145 0.75538550168166 165 0.194082327606445 2 2 0 -6.73773850034758 LTS-004 chr19 9408544 9434930 26387 * c(ZNF559-ZNF177, ZNF699, ZNF559) 0.254 1 NA 0.725104805401627 19 0.0899362997442963 2 2 0 -5.77263300336418 LTS-004 chr19 9434931 13341037 3906107 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, ZNF625-ZNF20, AP1M2, MIR4748, ZNF443, CDKN2D, CARM1, RNASEH2A, KLF1, ZNF266, TMED1, CDC37, FDX1L, NACC1, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, ZNF563, SPC24, ZNF846, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, DNASE2, DNM2, DNMT1, ELAVL3, ZNF627, DAND5, EPOR, FARSA, MAST1, C19orf38, SYCE2, KANK2, NA NA NA NA NA NA NA NA NA LTS-004 GCDH, TSPAN16, SNORD41, ZNF561-AS1, ZNF763, ZNF844, HOOK2, TNPO2, ICAM1, ICAM3, ICAM4, ILF3, JUNB, TMEM205, C3P1, ZNF788, LDLR, ZNF833P, LYL1, MIR199A1, MAN2B1, ASNA1, NFIX, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, WDR83OS, PDE4A, ZNF44, PIN1, S1PR5, ACP5, ZNF562, BEST2, FBXL12, C19orf66, ZNF823, TRMT1, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, ZNF490, DOCK6, RAD23A, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PPAN-P2RY11, MIR638, PRDX2, ICAM5, ZNF812P, TYK2, ZNF878, ZNF20, ZNF69, ZNF121, ZNF136, CACNA1A, ZNF177, YIPF2, C19orf43, ZNF426, ZNF442, CALR, QTRT1, RTBDN, ANGPTL6, FBXW9, WDR83, ELOF1, ZNF559, ATG4D, EIF3G, STX10, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, S1PR2, ZNF561, OLFM2, RAB3D, IER2, KEAP1) 0.264910518143217 142 0.0733259465409092 0.737074020521919 7853 0.208601826824122 2 2 0 -6.86841300943386 LTS-004 NA NA NA NA LTS-004 chr19 13341038 13373728 32691 * CACNA1A NA 0 NA 0.71494944099622 51 0.18320030824531 2 NA NA -5.76805197392088 LTS-004 chr19 13373729 13386627 12899 * CACNA1A NA 0 NA 1.052 1 NA NA NA NA NA LTS-004 chr19 13386628 13418707 32080 * CACNA1A 0.498 1 NA 1.09289707228762 71 0.188694206112756 4 4 0 -5.76477985866282 LTS-004 chr19 13418708 19770774 6352067 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, GIPC1, ILVBL, CYP4F8, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, FAM129C, NR2F6, ADGRL1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, TMEM59L, PGLS, NA NA NA NA NA NA NA NA NA LTS-004 LSM4, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, MIR181C, BORCS8-MEF2B, RAB8A, MYO9B, NDUFB7, NOTCH3, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CCDC130, ELL, PLVAP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 USHBP1, TSSK6, C19orf44, MRI1, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, AP1M1, F2RL3, SAMD1, DCAF15, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, IL27RA, GDF15, TECR, ADGRE5) 0.456358700934967 207 0.0577037747692955 1.07230722754465 10658 0.343378919755763 4 2 2 -6.85524725349708 LTS-004 NA NA NA NA LTS-004 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.633 1 NA NA NA NA NA LTS-004 chr19 19772755 23688052 3915298 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.467834581045336 26 0.0209116824176933 0.965683493541216 1280 0.265366569156146 4 2 2 -8.39818997660428 LTS-004 chr19 23688053 24345121 657069 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.07305977625068 281 0.394069832088524 4 NA NA -5.76942670539378 LTS-004 chr19 28247625 30433618 2185994 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1) 0.448 1 NA 1.03327469317534 257 0.215013133025731 4 4 0 -5.95045955731579 LTS-004 chr19 30433619 35862499 5428881 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, NA NA NA NA NA NA NA NA NA LTS-004 URI1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.444264520426209 83 0.0716806841619673 1.09050892967831 3252 0.265495935885291 4 2 2 -6.77380649318206 LTS-004 NA NA NA NA LTS-004 chr19 35862500 35898772 36273 * LINC01531 0.334602040283247 2 0.0240416305603426 0.559834057584666 40 0.435315181278211 4 3 1 -6.88825132242647 LTS-004 chr19 35898773 37882707 1983935 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF567, ZNF383, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, NA NA NA NA NA NA NA NA NA LTS-004 PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, ZNF527, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.454162029947519 99 0.0750708481421057 1.08385979937695 3796 0.250112189837064 4 2 2 -6.78156470506088 LTS-004 NA NA NA NA LTS-004 chr19 37882708 37903939 21232 * c(ZNF569, ZNF527) 0 2 0 1.62758224976327 51 0.294620399171278 0 0 0 -Inf LTS-004 chr19 37903940 37904075 136 * ZNF569 NA 0 NA 1.023 1 NA NA NA NA NA LTS-004 chr19 37904076 40384193 2480118 * c(LOC100129935, ZNF571-AS1, MIR4530, LOC100631378, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, ZNF573, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, ZNF569, ZNF570, ZNF781, EID2, ZNF540, ECH1, GGN, FBL, ZFP30, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, ZNF571, PAF1, SARS2, SAMD4B, NA NA NA NA NA NA NA NA NA LTS-004 MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, LOC644554, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, WDR87, ZNF607, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.448907469706032 72 0.0446519052757823 1.08017363371682 4293 0.252532173153771 4 2 2 -6.798763512681 LTS-004 NA NA NA NA LTS-004 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.085 1 NA NA NA NA NA LTS-004 chr19 40389650 40405934 16285 * FCGBP 0 1 NA 0.228198507902704 39 0.484548812769999 0 0 0 -5.78052472875667 LTS-004 chr19 40405935 40406033 99 * FCGBP NA 0 NA 1.498 1 NA NA NA NA NA LTS-004 chr19 40406034 47226450 6820417 * c(SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR320E, MIR4323, MIR642B, PCAT19, LOC100505622, LOC100505715, PPP5D1, DACT3-AS1, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, MIR4531, RNU6-66P, LIPE-AS1, TOMM40, CEACAM5, RABAC1, ZNF234, CEACAM3, PPP1R13L, CD3EAP, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, CLASRP, EGLN2, CKM, ZNF526, CLPTM1, CEACAM20, IRGQ, ZNF428, C19orf47, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, DACT3, NA NA NA NA NA NA NA NA NA LTS-004 SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF296, DEDD2, ZNF780B, DMPK, DMWD, MEGF8, CADM4, ERCC1, ERCC2, ERF, AKT2, CYP2G1P, CIC, FBXO46, ETHE1, FOSB, PRG1, CBLC, PLD3, EML2, PRKD2, IRF2BP1, GIPR, ZNF285, LYPD3, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GRIK5, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, FOXA3, ZNF546, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, B3GNT8, IGFL1, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LIPE, BCAM, MAP3K10, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, PAFAH1B3, PLAUR, RAB4B, POU2F2, QPCTL, ATP5SL, PNMAL1, PPP5C, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CEACAM19, PSMC4, CD177, PTGIR, PNMAL2, PRX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SPTBN4, MARK4, PVR, NECTIN2, BCKDHA, RELB, BCL3, RPS19, RTN2, CEACAM1, DMRTC2, TMEM91, HIF3A, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, SNRPD2, MIR641, MIR642A, TGFB1, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, COQ8B, CNTD2, OPA3, ITPKC, B9D2, CALM3, RSPH6A, SYMPK, MIA, TEX101, CCDC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LTBP4, CNFN, FCGBP, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, SHKBP1, ZNF235, LOC93429, GNG8, CD79A) 0.448902827248162 186 0.0644213915800681 1.06977236421287 10946 0.241805217058901 4 2 2 -6.90280300351011 LTS-004 NA NA NA NA LTS-004 chr19 47226451 47259516 33066 * c(STRN4, FKRP) 0.303 1 NA 0.990670290578171 87 0.158793989626201 3 3 0 -5.76595127083005 LTS-004 chr19 47259517 47712537 453021 * c(SNAR-E, SAE1, AP2S1, ZC3H4, ARHGAP35, NPAS1, TMEM160, SLC1A5, FKRP) 0.425 1 NA 1.02811360556712 439 0.188161789671481 3 3 0 -5.81480755762199 LTS-004 chr19 47712538 50464353 2751816 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, SNAR-G2, MIR3191, MIR3190, MIR4324, NAPA-AS1, CARD8-AS1, PTOV1-AS1, GFY, SAE1, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CPT1C, ALDH16A1, NTN5, CRX, CCDC155, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, FCGRT, ATF5, CARD8, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, NA NA NA NA NA NA NA NA NA LTS-004 FUT1, FUT2, INAFM1, IL4I1, CCDC9, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, BBC3, DKKL1, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, GYS1, GLTSCR2, GLTSCR1, EHD2, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, LIG1, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RPL18, RPS11, RRAS, ELSPBP1, LIN7B, SELENOW, SEC1P, SLC8A2, SNRNP70, SULT2B1, SULT2A1, SNORD23, C5AR1, TULP2, CA11, TBC1D17, FUZ, MED25, BCL2L12, GRWD1, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, CYTH2, CCDC114, CGB5, CGB7, CGB8, CD37, DHX34) 0.281429136054777 158 0.0610542362937301 0.734095153396309 6302 0.267252390329237 2 2 0 -6.80280221286086 LTS-004 NA NA NA NA LTS-004 chr19 50464354 50464452 99 * SIGLEC11 NA 0 NA 1.042 1 NA NA NA NA NA LTS-004 chr19 50464453 50475259 10807 * SIGLEC16 0.324323063469156 5 0.0650937785045545 0.559087333853709 37 0.232862143290355 4 3 1 -6.84763456927016 LTS-004 chr19 50475260 50475311 52 * SIGLEC16 NA 0 NA 0.735998996988703 2 0.113137084989848 2 NA NA -5.76441609882997 LTS-004 chr19 50475312 50475385 74 * SIGLEC16 0.291 1 NA 0.801 1 NA NA NA NA NA LTS-004 chr19 50475386 52132749 1657364 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, ZNF473, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, NA NA NA NA NA NA NA NA NA LTS-004 SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, MYH14, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.242087844801249 61 0.0834465831561554 0.820843472130825 2932 0.230484828549556 2 2 0 -6.88977673248461 LTS-004 NA NA NA NA LTS-004 chr19 52132750 52133048 299 * SIGLEC5 NA 0 NA 0.549 1 NA NA NA NA NA LTS-004 chr19 52133049 52196409 63361 * c(SIGLEC14, MIRLET7E, MIR99B, SIGLEC5) 0.29 1 NA 0.383288228336857 39 0.309383643501716 0 0 0 -5.76874851958728 LTS-004 chr19 52196410 52196487 78 * character(0) NA 0 NA 0.737 1 NA NA NA NA NA LTS-004 chr19 52196488 54695163 2498676 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, MIR125A, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, NA NA NA NA NA NA NA NA NA LTS-004 ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 CACNG7, CACNG6, ZNF350, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.249052455235311 120 0.0646669765579222 0.80986915377515 3950 0.286549224692962 2 2 0 -6.86603707421571 LTS-004 NA NA NA NA LTS-004 chr19 54695164 54726241 31078 * c(LILRB3, RPS9, TSEN34, LILRA6) 0.486 1 NA 0.785738358852718 129 0.336055264422571 2 2 0 -5.76444953038914 LTS-004 chr19 54726242 54744209 17968 * c(LILRB3, LILRA6) 0.414731141845827 10 0.0710230791910473 1.11034189154796 47 0.530399869227544 5 3 2 -6.74130510978499 LTS-004 chr19 54744210 54744256 47 * c(LILRB3, LILRA6) NA 0 NA 0.435 1 NA NA NA NA NA LTS-004 chr19 54744257 54746753 2497 * c(LILRB3, LILRA6) 0.352371044635988 2 0.0212132034355964 0.334217164264185 41 0.435443365307412 1 1 0 -6.74096111666269 LTS-004 chr19 54746754 54754227 7474 * LILRA6 NA 0 NA 0.634 1 NA NA NA NA NA LTS-004 chr19 54754228 54799990 45763 * c(MIR4752, LILRB2, LILRB5, LILRA3, LILRA6) 0.310350318579339 2 0.0558614357137372 0.816456317527554 159 0.19412437135716 5 4 1 -6.91162681784328 LTS-004 chr19 54799991 54800103 113 * c(LILRA3, LILRA6) NA 0 NA 0.782 1 NA NA NA NA NA LTS-004 chr19 54800104 54804771 4668 * c(LILRA3, LILRA6) NA 0 NA 0.100873637185793 39 0.142709949038796 0 NA NA -6.03657838892023 LTS-004 chr19 54804772 54818321 13550 * character(0) NA 0 NA 0.807 1 NA NA NA NA NA LTS-004 chr19 54818322 55258925 440604 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.263802436811877 38 0.084935876574303 0.786303702563583 897 0.241100231429374 2 2 0 -6.74463977256431 LTS-004 chr19 55258926 55266503 7578 * c(KIR2DL1, KIR2DL3, KIR2DS4) NA 0 NA 0.122 1 NA NA NA NA NA LTS-004 chr19 55266504 55299856 33353 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.407660854402202 6 0.0587993764139269 0.379018208554943 44 0.322874415135761 3 2 1 -6.89238984890951 LTS-004 chr19 55299857 55301506 1650 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.19 1 NA NA NA NA NA LTS-004 chr19 55301507 59082605 3781099 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, NA NA NA NA NA NA NA NA NA LTS-004 FKBP1AP1, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.260689562299615 198 0.0717223114554941 0.816167714405301 7490 0.546907843339584 2 2 0 -6.7784271476372 LTS-004 NA NA NA NA LTS-004 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.796033792873833 9 0.141323014560419 2 NA NA -5.76444409014376 LTS-004 chr20 68260 278515 210256 * c(C20orf96, DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126, ZCCHC3) 0.231 1 NA 1.02010495591487 201 0.211740057124401 3 3 0 -5.77959024811737 LTS-004 chr20 278516 1559302 1280787 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.459644047452685 35 0.0337237417304563 1.10079853094061 1730 0.260845710436577 4 2 2 -6.96428538557541 LTS-004 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.081 1 NA NA NA NA NA LTS-004 chr20 1569093 1592329 23237 * SIRPB1 NA 0 NA 0.1496104579507 40 0.223092643455813 0 NA NA -6.05585851678098 LTS-004 chr20 1592330 25655264 24062935 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, CST1, CST2, NA NA NA NA NA NA NA NA NA LTS-004 CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SNX5, GNRH2, LOC284788, LOC284798, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, TGM3, THBD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LINC01433, ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.454861630860563 261 0.0393708545878983 1.11565383303363 12460 0.364525314442323 4 2 2 -6.83833293534008 LTS-004 NA NA NA NA LTS-004 chr20 25655265 25753951 98687 * c(ZNF337, FAM182B) 0.391 1 NA 1.09564018139803 83 0.228135003413647 4 4 0 -5.76504620744933 LTS-004 chr20 25753952 26063645 309694 * c(LOC100134868, FAM182A, FAM182B) 0.352038887661392 9 0.059547133525562 1.30200620133821 43 0.762862313390551 4 3 1 -6.74967529865551 LTS-004 chr20 26063646 26063684 39 * FAM182A 0.33 1 NA 3.644 1 NA NA NA NA NA LTS-004 chr20 26063685 26188981 125297 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.408110262816517 12 0.0857958729670712 0.81471663207609 36 0.710152513800481 3 2 1 -6.73779934459102 LTS-004 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.815 2 0 0 NA NA -Inf LTS-004 chr20 29625845 29625876 32 * FRG1BP 0.288 1 NA 1.419 1 NA NA NA NA NA LTS-004 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.343047136999785 18 0.107060257298451 1.11401405772649 40 0.409211220614639 4 3 1 -6.73314659571194 LTS-004 chr20 29652192 30064331 412140 * c(DEFB118, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1) 0.49 1 NA 1.08174667013129 133 0.23268056022747 4 4 0 -5.77045846470382 LTS-004 chr20 30064332 34295845 4231514 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, RBM12, MMP24-AS1, PROCR, MMP24, CEP250, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, CCM2L, SUN5, ROMO1, C20orf173, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, TRPC4AP, GGT7, C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, NA NA NA NA NA NA NA NA NA LTS-004 BPIFB3, EIF6, ASIP, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, SPAG4, MIR644A, BPIFB2, HM13, PDRG1, GDF5, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CPNE1, NFS1, CBFA2T2, BPIFB1, KIF3B, RBM39, TM9SF4) 0.455409698394462 60 0.0309189710107174 1.0888288469447 6466 0.234360694012493 4 2 2 -6.94847484775431 LTS-004 NA NA NA NA LTS-004 chr20 34295846 34713333 417488 * c(CNBD2, EPB41L1, PHF20, SCAND1, NORAD, RBM39) 0.408890988674194 2 0.00212132034355964 0.888820614345796 388 0.200083273824202 3 2 1 -8.91576328400602 LTS-004 chr20 34713334 34775551 62218 * EPB41L1 0.334 1 NA 0.876204553062365 57 0.222557819639542 3 3 0 -5.76905292886521 LTS-004 chr20 34775552 47886701 13111150 * c(ADA, ACOT8, ZNF663P, LOC100131496, LOC100287792, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, LINC00489, SGK2, MYL9, WFDC2, ARFGEF2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, SLC32A1, WFDC3, MROH8, SOGA1, TLDC2, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, CSE1L, ADIG, GTSF1L, WFDC5, WFDC13, EPB41L1, NA NA NA NA NA NA NA NA NA LTS-004 EYA2, DLGAP4, ZHX3, ZMYND8, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, GHRH, TP53TG5, WFDC10B, LINC00494, HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, SLC35C2, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, DDX27, ZNF334, DBNDD2, SULF2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, ZNFX1, NDRG3, SLC12A5, PREX1, NCOA5, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, SLPI, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, SLC2A10, FAM83D, NCOA3, SLA2, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40, TTI1, MAFB) 0.375638786797095 217 0.0616106833383353 0.866347337084008 11813 0.254308315076752 3 2 1 -7.7069751504686 LTS-004 NA NA NA NA LTS-004 chr20 47886702 48260203 373502 * c(SNORD12B, SNORD12C, KCNB1, ZFAS1, ZNFX1, PTGIS, SNORD12, B4GALT5) 0.382753746794062 4 0.133132452843024 1.09691179254711 410 0.269823176373784 4 3 1 -6.78368938477955 LTS-004 chr20 48260204 48301146 40943 * B4GALT5 0.442 1 NA 0.984159771635529 13 0.0927905692599724 3 3 0 -5.76845609417901 LTS-004 chr20 48301147 62831155 14530009 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, TRERNA1, ARFRP1, OGFR-AS1, RGS19, SYCP2, CEBPB, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, TSHZ2, C20orf85, NA NA NA NA NA NA NA NA NA LTS-004 ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, FAM65C, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, SLC9A8, ADNP, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, MOCS3, GNAS, SLCO4A1, NPBWR2, LINC00176, LINC01270, C20orf197, MIR646HG, KCNG1, KCNQ2, TMEM189, TMEM189-UBE2V1, FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR124-3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR133A2, MIR296, MC3R, MYT1, NFATC2, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, BCAS4, ZFP64, ARFGAP1, DOK5, RNF114, SLC2A4RG, PSMA7, PMEPA1, CASS4, SALL4, RAB22A, ZNF512B, PTK6, COL20A1, PTPN1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SNAI1, SRMS, AURKA, TAF4, TCEA2, MIR645, MIR647, TFAP2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TPD52L2, UBE2V1, HAR1A, HAR1B, ZNF217, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, PARD6B, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, DPM1, VAPB, B4GALT5, SPATA2, OSBPL2) 0.447195393286652 299 0.0751129513916769 1.09246576859073 11667 0.266567849418668 4 2 2 -6.82632024675129 LTS-004 NA NA NA NA LTS-004 chr20 62831156 62959313 128158 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.09923791984085 231 0.461652254275101 4 NA NA -5.76455981108137 LTS-004 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.448 1 NA 0.477495076798282 31 0.305452729391101 0 0 0 -5.77135564062228 LTS-004 chr21 9907223 11098763 1191541 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.349715423860787 33 0.107668842036378 0.904681160801653 159 0.550414303069502 4 3 1 -6.84173246769436 LTS-004 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 0.516 1 NA NA NA NA NA LTS-004 chr21 14745307 15399864 654558 * c(MIR3156-3, POTED, ANKRD20A11P, NA) 0.389 1 NA 0.846446692567544 83 0.35634890180525 2 2 0 -5.78928599932831 LTS-004 chr21 15399865 15918700 518836 * c(LIPI, ABCC13, RBM11, SAMSN1, HSPA13) 0.429834349445961 12 0.0416568776379778 0.997259749121611 287 0.358893140535498 4 2 2 -6.79215048649287 LTS-004 chr21 15918701 15954407 35707 * SAMSN1 NA 0 NA 1.13 1 NA NA NA NA NA LTS-004 chr21 15954408 30300874 14346467 * c(LINC01549, MIR4759, RNU6-67P, SAMSN1-AS1, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, C21orf91-OT1, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, SAMSN1, NRIP1, ADAMTS1) 0.456577107558819 31 0.059875246649098 1.12934646105367 2222 0.33873887138405 4 2 2 -6.79059197624423 LTS-004 chr21 30300875 30300876 2 * LTN1 NA 0 NA 1.004 1 NA NA NA NA NA LTS-004 chr21 30300877 32185327 1884451 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, RWDD2B, USP16, CCT8, KRTAP13-1, LINC00189, KRTAP15-1, LTN1, CLDN17, LINC00307, KRTAP13-4, GRIK1, KRTAP8-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, MAP3K7CL, BACH1, GRIK1-AS1, KRTAP24-1, NA NA NA NA NA NA NA NA NA LTS-004 KRTAP27-1, CLDN8) 0.466136663529828 30 0.0263874970393177 1.08649520174301 1270 0.262674814125919 4 2 2 -7.34512189729874 LTS-004 NA NA NA NA LTS-004 chr21 32185328 32201822 16495 * KRTAP8-1 0.342 1 NA 1.27839063322363 9 0.480273619929307 5 5 0 -5.76441810860517 LTS-004 chr21 32201823 32638550 436728 * c(KRTAP11-1, TIAM1, KRTAP19-8) 0.310981714422537 9 0.166979123778327 1.05247865892946 240 0.262570913281336 4 3 1 -6.77257434771666 LTS-004 chr21 32638551 33371123 732573 * c(HUNK, SCAF4, SOD1, TIAM1) 0.485 1 NA 1.10200493842584 269 0.301385895394308 4 4 0 -5.76595225032469 LTS-004 chr21 33371124 45561039 12189916 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, WDR4, HSF2BP, LINC00310, LINC00313, B3GALT5-AS1, OLIG1, TCP10L, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, RRP1B, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, NA NA NA NA NA NA NA NA NA LTS-004 LINC00319, AATBC, DONSON, HUNK, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, AGPAT3, PWP2, EVA1C, PRDM15, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SON, SNORA80A, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TTC3, LINC01548, U2AF1, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, C21orf33, DSCR8, URB1-AS1, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, RSPH1, UMODL1, PAXBP1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.457220264563817 331 0.0450245970189704 1.07768280066096 10866 0.659408354181564 4 2 2 -6.86210313089412 LTS-004 NA NA NA NA LTS-004 chr21 45561040 45564766 3727 * C21orf33 0.395 1 NA 0.977577999357928 17 0.172888245951642 3 3 0 -5.76448182619893 LTS-004 chr21 45564767 48084319 2519553 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, ICOSLG, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PCNT, PFKL, PCBP3, C21orf58, YBEY, TSPEAR, NA NA NA NA NA NA NA NA NA LTS-004 S100B, LOC642852, SLC19A1, SUMO3, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.427647109689349 172 0.0884922306250721 1.05862054154144 4123 0.261229926843243 4 2 2 -6.81568646482798 LTS-004 NA NA NA NA LTS-004 chr21 48084320 48084993 674 * PRMT2 NA 0 NA 0.974904457878548 15 0.182771441970566 3 NA NA -5.76441976217586 LTS-004 chr22 16157787 16157883 97 * character(0) 0.31 1 NA 0.54 1 NA NA NA NA NA LTS-004 chr22 16157884 18609642 2451759 * c(CECR7, CECR5-AS1, FLJ41941, MIR3198-1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, TUBA8, CECR1, ATP6V1E1, PEX26, MICAL3, BID, MIR648, OR11H1, SLC25A18) 0.434474326525702 40 0.0483379595487163 0.988448843471379 1780 0.255753546564023 3 2 1 -7.00158760944242 LTS-004 chr22 18609643 18628436 18794 * TUBA8 0.24 1 NA 1.01761788300167 23 0.181097597777962 3 3 0 -5.76614777334511 LTS-004 chr22 18628437 18628649 213 * character(0) 0.324980002665956 2 0.0120208152801713 1.10872741043632 8 0.512486376125537 20 14 6 -6.77886251071292 LTS-004 chr22 18628650 18628715 66 * character(0) 0.325 1 NA 0.54 1 NA NA NA NA NA LTS-004 chr22 18628716 20305282 1676567 * c(MIR1286, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, PRODH, RANBP1, MRPL40, RTN4R, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, DGCR6L, DGCR2) 0.271333596029836 54 0.0439308307409239 0.753733264592087 2628 0.199282983171544 2 2 0 -6.75447607565071 LTS-004 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.723 1 NA NA NA NA NA LTS-004 chr22 20307254 20398710 91457 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.298615852225613 39 0.212193451191937 0 NA NA -5.9135228159877 LTS-004 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.884 1 NA NA NA NA NA LTS-004 chr22 20717835 39358478 18640644 * c(DDTL, MIR301B, LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, IGLL5, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, TUBA3FP, PIK3IP1, ELFN2, C1QTNF6, ZNF280A, SGSM1, EMID1, ANKRD54, ADORA2A, CRKL, SELENOM, ZNF280B, NA NA NA NA NA NA NA NA NA LTS-004 CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, AIFM3, YDJC, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CCDC116, CABP7, TMPRSS6, DDT, RNF215, APOBEC3A, EWSR1, MORC2, HIC2, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CABIN1, PRAME, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, SDF2L1, PPIL2, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PRR14L, BPIFC, TMEM211, C22orf31, GSTTP1, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, POM121L1P, TXN2, TMEM184B, GGA1, FBXW4P1, SEC14L3, POM121L4P, RGL4, GGT1, GGT5, INPP5J, CYTH4, RSPH14, GNAZ, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, CARD10, UQCR10, POM121L8P, YPEL1, VPREB3, H1F0, SERPIND1, HMOX1, SLC35E4, LOC339666, TEX33, IGLL1, IL2RB, PI4KAP2, KCNJ4, SDC4P, LRRC75B, LOC391322, LGALS1, LGALS2, LIF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 LIMK2, LRRC74B, BCRP2, CHCHD10, LOC400927, SRRD, MIR130B, MB, MCM5, MFNG, MIF, MMP11, MN1, MPST, THAP7-AS1, P2RX6P, PIWIL3, MIAT, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, DRICH1, EIF3L, RTCB, MTFP1, MED15, UPB1, PI4KA, POLR2F, TUG1, CCDC157, MAPK1, ZMAT5, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, PVALB, RAC2, RFPL1, BCR, BCRP3, TMEM191C, ADORA2A-AS1, POM121L10P, FAM227A, LL22NC03-63E9.3, CES5AP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SLC7A4, SMARCB1, SLC2A11, SNRPD3, SOX10, SSTR3, TCN2, TIMP3, TOP1P2, MIR650, MIR658, MIR659, TST, SEC14L6, UBE2L3, VPREB1, XBP1, YWHAH, ZNF70, ZNF74, NOL12, KCTD17, FOXRED2, BAIAP2L2, THAP7, APOL6, APOL5, APOL4, APOL3, LZTR1, SYN3, GUCD1, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TMEM191A, TPST2, C22orf23, MYO18B, GALR3, KLHL22, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 APOL1, THOC5, EIF3D, MTMR3, TOP3B, HPS4, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, ISX, LARGE1, SNAP29, PICK1, GAL3ST1, GTPBP1, RAB36, PPM1F, BMS1P20, DEPDC5, SFI1, JOSD1) 0.276308425496634 398 0.0612617628063579 0.745975094347441 20306 0.190375066701577 2 2 0 -7.11829127527652 LTS-004 NA NA NA NA LTS-004 chr22 39358479 39358525 47 * c(APOBEC3A_B, APOBEC3A) NA 0 NA 0.503 1 NA NA NA NA NA LTS-004 chr22 39358526 39388325 29800 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) NA 0 NA 0.473815661003322 48 0.119569195670087 0 NA NA -5.77882176448677 LTS-004 chr22 39388326 51206426 11818101 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, LOC100506472, NUP50-AS1, MIR4763, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, APOBEC3A_B, PKDREJ, TAB1, SLC25A17, NUP50, TOB2, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, TNFRSF13C, CPT1B, APOBEC3D, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, APOBEC3H, WBP2NL, NA NA NA NA NA NA NA NA NA LTS-004 POLR3H, CYB5R3, TYMP, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, CBX7, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, RPL23AP82, PARVB, NCAPH2, LINC00634, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, MGAT3, SHISA8, ODF3B, NAGA, ATF4, NDUFA6, SNU13, ACR, ACO2, GTSE1, PDGFB, PMM1, A4GALT, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, MKL1, RANGAP1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, CERK, EFCAB6, SREBF2, ST13, TCF20, TEF, TSPO, LOC730668, UPK3A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 WNT7B, MPPED1, CENPM, ALG12, CRELD2, C22orf46, CCDC134, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, LDOC1L, POLDIP3, PHF5A, KIAA1644, SHANK3, TUBGCP6, CACNA1I, NA, LMF2, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, APOBEC3B, CELSR1, PPP6R2, ZBED4, RBX1, SCO2) 0.265367747939127 319 0.0690727350256312 0.745200163397436 13702 0.216076936927913 2 2 0 -6.95125873460137 LTS-004 NA NA NA NA LTS-004 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.637603587306815 51 0.0933818137393727 1 NA NA -5.76815193796011 LTS-004 chrX 2699993 2700027 35 * XG 0.495 1 NA 1.497 1 NA NA NA NA NA LTS-004 chrX 2700028 17043407 14343380 * c(GS1-600G8.3, LINC01546, LINC01203, CLDN34, PIR-FIGF, MIR4770, MIR4767, MSL3, CA5B, CLCN4, ASB11, ASB9, MOSPD2, TCEANC, FAM9A, FAM9B, FAM9C, FANCB, VEGFD, MXRA5, EGFL6, AMELX, VCX, GLRA2, GPM6B, GRPR, HCCS, CA5BP1, ARSH, TLR8-AS1, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, TLR7, TLR8, VCX2, VCX3A, PIGA, GEMIN8, TXLNG, WWC3, PRKX, PRPS2, CTPS2, TMEM27, NLGN4X, NA NA NA NA NA NA NA NA NA LTS-004 ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TBL1X, TMSB4X, MIR651, XG, S100G, PUDP, PNPLA4, ZRSR2, OFD1, PIR, INE2, AP1S2, GYG2, REPS2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.432522223736837 67 0.0866339011924368 0.990237654167713 5694 0.263225175737401 3 2 1 -7.02682655737624 LTS-004 NA NA NA NA LTS-004 chrX 17043408 17047572 4165 * REPS2 NA 0 NA 1.094 1 NA NA NA NA NA LTS-004 chrX 17047573 34645238 17597666 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ZNF645, FAM47A, MAGEB6, DDX53, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, GK, MAGEB18, SH3KBP1, DCAF8L2, MAGEB5, MAP3K15, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, NHS, MBTPS2, NA NA NA NA NA NA NA NA NA LTS-004 PDHA1, PDK3, PHEX, PHKA2, FTHL17, POLA1, PPEF1, RPS6KA3, RS1, SAT1, SCML1, SMS, SCARNA23, CDKL5, LOC729609, ZFX, APOO, CXorf21, KLHL15, TMEM47, REPS2, PCYT1B) 0.409330580805402 64 0.0963564076315979 1.02811879673904 6353 0.24829098262182 3 2 1 -7.69671152567744 LTS-004 NA NA NA NA LTS-004 chrX 34645239 41209446 6564208 * c(LOC100132831, ATP6AP2, MAGEB16, CYBB, CXorf38, DDX3X, FAM47B, NA, HYPM, LINC01281, CFAP47, LANCL3, MPC1L, FTH1P18, FAM47C, OTC, BCOR, PRRG1, MID1IP1, RPGR, NA, DYNLT3, TSPAN7, XK, USP9X, TMEM47, SRPX, MED14, SYTL5) 0.458147939013028 9 0.0273632965850242 1.08187096092558 2480 0.237838634645784 4 2 2 -7.11799781175422 LTS-004 chrX 41209447 41334872 125426 * c(DDX3X, NYX) 0.307 1 NA 1.62989855634789 58 0.311612952043762 7 7 0 -5.76446846692916 LTS-004 chrX 41334873 41374216 39344 * c(NYX, CASK) NA 0 NA 1.061 1 NA NA NA NA NA LTS-004 chrX 41374217 57622607 16248391 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MTRNR2L10, MIR4769, MIR4536-1, HUWE1, PQBP1, SSX3, TIMM17B, RRAGB, EBP, MAGED2, PIM2, WDR45, PRAF2, KLF8, CLCN5, DGKK, FUNDC1, FOXR2, PAGE3, USP27X-AS1, FAAH2, ZXDB, RIBC1, USP51, SPIN3, XAGE3, XAGE5, NUDT10, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPR82, GPKOW, APEX2, PCSK1N, SSX6, NA NA NA NA NA NA NA NA NA LTS-004 SSX7, SSX8, SSX9, GPR34, CCDC22, MAGEH1, UBQLN2, HSD17B10, ERAS, ZNF81, ITIH6, ARAF, KCND1, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAOA, MAOB, UQCRBP1, NDP, SPIN2B, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PFKFB1, PLP2, GPR173, SPIN2A, NDUFB11, GNL3L, FAM120C, LINC01420, NUDT11, OTUD5, KRBOX4, CHST7, GRIPAP1, ZNF630, MIR362, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 MIR500A, MIR501, MIR502, SHROOM4, RBM3, RP2, DUSP21, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, SNORA11, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, KDM6A, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, EFHC2, PPP1R2P9, MAGED4B, USP11, RBM10, KDM5C, SMC1A, UXT, SLC9A7, CCNB3, INE1, CASK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.378137573277886 93 0.0836987281390769 1.078948482869 10665 0.243107193135517 4 3 1 -7.06927814788101 LTS-004 NA NA NA NA LTS-004 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 1.03579984056652 126 0.289444726526993 4 NA NA -5.7787259824601 LTS-004 chrX 61999880 64136695 2136816 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, MTMR8, ZC4H2, LINC01278) 0.414 1 NA 0.824866153246205 525 0.183733570916663 2 2 0 -5.91627653398395 LTS-004 chrX 64136696 83129122 18992427 * c(MIR374B, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, VSIG4, COX7B, MAP2K4P1, OTUD6A, UPRT, MAGEE2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, FAM46D, DLG3, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, BRWD3, ITGB1BP2, GJB1, FAM155B, INGX, P2RY10, CXCR3, LPAR4, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, NA NA NA NA NA NA NA NA NA LTS-004 RPS26P11, PGAM4, MIR374A, CITED1, MSN, NAP1L2, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, POU3F4, ATRX, ERCC6L, GDPD2, JPX, HDAC8, ZC4H2, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, HMGN5, LAS1L, FRMD8P1, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 STARD8, HEPH, MED12) 0.260396502811052 43 0.0618026634841251 0.793042565986564 8516 0.179810138891792 2 2 0 -6.97404400248946 LTS-004 NA NA NA NA LTS-004 chrX 83129123 117054395 33925273 * c(ARMCX4, UBE2DNL, LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, TMSB15A, MID2, CHM, SLC6A14, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, APOOL, HDX, RBMXL3, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, AMOT, TCEAL6, H2BFWT, DCX, TIMM8A, DIAPH2, DRP2, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, CENPI, IL1RAPL2, BEX3, NA NA NA NA NA NA NA NA NA LTS-004 NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, RAB40AL, H2BFM, LOC286437, FAM133A, TMSB15B, GUCY2F, RPA4, HNRNPH2, HTR2C, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, SATL1, ZCCHC16, LHFPL1, IL13RA2, ARL13A, SLC25A53, LINC00890, XKRX, GLRA4, XRCC6P5, NAP1L3, PAK3, TCEAL9, RAB9B, LUZP4, ARMCX1, ARMCX3, CPXCR1, PLP1, PLS3, TAF7L, ARMCX6, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF5, NXF4, NXF3, KLHL4, TEX13B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, RGAG1, LRCH2, TMEM35A, RPL36A, TNMD, BRDTP1, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, BTK, TDGF1P3, TSPAN6, TRPC5, ZNF711, RNF128, MORC4, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, CAPN6, TMEM164, ZMAT1, BEX2, IRS4, TCEAL3, KLHL13, TGIF2LX, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, SYTL4, MORF4L2, GPRASP1, ARMCX2, AMMECR1) 0.272428525469464 102 0.0677574850566897 0.821356359866659 10992 0.299549919653561 2 2 0 -7.45148441451685 LTS-004 NA NA NA NA LTS-004 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.689 1 NA NA NA NA NA LTS-004 chrX 117079357 140270355 23190999 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR320D2, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, NA, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, LDOC1, CT47A11, FAM127B, SNORA69, NA NA NA NA NA NA NA NA NA LTS-004 SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-004 HS6ST2, FRMD7, KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.273886626080334 97 0.0757078920765888 0.776041027278632 9582 0.202445487123188 2 2 0 -6.73627311885071 LTS-004 NA NA NA NA LTS-004 chrX 140270356 148851528 8581173 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, MIR514B, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, FMR1, AFF2, LDOC1, IDS, UBE2NL, MAGEA11, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, TMEM185A, SLITRK2, TMEM257, CXorf40A, MAGEC1) 0.268341216696518 23 0.0991769887565368 0.8285937964545 1738 0.341538125649833 2 2 0 -6.93631222333835 LTS-004 chrX 148851529 148853651 2123 * character(0) NA 0 NA 0.26 1 NA NA NA NA NA LTS-004 chrX 148853652 149014081 160430 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.546413456111582 39 0.216205886032725 1 NA NA -5.78213280070717 LTS-004 chrX 149014082 149014097 16 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.752 1 NA NA NA NA NA LTS-004 chrX 149014098 154507173 5493076 * c(CSAG4, SMIM9, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, NA NA NA NA NA NA NA NA NA LTS-004 MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA12, MECP2, MPP1, MTCP1, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, IKBKG, MTMR1, FATE1, FAM50A, FAM58A, GPR50) 0.260545456013287 74 0.0718490965105457 0.805318475134439 6774 0.300096236837443 2 2 0 -6.8154024156471 LTS-004 NA NA NA NA LTS-004 chrX 154507174 154774986 267813 * c(CLIC2, TMLHE) NA 0 NA 0.772287976683132 107 0.990451803736355 2 NA NA -5.76441067689214 LTS-004 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0596213752102088 25 0.021426463388374 0 NA NA -26.9135711325596 LTS-004 chrY 13309514 13310660 1147 * character(0) 0.393 1 NA 1.21105127752185 10 1.07005034149489 5 5 0 -5.76441289075141 LTS-004 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.11010594400478 3 0.315233246977536 4 NA NA -5.76441020226702 LTS-004 chr1 65893 69511 3619 * OR4F5 0.482 1 NA 4.19256997826427 2 2.97196980132706 18 18 0 -5.76441022739377 LTS-005 chr1 69512 1608309 1538798 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, NA NA NA NA NA NA NA NA NA LTS-005 PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.272599010822087 136 0.115448319082977 1.3697390995311 3130 0.56754814892204 5 4 1 -6.79852022794675 LTS-005 NA NA NA NA LTS-005 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.188 1 NA NA NA NA NA LTS-005 chr1 1630372 1639726 9355 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.382640876880151 8 0.0562683303466524 0.701604217685421 89 0.610912586383885 5 3 2 -6.74108197449086 LTS-005 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 4.395 1 NA NA NA NA NA LTS-005 chr1 1643792 1659653 15862 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.342261751689065 13 0.118276186995762 1.58670526736477 96 1.34253362592244 6 4 2 -6.73304898419368 LTS-005 chr1 1659654 1659669 16 * c(SLC35E2B, SLC35E2) NA 0 NA 0.796 1 NA NA NA NA NA LTS-005 chr1 1659670 1662163 2494 * c(SLC35E2B, SLC35E2) 0.281770792778054 3 0.143583889532682 0.853407672921394 46 0.326681680370747 4 3 1 -6.73415608640822 LTS-005 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 1.248 1 NA NA NA NA NA LTS-005 chr1 1663709 2577005 913297 * c(LOC100129534, NA, TTC34, RER1, LOC115110, FAM213B, CALML6, FAAP20, GABRD, GNB1, TMEM52, HES5, PEX10, PANK4, PRKCZ, SKI, NADK, SLC35E2B, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, SLC35E2) 0.276157659342898 73 0.125455272885091 1.37834523803036 1689 0.48297650634974 5 4 1 -6.80002617692872 LTS-005 chr1 2577006 2700164 123159 * TTC34 NA 0 NA 0.889 1 NA NA NA NA NA LTS-005 chr1 2700165 3651438 951274 * c(TTC34, MIR4251, TPRG1L, ACTRT2, MEGF6, ARHGEF16, LINC00982, WRAP73, PRDM16, MIR551A, TP73) 0.294800785794657 40 0.206016547754587 1.02613919143027 870 0.806693640446724 4 3 1 -6.73568585480996 LTS-005 chr1 3651439 3662208 10770 * c(TP73-AS1, TP73) 0.408 1 NA 0.957413355638813 35 0.146889931924691 4 4 0 -5.76802915265339 LTS-005 chr1 3662209 3774138 111930 * c(CCDC27, DFFB, SMIM1, TP73-AS1, LRRC47, CEP104) 0.446987851483637 30 0.0870798286156107 0.942368276635557 348 0.349754957293976 4 2 2 -6.99106752750834 LTS-005 chr1 3774139 3777047 2909 * DFFB 0 1 NA 0.943620973103536 9 0.1859469757156 3 3 0 -5.76509713517823 LTS-005 chr1 3777048 5716393 1939346 * c(LINC01134, MIR4417, DFFB, LOC284661, C1orf174, AJAP1, LINC01346) 0.253228779320587 13 0.216089339311551 0.988177720394813 180 0.273437895928595 4 3 1 -6.84044622525746 LTS-005 chr1 5716394 5922837 206444 * MIR4689 0.433 1 NA 0.940863960596204 6 0.119539812057183 3 3 0 -5.87454156950595 LTS-005 chr1 5922838 6524655 601818 * c(MIR4252, ACOT7, ICMT, CHD5, NPHP4, GPR153, RNF207, HES3, HES2, RPL22, ESPN, KCNAB2, TNFRSF25) 0.388738877004765 49 0.161725193662911 0.969769204148892 1256 0.352190711953181 4 2 2 -6.76039541604488 LTS-005 chr1 6524656 6524757 102 * TNFRSF25 0 1 NA 1.33934271105783 3 1.57235587574824 5 5 0 -5.76441015909345 LTS-005 chr1 6524758 6534238 9481 * c(PLEKHG5, TNFRSF25) 0.232281523993823 10 0.223243663590556 1.12122687746664 136 1.1686757147993 5 4 1 -6.73336472622654 LTS-005 chr1 6534239 6537602 3364 * PLEKHG5 0.431 1 NA 1.0601734569196 21 0.392233093963271 4 4 0 -5.76441097669169 LTS-005 chr1 6537603 6580006 42404 * PLEKHG5 0.427480315494161 3 0.0441172679722275 0.97377321788481 39 0.222539150295639 4 2 2 -7.14881500407512 LTS-005 chr1 6580007 9658465 3078459 * c(ENO1-AS1, UTS2, PARK7, PHF13, SLC2A7, TMEM201, ENO1, CAMTA1, ZBTB48, TNFRSF9, MIR34A, RERE, SLC45A1, ERRFI1, DNAJC11, PLEKHG5, SLC2A5, CA6, NOL9, GPR157, SPSB1, TAS1R1, SLC25A33, PER3, THAP3, VAMP3, H6PD, KLHL21) 0.434975623700587 101 0.0965526327506874 0.897180559639917 2539 0.381849287413545 3 2 1 -7.20230813452312 LTS-005 chr1 9658466 9662927 4462 * TMEM201 0 1 NA 0.973418360490944 31 0.877463456948248 4 4 0 -5.76444045196014 LTS-005 chr1 9662928 9787681 124754 * c(TMEM201, PIK3CD, PIK3CD-AS1) 0.191397973527272 9 0.215265533701984 0.964713849477469 305 0.522699992728735 5 4 1 -6.78359723665985 LTS-005 chr1 9787682 9788153 472 * PIK3CD 0.429 1 NA 0.606889978663086 5 0.319053757225957 2 2 0 -5.76441024264697 LTS-005 chr1 9788154 11103408 1315255 * c(APITD1-CORT, UBE4B, MASP2, RBP7, CORT, C1orf127, DFFA, CLSTN1, KIF1B, TARDBP, CENPS, PEX14, PGD, PIK3CD, CASZ1, CTNNBIP1, NMNAT1, LZIC) 0.428146420534626 49 0.130245428321456 0.906408163781667 1807 0.271965352023654 3 2 1 -6.99363437613627 LTS-005 chr1 11103409 11137458 34050 * c(MASP2, EXOSC10, SRM) 0 1 NA 0.910858151342359 113 0.310738499100142 3 3 0 -5.7658099381351 LTS-005 chr1 11137459 11782781 645323 * c(MTOR-AS1, ANGPTL7, MAD2L2, MTOR, FBXO2, FBXO6, UBIAD1, DRAXIN, EXOSC10, DISP3, FBXO44) 0.212277843119216 10 0.212018343021961 0.924800282083943 998 0.478668256154986 4 3 1 -6.83899966367661 LTS-005 chr1 11782782 11783295 514 * character(0) 0.478 1 NA 0.982190834228914 7 0.37719270053029 4 4 0 -5.76442555086391 LTS-005 chr1 11783296 12835214 1051919 * c(NPPA-AS1, MIR4632, CLCN6, AADACL3, AADACL4, PRAMEF12, MTHFR, NPPA, NPPB, PLOD1, VPS13D, AGTRAP, MIIP, SNORA59B, TNFRSF1B, KIAA2013, DHRS3, C1orf158, TNFRSF8, MFN2) 0.380519012954617 49 0.146808870262512 0.934979391036742 1967 0.441079994353701 4 2 2 -6.79277359819008 LTS-005 chr1 12835215 13742998 907784 * c(HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA) 0.340609274375402 29 0.153400358378783 1.08397835699258 149 0.715084871269197 4 2 2 -6.79397893618857 LTS-005 chr1 13742999 13802019 59021 * c(LRRC38, PRAMEF20) 0.452 1 NA 0.968615942912041 13 0.565541684967516 4 4 0 -5.76548050765489 LTS-005 chr1 13802020 16346082 2544063 * c(PDPN, CTRC, FHAD1, CLCNKA, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.438506138828435 99 0.0937255243938517 1.01459292652916 2349 0.461442238590741 4 2 2 -6.91099554173693 LTS-005 chr1 16346083 16349043 2961 * c(CLCNKA, HSPB7) NA 0 NA 2.096 1 NA NA NA NA NA LTS-005 chr1 16349044 16360308 11265 * c(CLCNKA, CLCNKB) 0.331380776652721 3 0.0360739980225832 1.54990932124575 89 0.358036097751548 9 6 3 -6.75796529308991 LTS-005 chr1 16360309 16360316 8 * c(CLCNKA, CLCNKB) 0.425 1 NA 0.626 1 NA NA NA NA NA LTS-005 chr1 16360317 16459965 99649 * c(CLCNKA, CLCNKB, EPHA2, FAM131C) 0.422743125399206 20 0.0593920072595277 1.27143236456635 232 9.48479368066988 17 9 8 -6.91131822090098 LTS-005 chr1 16459966 16723084 263119 * c(ARHGEF19, EPHA2, SZRD1, SPATA21, FBXO42, RSG1) 0.458201776153519 14 0.0312051876498722 0.969567297226071 462 0.234779095193796 4 2 2 -8.78626792173287 LTS-005 chr1 16723085 16725984 2900 * c(SZRD1, SPATA21) 0 1 NA 1.05837678065786 39 0.56199174068592 4 4 0 -5.76441065376468 LTS-005 chr1 16725985 16976127 250143 * c(MST1P2, CROCCP3, SPATA21, NBPF1, NECAP2, CROCCP2) 0.359065225485368 26 0.139619620618087 1.00230994190842 246 0.340383921384783 4 2 2 -6.76703230139429 LTS-005 chr1 16976128 16976208 81 * MST1P2 NA 0 NA 0.511 1 NA NA NA NA NA LTS-005 chr1 16976209 16978916 2708 * MST1P2 0.401726306426673 7 0.0795648881641358 0.635154983637843 62 0.309118396793822 2 1 1 -6.7468170918335 LTS-005 chr1 16978917 17009683 30767 * character(0) NA 0 NA 2.213 1 NA NA NA NA NA LTS-005 chr1 17009684 17046605 36922 * ESPNP 0.302427619611235 11 0.067215122757254 2.2849212573985 126 0.748278180213834 7 5 2 -6.73579751511723 LTS-005 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.952 1 NA NA NA NA NA LTS-005 chr1 17081542 18661397 1579856 * c(MST1L, PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.337873699032022 63 0.159721394018201 1.13012282281634 1469 0.877927899398443 5 3 2 -6.79616931654048 LTS-005 chr1 18661398 18807897 146500 * c(KLHDC7A, IGSF21) 0.499 1 NA 1.08866360191344 53 0.320173957161888 4 4 0 -5.76470376975293 LTS-005 chr1 18807898 19223560 415663 * c(MIR4695, KLHDC7A, PAX7, TAS1R2, ALDH4A1) 0.395435774531595 37 0.161073547448635 1.17760109195769 444 0.92546375149389 4 2 2 -6.73654080593638 LTS-005 chr1 19223561 19228933 5373 * ALDH4A1 NA 0 NA 1.003 1 NA NA NA NA NA LTS-005 chr1 19228934 21544601 2315668 * c(LOC100506730, MINOS1-NBL1, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.41902708811456 105 0.134111820519037 1.02278459089947 3282 0.321836317076166 4 2 2 -6.78741672933722 LTS-005 chr1 21544602 21545778 1177 * ECE1 0.39 1 NA 1.11063634256973 21 0.334722173351772 4 4 0 -5.76441946376481 LTS-005 chr1 21545779 21810786 265008 * c(LOC100506801, ECE1, NBPF3) 0.139228490577293 9 0.183542305144557 1.12790780048959 284 0.999155697843345 3 3 0 -6.78532468076274 LTS-005 chr1 21810787 21889635 78849 * c(ALPL, NBPF3) 0.439 1 NA 1.27534295825376 20 0.377652510147957 5 5 0 -5.76451039945376 LTS-005 chr1 21889636 23285489 1395854 * c(MIR4253, MIR4684, CELA3A, EPHA8, EPHB2, CELA3B, ALPL, LINC00339, HSPG2, LDLRAD2, WNT4, RAP1GAP, C1QA, C1QB, C1QC, USP48, ZBTB40, CDC42) 0.313223913017086 32 0.208707347873647 1.06471689808695 1788 0.496405667224643 4 3 1 -6.7436026710996 LTS-005 chr1 23285490 23337616 52127 * C1orf234 0.473 1 NA 1.06654519475876 21 0.246405067202071 4 4 0 -5.76441223750367 LTS-005 chr1 23337617 24706269 1368653 * c(MIR3115, TCEB3-AS1, MIR378F, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, KDM1A, FUCA1, GALE, MDS2, LOC284632, HMGCL, HTR1D, ID3, ASAP3, PNRC2, PITHD1, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, C1orf234, LUZP1, ZNF436, STPG1) 0.414177998563775 94 0.119001547142778 1.02599107652337 2358 0.396188568501737 4 2 2 -6.76707585488395 LTS-005 chr1 24706270 24706292 23 * STPG1 0.382 1 NA 2.294 1 NA NA NA NA NA LTS-005 chr1 24706293 24797424 91132 * c(NIPAL3, STPG1) 0.282900572063024 9 0.2370764644582 1.03291412648621 178 0.516233132031445 4 3 1 -6.73334306494538 LTS-005 chr1 24797425 24859665 62241 * c(RCAN3AS, RCAN3, NIPAL3) 0.494 1 NA 0.992875370151234 57 0.289436691473157 4 4 0 -5.76682358463118 LTS-005 chr1 24859666 24862679 3014 * RCAN3 0.486767984503501 4 0.011295279249905 1.14720194000365 28 0.308046350786378 4 2 2 -15.0096521399114 LTS-005 chr1 24862680 25599157 736478 * c(SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, RHD, RUNX3) 0.356309536606192 9 0.209034088129185 0.949055117475597 567 0.333754796857848 3 2 1 -6.79217469490102 LTS-005 chr1 25599158 25656954 57797 * c(RSRP1, RHD) 0.297988845187997 4 0.218067267909087 1.85416857995511 77 0.632491345759527 7 5 2 -6.73358518396458 LTS-005 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.199 1 NA NA NA NA NA LTS-005 chr1 25666924 26752992 1086069 * c(MIR3917, CNKSR1, CD52, PDIK1L, PAQR7, EXTL1, TMEM50A, ZNF683, LDLRAP1, CATSPER4, STMN1, PAFAH2, ZNF593, AIM1L, TMEM57, MTFR1L, MAN1C1, SELENON, RHCE, LOC646471, CEP85, SLC30A2, AUNIP, LIN28A, FAM110D, SH3BGRL3, TRIM63, UBXN11) 0.416247558528913 71 0.131544396954873 1.02259889462565 1947 0.340113678502351 4 2 2 -6.76837060091967 LTS-005 chr1 26752993 26755396 2404 * LIN28A 0 1 NA 0.93348189123377 41 0.174414413982555 3 3 0 -5.76494145479391 LTS-005 chr1 26755397 27620600 865204 * c(MIR1976, NUDC, FAM46B, KDF1, WDTC1, SFN, HMGN2, TRNP1, GPN2, PIGV, RPS6KA1, GPATCH3, SLC9A1, LIN28A, DHDDS, ARID1A, ZDHHC18, NR0B2) 0.268669655329916 11 0.243025251213269 1.02672476559253 1156 0.324372348184814 4 3 1 -6.74383715989316 LTS-005 chr1 27620601 27660568 39968 * c(WDTC1, ACTG1P20, TMEM222) 0.499 1 NA 1.08693650378276 113 0.260231131766708 4 4 0 -5.76451148605601 LTS-005 chr1 27660569 27736478 75910 * c(WASF2, GPR3, CD164L2, TMEM222, SYTL1, FCN3, MAP3K6) 0.473378559527579 4 0.0275242317482856 1.04766986903406 476 0.206242422422553 4 2 2 -9.87559633128162 LTS-005 chr1 27736479 27736488 10 * WASF2 0.383 1 NA 0.333 1 NA NA NA NA NA LTS-005 chr1 27736489 29070509 1334021 * c(WASF2, GMEB1, RCC1, RAB42, FAM76A, EYA3, FGR, DNAJC8, STX12, IFI6, RNU11, AHDC1, SMPDL3B, YTHDF2, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1, THEMIS2) 0.411642006509695 39 0.126305891143889 0.965003257018036 1895 0.340168132374164 4 2 2 -6.82235494129822 LTS-005 chr1 29070510 29508456 437947 * c(EPB41, TMEM200B, OPRD1, YTHDF2, SRSF4) 0.395369735029864 3 0.0402160830182818 1.24117551727247 289 0.299713886416817 4 2 2 -6.80986227926595 LTS-005 chr1 29508457 29527023 18567 * c(MECR, SRSF4) 0 1 NA 1.33485171002324 37 0.385449001078525 5 5 0 -5.76446984059056 LTS-005 chr1 29527024 29610534 83511 * c(PTPRU, MECR) 0.34 1 NA 1.34332445667504 110 0.277286878540695 5 5 0 -5.76518777633936 LTS-005 chr1 29610535 29611201 667 * PTPRU NA 0 NA 1.62 1 NA NA NA NA NA LTS-005 chr1 29611202 32265776 2654575 * c(MATN1-AS1, MIR4254, MIR4420, PTPRU, COL16A1, LINC01225, FABP3, LINC01226, HCRTR1, SERINC2, MATN1, ZCCHC17, PEF1, ADGRB2, TINAGL1, SNORD103C, SNORD103A, LAPTM5, NKAIN1, SPOCD1, SNRNP40, SDC3, PUM1) 0.296258907249422 49 0.157958171721521 1.4924965242747 1768 0.620460859560186 6 4 2 -6.78450242215435 LTS-005 chr1 32265777 33985353 1719577 * c(FAM229A, MIR3605, KHDRBS1, AZIN2, TMEM54, CSMD2, RNF19B, A3GALT2, DCDC2B, ZNF362, PHC2, TXLNA, AK2, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, TRIM62, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, ZSCAN20, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.308455379714584 32 0.127441633541309 1.36557146695899 2679 0.373317491055936 6 4 2 -6.86442411667947 LTS-005 chr1 33985354 33992805 7452 * CSMD2 0 1 NA 1.69197139613204 21 1.14440820223089 7 7 0 -5.76441480464804 LTS-005 chr1 33992806 34192200 199395 * CSMD2 0.0260288988348241 10 0.093603418740984 1.48684571290875 316 0.973273616760558 8 8 0 -6.75682345607073 LTS-005 chr1 34192201 34209004 16804 * CSMD2 0.365 1 NA 1.54793519241876 17 0.39821585559475 6 6 0 -5.76442224553121 LTS-005 chr1 34209005 35226731 1017727 * c(CSMD2, GJB4, HMGB4, GJB5, CSMD2-AS1, C1orf94) 0.35003108150855 7 0.158137824155296 1.46539219959115 235 0.465038778337181 6 4 2 -6.73941834174824 LTS-005 chr1 35226732 36386064 1159333 * c(TMEM35B, SMIM12, GJB4, C1orf216, AGO4, NCDN, AGO1, GJA4, GJB3, TFAP2E, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.371010370428597 40 0.194543830339276 1.02974254760887 1778 0.334705984981082 4 2 2 -6.74709108878788 LTS-005 chr1 36386065 36474618 88554 * c(AGO3, AGO1) 0.471 1 NA 0.949136152484277 129 0.196091495574459 4 4 0 -5.78379909679691 LTS-005 chr1 36474619 36642361 167743 * c(COL8A2, AGO3, TRAPPC3, TEKT2, ADPRHL2, MAP7D1) 0.456481948211921 17 0.0333431358135727 0.98479402547822 367 0.249274919511642 4 2 2 -8.51251100678256 LTS-005 chr1 36642362 36770439 128078 * c(MAP7D1, THRAP3) 0 1 NA 0.971047614950258 133 0.236902556701296 4 4 0 -5.77695687578386 LTS-005 chr1 36770440 38261197 1490758 * c(MIR4255, MIR5581, OSCP1, CSF3R, MANEAL, RSPO1, EPHA10, GRIK3, GNL2, C1orf109, CDCA8, EVA1B, MEAF6, MRPS15, LINC01137, DNALI1, SH3D21, SNIP1, ZC3H12A, STK40, LSM10, THRAP3) 0.270753842749794 34 0.227093084796104 1.0567979384775 1519 0.494955786953118 4 3 1 -6.7360361275634 LTS-005 chr1 38261198 38265622 4425 * MANEAL 0.499 1 NA 0.973561643841903 27 0.358855711466909 4 4 0 -5.76458932353527 LTS-005 chr1 38265623 43218013 4952391 * c(NFYC-AS1, MIR3659, SLFNL1-AS1, GJA9-MYCBP, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, TMCO2, ZNF684, C1orf122, COL9A2, MANEAL, CLDN19, CTPS1, CITED4, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, MACF1, MYCBP, HEYL, RIMKLA, GUCA2A, GUCA2B, LINC01343, ZFP69, BMP8A, INPP5B, MIR30C1, MIR30E, MTF1, MYCL, NDUFS5, NFYC, YBX1, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, PPT1, HIVEP3, RLF, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, NA NA NA NA NA NA NA NA NA LTS-005 EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, CCDC30, AKIRIN1, YRDC, PPCS, ZMYND12, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3) 0.414109718110166 84 0.1192667981195 1.00913608926132 5303 0.310417360369287 4 2 2 -6.85788248014313 LTS-005 NA NA NA NA LTS-005 chr1 43218014 43222080 4067 * P3H1 0 1 NA 1.21745347922983 23 0.391667288424926 5 5 0 -5.7644749475834 LTS-005 chr1 43222081 43875958 653878 * c(LOC100129924, EBNA1BP2, MED8, ERMAP, TMEM125, CFAP57, C1orf210, SZT2, SVBP, MPL, SLC2A1-AS1, FAM183A, ZNF691, P3H1, ELOVL1, SLC2A1, TIE1, C1orf50, CDC20) 0.33940777322368 14 0.216085262476044 1.03936311400297 1095 0.380832087813157 4 2 2 -6.76740433481165 LTS-005 chr1 43875959 43880723 4765 * SZT2 NA 0 NA 1.22 1 NA NA NA NA NA LTS-005 chr1 43880724 43900016 19293 * SZT2 0.224084624034716 2 0.304763022691402 1.14211707244732 184 0.327070287014729 5 4 1 -6.73583882114881 LTS-005 chr1 43900017 43916642 16626 * SZT2 0.488 1 NA 1.15624076720359 163 0.200339829444836 4 4 0 -5.76595018696485 LTS-005 chr1 43916643 44086908 170266 * c(SZT2, PTPRF, HYI) 0.438407117400154 5 0.0406472631304987 1.17820753326999 256 0.259837374167176 4 2 2 -7.50577300377703 LTS-005 chr1 44086909 44087507 599 * PTPRF NA 0 NA 1.032 1 NA NA NA NA NA LTS-005 chr1 44087508 45981512 1894005 * c(KDM4A-AS1, MIR5584, TESK2, KIF2C, TOE1, PLK3, CCDC163, KLF17, CCDC24, BTBD19, DPH2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, LINC01144, MUTYH, PRDX1, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, RPS8, ST3GAL3, SLC6A9, UROD, ERI3, TMEM53, HECTD3, HPDL, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A) 0.393640478314162 51 0.1611133543229 1.03207549099288 2485 0.292012557508324 4 2 2 -6.74955923922651 LTS-005 chr1 45981513 46034291 52779 * c(AKR1A1, PRDX1) 0 1 NA 1.0216772308644 35 0.412394477463044 4 4 0 -5.76478715619798 LTS-005 chr1 46034292 46655513 621222 * c(TSPAN1, AKR1A1, CCDC17, MAST2, IPP, NASP, TMEM69, POMGNT1, GPBP1L1, RPS15AP10, PIK3R3) 0.264112603720712 12 0.229416833151653 1.00004893011795 810 0.29804855400401 4 3 1 -6.75670795788565 LTS-005 chr1 46655514 46659363 3850 * POMGNT1 0.475 1 NA 1.15624254173187 37 0.222218533377791 4 4 0 -5.76470000460704 LTS-005 chr1 46659364 47395726 736363 * c(EFCAB14-AS1, MKNK1-AS1, LRRC41, DMBX1, KNCN, MOB3C, CYP4A11, CYP4B1, CYP4Z2P, FAAH, TEX38, NSUN4, LURAP1, POMGNT1, ATPAF1, FAAHP1, UQCRH, RAD54L, MKNK1, EFCAB14) 0.408573414216912 27 0.150035124092789 1.0558464201918 1181 0.313855713129483 4 2 2 -6.7432032483859 LTS-005 chr1 47395727 47398496 2770 * CYP4A11 0.355 1 NA 1.03256633277479 17 0.524160820909452 4 4 0 -5.76441728959455 LTS-005 chr1 47398497 47716486 317990 * c(LINC00853, PDZK1IP1, CYP4A11, CYP4Z1, CYP4X1, CYP4A22, STIL, TAL1) 0.207196962769725 9 0.211797662876624 1.04127822734213 395 0.43737185604626 5 4 1 -6.79268474027936 LTS-005 chr1 47716487 47717189 703 * STIL 0.495 1 NA 1.01540281030592 13 0.194128162793922 4 4 0 -5.76443938730542 LTS-005 chr1 47717190 54563522 6846333 * c(MIR761, LOC100507564, MIR4781, CDKN2C, FAF1, KTI12, OSBPL9, LRRC42, TCEANC2, PODN, CPT2, GLIS1, SLC25A3P1, DIO1, ELAVL4, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, RNF11, C1orf185, GPX7, FAM159A, TRABD2B, LDLRAD1, SKINT1L, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, HSPB11, CMPK1, YIPF1, SPATA6, C1orf123, ECHDC2, NDC1, RAB3B, SCP2, DMRTB1, DMRTA2, STIL, SLC1A7, COA7, LRP8, BEND5, ZYG11B, FOXD2-AS1, NA NA NA NA NA NA NA NA NA LTS-005 AGBL4, PRPF38A, BTF3L4, ZFYVE9, TMEM59) 0.396520455643425 124 0.161182744112817 1.0321411435288 5076 0.345605645455159 4 2 2 -6.77550111903908 LTS-005 NA NA NA NA LTS-005 chr1 54563523 54570470 6948 * TCEANC2 0 1 NA 1.00310987106401 39 0.224970857311955 4 4 0 -5.76474052622803 LTS-005 chr1 54570471 55118566 548096 * c(MROH7-TTC4, TCEANC2, CDCP2, SSBP3, ACOT11, FAM151A, MROH7, MRPL37, CYB5RL) 0.193112752050401 9 0.219350239976568 1.05519728022031 467 0.331103836936413 4 3 1 -6.83823504135201 LTS-005 chr1 55118567 55119467 901 * c(MROH7-TTC4, MROH7) 0.431 1 NA 1.05900685713442 21 0.174772028382009 4 4 0 -5.76441160298831 LTS-005 chr1 55119468 57209758 2090291 * c(LOC100507634, MROH7-TTC4, MIR4422, LEXM, DHCR24, C1orf168, TMEM61, USP24, PCSK9, PARS2, MROH7, TTC22, PRKAA2, TTC4, BSND, PLPP3) 0.435217283559266 50 0.101321867414327 1.0508087865489 1553 0.291887336345456 4 2 2 -6.85612081602249 LTS-005 chr1 57209759 57378149 168391 * c(C1orf168, C8A) 0.02 1 NA 1.06809215929953 131 0.303485628905945 4 4 0 -5.76441049239488 LTS-005 chr1 57378150 59096055 1717906 * c(OMA1, DAB1, TACSTD2, C8A, C8B) 0.291659652659774 8 0.193598212432716 1.0565705544846 280 0.450536918678332 4 3 1 -6.73428770629097 LTS-005 chr1 59096056 59096060 5 * character(0) 0.353 1 NA 3.029 1 NA NA NA NA NA LTS-005 chr1 59096061 72241986 13145926 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, MIR4711, ZRANB2-AS2, PATJ, HHLA3, MYSM1, C1orf87, UBE2U, CTH, IL23R, CYP2J2, KANK4, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, NEGR1, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, JUN, LEPR, C1orf141, MIR101-1, MIR186, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, PIN1P1, L1TD1, LEPROT, RAVER2, FGGY, LRRC40, DEPDC1, NA NA NA NA NA NA NA NA NA LTS-005 GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, HSD52, USP1, DLEU2L, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.428779957873362 178 0.104667721106146 1.03310664753679 6660 0.314033024692105 4 2 2 -6.90608627323977 LTS-005 NA NA NA NA LTS-005 chr1 72241987 72400748 158762 * c(NEGR1-IT1, NEGR1) NA 0 NA 1.193 1 NA NA NA NA NA LTS-005 chr1 72400749 76255812 3855064 * c(FPGT-TNNI3K, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.449067456994269 29 0.0928530010444232 1.10278795631493 1226 0.262677352483626 4 2 2 -7.00194205349669 LTS-005 chr1 76255813 76365274 109462 * c(MSH4, RABGGTB) 0 1 NA 1.15135521989198 124 0.390852326389133 4 4 0 -5.76679499100519 LTS-005 chr1 76365275 77098803 733529 * c(ASB17, ST6GALNAC3, MSH4) 0.351860171653378 9 0.207551867680775 1.17410642895702 209 0.70775785106582 5 3 2 -6.75213939241975 LTS-005 chr1 77098804 77530991 432188 * ST6GALNAC5 0.283709488452372 3 0.278298999878428 1.0268642869842 119 0.394736566568369 4 3 1 -6.7357091181509 LTS-005 chr1 77530992 77555481 24490 * PIGK 0.477 1 NA 0.999952719804151 27 0.193824516044651 4 4 0 -5.76613885011276 LTS-005 chr1 77555482 85031630 7476149 * c(PIGK, MIR548AP, IFI44, IFI44L, DNAJB4, SAMD13, CTBS, MGC27382, USP33, ADGRL2, ZZZ3, AK5, GNG5, MIGA1, UOX, GIPC2, PRKACB, PTGFR, DNASE2B, ADGRL4, TTLL7, RPF1, FUBP1, NEXN) 0.459919067119596 40 0.0786176686280687 1.04719640730093 2214 0.341662909869788 4 2 2 -7.19340326688808 LTS-005 chr1 85031631 85035825 4195 * CTBS 0 1 NA 1.158764752963 5 0.65537828770871 4 4 0 -5.76444848696053 LTS-005 chr1 85035826 85391853 356028 * c(SSX2IP, CTBS, LPAR3, MCOLN2, LINC01555) 0.34321563295574 12 0.229739559396102 0.989667783433477 310 0.309770794709969 4 2 2 -6.77056673869393 LTS-005 chr1 85391854 85405238 13385 * MCOLN2 0.469 1 NA 1.01183586942163 31 0.13739800909484 4 4 0 -5.76568164832651 LTS-005 chr1 85405239 86591567 1186329 * c(MIR4423, WDR63, C1orf52, DDAH1, MCOLN2, COL24A1, CYR61, ZNHIT6, MCOLN3, LOC646626, SYDE2, BCL10) 0.45637357988867 32 0.0425733593626267 1.03112727841476 1041 0.433114441109692 4 2 2 -7.93637322675219 LTS-005 chr1 86591568 86591736 169 * COL24A1 0.448 1 NA 1.10162383682027 5 0.764680979232516 4 4 0 -5.76441029333689 LTS-005 chr1 86591737 86838158 246422 * c(COL24A1, ODF2L) 0.319634411903775 9 0.226265576504936 1.0272605874794 120 0.359044272821526 4 3 1 -6.74840224136283 LTS-005 chr1 86838159 86852042 13884 * ODF2L 0.5 1 NA 0.972081265733708 39 0.302168561247208 4 4 0 -5.76522923240095 LTS-005 chr1 86852043 89401939 2549897 * c(LINC01364, CLCA1, CLCA4, GTF2B, LINC01140, SH3GLB1, PKN2, KYAT3, ODF2L, LMO4, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.430416314018841 35 0.113108091382246 1.05941419857497 990 1.65551950941049 4 2 2 -6.80997019304743 LTS-005 chr1 89401940 89408647 6708 * KYAT3 NA 0 NA 0.913 1 NA NA NA NA NA LTS-005 chr1 89408648 94041762 4633115 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.450134595867392 82 0.0821446321446732 0.962689136966387 3399 0.252107263626739 4 2 2 -7.48471968891873 LTS-005 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.344 1 NA NA NA NA NA LTS-005 chr1 94047868 94353573 305706 * c(MIR760, LOC100129046, GCLM, DNTTIP2, BCAR3) 0.474218888706143 11 0.0199011192010536 1.05090083893827 209 0.342965584110755 4 2 2 -11.3184609866668 LTS-005 chr1 94353574 94367097 13524 * GCLM 0.357 1 NA 0.918391632236647 43 0.175270558135929 3 3 0 -5.76652912664186 LTS-005 chr1 94367098 94674726 307629 * c(ABCA4, GCLM, ARHGAP29) 0.337364100532748 10 0.22726159669714 1.06224868294979 463 0.38629851585376 4 3 1 -6.76409459614185 LTS-005 chr1 94674727 94995713 320987 * c(F3, ABCD3, ARHGAP29) 0.489 1 NA 1.10308943138167 157 0.310792745236418 4 4 0 -5.7664092565251 LTS-005 chr1 94995714 98348885 3353172 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, RWDD3, FLJ31662, PTBP2, LOC729970) 0.46091506386925 26 0.0339869658274146 1.04532549461604 710 0.261724852273418 4 2 2 -8.63962300581059 LTS-005 chr1 98348886 98349274 389 * DPYD 0 1 NA 1.02498716853988 5 0.477342853722563 4 4 0 -5.76441191681306 LTS-005 chr1 98349275 99773447 1424173 * c(LOC100129620, MIR2682, PLPPR5, DPYD, MIR137HG, MIR137, SNX7, LOC729987, PLPPR4) 0.306631483534372 9 0.225383993319056 1.0276537072817 267 0.361933439178448 4 3 1 -6.74826126406199 LTS-005 chr1 99773448 100194126 420679 * c(FRRS1, PALMD, PLPPR4) 0.476 1 NA 0.962846720575066 145 0.202763303346311 4 4 0 -5.83047212406044 LTS-005 chr1 100194127 110743835 10549709 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, AHCYL1, HENMT1, OLFM3, ATXN7L2, C1orf194, LRRC39, COL11A1, CSF1, NBPF4, SLC30A7, DBT, FNDC7, SASS6, UBL4B, AGL, S1PR1, CELSR2, EXTL2, NTNG1, WDR47, CLCC1, SLC35A3, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, MYBPHL, SLC6A17, FRRS1, MIR197, DPH5, GPR88, TRMT13, PRPF38B, PRMT6, NA NA NA NA NA NA NA NA NA LTS-005 RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, MFSD14A, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, VCAM1, EPS8L3, GPR61, PSRC1, STRIP1, CDC14A, RTCA, DNAJA1P5) 0.432521105352303 127 0.103552013488695 1.02927534186235 6024 0.367555307192435 4 2 2 -6.89957239373557 LTS-005 NA NA NA NA LTS-005 chr1 110743836 110744291 456 * SLC6A17 0 1 NA 1.27347771100992 11 0.802029845284621 5 5 0 -5.7644102854461 LTS-005 chr1 110744292 111740658 996367 * c(LAMTOR5-AS1, CEPT1, LAMTOR5, DRAM2, KCNA2, KCNA3, KCNA10, KCNC4, SLC6A17, LOC440600, LRIF1, CYMP, RBM15, DENND2D, PROK1, SLC16A4, CD53) 0.292505785961989 12 0.234436397008707 1.01072317504146 805 0.448661595727347 4 3 1 -6.74278268863345 LTS-005 chr1 111740659 111740671 13 * DENND2D 0.447 1 NA 1.864 1 NA NA NA NA NA LTS-005 chr1 111740672 120484421 8743750 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, BCAS2, WARS2, AP4B1, PHTF1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, MAB21L3, HSD3BP4, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, SPAG17, HIPK1, AKR7A2P1, MAGI3, PTPN22, PHGDH, AMPD1, CHIA, FAM19A3, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, NBPF7, KCND3, RHOC, MOV10, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, NA NA NA NA NA NA NA NA NA LTS-005 ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, SLC22A15, CTTNBP2NL, FAM212B, OLFML3, PTGFRN, RAP1A, LOC643355, LOC643441, LINC00622, DCLRE1B, SLC16A1, SYCP1, TBX15, TSHB, WNT2B, CSDE1, WDR77, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58, LRIG2) 0.42993815602019 203 0.103116821216201 1.00660819360571 7701 0.336804255587536 4 2 2 -6.98448723773181 LTS-005 NA NA NA NA LTS-005 chr1 120484422 120529742 45321 * NOTCH2 NA 0 NA 1.04938845350114 81 0.197681633153967 4 NA NA -5.76464156686274 LTS-005 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.777 1 NA NA NA NA NA LTS-005 chr1 120534071 120539331 5261 * NOTCH2 0.291 1 NA 0.919053504943052 95 1.70553867646902 3 3 0 -5.76441898268201 LTS-005 chr1 120539332 121310061 770730 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.309499587132299 11 0.0687320224428971 0.852157864270403 128 0.245759452341826 3 2 1 -6.95474536093912 LTS-005 chr1 121310062 121313547 3486 * EMBP1 NA 0 NA 0.955707313315201 23 0.2869133402652 4 NA NA -5.76472732087445 LTS-005 chr1 143912360 144013865 101506 * FAM72D 0.361 1 NA 0.177462391772276 13 0.337869095421623 0 0 0 -5.77646493346402 LTS-005 chr1 144013866 144677062 663197 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) NA 0 NA 0.588025252036286 27 0.184980926097647 2 NA NA -5.78099300318601 LTS-005 chr1 144677063 144679884 2822 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.82 1 NA NA NA NA NA LTS-005 chr1 144679885 144951973 272089 * c(NBPF20, LOC653513, PDE4DIP) 0.420452793650837 43 0.100154122648543 0.972970423222258 390 0.330455091508347 4 2 2 -6.8023444940058 LTS-005 chr1 144951974 144952078 105 * c(NBPF20, LOC653513, PDE4DIP) 0.305 1 NA 1.25627054807488 3 1.02652926569744 5 5 0 -5.76441019702055 LTS-005 chr1 144952079 145136562 184484 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.319998118542436 24 0.0899424836343696 0.927901298826775 150 0.353754961388438 3 2 1 -6.81638760460438 LTS-005 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.57 1 NA NA NA NA NA LTS-005 chr1 145136925 145138360 1436 * NBPF20 NA 0 NA 0.641887148915355 40 0.27203514926549 2 NA NA -5.76443902125532 LTS-005 chr1 145138361 145282904 144544 * c(NBPF10, NBPF20, NOTCH2NL) 0.298812410327996 4 0.0969501590165449 0.87590437039538 78 0.146052258014938 4 3 1 -6.9009711477343 LTS-005 chr1 145282905 145283699 795 * c(NBPF10, NBPF20, NOTCH2NL) 0.398 1 NA 0.871766211542942 21 0.297127157323338 3 3 0 -5.76441771613638 LTS-005 chr1 145283700 147806762 2523063 * c(NBPF10, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, GJA5, GJA8, RNF115, ANKRD34A, NOTCH2NL, ACP6, GPR89B, PDZK1, PRKAB2, BCL9, NBPF13P, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.430380634638042 57 0.077336066410956 1.00572561704689 2066 0.407992572122467 4 2 2 -6.92826841635273 LTS-005 chr1 147806763 148195957 389195 * c(NBPF14, LINC01138) NA 0 NA 0.41204443550256 51 0.113062464082089 1 NA NA -5.86959131618649 LTS-005 chr1 148902222 150547747 1645526 * c(FCGR1CP, MIR4257, FALEC, SF3B4, MTMR11, VPS45, CIART, ECM1, FCGR1A, RPRD2, CA14, HIST2H2AB, HIST2H2BC, LOC388692, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, MRPS21, ADAMTSL4, OTUD7B, LINC00869, LOC645166, HIST2H3D, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PRPF3, SV2A) 0.430840357859979 40 0.108333385601565 1.01471674708853 1755 0.886836924885592 4 2 2 -6.82185759985947 LTS-005 chr1 150547748 150594020 46273 * MCL1 0 1 NA 0.990261299575522 75 0.21836473166708 4 4 0 -5.76779178747886 LTS-005 chr1 150594021 150705290 111270 * c(CTSS, ENSA, GOLPH3L, HORMAD1) 0.349597897630598 9 0.231298028045588 0.980528278373182 323 0.254350403508226 3 2 1 -6.75779680756292 LTS-005 chr1 150705291 150737220 31930 * CTSS 0.429 1 NA 0.971327054445853 35 0.198982461961016 4 4 0 -5.76882311526154 LTS-005 chr1 150737221 151105824 368604 * c(SEMA6C, MLLT11, GABPB2, BNIPL, CTSK, CTSS, CERS2, ARNT, C1orf56, FAM63A, CDC42SE1, PRUNE1, ANXA9, SETDB1) 0.441277399151683 26 0.0955234002744877 0.976222005033714 1075 0.268985604901434 4 2 2 -6.92821936551317 LTS-005 chr1 151105825 151132375 26551 * c(TNFAIP8L2-SCNM1, SEMA6C, LYSMD1, TNFAIP8L2) 0.473 1 NA 1.06573188112954 111 0.286611708443447 4 4 0 -5.76441163694681 LTS-005 chr1 151132376 151675760 543385 * c(TNFAIP8L2-SCNM1, CELF3, POGZ, TMOD4, LYSMD1, PI4KB, PSMB4, PSMD4, CGN, ZNF687, RFX5, MIR554, VPS72, TUFT1, SCNM1, SNX27, PIP5K1A, SELENBP1) 0.227126309058552 9 0.250171441215819 1.01208625775623 1335 0.313277771305728 4 3 1 -6.77540925762639 LTS-005 chr1 151675761 151686983 11223 * c(CELF3, RIIAD1) 0.49 1 NA 1.0466595885608 67 0.236847282988571 4 4 0 -5.76446227004429 LTS-005 chr1 151686984 152760544 1073561 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, RORC, S100A10, S100A11, MRPL9, TCHH, LCE3D) 0.421569853147765 62 0.119381458256117 1.05744779386769 1538 0.362330414513166 4 2 2 -6.77613601784354 LTS-005 chr1 152760545 152777362 16818 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.0429653684992 40 1.08372639151525 8 NA NA -5.76441731917814 LTS-005 chr1 152777363 153012240 234878 * c(SPRR4, LCE1A, LCE1B, LCE1C, IVL, SMCP, LCE6A, SPRR1A, SPRR1B, SPRR2D, SPRR3) 0.444367399890765 14 0.0274751636097879 1.05134438400491 190 0.347915437868955 4 2 2 -8.48477690465432 LTS-005 chr1 153012241 153066262 54022 * c(SPRR2A, SPRR2B, SPRR2D, SPRR2E) 0.369 1 NA 0.981623760769282 37 0.0961792152257516 4 4 0 -5.78961501814893 LTS-005 chr1 153066263 153634757 568495 * c(PGLYRP3, S100A16, LELP1, SNAPIN, CHTOP, S100A7A, ILF2, LOR, PGLYRP4, S100A14, PRR9, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, SPRR2A, SPRR2C, SPRR2E, SPRR2F, SPRR2G) 0.311181684391863 9 0.227013215474342 1.03661599173281 666 0.314535720621068 4 3 1 -6.74386705748373 LTS-005 chr1 153634758 153723493 88736 * c(ILF2, NPR1, INTS3) 0.471 1 NA 1.00847698948884 269 0.215308660178256 4 4 0 -5.76827164435969 LTS-005 chr1 153723494 155289545 1566052 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, C1orf43, GBA, GBAP1, SLC39A1, IL6R, KCNN3, C1orf189, MTX1, MUC1, ZBTB7B, PKLR, DPM3, UBE2Q1, LENEP, SLC50A1, ATP8B2, PBXIP1, GATAD2B, HCN3, RAB13, RPS27, SHC1, INTS3, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, NA NA NA NA NA NA NA NA NA LTS-005 PYGO2, NUP210L, UBAP2L, DENND4B) 0.44338452256951 101 0.0948834021312474 1.02887738954148 4601 0.269504460721296 4 2 2 -6.93805549499224 LTS-005 NA NA NA NA LTS-005 chr1 155289546 155300253 10708 * c(FDPS, RUSC1, RUSC1-AS1) 0 1 NA 1.06245993904504 127 0.35396947954724 4 4 0 -5.76441189424809 LTS-005 chr1 155300254 155868625 568372 * c(MSTO2P, SYT11, RUSC1, GON4L, MSTO1, YY1AP1, ASH1L, RIT1, ASH1L-AS1, POU5F1P4, MIR555, DAP3) 0.240381926740649 9 0.226268645640531 0.987509133638197 1024 0.315682119925451 4 3 1 -6.77814032822807 LTS-005 chr1 155868626 155871955 3330 * RIT1 0.452 1 NA 0.944505720442564 41 0.180617862336819 3 3 0 -5.76525710842348 LTS-005 chr1 155871956 156907115 1035160 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, KIAA0907, SMG5, LAMTOR2, HDGF, RXFP4, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, NTRK1, RRNAD1, GPATCH4, PRCC, UBQLN4, RAB25, RHBG, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, SSR2, SCARNA4, SNORA80E, CCT3, MIR765, MRPL24, PAQR6, ISG20L2, TMEM79, SH2D2A, ARHGEF2, MEX3A, SLC25A44, ARHGEF11) 0.437758835048347 80 0.0940455375491649 1.03682300490934 3176 0.2780023698169 4 2 2 -6.89334948782517 LTS-005 chr1 156907116 156925558 18443 * ARHGEF11 0 1 NA 1.01280188853095 99 0.28740843002306 4 4 0 -5.76479674763508 LTS-005 chr1 156925559 158224971 1299413 * c(FCRL1, FCRL3, ETV3, CYCSP52, ETV3L, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1D, CD5L, ARHGEF11) 0.281098558331386 23 0.219584885042506 1.07959748515783 1241 0.483770399698444 4 3 1 -6.73361975846377 LTS-005 chr1 158224972 158225083 112 * CD1A 0.46 1 NA 1.49523378817246 3 0.641892774015515 6 6 0 -5.76441020483564 LTS-005 chr1 158225084 158607935 382852 * c(OR10T2, OR6P1, OR10X1, OR10Z1, OR10R2, OR10K2, OR10K1, OR6Y1, SPTA1, CD1A, CD1B, CD1C, CD1E) 0.426897471042447 35 0.132355911824739 1.09121077683632 514 0.510337563182262 4 2 2 -6.78052614759351 LTS-005 chr1 158607936 158609440 1505 * SPTA1 0 1 NA 1.2240353711812 7 0.688841263074655 5 5 0 -5.76441663146041 LTS-005 chr1 158609441 158646012 36572 * SPTA1 0.203874782678781 10 0.241851193918905 1.06954481048361 158 0.667040370805823 6 5 1 -6.73931211084666 LTS-005 chr1 158646013 158656257 10245 * SPTA1 0.476 1 NA 1.05860270159334 37 0.24023446692575 4 4 0 -5.76441973669891 LTS-005 chr1 158656258 159923111 1266854 * c(CADM3-AS1, OR10J5, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, FCRL6, OR6K3, VSIG8, MNDA, OR10J3, DUSP23, SLAMF8, IGSF9, CADM3, SPTA1, OR6N2, OR6K2, TAGLN2, SLAMF9, AIM2) 0.447616248754775 60 0.0694607050642491 1.05717187776064 1285 0.373653668090475 4 2 2 -7.12470815977698 LTS-005 chr1 159923112 160008926 85815 * c(LINC01133, KCNJ10, SLAMF9, PIGM) 0 1 NA 1.02333722149917 137 0.395802958647168 4 4 0 -5.76502844442151 LTS-005 chr1 160008927 160093561 84635 * c(KCNJ9, KCNJ10, ATP1A2, IGSF8) 0.214906114660587 10 0.2344224344592 1.06734078259926 264 1.4803821589915 6 5 1 -6.73786277572606 LTS-005 chr1 160093562 160106531 12970 * ATP1A2 0.486 1 NA 1.04982770396407 85 0.245473237001579 4 4 0 -5.76445113759991 LTS-005 chr1 160106532 161093628 987097 * c(TSTD1, SLAMF6, KLHDC9, COPA, ITLN2, NCSTN, ARHGAP30, LY9, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, CD244, PFDN2, ITLN1, VANGL2, SLAMF7, PEX19, SLAMF1, USF1, NECTIN4, CASQ1, PEA15, CD84, DEDD, CD48) 0.392611806655693 73 0.158544653500927 1.02403917086203 2354 0.369499873253002 4 2 2 -6.74113260576781 LTS-005 chr1 161093629 161163037 69409 * c(USP21, NIT1, UFC1, PPOX, B4GALT3, DEDD, ADAMTS4) 0.479 1 NA 1.02913980308687 299 0.239083755849408 4 4 0 -5.7654466367156 LTS-005 chr1 161163038 171766090 10603053 * c(MIR921, MIR1295A, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR1295B, MIR5187, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, CFAP126, MPC2, OLFML2B, TIPRL, C1orf111, LINC01142, NME7, HSPA6, HSPA7, APOA2, CCDC190, SFT2D2, ILDR2, FMO6P, NA NA NA NA NA NA NA NA NA LTS-005 C1orf226, LOC400794, LMX1A, MGST3, MPZ, LRRC52, LOC440700, MYOC, NDUFS2, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SDHC, SELE, SELL, SELP, RPL31P11, PCP4L1, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, TOMM40L, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 DUSP27, RCSD1, METTL18, GORAB, ADAMTS4, NOS1AP, NR1I3) 0.439588015895364 234 0.108263202533023 1.02273759910304 7602 0.309966713096505 4 2 2 -6.98330064925488 LTS-005 NA NA NA NA LTS-005 chr1 171766091 171766156 66 * METTL13 0 1 NA 4.481 1 NA NA NA NA NA LTS-005 chr1 171766157 172280428 514272 * c(MIR3120, DNM3OS, DNM3, METTL13) 0.472353563666954 3 0.0202566861389846 1.05652599361931 174 0.396038171107979 4 2 2 -11.1319154385063 LTS-005 chr1 172280429 172292412 11984 * DNM3 NA 0 NA 0.805 1 NA NA NA NA NA LTS-005 chr1 172292413 173152967 860555 * c(DNM3, FASLG, SUCO, PIGC, TNFSF4, TNFSF18, C1orf105) 0.275507103213317 9 0.233551386208689 0.96956457024194 557 0.33118805848264 4 3 1 -6.77842700862758 LTS-005 chr1 173152968 173153186 219 * TNFSF4 0.435 1 NA 0.865609190242679 5 0.0770357060070198 3 3 0 -5.76443049720556 LTS-005 chr1 173153187 175097871 1944685 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, SERPINC1, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, CENPL, GPR52, PRDX6, RABGAP1L) 0.465376546323717 22 0.0249050578148677 0.984590688958221 1544 0.252745768410918 4 2 2 -9.99363259007031 LTS-005 chr1 175097872 175104871 7000 * TNN NA 0 NA 1.207 1 NA NA NA NA NA LTS-005 chr1 175104872 176812656 1707785 * c(PAPPA2, TNN, RFWD2, SCARNA3, TNR, KIAA0040) 0.44533102399817 19 0.113144734716875 1.10314614877282 552 1.86057599301219 4 2 2 -6.87516447928759 LTS-005 chr1 176812657 176813430 774 * character(0) 0.446 1 NA 0.947663663917229 17 0.10045762934749 4 4 0 -5.76507407796584 LTS-005 chr1 176813431 177250878 437448 * c(ASTN1, MIR488, BRINP2) 0.217942574460557 9 0.25304023615052 1.13481921640572 323 0.477926686710549 5 4 1 -6.75696238680375 LTS-005 chr1 177250879 177901741 650863 * c(BRINP2, SEC16B) 0.478 1 NA 1.08972571783122 41 0.308878393862572 4 4 0 -5.76596313684642 LTS-005 chr1 177901742 178822117 920376 * c(RASAL2-AS1, MIR4424, C1orf220, RALGPS2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.425219875105411 14 0.124787313563413 1.13127563168272 609 0.362204055689366 4 2 2 -6.79495078928483 LTS-005 chr1 178822118 178822734 617 * c(RALGPS2, ANGPTL1) NA 0 NA 0.953 1 NA NA NA NA NA LTS-005 chr1 178822735 192781393 13958659 * c(GM140, GS1-279B7.1, MIR548F1, MIR3121, LHX4-AS1, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, BRINP3, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, IER5, PDC, PLA2G4A, SWT1, C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS1, RGS2, NA NA NA NA NA NA NA NA NA LTS-005 RGS13, RGS16, RNASEL, RNF2, TOR3A, RGS18, SOAT1, TPR, CACNA1E, NPHS2, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, LHX4, ANGPTL1, XPR1, CEP350, SMG7, FAM20B) 0.439352816561791 227 0.105763525824357 1.02625139795114 8252 0.306030127575936 4 2 2 -7.00606113033031 LTS-005 NA NA NA NA LTS-005 chr1 192781394 192984873 203480 * c(UCHL5, RGS2) NA 0 NA 0.529 1 NA NA NA NA NA LTS-005 chr1 192984874 193029334 44461 * c(UCHL5, TROVE2) NA 0 NA 0.582175412956353 85 0.102088942108538 2 NA NA -5.77025572412306 LTS-005 chr1 193029335 193038126 8792 * TROVE2 NA 0 NA 0.829 1 NA NA NA NA NA LTS-005 chr1 193038127 196882741 3844615 * c(MIR1278, MIR4735, CFHR4, CFHR3, CFH, CFHR1, KCNT2, GLRX2, TROVE2, CDC73, B3GALT2) 0.442794586506142 23 0.0363961514709623 1.02892370705966 808 0.340575415097886 4 2 2 -7.82657681575304 LTS-005 chr1 196882742 196884258 1517 * CFHR4 0.328 1 NA 1.16887478709885 21 1.28921252265537 4 4 0 -5.76441452787058 LTS-005 chr1 196884259 197065158 180900 * c(CFHR4, F13B, ASPM, CFHR2, CFHR5) 0.330601579269889 9 0.23367968342251 1.05091854779599 223 0.311816971213148 4 3 1 -6.75555618979355 LTS-005 chr1 197065159 197070815 5657 * ASPM 0.48 1 NA 0.995264852558193 29 0.215949410240573 4 4 0 -5.7647789305783 LTS-005 chr1 197070816 200827906 3757091 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, DDX59, KIF14) 0.422035430543884 39 0.125550657550393 0.989023952222836 2017 0.315447013129537 4 2 2 -6.90566784628022 LTS-005 chr1 200827907 200842633 14727 * c(CAMSAP2, GPR25) 0.455784077432054 2 0.0197989898732233 1.07756966058058 54 0.188746917913017 4 2 2 -10.2510686127207 LTS-005 chr1 200842634 200842753 120 * GPR25 0 1 NA 2.75053670506565 3 3.64466514236905 11 11 0 -5.76441013919068 LTS-005 chr1 200842754 200974641 131888 * c(KIF21B, GPR25, C1orf106) 0.231661350712207 9 0.222155601124777 1.11842601579392 350 0.629818721809207 5 4 1 -6.73775756368308 LTS-005 chr1 200974642 200992575 17934 * KIF21B 0.49 1 NA 1.23936646464095 19 0.229591233506256 5 5 0 -5.76484204412728 LTS-005 chr1 200992576 201355761 363186 * c(KIF21B, TMEM9, LAD1, PKP1, ASCL5, TNNT2, CACNA1S, IGFN1) 0.434230515295759 23 0.101632951925033 1.09956328173112 755 0.395175985067451 4 2 2 -6.84737464062543 LTS-005 chr1 201355762 201355856 95 * LAD1 0 1 NA 1.94739322050052 3 3.03680144230735 8 8 0 -5.76441013685752 LTS-005 chr1 201355857 201793212 437356 * c(MIR1231, MIR5191, CSRP1, PHLDA3, RPS10P7, LAD1, TNNI1, NAV1) 0.317119017958335 10 0.226866309138713 1.06684917230228 458 0.367908147738442 4 3 1 -6.74462622960654 LTS-005 chr1 201793213 201835906 42694 * c(IPO9, NAV1) 0.483 1 NA 1.08000966638141 135 0.270234312267725 4 4 0 -5.7644489907711 LTS-005 chr1 201835907 202553546 717640 * c(TIMM17A, ARL8A, PTPRVP, SHISA4, ELF3, LMOD1, UBE2T, PPP1R12B, IPO9, PTPN7, LGR6, RNPEP, GPR37L1) 0.457948624199793 28 0.0490348515513881 1.06800785247594 1239 0.262577911165584 4 2 2 -7.71633205558997 LTS-005 chr1 202553547 204418482 1864936 * c(ZBED6, PCAT6, KDM5B, CHI3L1, CHIT1, SYT2, LINC00628, GOLT1A, ADORA1, LOC148709, PLEKHA6, FMOD, OPTC, LINC00303, KISS1, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PIK3C2B, LAX1, ETNK2, PRELP, RABIF, KLHL12, REN, MGAT4EP, SNRPE, SNORA77, LINC01136, BTG2, LINC00260, PPP1R15B, PPFIA4, TMEM183A, SOX13, ZC3H11A) 0.442943414191688 93 0.0788618637136296 1.02458733401571 2993 0.360014556032589 4 2 2 -7.01041971520439 LTS-005 chr1 204418483 204521977 103495 * c(MDM4, PIK3C2B) 0 1 NA 1.05325750283152 221 0.255224382369359 4 4 0 -5.76461214441824 LTS-005 chr1 204521978 204943285 421308 * c(LRRN2, NFASC, MDM4) 0.134075273729451 9 0.228966761294686 1.07916560411328 283 0.779206942997518 4 4 0 -6.77537677579765 LTS-005 chr1 204943286 204943992 707 * NFASC 0.432 1 NA 1.10492629352944 11 0.27512800326724 4 4 0 -5.7644163526203 LTS-005 chr1 204943993 205044926 100934 * c(NFASC, CNTN2) 0.397131572038091 11 0.141248909891208 1.10389399937576 417 0.481233979243034 4 2 2 -6.73498127073354 LTS-005 chr1 205044927 205045129 203 * CNTN2 0 1 NA 1.64438353737471 5 1.97820416034342 7 7 0 -5.76441026759301 LTS-005 chr1 205045130 205632677 587548 * c(MFSD4A, ELK4, DSTYK, LEMD1-AS1, LOC284578, TMEM81, MIR135B, CDK18, KLHDC8A, RBBP5, CNTN2, NUAK2, SLC45A3, LEMD1, TMCC2) 0.310397328529679 18 0.221142547113374 1.03853864678732 1134 0.364881630777796 4 3 1 -6.74276044136958 LTS-005 chr1 205632678 205683623 50946 * c(ELK4, NUCKS1, SLC45A3) 0.422 1 NA 0.9232444962737 55 0.262168216489669 3 3 0 -5.76840894472827 LTS-005 chr1 205683624 207520376 1836753 * c(IL24, SLC26A9, PM20D1, CTSE, CD55, EIF2D, SRGAP2, SLC41A1, LOC284581, IL19, IL10, C1orf186, IL20, PFKFB2, PIGR, AVPR1B, YOD1, NUCKS1, SRGAP2C, C4BPA, C4BPB, FAM72A, C1orf116, RASSF5, FCAMR, DYRK3, RAB29, FCMR, MAPKAPK2, IKBKE) 0.420955473576415 60 0.132949763249216 1.02217079274445 2470 0.30983239643574 4 2 2 -6.78875145188191 LTS-005 chr1 207520377 207534338 13962 * CD55 NA 0 NA 1.11085744681913 45 0.196301702962197 4 NA NA -5.76473546776848 LTS-005 chr1 207534339 207627458 93120 * character(0) NA 0 NA 0.696 1 NA NA NA NA NA LTS-005 chr1 207627459 207818719 191261 * c(CR1, CR1L, CR2) 0.209 1 NA 0.599544384163085 257 0.154308433717797 2 2 0 -5.76604394487257 LTS-005 chr1 207818720 211746226 3927507 * c(MIR4260, CR1L, C1orf74, LOC148696, SYT14, DIEXF, HSD11B1, RD3, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, G0S2, PLXNA2, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, MIR205HG, TRAF5, TRAF3IP3, LINC00467, CD34) 0.136282819052488 55 0.0602947306607679 0.619517948891671 2019 0.196707730527467 2 2 0 -6.76032735884054 LTS-005 chr1 211746227 213168190 1421964 * c(MIR3122, TATDN3, SPATA45, FAM71A, INTS7, NSL1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.138105909147519 34 0.0489489165859431 0.573531795497579 1406 0.197174692955069 2 2 0 -6.85005411569255 LTS-005 chr1 213168191 213189148 20958 * ANGEL2 NA 0 NA 0.632463416284557 55 0.128056232387177 2 NA NA -5.76535133953386 LTS-005 chr1 213189149 213224478 35330 * ANGEL2 NA 0 NA 1.245 1 NA NA NA NA NA LTS-005 chr1 213224479 213224512 34 * character(0) 0.433 1 NA 0.411 1 NA NA NA NA NA LTS-005 chr1 213224513 221875130 8650618 * c(LINC00538, LINC00210, BPNT1, CENPF, DUSP10, LYPLAL1, SPATA17, EPRS, ESRRG, RAB3GAP2, RPS6KC1, RNU5F-1, HLX, KCNK2, C1orf140, MIR194-1, MIR215, MARK1, RRP15, KCTD3, MARC2, GPATCH2, SLC30A10, IARS2, PROX1, SMYD2, PTPN14, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, USH2A, C1orf115) 0.428592701836621 108 0.110218808698566 1.08946087025107 3418 0.341357428558734 4 2 2 -6.82340346286123 LTS-005 chr1 221875131 224872473 2997343 * c(MIR320B2, MIR4742, DUSP10, BROX, CNIH3, CCDC185, FBXO28, CNIH4, MIA3, CAPN8, FAM177B, NVL, SUSD4, AIDA, TLR5, TP53BP2, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.444392965565549 66 0.105833683350191 1.01456906384909 2086 0.300753928670481 4 2 2 -6.94258900004907 LTS-005 chr1 224872474 225305529 433056 * c(DNAH14, CNIH3) 0.394 1 NA 1.10579457376917 197 0.330206018350757 4 4 0 -5.7671829276111 LTS-005 chr1 225305530 225541908 236379 * DNAH14 0.232091906222127 9 0.241165975580673 1.03656620571241 263 0.546490046568253 5 4 1 -6.75713793162629 LTS-005 chr1 225541909 226016381 474473 * c(DNAH14, EPHX1, LBR, ENAH, SRP9) 0.454 1 NA 1.02435342685766 425 0.254890837159605 4 4 0 -5.77227113250082 LTS-005 chr1 226016382 228404864 2388483 * c(NA, MIR3620, MIR5008, LEFTY1, SNAP47, MRPL55, PARP1, SDE2, IBA57, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, ZNF847P, H3F3AP4, PSEN2, COQ8A, GJC2, C1orf145, ACBD3, JMJD4, LEFTY2, WNT9A, C1orf35, MIXL1, OBSCN, CDC42BPA, WNT3A, TMEM63A) 0.453346388597862 116 0.0561059022195354 1.05114253096012 2618 0.298518827610145 4 2 2 -7.42522748013608 LTS-005 chr1 228404865 228431157 26293 * OBSCN 0 1 NA 1.17769042114452 13 0.799899665182437 5 5 0 -5.76464232335963 LTS-005 chr1 228431158 228566113 134956 * OBSCN 0.382525434165661 14 0.20123901922128 1.09754529177449 745 0.292166769880467 4 2 2 -6.7344570680729 LTS-005 chr1 228566114 228871275 305162 * c(MIR4666A, HIST3H2BB, RNF187, TRIM17, DUSP5P1, RHOU, TRIM11, HIST3H3, OBSCN, HIST3H2A) 0.441 1 NA 1.05128751513234 292 0.219925521900835 4 4 0 -5.76543178616406 LTS-005 chr1 228871276 232944926 4073651 * c(LINC00582, MIR1182, TSNAX-DISC1, SPHAR, CAPN9, CCSAP, C1orf131, EXOC8, LOC149373, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, TRIM67, EGLN1, MAP10, NUP133, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, SPRTN, GNPAT, C1orf198, URB2) 0.430307324520657 98 0.124331838478046 1.05560485261607 3036 0.326704065783728 4 2 2 -6.79995351607579 LTS-005 chr1 232944927 233193270 248344 * c(MAP10, PCNX2, NTPCR) 0.466 1 NA 1.09389658322793 197 0.229729008467367 4 4 0 -5.76594267622576 LTS-005 chr1 233193271 233767093 573823 * c(MIR4427, KCNK1, PCNX2, MLK4) 0.236604517646382 9 0.242885489708857 1.06528491748058 401 0.466521505947177 4 3 1 -6.75731959289405 LTS-005 chr1 233767094 233785641 18548 * KCNK1 0.491 1 NA 1.05874745839775 5 0.161820888639261 4 4 0 -5.76444735398709 LTS-005 chr1 233785642 234456023 670382 * c(MIR4671, SLC35F3, KCNK1) 0.441785393482341 3 0.0177763888346312 1.06259266746264 92 0.183947233756036 4 2 2 -9.73472819985391 LTS-005 chr1 234456024 234458756 2733 * SLC35F3 NA 0 NA 0.716 1 NA NA NA NA NA LTS-005 chr1 234458757 236381266 1922510 * c(MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, NID1, ARID4B, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, GGPS1, TOMM20) 0.439073260335472 45 0.102582915465756 0.970883490736942 1601 0.249898076884194 4 2 2 -7.03465156490479 LTS-005 chr1 236381267 237066853 685587 * c(LGALS8-AS1, EDARADD, LGALS8, MTR, HEATR1, ERO1B, ACTN2) 0.43562474080403 64 0.0961442149556823 1.0629620729868 1058 0.382806038424083 4 2 2 -6.86718970485181 LTS-005 chr1 237066854 237067032 179 * MTR 0 1 NA 1.66939727266215 5 2.87681719961488 7 7 0 -5.76441016745654 LTS-005 chr1 237067033 240071308 3004276 * c(LOC100130331, CHRM3, LINC01139, MTR, ZP4, RYR2, MT1HL1) 0.320037513019443 11 0.214934154822101 1.10721190181492 719 0.414559257937801 4 3 1 -6.76154694033762 LTS-005 chr1 240071309 240074468 3160 * CHRM3 0.481 1 NA 1.094115025856 67 0.250162526094101 4 4 0 -5.76442686166045 LTS-005 chr1 240074469 243287906 3213438 * c(MIR3123, CHML, WDR64, PLD5, FH, OPN3, MAP1LC3C, FMN2, RGS7, GREM2, RPS7P5, LINC01347, KMO, EXO1, CEP170) 0.447371076864245 28 0.0430317189521734 1.08769382402169 1139 0.345846499374765 4 2 2 -7.65979628145512 LTS-005 chr1 243287907 243299455 11549 * CEP170 0 1 NA 1.00382126061462 55 0.271314200303256 4 4 0 -5.76477933884503 LTS-005 chr1 243299456 243727157 427702 * c(AKT3, MIR4677, SDCCAG8, CEP170) 0.461820354932993 2 0.0240416305603426 1.02712334874713 343 0.207084953448729 4 2 2 -9.83303971938077 LTS-005 chr1 243727158 243736212 9055 * AKT3 NA 0 NA 1.391 1 NA NA NA NA NA LTS-005 chr1 243736213 245165632 1429420 * c(AKT3, ZBTB18, COX20, ADSS, C1orf100, C1orf101, NA, HNRNPU, LOC339529, DESI2, EFCAB2) 0.313706326470906 7 0.136604050696407 1.47744448733988 749 0.56647634987726 6 4 2 -6.76107809462021 LTS-005 chr1 245165633 245530082 364450 * c(KIF26B, EFCAB2) 0.152646391784314 8 0.219384813577812 1.22545106517587 158 0.977547759543328 7 6 1 -6.76914642852928 LTS-005 chr1 245530083 245530282 200 * KIF26B 0.468 1 NA 1.48835874336551 5 1.10465071402684 6 6 0 -5.76441019800852 LTS-005 chr1 245530283 247061670 1531388 * c(LINC01341, CNST, LOC255654, AHCTF1, SCCPDH, KIF26B, TFB2M, SMYD3) 0.420368959476097 23 0.135471202254635 1.09597578013313 790 0.380288487904676 4 2 2 -6.76772965502287 LTS-005 chr1 247061671 247062641 971 * AHCTF1 NA 0 NA 0.879 1 NA NA NA NA NA LTS-005 chr1 247062642 247287153 224512 * c(ZNF670-ZNF695, AHCTF1, C1orf229, ZNF695, ZNF124, ZNF669, ZNF670) 0.405399832573418 12 0.134538943331391 0.955047080069013 297 0.32566898922148 4 2 2 -6.75724224361396 LTS-005 chr1 247287154 247287165 12 * ZNF124 NA 0 NA 1.32 1 NA NA NA NA NA LTS-005 chr1 247287166 248637675 1350510 * c(MIR3916, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2T2, OR2W5, OR13G1, ZNF124, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496) 0.396895079439591 83 0.100434031635445 1.18615001359129 1309 0.84932439865547 4 2 2 -6.74832694887714 LTS-005 chr1 248637676 248637679 4 * character(0) NA 0 NA 0.784 1 NA NA NA NA NA LTS-005 chr1 248637680 248685583 47904 * c(OR2G6, OR2T5) 0.466 1 NA 0.539727766531847 39 0.472595066802429 2 2 0 -5.76637288956754 LTS-005 chr1 248685584 249208772 523189 * c(MIR3124, OR2T34, OR2T10, OR2T11, PGBD2, OR2T29, OR2G6, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.444721068586218 30 0.0695253282219352 1.07912000784251 428 1.1083443872562 4 2 2 -7.0875389669811 LTS-005 chr1 249208773 249214134 5362 * PGBD2 NA 0 NA 0.91798607274936 63 0.172207743474103 3 NA NA -5.76527194670053 LTS-005 chr2 38824 39400 577 * FAM110C 0 1 NA 0.642153916082777 11 0.0891170833536115 2 2 0 -5.76451998524292 LTS-005 chr2 39401 23865260 23825860 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, E2F6, CYS1, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, NA NA NA NA NA NA NA NA NA LTS-005 GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, RHOB, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, TRAPPC12, NBAS, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, FAM110C, HS1BP3, LOC645949, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, MYT1L-AS1, VSNL1, PXDN, COLEC11, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, RNF144A NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ) 0.122111926586238 208 0.0564765771964983 0.614123271645575 8338 0.208671175879988 2 2 0 -6.74749908379175 LTS-005 NA NA NA NA LTS-005 chr2 23865261 23866040 780 * KLHL29 NA 0 NA 0.664748297519361 15 0.0557569555772022 2 NA NA -5.76549168954979 LTS-005 chr2 23866041 23907250 41210 * KLHL29 NA 0 NA 1.178 1 NA NA NA NA NA LTS-005 chr2 23907251 23918495 11245 * KLHL29 0.483 1 NA 1.02787516808155 15 0.173017835579374 4 4 0 -5.76475204409728 LTS-005 chr2 23918496 26951780 3033285 * c(MIR1301, RAB10, ADCY3, KLHL29, CIB4, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, HADHA, HADHB, C2orf70, PFN4, FAM228B, KCNK3, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, FAM228A, DNAJC27-AS1, CENPO, WDCP, SELENOI, NCOA1, DRC1, OTOF, TP53I3) 0.395254935601448 63 0.164107774024071 1.03234299505951 3682 0.293506586733254 4 2 2 -6.75893266179183 LTS-005 chr2 26951781 26954664 2884 * KCNK3 0.46 1 NA 1.18866398496084 49 0.174351346443905 5 5 0 -5.76484848062579 LTS-005 chr2 26954665 29245933 2291269 * c(OST4, BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, PREB, CENPA, CGREF1, EMILIN1, GPN1, ZNF513, TCF23, PLB1, FAM179A, KRTCAP3, MAPRE3, SLC4A1AP, WDR43, FOSL2, SPDYA, FTH1P3, IFT172, GCKR, SNORD53, DNAJC5G, GTF3C2, NRBP1, PRR30, KHK, MPV17, ATRAID, TMEM214, PPM1G, SLC35F6, PPP1CB, TRMT61B, DPYSL5, TRIM54, AGBL5, RBKS, FNDC4, SNORD92, UCN, SLC30A3, CAD, CCDC121, C2orf16, ZNF512, ABHD1, SLC5A6, EIF2B4, NA NA NA NA NA NA NA NA NA LTS-005 MRPL33, BRE, SNX17, SUPT7L) 0.456812900186521 99 0.0549271063591285 1.01412814659259 4388 0.267811492050614 4 2 2 -7.56982441171426 LTS-005 NA NA NA NA LTS-005 chr2 29245934 29246060 127 * FAM179A 0 1 NA 1.33113236688984 5 1.92576236851798 5 5 0 -5.76441014783314 LTS-005 chr2 29246061 31489909 2243849 * c(FAM179A, ALK, LCLAT1, EHD3, C2orf71, CAPN14, YPEL5, GALNT14, CLIP4, LBH, CAPN13) 0.393619363898852 31 0.142624094240996 1.02982185434427 1218 0.455689023021931 4 2 2 -6.74238255910252 LTS-005 chr2 31489910 31490084 175 * EHD3 0 1 NA 1.47374814074764 3 1.56548725109256 6 6 0 -5.76441018776739 LTS-005 chr2 31490085 32254761 764677 * c(EHD3, MEMO1, SRD5A2, XDH, DPY30) 0.267889428446575 12 0.243536258267448 1.05682339162707 377 0.489313387255622 4 3 1 -6.73642512433781 LTS-005 chr2 32254762 32412174 157413 * c(MEMO1, SLC30A6, SPAST, DPY30) 0.498 1 NA 1.02923073646121 175 0.222579631033631 4 4 0 -5.76710893395079 LTS-005 chr2 32412175 37317871 4905697 * c(LOC100271832, LOC100288911, MIR4765, MYADML, GPATCH11, RASGRP3, FAM98A, LINC00486, LTBP1, CRIM1, VIT, HEATR5B, TTC27, SLC30A6, BIRC6, NLRC4, STRN, MIR558, YIPF4, FEZ2) 0.433855286772245 47 0.0974780888114599 1.02205933062026 2222 0.27754605779012 4 2 2 -6.92902701640003 LTS-005 chr2 37317872 37318950 1079 * GPATCH11 NA 0 NA 0.752 1 NA NA NA NA NA LTS-005 chr2 37318951 39107841 1788891 * c(CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, SULT6B1, NDUFAF7, EIF2AK2, ATL2, SRSF7, MORN2, GEMIN6, DHX57, HNRNPLL) 0.46815297960123 52 0.0242318178326578 0.953732641770277 1692 0.240027891092544 4 2 2 -10.3578073788593 LTS-005 chr2 39107842 39117015 9174 * MORN2 0 1 NA 1.11271346539465 17 0.689841334059123 4 4 0 -5.76442897069832 LTS-005 chr2 39117016 40339986 1222971 * c(SLC8A1-AS1, ARHGEF33, TMEM178A, CDKL4, LOC375196, SLC8A1, SOS1, LOC728730, THUMPD2, MAP4K3) 0.370961319285557 17 0.182164437673606 0.942965837966116 761 0.334458864277253 3 2 1 -6.82657366455144 LTS-005 chr2 40339987 40340019 33 * c(SLC8A1-AS1, SLC8A1) NA 0 NA 1.1 1 NA NA NA NA NA LTS-005 chr2 40340020 40341605 1586 * c(SLC8A1-AS1, SLC8A1) 0.446 1 NA 1.21027709192898 33 0.129704939042895 5 5 0 -5.76468515077625 LTS-005 chr2 40341606 42181226 1839621 * c(SLC8A1-AS1, LOC388942, C2orf91, SLC8A1) 0.234570664923891 9 0.210040935163707 1.20830081219616 203 0.368331168489085 5 4 1 -6.77427352609308 LTS-005 chr2 42181227 42275463 94237 * PKDCC NA 0 NA 1.71205620487961 6 0.475221527290168 7 NA NA -5.76456895753759 LTS-005 chr2 42275464 42275726 263 * PKDCC 0.463 1 NA 0.784146750862563 3 0.299687059002109 3 3 0 -5.76441833369297 LTS-005 chr2 42275727 48809593 6533867 * c(LINC01126, LINC01119, MIR548AD, LRPPRC, SIX2, STON1, PPP1R21, PLEKHH2, OXER1, KCNG3, EPAS1, RHOQ, HAAO, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LINC01121, EPCAM, MSH2, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, MTA3, THADA, ABCG5, ABCG8, SIX3, SLC3A1, ZFP36L2, MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, PKDCC, COX7A2L, CRIPT, PREPL, SOCS5) 0.439122518511639 119 0.0982833498803059 1.00432566615225 4293 0.644195515112623 4 2 2 -6.91749914914416 LTS-005 chr2 48809594 48824267 14674 * c(STON1, STON1-GTF2A1L) 0 1 NA 1.10756958250715 44 0.217114222527403 4 4 0 -5.76464846041948 LTS-005 chr2 48824268 48956296 132029 * c(GTF2A1L, STON1, STON1-GTF2A1L, LHCGR) 0.271427578464383 10 0.224723533851412 1.03208026638797 213 0.350295104384723 4 3 1 -6.73618544515537 LTS-005 chr2 48956297 48956431 135 * c(STON1-GTF2A1L, LHCGR) 0.426 1 NA 0.932848476689273 5 0.322111005710764 3 3 0 -5.76441871120134 LTS-005 chr2 48956432 65131523 16175092 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR3682, MIR4434, MIR4432, MIR5192, CCT4, B3GNT2, GPR75, CFAP36, CCDC85A, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, EFEMP1, PSME4, EHBP1, FSHR, ERLEC1, STON1-GTF2A1L, LGALSL, LOC339803, C2orf74, LOC339807, PRORSD1P, TSPYL6, LHCGR, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, MDH1, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, PEX13, BCL11A, NA NA NA NA NA NA NA NA NA LTS-005 AFTPH, FANCL, CCDC88A, RPL23AP32, RTN4, PELI1, PPP4R3B, REL, RPS27A, PAPOLG, SPTBN1, UGP2, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, NRXN1, USP34, SERTAD2, ACYP2) 0.433030799860796 128 0.112821490551734 0.998217041996325 5771 0.270526736800978 4 2 2 -7.3817797141538 LTS-005 NA NA NA NA LTS-005 chr2 65131524 65132050 527 * LOC400958 0.452 1 NA 1.17697841055245 7 0.198019239084537 4 4 0 -5.76448509298069 LTS-005 chr2 65132051 70315899 5183849 * c(SNORA36C, MIR3126, MIR4778, ACTR2, C1D, PROKR1, SNRNP27, WDR92, ASPRV1, GKN2, APLF, SPRED2, AAK1, CEP68, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, LOC400958, PCBP1-AS1, MXD1, MEIS1, PCBP1, PLEK, ETAA1, PPP3R1, FBXO48, GKN1, PNO1, RAB1A, GMCL1, LOC644838, SLC1A4, MEIS1-AS3, ANTXR1, ARHGAP25) 0.428606605709707 73 0.125916846096533 0.981644927228308 2691 0.276222093618206 4 2 2 -7.07064646048354 LTS-005 chr2 70315900 70781005 465106 * c(LOC100133985, PCBP1, PCYOX1, C2orf42, SNRPG, TGFA, TIA1, FAM136A) 0.428332319928387 12 0.139910008955974 0.919053065180812 567 1.05675683504744 4 2 2 -6.78419891039458 LTS-005 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.773 1 NA NA NA NA NA LTS-005 chr2 70781031 73492824 2711794 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.418536595976825 68 0.136348682155526 1.0641079253355 2630 0.361162841470156 4 2 2 -6.76004767669031 LTS-005 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.909 1 NA NA NA NA NA LTS-005 chr2 73493010 74300717 807708 * c(STAMBP, FBXO41, DGUOK, EGR4, ALMS1P1, TET3, C2orf78, TPRKB, ACTG2, ALMS1, DUSP11, NAT8) 0.450132786410236 43 0.0776417362161474 0.968596953618055 1007 0.310667398638374 4 2 2 -7.12472102893657 LTS-005 chr2 74300718 74300861 144 * TET3 0 1 NA 0.774298599738163 6 0.392275753350455 3 3 0 -5.76441380020395 LTS-005 chr2 74300862 75196928 896067 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DOK1, TET3, WBP1, HTRA2, HK2, TLX2, BOLA3, C2orf81, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, MOGS, INO80B, WDR54, LOXL3, PCGF1, CCDC142, LBX2) 0.370321203687373 46 0.187496747797882 1.00140979118777 2126 0.349985834173908 4 2 2 -6.75791588968032 LTS-005 chr2 75196929 77744935 2548007 * c(MIR5000, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.391648587008528 8 0.147970074194558 1.08374252689976 362 0.295048138542132 4 2 2 -6.73656574718639 LTS-005 chr2 77744936 77745686 751 * LRRTM4 0 1 NA 1.22291678476647 15 1.35000570721898 5 5 0 -5.76441100473851 LTS-005 chr2 77745687 84864415 7118729 * c(SNAR-H, MIR4264, REG3G, CTNNA2, DHFRP3, DNAH6, LRRTM1, FUNDC2P2, REG3A, REG1A, REG1B, REG1CP, LRRTM4, SUCLG1) 0.336137720792191 11 0.216639961058141 1.04603621675889 595 0.39515978635534 4 3 1 -6.77810418732707 LTS-005 chr2 84864416 84972390 107975 * DNAH6 0.162167184270003 2 0.0339411254969543 0.566570585736136 173 0.1168720356836 2 2 0 -7.34880725151296 LTS-005 chr2 84972391 84989874 17484 * DNAH6 NA 0 NA 1.23 1 NA NA NA NA NA LTS-005 chr2 84989875 85035651 45777 * DNAH6 0.23764836932833 2 0.344361002437849 1.03274282116355 44 0.672652727142263 5 4 1 -6.73619784976683 LTS-005 chr2 85035652 85043125 7474 * DNAH6 0.493 1 NA 0.990270895862202 25 0.187803514344114 4 4 0 -5.76514862395762 LTS-005 chr2 85043126 87092840 2049715 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.44800330199489 70 0.0853815804826444 1.00336737230213 2719 0.255815032727999 4 2 2 -7.07471295262547 LTS-005 chr2 87092841 87425310 332470 * c(ANAPC1P1, LOC285074, RMND5A) 0.374696910040508 3 0.0956869897112455 0.763793821195073 136 0.248486764901382 3 2 1 -6.79575547780569 LTS-005 chr2 87425311 87425322 12 * RMND5A NA 0 NA 1.528 1 NA NA NA NA NA LTS-005 chr2 87425323 89512959 2087637 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.432900067108432 16 0.12094158369505 1.04460300435417 724 0.390906406470235 4 2 2 -6.81301303504688 LTS-005 chr2 89512960 89534350 21391 * character(0) 0 1 NA 0.948509101529561 18 0.436357456754619 4 4 0 -5.76536943401395 LTS-005 chr2 89534351 91937699 2403349 * LOC654342 0.335109978159526 16 0.126495586220758 1.16637462655364 223 1.39208282638777 6 4 2 -6.78813398652264 LTS-005 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.27502514697232 18 0.553074189258122 5 NA NA -5.76442097473169 LTS-005 chr2 95537185 95537501 317 * c(TEKT4, LOC442028) 0.458 1 NA 1.03253290991502 7 0.216137191881189 4 4 0 -5.76441494589747 LTS-005 chr2 95537502 96071571 534070 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, ZNF2, ZNF514) 0.170287330189236 10 0.216331766815078 1.05238098126302 540 0.375057103652872 4 4 0 -6.85238090987718 LTS-005 chr2 96071572 96081199 9628 * FAHD2A 0.482 1 NA 1.07721068556192 79 0.193225819023476 4 4 0 -5.76441986317363 LTS-005 chr2 96081200 99014292 2933093 * c(MIR3127, ACTR1B, ARID5A, CNGA3, TRIM43, COX5B, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, ANKRD36, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, TRIM43B, LINC01125, FAHD2CP, ZAP70, LMAN2L, FER1L5, NEURL3, CIAO1) 0.403679449505508 84 0.0996347395505263 1.00074295661893 3153 0.306377318776838 4 2 2 -6.82474144638237 LTS-005 chr2 99014293 99014587 295 * CNGA3 0 1 NA 1.46587323737807 8 1.93529043593683 6 6 0 -5.76441021255038 LTS-005 chr2 99014588 100181883 1167296 * c(TXNDC9, MGAT4A, CNGA3, LYG1, MITD1, C2orf15, LYG2, UNC50, KIAA1211L, INPP4A, AFF3, COA5, MRPL30, REV1, LIPT1, TSGA10, EIF5B) 0.270905188823353 9 0.242981480775799 1.0132443204592 1335 0.325505177578075 4 3 1 -6.75392230343284 LTS-005 chr2 100181884 100722098 540215 * AFF3 0.448 1 NA 1.06314736526838 121 0.208040370102263 4 4 0 -5.76461351655502 LTS-005 chr2 100722099 112874487 12152389 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, MERTK, EDAR, TBC1D8, GPR45, NMS, TMEM182, LINC01102, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, CREG2, LINC00116, FHL2, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, SH3RF3, IL1R1, SLC9A4, AFF3, LIMS1, SULT1C3, NPAS2, NPHP1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, RANBP2, SLC5A7, RPL31, ANAPC1, NA NA NA NA NA NA NA NA NA LTS-005 MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, RGPD4-AS1, RFX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, NCK2, C2orf40, ST6GAL2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2) 0.429193860440029 162 0.115966023914565 1.02720684382042 5672 0.311161062182758 4 2 2 -6.9177935496629 LTS-005 NA NA NA NA LTS-005 chr2 112874488 113277922 403435 * c(FBLN7, TTL, ZC3H6, RGPD8, ZC3H8, TMEM87B) 0 1 NA 1.01857995034995 421 0.33871768694769 4 4 0 -5.76927446608928 LTS-005 chr2 113277923 113346512 68590 * c(TTL, POLR1B, CHCHD5) 0.330456659607069 13 0.211934496411582 1.01578354484494 281 0.288734764374879 3 2 1 -6.7570032418384 LTS-005 chr2 113346513 113481439 134927 * c(FLJ42351, SLC20A1, CHCHD5) 0.449 1 NA 1.00231046433604 132 0.875825987721297 4 4 0 -5.76484424602712 LTS-005 chr2 113481440 116283668 2802229 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, DPP10-AS1, LINC01191, IL36G, DPP10, FAM138B, PAX8-AS1, PAX8, SLC35F5, IL1F10, DDX11L2) 0.419238550773232 49 0.128741180927731 1.00939490796104 1324 0.36057121629236 4 2 2 -6.8063913107336 LTS-005 chr2 116283669 116447273 163605 * DPP10 NA 0 NA 0.701 1 NA NA NA NA NA LTS-005 chr2 116447274 116573343 126070 * DPP10 0 1 NA 0.632856782687956 70 0.241484333300969 2 2 0 -5.76605910975798 LTS-005 chr2 116573344 116593724 20381 * DPP10 NA 0 NA 1.323 1 NA NA NA NA NA LTS-005 chr2 116593725 130900955 14307231 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, MED15P9, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, FAR2P1, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, POTEF, TMEM185B, SAP130, TMEM177, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, MARCO, DDX18, CCDC74B, NA NA NA NA NA NA NA NA NA LTS-005 HS6ST1) 0.410948854260112 113 0.140491336884415 1.0493405657965 5188 0.410176993497551 4 2 2 -6.7637788597113 LTS-005 NA NA NA NA LTS-005 chr2 130900956 130901978 1023 * CCDC74B NA 0 NA 0.729 1 NA NA NA NA NA LTS-005 chr2 130901979 130909328 7350 * c(SMPD4, CCDC74B) 0.392 1 NA 0.318600358498414 39 0.271614645259729 1 1 0 -5.76635987320727 LTS-005 chr2 130909329 130909427 99 * SMPD4 NA 0 NA 0.957 1 NA NA NA NA NA LTS-005 chr2 130909428 132277962 1368535 * c(CYP4F30P, FAR2P2, MIR4784, TUBA3E, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, GPR148, LINC01120, NOC2LP2, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, MZT2A, MZT2B, CCDC115, IMP4) 0.376182460616514 55 0.160483123712847 1.02763982156377 1308 0.565846439728243 4 2 2 -6.74119447612308 LTS-005 chr2 132277963 132278438 476 * LOC150776 0 1 NA 1.51954717823313 6 1.79390564597658 6 6 0 -5.76441013661418 LTS-005 chr2 132278439 133540278 1261840 * c(MIR663B, LYPD1, LOC150776, GPR39, C2orf27A, NCKAP5, C2orf27B, ANKRD30BL, CCDC74A) 0.308468707708188 24 0.189419919219446 1.11688075463329 309 0.671423681732862 4 3 1 -6.74505909190841 LTS-005 chr2 133540279 133540605 327 * NCKAP5 0.466 1 NA 1.04459486311471 7 0.215632955339789 4 4 0 -5.7644123245131 LTS-005 chr2 133540606 158958679 25418074 * c(CCNT2-AS1, LOC100144595, ZEB2-AS1, MIR3679, LOC100507600, MIR4773-1, MIR4773-2, STAM2, GALNT5, NXPH2, FMNL2, GALNT13, ACMSD, ACVR1C, LYPD6, LYPD6B, ARL6IP6, UPP2, DARS, RAB3GAP1, UBXN4, R3HDM1, EPC2, ARL5A, MMADHC, GPD2, HNMT, SPOPL, NCKAP5, RBM43, KCNJ3, KIF5C, RND3, LCT, TEX41, MIR128-1, MCM6, MGAT5, NEB, NR4A2, ORC4, LRP1B, RIF1, PRPF40A, MBD5, ARHGAP15, RPRM, ERMN, YY1P2, TNFAIP6, PABPC1P2, NA NA NA NA NA NA NA NA NA LTS-005 CACNB4, CXCR4, GTDC1, MAP3K19, THSD7B, TMEM163, ZRANB3, KYNU, ACVR1, CCNT2, NMI, ACVR2A, CYTIP, ZEB2) 0.418747746268911 176 0.141090879688125 1.03106860579919 7686 0.318296175659585 4 2 2 -6.94589800663801 LTS-005 NA NA NA NA LTS-005 chr2 158958680 158980390 21711 * UPP2 0 1 NA 1.17262992827838 25 0.670456690124972 4 4 0 -5.76465969999549 LTS-005 chr2 158980391 159682979 702589 * c(CCDC148, UPP2, CCDC148-AS1, PKP4, DAPL1) 0.395064965755492 6 0.195788661571604 1.07093336379893 333 0.257343928113908 4 2 2 -6.73351414713161 LTS-005 chr2 159682980 163302681 3619702 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, WDSUB1, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, BAZ2B, ITGB6, LY75, SLC4A10, RBMS1, IFIH1, MARCH7, TANC1, KCNH7, DAPL1, CD302) 0.313229209472845 42 0.130472012297777 1.40133867417701 2398 0.399141012939174 6 4 2 -6.86002633509618 LTS-005 chr2 163302682 163302772 91 * KCNH7 NA 0 NA 1.279 1 NA NA NA NA NA LTS-005 chr2 163302773 166514318 3211546 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN2A, SCN3A, CSRNP3, KCNH7) 0.281249402671418 30 0.145695734757188 1.51470739898876 1192 0.444429435644565 6 4 2 -6.83534125229678 LTS-005 chr2 166514319 166545943 31625 * CSRNP3 0.351434249203731 3 0.281469358900751 1.96320404234866 244 0.65089026962188 8 5 3 -6.73455720355116 LTS-005 chr2 166545944 166604104 58161 * character(0) NA 0 NA 1.624 1 NA NA NA NA NA LTS-005 chr2 166604105 173332338 6728234 * c(NA, LOC100506124, TTC21B-AS1, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CCDC173, UBR3, MYO3B, KLHL23, DLX1, DLX2, DYNC1I2, CERS6, METAP1D, GAD1, GALNT3, GORASP2, STK39, METTL5, ITGA6, SP5, LRP2, LINC01124, PHOSPHO2, SPC25, G6PC2, SCN1A, SCN7A, SCN9A, SSB, FASTKD1, TTC21B, METTL8, CYBRD1, DCAF17, HAT1, SLC25A12, ABCB11, B3GALT1, PPIG, TLK1) 0.329796755608778 138 0.0975419991892693 1.40487588487283 5068 0.606555632017874 6 4 2 -6.81697832736972 LTS-005 chr2 173332339 173333803 1465 * ITGA6 NA 0 NA 1.477 1 NA NA NA NA NA LTS-005 chr2 173333804 179448393 6114590 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, HOXD-AS2, TTN-AS1, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, HNRNPA3, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, HAGLR, MIR10B, NFE2L2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, SP3, TTN, WIPF1, SCRN3, LNPK, CDCA7, AGPS, PRKRA, RAPGEF4-AS1, NA NA NA NA NA NA NA NA NA LTS-005 TTC30A, CIR1) 0.318765160505132 83 0.0838733933162163 1.48721748413233 4891 0.441782916031634 6 4 2 -6.79062643365047 LTS-005 NA NA NA NA LTS-005 chr2 179448394 179452758 4365 * c(MIR548N, TTN-AS1, TTN) 0 1 NA 1.52021927858685 55 0.843441270291522 6 6 0 -5.76441020161793 LTS-005 chr2 179452759 183948321 4495563 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, TTN, SESTD1) 0.275773576443053 42 0.110816314308142 1.51174478828076 3777 0.432953266509091 6 4 2 -6.9398789130632 LTS-005 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.659 1 NA NA NA NA NA LTS-005 chr2 183951766 188210542 4258777 * c(CALCRL, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, ZC3H15, ZNF804A) 0.280225075928374 44 0.128182998397697 1.60918050505181 1402 1.19834126477373 7 5 2 -6.76514184777759 LTS-005 chr2 188210543 188216783 6241 * CALCRL 0.424 1 NA 1.73707158684336 15 0.46352325672377 7 7 0 -5.76441212275848 LTS-005 chr2 188216784 189839329 1622546 * c(CALCRL, DIRC1, COL3A1, GULP1, MIR561, TFPI) 0.322010928046693 6 0.0237353463565768 1.64316287145947 375 0.376712313729599 7 5 2 -7.13074274013211 LTS-005 chr2 189839330 189842816 3487 * COL3A1 NA 0 NA 0.984 1 NA NA NA NA NA LTS-005 chr2 189842817 196601719 6758903 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, COL3A1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.349772356681707 80 0.0501557053432709 1.40817665116807 3027 0.354471745770334 6 4 2 -6.95211563903775 LTS-005 chr2 196601720 198950240 2348521 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.328839602785264 50 0.122275366718413 1.30663285790558 2220 0.348524253414072 5 3 2 -6.83328724861256 LTS-005 chr2 198950241 198953812 3572 * PLCL1 NA 0 NA 1.5383573270331 21 0.140123686859316 6 NA NA -5.76441642954375 LTS-005 chr2 198953813 198965940 12128 * PLCL1 NA 0 NA 0.826 1 NA NA NA NA NA LTS-005 chr2 198965941 198966044 104 * PLCL1 0.17 1 NA 0.567854558151524 3 0.328959470654568 2 2 0 -5.76441315462001 LTS-005 chr2 198966045 200808644 1842600 * c(TYW5, SATB2-AS1, C2orf69, SATB2, FTCDNL1, PLCL1) 0.170260824016542 4 0.0378989885529064 0.644880198073846 391 0.290769116482939 2 2 0 -7.47176899394108 LTS-005 chr2 200808645 200813047 4403 * TYW5 NA 0 NA 0.457 1 NA NA NA NA NA LTS-005 chr2 200813048 203826688 3013641 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.118518749873108 66 0.077348062961026 0.579084262428477 3524 0.159300898008436 2 2 0 -6.9346431103617 LTS-005 chr2 203826689 230312194 26485506 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, NA NA NA NA NA NA NA NA NA LTS-005 CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, EEF1B2, PIKFYVE, LOC200726, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, GMPPA, AGFG1, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, INO80D, PID1, ANKZF1, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, CYP20A1, PTH2R, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, RAPH1, NBEAL1, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 FAM134A, GLB1L, SPAG16, CHPF, CARF, NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, DNER, CD28, TTLL4) 0.11847083405166 404 0.0648515870516649 0.62365684478028 17075 0.381680272525048 2 2 0 -6.79073168404239 LTS-005 NA NA NA NA LTS-005 chr2 230312195 239355385 9043191 * c(LOC100286922, MIR1471, UBE2F-SCLY, MIR4777, ARL4C, RAMP1, NMUR1, COPS8, SP140, CHRND, CHRNG, AGAP1, COL6A3, DIS3L2, SPATA3, FBXO36, UBE2F, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, TRAF3IP1, GBX2, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, KCNJ13, KLHL30, C2orf82, ASB18, DNAJB3, NCL, NEU2, NA NA NA NA NA NA NA NA NA LTS-005 NPPC, PRLH, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, HES6, ACKR3, PSMD1, PTMA, SNORD20, SAG, RAB17, LOC643387, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, ARMC9, EFHD1, ILKAP, ITM2C, DGKD, PER2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.124614537394934 263 0.0655228096612136 0.599661670378707 8020 0.238734457947719 2 2 0 -6.76513883489216 LTS-005 NA NA NA NA LTS-005 chr2 239355386 242815906 3460521 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2 NA NA NA NA NA NA NA NA NA LTS-005 ) 0.112974986251036 158 0.0623730797084865 0.635428834979514 4261 0.311029728894555 2 2 0 -6.79607368549193 LTS-005 NA NA NA NA LTS-005 chr2 242815907 243037218 221312 * LOC728323 NA 0 NA 0.594278422843043 39 0.104999678683398 2 NA NA -5.77333167709939 LTS-005 chr3 239351 418089 178739 * CHL1 0.081 1 NA 1.12589767725572 67 0.224061888741552 4 4 0 -5.7702108318947 LTS-005 chr3 418090 2861340 2443251 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6) 0.0641151395282547 10 0.0337212428926074 1.16834680532973 312 0.34256842344611 4 4 0 -6.87261504869255 LTS-005 chr3 2861341 2908483 47143 * CNTN4 NA 0 NA 0.813 1 NA NA NA NA NA LTS-005 chr3 2908484 5253052 2344569 * c(EGOT, BHLHE40-AS1, CNTN4, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.0721053296294233 26 0.0240996648556333 0.993468930741463 1237 0.3732553553266 4 4 0 -6.7872988528977 LTS-005 chr3 5253053 5255026 1974 * EDEM1 NA 0 NA 1.07 1 NA NA NA NA NA LTS-005 chr3 5255027 8817369 3562343 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.0651938179856276 25 0.0660371864936719 1.15073498196974 598 0.552984967572044 4 4 0 -6.77951948071709 LTS-005 chr3 8817370 8918733 101364 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-005 chr3 8918734 8940742 22009 * RAD18 0.0957696420814197 2 0.0014142135623731 0.833020838784522 103 0.138017073383014 3 3 0 -8.80920443884943 LTS-005 chr3 8940743 8944062 3320 * RAD18 NA 0 NA 1.016 1 NA NA NA NA NA LTS-005 chr3 8944063 10077955 1133893 * c(SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, LHFPL4, LOC401052, THUMPD3-AS1, OGG1, SETD5, EMC3, RAD18, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, SRGAP3) 0.0701703701489633 54 0.04319366299252 1.03096406446959 2112 0.325639341922429 4 4 0 -6.7439944988646 LTS-005 chr3 10077956 10081545 3590 * FANCD2 0.1 1 NA 0.804058014175536 13 0.14871384499201 3 3 0 -5.76459325026132 LTS-005 chr3 10081546 10089749 8204 * FANCD2 0.394029272157224 9 0.0723483087416546 1.00998578161532 61 0.395953453272566 4 2 2 -6.73531463263478 LTS-005 chr3 10089750 10089773 24 * FANCD2 0.09 1 NA 0.223 1 NA NA NA NA NA LTS-005 chr3 10089774 12810751 2720978 * c(MIR885, GHRLOS, MKRN2OS, SLC6A1-AS1, ATG7, FANCD2OS, TAMM41, FANCD2, MKRN2, LINC00606, HRH1, IRAK2, ATP2B2, GHRL, PPARG, TMEM40, BRK1, RAF1, SEC13, SLC6A1, SLC6A11, SYN2, TIMP4, VHL, TSEN2, LINC00852, VGLL4, TATDN2) 0.0852447201322683 45 0.0665104077828 1.03771140833924 2134 0.33340871752301 4 4 0 -6.76579116125572 LTS-005 chr3 12810752 12837880 27129 * TMEM40 NA 0 NA 0.559 1 NA NA NA NA NA LTS-005 chr3 12837881 45725031 32887151 * c(ACVR2B-AS1, FGD5P1, PDCD6IP, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, KRBOX1, MIR4791, MIR548AC, MIR4792, MIR4442, SNRK-AS1, SGO1-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, ZNF501, LRRC3B, GALNT15, CCR4, CCR8, ACKR2, KCNH8, LYZL4, KLHL40, TRIM71, CHCHD4, TMEM42, METTL6, CTNNB1, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, NA NA NA NA NA NA NA NA NA LTS-005 FGD5, CX3CR1, CYP8B1, DAZL, XIRP1, TTC21A, STT3B, FBLN2, TRAK1, EXOSC7, CAND2, CLASP2, GPD1L, RFTN1, NUP210, PLCL2, ANKRD28, LARS2, CAPN7, ZNF620, FBXL2, CNOT10, TMEM158, MYRIP, HIGD1A, SUSD5, HACL1, GLB1, LSM3, RBMS3, GOLGA4, NKIRAS1, ENTPD3-AS1, ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, LINC00620, DPH3, ACAA1, LOC339862, C3orf35, GADL1, ZNF860, COL6A4P1, TPRXL, ZNF445, ITGA9, TOPAZ1, ZNF662, VENTXP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RPSA, MIR128-2, MIR138-1, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, DYNC1LI1, SS18L2, CCDC174, ZDHHC3, PLCD1, SNRK, CMTM6, SLC25A38, ULK4, OXSM, ANO10, NGLY1, ZKSCAN7, KIF15, SNORA6, KIAA1143, HHATL, WDR48, RAB5A, RARB, SNORA62, RPL15, RPL32, SATB1, SCN5A, SCN10A, RBSN, AZI2, TMPPE, MRPS25, LIMD1-AS1, THRB-AS1, LINC00693, CSRNP1, GORASP1, CDCP1, SLC6A6, STAC, BTD, MIR563, MIR564, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TGM4, TGFBR2, THRB, CLEC3B, TOP2B, NR2C2, FAM198A, UBE2E1, UBE2E2, UBP1, VIPR1, WNT7A, XPC, ZNF35, TMEM43, ZNF385D, HDAC11, GRIP2, COLQ, EOMES, C3orf20, POMGNT2, EAF1, DCLK3, CCK, KAT2B, LIMD1, RPL14, SEC22C, ZNF502, LRRFIP2, OXNAD1, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SH3BP5, SLC4A7, ENTPD3, TBC1D5, EPM2AIP1, TRANK1, IQSEC1, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.115250385055449 400 0.0622567871308795 0.611033914211064 18332 0.229837854149927 2 2 0 -6.75376792904968 LTS-005 NA NA NA NA LTS-005 chr3 45725032 45725457 426 * LIMD1-AS1 NA 0 NA 0.651626126455085 8 0.0932078131305066 2 NA NA -5.76453371053023 LTS-005 chr3 45725458 45725783 326 * LIMD1-AS1 0.369 1 NA 0.98880704900321 11 0.120729750796035 4 4 0 -5.76449090560194 LTS-005 chr3 45725784 46716087 990304 * c(LOC100132146, CXCR6, CCR9, CCR1, CCR3, CCR5, SACM1L, ALS2CL, XCR1, LTF, LZTFL1, SLC6A20, LIMD1-AS1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.399850040223488 52 0.172423310165378 1.00497279314386 1553 0.388399537131892 4 2 2 -6.74997660976484 LTS-005 chr3 46716088 47059256 343169 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.365028016105981 21 0.186485822262074 1.14265546698638 852 0.572012957885725 4 2 2 -6.74629773372051 LTS-005 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.869 1 NA NA NA NA NA LTS-005 chr3 47061216 48599222 1538007 * c(MIR1226, MIR4443, NME6, CSPG5, TREX1, DHX30, SCAP, KLHL18, PTPN23, FBXW12, KIF9-AS1, SETD2, MAP4, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, KIF9, SPINK8, SMARCC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.414642607012767 49 0.155291984146433 1.03503456613077 2627 0.244245447077246 4 2 2 -6.76432309050056 LTS-005 chr3 48599223 48602525 3303 * c(COL7A1, UCN2) 0 1 NA 1.11783569235089 45 0.862438741493147 4 4 0 -5.76441551632388 LTS-005 chr3 48602526 48622458 19933 * c(MIR711, COL7A1) 0.303505168683454 12 0.227688034180742 1.07515043026886 294 0.588566425356915 4 3 1 -6.73675706429046 LTS-005 chr3 48622459 48625680 3222 * COL7A1 0.427 1 NA 1.08099092548803 47 0.196307528379396 4 4 0 -5.76441668993364 LTS-005 chr3 48625681 49449638 823958 * c(MIR4271, MIR4793, ARIH2, USP19, WDR6, COL7A1, CELSR3, KLHDC8B, LAMB2P1, NDUFAF3, GPX1, CCDC36, IMPDH2, C3orf62, RHOA, LAMB2, MIR191, TMEM89, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, ARIH2OS, C3orf84, CCDC71, SLC26A6, USP4, UQCRC1, SLC25A20) 0.453549216477591 35 0.0466799940953241 1.03812151819081 2616 0.224197389231606 4 2 2 -7.69582829366889 LTS-005 chr3 49449639 49452957 3319 * TCTA 0 1 NA 1.09745860052472 23 0.206360720670318 4 4 0 -5.76444309312585 LTS-005 chr3 49452958 49934296 481339 * c(BSN-AS2, MIR5193, TRAIP, DAG1, AMT, GMPPB, APEH, AMIGO3, CDHR4, FAM212A, MST1, MST1R, RNF123, TCTA, UBA7, CAMKV, NICN1, BSN, IP6K1) 0.351957297856073 37 0.202928581055033 1.05588930705802 1621 0.369734132887222 4 2 2 -6.75398043965549 LTS-005 chr3 49934297 49947962 13666 * c(MST1R, MON1A) 0.487 1 NA 1.0865815364079 81 0.157821680120475 4 4 0 -5.76450074762762 LTS-005 chr3 49947963 52012265 2064303 * c(PARP3, IQCF4, ABHD14A-ACY1, MIR4787, RBM5-AS1, RBM6, RBM5, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, CISH, GPR62, IQCF1, LSMEM2, DOCK3, RAD54L2, NAT6, ABHD14A, GNAI2, GNAT1, GRM2, RBM15B, HYAL1, IQCF2, IQCF5, IQCF3, IQCF6, C3orf18, ZMYND10, TEX264, HEMK1, PCBP4, SEMA3F, IFRD2, MAPKAPK3, SEMA3B, MANF, HYAL3, MON1A, ABHD14B, HYAL2, RRP9, CACNA2D2, DCAF1) 0.431277701793211 73 0.111282177293838 1.05352386166653 3359 0.27348093331837 4 2 2 -6.81917106988003 LTS-005 chr3 52012266 52012887 622 * c(ABHD14A-ACY1, ABHD14A, ABHD14B) 0 1 NA 0.960268285977533 4 0.210219726318282 4 4 0 -5.76450664110994 LTS-005 chr3 52012888 52562611 549724 * c(LINC00696, ABHD14A-ACY1, NISCH, TWF2, GLYCTK, PPM1M, DUSP7, ALAS1, STAB1, ABHD14A, POC1A, DNAH1, MIRLET7G, MIR135A1, PHF7, TLR9, SEMA3G, RPL29, NT5DC2, TNNC1, WDR82, BAP1, ABHD14B, ACY1) 0.218853871051331 17 0.228674778696219 1.06612899126047 2016 0.353306311282919 4 3 1 -6.78366653471979 LTS-005 chr3 52562612 52567463 4852 * NT5DC2 0.395 1 NA 1.06874981709135 13 0.299305199694397 4 4 0 -5.76441013471572 LTS-005 chr3 52567464 54952873 2385410 * c(SNORD19B, TMEM110-MUSTN1, CACNA2D3-AS1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, SMIM4, SFMBT1, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, LRTM1, SELENOK, NT5DC2, NEK4, SNORD19, SNORD69, TKT, CACNA1D, ESRG, RFT1, ACTR8) 0.363391023799968 38 0.181272758418146 1.04321199487416 2371 0.321388708423069 4 2 2 -6.75367046157627 LTS-005 chr3 54952874 54958884 6011 * c(CACNA2D3, LRTM1) 0.475 1 NA 1.20209951352351 11 0.858936826971153 5 5 0 -5.76443876202827 LTS-005 chr3 54958885 56469148 1510264 * c(MIR3938, ERC2, CACNA2D3, LRTM1, ERC2-IT1, WNT5A) 0.418714066410692 9 0.158693450120385 1.10439194732278 333 0.302074322576772 4 2 2 -6.76376742580776 LTS-005 chr3 56469149 56762577 293429 * c(FAM208A, ERC2, CCDC66, ARHGEF3) 0.432909237254482 14 0.091435709714471 0.888203410360088 358 0.204930147089924 4 2 2 -7.00448616336726 LTS-005 chr3 56762578 58622970 1860393 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.439225160487143 73 0.0844922789696162 1.01020661368827 2530 0.24443345491847 4 2 2 -6.99130896714642 LTS-005 chr3 58622971 58625823 2853 * FAM3D NA 0 NA 1.083 1 NA NA NA NA NA LTS-005 chr3 58625824 65355591 6729768 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.404029423014346 40 0.15558605294754 1.11940274328648 1908 0.48519209896628 4 2 2 -6.77476579634827 LTS-005 chr3 65355592 65357528 1937 * MAGI1 NA 0 NA 0.81 1 NA NA NA NA NA LTS-005 chr3 65357529 73657657 8300129 * c(MIR1284, MIR3136, MIR4272, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.421062765758043 77 0.134826695677806 1.02366243352572 2616 0.27246593019868 4 2 2 -6.88726106944003 LTS-005 chr3 73657658 74312283 654626 * c(PDZRN3, CNTN3) NA 0 NA 0.92437479878135 40 0.21416776164541 3 NA NA -5.84243541743354 LTS-005 chr3 74312284 74312394 111 * CNTN3 0 1 NA 1.69541891827688 3 0.864656579226689 7 7 0 -5.76441024249741 LTS-005 chr3 74312395 75785355 1472961 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.297917854835659 85 0.112829265429032 1.3188654687057 295 0.793603489188035 4 3 1 -6.80166513414412 LTS-005 chr3 75785356 75785370 15 * ZNF717 NA 0 NA 0.877 1 NA NA NA NA NA LTS-005 chr3 75785371 75790860 5490 * ZNF717 0.262214849772369 91 0.136462792631888 1.03221634574612 189 0.554372112938356 8 6 2 -6.73949031861061 LTS-005 chr3 75790861 75986622 195762 * ZNF717 0.419 1 NA 1.01329565368278 9 0.084303024856763 4 4 0 -5.81088847733745 LTS-005 chr3 75986623 90250988 14264366 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.431159216301529 39 0.146652140122226 1.07569621937295 1648 0.481970067592889 4 2 2 -6.78225546186224 LTS-005 chr3 90250989 90283666 32678 * character(0) NA 0 NA 1.01793596759944 19 0.283232531088268 4 NA NA -5.76498896827655 LTS-005 chr3 93591838 93773042 181205 * c(ARL13B, STX19, PROS1) 0 1 NA 1.03678066095434 191 0.297162660212239 4 4 0 -5.7655421226008 LTS-005 chr3 93773043 97499441 3726399 * c(MTHFD2P1, ARL13B, DHFR2, LINC00879, EPHA6, NSUN3, ARL6) 0.377573781549533 12 0.203455806384372 1.02122893462837 390 0.334900368476578 4 2 2 -6.7760255770684 LTS-005 chr3 97499442 97510607 11166 * ARL6 0.468 1 NA 1.06706155378094 15 0.0999526078175242 4 4 0 -5.76441171754927 LTS-005 chr3 97510608 111766215 14255608 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, LOC152225, GABRR3, ALCAM, MYH15, PLCXD2, ABI3BP, NECTIN3, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, LINC00636, PDCL3P4, TAGLN3, DUBR, TMPRSS7, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, TRAT1, IMPG2, TRMT10C, TMEM45A, IFT57, NA NA NA NA NA NA NA NA NA LTS-005 DPPA4, ABHD10, TBC1D23, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NFKBIZ, TMEM30CP, LINC00488, MIR548A3, OR5H6, OR5H2, ZBED2, CEP97, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, PHLDB2, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.431150202274375 159 0.125664166587421 1.00746424008019 5953 0.335853184783458 4 2 2 -7.05078379441518 LTS-005 NA NA NA NA LTS-005 chr3 111766216 111780576 14361 * TMPRSS7 0.419 1 NA 1.13993551422562 28 0.283253908101947 4 4 0 -5.76485722881741 LTS-005 chr3 111780577 111950328 169752 * c(GCSAM, SLC9C1, TMPRSS7, MIR567, C3orf52) 0.264904684787848 9 0.22968789210095 1.03928039693201 335 0.413227090899352 4 3 1 -6.73834129010162 LTS-005 chr3 111950329 112066562 116234 * c(SLC9C1, CD200) 0.429 1 NA 0.95322242623329 73 0.379206626927368 4 4 0 -5.77074530884145 LTS-005 chr3 112066563 121043357 8976795 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, FSTL1, LRRC58, CD200R1, ADPRH, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, GPR156, DRD3, TIGIT, USF3, ZDHHC23, NEPRO, GAP43, ZBTB20, TUSC7, RABL3, GTPBP8, GSK3B, GTF2E1, HGD, CD200R1L, LSAMP, MIR198, CD200, NDUFB4, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, TMEM39A, CFAP44, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, MIR568, UPK1B, ZNF80, NA NA NA NA NA NA NA NA NA LTS-005 QTRT2, NAA50, B4GALT4, NR1I2, MAATS1, BOC, CD80, STXBP5L) 0.407437118155436 125 0.148079185442419 1.00091366226495 5068 0.312876914325096 4 2 2 -6.9691003383947 LTS-005 NA NA NA NA LTS-005 chr3 121043358 121139678 96321 * STXBP5L 0 1 NA 0.997316409759943 79 0.382102528676914 4 4 0 -5.76630131514016 LTS-005 chr3 121139679 121346683 207005 * c(POLQ, ARGFX, FBXO40, STXBP5L) 0.269738695716865 11 0.243713803839295 1.01498103384565 419 0.480573434381004 4 3 1 -6.73698636635902 LTS-005 chr3 121346684 121351338 4655 * c(HCLS1, FBXO40) 0.496 1 NA 0.935193595065988 67 0.19969403326075 3 3 0 -5.76522248422436 LTS-005 chr3 121351339 122598293 1246955 * c(CCDC58, CSTA, DTX3L, PARP15, FAM162A, GOLGB1, ILDR1, HCLS1, KPNA1, WDR5B, PARP14, EAF2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, CD86, IQCB1) 0.433313547590753 61 0.106905972168284 1.01583504033295 2000 0.483773313274997 4 2 2 -6.83964521681098 LTS-005 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.319 1 NA NA NA NA NA LTS-005 chr3 122598385 125899708 3301324 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, MIR5002, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, PDIA5, ADCY5, OSBPL11, ROPN1B, ALG1L, HACD2, SEC22A, ITGB5, MYLK, SEMA5B, ROPN1, SLC41A3, MUC13, HEG1, CCDC14, UMPS, ZNF148, SLC12A8, DIRC2, SNX4, KALRN) 0.409623755031992 84 0.141594904202644 1.05208237453416 3109 0.334297302290937 4 2 2 -6.74928103755551 LTS-005 chr3 125899709 126062647 162939 * c(ALDH1L1-AS2, ALDH1L1, KLF15) 0 1 NA 1.16926540542925 31 0.378389203396862 4 4 0 -5.76992724507698 LTS-005 chr3 126062648 126423114 360467 * c(TXNRD3, UROC1, C3orf22, CHST13, NUP210P1, KLF15, CFAP100, TXNRD3NB, ZXDC, CHCHD6) 0.292497782142249 11 0.20470581996434 1.03883580387042 572 0.335663122491935 4 3 1 -6.7352612843853 LTS-005 chr3 126423115 126445831 22717 * CHCHD6 NA 0 NA 1.744 1 NA NA NA NA NA LTS-005 chr3 126445832 127340630 894799 * c(TPRA1, MCM2, PLXNA1, CHCHD6) 0.189084725051668 9 0.19017455432079 1.59501887886226 518 0.668602500958104 6 5 1 -6.73802388947392 LTS-005 chr3 127340631 127396285 55655 * c(MCM2, PODXL2, ABTB1) 0.343 1 NA 1.42131343509181 109 0.384567737708418 6 6 0 -5.76556544784121 LTS-005 chr3 127396286 133342876 5946591 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR5704, TOPBP1, MRPL3, MGLL, CPNE4, NUDT16, COL6A6, RPL32P3, H1FOO, NUDT16P1, DNAJB8, KBTBD12, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, COL6A5, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, SEC61A1, PIK3R4, RAB43, LOC339874, H1FX-AS1, NPHP3-AS1, ACKR4, ACPP, CDV3, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, COL6A4P2, LOC653712, TMEM108, SNORA7B, NA NA NA NA NA NA NA NA NA LTS-005 SNORA58, TRH, FAM86HP, CNBP, RAB7A, EFCC1, NEK11, UBA5, ABTB1, ACAD11, BFSP2, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.326051438061308 124 0.109404475684334 1.46088278310287 5037 0.392672191575876 6 4 2 -6.78997788500911 LTS-005 NA NA NA NA LTS-005 chr3 133342877 133464942 122066 * c(TOPBP1, TF) 0 1 NA 1.43114425674862 75 0.688868294267378 6 6 0 -5.76505505064489 LTS-005 chr3 133464943 133547026 82084 * c(RAB6B, SRPRB, TF) 0.188260405191164 13 0.175359557364218 1.56302089668774 265 0.905308171251231 6 5 1 -6.73665467569618 LTS-005 chr3 133547027 133614375 67349 * RAB6B 0.333 1 NA 1.46067662935527 51 0.242514083682399 6 6 0 -5.76575335597984 LTS-005 chr3 133614376 138215777 4601402 * c(MIR4788, STAG1, DZIP1L, EPHB1, MRAS, ANAPC13, ARMC8, KY, NME9, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, RAB6B, IL20RB, MSL2, PPP2R3A, RYK, SLCO2A1, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14) 0.330500955566798 68 0.0889295476345934 1.49265518515655 2463 0.411364038655115 6 4 2 -6.75090236369934 LTS-005 chr3 138215778 138216814 1037 * CEP70 0 1 NA 1.72278990330593 11 1.3624572720573 7 7 0 -5.76441025473578 LTS-005 chr3 138216815 139071424 854610 * c(PISRT1, PRR23B, PRR23C, FOXL2NB, PIK3CB, FAIM, MRPS22, BPESC1, FOXL2, PRR23A, CEP70) 0.212990484479754 13 0.171772359795584 1.47748883378402 581 0.429256247384301 6 5 1 -6.73854853461684 LTS-005 chr3 139071425 139090693 19269 * c(MRPS22, COPB2) 0.39 1 NA 1.53490552455985 77 0.494229665993229 6 6 0 -5.76441148872106 LTS-005 chr3 139090694 141011308 1920615 * c(TRIM42, NMNAT3, SLC25A36, RBP1, RBP2, CLSTN2, SPSB4, PXYLP1, COPB2) 0.294045479896551 24 0.13998198641875 1.53951078979683 732 0.558926772197665 7 5 2 -6.79843944207859 LTS-005 chr3 141011309 143692464 2681156 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, C3orf58, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, PAQR9, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, TRPC1, PXYLP1, CHST2, RNF7) 0.326863573280233 54 0.125486703074459 1.39592832074628 2374 0.368831388740791 6 4 2 -6.8348408706338 LTS-005 chr3 143692465 143704365 11901 * C3orf58 NA 0 NA 1.078 1 NA NA NA NA NA LTS-005 chr3 143704366 143711070 6705 * C3orf58 0.112 1 NA 1.04514208062078 65 0.84744054562275 4 4 0 -5.76441291804627 LTS-005 chr3 143711071 189586435 45875365 * c(MIR944, WWTR1-AS1, LOC100128164, LOC100131635, MIR1224, TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, ABCC5-AS1, TPRG1-AS2, KCNAB1-AS2, KCNAB1-AS1, ADIPOQ-AS1, LINC01014, LOC101243545, ALG3, KCNMB2, IGF2BP2, PDCD10, RNF13, TM4SF18, RPL39L, MED12L, CLRN1-AS1, AP2M1, CLCN2, AADAC, DNAJC19, OTOL1, FAM131A, NA NA NA NA NA NA NA NA NA LTS-005 ERICH6, RTP1, CP, CPA3, CPB1, CRYGS, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, DGKG, SPTSSB, DHX36, HTR3C, AGTR1, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, AADACP1, EPHB3, C3orf58, ETV5, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, VPS8, LOC253573, NAALADL2, WWTR1, TIPARP, ARHGEF26, GHSR, GPR160, FETUB, LAMP3, KCNMB3, SERP1, GOLIM4, HTR3E, IGSF10, C3orf33, C3orf70, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TPRG1, TRIM59, GPR171, GYG1, SCHIP1, HRG, CCDC39, LINC00880, EHHADH-AS1, LPP-AS2, LRRIQ4, SAMD7, AADACL2, GPR149, NMRAL1P1, RTP2, SOX2-OT, IL12A, KNG1, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, FLJ42393, LPP, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, CLDN11, P2RY1, NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, DNAJB11, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PLSCR1, P2RY13, GPR87, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, PLSCR2, PSMD2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, TMEM14EP, LINC01330, IGF2BP2-AS1, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, ST6GAL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SST, SCARNA7, SNORA81, SNORD66, MIR551B, MIR569, TERC, THPO, SEC62, TM4SF4, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, ZIC4, HPS3, ACTRT3, GFM1, ACTL6A, TP63, CHRD, B3GALNT1, TNFSF10, GMPS, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, SLC33A1, EGFEM1P, ADIPOQ, CAMK2N2, ECE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TSC22D2, P2RY14) 0.323300871071667 502 0.100763310513146 1.44163341512239 21088 0.44367080971626 6 4 2 -7.18086734968234 LTS-005 NA NA NA NA LTS-005 chr3 189586436 189586439 4 * TP63 NA 0 NA 1.627 1 NA NA NA NA NA LTS-005 chr3 189586440 194077283 4490844 * c(DPPA2P3, LINC00887, SNAR-I, OPA1-AS1, CLDN16, LRRC15, TMEM207, CPN2, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, HES1, OSTN, ATP13A5, IL1RAP, OPA1, P3H2, HRASLS, GMNC, LOC647323, ATP13A4, MGC2889, TP63, CLDN1) 0.311580700591934 72 0.0635183962237865 1.5705814884772 1884 0.601402505765055 7 5 2 -6.83547276396753 LTS-005 chr3 194077284 195345497 1268214 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.336165246232183 32 0.0882401815336799 1.38564670843108 1094 0.480447814263159 6 4 2 -6.76625622616219 LTS-005 chr3 195345498 195345512 15 * character(0) NA 0 NA 0.733 1 NA NA NA NA NA LTS-005 chr3 195345513 195346730 1218 * character(0) NA 0 NA 0.378240264477097 53 0.368312995955669 1 NA NA -5.76441057564697 LTS-005 chr3 195346731 195346814 84 * character(0) NA 0 NA 0.781 1 NA NA NA NA NA LTS-005 chr3 195346815 197765967 2419153 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, MIR570, TFRC, SDHAP2, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.314337144747172 121 0.120678811239147 1.36577547131444 3293 0.4768279814524 6 4 2 -6.84201497758542 LTS-005 chr3 197765968 197770512 4545 * LMLN NA 0 NA 1.37576923124028 89 0.538527060169905 5 NA NA -5.76444221025832 LTS-005 chr4 53174 53360 187 * c(ZNF595, ZNF718) 0.107 1 NA 1.2170994045178 3 0.687926110373297 5 5 0 -5.76441110451685 LTS-005 chr4 53361 265399 212039 * c(ZNF595, ZNF718, ZNF876P, ZNF732) 0.286011550844918 10 0.192405849991915 1.05415957073862 120 0.352332893819505 4 3 1 -6.73322545880961 LTS-005 chr4 265400 265637 238 * ZNF732 0.479 1 NA 0.82131261041091 7 0.204389683832484 3 3 0 -5.76441180236564 LTS-005 chr4 265638 378661 113024 * c(ZNF732, ZNF141) 0.451702213047647 11 0.0779640942998763 1.080443235095 126 0.424460235765415 4 2 2 -7.09079722294636 LTS-005 chr4 378662 420259 41598 * ABCA11P NA 0 NA 1.419 1 NA NA NA NA NA LTS-005 chr4 420260 517622 97363 * c(ZNF721, PIGG, ABCA11P) 0.478151771698637 9 0.0181735460980453 1.24750176612464 207 0.254665467068575 4 2 2 -11.9977417428962 LTS-005 chr4 517623 533229 15607 * PIGG 0 1 NA 1.40478739646923 23 1.36523920358447 5 5 0 -5.76444171402961 LTS-005 chr4 533230 982678 449449 * c(LOC100129917, PCGF3, CPLX1, SLC26A1, DGKQ, GAK, IDUA, MYL5, PDE6B, ATP5I, PIGG, MFSD7, TMEM175) 0.355285406568041 23 0.198609364940068 1.37169964985832 868 0.643615820937098 6 4 2 -6.74327053728848 LTS-005 chr4 982679 983060 382 * c(SLC26A1, IDUA) 0.477 1 NA 1.34705510364085 9 0.213240474582102 5 5 0 -5.76441713649692 LTS-005 chr4 983061 1303471 320411 * c(LOC100130872, TMED11P, MAEA, SPON2, SLC26A1, CTBP1, RNF212, IDUA, FGFRL1, CTBP1-AS2) 0.460368297990347 42 0.0439398345380755 1.33086585134248 590 0.370727938008492 6 3 3 -8.01119879561222 LTS-005 chr4 1303472 1741740 438269 * c(MAEA, TACC3, FAM53A, CRIPAK, UVSSA, SLBP, TMEM129) 0.442926065293125 27 0.0968096202043091 1.12890578355075 587 0.337358899524863 4 2 2 -6.91629781937242 LTS-005 chr4 1741741 1746844 5104 * TACC3 0.086 1 NA 1.20653903726693 21 0.201846098845253 5 5 0 -5.76480889186162 LTS-005 chr4 1746845 2172559 425715 * c(MIR943, TACC3, FGFR3, NAT8L, POLN, LETM1, C4orf48, SCARNA22, WHSC1, NELFA) 0.399612850253933 25 0.0937293443911777 1.15517985964049 1024 0.474037196516709 4 2 2 -6.74665793944151 LTS-005 chr4 2172560 2172763 204 * POLN NA 0 NA 0.951 1 NA NA NA NA NA LTS-005 chr4 2172764 3215835 1043072 * c(MIR4800, HTT-AS, MFSD10, MXD4, ADD1, GRK4, HTT, NOP14-AS1, POLN, CFAP99, ZFYVE28, RNF4, SH3BP2, TNIP2, HAUS3, NOP14, FAM193A) 0.400891680576851 62 0.139024961711367 1.03338082571803 1720 0.365084671645646 4 2 2 -6.74224052823478 LTS-005 chr4 3215836 3216815 980 * HTT 0.422 1 NA 1.1958533190633 5 0.187012833784208 5 5 0 -5.76452235304468 LTS-005 chr4 3216816 3249287 32472 * HTT 0.159300909958326 9 0.244166837315071 1.12095458077121 186 0.58528673045264 7 6 1 -6.74719685108994 LTS-005 chr4 3249288 3249521 234 * character(0) 0.438 1 NA 1.11804329523469 6 0.307778275170075 4 4 0 -5.76441314112876 LTS-005 chr4 3249522 3417845 168324 * c(MSANTD1, RGS12) 0.455638199219208 10 0.0408331292511907 1.09016645594652 198 0.345294607983704 4 2 2 -7.99367110343406 LTS-005 chr4 3417846 3422429 4584 * RGS12 0 1 NA 1.18495726452771 15 1.36985022469438 5 5 0 -5.76442224142307 LTS-005 chr4 3422430 4421132 998703 * c(LOC100133461, OTOP1, ADRA2C, ZBTB49, NSG1, DOK7, LINC00955, HGFAC, FAM86EP, LRPAP1, STX18, LYAR, RGS12, TMEM128) 0.359649792611393 52 0.15457728570169 1.1339123448836 767 0.606652284762747 4 2 2 -6.76127063908912 LTS-005 chr4 4421133 4459301 38169 * STX18 0.44 1 NA 1.02063790749284 67 0.184326946857632 4 4 0 -5.76583709323608 LTS-005 chr4 4459302 7435013 2975712 * c(LOC100129931, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, CRMP1, JAKMIP1, EVC, MAN2B2, CCDC96, LOC285484, MSX1, STX18, CYTL1, PPP2R2C, BLOC1S4, STK32B, TBC1D14, SORCS2, S100P, FLJ36777, WFS1, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.437478869348799 89 0.121337395448471 1.05403630293171 2080 0.402479419522107 4 2 2 -6.82689276516238 LTS-005 chr4 7435014 7435305 292 * c(SORCS2, PSAPL1) 0.479 1 NA 1.27228800257847 5 0.804474673311721 5 5 0 -5.76441024025027 LTS-005 chr4 7435306 7735133 299828 * c(MIR4274, SORCS2, PSAPL1) 0.316944935198761 9 0.23368645898107 1.20130514802535 148 0.816153934672753 4 3 1 -6.74752737965779 LTS-005 chr4 7735134 7736018 885 * SORCS2 0.463 1 NA 0.865680451583113 3 0.0411865673895426 3 3 0 -5.76470055744576 LTS-005 chr4 7736019 8453746 717728 * c(TRMT44, SH3TC1, SORCS2, AFAP1, ACOX3, ABLIM2, AFAP1-AS1, HTRA3) 0.449826887663015 55 0.0721112729761144 1.08382616056399 891 0.313526475718851 4 2 2 -7.12492257496087 LTS-005 chr4 8453747 8465659 11913 * TRMT44 0 1 NA 1.21512949561573 11 1.64946507031274 5 5 0 -5.76442149120321 LTS-005 chr4 8465660 9987324 1521665 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, CPZ) 0.326119254819889 9 0.232521504381853 1.10468940349983 327 0.55454587507129 4 3 1 -6.75448802462707 LTS-005 chr4 9987325 9998440 11116 * SLC2A9 0.465 1 NA 1.20391854880448 5 0.576568469481292 5 5 0 -5.76452303575045 LTS-005 chr4 9998441 13604682 3606242 * c(MIR3138, CLNK, BOD1L1, LINC01097, LINC01096, SLC2A9, NKX3-2, MIR572, ZNF518B, RAB28, WDR1, HS3ST1) 0.43675587282889 30 0.120813473595865 1.06513568539303 977 0.262931895266755 4 2 2 -6.82318778635949 LTS-005 chr4 13604683 13621733 17051 * BOD1L1 0.150009473537372 3 0.0182300118851671 0.71245147659639 92 0.170339296323409 8 7 1 -7.1403135240822 LTS-005 chr4 13621734 13627960 6227 * BOD1L1 NA 0 NA 1.586 1 NA NA NA NA NA LTS-005 chr4 13627961 16198378 2570418 * c(MIR5091, C1QTNF7, CPEB2, LINC01085, TAPT1, BOD1L1, FBXL5, FAM200B, CPEB2-AS1, CC2D2A, BST1, FGFBP2, PROM1, CD38, FGFBP1) 0.422616514670341 40 0.125702905745335 1.02221685466457 1157 0.296211109421012 4 2 2 -6.80854698279898 LTS-005 chr4 16198379 16240441 42063 * c(TAPT1, TAPT1-AS1) 0.405 1 NA 0.991464001852272 23 0.454420897163253 4 4 0 -5.76509784051758 LTS-005 chr4 16240442 17578817 1338376 * c(MIR548AX, TAPT1-AS1, QDPR, CLRN2, LDB2) 0.252242508847895 9 0.235450631768105 1.03941818440435 193 0.530057290912403 4 3 1 -6.74722315974306 LTS-005 chr4 17578818 17600132 21315 * LAP3 0.458 1 NA 0.978909923384303 55 0.183362085899606 4 4 0 -5.76733823402217 LTS-005 chr4 17600133 20730601 3130469 * c(SLIT2-IT1, PACRGL, LCORL, FAM184B, MIR218-1, LAP3, DCAF16, NCAPG, MED28, KCNIP4, SLIT2) 0.434615769000739 26 0.130491473343604 1.07675810021259 1015 0.321740174328775 4 2 2 -6.80442465081824 LTS-005 chr4 20730602 20730767 166 * c(PACRGL, KCNIP4) 0 1 NA 1.00112302072101 7 1.64914550745588 4 4 0 -5.76441028997798 LTS-005 chr4 20730768 22456440 1725673 * c(LOC100505912, PACRGL, ADGRA3, KCNIP4-IT1, KCNIP4) 0.190319797223145 10 0.244882851811047 1.11455266509266 234 0.896569318431868 5 4 1 -6.78424041572643 LTS-005 chr4 22456441 23795064 1338624 * c(PPARGC1A, ADGRA3, GBA3) 0.497 1 NA 1.01260037561184 119 0.274875038615231 4 4 0 -5.79516164590373 LTS-005 chr4 23795065 36068571 12273507 * c(MIR4275, SLC34A2, PPARGC1A, ARAP2, DHX15, SEL1L3, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, SMIM20, PCDH7, SEPSECS, LGI2, TBC1D19, PI4K2B, STIM2, SOD3, MIR573, CCKAR, CCDC149) 0.387034569310956 39 0.165593183930084 1.02207310289046 2057 0.277924250299515 4 2 2 -6.91716760343568 LTS-005 chr4 36068572 36075373 6802 * ARAP2 0.498 1 NA 1.02046212165034 29 0.212519005235313 4 4 0 -5.76460288772638 LTS-005 chr4 36075374 40813714 4738341 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.459316032716938 85 0.0571510921937243 0.983273899203692 3134 0.267150756444334 4 2 2 -7.77784500375561 LTS-005 chr4 40813715 40814172 458 * APBB2 0.419 1 NA 0.931138166523538 11 0.196594552777584 3 3 0 -5.76448594047747 LTS-005 chr4 40814173 41611575 797403 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1) 0.309848712109928 9 0.230532415170718 1.07677354416761 257 0.491072174030462 4 3 1 -6.73979676989611 LTS-005 chr4 41611576 41628760 17185 * LIMCH1 0.495 1 NA 1.08059038643346 59 0.192886603899192 4 4 0 -5.76444404804823 LTS-005 chr4 41628761 47951945 6323185 * c(ATP8A1, SLC30A9, CORIN, CNGA1, GNPDA2, NFXL1, SHISA3, COX7B2, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, KCTD8, BEND4, GRXCR1, COMMD8, TMEM33, ATP10D, GUF1, PHOX2B) 0.427123462986433 97 0.114885088449763 1.04557781060912 2928 0.327083651593031 4 2 2 -6.81307619798753 LTS-005 chr4 47951946 47954593 2648 * CNGA1 0 1 NA 1.19445511129605 9 1.05254680550452 5 5 0 -5.76441998941064 LTS-005 chr4 47954594 48895977 941384 * c(CNGA1, OCIAD2, NIPAL1, SLC10A4, FRYL, ZAR1, OCIAD1, SLAIN2, TEC, TXK) 0.383884058710967 18 0.17550416638445 1.01937921784507 1012 0.278482147125129 4 2 2 -6.7498973451503 LTS-005 chr4 48895978 49064107 168130 * c(OCIAD2, CWH43) NA 0 NA 0.960412221612265 108 0.239021824684831 4 NA NA -5.78449707514203 LTS-005 chr4 52709193 52714511 5319 * DCUN1D4 0.395 1 NA 1.02217076838195 17 0.344249364560053 4 4 0 -5.76446349172728 LTS-005 chr4 52714512 52962521 248010 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0.210861567355798 9 0.223500994280662 1.10787713393733 408 0.426393446676535 5 4 1 -6.76150416140769 LTS-005 chr4 52962522 53729429 766908 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, DANCR, USP46, RASL11B, SNORA26) 0.44 1 NA 1.04367573643882 221 0.240309648045276 4 4 0 -5.76888095619765 LTS-005 chr4 53729430 56238886 2509457 * c(SRD5A3-AS1, LNX1-AS1, LNX1-AS2, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, RASL11B, SRD5A3, FIP1L1, LNX1) 0.419686432198407 24 0.133444962329098 1.06479364169535 1052 0.29703543977471 4 2 2 -6.76347797780891 LTS-005 chr4 56238887 57897570 1658684 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.454485791177616 27 0.0443263280886581 0.982338950735358 1577 0.26022409455611 4 2 2 -7.90385341654482 LTS-005 chr4 57897571 61788512 3890942 * c(IGFBP7-AS1, IGFBP7) NA 0 NA 1.09289215009316 33 0.245262930959879 4 NA NA -5.78379010360425 LTS-005 chr4 62362850 62542517 179668 * ADGRL3 0.27 1 NA 1.60271395987517 25 0.307437934115706 6 6 0 -5.7671004046175 LTS-005 chr4 62542518 66185550 3643033 * c(EPHA5, ADGRL3, TECRL, LOC401134) 0.282018729480278 15 0.100862707252412 1.88993750690008 311 0.630052453104091 8 6 2 -6.7548924921321 LTS-005 chr4 66185551 66196706 11156 * EPHA5 0.457872432763892 5 0.0179220534537759 1.07242378873251 107 0.26212364712737 4 2 2 -10.8136342754738 LTS-005 chr4 66196707 66201790 5084 * EPHA5 NA 0 NA 1.08917923514051 29 0.150012125946653 4 NA NA -5.76445895223696 LTS-005 chr4 66201791 66213777 11987 * EPHA5 NA 0 NA 0.746 1 NA NA NA NA NA LTS-005 chr4 66213778 66270241 56464 * EPHA5 0.143 1 NA 0.633816244446956 39 0.1673060542523 2 2 0 -5.76608222912528 LTS-005 chr4 66270242 68906179 2635938 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.119889589290914 29 0.0498891134950321 0.609211412743178 785 0.202482647423117 2 2 0 -6.74478167105968 LTS-005 chr4 68906180 68907460 1281 * UBA6-AS1 NA 0 NA 0.277152129604244 40 0.171366706442422 1 NA NA -5.76708716677013 LTS-005 chr4 68907461 76404504 7497044 * c(FTLP10, CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, UGT2B28, PPBP, ODAM, UBA6-AS1, LOC550113, NA NA NA NA NA NA NA NA NA LTS-005 UTP3, UGT2A2, OPRPN, CXCL6, CXCL5, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.135706623224289 86 0.0521997282359494 0.625654190602975 4055 0.216192406930322 2 2 0 -6.80630451505758 LTS-005 NA NA NA NA LTS-005 chr4 76404505 76404508 4 * RCHY1 NA 0 NA 0.579 1 NA NA NA NA NA LTS-005 chr4 76404509 89857615 13453107 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, FAM13A, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DMP1, DSPP, FGF5, SEC31A, WDFY3, CNOT6L, C4orf22, RCHY1, NAP1L5, GK2, NAAA, COQ2, FAM13A-AS1, ANXA3, HNRNPD, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, CXCL10, WDFY3-AS2, ART3, NA NA NA NA NA NA NA NA NA LTS-005 CXCL9, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PKD2, NUDT9, NUP54, PPEF2, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, CXCL11, MRPL1, BMP3, SPP1, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, USO1, HERC3, STBD1, CDKL2, CCNG2, ABCG2, SCARB2, G3BP2, HNRNPDL) 0.133312363705974 257 0.059050565338362 0.595722826169544 9111 0.200892903690868 2 2 0 -6.86093770802044 LTS-005 NA NA NA NA LTS-005 chr4 89857616 89857759 144 * FAM13A NA 0 NA 0.842 1 NA NA NA NA NA LTS-005 chr4 89857760 98865141 9007382 * c(STPG2-AS1, FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.120435993653453 62 0.0748932979741071 0.654666759518934 1835 0.535637069086087 2 2 0 -6.82711424441932 LTS-005 chr4 98865142 120425786 21560645 * c(SNHG8, MIR1243, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, SYNPO2, EGF, EIF4E, ENPEP, FABP2, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, CFI, LRIT3, PCNAP1, LINC01061, C4orf3, MANBA, MIR302B, MTTP, NA NA NA NA NA NA NA NA NA LTS-005 NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, GAR1, USP53, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, METTL14, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, PDE5A, FLJ20021, PAPSS1, AIMP1, TIFA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 NDST3, TRMT10A, TBCK, SEC24D) 0.126773344850793 179 0.0602874925572044 0.613382712475751 9629 0.299601298048355 2 2 0 -6.73582450854661 LTS-005 NA NA NA NA LTS-005 chr4 120425787 120426977 1191 * PDE5A NA 0 NA 0.171 1 NA NA NA NA NA LTS-005 chr4 120426978 120473858 46881 * PDE5A NA 0 NA 0.280519456073534 39 0.204512405214548 1 NA NA -5.82751316364022 LTS-005 chr4 120473859 120474727 869 * PDE5A NA 0 NA 0.668 1 NA NA NA NA NA LTS-005 chr4 120474728 155457225 34982498 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, LINC01095, MIR4799, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, PRDM5, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZNF827, SH3D19, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, EDNRA, ELF2, TIGD4, TMEM154, FGF2, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, LINC01091, RNF175, GYPA, GYPB, GYPE, ANXA2P1, NA NA NA NA NA NA NA NA NA LTS-005 ANXA5, PRSS48, IL2, IL15, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, GATB, PLRG1, EXOSC9, PCDH18, DKFZP434I0714, POU4F2, OTUD4, DCHS2, LARP1B, BBS7, FBXW7, MAML3, TMEM184C, ANKRD50, RNF150, PCDH10, IL21, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, HHIP-AS1, C4orf51, TLR2, TRPC3, CETN4P, FAM160A1, UCP1, NDNF, FAT4, ARHGAP10, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TTC29, MND1, SLC10A7, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PRMT9, LRBA) 0.133814000259636 237 0.0548797190099118 0.61164967049219 11625 0.448453390084735 2 2 0 -6.74304298832476 LTS-005 NA NA NA NA LTS-005 chr4 155457226 155457232 7 * PLRG1 NA 0 NA 0.994 1 NA NA NA NA NA LTS-005 chr4 155457233 184242947 28785715 * c(CLDN24, MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, RBM46, AGA, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GPM6A, LINC01098, GRIA2, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC340017, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NA NA NA NA NA NA NA NA NA LTS-005 NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, CLDN22, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, DDX60, TENM3, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TDO2, TLL1, LINC00290, VEGFC, HAND2-AS1, MAP9, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.127446264782616 174 0.0567189969496618 0.628197006628326 7923 0.345687439952177 2 2 0 -6.84643891241061 LTS-005 NA NA NA NA LTS-005 chr4 184242948 186539862 2296915 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.123742187521743 62 0.0543541790920437 0.585916346337716 1867 0.211331317946787 2 2 0 -6.78738926067674 LTS-005 chr4 186539863 189662289 3122427 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.112731641455648 27 0.0533431080786185 0.64857482487035 1177 0.218805642306953 2 2 0 -6.91307106208886 LTS-005 chr4 189662290 189663057 768 * character(0) NA 0 NA 0.56157595053338 15 0.12362181191421 2 NA NA -5.76462178469584 LTS-005 chr4 189663058 189663073 16 * character(0) NA 0 NA 0.791 1 NA NA NA NA NA LTS-005 chr4 189663074 190862083 1199010 * FRG1 0.409 1 NA 1.0013531993731 39 0.275876199522336 4 4 0 -5.80419595816231 LTS-005 chr4 190862084 190946102 84019 * FRG1 0.302594338009775 13 0.186269345923502 0.887021124847389 59 0.446056485953967 4 3 1 -6.74682907701138 LTS-005 chr4 190946103 190981567 35465 * character(0) NA 0 NA 0.938483956218886 16 0.11171145867815 3 NA NA -5.78543072895485 LTS-005 chr5 140347 140532 186 * PLEKHG4B 0.43 1 NA 1.45597306761933 3 1.13053851475009 6 6 0 -5.76441033015021 LTS-005 chr5 140533 662906 522374 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.446291914109726 72 0.0818794631081154 1.02157409830984 1037 0.376839899068577 4 2 2 -7.01160343601044 LTS-005 chr5 662907 662955 49 * TPPP 0.39 1 NA 1.23136088126552 2 0.539522474045336 5 5 0 -5.76441040715996 LTS-005 chr5 662956 748217 85262 * TPPP 0.359514473946022 9 0.152514844450558 1.11070622435734 119 0.632241781838387 3 2 1 -6.74452151839851 LTS-005 chr5 748218 748316 99 * character(0) NA 0 NA 1.452 1 NA NA NA NA NA LTS-005 chr5 748317 850623 102307 * ZDHHC11 0.337848347227132 16 0.118844366014268 1.46546944805989 142 0.672133667187396 6 4 2 -6.73390272049257 LTS-005 chr5 850624 850715 92 * ZDHHC11 NA 0 NA 0.854 1 NA NA NA NA NA LTS-005 chr5 850716 1255492 404777 * c(LOC100506688, MIR4635, SLC12A7, SLC6A19, SLC6A18, BRD9, TERT, ZDHHC11, NKD2, TRIP13) 0.369081475111284 35 0.177291683889771 1.1125555672787 707 0.549592347096961 4 2 2 -6.74240470701301 LTS-005 chr5 1255493 1317949 62457 * c(MIR4457, TERT) 0.496 1 NA 1.04548975938944 97 0.235208816342465 4 4 0 -5.76473675676764 LTS-005 chr5 1317950 7900393 6582444 * c(MIR4277, MIR4278, MIR4454, ADCY2, PAPD7, UBE2QL1, C5orf49, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, LINC01019, LINC01020, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, NSUN2, MRPL36, SLC6A3, SRD5A1, SDHAP3, LOC728613, FASTKD3, IRX1, LPCAT1, CLPTM1L, MED10) 0.441392454790247 83 0.0929160307730084 1.07450455202568 1956 0.343928986452536 4 2 2 -6.91444402874931 LTS-005 chr5 7900394 7900598 205 * MTRR 0.438 1 NA 1.27131921625037 5 0.241814598401337 5 5 0 -5.76441101828232 LTS-005 chr5 7900599 9043133 1142535 * c(MIR4458HG, MIR4458, MTRR, LOC729506, SEMA5A) 0.234978051564487 9 0.235427330141973 1.2014864675411 194 0.611730756156565 5 4 1 -6.74391910834119 LTS-005 chr5 9043134 10226478 1183345 * c(SNORD123, SNHG18, MIR4636, FAM173B, LOC285692, TAS2R1, SEMA5A) 0.483 1 NA 1.06843553881153 156 0.263416341917909 4 4 0 -5.76441077230489 LTS-005 chr5 10226479 14479333 4252855 * c(ROPN1L-AS1, MARCH6, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, LINC01194, ANKRD33B, TRIO, ROPN1L) 0.453314464654922 36 0.0811324754425043 1.04917115060533 1406 0.310253350041199 4 2 2 -7.09031379295417 LTS-005 chr5 14479334 14487530 8197 * TRIO 0.452 1 NA 0.960692515285678 29 0.141958173955251 4 4 0 -5.76717902734643 LTS-005 chr5 14487531 14612499 124969 * c(FAM105A, TRIO) 0.209353332813818 9 0.2316526374649 1.13059549169271 227 0.631335121307872 5 4 1 -6.74501494606261 LTS-005 chr5 14612500 14695447 82948 * c(FAM105A, OTULIN) 0.487 1 NA 1.0312983802047 95 0.188246882284434 4 4 0 -5.76619216193192 LTS-005 chr5 14695448 32072213 17376766 * c(LOC100130744, CDH6, MIR4279, MIR4637, CDH9, CDH10, CDH12, CDH18, BASP1, PDZD2, FBXL7, LOC285696, DROSHA, LOC340107, LOC401177, MARCH11, MYO10, PMCHL1, FAM134B, C5orf22, ANKH, PRDM9, LINC01021, GUSBP1, LSP1P3, OTULIN, ZNF622) 0.424725783537996 43 0.13922491105492 1.07460924491036 2007 0.296635399006903 4 2 2 -6.77444329623362 LTS-005 chr5 32072214 32072303 90 * PDZD2 NA 0 NA 0.899 1 NA NA NA NA NA LTS-005 chr5 32072304 32716589 644286 * c(SUB1, PDZD2, NPR3, ZFR, MTMR12, GOLPH3) 0.449305967748267 19 0.111251650884656 0.989177651038191 713 0.43327162301831 4 2 2 -6.9129915008158 LTS-005 chr5 32716590 32738969 22380 * NPR3 0 1 NA 1.26400054737468 11 0.684597519449467 5 5 0 -5.76442998057548 LTS-005 chr5 32738970 33972113 1233144 * c(LOC340113, NPR3, SLC45A2, RXFP3, TARS, ADAMTS12) 0.357532924942623 18 0.192796143481078 1.0782527174814 631 0.314629753352195 4 2 2 -6.75023897288497 LTS-005 chr5 33972114 33989518 17405 * c(AMACR, SLC45A2) 0.479 1 NA 1.11611195323275 81 0.339389967441585 4 4 0 -5.76458093588988 LTS-005 chr5 33989519 35954143 1964625 * c(C1QTNF3, UGT3A1, CAPSL, DNAJC21, TTC23L, AMACR, RAI14, IL7R, BRIX1, PRLR, RAD1, AGXT2, SPEF2) 0.441469100334845 68 0.0853224787095073 1.05641425493574 1581 0.270935927569034 4 2 2 -6.94860318360049 LTS-005 chr5 35954144 35954191 48 * UGT3A1 0.45 1 NA 0.85 1 NA NA NA NA NA LTS-005 chr5 35954192 36183655 229464 * c(UGT3A1, UGT3A2, SKP2, MIR580, LMBRD2) 0.342765002667841 9 0.235697782010023 1.03289375608669 405 0.344326970155168 4 2 2 -6.75803917161287 LTS-005 chr5 36183656 36248632 64977 * c(NADK2, SKP2) 0.409 1 NA 0.978422079073063 121 0.182785803606298 4 4 0 -5.77348588317899 LTS-005 chr5 36248633 36986297 737665 * c(RANBP3L, NIPBL, NIPBL-AS1, SLC1A3) 0.477673178003309 9 0.0257245019388131 1.02314085926279 295 0.294829087554488 4 2 2 -10.3614982137184 LTS-005 chr5 36986298 37024778 38481 * NIPBL 0 1 NA 1.10273332062766 95 0.30333620063537 4 4 0 -5.76465668600106 LTS-005 chr5 37024779 37305301 280523 * c(NIPBL, C5orf42, NUP155) 0.236900695724785 11 0.24220543496642 1.00414083626074 531 0.255812694615063 4 3 1 -6.76711628121904 LTS-005 chr5 37305302 37310765 5464 * NUP155 0.479 1 NA 1.00617415121616 13 0.644640398664049 4 4 0 -5.76443880512725 LTS-005 chr5 37310766 38934261 1623496 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, GDNF, LIFR, WDR70, OSMR, NUP155) 0.460023050060055 19 0.0255669056920595 1.03394084472358 857 0.281691891897834 4 2 2 -9.51288759358022 LTS-005 chr5 38934262 39105303 171042 * c(RICTOR, OSMR) 0 1 NA 1.01619580049388 305 0.28071157164221 4 4 0 -5.76771376675347 LTS-005 chr5 39105304 41000394 1895091 * c(LOC100506548, MROH2B, DAB2, TTC33, FYB, PRKAA1, PTGER4, RPL37, SNORD72, C7, C9, CARD6) 0.36206009831793 16 0.184199337222839 0.987722261843521 982 0.330054084335878 4 2 2 -6.81059414952405 LTS-005 chr5 41000395 41012845 12451 * MROH2B 0.47 1 NA 1.11916590685776 55 0.266926026651025 4 4 0 -5.76463331250593 LTS-005 chr5 41012846 44310492 3297647 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, MROH2B, LOC153684, NIM1K, FGF10, NNT, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, OXCT1, CCL28, SELENOP, TMEM267, LOC648987, C6, ZNF131) 0.447856772072465 48 0.0798496342868562 1.0131112635171 1754 0.301542926935612 4 2 2 -7.09735797830919 LTS-005 chr5 44310493 45696278 1385786 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.10442487816077 179 0.239063158806806 4 NA NA -5.78009712494875 LTS-005 chr5 49692017 49698180 6164 * EMB 0.472 1 NA 0.939352076616248 69 0.308327243782174 3 3 0 -5.76489934825939 LTS-005 chr5 49698181 59725984 10027804 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, LOC642366, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, PLPP1, HSPB3) 0.453156106096238 112 0.0643846803644863 0.983786644399452 4019 0.273371860763031 4 2 2 -7.7727799837956 LTS-005 chr5 59725985 59725991 7 * PDE4D NA 0 NA 1.259 1 NA NA NA NA NA LTS-005 chr5 59725992 60394941 668950 * c(ERCC8, PART1, PDE4D, DEPDC1B, ELOVL7, NDUFAF2) 0.339716435916734 8 0.0394316768963373 1.47428516808635 281 0.47380620331733 6 4 2 -6.73680121946943 LTS-005 chr5 60394942 60448502 53561 * NDUFAF2 NA 0 NA 1.201 1 NA NA NA NA NA LTS-005 chr5 60448503 61785936 1337434 * c(DIMT1, C5orf64, KIF2A, IPO11, ZSWIM6, SMIM15, NDUFAF2) 0.439875534456041 19 0.108023064463754 0.981680618425749 556 0.27632005620713 4 2 2 -6.93482306159039 LTS-005 chr5 61785937 61802225 16289 * IPO11 0 1 NA 1.42983493634031 19 0.403723263739174 6 6 0 -5.76466784057845 LTS-005 chr5 61802226 64445146 2642921 * c(LRRC70, FAM159B, IPO11-LRRC70, CWC27, ADAMTS6, RNF180, SREK1IP1, HTR1A, RGS7BP, IPO11) 0.299836914424677 11 0.217609324666518 1.07415879676775 647 0.452138029291756 4 3 1 -6.73581361277207 LTS-005 chr5 64445147 64447777 2631 * ADAMTS6 0.48 1 NA 0.975958608401578 57 0.167797588486111 4 4 0 -5.76487196708818 LTS-005 chr5 64447778 66479189 2031412 * c(LOC100303749, ADAMTS6, SREK1, PPWD1, TRIM23, MAST4, CD180, SGTB, ERBIN, NLN, CENPK, TRAPPC13) 0.427503140251789 18 0.151511556107074 1.01736022574141 1646 0.463210094974391 4 2 2 -6.78396182929745 LTS-005 chr5 66479190 66492731 13542 * CD180 NA 0 NA 0.875314027210727 37 0.169141321937564 3 NA NA -5.76490024267956 LTS-005 chr5 67493960 67522224 28265 * PIK3R1 0.207 1 NA 0.651067221799346 9 0.172820073422556 2 2 0 -5.76673700448158 LTS-005 chr5 67522225 69337771 1815547 * c(NA, OCLN, CDK7, MARVELD2, CCDC125, PIK3R1, RAD17, SLC30A5, CENPH, GUSBP3, TAF9, GTF2H2C, SERF1A, CCNB1, MRPS36) 0.132918744851626 21 0.0734315359786957 0.585876349576447 994 0.206753328910967 2 2 0 -6.78069799110742 LTS-005 chr5 69337772 69372302 34531 * c(GUSBP3, SMN1, SMN2, SERF1A) NA 0 NA 0.132 1 NA NA NA NA NA LTS-005 chr5 69372303 70265493 893191 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.243750547185628 61 0.13593002257872 1 NA NA -9.00393206637187 LTS-005 chr5 70265494 70307096 41603 * c(GUSBP9, NAIP) NA 0 NA 0.745 1 NA NA NA NA NA LTS-005 chr5 70307097 70370133 63037 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.780779049835842 46 0.285819580942667 3 NA NA -5.76685918837378 LTS-005 chr5 70370134 88015302 17645169 * c(GUSBP9, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, CKMT2, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, NA NA NA NA NA NA NA NA NA LTS-005 MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.131355193938216 239 0.0546242310445424 0.600009476391359 8690 0.31769812395336 2 2 0 -6.76963951632494 LTS-005 NA NA NA NA LTS-005 chr5 88015303 90459969 2444667 * c(MIR3660, POLR3G, CETN3, LYSMD3, MBLAC2, MEF2C, ADGRV1) 0.105100547969645 23 0.0617743886964026 0.643167755283973 1167 0.232891765701916 2 2 0 -6.87799577490775 LTS-005 chr5 90459970 95226655 4766686 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, NR2F1-AS1, ARRDC3, NR2F1, MCTP1, SPATA9, FAM172A, ADGRV1, SLF1, TTC37) 0.112402741647982 32 0.0732296156817938 0.566466983273086 1689 0.145807270915158 2 2 0 -7.43363806185626 LTS-005 chr5 95226656 95415023 188368 * c(ELL2, MIR583) NA 0 NA 0.588194280581219 85 0.155538974373048 2 NA NA -5.77098211395456 LTS-005 chr5 95415024 95726121 311098 * PCSK1 NA 0 NA 1.423 1 NA NA NA NA NA LTS-005 chr5 95726122 95727175 1054 * PCSK1 0.454 1 NA 1.08585963101062 23 0.263815399886723 4 4 0 -5.76441243736293 LTS-005 chr5 95727176 96369179 642004 * c(LNPEP, PCSK1, ERAP1, ERAP2, CAST) 0.440175692220943 22 0.100792326461855 0.967508603035147 871 0.231011087342485 4 2 2 -6.95065185856617 LTS-005 chr5 96369180 96371142 1963 * character(0) 0.441 1 NA 1.52792164936977 41 0.312424788998069 6 6 0 -5.76441014214728 LTS-005 chr5 96371143 107216405 10845263 * c(LOC100133050, LOC100289230, CHD1, SLCO6A1, LIX1, EFNA5, PPIP5K2, RGMB, FAM174A, SLCO4C1, RGMB-AS1, PAM, GIN1, RIOK2, FBXL17, ST8SIA4, NUDT12, C5orf30, RAB9BP1) 0.431996237349901 51 0.115497230252844 1.01216618708188 1754 0.285662713014702 4 2 2 -7.03935171734366 LTS-005 chr5 107216406 108436096 1219691 * c(LINC01023, FER, FBXL17) 0 1 NA 0.997333827981256 153 0.257973703036857 4 4 0 -5.81648374459944 LTS-005 chr5 108436097 109977936 1541840 * c(LOC100289673, FER, MAN2A1, TMEM232, PJA2) 0.357612665854138 14 0.213570998566218 1.06062495701916 582 0.339783194972698 4 2 2 -6.74697282795608 LTS-005 chr5 109977937 110073871 95935 * c(TMEM232, SLC25A46) 0.413 1 NA 0.829392052383184 11 0.228243052269047 3 3 0 -5.7645785275336 LTS-005 chr5 110073872 118970107 8896236 * c(TMED7-TICAM2, STARD4-AS1, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LVRN, TNFAIP8, DTWD2, APC, HSD17B4, FAM170A, TICAM2, KCNN2, MCC, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, TRIM36, FEM1C, SEMA6A, EPB41L4A, ARL14EPL, YTHDC2, SNORA13, SRP19, LINC00992, REEP5, CAMK4, TSSK1B, TSLP, SLC25A46, ATG12, NREP) 0.438709208099289 144 0.0906416381452617 1.01781025418133 4246 0.300471281142963 4 2 2 -7.04129898865079 LTS-005 chr5 118970108 119799968 829861 * FAM170A 0 1 NA 1.12086732825468 19 0.240455464503007 4 4 0 -5.78390592178945 LTS-005 chr5 119799969 126388435 6588467 * c(LOC100505841, MARCH3, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, SNX24, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, PRR16, PHAX, PPIC, ZNF608, GRAMD3, SNX2, PRDM6, FTMT, SNCAIP) 0.400560508766622 40 0.167172251101855 1.03906536323991 1771 0.305466984292039 4 2 2 -6.76890032623489 LTS-005 chr5 126388436 126394508 6073 * C5orf63 NA 0 NA 1.214 1 NA NA NA NA NA LTS-005 chr5 126394509 126885324 490816 * c(PRRC1, C5orf63, MEGF10) 0.317881082170116 9 0.224127629810437 1.10973741839213 323 0.376365783319474 4 3 1 -6.7484339561827 LTS-005 chr5 126885325 126885825 501 * PRRC1 0.453 1 NA 1.00017772955055 9 0.206339795267687 4 4 0 -5.76444107695906 LTS-005 chr5 126885826 130494699 3608874 * c(KIAA1024L, MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, ISOC1, CTXN3, LINC01184, SLC12A2) 0.429898396207493 32 0.0909937963145946 1.09174474667828 1150 0.286192275143278 4 2 2 -6.86011343057593 LTS-005 chr5 130494700 130494761 62 * character(0) NA 0 NA 0.901 1 NA NA NA NA NA LTS-005 chr5 130494762 134332018 3837257 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, NA NA NA NA NA NA NA NA NA LTS-005 DDX46) 0.418334759853243 122 0.136721058654807 0.968722649857199 4564 0.40370575570497 4 2 2 -6.89258518703118 LTS-005 NA NA NA NA LTS-005 chr5 134332019 135508411 1176393 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, C5orf66-AS2, LOC340074, CATSPER3, IL9, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.431104429564791 38 0.109615184259295 1.05699529033671 893 0.591617046225852 4 2 2 -6.8178309427438 LTS-005 chr5 135508412 135549069 40658 * c(LOC389332, SMAD5, TRPC7) 0 1 NA 1.25257710215331 25 1.1150033064226 5 5 0 -5.76443472077262 LTS-005 chr5 135549070 137424648 1875579 * c(MIR874, HNRNPA0, KLHL3, PKD2L2, NPY6R, FAM13B, TRPC7, SPOCK1, WNT8A, MYOT) 0.32410094581032 12 0.234713155045718 1.05737115149731 818 0.471188017132571 4 3 1 -6.74974269278824 LTS-005 chr5 137424649 137424684 36 * WNT8A NA 0 NA 0.419 1 NA NA NA NA NA LTS-005 chr5 137424685 138979948 1555264 * c(KIF20A, BRD8, CTNNA1, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, HSPA9, TMEM173, PROB1, MZB1, PAIP2, FAM53C, REEP2, KDM3B, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, NME5, CDC23, MATR3, CDC25C, SLC23A1) 0.403621387908835 37 0.146704699204793 0.981801419932461 2117 0.256071244936484 4 2 2 -6.83911150869588 LTS-005 chr5 138979949 140553564 1573616 * c(SRA1, LINC01024, APBB3, SLC35A4, ZMAT2, HBEGF, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, CXXC5, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NA NA NA NA NA NA NA NA NA LTS-005 NRG2, PCDHA9) 0.359522005442847 76 0.134688735381236 1.2672039590228 2872 0.392584420337316 5 3 2 -6.74914964264997 LTS-005 NA NA NA NA LTS-005 chr5 140553565 140558877 5313 * c(PCDHB8, PCDHB7) 0.412233860220693 4 0.0470673276629695 0.454744844809497 66 0.36433754681428 2 1 1 -6.87001655614847 LTS-005 chr5 140558878 140558897 20 * PCDHB8 NA 0 NA 0.472 1 NA NA NA NA NA LTS-005 chr5 140558898 150036700 9477803 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, CDX1, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, FGF1, ABLIM3, HMGXB3, ARHGAP26, PCDHGA12, IL17B, RELL2, NR3C1, NDST1, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PCDH1, PCDHGC3, PCDH12, PDE6A, LARS, PDGFRB, NA NA NA NA NA NA NA NA NA LTS-005 RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, CAMK2A, FBXO38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.365516534811225 255 0.1126550023059 1.30494420601532 9123 1.12607117893042 5 3 2 -6.74188347780456 LTS-005 NA NA NA NA LTS-005 chr5 150036701 154278888 4242188 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, SYNPO, ZNF300P1, SLC36A2, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, GLRA1, GM2A, SLC36A3, GPX3, GRIA1, ANXA6, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, RBM22, NMUR2, SPARC, SAP30L, SMIM3, ZNF300, MYOZ3, CNOT8, HAND1) 0.367306847386805 142 0.103962229873333 1.26758145166473 3463 0.659944617169592 5 3 2 -6.7439684626761 LTS-005 chr5 154278889 154308095 29207 * GEMIN5 0 1 NA 1.25882426114171 80 0.428453266878354 5 5 0 -5.76449848592166 LTS-005 chr5 154308096 160039470 5731375 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, GEMIN5, HAVCR1, CYFIP2, LOC285626, LOC285627, KIF4B, MRPL22, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.279074392559696 79 0.168375727434492 1.24601163376746 2976 0.511089918526693 5 4 1 -6.79229074334689 LTS-005 chr5 160039471 160113210 73740 * ATP10B NA 0 NA 1.25953750173207 96 0.242008347688416 5 NA NA -5.76508344843585 LTS-005 chr5 160113211 160715878 602668 * c(ATP10B, GABRB2, LOC285629) 0.429 1 NA 1.55761006832477 29 0.293219079480563 6 6 0 -5.76609745104028 LTS-005 chr5 160715879 168187973 7472095 * c(MIR103B1, NUDCD2, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, HMMR, FBLL1, MIR103A1, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.361745806119898 33 0.119744290368091 1.36302814303869 1703 0.402232682533108 5 3 2 -6.81170239922932 LTS-005 chr5 168187974 168189493 1520 * SLIT3 NA 0 NA 1.227 1 NA NA NA NA NA LTS-005 chr5 168189494 175477552 7288059 * c(FAM196B, LOC100268168, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, KCNMB1, LCP2, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.341139425449945 130 0.133129185693755 1.29361446821887 3794 0.452743746694406 5 3 2 -6.78164297151303 LTS-005 chr5 175477553 175541200 63648 * FAM153B 0.29 1 NA 0.890388007839442 42 0.72884659807862 3 3 0 -5.7646571454878 LTS-005 chr5 175541201 175665476 124276 * c(LOC100507387, FAM153B, SIMC1, LOC643201) NA 0 NA 1.821 1 NA NA NA NA NA LTS-005 chr5 175665477 177151082 1485606 * c(MIR4281, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.324227500525961 77 0.149502123147802 1.27369835341268 3172 0.480243967211983 5 3 2 -6.81414711278537 LTS-005 chr5 177151083 177151228 146 * FAM153A NA 0 NA 2.502 1 NA NA NA NA NA LTS-005 chr5 177151229 177220694 69466 * FAM153A 0.131086292519073 2 0.171826947828331 1.96937119356733 46 1.10447109339053 10 9 1 -6.73498614012086 LTS-005 chr5 177220695 178538472 1317778 * c(ZNF354B, N4BP3, ZNF454, GRM6, ZNF354C, HNRNPAB, ZNF879, NHP2, PROP1, CLK4, GMCL1P1, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, ZFP2, PHYKPL, COL23A1, ADAMTS2) 0.318576814800576 47 0.124016631482904 1.2816594304011 1438 0.453552132714643 6 4 2 -6.86931201886876 LTS-005 chr5 178538473 178539800 1328 * ADAMTS2 0 1 NA 1.38559414430524 29 1.79223530175234 5 5 0 -5.76441119900227 LTS-005 chr5 178539801 179036964 497164 * c(RUFY1, ADAMTS2) 0.133981001984552 9 0.182820950659382 1.26425204106658 303 0.525233264859346 4 4 0 -6.82930230438837 LTS-005 chr5 179036965 179071925 34961 * c(C5orf60, HNRNPH1, RUFY1) 0.474 1 NA 1.17916721709403 151 0.286994878233829 5 5 0 -5.76674611867594 LTS-005 chr5 179071926 180671029 1599104 * c(MIR1229, MIR4638, HEIH, RACK1, BTNL3, MGAT4B, OR2Y1, BTNL9, TBC1D9B, FLT4, RASGEF1C, OR2V1, OR2V2, C5orf60, LTC4S, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CNOT6, SNORD95, SNORD96A, ZFP62, CBY3, LINC00847, BTNL8, TRIM7, CANX, SQSTM1, TRIM41, SCGB3A1, MAML1, GFPT2) 0.338780663423812 90 0.118434094885977 1.28266984688944 2404 0.518697004820767 5 3 2 -6.80227138107415 LTS-005 chr5 180671030 180688111 17082 * TRIM52 NA 0 NA 1.27271218334658 54 0.3388672997213 5 NA NA -5.76444390089588 LTS-005 chr6 203389 335251 131863 * DUSP22 0.446 1 NA 0.72183659977349 33 0.147506458512942 3 3 0 -5.84645050829969 LTS-005 chr6 335252 391855 56604 * c(IRF4, DUSP22) 0.269560065891577 6 0.19542671260603 0.755592653570381 89 0.380637066447058 4 3 1 -6.76509117303363 LTS-005 chr6 391856 393091 1236 * IRF4 NA 0 NA 0.635 1 NA NA NA NA NA LTS-005 chr6 393092 485620 92529 * c(IRF4, EXOC2) 0.159452304342761 4 0.0380613539783685 0.598216447931671 144 0.160228955352195 2 2 0 -7.14564848762799 LTS-005 chr6 485621 499672 14052 * EXOC2 0.094 1 NA 0.51135163204308 41 0.0974539603620289 2 2 0 -5.79225670483904 LTS-005 chr6 499673 5431960 4932288 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, FARS2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.129776077569072 87 0.0523454152911677 0.578016229844707 2213 0.196441799055263 2 2 0 -6.95826973412933 LTS-005 chr6 5431961 6007334 575374 * c(FARS2, NRN1) NA 0 NA 0.627429640048459 67 0.192278626227736 2 NA NA -5.77123322681039 LTS-005 chr6 6007335 6144356 137022 * c(F13A1, NRN1) NA 0 NA 1.449 1 NA NA NA NA NA LTS-005 chr6 6144357 6144602 246 * F13A1 0.48 1 NA 1.23863639215858 5 0.119320995637817 5 5 0 -5.76443254599158 LTS-005 chr6 6144603 13361088 7216486 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, LOC100506207, ELOVL2-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, SNRNP48, DSP, EDN1, PIP5K1P1, F13A1, PHACTR1, SMIM13, SYCP2L, LINC00518, GCNT2, LY86-AS1, CAGE1, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, SLC35B3, TBC1D7, TMEM14C, ELOVL2, PAK1IP1, RREB1, BLOC1S5, BMP6, SSR1, TFAP2A, HULC, TXNDC5, TMEM14B, RIOK1, ADTRP, GCM2, LY86, EEF1E1) 0.419477995747752 143 0.126609577939592 1.01396967187534 3935 0.36606278427258 4 2 2 -6.85412125350075 LTS-005 chr6 13361089 13361765 677 * character(0) 0.339 1 NA 0.903284248800543 13 0.213214890998705 3 3 0 -5.76445767833706 LTS-005 chr6 13361766 16305810 2944045 * c(RANBP9, MIR4639, RNF182, SIRT5, GMPR, MYLIP, JARID2, NOL7, GFOD1, ATXN1, MCUR1, DTNBP1, CD83) 0.302030502053709 20 0.212273656545408 0.995535289244852 1074 0.264475427251116 4 3 1 -6.86104233629522 LTS-005 chr6 16305811 16306202 392 * ATXN1 0.432 1 NA 0.882064711585406 9 0.0646181089169282 3 3 0 -5.76454628482036 LTS-005 chr6 16306203 25619823 9313621 * c(CAP2, NRSN1, MBOAT1, HDGFL1, E2F3, KDM1B, RBM24, RNF144B, GPLD1, ID4, KAAG1, NHLRC1, STMND1, CASC15, GMNN, FAM8A1, DCDC2, TDP2, CDKAL1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319, NUP153) 0.447377913070386 82 0.0914549365537706 1.0112173399725 3372 0.3987775529784 4 2 2 -7.06849078206249 LTS-005 chr6 25619824 25620060 237 * CARMIL1 0 1 NA 1.44794978001774 7 1.05681308884869 6 6 0 -5.76441049040588 LTS-005 chr6 25620061 25984002 363942 * c(SLC17A4, SLC17A2, TRIM38, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, CARMIL1, SLC17A1) 0.356189071881182 15 0.183465008990296 1.01528854464972 438 0.371604485086869 4 2 2 -6.75709121838202 LTS-005 chr6 25984003 26027135 43133 * c(TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B) 0.471 1 NA 0.986687715783611 65 0.176689131070537 4 4 0 -5.76969049789197 LTS-005 chr6 26027136 28331094 2303959 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, NKAPL, TOB2P1, OR2B6, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HCG11, BTN2A3P, ZSCAN31, ZNF192P1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, NA NA NA NA NA NA NA NA NA LTS-005 ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, PGBD1, HIST1H2AH, HIST1H2BK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2) 0.450136441386117 73 0.0477819836384613 1.00341149614984 2519 0.262976686780587 4 2 2 -7.64513625845 LTS-005 NA NA NA NA LTS-005 chr6 28331095 28334296 3202 * ZKSCAN3 0 1 NA 0.925807278334836 37 0.542533767510271 3 3 0 -5.76447232537389 LTS-005 chr6 28334297 29068512 734216 * c(ZSCAN23, GPX6, ZKSCAN3, ZSCAN12) 0.300391622529711 9 0.225544341538421 1.02859523029144 657 0.324184601442815 4 3 1 -6.74175110370816 LTS-005 chr6 29068513 29068606 94 * character(0) 0.387 1 NA 1.6788356123264 3 1.17416736456095 7 7 0 -5.76441021581704 LTS-005 chr6 29068607 29641295 572689 * character(0) 0.421747375275618 35 0.133316316841317 1.07046173791866 703 0.527420342592636 4 2 2 -6.76758497958074 LTS-005 chr6 29641296 29691090 49795 * character(0) 0.478 1 NA 0.94195152772941 33 0.209567863457018 3 3 0 -5.77338001508503 LTS-005 chr6 29691091 29943035 251945 * character(0) 0.393271470628844 79 0.10884236984533 0.941641309280521 284 3.18814870958577 4 2 2 -6.73392744703471 LTS-005 chr6 29943036 29976789 33754 * character(0) 0.446 1 NA 0.938600579090083 11 0.414408845114448 3 3 0 -5.76587195322832 LTS-005 chr6 29976790 30136929 160140 * character(0) 0.426591187505507 48 0.113147043912332 1.06303144042095 438 0.51812579095305 4 2 2 -6.79628080729778 LTS-005 chr6 30136930 30137212 283 * character(0) 0.463 1 NA 1.01395323049539 5 0.206428680177925 4 4 0 -5.76442111555486 LTS-005 chr6 30137213 30782407 645195 * character(0) 0.458452594199113 38 0.0319920865037281 1.00107823093199 1590 0.224481347853747 4 2 2 -8.72995752800387 LTS-005 chr6 30782408 30879005 96598 * character(0) 0 1 NA 1.05976797742759 175 0.264415957451528 4 4 0 -5.76446855814827 LTS-005 chr6 30879006 31132021 253016 * character(0) 0.386024422323952 3 0.268835141552092 1.04086419492035 800 1.87898081563035 4 2 2 -6.73316957882129 LTS-005 chr6 31132022 31239016 106995 * character(0) 0.275 1 NA 2.42361675337401 117 49.8763644531058 10 10 0 -5.76441013624686 LTS-005 chr6 31239017 31239049 33 * character(0) 0.226 1 NA 0.442 1 NA NA NA NA NA LTS-005 chr6 31239050 31324895 85846 * character(0) 0.375355981030807 13 0.152167754931936 0.733207010290136 75 0.287618522377149 3 2 1 -6.7586820736133 LTS-005 chr6 31324896 31324955 60 * character(0) NA 0 NA 0.987 1 NA NA NA NA NA LTS-005 chr6 31324956 31324996 41 * character(0) 0.499 1 NA 0.567676315495716 2 0.499924494298889 2 2 0 -5.76441064685556 LTS-005 chr6 31324997 32134520 809524 * character(0) 0.432096918824048 110 0.114585202173452 1.02959318630267 3716 0.301832445318071 4 2 2 -6.82160803358135 LTS-005 chr6 32134521 32136053 1533 * character(0) 0 1 NA 1.00472317605711 29 0.27543040657668 4 4 0 -5.76445631086001 LTS-005 chr6 32136054 32184944 48891 * character(0) 0.261732466363354 10 0.236233053478034 1.08867741585766 430 0.627965693275898 4 3 1 -6.73915156091234 LTS-005 chr6 32184945 32190390 5446 * character(0) 0.45 1 NA 1.15527882240682 39 0.132980684116823 4 4 0 -5.76553093461637 LTS-005 chr6 32190391 32333425 143035 * character(0) 0.45511913567263 28 0.0924254883647952 1.03292900518523 252 0.351967656741202 4 2 2 -7.02061152604201 LTS-005 chr6 32333426 32333698 273 * character(0) 0 1 NA 1.65135333496683 3 1.93701454133244 7 7 0 -5.76441029802764 LTS-005 chr6 32333699 32427927 94229 * character(0) 0.408910657845991 6 0.190952350077186 1.06413723062861 149 0.319613233016705 4 2 2 -6.73912993434722 LTS-005 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 2.81 1 NA NA NA NA NA LTS-005 chr6 32485401 32497964 12564 * HLA-DRB5 0.175501251395416 5 0.141211897515755 2.75160178938345 51 2.76737721189959 7 6 1 -6.73323109638257 LTS-005 chr6 32497965 32610769 112805 * c(HLA-DQA1, HLA-DRB5) 0.341413975221302 82 0.0805549714958735 1.35424641889515 187 1.77791251687437 6 4 2 -6.73334757661814 LTS-005 chr6 32610770 32610819 50 * HLA-DQA1 0.275 1 NA 2.241 1 NA NA NA NA NA LTS-005 chr6 32610820 32628699 17880 * HLA-DQA1 0.226274374997218 39 0.101136577396357 1.49483776159584 71 0.674300826357613 5 4 1 -6.73999583660009 LTS-005 chr6 32628700 32629716 1017 * character(0) 0.484 1 NA 1.06887509356919 17 0.297013863807933 4 4 0 -5.76441013483211 LTS-005 chr6 32629717 32725764 96048 * character(0) 0.291395265822896 24 0.139852795280703 1.41642197249644 105 1.06074717195971 4 3 1 -6.73813647883556 LTS-005 chr6 32725765 32726623 859 * character(0) NA 0 NA 0.85 1 NA NA NA NA NA LTS-005 chr6 32726624 32727004 381 * character(0) 0.338436342673113 4 0.096889541919308 1.20035039161744 10 0.619496892647574 9 6 3 -6.73328878728433 LTS-005 chr6 32727005 32729412 2408 * character(0) 0.459 1 NA 1.08195774032332 2 0.620132647100602 4 4 0 -5.76441070530766 LTS-005 chr6 32729413 33035512 306100 * character(0) 0.43951737811639 47 0.122155721730611 0.962447491066098 735 0.964498918004351 4 2 2 -6.83350392878653 LTS-005 chr6 33035513 33054760 19248 * character(0) 0.416695412506886 23 0.128663915539888 2.10588245188748 145 21.7823496525581 19 10 9 -6.75880876773312 LTS-005 chr6 33054761 35715303 2660543 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.425969496861336 97 0.116950677256068 1.03619547555874 4294 0.802493942185548 4 2 2 -6.79266895172038 LTS-005 chr6 35715304 35745685 30382 * c(ARMC12, CLPSL2) 0 1 NA 0.988201185746779 27 0.22254252130587 4 4 0 -5.7666666774529 LTS-005 chr6 35745686 35965610 219925 * c(SLC26A8, CLPS, LHFPL5, CLPSL1, CLPSL2, SRPK1) 0.293769011539508 9 0.222152600204854 0.985857516861505 321 0.463162016243235 4 3 1 -6.73785167397419 LTS-005 chr6 35965611 35980121 14511 * SLC26A8 0.435 1 NA 1.0921466173825 9 0.508992386976465 4 4 0 -5.76442595863305 LTS-005 chr6 35980122 38670837 2690716 * c(MIR3925, MIR4462, CDKN1A, STK38, BTBD9, SLC26A8, MAPK14, CCDC167, TMEM217, FGD2, PI16, C6orf89, KCTD20, PXT1, CMTR1, MTCH1, MDGA1, BRPF3, GLO1, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, PIM1, TBC1D22B, MAPK13, CPNE5, ZFAND3, SRSF3, RNF8) 0.432657771064209 101 0.113746661358903 1.01893604412314 2833 0.310225815623314 4 2 2 -6.85545818818547 LTS-005 chr6 38670838 38743685 72848 * c(DNAH8, GLO1) 0 1 NA 0.99575050730647 57 0.59049170284418 4 4 0 -5.76503671042466 LTS-005 chr6 38743686 39285619 541934 * c(LOC100131047, DNAH8, GLP1R, SAYSD1, KCNK16, KCNK5, KCNK17) 0.277877761521121 10 0.251385936139811 1.0275021343732 710 0.663871866043686 4 3 1 -6.73472964225164 LTS-005 chr6 39285620 39297967 12348 * KCNK16 0.47 1 NA 1.19602240034961 25 0.293511850981637 5 5 0 -5.76498266354432 LTS-005 chr6 39297968 43252845 3954878 * c(TOMM6, MIR4641, DNPH1, CNPY3, FRS3, APOBEC2, FOXP4, KLHDC3, TAF8, PTCRA, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, CUL9, UBR2, DAAM2, GLTSCR1L, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, MDFI, MEA1, MOCS1, C6orf226, ATP6V0CP3, NFYA, MRPL2, PEX6, PGC, TREM2, TREM1, MRPS10, PPP2R5D, TRERF1, LRFN2, PTK7, PRPH2, C6orf132, SRF, TBCC, BYSL, TDRG1, TFEB, NA NA NA NA NA NA NA NA NA LTS-005 TREML2, TTBK1, RRP36, CCND3, KLC4, NCR2, MED20, CUL7) 0.433503458835171 133 0.0907688583487366 1.03895066994198 4692 0.314860875828219 4 2 2 -6.88885115739023 LTS-005 NA NA NA NA LTS-005 chr6 43252846 43253983 1138 * TTBK1 0 1 NA 1.04687588180632 25 1.14539703014573 4 4 0 -5.76441035606124 LTS-005 chr6 43253984 43417963 163980 * c(SLC22A7, ZNF318, CRIP3, TTBK1, ABCC10) 0.324351258018316 10 0.227149877100268 1.02437864194763 502 0.336855802324953 4 3 1 -6.75203537731021 LTS-005 chr6 43417964 43418691 728 * c(DLK2, ABCC10) 0.471 1 NA 1.05627850437508 17 0.312319359555153 4 4 0 -5.7644107460939 LTS-005 chr6 43418692 44227103 808412 * c(LINC01512, MIR4647, CAPN11, SLC29A1, C6orf223, RSPH9, LRRC73, YIPF3, HSP90AB1, SLC35B2, NFKBIE, POLH, GTPBP2, MRPS18A, TMEM63B, XPO5, MRPL14, DLK2, VEGFA, TJAP1, POLR1C, MAD2L1BP) 0.441971259090919 44 0.123014727370773 1.04492209800449 1479 0.266194096660042 4 2 2 -6.84306593865996 LTS-005 chr6 44227104 44227715 612 * NFKBIE NA 0 NA 1.444 1 NA NA NA NA NA LTS-005 chr6 44227716 50811454 6583739 * c(ANKRD66, MIR4642, RCAN2, CRISP3, C6orf141, CRISP1, TCTE1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, TMEM151B, PTCHD4, MUT, NFKBIE, CYP39A1, PGK2, CLIC5, CENPQ, AARS2, ENPP5, RHAG, MIR586, TFAP2B, CRISP2, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.411860814304984 88 0.155844123001097 1.08904553132349 3176 0.311813901916655 4 2 2 -6.75958970766836 LTS-005 chr6 50811455 51273810 462356 * TFAP2B NA 0 NA 0.947 1 NA NA NA NA NA LTS-005 chr6 51273811 52147692 873882 * c(IL17F, IL17A, MIR206, MCM3, MIR133B, PKHD1) 0.415973725611403 13 0.129352331409316 1.00958252393481 699 0.274023705856296 4 2 2 -6.78028081131126 LTS-005 chr6 52147693 52269345 121653 * c(MCM3, PAQR8) 0 1 NA 0.994080984514894 43 0.775843840248685 4 4 0 -5.76504536826174 LTS-005 chr6 52269346 52367117 97772 * c(EFHC1, PAQR8, TRAM2) 0.347244067641605 9 0.220839559660653 0.944540424446988 245 0.26798748135675 3 2 1 -6.7445831829974 LTS-005 chr6 52367118 52367677 560 * c(EFHC1, TRAM2) 0.49 1 NA 1.12599610166737 11 0.19263295290644 4 4 0 -5.76443478500852 LTS-005 chr6 52367678 53409942 1042265 * c(MIR5685, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, TRAM2-AS1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, TRAM2) 0.438814296116306 20 0.105649009261302 0.973500155115105 857 0.261705344429616 4 2 2 -6.93861365621909 LTS-005 chr6 53409943 53516308 106366 * KLHL31 NA 0 NA 1.083 1 NA NA NA NA NA LTS-005 chr6 53516309 57398264 3881956 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.434104538027971 89 0.109322512066524 1.06553828475008 2532 0.248499606043043 4 2 2 -6.83091251404718 LTS-005 chr6 57398265 57398270 6 * PRIM2 0.302 1 NA 1.955 1 NA NA NA NA NA LTS-005 chr6 57398271 57512678 114408 * PRIM2 0.328949730815956 25 0.0564487378069696 1.30591622280901 60 0.972835657148323 6 4 2 -6.7654733711554 LTS-005 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.02756588799929 19 0.199099742848501 4 NA NA -5.7860887173162 LTS-005 chr6 62390154 62887099 496946 * KHDRBS2 0.47 1 NA 1.04714268268386 63 0.258794938660898 4 4 0 -5.7662586296311 LTS-005 chr6 62887100 73952250 11065151 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.43407167888804 66 0.126000699298759 1.05132254578995 2681 0.331446977657365 4 2 2 -6.82285394260346 LTS-005 chr6 73952251 75822721 1870471 * c(MB21D1, COL12A1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.434829801806184 35 0.104784115801822 0.942600009926346 956 0.257159035425503 4 2 2 -7.09876538025258 LTS-005 chr6 75822722 75822905 184 * COL12A1 NA 0 NA 1.996 1 NA NA NA NA NA LTS-005 chr6 75822906 86200816 10377911 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.412999407575798 66 0.125287001057702 1.06219766044038 3753 0.311807215502494 4 2 2 -6.75616070054929 LTS-005 chr6 86200817 91296539 5095723 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.420096727870721 72 0.132961311986356 0.981700649057481 3575 0.260229802571757 4 2 2 -7.07335836326032 LTS-005 chr6 91296540 100014918 8718379 * c(TSTD3, MIR2113, MIR4643, FUT9, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, NDUFAF4, COQ3, POU3F2, TSG1, MAP3K7, MANEA, GPR63, FAXC, USP45, CCNC, FHL5) 0.45779257229798 41 0.0303601752943299 1.07211558578498 1649 0.307693893663972 4 2 2 -8.82374004850291 LTS-005 chr6 100014919 100061197 46279 * c(TSTD3, PRDM13, CCNC) 0 1 NA 0.999326333582851 41 0.758508188453638 4 4 0 -5.76462754509913 LTS-005 chr6 100061198 100833232 772035 * c(PRDM13, MCHR2-AS1, MCHR2) 0 1 NA 1.0513826030698 106 0.320291836404248 4 4 0 -5.76561534149745 LTS-005 chr6 100833233 100833236 4 * character(0) NA 0 NA 0.649 1 NA NA NA NA NA LTS-005 chr6 100833237 136554528 35721292 * c(LIN28B-AS1, TRAPPC3L, LINC00271, LOC100287632, LOC100422737, MIR3662, SMLR1, LINC01013, MIR5695, LOC100996634, TRDN, TRAF3IP2, HBS1L, SMPDL3A, ASCC3, BVES, SEC63, GTF3C6, MTFR2, TMEM200A, NUS1, SLC18B1, SLC16A10, COL10A1, CLVS2, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, BVES-AS1, AIM1, EPB41L2, EYA4, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, NA NA NA NA NA NA NA NA NA LTS-005 GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, LACE1, FYN, TMEM244, FAM26E, MCM9, SCML4, ASF1A, MOXD1, AMD1, GJA1, PDE7B, SESN1, GPR6, LINC00326, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, DSE, HDAC2, TAAR6, HSF2, RSPH4A, C6orf58, ARG1, KPNA5, HMGA1P7, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LIN28B, LAMA2, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RFPL4B, MYB, HDDC2, TUBE1, C6orf203, CDC40, RWDD1, ENPP1, ENPP3, PLN, AHI1, SOBP, QRSL1, VNN3, PREP, PKIB, ECHDC1, PDSS2, GOPC, SERINC1, HACE1, BEND3, PTPRK, SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS12, PRDM1, POPDC3, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, ALDH8A1, MICAL1, SIM1, SMPD2, MIR548B, TCF21, NR2E1, TPD52L1, TSPYL1, TPI1P3, METTL24, OR2A4, RNF217-AS1, FAM184A, RNF146, TAAR8, ARMC2, RPF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 STX7, L3MBTL3, RTN4IP1, RSPO3, DDO, SLC22A16, SNX3, CD164, WISP3, VNN2, VNN1, WASF1, TAAR5, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, ATG5, TBPL1, KIAA0408, ZBTB24, FIG4) 0.124248994914813 347 0.0579494520668889 0.603789727477934 16075 0.218029671126602 2 2 0 -6.79181499502247 LTS-005 NA NA NA NA LTS-005 chr6 136554529 136597262 42734 * c(MTFR2, BCLAF1) 0.441 1 NA 0.582665794611743 184 0.132046304973533 2 2 0 -5.76765266224296 LTS-005 chr6 136597263 136963649 366387 * c(MAP3K5, MAP7, BCLAF1) 0.315490960093605 9 0.18004868168853 0.642623538376644 282 0.162544533506693 2 1 1 -6.85470609240948 LTS-005 chr6 136963650 137113137 149488 * MAP3K5 0.164 1 NA 0.563379822684088 57 0.106526403706859 2 2 0 -5.81536037764061 LTS-005 chr6 137113138 149983426 12870289 * c(UST-AS1, LOC100130476, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, RAB32, KATNA1, GINM1, IL22RA2, ADAT2, STXBP5, LOC153910, ZC2HC1B, OLIG3, TXLNB, TAB2, SASH1, HEBP2, FUCA2, SHPRH, CCDC28A, PHACTR2-AS1, GRM1, HIVEP2, SLC35D3, ZC3H12D, IFNGR1, ECT2L, SUMO4, SAMD5, MAP3K5, FLJ46906, NMBR, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, HYMAI, ADGRG6, ARFGEF3, NA NA NA NA NA NA NA NA NA LTS-005 NHSL1, ABRACL, PBOV1, PERP, LINC01625, RPS18P9, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, PHACTR2) 0.12402965679953 109 0.065526899436637 0.602931139430813 5547 0.178272943910607 2 2 0 -6.77354541872163 LTS-005 NA NA NA NA LTS-005 chr6 149983427 149997263 13837 * LATS1 NA 0 NA 1.289 1 NA NA NA NA NA LTS-005 chr6 149997264 151942355 1945092 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, NUP43, RAET1G, IYD, PCMT1, RMND1, PLEKHG1, ZBTB2, RAET1K, ULBP3, ARMT1, CCDC170, ULBP2, ULBP1, PPP1R14C, LRP11, LATS1, AKAP12) 0.0783893299602209 59 0.0432814852643269 1.02755546235442 1666 0.403741920077894 4 4 0 -6.75312928450471 LTS-005 chr6 151942356 152128679 186324 * ESR1 NA 0 NA 0.621 1 NA NA NA NA NA LTS-005 chr6 152128680 152129077 398 * ESR1 0.105 1 NA 0.673246597076963 7 0.0339579571992023 2 2 0 -5.76637424992035 LTS-005 chr6 152129078 152130314 1237 * ESR1 0.162 1 NA 0.648997609036135 13 0.1888515221964 2 2 0 -5.76448711236328 LTS-005 chr6 152130315 154476227 2345913 * c(ESR1, SYNE1, IPCEF1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.118578037711641 41 0.0462215106717693 0.640733511155172 1611 0.226478741782854 2 2 0 -6.81464841600276 LTS-005 chr6 154476228 160212193 5735966 * c(LOC100129518, C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, ACAT2, GTF2H5, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.133911619561272 79 0.0564983103440267 0.578605161339923 3273 0.183125719442548 2 2 0 -7.02738851267135 LTS-005 chr6 160212194 170890378 10678185 * c(HGC6.3, AIRN, LOC100289495, MIR1913, MIR3939, CAHM, MIR4644, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, PNLDC1, LOC154449, DACT2, C6orf118, WDR27, LINC01558, DLL1, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, KIF25, C6orf120, DKFZp451B082, TCP10L2, LINC00242, LPA, MAS1, MAP3K4, AFDN, LINC00602, PARK2, PDCD2, MPC1, PLG, UNC93A, PHF10, ERMARD, PSMB1, AGPAT4, RPS6KA2, SMOC2, AFDN-AS1, SLC22A1, SLC22A3, NA NA NA NA NA NA NA NA NA LTS-005 SLC22A2, T, TBP, TCP10, TCTE3, THBS2, LOC729603, FRMD1, AGPAT4-IT1, LINC00574, LPAL2, TTLL2, FAM120B, RNASET2, LINC00473, QKI) 0.138079346347376 148 0.0761181341928851 0.619201971372377 5207 0.289615687599443 2 2 0 -6.76076031423143 LTS-005 NA NA NA NA LTS-005 chr6 170890379 170893599 3221 * PDCD2 NA 0 NA 0.576140660699179 45 0.134959054770869 2 NA NA -5.76476981087982 LTS-005 chr7 193047 296739 103693 * FAM20C 0.244 1 NA 0.619110425048966 85 0.114035724659422 2 2 0 -5.7653078344734 LTS-005 chr7 296740 5926027 5629288 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-005 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.123749466057473 205 0.0594492163588511 0.614689528501761 5348 0.22970778299943 2 2 0 -6.73735098242072 LTS-005 NA NA NA NA LTS-005 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.347 1 NA NA NA NA NA LTS-005 chr7 5937950 5965312 27363 * CCZ1 0.079 1 NA 0.377842115877336 61 0.290327050367105 1 1 0 -5.76443002101488 LTS-005 chr7 5965313 5998720 33408 * c(RSPH10B, CCZ1) NA 0 NA 0.119331036952975 43 0.102066070929543 0 NA NA -5.87900022529876 LTS-005 chr7 5998721 6004121 5401 * RSPH10B NA 0 NA 0.409 1 NA NA NA NA NA LTS-005 chr7 6004122 6803726 799605 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.143823092703425 40 0.063168395213478 0.573180053905936 1331 0.17230770078462 2 2 0 -6.84046385004925 LTS-005 chr7 6803727 6805326 1600 * RSPH10B2 NA 0 NA 1.136 1 NA NA NA NA NA LTS-005 chr7 6805327 6863802 58476 * c(CCZ1B, RSPH10B2) 0.12582517649868 2 0.0346482322781408 1.13405082073823 91 0.527562606970494 2 2 0 -6.78142636859146 LTS-005 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.63 1 NA NA NA NA NA LTS-005 chr7 6864270 30876378 24012109 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, NA NA NA NA NA NA NA NA NA LTS-005 DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.130890761445471 265 0.0618819439392956 0.610588259102139 9919 0.21359843679268 2 2 0 -6.73564485233469 LTS-005 NA NA NA NA LTS-005 chr7 30876379 32338942 1462564 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.110855411477495 30 0.0590997695310285 0.694885811323192 1005 0.28288453618652 2 2 0 -6.95403108064567 LTS-005 chr7 32338943 32524917 185975 * LOC100130673 NA 0 NA 0.521 1 NA NA NA NA NA LTS-005 chr7 32524918 41726449 9201532 * c(DPY19L1P1, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, FKBP9, MPLKIP, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.149059156882998 108 0.0794346124161614 0.602666829281332 3650 0.279826438990554 2 2 0 -6.7920292909648 LTS-005 chr7 41726450 42018394 291945 * c(GLI3, INHBA-AS1, INHBA) 0 2 0 0.720104151732568 239 0.232939401208901 0 0 0 -Inf LTS-005 chr7 42018395 42063048 44654 * GLI3 NA 0 NA 0.661 1 NA NA NA NA NA LTS-005 chr7 42063049 47568686 5505638 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, GLI3, POLM, SPDYE1, SNHG15, DBNL, NPC1L1, IGFBP1, IGFBP3, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, C7orf25, CAMK2B, CCM2, ZMIZ2, POLR2J4, TBRG4, STK17A, H2AFV) 0.117796253581331 81 0.0646519098282831 0.621741478764358 3912 0.441024612198873 2 2 0 -6.75013321593926 LTS-005 chr7 47568687 47568718 32 * TNS3 0.138 1 NA 1.055 1 NA NA NA NA NA LTS-005 chr7 47568719 47596775 28057 * TNS3 0.476 1 NA 0.98096429578411 15 0.240697458787306 4 4 0 -5.76654160648472 LTS-005 chr7 47596776 48321043 724268 * c(C7orf57, ABCA13, PKD1L1, SUN3, HUS1, C7orf65, TNS3, UPP1, C7orf69, LINC00525) 0.42719796658711 28 0.123260746550602 0.996150305861788 897 0.291640127127075 4 2 2 -6.81330493876765 LTS-005 chr7 48321044 48349549 28506 * ABCA13 0 1 NA 1.06491719743469 27 1.03068238535796 4 4 0 -5.76441033732758 LTS-005 chr7 48349550 50680575 2331026 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, ABCA13, DDC, CDC14C, GRB10, VWC2, FIGNL1) 0.320403417548486 31 0.202181176069854 1.01461501753604 899 0.437776915265792 4 3 1 -6.77042077727315 LTS-005 chr7 50680576 51084304 403729 * c(COBL, GRB10) 0.467 1 NA 0.918417041036554 63 0.232716649414026 3 3 0 -5.80011625744656 LTS-005 chr7 51084305 55886950 4802646 * c(EGFR-AS1, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, HPVC1, SEPT14, FKBP9P1, LINC01446, LANCL2, VOPP1) 0.442934988874096 28 0.0960101956666982 1.04695419062486 1184 0.280083740336356 4 2 2 -6.92777439154741 LTS-005 chr7 55886951 55902149 15199 * SEPT14 NA 0 NA 1.268 1 NA NA NA NA NA LTS-005 chr7 55902150 57532487 1630338 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.290212277000377 26 0.101342321632407 1.36690688885426 592 0.512728515217168 5 4 1 -6.9052451437199 LTS-005 chr7 57532488 57533232 745 * ZNF716 NA 0 NA 1.87768819789469 13 0.585552993069208 8 NA NA -5.76441413671937 LTS-005 chr7 62758725 63023537 264813 * ZNF733P 0.353 1 NA 1.35626439206571 7 1.9323903529542 5 5 0 -5.76449300912868 LTS-005 chr7 63023538 64438667 1415130 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.457933260252544 27 0.0384097343431023 0.938138767166983 529 0.273551530079349 4 2 2 -8.38888729758638 LTS-005 chr7 64438668 64451426 12759 * c(ERV3-1, ZNF117) 0.468 1 NA 0.969821787036338 27 0.299687120794956 4 4 0 -5.76521342229695 LTS-005 chr7 64451427 64639874 188448 * c(ERV3-1, CCT6P3) 0.165471089776739 8 0.247083993815868 1.14956981928988 73 1.13567662563835 7 6 1 -6.7497596552877 LTS-005 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.692 1 NA NA NA NA NA LTS-005 chr7 64643340 64863392 220053 * ZNF92 0.455 1 NA 0.60003344782363 27 0.125496654363414 2 2 0 -5.76700556738581 LTS-005 chr7 64863393 64864268 876 * ZNF92 0.471 1 NA 0.49467728438538 13 0.0970469090909266 2 2 0 -5.76688333511761 LTS-005 chr7 64864269 65157832 293564 * c(ZNF92, LOC441242, INTS4P2) 0.483735170816504 4 0.0185180092522568 0.604007457494951 57 0.211353720959458 2 1 1 -12.1884039918482 LTS-005 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.807 1 NA NA NA NA NA LTS-005 chr7 65159973 72640024 7480052 * c(MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, VKORC1L1, KCTD7, SBDSP1, NSUN5P2, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, GTF2IRD1P1, CALN1, TPST1, FKBP6, POM121) 0.407549444742505 48 0.125615250053882 1.03775185878318 1731 0.896193056603982 4 2 2 -6.74999268994995 LTS-005 chr7 72640025 72643797 3773 * c(NCF1B, FKBP6) NA 0 NA 0.581 1 NA NA NA NA NA LTS-005 chr7 72643798 72712179 68382 * c(GTF2IRD2P1, NCF1B, FKBP6) NA 0 NA 0.57992999940139 41 0.395073248842818 2 NA NA -5.76511203965573 LTS-005 chr7 72712180 72712249 70 * FKBP6 NA 0 NA 1.123 1 NA NA NA NA NA LTS-005 chr7 72712250 75401418 2689169 * c(POM121C, MIR4284, CCL26, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, VPS37D, NSUN5P1, ABHD11-AS1, ELN, TBL2, GTF2I, GTF2IP1, HIP1, TRIM73, NA, GTF2IRD2B, LIMK1, STAG3L2, SPDYE5, MLXIPL, PMS2P5, PMS2P3, STAG3L1, NSUN5, RFC2, NCF1, NCF1C, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, RCC1L, FZD9, ABHD11, GTF2IRD2, DNAJC30, FKBP6, BAZ1B, BCL7B, GTF2IRD1) 0.38381246324881 50 0.16331338223283 1.01185337073991 2392 0.294657447433482 4 2 2 -6.78881799251905 LTS-005 chr7 75401419 75442716 41298 * c(CCL26, CCL24) 0 1 NA 1.18256916635694 17 0.641048543633099 5 5 0 -5.76493060001115 LTS-005 chr7 75442717 75915281 472565 * c(MIR4651, SRRM3, MDH2, STYXL1, POR, RHBDD2, CCL24, SNORA14A, TMEM120A) 0.22107648817328 10 0.243449949225252 1.04910548461786 428 0.591775789004079 5 4 1 -6.77192747334028 LTS-005 chr7 75915282 75916077 796 * SRRM3 0.447 1 NA 1.10803553075588 15 0.155881823369958 4 4 0 -5.76443577874325 LTS-005 chr7 75916078 86506499 10590422 * c(PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, KIAA1324L, SEMA3D, POMZP3, PCLO, GNAI1, GRM3, HGF, HSPB1, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, CACNA2D1, UPK3B, TMEM60, CD36, SEMA3E, MAGI2) 0.410343123568836 65 0.118132204704989 0.990874583982547 3308 0.286590854079718 4 2 2 -7.16395195414239 LTS-005 chr7 86506500 91502731 4996232 * c(LOC101409256, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, STEAP2, STEAP1, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12, DMTF1) 0.391646824053108 54 0.120661466003266 0.911306898075994 2690 0.254742077021827 3 2 1 -7.09191747238985 LTS-005 chr7 91502732 91502797 66 * MTERF1 NA 0 NA 0.765 1 NA NA NA NA NA LTS-005 chr7 91502798 94139496 2636699 * c(MIR4652, AKAP9, CDK6, BET1, COL1A2, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, CASD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.384352791827975 38 0.122876153404113 0.842090136127919 2542 0.243515336672702 3 2 1 -6.77481163453816 LTS-005 chr7 94139497 97845431 3705935 * c(LOC100506136, SLC25A13, BHLHA15, DLX5, DLX6, DYNC1I1, LMTK2, PEG10, TECPR1, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, SDHAF3, CASD1, TAC1, MIR591, SHFM1, SGCE) 0.365243183269313 54 0.116891596588036 0.898483152298161 1853 0.270338188214082 3 2 1 -6.87702307801552 LTS-005 chr7 97845432 97846599 1168 * TECPR1 0 1 NA 0.993641775123833 21 1.03766794395161 4 4 0 -5.7644135833055 LTS-005 chr7 97846600 98956102 1109503 * c(MIR3609, ARPC1A, TMEM130, BRI3, TECPR1, KPNA7, NPTX2, BAIAP2L1, SMURF1, TRRAP, MYH16) 0.252556825492839 13 0.193038258463884 0.907148283263637 1166 0.341018892631571 4 3 1 -6.90046492865875 LTS-005 chr7 98956103 98957243 1141 * ARPC1A NA 0 NA 1.224 1 NA NA NA NA NA LTS-005 chr7 98957244 99217574 260331 * c(GS1-259H13.2, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, ZSCAN25, FAM200A, ZKSCAN5, PTCD1, ZNF789, ZNF655, ZNF394, BUD31, ATP5J2) 0.339294165491406 27 0.216501659718739 1.01980458505187 823 0.358225544440869 4 2 2 -6.76799895235857 LTS-005 chr7 99217575 99228074 10500 * ZSCAN25 0.489 1 NA 0.999094909935886 49 0.161883682101107 4 4 0 -5.76550031175186 LTS-005 chr7 99228075 100549499 1321425 * c(PCOLCE-AS1, SAP25, MIR4658, CYP3A7-CYP3A51P, POP7, STAG3, COPS6, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, SLC12A9, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, TRIP6, ZAN, NA NA NA NA NA NA NA NA NA LTS-005 ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRIM4, AP4M1) 0.410702726637958 69 0.126785792795967 1.03089270196981 3747 1.89409956169572 4 2 2 -6.74979436698533 LTS-005 NA NA NA NA LTS-005 chr7 100549500 100549573 74 * character(0) 0.254 1 NA 3.302 1 NA NA NA NA NA LTS-005 chr7 100549574 100550184 611 * character(0) 0.374874342560408 20 0.052100005051015 1.79833246473684 32 0.725678433961027 15 9 6 -6.7335962463436 LTS-005 chr7 100550185 100550203 19 * character(0) 0.082 1 NA 1.33272703720981 3 0.0964382358472683 5 5 0 -5.76441095791974 LTS-005 chr7 100550204 100550726 523 * character(0) 0.249780212059552 13 0.10794353937271 1.36795701434828 23 0.374451092338318 13 10 3 -6.73561228867007 LTS-005 chr7 100550727 100550745 19 * character(0) 0.106 1 NA 0.488 1 NA NA NA NA NA LTS-005 chr7 100550746 100551253 508 * character(0) 0.278401636560365 15 0.105554995821406 0.495364935676359 45 0.351944572082284 4 3 1 -6.73723700955865 LTS-005 chr7 100551254 100551263 10 * character(0) 0.103 1 NA 1.087 1 NA NA NA NA NA LTS-005 chr7 100551264 100551566 303 * character(0) 0.277351563075534 18 0.0761689728058653 1.72524119426621 24 0.562791077666881 15 11 4 -6.73335627375063 LTS-005 chr7 100551567 100551578 12 * character(0) 0.385 1 NA 1.843 1 NA NA NA NA NA LTS-005 chr7 100551579 100553077 1499 * character(0) 0.351377976881238 43 0.0873819089208088 1.6231378788267 83 0.94284983919875 3 2 1 -6.73349022078644 LTS-005 chr7 100553078 100553085 8 * character(0) NA 0 NA 1.216 1 NA NA NA NA NA LTS-005 chr7 100553086 102178414 1625329 * c(RASA4B, LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MUC12, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.384094259177604 82 0.151713931902754 1.0624391139391 2156 0.433894204782093 4 2 2 -6.73401690642958 LTS-005 chr7 102178415 102180431 2017 * c(RASA4B, POLR2J3) NA 0 NA 1.487 1 NA NA NA NA NA LTS-005 chr7 102180432 102401896 221465 * c(RASA4B, SPDYE2B, RASA4, FAM185A, POLR2J2, POLR2J3) 0.359871086165207 2 0.0098994949366116 2.04898025535159 59 3.66333139050787 19 12 7 -6.75512843400981 LTS-005 chr7 102401897 102412817 10921 * FAM185A NA 0 NA 0.585 1 NA NA NA NA NA LTS-005 chr7 102412818 103389905 977088 * c(RPL19P12, LRRC17, FAM185A, FBXL13, NAPEPLD, DNAJC2, DPY19L2P2, SLC26A5, RELN, PSMC2, ARMC10, PMPCB) 0.327421654856479 27 0.194259350242646 1.03722838954948 1170 0.44066375788964 4 3 1 -6.7634644990353 LTS-005 chr7 103389906 103838148 448243 * c(ORC5, RELN) 0.451 1 NA 1.03890263369183 89 0.165721168285701 4 4 0 -5.77223187737002 LTS-005 chr7 103838149 105653455 1815307 * c(EFCAB10, KMT2E-AS1, LINC01004, ATXN7L1, CDHR3, LHFPL3, ORC5, PUS7, KMT2E, RINT1, LHFPL3-AS1, SRPK2, LHFPL3-AS2) 0.397329165650588 9 0.154680135907764 1.01259693906803 908 0.273478259661526 4 2 2 -6.77655823416721 LTS-005 chr7 105653456 105655550 2095 * CDHR3 NA 0 NA 0.652 1 NA NA NA NA NA LTS-005 chr7 105655551 114620116 8964566 * c(MIR3666, NAMPT, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, CDHR3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, IFRD1, LAMB1, LINC00998, DNAJB9, EIF3IP1, NRCAM, PNPLA8, SLC26A4, PIK3CG, GPR85, LRRN3, PPP1R3A, PRKAR2B, BCAP29, TMEM168, SYPL1, CBLL1, IMMP2L, FOXP2, DOCK4) 0.408078148201039 76 0.108998876543381 0.883758642278095 3778 0.274832219723941 3 2 1 -7.06905208902098 LTS-005 chr7 114620117 114620215 99 * MDFIC NA 0 NA 1.01 1 NA NA NA NA NA LTS-005 chr7 114620216 127222521 12602306 * c(AASS, FAM3C, CFTR, ASZ1, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, TFEC, HYAL4, TSPAN12, POT1, HYALP1, TES, GPR37, GRM8, MDFIC, ST7-OT4, KCND2, RNF148, FEZF1, MET, LMOD2, NDUFA5, TAS2R16, WNT16, LSM8, ING3, ANKRD7, PTPRZ1, SLC13A1, SPAM1, MIR592, TMEM229A, WNT2, GCC1, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2) 0.41160539091532 86 0.148476471257569 1.03232772101834 4260 0.317476158069155 4 2 2 -6.83474443568562 LTS-005 chr7 127222522 127250626 28105 * c(FSCN3, ARF5, PAX4, GCC1) 0 1 NA 1.04196233380247 153 0.286258843334135 4 4 0 -5.76454225855237 LTS-005 chr7 127250627 128035385 784759 * c(MGC27345, SND1, SND1-IT1, IMPDH1, LEP, PRRT4, MIR129-1, PAX4, RBM28, LRRC4, MIR593) 0.301912457542609 14 0.238694676001892 1.06110779156892 596 0.341291031856034 4 3 1 -6.7360511063705 LTS-005 chr7 128035386 128098201 62816 * c(HILPDA, IMPDH1) 0.446 1 NA 1.02437650697839 69 0.216458501877272 4 4 0 -5.76585322127558 LTS-005 chr7 128098202 128486446 388245 * c(FLNC, HILPDA, FAM71F2, LINC01000, METTL2B, OPN1SW, CCDC136, CALU, FAM71F1) 0.455791791443329 12 0.0358341085187469 0.984606629729294 676 0.256792487185484 4 2 2 -8.31503495850353 LTS-005 chr7 128486447 128487893 1447 * FLNC 0.451 1 NA 1.11133101595448 11 0.202684663275919 4 4 0 -5.7644424437315 LTS-005 chr7 128487894 128547163 59270 * c(LOC100130705, FLNC, KCP, ATP6V1F) 0.228122677800095 9 0.235978165185774 1.14173306285218 355 0.438614978562194 5 4 1 -6.73687084682114 LTS-005 chr7 128547164 128589488 42325 * c(IRF5, KCP) 0.463 1 NA 0.999786173294436 87 0.209263721171787 4 4 0 -5.76698574730325 LTS-005 chr7 128589489 129067053 477565 * c(AHCYL2, TNPO3, TPI1P2, TSPAN33, IRF5, LOC407835, SMO) 0.46561264163474 17 0.0261259674743461 0.98166605919018 448 0.260790678742565 4 2 2 -9.73212693950436 LTS-005 chr7 129067054 129067986 933 * AHCYL2 0 1 NA 1.22457074214616 18 0.62784875213347 5 5 0 -5.76441490855506 LTS-005 chr7 129067987 129474471 406485 * c(SMKR1, RNA5SP244, AHCYL2, MIR182, MIR183, MIR96, NRF1, STRIP2, UBE2H) 0.225738093974514 9 0.243708044822306 1.06198465149976 409 0.469674238704765 4 3 1 -6.7690056824279 LTS-005 chr7 129474472 129663496 189025 * c(ZC3HC1, UBE2H) 0.478 1 NA 1.06964076861064 81 0.467730108088357 4 4 0 -5.76441053407301 LTS-005 chr7 129663497 132766614 3103118 * c(TSGA13, CPA1, CPA2, KLF14, SSMEM1, KLHDC10, COPG2, FLJ40288, MESTIT1, LINC-PINT, MIR29A, MIR29B1, MEST, MKLN1, MIR335, CPA4, ZC3HC1, PODXL, CHCHD3, NA, TMEM209, PLXNA4, CPA5, CEP41) 0.438559946131111 65 0.0884718746051752 1.01776267124577 1938 0.386434412792183 4 2 2 -6.94051795092388 LTS-005 chr7 132766615 132766785 171 * CHCHD3 NA 0 NA 0.639 1 NA NA NA NA NA LTS-005 chr7 132766786 132766864 79 * CHCHD3 0.491 1 NA 0.186 1 NA NA NA NA NA LTS-005 chr7 132766865 133164862 397998 * EXOC4 0 1 NA 0.632579551627656 52 0.210012729449717 2 2 0 -5.77111928022586 LTS-005 chr7 133164863 141618802 8453940 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, MIR490, PTN, KIAA1549, NA NA NA NA NA NA NA NA NA LTS-005 EXOC4, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.118151315197582 145 0.0561779576972542 0.631850202746016 6078 0.22763763411749 2 2 0 -6.85876234091482 LTS-005 NA NA NA NA LTS-005 chr7 141618803 141618891 89 * OR9A4 NA 0 NA 0.991 1 NA NA NA NA NA LTS-005 chr7 141618892 142032374 413483 * c(MOXD2P, OR9A4, PRSS58, CLEC5A, TAS2R38, NA, MGAM, MGAM2) 0.146362485869238 23 0.116140146361359 0.690974627458779 850 0.356792683500538 2 2 0 -6.77957235683566 LTS-005 chr7 142032375 142045446 13072 * character(0) 0.338 1 NA 0.702032646994162 7 0.316761138790129 2 2 0 -5.76592852257025 LTS-005 chr7 142045447 142168474 123028 * character(0) 0.303156276146069 18 0.128014807150084 0.746180702754365 109 0.582678802005436 4 3 1 -6.77227569218139 LTS-005 chr7 142168475 142180897 12423 * character(0) 0.096 1 NA 0.680215794408336 25 0.386692526434117 2 2 0 -5.76498957969727 LTS-005 chr7 142180898 142470612 289715 * c(MTRNR2L6, PRSS1) 0.178929915712618 31 0.0889857545685209 0.740250804018905 235 0.432776947017928 2 2 0 -6.96626540533747 LTS-005 chr7 142470613 142470645 33 * character(0) 0.396 1 NA 0.883 1 NA NA NA NA NA LTS-005 chr7 142470646 142498897 28252 * PRSS3P2 0.312350877999251 14 0.125941661882803 1.62727466292099 57 4.41908473460331 10 7 3 -6.73334662792226 LTS-005 chr7 142498898 142499805 908 * character(0) 0 1 NA 0.592222345654331 9 0.609105582892745 2 2 0 -5.76441151732332 LTS-005 chr7 142499806 142760402 260597 * c(OR9A2, C7orf34, EPHB6, OR6V1, KEL, TRPV6, TRPV5, OR6W1P) 0.105818178448655 22 0.0507341129463226 0.66234349056091 559 0.343709209083708 2 2 0 -6.84275220453159 LTS-005 chr7 142760403 142829088 68686 * OR6W1P NA 0 NA 0.034 1 NA NA NA NA NA LTS-005 chr7 142829089 142881627 52539 * c(TAS2R39, PIP) NA 0 NA 0.0749560847086571 45 0.0196560063557831 0 NA NA -13.8408641367252 LTS-005 chr7 142881628 142919075 37448 * character(0) NA 0 NA 0.752 1 NA NA NA NA NA LTS-005 chr7 142919076 143305429 386354 * c(CLCN1, TMEM139, EPHA1, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.112872916783146 12 0.065585244090605 0.655724043200786 735 0.224481128714172 2 2 0 -6.78320755422209 LTS-005 chr7 143305430 143400288 94859 * c(LOC154761, TCAF2) NA 0 NA 0.191746732942289 44 0.188074322664382 0 NA NA -5.8468275723181 LTS-005 chr7 143400289 143400387 99 * c(LOC154761, TCAF2) NA 0 NA 0.803 1 NA NA NA NA NA LTS-005 chr7 143400388 143840031 439644 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.14606116218953 9 0.0218574929943944 0.690426689183643 279 0.262756699159113 2 2 0 -7.22267398912304 LTS-005 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.175 1 NA NA NA NA NA LTS-005 chr7 143883365 143981556 98192 * c(OR2A7, ARHGEF35, ARHGEF34P) 0 1 NA 0.154932603244213 78 0.583044600204398 0 0 0 -5.76444758448351 LTS-005 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 0.171 1 NA NA NA NA NA LTS-005 chr7 143982346 144072678 90333 * c(ARHGEF34P, ARHGEF5) 0 1 NA 0.230685635560931 66 0.38809393433137 0 0 0 -5.82510136201839 LTS-005 chr7 144072679 144074199 1521 * ARHGEF5 NA 0 NA 0.497 1 NA NA NA NA NA LTS-005 chr7 144074200 159025874 14951675 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, NA NA NA NA NA NA NA NA NA LTS-005 CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, VIPR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.0982424007180638 297 0.055472079518904 0.727433954739066 9611 0.329488738328139 3 3 0 -8.08732323038795 LTS-005 NA NA NA NA LTS-005 chr7 159025875 159025951 77 * character(0) NA 0 NA 0.414 1 NA NA NA NA NA LTS-005 chr8 182757 261261 78505 * ZNF596 0.441 1 NA 0.888522737198268 75 0.251065758587536 3 3 0 -5.76679645684094 LTS-005 chr8 261262 413113 151852 * FBXO25 0.421135573749744 2 0.05939696961967 0.96191747591631 54 0.370982040944039 4 2 2 -6.90425519410019 LTS-005 chr8 413114 1655956 1242843 * c(TDRP, ERICH1, FBXO25, LOC286083, ERICH1-AS1, DLGAP2) 0.456569323025093 21 0.0493666071830129 1.11937733873062 514 0.27216249306304 4 2 2 -7.69321876730345 LTS-005 chr8 1655957 1729527 73571 * c(CLN8, DLGAP2) 0 1 NA 1.03535453733685 49 0.235746244226004 4 4 0 -5.76520823153624 LTS-005 chr8 1729528 2793552 1064025 * c(CLN8, CSMD1, MIR596, MYOM2, ARHGEF10, KBTBD11) 0.362902077605308 27 0.197054318801706 1.07829652006264 666 0.407115808885199 4 2 2 -6.74438267772199 LTS-005 chr8 2793553 2794494 942 * CSMD1 0.462 1 NA 1.02470351560948 19 0.47930210595399 4 4 0 -5.7644144785944 LTS-005 chr8 2794495 7305471 4510977 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, ANGPT2, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, CSMD1, USP17L4, DEFA11P, DEFA1B, MCPH1) 0.420279097220702 48 0.101122845031348 1.08783389288286 972 0.429873993749832 4 2 2 -6.79213845673444 LTS-005 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.6 1 NA NA NA NA NA LTS-005 chr8 7308044 7752099 444056 * c(DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.359843106902783 2 0.0806101730552664 0.748001283697636 95 0.542711565818356 3 2 1 -6.75092217132809 LTS-005 chr8 7752100 7752127 28 * character(0) 0.47 1 NA 4.206 1 NA NA NA NA NA LTS-005 chr8 7752128 10692359 2940232 * c(FAM66E, ZNF705B, MIR1322, MIR548I3, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, DEFB4A, PRSS55, C8orf74, FAM86B3P, USP17L8, MIR124-1, MSRA, PINX1, USP17L3, MIR597, PPP1R3B, SOX7, TNKS, ERI1, MFHAS1, RP1L1) 0.432075781490435 81 0.0924977343733214 1.09827711497128 1449 3.33918194222748 4 2 2 -6.85671686027427 LTS-005 chr8 10692360 10755075 62716 * c(XKR6, PINX1, SOX7) 0 1 NA 1.07316320036349 43 0.414433349415102 4 4 0 -5.76441393599263 LTS-005 chr8 10755076 11180515 425440 * c(XKR6, MTMR9, MIR598) 0.334798386465652 14 0.219730604289749 1.08552091889575 388 0.396126700231367 4 3 1 -6.76340851248337 LTS-005 chr8 11180516 11279221 98706 * c(TDH, MTMR9, FAM167A, SLC35G5, FAM167A-AS1) 0.491 1 NA 1.09156162060218 143 1.7029259829418 4 4 0 -5.76441928218485 LTS-005 chr8 11279222 11832028 552807 * c(CTSB, FDFT1, NEIL2, GATA4, DEFB136, BLK, FAM167A, LINC00208, FAM167A-AS1) 0.428148593517527 42 0.102251054590769 1.08136175640953 644 0.424349660286369 4 2 2 -6.81710251667498 LTS-005 chr8 11832029 11839875 7847 * c(DEFB135, DEFB136) 0 1 NA 1.27044246867853 5 2.48319568298594 5 5 0 -5.76441047893631 LTS-005 chr8 11839876 12883650 1043775 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DEFB109P1, DEFB130, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, KIAA1456, DEFB135, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, FAM86B1, LONRF1) 0.310185203221218 13 0.211954185906004 1.07963766959198 269 0.407307659673628 4 3 1 -6.7415110727977 LTS-005 chr8 12883651 12888600 4950 * KIAA1456 0.468 1 NA 1.06468337657937 3 0.234927648436705 4 4 0 -5.76441089838169 LTS-005 chr8 12888601 22105668 9217068 * c(NAT2, LOC100128993, LZTS1-AS1, NPM2, DLC1, LZTS1, VPS37A, SGCZ, C8orf48, LGI3, DMTN, FGL1, XPO7, PSD3, FGF20, GFRA2, MICU3, LOC286114, CNOT7, LPL, MIR320A, ASAH1, MSR1, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, SH2D4A, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, NUDT18, TUSC3, REEP4, FGF17, NAT1, DOK2, MTMR7, PHYHIP) 0.445424225393621 147 0.0833066847709018 1.07284657053347 4338 0.554338181800136 4 2 2 -6.99074773819422 LTS-005 chr8 22105669 23429182 1323514 * c(LOC100507156, SORBS3, PEBP4, EGR3, R3HCC1, RHOBTB2, SLC39A14, LOC254896, LOC286059, LOC389641, LOXL2, SLC25A37, C8orf58, PIWIL2, PPP3CC, BIN3, CCAR2, PDLIM2, POLR3D, BIN3-IT1, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.442505766852604 94 0.0996239239252133 1.01932164254926 2114 0.28168850138104 4 2 2 -6.91957552297787 LTS-005 chr8 23429183 23429678 496 * SLC25A37 0 1 NA 1.09552381912241 11 0.223420679436797 4 4 0 -5.76441379039493 LTS-005 chr8 23429679 24188804 759126 * c(ADAM28, NKX2-6, NKX3-1, SLC25A37, STC1) 0.277169863613477 9 0.246620040638316 1.13890465901165 316 2.69645769140274 4 3 1 -6.73397709693178 LTS-005 chr8 24188805 24188844 40 * ADAM28 0.443 1 NA 2.227 1 NA NA NA NA NA LTS-005 chr8 24188845 25325730 1136886 * c(ADAM28, CDCA2, ADAMDEC1, GNRH1, NEFM, NEFL, KCTD9, PPP2R2A, DOCK5, ADAM7) 0.44342122595783 35 0.0852948125152802 1.03575507557374 1074 0.29330803416533 4 2 2 -6.970141056785 LTS-005 chr8 25325731 25346096 20366 * c(CDCA2, PPP2R2A) 0 1 NA 1.07673005328185 37 0.630159565568974 4 4 0 -5.76441185793992 LTS-005 chr8 25346097 26365822 1019726 * c(PNMA2, CDCA2, PPP2R2A, EBF2, BNIP3L) 0.222399201428478 10 0.24153787372676 1.0625679684272 463 0.624203349381822 4 3 1 -6.77382717059255 LTS-005 chr8 26365823 26514231 148409 * c(PNMA2, DPYSL2) 0.428 1 NA 1.06065337553309 129 0.267826399929191 4 4 0 -5.76448108246339 LTS-005 chr8 26514232 26944733 430502 * c(ADRA1A, DPYSL2) 0.467553227206992 10 0.0254112835829545 1.09955935201184 160 0.338025715349323 4 2 2 -9.90726847528627 LTS-005 chr8 26944734 27143313 198580 * c(TRIM35, STMN4) 0 1 NA 1.04335820874926 95 0.237428778971688 4 4 0 -5.76562736234774 LTS-005 chr8 27143314 27398083 254770 * c(CHRNA2, EPHX2, PTK2B, TRIM35) 0.337585405984496 14 0.187507010857939 1.05970276356388 434 0.416890581478817 4 3 1 -6.77893624759516 LTS-005 chr8 27398084 27402664 4581 * EPHX2 0.465 1 NA 0.988143267225143 31 0.287111289351565 4 4 0 -5.76461488790305 LTS-005 chr8 27402665 28575013 1172349 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, CLU, ESCO2, FBXO16, EXTL3, SCARA5, NUGGC, SCARA3, PNOC, ELP3, CCDC25, PBK, ZNF395, FZD3) 0.431810840503864 54 0.0930201769475693 1.04821274708682 1360 0.405511769335199 4 2 2 -6.8553533818477 LTS-005 chr8 28575014 28608824 33811 * EXTL3 0 1 NA 1.05250289876951 49 0.362475119953127 4 4 0 -5.76444615486789 LTS-005 chr8 28608825 30040514 1431690 * c(MIR3148, MIR548O2, DCTN6, DUSP4, EXTL3, KIF13B, LEPROTL1, FAM183CP, SARAF, INTS9, LINC00589, MBOAT4, HMBOX1) 0.275869208694213 17 0.235101167210053 1.00032350229472 975 0.355035780616296 4 3 1 -6.76369629576351 LTS-005 chr8 30040515 30040534 20 * c(MIR548O2, DCTN6) 0.48 1 NA 0.411 1 NA NA NA NA NA LTS-005 chr8 30040535 35093110 5052576 * c(RBPMS-AS1, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, UNC5D, GSR, GTF2E2, PURG, NRG1, PPP2CB, TEX15, WRN, DUSP26, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.448159596362373 54 0.0930636189754054 1.02758072313217 1434 0.273175161307375 4 2 2 -7.02308944118663 LTS-005 chr8 35093111 35563436 470326 * UNC5D 0 1 NA 1.12744026627873 47 0.416509753370913 4 4 0 -5.76906327536929 LTS-005 chr8 35563437 38104916 2541480 * c(ERLIN2, PROSC, GOT1L1, UNC5D, ADRB3, KCNU1, EIF4EBP1, DDHD2, ADGRA2, LSM1, BRF2, STAR, LOC728024, ZNF703, RAB11FIP1, ASH2L, BAG4) 0.338050300058862 21 0.206885935907182 1.0575214553283 1711 0.324849334775187 4 2 2 -6.77173937984283 LTS-005 chr8 38104917 38110215 5299 * DDHD2 0.467 1 NA 1.01320770617025 23 0.192985213138516 4 4 0 -5.76465281836964 LTS-005 chr8 38110216 38988307 878092 * c(LETM2, HTRA4, ADAM32, FGFR1, DDHD2, RNF5P1, C8orf86, WHSC1L1, PLEKHA2, TACC1, TM2D2, PLPP5, ADAM9) 0.450581647513745 21 0.036309253707036 1.01896034422504 1233 0.232979430653875 4 2 2 -8.09479362646284 LTS-005 chr8 38988308 38991623 3316 * ADAM32 0 1 NA 1.23228725119251 5 1.25078095604306 5 5 0 -5.76441353671292 LTS-005 chr8 38991624 39695797 704174 * c(LOC100130964, ADAM3A, ADAM32, ADAM2, ADAM5, ADAM18) 0.262282394501404 12 0.234138831517206 1.13241876430587 368 0.455224574589328 4 3 1 -6.74578229880858 LTS-005 chr8 39695798 39842893 147096 * c(IDO2, ADAM2, IDO1) 0.482 1 NA 1.12942100304374 99 0.253099319462273 4 4 0 -5.76861434910845 LTS-005 chr8 39842894 41402340 1559447 * c(IDO2, GOLGA7, C8orf4, SFRP1, ZMAT4, GINS4) 0.407094046311597 22 0.139628736235361 1.10144857280257 432 0.554096809247462 4 2 2 -6.74514084242414 LTS-005 chr8 41402341 41467132 64792 * c(GPAT4, GINS4) 0 1 NA 1.04519518909069 33 0.566424979653756 4 4 0 -5.76447007274159 LTS-005 chr8 41467133 41511139 44007 * c(GPAT4, NKX6-3, ANK1) 0.229491238897052 9 0.21645098239042 1.09935964684241 229 0.540590321247374 5 4 1 -6.73619898426414 LTS-005 chr8 41511140 41511287 148 * c(NKX6-3, ANK1) 0.44 1 NA 1.00888342611366 5 0.250387100306705 4 4 0 -5.76441480235072 LTS-005 chr8 41511288 43211950 1700663 * c(MIR4469, AP3M2, CHRNB3, SMIM19, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, POTEA, IKBKB, PLAT, POLB, THAP1, MIR486-1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.415049351872399 54 0.149829462805312 1.04828107135172 2012 0.332571366145721 4 2 2 -6.75363772275971 LTS-005 chr8 43211951 43212050 100 * POTEA NA 0 NA 0.778205543464312 3 0.0484974226119285 3 NA NA -5.76455618749294 LTS-005 chr8 47752736 47759712 6977 * LINC00293 0.475 1 NA 1.11928370435189 23 0.262000920253038 4 4 0 -5.76454052644918 LTS-005 chr8 47759713 48842531 1082819 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0.287925694796268 11 0.233889756470475 1.032157425254 623 0.301937723823182 4 3 1 -6.74170625841322 LTS-005 chr8 48842532 48920946 78415 * c(MCM4, PRKDC) 0.463 1 NA 1.02931662833406 205 0.215266175807246 4 4 0 -5.76584136390061 LTS-005 chr8 48920947 52366200 3445254 * c(PXDNL, C8orf22, SNTG1, SNAI2, UBE2V2, EFCAB1) 0.468819028852663 16 0.0188775660507386 1.1526747598702 505 0.400920628711571 4 2 2 -11.3289168452883 LTS-005 chr8 52366201 52370110 3910 * PXDNL 0 1 NA 1.57399907529532 7 1.27900819089674 6 6 0 -5.76441146834534 LTS-005 chr8 52370111 53852102 1481992 * c(PCMTD1, PXDNL, FAM150A, ST18, RB1CC1) 0.320542075102343 17 0.174358445872458 1.09961082349861 633 0.572978589617464 4 3 1 -6.75929051690043 LTS-005 chr8 53852103 53853659 1557 * NPBWR1 0.47 1 NA 1.07358788623278 33 0.152341261149056 4 4 0 -5.76441097153635 LTS-005 chr8 53853660 54871577 1017918 * c(OPRK1, ATP6V1H, RGS20) 0.447808718826922 19 0.0324317547081605 1.08960759572428 283 0.30056355733204 4 2 2 -8.22490933771273 LTS-005 chr8 54871578 56863151 1991574 * c(SBF1P1, LYPLA1, XKR4, TMEM68, MRPL15, LYN, RP1, SOX17, TCEA1, RGS20, TGS1) 0.436900012101575 7 0.177118335476327 1.02751011770357 901 0.225085322751595 4 2 2 -6.81162669906615 LTS-005 chr8 56863152 56866452 3301 * LYN 0.431 1 NA 0.95926967493707 13 0.116082309436462 4 4 0 -5.76612441879377 LTS-005 chr8 56866453 57285647 419195 * c(SDR16C5, SNORD54, LYN, MOS, PLAG1, RPS20, CHCHD7) 0.229744215616049 9 0.227710220333749 1.04151729317462 383 0.547539378295772 4 3 1 -6.7694172221192 LTS-005 chr8 57285648 57335918 50271 * character(0) 0.496 1 NA 1.08947266008906 29 0.275138330636103 4 4 0 -5.76455775602288 LTS-005 chr8 57335919 61851361 4515443 * c(LINC00968, LINC01606, UBXN2B, CYP7A1, LINC00588, LOC286177, PENK, IMPAD1, CHD7, RAB2A, SDCBP, CA8, NSMAF, FAM110B, TOX) 0.438225243916027 25 0.0953178542211968 1.01987085551061 1342 0.263934878336348 4 2 2 -6.96874881023604 LTS-005 chr8 61851362 61878947 27586 * LOC100130298 0 1 NA 1.43123627695595 3 0.746161063935484 6 6 0 -5.76453411863636 LTS-005 chr8 61878948 65291719 3412772 * c(MIR124-2HG, LOC100130298, MIR4470, YTHDF3-AS1, CLVS1, YTHDF3, NKAIN3, LINC01289, MIR124-2, ASPH, UG0898H09, TTPA, GGH) 0.317338546784812 13 0.228377611278631 1.06748928905348 679 0.447393483426375 4 3 1 -6.74464033755363 LTS-005 chr8 65291720 65488962 197243 * c(MIR124-2HG, LOC401463, MIR124-2) 0.491 1 NA 1.01778229165317 9 0.352817941720656 4 4 0 -5.76667511401132 LTS-005 chr8 65488963 67999025 2510063 * c(TCF24, LINC00967, RRS1-AS1, C8orf44-SGK3, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, C8orf46, PTTG3P, BHLHE22, LINC01299, PPP1R42, LOC401463, MYBL1, PDE7A, ARMC1, LINC00251, C8orf44, SNHG6, SNORD87, CSPP1, VCPIP1, TRIM55, DNAJC5B, CYP7B1, MTFR1) 0.437738504035097 29 0.0965166847925775 1.0022273539043 1663 0.282365877776851 4 2 2 -6.955229187546 LTS-005 chr8 67999026 67999086 61 * CSPP1 NA 0 NA 1.35 1 NA NA NA NA NA LTS-005 chr8 67999087 74204653 6205567 * c(C8orf89, MSC-AS1, LINC01592, NCOA2, ARFGEF1, C8orf34, SBSPON, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LACTB2, CPA6, RPL7, PRDM14, TERF1, CSPP1, PREX2, SLCO5A1, TRPA1, MSC, KCNB2) 0.437686443539476 65 0.117082139559568 1.0792656564954 2629 0.295851580941516 4 2 2 -6.83642473194147 LTS-005 chr8 74204654 74236165 31512 * c(RDH10, RPL7) 0 1 NA 1.03543030841705 95 0.242082747553257 4 4 0 -5.76473283981754 LTS-005 chr8 74236166 75515458 1279293 * c(STAU2-AS1, MIR5681A, MIR5681B, RDH10, LY96, STAU2, MIR2052HG, GDAP1, TMEM70, UBE2W, JPH1, TCEB1) 0.333421548244666 17 0.210393154384273 1.00977941454612 718 0.27663393352225 4 3 1 -6.79601311083306 LTS-005 chr8 75515459 75763075 247617 * c(MIR2052, MIR2052HG, PI15) 0.468 1 NA 1.10655331738298 91 0.196935763003307 4 4 0 -5.76904703238411 LTS-005 chr8 75763076 86027418 10264343 * c(ZFHX4-AS1, MIR5708, LOC101241902, STMN2, RALYL, FABP4, FABP5, HEY1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, PI15, ZC2HC1A, PMP2, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, ZFAND1, ZFHX4, CRISPLD1, LRRCC1, CHMP4C) 0.463310024569581 57 0.0340500056124153 1.05332148479657 2473 0.253943975016345 4 2 2 -8.73434270128117 LTS-005 chr8 86027419 86193794 166376 * c(E2F5, CA13, C8orf59, LRRCC1) 0 1 NA 1.06798113309989 228 0.330933425749626 4 4 0 -5.76441054998529 LTS-005 chr8 86193795 89051914 2858120 * c(REXO1L2P, WWP1, DCAF4L2, SLC7A13, CNBD1, ATP6V0D2, REXO1L1P, CA13, MMP16, RMDN1, CNGB3, CA1, CA2, CA3, PSKH2, CPNE3) 0.319425334107581 13 0.220599387450622 1.09577259768228 1187 0.382486754532985 4 3 1 -6.7544651330124 LTS-005 chr8 89051915 90785005 1733091 * c(MMP16, RIPK2) 0.438 1 NA 1.1352493454699 133 0.258512386151176 4 4 0 -5.82065845151469 LTS-005 chr8 90785006 100904183 10119178 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, C8orf37, VPS13B, DECR1, TMEM64, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, NBN, MTERF3, OTUD6B, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, NA NA NA NA NA NA NA NA NA LTS-005 SDC2, NECAB1, LINC00535, STK3, MIR599, OSGIN2, UQCRB, CALB1, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, RIPK2, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.431765205546597 134 0.107247350384594 1.06026826466114 5358 0.314889259353493 4 2 2 -6.82794257940308 LTS-005 NA NA NA NA LTS-005 chr8 100904184 104053252 3149069 * c(MIR4471, MIR5680, COX6C, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.416108175897558 30 0.119743288632031 0.974365351868121 1765 0.285588165880122 4 2 2 -6.95374890860148 LTS-005 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.153 1 NA NA NA NA NA LTS-005 chr8 104054528 104413734 359207 * c(MIR3151, BAALC-AS1, CTHRC1, BAALC-AS2, ATP6V1C1, BAALC, SLC25A32, FZD6) 0.465316213125743 12 0.0389719207386627 1.11045135948412 405 4.37796760388928 4 2 2 -8.41818273479272 LTS-005 chr8 104413735 104438325 24591 * c(DCAF13, SLC25A32) 0 1 NA 1.07370022542945 61 0.2973251242465 4 4 0 -5.76441376783213 LTS-005 chr8 104438326 106813518 2375193 * c(DPYS, ZFPM2, DCAF13, LRP12, DCSTAMP, RIMS2) 0.226665641272472 9 0.229799066819496 1.10187041415294 701 0.366087654521079 4 3 1 -6.78209548198635 LTS-005 chr8 106813519 106813672 154 * ZFPM2 0.454 1 NA 0.972448548494617 5 0.0782796269791828 4 4 0 -5.76454358663119 LTS-005 chr8 106813673 120592497 13778825 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, ABRA, TMEM74, SLC30A8, EXT1, ZFPM2, KCNV1, ANGPT1, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TRHR, TRPS1, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2) 0.413976237659046 73 0.137961162447943 1.10512681979072 3405 0.831489869068343 4 2 2 -6.76500864891943 LTS-005 chr8 120592498 120594644 2147 * ENPP2 NA 0 NA 0.917 1 NA NA NA NA NA LTS-005 chr8 120594645 126449835 5855191 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, ENPP2, TRMT12, WDYHV1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.438342104153598 96 0.10338553240857 1.02742580050387 3389 0.407588535829296 4 2 2 -6.89581643030102 LTS-005 chr8 126449836 126450434 599 * TRIB1 NA 0 NA 1.11567562003568 12 0.172654388530347 4 NA NA -5.7644324054931 LTS-005 chr8 126450435 127566207 1115773 * c(LINC00861, TRIB1, FAM84B) 0 1 NA 1.61537881576697 33 0.24731723432454 6 6 0 -5.79908581556812 LTS-005 chr8 127566208 132002689 4436482 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, ADCY8, FAM84B, ASAP1-IT1, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977) 0.158061230751735 13 0.171047826570112 1.50234745070148 725 0.54056232610626 6 5 1 -6.77442305196999 LTS-005 chr8 132002690 132051567 48878 * ADCY8 0.277 1 NA 1.80094315073624 5 0.530849036921044 7 7 0 -5.76447742469927 LTS-005 chr8 132051568 136246753 4195186 * c(HHLA1, NDRG1, ADCY8, TMEM71, EFR3A, LRRC6, LINC01591, KCNQ3, MIR30B, MIR30D, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, OC90, WISP1, HPYR1) 0.309242363036024 64 0.0915315400146874 1.55702071294259 1959 0.515348044538426 6 4 2 -6.81141052134822 LTS-005 chr8 136246754 136300303 53550 * LINC01591 NA 0 NA 1.716 1 NA NA NA NA NA LTS-005 chr8 136300304 140946146 4645843 * c(KHDRBS3, COL22A1, LINC01591, FAM135B, KCNK9, TRAPPC9) 0.238829864172946 22 0.136738382619458 1.73790939301763 786 0.519741928000513 7 6 1 -6.85895458793862 LTS-005 chr8 140946147 142221402 1275256 * c(DENND3, AGO2, CHRAC1, SLC45A4, PTK2, TRAPPC9) 0.324081616371218 27 0.0731790918717873 1.53094113548137 915 0.437422107186316 6 4 2 -6.76781750159867 LTS-005 chr8 142221403 142221414 12 * SLC45A4 0.356 1 NA 2.351 1 NA NA NA NA NA LTS-005 chr8 142221415 146063982 3842568 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, C8orf82, NA NA NA NA NA NA NA NA NA LTS-005 LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, ADGRB1, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.297995775825921 276 0.09925770049079 1.70039314379101 6919 0.588849130886355 7 5 2 -6.74127177524942 LTS-005 NA NA NA NA LTS-005 chr8 146063983 146066740 2758 * c(COMMD5, ZNF7) NA 0 NA 1.239 1 NA NA NA NA NA LTS-005 chr8 146066741 146072378 5638 * c(COMMD5, ZNF7) 0.327465301190607 4 0.0296802403404465 1.49036028927085 68 0.352397377013116 15 10 5 -6.78415215169731 LTS-005 chr8 146072379 146072806 428 * c(COMMD5, ZNF7) 0 1 NA 1.12671659025309 9 0.531964780580235 4 4 0 -5.76441266459446 LTS-005 chr8 146072807 146200945 128139 * c(ZNF252P, COMMD5, ZNF250, ZNF7, ZNF16) 0.145709368368988 9 0.158372012819325 1.56800241517852 259 0.36695887220999 7 6 1 -6.76190367098242 LTS-005 chr8 146200946 146202386 1441 * ZNF252P 0.252 1 NA 1.60881952371608 27 0.48667430915437 6 6 0 -5.76442014335833 LTS-005 chr8 146202387 146280802 78416 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) 0.276159336299158 14 0.0851285066083192 1.57547501727677 198 0.715815503410503 8 6 2 -6.74120362778602 LTS-005 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.786657470007725 3 0.284056332441296 3 NA NA -5.76441336345837 LTS-005 chr9 14732 214864 200133 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.429 1 NA 0.853106304786939 45 0.570941113912421 3 3 0 -5.76450262770959 LTS-005 chr9 214865 2810489 2595625 * c(DMRT2, C9orf66, KCNV2, DMRT1, KANK1, VLDLR-AS1, DMRT3, SMARCA2, VLDLR, DOCK8, PUM3) 0.411570548353402 37 0.107825887067633 0.870407647355944 1098 0.227714998614138 3 2 1 -6.94988640152557 LTS-005 chr9 2810490 2811390 901 * PUM3 NA 0 NA 1.101 1 NA NA NA NA NA LTS-005 chr9 2811391 8315020 5503630 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, GLIS3, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, RFX3, RLN1, RLN2, SLC1A1, ERMP1, PDCD1LG2, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.411469867288026 92 0.13816039819096 0.994940450790232 2814 0.323830062024459 4 2 2 -6.9048267711539 LTS-005 chr9 8315021 8315023 3 * PTPRD NA 0 NA 1.068 1 NA NA NA NA NA LTS-005 chr9 8315024 14857590 6542567 * c(LINC00583, FREM1, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, CER1) 0.400018667877513 35 0.151120203700189 1.08216712584414 1289 0.354313774693023 4 2 2 -6.74074391188517 LTS-005 chr9 14857591 14857740 150 * FREM1 0.5 1 NA 1.05081135597363 3 0.790408333289404 4 4 0 -5.76441017543724 LTS-005 chr9 14857741 18681452 3823712 * c(C9orf92, MIR3152, PSIP1, TTC39B, FREM1, CCDC171, LOC389705, BNC2, CNTLN, SH3GL2, SNAPC3, ADAMTSL1) 0.456204362464986 63 0.0648957255690436 1.02900343899661 1279 0.275462280398412 4 2 2 -7.34858242768044 LTS-005 chr9 18681453 18753338 71886 * ADAMTSL1 NA 0 NA 1.10582678687423 48 0.232602970410895 4 NA NA -5.76533958638191 LTS-005 chr9 18753339 18777368 24030 * ADAMTSL1 0.099 1 NA 0.660574202016512 29 0.111376043890548 2 2 0 -5.77156826483097 LTS-005 chr9 18777369 21815586 3038218 * c(MIR4473, MIR4474, RRAGA, PLIN2, SAXO1, SLC24A2, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, MIR31, MLLT3, MTAP, HAUS6, FOCAD, MIR31HG, DENND4C, KLHL9, MIR491, RPS6, SCARNA8, ADAMTSL1) 0.150526671728709 49 0.0472657579093819 0.602031628725866 1811 0.17451626578698 2 2 0 -6.89257511929045 LTS-005 chr9 21815587 21816600 1014 * MTAP NA 0 NA 0.165 1 NA NA NA NA NA LTS-005 chr9 21816601 22029576 212976 * c(CDKN2B-AS1, CDKN2A, CDKN2B, MTAP, CDKN2A-AS1) 0.364 1 NA 0.172544732277611 282 0.0495393545474104 0 0 0 -6.45747192398983 LTS-005 chr9 22029577 22154993 125417 * c(CDKN2B-AS1, MTAP) NA 0 NA 0.513 1 NA NA NA NA NA LTS-005 chr9 22154994 22447655 292662 * DMRTA1 0.146255715389207 2 0.0707106781186548 0.574240641281202 28 0.160460526883812 2 2 0 -6.80377639386006 LTS-005 chr9 22447656 24545598 2097943 * c(IZUMO3, ELAVL2, LINC01239, DMRTA1) NA 0 NA 0.686723789983182 170 0.19621766152071 2 NA NA -6.18387999797615 LTS-005 chr9 24545599 25676809 1131211 * c(IZUMO3, TUSC1) 0.391 1 NA 1.06094580355874 13 0.1922980125769 4 4 0 -5.76538389622738 LTS-005 chr9 25676810 32787346 7110537 * c(MIR876, MIR873, TOPORS-AS1, LOC100506422, TOPORS, TAF1L, LINC00032, LINGO2, C9orf72, DDX58, TUSC1, LINC01242, TMEM215, NDUFB6, ACO1, EQTN, IFNK, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.446652194809561 65 0.0852035966647851 1.06038640726703 1707 0.291745676937023 4 2 2 -6.99317439263729 LTS-005 chr9 32787347 33167334 379988 * c(B4GALT1, DNAJA1, TMEM215, APTX, SMU1) 0.352747926452519 5 0.0316985804098543 1.36931749969706 373 0.366447982884879 6 4 2 -6.82448776516895 LTS-005 chr9 33167335 33750845 583511 * c(PTENP1, B4GALT1, SPINK4, ANXA2P2, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, CHMP5, PRSS3, BAG1, NOL6) 0.433105407819299 29 0.0956343869149122 1.01087030401956 738 0.281445549322979 4 2 2 -6.86800129819528 LTS-005 chr9 33750846 33794809 43964 * PRSS3 0.009 1 NA 1.36294037327586 7 0.960807894182708 5 5 0 -5.7644788604328 LTS-005 chr9 33794810 33923183 128374 * c(UBE2R2, UBAP2, PRSS3) 0.208632905182582 13 0.151677204480351 1.09676729622073 159 0.560991827912666 5 4 1 -6.76057231625671 LTS-005 chr9 33923184 33927880 4697 * UBAP2 0.486 1 NA 0.994749112572038 25 0.200273562908338 4 4 0 -5.76477134752825 LTS-005 chr9 33927881 39178214 5250334 * c(SNORD121A, GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, SNORD121B, SIGMAR1, CREB3, UNC13B, CCL27, DCTN3, CLTA, CNTFR, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, FBXO10, DNAI1, SIT1, STOML2, NUDT2, KIF24, IGFBPL1, IL11RA, ENHO, FAM205BP, FAM221B, OR13J1, TOMM5, NA NA NA NA NA NA NA NA NA LTS-005 CNTFR-AS1, NPR2, PAX5, EXOSC3, UBAP1, TMEM8B, UBAP2, OR2S2, KIAA1161, GBA2, RMRP, CCL19, CCL21, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.431938482951203 144 0.107954124728252 1.04579088587652 6417 0.346517576666931 4 2 2 -6.83595709655406 LTS-005 NA NA NA NA LTS-005 chr9 40498471 40503114 4644 * c(ZNF658B, NA) 0 1 NA 0.618066850885461 31 0.993855956547825 2 2 0 -5.76441054159685 LTS-005 chr9 40503115 43816802 3313688 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.71772709778272 25 0.343807116466971 3 NA NA -6.15251983140477 LTS-005 chr9 43816803 43818002 1200 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.002 1 NA NA NA NA NA LTS-005 chr9 43818003 44175697 357695 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.390498214656967 41 0.428640119959651 1 NA NA -5.76501955646607 LTS-005 chr9 65602571 66457106 854536 * LOC286297 0.247 1 NA 0.989476171073169 3 0.01113552872566 4 4 0 -12.4145367231002 LTS-005 chr9 66457107 71006661 4549555 * c(FRG1HP, FAM27B, LOC100133920, LOC286297, FOXD4L3, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.354817663927026 27 0.10682996314537 0.836906376172511 84 0.500141030024474 3 2 1 -6.7335982357468 LTS-005 chr9 71006662 71079984 73323 * PGM5 NA 0 NA 0.987 1 NA NA NA NA NA LTS-005 chr9 71079985 72841914 1761930 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf135, TMEM252, FXN, MAMDC2, APBA1, PTAR1, C9orf135-AS1, PGM5, PRKACG, PIP5K1B, FAM189A2, TJP2) 0.367352900900145 16 0.151853424393393 1.0576843490517 1105 0.30573253818854 4 2 2 -6.74716712054371 LTS-005 chr9 72841915 72897434 55520 * c(SMC5-AS1, SMC5) 0.479 1 NA 0.972050112390153 30 0.168593713494558 4 4 0 -5.7749225306002 LTS-005 chr9 72897435 79122245 6224811 * c(TMC1, CARNMT1, C9orf57, C9orf85, TRPM6, ALDH1A1, SMC5, TMEM2, GCNT1, OSTF1, ANXA1, MIR204, ABHD17B, PCSK5, NMRK1, C9orf40, RFK, RORB, RPSAP9, KLF9, ZFAND5, TRPM3, GDA) 0.45387691265025 75 0.0626745979263148 1.02762504273824 2595 0.270452283701372 4 2 2 -7.38219069467094 LTS-005 chr9 79122246 79328522 206277 * c(PRUNE2, GCNT1) 0 1 NA 0.98300371795373 309 0.258668955797392 4 4 0 -5.77730628139141 LTS-005 chr9 79328523 80890830 1562308 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, FOXB2, PCA3, CEP78, GNA14) 0.343674089906852 17 0.22304750878786 1.06836724856677 993 0.274457596383753 4 2 2 -6.75843017047362 LTS-005 chr9 80890831 80921446 30616 * PSAT1 0.49 1 NA 1.03040359022032 105 0.274753690226429 4 4 0 -5.76473419862073 LTS-005 chr9 80921447 87430380 6508934 * c(RASEF, FRMD3, PSAT1, UBQLN1, HNRNPK, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, MIR7-1, IDNK, NTRK2, KIF27, SLC28A3, TLE1, TLE4, RMI1, GKAP1, C9orf64) 0.446132794511099 53 0.0733215872195548 1.05120853253791 1815 0.269061909167605 4 2 2 -7.08400750774532 LTS-005 chr9 87430381 87430521 141 * NTRK2 0.03 1 NA 1.92790214614446 5 3.05791200004186 8 8 0 -5.76441014223335 LTS-005 chr9 87430522 88611293 1180772 * c(AGTPBP1, LOC389765, NTRK2, NAA35) 0.28478743738042 11 0.218526012597627 1.03746524245357 477 0.452381416821505 4 3 1 -6.73608200229752 LTS-005 chr9 88611294 88636887 25594 * NAA35 0.458 1 NA 1.03440177234726 47 0.205887306052873 4 4 0 -5.76479561500036 LTS-005 chr9 88636888 94951819 6314932 * c(LOC100128076, UNQ6494, LOC100129316, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, CTSL, CTSLP8, NXNL2, LINC00475, DAPK1, S1PR3, CDK20, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, LINC01501, C9orf153, CTSL3P, LOC392364, C9orf170, LOC440173, SPATA31C1, NFIL3, ROR2, LOC494127, GOLM1, SHC3, DIRAS2, AUH, NAA35, SPATA31C2, SYK, SECISBP2, ZCCHC6, ISCA1) 0.440183047976515 80 0.115787537314982 1.03901071403937 2510 0.305310042566476 4 2 2 -6.87723054336246 LTS-005 chr9 94951820 94951902 83 * character(0) NA 0 NA 1.018 1 NA NA NA NA NA LTS-005 chr9 94951903 94952708 806 * character(0) NA 0 NA 0.686 1 NA NA NA NA NA LTS-005 chr9 94952709 95012164 59456 * IARS 0 1 NA 0.586220767732003 63 0.277283318853642 2 2 0 -5.76518572181407 LTS-005 chr9 95012165 95420983 408819 * c(SNORA84, LOC100128361, MIR4670, ECM2, IARS, CENPP, OMD, OGN, ASPN, NOL8, IPPK) 0.131786633253179 30 0.0280868112379679 0.600634144521642 874 0.13445980910142 2 2 0 -6.75553675468913 LTS-005 chr9 95420984 95571939 150956 * c(ANKRD19P, BICD2, IPPK) 0.467 1 NA 0.629241071071341 158 0.166752322972732 2 2 0 -5.76732657459999 LTS-005 chr9 95571940 95572019 80 * ANKRD19P NA 0 NA 0.698 1 NA NA NA NA NA LTS-005 chr9 95572020 95572100 81 * ANKRD19P NA 0 NA 1.092 1 NA NA NA NA NA LTS-005 chr9 95572101 97078536 1506436 * c(MIR4291, PTPDC1, ANKRD19P, MIRLET7DHG, FAM120AOS, ZNF169, SUSD3, FAM120A, MIRLET7A1, MIRLET7D, MIRLET7F1, C9orf129, NINJ1, PHF2, BARX1, WNK2, ZNF484, CARD19, FGD3) 0.401564636324355 38 0.161715254732158 1.03485193498615 1243 0.369099680516841 4 2 2 -6.74314336885242 LTS-005 chr9 97078537 97078567 31 * character(0) NA 0 NA 1.549 1 NA NA NA NA NA LTS-005 chr9 97078568 97082677 4110 * NUTM2F 0.262178569524013 2 0.0318198051533947 2.33820883163816 39 11.635656833053 16 12 4 -6.73392545533554 LTS-005 chr9 97082678 97088136 5459 * NUTM2F NA 0 NA 0.518 1 NA NA NA NA NA LTS-005 chr9 97088137 99700859 2612723 * c(LINC00476, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441454, LOC441455, NUTM2G, NUTM2F, PTCH1, MFSD14B, C9orf3, CDC14B, FBP2) 0.426917796386873 46 0.119522706188766 1.01287691220015 1857 0.879283796260029 4 2 2 -6.79659436706818 LTS-005 chr9 99700860 99711238 10379 * c(NUTM2G, MFSD14C) 0 2 0 0.501861409154293 73 0.776665481753853 0 0 0 -Inf LTS-005 chr9 99711239 99711794 556 * MFSD14C NA 0 NA 1.144 1 NA NA NA NA NA LTS-005 chr9 99711795 100041862 330068 * c(LOC100499484, CTSV, GAS2L1P2, LOC100499484-C9ORF174, MFSD14C) 0.221365407956441 4 0.205586153878773 0.839765410712317 139 0.455849214328305 4 3 1 -6.84584556256127 LTS-005 chr9 100041863 100043725 1863 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 1.043 1 NA NA NA NA NA LTS-005 chr9 100043726 100116833 73108 * c(CCDC180, LOC100499484, LOC100499484-C9ORF174) 0.462648127793297 10 0.019356308187944 1.09066137310799 174 0.350689474607984 4 2 2 -10.7723379872748 LTS-005 chr9 100116834 100132364 15531 * c(CCDC180, LOC100499484-C9ORF174) 0 1 NA 1.1489891175138 47 0.335887523297789 4 4 0 -5.76484347551096 LTS-005 chr9 100132365 100459660 327296 * c(CCDC180, TSTD2, TDRD7, LOC286359, NCBP1, LOC100499484-C9ORF174, TMOD1, XPA) 0.399196838726711 7 0.165949217705727 1.06870290377176 514 0.263217104189248 4 2 2 -6.73500945105038 LTS-005 chr9 100459661 100615507 155847 * XPA NA 0 NA 1.816 1 NA NA NA NA NA LTS-005 chr9 100615508 103349484 2733977 * c(MSANTD3-TMEFF1, NAMA, ANP32B, SEC61B, COL15A1, ANKS6, FOXE1, ERP44, INVS, MURC, STX17-AS1, TRMO, NANS, TEX10, STX17, TBC1D2, HEMGN, TGFBR1, CORO2A, GALNT12, NR4A3, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.327253731001772 68 0.0913935942468568 1.41449204827201 2279 0.441462924633643 6 4 2 -6.7967460602894 LTS-005 chr9 103349485 114145639 10796155 * c(MIR548Q, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, KIAA0368, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, NA NA NA NA NA NA NA NA NA LTS-005 IKBKAP, CTNNAL1, KLF4) 0.299754028576871 143 0.119155648836554 1.51228595960629 5253 2.15962200812659 7 5 2 -6.76421693296303 LTS-005 NA NA NA NA LTS-005 chr9 114145640 114146701 1062 * KIAA0368 NA 0 NA 1.134 1 NA NA NA NA NA LTS-005 chr9 114146702 115613324 1466623 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, GNG10, SNX30, DNAJC25, DNAJC25-GNG10, INIP, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.319821354470004 42 0.115105213698918 1.37718653537179 1501 0.357581007634148 6 4 2 -6.82696404399385 LTS-005 chr9 115613325 115626559 13235 * SNX30 NA 0 NA 2.011 1 NA NA NA NA NA LTS-005 chr9 115626560 117074810 1448251 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.314047855922079 84 0.0967902984605158 1.50206246344316 2235 0.641191789857415 6 4 2 -6.78232591173432 LTS-005 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.892 1 NA NA NA NA NA LTS-005 chr9 117085363 117092741 7379 * c(ORM1, ORM2) 0.309447863689362 2 0.342239682094289 0.706624913155432 62 0.219604897966779 3 2 1 -6.74497838980667 LTS-005 chr9 117092742 123171654 6078913 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.329805934464882 53 0.0697601478590596 1.54056071230059 1714 0.384324481300703 6 4 2 -6.75256626238009 LTS-005 chr9 123171655 123173535 1881 * CDK5RAP2 NA 0 NA 1.235 1 NA NA NA NA NA LTS-005 chr9 123173536 127215772 4042237 * c(LOC100129034, LOC100288842, MIR4478, ZBTB6, NEK6, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, MEGF9, STOM, RABGAP1, PSMD5-AS1, MORN5, OR1L4, PHF19, FBXW2, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GPR21, CRB2, GSN, ADGRD2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, NDUFA8, PDCL, RAB14, RC3H2, STRBP, CDK5RAP2, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, SNORD90, MIR601, TRAF1, C5, MIR600HG, MRRF, RBM18, NA NA NA NA NA NA NA NA NA LTS-005 LHX2) 0.309143025215706 124 0.0954004119050862 1.46181901580866 4295 0.532458131161231 6 4 2 -6.81839677324283 LTS-005 NA NA NA NA LTS-005 chr9 127215773 127216762 990 * ADGRD2 0 1 NA 1.63792122194777 13 1.32773274554398 7 7 0 -5.76441175841136 LTS-005 chr9 127216763 127302514 85752 * c(NR5A1, NR6A1, ADGRD2) 0.181529741783467 12 0.168453932197284 1.51544069317791 304 0.854947365251833 7 6 1 -6.73524810620988 LTS-005 chr9 127302515 127495508 192994 * c(MIR181A2HG, NR6A1, MIR181A2, MIR181B2) 0.278 1 NA 1.29570701798707 31 0.408751277003036 5 5 0 -5.76441178817703 LTS-005 chr9 127495509 131482159 3986651 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, SLC27A4, RPL35, SLC25A25, PTRH1, PIP5KL1, TTC16, OLFML2A, DNM1, ENG, AK1, NAIF1, ZBTB43, ANGPTL2, FPGS, CIZ1, GAPVD1, NR6A1, SNORA65, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA1, GOLGA2, SCAI, CFAP157, PKN3, SLC2A8, ST6GALNAC6, HSPA5, SWI5, PTGES2-AS1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR199B, MIR219A2, ODF2, PBX3, COQ4, NA NA NA NA NA NA NA NA NA LTS-005 CERCAM, PPP6C, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, ZNF79, C9orf16, MAPKAP1, PTGES2, URM1, ARPC5L, GARNL3, DPM2, MVB12B, WDR34, LRSAM1, RALGPS1) 0.312112447641638 145 0.106865353746748 1.44263390228981 5720 0.491503740715414 6 4 2 -6.8104232208504 LTS-005 NA NA NA NA LTS-005 chr9 131482160 131483248 1089 * c(PKN3, ZDHHC12) 0 1 NA 1.54889651583793 25 0.591356421007388 6 6 0 -5.76441052295841 LTS-005 chr9 131483249 131571768 88520 * c(LOC100506100, ZER1, TBC1D13, ZDHHC12) 0.178100005222611 9 0.16816418894772 1.48125622643163 252 0.701155681183342 7 6 1 -6.73626219107584 LTS-005 chr9 131571769 131572027 259 * TBC1D13 0.302 1 NA 1.97990264326625 7 1.3352996453445 8 8 0 -5.76441013516692 LTS-005 chr9 131572028 132565719 993692 * c(LINC00963, CRAT, ASB6, ENDOG, DOLK, NUP188, PHYHD1, TOR1B, NTMT1, C9orf50, IER5L, C9orf106, PRRX2, SPOUT1, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, MIGA2, KYAT1, PTGES) 0.312279795827709 35 0.107051248231392 1.45936559863831 1440 0.481537870330173 6 4 2 -6.78337629893543 LTS-005 chr9 132565720 132566360 641 * TOR1B NA 0 NA 0.959 1 NA NA NA NA NA LTS-005 chr9 132566361 132635640 69280 * c(USP20, TOR1A, TOR1B, C9orf78) 0 1 NA 1.01006435500593 241 0.202670070140036 4 4 0 -5.7676310311756 LTS-005 chr9 132635641 132643729 8089 * USP20 0.44 1 NA 1.06067502319626 68 0.204369444491995 4 4 0 -5.76441673936903 LTS-005 chr9 132643730 132962869 319140 * c(USP20, FNBP1, NCS1, GPR107) 0.446815672370788 17 0.054403314129153 0.97751997755388 433 0.284335321302375 4 2 2 -7.35014664616057 LTS-005 chr9 132962870 133260006 297137 * NCS1 0 1 NA 1.16290870469813 185 0.36655309258377 4 4 0 -5.77386485155187 LTS-005 chr9 133260007 133280501 20495 * character(0) 0.341282715131648 12 0.208717494293704 1.17778450514838 120 0.677303911073295 6 4 2 -6.73483695916786 LTS-005 chr9 133280502 133283079 2578 * character(0) 0.443 1 NA 1.0206583803635 11 0.281866022332339 4 4 0 -5.76445131027679 LTS-005 chr9 133283080 133710246 427167 * c(LOC100272217, EXOSC2, ABL1, ASS1, PRDM12, FUBP3) 0.459743150020084 15 0.0424103536325517 1.06434978977613 453 0.254002762097228 4 2 2 -8.04031679342851 LTS-005 chr9 133710247 133710917 671 * ABL1 NA 0 NA 0.997776365223712 7 0.352820742290581 4 NA NA -5.76442536346726 LTS-005 chr9 133710918 133729382 18465 * ABL1 NA 0 NA 0.552 1 NA NA NA NA NA LTS-005 chr9 133729383 133760617 31235 * ABL1 0.144 1 NA 0.566209949834244 81 0.137226763307677 2 2 0 -5.77009550680472 LTS-005 chr9 133760618 134399356 638739 * c(LAMC3, POMT1, ABL1, SNORD62A, FAM78A, QRFP, NUP214, AIF1L, UCK1, PRRC2B, PLPP7, FIBCD1) 0.119324991040471 63 0.0704938471675313 0.628957309154591 1344 0.306445959232942 2 2 0 -6.74333254004647 LTS-005 chr9 134399357 134406047 6691 * UCK1 NA 0 NA 0.650835334122951 55 0.0855789473466239 2 NA NA -5.76663129921141 LTS-005 chr9 134406048 134431436 25389 * UCK1 NA 0 NA 0.99 1 NA NA NA NA NA LTS-005 chr9 134431437 134433611 2175 * character(0) 0.452 1 NA 1.14256631987002 7 0.401570666259377 4 4 0 -5.76444626319122 LTS-005 chr9 134433612 135821182 1387571 * c(SPACA9, AK8, SETX, RAPGEF1, CFAP77, BARHL1, DDX31, TSC1, TTF1, NTNG2, GTF3C4, MED27) 0.452109163126884 35 0.0836003699079107 0.998603635845805 1581 0.823654175167843 4 2 2 -7.05604818618997 LTS-005 chr9 135821183 135861950 40768 * GFI1B NA 0 NA 1.183 1 NA NA NA NA NA LTS-005 chr9 135861951 136208193 346243 * c(CEL, CELP, GBGT1, ABO, OBP2B, RALGDS, MED22, SURF6, GFI1B, GTF3C5) 0.45073175931969 29 0.089327481856248 1.06582163078319 589 0.334170447894425 4 2 2 -7.0011279975039 LTS-005 chr9 136208194 136210011 1818 * MED22 0 1 NA 1.09862165475666 37 0.696269839350513 4 4 0 -5.7644118490948 LTS-005 chr9 136210012 136570061 360050 * c(ADAMTS13, CACFD1, SLC2A6, DBH-AS1, DBH, STKLD1, SARDH, SNORD36C, SNORD36B, SNORD36A, SNORD24, TMEM8C, REXO4, RPL7A, FAM163B, SURF1, SURF2, SURF4, MED22, ADAMTSL2) 0.325040531660257 30 0.201498435577624 1.08130705559608 1072 0.386652571853398 4 3 1 -6.7561784099345 LTS-005 chr9 136570062 136573411 3350 * SARDH 0.46 1 NA 1.22104681079045 5 0.552836956072946 5 5 0 -5.76443451271865 LTS-005 chr9 136573412 138379059 1805648 * c(RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, WDR5, COL5A1, C9orf62, SARDH, FCN1, FCN2, LINC00094, LOC401557, RXRA, VAV2, BRD3, PPP1R26) 0.446365086415313 65 0.0393048673341336 1.08126851804234 1326 0.691057781494148 4 2 2 -7.77734324427785 LTS-005 chr9 138379060 138379153 94 * PPP1R26 0.017 1 NA 1.52075826019814 3 1.52570672149008 6 6 0 -5.76441013501812 LTS-005 chr9 138379154 138661804 282651 * c(LINC01502, C9orf116, OBP2A, GLT6D1, LCN9, LCN1, SOHLH1, PAEP, MRPS2, KCNT1, PPP1R26) 0.385912608549838 16 0.189840623945456 1.0949812863913 408 0.526274136280056 4 2 2 -6.73362517735267 LTS-005 chr9 138661805 139996619 1334815 * c(LOC100128593, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR4673, MIR4674, MIR4479, UBAC1, AGPAT2, SDCCAG3, MAN1B1, NACC2, LCN8, FAM69B, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, LCN12, C9orf142, PHPT1, LCN15, C9orf172, LCNL1, C9orf139, MIR126, LCN10, NOTCH1, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, LHX3, CCDC183, NA NA NA NA NA NA NA NA NA LTS-005 SNHG7, TMEM141, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ENTPD2, SEC16A) 0.399132937965033 127 0.145356539875368 1.02842211947601 4055 1.28005453312851 4 2 2 -6.73629678694693 LTS-005 NA NA NA NA LTS-005 chr9 139996620 139996641 22 * MAN1B1 0.299 1 NA 2.164 1 NA NA NA NA NA LTS-005 chr9 139996642 139997791 1150 * MAN1B1 0.233189402773936 12 0.106108399404771 1.43119364101561 36 0.605825819040319 5 4 1 -6.73374317652825 LTS-005 chr9 139997792 140002220 4429 * MAN1B1 0.48 1 NA 1.04695345914709 31 0.372858943030537 4 4 0 -5.76441821335309 LTS-005 chr9 140002221 140058789 56569 * c(MAN1B1, GRIN1, DPP7) 0.454103028358859 9 0.0511560792520737 0.980485979981245 207 0.23766774968864 4 2 2 -7.56436966706696 LTS-005 chr9 140058790 140064549 5760 * c(MIR3621, GRIN1, LRRC26) 0 1 NA 1.02860092036619 77 0.230457769063968 4 4 0 -5.76450529818548 LTS-005 chr9 140064550 140140236 75687 * c(TUBB4B, SLC34A3, NDOR1, TPRN, ANAPC2, CYSRT1, FAM166A, RNF224, RNF208, SSNA1, TMEM203) 0.350300666879642 12 0.203275656250921 1.04482819038961 486 0.353845362889382 3 2 1 -6.750343787261 LTS-005 chr9 140140237 140146956 6720 * c(STPG3-AS1, FAM166A, STPG3) 0.491 1 NA 0.988841258743265 19 0.0929818255523139 4 4 0 -5.76722154638965 LTS-005 chr9 140146957 140317991 171035 * c(STPG3-AS1, NOXA1, NELFB, STPG3, NRARP, TOR4A, EXD3) 0.472435798260891 22 0.0168142384519375 1.00831779284035 380 0.270478267574508 4 2 2 -12.0354384040896 LTS-005 chr9 140317992 140327487 9496 * NOXA1 0 1 NA 1.11633057504508 37 0.39149429789626 4 4 0 -5.76448079922572 LTS-005 chr9 140327488 141071755 744268 * c(NOXA1, ZMYND19, NSMF, PNPLA7, ENTPD8, EHMT1-IT1, TUBBP5, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.364474491749752 24 0.190719290650125 1.01466010978368 1117 0.350912944793383 4 2 2 -6.75322620676159 LTS-005 chr9 141071756 141071759 4 * TUBBP5 NA 0 NA 0.924 1 NA NA NA NA NA LTS-005 chr10 94832 95353 522 * TUBB8 0.491 1 NA 0.985456126869822 7 0.120506866036358 4 4 0 -5.76455169823951 LTS-005 chr10 95354 1421735 1326382 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, LINC00200, PRR26, IDI2-AS1, IDI2) 0.420805552279064 36 0.131068308859547 1.06941159225752 1159 0.29773683760233 4 2 2 -6.76671797994483 LTS-005 chr10 1421736 1436969 15234 * ADARB2 NA 0 NA 0.872 1 NA NA NA NA NA LTS-005 chr10 1436970 7604354 6167385 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, NET1, ADARB2, PITRM1, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, GDI2, LINC00700, LINC00705, AKR1C8P, IL2RA, IL15RA, AKR1C6P, LINC00701, LOC399715, PRKCQ-AS1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, PRKCQ, SFMBT2, ADARB2-AS1, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, FBXO18, RBM17, AKR1C3) 0.435450212659626 130 0.099387562886558 0.990429212039084 2661 0.361014600845848 4 2 2 -7.01766800976636 LTS-005 chr10 7604355 7614229 9875 * ITIH5 0.439 1 NA 1.00990819083435 43 0.253034826609496 4 4 0 -5.7647063962067 LTS-005 chr10 7614230 7791486 177257 * c(ITIH2, ITIH5) 0.263721525350171 9 0.254214858819158 1.06517975716838 206 0.663073806193802 4 3 1 -6.73745564112131 LTS-005 chr10 7791487 7820834 29348 * KIN 0.457 1 NA 0.890005665074313 57 0.191381097057094 3 3 0 -5.76603751261285 LTS-005 chr10 7820835 11893971 4073137 * c(CELF2, SFTA1P, PROSER2-AS1, KIN, LINC00710, PROSER2, GATA3, GATA3-AS1, CELF2-AS2, ATP5C1, ECHDC3, TAF3, USP6NL) 0.465847242816413 16 0.0311980234416648 1.01925560629744 764 0.50477066804044 4 2 2 -9.10979050902469 LTS-005 chr10 11893972 11911808 17837 * c(PROSER2-AS1, PROSER2) 0 1 NA 1.07225516525229 21 0.359272061654833 4 4 0 -5.76441104793656 LTS-005 chr10 11911809 12163741 251933 * c(PROSER2-AS1, PROSER2, UPF2, DHTKD1) 0.282859146852761 9 0.218954333138214 0.970468980865244 305 0.330684892786948 4 3 1 -6.74594469471077 LTS-005 chr10 12163742 12171740 7999 * c(SEC61A2, DHTKD1) 0.472 1 NA 0.95111193503735 29 0.289333483254219 4 4 0 -5.76518896379978 LTS-005 chr10 12171741 17216556 5044816 * c(PPIAP30, MIR1265, MIR4480, OPTN, RPP38, NUDT5, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, NA, C1QL3, ACBD7, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, FRMD4A, CAMK1D, RSU1, DCLRE1C, MEIG1, SUV39H2, FAM188A, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, CDC123, PTER, NMT2) 0.424104849497493 99 0.120722926336759 0.980226537401181 3362 0.349926556068998 4 2 2 -6.96061901999869 LTS-005 chr10 17216557 17401443 184887 * c(TRDMT1, ST8SIA6, VIM) 0 1 NA 0.943350641356854 131 0.19336092533313 3 3 0 -5.80434278617593 LTS-005 chr10 17401444 17813397 411954 * c(ST8SIA6-AS1, ST8SIA6, TMEM236, STAM, HACD1) 0.43226382423238 3 0.0285715476187996 0.990341118798956 159 0.276172294870619 4 2 2 -7.85532871233796 LTS-005 chr10 17813398 17839549 26152 * TMEM236 0 1 NA 0.596 1 NA NA NA NA NA LTS-005 chr10 17839550 17898391 58842 * c(MRC1, NA, TMEM236) NA 0 NA 0.516060311319885 44 0.342960423385056 2 NA NA -5.77290606441117 LTS-005 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 1.723 1 NA NA NA NA NA LTS-005 chr10 17905571 18089682 184112 * c(MRC1, NA, TMEM236) 0.247812375051513 5 0.243745153797978 1.00165175616474 81 0.779869693729363 5 4 1 -6.74640835094044 LTS-005 chr10 18089683 18242311 152629 * c(SLC39A12, MRC1, NA, TMEM236) 0.431 1 NA 0.935283271975706 35 0.585123178872433 3 3 0 -5.76751750550902 LTS-005 chr10 18242312 23607192 5364881 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, DNAJC1, BMI1, CACNB2, MLLT10, PLXDC2, SPAG6) 0.432633998455207 62 0.116975258065418 1.04010354864524 2201 0.356599257367142 4 2 2 -6.83149189105371 LTS-005 chr10 23607193 23728728 121536 * c(OTUD1, C10orf67) 0 1 NA 1.0713455640384 52 0.361597346541206 4 4 0 -5.76441353794743 LTS-005 chr10 23728729 27340210 3611482 * c(ABI1, GPR158-AS1, ENKUR, OTUD1, ANKRD26, PDSS1, GAD2, LINC00202-1, MYO3A, APBB1IP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, LINC00264, MIR603, LINC00202-2, THNSL1) 0.347853390562702 39 0.208142910004533 1.04369707851657 1740 0.34345324505547 4 2 2 -6.76742097259367 LTS-005 chr10 27340211 27368126 27916 * ANKRD26 0.497 1 NA 1.06754943115535 39 0.395005160628411 4 4 0 -5.76441025970354 LTS-005 chr10 27368127 32742256 5374130 * c(MIR938, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, MPP7, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, BAMBI, MKX, PTCHD3, KIF5B, LRRC37A6P, PTCHD3P1, WAC, ARMC4, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, EPC1, LYZL1, MASTL, ACBD5, ARHGAP12) 0.451780122664653 76 0.0378660334762973 1.00072120033017 2472 0.625537251907525 4 2 2 -8.06028216175207 LTS-005 chr10 32742257 32751901 9645 * NA 0.409 1 NA 1.00874357980398 16 0.225043069951806 4 4 0 -5.76479102150533 LTS-005 chr10 32751902 33190285 438384 * c(NA, ITGB1, CCDC7) 0.287834203471915 9 0.230049451205605 1.02903948546476 211 0.549664209060162 4 3 1 -6.73433346096425 LTS-005 chr10 33190286 33190567 282 * ITGB1 0.46 1 NA 1.24259308000129 9 1.17525129700465 5 5 0 -5.76441036457849 LTS-005 chr10 33190568 35338699 2148132 * c(LINC00838, ITGB1, PARD3, CUL2, NRP1) 0.470869542924148 18 0.0219504045848341 1.00575780738832 618 0.24512842293425 4 2 2 -10.7661688816464 LTS-005 chr10 35338700 35349758 11059 * CUL2 0 1 NA 1.17570374159297 7 1.0855777263743 4 4 0 -5.76446139687828 LTS-005 chr10 35349759 38672144 3322386 * c(LOC100129055, MTRNR2L7, ZNF33BP1, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, SEPT7P9, ZNF248, ZNF33A, ZNF37A, FZD8, CUL2, ANKRD30A) 0.365549775051844 27 0.188689474928301 1.0110370732381 1011 0.302092464481802 4 2 2 -6.8092775033265 LTS-005 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 1.00114334603043 5 0.263465367743087 4 NA NA -5.76692441211532 LTS-005 chr10 42379860 42379869 10 * character(0) 0.333 1 NA 0.055 1 NA NA NA NA NA LTS-005 chr10 42379870 42941686 561817 * LOC441666 0.343192092758429 6 0.0804735981549228 0.986848310503973 41 1.06998140170753 3 2 1 -6.74771317043783 LTS-005 chr10 42941687 43085557 143871 * c(ZNF37BP, ZNF33B, LINC00839) 0.46040960840062 3 0.0277908857961263 1.02353550846824 53 0.411625948678584 4 2 2 -9.22761414066811 LTS-005 chr10 43085558 43086054 497 * ZNF33B 0.486 1 NA 1.02426207486157 9 0.165757352778089 4 4 0 -5.76442967377583 LTS-005 chr10 43086055 46998782 3912728 * c(C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, ZFAND4, GPRIN2, BMS1) 0.415854387843659 72 0.117796055122843 1.01692938781455 1830 0.32365408866335 4 2 2 -6.8173072395654 LTS-005 chr10 46998783 46998795 13 * c(PTPN20, GLUD1P7, NA, NA, GPRIN2) 0.448 1 NA 1.76 1 NA NA NA NA NA LTS-005 chr10 46998796 47000547 1752 * c(PTPN20, GLUD1P7, NA, NA, GPRIN2) 0.378892658219334 21 0.106969109915856 1.41871674907083 57 0.982923132338034 5 3 2 -6.73304070146549 LTS-005 chr10 47000548 47087501 86954 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, GPRIN2) 0.239 1 NA 1.16595519038865 19 0.524185829287411 4 4 0 -5.76585010332304 LTS-005 chr10 47087502 47701299 613798 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.19885078522621 5 0.197267077841185 1.19355309685914 110 0.497824766691999 5 4 1 -6.76553944890743 LTS-005 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 0.623 1 NA NA NA NA NA LTS-005 chr10 47755982 48033122 277141 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.267370364992552 2 0.117379725676967 0.407811021844578 49 0.263241183932848 1 1 0 -6.92498335183857 LTS-005 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.188 1 NA NA NA NA NA LTS-005 chr10 48054940 49643257 1588318 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, RBP3, NA, NA, FRMPD2B) 0.184942218670567 8 0.226422448092056 1.16522069241688 478 0.56200214667803 5 4 1 -6.79913089370918 LTS-005 chr10 49643258 49643570 313 * NA 0.495 1 NA 1.27171849270151 9 0.209814468307386 5 5 0 -5.76441187530288 LTS-005 chr10 49643571 50154879 511309 * c(LRRC18, NA, WDFY4, ARHGAP22) 0.420777763725483 31 0.143192989556279 1.12244664145172 597 0.517156338660562 4 2 2 -6.76398689870639 LTS-005 chr10 50154880 50171889 17010 * c(NA, WDFY4) 0 1 NA 0.941340226936579 15 0.530605377532745 3 3 0 -5.76488338277419 LTS-005 chr10 50171890 50190538 18649 * c(NA, WDFY4) 0.347159407721615 7 0.226707384297993 1.20001852992823 45 0.508469534659421 6 4 2 -6.73587981661027 LTS-005 chr10 50190539 50190610 72 * c(NA, WDFY4) NA 0 NA 0.809 1 NA NA NA NA NA LTS-005 chr10 50190611 50903078 712468 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, NA, WDFY4, DRGX, SLC18A3) 0.328003645945614 24 0.202223254264235 1.03908239449084 865 0.455956598918592 4 3 1 -6.76097302239573 LTS-005 chr10 50903079 50903527 449 * c(C10orf53, NA) 0.494 1 NA 0.855338862718777 13 0.389127574492954 3 3 0 -5.76441073954695 LTS-005 chr10 50903528 54525957 3622430 * c(TIMM23, PRKG1-AS1, DKK1, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, OGDHL, PRKG1, ASAH2, AGAP7P, ASAH2B, MIR605, NA, PARGP1, NCOA4, PARG) 0.438118124647948 41 0.105889622697987 1.05400504564282 1097 0.351677369228143 4 2 2 -6.85947768149804 LTS-005 chr10 54525958 54525984 27 * MBL2 0.482 1 NA 2.676 1 NA NA NA NA NA LTS-005 chr10 54525985 55580991 1055007 * c(MBL2, PCDH15) 0.412533565823534 14 0.127304256120421 1.30476145738286 220 0.562724030863043 5 3 2 -6.77418045448569 LTS-005 chr10 55580992 70534744 14953753 * c(MIR1296, MTRNR2L5, MIR3924, MRLN, MIR548AV, ZWINT, DNA2, EGR2, C10orf107, TMEM26, RTKN2, ATOH7, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, SIRT1, IPMK, HERC4, LINC01553, ANK3, CTNNA3, NRBF2, ANXA2P3, HNRNPH3, LRRTM3, RUFY2, CCAR1, CISD1, DNAJC12, PBLD, PCDH15, SNORD98, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, TET1, SLC25A16, ARID5B, PHYHIPL, MYPN, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.424696138364831 115 0.114377299279136 1.09347250780204 4946 0.295929597953497 4 2 2 -6.84211171876733 LTS-005 chr10 70534745 70545815 11071 * CCAR1 0 1 NA 0.935239638736892 6 0.428185785222568 3 3 0 -5.76483081783169 LTS-005 chr10 70545816 71005786 459971 * c(STOX1, KIF1BP, SRGN, CCAR1, SUPV3L1, DDX50, HKDC1, DDX21, VPS26A) 0.249916663000747 16 0.228249863088677 1.08077894590669 653 0.484231890186447 4 3 1 -6.7477715524272 LTS-005 chr10 71005787 71008250 2464 * HKDC1 0.383 1 NA 1.0589819719409 15 0.804099656226053 4 4 0 -5.76441032546471 LTS-005 chr10 71008251 71243591 235341 * c(TSPAN15, HK1, TACR2, HKDC1) 0.474518716862363 17 0.0210685156795911 1.06863401126165 295 0.277605623103269 4 2 2 -11.0697852658906 LTS-005 chr10 71243592 71243596 5 * TSPAN15 NA 0 NA 1.169 1 NA NA NA NA NA LTS-005 chr10 71243597 72059082 815486 * c(COL13A1, C10orf35, TYSND1, TSPAN15, NEUROG3, PPA1, LRRC20, H2AFY2, SAR1A, NPFFR1, AIFM2) 0.430544300756594 25 0.0935265915840695 1.20580674374521 770 0.327538189055439 4 2 2 -6.91125608549365 LTS-005 chr10 72059083 72059094 12 * LRRC20 0.447 1 NA 1.321 1 NA NA NA NA NA LTS-005 chr10 72059095 72326747 267653 * c(EIF4EBP2, PALD1, NODAL, LRRC20) 0.230535318652405 9 0.239257416000238 1.18028202031395 375 0.626016437512347 5 4 1 -6.73712547690086 LTS-005 chr10 72326748 72357327 30580 * c(PALD1, PRF1) 0.465 1 NA 1.18899173090727 37 0.21279861900927 5 5 0 -5.76751028994616 LTS-005 chr10 72357328 73575659 1218332 * c(ADAMTS14, UNC5B, TBATA, C10orf105, PCBD1, SLC29A3, PRF1, CDH23, C10orf54, UNC5B-AS1, SGPL1) 0.405424444162202 53 0.1580937101536 1.18297944481637 1391 0.41474409345888 4 2 2 -6.78252994801283 LTS-005 chr10 73575660 77158387 3582728 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, ZNF503, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.401000165164574 61 0.126242491525899 1.10073400203636 3688 0.289287241200243 4 2 2 -6.76018411215052 LTS-005 chr10 77158388 77158484 97 * ZNF503 NA 0 NA 0.738 1 NA NA NA NA NA LTS-005 chr10 77158485 77542541 384057 * c(ZNF503-AS2, C10orf11, ZNF503) 0.184595557045214 4 0.193018781469576 0.628317092815034 120 0.135871333723236 2 2 0 -6.7964214710198 LTS-005 chr10 77542542 81354940 3812399 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, EIF5AL1, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, SFTPA2, C10orf11, DLG5) 0.389633743657932 45 0.147173092621984 1.18735101205425 1432 0.315719042975339 5 3 2 -6.91210201297995 LTS-005 chr10 81354941 81371037 16097 * SFTPA1 NA 0 NA 0.711 1 NA NA NA NA NA LTS-005 chr10 81371038 81371554 517 * SFTPA1 0.354390471526515 2 0.164048773235279 0.834466235204611 10 0.772747939355245 3 2 1 -6.73316812341039 LTS-005 chr10 81371555 81372166 612 * SFTPA1 0.165 1 NA 1.08486799444389 11 0.445000408579996 4 4 0 -5.76441055192331 LTS-005 chr10 81372167 88446985 7074819 * c(BMS1P21, GRID1-AS1, NRG3, LDB3, DYDC1, LINC00858, TMEM254-AS1, PLAC9, WAPL, LRIT1, GHITM, GRID1, ANXA11, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00857, MIR346, CCSER2, RGR, LOC642361, SFTPD, BEND3P3, SFTPA1, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P, CDHR1, OPN4) 0.126232872426364 70 0.0905367946203323 0.633509385613295 2162 0.317196042753567 2 2 0 -6.78931847174252 LTS-005 chr10 88446986 88469831 22846 * LDB3 0.212 1 NA 0.649702126168787 41 0.170664819127449 2 2 0 -5.76621447116851 LTS-005 chr10 88469832 89574680 1104849 * c(MIR4678, ADIRF, LDB3, AGAP11, GLUD1, LINC00863, FAM35A, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, PAPSS2, MINPP1) 0.123631905437424 16 0.0629258492195377 0.61598018796881 818 0.168149289402923 2 2 0 -6.73630644784253 LTS-005 chr10 89574681 89621670 46990 * c(KLLN, CFL1P1, ATAD1) NA 0 NA 0.192 1 NA NA NA NA NA LTS-005 chr10 89621671 89653782 32112 * c(KLLN, PTEN) 0.333 1 NA 0.203634931655873 41 0.0786372654165639 0 0 0 -6.01236821950918 LTS-005 chr10 89653783 95259979 5606197 * c(HECTD2-AS1, FAS-AS1, MARK2P9, MIR4679-1, MIR4679-2, LINC00502, RPP30, ANKRD22, NUDT9P1, LIPJ, HECTD2, FGFBP3, CYP26A1, CPEB3, IFIT5, MYOF, ANKRD1, FLJ37201, HHEX, HTR7, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, EXOC6, MARCH5, PPP1R3C, CEP55, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, LINC00865, TNKS2, PCGF5, LIPF, CH25H, BTAF1, KIF20B) 0.14107075556948 62 0.0574143834115439 0.614032133089607 4026 0.210136912714407 2 2 0 -6.77208717963502 LTS-005 chr10 95259980 95266683 6704 * CEP55 0.109 1 NA 0.590212891182901 11 0.200225418420884 2 2 0 -5.76452679281175 LTS-005 chr10 95266684 107025032 11758349 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4482, MIR4685, MIR5692C2, ACTR1A, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, NA NA NA NA NA NA NA NA NA LTS-005 CYP17A1, NKX2-3, SLC35G1, CFAP58, DNTT, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, PIPSL, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, HELLS, KCNIP2, TLX1, HPS1, FFAR4, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, CCNJ, CNNM2, WBP1L, CRTAC1, CEP55, CWF19L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, GSTO1, ENTPD1, SH3PXD2A, SLK, ZNF518A) 0.117086426905835 310 0.062958938741284 0.61054733613973 14095 0.225306119165981 2 2 0 -6.74731729450948 LTS-005 NA NA NA NA LTS-005 chr10 108336965 108489953 152989 * SORCS1 0.442842775926404 3 0.0255408170059874 0.173018859915574 120 0.0511685405089409 0 0 0 -9.09371444379019 LTS-005 chr10 108489954 108521279 31326 * SORCS1 NA 0 NA 0.68 1 NA NA NA NA NA LTS-005 chr10 108521280 116853570 8332291 * c(MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, SMNDC1, SORCS1, ADD3, TRUB1, VTI1A, ADRA2A, ADRB1, DUSP5, ATRNL1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, TCF7L2, TECTB, XPNPEP1, PLEKHS1, SHOC2, CASP7, AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.123872367454208 99 0.0542631703018349 0.607395153136427 3957 0.253117112348269 2 2 0 -6.737067572662 LTS-005 chr10 116853571 119308575 2455005 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.113532634163492 30 0.0671170276628729 0.675882786620712 1550 0.217071453755024 2 2 0 -7.06196412578708 LTS-005 chr10 119308576 122263014 2954439 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.13611323406407 27 0.0381858179846484 0.592792775425465 1625 0.6571780970205 2 2 0 -6.77205450840864 LTS-005 chr10 122263015 122263045 31 * PLPP4 0 1 NA 2.545 1 NA NA NA NA NA LTS-005 chr10 122263046 126630704 4367659 * c(MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, CPXM2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.112871754863019 66 0.0683362197355028 0.643873322778855 2868 0.226702591554701 2 2 0 -6.89738262167212 LTS-005 chr10 126630705 126670356 39652 * ZRANB1 0.192 1 NA 0.638613930381807 43 0.11991751040747 2 2 0 -5.76771624323358 LTS-005 chr10 126670357 126714714 44358 * c(CTBP2, ZRANB1) 0.355213024101727 9 0.0961489007275232 0.60729472189652 163 0.213132316962534 3 2 1 -6.7946336078356 LTS-005 chr10 126714715 126715140 426 * CTBP2 0.17 1 NA 0.710332693037145 9 0.227742178789964 2 2 0 -5.76452245406097 LTS-005 chr10 126715141 134693137 7977997 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, C10orf90, MMP21, CTAGE7P, CLRN3, CTBP2, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, INPP5A, TEX36, LINC00959, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, CFAP46, DHX32, PPP2R2D, BCCIP, PTPRE, NPS, FAM196A, BNIP3, UROS, LRRC27, ADAM12, NKX6-2, FANK1) 0.139680969043251 91 0.0731216024329934 0.650267647676202 3328 0.245851413198077 2 2 0 -7.04867704287192 LTS-005 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.266 1 NA NA NA NA NA LTS-005 chr10 134694406 134756359 61954 * CFAP46 0.0204662366605989 8 0.060560330014198 0.364303762420652 173 0.392073421377989 6 6 0 -7.34651527697656 LTS-005 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 0.903 1 NA NA NA NA NA LTS-005 chr10 134884462 135237240 352779 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.126833446884354 39 0.0656508780350623 0.647429655505681 1122 0.336616297800382 2 2 0 -6.7393996126014 LTS-005 chr10 135237241 135267393 30153 * SPRN NA 0 NA 0.962 1 NA NA NA NA NA LTS-005 chr10 135267394 135342014 74621 * c(CYP2E1, SCART1) 0.215761949258581 9 0.206304386768677 1.20237908234256 135 0.661085024751165 5 4 1 -6.73986025117668 LTS-005 chr10 135342015 135352490 10476 * CYP2E1 0.459 1 NA 1.17917823380011 41 0.21029099466935 5 5 0 -5.76571374990282 LTS-005 chr10 135352491 135381823 29333 * c(CYP2E1, SPRNP1, SYCE1) 0.497563130426433 2 0.00282842712474619 1.11673093486608 100 0.314925342443461 4 2 2 -23.7642676629455 LTS-005 chr10 135381824 135381888 65 * c(SPRNP1, SYCE1) NA 0 NA 0.969 1 NA NA NA NA NA LTS-005 chr10 135381889 135473026 91138 * c(SPRNP1, FRG2B, SYCE1) 0.344033265204724 7 0.0400321299529694 0.811690196431881 38 1.02579995637447 6 4 2 -6.75565732328664 LTS-005 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.078 1 NA NA NA NA NA LTS-005 chr11 193025 193096 72 * SCGB1C1 0.472 1 NA 0.456 1 NA NA NA NA NA LTS-005 chr11 193097 1016834 823738 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.151124955078637 95 0.0746300168678339 0.617936178805968 2973 0.367602406772042 2 2 0 -6.79655755859646 LTS-005 chr11 1016835 1016869 35 * MUC6 0.322 1 NA 0.209 1 NA NA NA NA NA LTS-005 chr11 1016870 1018196 1327 * MUC6 0.29202420538784 35 0.105120123364342 0.541535428794643 64 0.137559113375374 4 3 1 -6.75466715348952 LTS-005 chr11 1018197 1018483 287 * MUC6 0.221 1 NA 0.680517823246599 3 0.207331457654967 2 2 0 -5.76445692918651 LTS-005 chr11 1018484 1025332 6849 * MUC6 NA 0 NA 0.554763945841341 50 0.12082935175237 2 NA NA -5.76700493337408 LTS-005 chr11 1025333 1213004 187672 * c(MUC2, MUC6, MUC5B) 0.182856344844657 14 0.103682842689289 0.666746009423958 426 0.367493314684809 2 2 0 -6.90983699182057 LTS-005 chr11 1213005 1213023 19 * MUC5B 0.328 1 NA 0.685 1 NA NA NA NA NA LTS-005 chr11 1213024 1213556 533 * MUC5B 0.389926972033422 17 0.106095545174538 0.950772839698791 27 0.530958301515965 4 2 2 -6.73304892126496 LTS-005 chr11 1213557 1244534 30978 * MUC5B 0 1 NA 0.670486174303895 93 0.271726847520436 2 2 0 -5.76660613421631 LTS-005 chr11 1244535 1258295 13761 * MUC5B 0.2333621133278 15 0.142286364504156 0.753060242345649 127 0.409863667085533 5 4 1 -6.747900661823 LTS-005 chr11 1258296 1267055 8760 * MUC5B 0.086 1 NA 0.665561965308324 73 0.141881344191293 2 2 0 -5.76634249595696 LTS-005 chr11 1267056 1507971 240916 * c(TOLLIP-AS1, TOLLIP, MUC5B, MOB2, BRSK2) 0.105962931819176 12 0.0382443301402808 0.713684534900579 430 0.323901231769301 3 3 0 -6.84149282362517 LTS-005 chr11 1507972 1507976 5 * MOB2 0.015 1 NA 0.011 1 NA NA NA NA NA LTS-005 chr11 1507977 5777005 4269029 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, TRIM22, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, CTSD, DUSP8, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, H19, MRGPRG-AS1, C11orf21, TRPM5, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, KRTAP5-AS1, OR52B6, NA NA NA NA NA NA NA NA NA LTS-005 IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, TRIM6-TRIM34, NAP1L4, NUP98, SLC22A18, SLC22A18AS, UBQLN3, IGF2-AS, TRIM34, TRIM68, KCNQ1DN, MMP26, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, MOB2, CARS, TRIM5, SYT8, CD81) 0.133297126839815 220 0.0616199756484917 0.63482423235974 5002 0.27134094460644 2 2 0 -6.7914954721022 LTS-005 NA NA NA NA LTS-005 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.139 1 NA NA NA NA NA LTS-005 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 0.970417408510031 47 0.333988775728577 4 NA NA -5.76496997661177 LTS-005 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.578 1 NA NA NA NA NA LTS-005 chr11 5817708 18751866 12934159 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, USH1C, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, HPS5, PRKCDBP, SAAL1, MRGPRX3, MRGPRX4, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, SPTY2D1, TMEM86A, OR10A5, OR2AG1, DNHD1, LDHAL6A, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, NA NA NA NA NA NA NA NA NA LTS-005 SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, OR10A4, OLFML1, LOC283299, GTF2H1, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LDHA, LDHC, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PIK3C2A, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PTPN5, PPFIBP2, MICALCL, TRIM5, OR6A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.131383524917062 352 0.0619949323170582 0.615324610743058 12724 0.271759087290843 2 2 0 -6.74230027164582 LTS-005 NA NA NA NA LTS-005 chr11 18751867 18885080 133214 * PTPN5 NA 0 NA 0.670153177736396 69 0.155872629544418 2 NA NA -5.79268136194198 LTS-005 chr11 18885081 18955315 70235 * character(0) NA 0 NA 0.942 1 NA NA NA NA NA LTS-005 chr11 18955316 19076141 120826 * c(MRGPRX2, MRGPRX1) 0.442 1 NA 0.959264932292483 37 0.158427586929487 4 4 0 -5.79793224157733 LTS-005 chr11 19076142 28042522 8966381 * c(LOC100126784, CCDC179, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, MUC15, SLC5A12, ANO5, FANCF, SVIP, GAS2, LUZP2, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, E2F8, CSRP3, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.413204232896796 90 0.142881605039545 1.09235704985088 2924 0.32038002622837 4 2 2 -6.77428979876078 LTS-005 chr11 28042523 28145566 103044 * c(METTL15, MIR610, KIF18A) NA 0 NA 0.681685896566243 97 0.173638360633545 2 NA NA -5.78911322389145 LTS-005 chr11 28145567 28219080 73514 * METTL15 NA 0 NA 1.397 1 NA NA NA NA NA LTS-005 chr11 28219081 31086115 2867035 * c(DCDC5, ARL14EP, METTL15, FSHB, DCDC1, KCNA4, MPPED2) 0.443346918596984 14 0.0300465755668879 1.08078011935035 598 0.340846195450404 4 2 2 -8.21616123172255 LTS-005 chr11 31086116 31128570 42455 * c(DCDC5, DCDC1) 0 1 NA 1.1589085796965 37 0.313369642807074 4 4 0 -5.76611293154546 LTS-005 chr11 31128571 31825304 696734 * c(DCDC5, DNAJC24, IMMP1L, ELP4, DCDC1, PAX6) 0.36369895872256 19 0.186122530853274 1.04365111682567 451 0.276291135247957 4 2 2 -6.747762573984 LTS-005 chr11 31825305 31825606 302 * PAX6 0.47 1 NA 1.29049642489732 7 0.194254496791733 5 5 0 -5.76441028335865 LTS-005 chr11 31825607 46394101 14568495 * c(C11orf91, MIR670, LOC100507205, ALKBH3-AS1, LOC100507384, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, CSTF3, ELF5, EXT2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, LINC00294, COMMD9, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, LMO2, MIR129-2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, TRIM44, NAT10, SLC35C1, TCP11L1, NA NA NA NA NA NA NA NA NA LTS-005 TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, TRAF6, SEC14L1P1, WT1, PRRG4, QSER1, PRR5L, PDHX, ACCS, CAT, DGKZ, CHST1, API5, TSPAN18, CREB3L1, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59) 0.435152657648768 190 0.103560224804289 1.03166876919661 6398 0.31458898900019 4 2 2 -6.95451421488184 LTS-005 NA NA NA NA LTS-005 chr11 46394102 46394715 614 * DGKZ 0 1 NA 1.35031479455786 13 0.321494068215008 5 5 0 -5.7644157535024 LTS-005 chr11 46394716 46920974 526259 * c(MIR3160-2, MIR3160-1, LRP4-AS1, MIR4688, MIR5582, CHRM4, F2, HARBI1, ARHGAP1, LRP4, MDK, AMBRA1, SNORD67, ZNF408, DGKZ, ATG13, CKAP5) 0.249173746317882 12 0.240657480098319 1.02924400565863 1180 0.360521221780642 4 3 1 -6.75014830523608 LTS-005 chr11 46920975 46977882 56908 * c(LRP4, C11orf49) 0.398 1 NA 1.0252778137718 41 0.34237612500817 4 4 0 -5.76491130148987 LTS-005 chr11 46977883 47353311 375429 * c(NR1H3, DDB2, PACSIN3, MYBPC3, ACP2, C11orf49, ARFGAP2, MADD) 0.468278184739577 23 0.0221438880654714 1.00549692993155 693 0.248223103371817 4 2 2 -10.5226421099992 LTS-005 chr11 47353312 47354305 994 * MYBPC3 0.364 1 NA 1.06078486185941 15 0.645587381124094 4 4 0 -5.76441021369615 LTS-005 chr11 47354306 47447816 93511 * c(MYBPC3, PSMC3, SPI1, SLC39A13) 0.339022415940992 4 0.227773827879031 1.1038267119043 353 0.464236995484457 3 2 1 -6.75435726343109 LTS-005 chr11 47447817 47688127 240311 * c(CELF1, C1QTNF4, PTPMT1, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN, AGBL2) 0.218940772060844 6 0.178725954093597 0.95649533169111 476 0.456657776452278 5 4 1 -6.80268888765512 LTS-005 chr11 47688128 47701528 13401 * AGBL2 0.422 1 NA 1.03196347337658 29 0.186390963120546 4 4 0 -5.76469332002685 LTS-005 chr11 47701529 48328644 627116 * c(OR4X2, OR4B1, NUP160, FNBP4, OR4S1, OR4X1, PTPRJ, AGBL2) 0.436285841694446 15 0.122335720750027 1.0003063015943 689 0.608776869513558 4 2 2 -6.8233712971792 LTS-005 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.977680697009928 4 0.0486689497181382 4 NA NA -5.79987604904033 LTS-005 chr11 48346420 48346423 4 * character(0) 0.375 1 NA 3.017 1 NA NA NA NA NA LTS-005 chr11 48346424 48388657 42234 * c(OR4C3, OR4C45) 0.339065901283907 105 0.0976404239080944 1.74510127200925 184 1.16434409483657 6 4 2 -6.73381574010243 LTS-005 chr11 48388658 48388675 18 * character(0) NA 0 NA 1.038 1 NA NA NA NA NA LTS-005 chr11 48388676 50003025 1614350 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, TRIM64C) 0.399362880592706 14 0.122411147413089 1.07583035903007 376 0.509953075493887 4 2 2 -6.73695946306663 LTS-005 chr11 50003026 51527703 1524678 * c(OR4C46, OR4C12, LOC441601, LOC646813, OR4A5) NA 0 NA 1.00576194445158 87 0.178211234360779 4 NA NA -5.86870452746502 LTS-005 chr11 55035776 55111153 75378 * c(TRIM51HP, TRIM48, OR4A16) 0 1 NA 0.800570680097572 15 1.35401111341011 3 3 0 -5.76446629426258 LTS-005 chr11 55111154 55136500 25347 * c(OR4A16, OR4A15) NA 0 NA 0.93670450308053 29 0.18509365889078 3 NA NA -5.76971127037871 LTS-005 chr11 55136501 55321804 185304 * OR4C15 NA 0 NA 1.408 1 NA NA NA NA NA LTS-005 chr11 55321805 56143767 821963 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8U8, OR8J3, OR4P4, OR4C15, TRIM51) 0.355954660968679 28 0.146710815865987 1.15416387465225 748 0.475858077986341 4 2 2 -6.77739969372908 LTS-005 chr11 56143768 56144034 267 * OR8U8 0.452 1 NA 1.02642243097558 7 0.45308182799263 4 4 0 -5.76441140144176 LTS-005 chr11 56144035 56468416 324382 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.449499511395197 20 0.0317478138493114 1.13979820362827 261 0.467595981847477 4 2 2 -8.34699892204055 LTS-005 chr11 56468417 56468448 32 * c(OR8U8, OR9G9) 0.021 1 NA 1.49236722883801 3 0.809238119056025 6 6 0 -5.76441014935998 LTS-005 chr11 56468449 56468835 387 * c(OR8U8, OR9G9) 0.294968070349426 14 0.137465859897513 1.84244222936449 22 0.927971259257881 14 10 4 -6.73312962668708 LTS-005 chr11 56468836 56468883 48 * OR8U8 NA 0 NA 0.869 1 NA NA NA NA NA LTS-005 chr11 56468884 56756915 288032 * c(OR9G4, OR5AK2, OR8U8) 0.462 1 NA 0.998519941599836 50 0.219662844619026 4 4 0 -5.78089021003429 LTS-005 chr11 56756916 60703119 3946204 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, PTGDR2, CNTF, CTNND1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, PRPF19, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5AK2, OR5B2, OR5B12, NA NA NA NA NA NA NA NA NA LTS-005 OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, TMEM132A, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, TMEM109, CCDC86, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.430200108451201 123 0.115441258913915 1.05038581990823 4736 0.318591580016106 4 2 2 -6.81307959699119 LTS-005 NA NA NA NA LTS-005 chr11 60703120 60705448 2329 * c(SLC15A3, TMEM132A) 0 1 NA 1.11408917503895 43 0.614018480464684 4 4 0 -5.76441654368185 LTS-005 chr11 60705449 61018292 312844 * c(SLC15A3, PGA5, VPS37C, PGA3, PGA4, CD5, CD6) 0.372110823448397 13 0.185091037891337 1.06540909925012 326 0.497967461349162 4 2 2 -6.73842763813904 LTS-005 chr11 61018293 61018743 451 * PGA5 NA 0 NA 1.412 1 NA NA NA NA NA LTS-005 chr11 61018744 61081793 63050 * c(DDB1, VWCE, PGA5) 0.360385108796158 5 0.0465005376313006 1.49221340203076 215 0.29290197946042 8 5 3 -6.77626342711261 LTS-005 chr11 61081794 61573116 491323 * c(MIR4488, RPLP0P2, DDB1, CYB561A3, PPP1R32, FEN1, TKFC, DKFZP434K028, LRRC10B, FADS1, TMEM216, TMEM138, SDHAF2, MIR611, MYRF, TMEM258, DAGLA, CPSF7, SYT7) 0.380782862669921 21 0.188412743477616 1.0504845011437 1453 0.408100784544134 4 2 2 -6.73488541651581 LTS-005 chr11 61573117 61624450 51334 * c(MIR1908, FADS1, FADS2) 0.42 1 NA 1.04897275713499 153 0.242155944688516 4 4 0 -5.76459250092311 LTS-005 chr11 61624451 64521406 2896956 * c(MIR1237, HNRNPUL2-BSCL2, LOC100996455, RASGRP2, RTN3, NXF1, TAF6L, SCGB1D2, SCGB1D1, STIP1, PLA2G16, CHRM1, SLC22A9, SLC22A12, HRASLS5, COX8A, C11orf84, EEF1G, MARK2, ESRRA, LRRN4CL, HNRNPUL2, FKBP2, GANAB, SNHG1, FLRT1, FTH1, EML3, PRDX5, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, DNAJC4, INCENP, TMEM179B, SLC22A25, SLC22A10, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, NA NA NA NA NA NA NA NA NA LTS-005 KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, OTUB1, SLC22A11, GPR137, BAD, PYGM, RAB3IL1, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, VEGFB, BEST1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, INTS5, FERMT3, TRPT1, NUDT22, LGALS12, RPS6KA4, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, FADS2) 0.436285954425479 167 0.103147260076945 1.01592767287272 6289 0.329623966790878 4 2 2 -6.89392776437715 LTS-005 NA NA NA NA LTS-005 chr11 64521407 64522303 897 * PYGM 0 1 NA 1.07564234792261 17 0.920909385112474 4 4 0 -5.76441016121131 LTS-005 chr11 64522304 64601797 79494 * c(MEN1, CDC42BPG, PYGM, MAP4K2, SF1) 0.22895456436281 9 0.224764938942393 1.05090097366792 447 0.54377068851842 5 4 1 -6.7409307593732 LTS-005 chr11 64601798 64602782 985 * CDC42BPG 0.433 1 NA 1.12997025132688 15 0.379707945412687 4 4 0 -5.76442286020551 LTS-005 chr11 64602783 64809133 206351 * c(ARL2-SNX15, EHD1, BATF2, GPHA2, ATG2A, MAJIN, SAC3D1, ARL2, MIR192, MIR194-2, PPP2R5B, CDC42BPG) 0.445954235890879 22 0.102984511086908 1.02530492574984 744 0.340106214622508 4 2 2 -6.90898010226021 LTS-005 chr11 64809134 64833951 24818 * c(NAALADL1, SAC3D1) 0 1 NA 1.07551927158227 121 0.393440186086206 4 4 0 -5.76441402376523 LTS-005 chr11 64833952 65180733 346782 * c(TMEM262, CDC42EP2, CDCA5, FAU, TIGD3, POLA2, SLC25A45, SPDYC, SLC22A20, DPF2, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, CAPN1, FRMD8, SYVN1) 0.285092121571489 9 0.251574762468557 1.02695192351548 1183 0.271155769684839 4 3 1 -6.73752232537672 LTS-005 chr11 65180734 65211940 31207 * c(NEAT1, FRMD8) 0.466 1 NA 1.05058333726318 11 0.278643140952725 4 4 0 -5.7644806454924 LTS-005 chr11 65211941 66100152 888212 * c(MIR4489, MIR4690, KCNK7, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, CATSPER1, CST6, CTSW, FAM89B, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, TMEM151A, NEAT1, EFEMP2, MALAT1, PCNX3, LTBP3, MAP3K11, OVOL1, PACS1, CD248, SCYL1, RELA, KLC2, SIPA1, MUS81, FOSL1, RAB1B, C11orf68, RNASEH2C, EIF1AD, BANF1, GAL3ST3, SART1, AP5B1, FIBP, RIN1) 0.453864002999252 76 0.0792842764438704 1.0234125991029 3144 0.258259929004789 4 2 2 -7.1176575033947 LTS-005 chr11 66100153 66107674 7522 * c(BRMS1, RIN1) 0.424 1 NA 1.01978361809257 91 0.219777729320444 4 4 0 -5.76461522712574 LTS-005 chr11 66107675 67075207 967533 * c(RBM14-RBM4, DPP3, RBM14, B4GAT1, GRK2, KDM2A, PELI3, ZDHHC24, C11orf86, BRMS1, NPAS4, RHOD, SLC29A2, ANKRD13D, PC, SSH3, CCDC87, BBS1, RBM4, MRPL11, SPTBN2, LRFN4, C11orf80, RBM4B, CTSF, ACTN3, SYT12, CCS, RCE1) 0.163392917020457 9 0.221160009947549 1.05087529914364 2251 0.270803348164615 4 4 0 -6.83373425323922 LTS-005 chr11 67075208 67079640 4433 * SSH3 0.468 1 NA 1.08270027759311 45 0.18073946034348 4 4 0 -5.76442391956762 LTS-005 chr11 67079641 70279766 3200126 * c(LOC100130987, MIR548K, MIR4691, CDK2AP2, TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, CTTN, MRPL21, TPCN2, ORAOV1, ALDH3B1, ALDH3B2, FGF3, FGF4, CLCF1, NUDT8, MYEOV, GSTP1, TBX10, IGHMBP2, TBC1D10C, GPR152, DOC2GP, LRP5, NDUFV1, NDUFS8, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, ANO1, PPP6R3, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, CCND1, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, PPFIA1, FADD, AIP, ACY3, NA NA NA NA NA NA NA NA NA LTS-005 PITPNM1, TESMIN, FGF19) 0.441207679454144 96 0.108574066703455 1.03777361432831 3547 0.266019036147847 4 2 2 -6.8886089512986 LTS-005 NA NA NA NA LTS-005 chr11 70279767 70332762 52996 * c(CTTN, SHANK2) 0 1 NA 1.04768049007084 147 0.605474820278158 4 4 0 -5.76444436658379 LTS-005 chr11 70332763 70788916 456154 * c(MIR3664, SHANK2-AS1, SHANK2-AS3, SHANK2) 0.132388288979584 9 0.230846810677557 1.11788082989422 231 0.653594451808302 4 4 0 -6.77369704925448 LTS-005 chr11 70788917 70794485 5569 * SHANK2 0.444 1 NA 1.30152400765917 19 0.925648484555052 5 5 0 -5.76441016823363 LTS-005 chr11 70794486 72308765 1514280 * c(LOC100129216, LOC100133315, MIR3165, IL18BP, DHCR7, LRTOMT, SHANK2, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, KRTAP5-7, KRTAP5-11, NUMA1, PDE2A, LAMTOR1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, CLPB) 0.364362927244137 45 0.193249284238224 1.07341629345126 1581 0.362795967620659 4 2 2 -6.74342966975676 LTS-005 chr11 72308766 72309540 775 * PDE2A 0.489 1 NA 0.943021588004095 3 0.508374206007084 3 3 0 -5.76443433491661 LTS-005 chr11 72309541 74689058 2379518 * c(KCNE3, MIR4696, MIR4692, POLD3, STARD10, ARAP1, XRRA1, FAM168A, RNF169, CHRDL2, C2CD3, P4HA3, PGM2L1, DNAJB13, LIPT2, MIR139, P2RY2, P2RY6, COA4, PDE2A, PPME1, MRPL48, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1, RELT, ATG16L2, SPCS2, ARHGEF17, FCHSD2) 0.426261803203435 86 0.111063268716542 1.02761487355252 2942 0.296618304348177 4 2 2 -6.8223254033242 LTS-005 chr11 74689059 74689189 131 * SPCS2 0 1 NA 1.18866997199031 5 0.85921254646333 5 5 0 -5.7644109485063 LTS-005 chr11 74689190 75848321 1159132 * c(TPBGL, NEU3, SLCO2B1, SNORD15B, KLHL35, LOC283214, OR2AT4, ARRB1, MAP6, MIR326, SNORD15A, RPS3, UVRAG, MOGAT2, GDPD5, DGAT2, SERPINH1, SPCS2) 0.342958315484127 30 0.197129177555425 1.02373780934902 1108 0.467581863700368 4 2 2 -6.77239352804884 LTS-005 chr11 75848322 75848325 4 * UVRAG NA 0 NA 1.312 1 NA NA NA NA NA LTS-005 chr11 75848326 76795839 947514 * c(B3GNT6, TSKU, LRRC32, GUCY2EP, ACER3, THAP12, EMSY, CAPN5, UVRAG, WNT11) 0.33899107753653 35 0.0786304835364534 1.43820216599677 1004 0.459125921366855 6 4 2 -6.74337126359551 LTS-005 chr11 76795840 76813984 18145 * c(OMP, CAPN5) 0 1 NA 1.78638811601622 19 1.45102700068784 7 7 0 -5.76441168459952 LTS-005 chr11 76813985 77371114 557130 * c(CLNS1A, GDPD4, AQP11, MYO7A, OMP, PAK1, CAPN5) 0.256582160534391 12 0.15027903339717 1.46576506941597 658 0.544316335307968 5 4 1 -6.76009120582016 LTS-005 chr11 77371115 77412851 41737 * RSF1 0.42 1 NA 1.46710018060955 230 0.336476467125951 6 6 0 -5.76476104575921 LTS-005 chr11 77412852 78285875 873024 * c(KCTD21-AS1, NDUFC2-KCTD14, KCTD21, AAMDC, NDUFC2, RSF1, USP35, KCTD14, THRSP, ALG8, NARS2, INTS4, GAB2) 0.370309799622982 40 0.0517651934837518 1.38331900406516 860 0.348786600048656 5 3 2 -6.76781736297256 LTS-005 chr11 78285876 78365232 79357 * c(TENM4, NARS2) 0.323 1 NA 1.4431843748401 31 0.206190641507226 6 6 0 -5.7679538558458 LTS-005 chr11 78365233 78365400 168 * TENM4 NA 0 NA 1.4615608611334 4 0.209441121400105 6 NA NA -5.76441447992537 LTS-005 chr11 78365401 78781048 415648 * TENM4 0.191229719349647 9 0.192538957096999 1.6099277108353 321 0.920218042665709 6 5 1 -6.73567789728359 LTS-005 chr11 78781049 79133220 352172 * c(MIR708, MIR5579, TENM4) 0.48 1 NA 1.57530940801246 13 0.274850448845857 6 6 0 -5.76715474091815 LTS-005 chr11 79133221 82444201 3310981 * c(MIR4300, MIR5579, FAM181B, TENM4) NA 0 NA 1.42184619988737 30 0.313815444701712 6 NA NA -5.86486862386623 LTS-005 chr11 82444202 83544752 1100551 * c(SNORA70E, RAB30-AS1, DLG2, DDIAS, FAM181B, RAB30, ANKRD42, PCF11, PRCP, CCDC90B) 0.423240746883763 27 0.100504936024268 0.98183194700778 1114 0.285693431980143 4 2 2 -6.85685717201477 LTS-005 chr11 83544753 83544758 6 * DLG2 NA 0 NA 1.377 1 NA NA NA NA NA LTS-005 chr11 83544759 89603397 6058639 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, FOLH1B, CCDC83, CCDC89, RAB38, GRM5, TRIM77, NOX4, HIKESHI, SYTL2, TMEM126B, TRIM49, CREBZF, CCDC81, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.419022356339027 72 0.135775486688881 1.73945711257587 2270 0.477736752998127 7 4 3 -6.76924059603619 LTS-005 chr11 89603398 93754508 4151111 * c(NAALAD2, MIR1304, MIR4490, SLC36A4, FAT3, TRIM64, DEUP1, CHORDC1, C11orf54, HEPHL1, VSTM5, MTNR1B, SMCO4, SCARNA9, TRIM64B, TRIM49C, UBTFL1, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.445791116212858 41 0.0864633222676585 1.9219476572453 1716 0.503969260552028 8 4 4 -6.9858967174139 LTS-005 chr11 93754509 93754738 230 * HEPHL1 0 1 NA 2.53967126949377 5 5.24137229168087 10 10 0 -5.764410142224 LTS-005 chr11 93754739 93862376 107638 * c(PANX1, HEPHL1) 0.492 1 NA 1.87823642387941 139 0.420146354787404 8 8 0 -5.76552273340896 LTS-005 chr11 93862377 94197494 335118 * c(GPR83, PANX1, IZUMO1R, MRE11A) 0.0623288371385858 7 0.041596130772442 0.954000587110502 246 0.429418548017104 4 4 0 -6.78672279233803 LTS-005 chr11 94197495 94199725 2231 * MRE11A NA 0 NA 1.85 1 NA NA NA NA NA LTS-005 chr11 94199726 94201045 1320 * MRE11A 0.438 1 NA 1.76755879931507 5 0.358619993865373 7 7 0 -5.76441041232173 LTS-005 chr11 94201046 94225807 24762 * MRE11A 0.399 1 NA 1.64453561122023 59 0.389003945416972 7 7 0 -5.76483033310863 LTS-005 chr11 94225808 108093208 13867401 * c(WTAPP1, MIR1260B, MIR3920, CASP12, MIR4693, JRKL-AS1, LOC101054525, YAP1, CARD16, TMEM123, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, AMOTL1, ENDOD1, FUT4, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, ACAT1, KDM4E, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, NPAT, CWC15, PGR, CNTN5, SLC35F2, RAB39A, ANKRD49, ELMOD1, KDM4D, CEP126, CARD18, AASDHPPT, MMP27, C11orf97, LOC643733, NA NA NA NA NA NA NA NA NA LTS-005 LOC643923, SLN, TRPC6, DYNC2H1, CCDC82, PDGFD, CUL5, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, JRKL, MTMR2, ALKBH8, MMP20, CEP57) 0.443856011639159 193 0.0973919209104923 1.83089858886213 6429 0.498770250945209 7 4 3 -6.99439286998222 LTS-005 NA NA NA NA LTS-005 chr11 108093209 108106443 13235 * c(ATM, NPAT) 0.489 1 NA 1.99248033083353 17 0.311992375943802 8 8 0 -5.76441137282516 LTS-005 chr11 108106444 108343071 236628 * c(KDELC2, C11orf65, ATM) 0.309235324653457 9 0.2299255918287 1.88030619006374 417 0.445131369516933 7 5 2 -6.73685867277323 LTS-005 chr11 108343072 108343100 29 * KDELC2 0.492 1 NA 2.03791005837754 3 0.593002529505566 8 8 0 -5.76441016805061 LTS-005 chr11 108343101 113283546 4940446 * c(LOC100132078, NCAM1-AS1, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, KDELC2, LAYN, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANKK1, TIMM8B, HSPB2, C11orf53, PLET1, IL18, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, PTS, RDX, SDHD, C11orf1, ALG9, BCO2, DIXDC1, ZC3H12C, FDXACB1) 0.448081814247067 97 0.0865010254592296 1.81106459807318 3530 0.525710070698489 7 4 3 -7.03556845964562 LTS-005 chr11 113283547 113284066 520 * DRD2 0 1 NA 4.00561438600412 3 5.55242892795576 17 17 0 -5.76441013565805 LTS-005 chr11 113284067 113679119 395053 * c(MIR4301, DRD2, USP28, CLDN25, TMPRSS5, ZW10) 0.311046902785259 9 0.232467440969937 1.8553098773147 302 0.50266546156183 7 5 2 -6.7366305190575 LTS-005 chr11 113679120 113803104 123985 * c(USP28, HTR3B) 0.466 1 NA 1.70835556776942 125 0.294444767371163 7 7 0 -5.76505193615974 LTS-005 chr11 113803105 114401611 598507 * c(RBM7, NXPE1, REXO2, HTR3A, NNMT, C11orf71, ZBTB16, HTR3B) 0.466110949346873 14 0.027848096586957 1.8120545757089 488 0.406513957115563 8 4 4 -9.50848511234044 LTS-005 chr11 114401612 114421747 20136 * NXPE1 0.267 1 NA 1.73564854888473 5 0.349641530713958 7 7 0 -5.76442320583592 LTS-005 chr11 114421748 114421927 180 * NXPE1 0.192719495170745 12 0.122395378948222 1.88932293748042 18 0.870839428630512 17 14 3 -6.73330066901535 LTS-005 chr11 114421928 114421962 35 * NXPE1 0.346 1 NA 1.414 1 NA NA NA NA NA LTS-005 chr11 114421963 119371216 4949254 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, NXPE1, NXPE2, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, RNF214, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, NXPE4, VPS11, TMPRSS4, NA NA NA NA NA NA NA NA NA LTS-005 IFT46, DSCAML1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.443096071246408 172 0.112554547574901 1.80977257585431 6772 0.781221471990057 7 4 3 -6.88695734770787 LTS-005 NA NA NA NA LTS-005 chr11 119371217 119508750 137534 * USP2-AS1 NA 0 NA 2.079 1 NA NA NA NA NA LTS-005 chr11 119508751 119532444 23694 * NECTIN1 0.457980080329181 4 0.0154353490404331 2.13444886922844 36 0.707716629575551 15 8 7 -11.5017664688681 LTS-005 chr11 119532445 119533354 910 * NECTIN1 0.129 1 NA 1.90341573051481 19 0.476574797919168 8 8 0 -5.76441433724453 LTS-005 chr11 119533355 120328537 795183 * c(TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, NECTIN1, LOC649133) 0.333466990976613 12 0.212522708234089 1.98487263850128 660 0.855816293037864 9 6 3 -6.74101330769026 LTS-005 chr11 120328538 120328858 321 * ARHGEF12 0.496 1 NA 1.56644184328849 3 0.277013236747512 6 6 0 -5.76441178553111 LTS-005 chr11 120328859 124017563 3688705 * c(MIR4493, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, ARHGEF12, GRIK4, HSPA8, TMEM225, OR8D4, LOC341056, BSX, OR6X1, OR6M1, OR10G4, OR10G7, MIR100HG, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.436570005739027 99 0.108393330039786 1.85267290553343 2636 0.582321380239508 8 4 4 -6.87412476459082 LTS-005 chr11 124017564 124029427 11864 * VWA5A 0 1 NA 2.01252201081198 29 1.9298310366582 8 8 0 -5.76441050414697 LTS-005 chr11 124029428 124739797 710370 * c(PANX3, OR8B12, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, OR8B3, OR8A1, NRGN, SPA17, SIAE, ROBO3, MSANTD2, TBRG1, ESAM) 0.319907121205567 11 0.212131605805967 1.82360978974009 899 0.669622219876156 7 5 2 -6.73827661873831 LTS-005 chr11 124739798 124742307 2510 * ROBO3 0.474 1 NA 2.16284721886687 23 0.308184810576959 9 9 0 -5.76441870852148 LTS-005 chr11 124742308 126045822 1303515 * c(PATE3, CHEK1, PATE1, HYLS1, TMEM218, SLC37A2, HEPACAM, DDX25, STT3A, PATE2, PATE4, CDON, ROBO4, ACRV1, PKNOX2, HEPN1, ROBO3, CCDC15, PUS3, EI24, FEZ1) 0.428835213750335 49 0.131263065433269 1.86122897604888 1811 0.623644069981904 8 4 4 -6.79428338045457 LTS-005 chr11 126045823 126110658 64836 * c(FAM118B, RPUSD4) 0 1 NA 1.92088155495717 77 0.492943315299465 8 8 0 -5.76458131430652 LTS-005 chr11 126110659 126333105 222447 * c(TIRAP, DCPS, ST3GAL4-AS1, FOXRED1, ST3GAL4, SRPRA, FAM118B, KIRREL3) 0.348460744043085 15 0.216009876317419 1.9507464321941 493 0.667295656856237 8 5 3 -6.73689987234554 LTS-005 chr11 126333106 126391297 58192 * KIRREL3 0.449 1 NA 2.15678896812381 9 0.275273500359188 9 9 0 -5.76472310763257 LTS-005 chr11 126391298 128788680 2397383 * c(MIR3167, SENCR, KIRREL3-AS2, ETS1, C11orf45, FLI1, KIRREL3-AS3, KCNJ1, KCNJ5, KIRREL3) 0.431241990400386 39 0.081111841947915 1.83210004475657 653 0.636263438995784 8 4 4 -6.90935725419277 LTS-005 chr11 128788681 128790796 2116 * character(0) 0 1 NA 1.92153041159433 43 0.858996458570175 8 8 0 -5.76441193583863 LTS-005 chr11 128790797 129729255 938459 * c(TMEM45B, TP53AIP1, BARX2, ARHGAP32) 0.306998650491694 9 0.217284439796728 1.73486231754227 449 0.561490270356893 7 5 2 -6.73350421724172 LTS-005 chr11 129729256 129744304 15049 * c(TMEM45B, NFRKB) 0.411 1 NA 1.95055144042202 82 0.551987787287058 8 8 0 -5.76441907757158 LTS-005 chr11 129744305 134856661 5112357 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, LOC283177, ZBTB44, THYN1, APLP2, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, ST14, JAM3, GLB1L2) 0.431482932902725 102 0.102963613607154 1.86625810882601 2731 0.58532540826141 8 4 4 -6.86413994741693 LTS-005 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.794 1 NA NA NA NA NA LTS-005 chr12 90923 266266 175344 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.045 1 NA 1.43229040682009 63 0.555158154075815 6 6 0 -5.76580124636685 LTS-005 chr12 266267 7586350 7320084 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NA NA NA NA NA NA NA NA NA LTS-005 NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CACNA2D4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CD27, CLSTN3, NCAPD2) 0.0494596796542258 275 0.0240246224060197 1.51471841821196 9196 0.71116635203925 6 6 0 -6.73811236987233 LTS-005 NA NA NA NA LTS-005 chr12 7586351 7591470 5120 * CD163L1 NA 0 NA 1.225 1 NA NA NA NA NA LTS-005 chr12 7591471 9321501 1730031 * c(KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.0467227264829135 72 0.0226627611589802 1.32604562638444 2093 0.60086109071204 6 6 0 -6.81669600062135 LTS-005 chr12 9321502 9344962 23461 * PZP 0.051 1 NA 1.28796227535281 22 0.24725949003275 5 5 0 -5.76442322313256 LTS-005 chr12 9344963 9549801 204839 * c(LINC00987, A2MP1, PZP, LOC642846) 0.291146072489335 9 0.156538422688418 1.3588443020714 157 0.874861173047003 4 3 1 -6.74304414031527 LTS-005 chr12 9549802 9571420 21619 * DDX12P 0.04 1 NA 0.856984364450034 15 0.69581298801166 3 3 0 -5.76442126341435 LTS-005 chr12 9571421 9586697 15277 * DDX12P 0.0949450680199055 7 0.129857614332006 1.34084410422589 72 1.31693008827134 3 3 0 -6.73438095541671 LTS-005 chr12 9586698 9586720 23 * DDX12P NA 0 NA 2.753 1 NA NA NA NA NA LTS-005 chr12 9586721 9717935 131215 * DDX12P NA 0 NA 0.0606605660894311 98 0.0717633040437772 0 NA NA -10.7907361022996 LTS-005 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.958 1 NA NA NA NA NA LTS-005 chr12 9747241 10573093 825853 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.0591280089503493 46 0.0202824499944602 1.23922463292999 1111 0.411915864911531 5 5 0 -6.74162168105567 LTS-005 chr12 10573094 10573097 4 * KLRC3 NA 0 NA 1.706 1 NA NA NA NA NA LTS-005 chr12 10573098 10602613 29516 * c(KLRC1, KLRC2, KLRC3) 0.110834535097787 6 0.164878945492342 1.83601591064658 123 0.908084959690296 11 10 1 -6.73665416552169 LTS-005 chr12 10602614 10603088 475 * KLRC1 NA 0 NA 1.135 1 NA NA NA NA NA LTS-005 chr12 10603089 11174276 571188 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R19, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.0691469530638178 27 0.0153021794250589 1.22308019856024 603 0.355059590405093 4 4 0 -6.8210976187432 LTS-005 chr12 11174277 11174372 96 * c(PRH1-PRR4, TAS2R19, PRB4) 0.314 1 NA 2.24044409493947 7 0.723444242100641 9 9 0 -5.76441015030958 LTS-005 chr12 11174373 11214386 40014 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.20730969072841 13 0.10086942562363 1.35200541939887 70 0.905503430661617 6 5 1 -6.73523089652211 LTS-005 chr12 11214387 11214392 6 * c(PRH1-PRR4, TAS2R46, PRB4) 0.212 1 NA 1.41140122523678 3 0.574410132222613 6 6 0 -5.76441019073383 LTS-005 chr12 11214393 11215070 678 * c(PRH1-PRR4, TAS2R46, PRB4) 0.244056047281026 3 0.031 1.32047331461436 12 0.45188020502891 9 7 2 -6.73457155325288 LTS-005 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.36 1 NA NA NA NA NA LTS-005 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) 0.252332300170337 4 0.0295789902915341 0.358339533195582 79 0.140494679435528 9 7 2 -6.90612015967537 LTS-005 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.154 1 NA NA NA NA NA LTS-005 chr12 11285579 11286790 1212 * c(PRH1-PRR4, TAS2R30, PRB4) 0.296525884244689 2 0.161220346110533 1.12691372345171 26 0.311197688838561 7 5 2 -6.73542594722806 LTS-005 chr12 11286791 11287271 481 * c(PRH1-PRR4, TAS2R30, PRB4) 0.077 1 NA 1.30904143386095 12 0.602615410799735 5 5 0 -5.76441019459659 LTS-005 chr12 11287272 11461802 174531 * c(SMIM10L1, PRH1-PRR4, TAS2R42, PRB3, PRB4) 0.190452297078609 11 0.0934666688280811 1.298024923702 65 0.444839362752271 6 5 1 -6.75581425554604 LTS-005 chr12 11461803 11463244 1442 * PRB4 0.046 1 NA 1.70835111035519 7 1.07124653691722 7 7 0 -5.76441069836331 LTS-005 chr12 11463245 16410843 4947599 * c(LOC100506314, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, MANSC1, PRB1, PRB4, GPRC5D, ATF7IP, H2AFJ, FAM234B, PTPRO, PRB2, MIR613, MIR614, SLC15A5, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.0520291380597085 104 0.0311441860524449 1.3606883514533 3273 0.521168647986663 5 5 0 -6.80058879741664 LTS-005 chr12 16410844 16425498 14655 * SLC15A5 NA 0 NA 2.009 1 NA NA NA NA NA LTS-005 chr12 16425499 21329738 4904240 * c(LOC100506393, MIR3974, SLCO1B1, AEBP2, SLCO1B3, SLCO1B7, MGST1, PDE3A, PIK3C2G, SLCO1C1, PLEKHA5, LMO3, SKP1P2, SLC15A5, RERGL, PLCZ1, CAPZA3) 0.0395240193045588 31 0.0256835581898288 1.46455791762781 1293 0.526903587869141 6 6 0 -6.88004731234502 LTS-005 chr12 21329739 21331599 1861 * SLCO1B1 0.063 1 NA 1.25716479726332 9 0.487543075020044 5 5 0 -5.76441486517147 LTS-005 chr12 21331600 26869047 5537448 * c(MIR920, MIR4302, RASSF8-AS1, ABCC9, SLCO1B1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, GYS2, IAPP, ITPR2, KCNJ8, KRAS, LDHB, LRMP, GOLT1B, CASC1, ETNK1, CMAS, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, BHLHE41, PYROXD1, SPX, SSPN, C2CD5) 0.0745390829076697 64 0.0505788320739838 1.38695103596414 2978 0.421125999549976 5 5 0 -6.86124417047389 LTS-005 chr12 26869048 26943170 74123 * ITPR2 0.065 1 NA 1.16006219227512 31 0.398183277625574 4 4 0 -5.76629693305816 LTS-005 chr12 26943171 27848344 905174 * c(STK38L, FGFR1OP2, SMCO2, ITPR2, TM7SF3, ASUN, ARNTL2, C12orf71, PPFIBP1, MED21) 0.0808683250418307 9 0.146271532128132 1.45234148269924 920 3.52988122492789 4 4 0 -6.73883716244043 LTS-005 chr12 27848345 27849795 1451 * c(REP15, PPFIBP1) 0.043 1 NA 1.56828383858495 14 1.37403171300798 6 6 0 -5.76441046715677 LTS-005 chr12 27849796 31149212 3299417 * c(MANSC4, LINC00941, OVCH1-AS1, IPO8, OVCH1, REP15, TSPAN11, ERGIC2, CCDC91, FAR2, PTHLH, KLHL42, MRPS35, CAPRIN2, TMTC1) 0.0550026648870364 50 0.021239364685529 1.45867393543366 1591 0.535026084946664 6 6 0 -6.76317755703795 LTS-005 chr12 31149213 31270152 120940 * c(DDX11-AS1, DDX11, TSPAN11) 0.0470249534799019 20 0.0220451092559158 1.94901514181143 141 1.37911111612445 7 7 0 -6.73848381471588 LTS-005 chr12 31270153 31278269 8117 * character(0) NA 0 NA 1.229 1 NA NA NA NA NA LTS-005 chr12 31278270 32797237 1518968 * c(RNU6-78P, DENND5B-AS1, FGD4, DENND5B, AMN1, ETFBKMT, H3F3C, KIAA1551, FAM60A, BICD1, FLJ13224) 0.0528859105869388 38 0.0250695334584354 1.37675409677082 1072 0.444789829475587 6 6 0 -6.78357591787015 LTS-005 chr12 32797238 32797530 293 * FGD4 0.168 1 NA 1.22512489929181 9 0.369847415985445 5 5 0 -5.76441437796167 LTS-005 chr12 32797531 33049531 252001 * c(DNM1L, FGD4, YARS2, PKP2) 0.0547040323967189 4 0.0314470454362038 1.45307664745411 333 0.466721105971686 6 6 0 -6.74075238088239 LTS-005 chr12 33049532 33527156 477625 * PKP2 NA 0 NA 0.401 1 NA NA NA NA NA LTS-005 chr12 33527157 34175508 648352 * c(SYT10, ALG10) 0.173848576431824 6 0.0627803047672331 0.64146507943924 120 0.310484116428879 2 2 0 -7.0619865137636 LTS-005 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 0.672122572076811 55 0.127921916945521 2 NA NA -5.766822043339 LTS-005 chr12 38710341 38710523 183 * character(0) 0.138 1 NA 0.366177530778106 3 0.258124001208721 1 1 0 -5.76441295225951 LTS-005 chr12 38710524 42477889 3767366 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, KIF21A) 0.121625383219298 60 0.0765412539701437 0.625383265397217 2155 0.237721409351825 2 2 0 -6.75831684225753 LTS-005 chr12 42477890 42477962 73 * GXYLT1 NA 0 NA 1.004 1 NA NA NA NA NA LTS-005 chr12 42477963 42479217 1255 * GXYLT1 0.433 1 NA 0.948821444805376 57 0.342987505891971 4 4 0 -5.76450067282424 LTS-005 chr12 42479218 42479288 71 * GXYLT1 NA 0 NA 0.523 1 NA NA NA NA NA LTS-005 chr12 42479289 50848230 8368942 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, PRICKLE1, BCDIN3D, ANO6, ARID2, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, RND1, GPD1, LOC283332, GXYLT1, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, DBX2, NELL2, NA NA NA NA NA NA NA NA NA LTS-005 DHH, PLEKHA8P1, IRAK4, FKBP11, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, TWF1, NCKAP5L, RNY5, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23) 0.130459543137918 207 0.0725084211091928 0.596844882188558 9060 0.190809077036886 2 2 0 -6.80618527486914 LTS-005 NA NA NA NA LTS-005 chr12 50848231 50854883 6653 * LARP4 NA 0 NA 0.836 1 NA NA NA NA NA LTS-005 chr12 50854884 51386548 531665 * c(LARP4, METTL7A, TMPRSS12, ATF1, SLC11A2, DIP2B, HIGD1C) 0.109955431542562 9 0.0646795519808575 1.0097228910574 709 0.281909516597856 3 3 0 -6.90933189318974 LTS-005 chr12 51386549 51393007 6459 * SLC11A2 0.064 1 NA 1.10623214465655 25 0.326358443024435 4 4 0 -5.7644534721745 LTS-005 chr12 51393008 58190142 6797135 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, PTGES3, OS9, ATF7, BAZ2A, GALNT6, NXPH4, KRT71, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, KRT74, MYL6B, KRT72, CS, KRT80, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, EIF4B, CELA1, ERBB3, COPZ1, NA NA NA NA NA NA NA NA NA LTS-005 R3HDM2, NEMP1, ESYT1, TNS2, CBX5, SMUG1, STAC3, OR6C74, OR6C3, B4GALNT1, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, KRT6C, ORMDL2, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, ANKRD33, OR6C2, OR6C4, IGFBP6, INHBC, ITGA5, ITGA7, ITGB7, KRT77, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, FIGNL2, OR6C65, OR6C68, LRP1, MIR196A2, MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, SLC11A2, PA2G4, ATP5B, PCBP2, KRT76, CSAD, BIN2, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, POU6F1, PPP1R1A, PRIM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 NDUFA4L2, SMAGP, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, TFCP2, MAP3K12, NABP2, PIP4K2C, AAAS, CSRNP2, INHBE, PYM1, SARNP, SOAT2, ZC3H10, SPRYD3, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, ACVR1B, KRT75, MARCH9, COQ10A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ACVRL1, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.0702458705408273 341 0.0367736550777848 1.03222731176565 15559 0.420647731624703 4 4 0 -6.76420760546948 LTS-005 NA NA NA NA LTS-005 chr12 58190143 58216989 26847 * c(TSFM, CTDSP2, AVIL) 0.491 1 NA 0.964787542605148 211 0.274130901838541 4 4 0 -5.7666521564806 LTS-005 chr12 58216990 58220872 3883 * c(CTDSP2, MIR26A2) 0.313277002795385 16 0.137074614717678 1.03469180582423 61 0.415508609262894 7 5 2 -6.74027294438957 LTS-005 chr12 58220873 59197107 976235 * c(LOC100506844, CTDSP2, ATP23) 0.066 1 NA 0.911573318853976 67 0.243821457651325 3 3 0 -5.83015123841925 LTS-005 chr12 59197108 81331516 22134409 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, TMEM5, CCT2, FRS2, GLIPR1, CPSF6, KRR1, WIF1, IRAK3, XPOT, OSBPL8, C12orf56, RAB3IP, LRIG3, TPH2, CPM, GLIPR1L2, BEST3, E2F7, C12orf66, CSRP2, ZFC3H1, RPSAP52, PHLDA1, RAB21, MON2, TBC1D30, ZDHHC17, GRIP1, LEMD3, MSRB3, GLIPR1L1, KCNMB4, GNS, OTOGL, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, NA NA NA NA NA NA NA NA NA LTS-005 FAM19A2, IFNG, PTPRQ, KCNC2, LRRC10, FLJ41278, MIRLET7I, LYZ, MDM2, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, IL22, PAWR, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TBC1D15, SYT1, MIR548C, MIR617, MIR618, TSPAN8, MRS2P2, BBS10, YEATS4, HMGA2, THAP2, LLPH, DYRK2, CAPS2, LGR5, LIN7A, NAV3, SLC16A7, HELB, USP15) 0.0750140869156032 217 0.0414610317418392 1.01822036105907 11050 0.372040371108875 4 4 0 -6.95100882024269 LTS-005 NA NA NA NA LTS-005 chr12 81331517 88591562 7260046 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, CCDC59, MKRN9P, NTS, SLC6A15, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, C12orf29, RASSF9) 0.070948228273921 42 0.0376417876991073 1.11303177853492 1803 0.497741320457048 4 4 0 -6.76382108356464 LTS-005 chr12 88591563 88591653 91 * TMTC3 NA 0 NA 1.024 1 NA NA NA NA NA LTS-005 chr12 88591654 113449531 24857878 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, KRT19P2, TMTC3, NA NA NA NA NA NA NA NA NA LTS-005 ALDH1L2, SLC5A8, PPTC7, CCDC63, DAO, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, ALDH2, RPH3A, UHRF1BP1L, CUX2, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, HECTD4, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, C12orf76, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 MIR331, MVK, MYBPC1, MYL2, NFYB, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, ANAPC7, NT5DC3, VPS29, SLC25A3, PMCH, SSH1, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPN11, NTN4, TRPV4, RFX4, RPL6, ATXN2, SELPLG, LOC643339, LOC643711, LOC643770, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, GNPTAB, TCTN1, NAA25, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, HVCN1, USP30, FAM222A, FAM222A-AS1, MAPKAPK5, GALNT4, CRADD, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, NR1H4) 0.0733737505334109 432 0.0345501862380129 0.99653627349561 19378 0.413113714680216 4 4 0 -7.13245896316072 LTS-005 NA NA NA NA LTS-005 chr12 113449532 113495497 45966 * character(0) NA 0 NA 1.254 1 NA NA NA NA NA LTS-005 chr12 113495498 116398317 2902820 * c(SDS, SDSL, IQCD, DTX1, PLBD2, MED13L, TBX5-AS1, CFAP73, TPCN1, LHX5, TBX5, TBX3, DDX54, SLC8B1, RASAL1, RITA1, RBM19) 0.054249086873144 28 0.0342763435165965 1.09541061401132 1492 0.435544630025954 4 4 0 -6.91409505398564 LTS-005 chr12 116398318 123186006 6787689 * c(LINC00173, MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, TMEM233, MSI1, NOS1, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, TESC, ZCCHC8, PRKAB1, WSB2, NA NA NA NA NA NA NA NA NA LTS-005 DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, CLIP1, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, HNF1A, MIR620, B3GNT4, C12orf49, RNF34, COQ5, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.0661519972187034 191 0.04053401729758 1.00108287610489 7477 0.412060873093997 4 4 0 -6.85116831214718 LTS-005 NA NA NA NA LTS-005 chr12 123186007 123186365 359 * HCAR2 0.316 1 NA 1.20820610125009 9 1.0732520673169 5 5 0 -5.76441108703182 LTS-005 chr12 123186366 123212740 26375 * c(HCAR1, HCAR2, HCAR3) 0.170626960879724 11 0.102501086468743 0.907186704112571 120 0.635964581961766 7 6 1 -6.75156731383729 LTS-005 chr12 123212741 123254995 42255 * c(HCAR1, DENR) 0 1 NA 0.988920037214005 87 0.664082133216853 4 4 0 -5.7647561754164 LTS-005 chr12 123254996 124244815 989820 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, EIF2B1, ABCB9, ATP6V0A2, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HIP1R, C12orf65) 0.085722423940126 60 0.0597734895793877 0.990178234187079 2142 0.366372229649616 4 4 0 -6.78549369008086 LTS-005 chr12 124244816 133419709 9174894 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, ATP6V0A2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, NA NA NA NA NA NA NA NA NA LTS-005 UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.0720780735820596 176 0.0447354590755622 1.05758500583139 5531 0.482812129658145 4 4 0 -6.73590002963669 LTS-005 NA NA NA NA LTS-005 chr12 133419710 133420534 825 * CHFR NA 0 NA 0.41 1 NA NA NA NA NA LTS-005 chr12 133420535 133795960 375426 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.0817685872924339 41 0.0249731074870745 0.934997601169994 930 0.298931162459046 4 4 0 -6.84981589690587 LTS-005 chr12 133795961 133812708 16748 * ANHX NA 0 NA 0.927810836350469 71 0.224084817945801 3 NA NA -5.76640213468281 LTS-005 chr13 19271620 19271712 93 * character(0) 0.484 1 NA 1.685 1 NA NA NA NA NA LTS-005 chr13 19271713 25264666 5992954 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00417, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, ANKRD20A9P, C1QTNF9, LINC00442, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2 NA NA NA NA NA NA NA NA NA LTS-005 ) 0.423665551241954 82 0.106772311053515 1.00241580932338 2941 0.332494474465001 4 2 2 -6.92375006869595 LTS-005 NA NA NA NA LTS-005 chr13 25264667 25264679 13 * ATP12A 0 1 NA 7.456 1 NA NA NA NA NA LTS-005 chr13 25264680 25525562 260883 * c(ATP12A, CENPJ, RNF17, TPTE2P1) 0.365634047617499 10 0.194019930247728 1.00520525549259 413 0.440487827860584 4 2 2 -6.74524380685362 LTS-005 chr13 25525563 25599933 74371 * TPTE2P1 NA 0 NA 0.457 1 NA NA NA NA NA LTS-005 chr13 25599934 25671305 71372 * PABPC3 0.462890496875726 2 0.00848528137423858 0.620916751242697 73 0.381236991194583 2 1 1 -15.0311699016406 LTS-005 chr13 25671306 25671383 78 * PABPC3 NA 0 NA 0.914 1 NA NA NA NA NA LTS-005 chr13 25671384 26598317 926934 * c(AMER2, PABPC3, ATP8A2, MTMR6, NUP58) 0.332933332990101 9 0.230642460194225 1.03576838720274 979 0.868728476850022 4 3 1 -6.75896175571634 LTS-005 chr13 26598318 26598740 423 * character(0) 0.4 1 NA 0.753316999043879 9 0.317049855876187 3 3 0 -5.76443981600482 LTS-005 chr13 26598741 28367275 1768535 * c(CDK8, WASF3, USP12, MTIF3, GSX1, LNX2, SNORD102, GPR12, GTF3A, RASL11A, SHISA2, POLR1D, RNF6, RPL21, SNORA27) 0.422220742503716 14 0.127970055735063 1.01472389550521 832 0.256495710036787 4 2 2 -6.81463310357945 LTS-005 chr13 28367276 28368048 773 * GSX1 0 1 NA 1.28763775366683 9 1.49815953756601 5 5 0 -5.76441014718071 LTS-005 chr13 28368049 28589762 221714 * c(CDX2, GSX1, FLT3, PDX1, ATP5EP2, URAD) 0.282899391901611 12 0.240443702854586 1.09128482685101 240 0.605839380704731 4 3 1 -6.7332614807394 LTS-005 chr13 28589763 28623699 33937 * FLT3 0.473 1 NA 1.04020149260939 71 0.54494527220464 4 4 0 -5.7644602321297 LTS-005 chr13 28623700 33347497 4723798 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SLC46A3, HMGB1, LINC00544, POMP, UBL3, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1) 0.428779361449438 57 0.108089825612786 0.99325433950343 2807 0.302519395582404 4 2 2 -6.97217059215346 LTS-005 chr13 33347498 33349107 1610 * PDS5B NA 0 NA 1.218 1 NA NA NA NA NA LTS-005 chr13 33349108 40325713 6976606 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.421031883948386 82 0.133090019638255 1.06770581376496 2994 0.354338434293511 4 2 2 -6.76620698343189 LTS-005 chr13 40325714 40363720 38007 * COG6 0.48464836913706 2 0.0169705627484772 0.9885413754994 48 0.19595418370101 4 2 2 -12.6860279981851 LTS-005 chr13 40363721 40363724 4 * COG6 0.071 1 NA 0.47 1 NA NA NA NA NA LTS-005 chr13 40363725 41702807 1339083 * c(MIR320D1, TPTE2P5, LINC00332, SLC25A15, MRPS31, WBP4, ELF1, FOXO1, SUGT1P3, LINC00548, COG6, LINC00598, MIR621, KBTBD6) 0.360103115655024 9 0.195887722943527 0.95840885671353 385 0.177809083867321 4 2 2 -7.03397148474637 LTS-005 chr13 41702808 41834744 131937 * c(KBTBD7, KBTBD6, MTRF1) 0.497 1 NA 0.981899089823186 220 0.26055292039324 4 4 0 -5.77276627787665 LTS-005 chr13 41834745 47469940 5635196 * c(TPT1-AS1, OR7E37P, VWA8-AS1, CPB2-AS1, MIR5006, LINC00563, SMIM2-IT1, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ESD, ERICH6B, SPERT, VWA8, ZC3H13, LRCH1, SLC25A30, NUFIP1, SIAH3, RGCC, DNAJC15, GTF2F2, HTR2A, KCTD4, SERP2, LCP1, ENOX1, GPALPP1, TSC22D1-AS1, SNORA31, TPT1, NAA16, RUBCNL, COG3, TNFSF11, TSC22D1, EPSTI1, MTRF1) 0.443002900580712 81 0.0794443376067658 0.986894955554704 3107 0.335157826934324 4 2 2 -7.17706638243154 LTS-005 chr13 47469941 48528762 1058822 * c(HTR2A, SUCLA2) 0.37 1 NA 0.955922200241758 49 0.0991991271974441 4 4 0 -6.47591194046443 LTS-005 chr13 48528763 50035174 1506412 * c(LINC00462, LINC00441, MED4-AS1, LPAR6, RCBTB2, FNDC3A, MLNR, MED4, NUDT15, CYSLTR2, RB1, CDADC1, CAB39L, SETDB2, SUCLA2, ITM2B) 0.350015231174329 10 0.202240478418914 0.952815150943831 981 0.258656457123713 4 2 2 -6.92890351821729 LTS-005 chr13 50035175 50038209 3035 * SETDB2 0.446 1 NA 1.33334940600876 8 0.121747983262851 5 5 0 -5.76450028166878 LTS-005 chr13 50038210 52507110 2468901 * c(MIR3613, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, TRIM13, DLEU1, ARL11, WDFY2, ST13P4, DLEU7, FAM124A, CTAGE10P, INTS6, KCNRG, LINC00282, GUCY1B2, KPNA3, MIR16-1, PHF11, ATP7B, RCBTB1, SPRYD7, LINC00371, SERPINE3, RNASEH2B, DHRS12, CCDC70, SETDB2, EBPL, DLEU2) 0.453736678192225 29 0.0604131098551013 0.997381361880354 1465 1.36100874176278 4 2 2 -7.3455964502599 LTS-005 chr13 52507111 52507184 74 * ATP7B 0.463 1 NA 0.666 1 NA NA NA NA NA LTS-005 chr13 52507185 52544805 37621 * ATP7B 0.248145919913352 9 0.242271599197631 1.07891125211924 151 0.673331335472306 5 4 1 -6.73604185758642 LTS-005 chr13 52544806 52548140 3335 * ATP7B 0.498 1 NA 1.11035914221101 5 0.440602088056786 4 4 0 -5.76442520149994 LTS-005 chr13 52548141 53277972 729832 * c(MRPS31P5, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, NEK5, ALG11, NEK3, VPS36, ATP7B, THSD1, UTP14C) 0.457237739247936 15 0.0204375937452343 0.980807105217766 764 0.319023132773544 4 2 2 -10.2412847025005 LTS-005 chr13 53277973 53282634 4662 * LECT1 NA 0 NA 1.26 1 NA NA NA NA NA LTS-005 chr13 53282635 60240829 6958195 * c(MIR1297, MIR759, MIR5007, LINC00558, OLFM4, LECT1, PCDH17, PCDH8, PRR20B, PRR20D, PRR20E, DIAPH3) 0.384172668260344 9 0.164919677419039 1.07489567597798 397 0.359592175448547 4 2 2 -6.73477249666552 LTS-005 chr13 60240830 60411661 170832 * DIAPH3 0 1 NA 1.16598201082426 33 0.416314930325735 4 4 0 -5.76889521945103 LTS-005 chr13 60411662 67799329 7387668 * c(MIR3169, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, OR7E156P, PCDH9, PCDH20, TDRD3, DIAPH3) 0.221726825176948 9 0.221145879455169 1.05283706626773 381 0.384743438356262 4 3 1 -6.78929426919498 LTS-005 chr13 67799330 67800935 1606 * PCDH9 0.44 1 NA 1.14627641636347 31 0.24836072880571 4 4 0 -5.76448679395554 LTS-005 chr13 67800936 100741460 32940525 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR548AN, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, NA NA NA NA NA NA NA NA NA LTS-005 EDNRB, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, SLITRK5, FBXL3, HS6ST3, OXGR1, GPR18, UBAC2, LINC00550, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, MZT1, PCCA, PCDH9, POU4F1, NDFIP2, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, LMO7DN, ACOD1, UCHL3, ZIC2, RNF219, BORA, SLITRK6, STK24, ZIC5, SCEL, CLDN10, TM9SF2, TBC1D4) 0.440373298379027 107 0.110706246609055 1.02600229123557 6463 0.393067521051685 4 2 2 -7.06183760453766 LTS-005 NA NA NA NA LTS-005 chr13 100741461 100755086 13626 * PCCA NA 0 NA 0.651 1 NA NA NA NA NA LTS-005 chr13 100755087 100958101 203015 * PCCA 0.254 1 NA 0.632281013341464 68 0.132442028499573 2 2 0 -5.77278374262106 LTS-005 chr13 100958102 100959361 1260 * PCCA NA 0 NA 1.304 1 NA NA NA NA NA LTS-005 chr13 100959362 111373368 10414007 * c(BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, LINC00443, COL4A2-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, TNFSF13B, METTL21EP, COL4A1, COL4A2, LINC00343, EFNB2, METTL21C, ERCC5, FGF14, MYO16, NALCN, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, ING1, LIG4, PCCA, BIVM, ARGLU1, RAB20, NAXD, CCDC168, SLC10A2, TPP2, LINC00460, FAM155A, KDELC1, CARS2, TMTC4, ABHD13, IRS2, GGACT, TEX30, ITGBL1) 0.447382970721099 105 0.0705714079948362 1.04713603764543 3539 0.304057231557625 4 2 2 -7.13768828128256 LTS-005 chr13 111373369 111956391 583023 * c(LINC00346, ING1, ANKRD10, ARHGEF7) 0 1 NA 0.989849509120046 319 0.289417913973627 4 4 0 -5.78884506053613 LTS-005 chr13 111956392 113036692 1080301 * c(TEX29, SPACA7, SOX1, ARHGEF7) 0.337358442223637 9 0.205120154489455 1.10168727713905 199 0.642111789034254 4 3 1 -6.77250684021768 LTS-005 chr13 113036693 113053470 16778 * SPACA7 0.495 1 NA 0.949920422926496 14 0.462719653809926 4 4 0 -5.76506271862772 LTS-005 chr13 113053471 113818900 765430 * c(MCF2L-AS1, TUBGCP3, SPACA7, F7, F10, ATP11A, MCF2L, ATP11AUN, PROZ) 0.431853737794941 33 0.105778991655988 1.08126657068094 923 0.379586507613276 4 2 2 -6.82743099882455 LTS-005 chr13 113818901 113839747 20847 * c(PCID2, PROZ) 0.473 1 NA 1.02580115986389 75 0.28814598214625 4 4 0 -5.76466299884422 LTS-005 chr13 113839748 114112067 272320 * c(ADPRHL1, LAMP1, DCUN1D2, PCID2, GRTP1, CUL4A) 0.284438409381023 9 0.22508220720439 1.06903058774908 396 0.397091026121804 4 3 1 -6.73304463353673 LTS-005 chr13 114112068 114112287 220 * DCUN1D2 0.482 1 NA 1.06807315963576 3 0.295952698923325 4 4 0 -5.76441013517167 LTS-005 chr13 114112288 114204255 91968 * c(TMCO3, DCUN1D2) 0.462775170469787 18 0.0231192560433938 1.043469204302 142 0.284087083799493 4 2 2 -10.029410010645 LTS-005 chr13 114204256 114265444 61189 * c(TMCO3, TFDP1) 0 1 NA 1.20464369528235 11 1.06780104547957 5 5 0 -5.7645884429244 LTS-005 chr13 114265445 114839373 573929 * c(LINC00552, GAS6-AS2, LINC00565, RASA3, GAS6, TMEM255B, ATP4B, GRK1, GAS6-AS1, TFDP1) 0.391110801733768 8 0.165225171032918 1.05552669645649 474 0.377626989780726 4 2 2 -6.7334473922523 LTS-005 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.563 1 NA NA NA NA NA LTS-005 chr13 114897818 115092634 194817 * c(RASA3, CHAMP1, UPF3A, CDC16) 0 1 NA 0.834575867656532 225 0.227567639953417 3 3 0 -5.76449452535649 LTS-005 chr13 115092635 115092817 183 * CHAMP1 NA 0 NA 0.922195610999737 5 0.156634287434137 3 NA NA -5.76444922790264 LTS-005 chr14 19434116 20201875 767760 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.486 1 NA 0.992194718728173 9 0.656684242573586 4 4 0 -5.77029846536162 LTS-005 chr14 20201876 22471922 2270047 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, NA NA NA NA NA NA NA NA NA LTS-005 ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.427947242925058 162 0.1127176691866 1.02899608652244 3793 0.425076867117477 4 2 2 -6.81224603211266 LTS-005 NA NA NA NA LTS-005 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.291 1 NA NA NA NA NA LTS-005 chr14 22475772 22961968 486197 * character(0) 0.467301072739374 8 0.0237031492784036 1.28708274308756 485 0.317716933408055 6 3 3 -10.2542256604719 LTS-005 chr14 22961969 22962377 409 * character(0) NA 0 NA 0.546 1 NA NA NA NA NA LTS-005 chr14 22962378 24522821 1560444 * c(MIR208B, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, PRMT5, CEBPE, DHRS4, CMTM5, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, NGDN, LRP10, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, OXA1L, SLC22A17, HAUS4, C14orf119, RBM23, DHRS4-AS1, PSMB5, HOMEZ, BCL2L2, C14orf93, ABHD4, CDH24, IL25, DHRS4L1, THTPA, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E) 0.407606208384709 104 0.132518883840414 1.03132048994234 3685 0.369700520922666 4 2 2 -6.75268137484057 LTS-005 chr14 24522822 24522913 92 * CARMIL3 0.267 1 NA 1.19046333455869 3 0.090891877158156 5 5 0 -5.76445930949651 LTS-005 chr14 24522914 24542800 19887 * c(CARMIL3, CPNE6) 0.215477880694178 9 0.24039071205944 1.09550189482811 205 0.500305956940327 5 4 1 -6.73911472002592 LTS-005 chr14 24542801 24543873 1073 * CPNE6 0.474 1 NA 1.20409020523243 13 0.14083059472379 5 5 0 -5.76459195143168 LTS-005 chr14 24543874 34149866 9605993 * c(MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, MIR548AI, IRF9, TM9SF1, RIPK3, AP4S1, DTD2, DHRS1, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, LINC01551, ARHGAP5, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, RNF31, G2E3, PRKD1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, NPAS3, CBLN3, NA NA NA NA NA NA NA NA NA LTS-005 MIR624, TGM1, IPO4, NUBPL, DCAF11, ARHGAP5-AS1, CPNE6, AKAP6, REC8) 0.447285307526772 103 0.0701661784245643 1.0161999767955 5073 0.269056782721625 4 2 2 -7.30814507494266 LTS-005 NA NA NA NA LTS-005 chr14 34149867 36986357 2836491 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, KIAA0391) 0.420301064025231 36 0.112532249345941 0.974408421721471 1729 0.383863856526743 4 2 2 -6.87414097332102 LTS-005 chr14 36986358 36986433 76 * c(SFTA3, NKX2-1) NA 0 NA 1.327 1 NA NA NA NA NA LTS-005 chr14 36986434 37148962 162529 * c(SFTA3, NKX2-8, PAX9, NKX2-1, SLC25A21) 0.46921819431596 6 0.0313990445714516 1.11449383129379 194 0.281968185645001 4 2 2 -9.21285886412955 LTS-005 chr14 37148963 37149039 77 * SLC25A21 0.423 1 NA 1.69 1 NA NA NA NA NA LTS-005 chr14 37149040 38061260 912221 * c(SLC25A21-AS1, MIR4503, MIPOL1, FOXA1, SLC25A21) 0.258505748482855 9 0.224800158165227 1.0631579426272 350 0.397962250074866 4 3 1 -6.74179876429902 LTS-005 chr14 38061261 38091632 30372 * FOXA1 0.484 1 NA 0.99364206573463 35 0.701469876926511 4 4 0 -5.76460652455649 LTS-005 chr14 38091633 38725380 633748 * c(CLEC14A, SSTR1) 0.468045118505815 7 0.0162143381580859 1.0882893313628 291 0.303041299765673 4 2 2 -11.9419548617181 LTS-005 chr14 38725381 39901700 1176320 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, FBXO33, LINC00639, MIA2, PNN, GEMIN2) 0.416280615601317 24 0.13127623271317 0.935756459114303 746 0.323500552343202 4 2 2 -6.87431522970112 LTS-005 chr14 42355769 45644572 3288804 * c(SNORD127, C14orf28, LRFN5, FKBP3, FAM179B, KLHL28, PRPF39, FANCM, FSCB) 0.455535963106916 7 0.0288121997970106 1.11652620148846 677 0.296232108957701 4 2 2 -8.9226358224718 LTS-005 chr14 45644573 45644589 17 * FANCM 0.464 1 NA 1.516 1 NA NA NA NA NA LTS-005 chr14 45644590 45645877 1288 * FANCM 0.399 1 NA 1.378038917516 27 0.11216537444805 5 5 0 -5.76463153135523 LTS-005 chr14 45645878 45650813 4936 * FANCM 0.306 1 NA 1.70385350287549 11 0.371377729787097 7 7 0 -5.76442944298161 LTS-005 chr14 45650814 45673720 22907 * c(MIS18BP1, FANCM) 0.251259532939564 3 0.235185033537426 1.59341841932966 94 0.451980914258851 5 4 1 -6.73812987509198 LTS-005 chr14 45673721 45675190 1470 * MIS18BP1 NA 0 NA 1.238 1 NA NA NA NA NA LTS-005 chr14 45675191 50065444 4390254 * c(MIR548Y, LINC00871, LINC00648, LRR1, RPL10L, MDGA2, MIS18BP1, RPS29, NEMF) 0.271163988461094 8 0.222541809875936 1.12294462095543 317 0.38432947156643 4 3 1 -6.77893550582034 LTS-005 chr14 50065445 50068299 2855 * c(LRR1, NEMF) 0.386 1 NA 0.95717795990238 16 0.150035995681036 4 4 0 -5.76533397661241 LTS-005 chr14 50068300 52898667 2830368 * c(NA, FRMD6-AS2, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, FRMD6-AS1, ABHD12B, LINC01599, NID2, KLHDC2, ATP5S, LINC01588, LINC00640, ARF6, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, DNAAF2, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, SOS2, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.427188285533089 76 0.097531393056692 1.02770685907649 2972 0.284838531687639 4 2 2 -6.85241587666501 LTS-005 chr14 52898668 52907453 8786 * TXNDC16 0 1 NA 1.24846963817731 21 0.347051958508754 5 5 0 -5.76447561796348 LTS-005 chr14 52907454 53240335 332882 * c(GPR137C, ERO1A, PSMC6, TXNDC16, STYX) 0.304679354200078 12 0.227386118682951 1.02974856053886 502 0.343614338709677 4 3 1 -6.73960141115332 LTS-005 chr14 53240336 53324891 84556 * c(FERMT2, GNPNAT1, STYX) 0.498 1 NA 1.02580449504112 129 0.274674929435624 4 4 0 -5.76553852323472 LTS-005 chr14 53324892 67862178 14537287 * c(KTN1-AS1, OTX2-AS1, MIR4308, LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, CNIH1, GPHN, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, WDR89, L3HYPDH, SOCS4, NAA30, GPHB5, PPP1R36, SLC38A6, C14orf37, FAM71D, TMEM30B, EIF2S1, ESR2, ATG14, ZBTB1, DAAM1, SAMD4A, SYNE2, FNTB, FUT8, PLEKHG3, GCH1, PLEK2, TIMM9, KCNH5, GMFB, GPX2, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, TBPL2, NA NA NA NA NA NA NA NA NA LTS-005 TOMM20L, KTN1, LGALS3, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, DACT1, ATP6V1D, JKAMP, DHRS7, SIX4, TMEM260, PPM1A, FBXO34, C14orf105, PPP2R5E, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, RHOJ, TRMT5, ARID4A, RTN1, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, BMP4, SNAPC1, SPTB, CCDC175, ZBTB25, DDHD1, SGPP1, SYT16, CHURC1, MAPK1IP1L, AKAP5, KIAA0586, DLGAP5) 0.430801815635052 247 0.0968452448407953 1.0669336357898 9731 0.590249975991571 4 2 2 -6.83945874090806 LTS-005 NA NA NA NA LTS-005 chr14 67862179 67937765 75587 * c(TMEM229B, PLEK2) 0 1 NA 1.06116867154163 39 1.0963401205461 4 4 0 -5.76441202293038 LTS-005 chr14 67937766 68053574 115809 * c(TMEM229B, PLEKHH1) 0.254048689423395 10 0.22743487468333 1.13406434981359 224 0.507588177549151 5 4 1 -6.74137401194073 LTS-005 chr14 68053575 68053977 403 * PLEKHH1 0.468 1 NA 1.15354425569271 10 0.205683143586332 4 4 0 -5.76444340801702 LTS-005 chr14 68053978 71140662 3086685 * c(MED6, LOC100289511, SYNJ2BP-COX16, VTI1B, RDH12, ADAM21P1, ACTN1-AS1, ERH, ZFYVE26, TTC9, ADAM20P1, ARG2, PLEKHD1, RDH11, COX16, PIGH, EXD2, SYNJ2BP, SLC39A9, CCDC177, GALNT16, PLEKHH1, RAD51B, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, ACTN1, ADAM21, ADAM20, DCAF5, SUSD6) 0.417076285972496 75 0.121648373794502 1.07814916357381 2624 0.360243151121882 4 2 2 -6.76445063605988 LTS-005 chr14 71140663 71141891 1229 * TTC9 0 1 NA 1.16272299098993 25 0.553725738369938 4 4 0 -5.76442721967695 LTS-005 chr14 71141892 73436862 2294971 * c(LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, SNORD56B, MAP3K9, ZFYVE1, DPF3, RGS6) 0.341022978955206 27 0.189422566849647 1.06091488306558 1186 0.405136042412579 4 2 2 -6.772781341952 LTS-005 chr14 73436863 73440864 4002 * ZFYVE1 0.435 1 NA 1.10811595589626 25 0.221679949476717 4 4 0 -5.76447420640055 LTS-005 chr14 73440865 74196581 755717 * c(ACOT2, ACOT4, HEATR4, ZFYVE1, PSEN1, RBM25, ACOT1, ACOT6, DNAL1, NUMB, PAPLN, ELMSAN1, PNMA1) 0.449951180709728 38 0.0458727676384455 1.06590230930204 1220 0.265036805665606 4 2 2 -7.62326187853311 LTS-005 chr14 74196582 74400791 204210 * c(MIR4505, PTGR2, FAM161B, ZNF410, ELMSAN1) 0 1 NA 1.02496648573827 301 0.211634615967062 4 4 0 -5.76918269980936 LTS-005 chr14 74400792 74872784 471993 * c(FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.330289146000297 9 0.18579409152189 1.09398899054703 849 1.64233314664513 6 4 2 -6.7469505436664 LTS-005 chr14 74872785 74872926 142 * SYNDIG1L 0.427 1 NA 1.34581862581211 5 1.76342626724227 5 5 0 -5.76441017070027 LTS-005 chr14 74872927 77599384 2726458 * c(MIR4709, BATF, NPC2, TMED10, C14orf1, IFT43, JDP2, ISCA2, LRRC74A, DLST, ESRRB, VASH1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, LTBP2, FCF1, PGF, FLVCR2, GPATCH2L, YLPM1, IRF2BPL, SYNDIG1L, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, CIPC, EIF2B2, NEK9, ACYP1, AREL1) 0.411198403028715 83 0.130729269613151 1.07056367537861 3409 0.40001596521062 4 2 2 -6.74929900405883 LTS-005 chr14 77599385 77708804 109420 * c(ZDHHC22, TMEM63C) 0 1 NA 1.09919963293566 83 0.783026133067165 4 4 0 -5.76449490566581 LTS-005 chr14 77708805 77796003 87199 * c(MIR1260A, GSTZ1, POMT2, TMEM63C, NGB) 0.270684592735495 14 0.226063554712454 1.11543870199627 383 0.602572258430876 4 3 1 -6.73588937265299 LTS-005 chr14 77796004 77797471 1468 * GSTZ1 0.391 1 NA 1.06890152633893 15 0.292529575224373 4 4 0 -5.76441013500889 LTS-005 chr14 77797472 78366967 569496 * c(AHSA1, NOXRED1, ISM2, SAMD15, SNW1, TMED8, C14orf178, GSTZ1, ADCK1, VIPAS39, SLIRP, ALKBH1, SPTLC2) 0.416780610523385 27 0.125891283989859 1.06226860159671 1003 0.383562320266262 4 2 2 -6.76082588445271 LTS-005 chr14 78366968 78367045 78 * ADCK1 NA 0 NA 1.107 1 NA NA NA NA NA LTS-005 chr14 78367046 88654361 10287316 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GALC, LOC283585, LINC01146, GTF2A1, KCNK10, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.403079187368825 39 0.143520743374181 1.15133122472203 1751 0.357727213545127 4 2 2 -6.99452504688791 LTS-005 chr14 88654362 89088357 433996 * c(PTPN21, EML5, KCNK10, SPATA7, ZC3H14) 0.450736697488993 41 0.044487021949679 1.0479165675693 601 0.296249048469024 4 2 2 -7.69376777088141 LTS-005 chr14 89088358 89105159 16802 * EML5 0 1 NA 1.10282364312865 31 0.479245847969181 4 4 0 -5.76445348778152 LTS-005 chr14 89105160 90528715 1423556 * c(FOXN3, TTC8, EML5, FOXN3-AS2, FOXN3-AS1, TDP1, KCNK13, EFCAB11) 0.297075382114604 11 0.220804561876458 1.07557160416155 719 0.287275914810548 4 3 1 -6.73508693467716 LTS-005 chr14 90528716 90722824 194109 * KCNK13 0.392 1 NA 1.14873305101572 48 0.244983224204932 4 4 0 -5.77451288997637 LTS-005 chr14 90722825 91671124 948300 * c(SNORA11B, TTC7B, LINC00642, NRDE2, PSMC1, C14orf159, CALM1, RPS6KA5) 0.409059295854086 26 0.132293984978677 1.03756374594104 692 0.286334040275479 4 2 2 -6.75196169868763 LTS-005 chr14 91671125 91691657 20533 * C14orf159 NA 0 NA 1.05160631527417 35 0.204890325242924 4 NA NA -5.76448644834599 LTS-005 chr14 91691658 91698896 7239 * c(C14orf159, GPR68) NA 0 NA 0.789 1 NA NA NA NA NA LTS-005 chr14 91698897 91698954 58 * GPR68 0.192 1 NA 0.507 1 NA NA NA NA NA LTS-005 chr14 91698955 92913852 1214898 * c(FBLN5, TC2N, SLC24A4, ATXN3, CCDC88C, NDUFB1, CPSF2, PPP4R3A, CATSPERB, GPR68, TRIP11) 0.139928785712249 26 0.0324240414127922 0.63418851916514 1408 0.225325505385541 2 2 0 -6.85006660377922 LTS-005 chr14 92913853 92915415 1563 * SLC24A4 NA 0 NA 1.017 1 NA NA NA NA NA LTS-005 chr14 92915416 100204274 7288859 * c(LOC100129345, MIR3173, TUNAR, MIR5698, CYP46A1, PAPOLA, CHGA, SERPINA3, AK7, IFI27L1, SLC24A4, GSC, SERPINA12, PRIMA1, SYNE3, EML1, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, CCDC85C, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, DICER1-AS1, SERPINA5, SERPINA10, GLRX5, GSKIP, ASB2, SERPINA1, SERPINA4, ATG2B, UBR7, BTBD7, LGMN, C14orf132, DDX24, UNC79, NA NA NA NA NA NA NA NA NA LTS-005 PPP4R4, BDKRB1, BDKRB2, MOAP1, BCL11B, VRK1, OTUB2, LINC00341, CLMN, RIN3, TCL1A, IFI27L2, SETD3, HHIPL1, GON7, SERPINA6, CCNK, FAM181A, TCL1B, GOLGA5) 0.106274774473799 158 0.0663112786853312 0.695401450177723 5671 0.365054279075703 2 2 0 -7.29823837203078 LTS-005 NA NA NA NA LTS-005 chr14 100204275 100259700 55426 * EML1 NA 0 NA 0.446 1 NA NA NA NA NA LTS-005 chr14 100259701 100626182 366482 * c(DEGS2, EML1, EVL) 0.125043385436671 9 0.0327380173159246 0.628738421212671 371 0.167993115572847 2 2 0 -6.7413827643585 LTS-005 chr14 100626183 100706333 80151 * YY1 NA 0 NA 0.479030842442877 23 0.0953741954312077 1 NA NA -6.02557094061078 LTS-005 chr14 100706334 100728629 22296 * YY1 NA 0 NA 1.213 1 NA NA NA NA NA LTS-005 chr14 100728630 100747653 19024 * YY1 0.053 1 NA 0.975131566341046 95 0.239857004339659 4 4 0 -5.7660753143422 LTS-005 chr14 100747654 106370633 5622980 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR4710, MIR2392, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, ANKRD9, C14orf79, PLD4, ADSSL1, SLC25A29, CRIP1, CRIP2, LINC00239, LINC00637, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, NA NA NA NA NA NA NA NA NA LTS-005 HSP90AA1, JAG2, ASPG, KLC1, RTL1, TMEM179, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, CINP, CDCA4, PPP2R5C, MEG3, ZNF839, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, INF2, RD3L, TEX22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, WARS, XRCC3, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, ZFYVE21, MEG8, WDR25, TMEM121, AMN, APOPT1, DLK1, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, FAM30A, TECPR2) 0.0739867385390852 268 0.0468390872267538 1.05072191064494 7841 0.666874824729342 4 4 0 -6.73544790153301 LTS-005 NA NA NA NA LTS-005 chr14 106370634 106372997 2364 * FAM30A NA 0 NA 0.126 1 NA NA NA NA NA LTS-005 chr14 106372998 106388177 15180 * FAM30A 0.0751763964821878 4 0.014094916341244 0.428824676058438 39 0.675647128192933 4 4 0 -6.76311673247475 LTS-005 chr14 106388178 106388377 200 * FAM30A NA 0 NA 0.986 1 NA NA NA NA NA LTS-005 chr14 106388378 107113851 725474 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.0637893288517691 23 0.0601195449400149 1.04229401387773 303 1.22247950840541 4 4 0 -6.74744553911813 LTS-005 chr14 107113852 107113912 61 * character(0) NA 0 NA 1.013 1 NA NA NA NA NA LTS-005 chr14 107113913 107114193 281 * character(0) 0.062 1 NA 0.922494360058331 4 0.485329012114462 3 3 0 -5.76441644260839 LTS-005 chr14 107114194 107199130 84937 * character(0) 0.362344074042663 7 0.15173645699354 1.69305380688727 34 0.746833002663977 8 5 3 -6.73561574893327 LTS-005 chr14 107199131 107199250 120 * character(0) NA 0 NA 0.814 1 NA NA NA NA NA LTS-005 chr14 107199251 107259195 59945 * character(0) 0.105297471769456 2 0.00565685424949237 0.869689899367697 18 0.225823981428535 12 11 1 -7.66828725463672 LTS-005 chr14 107259196 107283157 23962 * character(0) NA 0 NA 0.781573725391716 25 0.174516952376171 3 NA NA -5.76683782227498 LTS-005 chr15 20169987 20434089 264103 * character(0) 0.055 1 NA 0.768932057341844 17 0.463457284344269 3 3 0 -5.77012239120661 LTS-005 chr15 20434090 22345038 1910949 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.266118486216077 26 0.157061247240099 0.887741961286113 174 0.768903131013308 4 3 1 -6.80822171793056 LTS-005 chr15 22345039 22345178 140 * LOC727924 0.431 1 NA 0.943929125101853 3 1.19004495713397 3 3 0 -5.76441094096829 LTS-005 chr15 22345179 22369267 24089 * c(OR4M2, LOC727924) 0.482687542206495 2 0.0176776695296637 0.711942703241539 22 0.323134409062771 2 1 1 -12.3693162575408 LTS-005 chr15 22369268 22369366 99 * c(OR4M2, LOC727924) NA 0 NA 0.684 1 NA NA NA NA NA LTS-005 chr15 22369367 22413825 44459 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.45224695616591 8 0.00924951736192607 1.54716187131093 38 0.807122433738585 6 3 3 -13.6873179011471 LTS-005 chr15 22413826 22413879 54 * OR4N3P NA 0 NA 0.643 1 NA NA NA NA NA LTS-005 chr15 22413880 22513271 99392 * OR4N3P 0.407537561731385 3 0.0629788324227541 0.59760225808363 48 0.254345955832262 2 1 1 -6.78140944583759 LTS-005 chr15 22513272 22833520 320249 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, REREP3) 0.188 1 NA 0.522271997332969 14 0.154396325327792 2 2 0 -5.95536057698334 LTS-005 chr15 22833521 28544722 5711202 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-005 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.124079113708036 58 0.0749024047406668 0.629953080284997 2561 0.256714172434569 2 2 0 -6.7835781599989 LTS-005 NA NA NA NA LTS-005 chr15 28544723 28566592 21870 * HERC2 NA 0 NA 0.187 1 NA NA NA NA NA LTS-005 chr15 28566593 29090718 524126 * c(LOC100289656, HERC2P9, WHAMMP2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.46 1 NA 0.400279827488694 76 0.214937048311458 1 1 0 -5.77978291310364 LTS-005 chr15 29090719 29093588 2870 * c(PDCD6IPP2, GOLGA6L7P) NA 0 NA 0.739 1 NA NA NA NA NA LTS-005 chr15 29093589 43851106 14757518 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CHRNA7, TGM7, PLA2G4E, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, FAN1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, FAM189A1, CCNDBP1, LPCAT4, PLA2G4F, NA NA NA NA NA NA NA NA NA LTS-005 LRRC57, NUTM1, GANC, TMEM87A, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283710, FAM98B, PLA2G4D, EHD4, APBA2, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, LTK, MIR211, MAP1A, MEIS2, TRPM1, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, SPTBN5, KLF13, PLCB2, DLL4, INO80, PPP1R14D, MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, NSMCE3, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 VPS18, RAD51, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, PDCD6IPP2, GOLGA8T, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, GOLGA8O, GOLGA6L7P, OIP5-AS1, TYRO3, CHAC1, KATNBL1, TMEM62, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.121359025866552 332 0.0717612825859121 0.598921587816677 14143 0.229897774079577 2 2 0 -6.79923298015998 LTS-005 NA NA NA NA LTS-005 chr15 43851107 43873639 22533 * PPIP5K1 NA 0 NA 0.211202655470319 39 0.30392612658071 0 NA NA -5.77978479956788 LTS-005 chr15 43873640 43888477 14838 * c(CKMT1B, PPIP5K1) NA 0 NA 0.927 1 NA NA NA NA NA LTS-005 chr15 43888478 45059814 1171337 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, CATSPER2, TRIM69, STRC, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.121161862806909 38 0.0645307164942867 0.578401717310095 1886 0.255140897697263 2 2 0 -6.76930765041236 LTS-005 chr15 45059815 45118056 58242 * TRIM69 0.264 1 NA 0.752449423138009 7 1.26510631964274 3 3 0 -5.76467289280267 LTS-005 chr15 45118057 45361255 243199 * c(TERB2, SORD) 0.285442539166627 7 0.0848791858495131 0.787002971787158 150 1.07943664518209 4 3 1 -6.74473180339598 LTS-005 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.242 1 NA NA NA NA NA LTS-005 chr15 45365581 45367016 1436 * SORD 0.22344378205969 4 0.158409806093773 0.282634168559608 47 0.532345206662396 5 4 1 -6.74434341931462 LTS-005 chr15 45367017 45384803 17787 * SORD NA 0 NA 0.745 1 NA NA NA NA NA LTS-005 chr15 45384804 45385626 823 * DUOX2 0.232 1 NA 0.563334270801726 17 0.125315220191981 2 2 0 -5.76461471808051 LTS-005 chr15 45385627 45386311 685 * DUOX2 0.129 1 NA 0.702298101394513 14 0.839324728576491 2 2 0 -5.76442151604288 LTS-005 chr15 45386312 48789465 3403154 * c(MIR147B, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.106549648524586 50 0.0653693587334654 0.621010430345883 2358 0.223681762412381 2 2 0 -6.80157083214612 LTS-005 chr15 48789466 60297330 11507865 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR2116, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, ADAM10, GNB5, ARPP19, SLC27A2, LEO1, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, FOXB1, PRTG, LINC00926, SCG3, GTF2A2, TMOD3, TMOD2, HDC, ONECUT1, GLDN, AQP9, USP50, TEX9, TNFAIP8L3, LIPC, NA NA NA NA NA NA NA NA NA LTS-005 SHC4, UNC13C, MYO1E, MYO5A, NEDD4, RSL24D1, FAM63B, RNF111, ZNF280D, TRPM7, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, RFX7, BNIP2, HSP90AB4P, MIR628, TCF12, SLTM, ATP8B4, POLR2M, SPPL2A, CGNL1, ALDH1A2, USP8, CCNB2, CCPG1, GCNT3, LDHAL6B, COPS2, PIGB, SECISBP2L) 0.132234487388055 247 0.0717651181604897 0.590146376071291 8857 0.211916906648547 2 2 0 -6.91124165232174 LTS-005 NA NA NA NA LTS-005 chr15 60297331 60743426 446096 * c(FOXB1, ANXA2, ICE2) 0.123293442380849 7 0.0280586121232985 0.654341314863762 247 0.283819414749826 2 2 0 -6.75824257734933 LTS-005 chr15 60743427 60771289 27863 * ICE2 0.083 1 NA 0.668265677276617 97 0.248437915315523 2 2 0 -5.76660814667974 LTS-005 chr15 60771290 60970973 199684 * c(RORA, ICE2) 0.0801414628980566 9 0.0421515124283815 0.715436191496391 304 0.396126405132437 3 3 0 -6.80460065081258 LTS-005 chr15 61521337 86311479 24790143 * c(NR2E3, DNM1P35, USP3-AS1, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, MIR4313, NA, UBE2Q2L, IQCH-AS1, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4511, MIR4515, SCAMP2, SNUPN, PDCD7, MIR5003, TSPAN3, FEM1B, DENND4A, SNAPC5, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, CLPX, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, LACTB, CHRNB4, DIS3L, CLK3, C15orf40, SENP8, MTFMT, SLC51B, HIGD2B, NA NA NA NA NA NA NA NA NA LTS-005 TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, C2CD4A, DRAIC, C15orf61, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, MGC15885, LCTL, ETFA, FAH, ITGA11, ZNF609, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, DAPK2, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 FBXL22, HEXA, TMEM202, LOC338963, IDH3A, GOLGA6A, TMC3, RBPMS2, ANKDD1A, IL16, IREB2, ISLR, GOLGA6L5P, C2CD4B, C15orf59, GOLGA2P7, UBE2Q2P1, KBTBD13, UBAP1L, SKOR1, ANKRD34C, ADAMTS7P1, ST20, LOXL1, MIR184, MIR190A, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, MYO9A, NEO1, NMB, OAZ2, SCAPER, HDGFRP3, RPS27L, RASL12, SPG21, HACD3, PDE8A, RAB8B, PKM, BTBD1, TM6SF1, PML, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CSNK1G1, ZFAND6, SCAND2P, PPIB, VPS13C, LRRC49, PAQR5, DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZSCAN2, ZWILCH, UACA, IMP3, LARP6, DNAJA4, GOLGA6B, MAP2K1, MAP2K5, PSMA4, C15orf39, THAP10, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, IGDCC4, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, BCL2A1, PPCDC, CELF6, RORA, RPL4, RPLP1, STRA6, LOC642423, GOLGA6L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, IQCH, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SNX1, SCARNA15, SCARNA14, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, TLE3, TPM1, LOC729739, ANKRD34C-AS1, TYRO3P, CA12, NOX5, EFL1, NEIL1, AAGAB, LMAN1L, PEAK1, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, PLEKHO2, WDR61, CD276, STARD5, AP3B2, ANP32A, VWA9, LINC00597, ADPGK, APH1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 FAM103A1, TLN2, FAM96A, MEX3B, MEGF11, SEMA7A, CILP, LINGO1, WDR73, UBL7, PIAS1, RAB11A, HERC1, PSTPIP1, LOC91450, SLC28A1, CALML4, SLC24A1, UBE2Q2, TRIP4, COX5A, STOML1, HOMER2, KIF23, IGDCC3, ZNF592, KIAA0101, ARNT2, USP3) 0.0841916203122224 463 0.0506849060561933 0.842071720498733 22305 0.441263687926279 3 3 0 -6.75014997090499 LTS-005 NA NA NA NA LTS-005 chr15 86311480 89007988 2696509 * c(MIR1276, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.0466577858480006 10 0.0569722154504574 0.948973973953333 683 0.472800924072279 4 4 0 -6.95967434421349 LTS-005 chr15 89007989 89007992 4 * MRPL46 NA 0 NA 0.716 1 NA NA NA NA NA LTS-005 chr15 89007993 102359203 13351211 * c(LINC00930, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR3529, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, ADAMTS17, ACAN, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, LINC00928, FAM169B, ANPEP, IDH2, ZNF774, IGF1R, ARPIN, NA NA NA NA NA NA NA NA NA LTS-005 ISG20, KIF7, ZNF710, HDDC3, SPATA41, GDPGP1, OR4F6, OR4F15, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, AEN, CRTC3, TTC23, MRPS11, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 LINC00923, SV2B) 0.0897079113134735 280 0.0487465408333306 0.857408476127174 8706 0.535039982009126 3 3 0 -6.74732757689002 LTS-005 NA NA NA NA LTS-005 chr15 102359204 102516544 157341 * c(FAM138E, OR4F4, WASH3P, OR4F15, OR4F13P) NA 0 NA 0.881771808934398 23 0.0787567927931756 3 NA NA -5.80057795774415 LTS-005 chr16 81704 96405 14702 * character(0) 0.374 1 NA 0.711135342117623 3 0.424783866611402 2 2 0 -5.76554346207113 LTS-005 chr16 96406 2653223 2556818 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-005 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.363796189816514 318 0.129848131407143 0.925027046437186 8298 0.353255678834706 3 2 1 -6.85106295596528 LTS-005 NA NA NA NA LTS-005 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.075 1 NA NA NA NA NA LTS-005 chr16 2672647 2728998 56352 * c(ERVK13-1, FLJ42627, LOC652276) 0.363 1 NA 0.208751942201223 58 0.257316410334093 0 0 0 -5.81397970985446 LTS-005 chr16 2728999 2729202 204 * character(0) NA 0 NA 1.564 1 NA NA NA NA NA LTS-005 chr16 2729203 2747930 18728 * KCTD5 0.384845187794486 3 0.0573614272253867 0.668019613696487 41 0.45154466056837 2 1 1 -6.73770284262846 LTS-005 chr16 2747931 3107366 359436 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, CLDN6, CLDN9, PKMYT1) 0.350549982057411 49 0.135914132306189 0.945395364074043 1112 0.405285535218972 3 2 1 -6.75148931863525 LTS-005 chr16 3107367 3843523 736157 * c(MTRNR2L4, ZNF263, TRAP1, CREBBP, ZNF597, DNASE1, NLRC3, CLUAP1, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NAA60, ZNF205-AS1, SLX4, ZSCAN10, TIGD7, IL32) 0.360486834967418 43 0.127568573182377 0.87019671197969 1770 0.352318150684465 3 2 1 -6.74027442172991 LTS-005 chr16 3843524 3930442 86919 * CREBBP NA 0 NA 0.539353816751523 43 0.252933399416567 2 NA NA -5.77696096796316 LTS-005 chr16 3930443 3930633 191 * character(0) NA 0 NA 0.889 1 NA NA NA NA NA LTS-005 chr16 3930634 28617497 24686864 * c(MIR365A, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, MIR548AA2, LCMT1-AS2, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, VASN, ADCY9, SLC5A11, RMI2, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, ANKS3, UBALD1, SEPT12, EARS2, CRYM, VWA3A, OTOA, TEKT5, GSG1L, C16orf89, C16orf71, ITPRIPL2, C16orf82, ABAT, NA NA NA NA NA NA NA NA NA LTS-005 EEF2KMT, NSMCE1, EMP2, PDILT, ERCC4, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, CLEC16A, MGRN1, NOMO1, CARHSP1, IL27, MPV17L, PDZD9, ANKS4B, TMEM186, ZNF500, RSL1D1, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, GTF3C1, UBN1, EEF2K, CDIP1, HMOX2, PKD1P1, C16orf96, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, BCAR4, KNOP1, CRYM-AS1, FLJ21408, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 NOMO3, CIITA, ABCC1, SMIM22, MYH11, NUBP1, NDUFAB1, IL21R, PARN, PAM16, TXNDC11, METTL9, NAGPA, BFAR, LCMT1, GDE1, GPRC5B, SYT17, PLK1, PMM2, RRN3, RBFOX1, NDE1, PPL, ACSM5, ARHGAP17, CPPED1, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, ALG1, UBFD1, PRM1, PRM2, C16orf62, TMEM159, LYRM1, NMRAL1, MIR193B, USP31, MKL2, PRM3, RBBP6, TNFRSF17, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, SRL, CHP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 SMG1P1, XYLT1, NPIPA3, ABCC6P1, LOC653786, SULT1A2, SULT1A1, MIR548D2, TFAP4, TNP2, CLEC19A, SHISA9, ABCC6P2, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, TVP23A, USP7, METTL22, CORO7, ROGDI, PALB2, KDM8, TMC5, TMC7, ATF7IP2, LOC81691, SNN, PLA2G10, NUDT16L1, DCTN5, GLYR1, GLIS2, SOCS1, C16orf45, DNAJA3, COG7, SNX29, NPIPA1, LITAF, KIAA0430, SEC14L5, CCP110, HS3ST4, HS3ST2) 0.348515303156295 449 0.152980028658613 0.900184184402792 15533 0.340158970448615 3 2 1 -7.29642846810463 LTS-005 NA NA NA NA LTS-005 chr16 28617498 28617552 55 * SULT1A1 0.245 1 NA 2.353 1 NA NA NA NA NA LTS-005 chr16 28617553 28621415 3863 * SULT1A1 0.311985522290582 10 0.0722787812723916 1.6081858498945 43 0.720139841993608 10 7 3 -6.7341731840219 LTS-005 chr16 28621416 28631284 9869 * SULT1A1 NA 0 NA 0.585 1 NA NA NA NA NA LTS-005 chr16 28631285 28734890 103606 * SULT1A1 0.276040429430985 2 0.128693434175952 0.598542163340395 45 0.308372901638011 4 3 1 -6.94831811583804 LTS-005 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.467 1 NA NA NA NA NA LTS-005 chr16 28834304 29367277 532974 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.372037760554954 24 0.0957168889281665 0.912425646199251 858 0.214381314676198 3 2 1 -6.80710547999832 LTS-005 chr16 29367278 29624792 257515 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3, SLC7A5P1) 0 1 NA 0.395921613940335 41 0.339562381567231 1 1 0 -5.76620810272141 LTS-005 chr16 29624793 32890852 3266060 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, NA NA NA NA NA NA NA NA NA LTS-005 MAZ, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ZNF646, SETD1A, RNF40, MVP) 0.367042723826339 110 0.137605519750802 0.881976993975312 5851 0.247304102798367 3 2 1 -6.81664069827285 LTS-005 NA NA NA NA LTS-005 chr16 32890853 32890951 99 * c(SLC6A10P, LOC390705) NA 0 NA 1.037 1 NA NA NA NA NA LTS-005 chr16 32890952 33962129 1071178 * c(SLC6A10P, LOC390705, LINC00273) 0.327494233968414 60 0.113881547142902 1.30977898984509 231 0.625484393145133 6 4 2 -6.7807530217622 LTS-005 chr16 33962130 33962150 21 * LINC00273 0.264 1 NA 0.798 1 NA NA NA NA NA LTS-005 chr16 33962151 33965646 3496 * LINC00273 0.266233510429921 21 0.12862681346771 0.785887083702099 35 0.583867586001478 8 6 2 -6.73878206936317 LTS-005 chr16 33965647 34682380 716734 * c(LINC01566, UBE2MP1) NA 0 NA 0.91046318224705 116 0.270617460994117 3 NA NA -5.80261234552392 LTS-005 chr16 46508169 46614938 106770 * c(ANKRD26P1, SHCBP1) 0 1 NA 0.963214668095591 103 0.259233069483285 4 4 0 -5.77468802096547 LTS-005 chr16 46614939 50328637 3713699 * c(LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, ZNF423, ORC6, CNEP1R1, C16orf87, PHKB, HEATR3, VPS35, PAPD5, SIAH1, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, CBLN1, MYLK3, ABCC12, N4BP1) 0.24039595281111 23 0.212172714715076 0.89425514167372 2073 0.284569364044138 3 2 1 -7.00143551220025 LTS-005 chr16 50328638 50338723 10086 * ADCY7 0.442 1 NA 0.909939402039725 21 0.205130109698118 3 3 0 -5.76533816333172 LTS-005 chr16 50338724 70161298 19822575 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00919, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, IRX5, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, ADCY7, CMTM1, NRN1L, CMTM3, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, CYLD, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, NA NA NA NA NA NA NA NA NA LTS-005 LRRC29, AMFR, VPS4A, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 FAM96B, TPPP3, CES1P1, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, PDF, DPEP2, DPEP3, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, B3GNT9, UTP4, NKD1, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.384972513835744 314 0.126885772557797 0.896326461435332 14291 0.260907853421143 3 2 1 -7.43834313781033 LTS-005 NA NA NA NA LTS-005 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.538 1 NA NA NA NA NA LTS-005 chr16 70162673 70219827 57155 * c(CLEC18C, PDPR) 0.387432559654189 2 0.00353553390593274 0.548153560642011 109 0.247122871033216 2 1 1 -6.96931487285072 LTS-005 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 1.135 1 NA NA NA NA NA LTS-005 chr16 70237374 75282025 5044652 * c(SNORD111B, VAC14-AS1, SNORA70D, SMG1P7, LOC100506083, LINC01568, CHST4, DDX19B, EXOSC6, IL34, CTRB1, AARS, ZFP1, AP1G1, DHODH, LDHD, FUK, MLKL, PHLPP2, SF3B3, COG4, GLG1, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, CTRB2, ZFHX3, CLEC18B, HYDIN, TXNL4B, RFWD3, DDX19A, ZNF821, VAC14, CMTR2, PSMD7, ST3GAL2, TAT, SNORD71, SNORD111, ZNF19, ZNF23, FA2H, CALB2, WDR59, PMFBP1, ZNRF1, MARVELD3, MTSS1L, NA NA NA NA NA NA NA NA NA LTS-005 BCAR1, DHX38, IST1) 0.384928505536884 213 0.116580460285744 0.907098897525709 5012 0.326826871744111 3 2 1 -6.94516233591511 LTS-005 NA NA NA NA LTS-005 chr16 75282026 75285220 3195 * BCAR1 NA 0 NA 0.713 1 NA NA NA NA NA LTS-005 chr16 75285221 88593296 13308076 * c(LOC100129617, SYCE1L, MIR1910, MIR3182, C16orf95, MIR4720, MIR4719, MIR5093, MIR5189, CDH13, CLEC3A, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, COX4I1, SLC38A8, FLJ30679, LOC146513, ZFPM1, ADAD2, ADAMTS18, LINC00311, MON1B, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, NUDT7, OSGIN1, HSBP1, HSD17B2, FAM92B, IRF8, KARS, LOC400548, FENDRR, NA NA NA NA NA NA NA NA NA LTS-005 C16orf74, MAF, CHST6, GINS2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, BANP, ZDHHC7, CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, MTHFSD, LINC00917, CA5A, TMEM231, KLHL36, FBXO31, CMIP, GAN, SLC7A5, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, ZNF469, CNTNAP4, MBTPS1, TAF1C, USP10, KCNG4, SDR42E1, BCAR1, KIAA0513, ATP2C2) 0.403980315099789 264 0.141047559260641 0.74558349824026 6361 0.450973151706395 3 2 1 -7.32277971498501 LTS-005 NA NA NA NA LTS-005 chr16 88593297 88594565 1269 * ZFPM1 0 1 NA 0.90391634491887 7 0.366167409020207 3 3 0 -5.76444095419103 LTS-005 chr16 88594566 88718896 124331 * c(ZC3H18, CYBA, ZFPM1, IL17C, MVD) 0.307468395647053 9 0.226549356898472 0.753250738047674 279 0.276842579177874 3 2 1 -6.76748508842694 LTS-005 chr16 88718897 88719877 981 * MVD 0.493 1 NA 0.865542213413648 9 0.381693594392151 3 3 0 -5.7644138443909 LTS-005 chr16 88719878 88788960 69083 * c(MIR4722, RNF166, SNAI3-AS1, SNAI3, CTU2, MVD, PIEZO1) 0.441867600846993 18 0.115228290031265 0.731122386286335 320 0.215212374514573 2 1 1 -6.88257901907813 LTS-005 chr16 88788961 88791875 2915 * PIEZO1 0 1 NA 0.794940137755546 29 0.439438978429937 3 3 0 -5.76443729598437 LTS-005 chr16 88791876 89291019 499144 * c(CDH15, SLC22A31, ZNF778, ACSF3, GALNS, LINC00304, APRT, PABPN1L, LOC400558, TRAPPC2L, CDT1, CBFA2T3, PIEZO1) 0.310280558065688 28 0.208105958461285 0.758934883599082 892 0.311430500637321 3 2 1 -6.78834154254418 LTS-005 chr16 89291020 89293281 2262 * ZNF778 0.469 1 NA 0.93112229481436 19 1.35217102451286 3 3 0 -5.76441806018171 LTS-005 chr16 89293282 90161170 867889 * c(VPS9D1-AS1, URAHP, LOC100287036, TUBB3, PRDM7, SPATA2L, SPATA33, AFG3L1P, DPEP1, ZNF778, FANCA, TCF25, GAS8, CPNE7, ANKRD11, MC1R, CHMP1A, DEF8, SNORD68, RPL13, SPG7, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.438887201532923 84 0.103197216625352 0.735674287442837 2055 0.261722667137179 2 1 1 -7.11916145457898 LTS-005 chr16 90161171 90161242 72 * character(0) NA 0 NA 0.994 2 0 0 NA NA -Inf LTS-005 chr17 6004 14008 8005 * DOC2B 0.112 1 NA 0.577468799862271 19 0.0670780726933721 2 2 0 -5.76774707150585 LTS-005 chr17 14009 8404338 8390330 * c(LOC100128288, C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, NA NA NA NA NA NA NA NA NA LTS-005 RTN4RL1, ODF4, KCTD11, CTNS, TRPV3, SLC16A11, FBXO39, DLG4, DPH1, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, TUSC5, GPS2, ABR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RPA1, RPL26, SRR, NXN, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, SCARF1, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.133207114275185 358 0.0736839601164057 0.608724575772015 15305 0.244414101807692 2 2 0 -6.73842036505714 LTS-005 NA NA NA NA LTS-005 chr17 8404339 8408053 3715 * MYH10 NA 0 NA 0.906 1 NA NA NA NA NA LTS-005 chr17 8408054 15469181 7061128 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, USP43, COX10, CDRT15, CFAP52, CCDC42, PIK3R6, MFSD6L, DNAH9, DHRS7C, TVP23C, PIK3R5, LINC00670, CDRT4, SPDYE4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PMP22, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, GAS7, MYH13, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.116729805487005 106 0.076593540460352 0.634043963158413 4227 0.262182196680606 2 2 0 -6.82900140104524 LTS-005 chr17 15469182 15476223 7042 * TRIM16 0.0848214274351241 3 0.0144683562761405 0.418013912113666 61 0.594303284977897 15 14 1 -6.79886504359932 LTS-005 chr17 15476224 16286078 809855 * c(MIR1288, TRIM16, ZSWIM7, ADORA2B, CENPV, TBC1D26, CDRT1, MEIS3P1, TTC19, ZNF286A, CDRT15P2, UBB, PIGL, NCOR1) 0.119762818519216 33 0.0831640401601412 0.589177897976844 1008 0.365092253439295 2 2 0 -6.74201937118974 LTS-005 chr17 16286079 16320844 34766 * TRPV2 NA 0 NA 0.682 1 NA NA NA NA NA LTS-005 chr17 16320845 18379187 2058343 * c(FAM106CP, PEMT, RAI1, LRRC75A-AS1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, KRT17P5, LRRC75A, LLGL1, KRT16P2, MYO15A, TRPV2, RASD1, ALKBH5, MED9, NT5M, ZNF287, ZNF624, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, GID4, DRC3, COPS3, ATPAF2, CCDC144A) 0.124167241096686 63 0.0575229645363723 0.623499457717505 3148 0.658060437477693 2 2 0 -6.73552603828183 LTS-005 chr17 18379188 18380081 894 * character(0) NA 0 NA 0.525 1 NA NA NA NA NA LTS-005 chr17 18380082 18579702 199621 * c(USP32P2, FOXO3B, TBC1D28, CCDC144B, LGALS9C, ZNF286B, FAM106A) 0.197982951967785 12 0.14942462881657 0.537482267900115 287 0.250854322095443 2 2 0 -6.89702619596015 LTS-005 chr17 18579703 18584000 4298 * ZNF286B NA 0 NA 0.317 1 NA NA NA NA NA LTS-005 chr17 18584001 18604816 20816 * c(TRIM16L, ZNF286B) 0.107051754610082 2 0.0509116882454314 0.147091647626072 39 0.129142960255431 2 2 0 -8.05008741354118 LTS-005 chr17 18604817 18610024 5208 * TRIM16L NA 0 NA 0.554 1 NA NA NA NA NA LTS-005 chr17 18610025 21117589 2507565 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.146192790537335 72 0.0869145561030936 0.603810870363719 2321 0.202047996001443 2 2 0 -6.76744138569705 LTS-005 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.314 1 NA 0.547752035829146 33 0.150272032368373 2 2 0 -5.78857017612757 LTS-005 chr17 21194770 21194779 10 * MAP2K3 NA 0 NA 0.436919793902445 2 0.236173664916307 1 NA NA -5.76441190346818 LTS-005 chr17 21194780 21194785 6 * MAP2K3 0.313 1 NA 1.015 1 NA NA NA NA NA LTS-005 chr17 21194786 21318663 123878 * c(KCNJ12, MAP2K3) 0.394762267166079 53 0.0884817226294646 0.772695558516886 155 0.381566203067043 2 1 1 -6.76315456110882 LTS-005 chr17 21318664 21318741 78 * KCNJ12 0.322 1 NA 1.8186523820233 2 0.195161471607487 7 7 0 -5.76441163876036 LTS-005 chr17 21318742 21318743 2 * KCNJ12 NA 0 NA 0.545 1 NA NA NA NA NA LTS-005 chr17 21318744 21318760 17 * KCNJ12 0.322 1 NA 1.851 1 NA NA NA NA NA LTS-005 chr17 21318761 21319475 715 * KCNJ12 0.261502503211294 17 0.112423045575498 1.3389255252844 39 0.859493001701008 12 9 3 -6.73367445486803 LTS-005 chr17 21319476 21319608 133 * KCNJ12 NA 0 NA 0.625 1 NA NA NA NA NA LTS-005 chr17 21319609 22066835 747227 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.267527153395955 35 0.110850281343574 0.651432150866709 246 0.537321571651654 4 3 1 -7.10712411359073 LTS-005 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.638 1 NA NA NA NA NA LTS-005 chr17 25620838 25972311 351474 * c(MIR4522, WSB1, LGALS9, TBC1D3P5, KSR1) 0.431 1 NA 0.621466609244838 325 0.149994061294278 2 2 0 -5.76727856341927 LTS-005 chr17 25972312 27975282 2002971 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, NA NA NA NA NA NA NA NA NA LTS-005 FOXN1, CORO6, SSH2, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.111543692903905 59 0.061455956583958 0.619454796654535 3887 0.204399299805034 2 2 0 -6.77567190319643 LTS-005 NA NA NA NA LTS-005 chr17 27975283 34433730 6458448 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-005 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.115150194628416 116 0.0773125255808795 0.584930806746193 6023 0.230680275883373 2 2 0 -6.87890641192816 LTS-005 NA NA NA NA LTS-005 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 1.714 1 NA NA NA NA NA LTS-005 chr17 34539282 34641702 102421 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) 0.426 1 NA 1.2638566882665 40 0.552934418492687 5 5 0 -5.76455057057881 LTS-005 chr17 34641703 34641717 15 * c(CCL4L1, NA) NA 0 NA 0.288 1 NA NA NA NA NA LTS-005 chr17 34641718 36234012 1592295 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.134436740872682 38 0.0474290066158179 0.583058314662906 1576 0.707036678101901 2 2 0 -6.75259421723017 LTS-005 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.788 1 NA NA NA NA NA LTS-005 chr17 36351756 37262080 910325 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, C17orf98, LASP1, MLLT6, LOC440434, GPR179, FBXO47, CWC25, PSMB3, PLXDC1, ARHGAP23, SNORA21, PCGF2, SRCIN1, PIP4K2B, MRPL45, RPL23) 0.120739715745467 37 0.0739852269971095 0.624639677366339 1578 0.188909928781888 2 2 0 -6.74486774815807 LTS-005 chr17 37262081 37262244 164 * c(LOC100131347, PLXDC1) 0 1 NA 0.770526485453746 4 0.509228828720449 3 3 0 -5.76441292172791 LTS-005 chr17 37262245 37576148 313904 * c(LOC100131347, STAC2, ARL5C, MED1, PLXDC1, RPL19, CACNB1, FBXL20) 0.0790763970447989 5 0.0805127319124125 0.627779549736045 547 0.318299037768051 3 3 0 -6.90321187949148 LTS-005 chr17 37576149 37579527 3379 * MED1 NA 0 NA 0.968 1 NA NA NA NA NA LTS-005 chr17 37579528 41424033 3844506 * c(KRTAP4-9, KRTAP4-7, RAMP2-AS1, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, STARD3, TMEM106A, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, KRT28, KRT24, ZNF385C, ERBB2, EZH1, CASC3, IKZF3, KCNH4, GAST, G6PC, KRT23, NA NA NA NA NA NA NA NA NA LTS-005 KAT2A, TUBG2, CCR10, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, MSL1, KRT27, IFI35, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, KRT33B, KRT34, KRT35, KRT39, NBR1, NAGLU, ACLY, NEUROD2, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, KLHL11, GSDMB, PSMD3, RAB5C, RARA, FKBP10, RPL27, WNK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, DHX58, PLEKHH3, COASY, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PPP1R1B, MIEN1, VPS25, GHDC, KRTAP4-4, TNS4, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, PGAP3, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.0726860989974767 231 0.0366585636889561 1.02524907181242 9071 0.375997218735458 4 4 0 -6.76107491490034 LTS-005 NA NA NA NA LTS-005 chr17 41424034 41424052 19 * character(0) 0.133 1 NA 0.113 1 NA NA NA NA NA LTS-005 chr17 41424053 41522213 98161 * c(LINC00910, MIR2117, ARL4D) 0.306706859380001 9 0.160775550932901 0.898660946282522 59 0.390056162690196 4 3 1 -6.75499788079656 LTS-005 chr17 41522214 41598138 75925 * c(MIR2117, DHX8) 0 1 NA 0.968973082324509 103 0.350335255658519 4 4 0 -5.76797000299203 LTS-005 chr17 41598139 44159874 2561736 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2 NA NA NA NA NA NA NA NA NA LTS-005 ) 0.0638871837539363 77 0.034780151236407 1.04743915753504 3925 0.383289289917694 4 4 0 -6.7786989933022 LTS-005 NA NA NA NA LTS-005 chr17 44159875 44336603 176729 * character(0) NA 0 NA 0.690997490728304 47 0.27358500988143 2 NA NA -5.78595819307169 LTS-005 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.37 1 NA NA NA NA NA LTS-005 chr17 44336710 44782233 445524 * character(0) 0.0677547607433214 2 0.00565685424949237 0.439637460860668 73 0.193182849637891 4 4 0 -10.3964750389954 LTS-005 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.198 1 NA NA NA NA NA LTS-005 chr17 44788332 45214420 426089 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.0558168878819983 6 0.0350185665040704 1.00651894396018 288 0.246265435100546 4 4 0 -6.89019751471454 LTS-005 chr17 45214421 45214473 53 * CDC27 0.421 1 NA 0.693 1 NA NA NA NA NA LTS-005 chr17 45214474 45249372 34899 * CDC27 0.319243336511592 20 0.127101813726758 0.752528696912026 80 0.268807303575807 3 2 1 -6.7758559724129 LTS-005 chr17 45249373 45258954 9582 * CDC27 0 1 NA 0.898166574083817 7 0.0745848829314946 3 3 0 -5.76908936177177 LTS-005 chr17 45258955 48154718 2895764 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-005 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0632031070303495 88 0.0413232282790478 0.995661870221739 3961 0.464467271105667 4 4 0 -6.80706889194058 LTS-005 NA NA NA NA LTS-005 chr17 48154719 56676812 8522094 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, NA NA NA NA NA NA NA NA NA LTS-005 CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.0724541964934285 146 0.0340862232991599 1.04972963145276 5443 0.365526366797166 4 4 0 -6.74547338963641 LTS-005 NA NA NA NA LTS-005 chr17 56676813 67411154 10734342 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, NA NA NA NA NA NA NA NA NA LTS-005 APOH, LRRC37A3, KPNA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, FAM20A, BCAS3, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.0732361673022684 147 0.039357163279 0.99279644060514 7972 0.320779708899754 4 4 0 -7.05488606389711 LTS-005 NA NA NA NA LTS-005 chr17 67411155 70732957 3321803 * c(LINC00673, SLC39A11, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, MAP2K6, SOX9) 0.0849595654019556 7 0.0251821932552122 1.1780020428235 242 0.372141380998853 4 4 0 -6.99754657582879 LTS-005 chr17 70732958 70845776 112819 * SLC39A11 NA 0 NA 0.909 1 NA NA NA NA NA LTS-005 chr17 70845777 80363278 9517502 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-005 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.0837110860783989 454 0.0492372915483283 0.943201296210897 14298 0.39076498830288 3 3 0 -7.21957552467072 LTS-005 NA NA NA NA LTS-005 chr17 80363279 80363377 99 * OGFOD3 NA 0 NA 1.005 1 NA NA NA NA NA LTS-005 chr17 80363378 80386556 23179 * c(HEXDC, OGFOD3) 0.114 1 NA 1.85024081397682 38 0.758623176389526 7 7 0 -5.76447656906349 LTS-005 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.829 1 NA NA NA NA NA LTS-005 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0861864280925825 33 0.0258940513234101 0.938539631324661 895 0.325446365658384 3 3 0 -6.81565027391375 LTS-005 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.06002361390175 13 0.156499406077353 4 NA NA -5.76446330029275 LTS-005 chr18 116845 254180 137336 * c(ROCK1P1, USP14, THOC1) 0 1 NA 1.02325998873662 179 0.23303660847081 4 4 0 -5.76727356401542 LTS-005 chr18 254181 3457844 3203664 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, LPIN2, THOC1) 0.405626701382484 52 0.147194645196966 0.957213053132731 1540 0.331807805936666 4 2 2 -6.94485506417235 LTS-005 chr18 3457845 3874336 416492 * c(DLGAP1-AS1, TGIF1, DLGAP1) 0.471299263607326 5 0.0247446964014513 1.02718940702449 229 0.25074749347766 4 2 2 -10.2069554419751 LTS-005 chr18 3874337 5232843 1358507 * c(DLGAP1-AS4, DLGAP1-AS3, DLGAP1-AS5, AKAIN1, DLGAP1) 0.41 1 NA 1.04650015621813 55 0.255695074343975 4 4 0 -5.76989982836729 LTS-005 chr18 5232844 6030663 797820 * c(MIR3976, LINC00526, EPB41L3, LINC00667, MIR3976HG, TMEM200C, ZBTB14, L3MBTL4) 0.315465709909357 9 0.247473230875584 1.09537338374953 351 0.29948616731309 4 3 1 -6.74502206536764 LTS-005 chr18 6030664 6576156 545493 * c(LINC01387, MIR4317, L3MBTL4) 0.484 1 NA 1.06993882690757 127 0.248814820495359 4 4 0 -5.76441720409144 LTS-005 chr18 6576157 10759845 4183689 * c(LINC01387, LOC100192426, RALBP1, RAB31, APCDD1, RAB12, ANKRD12, MTCL1, LAMA1, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, PIEZO2, ARHGAP28, TXNDC2, NAPG, VAPA, PPP4R1) 0.450518376396883 68 0.0709795504067461 1.04240184203415 2164 0.310264239524401 4 2 2 -7.16066688354742 LTS-005 chr18 10759846 10762413 2568 * PIEZO2 0 1 NA 1.5444776464247 9 2.19052231848429 6 6 0 -5.76441017758799 LTS-005 chr18 10762414 11884145 1121732 * c(GNAL, CHMP1B, PIEZO2, MPPE1) 0.332695620378324 21 0.171750566644938 1.05690290967562 335 0.483111152882916 4 3 1 -6.77824543595583 LTS-005 chr18 11884146 11885084 939 * c(GNAL, MPPE1) 0.474 1 NA 0.99902008565138 21 0.185243057835349 4 4 0 -5.76448469588522 LTS-005 chr18 11885085 12366937 481853 * c(AFG3L2, CIDEA, GNAL, ANKRD62, IMPA2, C18orf61, MPPE1, TUBB6) 0.460955530878807 29 0.0292788109128924 1.04450662690552 418 0.298390793995903 4 2 2 -9.08068297956289 LTS-005 chr18 12366938 12377177 10240 * AFG3L2 0.286 1 NA 1.10527918811971 22 0.293265478180847 4 4 0 -5.76449103028422 LTS-005 chr18 12377178 14866465 2489288 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, CEP192, SPIRE1, PSMG2, PTPN2, LDLRAD4, CEP76, SEH1L, RNMT) 0.394801216727204 38 0.137074804883001 0.999513050089135 1249 0.297659642687192 4 2 2 -6.80845682711943 LTS-005 chr18 14866466 15006193 139728 * character(0) NA 0 NA 1.17290963681739 35 0.578545750026694 4 NA NA -5.76657764595945 LTS-005 chr18 18529727 18530950 1224 * ROCK1 0.488 1 NA 0.817539808826978 25 0.168452386942621 3 3 0 -5.7644286232245 LTS-005 chr18 18530951 21137197 2606247 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, C18orf8, MIR1-2, MIR133A1, NPC1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.403105132104353 38 0.145221949620206 0.991897833173453 1500 0.272344730690516 4 2 2 -6.853199436082 LTS-005 chr18 21137198 22032452 895255 * c(MIR320C2, OSBPL1A, TTC39C, ANKRD29, CABYR, LAMA3, NPC1, IMPACT) 0.335538917790133 10 0.131444284774957 1.39091983471144 964 0.328484113825369 6 4 2 -6.77725873309384 LTS-005 chr18 22032453 22059863 27411 * c(IMPACT, HRH4) NA 0 NA 1.43176779092948 93 0.28352344926533 6 NA NA -5.76525352489637 LTS-005 chr18 22642584 22669614 27031 * ZNF521 0.075 1 NA 0.958001153928635 9 0.330901210501127 4 4 0 -5.76618073718008 LTS-005 chr18 22669615 43422097 20752483 * c(CDH2, ZSCAN30, MIR302F, MIR4319, MIR4318, MIR3975, DSG2-AS1, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, INO80C, PSMA8, SLC25A52, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, KCTD1, LINC00907, SIGLEC15, AQP4, CCDC178, MIR187, MEP1B, WBP11P1, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, RIT2, KC6, GAREM1, MIR924HG, NA NA NA NA NA NA NA NA NA LTS-005 SLC14A1, SS18, SYT4, TAF4B, TTR, PCAT18, ZNF24, FHOD3, ASXL3, SLC14A2, CHST9, C18orf21, ZNF397, NOL4, B4GALT6) 0.0732637302999891 110 0.0408625679305837 1.04475486217704 5588 0.584195559712674 4 4 0 -6.75172477376672 LTS-005 NA NA NA NA LTS-005 chr18 43422098 43422196 99 * SIGLEC15 NA 0 NA 1.046 1 NA NA NA NA NA LTS-005 chr18 43422197 43914347 492151 * c(HAUS1, C18orf25, SIGLEC15, RNF165, ATP5A1, EPG5, PSTPIP2) 0.0861793720061908 20 0.0239874418898942 0.932262306988105 641 0.317364200992437 3 3 0 -6.80774746817484 LTS-005 chr18 43914348 44013086 98739 * RNF165 NA 0 NA 1.439 1 NA NA NA NA NA LTS-005 chr18 44013087 44181345 168259 * c(LOXHD1, RNF165) 0.0292269072487553 4 0.0323573793747269 1.47220903978363 268 0.712000985437925 10 10 0 -6.79067924956518 LTS-005 chr18 44181346 48346024 4164679 * c(SNORD58C, MIR1539, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, LOXHD1, TCEB3C, ZBTB7C, SKA1, CFAP53, SNORD58B, SNORD58A, ST8SIA5, CXXC1, SMAD2, SMAD7, MBD1, MYO5B, C18orf32, IER3IP1, TCEB3B, DYM, MAPK4, RPL17, SKOR2, SCARNA17, KATNAL2, MRO, HDHD2, PIAS2, LIPG, CTIF) 0.0696586865449293 56 0.0377825244768551 1.0383707947113 2055 0.401424049974758 4 4 0 -6.75071590345791 LTS-005 chr18 48346025 48474658 128634 * c(ME2, MRO) NA 0 NA 0.954633915706152 102 0.249853118762113 4 NA NA -5.78011999615129 LTS-005 chr18 48474659 48991891 517233 * c(LINC01630, SMAD4, ME2, MEX3C, ELAC1) 0.149 1 NA 0.574820802303749 339 0.160798169995972 2 2 0 -5.80806156594986 LTS-005 chr18 48991892 61627721 12635830 * c(LINC01630, LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, DCC, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, DYNAP, BOD1L2, HMSD, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, SERPINB2, ST8SIA3, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, SNORA37, TCF4, NA NA NA NA NA NA NA NA NA LTS-005 CCDC68, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, TXNL1, ONECUT2, VPS4B) 0.126377310150611 152 0.0667747859397185 0.604938786293077 5278 0.323291244949207 2 2 0 -6.73953590279333 LTS-005 NA NA NA NA LTS-005 chr18 61627722 61645487 17766 * SERPINB8 NA 0 NA 0.707 1 NA NA NA NA NA LTS-005 chr18 61645488 66344471 4698984 * c(CDH7, MIR5011, LINC00305, LOC284294, CDH19, LINC01538, SERPINB8, TMX3, LOC643542, DSEL) 0.0921683135119783 7 0.0571422619016617 0.696757151266165 608 0.431240912000218 2 2 0 -7.19845136273343 LTS-005 chr18 66344472 66346661 2190 * TMX3 NA 0 NA 0.602 1 NA NA NA NA NA LTS-005 chr18 66346662 77916691 11570030 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.131877699943675 93 0.0650845998880687 0.62355206741536 3291 0.269046890529255 2 2 0 -6.7780585711881 LTS-005 chr18 77916692 78005362 88671 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.561989790659207 65 0.105633771825113 2 NA NA -5.79715637928409 LTS-005 chr19 107416 313633 206218 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.129 1 NA 0.645466454218617 73 0.208593711260607 2 2 0 -5.77312145833079 LTS-005 chr19 313634 5225802 4912169 * c(C19orf71, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, TICAM1, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, CFD, ANKRD24, ARID3A, NA NA NA NA NA NA NA NA NA LTS-005 EEF2, EFNA2, ELANE, SBNO2, KDM4B, ZFR2, PIP5K1C, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, ODF3L2, MKNK2, GPX4, UHRF1, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MIR7-3, MATK, PLIN5, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PRTN3, AZU1, NCLN, SPPL2B, SHD, PTBP1, WDR18, REXO1, PTPRS, ZNF77, CACTIN, CELF5, HCN2, RPS15, SGTA, LINGO3, ARRDC5, SH3GL1, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, PLPPR3, ZNF556, UBXN6, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RAX2, MUM1, MPND, ATCAY, S1PR4, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, REEP6, APBA3, CDC34) 0.130941802888724 345 0.0703909339767127 0.606520331643522 9283 0.219406032541277 2 2 0 -6.73796372997853 LTS-005 NA NA NA NA LTS-005 chr19 5225803 5231599 5797 * PTPRS NA 0 NA 0.635039139710077 17 0.0841130629149907 2 NA NA -5.76516157975084 LTS-005 chr19 5231600 5238926 7327 * PTPRS NA 0 NA 1.041 1 NA NA NA NA NA LTS-005 chr19 5238927 5245971 7045 * PTPRS 0.478 1 NA 1.02143608717757 29 0.305313700421427 4 4 0 -5.76450290960251 LTS-005 chr19 5245972 8122737 2876766 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, TGFBR3L, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, ZNRF4, PRR22, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, SLC25A41, MBD3L5, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, VMAC, CTXN1, MLLT1, CLEC4GP1, NRTN, FLJ25758, MAP2K7, PSPN, NA NA NA NA NA NA NA NA NA LTS-005 RETN, GPR108, DUS3L, XAB2, MCOLN1, CAMSAP3, PTPRS, RFX2, SAFB, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, DENND1C, LRRC8E, PRR36, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, TNFSF14, TNFSF9, CRB3, PEX11G, TRIP10, LONP1, SAFB2, CD70) 0.402246960386971 173 0.148732006551445 1.04874642526794 4415 0.436518984785343 4 2 2 -6.74053863257644 LTS-005 NA NA NA NA LTS-005 chr19 8122738 8127496 4759 * CCL25 0 1 NA 1.18676783689308 15 1.43421381483608 5 5 0 -5.76442121892733 LTS-005 chr19 8127497 8140371 12875 * c(CCL25, FBN3) 0.419742623702377 2 0.0650538238691623 1.03045468029034 33 0.281660885049143 4 2 2 -6.85877085413253 LTS-005 chr19 8140372 8145786 5415 * FBN3 NA 0 NA 1.468 1 NA NA NA NA NA LTS-005 chr19 8145787 8159346 13560 * FBN3 0.221118550967359 4 0.16596661310838 1.50268206430784 67 1.25635843760645 10 8 2 -6.73425567981385 LTS-005 chr19 8159347 8159351 5 * FBN3 NA 0 NA 1.071 1 NA NA NA NA NA LTS-005 chr19 8159352 8211089 51738 * FBN3 0.332565407632984 10 0.219726825348608 1.08321209045818 228 0.454855645924013 3 2 1 -6.74738507457749 LTS-005 chr19 8211090 8212263 1174 * FBN3 0.466 1 NA 0.956801945532158 9 0.197958820072369 4 4 0 -5.76462983210055 LTS-005 chr19 8212264 8386701 174438 * c(NDUFA7, CD320, RPS28, CERS4, FBN3) 0.456113175053261 13 0.0407153974528506 0.992731561531473 129 0.436580299511455 4 2 2 -8.01716427372187 LTS-005 chr19 8386702 8434242 47541 * c(KANK3, ANGPTL4, RPS28) 0 1 NA 0.94656842774541 113 0.365481353971906 3 3 0 -5.76747356271778 LTS-005 chr19 8434243 9027262 593020 * c(RAB11B-AS1, MIR4999, ZNF558, ACTL9, OR2Z1, MYO1F, HNRNPM, ANGPTL4, MARCH2, ADAMTS10, PRAM1, ZNF414, MBD3L1, RAB11B, MUC16) 0.302905937386289 52 0.180227638025625 1.03456997520904 981 0.416664134653731 4 3 1 -6.74074305487816 LTS-005 chr19 9027263 9047267 20005 * MUC16 0.443 1 NA 0.992622932112912 67 0.276096743150786 4 4 0 -5.76526871045749 LTS-005 chr19 9047268 10745729 1698462 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, CDKN2D, ZNF266, CDC37, FDX1L, RAVER1, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, DNMT1, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ZNF699, C3P1, OR7G2, OR7G3, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, PIN1, S1PR5, ZNF562, FBXL12, C19orf66, PPAN, SLC44A2, ZNF317, UBL5, KRI1, SNORD105, PPAN-P2RY11, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, ZNF426, NA NA NA NA NA NA NA NA NA LTS-005 ANGPTL6, ZNF559, ATG4D, EIF3G, S1PR2, ZNF561, OLFM2, MUC16, KEAP1) 0.423312208581159 142 0.128810465608756 1.03827400335243 3672 0.49614826683389 4 2 2 -6.77715009470986 LTS-005 NA NA NA NA LTS-005 chr19 10745730 10748317 2588 * SLC44A2 0 1 NA 1.04847452717504 21 0.531865409935365 4 4 0 -5.76441213825556 LTS-005 chr19 10748318 10906804 158487 * c(MIR4748, ILF3-AS1, DNM2, ILF3, SLC44A2, MIR638, QTRT1) 0.338304428154296 9 0.238564864228671 1.03254001937582 257 0.35363632095012 4 2 2 -6.76161001726452 LTS-005 chr19 10906805 10928119 21315 * c(DNM2, MIR199A1) 0.483 1 NA 1.08413062934649 45 0.211516880908099 4 4 0 -5.76446885849397 LTS-005 chr19 10928120 11688120 760001 * c(CARM1, TMED1, CCDC151, ZNF653, SWSAP1, CCDC159, CNN1, SPC24, DNM2, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, TMEM205, LDLR, MIR199A1, ECSIT, ACP5, PRKCSH, ANGPTL8, RGL3, DOCK6, PLPPR2, SMARCA4, YIPF2, ELOF1, C19orf52, RAB3D) 0.43220009164396 47 0.104396778334149 1.05002764695037 1675 0.25538038770446 4 2 2 -6.83319655575768 LTS-005 chr19 11688121 12757394 1069274 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, MAN2B1, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.450435207798856 63 0.104689160262645 0.944840558985495 1755 0.311140616428542 4 2 2 -7.02761159041998 LTS-005 chr19 12757395 12875807 118413 * c(DHPS, SNORD41, HOOK2, TNPO2, MAN2B1, ASNA1, WDR83OS, BEST2, C19orf43, FBXW9, WDR83) 0.440478221997943 21 0.10400407501174 1.05006669141222 545 0.321222317825162 4 2 2 -6.87316077450627 LTS-005 chr19 12875808 12876964 1157 * HOOK2 0.467 1 NA 1.04891652054111 23 0.153690580278699 4 4 0 -5.76442038903199 LTS-005 chr19 12876965 13246595 369631 * c(RNASEH2A, KLF1, NACC1, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, HOOK2, JUNB, LYL1, NFIX, TRMT1, RAD23A, PRDX2, CALR, RTBDN, GADD45GIP1) 0.186231414801916 9 0.238340151417628 1.03206722192163 851 0.262139651786558 4 3 1 -6.83938731536279 LTS-005 chr19 13246596 13264549 17954 * c(NACC1, STX10, IER2) 0.488 1 NA 1.058650201671 75 0.212216677474223 4 4 0 -5.76443149596013 LTS-005 chr19 13264550 17273893 4009344 * c(MIR1470, LOC100507373, DDX39A, AKAP8, KLF2, CHERP, GIPC1, ILVBL, CYP4F8, MISP3, PGLYRP2, CIB3, RLN3, CALR3, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, LINC00905, ADGRL1, SIN3B, BRD4, CASP14, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, AKAP8L, CPAMD8, OR10H5, NWD1, LOC284454, C19orf53, ADGRE2, DNAJB1, NANOS3, PALM3, CLEC17A, CYP4F24P, OR7A10, CYP4F3, MIR181C, RAB8A, MYO9B, NDUFB7, NA NA NA NA NA NA NA NA NA LTS-005 NOTCH3, CC2D1A, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, CYP4F11, EPS15L1, WIZ, RFX1, C19orf67, RASAL3, SLC1A6, ZSWIM4, UCA1, CYP4F12, MIR639, TPM4, CACNA1A, TMEM38A, SMIM7, C19orf57, EPHX3, PODNL1, SLC35E1, CCDC130, C19orf44, MRI1, ZNF333, ADGRE3, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, SAMD1, DCAF15, HAUS8, MED26, IL27RA, TECR, IER2, ADGRE5) 0.424087014549586 177 0.132722224999174 1.0362295592617 5534 0.344626068467087 4 2 2 -6.79234747777289 LTS-005 NA NA NA NA LTS-005 chr19 17273894 17308490 34597 * MYO9B 0 1 NA 0.978263317769137 81 0.537530326735612 4 4 0 -5.76497175952528 LTS-005 chr19 17308491 17386639 78149 * c(NR2F6, BABAM1, MYO9B, USE1, OCEL1, USHBP1) 0.305578773661021 12 0.226524933405896 1.05204552257268 284 0.408905291967753 4 3 1 -6.73778269861829 LTS-005 chr19 17386640 17387176 537 * BABAM1 0.492 1 NA 0.935055692404915 5 0.160134943094879 3 3 0 -5.76455524475358 LTS-005 chr19 17387177 17397700 10524 * c(ANKLE1, BABAM1) 0.464615542783344 9 0.0224276614920058 1.09366285537202 88 0.225051555396107 4 2 2 -10.2540318630586 LTS-005 chr19 17397701 17445971 48271 * c(ANKLE1, ANO8, MRPL34, DDA1, ABHD8, GTPBP3) 0.208 1 NA 1.05470448707977 185 0.209310329937551 4 4 0 -5.76452504650668 LTS-005 chr19 17445972 17756858 310887 * c(TMEM221, NXNL1, FAM129C, UNC13A, PGLS, SLC27A1, BST2, COLGALT1, PLVAP, GTPBP3, MVB12A) 0.30270439630721 17 0.217714971519024 1.07481102848949 725 0.495935481084346 4 3 1 -6.73677411795022 LTS-005 chr19 17756859 17763392 6534 * UNC13A 0.493 1 NA 1.01290755676755 29 0.23625883881086 4 4 0 -5.76461203123683 LTS-005 chr19 17763393 17894878 131486 * c(UNC13A, FCHO1, MAP1S) 0.47394904255064 9 0.026 1.02950247515679 261 0.239464124888789 4 2 2 -10.1309197499023 LTS-005 chr19 17894879 17919224 24346 * c(B3GNT3, FCHO1) 0 1 NA 1.37971190959487 39 1.25353177984322 5 5 0 -5.7644450353913 LTS-005 chr19 17919225 18369211 449987 * c(B3GNT3, IFI30, CCDC124, MAST3, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, KCNN1, PDE4C, PIK3R2, RAB3A, RPL18A, SLC5A5, LOC729966, KIAA1683, MPV17L2) 0.366769141491764 32 0.193568669048213 1.03143701055924 992 0.420030875371199 4 2 2 -6.74333807780653 LTS-005 chr19 18369212 18375563 6352 * KIAA1683 0.488 1 NA 1.29843651838788 11 0.264125280191737 5 5 0 -5.76441015176578 LTS-005 chr19 18375564 19369489 993926 * c(MEF2B, MIR3188, MIR3189, SUGP2, CERS1, COPE, LRRC25, NR2C2AP, COMP, NCAN, SSBP4, CRTC1, FKBP8, TMEM59L, LSM4, GDF1, SLC25A42, JUND, HAPLN4, BORCS8-MEF2B, ISYNA1, DDX49, PGPEP1, TMEM161A, C19orf60, KLHL26, UPF1, BORCS8, UBA52, KXD1, KIAA1683, ELL, RFXANK, CRLF1, ARMC6, HOMER3, GDF15) 0.448789388602593 61 0.0880477888124063 1.0422770982556 1779 0.23652926825471 4 2 2 -6.99875995515416 LTS-005 chr19 19369490 19372185 2696 * HAPLN4 0.417 1 NA 1.21911747609166 13 0.228458069990074 5 5 0 -5.76453105112054 LTS-005 chr19 19372186 19654917 282732 * c(CILP2, MAU2, YJEFN3, HAPLN4, NDUFA13, TM6SF2, GATAD2A, SUGP1, TSSK6) 0.288604129010259 9 0.247992439400882 1.05797058418638 623 0.38247358986781 4 3 1 -6.73323844033838 LTS-005 chr19 19654918 19656039 1122 * CILP2 0.471 1 NA 1.05454259049262 25 0.320746436717022 4 4 0 -5.76441129774294 LTS-005 chr19 19656040 19770774 114735 * c(CILP2, GMIP, ATP13A1, PBX4, LPAR2) NA 0 NA 1.06748953591347 313 0.21421386264806 4 NA NA -5.76441206872613 LTS-005 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.659 1 NA NA NA NA NA LTS-005 chr19 19772755 23837048 4064294 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.433484855975262 40 0.090963922828835 0.898347372841926 1314 0.287987790478085 3 2 1 -7.31171384427096 LTS-005 chr19 23837049 23837145 97 * ZNF675 NA 0 NA 1.147 1 NA NA NA NA NA LTS-005 chr19 23837146 24115958 278813 * c(ZNF681, ZNF675, RPSAP58, ZNF726) 0.27017011182113 3 0.246538029520802 1.05503586777608 189 0.329477095444251 4 3 1 -6.73562113391073 LTS-005 chr19 24115959 24345121 229163 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.947466104954439 79 0.286268851330012 4 NA NA -5.7886377284256 LTS-005 chr19 28247625 30017670 1770046 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.423 1 NA 1.05828615983891 29 0.276395340475293 4 4 0 -5.76574343221962 LTS-005 chr19 30017671 35227217 5209547 * c(SCGB2B3P, THEG5, UBA2, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, DPY19L3, ZNF507, LSM14A, GPI, SCGB2B2, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, ZNF302, SLC7A10, TSHZ3, SCGB1B2P, CHST8, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, PDCD5, FAAP24, TDRD12, NA, KIAA0355, ZNF536) 0.410279570937832 76 0.132453397299353 1.05090249682038 2411 0.408387995921204 4 2 2 -6.75281354612728 LTS-005 chr19 35227218 35230037 2820 * ZNF181 NA 0 NA 1.411 1 NA NA NA NA NA LTS-005 chr19 35230038 35506729 276692 * c(LINC00904, ZNF792, ZNF599, ZNF181, LOC400685, GRAMD1A, ZNF30) 0.369144570616192 14 0.0506964680045057 1.39034474318605 318 0.334627380011508 5 3 2 -6.76313566388496 LTS-005 chr19 35506730 35514371 7642 * GRAMD1A 0 1 NA 1.63117739460506 41 1.25018502630611 6 6 0 -5.7644229825535 LTS-005 chr19 35514372 36211546 697175 * c(HPN-AS1, LINC01531, TMEM147-AS1, MIR5196, UPK1A-AS1, TMEM147, UPK1A, COX6B1, FAM187B, LGI4, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR1, FFAR3, FFAR2, HPN, SBSN, KRTDAP, MAG, ATP4A, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, RBM42, DMKN, CD22, KMT2B) 0.289289252867453 49 0.129603030744776 1.45032311542829 1507 0.694324946493652 7 5 2 -6.77110605991241 LTS-005 chr19 36211547 36212160 614 * KMT2B 0.411 1 NA 1.38124931340907 13 0.323504983514898 5 5 0 -5.76442381322541 LTS-005 chr19 36212161 37488705 1276545 * c(LOC100134317, LINC00665, HCST, TBCB, ARHGAP33, HSPB6, COX7A1, ZNF565, PROSER3, ZNF567, SYNE4, THAP8, U2AF1L4, ZNF345, CLIP3, WDR62, ZFP82, ZNF790-AS1, APLP1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, NPHS1, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, KMT2B) 0.349387037145036 79 0.0697457919516953 1.44371383314383 2655 0.410061338724323 6 4 2 -6.75442343308794 LTS-005 chr19 37488706 37579887 91182 * c(ZNF420, ZNF568) NA 0 NA 0.864 1 NA NA NA NA NA LTS-005 chr19 37579888 38382328 802441 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF420, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.427200582279733 34 0.115304896909615 1.01997366278486 1066 0.267472633934908 4 2 2 -6.81057696845921 LTS-005 chr19 38382329 38383752 1424 * WDR87 0 1 NA 1.21665310861288 16 2.41252479693647 5 5 0 -5.76441074488583 LTS-005 chr19 38383753 38702821 319069 * c(SIPA1L3, DPF1, WDR87) 0.30627625260332 3 0.241682298345024 0.972396514093722 292 0.29734362465537 4 3 1 -6.75668515917113 LTS-005 chr19 38702822 38702899 78 * DPF1 NA 0 NA 0.883 1 NA NA NA NA NA LTS-005 chr19 38702900 38991503 288604 * c(SPINT2, RASGRP4, FAM98C, GGN, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, DPF1, YIF1B, KCNK6, PPP1R14A) 0.223349742101538 11 0.209050755037666 0.944042873933791 824 0.366379987252606 4 3 1 -6.80547198480901 LTS-005 chr19 38991504 38993547 2044 * RYR1 0.497 1 NA 0.995996891403129 9 0.236476801775095 4 4 0 -5.76451894585236 LTS-005 chr19 38993548 39068641 75094 * RYR1 0.419652272881119 12 0.134495578388513 0.924070241957712 247 0.349154460565154 4 2 2 -6.77051823886739 LTS-005 chr19 39068642 39077277 8636 * RYR1 0 1 NA 0.923812960368447 33 0.458557008781929 3 3 0 -5.76463470705658 LTS-005 chr19 39077278 39138609 61332 * c(MAP4K1, EIF3K, RYR1, ACTN4) 0.229021908501911 5 0.240680701345164 0.950483097579206 185 0.448097996222441 5 4 1 -6.75137404977853 LTS-005 chr19 39138610 39331137 192528 * c(CAPN12, ECH1, HNRNPL, LGALS4, LGALS7, LGALS7B, ACTN4) 0.136327428884138 16 0.0538353972772562 0.611312248600297 368 0.267318897268871 2 2 0 -6.75172171477596 LTS-005 chr19 39331138 39332205 1068 * HNRNPL NA 0 NA 0.804 1 NA NA NA NA NA LTS-005 chr19 39332206 39374236 42031 * c(RINL, SIRT2, HNRNPL) 0 2 0 0.941113596556286 132 0.348484493940219 0 0 0 -Inf LTS-005 chr19 39374237 39379855 5619 * SIRT2 0.426 1 NA 1.17589180441796 9 0.25942869926051 4 4 0 -5.76486765848426 LTS-005 chr19 39379856 40389749 1009894 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, FBXO27, LGALS16, EID2, FBL, SIRT2, IFNL2, IFNL3, IFNL1, LGALS13, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.394767262567593 41 0.135388524030009 0.950372420780842 1631 0.330555856946874 4 2 2 -6.80928869943669 LTS-005 chr19 40389750 40406047 16298 * FCGBP 0 2 0 0.569278517626245 39 0.492858765249367 0 0 0 -Inf LTS-005 chr19 40406048 40407945 1898 * FCGBP NA 0 NA 0.76 1 NA NA NA NA NA LTS-005 chr19 40407946 45655658 5247713 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, MIR4531, LIPE-AS1, TOMM40, CEACAM5, RABAC1, ZNF234, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, CLASRP, EGLN2, ZNF526, CLPTM1, CEACAM20, IRGQ, ZNF428, C19orf47, IGSF23, LYPD4, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF296, DEDD2, ZNF780B, MEGF8, CADM4, ERF, NA NA NA NA NA NA NA NA NA LTS-005 AKT2, CYP2G1P, CIC, ETHE1, PRG1, CBLC, PLD3, ZNF285, LYPD3, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, ZNF546, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, B3GNT8, KCNN4, CEACAM22P, CEACAM16, PINLYP, LIPE, BCAM, MAP3K10, PSG8, CEACAM6, ATP1A3, PAFAH1B3, PLAUR, RAB4B, POU2F2, ATP5SL, AXL, SMG9, IRGC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CEACAM19, PSMC4, CD177, PRX, SPTBN4, PVR, NECTIN2, BCKDHA, RELB, BCL3, RPS19, CEACAM1, DMRTC2, TMEM91, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, MIR641, TGFB1, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF576, GEMIN7, COQ8B, CNTD2, ITPKC, B9D2, MIA, TEX101, LTBP4, CNFN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 FCGBP, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, ZNF235, CD79A) 0.391815468842116 212 0.142264270589 0.933625749979261 8291 0.294408053211855 3 2 1 -7.16283305223429 LTS-005 NA NA NA NA LTS-005 chr19 45655659 45731009 75351 * c(NKPD1, BLOC1S3, TRAPPC6A, EXOC3L2) 0 1 NA 0.930065659017838 129 0.471986544776027 3 3 0 -5.76652979821218 LTS-005 chr19 45731010 46001819 270810 * c(PPP1R13L, CD3EAP, CKM, PPM1N, KLC3, ERCC1, ERCC2, FOSB, MARK4, RTN2, EXOC3L2) 0.186518980798047 12 0.205020767610296 0.937033541566827 568 0.433748004224934 5 4 1 -6.85911687845512 LTS-005 chr19 46001820 46002453 634 * PPM1N 0.414 1 NA 0.839505385082003 16 0.176080284718837 3 3 0 -5.76441013527399 LTS-005 chr19 46002454 50123713 4121260 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, DACT3-AS1, GFY, SAE1, RNU6-66P, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PTH2, CGB1, CGB2, LMTK3, AP2S1, ALDH16A1, NTN5, CRX, PPM1N, CCDC155, DACT3, SIX5, IGFL2, DBP, ZNF114, SPACA4, DMPK, DMWD, EMP3, FCGRT, CARD8, ZC3H4, FLT3LG, FBXO46, NA NA NA NA NA NA NA NA NA LTS-005 RPL13A, SYNGR4, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, MYPOP, NANOS2, KCNA7, IGFL1, KCNJ14, BHMG1, IGFL3, LHB, LIG1, MIR150, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, TRPM4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, BCAT2, RPL18, RPS11, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, FKRP, OPA3, CALM3, RSPH6A, SYMPK, GRWD1, CCDC8, ZNF541, SNORD35B, TEAD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PPFIA3, PLA2G4C, NAPA, PGLYRP1, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.400262403248942 223 0.13463980220656 0.929160044620695 7688 0.346495318148673 3 2 1 -7.01348001952572 LTS-005 NA NA NA NA LTS-005 chr19 50123714 50124668 955 * PRR12 NA 0 NA 1.34 1 NA NA NA NA NA LTS-005 chr19 50124669 50165300 40632 * c(IRF3, PRR12, SCAF1, RRAS) 0.415418145584686 5 0.0153850576859497 1.2539468337755 163 0.250525552262818 4 2 2 -8.07792919624334 LTS-005 chr19 50165301 51537477 1372177 * c(SNAR-F, SNAR-B2, SNAR-D, PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, KLK11, KLK8, FAM71E1, PNKP, SIGLEC11, JOSD2, IZUMO2, CPT1C, AP2A1, ADM5, ATF5, NUP62, NAPSB, KLK5, ZNF473, IL4I1, EMC10, MGC45922, KLK9, GPR32, PRMT1, C19orf81, KLK3, IRF3, KCNC3, KLK1, KLK2, SIGLEC16, LOC400710, KLK12, MYBPC2, SHANK1, VRK3, PTOV1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, TSKS, KLKP1, CLEC11A, SPIB, SNORD88A, NA NA NA NA NA NA NA NA NA LTS-005 SNORD88B, SNORD88C, NR1H2, TBC1D17, MYH14, FUZ, MED25, BCL2L12, SYT3, AKT1S1, C19orf48, ACPT, LRRC4B, NAPSA, KLK4) 0.369086856732129 95 0.169342385931616 0.964573454105874 3060 0.345075861273506 4 2 2 -6.81366985701093 LTS-005 NA NA NA NA LTS-005 chr19 51537478 51537619 142 * KLK12 NA 0 NA 0.859 1 NA NA NA NA NA LTS-005 chr19 51537620 52132749 595130 * c(LOC100129083, CLDND2, VSIG10L, C19orf84, ETFB, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, LIM2, IGLON5, KLK14, KLK12, NKG7, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, CD33, SIGLEC6) 0.39293176638662 47 0.112991293370013 0.898493376174876 1083 0.369858754364058 4 2 2 -6.81107965810021 LTS-005 chr19 52132750 52133048 299 * SIGLEC5 NA 0 NA 0.681 1 NA NA NA NA NA LTS-005 chr19 52133049 52196488 63440 * c(SIGLEC14, MIRLET7E, MIR99B, SIGLEC5) NA 0 NA 0.464397613772605 40 0.419381833698001 1 NA NA -5.77272600786919 LTS-005 chr19 52196489 54727001 2530513 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, LILRB3, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, MIR125A, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, NA NA NA NA NA NA NA NA NA LTS-005 ZNF331, ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CACNG8, CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.400578874271043 151 0.0960382668396913 0.911212876342894 4140 0.372299465318729 3 2 1 -6.95566255321677 LTS-005 NA NA NA NA LTS-005 chr19 54727002 54735497 8496 * c(LILRB3, LILRA6) NA 0 NA 1.806 1 NA NA NA NA NA LTS-005 chr19 54735498 54746606 11109 * c(LILRB3, LILRA6) 0.311618552074622 5 0.101861180044215 1.64010510253714 53 0.787871417699161 10 7 3 -6.7348481381818 LTS-005 chr19 54746607 55248041 501435 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.400340508430504 49 0.0905820089208451 0.887922557885943 1108 0.356288978848013 4 2 2 -6.82166345069733 LTS-005 chr19 55248042 55249998 1957 * KIR2DL3 NA 0 NA 0.626 1 NA NA NA NA NA LTS-005 chr19 55249999 55295061 45063 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.334502653478439 14 0.0896648521678685 0.875666562378615 43 1.86150301327678 6 4 2 -6.73935253690187 LTS-005 chr19 55295062 55297826 2765 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) NA 0 NA 0.114 1 NA NA NA NA NA LTS-005 chr19 55297827 55317599 19773 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.0688539272468146 69 0.0784053613091091 0 NA NA -6.79069189554564 LTS-005 chr19 55317600 55317613 14 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.024 1 NA NA NA NA NA LTS-005 chr19 55317614 55325680 8067 * c(KIR2DS4, KIR3DL1) 0.434 1 NA 0.0778284124633315 40 0.187579027790067 0 0 0 -5.82621189194237 LTS-005 chr19 55325681 55340983 15303 * c(KIR2DS4, KIR3DL1) 0.235 1 NA 0.0774571196561416 53 0.0653876128400271 0 0 0 -6.61901697354624 LTS-005 chr19 55340984 55341635 652 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.228 1 NA NA NA NA NA LTS-005 chr19 55341636 55351171 9536 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.258408112136004 39 0.259148991373871 1 NA NA -5.77734186393344 LTS-005 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.775 1 NA NA NA NA NA LTS-005 chr19 55358616 55900350 541735 * c(RNU6-64P, RDH13, COX6B2, TMEM190, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, TMEM150B, FAM71E2, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, GP6, PPP1R12C, EPS8L1, NLRP2, PTPRH, RPL28, SYT5, TNNI3, TNNT1, BRSK1, KMT5C, NCR1) 0.347179913997125 85 0.163147608921856 0.91743958637349 1584 0.424455586057825 3 2 1 -6.74764448178596 LTS-005 chr19 55900351 55900431 81 * RPL28 NA 0 NA 1.337 1 NA NA NA NA NA LTS-005 chr19 55900432 56520150 619719 * c(SBK3, ZNF865, U2AF2, NLRP13, NLRP8, NLRP5, ZNF524, ZNF784, NLRP4, ZNF579, NLRP11, UBE2S, SSC5D, CCDC106, EPN1, NLRP9, RFPL4A, ZNF580, ZNF581, NAT14, RPL28, SBK2, SHISA7, RFPL4AL1, ISOC2, FIZ1, ZNF628) 0.375357569904954 70 0.130252807220497 1.07088417396094 1398 0.547686029496602 4 2 2 -6.74026336733497 LTS-005 chr19 56520151 56544090 23940 * NLRP5 0 1 NA 1.04933860237817 57 0.231058543992382 4 4 0 -5.76450008406353 LTS-005 chr19 56544091 57062148 518058 * c(ZNF667-AS1, NLRP5, ZNF787, ZFP28, ZNF542P, ZNF582, ZNF583, ZSCAN5B, ZNF582-AS1, ZNF444, ZNF471, ZNF667, ZSCAN5A, GALP) 0.296216334242457 24 0.229677463672082 1.05480420399216 570 0.8284502842355 4 3 1 -6.73439944035948 LTS-005 chr19 57062149 57132968 70820 * c(ZFP28, ZNF470, ZNF71) 0.498 1 NA 0.986069174649447 95 0.217579033020883 4 4 0 -5.77021719483118 LTS-005 chr19 57132969 59074672 1941704 * c(A1BG, MIMT1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF773, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA LTS-005 VN1R1, ZNF304, USP29, ZNF71, RPS5, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, ZNF551, UBE2M, ZNF835, ZNF264) 0.437431477288554 115 0.107803105403816 1.02640760348937 3732 0.589151002830475 4 2 2 -6.8540511174078 LTS-005 NA NA NA NA LTS-005 chr19 59074673 59084001 9329 * c(MZF1-AS1, MZF1) NA 0 NA 1.018636949516 35 0.144806233906387 4 NA NA -5.7650245126731 LTS-005 chr20 68260 76962 8703 * DEFB125 0.414 1 NA 1.20448864139164 11 0.372662606363743 5 5 0 -5.76461905092683 LTS-005 chr20 76963 741001 664039 * c(RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, DEFB125, DEFB128, DEFB132, TRIB3, SOX12, TCF15, NRSN2, DEFB126, ZCCHC3, SCRT2) 0.422111285952441 34 0.136050612502151 1.08013542488896 965 0.339061664656347 4 2 2 -6.76735954385833 LTS-005 chr20 741002 741176 175 * SLC52A3 0 1 NA 1.52129154688012 5 2.40692018978611 6 6 0 -5.7644101348799 LTS-005 chr20 741177 1287798 546622 * c(SLC52A3, RSPO4, C20orf202, ANGPT4, TMEM74B, RAD21L1, FAM110A, PSMF1, SNPH) 0.189062187024709 10 0.232652721645135 1.15444046540953 546 0.53512674071528 5 4 1 -6.7738211693018 LTS-005 chr20 1287799 1288223 425 * SNPH 0.449 1 NA 1.43107184186128 9 0.939450105114689 6 6 0 -5.76441134115613 LTS-005 chr20 1288224 1538998 250775 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPD, FKBP1A, SDCBP2, SIRPB2, NSFL1C, SNPH) 0.307732314466954 14 0.21258618161909 1.15612612883895 384 0.516846331552728 4 3 1 -6.74303181831742 LTS-005 chr20 1538999 1539444 446 * character(0) 0.465 1 NA 1.1532295069232 9 0.546120407968792 4 4 0 -5.76441532199523 LTS-005 chr20 1539445 1559302 19858 * SIRPB1 0.425008374507662 3 0.0400166631958905 1.21736463162717 32 0.477844382652196 4 2 2 -7.16889791863187 LTS-005 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.074 1 NA NA NA NA NA LTS-005 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0642741022148583 39 0.02321352507244 0 NA NA -11.7931751308006 LTS-005 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.17 1 NA NA NA NA NA LTS-005 chr20 1600391 16496334 14895944 * c(SNORD119, SNAP25-AS1, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, MACROD2-AS1, ISM1-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, MACROD2, ISM1, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, UBOX5, BTBD3, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, GNRH2, TMEM230, LOC339593, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, ESF1, NA NA NA NA NA NA NA NA NA LTS-005 TRMT6, PDYN, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AVP, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, PRNP, TMX4, GPCPD1, CPXM1, PAK5, MAVS, EBF4, PTPRA, FASTKD5, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, NDUFAF5, ZNF343, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.423721082768619 254 0.107171103911821 1.13042028804287 7860 0.412715687311144 4 2 2 -6.95402078298017 LTS-005 NA NA NA NA LTS-005 chr20 16496335 16506735 10401 * KIF16B NA 0 NA 0.883 1 NA NA NA NA NA LTS-005 chr20 16506736 18005113 1498378 * c(DSTN, BANF2, SNX5, PCSK2, KIF16B, OTOR, OVOL2, RRBP1, BFSP1, SNRPB2, SNORD17, MGME1) 0.450026699480492 14 0.0671414776570938 1.02538111530423 662 0.271925254514812 4 2 2 -7.20332662671272 LTS-005 chr20 18005114 18005341 228 * OVOL2 0 1 NA 1.60094432643067 3 1.73750290167623 6 6 0 -5.76441023633032 LTS-005 chr20 18005342 18505740 500399 * c(PET117, MIR3192, SEC23B, POLR3F, RBBP9, LINC00851, DZANK1, KAT14, OVOL2, ZNF133) 0.291099405273391 16 0.229257269968333 1.05551425193302 544 0.3310339131122 4 3 1 -6.73380280854347 LTS-005 chr20 18505741 18794714 288974 * c(C20orf78, LOC100270804, SEC23B, SCP2D1, LINC00652, LINC00493, DTD1) 0.441 1 NA 1.0639979435127 143 0.28607444968286 4 4 0 -5.76445136792106 LTS-005 chr20 18794715 23352480 4557766 * c(C20orf78, LOC100130264, LINC01432, LINC00261, SCP2D1, LINC00656, XRN2, CD93, CFAP61, LOC284788, NXT1, FOXA2, INSM1, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, KIZ, RALGAPA2, SLC24A3, GZF1, NKX2-4, SSTR4, THBD) 0.42232160614527 48 0.148054421420394 1.07866538129577 1876 0.444299709695215 4 2 2 -6.76327613766142 LTS-005 chr20 23352481 23353538 1058 * GZF1 0 1 NA 1.10123165556158 25 0.442587196681814 4 4 0 -5.76441304544602 LTS-005 chr20 23353539 23804408 450870 * c(CST8, CSTL1, CST9L, CST9, CST11, CST1, CST2, CST3, CST4, CST13P, NAPB, GZF1) 0.319052029504047 12 0.212298014521326 1.06644983747726 325 0.340558069091824 4 3 1 -6.74793878558904 LTS-005 chr20 23804409 23856663 52255 * c(CST2, CST5) 0.455 1 NA 0.945601203236879 21 0.433169586277927 3 3 0 -5.76676675664186 LTS-005 chr20 23856664 25052308 1195645 * c(CST5, VSX1, FLJ33581, APMAP, SYNDIG1, ACSS1, CST7, GGTLC1) 0.462809282867933 17 0.0254733136023242 1.04755322367878 355 0.313178387928848 4 2 2 -9.65860277173736 LTS-005 chr20 25052309 25061991 9683 * VSX1 0 1 NA 1.0336568980506 55 0.470815606531406 4 4 0 -5.76443926870966 LTS-005 chr20 25061992 25428750 366759 * c(ABHD12, LOC284798, VSX1, PYGB, ENTPD6, GINS1) 0.259610916599776 10 0.22646029821288 1.04937953390171 430 0.367142905957792 4 3 1 -6.74143879039894 LTS-005 chr20 25428751 25456888 28138 * c(NINL, GINS1) 0.344 1 NA 1.0780484051386 65 0.573723770558486 4 4 0 -5.76441402320044 LTS-005 chr20 25456889 26188981 732093 * c(LOC100134868, NANP, NCOR1P1, NINL, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.367148862930884 34 0.125312002773939 1.03049313577654 371 0.522190691070563 4 2 2 -6.75446934158138 LTS-005 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.706119671075929 3 0.00173205080756888 2 NA NA -5.92050903601875 LTS-005 chr20 29625845 29625876 32 * FRG1BP 0.366 1 NA 1.038 1 NA NA NA NA NA LTS-005 chr20 29625877 30438403 812527 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, MLLT10P1, LINC00028, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.285331142531558 25 0.173089215916725 1.03781839525447 654 0.442971822943835 4 3 1 -6.73516642521469 LTS-005 chr20 30438404 30452782 14379 * DUSP15 0.456 1 NA 1.27641876650666 27 0.500337957010131 5 5 0 -5.76441956526539 LTS-005 chr20 30452783 31630540 1177758 * c(DUSP15, TSPY26P, BPIFB6, NOL4L, CCM2L, SUN5, LOC149950, COMMD7, TTLL9, ASXL1, DNMT3B, MAPRE1, POFUT1, C20orf203, HCK, XKR7, PLAGL2, BPIFB2, PDRG1, KIF3B, TM9SF4) 0.415195827350619 54 0.147838322034291 1.03831597550917 2037 0.317240554671171 4 2 2 -6.75670994697464 LTS-005 chr20 31630541 31631124 584 * BPIFB6 0 1 NA 1.31751503268972 7 1.76148032983084 5 5 0 -5.76441016051436 LTS-005 chr20 31631125 31685566 54442 * c(BPIFB6, BPIFB4, BPIFB3) 0.267804920704153 11 0.235091239541355 1.12216174229471 159 1.14710136774668 4 3 1 -6.73650801043073 LTS-005 chr20 31685567 31688260 2694 * BPIFB4 0.48 1 NA 1.4868452968677 3 0.904673053281313 6 6 0 -5.76441151724996 LTS-005 chr20 31688261 33879731 2191471 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, PXMP4, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, BPIFB4, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, BPIFA4P, EIF6, ASIP, BPIFA1, CDK5RAP1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2, BPIFB1) 0.393459209163156 49 0.165242658095365 1.05828261830971 2725 0.304322610008786 4 2 2 -6.73470899184212 LTS-005 chr20 33879732 36146208 2266477 * c(TGIF2-C20orf24, RBM12, MYL9, BLCAP, CEP250, FAM83C, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, SRC, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.412513393121622 97 0.140441047115068 0.993902492423168 3429 0.309448816143749 4 2 2 -6.82272630174229 LTS-005 chr20 36146209 37612304 1466096 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, SNHG11, SLC32A1, ADIG, PPP1R16B, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, NNAT, CTNNBL1, RALGAPB, RPRD1B, DHX35, BPI, SNORA71E, SNORA71C, SNORA71D, TGM2, ACTR5, FAM83D, KIAA1755, TTI1) 0.378273270282873 50 0.112042209611797 0.891239772278174 1686 0.323741685519512 3 2 1 -6.79573476957511 LTS-005 chr20 37612305 37667182 54878 * DHX35 0.321 1 NA 0.872523683536092 95 0.185299275499285 3 3 0 -5.76582025531455 LTS-005 chr20 37667183 40706277 3039095 * c(PTPRT, ZHX3, LOC339568, PLCG1, DHX35, LPIN3, TOP1, CHD6, EMILIN3, MAFB) 0.15802463948006 9 0.174553716660517 0.882136277223097 1267 0.322396053728389 3 3 0 -6.85848318505148 LTS-005 chr20 40706278 40706295 18 * PTPRT 0.333 1 NA 1.40333907556106 3 1.56836315947551 5 5 0 -5.76441016004439 LTS-005 chr20 40706296 45195168 4488873 * c(ADA, ACOT8, ZNF663P, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, SGK2, WFDC2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, RBPJL, DNTTIP1, FITM2, WFDC12, SPATA25, OCSTAMP, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, GTSF1L, WFDC5, WFDC13, WFDC11, WFDC9, L3MBTL1, TP53TG5, WFDC10B, HNF4A, KCNS1, SPINT4, MMP9, MYBL2, SLC35C2, IFT52, OSER1, PIGT, PI3, PLTP, CTSA, ZNF334, DBNDD2, EPPIN, JPH2, NA NA NA NA NA NA NA NA NA LTS-005 SLC12A5, NCOA5, KCNK15, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, SLPI, STK4, TNNC2, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, MATN4, WISP2, SYS1, WFDC8, SNX21, ZSWIM1, CD40) 0.357784054877053 94 0.124317095904062 0.883857716479932 5018 0.276741928975062 3 2 1 -6.82537668946007 LTS-005 NA NA NA NA LTS-005 chr20 45195169 45204266 9098 * SLC13A3 0.336 1 NA 1.09380931285887 5 0.190211724139181 4 4 0 -5.76449148165387 LTS-005 chr20 45204267 45855889 651623 * c(MIR3616, TP53RK, EYA2, ZMYND8, SLC13A3, SLC2A10) 0.156804009471903 9 0.20983267143131 0.891806944186842 417 0.59194161336066 3 3 0 -6.79270740288182 LTS-005 chr20 45855890 45858405 2516 * ZMYND8 0.451 1 NA 1.02098884566101 7 0.341582103356328 4 4 0 -5.76443711362208 LTS-005 chr20 45858406 47240942 1382537 * c(LOC100131496, ZMYND8, LINC00494, SULF2, PREX1, NCOA3) 0.4381895536636 11 0.0400681238075174 0.859086036005697 475 0.1995590193476 4 2 2 -8.36248445543411 LTS-005 chr20 47240943 47269963 29021 * PREX1 0.49 1 NA 1.07108010513575 127 0.183062171898381 4 4 0 -5.76441270107617 LTS-005 chr20 47269964 47273664 3701 * PREX1 0 1 NA 1.18171133743173 15 1.25795671437379 5 5 0 -5.76442243506615 LTS-005 chr20 47273665 48698923 1425259 * c(SNORD12B, TRERNA1, ARFGEF2, CSE1L, SLC9A8, SNORD12C, KCNB1, TMEM189-UBE2V1, ZFAS1, DDX27, RNF114, ZNFX1, PTGIS, PREX1, SNAI1, STAU1, SNORD12, UBE2V1, B4GALT5, SPATA2) 0.301821653937895 14 0.21118118880595 0.99484469418908 1673 0.268609243762125 4 3 1 -6.79676401332301 LTS-005 chr20 48698924 48808011 109088 * c(CEBPB, TMEM189, TMEM189-UBE2V1, UBE2V1) 0.459 1 NA 0.951258106236694 119 0.244504660746794 4 4 0 -5.77921129196673 LTS-005 chr20 48808012 52788309 3980298 * c(MIR3194, MIR4756, ATP9A, CEBPB, TSHZ2, FAM65C, CYP24A1, ADNP, MOCS3, LINC01270, KCNG1, SUMO1P1, NFATC2, BCAS4, ZFP64, SALL4, PTPN1, MIR645, ZNF217, PARD6B, BCAS1, DPM1) 0.451552257145417 57 0.0677463063943355 1.00412571187532 1914 0.295144363457552 4 2 2 -7.30077235972454 LTS-005 chr20 52788310 52788389 80 * CYP24A1 NA 0 NA 1.465 1 NA NA NA NA NA LTS-005 chr20 52788390 59830007 7041618 * c(MIR298, CDH4, MIR4325, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4532, MIR4533, MIR5095, SYCP2, FAM210B, PHACTR3, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, SPO11, GNAS, C20orf197, MIR646HG, FAM209B, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, DOK5, PMEPA1, CASS4, RAB22A, CDH26, FAM217B, BMP7, AURKA, NA NA NA NA NA NA NA NA NA LTS-005 TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, STX16, VAPB) 0.414116282772321 101 0.137208152198413 1.04855587259859 3865 0.330093759810862 4 2 2 -6.76603813476488 LTS-005 NA NA NA NA LTS-005 chr20 59830008 59908171 78164 * CDH4 NA 0 NA 1.4 1 NA NA NA NA NA LTS-005 chr20 59908172 60776354 868183 * c(CDH4, MIR1257, LSM14B, SS18L1, MTG2, PSMA7, TAF4) 0.402515872531484 21 0.138757204875141 1.17578129355742 547 0.408802168835249 4 2 2 -6.76646012286251 LTS-005 chr20 60776355 60791071 14717 * c(HRH3, MTG2) 0 1 NA 1.16901530150876 42 0.818138913773184 4 4 0 -5.76451631045562 LTS-005 chr20 60791072 60913506 122435 * c(MIR4758, ADRM1, HRH3, LAMA5, OSBPL2) 0.282214574163953 16 0.209513633207961 1.27046192294917 546 0.530060227986919 4 3 1 -6.74099158311349 LTS-005 chr20 60913507 60920700 7194 * LAMA5 0.45 1 NA 0.998112226138784 9 0.105678758508983 4 4 0 -5.76621413809844 LTS-005 chr20 60920701 61975953 1055253 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, C20orf166-AS1, SLCO4A1, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, MRGBP, ARFGAP1, COL20A1, RPS21, SLC17A9, LOC63930, HAR1A, HAR1B, BIRC7, CABLES2) 0.403249602335421 87 0.10797402714213 1.22220634496688 1985 0.434632340133156 5 3 2 -6.77490534070879 LTS-005 chr20 61975954 61976714 761 * CHRNA4 0.385 1 NA 1.42952941771356 15 1.1499871717711 6 6 0 -5.76441162640445 LTS-005 chr20 61976715 62193587 216873 * c(CHRNA4, EEF1A2, KCNQ2, PTK6, SRMS, FNDC11, PPDPF, HELZ2) 0.172219166126922 9 0.229932659223908 1.19834561283427 492 0.723745395489504 6 5 1 -6.75749989535174 LTS-005 chr20 62193588 62194030 443 * HELZ2 0.44 1 NA 1.04259032092216 11 0.101187764262107 4 4 0 -5.76442598369454 LTS-005 chr20 62194031 62903535 709505 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, PCMTD2, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.373166721492442 53 0.162397975117321 1.20100878485495 1977 0.440770450099163 5 3 2 -6.746943063729 LTS-005 chr20 62903536 62959313 55778 * c(LINC00266-1, PCMTD2) NA 0 NA 1.1596344910392 75 0.502118608076395 4 NA NA -5.76529514007106 LTS-005 chr21 9825764 9825966 203 * MIR3648-1 0.177 1 NA 0.793006152469082 3 0.428019080571571 3 3 0 -5.76441229976032 LTS-005 chr21 9825967 11098709 1272743 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.298525837361826 44 0.120028086477042 0.826523724795659 186 0.919719907895848 4 3 1 -6.7990563237313 LTS-005 chr21 11098710 11098768 59 * c(BAGE, BAGE3) NA 0 NA 1.03516814395937 3 0.106809799800081 4 NA NA -5.76441323511693 LTS-005 chr21 14745307 14756794 11488 * character(0) 0.341 1 NA 0.738997326958083 11 0.642694682213455 3 3 0 -5.76468241098439 LTS-005 chr21 14756795 34636009 19879215 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, MIR3156-3, LINC01549, PAXBP1-AS1, LINC00159, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, OLIG2, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, LIPI, ABCC13, CXADR, LINC00189, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, HUNK, POTED, NA NA NA NA NA NA NA NA NA LTS-005 KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR2, APP, IL10RB, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, ANKRD20A11P, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, RBM11, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 LINC00113, NA, LINC00308, MRPL39, C21orf91, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SOD1, SNORA80A, HSPA13, TIAM1, KRTAP19-8, LINC01548, NRIP1, URB1-AS1, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1) 0.348694346752526 173 0.116093769608222 0.835051403401383 5704 0.339646051733634 3 2 1 -6.73666433890573 LTS-005 NA NA NA NA LTS-005 chr21 34636010 35230987 594978 * c(IL10RB-AS1, GART, DONSON, IFNAR1, IFNAR2, IFNGR2, IL10RB, DNAJC28, ITSN1, SON, TMEM50B, CRYZL1) 0.342802847195231 28 0.1060053657422 0.799211051635163 1160 1.64839129580131 3 2 1 -6.73776519410778 LTS-005 chr21 35230988 35239559 8572 * c(DONSON, ITSN1) 0 1 NA 0.801985326787541 9 1.14124133196173 3 3 0 -5.76441847070635 LTS-005 chr21 35239560 47609448 12369889 * c(LOC100129027, LOC100133286, MIR3197, ITGB2-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, RRP1B, POFUT2, ICOSLG, MORC3, CLDN14, DSCR9, NA NA NA NA NA NA NA NA NA LTS-005 NA, BACE2, DSCR10, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, DONSON, HLCS, HMGN1, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00114, LSS, MX1, MX2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 ATP5O, BRWD1, SLC37A1, PCBP3, LINC00160, SMIM11A, TSPEAR, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, AGPAT3, PWP2, PRDM15, LOC642852, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, FAM207A, PDXK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, RSPH1, UMODL1, ABCG1, DOPEY2, KCNE2) 0.277455309517353 377 0.11009520670912 0.763962001506781 11430 0.325973191341796 3 2 1 -7.56245194307665 LTS-005 NA NA NA NA LTS-005 chr21 47609449 47609535 87 * LSS NA 0 NA 0.714 1 NA NA NA NA NA LTS-005 chr21 47609536 47611206 1671 * LSS NA 0 NA 0.147327508400381 39 0.276005129135387 0 NA NA -5.7644268346645 LTS-005 chr21 47611207 47611789 583 * LSS NA 0 NA 1.002 1 NA NA NA NA NA LTS-005 chr21 47611790 48084282 472493 * c(DIP2A-IT1, MCM3AP-AS1, DIP2A, PRMT2, LSS, PCNT, C21orf58, YBEY, S100B, MCM3AP) 0.266882104696759 22 0.123003651443355 0.736505988514595 1092 0.259715563491388 3 2 1 -7.07818693944122 LTS-005 chr21 48084283 48084993 711 * PRMT2 NA 0 NA 0.672194990260605 15 0.0898115487324113 2 NA NA -5.76489645848339 LTS-005 chr22 16157787 16157860 74 * character(0) 0 1 NA 2.39 1 NA NA NA NA NA LTS-005 chr22 16157861 20783485 4625625 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-005 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UFD1L, ZNF74, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, RIMBP3, SCARF2, DGCR2) 0.41715924951489 169 0.136402262978776 1.05218796056747 4757 0.377311400218159 4 2 2 -6.76203697442569 LTS-005 NA NA NA NA LTS-005 chr22 20783486 20796143 12658 * c(KLHL22, SCARF2) 0 1 NA 1.03965708528513 59 0.228952022568536 4 4 0 -5.76452012628474 LTS-005 chr22 20796144 21307044 510901 * c(CRKL, POM121L4P, SERPIND1, MED15, PI4KA, TMEM191A, KLHL22, SNAP29) 0.292987545498127 13 0.214396888132794 1.02594025631784 699 0.416390880382815 4 3 1 -6.73669717609542 LTS-005 chr22 21307045 21307058 14 * CRKL 0.487 1 NA 3.957 1 NA NA NA NA NA LTS-005 chr22 21307059 22673639 1366581 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L8P, YPEL1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MAPK1, TMEM191C, SLC7A4, UBE2L3, VPREB1, THAP7, LZTR1, TOP3B, P2RX6, PPM1F, BMS1P20) 0.436448770695987 64 0.117476837255974 1.06141750406831 1607 0.434410475002909 4 2 2 -6.8269196816918 LTS-005 chr22 22673640 22707493 33854 * BMS1P20 0.235 1 NA 1.12110605961097 39 0.310610365120641 4 4 0 -5.76489254907757 LTS-005 chr22 22707494 22730891 23398 * character(0) 0.284665546727261 11 0.125072270017269 1.36234262914024 53 1.69619101114791 4 3 1 -6.73334772683397 LTS-005 chr22 22730892 22764402 33511 * character(0) 0.492 1 NA 1.1185452960411 37 0.291033547079242 4 4 0 -5.76490333890102 LTS-005 chr22 22764403 23950646 1186244 * c(IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, PRAME, POM121L1P, FBXW4P1, RSPH14, GNAZ, IGLL1, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, MIR650, GGTLC2, RAB36) 0.445941633494957 69 0.0380086307334292 1.05009290858089 1009 0.423266620900125 4 2 2 -7.825026765432 LTS-005 chr22 23950647 23982724 32078 * c(DRICH1, GUSBP11) 0.362 1 NA 0.935967786130582 67 0.330576326775699 3 3 0 -5.76648434546207 LTS-005 chr22 23982725 24208727 226003 * c(C22orf15, RGL4, VPREB3, CHCHD10, MMP11, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3) 0.318388172179072 11 0.198516406466477 1.03127597802373 473 0.320030670270275 4 3 1 -6.75107813971705 LTS-005 chr22 24208728 24236392 27665 * c(MIF-AS1, SLC2A11) 0.464 1 NA 1.03045692706681 93 0.308807079412803 4 4 0 -5.76464128679573 LTS-005 chr22 24236393 24342396 106004 * c(DDTL, DDT, GSTTP1, MIF-AS1, MIF) 0.407204255290793 9 0.15413954716425 1.03558435338901 96 0.638501531050247 4 2 2 -6.74094480604341 LTS-005 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.073 1 NA NA NA NA NA LTS-005 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0543346741260843 55 0.029614606460747 0 NA NA -12.796905631715 LTS-005 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 1.351 1 NA NA NA NA NA LTS-005 chr22 24400149 26228805 1828657 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.409617768355849 49 0.143860225412663 1.02080350051041 1754 0.309865062398563 4 2 2 -6.76848389117467 LTS-005 chr22 26228806 26231410 2605 * MYO18B 0 1 NA 1.02095216122069 7 0.74461063650743 4 4 0 -5.76441602233802 LTS-005 chr22 26231411 26779371 547961 * c(SEZ6L, MYO18B) 0.284459747210118 15 0.216904675134581 1.03513853249168 339 0.780032885239093 4 3 1 -6.73359522392964 LTS-005 chr22 26779372 26829980 50609 * c(SEZ6L, ASPHD2) 0.445 1 NA 1.0087544025149 19 0.368556731491212 4 4 0 -5.7651550257566 LTS-005 chr22 26829981 30953656 4123676 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, HORMAD2, AP1B1, CABP7, RNF215, EWSR1, TTC28, SEC14L2, PITPNB, TFIP11, C22orf31, RHBDD3, SEC14L3, TTC28-AS1, SEC14L4, UQCR10, SDC4P, LIF, SRRD, MN1, MIAT, NEFH, NF2, OSM, MTFP1, CCDC157, ZMAT5, ASPHD2, RFPL1, GATSL3, SEC14L6, XBP1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, NA NA NA NA NA NA NA NA NA LTS-005 NIPSNAP1, KIAA1656, THOC5, MTMR3, HPS4, GAL3ST1) 0.417861928511601 119 0.138429482741455 1.01117551271456 4228 0.328410504048901 4 2 2 -6.82724942091376 LTS-005 NA NA NA NA LTS-005 chr22 30953657 30972647 18991 * c(PES1, GAL3ST1) NA 0 NA 1.752 1 NA NA NA NA NA LTS-005 chr22 30972648 31060029 87382 * c(DUSP18, PES1, SLC35E4, TCN2) 0.448560246363406 12 0.027124153387151 1.13933186522251 311 0.361496153158032 4 2 2 -8.72736484819239 LTS-005 chr22 31060030 31277863 217834 * c(MIR3200, DUSP18, OSBP2, SLC35E4) 0 1 NA 1.11402065208501 67 0.316559431008571 4 4 0 -5.76665886632073 LTS-005 chr22 31277864 31664310 386447 * c(MIR3928, SELENOM, MORC2-AS1, MORC2, OSBP2, INPP5J, LIMK2, PLA2G3, TUG1, SMTN, RNF185) 0.234618562801335 9 0.234598652548939 1.18382007270287 757 0.352194343159513 5 4 1 -6.74881202327597 LTS-005 chr22 31664311 31737180 72870 * c(PIK3IP1, PATZ1, LIMK2) 0.476 1 NA 1.1219863576324 209 0.373734490891106 4 4 0 -5.76515106744596 LTS-005 chr22 31737181 32647861 910681 * c(RFPL2, C22orf42, PATZ1, PISD, AP1B1P1, PRR14L, C22orf24, DRG1, EIF4ENIF1, SLC5A1, SLC5A4, YWHAH, DEPDC5, SFI1) 0.348548070063845 39 0.179970570393682 1.14104474697731 1460 0.510543497519769 4 2 2 -6.77316178721209 LTS-005 chr22 32647862 32754386 106525 * c(RFPL3, SLC5A4) 0.432 1 NA 1.22075347263134 30 0.744784085814647 5 5 0 -5.76484071677065 LTS-005 chr22 32754387 33258032 503646 * c(RFPL3S, RFPL3, BPIFC, FBXO7, LOC339666, RTCB, TIMP3, SYN3) 0.469172364314213 16 0.0296555222513447 1.10643042740591 460 0.295783382228321 4 2 2 -9.41030284487052 LTS-005 chr22 33258033 33402322 144290 * c(TIMP3, SYN3) 0 1 NA 1.16614606687822 43 0.661538398015358 4 4 0 -5.76591600760169 LTS-005 chr22 33402323 35481988 2079666 * c(LARGE-AS1, MIR4764, SYN3, ISX, LARGE1) 0.308272667958235 10 0.226278491146542 1.07586073598782 216 0.424372938224947 4 3 1 -6.73937921416033 LTS-005 chr22 35481989 35483713 1725 * ISX 0.486 1 NA 1.14931449644735 37 0.200968421166875 4 4 0 -5.7645455717614 LTS-005 chr22 35483714 35950094 466381 * c(HMGXB4, TOM1, MIR3909, RASD2, HMOX1, MCM5) 0.453720221598815 9 0.0304060483749167 1.08113317988968 478 0.259659432709581 4 2 2 -8.63960319079434 LTS-005 chr22 35950095 36002786 52692 * character(0) NA 0 NA 0.964 1 NA NA NA NA NA LTS-005 chr22 36002787 37196971 1194185 * c(CACNG2, IFT27, RBFOX2, APOL2, TXN2, MB, MYH9, PVALB, FOXRED2, APOL6, APOL5, APOL4, APOL3, APOL1, EIF3D) 0.457878617600574 55 0.0302841425985497 0.986645965579056 1221 0.265247065266157 4 2 2 -8.89885223204941 LTS-005 chr22 37196972 37257042 60071 * c(NCF4, PVALB) 0 1 NA 1.0656635740676 25 0.509860252095284 4 4 0 -5.76441125876341 LTS-005 chr22 37257043 37693761 436719 * c(LL22NC01-81G9.3, C1QTNF6, CSF2RB, TMPRSS6, CYTH4, TEX33, IL2RB, MPST, NCF4, RAC2, SSTR3, TST, KCTD17) 0.39851594025706 35 0.158485251016983 1.02205698171887 865 0.328422493868338 4 2 2 -6.73973584781146 LTS-005 chr22 37693762 37708058 14297 * CYTH4 0 1 NA 1.01682507864348 51 0.261853227860908 4 4 0 -5.76471986813341 LTS-005 chr22 37708059 37886535 178477 * c(ELFN2, CYTH4, CARD10, MFNG) 0.344805838680305 9 0.238956992876217 1.07026626848439 279 0.481423240860062 4 2 2 -6.75409985151359 LTS-005 chr22 37886536 37962256 75721 * c(CDC42EP1, CARD10) NA 0 NA 1.06145123058838 133 0.234309344650738 4 NA NA -5.76444848985879 LTS-005 chr22 37962257 37962390 134 * CDC42EP1 NA 0 NA 1.224 1 NA NA NA NA NA LTS-005 chr22 37962391 37964203 1813 * CDC42EP1 0.45 1 NA 1.22014141811282 13 0.187187072203184 5 5 0 -5.76452800234462 LTS-005 chr22 37964204 38251686 287483 * c(TRIOBP, CDC42EP1, ANKRD54, GCAT, SH3BP1, GGA1, H1F0, LGALS1, LGALS2, EIF3L, PDXP, MIR658, MIR659, NOL12, GALR3) 0.44612904696878 25 0.0330011615957176 1.1198524608625 877 0.311687695242402 4 2 2 -8.11966224969771 LTS-005 chr22 38251687 38270451 18765 * EIF3L 0 1 NA 1.3041551573987 30 0.950983232867648 5 5 0 -5.76441044021428 LTS-005 chr22 38270452 38509815 239364 * c(MIR4534, SLC16A8, EIF3L, POLR2F, SOX10, BAIAP2L2, PLA2G6, C22orf23, MICALL1, PICK1) 0.169047563855017 11 0.230769503263242 1.16818160543206 644 0.442793447917009 5 4 1 -6.79239881728733 LTS-005 chr22 38509816 38523242 13427 * PLA2G6 0.477 1 NA 1.167578456888 45 0.218558738608691 4 4 0 -5.76573028397454 LTS-005 chr22 38523243 40727323 2204081 * c(LOC100130899, LOC100506472, APOBEC3A_B, DNAL4, TAB1, DDX17, KDELR3, DMC1, FAM83F, APOBEC3D, CSNK1E, ENTHD1, APOBEC3H, APOBEC3A, APOBEC3F, TNRC6B, CBX6, NPTXR, CBX7, MAFF, CBY1, SUN2, TMEM184B, SNORD43, APOBEC3C, KCNJ4, LOC400927, MGAT3, ATF4, PDGFB, MIEF1, TOMM22, APOBEC3G, RPL3, FAM227A, PLA2G6, CACNA1I, SYNGR1, RPS19BP1, GRAP2, GTPBP1, APOBEC3B, JOSD1) 0.386813775185521 103 0.137786072967024 1.12935815818726 3466 0.365059734241115 4 2 2 -6.76337595260344 LTS-005 chr22 40727324 40760445 33122 * c(ADSL, TNRC6B) 0 1 NA 1.23312711252625 152 0.385037912153787 5 5 0 -5.76475941691361 LTS-005 chr22 40760446 40763041 2596 * ADSL NA 0 NA 1.02725712276173 23 0.144353389935154 4 NA NA -5.76452702575343 LTS-005 chr22 40763042 40796666 33625 * SGSM3 NA 0 NA 0.558 1 NA NA NA NA NA LTS-005 chr22 40796667 51137249 10340583 * c(LINC01310, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, PKDREJ, SLC25A17, NUP50, TOB2, CHKB, PACSIN2, PHF21B, KLHDC7B, TNFRSF13C, CPT1B, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, WBP2NL, POLR3H, CYB5R3, TYMP, EP300, FBLN1, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, MAPK8IP2, PLXNB2, NA NA NA NA NA NA NA NA NA LTS-005 BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, CSDC2, RRP7A, MCAT, DESI1, SGSM3, MCHR1, LOC284933, PARVB, NCAPH2, LINC00634, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, SHISA8, ODF3B, NAGA, NDUFA6, SNU13, ACO2, GTSE1, PMM1, A4GALT, MOV10L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, MKL1, RANGAP1, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, CERK, EFCAB6, SREBF2, ST13, TCF20, TEF, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, ALG12, CRELD2, C22orf46, CCDC134, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, LDOC1L, POLDIP3, PHF5A, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, SMDT1, RRP7BP, SERHL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 CELSR1, PPP6R2, ZBED4, RBX1, SCO2) 0.124737532824748 325 0.0632258740477173 0.607025748175752 11544 0.220300037106906 2 2 0 -6.73829413906745 LTS-005 NA NA NA NA LTS-005 chr22 51137250 51206229 68980 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.579111438751306 152 0.158429734538653 2 NA NA -5.76905398834445 LTS-005 chr22 51206230 51220846 14617 * c(RABL2B, RPL23AP82) NA 0 NA 0.42382390678089 61 0.147362498658678 1 NA NA -5.76883689904609 LTS-005 chrX 2699993 2700027 35 * XG 0.167 1 NA 1.775 1 NA NA NA NA NA LTS-005 chrX 2700028 9915112 7215085 * c(LINC01546, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.111806583927454 58 0.0612453339087137 0.621553989097707 1788 0.263525470527756 2 2 0 -6.78815769435075 LTS-005 chrX 9915113 9915165 53 * SHROOM2 0.067 1 NA 2.098 1 NA NA NA NA NA LTS-005 chrX 9915166 11785501 1870336 * c(CLDN34, MSL3, CLCN4, AMELX, HCCS, SHROOM2, ARHGAP6, MID1, WWC3) 0.11619560744518 17 0.0669338457425117 0.68022379758796 937 0.190533650510479 2 2 0 -7.08759773248417 LTS-005 chrX 11785502 11785670 169 * MSL3 NA 0 NA 0.535 1 NA NA NA NA NA LTS-005 chrX 11785671 16887840 5102170 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.117488620794393 46 0.0519458515916771 0.619811804975323 2946 0.193319052386563 2 2 0 -6.77025619822217 LTS-005 chrX 16887841 16888148 308 * RBBP7 NA 0 NA 0.748 1 NA NA NA NA NA LTS-005 chrX 16888149 19378220 2490072 * c(PHKA2-AS1, MIR4768, ADGRG2, SCML2, RAI2, BEND2, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, RBBP7, RS1, SCML1, CDKL5, REPS2) 0.110051576280144 16 0.072841351579992 0.680769952720578 1478 0.209346183620459 2 2 0 -7.14219302796911 LTS-005 chrX 19378221 39935788 20557568 * c(SUPT20HL1, SCARNA9L, MIR23C, PTCHD1-AS, ZFX-AS1, PHEX-AS1, PRDX4, IL1RAPL1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, ZNF645, FAM47A, MAGEB6, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, GK, LINC01281, CFAP47, MAGEB18, SH3KBP1, LANCL3, DCAF8L2, MAGEB5, MAP3K15, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, NA NA NA NA NA NA NA NA NA LTS-005 FTH1P18, FAM47C, OTC, MBTPS2, PDHA1, PDK3, PHEX, FTHL17, POLA1, BCOR, PRRG1, MID1IP1, RPGR, RPS6KA3, SAT1, NA, SMS, SCARNA23, DYNLT3, TSPAN7, LOC729609, XK, ZFX, APOO, CXorf21, KLHL15, TMEM47, SRPX, SYTL5, PCYT1B) 0.106146642529589 100 0.070907744159705 0.642029924975996 6659 0.228943607569052 2 2 0 -7.32175613851183 LTS-005 NA NA NA NA LTS-005 chrX 39935789 39936156 368 * BCOR NA 0 NA 0.256 1 NA NA NA NA NA LTS-005 chrX 39936157 47004923 7068767 * c(LOC100132831, ATP6AP2, FUNDC1, CXorf38, DDX3X, GPR82, GPR34, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, NDUFB11, BCOR, KRBOX4, CHST7, NYX, RP2, DUSP21, ZNF674, LINC01545, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, RBM10, SLC9A7, CASK, RGN, MED14, JADE3) 0.128680760612992 41 0.065199384629746 0.604360224304515 2592 0.172827754945791 2 2 0 -6.74888365333074 LTS-005 chrX 47004924 47006712 1789 * RBM10 NA 0 NA 0.711 1 NA NA NA NA NA LTS-005 chrX 47006713 53436214 6429502 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, ELK1, IQSEC2, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, NA NA NA NA NA NA NA NA NA LTS-005 GPR173, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, SMC1A, UXT, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, MAGED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 PAGE4) 0.123185596176031 89 0.0903978523297001 0.654219144725862 6100 0.245701816390312 2 2 0 -7.02263549694714 LTS-005 NA NA NA NA LTS-005 chrX 53436215 57937127 4500913 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, ZXDA, SMC1A, TSR2, FAM104B, PAGE5) 0.121814688789454 44 0.0709003857073154 0.622460786982033 3058 0.201853592816728 2 2 0 -6.7600802716424 LTS-005 chrX 57937128 57937169 42 * character(0) NA 0 NA 0.667666666666667 3 0.0860251901092542 2 NA NA -5.76443658643827 LTS-005 chrX 61999880 63412586 1412707 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.653002010915244 385 0.257738501534327 2 2 0 -5.82114165281322 LTS-005 chrX 63412587 148854119 85441533 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR374B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00893, ARMCX4, UBE2DNL, CXorf51B, LINC00630, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, FTX, SLC25A5-AS1, MIR764, TRPC5OS, MIR514B, MIR4328, MIR4329, MIR374C, MIR676, LINC00629, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, HS6ST2-AS1, TENM1, CDR1, NA NA NA NA NA NA NA NA NA LTS-005 CDX4, SLC9A6, ENOX2, STAG2, PLAC1, CYSLTR1, UTP14A, PGRMC1, TMSB15A, MID2, CHM, SLC6A14, VSIG4, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, COX7B, SLITRK4, SPANXN3, MAGEC3, DCAF12L1, MAP2K4P1, PIH1D3, MUM1L1, FAM199X, AMER1, APOOL, HDX, ADGRG4, OTUD6A, UPRT, MAGEE2, ACTRT1, GPR119, RBMXL3, DOCK11, TCEAL2, PABPC5, RAB40A, ASB12, CSTF2, CYLC1, AMOT, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, CXorf65, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 AWAT1, AWAT2, ZDHHC15, TCEAL6, H2BFWT, FAM122B, FAM122C, DCX, TIMM8A, FAM46D, ZCCHC12, NA, NA, DIAPH2, DLG3, DRP2, TSC22D3, AGTR2, EDA, EFNB1, ELF4, CT83, SLC25A43, ZCCHC5, NRK, INTS6L, ZNF449, TMEM31, F9, ACSL4, ABCB7, GPC4, FGF13, FHL1, SEPT6, FMR1, AFF2, ATP1B4, KCNE5, LDOC1, KIF4A, CENPI, BRWD3, CT47A11, FAM127B, IL1RAPL2, ITGB1BP2, SNORA69, SNORD61, BEX3, NOX1, GJB1, FAM155B, INGX, GLA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 GPC3, SRPX2, RBMX, PCDH11X, RPS6KA6, P2RY10, HTATSF1, GLUD2, RAB40AL, CXCR3, LPAR4, ATP11C, LINC00632, H2BFM, LOC286437, YIPF6, FIRRE, TTC3P1, FAM133A, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, SNX12, RPA4, HNRNPH2, HPRT1, XIAP, HTR2C, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, ZC3H12B, SATL1, DCAF12L2, ZCCHC16, LHFPL1, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, DGAT2L6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 RAB41, IGBP1, IGSF1, IL2RG, IL13RA1, IL13RA2, AR, ZCCHC13, LOC389895, UBE2NL, LAMP2, FLJ44635, ARL13A, SMIM10L2A, SLC25A53, LINC00890, XKRX, SH2D1A, MIR106A, MIR19B2, ARR3, MIR223, MIR92A2, MAGEA11, MCF2, FOXO4, LINC00891, RPS26P11, GLRA4, FAM127C, CT45A3, CT45A5, SPANXN4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NDUFA1, NONO, SPANXN1, SPANXN2, MIR384, MIR424, OCRL, OPHN1, P2RY4, PAK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 TBX22, ZDHHC9, RLIM, TCEAL9, RAB9B, LUZP4, PDZD11, PBDC1, TFDP3, ARMCX1, MAGEC2, VGLL1, ARMCX3, TAF9B, RBMX2, STK26, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, PLP1, PLS3, ATP7A, CT45A6, CT45A1, NLGN3, SASH3, TAF7L, ARMCX6, WDR44, POU3F4, ATRX, ERCC6L, NUP62CL, GDPD2, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, JPX, MIR448, MIR450A1, SAGE1, ZNF280C, MTMR8, MBNL3, BEX1, HDAC8, ZC4H2, NXT2, NKRF, NXF5, NXF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 NXF3, KLHL4, TEX13B, TEX13A, TEX11, MOSPD1, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, PCDH19, RGAG1, LRCH2, MAGEE1, RAP2C, TMEM35A, EDA2R, RPL39, RPL36A, BCYRN1, RPS4X, SPANXA2-OT1, BCORL1, CXorf56, TNMD, PJA1, CT47B1, BRDTP1, ZCCHC18, SMIM10, SMIM10L2B, SH3BGRL, PABPC1L2B, NAP1L6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 SPANXC, ARMCX5, UPF3B, CT47A7, FAM226B, SLC16A2, SMARCA1, MIR545, MIR542, SOX3, SRD5A1P1, SNORA35, BRS3, TAF1, SERPINA7, SNORD96B, MIR421, BTK, TDGF1P3, TSPAN6, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XIST, XPNPEP2, ZIC3, ZNF711, ZNF75D, MIR766, RNF113A, HMGN5, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, LAS1L, CAPN6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-005 GPR101, USP26, FRMD8P1, MAGT1, TMEM164, PHF6, ZMAT1, CUL4B, TMEM185A, SLITRK2, GPR174, BEX2, IRS4, OGT, MIR503HG, SLC7A3, TCEAL3, FGF16, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, TGIF2LX, CLDN2, TCEAL8, AIFM1, TMEM257, CHRDL1, CXorf40A, ZMYM3, RIPPLY1, TCEAL1, MMGT1, RAB33A, TSIX, ACRC, SYTL4, ITM2A, ARHGEF6, CD40LG, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, MAGEC1, AMMECR1, MED12) 0.110983784671765 461 0.0735065817533887 0.627803362352052 31219 0.411202505121 2 2 0 -6.98387381118408 LTS-005 NA NA NA NA LTS-005 chrX 148854120 148854159 40 * character(0) NA 0 NA 0.533 1 NA NA NA NA NA LTS-005 chrX 148854160 149097285 243126 * c(MAGEA8-AS1, MAGEA8) 0.141 1 NA 1.16827554649129 39 0.47387813963937 4 4 0 -5.76956088909107 LTS-005 chrX 149097286 149097427 142 * character(0) NA 0 NA 0.069 1 NA NA NA NA NA LTS-005 chrX 149097428 154507173 5409746 * c(CSAG4, SMIM9, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, NA NA NA NA NA NA NA NA NA LTS-005 MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA10, MAGEA12, MECP2, MPP1, MTCP1, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, IKBKG, MTMR1, FATE1, FAM50A, FAM58A, GPR50) 0.110298731509264 147 0.0713353135500003 0.642581558225427 6842 0.237363629262499 2 2 0 -6.91072067989705 LTS-005 NA NA NA NA LTS-005 chrX 154507174 154528460 21287 * CLIC2 NA 0 NA 0.574423502769911 29 0.0468948094431501 2 NA NA -5.78609608854558 LTS-005 chrX 154528461 154563642 35182 * CLIC2 NA 0 NA 0.664 1 NA NA NA NA NA LTS-005 chrX 154563643 154580311 16669 * CLIC2 NA 0 NA 0.175054456789384 40 0.268951792458549 0 NA NA -5.76699664659422 LTS-005 chrX 154580312 154774986 194675 * TMLHE NA 0 NA 1.21594591007907 39 4.14169820796783 5 NA NA -5.76443897360274 LTS-005 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.642676283719015 25 0.257797724324065 2 NA NA -5.78047261381279 LTS-005 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.119 1 NA 0.383173309656574 17 0.313280636734767 1 1 0 -5.76514191311441 LTS-005 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 0.962945647256902 3 0.274241377865072 4 NA NA -5.76441888388246 LTS-005 chr1 65893 1026913 961021 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, KLHL17, AGRN, RNF223, C1orf159, HES4, LINC01128, LOC729737, OR4F5, LINC00115, PLEKHN1, PERM1, ISG15) 0.462 1 NA 1.04380652182751 789 0.213485164885116 4 4 0 -5.76590197497191 LTS-006 chr1 1026914 1404005 377092 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, FAM132A, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, SCNN1D, TMEM88B, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, TNFRSF18) 0.441823095156758 25 0.0467858596871605 1.04651329587012 1483 0.23091222524031 4 2 2 -6.76021497277082 LTS-006 chr1 1404006 1418571 14566 * c(ATAD3C, ATAD3B) NA 0 NA 0.751467367565757 61 0.193433662962818 2 NA NA -5.76527041943717 LTS-006 chr1 1418572 1420381 1810 * ATAD3B NA 0 NA 1.229 1 NA NA NA NA NA LTS-006 chr1 1420382 1567616 147235 * c(MIB2, SSU72, TMEM240, ATAD3A, FNDC10, ATAD3B, MMP23B) 0.467341905735693 6 0.0199674735507525 1.00072214227031 435 0.247658278081864 4 2 2 -8.19487345649549 LTS-006 chr1 1567617 1569873 2257 * MMP23B NA 0 NA 1.817 1 NA NA NA NA NA LTS-006 chr1 1569874 1603048 33175 * c(SLC35E2B, MMP23B, CDK11B) 0.38357572967549 9 0.0786142127381839 1.24347487593261 232 0.518075835001796 6 4 2 -6.73678008841962 LTS-006 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.628 1 NA NA NA NA NA LTS-006 chr1 1606859 1636501 29643 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.5 1 NA 0.658535041800444 80 0.370399611222354 2 2 0 -5.7650693563395 LTS-006 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.018 1 NA NA NA NA NA LTS-006 chr1 1637054 1645523 8470 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.322906283114599 39 0.289683111335908 0 NA NA -5.7661143207446 LTS-006 chr1 1645524 1645592 69 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.599 1 NA NA NA NA NA LTS-006 chr1 1645593 1671167 25575 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.400940577372049 12 0.0496075507449127 0.7147044894569 156 0.320517692993568 3 2 1 -6.73883220112102 LTS-006 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 1.432 1 NA NA NA NA NA LTS-006 chr1 1682940 7804939 6122000 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-006 MIR551A, TP73, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21) 0.447467360574192 114 0.0874402939108951 1.0563415821853 5342 0.447724887121374 4 2 2 -6.76129196265577 LTS-006 NA NA NA NA LTS-006 chr1 7804940 16362661 8557722 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, CORT, C1orf127, C1orf64, SLC2A7, DFFA, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, TNFRSF9, DRAXIN, CENPS, TMEM82, NA NA NA NA NA NA NA NA NA LTS-006 PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBLIM1, CASZ1, TMEM51, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, AGMAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.441858156974637 270 0.0792850161265271 1.01062897116147 9403 0.281736362761484 4 2 2 -6.77191261588592 LTS-006 NA NA NA NA LTS-006 chr1 16362662 16383448 20787 * CLCNKB 0.255 1 NA 1.85834308731273 107 32.2027495320221 9 9 0 -5.76441013520066 LTS-006 chr1 16383449 16786481 403033 * c(CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.318532838554835 10 0.0803578109319671 1.02547915038549 724 0.249408521656547 4 3 1 -6.78359680749572 LTS-006 chr1 16786482 17293143 506662 * c(MST1P2, MST1L, CROCCP3, ESPNP, NBPF1, NECAP2, CROCCP2, CROCC) 0.325611760261892 74 0.0846304038588503 0.920535674062167 586 0.38020742192235 4 3 1 -6.78281381286897 LTS-006 chr1 17293144 17294796 1653 * CROCC NA 0 NA 1.623 1 NA NA NA NA NA LTS-006 chr1 17294797 17331826 37030 * c(ATP13A2, MFAP2, CROCC) 0.385670269368792 9 0.203204330662513 1.06143351366516 212 0.24101447637742 3 2 1 -6.75134731354037 LTS-006 chr1 17331827 17393889 62063 * c(PADI2, ATP13A2, SDHB) 0.466 1 NA 1.17733779034694 82 1.52456282497212 5 5 0 -5.76441376350626 LTS-006 chr1 17393890 24796838 7402949 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, CELA3A, HNRNPR, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LOC284632, LINC00339, PADI1, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, NA NA NA NA NA NA NA NA NA LTS-006 ID3, PADI6, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, ALDH4A1, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.437383965768795 306 0.0779003647448887 1.04158489993667 9285 0.276976240076731 4 2 2 -6.7403201494338 LTS-006 NA NA NA NA LTS-006 chr1 24796839 24796899 61 * NIPAL3 NA 0 NA 0.851 1 NA NA NA NA NA LTS-006 chr1 24796900 26529121 1732222 * c(MIR3917, RCAN3AS, SRRM1, CNKSR1, RCAN3, PDIK1L, PAQR7, EXTL1, TMEM50A, CLIC4, SYF2, LDLRAP1, CATSPER4, STMN1, NCMAP, PAFAH2, ZNF593, TMEM57, MTFR1L, RSRP1, MAN1C1, NIPAL3, SELENON, RHCE, RHD, LOC646471, SLC30A2, AUNIP, FAM110D, TRIM63, RUNX3) 0.462817470637326 22 0.0262509121672065 0.999522730343728 2123 0.237648970456664 4 2 2 -7.48339000694066 LTS-006 chr1 26529122 26671625 142504 * c(CD52, AIM1L, CEP85, SH3BGRL3, UBXN11) 0.222 1 NA 1.00360869337842 381 0.232481834555432 4 4 0 -5.76568686250959 LTS-006 chr1 26671626 26756209 84584 * c(ZNF683, AIM1L, LIN28A) 0.353046281473963 9 0.188562323914402 0.989976688387811 177 0.307181507615539 4 3 1 -6.73607158283526 LTS-006 chr1 26756210 26786627 30418 * c(LIN28A, DHDDS) 0.49 1 NA 1.06924440643959 51 0.23753902135579 4 4 0 -5.76480493212943 LTS-006 chr1 26786628 43875958 17089331 * c(FAM229A, MATN1-AS1, LOC100129924, NFYC-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, ZMPSTE24, PPIE, PPIH, CAP1, KHDRBS1, GMEB1, NUDC, SF3A3, EBNA1BP2, RCC1, MED8, SMIM12, AZIN2, TMEM54, ERMAP, CSMD2, RAB42, FAM46B, KDF1, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, TMEM125, COL8A2, COL9A2, COL16A1, CSF3R, NA NA NA NA NA NA NA NA NA LTS-006 DCDC2B, ZNF362, LINC01225, MANEAL, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, PHC2, AGO3, AGO4, FAM76A, TXLNA, SLFNL1, EPB41, AK2, EYA3, FABP3, FGR, FHL3, DNAJC8, FOXJ3, SCMH1, WDTC1, NCDN, SZT2, MACF1, KPNA6, STX12, FNDC5, IFI6, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HCRTR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, SVBP, TRNP1, CD164L2, LCK, TMEM200B, CSMD2-AS1, MIR30C1, MIR30E, MATN1, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, OPRD1, ZNF691, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, TRIT1, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TRIM62, PEF1, PPT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PIGV, MAP7D1, IQCC, TMEM234, PSMB2, PTAFR, ADGRB2, KIAA1522, DLGAP3, HIVEP3, RBBP4, RLF, RPA2, RPS6KA1, GPATCH3, CLSPN, OXCT2, RRAGC, TINAGL1, P3H1, SFPQ, SRSF4, KIAA0754, ACTG1P20, SMAP2, S100PBP, MEAF6, EXO5, ELOVL1, MRPS15, MARCKSL1, SLC2A1, ZFP69B, ZBTB8A, LOC653160, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, TIE1, ZBTB8B, LINC01137, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PPIEL, CCDC30, ZSCAN20, DNALI1, LAPTM5, C1orf50, CCDC28B, NKAIN1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SESN2, STK40, TMEM222, SNHG3, ZMYND12, ZDHHC18, NR0B2, NT5C1A, FAM167B, MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, KCNQ4, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, RIMS3, CDC20, THRAP3 NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ) 0.436342764026646 236 0.0848570741046616 1.00756033738486 19293 0.239192842120409 4 2 2 -6.84015071277906 LTS-006 NA NA NA NA LTS-006 chr1 43875959 43880723 4765 * SZT2 NA 0 NA 1.181 1 NA NA NA NA NA LTS-006 chr1 43880724 44490068 609345 * c(KDM4A-AS1, CCDC24, DPH2, SZT2, ATP6V0B, PTPRF, ST3GAL3, SLC6A9, HYI, B4GALT2, ARTN, IPO13, KDM4A) 0.453575007706729 18 0.037221866157696 1.12119536842651 1394 0.231239933946659 4 2 2 -6.97445384175954 LTS-006 chr1 44490069 44584464 94396 * c(KLF17, SLC6A9) NA 0 NA 0.819 1 NA NA NA NA NA LTS-006 chr1 44584465 52376769 7792305 * c(EFCAB14-AS1, MIR761, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, TOE1, OSBPL9, PLK3, CCDC163, DMBX1, KLF17, KNCN, MOB3C, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, ELAVL4, CYP4Z1, SLC5A9, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, MMACHC, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, C1orf228, TCTEX1D4, IPP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, NA NA NA NA NA NA NA NA NA LTS-006 MUTYH, NASP, NRDC, PRDX1, TMEM69, CMPK1, LURAP1, SPATA6, RNF220, POMGNT1, DMAP1, ZSWIM5, RAB3B, GPBP1L1, RPS8, DMRTA2, ATPAF1, STIL, TAL1, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, TMEM53, HECTD3, BEND5, RAD54L, FOXD2-AS1, HPDL, AGBL4, PIK3R3, MKNK1, PTCH2, EIF2B3, SNORD46, SNORD38A, SNORD38B, EFCAB14) 0.457145315419873 125 0.0409626391538877 1.02191046336572 6320 0.247529916699606 4 2 2 -6.95941990891798 LTS-006 NA NA NA NA LTS-006 chr1 52376770 52378314 1545 * RAB3B 0 1 NA 1.10368929907415 27 0.473491721423311 4 4 0 -5.76442848745744 LTS-006 chr1 52378315 53290993 912679 * c(KTI12, CC2D1B, ZCCHC11, GPX7, FAM159A, ORC1, TXNDC12, RAB3B, COA7, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.2990375281163 10 0.238598803200873 1.01528038011285 1332 0.302665932022756 4 3 1 -6.75404242070921 LTS-006 chr1 53290994 53291550 557 * ZYG11B 0.493 1 NA 0.93973854697659 11 0.157602722634535 3 3 0 -5.76449029210516 LTS-006 chr1 53291551 55103945 1812395 * c(LOC100507564, MIR4781, LRRC42, TCEANC2, PODN, CPT2, GLIS1, SLC25A3P1, DIO1, CDCP2, SSBP3, ACOT11, FAM151A, LDLRAD1, MAGOH, ZYG11A, MRPL37, HSPB11, YIPF1, C1orf123, ECHDC2, NDC1, CYB5RL, SCP2, DMRTB1, SLC1A7, LRP8, ZYG11B, TMEM59) 0.448797932657286 44 0.0812812958104495 1.00980573515951 2002 0.236930955661107 4 2 2 -6.76817437335275 LTS-006 chr1 55103946 55104317 372 * character(0) 0.315 1 NA 1.08597661026557 3 0.229994202825492 4 4 0 -5.76442085194676 LTS-006 chr1 55104318 55266797 162480 * c(MROH7-TTC4, PARS2, MROH7, TTC22, TTC4) 0.270251120717706 9 0.23338725567415 1.0355663423822 431 0.275065407858448 5 4 1 -6.76658306977085 LTS-006 chr1 55266798 55266845 48 * TTC22 0.5 1 NA 0.707851473651806 3 0.223029893362601 2 2 0 -5.76441013511228 LTS-006 chr1 55266846 59041655 3774810 * c(LOC100507634, MIR4422, OMA1, DAB1, LEXM, DHCR24, C1orf168, TMEM61, USP24, PCSK9, TACSTD2, TTC22, PRKAA2, C8A, C8B, BSND, PLPP3) 0.460234185702428 40 0.0336024171139136 1.03668348288167 1506 0.252545629061495 4 2 2 -7.13026038191109 LTS-006 chr1 59041656 59096045 54390 * TACSTD2 0.207 1 NA 0.917445610526129 35 0.335515226520185 3 3 0 -5.76523192143553 LTS-006 chr1 59096046 59096250 205 * character(0) 0.30233966103654 9 0.0335277662708256 1.36426118928372 13 0.672914327613622 18 13 5 -6.7337758756848 LTS-006 chr1 59096251 59121036 24786 * MYSM1 0.408 1 NA 0.92721218960461 15 0.165055257702498 3 3 0 -5.76663367905453 LTS-006 chr1 59121037 67199586 8078550 * c(LINC01135, MIR3117, MIR3671, MIR4794, MIR4711, PATJ, MYSM1, C1orf87, UBE2U, CYP2J2, KANK4, LINC00466, AK4, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, JUN, LEPR, MIR101-1, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, L1TD1, LEPROT, RAVER2, FGGY, CACHD1, HSD52, USP1, DLEU2L, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.451901431725622 99 0.0666376544787865 1.01292195633292 3940 0.271797411519045 4 2 2 -6.8101843718418 LTS-006 chr1 67199587 67204958 5372 * SGIP1 NA 0 NA 1.559 1 NA NA NA NA NA LTS-006 chr1 67204959 67210718 5760 * SGIP1 NA 0 NA 1.45964866863722 57 0.343321711546252 7 NA NA -5.76445905233288 LTS-006 chr1 67210719 67220291 9573 * c(TCTEX1D1, SGIP1) NA 0 NA 0.935 1 NA NA NA NA NA LTS-006 chr1 67220292 67266756 46465 * c(INSL5, TCTEX1D1) 0.454 1 NA 0.952675331286517 63 0.26644801327614 4 4 0 -5.76695342760731 LTS-006 chr1 67266757 67279250 12494 * c(INSL5, WDR78) 0 1 NA 1.16945131978147 25 0.525224317157282 5 5 0 -5.76442301404277 LTS-006 chr1 67279251 67559746 280496 * c(SLC35D1, C1orf141, MIER1, WDR78) 0.291810193526624 10 0.209358278768452 0.995888666467626 524 0.353841740414822 4 3 1 -6.76895802712918 LTS-006 chr1 67559747 67559929 183 * C1orf141 0.494 1 NA 0.950637621116164 5 0.258074989102005 4 4 0 -5.76442133085408 LTS-006 chr1 67559930 74492267 6932338 * c(ZRANB2-AS1, GNG12-AS1, MIR1262, NEGR1-IT1, ZRANB2-AS2, HHLA3, LRRIQ3, CTH, IL23R, GADD45A, NEGR1, SERBP1, IL12RB2, C1orf141, MIR186, PIN1P1, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, RPE65, WLS, ANKRD13C, DIRAS3, SRSF11, ZRANB2) 0.442521515232123 50 0.0959788688478153 0.986670965070935 2022 0.277757751895501 4 2 2 -6.84952252185535 LTS-006 chr1 74492268 77166333 2674066 * c(FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.45364842401031 66 0.0663661595458644 1.07658682775463 1593 0.29365295990042 4 2 2 -6.82859978590346 LTS-006 chr1 77166334 77333021 166688 * character(0) NA 0 NA 0.647 1 NA NA NA NA NA LTS-006 chr1 77333022 89435102 12102081 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, AK5, GNG5, GTF2B, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, NA NA NA NA NA NA NA NA NA LTS-006 CLCA2, HS2ST1) 0.450278250794836 91 0.0695477875255191 1.00388228098321 4847 0.66505016867185 4 2 2 -6.78723104263652 LTS-006 NA NA NA NA LTS-006 chr1 89435103 94041762 4606660 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.457032557193677 48 0.0457273322908708 0.943084295581893 3313 0.242708158480937 4 2 2 -7.27032444397457 LTS-006 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.423 1 NA NA NA NA NA LTS-006 chr1 94047868 116676668 22628801 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, MAB21L3, SLC44A3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, NA NA NA NA NA NA NA NA NA LTS-006 FNDC7, SASS6, UBL4B, AGL, DPYD, S1PR1, CELSR2, ALG14, HIPK1, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, DNTTIP2, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, NGF, NHLH2, NRAS, OVGP1, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, PALMD, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, PTBP2, ABCD3, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, BCAR3, PROK1, CASQ2, PSRC1, STRIP1, CDC14A, RTCA, SLC16A4, ARHGAP29, DNAJA1P5, CD53, LRIG2, PLPPR4) 0.450379631169882 207 0.0839016691145213 0.9999504087608 13529 0.274685976332496 4 2 2 -6.94124959081268 LTS-006 NA NA NA NA LTS-006 chr1 116676669 117142613 465945 * c(MAB21L3, IGSF3, ATP1A1, ATP1A1-AS1, CD58) 0.248 1 NA 1.00535716984719 351 0.176732536894228 4 4 0 -5.77077032340472 LTS-006 chr1 117142614 117156490 13877 * IGSF3 0.271901275457368 10 0.038459358057854 0.989092173447447 42 0.227909155241674 2 2 0 -6.75244439286292 LTS-006 chr1 117156491 117529458 372968 * c(MIR320B1, IGSF3, PTGFRN, CD2) 0.437 1 NA 1.02860426012444 163 1.33298434242062 4 4 0 -5.76441196387082 LTS-006 chr1 117529459 120345229 2815771 * c(MIR942, WARS2, WDR3, MAN1A2, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, HAO2, GDAP2, FAM46C, PTGFRN, LINC00622, TBX15, VTCN1, TRIM45, REG4, TTF2, ZNF697, CD101) 0.431952749629484 56 0.115723022156971 0.996922902980178 2006 0.29900263901703 4 2 2 -6.75621583528787 LTS-006 chr1 120345230 120378678 33449 * c(NBPF7, REG4) 0.445 1 NA 1.0093203119576 23 0.178285732383558 4 4 0 -5.76473651223318 LTS-006 chr1 120378679 120512455 133777 * c(ADAM30, NBPF7, NOTCH2) NA 0 NA 0.96860908825835 369 0.215993755064667 4 NA NA -5.77142872453883 LTS-006 chr1 120512456 120529503 17048 * NOTCH2 NA 0 NA 0.847 1 NA NA NA NA NA LTS-006 chr1 120529504 120927081 397578 * c(FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.301280350291562 9 0.0619504730499381 0.818020570268762 169 0.86198779822322 5 4 1 -6.78350374752215 LTS-006 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.967694272487828 77 0.232984478579704 4 NA NA -5.78232318707799 LTS-006 chr1 143912360 144851537 939178 * c(NBPF20, LOC653513, FAM72D, NA, PFN1P2, PDE4DIP) 0.47 1 NA 0.718991266995249 41 0.294889462548174 2 2 0 -5.76617734529322 LTS-006 chr1 144851538 145139174 287637 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.375939001445821 66 0.0876367210237516 0.982698264712197 580 0.335160519655048 3 2 1 -6.80264990153078 LTS-006 chr1 145139175 145139359 185 * NBPF20 NA 0 NA 0.76 1 NA NA NA NA NA LTS-006 chr1 145139360 145283523 144164 * c(NBPF10, NBPF20, NOTCH2NL) 0.330163129592752 5 0.040574622610691 0.749335390695384 85 0.432177523437656 4 3 1 -6.83018597249138 LTS-006 chr1 145283524 145283557 34 * c(NBPF10, NBPF20, NOTCH2NL) 0.446 1 NA 1.597 1 NA NA NA NA NA LTS-006 chr1 145283558 146509905 1226348 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, RBM8A) 0.384439421544392 12 0.0834238447854562 1.0050793176019 1346 0.445934901462416 3 2 1 -6.83151144207445 LTS-006 chr1 146509906 146510112 207 * c(NA, NA, NA, LOC728989) 0.46 1 NA 1.56020238534124 5 0.149698029379147 7 7 0 -5.76441379754298 LTS-006 chr1 146510113 147083805 573693 * c(LINC00624, PDIA3P1, FMO5, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.449416407624395 29 0.0503657558228397 1.00158118319248 411 0.239301732120571 4 2 2 -6.8096201663673 LTS-006 chr1 147083806 147142294 58489 * c(ACP6, BCL9, NA, NA, NA) 0.412672761928818 5 0.0340778520449866 1.38691108750082 175 0.312645019224642 5 3 2 -6.75696360698847 LTS-006 chr1 147142295 161518487 14376193 * c(MIR190B, C1orf68, MSTO2P, TSTD1, CADM3-AS1, LOC100132111, FCGR1CP, C2CD4D, MIR4257, MIR4258, LINC01133, LOC100505666, PMF1-BGLAP, TNFAIP8L2-SCNM1, SCAMP3, MIR5087, MIR5187, FALEC, SF3B4, ADAR, HAX1, C1orf61, SEMA6C, PMVK, FAM189B, NES, JTB, MTMR11, MLLT11, SLC27A3, TDRKH, CELF3, PMF1, GLMP, VPS45, CHRNB2, PGLYRP3, SLAMF6, FCRL1, FCRL3, CKS1B, THEM4, CLK2, GABPB2, TCHHL1, RPTN, TDRD10, SHE, KLHDC9, NA NA NA NA NA NA NA NA NA LTS-006 OR10J5, DCST2, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, S100A16, ITLN2, CREB3L4, CIART, LELP1, DCST1, BNIPL, LRRC71, PYHIN1, CTSK, CTSS, SPRR4, TTC24, ECM1, EFNA1, EFNA3, EFNA4, LCE4A, KRTCAP2, CRTC2, ENSA, ETV3, FCER1A, FCER1G, FCGR1A, FCGR2A, FCGR3A, FDPS, KIAA0907, FLG, POGZ, SYT11, RPRD2, SMG5, NCSTN, SNAPIN, RUSC1, CA14, ACKR1, LCE5A, ARHGAP30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 CFAP126, CFAP45, NBPF14, C1orf43, CHTOP, LCE2B, GBA, GBAP1, OR10J1, USP21, GJA5, GJA8, SLC39A1, RIIAD1, THEM5, NBPF15, RUSC1-AS1, C1orf204, LAMTOR2, TMOD4, CERS2, HDGF, HIST2H2AB, APCS, HSPA6, APOA2, HIST2H2BC, S100A7A, LINGO4, RXFP4, IFI16, OR10R2, FCRL6, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNJ9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 KCNJ10, KCNN3, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, C1orf189, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, LOR, ARNT, LY9, MIR9-1, MCL1, SMCP, MEF2D, MNDA, MPZ, HIST2H2BF, ETV3L, OR10J3, KPRP, LCE6A, MTX1, MUC1, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, NPR1, NTRK1, CRNN, DCAF8, F11R, BOLA1, ZBTB7B, RRNAD1, APH1A, PLEKHO1, ACP6, GPR89B, UFC1, OAZ3, CD244, PFDN2, PI4KB, PKLR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 DPM3, MRPS21, ADAMTSL4, CRCT1, GON4L, GPATCH4, DUSP23, C1orf56, PPOX, MSTO1, GOLPH3L, KIRREL, YY1AP1, PRCC, UBE2Q1, ITLN1, FAM63A, ASH1L, LENEP, SLC50A1, SLAMF8, CDC42SE1, UBQLN4, PSMB4, OTUD7B, PSMD4, RAB25, PGLYRP4, RHBG, ATP8B2, VANGL2, LINC00869, PBXIP1, S100A14, PRR9, GATAD2B, CGN, IGSF9, ZNF687, HCN3, SLAMF7, CADM3, PEX19, PRUNE1, RAB13, RFX5, RIT1, HAPLN2, RORC, RPS27, S100A1, S100A2, S100A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A12, S100A13, BGLAP, BCAN, SDHC, SEMA4A, PPIAL4D, LOC645166, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, MRPL9, SLAMF1, INTS3, HIST2H3D, PCP4L1, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPTA1, SSR2, SCARNA4, SNORA80E, MIR554, MIR555, MIR92B, VPS72, THBS3, TCHH, TPM3, CCT3, TUFT1, NA, NA, NA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 NA, PPIAL4F, PPIAL4E, USF1, MIR765, DAP3, SCNM1, FCRL2, MRPL24, TNFAIP8L2, C1orf54, PAQR6, TRIM46, TARS2, FLAD1, OR6N2, OR6K2, NECTIN4, SNX27, ANP32E, ISG20L2, HIST2H2AC, FCRL5, FCRL4, HIST2H2BE, PIP5K1A, TAGLN2, HORMAD1, TOMM40L, ANXA9, TMEM79, CASQ1, LCE3D, PEA15, B4GALT3, ADAM15, CD84, AQP10, SLAMF9, SELENBP1, SH2D2A, PYGO2, CD1A, CD1B, CD1C, NUP210L, CD1D, PRPF3, CD1E, ARHGEF2, DEDD, CD5L, MEX3A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PIGM, IGSF8, AIM2, ADAMTS4, CD48, SLC25A44, ARHGEF11, SETDB1, UBAP2L, SV2A, DENND4B, NR1I3) 0.44817424634541 401 0.0724295695392489 1.02780412082678 23652 0.29739364139557 4 2 2 -6.76491295442479 LTS-006 NA NA NA NA LTS-006 chr1 161518488 161518754 267 * FCGR3A NA 0 NA 0.629 1 NA NA NA NA NA LTS-006 chr1 161518755 161570508 51754 * c(FCGR3A, FCGR2C) 0.375742815831021 3 0.112855364663508 0.644229248937801 75 0.477570053537736 1 1 0 -6.76820718898061 LTS-006 chr1 161570509 166816941 5246433 * c(MIR921, MIR3658, LOC100505795, MIR4654, DUSP12, FMO9P, SH2D1B, UHMK1, FCRLB, FAM78B, FCGR2B, FCGR3B, ALDH9A1, ATF6, OLFML2B, C1orf111, HSPA7, CCDC190, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POGK, RGS4, RXRG, RPL31P11, UAP1, MIR556, UCK2, NUF2, FCRLA, RGS5, FCGR2C, NOS1AP) 0.436774188999976 42 0.0825914619890939 1.02774568847072 2457 0.29714243672244 4 2 2 -6.73581662607429 LTS-006 chr1 166816942 166818132 1191 * POGK NA 0 NA 0.731 1 NA NA NA NA NA LTS-006 chr1 166818133 167096931 278799 * c(GPA33, TADA1, ILDR2, POGK, MAEL, DUSP27) 0.434 1 NA 0.806194008426125 447 0.149110283705365 3 3 0 -5.80758003876041 LTS-006 chr1 167096932 167097567 636 * DUSP27 0.323 1 NA 0.778538404089423 15 0.282969676988963 2 2 0 -5.76445406439784 LTS-006 chr1 167097568 168344933 1247366 * c(GPR161, MPC2, TIPRL, SFT2D2, POU2F1, ADCY10, DCAF6, MIR557, ANKRD36BP1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1) 0.366247375191531 33 0.107590060935577 0.797546449138185 1345 0.24688302328925 3 2 1 -6.88445161408872 LTS-006 chr1 168344934 168509911 164978 * LOC100505918 NA 0 NA 2.724 1 NA NA NA NA NA LTS-006 chr1 168509912 176660353 8150442 * c(MIR1295A, MIR3119-1, MIR3120, MIR3119-2, LOC100506023, GAS5-AS1, DNM3OS, MIR1295B, SLC19A2, RC3H1, METTL11B, DPT, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, LINC01142, NME7, ANKRD45, FASLG, FMO6P, SERPINC1, MYOC, ATP1B1, SUCO, METTL13, PIGC, PRRX1, DARS2, C1orf112, SCYL3, CCDC181, GAS5, PAPPA2, SNORD74, XCL1, TNN, MRPS14, NA NA NA NA NA NA NA NA NA LTS-006 SELE, SELL, SELP, RFWD2, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TOP1P1, TNFSF4, LOC730159, LINC00626, MROH9, ZBTB37, BLZF1, VAMP4, TNFSF18, CENPL, METTL18, GORAB, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.375773797768368 107 0.0720271212071161 1.28797533673837 5251 0.797413996372612 6 4 2 -6.75491958650469 LTS-006 NA NA NA NA LTS-006 chr1 176660354 176661219 866 * PAPPA2 NA 0 NA 1.474 1 NA NA NA NA NA LTS-006 chr1 176661220 178888009 2226790 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.363135622972608 34 0.0758540029811937 1.42698038878854 1261 0.59641466811885 6 4 2 -6.76478411489066 LTS-006 chr1 178888010 183907158 5019149 * c(GM140, MIR3121, LHX4-AS1, ARPC5, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, IER5, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, TOR3A, SOAT1, CACNA1E, NPHS2, NPL, SHCBP1L, ACBD6, RGS8, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.368152220372204 84 0.0731430196229549 1.33153533883308 5270 0.351623371951971 6 4 2 -6.75288218738174 LTS-006 chr1 183907159 196716667 12809509 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, COLGALT2, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2) 0.384855624197996 46 0.0428210578473849 1.25548939328805 3497 0.299135883964172 6 4 2 -7.23506431927972 LTS-006 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.484 1 NA NA NA NA NA LTS-006 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.472275199328769 111 0.106894577870212 1 NA NA -5.82501121108171 LTS-006 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.281 1 NA NA NA NA NA LTS-006 chr1 196857130 200828065 3970936 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5, DDX59, KIF14) 0.378322828309467 51 0.0710451554833055 1.24941666761399 2327 0.383824600361149 6 4 2 -6.84303485114873 LTS-006 chr1 200828066 200828162 97 * CAMSAP2 NA 0 NA 1.524 1 NA NA NA NA NA LTS-006 chr1 200828163 204527240 3699078 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, KIF21B, CAMSAP2, FMOD, PHLDA3, TMEM9, LMOD1, OPTC, LINC00303, GPR25, UBE2T, RPS10P7, KISS1, LAD1, NA, MDM4, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PIK3C2B, PKP1, LAX1, ETNK2, PRELP, IPO9, C1orf106, PTPN7, RABIF, KLHL12, LGR6, REN, RNPEP, NA NA NA NA NA NA NA NA NA LTS-006 MGAT4EP, ASCL5, SNRPE, SNORA77, TNNI1, TNNT2, LINC01136, CACNA1S, BTG2, LINC00260, PPP1R15B, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A) 0.371336460334179 108 0.0961187321032088 1.37948921218048 6226 0.373064222067394 6 4 2 -6.73977122069779 LTS-006 NA NA NA NA LTS-006 chr1 204527241 204527685 445 * MDM4 NA 0 NA 1.024 1 NA NA NA NA NA LTS-006 chr1 204527686 204991228 463543 * c(LRRN2, NFASC, MDM4) 0.348662633034522 8 0.208735949056629 1.09218251496439 438 0.380390263056572 4 3 1 -6.73971327510113 LTS-006 chr1 204991229 205043250 52022 * c(NFASC, CNTN2) 0.457 1 NA 1.07383704918085 141 0.229725208076818 4 4 0 -5.76531996254297 LTS-006 chr1 205043251 211654830 6611580 * c(MIR4260, IL24, SLC26A9, CR1, CR1L, CR2, C1orf74, LOC148696, MFSD4A, PM20D1, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, SYT14, DSTYK, DIEXF, LEMD1-AS1, LOC284578, LOC284581, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, TMEM81, LAMB3, MIR205, MIR29C, CD46, C1orf186, MIR135B, G0S2, IL20, CDK18, PFKFB2, PIGR, PLXNA2, KLHDC8A, AVPR1B, YOD1, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, RBBP5, MIR205HG, NUCKS1, NA NA NA NA NA NA NA NA NA LTS-006 SRGAP2C, CNTN2, TRAF5, C4BPA, C4BPB, FAM72A, C1orf116, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00467, SLC45A3, RAB29, FCMR, MAPKAPK2, LEMD1, CD34, IKBKE, TMCC2) 0.438418941849157 148 0.0925976157408487 1.02997291931112 6012 0.252604517522548 4 2 2 -6.73630846069186 LTS-006 NA NA NA NA LTS-006 chr1 211654831 211744924 90094 * RD3 NA 0 NA 1.641 1 NA NA NA NA NA LTS-006 chr1 211744925 211752124 7200 * SLC30A1 NA 0 NA 1.30759310281163 115 0.264273899243778 6 NA NA -5.76449810274107 LTS-006 chr1 211752125 211831909 79785 * NEK2 NA 0 NA 0.578 1 NA NA NA NA NA LTS-006 chr1 211831910 214507653 2675744 * c(MIR3122, LINC00538, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, FLVCR1-AS1, SNORA16B, VASH2, ANGEL2, LPGAT1) 0.447951028971594 29 0.0447927630942294 0.970997392603602 1610 0.224253011157001 4 2 2 -6.92648703112809 LTS-006 chr1 214507654 214509953 2300 * SMYD2 NA 0 NA 1.262 1 NA NA NA NA NA LTS-006 chr1 214509954 218617994 4108041 * c(LINC00210, CENPF, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, SMYD2, PTPN14, TGFB2, TGFB2-AS1, USH2A) 0.414977313131759 22 0.135061057220389 1.05640162079699 1842 0.272383734384787 4 2 2 -6.75983105884865 LTS-006 chr1 218617995 218683322 65328 * character(0) NA 0 NA 0.75 1 NA NA NA NA NA LTS-006 chr1 218683323 225565165 6881843 * c(MIR320B2, MIR4742, BPNT1, DUSP10, LYPLAL1, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.444833932617045 70 0.0830030506561022 0.982296890471546 3809 0.261275235235234 4 2 2 -6.89418808911055 LTS-006 chr1 225565166 225567830 2665 * DNAH14 NA 0 NA 1.391 1 NA NA NA NA NA LTS-006 chr1 225567831 226187018 619188 * c(LEFTY1, DNAH14, SDE2, EPHX1, PYCR2, LBR, ENAH, SRP9, LEFTY2, TMEM63A) 0.367635250183887 23 0.0534599329112698 1.29855684363961 793 0.331011859728285 6 4 2 -6.7616260968413 LTS-006 chr1 226187019 233802630 7615612 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR3620, MIR4666A, MIR4427, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, C1orf131, MRPL55, HIST3H2BB, PARP1, EXOC8, LOC149373, RNF187, SDE2, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, LIN9, GUK1, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, FAM89A, KCNK1, ZNF847P, TRIM67, H3F3AP4, TRIM17, EGLN1, MAP10, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, NA NA NA NA NA NA NA NA NA LTS-006 ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, JMJD4, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, WNT3A, HIST3H2A, URB2) 0.455410142890397 164 0.0475400502143483 1.01160354948273 6863 0.236537232106968 4 2 2 -6.90934154160838 LTS-006 NA NA NA NA LTS-006 chr1 233802631 236750785 2948155 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, GGPS1, TOMM20) 0.460718818509399 31 0.0374626121863913 0.942014078501979 2123 0.216673188167507 4 2 2 -7.36825126394506 LTS-006 chr1 236750786 247287064 10536279 * c(AKT3, LOC100130331, MIR3123, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, LINC01139, C1orf229, MAP1LC3C, MTR, DESI2, SCCPDH, KIF26B, HEATR1, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, EFCAB2, KMO, ACTN2, EXO1, ZNF670, CEP170 NA NA NA NA NA NA NA NA NA LTS-006 ) 0.455709187068212 78 0.0457215817417009 1.00618472587361 4818 0.2651066554313 4 2 2 -6.94988770578804 LTS-006 NA NA NA NA LTS-006 chr1 247287065 247287153 89 * ZNF124 NA 0 NA 0.961 1 NA NA NA NA NA LTS-006 chr1 247287154 248604614 1317461 * c(MIR3916, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2W5, OR13G1, ZNF124, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496) 0.437518722364909 60 0.0841541496538038 1.10009258273751 1219 0.512058500789237 4 2 2 -6.74770975512323 LTS-006 chr1 248604615 248604943 329 * character(0) 0.302 1 NA 1.23662882408162 11 0.267800706089096 5 5 0 -5.76441332235342 LTS-006 chr1 248604944 248737671 132728 * c(OR2T34, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5) 0.329891971300946 21 0.0864028218234082 1.18594806656499 137 0.779000580185102 4 3 1 -6.74714672303947 LTS-006 chr1 248737672 248790545 52874 * c(OR2T34, OR2T10, OR2T11) 0.339 1 NA 0.522156331505138 60 0.239040374340762 1 1 0 -5.76538937518233 LTS-006 chr1 248790546 248801482 10937 * character(0) NA 0 NA 4.668 1 NA NA NA NA NA LTS-006 chr1 248801483 248814052 12570 * c(OR2T27, OR2T35) 0.374319904600071 4 0.0690718225231293 0.850728986854332 55 0.957574728998297 6 4 2 -6.73639788254547 LTS-006 chr1 248814053 248814126 74 * OR2T27 0.387 1 NA 0.620936872129655 3 0.235055312639387 2 2 0 -5.76442355332398 LTS-006 chr1 248814127 248814178 52 * OR2T27 NA 0 NA 0.491 1 NA NA NA NA NA LTS-006 chr1 248814179 248844595 30417 * OR2T27 NA 0 NA 1.066 1 NA NA NA NA NA LTS-006 chr1 248844596 249212341 367746 * c(MIR3124, PGBD2, OR14I1, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.4739763316719 13 0.0174902903466539 0.989976390044387 303 0.256558094821007 4 2 2 -9.03933072678485 LTS-006 chr1 249212342 249214134 1793 * PGBD2 NA 0 NA 0.88869222202477 31 0.196169287217219 3 NA NA -5.7644229349396 LTS-006 chr2 38824 39980 1157 * FAM110C 0.312 1 NA 0.728325603382496 21 0.141799724628653 2 2 0 -5.7644399821847 LTS-006 chr2 39981 668533 628553 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0.306827173458509 11 0.0590492860398683 0.64955520303498 293 0.162446799211989 2 2 0 -7.05913518634394 LTS-006 chr2 668534 3278131 2609598 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.281666011840892 22 0.05833707470995 0.775073751729422 762 0.187399956370981 2 2 0 -7.10956328138751 LTS-006 chr2 3278132 26681109 23402978 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-006 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, SELENOI, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, DRC1, NT5C1B, OTOF, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.278308896415817 229 0.0563316776783631 0.705747643952646 10637 0.189534473317351 2 2 0 -6.74766797462248 LTS-006 NA NA NA NA LTS-006 chr2 26681110 26682781 1672 * OTOF NA 0 NA 0.901 1 NA NA NA NA NA LTS-006 chr2 26682782 27556598 873817 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, DNAJC5G, GTF3C2, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SLC5A6, OTOF) 0.269855768943278 47 0.0627749161828005 0.752588142145383 2087 0.1723468481081 2 2 0 -6.80052515738569 LTS-006 chr2 27556599 27556604 6 * GTF3C2 NA 0 NA 1.181 1 NA NA NA NA NA LTS-006 chr2 27556605 27610113 53509 * c(GTF3C2-AS1, ZNF513, GTF3C2, PPM1G, EIF2B4, SNX17) 0.18951354997684 9 0.0560270272081054 1.03789698907886 355 0.224535720558303 4 4 0 -6.73696081891026 LTS-006 chr2 27610114 33789534 6179421 * c(LOC100271832, BRE-AS1, MIR4263, LOC100505716, MIR4765, GPN1, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, RASGRP3, IFT172, GCKR, SNORD53, LINC00486, NRBP1, EHD3, C2orf71, LTBP1, CAPN14, MEMO1, YPEL5, PPM1G, PPP1CB, TRMT61B, TTC27, SLC30A6, BIRC6, NLRC4, RBKS, FNDC4, SPAST, SRD5A2, SNORD92, MIR558, XDH, GALNT14, CCDC121, CLIP4, LBH, C2orf16, YIPF4, ZNF512, DPY30, CAPN13, NA NA NA NA NA NA NA NA NA LTS-006 MRPL33, BRE, SUPT7L) 0.273728689341972 101 0.0583010011292539 0.726647642182721 5338 0.178897370957412 2 2 0 -6.81940483674423 LTS-006 NA NA NA NA LTS-006 chr2 33789535 33809294 19760 * c(RASGRP3, FAM98A) 0.17 1 NA 0.8236231541501 19 0.284970830558157 3 3 0 -5.76484585371229 LTS-006 chr2 33809295 36583183 2773889 * c(LOC100288911, MYADML, FAM98A) 0.244587090648381 3 0.0346987031457949 0.728653823364371 93 0.157390373106226 2 2 0 -7.09859331995682 LTS-006 chr2 36583184 43010455 6427272 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, HAAO, PRKD3, GPATCH11, QPCT, EML4, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, MTA3, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L, HNRNPLL, FEZ2) 0.174420936389987 37 0.0561739175152402 1.02870535956197 4173 0.270015880288461 4 4 0 -6.75491170666351 LTS-006 chr2 43010456 43015704 5249 * HAAO 0.159 1 NA 1.55754624883509 9 0.34694143758149 7 7 0 -5.76442528607938 LTS-006 chr2 43015705 43450138 434434 * c(HAAO, ZFP36L2) 0.397 1 NA 1.29160432254105 25 0.250085365425488 6 6 0 -5.77481863260874 LTS-006 chr2 43450139 51255832 7805694 * c(LINC01126, LINC01119, MIR548AD, LRPPRC, SIX2, GTF2A1L, STON1, PPP1R21, PLEKHH2, EPAS1, RHOQ, FSHR, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LHCGR, LINC01121, EPCAM, MSH2, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, ZFP36L2, MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, NRXN1, CRIPT, PREPL, SOCS5) 0.356820267332941 122 0.0481884404807066 1.40477320314727 4384 0.471349701525009 6 4 2 -6.8694558859641 LTS-006 chr2 51255833 51256341 509 * NRXN1 NA 0 NA 1.25589684910882 11 0.209601223105383 5 NA NA -5.76442716438413 LTS-006 chr2 52929682 52929780 99 * character(0) 0.433 1 NA 1.0416711688513 2 0.0721248916810279 4 4 0 -5.76441101246058 LTS-006 chr2 52929781 66662414 13732634 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR3682, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, CCT4, B3GNT2, GPR75, CFAP36, CCDC85A, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, SPRED2, EFEMP1, CEP68, PSME4, EHBP1, ERLEC1, LGALSL, LOC339803, C2orf74, LOC339807, PRORSD1P, TSPYL6, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, MDH1, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, PEX13, BCL11A, NA NA NA NA NA NA NA NA NA LTS-006 AFTPH, FANCL, CCDC88A, RPL23AP32, RTN4, PELI1, PPP4R3B, RAB1A, REL, RPS27A, PAPOLG, SLC1A4, SPTBN1, MEIS1-AS3, UGP2, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, USP34, SERTAD2, ACYP2) 0.445438573236223 97 0.0947369515627822 0.971040744698403 5714 0.248129781811892 4 2 2 -7.21144629753951 LTS-006 NA NA NA NA LTS-006 chr2 66662415 66662465 51 * character(0) NA 0 NA 1.48 1 NA NA NA NA NA LTS-006 chr2 66662466 66799594 137129 * MEIS1 NA 0 NA 1.32459154946684 131 0.318068677701194 6 NA NA -5.76491022584062 LTS-006 chr2 67624466 70781005 3156540 * c(SNORA36C, LOC100133985, MIR3126, C1D, PROKR1, SNRNP27, WDR92, ASPRV1, GKN2, APLF, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, PLEK, ETAA1, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.453206785722905 63 0.0681705302763348 0.958519863527147 2645 0.39524306608685 4 2 2 -6.85695556016341 LTS-006 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.358 1 NA NA NA NA NA LTS-006 chr2 70781031 73492824 2711794 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.450048879995569 76 0.0952321512493493 1.04344196954574 2622 0.244979376252535 4 2 2 -6.75753561359514 LTS-006 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.832 1 NA NA NA NA NA LTS-006 chr2 73493010 87092840 13599831 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, NA NA NA NA NA NA NA NA NA LTS-006 REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.456636341524011 140 0.0495438903490097 0.990576933406572 7030 0.254854297714754 4 2 2 -7.08676518147697 LTS-006 NA NA NA NA LTS-006 chr2 87092841 87426774 333934 * c(ANAPC1P1, LOC285074, RMND5A) 0.440576004864623 2 0.0134350288425444 0.635771973979401 167 0.313506418957656 2 1 1 -6.99191837633594 LTS-006 chr2 87929222 90248945 2319724 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.447192671620859 27 0.0557042966113805 1.04416609057671 868 0.671645856194961 4 2 2 -6.77781101180446 LTS-006 chr2 90248946 90249415 470 * character(0) 0.21 1 NA 1.01612717662245 7 0.195384114965758 4 4 0 -5.76441202533346 LTS-006 chr2 90249416 91925073 1675658 * LOC654342 0.353555510636327 3 0.00642910050732865 1.0711414656784 27 0.329217867920932 4 3 1 -8.25762682473425 LTS-006 chr2 91925074 91925139 66 * character(0) 0.398 1 NA 1.613 1 NA NA NA NA NA LTS-006 chr2 91925140 91937699 12560 * character(0) 0.22775239808499 8 0.0911544019781821 1.66861616806328 48 0.600994757163736 7 6 1 -6.73491237466509 LTS-006 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.66614642250439 17 0.454063750706751 8 NA NA -5.76441547753805 LTS-006 chr2 95537183 95537572 390 * c(TEKT4, LOC442028) 0.373 1 NA 1.06026152926687 9 0.256642964273543 4 4 0 -5.76441262345472 LTS-006 chr2 95537573 97757339 2219767 * c(MIR3127, ARID5A, TRIM43, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, KCNIP3, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, MRPS5, TRIM43B, FAHD2CP, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.415189851452347 65 0.0896765367863858 1.01349089368766 2928 0.243623526612739 4 2 2 -6.7617642521064 LTS-006 chr2 97757340 97757399 60 * FAHD2B NA 0 NA 0.846 1 NA NA NA NA NA LTS-006 chr2 97757400 97877478 120079 * c(FAHD2B, ANKRD36) 0.418648338263787 7 0.0810202796482813 0.715739523214358 89 0.42396349211407 2 1 1 -6.74929927367246 LTS-006 chr2 97877479 98262549 385071 * c(COX5B, ANKRD36, ANKRD36B) NA 0 NA 0.831845644521865 37 0.208497052787374 3 NA NA -5.77501092459545 LTS-006 chr2 98262550 98278423 15874 * c(ACTR1B, COX5B) NA 0 NA 1.06127640252232 93 0.187052799720087 4 NA NA -5.76461535462019 LTS-006 chr2 98278424 98280235 1812 * ACTR1B NA 0 NA 0.832 1 NA NA NA NA NA LTS-006 chr2 98280236 99232873 952638 * c(ACTR1B, CNGA3, VWA3B, TMEM131, UNC50, INPP4A, COA5, LINC01125, ZAP70) 0.248 1 NA 0.684486781579807 905 0.146570010032419 2 2 0 -5.7926630996955 LTS-006 chr2 99232874 116510817 17277944 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, TXNDC9, MERTK, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, NMS, LYG1, MITD1, FBLN7, TMEM182, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, FOXD4L1, CREG2, LINC00116, FHL2, PSD4, LYG2, UNC50, IL36RN, IL36B, IL37, IL36A, SULT1C4, NA NA NA NA NA NA NA NA NA LTS-006 RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, LINC01191, SULT1C3, NPAS2, NPHP1, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, IL36G, DPP10, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, RGPD4-AS1, RFX8, PAX8, IL1R2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MALL, PDCL3, C2orf49, UXS1, SLC35F5, TSGA10, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.290973267686828 218 0.0670736233299124 0.700013253496565 8969 0.191550247494398 2 2 0 -6.82044988691353 LTS-006 NA NA NA NA LTS-006 chr2 116510818 116548820 38003 * DPP10 0.214 1 NA 0.750063449585394 37 0.196110773379321 2 2 0 -5.76646097361488 LTS-006 chr2 116548821 116601918 53098 * DPP10 NA 0 NA 0.792224642266158 74 0.201378812995766 3 NA NA -5.77127035092305 LTS-006 chr2 116601919 135677494 19075576 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, CLASP1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, LOC389033, LINC01120, NOC2LP2, C2orf27B, MGAT5, FAR2P1, LOC440910, NA NA NA NA NA NA NA NA NA LTS-006 POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, TMEM185B, SAP130, MZT2B, TMEM177, TMEM163, AMMECR1L, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, DDX18, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.20437542624714 95 0.0728208881222997 1.03007172303972 7158 0.479976864471468 4 4 0 -6.77554684555455 LTS-006 NA NA NA NA LTS-006 chr2 135677495 135694344 16850 * CCNT2 NA 0 NA 1.303 1 NA NA NA NA NA LTS-006 chr2 135694345 139316787 3622443 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, HNMT, SPOPL, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) 0.117057790008185 7 0.0646823741355365 1.27908424810203 1657 0.280449590582323 6 6 0 -6.90910288273989 LTS-006 chr2 139316788 139429068 112281 * c(NXPH2, SPOPL) 0.131 1 NA 1.48013915926367 131 0.533570658564134 7 7 0 -5.76458147427556 LTS-006 chr2 139429069 140989513 1560445 * c(NXPH2, LRP1B, YY1P2) 0.333 1 NA 1.53124012076613 23 0.402654232350834 7 7 0 -5.76469573226151 LTS-006 chr2 140989514 149837930 8848417 * c(ZEB2-AS1, EPC2, KIF5C, TEX41, ORC4, LRP1B, MBD5, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.294532210021841 19 0.0819730735993328 1.60709630430913 1631 0.56151755192033 8 6 2 -6.78185993425398 LTS-006 chr2 149837931 161135255 11297325 * c(LOC100144595, LY75-CD302, MIR4773-1, MIR4773-2, STAM2, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, ARL5A, MMADHC, GPD2, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, RIF1, CCDC148-AS1, PRPF40A, RPRM, ERMN, RBMS1, MARCH7, TNFAIP6, CACNB4, PKP4, TANC1, ACVR1, NMI, DAPL1, CYTIP, CD302) 0.255212475638125 73 0.0563760105559984 1.86049101294342 5262 0.449370211660289 9 7 2 -6.84623340237841 LTS-006 chr2 161135256 161137708 2453 * RBMS1 NA 0 NA 1.488 1 NA NA NA NA NA LTS-006 chr2 161137709 164460598 3322890 * c(TANK, MIR4785, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, RBMS1, IFIH1, KCNH7) 0.271908683386466 13 0.0834733951166939 1.71675942719969 1193 0.357636539653057 9 7 2 -6.81906060150449 LTS-006 chr2 164460599 165561680 1101082 * c(SNORA70F, COBLL1, GRB14, FIGN) 0.248841340255891 7 0.0372680125832431 2.04285310913 448 1.18281664453343 10 8 2 -6.76234145557119 LTS-006 chr2 165561681 165578557 16877 * COBLL1 NA 0 NA 1.596 1 NA NA NA NA NA LTS-006 chr2 165578558 179369608 13791051 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, LOC100506124, TTC21B-AS1, HOXD-AS2, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, NOSTRIN, XIRP2, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, SLC38A11, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, COBLL1, CERS6, METAP1D, GAD1, GALNT3, GORASP2, STK39, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, NA NA NA NA NA NA NA NA NA LTS-006 HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, LRP2, MIR10B, LINC01124, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, PLEKHA3, SP3, SSB, WIPF1, SCRN3, FASTKD1, TTC21B, METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, TTC30A, PPIG, CIR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 TLK1) 0.238559411322234 152 0.0492507893258144 1.79366034993592 9761 0.571911703361541 8 7 1 -7.02702416888004 LTS-006 NA NA NA NA LTS-006 chr2 179369609 179741741 372133 * c(MIR548N, TTN-AS1, CCDC141, PLEKHA3, TTN) 0.251452710977574 14 0.0430423379609293 1.88288463676517 3196 0.34846464082482 10 8 2 -6.75092402939582 LTS-006 chr2 179741742 183387004 3645263 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, PPP1R1C, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, CWC22, SSFA2, SESTD1) 0.246133907103789 20 0.0390163258676484 1.70552310340402 1182 0.441568930193736 7 6 1 -6.94864961654888 LTS-006 chr2 183387005 189910657 6523653 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, FRZB, ITGAV, FSIP2, PDE1A, GULP1, DNAJC10, ZC3H15, MIR561, TFPI, ZNF804A) 0.229389369283474 63 0.0566101462050207 1.95296607559849 2585 1.16770658022869 11 9 2 -6.77837582972198 LTS-006 chr2 189910658 196602146 6691489 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.223147216633639 18 0.070086501175753 1.79378747130169 2643 0.483442294161061 8 7 1 -6.82243305664197 LTS-006 chr2 196602147 197744755 1142609 * c(LOC100130452, CCDC150, C2orf66, DNAH7, SLC39A10, HECW2, PGAP1, STK17B, GTF3C3) 0.236971609669441 27 0.0381359840092435 1.67267760979216 1210 0.452923558423985 7 6 1 -6.77112284151865 LTS-006 chr2 197744756 197859267 114512 * c(PGAP1, ANKRD44) 0.406 1 NA 1.67770938429654 104 0.272751886139822 8 8 0 -5.76441988079982 LTS-006 chr2 197859268 197964343 105076 * ANKRD44 NA 0 NA 1.69462934734657 110 0.291738571604444 8 NA NA -5.76444424639169 LTS-006 chr2 197964344 197964443 100 * ANKRD44 NA 0 NA 1.058 1 NA NA NA NA NA LTS-006 chr2 197964444 200134753 2170310 * c(HSPE1-MOB4, RFTN2, SATB2, SF3B1, MOB4, HSPD1, HSPE1, PLCL1, BOLL, COQ10B, ANKRD44, MARS2) 0.379166355289697 8 0.0460122266359714 1.15230215034648 847 0.253759765619719 5 3 2 -7.16419906909282 LTS-006 chr2 200134754 201526368 1391615 * c(TYW5, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, SPATS2L, AOX1, FTCDNL1, C2orf47) 0.404576893414428 21 0.117084727156591 1.46274578018294 839 0.43650541038425 7 4 3 -6.75856701014021 LTS-006 chr2 201526369 201680571 154203 * c(LOC100507140, AOX1, AOX2P, BZW1) NA 0 NA 1.35874584396016 83 0.264917892679763 6 NA NA -5.76441070800796 LTS-006 chr2 201680572 201680974 403 * BZW1 NA 0 NA 1.087 1 NA NA NA NA NA LTS-006 chr2 201680975 201722832 41858 * c(CLK1, BZW1) 0.185 1 NA 0.932253400688939 111 0.152843930184574 3 3 0 -5.76956226908351 LTS-006 chr2 201722833 203826788 2103956 * c(SNORD11B, KIAA2012, CLK1, ICA1L, ALS2CR12, FAM117B, ALS2CR11, FAM126B, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, CFLAR) 0.175633942964354 37 0.0739843137339171 0.96315702635244 2819 0.266960750792705 4 4 0 -6.82709063880975 LTS-006 chr2 203826789 211542802 7716014 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4775, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, FASTKD2, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, MAP2, MYL1, NDUFS1, INO80D, CYP20A1, PTH2R, ZDBF2, RPE, SNORA41, RAPH1, NBEAL1, FZD5, CARF, KLF7, ADAM23, NA NA NA NA NA NA NA NA NA LTS-006 NRP2, CD28) 0.185157555968101 78 0.0604605699566297 1.01734709097886 5548 0.271724531060253 4 4 0 -6.74676625571852 LTS-006 NA NA NA NA LTS-006 chr2 211542803 211542916 114 * CPS1 NA 0 NA 1.349 1 NA NA NA NA NA LTS-006 chr2 211542917 211543401 485 * CPS1 0.245 1 NA 1.47130609268207 9 0.376758469638633 7 7 0 -5.76441234837871 LTS-006 chr2 211543402 212241725 698324 * c(CPS1, ERBB4) 0.323 1 NA 1.40343844023702 33 0.171157323960894 6 6 0 -5.77996669506629 LTS-006 chr2 212241726 217366769 5125044 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, PKI55, ERBB4, IKZF2, FN1, ABCA12, VWC2L, ATIC, SMARCAL1, MREG, PECR, MARCH4, BARD1, RPL37A, LINC00607, XRCC5, SPAG16, TMEM169) 0.342626962590844 36 0.127548344398233 1.2955550626837 2063 0.362301056977467 6 4 2 -6.8296812435694 LTS-006 chr2 217366770 220771310 3404541 * c(LOC100129175, MIR3131, MIR4268, MIR3132, ABCB6, ARPC2, SPEG, STK11IP, TMEM198, ZFAND2B, AAMP, CRYBA2, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, OBSL1, DNPEP, CFAP65, PNKD, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, RESP18, MIR153-1, MIR26B, MIR375, PRKAG3, FEV, ANKZF1, ASIC4, USP37, PTPRN, CTDSP1, BCS1L, TMBIM1, RNF25, SLC4A3, SLC11A1, TNP1, TNS1, NA NA NA NA NA NA NA NA NA LTS-006 TUBA4A, DIRC3, VIL1, WNT6, ZNF142, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TTLL4) 0.352006106244788 80 0.0845160122646231 1.40410082767688 5733 0.315948715731303 6 4 2 -6.81150381346599 LTS-006 NA NA NA NA LTS-006 chr2 220771311 222289987 1518677 * EPHA4 NA 0 NA 1.48302805328582 6 0.211837122966365 7 NA NA -5.77703314298661 LTS-006 chr2 222289988 222290027 40 * EPHA4 0.15 1 NA 0.304 1 NA NA NA NA NA LTS-006 chr2 222290028 224463690 2173663 * c(FARSB, MOGAT1, SGPP2, CCDC140, EPHA4, ACSL3, KCNE4, PAX3, SCG2) 0.157088676971051 13 0.0653956400961849 1.10793581794335 755 0.347673850601965 5 5 0 -6.7954474406231 LTS-006 chr2 224463691 230096837 5633147 * c(MIR4439, MIR5702, MIR5703, COL4A3, COL4A4, AP1S3, DAW1, AGFG1, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3) 0.186684396011844 79 0.0436146152576187 1.01474858787344 2712 0.570388724676935 4 4 0 -6.73707230415098 LTS-006 chr2 230096838 230632153 535316 * c(PID1, DNER, TRIP12) NA 0 NA 1.05509434616683 131 0.223049630176828 4 NA NA -5.76742524356397 LTS-006 chr2 230632154 230632273 120 * TRIP12 NA 0 NA 1.234 1 NA NA NA NA NA LTS-006 chr2 230632274 230663576 31303 * TRIP12 0.398 1 NA 1.24477347826976 85 0.128253040107901 5 5 0 -5.76629604675144 LTS-006 chr2 230663577 239353375 8689799 * c(LOC100286922, MIR1471, UBE2F-SCLY, MIR4777, ARL4C, RAMP1, NMUR1, COPS8, SP140, CHRND, CHRNG, AGAP1, COL6A3, DIS3L2, SPATA3, FBXO36, UBE2F, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, TRAF3IP1, GBX2, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, KCNJ13, KLHL30, C2orf82, ASB18, DNAJB3, NCL, NEU2, NA NA NA NA NA NA NA NA NA LTS-006 NPPC, PRLH, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, HES6, ACKR3, PSMD1, PTMA, SNORD20, SAG, RAB17, LOC643387, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, ARMC9, EFHD1, ILKAP, ITM2C, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.374149470093553 228 0.0685810050848153 1.29418137177736 7837 0.32810955925649 6 4 2 -6.84444892334883 LTS-006 NA NA NA NA LTS-006 chr2 239353376 239354958 1583 * ASB1 NA 0 NA 1.665 1 NA NA NA NA NA LTS-006 chr2 239354959 242758475 3403517 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2) 0.378561396216277 157 0.0478260806109791 1.36308799394595 4152 0.570878936846091 6 4 2 -6.73325371409463 LTS-006 chr2 242758476 243037216 278741 * c(NEU4, RTP5, PDCD1, LOC728323) NA 0 NA 1.33626020187548 149 0.201388289286775 6 NA NA -5.76546927451235 LTS-006 chr3 239351 448527 209177 * CHL1 0.296 1 NA 0.754002117485573 157 0.245461342911579 2 2 0 -5.7729467582594 LTS-006 chr3 448528 15095169 14646642 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, CHL1, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, CNTN6, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, NA NA NA NA NA NA NA NA NA LTS-006 LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, SETMAR, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.26880022531173 184 0.0546980089095094 0.713076438759035 8590 0.183309568515794 2 2 0 -6.75110224700177 LTS-006 NA NA NA NA LTS-006 chr3 15095170 28579634 13484465 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, BTD, MIR563, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, COLQ, EOMES, EAF1, NA NA NA NA NA NA NA NA NA LTS-006 KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.255388109340173 67 0.072099760025596 0.673514218760647 4456 0.191089192427223 2 2 0 -7.2441464844977 LTS-006 NA NA NA NA LTS-006 chr3 29322426 40575631 11253206 * c(ACVR2B-AS1, PDCD6IP, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, TRIM71, CMTM8, CX3CR1, XIRP1, TTC21A, STT3B, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, SLC25A38, SNORA6, WDR48, SNORA62, NA NA NA NA NA NA NA NA NA LTS-006 SCN5A, SCN10A, TMPPE, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, DCLK3, RPL14, LRRFIP2, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.271448332877015 110 0.0521739320221527 0.713407982671302 7170 0.425584220641497 2 2 0 -6.73631167277303 LTS-006 NA NA NA NA LTS-006 chr3 40575632 40575685 54 * ZNF621 NA 0 NA 0.931 1 NA NA NA NA NA LTS-006 chr3 40575686 43647237 3071552 * c(KRBOX1, SNRK-AS1, CCDC13-AS1, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CYP8B1, TRAK1, HIGD1A, ZNF621, ZNF662, NKTR, SS18L2, SNRK, ULK4, ANO10, HHATL, FAM198A, VIPR1, POMGNT2, CCK, SEC22C, ZBTB47) 0.238127919392156 29 0.0336777323341762 0.76663849128819 2149 0.370118378798057 3 3 0 -7.1173592362834 LTS-006 chr3 43647238 46623760 2976523 * c(LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2, ZNF502) 0.281615402627297 87 0.065888766804505 0.681963339560882 3735 0.171325906266205 2 2 0 -6.83091240242948 LTS-006 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.803 1 NA NA NA NA NA LTS-006 chr3 46623907 47059256 435350 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.260132008317329 22 0.0519592747617423 0.77830777211298 934 0.21105307459298 2 2 0 -6.80802068319947 LTS-006 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.624 1 NA NA NA NA NA LTS-006 chr3 47061216 56468948 9407733 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, NA NA NA NA NA NA NA NA NA LTS-006 RAD54L2, STAB1, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SEMA3B, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.267800548204048 184 0.0538939577668301 0.719752501157597 15378 0.170743707385353 2 2 0 -6.79326384644167 LTS-006 NA NA NA NA LTS-006 chr3 56468949 57545154 1076206 * c(ARHGEF3-AS1, ASB14, DNAH12, PDE12, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARHGEF3, IL17RD, HESX1) 0.26413503985691 32 0.0808204339280765 0.666152704114229 1382 0.17522151239481 2 2 0 -6.81052795591113 LTS-006 chr3 57545155 57570276 25122 * c(PDE12, ARF4) NA 0 NA 0.748085382154112 91 0.1907127361797 2 NA NA -5.76571800807709 LTS-006 chr3 57570277 57582719 12443 * ARF4 NA 0 NA 1.301 1 NA NA NA NA NA LTS-006 chr3 57582720 57613454 30735 * c(DENND6A, ARF4) 0.322 1 NA 1.17277731297559 45 0.588130531618808 5 5 0 -5.76442924111281 LTS-006 chr3 57613455 59035762 1422308 * c(RPP14, FAM107A, FAM3D, DNASE1L3, C3orf67, KCTD6, DENND6A, FLNB, PDHB, PXK, ABHD6, SLMAP, ACOX2) 0.351965490932895 18 0.105234689476812 1.32232778650492 1539 0.334615802591562 6 4 2 -6.77447581677726 LTS-006 chr3 59737110 67061443 7324334 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.379979695174063 28 0.0433385070171573 1.41767760381684 2188 0.475856294458872 6 4 2 -6.77033760140026 LTS-006 chr3 67061444 73026032 5964589 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, LINC00870, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.384819166021238 28 0.041543818901118 1.27468778734658 1793 0.340616791799331 6 4 2 -6.87059489465013 LTS-006 chr3 73026033 73045985 19953 * character(0) NA 0 NA 0.699 1 NA NA NA NA NA LTS-006 chr3 73045986 89530956 16484971 * c(ZNF717, MIR1324, MIR4795, MIR5688, CADM2-AS2, PPP4R2, EPHA3, PDZRN3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, CNTN3, POU1F1, EBLN2, ZNF654, ROBO1, ROBO2, FAM86DP, CGGBP1) 0.341650034592675 244 0.0989709046382793 1.04152752979779 2442 0.365932265361696 4 3 1 -6.73858712163544 LTS-006 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.02808584031989 31 0.310241217286204 4 NA NA -5.76449750727838 LTS-006 chr3 93591838 93813171 221334 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.467 1 NA 1.00724199601357 301 0.218692774789872 4 4 0 -5.76611714923941 LTS-006 chr3 93813172 122598266 28785095 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, HHLA2, FSTL1, FILIP1L, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, GABRR3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, NA NA NA NA NA NA NA NA NA LTS-006 LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, FAM162A, ZBTB11, MORC1, GOLGB1, GPR15, TUSC7, LINC00636, EPHA6, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, LNP1, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, CD200, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, EAF2, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, OR5AC2, PARP9, ARL6, CMSS1, CASR, RETNLB, CCDC54, MINA, ADGRG7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.450425592383168 254 0.0747435378404867 0.981643848686019 14139 0.319927749624093 4 2 2 -7.17206832725003 LTS-006 NA NA NA NA LTS-006 chr3 122598267 122598291 25 * DIRC2 0.495 1 NA 1.511 1 NA NA NA NA NA LTS-006 chr3 122598292 141161766 18563475 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-006 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.451103558343847 284 0.0766787354980457 1.0348751934467 13601 0.248841126368862 4 2 2 -6.77102706006801 LTS-006 NA NA NA NA LTS-006 chr3 141161767 172224615 31062849 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, LOC101243545, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, PLCH1, TNIK, NA NA NA NA NA NA NA NA NA LTS-006 U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, GPR160, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, CLDN11, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PLD1, PLOD2, PLS1, PLSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 P2RY13, GPR87, XRN1, ATR, PRKCI, MYNN, EIF5A2, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SSR3, SCARNA7, MIR551B, MIR569, TERC, TFDP2, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, LRRC31, PHC3, ARL14, EIF2A, ZIC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 HPS3, ACTRT3, GFM1, B3GALNT1, TNFSF10, GMPS, SLC33A1, EGFEM1P, CHST2, RNF7, TSC22D2, P2RY14) 0.449953015778126 216 0.0591886600677879 0.984306511123064 13293 0.412612283076331 4 2 2 -7.02837881269402 LTS-006 NA NA NA NA LTS-006 chr3 172224616 172241337 16722 * TNFSF10 NA 0 NA 0.985760862761171 27 0.206337316836021 4 NA NA -5.76491645001841 LTS-006 chr3 172241338 172348061 106724 * character(0) NA 0 NA 1.874 1 NA NA NA NA NA LTS-006 chr3 172348062 172349216 1155 * NCEH1 0.261 1 NA 1.79416145081085 24 0.444533493871849 9 9 0 -5.76441295872229 LTS-006 chr3 172349217 172365930 16714 * NCEH1 0.168001925514974 3 0.1424932746951 1.82940229463831 74 0.56353138821992 11 10 1 -6.73471827771963 LTS-006 chr3 172365931 172428569 62639 * NCEH1 NA 0 NA 0.715 1 NA NA NA NA NA LTS-006 chr3 172428570 179111838 6683269 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, ECT2, NLGN1, NAALADL2, KCNMB3, ZNF639, PIK3CA, MFN1, NCEH1, ZMAT3, TBL1XR1, SPATA16) 0.433179104538717 24 0.134939700704007 1.00692892229359 1468 0.29349410418201 4 2 2 -6.76228322670269 LTS-006 chr3 179111839 179117663 5825 * GNB4 0.438 1 NA 1.08801568888416 21 0.229898341923224 4 4 0 -5.76459126176917 LTS-006 chr3 179117664 183704810 4587147 * c(LINC00888, ABCC5, DNAJC19, TTC14, MCF2L2, ATP11B, LAMP3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, PEX5L, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, MRPL47, GNB4, SOX2, MAP6D1, FXR1, B3GNT5, ACTL6A, USP13, KLHL6) 0.459722895538492 38 0.0406002964062925 0.977687307805796 2842 0.226132520777255 4 2 2 -7.1569802783969 LTS-006 chr3 183704811 185431197 1726387 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EHHADH, EIF4G1, LIPH, HTR3D, EPHB3, VPS8, HTR3E, C3orf70, EHHADH-AS1, POLR2H, ABCF3, PSMD2, SENP2, MAGEF1, IGF2BP2-AS1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.462020184760069 66 0.0345640481797695 1.0406060514811 3193 0.228585536009646 4 2 2 -7.15620333247939 LTS-006 chr3 185431198 185866688 435491 * c(IGF2BP2, DGKG, ETV5, NMRAL1P1, TRA2B, IGF2BP2-AS1) 0 1 NA 0.994729530700799 303 0.21402810115868 4 4 0 -5.77233499463272 LTS-006 chr3 185866689 186038564 171876 * DGKG 0.429462485908777 3 0.0756923598081955 1.00719851636627 156 0.208589470898526 4 2 2 -6.73515786290647 LTS-006 chr3 186038565 186256220 217656 * c(DGKG, LOC253573) NA 0 NA 2.151 1 NA NA NA NA NA LTS-006 chr3 186256221 186362703 106483 * c(CRYGS, AHSG, FETUB, DNAJB11, TBCCD1) 0.306119496591241 3 0.0295127091267474 1.50782409407544 221 0.315266537316641 8 6 2 -6.74097483220795 LTS-006 chr3 186362704 187898333 1535630 * c(LOC100131635, ADIPOQ-AS1, RPL39L, RTP1, EIF4A2, FETUB, HRG, LPP-AS2, RTP2, KNG1, FLJ42393, LPP, MASP1, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, ST6GAL1, SST, SNORA81, ADIPOQ) 0.39007233803901 28 0.0552647667546371 1.2722881145957 975 0.328335039091191 6 4 2 -6.79820182203125 LTS-006 chr3 187898334 188123847 225514 * c(FLJ42393, LPP) NA 0 NA 1.077 1 NA NA NA NA NA LTS-006 chr3 188123848 188426739 302892 * LPP 0.20963051450052 2 0.284964032818179 1.20548938923434 54 1.82172410983524 4 4 0 -6.73882677765236 LTS-006 chr3 188426740 188428756 2017 * LPP 0.485 1 NA 1.0643022225343 39 0.251323753115164 4 4 0 -5.76442772267697 LTS-006 chr3 188428757 194084050 5655294 * c(MIR944, DPPA2P3, LINC00887, SNAR-I, OPA1-AS1, TPRG1-AS2, CLDN16, LRRC15, TMEM207, CPN2, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, TPRG1, HES1, OSTN, ATP13A5, IL1RAP, LPP, OPA1, P3H2, HRASLS, GMNC, LOC647323, ATP13A4, MGC2889, TP63, CLDN1) 0.432434840318428 99 0.0480554526626505 1.13877194354454 2549 0.451645299732914 5 3 2 -6.82354087936093 LTS-006 chr3 194084051 195076877 992827 * c(TMEM44-AS1, LOC100507391, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, LINC00884, LSG1, ATP13A3, TMEM44) 0.461248277828747 26 0.040310277368662 1.06883775055547 832 0.251266043354352 4 2 2 -7.0449153721095 LTS-006 chr3 195076878 195112941 36064 * ACAP2 0 1 NA 1.17498331260632 20 0.681703948708096 5 5 0 -5.76442367319563 LTS-006 chr3 195112942 195710993 598052 * c(MIR5692C1, TNK2, MUC20, ACAP2, SDHAP1, APOD, MUC4, PPP1R2, MIR570, SDHAP2) 0.318966350115598 25 0.12129917559489 1.10182347876462 676 0.308254165616956 4 3 1 -6.7703229272253 LTS-006 chr3 195710994 195965509 254516 * c(ZDHHC19, SLC51A, SDHAP1, LINC00885, PCYT1A, TFRC) 0.471 1 NA 1.06560652374176 335 0.246092551656273 4 4 0 -5.76691590817456 LTS-006 chr3 195965510 197609373 1643864 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, NCBP2-AS2, RNF168, DLG1, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.411526074673414 44 0.075448272746731 1.03665553383837 2146 0.237865532448601 4 2 2 -6.77710053103861 LTS-006 chr3 197609374 197770512 161139 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.07123281244518 299 0.202301960076727 4 NA NA -5.76760700782121 LTS-006 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.21 1 NA 0.841636946608296 11 0.356960527484228 3 3 0 -5.76444668703791 LTS-006 chr4 60304 378508 318205 * c(ZNF595, ZNF718, ZNF876P, ZNF732, ZNF141) 0.169950499528492 13 0.077080543955075 0.887508904831906 232 0.280124594257549 4 4 0 -6.81099859148676 LTS-006 chr4 378509 378570 62 * character(0) NA 0 NA 1.021 1 NA NA NA NA NA LTS-006 chr4 378571 2452933 2074363 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, SCARNA22, WHSC1, NELFA, SLBP, HAUS3, ABCA11P, MFSD7, TMEM175, CTBP1-AS2, TMEM129) 0.179140988372078 85 0.0494163186510247 1.00997033612607 3741 0.28700552426621 4 4 0 -6.74878085121698 LTS-006 chr4 2452934 2814273 361340 * c(CFAP99, RNF4, SH3BP2, TNIP2, FAM193A) NA 0 NA 0.978078006284308 317 0.207760989405143 4 NA NA -5.77911789561564 LTS-006 chr4 2814274 2822289 8016 * SH3BP2 NA 0 NA 1.227 1 NA NA NA NA NA LTS-006 chr4 2822290 2822307 18 * SH3BP2 0.338 1 NA 2.917 1 NA NA NA NA NA LTS-006 chr4 2822308 3591556 769249 * c(HTT-AS, MFSD10, ADD1, DOK7, LINC00955, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, LRPAP1, RGS12, SH3BP2, NOP14) 0.352787774799763 79 0.0659043669956282 1.38395110303683 1769 0.437105421088292 7 5 2 -6.78030670880252 LTS-006 chr4 3591557 3591560 4 * LINC00955 0.257 1 NA 2.881 1 NA NA NA NA NA LTS-006 chr4 3591561 4463690 872130 * c(LOC100133461, OTOP1, ADRA2C, ZBTB49, NSG1, LINC00955, FAM86EP, STX18, LYAR, TMEM128) 0.264513796582534 9 0.151115114326059 1.36218292156896 391 0.345600962129147 6 5 1 -6.73350791552581 LTS-006 chr4 4463691 4473261 9571 * STX18 NA 0 NA 0.949 1 NA NA NA NA NA LTS-006 chr4 4473262 10599670 6126409 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, CLNK, EVC2, CRMP1, JAKMIP1, TRMT44, DRD5, EVC, MAN2B2, CCDC96, GPR78, LOC285484, HMX1, USP17L6P, USP17L9P, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, SLC2A9, TBC1D14, SORCS2, AFAP1, S100P, DEFB131, LOC650293, USP17L24, USP17L5, NA NA NA NA NA NA NA NA NA LTS-006 USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, CPZ, ZNF518B, MRFAP1, LOC93622, TADA2B, HTRA3, KIAA0232, WDR1) 0.18205140162205 122 0.0490105962513477 1.04524416717393 3858 0.28121251028648 4 4 0 -6.74213345318923 LTS-006 NA NA NA NA LTS-006 chr4 10599671 11375302 775632 * c(CLNK, MIR572) NA 0 NA 0.939605930847124 25 0.232391315098765 3 NA NA -5.8152198316394 LTS-006 chr4 11375303 11394763 19461 * character(0) NA 0 NA 1.652 1 NA NA NA NA NA LTS-006 chr4 11394764 11396836 2073 * character(0) 0.424 1 NA 1.51393253997776 43 0.265954077668629 7 7 0 -5.76441046490036 LTS-006 chr4 11396837 16675810 5278974 * c(MIR5091, MIR548AX, C1QTNF7, CPEB2, LINC01085, TAPT1, TAPT1-AS1, BOD1L1, FBXL5, LINC01097, LINC01096, FAM200B, CPEB2-AS1, CC2D2A, NKX3-2, BST1, FGFBP2, PROM1, LDB2, RAB28, CD38, HS3ST1, FGFBP1) 0.417893021162758 16 0.0304302481094059 1.32899908230299 1766 0.291115564276088 6 3 3 -6.87619507391257 LTS-006 chr4 16675811 16675898 88 * LDB2 0.495 1 NA 0.969 1 NA NA NA NA NA LTS-006 chr4 16675899 25664239 8988341 * c(SLIT2-IT1, LOC100505912, SLC34A2, PPARGC1A, PACRGL, DHX15, ADGRA3, LCORL, FAM184B, SEPSECS-AS1, ZCCHC4, ANAPC4, KCNIP4-IT1, MIR218-1, LAP3, SEPSECS, DCAF16, LGI2, PI4K2B, GBA3, QDPR, NCAPG, CLRN2, SOD3, MIR573, MED28, KCNIP4, LDB2, CCDC149, SLIT2) 0.454509074000321 46 0.0771762272225663 1.02746562629682 2537 0.248444769678939 4 2 2 -6.78582234096096 LTS-006 chr4 25664240 25664244 5 * SLC34A2 0.349 1 NA 3.544 1 NA NA NA NA NA LTS-006 chr4 25664245 28364246 2700002 * c(SLC34A2, SEL1L3, RBPJ, SMIM20, TBC1D19, STIM2, CCKAR) 0.352203509293262 14 0.111932966596035 1.25224902148419 815 0.427264201854826 6 4 2 -6.82198540051498 LTS-006 chr4 28364247 28372304 8058 * character(0) NA 0 NA 0.784 1 NA NA NA NA NA LTS-006 chr4 28372305 38702349 10330045 * c(MIR4275, MIR4801, PTTG2, ARAP2, TBC1D1, DTHD1, PCDH7, KLF3, PGM2, C4orf19, NWD2, RELL1, KLF3-AS1) 0.466097216641928 22 0.0237204133323601 0.980760563392752 1283 0.237524368733752 4 2 2 -8.04900512750756 LTS-006 chr4 38702350 38777275 74926 * c(KLF3, TLR10) NA 0 NA 1.38436840323611 77 0.435686816083316 6 NA NA -5.76449872739279 LTS-006 chr4 38777276 38797843 20568 * TLR10 NA 0 NA 1.168 1 NA NA NA NA NA LTS-006 chr4 38797844 49009288 10211445 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, LIAS, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, KCTD8, BEND4, GRXCR1, RHOH, LOC401127, KLHL5, RBM47, OCIAD1, COMMD8, TMEM33, CHRNA9, N4BP2, ATP10D, SLAIN2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, NA NA NA NA NA NA NA NA NA LTS-006 UCHL1, UGDH, NSUN7, TMEM156, CWH43, PHOX2B, FAM114A1) 0.445527511914332 142 0.0679093131147085 0.986937977377404 6309 0.253177725164172 4 2 2 -6.94568049696469 LTS-006 NA NA NA NA LTS-006 chr4 49009289 49064107 54819 * CWH43 NA 0 NA 0.938486783349767 43 0.167073683521253 3 NA NA -5.77119437518393 LTS-006 chr4 52709193 52888557 179365 * c(DCUN1D4, LRRC66, SGCB) 0.25 1 NA 0.751621407495337 241 0.161606245107714 2 2 0 -5.77965422486994 LTS-006 chr4 52888558 56238886 3350329 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.252846025185778 16 0.0858796638714118 0.736655707370615 1433 0.232968138897615 2 2 0 -6.81792898308898 LTS-006 chr4 56238887 57897570 1658684 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.263749945725139 30 0.0466218462925283 0.66618910687352 1592 0.169118050183273 2 2 0 -6.86562891387565 LTS-006 chr4 57897571 57976456 78886 * c(IGFBP7-AS1, IGFBP7) NA 0 NA 0.707548497293141 25 0.185948854975412 2 NA NA -5.76441044150481 LTS-006 chr4 60137689 62598689 2461001 * ADGRL3 0.482 1 NA 0.964576398108588 53 0.263748260919159 4 4 0 -5.86121524772197 LTS-006 chr4 62598690 68906584 6307895 * c(EPHA5-AS1, CENPC, EPHA5, ADGRL3, TECRL, STAP1, GNRHR, TMPRSS11A, LOC401134, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.443449223093358 31 0.0871331449348442 1.01695129380794 1237 0.280193532352977 4 2 2 -6.75452385837806 LTS-006 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.321403777825451 45 0.266303952185271 0 NA NA -5.76462977520644 LTS-006 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 1.019 1 NA NA NA NA NA LTS-006 chr4 68907461 69363297 455837 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.458758048216666 19 0.0303234030400584 1.03898746465386 410 0.256451052487881 4 2 2 -7.16787324854679 LTS-006 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.863 1 NA NA NA NA NA LTS-006 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.81988914397102 43 0.433577161574223 9 NA NA -5.76448011112869 LTS-006 chr4 69512431 69512573 143 * character(0) NA 0 NA 1.179 1 NA NA NA NA NA LTS-006 chr4 69512574 77021433 7508860 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CSN1S1, CSN2, CSN3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, UTP3, NA NA NA NA NA NA NA NA NA LTS-006 UGT2A2, OPRPN, CXCL6, CXCL11, CXCL5, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, CABS1, USO1, SLC4A4, CDKL2, MOB1B, ADAMTS3, G3BP2) 0.451010527042308 101 0.0514233621831344 1.00766264437626 4645 0.251736774714142 4 2 2 -6.85602581030371 LTS-006 NA NA NA NA LTS-006 chr4 77021434 77026783 5350 * ART3 0 1 NA 0.91165553842381 23 0.628920041795721 3 3 0 -5.76442799382672 LTS-006 chr4 77026784 77494795 468012 * c(FAM47E, MIR4450, FAM47E-STBD1, CCDC158, ART3, NUP54, SHROOM3, STBD1, SCARB2) 0.371931423858349 12 0.199198317505369 1.0003936792046 559 0.259927113971256 4 3 1 -6.75077335399541 LTS-006 chr4 77494796 77631215 136420 * SHROOM3 NA 0 NA 0.782 1 NA NA NA NA NA LTS-006 chr4 77631216 90165588 12534373 * c(THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, PPM1K, RASGEF1B, TIGD2, DMP1, DSPP, FGF5, SEC31A, WDFY3, CNOT6L, C4orf22, NAP1L5, GK2, COQ2, FAM13A-AS1, GPRIN3, ANXA3, HNRNPD, IBSP, SOWAHB, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, NA NA NA NA NA NA NA NA NA LTS-006 PLAC8, PKD2, NUDT9, HERC6, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, MRPL1, BMP3, SPP1, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, HERC3, CCNG2, ABCG2, HNRNPDL) 0.272504554197264 144 0.0780245301913271 0.69551999328392 7576 0.198266483388791 2 2 0 -6.78635493862483 LTS-006 NA NA NA NA LTS-006 chr4 90165589 98109018 7943430 * c(PDLIM5, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.273438810544051 30 0.0750863793761298 0.760034576010048 1637 0.784994791346519 2 2 0 -6.77413548240368 LTS-006 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-006 chr4 98480011 148441214 49961204 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LINC01095, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, LSM6, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, ZNF827, MGAT4D, SPATA5, BBS12, FREM3, MMAA, NA NA NA NA NA NA NA NA NA LTS-006 SGMS2, SYNPO2, EDNRA, EGF, EIF4E, ELF2, ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ZNF330, LINC01091, RPL34-AS1, STPG2, ANK2, GYPA, GYPB, GYPE, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MANBA, MGST2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PITX2, EXOSC9, GAR1, PCDH18, USP53, POU4F2, OTUD4, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, MAML3, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, ABCE1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UCP1, UGT8, ELOVL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, TTC29, CASP6, SLC10A7, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, LAMTOR3, PDE5A, INPP4B, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.266348189672042 298 0.0688562528618632 0.708171134244896 18120 0.239763565220901 2 2 0 -6.73569205854537 LTS-006 NA NA NA NA LTS-006 chr4 148441215 148441519 305 * EDNRA NA 0 NA 0.536 1 NA NA NA NA NA LTS-006 chr4 148441520 148803104 361585 * c(MIR4799, EDNRA, TMEM184C, ARHGAP10, PRMT9) 0.308881024111522 4 0.0288328516337412 0.593399415148736 329 0.125702060544199 1 1 0 -7.85170691600007 LTS-006 chr4 148803105 148827703 24599 * ARHGAP10 NA 0 NA 0.687 1 NA NA NA NA NA LTS-006 chr4 148827704 155155745 6328042 * c(MIR3140, MAB21L2, SH3D19, DCLK2, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, NR3C2, GATB, DKFZP434I0714, DCHS2, FBXW7, RPS3A, SFRP2, TLR2, FAM160A1, ARHGAP10, MND1, FHDC1, SNORD73A, LRBA) 0.276565874372259 17 0.0849808802025491 0.690918716287334 2419 0.172700469045445 2 2 0 -6.80497282647714 LTS-006 chr4 155155746 159091128 3935383 * c(CTSO, RBM46, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, PLRG1, DCHS2, PDGFC, TDO2, MAP9, LRAT) 0.269239693961862 74 0.0531844864264549 0.758846696666227 1968 0.634052096936755 2 2 0 -6.76218368551678 LTS-006 chr4 159091129 183836203 24745075 * c(MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, FAM218A, C4orf45, DCTD, TRIM60, AGA, C4orf46, TMEM192, ETFDH, PALLD, ANP32C, FBXO8, GK3P, GPM6A, LINC01098, HMGB2, HPGD, TRIM61, GALNTL6, NEK1, NPY1R, NPY5R, SPOCK3, AADAT, FAM198B, GALNT7, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, DDX60, TENM3, FSTL5, NA NA NA NA NA NA NA NA NA LTS-006 FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, NAF1, HAND2, RAPGEF2, MFAP3L) 0.276346524935873 109 0.0648568891640305 0.709568450107744 5974 0.208260968516358 2 2 0 -6.74250974343187 LTS-006 NA NA NA NA LTS-006 chr4 183836204 183836511 308 * DCTD NA 0 NA 0.663 1 NA NA NA NA NA LTS-006 chr4 183836512 186570855 2734344 * c(CLDN24, MIR3945, LINC01093, ENPP6, WWC2-AS2, DCTD, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.277445365821271 32 0.0661310709756548 0.675294367807906 2214 0.183410284581318 2 2 0 -6.84284269289065 LTS-006 chr4 186570856 186611841 40986 * SORBS2 NA 0 NA 0.693818999240502 69 0.0999142919151222 2 NA NA -5.76531067653506 LTS-006 chr4 186611842 186997723 385882 * c(TLR3, SORBS2) NA 0 NA 0.406 1 NA NA NA NA NA LTS-006 chr4 186997724 186997767 44 * TLR3 0.425 1 NA 0.667 1 NA NA NA NA NA LTS-006 chr4 186997768 190878661 3880894 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3) 0.396317103083738 34 0.081751749124092 0.428406818136275 1111 0.114556999733391 0 0 0 -8.57701122452692 LTS-006 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.530407539622553 52 0.64409648709708 1 NA NA -5.76451325060482 LTS-006 chr5 140347 140532 186 * PLEKHG4B 0.356 1 NA 0.972664202561558 3 0.458264479676675 4 4 0 -5.76441202037913 LTS-006 chr5 140533 712144 571612 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.3615018580512 75 0.0580652382402061 1.29647571127034 1108 0.400384414129522 6 4 2 -6.78481689621185 LTS-006 chr5 712145 716871 4727 * character(0) NA 0 NA 1.938 1 NA NA NA NA NA LTS-006 chr5 716872 748684 31813 * character(0) 0.372002215702669 6 0.0801498596380555 2.34531825287446 49 0.721421817507282 14 9 5 -6.73476101046849 LTS-006 chr5 748685 751243 2559 * character(0) NA 0 NA 0.069 1 NA NA NA NA NA LTS-006 chr5 751244 796495 45252 * ZDHHC11 0.410959623345306 6 0.0795606686749175 1.02727260247037 41 0.526406280311339 5 3 2 -6.74030122529573 LTS-006 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 0.53 1 NA NA NA NA NA LTS-006 chr5 801171 840468 39298 * ZDHHC11 0.378 1 NA 0.573549895282754 66 0.366833741867476 1 1 0 -5.76488164089894 LTS-006 chr5 840469 1814783 974315 * c(MIR4277, LOC100506688, MIR4457, MIR4635, SLC12A7, SLC6A19, SLC6A18, NDUFS6, MRPL36, SLC6A3, BRD9, TERT, SDHAP3, LOC728613, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.368834030969597 42 0.0566079955200184 1.37348119444565 1204 0.370271133349194 6 4 2 -6.74878482945128 LTS-006 chr5 1814784 1816701 1918 * NDUFS6 NA 0 NA 1.29059353713213 23 0.164665741197465 6 NA NA -5.76451960416588 LTS-006 chr5 1816702 1877540 60839 * character(0) NA 0 NA 3.982 1 NA NA NA NA NA LTS-006 chr5 1877541 1882182 4642 * IRX4 NA 0 NA 1.90190012135923 49 0.372970024875703 9 NA NA -5.76442806154741 LTS-006 chr5 1882183 1882675 493 * IRX4 NA 0 NA 1.16 1 NA NA NA NA NA LTS-006 chr5 1882676 2749057 866382 * c(IRX2, IRX4) 0.489 1 NA 1.07026703134574 37 0.274851324811707 4 4 0 -5.77326281554322 LTS-006 chr5 2749058 36049113 33300056 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4637, MIR4636, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, ADCY2, SUB1, PAPD7, C1QTNF3, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAP, UGT3A2, ADAMTS16, DNAH5, CCT5, PDZD2, FBXL7, ICE1, AMACR, LINC01018, RAI14, LINC01019, LOC285692, LOC285696, DROSHA, LINC01020, NA NA NA NA NA NA NA NA NA LTS-006 LOC340107, LOC340113, IL7R, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NPR3, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, BRIX1, C5orf22, ANKH, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, AGXT2, ANKRD33B, SRD5A1, TARS, TRIO, GUSBP1, LOC729506, LSP1P3, FASTKD3, IRX1, SPEF2, ADAMTS12, ROPN1L, MED10, OTULIN, SEMA5A, ZNF622) 0.453432353708902 176 0.0658648830916394 1.03449941747532 8600 0.245428089355496 4 2 2 -6.79719036055205 LTS-006 NA NA NA NA LTS-006 chr5 36049114 44310492 8261379 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MROH2B, EGFLAM, NADK2, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, FGF10, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, NIPBL-AS1, LOC648987, SKP2, SLC1A3, C5orf42, MIR580, NA NA NA NA NA NA NA NA NA LTS-006 C6, C7, C9, ZNF131, CARD6, OSMR, LMBRD2, NUP155) 0.448469127715565 69 0.0656653954550858 0.977703032279567 5277 0.286073575170071 4 2 2 -6.94571704677887 LTS-006 NA NA NA NA LTS-006 chr5 44310493 45696278 1385786 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.07019181724267 177 0.199635829530824 4 NA NA -5.79106572147613 LTS-006 chr5 49692017 51376821 1684805 * c(EMB, ISL1, LOC642366, PARP8) 0.473 1 NA 0.942024336208572 411 0.240800874030949 3 3 0 -5.87311209793051 LTS-006 chr5 51376822 53183169 1806348 * c(FST, LOC257396, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, ARL15) 0.456169506224131 39 0.0294983016048526 0.954533914578605 752 0.252162097782964 4 2 2 -7.21481043701525 LTS-006 chr5 53183170 53371333 188164 * c(ARL15, MIR581) 0.275 1 NA 1.45108642410113 12 0.712669432273456 7 7 0 -5.76489555344267 LTS-006 chr5 53371334 53409146 37813 * ARL15 NA 0 NA 0.809044845634925 3 0.0923760430703401 3 NA NA -5.77834938375083 LTS-006 chr5 53409147 68849814 15440668 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, PIK3R1, DHX29, NA NA NA NA NA NA NA NA NA LTS-006 DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.283754423698113 123 0.0602031989454715 0.675503754015702 7096 0.184842112555928 2 2 0 -7.28646796539196 LTS-006 NA NA NA NA LTS-006 chr5 68849815 69373289 523475 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.00715142588765 47 0.289435205538935 4 NA NA -5.7667315447052 LTS-006 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.003 1 NA NA NA NA NA LTS-006 chr5 69717474 70378792 661319 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.38501326785474 87 0.20696341105399 0 NA NA -5.76502254415707 LTS-006 chr5 70378793 70388840 10048 * c(GUSBP9, NAIP, LOC647859) NA 0 NA 1.041 1 NA NA NA NA NA LTS-006 chr5 70388841 90460069 20071229 * c(GUSBP9, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-006 NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 CARTPT, ZFYVE16) 0.280627652683146 192 0.0550567826728095 0.699927444845391 9793 0.364238420563708 2 2 0 -6.76492977353189 LTS-006 NA NA NA NA LTS-006 chr5 90460070 96367965 5907896 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.278682776582072 39 0.0680870879973348 0.654187511151474 2611 0.146342985823222 2 2 0 -7.60982802333468 LTS-006 chr5 96367966 96371342 3377 * character(0) NA 0 NA 0.998166989694047 68 0.260246064422519 4 NA NA -5.76444440064089 LTS-006 chr5 96371343 126771219 30399877 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, NA NA NA NA NA NA NA NA NA LTS-006 PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.265910426555015 189 0.0741750366204034 0.69687551946927 8558 0.196638158446198 2 2 0 -6.83546196869314 LTS-006 NA NA NA NA LTS-006 chr5 126771220 126774040 2821 * MEGF10 NA 0 NA 0.993 1 NA NA NA NA NA LTS-006 chr5 126774041 127607872 833832 * c(PRRC1, FBN2, CTXN3, LINC01184, SLC12A2, MEGF10) 0.271642890863603 19 0.0378029671783232 0.799281013353685 608 0.259920211329737 2 2 0 -6.84304086016749 LTS-006 chr5 127607873 127609502 1630 * FBN2 NA 0 NA 0.59 1 NA NA NA NA NA LTS-006 chr5 127609503 137804918 10195416 * c(VTRNA2-1, MIR874, KIAA1024L, MIR1289-2, MIR3936, MIR3661, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, KIF20A, SEC24A, BRD8, HNRNPA0, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, SLC25A48, ADAMTS19, EGR1, FBN2, FSTL4, SEPT8, ACSL6, JADE2, FBXL21, KLHL3, GDF9, GFRA3, PKD2L2, UQCRQ, AFF4, SLC27A6, HINT1, HSPA4, CHSY3, C5orf66-AS2, LOC340074, CATSPER3, IL3, IL4, IL5, IL9, IL13, IRF1, LOC389332, NA NA NA NA NA NA NA NA NA LTS-006 LECT2, SMAD5, C5orf56, NEUROG1, NPY6R, TIFAB, ISOC1, SAR1B, CDKL3, FAM13B, FAM53C, REEP2, RAPGEF6, KDM3B, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, TRPC7, CCNI2, SKP1, SLC22A4, SLC22A5, SPOCK1, TCF7, TGFBI, MEIKIN, UBE2B, VDAC1, WNT8A, TXNDC15, CAMLG, NME5, PCBD2, PDLIM4, CDC23, P4HA2, LYRM7, CDKN2AIPNL, MYOT, CXCL14, H2AFY, SMAD5-AS1, FNIP1, DDX46, CDC25C) 0.260276508032343 158 0.0726288930063705 0.695046062719401 8015 0.287415128601678 2 2 0 -6.76603444152485 LTS-006 NA NA NA NA LTS-006 chr5 137804919 137909617 104699 * c(EGR1, ETF1, SNORD63, HSPA9) 0.214 1 NA 0.967204298735195 204 0.252441194009452 4 4 0 -5.76861818298335 LTS-006 chr5 137909618 137909764 147 * HSPA9 NA 0 NA 0.669 1 NA NA NA NA NA LTS-006 chr5 137909765 140230613 2320849 * c(SRA1, LINC01024, APBB3, SLC35A4, CTNNA1, ZMAT2, HBEGF, SPATA24, DNAJC18, HARS2, LRRTM2, SNORA74A, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, MZB1, PAIP2, CXXC5, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2, PCDHA9, NA NA NA NA NA NA NA NA NA LTS-006 MATR3, SLC23A1) 0.271275888702902 29 0.0483063652752758 0.69179089959956 2958 0.161823855501118 2 2 0 -6.75917475115116 LTS-006 NA NA NA NA LTS-006 chr5 140230614 140264293 33680 * c(PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 0.685582056502907 207 0.145759135640362 2 NA NA -5.76532783657157 LTS-006 chr5 140264294 140306493 42200 * c(PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 0.928 1 NA NA NA NA NA LTS-006 chr5 140306494 140530529 224036 * c(PCDHB5, PCDHB1, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.21 1 NA 1.00759731772219 439 0.204123668841914 4 4 0 -5.76633735059064 LTS-006 chr5 140530530 140553623 23094 * c(PCDHB17P, PCDHB7, PCDHB6) 0.091 1 NA 0.859496978747683 96 0.248009602954996 3 3 0 -5.76444257038457 LTS-006 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.284 1 NA NA NA NA NA LTS-006 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.289836032978605 2 0.0912167747730647 0.340736785905842 71 0.247938807599543 2 2 0 -6.78301186500827 LTS-006 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.993 1 NA NA NA NA NA LTS-006 chr5 140559822 154397441 13837620 * c(GNPDA1, MIR3141, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, SLC36A1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, LARP1, GEMIN5, PCDHGA12, CCDC69, IL17B, GLRA1, GM2A, NA NA NA NA NA NA NA NA NA LTS-006 RELL2, SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, ANXA6, NDST1, HTR4, ARSI, IRGM, SAP30L-AS1, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, NMUR2, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, SAP30L, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, CNOT8, HAND1, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.182369521409194 262 0.0499883109088116 1.02242583547223 12738 0.993094169354587 4 4 0 -6.73548856085615 LTS-006 NA NA NA NA LTS-006 chr5 154397442 154397502 61 * KIF4B NA 0 NA 0.932 1 NA NA NA NA NA LTS-006 chr5 154397503 159992573 5595071 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, HAVCR1, CYFIP2, LOC285626, LOC285627, KIF4B, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.211968036547599 55 0.057598242818315 0.958686669242809 2700 0.229148064307917 4 4 0 -7.19475029752718 LTS-006 chr5 159992574 159992578 5 * ATP10B NA 0 NA 1.232 1 NA NA NA NA NA LTS-006 chr5 159992579 175311009 15318431 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NUDCD2, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, ATP10B, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, EFCAB9, SH3PXD2B, LOC285593, LOC285629, TLX3, KCNIP1, HMMR, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, NA NA NA NA NA NA NA NA NA LTS-006 SLIT3, BNIP1, SNORA74B, STK10, MIR585, PANK3, CPEB4, STC2, FGF18, ATP6V0E1, CCNG1, BOD1, UBTD2, SFXN1) 0.184520963926934 121 0.0548432929067858 1.02449815661624 5520 0.342130795388763 4 4 0 -6.73785984000381 LTS-006 NA NA NA NA LTS-006 chr5 175311010 175394264 83255 * c(CPLX2, THOC3) 0.308 1 NA 0.57859404067391 105 0.380729702317939 1 1 0 -5.76567676927096 LTS-006 chr5 175394265 175395032 768 * THOC3 NA 0 NA 3.531 1 NA NA NA NA NA LTS-006 chr5 175395033 175541200 146168 * c(FAM153B, THOC3) NA 0 NA 1.53359512303818 83 0.795281910624798 7 NA NA -5.76442031738427 LTS-006 chr5 175541201 175665476 124276 * c(LOC100507387, FAM153B, SIMC1, LOC643201) NA 0 NA 0.9 1 NA NA NA NA NA LTS-006 chr5 175665477 177099262 1433786 * c(MIR4281, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.178029122955506 36 0.0469697639993936 0.996465271010478 3106 0.267193600463635 4 4 0 -6.76136140541506 LTS-006 chr5 177099263 177150966 51704 * c(LOC202181, FAM153A) NA 0 NA 0.114 1 NA NA NA NA NA LTS-006 chr5 177150967 177210850 59884 * FAM153A NA 0 NA 0.185661207824755 41 0.118831577884159 0 NA NA -6.86078234694753 LTS-006 chr5 177210851 177220301 9451 * character(0) NA 0 NA 1.1 1 NA NA NA NA NA LTS-006 chr5 177220302 177673360 453059 * c(N4BP3, HNRNPAB, NHP2, PROP1, GMCL1P1, RMND5B, FAM153C, LOC728554, PHYKPL, COL23A1) 0.177663167680946 8 0.0173529536390783 1.01486158402643 580 0.287825384841043 4 4 0 -6.83902199063123 LTS-006 chr5 177673361 177674507 1147 * COL23A1 NA 0 NA 1.13221534860663 4 0.0933180046936281 5 NA NA -5.76464147984294 LTS-006 chr5 177674508 177690373 15866 * COL23A1 0 1 NA 1.3680680338373 73 0.40224806347105 6 6 0 -5.76441344116478 LTS-006 chr5 177690374 180374817 2684444 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CLK4, CNOT6, ZFP62, CBY3, ZNF354A, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.164704550135881 83 0.0637867696591067 1.30563173553725 3071 0.360002286245478 5 5 0 -6.83208647575807 LTS-006 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.515 1 NA NA NA NA NA LTS-006 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) 0.133522419103834 4 0.0140801278403287 2.56786646382796 66 0.700684591146684 14 13 1 -6.73383155155375 LTS-006 chr5 180429800 180687212 257413 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.134697905022784 18 0.0219518188982411 1.32302669306573 528 0.398697192337809 6 6 0 -6.77792381764684 LTS-006 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 1.58564960634229 17 0.334455296845835 7 NA NA -5.7644186106694 LTS-006 chr6 203389 367481 164093 * DUSP22 0.43 1 NA 0.690631828016871 109 0.257519541928424 2 2 0 -5.76524573957697 LTS-006 chr6 367482 367484 3 * character(0) NA 0 NA 0.626 1 NA NA NA NA NA LTS-006 chr6 367485 391716 24232 * character(0) NA 0 NA 1.941 1 NA NA NA NA NA LTS-006 chr6 391717 10430171 10038455 * c(SCARNA27, TFAP2A-AS1, MIR3691, LOC100506207, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SLC35B3, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, RREB1, NA NA NA NA NA NA NA NA NA LTS-006 SLC22A23, BLOC1S5, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, RIOK1, RIPK1, PRPF4B, FOXQ1, CDYL, LY86, EEF1E1) 0.385533863420157 94 0.0608278509703567 1.27864864853156 4235 0.322778321332863 6 4 2 -6.94443701340539 LTS-006 NA NA NA NA LTS-006 chr6 10430172 10556872 126701 * c(MIR5689, LINC00518, GCNT2) 0.186 1 NA 1.33201075124548 61 0.286014485284137 6 6 0 -5.76475315210097 LTS-006 chr6 10556873 10586074 29202 * GCNT2 NA 0 NA 1.12396970628804 24 0.228897103646968 5 NA NA -5.76567215859968 LTS-006 chr6 10586075 13814340 3228266 * c(TMEM170B, LOC100130357, RANBP9, ELOVL2-AS1, EDN1, PHACTR1, SMIM13, SYCP2L, SIRT5, GCNT2, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, TBC1D7, NOL7, TMEM14C, GFOD1, ELOVL2, PAK1IP1, MCUR1, TMEM14B, ADTRP, GCM2) 0.188066191207872 45 0.0465148178845009 0.959108492227448 2341 0.296969738131859 4 4 0 -6.85284679114929 LTS-006 chr6 13814341 13977259 162919 * c(RNF182, MCUR1) NA 0 NA 0.887317871736623 17 0.218542632804085 3 NA NA -5.7652169809236 LTS-006 chr6 13977260 13977266 7 * RNF182 NA 0 NA 1.278 1 NA NA NA NA NA LTS-006 chr6 13977267 13978275 1009 * RNF182 0.444 1 NA 1.30212306041022 17 0.159190484307692 6 6 0 -5.76445204667441 LTS-006 chr6 13978276 26056516 12078241 * c(SLC17A4, MIR4639, SLC17A2, TRIM38, CAP2, SCGN, SLC17A3, NRSN1, MBOAT1, HDGFL1, E2F3, HIST1H2AA, KDM1B, RBM24, RNF182, RNF144B, HIST1H2BA, GMPR, GPLD1, MYLIP, HIST1H1C, HIST1H2BB, HIST1H1A, ID4, KAAG1, JARID2, NHLRC1, HIST1H2APS1, STMND1, CASC15, GMNN, FAM8A1, DCDC2, TDP2, CDKAL1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, KIF13A, SLC17A1, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, C6orf62, HIST1H2AB, HIST1H3A, NA NA NA NA NA NA NA NA NA LTS-006 HIST1H3C, HIST1H3B, HIST1H4A, HIST1H4B, DTNBP1, CMAHP, CD83, FAM65B, KIAA0319, NUP153) 0.372699969590549 95 0.0466724475169542 1.28313603278198 4608 0.610905097519739 6 4 2 -6.80190012865309 LTS-006 NA NA NA NA LTS-006 chr6 26056517 26056549 33 * HIST1H1C 0.402 1 NA 0.589 1 NA NA NA NA NA LTS-006 chr6 26056550 26056685 136 * HIST1H1C 0.308 1 NA 0.855190908037487 3 0.286517596899969 3 3 0 -5.76441042054962 LTS-006 chr6 26056686 26091336 34651 * c(HIST1H1C, HFE) 0.45 1 NA 0.904632885069961 17 0.25699891279239 3 3 0 -5.76489334633529 LTS-006 chr6 26091337 29759811 3668475 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, LOC285819, ABT1, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HCG11, BTN2A3P, ZSCAN31, ZNF192P1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, NA NA NA NA NA NA NA NA NA LTS-006 ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3D, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4E, HIST1H4L, HIST1H4G, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12 NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ) 0.456526225894235 131 0.0494503541142019 1.00762051913973 3927 0.258866422922972 4 2 2 -6.89681741586848 LTS-006 NA NA NA NA LTS-006 chr6 29759812 29759823 12 * character(0) 0.111 1 NA 1.583 1 NA NA NA NA NA LTS-006 chr6 29759824 29910180 150357 * character(0) 0.424082983262074 34 0.0824022837282825 0.917814309946089 128 1.50103941495011 5 3 2 -6.73883076629219 LTS-006 chr6 29910181 29910189 9 * character(0) 0.453 1 NA 0.504 1 NA NA NA NA NA LTS-006 chr6 29910190 29911227 1038 * character(0) 0.375623494886281 24 0.0788643924170113 0.621188492496761 40 0.449876962524484 6 4 2 -6.73538932676505 LTS-006 chr6 29911228 29911229 2 * character(0) NA 0 NA 0.86 1 NA NA NA NA NA LTS-006 chr6 29911230 29913078 1849 * character(0) 0.327062136576668 14 0.0512557153071572 1.11671174586274 26 0.328778129536529 20 14 6 -6.75622830123449 LTS-006 chr6 29913079 29976262 63184 * character(0) 0.495 1 NA 1.03057675718106 17 0.211267968257767 4 4 0 -5.7644131855202 LTS-006 chr6 29976263 31238522 1262260 * character(0) 0.45659886248822 157 0.0592403307650763 1.02399790651212 3171 0.267369022069569 4 2 2 -6.83559731288157 LTS-006 chr6 31238523 31239050 528 * character(0) 0.353 1 NA 0.596147893487625 9 0.147507721078518 1 1 0 -5.76452920971368 LTS-006 chr6 31239051 31324895 85845 * character(0) 0.376091924424653 27 0.117546656797276 0.754296444199341 85 0.377344676710851 3 2 1 -6.76618489492016 LTS-006 chr6 31324896 31324911 16 * character(0) 0.5 1 NA 0.35 1 NA NA NA NA NA LTS-006 chr6 31324912 32427789 1102878 * character(0) 0.449775239322071 150 0.0643070319826386 1.02598638868225 4608 0.249925012724643 4 2 2 -6.77903355086764 LTS-006 chr6 32427790 32427927 138 * character(0) NA 0 NA 1.00441843243029 5 0.184143965418365 4 NA NA -5.76441198195178 LTS-006 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 2.801 1 NA NA NA NA NA LTS-006 chr6 32485401 32485467 67 * HLA-DRB5 0.313 1 NA 2.80304157328392 5 0.829923972421571 15 15 0 -5.76441013720435 LTS-006 chr6 32485468 32497964 12497 * HLA-DRB5 0.283383378237808 12 0.0440793877480441 3.10559712400607 46 3.08314148811708 16 12 4 -6.73363036181053 LTS-006 chr6 32497965 32629320 131356 * c(HLA-DQA1, HLA-DRB5) 0.305730297716416 99 0.0719120907362808 1.40297554595596 249 1.07121370037784 8 6 2 -6.73539880336119 LTS-006 chr6 32629321 32629716 396 * character(0) 0.412 1 NA 1.03234348214268 5 0.343567606156343 4 4 0 -5.76441013471828 LTS-006 chr6 32629717 32724587 94871 * character(0) 0.411475170956147 25 0.0449103922643004 1.42644709162428 91 1.07404762560871 10 6 4 -6.73951403965194 LTS-006 chr6 32724588 33035512 310925 * character(0) 0.436311038383023 49 0.0758234332328132 0.968905443660697 753 0.899870753297741 4 2 2 -6.73591464896924 LTS-006 chr6 33035513 33054760 19248 * character(0) 0.456186986227717 5 0.0283513668100852 2.20922529468033 127 24.0675675732733 19 10 9 -7.14101536635989 LTS-006 chr6 33054761 57246969 24192209 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4647, MIR4641, MIR4642, MIR4462, MIR5690, MIR5685, MLIP-IT1, RCAN2, CDKN1A, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, NUDT3, IL17F, STK38, EFHC1, BTBD9, FOXP4, KLHDC3, SLC26A8, IP6K3, CLPS, TAF8, C6orf141, MAPK14, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, FANCE, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, NA NA NA NA NA NA NA NA NA LTS-006 TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, FAM83B, ADGRF2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, ICK, ENPP4, FKBP5, CMTR1, CUL9, ANKS1A, UBR2, DAAM2, GLTSCR1L, CD2AP, MTCH1, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, SPDEF, YIPF3, USP49, ZNF451, FBXO9, MDGA1, ADGRF1, BRPF3, GNMT, TNFRSF21, TINAG, GCLC, GLO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 GLP1R, LOC285847, PNPLA1, TREML4, RPL7L1, TMEM14A, GRM4, GSTA1, GSTA2, GSTA3, GSTA4, GUCA1A, GUCA1B, PRICKLE4, PACSIN1, HCRTR2, HMGA1, HSP90AB1, CLPSL1, TREML1, TREML3P, SLC35B2, IL17A, ITPR3, CLPSL2, C6orf222, GLYATL3, GFRAL, LINC00336, RAB44, LINC00951, CRIP3, TRAM2-AS1, KLHL31, MIR206, MCM3, MDFI, MEA1, MEP1A, MLN, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MIR133B, GGNBP1, MUT, RPL10A, NFKBIE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 NFYA, DEF6, MRPL2, CYP39A1, ETV7, PPIL1, RAB23, PEX6, PGC, PGK2, PIM1, PKHD1, CLIC5, TREM2, TREM1, POLH, HMGCLL1, PPARD, GTPBP2, UHRF1BP1, CENPQ, MRPS18A, MRPS10, LRRC1, PPP2R5D, TMEM63B, PRIM2, TBC1D22B, SAYSD1, TRERF1, MAPK13, LRFN2, AARS2, XPO5, PTK7, KIAA1586, CPNE5, BAK1, ENPP5, PRPH2, RHAG, ELOVL5, ZFAND3, RPS10, SRSF3, C6orf132, RPS16P5, C6orf106, MRPL14, BMP5, DLK2, SNRPC, DST, SRF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SRPK1, TAF11, TBCC, MIR586, TCP11, TEAD3, TFAP2B, BYSL, CRISP2, TULP1, LOC730101, GSTA7P, TDRG1, VEGFA, ZNF76, PLA2G7, TFEB, TREML2, COL21A1, TFAP2D, KCNK16, UQCC2, TTBK1, SUPT3H, GCM1, PAQR8, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, MLIP, TJAP1, NCR2, MED20, SLC25A27, BAG2, POLR1C, MAD2L1BP, TRAM2, CUL7, CDC5L) 0.442512974752263 382 0.0876859214553915 1.02526690481805 22276 0.40933086963347 4 2 2 -6.74598381811415 LTS-006 NA NA NA NA LTS-006 chr6 57246970 57254927 7958 * PRIM2 0.383 1 NA 1.26529727427753 3 0.342115477580305 5 5 0 -5.7645426641455 LTS-006 chr6 57254928 57512678 257751 * PRIM2 0.347321047513925 37 0.069474032135332 1.25296069594121 90 0.644485868798648 4 3 1 -6.75056525185764 LTS-006 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.933840472340817 19 0.165975302890492 3 NA NA -5.86501852386196 LTS-006 chr6 62390154 62407067 16914 * KHDRBS2 0.48 1 NA 1.19748144969447 23 0.271171488701495 5 5 0 -5.7644106405215 LTS-006 chr6 62407068 88120416 25713349 * c(KHDC1L, HMGN3-AS1, MIR4282, LOC100506804, KCNQ5-AS1, SYNCRIP, CGA, MRAP2, RWDD2A, MB21D1, COL9A1, COL12A1, COL19A1, COX7A2, RIPPLY2, IRAK1BP1, B3GAT2, SDHAF4, CD109, KHDC3L, CFAP206, PRSS35, LCA5, EEF1A1, KHDRBS2, C6orf163, CEP162, RIMS1, DOPEY1, ZNF292, PHF3, MTO1, IBTK, SENP6, SLC17A5, SNORD50A, FILIP1, HTR1B, HTR1E, DPPA5, EYS, IMPG1, GJB7, SNHG5, NA, MIR30A, MIR30C2, ME1, LOC441155, OOEP, SLC25A51P1, NA NA NA NA NA NA NA NA NA LTS-006 MYO6, NT5E, CYB5R4, LGSN, PGM3, PHIP, DDX43, FAM46A, TMEM30A, LMBRD1, KCNQ5, SMIM8, SNX14, FAM135A, ADGRB3, BCKDHB, SMAP1, RNY4, LINC01590, ELOVL4, SNORD50B, TPBG, TTK, PTP4A1, OGFRL1, LINC00472, KHDC1, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.454929494825566 183 0.0573785277108315 1.00045888207201 8311 0.266211383430024 4 2 2 -7.03677029330312 LTS-006 NA NA NA NA LTS-006 chr6 88120417 88125542 5126 * CFAP206 0.492 1 NA 1.20172080418562 9 0.269168833840605 5 5 0 -5.76441139462322 LTS-006 chr6 88125543 89320589 1195047 * c(SLC35A1, CNR1, CFAP206, ORC3, AKIRIN2, RARS2, SPACA1, RNGTT) 0.300117028719841 9 0.215359260565018 0.936143805926921 570 0.277714465606744 4 3 1 -6.84353353789095 LTS-006 chr6 89320590 89322233 1644 * RNGTT 0.5 1 NA 0.927464915205048 35 0.147087626086966 3 3 0 -5.7645973961947 LTS-006 chr6 89322234 106555025 17232792 * c(LIN28B-AS1, TSTD3, MIR2113, MIR4464, MIR4643, FUT9, PNRC1, ASCC3, BVES, KLHL32, PM20D2, SRSF12, BVES-AS1, EPHA7, ANKRD6, MDN1, UFL1, MMS22L, GABRR1, GABRR2, PNISR, FBXL4, GRIK2, NDUFAF4, LIN28B, UBE2J1, COQ3, POU3F2, PREP, LYRM2, HACE1, RRAGD, PRDM13, BACH2, PRDM1, POPDC3, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, GJA10, USP45, RNGTT, CCNC, FHL5, CASP8AP2) 0.4558825198579 101 0.0771455176344621 1.0021431788509 5169 0.349178910723364 4 2 2 -6.86480183744553 LTS-006 chr6 106555026 106808961 253936 * c(PRDM1, ATG5) NA 0 NA 0.909910541455542 137 0.15982681192803 3 NA NA -5.77646369586966 LTS-006 chr6 106808962 106899512 90551 * character(0) NA 0 NA 0.671 1 NA NA NA NA NA LTS-006 chr6 106899513 106959424 59912 * AIM1 0.276 1 NA 0.592301661170817 9 0.12973734149341 1 1 0 -5.77945866672699 LTS-006 chr6 106959425 121625829 14666405 * c(TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, KPNA5, LINC00222, CEP85L, NA NA NA NA NA NA NA NA NA LTS-006 LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PDSS2, GOPC, BEND3, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ZBTB24, FIG4) 0.26563529921183 119 0.0692914287175466 0.68766347743562 8100 0.21072197224848 2 2 0 -6.88726533907379 LTS-006 NA NA NA NA LTS-006 chr6 121625830 121625835 6 * TBC1D32 NA 0 NA 0.833 1 NA NA NA NA NA LTS-006 chr6 121625836 125144352 3518517 * c(TRDN, SMPDL3A, CLVS2, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1) 0.275373836265671 15 0.0531164040664688 0.745919050505606 801 0.268547308083978 2 2 0 -6.82109659854825 LTS-006 chr6 125144353 125229451 85099 * c(NKAIN2, RNF217-AS1) NA 0 NA 0.799183716473028 55 0.112943545386376 3 NA NA -5.79302660020153 LTS-006 chr6 125229452 125229524 73 * RNF217-AS1 NA 0 NA 1.189 1 NA NA NA NA NA LTS-006 chr6 125229525 125229538 14 * RNF217-AS1 0.436 1 NA 1.734 1 NA NA NA NA NA LTS-006 chr6 125229539 125623189 393651 * c(RNF217, HDDC2, TPD52L1, RNF217-AS1) 0.445130264050066 24 0.0351648035085809 1.08499937219142 521 0.296382256338229 4 2 2 -6.82233125785694 LTS-006 chr6 125623190 126070781 447592 * c(HEY2, HDDC2, LOC643623) NA 0 NA 2.096 1 NA NA NA NA NA LTS-006 chr6 126070782 127768916 1698135 * c(MIR5695, NCOA7, HINT3, HEY2, CENPW, SOGA3, ECHDC1, TRMT11, RNF146, RSPO3, KIAA0408) 0.381921846934699 8 0.0427732810458652 1.33656998516989 705 0.336109967917536 6 4 2 -6.74069995367526 LTS-006 chr6 127768917 127770959 2043 * c(SOGA3, KIAA0408) NA 0 NA 1.066 1 NA NA NA NA NA LTS-006 chr6 127770960 131184975 3414016 * c(SMLR1, TMEM200A, SAMD3, EPB41L2, TMEM244, C6orf58, SOGA3, THEMIS, LAMA2, PTPRK, L3MBTL3, ARHGAP18, KIAA0408) 0.384782579994999 26 0.0806583774083873 1.20565993549032 1379 0.297525267262621 5 3 2 -6.83631838376967 LTS-006 chr6 131184976 131604687 419712 * c(EPB41L2, AKAP7) NA 0 NA 1.26319037886482 202 0.234728554107911 5 NA NA -5.77837228763661 LTS-006 chr6 131604688 131894287 289600 * character(0) NA 0 NA 0.725 1 NA NA NA NA NA LTS-006 chr6 131894288 131910632 16345 * c(ARG1, MED23) 0 1 NA 0.69893351766511 73 0.296596946170944 2 2 0 -5.76442559611897 LTS-006 chr6 131910633 150141403 18230771 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EYA4, TAB2, SASH1, HEBP2, FUCA2, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, NA NA NA NA NA NA NA NA NA LTS-006 ZC3H12D, IFNGR1, ECT2L, NUP43, HMGA1P7, SUMO4, SAMD5, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, FBXO30, STX7, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, MED23, TBPL1, PHACTR2, BCLAF1) 0.271932574980345 181 0.075598921085191 0.693124076371068 9018 0.233377737608835 2 2 0 -6.81366021947149 LTS-006 NA NA NA NA LTS-006 chr6 150141404 151281637 1140234 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C, LRP11) 0.28056986606835 38 0.069826227103182 0.774825464514245 846 0.229039278366689 2 2 0 -6.85348676398493 LTS-006 chr6 151281638 151286056 4419 * MTHFD1L NA 0 NA 0.533 1 NA NA NA NA NA LTS-006 chr6 151286057 151936846 650790 * c(MTHFD1L, RMND1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.29 1 NA 0.658200533598698 446 0.129757445466932 2 2 0 -5.8817203612984 LTS-006 chr6 151936847 151939055 2209 * CCDC170 NA 0 NA 0.745 1 NA NA NA NA NA LTS-006 chr6 151939056 153310807 1371752 * c(ESR1, SYNE1, FBXO5, MTRF1L, VIP, CCDC170, MYCT1) 0.2584155250365 23 0.0448810901490196 0.761911895139426 1443 0.281847504645008 2 2 0 -6.82985030953747 LTS-006 chr6 153310808 167592828 14282021 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, MTRF1L, NA NA NA NA NA NA NA NA NA LTS-006 AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.265846701565047 173 0.0557080642803508 0.70370149958705 6543 0.202933692763867 2 2 0 -6.74155159896385 LTS-006 NA NA NA NA LTS-006 chr6 167592829 167595516 2688 * TCP10L2 0.410071272967731 2 0.0318198051533946 1.05036435111739 58 0.39950401494257 10 6 4 -6.73728362827865 LTS-006 chr6 167595517 167787489 191973 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.29070399489069 9 0.0840304177730369 0.727506681314481 230 0.328309564893573 2 2 0 -6.77001204023399 LTS-006 chr6 167787490 167787505 16 * TCP10 NA 0 NA 0.325 1 NA NA NA NA NA LTS-006 chr6 167787506 167789279 1774 * TCP10 0.348 1 NA 0.273963726229211 48 0.236850140211991 0 0 0 -5.76650151041034 LTS-006 chr6 167789280 170070878 2281599 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.267137256441242 31 0.093233433478981 0.750764594892127 1154 0.204126056480924 2 2 0 -6.848697242462 LTS-006 chr6 170070879 170072349 1471 * WDR27 NA 0 NA 0.578 1 NA NA NA NA NA LTS-006 chr6 170072350 170890384 818035 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.277728067736351 12 0.0613803344284263 0.67173142341488 626 0.433485281807549 2 2 0 -6.74938404334985 LTS-006 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.657163711057454 45 0.166991855483972 2 NA NA -5.7647826689856 LTS-006 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.259 1 NA 0.676256576087078 125 0.162677011481389 2 2 0 -5.7706738271265 LTS-006 chr7 331087 5926027 5594941 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, NA NA NA NA NA NA NA NA NA LTS-006 MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.271541508293447 127 0.0647563805844389 0.716169272021517 5229 0.199136889541603 2 2 0 -6.74673517797466 LTS-006 NA NA NA NA LTS-006 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.486 1 NA NA NA NA NA LTS-006 chr7 5937950 5958596 20647 * CCZ1 NA 0 NA 0.468182238935294 47 0.104128225407665 1 NA NA -5.79038522331036 LTS-006 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.302 1 NA NA NA NA NA LTS-006 chr7 5959444 5984803 25360 * c(RSPH10B, CCZ1) 0.348010461463272 5 0.157580138342369 1.07598755721521 56 0.634759943375672 4 3 1 -6.73399086034331 LTS-006 chr7 5984804 5997509 12706 * RSPH10B NA 0 NA 0.518 1 NA NA NA NA NA LTS-006 chr7 5997510 6026683 29174 * c(RSPH10B, PMS2) NA 0 NA 0.446000402116676 40 0.147204758841693 0 NA NA -5.78379748561134 LTS-006 chr7 6026684 6805469 778786 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.266898108879074 37 0.0471862961732169 0.680332806317478 1300 0.199755067518867 2 2 0 -6.75319194156066 LTS-006 chr7 6805470 6819291 13822 * RSPH10B2 NA 0 NA 0.193 1 NA NA NA NA NA LTS-006 chr7 6819292 6844723 25432 * c(CCZ1B, RSPH10B2) NA 0 NA 0.295213816053244 55 0.195992008357656 0 NA NA -5.79062295901783 LTS-006 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.022 1 NA NA NA NA NA LTS-006 chr7 6845571 14025766 7180196 * c(LOC100131257, ARL4A, GLCCI1, PER4, ETV1, VWDE, CCZ1B, THSD7A, NXPH1, ICA1, COL28A1, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, SCIN, PHF14) 0.273645062221374 56 0.0537815205070659 0.702919432517283 1851 0.305369641075148 2 2 0 -6.73746420742265 LTS-006 chr7 14025767 14669959 644193 * c(DGKB, ETV1) NA 0 NA 0.710973840708416 185 0.1413466692385 2 NA NA -5.7649541198383 LTS-006 chr7 14669960 14712535 42576 * DGKB NA 0 NA 1.016 1 NA NA NA NA NA LTS-006 chr7 14712536 14758273 45738 * DGKB 0.484 1 NA 1.02943745946179 35 0.18649285475307 4 4 0 -5.76441724242201 LTS-006 chr7 14758274 21805143 7046870 * c(MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, AGR2, AGR3, DGKB, AHR, PRPS1L1, TWISTNB, SP8, FERD3L, RPL23P8, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, ABCB5, MACC1, ITGB8, AGMO, MEOX2, ANKMY2, SP4, TWIST1, ISPD, DNAH11, HDAC9) 0.458257605984806 49 0.0432459643825196 1.00571936501546 2448 0.245021534537429 4 2 2 -6.9950563730807 LTS-006 chr7 21805144 21813375 8232 * DNAH11 NA 0 NA 0.696 1 NA NA NA NA NA LTS-006 chr7 21813376 21985734 172359 * c(CDCA7L, DNAH11) 0.272329635893766 7 0.0599829340808899 0.663905316613557 224 0.212046614299711 2 2 0 -6.7430879864153 LTS-006 chr7 21985735 22157878 172144 * character(0) NA 0 NA 1.086 1 NA NA NA NA NA LTS-006 chr7 22157879 30882038 8724160 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, STEAP1B, RPS2P32, OSBPL3, GARS, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, NA NA NA NA NA NA NA NA NA LTS-006 HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, FAM221A, IL6, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, KLHL7, STK31, NPVF, WIPF3, LOC646762, SNORD93, MIR550A1, GGCT, FAM188B, FAM126A, PLEKHA8, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.437319727349602 117 0.0976405114004877 1.01544098976369 5187 0.321441235412353 4 2 2 -6.7489010157013 LTS-006 NA NA NA NA LTS-006 chr7 30882039 30882127 89 * c(INMT-FAM188B, FAM188B) 0.449 1 NA 1.424 1 NA NA NA NA NA LTS-006 chr7 30882128 31692957 810830 * c(INMT-FAM188B, ADCYAP1R1, CCDC129, GHRHR, AQP1, NEUROD6, FAM188B) 0.449525211767074 13 0.0630573609440703 1.19653755531282 604 0.310682616106813 6 3 3 -6.85865541186918 LTS-006 chr7 31692958 31693077 120 * CCDC129 NA 0 NA 0.979 1 NA NA NA NA NA LTS-006 chr7 31693078 34971343 3278266 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.429362513813423 47 0.0786869698421646 1.07136915727659 1448 0.519007558772704 4 2 2 -6.74363456279669 LTS-006 chr7 34971344 34977635 6292 * DPY19L1 NA 0 NA 0.783 1 NA NA NA NA NA LTS-006 chr7 34977636 41726449 6748814 * c(MIR1200, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, MPLKIP, DPY19L1, KIAA0895, VPS41, AMPH, AOAH, FAM183BP, LINC00265, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, HERPUD2, SFRP4, LOC646999, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.454475027347154 75 0.0643135674251939 0.972273858055006 2600 0.23884635640804 4 2 2 -7.05178647291566 LTS-006 chr7 41726450 47852861 6126412 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, IGFBP1, IGFBP3, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, C7orf25, C7orf69, CAMK2B, CCM2, ZMIZ2, NA NA NA NA NA NA NA NA NA LTS-006 POLR2J4, LINC00525, TBRG4, STK17A, H2AFV) 0.46201112337847 107 0.0506211322488288 1.05524222219215 4314 0.710076322865611 4 2 2 -6.94049103096796 LTS-006 NA NA NA NA LTS-006 chr7 47852862 57532512 9679651 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, EGFR-AS1, IKZF1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUN3, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, HUS1, SEPT14, ZNF713, FKBP9P1, VWC2, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, FIGNL1, GUSBP10, LOC650226, SNORA15, UPP1, C7orf69, VOPP1, CCT6A, ZNF479) 0.437308516699231 85 0.10436453431319 0.998312420184015 3522 0.270959642606806 4 2 2 -6.82312517073656 LTS-006 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.49463576426565 17 0.753913310276297 7 NA NA -5.76441035821976 LTS-006 chr7 62758725 62910164 151440 * ZNF733P 0.474 1 NA 0.707950047374587 2 1.22965869248341 2 2 0 -5.76441019975062 LTS-006 chr7 62910165 64639874 1729710 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.445242094980583 21 0.104181229458231 0.912254107428852 612 0.256328441351822 3 2 1 -6.87711504989122 LTS-006 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.583 1 NA NA NA NA NA LTS-006 chr7 64643340 65154779 511440 * c(ZNF92, LOC441242, INTS4P2) NA 0 NA 0.581907267096209 87 0.124122233258566 1 NA NA -5.850821029245 LTS-006 chr7 65154780 65157710 2931 * c(LOC441242, INTS4P2) NA 0 NA 0.91 1 NA NA NA NA NA LTS-006 chr7 65157711 76071229 10913519 * c(POM121C, MIR4284, MIR3914-1, MIR3914-2, MIR4651, MIR4650-1, MIR4650-2, CCL26, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, NA NA NA NA NA NA NA NA NA LTS-006 SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, RHBDD2, RFC2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.44035171619335 86 0.0865017906237885 1.00925262200546 4830 0.318703938974402 4 2 2 -6.77197669506198 LTS-006 NA NA NA NA LTS-006 chr7 76071230 76071237 8 * ZP3 NA 0 NA 1.336 1 NA NA NA NA NA LTS-006 chr7 76071238 76241100 169863 * c(LOC100133091, DTX2, POMZP3, FDPSP2, ZP3, UPK3B) 0.385 1 NA 1.56018923626802 112 0.459492378060285 7 7 0 -5.76473048233105 LTS-006 chr7 76241101 76247452 6352 * c(LOC100133091, POMZP3) NA 0 NA 0.701 1 NA NA NA NA NA LTS-006 chr7 76247453 77558587 1311135 * c(PMS2P9, LOC100133091, APTR, FGL2, RSBN1L, POMZP3, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, TMEM60) 0.435747894144692 9 0.0574168480887313 0.908474905354925 748 0.230761695840305 4 2 2 -6.96838653570622 LTS-006 chr7 77558588 77567025 8438 * PHTF2 NA 0 NA 1.05 1 NA NA NA NA NA LTS-006 chr7 77567026 81593454 4026429 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3C, GNAI1, HGF, GNAT3, RPL13AP17, PHTF2, CACNA2D1, CD36, MAGI2) 0.441102333684904 17 0.114560092117117 1.04375638500678 947 0.238992701347759 4 2 2 -6.7417688090702 LTS-006 chr7 81593455 82073151 479697 * CACNA2D1 NA 0 NA 0.985430909973291 163 0.212392645982766 4 NA NA -5.77828675626683 LTS-006 chr7 82073152 82387472 314321 * PCLO NA 0 NA 1.417 1 NA NA NA NA NA LTS-006 chr7 82387473 82450035 62563 * PCLO 0.327 1 NA 1.3778049850694 32 0.245391162393117 6 6 0 -5.76454280897973 LTS-006 chr7 82450036 86506799 4056764 * c(SEMA3A, KIAA1324L, SEMA3D, PCLO, GRM3, SEMA3E) 0.341916030485685 36 0.0490459696902523 1.49098891187034 1062 0.400158471749405 7 5 2 -6.74091613384265 LTS-006 chr7 86506800 92730116 6223317 * c(LOC101409256, AKAP9, CDK6, DBF4, TP53TG1, RUNDC3B, CYP51A1, C7orf62, ZNF804B, KIAA1324L, FAM133B, STEAP2, STEAP1, LRRD1, DPY19L2P4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, ANKIB1, CROT, SAMD9, SLC25A40, GATAD1, SRI, TMEM243, STEAP4, MTERF1, CFAP69, FZD1, RBM48, NA, GTPBP10, KRIT1, CLDN12, DMTF1) 0.395688759544444 47 0.0780829097534132 1.27464815311847 4151 0.357198988266663 6 4 2 -6.8789564743525 LTS-006 chr7 92730117 92905768 175652 * c(SAMD9L, HEPACAM2, SAMD9, VPS50) NA 0 NA 1.25628781961652 372 0.24224701107364 5 NA NA -5.76887063599784 LTS-006 chr7 92905769 93055753 149985 * c(VPS50, CALCR) 0.476 1 NA 0.956218121694139 135 0.181195880923606 4 4 0 -5.78052637604862 LTS-006 chr7 93055754 96810754 3755001 * c(LOC100506136, MIR4652, SLC25A13, BET1, COL1A2, DLX5, DLX6, DYNC1I1, PEG10, GNG11, GNGT1, DLX6-AS1, C7orf76, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, SDHAF3, MIR489, CASD1, MIR591, MIR653, SHFM1, TFPI2, CALCR, SGCE) 0.456040168596425 23 0.0364354429364634 1.00616307964036 1987 0.234441734340623 4 2 2 -7.01110427807455 LTS-006 chr7 96810755 97866263 1055509 * c(BHLHA15, LMTK2, TECPR1, MGC72080, ASNS, OCM2, SDHAF3, TAC1) 0.379327588398169 11 0.0519707959950936 1.32023197437058 506 0.264196526787472 6 4 2 -6.74066504658433 LTS-006 chr7 97866264 97867827 1564 * TECPR1 NA 0 NA 1.048 1 NA NA NA NA NA LTS-006 chr7 97867828 100320992 2453165 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, TMEM130, NYAP1, ZKSCAN5, CNPY4, MBLAC1, BRI3, TECPR1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, NPTX2, PCOLCE, ACTL6B, NA NA NA NA NA NA NA NA NA LTS-006 PMS2P1, ZCWPW1, C7orf43, BAIAP2L1, MEPCE, AZGP1, SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.447699833261425 91 0.0801378299860421 0.998932257209124 4934 0.236085612652333 4 2 2 -6.78477975400109 LTS-006 NA NA NA NA LTS-006 chr7 100320993 100321091 99 * EPO NA 0 NA 1.041 1 NA NA NA NA NA LTS-006 chr7 100321092 100344353 23262 * c(EPO, ZAN) NA 0 NA 0.587831316364846 38 0.194506979693172 1 NA NA -5.7665666819086 LTS-006 chr7 100344354 100344359 6 * ZAN 0.5 1 NA 2.003 1 NA NA NA NA NA LTS-006 chr7 100344360 100488658 144299 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.449298670838764 34 0.0552179928824646 1.07424109622968 663 2.14282022380428 4 2 2 -6.79148037456235 LTS-006 chr7 100488659 100547265 58607 * ACHE 0.318 1 NA 1.06502838717907 53 0.170272150467902 4 4 0 -5.76557452144931 LTS-006 chr7 100547266 100549499 2234 * character(0) NA 0 NA 1.14337941640451 7 0.303128057176532 5 NA NA -5.76443877245722 LTS-006 chr7 100549500 100549573 74 * character(0) 0.285 1 NA 2.605 1 NA NA NA NA NA LTS-006 chr7 100549574 100550745 1172 * character(0) 0.355206736042249 33 0.100521349307829 2.0668348840127 58 0.676311144866249 15 10 5 -6.73318252719512 LTS-006 chr7 100550746 100550774 29 * character(0) NA 0 NA 1.25 1 NA NA NA NA NA LTS-006 chr7 100550775 100551098 324 * character(0) 0.284260706907453 8 0.0726084164739677 0.536415678896696 38 0.27121942243631 9 7 2 -6.73941848788716 LTS-006 chr7 100551099 100551133 35 * character(0) 0.13 1 NA 1.936 1 NA NA NA NA NA LTS-006 chr7 100551134 100553077 1944 * character(0) 0.348424288384795 67 0.0784091629467613 1.94073500813454 107 0.608543796230704 18 12 6 -6.73499929897965 LTS-006 chr7 100553078 100553081 4 * character(0) NA 0 NA 1.171 1 NA NA NA NA NA LTS-006 chr7 100553082 100624718 71637 * MUC12 0.384374542843538 24 0.0823702756996757 1.19583237148193 102 0.485161514154349 6 4 2 -6.73973336906313 LTS-006 chr7 100624719 100634640 9922 * MUC12 0.472 1 NA 1.17502378031356 17 0.163421054875039 5 5 0 -5.76447468244203 LTS-006 chr7 100634641 102113746 1479106 * c(LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MUC12, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.433347327217945 34 0.112076213087822 1.04253924241796 1988 0.247376033393076 4 2 2 -6.73446737720566 LTS-006 chr7 102113747 102113845 99 * POLR2J NA 0 NA 1.07 1 NA NA NA NA NA LTS-006 chr7 102113846 102257216 143371 * c(RASA4B, SPDYE2B, RASA4, POLR2J, POLR2J3) 0.429 1 NA 0.526429151311601 38 0.377479813973311 1 1 0 -5.76510183801961 LTS-006 chr7 102257217 102277424 20208 * c(SPDYE2B, RASA4, POLR2J2) NA 0 NA 3.436 1 NA NA NA NA NA LTS-006 chr7 102277425 114296545 12019121 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, SPDYE2B, MIR3666, NAMPT, RASA4, LRRC17, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, POLR2J2, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, PUS7, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, NA NA NA NA NA NA NA NA NA LTS-006 RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, ARMC10, IMMP2L, FOXP2, PMPCB, DOCK4) 0.445976371633769 90 0.0642869231600663 0.981951804531158 5808 0.231880862341195 4 2 2 -7.08191291917675 LTS-006 NA NA NA NA LTS-006 chr7 114296546 114304415 7870 * FOXP2 0 1 NA 1.14507172042312 33 0.810744068788516 5 5 0 -5.76442331644831 LTS-006 chr7 114304416 114659102 354687 * c(MDFIC, FOXP2) 0.465575287803764 3 0.0635793467513888 0.927310040893833 205 0.164119363777449 4 2 2 -6.98591446330439 LTS-006 chr7 114659103 134853844 20194742 * c(LOC100130705, SMKR1, RNA5SP244, AASS, FAM3C, CFTR, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, ASZ1, ASB15, FEZF1-AS1, IQUB, C7orf77, MGC27345, RNF133, ZNF800, TFEC, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POT1, HYALP1, TES, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, IMPDH1, IRF5, KCND2, KCP, LINC-PINT, RNF148, NA NA NA NA NA NA NA NA NA LTS-006 ARF5, FEZF1, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MET, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, NRF1, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, PODXL, ING3, CHCHD3, RBM28, TMEM140, METTL2B, ANKRD7, AKR1B10, STRIP2, PTPRZ1, EXOC4, OPN1SW, LRRC4, NA, CCDC136, SLC13A1, SMO, SPAM1, BPGM, MIR592, MIR593, TMEM229A, UBE2H, WNT2, C7orf49, GCC1, ST7, CPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 CALD1, CALU, CAPZA2, CTTNBP2, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, WASL, PLXNA4, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, CEP41) 0.282627996708777 193 0.061111194539248 0.707897932192853 9955 0.213559139463813 2 2 0 -6.75869990565724 LTS-006 NA NA NA NA LTS-006 chr7 134853845 134890701 36857 * c(WDR91, C7orf49) 0 1 NA 0.741174295010027 86 0.19617733434734 2 2 0 -5.76567392037883 LTS-006 chr7 134890702 135636404 745703 * c(NUP205, SLC13A4, WDR91, STRA8, FAM180A, CNOT4, C7orf73, LUZP6) 0.251425638527366 8 0.0210713075057055 0.710114001615511 718 0.238588480026847 2 2 0 -7.1674915185457 LTS-006 chr7 135636405 135661688 25284 * LUZP6 NA 0 NA 1.074 1 NA NA NA NA NA LTS-006 chr7 135661689 141736185 6074497 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, LOC349160, RAB19, NDUFB2, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, TTC26, KDM7A, SLC37A3, NA NA NA NA NA NA NA NA NA LTS-006 TRIM24, MGAM, ADCK2, DGKI, ZC3HAV1L) 0.18920611500005 80 0.0602556578571462 0.991176383823902 4533 0.300568098928349 4 4 0 -6.80263415882651 LTS-006 NA NA NA NA LTS-006 chr7 141736186 141736620 435 * MGAM NA 0 NA 1.303 1 NA NA NA NA NA LTS-006 chr7 141736621 142028507 291887 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.216400161328437 19 0.0625870154498837 1.05391054885473 631 0.281842963440732 3 3 0 -6.81468752185673 LTS-006 chr7 142028508 142045446 16939 * character(0) 0.381 1 NA 1.02136529533518 17 0.44710512482755 4 4 0 -5.76441614557555 LTS-006 chr7 142045447 142498897 453451 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.324210977633732 47 0.106926509556253 1.25147684963931 411 2.80837712863623 7 5 2 -6.74586964185201 LTS-006 chr7 142498898 142499762 865 * character(0) 0.232 1 NA 0.884615848598932 9 0.137598146789846 3 3 0 -5.76441786855975 LTS-006 chr7 142499763 143305591 805829 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.186854531467998 18 0.0332563817650774 1.0301272108846 1323 0.249992445114737 4 4 0 -6.73496338443926 LTS-006 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.122757780403116 41 0.256663616812204 0 NA NA -5.94196085668032 LTS-006 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.517 1 NA NA NA NA NA LTS-006 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) NA 0 NA 1.13253027313247 271 0.347149940212405 5 NA NA -5.77075253880946 LTS-006 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.261 1 NA NA NA NA NA LTS-006 chr7 143883365 143979934 96570 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.721179942659563 72 0.686101861588892 2 NA NA -5.76445720712655 LTS-006 chr7 143979935 143980245 311 * ARHGEF34P NA 0 NA 0.983 1 NA NA NA NA NA LTS-006 chr7 143980246 154685256 10705011 * c(LINC01003, WDR86-AS1, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, C7orf33, EZH2, FABP5P3, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, WDR86, KCNH2, ATP6V0E2-AS1, NA NA NA NA NA NA NA NA NA LTS-006 GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, ARHGEF34P, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.181963153565005 162 0.0553247701251677 1.06200501991855 6790 0.849054084858383 4 4 0 -6.74187091164791 LTS-006 NA NA NA NA LTS-006 chr7 154685257 158937585 4252329 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.188555560069724 52 0.0402181972950698 0.984355048392088 2847 0.57831351901415 4 4 0 -6.75511724353227 LTS-006 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.816 2 0 0 NA NA -Inf LTS-006 chr8 182757 280391 97635 * ZNF596 0.482 1 NA 0.381488851549638 89 0.0968055795123355 0 0 0 -5.76441722397766 LTS-006 chr8 280392 4495107 4214716 * c(TDRP, ERICH1, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.446465001594039 65 0.0463542069288215 0.417145320704612 1698 0.104069002200977 0 0 0 -8.21347896008298 LTS-006 chr8 4495108 4852482 357375 * CSMD1 NA 0 NA 0.386233707372861 23 0.164068348333556 0 NA NA -5.76542639753078 LTS-006 chr8 6264045 6357235 93191 * c(LOC100287015, ANGPT2, MCPH1) 0.248 1 NA 0.716293040117692 91 0.174193712080687 2 2 0 -5.76470998661176 LTS-006 chr8 6357236 10465795 4108560 * c(FAM66B, ZNF705G, FAM66E, ZNF705B, DEFB4B, MIR548I3, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, CLDN23, LOC157273, SGK223, LINC00599, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, DEFB107A, ANGPT2, FAM86B3P, XKR5, USP17L8, USP17L1, MIR124-1, FAM90A7P, FAM90A10P, MSRA, DEFA8P, DEFA9P, DEFA10P, DEFB107B, AGPAT5, USP17L4, USP17L3, SPAG11A, MIR597, DEFA11P, DEFA1B, MCPH1, PPP1R3B, TNKS, ERI1, MFHAS1, NA NA NA NA NA NA NA NA NA LTS-006 RP1L1) 0.271869164521803 44 0.0926594848186083 0.711632674960765 1555 0.272520064929517 2 2 0 -6.73455577052387 LTS-006 NA NA NA NA LTS-006 chr8 10465796 10468110 2315 * RP1L1 0.22307936712142 4 0.0908015234820797 1.1782922696768 62 0.44820792466608 3 3 0 -6.73456456766778 LTS-006 chr8 10468111 26944848 16476738 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, LOC100507156, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, PNMA2, ADAM28, LZTS1, VPS37A, NKX2-6, SGCZ, ADRA1A, CTSB, PEBP4, CDCA2, TDH, C8orf48, DPYSL2, EGR3, R3HCC1, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, GATA4, FGF20, GFRA2, ADAMDEC1, GNRH1, XKR6, LOC286059, NA NA NA NA NA NA NA NA NA LTS-006 MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC389641, LOC392196, USP17L7, LOXL2, LPL, MIR320A, ASAH1, MSR1, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, KCTD9, PINX1, PIWIL2, INTS10, PPP2R2A, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MTMR9, POLR3D, BNIP3L, STC1, MIR598, ZNF705D, FAM90A2P, LOC729732, NUDT18, TUSC3, DOCK5, BIN3-IT1, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, LONRF1, CHMP7, RP1L1, ENTPD4, PHYHIP) 0.265076623348828 271 0.0659018542521929 0.715775068228506 10304 0.464429401840808 2 2 0 -6.74303626281104 LTS-006 NA NA NA NA LTS-006 chr8 26944849 27092814 147966 * character(0) NA 0 NA 1.266 1 NA NA NA NA NA LTS-006 chr8 27092815 27101206 8392 * STMN4 0.244956157804784 5 0.207263117799574 1.04814129393471 76 0.242525054592846 6 5 1 -6.74211233204437 LTS-006 chr8 27101207 27204598 103392 * c(PTK2B, TRIM35, STMN4) 0.42 1 NA 1.10299487138477 107 0.192047480793709 4 4 0 -5.77173121060354 LTS-006 chr8 27204599 41502773 14298175 * c(RBPMS-AS1, LOC100130964, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, GPAT4, UNC5D, LETM2, ADRB3, ESCO2, FBXO16, KCNU1, ADAM3A, IDO2, DUSP4, EIF4EBP1, HTRA4, ADAM32, EPHX2, EXTL3, PTK2B, FGFR1, DDHD2, KIF13B, LEPROTL1, ADAM2, ADAM5, ADGRA2, LSM1, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, IDO1, NUGGC, C8orf86, NA NA NA NA NA NA NA NA NA LTS-006 GOLGA7, SCARA3, SARAF, PNOC, WHSC1L1, ELP3, PPP2CB, CCDC25, BRF2, INTS9, PBK, ZNF395, TEX15, C8orf4, PLEKHA2, LINC00589, MBOAT4, SFRP1, STAR, TACC1, LOC728024, WRN, DUSP26, HMBOX1, ZMAT4, FZD3, RNF122, UBXN8, ZNF703, TTI2, RAB11FIP1, TM2D2, GINS4, PLPP5, MAK16, FUT10, ADAM18, ADAM9, ASH2L, BAG4) 0.4392128439219 157 0.0997326587301126 1.01360875163965 8195 0.256780049473028 4 2 2 -6.78036801036786 LTS-006 NA NA NA NA LTS-006 chr8 41502774 42614321 1111548 * c(AP3M2, CHRNB3, SMIM19, NKX6-3, DKK4, ANK1, IKBKB, PLAT, POLB, MIR486-1, SLC20A2, VDAC3, KAT6A, CHRNA6) 0.376190835288692 26 0.0834777538306787 1.31515832665567 1434 0.311515476190766 6 4 2 -6.74027340960061 LTS-006 chr8 42614322 42620122 5801 * CHRNA6 NA 0 NA 0.902 1 NA NA NA NA NA LTS-006 chr8 42620123 43147586 527464 * c(MIR4469, HGSNAT, FNTA, POTEA, THAP1, RNF170, POMK, HOOK3, CHRNA6) 0.474 1 NA 1.02923388546865 589 0.332494205400942 4 4 0 -5.76443943281171 LTS-006 chr8 43147587 43212050 64464 * POTEA NA 0 NA 0.943845482096215 41 0.249195326953797 3 NA NA -5.76855612291269 LTS-006 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.446 1 NA 1.07923890326767 47 0.17598954009789 4 4 0 -5.77766181381452 LTS-006 chr8 48102988 100889751 52786764 * c(MIR875, C8orf88, STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, LRRC69, MSC-AS1, SBF1P1, ZFHX4-AS1, LOC100287846, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR378D2, MIR4661, MIR4470, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, YTHDF3-AS1, CDH17, RIDA, CPQ, LYPLA1, NCOA2, CEBPD, ARFGEF1, NA NA NA NA NA NA NA NA NA LTS-006 POP1, COPS5, WWP1, STMN2, XKR4, SLC26A7, PCMTD1, OSR2, C8orf34, FAM92A1, NDUFAF6, TMEM68, ADHFE1, UBXN2B, PXDNL, DCAF4L2, RALYL, CRH, RDH10, C8orf37, VPS13B, SLC7A13, MCMDC2, CLVS1, SBSPON, CYP7A1, DECR1, CNBD1, TMEM64, E2F5, SDR16C5, ERICH5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, SPIDR, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, RAD54B, KIAA1429, LINC00588, PTTG3P, GEM, SNORA72, SNORD54, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 STAU2, BHLHE22, NPBWR1, TRIQK, DPY19L4, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, MRPL15, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, FAM150A, XKR9, C8orf87, RBM12B, LOC392232, GDF6, LOC401463, C8orf59, LYN, MIR124-2, MATN2, MCM4, MMP16, MOS, MIR2052HG, FLJ46284, ASPH, MYBL1, NBN, C8orf22, OPRK1, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, PDE7A, ATP6V1H, OTUD6B, PENK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PLAG1, PMP2, SNTG1, GDAP1, PDP1, CNGB3, ESRP1, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, LAPTM4B, RBM12B-AS1, TMEM55A, CHD7, INTS8, PKIA, PAG1, PRKDC, C8orf44, JPH1, CPA6, PEX2, RAB2A, RP1, RPL7, RPL30, ZNF704, LINC01298, RPS20, SDC2, SDCBP, PRDM14, SNX16, SNHG6, SNORD87, NECAB1, LINC00535, SOX17, UG0898H09, FABP9, FABP12, SNAI2, ZBTB10, STK3, TCEA1, TCEB1, MIR599, TERF1, TPD52, TTPA, UBE2V2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 OSGIN2, UQCRB, CA1, CA2, CA3, CA8, CHCHD7, CALB1, EFCAB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NSMAF, TRIM55, LRRCC1, TSPYL5, DNAJC5B, PSKH2, RGS20, RUNX1T1, RIPK2, GGH, CPNE3, TRPA1, FAM110B, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, CYP7B1, TP53INP1, MTFR1, TGS1, ST18, TOX, PTDSS1, RB1CC1) 0.433464644594091 346 0.0877219846232656 0.999848014590384 20044 0.270629951821026 4 2 2 -7.15024178349485 LTS-006 NA NA NA NA LTS-006 chr8 100889752 100899397 9646 * c(COX6C, VPS13B) NA 0 NA 0.906 1 NA NA NA NA NA LTS-006 chr8 100899398 106573753 5674356 * c(MIR3151, BAALC-AS1, MIR4471, MIR5680, CTHRC1, COX6C, BAALC-AS2, ANKRD46, SNX31, DPYS, ZFPM2, DCAF13, RNF19A, RGS22, PABPC1, FBXO43, LRP12, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, RIMS2) 0.415901042589664 55 0.123544108727801 0.964046794887802 2902 1.78173082135135 4 2 2 -6.74822799653053 LTS-006 chr8 106573754 106628768 55015 * ZFPM2 NA 0 NA 1.671 1 NA NA NA NA NA LTS-006 chr8 106628769 110977633 4348865 * c(ABRA, TMEM74, ZFPM2, ANGPT1, RSPO2, EIF3E, OXR1, SYBU, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0.360209405762074 13 0.0601907225153767 1.34315320066395 1629 0.324288062945375 6 4 2 -6.78709143224879 LTS-006 chr8 110977634 113694742 2717109 * c(MIR2053, CSMD3, KCNV1) 0 1 NA 1.40761492647798 391 0.696605623459726 6 6 0 -5.7687595638711 LTS-006 chr8 113694743 117888890 4194148 * c(MIR3610, LINC00536, CSMD3, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H) 0.338994801756982 3 0.0161658075373095 1.40583756410103 707 0.393923134110537 7 5 2 -6.83112500842208 LTS-006 chr8 117888891 121292947 3404057 * c(COLEC10, MAL2, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21-AS1, DEPTOR, TAF2, COL14A1, DSCC1, MED30) 0.298150901791108 33 0.0509532614116589 1.64491155626479 1251 0.415990168765648 8 6 2 -6.75581146963783 LTS-006 chr8 121292948 121298046 5099 * COL14A1 0.357 1 NA 1.58309459543335 12 0.329739601117995 7 7 0 -5.76445590633009 LTS-006 chr8 121298047 122916330 1618284 * c(MTBP, MRPL13, HAS2, HAS2-AS1, SNTB1, COL14A1) 0.366656974089419 3 0.0410365690573664 1.58174126480903 480 0.379596427268244 9 6 3 -6.88955775576734 LTS-006 chr8 122916331 134240294 11323964 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, LRRC6, NSMCE2, ATAD2, ASAP1-IT1, ANXA13, KLHL38, KCNQ3, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, WDYHV1, GSDMC, PVT1, SLA, FER1L6, SQLE, TG, CASC8, LINC00977, NA NA NA NA NA NA NA NA NA LTS-006 OC90, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.376352253436315 117 0.0693077821805951 1.25405644921016 4562 0.328876617652775 5 3 2 -7.08639634342721 LTS-006 NA NA NA NA LTS-006 chr8 134240295 134249441 9147 * c(NDRG1, WISP1) NA 0 NA 0.746 1 NA NA NA NA NA LTS-006 chr8 134249442 136659195 2409754 * c(NDRG1, KHDRBS3, LINC01591, MIR30B, MIR30D, ZFAT, ZFAT-AS1, ST3GAL1) 0.422064040822814 12 0.136067496619742 1.00224514846114 552 0.268335474898656 4 2 2 -6.75396226908514 LTS-006 chr8 136659196 137877601 1218406 * KHDRBS3 NA 0 NA 1.05829688010227 21 0.0873900942408725 4 NA NA -5.82200348058545 LTS-006 chr8 139142262 139142546 285 * FAM135B 0 1 NA 1.79277855202238 5 0.805923259373993 9 9 0 -5.76441035774462 LTS-006 chr8 139142547 139668120 525574 * c(COL22A1, FAM135B) 0.317674293945756 15 0.131665087392578 1.44396331335502 325 0.540413577985098 7 5 2 -6.75168101157099 LTS-006 chr8 139668121 139668300 180 * COL22A1 0.436 1 NA 1.51464399213952 5 0.230942200561093 7 7 0 -5.76441016473047 LTS-006 chr8 139668301 146171437 6503137 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, NA NA NA NA NA NA NA NA NA LTS-006 MROH5, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, KCNK9, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.364983053037588 151 0.0463659053011255 1.35923480910963 8292 0.289916570785141 6 4 2 -6.77896360215709 LTS-006 NA NA NA NA LTS-006 chr8 146171438 146280905 109468 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 1.23431047617374 254 0.239033127572955 5 NA NA -5.76560225461604 LTS-006 chr9 14732 214706 199975 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.312 1 NA 0.691094254295108 41 0.43187086625744 2 2 0 -5.76475209737291 LTS-006 chr9 214707 34556391 34341685 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, SNORD121B, RCL1, TOPORS, CDKN2A, CDKN2B, DMRT2, RRAGA, PSIP1, INSL6, PTENP1, UHRF2, PLIN2, CNTFR, TAF1L, C9orf66, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FAM219A, KDM4C, MLANA, KANK1, DDX58, SLC24A2, DCAF12, B4GALT1, NA NA NA NA NA NA NA NA NA LTS-006 RANBP6, DNAI1, SPINK4, GLDC, TUSC1, LURAP1L, CD274, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ACO1, AK3, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, C9orf24, GLIS3-AS1, MPDZ, TPD52L3, IL33, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.27960347060862 259 0.0660635213561179 0.702758910832888 12643 0.204996989366124 2 2 0 -6.76513706063787 LTS-006 NA NA NA NA LTS-006 chr9 34556392 34568857 12466 * c(CNTFR, CNTFR-AS1) 0.317 1 NA 0.812203933981244 19 0.163362260238329 3 3 0 -5.76572849733357 LTS-006 chr9 34568858 34665274 96417 * c(SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, GALT, IL11RA, CNTFR-AS1) 0.455 1 NA 1.01369934036408 327 0.188919748953422 4 4 0 -5.76495929129694 LTS-006 chr9 34665275 34833887 168613 * c(FAM205A, FAM205BP, CCL19, CCL21) 0.408578040106193 11 0.0778554604846232 1.07319441082754 225 0.281928856766699 5 3 2 -6.75698345443653 LTS-006 chr9 34833888 34835093 1206 * FAM205BP 0.269 1 NA 0.555937325258935 51 0.43087828043314 1 1 0 -5.76441180132243 LTS-006 chr9 34835094 38424108 3589015 * c(GNE, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, DNAJB5, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, FAM214B, ZCCHC7, RECK, HINT2, PIGO, NA NA NA NA NA NA NA NA NA LTS-006 ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.447133671858411 93 0.0763913777202331 1.03820101505807 4649 0.270945907878334 4 2 2 -6.75741357248573 LTS-006 NA NA NA NA LTS-006 chr9 38424109 39178215 754107 * c(FAM95C, FAM201A, ANKRD18A, IGFBPL1, CNTNAP3) 0.458608167949959 3 0.0570993286592174 0.925748714582876 260 0.198853099131381 4 2 2 -6.99407443672629 LTS-006 chr9 39178216 44175697 4997482 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) NA 0 NA 0.831726744590557 90 0.421966725114221 3 NA NA -5.7980840948379 LTS-006 chr9 65602571 66457106 854536 * LOC286297 0.267 1 NA 1.15525271958698 3 0.085231058501777 5 5 0 -5.84485000946848 LTS-006 chr9 66457107 74979577 8522471 * c(FRG1HP, FAM27B, LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf57, C9orf85, C9orf135, TMEM252, SMC5, TMEM2, FXN, MAMDC2, LOC286297, FOXD4L3, APBA1, AQP7P1, PTAR1, MIR204, LOC440896, PTGER4P2-CDK2AP2P2, C9orf135-AS1, ABHD17B, PGM5, PRKACG, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, KLF9, ANKRD20A4, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.39658143749732 64 0.10506118658471 0.997269059381436 2345 0.28321102760696 4 2 2 -6.87640576547293 LTS-006 chr9 74979578 75242816 263239 * c(TMC1, ZFAND5) NA 0 NA 1.802 1 NA NA NA NA NA LTS-006 chr9 75242817 97885758 22642942 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, LOC100132077, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, TMC1, CARNMT1, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, SUSD3, ALDH1A1, FANCC, FBP1, FAM120A, VPS13A, AGTPBP1, NA NA NA NA NA NA NA NA NA LTS-006 BICD2, CDK20, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, IARS, LINC01501, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, PCA3, PCSK5, GOLM1, PHF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SHC3, NUTM2F, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, RFK, KIF27, BARX1, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, TLE1, TLE4, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, MFSD14B, C9orf3, FBP2, FGD3, GNA14) 0.371630386183289 195 0.0896263698639714 1.30386388027668 10487 0.469696429004839 6 4 2 -6.83560818753045 LTS-006 NA NA NA NA LTS-006 chr9 97885759 98209594 323836 * c(FANCC, PTCH1) 0.414 1 NA 1.25987849862223 143 0.276660667049382 5 5 0 -5.77145455263257 LTS-006 chr9 98209595 98279325 69731 * c(LOC100507346, PTCH1) NA 0 NA 1.3028919146567 157 0.30370742537621 6 NA NA -5.76518432254464 LTS-006 chr9 98279326 98637945 358620 * c(LINC00476, ERCC6L2) NA 0 NA 0.73 1 NA NA NA NA NA LTS-006 chr9 98637946 117074810 18436865 * c(FAM225B, LINC00476, LOC100132781, LINC00092, MIR548Q, MIR3134, CCDC180, LOC100499484, MSANTD3-TMEFF1, MIR4668, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CTSV, CYLC2, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, ZNF883, ABCA1, LPAR1, AAED1, ZNF367, ANKS6, ALAD, NA NA NA NA NA NA NA NA NA LTS-006 FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, FKBP15, KIAA0368, TDRD7, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, INVS, GNG10, FAM225A, LOC286359, OR13C9, OR13D1, NA, HSD17B3, GAS2L1P2, MURC, ERCC6L2, OR13C2, C9orf152, SNX30, MIR32, LOC441454, LOC441455, NUTM2G, STX17-AS1, PALM2-AKAP2, MUSK, NCBP1, TRMO, POLE3, NANS, MRPL50, EPB41L4B, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 STX17, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, MIR455, SUSD1, LRRC37A5P, TAL2, TGFBR1, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, SVEP1, NR4A3, HDHD3, FSD1L, HSDL2, MFSD14C, TMEM246, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, PTBP3) 0.440736889699845 274 0.085227770672316 1.01427475254155 13080 0.637117952980445 4 2 2 -6.74801194849405 LTS-006 NA NA NA NA LTS-006 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.535 1 NA NA NA NA NA LTS-006 chr9 117085363 117089956 4594 * ORM1 0.403338733044205 3 0.140592792608061 0.350928568873242 44 0.307282696211681 3 2 1 -6.75722422610457 LTS-006 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.184 1 NA NA NA NA NA LTS-006 chr9 117092173 125670692 8578520 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, ZBTB6, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, OR1L4, WHRN, PHF19, FBXW2, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GSN, TNC, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, PDCL, RAB14, RC3H2, CDK5RAP2, PSMD5, PTGS1, LINC00474, SNORD90, NA NA NA NA NA NA NA NA NA LTS-006 TLR4, TRAF1, C5, AKNA, MRRF, RBM18, TNFSF8, ATP6V1G1, TNFSF15) 0.456757247163518 119 0.0418039199764238 1.03628350570409 4768 0.246686300980436 4 2 2 -6.93777638497901 LTS-006 NA NA NA NA LTS-006 chr9 125670693 125772852 102160 * c(ZBTB6, RABGAP1, ZBTB26) NA 0 NA 0.975269976833591 245 0.183905719186985 4 NA NA -5.77030393394362 LTS-006 chr9 125772853 125777757 4905 * RABGAP1 NA 0 NA 0.549 1 NA NA NA NA NA LTS-006 chr9 125777758 125873740 95983 * c(RABGAP1, GPR21, MIR600HG) 0.208 1 NA 0.693737719166681 151 0.131004725998704 2 2 0 -5.76565187524841 LTS-006 chr9 125873741 135940093 10066353 * c(LOC100129034, LOC100272217, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, POMT1, NEK6, USP20, SLC27A4, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, AK8, TTC16, OLFML2A, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, ABL1, NR5A1, PHYHD1, CIZ1, GAPVD1, NA NA NA NA NA NA NA NA NA LTS-006 NR6A1, SNORA65, SNORD62A, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, QRFP, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, STRBP, PPP6C, LRRC8A, BARHL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SH3GLB2, PSMB7, DOLPP1, DENND1A, GPR107, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, MIR601, TSC1, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C5, GTF3C4, LHX2, MED27, PTGES, RALGPS1) 0.260604110639442 219 0.0669992299986328 0.708275058546543 13123 0.27910087905312 2 2 0 -6.74503692343876 LTS-006 NA NA NA NA LTS-006 chr9 135940094 135947295 7202 * CEL NA 0 NA 1.70844642135961 39 1.15580978325187 8 NA NA -5.76441085331124 LTS-006 chr9 135947296 135957827 10532 * character(0) NA 0 NA 0.444 1 NA NA NA NA NA LTS-006 chr9 135957828 141070283 5112456 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, TUBB4B, UBAC1, OLFM1, AGPAT2, CELP, SDCCAG3, NOXA1, WDR5, ADAMTS13, CACFD1, SLC2A6, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, NA NA NA NA NA NA NA NA NA LTS-006 LCN6, DBH, STKLD1, QSOX2, SARDH, ABCA2, FCN1, FCN2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, ABO, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, OBP2B, OBP2A, GLT6D1, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, LCN10, STPG3, NRARP, NOTCH1, PAEP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MRPS2, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, REXO4, PTGDS, KCNT1, RALGDS, RPL7A, RXRA, CARD9, FAM163B, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, ADAMTSL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PPP1R26, SEC16A) 0.267260959414365 290 0.0567885020905936 0.720537915841278 9619 0.290711369135884 2 2 0 -6.74706668467667 LTS-006 NA NA NA NA LTS-006 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.666224360364905 5 0.184577084168106 2 NA NA -5.7645027366082 LTS-006 chr10 94832 94870 39 * TUBB8 0.429 1 NA 0.323 1 NA NA NA NA NA LTS-006 chr10 94871 1779553 1684683 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, TUBB8, LINC00200, PRR26, IDI2-AS1, ADARB2-AS1, IDI2) 0.27524628499027 25 0.0601107866082841 0.705035215056955 1169 0.162527097600869 2 2 0 -6.73792209388466 LTS-006 chr10 1779554 1779703 150 * ADARB2 NA 0 NA 0.68130475058634 7 0.0792758895671733 2 NA NA -5.76442995023872 LTS-006 chr10 3109703 3124516 14814 * PFKP 0.488 1 NA 0.970052119819361 11 0.245627100962562 4 4 0 -5.76498403777291 LTS-006 chr10 3124517 15161274 12036758 * c(LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, OPTN, NET1, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, C10orf111, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, LINC00705, AKR1C8P, IL2RA, IL15RA, ITIH2, AKR1C6P, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, NA NA NA NA NA NA NA NA NA LTS-006 FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, PRPF18, AKR1C3, CDC123, NMT2, USP6NL) 0.456599288019839 174 0.0481631779976802 0.988434296184837 6100 0.299518957391261 4 2 2 -7.03536394538712 LTS-006 NA NA NA NA LTS-006 chr10 15161275 15600057 438783 * c(PPIAP30, FAM171A1, ITGA8, NMT2) 0 1 NA 0.981370881561793 252 0.251694551683423 4 4 0 -5.77512344641623 LTS-006 chr10 15600058 15883594 283537 * c(FAM188A, ITGA8) 0.459219150409917 2 0.0113137084989848 0.983541960355045 217 0.18663487929735 4 2 2 -9.0534371627809 LTS-006 chr10 15883595 15885119 1525 * FAM188A NA 0 NA 0.617 1 NA NA NA NA NA LTS-006 chr10 15885120 17813397 1928278 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, HACD1, PTER) 0.279954106337829 27 0.0904612114070488 0.658852618020628 1061 0.206262561409355 2 2 0 -6.87368406211218 LTS-006 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.546 1 NA NA NA NA NA LTS-006 chr10 17842448 17898299 55852 * c(MRC1, NA, TMEM236) NA 0 NA 0.304637145770367 39 0.20430467642645 0 NA NA -5.80514697176353 LTS-006 chr10 17898300 17898302 3 * c(MRC1, NA, TMEM236) NA 0 NA 0.627 1 NA NA NA NA NA LTS-006 chr10 17898303 18254637 356335 * c(SLC39A12, MRC1, NA, TMEM236) NA 0 NA 0.523498358592875 129 0.273745360965613 1 NA NA -5.76884353405403 LTS-006 chr10 18254638 18266836 12199 * SLC39A12 NA 0 NA 0.85 1 NA NA NA NA NA LTS-006 chr10 18266837 31817749 13550913 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, WAC, PIP4K2A, MYO3A, NA NA NA NA NA NA NA NA NA LTS-006 APBB1IP, ARMC4, MTPAP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CACNB2, THNSL1, MLLT10, LYZL1, PLXDC2, MASTL, ACBD5, SPAG6) 0.282990655593683 140 0.0661774914927063 0.70977512852677 6036 0.342293195500456 2 2 0 -6.75688970546529 LTS-006 NA NA NA NA LTS-006 chr10 31817750 32307114 489365 * c(KIF5B, ZEB1, ARHGAP12) NA 0 NA 0.687720335000111 179 0.129531489430668 2 NA NA -5.77805038516158 LTS-006 chr10 32307115 32307200 86 * KIF5B NA 0 NA 0.858 1 NA NA NA NA NA LTS-006 chr10 32307201 32806972 499772 * c(NA, KIF5B, EPC1) 0.479 1 NA 0.946367920129716 271 0.313074643414831 3 3 0 -5.78606492229424 LTS-006 chr10 32806973 38645343 5838371 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, NA, ITGB1, PARD3, ZNF248, ZNF33A, ZNF37A, CCDC7, FZD8, CUL2, NRP1, ANKRD30A) 0.433547633299221 51 0.0715018442104132 0.957263179493375 1772 0.210486946985247 4 2 2 -7.1551921660066 LTS-006 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.03352004270665 55 0.20086475004701 4 NA NA -5.76441142805293 LTS-006 chr10 42379906 46934817 4554912 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.45453024410808 51 0.0681437810952752 1.01992478846003 1812 0.30378649000549 4 2 2 -6.80246764289269 LTS-006 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 4.614 1 NA NA NA NA NA LTS-006 chr10 46952744 47756145 803402 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.384090356572626 41 0.0564926932465067 1.34318248381783 304 0.45663597670658 6 4 2 -6.74060441844112 LTS-006 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.288 1 NA NA NA NA NA LTS-006 chr10 47903105 48033122 130018 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.562015168388223 39 0.270402766018481 1 NA NA -5.76547268804383 LTS-006 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 2.212 1 NA NA NA NA NA LTS-006 chr10 48054940 50154176 2099237 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.452944136959941 20 0.0423717880322819 1.08432131127242 1066 0.306136925624531 4 2 2 -6.90838494536336 LTS-006 chr10 50154177 54526782 4372606 * c(TIMM23, MIR4294, FAM170B-AS1, PRKG1-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, DKK1, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, OGDHL, PRKG1, ASAH2, WDFY4, DRGX, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.44834697837569 58 0.0744560857917857 0.987194194964302 2034 0.277473863925616 4 2 2 -6.82979790999909 LTS-006 chr10 54526783 55571431 1044649 * c(MBL2, PCDH15) 0.468187001604014 3 0.012 1.22296982029117 184 0.361075758660861 6 3 3 -9.89575668344198 LTS-006 chr10 55571432 55580891 9460 * PCDH15 NA 0 NA 0.978 1 NA NA NA NA NA LTS-006 chr10 55580892 60154956 4574065 * c(MTRNR2L5, MIR3924, ZWINT, IPMK, CISD1, PCDH15, TFAM, UBE2D1) 0.435609007372011 6 0.0558163655809536 0.979283497919799 619 0.22567933740974 4 2 2 -6.88294515348745 LTS-006 chr10 60154957 60155090 134 * TFAM NA 0 NA 1.377 1 NA NA NA NA NA LTS-006 chr10 60155091 63168072 3012982 * c(MRLN, TMEM26, SLC16A9, FAM13C, LINC01553, ANK3, TFAM, FAM133CP, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.440110984907754 16 0.0320988057929471 1.08096246440838 1422 0.332403277873033 4 2 2 -6.8054262918278 LTS-006 chr10 63168073 71124696 7956624 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.454224870336172 63 0.055217115566738 0.966378730096912 3654 0.236445357633525 4 2 2 -7.18162050106147 LTS-006 chr10 71124697 71128277 3581 * HK1 NA 0 NA 1.33 1 NA NA NA NA NA LTS-006 chr10 71128278 73581763 2453486 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.458353673333056 78 0.0362958598725728 1.05940554016339 2780 0.243496126772482 4 2 2 -7.05044381098594 LTS-006 chr10 73581764 73822243 240480 * c(ANAPC16, PSAP, CHST3, SPOCK2) 0.463065980388341 24 0.0355802573085823 0.998697864843632 286 0.181878235917006 4 2 2 -7.16398973183498 LTS-006 chr10 73822244 74236914 414671 * c(MIR1256, MICU1, ANAPC16, ASCC1, DDIT4, DNAJB12, SPOCK2) 0 1 NA 0.996161431598522 341 0.210715455142837 4 4 0 -5.77160721447702 LTS-006 chr10 74236915 74894526 657612 * c(MIR1256, MIR4676, MICU1, ECD, OIT3, NUDT13, P4HA1, PLA2G12B, MCU) 0.21112146413601 9 0.131012828040277 0.995169340178013 413 0.229354872086307 4 4 0 -6.76698235742534 LTS-006 chr10 74894527 75016207 121681 * c(ECD, CFAP70, DNAJC9, FAM149B1, DNAJC9-AS1, MRPS16) 0.464 1 NA 0.958097544248533 331 0.190277322053211 4 4 0 -5.7756772002925 LTS-006 chr10 75016208 76285147 1268940 * c(CHCHD1, MSS51, CFAP70, ADK, USP54, FUT11, ZSWIM8, AP3M1, GLUD1P3, ANXA7, C10orf55, DNAJC9-AS1, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.459638945424178 24 0.0438276433183508 0.99051433127245 1793 0.226372992587711 4 2 2 -6.98841644482983 LTS-006 chr10 76285148 76349011 63864 * ADK NA 0 NA 1.376 1 NA NA NA NA NA LTS-006 chr10 76349012 76989388 640377 * c(ADK, SAMD8, KAT6B, DUPD1, DUSP13, VDAC2) NA 0 NA 1.25139415568897 406 0.224486968623295 5 NA NA -5.78046681123725 LTS-006 chr10 76989389 89313174 12323786 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, GRID1-AS1, MIR4678, PPIF, NRG3, ADIRF, POLR3A, LDB3, COMTD1, AGAP11, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, ZNF503-AS1, LRIT1, GHITM, GLUD1, ZMIZ1-AS1, GRID1, ANXA11, LRIT2, KCNMA1, SH2D4B, C10orf99, LINC00595, MAT1A, LINC00857, LINC00863, MIR346, CCSER2, FAM35A, ZMIZ1, RGR, RPS24, LOC642361, FAM25A, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NA NA NA NA NA NA NA NA NA LTS-006 NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, VDAC2, MMRN2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, CDHR1, DLG5, OPN4, MINPP1) 0.442434214533505 148 0.0727013105596295 1.0489078568807 4414 0.298877645812802 4 2 2 -6.76582719742056 LTS-006 NA NA NA NA LTS-006 chr10 89313175 89419387 106213 * MINPP1 NA 0 NA 0.779 1 NA NA NA NA NA LTS-006 chr10 89419388 91522605 2103218 * c(KLLN, FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, LIPJ, CFL1P1, IFIT5, FLJ37201, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, ATAD1, LIPF, CH25H, PAPSS2, KIF20B) 0.455730990588497 36 0.0836735673496468 0.971252913761515 1908 0.248460435186336 4 2 2 -6.856530588893 LTS-006 chr10 91522606 91534666 12061 * KIF20B NA 0 NA 1.01034650054284 37 0.504880934734377 4 NA NA -5.76442352711086 LTS-006 chr10 92500553 92672564 172012 * c(RPP30, ANKRD1, HTR7) 0.258 1 NA 0.714794667655431 199 0.148690568746818 2 2 0 -5.76494081060932 LTS-006 chr10 92672565 101557329 8884765 * c(C10orf131, PLCE1-AS1, HECTD2-AS1, FRAT1, MIR1287, MIR3157, SLIT1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4685, MIR5692C2, LINC00502, SORBS1, HOGA1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, NUDT9P1, ABCC2, COX15, ACSM6, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, NKX2-3, SLC35G1, DNTT, CPEB3, RRP12, TBC1D12, FRAT2, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, R3HCC1L, GOT1, BLNK, HELLS, HHEX, NA NA NA NA NA NA NA NA NA LTS-006 HPS1, FFAR4, CYP26C1, IDE, KIF11, CC2D2B, GOLGA7B, C10orf62, EXOSC1, CUTC, PLCE1, PDE6C, PGAM1, EXOC6, CCNJ, MARCH5, PPP1R3C, CRTAC1, CEP55, PI4K2A, TM9SF3, ENTPD7, ALDH18A1, RBP4, AVPI1, HPSE2, MMS19, SFRP5, NOC3L, SLIT1, TLL2, ENTPD1-AS1, UBTD1, TNKS2, SLC25A28, MARVELD1, LOXL4, ZDHHC16, PCGF5, LCOR, PYROXD2, ARHGAP19, BTAF1, PDLIM1, LGI1, OPALIN, ENTPD1, ZNF518A) 0.285167549475755 147 0.0580492112861813 0.700114150399186 8567 0.184016229377627 2 2 0 -6.78957949652091 LTS-006 NA NA NA NA LTS-006 chr10 101557330 101595996 38667 * ABCC2 0.22 1 NA 0.703112582548476 105 0.170678930312875 2 2 0 -5.76443706988339 LTS-006 chr10 101595997 107023841 5427845 * c(TLX1NB, MIR936, DNMBP-AS1, KCNIP2-AS1, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, MIR4482, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, CPN1, CYP17A1, CFAP58, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, DNMBP, CALHM1, DPCD, SEC31B, POLL, BLOC1S2, KCNIP2, TLX1, LBX1-AS1, ARL3, NDUFB8, NFKB2, PAX2, CALHM2, SUFU, PITX3, CNNM2, WBP1L, NA NA NA NA NA NA NA NA NA LTS-006 CWF19L1, HIF1AN, SLF2, PSD, C10orf2, AS3MT, MIR146B, SEMA4G, SCD, FBXW4, SNORA12, TAF5, MIR608, MIR609, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, CFAP43, TRIM8, KAZALD1, SFXN3, ELOVL3, PCGF6, LZTS2, MRPL43, USMG5, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, NEURL1, NOLC1, GSTO1, SH3PXD2A, SLK) 0.250012405146171 114 0.0603966993703298 0.700767210632356 7494 0.193994965124685 2 2 0 -6.80542325699373 LTS-006 NA NA NA NA LTS-006 chr10 107023842 108924301 1900460 * c(SORCS1, SORCS3) NA 0 NA 0.70110470195429 177 0.145669091458935 2 NA NA -5.76845187910519 LTS-006 chr10 109654604 111440719 1786116 * character(0) 0.47 1 NA 1.56280002303066 7 0.390267368668736 7 7 0 -5.76970098979501 LTS-006 chr10 111440720 111713697 272978 * c(ADD3-AS1, XPNPEP1) 0.376276318328056 4 0.0599353818708115 1.27094982361089 141 0.265116426413387 6 4 2 -6.74362150414126 LTS-006 chr10 111713698 111860347 146650 * c(ADD3-AS1, ADD3) NA 0 NA 0.867 1 NA NA NA NA NA LTS-006 chr10 111860348 112839360 979013 * c(MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, RPL13AP6, SHOC2, SMC3, BBIP1) 0.433383218407379 9 0.0527257053058563 0.929000489530856 901 0.205398838845639 4 2 2 -6.88499931307943 LTS-006 chr10 112839361 118139382 5300022 * c(MIR2110, MIR4295, MIR4483, TRUB1, VTI1A, ADRA2A, ADRB1, ATRNL1, GFRA1, HABP2, VWA2, NHLRC2, CCDC172, GUCY2GP, ABLIM1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.445591745533351 59 0.0730041791234688 1.01940578537941 3157 0.274621537321763 4 2 2 -6.76069708195924 LTS-006 chr10 118139383 120070147 1930765 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, FAM204A, SLC18A2) 0.454502152098927 14 0.0323932736200615 1.08244937985719 1415 0.237071444623152 4 2 2 -7.05539050781677 LTS-006 chr10 120070148 120070272 125 * FAM204A NA 0 NA 0.89 1 NA NA NA NA NA LTS-006 chr10 120070273 122216951 2146679 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, INPP5F, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.468302621107651 24 0.0229112971311509 0.948477029361878 1373 0.449553324303237 4 2 2 -8.00013130428662 LTS-006 chr10 122216952 122263014 46063 * PLPP4 NA 0 NA 1.121 1 NA NA NA NA NA LTS-006 chr10 122263015 127310268 5047254 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, CPXM2, CTBP2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.436005643172479 69 0.0768205579546724 1.0316539473801 3124 0.284587208571171 4 2 2 -6.73470049204818 LTS-006 chr10 127310269 127344219 33951 * TEX36 NA 0 NA 1.62 1 NA NA NA NA NA LTS-006 chr10 127344220 127569866 225647 * c(MIR4484, MMP21, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS) 0.355 1 NA 1.35642916518243 488 0.370275192948857 6 6 0 -5.76441121710936 LTS-006 chr10 127569867 127585056 15190 * DHX32 NA 0 NA 0.867 1 NA NA NA NA NA LTS-006 chr10 127585057 131265545 3680489 * c(LINC00601, FANK1-AS1, C10orf90, CLRN3, DOCK1, FOXI2, MGMT, MKI67, PTPRE, NPS, FAM196A, ADAM12, FANK1) 0.415278749216274 57 0.0883638702123059 1.02174890134608 1453 0.324190163477721 4 2 2 -6.75671300988836 LTS-006 chr10 131265546 131265575 30 * MGMT NA 0 NA 1.593 1 NA NA NA NA NA LTS-006 chr10 131265576 132891026 1625451 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, EBF3, TCERG1L, LINC00959, MGMT) 0.415384355958777 8 0.0855527197530438 1.34941575323902 296 0.316573524266685 6 3 3 -6.75591179595019 LTS-006 chr10 132891027 132891202 176 * TCERG1L 0.333 1 NA 1.13025282112887 5 0.233445282668123 5 5 0 -5.76441614766706 LTS-006 chr10 132891203 132965246 74044 * TCERG1L 0.248 1 NA 1.08719998094291 42 0.327177728413476 4 4 0 -5.76551458829155 LTS-006 chr10 132965247 133058518 93272 * TCERG1L NA 0 NA 0.666 1 NA NA NA NA NA LTS-006 chr10 133058519 134694426 1635908 * c(DPYSL4, C10orf91, PWWP2B, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC01164, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.274771033232569 53 0.0796321869342802 0.731296674110674 1013 0.195471150150269 2 2 0 -6.76383134390363 LTS-006 chr10 134694427 134694504 78 * CFAP46 NA 0 NA 0.448 1 NA NA NA NA NA LTS-006 chr10 134694505 134884546 190042 * c(LINC01168, CFAP46, ADGRA1) 0.304918120870984 2 0.00424264068711929 0.383246271315681 164 0.0941924361251644 8 6 2 -13.8483701007932 LTS-006 chr10 134884547 134884560 14 * ADGRA1 NA 0 NA 1.195 1 NA NA NA NA NA LTS-006 chr10 134884561 135271764 387204 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1) 0.278819426653062 29 0.0623113705237794 0.719629140065142 1113 0.182657277608191 2 2 0 -6.74707338338857 LTS-006 chr10 135271765 135352509 80745 * c(CYP2E1, SCART1) 0.291 1 NA 0.729053174844976 139 0.160527552429937 2 2 0 -5.76614866565 LTS-006 chr10 135352510 135473026 120517 * c(CYP2E1, SPRNP1, FRG2B, SYCE1) 0.344044008475369 18 0.0898346520329564 0.758803315210924 148 0.355687100779041 4 3 1 -6.78711121440471 LTS-006 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.962 1 NA NA NA NA NA LTS-006 chr11 193025 193096 72 * SCGB1C1 0.488 1 NA 0.552 1 NA NA NA NA NA LTS-006 chr11 193097 790634 597538 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.254425643673555 115 0.0718858818910607 0.703378357952321 2199 0.312283466484907 2 2 0 -6.76125026561357 LTS-006 chr11 790635 2950475 2159841 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, AP2A2, DUSP8, TOLLIP-AS1, H19, CRACR2B, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, SLC22A18, SLC22A18AS, IGF2-AS, POLR2L, TOLLIP, PIDD1, KCNQ1DN, PNPLA2, MRPL23, RPLP2, MIR483, SNORA52, CHID1, TH, TSPAN4, TNNI2, TNNT3, NA NA NA NA NA NA NA NA NA LTS-006 INS-IGF2, PHLDA2, MUC5B, SLC25A22, MOB2, SYT8, BRSK2, CD81, CD151) 0.295073981870121 205 0.0831992396982698 0.75514080518017 3752 0.212430995505616 2 2 0 -6.9079394246481 LTS-006 NA NA NA NA LTS-006 chr11 2950476 3829591 879116 * c(OR7E12P, OSBPL5, MRGPRE, ART5, PGAP2, MRGPRG-AS1, MRGPRG, ART1, NAP1L4, NUP98, CHRNA10, TSSC2, SNORA54, TRPC2, PHLDA2, ZNF195, CARS) 0.285955584916524 26 0.093437795021402 0.677381838201965 985 0.16749041654727 2 2 0 -6.78514827372652 LTS-006 chr11 3829592 3832385 2794 * PGAP2 NA 0 NA 0.781 1 NA NA NA NA NA LTS-006 chr11 3832386 5776789 1944404 * c(LOC100506082, MIR4687, TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, NA NA NA NA NA NA NA NA NA LTS-006 MMP26, RRM1, TRIM21, STIM1, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, TRIM5) 0.282808042670745 111 0.0549931601733131 0.755047958808926 2370 0.222906891907752 2 2 0 -6.86421470822341 LTS-006 NA NA NA NA LTS-006 chr11 5776790 5809383 32594 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.297348002721412 2 0.0445477272147525 1.2008162669188 40 0.406576891362192 5 4 1 -6.73374352718993 LTS-006 chr11 5809384 9191440 3382057 * c(MIR5691, TRIM22, TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, RBMXL2, KRT8P41, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, TMEM9B-AS1, CYB5R2, NA NA NA NA NA NA NA NA NA LTS-006 AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, RPL27A, SNORA3A, MRPL17, STK33, SMPD1, ST5, SNORA3B, TAF10, TUB, ZNF214, ZNF215, OR52N1, RIC3, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.276912626569157 194 0.0503144059656782 0.727636951522295 5316 0.326941870710166 2 2 0 -6.75960876145178 LTS-006 NA NA NA NA LTS-006 chr11 9191441 17396772 8205332 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, SBF2-AS1, CSNK2A3, GALNT18, NCR3LG1, INSC, ARNTL, TMEM41B, LOC440028, NUCB2, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, PSMA1, PTH, ZBED5, RPS13, LOC644656, RASSF10, SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, CALCA, CALCB, SBF2, FAR1, NA NA NA NA NA NA NA NA NA LTS-006 BTBD10, MICALCL, MICAL2, CTR9) 0.258392529637048 57 0.0709274356495394 0.692722309628565 4792 0.193216607204965 2 2 0 -6.80511735398449 LTS-006 NA NA NA NA LTS-006 chr11 17396773 17396862 90 * NCR3LG1 NA 0 NA 0.881 1 NA NA NA NA NA LTS-006 chr11 17396863 17803939 407077 * c(USH1C, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8) 0.281762929744989 19 0.0533206673556461 0.764537763135626 1047 0.187332792495425 2 2 0 -6.8039616727314 LTS-006 chr11 17803940 18720488 916549 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, KCNC1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.282143928750753 28 0.092996010325755 0.671561870530828 1278 0.242343205940368 2 2 0 -6.76815615618908 LTS-006 chr11 18720489 32875597 14155109 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, EIF3M, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, ELP4, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, DKFZp686K1684, NELL1, CCDC73, BDNF-AS, PAX6, WT1-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, PRRG4, E2F8, CSRP3, NA NA NA NA NA NA NA NA NA LTS-006 KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.265776379839612 118 0.0588541510568682 0.735379014619866 4990 0.188547728725086 2 2 0 -7.08003251915474 LTS-006 NA NA NA NA LTS-006 chr11 32875598 32879648 4051 * PRRG4 NA 0 NA 0.664703244455441 67 0.120163259589709 2 NA NA -5.76505681197301 LTS-006 chr11 32879649 32949493 69845 * c(PRRG4, QSER1) NA 0 NA 1.11 1 NA NA NA NA NA LTS-006 chr11 32949494 33055078 105585 * c(QSER1, DEPDC7) 0.44 1 NA 1.01234654440007 269 0.209031608268427 4 4 0 -5.76497521127659 LTS-006 chr11 33055079 34682597 1627519 * c(C11orf91, HIPK3, CSTF3, ELF5, KIAA1549L, ABTB2, FBXO3, EHF, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, NAT10, TCP11L1, CAT, DEPDC7, CD59) 0.443514638105406 49 0.10113913683634 1.02136558616867 1724 0.289365627797916 4 2 2 -6.74219639978764 LTS-006 chr11 34682598 34903818 221221 * c(EHF, APIP) NA 0 NA 0.904 1 NA NA NA NA NA LTS-006 chr11 34903819 35287262 383444 * c(MIR1343, APIP, SLC1A2, PDHX, CD44) 0.455152637782851 34 0.0322034115396957 0.906191153160049 567 0.219440268233186 4 2 2 -7.10884498598614 LTS-006 chr11 35287263 47447583 12160321 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, FJX1, PAMR1, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, NA NA NA NA NA NA NA NA NA LTS-006 RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.453304313114514 101 0.0732631997365906 1.0410884812536 5470 0.344706134940193 4 2 2 -6.78759436735541 LTS-006 NA NA NA NA LTS-006 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.971 1 NA NA NA NA NA LTS-006 chr11 47447717 48286256 838540 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.390172902105558 21 0.118925807203683 0.960735036126934 1176 0.271674392752385 3 2 1 -6.80411593249248 LTS-006 chr11 48286257 48286424 168 * OR4X1 NA 0 NA 0.948580966034531 5 0.120310847391247 4 NA NA -5.76445991600831 LTS-006 chr11 48286425 48327745 41321 * character(0) NA 0 NA 1.831 1 NA NA NA NA NA LTS-006 chr11 48327746 48346423 18678 * OR4S1 0.363 1 NA 1.2335030702966 21 0.346425605289216 5 5 0 -5.76450309345824 LTS-006 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.329635613002768 116 0.0756294307436113 1.58230033998607 196 0.793127369898594 10 7 3 -6.74192401018863 LTS-006 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.885 1 NA NA NA NA NA LTS-006 chr11 48388749 48453787 65039 * character(0) 0.401 1 NA 1.33408517150398 2 0.82943625433182 6 6 0 -5.76442781848483 LTS-006 chr11 48453788 51526755 3072968 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.447531764991472 17 0.0424223338792753 1.0437094432465 457 0.363722787995682 4 2 2 -6.81417196689739 LTS-006 chr11 51526756 51527703 948 * character(0) NA 0 NA 0.981152701503951 5 0.0746639136397229 4 NA NA -5.76467565606518 LTS-006 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.493 1 NA 0.862192778908023 21 0.171060070206485 3 3 0 -5.7645323739677 LTS-006 chr11 55111585 57414554 2302970 * c(PRG3, OR5I1, OR8I2, APLNR, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, SMTNL1, YPEL4, OR5L2, TIMM10, OR10AG1, OR5J2, OR9G4, SLC43A3, OR5F1, OR5AP2, RTN4RL2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, MIR130A, P2RX3, OR8U8, OR9G9, PRG2, NA NA NA NA NA NA NA NA NA LTS-006 SSRP1, SERPING1, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51, SLC43A1, TNKS1BP1, UBE2L6) 0.424470515409509 109 0.101637083144217 1.10840336836067 2165 0.280867183226068 4 2 2 -6.8231059507096 LTS-006 NA NA NA NA LTS-006 chr11 57414555 57414670 116 * YPEL4 NA 0 NA 0.88 1 NA NA NA NA NA LTS-006 chr11 57414671 59271637 1856967 * c(TMX2-CTNND1, GLYAT, CLP1, CNTF, CTNND1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, DTX4, ZDHHC5, SELENOH, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR5B3, TMX2, FAM111A, BTBD18, ZFP91, OR10W1, GLYATL1, LPXN) 0.448356711216466 42 0.0776938697605801 1.03111772999058 1852 0.245661462116927 4 2 2 -6.75959110458789 LTS-006 chr11 59271638 59404163 132526 * c(MIR3162, OR4D11, OR4D9, OSBP) 0 1 NA 0.991458262925978 167 0.257983239615795 4 4 0 -5.76637807006159 LTS-006 chr11 59404164 59423187 19024 * PATL1 NA 0 NA 1.00639300467987 92 0.21909750467585 4 NA NA -5.76456645704067 LTS-006 chr11 59423188 61730607 2307420 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, MS4A6E, TKFC, DKFZP434K028, GIF, PRPF19, LINC00301, MS4A10, OR10V1, LRRC10B, FADS1, FADS3, MS4A13, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, MS4A7, RAB3IL1, MS4A6A, MS4A5, PGA3, PGA4, STX3, MIR611, TCN1, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, NA NA NA NA NA NA NA NA NA LTS-006 CPSF7, OR10V2P, MS4A8, MS4A14, SYT7, CD5, CD6, MS4A1, MS4A3, FADS2) 0.264010289552625 82 0.0569815854817224 0.733587436531832 4054 0.191556732039798 2 2 0 -6.78985978712633 LTS-006 NA NA NA NA LTS-006 chr11 61730608 66109033 4378426 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, KCNK7, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, PLA2G16, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, CATSPER1, HRASLS5, COX8A, C11orf84, CST6, CTSW, GPHA2, EEF1G, MARK2, ESRRA, FAU, TIGD3, LRRN4CL, HNRNPUL2, FKBP2, ATG2A, GANAB, FAM89B, SNHG1, NA NA NA NA NA NA NA NA NA LTS-006 POLA2, FLRT1, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, EFEMP2, DNAJC4, INCENP, TMEM179B, MALAT1, SLC22A25, SLC22A10, SPDYC, PCNX3, ARL2, SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, OVOL1, KCNK4, UBXN1, TRMT112, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PLCB3, POLR2G, WDR74, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, PYGM, MAP4K2, RARRES3, RELA, DPF2, ROM1, KLC2, TUT1, SIPA1, SLC3A2, C11orf95, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, METTL12, SF1, ZFPL1, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, MUS81, FOSL1, INTS5, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, FRMD8, RNASEH2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 EIF1AD, NUDT22, SYVN1, LGALS12, BANF1, GAL3ST3, RPS6KA4, SART1, AP5B1, FIBP, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, RIN1) 0.266039377861241 213 0.0459124242904396 0.704683974196632 11687 0.180933090910119 2 2 0 -6.73857184447152 LTS-006 NA NA NA NA LTS-006 chr11 66109034 66115126 6093 * c(B4GAT1, BRMS1) NA 0 NA 0.690109697135688 53 0.129079826450599 2 NA NA -5.76454162195541 LTS-006 chr11 66115127 66129962 14836 * B4GAT1 NA 0 NA 1.477 1 NA NA NA NA NA LTS-006 chr11 66129963 66139187 9225 * SLC29A2 0.111 1 NA 1.03204455530265 77 0.210947143136709 4 4 0 -5.76441016236293 LTS-006 chr11 66139188 70266246 4127059 * c(LOC100130987, MIR548K, RBM14-RBM4, MIR4691, DPP3, CDK2AP2, TCIRG1, RBM14, CHKA, MRGPRD, MRGPRF, CPT1A, GRK2, CTTN, MRPL21, TPCN2, ORAOV1, ALDH3B1, ALDH3B2, FGF3, FGF4, KDM2A, CLCF1, PELI3, ZDHHC24, C11orf86, NUDT8, MYEOV, NPAS4, GSTP1, RHOD, SLC29A2, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, GPR152, DOC2GP, LRP5, NDUFV1, NDUFS8, PC, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, ANO1, CCDC87, PPP6R3, CABP4, NA NA NA NA NA NA NA NA NA LTS-006 CORO1B, CARNS1, POLD4, PTPRCAP, BBS1, RAD9A, RBM4, CCND1, RPS6KB2, FAM86C2P, MRPL11, SPTBN2, LRFN4, C11orf80, TMEM134, UNC93B1, RBM4B, PPFIA1, CTSF, FADD, ACTN3, AIP, SYT12, ACY3, PITPNM1, TESMIN, FGF19, CCS, RCE1) 0.195625514790222 61 0.0349658850131682 1.03421406976298 5625 0.239252703400005 4 4 0 -6.78817947120873 LTS-006 NA NA NA NA LTS-006 chr11 70266247 70279821 13575 * CTTN NA 0 NA 1.00572503664457 47 0.191348227874792 4 NA NA -5.76456404962544 LTS-006 chr11 70279822 70281067 1246 * CTTN NA 0 NA 1.486 1 NA NA NA NA NA LTS-006 chr11 70281068 70281845 778 * CTTN 0.334 1 NA 1.55499401623729 13 0.381212202834253 7 7 0 -5.76441174811286 LTS-006 chr11 70281846 72403894 2122049 * c(LOC100129216, LOC100133315, MIR3165, MIR3664, IL18BP, SHANK2-AS1, ARAP1, DHCR7, CTTN, SHANK2-AS3, LRTOMT, SHANK2, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, PDE2A, LAMTOR1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, CLPB) 0.32907079681235 25 0.11925850074523 1.40193597717714 2048 0.359330251094243 7 5 2 -6.80153649301388 LTS-006 chr11 72403895 72525353 121459 * c(MIR4692, STARD10, ARAP1) NA 0 NA 1.39694278038284 208 0.300226283381074 6 NA NA -5.7650614101938 LTS-006 chr11 72525354 72529358 4005 * ATG16L2 0.489 1 NA 0.940301077801536 25 0.215633276652747 3 3 0 -5.76472327891145 LTS-006 chr11 72529359 75298917 2769559 * c(KCNE3, TPBGL, MIR4696, POLD3, NEU3, SLCO2B1, SNORD15B, XRRA1, FAM168A, RNF169, CHRDL2, C2CD3, P4HA3, PGM2L1, KLHL35, OR2AT4, DNAJB13, LIPT2, ARRB1, MAP6, MIR326, P2RY2, P2RY6, COA4, PPME1, MRPL48, PLEKHB1, RAB6A, SNORD15A, RPS3, UCP2, UCP3, PAAF1, GDPD5, RELT, SERPINH1, ATG16L2, SPCS2, ARHGEF17, FCHSD2) 0.451896069601316 81 0.0338144629002823 1.0152783621164 3350 0.271224852006625 4 2 2 -6.94059011314015 LTS-006 chr11 75298918 75299190 273 * MAP6 NA 0 NA 0.854991392576209 6 0.279292976400529 3 NA NA -5.76441075760281 LTS-006 chr11 75299191 75314787 15597 * MAP6 0.078 1 NA 1.37513867590499 21 0.30665615924028 6 6 0 -5.76442606318315 LTS-006 chr11 75314788 78413412 3098625 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, B3GNT6, GDPD4, TSKU, TENM4, LRRC32, AQP11, LOC283214, KCTD21, AAMDC, GUCY2EP, MAP6, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, THAP12, EMSY, USP35, KCTD14, THRSP, CAPN5, UVRAG, WNT11, ALG8, NARS2, MOGAT2, DGAT2, INTS4, GAB2) 0.368013675093375 68 0.079286225355781 1.34983179656041 3253 0.402255408972396 6 4 2 -6.74266147918871 LTS-006 chr11 78413413 81601914 3188502 * c(MIR708, MIR4300, MIR5579, TENM4) NA 0 NA 1.12061032076975 157 0.217797309192645 5 NA NA -5.92733830618328 LTS-006 chr11 82443067 83810110 1367044 * c(SNORA70E, RAB30-AS1, DLG2, DDIAS, FAM181B, RAB30, ANKRD42, PCF11, PRCP, CCDC90B) 0.372297109495327 14 0.159081843612126 1.7994994500257 1173 0.529118893937429 9 6 3 -6.7357658047776 LTS-006 chr11 83810111 83874452 64342 * DLG2 NA 0 NA 1.574 1 NA NA NA NA NA LTS-006 chr11 83874453 89956521 6082069 * c(NAALAD2, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, TRIM64, DLG2, FOLH1B, CCDC83, CCDC89, RAB38, CHORDC1, GRM5, TRIM77, NOX4, HIKESHI, SYTL2, TMEM126B, TRIM49, CREBZF, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.321452874758611 66 0.0660022126492141 1.53232717735949 2552 0.451230263867496 7 5 2 -6.77644998008163 LTS-006 chr11 90602247 92899230 2296984 * c(SLC36A4, FAT3, MTNR1B) 0.349959189686796 6 0.0441425720440786 1.71205006295783 563 0.336770514490544 9 6 3 -6.88245969923948 LTS-006 chr11 92899231 92901095 1865 * SLC36A4 NA 0 NA 1.211 1 NA NA NA NA NA LTS-006 chr11 92901096 99690508 6789413 * c(MIR1304, MIR1260B, JRKL-AS1, GPR83, SLC36A4, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, CWC15, CNTN5, ANKRD49, KDM4D, SMCO4, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CCDC82, MAML2, CEP295, JRKL, MTMR2, MED17, CEP57) 0.386658267731312 70 0.051960320902013 1.30171991255567 2993 0.326310020284625 6 4 2 -6.81762575585476 LTS-006 chr11 99690509 100832580 1142072 * c(ARHGAP42, CNTN5) 0.380744070178028 7 0.175784364654946 1.07455799397797 278 0.315514371543508 4 3 1 -6.77309605116889 LTS-006 chr11 100832581 100833078 498 * ARHGAP42 NA 0 NA 1.997 1 NA NA NA NA NA LTS-006 chr11 100833079 107977059 7143981 * c(WTAPP1, MIR3920, CASP12, MIR4693, LOC101054525, YAP1, CARD16, TMEM123, ARHGAP42, KBTBD3, CWF19L2, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, PGR, SLC35F2, RAB39A, ELMOD1, CEP126, CARD18, AASDHPPT, MMP27, LOC643733, LOC643923, SLN, TRPC6, DYNC2H1, PDGFD, CUL5, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, C11orf70, ALKBH8, MMP20) 0.37781805261506 118 0.0748699219655254 1.30896210390419 4091 0.353459728116833 6 4 2 -6.77880927227635 LTS-006 chr11 107977060 108164042 186983 * c(ACAT1, ATM, NPAT, CUL5) 0 1 NA 1.35778447483275 441 0.358081844685402 6 6 0 -5.76441013669347 LTS-006 chr11 108164043 109297406 1133364 * c(KDELC2, C11orf65, DDX10, EXPH5, C11orf87, ATM) 0.325 2 0 1.32131885593997 843 0.283963362363721 0 0 0 -Inf LTS-006 chr11 109297407 111848531 2551125 * c(LOC100132078, HSPB2-C11orf52, MIR4491, COLCA2, CRYAB, LAYN, FDX1, SIK2, HSPB2, C11orf53, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, POU2AF1, BTG4, PPP2R1B, ARHGAP20, RDX, C11orf1, ALG9, DIXDC1, ZC3H12C, FDXACB1) 0.179864139201524 31 0.0571424366343975 0.985909787313029 1900 0.2624468211077 4 4 0 -6.78491906053925 LTS-006 chr11 111848532 111895799 47268 * c(DLAT, DIXDC1) NA 0 NA 1.03181465929173 90 0.1998762479183 4 NA NA -5.76441047735635 LTS-006 chr11 111895800 111896324 525 * DLAT 0.306 1 NA 0.705141797578537 7 0.124109782431677 2 2 0 -5.76441031033489 LTS-006 chr11 111896325 119054488 7158164 * c(LOC100131626, NCAM1-AS1, BACE1-AS, MIR4301, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, PIH1D2, NXPE1, NXPE2, JAML, TTC36, DDX6, DLAT, DPAGT1, DRD2, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, H2AFX, HMBS, APOA1, HTR3A, APOA4, CCDC84, APOC3, PLET1, IL10RA, IL18, ARCN1, KMT2A, NA NA NA NA NA NA NA NA NA LTS-006 NCAM1, NNMT, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, NXPE4, TTC12, C11orf57, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, USP28, PTS, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, CLDN25, RPL23AP64, TAGLN, UPK2, ZBTB16, NLRX1, TMPRSS5, BCO2, TMPRSS13, BUD13, TMEM25, ZPR1, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, UBE4A, C2CD2L) 0.268636235007968 168 0.0756237167527518 0.713072393865134 7722 0.255281375381901 2 2 0 -6.73771379666251 LTS-006 NA NA NA NA LTS-006 chr11 119054489 119060654 6166 * c(NLRX1, PDZD3) NA 0 NA 0.767099361939349 80 0.112041385182757 2 NA NA -5.76635635795435 LTS-006 chr11 119060655 119063908 3254 * c(CCDC153, PDZD3) 0.436 1 NA 1.02790078475333 25 0.29178237895162 4 4 0 -5.76441059790508 LTS-006 chr11 119063909 122928622 3864714 * c(USP2-AS1, TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, CCDC153, GRIK4, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, CRTAM, NECTIN1, SC5D, LOC649133, SORL1, TECTA, THY1, RNF26, C11orf63, MFRP, UBASH3B, CBL, USP2) 0.443310883102741 61 0.0913845175871975 1.0474969514496 3113 0.508504534697844 4 2 2 -6.74408922093444 LTS-006 chr11 122928623 122929000 378 * HSPA8 NA 0 NA 1.04936854689202 3 0.0640858798800486 4 NA NA -5.76442454388877 LTS-006 chr11 122929001 122929159 159 * HSPA8 NA 0 NA 0.858 1 NA NA NA NA NA LTS-006 chr11 122929160 122931268 2109 * HSPA8 0.288 1 NA 0.667995208474704 29 0.0922482194416119 2 2 0 -5.76489387042329 LTS-006 chr11 122931269 130786345 7855077 * c(PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, HEPACAM, FLI1, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, DCPS, ZBTB44, DDX25, HSPA8, APLP2, TMEM225, OR8D4, STT3A, KCNJ1, KCNJ5, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, NA NA NA NA NA NA NA NA NA LTS-006 PATE4, ST3GAL4-AS1, SNX19, VWA5A, LINC00167, NFRKB, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, BARX2, ESAM, EI24, FEZ1, ARHGAP32) 0.267815307048333 139 0.0535983607671567 0.732049683051245 6752 0.237275425416969 2 2 0 -6.83215566299413 LTS-006 NA NA NA NA LTS-006 chr11 130786346 132016495 1230150 * c(SNX19, NTM) NA 0 NA 0.70625309431152 47 0.141032321237625 2 NA NA -5.76447867339187 LTS-006 chr11 132016496 132081910 65415 * NTM NA 0 NA 1.276 1 NA NA NA NA NA LTS-006 chr11 132081911 132177563 95653 * NTM 0.155 1 NA 1.44718550155675 5 0.875217801464298 7 7 0 -5.76459314968505 LTS-006 chr11 132177564 134856626 2679063 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, LOC283177, THYN1, OPCML, NTM, JAM3, GLB1L2) 0.137063190162275 29 0.0499676003400588 1.37091550201504 1325 0.430142836082844 6 6 0 -6.73696930388821 LTS-006 chr11 134856627 134856681 55 * character(0) NA 0 NA 1.19286600470536 3 0.0808290376865477 5 NA NA -5.76441015345354 LTS-006 chr12 90923 90953 31 * LOC100288778 0.321 1 NA 1.26 1 NA NA NA NA NA LTS-006 chr12 90954 7654076 7563123 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NA NA NA NA NA NA NA NA NA LTS-006 NINJ2, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, FAM138D, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 DYRK4, CCND2, CD4, CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.449133998370257 187 0.0712049063788944 0.998513599930558 9296 0.409579825775067 4 2 2 -6.79784204275513 LTS-006 NA NA NA NA LTS-006 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.76 1 NA NA NA NA NA LTS-006 chr12 7655021 9590665 1935645 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.419460721655724 61 0.0671867961266981 0.92312998104506 2215 0.284798818224762 3 2 1 -6.83045193431969 LTS-006 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.071 1 NA NA NA NA NA LTS-006 chr12 9633155 9717889 84735 * character(0) NA 0 NA 0.0768102346958684 94 0.0938090059866832 0 NA NA -11.1162996201572 LTS-006 chr12 9717890 10573116 855227 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.435743580696954 30 0.120207488243807 0.886038045638976 1098 0.311792104160405 3 2 1 -6.78588363750201 LTS-006 chr12 10573117 10602459 29343 * c(KLRC1, KLRC2, KLRC3) 0.455589392518288 4 0.0179141471096635 1.33102311099349 118 0.461449401084207 6 3 3 -7.62727350940013 LTS-006 chr12 10602460 10603088 629 * KLRC1 NA 0 NA 0.744 1 NA NA NA NA NA LTS-006 chr12 10603089 11034918 431830 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R10, MAGOHB, STYK1, PRB4, PRH1, YBX3) 0.417147387443527 16 0.118203778845405 0.854169896055078 413 0.288816764552688 3 2 1 -6.74590164272566 LTS-006 chr12 11034919 11150319 115401 * c(PRH1-PRR4, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH1, PRH2) 0.454984906202793 10 0.0290623850057462 0.963806804727768 178 0.274660029000403 4 2 2 -7.09145019146709 LTS-006 chr12 11150320 11174213 23894 * c(PRH1-PRR4, TAS2R20, PRB4) 0.297 1 NA 0.901591901645993 7 0.307635297374141 3 3 0 -5.76460443244468 LTS-006 chr12 11174214 11286820 112607 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.27480017256482 64 0.0867209865827695 1.08737367704256 185 0.639749556609568 6 5 1 -6.75754728633294 LTS-006 chr12 11286821 11338589 51769 * c(SMIM10L1, PRH1-PRR4, TAS2R30, PRB4) 0.475 1 NA 0.886779974632544 11 0.0759821749431464 3 3 0 -5.76640313361835 LTS-006 chr12 11338590 34175508 22836919 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-006 SLCO1B7, SMCO2, OVCH1, SYT10, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, ALG10, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.450711475375209 231 0.0686249259599983 0.9708757644751 11725 0.844336345059723 4 2 2 -6.84937424355389 LTS-006 NA NA NA NA LTS-006 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 1.07063564807791 57 0.260460820417258 4 NA NA -5.76449331853217 LTS-006 chr12 38710341 38710459 119 * character(0) 0.48 1 NA 0.485965120470961 5 0.262584843431604 1 1 0 -5.76442343964934 LTS-006 chr12 38710460 40158551 1448092 * c(SLC2A13, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.442046981810797 12 0.0353073088836584 0.940149390056503 750 0.218417149588889 4 2 2 -6.9372585552144 LTS-006 chr12 40158552 40618804 460253 * c(SLC2A13, C12orf40) NA 0 NA 0.683680530891161 86 0.117712704701545 2 NA NA -5.78714877200502 LTS-006 chr12 40618805 41463689 844885 * c(LRRK2, CNTN1) 0.414069431229511 4 0.0229401394939089 1.04286133378411 1058 0.250663700420397 5 3 2 -6.89918030569803 LTS-006 chr12 41463690 41464472 783 * CNTN1 0 1 NA 1.09655780451031 17 0.947275365269814 4 4 0 -5.76441202722116 LTS-006 chr12 41464473 41831662 367190 * c(CNTN1, PDZRN4) 0.489 1 NA 0.927673494721427 60 0.209548432302 3 3 0 -5.78510393799574 LTS-006 chr12 41831663 41831713 51 * PDZRN4 NA 0 NA 1.27 1 NA NA NA NA NA LTS-006 chr12 41831714 42852564 1020851 * c(YAF2, PRICKLE1, GXYLT1, PDZRN4, PPHLN1, ZCRB1) 0.232655648302061 8 0.148551818760804 1.26920500269159 504 0.318363257732263 6 5 1 -6.78138030420299 LTS-006 chr12 42852565 43816842 964278 * c(PRICKLE1, PPHLN1, ADAMTS20) 0.414 1 NA 1.23063136480573 153 0.223151223636016 5 5 0 -5.77431477855086 LTS-006 chr12 43816843 45269284 1452442 * c(NELL2, IRAK4, TWF1, ADAMTS20, PUS7L, TMEM117) 0.369323360011449 12 0.133362458940084 1.26775890500344 634 0.362063766204259 6 4 2 -6.76665322226747 LTS-006 chr12 45269285 45269294 10 * NELL2 NA 0 NA 1.835 1 NA NA NA NA NA LTS-006 chr12 45269295 45834277 564983 * c(ANO6, DBX2, NELL2, PLEKHA8P1, RNY5, RACGAP1P) 0.317358743704268 12 0.0286826946031395 1.64846598538916 347 0.484031200246307 8 6 2 -6.81653079802474 LTS-006 chr12 45834278 46121065 286788 * LINC00938 NA 0 NA 0.888 1 NA NA NA NA NA LTS-006 chr12 46121066 46758494 637429 * c(ARID2, LINC00938, SLC38A2, SLC38A1, SCAF11) 0.383661728400638 13 0.168352385314333 0.999676574200405 672 0.244886979676895 4 3 1 -6.77635647761579 LTS-006 chr12 46758495 46759017 523 * SLC38A2 0.453 1 NA 1.0038954324256 7 0.1787296441956 4 4 0 -5.76441789076324 LTS-006 chr12 46759018 52145265 5386248 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, ASIC1, ATF1, SLC11A2, DHH, NA NA NA NA NA NA NA NA NA LTS-006 FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, DDX23, SLC4A8, DAZAP2) 0.450089551311904 184 0.087884107031419 1.01702952725363 8607 0.986784786648198 4 2 2 -6.75914653790307 LTS-006 NA NA NA NA LTS-006 chr12 52145266 52174569 29304 * SCN8A NA 0 NA 1.44212691357064 53 0.314404787020803 7 NA NA -5.76490831988857 LTS-006 chr12 52174570 52180358 5789 * SCN8A NA 0 NA 0.938 1 NA NA NA NA NA LTS-006 chr12 52180359 52685387 505029 * c(KRT80, GRASP, C12orf80, LINC00592, NR4A1, ANKRD33, KRT7, KRT81, KRT86, FIGNL2, ATG101, SCN8A, ACVR1B, ACVRL1) 0.458899413372545 28 0.0353296456596137 1.08959390692014 867 0.266717903696508 4 2 2 -7.07478809459522 LTS-006 chr12 52685388 52695628 10241 * c(KRT81, KRT86) NA 0 NA 1.499 1 NA NA NA NA NA LTS-006 chr12 52695629 52779562 83934 * c(KRT81, KRT83, KRT84, KRT85, KRT86) 0.35116576348065 7 0.021855586623714 1.57010850418408 213 0.412904848212068 15 10 5 -6.8507990152637 LTS-006 chr12 52779563 56115883 3336321 * c(HOTAIR, LOC100240734, LOC100240735, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, DCD, MUCL1, OR2AP1, OR10P1, SP7, GTSF1, OR10A7, KRT74, KRT72, KRT78, METTL7B, EIF4B, COPZ1, TNS2, CBX5, SMUG1, OR6C74, OR6C3, ZNF385A, BLOC1S1, AMHR2, LOC283335, ZNF740, OR6C6, KRT6C, NCKAP1L, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, OR6C2, OR6C4, IGFBP6, NA NA NA NA NA NA NA NA NA LTS-006 ITGA5, ITGA7, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT8, KRT18, KRT82, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, MIR196A2, FLJ12825, OR9K2, MIR148B, NFE2, PCBP2, KRT76, CSAD, PDE1B, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, CALCOCO1, NEUROD4, RARG, RDH5, C12orf10, GLYCAM1, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, LACRT, KRT75, ESPL1, TESPA1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ) 0.448407166543076 140 0.0660042864315502 1.03935247265345 6050 0.877473889489935 4 2 2 -6.77005987794126 LTS-006 NA NA NA NA LTS-006 chr12 56115884 56154473 38590 * c(BLOC1S1-RDH5, GDF11, RDH5, SARNP, DNAJC14, CD63) 0 1 NA 1.07438363628664 189 0.567354206737101 4 4 0 -5.76452368972806 LTS-006 chr12 56154474 56677478 523005 * c(CDK2, RNF41, MYL6B, CS, DGKA, ERBB3, ESYT1, ANKRD52, SLC39A5, ORMDL2, MMP19, MYL6, PA2G4, RAB5B, RPL41, RPS26, IKZF4, PMEL, SMARCC2, SUOX, NABP2, PYM1, SARNP, ZC3H10, DNAJC14, COQ10A) 0.25897064406844 13 0.237884641295109 1.0403431623178 2164 0.297416159270945 4 4 0 -6.79071210456096 LTS-006 chr12 56677479 56703722 26244 * CS 0.478 1 NA 0.936787378175284 37 0.182589946570419 3 3 0 -5.76700294406083 LTS-006 chr12 56703723 58216989 1513267 * c(AGAP2-AS1, MIR1228, TSFM, CTDSP2, CDK4, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, CYP27B1, DDIT3, DTX3, R3HDM2, NEMP1, STAC3, B4GALNT1, METTL21B, SNORD59A, GLS2, GLI1, SPRYD4, APOF, INHBC, KIF5A, LRP1, MARS, METTL1, MIP, MYO1A, NAB2, NACA, ATP5B, IL23A, PRIM1, NDUFA4L2, RBMS2, TSPAN31, ARHGAP9, SHMT2, SLC26A10, STAT2, STAT6, TAC3, SNORD59B, PIP4K2C, NA NA NA NA NA NA NA NA NA LTS-006 INHBE, RDH16, HSD17B6, TIMELESS, MARCH9, ZBTB39, PAN2) 0.455043297671869 70 0.0660729582946411 1.02969053698505 5137 0.222426379089092 4 2 2 -6.80537107011457 LTS-006 NA NA NA NA LTS-006 chr12 58216990 58216996 7 * CTDSP2 0.276 1 NA 1.495 1 NA NA NA NA NA LTS-006 chr12 58216997 58217763 767 * CTDSP2 0.265740727262678 13 0.123932208516157 1.06359274424397 28 0.167036490484682 6 5 1 -6.7351052661972 LTS-006 chr12 58217764 58217780 17 * CTDSP2 0.368 1 NA 0.895 1 NA NA NA NA NA LTS-006 chr12 58217781 68646652 10428872 * c(MIR548Z, LOC100506844, CTDSP2, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, MIR26A2, IL22, TMBIM4, AVPR1A, IL26, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, ATP23, SLC16A7, HELB, USP15) 0.442519031696617 101 0.0744604699431747 1.00751728327332 4381 0.337045106118349 4 2 2 -6.77796420813181 LTS-006 chr12 68646653 69202366 555714 * c(LOC100130075, SNORA70G, LOC100507250, MDM2, IL22, SLC35E3, MDM1, NUP107, RAP1B) 0.44838269202542 4 0.0618061485614498 0.867483279349033 433 0.18648963679915 4 2 2 -7.05256344398424 LTS-006 chr12 69202367 69202927 561 * MDM2 NA 0 NA 1.037 1 NA NA NA NA NA LTS-006 chr12 69202928 75437335 6234408 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, CPM, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, MDM2, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, LGR5) 0.425225484651183 61 0.136378813876338 1.01409712785177 3249 0.27305699434711 4 2 2 -6.75074133357278 LTS-006 chr12 75437336 75437438 103 * KCNC2 NA 0 NA 0.831 1 NA NA NA NA NA LTS-006 chr12 75437439 77426968 1989530 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2) 0.464499718541057 22 0.0295242581309305 0.923411213368016 1409 0.237688704902895 4 2 2 -7.63725193245112 LTS-006 chr12 77426969 77427665 697 * E2F7 NA 0 NA 0.976 1 NA NA NA NA NA LTS-006 chr12 77427666 92814969 15387304 * c(MIR1252, POC1B-GALNT4, MIR4699, MIR548AL, KERA, TSPAN19, E2F7, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, MGAT4C, POC1B, OTOGL, CCDC59, LINC00936, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, MYF5, MYF6, PPP1R12A, ATP2B1, NTS, PAWR, SLC6A15, CLLU1OS, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, GALNT4, LIN7A, NAV3, C12orf29, RASSF9) 0.445094763021351 50 0.0647053730854127 1.02583113227219 4457 0.324458769920118 4 2 2 -6.76127688345327 LTS-006 chr12 92814970 92816337 1368 * c(CLLU1OS, CLLU1) NA 0 NA 0.938 1 NA NA NA NA NA LTS-006 chr12 92816338 96672743 3856406 * c(PGAM1P5, MIR3685, MIR5700, PLXNC1, METAP2, NUDT4, CCDC38, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ELK3, MRPL42, HAL, C12orf74, LTA4H, PLEKHG7, MIR331, CEP83, CDK17, VEZT, FGD6, NDUFA12, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, SNRPF, NR2C1, UBE2N, USP44, EEA1, CRADD, SOCS2) 0.452509737884233 83 0.0613723527114899 0.970023914724781 2933 0.256290126214455 4 2 2 -6.93372496971719 LTS-006 chr12 96672744 97017694 344951 * CDK17 NA 0 NA 0.882971414132425 237 0.192211426829614 3 NA NA -5.76566127268365 LTS-006 chr12 97017695 97019494 1800 * character(0) NA 0 NA 0.78 1 NA NA NA NA NA LTS-006 chr12 97019495 97639131 619637 * NEDD1 0.327 1 NA 0.659138738866533 315 0.18624205639141 2 2 0 -5.81706571080969 LTS-006 chr12 97639132 109826667 12187536 * c(TMPO-AS1, USP30-AS1, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3652, MIR3922, LOC100505978, CKAP4, PRDM4, PWP1, FICD, DEPDC4, C12orf45, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, ALDH1L2, SLC5A8, DAO, FAM71C, RMST, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, MYO1H, HCFC2, APAF1, ACACB, TMEM119, IGF1, C12orf42, C12orf75, ARL1, NA NA NA NA NA NA NA NA NA LTS-006 MIR135A2, ASCL1, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, NT5DC3, SLC25A3, PMCH, SSH1, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, GOLGA2P5, SCYL2, POLR3B, ANKS1B, CHPT1, RFX4, SELPLG, LOC643711, LOC643770, ACTR6, SNORA53, TDG, TMPO, HSP90B1, C12orf73, LOC728739, TXNRD1, UNG, NUP37, GNPTAB, MTERF2, GLT8D2, SLC41A2, USP30, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.267357317554625 197 0.0740544777786158 0.699171133389402 9167 0.432013377123749 2 2 0 -6.73892745622777 LTS-006 NA NA NA NA LTS-006 chr12 109826668 109831100 4433 * MYO1H NA 0 NA 1.09 1 NA NA NA NA NA LTS-006 chr12 109831101 110318235 487135 * c(MIR4497, MYO1H, MMAB, MVK, GLTP, TRPV4, KCTD10, FAM222A, FAM222A-AS1, UBE3B) 0.252006446296617 26 0.0442257843344807 0.760433141582137 1034 1.21809739861683 6 5 1 -6.82031758364973 LTS-006 chr12 110318236 113317003 2998768 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.247372046544921 5 0.145750814749009 0.67211113863634 3971 0.178653323153678 2 2 0 -6.89014237711641 LTS-006 chr12 113317004 113319562 2559 * RPH3A NA 0 NA 0.782 1 NA NA NA NA NA LTS-006 chr12 113319563 120078577 6759015 * c(LINC00173, MIR4472-2, SDS, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, WSB2, RFC5, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, RBM19) 0.266614431879297 92 0.0583791041735734 0.72887125867665 4252 0.205809477401975 2 2 0 -6.82094778003297 LTS-006 chr12 120078578 120105707 27130 * TMEM233 0.199 1 NA 0.693919446950854 21 0.137056783505093 2 2 0 -5.76472217348109 LTS-006 chr12 120105708 120105862 155 * PRKAB1 0.174 1 NA 0.735194038330824 5 0.120835425269248 2 2 0 -5.76441966229218 LTS-006 chr12 120105863 124399113 4293251 * c(MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4498, MIR4700, MPHOSPH9, CAMKK2, TMED2, GCN1, RAB35, SNRNP35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, NA NA NA NA NA NA NA NA NA LTS-006 ZCCHC8, PRKAB1, DIABLO, PSMD9, PITPNM2, DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.190706300729172 143 0.0613997169681613 0.987215007356887 7814 0.29102841539435 4 4 0 -6.79887706730004 LTS-006 NA NA NA NA LTS-006 chr12 124399114 133419709 9020596 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-006 CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.185425844226507 144 0.0602982679592135 1.05470630963136 5157 0.266686162740347 4 4 0 -6.76722530169606 LTS-006 NA NA NA NA LTS-006 chr12 133419710 133420534 825 * CHFR NA 0 NA 0.13 1 NA NA NA NA NA LTS-006 chr12 133420535 133812039 391505 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.190693505116183 35 0.0384170611608344 0.947020492199626 983 0.263938214483347 4 4 0 -6.77133408261194 LTS-006 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.601421804367208 11 0.0908144962397123 1 NA NA -5.76488957115136 LTS-006 chr13 19271620 20067011 795392 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C, TPTE2) 0.121 1 NA 0.639473311719205 129 0.181815186360433 2 2 0 -5.90731296022601 LTS-006 chr13 20067012 24463513 4396502 * c(SACS-AS1, LINC00327, MIR4499, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.27694694633603 52 0.056704640811778 0.689945974385139 2292 0.177697452947949 2 2 0 -6.79258194456871 LTS-006 chr13 24463514 24463556 43 * c(MIPEP, C1QTNF9B-AS1) NA 0 NA 1.156 1 NA NA NA NA NA LTS-006 chr13 24463557 24470992 7436 * c(C1QTNF9B, MIPEP, C1QTNF9B-AS1) NA 0 NA 0.390467658070294 39 0.169278731088464 0 NA NA -5.76448684817899 LTS-006 chr13 24470993 24471048 56 * C1QTNF9B 0.433 1 NA 1.463 1 NA NA NA NA NA LTS-006 chr13 24471049 38211764 13740716 * c(LINC00426, PAN3-AS1, MIR548F5, MIR2276, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, SPATA13-AS1, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, NA NA NA NA NA NA NA NA NA LTS-006 GTF3A, ALG5, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, SERTM1, LINC00547, SMAD9, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, SOHLH2, SUPT20H, CENPJ, RNF17, RFC3, RFXAP, RNF6, RPL21, SNORA27, TPTE2P1, URAD, ZAR1L, SLC7A1, BRCA2, TRPC4, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.287623771025169 168 0.0527818057582786 0.696487769230186 7898 0.193514043993638 2 2 0 -6.85000578359225 LTS-006 NA NA NA NA LTS-006 chr13 38211765 38213137 1373 * TRPC4 NA 0 NA 0.735 1 NA NA NA NA NA LTS-006 chr13 38213138 41239962 3026825 * c(MIR4305, LINC00332, LINC00366, LINC00571, LHFP, STOML3, FOXO1, FREM2, NHLRC3, LINC00548, UFM1, COG6, LINC00598, TRPC4, PROSER1) 0.266881332684921 24 0.0457072442170062 0.748248384315165 1072 0.179369181921977 2 2 0 -6.91026365128417 LTS-006 chr13 41239963 41240056 94 * FOXO1 NA 0 NA 0.429 1 NA NA NA NA NA LTS-006 chr13 41240057 80095030 38854974 * c(LINC00462, TPT1-AS1, MIR1297, MIR759, MIR320D1, MIR3169, MIR3665, MIR3613, RBM26-AS1, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, LINC00331, LINC00381, LINC00446, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, RNASEH2B-AS1, SMIM2-IT1, LINC00348, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, PIBF1, NA NA NA NA NA NA NA NA NA LTS-006 OLFM4, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, KLF12, KCTD12, ARL11, WDFY2, CLN5, LINC00284, SLAIN1, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DACH1, DGKH, CCDC122, COMMD6, EDNRB, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, DIS3, MYCBP2, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, FBXL3, INTS6, CKAP2, NUFIP1, PCDH17, OR7E156P, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, LINC00550, LINC00347, NEK5, KPNA3, KCTD4, SERP2, LCP1, LMO7, MIR16-1, ALG11, MZT1, NEK3, PCDH8, PCDH9, VPS36, PHF11, ATP7B, POU4F1, NDFIP2, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, KLHL1, RB1, ATXN8OS, RBM26, TSC22D1-AS1, LINC00371, SERPINE3, CTAGE11P, PCDH20, SNORA31, KLF5, BTF3P11, MIR621, TPT1, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 RNF219, NAA16, RNASEH2B, DHRS12, BORA, RUBCNL, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SCEL, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C, TBC1D4) 0.269964301489713 180 0.0680008042089225 0.684826933558573 11018 0.373825576879313 2 2 0 -6.90085821462785 LTS-006 NA NA NA NA LTS-006 chr13 80095031 80911736 816706 * c(SPRY2, NDFIP2) NA 0 NA 0.712410694346117 54 0.210956814131167 2 NA NA -5.76500037440821 LTS-006 chr13 80911737 86367042 5455306 * c(LINC00333, LINC00351, SPRY2, SLITRK1, SLITRK6) NA 0 NA 1.00076485236052 110 0.215580375185539 4 NA NA -5.83240896454687 LTS-006 chr13 86367043 87045827 678785 * SLITRK6 0.185 1 NA 1.37507865183106 77 0.203483842846023 6 6 0 -5.76597336774874 LTS-006 chr13 87045828 93519350 6473523 * c(MIR4500, GPC5-AS1, LINC00353, LINC00379, LINC00433, LINC00559, LINC00410, GPC5, SLITRK5, MIR19B1, MIR17HG, MIR4500HG, MIR622) 0.16699885079438 2 0.021920310216783 1.33031644099363 198 0.395333257978464 5 5 0 -7.06909839529015 LTS-006 chr13 93519351 113338694 19819344 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, BIVM-ERCC5, MIR2681, MIR548AN, MIR4705, GPC6, MIR548AS, GPC6-AS2, LINC00443, CLDN10-AS1, COL4A2-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, ABCC4, TUBGCP3, TNFSF13B, SOX21, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, RNF113B, LINC00343, GPR180, DCT, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, MYO16, DOCK9, TGDS, NALCN, HS6ST3, DAOA, OXGR1, NA NA NA NA NA NA NA NA NA LTS-006 DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, GPR18, UBAC2, ING1, IPO5, LIG4, ATP11AUN, PCCA, BIVM, ARGLU1, ANKRD10, RAB20, NAXD, UGGT2, DNAJC3, RAP2A, CCDC168, SLC10A2, SLC15A1, SOX1, MIR623, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, CARS2, STK24, TMTC4, ABHD13, ZIC5, IRS2, GGACT, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2) 0.115325719323818 151 0.0384223375979399 1.5817888883976 7170 0.479447223109324 7 7 0 -6.85562841479228 LTS-006 NA NA NA NA LTS-006 chr13 113338695 114839373 1500679 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, ADPRHL1, F7, F10, RASA3, ATP11A, MCF2L, GAS6, TMEM255B, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, TFDP1, GRTP1, CUL4A, PROZ) 0.107418889868955 45 0.0264983704473244 1.67430883276528 1788 0.50666482667986 8 8 0 -6.76457762202287 LTS-006 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.867 1 NA NA NA NA NA LTS-006 chr13 114897818 115047700 149883 * c(RASA3, UPF3A, CDC16) 0.0685530767047333 2 0.0862670273047588 1.33367001736815 114 0.310879528183051 9 9 0 -6.92664343710117 LTS-006 chr13 115047701 115092817 45117 * c(CHAMP1, UPF3A) NA 0 NA 1.28035235132831 111 0.198029298207116 6 NA NA -5.76679312333187 LTS-006 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.298 1 NA 1.40850559042796 5 0.638423605453307 6 6 0 -5.76592531931952 LTS-006 chr14 20201562 20404749 203188 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.31681708636241 14 0.0376914162262823 1.56349108812681 202 0.29241201933197 8 6 2 -6.78433223629686 LTS-006 chr14 20404750 20404767 18 * OR4K1 0.37 1 NA 1.027 1 NA NA NA NA NA LTS-006 chr14 20404768 20482471 77704 * c(OR4K14, OR4K1, OR4K15) 0.44 1 NA 1.15075748837259 55 1.74485890971586 5 5 0 -5.76443211395957 LTS-006 chr14 20482472 20850171 367700 * c(SNORD126, PARP2, OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, CCNB1IP1, TEP1, RPPH1, TTC5) 0.454661952774809 24 0.0355670422266685 1.04807853311144 646 0.555187349067735 4 2 2 -6.967703156598 LTS-006 chr14 20850172 20863679 13508 * TEP1 0 1 NA 1.11415409701309 94 0.512439004522696 5 5 0 -5.76456226607728 LTS-006 chr14 20863680 20898961 35282 * c(KLHL33, TEP1) NA 0 NA 1.03748526103475 117 0.184265834009617 4 NA NA -5.76442441465925 LTS-006 chr14 20898962 20903122 4161 * KLHL33 NA 0 NA 0.69 1 NA NA NA NA NA LTS-006 chr14 20903123 21547182 644060 * c(EDDM3A, RNASE11, TPPP2, RNASE8, KLHL33, ANG, SLC39A2, APEX1, RNASE10, OR6S1, RNASE9, RNASE13, PNP, RNASE12, OSGEP, ARHGEF40, NDRG2, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, RNASE7, TMEM55B) 0.260277012384602 20 0.0385129848233034 0.726400170955856 994 0.16850792788822 2 2 0 -6.78093873325466 LTS-006 chr14 21547183 21548855 1673 * ARHGEF40 NA 0 NA 0.944 1 NA NA NA NA NA LTS-006 chr14 21548856 22573752 1024897 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, ARHGEF40, METTL3, RPGRIP1, CHD8, SALL2, TMEM253, SNORD9, RAB2B, TOX4) 0.180866133102954 26 0.0555244229007519 1.01075897078882 1714 0.255387804203058 4 4 0 -6.74061212886159 LTS-006 chr14 22573753 22978511 404759 * character(0) 0.186621978077028 5 0.0174011493873249 1.24173930185102 462 0.284803416574874 4 4 0 -6.83854608042766 LTS-006 chr14 22978512 22979847 1336 * character(0) NA 0 NA 0.731 1 NA NA NA NA NA LTS-006 chr14 22979848 29262455 6282608 * c(MIR208B, MIR4307, LINC00645, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, ADCY4, FOXG1, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, LINC01551, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, NA NA NA NA NA NA NA NA NA LTS-006 SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.179968793352272 120 0.0418467793405475 1.03331466573175 6788 0.244950625718558 4 4 0 -6.7416814845263 LTS-006 NA NA NA NA LTS-006 chr14 29262456 29282482 20027 * LINC01551 NA 0 NA 1.9 1 NA NA NA NA NA LTS-006 chr14 29282483 31495625 2213143 * c(LOC100506071, MIR548AI, AP4S1, COCH, SCFD1, STRN3, G2E3, PRKD1, MIR624) 0.174251200544799 9 0.0344782540161186 1.54648582416263 655 0.595381812173274 10 9 1 -6.98039916557095 LTS-006 chr14 31495626 31549745 54120 * AP4S1 0.156 1 NA 1.62112448555626 25 0.719151532478842 8 8 0 -5.76449869840921 LTS-006 chr14 31549746 31583557 33812 * c(AP4S1, HECTD1) 0.089446284113064 2 0.0162634559672906 1.55275243843624 136 0.34143917629808 11 11 0 -6.75722946358774 LTS-006 chr14 31583558 39901580 8318023 * c(SLC25A21-AS1, LOC100288846, MIR4503, PTCSC3, LINC00609, SEC23A, CFL2, BAZ1A, EGLN3, DTD2, NA, TRAPPC6B, MIPOL1, CLEC14A, SPTSSA, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NKX2-8, IGBP1P1, LINC00639, FAM177A1, GPR33, FOXA1, ARHGAP5, MIA2, NFKBIA, PAX9, MBIP, PNN, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, SSTR1, NKX2-1, NUBPL, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, SLC25A21, AKAP6, KIAA0391) 0.135684099387815 73 0.0494405112761907 1.27823996009032 4543 0.366250476453185 6 6 0 -6.87198411487416 LTS-006 chr14 39901581 39901700 120 * FBXO33 NA 0 NA 1.15672900741017 3 0.0271354626519124 5 NA NA -5.76451388055938 LTS-006 chr14 42355769 42881996 526228 * LRFN5 0.228 1 NA 0.806277434456164 63 0.175627066135738 3 3 0 -5.82283616813907 LTS-006 chr14 42881997 48143920 5261924 * c(SNORD127, LINC00871, C14orf28, RPL10L, MDGA2, FKBP3, FAM179B, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB) 0.26790646962915 6 0.0425237188715506 0.709996358942284 1007 0.162435075615667 2 2 0 -6.73635956063934 LTS-006 chr14 48143921 48144042 122 * MDGA2 NA 0 NA 0.543 1 NA NA NA NA NA LTS-006 chr14 48144043 56130818 7986776 * c(KTN1-AS1, MIR4308, MIR548Y, LINC00648, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, ATG14, SAMD4A, KLHDC2, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, TBPL2, KTN1, LGALS3, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, FBXO34, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, NA NA NA NA NA NA NA NA NA LTS-006 RPS29, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, NEMF, MAPK1IP1L, DLGAP5) 0.260339988762122 101 0.056377456698244 0.665540763249133 5473 0.180629022807313 2 2 0 -7.24869599893848 LTS-006 NA NA NA NA LTS-006 chr14 56130819 56133878 3060 * KTN1 NA 0 NA 0.963 1 NA NA NA NA NA LTS-006 chr14 56133879 72207940 16074062 * c(MED6, LOC100289511, OTX2-AS1, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, EXOC5, WDR89, L3HYPDH, NAA30, GPHB5, RDH12, ADAM21P1, PPP1R36, SLC38A6, C14orf37, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, TMEM30B, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, DAAM1, SYNE2, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, PLEK2, TIMM9, KCNH5, GPX2, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, NA NA NA NA NA NA NA NA NA LTS-006 SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARG2, TOMM20L, KTN1, FLJ22447, PLEKHD1, MAX, MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, RDH11, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, SIX4, PIGH, TMEM260, PPM1A, C14orf105, EXD2, PPP2R5E, SYNJ2BP, SLC39A9, AP5M1, PRKCH, ACTR10, PSMA3, CCDC177, PELI2, RHOJ, GALNT16, PLEKHH1, TRMT5, RAD51B, ARID4A, RTN1, SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 GPR135, LINC00643, SIX1, SLC8A3, SLC10A1, SNAPC1, SPTB, ZFP36L1, CCDC175, ZBTB25, SGPP1, SYT16, ACTN1, ADAM21, ADAM20, DCAF5, CHURC1, AKAP5, SUSD6, KIAA0586) 0.266138919361357 205 0.0744630201359481 0.698132698171957 11362 0.234823410380658 2 2 0 -6.76373144328955 LTS-006 NA NA NA NA LTS-006 chr14 72207941 72431451 223511 * RGS6 NA 0 NA 0.894 1 NA NA NA NA NA LTS-006 chr14 72431452 73240608 809157 * c(DPF3, RGS6) 0.272318380418471 6 0.209527722907177 1.01380256557176 318 0.381906115718693 4 3 1 -6.79962733583921 LTS-006 chr14 73240609 73404680 164072 * c(DCAF4, DPF3) 0.488 1 NA 0.799095522105513 19 0.0676489044183706 3 3 0 -5.91547133974622 LTS-006 chr14 73404681 90398907 16994227 * c(MIR1260A, MIR4505, MIR4709, DIO2-AS1, LINC00911, BATF, NPC2, AHSA1, ACOT2, TMED10, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, DCAF4, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, VSX2, HEATR4, FOXN3-AS1, LTBP2, NA NA NA NA NA NA NA NA NA LTS-006 ALDH6A1, COQ6, FCF1, PGF, ZFYVE1, KCNK10, VRTN, FLVCR2, GPATCH2L, SPATA7, YLPM1, PSEN1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, RBM25, VIPAS39, SEL1L, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, ZC3H14, BBOF1, SLIRP, DNAL1, RPS6KL1, GPR65, STON2, CIPC, NUMB, ALKBH1, EIF2B2, PAPLN, EFCAB11, ELMSAN1, LIN52, NEK9, PNMA1, NRXN3, SPTLC2, ENTPD5, ACYP1, AREL1) 0.451905923196421 159 0.071322450095244 1.01222219710472 10243 0.239302811961452 4 2 2 -6.84893869115909 LTS-006 NA NA NA NA LTS-006 chr14 90398908 90528113 129206 * c(TDP1, KCNK13, EFCAB11) NA 0 NA 0.978516096897828 160 0.16807098492852 4 NA NA -5.77232305428231 LTS-006 chr14 90528114 90528212 99 * KCNK13 NA 0 NA 0.786 1 NA NA NA NA NA LTS-006 chr14 90528213 90722824 194612 * KCNK13 0.215 1 NA 0.724264320026146 55 0.198979123484077 2 2 0 -5.76608353862836 LTS-006 chr14 90722825 92790397 2067573 * c(SNORA11B, FBLN5, TC2N, SLC24A4, TTC7B, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, PSMC1, CATSPERB, C14orf159, CALM1, GPR68, RPS6KA5, TRIP11) 0.254238874773953 51 0.0545146139787755 0.66791511518922 2102 0.190733437033961 2 2 0 -6.8923473515975 LTS-006 chr14 92790398 92792127 1730 * SLC24A4 NA 0 NA 0.7 1 NA NA NA NA NA LTS-006 chr14 92792128 96556846 3764719 * c(MIR3173, TUNAR, CHGA, SERPINA3, IFI27L1, SLC24A4, GSC, SERPINA12, PRIMA1, SYNE3, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, SNHG10, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, DICER1-AS1, SERPINA5, SERPINA10, GLRX5, ASB2, SERPINA1, SERPINA4, UBR7, BTBD7, LGMN, C14orf132, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, LINC00341, CLMN, RIN3, TCL1A, IFI27L2, GON7, SERPINA6, FAM181A, TCL1B, NA NA NA NA NA NA NA NA NA LTS-006 GOLGA5) 0.26799945810078 67 0.0616089636761283 0.717966351971951 3590 0.18103580678009 2 2 0 -6.7493295254495 LTS-006 NA NA NA NA LTS-006 chr14 96556847 96556868 22 * C14orf132 NA 0 NA 0.903 1 NA NA NA NA NA LTS-006 chr14 96556869 96559791 2923 * C14orf132 0.219784519439499 9 0.115455619178973 1.10883591315398 64 0.425143311213342 3 3 0 -6.73360326631061 LTS-006 chr14 96559792 96559820 29 * C14orf132 NA 0 NA 0.853 1 NA NA NA NA NA LTS-006 chr14 96559821 106311988 9752168 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, TDRD9, ANKRD9, AK7, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, NA NA NA NA NA NA NA NA NA LTS-006 C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, HSP90AA1, JAG2, ASPG, KLC1, LINC01550, RTL1, TMEM179, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, EVL, GSKIP, CINP, CDCA4, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, ZFYVE21, MEG8, WDR25, TMEM121, AMN, SETD3, APOPT1, HHIPL1, DLK1, CCNK, BTBD6, MTA1, EXOC3L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 WDR20, BAG5, C14orf2, CDC42BPB, TECPR2) 0.253912819657815 202 0.0704309078645274 0.716276048077557 10038 0.228740242308173 2 2 0 -6.78233278499527 LTS-006 NA NA NA NA LTS-006 chr14 106311989 106318194 6206 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-006 chr14 106318195 106780762 462568 * c(LINC00226, ADAM6, FAM30A) 0.301941214443614 13 0.0661356415023176 0.5827653080594 344 0.199616767871656 1 1 0 -7.06471957143645 LTS-006 chr14 106780763 106791085 10323 * character(0) NA 0 NA 1.552 1 NA NA NA NA NA LTS-006 chr14 106791086 107282973 491888 * LINC00221 0.287554604265359 31 0.103577626595625 0.835123055004821 229 0.399217583675759 2 2 0 -6.80092005029491 LTS-006 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.656182662371035 5 0.0842229184960958 2 NA NA -5.76449695547133 LTS-006 chr15 20169987 20446043 276057 * character(0) 0.403 1 NA 0.665698592936827 24 0.2267066673997 2 2 0 -5.77618122421121 LTS-006 chr15 20446044 22369222 1923179 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.339138326081169 39 0.104795276289171 0.6192938797739 202 0.283958098952107 1 1 0 -6.96717294593026 LTS-006 chr15 22369223 22413895 44673 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.241477389687744 6 0.116834355677886 1.21406723352444 39 0.693355223234847 7 6 1 -6.73930799979763 LTS-006 chr15 22413896 22414041 146 * OR4N3P NA 0 NA 0.427 1 NA NA NA NA NA LTS-006 chr15 22414042 45059809 22645768 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-006 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, SRP14-AS1, ANKRD63, HERC2P7, GOLGA8DP, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, LOC100289656, MIR1282, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MIR4508, MIR4510, MIR4715, TMCO5B, LOC100996255, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CHRNA7, TUBGCP5, CKMT1B, TGM7, CATSPER2, NIPA1, PLA2G4E, TRIM69, PWAR1, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, PATL2, EPB42, BAHD1, FAN1, MAPKBP1, GOLGA8A, RTF1, CYFIP1, MGA, VPS39, FAM189A1, CCNDBP1, NPAP1, LPCAT4, PLA2G4F, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 LRRC57, GABRA5, GABRB3, NUTM1, GABRG3, HYPK, GANC, TMEM87A, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283683, LOC283710, FAM98B, PLA2G4D, GOLGA6L1, GOLGA8IP, PDIA3, EHD4, APBA2, SNORD109B, SNORD115-1, WHAMMP3, FMN1, PWAR4, PWARSN, MRPL42P5, IPW, ITPKA, IVD, C15orf52, GOLGA8EP, OR4N3P, HERC2P10, HERC2P2, C15orf53, C15orf54, LTK, MIR211, MAP1A, MEIS2, MFAP1, TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 GOLGA8B, EIF2AK4, CATSPER2P1, NDN, OCA2, LINC00929, NDUFAF1, NUSAP1, EMC4, SPTBN5, CTDSPL2, KLF13, PLCB2, MAGEL2, DLL4, INO80, CKMT1A, PPP1R14D, MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, NSMCE3, B2M, EMC7, PAK6, KNL1, AVEN, ATP10A, GJD2, STARD9, VPS18, RAD51, SERINC4, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, EIF3J-AS1, PDCD6IPP2, REREP3, GOLGA8S, GOLGA8T, SNRPN, SPINT1, SRP14, MIR626, MIR627, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, SNORD116-19, GOLGA8O, GOLGA6L7P, PIN4P1, OIP5-AS1, TYRO3, UBE3A, MKRN3, CHAC1, PWRN1, PWRN2, KATNBL1, WDR76, TMEM62, SPG11, ELL3, PWAR5, NIPA2, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, HERC2, SNURF, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.26099073955848 367 0.0682119666640855 0.698995290378282 18633 0.240476644995667 2 2 0 -6.77546078374193 LTS-006 NA NA NA NA LTS-006 chr15 45059810 45120795 60986 * TRIM69 NA 0 NA 1.50227867136583 39 2.00925576522614 7 NA NA -5.76441145338529 LTS-006 chr15 45120796 45123760 2965 * character(0) NA 0 NA 0.582 1 NA NA NA NA NA LTS-006 chr15 45123761 48787484 3663724 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.271063701537444 53 0.059262013228554 0.719745503890945 2513 0.196367433215162 2 2 0 -6.75075219295111 LTS-006 chr15 48787485 48787662 178 * FBN1 NA 0 NA 0.612 1 NA NA NA NA NA LTS-006 chr15 48787663 51233981 2446319 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.257397538182487 32 0.0999466793329194 0.654709417840549 2244 0.157785497644944 2 2 0 -7.07437955602724 LTS-006 chr15 51233982 51240244 6263 * c(DCAF13P3, AP4E1) NA 0 NA 0.724 1 NA NA NA NA NA LTS-006 chr15 51240245 59152979 7912735 * c(LOC100129973, BCL2L10, MIR1266, DYX1C1-CCPG1, MIR4713, MYZAP, ADAM10, GNB5, ARPP19, LEO1, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DMXL2, AP4E1, LYSMD2, WDR72, PYGO1, PRTG, LINC00926, SCG3, TMOD3, TMOD2, ONECUT1, GLDN, AQP9, TEX9, TNFAIP8L3, LIPC, UNC13C, MYO5A, NEDD4, RSL24D1, FAM63B, ZNF280D, MNS1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, HSP90AB4P, MIR628, TCF12, POLR2M, CGNL1, ALDH1A2, CCPG1, NA NA NA NA NA NA NA NA NA LTS-006 PIGB) 0.273933765689406 115 0.0821307231350423 0.696705291184122 5586 0.198453419270677 2 2 0 -6.76128512450524 LTS-006 NA NA NA NA LTS-006 chr15 59152980 59209299 56320 * SLTM 0.173775679969282 3 0.164173688513111 0.950156970066865 146 0.234650299008444 4 4 0 -6.74006578334648 LTS-006 chr15 59209300 59213617 4318 * SLTM NA 0 NA 0.794 1 NA NA NA NA NA LTS-006 chr15 59213618 59665144 451527 * c(MIR2116, MYO1E, RNF111, SLTM, CCNB2, LDHAL6B) 0.255464553548261 3 0.0526782687642637 0.677420610472465 440 0.144105143828174 2 2 0 -6.80257579614656 LTS-006 chr15 59665145 59750729 85585 * FAM81A NA 0 NA 1.018 1 NA NA NA NA NA LTS-006 chr15 59750730 60970973 1220244 * c(FAM81A, FOXB1, GTF2A2, ANXA2, RORA, BNIP2, ICE2, GCNT3) 0.191837368400648 32 0.0382453349463865 0.94041553798308 1021 0.353262546287915 4 4 0 -6.8030170559398 LTS-006 chr15 61521337 64040041 2518705 * c(USP3-AS1, LACTB, C2CD4A, MGC15885, FBXL22, C2CD4B, MIR190A, RPS27L, RAB8B, VPS13C, RORA, TPM1, CA12, APH1B, TLN2, HERC1, USP3) 0.368893073588291 25 0.0451645878980424 1.2908154212296 2210 0.305036874133599 6 4 2 -6.79790283422854 LTS-006 chr15 64040042 64041551 1510 * HERC1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-006 chr15 64041552 82443939 18402388 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, MIR4313, IQCH-AS1, ST20-MTHFS, MIR4514, MIR4513, MIR4511, SCAMP2, SNUPN, PDCD7, MIR5003, TSPAN3, FEM1B, DENND4A, SNAPC5, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, CLPX, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, DIS3L, CLK3, SENP8, MTFMT, SLC51B, HIGD2B, TMEM266, HYKK, CRABP1, CSK, DRAIC, C15orf61, NRG4, CSPG4, CTSH, CYP1A1, NA NA NA NA NA NA NA NA NA LTS-006 CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, LCTL, ETFA, FAH, ITGA11, ZNF609, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, DAPK2, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, ST20-AS1, LINC00927, LOC283731, HEXA, TMEM202, IDH3A, GOLGA6A, TMC3, RBPMS2, ANKDD1A, IL16, IREB2, ISLR, C15orf59, KBTBD13, UBAP1L, SKOR1, ANKRD34C, ST20, LOXL1, MIR184, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, OAZ2, SCAPER, RASL12, SPG21, HACD3, PKM, PML, CSNK1G1, ZFAND6, PPIB, LRRC49, PAQR5, DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZWILCH, UACA, IMP3, LARP6, DNAJA4, GOLGA6B, MAP2K1, MAP2K5, PSMA4, C15orf39, THAP10, PARP6, FAM219B, CEMIP, ISLR2, IGDCC4, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 BCL2A1, PPCDC, CELF6, RPL4, RPLP1, STRA6, LOC645752, SH2D7, LOC646938, IQCH, ISL2, GOLGA6C, GOLGA6D, SNX1, SCARNA14, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, TLE3, LOC729739, ANKRD34C-AS1, TYRO3P, NOX5, EFL1, NEIL1, AAGAB, LMAN1L, PEAK1, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, PLEKHO2, WDR61, CD276, STARD5, ANP32A, VWA9, LINC00597, ADPGK, FAM96A, MEX3B, MEGF11, SEMA7A, CILP, LINGO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 UBL7, PIAS1, RAB11A, HERC1, PSTPIP1, LOC91450, CALML4, SLC24A1, UBE2Q2, TRIP4, COX5A, STOML1, KIF23, IGDCC3, KIAA0101, ARNT2) 0.271428657508881 257 0.0759955900413919 0.706109861874909 17128 0.187670306955141 2 2 0 -6.7339998673541 LTS-006 NA NA NA NA LTS-006 chr15 82443940 82450137 6198 * EFL1 NA 0 NA 0.735249713923293 20 0.0896239365348342 2 NA NA -5.76510970311106 LTS-006 chr15 82450138 82512429 62292 * EFL1 0.426 1 NA 1.08818914927689 15 0.261485499916662 4 4 0 -5.76591642731167 LTS-006 chr15 82512430 90818827 8306398 * c(NA, UBE2Q2P2, MIR1276, MIR1179, NA, UBE2Q2L, LINC00933, C15orf38-AP3S2, MIR3529, MIR4515, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, AKAP13, C15orf40, AGBL1, WHAMM, FSD2, HAPLN3, MESP2, LINC00052, ACAN, SEC11A, MIR9-3HG, MRPL46, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, ANPEP, LOC338963, IDH2, ARPIN, ISG20, GOLGA6L5P, KIF7, ZNF710, GOLGA2P7, UBE2Q2P1, GDPGP1, ADAMTS7P1, MIR7-2, MIR9-3, MFGE8, GOLGA6L9, NA NA NA NA NA NA NA NA NA LTS-006 DNM1P41, LOC440300, TTLL13P, NMB, NTRK3, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, SCAND2P, ZSCAN2, DET1, FANCI, MESP1, WDR93, ADAMTSL3, ALPK3, RLBP1, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, BNC1, GOLGA6L10, AEN, EFTUD1P1, MRPS11, SCARNA15, AGBL1-AS1, EFL1, AP3B2, FAM103A1, WDR73, PEX11A, TICRR, SLC28A1, HOMER2, ZNF592) 0.453995968384028 146 0.0742472363258807 1.05065402362437 6108 0.25880993331434 4 2 2 -6.80774654421846 LTS-006 NA NA NA NA LTS-006 chr15 90818828 90818965 138 * character(0) NA 0 NA 1.05959673968353 5 0.0565216772574912 4 NA NA -5.76442736069486 LTS-006 chr15 90818966 90892066 73101 * GABARAPL3 NA 0 NA 1.924 1 NA NA NA NA NA LTS-006 chr15 90892067 90897885 5819 * c(GABARAPL3, ZNF774) 0.282 1 NA 1.60157138496008 11 0.34667962679737 8 8 0 -5.76448185585651 LTS-006 chr15 90897886 102516492 11618607 * c(FAM138E, LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, VPS33B, OR4F4, SLCO3A1, FAM169B, ZNF774, IGF1R, HDDC3, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MAN2A2, MEF2A, LOC440311, PRKXP1, FURIN, PCSK6, LINS1, MCTP2, SELENOS, NA NA NA NA NA NA NA NA NA LTS-006 UNC45A, RGMA, BLM, NR2F2-AS1, CRTC3, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, IQGAP1, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.321555053850666 247 0.0582557256226544 1.65883482895075 6081 0.776153329263868 8 6 2 -6.77463608488669 LTS-006 NA NA NA NA LTS-006 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.93 1 NA NA NA NA NA LTS-006 chr16 81704 81779 76 * character(0) 0.483 1 NA 0.464 1 NA NA NA NA NA LTS-006 chr16 81780 2304058 2222279 * c(LOC100134368, MIR1225, MIR3177, MIR3176, MIR3180-5, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, NA NA NA NA NA NA NA NA NA LTS-006 PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, POLR3K, MSRB1, GNG13, PKD1, LUC7L, SNORA10, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, METRN, SNRNP25, TMEM204, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.450257604594486 248 0.0608437968188708 1.02712880945518 7455 0.302526177017243 4 2 2 -6.78706793329776 LTS-006 NA NA NA NA LTS-006 chr16 2304059 2498828 194770 * c(MIR940, MIR3677, MIR4717, RNPS1, ABCA3, ABCA17P, CCNF) 0.409 1 NA 1.00217497585046 265 0.247928366238298 4 4 0 -5.76610264089541 LTS-006 chr16 2498829 2653223 154395 * c(MIR3178, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CEMP1, C16orf59, CCNF) 0.348359897893212 4 0.231191839533031 1.0264689314758 517 0.274142336719069 4 3 1 -6.73353837972053 LTS-006 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.538 1 NA NA NA NA NA LTS-006 chr16 2672647 2747930 75284 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.767989539809127 78 0.453074309214647 2 NA NA -5.76590538138872 LTS-006 chr16 2747931 11645762 8897832 * c(LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, CLEC16A, MGRN1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, UBN1, CDIP1, NA NA NA NA NA NA NA NA NA LTS-006 HMOX2, C16orf96, PRSS41, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, PRM1, PRM2, NMRAL1, PRM3, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, TNP2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, LITAF, SEC14L5) 0.449101342877081 186 0.0750604932827209 1.03025866254622 7134 0.373510618103654 4 2 2 -6.76425682319189 LTS-006 NA NA NA NA LTS-006 chr16 11645763 12021292 375530 * c(RSL1D1, ZC3H7A, GSPT1, BCAR4, TXNDC11, SNN, LITAF) 0.452389685048273 10 0.0366509057035278 0.901964519125846 498 0.210575519596525 4 2 2 -7.00494059697247 LTS-006 chr16 12021293 12021295 3 * character(0) NA 0 NA 1.106 1 NA NA NA NA NA LTS-006 chr16 12021296 18812675 6791380 * c(MIR365A, NPIPA5, MIR3179-2, MIR3180-4, MIR4718, NTAN1, FOPNL, ERCC4, PDXDC1, ARL6IP1, NOMO1, MPV17L, NOMO2, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, PARN, BFAR, RRN3, NDE1, CPPED1, MIR193B, MKL2, TNFRSF17, MIR484, RPS15A, XYLT1, NPIPA3, ABCC6P1, SHISA9, ABCC6P2, PLA2G10, C16orf45, SNX29, NPIPA1, KIAA0430) 0.406414452237531 47 0.0973718755399164 1.04296518767323 2538 0.258620449291939 4 2 2 -6.78027403826401 LTS-006 chr16 18812676 18812814 139 * ARL6IP1 NA 0 NA 1.19633155562492 4 0.110598372501588 5 NA NA -5.76441014081056 LTS-006 chr16 18812815 18816600 3786 * c(SMG1, ARL6IP1) 0.394 1 NA 1.33619777159187 11 0.0953638963511492 6 6 0 -5.76447465855192 LTS-006 chr16 18816601 20410669 1594069 * c(COQ7, IQCK, GPR139, ITPRIPL2, PDILT, SMG1, GP2, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, UMOD, TMC5, TMC7, CCP110) 0.378699657923944 48 0.0462061705298704 1.38447112020072 1668 0.384496901319188 6 4 2 -6.73566829015775 LTS-006 chr16 20410670 20410713 44 * PDILT NA 0 NA 1.174 1 NA NA NA NA NA LTS-006 chr16 20410714 28608392 8197679 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, ACSM2A, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, PDILT, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, SBK1, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, NA NA NA NA NA NA NA NA NA LTS-006 ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.373772327611872 76 0.109943207029492 1.28659258171601 6360 0.336655340228086 6 4 2 -6.85738384226368 LTS-006 NA NA NA NA LTS-006 chr16 28608393 28621415 13023 * SULT1A1 0.427126558942922 12 0.0446524457235089 0.824123717587491 56 0.618974085226367 2 1 1 -6.74059966819517 LTS-006 chr16 28621416 28631284 9869 * SULT1A1 NA 0 NA 1.251 1 NA NA NA NA NA LTS-006 chr16 28631285 29367359 736075 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, SULT1A1, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.354953158461025 25 0.0953896744936264 1.33374531850695 905 0.33486804261879 6 4 2 -6.76867853836506 LTS-006 chr16 29367360 29370593 3234 * SNX29P2 NA 0 NA 0.84 1 NA NA NA NA NA LTS-006 chr16 29370594 29564513 193920 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.392761392987071 39 0.460337775710715 0 NA NA -5.76484227987771 LTS-006 chr16 29564514 29624261 59748 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.325 1 NA NA NA NA NA LTS-006 chr16 29624262 32487868 2863607 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, LOC390705, MAZ, NA NA NA NA NA NA NA NA NA LTS-006 SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SETD1A, RNF40, MVP) 0.384967051289874 56 0.035757003673243 1.2998529488363 5767 0.290698961434401 6 4 2 -6.79517022873957 LTS-006 NA NA NA NA LTS-006 chr16 32487869 32858995 371127 * LOC390705 NA 0 NA 0.696 1 NA NA NA NA NA LTS-006 chr16 32858996 33647082 788087 * c(SLC6A10P, LOC390705) 0.286935722657681 3 0.224589254714764 0.635858009566971 121 0.512843736101361 2 2 0 -6.75669914616487 LTS-006 chr16 33647083 33647188 106 * character(0) NA 0 NA 0.903 1 NA NA NA NA NA LTS-006 chr16 33647189 33961159 313971 * LINC00273 0.492 1 NA 1.19683685782186 65 0.282731651108364 5 5 0 -5.76441459768502 LTS-006 chr16 33961160 33961265 106 * LINC00273 0.289 1 NA 0.91412970462172 3 0.190473970225155 3 3 0 -5.7644144110712 LTS-006 chr16 33961266 33961378 113 * LINC00273 0.220089664936498 3 0.187960102149366 1.10168211417248 5 0.33396302190512 3 3 0 -6.73306801808536 LTS-006 chr16 33961379 33961395 17 * LINC00273 0.41 1 NA 0.524 1 NA NA NA NA NA LTS-006 chr16 33961396 33965644 4249 * LINC00273 0.338564671620193 69 0.0913866209724029 0.638411291490363 106 0.383537176630951 4 3 1 -6.73783966605639 LTS-006 chr16 33965645 33965677 33 * character(0) NA 0 NA 0.622931088931109 5 0.0202657346276912 2 NA NA -5.76516283731899 LTS-006 chr16 33965678 34256798 291121 * character(0) NA 0 NA 1.347 1 NA NA NA NA NA LTS-006 chr16 34256799 34682380 425582 * c(LINC01566, UBE2MP1) NA 0 NA 1.35598031735041 111 0.308456714362882 6 NA NA -5.76441523040051 LTS-006 chr16 46508169 47001626 493458 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, VPS35, SHCBP1, GPT2, MYLK3) 0.462 1 NA 1.30850585189762 742 0.288050235782907 6 6 0 -5.76929559960512 LTS-006 chr16 47001627 68598226 21596600 * c(CDH5, MIR3935, LINC00919, LINC00920, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NUDT21, ADCY7, CMTM1, NRN1L, CMTM3, C16orf78, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, CYLD, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, CES3, ARL2BP, EDC4, PLA2G15, CNEP1R1, PLEKHG4, NA NA NA NA NA NA NA NA NA LTS-006 DKFZP434H168, LRRC29, AMFR, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, MT1DP, HSD11B2, HSF4, TEPP, KIFC3, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, FAM96B, TPPP3, CES1P1, PHKB, POLR2C, PRMT7, DUS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 LPCAT2, HEATR3, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNORA46, SNORA50A, TK2, CA7, FTO, IRX6, IRX3, FAM65A, USB1, ELMO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, ITFG1, GFOD2, NETO2, LONP2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, MT4, B3GNT9, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.373048553526125 215 0.0748848627202996 1.30537201504423 13949 0.583848123019413 6 4 2 -6.79398026284476 LTS-006 NA NA NA NA LTS-006 chr16 68598227 68598448 222 * ZFP90 NA 0 NA 1.115 1 NA NA NA NA NA LTS-006 chr16 68598449 70894087 2295639 * c(CDH3, SNORD111B, VAC14-AS1, MIR1538, MIR1972-1, SMG1P7, LOC100506083, NFAT5, WWP2, DDX19B, EXOSC6, ZFP90, IL34, TMED6, AARS, NQO1, FUK, SF3B3, COG4, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, HYDIN, CHTF8, PDPR, DDX19A, VAC14, PDF, ST3GAL2, SNTB2, SNORD111, TERF2, TANGO6, CYB5B, COG8, UTP4, MTSS1L, CDH1) 0.329040899735322 11 0.0915849332586971 1.01151446956527 3111 0.233527374329685 4 3 1 -6.75552931825925 LTS-006 chr16 70894088 70894123 36 * HYDIN 0.471 1 NA 1.183 1 NA NA NA NA NA LTS-006 chr16 70894124 71167220 273097 * HYDIN 0.424883944428084 82 0.0767083122034115 1.0492370990689 512 0.346053139260248 4 2 2 -6.73851846022915 LTS-006 chr16 71167221 71508515 341295 * c(HYDIN, CMTR2, ZNF19, ZNF23, CALB2) 0 1 NA 1.01457421584162 301 0.216501371124485 4 4 0 -5.76575463179362 LTS-006 chr16 71508516 72984447 1475932 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, ZFHX3, TXNL4B, ZNF821, TAT, SNORD71, ZNF19, ZNF23, PMFBP1, MARVELD3, DHX38, IST1) 0.175804563441319 3 0.0260576284415908 1.01046201686321 1612 0.213141822060772 4 4 0 -6.81571169686535 LTS-006 chr16 72984448 72994148 9701 * ZFHX3 0.175092653262194 5 0.0184580605698432 1.35327448791868 72 0.290536445988407 10 9 1 -6.74558887191055 LTS-006 chr16 72994149 73126841 132693 * c(HCCAT5, ZFHX3) NA 0 NA 0.699 1 NA NA NA NA NA LTS-006 chr16 73126842 82181977 9055136 * c(LOC100129617, SYCE1L, LINC01568, MIR4720, MIR4719, CLEC3A, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, HSD17B2, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, RFWD3, CENPN, CMC2, PSMD7, VAT1L, FA2H, TMEM231, WDR59, CMIP, GAN, DYNLRB2, ZNRF1, CNTNAP4, SDR42E1, BCAR1 NA NA NA NA NA NA NA NA NA LTS-006 ) 0.280148562748357 140 0.0729380239950055 0.702343904697399 3845 0.207738637546486 2 2 0 -6.75057691000231 LTS-006 NA NA NA NA LTS-006 chr16 82181978 82203705 21728 * MPHOSPH6 0.418 1 NA 0.639184886770016 29 0.264513648879126 2 2 0 -5.76631539314139 LTS-006 chr16 82203706 82203786 81 * MPHOSPH6 0.407491112927789 5 0.0159154013458662 0.372758203792682 7 0.35299028719944 15 9 6 -6.74020925117898 LTS-006 chr16 82203787 82203868 82 * MPHOSPH6 NA 0 NA 0.96 1 NA NA NA NA NA LTS-006 chr16 82203869 89713174 7509306 * c(LOC100287036, MIR1910, MIR3182, C16orf95, MIR4722, MIR5093, MIR5189, CDH13, CDH15, EMC8, RNF166, DNAAF1, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, NA NA NA NA NA NA NA NA NA LTS-006 C16orf74, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, CA5A, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, ZNF469, CBFA2T3, MBTPS1, TAF1C, USP10, KCNG4, KIAA0513, PIEZO1, ATP2C2) 0.453654334114623 196 0.0527719209525827 1.00833238635202 5823 0.575952116065087 4 2 2 -6.84016416568802 LTS-006 NA NA NA NA LTS-006 chr16 89713175 89713255 81 * CHMP1A NA 0 NA 1.37762836508574 3 0.102768347915753 6 NA NA -5.76441108505628 LTS-006 chr16 89713256 89713469 214 * CHMP1A NA 0 NA 0.65 1 NA NA NA NA NA LTS-006 chr16 89713470 89735923 22454 * c(SPATA33, CHMP1A) 0.222 1 NA 0.687892217438429 43 0.150454380086672 2 2 0 -5.76486675954034 LTS-006 chr16 89735924 90161231 425308 * c(VPS9D1-AS1, URAHP, TUBB3, PRDM7, SPATA2L, SPATA33, AFG3L1P, FANCA, TCF25, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.24996758794504 67 0.0532741431499204 0.697707553549613 1334 0.221623531348827 2 2 0 -6.81782409667346 LTS-006 chr16 90161232 90161242 11 * character(0) NA 0 NA 0.774 1 NA NA NA NA NA LTS-006 chr17 6004 6115 112 * DOC2B 0.159 1 NA 1.0046352518173 3 0.0104083299973307 4 4 0 -5.76487128382838 LTS-006 chr17 6116 3845927 3839812 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, P2RX5-TAX1BP3, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, RAP1GAP2, CLUH, SMG6, SHPK, OR1A2, LOC284009, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, RFLNB, ITGAE, OR3A4P, C17orf97, MIR132, MIR212, MIR22, MNT, ASPA, MYO1C, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, NA NA NA NA NA NA NA NA NA LTS-006 VPS53, NCBP3, TSR1, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, BHLHA9, TLCD2, TRPV1, YWHAE, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, CAMKK1, DOC2B, SPATA22, MIR22HG, SCARF1, RPH3AL, SGSM2) 0.182375045018961 139 0.0549506000839677 1.01908790935767 5009 0.410716896917439 4 4 0 -6.73672993505996 LTS-006 NA NA NA NA LTS-006 chr17 3845928 3846802 875 * ATP2A3 0.225 1 NA 0.801434578194249 7 0.26672073856555 3 3 0 -5.76445963120221 LTS-006 chr17 3846803 3945894 99092 * c(ZZEF1, ATP2A3) 0.24 1 NA 0.975449258781537 192 0.208944638909796 4 4 0 -5.76881148732798 LTS-006 chr17 3945895 3947432 1538 * ZZEF1 NA 0 NA 0.774 1 NA NA NA NA NA LTS-006 chr17 3947433 15469181 11521749 * c(MIR744, LOC100128288, C17orf107, LOC100130950, LINC00675, MIR4314, NA, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, COX10, CLDN7, DNAH2, CDRT15, CFAP52, NA NA NA NA NA NA NA NA NA LTS-006 CCDC42, PIK3R6, ODF4, KCTD11, MFSD6L, SLC16A11, FBXO39, DLG4, DNAH9, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, PIK3R5, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 LOC339166, TMEM95, SMTNL2, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, NUP88, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ELAC2, RPL26, SCO1, MAP2K4, SLC35G6, RNF222, PIRT, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, UBE2G1, ZNF18, ZNF232, MIS12, PHF23, CTC1, NDEL1, PITPNM3, TEKT1, SLC25A11, ZMYND15, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, MGC12916, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.265766558674131 232 0.0647769766678317 0.714033864873369 14240 0.175230523222401 2 2 0 -6.75628573706126 LTS-006 NA NA NA NA LTS-006 chr17 15469182 15476410 7229 * TRIM16 0.222326185151709 5 0.129617514248654 0.467462979616446 65 0.29550300987664 3 3 0 -6.75239530042635 LTS-006 chr17 15476411 18315385 2838975 * c(FAM106CP, MIR1288, PEMT, TRIM16, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, CDRT1, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NA NA NA NA NA NA NA NA NA LTS-006 NCOR1, CCDC144A) 0.254397988684275 78 0.0735673105675964 0.726551835888936 4115 0.263231934275051 2 2 0 -6.7778092862286 LTS-006 NA NA NA NA LTS-006 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.203 1 NA NA NA NA NA LTS-006 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.454914057254151 2 0.0155563491861041 0.178937940803127 65 0.0899534655337884 0 0 0 -10.0497419344207 LTS-006 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 1.078 1 NA NA NA NA NA LTS-006 chr17 18483256 20914635 2431380 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, SPECC1, ULK2) 0.282770812994365 45 0.0696707045371803 0.696616585863024 2444 0.206730681894468 2 2 0 -6.76082278694374 LTS-006 chr17 20914636 21117589 202954 * c(USP22, DHRS7B, TMEM11) 0.402 1 NA 0.694599158467349 109 0.173927660119971 2 2 0 -5.7657137608014 LTS-006 chr17 21117590 21318586 200997 * c(NATD1, KCNJ12, MAP2K3, TMEM11) 0.405815475385125 75 0.0552678718394119 0.789884594051595 188 0.212248853282296 3 2 1 -6.7633272636944 LTS-006 chr17 21318587 21318595 9 * KCNJ12 0.319 1 NA 0.659 1 NA NA NA NA NA LTS-006 chr17 21318596 22066835 748240 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.317312086237684 47 0.0607267274777528 0.761730916730724 295 0.217428477142858 2 2 0 -7.12837191941598 LTS-006 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.55 1 NA NA NA NA NA LTS-006 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.238 1 NA 0.737013420424499 17 0.15409694236765 2 2 0 -5.76482116804879 LTS-006 chr17 25630389 27975077 2344689 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-006 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.277004877511903 45 0.0423622902634364 0.721216950978013 4170 0.165043241316989 2 2 0 -6.76907692444503 LTS-006 NA NA NA NA LTS-006 chr17 27975078 27975182 105 * SSH2 NA 0 NA 0.67 1 NA NA NA NA NA LTS-006 chr17 27975183 29562853 1587671 * c(MIR3184, MIR4733, CPD, LRRC37BP1, TBC1D29, EFCAB5, TMIGD1, SUZ12P1, NF1, MIR423, DPRXP4, CRLF3, ADAP2, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, SSH2, GOSR1) 0.240856606137616 18 0.0871484347145869 0.667853531003325 1482 0.18257648202389 2 2 0 -6.89176462539928 LTS-006 chr17 29562854 29701952 139099 * c(EVI2A, EVI2B, NF1, OMG) 0.188792490803564 5 0.0586412823870693 0.7725375487226 346 0.243808798532999 4 4 0 -6.85143848698424 LTS-006 chr17 29701953 29702060 108 * NF1 NA 0 NA 1.725 1 NA NA NA NA NA LTS-006 chr17 29702061 29706048 3988 * NF1 0.228 1 NA 1.06424639623203 58 0.320852507892539 4 4 0 -5.76443140252216 LTS-006 chr17 29706049 29706078 30 * NF1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-006 chr17 29706079 34433730 4727652 * c(MIR365B, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MIR193A, MYO1D, NF1, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, NA NA NA NA NA NA NA NA NA LTS-006 CCL15, CCL16, CCL18, CCL23, C17orf75, SH3GL1P1, SNORD7, MIR632, ZNF207, MMP28, TAF15, RAB11FIP4, CDK5R1, ZNF830, SLFN11, RASL10B) 0.270212325279649 62 0.0930140368565587 0.68291802861821 4101 0.191192159654611 2 2 0 -6.8263944684251 LTS-006 NA NA NA NA LTS-006 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.493 1 NA NA NA NA NA LTS-006 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.321677820433307 39 0.255479198336628 0 NA NA -5.79202161377811 LTS-006 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.639 1 NA NA NA NA NA LTS-006 chr17 34842415 36234009 1391595 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.260932552034319 13 0.0934357039317988 0.678308942237585 1524 0.185615517197145 2 2 0 -6.78061030960619 LTS-006 chr17 36234010 36351755 117746 * c(YWHAEP7, LOC440434) NA 0 NA 0.228 1 NA NA NA NA NA LTS-006 chr17 36351756 36398345 46590 * LOC440434 0.203226590597521 2 0.0459619407771256 0.219776833081985 61 0.174517763355986 3 3 0 -8.17834782134056 LTS-006 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.602 1 NA NA NA NA NA LTS-006 chr17 36421727 44364336 7942610 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-006 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.263583236063816 224 0.0776971975062184 0.713148703287669 15142 0.215003243298008 2 2 0 -6.74433938397695 LTS-006 NA NA NA NA LTS-006 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.006 1 NA NA NA NA NA LTS-006 chr17 44408492 44782233 373742 * character(0) NA 0 NA 0.337662889341339 41 0.234615086949647 0 NA NA -5.82551635536191 LTS-006 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.725 1 NA NA NA NA NA LTS-006 chr17 44788332 45740527 952196 * c(MIR5089, EFCAB13, ITGB3, KPNB1, RPRML, MYL4, MRPL45P2, WNT3, WNT9B, NPEPPS, GOSR2, CDC27) 0.306818277328784 36 0.0742165214995426 0.681757055576324 897 0.159834655773571 2 2 0 -6.90690976666039 LTS-006 chr17 45740528 46806057 1065530 * c(MIR1203, MIR3185, HOXB-AS1, HOXB13, CBX1, OSBPL7, MRPL10, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, COPZ2, PNPO, SP2, PRR15L, CDK5RAP3, SP6, PRAC1, SKAP1, LRRC46, SCRN2, TBKBP1) 0.192232083920945 21 0.0682524027136809 0.985180917821861 1588 0.560161740932519 4 4 0 -6.74426975206522 LTS-006 chr17 46806058 46806085 28 * HOXB13 NA 0 NA 0.642 1 NA NA NA NA NA LTS-006 chr17 46806086 56676812 9870727 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, HSF5, OR4D2, MSI2, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, OR4D1, GIP, GNGT2, TTLL6, LOC284080, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, NA NA NA NA NA NA NA NA NA LTS-006 MPO, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, MRPS23, LUC7L3, PHB, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, UBE2Z, NME1-NME2, SUPT4H1, FLJ45513, TRIM25, VEZF1, ACSF2, FAM117A, COIL, AKAP1, EPX, SPOP, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.263975998116617 112 0.0635084662826563 0.718519647594875 7163 0.182122193157338 2 2 0 -6.78304603110608 LTS-006 NA NA NA NA LTS-006 chr17 56676813 63173756 6496944 * c(MIR4729, MIR4737, MIR3064, MIR5047, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, AMZ2P1, ERN1, PPM1E, TANC2, GH1, GH2, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, LRRC37A3, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, TRIM37, RNFT1, TUBD1, TACO1, PTRH2, PECAM1, BCAS3, SMG8, PRR11, TEX2, NA NA NA NA NA NA NA NA NA LTS-006 TEX14, CCDC47, PSMC5, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, LOC729683, CA4, MIR454, DHX40, LIMD2, KCNH6, VMP1, BRIP1, USP32, PPM1D, RGS9, CEP95, STRADA, PRR29, TBX4, CD79B, MRC2, MED13) 0.261586209141428 61 0.0780989984053097 0.69177966556305 5347 0.181358931633366 2 2 0 -6.79717733648736 LTS-006 NA NA NA NA LTS-006 chr17 63173757 63185571 11815 * RGS9 0 1 NA 0.857790955415315 11 0.346031869262724 3 3 0 -5.76442171523248 LTS-006 chr17 63185572 63898493 712922 * c(CEP112, AXIN2, RGS9) 0.177641223671079 5 0.120030412812753 0.708745091689282 178 0.193288648119281 2 2 0 -7.06897185370271 LTS-006 chr17 63898494 63923651 25158 * CEP112 NA 0 NA 1.21 1 NA NA NA NA NA LTS-006 chr17 63923652 70117410 6193759 * c(SNORA38B, LINC00674, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, CEP112, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PRKCA, MAP2K6, PSMD12, SOX9, MIR634, MIR635, CACNG1, SLC16A6, HELZ) 0.130917993631359 51 0.0518572550561711 1.23830480341505 2560 0.368592190452122 5 5 0 -6.94798596771814 LTS-006 chr17 70117411 70117484 74 * SOX9 NA 0 NA 1.629 1 NA NA NA NA NA LTS-006 chr17 70117485 80363378 10245894 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, NA NA NA NA NA NA NA NA NA LTS-006 TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.113591623790886 342 0.0394186041548684 1.61947910027387 14247 0.448914914589635 8 8 0 -6.77808165760935 LTS-006 NA NA NA NA LTS-006 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 1.836 1 NA NA NA NA NA LTS-006 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.142088512058946 3 0.00901849950564578 3.14502978989008 39 1.32282417485123 20 18 2 -6.7331969870074 LTS-006 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.418 1 NA NA NA NA NA LTS-006 chr17 80391535 81043039 651505 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.110015863887376 13 0.0394760557092394 1.56571420482378 859 0.374657386102814 8 8 0 -6.75224042841608 LTS-006 chr17 81043040 81083625 40586 * METRNL NA 0 NA 1.62344209129575 23 0.380848968436168 8 NA NA -5.76462927074805 LTS-006 chr18 116845 166819 49975 * c(ROCK1P1, USP14) 0.475 1 NA 1.07087542002631 63 0.332680084938204 4 4 0 -5.7647703073909 LTS-006 chr18 166820 910616 743797 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, TYMS, YES1, COLEC12, USP14, THOC1) 0.450585470328772 21 0.0446155535553199 0.950017386886084 611 0.219872608605342 4 2 2 -6.898916075062 LTS-006 chr18 910617 910635 19 * ADCYAP1 0.481 1 NA 2.061 1 NA NA NA NA NA LTS-006 chr18 910636 2847927 1937292 * c(NDC80, ADCYAP1, SMCHD1, LINC00470, CBX3P2, METTL4, EMILIN2) 0.364495001356536 10 0.136296449778497 1.16850245147502 441 0.31876760033623 5 3 2 -6.83074768765169 LTS-006 chr18 2847928 2884908 36981 * EMILIN2 NA 0 NA 0.801 1 NA NA NA NA NA LTS-006 chr18 2884909 15004191 12119283 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, MYL12A, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, NA NA NA NA NA NA NA NA NA LTS-006 CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.445775996825414 137 0.0776932561853131 1.01945540410843 5522 0.862864002345448 4 2 2 -6.75346346467906 LTS-006 NA NA NA NA LTS-006 chr18 15004192 15006193 2002 * character(0) NA 0 NA 1.14164802346323 27 0.350055726129443 5 NA NA -5.76443071634468 LTS-006 chr18 18529727 18529837 111 * ROCK1 0.415 1 NA 0.981842721467788 3 0.75984230820173 4 4 0 -5.76441042431186 LTS-006 chr18 18529838 23901198 5371361 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, TAF4B, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.444580957059815 42 0.104848834828645 0.988697485229858 2908 0.272751155757114 4 2 2 -6.82211557068468 LTS-006 chr18 23901199 24180993 279795 * c(KCTD1, TAF4B) NA 0 NA 1.11661296679398 109 0.225063147781454 5 NA NA -5.77969875055804 LTS-006 chr18 24180994 24432038 251045 * c(KCTD1, AQP4, PCAT18) NA 0 NA 0.727 1 NA NA NA NA NA LTS-006 chr18 24432039 28605715 4173677 * c(CDH2, MIR302F, AQP4-AS1, DSC3, AQP4, CHST9) 0.307 1 NA 0.767682826160531 349 0.159083627484239 2 2 0 -6.36592428092884 LTS-006 chr18 28605716 77897605 49291890 * c(ZSCAN30, SNORD58C, LOC100131655, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, HAUS1, ALPK2, LOXHD1, INO80C, FAM69C, STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, NA NA NA NA NA NA NA NA NA LTS-006 DSG4, CYB5A, C18orf54, TCEB3C, DCC, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, TPGS2, SETBP1, KCNG2, SNORD58B, SNORD58A, SALL3, CDH20, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, RAX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 CXXC1, LOC339298, CPLX4, CCDC178, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ELAC1, ZNF407, CNDP2, MAPK4, CELF4, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, GAREM1, MIR924HG, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, TTR, ZNF24, ZNF236, CCDC102B, RBFA, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, CNDP1, SERPINB7, NOL4, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SEC11C, CTDP1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.267219106147041 404 0.0669972932248905 0.710926414790787 17214 0.296408449548371 2 2 0 -6.74329528222017 LTS-006 NA NA NA NA LTS-006 chr18 77897606 78005362 107757 * c(PARD6G-AS1, ADNP2, PARD6G) NA 0 NA 0.646651341206501 117 0.149470421378543 2 NA NA -5.78751490963379 LTS-006 chr19 107416 307345 199930 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.237 1 NA 0.73452856915844 49 0.187812515068423 2 2 0 -5.76929008689732 LTS-006 chr19 307346 9003645 8696300 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-006 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, ZNF558, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, OR2Z1, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ANGPTL4, MARCH2, CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, MBD3L1, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 DPP9, R3HDM4, TMEM259, TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, MUC16, APBA3, SAFB2, CD70, CDC34) 0.267474177532482 365 0.0625828901489445 0.700729672225769 14924 0.260588908833963 2 2 0 -6.74053557313025 LTS-006 NA NA NA NA LTS-006 chr19 9003646 9005674 2029 * MUC16 0.2 1 NA 0.841885082553825 15 0.407811838030844 3 3 0 -5.76441795963913 LTS-006 chr19 9005675 9021128 15454 * MUC16 0.139839969197308 11 0.142870189014682 0.735791653878517 117 0.39120496725797 6 6 0 -6.75570869855486 LTS-006 chr19 9021129 9028373 7245 * MUC16 0.282 1 NA 0.689927097054559 34 0.126949875717708 2 2 0 -5.76457528915851 LTS-006 chr19 9028374 11491806 2463433 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, RAVER1, OR7D4, OR7G1, OR1M1, SWSAP1, CCDC159, ILF3-AS1, ZNF560, SPC24, ZNF846, OR7D2, DNM2, DNMT1, EPOR, C19orf38, KANK2, TSPAN16, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, C3P1, OR7G2, OR7G3, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, PIN1, S1PR5, NA NA NA NA NA NA NA NA NA LTS-006 ZNF562, FBXL12, C19orf66, ANGPTL8, PPAN, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, MUC16, RAB3D, KEAP1) 0.262586127222176 167 0.0545387106713303 0.717179604271253 5235 0.214728048246038 2 2 0 -6.75043395288173 LTS-006 NA NA NA NA LTS-006 chr19 11491807 11491810 4 * EPOR NA 0 NA 1.202 1 NA NA NA NA NA LTS-006 chr19 11491811 11918216 426406 * c(CCDC151, ZNF653, ZNF441, ZNF491, CNN1, ELAVL3, ZNF627, EPOR, ZNF833P, ECSIT, ACP5, ZNF823, PRKCSH, RGL3, ELOF1) 0.341383804169227 3 0.275238684296618 0.989686919259904 685 0.222837517355498 4 3 1 -6.74227172396703 LTS-006 chr19 11918217 11918754 538 * ZNF491 0.436 1 NA 1.19701831225104 15 0.269521533727562 5 5 0 -5.7644101450041 LTS-006 chr19 11918755 12222861 304107 * c(ZNF491, ZNF440, ZNF433, ZNF763, ZNF844, ZNF788, ZNF878, ZNF69, ZNF700, ZNF439) 0.462437098981357 20 0.0264921040868287 0.956470707178255 558 0.419592363135596 4 2 2 -7.44258307916981 LTS-006 chr19 12222862 12428623 205762 * c(ZNF625-ZNF20, ZNF563, ZNF788, ZNF44, ZNF20, ZNF136, ZNF625) 0.432 1 NA 0.974731221697763 349 0.240075818736269 4 4 0 -5.77151015787427 LTS-006 chr19 12428624 12707978 279355 * c(ZNF443, ZNF563, ZNF564, ZNF709, ZNF490, ZNF442, ZNF799) 0.3676961817067 9 0.222030966308756 0.957605714929541 469 0.248928560393569 4 3 1 -6.75641860094123 LTS-006 chr19 12707979 12741353 33375 * c(ZNF791, ZNF490) NA 0 NA 0.828880317010191 86 0.136819111812075 3 NA NA -5.76690163030301 LTS-006 chr19 12741354 12741432 79 * character(0) 0.434 1 NA 1.647 1 NA NA NA NA NA LTS-006 chr19 12741433 19770774 7029342 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, NA NA NA NA NA NA NA NA NA LTS-006 SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 IL27RA, GDF15, TECR, IER2, ADGRE5) 0.452710461722915 251 0.0681552754941922 1.02908878088254 12388 0.261430010091034 4 2 2 -6.78869824432577 LTS-006 NA NA NA NA LTS-006 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.696 1 NA NA NA NA NA LTS-006 chr19 19772755 22942325 3169571 * c(ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, LINC00664, ZNF506, GOLGA2P9, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.459999437807586 29 0.0252002326207107 0.883604435142578 1123 0.250187904403037 4 2 2 -8.05477299541145 LTS-006 chr19 22942326 24345121 1402796 * c(HAVCR1P1, ZNF730, ZNF681, ZNF675, ZNF728, RPSAP58, ZNF724, ZNF726, ZNF91, ZNF99, ZNF254) NA 0 NA 0.942247028114287 443 0.264051976761531 3 NA NA -5.84054119026786 LTS-006 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.448 1 NA 1.24318522472298 5 0.468104475518019 5 5 0 -5.77000542505838 LTS-006 chr19 29567135 38871720 9304586 * c(HPN-AS1, LINC01531, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, THEG5, UBA2, LOC100631378, LINC00904, MIR5196, UPK1A-AS1, TMEM147, CEBPA, CEBPG, SPINT2, POP4, HCST, UPK1A, SLC7A9, TBCB, ARHGAP33, ZNF573, WDR88, WTIP, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, DPY19L3, ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, LGI4, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, NA NA NA NA NA NA NA NA NA LTS-006 ZFP30, ZNF507, SIPA1L3, HAUS5, ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, GPI, LOC284395, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF181, ZNF260, VSTM2B, ZNF850, SBSN, ZNF829, ZNF568, RGS9BP, KRTDAP, ZNF790, NUDT19, ZNF793, LOC400684, LOC400685, LRP3, MAG, NPHS1, ATP4A, ZNF571, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, GPATCH1, PSENEN, ZNF302, LIN37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SLC7A10, PSMD8, TSHZ3, GRAMD1A, ZFP14, ZNF529, HAMP, CATSPERG, PRODH2, SCN1B, C19orf33, SCGB1B2P, CHST8, SDHAF1, LOC644189, LOC644554, OVOL3, LOC728752, TYROBP, UQCRFS1, USF2, ZNF146, KCTD15, PLEKHF1, RBM42, LRFN3, IGFLR1, CEBPA-AS1, DPF1, CAPNS1, C19orf12, WDR87, KIRREL2, ANKRD27, PDCD2L, ZNF527, ZNF607, NFKBID, CEP89, ZNF382, ZNF566, ALKBH6, RHPN2, URI1, CCNE1, ZNF30, YIF1B, PDCD5, FAAP24, TDRD12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ZNF461, ZNF585B, DMKN, CD22, NA, KCNK6, PPP1R14A, KIAA0355, ZNF536, KMT2B) 0.44022041673966 128 0.0853048205060816 1.02984496377161 8575 0.242436646563676 4 2 2 -6.73926240882878 LTS-006 NA NA NA NA LTS-006 chr19 38871721 38872823 1103 * PSMD8 NA 0 NA 0.479 1 NA NA NA NA NA LTS-006 chr19 38872824 38882862 10039 * c(GGN, SPRED3, PSMD8) NA 0 NA 0.536466345296618 87 0.0883818188137076 1 NA NA -5.76458278294413 LTS-006 chr19 38882863 38884896 2034 * SPRED3 NA 0 NA 0.886 1 NA NA NA NA NA LTS-006 chr19 38884897 40376832 1491936 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, RYR1, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, FCGBP, DYRK1B, TIMM50, NA NA NA NA NA NA NA NA NA LTS-006 GMFG) 0.450544072342714 37 0.0538951963740016 1.03045668350838 2939 0.224461959973372 4 2 2 -6.80342471029277 LTS-006 NA NA NA NA LTS-006 chr19 40376833 40376849 17 * FCGBP NA 0 NA 1.209 1 NA NA NA NA NA LTS-006 chr19 40376850 40399881 23032 * FCGBP 0.448 1 NA 0.619082963844217 39 0.232327715396658 1 1 0 -5.76861949960387 LTS-006 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.636 1 NA NA NA NA NA LTS-006 chr19 40405935 41386366 980432 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, ZNF780B, AKT2, PLD3, ZNF780A, C19orf54, SERTAD3, SERTAD1, ZNF546, MAP3K10, RAB4B, PSMC4, PRX, SPTBN4, BLVRB, SNRPA, MIR641, COQ8B, CNTD2, ITPKC, MIA, LTBP4, FCGBP, NUMBL, SHKBP1) 0.429384566258963 36 0.0837576388366581 0.999252409661261 2160 0.280963605714727 4 2 2 -6.74159543256329 LTS-006 chr19 41386367 41386420 54 * CYP2A7 0.363 1 NA 0.625 1 NA NA NA NA NA LTS-006 chr19 41386421 41782004 395584 * c(HNRNPUL1, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, CYP2S1, AXL) 0.347862296580092 20 0.165449499370972 1.05956907670299 511 0.345486034039078 4 3 1 -6.73513262464656 LTS-006 chr19 41782005 41869392 87388 * c(HNRNPUL1, TMEM91, TGFB1, B9D2, CCDC97) 0.488 1 NA 1.01632192166141 143 0.205999861583741 4 4 0 -5.76471949087632 LTS-006 chr19 41869393 44890801 3021409 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, LIPE-AS1, CEACAM5, RABAC1, ZNF234, CEACAM3, CEACAM7, CEACAM8, CEACAM4, ZNF526, IRGQ, ZNF428, LYPD4, DEDD2, MEGF8, CADM4, ERF, CIC, ETHE1, PRG1, ZNF285, LYPD3, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, GRIK5, GSK3A, ZNF404, ZNF284, ZNF233, B3GNT8, KCNN4, PINLYP, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, NA NA NA NA NA NA NA NA NA LTS-006 PLAUR, POU2F2, ATP5SL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CD177, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, ZNF574, PSG10P, PHLDB3, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF230, ZNF576, B9D2, TEX101, CNFN, CEACAM21, ARHGEF1, ZNF235, CD79A) 0.449217417486448 113 0.0827745431881083 1.02128131791999 4206 0.274701949200594 4 2 2 -6.76180662178472 LTS-006 NA NA NA NA LTS-006 chr19 44890802 44892206 1405 * c(ZNF285, ZNF112) 0.058 1 NA 1.0917768960179 29 0.206778938861409 4 4 0 -5.76447146222321 LTS-006 chr19 44892207 44983567 91361 * c(ZNF285, ZNF180, ZNF112, ZNF229) 0.300567731963806 9 0.180179848423118 1.1093415856628 133 0.356812090553793 5 4 1 -6.73583855912991 LTS-006 chr19 44983568 45004305 20738 * ZNF180 0.425 1 NA 1.18220093703755 17 0.448341264781508 5 5 0 -5.76441752670859 LTS-006 chr19 45004306 49519058 4514753 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, TOMM40, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, NTN5, CRX, PPM1N, KLC3, IGSF23, DACT3, SIX5, IGFL2, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, EMP3, ERCC1, ERCC2, CARD8, ZC3H4, NA NA NA NA NA NA NA NA NA LTS-006 FBXO46, FOSB, SYNGR4, CBLC, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, GIPR, BBC3, C5AR2, DHDH, GPR4, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IGFL1, KCNJ14, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LIG1, BCAM, MIR330, IGFL4, NOVA2, NPAS1, NUCB1, HSD17B14, QPCTL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 FAM83E, RASIP1, TMEM160, PNMAL1, TMEM143, PPP5C, CABP5, SPHK2, MEIS3, CEACAM19, PTGIR, PNMAL2, PLEKHA4, MARK4, BAX, PVR, NECTIN2, BCAT2, RELB, BCL3, RPL18, RTN2, ELSPBP1, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, ZNF180, TRAPPC6A, FKRP, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, GRWD1, CCDC8, ZNF541, PLA2G4C, NAPA, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 EXOC3L2, CYTH2, CCDC114, LOC93429, GNG8, DHX34) 0.451650391495181 179 0.0491139564364487 1.02013578826445 7940 0.389099233662944 4 2 2 -6.83032935990882 LTS-006 NA NA NA NA LTS-006 chr19 49519059 49519466 408 * c(RUVBL2, LHB) 0.31 1 NA 1.26006732645533 9 0.365009056204242 5 5 0 -5.76441525593766 LTS-006 chr19 49519467 49573275 53809 * c(SNAR-G1, SNAR-G2, LOC101059948, CGB3, CGB1, CGB2, KCNA7, LHB, NTF4, CGB5, CGB7, CGB8) 0.310753894843221 11 0.139712887412332 1.01894599635833 83 0.597836816074528 5 4 1 -6.74218070112081 LTS-006 chr19 49573276 49611319 38044 * c(KCNA7, SNRNP70) 0.486 1 NA 0.984094663661747 75 0.215123583170316 4 4 0 -5.76554855080051 LTS-006 chr19 49611320 51918394 2307075 * c(SNAR-F, SNAR-B2, SNAR-D, MIR4324, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, KLK11, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, CLDND2, JOSD2, IZUMO2, CPT1C, ALDH16A1, VSIG10L, C19orf84, CCDC155, AP2A1, ADM5, ETFB, FCGRT, ATF5, FLT3LG, RPL13A, NUP62, NAPSB, KLK5, ZNF473, IL4I1, KLK13, SNORD35A, SNORD34, SNORD33, SNORD32A, SIGLEC7, DKKL1, SIGLEC9, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, NA NA NA NA NA NA NA NA NA LTS-006 SLC6A16, HRC, PRMT1, C19orf81, KLK3, IRF3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, MIR150, KLK14, KLK12, MYBPC2, NKG7, SHANK1, NOSIP, VRK3, PTOV1, POLD1, TRPM4, PIH1D1, C19orf73, ASPDH, KLK15, PRRG2, KLK7, KLK6, KLK10, SLC17A7, RCN3, PRR12, SCAF1, TSKS, KLKP1, RPS11, RRAS, CLEC11A, LIN7B, SNRNP70, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, TBC1D17, MYH14, FUZ, MED25, BCL2L12, SYT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, SIGLEC10, CTU1, ACPT, LRRC4B, CD33, NAPSA, CD37, KLK4) 0.444945940492933 119 0.0668906000231502 1.02953971534752 5116 0.562896983007954 4 2 2 -6.75551141281762 LTS-006 NA NA NA NA LTS-006 chr19 51918395 51919998 1604 * c(LOC100129083, SIGLEC10) 0.5 1 NA 0.866692846763716 19 0.21217467701696 3 3 0 -5.76441042119514 LTS-006 chr19 51919999 52133720 213722 * c(LOC100129083, SIGLEC8, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, SIGLEC6) 0.447935564498786 28 0.0925755804477514 1.01185152938481 471 0.422516756274578 4 2 2 -6.75108460587912 LTS-006 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.792 1 NA NA NA NA NA LTS-006 chr19 52146303 52196924 50622 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) NA 0 NA 1.66250316504747 40 0.717840770501977 8 NA NA -5.76441912976657 LTS-006 chr19 52196925 55344322 3147398 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR4752, MIR371B, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, BIRC8, LENG8, KIR3DL3, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, CDC42EP5, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, LILRA4, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, LILRA5, NA NA NA NA NA NA NA NA NA LTS-006 KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, ZNF808, ZNF761, LAIR1, LAIR2, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, PRKCG, TTYH1, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRP2, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, KIR3DX1, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 ZNF845, LENG9, ZNF432) 0.436876280255242 207 0.0791892060217729 0.998883199594321 5432 0.36859667829134 4 2 2 -6.7505372338131 LTS-006 NA NA NA NA LTS-006 chr19 55344323 55358658 14336 * c(KIR2DS4, KIR3DL1) 0.289 1 NA 0.757764541314625 15 0.373784468071412 2 2 0 -5.76470355261702 LTS-006 chr19 55358659 55508821 150163 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NLRP2, NCR1) 0.286536270832453 13 0.166453273646667 1.00534351007194 310 0.627151549733079 5 4 1 -6.74173938151615 LTS-006 chr19 55508822 55597369 88548 * c(RDH13, GP6, EPS8L1, NLRP2) 0.491 1 NA 0.980016408681925 207 0.241862934716197 4 4 0 -5.76688382659513 LTS-006 chr19 55597370 56235537 638168 * c(SBK3, ZNF865, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.447423358574187 55 0.0717590525032321 1.03481012380582 1911 0.294887642696347 4 2 2 -6.76069752218739 LTS-006 chr19 56235538 56274214 38677 * c(NLRP9, RFPL4A) 0.377 1 NA 1.04473854598971 69 0.2315277681335 4 4 0 -5.76446992957338 LTS-006 chr19 56274215 56284582 10368 * c(RFPL4A, RFPL4AL1) 0.351394678492238 9 0.0590465917729381 1.26080113387863 52 0.996906836834466 1 1 0 -6.73782981736451 LTS-006 chr19 56284583 56307583 23001 * NLRP11 0.488 1 NA 1.09065315975984 47 0.202551655110429 4 4 0 -5.76541870689374 LTS-006 chr19 56307584 58601221 2293638 * c(MIMT1, ZNF667-AS1, LOC100128398, PEG3-AS1, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF550, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF444, ZNF416, VN1R1, NA NA NA NA NA NA NA NA NA LTS-006 ZNF304, ZNF471, USP29, ZNF71, ZNF667, ZSCAN18, AURKC, ZNF814, ZNF17, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, GALP, ZNF551, ZNF835, ZNF264) 0.458915118374095 161 0.0347824996601552 1.0257298913522 3871 0.490318653945893 4 2 2 -7.0729901266935 LTS-006 NA NA NA NA LTS-006 chr19 58601222 58697118 95897 * c(ZNF274, ZSCAN18, ZNF329) NA 0 NA 1.03649316532943 54 0.196884842382617 4 NA NA -5.76443189869466 LTS-006 chr19 58697119 58718269 21151 * ZNF274 0.323 1 NA 0.68893101392395 11 0.158454467219508 2 2 0 -5.76475683208812 LTS-006 chr19 58718270 59082605 364336 * c(A1BG, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZNF8, MZF1, ZNF132, ZBTB45, UBE2M) 0.236875326189058 11 0.0393497141031545 0.68767776124258 875 0.165008349659461 2 2 0 -7.137447967247 LTS-006 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.637677253679612 9 0.0639003129882789 2 NA NA -5.76660518702525 LTS-006 chr20 68260 77013 8754 * DEFB125 0.21 1 NA 2.4703194209825 13 0.766582785266319 13 13 0 -5.7644111251837 LTS-006 chr20 77014 306399 229386 * c(C20orf96, DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, SOX12, DEFB126, ZCCHC3) 0.192613897576157 12 0.071772947972102 2.31492624104364 268 0.580266664349477 14 12 2 -6.74116824788089 LTS-006 chr20 306400 462539 156140 * c(RBCK1, TBC1D20, TRIB3, SOX12, NRSN2) 0.146280788265159 12 0.0745338544189515 2.97932420115193 404 0.713016382916583 19 17 2 -6.73799773269569 LTS-006 chr20 462540 1559302 1096763 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, SLC52A3, SIRPD, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, RAD21L1, TCF15, FAM110A, SCRT2, PSMF1, SNPH) 0.199396612671039 27 0.0324743598179248 2.52943335470653 1265 0.59958292430783 14 12 2 -6.75290298491565 LTS-006 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.068 1 NA NA NA NA NA LTS-006 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0690677818417679 39 0.00607787962884475 0 NA NA -23.4984175528089 LTS-006 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 2.537 1 NA NA NA NA NA LTS-006 chr20 1600391 3630590 2030200 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, TMC2, C20orf141, SIRPA, STK35, UBOX5, C20orf194, GNRH2, IDH3B, TGM6, ITPA, OXT, PDYN, AVP, SIRPG, CPXM1, EBF4, PTPRA, FASTKD5, VPS16, PCED1A, MRPS26, DDRGK1, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, SLC4A11, ATRN, LZTS3) 0.189874465438643 53 0.0433839810450903 2.56087873352156 2360 0.680827327993536 14 12 2 -6.74272188028965 LTS-006 chr20 3630591 11907237 8276647 * c(SNAP25-AS1, MIR103B2, PCNA-AS1, LINC00658, CENPB, CHGB, RNF24, HSPA12B, PROKR2, SLX4IP, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, BTBD3, PLCB1, PRND, LAMP5, SPEF1, TMEM230, LOC339593, MIR103A2, PCNA, TRMT6, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AP5S1, FERMT1, PRNP, TMX4, GPCPD1, PAK5, MAVS, ANKEF1, GFRA4, LOC643406, BMP2, SIGLEC1, SNAP25, LINC01433, PANK2, ADAM33, MKKS, MCM8, ATRN, CDS2, RASSF2, NA NA NA NA NA NA NA NA NA LTS-006 CDC25B, SLC23A2) 0.219409077788849 74 0.0476926324491494 2.25094961625193 4324 0.723487940907232 12 10 2 -6.74630943871196 LTS-006 NA NA NA NA LTS-006 chr20 11907238 11907276 39 * BTBD3 NA 0 NA 2.162 1 NA NA NA NA NA LTS-006 chr20 11907277 13869087 1961811 * c(ISM1-AS1, ISM1, ESF1, SPTLC3, TASP1, NDUFAF5, SEL1L2) 0.255232881969293 12 0.0230210707172733 2.01781984812073 557 0.601446444526202 10 8 2 -6.73695767040095 LTS-006 chr20 13869088 13869131 44 * SEL1L2 0.198 1 NA 0.801 1 NA NA NA NA NA LTS-006 chr20 13869132 14066843 197712 * c(MACROD2, SEL1L2) 0.253298223409422 2 0.275771644662754 1.35619319051622 55 0.657945733232451 6 5 1 -6.73343372006207 LTS-006 chr20 14066844 14303730 236887 * MACROD2 NA 0 NA 0.738 1 NA NA NA NA NA LTS-006 chr20 14303731 14306773 3043 * c(MACROD2, FLRT3) 0.244 1 NA 0.860649574088201 61 0.276836475967726 3 3 0 -5.76441284068945 LTS-006 chr20 14306774 15480548 1173775 * c(MACROD2-AS1, MACROD2, FLRT3) 0.264 1 NA 0.747247281795292 63 0.115585167195346 2 2 0 -5.92012798773964 LTS-006 chr20 15480549 25199109 9718561 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, PET117, MIR3192, CST8, SEC23B, POLR3F, RBBP9, DSTN, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, CFAP61, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, RIN2, DZANK1, KIF16B, KIZ, OTOR, APMAP, NA NA NA NA NA NA NA NA NA LTS-006 RALGAPA2, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, NAPB, GZF1, NKX2-4, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6) 0.2797007443988 97 0.0574994527838895 0.733342944022475 4356 0.204583894839748 2 2 0 -6.92797925213818 LTS-006 NA NA NA NA LTS-006 chr20 25199110 25745701 546592 * c(NANP, NINL, ABHD12, ZNF337, PYGB, FAM182B, ENTPD6, GINS1) NA 0 NA 0.732364256618183 697 0.185271160945389 2 NA NA -5.77605494449656 LTS-006 chr20 25745702 25752581 6880 * FAM182B NA 0 NA 1.094 1 NA NA NA NA NA LTS-006 chr20 25752582 25752627 46 * FAM182B 0.378 1 NA 1.16013226596158 3 0.0588755750148848 5 5 0 -5.76441703875387 LTS-006 chr20 25752628 25900196 147569 * FAM182B 0.352173652908109 11 0.0809684562597738 1.12388279045097 38 0.471509063100657 4 3 1 -6.74550255153035 LTS-006 chr20 25900197 26188981 288785 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.371677831663417 19 0.0948114472324718 0.541847239364555 59 0.293620214747681 1 1 0 -6.76461194681496 LTS-006 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.829550815687891 3 0.131058511106045 3 NA NA -5.76441312488853 LTS-006 chr20 29625845 29625852 8 * FRG1BP 0.165 1 NA 1.407 1 NA NA NA NA NA LTS-006 chr20 29625853 30526041 900189 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, MLLT10P1, LINC00028, TTLL9, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.292117274528895 41 0.0960904553520072 0.755496595159095 805 0.225464647867388 2 2 0 -6.81057427844452 LTS-006 chr20 30526042 30556583 30542 * c(TTLL9, XKR7, PDRG1) NA 0 NA 0.705673140090291 75 0.177506805351079 2 NA NA -5.7644128999283 LTS-006 chr20 30556584 30582881 26298 * XKR7 NA 0 NA 0.928 1 NA NA NA NA NA LTS-006 chr20 30582882 30585762 2881 * XKR7 0.198 1 NA 1.0010058346831 35 0.177123998725101 4 4 0 -5.76446309461768 LTS-006 chr20 30585763 33879731 3293969 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, PXMP4, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, CCM2L, SUN5, LOC149950, COMMD7, BPIFB4, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, NCOA6, POFUT1, TRPC4AP, GGT7, C20orf203, GSS, HCK, BPIFA4P, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, NA NA NA NA NA NA NA NA NA LTS-006 BPIFB2, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.18162699512759 103 0.0429891233327582 1.03628880323701 4690 0.280412201342373 4 4 0 -6.73702422954293 LTS-006 NA NA NA NA LTS-006 chr20 33879732 36685915 2806184 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MYL9, BLCAP, CEP250, VSTM2L, FAM83C, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, NNAT, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, SRC, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39, TTI1) 0.17577188344335 36 0.0553373779359431 0.990950367877368 3728 0.25659050454827 4 4 0 -6.7925223548356 LTS-006 chr20 36685916 36720189 34274 * RPRD1B NA 0 NA 0.984702381726417 62 0.218616727174106 4 NA NA -5.76537789392236 LTS-006 chr20 36720190 36793501 73312 * c(RPRD1B, TGM2) 0.348 1 NA 1.36744107240103 127 0.284965856827718 6 6 0 -5.76443696945975 LTS-006 chr20 36793502 44333753 7540252 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, SGK2, WFDC2, SPINT3, TOMM34, SERINC3, PTPRT, PKIG, RBPJL, SNHG11, FITM2, WFDC12, SLC32A1, RIMS4, WFDC10A, WFDC6, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, ZHX3, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, TP53TG5, WFDC10B, HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, LBP, MYBL2, IFT52, OSER1, PIGT, PI3, PLCG1, DBNDD2, EPPIN, RALGAPB, JPH2, KCNK15, NA NA NA NA NA NA NA NA NA LTS-006 DHX35, SDC4, SEMG1, SEMG2, SRSF6, LPIN3, SLPI, BPI, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, FAM83D, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, MAFB) 0.366698977494945 113 0.0780624840896721 1.32989061176263 5718 0.385083453412499 6 4 2 -6.75843561371907 LTS-006 NA NA NA NA LTS-006 chr20 44333754 44403199 69446 * c(WFDC3, WFDC13, SPINT4) NA 0 NA 0.663043494103141 39 0.395683942972224 2 NA NA -5.76551683130924 LTS-006 chr20 44403200 44403987 788 * WFDC3 NA 0 NA 1.782 1 NA NA NA NA NA LTS-006 chr20 44403988 51802132 7398145 * c(ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3194, MIR3616, ATP9A, TRERNA1, CEBPB, ARFGEF2, UBE2C, TP53RK, DNTTIP1, SPATA25, OCSTAMP, TSHZ2, WFDC3, NEURL2, ZSWIM3, FAM65C, CSE1L, EYA2, SLC9A8, ADNP, ZMYND8, SNORD12C, MOCS3, LINC00494, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, MMP9, ZFAS1, NFATC2, SLC35C2, PLTP, CTSA, BCAS4, DDX27, ZNF334, ZFP64, RNF114, SULF2, SALL4, ZNFX1, PTGIS, SLC12A5, PREX1, NA NA NA NA NA NA NA NA NA LTS-006 PTPN1, NCOA5, ELMO2, ZNF335, PCIF1, CDH22, SLC13A3, SNAI1, STAU1, SNORD12, MIR645, TNNC2, UBE2V1, MKRN7P, SLC2A10, NCOA3, PARD6B, DPM1, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.366416805091631 91 0.0764814117887892 1.30149558883686 6064 0.346257722817486 6 4 2 -6.8122147473815 LTS-006 NA NA NA NA LTS-006 chr20 51802133 52553610 751478 * c(TSHZ2, SUMO1P1, ZNF217) 0.106 1 NA 1.39008146813507 173 0.277524117821455 6 6 0 -5.76763030358935 LTS-006 chr20 52553611 57769140 5215530 * c(MIR298, MIR4325, MTRNR2L3, SLMO2-ATP5E, MIR4756, MIR4532, MIR5095, FAM210B, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, FAM209A, SPO11, GNAS, FAM209B, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP4R1L, RBM38, DOK5, PMEPA1, CASS4, RAB22A, BMP7, AURKA, TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, BCAS1, STX16, VAPB) 0.155959961187831 86 0.0695809746863587 1.30308410003636 3174 0.37017493208664 6 6 0 -6.8002810696032 LTS-006 chr20 57769141 58461953 692813 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3) NA 0 NA 1.32564408624215 373 0.291073070431006 6 NA NA -5.76723587072017 LTS-006 chr20 58461954 58467015 5062 * SYCP2 NA 0 NA 1.651 1 NA NA NA NA NA LTS-006 chr20 58467016 58576349 109334 * c(SYCP2, PPP1R3D, CDH26, FAM217B) 0.401 1 NA 1.5605646919244 353 0.380383115249761 7 7 0 -5.76471666031679 LTS-006 chr20 58576350 62872259 4295910 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, MIR4533, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, NA NA NA NA NA NA NA NA NA LTS-006 C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.30149888680356 204 0.0460486943519716 1.67719719914506 5757 0.474024559994673 8 6 2 -6.74060015644865 LTS-006 NA NA NA NA LTS-006 chr20 62872260 62959313 87054 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.60481879929227 121 0.656366239711953 8 NA NA -5.76468559523052 LTS-006 chr21 9825764 9825809 46 * character(0) 0.144 1 NA 0.547 1 NA NA NA NA NA LTS-006 chr21 9825810 11059877 1234068 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.32520165702384 40 0.0852422039446032 0.724488793620801 189 0.612944242469818 1 1 0 -6.93941102420084 LTS-006 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.03858899065497 5 0.101098961418998 4 NA NA -5.76448823998849 LTS-006 chr21 14745307 14756794 11488 * character(0) 0.495 1 NA 0.870067914902888 11 0.590133420969745 3 3 0 -5.76441013564794 LTS-006 chr21 14756795 15918700 1161906 * c(MIR3156-3, LIPI, ABCC13, POTED, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.456318267872979 10 0.0377254703232592 0.882694940397138 347 0.201115133352235 4 2 2 -7.36915806071154 LTS-006 chr21 15918701 15954407 35707 * SAMSN1 NA 0 NA 1.052 1 NA NA NA NA NA LTS-006 chr21 15954408 35821087 19866680 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, LINC01549, PAXBP1-AS1, LINC00649, LINC00159, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, OLIG2, USP16, CCT8, BTG3, ADAMTS5, LINC00310, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, NA NA NA NA NA NA NA NA NA LTS-006 DONSON, HUNK, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, ATP5O, SMIM11A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, ITSN1, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, KRTAP19-8, LINC01548, TMEM50B, NRIP1, URB1-AS1, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, KCNE2) 0.451548028530908 179 0.0683064557072108 0.995775943652979 7241 0.819549145450431 4 2 2 -6.80507588135259 LTS-006 NA NA NA NA LTS-006 chr21 35821088 36262125 441038 * c(LINC01426, RCAN1, KCNE1, LINC00160, CLIC6, RUNX1) NA 0 NA 0.971848302974431 397 0.221058572587824 4 NA NA -5.78421100982381 LTS-006 chr21 36262126 37406849 1144724 * c(LOC100506403, SETD4, MIR802, RUNX1-IT1, RUNX1) 0.307 1 NA 0.699801570186104 43 0.174591626031716 2 2 0 -5.76691028505349 LTS-006 chr21 37406850 48084989 10678140 * c(LOC100129027, LOC100133286, MIR3197, ITGB2-AS1, CBR3-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, DYRK1A, PLAC4, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, NA NA NA NA NA NA NA NA NA LTS-006 C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, HLCS, HMGN1, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00114, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, BRWD1, SLC37A1, PCBP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, SH3BGR, TMPRSS3, SIM2, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, FAM207A, PDXK, RRP1, PSMG1, CBR1, CBR3, CBS, MCM3AP, RSPH1, UMODL1, ABCG1, DOPEY2) 0.268307594588554 365 0.0643958301557028 0.70510157027641 11301 0.22743082450327 2 2 0 -6.73456288558833 LTS-006 NA NA NA NA LTS-006 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 1.029 1 NA NA NA NA NA LTS-006 chr22 16157762 20307253 4149492 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-006 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.192749234576605 136 0.063673876332709 1.04705578593742 4487 0.423372320833485 4 4 0 -6.7446422188154 LTS-006 NA NA NA NA LTS-006 chr22 20307254 20307256 3 * DGCR6L 0.204 1 NA 0.128 1 NA NA NA NA NA LTS-006 chr22 20307257 20398710 91454 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.376495714229858 39 0.307660799162699 0 NA NA -5.76452768143333 LTS-006 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.133 1 NA NA NA NA NA LTS-006 chr22 20717835 24342396 3624562 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, NA NA NA NA NA NA NA NA NA LTS-006 SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.183158608193966 104 0.0685743322266328 1.03450654546532 4368 0.37578982047358 4 4 0 -6.73351242944683 LTS-006 NA NA NA NA LTS-006 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.07 1 NA NA NA NA NA LTS-006 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0684107817766457 55 0.00536951113525709 0 NA NA -25.8003910905444 LTS-006 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.797 1 NA NA NA NA NA LTS-006 chr22 24400149 42896795 18496647 * c(LOC100128531, LOC100130899, NDUFA6-AS1, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, NA NA NA NA NA NA NA NA NA LTS-006 SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, ZC3H7B, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, XRCC6, TMEM211, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TXN2, TMEM184B, GGA1, SEC14L3, GGT1, SNORD43, GGT5, INPP5J, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, POM121L9P, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 SDC4P, LRRC75B, OGFRP1, LGALS1, LGALS2, LIF, LIMK2, LOC400927, SRRD, MIR33A, MB, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, UPB1, PMM1, POLR2F, MIEF1, TUG1, CCDC157, ZMAT5, SEPT3, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, XPNPEP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TIMP3, TOP1P2, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1656, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.183763809694021 416 0.0482392433639291 1.00954133745422 21633 0.455560123928306 4 4 0 -6.76040824112588 LTS-006 NA NA NA NA LTS-006 chr22 42896796 42898652 1857 * SERHL NA 0 NA 1.611 1 NA NA NA NA NA LTS-006 chr22 42898653 42914773 16121 * c(RRP7A, SERHL) 0.36468057796604 2 0.00353553390593274 1.44154588324938 89 0.325302338353262 20 13 7 -6.81440029069728 LTS-006 chr22 42914774 42915645 872 * RRP7A NA 0 NA 0.642 1 NA NA NA NA NA LTS-006 chr22 42915646 51206426 8290781 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, NA NA NA NA NA NA NA NA NA LTS-006 LOC284933, RPL23AP82, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.187022198656257 318 0.043918151707035 1.0062889473972 8082 0.284653327429404 4 4 0 -6.77473445475931 LTS-006 NA NA NA NA LTS-006 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.83219334581211 49 0.120533363292769 3 NA NA -5.7655775982962 LTS-006 chrX 2699993 2700027 35 * XG 0.197 1 NA 0.395 1 NA NA NA NA NA LTS-006 chrX 2700028 20204500 17504473 * c(GS1-600G8.3, LINC01546, PHKA2-AS1, LINC01203, SCARNA9L, CLDN34, MIR23C, PIR-FIGF, MIR4768, MIR4770, MIR4767, ADGRG2, SCML2, RAI2, MSL3, CA5B, CLCN4, BEND2, ASB11, ASB9, MOSPD2, TCEANC, FAM9A, FAM9B, FAM9C, EIF1AX, FANCB, VEGFD, CXorf23, MAP7D2, MXRA5, EGFL6, AMELX, VCX, GLRA2, GPM6B, GRPR, SH3KBP1, HCCS, CA5BP1, ARSH, TLR8-AS1, SHROOM2, ANOS1, MAP3K15, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, NA NA NA NA NA NA NA NA NA LTS-006 VCX3B, MID1, NHS, GPR143, TLR7, TLR8, VCX2, VCX3A, PDHA1, PHKA2, PIGA, PPEF1, GEMIN8, TXLNG, WWC3, PRKX, PRPS2, CTPS2, TMEM27, NLGN4X, ACE2, RBBP7, RPS6KA3, RS1, SCML1, TRAPPC2, MAGEB17, BMX, CDKL5, TBL1X, TMSB4X, MIR651, LOC729609, XG, S100G, PUDP, PNPLA4, ZRSR2, OFD1, PIR, INE2, AP1S2, GYG2, REPS2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.206764592555153 112 0.0660574707855928 0.91843513076764 8096 0.250070377450568 3 3 0 -7.21418873677487 LTS-006 NA NA NA NA LTS-006 chrX 20204501 20204520 20 * RPS6KA3 NA 0 NA 0.778 1 NA NA NA NA NA LTS-006 chrX 20204521 23422268 3217748 * c(PTCHD1-AS, PHEX-AS1, PTCHD1, ZNF645, DDX53, CNKSR2, SMPX, KLHL34, YY2, MBTPS2, PHEX, RPS6KA3, SMS) 0.237413107165463 6 0.0143724273060143 0.739367420022537 1187 0.177060702770131 3 3 0 -8.83949455395792 LTS-006 chrX 23422269 23858578 436310 * c(PRDX4, ACOT9, SAT1, APOO) 0.20295467554133 4 0.0348568501158667 1.0087722867702 215 0.244247496431692 4 4 0 -6.89074214982412 LTS-006 chrX 23858579 23874298 15720 * APOO NA 0 NA 0.611 1 NA NA NA NA NA LTS-006 chrX 23874299 39520617 15646319 * c(SUPT20HL1, ZFX-AS1, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF2S3, CXorf58, TAB3, HYPM, GK, LINC01281, CFAP47, MAGEB18, LANCL3, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, OTC, PDK3, FTHL17, POLA1, PRRG1, MID1IP1, RPGR, NA, SCARNA23, DYNLT3, TSPAN7, XK, ZFX, APOO, CXorf21, KLHL15, TMEM47, SRPX, SYTL5, NA NA NA NA NA NA NA NA NA LTS-006 PCYT1B) 0.251298031969527 39 0.0819491136008988 0.729024404558106 4049 0.186707207802031 2 2 0 -7.00289869247651 LTS-006 NA NA NA NA LTS-006 chrX 39520618 39646246 125629 * character(0) NA 0 NA 1.272 1 NA NA NA NA NA LTS-006 chrX 39646247 40450602 804356 * c(ATP6AP2, BCOR) 0.254264226000955 4 0.224132401346466 1.33527823611598 188 0.362204001388915 6 5 1 -6.73452032690703 LTS-006 chrX 40450603 40499009 48407 * c(ATP6AP2, CXorf38, MPC1L) 0.415 1 NA 1.30054417132892 118 0.320431676934085 6 6 0 -5.76493602590214 LTS-006 chrX 40499010 47004923 6505914 * c(LOC100132831, FUNDC1, CXorf38, DDX3X, GPR82, GPR34, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, NDUFB11, KRBOX4, CHST7, NYX, RP2, DUSP21, ZNF674, LINC01545, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, RBM10, SLC9A7, CASK, RGN, MED14, JADE3) 0.368183656070278 12 0.0732018794261128 1.29214250004168 2409 0.28048848626327 6 4 2 -6.86313530953454 LTS-006 chrX 47004924 47006712 1789 * RBM10 NA 0 NA 1.424 1 NA NA NA NA NA LTS-006 chrX 47006713 47862104 855392 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, ZNF81, ARAF, CXXC1P1, CDK16, CFP, ZNF630, SYN1, TIMP1, UBA1, ZNF182, ZNF41, ZNF157, USP11, RBM10, UXT, INE1) 0.37911211458168 14 0.153130142882911 1.3955093269503 1469 0.312015249520411 6 4 2 -6.7370130524207 LTS-006 chrX 47862105 47916569 54465 * c(SPACA5, ZNF630, ZNF182) NA 0 NA 2.608 1 NA NA NA NA NA LTS-006 chrX 47916570 47970738 54169 * c(SSX6, SPACA5, ZNF630) NA 0 NA 2.14276379717514 70 0.394387276954522 11 NA NA -5.76444631382958 LTS-006 chrX 47970739 47976446 5708 * c(SSX6, SPACA5) NA 0 NA 1.142 1 NA NA NA NA NA LTS-006 chrX 47976447 49062336 1085890 * c(HDAC6, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, FTSJ1, GATA1, GPKOW, PCSK1N, SSX6, SSX9, ERAS, KCND1, SPACA5, GLOD5, PRICKLE3, TBC1D25, PLP2, OTUD5, GRIPAP1, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYP, TFE3, SLC35A2, WAS, CACNA1F, MAGIX, CCDC120, SLC38A5) 0.394368363190766 25 0.121314989455824 1.36984184483901 2112 0.30225428043914 6 4 2 -6.74467842279787 LTS-006 chrX 49062337 49062955 619 * CACNA1F NA 0 NA 0.938 1 NA NA NA NA NA LTS-006 chrX 49062956 49108134 45179 * c(CCDC22, FOXP3, CACNA1F) 0.200717504438123 7 0.0207742973063213 1.0224865959783 327 0.252246513546878 8 7 1 -6.95796825224527 LTS-006 chrX 49108135 51239230 2131096 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, NUDT10, GAGE1, GAGE2C, GAGE4, GAGE2E, USP27X, MIR188, FOXP3, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, MIR532, MIR660, GAGE12J, GAGE2D, GAGE2A, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, PAGE4) 0.416698440929475 8 0.0420575710867174 1.39270277271802 1132 0.320804464047742 6 3 3 -6.8192279885108 LTS-006 chrX 51239231 51239261 31 * NUDT11 NA 0 NA 1.131 1 NA NA NA NA NA LTS-006 chrX 51239262 57622607 6383346 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, XAGE3, XAGE5, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, SPANXN5, PFKFB1, GPR173, SPIN2A, GNL3L, FAM120C, LINC01420, NUDT11, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, FAM104B, NA NA NA NA NA NA NA NA NA LTS-006 PAGE5, MAGED1) 0.349475866285502 42 0.129142755645279 1.03754068570592 3895 0.239381005039892 4 3 1 -6.73664926505583 LTS-006 NA NA NA NA LTS-006 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 1.01881704295635 125 0.231357669755811 4 NA NA -5.76504053198992 LTS-006 chrX 61999880 64949461 2949582 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278) 0 1 NA 1.04891739728156 871 0.237170955626977 4 4 0 -5.77219935855469 LTS-006 chrX 64949462 79826253 14876792 * c(MIR374B, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, VSIG4, COX7B, MAP2K4P1, OTUD6A, UPRT, MAGEE2, CXorf65, AWAT1, AWAT2, ZDHHC15, FAM46D, DLG3, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, P2RY10, CXCR3, LPAR4, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, NA NA NA NA NA NA NA NA NA LTS-006 CITED1, MSN, NAP1L2, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, ATRX, ERCC6L, GDPD2, JPX, HDAC8, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, STARD8, HEPH, MED12) 0.414418023775649 54 0.147449460718267 1.0348472490394 7703 0.237725670762765 4 2 2 -6.74232578303933 LTS-006 NA NA NA NA LTS-006 chrX 79826254 79929770 103517 * BRWD3 0 1 NA 0.998861334242651 71 0.315357890649927 4 4 0 -5.76509649486817 LTS-006 chrX 79929771 80553305 623535 * c(BRWD3, SH3BGRL, HMGN5) NA 0 NA 1.00899912246985 320 0.271689903680198 4 NA NA -5.76710290670017 LTS-006 chrX 80553306 101439808 20886503 * c(ARMCX4, UBE2DNL, RPL36A-HNRNPH2, CHM, DACH2, APOOL, HDX, TCEAL2, PABPC5, CSTF2, CYLC1, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, FAM133A, RPA4, HNRNPH2, BEX5, SATL1, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, CPXCR1, TAF7L, ARMCX6, POU3F4, NXF5, KLHL4, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, SH3BGRL, BTK, TSPAN6, ZNF711, TRMT2B, POF1B, ZMAT1, TGIF2LX, SYTL4, NA NA NA NA NA NA NA NA NA LTS-006 ARMCX2) 0.265334268943132 43 0.0469094223924318 0.739328362935554 4248 0.212017606780379 2 2 0 -7.24387355445194 LTS-006 NA NA NA NA LTS-006 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.072 1 NA NA NA NA NA LTS-006 chrX 101472923 101624980 152058 * character(0) NA 0 NA 0.200643255236554 40 0.270066059107862 0 NA NA -6.24239807907539 LTS-006 chrX 101624981 117032922 15407942 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, NA NA NA NA NA NA NA NA NA LTS-006 GLRA4, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.270353608181359 57 0.0719323294844721 0.72994078308329 6761 0.168104104778298 2 2 0 -7.04369643944848 LTS-006 NA NA NA NA LTS-006 chrX 117032923 139793912 22760990 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, NA NA NA NA NA NA NA NA NA LTS-006 GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 MMGT1, RAB33A, ARHGEF6, CD40LG) 0.261948603185245 97 0.066099386275361 0.709428121350979 9558 0.258937081182132 2 2 0 -6.74395825100267 LTS-006 NA NA NA NA LTS-006 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 0.879 1 NA NA NA NA NA LTS-006 chrX 139795670 153714002 13918333 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, NA NA NA NA NA NA NA NA NA LTS-006 GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, LINC00632, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-006 PDZD4, OPN1LW, RENBP, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, UBL4A, TMEM187, LAGE3, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.269791737578152 90 0.080840834047146 0.753881276656922 7358 0.190545325463893 2 2 0 -7.5501557284327 LTS-006 NA NA NA NA LTS-006 chrX 153714003 154507173 793171 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, SLC10A3, IKBKG) 0.26730100201538 19 0.0741428603622092 0.698489062362253 1249 0.204554254568665 2 2 0 -6.73558991125156 LTS-006 chrX 154507174 154528381 21208 * CLIC2 NA 0 NA 0.647815033914643 28 0.0871576750347341 2 NA NA -5.77727363817767 LTS-006 chrX 154528382 154580269 51888 * CLIC2 NA 0 NA 0.291708988607423 40 0.233202118783531 0 NA NA -5.80566902508914 LTS-006 chrX 154580270 154774986 194717 * TMLHE NA 0 NA 1.19618496660261 39 3.70663147398559 5 NA NA -5.76441014052836 LTS-006 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.208190065654644 25 0.0783188568183508 0 NA NA -12.4263555944446 LTS-006 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.339 1 NA 0.901777064847522 17 0.600984413030723 3 3 0 -5.78127140138673 LTS-006 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 0.742715900091122 3 0.211887548792593 2 NA NA -5.76441337293511 LTS-006 chr1 14677 1593812 1579136 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, SLC35E2B, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, NA NA NA NA NA NA NA NA NA LTS-007 PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.434270868252225 86 0.0519997527090826 0.924912867050117 2965 0.246834455921584 1 1 0 -6.77312326559417 LTS-007 NA NA NA NA LTS-007 chr1 1593813 1596925 3113 * c(SLC35E2B, CDK11B) 0.476 1 NA 1.30126488280825 67 0.288890933582392 6 6 0 -5.76441576312527 LTS-007 chr1 1596926 1639726 42801 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.419 1 NA 0.832229456310559 116 0.325433975160716 0 0 0 -5.76441957470476 LTS-007 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.019 1 NA NA NA NA NA LTS-007 chr1 1643792 1647871 4080 * c(CDK11A, SLC35E2B, CDK11B) 0.497169753493621 2 0.00282842712474619 0.38407681609785 40 0.268586704713241 0 0 0 -21.5343691733758 LTS-007 chr1 1647872 1647905 34 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.805 1 NA NA NA NA NA LTS-007 chr1 1647906 1683247 35342 * c(NADK, CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.443948267857741 11 0.0601505686514343 0.836480131194328 137 1.1075890236254 0 0 0 -6.80388784788427 LTS-007 chr1 1683248 12856273 11173026 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, CLCN6, AADACL3, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, NA NA NA NA NA NA NA NA NA LTS-007 ARHGEF16, GNB1, LOC284661, UBIAD1, ZBTB48, C1orf174, TMEM52, AADACL4, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, PRAMEF12, MIR34A, LINC00982, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, CASZ1, VPS13D, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 PRAMEF1, SLC2A5, NADK, SRM, SNORA59B, MIR551A, TNFRSF1B, TP73, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, MFN2) 0.445230755054864 303 0.0587954238385831 0.946669118578979 12138 0.246159981907642 1 1 0 -6.98623737773399 LTS-007 NA NA NA NA LTS-007 chr1 12856274 12907350 51077 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1) 0.104 1 NA 0.965080961848704 18 0.482975702713671 2 2 0 -5.764466181351 LTS-007 chr1 12907351 13183966 276616 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.371484148240745 10 0.0868437293840686 1.24288132956205 62 0.444268882583205 6 5 1 -6.73910865310412 LTS-007 chr1 13183967 13183973 7 * HNRNPCL2 0.403 1 NA 0.949 1 NA NA NA NA NA LTS-007 chr1 13183974 16786381 3602408 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, PRAMEF9, FAM131C, SPATA21, TMEM82, PRAMEF17, PRAMEF13, NA, HNRNPCL2, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NECAP2, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, NA, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.442764222912332 78 0.0482285393516329 0.933803510178044 3257 0.45798767160144 1 1 0 -6.85491858941438 LTS-007 chr1 16786382 16974666 188285 * c(MST1P2, CROCCP3, NBPF1, NECAP2, CROCCP2) 0.419040862939489 16 0.0621323520129945 0.702539283607427 82 0.22323806027817 0 0 0 -6.80479315913211 LTS-007 chr1 16974667 16975084 418 * MST1P2 0.263 1 NA 0.788968351464883 8 0.222376129243098 0 0 0 -5.76442811987714 LTS-007 chr1 16975085 16975868 784 * MST1P2 0.404 1 NA 0.77729521651818 14 0.191711221131399 0 0 0 -5.76448113264653 LTS-007 chr1 16975869 16975914 46 * MST1P2 NA 0 NA 0.307 1 NA NA NA NA NA LTS-007 chr1 16975915 16978916 3002 * MST1P2 0.367411553093479 5 0.0744231146889191 0.369322988544327 76 0.545850208229842 4 4 0 -6.74069625079797 LTS-007 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.459 1 NA NA NA NA NA LTS-007 chr1 17009684 17012093 2410 * character(0) 0.476667227240452 4 0.0118988794990677 2.06789534600561 60 0.505415574099545 17 9 8 -11.5882775459425 LTS-007 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.979 1 NA NA NA NA NA LTS-007 chr1 17017583 17197619 180037 * c(MST1L, ESPNP, CROCC) 0.327685481293447 30 0.0731499797691693 1.30086354528649 211 0.431537502087032 6 6 0 -6.73338426000993 LTS-007 chr1 17197620 17248500 50881 * CROCC 0.467 1 NA 1.03774519504597 9 0.452158281037859 3 3 0 -5.76447216393054 LTS-007 chr1 17248501 17248531 31 * CROCC NA 0 NA 2.075 1 NA NA NA NA NA LTS-007 chr1 17248532 17274945 26414 * CROCC 0.435975698822978 7 0.0757197212783842 1.73297383253181 76 0.509279674311342 13 7 6 -6.75031924292666 LTS-007 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.929 1 NA NA NA NA NA LTS-007 chr1 17275408 24862979 7587572 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, RCAN3, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, ATP13A2, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LOC284632, LINC00339, PADI1, PLA2G2E, HMGCL, NA NA NA NA NA NA NA NA NA LTS-007 HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, LDLRAD2, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, SDHB, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ALDH4A1, EIF4G3, STPG1, CROCC, CDA, ZBTB40, CDC42) 0.422718438103301 200 0.10196229227134 0.96960720948447 9607 0.282179857045837 2 1 1 -6.74758916417858 LTS-007 NA NA NA NA LTS-007 chr1 24862980 25599145 736166 * c(SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, RHD, RUNX3) 0.417988501105095 12 0.135385952227718 0.883333068349816 560 0.363682602019261 1 1 0 -6.73665415165664 LTS-007 chr1 25599146 25656954 57809 * c(RSRP1, RHD) NA 0 NA 0.0431494939332735 75 0.0370297080636518 0 NA NA -18.7232359954189 LTS-007 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.133 1 NA NA NA NA NA LTS-007 chr1 25666924 46082438 20415515 * c(FAM229A, MATN1-AS1, LOC100129924, NFYC-AS1, KDM4A-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, MIR5584, WASF2, CNKSR1, ZMPSTE24, AKR1A1, TESK2, CD52, PPIE, PPIH, CAP1, KHDRBS1, GMEB1, NUDC, SF3A3, EBNA1BP2, KIF2C, RCC1, MED8, SMIM12, AZIN2, TMEM54, TOE1, ERMAP, CSMD2, RAB42, FAM46B, PLK3, CCDC163, KDF1, TMCO2, ZNF684, GJB4, HMGB4, NA NA NA NA NA NA NA NA NA LTS-007 RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, KLF17, TMEM125, COL8A2, COL9A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CTPS1, CITED4, PAQR7, DPH2, EDN2, PHC2, AGO3, AGO4, FAM76A, TXLNA, SLFNL1, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, FOXJ3, SCMH1, WDTC1, NCDN, SZT2, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, MMACHC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LDLRAP1, MYCBP, HEYL, AGO1, BEST4, SNORD55, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, C1orf228, ZFP69, TCTEX1D4, SERINC2, BMP8A, INPP5B, SVBP, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, LINC01144, CSMD2-AS1, MIR30C1, MIR30E, MATN1, MPL, SLC2A1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FAM183A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, YBX1, OPRD1, PAFAH2, PRDX1, ZNF593, ZNF691, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, ATP6V0B, POU3F1, GPN2, MED18, TRIT1, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, RNF220, EVA1B, TMEM57, TRIM62, PEF1, PPT1, PIGV, MAP7D1, IQCC, DMAP1, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, ZSWIM5, KIAA1522, PTPRF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DLGAP3, HIVEP3, RBBP4, RHCE, RLF, RPA2, RPS6KA1, RPS8, GPATCH3, CLSPN, OXCT2, RRAGC, TINAGL1, P3H1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, SMAP2, S100PBP, MEAF6, EXO5, CEP85, ELOVL1, ST3GAL3, MRPS15, MARCKSL1, SLC2A1, ZFP69B, ZBTB8A, LOC653160, SLC6A9, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, TIE1, ZBTB8B, LINC01137, PPIEL, CCDC30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 UROD, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, ERI3, C1orf50, CCDC28B, NKAIN1, TMEM53, AKIRIN1, HECTD3, YRDC, PPCS, LIN28A, SH3D21, SNIP1, ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, HYI, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, ZMYND12, ZDHHC18, NR0B2, NT5C1A, TRIM63, FAM167B, HPDL, MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, PTCH2, EIF3I, B4GALT2, PABPC4, EIF2B3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ARTN, MAP3K6, SPOCD1, KCNQ4, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, SNORD46, SNORD38A, SNORD38B, THEMIS2, IPO13, SDC3, KDM4A, PUM1, RIMS3, CDC20, THRAP3) 0.438563629556546 396 0.0797163480410025 0.949558952184103 24590 0.224628317756928 2 1 1 -7.06907536969258 LTS-007 NA NA NA NA LTS-007 chr1 46082439 46083227 789 * NASP NA 0 NA 2.003 1 NA NA NA NA NA LTS-007 chr1 46083228 46096334 13107 * c(CCDC17, NASP, GPBP1L1) 0.247 1 NA 1.71908558333297 125 0.280838364716743 12 12 0 -5.76441099331917 LTS-007 chr1 46096335 57340727 11244393 * c(EFCAB14-AS1, MIR761, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, LRRC41, FAF1, KTI12, OSBPL9, LRRC42, DMBX1, TCEANC2, PODN, CPT2, KNCN, MOB3C, GLIS1, CYP4A11, CYP4B1, CYP4Z2P, SLC25A3P1, LEXM, DHCR24, DIO1, ELAVL4, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, NA NA NA NA NA NA NA NA NA LTS-007 ACOT11, CYP4X1, RNF11, CYP4A22, C1orf185, GPX7, FAM151A, FAM159A, IPP, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, TMEM69, MRPL37, HSPB11, CMPK1, LURAP1, YIPF1, SPATA6, C1orf123, TTC22, ECHDC2, POMGNT1, PRKAA2, NDC1, RAB3B, GPBP1L1, CYB5RL, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, TAL1, TTC4, RPS15AP10, FAAHP1, C8A, UQCRH, LRP8, BSND, BEND5, ZYG11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RAD54L, FOXD2-AS1, AGBL4, PRPF38A, PIK3R3, MKNK1, PLPP3, BTF3L4, ZFYVE9, TMEM59, EFCAB14) 0.437381641085027 212 0.0745630418508457 0.974823368379039 9404 0.270691403230305 2 1 1 -6.76581370556581 LTS-007 NA NA NA NA LTS-007 chr1 57340728 57341915 1188 * C8A 0 1 NA 1.32956993168351 7 1.81377991262131 7 7 0 -5.76441021043263 LTS-007 chr1 57341916 59096153 1754238 * c(OMA1, DAB1, TACSTD2, C8A, C8B) 0.358275870898484 9 0.132961565039592 1.02439337372082 317 0.519628726185828 3 3 0 -6.76804396532006 LTS-007 chr1 59096154 59096169 16 * character(0) 0.398 1 NA 2.516 1 NA NA NA NA NA LTS-007 chr1 59096170 71868823 12772654 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, MIR4711, ZRANB2-AS2, PATJ, HHLA3, MYSM1, C1orf87, UBE2U, CTH, IL23R, CYP2J2, KANK4, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, NEGR1, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, JUN, LEPR, C1orf141, MIR101-1, MIR186, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, PIN1P1, L1TD1, LEPROT, RAVER2, FGGY, LRRC40, DEPDC1, NA NA NA NA NA NA NA NA NA LTS-007 GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, HSD52, USP1, DLEU2L, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.4464403823277 133 0.0651918458097485 0.994158497577304 6503 0.27499474701305 2 1 1 -6.81827882166356 LTS-007 NA NA NA NA LTS-007 chr1 71868824 77096259 5227436 * c(FPGT-TNNI3K, NEGR1-IT1, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.444065434046344 17 0.117654435430504 1.08382339560623 1601 0.314886910490647 3 2 1 -6.7704115853452 LTS-007 chr1 77096260 89401939 12305680 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GNG5, GTF2B, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, NA NA NA NA NA NA NA NA NA LTS-007 SELENOF, CLCA3P, CLCA2, HS2ST1) 0.437208853630768 66 0.0744088434977724 1.00863518734125 4881 0.27991681612431 2 1 1 -6.80656054019618 LTS-007 NA NA NA NA LTS-007 chr1 89401940 89408647 6708 * KYAT3 NA 0 NA 0.829 1 NA NA NA NA NA LTS-007 chr1 89408648 91727728 2319081 * c(GBP4, GBP5, GBP6, HFM1, LRRC8B, GBP1, GBP2, GBP3, ZNF326, BARHL2, GBP7, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, LOC729930, ZNF644, LRRC8C) 0.442862941603943 26 0.0492964033638904 0.926049084779597 1438 0.203475734872578 1 1 0 -6.85356041143014 LTS-007 chr1 91727729 91781354 53626 * HFM1 0 1 NA 0.925585572066204 47 0.403507685625599 1 1 0 -5.76445774230755 LTS-007 chr1 91781355 93652084 1870730 * c(GLMN, HFM1, MTF2, KIAA1107, EPHX4, GFI1, SNORA66, BTBD8, CCDC18, C1orf146, FAM69A, TMED5, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7) 0.285149347732477 11 0.19936563030135 0.937896740599631 1497 0.308867266516112 2 2 0 -6.98316126882478 LTS-007 chr1 93652085 93711782 59698 * CCDC18 0.418 1 NA 0.90140676348316 76 0.200780450488203 1 1 0 -5.76451663802286 LTS-007 chr1 93711783 94019446 307664 * c(CCDC18-AS1, DR1, CCDC18, FNBP1L) 0.454 1 NA 0.928240394592218 237 0.200684328325037 1 1 0 -5.76595910835218 LTS-007 chr1 94019447 118516082 24496636 * c(MIR942, MIR760, LINC01349, LOC100129046, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, MAB21L3, SLC44A3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, NA NA NA NA NA NA NA NA NA LTS-007 CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, S1PR1, CELSR2, ALG14, SPAG17, HIPK1, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, DNTTIP2, IGSF3, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, GDAP2, FAM46C, PALMD, FNBP1L, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, PTBP2, ABCD3, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, BCAR3, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, RTCA, SLC16A4, CD2, CD101, ARHGAP29, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.439936390442936 364 0.0753512625175888 0.982547719681426 15400 0.276175114991986 2 1 1 -6.76483936131634 LTS-007 NA NA NA NA LTS-007 chr1 118516083 118635890 119808 * SPAG17 0 1 NA 0.98283076843448 167 0.371528336777287 2 2 0 -5.76441320906005 LTS-007 chr1 118635891 121116733 2480843 * c(SRGAP2D, WARS2, ADAM30, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, HIST2H2BA, NBPF7, NOTCH2, HAO2, LINC00622, FAM72B, TBX15, REG4, ZNF697) 0.347722089410511 41 0.131880419782283 0.971530283132465 1275 0.684950639679731 3 3 0 -6.81318311379855 LTS-007 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.975600784464774 59 0.2010527480066 2 NA NA -5.76469144492597 LTS-007 chr1 143912360 144013853 101494 * FAM72D 0.259 1 NA 0.717528852286508 5 0.26488337056146 0 0 0 -5.7850655222117 LTS-007 chr1 144013854 144680028 666175 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.271 1 NA 0.366805344148002 42 0.411218842833728 0 0 0 -7.05378400061017 LTS-007 chr1 144680029 144851495 171467 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.802 1 NA NA NA NA NA LTS-007 chr1 144851496 144994658 143163 * c(NBPF20, LOC653513, PDE4DIP) 0.44227348464557 43 0.0616882456034024 0.961990168737809 395 0.297990155394775 2 1 1 -6.7919666340794 LTS-007 chr1 144994659 144994861 203 * c(NBPF20, LOC653513, PDE4DIP) 0.267 1 NA 0.875110467176642 5 0.0976969805060525 1 1 0 -5.76443101932079 LTS-007 chr1 144994862 146509905 1515044 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, LOC653513, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, SEC22B, PDE4DIP, RBM8A) 0.31776226951275 54 0.114068953119104 0.956638029078021 1608 0.361374941233493 3 3 0 -7.02608495545772 LTS-007 chr1 146509906 146510112 207 * c(NA, NA, NA, LOC728989) 0.493 1 NA 1.54584567839828 5 0.326845223309138 10 10 0 -5.76441057658427 LTS-007 chr1 146510113 151497217 4987105 * c(FCGR1CP, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, ENSA, FCGR1A, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, NBPF15, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, NA NA NA NA NA NA NA NA NA LTS-007 CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, NBPF13P, PPIAL4D, LOC645166, HIST2H3D, VPS72, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A) 0.434829759845782 55 0.0753290112284765 0.958579484425107 5061 0.28608455209551 2 1 1 -6.77530150508728 LTS-007 NA NA NA NA LTS-007 chr1 151497218 151862661 365444 * c(LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, RIIAD1, THEM5, LINGO4, OAZ3, CGN, RORC, MRPL9, MIR554, TUFT1, SNX27) 0.44449791801591 21 0.0367826304763798 1.01838377927528 939 0.227937007440303 2 1 1 -6.93705107090211 LTS-007 chr1 151862662 152081108 218447 * c(THEM4, TCHHL1, S100A10, S100A11, TCHH) 0.5 1 NA 1.00658801225574 185 0.250437209000927 2 2 0 -5.76537193694789 LTS-007 chr1 152081109 152760531 679423 * c(C1orf68, RPTN, LCE4A, FLG, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, CRCT1, TCHH, LCE3D) 0.424663948309762 55 0.0637920126302727 1.05842823438346 849 0.418543685054337 3 2 1 -6.73390726260614 LTS-007 chr1 152760532 152777462 16931 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 1.84382372816171 44 0.863929039202881 14 NA NA -5.76441324758999 LTS-007 chr1 152777463 153431561 654099 * c(PGLYRP3, LELP1, SPRR4, S100A7A, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PGLYRP4, PRR9, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.443329874188289 23 0.0371983785612886 1.02167201393696 592 0.274451133331065 2 1 1 -6.91502875864124 LTS-007 chr1 153431562 153509890 78329 * c(S100A5, S100A6, S100A7) 0.476 1 NA 0.855142364777642 21 0.25875082700581 0 0 0 -5.76471733048963 LTS-007 chr1 153509891 157062696 3552806 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, ILF2, NA NA NA NA NA NA NA NA NA LTS-007 INSRR, PEAR1, KCNN3, C1orf189, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, INTS3, SSR2, SCARNA4, SNORA80E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.43153566148822 124 0.0832948623499032 0.963478404095329 9654 0.201023270827979 2 1 1 -6.76557552980892 LTS-007 NA NA NA NA LTS-007 chr1 157062697 157483744 421048 * c(ETV3, CYCSP52, ETV3L, FCRL5) NA 0 NA 0.997574454948469 172 0.185780145176769 2 NA NA -5.76554631039349 LTS-007 chr1 157483745 157485561 1817 * FCRL5 0.497 1 NA 1.10638284073308 35 0.243397289089535 4 4 0 -5.764420532927 LTS-007 chr1 157485562 158587514 1101953 * c(FCRL1, FCRL3, OR10T2, OR6P1, OR10X1, OR10Z1, OR10R2, OR10K2, OR10K1, OR6Y1, KIRREL, LOC646268, SPTA1, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.415841862612986 53 0.0883138247391543 1.09192880311114 1375 0.504125907071596 4 3 1 -6.73697199157411 LTS-007 chr1 158587515 158587771 257 * SPTA1 NA 0 NA 0.878 1 NA NA NA NA NA LTS-007 chr1 158587772 158736215 148444 * c(OR6K6, OR6N1, OR6K3, SPTA1, OR6K2) 0.417848048739558 10 0.143074999757315 1.03170685589127 356 0.472101814316768 3 2 1 -6.73386598461721 LTS-007 chr1 158736216 158813819 77604 * c(OR6N1, MNDA, OR6N2) 0.459 1 NA 0.991271231595138 52 0.132605305488659 2 2 0 -5.76450935941384 LTS-007 chr1 158813820 161519828 2706009 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, NA NA NA NA NA NA NA NA NA LTS-007 CADM3, PEX19, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.442980212701872 96 0.0741033861716539 0.96550665545306 4882 0.254552510220254 2 1 1 -6.78683073505418 LTS-007 NA NA NA NA LTS-007 chr1 161519829 161559308 39480 * c(FCGR3A, FCGR2C) NA 0 NA 1.556 1 NA NA NA NA NA LTS-007 chr1 161559309 161601059 41751 * c(FCGR3B, HSPA7, FCGR2C) 0.327357390547311 10 0.0566623527769737 1.35302847232173 162 0.258887295066136 6 6 0 -6.73436243553432 LTS-007 chr1 161601060 161641191 40132 * c(FCGR2B, FCGR3B) NA 0 NA 1.077 1 NA NA NA NA NA LTS-007 chr1 161641192 171558516 9917325 * c(MIR921, MIR1295A, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, DDR2, NA NA NA NA NA NA NA NA NA LTS-007 PBX1, HSD17B7, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.437633772983885 159 0.0595995019184793 1.00148302472528 6427 0.255190966452072 2 1 1 -6.79368671143367 LTS-007 NA NA NA NA LTS-007 chr1 171558517 171561225 2709 * PRRC2C 0.368 1 NA 1.17294141657152 19 0.27142444265426 5 5 0 -5.76442809586955 LTS-007 chr1 171561226 172279909 718684 * c(MIR3120, DNM3OS, PRRC2C, DNM3, MYOC, METTL13, VAMP4) 0.127327753479316 9 0.234567036142004 1.00311008527806 433 0.214146490763818 3 3 0 -7.42478716236912 LTS-007 chr1 172279910 172381299 101390 * c(DNM3, PIGC) NA 0 NA 1.05178303222111 144 0.788150397387761 3 NA NA -5.76441485846733 LTS-007 chr1 172381300 172410814 29515 * c(DNM3, PIGC, C1orf105) 0.416 1 NA 0.864489331642514 51 0.151864544907625 0 0 0 -5.76518606898251 LTS-007 chr1 172410815 175097744 2686930 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.447404021414464 32 0.0400563615019412 0.950984419824696 1912 0.223040089677794 2 1 1 -6.98921264335628 LTS-007 chr1 175097745 178888140 3790396 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TNN, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, KIAA0040) 0.439971375144425 46 0.0781212485089622 1.08382349639362 1700 1.21492081936184 4 2 2 -6.76445851878406 LTS-007 chr1 178888141 211749367 32861227 * c(MIR181A1HG, GM140, GS1-279B7.1, MIR1231, MIR1278, MIR548F1, ZBED6, MIR4260, MIR3121, PCAT6, LHX4-AS1, MIR4735, MIR5191, RNU6-72P, ARPC5, PRG4, STX6, TIMM17A, LRRN2, IVNS1ABP, KDM5B, CFHR4, CFHR3, OCLM, IL24, CHI3L1, CHIT1, SLC26A9, TSEN15, FAM129A, AXDND1, ATP6V1G3, ZNF648, TEDDM1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, FAM163A, MFSD4A, NA NA NA NA NA NA NA NA NA LTS-007 PM20D1, SHISA4, CTSE, CD55, DENND1B, TDRD5, TOR1AIP2, DHX9, EIF2D, ELF3, FLJ23867, ELK4, F13B, PLEKHA6, KIF21B, NMNAT2, NFASC, COLGALT2, RGL1, CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, ASPM, TOR1AIP1, OPTC, ABL2, DIEXF, GLUL, LINC00303, LEMD1-AS1, LOC284578, LOC284581, LOC284648, SMG7-AS1, GPR25, UBE2T, IL19, CFH, CFHR1, CFHR2, MR1, HSD11B1, BRINP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RD3, KCNT2, RGSL1, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KISS1, LINC00272, C1orf53, TMEM81, LAD1, LAMB3, LAMC1, LAMC2, NA, APOBEC4, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, RGS21, LOC440704, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, NCF2, ATP2B4, G0S2, IL20, GLRX2, ADIPOR1, IER5, CDK18, PDC, UCHL5, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLA2G4A, PLXNA2, SWT1, LAX1, C1orf27, RALGPS2, KLHDC8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ETNK2, AVPR1B, LINC00862, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, LHX9, CAMK1G, SERTAD4-AS1, PTGS2, QSOX1, KIAA1614, PTPN7, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RNPEP, MGAT4EP, TOR3A, MIR205HG, RGS18, NUCKS1, ASCL5, SRGAP2C, SNRPE, SOAT1, TROVE2, SNORA77, CNTN2, TNNI1, TNNT2, TPR, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1E, SLC30A1, CACNA1S, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 NPHS2, BTG2, C1orf116, CDC73, EDEM3, TRAF3IP3, NPL, CFHR5, C1orf21, SHCBP1L, TRMT1L, NUAK2, DDX59, RASSF5, HMCN1, FCAMR, ACBD6, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, RGS8, SLC45A3, B3GALT2, RAB29, NAV1, LHX4, IGFN1, XPR1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, CEP350, ZC3H11A, SMG7, TMCC2, FAM20B, KIF14) 0.439463662276084 521 0.0735428716074501 0.987701311410544 24163 0.2421421952096 2 1 1 -6.76530492789962 LTS-007 NA NA NA NA LTS-007 chr1 211749368 213447689 1698322 * c(MIR3122, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.454732664438182 21 0.106007614281778 0.931175163980313 1499 0.201075989433945 1 1 0 -6.80354265799872 LTS-007 chr1 213447690 222742993 9295304 * c(LINC00538, LINC00210, BPNT1, CENPF, DUSP10, LYPLAL1, SPATA17, EPRS, ESRRG, RAB3GAP2, RNU5F-1, HLX, KCNK2, C1orf140, MIR194-1, MIR215, MARK1, RRP15, KCTD3, MARC2, GPATCH2, SLC30A10, IARS2, PROX1, SMYD2, PTPN14, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, USH2A, C1orf115, HHIPL2, TAF1A) 0.426598321249497 87 0.0799521525585375 1.03870786795896 3409 0.28173310267947 3 2 1 -6.76130064764033 LTS-007 chr1 222742994 222743875 882 * TAF1A NA 0 NA 0.881 1 NA NA NA NA NA LTS-007 chr1 222743876 227935444 5191569 * c(NA, MIR320B2, MIR4742, LEFTY1, SNAP47, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, FBXO28, LIN9, CNIH4, PYCR2, H3F3A, ZNF678, ITPKB, MIA3, STUM, CAPN8, LBR, FAM177B, ZNF847P, H3F3AP4, NVL, SUSD4, ENAH, PSEN2, COQ8A, ACBD3, AIDA, JMJD4, SRP9, LEFTY2, TLR5, TP53BP2, WDR26, CAPN2, MIXL1, CDC42BPA, DISP1, DEGS1, TAF1A, TMEM63A) 0.449211578127797 116 0.0556295757682002 0.941727439872331 4614 0.226573342469805 1 1 0 -6.94427295075367 LTS-007 chr1 227935445 227935538 94 * SNAP47 NA 0 NA 1.255 1 NA NA NA NA NA LTS-007 chr1 227935539 234452358 6516820 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR3620, MIR4666A, MIR4671, MIR4427, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, C1orf131, MRPL55, HIST3H2BB, SLC35F3, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GUK1, PRSS38, ARF1, FAM89A, KCNK1, TRIM67, TRIM17, EGLN1, MAP10, NUP133, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, WNT9A, C1orf35, TTC13, NA NA NA NA NA NA NA NA NA LTS-007 PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, WNT3A, HIST3H2A, URB2) 0.443398138480135 136 0.0658069629488326 0.986514954581484 5496 0.226756956771932 2 1 1 -6.79061728858804 LTS-007 NA NA NA NA LTS-007 chr1 234452359 234452457 99 * SLC35F3 NA 0 NA 0.88 1 NA NA NA NA NA LTS-007 chr1 234452458 236899015 2446558 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.44241111387342 87 0.0510042636497357 0.92158350338176 2237 0.218041334537499 1 1 0 -6.83728243491364 LTS-007 chr1 236899016 247462048 10563033 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, LINC01139, C1orf229, MAP1LC3C, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, EFCAB2, KMO, ACTN2, EXO1, ZNF670, CEP170 NA NA NA NA NA NA NA NA NA LTS-007 ) 0.434573853047737 83 0.0678662190267281 1.0251501007636 4812 0.29243251817141 3 2 1 -6.83054220254827 LTS-007 NA NA NA NA LTS-007 chr1 247462049 247462273 225 * character(0) 0.446 1 NA 1.09293391833216 5 0.447256637737217 3 3 0 -5.76441079851165 LTS-007 chr1 247462274 247769592 307319 * c(NLRP3, OR2B11, GCSAML, GCSAML-AS1, OR2W5, OR2G3, OR2G2, OR2C3, ZNF496) 0.286188446606943 9 0.224999444443759 1.07923998966331 447 0.693342141288403 7 7 0 -6.75885276858383 LTS-007 chr1 247769593 247921100 151508 * c(OR1C1, OR6F1, OR13G1, OR2G3) 0.482 1 NA 1.04359864966137 109 0.172191218806833 3 3 0 -5.76507773080515 LTS-007 chr1 247921101 249152577 1231477 * c(MIR3124, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR2W3, OR2T8, OR2T3, OR2T29, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L, OR2L5) 0.412243717547738 33 0.0847801412388824 1.05423453657499 1006 0.678274189600089 3 2 1 -6.74136968442031 LTS-007 chr1 249152578 249214134 61557 * c(PGBD2, ZNF692) NA 0 NA 0.930830777551648 83 0.153026721491541 1 NA NA -5.76511706225092 LTS-007 chr2 38824 1093965 1055142 * c(TMEM18, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2, FAM110C) 0.421 1 NA 0.932308044760311 365 0.191494708603533 1 1 0 -5.77333858071783 LTS-007 chr2 1093966 27549071 26455106 * c(OST4, MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PREB, PDIA6, MYCNOS, CENPA, CGREF1, RAB10, ADCY3, YWHAQ, EMILIN1, KLHL29, CMPK2, MBOAT2, CIB4, OSR1, TTC32, C2orf50, PQLC3, LINC01105, TCF23, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, MAPRE3, EFR3B, MYT1L, LPIN1, PUM2, NA NA NA NA NA NA NA NA NA LTS-007 NTSR2, ATP6V1C2, RNASEH1, DNAJC5G, IAH1, FLJ33534, TRIB2, GTF3C2, GRHL1, HADHA, HADHB, HPCAL1, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNK3, KCNS3, KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MPV17, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, ATRAID, NBAS, SF3B6, CPSF3, SNTG2, POMC, ATAD2B, TMEM214, SLC35F6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ASXL2, ADI1, ALLC, DPYSL5, TRIM54, KIDINS220, WDR35, RDH14, AGBL5, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, MYT1L-AS1, UCN, VSNL1, SLC30A3, PXDN, COLEC11, CAD, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, ABHD1, SELENOI, NCOA1, ASAP2, SLC5A6, TAF1B, RSAD2, ITGB1BP1, DRC1, NT5C1B, OTOF, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.430069063016451 195 0.0908977918578402 0.990833103268977 13256 0.240457605674484 2 1 1 -6.74556430339677 LTS-007 NA NA NA NA LTS-007 chr2 27549072 30953747 3404676 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, CAPN13, MRPL33, BRE, SNX17, SUPT7L) 0.441698442195011 57 0.0472451678981492 0.936787112216434 3550 0.191261929602205 1 1 0 -6.88417112100467 LTS-007 chr2 30953748 30954192 445 * CAPN13 NA 0 NA 1.235 1 NA NA NA NA NA LTS-007 chr2 30954193 36780059 5825867 * c(LOC100271832, LOC100288911, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13, FEZ2) 0.439907911816461 61 0.0868995054284882 1.01200296702387 2535 0.304387938313735 2 1 1 -6.78284509930069 LTS-007 chr2 36780060 36780175 116 * FEZ2 NA 0 NA 0.829 1 NA NA NA NA NA LTS-007 chr2 36780176 43939474 7159299 * c(SLC8A1-AS1, LINC01126, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, PLEKHH2, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, HAAO, PRKD3, GPATCH11, QPCT, EML4, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, VIT, HEATR5B, NDUFAF7, EIF2AK2, MTA3, THADA, ATL2, SRSF7, SLC8A1, SOS1, ZFP36L2, STRN, LOC728730, C1GALT1C1L, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L, HNRNPLL, FEZ2) 0.44826151776634 97 0.0422920778085072 0.932645557590122 4496 0.217319907909155 1 1 0 -7.01449462271412 LTS-007 chr2 43939475 45620278 1680804 * c(MIR548AD, LRPPRC, SIX2, PLEKHH2, LINC01121, DYNC2LI1, PPM1B, SRBD1, ABCG5, ABCG8, SIX3, SLC3A1, CAMKMT, PREPL) 0.458283791937548 33 0.049048677120517 1.02103036519725 1247 0.218491952908033 2 1 1 -7.05630628255474 LTS-007 chr2 45620279 45640279 20001 * SRBD1 NA 0 NA 0.956 1 NA NA NA NA NA LTS-007 chr2 45640280 48573898 2933619 * c(LINC01119, EPAS1, RHOQ, C2orf61, MSH6, FOXN2, TMEM247, LINC01118, EPCAM, MSH2, PIGF, SRBD1, PRKCE, KCNK12, TTC7A, MIR559, FBXO11, CALM2, MCFD2, ATP6V1E2, CRIPT, SOCS5) 0.428161756382492 34 0.117834017223267 0.95824596727106 1577 1.3158786026461 2 1 1 -6.73499290840919 LTS-007 chr2 48573899 48586181 12283 * FOXN2 NA 0 NA 1.071 1 NA NA NA NA NA LTS-007 chr2 48586182 54045945 5459764 * c(GTF2A1L, STON1, PPP1R21, FSHR, ERLEC1, STON1-GTF2A1L, FOXN2, LHCGR, CHAC2, ASB3, NRXN1) 0.434610185038515 24 0.0371060954405146 1.04721286905826 1243 0.255128296929917 3 2 1 -6.80555446617337 LTS-007 chr2 54045946 54076222 30277 * c(ERLEC1, ASB3) NA 0 NA 0.85 1 NA NA NA NA NA LTS-007 chr2 54076223 75278496 21202274 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, LOC100133985, DBIL5P2, DCTN1-AS1, MIR3126, MIR3682, BOLA3-AS1, INO80B-WBP1, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, MPHOSPH10, SMYD5, C1D, SEMA4F, CCT7, CCT4, STAMBP, B3GNT2, MTHFD2, PROKR1, GPR75, SNRNP27, CFAP36, TEX261, CCDC85A, WDR92, MRPL53, ADD2, C2orf73, CLHC1, AHSA2, M1AP, COMMD1, FBXO41, PUS10, LINC00309, ASPRV1, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, NA NA NA NA NA NA NA NA NA LTS-007 DOK1, EGR4, ALMS1P1, TET3, GKN2, APLF, TMEM17, SPRED2, EMX1, EFEMP1, AAK1, CEP68, PSME4, EXOC6B, EHBP1, WBP1, VAX2, CNRIP1, RAB11FIP5, GFPT1, NFU1, BMP10, ZNF638, HTRA2, LGALSL, ANXA4, HK2, TLX2, LOC339803, C2orf74, LOC339807, FIGLA, NOTO, PRORSD1P, TSPYL6, C2orf78, BOLA3, C2orf81, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, MIR216A, MIR217, MXD1, MDH1, MEIS1, MTIF2, OTX1, CD207, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 PCBP1, TPRKB, WDPCP, ASB3, PCYOX1, VPS54, PEX13, ATP6V1B1, BCL11A, PLEK, ETAA1, AFTPH, C2orf42, AUP1, FANCL, MOB1A, PPP3R1, FBXO48, NAGK, CCDC88A, GKN1, CYP26B1, POLE4, PNO1, RPL23AP32, RTN4, PELI1, PPP4R3B, SLC4A5, RAB1A, REL, RPS27A, RTKN, GMCL1, TTC31, LOC644838, PAPOLG, SLC1A4, SNRPG, SPR, SPTBN1, TACR1, TGFA, TIA1, ACTG2, MEIS1-AS3, UGP2, VRK2, XPO1, ALMS1, MOGS, OR7E91P, ANKRD53, DYSF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 INO80B, WDR54, FAM161A, ANTXR1, PRADC1, DUSP11, KIAA1841, MCEE, LOXL3, PCGF1, CCDC142, FAM136A, LBX2, PNPT1, NAT8, SFXN5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.430958386942897 180 0.102029264554706 0.962678471546821 13920 0.297086941081199 2 1 1 -6.81298550361225 LTS-007 NA NA NA NA LTS-007 chr2 75278497 84650845 9372349 * c(SNAR-H, MIR4264, MIR5000, REG3G, CTNNA2, DHFRP3, LRRTM1, FUNDC2P2, REG3A, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, SUCLG1, MRPL19) 0.420752907969646 17 0.116243753785387 1.07739318020202 751 0.295916746764246 3 2 1 -6.75187260414298 LTS-007 chr2 84650846 90044227 5393382 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, MIR4436A, MIR4780, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, CYTOR, TRABD2A, TMEM150A, SMYD1, DNAH6, TEX37, FABP1, RPIA, POLR1A, GGCX, SH2D6, LOC284950, LOC285074, FOXI3, C2orf68, MAT2A, RNF181, KRCC1, MRPL35, CHMP3, RETSAT, PTCD3, THNSL2, KDM3A, KCMF1, SFTPB, ANKRD36BP2, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, NA NA NA NA NA NA NA NA NA LTS-007 TMSB10, CD8A, CD8B, EIF2AK3) 0.439751103180256 120 0.0512927965741015 0.975583023557396 4128 0.321633094980108 2 1 1 -6.79984983487436 LTS-007 NA NA NA NA LTS-007 chr2 90044228 90248945 204718 * character(0) 0 1 NA 1.13854011581695 61 1.34815754945113 4 4 0 -5.76441173977245 LTS-007 chr2 90248946 91925073 1676128 * LOC654342 0.393729779519672 3 0.00416333199893227 1.07978134595492 34 0.405814145047774 5 4 1 -7.37755574540245 LTS-007 chr2 91925074 91925139 66 * character(0) 0.372 1 NA 2.053 1 NA NA NA NA NA LTS-007 chr2 91925140 91955375 30236 * character(0) 0.341982930080177 20 0.0751404824662655 1.38059894254914 72 0.87151246122498 8 7 1 -6.73332295602566 LTS-007 chr2 91955376 91955470 95 * character(0) NA 0 NA 1.4140261838434 3 0.0271354626519125 8 NA NA -5.76441815665642 LTS-007 chr2 95537183 95542363 5181 * c(TEKT4, LOC442028) 0.175 1 NA 1.08627303895532 42 0.389410967819737 3 3 0 -5.76442327510158 LTS-007 chr2 95542364 97643576 2101213 * c(MIR3127, ARID5A, TRIM43, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, KCNIP3, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, MRPS5, TRIM43B, FAHD2CP, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.429573896526426 58 0.0672767060163753 0.963144421413501 2822 0.218669032231856 2 1 1 -6.75237667947858 LTS-007 chr2 97643577 97749417 105841 * c(FAHD2B, FAM178B) 0.075 1 NA 0.989362013574548 49 0.290946360802031 2 2 0 -5.76442332803481 LTS-007 chr2 97749418 98350769 601352 * c(ACTR1B, COX5B, FAHD2B, ANKRD36, ANKRD36B, LINC01125, ZAP70) 0.310090272093585 18 0.13609676728475 1.01000671430498 300 0.937843251790474 6 6 0 -6.76458647716283 LTS-007 chr2 98350770 98372980 22211 * c(TMEM131, ZAP70) 0.473 1 NA 0.947508148575684 47 0.154927141122623 1 1 0 -5.7652514559746 LTS-007 chr2 98372981 113094793 14721813 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, TXNDC9, MERTK, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, FBLN7, TMEM182, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, VWA3B, CREG2, LINC00116, FHL2, TMEM131, LYG2, UNC50, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1R1, INPP4A, ZC3H6, SLC9A4, NA NA NA NA NA NA NA NA NA LTS-007 AFF3, LIMS1, SULT1C3, NPAS2, NPHP1, COA5, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, RGPD4-AS1, RFX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, TSGA10, NCK2, C2orf40, ZC3H8, ST6GAL2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.452503898619591 189 0.0606328681769713 0.966741555650534 8011 0.242605116854069 2 1 1 -6.92575730141839 LTS-007 NA NA NA NA LTS-007 chr2 113094794 113096857 2064 * ZC3H6 0.338 1 NA 1.00975908308006 19 0.406684095111149 2 2 0 -5.76441466383085 LTS-007 chr2 113096858 114719346 1622489 * c(MIR4782, ACTR3, RABL2A, RPL23AP7, TTL, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, FLJ42351, IL36G, FAM138B, PAX8-AS1, SLC20A1, RGPD8, PAX8, SLC35F5, POLR1B, CHCHD5, IL1F10, DDX11L2) 0.418194637233389 44 0.0811641903354665 0.955148686088366 1666 0.289753460294898 2 1 1 -6.74619863623166 LTS-007 chr2 114719347 137852726 23133380 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, LOC100499194, MIR3679, LOC100507600, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DARS, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, DPP10-AS1, NA NA NA NA NA NA NA NA NA LTS-007 LOC389033, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LINC01191, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, TMEM185B, SAP130, MZT2B, MAP3K19, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SFT2D3, LINC01101, MARCO, DDX18, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.41723845831856 153 0.0982935153155017 1.00134600723157 8774 0.268138637906718 2 1 1 -6.78549381252064 LTS-007 NA NA NA NA LTS-007 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.255 1 NA NA NA NA NA LTS-007 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.445434135349623 23 0.0306295602396493 1.09161848959464 980 0.313929563528816 4 2 2 -7.08243710880309 LTS-007 chr2 143642881 163174517 19531637 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, TNFAIP6, NA NA NA NA NA NA NA NA NA LTS-007 PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, KYNU, ACVR1, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.437722140073262 94 0.0855161352026889 0.990461645482499 7332 0.242744988555346 2 1 1 -6.75650448015482 LTS-007 NA NA NA NA LTS-007 chr2 163174518 170068752 6894235 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, NOSTRIN, XIRP2, SLC38A11, COBLL1, CERS6, GCA, GALNT3, STK39, GRB14, LRP2, FIGN, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, TTC21B, CSRNP3, ABCB11, B3GALT1, KCNH7) 0.421498566172814 53 0.104861370922548 1.05019315177749 3730 0.508043234775537 3 2 1 -6.73420481704096 LTS-007 chr2 170068753 170070215 1463 * LRP2 NA 0 NA 0.879 1 NA NA NA NA NA LTS-007 chr2 170070216 179318171 9247956 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, LRP2, MIR10B, NA NA NA NA NA NA NA NA NA LTS-007 LINC01124, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDK1, ZAK, ATP5G3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.405715608467596 64 0.131399630316155 0.991526889457461 6468 0.238753844651582 2 2 0 -6.73728297775414 LTS-007 NA NA NA NA LTS-007 chr2 179318172 190732692 11414521 * c(MIR548N, MIR1258, MIR1245A, MIR3129, MIR3606, TTN-AS1, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, FRZB, CCDC141, SLC40A1, ITGA4, ITGAV, CERKL, FSIP2, NEUROD1, DFNB59, PDE1A, GULP1, FKBP7, PMS1, DNAJC10, ASNSD1, ZC3H15, CWC22, OSGEPL1, PLEKHA3, SSFA2, MIR561, TFPI, TTN, WDR75, SESTD1, ZNF804A, ORMDL1) 0.426703372626164 98 0.0766915643640382 1.0456357870398 7949 0.299503844964875 3 2 1 -6.74757107754298 LTS-007 chr2 190732693 190738243 5551 * PMS1 NA 0 NA 0.769 1 NA NA NA NA NA LTS-007 chr2 190738244 203807721 13069478 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, NA NA NA NA NA NA NA NA NA LTS-007 PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.436416877621663 66 0.0730721966328228 0.945082454887016 7839 0.236810443053182 1 1 0 -6.93781655084508 LTS-007 NA NA NA NA LTS-007 chr2 203807722 216300802 12493081 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA LTS-007 NDUFS1, INO80D, CYP20A1, PTH2R, ZDBF2, BARD1, RPE, SNORA41, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.429890859418482 125 0.0779765953306172 1.02429951680824 7162 0.258193728942011 3 2 1 -6.8618731809153 LTS-007 NA NA NA NA LTS-007 chr2 216300803 217288388 987586 * c(PKI55, SMARCAL1, MREG, PECR, MARCH4, LINC00607, XRCC5, TMEM169) 0.425575531732792 9 0.15191618668785 0.932030599702626 417 0.209260010968544 1 1 0 -6.74030765094805 LTS-007 chr2 217288389 217303087 14699 * SMARCAL1 0.478 1 NA 0.968594270278076 21 0.254005539872095 2 2 0 -5.76444973352583 LTS-007 chr2 217303088 220249252 2946165 * c(LOC100129175, MIR3131, ABCB6, ARPC2, ZFAND2B, AAMP, CRYBA2, SLC23A3, LINC00608, GPBAR1, CYP27A1, DNPEP, CFAP65, PNKD, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, NA NA NA NA NA NA NA NA NA LTS-007 TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TTLL4) 0.44169078085861 69 0.0474319811822644 0.960035656115968 4586 0.209775410451831 2 1 1 -6.85221688244351 LTS-007 NA NA NA NA LTS-007 chr2 220249253 220250112 860 * DNPEP NA 0 NA 1.108 1 NA NA NA NA NA LTS-007 chr2 220250113 222431507 2181395 * c(MIR4268, MIR3132, SPEG, STK11IP, TMEM198, DES, EPHA4, OBSL1, DNPEP, GMPPA, INHA, ASIC4, SLC4A3, CHPF) 0.465876216059116 8 0.0328869817926269 1.02420154350405 1362 0.191594371614126 2 1 1 -7.66640360469574 LTS-007 chr2 222431508 223065404 633897 * c(EPHA4, PAX3) 0.468 1 NA 1.0055210355796 39 0.308998309810243 2 2 0 -5.76606652123894 LTS-007 chr2 223065405 230312194 7246790 * c(FARSB, MIR4439, MIR5702, MIR5703, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, CCDC140, DAW1, ACSL3, KCNE4, AGFG1, IRS1, PAX3, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER) 0.448458733516114 67 0.0353210960777276 1.00273315441101 3375 0.721095831134956 2 1 1 -7.03360441284929 LTS-007 chr2 230312195 242836535 12524341 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, FBXO36, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, NA NA NA NA NA NA NA NA NA LTS-007 ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 UGT1A3, KIF1A, ATG16L1, PPP1R7, USP40, HJURP, HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SP100, SPP2, SCARNA6, SCARNA5, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.442068419187524 302 0.0796916560141837 0.952925440703899 12150 0.346729761736933 2 1 1 -6.83606100403651 LTS-007 NA NA NA NA LTS-007 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.933652205015852 27 0.155754363189034 1 NA NA -5.76731522197524 LTS-007 chr3 239351 1215013 975663 * c(CHL1, CNTN6) 0.439 1 NA 1.07657691829707 223 0.17024379229295 3 3 0 -5.76980758432998 LTS-007 chr3 1215014 4461872 3246859 * c(CNTN4-AS2, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.413161117229708 16 0.116863292640019 1.02885197855805 720 0.269940687164083 3 2 1 -6.75901966121491 LTS-007 chr3 4461873 5255126 793254 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.397384929645179 10 0.0595553897178454 0.919618280256046 656 0.208570183145253 2 2 0 -6.80583778034981 LTS-007 chr3 5255127 8794985 3539859 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.414265203474957 30 0.139726070268378 1.08992081475357 564 0.394967416798926 3 2 1 -6.74614902519355 LTS-007 chr3 8794986 10367222 1572237 * c(GHRLOS, SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, FANCD2OS, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, GHRL, SETD5, EMC3, BRK1, RAD18, CIDEC, SEC13, MTMR14, VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, TATDN2, SRGAP3) 0.436287602691786 58 0.0739027417962898 0.941506405338316 2913 0.251946152926461 1 1 0 -6.77309944106045 LTS-007 chr3 10367223 10367226 4 * ATP2B2 NA 0 NA 1.073 1 NA NA NA NA NA LTS-007 chr3 10367227 51434235 41067009 * c(MIR885, ACVR2B-AS1, NRADDP, MKRN2OS, LOC100132146, FGD5P1, BSN-AS2, PDCD6IP, PRSS46, MIR1226, MIR711, MIR4270, MIR4271, MIR3714, FGD5-AS1, SH3BP5-AS1, KRBOX1, MIR4793, MIR4787, MIR4791, MIR548AC, MIR4443, MIR4792, MIR4442, RBM5-AS1, MIR5193, SNRK-AS1, SGO1-AS1, SLC6A1-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, CTDSPL, EIF1B, TRAIP, ARIH2, CRTAP, ATG7, NPRL2, CXCR6, CSPG5, ARPP21, NA NA NA NA NA NA NA NA NA LTS-007 CCR9, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, CMTM7, TREX1, SCN11A, TUSC2, OSBPL10, CISH, ZNF501, LRRC3B, GALNT15, CCR1, CCR3, CCR4, CCR5, CCR8, ACKR2, COL7A1, KCNH8, LYZL4, KLHL40, TRIM71, CHCHD4, TMEM42, METTL6, TAMM41, LSMEM2, CTNNB1, SGO1, PP2D1, EFHB, CCDC12, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, FGD5, CX3CR1, CYP8B1, DAG1, DAZL, XIRP1, DOCK3, CELSR3, TTC21A, KLHDC8B, STT3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FBLN2, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, CAND2, CLASP2, GPD1L, RFTN1, NBEAL2, NUP210, PLCL2, ANKRD28, KLHL18, LARS2, CAPN7, MKRN2, NAT6, ZNF620, FBXL2, CNOT10, TMEM158, NDUFAF3, ALS2CL, TMIE, MYRIP, PTPN23, HIGD1A, SUSD5, HACL1, GLB1, LSM3, RBMS3, AMT, GNAI2, GNAT1, GOLGA4, XCR1, NKIRAS1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, KIF9-AS1, LINC00606, LINC00620, DPH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 GPX1, SETD2, PRSS50, RBM15B, GMPPB, ACAA1, HRH1, APEH, HYAL1, CCDC36, LOC339862, C3orf35, GADL1, PRSS42, ZNF860, COL6A4P1, TPRXL, ZNF445, IMPDH2, ITGA9, TOPAZ1, C3orf62, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, LAMB2, VENTXP7, RPSA, LTF, MIR128-2, MIR138-1, MIR191, MIR26A1, MAP4, MLH1, MOBP, EIF1B-AS1, TMEM89, MST1, MST1R, MYD88, MYL3, NKTR, ATP2B2, MIR425, VILL, ABHD5, DYNC1LI1, C3orf18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SS18L2, CCDC174, SHISA5, ZDHHC3, ZMYND10, TMA7, ZNF589, HEMK1, IP6K2, NCKIPSD, PFKFB4, PLCD1, PLXNB1, LZTFL1, PPARG, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, CMTM6, SLC25A38, ULK4, OXSM, ANO10, DALRD3, TMEM40, PRKAR2A, NGLY1, ZKSCAN7, KIF15, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, QARS, RAB5A, RAF1, RARB, SNORA62, RPL15, RPL32, SATB1, SCN5A, SCN10A, RNF123, SEMA3F, RBSN, KIF9, AZI2, TMPPE, MRPS25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LIMD1-AS1, THRB-AS1, LINC00693, SPINK8, ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, SLC26A6, SLC6A1, SLC6A6, SLC6A11, SMARCC1, STAC, SYN2, BTD, MIR563, MIR564, TCTA, TDGF1, TGM4, TGFBR2, THRB, TIMP4, CLEC3B, TOP2B, NR2C2, FAM198A, CCR2, UBA7, UBE2E1, UBE2E2, UBP1, USP4, UQCRC1, VIPR1, WNT7A, XPC, ZNF35, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, TMEM43, LRRC2, FYCO1, CCDC51, ZNF385D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 HDAC11, TSEN2, GRIP2, CAMP, COLQ, EOMES, RTP3, LRRC2-AS1, HYAL3, C3orf20, ATRIP, NICN1, MON1A, POMGNT2, EAF1, DCLK3, HYAL2, CCK, KAT2B, BSN, LIMD1, UCN2, CCRL2, RPL14, SEC22C, ZNF502, LRRFIP2, OXNAD1, CACNA2D2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SH3BP5, SLC4A7, ENTPD3, VGLL4, DCAF1, TBC1D5, IP6K1, EPM2AIP1, TRANK1, IQSEC1, CDC25A, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.437607211732121 508 0.0584943213310483 0.978379370174608 31849 0.355897067694683 2 1 1 -6.77997206575372 LTS-007 NA NA NA NA LTS-007 chr3 51434236 51450757 16522 * c(RBM15B, DCAF1) 0 1 NA 1.13053180200286 45 0.667320665577705 4 4 0 -5.76441024094222 LTS-007 chr3 51450758 52456885 1006128 * c(LINC00696, PARP3, IQCF4, ABHD14A-ACY1, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DUSP7, ALAS1, RAD54L2, ABHD14A, POC1A, DNAH1, GRM2, IQCF2, IQCF5, IQCF3, MIRLET7G, MIR135A1, IQCF6, TEX264, PHF7, TLR9, PCBP4, RPL29, WDR82, BAP1, ABHD14B, RRP9, ACY1, DCAF1) 0.29915894645922 9 0.238171040314402 0.991732054696008 2138 0.220430154830481 2 2 0 -6.85771265851562 LTS-007 chr3 52456886 52476694 19809 * c(PHF7, SEMA3G) 0.433 1 NA 1.00503135343534 134 0.166679986768065 2 2 0 -5.76457966194884 LTS-007 chr3 52476695 53919133 1442439 * c(SNORD19B, TMEM110-MUSTN1, NISCH, STAB1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, SMIM4, SFMBT1, PBRM1, CHDH, IL17RB, PRKCD, DCP1A, GLT8D1, SEMA3G, NT5DC2, NEK4, SNORD19, SNORD69, TKT, TNNC1, CACNA1D, RFT1, ACTR8) 0.43285409125795 111 0.0507068900425642 0.9849734134436 2841 0.27489390629633 2 1 1 -6.75589750995575 LTS-007 chr3 53919134 55733610 1814477 * c(CACNA2D3-AS1, ERC2, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, ESRG) 0.460861155486476 16 0.0362467814663132 1.10877472510628 439 0.279417102600649 4 2 2 -7.33350755576441 LTS-007 chr3 55733611 55768805 35195 * ERC2 NA 0 NA 0.837 1 NA NA NA NA NA LTS-007 chr3 55768806 58899403 3130598 * c(MIR3938, ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.441164501322603 88 0.0628201299776395 0.972256794606025 3157 0.218050064456282 2 1 1 -6.79005210481507 LTS-007 chr3 58899404 58899422 19 * C3orf67 NA 0 NA 1.092 1 NA NA NA NA NA LTS-007 chr3 58899423 65355591 6456169 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.416751499441185 35 0.11025861120356 1.07124314816853 1722 0.356118755317064 3 2 1 -6.73846669853732 LTS-007 chr3 65355592 65357528 1937 * MAGI1 NA 0 NA 0.701 1 NA NA NA NA NA LTS-007 chr3 65357529 74419157 9061629 * c(MIR1284, MIR3136, MIR4272, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.422762221451563 45 0.13199491878803 0.994402248187085 2750 0.28407705008524 2 1 1 -6.73882113616614 LTS-007 chr3 74419158 74420309 1152 * CNTN3 NA 0 NA 1.252 1 NA NA NA NA NA LTS-007 chr3 74420310 75386337 966028 * CNTN3 0.494 1 NA 1.1759340879126 31 0.222401492027176 5 5 0 -5.77231485275082 LTS-007 chr3 75386338 75679988 293651 * c(MIR1324, FAM86DP) 0.389 1 NA 1.25815609036245 3 0.403628955023464 6 6 0 -5.76475386479345 LTS-007 chr3 75679989 75786261 106273 * c(ZNF717, MIR1324) 0.315551588222065 137 0.10054749811614 1.48566316994306 236 0.839319221065706 10 9 1 -6.73401978260189 LTS-007 chr3 75786262 75786265 4 * ZNF717 NA 0 NA 0.913 1 NA NA NA NA NA LTS-007 chr3 75786266 75986686 200421 * c(ZNF717, ROBO2) 0.338299304377792 88 0.0729203592138628 1.18051537712976 156 0.470118682153957 5 5 0 -6.73925638331596 LTS-007 chr3 75986687 75986794 108 * ROBO2 0.396 1 NA 1.18684144836479 3 0.105765463802384 5 5 0 -5.76441174612824 LTS-007 chr3 75986795 88206531 12219737 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.448942104193217 37 0.082832440584672 1.01627454963416 1429 0.299161581224873 2 1 1 -6.86946774907742 LTS-007 chr3 88206532 90283666 2077135 * c(EPHA3, C3orf38) NA 0 NA 1.04459517776374 213 0.209451171834724 3 NA NA -5.76981745768887 LTS-007 chr3 93591838 93593119 1282 * PROS1 0.487 1 NA 0.942922076098472 25 0.341525753055315 1 1 0 -5.76441778734578 LTS-007 chr3 93593120 97365074 3771955 * c(MTHFD2P1, ARL13B, DHFR2, LINC00879, EPHA6, STX19, PROS1, NSUN3) 0.308760019263678 9 0.145958422542555 1.03549243002912 487 0.347354964967754 3 3 0 -6.91616587621222 LTS-007 chr3 97365075 97806944 441870 * c(CRYBG3, GABRR3, EPHA6, OR5AC2, ARL6, MINA) 0.472 1 NA 0.974574164125556 477 0.247171950700691 2 2 0 -5.7649224677095 LTS-007 chr3 97806945 130110249 32303305 * c(ZBTB11-AS1, FAM86JP, LOC100129550, ZBTB20-AS1, MIR548I1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MYLK-AS1, TMCC1-AS1, ISY1-RAB43, MIR4796, MIR4446, COX17, MIR5002, MIR5092, ALDH1L1-AS2, CFAP44-AS1, ALDH1L1-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, ALDH1L1, PDIA5, ADCY5, HHLA2, FSTL1, FILIP1L, MGLL, TXNRD3, OSBPL11, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, DCBLD2, TPRA1, UROC1, FAM172BP, RPL32P3, NA NA NA NA NA NA NA NA NA LTS-007 H1FOO, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, ROPN1B, C3orf22, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, DRD3, ALG1L, HACD2, TIGIT, USF3, ALCAM, COPG1, MYH15, TMCC1, PLXND1, LINC01565, ZDHHC23, NUP210P1, COL6A5, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, GATA2, OR5K1, OR5H1, FAM162A, SEC22A, ZBTB11, MORC1, GOLGB1, GP9, GPR15, TUSC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LINC00636, DNAJB8-AS1, RABL3, SLC9C1, PDCL3P4, ILDR1, ACAD9, KLF15, GTPBP8, TAGLN3, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, RAB43, H1FX-AS1, DUBR, TMPRSS7, CD200R1L, LNP1, CFAP100, ITGB5, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, MCM2, CD200, MYLK, NDUFB4, ARGFX, PODXL2, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, PLXNA1, SEMA5B, WDR5B, PARP14, GRAMD1C, ROPN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SIDT1, TRMT10C, SLC41A3, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, IFT122, TBC1D23, CFAP44, EAF2, CLDND1, MUC13, HMCES, NIT2, POGLUT1, BBX, PCNP, SENP7, ISY1, HEG1, KIAA1257, ARHGAP31, CCDC191, KIAA1524, RHO, EEFSEC, RPL24, RPN1, POPDC2, NFKBIZ, ATG3, TMEM30CP, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLC15A2, LINC00488, SNORA7B, MIR548A3, MIR567, MIR568, TRH, FAM86HP, UPK1B, UMPS, CNBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ZNF80, ZNF148, RAB7A, OR5H6, OR5H2, ZXDC, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, EFCC1, NAA50, ABTB1, OR5AC2, PARP9, CHCHD6, CMSS1, SLC12A8, CASR, RETNLB, CCDC54, ADGRG7, DIRC2, RUVBL1, CBLB, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, PHLDB2, LOC90246, EFCAB12, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.44190795762499 432 0.061831907782073 0.993840661058798 20315 0.311130857348708 2 1 1 -6.80414339758342 LTS-007 NA NA NA NA LTS-007 chr3 130110250 140866542 10756293 * c(NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, PISRT1, NUDT16P1, DZIP1L, EPHB1, MRAS, DNAJC13, COL6A5, ANAPC13, ARMC8, NPHP3, ATP2C1, TRIM42, ASTE1, PIK3R4, KY, LOC339874, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, IL20RB, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, BPESC1, NA NA NA NA NA NA NA NA NA LTS-007 RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, SNORA58, TF, PRR23A, NEK11, UBA5, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, SPSB4, COPB2) 0.422871924970572 81 0.104041735452891 1.05306821946307 6573 0.237383956722011 3 2 1 -6.73680299373898 LTS-007 NA NA NA NA LTS-007 chr3 140866543 160939452 20072910 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, TRIM59, NA NA NA NA NA NA NA NA NA LTS-007 GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, IQCJ, HLTF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, SPSB4, PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.434037652088429 201 0.0652876669267352 1.00743602288502 9919 0.264946633299912 2 1 1 -6.83443666992776 LTS-007 NA NA NA NA LTS-007 chr3 160939453 168833766 7894314 * c(LOC101243545, PDCD10, OTOL1, WDR49, SPTSSB, MECOM, SLITRK3, GOLIM4, NMD3, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, MIR551B, ZBBX, EGFEM1P) 0.426081465742708 23 0.134674677555595 1.09690537932857 1244 0.541674336463425 4 2 2 -6.75023539617508 LTS-007 chr3 168833767 172766729 3932963 * c(LOC100128164, LRRC34, ECT2, RPL22L1, MECOM, TNIK, GHSR, GPR160, LRRIQ4, SAMD7, TMEM212, CLDN11, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, FNDC3B, SKIL, SLC2A2, MIR569, TERC, SEC62, LRRC31, PHC3, SPATA16, ACTRT3, TNFSF10) 0.451029331570851 35 0.0392679226328458 0.997205412889473 2618 0.228054641107903 2 1 1 -7.03203244884875 LTS-007 chr3 172766730 172766777 48 * SPATA16 0.435 1 NA 1.807 1 NA NA NA NA NA LTS-007 chr3 172766778 181431484 8664707 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, DNAJC19, TTC14, NLGN1, NAALADL2, KCNMB3, CCDC39, SOX2-OT, NDUFB5, ZNF639, PEX5L, PIK3CA, MFN1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, FXR1, SPATA16, ACTL6A, USP13) 0.418846951957762 50 0.101565613657138 1.07755564040784 2474 0.318122132829159 3 2 1 -6.74896398081581 LTS-007 chr3 181431485 183753930 2322446 * c(LINC00888, ABCC5, ABCC5-AS1, HTR3D, MCF2L2, ATP11B, LAMP3, SOX2-OT, FLJ46066, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, SOX2, MAP6D1, B3GNT5, KLHL6) 0.461478024586447 19 0.039965921155419 0.96859495369206 1718 0.224513915480291 2 1 1 -7.25279122982661 LTS-007 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.044 1 NA NA NA NA NA LTS-007 chr3 183754123 194116057 10361935 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, NA NA NA NA NA NA NA NA NA LTS-007 ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.423780381198822 176 0.0880892986999814 1.02287298599353 7431 0.363951682201906 3 2 1 -6.78957970221724 LTS-007 NA NA NA NA LTS-007 chr3 194116058 195377654 1261597 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.412206965102179 25 0.0658971926564402 0.935184504163723 1005 0.258396802150488 1 1 0 -6.75217382792311 LTS-007 chr3 195377655 195391057 13403 * SDHAP2 NA 0 NA 1.283 1 NA NA NA NA NA LTS-007 chr3 195391058 195475926 84869 * c(MUC20, MUC4, MIR570, SDHAP2) 0.289767780648146 10 0.11598682875415 1.52074402181517 137 2.53275972197382 8 8 0 -6.73353389288146 LTS-007 chr3 195475927 195475989 63 * MUC4 0.461 1 NA 0.639 1 NA NA NA NA NA LTS-007 chr3 195475990 197766946 2290957 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.390641876499193 51 0.0906951627652744 0.938530929793173 3101 0.22875006812589 2 2 0 -6.81782089989419 LTS-007 chr3 197766947 197770512 3566 * LMLN NA 0 NA 1.0094391151423 65 0.289873394943644 2 NA NA -5.76442514580373 LTS-007 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.223 1 NA 0.98740710752379 13 0.216886624051156 2 2 0 -5.76441058309093 LTS-007 chr4 60336 481678 421343 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.382945191550061 14 0.129177639850566 0.855823914479399 349 0.223452320820066 0 0 0 -6.79299516418832 LTS-007 chr4 481679 492998 11320 * c(ZNF721, PIGG) NA 0 NA 1.047 1 NA NA NA NA NA LTS-007 chr4 492999 3227458 2734460 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, FAM53A, DGKQ, FGFR3, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129 NA NA NA NA NA NA NA NA NA LTS-007 ) 0.443595588598987 112 0.0633407060668339 0.959481923696825 4896 0.233872319530925 2 1 1 -6.81713910513425 LTS-007 NA NA NA NA LTS-007 chr4 3227459 3591271 363813 * c(DOK7, LINC00955, HTT, HGFAC, MSANTD1, LRPAP1, RGS12) 0.431464259354565 43 0.0522891695631047 1.03171481320884 791 0.294705151058794 3 2 1 -6.75342830991439 LTS-007 chr4 3591272 3591299 28 * LINC00955 0.462 1 NA 1.15337329464373 3 0.0749688824335359 4 4 0 -5.76441104971697 LTS-007 chr4 3591300 4228187 636888 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.266390685120014 9 0.159378044633228 1.10461024173007 91 0.599095176516245 7 7 0 -6.8192891430757 LTS-007 chr4 4228188 4239516 11329 * c(OTOP1, TMEM128) 0.479 1 NA 0.925811353081616 11 0.204242146839125 1 1 0 -5.76445063128933 LTS-007 chr4 4239517 36068047 31828531 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR4275, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, ARAP2, CPEB2, EVC2, PACRGL, CRMP1, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, NA NA NA NA NA NA NA NA NA LTS-007 FBXL5, NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, RBPJ, KCNIP4-IT1, SMIM20, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, PCDH7, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, TBC1D19, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, CCKAR, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.443359823775126 277 0.0596700341499963 0.996269159704703 9631 0.247420684572142 2 1 1 -6.84105170640272 LTS-007 NA NA NA NA LTS-007 chr4 36068048 40814409 4746362 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.439618611549715 93 0.0569840409734708 0.919196775945323 3190 0.223997264742851 1 1 0 -6.79811409666875 LTS-007 chr4 40814410 49063872 8249463 * c(UCHL1-AS1, ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, APBB2, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, UCHL1, CWH43, PHOX2B) 0.45240716182661 112 0.0583557791436243 0.996864858394454 4352 0.254729051180442 2 1 1 -6.89279483274918 LTS-007 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.881577818991105 5 0.0771589268976701 1 NA NA -5.76443611564208 LTS-007 chr4 52709193 52714511 5319 * DCUN1D4 0.39 1 NA 1.06665726272053 17 0.295153985234826 3 3 0 -5.76441197980291 LTS-007 chr4 52714512 56238886 3524375 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.451570677229746 24 0.0582363375779483 1.03479110827268 1662 0.243415038297398 3 2 1 -6.90083722460094 LTS-007 chr4 56238887 57887175 1648289 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.441196765774546 30 0.0885993500404275 0.946540286755212 1535 0.21028530792628 2 1 1 -6.79407547169366 LTS-007 chr4 57887176 57888303 1128 * POLR2B NA 0 NA 1.585 1 NA NA NA NA NA LTS-007 chr4 57888304 66535417 8647114 * c(EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134, POLR2B) 0.439781593380972 6 0.0256807320767925 1.10178296452307 613 0.246462679641452 4 2 2 -7.04665257529039 LTS-007 chr4 66535418 66535528 111 * EPHA5 NA 0 NA 0.958 1 NA NA NA NA NA LTS-007 chr4 66535529 68906584 2371056 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.420505943133223 27 0.0497955077551439 0.990523856361445 749 0.265084295863915 2 1 1 -6.73504154907391 LTS-007 chr4 68906585 68907425 841 * UBA6-AS1 NA 0 NA 0.335236910107615 40 0.268552901487651 0 NA NA -5.77026172143032 LTS-007 chr4 68907426 75972371 7064946 * c(FTLP10, CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, FDCSP, ANKRD17, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, MTHFD2L, MUC7, PF4, PF4V1, UGT2B28, PPBP, ODAM, UBA6-AS1, LOC550113, UTP3, UGT2A2, NA NA NA NA NA NA NA NA NA LTS-007 OPRPN, CXCL6, CXCL5, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.427264191156918 86 0.105247947752704 1.02975538215119 4003 0.279864401125031 3 2 1 -6.77686975284484 LTS-007 NA NA NA NA LTS-007 chr4 75972372 89911676 13939305 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, FAM13A, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DMP1, DSPP, FGF5, SEC31A, WDFY3, CNOT6L, C4orf22, PARM1, RCHY1, NAP1L5, GK2, NAAA, COQ2, FAM13A-AS1, ANXA3, HNRNPD, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, CXCL10, WDFY3-AS2, NA NA NA NA NA NA NA NA NA LTS-007 ART3, CXCL9, AFF1, LINC00575, LOC441025, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PKD2, NUDT9, NUP54, PPEF2, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, CXCL11, MRPL1, BMP3, SPP1, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, USO1, HERC3, STBD1, CDKL2, CCNG2, ABCG2, SCARB2, G3BP2, HNRNPDL) 0.430533235595253 198 0.0856618368335575 0.965409726660536 9155 0.25204260529626 2 1 1 -6.79158904652153 LTS-007 NA NA NA NA LTS-007 chr4 89911677 98865141 8953465 * c(STPG2-AS1, FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.43654565943407 28 0.0442232790812533 1.05874545917041 1746 1.07439955211289 3 2 1 -6.79529339479183 LTS-007 chr4 98865142 144794616 45929475 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, MGAT4D, SPATA5, BBS12, FREM3, SGMS2, SYNPO2, EGF, EIF4E, ELF2, NA NA NA NA NA NA NA NA NA LTS-007 ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ZNF330, LINC01091, RPL34-AS1, STPG2, ANK2, GYPE, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, LINC01061, C4orf3, MAD2L1, MANBA, MGST2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, TET2, ARHGEF38, MCUB, BANK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, MAML3, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, TNRC18P1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RAB33B, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, LAMTOR3, PDE5A, INPP4B, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.441547668035708 337 0.0650865767264891 0.978929694238197 16721 0.460590414843339 2 1 1 -6.78702115312491 LTS-007 NA NA NA NA LTS-007 chr4 144794617 144801671 7055 * GYPE 0.25 1 NA 1.10341006705212 20 0.349171722946265 4 4 0 -5.76443445362679 LTS-007 chr4 144801672 146033407 1231736 * c(ANAPC10, GYPA, GYPB, GYPE, ABCE1, HHIP, HHIP-AS1) 0.316374073112766 10 0.209823762026876 1.02993043431053 443 0.470920195387702 4 4 0 -6.79729709532114 LTS-007 chr4 146033408 146055117 21710 * c(OTUD4, ABCE1) 0.449 1 NA 0.909581562485287 83 0.185779624977323 1 1 0 -5.76441152653224 LTS-007 chr4 146055118 155471449 9416332 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, TMEM184C, RPS3A, SFRP2, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.437241385393113 61 0.0884461955552455 0.960681332585661 4129 0.254117786478828 2 1 1 -6.80384030591213 LTS-007 chr4 155471450 159176408 3704959 * c(CTSO, RBM46, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, PLRG1, TMEM144, PDGFC, TDO2, MAP9, LRAT) 0.424011384158675 40 0.0813496686517136 1.06192907427879 1686 1.38203597832755 3 2 1 -6.73332708112686 LTS-007 chr4 159176409 159200401 23993 * TMEM144 NA 0 NA 0.975 1 NA NA NA NA NA LTS-007 chr4 159200402 184614909 25414508 * c(CLDN24, MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, AGA, C4orf46, TMEM192, RWDD4, ETFDH, PALLD, ANP32C, FBXO8, GK3P, GPM6A, LINC01098, HMGB2, HPGD, ING2, LOC389247, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NPY5R, SPOCK3, AADAT, GALNT7, CLDN22, PPID, HPF1, NA NA NA NA NA NA NA NA NA LTS-007 MARCH1, NEIL3, TMA16, DDX60, CDKN2AIP, TENM3, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, TRAPPC11, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, NAF1, HAND2, RAPGEF2, MFAP3L) 0.430958995901702 125 0.0778348126773369 0.996022494829082 6396 0.399354496655388 2 1 1 -6.75074267431058 LTS-007 NA NA NA NA LTS-007 chr4 184614910 184615065 156 * TRAPPC11 NA 0 NA 0.839 1 NA NA NA NA NA LTS-007 chr4 184615066 186083317 1468252 * c(MIR3945, LINC01093, ENPP6, PRIMPOL, ACSL1, SLC25A4, IRF2, HELT, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3) 0.447264336209929 16 0.0372911405921925 0.902798690451306 850 0.254121567402675 1 1 0 -7.01037606809102 LTS-007 chr4 186083318 190946092 4862775 * c(ZFP42, TRIML2, F11, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, LOC339975, TRIML1, ANKRD37, KLKB1, LINC01060, C4orf47, MTNR1A, UFSP2, LRP2BP, CFAP97, FLJ38576, TLR3, SNX25, SORBS2) 0.409940812763086 70 0.0766010827594309 1.00620191586805 2019 0.259489493843471 2 2 0 -6.75238393548757 LTS-007 chr4 190946093 190981567 35475 * character(0) NA 0 NA 1.20521550993249 21 0.443460499126714 5 NA NA -5.76441034491972 LTS-007 chr5 140347 163205 22859 * PLEKHG4B 0.422 1 NA 0.896502229869689 67 0.177164214083138 1 1 0 -5.7645277182467 LTS-007 chr5 163206 535994 372789 * c(PDCD6, MIR4456, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, AHRR, SDHA, SLC9A3) 0.426499441963538 53 0.0738197899842831 0.938725538160316 833 0.255699368861414 1 1 0 -6.73892213314639 LTS-007 chr5 535995 44310492 43774498 * c(SNORD123, CCDC152, LOC100130744, LOC100132356, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506548, LOC100506639, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, NNT-AS1, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, LOC100996325, CDH12, CDH18, MARCH6, BASP1, PAIP1, SLC12A7, ADCY2, SUB1, PAPD7, TPPP, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, NA NA NA NA NA NA NA NA NA LTS-007 UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, LOC153684, DAB2, DAP, UGT3A2, NIM1K, ADAMTS16, DNAH5, RANBP3L, FGF10, CCT5, PDZD2, FBXL7, ICE1, NNT, TTC33, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, FBXO4, GDNF, GHR, LINC01019, C5orf51, LOC285692, LOC285696, DROSHA, HMGCS1, SLC6A19, LINC01020, LOC340107, LOC340113, PLCXD3, SLC6A18, IL7R, C5orf34, ANXA2R, LIFR, FLJ33360, LOC401177, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, OXCT1, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, PRKAA1, CEP72, ANKH, PRLR, CCL28, PRDM9, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, LINC01021, TMEM267, NIPBL-AS1, LOC648987, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LOC728613, C6, LOC729506, LSP1P3, C7, C9, ZNF131, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, CARD6, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155) 0.441896463935603 364 0.0610081309192862 1.01148675028581 15571 0.283716889663762 2 1 1 -7.00819157565534 LTS-007 NA NA NA NA LTS-007 chr5 44310493 44389174 78682 * FGF10 NA 0 NA 0.870752022682392 21 0.225664869515247 0 NA NA -5.76582050049352 LTS-007 chr5 44389175 44808948 419774 * character(0) NA 0 NA 1.278 1 NA NA NA NA NA LTS-007 chr5 44808949 45696278 887330 * c(MRPS30, HCN1) NA 0 NA 1.16278753174895 155 0.258153963017616 4 NA NA -5.76978364611218 LTS-007 chr5 49692017 49694583 2567 * EMB 0.475 1 NA 0.990677858628168 47 0.305334430925507 2 2 0 -5.76441063834545 LTS-007 chr5 49694584 69373289 19678706 * c(LRRC70, FAM159B, NA, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, NA NA NA NA NA NA NA NA NA LTS-007 MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, GUSBP3, SMN1, SMN2, TAF9, MIR449B, MIR581, GTF2H2C, PARP8, ANKRD55, ELOVL7, TRAPPC13, SERF1A, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.439786935043485 128 0.0806001079348792 0.957371533422881 8215 0.24804372271838 2 1 1 -6.91292937696779 LTS-007 NA NA NA NA LTS-007 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.004 1 NA NA NA NA NA LTS-007 chr5 69717474 70357226 639753 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.301447379602924 63 0.190945767762259 0 NA NA -10.3837989130139 LTS-007 chr5 70357227 70369072 11846 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.981 1 NA NA NA NA NA LTS-007 chr5 70369073 93855367 23486295 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-007 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.451658686050591 270 0.0568337092582784 0.976528478146351 10307 0.411895477365816 2 1 1 -6.88900645567108 LTS-007 NA NA NA NA LTS-007 chr5 93855368 96367979 2512612 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.44785952665194 58 0.0391634892070708 0.91569717293605 2203 0.186415966378488 1 1 0 -6.99663153307691 LTS-007 chr5 96367980 96371827 3848 * character(0) NA 0 NA 1.31715215685291 77 0.334336838122936 6 NA NA -5.76442631936394 LTS-007 chr5 96371828 96371832 5 * character(0) NA 0 NA 0.885 1 NA NA NA NA NA LTS-007 chr5 96371833 126205172 29833340 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, PAM, NA NA NA NA NA NA NA NA NA LTS-007 TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.437861798394013 165 0.0788398054905367 0.9754283737761 8361 0.262510360783521 2 1 1 -6.780269234875 LTS-007 NA NA NA NA LTS-007 chr5 126205173 129522229 3317057 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.445863268386312 23 0.038412674950307 1.05973822097001 1543 0.284383402522626 3 2 1 -6.95204945858052 LTS-007 chr5 129522230 134332018 4809789 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-007 FNIP1, DDX46) 0.428050730656345 45 0.0864866253454045 0.91864317126807 4483 0.236759131380269 1 1 0 -6.73989225396691 LTS-007 NA NA NA NA LTS-007 chr5 134332019 136956869 2624851 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.448784608175659 36 0.035952835064934 1.02288378483488 1195 0.267286296209679 2 1 1 -7.05902843015079 LTS-007 chr5 136956870 136956928 59 * KLHL3 NA 0 NA 0.911 1 NA NA NA NA NA LTS-007 chr5 136956929 140483377 3526449 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, NA NA NA NA NA NA NA NA NA LTS-007 PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.449253535384492 63 0.0656960175191004 0.942025234063723 5231 0.205434025142375 1 1 0 -6.89371608571324 LTS-007 NA NA NA NA LTS-007 chr5 140483378 140502177 18800 * c(PCDHB4, PCDHB3) 0.429 1 NA 0.929669490549306 15 0.67182734460007 1 1 0 -5.76442005492148 LTS-007 chr5 140502178 145667044 5164867 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, PCDHB5, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, PCDHB18P, PCDHB17P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, NA NA NA NA NA NA NA NA NA LTS-007 PCDHB8, PCDHB7, PCDHB6, PCDHB4, KCTD16, PCDHB16, HMHB1, GRXCR2, ARAP3, TAF7, LOC729080, NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.406303353794383 96 0.105023136548697 0.953161203127103 4546 1.93139808942942 2 2 0 -6.73423232516987 LTS-007 NA NA NA NA LTS-007 chr5 145667045 149363196 3696152 * c(PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSNK1A1, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, IL17B, HTR4, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, RBM27, POU4F3, PPP2R2B, SPINK9, SPINK1, CARMN, PCYOX1L, SH3TC2, FBXO38, SPINK7, JAKMIP2) 0.445118880519295 58 0.0751083830707433 1.02325959764068 3088 0.274129205613422 3 2 1 -6.82306062256401 LTS-007 chr5 149363197 159992573 10629377 * c(C5orf52, MIR3142, MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, SLU7, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, LSM11, ZNF300P1, UBLCP1, CSF1R, ADRA1B, SLC36A2, PPP1R2P3, FAM71B, RNF145, SLC26A2, EBF1, SLC36A1, FABP6, FAT2, HMGXB3, ATP10B, LARP1, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, LOC285626, LOC285627, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, ARSI, IRGM, NIPAL4, IL12B, ITK, NA NA NA NA NA NA NA NA NA LTS-007 SAP30L-AS1, MIR146A, FNDC9, MFAP3, ATOX1, DCTN4, PDGFRB, THG1L, GALNT10, RBM22, NMUR2, RPS14, ZBED8, SGCD, SLC6A7, SPARC, TCOF1, TTC1, CCNJL, SAP30L, CAMK2A, TIGD6, HAVCR2, SMIM3, ADAM19, TIMD4, ZNF300, MYOZ3, PTTG1, CNOT8, HAND1, MED7, CLINT1, CD74) 0.441373415156439 192 0.0712210597665869 0.960330110005948 8034 0.226093196195666 2 1 1 -6.85357747319569 LTS-007 NA NA NA NA LTS-007 chr5 159992574 159992578 5 * ATP10B NA 0 NA 1.207 1 NA NA NA NA NA LTS-007 chr5 159992579 168678553 8685975 * c(MIR103B1, NUDCD2, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.425436650683088 29 0.101208668508586 1.02545011728743 1935 0.237367159567722 3 2 1 -6.82861774807091 LTS-007 chr5 168678554 173382954 4704401 * c(FAM196B, LOC100268168, MIR3912, MIR378E, C5orf58, NKX2-5, CREBRF, DOCK2, DUSP1, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, KCNMB1, LCP2, NPM1, RPL26L1, NEURL1B, SPDL1, ERGIC1, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, CPEB4, STC2, FGF18, ATP6V0E1, BOD1, UBTD2) 0.419815468342045 51 0.112979512284655 0.948049636159311 2941 0.434556642985284 2 1 1 -6.75551576611692 LTS-007 chr5 173382955 175386656 2003702 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, CPEB4, THOC3, SFXN1) 0.436817003814454 18 0.031292265535639 1.04690616642192 630 0.33342298618717 3 2 1 -6.86218578618647 LTS-007 chr5 175386657 175388460 1804 * THOC3 NA 0 NA 0.463588890445901 65 0.348151867144431 0 NA NA -5.76752954356798 LTS-007 chr5 175388461 175391941 3481 * THOC3 NA 0 NA 0.929 1 NA NA NA NA NA LTS-007 chr5 175391942 175528676 136735 * c(FAM153B, THOC3) NA 0 NA 1.62763436483053 81 1.0271040001677 11 NA NA -5.76442493803594 LTS-007 chr5 175528677 175530196 1520 * FAM153B NA 0 NA 0.867 1 NA NA NA NA NA LTS-007 chr5 175530197 177161968 1631772 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.449625721948244 57 0.0686066116924586 0.940081491675372 3171 0.257159190331517 1 1 0 -6.84734798069765 LTS-007 chr5 177161969 177163488 1520 * FAM153A NA 0 NA 0.257 1 NA NA NA NA NA LTS-007 chr5 177163489 177220746 57258 * FAM153A NA 0 NA 0.551065728097369 44 0.405145592811038 0 NA NA -5.80084318701189 LTS-007 chr5 177220747 180374817 3154071 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.445805665963165 88 0.0825233438048124 0.967797511149669 3705 0.240676674957414 2 1 1 -6.78914388213491 LTS-007 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.777 1 NA NA NA NA NA LTS-007 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 1.762178500196 63 0.26410918392647 13 NA NA -5.76460039508428 LTS-007 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 1.083 1 NA NA NA NA NA LTS-007 chr5 180430826 180651383 220558 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.458913548245561 5 0.0366837838833455 0.948894466657124 315 0.242891079277688 2 1 1 -7.26402906559784 LTS-007 chr5 180651384 180688111 36728 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 0.96326522822831 213 0.18206599401295 2 NA NA -5.76474779532333 LTS-007 chr6 203389 203397 9 * character(0) 0.412 1 NA 2.67 1 NA NA NA NA NA LTS-007 chr6 203398 5261219 5057822 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.424323345323973 130 0.0545627652235222 0.94981874504915 2536 0.365393194296619 2 1 1 -6.76370447071796 LTS-007 chr6 5261220 5368721 107502 * FARS2 NA 0 NA 1.041 1 NA NA NA NA NA LTS-007 chr6 5368722 31130760 25762039 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, LOC100506207, ELOVL2-AS1, LINC01012, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, NA NA NA NA NA NA NA NA NA LTS-007 RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, ZSCAN23, NKAPL, TOB2P1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, STMND1, CASC15, ERVFRD-1, MAK, NEDD9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, MRS2, RREB1, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, ZNF192P1, BMP6, SLC17A1, SOX4, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, LY86, EEF1E1, FAM65B, ZSCAN12, KIAA0319, NUP153) 0.444684874547471 498 0.0639707264641512 0.988162045474363 16076 0.489703223287543 2 1 1 -6.80216462109139 LTS-007 NA NA NA NA LTS-007 chr6 31130761 31138377 7617 * character(0) 0.413 1 NA 1.06461772950782 61 0.216243933551474 3 3 0 -5.76441276054789 LTS-007 chr6 31138378 31170734 32357 * character(0) 0.405487697474485 2 0.000707106781186587 0.829878557546024 28 0.142333365860002 7 5 2 -7.74735638271029 LTS-007 chr6 31170735 31170804 70 * character(0) 0.397 1 NA 0.555 1 NA NA NA NA NA LTS-007 chr6 31170805 31324996 154192 * character(0) 0.405331450396796 43 0.0944478914968191 0.718910211027186 147 0.307834801216793 0 0 0 -6.77697296158638 LTS-007 chr6 31324997 31371205 46209 * character(0) NA 0 NA 1.046 1 NA NA NA NA NA LTS-007 chr6 31371206 31948360 577155 * character(0) 0.426057737375061 21 0.0443605895447965 0.954782903221258 2884 0.183498675401747 2 1 1 -6.74611114037636 LTS-007 chr6 31948361 31948440 80 * character(0) NA 0 NA 0.68 1 NA NA NA NA NA LTS-007 chr6 31948441 32013759 65319 * character(0) 0.397231684160497 3 0.125834547455511 0.761417633325398 268 0.341511112638141 2 2 0 -6.76017565106605 LTS-007 chr6 32013760 32155948 142189 * character(0) 0.439857616334938 6 0.0971872762591208 0.987060632667911 744 0.185580410370533 2 1 1 -6.75117255347369 LTS-007 chr6 32155949 32188099 32151 * character(0) 0.462 1 NA 1.03270050897701 223 0.222332256969139 3 3 0 -5.76465901921999 LTS-007 chr6 32188100 32427927 239828 * character(0) 0.428287229426826 81 0.0565086276598539 1.05125441856321 465 0.328870903081415 3 2 1 -6.73999982593722 LTS-007 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 2.881 1 NA NA NA NA NA LTS-007 chr6 32485401 32497964 12564 * HLA-DRB5 0.309778047289776 3 0.129623814684391 2.21886148306903 43 1.69069315861547 20 16 4 -6.73311698347461 LTS-007 chr6 32497965 32546795 48831 * HLA-DRB5 0.412532624620935 13 0.0814131596494238 1.25597954414718 21 0.729899008017384 4 3 1 -6.73371115714338 LTS-007 chr6 32546796 32546800 5 * HLA-DRB5 0.302 1 NA 1.376 1 NA NA NA NA NA LTS-007 chr6 32546801 32628611 81811 * c(HLA-DQA1, HLA-DRB5) 0.328062744547024 118 0.0852862607325341 1.22704519688707 252 1.26671824997439 6 6 0 -6.73334130147552 LTS-007 chr6 32628612 32628621 10 * character(0) 0.373 1 NA 0.657 1 NA NA NA NA NA LTS-007 chr6 32628622 33035512 406891 * character(0) 0.375595037300044 63 0.0985995251481822 0.966910194014375 848 1.01227488099694 4 4 0 -6.74406830059097 LTS-007 chr6 33035513 33054760 19248 * character(0) 0.436 1 NA 2.12161503011926 123 20.505224957035 17 17 0 -5.76441013950573 LTS-007 chr6 33054761 33647651 592891 * c(ITPR3, LINC00336, GGNBP1, BAK1) 0.340731560153242 15 0.17513920993639 0.963182236731515 1897 0.249006071714288 2 2 0 -6.82480530648007 LTS-007 chr6 33647652 33648228 577 * ITPR3 0.468 1 NA 0.94787778309588 9 0.101920857095646 2 2 0 -5.76445981021653 LTS-007 chr6 33648229 37599840 3951612 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, RAB44, MLN, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, NA NA NA NA NA NA NA NA NA LTS-007 MAPK13, CPNE5, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.432960851825188 93 0.0828415719322473 0.96381316309862 4840 0.207736266720307 2 1 1 -6.76820393531234 LTS-007 NA NA NA NA LTS-007 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.42 1 NA NA NA NA NA LTS-007 chr6 37599845 41658758 4058914 * c(LOC100131047, MIR4641, APOBEC2, BTBD9, FOXP4, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, MDGA1, GLO1, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, SAYSD1, LRFN2, ZFAND3, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.423871215475873 85 0.101694477070619 1.03669997984579 2869 0.27988038913609 3 2 1 -6.74737706442292 LTS-007 chr6 41658759 44415024 2756266 * c(LINC01512, TOMM6, MIR4647, MIR4642, DNPH1, CNPY3, FRS3, SLC22A7, CAPN11, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, MRPL2, PEX6, PGC, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, PRPH2, NA NA NA NA NA NA NA NA NA LTS-007 C6orf132, MRPL14, DLK2, SRF, TBCC, BYSL, VEGFA, TFEB, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.428073509185499 63 0.101840831907064 0.976379082204787 5657 0.2080718022203 2 1 1 -6.73765950383875 LTS-007 NA NA NA NA LTS-007 chr6 44415025 51613306 7198282 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, PKHD1, CLIC5, CENPQ, ENPP5, RHAG, MIR586, TFAP2B, CRISP2, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.425597508859599 82 0.0700594759588954 1.07438692767649 2894 0.361215268770896 3 2 1 -6.741197800217 LTS-007 chr6 51613307 53516408 1903102 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.426222512838439 43 0.0953584947706126 0.948924260113154 1649 0.212785190679723 2 1 1 -6.76906920595698 LTS-007 chr6 53516409 57246969 3730561 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.429895437779526 45 0.0806014324258007 1.05014306466495 2474 0.263376690195968 3 2 1 -6.7407914813413 LTS-007 chr6 57246970 57254927 7958 * PRIM2 0.383 1 NA 1.29953785872818 3 0.164001016257014 6 6 0 -5.76444762493377 LTS-007 chr6 57254928 57512678 257751 * PRIM2 0.340455859266247 38 0.0683638547988537 1.331365459089 89 0.682469604250057 8 7 1 -6.7359174802372 LTS-007 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.962620675274568 19 0.122111012669639 2 NA NA -5.78456080837542 LTS-007 chr6 62390154 62407067 16914 * KHDRBS2 0.469 1 NA 1.30410888079335 23 0.378856559254447 6 6 0 -5.76443315442032 LTS-007 chr6 62407068 73951837 11544770 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.428039270585862 36 0.0874615017348449 1.03050462458287 2686 0.306790604879521 3 2 1 -6.79036419320129 LTS-007 chr6 73951838 74440257 488420 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.359565971986239 5 0.193157448730304 0.88145613637457 625 0.204906143843018 1 1 0 -6.80158483854695 LTS-007 chr6 74440258 86253456 11813199 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, SNX14, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.424237483694722 75 0.0977782064555168 1.02383777875961 4186 0.242182170207982 3 2 1 -6.86883934455362 LTS-007 chr6 86253457 86256814 3358 * SNX14 NA 0 NA 0.927 1 NA NA NA NA NA LTS-007 chr6 86256815 91296539 5039725 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.45408218784953 56 0.0367387406552683 0.941971627612358 3382 0.19783233644137 1 1 0 -7.25783768989347 LTS-007 chr6 91296540 105177087 13880548 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.435876187119983 73 0.0782851522863253 1.02024730130839 2457 0.304046602849537 2 1 1 -6.8573543492006 LTS-007 chr6 105177088 121625954 16448867 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-007 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.446192809725055 185 0.0620945778952985 0.950817766369117 8951 0.230756145233452 2 1 1 -7.04151166331271 LTS-007 NA NA NA NA LTS-007 chr6 121625955 121629101 3147 * TBC1D32 NA 0 NA 1.005 1 NA NA NA NA NA LTS-007 chr6 121629102 127647717 6018616 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3) 0.441746066340239 38 0.0376687384299971 1.04002699106799 1941 0.257121973533127 3 2 1 -6.9079905829298 LTS-007 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.923 1 NA NA NA NA NA LTS-007 chr6 127648124 149721690 22073567 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, HBS1L, RAB32, MTFR2, TMEM200A, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, NA NA NA NA NA NA NA NA NA LTS-007 GRM1, HIVEP2, TAAR6, SLC35D3, IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FBXO30, STX7, L3MBTL3, LTV1, REPS1, PEX3, STX11, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.445824500676218 163 0.0639465262670014 0.972205637089606 10098 0.298906083664831 2 1 1 -6.83503496272376 LTS-007 NA NA NA NA LTS-007 chr6 149721691 149721965 275 * c(TAB2, SUMO4) 0.394 1 NA 0.892683116208918 7 0.0922901738565715 1 1 0 -5.76441838394262 LTS-007 chr6 149721966 149732711 10746 * c(TAB2, SUMO4) 0.172355307984254 3 0.206980675426476 0.996116288007552 52 0.270503770015799 18 18 0 -6.79197398603199 LTS-007 chr6 149732712 149771699 38988 * c(TAB2, ZC3H12D) NA 0 NA 0.832 1 NA NA NA NA NA LTS-007 chr6 149771700 149979416 207717 * c(KATNA1, GINM1, ZC3H12D, RPS18P9, PPIL4, LATS1) 0.417999547675649 6 0.033428530728506 0.855773252637226 270 0.174626220719248 0 0 0 -6.74918168252913 LTS-007 chr6 149979417 149979683 267 * LATS1 0.441 1 NA 0.969092692823733 7 0.211816519882747 2 2 0 -5.76441110386159 LTS-007 chr6 149979684 150140447 160764 * c(NUP43, PCMT1, LRP11, LATS1) 0.450211234734648 14 0.0589572391140905 0.901531537644363 349 0.196753431829786 0 0 0 -6.87032491469735 LTS-007 chr6 150140448 150140450 3 * LRP11 NA 0 NA 0.962 1 NA NA NA NA NA LTS-007 chr6 150140451 154534016 4393566 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, IPCEF1, FBXO5, RGS17, RAET1G, IYD, OPRM1, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.454153486322859 100 0.0380793642252333 0.99722683212365 3152 0.420843654976626 2 1 1 -7.1135607664841 LTS-007 chr6 154534017 160491117 5957101 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.462396772972714 121 0.0336494650979389 0.925316871456927 3448 0.9610991111953 2 1 1 -7.47716135531085 LTS-007 chr6 160491118 160492845 1728 * IGF2R NA 0 NA 1.021 1 NA NA NA NA NA LTS-007 chr6 160492846 160769811 276966 * c(IGF2R, SLC22A1, SLC22A3, SLC22A2, LOC729603) 0.455066477837004 14 0.0318058153504967 0.980829659881849 330 0.22450921688935 2 1 1 -7.29029992739981 LTS-007 chr6 160769812 160828060 58249 * SLC22A3 0 1 NA 1.10404622303222 11 1.28872916260379 4 4 0 -5.76442424126716 LTS-007 chr6 160828061 170890384 10062324 * c(HGC6.3, LOC100289495, MIR1913, MIR3939, CAHM, MIR4644, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, LOC154449, DACT2, C6orf118, WDR27, LINC01558, DLL1, GPR31, PACRG-AS1, PRR18, KIF25, C6orf120, DKFZp451B082, TCP10L2, LINC00242, LPA, MAP3K4, AFDN, LINC00602, PARK2, PDCD2, MPC1, PLG, UNC93A, PHF10, ERMARD, PSMB1, AGPAT4, RPS6KA2, SMOC2, AFDN-AS1, SLC22A3, T, TBP, TCP10, TCTE3, THBS2, FRMD1, AGPAT4-IT1, NA NA NA NA NA NA NA NA NA LTS-007 LINC00574, LPAL2, TTLL2, FAM120B, RNASET2, LINC00473, QKI) 0.429767968422243 112 0.0863960340197233 0.983608155323298 4545 0.39635749758097 2 1 1 -6.73688247039688 LTS-007 NA NA NA NA LTS-007 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.859679465382571 45 0.205817394794512 0 NA NA -5.76444141176407 LTS-007 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.455 1 NA 0.929576503186612 125 0.130446713876933 1 1 0 -5.76632232116737 LTS-007 chr7 331087 5161640 4830554 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ZNF890P, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19, NA NA NA NA NA NA NA NA NA LTS-007 AP5Z1) 0.449748114522672 185 0.0532772375626137 0.960119978686996 4375 0.232905293432721 2 1 1 -6.91664492540295 LTS-007 NA NA NA NA LTS-007 chr7 5161641 5166477 4837 * ZNF890P 0 1 NA 1.1544896297361 9 1.29791815141702 4 4 0 -5.76441074246031 LTS-007 chr7 5166478 5372406 205929 * c(SLC29A4, WIPI2, ZNF890P, TNRC18) 0.356779829210133 14 0.155160887787165 0.943407326642919 313 0.279947184350996 3 3 0 -6.77890686451555 LTS-007 chr7 5372407 5396955 24549 * TNRC18 0.482 1 NA 0.883648580648639 34 0.246731662680297 1 1 0 -5.7646403262551 LTS-007 chr7 5396956 5926027 529072 * c(RNF216-IT1, ZNF815P, RNF216, ACTB, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.435107707376509 15 0.0681844138034074 0.9123926394223 580 0.296670732448874 1 1 0 -6.75728414578247 LTS-007 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.598 1 NA NA NA NA NA LTS-007 chr7 5937950 5958596 20647 * CCZ1 0.124 1 NA 0.606108341100078 50 0.258370457810849 0 0 0 -5.78374242074868 LTS-007 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 2.189 1 NA NA NA NA NA LTS-007 chr7 5959444 6006781 47338 * c(RSPH10B, CCZ1) 0.412935787340856 2 0.132228968081884 1.49775056507106 69 0.785015835712147 11 7 4 -6.73346546878825 LTS-007 chr7 6006782 6012853 6072 * RSPH10B NA 0 NA 0.758 1 NA NA NA NA NA LTS-007 chr7 6012854 6791201 778348 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.460878622741997 47 0.0573632226731436 0.911210743369846 1318 0.213713742465304 1 1 0 -7.00491625642003 LTS-007 chr7 6791202 6797238 6037 * c(PMS2CL, RSPH10B2) NA 0 NA 0.222 1 NA NA NA NA NA LTS-007 chr7 6797239 6820560 23322 * RSPH10B2 NA 0 NA 0.3898790535876 39 0.316673013644753 0 NA NA -5.84487507783569 LTS-007 chr7 6820561 6820926 366 * RSPH10B2 NA 0 NA 0.053 1 NA NA NA NA NA LTS-007 chr7 6820927 6844723 23797 * c(CCZ1B, RSPH10B2) NA 0 NA 0.152993688786067 39 0.435755513730221 0 NA NA -5.97419261941293 LTS-007 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.416 1 NA NA NA NA NA LTS-007 chr7 6845571 6866001 20431 * CCZ1B 0.184 1 NA 1.59161499392482 40 0.532239486654125 10 10 0 -5.76441415104971 LTS-007 chr7 6866002 6866015 14 * character(0) NA 0 NA 0.846 1 NA NA NA NA NA LTS-007 chr7 6866016 30876362 24010347 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, THSD7A, DKFZP586I1420, NA NA NA NA NA NA NA NA NA LTS-007 MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.438698100755889 224 0.0739072245909212 1.00330224522868 9869 0.271130997550588 2 1 1 -6.82431546561711 LTS-007 NA NA NA NA LTS-007 chr7 30876363 31823235 946873 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.430645857646451 18 0.0349490759319432 1.16781935598065 735 0.289770692015175 4 2 2 -6.76827828799748 LTS-007 chr7 31823236 34987334 3164099 * c(DPY19L1P1, LOC100130673, MIR550B2, FKBP9, BMPER, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.413079974965826 42 0.0819003388590455 1.06161240687046 1347 0.670966844786989 3 2 1 -6.74052547200946 LTS-007 chr7 34987335 34989355 2021 * DPY19L1 NA 0 NA 0.971 1 NA NA NA NA NA LTS-007 chr7 34989356 51261158 16271803 * c(DDC-AS1, C7orf72, MIR1200, MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, AOAH-IT1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, TMED4, HECW1, NACAD, COBL, DPY19L1, KIAA0895, NUDCD3, LINC00957, SUN3, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, AOAH, HUS1, FAM183BP, IGFBP1, IGFBP3, LINC00265, GPR141, NA NA NA NA NA NA NA NA NA LTS-007 INHBA, VWC2, LOC401324, RASA4CP, C7orf65, TARP, OGDH, NME8, UBE2D4, PGAM2, POLD2, ANLN, DDX56, EPDR1, PPIA, DPY19L2P1, URGCP, COA1, PSMA2, YAE1D1, TBX20, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, HERPUD2, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, UPP1, C7orf25, SUGCT, C7orf69, EEPD1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV, ELMO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SEPT7) 0.435684650059571 174 0.0858346135986824 0.96669610820663 8768 0.430653476049933 2 1 1 -6.76514534419324 LTS-007 NA NA NA NA LTS-007 chr7 51261159 51261164 6 * COBL NA 0 NA 1.171 1 NA NA NA NA NA LTS-007 chr7 51261165 55874726 4613562 * c(EGFR-AS1, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, HPVC1, SEPT14, FKBP9P1, LINC01446, LANCL2, VOPP1) 0.444351185565012 42 0.0376433535615988 1.0229995969181 974 0.285905302712537 2 1 1 -6.96875608937384 LTS-007 chr7 55874727 55929747 55021 * SEPT14 0.343 1 NA 1.06412611943547 35 0.360272147366497 3 3 0 -5.7644158053656 LTS-007 chr7 55929748 57531696 1601949 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.3556603798885 31 0.122380650659792 1.02332960224968 570 0.254190762243445 3 3 0 -6.79324610453629 LTS-007 chr7 57531697 57533232 1536 * ZNF716 NA 0 NA 1.25088266810628 24 0.420782087567177 6 NA NA -5.76441303822781 LTS-007 chr7 62758725 63023528 264804 * ZNF733P 0.272 1 NA 0.737623247526774 7 0.593164636264069 0 0 0 -5.7716748819856 LTS-007 chr7 63023529 64643425 1619897 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.457028319243736 11 0.0307922658530293 0.964758649500617 601 0.260619780906337 2 1 1 -7.39712999594762 LTS-007 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.529 1 NA NA NA NA NA LTS-007 chr7 64643764 65160072 516309 * c(ZNF92, LOC441242, INTS4P2) 0.449847632809201 2 0.0162634559672906 0.58485396286086 94 0.178555553479399 0 0 0 -9.07242138343473 LTS-007 chr7 65160073 77762229 12602157 * c(POM121C, PMS2P9, LOC100133091, MIR4284, MIR3914-1, MIR3914-2, APTR, MIR4651, MIR4650-1, MIR4650-2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, NA NA NA NA NA NA NA NA NA LTS-007 TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.421626861493678 162 0.0904625793401314 0.970304225824653 5902 0.3442299428173 2 1 1 -6.74797254318931 LTS-007 NA NA NA NA LTS-007 chr7 77762230 86506772 8744543 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.43813209934513 23 0.0995263486276184 1.09869591085538 2013 0.238378572216436 4 2 2 -6.83304091474474 LTS-007 chr7 86506773 98639840 12133068 * c(MIR3609, LOC100506136, MIR4652, LOC101409256, AKAP9, SLC25A13, CDK6, BET1, DBF4, TP53TG1, COL1A2, RUNDC3B, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, SAMD9L, C7orf62, ZNF804B, KIAA1324L, TMEM130, LMTK2, PEG10, HEPACAM2, FAM133B, BRI3, TECPR1, STEAP2, STEAP1, GNG11, GNGT1, DLX6-AS1, MGC72080, LRRD1, C7orf76, ASNS, DPY19L2P4, NPTX2, OCM2, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PON1, PON2, PON3, NA NA NA NA NA NA NA NA NA LTS-007 ANKIB1, CROT, SAMD9, PPP1R9A, VPS50, BAIAP2L1, SLC25A40, SDHAF3, SMURF1, MIR489, GATAD1, CASD1, SRI, TAC1, MIR591, MIR653, TMEM243, STEAP4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, TRRAP, FZD1, RBM48, NA, GTPBP10, KRIT1, SGCE, CLDN12, DMTF1) 0.435616985321423 108 0.100839708697126 0.994094120395257 7961 0.236503811552963 2 1 1 -6.7529457311182 LTS-007 NA NA NA NA LTS-007 chr7 98639841 100491729 1851889 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, NA NA NA NA NA NA NA NA NA LTS-007 C7orf43, MEPCE, AZGP1, SLC12A9, SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, TRIP6, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.434533822793264 58 0.0765422594607945 0.947098360828714 4809 0.735448919025369 2 1 1 -6.74997093247051 LTS-007 NA NA NA NA LTS-007 chr7 100491730 100549499 57770 * ACHE NA 0 NA 1.00753613214754 21 0.349363795927343 2 NA NA -5.76455257725743 LTS-007 chr7 100549500 100549573 74 * character(0) 0.24 1 NA 3.362 1 NA NA NA NA NA LTS-007 chr7 100549574 100550184 611 * character(0) 0.381153941455206 21 0.0633773656457136 1.94616982387758 33 0.846276359197374 11 8 3 -6.73333007213257 LTS-007 chr7 100550185 100550203 19 * character(0) 0.079 1 NA 1.31778935698725 3 0.61084968145472 7 7 0 -5.76441015671487 LTS-007 chr7 100550204 100550467 264 * character(0) 0.245870058664077 8 0.0860131842053464 1.7562190396749 13 0.566623863390965 20 18 2 -6.73315990703755 LTS-007 chr7 100550468 100551183 716 * character(0) 0.251880500416159 11 0.0914984351580049 0.648383336899076 39 0.496459172391398 11 11 0 -6.7348223887979 LTS-007 chr7 100551184 100551187 4 * character(0) 0.127 1 NA 2.095 1 NA NA NA NA NA LTS-007 chr7 100551188 100551397 210 * character(0) 0.252799111068253 14 0.0630743935434905 1.69219801008101 18 0.431309072869873 15 14 1 -6.73307635024769 LTS-007 chr7 100551398 100551433 36 * character(0) 0.346 1 NA 2.215 1 NA NA NA NA NA LTS-007 chr7 100551434 100553077 1644 * character(0) 0.368282193035471 51 0.0733134126240774 1.83064620958749 85 0.874271699302729 12 9 3 -6.73303497893383 LTS-007 chr7 100553078 100553092 15 * character(0) NA 0 NA 1.081 1 NA NA NA NA NA LTS-007 chr7 100553093 100662272 109180 * MUC12 0.374141704592219 32 0.10234102049426 1.08460685853253 218 0.506759572626393 4 4 0 -6.73682540757437 LTS-007 chr7 100662273 100675976 13704 * MUC17 0.488 1 NA 1.01020910808657 33 0.25756913605571 2 2 0 -5.76448787544886 LTS-007 chr7 100675977 107831720 7155744 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, ZNHIT1, SH2B2, DUS4L, AP1S1, COL26A1, MUC17, CUX1, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, CLDN15, POLR2J2, HBP1, DNAJC2, GPR22, SLC26A4-AS1, MOGAT3, DPY19L2P2, NAT16, SLC26A5, LHFPL3, LAMB1, NRCAM, ORC5, SERPINE1, NA NA NA NA NA NA NA NA NA LTS-007 FIS1, SLC26A4, PIK3CG, POLR2J, PUS7, ALKBH4, POLR2J3, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, IFT22, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, VGF, PRKRIP1, CBLL1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.437212146778314 74 0.0576181496252242 0.963976417213155 6143 0.251739464989782 2 1 1 -6.80166455257954 LTS-007 NA NA NA NA LTS-007 chr7 107831721 107831810 90 * NRCAM NA 0 NA 1.004 1 NA NA NA NA NA LTS-007 chr7 107831811 127897100 20065290 * c(MIR3666, AASS, FAM3C, CFTR, ZNF277, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, RNF133, THAP5, ZNF800, TFEC, HYAL4, TSPAN12, POT1, HYALP1, TES, SND1, SND1-IT1, LSMEM1, GPR37, GRM8, MDFIC, FSCN3, ST7-OT4, IFRD1, KCND2, RNF148, ARF5, FEZF1, LEP, LINC00998, MIR129-1, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, PNPLA8, PAX4, TAS2R16, WNT16, LSM8, GPR85, ING3, LRRN3, PPP1R3A, ANKRD7, PTPRZ1, NA NA NA NA NA NA NA NA NA LTS-007 LRRC4, TMEM168, SLC13A1, SPAM1, MIR592, MIR593, TMEM229A, WNT2, GCC1, ST7, CPED1, CAPZA2, IMMP2L, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, DOCK4) 0.453787573063548 100 0.0346698075500219 1.01095592773287 6498 0.268963856714235 2 1 1 -7.28273336399725 LTS-007 NA NA NA NA LTS-007 chr7 127897101 128454997 557897 * c(MGC27345, HILPDA, FAM71F2, IMPDH1, LEP, PRRT4, LINC01000, RBM28, METTL2B, OPN1SW, CCDC136, CALU, FAM71F1) 0.432692625745123 25 0.0551331116480831 0.919828641427522 838 0.303140934768389 1 1 0 -6.7585327444674 LTS-007 chr7 128454998 128455663 666 * CCDC136 NA 0 NA 1.174 1 NA NA NA NA NA LTS-007 chr7 128455664 136701563 8245900 * c(LOC100130705, SMKR1, RNA5SP244, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, SLC13A4, COPG2, TPI1P2, FLJ40288, WDR91, MESTIT1, TSPAN33, AGBL3, STRA8, LOC349160, IRF5, KCP, LINC-PINT, FAM180A, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, CNOT4, NRF1, CPA4, ZC3HC1, PODXL, CHCHD3, TMEM140, AKR1B10, MIR490, STRIP2, NA NA NA NA NA NA NA NA NA LTS-007 EXOC4, NA, C7orf73, CCDC136, SMO, BPGM, UBE2H, LUZP6, C7orf49, CALD1, SLC35B4, TMEM209, PLXNA4, ATP6V1F, CPA5, CEP41) 0.443106648772064 91 0.0440776676043638 0.997623705651512 5269 0.281842556846755 2 1 1 -6.86584712083456 LTS-007 NA NA NA NA LTS-007 chr7 136701564 137074052 372489 * c(CHRM2, LOC349160, PTN) 0 1 NA 1.08216883943918 135 0.38741889145621 3 3 0 -5.76510061018771 LTS-007 chr7 137074053 141705515 4631463 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, KIAA1549, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, TTC26, KDM7A, SLC37A3, TRIM24, MGAM, ADCK2, DGKI, ZC3HAV1L NA NA NA NA NA NA NA NA NA LTS-007 ) 0.431089277126054 63 0.0883618711690608 0.990977575998269 4260 0.24304099041452 2 1 1 -6.73972965255613 LTS-007 NA NA NA NA LTS-007 chr7 141705516 141718951 13436 * MGAM 0.313 1 NA 1.09211729255808 7 0.75530142201325 3 3 0 -5.7644234402531 LTS-007 chr7 141718952 141765684 46733 * MGAM 0.446 1 NA 1.05227388100956 172 0.188820019314697 3 3 0 -5.76444314369225 LTS-007 chr7 141765685 141766489 805 * MGAM NA 0 NA 0.702 1 NA NA NA NA NA LTS-007 chr7 141766490 141794346 27857 * MGAM 0 1 NA 0.599415064393551 93 0.473051498461165 0 0 0 -5.77275011208542 LTS-007 chr7 141794347 142498837 704491 * c(MOXD2P, MTRNR2L6, PRSS58, PRSS3P2, PRSS1, NA, MGAM, MGAM2) 0.313511102168829 70 0.119344364897184 1.0932196201208 866 0.832804860409548 6 6 0 -6.75515797422601 LTS-007 chr7 142498838 142498897 60 * character(0) 0.318 1 NA 0.740092814907032 3 0.22700660783334 0 0 0 -5.76442062443658 LTS-007 chr7 142498898 142499884 987 * character(0) 0.156190463350846 9 0.11282508586303 1.10934521253212 21 0.649686165995332 20 20 0 -6.76266185482418 LTS-007 chr7 142499885 143016928 517044 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, CASP2, OR6W1P) 0.436 1 NA 0.994500848458925 807 0.187753385295749 2 2 0 -5.76518338957001 LTS-007 chr7 143016929 143969622 952694 * c(CLCN1, OR2A14, OR6B1, OR2F2, LOC154761, EPHA1, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A7, CTAGE15, OR2A2, ARHGEF35, ARHGEF34P, ZYX, FAM131B, TCAF1) 0.406989122945626 20 0.109698438313501 1.01619488585157 877 0.325338281044402 2 2 0 -6.73833331596372 LTS-007 chr7 143969623 143971137 1515 * ARHGEF34P NA 0 NA 0.303 1 NA NA NA NA NA LTS-007 chr7 143971138 143981556 10419 * ARHGEF34P NA 0 NA 0.530489118444599 39 0.404036270268286 0 NA NA -5.77238073952179 LTS-007 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 1.181 1 NA NA NA NA NA LTS-007 chr7 143982346 156742779 12760434 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, NA NA NA NA NA NA NA NA NA LTS-007 CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, ARHGEF34P, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.43772767942118 273 0.0652279987649705 1.02197099192501 8235 0.429902973505463 2 1 1 -6.81877693023469 LTS-007 NA NA NA NA LTS-007 chr7 156742780 156761818 19039 * NOM1 0.419 1 NA 1.01935276209527 73 0.174400961022236 2 2 0 -5.76484568975423 LTS-007 chr7 156761819 156763720 1902 * NOM1 0.289575264612727 9 0.232477418258204 1.10794720173392 35 0.546174777333189 8 8 0 -6.73340883111974 LTS-007 chr7 156763721 156763847 127 * NOM1 0.482 1 NA 1.18856508116815 3 0.224145785892426 5 5 0 -5.76441048714709 LTS-007 chr7 156763848 158937585 2173738 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.420501359570089 49 0.0559240784548159 1.01403729466749 1365 0.254238363119338 2 1 1 -6.75088931853368 LTS-007 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.884 2 0 0 NA NA -Inf LTS-007 chr8 182757 182781 25 * ZNF596 0.3 1 NA 0.497 1 NA NA NA NA NA LTS-007 chr8 182782 7305471 7122690 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.444589052517088 114 0.0633731601624115 1.01237919774252 2350 0.301736262926252 2 1 1 -6.83677700636848 LTS-007 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.655 1 NA NA NA NA NA LTS-007 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.347321707137754 3 0.105044435042192 0.784364232700428 104 0.915246330044647 5 5 0 -6.7917206158549 LTS-007 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.859 1 NA NA NA NA NA LTS-007 chr8 8175295 17157113 8981819 * c(FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LINC00681, DLC1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, XKR6, MICU3, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MIR124-1, MSR1, MSRA, MIR383, ZDHHC2, PINX1, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, NA NA NA NA NA NA NA NA NA LTS-007 MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ERI1, MTMR7, LONRF1, MFHAS1, RP1L1) 0.446590170161597 131 0.065121347499696 0.99543321399831 3846 0.331862556489488 2 1 1 -6.81636357383573 LTS-007 NA NA NA NA LTS-007 chr8 17157114 17157677 564 * MTMR7 0.472 1 NA 1.03694326343361 11 0.140212695573546 3 3 0 -5.76441782424947 LTS-007 chr8 17157678 21894197 4736520 * c(NAT2, LOC100128993, LZTS1-AS1, NPM2, LZTS1, FGL1, XPO7, PSD3, GFRA2, LOC286114, LPL, ASAH1, PCM1, PDGFRL, ATP6V1B2, INTS10, CSGALNACT1, MTUS1, SH2D4A, SLC7A2, SLC18A1, NAT1, DOK2, MTMR7) 0.430024939887582 93 0.0783968802152833 0.964954488575294 2454 0.637709865939543 2 1 1 -6.74094918133301 LTS-007 chr8 21894198 21894278 81 * NPM2 NA 0 NA 0.847 1 NA NA NA NA NA LTS-007 chr8 21894279 23431407 1537129 * c(LOC100507156, SORBS3, NPM2, PEBP4, EGR3, R3HCC1, LGI3, DMTN, RHOBTB2, SLC39A14, LOC254896, LOC286059, LOC389641, LOXL2, MIR320A, SLC25A37, C8orf58, PIWIL2, PPP3CC, HR, BIN3, CCAR2, PDLIM2, SFTPC, FAM160B2, BMP1, POLR3D, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, CHMP7, ENTPD4, PHYHIP) 0.45171668025547 118 0.0440781648368511 0.919048332343136 3060 0.202681662350243 1 1 0 -7.00629885363728 LTS-007 chr8 23431408 23538008 106601 * NKX3-1 0.374 1 NA 0.900147078253038 67 0.160705130133417 1 1 0 -5.76478765586584 LTS-007 chr8 23538009 30690278 7152270 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, PNMA2, ADAM28, RBPMS, CHRNA2, CLU, NKX2-6, ADRA1A, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, ADAMDEC1, GNRH1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, NEFM, NEFL, NKX3-1, SCARA3, SARAF, PNOC, KCTD9, ELP3, PPP2CB, PPP2R2A, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, NA NA NA NA NA NA NA NA NA LTS-007 EBF2, BNIP3L, STC1, HMBOX1, FZD3, UBXN8, DOCK5, STMN4, ADAM7) 0.428255648245624 178 0.0908231786200312 0.95307838026405 5417 0.59733188790634 2 1 1 -6.74829073511335 LTS-007 NA NA NA NA LTS-007 chr8 30690279 43056492 12366214 * c(LOC100130964, MIR4469, NRG1-IT3, AP3M2, ERLIN2, PROSC, CHRNB3, SMIM19, GOT1L1, GPAT4, UNC5D, LETM2, HGSNAT, ADRB3, NKX6-3, KCNU1, ADAM3A, IDO2, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, FNTA, ADAM2, ADAM5, ADGRA2, DKK4, LSM1, ANK1, RNF5P1, PURG, NRG1, IKBKB, IDO1, C8orf86, GOLGA7, PLAT, POLB, WHSC1L1, THAP1, BRF2, TEX15, C8orf4, PLEKHA2, MIR486-1, SFRP1, SLC20A2, STAR, TACC1, LOC728024, VDAC3, WRN, NA NA NA NA NA NA NA NA NA LTS-007 DUSP26, ZMAT4, RNF122, KAT6A, ZNF703, TTI2, RAB11FIP1, RNF170, TM2D2, POMK, GINS4, HOOK3, PLPP5, MAK16, FUT10, ADAM18, ADAM9, CHRNA6, ASH2L, BAG4) 0.441182512133209 112 0.0645336677467217 0.984257970061179 7054 0.2394177519229 2 1 1 -6.78074038186407 LTS-007 NA NA NA NA LTS-007 chr8 43056493 43212050 155558 * c(HGSNAT, POTEA) NA 0 NA 1.07917263415736 75 0.269221268051339 3 NA NA -5.76486342470149 LTS-007 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.418 1 NA 1.05496721170012 47 0.167070797115605 3 3 0 -5.76452596341426 LTS-007 chr8 48102988 48975705 872718 * c(LOC100287846, CEBPD, SPIDR, MCM4, PRKDC, UBE2V2) 0.447329902789864 11 0.046593600809163 0.962627700912846 893 0.21325601495779 2 1 1 -6.89933028077925 LTS-007 chr8 48975706 52359688 3383983 * c(PXDNL, C8orf22, SNTG1, SNAI2, EFCAB1) 0.386816383306732 7 0.167308952881445 1.14630381854552 388 0.355937319776061 4 4 0 -6.74401181416642 LTS-007 chr8 52359689 52361502 1814 * PXDNL NA 0 NA 0.851 1 NA NA NA NA NA LTS-007 chr8 52361503 67973698 15612196 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, COPS5, XKR4, PCMTD1, TMEM68, ADHFE1, UBXN2B, PXDNL, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, FAM150A, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, OPRK1, NA NA NA NA NA NA NA NA NA LTS-007 PDE7A, ATP6V1H, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, VCPIP1, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, ST18, TOX, RB1CC1) 0.399565921169956 85 0.114894578399759 0.99923004308357 5885 0.283919734281241 2 2 0 -6.75983250107709 LTS-007 NA NA NA NA LTS-007 chr8 67973699 69621347 1647649 * c(ARFGEF1, COPS5, C8orf34, C8orf34-AS1, CPA6, CSPP1, PREX2) 0.429397840398304 7 0.0385289007172043 1.09166625505808 1091 0.259402278313299 3 2 1 -6.76718436413611 LTS-007 chr8 69621348 69688537 67190 * C8orf34 NA 0 NA 0.932 1 NA NA NA NA NA LTS-007 chr8 69688538 88884879 19196342 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, REXO1L2P, MIR2052, LINC01592, MIR5708, MIR5681A, MIR5681B, LOC101241902, NCOA2, WWP1, STMN2, C8orf34, DCAF4L2, RALYL, RDH10, SLC7A13, SBSPON, CNBD1, E2F5, EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, ATP6V0D2, REXO1L1P, STAU2, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, LOC392232, C8orf59, MIR2052HG, PI15, ZC2HC1A, LACTB2, RMDN1, PMP2, GDAP1, NA NA NA NA NA NA NA NA NA LTS-007 CNGB3, TMEM70, UBE2W, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, PRDM14, SNX16, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, CA1, CA2, CA3, ZFAND1, ZFHX4, SLCO5A1, CRISPLD1, LRRCC1, PSKH2, CPNE3, TRPA1, MSC, CHMP4C, KCNB2) 0.429804700085857 114 0.0819874271358282 1.02608883738762 6126 0.325169194820608 3 2 1 -6.84551819203458 LTS-007 NA NA NA NA LTS-007 chr8 88884880 89049529 164650 * c(DCAF4L2, MMP16) 0.398267868659813 4 0.100771606450759 1.17921545313742 138 0.272110430380393 5 4 1 -6.73375257635062 LTS-007 chr8 89049530 89209548 160019 * MMP16 NA 0 NA 1.1786120237415 136 0.24267737128943 5 NA NA -5.76532684423811 LTS-007 chr8 89209549 89339721 130173 * MMP16 0.424 1 NA 0.802016410662938 9 0.17011425898822 0 0 0 -5.7694470597802 LTS-007 chr8 89339722 100880649 11540928 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, FAM92A1, NDUFAF6, C8orf37, VPS13B, DECR1, TMEM64, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, NBN, MTERF3, OTUD6B, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, NA NA NA NA NA NA NA NA NA LTS-007 SDC2, NECAB1, LINC00535, STK3, MIR599, OSGIN2, UQCRB, CALB1, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, RIPK2, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.440269889875524 113 0.090772914622574 0.970712946673517 5278 0.238028401952674 2 1 1 -6.78160990124268 LTS-007 NA NA NA NA LTS-007 chr8 100880650 100882947 2298 * VPS13B NA 0 NA 0.913 1 NA NA NA NA NA LTS-007 chr8 100882948 104053252 3170305 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.424101990477146 48 0.0721368104014422 0.887653493250127 1851 0.211930520708509 1 1 0 -6.76309270096305 LTS-007 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.181 1 NA NA NA NA NA LTS-007 chr8 104054528 117654739 13600212 * c(MIR2053, MIR3151, BAALC-AS1, LINC00536, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, SYBU, ENY2, TRHR, TRPS1, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.433806590696569 67 0.0780656057811002 1.03401750368944 3511 1.60591349265706 3 2 1 -6.74802452038324 LTS-007 chr8 117654740 135817198 18162459 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MIR3610, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, COLEC10, RNF139, ZHX1, ADCY8, MAL2, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, SLC30A8, EXT1, ZHX2, EFR3A, LRRC6, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, SAMD12, MIR30B, MIR30D, FER1L6-AS1, AARD, MYC, NDUFB9, NA NA NA NA NA NA NA NA NA LTS-007 NOV, TNFRSF11B, ASAP1, PHF20L1, FAM49B, ENPP2, POU5F1B, TRMT12, WDYHV1, SAMD12-AS1, GSDMC, ZFAT, PVT1, RAD21, ZFAT-AS1, HAS2-AS1, RAD21-AS1, DEPTOR, ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TAF2, TG, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, UTP23, C8orf76, FAM83A, EIF3H, WISP1, MED30, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.443645145773289 129 0.0837274794723838 0.971285209449452 7057 0.237794569736408 2 1 1 -6.80837474732204 LTS-007 NA NA NA NA LTS-007 chr8 135817199 136246458 429260 * LINC01591 NA 0 NA 1.056 1 NA NA NA NA NA LTS-007 chr8 136246459 140946046 4699588 * c(KHDRBS3, COL22A1, LINC01591, FAM135B, KCNK9, TRAPPC9) 0.38654758876881 12 0.179764492398451 1.10064780461115 776 0.306948049686239 4 4 0 -6.76547451382449 LTS-007 chr8 140946047 142366933 1420887 * c(DENND3, AGO2, GPR20, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.445033144676961 45 0.0774960409545956 0.934394968706359 1051 0.200551736895405 1 1 0 -6.80165765009153 LTS-007 chr8 142366934 143998662 1631729 * c(LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, MROH5, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, PSCA, LY6D, JRK) 0.443250006048842 66 0.0525092599226306 1.07248219705421 1232 0.318332868237546 3 2 1 -6.82922988598735 LTS-007 chr8 143998663 143998677 15 * CYP11B2 NA 0 NA 0.994 1 NA NA NA NA NA LTS-007 chr8 143998678 146280802 2282125 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, CYP11B2, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, NA NA NA NA NA NA NA NA NA LTS-007 PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, C8orf33, MIR661, TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.448607918681714 111 0.0415147132577285 0.953948094509439 5986 0.191826881305275 2 1 1 -6.99258699387212 LTS-007 NA NA NA NA LTS-007 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.642353649005211 3 0.0421465696508427 0 NA NA -5.76683243083137 LTS-007 chr9 14732 14764 33 * WASH1 0.45 1 NA 0.428 1 NA NA NA NA NA LTS-007 chr9 14765 6888073 6873309 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, PUM3) 0.438998459083934 78 0.0396187374312251 0.9688689505574 3708 0.226583951631344 2 1 1 -6.8524829357807 LTS-007 chr9 6888074 6893077 5004 * KDM4C NA 0 NA 1.066 1 NA NA NA NA NA LTS-007 chr9 6893078 15183554 8290477 * c(LINC00583, TTC39B, FREM1, KDM4C, LURAP1L, ZDHHC21, LOC389705, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, TMEM261, CER1) 0.448980825825465 37 0.0393221277365522 1.0662032320182 1556 0.272496999963997 3 2 1 -7.00167064953304 LTS-007 chr9 15183555 15185238 1684 * TTC39B NA 0 NA 0.853 1 NA NA NA NA NA LTS-007 chr9 15185239 32787409 17602171 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, TUSC1, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, LINC01242, TMEM215, MIR31, MLLT3, NA NA NA NA NA NA NA NA NA LTS-007 LINC01239, MTAP, NDUFB6, ACO1, CDKN2A-AS1, EQTN, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, PLAA) 0.441511671363344 121 0.0574621386907946 1.00244912205097 5236 0.234782709181164 2 1 1 -6.85211193313513 LTS-007 NA NA NA NA LTS-007 chr9 32787410 32972609 185200 * c(TMEM215, APTX) NA 0 NA 0.815 1 NA NA NA NA NA LTS-007 chr9 32972610 33366672 394063 * c(B4GALT1, SPINK4, DNAJA1, NFX1, CHMP5, APTX, SMU1, BAG1) 0.430470999767719 24 0.0652113620401417 0.89095215369811 668 0.195991967100641 1 1 0 -6.74783358057266 LTS-007 chr9 33366673 33674677 308005 * c(PTENP1, ANXA2P2, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, NOL6) 0.432144419953082 10 0.0492071584674877 0.982058897660102 412 0.245758101977045 2 1 1 -6.75399963584368 LTS-007 chr9 33674678 33794809 120132 * c(PTENP1, PRSS3) 0.014 1 NA 0.9696132655739 40 0.384796142332334 2 2 0 -5.76453427458044 LTS-007 chr9 33794810 34725069 930260 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, PRSS3, KIAA1161, CCL19, CCL21, C9orf24) 0.274114555110627 12 0.112429641298121 0.985842442683503 1523 0.229855323440759 4 4 0 -7.31117839407233 LTS-007 chr9 34725070 34725313 244 * FAM205A NA 0 NA 1.03710792581588 7 0.291389201355621 3 NA NA -5.76441089163384 LTS-007 chr9 34725314 34726281 968 * FAM205A NA 0 NA 0.404270075428619 46 0.379387989873037 0 NA NA -5.76654728089274 LTS-007 chr9 34726282 34831144 104863 * c(FAM205A, FAM205BP) 0.497 1 NA 1.05492120237809 43 0.292782522973251 3 3 0 -5.76442167923096 LTS-007 chr9 34831145 43816026 8984882 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, ZNF658, SPAG8, FBXO10, SIT1, LOC286297, STOML2, IGFBPL1, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, AQP7P3, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, NA, LOC642929, LINC01189, NA NA NA NA NA NA NA NA NA LTS-007 POLR1E, SHB, HRCT1, NA, FGF7P3, MSMP, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.438589369686681 102 0.0507655593021484 0.969787536759089 5038 0.262934856789434 2 1 1 -6.80891800061671 LTS-007 NA NA NA NA LTS-007 chr9 43816027 43816599 573 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.909 1 NA NA NA NA NA LTS-007 chr9 43816600 43861081 44482 * c(LOC286297, LINC01189, CNTNAP3B) 0.31495454169735 2 0.106066017177982 1.63824272984416 31 0.368712071131187 10 9 1 -6.73372967506479 LTS-007 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.11279464293888 8 0.451167612186108 4 NA NA -5.764710548084 LTS-007 chr9 65602571 66457106 854536 * LOC286297 0.274 1 NA 1.39954723746782 3 0.753998894782568 8 8 0 -5.76479008571574 LTS-007 chr9 66457107 68415345 1958239 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.307310480778003 22 0.116264849165666 1.42636772626665 52 0.670315154036908 7 7 0 -6.74007738054359 LTS-007 chr9 68415346 68415351 6 * character(0) NA 0 NA 1.067 1 NA NA NA NA NA LTS-007 chr9 68415352 69002317 586966 * c(FRG1HP, FRG1JP) 0.293063159767027 6 0.0813428956127495 1.20881821343088 14 0.650782217416468 8 8 0 -6.75614072312134 LTS-007 chr9 69002318 70971798 1969481 * c(LOC100133920, FOXD4L3, LOC440896, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.417 1 NA 0.950774410305495 16 0.232036491383001 2 2 0 -5.79208196907059 LTS-007 chr9 70971799 103236026 32264228 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SEC61B, SLC35D2, FAM122A, CKS2, TMC1, COL15A1, CARNMT1, C9orf57, C9orf85, NA NA NA NA NA NA NA NA NA LTS-007 C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, INVS, GNAQ, C9orf47, SPATA31E1, LOC286238, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LOC286359, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, NANS, NUTM2F, DIRAS2, ASPN, TEX10, AUH, NMRK1, STX17, NOL8, C9orf40, RFK, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, KLF9, TGFBR1, TLE1, TLE4, TMOD1, CORO2A, XPA, ZFAND5, SECISBP2, ZCCHC6, GALNT12, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, ZNF484, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.445873783085694 304 0.0676362744720404 0.976999838669106 17147 0.573498277083587 2 1 1 -6.80538543892065 LTS-007 NA NA NA NA LTS-007 chr9 103236027 103260967 24941 * c(MSANTD3-TMEFF1, TMEFF1) NA 0 NA 1.183 1 NA NA NA NA NA LTS-007 chr9 103260968 114090695 10829728 * c(MIR548Q, MSANTD3-TMEFF1, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, NA NA NA NA NA NA NA NA NA LTS-007 IKBKAP, TMEFF1, CTNNAL1, KLF4) 0.429139841063844 144 0.0894939408708933 1.04828565028604 5251 0.740128468054126 3 2 1 -6.73786139192001 LTS-007 NA NA NA NA LTS-007 chr9 114090696 117074810 2984115 * c(FAM225B, MIR3134, MIR4668, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, C9orf43, AMBP, OR2K2, GNG10, FAM225A, SNX30, POLE3, BSPRY, DNAJC25, DNAJC25-GNG10, SLC46A2, INIP, RGS3, MIR455, SUSD1, LRRC37A5P, UGCG, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.43675469709493 105 0.0718523147031822 0.969147856445318 3802 0.264143793426513 2 1 1 -6.76207583501587 LTS-007 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.303 1 NA NA NA NA NA LTS-007 chr9 117085363 117092182 6820 * c(ORM1, ORM2) 0.440470160361844 3 0.045632590692764 0.305330524006207 48 0.194871461545355 0 0 0 -6.92592012830114 LTS-007 chr9 117092183 117092184 2 * c(ORM1, ORM2) NA 0 NA 0.724 1 NA NA NA NA NA LTS-007 chr9 117092185 118916544 1824360 * c(LOC100505478, TMEM268, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.435899573672222 16 0.118105584824202 0.991844389135368 905 0.266636988685313 2 1 1 -6.74094061162149 LTS-007 chr9 118916545 118916751 207 * PAPPA NA 0 NA 1.163 1 NA NA NA NA NA LTS-007 chr9 118916752 123007373 4090622 * c(SNORA70C, ASTN2-AS1, BRINP1, TRIM32, ASTN2, MIR147A, PAPPA, TLR4) 0.454908399049623 6 0.0287315157971173 1.10114982873803 728 0.219976196719055 4 2 2 -7.43781685519122 LTS-007 chr9 123007374 141069927 18062554 * c(LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, LOC100288842, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR4478, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, NA NA NA NA NA NA NA NA NA LTS-007 ZER1, AGPAT2, CEL, CELP, POMT1, ZBTB6, NEK6, SDCCAG3, NOXA1, USP20, SLC27A4, CNTRL, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DBH-AS1, ASB6, SLC34A3, DAB2IP, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, OR1Q1, TTLL11, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, MEGF9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ABCA2, ENDOG, ENG, AK1, NAIF1, STOM, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, NELFB, NSMF, GPSM1, DKFZP434A062, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, LINC00094, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, GSN, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, OR1L6, OR5C1, OR1K1, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NDUFA8, NOTCH1, ODF2, PAEP, PDCL, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, RAB14, C9orf78, FBXW5, RC3H2, TBC1D13, TOR4A, EXD3, PTPA, STRBP, PPP6C, RABL6, CDK5RAP2, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, DOLPP1, PTGDS, PTGS1, KCNT1, ZBTB26, DENND1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, MIR602, TRAF1, TRAF2, TSC1, C5, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, CACNA1B, C9orf16, MAPKAP1, EHMT1, PTGES2, BRD3, NUP214, LHX3, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, MRRF, RBM18, ARRDC1, DPH7, GTF3C5, GTF3C4, LHX2, TMEM203, MED27, PTGES, ENTPD2, RALGPS1, ADAMTSL2, PPP1R26, SEC16A) 0.431786990990115 391 0.0734910793019558 0.969216089077758 26012 0.551810702122813 2 1 1 -6.75125310666458 LTS-007 NA NA NA NA LTS-007 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.604830485381707 7 0.152849287737643 0 NA NA -5.76938505798496 LTS-007 chr10 94832 95289 458 * TUBB8 0.216 1 NA 0.816755873572393 5 0.432433809964022 0 0 0 -5.76441105164967 LTS-007 chr10 95290 17813397 17718108 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, IL2RA, IL15RA, NA NA NA NA NA NA NA NA NA LTS-007 ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.442757755191558 212 0.0746852443217234 0.948579629408083 8813 0.269263350475473 2 1 1 -6.97855973449856 LTS-007 NA NA NA NA LTS-007 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.074 1 NA NA NA NA NA LTS-007 chr10 17842448 17898391 55944 * c(MRC1, NA, TMEM236) NA 0 NA 0.163401234739363 41 0.145498378165464 0 NA NA -8.40498133792629 LTS-007 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 0.959 1 NA NA NA NA NA LTS-007 chr10 17905571 21784156 3878586 * c(NEBL-AS1, SLC39A12-AS1, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, C10orf113, CASC10, MRC1, NA, TMEM236, CACNB2, PLXDC2) 0.456976869305243 41 0.0768865968845533 1.06156288315972 1269 0.331783519131794 3 2 1 -6.85327746677808 LTS-007 chr10 21784157 21784222 66 * CASC10 0.43 1 NA 0.43 1 NA NA NA NA NA LTS-007 chr10 21784223 37421199 15636977 * c(ABI1, MIR938, GPR158-AS1, LOC100130992, MIR1915, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, ENKUR, ARMC3, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, ITGB1, PTCHD3, KIF5B, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, NA NA NA NA NA NA NA NA NA LTS-007 PARD3, PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12, SPAG6) 0.436616396424329 110 0.0750571475354844 0.96611176826443 6559 0.382475374093582 2 1 1 -6.77740171686662 LTS-007 NA NA NA NA LTS-007 chr10 37421200 37433873 12674 * ANKRD30A 0.27 1 NA 1.04898445488882 22 0.242938682517222 3 3 0 -5.76442203176391 LTS-007 chr10 37433874 38647498 1213625 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.350605610021883 10 0.151104673065469 0.967929446986515 527 0.278162198882921 2 2 0 -6.82316291913303 LTS-007 chr10 38647499 38740384 92886 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.09482511384535 47 0.240795955015645 3 NA NA -5.76546699789248 LTS-007 chr10 42379879 42928826 548948 * LOC441666 0.153564105441939 9 0.155235126322764 1.37459737629272 38 1.05801572408163 19 19 0 -6.830201272134 LTS-007 chr10 42928827 42965636 36810 * character(0) 0.444 1 NA 1.02839888735599 23 0.727590351343109 3 3 0 -5.76444626547589 LTS-007 chr10 42965637 46934817 3969181 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.442702046888501 23 0.0442764402595256 0.967358283300095 1722 0.202149854319769 2 1 1 -6.86973233122289 LTS-007 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 4.054 1 NA NA NA NA NA LTS-007 chr10 46952744 47420602 467859 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.387808971935296 33 0.0734026875901322 1.30457215961876 215 0.515643938899255 6 5 1 -6.74076338878129 LTS-007 chr10 47420603 47658503 237901 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 0.961 1 NA NA NA NA NA LTS-007 chr10 47658504 50189505 2531002 * c(ZNF488, FRMPD2, CTSLP2, NA, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.434548741620355 41 0.0822840262481714 1.04346502945058 1254 0.292435987975774 3 2 1 -6.75038920912477 LTS-007 chr10 50189506 50190511 1006 * c(NA, WDFY4) NA 0 NA 0.678 1 NA NA NA NA NA LTS-007 chr10 50190512 53564412 3373901 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MSMB, NA, OGDHL, PRKG1, ASAH2, WDFY4, DRGX, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.435485164401053 61 0.04501313712308 0.969637683611743 1723 0.281921497990473 2 1 1 -6.78577226512346 LTS-007 chr10 53564413 55584884 2020472 * c(PRKG1-AS1, DKK1, MBL2, PRKG1, PCDH15) 0.460913400675895 11 0.0406472631304987 1.13811014923431 511 0.349767931340337 4 2 2 -7.21598403485523 LTS-007 chr10 55584885 55587107 2223 * PCDH15 NA 0 NA 0.978 1 NA NA NA NA NA LTS-007 chr10 55587108 61897102 6309995 * c(MTRNR2L5, MIR3924, MRLN, ZWINT, SLC16A9, FAM13C, IPMK, LINC01553, ANK3, CISD1, PCDH15, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL) 0.42548656284015 42 0.11592742733636 1.02340385096265 1633 0.27194698909868 3 2 1 -6.79312874066706 LTS-007 chr10 61897103 61898282 1180 * ANK3 NA 0 NA 0.717 1 NA NA NA NA NA LTS-007 chr10 61898283 72536936 10638654 * c(MIR1296, MIR548AV, COL13A1, ADAMTS14, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, PALD1, ANK3, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, NODAL, NEUROG3, PPA1, LRRC20, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, SAR1A, PBLD, NPFFR1, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, NA NA NA NA NA NA NA NA NA LTS-007 AIFM2, ADO, JMJD1C-AS1, DDX21, VPS26A, CDK1, RHOBTB1) 0.424890538917007 145 0.105465150587792 0.944482570034474 5636 0.250468744451411 1 1 0 -6.86087478780448 LTS-007 NA NA NA NA LTS-007 chr10 72536937 72648422 111486 * c(TBATA, PCBD1, SGPL1) 0.447 1 NA 0.929173165065663 259 0.264938257744383 1 1 0 -5.76476840250041 LTS-007 chr10 72648423 74671611 2023189 * c(MIR1256, MIR4676, MICU1, ANAPC16, OIT3, UNC5B, C10orf105, PCBD1, ASCC1, DDIT4, DNAJB12, SLC29A3, PSAP, CDH23, C10orf54, UNC5B-AS1, MCU, CHST3, SPOCK2) 0.454440424612312 58 0.0343546853298605 0.933255107086303 1727 0.194213210551868 1 1 0 -7.26115167374175 LTS-007 chr10 74671612 74692646 21035 * OIT3 0.444 1 NA 0.928903919413323 45 0.214101887384998 1 1 0 -5.76451057310007 LTS-007 chr10 74692647 74767686 75040 * c(OIT3, P4HA1, PLA2G12B) 0.257271558424563 9 0.132954043856431 0.910392813134862 55 0.188483442457973 7 7 0 -7.01572308962994 LTS-007 chr10 74767687 74834651 66965 * P4HA1 0.468 1 NA 0.910519657298955 68 0.146440505917883 1 1 0 -5.76441161749488 LTS-007 chr10 74834652 76970924 2136273 * c(ECD, CHCHD1, MSS51, CFAP70, ADK, SAMD8, USP54, FUT11, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, MRPS16, DUSP13, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.438937662498855 82 0.0415675261369719 0.926783648194922 2620 0.1912642763567 1 1 0 -6.84819191470372 LTS-007 chr10 76970925 96805707 19834783 * c(PLCE1-AS1, DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, HECTD2-AS1, BMS1P21, FAS-AS1, GRID1-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, PPIF, RPP30, NRG3, ADIRF, POLR3A, LDB3, COMTD1, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, DYDC1, EIF5AL1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, CPEB3, WAPL, TBC1D12, IFIT5, ZNF503-AS1, LRIT1, NA NA NA NA NA NA NA NA NA LTS-007 MYOF, PIPSL, ANKRD1, GHITM, GLUD1, FLJ37201, ZMIZ1-AS1, GRID1, HELLS, HHEX, ANXA11, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KCNMA1, KIF11, SH2D4B, C10orf99, SLC16A12, LIPA, MIR107, LINC00595, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, PLCE1, PDE6C, PANK1, CCSER2, EXOC6, FAM35A, MARCH5, PPP1R3C, CEP55, RNLS, ZMIZ1, PTEN, STAMBPL1, ACTA2, RBP4, RGR, RPS24, LOC642361, FAM25A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 NOC3L, LIPK, LIPN, LINC00865, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, VDAC2, MMRN2, TMEM254, TNKS2, TSPAN14, C10orf11, FAM213A, DYDC2, PCGF5, ZNF503, ATAD1, MBL1P, LIPF, CH25H, BTAF1, PAPSS2, LGI1, CDHR1, DLG5, OPN4, MINPP1, KIF20B) 0.436747216221158 232 0.0720982369376522 0.972308248079375 10196 0.295621216208486 2 1 1 -6.77857863698236 LTS-007 NA NA NA NA LTS-007 chr10 96805708 96818115 12408 * CYP2C8 NA 0 NA 0.85 1 NA NA NA NA NA LTS-007 chr10 96818116 106159268 9341153 * c(TLX1NB, MIR936, C10orf131, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4482, MIR4685, MIR5692C2, ACTR1A, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, CYP2C8, CYP17A1, NKX2-3, CFAP58, DNTT, FGF8, NT5C2, NA NA NA NA NA NA NA NA NA LTS-007 PDCD11, PPRC1, RRP12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, KCNIP2, TLX1, HPS1, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, SUFU, PGAM1, PITX3, CCNJ, CNNM2, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, AVPI1, HPSE2, SCD, MMS19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SFRP5, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, PDLIM1, NEURL1, NOLC1, OPALIN, GSTO1, ENTPD1, SH3PXD2A, SLK, ZNF518A NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ) 0.445600043944508 178 0.0717357735185916 0.922347069518121 12321 0.197882165559072 1 1 0 -6.8212964580718 LTS-007 NA NA NA NA LTS-007 chr10 106159269 106160491 1223 * CFAP58 NA 0 NA 1.104 1 NA NA NA NA NA LTS-007 chr10 106160492 116856484 10695993 * c(MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, SMNDC1, SORCS1, ADD3, TRUB1, VTI1A, ADRA2A, ADRB1, CFAP58, DUSP5, SORCS3, ATRNL1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, TCF7L2, TECTB, XPNPEP1, PLEKHS1, SHOC2, CASP7, AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.445605496548929 97 0.0578053152171489 0.958862235493733 4313 0.291821336981045 2 1 1 -6.87883433979453 LTS-007 chr10 116856485 116881451 24967 * ATRNL1 NA 0 NA 1.24 1 NA NA NA NA NA LTS-007 chr10 116881452 119308575 2427124 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.456249398961816 10 0.0291221565135551 1.03603240403041 1514 0.22652811301433 3 2 1 -7.47088771427642 LTS-007 chr10 119308576 122263462 2954887 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.425363319489153 17 0.114690953025434 0.932726213817796 1628 0.576016062183622 1 1 0 -6.73663247101796 LTS-007 chr10 122263463 122273360 9898 * PLPP4 NA 0 NA 1.187 1 NA NA NA NA NA LTS-007 chr10 122273361 124338284 2064924 * c(MIR3941, TACC2, ATE1, BTBD16, DMBT1, PLPP4, FGFR2, WDR11-AS1, ARMS2, NSMCE4A, WDR11, HTRA1, PLEKHA1) 0.438529961770019 28 0.0935051706122016 1.0123483511624 1202 0.263570289617132 2 1 1 -6.76279934678134 LTS-007 chr10 124338285 124357489 19205 * DMBT1 NA 0 NA 0.592218850820505 39 0.174716210999337 0 NA NA -5.80938317266416 LTS-007 chr10 124357490 124359492 2003 * DMBT1 NA 0 NA 1.049 1 NA NA NA NA NA LTS-007 chr10 124359493 127496038 3136546 * c(TEX36-AS1, MIR4296, FAM24B-CUZD1, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, FAM24B, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, LHPP, IKZF5, UROS, C10orf88, BUB3, FAM53B) 0.408061576102035 62 0.0859134081296796 0.988751215769601 2195 0.310534807866146 2 2 0 -6.73330521131742 LTS-007 chr10 127496039 127585091 89053 * c(MIR4484, DHX32, BCCIP, UROS) 0.333 1 NA 1.01160181118601 178 0.215730922202021 2 2 0 -5.76521162326846 LTS-007 chr10 127585092 127585260 169 * FANK1 0.265560807444519 9 0.0787693538827831 0.667692658741626 15 0.391241333389483 10 10 0 -6.73351747295111 LTS-007 chr10 127585261 127730728 145468 * c(FANK1-AS1, ADAM12, FANK1) 0.448 1 NA 1.06651852620162 209 0.227610005679264 3 3 0 -5.764491922942 LTS-007 chr10 127730729 134693137 6962409 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2) 0.437600826582618 82 0.0626805323990212 1.00431169196971 2553 0.293635677757889 2 1 1 -6.78348471372298 LTS-007 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.524 1 NA NA NA NA NA LTS-007 chr10 134694406 134756359 61954 * CFAP46 0.110392604015809 3 0.219970452561247 0.52482423393 166 0.486968478685527 18 18 0 -7.11694376619264 LTS-007 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.368 1 NA NA NA NA NA LTS-007 chr10 134884462 135381823 497362 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.457763317749188 33 0.0436949870573203 0.985233225230637 1364 0.259897468611417 2 1 1 -7.09186401632614 LTS-007 chr10 135381824 135381888 65 * c(SPRNP1, SYCE1) NA 0 NA 0.91 1 NA NA NA NA NA LTS-007 chr10 135381889 135473026 91138 * c(SPRNP1, FRG2B, SYCE1) 0.38574119924441 7 0.0309930867867566 0.917054603367389 38 1.07994753474851 3 3 0 -6.73848889766408 LTS-007 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.783 1 NA NA NA NA NA LTS-007 chr11 193025 193096 72 * SCGB1C1 0.285 1 NA 0.297 1 NA NA NA NA NA LTS-007 chr11 193097 1010649 817553 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.420527524704649 124 0.0813591839370949 0.922914057192576 2911 0.355819869603367 1 1 0 -6.73371248965799 LTS-007 chr11 1010650 1016049 5400 * c(AP2A2, MUC6) NA 0 NA 0.972540145134438 60 0.112845040242558 2 NA NA -5.76445283114949 LTS-007 chr11 1016050 1016263 214 * MUC6 0.343 1 NA 1.37590760058605 5 0.273769611169684 7 7 0 -5.76441054687762 LTS-007 chr11 1016264 1018232 1969 * MUC6 0.282726262694967 43 0.106261790434343 1.41840564188882 85 0.568795468647616 12 11 1 -6.7336360718823 LTS-007 chr11 1018233 1018245 13 * MUC6 NA 0 NA 0.989 1 NA NA NA NA NA LTS-007 chr11 1018246 1018496 251 * MUC6 0.18444717277092 2 0.0650538238691624 2.38378462352008 3 1.75170554983802 19 19 0 -6.73392676353264 LTS-007 chr11 1018497 1019375 879 * MUC6 0.472 1 NA 0.822968996595666 11 0.162368268283721 0 0 0 -5.76441620478614 LTS-007 chr11 1019376 1255773 236398 * c(MUC2, MUC6, MUC5B) 0.389331343497752 50 0.10597100874238 1.02914239845761 702 0.262455357353354 3 3 0 -6.73477020419453 LTS-007 chr11 1255774 1258175 2402 * MUC5B 0.24 1 NA 0.995768747919822 17 0.230318497507512 2 2 0 -5.76441321395786 LTS-007 chr11 1258176 1260217 2042 * MUC5B 0.248105336532206 10 0.106387133725006 1.23929434318726 18 0.34054826997506 12 12 0 -6.73557290645243 LTS-007 chr11 1260218 1262907 2690 * MUC5B 0.44 1 NA 0.934507658484286 47 0.19744247514105 1 1 0 -5.76443623912143 LTS-007 chr11 1262908 1507991 245084 * c(TOLLIP-AS1, TOLLIP, MUC5B, MOB2, BRSK2) 0.434883766615236 9 0.0473060367301163 1.02452880831161 456 0.225860315864982 2 1 1 -6.77546859855721 LTS-007 chr11 1507992 1509159 1168 * MOB2 NA 0 NA 0.883 1 NA NA NA NA NA LTS-007 chr11 1509160 4510357 3001198 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, DUSP8, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR52K1, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, NA NA NA NA NA NA NA NA NA LTS-007 MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, MOB2, CARS, SYT8, CD81) 0.442761688272598 102 0.045715804378219 0.946274829704475 3058 0.214096604791502 2 1 1 -6.9070390553282 LTS-007 NA NA NA NA LTS-007 chr11 4510358 4510524 167 * OR52K1 NA 0 NA 1.193 1 NA NA NA NA NA LTS-007 chr11 4510525 4562905 52381 * OR52K1 0.39 1 NA 1.06400646156712 13 0.136814585367317 3 3 0 -5.7644458077582 LTS-007 chr11 4562906 4566377 3472 * character(0) 0.426 1 NA 1.50945112979544 7 0.219000652314749 9 9 0 -5.76441106964053 LTS-007 chr11 4566378 5603163 1036786 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR51T1, OR51A4, OR51A2, UBQLN3, TRIM68, MMP26, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2) 0.458361314253167 90 0.0325799429733205 1.08642829196549 1515 0.545618974166702 4 2 2 -7.37346320897486 LTS-007 chr11 5603164 5617987 14824 * c(TRIM6, HBG2, TRIM6-TRIM34) 0.457 1 NA 0.990448205531647 5 0.343809104009769 2 2 0 -5.76441224091508 LTS-007 chr11 5617988 5777005 159018 * c(TRIM22, TRIM6, HBG2, OR56B1, OR52N4, TRIM6-TRIM34, TRIM34, TRIM5) 0.433128576316853 13 0.0365409850680519 1.02948904991865 386 0.267136231449457 2 1 1 -6.78193407908601 LTS-007 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.764 1 NA NA NA NA NA LTS-007 chr11 5798827 5809775 10949 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 1.67369210637548 42 0.55766660713678 11 NA NA -5.76441433838387 LTS-007 chr11 5809776 20044761 14234986 * c(LOC100126784, MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, MIR5691, NAV2-AS5, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, HPS5, PRKCDBP, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, SPTY2D1, TMEM86A, OR10A5, OR2AG1, DNHD1, LDHAL6A, C11orf42, OR56B4, EIF4G2, NA NA NA NA NA NA NA NA NA LTS-007 RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, MRGPRX1, SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, OR10A4, OLFML1, LOC283299, GTF2H1, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LDHA, LDHC, NAV2-AS4, LMO1, ARNTL, TMEM41B, LOC440028, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, CALCA, RIC3, CALCB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 E2F8, CSRP3, SBF2, FAM160A2, FAR1, BTBD10, PTPN5, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, NAV2, MICAL2, CTR9, TRIM66) 0.449000733292353 328 0.0579832808982719 0.95866873110523 13174 0.395888318972598 2 1 1 -6.89228952181279 LTS-007 NA NA NA NA LTS-007 chr11 20044762 20057412 12651 * NAV2 NA 0 NA 1.247 1 NA NA NA NA NA LTS-007 chr11 20057413 20622975 565563 * c(PRMT3, HTATIP2, DBX1, NAV2, SLC6A5) 0.429131613184802 13 0.0601035431354583 1.02017829597425 441 0.206612718560685 2 1 1 -6.74904607354494 LTS-007 chr11 20622976 20623042 67 * SLC6A5 0.498 1 NA 1.62202340805988 3 0.963740801944866 11 11 0 -5.76441014733853 LTS-007 chr11 20623043 26683813 6060771 * c(CCDC179, MUC15, ANO5, FANCF, SVIP, GAS2, LUZP2, NELL1, SLC17A6, ANO3, SLC6A5) 0.415142297912221 34 0.132395655614784 1.078517646912 1224 0.358417002549675 3 2 1 -6.74406290330383 LTS-007 chr11 26683814 26684012 199 * ANO3 0.384 1 NA 1.2801432595386 5 1.74775046845938 6 6 0 -5.76441013466133 LTS-007 chr11 26684013 26691707 7695 * c(SLC5A12, ANO3) 0.285495471847318 10 0.195881483442299 1.1540351966332 94 0.597866591587186 8 8 0 -6.73450427338465 LTS-007 chr11 26691708 26691876 169 * SLC5A12 0.399 1 NA 1.11528646697282 5 0.42103895306729 4 4 0 -5.76441027591844 LTS-007 chr11 26691877 31128474 4436598 * c(DCDC5, LINC00678, ARL14EP, SLC5A12, METTL15, FSHB, DCDC1, KCNA4, FIBIN, BDNF-AS, LIN7C, LGR4, BDNF, MIR610, MPPED2, KIF18A, BBOX1, CCDC34) 0.453613940327124 34 0.0319471488689619 1.05749941146971 1458 0.278182195515798 3 2 1 -7.2626886496931 LTS-007 chr11 31128475 46939875 15811401 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, MIR5582, HIPK3, EIF3M, CHRM4, C11orf74, LARGE2, DNAJC24, CRY2, LDLRAD3, C11orf94, CSTF3, IMMP1L, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, HARBI1, LINC00294, COMMD9, CSTF3-AS1, DCDC1, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, NA NA NA NA NA NA NA NA NA LTS-007 LMO2, LRP4, MIR129-2, CAPRIN1, MDK, DKFZp686K1684, CCDC73, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, ZNF408, QSER1, PRR5L, PDHX, ACCS, CAT, DGKZ, CHST1, API5, TSPAN18, CREB3L1, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.427436906495027 178 0.0984601096634926 0.974551342799355 8049 0.280815321943203 2 1 1 -6.7485151060135 LTS-007 NA NA NA NA LTS-007 chr11 46939876 46958276 18401 * c(LRP4, C11orf49) NA 0 NA 0.769 1 NA NA NA NA NA LTS-007 chr11 46958277 47801058 842782 * c(NR1H3, CELF1, C1QTNF4, PTPMT1, DDB2, NUP160, FNBP4, MTCH2, PACSIN3, FAM180B, MYBPC3, NDUFS3, ACP2, KBTBD4, PSMC3, RAPSN, SPI1, C11orf49, AGBL2, ARFGAP2, MADD, SLC39A13) 0.433088202516076 30 0.0560745501311762 0.920437661147875 1774 0.195904247079531 1 1 0 -6.76041050853443 LTS-007 chr11 47801059 48346419 545361 * c(OR4X2, OR4B1, NUP160, OR4S1, OR4X1, PTPRJ) NA 0 NA 0.924278676310213 474 0.225372453099383 1 NA NA -5.76569217497127 LTS-007 chr11 48346420 48346423 4 * character(0) 0.388 1 NA 2.557 1 NA NA NA NA NA LTS-007 chr11 48346424 48388657 42234 * c(OR4C3, OR4C45) 0.341879304479044 109 0.0698092919381842 1.97118948993502 183 1.2705261980425 14 11 3 -6.73317473841917 LTS-007 chr11 48388658 48388675 18 * character(0) NA 0 NA 1.097 1 NA NA NA NA NA LTS-007 chr11 48388676 51527482 3138807 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.387704491163263 18 0.144982351867188 1.09742550576497 459 0.521357023452166 3 3 0 -6.74178066002734 LTS-007 chr11 51527483 51527703 221 * character(0) NA 0 NA 1.26118825674806 3 0.132790561913614 6 NA NA -5.7644119149063 LTS-007 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.483 1 NA 0.940451354100604 17 0.734551033345019 1 1 0 -5.76449353927595 LTS-007 chr11 55111585 56467926 1356342 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.381763245321622 52 0.115651756616346 1.14202612864307 1046 0.518343609436729 4 4 0 -6.74359977455334 LTS-007 chr11 56467927 56468198 272 * c(OR8U8, OR9G9) 0.062 1 NA 1.14757390149722 5 0.487276615486522 4 4 0 -5.76441024644303 LTS-007 chr11 56468199 56468835 637 * c(OR8U8, OR9G9) 0.200254564717914 10 0.153309454662421 1.58513143671961 24 0.904808855624983 17 17 0 -6.73306609108211 LTS-007 chr11 56468836 56508619 39784 * OR8U8 0.431 1 NA 0.943605079407471 3 0.332112932599741 1 1 0 -5.764672243541 LTS-007 chr11 56508620 56956561 447942 * c(OR5AK4P, LRRC55, OR9G4, OR5AK2) 0.404 1 NA 1.05887597116091 147 0.212862013060646 3 3 0 -5.76441043256555 LTS-007 chr11 56956562 60535009 3578448 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, LINC00301, SLC43A3, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, NA NA NA NA NA NA NA NA NA LTS-007 OSBP, P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.439592191770024 90 0.0774141391402531 1.00418197601082 4135 0.277582149201377 2 1 1 -6.77078510425188 LTS-007 NA NA NA NA LTS-007 chr11 60535010 60543909 8900 * MS4A15 0.425 1 NA 0.96293521840068 39 0.202709091331647 2 2 0 -5.7644781603715 LTS-007 chr11 60543910 61729907 1185998 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, TKFC, DKFZP434K028, PRPF19, MS4A10, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, SYT7, CD5, CD6, FADS2) 0.444117030417298 66 0.0770455076977902 0.965962689197469 2904 0.20347298277598 2 1 1 -6.78472837226855 LTS-007 chr11 61729908 61730006 99 * BEST1 NA 0 NA 0.937 1 NA NA NA NA NA LTS-007 chr11 61730007 68856011 7126005 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, NA NA NA NA NA NA NA NA NA LTS-007 CTSW, GRK2, GPHA2, EEF1G, MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INCENP, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, ROM1, RPS6KB2, FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, METTL12, SF1, ZFPL1, LRFN4, AHNAK, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, ASRGL1, TMEM134, MUS81, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FOSL1, INTS5, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.441819155512869 256 0.0682864851663384 0.944854065420925 16603 0.222846887559906 1 1 0 -6.89665305771671 LTS-007 NA NA NA NA LTS-007 chr11 68856012 69062621 206610 * c(TPCN2, MYEOV) NA 0 NA 1.043 1 NA NA NA NA NA LTS-007 chr11 69062622 73588240 4525619 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, ARAP1, DHCR7, CTTN, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, MYEOV, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, COA4, PDE2A, MRPL48, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, PLEKHB1, RAB6A, NA NA NA NA NA NA NA NA NA LTS-007 CCND1, PAAF1, CLPB, RELT, PPFIA1, FADD, ATG16L2, ARHGEF17, FCHSD2, FGF19) 0.421794964573998 96 0.107540224522505 0.981690540402429 4185 0.249933540202515 2 1 1 -6.73365762910237 LTS-007 NA NA NA NA LTS-007 chr11 73588241 73611478 23238 * PAAF1 0.381 1 NA 0.949709991067231 37 0.245567816605826 2 2 0 -5.76472168959984 LTS-007 chr11 73611479 96125365 22513887 * c(NAALAD2, KCNE3, MIR708, KCTD21-AS1, MIR1304, SNORA70E, MIR4300, MIR1260B, RAB30-AS1, LOC100506368, TPBGL, NDUFC2-KCTD14, MIR4490, MIR4696, MIR5579, GRM5-AS1, POLD3, CTSC, NEU3, ME3, GPR83, PRSS23, SLCO2B1, SNORD15B, SLC36A4, FAT3, TRIM64, CLNS1A, XRRA1, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, DLG2, B3GNT6, FOLH1B, GDPD4, DDIAS, CCDC83, FAM181B, CCDC89, ENDOD1, RAB38, PANX1, FUT4, RNF169, CHRDL2, TSKU, NA NA NA NA NA NA NA NA NA LTS-007 C2CD3, TENM4, LRRC32, CHORDC1, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, C11orf54, AAMDC, GRM5, ANKRD42, OR2AT4, HEPHL1, DNAJB13, LIPT2, VSTM5, GUCY2EP, TRIM77, IZUMO1R, KDM4E, ARRB1, MAP6, MRE11A, MIR326, MTNR1B, MYO7A, NDUFC2, OMP, NOX4, PAK1, PPME1, HIKESHI, CWC15, PCF11, RSF1, SYTL2, ANKRD49, ACER3, PRCP, KDM4D, TMEM126B, THAP12, SMCO4, EMSY, TRIM49, USP35, CREBZF, CCDC90B, CCDC81, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SNORD15A, RPS3, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, KCTD14, SNORA18, SNORA40, SNORD5, THRSP, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ALG8, TAF1D, NARS2, CCDC82, MOGAT2, PAAF1, GDPD5, PICALM, FZD4, TMEM126A, MAML2, DGAT2, CEP295, OR7E2P, JRKL, SERPINH1, EED, MTMR2, INTS4, MED17, CEP57, SPCS2, GAB2) 0.438875279946583 259 0.0636634302768375 0.979740993203081 12924 0.230481140792654 2 1 1 -6.77830881185325 LTS-007 NA NA NA NA LTS-007 chr11 96125366 96125460 95 * JRKL NA 0 NA 1.135 1 NA NA NA NA NA LTS-007 chr11 96125461 101343095 5217635 * c(JRKL-AS1, LOC101054525, ARHGAP42, PGR, CNTN5, TRPC6, TMEM133, JRKL) 0.429393686968973 15 0.0557492686264219 1.07529775414292 768 0.290378367683746 3 2 1 -6.75145990030379 LTS-007 chr11 101343096 101344145 1050 * TRPC6 NA 0 NA 0.909 1 NA NA NA NA NA LTS-007 chr11 101344146 103006642 1662497 * c(WTAPP1, MIR3920, YAP1, TMEM123, ANGPTL5, BIRC2, BIRC3, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CEP126, MMP27, TRPC6, DYNC2H1, DCUN1D5, C11orf70, MMP20) 0.433838972016438 37 0.0893924438026448 0.958236604562599 1592 0.266157214688715 2 1 1 -6.75278282339623 LTS-007 chr11 103006643 103014012 7370 * DYNC2H1 NA 0 NA 1.065 1 NA NA NA NA NA LTS-007 chr11 103014013 110030184 7016172 * c(CASP12, MIR4693, CARD16, KBTBD3, CWF19L2, KDELC2, C11orf65, DDX10, EXPH5, GRIA4, GUCY1A2, ACAT1, C11orf87, DDI1, CARD17, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, CARD18, AASDHPPT, LOC643733, LOC643923, SLN, DYNC2H1, PDGFD, CUL5, CASP1, CASP4, CASP5, MSANTD4, ZC3H12C, ALKBH8) 0.425253568596365 75 0.0947257777638852 1.02925848228727 3435 0.282805315431655 3 2 1 -6.77637075326686 LTS-007 chr11 110030185 110033953 3769 * ZC3H12C NA 0 NA 0.712 1 NA NA NA NA NA LTS-007 chr11 110033954 113846077 3812124 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, DRD2, FDX1, SIK2, ANKK1, TIMM8B, HSPB2, HTR3A, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, ALG9, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ZW10, FDXACB1) 0.441814937089158 33 0.086321808052511 0.965299651347081 3253 0.224091148517103 2 1 1 -6.78053949817437 LTS-007 chr11 113846078 113850006 3929 * HTR3A 0.441 1 NA 0.985314015895403 17 0.244069722439644 2 2 0 -5.76441013499898 LTS-007 chr11 113850007 114277721 427715 * c(RBM7, HTR3A, NNMT, C11orf71, ZBTB16) 0.127035706286226 9 0.213250309365413 0.954318572118356 229 0.403393447802734 8 8 0 -7.32244609278564 LTS-007 chr11 114277722 114277804 83 * RBM7 0.492 1 NA 0.736454243820767 3 0.0630423138323248 0 0 0 -5.76461454201118 LTS-007 chr11 114277805 119371216 5093412 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, NXPE1, NXPE2, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, RNF214, HINFP, REXO2, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, NXPE4, VPS11, NA NA NA NA NA NA NA NA NA LTS-007 TMPRSS4, IFT46, DSCAML1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.447630835196215 125 0.0662172543540847 0.957201672314032 6920 0.45531721149119 2 1 1 -6.82758522325096 LTS-007 NA NA NA NA LTS-007 chr11 119371217 119508750 137534 * USP2-AS1 NA 0 NA 1.057 1 NA NA NA NA NA LTS-007 chr11 119508751 134251777 14743027 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, NA NA NA NA NA NA NA NA NA LTS-007 DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LOC649133, SORL1, SRPRA, ST14, TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.427107164534148 286 0.0762585378387328 1.00086272857615 10503 0.342103969633614 2 1 1 -6.75351736823287 LTS-007 NA NA NA NA LTS-007 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 1.10102934930078 39 0.206194233862813 4 NA NA -5.77139815995061 LTS-007 chr12 90923 90953 31 * LOC100288778 0.255 1 NA 0.739 1 NA NA NA NA NA LTS-007 chr12 90954 1042324 951371 * c(LOC100288778, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, FAM138D, CCDC77) 0.455467418895856 30 0.043266416059349 0.93060403644217 1399 0.225949013315633 1 1 0 -7.08912989261961 LTS-007 chr12 1042325 1136941 94617 * c(ERC1, RAD52) NA 0 NA 0.994 1 NA NA NA NA NA LTS-007 chr12 1136942 6427676 5290735 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, LOC283440, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LRTM2, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CRACR2A, DYRK4, CCND2, CD9, CACNA2D4) 0.439317495361168 125 0.0581980689181905 1.00162067500137 4157 0.328294997672289 2 1 1 -6.78821037119237 LTS-007 chr12 6427677 7309199 881523 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD27, CLSTN3, NCAPD2) 0.438784759968229 42 0.0760355531486742 0.95635615184131 3238 0.223545464696425 2 1 1 -6.76832925685592 LTS-007 chr12 7309200 7309471 272 * CLSTN3 0.083 1 NA 1.02951522518236 7 0.574071548552219 3 3 0 -5.76441053103092 LTS-007 chr12 7309472 10573170 3263699 * c(KLRF2, LINC00987, KLRC4-KLRK1, KLRG1, TMEM52B, SLC2A14, A2ML1, A2M-AS1, CLEC12A, CLECL1, CLEC4C, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, NECAP1, CLEC4E, CD163L1, CLEC9A, CLEC2D, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, OLR1, CLEC4A, CLEC1B, CLEC1A, KLRF1, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, NA NA NA NA NA NA NA NA NA LTS-007 LOC642846, CLEC7A, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, KLRC4, CD163, CLEC6A, GDF3, CD69, CLSTN3, CLEC2B) 0.418836744040912 119 0.0773411195159584 0.944101972928805 3894 0.288220006971213 1 1 0 -6.76295355515257 LTS-007 NA NA NA NA LTS-007 chr12 10573171 10586802 13632 * c(KLRC2, KLRC3) 0.464670921226115 7 0.0131003453244198 1.73757013753953 47 0.461953386766312 15 8 7 -10.038399073278 LTS-007 chr12 10586803 10586996 194 * c(KLRC2, KLRC3) NA 0 NA 1.132 1 NA NA NA NA NA LTS-007 chr12 10586997 11150319 563323 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.428315391365877 31 0.0759111535006975 0.949281727725207 666 0.319901597492014 2 1 1 -6.74059861352048 LTS-007 chr12 11150320 11174202 23883 * c(PRH1-PRR4, TAS2R20, PRB4) 0.284 1 NA 1.027798347958 7 0.680276274409015 3 3 0 -5.76443802602194 LTS-007 chr12 11174203 11286820 112618 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.253993911260967 62 0.0887855201485504 1.25022853953748 181 0.93214370636646 11 11 0 -6.73901834913472 LTS-007 chr12 11286821 11338559 51739 * c(SMIM10L1, PRH1-PRR4, TAS2R30, PRB4) 0.425 1 NA 0.968512946434377 11 0.180367050004353 2 2 0 -5.76468930102192 LTS-007 chr12 11338560 16342256 5003697 * c(LOC100506314, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, MANSC1, PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, FAM234B, PTPRO, PRB2, MIR613, MIR614, SLC15A5, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.429787619359302 72 0.0841442005064713 0.959429035295323 3254 0.24315944047402 2 1 1 -6.7725278775494 LTS-007 chr12 16342257 34180172 17837916 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, RASSF8, FGD4, AEBP2, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, GYS2, IAPP, SLCO1B7, SMCO2, OVCH1, SYT10, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, MGST1, H3F3C, TSPAN11, GOLT1B, YARS2, ERGIC2, PDE3A, TM7SF3, NA NA NA NA NA NA NA NA NA LTS-007 PIK3C2G, PKP2, SLCO1C1, PLEKHA5, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, SKP1P2, C12orf71, SLC15A5, BHLHE41, RERGL, FLJ13224, PYROXD1, SPX, SSPN, TMTC1, ALG10, PPFIBP1, PLCZ1, CAPZA3, MED21, C2CD5) 0.411162428867937 217 0.0893304891657351 1.0332980057319 8562 0.531610471746214 3 2 1 -6.76519059079669 LTS-007 NA NA NA NA LTS-007 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.09005858699976 13 0.271122831468672 3 NA NA -5.76442704595225 LTS-007 chr12 38710341 38710459 119 * character(0) 0.494 1 NA 0.669072964204267 3 0.173885977966406 0 0 0 -5.76452809951939 LTS-007 chr12 38710460 41585448 2874989 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, PDZRN4, KIF21A) 0.436554375761318 63 0.0886029043224763 1.06554867863286 2006 0.384520029748222 3 2 1 -6.74910898635633 LTS-007 chr12 41585449 41587886 2438 * PDZRN4 NA 0 NA 0.813 1 NA NA NA NA NA LTS-007 chr12 41587887 46321231 4733345 * c(YAF2, PRICKLE1, ANO6, ARID2, GXYLT1, PDZRN4, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, TWF1, RNY5, ADAMTS20, PUS7L, RACGAP1P, TMEM117, ZCRB1, SCAF11) 0.390783294183452 27 0.1370847056539 0.992032472821454 1959 0.243073407659763 2 2 0 -6.7454580167375 LTS-007 chr12 46321232 46321514 283 * SCAF11 0.419 1 NA 0.984445849201033 7 0.133210359957475 2 2 0 -5.76441014056881 LTS-007 chr12 46321515 53579266 7257752 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, KRT71, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, KRT74, COL2A1, ASB8, KRT72, BCDIN3D, KRT80, GRASP, KRT78, EIF4B, CELA1, FAIM2, DDN, TNS2, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, LOC283335, ZNF740, C12orf80, LINC00592, TMPRSS12, KRT6C, RACGAP1, SENP1, NA NA NA NA NA NA NA NA NA LTS-007 NR4A1, KRT73, C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, AQP6, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, FIGNL2, ASIC1, ATF1, SLC11A2, DHH, FKBP11, KRT76, CSAD, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, ATG101, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, FAM186B, SOAT2, TUBA1C, SPRYD3, COX14, CCDC65, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.445216083064645 279 0.0606407927265366 0.973866262502249 12030 0.697936860783208 2 1 1 -6.81415068660871 LTS-007 NA NA NA NA LTS-007 chr12 53579267 53579711 445 * ZNF740 NA 0 NA 0.817 1 NA NA NA NA NA LTS-007 chr12 53579712 55249002 1669291 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, DCD, MUCL1, SP7, GTSF1, COPZ1, CBX5, SMUG1, ZNF385A, AMHR2, ZNF740, NCKAP1L, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, ITGA5, ITGB7, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, PDE1B, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, CALCOCO1, RARG, C12orf10, GLYCAM1, SP1, TARBP2, MIR615, MAP3K12, NA NA NA NA NA NA NA NA NA LTS-007 AAAS, MFSD5, NPFF, LACRT, ESPL1) 0.443447802089641 49 0.0483262984559027 0.937306146386853 3221 0.195384458019765 1 1 0 -6.87633956245928 LTS-007 NA NA NA NA LTS-007 chr12 55249003 55250549 1547 * MUCL1 0.436 1 NA 1.27469230571132 3 1.28879258739851 6 6 0 -5.76441014736256 LTS-007 chr12 55250550 55968223 717674 * c(MUCL1, OR2AP1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.425376939064882 27 0.0924584606813619 1.01156816608377 579 0.616384272177707 2 1 1 -6.73423709517456 LTS-007 chr12 55968224 56092600 124377 * c(OR2AP1, OR10P1, METTL7B, ITGA7) 0.438 1 NA 0.930161624625017 181 0.178846428012327 1 1 0 -5.76538597936884 LTS-007 chr12 56092601 59197206 3104606 * c(AGAP2-AS1, MIR1228, LOC100506844, BLOC1S1-RDH5, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MIR26A2, MARS, METTL1, MIP, NA NA NA NA NA NA NA NA NA LTS-007 MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, ATP23, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.419125711582605 88 0.0901710901361558 0.932311404619883 7750 0.186852342169241 1 1 0 -6.76091777010037 LTS-007 NA NA NA NA LTS-007 chr12 59197207 63359168 4161962 * c(LRIG3, MON2, LINC01465, FAM19A2, MIRLET7I, PPM1H, SLC16A7, USP15) 0.460294669096048 15 0.0207463134992587 0.991538436260295 1033 0.239303909698077 2 1 1 -8.23445953147232 LTS-007 chr12 63359169 63544209 185041 * AVPR1A 0.466 1 NA 0.963364320742975 43 0.164027085654626 2 2 0 -5.76648642403543 LTS-007 chr12 63544210 68646663 5102454 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, IFNG, FLJ41278, IL22, TMBIM4, AVPR1A, IL26, CAND1, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, HELB) 0.435650310522938 77 0.0667568377997941 0.993604051843951 3195 0.473187639792035 2 1 1 -6.75569646236155 LTS-007 chr12 68646664 68646980 317 * IL22 NA 0 NA 0.874 1 NA NA NA NA NA LTS-007 chr12 68646981 69656239 1009259 * c(LOC100130075, SNORA70G, LOC100507250, CPSF6, CPM, MDM2, IL22, SLC35E3, MDM1, NUP107, RAP1B) 0.447458996929428 19 0.109739537459711 0.892647861108183 799 0.207027158430884 1 1 0 -6.77279976193851 LTS-007 chr12 69656240 75687186 6030947 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.429595386888583 95 0.0954480716332155 1.00402942294845 3062 0.295750301093274 2 1 1 -6.75070591939119 LTS-007 chr12 75687187 75692402 5216 * CAPS2 NA 0 NA 0.862 1 NA NA NA NA NA LTS-007 chr12 75692403 77175492 1483090 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, ZDHHC17, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.406272626100811 11 0.141188590834452 0.885263216797288 1022 0.395530423005298 1 1 0 -6.74467093916082 LTS-007 chr12 77175493 77191182 15690 * ZDHHC17 NA 0 NA 1.349 1 NA NA NA NA NA LTS-007 chr12 77191183 88900985 11709803 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, ZDHHC17, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.430551477189229 61 0.0880271319326272 1.0330889190183 3756 0.312373232240927 3 2 1 -6.78263165016486 LTS-007 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.784 1 NA NA NA NA NA LTS-007 chr12 88909243 107712880 18803638 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, BTBD11, SPIC, ANO4, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, NA NA NA NA NA NA NA NA NA LTS-007 GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, LOC643339, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, TMEM263, NUAK1, NR1H4) 0.442975269783042 217 0.0744088668606499 0.961447353718058 11279 0.248927602457941 2 1 1 -6.8829517441717 LTS-007 NA NA NA NA LTS-007 chr12 107712881 107914216 201336 * BTBD11 0 1 NA 1.01605406532341 27 0.81126977783081 2 2 0 -5.76458441827136 LTS-007 chr12 107914217 108919659 1005443 * c(PRDM4, PWP1, FICD, ASCL4, BTBD11, CMKLR1, LOC728739, WSCD2, SART3) 0.339178843546169 9 0.231405188168094 0.971715963892116 751 0.977323997780354 4 4 0 -6.75626288905455 LTS-007 chr12 108919660 108924098 4439 * SART3 NA 0 NA 0.966211963526217 17 0.120493531678968 2 NA NA -5.76447975512609 LTS-007 chr12 108924099 108924897 799 * SART3 NA 0 NA 0.766 1 NA NA NA NA NA LTS-007 chr12 108924898 108924904 7 * SART3 0.49 1 NA 0.793 1 NA NA NA NA NA LTS-007 chr12 108924905 125618625 16693721 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5188, ARPC3, MPHOSPH9, CAMKK2, TRAFD1, TMED2, ERP29, GCN1, SDS, RAB35, SNRNP35, CIT, SDSL, IQCD, ALKBH2, FOXN4, SPPL3, COX6A1, BRI3BP, RFLNA, ZNF664, TMEM120B, WDR66, RAD9B, FAM109A, LINC00934, PPTC7, CCDC63, CCDC60, DAO, DTX1, RILPL2, DNAH10, NA NA NA NA NA NA NA NA NA LTS-007 PLBD2, EIF2B1, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, CUX2, MED13L, SIRT4, ABCB9, ISCU, ATP6V0A2, CORO1C, LRRC43, TBX5-AS1, FBXW8, HSPB8, HCAR1, MORN3, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, IFT81, GTF2H3, FAM216A, ACACB, HPD, MMAB, HCAR2, TMEM119, LINC01089, ACADS, RILPL1, IL31, CFAP73, TMEM233, KMT5A, C12orf76, MSI1, MVK, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, GPN3, GLTP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MAPKAPK5-AS1, ARL6IP4, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, VPS29, PLA2G1B, TPCN1, SSH1, RHOF, VSIG10, TESC, PPP1CC, SBNO1, SVOP, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PITPNM2, DHX37, DDX55, PTPN11, PXN, TRPV4, RFC5, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, AACS, TBX5, TBX3, HNF1A, MIR620, UBC, UNG, DDX54, B3GNT4, TCTN1, OGFOD2, VPS37B, C12orf49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 TCTN2, NAA25, SLC8B1, RNF34, CCDC92, ACAD10, CDK2AP1, BRAP, KCTD10, TCHP, COQ5, HVCN1, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DENR, OASL, DYNLL1, SRSF9, HRK, ADAM1A, HCAR3, ANKRD13A, TMEM116, UBE3B, HIP1R, C12orf65, BICDL1, CABP1, SCARB1, NCOR2, SART3, KNTC1, MLEC, GIT2, RBM19, RNF10) 0.435661965240742 379 0.072661819992347 0.932271816780903 19958 0.272112177034636 1 1 0 -6.82516807257629 LTS-007 NA NA NA NA LTS-007 chr12 125618626 125619224 599 * AACS NA 0 NA 1.33 1 NA NA NA NA NA LTS-007 chr12 125619225 132539644 6920420 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, ADGRD1, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, EP400, RAN, SFSWAP, AACS, SNORA49, PUS1, ULK1, TMEM132C, PIWIL1) 0.432708451157414 69 0.0988442181131018 1.01570009568798 2279 0.356258625796777 2 1 1 -6.76910327148811 LTS-007 chr12 132539645 133811953 1272309 * c(LOC100130238, ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, ANHX, ZNF10, ZNF140, NOC4L) 0.440485295273381 106 0.0400322073839595 0.922428765663381 2581 0.217326013202296 1 1 0 -6.8691398102901 LTS-007 chr12 133811954 133812708 755 * ANHX NA 0 NA 0.709189106416817 13 0.130010502534337 0 NA NA -5.76514958261257 LTS-007 chr13 19271620 20276924 1005305 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, MPHOSPH8, TUBA3C, TPTE2) 0.269 1 NA 0.965150785990029 256 0.348166220739596 2 2 0 -5.76651736306802 LTS-007 chr13 20276925 21723247 1446323 * c(MIR4499, SAP18, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, CRYL1, IL17D, PSPC1, XPO4, ZMYM2, IFT88, ZMYM5) 0.452125856768755 26 0.0303677207168806 0.937227035349575 1150 0.216817672897611 2 1 1 -7.28740530729934 LTS-007 chr13 21723248 21727720 4473 * character(0) NA 0 NA 1.195 1 NA NA NA NA NA LTS-007 chr13 21727721 21742548 14828 * SKA3 0.296453217742298 13 0.0538390288326324 1.32009668090643 76 0.491608363596364 11 10 1 -6.73563005221666 LTS-007 chr13 21742549 21746402 3854 * SKA3 NA 0 NA 0.644 1 NA NA NA NA NA LTS-007 chr13 21746403 22141052 394650 * c(SKA3, MICU2, ZDHHC20, MIPEPP3, MRPL57) 0.196650607697678 2 0.301934595566656 0.840356547884053 191 0.20745450466862 0 0 0 -7.05306799606615 LTS-007 chr13 22141053 22178032 36980 * MICU2 NA 0 NA 1.004 1 NA NA NA NA NA LTS-007 chr13 22178033 24890147 2712115 * c(MIR2276, SACS-AS1, LINC00327, LINC00424, SPATA13-AS1, MICU2, SPATA13, FGF9, SACS, C1QTNF9, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1, TNFRSF19, SGCG, BASP1P1) 0.458402974628553 33 0.0316530672552703 0.985202871317292 1029 0.225573332561045 2 1 1 -7.40509648649719 LTS-007 chr13 24890148 24890157 10 * c(SPATA13, C1QTNF9) 0.497 1 NA 2.001 1 NA NA NA NA NA LTS-007 chr13 24890158 24896629 6472 * c(SPATA13, C1QTNF9) 0.340259040914979 4 0.102022873252358 1.53900274585641 53 0.79538388418553 11 9 2 -6.73325294917982 LTS-007 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.599 1 NA NA NA NA NA LTS-007 chr13 24995032 25601832 606801 * c(PARP4, TPTE2P6, ATP12A, CENPJ, RNF17, TPTE2P1) 0.414715141508378 26 0.124980299986099 0.971152042921416 618 0.380078570664702 2 2 0 -6.73497484265432 LTS-007 chr13 25601833 25670851 69019 * PABPC3 0.336 1 NA 0.894700805891386 29 0.361485093615773 1 1 0 -5.76451760885629 LTS-007 chr13 25670852 25741598 70747 * PABPC3 0.250766415713522 13 0.0825453255443988 1.14057069587989 174 0.795118324250026 11 11 0 -6.74300694665444 LTS-007 chr13 25741599 26125651 384053 * c(AMER2, ATP8A2, MTMR6, NUP58) 0.434 1 NA 0.990539511367406 547 0.225963226803705 2 2 0 -5.76454090805572 LTS-007 chr13 26125652 30829726 4704075 * c(PAN3-AS1, LINC00297, MTUS2-AS1, CDK8, CDX2, WASF3, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, MTUS2, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, RNF6, RPL21, SNORA27, URAD, SLC7A1, KATNAL1) 0.442705776103125 53 0.0718635014781667 0.992491080066901 2560 0.237264175586425 2 1 1 -6.78080604626575 LTS-007 chr13 30829727 30854152 24426 * KATNAL1 NA 0 NA 0.788 1 NA NA NA NA NA LTS-007 chr13 30854153 31506999 652847 * c(LINC00426, TEX26-AS1, LINC00398, USPL1, TEX26, ALOX5AP, HMGB1, KATNAL1, MEDAG) 0.410471653349156 4 0.0372066302335126 0.839324164345907 268 0.191216482355121 0 0 0 -6.80200651040046 LTS-007 chr13 31507000 38213237 6706238 * c(MIR548F5, MINOS1P1, SPG20-AS1, CCDC169-SOHLH2, LINC00423, LINC00457, STARD13-AS, FRY, N4BP2L2, POSTN, HSPH1, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, SPG20, NBEA, ALG5, SERTM1, LINC00547, SMAD9, SOHLH2, SUPT20H, RFC3, RFXAP, ZAR1L, BRCA2, TRPC4, CCDC169, CCNA1, STARD13, N4BP2L1, DCLK1, KL) 0.433516733230138 88 0.0790244719249006 0.989991122191238 3444 0.25777584595084 2 1 1 -6.74517847443735 LTS-007 chr13 38213238 40326013 2112776 * c(MIR4305, LINC00366, LINC00571, LHFP, STOML3, FREM2, NHLRC3, UFM1, COG6, TRPC4, PROSER1) 0.452698330766304 18 0.0542035620950399 1.0689232608564 940 0.22300986945652 3 2 1 -6.9190794086792 LTS-007 chr13 40326014 53232718 12906705 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA LTS-007 CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.424729239703552 130 0.102290389832657 0.934973887144933 7100 0.613834095961873 1 1 0 -6.74712908748062 LTS-007 NA NA NA NA LTS-007 chr13 53232719 53233255 537 * SUGT1 NA 0 NA 1.135 1 NA NA NA NA NA LTS-007 chr13 53233256 114780832 61547577 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-007 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, GPC5, RASA3, DZIP1, DIS3, MYO16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, MZT1, ATP4B, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, KLHL1, RAP2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.433614717871581 300 0.0897197307685783 0.994265418148657 13456 0.323677722127622 2 1 1 -6.77080428883552 LTS-007 NA NA NA NA LTS-007 chr13 114780833 114781608 776 * RASA3 NA 0 NA 0.682 1 NA NA NA NA NA LTS-007 chr13 114781609 115064542 282934 * c(RASA3, UPF3A, CDC16) 0.400889749217321 11 0.0546852148873233 0.869926201287474 207 0.183947977945185 2 2 0 -6.82173806354698 LTS-007 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.797763681413911 85 0.113036212932731 0 NA NA -5.76753616253337 LTS-007 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.423 1 NA 1.33412716910543 5 1.13077486707125 7 7 0 -5.7644942998888 LTS-007 chr14 20201562 20404847 203286 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.247864764423431 2 0.00848528137423858 2.06240274811548 195 0.289499120164919 20 18 2 -6.82964119030654 LTS-007 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.926 1 NA NA NA NA NA LTS-007 chr14 20443534 23013103 2569570 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-007 TEP1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.446758737963349 133 0.0498483459960489 1.01657572356578 4269 0.694218146033411 2 1 1 -6.87016484757411 LTS-007 NA NA NA NA LTS-007 chr14 23013104 23013932 829 * character(0) NA 0 NA 0.877 1 NA NA NA NA NA LTS-007 chr14 23013933 23103356 89424 * c(DAD1, ABHD4) 0.357550541613017 12 0.150980708179635 0.91102207599192 197 0.368877147353192 4 4 0 -6.75384681319438 LTS-007 chr14 23103357 23304051 200695 * c(MRPL52, OXA1L, SLC7A7) 0.464 1 NA 0.922922504875014 174 0.150120170674959 1 1 0 -5.76526372584978 LTS-007 chr14 23304052 23497040 192989 * c(MIR4707, PRMT5, MRPL52, REM2, LRP10, MMP14, HAUS4, RBM23, PSMB5, C14orf93, AJUBA) 0.437516274140599 7 0.0693589696194131 0.911484807940798 741 0.17404151396433 1 1 0 -6.76536095630463 LTS-007 chr14 23497041 23502626 5586 * PSMB5 NA 0 NA 1.387 1 NA NA NA NA NA LTS-007 chr14 23502627 33683870 10181244 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, DHRS2, EFS, IRF9, CEBPE, TM9SF1, DHRS4, RIPK3, AP4S1, DTD2, DHRS1, CMTM5, CMA1, PSMB11, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, HECTD1, HEATR5A, NGDN, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NA NA NA NA NA NA NA NA NA LTS-007 NOVA1, NRL, EMC9, PCK2, GMPR2, SLC22A17, C14orf119, RNF31, DHRS4-AS1, G2E3, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, NPAS3, CBLN3, CDH24, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, ARHGAP5-AS1, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, AKAP6, REC8) 0.437887475377008 126 0.0557705805133284 0.989198328124687 7522 0.224791605601628 2 1 1 -6.77780623704433 LTS-007 NA NA NA NA LTS-007 chr14 33683871 36986357 3302487 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, KIAA0391) 0.43518045612149 31 0.0867708761407683 0.943501266458908 1746 0.262338419030289 1 1 0 -6.78263976728696 LTS-007 chr14 36986358 36986433 76 * c(SFTA3, NKX2-1) NA 0 NA 1.426 1 NA NA NA NA NA LTS-007 chr14 36986434 38293140 1306707 * c(SLC25A21-AS1, MIR4503, MIPOL1, SFTA3, NKX2-8, FOXA1, PAX9, NKX2-1, SLC25A21) 0.450196439378083 19 0.0379628165261285 1.08571293992295 698 0.312662566668144 4 2 2 -7.04202297770034 LTS-007 chr14 38293141 38295394 2254 * character(0) NA 0 NA 0.827 1 NA NA NA NA NA LTS-007 chr14 38295395 50044532 11749138 * c(SNORD127, LOC100288846, MIR548Y, LINC00871, LINC00648, SEC23A, NA, C14orf28, TRAPPC6B, RPL10L, LRFN5, CLEC14A, MDGA2, FKBP3, FAM179B, FBXO33, LINC00639, MIA2, PNN, KLHL28, PRPF39, MIS18BP1, FANCM, RPS29, SSTR1, FSCB, GEMIN2, NEMF) 0.40949128324436 24 0.131759765746472 0.99852731458218 1984 0.301046919166382 2 2 0 -6.74702083098216 LTS-007 chr14 50044533 56130818 6086286 * c(KTN1-AS1, MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, LINC01599, NID2, ATG14, SAMD4A, KLHDC2, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, TBPL2, KTN1, LGALS3, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, FBXO34, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, GNPNAT1, BMP4, NA NA NA NA NA NA NA NA NA LTS-007 SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, NEMF, MAPK1IP1L, DLGAP5) 0.439436973048472 78 0.048954696108364 0.930811257376133 5454 0.232522578632557 1 1 0 -6.84370238900669 LTS-007 NA NA NA NA LTS-007 chr14 56130819 56133878 3060 * KTN1 NA 0 NA 1.267 1 NA NA NA NA NA LTS-007 chr14 56133879 60865741 4731863 * c(OTX2-AS1, EXOC5, L3HYPDH, NAA30, C14orf37, DAAM1, TIMM9, SLC35F4, LRRC9, PSMA3-AS1, TOMM20L, KTN1, OTX2, DACT1, JKAMP, DHRS7, TMEM260, PPM1A, C14orf105, AP5M1, ACTR10, PSMA3, PELI2, ARID4A, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, CCDC175, KIAA0586) 0.425926202367175 46 0.118834143339313 1.00719363277224 2987 0.310914376406386 2 1 1 -6.74766376963349 LTS-007 chr14 60865742 60865869 128 * character(0) NA 0 NA 0.556 1 NA NA NA NA NA LTS-007 chr14 60865870 73989983 13124114 * c(MED6, LOC100289511, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, WDR89, GPHB5, RDH12, ADAM21P1, PPP1R36, SLC38A6, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, TMEM30B, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, SYNE2, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, DCAF4, PLEK2, KCNH5, GPX2, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, RAB15, ARG2, HEATR4, FLJ22447, PLEKHD1, MAX, NA NA NA NA NA NA NA NA NA LTS-007 MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, RDH11, COX16, ATP6V1D, SIX4, PIGH, ZFYVE1, EXD2, PPP2R5E, SYNJ2BP, SLC39A9, PRKCH, PSEN1, CCDC177, RHOJ, GALNT16, PLEKHH1, TRMT5, RBM25, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, LINC00643, SIX1, SLC8A3, SLC10A1, SNAPC1, SPTB, ZFP36L1, ZBTB25, DPF3, SGPP1, SYT16, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, CHURC1, AKAP5, RGS6, SUSD6) 0.430316160005821 156 0.0826741118342163 0.950416871731281 9609 0.241676273698516 2 1 1 -6.90732240093939 LTS-007 NA NA NA NA LTS-007 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.447 1 NA NA NA NA NA LTS-007 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.406777735835635 45 0.243221840376977 0 NA NA -5.85477197407761 LTS-007 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.887 1 NA NA NA NA NA LTS-007 chr14 74035793 78366951 4331159 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, ACOT2, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, GPATCH2L, YLPM1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, NA NA NA NA NA NA NA NA NA LTS-007 TGFB3, LINC01220, ZC2HC1C, BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, ALKBH1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.441567799877948 149 0.0477224416264559 0.925493397115876 6405 0.373560646891744 1 1 0 -6.8430273301875 LTS-007 NA NA NA NA LTS-007 chr14 78366952 78366967 16 * ADCK1 0.42 1 NA 1.59 1 NA NA NA NA NA LTS-007 chr14 78366968 88952243 10585276 * c(DIO2-AS1, LINC00911, PTPN21, CEP128, DIO2, FLRT2, GALC, LOC283585, LINC01146, GTF2A1, KCNK10, SPATA7, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.431863088744025 45 0.0997352910600269 1.00167481620634 2048 0.296371734254657 2 1 1 -6.75760134727542 LTS-007 chr14 88952244 88959295 7052 * PTPN21 NA 0 NA 0.757 1 NA NA NA NA NA LTS-007 chr14 88959296 94731855 5772560 * c(SNORA11B, FBLN5, PTPN21, FOXN3, CHGA, IFI27L1, TTC8, TC2N, SLC24A4, PRIMA1, TTC7B, EML5, LINC00521, TMEM251, FAM181A-AS1, FOXN3-AS2, ITPK1-AS1, COX8C, IFI27, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, ASB2, CPSF2, NRDE2, UBR7, PPP4R3A, BTBD7, TDP1, LGMN, KCNK13, PSMC1, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, IFI27L2, GON7, FAM181A, EFCAB11, RPS6KA5, NA NA NA NA NA NA NA NA NA LTS-007 TRIP11, GOLGA5) 0.435965456759553 107 0.0741557252834315 0.921745157479919 5324 0.222966538392484 1 1 0 -6.76515902366829 LTS-007 NA NA NA NA LTS-007 chr14 94731856 94732050 195 * PPP4R4 NA 0 NA 1.165 1 NA NA NA NA NA LTS-007 chr14 94732051 105639603 10907553 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, LINC00239, LINC00637, GSC, SERPINA12, SYNE3, DIO3, DYNC1H1, LINC00638, EIF5, EML1, AKT1, RCOR1, PPP1R13B, NA NA NA NA NA NA NA NA NA LTS-007 DICER1, NUDT14, SERPINA11, KIF26A, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, GPR132, CCDC85C, SERPINA9, HSP90AA1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, SERPINA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SERPINA4, CDCA4, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MIR668, MIR770, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TCL1A, AMN, SETD3, APOPT1, HHIPL1, SERPINA6, DLK1, CCNK, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2) 0.430180751033757 203 0.0766736640154118 0.96279180684493 10413 0.272081383526899 2 1 1 -6.78490561930463 LTS-007 NA NA NA NA LTS-007 chr14 105639604 105642260 2657 * NUDT14 NA 0 NA 1.445 1 NA NA NA NA NA LTS-007 chr14 105642261 105852034 209774 * c(PACS2, NUDT14, BRF1, BTBD6) 0.349623993406565 2 0.0544472221513642 1.38071930506238 508 0.267777752653858 8 7 1 -6.74249199736795 LTS-007 chr14 105852035 106091697 239663 * c(CRIP1, CRIP2, PACS2, C14orf80, TEX22, TMEM121, MTA1) 0.482059601276935 3 0.0160416125540213 0.978820688706805 465 0.220705535138197 2 1 1 -10.6717285990373 LTS-007 chr14 106091698 106303979 212282 * ELK2AP NA 0 NA 0.948491284177143 81 0.194490886517265 2 NA NA -5.76926686313431 LTS-007 chr14 106303980 106304708 729 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-007 chr14 106304709 106363932 59224 * FAM30A 0.1 1 NA 0.796974242367693 161 0.254037911045669 0 0 0 -5.76576034810843 LTS-007 chr14 106363933 106866465 502533 * c(LINC00226, ADAM6, FAM30A) 0.249783117716842 8 0.165840661479626 0.757866191330594 266 0.611627598793267 7 7 0 -7.06842119696319 LTS-007 chr14 106866466 107048866 182401 * LINC00221 0.323846983793092 30 0.144071278655162 1.43740843925284 104 0.56383006619012 9 8 1 -6.73403368025967 LTS-007 chr14 107048867 107078455 29589 * character(0) NA 0 NA 0.975 1 NA NA NA NA NA LTS-007 chr14 107078456 107113858 35403 * character(0) 0.392618993627888 4 0.0198158185969358 1.17786126738222 16 0.533630818075568 8 6 2 -6.75194185008648 LTS-007 chr14 107113859 107283157 169299 * character(0) NA 0 NA 0.849551329061732 72 0.268320072281889 0 NA NA -5.76470108734013 LTS-007 chr15 20169987 20445987 276001 * character(0) 0.415 1 NA 1.29222194982025 23 0.436374521850392 6 6 0 -5.76447882542357 LTS-007 chr15 20445988 22413825 1967838 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.338418086170735 28 0.085601350864582 1.30540961750459 215 0.627257279352895 6 6 0 -6.7461113930149 LTS-007 chr15 22413826 22413879 54 * OR4N3P NA 0 NA 0.781 1 NA NA NA NA NA LTS-007 chr15 22413880 22489958 76079 * OR4N3P 0.30286024261217 8 0.0652510262645074 0.960864705920109 50 0.727619492676254 7 7 0 -6.7482027430452 LTS-007 chr15 22489959 22869860 379902 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, REREP3) 0.409 1 NA 1.01397505230357 110 0.27153489769682 2 2 0 -5.76696737661087 LTS-007 chr15 22869861 23182267 312407 * c(TUBGCP5, NIPA1, CYFIP1, LOC283683, NIPA2) 0.43192540646761 10 0.0784491342633344 0.989086482493774 500 0.329294565582008 2 1 1 -6.74092413522 LTS-007 chr15 23182268 23686185 503918 * c(HERC2P7, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.254145173263995 2 0.10040916292849 1.46444503908967 53 0.378951254088605 10 10 0 -6.75235803782696 LTS-007 chr15 23686186 23686393 208 * character(0) NA 0 NA 0.91 1 NA NA NA NA NA LTS-007 chr15 23686394 28519571 4833178 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-007 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, MIR4508, MIR4715, PWAR1, NPAP1, GABRA5, GABRB3, GABRG3, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, NDN, OCA2, LINC00929, MAGEL2, ATP10A, SNRPN, SNORD116-19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, HERC2, SNURF) 0.415423584601608 46 0.119550510821498 1.0252801314768 1891 0.283193314599475 3 2 1 -6.77284491162481 LTS-007 NA NA NA NA LTS-007 chr15 28519572 28520001 430 * HERC2 NA 0 NA 0.761 1 NA NA NA NA NA LTS-007 chr15 28520002 29346174 826173 * c(LOC100289656, APBA2, HERC2P9, WHAMMP2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.382653196881458 2 0.0883883476483184 0.760076022100591 99 0.277197038410377 0 0 0 -6.91644433831071 LTS-007 chr15 29346175 29346350 176 * APBA2 NA 0 NA 1.002 1 NA NA NA NA NA LTS-007 chr15 29346351 30337510 991160 * c(FAM189A1, APBA2, NSMCE3, TJP1) 0.418528135967026 19 0.114042492337197 1.0093064025629 565 0.357291352593787 2 1 1 -6.73664214383502 LTS-007 chr15 30337511 30664587 327077 * c(DKFZP434L187, GOLGA8T, CHRFAM7A) NA 0 NA 0.614497419660127 61 0.313183605081433 0 NA NA -5.95024337251791 LTS-007 chr15 30664588 30665163 576 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.893 1 NA NA NA NA NA LTS-007 chr15 30665164 34673808 4008645 * c(WHAMMP1, LOC100288637, TMCO5B, LOC100996255, CHRM5, CHRNA7, OTUD7A, PGBD4, FAN1, GOLGA8A, LPCAT4, NUTM1, DKFZP434L187, GREM1, LOC283710, FMN1, HERC2P10, MIR211, TRPM1, EMC4, KLF13, MTMR10, NOP10, EMC7, AVEN, RYR3, SCG5, GOLGA8O, KATNBL1, CHRFAM7A, ARHGAP11B, ARHGAP11A, SLC12A6) 0.413267977662868 94 0.130964296192301 0.959744555327301 2896 0.331400422222332 2 2 0 -6.7487781989798 LTS-007 chr15 34673809 34678835 5027 * c(MIR1233-2, GOLGA8A) NA 0 NA 0.191 1 NA NA NA NA NA LTS-007 chr15 34678836 34820081 141246 * c(MIR1233-2, GOLGA8A, GOLGA8B) NA 0 NA 0.405123361850619 61 0.157076614559679 0 NA NA -7.18139950658739 LTS-007 chr15 34820082 35043179 223098 * c(MIR1233-2, GOLGA8B) NA 0 NA 0.662 1 NA NA NA NA NA LTS-007 chr15 35043180 38236530 3193351 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, TMCO5A, CSNK1A1P1, MEIS2, ZNF770, GJD2, ACTC1, ANP32AP1, C15orf41, DPH6, AQR) 0.39859627720713 15 0.0553243251416676 0.987337980789935 919 0.242454075815745 2 2 0 -6.75283603672637 LTS-007 chr15 38236531 38988815 752285 * c(RASGRP1, TMCO5A, SPRED1, FAM98B, C15orf53) 0.404100327742052 7 0.0259027485211971 0.928092475052118 543 0.258840896338274 2 2 0 -6.77523626924625 LTS-007 chr15 38988816 38991164 2349 * C15orf53 0.492 1 NA 0.795987781907113 25 0.202629037076789 0 0 0 -5.76449855445636 LTS-007 chr15 38991165 41864784 2873620 * c(SRP14-AS1, ANKRD63, RAD51-AS1, GPR176, CHP1, CHST14, OIP5, EXD1, FSIP1, RHOV, BAHD1, RTF1, RPAP1, GCHFR, RPUSD2, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, EIF2AK4, NDUFAF1, NUSAP1, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, BUB1B, THBS1, OIP5-AS1, TYRO3, CHAC1, ZFYVE19, DISP2, C15orf57, KNSTRN, BMF) 0.433558708112774 80 0.0983828706661192 0.906064573374704 4304 0.192736823291727 1 1 0 -6.74377940337746 LTS-007 chr15 41864785 43893733 2028949 * c(JMJD7, PLA2G4B, MIR4310, CKMT1B, TGM7, PLA2G4E, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, EPB42, MAPKBP1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, TUBGCP4, PLA2G4D, EHD4, MAP1A, SPTBN5, HAUS2, STARD9, ZNF106, MIR626, MIR627, TP53BP1, TYRO3, TMEM62, CAPN3, JMJD7-PLA2G4B, SNAP23, TGM5, PPIP5K1, LCMT2) 0.432359220557084 56 0.0947441513803318 0.939183778116456 4732 0.199746820341802 1 1 0 -6.76861547531643 LTS-007 chr15 43893734 43921089 27356 * STRC 0.331 1 NA 0.951656053824705 73 0.450517296954738 2 2 0 -5.76450729519041 LTS-007 chr15 43921090 45366571 1445482 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CATSPER2, TRIM69, TERB2, STRC, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.289217784589385 35 0.135939513242119 0.963930588250354 1917 0.423931458223643 4 4 0 -7.04458455003556 LTS-007 chr15 45366572 45397993 31422 * c(DUOX2, SORD) 0.429 1 NA 0.977594289304435 125 0.17653019370726 2 2 0 -5.76444667622248 LTS-007 chr15 45397994 59499179 14101186 * c(MIR147B, GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR2116, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, ADAM10, GNB5, ARPP19, SLC27A2, LEO1, NA, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, BLOC1S6, GATM, HMGN2P46, SLC24A5, PRTG, LINC00926, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, AQP9, NA NA NA NA NA NA NA NA NA LTS-007 USP50, TEX9, TNFAIP8L3, LIPC, SHC4, CTXN2, DUOXA2, UNC13C, MYO1E, MYO5A, NEDD4, DUOX2, MYEF2, RSL24D1, DUOX1, FAM63B, RNF111, ZNF280D, TRPM7, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, SQRDL, RAB27A, RFX7, SLC12A1, HSP90AB4P, MIR628, TCF12, SLC30A4, SPATA5L1, SLTM, ATP8B4, SEMA6D, POLR2M, C15orf48, SPPL2A, CGNL1, ALDH1A2, SHF, DUOXA1, USP8, CCNB2, SLC28A2, CCPG1, LDHAL6B, COPS2, PIGB, SECISBP2L NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ) 0.443366787980874 211 0.0671168135914293 0.947963557075397 10586 0.255368317505494 2 1 1 -6.97498808187287 LTS-007 NA NA NA NA LTS-007 chr15 59499180 59500155 976 * c(MYO1E, LDHAL6B) 0.076 1 NA 0.897760554654136 17 0.235821421094562 1 1 0 -5.7644125020544 LTS-007 chr15 59500156 59931502 431347 * c(FAM81A, GTF2A2, MYO1E, GCNT3, LDHAL6B) 0.220008700186447 9 0.221884416858067 0.898758912858984 271 0.250316242021055 3 3 0 -7.16949795638956 LTS-007 chr15 59931503 60674672 743170 * c(FOXB1, GTF2A2, ANXA2, BNIP2) 0.432 1 NA 0.908204500433307 275 0.157207168249958 1 1 0 -5.76462308165874 LTS-007 chr15 60674673 67665905 6991233 * c(USP3-AS1, MIR1272, MIR4311, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, MGC15885, LCTL, ZNF609, DAPK2, FBXL22, ANXA2, RBPMS2, ANKDD1A, C2CD4B, KBTBD13, UBAP1L, MIR190A, SMAD3, SMAD6, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, PPIB, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, SNX1, SCARNA14, NA NA NA NA NA NA NA NA NA LTS-007 TPM1, CA12, ICE2, AAGAB, SNX22, PIF1, PLEKHO2, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101, USP3) 0.446200926019487 114 0.0672007035666365 0.930915104070045 7079 0.215481525271258 1 1 0 -6.8544047147811 LTS-007 NA NA NA NA LTS-007 chr15 67665906 67677210 11305 * IQCH NA 0 NA 1.48 1 NA NA NA NA NA LTS-007 chr15 67677211 74181524 6504314 * c(NR2E3, HCN4, ADPGK-AS1, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, C15orf61, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, HEXA, TMEM202, C15orf59, SKOR1, LINC00593, MYO9A, NEO1, PKM, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, MAP2K5, THAP10, PARP6, BBS4, CELF6, RPLP1, IQCH, MIR629, MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, HEXA-AS1, CD276, ANP32A, NA NA NA NA NA NA NA NA NA LTS-007 ADPGK, PIAS1, CALML4, KIF23) 0.434801773617183 57 0.0894882484829229 0.989951893043451 4715 0.222553793244573 2 1 1 -6.74536711056778 LTS-007 NA NA NA NA LTS-007 chr15 74181525 86311776 12130252 * c(DNM1P35, NA, UBE2Q2P2, LOXL1-AS1, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, NA NA NA NA NA NA NA NA NA LTS-007 SEC11A, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, LOC338963, IDH3A, GOLGA6A, TMC3, IL16, IREB2, ISLR, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, LOXL1, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, NMB, SCAPER, HDGFRP3, PDE8A, BTBD1, TM6SF1, PML, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, IMP3, DNAJA4, PSMA4, C15orf39, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, STRA6, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, SEMA7A, LINGO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 WDR73, UBL7, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, ARNT2) 0.440114708716098 203 0.0554961627009082 0.944414721658338 10918 0.439333607251671 1 1 0 -6.84826722932686 LTS-007 NA NA NA NA LTS-007 chr15 86311777 89007972 2696196 * c(MIR1276, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.423824884062364 32 0.0933648270357706 1.08065662858898 698 0.317189754963111 3 2 1 -6.73971867809591 LTS-007 chr15 89007973 91841155 2833183 * c(MIR1179, PRC1-AS1, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, HDDC3, GDPGP1, MIR7-2, MIR9-3, MAN2A2, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, DET1, FANCI, MESP1, UNC45A, WDR93, RLBP1, BLM, AEN, CRTC3, MRPS11, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B NA NA NA NA NA NA NA NA NA LTS-007 ) 0.439759842838591 127 0.0713613695872377 0.941104902684272 4309 0.235864181226451 1 1 0 -6.80402060193876 LTS-007 NA NA NA NA LTS-007 chr15 91841156 101434380 9593225 * c(LINC00930, MIR1469, MIR3175, LINC01578, MIR4714, SPATA8-AS1, CHD2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, SYNM, SLCO3A1, FAM169B, IGF1R, SPATA41, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, LINS1, MCTP2, RGMA, NR2F2-AS1, TTC23, NR2F2, HSP90B2P, ASB9P1, ST8SIA2, ARRDC4, LINC00923, SV2B) 0.442424696931586 132 0.0779439865278568 1.01954718558214 3357 0.393767646586073 2 1 1 -6.81353408165284 LTS-007 chr15 101434381 101436112 1732 * ALDH1A3 NA 0 NA 0.601 1 NA NA NA NA NA LTS-007 chr15 101436113 102516492 1080380 * c(FAM138E, LOC100507472, TARSL2, ALDH1A3, CHSY1, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.445915820450689 29 0.0413815896334485 0.921149348973049 1039 0.213521437221758 1 1 0 -6.93862974461299 LTS-007 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.894 1 NA NA NA NA NA LTS-007 chr16 81704 96405 14702 * character(0) 0.424 1 NA 0.782420331970173 3 0.266011904495519 0 0 0 -5.76498571403722 LTS-007 chr16 96406 2672816 2576411 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-007 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 UBE2I, SNHG9, CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.443848498994457 260 0.0676000672863504 0.927843278715154 8262 0.237879170760871 1 1 0 -6.8074322591825 LTS-007 NA NA NA NA LTS-007 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.522 1 NA NA NA NA NA LTS-007 chr16 2692191 2747930 55740 * c(ERVK13-1, KCTD5, FLJ42627) NA 0 NA 0.69605379704318 74 0.294461911441688 0 NA NA -5.77757058324604 LTS-007 chr16 2747931 4897389 2149459 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, LINC01569, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, BICDL2, C16orf71, DNASE1, NLRC3, CLUAP1, MGRN1, SRRM2, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, MEFV, SMIM22, OR1F1, OR2C1, PAM16, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, NMRAL1, SRL, PRSS22, MMP25, NA NA NA NA NA NA NA NA NA LTS-007 C16orf90, TCEB2, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32) 0.437154521209722 116 0.0711717199324347 0.925170920155354 4369 0.579004725356385 1 1 0 -6.76326268964821 LTS-007 NA NA NA NA LTS-007 chr16 4897390 4902235 4846 * UBN1 NA 0 NA 1.406 1 NA NA NA NA NA LTS-007 chr16 4902236 4950940 48705 * c(UBN1, PPL) 0.448313964237834 8 0.039083929836041 0.964457757411864 324 0.167655907915836 2 1 1 -6.9763679771448 LTS-007 chr16 4950941 5050897 99957 * c(PPL, SEC14L5) 0.411 1 NA 0.980028286697506 63 0.117235966705619 2 2 0 -5.76453202169668 LTS-007 chr16 5050898 27974487 22923590 * c(MIR365A, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, MIR548AA2, LCMT1-AS2, NAGPA-AS1, MIR4718, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, RMI2, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, TEKT5, GSG1L, C16orf89, ITPRIPL2, C16orf82, ABAT, EEF2KMT, NSMCE1, EMP2, PDILT, ERCC4, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, KIAA0556, NA NA NA NA NA NA NA NA NA LTS-007 CLEC16A, NOMO1, CARHSP1, MPV17L, PDZD9, ANKS4B, TMEM186, RSL1D1, TNRC6A, GP2, NOMO2, IL21R-AS1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, BCAR4, KNOP1, CRYM-AS1, FLJ21408, NOMO3, CIITA, ABCC1, MYH11, NUBP1, NDUFAB1, IL21R, PARN, TXNDC11, METTL9, NAGPA, BFAR, LCMT1, GDE1, GPRC5B, SYT17, PLK1, PMM2, RRN3, RBFOX1, NDE1, ACSM5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ARHGAP17, CPPED1, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, ALG1, UBFD1, PRM1, PRM2, C16orf62, TMEM159, LYRM1, MIR193B, USP31, MKL2, PRM3, RBBP6, TNFRSF17, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, NPIPA3, ABCC6P1, LOC653786, MIR548D2, TNP2, CLEC19A, SHISA9, ABCC6P2, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, TVP23A, USP7, METTL22, PALB2, KDM8, TMC5, TMC7, ATF7IP2, LOC81691, SNN, PLA2G10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DCTN5, SOCS1, C16orf45, COG7, SNX29, NPIPA1, LITAF, KIAA0430, SEC14L5, CCP110, HS3ST4, HS3ST2) 0.423642459928943 311 0.0977800939302441 0.973892905311839 12986 0.266973343731048 2 1 1 -6.75876214855259 LTS-007 NA NA NA NA LTS-007 chr16 27974488 28123226 148739 * c(GSG1L, XPO6) 0.458 1 NA 0.945728213135551 51 0.13566836728712 1 1 0 -5.77105847870218 LTS-007 chr16 28123227 28608392 485166 * c(SGF29, CLN3, XPO6, IL27, NUPR1, SBK1, APOBR, SULT1A2) 0.45139365677759 3 0.00793725393319379 0.97764296830761 487 0.219550280734148 2 1 1 -10.5518433544514 LTS-007 chr16 28608393 28712734 104342 * SULT1A1 0.493 1 NA 0.545944348389052 80 0.296178341758107 0 0 0 -5.89227622798339 LTS-007 chr16 28712735 28734495 21761 * character(0) NA 0 NA 1.194 1 NA NA NA NA NA LTS-007 chr16 28734496 31805897 3071402 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, NA NA NA NA NA NA NA NA NA LTS-007 ITGAL, ITGAM, ITGAX, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.440130667629569 111 0.0714234010062683 0.948463151352588 6613 0.207174462614387 2 1 1 -6.82904628077073 LTS-007 NA NA NA NA LTS-007 chr16 31805898 32890852 1084955 * c(ZNF267, SLC6A10P, LOC390705, NA, TP53TG3D) NA 0 NA 0.94815713932984 102 0.18961475417021 2 NA NA -5.79091636418141 LTS-007 chr16 32890853 32893876 3024 * c(SLC6A10P, LOC390705) 0.246 1 NA 1.37270025071743 19 0.386255036493214 7 7 0 -5.76441225766811 LTS-007 chr16 32893877 33965644 1071768 * c(SLC6A10P, LOC390705, LINC00273) 0.325182954902912 76 0.098084098358894 1.00814870729358 253 0.423732904858284 5 5 0 -6.87261737594683 LTS-007 chr16 33965645 34682380 716736 * c(LINC01566, UBE2MP1) NA 0 NA 1.06226817343473 113 0.258417901448168 3 NA NA -5.76446710480416 LTS-007 chr16 46508169 46564987 56819 * ANKRD26P1 0.429 1 NA 1.03526365685546 65 0.34459142961685 3 3 0 -5.76455906016068 LTS-007 chr16 46564988 55735912 9170925 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, MMP2, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.44274820598289 58 0.0683463321117355 0.986786261678828 4555 0.222548122666215 2 1 1 -6.78330818087658 LTS-007 chr16 55735913 55737258 1346 * SLC6A2 0 1 NA 1.03775236410709 23 0.513250907521016 3 3 0 -5.76441140640627 LTS-007 chr16 55737259 55862901 125643 * c(CES1, CES1P2, CES1P1, SLC6A2) 0.343150024744541 10 0.0486351496119605 1.09733534683272 84 0.434526640682703 5 5 0 -6.73813010573914 LTS-007 chr16 55862902 55883618 20717 * c(CES1, CES5A) 0.482 1 NA 1.02356294431825 23 0.225154211535854 3 3 0 -5.76469593651973 LTS-007 chr16 55883619 56401549 517931 * c(MIR3935, CES5A, DKFZP434H168, AMFR, GNAO1, LOC283856) 0.474049537936423 5 0.0300865418418269 0.996067652649423 211 0.27794499576811 2 1 1 -8.10054022612894 LTS-007 chr16 56401550 70154614 13753065 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, CETP, NFAT5, NUDT21, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, LRRC29, AMFR, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NA NA NA NA NA NA NA NA NA LTS-007 NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR138-2, MIR140, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, POLR2C, PRMT7, DUS2, CHTF8, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, MT1IP, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, COG8, MT4, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.453433767813386 189 0.0427700418888046 0.949621046193612 11435 0.699587344499097 2 1 1 -7.04632082367593 LTS-007 NA NA NA NA LTS-007 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.543 1 NA NA NA NA NA LTS-007 chr16 70161183 70219827 58645 * c(CLEC18C, PDPR) 0.351281383815126 4 0.171868166530823 0.656916308215697 116 0.177807405535507 0 0 0 -6.90106404943337 LTS-007 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 1.463 1 NA NA NA NA NA LTS-007 chr16 70237374 84256315 14018942 * c(SNORD111B, LOC100129617, VAC14-AS1, SYCE1L, SNORA70D, MIR3182, SMG1P7, LOC100506083, LINC01568, MIR4720, MIR4719, CDH13, CLEC3A, CHST4, MPHOSPH6, CFDP1, DDX19B, GABARAPL2, PKD1L2, EXOSC6, C16orf46, DNAAF1, CDYL2, TMEM170A, SLC38A8, IL34, CTRB1, AARS, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, FUK, MLKL, MON1B, PHLPP2, ATMIN, MLYCD, SF3B3, ADAT1, CHST5, COG4, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, OSGIN1, NA NA NA NA NA NA NA NA NA LTS-007 HP, HPR, HSBP1, HSD17B2, ATXN1L, PKD1L3, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, HYDIN, TXNL4B, RFWD3, DDX19A, ZNF821, VAC14, CMTR2, CENPN, CMC2, PSMD7, VAT1L, ST3GAL2, TAT, SNORD71, SNORD111, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, ZNRF1, CNTNAP4, MBTPS1, TAF1C, MARVELD3, MTSS1L, KCNG4, SDR42E1, BCAR1, DHX38, IST1) 0.445164102392997 294 0.0636386640284997 0.984375574424291 8543 0.248044512500903 2 1 1 -6.8054518188236 LTS-007 NA NA NA NA LTS-007 chr16 84256316 84256410 95 * KCNG4 0.371 1 NA 0.802 1 NA NA NA NA NA LTS-007 chr16 84256411 90141355 5884945 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, NA NA NA NA NA NA NA NA NA LTS-007 FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.440511894424532 252 0.0545022909190432 0.932454166216167 6318 0.318391888310962 1 1 0 -6.82435794392647 LTS-007 NA NA NA NA LTS-007 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.895846612928021 20 0.154578407969957 1 NA NA -5.7645567586787 LTS-007 chr17 6004 63098 57095 * c(DOC2B, RPH3AL) 0.451 1 NA 0.937982584593195 47 0.220419403021812 1 1 0 -5.76499597083185 LTS-007 chr17 63099 8076655 8013557 * c(C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, MIR4314, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, RTN4RL1, KCTD11, CTNS, TRPV3, NA NA NA NA NA NA NA NA NA LTS-007 SLC16A11, FBXO39, DLG4, DPH1, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, SLC13A5, TMEM102, TUSC5, GPS2, ABR, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, OR3A4P, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFN1, PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RPA1, SRR, NXN, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 NEURL4, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, SCARF1, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, TMEM88, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.445995429149461 329 0.0602303052712415 0.922625263941641 14298 0.221957835722143 1 1 0 -6.84644039655475 LTS-007 NA NA NA NA LTS-007 chr17 8076656 8172277 95622 * c(NA, MIR4521, LINC00324, PFAS, BORCS6, CTC1, TMEM107, AURKB) 0.368 1 NA 0.923534751965912 397 0.180344937067776 1 1 0 -5.76472230604163 LTS-007 chr17 8172278 8633557 461280 * c(LOC100128288, KRBA2, CCDC42, ODF4, ARHGEF15, RANGRF, SLC25A35, MYH10, PFAS, RPL26, RNF222, NDEL1) 0.448116459615833 3 0.0130511813003013 0.934896406612693 677 0.219050465138193 2 1 1 -8.41821935090722 LTS-007 chr17 8633558 14111915 5478358 * c(MIR744, LINC00675, MAGOH2P, COX10-AS1, TMEM220-AS1, USP43, COX10, CFAP52, CCDC42, PIK3R6, MFSD6L, DNAH9, DHRS7C, PIK3R5, LINC00670, SPDYE4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, GAS7, MYH13, GLP2R, MYOCD, CDRT15P1, NTN1, STX8, ARHGAP44, HS3ST3A1) 0.427552521847605 73 0.109060574471757 0.997168234608689 3612 0.243846901845586 2 1 1 -6.74212440421102 LTS-007 chr17 14111916 14111975 60 * COX10 NA 0 NA 0.777 1 NA NA NA NA NA LTS-007 chr17 14111976 21318543 7206568 * c(FAM106CP, LOC100287072, MIR1288, MIR1180, TVP23C-CDRT4, MIR4731, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, TRIM16, RAI1, GRAP, AKAP10, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, SLC47A2, CDRT15, TRIM16L, USP32P1, DRG2, TVP23C, CENPV, FLCN, PLD6, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, MPRIP, USP22, TNFRSF13B, TBC1D28, CDRT15L2, NATD1, DHRS7B, SNORD49A, B9D1, CDRT4, NA NA NA NA NA NA NA NA NA LTS-007 CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, CDRT1, KCNJ12, LRRC75A, LLGL1, KRT16P2, GRAPL, MEIS3P1, MFAP4, TVP23B, MYO15A, TRPV2, RASD1, PMP22, ALKBH5, TTC19, MED9, SLC47A1, MAPK7, MAP2K3, PRPSAP2, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, FAM83G, KRT16P3, EVPLL, TEKT3, SHMT1, LGALS9C, SREBF1, SNORA59A, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, ZNF286B, UBB, RNF112, GID4, FAM106A, DRC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MGC12916, COPS3, TMEM11, ATPAF2, SPECC1, CDRT7, PIGL, NCOR1, ULK2, CCDC144A, HS3ST3B1) 0.413241529909592 177 0.101922956051179 0.950912201031161 7397 0.388612577825411 2 2 0 -6.77001691323294 LTS-007 NA NA NA NA LTS-007 chr17 21318544 21318546 3 * KCNJ12 0.448 1 NA 2.801 1 NA NA NA NA NA LTS-007 chr17 21318547 21318629 83 * KCNJ12 0.408676501407516 6 0.0778778958798109 1.68571487018438 6 0.54682565777403 9 6 3 -6.73307056266793 LTS-007 chr17 21318630 21318663 34 * KCNJ12 0.335 1 NA 1.03452284974586 3 0.114168004858337 3 3 0 -5.76441097296563 LTS-007 chr17 21318664 21320350 1687 * KCNJ12 0.298661772309494 30 0.0633158112482418 1.56535255335269 80 0.683328765949025 11 10 1 -6.73304781997548 LTS-007 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 1.106 1 NA NA NA NA NA LTS-007 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.326375583377432 7 0.0200487501094802 1.03574743255859 203 0.44896441696457 6 6 0 -6.83159848510442 LTS-007 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.85 1 NA NA NA NA NA LTS-007 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.492 1 NA 0.984138290142531 17 0.152186249088953 2 2 0 -5.76441043413922 LTS-007 chr17 25630389 34432661 8802273 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, RFFL, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, TMEM199, PROCA1, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, LYRM9, RDM1, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, GAS2L2, NA NA NA NA NA NA NA NA NA LTS-007 HEATR9, TMEM98, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LGALS9, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, TBC1D3P5, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RAD51D, RPL23A, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, SNORD7, MIR632, TNFAIP1, VTN, ZNF207, MMP28, TEFM, ATAD5, TAF15, RAB34, NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, ZNF830, SLFN11, RASL10B, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100 NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ) 0.436235516162371 183 0.0964956961936375 0.9320999652236 10199 0.222276957740443 1 1 0 -6.80102953796569 LTS-007 NA NA NA NA LTS-007 chr17 34432662 34625714 193053 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.488326142082002 39 0.418105564610057 0 NA NA -5.95123093587395 LTS-007 chr17 34625715 34640930 15216 * c(CCL4L1, CCL3L3, CCL3L1, NA) NA 0 NA 2.639 1 NA NA NA NA NA LTS-007 chr17 34640931 36214044 1573114 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.437013207686106 19 0.0423877257970466 0.9214230473191 1556 0.455538640332098 1 1 0 -6.81418307244443 LTS-007 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.258 1 NA NA NA NA NA LTS-007 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) 0.229323008656767 2 0.234052344572747 0.608872096723152 67 0.267534868615141 0 0 0 -7.27102221888181 LTS-007 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.901 1 NA NA NA NA NA LTS-007 chr17 36421727 39190369 2768643 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, MED1, NA NA NA NA NA NA NA NA NA LTS-007 CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, KRTAP1-4, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, TNS4, FBXL20, KRTAP3-3, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.439895361432656 155 0.0669161434599372 0.929276827617277 5895 0.225921223764622 1 1 0 -6.79100725371852 LTS-007 NA NA NA NA LTS-007 chr17 39190370 39190939 570 * KRTAP1-3 0.381 1 NA 1.07692327166461 11 0.430631502457833 3 3 0 -5.76441064661741 LTS-007 chr17 39190940 39432298 241359 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP9-6, KRTAP4-11, KRTAP4-8, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP2-4) 0.311524437651109 22 0.143078165601399 1.04694728460139 354 0.558363077679086 6 6 0 -6.75824291727536 LTS-007 chr17 39432299 39616430 184132 * c(KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP29-1, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRTAP17-1, KRT38, KRT37) 0.487 1 NA 1.00788733878226 343 0.195223020079401 2 2 0 -5.76590940448209 LTS-007 chr17 39616431 44172146 4555716 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, GJC1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KAT2A, GFAP, TUBG2, CCR10, C17orf105, NA NA NA NA NA NA NA NA NA LTS-007 FAM171A2, MEIOC, KRT42P, PTRF, NKIRAS2, COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT32, LINC00671, CCDC103, KRT35, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, FKBP10, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, VPS25, TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.438674935480699 113 0.0869369185840807 0.936741502593258 8534 0.245919709405151 1 1 0 -6.79069588415207 LTS-007 NA NA NA NA LTS-007 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.51 1 NA NA NA NA NA LTS-007 chr17 44248158 44364336 116179 * character(0) 0.444 1 NA 0.545546444498059 68 0.247752972410052 0 0 0 -5.96605310894544 LTS-007 chr17 44364337 44408491 44155 * character(0) NA 0 NA 1.12 1 NA NA NA NA NA LTS-007 chr17 44408492 48156927 3748436 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, NA NA NA NA NA NA NA NA NA LTS-007 PHB, PNPO, UBE2Z, MRPL45P2, SP2, FLJ45513, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.42301393974353 125 0.0764000278669093 0.925804863805469 4404 0.273384831408965 1 1 0 -6.7407700652619 LTS-007 NA NA NA NA LTS-007 chr17 48156928 48157561 634 * ITGA3 NA 0 NA 1.066 1 NA NA NA NA NA LTS-007 chr17 48157562 73000584 24843023 * c(SNORA38B, CD300LD, TOM1L1, LINC00674, LINC00673, MIR3614, MIR3615, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR4524A, MIR3064, MIR5047, MIR4524B, TOB1, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, CD300C, CHAD, TLK2, POLG2, CD300A, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, USH1G, CD300LB, KIF19, C17orf64, WFIKKN2, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, CD300LF, C17orf77, TCAM1P, EFCAB3, LOC146880, NA NA NA NA NA NA NA NA NA LTS-007 EME1, CYB561, ANKFN1, MARCH10, TMEM92, ACE, DDX5, CEP112, SAMD14, SLC39A11, AMZ2P1, ERN1, BPTF, FDXR, PPM1E, ARSG, ABCA6, ABCA5, MMD, CDC42EP4, MTVR2, STXBP4, CACNA1G-AS1, NOL11, TANC2, NAT9, PITPNC1, OR4D1, GH1, GH2, CACNG5, CACNG4, LINC00469, FADS6, HID1, C17orf58, MILR1, C17orf47, GDPD1, GRIN2C, CDR2L, HLF, RAB37, ICAM2, METTL2A, C17orf67, CD300E, NACA2, OTOP3, SKA2, APOH, GPR142, ITGA3, HILS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, TOB1-AS1, KCNJ2-AS1, LINC00511, LOC400620, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, TACO1, MRPL27, AMZ2, PDK2, MRPS23, PTRH2, LUC7L3, PECAM1, SEPT4, SDK2, FAM20A, MBTD1, BCAS3, TMEM104, RNF43, MKS1, LINC00483, C17orf80, EPN3, WIPI1, SMG8, TMEM100, RSAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LRRC59, MSX2P1, PRKAR1A, PRR11, PRKCA, TEX2, GPRC5C, MAP2K6, TEX14, CA10, CCDC47, PSMC5, PSMD12, INTS2, PCTP, RAD51C, SCPEP1, RPL38, RPS6KB1, SCN4A, HEATR6, XYLT2, SRSF1, CPSF4L, SGCA, DNAI2, WFDC21P, SMURF2, SPATA20, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, SOX9, SSTR2, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, MIR454, TRIM25, VEZF1, CACNG1, DHX40, ACSF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, MYCBPAP, KIF2B, USP32, PPP1R9B, FAM104A, PPM1D, MGC16275, DGKE, ABCC3, RGS9, CACNA1G, SPAG9, CEP95, MTMR4, SLC16A6, ANKRD40, STRADA, PRR29, NOG, TSPOAP1, OTOP2, SLC9A3R1, COG1, TTYH2, TBX4, CD79B, MRC2, HELZ, MED13) 0.435181601765655 358 0.0717335647354627 0.962149468000951 16036 0.247695993740887 2 1 1 -6.88387932715429 LTS-007 NA NA NA NA LTS-007 chr17 73000585 73016489 15905 * c(CDR2L, MRPL58) 0.442 1 NA 0.99818916980768 41 0.199240276562943 2 2 0 -5.76445123632874 LTS-007 chr17 73016490 80363378 7346889 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, SLC25A10, NOTUM, NA NA NA NA NA NA NA NA NA LTS-007 TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, GCGR, UTS2R, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, SAP30BP, H3F3B, NT5C, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, MCRIP1, ZACN, ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.437099551502632 272 0.0476409324106845 0.94645276773519 11642 0.22670410466109 1 1 0 -6.91792857004491 LTS-007 NA NA NA NA LTS-007 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.951 1 NA NA NA NA NA LTS-007 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.472435065954663 3 0.0419563264995082 1.75960500727322 39 0.639449948133035 15 8 7 -7.46449122927835 LTS-007 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.793 1 NA NA NA NA NA LTS-007 chr17 80391535 81050815 659281 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.44852876870654 31 0.0427553932962144 0.939124279360143 883 0.209049728122345 2 1 1 -6.96137035168356 LTS-007 chr17 81050816 81083625 32810 * METRNL NA 0 NA 1.03767806932367 17 0.174877415048707 3 NA NA -5.76467922211758 LTS-007 chr18 116845 121139 4295 * ROCK1P1 0.492 1 NA 0.915190549988755 25 0.240971139350753 1 1 0 -5.76441092748605 LTS-007 chr18 121140 3457844 3336705 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.451279131040039 42 0.0460693122707627 0.909797142917995 1688 0.242055935801187 1 1 0 -6.97588621994633 LTS-007 chr18 3457845 14866503 11408659 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, NA NA NA NA NA NA NA NA NA LTS-007 PTPRM, PIEZO2, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, MPPE1, TGIF1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, L3MBTL4, VAPA, DLGAP1, PPP4R1) 0.433897296034081 102 0.080021192713218 0.997510484699741 4906 0.590064707984437 2 1 1 -6.74728605674375 LTS-007 NA NA NA NA LTS-007 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.11253635616748 33 0.291312979274765 4 NA NA -5.7647383712429 LTS-007 chr18 18529727 18529880 154 * ROCK1 0.216 1 NA 1.48331919759873 3 1.17692310708899 9 9 0 -5.76441014554982 LTS-007 chr18 18529881 43419008 24889128 * c(CDH2, ZSCAN30, GATA6-AS1, MIR302F, MIR320C1, MIR320C2, MIR4319, MIR4318, MIR4741, MIR3975, DSG2-AS1, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, ESCO1, OSBPL1A, INO80C, TTC39C, PSMA8, SLC25A52, DSG4, AQP4-AS1, ANKRD29, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, CABYR, GATA6, KCTD1, LINC00907, SIGLEC15, C18orf8, AQP4, CCDC178, LAMA3, MIR1-2, NA NA NA NA NA NA NA NA NA LTS-007 MIR133A1, MIR187, MEP1B, WBP11P1, NPC1, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, IMPACT, CELF4, MIB1, KIAA1328, KLHL14, RBBP8, HRH4, RIT2, ROCK1, KC6, CTAGE1, GAREM1, MIR924HG, SLC14A1, SNRPD1, SS18, SYT4, TAF4B, TTR, PCAT18, LOC729950, ZNF24, GREB1L, FHOD3, ASXL3, SLC14A2, CHST9, C18orf21, ZNF397, TMEM241, NOL4, RIOK3, CABLES1, B4GALT6) 0.44146888755697 123 0.0796079516314052 0.990576349135964 8112 0.265621904143149 2 1 1 -6.77158445664229 LTS-007 NA NA NA NA LTS-007 chr18 43419009 43420046 1038 * SIGLEC15 NA 0 NA 0.834 1 NA NA NA NA NA LTS-007 chr18 43420047 44057678 637632 * c(HAUS1, LOXHD1, C18orf25, SIGLEC15, RNF165, ATP5A1, EPG5, PSTPIP2) 0.439553362278083 9 0.0299976850958722 0.88963531037016 687 0.1746431802507 0 0 0 -6.95269059373853 LTS-007 chr18 44057679 63548926 19491248 * c(SNORD58C, LINC01630, MIR1539, MIR4320, CDH7, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4529, MIR3591, MIR4743, MIR4744, LINC-ROR, LINC01544, ACAA2, MALT1, POLI, ALPK2, LOXHD1, STARD6, CCBE1, C18orf54, TCEB3C, DCC, ZBTB7C, SKA1, CFAP53, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, SNORD58B, SNORD58A, CDH20, DYNAP, BOD1L2, HMSD, LOC284294, GRP, ST8SIA5, RAX, CXXC1, CPLX4, OACYLP, NA NA NA NA NA NA NA NA NA LTS-007 LMAN1, LINC01538, MIR122, SMAD2, SMAD4, SMAD7, MBD1, MC4R, ME2, MYO5B, NARS, C18orf32, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, DYM, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, RAB27B, BCL2, RPL17, SERPINB3, SERPINB4, SKOR2, SCARNA17, SNORA37, TCF4, CCDC68, KATNAL2, MRO, HDHD2, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PIAS2, SEC11C, TXNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LIPG, ONECUT2, VPS4B, CTIF) 0.438047820157091 180 0.0900591301722058 0.976027144852799 8119 0.424158040901489 2 1 1 -6.75558532475161 LTS-007 NA NA NA NA LTS-007 chr18 63548927 64169029 620103 * CDH19 0.475585364734583 2 0.029698484809835 1.20970139827889 90 0.296230750097573 5 3 2 -8.2079952350336 LTS-007 chr18 64169030 64169367 338 * CDH19 0 1 NA 1.71178010429974 9 1.67450276201624 12 12 0 -5.76441013838286 LTS-007 chr18 64169368 65180790 1011423 * c(MIR5011, CDH19, DSEL) 0.429177451472998 6 0.0452522559290326 1.12979477151977 268 0.304702442461591 4 2 2 -6.74447450282568 LTS-007 chr18 65180791 71796714 6615924 * c(LINC01541, LOC100505817, CD226, CBLN2, FBXO15, DOK6, RTTN, LOC400655, TMX3, LOC643542, CCDC102B, NETO1, DSEL, SOCS6) 0.302189839651744 9 0.191656449003013 1.00470271199528 903 0.323631868647882 2 2 0 -6.92709065118256 LTS-007 chr18 71796715 71990033 193319 * c(CYB5A, FBXO15, TIMM21, C18orf63) 0.48 1 NA 0.93140102525791 119 0.203828383272938 1 1 0 -5.76573479868233 LTS-007 chr18 71990034 77809809 5819776 * c(LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, CNDP1, CTDP1, ZNF516) 0.444296551735767 60 0.0713962840666871 0.978593013712401 2110 0.231727317247585 2 1 1 -6.78922265059736 LTS-007 chr18 77809810 78005362 195553 * c(PARD6G-AS1, RBFADN, ADNP2, RBFA, PARD6G) NA 0 NA 0.949886192751443 229 0.196891637359295 2 NA NA -5.76844505634871 LTS-007 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.465 1 NA 1.00514875893995 17 0.31543234801851 2 2 0 -5.76483406096554 LTS-007 chr19 282754 1650134 1367381 * c(MED16, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CIRBP-AS1, C19orf25, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, MEX3D, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, MADCAM1, NA NA NA NA NA NA NA NA NA LTS-007 KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.436872605437696 128 0.0814512302150392 0.923472145996552 3264 1.05764963013319 2 1 1 -6.7536152688946 LTS-007 NA NA NA NA LTS-007 chr19 1650135 1752648 102514 * TCF3 0.421 1 NA 0.877793540785182 13 0.187150631776542 1 1 0 -5.76687779688734 LTS-007 chr19 1752649 8808373 7055725 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4999, EBI3, PLIN3, CLEC4M, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, IZUMO4, SCAMP4, ADAT3, ZNF554, EVI5L, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, ZNF358, CSNK1G2, TICAM1, NA NA NA NA NA NA NA NA NA LTS-007 ZNRF4, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, FUT3, FUT5, FUT6, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, RPL36, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, MKNK2, UHRF1, GTF2F1, SLC39A3, CD209, ADGRE4P, CLEC4G, TMPRSS9, INSR, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, ANGPTL4, MARCH2, CD320, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, PLEKHJ1, FEM1A, STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SH3GL1, MBD3L4, MBD3L3, SNAPC2, STXBP2, TBXA2R, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, DPP9, RAB11B, CRB3, PEX11G, TRIP10, LONP1, APBA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SAFB2, CD70) 0.435278364524607 337 0.0706299457222341 0.932407803711726 11535 0.254583951916816 1 1 0 -6.79015448632649 LTS-007 NA NA NA NA LTS-007 chr19 8808374 9000185 191812 * c(ZNF558, ACTL9, OR2Z1, MBD3L1, MUC16) 0.291 1 NA 0.930782175624541 229 0.196864183783291 1 1 0 -5.7657344449332 LTS-007 chr19 9000186 9043497 43312 * MUC16 0.289662844895833 13 0.121098550669936 1.02195727616194 215 0.620424203829315 8 8 0 -6.74105698641312 LTS-007 chr19 9043498 9045821 2324 * MUC16 0.462 1 NA 1.09577009487021 9 1.5587085555392 4 4 0 -5.76441077523785 LTS-007 chr19 9045822 9056297 10476 * MUC16 0.463239875401598 2 0.00494974746830584 0.985566540839065 96 0.203429445666145 0 0 0 -14.6791710213854 LTS-007 chr19 9056298 9251304 195007 * c(OR7G1, OR1M1, OR7G2, OR7G3, ZNF317, MUC16) 0.460441527624218 50 0.0614781328305157 1.1032373115222 800 0.544594242852072 4 2 2 -6.94869427369642 LTS-007 chr19 9251305 9266566 15262 * ZNF317 NA 0 NA 0.869 1 NA NA NA NA NA LTS-007 chr19 9266567 9362343 95777 * c(OR7D4, OR7D2, OR7E24, ZNF317) 0.427220201442516 5 0.03481809874189 0.958306743114308 129 0.416965028980179 2 1 1 -6.74235331831247 LTS-007 chr19 9362344 9434872 72529 * c(OR7E24, ZNF699, ZNF559) 0.444 1 NA 0.968278105772765 55 0.152226678398241 2 2 0 -5.76497520086955 LTS-007 chr19 9434873 13210564 3775692 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, ZNF625-ZNF20, AP1M2, MIR4748, ZNF443, CDKN2D, CARM1, RNASEH2A, KLF1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, ZNF563, SPC24, ZNF846, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, DNASE2, DNM2, DNMT1, ELAVL3, ZNF627, DAND5, EPOR, FARSA, MAST1, C19orf38, SYCE2, KANK2, GCDH, NA NA NA NA NA NA NA NA NA LTS-007 TSPAN16, SNORD41, ZNF561-AS1, ZNF763, ZNF844, HOOK2, TNPO2, ICAM1, ICAM3, ICAM4, ILF3, JUNB, TMEM205, C3P1, ZNF788, LDLR, ZNF833P, LYL1, MIR199A1, MAN2B1, ASNA1, NFIX, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, WDR83OS, PDE4A, ZNF44, PIN1, S1PR5, ACP5, ZNF562, BEST2, FBXL12, C19orf66, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, ZNF490, DOCK6, RAD23A, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MIR638, PRDX2, ICAM5, ZNF812P, TYK2, ZNF878, ZNF20, ZNF69, ZNF121, ZNF136, ZNF177, YIPF2, C19orf43, ZNF426, ZNF442, CALR, QTRT1, RTBDN, ANGPTL6, FBXW9, WDR83, ELOF1, ZNF559, ATG4D, EIF3G, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.428796157056686 158 0.0734156397767624 0.927140221599161 7643 0.25944011390653 1 1 0 -6.74909880669614 LTS-007 NA NA NA NA LTS-007 chr19 13210565 13211420 856 * LYL1 NA 0 NA 1.014 1 NA NA NA NA NA LTS-007 chr19 13211421 19770774 6559354 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, FAM129C, NR2F6, ADGRL1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, TMEM59L, NA NA NA NA NA NA NA NA NA LTS-007 PGLS, LSM4, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, BORCS8-MEF2B, RAB8A, MYO9B, NDUFB7, NOTCH3, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 GATAD2A, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 CCDC130, ELL, PLVAP, USHBP1, TSSK6, C19orf44, MRI1, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, IL27RA, GDF15, TECR, IER2, ADGRE5) 0.430995983648337 262 0.0763949386890747 0.969869422101198 11079 0.230049072710567 2 1 1 -6.75798753305156 LTS-007 NA NA NA NA LTS-007 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.676 1 NA NA NA NA NA LTS-007 chr19 19772755 24345092 4572338 * c(HAVCR1P1, ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101, ZNF254) 0.420047873116142 66 0.0947611646281235 0.915175227532569 1590 0.295046899529441 1 1 0 -6.73370556264865 LTS-007 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.843239060033679 3 0.130481160836855 0 NA NA -5.76441018166897 LTS-007 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.465 1 NA 0.99219569056578 55 0.20167695607777 2 2 0 -5.76576738858208 LTS-007 chr19 30097269 35862499 5765231 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, NA NA NA NA NA NA NA NA NA LTS-007 PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.420629301583897 86 0.0789864808602506 0.998375541801719 3452 0.288437526967339 2 1 1 -6.74084622633662 LTS-007 NA NA NA NA LTS-007 chr19 35862500 35898772 36273 * LINC01531 0.364472111015277 2 0.142835569799683 0.555835403138508 40 0.378068247807192 4 4 0 -6.80939881436082 LTS-007 chr19 35898773 38709552 2810780 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, LOC100631378, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, ZNF573, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, NA NA NA NA NA NA NA NA NA LTS-007 ZNF568, KRTDAP, ZNF790, ZNF793, NPHS1, ATP4A, ZNF571, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, LOC644554, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.447306140548797 137 0.0588961751399377 0.995812268344219 4768 0.219319043560337 2 1 1 -6.83804389987983 LTS-007 NA NA NA NA LTS-007 chr19 38709553 38709625 73 * DPF1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-007 chr19 38709626 42882853 4173228 * c(LOC100129935, ERICH4, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, MIR4530, IFNL4, PAK4, CEACAM5, RABAC1, SPINT2, DLL3, CEACAM3, CEACAM7, CEACAM4, HNRNPUL1, MAP4K1, EGLN2, FBXO17, RASGRP4, ZNF526, CLC, EID2B, RINL, FBXO27, C19orf47, LYPD4, HIPK4, FAM98C, CAPN12, LGALS16, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, EID2, ZNF780B, ECH1, MEGF8, GGN, ERF, AKT2, FBL, SIRT2, NA NA NA NA NA NA NA NA NA LTS-007 CYP2G1P, CIC, PLD3, EIF3K, IFNL2, IFNL3, IFNL1, ZNF780A, C19orf54, PRR19, TMEM145, GRIK5, LGALS13, GSK3A, CYP2S1, SERTAD3, SERTAD1, HNRNPL, ZNF546, NCCRP1, SYCN, LEUTX, SELENOV, B3GNT8, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, MAP3K10, CEACAM6, ATP1A3, NFKBIB, PAFAH1B3, RAB4B, POU2F2, PAF1, SARS2, SAMD4B, ATP5SL, MED29, AXL, LGALS14, EXOSC5, PSMC4, PSMD8, LRFN1, PRX, SPTBN4, CATSPERG, BCKDHA, MRPS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RPS16, RPS19, RYR1, DMRTC2, C19orf33, TMEM91, CCER2, BLVRB, ZNF574, PLEKHG2, LGALS7B, SNRPA, SUPT5H, MIR641, TGFB1, ZFP36, COQ8B, CNTD2, ITPKC, B9D2, ACTN4, MIA, DPF1, LTBP4, FCGBP, CEACAM21, CCDC97, YIF1B, ARHGEF1, DYRK1B, NUMBL, TIMM50, SHKBP1, KCNK6, PPP1R14A, GMFG, CD79A) 0.426414506276739 208 0.0868639186928614 0.959350424412924 8283 0.266766414843558 2 1 1 -6.7588037077785 LTS-007 NA NA NA NA LTS-007 chr19 42882854 42893207 10354 * c(MEGF8, CNFN) 0 1 NA 0.99451263216812 17 0.640573645717833 2 2 0 -5.76441146833476 LTS-007 chr19 42893208 43269858 376651 * c(LIPE-AS1, CEACAM8, CXCL17, LIPE, PSG8, PSG1, PSG3, CEACAM1, CNFN) 0.416880750908999 11 0.074844323280211 0.992832574033816 294 0.300830394799828 2 1 1 -6.73710246474744 LTS-007 chr19 43269859 43343437 73579 * c(LOC100289650, PSG1, PSG3, PSG10P) NA 0 NA 0.522 1 NA NA NA NA NA LTS-007 chr19 43343438 43530661 187224 * c(PSG1, PSG3, PSG6, PSG7, PSG11, PSG10P) 0.0114402102945693 3 0.0456106712659804 0.559416465248598 88 0.804262215372748 20 20 0 -11.0408877460541 LTS-007 chr19 43530662 43568698 38037 * c(PSG2, PSG6) NA 0 NA 0.804 1 NA NA NA NA NA LTS-007 chr19 43568699 43967692 398994 * c(PRG1, LYPD3, LOC284344, PSG2, PSG4, PSG5, PSG6, PSG9, CD177, TEX101) 0.240508270091922 3 0.236863533143735 0.995445295997084 177 0.677252655854021 8 8 0 -6.82972850001602 LTS-007 chr19 43967693 44031324 63632 * c(ETHE1, LYPD3, ZNF575, PHLDB3) 0.463 1 NA 0.91778158402372 127 0.216856841634705 1 1 0 -5.76445053453108 LTS-007 chr19 44031325 50938385 6907061 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, EML2-AS1, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, ZNF234, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, PNKP, PTH2, NA NA NA NA NA NA NA NA NA LTS-007 SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, CADM4, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, PRKD2, ZNF473, IL4I1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, BBC3, DKKL1, C5AR2, DHDH, GPR4, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 IGFL3, PINLYP, LHB, LIG1, SIGLEC16, LOC400710, BCAM, MIR150, MIR330, IGFL4, MYBPC2, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, SMG9, IRGC, CABP5, PRRG2, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, NR1H2, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, NAPSA, CD37, DHX34) 0.443863546869131 295 0.0683322145732436 0.943029188913904 13101 0.22571989410653 1 1 0 -6.89095592081422 LTS-007 NA NA NA NA LTS-007 chr19 50938386 50939219 834 * MYBPC2 0 1 NA 0.875483125430358 9 1.51411713366055 1 1 0 -5.76441048572599 LTS-007 chr19 50939220 51297826 358607 * c(SNAR-F, FAM71E1, JOSD2, EMC10, GPR32, C19orf81, MYBPC2, SHANK1, ASPDH, CLEC11A, SYT3, ACPT, LRRC4B) 0.371153457022261 12 0.178788346172989 1.00779108778934 680 0.249381085292618 3 3 0 -6.74714590792252 LTS-007 chr19 51297827 51301395 3569 * c(C19orf48, ACPT) 0.471 1 NA 1.05122144575473 13 0.170494679968132 3 3 0 -5.76441425442782 LTS-007 chr19 51301396 54742738 3441343 * c(SIGLEC14, MIR935, LOC100129083, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, KLK11, LILRB3, KLK8, BIRC8, CLDND2, ZNF816, OSCAR, ZNF813, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, ETFB, FPR1, FPR2, FPR3, KLK5, KLK13, PRPF31, SIGLEC7, SIGLEC9, SIGLEC8, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, LOC284379, NA NA NA NA NA NA NA NA NA LTS-007 VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, KLK3, KLK1, KLK2, ZNF808, ZNF761, ZNF818P, LIM2, ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, TARM1, MIR372, MIR373, NDUFA3, NKG7, CNOT3, DPRX, PPP2R1A, ZNF331, KLK15, ZNF701, ZNF83, ZNF415, PRKCG, KLK7, KLK6, KLK10, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, KLKP1, RPS9, FAM90A27P, ZNF649, SNORD88A, SNORD88B, SNORD88C, MIR643, CEACAM18, LINC01530, ZNF28, ZNF137P, ZNF175, TSEN34, MBOAT7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ZNF765, NLRP12, MYADM, ZNF845, CD33, SIGLEC6, KLK4, ZNF432) 0.438212519385816 156 0.0834787105790083 0.955018948865348 5662 0.374961107328701 2 1 1 -6.7672590080237 LTS-007 NA NA NA NA LTS-007 chr19 54742739 54743758 1020 * c(LILRB3, LILRA6) 0.342 1 NA 1.19274498572512 13 0.558049407333832 5 5 0 -5.7644104077796 LTS-007 chr19 54743759 54780117 36359 * c(LILRB2, LILRB5, LILRB3, LILRA6) 0.287582802558506 10 0.18920371149754 0.995998392061224 133 0.608991136157899 8 8 0 -6.741168512535 LTS-007 chr19 54780118 54782407 2290 * c(LILRB2, LILRA6) 0.417 1 NA 1.08534013132208 21 0.374446569397202 3 3 0 -5.76441599574427 LTS-007 chr19 54782408 55248041 465634 * c(MIR4752, LILRB2, LILRB1, LILRB4, LILRA1, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.424124993141234 43 0.121532389987889 0.948212309821408 989 0.34088510103013 2 1 1 -6.73660967322401 LTS-007 chr19 55248042 55249998 1957 * KIR2DL3 NA 0 NA 0.507 1 NA NA NA NA NA LTS-007 chr19 55249999 55328078 78080 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.461580223081273 2 0.0106066017177983 0.761569045281694 107 0.235070717251161 0 0 0 -10.6041639589883 LTS-007 chr19 55328079 55328899 821 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.27 1 NA NA NA NA NA LTS-007 chr19 55328900 55351171 22272 * c(KIR2DS4, KIR3DL1) 0.428499966427932 4 0.0554338945652086 1.410646717384 57 0.645086474939892 9 5 4 -6.73899229771516 LTS-007 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.345 1 NA NA NA NA NA LTS-007 chr19 55358616 55501834 143219 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NLRP2, NCR1) 0.38049059097184 16 0.125897693253954 0.939531596621963 296 0.720969094088811 3 3 0 -6.73778222363044 LTS-007 chr19 55501835 55526373 24539 * c(GP6, NLRP2) 0.487 1 NA 0.891697259556605 57 0.193411672832769 1 1 0 -5.76459680067682 LTS-007 chr19 55526374 56249589 723216 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.432868639526967 56 0.0665356851816933 0.956886742584534 2133 0.251549804333986 2 1 1 -6.75220504275262 LTS-007 chr19 56249590 56284597 35008 * c(NLRP9, RFPL4A, RFPL4AL1) 0.403893077016332 2 0.0586898628384835 1.46012064132435 57 0.494454515141544 7 5 2 -6.73360394204535 LTS-007 chr19 56284598 56288851 4254 * character(0) NA 0 NA 0.985 1 NA NA NA NA NA LTS-007 chr19 56288852 59082605 2793754 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZSCAN22, NA NA NA NA NA NA NA NA NA LTS-007 ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.435736899978173 145 0.0733207656420028 0.978765535578414 4834 0.330594275305385 2 1 1 -6.7519253622369 LTS-007 NA NA NA NA LTS-007 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.908129021650876 9 0.0393418069968549 1 NA NA -5.76441682997415 LTS-007 chr20 68260 76962 8703 * DEFB125 0.47 1 NA 1.15277804079494 11 0.573044215333575 4 4 0 -5.76441489408826 LTS-007 chr20 76963 1459060 1382098 * c(SDCBP2-AS1, FKBP1A-SDCBP2, RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.438628747978517 62 0.0421687231996379 0.981224307144569 1836 0.234675802590464 2 1 1 -6.81524158185316 LTS-007 chr20 1459061 1539165 80105 * c(SIRPD, SIRPB2) 0.475 1 NA 1.0726773396379 67 0.335465274955606 3 3 0 -5.76447929640309 LTS-007 chr20 1539166 1559302 20137 * SIRPB1 NA 0 NA 0.984184620751242 36 0.319763378537894 2 NA NA -5.76441026570818 LTS-007 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.077 1 NA NA NA NA NA LTS-007 chr20 1569093 1592347 23255 * SIRPB1 NA 0 NA 0.140291777692223 39 0.175397262607187 0 NA NA -6.94571376615655 LTS-007 chr20 1592348 1600390 8043 * SIRPB1 NA 0 NA 1.044 1 NA NA NA NA NA LTS-007 chr20 1600391 1919324 318934 * c(LOC100289473, SIRPB1, SIRPA, SIRPG) 0.360613001850775 9 0.180524929026437 0.915946458417651 127 0.354624132661 3 3 0 -6.77915786176418 LTS-007 chr20 1919325 1960313 40989 * c(SIRPA, PDYN) 0.477 1 NA 1.02498856296619 47 0.32301006963852 3 3 0 -5.76466294563332 LTS-007 chr20 1960314 5937889 3977576 * c(SNORD119, UBOX5-AS1, TMEM239, MIR1292, MIR103B2, PCNA-AS1, LINC00658, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, STK35, ADRA1D, PRNT, LINC00654, C20orf196, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, SMOX, C20orf27, AVP, AP5S1, PRNP, GPCPD1, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, DDRGK1, NA NA NA NA NA NA NA NA NA LTS-007 SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.429286505578354 108 0.0936526630958768 0.980255113194553 4656 0.310983648503421 2 1 1 -6.73641744559331 LTS-007 NA NA NA NA LTS-007 chr20 5937890 5939228 1339 * MCM8 NA 0 NA 1.296 1 NA NA NA NA NA LTS-007 chr20 5939229 25281027 19341799 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, LRRN4, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, LOC339593, INSM1, NA NA NA NA NA NA NA NA NA LTS-007 LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, CRLS1, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, MCM8, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6) 0.437677370922077 157 0.0839829514013528 1.0378796208369 7170 0.357600386920417 3 2 1 -6.79026514970154 LTS-007 NA NA NA NA LTS-007 chr20 25281028 25426960 145933 * c(ABHD12, GINS1) 0 1 NA 0.996917730528185 115 0.360005379652999 2 2 0 -5.7645042276972 LTS-007 chr20 25426961 26188981 762021 * c(LOC100134868, NANP, NCOR1P1, NINL, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B, GINS1) 0.326720543626187 27 0.111388414646133 1.01169854106464 470 0.337352626539674 4 4 0 -6.85982002338273 LTS-007 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.1568638156022 3 0.184174735871491 4 NA NA -5.76441042655907 LTS-007 chr20 29625845 29625855 11 * FRG1BP 0.17 1 NA 1.942 1 NA NA NA NA NA LTS-007 chr20 29625856 29652105 26250 * c(MLLT10P1, FRG1BP) 0.328944979161602 21 0.111834912344257 1.28322432880574 43 0.60475654657073 6 6 0 -6.73336465681362 LTS-007 chr20 29652106 30226764 574659 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, LINC00028, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, HM13, COX4I2) 0.427 1 NA 0.98666527226383 291 0.262057806901599 2 2 0 -5.76442089816399 LTS-007 chr20 30226765 33867157 3640393 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, BPIFA2, NOL4L, CCM2L, SUN5, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, TRPC4AP, GGT7, C20orf203, GSS, HCK, BPIFA4P, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NA NA NA NA NA NA NA NA NA LTS-007 NECAB3, SNTA1, MIR644A, BPIFB2, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.432136671256478 115 0.0918674566738867 0.978046801080545 5182 0.265110782708592 2 1 1 -6.74070160181174 LTS-007 NA NA NA NA LTS-007 chr20 33867158 33867306 149 * EIF6 NA 0 NA 0.706 1 NA NA NA NA NA LTS-007 chr20 33867307 35929568 2062262 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, FAM83C, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, EIF6, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.432016556146092 43 0.0538473602508058 0.920239496744276 3323 0.200154614281893 1 1 0 -6.75930538473663 LTS-007 chr20 35929569 57600655 21671087 * c(ADA, ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, LOC100287792, MIR4325, MIR3194, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, MIR4756, MIR4532, MIR5095, ATP9A, LINC00489, TRERNA1, SGK2, WFDC2, CEBPB, ARFGEF2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, SLC32A1, WFDC3, GCNT7, CBLN4, NA NA NA NA NA NA NA NA NA LTS-007 CTCFL, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, WFDC13, APCDD1L, FAM209A, EYA2, ZHX3, SLC9A8, ADNP, ZMYND8, SPO11, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORD12C, SNORA71B, SNORA71A, TP53TG5, MOCS3, GNAS, WFDC10B, LINC00494, LINC01270, HNF4A, LOC339568, ARHGAP40, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SPINT4, SUMO1P1, LBP, MIR296, MC3R, MMP9, ZFAS1, MYBL2, NFATC2, NNAT, SLC35C2, PCK1, IFT52, NELFCD, RTFDC1, OSER1, PIGT, PFDN4, PI3, PLCG1, PLTP, CTSA, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, CTNNBL1, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, PREX1, PTPN1, NCOA5, RPRD1B, KCNK15, DHX35, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, SNORD12, MIR645, TFAP2C, TGM2, TNNC2, TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, ZNF217, GDAP1L1, LINC01260, TTPAL, NPEPL1, ACTR5, PABPC1L, TUBB1, ZBP1, SLC2A10, FAM83D, NCOA3, CHD6, PARD6B, RAE1, TOX2, BCAS1, KIAA1755, STX16, MATN4, DPM1, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 VAPB, B4GALT5, CD40, TTI1, SPATA2, MAFB) 0.441041808391229 330 0.0663163605438749 0.961051092646713 15671 0.233792724502874 2 1 1 -6.92071780362145 LTS-007 NA NA NA NA LTS-007 chr20 57600656 57769044 168389 * c(SLMO2-ATP5E, ZNF831, PRELID3B, ATP5E, TUBB1) 0 1 NA 0.957615527736426 197 0.765791894770057 2 2 0 -5.76454928619041 LTS-007 chr20 57769045 58647793 878749 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3, C20orf197, PPP1R3D, CDH26, FAM217B) 0.247123747241245 9 0.243181402340813 0.995013557153976 863 0.507007126953202 5 5 0 -6.90526986336312 LTS-007 chr20 58647794 58883516 235723 * c(C20orf197, MIR646HG) 0.414 1 NA 1.25700262522383 7 0.305425074593551 6 6 0 -5.7649428604036 LTS-007 chr20 58883517 62905721 4022205 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, MIR4533, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, NA NA NA NA NA NA NA NA NA LTS-007 MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PCMTD2, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.441073366397693 156 0.0633006647057667 0.981538963939801 5628 0.240915739973803 2 1 1 -6.78247108302155 LTS-007 NA NA NA NA LTS-007 chr20 62905722 62959313 53592 * c(LINC00266-1, PCMTD2) NA 0 NA 1.08398823079882 51 0.556217352776243 3 NA NA -5.76446614744606 LTS-007 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.295 1 NA 0.559110356606193 23 0.787405500949099 0 0 0 -5.7772457486345 LTS-007 chr21 9907203 11098723 1191521 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.349460018472418 37 0.0889706737120765 1.07861586009245 161 0.836852078610763 5 5 0 -6.74703912172514 LTS-007 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 0.907824685111242 3 0.0912213425319608 1 NA NA -5.76441018177079 LTS-007 chr21 14745307 14756794 11488 * character(0) 0.444 1 NA 0.937837673588709 9 0.41660716241776 1 1 0 -5.76444277919059 LTS-007 chr21 14756795 15918700 1161906 * c(MIR3156-3, LIPI, ABCC13, POTED, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.424116088394456 18 0.115608775137915 0.905482872979101 351 0.50942296681724 1 1 0 -6.73347895071568 LTS-007 chr21 15918701 15954407 35707 * SAMSN1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-007 chr21 15954408 26958033 11003626 * c(LINC01549, RNU6-67P, SAMSN1-AS1, BTG3, MIR155HG, CHODL, CXADR, C21orf91-OT1, D21S2088E, LINC00515, USP25, LOC339622, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, LINC00158, CHODL-AS1, LINC00308, MRPL39, C21orf91, TMPRSS15, SAMSN1, NRIP1) 0.406398867005838 26 0.128987059577547 1.04408035166773 1202 0.327080659320025 3 2 1 -6.75463473438377 LTS-007 chr21 26958034 48084989 21126956 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, ITGB2-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, HSF2BP, ADAMTS5, LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, NA NA NA NA NA NA NA NA NA LTS-007 CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, LINC00307, KRTAP13-4, LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, KRTAP26-1, LINC00114, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, MRPL39, DNAJC28, C21orf62, MRAP, C21orf59, AGPAT3, MAP3K7CL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, LOC642852, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.437877645212658 456 0.0697479959433568 0.963278666198789 17764 0.533356546253784 2 1 1 -6.78296095515281 LTS-007 NA NA NA NA LTS-007 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 1.287 1 NA NA NA NA NA LTS-007 chr22 16157787 16157883 97 * character(0) 0.367 1 NA 1.034 1 NA NA NA NA NA LTS-007 chr22 16157884 22569534 6411651 * c(MIR301B, CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, COMT, CRKL, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, YDJC, CCDC116, HIC2, TSSK2, SDF2L1, PPIL2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, POM121L8P, NA NA NA NA NA NA NA NA NA LTS-007 YPEL1, ZDHHC8, SERPIND1, PI4KAP2, TPTEP1, CCDC188, LRRC74B, BCRP2, MIR130B, MIR185, ARVCF, THAP7-AS1, P2RX6P, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BID, TMEM191C, MRPL40, RTN4R, SLC7A4, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, ZNF74, C22orf29, THAP7, OR11H1, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 DGCR6L, RIMBP3, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, DGCR2) 0.43299589482981 200 0.0834438322508232 0.962251303753553 6960 0.246612736922803 2 1 1 -6.77673596521418 LTS-007 NA NA NA NA LTS-007 chr22 22569535 22578444 8910 * character(0) NA 0 NA 0.523301996280748 39 0.285787448267142 0 NA NA -5.77884436561063 LTS-007 chr22 22578445 22578447 3 * character(0) NA 0 NA 0.891 1 NA NA NA NA NA LTS-007 chr22 22578448 24342396 1763949 * c(DDTL, IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, C22orf15, DDT, PRAME, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, VPREB1, ZNF70, GGTLC2, GUSBP11, DERL3, RAB36, BMS1P20) 0.427122159146992 69 0.0631234260985662 0.946931813224103 1881 0.457103774462777 2 1 1 -6.74361582247462 LTS-007 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.127 1 NA NA NA NA NA LTS-007 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0599810925117099 55 0.0283591088935999 0 NA NA -18.4195375849806 LTS-007 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.74 1 NA NA NA NA NA LTS-007 chr22 24400149 37268501 12868353 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, CACNG2, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, IFT27, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, NA NA NA NA NA NA NA NA NA LTS-007 SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, PISD, OSBP2, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, TXN2, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MB, MCM5, MN1, PIWIL3, MIAT, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 EIF4ENIF1, ASPHD2, PVALB, RFPL1, BCRP3, ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TIMP3, TOP1P2, SEC14L6, XBP1, YWHAH, FOXRED2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.442832925728619 255 0.0668150734293017 0.933735795944192 11611 0.224015459280528 1 1 0 -6.88371742234856 LTS-007 NA NA NA NA LTS-007 chr22 37268502 37271882 3381 * NCF4 0.456 1 NA 1.2146600185423 5 0.414072215923744 5 5 0 -5.76441062094765 LTS-007 chr22 37271883 37335834 63952 * c(CSF2RB, NCF4) 0.264741763730112 9 0.237923015093351 0.964636323493805 146 0.675585534661129 9 9 0 -6.75155782018644 LTS-007 chr22 37335835 37462926 127092 * c(LL22NC01-81G9.3, CSF2RB, TMPRSS6, TEX33, MPST, TST, KCTD17) 0.473 1 NA 0.946768056480033 203 0.182897588085928 1 1 0 -5.76772584585383 LTS-007 chr22 37462927 42896795 5433869 * c(LOC100130899, NDUFA6-AS1, MIR1281, LOC100506472, MIR4534, MIR4766, APOBEC3A_B, DNAL4, TAB1, SLC25A17, DDX17, TOB2, KDELR3, TRIOBP, CDC42EP1, DMC1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, APOBEC3D, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, APOBEC3A, APOBEC3F, EP300, TNRC6B, ZC3H7B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, XRCC6, NA NA NA NA NA NA NA NA NA LTS-007 CBY1, SUN2, TMEM184B, GGA1, SNORD43, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, CARD10, H1F0, LINC00634, IL2RB, KCNJ4, OGFRP1, LGALS1, LGALS2, LOC400927, MIR33A, MFNG, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, EIF3L, PDGFB, PMM1, POLR2F, MIEF1, SEPT3, TOMM22, PDXP, MKL1, RAC2, RANGAP1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SOX10, SREBF2, SSTR3, ST13, TCF20, TEF, MIR658, MIR659, CENPM, NOL12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 C22orf46, CCDC134, BAIAP2L2, L3MBTL2, PLA2G6, C22orf23, GALR3, PHF5A, MICALL1, CACNA1I, SYNGR1, RPS19BP1, SMDT1, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.447225841167843 241 0.0534228496474464 0.926664383426118 9757 0.244061505693146 1 1 0 -6.88555837929353 LTS-007 NA NA NA NA LTS-007 chr22 42896796 42898652 1857 * SERHL NA 0 NA 1.159 1 NA NA NA NA NA LTS-007 chr22 42898653 42950113 51461 * c(SERHL2, RRP7A, SERHL) 0.347974988667002 4 0.0263185612575358 1.29419844104537 99 0.294839543167489 5 5 0 -6.73976282613054 LTS-007 chr22 42950114 42951965 1852 * c(SERHL2, RRP7BP) NA 0 NA 0.855 1 NA NA NA NA NA LTS-007 chr22 42951966 51215123 8263158 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, MCAT, LOC284933, NA NA NA NA NA NA NA NA NA LTS-007 RPL23AP82, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.4375003434921 289 0.075268146658358 0.927544167918649 8072 0.233068876502065 1 1 0 -6.7887037797271 LTS-007 NA NA NA NA LTS-007 chr22 51215124 51220846 5723 * c(RABL2B, RPL23AP82) NA 0 NA 0.884777434338764 17 0.143924868063371 1 NA NA -5.76455504191612 LTS-007 chrX 2699993 2700027 35 * XG 0.5 1 NA 1.571 1 NA NA NA NA NA LTS-007 chrX 2700028 12725701 10025674 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.441086099823927 55 0.0768361105131427 1.01236780995525 2830 0.247688797771244 2 1 1 -6.83790117293606 LTS-007 chrX 12725702 12725716 15 * FRMPD4 NA 0 NA 0.877 1 NA NA NA NA NA LTS-007 chrX 12725717 13734125 1008409 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, ATXN3L, RAB9A, FRMPD4) 0.423712130752766 24 0.0984395643330818 0.905671970496406 803 0.284460816725187 1 1 0 -6.73365867838074 LTS-007 chrX 13734126 13734586 461 * TRAPPC2 NA 0 NA 0.951 1 NA NA NA NA NA LTS-007 chrX 13734587 50653775 36919189 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, SUPT20HL1, PHKA2-AS1, GAGE12D, LOC100132831, UXT-AS1, SCARNA9L, MIR500B, MIR23C, PIR-FIGF, MIR4769, MIR4768, PQBP1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SSX3, TIMM17B, SCML2, PRDX4, EBP, RAI2, PIM2, IL1RAPL1, WDR45, PRAF2, CA5B, CLCN5, BEND2, DGKK, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, USP27X-AS1, FAM47A, MOSPD2, NA NA NA NA NA NA NA NA NA LTS-007 MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, ELK1, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, FTSJ1, CXorf58, GAGE1, CXorf23, MAP7D2, KLHL34, TAB3, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GK, GPR82, GPKOW, PCSK1N, GLRA2, SSX6, SSX9, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, CCDC22, GRPR, SH3KBP1, ERAS, CA5BP1, ZNF81, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, MAP3K15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 SPACA5, USP27X, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, YY2, MIR188, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, TBC1D25, OTC, FOXP3, CDK16, MBTPS2, PDHA1, PDK3, CFP, PHEX, PHKA2, PIGA, PLP2, FTHL17, POLA1, NDUFB11, PPEF1, BCOR, GEMIN8, OTUD5, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, GRIPAP1, ZNF630, TMEM27, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MID1IP1, ACE2, RBBP7, RBM3, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TRAPPC2, ZNF674, NA, GAGE2B, GAGE13, NA, MAGEB17, WDR13, PORCN, BMX, SMS, SSX1, SSX5, SCARNA23, CDKL5, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, TSPAN7, MIR660, LINC01545, GAGE12J, GAGE2D, GAGE2A, LOC729609, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, ZNF41, ZNF157, CACNA1F, APOO, S100G, CXorf36, MAGIX, CXorf21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 EFHC2, KLHL15, PPP1R2P9, ZRSR2, USP11, USP9X, RBM10, TMEM47, SRPX, UXT, SLC9A7, OFD1, CCNB3, PIR, INE2, INE1, CASK, PAGE1, AKAP4, AP1S2, PPP1R3F, CCDC120, RGN, REPS2, BMP15, SLC38A5, MED14, SYAP1, SYTL5, PCYT1B, PAGE4, JADE3) 0.434770313363868 175 0.0820731513193425 1.01728822265669 17657 0.249958891868373 2 1 1 -7.08877547477522 LTS-007 NA NA NA NA LTS-007 chrX 50653776 51075841 422066 * c(NUDT10, BMP15) 0.216 1 NA 0.949836551479957 32 0.13609342142381 2 2 0 -5.78264681626983 LTS-007 chrX 51075842 57618870 6543029 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, XAGE3, XAGE5, NUDT10, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, SPANXN5, PFKFB1, GPR173, SPIN2A, GNL3L, FAM120C, LINC01420, NUDT11, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, NA NA NA NA NA NA NA NA NA LTS-007 FAM104B, PAGE5, MAGED1) 0.344637125184156 31 0.121125155214788 1.01094275858314 3875 0.240933621945456 2 2 0 -6.94056322282104 LTS-007 NA NA NA NA LTS-007 chrX 57618871 57937169 318299 * c(ZXDB, ZXDA) NA 0 NA 0.991466814181522 197 0.25737510601918 2 NA NA -5.76452524501527 LTS-007 chrX 61999880 63408093 1408214 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 1.07046901545095 301 0.331365532960368 3 3 0 -5.76528521900091 LTS-007 chrX 63408094 63445542 37449 * c(AMER1, ASB12, MTMR8) NA 0 NA 1.10061643865239 126 0.20092191454899 4 NA NA -5.76487827327662 LTS-007 chrX 63445543 79281257 15835715 * c(MIR374B, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, VSIG4, COX7B, MAP2K4P1, OTUD6A, UPRT, MAGEE2, ASB12, CXorf65, AWAT1, AWAT2, ZDHHC15, DLG3, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, P2RY10, CXCR3, LPAR4, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, NA NA NA NA NA NA NA NA NA LTS-007 MIR374A, CITED1, MSN, NAP1L2, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, ATRX, ERCC6L, GDPD2, JPX, MTMR8, HDAC8, ZC4H2, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, LAS1L, FRMD8P1, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, STARD8, HEPH, MED12) 0.436145597511859 61 0.0902233264398946 0.987392182248424 8060 0.221278791409418 2 1 1 -6.74680320512691 LTS-007 NA NA NA NA LTS-007 chrX 79281258 79282242 985 * TBX22 NA 0 NA 1.077 1 NA NA NA NA NA LTS-007 chrX 79282243 106396455 27114213 * c(ARMCX4, UBE2DNL, LINC00630, ARMCX5-GPRASP2, RPL36A-HNRNPH2, TMSB15A, CHM, GPRASP2, DACH2, MUM1L1, FAM199X, APOOL, HDX, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, TCEAL6, H2BFWT, TIMM8A, FAM46D, DIAPH2, DRP2, NRK, TMEM31, CENPI, BRWD3, IL1RAPL2, BEX3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, RAB40AL, H2BFM, LOC286437, FAM133A, TMSB15B, RPA4, HNRNPH2, BEX5, TCEAL5, MORF4L2-AS1, SATL1, ARL13A, SLC25A53, XKRX, GLRA4, NA NA NA NA NA NA NA NA NA LTS-007 XRCC6P5, NAP1L3, TBX22, TCEAL9, RAB9B, ARMCX1, ARMCX3, CPXCR1, PLP1, TAF7L, ARMCX6, POU3F4, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXF5, NXF4, NXF3, KLHL4, TEX13A, BEX4, TCEAL7, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, ZCCHC18, SH3BGRL, ARMCX5, SERPINA7, BTK, TSPAN6, ZNF711, HMGN5, RNF128, MORC4, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, ZMAT1, BEX2, TCEAL3, TGIF2LX, CLDN2, TCEAL8, RIPPLY1, TCEAL1, SYTL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-007 MORF4L2, GPRASP1, ARMCX2) 0.446436821990295 78 0.0781593571806032 1.03390980101053 7466 0.610314696843898 3 2 1 -6.81528658850028 LTS-007 NA NA NA NA LTS-007 chrX 106396456 106397326 871 * NUP62CL 0 1 NA 1.28909032315227 9 2.4799811379211 6 6 0 -5.76441013819464 LTS-007 chrX 106397327 117054395 10657069 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, MIR3978, MID2, SLC6A14, ATG4A, COL4A5, COL4A6, PIH1D3, RBMXL3, AMOT, DCX, TSC22D3, AGTR2, CT83, ACSL4, KCNE5, GUCY2F, HTR2C, VSIG1, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, NUP62CL, MIR448, NXT2, TEX13B, PRPS1, PSMD10, RGAG1, LRCH2, SNORA35, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, TMEM164, IRS4, KLHL13, CHRDL1, AMMECR1 NA NA NA NA NA NA NA NA NA LTS-007 ) 0.386309992112046 31 0.155946951278001 1.02128635466775 4118 0.234208993707628 3 3 0 -6.88349487538906 LTS-007 NA NA NA NA LTS-007 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.954 1 NA NA NA NA NA LTS-007 chrX 117079357 118722263 1642907 * c(MIR1277, SLC25A5-AS1, PGRMC1, DOCK11, ZCCHC12, SLC25A43, SLC25A5, IL13RA1, WDR44, KIAA1210, CXorf56, UBE2A, LONRF3, KLHL13) 0.407771909369848 24 0.17969900357002 0.98337239350664 1263 0.282693897130536 2 2 0 -6.73308682702073 LTS-007 chrX 118722264 118829467 107204 * c(SEPT6, NKRF, MIR766) 0.441 1 NA 0.944923369590294 233 0.149371659517005 1 1 0 -5.76818528848418 LTS-007 chrX 118829468 123046923 4217456 * c(ZBTB33, AKAP14, RHOXF1, NKAPP1, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, XIAP, SOWAHD, LAMP2, NDUFA1, TMEM255A, THOC2, RPL39, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, RNF113A, NKAP, CUL4B) 0.459547908168359 27 0.0278167077629476 0.973658962179438 1517 0.234930080657275 2 1 1 -7.63186438335078 LTS-007 chrX 123046924 123047668 745 * XIAP 0.086 1 NA 1.06223714724297 15 0.391283090795983 3 3 0 -5.76441015994196 LTS-007 chrX 123047669 131216431 8168763 * c(TEX13C, PRR32, TENM1, ENOX2, STAG2, UTP14A, DCAF12L1, ACTRT1, GPR119, ARHGAP36, ELF4, FIRRE, XIAP, DCAF12L2, OR13H1, IGSF1, SH2D1A, OCRL, ZDHHC9, RBMX2, STK26, SASH3, ZNF280C, BCORL1, SMARCA1, XPNPEP2, APLN, SLC25A14, FRMD7, AIFM1, RAB33A) 0.358825462943447 26 0.196311687022292 0.994249276632065 2780 0.392252525281077 2 2 0 -6.77404533878202 LTS-007 chrX 131216432 131760779 544348 * c(MBNL3, RAP2C, HS6ST2, FRMD7) 0.467 1 NA 0.976948260074919 313 0.236956121314392 2 2 0 -5.76482377489155 LTS-007 chrX 131760780 136113450 4352671 * c(MIR450B, MIR934, LINC00892, LINC00633, LINC00629, HS6ST2-AS1, SLC9A6, PLAC1, ADGRG4, FAM122B, FAM122C, INTS6L, ZNF449, GPC4, FHL1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, HPRT1, CCDC160, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, TFDP3, VGLL1, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, SMIM10, SMIM10L2B, MIR542, BRS3, CT45A2, ZNF75D, NA NA NA NA NA NA NA NA NA LTS-007 MAP7D3, GPR101, USP26, PHF6, MIR503HG, FAM127A, HS6ST2, MMGT1, ARHGEF6, CD40LG) 0.437321578673906 28 0.051297593722251 0.983496241708231 2644 0.563332667808607 2 1 1 -6.77987312315046 LTS-007 NA NA NA NA LTS-007 chrX 136113451 136113549 99 * GPR101 NA 0 NA 1.044 1 NA NA NA NA NA LTS-007 chrX 136113550 152139142 16025593 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, FGF13-AS1, CSAG4, LINC00893, CXorf51B, LINC00894, MIR320D2, MIR2114, MIR514B, MIR4330, MAMLD1, MAGEA10-MAGEA5, MAGEA8-AS1, CDR1, CETN2, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, CSAG1, FMR1NB, LINC00889, NA, NA, VMA21, F9, FGF13, FMR1, AFF2, LDOC1, GABRA3, GABRE, ATP11C, LINC00632, HMGB3, IDS, CXorf66, LOC389895, UBE2NL, MIR105-1, MIR105-2, NA NA NA NA NA NA NA NA NA LTS-007 MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MCF2, SPANXN4, MTM1, SPANXN1, SPANXN2, NSDHL, MAGEC2, CXorf40B, GABRQ, MIR452, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, ZIC3, MIR767, ZNF185, PRRG3, GPR101, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, TMEM257, CXorf40A, GPR50, MAGEC1) 0.443870141144794 77 0.0646690956669521 1.03662036724288 4442 0.297057997235504 3 2 1 -6.84929679870258 LTS-007 NA NA NA NA LTS-007 chrX 152139143 152157312 18170 * ZNF185 NA 0 NA 0.824 1 NA NA NA NA NA LTS-007 chrX 152157313 154528281 2370969 * c(SMIM9, CMC4, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, F8, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, MTCP1, ATP2B3, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, NA NA NA NA NA NA NA NA NA LTS-007 SNORA56, TAZ, VBP1, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.455632289744222 66 0.0325180710025201 0.972775404395547 4983 0.212222068339717 2 1 1 -7.29058350495104 LTS-007 NA NA NA NA LTS-007 chrX 154528282 154528380 99 * CLIC2 NA 0 NA 0.797 1 NA NA NA NA NA LTS-007 chrX 154528381 154577906 49526 * CLIC2 0 1 NA 0.996886341170305 11 0.764960450552243 2 2 0 -5.76441716954099 LTS-007 chrX 154577907 154580169 2263 * character(0) NA 0 NA 0.39846532185295 28 0.0808404267874348 0 NA NA -5.8768400858852 LTS-007 chrX 154580170 154774986 194817 * TMLHE NA 0 NA 1.39747464159078 39 3.46604670517913 8 NA NA -5.7644148474006 LTS-007 chrY 4924430 5491186 566757 * PCDH11Y 0.4 1 NA 0.347844915881048 2 0.400222438151586 0 0 0 -7.07192101825547 LTS-007 chrY 5491187 5608782 117596 * PCDH11Y NA 0 NA 0.0476278624244063 24 0.0291038868861886 0 NA NA -22.0684381632198 LTS-007 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.77077264817356 19 0.313396428884292 0 NA NA -6.0772989766131 LTS-007 chr1 65893 721757 655865 * c(LOC100288069, LOC729737, OR4F5) 0.242 1 NA 1.55386486471695 12 0.486993341999164 5 5 0 -5.76444034709452 LTS-008 chr1 721758 1533977 812220 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.405869588032858 37 0.111863387296369 1.08855571453083 2636 0.245924306993801 3 2 1 -6.78819417222682 LTS-008 chr1 1533978 1603048 69071 * c(MIB2, FNDC10, SLC35E2B, MMP23B, CDK11B) 0.393379344836337 14 0.0608908228528101 1.21555263350028 364 0.35684467599546 5 3 2 -6.77725907391783 LTS-008 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.647 1 NA NA NA NA NA LTS-008 chr1 1606859 1636501 29643 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.381 1 NA 0.711842397475124 82 0.426193561803618 2 2 0 -5.76563738656774 LTS-008 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.04 1 NA NA NA NA NA LTS-008 chr1 1637054 1646772 9719 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.490830613214623 55 0.426928222387215 1 NA NA -5.76471774043677 LTS-008 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.994 1 NA NA NA NA NA LTS-008 chr1 1647807 1671167 23361 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.424511258047702 14 0.056943581100695 0.851824106612379 127 0.228805086600021 2 1 1 -6.73425239541901 LTS-008 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 1.461 1 NA NA NA NA NA LTS-008 chr1 1682940 7798549 6115610 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-008 MIR551A, TP73, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21) 0.39589719578962 191 0.0816722330485923 1.13319760024292 5388 0.413535720228859 3 2 1 -6.89129422615594 LTS-008 NA NA NA NA LTS-008 chr1 7798550 7804839 6290 * CAMTA1 NA 0 NA 1.076 1 NA NA NA NA NA LTS-008 chr1 7804840 16786548 8981709 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, C1orf64, SLC2A7, DFFA, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, SZRD1, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, NA NA NA NA NA NA NA NA NA LTS-008 TNFRSF9, DRAXIN, SPATA21, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, FBLIM1, CASZ1, TMEM51, VPS13D, NECAP2, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.376166251640722 278 0.0872565864539394 1.08194946200165 10215 1.12803564046638 3 2 1 -6.73670480961969 LTS-008 NA NA NA NA LTS-008 chr1 16786549 16802421 15873 * c(CROCCP3, NECAP2) NA 0 NA 0.844 1 NA NA NA NA NA LTS-008 chr1 16802422 17010006 207585 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.329434569834556 19 0.127009646454109 0.779433980870478 158 0.343328593947188 3 2 1 -6.90235395217445 LTS-008 chr1 17010007 17010048 42 * character(0) NA 0 NA 1.183 1 NA NA NA NA NA LTS-008 chr1 17010049 17248500 238452 * c(MST1L, ESPNP, CROCC) 0.327493528820699 39 0.114480685097788 1.13304381988884 280 0.365032751864043 4 3 1 -6.77825131715938 LTS-008 chr1 17248501 17248531 31 * CROCC NA 0 NA 1.547 1 NA NA NA NA NA LTS-008 chr1 17248532 17274945 26414 * CROCC 0.364973856661441 6 0.0683503230911651 1.63382016854394 76 0.481890869752558 6 4 2 -6.74056696420539 LTS-008 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.353 1 NA NA NA NA NA LTS-008 chr1 17275408 19440579 2165172 * c(MIR4695, PADI2, IFFO2, KLHDC7A, UBR4, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.396344564853168 41 0.0782723512845357 1.16093983360765 2046 0.394996803859188 3 2 1 -6.85851488440897 LTS-008 chr1 19440580 19441320 741 * UBR4 NA 0 NA 0.928 1 NA NA NA NA NA LTS-008 chr1 19441321 21625613 2184293 * c(LOC100506730, LOC100506801, MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, EIF4G3, CDA) 0.361345445966174 66 0.100301620881794 1.0890575070417 3013 0.239893186260829 3 2 1 -6.77294237561506 LTS-008 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.464 1 NA NA NA NA NA LTS-008 chr1 21749805 21755143 5339 * character(0) 0.416954937186942 7 0.0737670077241271 0.714316759899975 48 0.44473450522963 2 1 1 -6.73938590311502 LTS-008 chr1 21755144 21755236 93 * character(0) NA 0 NA 1.231 1 NA NA NA NA NA LTS-008 chr1 21755237 24972559 3217323 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, NCMAP, LDLRAD2, WNT4, ASAP3, PNRC2, PITHD1, NIPAL3, GRHL3, IL22RA1, RAP1GAP, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, USP48, NBPF3, STPG1, NA NA NA NA NA NA NA NA NA LTS-008 ZBTB40, CDC42) 0.380879525347441 87 0.0864984621915767 1.10818602551067 4589 0.36229326587467 3 2 1 -6.77682928099545 LTS-008 NA NA NA NA LTS-008 chr1 24972560 24973242 683 * SRRM1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-008 chr1 24973243 25599056 625814 * c(SRRM1, CLIC4, SYF2, RSRP1, RHD, RUNX3) 0.363 1 NA 1.00829338502193 446 0.258704024510792 3 3 0 -5.77402941673972 LTS-008 chr1 25599057 25599066 10 * c(RSRP1, RHD) NA 0 NA 0.59 1 NA NA NA NA NA LTS-008 chr1 25599067 25656954 57888 * c(RSRP1, RHD) NA 0 NA 0.0753994738754241 79 0.0765991517914976 0 NA NA -10.2890035003024 LTS-008 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.904 1 NA NA NA NA NA LTS-008 chr1 25666924 43885939 18219016 * c(FAM229A, MATN1-AS1, LOC100129924, NFYC-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, CNKSR1, ZMPSTE24, CD52, PPIE, PPIH, CAP1, KHDRBS1, GMEB1, NUDC, SF3A3, EBNA1BP2, RCC1, MED8, SMIM12, AZIN2, TMEM54, ERMAP, CSMD2, RAB42, FAM46B, KDF1, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, TMEM125, COL8A2, NA NA NA NA NA NA NA NA NA LTS-008 COL9A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, PAQR7, EDN2, PHC2, AGO3, AGO4, FAM76A, TXLNA, SLFNL1, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, FOXJ3, SCMH1, WDTC1, NCDN, SZT2, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LINC01226, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, SVBP, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MIR30C1, MIR30E, MATN1, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, OPRD1, PAFAH2, ZNF593, ZNF691, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, TRIT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TMEM57, TRIM62, PEF1, PPT1, PIGV, MAP7D1, IQCC, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, HIVEP3, RBBP4, RHCE, RLF, RPA2, RPS6KA1, GPATCH3, CLSPN, OXCT2, RRAGC, TINAGL1, P3H1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, SMAP2, S100PBP, MEAF6, EXO5, CEP85, ELOVL1, MRPS15, MARCKSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SLC2A1, ZFP69B, ZBTB8A, LOC653160, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, TIE1, ZBTB8B, LINC01137, PPIEL, CCDC30, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, C1orf50, CCDC28B, NKAIN1, AKIRIN1, YRDC, PPCS, LIN28A, SH3D21, SNIP1, ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZMYND12, ZDHHC18, NR0B2, NT5C1A, TRIM63, FAM167B, MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, KCNQ4, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, RIMS3, CDC20, THRAP3) 0.395080631716742 358 0.0715047124341212 1.07590949796037 21391 0.256136178249465 3 2 1 -6.87016503129378 LTS-008 NA NA NA NA LTS-008 chr1 43885940 43886038 99 * SZT2 NA 0 NA 1.14 1 NA NA NA NA NA LTS-008 chr1 43886039 44088648 202610 * c(SZT2, PTPRF, HYI) 0.408588657956487 15 0.032012943810724 1.23357190082438 609 0.240728256544248 5 3 2 -6.85209055780229 LTS-008 chr1 44088649 74492267 30403619 * c(EFCAB14-AS1, LINC01135, ZRANB2-AS1, KDM4A-AS1, INSL5, GNG12-AS1, MIR1262, MIR761, MIR3117, MIR3671, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR5584, NEGR1-IT1, ZRANB2-AS2, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, HHLA3, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, LRRIQ3, DMBX1, TCEANC2, PODN, C1orf87, KLF17, NA NA NA NA NA NA NA NA NA LTS-008 CPT2, UBE2U, KNCN, MOB3C, GLIS1, CTH, IL23R, CCDC24, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, DPH2, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, TCTEX1D1, AK4, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, SLC35D1, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, NEGR1, PARS2, MMACHC, ACOT11, CYP4X1, SERBP1, BEST4, SNORD55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, FAM151A, C1orf228, TCTEX1D4, FAM159A, IL12RB2, IPP, JAK1, JUN, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LEPR, LINC01144, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, ZYG11A, MUTYH, NASP, NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HOOK1, PDE4B, HSPB11, CMPK1, PGM1, PIN1P1, ATP6V0B, LURAP1, YIPF1, SPATA6, L1TD1, LEPROT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, POMGNT1, PRKAA2, LRRC40, DEPDC1, NDC1, DMAP1, GNG12, PTGER3, LRRC7, ZSWIM5, CACHD1, MIER1, PTPRF, RAB3B, GPBP1L1, CYB5RL, RPE65, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, ST3GAL3, STIL, SLC1A7, COA7, SLC6A9, TAL1, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, WDR78, WLS, ANKRD13C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TM2D1, SGIP1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, DOCK7, MKNK1, PLPP3, PTCH2, B4GALT2, EIF2B3, ARTN, DIRAS3, BTF3L4, SRSF11, ZFYVE9, ZRANB2, SNORD46, SNORD38A, SNORD38B, TMEM59, IPO13, KDM4A, EFCAB14, DNAJC6) 0.389070837351976 333 0.0775316223596458 1.08733241975717 19012 0.275257283035224 3 2 1 -7.01918813190166 LTS-008 NA NA NA NA LTS-008 chr1 74492268 74492337 70 * LRRIQ3 NA 0 NA 1.161 1 NA NA NA NA NA LTS-008 chr1 74492338 78031105 3538768 * c(PIGK, FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT) 0.389064211022869 53 0.0820013141952814 1.14168130460682 1933 0.270288662222467 3 2 1 -6.94344967312998 LTS-008 chr1 78031106 91447924 13416819 * c(LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GBP4, GBP5, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, GBP6, CLCA4, USP33, ADGRL2, LRRC8B, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, GBP1, GBP2, GBP3, GNG5, ZNF326, GTF2B, LINC01140, BARHL2, CYR61, MIGA1, GBP7, UOX, GBP1P1, FLJ27354, LINC01555, GEMIN8P4, RBMXL1, SH3GLB1, ZNHIT6, GIPC2, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, NA NA NA NA NA NA NA NA NA LTS-008 DNASE2B, ADGRL4, LOC646626, LOC729930, TTLL7, RPF1, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.388068865027701 98 0.0985604890303212 1.05617593178601 5870 0.264153706088289 3 2 1 -6.7463238829703 LTS-008 NA NA NA NA LTS-008 chr1 91447925 94041762 2593838 * c(CCDC18-AS1, GLMN, HFM1, DR1, MTF2, KIAA1107, EPHX4, GFI1, SNORA66, BTBD8, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, BCAR3, ZNF644) 0.391886639328833 32 0.087256666257952 0.991812925518603 1952 0.268932489456579 3 2 1 -6.82664054068483 LTS-008 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.629 1 NA NA NA NA NA LTS-008 chr1 94047868 99358065 5310198 * c(MIR760, LOC100129046, TMEM56-RWDD3, MIR2682, DPYD-AS1, CNN3, SLC44A3, TMEM56, PLPPR5, DPYD, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, MIR137HG, MIR137, FLJ31662, SNX7, PTBP2, ABCD3, LOC729970, LOC729987, BCAR3, ARHGAP29) 0.396298684638857 46 0.0803573089485286 1.10785610894642 1709 0.2928084095914 3 2 1 -6.87629776775423 LTS-008 chr1 99358066 109159064 9800999 * c(LINC01349, LOC100129138, LOC100129620, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, S1PR1, EXTL2, NTNG1, SLC35A3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, MFSD14A, ACTG1P4, NBPF6, MIR553, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.413749561428942 45 0.0459441360389292 1.03320810050335 2820 0.27972937899723 3 2 1 -7.1529786097704 LTS-008 chr1 109159065 110881755 1722691 * c(AHCYL1, HENMT1, ATXN7L2, C1orf194, CSF1, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, SCARNA2, STXBP3, TAF13, EPS8L3, GPR61, PSRC1, STRIP1) 0.390169350964985 59 0.0538119004608629 1.09771839621329 3575 0.347795998964119 3 2 1 -6.79622378213916 LTS-008 chr1 110881756 116202485 5320730 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, PPM1J, KCNA2, KCNA3, KCNA10, KCND3, RHOC, MOV10, LOC440600, BCL2L15, PGCP1, NGF, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, LRIF1, CTTNBP2NL, FAM212B, OLFML3, RAP1A, CYMP, LOC643355, NA NA NA NA NA NA NA NA NA LTS-008 LOC643441, RBM15, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, DENND2D, SIKE1, VANGL1, CAPZA1, PROK1, SLC16A4, CD53, LRIG2) 0.389834024427876 79 0.0829779556449302 1.04117881140781 4824 0.255345964007453 3 2 1 -6.75630947417348 LTS-008 NA NA NA NA LTS-008 chr1 116202486 116206223 3738 * VANGL1 NA 0 NA 1.201 1 NA NA NA NA NA LTS-008 chr1 116206224 116243725 37502 * c(VANGL1, CASQ2) 0.366524274520229 17 0.0475597920887951 1.27340541773777 217 0.37220336462843 3 2 1 -6.75819560013223 LTS-008 chr1 116243726 120927008 4683283 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HIST2H2BA, NBPF7, ATP1A1, NHLH2, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, FAM72B, TBX15, VTCN1, TRIM45, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.353502199436948 104 0.105649603338518 1.06514708579619 3556 0.49598469889134 3 2 1 -6.75992177737516 LTS-008 chr1 120927009 121313547 386539 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.957747923691303 79 0.253296963727993 3 NA NA -5.79542647124685 LTS-008 chr1 143912360 144013853 101494 * FAM72D 0.338 1 NA 0.99215488617997 5 0.314684286229866 3 3 0 -5.76644796688514 LTS-008 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.356054411841794 63 0.0873927987884695 1.13806100057828 530 0.32330064964076 3 2 1 -6.79962609930778 LTS-008 chr1 145075855 145103928 28074 * c(NBPF20, SEC22B, PDE4DIP) 0.232 1 NA 1.17721647147705 15 0.136314237805783 4 4 0 -5.77412573551538 LTS-008 chr1 145103929 145104033 105 * c(NBPF20, SEC22B) 0.22 1 NA 1.15102414016788 4 0.172378217881495 3 3 0 -5.76442750654714 LTS-008 chr1 145104034 145109489 5456 * c(NBPF20, SEC22B) NA 0 NA 1.241 1 NA NA NA NA NA LTS-008 chr1 145109490 145284175 174686 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B) 0.257283424558772 17 0.0850787265177515 1.30782522775752 176 0.709806767101707 5 4 1 -6.73987742890912 LTS-008 chr1 145284176 145284883 708 * c(NBPF10, NBPF20, NOTCH2NL) 0.492 1 NA 1.47018430192793 19 2.6923171209076 5 5 0 -5.76441034270242 LTS-008 chr1 145284884 148902308 3617425 * c(NBPF10, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, NOTCH2NL, LINC01138, ACP6, GPR89B, PDZK1, PRKAB2, BCL9, NBPF13P, PPIAL4D, GPR89A, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.417796070948777 6 0.0845894004392197 1.34854781570877 2044 0.300186098486985 4 2 2 -6.7616940629294 LTS-008 chr1 148902309 149038810 136502 * LOC645166 NA 0 NA 0.893 1 NA NA NA NA NA LTS-008 chr1 149038811 149676551 637741 * c(FCGR1CP, LOC388692, LINC00869) NA 0 NA 0.779404299295519 40 0.250764470912039 2 NA NA -5.76716784911289 LTS-008 chr1 149676552 151501975 1825424 * c(MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, HIST2H3D, VPS72, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, NA NA NA NA NA NA NA NA NA LTS-008 HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.461996800284856 40 0.0333331955125356 1.33872991709319 4293 0.976662184046095 4 2 2 -7.4126187218139 LTS-008 NA NA NA NA LTS-008 chr1 151501976 152760544 1258569 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.435038172538561 49 0.0818004561469576 1.4185003962472 1919 0.35166397968612 4 2 2 -6.78470086395315 LTS-008 chr1 152760545 152777362 16818 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.78567540295495 40 1.37550384148817 10 NA NA -5.76441173782291 LTS-008 chr1 152777363 157485561 4708199 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, NA NA NA NA NA NA NA NA NA LTS-008 LAMTOR2, HDGF, S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, FCRL5, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.450544597495701 158 0.0873119333190562 1.37068399996922 10510 0.304779244281226 4 2 2 -6.85703074387479 LTS-008 NA NA NA NA LTS-008 chr1 157485562 157765650 280089 * c(FCRL1, FCRL3, FCRL2, FCRL5, FCRL4) 0 1 NA 1.41606479872001 511 0.412270788430345 4 4 0 -5.77090903876686 LTS-008 chr1 157765651 158324425 558775 * c(FCRL1, KIRREL, LOC646268, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.353256025756899 9 0.204348626398885 1.52252169572829 535 0.602671402192452 6 4 2 -6.76173094510752 LTS-008 chr1 158324426 158368541 44116 * c(OR10T2, CD1E) 0.43 1 NA 1.43144814098556 41 0.370189409330532 5 5 0 -5.76584915351286 LTS-008 chr1 158368542 161559508 3190967 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, OR10R2, FCRL6, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, NA NA NA NA NA NA NA NA NA LTS-008 DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.449029669241703 91 0.0900124004481173 1.38339043348682 5503 0.367383233140696 4 2 2 -6.82446451070822 LTS-008 NA NA NA NA LTS-008 chr1 161559509 161642948 83440 * c(FCGR2B, FCGR3B, HSPA7, FCGR2C) NA 0 NA 0.562908931491592 179 0.252880001850951 1 NA NA -5.76559803298535 LTS-008 chr1 161642949 161642955 7 * FCGR2B NA 0 NA 0.965 1 NA NA NA NA NA LTS-008 chr1 161642956 172380516 10737561 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-008 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.45329979537241 150 0.0424478182088728 1.37248531789118 6961 0.345122401588869 4 2 2 -7.12989340255546 LTS-008 NA NA NA NA LTS-008 chr1 172380517 176105755 3725239 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.445468921472846 30 0.0889185924987234 1.29707600990428 2261 0.363103338037112 4 2 2 -6.76716254453694 LTS-008 chr1 176105756 176118085 12330 * RFWD2 NA 0 NA 1.803 1 NA NA NA NA NA LTS-008 chr1 176118086 178822117 2704032 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.465587174937553 24 0.0281115467018628 1.50678652724864 1261 0.419130669662911 4 2 2 -7.98672021048577 LTS-008 chr1 178822118 178822734 617 * c(RALGPS2, ANGPTL1) NA 0 NA 1.367 1 NA NA NA NA NA LTS-008 chr1 178822735 181549921 2727187 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, IER5, RALGPS2, QSOX1, KIAA1614, TOR3A, SOAT1, CACNA1E, NPHS2, ACBD6, LHX4, ANGPTL1, XPR1, CEP350, FAM20B) 0.450780080619151 60 0.0672110996852749 1.35457058012312 2967 0.332743176232436 4 2 2 -6.84367970790567 LTS-008 chr1 181549922 181620446 70525 * CACNA1E NA 0 NA 1.555 1 NA NA NA NA NA LTS-008 chr1 181620447 183518981 1898535 * c(ZNF648, TEDDM1, DHX9, NMNAT2, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, SMG7) 0.461739853110393 24 0.0296500116088645 1.43614989970705 1984 0.361587934496471 4 2 2 -7.63607005952807 LTS-008 chr1 183518982 184763525 1244544 * c(ARPC5, TSEN15, FAM129A, COLGALT2, RGL1, APOBEC4, NCF2, EDEM3, C1orf21, SMG7) 0.447973931651847 31 0.0894273418053203 1.33774505100447 1135 0.348061634675405 4 2 2 -6.77792319547661 LTS-008 chr1 184763526 184763596 71 * FAM129A 0.46 1 NA 1.96 1 NA NA NA NA NA LTS-008 chr1 184763597 185958854 1195258 * c(GS1-279B7.1, IVNS1ABP, FAM129A, SWT1, RNF2, TRMT1L, HMCN1) 0.329077429481468 9 0.248001736105034 1.32094186390766 655 0.382314346946654 4 3 1 -6.73947949584849 LTS-008 chr1 185958855 185984517 25663 * HMCN1 0.48 1 NA 1.37293108888252 53 0.179058854275989 4 4 0 -5.76561930933157 LTS-008 chr1 185984518 200574959 14590442 * c(MIR181A1HG, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, CFHR4, CFHR3, OCLM, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, ZNF281, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, LINC00862, LHX9, PTGS2, PTPRC, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, CDC73, CFHR5, HMCN1, B3GALT2, KIF14) 0.449345387598402 70 0.0662454748640131 1.32107135832311 4280 0.33583557270392 4 2 2 -6.82724991952071 LTS-008 chr1 200574960 200578078 3119 * KIF14 0 1 NA 1.58679470265858 11 1.15250920722017 5 5 0 -5.76441052762393 LTS-008 chr1 200578079 200828032 249954 * c(CAMSAP2, DDX59, KIF14) 0.45716215363629 2 0.0134350288425444 1.28017789939312 269 0.200667257887705 4 2 2 -9.0816151437453 LTS-008 chr1 200828033 200828036 4 * CAMSAP2 NA 0 NA 1.56 1 NA NA NA NA NA LTS-008 chr1 200828037 201754412 926376 * c(MIR5191, CSRP1, KIF21B, CAMSAP2, PHLDA3, TMEM9, GPR25, RPS10P7, LAD1, PKP1, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1) 0.375144169008606 26 0.186263473441417 1.4526405714528 1416 0.559139250385443 5 3 2 -6.75811388373905 LTS-008 chr1 201754413 201790239 35827 * c(MIR1231, NAV1) 0.474 1 NA 1.45545691064855 142 0.226356705127655 5 5 0 -5.76644711953017 LTS-008 chr1 201790240 211746226 9955987 * c(ZBED6, MIR4260, PCAT6, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, SLC41A1, SYT14, DSTYK, LMOD1, OPTC, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, UBE2T, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, KISS1, NA NA NA NA NA NA NA NA NA LTS-008 TMEM81, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PLXNA2, LAX1, KLHDC8A, ETNK2, AVPR1B, YOD1, PRELP, IPO9, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, MIR205HG, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BTG2, C1orf116, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2) 0.453753427142068 258 0.0677641390330861 1.39683569782035 11311 0.33509697997934 4 2 2 -7.07600580497667 LTS-008 NA NA NA NA LTS-008 chr1 211746227 214837078 3090852 * c(MIR3122, LINC00538, CENPF, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.460350105655755 36 0.0461185497920374 1.31854625808811 2097 0.286099006171502 4 2 2 -7.0786067337486 LTS-008 chr1 214837079 214837238 160 * CENPF NA 0 NA 1.583 1 NA NA NA NA NA LTS-008 chr1 214837239 220089287 5252049 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, RNU5F-1, KCNK2, RRP15, KCTD3, GPATCH2, SLC30A10, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.446359570327926 24 0.049895470445868 1.47526797601021 1583 0.372383565471731 4 2 2 -7.16754765806804 LTS-008 chr1 220089288 220091551 2264 * c(RNU5F-1, SLC30A10) NA 0 NA 1.367 1 NA NA NA NA NA LTS-008 chr1 220091552 234456023 14364472 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, NA NA NA NA NA NA NA NA NA LTS-008 PRSS38, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, TRIM17, EGLN1, MAP10, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.451848788303632 276 0.0686908465364343 1.3637400863077 11409 0.341542701496671 4 2 2 -6.96353557818499 LTS-008 NA NA NA NA LTS-008 chr1 234456024 234458756 2733 * SLC35F3 NA 0 NA 0.98 1 NA NA NA NA NA LTS-008 chr1 234458757 236899015 2440259 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.45194037669043 42 0.100662073681285 1.27221530360695 2172 0.292224377729841 4 2 2 -6.78906319986955 LTS-008 chr1 236899016 243493907 6594892 * c(LOC100130331, MIR3123, SDCCAG8, CHML, CHRM3, WDR64, PLD5, FH, OPN3, LINC01139, MAP1LC3C, MTR, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, LINC01347, KMO, ACTN2, EXO1, CEP170) 0.466600988499971 61 0.0316841309334099 1.39377136853951 2607 0.329194793085258 4 2 2 -7.79420485845277 LTS-008 chr1 243493908 243663451 169544 * c(AKT3, MIR4677, SDCCAG8) 0 1 NA 1.35314449558233 53 0.386453631486139 4 4 0 -5.76527650973869 LTS-008 chr1 243663452 245180528 1517077 * c(AKT3, ZBTB18, COX20, ADSS, C1orf100, C1orf101, NA, HNRNPU, LOC339529, DESI2, EFCAB2) 0.368550499115444 10 0.192317908104726 1.37069527733191 842 0.392741940504857 4 2 2 -6.79715285483956 LTS-008 chr1 245180529 245245378 64850 * EFCAB2 0.498 1 NA 1.4065641278341 11 0.472660227763127 4 4 0 -5.76537366716079 LTS-008 chr1 245245379 248551636 3306258 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, LINC01341, CNST, OR2T6, LOC255654, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2W5, OR13G1, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670 NA NA NA NA NA NA NA NA NA LTS-008 ) 0.453008239856487 96 0.0623695049965027 1.44286980780122 2417 0.597041719817073 4 2 2 -6.91137383038618 LTS-008 NA NA NA NA LTS-008 chr1 248551637 248604614 52978 * c(OR2T6, OR2T1) 0.336 1 NA 1.55273396212438 33 0.309044387931768 5 5 0 -5.76441843887117 LTS-008 chr1 248604615 249105158 500544 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, LYPD8, SH3BP5L) 0.314681995788746 16 0.0960124991863038 1.43354675719119 292 1.70529010893595 4 3 1 -6.74040914864489 LTS-008 chr1 249105159 249214134 108976 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.28052121908779 281 0.264396886612208 4 NA NA -5.76476566301109 LTS-008 chr2 38824 39555 732 * FAM110C 0.409 1 NA 0.842748964991486 13 0.178334495562951 2 2 0 -5.76445469957951 LTS-008 chr2 39556 668533 628978 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0.441461267394993 10 0.0425811643283219 0.789942804527888 294 0.143952518717288 2 1 1 -6.82856656467925 LTS-008 chr2 668534 3212763 2544230 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.449642949054055 23 0.042040541321735 0.957912240738448 750 0.245922730108058 2 1 1 -7.70001416151663 LTS-008 chr2 3212764 3217867 5104 * TSSC1 NA 0 NA 0.882 1 NA NA NA NA NA LTS-008 chr2 3217868 26534801 23316934 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-008 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.415455078815578 273 0.0902860309709861 0.864328919950857 10324 0.211812707157907 2 1 1 -8.33285212323483 LTS-008 NA NA NA NA LTS-008 chr2 26534802 26534805 4 * ADGRF3 NA 0 NA 0.982 1 NA NA NA NA NA LTS-008 chr2 26534806 27548546 1013741 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.414929878156515 49 0.0762198027636738 0.916414943721631 2401 0.204908035126067 2 1 1 -7.01603638674329 LTS-008 chr2 27548547 27548700 154 * MPV17 NA 0 NA 0.845 1 NA NA NA NA NA LTS-008 chr2 27548701 28761981 1213281 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, KRTCAP3, SLC4A1AP, FOSL2, FTH1P3, IFT172, GCKR, GTF3C2, NRBP1, PPM1G, RBKS, FNDC4, CCDC121, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.396304329492061 6 0.0596313675845188 0.847984797217922 2012 0.170999810084921 2 1 1 -6.96102049554904 LTS-008 chr2 28761982 28763374 1393 * PLB1 0.352 1 NA 1.17183675878106 7 1.11024658350768 4 4 0 -5.76441806586287 LTS-008 chr2 28763375 28840684 77310 * PLB1 0.290384273690851 5 0.234608610242676 0.875635677311219 216 0.354969476796758 4 3 1 -6.7934682530051 LTS-008 chr2 28840685 28841078 394 * PLB1 NA 0 NA 1.119 1 NA NA NA NA NA LTS-008 chr2 28841079 36779656 7938578 * c(LOC100271832, LOC100288911, MIR4765, PLB1, MYADML, FAM179A, WDR43, ALK, SPDYA, LCLAT1, RASGRP3, FAM98A, SNORD53, LINC00486, EHD3, C2orf71, LTBP1, CAPN14, MEMO1, CRIM1, YPEL5, PPP1CB, TRMT61B, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, SNORD92, MIR558, XDH, GALNT14, CLIP4, LBH, YIPF4, DPY30, CAPN13, FEZ2) 0.330753268766564 72 0.0623089741135743 1.10184713727927 3807 0.299775287067306 3 2 1 -7.13805610241775 LTS-008 chr2 36779657 40339986 3560330 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL, FEZ2) 0.33028995014505 59 0.0967229046324483 1.02140647999609 3087 0.253962775058634 3 2 1 -6.88562115076467 LTS-008 chr2 40339987 40340019 33 * c(SLC8A1-AS1, SLC8A1) NA 0 NA 1.174 1 NA NA NA NA NA LTS-008 chr2 40340020 69746161 29406142 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3126, MIR3682, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, C1D, CCT4, B3GNT2, SIX2, PROKR1, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, LINC00309, OXER1, KCNG3, GKN2, APLF, TMEM17, SPRED2, EPAS1, EFEMP1, AAK1, CEP68, PSME4, EHBP1, RHOQ, HAAO, FSHR, NA NA NA NA NA NA NA NA NA LTS-008 CNRIP1, GFPT1, NFU1, ERLEC1, BMP10, EML4, C2orf61, STON1-GTF2A1L, LGALSL, MSH6, FOXN2, LOC339803, C2orf74, LOC339807, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, EPCAM, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, DYNC2LI1, PEX13, PIGF, BCL11A, PLEK, ETAA1, AFTPH, PPM1B, FANCL, SRBD1, PPP3R1, FBXO48, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CCDC88A, PRKCE, GKN1, KCNK12, PNO1, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, RAB1A, REL, RPS27A, THADA, ABCG5, ABCG8, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, MEIS1-AS3, UGP2, VRK2, XPO1, CAMKMT, FBXO11, CALM2, FAM161A, ANTXR1, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.330928034015309 220 0.079298543149421 1.06603380281585 12594 0.507043871810253 3 2 1 -6.92708987775977 LTS-008 NA NA NA NA LTS-008 chr2 69746162 69757172 11011 * c(SNORA36C, AAK1) 0.453 1 NA 1.04699286521125 31 0.18553977053886 3 3 0 -5.76441287297689 LTS-008 chr2 69757173 70315899 558727 * c(SNRNP27, ASPRV1, AAK1, ANXA4, PCBP1-AS1, MXD1, PCBP1, GMCL1) 0.348486754904717 2 0.0820243866176395 1.04851194312481 512 0.246466313600992 3 2 1 -6.79529853239423 LTS-008 chr2 70315900 73492824 3176925 * c(LOC100133985, MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, CYP26B1, SNRPG, SPR, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, FAM136A, SFXN5) 0.383129576168356 66 0.107268050844297 0.98602165944298 3174 0.2542088593691 3 2 1 -6.85407878852864 LTS-008 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.809 1 NA NA NA NA NA LTS-008 chr2 73493010 87085504 13592495 * c(SNAR-H, DCTN1-AS1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, NA NA NA NA NA NA NA NA NA LTS-008 TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.379433172803817 91 0.086149272728777 0.93067712094198 6977 0.22884823886787 3 2 1 -8.44212348835994 LTS-008 NA NA NA NA LTS-008 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.588 1 NA NA NA NA NA LTS-008 chr2 87092741 87407206 314466 * c(ANAPC1P1, LOC285074, RMND5A) 0.366435697306886 2 0.0360624458405139 0.647406907530116 77 0.303023358014514 3 2 1 -7.21425854091014 LTS-008 chr2 87407207 87408164 958 * RMND5A NA 0 NA 0.292 1 NA NA NA NA NA LTS-008 chr2 87408165 87424327 16163 * RMND5A NA 0 NA 0.307612392665316 54 0.319670909243603 0 NA NA -5.76488400367939 LTS-008 chr2 87424328 91937699 4513372 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.347633102610593 34 0.0931880203144416 0.987777553114483 986 0.613323795321827 3 2 1 -6.81203626730145 LTS-008 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.02430830005889 17 0.202597180748052 3 NA NA -5.76458145974834 LTS-008 chr2 95537183 95542416 5234 * c(TEKT4, LOC442028) 0.185 1 NA 0.988697975223424 45 0.267843882615499 3 3 0 -5.76457333696741 LTS-008 chr2 95542417 116257182 20714766 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, TRIM43, TMEM182, COX5B, TTL, CKAP2L, CBWD2, TEKT4, LINC01102, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, NA NA NA NA NA NA NA NA NA LTS-008 DUSP2, FOXD4L1, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, PSD4, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KCNIP3, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, MAL, ASTL, LINC01191, LOC442028, SULT1C3, NPAS2, NPHP1, COA5, FAHD2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, IL36G, STARD7, DPP10, ANKRD36B, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, MRPS5, SOWAHC, TRIM43B, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, ZNF2, PAX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, SLC35F5, TSGA10, LMAN2L, POLR1B, CHCHD5, NCK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, ZNF514, TMEM87B, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.369327862852381 242 0.0834567836558401 0.943930877194562 12912 0.317439687728884 3 2 1 -7.90030071759898 LTS-008 NA NA NA NA LTS-008 chr2 116257183 116283469 26287 * DPP10 NA 0 NA 1.67 1 NA NA NA NA NA LTS-008 chr2 116283470 136026617 19743148 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, CLASP1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, LOC389033, LINC01120, NOC2LP2, C2orf27B, MGAT5, FAR2P1, LOC440910, NA NA NA NA NA NA NA NA NA LTS-008 POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, TMEM185B, SAP130, MZT2B, MAP3K19, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, DDX18, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.378384235001263 219 0.0849697440280521 0.974115560191072 8004 0.259361264438124 3 2 1 -7.60833950057342 LTS-008 NA NA NA NA LTS-008 chr2 136026618 137852726 1826109 * c(LOC100507600, DARS, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, THSD7B, ZRANB3) NA 0 NA 0.882754809909297 759 0.169849276681845 2 NA NA -6.14402796464649 LTS-008 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.154 1 NA NA NA NA NA LTS-008 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.381890748436929 15 0.110485810336506 1.03159498186169 972 0.285967500956242 3 2 1 -6.74803208094096 LTS-008 chr2 143642881 165539112 21896232 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, NA NA NA NA NA NA NA NA NA LTS-008 IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.377573298130216 102 0.0987432423860455 0.950494354440673 7846 0.246474648350528 3 2 1 -8.37379366682457 LTS-008 NA NA NA NA LTS-008 chr2 165539113 165542581 3469 * COBLL1 NA 0 NA 1.40592329447489 69 0.392087681248559 4 NA NA -5.76448411233583 LTS-008 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 0.982 1 NA NA NA NA NA LTS-008 chr2 165544234 170129528 4585295 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, NOSTRIN, XIRP2, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.371944164777464 50 0.0719087176458417 0.973347633424138 3234 0.516899800009704 3 2 1 -6.79413635007211 LTS-008 chr2 170129529 170163768 34240 * LRP2 0.395 1 NA 0.907210406020167 57 0.115148574613796 2 2 0 -5.79070145860307 LTS-008 chr2 170163769 170366300 202532 * c(KLHL41, BBS5, LRP2) 0.4 1 NA 1.03198181891359 101 0.209118987399732 3 3 0 -5.76533232373572 LTS-008 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.892 1 NA NA NA NA NA LTS-008 chr2 170366321 170676234 309914 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.426293099348785 24 0.046157496604058 0.852603439819828 603 0.200857919196807 2 1 1 -6.75553158302409 LTS-008 chr2 170676235 170677614 1380 * METTL5 NA 0 NA 1.016 1 NA NA NA NA NA LTS-008 chr2 170677615 179259219 8581605 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, UBR3, ATF2, MYO3B, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, PDE11A, PDK1, ZAK, ATP5G3, SP3, NA NA NA NA NA NA NA NA NA LTS-008 WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, RAPGEF4-AS1, TTC30A, CIR1, TLK1) 0.397931309792793 132 0.0643980921495036 0.927465695355297 5525 0.241182746308241 3 2 1 -7.94529151163635 LTS-008 NA NA NA NA LTS-008 chr2 179259220 179260166 947 * c(MIR548N, OSBPL6) NA 0 NA 0.953 1 NA NA NA NA NA LTS-008 chr2 179260167 190732692 11472526 * c(MIR548N, MIR1258, MIR1245A, MIR3129, MIR3606, TTN-AS1, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, OSBPL6, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, FRZB, CCDC141, SLC40A1, ITGA4, ITGAV, CERKL, FSIP2, NEUROD1, DFNB59, PDE1A, GULP1, FKBP7, PMS1, DNAJC10, ASNSD1, ZC3H15, CWC22, OSGEPL1, PLEKHA3, SSFA2, MIR561, TFPI, TTN, WDR75, PRKRA, SESTD1, ZNF804A, NA NA NA NA NA NA NA NA NA LTS-008 ORMDL1) 0.387372353318074 140 0.0733285991495638 0.97008014943769 8167 0.373810526495481 3 2 1 -7.05027363292261 LTS-008 NA NA NA NA LTS-008 chr2 190732693 190738243 5551 * PMS1 NA 0 NA 0.692 1 NA NA NA NA NA LTS-008 chr2 190738244 203826688 13088445 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, NA NA NA NA NA NA NA NA NA LTS-008 PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.383577525676167 101 0.074679393953005 0.900129366533931 7897 0.227383691871501 2 1 1 -8.60753756046211 LTS-008 NA NA NA NA LTS-008 chr2 203826689 208620895 4794207 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, MIR4775, ABI2, PARD3B, CPO, MDH1B, CREB1, CTLA4, METTL21A, CCNYL1, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, DYTN, NDUFS1, INO80D, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, CARF, KLF7, ADAM23, NRP2, CD28) 0.365864479360897 47 0.0893033320004521 0.95921072606891 3393 0.246357695092573 3 2 1 -7.11083677299745 LTS-008 chr2 208620896 208633058 12163 * c(CCNYL1, FZD5) NA 0 NA 1.23510555085501 119 0.297427458633402 4 NA NA -5.76466519689384 LTS-008 chr2 208633059 208633137 79 * FZD5 NA 0 NA 0.921 1 NA NA NA NA NA LTS-008 chr2 208633138 230312194 21679057 * c(LOC100129175, LOC100130451, MIR548F2, MIR3131, MIR4268, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, SPEG, LANCL1, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, CPS1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, PIKFYVE, EPHA4, ERBB4, ACSL3, IKZF2, NA NA NA NA NA NA NA NA NA LTS-008 FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, CNPPD1, STK36, UNC80, RUFY4, CPS1-IT1, GMPPA, AGFG1, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, PLEKHM3, C2orf80, RESP18, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, ATIC, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, PID1, ANKZF1, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, PTH2R, MARCH4, WDFY1, NYAP2, USP37, PTPRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BARD1, CTDSP1, RPE, RPL37A, BCS1L, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, DNER, TTLL4) 0.367261243671385 269 0.0995127665772999 0.971886635739547 13463 0.427117402367332 3 2 1 -7.14395772766697 LTS-008 NA NA NA NA LTS-008 chr2 230312195 231675007 1362813 * c(SP140, FBXO36, SLC16A14, LOC151475, SP110, CAB39, SP100, DNER, TRIP12, SP140L) 0.363993916442934 26 0.0635531152779977 0.898679406994882 1058 0.232075805306921 3 2 1 -7.10176808028464 LTS-008 chr2 231675008 242842568 11167561 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, NA NA NA NA NA NA NA NA NA LTS-008 SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, ATG16L1, PPP1R7, USP40, HJURP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SPP2, SCARNA6, SCARNA5, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, ECEL1, EIF4E2, HDAC4, FARP2) 0.384654646855753 391 0.0703780568777969 0.963260857818389 11230 0.366509966565572 3 2 1 -7.1008262541227 LTS-008 NA NA NA NA LTS-008 chr2 242842569 243037216 194648 * LOC728323 NA 0 NA 0.914601720242062 13 0.13213828226909 2 NA NA -5.89034075130243 LTS-008 chr3 239351 403425 164075 * CHL1 0.418 1 NA 1.06638435573732 51 0.139786318722401 3 3 0 -5.765480053327 LTS-008 chr3 403426 15126556 14723131 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, CHL1, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, CNTN6, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, NA NA NA NA NA NA NA NA NA LTS-008 LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, RBSN, SETMAR, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.383884145153241 206 0.0760546379679049 1.07086573301178 8856 0.248518744097427 3 2 1 -6.79108975364556 LTS-008 NA NA NA NA LTS-008 chr3 15126557 15915451 788895 * c(MIR4270, SH3BP5-AS1, METTL6, ANKRD28, CAPN7, HACL1, COL6A4P1, RBSN, BTD, MIR563, COLQ, EAF1, SH3BP5) 0.379848919895228 14 0.035070807496571 0.970757434487187 949 0.201597297081821 3 2 1 -6.81678046194347 LTS-008 chr3 15915452 16216138 300687 * GALNT15 NA 0 NA 1.034 1 NA NA NA NA NA LTS-008 chr3 16216139 27152199 10936061 * c(MIR3714, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, SGO1, PP2D1, EFHB, LINC00691, DAZL, RFTN1, PLCL2, NKIRAS1, LINC00692, DPH3, LOC339862, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, KAT2B, OXNAD1, TBC1D5, NR1D2) 0.365195678254143 63 0.0681130163809534 1.05597279167481 2605 0.26320687238765 3 2 1 -6.74769031497902 LTS-008 chr3 27152200 28579634 1427435 * c(ZCWPW2, CMC1, NEK10, AZI2, EOMES, SLC4A7) 0.360647124096263 10 0.14014044542688 0.968966326681608 801 0.367956633875832 3 2 1 -6.78080061284831 LTS-008 chr3 29322426 53925909 24603484 * c(SNORD19B, LINC00696, ACVR2B-AS1, NRADDP, LOC100132146, BSN-AS2, PDCD6IP, PRSS46, MIR1226, MIR711, PARP3, MIR4271, KRBOX1, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, SNRK-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, CTDSPL, EIF1B, TRAIP, ARIH2, CRTAP, NPRL2, CXCR6, CSPG5, ARPP21, CCR9, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, CMTM7, NA NA NA NA NA NA NA NA NA LTS-008 TREX1, SCN11A, TUSC2, TWF2, OSBPL10, CISH, ZNF501, GPR62, CCR1, CCR3, CCR4, CCR5, CCR8, ACKR2, COL7A1, LYZL4, KLHL40, TRIM71, TMEM42, IQCF1, GLYCTK, PPM1M, LSMEM2, CTNNB1, CCDC12, CMTM8, CCDC13, CX3CR1, CYP8B1, DAG1, XIRP1, DOCK3, DUSP7, CELSR3, TTC21A, KLHDC8B, STT3B, ALAS1, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, CLASP2, RAD54L2, STAB1, GPD1L, NBEAL2, KLHL18, LARS2, NAT6, ZNF620, FBXL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ABHD14A, POC1A, CNOT10, TMEM158, NDUFAF3, ALS2CL, TMIE, MYRIP, PTPN23, DNAH1, HIGD1A, SUSD5, GNL3, GLB1, RBMS3, AMT, GNAI2, GNAT1, GOLGA4, XCR1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, ACAA1, APEH, HYAL1, CCDC36, C3orf35, GADL1, PRSS42, ZNF860, ZNF445, IMPDH2, ITGA9, ITIH1, ITIH3, ITIH4, TOPAZ1, C3orf62, TMEM110, PRSS45, AMIGO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RHOA, ZNF662, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, RPSA, IQCF3, LTF, MIRLET7G, MIR128-2, MIR135A1, MIR138-1, MIR191, MIR26A1, MAP4, MLH1, MOBP, EIF1B-AS1, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYD88, MYL3, NKTR, MIR425, VILL, ABHD5, DYNC1LI1, C3orf18, SS18L2, SHISA5, ZDHHC3, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLCD1, PLXNB1, TLR9, LZTFL1, P4HTM, SLC6A20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ELP6, SNRK, QRICH1, CMTM6, SLC25A38, ULK4, ANO10, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, PRKCD, DCP1A, GLT8D1, ZKSCAN7, SEMA3G, KIF15, PCBP4, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, SELENOK, QARS, SNORA62, RPL29, SCN5A, SCN10A, RNF123, SEMA3F, KIF9, TMPPE, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, NT5DC2, SLC26A6, SMARCC1, STAC, NEK4, SNORD19, SNORD69, MIR564, TCTA, TDGF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TGM4, TGFBR2, TKT, CLEC3B, TNNC1, FAM198A, CCR2, UBA7, UBP1, USP4, UQCRC1, VIPR1, ZNF35, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, LRRC2, FYCO1, CCDC51, WDR82, CAMP, BAP1, RTP3, LRRC2-AS1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, POMGNT2, DCLK3, HYAL2, CCK, BSN, LIMD1, UCN2, CCRL2, RPL14, SEC22C, RRP9, ZNF502, RFT1, LRRFIP2, CACNA2D2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ACTR8, ACY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ENTPD3, DCAF1, IP6K1, EPM2AIP1, TRANK1, CDC25A, DLEC1, EXOG, XYLB, OXSR1) 0.378143534719339 462 0.0916813296610165 1.07980748946441 28852 0.438975213320459 3 2 1 -6.78938717871986 LTS-008 NA NA NA NA LTS-008 chr3 53925910 55504616 1578707 * c(CACNA2D3-AS1, CACNA2D3, LRTM1, SELENOK, WNT5A, ESRG) 0.317221245214969 13 0.110999884499824 1.21998973353916 356 0.310968956141623 4 3 1 -6.78550778663775 LTS-008 chr3 55504617 55508380 3764 * WNT5A NA 0 NA 1.029 1 NA NA NA NA NA LTS-008 chr3 55508381 59033091 3524711 * c(MIR3938, ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, ERC2-IT1, WNT5A, SLMAP, ACOX2, HESX1) 0.386913354020003 84 0.0629040969726894 1.037023075772 3249 0.236996331876115 3 2 1 -6.76102094892219 LTS-008 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.839 1 NA NA NA NA NA LTS-008 chr3 59035205 67061494 8026290 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.400448048622493 38 0.0404028082344411 1.1446275194386 2204 0.25020450073773 3 2 1 -7.47545168133891 LTS-008 chr3 67061495 74419157 7357663 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.400135518410404 50 0.0899346610896273 1.05693509520366 2235 0.285613010471923 3 2 1 -6.7811214468098 LTS-008 chr3 74419158 74420309 1152 * CNTN3 NA 0 NA 1.492 1 NA NA NA NA NA LTS-008 chr3 74420310 75785442 1365133 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.357166998024391 85 0.103706792832253 1.40159048246765 199 0.649945523832616 6 4 2 -6.86002298119926 LTS-008 chr3 75785443 75785454 12 * ZNF717 NA 0 NA 0.925 1 NA NA NA NA NA LTS-008 chr3 75785455 89528814 13743360 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.352805286236456 130 0.110085196041961 1.07821101883136 1763 0.294053963891009 3 2 1 -6.81928563274625 LTS-008 chr3 89528815 90283666 754852 * EPHA3 NA 0 NA 1.11857552701157 77 0.318441005458815 3 NA NA -5.7817267079205 LTS-008 chr3 93591838 94225058 633221 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.488 1 NA 1.37114184225531 359 0.340934769399395 4 4 0 -5.77220942964959 LTS-008 chr3 94225059 120044612 25819554 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, LRRC58, COL8A1, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, GPR156, DRD3, GABRR3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NA NA NA NA NA NA NA NA NA LTS-008 NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, TUSC7, LINC00636, EPHA6, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, GSK3B, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, CD200, TRAT1, IMPG2, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ARHGAP31, CCDC191, KIAA1524, RPL24, POPDC2, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, C3orf52, QTRT2, NAA50, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD47, GUCA1C, DZIP3, TOMM70) 0.437480199607917 212 0.0936464328531621 1.33036453425421 10936 0.366550189986652 4 2 2 -6.7846510361165 LTS-008 NA NA NA NA LTS-008 chr3 120044613 120044618 6 * LRRC58 NA 0 NA 1.86 1 NA NA NA NA NA LTS-008 chr3 120044619 131188528 11143910 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, ISY1-RAB43, MIR5002, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, POLQ, ALDH1L1, PDIA5, ADCY5, FSTL1, MRPL3, MGLL, TXNRD3, OSBPL11, LRRC58, CCDC58, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, CSTA, DTX3L, ROPN1B, C3orf22, NUDT16P1, PARP15, DNAJB8, CHST13, KBTBD12, ALG1L, HACD2, COPG1, TMCC1, PLXND1, LINC01565, NUP210P1, COL6A5, GATA2, FAM162A, SEC22A, ATP2C1, NA NA NA NA NA NA NA NA NA LTS-008 GOLGB1, GP9, DNAJB8-AS1, RABL3, ILDR1, ACAD9, ASTE1, KLF15, GTF2E1, SEC61A1, HCLS1, HGD, PIK3R4, RAB43, LOC339874, H1FX-AS1, CFAP100, ITGB5, KPNA1, MIR198, MCM2, MYLK, NDUFB4, ARGFX, PODXL2, FBXO40, PLXNA1, SEMA5B, WDR5B, PARP14, ROPN1, SLC41A3, IFT122, EAF2, MUC13, HMCES, ISY1, HEG1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLC15A2, SNORA7B, TRH, FAM86HP, UMPS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CNBP, ZNF148, RAB7A, ZXDC, HSPBAP1, EFCC1, NEK11, ABTB1, PARP9, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12, CD86, STXBP5L, IQCB1) 0.446977867143556 280 0.073143272418256 1.397018422628 11214 0.346932496212309 4 2 2 -7.03300270927857 LTS-008 NA NA NA NA LTS-008 chr3 131188529 131253779 65251 * c(MRPL3, CPNE4, SNORA58) 0 1 NA 1.49803904307566 81 1.40075719117982 5 5 0 -5.76444343921751 LTS-008 chr3 131253780 132218623 964844 * c(MIR5704, CPNE4, DNAJC13, ACPP) 0.339095439527886 9 0.191609919135495 1.40319806607577 387 0.403116094011682 4 3 1 -6.77070784741595 LTS-008 chr3 132218624 132244406 25783 * DNAJC13 0.454 1 NA 1.32464364650683 63 0.257348294933683 4 4 0 -5.76445842912829 LTS-008 chr3 132244407 132257916 13510 * DNAJC13 NA 0 NA 1.51252043939541 47 0.208768066183287 5 NA NA -5.76459156739467 LTS-008 chr3 132257917 132277014 19098 * ACAD11 NA 0 NA 0.775 1 NA NA NA NA NA LTS-008 chr3 132277015 132295887 18873 * ACAD11 NA 0 NA 0.915641753927705 39 0.179703955078861 3 NA NA -5.77106375778076 LTS-008 chr3 132295888 132297600 1713 * ACAD11 NA 0 NA 1.419 1 NA NA NA NA NA LTS-008 chr3 132297601 141161876 8864276 * c(NPHP3-ACAD11, MIR4788, STAG1, TOPBP1, PISRT1, DZIP1L, EPHB1, MRAS, ZBTB38, ANAPC13, ARMC8, NPHP3, TRIM42, KY, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, IL20RB, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, BPESC1, RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, TF, PRR23A, UBA5, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, NA NA NA NA NA NA NA NA NA LTS-008 SOX14, ACAD11, BFSP2, SPSB4, PXYLP1, COPB2) 0.44484958967934 89 0.0877842821002774 1.4173306347737 5010 0.365582496381416 4 2 2 -7.02167667088185 LTS-008 NA NA NA NA LTS-008 chr3 141161877 141161880 4 * ZBTB38 NA 0 NA 0.98 1 NA NA NA NA NA LTS-008 chr3 141161881 179503289 38341409 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, LINC01014, SLC9A9-AS1, LOC101243545, KCNMB2, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, ECT2, NA NA NA NA NA NA NA NA NA LTS-008 RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, U2SURP, ZBTB38, NAALADL2, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, GPR160, KCNMB3, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, ATP1B3, CLDN11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 P2RY1, NMD3, COMMD2, ZNF639, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, MFN1, PRKCI, MYNN, EIF5A2, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, GNB4, ZMAT3, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SSR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SCARNA7, MIR551B, MIR569, TERC, TFDP2, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, PHC3, ARL14, SPATA16, EIF2A, ZIC4, HPS3, ACTRT3, GFM1, ACTL6A, B3GALNT1, TNFSF10, GMPS, USP13, SLC33A1, EGFEM1P, CHST2, RNF7, TSC22D2, P2RY14) 0.444964060349615 247 0.0815479113642124 1.35100264334394 15328 0.507746659181326 4 2 2 -6.87271552527099 LTS-008 NA NA NA NA LTS-008 chr3 179503290 179513488 10199 * c(PEX5L, USP13) 0 1 NA 1.36266592189424 93 0.723094265295362 4 4 0 -5.76443145037965 LTS-008 chr3 179513489 182665253 3151765 * c(DNAJC19, TTC14, ATP11B, CCDC39, SOX2-OT, FLJ46066, PEX5L, DCUN1D1, SOX2, FXR1) 0.349828409041836 13 0.198819690249153 1.35180059573069 1081 0.404213398457356 4 3 1 -6.7776670607095 LTS-008 chr3 182665254 182681740 16487 * DCUN1D1 0.487 1 NA 1.05775499480485 13 0.220214231357348 3 3 0 -5.76441861802448 LTS-008 chr3 182681741 183753930 1072190 * c(LINC00888, ABCC5, ABCC5-AS1, HTR3D, MCF2L2, LAMP3, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, MAP6D1, B3GNT5, KLHL6) 0.46620514728583 7 0.0299984126564184 1.33525401634677 1286 0.275343062248863 4 2 2 -7.72028279379833 LTS-008 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.499 1 NA NA NA NA NA LTS-008 chr3 183754123 194116157 10362035 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, NA NA NA NA NA NA NA NA NA LTS-008 ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.452159249589801 205 0.0565132729888475 1.41325696564743 7440 0.425565691526816 4 2 2 -7.08166368234353 LTS-008 NA NA NA NA LTS-008 chr3 194116158 194308658 192501 * c(TMEM44-AS1, GP5, LINC00884, ATP13A3, TMEM44) 0.462267314219076 6 0.025115732121521 1.27723410399307 276 0.235456307105999 4 2 2 -7.85650810311386 LTS-008 chr3 194308659 194308765 107 * c(TMEM44-AS1, TMEM44) 0.435 1 NA 1.66213889524877 3 0.975275858411352 5 5 0 -5.76441040082358 LTS-008 chr3 194308766 195346677 1037912 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, ACAP2, APOD, PPP1R2, LSG1, TMEM44) 0.370884518336128 20 0.141522510762887 1.33836488766375 710 0.341693544392145 4 2 2 -6.82098255002881 LTS-008 chr3 195346678 195346709 32 * character(0) NA 0 NA 0.804 1 NA NA NA NA NA LTS-008 chr3 195346710 195426484 79775 * c(MIR570, SDHAP2) 0.38338849301044 2 0.104651803615609 0.852535100031049 42 0.974825162560434 3 2 1 -6.73904796115647 LTS-008 chr3 195426485 195447708 21224 * character(0) NA 0 NA 1.07 1 NA NA NA NA NA LTS-008 chr3 195447709 197770049 2322341 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.421703158111209 108 0.119605530248578 1.32922472486073 3292 0.498918262658069 4 2 2 -6.73512248053566 LTS-008 chr3 197770050 197770512 463 * LMLN NA 0 NA 1.46507927433213 13 0.236637394361619 5 NA NA -5.76442984642855 LTS-008 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.228 1 NA 0.731600248397101 13 0.175850059965141 2 2 0 -5.76540415494187 LTS-008 chr4 60336 438327 377992 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.389974290748975 6 0.0853426427213656 0.692986298534753 331 0.173669040482413 2 1 1 -6.97080903574255 LTS-008 chr4 438328 466445 28118 * c(ZNF721, ABCA11P) NA 0 NA 0.813 1 NA NA NA NA NA LTS-008 chr4 466446 3422562 2956117 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NA NA NA NA NA NA NA NA NA LTS-008 NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.445042333407429 112 0.0682377924317516 0.799592427264057 5227 0.191005339055395 2 1 1 -6.78813833033518 LTS-008 NA NA NA NA LTS-008 chr4 3422563 3424065 1503 * RGS12 NA 0 NA 1.033 1 NA NA NA NA NA LTS-008 chr4 3424066 3591786 167721 * c(DOK7, LINC00955, HGFAC, LRPAP1, RGS12) 0.408797543806747 49 0.0918469778868024 0.933593841343153 456 0.30047902048799 2 1 1 -6.77849780224458 LTS-008 chr4 3591787 3768424 176638 * c(LOC100133461, ADRA2C, LINC00955) NA 0 NA 0.781 1 NA NA NA NA NA LTS-008 chr4 3768425 25769143 22000719 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, NA NA NA NA NA NA NA NA NA LTS-008 FBXL5, NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, FAM86EP, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.445635920524873 260 0.0601503189535257 0.825421172312742 8854 0.203983731176513 2 1 1 -7.19337869163763 LTS-008 NA NA NA NA LTS-008 chr4 25769144 40810650 15041507 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, SEL1L3, PDS5A, UBE2K, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, FAM114A1) 0.443892385438733 69 0.0705959650499228 0.763888326453276 3929 0.181256000838708 2 1 1 -7.2156288657963 LTS-008 chr4 40810651 40810663 13 * NSUN7 0.447 1 NA 1.381 1 NA NA NA NA NA LTS-008 chr4 40810664 49063872 8253209 * c(UCHL1-AS1, ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, APBB2, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, UCHL1, NSUN7, CWH43, PHOX2B) 0.44646840991157 89 0.0725439442742689 0.799741173280106 4401 0.218303555496094 2 1 1 -6.78993768925331 LTS-008 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.715148607284356 5 0.0120498962651137 2 NA NA -5.77552900674372 LTS-008 chr4 52709193 52714511 5319 * DCUN1D4 0.467 1 NA 0.786667096835552 17 0.314242366185533 2 2 0 -5.764414801655 LTS-008 chr4 52714512 56238886 3524375 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.421450078855143 29 0.124042827897099 0.837005749601672 1669 0.222252237566933 2 1 1 -6.83856860066488 LTS-008 chr4 56238887 68906584 12667698 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, LOC401134, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.41198586083177 58 0.119836503865901 0.779333962538691 2898 0.205186526522627 2 1 1 -6.82093306384687 LTS-008 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.254992251310279 43 0.218102455426625 0 NA NA -5.76456070893089 LTS-008 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.75 1 NA NA NA NA NA LTS-008 chr4 68907461 69363297 455837 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.4765182132589 7 0.0366144650052277 0.808582928688188 400 0.173516351998962 2 1 1 -7.75459338214326 LTS-008 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.52 1 NA NA NA NA NA LTS-008 chr4 69402959 69512430 109472 * UGT2B17 0.403470156065078 2 0.0586898628384835 1.39741690862559 47 0.36102948442149 5 3 2 -6.73993827220621 LTS-008 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.938 1 NA NA NA NA NA LTS-008 chr4 69512574 90165688 20653115 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, NA NA NA NA NA NA NA NA NA LTS-008 EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 G3BP2, HNRNPDL) 0.441038523926889 272 0.0815563527059839 0.792299861362294 12798 0.199102453720404 2 1 1 -6.76523534429073 LTS-008 NA NA NA NA LTS-008 chr4 90165689 98109018 7943330 * c(PDLIM5, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.446389391645436 50 0.0722623225844985 0.860032718561837 1655 0.856965507043569 2 1 1 -6.82627756289454 LTS-008 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.711 1 NA NA NA NA NA LTS-008 chr4 98480011 187003643 88523633 * c(SNHG8, SCOC-AS1, CLDN24, PP12613, MIR1243, MIR2054, MIR1305, MIR1973, MIR3140, MIR4276, MIR3945, MIR3684, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, LOC100507053, GIMD1, SEC24B-AS1, MIR4799, MIR3688-2, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, CENPE, RRH, PLK4, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, CYP2U1, DDIT4L, NA NA NA NA NA NA NA NA NA LTS-008 WDR17, CLCN3, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, SPATA4, TRAM1L1, ENPP6, SLC9B2, CPE, ASB5, SLC9B1, CTSO, ZNF827, SH3D19, MGAT4D, WWC2-AS2, FAM218A, C4orf45, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, SGMS2, SYNPO2, AGA, EDNRA, EGF, EIF4E, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, PRIMPOL, ENPEP, ETFDH, FABP2, ACSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, METAP1, KIAA0922, TRIM2, ANP32C, SLC7A11, GAB1, ELMOD2, NPNT, CCDC110, MFSD8, LOC256880, NOCT, FBXO8, PPA2, DAPP1, DKK2, GK3P, INTU, ARFIP1, PDLIM3, ZNF330, GLRB, GPM6A, LINC01091, RPL34-AS1, LINC01098, RNF175, STPG2, ANK2, GRIA2, SLC25A4, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, H2AFZ, ANXA2P1, HADH, ANXA5, HMGB2, HPGD, LOC340017, CFI, PRSS48, LRIT3, ANKRD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 IL2, PCNAP1, IL15, ING2, IRF2, LOC389247, TRIM61, HELT, LINC01061, C4orf3, FAM92A1P2, MAD2L1, SMAD1, MANBA, MGST2, NR3C2, GUSBP5, C4orf47, GALNTL6, MIR302B, MTTP, NDUFC1, NEK1, NFKB1, NPY1R, NPY2R, NPY5R, CISD2, SPOCK3, AADAT, LEF1, FAM198B, LARP7, EMCN, MYOZ2, ASIC5, GALNT7, GATB, PITX2, PLRG1, CLDN22, EXOSC9, GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, TET2, DCHS2, PPID, ARHGEF38, HPF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MCUB, MARCH1, BANK1, LARP1B, BBS7, NEIL3, FBXW7, PPP3CA, TMEM144, TMA16, UFSP2, ZGRF1, AP1AR, MAML3, DDX60, CDKN2AIP, TENM3, TMEM184C, LRP2BP, PDGFC, FSTL5, BDH2, STOX2, INTS12, ANKRD50, RNF150, PCDH10, CFAP97, FNIP2, SH3RF1, METTL14, OSTC, IL21, RAP1GDS1, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPL34, RPS3A, MSMO1, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, SLED1, HHIP, TNRC18P1, CEP170P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, TACR3, MIR577, MIR578, TDO2, TLL1, TLR2, TLR3, TRPC3, LINC00290, LOC728175, CETN4P, FAM160A1, MIR3945HG, UBE2D3, UCP1, UGT8, VEGFC, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, CENPU, HAND2-AS1, GSTCD, MAP9, TNIP3, JADE1, DNAJB14, GLRA3, WWC2, NAA15, ABHD18, ALPK1, CXXC4, CEP44, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP3, SNX25, TTC29, CASP6, MND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SLC10A7, TKTL2, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, SORBS2, MGARP, CBR4, PRSS12, FHDC1, LAMTOR3, PDE5A, SAP30, INPP4B, CCNA2, SNORD73A, FLJ20021, PAPSS1, LOC90768, PRMT9, DDX60L, LRAT, NAF1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, HAND2, RAPGEF2, MFAP3L, LRBA, SEC24D) 0.4435678491918 600 0.0671251416258173 0.798499201036208 31115 0.328755044461254 2 1 1 -6.78553698806111 LTS-008 NA NA NA NA LTS-008 chr4 187003644 190878661 3875018 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3) 0.417623697778208 30 0.0836092443879649 0.871865673475089 1086 0.208114778395235 2 1 1 -7.14993996815076 LTS-008 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.944676441852938 48 1.11497813144442 3 NA NA -5.76497459074688 LTS-008 chr5 140347 140532 186 * PLEKHG4B 0.464 1 NA 1.93451121152365 3 0.490229538073748 6 6 0 -5.76441200357981 LTS-008 chr5 140533 36036098 35895566 * c(SNORD123, LOC100130744, PDCD6, CDH6, MIR4279, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, CDH9, CDH10, LOC100996325, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, TPPP, EXOC3, C1QTNF3, EXOC3-AS1, UGT3A1, CAPSL, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, PLEKHG4B, C5orf38, IRX2, TTC23L, DAP, UGT3A2, NA NA NA NA NA NA NA NA NA LTS-008 ADAMTS16, DNAH5, CCT5, PDZD2, FBXL7, ICE1, AMACR, LINC01018, PP7080, RAI14, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, IL7R, LRRC14B, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, BRIX1, C5orf22, CEP72, ANKH, PRLR, PRDM9, AHRR, RAD1, SDHA, GOLPH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LINC01021, AGXT2, MRPL36, ANKRD33B, SLC6A3, SLC9A3, BRD9, SRD5A1, TARS, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.39043930934288 279 0.0780914861847183 1.77002802276131 11122 0.439304154107519 6 4 2 -6.90696317827374 LTS-008 NA NA NA NA LTS-008 chr5 36036099 36037846 1748 * UGT3A2 NA 0 NA 1.394 1 NA NA NA NA NA LTS-008 chr5 36037847 44389155 8351309 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MROH2B, EGFLAM, NADK2, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, FGF10, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, NIPBL-AS1, LOC648987, SKP2, SLC1A3, C5orf42, MIR580, NA NA NA NA NA NA NA NA NA LTS-008 C6, C7, C9, ZNF131, CARD6, OSMR, LMBRD2, NUP155) 0.398082282423445 52 0.0764257222775227 1.68132661654986 5262 0.434638977758853 5 3 2 -6.88278332692309 LTS-008 NA NA NA NA LTS-008 chr5 44389156 45353296 964141 * c(MRPS30, HCN1) 0 1 NA 2.06342348982223 125 0.660877395100512 7 7 0 -5.7644238068708 LTS-008 chr5 45353297 45696278 342982 * HCN1 NA 0 NA 1.94309171864722 31 0.37521651957122 7 NA NA -5.77026110066246 LTS-008 chr5 49692017 50139286 447270 * c(EMB, PARP8) 0.481 1 NA 0.53713807448106 262 0.117602382529893 1 1 0 -5.76562258472782 LTS-008 chr5 50139287 65892243 15752957 * c(LRRC70, FAM159B, LOC100303749, MIR449C, MIR5687, IPO11-LRRC70, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MIER3, CDC20B, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, NA NA NA NA NA NA NA NA NA LTS-008 PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, CENPK, LOC642366, SMIM15, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, HSPB3, NDUFAF2) 0.242520798905904 120 0.0730742758425697 0.545143481119836 6560 0.156403276529354 1 1 0 -6.80642944405991 LTS-008 NA NA NA NA LTS-008 chr5 65892244 65892713 470 * MAST4 NA 0 NA 0.564453424062516 10 0.0999927219573727 1 NA NA -5.76445906703173 LTS-008 chr5 65892714 66166614 273901 * MAST4 0.453 1 NA 0.743841215616844 23 0.116173306547374 2 2 0 -5.82018634078879 LTS-008 chr5 66166615 69373163 3206549 * c(NA, OCLN, CDK7, MARVELD2, CCDC125, MAST4, CD180, PIK3R1, RAD17, SLC30A5, CENPH, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, SERF1A, CCNB1, MRPS36) 0.420197950360679 26 0.126656804609331 0.728491859863114 1427 0.221498412226708 2 1 1 -7.02830151377602 LTS-008 chr5 69373164 69373178 15 * c(GUSBP3, SMN1, SMN2, SERF1A) NA 0 NA 0.975 1 NA NA NA NA NA LTS-008 chr5 69373179 70248775 875597 * c(GUSBP9, SMA4, SMA5, LOC441081, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.371433992364444 39 0.249147464043699 0 NA NA -6.28509616839791 LTS-008 chr5 70248776 70265413 16638 * c(GUSBP9, NAIP, SMN2) NA 0 NA 1.763 1 NA NA NA NA NA LTS-008 chr5 70265414 70370166 104753 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 1.30724018783193 47 0.303076531430252 4 NA NA -5.76441104588832 LTS-008 chr5 70370167 70378601 8435 * c(GUSBP9, NAIP, LOC647859) NA 0 NA 0.001 1 NA NA NA NA NA LTS-008 chr5 70378602 93855273 23476672 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-008 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.412873963008945 240 0.0816079155648837 0.74898842502331 10250 0.270622567915708 2 1 1 -7.38878876488029 LTS-008 NA NA NA NA LTS-008 chr5 93855274 96367979 2512706 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.424049990718882 58 0.047240039104724 0.692549698898493 2211 0.155588948456536 2 1 1 -7.7503053781887 LTS-008 chr5 96367980 96371042 3063 * character(0) 0.25 1 NA 1.05093094803375 63 0.27424582616602 3 3 0 -5.7644101346647 LTS-008 chr5 96371043 126705690 30334648 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, NA NA NA NA NA NA NA NA NA LTS-008 PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.409687599187627 195 0.091065694523273 0.744785711401251 8503 0.196854291014257 2 1 1 -8.33544160236569 LTS-008 NA NA NA NA LTS-008 chr5 126705691 126732167 26477 * MEGF10 NA 0 NA 0.784 1 NA NA NA NA NA LTS-008 chr5 126732168 129522129 2789962 * c(KIAA1024L, MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.426360856513775 34 0.0487011787622664 0.80497055739059 1446 0.207911689964037 2 1 1 -6.73863349286561 LTS-008 chr5 129522130 134332018 4809889 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-008 FNIP1, DDX46) 0.407303265489517 54 0.117563639337169 0.713048602443971 4482 0.199912411975825 2 1 1 -7.51595479727293 LTS-008 NA NA NA NA LTS-008 chr5 134332019 136956869 2624851 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.413949382089136 38 0.0530277108909376 0.79607320098652 1197 0.213636650392709 2 1 1 -6.75640633284457 LTS-008 chr5 136956870 136956928 59 * KLHL3 NA 0 NA 0.676 1 NA NA NA NA NA LTS-008 chr5 136956929 140553623 3596695 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, NA NA NA NA NA NA NA NA NA LTS-008 PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.411439117024832 99 0.0804366215896987 0.737596827537036 5469 0.18712790885495 2 1 1 -7.0886081883017 LTS-008 NA NA NA NA LTS-008 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.209 1 NA NA NA NA NA LTS-008 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) NA 0 NA 0.265861956470914 59 0.0458142132869259 0 NA NA -5.77119904904385 LTS-008 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.356 1 NA NA NA NA NA LTS-008 chr5 140559822 143856528 3296707 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, ARAP3, TAF7, LOC729080, NA NA NA NA NA NA NA NA NA LTS-008 NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.420385489270829 67 0.0963714123485079 0.755552606570184 3750 1.13559020807509 2 1 1 -6.73829423413466 LTS-008 NA NA NA NA LTS-008 chr5 143856529 143856969 441 * KCTD16 NA 0 NA 0.838256540806033 11 0.0846995760427299 2 NA NA -5.76450773813767 LTS-008 chr5 145144392 145197411 53020 * PRELID2 0.247 1 NA 1.37178429759512 37 0.290504301601972 4 4 0 -5.76532794412558 LTS-008 chr5 145197412 175386651 30189240 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, SLU7, CPLX2, FAXDC2, FAM114A2, TCERG1, SPINK5, SOX30, SYNPO, PWWP2A, C1QTNF2, SCGB3A2, C5orf47, PPARGC1B, C5orf58, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, NKX2-5, SLC36A2, SPINK13, CREBRF, JAKMIP2-AS1, PPP1R2P3, FAM71B, PRELID2, SH3RF2, NA NA NA NA NA NA NA NA NA LTS-008 PLAC8L1, RNF145, ADRB2, DOCK2, DPYSL3, DRD1, SLC26A2, DUSP1, EBF1, STK32A, SLC36A1, FABP6, FAT2, ABLIM3, FOXI1, HMGXB3, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, IL17B, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, NDST1, HTR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ARSI, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, C5orf46, ARHGEF37, LCP2, SPINK6, MIR103A1, MIR143, MIR146A, MIR218-2, SPINK14, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, PDE6A, LARS, PDGFRB, HMP19, RBM27, NEURL1B, POU4F3, SPDL1, THG1L, PPP2R2B, GALNT10, RBM22, NMUR2, ERGIC1, TENM2, RARS, RPS14, ZBED8, GRXCR2, SPINK9, SGCD, RANBP17, SLC6A7, SLIT3, BNIP1, SPARC, SPINK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SNORA74B, STK10, MIR585, TCOF1, TTC1, CARMN, PCYOX1L, CCNJL, SH3TC2, PANK3, SAP30L, CPEB4, CAMK2A, FBXO38, TIGD6, THOC3, SPINK7, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1, CD74, JAKMIP2) 0.21908323682377 369 0.057202269257647 1.44425494248927 17159 0.623233499829098 5 4 1 -7.23028077072125 LTS-008 NA NA NA NA LTS-008 chr5 175386652 175387332 681 * THOC3 NA 0 NA 0.358721342533096 40 0.257345577296067 0 NA NA -5.76472026841118 LTS-008 chr5 175387333 175394264 6932 * THOC3 NA 0 NA 0.792578102089847 49 0.549088714750783 2 NA NA -5.76441041796823 LTS-008 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.236 1 NA NA NA NA NA LTS-008 chr5 175395033 177161968 1766936 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, THOC3, UNC5A, PDLIM7) 0.216392696192765 47 0.0718205506060884 1.42869891569972 3216 0.377310421617735 5 4 1 -6.9606381105255 LTS-008 chr5 177161969 177163488 1520 * FAM153A NA 0 NA 0.262 1 NA NA NA NA NA LTS-008 chr5 177163489 177220748 57260 * FAM153A NA 0 NA 0.810314226168337 44 0.573336134799849 2 NA NA -5.76444250481104 LTS-008 chr5 177220749 180374817 3154069 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.223603848026737 101 0.0527124762130831 1.43299155318424 3724 0.413548772718196 5 4 1 -7.02043505030728 LTS-008 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.494 1 NA NA NA NA NA LTS-008 chr5 180375294 180430895 55602 * c(BTNL3, BTNL8) 0.21026883194423 5 0.0392912203933652 2.56806329456258 69 0.586761648273009 11 9 2 -6.7368918382606 LTS-008 chr5 180430896 180430924 29 * BTNL3 NA 0 NA 1.435 1 NA NA NA NA NA LTS-008 chr5 180430925 180622615 191691 * c(BTNL3, BTNL9, OR2V1, OR2V2, TRIM7) 0.2381784826145 7 0.0832323197298925 1.39928192589283 219 0.330904694883675 5 4 1 -6.77045487221475 LTS-008 chr5 180622616 180688111 65496 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 1.45176672992932 307 0.268597753069437 5 NA NA -5.7672506566518 LTS-008 chr6 203389 312023 108635 * DUSP22 0.446 1 NA 1.00787275718881 25 0.211316216446664 3 3 0 -5.76696647026481 LTS-008 chr6 312024 29691019 29378996 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, NA NA NA NA NA NA NA NA NA LTS-008 DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, ZSCAN23, NKAPL, TOB2P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, DUSP22, LYRM4, MRS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZSCAN12, KIAA0319, NUP153) 0.363000437144588 406 0.0771396290383937 1.10492789032556 15302 0.400005115264134 3 2 1 -7.01192963446466 LTS-008 NA NA NA NA LTS-008 chr6 29691020 29691090 71 * character(0) 0.392 1 NA 0.436 1 NA NA NA NA NA LTS-008 chr6 29691091 29910396 219306 * character(0) 0.362374196676223 20 0.0438142010143551 1.0159977711773 182 1.54410036245392 6 4 2 -6.75837131105297 LTS-008 chr6 29910397 29910429 33 * character(0) 0.401 1 NA 0.198 1 NA NA NA NA NA LTS-008 chr6 29910430 29911223 794 * character(0) 0.366770892965308 28 0.127498869172286 0.459551980176675 40 0.400170463677668 3 2 1 -6.73758626300068 LTS-008 chr6 29911224 29911225 2 * character(0) 0.331 1 NA 0.563 1 NA NA NA NA NA LTS-008 chr6 29911226 29912147 922 * character(0) 0.45 1 NA 1.1056948132044 3 0.158209776351948 3 3 0 -5.76446704972699 LTS-008 chr6 29912148 32485488 2573341 * HLA-DRB5 0.348417066186147 269 0.0820978914443906 1.13127392743097 7829 0.274576262405058 3 2 1 -6.90454693702698 LTS-008 chr6 32485489 32489929 4441 * HLA-DRB5 0.313529750801372 31 0.129292832589977 2.31155737270783 63 1.39812673024109 7 5 2 -6.73313070012024 LTS-008 chr6 32489930 32489933 4 * HLA-DRB5 0.02 1 NA 0.066 1 NA NA NA NA NA LTS-008 chr6 32489934 32548135 58202 * HLA-DRB5 0.267135404012519 8 0.182140791304811 0.8340436905762 39 0.527777982858591 1 1 0 -6.75644971604604 LTS-008 chr6 32548136 32548614 479 * HLA-DRB5 NA 0 NA 1.236 1 NA NA NA NA NA LTS-008 chr6 32548615 32552133 3519 * HLA-DRB5 0.29329680372879 32 0.104047368244995 1.66752984469567 59 0.70367842480825 11 8 3 -6.73466067792949 LTS-008 chr6 32552134 32609150 57017 * c(HLA-DQA1, HLA-DRB5) 0.283088344853982 20 0.103634415641056 0.990125353427251 51 0.47616245209415 4 3 1 -6.77053735113976 LTS-008 chr6 32609151 32609200 50 * HLA-DQA1 NA 0 NA 0.342 1 NA NA NA NA NA LTS-008 chr6 32609201 32627536 18336 * HLA-DQA1 0.380725724058006 6 0.159334553691282 0.496399449660346 82 0.479648862205212 3 2 1 -6.7605756815399 LTS-008 chr6 32627537 33035512 407976 * character(0) 0.338651403452633 77 0.0696916948482893 1.10794752599554 895 0.90496154374272 6 4 2 -6.84953332193675 LTS-008 chr6 33035513 33054760 19248 * character(0) 0.35 1 NA 2.5024430706515 123 27.0715554890029 9 9 0 -5.76441014918882 LTS-008 chr6 33054761 35748945 2694185 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.334083688917009 84 0.0886561645866757 1.13235448327571 4291 0.3030501391473 3 2 1 -6.95482302006015 LTS-008 chr6 35748946 35765131 16186 * c(CLPS, CLPSL1) NA 0 NA 0.705330125582293 39 0.10690440569413 2 NA NA -5.77685729621371 LTS-008 chr6 35765132 35773087 7956 * LHFPL5 NA 0 NA 1.177 1 NA NA NA NA NA LTS-008 chr6 35773088 37284644 1511557 * c(MIR3925, CDKN1A, STK38, SLC26A8, MAPK14, TMEM217, FGD2, PI16, C6orf89, KCTD20, PXT1, LHFPL5, MTCH1, BRPF3, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, PIM1, TBC1D22B, MAPK13, CPNE5, SRSF3, SRPK1) 0.35506989180043 49 0.0526883647071173 1.08959219840952 2042 0.276948100160867 3 2 1 -6.83340231747367 LTS-008 chr6 37284645 37284803 159 * TBC1D22B NA 0 NA 1.17 1 NA NA NA NA NA LTS-008 chr6 37284804 51927529 14642726 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR4647, MIR4641, MIR4642, MIR4462, RCAN2, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, BTBD9, FOXP4, KLHDC3, TAF8, C6orf141, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, ADGRF2, TSPO2, UNC5CL, ENPP4, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, CD2AP, ZNF318, DEFB110, NA NA NA NA NA NA NA NA NA LTS-008 DEFB112, DEFB113, DEFB114, YIPF3, USP49, MDGA1, ADGRF1, GNMT, TNFRSF21, GLO1, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, TREML1, TREML3P, SLC35B2, GLYATL3, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MUT, NFKBIE, NFYA, MRPL2, CYP39A1, PEX6, PGC, PGK2, PKHD1, CLIC5, TREM2, TREM1, POLH, GTPBP2, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SAYSD1, TRERF1, LRFN2, AARS2, XPO5, PTK7, ENPP5, PRPH2, RHAG, ZFAND3, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, TFAP2B, BYSL, CRISP2, TDRG1, VEGFA, PLA2G7, TFEB, TREML2, TFAP2D, KCNK16, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.347654147317619 276 0.0724850034919313 1.15811562355189 12136 0.333423469510187 3 2 1 -7.48293746310835 LTS-008 NA NA NA NA LTS-008 chr6 51927530 51929666 2137 * PKHD1 NA 0 NA 0.647 1 NA NA NA NA NA LTS-008 chr6 51929667 53516444 1586778 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.372649419032097 18 0.0401819391679162 1.05989999854621 1369 0.212875601946758 3 2 1 -6.73666532381716 LTS-008 chr6 53516445 53516450 6 * KLHL31 NA 0 NA 1.355 1 NA NA NA NA NA LTS-008 chr6 53516451 58445594 4929144 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GUSBP4, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.340060184535165 95 0.100407961788862 1.16115350920066 2585 0.312151019839792 3 2 1 -7.09254819144487 LTS-008 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.96 1 NA NA NA NA NA LTS-008 chr6 62390154 62887099 496946 * KHDRBS2 0.49 1 NA 0.801737593140567 63 0.192190251256226 2 2 0 -5.76480093640299 LTS-008 chr6 62887100 91225135 28338036 * c(KHDC1L, HMGN3-AS1, MIR4282, LOC100506804, MIR4464, KCNQ5-AS1, SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, RWDD2A, MB21D1, CNR1, COL9A1, COL12A1, COL19A1, COX7A2, RIPPLY2, IRAK1BP1, B3GAT2, SDHAF4, CD109, PM20D2, SRSF12, KHDC3L, CFAP206, PRSS35, LCA5, EEF1A1, KHDRBS2, C6orf163, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, MDN1, PHF3, ORC3, GABRR1, GABRR2, MTO1, IBTK, SENP6, SLC17A5, SNORD50A, FILIP1, HTR1B, HTR1E, NA NA NA NA NA NA NA NA NA LTS-008 DPPA5, EYS, IMPG1, GJB7, SNHG5, NA, MIR30A, MIR30C2, ME1, LOC441155, OOEP, SLC25A51P1, MYO6, NT5E, CYB5R4, UBE2J1, LGSN, PGM3, PHIP, AKIRIN2, DDX43, FAM46A, TMEM30A, LMBRD1, KCNQ5, RARS2, SMIM8, LYRM2, SNX14, FAM135A, ADGRB3, RRAGD, BCKDHB, BACH2, SMAP1, RNY4, LINC01590, ELOVL4, MAP3K7, SNORD50B, TPBG, TTK, PTP4A1, OGFRL1, LINC00472, KHDC1, SPACA1, SH3BGRL2, GJA10, RNGTT, LINC01621, UBE3D, TBX18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HMGN3, SNAP91, CASP8AP2) 0.441155001534558 248 0.0926160768495497 0.812188852178146 10828 0.213380540205819 2 1 1 -6.89700783070816 LTS-008 NA NA NA NA LTS-008 chr6 91225136 91225361 226 * MAP3K7 0.474 1 NA 0.728005322002166 7 0.10746893238779 2 2 0 -5.76450379404022 LTS-008 chr6 91225362 94067981 2842620 * c(MIR4643, EPHA7, MAP3K7) 0.280556312084602 9 0.204743131752936 0.822661150962841 253 0.218917556999565 2 2 0 -6.91188644839046 LTS-008 chr6 94067982 96035175 1967194 * c(EPHA7, TSG1, MANEA) 0.483 1 NA 0.925099377608695 79 0.250469836987423 3 3 0 -6.05588784985166 LTS-008 chr6 96035176 99284824 3249649 * c(MIR2113, FUT9, KLHL32, UFL1, MMS22L, NDUFAF4, POU3F2, MANEA, GPR63, FHL5) 0.460978082542895 25 0.0253069160507558 0.842016943965568 783 0.208563180856415 2 1 1 -7.9158964876954 LTS-008 chr6 99284825 99880380 595556 * c(PNISR, FBXL4, COQ3, POU3F2, FAXC, USP45) 0.405 1 NA 0.820850521659036 345 0.263333509949043 2 2 0 -5.76920548727629 LTS-008 chr6 99880381 105198267 5317887 * c(TSTD3, ASCC3, GRIK2, HACE1, PRDM13, SIM1, MCHR2-AS1, MCHR2, USP45, CCNC) 0.250525296553428 9 0.235619396485094 0.837689515068684 1093 0.264914869171336 2 2 0 -6.901317757534 LTS-008 chr6 105198268 105219773 21506 * HACE1 0.474 1 NA 0.725748494744189 9 0.0581086147753593 2 2 0 -5.79701288371233 LTS-008 chr6 105219774 121625829 16406056 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-008 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.445225164671745 120 0.068354119438829 0.798003128078378 8861 0.207200532660893 2 1 1 -6.7892214054801 LTS-008 NA NA NA NA LTS-008 chr6 121625830 121625835 6 * TBC1D32 NA 0 NA 0.85 1 NA NA NA NA NA LTS-008 chr6 121625836 127647717 6021882 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3) 0.43248137374754 30 0.0927203743310603 0.857602233662842 1952 0.215815345997623 2 1 1 -7.13802857507595 LTS-008 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.667 1 NA NA NA NA NA LTS-008 chr6 127648124 150140518 22492395 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, NA NA NA NA NA NA NA NA NA LTS-008 PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.445266232446898 238 0.0620376934361007 0.800074715576692 10811 0.216093513261162 2 1 1 -6.80679853996583 LTS-008 NA NA NA NA LTS-008 chr6 150140519 151206915 1066397 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C, LRP11) 0.44038908168582 27 0.059042598943716 0.889682807781658 779 0.253412939856923 2 1 1 -6.89691748135293 LTS-008 chr6 151206916 151208954 2039 * MTHFD1L NA 0 NA 0.676 1 NA NA NA NA NA LTS-008 chr6 151208955 167787427 16578473 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, NA NA NA NA NA NA NA NA NA LTS-008 SNX9, MPC1, PLG, UNC93A, MTRF1L, RMND1, AGPAT4, TULP4, ARID1B, TMEM181, ZBTB2, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, VIP, ARMT1, ZDHHC14, AGPAT4-IT1, CCDC170, MYCT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP, AKAP12) 0.442551781545356 252 0.0723749061993595 0.819685058408638 8826 0.647143658806846 2 1 1 -6.79042719097997 LTS-008 NA NA NA NA LTS-008 chr6 167787428 167789279 1852 * TCP10 NA 0 NA 0.591416364116599 46 0.421566025109436 1 NA NA -5.7644589245476 LTS-008 chr6 167789280 169616061 1826782 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.451426879288195 30 0.0275974553216394 0.887573166178487 871 0.228430944780362 2 1 1 -7.49647938886696 LTS-008 chr6 169616062 169616066 5 * THBS2 NA 0 NA 0.77 1 NA NA NA NA NA LTS-008 chr6 169616067 170891863 1275797 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.458875724258668 25 0.0382849840015638 0.797519902060256 947 0.594838719019802 2 1 1 -7.18304320280521 LTS-008 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.735666893808819 21 0.170864120338495 2 NA NA -5.76463292187568 LTS-008 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.497 1 NA 1.20422891259661 125 0.196531798953757 4 4 0 -5.77842004389939 LTS-008 chr7 331087 5926027 5594941 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, NA NA NA NA NA NA NA NA NA LTS-008 MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.447333357895701 172 0.0745656033688882 1.22158502922998 5274 0.312642432627377 4 2 2 -6.93773618423133 LTS-008 NA NA NA NA LTS-008 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.709 1 NA NA NA NA NA LTS-008 chr7 5937950 5958596 20647 * CCZ1 NA 0 NA 0.731688705349647 47 0.135089582091437 2 NA NA -5.76924938515986 LTS-008 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.688 1 NA NA NA NA NA LTS-008 chr7 5959444 6845594 886151 * c(ANKRD61, KDELR2, DAGLB, CCZ1B, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, CCZ1, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.435180291397036 45 0.0825995695442106 1.16019031041956 1445 0.365624757315104 4 2 2 -6.7982044760287 LTS-008 chr7 6845595 6845639 45 * CCZ1B NA 0 NA 2.283 1 NA NA NA NA NA LTS-008 chr7 6845640 6866001 20362 * CCZ1B 0.391232907245473 2 0.119501046020527 1.85946835052526 40 0.757841394677791 8 5 3 -6.73575220660172 LTS-008 chr7 6866002 6866015 14 * character(0) NA 0 NA 0.869 1 NA NA NA NA NA LTS-008 chr7 6866016 30876374 24010359 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, THSD7A, DKFZP586I1420, NA NA NA NA NA NA NA NA NA LTS-008 MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.44039729494929 210 0.0808471324716616 1.19580763984045 9851 0.393292170623293 4 2 2 -7.40190248866075 LTS-008 NA NA NA NA LTS-008 chr7 30876375 32209424 1333050 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.45363043566179 30 0.0354689600416587 1.36424568234075 982 0.332945906094869 4 2 2 -7.12806379743288 LTS-008 chr7 32209425 38284808 6075384 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, TBX20, RP9, HERPUD2, SFRP4, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7) 0.445557618029784 65 0.0432738651364326 1.18276400851326 2458 0.453178407250431 4 2 2 -7.04146916639467 LTS-008 chr7 38284809 38309169 24361 * TARP NA 0 NA 1.06783587060366 38 0.319683832073709 3 NA NA -5.76444644705144 LTS-008 chr7 38309170 38313075 3906 * TARP NA 0 NA 1.831 1 NA NA NA NA NA LTS-008 chr7 38313076 38393712 80637 * c(TRG-AS1, TARP) 0.018 1 NA 1.68006933290787 57 0.996221207481345 5 5 0 -5.76467579624628 LTS-008 chr7 38393713 38398511 4799 * TRG-AS1 NA 0 NA 1.46188534328274 13 0.364050961493171 5 NA NA -5.76450271387163 LTS-008 chr7 38398512 38402481 3970 * TRG-AS1 NA 0 NA 1.2 1 NA NA NA NA NA LTS-008 chr7 38402482 38764158 361677 * c(TRG-AS1, VPS41, AMPH, FAM183BP) 0.372333895835662 12 0.209239948529448 1.21359252462659 262 0.414717379441961 3 2 1 -6.75913876173241 LTS-008 chr7 38764159 38764586 428 * VPS41 0.468 1 NA 1.36720448684292 3 0.0753746199548185 4 4 0 -5.7645055706883 LTS-008 chr7 38764587 57532487 18767901 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HPVC1, NA NA NA NA NA NA NA NA NA LTS-008 HUS1, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, C7orf69, VOPP1, CAMK2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.44085079365639 203 0.0883017228838374 1.22003462655751 8633 0.487749352989337 4 2 2 -6.96425777997485 LTS-008 NA NA NA NA LTS-008 chr7 57532488 57533232 745 * ZNF716 NA 0 NA 1.55907507107693 13 0.525391990412629 5 NA NA -5.76441013601924 LTS-008 chr7 62758725 63355397 596673 * ZNF733P 0.267 1 NA 1.26324376767095 32 0.591454889310004 4 4 0 -5.76552990469474 LTS-008 chr7 63355398 64643785 1288388 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.449557408935429 22 0.0397479069121395 1.0725028128271 594 0.262938928049303 4 2 2 -7.36798752707483 LTS-008 chr7 64643786 64643856 71 * character(0) NA 0 NA 0.832 1 NA NA NA NA NA LTS-008 chr7 64643857 65160072 516216 * c(ZNF92, LOC441242, INTS4P2) 0.449822384596691 2 0.0134350288425445 0.656419858021885 97 0.222044711605321 2 1 1 -8.5749983494096 LTS-008 chr7 65160073 74489981 9329909 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GUSB, NA, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, STAG3L2, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, PMS2P5, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NA NA NA NA NA NA NA NA NA LTS-008 NCF1B, SNORA22, STX1A, MIR590, GTF2IRD1P1, EIF4H, CLIP2, LAT2, RCC1L, FZD9, ABHD11, CALN1, GTF2IRD2, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.426768273079687 61 0.121412681974587 1.20947727310005 3655 0.488161777522893 4 2 2 -6.86793022058756 LTS-008 NA NA NA NA LTS-008 chr7 74489982 74524678 34697 * GTF2IRD2B NA 0 NA 0.722 1 NA NA NA NA NA LTS-008 chr7 74524679 75043702 519024 * c(GTF2IP1, TRIM73, GTF2IRD2B, STAG3L1, NCF1C, GATSL2) NA 0 NA 0.869303666375091 67 0.331721620306186 2 NA NA -5.78618160571072 LTS-008 chr7 75043703 75043751 49 * character(0) NA 0 NA 1.213 1 NA NA NA NA NA LTS-008 chr7 75043752 82450475 7406724 * c(POM121C, PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR4651, MIR548AU, MAGI2-AS2, CCL26, SEMA3C, FGL2, DTX2, SSC4D, NSUN5P1, SRRM3, RSBN1L, POMZP3, PCLO, GNAI1, HGF, HIP1, HSPB1, GNAT3, RPL13AP17, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, CACNA2D1, UPK3B, TMEM120A, TMEM60, CD36, MAGI2) 0.420981257400197 76 0.121224155863888 1.19521519069203 3134 0.337541869806757 4 2 2 -7.024053037985 LTS-008 chr7 82450476 86506499 4056024 * c(SEMA3A, KIAA1324L, SEMA3D, PCLO, GRM3, SEMA3E) 0.406832407140578 20 0.147892021421035 1.33419455544926 1032 0.346847282167377 4 2 2 -6.75091070316429 LTS-008 chr7 86506500 100321092 13814593 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-008 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.445921395369013 184 0.0749915042309375 1.18802105461324 12075 0.272708317531991 4 2 2 -7.64100921762608 LTS-008 NA NA NA NA LTS-008 chr7 100321093 100321191 99 * EPO NA 0 NA 1.171 1 NA NA NA NA NA LTS-008 chr7 100321192 100344360 23169 * c(EPO, ZAN) 0 1 NA 0.781538912596095 38 1.31567164940457 2 2 0 -5.76441290044365 LTS-008 chr7 100344361 100345155 795 * ZAN NA 0 NA 1.272 1 NA NA NA NA NA LTS-008 chr7 100345156 100488658 143503 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.465136942638526 35 0.0304104139615186 1.27779045194722 661 2.59770759153245 4 2 2 -7.65161961861187 LTS-008 chr7 100488659 100547299 58641 * ACHE 0.244 1 NA 1.25821539736555 53 0.211347554573937 4 4 0 -5.76549234852653 LTS-008 chr7 100547300 100549499 2200 * character(0) NA 0 NA 1.14567374018292 4 0.287222909949746 3 NA NA -5.76452922676448 LTS-008 chr7 100549500 100549505 6 * character(0) NA 0 NA 3.954 1 NA NA NA NA NA LTS-008 chr7 100549506 100550775 1270 * character(0) 0.356615603641629 34 0.0877027927571152 2.25590827550333 60 0.946723008638084 6 4 2 -6.73316221819056 LTS-008 chr7 100550776 100551147 372 * character(0) 0.286714658802585 8 0.0870934432500108 0.526019179255106 39 0.257152007955764 8 6 2 -6.74319415465036 LTS-008 chr7 100551148 100551183 36 * character(0) NA 0 NA 1.51 1 NA NA NA NA NA LTS-008 chr7 100551184 100553077 1894 * character(0) 0.349783317445453 62 0.0765207551262913 2.09612620112133 105 1.00015885533121 9 6 3 -6.73311543358072 LTS-008 chr7 100553078 100553092 15 * character(0) NA 0 NA 1.355 1 NA NA NA NA NA LTS-008 chr7 100553093 100678610 125518 * c(MUC12, MUC17) 0.365184771626777 36 0.0934017903706585 1.36960566049214 288 0.553176493843143 6 4 2 -6.75634572119714 LTS-008 chr7 100678611 100678740 130 * MUC17 0.496 1 NA 1.32265129747127 5 0.226826585743382 4 4 0 -5.76441038398877 LTS-008 chr7 100678741 128470493 27791753 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, AP1S1, COL26A1, ASZ1, MUC17, ASB15, CUX1, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, NA NA NA NA NA NA NA NA NA LTS-008 LAMB4, FLNC, HYAL4, TSPAN12, CLDN15, POLR2J2, POT1, HYALP1, TES, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, GPR37, GRM8, HILPDA, MDFIC, FSCN3, ST7-OT4, MOGAT3, FAM71F2, IFRD1, DPY19L2P2, IMPDH1, KCND2, NAT16, SLC26A5, LHFPL3, RNF148, ARF5, FEZF1, LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, ORC5, SERPINE1, PNPLA8, PAX4, TAS2R16, FIS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 WNT16, LSM8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, PPP1R3A, RBM28, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, PTPRZ1, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, CCDC136, IFT22, SLC13A1, SPAM1, SRPK2, SYPL1, MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, VGF, WNT2, GCC1, PRKRIP1, ST7, CBLL1, CPED1, ORAI2, CALU, TRIM56, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CAV1, CAV2, WASL, PLOD3, MYL10, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, PMPCB, DOCK4) 0.439195927172192 207 0.0947227522490278 1.19133638730292 13461 0.358602899265279 4 2 2 -7.67743828992702 LTS-008 NA NA NA NA LTS-008 chr7 128470494 128520651 50158 * c(LOC100130705, FLNC, KCP, ATP6V1F) 0 1 NA 1.31041474253379 348 0.291359414723148 4 4 0 -5.76441467690828 LTS-008 chr7 128520652 129414815 894164 * c(SMKR1, RNA5SP244, AHCYL2, TNPO3, TPI1P2, TSPAN33, IRF5, KCP, MIR182, MIR183, MIR96, LOC407835, NRF1, STRIP2, SMO) 0.336984635055893 14 0.216858641353464 1.19960183855202 1000 0.342190408983069 4 3 1 -6.7790471826844 LTS-008 chr7 129414816 129470961 56146 * c(MIR183, UBE2H) 0.483 1 NA 1.0969239783094 13 0.213093244306878 3 3 0 -5.76576944715084 LTS-008 chr7 129470962 142000932 12529971 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, MOXD2P, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, PRSS58, CLEC2L, FMC1, TMEM213, KLHDC10, AKR1B1, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, COPG2, DENND2A, WEE2-AS1, FLJ40288, HIPK2, WDR91, MESTIT1, AGBL3, STRA8, KLRG2, LOC349160, LINC-PINT, FAM180A, RAB19, MIR29A, MIR29B1, MEST, MKLN1, AKR1B15, NA NA NA NA NA NA NA NA NA LTS-008 MIR335, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, EXOC4, NA, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, NA, UBE2H, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TMEM209, TRIM24, MGAM, ADCK2, PLXNA4, DGKI, ZC3HAV1L, MGAM2, CPA5, CEP41) 0.45220838295823 189 0.0667288847628287 1.20058160948153 8955 0.294020337702026 4 2 2 -7.39298916085258 LTS-008 NA NA NA NA LTS-008 chr7 142000933 142008783 7851 * character(0) 0.238 1 NA 1.16517552284713 15 0.31616388155512 3 3 0 -5.76491165018453 LTS-008 chr7 142008784 142045692 36909 * character(0) 0.158214541080767 9 0.0896437393240599 1.26764915862499 60 0.688532536598527 9 8 1 -6.75757534915509 LTS-008 chr7 142045693 142045897 205 * character(0) 0.363 1 NA 1.02255155353762 3 0.467206949149232 3 3 0 -5.76441055559212 LTS-008 chr7 142045898 142605902 560005 * c(MTRNR2L6, PRSS3P2, EPHB6, TRPV6, TRPV5, PRSS1) 0.337478113061381 61 0.122616392792403 1.32557416488833 653 0.601460176921654 4 3 1 -6.77581536532439 LTS-008 chr7 142605903 142749417 143515 * c(OR9A2, C7orf34, KEL, TRPV5) 0.48 1 NA 1.18900700702892 252 0.259734949074914 4 4 0 -5.77558265436253 LTS-008 chr7 142749418 143305591 556174 * c(CLCN1, TMEM139, EPHA1, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, CTAGE15, PIP, ZYX, CASP2, OR6W1P, FAM131B) 0.454973568056444 17 0.115388187538974 1.22571962452761 833 0.279395821954293 4 2 2 -6.79180633416552 LTS-008 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.080190163822057 39 0.221956631549496 0 NA NA -6.05768245754877 LTS-008 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.298 1 NA NA NA NA NA LTS-008 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.420422370049727 17 0.0578004299800819 1.33934239281288 288 0.594383643450939 4 2 2 -6.73640458218767 LTS-008 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.369 1 NA NA NA NA NA LTS-008 chr7 143883365 144072694 189330 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.212748404617465 4 0.117989759442645 0.738090478315155 159 0.59727927241553 2 2 0 -6.78036982021471 LTS-008 chr7 144072695 144074199 1505 * ARHGEF5 NA 0 NA 0.988 1 NA NA NA NA NA LTS-008 chr7 144074200 158476106 14401907 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, NA NA NA NA NA NA NA NA NA LTS-008 GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.442520898242143 274 0.0846117159902889 1.20112858047386 9088 0.32997106474163 4 2 2 -7.26817078145683 LTS-008 NA NA NA NA LTS-008 chr7 158476107 159025951 549845 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) NA 0 NA 1.16523234177652 519 0.221550356377388 3 NA NA -5.83517993975211 LTS-008 chr8 182757 196884 14128 * ZNF596 0.231 1 NA 0.488838894505637 57 0.120673278318983 1 1 0 -5.77047508800671 LTS-008 chr8 196885 7305471 7108587 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.24503383384842 100 0.0721784342005032 0.576932115192446 2273 0.174257225482097 1 1 0 -7.29733282878379 LTS-008 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.35 1 NA NA NA NA NA LTS-008 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.292115926810572 6 0.161189846661217 0.359743192297985 100 0.3994485395612 1 1 0 -7.01718187589241 LTS-008 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.521 1 NA NA NA NA NA LTS-008 chr8 8175295 22105568 13930274 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, LPL, MIR124-1, MIR320A, NA NA NA NA NA NA NA NA NA LTS-008 ASAH1, MSR1, MSRA, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, SFTPC, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MFHAS1, RP1L1, PHYHIP) 0.24496870358337 240 0.0699741090791629 0.568872158570325 7182 0.572737214458017 1 1 0 -6.84248366603482 LTS-008 NA NA NA NA LTS-008 chr8 22105569 39142479 17036911 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, NKX2-6, UNC5D, LETM2, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, RHOBTB2, DDHD2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADGRA2, LSM1, NA NA NA NA NA NA NA NA NA LTS-008 ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, C8orf86, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, PLEKHA2, LINC00589, MBOAT4, PDLIM2, EBF2, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RNF122, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, ASH2L, CHMP7, BAG4, ENTPD4) 0.250867432457991 230 0.0603066091602808 0.541951715161598 11660 0.151173477551305 1 1 0 -6.76521827456392 LTS-008 NA NA NA NA LTS-008 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.119 1 NA NA NA NA NA LTS-008 chr8 39311551 39349421 37871 * ADAM3A NA 0 NA 0.249348516287568 51 0.13150867860723 0 NA NA -5.78980393367263 LTS-008 chr8 39349422 39349437 16 * ADAM3A NA 0 NA 0.376 1 NA NA NA NA NA LTS-008 chr8 39349438 43047593 3698156 * c(LOC100130964, MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, ADAM3A, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.232055581728572 23 0.0630302016822941 0.549085608681075 2781 0.148858230617318 1 1 0 -6.91030088792604 LTS-008 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 0.623750050586569 143 0.16030348999249 1 NA NA -5.84041838900009 LTS-008 chr8 47752736 47757610 4875 * LINC00293 0.389 1 NA 1.22487400376866 19 0.250031401536659 4 4 0 -5.76460129220296 LTS-008 chr8 47757611 69136865 21379255 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LOC100287846, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, CEBPD, ARFGEF1, COPS5, XKR4, PCMTD1, TMEM68, ADHFE1, UBXN2B, PXDNL, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SPIDR, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, FAM150A, LOC401463, LYN, NA NA NA NA NA NA NA NA NA LTS-008 MIR124-2, MCM4, MOS, ASPH, MYBL1, C8orf22, LINC00293, OPRK1, PDE7A, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, ARMC1, LINC00251, CHD7, PRKDC, C8orf44, CPA6, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, SNAI2, TCEA1, TTPA, UBE2V2, CA8, CHCHD7, EFCAB1, CSPP1, VCPIP1, PREX2, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, ST18, TOX, RB1CC1) 0.32943357792999 133 0.0947013972261839 1.11631174758564 7976 0.311226686716837 3 2 1 -7.31606438222036 LTS-008 NA NA NA NA LTS-008 chr8 69136866 69136869 4 * PREX2 NA 0 NA 1.448 1 NA NA NA NA NA LTS-008 chr8 69136870 69703102 566233 * c(C8orf34, C8orf34-AS1, PREX2) 0.337807549102984 33 0.0727762500803495 1.27492191221296 375 0.332691864196643 4 3 1 -6.85645425811929 LTS-008 chr8 69703103 100887978 31184876 * c(MIR875, C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC01592, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, NCOA2, POP1, WWP1, STMN2, SLC26A7, OSR2, C8orf34, FAM92A1, NDUFAF6, DCAF4L2, RALYL, RDH10, C8orf37, VPS13B, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, ERICH5, NA NA NA NA NA NA NA NA NA LTS-008 EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, SNORA72, STAU2, TRIQK, DPY19L4, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, UBE2W, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PKIA, PAG1, JPH1, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, SLCO5A1, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, TP53INP1, PTDSS1) 0.346170097955161 208 0.0763320018577922 1.13176388790181 11663 0.380971899748252 3 2 1 -7.45284713827482 LTS-008 NA NA NA NA LTS-008 chr8 100887979 100888047 69 * VPS13B NA 0 NA 0.955 1 NA NA NA NA NA LTS-008 chr8 100888048 103662219 2774172 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.353723542670523 26 0.0685588910241519 1.03321529715766 1624 0.23477182660276 3 2 1 -6.799231188267 LTS-008 chr8 103662220 103819681 157462 * KLF10 0.494 1 NA 1.1207746699154 69 0.47971322599928 3 3 0 -5.76610812833766 LTS-008 chr8 103819682 104053252 233571 * c(AZIN1, ATP6V1C1) NA 0 NA 1.1360684538125 111 0.187585557875177 3 NA NA -5.78846545323993 LTS-008 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.294 1 NA NA NA NA NA LTS-008 chr8 104054528 120743636 16689109 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TAF2, TRHR, TRPS1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.438273901807006 96 0.0674998115656889 1.40319804701754 4663 1.72011724436662 4 2 2 -6.77562702034117 LTS-008 chr8 120743637 135545251 14801615 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, LRRC6, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, WDYHV1, GSDMC, ZFAT, PVT1, NA NA NA NA NA NA NA NA NA LTS-008 HAS2-AS1, DEPTOR, ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TAF2, TG, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.427781084229036 134 0.0992773914286803 1.32177352633626 5815 0.306638193224138 4 2 2 -6.74775939386622 LTS-008 NA NA NA NA LTS-008 chr8 135545252 135577262 32011 * ZFAT NA 0 NA 1.762 1 NA NA NA NA NA LTS-008 chr8 135577263 141407906 5830644 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, TRAPPC9) 0.42984843400284 30 0.109492712191216 1.47985474648567 993 0.409821772814111 5 3 2 -6.82045963101201 LTS-008 chr8 141407907 141415668 7762 * TRAPPC9 NA 0 NA 1.193 1 NA NA NA NA NA LTS-008 chr8 141415669 142185738 770070 * c(DENND3, AGO2, CHRAC1, PTK2, TRAPPC9) 0.442774023731086 19 0.0297216128264576 1.27218702332057 642 0.288264548096367 4 2 2 -6.95691136100991 LTS-008 chr8 142185739 142186637 899 * DENND3 NA 0 NA 1.901 1 NA NA NA NA NA LTS-008 chr8 142186638 145618372 3431735 * c(MIR937, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR4472-1, MIR4664, PTP4A3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GRINA, HSF1, GPIHBP1, NRBP2, WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLURP1, NA NA NA NA NA NA NA NA NA LTS-008 SLC45A4, ADGRB1, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, LY6D, JRK, DGAT1, GPAA1, NAPRT, ZNF623) 0.44564180636841 169 0.0576081437372536 1.3933599563033 5382 0.406841916289954 4 2 2 -6.86527365614914 LTS-008 NA NA NA NA LTS-008 chr8 145618373 145741765 123393 * c(MIR939, MIR1234, MFSD3, ADCK5, GPT, CPSF1, TONSL, CYHR1, VPS28, SLC39A4, PPP1R16A, FOXH1, KIFC2, RECQL4) 0.428888577508293 24 0.0516563161675317 1.31389150579067 1018 0.221625296291535 4 2 2 -6.73754163506228 LTS-008 chr8 145741766 145742879 1114 * RECQL4 0.35 1 NA 1.11154088092221 21 0.276021971175174 3 3 0 -5.76443766873443 LTS-008 chr8 145742880 146072356 329477 * c(COMMD5, ZNF517, C8orf82, LRRC24, RPL8, ZNF7, ARHGAP39, ZNF34, ZNF251, RECQL4, LRRC14) 0.308118454375212 9 0.180990638186374 1.3222996437002 673 0.287607012146047 4 3 1 -6.73362370016953 LTS-008 chr8 146072357 146102910 30554 * c(COMMD5, ZNF250, ZNF7) 0.447 1 NA 1.23513825269531 47 0.29563473631713 4 4 0 -5.76505802891774 LTS-008 chr8 146102911 146231140 128230 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, ZNF16) 0.477445264096492 19 0.027367864366808 1.30712272141777 390 0.244471417491032 4 2 2 -8.41241490944201 LTS-008 chr8 146231141 146280905 49765 * c(ZNF252P-AS1, C8orf33) NA 0 NA 1.09065345391849 55 0.204640956829568 3 NA NA -5.76539013850599 LTS-008 chr9 14732 334337 319606 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0.436 1 NA 0.716997899354972 123 0.23713019597132 2 2 0 -5.80159849944427 LTS-008 chr9 334338 5732483 5398146 * c(RCL1, DMRT2, INSL6, KCNV2, GLIS3, DMRT1, KANK1, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, PDCD1LG2, DOCK8, GLIS3-AS1, PUM3) 0.452092474232904 48 0.0438372028602411 0.796703753195711 2488 0.219720312505335 2 1 1 -6.96283431220407 LTS-008 chr9 5732484 5754856 22373 * RIC1 0 1 NA 0.76891174855438 31 0.336230047975029 2 2 0 -5.76455431418062 LTS-008 chr9 5754857 6254568 499712 * c(MIR4665, KIAA2026, MLANA, RANBP6, RIC1, ERMP1, IL33) 0.392237360120172 10 0.181827268459809 0.775349439034418 604 0.144000834933688 2 1 1 -6.761930710833 LTS-008 chr9 6254569 6256292 1724 * IL33 0.461 1 NA 1.11820358066141 7 0.191238818534014 3 3 0 -5.76451887558549 LTS-008 chr9 6256293 8449852 2193560 * c(UHRF2, KDM4C, GLDC, PTPRD, TPD52L3, IL33, TMEM261) 0.452274546899334 12 0.0291405944075313 0.796678898199952 796 0.213389179397522 2 1 1 -7.23598239854201 LTS-008 chr9 8449853 14102588 5652736 * c(LINC00583, LURAP1L, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.449369250140934 11 0.0295277989205242 0.888907274089603 710 0.214886631615485 2 1 1 -7.91347502610297 LTS-008 chr9 14102589 14112997 10409 * NFIB NA 0 NA 0.676 1 NA NA NA NA NA LTS-008 chr9 14112998 36378853 22265856 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, GNE, MIR3152, LOC100506422, MIR4667, MIR4473, MIR4474, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, RRAGA, CCL27, PSIP1, PTENP1, DCTN3, CLTA, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, LINC00961, ATP8B5P, ELAVL2, C9orf72, CCDC171, FAM219A, CCDC107, FANCG, PHF24, NA NA NA NA NA NA NA NA NA LTS-008 DDX58, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, B4GALT1, DNAI1, SIT1, SPINK4, TUSC1, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, ENHO, LOC389705, FAM205BP, FAM221B, OR13J1, HACD4, LINC01242, TMEM215, MIR31, CNTFR-AS1, MLLT3, LINC01239, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, NPR2, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, GBA2, RMRP, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, HRCT1, LRRC19, NOL6, SNAPC3, SCARNA8, MSMP, TEK, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, MOB3B, CAAP1, IFT74, FAM214B, RECK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HINT2, C9orf24, PIGO, ARHGEF39, CCIN, ADAMTSL1, LINC00950, CER1, PLAA, CD72, RGP1, RUSC2) 0.446650651423274 283 0.0655922469231451 0.813794070896349 11890 0.198747031100908 2 1 1 -6.95882414670089 LTS-008 NA NA NA NA LTS-008 chr9 36378854 36834475 455622 * c(MIR4475, RNF38, MELK) 0 1 NA 0.809291580155818 131 0.339401682111797 2 2 0 -5.76504338566408 LTS-008 chr9 36834476 38068532 1234057 * c(EBLN3P, MIR4540, MIR4476, TRMT10B, FRMPD1, FBXO10, TOMM5, PAX5, EXOSC3, POLR1E, SHB, DCAF10, ZCCHC7, SLC25A51, GRHPR, ZBTB5) 0.260964868543905 9 0.235193005848388 0.819299322618193 1089 0.428976023849866 2 2 0 -6.80638003592555 LTS-008 chr9 38068533 38395928 327396 * c(ALDH1B1, SHB) 0.442 1 NA 0.82961099956846 23 0.147571929269426 2 2 0 -5.77963344392309 LTS-008 chr9 38395929 40499019 2103091 * c(FAM95C, FAM201A, ALDH1B1, ANKRD18A, IGFBPL1, FAM74A1, ZNF658B, NA, NA, CNTNAP3) 0.423276270814898 8 0.0749341377477582 0.77656112301051 350 0.18446786938169 2 1 1 -6.75616515789889 LTS-008 chr9 40499020 40499498 479 * c(ZNF658B, NA) 0.353 1 NA 0.584116437509987 9 0.121846670496617 1 1 0 -5.76452153344823 LTS-008 chr9 40499499 44175697 3676199 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.557483297339605 61 0.238556319317554 1 NA NA -5.79743756117128 LTS-008 chr9 65602571 66457127 854557 * LOC286297 0.448 1 NA 0.956381628175073 4 0.241614534606951 3 3 0 -5.84151064151511 LTS-008 chr9 66457128 70862966 4405839 * c(FRG1HP, FAM27B, LOC100133920, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.327095478281999 27 0.0730633725628403 0.922626574529325 77 0.438792644608369 3 2 1 -7.20514999877863 LTS-008 chr9 70862967 71145379 282413 * c(FOXD4L3, PGM5, PGM5-AS1) 0.45 1 NA 0.762681495162091 67 0.172078763533853 2 2 0 -5.77496379693487 LTS-008 chr9 71145380 103349484 32204105 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SEC61B, SLC35D2, FAM122A, CKS2, TMC1, COL15A1, CARNMT1, C9orf57, C9orf85, NA NA NA NA NA NA NA NA NA LTS-008 C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, INVS, GNAQ, C9orf47, SPATA31E1, LOC286238, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LOC286359, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, NANS, NUTM2F, DIRAS2, ASPN, TEX10, AUH, NMRK1, STX17, NOL8, C9orf40, RFK, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, KLF9, TGFBR1, TLE1, TLE4, TMOD1, CORO2A, XPA, ZFAND5, SECISBP2, ZCCHC6, GALNT12, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, ZNF484, PIP5K1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.437640314802496 351 0.0905667932831015 0.793478644390845 17208 0.456215643590836 2 1 1 -6.74682640746099 LTS-008 NA NA NA NA LTS-008 chr9 103349485 114090395 10740911 * c(MIR548Q, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, IKBKAP, CTNNAL1, NA NA NA NA NA NA NA NA NA LTS-008 KLF4) 0.434603664168336 89 0.083547331120048 0.824182193855429 5078 0.65264833976208 2 1 1 -6.75992754298393 LTS-008 NA NA NA NA LTS-008 chr9 114090396 115478795 1388400 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, INIP, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.451155368102381 22 0.0370182182830088 0.753690911057093 1538 0.160720579175695 2 1 1 -7.12582631623139 LTS-008 chr9 115478796 115478863 68 * INIP NA 0 NA 0.797 1 NA NA NA NA NA LTS-008 chr9 115478864 117074810 1595947 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.425487415182888 67 0.111434442641332 0.824545304083973 2251 0.298275281240305 2 1 1 -6.74624557436242 LTS-008 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.206 1 NA NA NA NA NA LTS-008 chr9 117085363 117092751 7389 * c(ORM1, ORM2) 0.381 1 NA 0.291216525648841 67 0.292317231939288 0 0 0 -5.76442324139988 LTS-008 chr9 117092752 130629139 13536388 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100288842, MIR181A2HG, SH2D3C, MIR3911, LOC100505478, MIR3960, MIR4478, RABEPK, CDK9, ZBTB6, NEK6, CNTRL, RPL35, PTRH1, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, TTC16, BRINP1, OLFML2A, MEGF9, ENG, AK1, TMEM268, STOM, TRIM32, ZBTB43, ASTN2, ANGPTL2, FPGS, RABGAP1, NR5A1, PSMD5-AS1, MORN5, OR1L4, WHRN, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, NA NA NA NA NA NA NA NA NA LTS-008 OR1J2, SNORA65, GGTA1P, TOR2A, GOLGA1, GPR21, CRB2, SCAI, CFAP157, GSN, SLC2A8, HSPA5, TNC, ADGRD2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, NDUFA8, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, RAB14, RC3H2, STRBP, PPP6C, CDK5RAP2, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, LINC00474, RPL12, NRON, FAM129B, STXBP1, SNORD90, MIR601, TLR4, TRAF1, C5, ZNF79, MAPKAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 AKNA, MIR600HG, ARPC5L, GARNL3, MVB12B, LRSAM1, MRRF, RBM18, LHX2, TNFSF8, ATP6V1G1, RALGPS1, TNFSF15) 0.451090753071839 170 0.0626653077355848 0.803849304137339 9651 0.205957906907717 2 1 1 -6.85721390853215 LTS-008 NA NA NA NA LTS-008 chr9 130629140 130630233 1094 * AK1 0.481 1 NA 0.862411219796245 17 0.154019694118871 2 2 0 -5.76458665610871 LTS-008 chr9 130630234 131071503 441270 * c(SLC25A25-AS1, MIR3154, MIR4672, SLC25A25, PIP5KL1, DNM1, AK1, NAIF1, CIZ1, TRUB2, ST6GALNAC4, GOLGA2, ST6GALNAC6, SWI5, PTGES2-AS1, LCN2, FAM102A, MIR199B, C9orf16, PTGES2, DPM2) 0.270568718003707 9 0.239429240300994 0.794107232165533 1087 0.204714390700783 2 2 0 -6.81748349542563 LTS-008 chr9 131071504 131095112 23609 * c(TRUB2, COQ4) 0.496 1 NA 0.858702711407799 87 0.176487435120501 2 2 0 -5.76700810020437 LTS-008 chr9 131095113 138454301 7359189 * c(RNU6ATAC, LOC100272217, MIR3689A, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR219B, MIR3689D2, MIR3689E, LOC101448202, LAMC3, OLFM1, ZER1, CEL, CELP, POMT1, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, C9orf116, CRAT, DBH-AS1, ASB6, C9orf62, AK8, DBH, STKLD1, SARDH, TOR1A, ENDOG, FCN1, FCN2, DOLK, FNBP1, SETX, EXOSC2, NCS1, NUP188, ABL1, NA NA NA NA NA NA NA NA NA LTS-008 PHYHD1, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, GLE1, TOR1B, ABO, FAM78A, RAPGEF1, NTMT1, PKN3, OBP2B, OBP2A, QRFP, C9orf50, IER5L, CFAP77, TMEM8C, LCN1, LOC401557, MIR219A2, C9orf106, ASS1, ODF2, PAEP, MRPS2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, BARHL1, SH3GLB2, REXO4, DOLPP1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, SET, FAM163B, DDX31, SPTAN1, SURF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SURF2, SURF4, MED22, SURF6, TSC1, TTF1, VAV2, BRD3, NUP214, URM1, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, KYAT1, FUBP3, WDR34, GTF3C5, GTF3C4, MED27, PTGES, ADAMTSL2, PPP1R26) 0.445019829844218 244 0.0557749759212292 0.818453188128181 10416 0.253879814848436 2 1 1 -6.86536141874042 LTS-008 NA NA NA NA LTS-008 chr9 138454302 138515502 61201 * c(LINC01502, GLT6D1, PAEP) 0 1 NA 0.85791062822831 31 0.6001647426162 2 2 0 -5.76497858304052 LTS-008 chr9 138515503 139091460 575958 * c(UBAC1, NACC2, CAMSAP1, GLT6D1, LCN9, SOHLH1, KCNT1, LHX3, C9orf69) 0.383066052232695 9 0.204146665686979 0.839689998701545 839 2.09208922488118 3 2 1 -6.73793043498067 LTS-008 chr9 139091461 139094805 3345 * LHX3 0.395 1 NA 0.789295783020733 21 0.146355552060889 2 2 0 -5.76441719532062 LTS-008 chr9 139094806 140997130 1902325 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, LCN8, FAM69B, SLC34A3, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, MIR126, LCN10, STPG3, NA NA NA NA NA NA NA NA NA LTS-008 NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.44502872690715 169 0.0578128283271845 0.806537486301434 5614 0.489680799046819 2 1 1 -6.80899672769562 LTS-008 NA NA NA NA LTS-008 chr9 140997131 141071759 74629 * c(TUBBP5, CACNA1B) NA 0 NA 0.760948494851783 113 0.191769281514247 2 NA NA -5.76690298573523 LTS-008 chr10 94832 94870 39 * TUBB8 0.5 1 NA 0.614 1 NA NA NA NA NA LTS-008 chr10 94871 17813397 17718527 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, TUBB8, IL2RA, NA NA NA NA NA NA NA NA NA LTS-008 IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.322430339665037 253 0.0582268515381018 1.09170050524447 8813 0.314199385009978 3 2 1 -7.33867185332509 LTS-008 NA NA NA NA LTS-008 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.082 1 NA NA NA NA NA LTS-008 chr10 17842448 18085992 243545 * c(MRC1, NA, TMEM236) NA 0 NA 0.481737595185688 78 0.46521715341709 1 NA NA -5.77360083754147 LTS-008 chr10 18085993 26443766 8357774 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, NA, GPR158, ARHGAP21, DNAJC1, BMI1, TMEM236, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.323625074989078 71 0.063193650191671 1.13669309903874 3374 0.320682802649754 3 2 1 -7.39190145293131 LTS-008 chr10 26443767 26446247 2481 * MYO3A NA 0 NA 0.99 1 NA NA NA NA NA LTS-008 chr10 26446248 38671982 12225735 * c(ABI1, MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, ZNF248, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CCDC7, EPC1, NA NA NA NA NA NA NA NA NA LTS-008 FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.329740735335077 151 0.0695579711217799 1.08171142824387 5053 0.482565075381967 3 2 1 -7.00340145900902 LTS-008 NA NA NA NA LTS-008 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 0.963025074429525 9 0.182449993148808 3 NA NA -5.77380790694897 LTS-008 chr10 42379869 46281287 3901419 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.144287481115223 57 0.0423964978810922 0.930195229239168 1791 0.259009248294562 3 3 0 -7.23269106558847 LTS-008 chr10 46281288 46550852 269565 * c(AGAP4, FAM21C, PTPN20, NA) NA 0 NA 1.598 1 NA NA NA NA NA LTS-008 chr10 46550853 46960483 409631 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15) 0.243 1 NA 1.65244501482091 25 1.09921979906962 5 5 0 -5.76507660334626 LTS-008 chr10 46960484 46965018 4535 * c(PTPN20, GLUD1P7, NA, NA, SYT15) 0.268 1 NA 1.74961933959923 43 0.276846913892867 6 6 0 -5.76445831945717 LTS-008 chr10 46965019 47678021 713003 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.376113880240572 37 0.0716152759385018 1.92243204999639 204 0.591959624178857 6 4 2 -6.77643287489332 LTS-008 chr10 47678022 47933977 255956 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 2.01779471264782 57 0.636506265633321 7 NA NA -5.76465804535401 LTS-008 chr10 47933978 47941927 7950 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.861 1 NA NA NA NA NA LTS-008 chr10 47941928 48055065 113138 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.329470963403617 39 0.490587803265176 0 NA NA -5.76987941406805 LTS-008 chr10 48055066 48370391 315326 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.035 1 NA NA NA NA NA LTS-008 chr10 48370392 48370595 204 * c(ZNF488, PTPN20, GLUD1P7, NA, NA, NA) 0.154 1 NA 1.23370450784484 5 0.903165931598397 4 4 0 -5.76441061541631 LTS-008 chr10 48370596 48438836 68241 * c(ZNF488, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.124918998732747 2 0.0282842712474619 1.07878605909865 260 0.321909554650233 3 3 0 -6.83207018137722 LTS-008 chr10 48438837 48438907 71 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) 0.086 1 NA 0.055 1 NA NA NA NA NA LTS-008 chr10 48438908 49364771 925864 * c(FRMPD2, PTPN20, GDF10, NA, GLUD1P7, NA, NA, NA, FRMPD2B) 0.07 1 NA 0.455511620318394 42 0.429383324651722 1 1 0 -5.85299573695172 LTS-008 chr10 49364772 49367164 2393 * c(FRMPD2, NA, FRMPD2B) NA 0 NA 1.965 1 NA NA NA NA NA LTS-008 chr10 49367165 51050191 1683027 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, DRGX, SLC18A3, FRMPD2B, PARG) 0.140276369129122 52 0.0316084166960824 0.966789347673551 1928 0.269643593475887 3 3 0 -6.83687540713575 LTS-008 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.4566325044523 41 0.35142010506501 1 NA NA -5.81211114265287 LTS-008 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.846 1 NA NA NA NA NA LTS-008 chr10 51537127 51589453 52327 * c(MSMB, NA, NCOA4, PARG) 0.103209657896651 3 0.0762692598626734 0.929736607159985 121 0.258605946179606 4 4 0 -6.79128120153738 LTS-008 chr10 51589454 51620317 30864 * c(TIMM23, NA, NCOA4, PARG) 0.451 1 NA 1.02439527703665 41 0.277820941632837 3 3 0 -5.76456732761507 LTS-008 chr10 51620318 52088004 467687 * c(TIMM23, SGMS1, NA, FAM21A, AGAP6, NA, ASAH2, PARG) 0.452630454439582 9 0.0654331720154235 0.985528558188011 157 0.750667661607916 2 1 1 -6.86498917162399 LTS-008 chr10 52088005 52514778 426774 * c(SGMS1, ASAH2B) 0.11 1 NA 0.837413955096414 45 0.304046868064445 2 2 0 -5.77146450805767 LTS-008 chr10 52514779 63172648 10657870 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, PCDH15, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.147543771039714 55 0.0368929838301574 0.982498667965893 2773 0.29043878440362 3 3 0 -7.11201448390262 LTS-008 chr10 63172649 71174736 8002088 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.136881866966498 47 0.0522743332855048 0.890939453413719 3719 0.240214535400951 2 2 0 -8.01984879802177 LTS-008 chr10 71174737 82005779 10831043 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, EIF5AL1, USP54, FUT11, OIT3, EIF4EBP2, TMEM254-AS1, PLAC9, ZCCHC24, UNC5B, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, ANXA7, ANXA11, FAM149B1, DUPD1, KCNMA1, C10orf105, C10orf55, NA NA NA NA NA NA NA NA NA LTS-008 LINC00595, DNAJC9-AS1, LINC00857, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, NPFFR1, C10orf54, LOC642361, SFTPD, BEND3P3, SFTPA1, TACR2, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, CAMK2G, C10orf11, PLA2G12B, ZNF503, AIFM2, NDST2, MBL1P, SGPL1, MCU, DLG5, CHST3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SEC24C, SPOCK2) 0.139366759753798 173 0.0507146567386527 0.938767110735942 8269 0.247828643467093 3 3 0 -7.84852882826303 LTS-008 NA NA NA NA LTS-008 chr10 82005780 82009627 3848 * character(0) NA 0 NA 0.352483505460653 39 0.358844152113522 0 NA NA -5.76517686223304 LTS-008 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.227 1 NA NA NA NA NA LTS-008 chr10 82012432 117228907 35216476 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, FAS-AS1, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4679-1, MIR4483, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, SMNDC1, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, NA NA NA NA NA NA NA NA NA LTS-008 LDB3, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, CFL1P1, TRUB1, VTI1A, DYDC1, HECTD2, FGFBP3, ADRA2A, ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, LINC00858, DNTT, DUSP5, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, WAPL, PPRC1, RRP12, TBC1D12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 DNMBP, FRAT2, IFIT5, CALHM1, DPCD, SEC31B, ATRNL1, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, GHITM, PDCD4, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, RBM20, PDCD4-AS1, FLJ37201, GRID1, BLNK, HABP2, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, VWA2, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, NHLRC2, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, GUCY2GP, ABLIM1, LIPA, LBX1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 GOLGA7B, ARL3, MIR107, C10orf62, MAT1A, LINC00863, IFIT1B, MIR346, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, ACSL5, PGAM1, PITX3, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CCDC186, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, AS3MT, MIR146B, STAMBPL1, GPAM, FAM160B1, SEMA4G, ALDH18A1, ACTA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RBP4, RGR, AVPI1, HPSE2, SCD, MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, ZDHHC6, RPL13AP6, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, SHOC2, TRIM8, TSPAN14, KAZALD1, SFXN3, SLC25A28, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ELOVL3, MARVELD1, CASP7, PCGF6, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, AFAP1L2, PYROXD2, USMG5, ATAD1, ARHGAP19, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, SMC3, NEURL1, LGI1, NOLC1, CDHR1, BBIP1, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A, DCLRE1A) 0.141094398024997 448 0.0497143320988573 0.929890807869653 24767 0.255380451826597 3 3 0 -9.62496955433405 LTS-008 NA NA NA NA LTS-008 chr10 117228908 117278717 49810 * ATRNL1 NA 0 NA 1.214 1 NA NA NA NA NA LTS-008 chr10 117278718 119308575 2029858 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.146567192868351 30 0.0313248643482583 1.01194608834052 1437 0.268119318804258 3 3 0 -6.81863227129815 LTS-008 chr10 119308576 122216951 2908376 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.135467988793697 32 0.0548327368663836 0.89464607352057 1635 0.200410281053422 2 2 0 -7.64601587828369 LTS-008 chr10 122216952 122263014 46063 * PLPP4 NA 0 NA 1.006 1 NA NA NA NA NA LTS-008 chr10 122263015 126675645 4412631 * c(MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, CPXM2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.15669808923251 44 0.0467837169682094 0.963159613349988 2956 0.273522953533497 3 3 0 -7.10083851448488 LTS-008 chr10 126675646 126677481 1836 * c(CTBP2, ZRANB1) 0.444 1 NA 0.791079069111044 33 0.352941892054013 2 2 0 -5.76441049954483 LTS-008 chr10 126677482 127585237 907756 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS, FANK1) 0.248539365670042 26 0.128399089380907 0.928871176948846 643 0.251599049384025 2 2 0 -7.09647371235132 LTS-008 chr10 127585238 127668431 83194 * c(FANK1-AS1, FANK1) 0.089 1 NA 1.08805259113327 7 0.495528914153256 3 3 0 -5.76465475147642 LTS-008 chr10 127668432 134693137 7024706 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2, FANK1) 0.143200466557302 56 0.0616595491387993 0.978578879604764 2741 0.294366933237838 3 3 0 -6.97808303901115 LTS-008 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.469 1 NA NA NA NA NA LTS-008 chr10 134694406 134756359 61954 * CFAP46 0.0951168305709419 9 0.042395295860639 0.551430370271355 174 0.420841991995921 5 5 0 -6.95528417437932 LTS-008 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.346 1 NA NA NA NA NA LTS-008 chr10 134884462 135237196 352735 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.146066939449446 31 0.0614488160117615 0.975960211743535 1095 0.247632479339823 3 3 0 -6.76642556023317 LTS-008 chr10 135237197 135269788 32592 * c(SPRN, SCART1) 0.174 1 NA 0.815665234482563 13 0.244549795673811 2 2 0 -5.76460131449728 LTS-008 chr10 135269789 135381888 112100 * c(CYP2E1, SPRNP1, SCART1, SYCE1) 0.108022673637136 3 0.0971202004391122 0.957594637983513 258 0.277361165158762 3 3 0 -6.79169839586928 LTS-008 chr10 135381889 135437421 55533 * c(SPRNP1, SYCE1) NA 0 NA 0.465 1 NA NA NA NA NA LTS-008 chr10 135437422 135473026 35605 * FRG2B 0.372768479025626 6 0.0416865285993769 0.776296471553431 41 0.683854999963888 3 2 1 -6.73900295518107 LTS-008 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.327 1 NA NA NA NA NA LTS-008 chr11 193025 193112 88 * SCGB1C1 0.422 1 NA 0.542 1 NA NA NA NA NA LTS-008 chr11 193113 791779 598667 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.361675679605629 90 0.0587390056650336 1.0448541902323 2219 0.528896653107755 3 2 1 -6.76398333322166 LTS-008 chr11 791780 842543 50764 * c(CRACR2B, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, SLC25A22, CD151) 0.386981703686048 14 0.0550424411674331 1.0977426475755 376 0.27782812431353 3 2 1 -6.76187702989879 LTS-008 chr11 842544 866499 23956 * TSPAN4 0.12 1 NA 1.13348463913221 46 0.288884514645442 3 3 0 -5.765394228353 LTS-008 chr11 866500 1260214 393715 * c(AP2A2, MUC2, MUC6, CHID1, TSPAN4, MUC5B) 0.323914441198733 124 0.0724856081467768 1.18053759219064 1197 0.40509926332377 4 3 1 -6.78948733155487 LTS-008 chr11 1260215 1274102 13888 * MUC5B 0.375 1 NA 1.15681263263251 111 0.267771787575036 3 3 0 -5.76548020650487 LTS-008 chr11 1274103 2869188 1595086 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.379230824064538 69 0.0840795963157771 1.11091982222613 1867 0.269565754796466 3 2 1 -6.77479892078932 LTS-008 chr11 2869189 2869712 524 * KCNQ1 0.352 1 NA 1.17877064320141 9 0.505874243266051 4 4 0 -5.7644229653741 LTS-008 chr11 2869713 4975983 2106271 * c(LOC100506082, MIR4687, CDKN1C, OR7E12P, OSBPL5, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, MRGPRG-AS1, KCNQ1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NAP1L4, NUP98, SLC22A18, SLC22A18AS, TRIM68, KCNQ1DN, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, OR51G1, OR51G2, OR51E2, CARS) 0.327442283547042 70 0.0558622325629321 1.1046522484413 2259 0.335109653733485 4 3 1 -7.13015759444924 LTS-008 chr11 4975984 4976882 899 * OR51A2 NA 0 NA 0.33357014555424 40 0.286180237272122 0 NA NA -5.76456149110015 LTS-008 chr11 4976883 5776793 799911 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.322417102467188 82 0.0560770537120683 1.18301633023856 1239 0.663750098314297 4 3 1 -6.80292736272713 LTS-008 chr11 5776794 5809483 32690 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) NA 0 NA 1.75640469926495 40 0.570543015637128 6 NA NA -5.7644756474583 LTS-008 chr11 5809484 6173346 363863 * c(TRIM22, OR56A4, OR56A1, OR56B4, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.361 1 NA 1.09324582102809 308 0.277024761843861 3 3 0 -5.76883454875033 LTS-008 chr11 6173347 6221169 47823 * c(OR52W1, OR52B2) 0.362 1 NA 1.08464105390647 53 0.175182457237183 3 3 0 -5.76534062881732 LTS-008 chr11 6221170 9838462 3617293 * c(MIR5691, IPO7, TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, SWAP70, DENND5A, RRP8, ARFIP2, OR5E1P, OR10A3, TIMM10B, RBMXL2, KRT8P41, SBF2-AS1, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR10A6, LMO1, TMEM41B, LOC440028, TMEM9B-AS1, CYB5R2, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, RPL27A, NA NA NA NA NA NA NA NA NA LTS-008 SNORA3A, MRPL17, LOC644656, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, TUB, WEE1, ZNF143, ZNF214, ZNF215, RIC3, SBF2, FAM160A2, PPFIBP2, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.345744894712325 187 0.0497379048617415 1.07158192944484 5794 0.353680057387908 3 2 1 -6.94084927394835 LTS-008 NA NA NA NA LTS-008 chr11 9838463 15099012 5260550 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MRVI1, SPON1, LYVE1, CYP2R1, COPB1, ADM, EIF4G2, RRAS2, DKK3, AMPD3, CSNK2A3, GALNT18, ARNTL, RNF141, PDE3B, USP47, PARVA, PSMA1, PTH, ZBED5, RASSF10, SNORD97, TEAD1, ZBED5-AS1, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.393174366524593 61 0.0577824590018979 0.923980029982249 2945 0.232748792568749 3 2 1 -7.62901261763451 LTS-008 chr11 15099013 17809652 2710640 * c(USH1C, OR7E14P, C11orf58, PLEKHA7, SERGEF, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, MYOD1, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8, CALCB) 0.367566520826696 30 0.0472020479781686 0.999457275848498 2110 0.477743782972671 3 2 1 -6.76597619267833 LTS-008 chr11 17809653 18720551 910899 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.380363982883187 31 0.12050721657773 0.890021997948515 1266 0.221807380810002 2 1 1 -6.94706917805768 LTS-008 chr11 18720552 18722483 1932 * TMEM86A NA 0 NA 1.044 1 NA NA NA NA NA LTS-008 chr11 18722484 28042522 9320039 * c(LOC100126784, CCDC179, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, MUC15, TMEM86A, SLC5A12, ANO5, FANCF, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.352443790493035 106 0.0758198774630277 1.10597809974882 3264 0.307764819477816 3 2 1 -6.93579491358631 LTS-008 chr11 28042523 33183083 5140561 * c(DCDC5, EIF3M, DNAJC24, ARL14EP, CSTF3, METTL15, IMMP1L, FSHB, ELP4, LINC00294, DCDC1, KCNA4, DKFZp686K1684, CCDC73, PAX6, WT1-AS, TCP11L1, RCN1, MIR610, MPPED2, WT1, PRRG4, QSER1, KIF18A, DEPDC7) 0.368981233673158 29 0.0639270674342169 1.00912990435312 2264 0.262221746116436 3 2 1 -6.81150122074635 LTS-008 chr11 33183084 33307953 124870 * c(HIPK3, CSTF3-AS1) NA 0 NA 1.608 1 NA NA NA NA NA LTS-008 chr11 33307954 33765411 457458 * c(C11orf91, HIPK3, KIAA1549L, FBXO3, CD59) 0.295410491843714 17 0.0826390984234176 1.22857736776471 627 0.365020696335956 4 3 1 -6.74823337536779 LTS-008 chr11 33765412 35440749 1675338 * c(MIR1343, ELF5, ABTB2, FBXO3, EHF, LMO2, CAPRIN1, APIP, NAT10, SLC1A2, PDHX, CAT, CD44) 0.34256765135587 31 0.040357302040114 1.0162597921417 1484 0.340714289603239 3 2 1 -7.10810102332471 LTS-008 chr11 35440750 47447583 12006834 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, FJX1, PAMR1, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, NA NA NA NA NA NA NA NA NA LTS-008 RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.332477967137489 69 0.074517458775807 1.08522489313906 5389 0.361565994390258 3 2 1 -6.97887730028995 LTS-008 NA NA NA NA LTS-008 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 1.022 1 NA NA NA NA NA LTS-008 chr11 47447717 48153961 706245 * c(CELF1, C1QTNF4, PTPMT1, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.332900941837737 27 0.0688986621134666 0.978003850169605 1002 0.215322748492057 3 2 1 -6.99642614964742 LTS-008 chr11 48153962 48184983 31022 * PTPRJ 0.317 1 NA 1.00914807530775 78 0.260358439111385 3 3 0 -5.76486254986516 LTS-008 chr11 48184984 48346419 161436 * c(OR4X2, OR4B1, OR4S1, OR4X1, PTPRJ) 0.341656326064682 4 0.0329747378053766 1.24791722691627 126 3.5139389433042 15 10 5 -6.74673883963878 LTS-008 chr11 48346420 48346423 4 * character(0) 0.386 1 NA 1.867 1 NA NA NA NA NA LTS-008 chr11 48346424 48388657 42234 * c(OR4C3, OR4C45) 0.331997297291 107 0.0760548160073521 1.81075391016641 192 0.995577503032866 10 7 3 -6.75350545315886 LTS-008 chr11 48388658 48388675 18 * character(0) NA 0 NA 1.027 1 NA NA NA NA NA LTS-008 chr11 48388676 51516257 3127582 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.348397403158127 37 0.0621142147634153 1.08749846923318 485 0.44177575802662 3 2 1 -6.85266596291454 LTS-008 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.76086396311059 6 0.0990609240148034 2 NA NA -5.76585015751283 LTS-008 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.438 1 NA 0.687635726873905 21 0.21402233973294 2 2 0 -5.78566523551289 LTS-008 chr11 55111585 56128763 1017179 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.37220725600363 28 0.13007561394787 0.938613410453825 750 0.227462829823888 3 2 1 -6.88040629468592 LTS-008 chr11 56128764 56128775 12 * OR8J1 0.397 1 NA 1.621 1 NA NA NA NA NA LTS-008 chr11 56128776 56143977 15202 * OR8U8 0.285358504100269 19 0.130545571348975 1.55599717006824 40 0.80819517151268 8 6 2 -6.7360026849097 LTS-008 chr11 56143978 56143997 20 * OR8U8 NA 0 NA 0.705 1 NA NA NA NA NA LTS-008 chr11 56143998 56468835 324838 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.330414799389597 17 0.12006796482189 0.917541983102305 275 0.258139666161914 3 2 1 -6.86822160127436 LTS-008 chr11 56468836 56508604 39769 * OR8U8 0.481 1 NA 0.81402987681721 3 0.281748706001169 2 2 0 -5.76455792054136 LTS-008 chr11 56508605 62406908 5898304 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, PRG3, SCGB1D2, SCGB1D1, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, APLNR, EEF1G, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, GANAB, DTX4, MS4A6E, FTH1, EML3, ZDHHC5, TKFC, DKFZP434K028, NA NA NA NA NA NA NA NA NA LTS-008 B3GAT3, TIMM10, GIF, PRPF19, SELENOH, OR9G4, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, INCENP, FAM111B, ZFP91-CNTF, OR5AK2, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, SCGB1D4, MIR130A, SCGB2A1, SCGB2A2, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, PRG2, MS4A7, RAB3IL1, ROM1, FAM111A, MS4A6A, MS4A5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BTBD18, PGA3, PGA4, TUT1, SSRP1, STX3, MIR611, TCN1, SERPING1, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, SYT7, CD5, MTA2, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN, FADS2) 0.423995011377591 165 0.0722819349678073 0.869159336956272 8499 0.239403401069965 2 1 1 -7.17395667267828 LTS-008 NA NA NA NA LTS-008 chr11 62406909 68851495 6444587 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, NA NA NA NA NA NA NA NA NA LTS-008 MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ANKRD13D, TBX10, IGHMBP2, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, METTL12, SF1, ZFPL1, LRFN4, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, TMEM134, MUS81, FOSL1, INTS5, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.421865658780861 211 0.087546622198985 0.840654326662806 15252 0.201205428670535 2 1 1 -7.00326760699671 LTS-008 NA NA NA NA LTS-008 chr11 68851496 68852632 1137 * TPCN2 NA 0 NA 0.973 1 NA NA NA NA NA LTS-008 chr11 68852633 73131083 4278451 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, ARAP1, DHCR7, CTTN, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, MYEOV, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, PDE2A, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, CCND1, CLPB, RELT, NA NA NA NA NA NA NA NA NA LTS-008 PPFIA1, FADD, ATG16L2, ARHGEF17, FCHSD2, FGF19) 0.408106943788501 57 0.0989293183291114 0.881822928447747 3884 0.21080290237681 2 1 1 -7.29879372749013 LTS-008 NA NA NA NA LTS-008 chr11 73131084 73135958 4875 * FAM168A NA 0 NA 0.779 1 NA NA NA NA NA LTS-008 chr11 73135959 92086530 18950572 * c(NAALAD2, KCNE3, MIR708, KCTD21-AS1, SNORA70E, MIR4300, RAB30-AS1, LOC100506368, TPBGL, NDUFC2-KCTD14, MIR4490, MIR4696, MIR5579, GRM5-AS1, POLD3, CTSC, NEU3, ME3, PRSS23, SLCO2B1, SNORD15B, FAT3, TRIM64, CLNS1A, XRRA1, DLG2, B3GNT6, FOLH1B, GDPD4, DDIAS, CCDC83, FAM181B, CCDC89, FAM168A, RAB38, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, CHORDC1, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, NA NA NA NA NA NA NA NA NA LTS-008 AAMDC, GRM5, ANKRD42, OR2AT4, DNAJB13, LIPT2, GUCY2EP, TRIM77, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, NOX4, PAK1, COA4, PPME1, HIKESHI, PCF11, MRPL48, RSF1, SYTL2, ACER3, PRCP, TMEM126B, THAP12, EMSY, TRIM49, USP35, PLEKHB1, CREBZF, RAB6A, CCDC90B, CCDC81, SNORD15A, RPS3, TRIM64B, TRIM49C, UBTFL1, TMEM135, KCTD14, THRSP, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PICALM, FZD4, TMEM126A, DGAT2, OR7E2P, SERPINH1, EED, INTS4, SPCS2, GAB2) 0.417912405018268 219 0.0958377814690972 0.83132772283171 9840 0.240169067136699 2 1 1 -7.0828363613765 LTS-008 NA NA NA NA LTS-008 chr11 92086531 92628542 542012 * FAT3 0.431507291886527 8 0.0358159980216343 0.957626638852499 388 0.212613338804402 2 1 1 -6.9920617301539 LTS-008 chr11 92628543 96125939 3497397 * c(MIR1304, MIR1260B, GPR83, SLC36A4, FAT3, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, MTNR1B, CWC15, ANKRD49, KDM4D, SMCO4, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CCDC82, MAML2, CEP295, JRKL, MTMR2, MED17, CEP57) 0.451980726892026 59 0.0614144974955429 0.836811589986712 3093 0.191965727677093 2 1 1 -6.98922345122259 LTS-008 chr11 96125940 102207851 6081912 * c(MIR3920, JRKL-AS1, LOC101054525, YAP1, ARHGAP42, ANGPTL5, BIRC3, PGR, CNTN5, CEP126, TRPC6, TMEM133, C11orf70, JRKL) 0.404599149242041 25 0.0631578709795277 1.12268474935054 1357 0.272968816283515 3 2 1 -7.06786599851572 LTS-008 chr11 102207852 102209172 1321 * BIRC3 0.365 1 NA 1.04206527837095 27 0.216886502543969 3 3 0 -5.76441134970381 LTS-008 chr11 102209173 119534193 17325021 * c(LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, MIR4693, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, CARD16, TMEM123, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, EXPH5, PHLDB1, SIK2, SIK3, NA NA NA NA NA NA NA NA NA LTS-008 BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, GRIA4, GUCY1A2, H2AFX, HMBS, BIRC2, BIRC3, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MCAM, KMT2A, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 FXYD6, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, RPS25, SCN2B, SCN4B, SDHD, MMP27, ABCG4, CXCR5, LOC643733, LOC643923, CLDN25, C11orf1, RPL23AP64, SLN, TAGLN, THY1, UPK2, ZBTB16, RNF26, DYNC2H1, NLRX1, ALG9, PDZD3, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BCO2, TMPRSS13, DCUN1D5, MSANTD4, BUD13, TMEM25, DIXDC1, ZC3H12C, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, UBE4A, C2CD2L) 0.405997207986076 285 0.0707456364055235 1.10743881087735 14932 0.378259749611905 3 2 1 -7.0385332279122 LTS-008 NA NA NA NA LTS-008 chr11 119534194 119534198 5 * NECTIN1 NA 0 NA 1.175 1 NA NA NA NA NA LTS-008 chr11 119534199 134856661 15322463 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, NA NA NA NA NA NA NA NA NA LTS-008 LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.395529031668605 238 0.0933920277300332 1.14732232229095 10459 0.373932786265046 3 2 1 -7.22940388622273 LTS-008 NA NA NA NA LTS-008 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.106 1 NA NA NA NA NA LTS-008 chr12 90923 248071 157149 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.359 1 NA 1.20497038160643 43 0.300800022236751 4 4 0 -5.7711236317669 LTS-008 chr12 248072 7654076 7406005 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NA NA NA NA NA NA NA NA NA LTS-008 NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.315268150693521 189 0.0530408191172267 1.30616736884763 9237 0.33073847583786 4 3 1 -6.75676141669134 LTS-008 NA NA NA NA LTS-008 chr12 7654077 7655020 944 * CD163 NA 0 NA 1.136 1 NA NA NA NA NA LTS-008 chr12 7655021 9590665 1935645 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.274012245285058 58 0.0867489162506334 1.22589166397235 2203 0.470708970984802 4 3 1 -6.82798372922279 LTS-008 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.073 1 NA NA NA NA NA LTS-008 chr12 9633155 9705133 71979 * character(0) NA 0 NA 0.0416782370058807 46 0.0759264740956607 0 NA NA -12.7562348581831 LTS-008 chr12 9705134 9717889 12756 * character(0) NA 0 NA 0.0621839276855063 50 0.123270998956257 0 NA NA -6.75661950331389 LTS-008 chr12 9717890 10573016 855127 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.300143870935211 30 0.0774129767255932 1.16444577073579 1094 0.343627854984365 4 3 1 -6.79155731200976 LTS-008 chr12 10573017 10573094 78 * KLRC3 0.032 1 NA 3.821 1 NA NA NA NA NA LTS-008 chr12 10573095 10600248 27154 * c(KLRC1, KLRC2, KLRC3) 0.275824605218018 7 0.0999866657776593 1.75559774196193 110 0.537425167977812 8 6 2 -6.73897756595969 LTS-008 chr12 10600249 10601795 1547 * KLRC1 NA 0 NA 1.067 1 NA NA NA NA NA LTS-008 chr12 10601796 11215070 613275 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.275239001604557 54 0.0460372839818129 1.18783953473166 699 0.284910867827574 4 3 1 -7.00950916715153 LTS-008 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.198 1 NA NA NA NA NA LTS-008 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) NA 0 NA 0.205359166469481 57 0.151809858318578 0 NA NA -5.7676613323178 LTS-008 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.302 1 NA NA NA NA NA LTS-008 chr12 11285579 34176861 22891283 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, TAS2R30, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, NA NA NA NA NA NA NA NA NA LTS-008 GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, OVCH1, SYT10, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, ALG10, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.296877417661291 278 0.0758274663402753 1.2783832573738 11857 0.781792924222463 4 3 1 -6.74946015005643 LTS-008 NA NA NA NA LTS-008 chr12 34176862 34182671 5810 * ALG10 NA 0 NA 1.38008654518918 49 0.289742484773968 4 NA NA -5.7645374723233 LTS-008 chr12 38710341 38715000 4660 * ALG10B 0.477 1 NA 0.80582281734162 43 0.187885538657892 2 2 0 -5.76442161508509 LTS-008 chr12 38715001 53200584 14485584 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, KRT71, LARP4, SLC2A13, LRRK2, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, KRT74, CNTN1, COL2A1, ASB8, KRT72, PRICKLE1, BCDIN3D, ALG10B, CPNE8, KRT80, GRASP, ANO6, ARID2, CELA1, ABCD2, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, C12orf80, LINC00592, NA NA NA NA NA NA NA NA NA LTS-008 C12orf40, GXYLT1, TMPRSS12, KRT6C, RACGAP1, SENP1, PDZRN4, NR4A1, KRT73, C1QL4, ANKRD33, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, LINC00938, FIGNL2, ASIC1, DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, KRT76, BIN2, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, POU6F1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 KANSL2, SLC38A4, KIF21A, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, NCKAP5L, ATG101, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 DDX23, SLC4A8, DAZAP2) 0.444520846219885 341 0.0718918517456678 0.821227303287728 15082 0.362731016422981 2 1 1 -6.84222087082895 LTS-008 NA NA NA NA LTS-008 chr12 53200585 53202230 1646 * KRT4 0 1 NA 1.06422941494887 23 1.62277257739483 3 3 0 -5.76441019369608 LTS-008 chr12 53202231 53684700 482470 * c(KRT78, EIF4B, TNS2, LOC283335, ZNF740, KRT79, IGFBP6, ITGB7, KRT4, KRT8, KRT18, CSAD, RARG, SOAT2, SPRYD3, MFSD5, ESPL1) 0.308962466347411 10 0.232578206679436 0.842694142885384 1300 0.742592098744355 3 2 1 -6.80657291492812 LTS-008 chr12 53684701 53873844 189144 * c(SP7, AMHR2, PCBP2, PFDN5, PRR13, C12orf10, SP1, AAAS, ESPL1) 0.479 1 NA 0.835559400265326 631 0.200014062683224 2 2 0 -5.77101471149477 LTS-008 chr12 53873845 57920138 4046294 * c(HOTAIR, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, CDK2, RNF41, GDF11, CNPY2, PTGES3, ATF7, BAZ2A, NXPH4, GPR182, MBD6, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, GTSF1, OR10A7, MYL6B, CS, DGKA, DDIT3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, OR6C74, OR6C3, ZNF385A, BLOC1S1, SNORD59A, GLS2, GLI1, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NA NA NA NA NA NA NA NA NA LTS-008 NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MARS, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, PDE1B, IL23A, ATP5G2, GPR84, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RBMS2, RDH5, RPL41, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 RPS26, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SMARCC2, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, COQ10A, CD63, TESPA1, ZBTB39, PAN2) 0.436160246032537 98 0.090459793426716 0.827175099032568 8917 0.189235447484261 2 1 1 -6.84039085229373 LTS-008 NA NA NA NA LTS-008 chr12 57920139 57920305 167 * MBD6 NA 0 NA 0.712 1 NA NA NA NA NA LTS-008 chr12 57920306 58112822 192517 * c(DCTN2, OS9, MBD6, ARHGEF25, DTX3, B4GALNT1, KIF5A, SLC26A10, PIP4K2C) 0.414077714904019 5 0.0369350781777973 0.76090842805537 789 0.141692921800353 2 1 1 -6.79164594543752 LTS-008 chr12 58112823 58175116 62294 * c(AGAP2-AS1, CDK4, OS9, AGAP2, CYP27B1, METTL21B, METTL1, TSPAN31, MARCH9) 0 1 NA 0.781945419888531 511 0.153322335763419 2 2 0 -5.76492742203739 LTS-008 chr12 58175117 58217774 42658 * c(TSFM, CTDSP2, AVIL, METTL21B) 0.340279443392063 19 0.122264046538725 0.764068744023712 316 0.178798678519236 3 2 1 -6.8614284459472 LTS-008 chr12 58217775 58217780 6 * CTDSP2 0.495 1 NA 0.853 1 NA NA NA NA NA LTS-008 chr12 58217781 68549313 10331533 * c(MIR548Z, LOC100506844, CTDSP2, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, MIR26A2, TMBIM4, AVPR1A, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, ATP23, SLC16A7, HELB, USP15) 0.451999040669112 96 0.0609361390986138 0.780010803852559 4302 0.219676296424502 2 1 1 -6.90692233506314 LTS-008 chr12 68549314 68551685 2372 * IFNG NA 0 NA 0.585 1 NA NA NA NA NA LTS-008 chr12 68551686 69969152 1417467 * c(LOC100130075, MIR1279, SNORA70G, LOC100507250, FRS2, CPSF6, CPM, IFNG, LYZ, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B, YEATS4) 0.456537442123246 17 0.0502652522945553 0.707388881936154 1015 0.20283477953517 2 1 1 -7.2442012524183 LTS-008 chr12 69969153 75437250 5468098 * c(MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.443972452212503 82 0.0612510494351776 0.794040143680665 2766 0.199250127169488 2 1 1 -6.79405127832862 LTS-008 chr12 75437251 77416544 1979294 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2) 0.360144301978538 11 0.167795763301158 0.724440549597254 1333 0.322470002565304 2 1 1 -6.91997975519952 LTS-008 chr12 77416545 88592229 11175685 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.449600252631428 74 0.0412370990001769 0.80211979120861 3499 0.254191576442489 2 1 1 -6.9542531525637 LTS-008 chr12 88592230 88592328 99 * TMTC3 NA 0 NA 0.811 1 NA NA NA NA NA LTS-008 chr12 88592329 107712440 19120112 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, BTBD11, SPIC, ANO4, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, NA NA NA NA NA NA NA NA NA LTS-008 POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, LOC643339, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, TMEM263, NUAK1, NR1H4) 0.451551495335021 259 0.0545222010556202 0.759908983705381 11367 0.484933617490704 2 1 1 -6.98208949955934 LTS-008 NA NA NA NA LTS-008 chr12 107712441 107974558 262118 * BTBD11 0 1 NA 0.776700082770704 47 0.495418045470675 2 2 0 -5.76480322175666 LTS-008 chr12 107974559 117468873 9494315 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, MIR4472-2, MIR4497, ARPC3, TRAFD1, ERP29, SDS, PRDM4, PWP1, FICD, SDSL, IQCD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, RAD9B, FAM109A, PPTC7, CCDC63, DAO, DTX1, PLBD2, ALDH2, RPH3A, CUX2, MED13L, ISCU, CORO1C, TBX5-AS1, FBXW8, MYO1H, HECTD4, IFT81, FAM216A, ACACB, MMAB, TMEM119, CFAP73, C12orf76, MVK, MYL2, ATP2A2, OAS1, OAS2, OAS3, GPN3, GLTP, MAPKAPK5-AS1, NA NA NA NA NA NA NA NA NA LTS-008 ANAPC7, VPS29, TPCN1, SSH1, PPP1CC, SVOP, PTPN11, TRPV4, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, LOC728739, UNG, DDX54, TCTN1, C12orf49, NAA25, SLC8B1, ACAD10, BRAP, KCTD10, TCHP, HVCN1, RASAL1, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, WSCD2, SART3, GIT2, RBM19) 0.429455118105009 128 0.103725734461923 0.773537450655665 9894 0.447468888221486 2 1 1 -6.75801949424401 LTS-008 NA NA NA NA LTS-008 chr12 117468874 117486478 17605 * c(FBXW8, TESC) 0.491 1 NA 0.741883529850914 25 0.204591120693608 2 2 0 -5.76566873548183 LTS-008 chr12 117486479 118405927 919449 * c(FBXO21, KSR2, NOS1, TESC) 0.274955596196618 9 0.213707029468954 0.796757980500929 595 0.358566624543843 2 2 0 -6.84890099091217 LTS-008 chr12 118405928 118455759 49832 * c(KSR2, RFC5) 0.467 1 NA 0.710108423996322 37 0.264825011633695 2 2 0 -5.76998485915155 LTS-008 chr12 118455760 123351191 4895432 * c(MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, MLXIP, SETD1B, SIRT4, LRRC43, HSPB8, HCAR1, MORN3, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, TMEM233, MSI1, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, CLIP1, SUDS3, NA NA NA NA NA NA NA NA NA LTS-008 C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, VPS37B, RNF34, COQ5, SRRM4, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.444838366875456 149 0.0688632888302735 0.761861699748803 6645 0.198738091412316 2 1 1 -6.92622646550035 LTS-008 NA NA NA NA LTS-008 chr12 123351192 123473295 122104 * c(ABCB9, ARL6IP4, PITPNM2, OGFOD2, VPS37B) 0 1 NA 0.748228708345298 429 0.149887860071098 2 2 0 -5.77696528282812 LTS-008 chr12 123473296 124192818 719523 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, EIF2B1, GTF2H3, RILPL1, KMT5A, SBNO1, PITPNM2, DDX55, TCTN2, CDK2AP1, C12orf65) 0.301923173825136 9 0.212977763575867 0.74370821814661 1199 0.17785034161667 2 2 0 -6.98587226192197 LTS-008 chr12 124192819 124265687 72869 * c(DNAH10, ATP6V0A2, TCTN2) 0.492 1 NA 0.758646682972555 207 0.180373150784023 2 2 0 -5.76754182547653 LTS-008 chr12 124265688 125627893 1362206 * c(ZNF664-FAM101A, MIR5188, BRI3BP, RFLNA, ZNF664, DNAH10, DHX37, AACS, UBC, CCDC92, SCARB1, NCOR2) 0.436781971810414 40 0.10545028905384 0.785688295807538 1657 0.215290346426361 2 1 1 -6.74434248580992 LTS-008 chr12 125627894 125811053 183160 * character(0) NA 0 NA 0.878 1 NA NA NA NA NA LTS-008 chr12 125811054 133584085 7773032 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1) 0.449113726476917 148 0.0687883216501198 0.805925358742004 4119 0.257072334351707 2 1 1 -6.81970014901165 LTS-008 chr12 133584086 133812415 228330 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.421137185877648 30 0.108670444543314 0.713939578895832 699 0.183385482709396 2 1 1 -6.78161713406005 LTS-008 chr12 133812416 133812708 293 * ANHX NA 0 NA 0.578567877975252 7 0.0352555297925358 1 NA NA -5.76503144312101 LTS-008 chr13 19271620 19775525 503906 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.255 1 NA 1.15627289476031 62 0.328607171139613 3 3 0 -5.78983918565509 LTS-008 chr13 19775526 20797699 1022174 * c(ANKRD26P3, LINC00421, GJB6, GJA3, GJB2, MPHOSPH8, PSPC1, ZMYM2, ZMYM5, TPTE2) 0.295883113084535 7 0.0515604130169279 1.09908646257918 699 0.243050401660846 4 3 1 -7.04386176807341 LTS-008 chr13 20797700 20977789 180090 * GJB6 NA 0 NA 0.273 1 NA NA NA NA NA LTS-008 chr13 20977790 21013860 36071 * c(MIR4499, CRYL1) NA 0 NA 0.34957102207887 43 0.0501959173819562 0 NA NA -6.08519072865038 LTS-008 chr13 21013861 21063528 49668 * CRYL1 NA 0 NA 1.17 1 NA NA NA NA NA LTS-008 chr13 21063529 24463556 3400028 * c(SACS-AS1, LINC00327, LINC00424, SAP18, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, SACS, LATS2, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, MRPL57, IFT88) 0.291329117913911 39 0.079002622139985 1.13573044261864 1610 0.25313982826992 4 3 1 -7.31327317366585 LTS-008 chr13 24463557 24465199 1643 * c(MIPEP, C1QTNF9B-AS1) NA 0 NA 0.354 1 NA NA NA NA NA LTS-008 chr13 24465200 24471187 5988 * c(C1QTNF9B, C1QTNF9B-AS1) 0.37796737150325 2 0.0855599205235723 0.597193884891282 39 0.420660407142925 3 2 1 -6.74020909847472 LTS-008 chr13 24471188 24695756 224569 * c(SPATA13, C1QTNF9B, ANKRD20A19P) NA 0 NA 0.931 1 NA NA NA NA NA LTS-008 chr13 24695757 24890273 194517 * c(MIR2276, SPATA13-AS1, SPATA13, C1QTNF9) 0.291329180722681 8 0.0251875110776296 1.16842505062706 224 0.283528611138984 4 3 1 -6.9153772043936 LTS-008 chr13 24890274 24896629 6356 * c(SPATA13, C1QTNF9) 0.381098060078792 3 0.021 2.12133824393079 48 1.37497523365832 16 10 6 -6.74077070074541 LTS-008 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.755 1 NA NA NA NA NA LTS-008 chr13 24995032 33349335 8354304 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, TPTE2P6, RASL11A, SHISA2, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, CENPJ, RNF17, RNF6, NA NA NA NA NA NA NA NA NA LTS-008 RPL21, SNORA27, TPTE2P1, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.269856488684462 95 0.0710567616899258 1.11756279168256 5590 0.405772987087692 4 3 1 -7.53311974654981 LTS-008 NA NA NA NA LTS-008 chr13 33349336 33349410 75 * PDS5B NA 0 NA 1.532 1 NA NA NA NA NA LTS-008 chr13 33349411 41185340 7835930 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.268000580449603 93 0.0551502177426712 1.18001010205832 3114 0.345707766318532 4 3 1 -7.36592601073882 LTS-008 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 1.111 1 NA NA NA NA NA LTS-008 chr13 41239781 53421740 12181960 * c(LINC00462, TPT1-AS1, MIR759, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA LTS-008 CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.28100145036316 133 0.0461345978244899 1.08405017730437 7130 0.638094830903012 4 3 1 -7.45209382006119 LTS-008 NA NA NA NA LTS-008 chr13 53421741 53421746 6 * PCDH8 NA 0 NA 1.136 1 NA NA NA NA NA LTS-008 chr13 53421747 114839373 61417627 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, MYCBP2-AS1, NA NA NA NA NA NA NA NA NA LTS-008 RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, GPC5, RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TGDS, NALCN, SLITRK5, GAS6, FBXL3, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, MZT1, ATP4B, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.274288029958616 250 0.0840400684699491 1.14618446818745 13286 0.326641554965761 3 2 1 -9.36273375620164 LTS-008 NA NA NA NA LTS-008 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.504 1 NA NA NA NA NA LTS-008 chr13 114897818 115047700 149883 * c(RASA3, UPF3A, CDC16) 0.322366868747082 6 0.030513385041104 0.926230848609293 118 0.189279647475826 4 3 1 -7.21000609443768 LTS-008 chr13 115047701 115092817 45117 * c(CHAMP1, UPF3A) NA 0 NA 0.894133727233885 111 0.13368376328765 2 NA NA -5.78473413329108 LTS-008 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.274 1 NA 0.805915022114721 13 0.348034923092939 2 2 0 -5.76497203769179 LTS-008 chr14 20201973 22471696 2269724 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, NA NA NA NA NA NA NA NA NA LTS-008 ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.229825396523512 142 0.0524032583754369 0.809943699505735 3773 0.497907764256774 2 2 0 -7.23087524282432 LTS-008 NA NA NA NA LTS-008 chr14 22471697 22978511 506815 * character(0) 0.201223790785093 25 0.0436274760519866 0.981788188130822 582 0.248665141839377 2 2 0 -7.07866676995905 LTS-008 chr14 22978512 22979847 1336 * character(0) NA 0 NA 0.713 1 NA NA NA NA NA LTS-008 chr14 22979848 35008625 12028778 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, AP4S1, EGLN3, DTD2, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, HECTD1, HEATR5A, NGDN, LRP10, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, NA NA NA NA NA NA NA NA NA LTS-008 LINC01551, ARHGAP5, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, ARHGAP5-AS1, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PPP1R3E, CPNE6, AKAP6, REC8) 0.218565443226474 140 0.0637790233793771 0.812248680373369 9153 0.192640252795357 2 2 0 -7.02007443753799 LTS-008 NA NA NA NA LTS-008 chr14 35008626 36840701 1832076 * c(PTCSC3, LINC00609, CFL2, BAZ1A, RALGAPA1, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, SRP54, BRMS1L, INSM2, KIAA0391) 0.205709215770652 22 0.0452596166624608 0.748661749451512 1267 0.343883820265687 2 2 0 -6.95382396157451 LTS-008 chr14 36840702 36840741 40 * character(0) NA 0 NA 0.816 1 NA NA NA NA NA LTS-008 chr14 36840742 38724167 1883426 * c(SLC25A21-AS1, MIR4503, MIPOL1, CLEC14A, SFTA3, NKX2-8, FOXA1, PAX9, SSTR1, NKX2-1, SLC25A21) 0.22632868517714 9 0.0976875688668272 0.839304760240687 911 0.235062637612625 2 2 0 -6.92069544098822 LTS-008 chr14 38724168 64644228 25920061 * c(SNORD127, KTN1-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, TMEM30B, MDGA2, LINC01599, NID2, ATG14, FKBP3, DAAM1, SAMD4A, FAM179B, SYNE2, NA NA NA NA NA NA NA NA NA LTS-008 KLHDC2, FBXO33, GCH1, TIMM9, ATP5S, KCNH5, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, ERO1A, HIF1A, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MGAT2, MIA2, MNAT1, SIX6, OTX2, ATL1, NIN, DACT1, JKAMP, DHRS7, C14orf166, SIX4, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, ACTR10, PSMA3, PSMC6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, FANCM, PYGL, ARID4A, SAV1, RPL36AL, RPS29, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SOS2, STYX, CCDC175, VCPKMT, L2HGDH, DDHD1, SGPP1, TMX1, SYT16, FSCB, GEMIN2, CDKL1, NEMF, MAPK1IP1L, KIAA0586, DLGAP5) 0.22349307968281 162 0.0756509820392694 0.767961971343471 12637 0.275833112927524 2 2 0 -7.17895653119188 LTS-008 NA NA NA NA LTS-008 chr14 64644229 64653067 8839 * SYNE2 NA 0 NA 0.854 1 NA NA NA NA NA LTS-008 chr14 64653068 73989983 9336916 * c(MED6, LOC100289511, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, ADAM21P1, PPP1R36, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, SYNE2, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, DCAF4, PLEK2, GPX2, ADAM20P1, SNORD56B, HSPA2, RAB15, ARG2, HEATR4, PLEKHD1, MAX, MAP3K9, LINC00238, TEX21P, MTHFD1, RDH11, COX16, ATP6V1D, PIGH, ZFYVE1, EXD2, NA NA NA NA NA NA NA NA NA LTS-008 SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, PLEKHH1, RBM25, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, SLC8A3, SLC10A1, SPTB, ZFP36L1, ZBTB25, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, CHURC1, AKAP5, RGS6, SUSD6) 0.208812106020784 153 0.0758032884833609 0.793665232331302 7306 0.218135519447219 2 2 0 -6.81891055709548 LTS-008 NA NA NA NA LTS-008 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.001 1 NA NA NA NA NA LTS-008 chr14 74003792 74010364 6573 * c(HEATR4, ACOT1) NA 0 NA 0.158161817021884 39 0.248986563978531 0 NA NA -5.78681055448711 LTS-008 chr14 74010365 74010368 4 * c(HEATR4, ACOT1) NA 0 NA 0.08 1 NA NA NA NA NA LTS-008 chr14 74010369 74058419 48051 * c(ACOT2, ACOT4, HEATR4, ACOT1) 0.252574749374072 2 0.0183847763108503 0.547260587062509 54 0.32584932671049 1 1 0 -6.98616270177778 LTS-008 chr14 74058420 78367045 4308626 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, GPATCH2L, YLPM1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, ACOT6, IRF2BPL, SYNDIG1L, TGFB3, LINC01220, NA NA NA NA NA NA NA NA NA LTS-008 ZC2HC1C, BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, ALKBH1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.222408207015951 154 0.058765015906355 0.780071788494778 6362 0.563403997622941 2 2 0 -7.03196914863047 LTS-008 NA NA NA NA LTS-008 chr14 78367046 78374154 7109 * ADCK1 NA 0 NA 0.845 1 NA NA NA NA NA LTS-008 chr14 78374155 88792709 10418555 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GALC, LOC283585, LINC01146, GTF2A1, KCNK10, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.218009706005289 27 0.0697893860451459 0.845016647696419 1779 0.237830189118298 2 2 0 -7.27294233943195 LTS-008 chr14 88792710 88792776 67 * KCNK10 NA 0 NA 0.785 1 NA NA NA NA NA LTS-008 chr14 88792777 92629912 3837136 * c(SNORA11B, FBLN5, PTPN21, FOXN3, TTC8, TC2N, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, KCNK13, PSMC1, CATSPERB, ZC3H14, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11) 0.227616301491796 60 0.0689178889964631 0.760771983287876 3381 0.189894693844606 2 2 0 -7.13446959734718 LTS-008 chr14 92629913 106452805 13822893 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, NA NA NA NA NA NA NA NA NA LTS-008 DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2, GOLGA5) 0.230753847662157 275 0.0665956846624483 0.810879693154101 13910 0.300081757703712 2 2 0 -7.09182517241124 LTS-008 NA NA NA NA LTS-008 chr14 106452806 106452938 133 * character(0) NA 0 NA 0.672 1 NA NA NA NA NA LTS-008 chr14 106452939 106518848 65910 * character(0) 0.240767975978783 13 0.0392962123835403 0.613715862854241 43 0.161529336243703 1 1 0 -6.97267587585058 LTS-008 chr14 106518849 106791119 272271 * LINC00226 0.405 1 NA 0.566634826984522 81 0.291154703055113 1 1 0 -5.76840657461124 LTS-008 chr14 106791120 106866465 75346 * character(0) 0.357 1 NA 0.692913669579852 53 0.297994467175725 2 2 0 -5.77421846086348 LTS-008 chr14 106866466 107113927 247462 * LINC00221 0.348555245002436 32 0.0868595455039991 1.07282830698904 124 0.423724223303447 3 2 1 -6.78866148525358 LTS-008 chr14 107113928 107114103 176 * character(0) NA 0 NA 0.815 1 NA NA NA NA NA LTS-008 chr14 107114104 107259629 145526 * character(0) 0.211208632995158 3 0.00346410161513776 0.671217156000253 55 0.43001343100158 11 9 2 -7.67375476534675 LTS-008 chr14 107259630 107283157 23528 * character(0) NA 0 NA 0.573071620360985 13 0.145852445634058 1 NA NA -5.7665539909666 LTS-008 chr15 20169987 20446043 276057 * character(0) 0.322 1 NA 0.628404725709939 23 0.195570938778904 1 1 0 -5.85907318748259 LTS-008 chr15 20446044 22345085 1899042 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.336697451184087 22 0.121795975878761 0.764546531736886 165 0.340188906479397 2 1 1 -7.04541374328219 LTS-008 chr15 22345086 22345134 49 * LOC727924 0.433 1 NA 1.054 1 NA NA NA NA NA LTS-008 chr15 22345135 22414262 69128 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.446468570668023 5 0.0504033729030112 1.01141200206046 65 0.5119985436052 2 1 1 -6.85457973921534 LTS-008 chr15 22414263 22483192 68930 * OR4N3P NA 0 NA 0.80949547391766 36 0.262426291994836 2 NA NA -5.76457537386243 LTS-008 chr15 22483193 22489860 6668 * character(0) NA 0 NA 0.654 1 NA NA NA NA NA LTS-008 chr15 22489861 22960868 471008 * c(GOLGA8DP, TUBGCP5, CYFIP1, GOLGA6L1, REREP3) 0.23 1 NA 0.567410635126376 243 0.1295545956699 1 1 0 -5.80125409682532 LTS-008 chr15 22960869 28491201 5530333 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-008 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.225539370069223 27 0.0872741040101199 0.573370239395866 2206 0.157909378500315 1 1 0 -7.26072002267684 LTS-008 NA NA NA NA LTS-008 chr15 28491202 28491843 642 * HERC2 NA 0 NA 0.498 1 NA NA NA NA NA LTS-008 chr15 28491844 41864803 13372960 * c(SRP14-AS1, ANKRD63, WHAMMP1, LOC100288637, LOC100289656, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, FAN1, GOLGA8A, RTF1, FAM189A1, LPCAT4, NUTM1, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, LOC283710, FAM98B, APBA2, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, NA NA NA NA NA NA NA NA NA LTS-008 HERC2P10, C15orf53, C15orf54, LTK, MIR211, MEIS2, TRPM1, HERC2P9, WHAMMP2, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, KLF13, PLCB2, DLL4, INO80, PPP1R14D, MTMR10, ZNF770, RMDN3, DNAJC17, NOP10, NSMCE3, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, SCG5, C15orf56, PHGR1, PDCD6IPP2, GOLGA8T, SPINT1, SRP14, ACTC1, BUB1B, THBS1, TJP1, ANP32AP1, GOLGA8O, GOLGA6L7P, OIP5-AS1, TYRO3, CHAC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 KATNBL1, C15orf41, ZFYVE19, DISP2, HERC2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6) 0.253719108046749 180 0.075650728639171 0.539875715350142 9485 0.148806313934064 1 1 0 -6.74869369346987 LTS-008 NA NA NA NA LTS-008 chr15 41864804 41865132 329 * TYRO3 NA 0 NA 0.682 1 NA NA NA NA NA LTS-008 chr15 41865133 41871537 6405 * TYRO3 0.304843955449954 2 0.161220346110533 0.837921287851844 49 0.242929745800217 4 3 1 -6.74581486880442 LTS-008 chr15 41871538 41961082 89545 * MGA NA 0 NA 0.472 1 NA NA NA NA NA LTS-008 chr15 41961083 42483400 522318 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, MIR626, JMJD7-PLA2G4B) 0.25233092816689 44 0.0608152332925134 0.570912759866848 1618 0.146504740149516 1 1 0 -6.79888608616925 LTS-008 chr15 42483401 45059989 2576589 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, VPS39, CCNDBP1, LRRC57, HYPK, GANC, TMEM87A, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, EIF3J-AS1, MIR627, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, SNAP23, TGM5, PPIP5K1, LCMT2) 0.263877237716589 25 0.0705943340502621 0.537856191752119 4840 0.128906584269511 1 1 0 -6.73713862266845 LTS-008 chr15 45059990 45060004 15 * TRIM69 NA 0 NA 0.582 1 NA NA NA NA NA LTS-008 chr15 45060005 45123849 63845 * TRIM69 NA 0 NA 1.13079455079555 39 1.38974637245689 3 NA NA -5.76451646621212 LTS-008 chr15 45123850 45127366 3517 * character(0) NA 0 NA 0.307 1 NA NA NA NA NA LTS-008 chr15 45127367 67664610 22537244 * c(MIR147B, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, NDUFAF4P1, MIR2116, MIR4311, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4511, MIR4712, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, SLC27A2, LACTB, DIS3L, LEO1, MTFMT, SLC51B, TERB2, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, MGC15885, LCTL, FBN1, FGF7, CEP152, ZNF609, DMXL2, AP4E1, NA NA NA NA NA NA NA NA NA LTS-008 DAPK2, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, BLOC1S6, GATM, FOXB1, HMGN2P46, SLC24A5, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, USP50, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, LIPC, SHC4, CTXN2, DUOXA2, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, DUOX2, MYEF2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, DUOX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, FLJ10038, MNS1, MYO5C, MAPK6, MAP2K1, FAM214A, DTWD1, IGDCC4, SQRDL, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, RFX7, SLC12A1, BNIP2, SNX1, HSP90AB4P, SORD, SCARNA14, MIR628, TCF12, TPM1, CA12, SLC30A4, SPATA5L1, ICE2, AAGAB, SLTM, SNX22, ATP8B4, SEMA6D, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TLN2, FAM96A, C15orf48, MEGF11, CILP, SPPL2A, CGNL1, RAB11A, ALDH1A2, HERC1, SHF, DUOXA1, USP8, CCNB2, SLC28A2, SLC24A1, CCPG1, GCNT3, LDHAL6B, COPS2, TRIP4, PIGB, IGDCC3, SECISBP2L, KIAA0101, USP3) 0.257844647049157 279 0.0650376689163421 0.532333966643709 18392 0.143097419323094 1 1 0 -6.92252917860359 LTS-008 NA NA NA NA LTS-008 chr15 67664611 102516492 34851882 * c(NR2E3, FAM138E, DNM1P35, NA, UBE2Q2P2, LINC00930, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR1469, MIR548H4, MIR4312, MIR3175, MIR4313, NA, UBE2Q2L, IQCH-AS1, LINC00933, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, MIR4714, SPATA8-AS1, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, FEM1B, AP3S2, HMG20A, CORO2B, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, NA NA NA NA NA NA NA NA NA LTS-008 ABHD2, CHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, SENP8, TARSL2, HIGD2B, LRRC28, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, ASB7, CSK, LYSMD4, PGPEP1L, LINC00924, DRAIC, C15orf61, C15orf32, HAPLN3, MESP2, SPATA8, NRG4, LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ADAMTS17, ACAN, SCAMP5, DNM1P46, CT62, GRAMD2, CERS3, ETFA, FAH, ALDH1A3, FES, ITGA11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CHSY1, TBC1D2B, MESDC2, ACSBG1, KIAA1024, SYNM, TMED3, SEC11A, GABARAPL3, SPESP1, LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, VPS33B, MRPL46, OR4F4, NPTN, SLCO3A1, EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, FAM169B, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ZNF774, IGF1R, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 KIF7, ZNF710, HDDC3, WASH3P, C15orf59, GOLGA2P7, UBE2Q2P1, SPATA41, SKOR1, ANKRD34C, GDPGP1, OR4F6, OR4F15, OR4F13P, ADAMTS7P1, ST20, FAM174B, LINC01197, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2A2, MAN2C1, LINC00593, MEF2A, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, MYO9A, NEO1, NMB, NTRK3, SCAPER, FURIN, PCSK6, HDGFRP3, NGRN, RHCG, PDE8A, PKM, BTBD1, TM6SF1, PLIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PML, POLG, ZFAND6, SCAND2P, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZSCAN2, DET1, UACA, LINS1, FANCI, IMP3, LARP6, DNAJA4, MCTP2, SELENOS, GOLGA6B, MESP1, UNC45A, MAP2K5, PSMA4, C15orf39, THAP10, RGMA, WDR93, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, CELF6, RPLP1, BLM, STRA6, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, IQCH, ISL2, EFTUD1P1, TTC23, MRPS11, GOLGA6C, GOLGA6D, SNRPA1, SCARNA15, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, NR2F2, TLE3, HSP90B2P, AGBL1-AS1, ASB9P1, LOC729739, ANKRD34C-AS1, TYRO3P, NOX5, EFL1, NEIL1, LRRK1, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, TM2D3, WDR61, CD276, STARD5, AP3B2, ANP32A, ST8SIA2, LINC00597, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PIAS1, PEX11A, IQGAP1, TICRR, PSTPIP1, PRC1, RCCD1, LOC91450, SLC28A1, CALML4, ARRDC4, LINC00923, UBE2Q2, COX5A, STOML1, HOMER2, KIF23, ZNF592, SV2B, ARNT2) 0.247876776128547 501 0.069969013044541 0.551388437934921 24961 0.159403625246773 1 1 0 -7.03089442937662 LTS-008 NA NA NA NA LTS-008 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.816 1 NA NA NA NA NA LTS-008 chr16 81704 81779 76 * character(0) 0.21 1 NA 1.33 1 NA NA NA NA NA LTS-008 chr16 81780 1278744 1196965 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSG1, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, NA NA NA NA NA NA NA NA NA LTS-008 MCRIP2, RGS11, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.439945849040299 84 0.0852162877115448 0.814273098385002 3602 0.189975095451233 2 1 1 -6.76287110151338 LTS-008 NA NA NA NA LTS-008 chr16 1278745 1278767 23 * TPSB2 0.277 1 NA 2.291 1 NA NA NA NA NA LTS-008 chr16 1278768 1291639 12872 * c(TPSB2, TPSAB1) 0.262431331613133 11 0.104368403438798 1.0091649858964 36 0.486224668006239 5 4 1 -6.7421168855411 LTS-008 chr16 1291640 1306355 14716 * c(TPSD1, TPSAB1) 0.463 1 NA 0.868593703009229 17 0.177550614158992 2 2 0 -5.76653178433252 LTS-008 chr16 1306356 2653223 1346868 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, NA NA NA NA NA NA NA NA NA LTS-008 UNKL, LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, UBE2I, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.433841003264009 82 0.0937436016084155 0.806508742867881 4479 0.196341114613098 2 1 1 -6.74254406535229 LTS-008 NA NA NA NA LTS-008 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.314 1 NA NA NA NA NA LTS-008 chr16 2672647 2747930 75284 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.33 1 NA 0.557670315054565 83 0.382517987261908 1 1 0 -5.76468072995098 LTS-008 chr16 2747931 31512077 28764147 * c(MIR365A, LOC100128770, SRRM2-AS1, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, ATP2A1-AS1, MIR762, MIR3179-2, MIR548X, MTRNR2L4, MIR3180-4, MIR548AA2, LCMT1-AS2, LINC01569, NAGPA-AS1, SLX1B-SULT1A4, CORO7-PAM16, MIR4718, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, SNX29P1, TMEM265, ZNF263, TRAP1, COQ7, IGSF6, BCKDK, CACNG3, CDR2, CD2BP2, CDIPT, ERN2, SRCAP, PRSS21, CORO1A, PRRT2, ERI2, ATXN2L, STX1B, NA NA NA NA NA NA NA NA NA LTS-008 SGF29, FLYWCH2, VASN, ADCY9, ZNF689, SLC5A11, RMI2, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, ZG16B, PRSS30P, PAQR4, GPR139, ANKS3, UBALD1, SEPT12, TMEM219, EARS2, COX6A2, CREBBP, CRYM, VWA3A, OTOA, TEKT5, C16orf92, GSG1L, ZNF597, BICDL2, ZNF785, ZNF688, PRSS36, C16orf89, C16orf71, CTF1, ITPRIPL2, C16orf82, SEPT1, DNASE1, ABAT, EEF2KMT, NLRC3, NSMCE1, ZNF48, EMP2, PDILT, ERCC4, ALDOA, SEPHS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PDXDC1, SMG1, CLUAP1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, CLEC16A, MGRN1, ZNF629, NOMO1, QPRT, SRRM2, CARHSP1, IL27, FUS, KCTD13, ASPHD1, MPV17L, PDZD9, ANKS4B, TMEM186, SH2B1, TBC1D10B, PRSS33, PYDC1, ZNF500, RSL1D1, OR1F2P, SEZ6L2, NUPR1, LAT, TNRC6A, GP2, NOMO2, LINC00514, LINC00921, IL21R-AS1, C16orf54, INO80E, FBXL19-AS1, ZNF843, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, PYCARD, GSPT1, GTF3C1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 UBN1, MYLPF, EEF2K, CDIP1, HMOX2, PKD1P1, PRSS53, C16orf96, ZKSCAN2, AQP8, ACSM2B, IL4R, PRSS41, ABCC6, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC7A5P2, SBK1, BCAR4, KNOP1, CRYM-AS1, FLJ21408, NOMO3, MAZ, MEFV, CIITA, ABCC1, SMIM22, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, MYH11, NUBP1, NDUFAB1, ATP2A1, TRIM72, OR1F1, OR2C1, IL21R, PARN, PAM16, TXNDC11, METTL9, NAGPA, BFAR, TNFRSF12A, ZNF771, LCMT1, GDE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 GPRC5B, SYT17, PHKG2, PLK1, PMM2, KCTD5, FBXL19, RRN3, RBFOX1, NDE1, SLX1A, ZSCAN32, PPL, HCFC1R1, ACSM5, ARHGAP17, BOLA2, PPP4C, CPPED1, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, MAPK3, ALG1, UBFD1, PRM1, PRM2, PRSS8, C16orf62, TMEM159, LYRM1, NMRAL1, MIR193B, USP31, MKL2, PRM3, RBBP6, SMG1P5, LOC606724, TNFRSF17, LOC613037, LOC613038, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, SRL, CHP2, PRSS22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SMG1P1, XYLT1, NPIPA3, FBRS, MMP25, C16orf90, C16orf58, SLC5A2, ABCC6P1, RRN3P2, LOC653786, ZG16, ZNF747, SPN, SNORA30, SULT1A2, STX4, SULT1A1, SULT1A3, TBX6, TCEB2, MIR548D2, TFAP4, TGFB1I1, TNP2, CLEC19A, TUFM, SHISA9, ABCC6P2, RRN3P1, C16orf52, LOC730183, UMOD, UQCRC2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, ZP2, TVP23A, USP7, PRR14, VKORC1, DCTPP1, METTL22, GDPD3, THOC6, KREMEN2, PAGR1, CORO7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ROGDI, ZNF768, PALB2, ZNF668, ARMC5, KDM8, TMC5, RABEP2, NAA60, TMC7, ATF7IP2, HSD3B7, LOC81691, ZNF205-AS1, SLC7A5P1, SNN, YPEL3, FAM57B, PRSS27, SPNS1, PLA2G10, KAT8, FLYWCH1, NUDT16L1, SLX4, DOC2A, DCTN5, GLYR1, GLIS2, HIRIP3, ZSCAN10, NFATC2IP, SOCS1, C16orf45, CLDN6, CLDN9, CCDC189, PKMYT1, DNAJA3, TIGD7, COG7, SNX29, IL32, ZNF764, BCL7C, NPIPA1, CD19, ORAI3, TAOK2, LITAF, KIAA0430, SEC14L5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZNF646, CCP110, SETD1A, RNF40, HS3ST4, HS3ST2, MVP) 0.433955392831494 449 0.0954880292961591 0.799008702444495 24670 0.286911351335108 2 1 1 -6.74162517617362 LTS-008 NA NA NA NA LTS-008 chr16 31512078 31518980 6903 * C16orf58 NA 0 NA 0.675 1 NA NA NA NA NA LTS-008 chr16 31518981 31987905 468925 * c(CLUHP3, ZNF267, ZNF720, YBX3P1, AHSP, C16orf58) 0.439995574975477 15 0.0510426525657942 0.701377120792427 300 0.208638667559232 2 1 1 -6.89039427359593 LTS-008 chr16 31987906 31993291 5386 * character(0) NA 0 NA 1.054 1 NA NA NA NA NA LTS-008 chr16 31993292 33786477 1793186 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.359379589021213 19 0.0748357265275903 1.06941339217604 200 0.453980677178287 3 2 1 -6.76077972437194 LTS-008 chr16 33786478 33815806 29329 * character(0) NA 0 NA 0.477 1 NA NA NA NA NA LTS-008 chr16 33815807 33961418 145612 * LINC00273 0.4183832040514 8 0.0756220631070816 0.779745747358312 24 0.293022022716897 2 1 1 -6.73731436620812 LTS-008 chr16 33961419 33961439 21 * LINC00273 0.212 1 NA 0.986 1 NA NA NA NA NA LTS-008 chr16 33961440 33965646 4207 * LINC00273 0.326245431864778 61 0.102995657503027 0.679825341545958 99 0.271484594355132 4 3 1 -6.7737228999974 LTS-008 chr16 33965647 34682380 716734 * c(LINC01566, UBE2MP1) NA 0 NA 0.784482162713176 117 0.197811997125798 2 NA NA -5.76681624777551 LTS-008 chr16 46508169 46602819 94651 * ANKRD26P1 0.486 1 NA 0.794221778068122 95 0.227470011805945 2 2 0 -5.76441677911111 LTS-008 chr16 46602820 70161298 23558479 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00919, LINC00920, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, ADCY7, CMTM1, NRN1L, CMTM3, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, CYLD, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, NA NA NA NA NA NA NA NA NA LTS-008 ZNF423, RPGRIP1L, CES3, ARL2BP, ORC6, EDC4, PLA2G15, CNEP1R1, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, PHKB, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, HEATR3, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, VPS35, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, PDF, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SHCBP1, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, CYB5B, ITFG1, GFOD2, NETO2, LONP2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, GPT2, B3GNT9, UTP4, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 NOL3, RSPRY1, SLC7A6, ATP6V0D1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1, CDH1) 0.443037110038993 369 0.0676308850225347 0.762141730284076 16447 0.483114020130955 2 1 1 -6.89150806359095 LTS-008 NA NA NA NA LTS-008 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.396 1 NA NA NA NA NA LTS-008 chr16 70162673 70211364 48692 * c(CLEC18C, PDPR) 0.472 1 NA 0.498467896550682 106 0.172092252574677 1 1 0 -5.77113644574996 LTS-008 chr16 70211365 70219715 8351 * CLEC18C NA 0 NA 0.856 1 NA NA NA NA NA LTS-008 chr16 70219716 70680850 461135 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, DDX19A, ST3GAL2, SNORD111) 0.439570536625204 9 0.0246069095987286 0.760953429651043 935 0.149840839024948 2 1 1 -6.97693906228707 LTS-008 chr16 70680851 70690956 10106 * IL34 0 1 NA 0.821542170443714 15 0.281313466913098 2 2 0 -5.76448547971478 LTS-008 chr16 70690957 70871792 180836 * c(VAC14-AS1, IL34, HYDIN, VAC14, MTSS1L) 0.175898420846653 2 0.325269119345812 0.754129172678627 293 0.209055901678592 2 2 0 -6.74043134802374 LTS-008 chr16 70871793 70874035 2243 * HYDIN NA 0 NA 0.907 1 NA NA NA NA NA LTS-008 chr16 70874036 71167220 293185 * HYDIN 0.366838851003912 87 0.0452689577431492 1.07064915551763 551 0.355494027372856 3 2 1 -6.75314839297427 LTS-008 chr16 71167221 71196616 29396 * HYDIN NA 0 NA 0.938930931444176 15 0.0800086304868478 3 NA NA -5.79921002927015 LTS-008 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.836 1 NA NA NA NA NA LTS-008 chr16 71209484 71218926 9443 * HYDIN 0.454 1 NA 0.751143026821529 15 0.165560433506491 2 2 0 -5.76511078633811 LTS-008 chr16 71218927 90161231 18942305 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, AFG3L1P, NA NA NA NA NA NA NA NA NA LTS-008 DHODH, DPEP1, SNAI3-AS1, LINC00311, LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, HYDIN, DEF8, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, GAS8-AS1, ZNF19, ZNF23, CA5A, DBNDD1, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.443992768069036 312 0.0670932276424521 0.756268196252512 12920 0.338848840911535 2 1 1 -7.03457072203027 LTS-008 NA NA NA NA LTS-008 chr16 90161232 90161242 11 * character(0) NA 0 NA 0.899 1 NA NA NA NA NA LTS-008 chr17 6004 31208 25205 * DOC2B 0.422 1 NA 0.745381115179705 33 0.235841349312317 2 2 0 -5.76559162259618 LTS-008 chr17 31209 9487754 9456546 * c(LOC100128288, C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, NA NA NA NA NA NA NA NA NA LTS-008 RTN4RL1, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DPH1, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RPA1, RPL26, SRR, NXN, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, SCARF1, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.160290371283266 371 0.0538800043612127 0.816894436094437 15966 0.236287358065746 2 2 0 -6.87959772525164 LTS-008 NA NA NA NA LTS-008 chr17 9487755 9489084 1330 * CFAP52 NA 0 NA 1.114 1 NA NA NA NA NA LTS-008 chr17 9489085 15469181 5980097 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, USP43, COX10, CDRT15, CFAP52, DNAH9, DHRS7C, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, PMP22, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, GAS7, MYH13, GLP2R, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.153633500965312 66 0.0591307665470993 0.848262516764143 3522 0.221741582036516 2 2 0 -7.1307084718885 LTS-008 chr17 15469182 15517342 48161 * c(TRIM16, CDRT1) 0.2097467026489 6 0.0742897480589796 0.591436868674841 156 0.361813969308949 2 2 0 -6.84635943603651 LTS-008 chr17 15517343 15518945 1603 * c(TRIM16, CDRT1) NA 0 NA 0.696 1 NA NA NA NA NA LTS-008 chr17 15518946 21117589 5598644 * c(FAM106CP, LOC100287072, MIR1288, MIR1180, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, TRIM16, RAI1, GRAP, AKAP10, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, SLC47A2, TRIM16L, USP32P1, DRG2, CENPV, FLCN, PLD6, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, MPRIP, USP22, TNFRSF13B, TBC1D28, CDRT15L2, DHRS7B, SNORD49A, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, CDRT1, NA NA NA NA NA NA NA NA NA LTS-008 LRRC75A, LLGL1, KRT16P2, GRAPL, MEIS3P1, MFAP4, TVP23B, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, SLC47A1, MAPK7, PRPSAP2, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, FAM83G, KRT16P3, EVPLL, SHMT1, LGALS9C, SREBF1, SNORA59A, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, ZNF286B, UBB, RNF112, GID4, FAM106A, DRC3, COPS3, TMEM11, ATPAF2, SPECC1, PIGL, NCOR1, ULK2, CCDC144A) 0.169332113603648 128 0.0680195356809496 0.814477351760059 6653 0.446339487240326 2 2 0 -6.75680114814066 LTS-008 NA NA NA NA LTS-008 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.386 1 NA 0.721500611518596 33 0.184522530857181 2 2 0 -5.77757397351225 LTS-008 chr17 21194770 21202237 7468 * MAP2K3 0.39332725182976 9 0.122766829577229 0.961577099756294 34 0.339626553847651 3 2 1 -6.7466171079588 LTS-008 chr17 21202238 21202272 35 * MAP2K3 0.435 1 NA 1.071 1 NA NA NA NA NA LTS-008 chr17 21202273 21318663 116391 * c(KCNJ12, MAP2K3) 0.378167171849637 64 0.0795001731429681 1.12471632580741 133 0.408390853612314 3 2 1 -6.73588249970159 LTS-008 chr17 21318664 21318698 35 * KCNJ12 0.267 1 NA 1.434 1 NA NA NA NA NA LTS-008 chr17 21318699 21320365 1667 * KCNJ12 0.297956222811884 29 0.069971633942979 1.39271742275432 78 0.548522927595467 11 8 3 -6.73731502050764 LTS-008 chr17 21320366 21320422 57 * KCNJ12 NA 0 NA 0.939 1 NA NA NA NA NA LTS-008 chr17 21320423 22066835 746413 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.292856586669238 15 0.105594011374203 0.828445111549081 208 0.22587448537381 2 2 0 -7.36286228959196 LTS-008 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-008 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.181 1 NA 0.807336922864501 17 0.197448690282103 2 2 0 -5.76443860479383 LTS-008 chr17 25630389 27999132 2368744 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-008 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.158790314676449 35 0.0455305235136669 0.835443622974589 4187 0.181129562010631 2 2 0 -6.960745676659 LTS-008 NA NA NA NA LTS-008 chr17 27999133 28001004 1872 * SSH2 NA 0 NA 0.76 1 NA NA NA NA NA LTS-008 chr17 28001005 34432761 6431757 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-008 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.173167110183963 108 0.0774216293300999 0.782507595228888 5991 0.233675358201043 2 2 0 -6.75900142391198 LTS-008 NA NA NA NA LTS-008 chr17 34432762 34432860 99 * CCL4 NA 0 NA 0.699 1 NA NA NA NA NA LTS-008 chr17 34432861 34640930 208070 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.369856589776325 38 0.389039069479908 0 NA NA -5.81754843873238 LTS-008 chr17 34640931 34640942 12 * c(CCL4L1, NA) NA 0 NA 1.849 1 NA NA NA NA NA LTS-008 chr17 34640943 36214044 1573102 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.135142256344756 18 0.0927741653243724 0.77402317471345 1540 0.210892463145204 2 2 0 -6.88774324452203 LTS-008 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.384 1 NA NA NA NA NA LTS-008 chr17 36214814 36462656 247843 * c(YWHAEP7, LOC440434, MRPL45) 0.109255136824414 3 0.057974132162543 0.58072754616687 94 0.31540256493635 3 3 0 -7.34723128748274 LTS-008 chr17 36462657 36474566 11910 * MRPL45 NA 0 NA 0.807 1 NA NA NA NA NA LTS-008 chr17 36474567 36625579 151013 * c(SOCS7, GPR179, ARHGAP23, MRPL45) 0.157857638276951 7 0.0375004761874528 0.907471317583801 348 0.18419034567802 3 3 0 -6.97877283253446 LTS-008 chr17 36625580 36626046 467 * ARHGAP23 NA 0 NA 0.791 1 NA NA NA NA NA LTS-008 chr17 36626047 41424101 4798055 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, RAMP2-AS1, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, STARD3, TMEM106A, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, KRT28, KRT24, ZNF385C, NA NA NA NA NA NA NA NA NA LTS-008 ERBB2, EZH1, CASC3, IKZF3, KCNH4, GAST, G6PC, KRT23, KAT2A, TUBG2, CCR10, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, MSL1, KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, MLLT6, NAGLU, ACLY, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 NEUROD2, FBXO47, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, KLHL11, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, DHX58, PLEKHH3, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, VPS25, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, PGAP3, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.171895780662576 155 0.0544451750314582 0.810115964716604 10644 0.224904282509626 2 2 0 -6.76380837897866 LTS-008 NA NA NA NA LTS-008 chr17 41424102 41465877 41776 * LINC00910 0.482 1 NA 0.687975770656645 26 0.235008202802829 2 2 0 -5.77407779389833 LTS-008 chr17 41465878 41599383 133506 * c(LINC00910, MIR2117, DHX8, ARL4D) 0.371240760641935 9 0.121126426146862 0.712527243868384 149 0.171284200510317 2 1 1 -6.88003488310321 LTS-008 chr17 41599384 41603882 4499 * DHX8 0.112 1 NA 0.645832633962721 11 0.174486363103513 1 1 0 -5.76716655335915 LTS-008 chr17 41603883 44159945 2556063 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2 NA NA NA NA NA NA NA NA NA LTS-008 ) 0.172077565363775 48 0.0381134399983869 0.822671299153652 3871 0.200296679570057 2 2 0 -6.80036448110124 LTS-008 NA NA NA NA LTS-008 chr17 44159946 44172017 12072 * character(0) NA 0 NA 1.806 1 NA NA NA NA NA LTS-008 chr17 44172018 44364336 192319 * character(0) NA 0 NA 1.20180030009439 73 0.539090270042213 4 NA NA -5.76714046487902 LTS-008 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.003 1 NA NA NA NA NA LTS-008 chr17 44408492 44782233 373742 * character(0) NA 0 NA 0.448143541842383 41 0.360210341667063 1 NA NA -5.82554894533128 LTS-008 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.805 1 NA NA NA NA NA LTS-008 chr17 44788332 45198343 410012 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.10603681377669 6 0.0957280871357339 0.794471973911369 270 0.222377604154925 2 2 0 -7.07252514904443 LTS-008 chr17 45198344 45214473 16130 * CDC27 0.317 1 NA 0.702814021995106 21 0.14481211143771 2 2 0 -5.77158110455061 LTS-008 chr17 45214474 45266571 52098 * CDC27 0.350145959685695 18 0.0848098218507323 0.628568827472412 95 0.186518036799425 3 2 1 -7.01276029660454 LTS-008 chr17 45266572 45385012 118441 * c(ITGB3, MYL4, CDC27) 0.095 1 NA 0.799024610522282 119 0.175129631113814 2 2 0 -5.76443964052081 LTS-008 chr17 45385013 47905162 2520150 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, NA NA NA NA NA NA NA NA NA LTS-008 FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1) 0.169543933517126 38 0.0673704066541488 0.785563336978007 3498 0.337522345591105 2 2 0 -6.75019288371474 LTS-008 NA NA NA NA LTS-008 chr17 47905163 56676869 8771707 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, KAT7, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, DLX3, DLX4, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, OR4D1, LOC284080, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, NA NA NA NA NA NA NA NA NA LTS-008 TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, FLJ45513, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.159930553807754 108 0.0449407209262305 0.82336838984607 5664 0.240798742801294 2 2 0 -6.95248357574733 LTS-008 NA NA NA NA LTS-008 chr17 56676870 67512916 10836047 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, NA NA NA NA NA NA NA NA NA LTS-008 APOH, LRRC37A3, KPNA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, FAM20A, BCAS3, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.158255124269581 87 0.0563974065768213 0.778776019127062 7930 0.205914079471078 2 2 0 -6.89592063756067 LTS-008 NA NA NA NA LTS-008 chr17 67512917 67513003 87 * MAP2K6 0.121 1 NA 1.43 1 NA NA NA NA NA LTS-008 chr17 67513004 80363378 12850375 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, NA NA NA NA NA NA NA NA NA LTS-008 TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, CBX8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.157750477941671 317 0.0534945652394944 0.82308045874502 14337 0.249204316175324 2 2 0 -6.97028734496171 LTS-008 NA NA NA NA LTS-008 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.793 1 NA NA NA NA NA LTS-008 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.17994663745852 2 0.0056568542494924 1.5782810293817 39 0.582441285926708 2 2 0 -6.75277461450214 LTS-008 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.642 1 NA NA NA NA NA LTS-008 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.163529733192488 31 0.0322473638165708 0.785658312642943 889 0.210261703793692 2 2 0 -6.8895085754159 LTS-008 chr17 81050983 81083625 32643 * METRNL NA 0 NA 0.866574980926556 13 0.117962945072834 2 NA NA -5.77449648517938 LTS-008 chr18 116845 122072 5228 * ROCK1P1 0.415 1 NA 0.85087987925247 49 0.235512680739521 2 2 0 -5.76465977668789 LTS-008 chr18 122073 3451768 3329696 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.447359916143831 41 0.0441402559476262 0.779174009412631 1591 0.221332778821626 2 1 1 -6.90958561927224 LTS-008 chr18 3451769 8546022 5094254 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, TGIF1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.438408865781801 48 0.0913820500865142 0.891563205229416 1652 0.229267614716338 2 1 1 -7.41207167171846 LTS-008 chr18 8546023 14866503 6320481 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.426434095842669 86 0.0799570130745795 0.832791920899183 3340 0.983652485697048 2 1 1 -6.74131659687697 LTS-008 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.839611614862709 33 0.243591288656 2 NA NA -5.76839263505298 LTS-008 chr18 18529727 18533554 3828 * ROCK1 0.486 1 NA 0.69770364517142 35 0.10912188082117 2 2 0 -5.76776967625025 LTS-008 chr18 18533555 56203411 37669857 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, LINC-ROR, ACAA2, ZNF271P, MAPRE2, POLI, ESCO1, OSBPL1A, HAUS1, ALPK2, LOXHD1, INO80C, TTC39C, PSMA8, STARD6, C18orf25, SLC25A52, DSG4, AQP4-AS1, ANKRD29, C18orf54, NA NA NA NA NA NA NA NA NA LTS-008 TCEB3C, DCC, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, FECH, TRAPPC8, NEDD4L, WDR7, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, CABYR, GATA6, SNORD58B, SNORD58A, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ST8SIA5, C18orf8, CXXC1, AQP4, CCDC178, LAMA3, MIR1-2, MIR122, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, NARS, NPC1, RNF165, C18orf32, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ATP5A1, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ELP2, IMPACT, ELAC1, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, EPG5, RAB27B, RBBP8, HRH4, RIT2, ROCK1, RPL17, KC6, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SNRPD1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, GREB1L, FHOD3, CCDC68, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, MRO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 HDHD2, ZNF397, TMEM241, NOL4, RIOK3, MBD2, PSTPIP2, PIAS2, CABLES1, B4GALT6, TXNL1, LIPG, ONECUT2, CTIF) 0.436209695423749 254 0.0855426716658634 0.855178508086946 13917 0.280494528224701 2 1 1 -7.93941514255984 LTS-008 NA NA NA NA LTS-008 chr18 56203412 56203447 36 * ALPK2 0.44 1 NA 1.397 1 NA NA NA NA NA LTS-008 chr18 56203448 56420803 217356 * c(MALT1, ALPK2) 0.274119757829513 9 0.24110739884495 0.850498146148594 287 0.433205270218489 2 2 0 -6.82587864010544 LTS-008 chr18 56420804 56420830 27 * character(0) 0.469 1 NA 1.63 1 NA NA NA NA NA LTS-008 chr18 56420831 63549109 7128279 * c(CDH7, LINC01544, CCBE1, RNF152, LINC00305, PHLPP1, PIGN, KDSR, CDH20, HMSD, LOC284294, GRP, RAX, CPLX4, OACYLP, LMAN1, LINC01538, MC4R, SERPINB2, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, SEC11C, VPS4B) 0.431503520563885 82 0.104248560039938 0.842675483920951 2717 0.635044636511694 2 1 1 -6.76975849131933 LTS-008 chr18 63549110 63552400 3291 * character(0) NA 0 NA 1.17714324917401 77 1.97104956583477 4 NA NA -5.76441559585553 LTS-008 chr18 64168349 64749020 580672 * c(MIR5011, CDH19) 0.232118160785804 4 0.151634154024305 0.627692782245907 149 0.237627353655917 1 1 0 -6.89272653037122 LTS-008 chr18 64749021 65173806 424786 * character(0) NA 0 NA 1.12 1 NA NA NA NA NA LTS-008 chr18 65173807 77917450 12743644 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, DSEL, SOCS6, ZNF516) 0.453480678206773 89 0.0455253776504326 0.835008918816903 3453 0.191486190576292 2 1 1 -7.40690670467507 LTS-008 chr18 77917451 78005362 87912 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.781925919221351 55 0.136351785568101 2 NA NA -5.765335675414 LTS-008 chr19 107416 327182 219767 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.287 1 NA 1.01787290470527 83 0.190629882189398 3 3 0 -5.76811987287462 LTS-008 chr19 327183 7585215 7258033 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, TUBB4A, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, NA NA NA NA NA NA NA NA NA LTS-008 CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ADGRE1, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SLC39A3, GZMM, ADGRE4P, ADAMTSL5, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, ONECUT3, MEX3D, PRSS57, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, FLJ25758, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PSPN, PRTN3, AZU1, NCLN, GPR108, SPPL2B, DUS3L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SHD, PTBP1, WDR18, REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, TLE6, PLPPR3, DENND1C, ZNF556, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.297592486586394 324 0.068387507297034 1.04470512870508 12211 0.32579125360734 3 2 1 -7.41952106631761 LTS-008 NA NA NA NA LTS-008 chr19 7585216 8399849 814634 * c(PET100, TGFBR3L, CLEC4M, TIMM44, PNPLA6, EVI5L, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, FCER2, KANK3, CD209, CLEC4G, LYPLA2P2, CTXN1, CLEC4GP1, NDUFA7, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, SNAPC2, STXBP2, CERS4, LRRC8E, PRR36, FBN3) 0.281483171314338 73 0.0818708425228625 1.08557564777651 1894 0.335242383619985 4 3 1 -6.92563561930449 LTS-008 chr19 8399850 8400651 802 * KANK3 0.375 1 NA 0.90865627669704 19 0.381259838335334 2 2 0 -5.76446786846586 LTS-008 chr19 8400652 11727881 3327230 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, RAB11B-AS1, ZNF559-ZNF177, AP1M2, MIR4748, MIR4999, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, OR7D4, OR7G1, OR1M1, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF558, ZNF846, OR7D2, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK3, KANK2, TSPAN16, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, NA NA NA NA NA NA NA NA NA LTS-008 C3P1, OR7G2, OR7G3, LDLR, MIR199A1, MYO1F, HNRNPM, P2RY11, COL5A3, RDH8, MRPL4, ANGPTL4, MARCH2, ECSIT, PDE4A, PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, ADAMTS10, QTRT1, ANGPTL6, PRAM1, ZNF414, ELOF1, ZNF559, ATG4D, MBD3L1, EIF3G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 C19orf52, RAB11B, S1PR2, ZNF561, OLFM2, MUC16, RAB3D, KEAP1) 0.322290319012112 125 0.0643465416269969 1.10178619651644 6641 0.330885744490749 3 2 1 -7.1517938695009 LTS-008 NA NA NA NA LTS-008 chr19 11727882 12757494 1029613 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, MAN2B1, ZNF44, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.303189316474215 42 0.0923686655921545 1.00464684321218 1710 0.345061362508559 4 3 1 -7.07004938590206 LTS-008 chr19 12757495 19770774 7013280 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, NA NA NA NA NA NA NA NA NA LTS-008 SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 IL27RA, GDF15, TECR, IER2, ADGRE5) 0.329957027780236 267 0.0716210105177808 1.10882649402023 12376 0.334467875424486 3 2 1 -7.06801438931426 LTS-008 NA NA NA NA LTS-008 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.631 1 NA NA NA NA NA LTS-008 chr19 19772755 23545168 3772414 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.328411590989501 43 0.0837173764165136 0.938399052929717 1265 0.327532552294162 3 2 1 -7.17285226492151 LTS-008 chr19 23545169 23845016 299848 * c(ZNF675, ZNF91) NA 0 NA 0.949323471297348 59 0.133172561117081 3 NA NA -5.86754897488212 LTS-008 chr19 23845017 23845915 899 * ZNF675 NA 0 NA 1.037 1 NA NA NA NA NA LTS-008 chr19 23845916 24345121 499206 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.05269890259404 253 0.350212789992987 3 NA NA -5.76441684454052 LTS-008 chr19 28247625 29704002 1456378 * c(LINC01532, LINC00906, LINC00662, UQCRFS1) 0.31 1 NA 1.36916250412065 23 0.378466580518241 4 4 0 -5.77810561786587 LTS-008 chr19 29704003 40376832 10672830 * c(HPN-AS1, LINC01531, LOC100129935, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, THEG5, UBA2, MIR4530, LOC100631378, LINC00904, MIR5196, UPK1A-AS1, IFNL4, PAK4, TMEM147, CEBPA, CEBPG, SPINT2, DLL3, POP4, HCST, UPK1A, SLC7A9, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, WDR88, EID2B, WTIP, ZNF792, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, DPY19L3, LGALS16, NA NA NA NA NA NA NA NA NA LTS-008 ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, LGI4, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, FBL, ETV2, ZFP30, ZNF507, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, EIF3K, GPI, IFNL2, IFNL3, IFNL1, LOC284395, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR1, FFAR3, FFAR2, LGALS13, HNRNPL, HPN, APLP1, ZNF181, ZNF260, VSTM2B, ZNF850, NCCRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, RGS9BP, KRTDAP, ZNF790, NUDT19, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LOC400684, LOC400685, LGALS17A, LRP3, MAG, NFKBIB, NPHS1, ATP4A, ZNF571, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, PAF1, SARS2, GPATCH1, SAMD4B, MED29, PSENEN, ZNF302, LIN37, SLC7A10, LGALS14, PSMD8, TSHZ3, LRFN1, GRAMD1A, ZFP14, ZNF529, HAMP, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SCN1B, C19orf33, CCER2, SCGB1B2P, CHST8, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, UQCRFS1, USF2, ZFP36, ZNF146, KCTD15, PLEKHF1, RBM42, LRFN3, IGFLR1, CEBPA-AS1, ACTN4, DPF1, CAPNS1, C19orf12, WDR87, KIRREL2, ANKRD27, PDCD2L, ZNF527, ZNF607, NFKBID, CEP89, ZNF382, ZNF566, ALKBH6, RHPN2, URI1, FCGBP, CCNE1, ZNF30, YIF1B, PDCD5, FAAP24, DYRK1B, TDRD12, ZNF461, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZNF585B, TIMM50, DMKN, CD22, NA, KCNK6, PPP1R14A, GMFG, KIAA0355, ZNF536, KMT2B) 0.443043375877781 227 0.0800669379521839 1.25269184872666 11625 0.316150118947399 4 2 2 -6.87346369589815 LTS-008 NA NA NA NA LTS-008 chr19 40376833 40376849 17 * FCGBP NA 0 NA 1.594 1 NA NA NA NA NA LTS-008 chr19 40376850 40399881 23032 * FCGBP 0.426 1 NA 0.797156196437566 39 0.335604146353904 2 2 0 -5.76441031949414 LTS-008 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.768 1 NA NA NA NA NA LTS-008 chr19 40405935 52133720 11727786 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, NA NA NA NA NA NA NA NA NA LTS-008 LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, KLK11, HNRNPUL1, CLASRP, KPTN, KLK8, EGLN2, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CLDND2, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, C19orf47, CRX, VSIG10L, C19orf84, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, CCDC155, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AP2A1, DBP, ZNF296, DEDD2, ZNF114, ZNF780B, SPACA4, DMPK, DMWD, MEGF8, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, AKT2, ETFB, FCGRT, ATF5, CARD8, CYP2G1P, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, SIGLEC7, LYPD3, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 EHD2, FOXA3, HRC, PRMT1, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, KCNA7, KCNC3, B3GNT8, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIM2, LIPE, SIGLEC16, LOC400710, IGLON5, BCAM, MIR150, MAP3K10, KLK14, KLK12, PSG8, MIR330, IGFL4, MYBPC2, CEACAM6, ATP1A3, NKG7, NOVA2, NPAS1, NTF4, NUCB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PAFAH1B3, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, RAB4B, POLD1, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, AXL, SMG9, IRGC, CABP5, PRRG2, KLK7, KLK6, KLK10, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, PSMC4, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, PRX, SPTBN4, MARK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RPS19, RRAS, RTN2, CLEC11A, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, VASP, XRCC1, ZNF45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF175, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, COQ8B, CNTD2, FUZ, OPA3, ITPKC, B9D2, CALM3, RSPH6A, MED25, SYMPK, MIA, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, SYT3, AKT1S1, CNFN, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, FCGBP, SIGLEC10, SIGLEC12, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 CEACAM21, CCDC97, EXOC3L2, CTU1, ARHGEF1, NUMBL, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34, CD79A) 0.43067838951578 438 0.0951652361182872 1.23122214553757 20819 0.390704582967211 4 2 2 -6.89067535571526 LTS-008 NA NA NA NA LTS-008 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 2.13 1 NA NA NA NA NA LTS-008 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.478076252185108 2 0.00424264068711929 2.03768053574169 39 0.784122966925762 6 3 3 -17.2203945418042 LTS-008 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 1.32 1 NA NA NA NA NA LTS-008 chr19 52196825 53770270 1573446 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.460859057774155 54 0.0360096510473714 1.18261078484331 2029 0.236174821964474 4 2 2 -7.45308925538636 LTS-008 chr19 53770271 53770286 16 * VN1R4 NA 0 NA 1.652 1 NA NA NA NA NA LTS-008 chr19 53770287 53818565 48279 * c(BIRC8, VN1R4, FAM90A27P) 0.405178921343774 4 0.120370262108213 1.54080199321817 99 0.472197518846491 5 3 2 -6.73305732778648 LTS-008 chr19 53818566 53818589 24 * character(0) NA 0 NA 0.79 1 NA NA NA NA NA LTS-008 chr19 53818590 54264405 445816 * c(MIR1283-2, MIR1323, MIR1283-1, ZNF813, TPM3P9, ZNF525, LOC284379, ZNF761, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, NA NA NA NA NA NA NA NA NA LTS-008 MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, ZNF765, ZNF845) 0.428972641073857 22 0.0929265874190517 1.09326976900002 681 0.324005133968114 4 2 2 -6.81376249334527 LTS-008 NA NA NA NA LTS-008 chr19 54264406 54290920 26515 * c(MIR516A2, MIR519A2) NA 0 NA 1.391 1 NA NA NA NA NA LTS-008 chr19 54290921 54310961 20041 * c(MIR371B, MIR372, MIR373, NLRP12) 0.435617488667376 4 0.0258376340506118 1.32953457026182 54 0.685439914951766 4 2 2 -6.84334234572762 LTS-008 chr19 54310962 54447006 136045 * c(PRKCG, CACNG7, NLRP12, MYADM) 0 1 NA 1.27660108920205 263 0.337916964121091 4 4 0 -5.76477403211616 LTS-008 chr19 54447007 54635154 188148 * c(MIR935, OSCAR, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CACNG8, CACNG6) 0.293113972362467 9 0.241899830049088 1.23836126635877 469 0.453457529721666 4 3 1 -6.73594603319126 LTS-008 chr19 54635155 54645150 9996 * CNOT3 0.475 1 NA 1.15274182534384 5 0.251885291353028 3 3 0 -5.76521778609347 LTS-008 chr19 54645151 59082368 4437218 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, MIR4752, RNU6-64P, TRIM28, ZNF256, LILRB2, ZNF211, TRAPPC2B, ZNF274, ZNF460, LILRB1, LILRB5, SLC27A5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, RDH13, U2AF2, ZIM3, LENG8, KIR3DL3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, TMC4, ZNF524, ZNF784, NA NA NA NA NA NA NA NA NA LTS-008 NLRP4, ZNF542P, ZNF582, ZNF583, CDC42EP5, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, FKBP1AP1, PPP6R1, LILRA4, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, LILRA5, IL11, ZNF773, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ZNF749, ZNF324B, LAIR1, LAIR2, ZNF805, ZNF772, CNOT3, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, TTYH1, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, RPS9, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, TSEN34, MBOAT7, ZSCAN5A, LENG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LILRP2, LILRA6, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, KIR3DX1, ZNF551, UBE2M, ZNF835, LENG9, ZNF264, NCR1) 0.428684913289215 323 0.0782059333397276 1.22543240543884 9204 0.423113367055452 4 2 2 -6.79411828567529 LTS-008 NA NA NA NA LTS-008 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 1.09929063041147 15 0.107146895162002 3 NA NA -5.76458258222342 LTS-008 chr20 68260 76962 8703 * DEFB125 0.368 1 NA 1.13774389649881 11 0.269838941862465 3 3 0 -5.76486157038881 LTS-008 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.360388832289794 68 0.0527152700146068 1.11338221509769 1951 0.305893486990009 3 2 1 -6.81051924285268 LTS-008 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.071 1 NA NA NA NA NA LTS-008 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0606341816765794 39 0.0260846747422746 0 NA NA -14.3498943123876 LTS-008 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.111 1 NA NA NA NA NA LTS-008 chr20 1600391 26188981 24588591 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100134868, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, NA NA NA NA NA NA NA NA NA LTS-008 CST1, CST2, CST3, CST4, CST5, PRNT, LINC00654, C20orf196, NCOR1P1, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SNX5, GNRH2, LOC284788, LOC284798, FAM182A, MIR663AHG, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PCSK2, CRNKL1, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SNORD17, SNORD110, TGM3, THBD, MIR663A, LINC01433, FAM182B, ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.344597105722057 347 0.0761946605286874 1.14040473346677 12606 0.321460257017612 3 2 1 -7.65459187778506 LTS-008 NA NA NA NA LTS-008 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.837697828628974 3 0.0236713610367746 2 NA NA -5.76451528081132 LTS-008 chr20 29625845 29625876 32 * FRG1BP 0.351 1 NA 1.304 1 NA NA NA NA NA LTS-008 chr20 29625877 29652219 26343 * c(MLLT10P1, FRG1BP) 0.331269305921585 15 0.0859766302688175 0.845311150498645 46 0.35236037766581 4 3 1 -6.81376239463935 LTS-008 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 1.17 1 NA NA NA NA NA LTS-008 chr20 29845417 62872290 33026874 * c(ADA, ACOT8, MCTS2P, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, LOC100287792, MIR1914, MIR1257, MIR4325, MIR3194, MIR3193, MIR4326, MIR3196, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, TGIF2-C20orf24, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR499B, MIR4756, MIR4758, MIR4532, MIR4533, MIR4755, MIR5095, LINC00659, NA NA NA NA NA NA NA NA NA LTS-008 ATP9A, LINC00489, HM13-AS1, TRERNA1, SGK2, RBM12, ARFRP1, OGFR-AS1, MMP24-AS1, RGS19, SYCP2, MYL9, WFDC2, CEBPB, PROCR, ARFGEF2, TCFL5, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, ADRM1, OGFR, UBE2C, DIDO1, PTPRT, PKIG, CEP250, HRH3, PXMP4, TP53RK, RBPJL, CHRNA4, DNTTIP1, FAM210B, PHACTR3, DEFB118, BHLHE23, NKAIN4, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, DUSP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, COL9A3, GATA5, SLC32A1, BPIFA2, ZBTB46, WFDC3, GCNT7, NOL4L, CBLN4, CTCFL, MROH8, SAMD10, ABHD16B, CCM2L, SOGA1, TLDC2, RIMS4, SUN5, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, LINC00028, FAM65C, RBBP8NL, CNBD2, R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, LOC149950, COMMD7, BPIFB4, LSM14B, CTSZ, CYP24A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 WFDC13, APCDD1L, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, EDN3, AHCY, EEF1A2, LKAAEAR1, FAM209A, EPB41L1, EYA2, DLGAP4, RALY, MAPRE1, TPX2, ZHX3, NCOA6, FOXS1, SLC9A8, ADNP, POFUT1, ZMYND8, SPO11, PRPF6, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf166-AS1, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, SS18L1, PPP1R16B, TRPC4AP, MTG2, GMEB2, SNORD12C, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MOCS3, GNAS, WFDC10B, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, C20orf203, REM1, GSS, HCK, HNF4A, BPIFA4P, LOC339568, ID1, ARHGAP40, XKR7, BPIFB3, EIF6, KCNB1, KCNG1, KCNQ2, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, LAMA5, SPINT4, SUMO1P1, LBP, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ASIP, ZFAS1, MYBL2, MYT1, NFATC2, NNAT, NTSR1, OPRL1, STMN3, SLC35C2, PRELID3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PCK1, IFT52, PHF20, SCAND1, BPIFA1, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, ERGIC3, CDK5RAP1, RTEL1, PFDN4, PI3, PLAGL2, PLCG1, PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, UQCC1, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, ARFGAP1, EDEM2, DOK5, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, SLC2A4RG, PSMA7, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, NDRG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIR499A, SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, MYH7B, PTPN1, NCOA5, TP53INP2, RPRD1B, RBL1, BCL2L1, TGIF2, CDH26, KCNK15, DHX35, RPN2, RPS21, SDC4, MANBAL, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, NECAB3, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, SNTA1, SPAG4, BPI, SRC, SRMS, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, TAF4, TCEA2, SNORD12, MIR644A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIR645, MIR647, TFAP2C, TGM2, TNNC2, TOP1, TPD52L2, UBE2V1, YWHAB, SYS1-DBNDD2, HAR1A, HAR1B, MKRN7P, ZNF217, GDAP1L1, LINC01260, FNDC11, PPDPF, TTPAL, BIRC7, NPEPL1, ACTR5, DSN1, DNAJC5, PABPC1L, BPIFB2, TUBB1, ZBP1, SLC2A10, HM13, PDRG1, FAM83D, CABLES2, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, PARD6B, ZGPAT, COX4I2, RAE1, ZNF341, TOX2, MYLK2, BCAS1, HELZ2, KIAA1755, STX16, TNFRSF6B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MATN4, DPM1, WISP2, EIF2S2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, CBFA2T2, VAPB, BPIFB1, B4GALT5, KIF3B, CD40, RBM39, TTI1, TM9SF4, SPATA2, OSBPL2, MAFB) 0.242796001803108 621 0.0646397041383904 1.11731194717235 31118 0.315343089719735 3 3 0 -8.69723972839349 LTS-008 NA NA NA NA LTS-008 chr20 62872291 62903688 31398 * c(MYT1, PCMTD2) NA 0 NA 1.04715574449998 47 0.188968172975715 3 NA NA -5.76441705546545 LTS-008 chr20 62903689 62904595 907 * PCMTD2 NA 0 NA 0.794 1 NA NA NA NA NA LTS-008 chr20 62904596 62959313 54718 * c(LINC00266-1, PCMTD2) NA 0 NA 0.93650097094817 71 0.489088206402333 3 NA NA -5.76623427723271 LTS-008 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.289 1 NA 0.467450366009801 29 0.319861011225912 1 1 0 -5.77469667513931 LTS-008 chr21 9907223 11059877 1152655 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.386404711739696 29 0.0766452547382526 0.814245753052227 149 0.49873699569624 2 1 1 -6.87863945144398 LTS-008 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.972369231820147 6 0.512016275782974 3 NA NA -5.76494771209279 LTS-008 chr21 14745307 14917181 171875 * MIR3156-3 0.488 1 NA 0.722872672658265 53 0.333997354699553 2 2 0 -5.77302239623878 LTS-008 chr21 14917182 15988325 1071144 * c(SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.449113976825119 11 0.037310490847384 0.761641202480327 368 0.190678963023297 2 1 1 -7.01921590975066 LTS-008 chr21 15988326 15991856 3531 * LOC388813 NA 0 NA 1.053 1 NA NA NA NA NA LTS-008 chr21 15991857 48063476 32071620 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, ITGB2-AS1, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, RNU6-67P, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, BTG3, HSF2BP, ADAMTS5, LINC00310, LINC00313, NA NA NA NA NA NA NA NA NA LTS-008 B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CHODL, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, USP25, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 KCNE1, KCNJ6, KCNJ15, PICSAR, LINC00317, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, LINC00114, LSS, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, LOC642852, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, NRIP1, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.440938992142511 513 0.0721589047647918 0.839980817449004 18812 0.460940076986054 2 1 1 -7.01338516456896 LTS-008 NA NA NA NA LTS-008 chr21 48063477 48084993 21517 * PRMT2 NA 0 NA 0.718729024434359 77 0.159131447232441 2 NA NA -5.76974465334475 LTS-008 chr22 16157787 16157827 41 * character(0) 0.421 1 NA 0.254 1 NA NA NA NA NA LTS-008 chr22 16157828 20307253 4149426 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-008 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.419035020777723 161 0.102389030598773 0.844264085532421 4517 0.269086148347625 2 1 1 -6.8506715068486 LTS-008 NA NA NA NA LTS-008 chr22 20307254 20307256 3 * DGCR6L 0.441 1 NA 0.266 1 NA NA NA NA NA LTS-008 chr22 20307257 20717934 410678 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0.451052250689824 3 0.0681469001496032 0.490656230616724 41 0.156692564456957 2 1 1 -8.55961017540561 LTS-008 chr22 20717935 22681765 1963831 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, VPREB1, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, BMS1P20) 0.435992968873068 61 0.101222095257439 0.826271554189091 2529 0.237376746085128 2 1 1 -6.7694858402925 LTS-008 chr22 22681766 22707388 25623 * character(0) 0.356 1 NA 0.957608780438786 23 0.267615890451472 3 3 0 -5.76626673274225 LTS-008 chr22 22707389 22906678 199290 * c(ZNF280A, ZNF280B, PRAME, LL22NC03-63E9.3) 0.346047906219244 25 0.0945667841616001 0.863313606770717 304 0.700579291430832 3 2 1 -6.79831797875136 LTS-008 chr22 22906679 22909014 2336 * LL22NC03-63E9.3 0.46 1 NA 0.876509240488014 50 0.289006397076294 2 2 0 -5.76456511477375 LTS-008 chr22 22909015 39358478 16449464 * c(DDTL, LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, IGLL5, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, ELFN2, C1QTNF6, SGSM1, EMID1, ANKRD54, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, NA NA NA NA NA NA NA NA NA LTS-008 CSF2RB, CSNK1E, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, TMPRSS6, DDT, RNF215, APOBEC3A, EWSR1, MORC2, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CABIN1, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, GSTTP1, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, POM121L1P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TXN2, TMEM184B, GGA1, FBXW4P1, SEC14L3, RGL4, GGT1, GGT5, INPP5J, CYTH4, RSPH14, GNAZ, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, CARD10, UQCR10, VPREB3, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, IGLL1, IL2RB, KCNJ4, SDC4P, LRRC75B, LOC391322, LGALS1, LGALS2, LIF, LIMK2, CHCHD10, LOC400927, SRRD, MB, MCM5, MFNG, MIF, MMP11, MN1, MPST, PIWIL3, MIAT, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 DRICH1, EIF3L, RTCB, MTFP1, UPB1, POLR2F, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, PVALB, RAC2, RFPL1, BCR, BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, CES5AP1, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SMARCB1, SLC2A11, SNRPD3, SOX10, SSTR3, TCN2, TIMP3, TOP1P2, MIR650, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, ZNF70, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SYN3, GUCD1, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, HPS4, GGTLC2, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, ISX, LARGE1, PICK1, GAL3ST1, GTPBP1, RAB36, DEPDC5, SFI1, JOSD1) 0.438651205773693 446 0.0677494529205841 0.816675915262715 17487 0.227049367526134 2 1 1 -6.88054829047724 LTS-008 NA NA NA NA LTS-008 chr22 39358479 39358525 47 * c(APOBEC3A_B, APOBEC3A) NA 0 NA 0.432 1 NA NA NA NA NA LTS-008 chr22 39358526 39388084 29559 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) NA 0 NA 0.364843913963817 41 0.129467610602505 0 NA NA -5.82539034237113 LTS-008 chr22 39388085 39388100 16 * c(APOBEC3A_B, APOBEC3B) NA 0 NA 0.576 1 NA NA NA NA NA LTS-008 chr22 39388101 42522997 3134897 * c(LOC100130899, NDUFA6-AS1, MIR1281, LOC100506472, MIR4766, APOBEC3A_B, TAB1, SLC25A17, TOB2, FAM83F, TNFRSF13C, APOBEC3D, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, APOBEC3H, WBP2NL, POLR3H, APOBEC3F, EP300, TNRC6B, ZC3H7B, CBX7, XRCC6, SNORD43, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, LINC00634, MIR33A, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, PDGFB, PMM1, MIEF1, SEPT3, MKL1, RANGAP1, NA NA NA NA NA NA NA NA NA LTS-008 APOBEC3G, RPL3, XPNPEP3, SREBF2, ST13, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, APOBEC3B, RBX1) 0.452929364636835 69 0.0674631218131364 0.801585007457933 5245 0.244254167094024 2 1 1 -6.83963439210716 LTS-008 NA NA NA NA LTS-008 chr22 42522998 42523373 376 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 1.187 1 NA NA NA NA NA LTS-008 chr22 42523374 42896795 373422 * c(NDUFA6-AS1, NFAM1, CYP2D7, CYP2D6, OGFRP1, TCF20, SERHL) 0.380236870844197 18 0.0557569714859142 0.919536829466191 413 0.282465720150695 3 2 1 -6.78793010840766 LTS-008 chr22 42896796 42898652 1857 * SERHL NA 0 NA 1.238 1 NA NA NA NA NA LTS-008 chr22 42898653 42914773 16121 * c(RRP7A, SERHL) 0.375441393167635 3 0.0141067359796659 1.14198022069608 90 0.236907000669655 3 2 1 -6.73469876269959 LTS-008 chr22 42914774 42915645 872 * RRP7A NA 0 NA 0.678 1 NA NA NA NA NA LTS-008 chr22 42915646 51045077 8129432 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, NA NA NA NA NA NA NA NA NA LTS-008 PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, LINC00229, DENND6B, PIM3, ODF3B, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.438344965458362 220 0.0773230697731057 0.822862449091746 7661 0.206485777354479 2 1 1 -6.87419813011967 LTS-008 NA NA NA NA LTS-008 chr22 51045078 51206426 161349 * c(RABL2B, MAPK8IP2, RPL23AP82, ARSA, ACR, SHANK3) 0.446458428136991 7 0.0204834427909819 0.757206589792375 309 0.241141994478942 2 1 1 -7.36111566659006 LTS-008 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.628297422780645 49 0.0963607080423435 1 NA NA -5.78498377608402 LTS-008 chrX 2699993 2800295 100303 * c(XG, GYG2) 0.173 1 NA 0.556969922185726 129 0.162041114148288 1 1 0 -5.76625174949147 LTS-008 chrX 2800296 11790426 8990131 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4, GYG2) 0.227175893921031 41 0.0904251610786376 0.582783646396603 2600 0.168682737340893 1 1 0 -7.71930417477423 LTS-008 chrX 11790427 11790798 372 * MSL3 NA 0 NA 0.382 1 NA NA NA NA NA LTS-008 chrX 11790799 13790718 1999920 * c(GS1-600G8.3, LINC01203, MSL3, TCEANC, FAM9C, EGFL6, GPM6B, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.212617032149159 14 0.038939019668544 0.524235128465965 1079 0.135186917478769 1 1 0 -7.72022870217495 LTS-008 chrX 13790719 13790776 58 * GPM6B NA 0 NA 0.555 1 NA NA NA NA NA LTS-008 chrX 13790777 47004923 33214147 * c(SUPT20HL1, PHKA2-AS1, LOC100132831, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, NA NA NA NA NA NA NA NA NA LTS-008 MAP7D2, KLHL34, TAB3, HYPM, GK, GPR82, GLRA2, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, GRPR, SH3KBP1, CA5BP1, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAP3K15, LOC392452, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, OTC, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, NDUFB11, PPEF1, BCOR, GEMIN8, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, TMEM27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MID1IP1, ACE2, RBBP7, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, ZNF674, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, DYNLT3, TSPAN7, LINC01545, LOC729609, KDM6A, XK, ZFX, APOO, S100G, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, ZRSR2, USP9X, RBM10, TMEM47, SRPX, SLC9A7, PIR, INE2, CASK, AP1S2, RGN, REPS2, MED14, SYAP1, SYTL5, PCYT1B, JADE3) 0.248480030552022 139 0.0739648221244165 0.568471862869205 12483 0.14481275315054 1 1 0 -8.44784161872387 LTS-008 NA NA NA NA LTS-008 chrX 47004924 47006712 1789 * RBM10 NA 0 NA 0.655 1 NA NA NA NA NA LTS-008 chrX 47006713 57622607 10615895 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MTRNR2L10, MIR4769, MIR4536-1, HUWE1, PQBP1, SSX3, TIMM17B, RRAGB, EBP, MAGED2, PIM2, WDR45, PRAF2, KLF8, CLCN5, DGKK, FOXR2, PAGE3, USP27X-AS1, FAAH2, ZXDB, RIBC1, USP51, SPIN3, XAGE3, XAGE5, NUDT10, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, APEX2, PCSK1N, SSX6, SSX7, SSX8, SSX9, NA NA NA NA NA NA NA NA NA LTS-008 CCDC22, MAGEH1, UBQLN2, HSD17B10, ERAS, ZNF81, ITIH6, ARAF, KCND1, SPACA5, USP27X, PAGE2B, CXXC1P1, GLOD5, PRICKLE3, MIRLET7F2, MIR188, MIR98, UQCRBP1, SPIN2B, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PFKFB1, PLP2, GPR173, SPIN2A, GNL3L, FAM120C, LINC01420, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 SNORA11, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, TRO, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, SMC1A, UXT, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, BMP15, SLC38A5, MAGED1, PAGE4) 0.22945207171627 76 0.0920957587076073 0.586103664564156 8973 0.146510560092666 1 1 0 -8.2720403385917 LTS-008 NA NA NA NA LTS-008 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 0.539938829784054 126 0.142271597406409 1 NA NA -5.76447835426032 LTS-008 chrX 61999880 65175802 3175923 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278) 0.488 1 NA 0.578938344794218 963 0.131280532514634 1 1 0 -6.22416259787747 LTS-008 chrX 65175803 101473106 36297304 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, MIR676, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, VSIG4, DACH2, COX7B, MAP2K4P1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, NA NA NA NA NA NA NA NA NA LTS-008 YIPF6, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 ATRX, ERCC6L, GDPD2, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, STARD8, ARMCX2, HEPH, MED12) 0.247612741515852 92 0.0887187695298443 0.577871328288601 12210 0.401627617205423 1 1 0 -7.28042707586077 LTS-008 NA NA NA NA LTS-008 chrX 101473107 101609294 136188 * character(0) NA 0 NA 0.385 1 NA NA NA NA NA LTS-008 chrX 101609295 101625090 15796 * character(0) NA 0 NA 0.159585425544988 39 0.237204646949449 0 NA NA -5.82161962974174 LTS-008 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.634 1 NA NA NA NA NA LTS-008 chrX 101768565 117054395 15285831 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, NA NA NA NA NA NA NA NA NA LTS-008 GLRA4, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.210536399282445 56 0.085105679148789 0.578169642198395 6788 0.153278780996866 1 1 0 -8.30480281822433 LTS-008 NA NA NA NA LTS-008 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.493 1 NA NA NA NA NA LTS-008 chrX 117079357 139793912 22714556 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, NA NA NA NA NA NA NA NA NA LTS-008 GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 MMGT1, RAB33A, ARHGEF6, CD40LG) 0.241092020702389 112 0.0791602564633681 0.561332165946461 9507 0.223349048577088 1 1 0 -7.12361424626985 LTS-008 NA NA NA NA LTS-008 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 0.701 1 NA NA NA NA NA LTS-008 chrX 139795670 153707202 13911533 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, NA NA NA NA NA NA NA NA NA LTS-008 GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, LINC00632, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-008 PDZD4, OPN1LW, RENBP, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, LAGE3, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.239903769773078 90 0.0843573961614574 0.589145840777165 7330 0.158584375955671 1 1 0 -8.53168895641192 LTS-008 NA NA NA NA LTS-008 chrX 153707203 153707343 141 * LAGE3 NA 0 NA 0.451 1 NA NA NA NA NA LTS-008 chrX 153707344 154507173 799830 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, IKBKG) 0.249280594288612 5 0.0458879069036713 0.549259728291789 1277 0.134203901497083 1 1 0 -6.80616964337221 LTS-008 chrX 154507174 154774986 267813 * c(CLIC2, TMLHE) NA 0 NA 0.529445382241928 109 0.794957852397223 1 NA NA -5.7645369259221 LTS-008 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.537332087192759 25 0.17906113481155 1 NA NA -5.76513896507463 LTS-008 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.928642086193611 25 0.616019718299125 3 NA NA -5.94853855773437 LTS-008 chr1 65893 878314 812422 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.316 1 NA 0.857483650415739 87 0.318967622221538 2 2 0 -5.79093946589795 LTS-009 chr1 878315 1607033 728719 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.20745789017982 27 0.0633688834098833 0.830863846678037 2927 0.280307400874133 2 2 0 -6.75185641969244 LTS-009 chr1 1607034 1635759 28726 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.144941225572733 3 0.132578278763906 0.288870655305704 57 0.366022546280915 3 3 0 -6.94896739728474 LTS-009 chr1 1635760 1646772 11013 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.106152243715972 65 0.104045404289888 0 NA NA -6.50211694645446 LTS-009 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.52 1 NA NA NA NA NA LTS-009 chr1 1647807 1683014 35208 * c(NADK, CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.253275159646861 15 0.0866128221014704 0.258033549162446 151 0.193768614202325 1 1 0 -7.24025994327018 LTS-009 chr1 1683015 2013953 330939 * c(CALML6, GABRD, GNB1, TMEM52, PRKCZ, NADK, CFAP74) 0.242693177121688 2 0.0424264068711929 0.791916927184464 523 0.24887624215858 2 2 0 -6.97807031783546 LTS-009 chr1 2013954 2066666 52713 * PRKCZ NA 0 NA 1.227 1 NA NA NA NA NA LTS-009 chr1 2066667 2342387 275721 * c(LOC100129534, RER1, FAAP20, PEX10, PRKCZ, SKI, MORN1) 0.24029186600016 7 0.0401307387232803 0.953907736183536 518 0.311481226840248 2 2 0 -7.01741426922395 LTS-009 chr1 2342388 2343886 1499 * PEX10 NA 0 NA 0.556 1 NA NA NA NA NA LTS-009 chr1 2343887 3397617 1053731 * c(NA, TTC34, MIR4251, LOC115110, FAM213B, ACTRT2, ARHGEF16, HES5, LINC00982, PEX10, PANK4, PRDM16, MMEL1, TNFRSF14, PLCH2) 0.229911800726318 37 0.0586972048896867 0.70503221608009 1015 0.236799003299799 2 2 0 -6.93256272237406 LTS-009 chr1 3397618 16360189 12962572 * c(LINC01134, NPPA-AS1, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, ACOT7, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, TPRG1L, CORT, C1orf127, PHF13, CCDC27, C1orf64, SLC2A7, DFFA, DFFB, MEGF6, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, ICMT, MTOR, CHD5, NPHP4, FBXO2, NA NA NA NA NA NA NA NA NA LTS-009 FBXO6, HSPB7, ARHGEF16, LOC284661, SLC25A34, UBIAD1, ZBTB48, C1orf174, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, TNFRSF9, DRAXIN, CENPS, GPR153, SMIM1, RNF207, TMEM82, HES3, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, FBLIM1, CASZ1, TMEM51, VPS13D, DNAJC11, AJAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, MIR551A, TNFRSF1B, TP73, LINC01346, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, NOL9, AGMAT, GPR157, SPSB1, TAS1R1, ESPN, CASP9, SLC25A33, DDI2, LZIC, KCNAB2, TNFRSF25, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 TNFRSF8, H6PD, CEP104, KLHL21, MFN2) 0.227205179548929 276 0.0751149892323638 0.819404467170313 12796 0.370623464200938 2 2 0 -6.7965124937921 LTS-009 NA NA NA NA LTS-009 chr1 16360190 16360200 11 * c(CLCNKA, CLCNKB) NA 0 NA 0.633 1 NA NA NA NA NA LTS-009 chr1 16360201 16362659 2459 * c(CLCNKA, CLCNKB) 0.45 1 NA 0.362307233623469 40 0.296830517990075 0 0 0 -5.76446458893252 LTS-009 chr1 16362660 16577779 215120 * c(CLCNKB, ARHGEF19, EPHA2, FAM131C, FBXO42, RSG1) 0.256053726072993 28 0.110713749785356 0.926456938259953 546 0.266284596959621 2 2 0 -6.85606369740968 LTS-009 chr1 16577780 16802533 224754 * c(CROCCP3, SZRD1, SPATA21, FBXO42, NECAP2) 0.24244432804466 15 0.0711612521638273 0.76932744239088 325 0.359477820482437 2 2 0 -6.82203391644847 LTS-009 chr1 16802534 16862454 59921 * CROCCP3 0.414 1 NA 0.81770863225416 11 0.238636467532445 2 2 0 -5.76487309241012 LTS-009 chr1 16862455 16975363 112909 * c(MST1P2, NBPF1, CROCCP2) 0.339544948562459 15 0.130549826284286 0.649991337104798 79 0.300833600046994 1 1 0 -6.7989791102841 LTS-009 chr1 16975364 16975753 390 * MST1P2 NA 0 NA 0.266 1 NA NA NA NA NA LTS-009 chr1 16975754 16978916 3163 * MST1P2 0.213046347430915 9 0.139196902902966 0.295996688067264 77 0.538131935978047 2 2 0 -6.73955277453474 LTS-009 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.208 1 NA NA NA NA NA LTS-009 chr1 17009684 17033928 24245 * ESPNP 0.457372667811687 7 0.0241985831934729 1.22901586312743 105 0.378463893739507 4 2 2 -7.05760032075286 LTS-009 chr1 17033929 17198553 164625 * c(MST1L, ESPNP, CROCC) 0.276063806912868 21 0.122022090115645 0.778460922322752 190 0.358765098778246 1 1 0 -6.83175722341284 LTS-009 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.755 1 NA NA NA NA NA LTS-009 chr1 17248433 17273444 25012 * CROCC 0.434715915308768 7 0.0288146787989336 1.79669659066595 74 0.639196119217458 9 5 4 -6.73735398003661 LTS-009 chr1 17273445 17280937 7493 * CROCC NA 0 NA 1.47717215972324 23 0.469433010959664 5 NA NA -5.76441014139435 LTS-009 chr1 17280938 17281198 261 * CROCC NA 0 NA 0.859 1 NA NA NA NA NA LTS-009 chr1 17281199 17282573 1375 * CROCC 0.227 1 NA 0.899263677775641 17 0.139132184292069 2 2 0 -5.76504551165306 LTS-009 chr1 17282574 18024039 741466 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, CROCC) 0.23542752710613 28 0.0463643695298962 0.881333834370683 1146 0.910086570172737 2 2 0 -6.8526439835662 LTS-009 chr1 18024040 19186250 1162211 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21) 0.225367881934429 14 0.0409086358061044 0.639295235645372 427 0.239018170572483 2 2 0 -7.30621279975228 LTS-009 chr1 19186251 19197897 11647 * character(0) NA 0 NA 1.057 1 NA NA NA NA NA LTS-009 chr1 19197898 21625613 2427716 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.206620507018611 78 0.0508256439924384 0.859101707728105 3537 0.34231982200916 2 2 0 -6.82118516236448 LTS-009 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.259 1 NA NA NA NA NA LTS-009 chr1 21749805 21755696 5892 * character(0) 0.254335924837855 3 0.047247574893674 0.429348116390837 53 0.367141010744758 9 7 2 -6.82533039358941 LTS-009 chr1 21755697 29842556 8086860 * c(MIR1976, MIR3115, MIR4253, MIR3917, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, PTPRU, CELA3A, WASF2, HNRNPR, SRRM1, CNKSR1, CD52, GMEB1, NUDC, RCC1, RCAN3, LYPLA2, RAB42, FAM46B, KDF1, CNR2, MYOM3, ZNF436-AS1, PDIK1L, IFNLR1, PAQR7, E2F2, FAM76A, EPB41, EPHA8, EPHB2, EXTL1, EYA3, FGR, DNAJC8, KDM1A, WDTC1, CELA3B, TMEM50A, STX12, ALPL, FUCA1, IFI6, ZNF683, GALE, MDS2, CLIC4, SYF2, LDLRAP1, RNU11, NA NA NA NA NA NA NA NA NA LTS-009 AHDC1, SMPDL3B, SFN, GPR3, LOC284632, LINC00339, HMGN2, HMGCL, HSPG2, HTR1D, ID3, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, NCMAP, LDLRAD2, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, WNT4, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, ASAP3, PNRC2, PIGV, MTFR1L, RSRP1, PITHD1, MAN1C1, NIPAL3, SELENON, PTAFR, GRHL3, IL22RA1, RAP1GAP, RHCE, RHD, RPA2, RPL11, RPS6KA1, GPATCH3, SRSF4, ACTG1P20, LOC646471, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, TCEA3, SNORA16A, SNORD99, TCEB3, C1QA, C1QB, C1QC, C1orf234, SLC30A2, LUZP1, AUNIP, LIN28A, FAM110D, DHDDS, ZNF436, ARID1A, SH3BGRL3, SESN2, TMEM222, USP48, SNHG3, NBPF3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, RUNX3, STPG1, MAP3K6, UBXN11, ATPIF1, THEMIS2, ZBTB40, CDC42) 0.222406404337588 225 0.0554500883821415 0.816561269714192 11481 0.307822158807788 2 2 0 -6.7772253243322 LTS-009 NA NA NA NA LTS-009 chr1 29842557 32677777 2835221 * c(MATN1-AS1, MIR4254, MIR4420, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, FABP3, KPNA6, LINC01226, HCRTR1, SERINC2, MATN1, ZCCHC17, TMEM39B, PEF1, IQCC, ADGRB2, TINAGL1, SNORD103C, SNORD103A, LAPTM5, CCDC28B, NKAIN1, PTP4A2, SPOCD1, SNRNP40, SDC3, PUM1) 0.218797549601448 59 0.0550886008631674 0.893350464606153 2396 0.305337358762333 2 2 0 -6.97009784159139 LTS-009 chr1 32677778 32678038 261 * DCDC2B NA 0 NA 0.713 1 NA NA NA NA NA LTS-009 chr1 32678039 37261422 4583384 * c(FAM229A, MIR3605, TMEM35B, SMIM12, AZIN2, TMEM54, CSMD2, GJB4, HMGB4, RNF19B, A3GALT2, OSCP1, C1orf216, COL8A2, CSF3R, DCDC2B, ZNF362, PHC2, AGO3, AGO4, AK2, NCDN, FNDC5, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, GRIK3, HDAC1, HPCA, MTMR9LP, ZBTB8OS, TFAP2E, LCK, CSMD2-AS1, ADPRHL2, BSDC1, EVA1B, TRIM62, MAP7D1, TMEM234, PSMB2, KIAA1522, DLGAP3, RBBP4, CLSPN, SFPQ, S100PBP, MRPS15, MARCKSL1, ZBTB8A, NA NA NA NA NA NA NA NA NA LTS-009 LOC653160, ZBTB8B, ZSCAN20, SH3D21, ZMYM1, KIAA0319L, SYNC, TSSK3, STK40, FAM167B, LSM10, C1orf94, YARS, EIF3I, ZMYM4, ZMYM6, THRAP3) 0.245363391330222 70 0.0727438513477441 0.797869334056922 5503 0.284874129622587 2 2 0 -6.83585614334797 LTS-009 NA NA NA NA LTS-009 chr1 37261423 37319408 57986 * GRIK3 NA 0 NA 0.545967050878226 175 0.135319884955493 1 NA NA -5.76766384967394 LTS-009 chr1 37319409 37324702 5294 * GRIK3 NA 0 NA 0.868 1 NA NA NA NA NA LTS-009 chr1 37324703 43875498 6550796 * c(LOC100129924, NFYC-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, MED8, ERMAP, TMCO2, ZNF684, C1orf122, TMEM125, COL9A2, MANEAL, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, SZT2, MACF1, MYCBP, HEYL, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, ZFP69, BMP8A, INPP5B, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, NA NA NA NA NA NA NA NA NA LTS-009 FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, PPT1, HIVEP3, RLF, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, MEAF6, EXO5, ELOVL1, SLC2A1, ZFP69B, BMP8B, SNORA55, TIE1, LINC01137, PPIEL, CCDC30, DNALI1, C1orf50, AKIRIN1, YRDC, PPCS, SNIP1, ZC3H12A, ZMYND12, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3, CDC20) 0.22176625948921 113 0.0493934847938051 0.786424097979043 7388 0.275021709981951 2 2 0 -6.75158224226128 LTS-009 NA NA NA NA LTS-009 chr1 43875499 43875705 207 * SZT2 NA 0 NA 1.047 1 NA NA NA NA NA LTS-009 chr1 43875706 44088594 212889 * c(SZT2, PTPRF, HYI) 0.208917030188491 9 0.0436147910690857 0.935578434456759 643 0.292736925671389 2 2 0 -6.7835019200628 LTS-009 chr1 44088595 47284663 3196069 * c(EFCAB14-AS1, KDM4A-AS1, MKNK1-AS1, MIR5584, TSPAN1, AKR1A1, TESK2, LRRC41, KIF2C, TOE1, PLK3, CCDC163, DMBX1, KLF17, KNCN, MOB3C, CCDC24, BTBD19, CCDC17, CYP4B1, DPH2, FAAH, MAST2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, IPP, TEX38, NSUN4, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, ATPAF1, ST3GAL3, SLC6A9, RPS15AP10, FAAHP1, UQCRH, NA NA NA NA NA NA NA NA NA LTS-009 UROD, ERI3, TMEM53, HECTD3, RAD54L, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14) 0.225233504323895 47 0.0617552014235863 0.80543468094746 4533 0.269040481599378 2 2 0 -6.75317712491714 LTS-009 NA NA NA NA LTS-009 chr1 47284664 47615447 330784 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0.114 1 NA 0.607107616332027 332 0.237899271003116 1 1 0 -5.77907823722255 LTS-009 chr1 47615448 47649301 33854 * c(LINC00853, PDZK1IP1) NA 0 NA 1.053 1 NA NA NA NA NA LTS-009 chr1 47649302 53514231 5864930 * c(MIR761, PDZK1IP1, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, RNF11, C1orf185, GPX7, FAM159A, TRABD2B, SKINT1L, ZYG11A, NRDC, ORC1, TXNDC12, CMPK1, SPATA6, ECHDC2, RAB3B, SCP2, DMRTA2, STIL, COA7, TAL1, BEND5, ZYG11B, FOXD2-AS1, AGBL4, PRPF38A, BTF3L4, ZFYVE9) 0.212927205846548 63 0.0670654165519474 0.775385876386663 4085 0.335282068501524 2 2 0 -6.75480588459599 LTS-009 chr1 53514232 65145313 11631082 * c(LINC01135, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, ALG6, FAM151A, JUN, MROH7, LDLRAD1, TACSTD2, MAGOH, MGC34796, NFIA, ROR1, MRPL37, HOOK1, HSPB11, NA NA NA NA NA NA NA NA NA LTS-009 PGM1, YIPF1, L1TD1, C1orf123, TTC22, FGGY, PRKAA2, NDC1, CACHD1, CYB5RL, SCP2, DMRTB1, SLC1A7, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, PLPP3, TMEM59) 0.236577860132027 152 0.0744259967998511 0.849772892680401 6414 0.328086777646876 2 2 0 -7.04928594233015 LTS-009 NA NA NA NA LTS-009 chr1 65145314 71872235 6726922 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, ZRANB2-AS2, HHLA3, CTH, IL23R, GADD45A, TCTEX1D1, AK4, SLC35D1, NEGR1, SERBP1, IL12RB2, JAK1, LEPR, C1orf141, MIR101-1, MIR186, PDE4B, PIN1P1, LEPROT, RAVER2, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.219199910859656 71 0.0610285350680756 0.779473501956548 3946 0.325300084846817 2 2 0 -6.75230763112831 LTS-009 chr1 71872236 71872289 54 * NEGR1 NA 0 NA 0.673 1 NA NA NA NA NA LTS-009 chr1 71872290 75688081 3815792 * c(FPGT-TNNI3K, NEGR1-IT1, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, NEGR1, LHX8, TNNI3K, FPGT) 0.235914604516276 23 0.0478522511974518 0.689149228064016 1104 0.289265790925308 2 2 0 -7.36471671058707 LTS-009 chr1 75688082 89301916 13613835 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, LINC01140, ACADM, CYR61, MIGA1, UOX, LINC01555, MSH4, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, NA NA NA NA NA NA NA NA NA LTS-009 RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.209196302462183 103 0.0593148503778558 0.835475620676892 5402 1.06147429563371 2 2 0 -6.75586876883368 LTS-009 NA NA NA NA LTS-009 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.38 1 NA NA NA NA NA LTS-009 chr1 89318581 93309802 3991222 * c(GLMN, GBP4, GBP5, GBP6, HFM1, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.208928829124571 58 0.0430152268373295 0.751233004672353 2806 0.274266016069875 2 2 0 -6.84923653482199 LTS-009 chr1 93309803 93311015 1213 * FAM69A NA 0 NA 2.424 1 NA NA NA NA NA LTS-009 chr1 93311016 95615801 2304786 * c(MIR760, LOC100129046, CCDC18-AS1, TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, DR1, ALG14, F3, MTF2, ABCA4, GCLM, DNTTIP2, CCDC18, FAM69A, TMED5, FNBP1L, ABCD3, LOC729970, BCAR3, ARHGAP29) 0.218643434034595 35 0.0460986702081305 0.888276619791609 1818 0.329449620663354 2 2 0 -6.88668856137259 LTS-009 chr1 95615802 95616886 1085 * c(TMEM56-RWDD3, TMEM56) NA 0 NA 0.612 1 NA NA NA NA NA LTS-009 chr1 95616887 103352610 7735724 * c(LINC01349, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, OLFM3, LRRC39, COL11A1, TMEM56, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, SLC35A3, RWDD3, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PTBP2, MFSD14A, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.217504968004034 35 0.0449392680751039 0.766851098566036 2470 0.298841907106648 2 2 0 -6.80567937837969 LTS-009 chr1 103352611 103354057 1447 * COL11A1 NA 0 NA 1.447 1 NA NA NA NA NA LTS-009 chr1 103354058 104068501 714444 * COL11A1 0.190915020014191 3 0.139177344899712 1.0093429068551 287 0.413960564184658 3 3 0 -6.75063081235787 LTS-009 chr1 104068502 110199478 6130977 * c(LOC100129138, VAV3-AS1, VAV3, HENMT1, ATXN7L2, C1orf194, NBPF4, FNDC7, CELSR2, NTNG1, WDR47, CLCC1, AKNAD1, AMPD2, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM2, GSTM4, GPSM2, SLC25A24, MYBPHL, MIR197, PRPF38B, PRMT6, RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, GPR61, PSRC1) 0.211430468782874 26 0.102684168504879 0.822001747379823 3302 0.353915602734837 2 2 0 -6.76428041391386 LTS-009 chr1 110199479 110199489 11 * c(GSTM2, GSTM4) NA 0 NA 0.614 1 NA NA NA NA NA LTS-009 chr1 110199490 110281941 82452 * c(GSTM1, GSTM2, GSTM3, GSTM4, GSTM5) 0.264 1 NA 0.608751003900146 299 0.221299710056055 1 1 0 -5.76900322739167 LTS-009 chr1 110281942 110282040 99 * GSTM3 NA 0 NA 0.604 1 NA NA NA NA NA LTS-009 chr1 110282041 110950633 668593 * c(LAMTOR5-AS1, LAMTOR5, AHCYL1, CSF1, UBL4B, ALX3, GSTM3, KCNC4, SLC6A17, LOC440600, RBM15, EPS8L3, STRIP1, SLC16A4) 0.225236010067999 8 0.066896508557195 0.80000957098695 939 0.225178509872664 2 2 0 -6.74719973590425 LTS-009 chr1 110950634 110993782 43149 * LAMTOR5-AS1 NA 0 NA 0.524 1 NA NA NA NA NA LTS-009 chr1 110993783 112318809 1325027 * c(LINC01160, FAM212B-AS1, CEPT1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, KCNA2, KCNA3, KCNA10, KCND3, PGCP1, OVGP1, ATP5F1, LRIF1, FAM212B, RAP1A, CYMP, WDR77, DENND2D, PROK1, CD53) 0.228525814908904 32 0.0508534322595894 0.647301885045947 1504 0.268234105541436 2 2 0 -7.21313655986269 LTS-009 chr1 112318810 118170988 5852179 * c(MIR942, AP4B1-AS1, MIR320B1, MIR4256, TSPAN2, BCAS2, AP4B1, PHTF1, MAN1A2, MAB21L3, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, IGSF3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, ATP1A1, NGF, NHLH2, NRAS, TRIM33, RSBN1, FAM46C, ST7L, SLC22A15, CTTNBP2NL, OLFML3, PTGFRN, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, VTCN1, SIKE1, TRIM45, VANGL1, CAPZA1, CASQ2, TTF2, NA NA NA NA NA NA NA NA NA LTS-009 ATP1A1-AS1, CD2, CD101, CD58, LRIG2) 0.225047764467425 102 0.0678525879714861 0.799283179666503 5249 0.304023270905858 2 2 0 -6.74680103417236 LTS-009 NA NA NA NA LTS-009 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.456 1 NA NA NA NA NA LTS-009 chr1 118319311 118321096 1786 * character(0) NA 0 NA 0.41709105704742 40 0.131655141494935 0 NA NA -5.76682786807293 LTS-009 chr1 118321097 120460418 2139322 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.200965341279618 25 0.0777748245471074 0.73151389299661 1374 0.301674133057106 2 2 0 -6.85117840564149 LTS-009 chr1 120460419 120461060 642 * NOTCH2 NA 0 NA 1.093 1 NA NA NA NA NA LTS-009 chr1 120461061 120484421 23361 * NOTCH2 0.209275351069677 2 0.00636396103067893 0.959056579511439 102 0.22882777847861 7 6 1 -6.99745543054126 LTS-009 chr1 120484422 120529742 45321 * NOTCH2 NA 0 NA 0.927788597531578 81 0.207024136035474 3 NA NA -5.77042053997452 LTS-009 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.298 1 NA NA NA NA NA LTS-009 chr1 120534071 120535421 1351 * NOTCH2 0.5 1 NA 0.615955917790189 8 0.150972029102839 1 1 0 -5.76463317207418 LTS-009 chr1 120535422 121307551 772130 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.326956763378169 21 0.0912795027322543 0.697772165784814 269 0.998749773743745 1 1 0 -6.80163485208578 LTS-009 chr1 121307552 121313547 5996 * EMBP1 NA 0 NA 0.626752524296721 29 0.241773196043571 1 NA NA -5.76498429147866 LTS-009 chr1 143912360 144013853 101494 * FAM72D 0.381 1 NA 0.659453350150626 5 0.641898356439709 1 1 0 -5.76762204577154 LTS-009 chr1 144013854 145137211 1123358 * c(NBPF20, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.347763084526098 70 0.101477344002273 0.907542824911824 606 0.377197641728025 3 2 1 -6.88928945881352 LTS-009 chr1 145137212 145139110 1899 * NBPF20 NA 0 NA 0.415124555881761 48 0.271791742571012 0 NA NA -5.76498504944164 LTS-009 chr1 145139111 145290585 151475 * c(NBPF10, NBPF20, NOTCH2NL) 0.298302067521655 13 0.0695207956344073 0.775178802030685 222 1.29707968130156 1 1 0 -6.73888411622777 LTS-009 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 1.432 1 NA NA NA NA NA LTS-009 chr1 145414668 147806796 2392129 * c(NBPF10, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, GJA5, GJA8, RNF115, ANKRD34A, ACP6, GPR89B, PDZK1, PRKAB2, BCL9, NBPF13P, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.374683118047928 25 0.0559910111833438 0.980789457997165 2019 0.354211704773512 3 2 1 -6.78296873135914 LTS-009 chr1 147806797 148193315 386519 * c(NBPF14, LINC01138) NA 0 NA 0.482 1 NA NA NA NA NA LTS-009 chr1 148193316 148902261 708946 * c(NBPF14, NBPF15, PPIAL4D, NA, PPIAL4F, PPIAL4E) NA 0 NA 0.348480891344404 56 0.146231606679978 0 NA NA -5.77094025387902 LTS-009 chr1 148902262 152057231 3154970 * c(LOC100132111, FCGR1CP, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, NA NA NA NA NA NA NA NA NA LTS-009 OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, LOC645166, MRPL9, HIST2H3D, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.370169501367228 83 0.0780603570058458 1.02868989441587 5435 0.83576951268051 3 2 1 -6.7616562937048 LTS-009 NA NA NA NA LTS-009 chr1 152057232 153507281 1450050 * c(C1orf68, PGLYRP3, TCHHL1, RPTN, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, TCHH, LCE3D) 0.384684529356472 57 0.0524689131020004 0.782561749607803 1598 0.308986833745111 2 1 1 -7.31980426619266 LTS-009 chr1 153507282 153507607 326 * S100A6 NA 0 NA 0.947 1 NA NA NA NA NA LTS-009 chr1 153507608 155583272 2075665 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, IL6R, ILF2, KCNN3, C1orf189, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, MSTO1, UBE2Q1, ASH1L, LENEP, SLC50A1, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, NA NA NA NA NA NA NA NA NA LTS-009 RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, ASH1L-AS1, POU5F1P4, SHC1, INTS3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.389773071301622 92 0.0509607117999463 1.02042371415804 5749 0.339190795931006 3 2 1 -6.73457296070507 LTS-009 NA NA NA NA LTS-009 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.621 1 NA NA NA NA NA LTS-009 chr1 155583288 155638590 55303 * c(MSTO1, YY1AP1) 0.381343139205832 2 0.0565685424949238 0.659794804223621 107 0.208993751377813 3 2 1 -6.88199790069661 LTS-009 chr1 155638591 155640226 1636 * YY1AP1 NA 0 NA 1.124 1 NA NA NA NA NA LTS-009 chr1 155640227 155708463 68237 * c(YY1AP1, DAP3) 0.400274371045792 2 0.0304055915910215 0.991238738179451 133 0.607875868531144 8 5 3 -6.83841639395471 LTS-009 chr1 155708464 155716482 8019 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 0.248 1 NA NA NA NA NA LTS-009 chr1 155716483 155722401 5919 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.635155811215931 83 0.318617605706093 1 NA NA -5.76483269889119 LTS-009 chr1 155722402 155722940 539 * c(GON4L, YY1AP1) NA 0 NA 0.844 1 NA NA NA NA NA LTS-009 chr1 155722941 155917403 194463 * c(KIAA0907, SYT11, RXFP4, GON4L, YY1AP1, RIT1, SCARNA4, SNORA80E, ARHGEF2) 0.416202271557023 8 0.0608346705658635 0.930750527066086 554 0.843118098020075 5 3 2 -6.76775896143185 LTS-009 chr1 155917404 155990838 73435 * c(SSR2, ARHGEF2) 0.422 1 NA 1.27747066221465 198 0.351676554397628 4 4 0 -5.76458470412853 LTS-009 chr1 155990839 156005053 14215 * character(0) NA 0 NA 0.732 1 NA NA NA NA NA LTS-009 chr1 156005054 156006772 1719 * UBQLN4 0.374392033860232 2 0.107480230740355 0.567054985516851 39 0.19563761632947 3 2 1 -6.75093350664076 LTS-009 chr1 156006773 156006782 10 * UBQLN4 NA 0 NA 0.804 1 NA NA NA NA NA LTS-009 chr1 156006783 158153021 2146239 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, SMG5, LAMTOR2, HDGF, CYCSP52, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GPATCH4, KIRREL, PRCC, UBQLN4, RAB25, RHBG, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, CCT3, MIR765, FCRL2, MRPL24, PAQR6, ISG20L2, FCRL5, FCRL4, TMEM79, SH2D2A, CD1D, CD5L, MEX3A, SLC25A44, ARHGEF11) 0.390186787420119 84 0.0697453804991795 1.02359834513577 4110 0.345431272955763 3 2 1 -6.73411439318552 LTS-009 chr1 158153022 158153790 769 * CD1D NA 0 NA 0.539 1 NA NA NA NA NA LTS-009 chr1 158153791 159750889 1597099 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, APCS, IFI16, OR10R2, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, CADM3, SPTA1, OR6N2, OR6K2, CD1A, CD1B, CD1C, CD1D, CD1E, AIM2) 0.371859016864661 27 0.0833824983173389 0.733966820522969 1507 0.415318778634926 2 1 1 -7.13586805143404 LTS-009 chr1 159750890 160516247 765358 * c(LINC01133, SLAMF6, COPA, NCSTN, CFAP45, C1orf204, FCRL6, KCNJ9, KCNJ10, VSIG8, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, DUSP23, SLAMF8, VANGL2, IGSF9, PEX19, TAGLN2, CASQ1, PEA15, CD84, SLAMF9, PIGM, IGSF8) 0.39165940297902 45 0.0795688952475092 0.999166433333028 2204 0.353947426658488 3 2 1 -6.73686894099318 LTS-009 chr1 160516248 160920427 404180 * c(ITLN2, LY9, CD244, ITLN1, SLAMF7, SLAMF1, CD84, CD48) 0.360175671254189 18 0.111187837887593 0.795973312677674 557 0.378416791674642 3 2 1 -6.87287714225387 LTS-009 chr1 160920428 160920757 330 * ITLN2 NA 0 NA 1.381 1 NA NA NA NA NA LTS-009 chr1 160920758 161336071 415314 * c(TSTD1, MIR5187, KLHDC9, ITLN2, FCER1G, ARHGAP30, CFAP126, USP21, APOA2, MPZ, NDUFS2, NIT1, F11R, UFC1, PFDN2, PPOX, SDHC, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.370208288039088 9 0.0472602134757957 1.04669762909386 1372 0.325523964119787 3 2 1 -6.81116357708914 LTS-009 chr1 161336072 161336165 94 * CFAP126 NA 0 NA 0.815 1 NA NA NA NA NA LTS-009 chr1 161336166 161561403 225238 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, FCGR2C) 0.354142379485495 8 0.09031522178301 0.751142643341597 220 0.267761086918753 3 2 1 -6.98684362274685 LTS-009 chr1 161561404 183091440 21530037 * c(MIR921, GM140, MIR1295A, RASAL2-AS1, MIR3119-1, MIR3120, MIR3119-2, MIR3121, MIR3658, LOC100505795, LOC100505918, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, MIR4654, DNM3OS, MIR1295B, GPA33, STX6, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, AXDND1, ZNF648, TEDDM1, UHMK1, FCRLB, FAM163A, RC3H1, METTL11B, FAM78B, TDRD5, TOR1AIP2, DHX9, DPT, FLJ23867, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, NA NA NA NA NA NA NA NA NA LTS-009 FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TOR1AIP1, TIPRL, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, ABL2, CACYBP, KLHL20, GLUL, SLC9C2, LOC284648, C1orf111, LINC01142, NME7, MR1, HSPA7, ANKRD45, CCDC190, RGSL1, FASLG, SFT2D2, ILDR2, FMO6P, LINC00272, LAMC1, C1orf226, LOC400794, C1orf220, LMX1A, MGST3, LRRC52, LOC440700, ASTN1, SERPINC1, MYOC, ATP1B1, DDR2, PBX1, IER5, SUCO, HSD17B7, METTL13, PIGC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 PRRX1, TMCO1, POU2F1, RALGPS2, DARS2, C1orf112, ADCY10, DCAF6, SCYL3, MIR488, POGK, QSOX1, KIAA1614, BRINP2, CCDC181, RGS4, RGS16, RNASEL, GAS5, PAPPA2, SNORD74, RXRG, XCL1, TNN, MRPS14, SELE, SELL, SELP, RPL31P11, TOR3A, RFWD2, SOAT1, UAP1, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR556, MIR557, TNR, TOP1P1, TNFSF4, LOC730102, LOC730159, UCK2, CACNA1E, NPHS2, LINC00626, MROH9, NPL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SHCBP1L, NUF2, TEX35, ACBD6, ZBTB37, FCRLA, ANKRD36BP1, RGS5, MAEL, RGS8, BLZF1, VAMP4, CREG1, SEC16B, LHX4, TNFSF18, MPZL1, ANGPTL1, TBX19, FCGR2C, CENPL, CD247, XPR1, DUSP27, RCSD1, METTL18, GORAB, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, NOS1AP, CEP350, RABGAP1L, FAM20B) 0.380216514117703 388 0.0699721424229395 0.99191305300708 15359 0.442939677641832 3 2 1 -6.79988074455579 LTS-009 NA NA NA NA LTS-009 chr1 183091441 183093704 2264 * LAMC1 NA 0 NA 1.51 1 NA NA NA NA NA LTS-009 chr1 183093705 183208560 114856 * c(LAMC1, LAMC2) 0.363972579869832 15 0.0471978611299082 1.31026962905765 279 0.421396548951819 6 4 2 -6.76078252388155 LTS-009 chr1 183208561 196716667 13508107 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, NMNAT2, COLGALT2, RGL1, SMG7-AS1, CFH, BRINP3, KCNT2, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2, SMG7) 0.382856923222532 54 0.0607030093645443 0.9984880290685 4366 0.365473706831687 3 2 1 -6.77072738945032 LTS-009 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.228 1 NA NA NA NA NA LTS-009 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.287848750045754 113 0.188255300048119 0 NA NA -5.79340532860739 LTS-009 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 0.604 1 NA NA NA NA NA LTS-009 chr1 196857130 200338010 3480881 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.364089375119292 35 0.0876032404143388 0.922687254287052 1847 0.480997743362676 3 2 1 -6.86869801364805 LTS-009 chr1 200338011 200342086 4076 * LINC00862 NA 0 NA 1.036 1 NA NA NA NA NA LTS-009 chr1 200342087 207639937 7297851 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR2, CSRP1, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, ZNF281, PHLDA3, TMEM9, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, IL10, RPS10P7, KISS1, TMEM81, NA NA NA NA NA NA NA NA NA LTS-009 LAD1, NA, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, AVPR1B, LINC00862, YOD1, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, NUAK2, DDX59, RASSF5, FCAMR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, SOX13, IKBKE, ZC3H11A, TMCC2, KIF14) 0.382316470782845 243 0.0668209443326211 1.06655508179585 11250 0.356483188196983 3 2 1 -6.79646433816787 LTS-009 NA NA NA NA LTS-009 chr1 207639938 207912286 272349 * c(CR1, CR1L, CR2) 0.362421285319638 9 0.050994553086035 0.865631685434497 320 0.279253793775781 3 2 1 -6.92950012610582 LTS-009 chr1 207912287 207925383 13097 * CD46 NA 0 NA 1.141 1 NA NA NA NA NA LTS-009 chr1 207925384 209779027 1853644 * c(LOC148696, MIR205, MIR29C, CD46, PLXNA2, CAMK1G, MIR205HG, CD34) 0.388407967797135 15 0.0508665855332312 1.19503390143727 580 0.336788094337026 3 2 1 -6.96223858052405 LTS-009 chr1 209779028 209779564 537 * CAMK1G NA 0 NA 0.757 1 NA NA NA NA NA LTS-009 chr1 209779565 218458810 8679246 * c(MIR4260, MIR3122, LINC00538, LINC00210, CENPF, SPATA17, TATDN3, C1orf74, SPATA45, FAM71A, ESRRG, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, KCNK2, LAMB3, ATF3, NEK2, G0S2, RRP15, KCTD3, DTL, GPATCH2, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, USH2A, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, NA NA NA NA NA NA NA NA NA LTS-009 LPGAT1) 0.37792362857827 78 0.0715658705401802 1.00722125649391 4716 0.494442046083727 3 2 1 -6.74810407368286 LTS-009 NA NA NA NA LTS-009 chr1 218458811 218475568 16758 * RRP15 NA 0 NA 1.233 1 NA NA NA NA NA LTS-009 chr1 218475569 219706552 1230984 * c(LYPLAL1, RRP15, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.417988962308229 2 0.0728319984622145 1.31229376586373 365 0.753783544759264 5 3 2 -6.75137369413917 LTS-009 chr1 219706553 219781662 75110 * character(0) NA 0 NA 0.823 1 NA NA NA NA NA LTS-009 chr1 219781663 220141824 360162 * c(RNU5F-1, SLC30A10) 0.466 1 NA 0.778041703501686 95 0.335264423395362 2 2 0 -5.76539584464652 LTS-009 chr1 220141825 220141851 27 * RNU5F-1 0.302 1 NA 1.525 1 NA NA NA NA NA LTS-009 chr1 220141852 234953934 14812083 * c(NA, LINC00582, MIR1182, LINC00184, TSNAX-DISC1, MIR320B2, MIR3620, LINC01354, LINC01132, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, NA NA NA NA NA NA NA NA NA LTS-009 PYCR2, H3F3A, HLX, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, COA6, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, TRIM17, EGLN1, MAP10, MARC2, SUSD4, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, TARBP1, LEFTY2, TLR5, TP53BP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 TSNAX, WNT9A, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.387719325974555 223 0.0636664552582321 1.03779030199818 11868 0.364975949175904 3 2 1 -6.7473791219763 LTS-009 NA NA NA NA LTS-009 chr1 234953935 235272604 318670 * character(0) NA 0 NA 0.69 1 NA NA NA NA NA LTS-009 chr1 235272605 241846867 6574263 * c(LOC100130331, LGALS8-AS1, MIR1537, MIR3123, MIR4753, CHML, LYST, CHRM3, WDR64, EDARADD, B3GALNT2, FH, RBM34, OPN3, GNG4, LINC01139, LGALS8, MTR, NID1, ARID4B, HEATR1, ERO1B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, SNORA14B, TBCE, GPR137B, KMO, ACTN2, GGPS1, TOMM20) 0.387689743392733 59 0.0523773678376587 0.954493740042255 3965 0.355250340617432 3 2 1 -6.87832242529935 LTS-009 chr1 241846868 243364109 1517242 * c(WDR64, PLD5, MAP1LC3C, LINC01347, EXO1, CEP170) 0.378450364073528 6 0.0505990777254553 0.77042986448339 482 0.414822407007308 3 2 1 -7.14799442425231 LTS-009 chr1 243364110 247752674 4388565 * c(AKT3, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, NLRP3, COX20, OR2B11, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, C1orf229, OR2W5, DESI2, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670, CEP170) 0.362951520748007 37 0.104820173481867 1.02159653787382 2770 0.54902487324046 3 2 1 -6.76506461143165 LTS-009 chr1 247752675 247768812 16138 * character(0) NA 0 NA 0.545 1 NA NA NA NA NA LTS-009 chr1 247768813 248570481 801669 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3) 0.385159170957294 65 0.0523505886749651 0.750502725851624 691 0.786922298519606 3 2 1 -6.80744075545784 LTS-009 chr1 248570482 248604490 34009 * character(0) NA 0 NA 0.49 1 NA NA NA NA NA LTS-009 chr1 248604491 248637060 32570 * c(OR2T3, OR2T2) 0.338202618558274 7 0.0964683515830081 0.515846309664319 73 0.369413950287028 1 1 0 -6.82388302852167 LTS-009 chr1 248637061 248652216 15156 * c(OR2T3, OR2T5) 0.444678262201684 4 0.078029908795709 0.248565313570903 45 0.313308345231849 0 0 0 -6.74556885924063 LTS-009 chr1 248652217 248684882 32666 * OR2T5 NA 0 NA 0.519 1 NA NA NA NA NA LTS-009 chr1 248684883 248845561 160679 * c(OR2T34, OR2T10, OR2T11, OR2T29, OR2G6, OR14I1, OR2T27, OR2T35) 0.394770015149653 19 0.0690188125892359 0.691248442909914 199 0.512313340332165 3 2 1 -6.79600568556467 LTS-009 chr1 248845562 249212878 367317 * c(MIR3124, PGBD2, OR14I1, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.342661445396919 5 0.0278352294763309 0.863278615147018 293 0.324762681059318 4 3 1 -7.43074376093465 LTS-009 chr1 249212879 249214134 1256 * PGBD2 NA 0 NA 0.870840324851186 23 0.275393889667878 2 NA NA -5.76449061469298 LTS-009 chr2 38824 272051 233228 * c(SH3YL1, ACP1, FAM110C) 0.335 1 NA 0.819148681274258 189 0.262292240357145 2 2 0 -5.76610150811227 LTS-009 chr2 272052 1635760 1363709 * c(TMEM18, FAM150B, LINC01115, ACP1, SNTG2, TPO, PXDN) 0.3495470745986 8 0.144326762195077 0.853227121972334 434 0.279061367099846 2 1 1 -7.00596065214629 LTS-009 chr2 1635761 1794203 158443 * c(MYT1L, PXDN) 0.373322042494617 5 0.0775512733615638 1.2189366652828 251 0.346112225587591 3 2 1 -6.77663064016408 LTS-009 chr2 1794204 4136113 2341910 * c(LINC01304, RNASEH1-AS1, MYT1L, RNASEH1, TRAPPC12, ADI1, ALLC, RPS7, TSSC1, MYT1L-AS1, COLEC11) 0.375116383619726 22 0.0770254919291426 0.894813778325258 760 0.331306421079383 3 2 1 -6.9679497048829 LTS-009 chr2 4672653 20884381 16211729 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, E2F6, CYS1, LPIN1, PUM2, NTSR2, ATP6V1C2, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, RHOB, LOC400940, LINC00487, LINC00954, MATN3, NA NA NA NA NA NA NA NA NA LTS-009 MYCN, ODC1, NBAS, CPSF3, KIDINS220, WDR35, RDH14, RRM2, SDC1, HS1BP3, SOX11, ADAM17, LINC01249, RAD51AP2, VSNL1, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, RNF144A) 0.380144983425424 136 0.0730972074905696 1.04875463963053 6186 0.370320458796053 3 2 1 -6.7832851424767 LTS-009 NA NA NA NA LTS-009 chr2 20884382 20884397 16 * character(0) NA 0 NA 0.585 1 NA NA NA NA NA LTS-009 chr2 20884398 21255512 371115 * c(APOB, LDAH) 0.377844329331535 6 0.0443110219546635 0.746117211258136 423 0.290203949958394 3 2 1 -7.0118089945954 LTS-009 chr2 21255513 21256127 615 * APOB NA 0 NA 0.975 1 NA NA NA NA NA LTS-009 chr2 21256128 51255832 29999705 * c(SLC8A1-AS1, OST4, LINC01126, LINC01119, ARHGEF33, LOC100271832, LOC100288911, MIR1301, BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, CEBPZOS, MIR4765, MIR548AD, PREB, LRPPRC, RMDN2-AS1, CEBPZ, CENPA, CDC42EP3, CGREF1, SIX2, RAB10, ADCY3, GTF2A1L, STON1, EMILIN1, GPN1, KLHL29, PPP1R21, CIB4, PLEKHH2, ZNF513, GALM, TMEM178A, TCF23, GAREM2, PLB1, MYADML, RMDN2, CYP1B1, ADGRF3, OXER1, FAM179A, UBXN2A, KCNG3, NA NA NA NA NA NA NA NA NA LTS-009 DNMT3A, DTNB, KRTCAP3, EPAS1, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, WDR43, RHOQ, HAAO, FOSL2, PRKD3, ALK, SPDYA, FSHR, FTH1P3, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, IFT172, GCKR, SNORD53, EML4, LINC00486, C2orf61, DNAJC5G, CYP1B1-AS1, STON1-GTF2A1L, MSH6, GTF3C2, NRBP1, HADHA, HADHB, EHD3, FOXN2, APOB, C2orf70, PRR30, CDKL4, PFN4, FAM228B, LOC375196, KCNK3, KHK, KIF3C, MFSD2B, C2orf71, LOC388942, TMEM247, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 LINC01118, PTRHD1, SULT6B1, LHCGR, C2orf91, LINC01121, LTBP1, EPCAM, MPV17, CAPN14, MSH2, ITSN2, MEMO1, CRIM1, DNAJC27, ATRAID, DYNC2LI1, SF3B6, YPEL5, VIT, PIGF, POMC, ATAD2B, HEATR5B, TMEM214, PPM1B, PPM1G, SLC35F6, PPP1CB, TRMT61B, SRBD1, ASXL2, NDUFAF7, TTC27, SLC30A6, PRKCE, EIF2AK2, KCNK12, DPYSL5, TRIM54, TTC7A, BIRC6, MTA3, NLRC4, AGBL5, THADA, RBKS, ATL2, ABCG5, ABCG8, SRSF7, LOC645949, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 FNDC4, SIX3, SLC3A1, FAM228A, SLC8A1, SOS1, SPAST, SRD5A2, ZFP36L2, STRN, SNORD92, MIR558, MIR559, LOC728730, C1GALT1C1L, DNAJC27-AS1, MORN2, UCN, XDH, SLC30A3, CAD, CENPO, GALNT14, CCDC121, CLIP4, CAMKMT, GEMIN6, FBXO11, WDCP, CALM2, THUMPD2, LBH, C2orf16, YIPF4, ZNF512, DPY30, ABHD1, MAP4K3, SELENOI, NCOA1, SLC5A6, EIF2B4, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, CAPN13, DRC1, HNRNPLL, NRXN1, OTOF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CRIPT, TP53I3, MRPL33, BRE, PREPL, FEZ2, SOCS5, SNX17, SUPT7L) 0.371071258397671 329 0.0717775304791226 1.0150553096009 20346 0.45071194005054 3 2 1 -6.76825657328791 LTS-009 NA NA NA NA LTS-009 chr2 51255833 51255848 16 * NRXN1 NA 0 NA 0.667 1 NA NA NA NA NA LTS-009 chr2 51255849 54532163 3276315 * c(MIR3682, GPR75, PSME4, ERLEC1, TSPYL6, CHAC2, ASB3, NRXN1, ACYP2) 0.345044729167337 5 0.197208772624343 0.760199392352824 591 0.355434956899886 2 1 1 -6.89897462062964 LTS-009 chr2 54532164 54587378 55215 * c(C2orf73, ACYP2) 0.46 1 NA 0.76893858281758 33 0.188250246488631 2 2 0 -5.76551706956623 LTS-009 chr2 54587379 73480010 18892632 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, MPHOSPH10, SMYD5, C1D, CCT7, CCT4, B3GNT2, PROKR1, SNRNP27, CFAP36, TEX261, CCDC85A, WDR92, ADD2, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, CLEC4F, GKN2, APLF, TMEM17, SPRED2, EMX1, EFEMP1, AAK1, CEP68, EXOC6B, EHBP1, VAX2, CNRIP1, RAB11FIP5, GFPT1, NFU1, BMP10, ZNF638, NA NA NA NA NA NA NA NA NA LTS-009 LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, FIGLA, NOTO, PRORSD1P, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, MIR216A, MIR217, MXD1, MDH1, MEIS1, MTIF2, OTX1, CD207, PCBP1, WDPCP, PCYOX1, VPS54, PEX13, ATP6V1B1, BCL11A, PLEK, ETAA1, AFTPH, C2orf42, FANCL, PPP3R1, FBXO48, NAGK, CCDC88A, GKN1, CYP26B1, PNO1, RPL23AP32, RTN4, PELI1, PPP4R3B, RAB1A, REL, RPS27A, GMCL1, LOC644838, PAPOLG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SLC1A4, SNRPG, SPR, SPTBN1, TGFA, TIA1, MEIS1-AS3, UGP2, VRK2, XPO1, OR7E91P, ANKRD53, DYSF, FAM161A, ANTXR1, PRADC1, KIAA1841, MCEE, FAM136A, PNPT1, SFXN5, USP34, SERTAD2, ARHGAP25) 0.443949695511246 183 0.0634396169573852 0.812553421443976 10481 0.320675660586505 2 1 1 -6.7836781813429 LTS-009 NA NA NA NA LTS-009 chr2 73480011 73480016 6 * CCT7 NA 0 NA 0.642 1 NA NA NA NA NA LTS-009 chr2 73480017 74146928 666912 * c(CCT7, STAMBP, FBXO41, EGR4, ALMS1P1, C2orf78, TPRKB, ACTG2, ALMS1, DUSP11, NAT8) 0.445190697425038 30 0.0549169173942962 0.688261757171253 1042 0.216593262243068 2 1 1 -6.91521899163765 LTS-009 chr2 74146929 87003290 12856362 * c(SNAR-H, DCTN1-AS1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, NA NA NA NA NA NA NA NA NA LTS-009 MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, MRPL19) 0.448656338169273 115 0.0699459178679647 0.785296398811302 6069 0.280974946126449 2 1 1 -6.76164783752551 LTS-009 NA NA NA NA LTS-009 chr2 87003291 87400212 396922 * c(ANAPC1P1, LOC285074, RMND5A, CD8A, CD8B) NA 0 NA 0.603245869831348 247 0.284696071970117 1 NA NA -5.77440515567113 LTS-009 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.038 1 NA NA NA NA NA LTS-009 chr2 87404257 87424429 20173 * RMND5A NA 0 NA 0.175100391070558 58 0.180507472617899 0 NA NA -5.92673352737508 LTS-009 chr2 87424430 87426642 2213 * RMND5A 0.405 1 NA 0.441334228865453 43 0.337389630860496 1 1 0 -5.76516314091961 LTS-009 chr2 87426643 91925073 4498431 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.413835535703315 25 0.0540284492960267 0.717017376563526 911 0.415327047042877 2 1 1 -7.02691216791109 LTS-009 chr2 91925074 91925139 66 * character(0) 0.379 1 NA 1.838 1 NA NA NA NA NA LTS-009 chr2 91925140 91925151 12 * character(0) 0.493 1 NA 1.525 1 NA NA NA NA NA LTS-009 chr2 91925152 91933207 8056 * character(0) 0.203 1 NA 1.16228151520781 13 0.749946442532176 4 4 0 -5.76445512899209 LTS-009 chr2 91933208 91937699 4492 * character(0) 0.228721494113902 11 0.0613078669132644 1.19025686746179 39 0.900283419911386 6 5 1 -6.73735508633368 LTS-009 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.25538007148099 17 0.3996435820166 4 NA NA -5.76441160480519 LTS-009 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.375 1 NA 1.531 1 NA NA NA NA NA LTS-009 chr2 95537246 99936268 4399023 * c(MIR3127, ACTR1B, TXNDC9, ARID5A, MGAT4A, CNGA3, LYG1, MITD1, TRIM43, COX5B, TEKT4, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, STARD7-AS1, KCNIP3, KIAA1211L, INPP4A, ANKRD36, MAL, ASTL, LOC442028, COA5, FAHD2A, ANKRD39, FAM178B, MRPL30, LIPT1, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, NA NA NA NA NA NA NA NA NA LTS-009 ZAP70, ZNF2, TSGA10, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.38533621432107 97 0.0737640603406438 0.984111312015085 4856 0.412110647941904 3 2 1 -6.75630872368397 LTS-009 NA NA NA NA LTS-009 chr2 99936269 99937949 1681 * c(TXNDC9, MRPL30) NA 0 NA 1.368 1 NA NA NA NA NA LTS-009 chr2 99937950 112523918 12585969 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, TXNDC9, EDAR, TBC1D8, GPR45, NMS, TMEM182, LINC01102, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, CREG2, LINC00116, FHL2, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, SH3RF3, IL1R1, SLC9A4, AFF3, LIMS1, SULT1C3, NPAS2, NPHP1, MRPL30, REV1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, RANBP2, SLC5A7, NA NA NA NA NA NA NA NA NA LTS-009 RPL31, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, RGPD4-AS1, RFX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.382869305498371 128 0.0711510934588759 1.04425837443704 5728 0.412698571185481 3 2 1 -6.75455055342948 LTS-009 NA NA NA NA LTS-009 chr2 112523919 112543007 19089 * ANAPC1 0.4 1 NA 0.64764137483727 96 0.309868745381065 1 1 0 -5.76640621084315 LTS-009 chr2 112543008 112543013 6 * ANAPC1 NA 0 NA 1.045 1 NA NA NA NA NA LTS-009 chr2 112543014 114392751 1849738 * c(MERTK, RABL2A, RPL23AP7, FBLN7, TTL, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, FLJ42351, IL36G, ANAPC1, FAM138B, PAX8-AS1, SLC20A1, RGPD8, PAX8, POLR1B, CHCHD5, ZC3H8, IL1F10, DDX11L2, TMEM87B) 0.372304021889351 50 0.0959883942814687 0.999480580514612 2155 0.383728285107848 3 2 1 -6.7514748250379 LTS-009 chr2 114392752 114395289 2538 * RABL2A NA 0 NA 0.695 1 NA NA NA NA NA LTS-009 chr2 114395290 114416393 21104 * RABL2A NA 0 NA 0.570404468817068 47 0.124084100572157 1 NA NA -5.7644148448037 LTS-009 chr2 114416394 114424887 8494 * character(0) NA 0 NA 1.277 1 NA NA NA NA NA LTS-009 chr2 114424888 130737359 16312472 * c(RAB6C-AS1, RNU4ATAC, LOC100499194, MIR4783, MIR4782, ACTR3, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, DPP10-AS1, LOC389033, LINC01191, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, SLC35F5, TMEM177, AMMECR1L, RAB6C, NIFK, NA NA NA NA NA NA NA NA NA LTS-009 SFT2D3, LINC01101, MARCO, DDX18, HS6ST1) 0.383637804009891 75 0.0722395289959005 1.02151045324765 5572 0.430906136959003 3 2 1 -6.73458466226702 LTS-009 NA NA NA NA LTS-009 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.301 1 NA NA NA NA NA LTS-009 chr2 130737484 130909867 172384 * c(RAB6C-AS1, MED15P9, FAR2P1, SMPD4, POTEF, RAB6C, CCDC74B) 0.37389305262461 2 0.0410121933088197 0.742543429796083 164 0.420454242472908 3 2 1 -6.85520490406339 LTS-009 chr2 130909868 131296734 386867 * c(FAR2P2, TUBA3E, PTPN18, SMPD4, POTEI, CFC1B, MZT2B, CCDC115, IMP4) 0.431748601432042 12 0.0528029498716835 1.05682258001617 450 0.304275007351878 4 2 2 -6.81409572108185 LTS-009 chr2 131296735 131297148 414 * character(0) NA 0 NA 0.825 1 NA NA NA NA NA LTS-009 chr2 131297149 132291265 994117 * c(CYP4F30P, MIR4784, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, GPR148, LINC01120, NOC2LP2, LOC440910, POTEE, ARHGEF4, PLEKHB2, CFC1, POTEJ, MZT2A, CCDC74A) 0.368488658237767 34 0.0839118298404091 0.824026519550505 937 0.310695137089344 3 2 1 -7.03803944739474 LTS-009 chr2 132291266 132491372 200107 * C2orf27A NA 0 NA 1.284 1 NA NA NA NA NA LTS-009 chr2 132491373 135715431 3224059 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, TMEM163, CCNT2) 0.359431742675143 30 0.0989356286718271 1.03492002377181 878 0.310292119182906 3 2 1 -6.78287875967811 LTS-009 chr2 135715432 138434533 2719102 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) 0.401151388666941 30 0.0460918747670371 0.885866167799946 1410 0.310130138579764 3 2 1 -7.1181766493065 LTS-009 chr2 138434534 158114168 19679635 * c(LOC100144595, ZEB2-AS1, MIR4773-1, MIR4773-2, STAM2, NXPH2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, EPC2, ARL5A, MMADHC, GPD2, HNMT, SPOPL, RBM43, KCNJ3, KIF5C, RND3, TEX41, NEB, NR4A2, ORC4, LRP1B, RIF1, PRPF40A, MBD5, ARHGAP15, RPRM, YY1P2, TNFAIP6, PABPC1P2, CACNB4, GTDC1, THSD7B, KYNU, NMI, ACVR2A, ZEB2) 0.373143745253811 67 0.0893681068701472 1.04608933051567 5154 0.408350088017359 3 2 1 -6.78395222412013 LTS-009 chr2 158114169 158958483 844315 * c(GALNT5, ACVR1C, UPP2, ERMN, ACVR1, CYTIP) 0.389575775332908 3 0.0263881286440197 0.894734534169667 486 0.338969305589668 3 2 1 -6.81550139453948 LTS-009 chr2 158958484 158958526 43 * UPP2 NA 0 NA 1.309 1 NA NA NA NA NA LTS-009 chr2 158958527 162017472 3058946 * c(TANK, LY75-CD302, MIR4785, CCDC148, WDSUB1, UPP2, PLA2R1, BAZ2B, ITGB6, LY75, CCDC148-AS1, RBMS1, MARCH7, PKP4, TANC1, DAPL1, CD302) 0.38595557688058 23 0.0431074124931862 1.10091204230645 1738 0.39699636625091 3 2 1 -6.79616980681551 LTS-009 chr2 162017473 162017714 242 * TANK NA 0 NA 0.775 1 NA NA NA NA NA LTS-009 chr2 162017715 164450352 2432638 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.388869739703345 8 0.0573072857497195 0.939081316945715 1111 0.377356852504875 3 2 1 -6.80715618720886 LTS-009 chr2 164450353 164459089 8737 * character(0) NA 0 NA 1.861 1 NA NA NA NA NA LTS-009 chr2 164459090 165944778 1485689 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN3A) 0.355855149228757 15 0.109800251539308 1.19909385274579 699 0.577015825250589 4 3 1 -6.80663687074169 LTS-009 chr2 165944779 179394847 13450069 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, LOC100506124, TTC21B-AS1, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, NOSTRIN, XIRP2, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, CERS6, METAP1D, GAD1, GALNT3, GORASP2, STK39, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, NA NA NA NA NA NA NA NA NA LTS-009 HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, LRP2, MIR10B, LINC01124, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, PLEKHA3, SP3, SSB, TTN, WIPF1, SCRN3, FASTKD1, TTC21B, METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 ) 0.382458774142857 123 0.0800297833737078 1.00927459016287 9700 0.380017169756553 3 2 1 -6.74488052940028 LTS-009 NA NA NA NA LTS-009 chr2 179394848 179641411 246564 * c(MIR548N, TTN-AS1, TTN) 0.255225027388357 3 0.224072160995813 0.785419595922297 2799 0.208738862464979 2 2 0 -6.75287536668259 LTS-009 chr2 179641412 182541689 2900278 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, CCDC141, ITGA4, CERKL, NEUROD1, CWC22, TTN, SESTD1) 0.387410516989957 19 0.0568436863544455 0.924640542876144 1227 0.32245845569499 3 2 1 -6.89836871315209 LTS-009 chr2 182541690 189342565 6800876 * c(CALCRL, NCKAP1, NUP35, DUSP19, ZSWIM2, PPP1R1C, FAM171B, FRZB, ITGAV, CERKL, FSIP2, NEUROD1, PDE1A, GULP1, DNAJC10, ZC3H15, SSFA2, MIR561, TFPI, ZNF804A) 0.396218788783669 24 0.103076296140708 1.03022634904766 2313 0.416091909839462 3 2 1 -6.73885906162895 LTS-009 chr2 189342566 189348066 5501 * GULP1 NA 0 NA 1.814 1 NA NA NA NA NA LTS-009 chr2 189348067 190425704 1077638 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, DIRC1, COL3A1, COL5A2, SLC40A1, GULP1, WDR75) 0.471 1 NA 1.27507460658624 927 0.456731571043196 4 4 0 -5.76568203203716 LTS-009 chr2 190425705 191399328 973624 * c(NEMP2, OSGEPL1-AS1, ANKAR, HIBCH, MSTN, SLC40A1, INPP1, PMS1, ASNSD1, MFSD6, OSGEPL1, C2orf88, ORMDL1) 0.346716891244729 21 0.0927374173213195 0.991851739123575 1109 0.346299207704081 3 2 1 -6.8499824177454 LTS-009 chr2 191399329 192700519 1301191 * c(NEMP2, GLS, MYO1B, NAB1, NABP1, STAT1, STAT4, SDPR) 0.390610348384626 9 0.0470985963461522 1.139988051715 907 0.514883329998645 3 2 1 -6.77063941923438 LTS-009 chr2 192700520 199013183 6312664 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, TMEFF2, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, PCGEM1, BOLL, PGAP1, COQ10B, SDPR, ANKRD44, STK17B, MARS2, GTF3C3) 0.382984918815508 28 0.0467747614304799 0.912057382586854 2649 0.326347174847894 3 2 1 -7.17122025907214 LTS-009 chr2 199013184 199046593 33410 * PLCL1 NA 0 NA 1.337 1 NA NA NA NA NA LTS-009 chr2 199046594 201400852 2354259 * c(TYW5, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, SPATS2L, FTCDNL1, C2orf47) 0.404889624793986 7 0.0496214239445596 1.13027627368322 609 0.37685615468304 3 2 1 -6.90596436519549 LTS-009 chr2 201400853 202358745 957893 * c(LOC100507140, CLK1, ALS2CR12, SGO2, ALS2CR11, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, PPIL3, STRADB, NIF3L1, CFLAR-AS1, TRAK2, CASP8, CASP10, CFLAR, BZW1) 0.405094691965668 30 0.0551595804039954 0.93112850245193 1576 0.328092033745662 3 2 1 -6.84189399316029 LTS-009 chr2 202358746 202358809 64 * ALS2CR11 NA 0 NA 0.909 1 NA NA NA NA NA LTS-009 chr2 202358810 207027155 4668346 * c(SNORD11B, GCSHP3, KIAA2012, ABI2, PARD3B, ICA1L, CTLA4, FAM117B, ALS2CR11, EEF1B2, SNORD51, ICOS, NDUFS1, NOP58, INO80D, WDR12, CYP20A1, ALS2, MPP4, SNORA41, RAPH1, CDK15, TMEM237, NBEAL1, BMPR2, SNORD11, SNORD70, SUMO1, CARF, FZD7, NRP2, CD28) 0.365109030398121 45 0.070956132414843 1.05738683125478 3745 0.485121541984849 3 2 1 -6.80402604614615 LTS-009 chr2 207027156 207041053 13898 * c(EEF1B2, GPR1) 0.383 1 NA 0.900756863193261 25 0.541992090963205 2 2 0 -5.76484521307206 LTS-009 chr2 207041054 207041441 388 * GPR1 0.438 1 NA 0.833000728166106 9 0.38807777714153 2 2 0 -5.76441334189207 LTS-009 chr2 207041442 216249755 9208314 * c(LOC100130451, MIR548F2, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, LANCL1, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, METTL21A, CCNYL1, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, GPR1, UNC80, CPS1-IT1, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, PTH2R, ZDBF2, BARD1, RPE, FZD5, SPAG16, KLF7, ADAM23 NA NA NA NA NA NA NA NA NA LTS-009 ) 0.450103484602116 117 0.038004397344342 0.799317794034629 5039 0.355548204867828 2 1 1 -6.7838820173003 LTS-009 NA NA NA NA LTS-009 chr2 216249756 216251371 1616 * FN1 NA 0 NA 1.131 1 NA NA NA NA NA LTS-009 chr2 216251372 219270173 3018802 * c(ARPC2, AAMP, PKI55, GPBAR1, FN1, PNKD, RUFY4, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, CATIP, MIR26B, SMARCAL1, MREG, PECR, MARCH4, CTDSP1, RPL37A, TMBIM1, LINC00607, SLC11A1, TNP1, TNS1, DIRC3, XRCC5, TMEM169) 0.455979878608197 29 0.0297758043076503 0.867256889049817 2184 0.492386223364721 2 1 1 -6.9749112054971 LTS-009 chr2 219270174 220074811 804638 * c(LOC100129175, MIR3131, ABCB6, ZFAND2B, CRYBA2, SLC23A3, LINC00608, CYP27A1, CFAP65, CNPPD1, STK36, IHH, MIR375, PRKAG3, FEV, USP37, CTDSP1, BCS1L, RNF25, VIL1, WNT6, ZNF142, FAM134A, NHEJ1, WNT10A, PLCD4, CDK5R2, CNOT9, TTLL4) 0.369 1 NA 0.761838763436501 2199 0.251227091741559 2 2 0 -5.77897588691526 LTS-009 chr2 220074812 220074918 107 * ABCB6 NA 0 NA 1.282 1 NA NA NA NA NA LTS-009 chr2 220074919 224462032 4387114 * c(MIR4268, MIR3132, FARSB, ABCB6, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, PAX3, ANKZF1, ASIC4, PTPRN, SLC4A3, TUBA4A, SCG2, ATG9A, GLB1L, CHPF, TUBA4B, STK16) 0.452446406845948 52 0.0410262534126617 0.890066669940223 2871 0.348063129469989 2 1 1 -7.05632078195832 LTS-009 chr2 224462033 224462095 63 * SCG2 NA 0 NA 0.7 1 NA NA NA NA NA LTS-009 chr2 224462096 225907230 1445135 * c(MIR4439, AP1S3, SERPINE2, DOCK10, WDFY1, MRPL44, SCG2, FAM124B, CUL3) 0.447994432905675 16 0.0447152099402429 0.781344869186893 900 0.249668677437495 2 1 1 -6.76147542504335 LTS-009 chr2 225907231 226273520 366290 * c(DOCK10, NYAP2) NA 0 NA 0.502 1 NA NA NA NA NA LTS-009 chr2 226273521 231407932 5134412 * c(MIR5702, MIR5703, SP140, COL4A3, COL4A4, FBXO36, SLC16A14, DAW1, AGFG1, SP110, IRS1, PID1, C2orf83, MFF, NYAP2, CCL20, LOC646736, LOC654841, SP100, TM4SF20, SPHKAP, SLC19A3, RHBDD1, DNER, TRIP12, SP140L) 0.429342791494492 65 0.104182640570077 0.707846774123835 2954 0.308808033426908 2 1 1 -7.15208329078168 LTS-009 chr2 231407933 231408012 80 * SP100 NA 0 NA 0.851 1 NA NA NA NA NA LTS-009 chr2 231408013 234474325 3066313 * c(MIR1471, MIR4777, NMUR1, CHRND, CHRNG, DIS3L2, SPATA3, LOC151475, LINC00471, LOC151484, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, HTR2B, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, ATG16L1, USP40, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SCARNA6, SCARNA5, ARMC9, EFHD1, ITM2C, DGKD, GPR55, B3GNT7, ECEL1, EIF4E2) 0.444911482502623 71 0.0559635336859253 0.792687795171173 3476 0.260828731471846 2 1 1 -6.7399621063011 LTS-009 chr2 234474326 234526272 51947 * USP40 NA 0 NA 0.582 1 NA NA NA NA NA LTS-009 chr2 234526273 234698077 171805 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0.456908407463422 15 0.0426644716697294 0.595503783893416 285 0.266857946809977 2 1 1 -6.95532265865217 LTS-009 chr2 234698078 234698097 20 * character(0) 0.465 1 NA 1.964 1 NA NA NA NA NA LTS-009 chr2 234698098 234978746 280649 * c(MSL3P1, HJURP, SPP2, TRPM8) 0.422739011597736 9 0.15553170452069 0.800251087417738 510 0.326719252757036 2 1 1 -6.7396959438638 LTS-009 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 1.705 1 NA NA NA NA NA LTS-009 chr2 235401661 235404069 2409 * ARL4C NA 0 NA 1.55147237998989 54 0.985672460207761 5 NA NA -5.76441380052062 LTS-009 chr2 235404070 238667459 3263390 * c(ARL4C, COPS8, AGAP1, COL6A3, SH3BP4, GBX2, ASB18, PRLH, ACKR3, RAB17, MLPH, IQCA1, LRRFIP1) 0.426509570788848 27 0.0598862406848336 0.913732860454067 1469 0.33794807111564 2 1 1 -7.0697677762383 LTS-009 chr2 238667460 242836535 4169076 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, STK25, CAPN10, TWIST2, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, SCLY, ASB1, KIF1A, PPP1R7, HES6, NA NA NA NA NA NA NA NA NA LTS-009 RNPEPL1, GAL3ST2, LOC643387, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.445249512825116 186 0.0714882390548394 0.828462175701425 5559 0.443122954201637 2 1 1 -6.75795238306748 LTS-009 NA NA NA NA LTS-009 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.915573640605346 27 0.235876585384738 3 NA NA -5.79078255782434 LTS-009 chr3 239351 418089 178739 * CHL1 0.254 1 NA 0.695708258460046 69 0.140749496326319 2 2 0 -5.86076908352992 LTS-009 chr3 418090 7782338 7364249 * c(EGOT, BHLHE40-AS1, MIR4790, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, GRM7, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.227838303922523 33 0.0560074061661004 0.787547347914121 1813 0.294224582249502 2 2 0 -6.76991109841572 LTS-009 chr3 7782339 9123030 1340692 * c(LMCD1-AS1, GRM7, LINC00312, LMCD1, OXTR, SSUH2, RAD18, CAV3, SRGAP3) 0.223079935264835 22 0.0365690948930747 0.94817155672604 750 0.316320174733576 2 2 0 -6.99893727530844 LTS-009 chr3 9123031 18438803 9315773 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, GALNT15, CHCHD4, METTL6, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, DAZL, FANCD2, FBLN2, CAND2, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, THUMPD3, HACL1, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, HRH1, LOC339862, COL6A4P1, TPRXL, IRAK2, LHFPL4, NA NA NA NA NA NA NA NA NA LTS-009 LOC401052, THUMPD3-AS1, ATP2B2, OGG1, CCDC174, GHRL, PPARG, SETD5, TMEM40, EMC3, BRK1, RAF1, RPL32, SATB1, CIDEC, SEC13, RBSN, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, OXNAD1, SH3BP5, VGLL4, TBC1D5, TATDN2, SRGAP3, IQSEC1) 0.233147087633172 186 0.071068425468121 0.796724144194335 8311 0.300790670566968 2 2 0 -6.7718789934662 LTS-009 NA NA NA NA LTS-009 chr3 18438804 18456514 17711 * SATB1 NA 0 NA 0.485 1 NA NA NA NA NA LTS-009 chr3 18456515 20194233 1737719 * c(MIR4791, KCNH8, PP2D1, EFHB, RAB5A, SATB1, KAT2B) 0.186576656679164 7 0.0443583889097278 0.626499617884116 542 0.212538543154789 2 2 0 -8.06507988827445 LTS-009 chr3 20194234 25833527 5639294 * c(MIR548AC, MIR4792, MIR4442, SGO1-AS1, SGO1, LINC00691, NKIRAS1, VENTXP7, OXSM, NGLY1, RARB, RPL15, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, KAT2B, NR1D2) 0.220065461798435 15 0.0329108463811524 0.875875666942877 1104 0.361477787644813 2 2 0 -6.97579462805536 LTS-009 chr3 25833528 25835550 2023 * OXSM NA 0 NA 0.586 1 NA NA NA NA NA LTS-009 chr3 25835551 27394419 1558869 * c(LRRC3B, NEK10, LINC00692, OXSM) 0.250370266855124 13 0.051938202924985 0.645017213446509 301 0.215031828183139 1 1 0 -7.55077556763975 LTS-009 chr3 27394420 27394434 15 * NEK10 NA 0 NA 0.772 1 NA NA NA NA NA LTS-009 chr3 27394435 38317862 10923428 * c(PDCD6IP, OSBPL10-AS1, CTDSPL, CRTAP, ARPP21, CMTM7, OSBPL10, CCR4, TRIM71, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, AZI2, TMPPE, LINC00693, STAC, TGFBR2, UBP1, EOMES, DCLK3, LRRFIP2, SLC22A13, SLC4A7, EPM2AIP1, TRANK1, DLEC1, OXSR1) 0.228494987617929 88 0.0649261687834302 0.800197062518171 5462 0.291720248277037 2 2 0 -6.76103008993158 LTS-009 chr3 38317863 40577210 2259348 * c(ACVR2B-AS1, EIF1B, SCN11A, CCR8, CX3CR1, XIRP1, TTC21A, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, RPL14, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EXOG, XYLB) 0.225105791090152 53 0.0484924170751273 0.710811156821042 2468 0.303423696406258 2 2 0 -6.94128152939619 LTS-009 chr3 40577211 42794268 2217058 * c(CCDC13-AS1, LYZL4, KLHL40, CTNNB1, CCDC13, TRAK1, ZNF621, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.21076929285015 39 0.0617196001431908 0.837840462553562 1434 0.30369062295106 2 2 0 -6.77374587914351 LTS-009 chr3 42794269 42798517 4249 * CCDC13 NA 0 NA 0.657 1 NA NA NA NA NA LTS-009 chr3 42798518 44778594 1980077 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, ACKR2, CCDC13, CYP8B1, HIGD1A, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, SNRK, ANO10, ZKSCAN7, FAM198A, ZNF35, POMGNT2, ZNF502) 0.225749633450025 33 0.0552437779301887 0.742139434829407 1828 0.245340513667105 2 2 0 -6.85046069055878 LTS-009 chr3 44778595 44790198 11604 * character(0) NA 0 NA 0.292 1 NA NA NA NA NA LTS-009 chr3 44790199 44794590 4392 * KIAA1143 0.183 1 NA 0.510915993607666 95 0.237552384745597 1 1 0 -5.7649520972708 LTS-009 chr3 44794591 51432626 6638036 * c(NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, MIR4271, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, LARS2-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CXCR6, CSPG5, CCR9, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, TREX1, TUSC2, CISH, CCR1, CCR3, CCR5, COL7A1, TMEM42, LSMEM2, CCDC12, DAG1, DOCK3, CELSR3, KLHDC8B, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, NBEAL2, KLHL18, LARS2, NAT6, NA NA NA NA NA NA NA NA NA LTS-009 TMEM158, NDUFAF3, ALS2CL, TMIE, PTPN23, AMT, GNAI2, GNAT1, XCR1, FBXW12, KIF9-AS1, GPX1, SETD2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, IMPDH2, C3orf62, PRSS45, AMIGO3, RHOA, CDHR4, FAM212A, LAMB2, LTF, MIR191, MAP4, TMEM89, MST1, MST1R, MYL3, MIR425, C3orf18, SHISA5, ZDHHC3, ZMYND10, TMA7, ZNF589, HEMK1, IP6K2, NCKIPSD, PFKFB4, PLXNB1, LZTFL1, P4HTM, SLC6A20, ELP6, QRICH1, DALRD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 PRKAR2A, KIF15, PTH1R, KIAA1143, QARS, RNF123, SEMA3F, KIF9, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CDCP1, CCDC71, SLC26A6, SMARCC1, MIR564, TCTA, TDGF1, TGM4, CLEC3B, CCR2, UBA7, USP4, UQCRC1, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, LRRC2, FYCO1, CCDC51, CAMP, RTP3, LRRC2-AS1, HYAL3, ATRIP, NICN1, MON1A, HYAL2, BSN, LIMD1, UCN2, CCRL2, CACNA2D2, IP6K1, CDC25A) 0.209029480839545 131 0.0545183511907597 0.80058884968066 13303 0.251140243160144 2 2 0 -6.74248293393953 LTS-009 NA NA NA NA LTS-009 chr3 51432627 51909621 476995 * c(IQCF4, IQCF1, RAD54L2, GRM2, RBM15B, IQCF2, IQCF5, IQCF3, IQCF6, TEX264, DCAF1) 0.208737866158262 4 0.0475604878023765 0.699410838929578 581 0.235793914302214 2 2 0 -6.82818613176404 LTS-009 chr3 51909622 51910960 1339 * IQCF1 NA 0 NA 1.018 1 NA NA NA NA NA LTS-009 chr3 51910961 54925465 3014505 * c(SNORD19B, LINC00696, PARP3, ABHD14A-ACY1, TMEM110-MUSTN1, CACNA2D3-AS1, NISCH, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DUSP7, ALAS1, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, SELENOK, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TKT, TNNC1, CACNA1D, ESRG, NA NA NA NA NA NA NA NA NA LTS-009 WDR82, BAP1, ABHD14B, RRP9, RFT1, ACTR8, ACY1) 0.203821205745391 92 0.0559503141126769 0.830446554442732 4820 0.270585589717931 2 2 0 -6.80134932240894 LTS-009 NA NA NA NA LTS-009 chr3 54925466 55521475 596010 * c(CACNA2D3-AS1, CACNA2D3, LRTM1, WNT5A) 0.205324668152889 10 0.0362068133551316 1.05935491146165 279 0.488504888665372 2 2 0 -6.89588798553031 LTS-009 chr3 55521476 55717738 196263 * c(ERC2, ERC2-IT1, WNT5A) NA 0 NA 0.666 1 NA NA NA NA NA LTS-009 chr3 55717739 63820869 8103131 * c(MIR3938, PTPRG-AS1, SYNPR-AS1, ARHGEF3-AS1, RPP14, FAM107A, FAM3D, C3orf49, SNTN, SYNPR, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FHIT, FLNB, FAM208A, ERC2, APPL1, CCDC66, LINC00698, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, FEZF2, ABHD6, C3orf14, PTPRG, SLMAP, THOC7, ACOX2, CADPS, HESX1) 0.191503579452883 47 0.0739140686656878 0.798708551444672 4138 0.339669060653729 2 2 0 -6.79370312178212 LTS-009 chr3 63820870 67048833 3227964 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, PRICKLE2, LRIG1, ADAMTS9, ATXN7, MIR548A2, THOC7, KBTBD8, MAGI1, PSMD6) 0.247594872967531 15 0.0561559902245098 0.951205272176266 1176 0.332804879047364 2 2 0 -7.43842263456288 LTS-009 chr3 67048834 67049346 513 * KBTBD8 NA 0 NA 0.545 1 NA NA NA NA NA LTS-009 chr3 67049347 69036683 1987337 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.248667675370584 11 0.0350749846108953 0.659483665740184 403 0.307504157727165 2 2 0 -7.65522665543481 LTS-009 chr3 69036684 69036707 24 * EOGT 0.293 1 NA 0.975 1 NA NA NA NA NA LTS-009 chr3 69036708 69137498 100791 * c(MIR3136, ARL6IP5, EOGT, TMF1, UBA3) 0.24467990139352 5 0.0273532447800987 0.918175379043526 338 0.345641844785131 6 5 1 -7.01604214793543 LTS-009 chr3 69137499 69138840 1342 * ARL6IP5 NA 0 NA 0.654 1 NA NA NA NA NA LTS-009 chr3 69138841 69987063 848223 * c(ARL6IP5, FRMD4B, MITF, LMOD3) 0.243118196116613 6 0.0525724896373252 0.725758059462096 352 0.198951914501631 2 2 0 -7.00706433840969 LTS-009 chr3 69987064 72495800 2508737 * c(MIR1284, LINC00870, RYBP, FOXP1, GPR27, EIF4E3, MITF, PROK2) 0.183395162777445 6 0.114029236017202 0.960538350202774 662 0.415588616836623 3 3 0 -6.77896164718468 LTS-009 chr3 72495801 73024958 529158 * c(SHQ1, GXYLT2) 0.247479996669122 6 0.0270733571369837 0.752822941622124 148 0.253516905244432 2 2 0 -7.5063115729969 LTS-009 chr3 73024959 73431830 406872 * c(PPP4R2, PDZRN3, EBLN2) 0.205 1 NA 0.948570975156751 187 0.489947652277551 3 3 0 -5.77015981071842 LTS-009 chr3 73431831 75986833 2555003 * c(ZNF717, MIR1324, PDZRN3, CNTN3, ROBO2, FAM86DP) 0.347322899243464 193 0.0874192873484916 0.795691766016827 672 0.421820773205836 2 1 1 -7.33045791774078 LTS-009 chr3 75986834 77089395 1102562 * ROBO2 0.186 1 NA 0.807466881665643 9 0.598392220871896 2 2 0 -5.76479730448766 LTS-009 chr3 77089396 89530358 12440963 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.168084575024998 18 0.0803316654289467 0.804343248134808 1582 0.391286881012714 2 2 0 -6.9366500188498 LTS-009 chr3 89530359 90283666 753308 * EPHA3 NA 0 NA 0.759357497835406 43 0.344629156941129 2 NA NA -5.77278794521622 LTS-009 chr3 93591838 93847379 255542 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) NA 0 NA 0.911585071175049 361 0.417583776434913 3 NA NA -5.7760158630009 LTS-009 chr3 93847380 94224960 377581 * character(0) NA 0 NA 0.249 1 NA NA NA NA NA LTS-009 chr3 94224961 94225058 98 * character(0) 0.499 1 NA 0.418566884338241 7 0.227445022137742 0 0 0 -5.76445576000426 LTS-009 chr3 94225059 96070731 1845673 * c(MTHFD2P1, LINC00879) 0.318830717217416 4 0.146472693700908 0.455006511049123 34 0.284988876162811 1 1 0 -7.35672856482621 LTS-009 chr3 96070732 97806123 1735392 * c(CRYBG3, GABRR3, EPHA6, OR5AC2, ARL6, MINA) 0.388953264501896 3 0.0516430053347014 0.891486082522366 593 0.270870997105323 3 2 1 -6.98993606841709 LTS-009 chr3 97806124 98225632 419509 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.412712807360417 11 0.0481712852981185 0.629621155690725 217 0.288574854745283 2 1 1 -7.06916535540215 LTS-009 chr3 98225633 111898569 13672937 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, LOC152225, ALCAM, MYH15, PLCXD2, GCSAM, ABI3BP, NECTIN3, ZBTB11, MORC1, GPR15, LINC00636, SLC9C1, PDCL3P4, TAGLN3, DUBR, TMPRSS7, LNP1, FLJ22763, LINC01205, TRAT1, IMPG2, TRMT10C, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CLDND1, NIT2, BBX, PCNP, NA NA NA NA NA NA NA NA NA LTS-009 SENP7, KIAA1524, RPL24, NFKBIZ, TMEM30CP, LINC00488, MIR548A3, MIR567, ZBED2, CEP97, C3orf52, CMSS1, RETNLB, CCDC54, ADGRG7, CBLB, PHLDB2, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.384115643067598 85 0.0555516440266319 1.01356712107882 5642 0.541813661333568 3 2 1 -6.73715752817004 LTS-009 NA NA NA NA LTS-009 chr3 111898570 111899392 823 * SLC9C1 NA 0 NA 0.801 1 NA NA NA NA NA LTS-009 chr3 111899393 111904687 5295 * SLC9C1 NA 0 NA 0.550601810786272 39 0.256633262806962 1 NA NA -5.76446246674117 LTS-009 chr3 111904688 111918160 13473 * SLC9C1 NA 0 NA 1.126 1 NA NA NA NA NA LTS-009 chr3 111918161 122078666 10160506 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, POLQ, FSTL1, LRRC58, CCDC58, CD200R1, ADPRH, CSTA, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, GPR156, DRD3, TIGIT, USF3, ZDHHC23, NEPRO, GAP43, ZBTB20, GOLGB1, TUSC7, RABL3, SLC9C1, ILDR1, GTPBP8, GSK3B, GTF2E1, HCLS1, HGD, CD200R1L, LSAMP, MIR198, CD200, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, TMEM39A, CFAP44, NA NA NA NA NA NA NA NA NA LTS-009 EAF2, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, SLC15A2, MIR568, UPK1B, ZNF80, QTRT2, NAA50, CASR, B4GALT4, NR1I2, MAATS1, BOC, CD80, CD86, STXBP5L, IQCB1) 0.380931467814348 178 0.076535760220449 0.910953036160435 6777 0.369898327107612 3 2 1 -7.2810289816786 LTS-009 NA NA NA NA LTS-009 chr3 122078667 122078728 62 * CCDC58 NA 0 NA 1.046 1 NA NA NA NA NA LTS-009 chr3 122078729 123247343 1168615 * c(LOC100129550, PDIA5, ADCY5, CCDC58, DTX3L, PARP15, HACD2, FAM162A, SEC22A, KPNA1, SEMA5B, WDR5B, PARP14, HSPBAP1, PARP9, DIRC2) 0.386052120272528 50 0.0534850579935315 1.00719824684188 1744 0.374391527604299 3 2 1 -6.73448622771179 LTS-009 chr3 123247344 123262509 15166 * HACD2 NA 0 NA 1.739 1 NA NA NA NA NA LTS-009 chr3 123262510 123687731 425222 * c(MYLK-AS1, HACD2, MYLK, CCDC14) 0.359047149516714 2 0.0127279220613579 1.21052029849916 524 0.493715051123131 6 4 2 -7.02984186189413 LTS-009 chr3 123687732 123699134 11403 * ROPN1 0.379 1 NA 0.622622247250993 75 0.266946410926063 1 1 0 -5.76518744145566 LTS-009 chr3 123699135 125691188 1992054 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.387300329524684 46 0.0588343166153411 1.07808627742275 1582 0.379174557804546 3 2 1 -6.75608179112105 LTS-009 chr3 125691189 125725475 34287 * c(ROPN1B, SLC41A3) NA 0 NA 0.532935077879789 69 0.374380650234821 1 NA NA -5.76504077075656 LTS-009 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 0.866 1 NA NA NA NA NA LTS-009 chr3 125725550 136056214 10330665 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, EPHB1, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, ANAPC13, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NA NA NA NA NA NA NA NA NA LTS-009 CFAP100, NPHP3-AS1, MCM2, PODXL2, PCCB, AMOTL2, ACKR4, RAB6B, PLXNA1, SLC41A3, ACPP, MSL2, PPP2R3A, CDV3, IFT122, HMCES, ISY1, KIAA1257, SRPRB, RHO, EEFSEC, RPN1, RYK, ALG1L2, TXNRD3NB, COL6A4P2, LOC653712, SLCO2A1, TMEM108, SNORA7B, SNORA58, TF, TRH, FAM86HP, CNBP, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, ABTB1, ACAD11, BFSP2, CHCHD6, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.386374716910104 131 0.064121146533462 1.0340863480639 8099 0.339317295853852 3 2 1 -6.73975059092277 LTS-009 NA NA NA NA LTS-009 chr3 136056215 136196071 139857 * c(STAG1, PCCB) 0.409073330911114 2 0.0106066017177982 1.28432032013764 124 0.310292240194109 5 3 2 -7.00851942592538 LTS-009 chr3 136196072 136310422 114351 * STAG1 0 1 NA 1.2279516838574 49 0.646642811117597 4 4 0 -5.76445980033942 LTS-009 chr3 136310423 143711133 7400711 * c(LOC100289361, LOC100507389, SLC9A9-AS1, STAG1, GRK7, PISRT1, DZIP1L, C3orf58, MRAS, U2SURP, ZBTB38, GK5, ARMC8, PCOLCE2, SLC9A9, TRIM42, PAQR9, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, ATP1B3, A4GNT, DBR1, CLDN18, PIK3CB, PLS1, IL20RB, XRN1, ATR, FAIM, SLC25A36, MRPS22, RASA2, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, TFDP2, TRPC1, PRR23A, CEP70, SLC35G2, ESYT3, SOX14, SPSB4, PXYLP1, COPB2, CHST2, NA NA NA NA NA NA NA NA NA LTS-009 RNF7) 0.315131331061805 70 0.0717883953435661 1.2169539466531 5019 0.517190607540075 4 3 1 -6.74580537569152 LTS-009 NA NA NA NA LTS-009 chr3 143711134 148614910 4903777 * c(CPA3, CPB1, AGTR1, C3orf58, PLSCR5, PLOD2, PLSCR1, PLSCR2, PLSCR4, ZIC1, ZIC4) 0.294545337911398 8 0.054154375894949 1.43754912444424 744 0.570686294001304 5 4 1 -6.86458395439537 LTS-009 chr3 148614911 148703750 88840 * character(0) NA 0 NA 0.797687404805185 39 0.197331991779734 2 NA NA -5.76441732310822 LTS-009 chr3 148703751 148705383 1633 * character(0) NA 0 NA 2.066 1 NA NA NA NA NA LTS-009 chr3 148705384 150342724 1637341 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, CP, WWTR1, SERP1, GYG1, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, LOC646903, HLTF, TM4SF4, EIF2A, HPS3, TSC22D2) 0.277177799699403 23 0.0284714682784161 1.51218871218433 1480 0.576389858583891 5 4 1 -6.77747960069975 LTS-009 chr3 150342725 150344882 2158 * SELENOT NA 0 NA 1.197 1 NA NA NA NA NA LTS-009 chr3 150344883 156763955 6419073 * c(TIPARP-AS1, MIR548H2, ARHGEF26-AS1, LOC100507537, MIR5186, KCNAB1-AS2, KCNAB1-AS1, MED12L, CLRN1-AS1, AADAC, ERICH6, C3orf79, DHX36, AADACP1, PLCH1, TIPARP, ARHGEF26, IGSF10, C3orf33, GPR171, AADACL2, GPR149, LEKR1, MBNL1-AS1, MBNL1, MME, P2RY1, SELENOT, P2RY13, GPR87, SUCNR1, RAP2B, TMEM14EP, PA2G4P4, SIAH2, P2RY12, SSR3, LINC00886, CLRN1, KCNAB1, GMPS, SLC33A1, P2RY14) 0.26326371110341 47 0.0741197246353391 1.33589055916738 2998 0.522265957489722 5 4 1 -6.8752061815458 LTS-009 chr3 156763956 156864223 100268 * c(LINC00881, LINC00880) NA 0 NA 1.54 1 NA NA NA NA NA LTS-009 chr3 156864224 175523452 18659229 * c(LOC100128164, MIR3919, IQCJ-SCHIP1, SMC4, MIR4789, NAALADL2-AS3, LOC101243545, PDCD10, OTOL1, PPM1L, WDR49, LRRC34, PQLC2L, SPTSSB, ECT2, RPL22L1, MECOM, SLITRK3, NLGN1, TNIK, NAALADL2, GHSR, GPR160, GOLIM4, TRIM59, SCHIP1, LRRIQ4, SAMD7, IL12A, KPNA4, TMEM212, C3orf80, MIR15B, MIR16-2, MLF1, CLDN11, NMD3, RSRC1, SERPINI1, SERPINI2, PLD1, PRKCI, MYNN, EIF5A2, LXN, CCNL1, NCEH1, IFT80, SLC7A14, PTX3, NA NA NA NA NA NA NA NA NA LTS-009 BCHE, RARRES1, LINC01330, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SKIL, SLC2A2, IQCJ, SCARNA7, MIR551B, MIR569, TERC, SEC62, VEPH1, ZBBX, LRRC31, PHC3, ARL14, SPATA16, ACTRT3, GFM1, B3GALNT1, TNFSF10, EGFEM1P) 0.265024811836873 120 0.063160179965967 1.48136387803933 6617 0.733984098940083 5 4 1 -6.7363510480952 LTS-009 NA NA NA NA LTS-009 chr3 176737106 176768468 31363 * TBL1XR1 NA 0 NA 2.25298160968072 173 0.921727917051257 8 NA NA -5.76445230771747 LTS-009 chr3 176768469 176769332 864 * TBL1XR1 NA 0 NA 0.913 1 NA NA NA NA NA LTS-009 chr3 176769333 187433495 10664163 * c(LOC100131635, MIR1224, LINC00578, LINC00888, ABCC5, ABCC5-AS1, ADIPOQ-AS1, LINC01014, ALG3, KCNMB2, IGF2BP2, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, RTP1, CRYGS, TTC14, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, MCF2L2, ATP11B, VPS8, LOC253573, FETUB, LAMP3, KCNMB3, HTR3E, C3orf70, HRG, CCDC39, EHHADH-AS1, NMRAL1P1, RTP2, SOX2-OT, KNG1, FLJ46066, NDUFB5, ZNF639, PEX5L, NA NA NA NA NA NA NA NA NA LTS-009 DNAJB11, PIK3CA, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, MASP1, MCCC1, PSMD2, MRPL47, SENP2, GNB4, RFC4, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, ST6GAL1, SOX2, SST, SNORA81, SNORD66, THPO, TBL1XR1, MAP6D1, FXR1, B3GNT5, ACTL6A, CHRD, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.273211518859462 131 0.0533100185142257 1.39683640556706 8504 0.536255434666942 5 4 1 -6.80324759477971 LTS-009 NA NA NA NA LTS-009 chr3 187433496 195345273 7911778 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, XXYLT1-AS2, CLDN16, LRRC15, FAM43A, TMEM207, CPN2, MB21D2, XXYLT1, CCDC50, PYDC2, FGF12, ACAP2, UTS2B, GP5, TPRG1, HES1, LPP-AS2, OSTN, ATP13A5, APOD, IL1RAP, FLJ42393, LINC00884, LPP, OPA1, PPP1R2, P3H2, LSG1, HRASLS, BCL6, GMNC, LOC647323, ATP13A3, ATP13A4, MGC2889, TP63, CLDN1, TMEM44) 0.256158915400122 145 0.0566951061157069 1.56802955088683 3783 0.763594838089782 5 4 1 -6.79574670398124 LTS-009 chr3 195345274 195426484 81211 * c(MIR570, SDHAP2) 0.21098051075041 7 0.0743582063873441 1.22598092926273 81 0.916882768466673 2 2 0 -6.7456021858388 LTS-009 chr3 195426485 195447708 21224 * character(0) NA 0 NA 1.682 1 NA NA NA NA NA LTS-009 chr3 195447709 195481101 33393 * c(MUC20, MUC4) 0.325822757704283 19 0.11142904804645 2.12060563823104 139 1.65911560066611 7 5 2 -6.73333316939478 LTS-009 chr3 195481102 196728805 1247704 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, SLC51A, FBXO45, SENP5, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, TFRC, PIGZ, CEP19) 0.280535784035475 44 0.0760515396343894 1.31146381482524 2043 0.460420011945916 5 4 1 -6.7946315875254 LTS-009 chr3 196728806 197023377 294572 * c(MFI2-AS1, MIR4797, DLG1, MELTF) 0.25875273886892 2 0.00282842712474619 1.78302520114224 323 0.52894626811121 13 10 3 -6.96143325700477 LTS-009 chr3 197023378 197023947 570 * DLG1 NA 0 NA 0.843 1 NA NA NA NA NA LTS-009 chr3 197023948 197615970 592023 * c(MIR922, DLG1-AS1, DLG1, LOC220729, BDH1, IQCG, FYTTD1, LRCH3, RUBCN) 0.323962310891582 7 0.0835241624578524 1.38583304178862 579 0.413009487263228 4 3 1 -6.75795212298368 LTS-009 chr3 197615971 197770512 154542 * c(RPL35A, IQCG, LMLN) NA 0 NA 1.26383642188625 275 0.414800942274738 4 NA NA -5.76448024829109 LTS-009 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.396 1 NA 0.788494646487336 15 0.17722603270024 2 2 0 -5.76442196496046 LTS-009 chr4 60336 86014 25679 * c(ZNF595, ZNF718) 0.469 1 NA 0.806218887534067 24 0.373011355074471 2 2 0 -5.76442864732919 LTS-009 chr4 86015 86291 277 * c(ZNF595, ZNF718) NA 0 NA 1.042 1 NA NA NA NA NA LTS-009 chr4 86292 1377737 1291446 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, ZNF595, DGKQ, ZNF721, ZNF718, GAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, ZNF141, ABCA11P, MFSD7, TMEM175, CTBP1-AS2) 0.450480737790644 70 0.0728720325385123 1.29947801311167 2067 0.470898693570516 4 2 2 -6.75304100858609 LTS-009 chr4 1377738 1379633 1896 * UVSSA NA 0 NA 0.844 1 NA NA NA NA NA LTS-009 chr4 1379634 1670648 291015 * c(FAM53A, CRIPAK, UVSSA) 0.40876825960757 9 0.156126551233286 1.05584951211806 240 0.496878924140009 3 2 1 -6.74514407078887 LTS-009 chr4 1670649 1694547 23899 * c(FAM53A, SLBP) NA 0 NA 2.495 1 NA NA NA NA NA LTS-009 chr4 1694548 1992267 297720 * c(MIR943, TACC3, FGFR3, LETM1, SCARNA22, WHSC1, NELFA, SLBP, TMEM129) 0.354738831632551 20 0.0411268576608113 1.7580904064059 997 0.538187201051894 6 4 2 -6.7788377320163 LTS-009 chr4 1992268 1993216 949 * NELFA NA 0 NA 1.334 1 NA NA NA NA NA LTS-009 chr4 1993217 3521939 1528723 * c(MIR4800, HTT-AS, MFSD10, MXD4, ADD1, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, MSANTD1, POLN, C4orf48, CFAP99, LRPAP1, ZFYVE28, RGS12, RNF4, SH3BP2, NELFA, TNIP2, HAUS3, NOP14, FAM193A) 0.460535468326058 73 0.0389968825589311 1.31348600510598 2779 0.454359703095365 4 2 2 -6.92037543122644 LTS-009 chr4 3521940 3589560 67621 * c(LINC00955, LRPAP1) 0.25 1 NA 1.50216056763178 21 0.406579635495926 5 5 0 -5.76448401354435 LTS-009 chr4 3589561 3590911 1351 * LINC00955 0.242025261024019 8 0.0311895128895229 1.34915352785335 18 0.693320581047884 14 11 3 -6.73458036975673 LTS-009 chr4 3590912 3590938 27 * LINC00955 NA 0 NA 0.94 1 NA NA NA NA NA LTS-009 chr4 3590939 4190595 599657 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.256483350384112 13 0.0632389647817441 1.10217134298651 71 0.560987233057869 5 4 1 -6.85464688213417 LTS-009 chr4 4190596 4199634 9039 * OTOP1 0.466 1 NA 1.10747043235687 15 0.453772672265792 3 3 0 -5.76457720720893 LTS-009 chr4 4199635 5858003 1658369 * c(STX18-AS1, LINC01587, EVC2, OTOP1, CRMP1, ZBTB49, EVC, NSG1, MSX1, STX18, CYTL1, STK32B, LYAR, TMEM128) 0.42250891031021 17 0.115092833374271 1.1701185908015 967 0.486264297040303 4 2 2 -6.76352371438798 LTS-009 chr4 5858004 6577002 718999 * c(MIR378D1, CRMP1, JAKMIP1, MAN2B2, LOC285484, PPP2R2C, WFS1) 0.451655041057303 18 0.0380154767244636 0.938224691995083 516 0.344639815711917 2 1 1 -6.89472355354954 LTS-009 chr4 6577003 7744547 1167545 * c(LOC100129931, MIR4274, MIR4798, MRFAP1L1, MAN2B2, CCDC96, BLOC1S4, TBC1D14, SORCS2, S100P, FLJ36777, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.456099740490582 54 0.0327863294106921 1.17581164380313 1171 0.31501658868198 4 2 2 -6.91642314360592 LTS-009 chr4 7744548 7760443 15896 * c(SORCS2, AFAP1, AFAP1-AS1) NA 0 NA 2.403 1 NA NA NA NA NA LTS-009 chr4 7760444 8589074 828631 * c(TRMT44, GPR78, SH3TC1, AFAP1, ACOX3, ABLIM2, AFAP1-AS1, CPZ, HTRA3) 0.462149497264983 35 0.0360390311288453 1.39174178938446 919 0.413942598231004 4 2 2 -7.00280499520986 LTS-009 chr4 8589075 9998586 1409512 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, CPZ) 0.444078741733395 6 0.0323898132134163 1.03777007332032 243 0.35477376132639 4 2 2 -6.97039730010471 LTS-009 chr4 9998587 10020605 22019 * SLC2A9 NA 0 NA 1.515 1 NA NA NA NA NA LTS-009 chr4 10020606 10105722 85117 * c(MIR3138, SLC2A9, WDR1) 0.450511656491278 7 0.0721889056243277 1.47770132097795 131 0.359110805354848 6 3 3 -6.75600326539926 LTS-009 chr4 10105723 11401405 1295683 * c(CLNK, MIR572, ZNF518B, WDR1, HS3ST1) 0.446367238053182 4 0.0272931615366682 0.969248077646389 494 0.273825066063909 2 1 1 -7.15339579291761 LTS-009 chr4 11401406 36068765 24667360 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, ARAP2, CPEB2, PACRGL, LINC01085, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, BOD1L1, FBXL5, FAM184B, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, CPEB2-AS1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, NCAPG, CLRN2, SOD3, BST1, NA NA NA NA NA NA NA NA NA LTS-009 MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, SLIT2, RAB28, CD38, HS3ST1, FGFBP1) 0.450223649323095 105 0.0741298398095069 1.27600072969543 5383 0.721004839902645 4 2 2 -6.75906202248302 LTS-009 NA NA NA NA LTS-009 chr4 36068766 37446421 1377656 * c(MIR4801, ARAP2, DTHD1, NWD2) 0.34979304870482 2 0.067175144212722 0.890640791999889 398 0.340925878375388 3 2 1 -7.04677370407035 LTS-009 chr4 37446422 38774615 1328194 * c(PTTG2, TBC1D1, KLF3, PGM2, C4orf19, NWD2, RELL1, KLF3-AS1, TLR10) 0.461089126419686 22 0.0382930147462299 1.17701449391824 700 0.42070894754795 4 2 2 -6.94094863584796 LTS-009 chr4 38774616 38775040 425 * TLR10 0.451295618143584 3 0.0269072480941474 0.900423164134452 11 0.143906535324463 2 1 1 -6.85433851518899 LTS-009 chr4 38775041 38776180 1140 * TLR10 0.355 1 NA 0.861036774989336 25 0.228423969845548 2 2 0 -5.76449128078025 LTS-009 chr4 38776181 39528752 752572 * c(TLR6, LIAS, KLB, LOC401127, KLHL5, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, TMEM156, TLR10, FAM114A1) 0.367108183435769 33 0.036526557378699 0.958865817474117 1107 0.370892187199128 3 2 1 -6.92344727810604 LTS-009 chr4 39528753 39553258 24506 * c(UGDH-AS1, SMIM14, UGDH) NA 0 NA 1.06687598614528 12 0.211915702937548 3 NA NA -5.76499606126014 LTS-009 chr4 39553259 39699701 146443 * c(UGDH-AS1, SMIM14, UBE2K) 0.495 1 NA 0.983444845081754 31 0.477171142175144 3 3 0 -5.76500071089842 LTS-009 chr4 39699702 42626732 2927031 * c(MIR4802, UCHL1-AS1, ATP8A1, SLC30A9, SHISA3, LIMCH1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, BEND4, RHOH, RBM47, TMEM33, CHRNA9, N4BP2, UCHL1, NSUN7, PHOX2B) 0.445169982308122 52 0.0417947653812412 1.23177320243021 2421 0.422756103485604 4 2 2 -6.74773483649826 LTS-009 chr4 42626733 42627123 391 * ATP8A1 NA 0 NA 0.496 1 NA NA NA NA NA LTS-009 chr4 42627124 42628793 1670 * ATP8A1 0.444819351271768 7 0.0275983091269496 1.05528993519314 39 0.299132939542886 4 2 2 -6.75915757607601 LTS-009 chr4 42628794 44624177 1995384 * c(ATP8A1, KCTD8, GRXCR1) 0.338 1 NA 0.888613073871939 121 0.335124353590046 2 2 0 -5.8912353792523 LTS-009 chr4 44624178 49063872 4439695 * c(CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.354559701482463 59 0.102126885015156 0.931407558974854 2763 0.420308455372886 3 2 1 -6.92279567315742 LTS-009 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.62452216440883 5 0.0454609722729288 1 NA NA -5.76499807575009 LTS-009 chr4 52709193 52714511 5319 * DCUN1D4 0.348 1 NA 1.36755495279426 17 0.273874300278323 5 5 0 -5.7646592752151 LTS-009 chr4 52714512 68906179 16191668 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, NA NA NA NA NA NA NA NA NA LTS-009 SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.385146839169805 82 0.0666201644500522 0.977613690461767 4637 0.355141958371368 3 2 1 -6.88613375564161 LTS-009 NA NA NA NA LTS-009 chr4 68906180 68907458 1279 * UBA6-AS1 NA 0 NA 0.23295438588888 51 0.209726439935081 0 NA NA -5.76698785529803 LTS-009 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.54 1 NA NA NA NA NA LTS-009 chr4 68907461 73154543 4247083 * c(FTLP10, CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, DCK, RUFY3, AMBN, FDCSP, GC, SMR3A, SULT1B1, CSN1S2AP, GRSF1, HTN1, HTN3, JCHAIN, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, MUC7, UGT2B28, ODAM, UBA6-AS1, LOC550113, UTP3, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.369473170940713 56 0.0782608359370026 0.875008867732678 2525 0.397646989142952 3 2 1 -7.13213707291102 LTS-009 chr4 73154544 73156633 2090 * ADAMTS3 NA 0 NA 1.929 1 NA NA NA NA NA LTS-009 chr4 73156634 77026833 3870200 * c(PPBPP2, THAP6, C4orf26, RASSF6, AFM, AFP, EREG, ALB, EPGN, PARM1, RCHY1, ANKRD17, NAAA, COX18, CXCL1, CXCL2, CXCL3, CXCL8, CXCL10, AREG, ART3, CXCL9, MTHFD2L, LOC441025, PF4, PF4V1, PPEF2, PPBP, SDAD1, CXCL6, CXCL11, CXCL5, BTC, LOC728040, USO1, CDKL2, ADAMTS3, G3BP2) 0.361867413259076 42 0.115007650101554 0.961993291677284 2663 0.377917894000038 3 2 1 -6.82231615803755 LTS-009 chr4 77026834 77028769 1936 * ART3 NA 0 NA 1.669 1 NA NA NA NA NA LTS-009 chr4 77028770 77172985 144216 * c(FAM47E, FAM47E-STBD1, ART3, NUP54, SCARB2) 0.4127955118676 4 0.0430542293702566 1.35299572808248 275 0.504426935171333 5 3 2 -6.73934307079469 LTS-009 chr4 77172986 77177288 4303 * c(FAM47E, FAM47E-STBD1) NA 0 NA 1.127 1 NA NA NA NA NA LTS-009 chr4 77177289 88375674 11198386 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, RASGEF1B, FGF5, SEC31A, WDFY3, CNOT6L, C4orf22, GK2, COQ2, ANXA3, HNRNPD, CCDC158, SOWAHB, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, PLAC8, NUDT9, BMP2K, SEPT11, PRKG2, MAPK10, NA NA NA NA NA NA NA NA NA LTS-009 PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, MRPL1, BMP3, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, FAM175A, NAA11, GPAT3, STBD1, CCNG2, HNRNPDL) 0.362583701492157 83 0.109241596554914 1.0085283667235 6344 0.394081781759544 3 2 1 -6.77181451646815 LTS-009 NA NA NA NA LTS-009 chr4 88375675 88378968 3294 * NUDT9 NA 0 NA 0.675 1 NA NA NA NA NA LTS-009 chr4 88378969 88815369 436401 * c(DMP1, DSPP, IBSP, NUDT9, MEPE, SPARCL1) 0.395987717941891 10 0.0291128074145307 0.794703524028453 381 0.311162021425884 3 2 1 -6.95408238002383 LTS-009 chr4 88815370 88897993 82624 * SPP1 NA 0 NA 1.142 1 NA NA NA NA NA LTS-009 chr4 88897994 95186078 6288085 * c(PYURF, FAM13A, PPM1K, TIGD2, MMRN1, NAP1L5, FAM13A-AS1, GPRIN3, GRID2, CCSER1, ATOH1, HERC5, PKD2, HERC6, SMARCAD1, SNCA-AS1, SNCA, SPP1, HERC3, ABCG2) 0.371474334393014 70 0.0596846526669558 0.97384814066648 2043 0.794095635061209 3 2 1 -6.78885768216748 LTS-009 chr4 95186079 95191842 5764 * SMARCAD1 NA 0 NA 1.168 1 NA NA NA NA NA LTS-009 chr4 95191843 98107566 2915724 * c(PDLIM5, HPGDS, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.362647592277976 25 0.0401853207029632 1.25207449370308 834 0.59109214933191 3 2 1 -7.14796088534456 LTS-009 chr4 98107567 98107630 64 * character(0) NA 0 NA 0.831 1 NA NA NA NA NA LTS-009 chr4 98107631 119399900 21292270 * c(SNHG8, MIR1243, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, STPG2-AS1, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, EIF4E, ENPEP, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, CFI, LRIT3, PCNAP1, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, NA NA NA NA NA NA NA NA NA LTS-009 EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK) 0.37964271253582 198 0.069836350336584 1.00533768733161 8824 0.452183873964572 3 2 1 -6.75833433714077 LTS-009 NA NA NA NA LTS-009 chr4 119399901 119476651 76751 * CEP170P1 NA 0 NA 0.615437732280997 167 0.269087477385208 1 NA NA -5.76831481090917 LTS-009 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.95 1 NA NA NA NA NA LTS-009 chr4 119476981 155487843 36010863 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, LINC01095, MIR4799, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, PRDM5, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZNF827, SH3D19, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SYNPO2, EDNRA, ELF2, TIGD4, TMEM154, FABP2, FGB, FGF2, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, LINC01091, RNF175, NA NA NA NA NA NA NA NA NA LTS-009 GYPA, GYPB, GYPE, ANXA2P1, ANXA5, PRSS48, IL2, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, MYOZ2, GATB, PLRG1, EXOSC9, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, LARP1B, BBS7, FBXW7, MAML3, TMEM184C, ANKRD50, RNF150, PCDH10, METTL14, IL21, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, LOC645513, HHIP-AS1, C4orf51, TLR2, TRPC3, CETN4P, FAM160A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 UCP1, NDNF, FAT4, ARHGAP10, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PRMT9, LRBA, SEC24D) 0.390355940120012 180 0.0520262178450928 0.99135917981533 12733 0.366510863006346 3 2 1 -6.88693019818603 LTS-009 NA NA NA NA LTS-009 chr4 155487844 156136573 648730 * c(RBM46, FGA, FGB, FGG, NPY2R, LRAT) 0.401637431428014 6 0.0574784017407119 0.829498014439018 418 0.31408148670708 3 2 1 -6.93862951761875 LTS-009 chr4 156136574 159140558 3003985 * c(CTSO, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, TMEM144, PDGFC, TDO2, MAP9) 0.401809409485804 39 0.0471527079577227 1.11100848979873 1210 0.842009098493883 3 2 1 -6.80722191118116 LTS-009 chr4 159140559 159154043 13485 * TMEM144 NA 0 NA 0.699 1 NA NA NA NA NA LTS-009 chr4 159154044 167024370 7870327 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, KLHL2, CPE, FAM218A, C4orf45, TRIM60, C4orf46, TMEM192, ETFDH, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, PPID, MARCH1, TMEM144, TMA16, FSTL5, FNIP2, RXFP1, MSMO1, MIR578, TLL1, TKTL2, NAF1, RAPGEF2) 0.390891722223689 49 0.0948935762648164 0.923039644390361 2217 0.356096716357621 3 2 1 -7.10176082568887 LTS-009 chr4 167024371 170511977 3487607 * c(ANXA10, PALLD, NEK1, SPOCK3, DDX60, SH3RF1, TLL1, CBR4, DDX60L) 0.391867257019392 49 0.0569219838454174 1.15500837615668 1271 0.588611833976325 3 2 1 -6.82512079036566 LTS-009 chr4 170511978 189068752 18556775 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, SCRG1, WDR17, CLCN3, ZFP42, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, CCDC110, FAM149A, FBXO8, PDLIM3, GPM6A, CYP4V2, F11-AS1, LINC01098, SLC25A4, HMGB2, HPGD, LOC339975, TRIML1, ANKRD37, ING2, IRF2, KLKB1, LOC389247, HELT, FAM92A1P2, C4orf47, GALNTL6, MTNR1A, NEK1, AADAT, GALNT7, NA NA NA NA NA NA NA NA NA LTS-009 CLDN22, HPF1, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, FLJ38576, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, SAP30, LOC90768, HAND2, MFAP3L) 0.372442036353095 142 0.077696289584788 0.984659120911099 5911 0.440905617333769 3 2 1 -6.83580840491985 LTS-009 NA NA NA NA LTS-009 chr4 189660530 189662998 2469 * character(0) NA 0 NA 0.570893279965055 56 0.263214079455064 1 NA NA -5.76441036038637 LTS-009 chr4 189662999 190946065 1283067 * FRG1 0.326594698895869 8 0.0939079146215665 0.895728232338396 98 0.362442515882985 3 2 1 -7.07454821421918 LTS-009 chr4 190946066 190981567 35502 * character(0) NA 0 NA 0.801596919932546 17 0.353993124725525 2 NA NA -5.7644188992804 LTS-009 chr5 140347 171569 31223 * PLEKHG4B 0.497 1 NA 1.23344773666127 97 0.267903551543374 4 4 0 -5.76445378627511 LTS-009 chr5 171570 825338 653769 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3, ZDHHC11) 0.410486769311691 104 0.0758114621979913 1.20256371521328 1179 0.493270833917755 5 3 2 -6.80348373131944 LTS-009 chr5 825339 833821 8483 * ZDHHC11 NA 0 NA 0.297 1 NA NA NA NA NA LTS-009 chr5 833822 840867 7046 * ZDHHC11 0.41460702775254 3 0.112837641473638 0.544032177151555 45 0.299335062760746 2 1 1 -6.76794825222628 LTS-009 chr5 840868 843710 2843 * ZDHHC11 NA 0 NA 1.475 1 NA NA NA NA NA LTS-009 chr5 843711 1160540 316830 * c(LOC100506688, MIR4635, SLC12A7, BRD9, ZDHHC11, NKD2, TRIP13) 0.451023483435557 31 0.0373431918627027 1.27900240378081 518 0.515897426943786 4 2 2 -6.79414217151048 LTS-009 chr5 1160541 1201693 41153 * character(0) NA 0 NA 0.753 1 NA NA NA NA NA LTS-009 chr5 1201694 7835687 6633994 * c(MIR4277, MIR4278, MIR4454, MIR4457, ADCY2, PAPD7, UBE2QL1, C5orf49, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, LINC01019, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, NDUFS6, IRX4, NSUN2, MRPL36, SLC6A3, SRD5A1, TERT, SDHAP3, LOC728613, IRX1, LPCAT1, CLPTM1L, MED10) 0.460657507911074 39 0.0304044486765545 1.00340564158861 2122 0.348180560329017 4 2 2 -8.2899350503678 LTS-009 chr5 7835688 7850953 15266 * C5orf49 NA 0 NA 1.691 1 NA NA NA NA NA LTS-009 chr5 7850954 17276191 9425238 * c(SNORD123, LOC100130744, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4637, MIR4636, MARCH6, BASP1, C5orf49, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, FBXL7, LOC285692, LOC285696, LINC01194, MARCH11, MTRR, MYO10, TAS2R1, FAM134B, FAM105A, ANKH, ANKRD33B, TRIO, LOC729506, FASTKD3, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.449903245998203 73 0.0654205049334949 1.29171846476716 3248 0.512325319570855 4 2 2 -6.77309206477916 LTS-009 chr5 17276192 31313620 14037429 * c(CDH6, CDH9, CDH10, CDH12, CDH18, BASP1, LOC340107, LOC401177, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.469879775001657 6 0.0166783292528558 1.0482828216834 545 0.302165523170904 4 2 2 -10.2933384613807 LTS-009 chr5 31313621 31316226 2606 * CDH6 NA 0 NA 2.164 1 NA NA NA NA NA LTS-009 chr5 31316227 39202801 7886575 * c(CDH6, MIR4279, MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, SUB1, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, AMACR, RICTOR, FYB, NIPBL, RAI14, GDNF, DROSHA, LOC340113, IL7R, LIFR, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRLR, RAD1, GOLPH3, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, SPEF2, ADAMTS12, OSMR, LMBRD2, NUP155) 0.453289293959942 154 0.0709169169372554 1.26462522610726 6436 0.471256194233091 4 2 2 -6.76009279214003 LTS-009 chr5 39202802 45261064 6058263 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, HCN1, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6) 0.439363794790441 56 0.0696240717254913 1.17401548992779 2775 0.549229491620986 4 2 2 -6.77947178299628 LTS-009 chr5 45261065 45696278 435214 * HCN1 NA 0 NA 1.13891867774945 83 0.447313124275363 4 NA NA -5.77559583484724 LTS-009 chr5 49692017 50040890 348874 * c(EMB, PARP8) 0.474 1 NA 0.830758061011242 117 0.322338619814249 2 2 0 -5.76811789421469 LTS-009 chr5 50040891 52157399 2116509 * c(ISL1, ITGA1, PELO, LOC642366, PARP8) 0.424502599567957 5 0.103589574765031 0.980595138632916 410 0.370049507198757 3 2 1 -6.82604033691966 LTS-009 chr5 52157400 52160602 3203 * ITGA1 NA 0 NA 0.721 1 NA NA NA NA NA LTS-009 chr5 52160603 61783786 9623184 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, RNF138P1, KIF2A, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, SMIM15, GPBP1, MIR449B, MIR581, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.231082436284834 87 0.0557767799779619 0.788638095352823 4414 0.316081194009925 2 2 0 -6.78717142290221 LTS-009 chr5 61783787 61785151 1365 * IPO11 NA 0 NA 2.557 1 NA NA NA NA NA LTS-009 chr5 61785152 61874685 89534 * c(LRRC70, IPO11-LRRC70, IPO11) NA 0 NA 1.26955615797689 63 0.501132183598088 4 NA NA -5.76446436108982 LTS-009 chr5 61874686 61875185 500 * c(LRRC70, IPO11-LRRC70, IPO11) NA 0 NA 0.504 1 NA NA NA NA NA LTS-009 chr5 61875186 61923779 48594 * c(LRRC70, IPO11-LRRC70, IPO11) NA 0 NA 0.549560034064705 68 0.327490121425449 1 NA NA -5.76473998918727 LTS-009 chr5 61923780 68706460 6782681 * c(FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, CCDC125, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, TRAPPC13, CCNB1, MRPS36) 0.216424359275442 51 0.0685141118997522 0.813392638776746 3168 0.345973335877159 2 2 0 -6.74937903362658 LTS-009 chr5 68706461 68709888 3428 * RAD17 NA 0 NA 0.408 1 NA NA NA NA NA LTS-009 chr5 68709889 69373278 663390 * c(NA, OCLN, MARVELD2, RAD17, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.644300410401108 210 0.3157956604828 1 NA NA -5.8253665001865 LTS-009 chr5 69373279 70265493 892215 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.252550557758563 47 0.711493583480519 0 NA NA -5.8604841792432 LTS-009 chr5 70265494 70307096 41603 * c(GUSBP9, NAIP) NA 0 NA 0.877 1 NA NA NA NA NA LTS-009 chr5 70307097 140084156 69777060 * c(GUSBP9, SRA1, VTRNA2-1, MIR874, KIAA1024L, ARRDC3-AS1, CKMT2-AS1, LOC100133050, LOC100289230, LOC100289673, MIR1289-2, TMED7-TICAM2, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, MIR3936, MIR3661, LINC01024, STARD4-AS1, LOC100505841, TMEM161B-AS1, MIR4804, MIR4633, MIR4461, MIR3977, MIR4460, MIR4803, LINC01023, EDIL3, COL4A3BP, NREP-AS1, C5orf66, RAD50, KIF20A, LHFPL2, APBB3, CDO1, NSA2, POLR3G, CETN3, NA NA NA NA NA NA NA NA NA LTS-009 IQGAP2, SEC24A, BRD8, HNRNPA0, CHD1, KIF3A, SLC35A4, EPB41L4A-AS1, MARCH3, FCHO2, CKMT2, LYSMD3, LEAP2, AP3S1, SLCO6A1, PRRC1, JMY, ZNF474, POU5F2, TMEM171, TMEM174, POC5, STARD4, WDR36, ACOT12, SOWAHA, SHROOM1, C5orf24, COX7C, CRHBP, HAPLN1, DCANP1, CSF2, CSNK1G3, VCAN, CTNNA1, MGC32805, CEP120, SLC25A48, TMEM167A, MBLAC2, TMEM161B, SRFBP1, ZMAT2, ARSK, FAM81B, CCDC112, DMXL1, PAPD4, DCP2, LIX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 ZNF366, FAM151B, S100Z, ADAMTS19, DHFR, HBEGF, EFNA5, EGR1, SPATA24, DNAJC18, LINC01554, CMYA5, LVRN, ETF1, F2R, F2RL1, F2RL2, FBN2, FER, RHOBTB3, ELL2, SV2C, FSTL4, MRPS27, SEPT8, PPIP5K2, ACSL6, JADE2, HARS2, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, TNFAIP8, LRRTM2, FAM169A, FBXL21, KLHL3, GDF9, GFRA3, SNORD63, SNORA74A, RNU5E-1, PKD2L2, UQCRQ, AFF4, GLRX, KIAA0825, GPR150, DTWD2, NBPF22P, RGMB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SLC27A6, SNX24, GTF2H2, DMGDH, HARS, HEXB, HINT1, HMGCR, RFESD, APC, HSD17B4, HSPA4, HSPA9, CHSY3, TMEM173, FAM170A, C5orf66-AS2, LOC340074, ANKRD34B, FAM174A, MTX3, CATSPER3, SLCO4C1, TICAM2, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, KCNN2, TNPO1, TEX43, LOC389332, PROB1, LECT2, LMNB1, LNPEP, C5orf63, LOX, ANKHD1-EIF4EBP3, MIR9-2, SMAD5, ARSB, MAN2A1, MAP1B, MCC, MEF2C, CRSP8P, NR2F1-AS1, C5orf56, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 MSH3, NAIP, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, ALDH7A1, RGMB-AS1, PAM, TMED7, ISOC1, SAR1B, PCSK1, MZB1, PAIP2, CDKL3, GCNT4, FAM13B, FAM53C, REEP2, PRR16, COMMD10, POLK, CXXC5, RAPGEF6, ERAP1, KDM3B, PHAX, PFDN1, PGGT1B, PITX1, PMCHL2, EPB41L4A-AS2, PPIC, ZCCHC10, GIN1, WDR55, ANKHD1, AGGF1, PPP2CA, WDR41, LOC553103, TMCO6, TRIM36, RIOK2, BDP1, FEM1C, C5orf15, CDC42SE2, TRPC7, ZNF608, SEMA6A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 ARRDC3, ANKRA2, PURA, RASA1, RASGRF2, CTXN3, RPS23, BHMT, MCCC2, EPB41L4A, ERAP2, ECSCR, ARHGEF28, TMEM232, SIL1, ARL14EPL, LINC01184, LOC644936, CCNI2, LINC00461, LOC647859, FBXL17, YTHDC2, SKP1, SNORA13, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, SPOCK1, SRP19, SCARNA18, SNORA47, BTF3, TBCA, MIR583, TCF7, NR2F1, TGFBI, THBS4, SNHG4, LINC00992, MEIKIN, ZBED3-AS1, ANKDD1B, UBE2B, UBE2D2, VDAC1, WNT8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 XRCC4, ST8SIA4, REEP5, TXNDC15, MCTP1, PTCD2, CAMK4, CAMLG, CAST, NUDT12, SLC4A9, ATG10, NME5, SPATA9, TSSK1B, FAM172A, ADGRV1, PCBD2, UTP15, ZCCHC9, PSD2, SLF1, ZBED3, GFM2, CYSTM1, MEGF10, SPZ1, ENC1, AP3B1, TSLP, PDLIM4, PDE8B, EIF4EBP3, CDC23, P4HA2, CCNH, C5orf30, LYRM7, SLC25A46, CDKN2AIPNL, ATG12, ATP6AP1L, CD14, NREP, PRDM6, RAB9BP1, FTMT, HOMER1, MYOT, SCAMP1, NRG2, CXCL14, H2AFY, SMAD5-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CARTPT, SNCAIP, FNIP1, TTC37, ZFYVE16, MATR3, PJA2, DDX46, CDC25C, SLC23A1) 0.212902014765539 527 0.0611580024826483 0.793433301587815 32850 0.350048381340211 2 2 0 -6.73693889535781 LTS-009 NA NA NA NA LTS-009 chr5 140084157 140085141 985 * ZMAT2 NA 0 NA 0.628 1 NA NA NA NA NA LTS-009 chr5 140085142 140553623 468482 * c(ZMAT2, PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PCDHA9) 0.179832127434508 46 0.061684862180459 0.689396729826915 1197 0.288905494185693 2 2 0 -6.9908611797536 LTS-009 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.283 1 NA NA NA NA NA LTS-009 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.140428823383297 3 0.0891758562242793 0.234109078773987 68 0.304286163240454 4 4 0 -6.80940209541888 LTS-009 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.686 1 NA NA NA NA NA LTS-009 chr5 140559822 140789275 229454 * c(PCDHB18P, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.194042956693684 38 0.0450595307196724 0.661813265102726 1205 0.290715322771983 2 2 0 -6.91525463700473 LTS-009 chr5 140789276 140789419 144 * c(PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB4, PCDHGA8) NA 0 NA 1.105 1 NA NA NA NA NA LTS-009 chr5 140789420 147513647 6724228 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, C5orf46, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA LTS-009 PCDHGA1, PCDHGB8P, KCTD16, HMHB1, GRXCR2, ARAP3, SPINK1, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.200039212810107 99 0.0703163801753528 0.820072312269059 4348 0.296181315448935 2 2 0 -6.8011666214561 LTS-009 NA NA NA NA LTS-009 chr5 147513648 147516508 2861 * SPINK5 NA 0 NA 0.448 1 NA NA NA NA NA LTS-009 chr5 147516509 148207865 691357 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.213075563283609 13 0.0294777186606409 0.639335761464517 439 0.244897263251045 2 2 0 -7.05026122819758 LTS-009 chr5 148207866 150158512 1950647 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, ADRB2, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, SMIM3, MYOZ3, CD74) 0.221874638803299 58 0.0410905334830758 0.855993061863551 3567 0.502117141480556 2 2 0 -6.77420023977967 LTS-009 chr5 150158513 150174909 16397 * SMIM3 NA 0 NA 0.734 1 NA NA NA NA NA LTS-009 chr5 150174910 157187577 7012668 * c(C5orf52, MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, SOX30, LSM11, ZNF300P1, SLC36A2, PPP1R2P3, FAM71B, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, NIPAL4, ITK, SAP30L-AS1, FNDC9, MFAP3, ATOX1, THG1L, GALNT10, NMUR2, SGCD, SPARC, SAP30L, HAVCR2, SMIM3, ADAM19, TIMD4, ZNF300, CNOT8, HAND1, MED7) 0.220840897498934 128 0.0552418665184026 0.742876743155015 4960 0.26957044573146 2 2 0 -7.00264286943618 LTS-009 chr5 157187578 159437851 2250274 * c(UBLCP1, ADRA1B, RNF145, EBF1, LOC285626, LOC285627, IL12B, TTC1, CLINT1) 0.185880464715195 5 0.048615841039727 0.927100962088987 558 0.478567759445771 3 3 0 -6.8753000295139 LTS-009 chr5 159437852 159462134 24283 * TTC1 NA 0 NA 0.769 1 NA NA NA NA NA LTS-009 chr5 159462135 167303256 7841122 * c(MIR3142, SLU7, PWWP2A, C1QTNF2, NUDCD2, FABP6, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, MIR146A, TENM2, ZBED8, TTC1, CCNJL, CCNG1, PTTG1) 0.213354354344677 26 0.0643591007251798 0.734019458367742 1517 0.287786869926197 2 2 0 -7.08383213358732 LTS-009 chr5 167303257 167379508 76252 * TENM2 NA 0 NA 0.925 1 NA NA NA NA NA LTS-009 chr5 167379509 169028349 1648841 * c(MIR103B1, WWC1, FBLL1, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, SLIT3, MIR585, PANK3) 0.232551469173156 12 0.0498762103977073 0.865101864013542 1084 0.313306997786119 2 2 0 -6.87557769215712 LTS-009 chr5 169028350 170241065 1212716 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, GABRP, LINC01366, KCNIP1, KCNMB1, LCP2, SPDL1) 0.228186652150732 10 0.045154180315891 0.63204011852221 889 0.206297052290338 2 2 0 -7.5769670638668 LTS-009 chr5 170241066 170288952 47887 * RANBP17 NA 0 NA 1.047 1 NA NA NA NA NA LTS-009 chr5 170288953 173040318 2751366 * c(LOC100268168, MIR3912, NKX2-5, CREBRF, DUSP1, FBXW11, EFCAB9, SH3PXD2B, LOC285593, TLX3, NPM1, RPL26L1, NEURL1B, ERGIC1, RANBP17, BNIP1, SNORA74B, STK10, STC2, FGF18, ATP6V0E1, BOD1, UBTD2) 0.218568688525338 23 0.0856143342510412 0.835871476188343 1896 0.355558849739098 2 2 0 -6.76531199178582 LTS-009 chr5 173040319 173043116 2798 * BOD1 NA 0 NA 1.091 1 NA NA NA NA NA LTS-009 chr5 173043117 173416600 373484 * c(C5orf47, CPEB4, BOD1) NA 0 NA 1.02747296921015 263 0.631919705759392 3 NA NA -5.76442239273753 LTS-009 chr5 173416601 173425102 8502 * C5orf47 NA 0 NA 0.54 1 NA NA NA NA NA LTS-009 chr5 173425103 175386683 1961581 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.259014280065696 20 0.0717980354517924 0.686097402836759 504 0.210713293624389 2 2 0 -7.48368109173316 LTS-009 chr5 175386684 175512083 125400 * c(FAM153B, THOC3) NA 0 NA 0.267527442199203 137 0.38981332562153 0 NA NA -5.79428186827957 LTS-009 chr5 175512084 175512085 2 * FAM153B NA 0 NA 0.459 1 NA NA NA NA NA LTS-009 chr5 175512086 175740280 228195 * c(LOC100507387, FAM153B, SIMC1, LOC643201) NA 0 NA 0.555282214549656 91 0.257863387272654 1 NA NA -5.76564343032407 LTS-009 chr5 175740281 175740308 28 * SIMC1 NA 0 NA 0.7 1 NA NA NA NA NA LTS-009 chr5 175740309 176724053 983745 * c(MIR4281, GPRIN1, CLTB, HIGD2A, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, ARL10, HK3, SIMC1, NOP16, UIMC1, CDHR2, KIAA1191, NSD1, SNCB, UNC5A) 0.237010410166859 32 0.0399475462527162 0.740560489944924 1859 0.251703259988194 2 2 0 -6.95746380625422 LTS-009 chr5 176724054 176724056 3 * NSD1 NA 0 NA 0.883 1 NA NA NA NA NA LTS-009 chr5 176724057 177099262 375206 * c(RGS14, LMAN2, B4GALT7, DBN1, LOC202181, F12, PRELID1, GRK6, PRR7-AS1, PFN3, DDX41, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.229353799140117 21 0.0731051428065215 0.854245667244989 1264 0.280812193102941 2 2 0 -6.77027686865905 LTS-009 chr5 177099263 177150966 51704 * c(LOC202181, FAM153A) NA 0 NA 0.349 1 NA NA NA NA NA LTS-009 chr5 177150967 177221326 70360 * FAM153A 0.40714808807566 2 0.00989949493661164 0.454464939039714 89 0.34291896900786 5 3 2 -7.65694343279508 LTS-009 chr5 177221327 177236342 15016 * character(0) NA 0 NA 0.51 1 NA NA NA NA NA LTS-009 chr5 177236343 180687212 3450870 * c(MIR1229, MIR4638, HEIH, RACK1, BTNL3, MGAT4B, ZNF354B, OR2Y1, BTNL9, TBC1D9B, N4BP3, FLT4, RASGEF1C, OR2V1, OR2V2, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, SNORD95, SNORD96A, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, TRIM7, CANX, TRIM52, PHYKPL, SQSTM1, NA NA NA NA NA NA NA NA NA LTS-009 TRIM41, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.220765969031131 119 0.0598078237935886 0.786178763919077 4394 0.305462317987765 2 2 0 -6.74188302857856 LTS-009 NA NA NA NA LTS-009 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.827255958735175 17 0.180835032069368 2 NA NA -5.7644347970055 LTS-009 chr6 203389 203722 334 * character(0) 0.412 1 NA 0.651046256020436 7 0.149529739039239 1 1 0 -5.76457209208065 LTS-009 chr6 203723 499830 296108 * c(IRF4, EXOC2, DUSP22) 0.373305018977362 17 0.0582880776831764 0.891121504521798 322 0.441128270245487 3 2 1 -6.78435645392293 LTS-009 chr6 499831 499916 86 * EXOC2 NA 0 NA 1.249 1 NA NA NA NA NA LTS-009 chr6 499917 10397574 9897658 * c(SCARNA27, MIR3691, LOC100506207, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SLC35B3, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, NA NA NA NA NA NA NA NA NA LTS-009 BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, RIOK1, RIPK1, PRPF4B, FOXQ1, CDYL, LY86, EEF1E1) 0.435282404141604 121 0.0581948434757113 1.08672585017443 4025 0.39640339364474 3 2 1 -7.25277045069988 LTS-009 NA NA NA NA LTS-009 chr6 10397575 10415572 17998 * c(TFAP2A-AS1, TFAP2A) NA 0 NA 1.55638139092338 105 0.805443795261971 5 NA NA -5.7644565532008 LTS-009 chr6 10415573 10419596 4024 * c(TFAP2A-AS1, TFAP2A) NA 0 NA 1.113 1 NA NA NA NA NA LTS-009 chr6 10419597 12164173 1744577 * c(TMEM170B, ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, TMEM14B, ADTRP, GCM2) 0.425413133043478 36 0.083152694694283 0.998557984262725 1658 0.402233849193165 3 2 1 -6.86061550426246 LTS-009 chr6 12164174 21232032 9067859 * c(LOC100130357, RANBP9, MIR4639, CAP2, MBOAT1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, MYLIP, HIVEP1, ID4, JARID2, NHLRC1, STMND1, TBC1D7, NOL7, FAM8A1, GFOD1, CDKAL1, ATXN1, MCUR1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, CD83, NUP153) 0.435042985185884 87 0.0460181559418645 1.09840750897221 3267 0.396132277119284 4 2 2 -7.26449517759482 LTS-009 chr6 21232033 22570838 1338806 * c(HDGFL1, CASC15, CDKAL1, PRL, SOX4, NBAT1) 0.461870076741277 2 0.00565685424949246 1.4460008661601 189 0.613511127969774 4 2 2 -11.1156302805865 LTS-009 chr6 24134484 25669892 1535409 * c(SCGN, NRSN1, GPLD1, KAAG1, GMNN, DCDC2, TDP2, CARMIL1, ACOT13, MRS2, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.426533148965525 35 0.0487695317477086 1.02415254862658 1578 0.915402497324285 4 2 2 -6.81567339059118 LTS-009 chr6 25669893 25917362 247470 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) NA 0 NA 0.784449254222416 313 0.195658284964632 2 NA NA -5.76521913900821 LTS-009 chr6 25917363 25918714 1352 * SLC17A2 NA 0 NA 1.096 1 NA NA NA NA NA LTS-009 chr6 25918715 26273689 354975 * c(SLC17A2, TRIM38, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.424336344932074 15 0.0558217400899208 1.12486058993609 634 0.32891291928639 4 2 2 -6.79627648250859 LTS-009 chr6 26273690 26285291 11602 * character(0) NA 0 NA 0.962 1 NA NA NA NA NA LTS-009 chr6 26285292 26600330 315039 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HCG11, BTN2A3P, BTN1A1, HIST1H4H) NA 0 NA 0.879250169843384 645 0.32821277794817 2 NA NA -5.78178213348718 LTS-009 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.03 1 NA NA NA NA NA LTS-009 chr6 26636496 26638838 2343 * ZNF322 NA 0 NA 0.401654944737048 50 0.181939223985621 0 NA NA -5.76549855536507 LTS-009 chr6 26638839 28971764 2332926 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-009 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.409 1 NA 0.923037502493593 1937 0.308436500062974 3 3 0 -5.91518473306765 LTS-009 NA NA NA NA LTS-009 chr6 28971765 29645170 673406 * character(0) NA 0 NA 0.713323612082618 783 0.275681010006026 2 NA NA -5.82747537593309 LTS-009 chr6 29645171 29691013 45843 * character(0) NA 0 NA 1.09 1 NA NA NA NA NA LTS-009 chr6 29691014 30978561 1287548 * character(0) NA 0 NA 1.05659880309623 2757 1.72267045576821 3 NA NA -5.76468722988453 LTS-009 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.75 1 NA NA NA NA NA LTS-009 chr6 30993285 31000040 6756 * character(0) 0.431 1 NA 0.691735373156293 87 0.134007770663629 2 2 0 -5.76884444676401 LTS-009 chr6 31000041 31962204 962164 * character(0) 0.412926721470779 37 0.0502866856210543 1.11864375599548 3475 10.0900046500136 5 3 2 -6.73599131590518 LTS-009 chr6 31962205 32013859 51655 * character(0) 0.40871834822998 7 0.0644640911486313 0.752720823904729 267 0.362108962983391 3 2 1 -6.82107156237706 LTS-009 chr6 32013860 35423651 3409792 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, FANCE, C6orf1, LEMD2, SCUBE3, ANKS1A, SPDEF, GRM4, PACSIN1, HLA-DQA1, HLA-DRB5, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, ZNF76, UQCC2) 0.401503531762576 474 0.0730754723305754 1.10490663947248 6806 1.2311634166491 3 2 1 -6.7638857091154 LTS-009 chr6 35423652 36508075 1084424 * c(MIR5690, STK38, SLC26A8, CLPS, MAPK14, FANCE, ARMC12, KCTD20, PXT1, LHFPL5, FKBP5, BRPF3, LOC285847, PNPLA1, CLPSL1, CLPSL2, C6orf222, RPL10A, ETV7, MAPK13, SRPK1, TEAD3, TULP1) 0.431252878289039 22 0.107093972975229 0.986892740402361 1586 0.395084669241438 3 2 1 -6.83801199368884 LTS-009 chr6 36508076 36564434 56359 * c(STK38, SRSF3) NA 0 NA 1.125 1 NA NA NA NA NA LTS-009 chr6 36564435 38520624 1956190 * c(MIR3925, MIR4462, CDKN1A, BTBD9, CCDC167, TMEM217, FGD2, PI16, C6orf89, CMTR1, MTCH1, MDGA1, RAB44, PPIL1, PIM1, TBC1D22B, CPNE5, ZFAND3, SRSF3, RNF8) 0.430717807291981 40 0.0495041049838941 1.11507406401375 1885 0.400078149519172 4 2 2 -6.84364567734849 LTS-009 chr6 38520625 38545302 24678 * BTBD9 NA 0 NA 0.871 1 NA NA NA NA NA LTS-009 chr6 38545303 39304381 759079 * c(LOC100131047, BTBD9, DNAH8, KIF6, GLO1, GLP1R, SAYSD1, KCNK16, KCNK5, KCNK17) 0.396478138927903 11 0.133172273936636 0.947313929705114 1010 0.319523156559491 3 2 1 -6.76195017382684 LTS-009 chr6 39304382 39311035 6654 * KIF6 NA 0 NA 1.374 1 NA NA NA NA NA LTS-009 chr6 39311036 49479793 10168758 * c(LINC01512, TOMM6, ANKRD66, MIR4647, MIR4641, MIR4642, RCAN2, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, FOXP4, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, ADGRF2, TSPO2, UNC5CL, ENPP4, CUL9, UBR2, DAAM2, GLTSCR1L, CD2AP, ZNF318, YIPF3, USP49, ADGRF1, GNMT, TNFRSF21, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, NA NA NA NA NA NA NA NA NA LTS-009 HSP90AB1, TREML1, TREML3P, SLC35B2, GLYATL3, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MUT, NFKBIE, NFYA, MRPL2, CYP39A1, PEX6, PGC, CLIC5, TREM2, TREM1, POLH, GTPBP2, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, LRFN2, AARS2, XPO5, PTK7, ENPP5, PRPH2, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, BYSL, TDRG1, VEGFA, PLA2G7, TFEB, TREML2, TTBK1, SUPT3H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 RUNX2, RRP36, CCND3, ABCC10, KLC4, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.423092304677854 160 0.07764967287834 1.07383829033757 9349 0.38029951147259 3 2 1 -6.95719745635475 LTS-009 NA NA NA NA LTS-009 chr6 49479794 49483310 3517 * GLYATL3 NA 0 NA 0.868 1 NA NA NA NA NA LTS-009 chr6 49483311 52133909 2650599 * c(CRISP3, IL17F, C6orf141, CRISP1, DEFB110, DEFB112, DEFB113, DEFB114, IL17A, GLYATL3, MIR206, MCM3, MIR133B, PGK2, PKHD1, RHAG, TFAP2B, CRISP2, TFAP2D) 0.427426758772951 30 0.0430472074467731 0.883503587063135 1158 0.516827409183565 2 1 1 -6.84099156422841 LTS-009 chr6 52133910 56918949 4785040 * c(MIR5685, MLIP-IT1, EFHC1, BEND6, GSTA5, FAM83B, ICK, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, GFRAL, TRAM2-AS1, KLHL31, MCM3, HMGCLL1, LRRC1, KIAA1586, ELOVL5, RPS16P5, BMP5, DST, LOC730101, GSTA7P, COL21A1, GCM1, PAQR8, MLIP, TRAM2) 0.432568671410283 70 0.0375727203802198 0.982609704823827 3235 0.310918811335552 3 2 1 -7.54678657515665 LTS-009 chr6 56918950 56967858 48909 * c(ZNF451, KIAA1586) 0 1 NA 0.986482789951656 89 0.407319876594863 3 3 0 -5.76463983710614 LTS-009 chr6 56967859 57512678 544820 * c(ZNF451, RAB23, PRIM2, BAG2) 0.330752415071937 45 0.0841488099869643 1.00316713375214 494 0.443934373585797 4 3 1 -6.8248903205596 LTS-009 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.856301915291805 19 0.306716633991786 2 NA NA -5.79612304328463 LTS-009 chr6 62390154 62407067 16914 * KHDRBS2 0.472 1 NA 0.760228312667331 23 0.386383633521096 2 2 0 -5.76455275335388 LTS-009 chr6 62407068 74214299 11807232 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, KHDRBS2, RIMS1, PHF3, MTO1, DPPA5, EYS, NA, MIR30A, MIR30C2, LOC441155, OOEP, SLC25A51P1, LGSN, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.415235657231698 65 0.101913724353192 0.780321052129636 3138 0.329685674405672 2 1 1 -6.79094304084859 LTS-009 chr6 74214300 74214574 275 * character(0) NA 0 NA 1.706 1 NA NA NA NA NA LTS-009 chr6 74214575 83752009 9537435 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, EEF1A1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, MYO6, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.449416023562101 34 0.0375769798116441 0.933248958458164 3071 0.378222556647436 2 1 1 -7.65191991980489 LTS-009 chr6 83752010 106553683 22801674 * c(LIN28B-AS1, TSTD3, MIR2113, MIR4464, MIR4643, SYNCRIP, SLC35A1, FUT9, CGA, PNRC1, ASCC3, BVES, MRAP2, RWDD2A, KLHL32, CNR1, RIPPLY2, PM20D2, SRSF12, CFAP206, BVES-AS1, PRSS35, EPHA7, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, UFL1, ORC3, MMS22L, GABRR1, GABRR2, PNISR, FBXL4, SNORD50A, GRIK2, NDUFAF4, HTR1E, GJB7, SNHG5, LIN28B, ME1, NT5E, CYB5R4, UBE2J1, COQ3, PGM3, POU3F2, AKIRIN2, PREP, NA NA NA NA NA NA NA NA NA LTS-009 RARS2, SMIM8, LYRM2, SNX14, HACE1, RRAGD, PRDM13, BACH2, PRDM1, LINC01590, POPDC3, TSG1, SIM1, MAP3K7, SNORD50B, MCHR2-AS1, MANEA, GPR63, SPACA1, MCHR2, FAXC, GJA10, USP45, RNGTT, CCNC, UBE3D, TBX18, FHL5, SNAP91, CASP8AP2) 0.444201404833535 158 0.0549107376336723 0.796374946383376 8014 0.335566829730815 2 1 1 -6.73828860558955 LTS-009 NA NA NA NA LTS-009 chr6 106553684 117073559 10519876 * c(TRAPPC3L, LOC100422737, LOC100996634, TRAF3IP2, SEC63, GTF3C6, SLC16A10, COL10A1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, FOXO3, CDK19, TSPYL4, FRK, LACE1, FYN, FAM26E, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, OSTM1, DSE, HDAC2, RSPH4A, KPNA5, LINC00222, LAMA4, MARCKS, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, SOBP, QRSL1, PDSS2, BEND3, REV3L, NA NA NA NA NA NA NA NA NA LTS-009 FAM229B, PRDM1, TRAF3IP2-AS1, MICAL1, SMPD2, NR2E1, TSPYL1, TPI1P3, METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.435914331969182 96 0.0888736530482479 0.856982380975954 6601 0.371567400577198 2 1 1 -6.97419594181653 LTS-009 NA NA NA NA LTS-009 chr6 117073560 117073661 102 * FAM162B NA 0 NA 0.685 1 NA NA NA NA NA LTS-009 chr6 117073662 119501601 2427940 * c(LOC100287632, NUS1, FAM162B, GPRC6A, RFX6, SLC35F1, BRD7P3, VGLL2, MCM9, ASF1A, DCBLD1, CEP85L, MAN1A1, PLN, GOPC, ROS1, MIR548B, FAM184A) 0.439739216833592 22 0.0465441186226034 0.756234362136951 1562 0.284389476897233 2 1 1 -6.77976982094971 LTS-009 chr6 119501602 119509576 7975 * MAN1A1 NA 0 NA 0.874 1 NA NA NA NA NA LTS-009 chr6 119509577 127647717 8138141 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, LOC285762, HSF2, CENPW, MAN1A1, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3) 0.441207001739554 61 0.0890221836416512 0.873934750878696 2211 0.370341625108453 2 1 1 -7.02998784873215 LTS-009 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.564 1 NA NA NA NA NA LTS-009 chr6 127648124 133111021 5462898 * c(SMLR1, LINC01013, TMEM200A, SLC18B1, TAAR1, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, TAAR6, C6orf58, ARG1, SOGA3, THEMIS, LAMA2, ENPP1, ENPP3, VNN3, ECHDC1, PTPRK, CTAGE9, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, KIAA0408) 0.439128637543648 54 0.070940482529339 0.790742399596487 3049 0.31766011366602 2 1 1 -6.73438225343678 LTS-009 chr6 133111022 133111358 337 * SLC18B1 NA 0 NA 1.318 1 NA NA NA NA NA LTS-009 chr6 133111359 139135726 6024368 * c(LOC100130476, LINC00271, NHEG1, MIR3145, MIR3662, GVQW2, HBS1L, MTFR2, IL22RA2, SLC18B1, LINC01312, SLC2A12, LINC01010, OLIG3, EYA4, HEBP2, CCDC28A, PDE7B, LINC00326, SLC35D3, IFNGR1, ECT2L, HMGA1P7, MAP3K5, FLJ46906, MYB, PEX7, IL20RA, AHI1, ARFGEF3, NHSL1, PBOV1, SNORA33, RPS12, PERP, SGK1, ALDH8A1, TCF21, TNFAIP3, MAP7, TBPL1, BCLAF1) 0.432307629655793 55 0.0750335861947106 0.877127780928788 3302 0.375794612030046 2 1 1 -6.97061357267357 LTS-009 chr6 139135727 139143940 8214 * ECT2L NA 0 NA 0.678 1 NA NA NA NA NA LTS-009 chr6 139143941 139145397 1457 * ECT2L 0.405 1 NA 0.437510889161367 39 0.202957907657479 0 0 0 -5.76568960166095 LTS-009 chr6 139145398 139145473 76 * ECT2L NA 0 NA 0.68 1 NA NA NA NA NA LTS-009 chr6 139145474 147556515 8411042 * c(LOC100132735, MIR3668, LINC01277, LOC100507557, MIR4465, CITED2, RAB32, ADAT2, STXBP5, LOC153910, ZC2HC1B, TXLNB, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, ECT2L, NMBR, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, REPS1, PEX3, STX11, PHACTR2) 0.427221656899909 43 0.045498420986803 0.830328183612576 3184 0.309574051874269 2 1 1 -6.86672128742325 LTS-009 chr6 147556516 147560274 3759 * STXBP5 NA 0 NA 1.23 1 NA NA NA NA NA LTS-009 chr6 147560275 149901132 2340858 * c(UST-AS1, UST, GINM1, STXBP5, TAB2, SASH1, ZC3H12D, SUMO4, SAMD5, PPIL4) 0.426048827049719 26 0.104412171409571 0.94983764522475 929 0.323244988964657 3 2 1 -6.88733778970638 LTS-009 chr6 149901133 149901692 560 * GINM1 NA 0 NA 0.656 1 NA NA NA NA NA LTS-009 chr6 149901693 150386814 485122 * c(RAET1E-AS1, KATNA1, GINM1, RAET1E, RAET1L, NUP43, RAET1G, PCMT1, RPS18P9, RAET1K, ULBP3, ULBP2, ULBP1, LRP11, LATS1) 0.417300509229035 35 0.0909309923961641 0.773935213997551 728 0.308877200964815 2 1 1 -6.76964483076735 LTS-009 chr6 150386815 150387081 267 * ULBP3 NA 0 NA 1.731 1 NA NA NA NA NA LTS-009 chr6 150387082 151220170 833089 * c(MTHFD1L, IYD, PLEKHG1, ULBP3, PPP1R14C) 0.444879686555789 12 0.0439878598954509 1.00658185371659 527 0.312454400658661 4 2 2 -6.9736543436888 LTS-009 chr6 151220171 151226735 6565 * MTHFD1L NA 0 NA 0.866 1 NA NA NA NA NA LTS-009 chr6 151226736 160577102 9350367 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, RMND1, TULP4, ARID1B, TMEM181, ZBTB2, SLC22A1, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, LOC729603, EZR, VIP, ARMT1, ZDHHC14, CCDC170, MYCT1, RSPH3, NA NA NA NA NA NA NA NA NA LTS-009 FNDC1, SERAC1, SYNJ2, SYTL3, WTAP, AKAP12) 0.451461318515899 155 0.0395356319270686 0.885999961835545 6073 0.820713552612471 2 1 1 -6.8856551672383 LTS-009 NA NA NA NA LTS-009 chr6 160577103 160579518 2416 * SLC22A1 NA 0 NA 0.483 1 NA NA NA NA NA LTS-009 chr6 160579519 161174382 594864 * c(LPA, PLG, SLC22A1, SLC22A3, SLC22A2, LPAL2) 0.413288301510864 23 0.0548449124976736 0.723886282011979 459 0.292395548929857 2 1 1 -6.90017886929973 LTS-009 chr6 161174383 161412766 238384 * PLG NA 0 NA 0.786 1 NA NA NA NA NA LTS-009 chr6 161412767 167590641 6177875 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, MAP3K4, LINC00602, PARK2, MPC1, AGPAT4, RPS6KA2, T, AGPAT4-IT1, RNASET2, LINC00473, QKI) 0.426714331717041 42 0.0915767418702366 0.842848159270229 2143 0.28295633827853 2 1 1 -6.89254705046518 LTS-009 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.601 1 NA NA NA NA NA LTS-009 chr6 167591885 167787983 196099 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.351506462061201 15 0.0842974890887425 0.650707711310073 353 0.375889403604241 1 1 0 -6.95860432112829 LTS-009 chr6 167787984 167794761 6778 * TCP10 0.258046171586189 3 0.0413561764834871 0.35935149278496 90 0.29365644954955 5 4 1 -6.87180708424094 LTS-009 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 0.684 1 NA NA NA NA NA LTS-009 chr6 167796265 170070848 2274584 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.437986751493379 27 0.0973295280839121 0.972500216074164 1125 0.333629451749592 3 2 1 -6.92278097043378 LTS-009 chr6 170070849 170893500 822652 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.440636255148275 17 0.0503866666536951 0.840804830362486 679 0.274819873164017 2 1 1 -6.75325752781495 LTS-009 chr6 170893501 170893599 99 * PDCD2 NA 0 NA 0.453880206917474 3 0.249415316289918 1 NA NA -5.76445846304142 LTS-009 chr7 193047 195594 2548 * FAM20C 0.347 1 NA 0.53461596335343 19 0.149798343981665 1 1 0 -5.76467533192966 LTS-009 chr7 195595 4855069 4659475 * c(WI2-2373I1.2, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19, AP5Z1) 0.308351324428982 114 0.0589842954055305 0.63592066976778 4120 0.212475721057891 1 1 0 -7.42431743450229 LTS-009 chr7 4855070 5024771 169702 * c(RBAK-RBAKDN, MMD2, RNF216P1, RADIL, PAPOLB) 0.2849376564198 4 0.0665200471036113 0.450308068448016 233 0.197935293518627 1 1 0 -6.90546276796644 LTS-009 chr7 5024772 5026175 1404 * c(RBAK-RBAKDN, RNF216P1) NA 0 NA 0.751 1 NA NA NA NA NA LTS-009 chr7 5026176 5940014 913839 * c(RBAK-RBAKDN, RNF216-IT1, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216P1, CCZ1, RNF216, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.321480877801418 23 0.0706547022958963 0.615716010545182 1080 0.26426922400133 1 1 0 -6.83303436700236 LTS-009 chr7 5940015 5940447 433 * CCZ1 NA 0 NA 0.317 1 NA NA NA NA NA LTS-009 chr7 5940448 6022570 82123 * c(RSPH10B, CCZ1, PMS2) 0.276209050791833 4 0.0464219775537406 0.270673208441331 125 0.198253496247086 1 1 0 -7.51794554439893 LTS-009 chr7 6022571 6026483 3913 * PMS2 NA 0 NA 0.488 1 NA NA NA NA NA LTS-009 chr7 6026484 6786822 760339 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.301566536134854 34 0.0828329773643169 0.565917787160815 1301 0.246785802582271 1 1 0 -6.73332683792637 LTS-009 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.041 1 NA NA NA NA NA LTS-009 chr7 6790904 6844723 53820 * c(CCZ1B, PMS2CL, RSPH10B2) NA 0 NA 0.339595026825811 85 0.197942248884763 0 NA NA -5.76445901527515 LTS-009 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.562 1 NA NA NA NA NA LTS-009 chr7 6845571 17338345 10492775 * c(LOC100131257, ISPD-AS1, LRRC72, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, CCZ1B, THSD7A, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, UMAD1, ISPD, SCIN, PHF14) 0.305986947128265 75 0.0721590011117216 0.553012484512125 2745 0.230835485692426 1 1 0 -6.83121970576751 LTS-009 chr7 17338346 20689866 3351521 * c(MIR3146, MACC1-AS1, AHR, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, ABCB5, MACC1, ITGB8, TWIST1, HDAC9) 0.295564516944186 18 0.0904726152912972 0.618439097575844 1215 0.251285258665327 1 1 0 -6.94789281720586 LTS-009 chr7 20689867 20690997 1131 * ABCB5 NA 0 NA 0.352 1 NA NA NA NA NA LTS-009 chr7 20690998 21894066 1203069 * c(SP8, RPL23P8, ABCB5, SP4, DNAH11) 0.276374032476034 19 0.0931014977800513 0.475663657853141 701 0.258794214545002 1 1 0 -7.10131389366848 LTS-009 chr7 21894067 26778539 4884473 * c(LOC100506178, KLHL7-AS1, RNU6-16P, GPNMB, IGF2BP3, NUPL2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, FAM221A, IL6, MIR148A, LOC441204, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SNORD93, FAM126A, DNAH11, SKAP2, CCDC126, NFE2L3, RAPGEF5, KIAA0087) 0.321945930542366 59 0.089972091263414 0.554438521829919 2528 0.26035193897357 1 1 0 -6.79547241817829 LTS-009 chr7 26778540 26779482 943 * SKAP2 NA 0 NA 0.796 1 NA NA NA NA NA LTS-009 chr7 26779483 27236950 457468 * c(HOXA-AS3, HOTAIRM1, HOXA10-HOXA9, HOXA10-AS, HOXA11-AS, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, MIR196B, SKAP2) 0.298859867747902 3 0.0200748598998847 0.784780791026966 597 0.236690177337623 1 1 0 -7.20572802138943 LTS-009 chr7 27236951 31117736 3880786 * c(JAZF1-AS1, HOTTIP, MIR550B1, LOC100506497, INMT-FAM188B, MIR550A3, NOD1, HIBADH, INMT, CHN2, ADCYAP1R1, CRHR2, EVX1, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, GHRHR, HOXA13, AQP1, LOC401320, DPY19L2P3, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, CREB5, SCRN1, TRIL) 0.307451102998195 38 0.0528388677579861 0.609235369550213 2475 0.232917240997 1 1 0 -6.93645434155595 LTS-009 chr7 31117737 31120136 2400 * ADCYAP1R1 NA 0 NA 0.487 1 NA NA NA NA NA LTS-009 chr7 31120137 33392380 2272244 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, ADCYAP1R1, CCDC129, AVL9, LSM5, KBTBD2, BBS9, LINC00997, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, NEUROD6, MIR550A2) 0.307775286247531 32 0.0900677108642303 0.510319246981058 1398 0.265348558178912 1 1 0 -6.95808929090487 LTS-009 chr7 33392381 34009946 617566 * c(BMPER, BBS9) 0.312 1 NA 0.536621528540524 115 0.132517783444569 1 1 0 -5.83614956407658 LTS-009 chr7 34009947 34193881 183935 * BMPER NA 0 NA 0.614498297044825 82 0.158958494807179 1 NA NA -5.79009720919152 LTS-009 chr7 34193882 39606044 5412163 * c(MIR1200, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, BMPER, DPY19L1, KIAA0895, VPS41, AMPH, AOAH, FAM183BP, GPR141, NPSR1, LOC401324, NPSR1-AS1, TARP, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, HERPUD2, SFRP4, EEPD1, STARD3NL, ELMO1, SEPT7) 0.391866664186461 84 0.0620709750047304 0.945702169477038 2358 0.361436773130548 3 2 1 -6.8848634878011 LTS-009 chr7 39606045 39874090 268046 * c(LINC00265, YAE1D1, RALA, LOC646999) 0.356297163112802 2 0.0205060966544099 1.33316760448171 111 0.364985583057024 6 4 2 -6.93780295175612 LTS-009 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.456 1 NA NA NA NA NA LTS-009 chr7 39892331 39989741 97411 * character(0) 0.317000334782409 3 0.027 0.560335557023706 40 0.290348579186979 1 1 0 -6.94501713943958 LTS-009 chr7 39989742 45116115 5126374 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, YKT6, MPLKIP, AEBP1, TMED4, HECW1, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, BLVRA, MRPS24, MRPL32, SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, POLR2J4, CDK13, STK17A, H2AFV) 0.352526721812744 83 0.0631615037106023 1.22250451312329 3640 0.450748201062531 4 3 1 -6.91062182422506 LTS-009 chr7 45116116 45119972 3857 * character(0) NA 0 NA 0.869 1 NA NA NA NA NA LTS-009 chr7 45119973 53930236 8810264 * c(DDC-AS1, C7orf72, RAMP3, IKZF1, ADCY1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, NACAD, COBL, SUN3, POM121L12, GRB10, HUS1, IGFBP1, IGFBP3, VWC2, C7orf65, LINC01446, FIGNL1, SEPT7P2, TNS3, SNORA5B, SNORA5C, UPP1, C7orf69, LINC00525, TBRG4) 0.347409545971559 105 0.0779943021775384 1.08946785460177 3175 0.390039967848499 3 2 1 -7.02144129872746 LTS-009 chr7 53930237 53934389 4153 * character(0) NA 0 NA 0.603788527962516 71 0.232478860379044 1 NA NA -5.7645720628732 LTS-009 chr7 53934390 53934397 8 * character(0) NA 0 NA 0.833 1 NA NA NA NA NA LTS-009 chr7 53934398 57531922 3597525 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, VSTM2A, DKFZp434L192, SEC61G, SUMF2, GBAS, VSTM2A-OT1, HPVC1, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.322272980823357 40 0.0798022837215796 1.08194373093406 1470 0.476541949958695 4 3 1 -6.92530989029758 LTS-009 chr7 57531923 57533232 1310 * ZNF716 NA 0 NA 1.42001873772088 19 1.21921332608487 5 NA NA -5.76441093353894 LTS-009 chr7 62758725 63727308 968584 * c(LINC01005, ZNF679, ZNF727, ZNF733P, ZNF735) NA 0 NA 0.576617356206179 156 0.200619310264369 1 NA NA -5.76693503673315 LTS-009 chr7 63727309 64254791 527483 * c(LOC100128885, ZNF679, ZNF680, ZNF107, LOC641746, YWHAEP1, ZNF736, ZNF138) 0.454 1 NA 0.734309735180426 219 0.199486664432944 2 2 0 -5.8155027028023 LTS-009 chr7 64254792 64539088 284297 * c(ZNF273, ERV3-1, ZNF117, CCT6P3, ZNF138) 0.451365027731176 15 0.0535882005491436 0.699707434559837 240 0.3322951184507 2 1 1 -6.78988604704765 LTS-009 chr7 64539089 64639758 100670 * character(0) NA 0 NA 0.578 1 NA NA NA NA NA LTS-009 chr7 64639759 65154717 514959 * c(ZNF92, LOC441242, INTS4P2) 0.376534010807872 2 0.000707106781186548 0.484071019272006 100 0.212485239178365 19 12 7 -14.5104589946502 LTS-009 chr7 65154718 66483000 1328283 * c(VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, TMEM248, TYW1, CCT6P1, INTS4P2, SNORA22, GTF2IRD1P1, TPST1) 0.456428374238665 20 0.0430383855596251 0.805673804978981 788 0.572339714976059 2 1 1 -6.82929928479929 LTS-009 chr7 66483001 66786524 303524 * c(MIR4650-2, PMS2P4, TYW1, STAG3L4) 0.41834163868642 4 0.094662558596311 0.580766074207525 133 0.248075899846715 2 1 1 -7.04195947328101 LTS-009 chr7 69063868 71488825 2424958 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.454466520089873 11 0.0352319586326237 0.903829734352105 507 0.350301562618358 2 1 1 -7.03129377506372 LTS-009 chr7 71488826 72717578 1228753 * c(MIR4650-1, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, CALN1, FKBP6, POM121) 0.395082855784231 9 0.0891049630741433 0.656250571036352 369 0.43104515264468 2 1 1 -7.01998541375057 LTS-009 chr7 72717579 74210670 1493092 * c(MIR4284, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, NSUN5, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, GTF2IRD2, DNAJC30, FKBP6, BAZ1B, BCL7B, GTF2IRD1) 0.438897440267791 26 0.104027370658658 0.832443077657588 1858 0.28309045128271 2 1 1 -6.75552307966003 LTS-009 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.653 1 NA NA NA NA NA LTS-009 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.342977698326526 4 0.123132719724152 0.628838539752394 211 0.267069213319745 1 1 0 -6.87254280780373 LTS-009 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.048 1 NA NA NA NA NA LTS-009 chr7 75048588 81746479 6697892 * c(POM121C, PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR4651, MIR548AU, MAGI2-AS2, CCL26, SEMA3C, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, GNAI1, HGF, HIP1, HSPB1, GNAT3, RPL13AP17, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, CACNA2D1, UPK3B, TMEM120A, TMEM60, CD36, MAGI2) 0.460304723910803 38 0.0427695950948845 0.825235499348813 3011 0.314230490652387 2 1 1 -6.93021917191221 LTS-009 chr7 81746480 81765832 19353 * CACNA2D1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-009 chr7 81765833 89861955 8096123 * c(SEMA3A, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, SEMA3D, STEAP2, STEAP1, PCLO, GRM3, DPY19L2P4, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, CACNA2D1, TMEM243, STEAP4, SEMA3E, DMTF1) 0.422994162966822 44 0.0820913062275143 0.741994769794859 3095 0.29112648394494 2 1 1 -7.02506079624777 LTS-009 chr7 89861956 89862032 77 * STEAP2 NA 0 NA 0.897 1 NA NA NA NA NA LTS-009 chr7 89862033 91501533 1639501 * c(LOC101409256, STEAP2, CDK14, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.441982111179072 8 0.0172538815508693 0.948624163490374 699 0.89298929215837 2 1 1 -6.78771352646691 LTS-009 chr7 91501534 91501536 3 * MTERF1 NA 0 NA 0.569 1 NA NA NA NA NA LTS-009 chr7 91501537 93125295 1623759 * c(AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, CALCR, RBM48, NA, KRIT1) 0.414484825018197 16 0.116817521516823 0.736478168740954 2119 0.263075570249821 2 1 1 -6.84299399104762 LTS-009 chr7 93125296 93346164 220869 * c(GNGT1, CALCR) NA 0 NA 1.26 1 NA NA NA NA NA LTS-009 chr7 93346165 99056951 5710787 * c(MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, PDAP1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, PTCD1, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, SHFM1, TFPI2, TRRAP, MYH16, BUD31, SGCE, ATP5J2) 0.437980305638113 62 0.0712196088245442 0.825999275921555 3859 0.299719647195106 2 1 1 -6.78541138626182 LTS-009 chr7 99056952 99675095 618144 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, AZGP1P1, CYP3A43, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.429304810418608 35 0.0832429066804196 0.680506042211306 1367 0.219396436300068 2 1 1 -6.9245169195155 LTS-009 chr7 99675096 100321092 645997 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, MOSPD3, GIGYF1, TAF6, TFR2, ZNF3, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.445509005606231 53 0.0741183006845917 0.804299789535175 2232 0.239034624826816 2 1 1 -6.73829065013839 LTS-009 chr7 100321093 100321191 99 * EPO NA 0 NA 0.683 1 NA NA NA NA NA LTS-009 chr7 100321192 100344353 23162 * c(EPO, ZAN) NA 0 NA 0.424492907185143 38 0.139206969544788 0 NA NA -5.79751118787867 LTS-009 chr7 100344354 100344359 6 * ZAN 0.372 1 NA 1.313 1 NA NA NA NA NA LTS-009 chr7 100344360 100486656 142297 * c(EPHB4, UFSP1, SRRT, SLC12A9, TRIP6, ZAN) 0.462401957923165 32 0.0380769594204905 0.875487247968869 631 1.54026064249337 2 1 1 -6.95034599878114 LTS-009 chr7 100486657 100547299 60643 * c(UFSP1, ACHE) 0.216 1 NA 0.916956703999547 87 0.268750721948764 3 3 0 -5.77040293091927 LTS-009 chr7 100547300 100624879 77580 * MUC12 0.364578101701744 135 0.0701739826330589 0.858945215810324 327 0.462474276928671 3 2 1 -6.80153956538191 LTS-009 chr7 100624880 100633823 8944 * MUC12 NA 0 NA 0.473 1 NA NA NA NA NA LTS-009 chr7 100633824 100691291 57468 * c(MUC12, MUC17) 0.399589695536977 9 0.149807376320394 0.604775367767622 299 0.205567964125179 2 1 1 -6.83533227767593 LTS-009 chr7 100691292 100692680 1389 * MUC17 0.43 1 NA 0.620014434799543 11 0.318503774774263 1 1 0 -5.76447055503783 LTS-009 chr7 100692681 100701861 9181 * MUC17 0.482760799092593 2 0.0148492424049175 0.587599285363711 48 0.187491927722217 2 1 1 -9.76073024620906 LTS-009 chr7 100701862 102952788 2250927 * c(RPL19P12, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, FBXL13, NAPEPLD, CLDN15, POLR2J2, MOGAT3, DPY19L2P2, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.451515504517668 49 0.0386628766028976 0.839844536003464 2219 0.30525404170093 2 1 1 -6.83608505944409 LTS-009 chr7 102952789 103341362 388574 * c(DNAJC2, SLC26A5, RELN, PSMC2, PMPCB) 0.440750623748568 7 0.0544176967014014 0.67019439936381 697 0.226089384030737 2 1 1 -6.8653661765897 LTS-009 chr7 103341363 110764707 7423345 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, COG5, DUS4L, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LHFPL3, LAMB1, DNAJB9, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, PUS7, LRRN3, PRKAR2B, KMT2E, BCAP29, RELN, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, IMMP2L) 0.440662039466232 39 0.0802416138869993 0.775101616989231 3514 0.300480900529229 2 1 1 -6.76752803414406 LTS-009 chr7 110764708 113091231 2326524 * c(ZNF277, BMT2, LSMEM1, IFRD1, LINC00998, GPR85, LRRN3, TMEM168, IMMP2L, DOCK4) 0.383158393420436 24 0.0668147856369393 1.06591014445172 952 0.364888486846593 3 2 1 -6.75317658662527 LTS-009 chr7 113091232 113091241 10 * character(0) NA 0 NA 0.76 1 NA NA NA NA NA LTS-009 chr7 113091242 115897495 2806254 * c(MIR3666, TFEC, TES, MDFIC, PPP1R3A, FOXP2) 0.447914956927624 17 0.0369654051306162 0.683646919907617 703 0.305495108912175 2 1 1 -7.15730746545976 LTS-009 chr7 115897496 120988950 5091455 * c(FAM3C, CFTR, ASZ1, TSPAN12, TES, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.44640235282831 46 0.100932849442678 0.826657168227054 2017 0.316322356848722 2 1 1 -6.77986802289418 LTS-009 chr7 120988951 120990550 1600 * FAM3C NA 0 NA 0.42540732378349 39 0.150689459121792 0 NA NA -5.76640988145968 LTS-009 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.802 1 NA NA NA NA NA LTS-009 chr7 120990582 124387106 3396525 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, RNF133, HYAL4, HYALP1, GPR37, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, TMEM229A, WASL, CADPS2) 0.45117210137273 31 0.0346849724207467 0.763199494134121 1587 0.342928102676358 2 1 1 -6.83532290122308 LTS-009 chr7 124387107 128128221 3741115 * c(C7orf77, MGC27345, ZNF800, POT1, SND1, SND1-IT1, GPR37, GRM8, HILPDA, FSCN3, IMPDH1, ARF5, LEP, PRRT4, MIR129-1, PAX4, RBM28, METTL2B, LRRC4, MIR592, MIR593, GCC1) 0.382000808509694 23 0.0972528589660741 1.01968507073569 1275 0.56809432162619 3 2 1 -6.73482574468683 LTS-009 chr7 128128222 128388920 260699 * c(FAM71F2, LINC01000, METTL2B, CALU, FAM71F1) 0.389 1 NA 0.793243853780027 276 0.407640511804574 2 2 0 -5.76442035151252 LTS-009 chr7 128388921 128394314 5394 * CALU NA 0 NA 1.26 1 NA NA NA NA NA LTS-009 chr7 128394315 130027633 1633319 * c(LOC100130705, SMKR1, RNA5SP244, CPA1, CPA2, SSMEM1, KLHDC10, FLNC, AHCYL2, TNPO3, TPI1P2, TSPAN33, IRF5, KCP, MIR182, MIR183, MIR96, LOC407835, NRF1, CPA4, ZC3HC1, STRIP2, OPN1SW, CCDC136, SMO, UBE2H, CALU, TMEM209, ATP6V1F, CPA5) 0.354412344812394 38 0.0792966637503405 1.11284119840364 2374 0.400254373657553 3 2 1 -6.87744486053817 LTS-009 chr7 130027634 130562320 534687 * c(TSGA13, CPA1, KLF14, COPG2, MESTIT1, MIR29A, MIR29B1, MEST, MIR335, NA, CEP41) NA 0 NA 1.10637186180484 483 0.379513699457715 3 NA NA -5.77815938603955 LTS-009 chr7 130562321 130827557 265237 * c(LINC-PINT, MKLN1, NA) NA 0 NA 0.735 1 NA NA NA NA NA LTS-009 chr7 130827558 131113954 286397 * MKLN1 0.478 1 NA 0.763520954390211 49 0.237699626093307 2 2 0 -5.76963959770489 LTS-009 chr7 131113955 141420768 10306814 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, FLJ40288, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, MKLN1, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, LUC7L2, MRPS33, PODXL, CHCHD3, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, MIR490, PTN, KIAA1549, EXOC4, NA NA NA NA NA NA NA NA NA LTS-009 C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, ADCK2, PLXNA4, DGKI, ZC3HAV1L) 0.4511426004434 141 0.0516757631630172 0.793800516513013 6761 0.316221205368075 2 1 1 -6.76594500614177 LTS-009 NA NA NA NA LTS-009 chr7 141420769 141420790 22 * c(WEE2-AS1, WEE2) NA 0 NA 0.529 1 NA NA NA NA NA LTS-009 chr7 141420791 141765655 344865 * c(OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, MGAM) 0.448276607304653 22 0.0519699380303119 0.599046794756816 560 0.19404058276729 2 1 1 -7.16539192171439 LTS-009 chr7 141765656 141794410 28755 * MGAM NA 0 NA 0.306076521315935 93 0.0695114807499756 0 NA NA -5.80856922691169 LTS-009 chr7 141794411 141794586 176 * MGAM NA 0 NA 0.609 1 NA NA NA NA NA LTS-009 chr7 141794587 141957504 162918 * c(MOXD2P, PRSS58, MGAM, MGAM2) 0.458660506046525 8 0.0282131554927332 0.647336834833811 370 0.219472688283453 2 1 1 -7.09421598549199 LTS-009 chr7 141957505 142008477 50973 * c(PRSS58, NA) 0.217 1 NA 0.792740557395258 19 0.401769972883877 2 2 0 -5.76441305971817 LTS-009 chr7 142008478 142028476 19999 * character(0) 0.217489422655312 6 0.011933147112141 0.785433946194575 45 0.61419873235646 2 2 0 -6.75858865868831 LTS-009 chr7 142028477 142028500 24 * character(0) 0.208 1 NA 1.967 1 NA NA NA NA NA LTS-009 chr7 142028501 142139315 110815 * character(0) 0.258972722475158 20 0.0958449817482156 0.996449592584643 109 0.729485197646105 5 4 1 -6.75957620717395 LTS-009 chr7 142139316 142143953 4638 * character(0) 0.389 1 NA 0.821454502516583 9 0.355690877026668 2 2 0 -5.76443216522574 LTS-009 chr7 142143954 142498837 354884 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.355113049395233 52 0.0929945991717429 0.994477884340527 342 1.10006887491513 6 4 2 -6.79184782278223 LTS-009 chr7 142498838 142498897 60 * character(0) 0.43 1 NA 0.99278460794284 3 0.156927796560499 3 3 0 -5.76441140009872 LTS-009 chr7 142498898 142565401 66504 * EPHB6 0.46200865893561 3 0.021548395145192 0.768134800146105 94 0.244794009697359 2 1 1 -7.34606624938709 LTS-009 chr7 142565402 142960545 395144 * c(OR9A2, C7orf34, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.442690271628854 36 0.0383826597753279 0.636205909681965 574 0.206176793475923 2 1 1 -7.00565655969963 LTS-009 chr7 142960546 143295592 335047 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.443461813404164 3 0.0263881286440197 0.783229319961543 702 0.281003782520796 2 1 1 -6.75015617105285 LTS-009 chr7 143295593 143295603 11 * character(0) NA 0 NA 0.089 1 NA NA NA NA NA LTS-009 chr7 143295604 143307635 12032 * character(0) NA 0 NA 0.138265666244229 61 0.0741343743784277 0 NA NA -6.68597413581553 LTS-009 chr7 143307636 143318078 10443 * TCAF2 NA 0 NA 0.634 1 NA NA NA NA NA LTS-009 chr7 143318079 143533765 215687 * c(LOC154761, TCAF2, CTAGE6) 0.422216043218158 4 0.12491330326804 0.779363190556767 47 0.576269902042437 2 1 1 -6.74412079216005 LTS-009 chr7 143533766 143548494 14729 * c(LOC154761, TCAF1) NA 0 NA 0.335 1 NA NA NA NA NA LTS-009 chr7 143548495 143554418 5924 * TCAF1 NA 0 NA 0.286267706408313 53 0.127949951663235 0 NA NA -5.77132086174659 LTS-009 chr7 143554419 143556118 1700 * TCAF1 NA 0 NA 0.837 1 NA NA NA NA NA LTS-009 chr7 143556119 143884193 328075 * c(OR2A14, OR6B1, OR2F2, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.466453515771876 4 0.0400364417333342 0.555018248110783 197 0.177448975249079 2 1 1 -7.71979812578206 LTS-009 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.087 1 NA NA NA NA NA LTS-009 chr7 143928927 144074278 145352 * c(OR2A7, ARHGEF34P, ARHGEF5) 0.385 1 NA 0.338915481207785 157 0.221496363918544 0 0 0 -5.76457753596426 LTS-009 chr7 144074279 148312787 4238509 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, CNTNAP2, TPK1, ARHGEF5) 0.444735760135425 14 0.0561673324163542 0.673286936237344 557 0.259169817651505 2 1 1 -7.64616439265489 LTS-009 chr7 148312788 149577802 1265015 * c(ZNF783, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.449623545524849 61 0.0665939001784969 0.778325269834577 2210 0.335990733719305 2 1 1 -6.75135928208414 LTS-009 chr7 149577803 149588252 10450 * character(0) NA 0 NA 0.091 1 NA NA NA NA NA LTS-009 chr7 149588253 149986715 398463 * ACTR3C 0.0975608148091254 2 0.0106066017177982 0.470169249703621 143 0.265566675646673 6 6 0 -9.94357802540944 LTS-009 chr7 149986716 149990032 3317 * ACTR3C NA 0 NA 1.472 1 NA NA NA NA NA LTS-009 chr7 149990033 150095268 105236 * c(RNU6-34P, ZBED6CL, ZNF775, REPIN1, RARRES2, ACTR3C, LRRC61) 0.46840138948075 4 0.0157982066492793 0.792130587996768 284 0.241882656811217 2 1 1 -8.30509831801038 LTS-009 chr7 150095269 150647143 551875 * c(GIMAP1-GIMAP5, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, KCNH2, GIMAP6, GIMAP4, GIMAP5, TMEM176A, LOC728743) 0.465122096932649 25 0.031430717459199 0.623111807325758 643 0.213713790693516 2 1 1 -7.52434409849786 LTS-009 chr7 150647144 152132933 1485790 * c(WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.419957814139088 51 0.0681501514103593 0.842629678688526 2480 0.27951208476587 2 1 1 -6.81689260551729 LTS-009 chr7 152132934 152142260 9327 * c(FABP5P3, KMT2C) NA 0 NA 0.429 1 NA NA NA NA NA LTS-009 chr7 152142261 155436327 3294067 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, HTR5A, INSIG1, ACTR3B, XRCC2) 0.418771297408134 41 0.100069366185564 0.62429562459756 1130 0.248620687742518 1 1 0 -7.73300767951203 LTS-009 chr7 155436328 155437105 778 * character(0) NA 0 NA 0.998 1 NA NA NA NA NA LTS-009 chr7 155437106 158937585 3500480 * c(DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, LOC285889, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.452152884249984 80 0.0360442677898488 0.729694167381025 2321 0.527389212754122 2 1 1 -6.8672578319858 LTS-009 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.578 2 0 0 NA NA -Inf LTS-009 chr8 182757 182934 178 * ZNF596 0.42 1 NA 0.580002085559294 3 0.275920882379956 1 1 0 -5.76441064243339 LTS-009 chr8 182935 2040306 1857372 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.445374976697944 63 0.0397312399576382 0.734624900014902 1223 0.234030144508939 2 1 1 -6.87571759295185 LTS-009 chr8 2040307 2040316 10 * MYOM2 NA 0 NA 0.721 1 NA NA NA NA NA LTS-009 chr8 2040317 6264133 4223817 * c(LOC100287015, CSMD1, MCPH1, MYOM2) 0.442117538508571 25 0.0438684776728499 0.593835090605726 630 0.219156953299281 2 1 1 -9.49450178420654 LTS-009 chr8 6264134 6264137 4 * MCPH1 NA 0 NA 0.76 1 NA NA NA NA NA LTS-009 chr8 6264138 6693148 429011 * c(MIR4659A, MIR4659B, GS1-24F4.2, ANGPT2, XKR5, AGPAT5, MCPH1) 0.438287545562326 26 0.0971902179313251 0.858124871905613 453 0.379784165591869 2 1 1 -6.74317838635324 LTS-009 chr8 6693149 6728046 34898 * c(GS1-24F4.2, XKR5) NA 0 NA 0.581 1 NA NA NA NA NA LTS-009 chr8 6728047 7272482 544436 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.413605840250087 7 0.0877661937303012 0.558075572971911 69 0.274287102774644 2 1 1 -7.28562348433186 LTS-009 chr8 7272483 7686572 414090 * c(DEFB4B, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B) 0.30035588062149 3 0.157 0.188031657974526 79 0.215640026206418 0 0 0 -8.65002844206161 LTS-009 chr8 7686573 7752284 65712 * c(DEFB4A, SPAG11A) 0.414551810980669 2 0.0862670273047588 0.3228637149434 44 0.228502645003913 0 0 0 -6.78371858695906 LTS-009 chr8 7752285 7752350 66 * DEFB4A NA 0 NA 0.199 1 NA NA NA NA NA LTS-009 chr8 7752351 9953689 2201339 * c(FAM66E, ZNF705B, MIR548I3, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, DEFB4A, FAM86B3P, USP17L8, MIR124-1, MSRA, USP17L3, MIR597, PPP1R3B, TNKS, ERI1, MFHAS1) 0.457462882910231 26 0.0377425285525289 0.854447062521349 924 1.23828079096697 2 1 1 -6.87638868705004 LTS-009 chr8 9953690 10065317 111628 * MSRA NA 0 NA 0.542 1 NA NA NA NA NA LTS-009 chr8 10065318 11282026 1216709 * c(MIR1322, TDH, PRSS55, C8orf74, XKR6, MSRA, PINX1, MTMR9, MIR598, SOX7, FAM167A, SLC35G5, FAM167A-AS1, RP1L1) 0.440405984403937 47 0.0364698245623388 0.659154140461576 1150 0.335978923996899 2 1 1 -6.95516307470996 LTS-009 chr8 11282027 16859688 5577662 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM167A, LINC00208, FAM167A-AS1, FAM86B1, LONRF1) 0.45372195263147 94 0.048025017550065 0.770308129966057 1527 0.296564614675392 2 1 1 -6.82851924784671 LTS-009 chr8 16859689 16884750 25062 * MICU3 NA 0 NA 1.345 1 NA NA NA NA NA LTS-009 chr8 16884751 17142206 257456 * c(VPS37A, MICU3, CNOT7, ZDHHC2) 0.440459048378194 6 0.0384538684659944 0.971030086306173 298 0.37894946121657 2 1 1 -6.7760682283584 LTS-009 chr8 17142207 24212598 7070392 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, ADAM28, LZTS1, VPS37A, NKX2-6, PEBP4, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, GFRA2, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, ASAH1, NKX3-1, PCM1, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, NA NA NA NA NA NA NA NA NA LTS-009 POLR3D, STC1, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, CHMP7, ENTPD4, PHYHIP) 0.452836506883457 130 0.067770766587197 0.831190166565498 5920 0.885972064214506 2 1 1 -6.76781714794103 LTS-009 NA NA NA NA LTS-009 chr8 24212599 27101394 2888796 * c(PNMA2, ADAM28, ADRA1A, CDCA2, DPYSL2, ADAMDEC1, GNRH1, NEFM, NEFL, KCTD9, PPP2R2A, EBF2, BNIP3L, DOCK5, STMN4, ADAM7) 0.466083070677696 19 0.0267316095169823 0.669045298933635 1858 0.288766936165298 2 1 1 -7.85881488272951 LTS-009 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 0.858 1 NA NA NA NA NA LTS-009 chr8 27142392 30536880 3394489 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, SCARA3, SARAF, PNOC, ELP3, CCDC25, INTS9, PBK, ZNF395, LINC00589, MBOAT4, HMBOX1, FZD3) 0.450887327809991 84 0.0514155934810836 0.804402090192676 3087 0.297030052363861 2 1 1 -6.7671182918219 LTS-009 chr8 30536881 30536964 84 * GSR NA 0 NA 0.665 1 NA NA NA NA NA LTS-009 chr8 30536965 35093287 4556323 * c(NRG1-IT3, UNC5D, GSR, PURG, NRG1, PPP2CB, TEX15, WRN, DUSP26, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.447711276494543 39 0.0479428359566698 0.711488309802706 1239 0.281470528234229 2 1 1 -7.15718141999937 LTS-009 chr8 35093288 37457228 2363941 * c(UNC5D, KCNU1) 0.464687624002731 10 0.0350112680274349 0.616311000404158 496 0.185306807668778 2 1 1 -8.96350118496001 LTS-009 chr8 37457229 43152431 5695203 * c(LOC100130964, MIR4469, AP3M2, ERLIN2, PROSC, CHRNB3, SMIM19, GOT1L1, GPAT4, LETM2, HGSNAT, ADRB3, NKX6-3, ADAM3A, IDO2, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, FNTA, ADAM2, ADAM5, ADGRA2, DKK4, LSM1, ANK1, RNF5P1, POTEA, IKBKB, IDO1, C8orf86, GOLGA7, PLAT, POLB, WHSC1L1, THAP1, BRF2, C8orf4, PLEKHA2, MIR486-1, SFRP1, SLC20A2, STAR, TACC1, LOC728024, VDAC3, ZMAT4, KAT6A, ZNF703, RAB11FIP1, RNF170, NA NA NA NA NA NA NA NA NA LTS-009 TM2D2, POMK, GINS4, HOOK3, PLPP5, ADAM18, ADAM9, CHRNA6, ASH2L, BAG4) 0.428868236501872 88 0.0941456877806451 0.792156213275833 5688 0.31526079281957 2 1 1 -6.7408335715182 LTS-009 NA NA NA NA LTS-009 chr8 43152432 43212050 59619 * POTEA NA 0 NA 0.827459221982497 29 0.452441730728316 2 NA NA -5.76467501893768 LTS-009 chr8 47752736 47759712 6977 * LINC00293 0.48 1 NA 0.817945172093538 23 0.256430182964443 2 2 0 -5.76445781824354 LTS-009 chr8 47759713 48885567 1125855 * c(LOC100287846, CEBPD, SPIDR, MCM4, LINC00293, PRKDC) 0.381483248805734 5 0.205554615613467 1.16565416071179 781 0.446391965968546 3 2 1 -6.79099084444403 LTS-009 chr8 48885568 48886346 779 * MCM4 NA 0 NA 0.715 1 NA NA NA NA NA LTS-009 chr8 48886347 54147735 5261389 * c(PCMTD1, PXDNL, NPBWR1, FAM150A, MCM4, C8orf22, OPRK1, SNTG1, SNAI2, UBE2V2, EFCAB1, ST18, RB1CC1) 0.365343114518924 24 0.0813391539851165 0.985370468962514 1321 0.404179765936218 3 2 1 -6.80274778645972 LTS-009 chr8 54147736 54155399 7664 * OPRK1 NA 0 NA 2.771 1 NA NA NA NA NA LTS-009 chr8 54155400 56015249 1859850 * c(LYPLA1, XKR4, MRPL15, OPRK1, ATP6V1H, RP1, SOX17, TCEA1, RGS20) 0.436541213479497 5 0.0381510157138706 1.31806698102931 727 0.436595318117276 4 2 2 -6.75235251147426 LTS-009 chr8 56015250 56854639 839390 * c(SBF1P1, XKR4, TMEM68, LYN, TGS1) 0.436366343436897 5 0.060520244546763 1.07912462555931 358 0.316330533264078 4 2 2 -6.84049593844326 LTS-009 chr8 56854640 56858868 4229 * LYN NA 0 NA 1.844 1 NA NA NA NA NA LTS-009 chr8 56858869 59360667 2501799 * c(LINC00968, LINC01606, UBXN2B, SDR16C5, LINC00588, SNORD54, LOC286177, LYN, MOS, PENK, PLAG1, IMPAD1, RPS20, CHCHD7, FAM110B) 0.379600691598454 11 0.0521752292324101 1.44829411437794 786 0.424472567020527 6 4 2 -6.98439235292888 LTS-009 chr8 59360668 59360977 310 * UBXN2B 0 1 NA 1.41536062115911 4 2.73779441339192 5 5 0 -5.7644101786381 LTS-009 chr8 59360978 59536388 175411 * c(UBXN2B, CYP7A1, SDCBP, NSMAF) 0.377870512498369 8 0.0402598701296607 1.39301855784855 344 0.482320990630282 6 4 2 -6.80238119688806 LTS-009 chr8 59536389 59544003 7615 * NSMAF NA 0 NA 1.829 1 NA NA NA NA NA LTS-009 chr8 59544004 67831513 8287510 * c(MIR124-2HG, LOC100130298, LINC00967, RRS1-AS1, C8orf44-SGK3, MIR4470, YTHDF3-AS1, ADHFE1, CRH, MCMDC2, CLVS1, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, ASPH, MYBL1, PDE7A, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, UG0898H09, TTPA, CA8, VCPIP1, NSMAF, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1, TOX) 0.317875379513817 43 0.108439995196143 1.6873734846648 2824 0.715275763381384 6 4 2 -6.85009318731944 LTS-009 chr8 67831514 67831545 32 * MCMDC2 NA 0 NA 3.066 1 NA NA NA NA NA LTS-009 chr8 67831546 71646980 3815435 * c(TCF24, LINC01592, NCOA2, ARFGEF1, COPS5, C8orf34, MCMDC2, SULF1, TRAM1, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, SNHG6, SNORD87, CSPP1, PREX2, SLCO5A1) 0.319926387364014 59 0.0446171780533024 1.89250982798491 2167 0.741583427632959 7 5 2 -6.73869159285799 LTS-009 chr8 71646981 71647077 97 * XKR9 NA 0 NA 1.381 1 NA NA NA NA NA LTS-009 chr8 71647078 73993200 2346123 * c(MSC-AS1, SBSPON, EYA1, XKR9, LOC392232, TERF1, TRPA1, MSC, KCNB2) 0.314673059278896 26 0.0993331689897109 1.63092807035972 674 0.674895248834903 7 5 2 -6.82420912657195 LTS-009 chr8 73993201 74005131 11931 * SBSPON 0.292 1 NA 2.5762333189549 7 0.636069403221288 10 10 0 -5.76441321032686 LTS-009 chr8 74005132 92968803 18963672 * c(C8orf88, STAU2-AS1, C8orf89, LRRC69, ZFHX4-AS1, REXO1L2P, MIR2052, MIR4661, MIR5708, MIR5681A, MIR5681B, LINC00534, LOC101241902, WWP1, STMN2, SLC26A7, DCAF4L2, RALYL, RDH10, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, LY96, ATP6V0D2, REXO1L1P, STAU2, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, C8orf59, MMP16, MIR2052HG, NBN, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, CNGB3, TMEM70, NA NA NA NA NA NA NA NA NA LTS-009 UBE2W, TMEM55A, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, SNX16, NECAB1, FABP9, FABP12, ZBTB10, TCEB1, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, ZFHX4, CRISPLD1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, CHMP4C) 0.355405990498462 77 0.0939844066559098 1.60912738189789 6183 0.686253817924268 6 4 2 -6.81764958267262 LTS-009 NA NA NA NA LTS-009 chr8 92968804 92968807 4 * RUNX1T1 NA 0 NA 1.801 1 NA NA NA NA NA LTS-009 chr8 92968808 103137744 10168937 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, OSR2, COX6C, FAM92A1, NDUFAF6, ANKRD46, C8orf37, VPS13B, SNX31, ERICH5, RAD54B, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, TRIQK, DPY19L4, FBXO43, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, FLJ42969, MTERF3, ZNF706, POLR2K, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, RPL30, NA NA NA NA NA NA NA NA NA LTS-009 LINC01298, SDC2, LINC00535, SPAG1, STK3, MIR599, UQCRB, YWHAZ, PLEKHF2, NIPAL2, GRHL2, NACAP1, NCALD, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.330945112464941 81 0.0391233961135379 1.86817889157019 5328 0.740079182524449 7 5 2 -6.7658772059184 LTS-009 NA NA NA NA LTS-009 chr8 103137745 103216676 78932 * character(0) NA 0 NA 1.404 1 NA NA NA NA NA LTS-009 chr8 103216677 114628158 11411482 * c(MIR2053, MIR3151, BAALC-AS1, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, ODF1, RRM2B, UBR5, AZIN1, ATP6V1C1, OXR1, SYBU, ENY2, KLF10, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.357575428780422 53 0.0471447297613111 1.64811942712565 4016 1.40165873638693 6 4 2 -6.75619216204712 LTS-009 chr8 114628159 114628203 45 * character(0) NA 0 NA 2.481 1 NA NA NA NA NA LTS-009 chr8 114628204 119936465 5308262 * c(MIR3610, LINC00536, SLC30A8, EXT1, SAMD12, AARD, TNFRSF11B, SAMD12-AS1, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H, MED30) 0.299007836306885 17 0.0894518437649061 1.95922859637184 1075 4.52506721753538 8 6 2 -6.74101241583014 LTS-009 chr8 119936466 133062155 13125690 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, TRIB1, COLEC10, RNF139, ZHX1, ADCY8, MAL2, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, FER1L6-AS1, MYC, NDUFB9, NOV, TNFRSF11B, ASAP1, FAM49B, ENPP2, POU5F1B, TRMT12, WDYHV1, GSDMC, PVT1, HAS2-AS1, DEPTOR, NA NA NA NA NA NA NA NA NA LTS-009 FER1L6, SNTB1, SQLE, TAF2, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.345594442825922 122 0.0652753430516721 1.67993270172017 4776 0.627054903427756 6 4 2 -6.79524993811862 LTS-009 NA NA NA NA LTS-009 chr8 133062156 133067174 5019 * OC90 NA 0 NA 1.388 1 NA NA NA NA NA LTS-009 chr8 133067175 133806982 739808 * c(HHLA1, TMEM71, LRRC6, KCNQ3, PHF20L1, OC90, HPYR1) 0.355583154319921 14 0.114069599922037 1.35533491057913 450 0.505957722670011 4 3 1 -6.80760363014569 LTS-009 chr8 133806983 133976911 169929 * c(PHF20L1, TG) 0.350605629673476 23 0.0445406950752518 1.80541828581315 469 0.720272981227772 9 6 3 -6.75958048477579 LTS-009 chr8 133976912 133984058 7147 * TG 0.376 1 NA 1.5721651954364 27 0.316746602596477 5 5 0 -5.76457920511283 LTS-009 chr8 133984059 136659842 2675784 * c(NDRG1, KHDRBS3, LINC01591, MIR30B, MIR30D, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1) 0.394178828999521 15 0.0505564276917622 1.74620775371645 816 0.571252713649448 6 4 2 -6.91608990360672 LTS-009 chr8 137877286 140743305 2866020 * c(COL22A1, FAM135B, KCNK9, TRAPPC9) 0.394677315270558 4 0.0560416511771974 1.21241354275804 603 0.348792684262425 4 2 2 -7.10070727365915 LTS-009 chr8 140743306 140743316 11 * TRAPPC9 NA 0 NA 1.507 1 NA NA NA NA NA LTS-009 chr8 140743317 142487589 1744273 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.414067202205592 37 0.0566875425245924 1.880743978437 1332 0.590098353725949 7 4 3 -6.77097418013359 LTS-009 chr8 142487590 142487799 210 * MROH5 NA 0 NA 1.111 1 NA NA NA NA NA LTS-009 chr8 142487800 143740473 1252674 * c(MIR4472-1, TSNARE1, ARC, MROH5, ADGRB1, LINC00051, JRK) 0.41307793058613 17 0.037060661719117 1.39439459648506 438 0.460927670922242 5 3 2 -6.7487667154896 LTS-009 chr8 143740474 143745759 5286 * JRK NA 0 NA 2.146 1 NA NA NA NA NA LTS-009 chr8 143745760 143857577 111818 * c(LOC100288181, LYPD2, THEM6, LY6K, SLURP1, LYNX1, PSCA, JRK) 0.381671080204082 22 0.0320216377061711 1.69636534309652 386 0.467463832902251 11 7 4 -6.81804721516346 LTS-009 chr8 143857578 144298793 441216 * c(CDC42P3, LOC100133669, CYP11B1, CYP11B2, GML, C8orf31, GPIHBP1, LY6E, LY6H, LYNX1, LY6D) 0.371873547385936 15 0.045652100561905 1.277608507769 409 0.482297061963096 6 4 2 -6.83533350940434 LTS-009 chr8 144298794 146171437 1872644 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, MIR661, TSTA3, MROH1, ZNF7, NA NA NA NA NA NA NA NA NA LTS-009 ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.363068296466618 165 0.0596442694361377 1.65611705091817 5720 0.483493647266467 6 4 2 -6.73831268810777 LTS-009 NA NA NA NA LTS-009 chr8 146171438 146280905 109468 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 1.52943765142681 255 0.385937069460899 5 NA NA -5.76496098027808 LTS-009 chr9 14732 116211 101480 * c(WASH1, FAM138C) 0.229 1 NA 0.817193157445323 3 0.382767553483834 2 2 0 -5.76470086943079 LTS-009 chr9 116212 14082032 13965821 * c(LINC00583, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, LURAP1L, CD274, INSL4, JAK2, VLDLR-AS1, LINC01235, PLPP6, MIR101-2, NFIB, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, TYRP1, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, PUM3) 0.439956030903093 96 0.0734372442138136 0.804030807599628 4713 0.323956952997177 2 1 1 -6.74143012127406 LTS-009 chr9 14082033 14082038 6 * NFIB NA 0 NA 1.117 1 NA NA NA NA NA LTS-009 chr9 14082039 14314622 232584 * NFIB 0.449295603915919 2 0.0261629509039023 1.09328924150908 219 0.420192780732566 4 2 2 -6.83714822728351 LTS-009 chr9 14314623 14398421 83799 * NFIB NA 0 NA 0.941 1 NA NA NA NA NA LTS-009 chr9 14398422 18910598 4512177 * c(C9orf92, MIR3152, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, NFIB, BNC2, CNTLN, SH3GL2, SNAPC3, ADAMTSL1, CER1) 0.439649175258121 57 0.0717004568589661 0.839040199952588 1821 0.296035836360895 2 1 1 -6.81808258552779 LTS-009 chr9 18910599 18910697 99 * ADAMTSL1 NA 0 NA 0.772 1 NA NA NA NA NA LTS-009 chr9 18910698 21351324 2440627 * c(MIR4473, MIR4474, RRAGA, PLIN2, SAXO1, SLC24A2, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, MLLT3, HAUS6, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SCARNA8, ADAMTSL1) 0.453073552678836 26 0.0516717003337863 0.732323102026405 1569 0.320630334813332 2 1 1 -6.87372039227076 LTS-009 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.531 1 NA NA NA NA NA LTS-009 chr9 21367330 21441126 73797 * c(IFNA1, IFNA2, IFNA8, IFNA13) NA 0 NA 0.447914557909814 78 0.238593623307324 1 NA NA -5.80864122786083 LTS-009 chr9 21441127 34723744 13282618 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, ELAVL2, C9orf72, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, IFNE, IFNA1, KIF24, IL11RA, AQP3, AQP7, ENHO, LINC01242, TMEM215, MIR31, CNTFR-AS1, LINC01239, SUGT1P1, NA NA NA NA NA NA NA NA NA LTS-009 ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, UBAP1, CHMP5, EQTN, APTX, UBE2R2, SMU1, MIR31HG, UBAP2, PRSS3, IFNK, BAG1, KIAA1161, CCL19, CCL21, DMRTA1, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, C9orf24, PLAA) 0.425912634272326 80 0.0623663685334543 0.803048376725115 4907 0.296045985220843 2 1 1 -6.76700905595726 LTS-009 NA NA NA NA LTS-009 chr9 34723745 34723812 68 * FAM205A NA 0 NA 0.568 1 NA NA NA NA NA LTS-009 chr9 34723813 34833377 109565 * c(FAM205A, FAM205BP) 0.4110289955788 13 0.0787855739756122 0.556778834464114 157 0.259105383871128 2 1 1 -6.93060133611208 LTS-009 chr9 34833378 34835727 2350 * FAM205BP 0.315629405234887 2 0.0254558441227157 0.397176052458053 65 0.232582007869516 4 3 1 -6.77408657092203 LTS-009 chr9 34835728 38414187 3578460 * c(GNE, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, DNAJB5, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, FAM214B, ZCCHC7, RECK, HINT2, PIGO, NA NA NA NA NA NA NA NA NA LTS-009 ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.458149665720819 86 0.0375411201819334 0.805069372824178 4706 0.346979006008001 2 1 1 -6.88629577499524 LTS-009 NA NA NA NA LTS-009 chr9 38414188 38423908 9721 * IGFBPL1 NA 0 NA 0.65 1 NA NA NA NA NA LTS-009 chr9 38423909 43861081 5437173 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.435063688266172 5 0.0619774152413603 0.525293077876366 352 0.243080003454651 1 1 0 -9.05574433030094 LTS-009 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.616413422087773 8 0.189177732002776 1 NA NA -5.79795028781004 LTS-009 chr9 65602571 66457127 854557 * LOC286297 0.433 1 NA 1.08693340021424 3 0.223911440827246 3 3 0 -5.80214057447283 LTS-009 chr9 66457128 71668106 5210979 * c(FRG1HP, FAM27B, LOC100133920, FAM122A, TMEM252, FXN, LOC286297, FOXD4L3, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5, PRKACG, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.303100604207996 26 0.119467337023073 0.813760472666616 406 0.403481390284038 2 2 0 -7.05211158309594 LTS-009 chr9 71668107 71990645 322539 * c(BANCR, FXN, FAM189A2, TJP2) 0.471 1 NA 0.743866917679845 221 0.249668342408788 2 2 0 -5.77854852552049 LTS-009 chr9 71990646 79465583 7474938 * c(MAMDC2-AS1, SMC5-AS1, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, ALDH1A1, SMC5, TMEM2, MAMDC2, GCNT1, OSTF1, ANXA1, APBA1, PTAR1, MIR204, C9orf135-AS1, PCA3, ABHD17B, PCSK5, NMRK1, C9orf40, RFK, RORB, RPSAP9, KLF9, ZFAND5, TRPM3, FAM189A2, GDA) 0.447097523605831 85 0.0454168276665612 0.81262562325291 3565 0.307915154703916 2 1 1 -6.77213985496963 LTS-009 chr9 79465584 79469003 3420 * PRUNE2 NA 0 NA 1.102 1 NA NA NA NA NA LTS-009 chr9 79469004 97061895 17592892 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, VPS13A-AS1, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, CTSL, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, SUSD3, FAM120A, VPS13A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, NA NA NA NA NA NA NA NA NA LTS-009 PSAT1, UBQLN1, HNRNPK, IARS, LINC01501, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR7-1, IDNK, LOC440173, SPATA31C1, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, TLE1, TLE4, SECISBP2, ZCCHC6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 RMI1, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, FGD3, GNA14) 0.446442730770224 142 0.0628723359380822 0.863854664755647 8201 0.334130652822817 2 1 1 -7.317581353538 LTS-009 NA NA NA NA LTS-009 chr9 97061896 97200853 138958 * c(LOC100132077, ZNF169, NUTM2F, MFSD14B) NA 0 NA 0.562325233035325 127 0.294339140166273 1 NA NA -5.76454577195384 LTS-009 chr9 97200854 97203194 2341 * MFSD14B NA 0 NA 1.058 1 NA NA NA NA NA LTS-009 chr9 97203195 99579944 2376750 * c(LINC00476, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441455, PTCH1, MFSD14B, C9orf3, CDC14B, FBP2) 0.447136453479085 22 0.0512126540098825 0.881112528714763 1702 1.35620182615721 2 1 1 -6.75584794607203 LTS-009 chr9 99579945 99961959 382015 * c(LOC100132781, CTSV, ZNF782, GAS2L1P2, LOC441454, NUTM2G, MFSD14C) 0.462821730351075 2 0.0148492424049175 0.656769856466496 283 0.315337731084095 2 1 1 -8.05547080797785 LTS-009 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 0.806 1 NA NA NA NA NA LTS-009 chr9 100041691 108523120 8481430 * c(CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, GRIN3A, COL15A1, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, TSTD2, ABCA1, ANKS6, FKTN, ALDOB, FOXE1, ERP44, TDRD7, SLC44A1, NIPSNAP3A, INVS, LOC286359, OR13C9, OR13D1, NA, MURC, OR13C2, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, TMEM38B, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TAL2, TGFBR1, NA NA NA NA NA NA NA NA NA LTS-009 TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, FSD1L, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.445299297535494 108 0.0753904386617169 0.81772928059705 5507 0.318425283433701 2 1 1 -6.77375689475913 LTS-009 NA NA NA NA LTS-009 chr9 108523121 108523498 378 * TMEM38B NA 0 NA 0.932 1 NA NA NA NA NA LTS-009 chr9 108523499 111935762 3412264 * c(MIR548Q, ACTL7B, ACTL7A, TMEM245, FRRS1L, MIR32, EPB41L4B, FAM206A, TMEM38B, ZNF462, RAD23B, IKBKAP, CTNNAL1, KLF4) 0.438353703553817 27 0.0329036840133809 0.947524348196119 1238 2.13824540573067 2 1 1 -6.74691787713561 LTS-009 chr9 111935763 116260494 4324732 * c(FAM225B, MIR3134, MIR4668, AKAP2, PALM2, WDR31, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, TXNDC8, C9orf43, OR2K2, GNG10, FAM225A, C9orf152, SNX30, PALM2-AKAP2, MUSK, POLE3, EPB41L4B, BSPRY, DNAJC25, DNAJC25-GNG10, PTPN3, SLC46A2, INIP, RGS3, SUSD1, LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, HDHD3, HSDL2, PRPF4, PTBP3) 0.426922242898049 91 0.0912252120646443 0.834522640291142 4508 0.333522720233626 2 1 1 -6.7957063019954 LTS-009 chr9 116260495 116263590 3096 * RGS3 NA 0 NA 1.152 1 NA NA NA NA NA LTS-009 chr9 116263591 117074810 811220 * c(KIF12, ZNF618, AMBP, RGS3, MIR455, COL27A1) 0.461676331537265 25 0.0281536261726028 0.9762744764041 845 0.303185665641489 2 1 1 -7.309778689461 LTS-009 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.09 1 NA NA NA NA NA LTS-009 chr9 117085363 117089956 4594 * ORM1 0.447 1 NA 0.211609759229745 46 0.150634048027399 0 0 0 -5.79234499607463 LTS-009 chr9 117089957 117092184 2228 * c(ORM1, ORM2) NA 0 NA 0.552 1 NA NA NA NA NA LTS-009 chr9 117092185 125239347 8147163 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, WHRN, PHF19, FBXW2, LHX6, GGTA1P, GSN, TNC, OR1J1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, PTGS1, LINC00474, TLR4, TRAF1, C5, AKNA, MRRF, RBM18, TNFSF8, ATP6V1G1, TNFSF15) 0.447378360066896 78 0.0672524530473978 0.871714336554376 4094 0.300205279559312 2 1 1 -7.16101589193393 LTS-009 chr9 125239348 125563162 323815 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1) 0.431462057683552 29 0.0410283153456064 0.630382563969621 385 0.321284134301718 2 1 1 -6.85422607195515 LTS-009 chr9 125563163 137735903 12172741 * c(LOC100129034, RNU6ATAC, LOC100272217, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR4669, MIR3960, MIR219B, MIR4672, LOC101448202, RABEPK, CDK9, LAMC3, ZER1, CEL, CELP, POMT1, ZBTB6, NEK6, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, SLC25A25, COL5A1, CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, AK8, TTC16, DBH, STKLD1, OLFML2A, SARDH, DNM1, TOR1A, ENDOG, ENG, NA NA NA NA NA NA NA NA NA LTS-009 AK1, NAIF1, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PHYHD1, CIZ1, GAPVD1, GBGT1, NR6A1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, OBP2B, ST6GALNAC6, HSPA5, ADGRD2, QRFP, SWI5, C9orf50, PTGES2-AS1, IER5L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CFAP77, TMEM8C, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, LRRC8A, BARHL1, SH3GLB2, PSMB7, REXO4, DOLPP1, ZBTB26, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, SET, FAM163B, DDX31, FAM129B, SPTAN1, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SNORD90, MIR601, TSC1, TTF1, VAV2, ZNF79, C9orf16, MAPKAP1, PTGES2, BRD3, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C5, GTF3C4, LHX2, MED27, PTGES, RALGPS1, ADAMTSL2) 0.439834918927977 277 0.0527533057218627 0.894403387245361 16617 0.32188511646155 2 1 1 -7.56645564407899 LTS-009 NA NA NA NA LTS-009 chr9 137735904 138236305 500402 * c(MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, COL5A1, C9orf62, FCN1, FCN2, LOC401557) 0.447563050517709 17 0.0551533290553014 0.654676163340064 309 0.20187905935063 2 1 1 -7.01573818041492 LTS-009 chr9 138236306 138236329 24 * C9orf62 NA 0 NA 0.851 1 NA NA NA NA NA LTS-009 chr9 138236330 138453776 217447 * c(PPP1R26-AS1, C9orf116, C9orf62, OBP2A, LCN1, PAEP, MRPS2, PPP1R26) 0.474860193785818 8 0.0142828568570857 1.018004795576 224 0.375526566775588 4 2 2 -9.21093671316957 LTS-009 chr9 138453777 138454160 384 * PAEP NA 0 NA 0.648 1 NA NA NA NA NA LTS-009 chr9 138454161 138702432 248272 * c(LINC01502, CAMSAP1, GLT6D1, LCN9, SOHLH1, PAEP, KCNT1) 0.422524510341587 12 0.130606162553571 0.751948860210038 382 0.249219920561903 2 1 1 -6.7503745967104 LTS-009 chr9 138702433 139960178 1257746 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, MIR4479, UBAC1, AGPAT2, SDCCAG3, NACC2, LCN8, FAM69B, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, LCN12, C9orf142, PHPT1, LCN15, C9orf172, LCNL1, C9orf139, MIR126, LCN10, NOTCH1, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, CARD9, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, LHX3, CCDC183, SNHG7, TMEM141, EDF1, NA NA NA NA NA NA NA NA NA LTS-009 SAPCD2, C9orf69, CLIC3, ENTPD2, SEC16A) 0.447468232629426 58 0.0362407632640384 0.904877362367235 3708 0.703873061792405 2 1 1 -6.78997624276057 LTS-009 NA NA NA NA LTS-009 chr9 139960179 139996619 36441 * c(MAN1B1-AS1, MAN1B1, SAPCD2, UAP1L1) 0.443 1 NA 0.925595511189909 161 1.07311916826662 3 3 0 -5.76459902779025 LTS-009 chr9 139996620 139997791 1172 * MAN1B1 0.282167564796051 9 0.0794068287015949 1.45610003197914 29 0.429621634427868 12 9 3 -6.73684787612048 LTS-009 chr9 139997792 140003640 5849 * MAN1B1 0.497 1 NA 0.788544234757364 59 0.316575153140936 2 2 0 -5.76441312167107 LTS-009 chr9 140003641 141070283 1066643 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.44558211724545 33 0.0450481434386893 0.893947268537611 2291 0.276989169691131 2 1 1 -6.85609972797812 LTS-009 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.526368804830963 5 0.106519012387461 1 NA NA -5.76488403913761 LTS-009 chr10 94832 94870 39 * TUBB8 0.216 1 NA 1.635 1 NA NA NA NA NA LTS-009 chr10 94871 4890230 4795360 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, TUBB8, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.359531185425725 44 0.0966578171449262 1.06280318269849 1785 0.453639027186094 3 2 1 -6.80254443801493 LTS-009 chr10 4890231 5005459 115229 * c(AKR1C1, AKR1C6P, AKR1E2, AKR1C3) NA 0 NA 0.171 1 NA NA NA NA NA LTS-009 chr10 5005460 5032240 26781 * c(AKR1C1, AKR1C2, AKR1C3) 0.365370775536627 8 0.0757377995832615 0.634796810240928 156 0.348524823810646 3 2 1 -6.81254354920963 LTS-009 chr10 5032241 5446906 414666 * c(AKR1C4, UCN3, AKR1C2, AKR1C8P, TUBAL3, AKR1C3) 0.410637831163644 15 0.0388419262922842 0.952584775759345 300 0.431944243222509 3 2 1 -6.95005121755296 LTS-009 chr10 5446907 5454513 7607 * character(0) NA 0 NA 1.498 1 NA NA NA NA NA LTS-009 chr10 5454514 5708506 253993 * c(NET1, CALML5, ASB13, CALML3) 0.35447348765075 14 0.0588831959834957 1.2659587287308 245 0.362886485840804 6 4 2 -6.85634958275988 LTS-009 chr10 5708507 5762497 53991 * c(FAM208B, ASB13) NA 0 NA 0.594 1 NA NA NA NA NA LTS-009 chr10 5762498 8058641 2296144 * c(MIR3155A, LINC00707, MIR3155B, KIN, GDI2, IL2RA, IL15RA, ITIH2, LOC399715, PRKCQ-AS1, ATP5C1, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ITIH5, TAF3, FBXO18, RBM17) 0.400657923784561 27 0.0674632748040995 0.963142330127911 1850 0.341508126731792 3 2 1 -6.79889886294135 LTS-009 chr10 8058642 8092971 34330 * GATA3-AS1 NA 0 NA 1.516 1 NA NA NA NA NA LTS-009 chr10 8092972 9449683 1356712 * c(GATA3, GATA3-AS1) 0.393295366696123 6 0.0547189790353097 1.52423895949577 107 0.892567029095473 5 3 2 -6.83730935466804 LTS-009 chr10 9449684 9449896 213 * character(0) NA 0 NA 0.264 1 NA NA NA NA NA LTS-009 chr10 9449897 14870261 5420365 * c(MIR1265, MIR4480, OPTN, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, BEND7, SEPHS1, LINC00710, PROSER2, UPF2, NA, CELF2-AS2, CDNF, PHYH, SEC61A2, MCM10, DHTKD1, FRMD4A, CAMK1D, ECHDC3, FAM107B, CCDC3, PRPF18, CDC123, USP6NL) 0.384271711776299 68 0.0838025122674457 0.992239642941257 2430 0.398388962693832 3 2 1 -6.75243323178018 LTS-009 chr10 14870262 14879808 9547 * CDNF NA 0 NA 1.389 1 NA NA NA NA NA LTS-009 chr10 14879809 15413064 533256 * c(PPIAP30, RPP38, C10orf111, FAM171A1, ACBD7, CDNF, HSPA14, OLAH, DCLRE1C, MEIG1, SUV39H2, NMT2) 0.457181762257934 18 0.0322992543267698 1.16721203233965 733 0.632611768404605 4 2 2 -6.91944873958525 LTS-009 chr10 15413065 15555956 142892 * character(0) NA 0 NA 0.892 1 NA NA NA NA NA LTS-009 chr10 15555957 17813397 2257441 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.3644768728515 32 0.14244175026214 0.933709165612478 1387 0.35829969282039 3 2 1 -6.83446040595539 LTS-009 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.265 1 NA NA NA NA NA LTS-009 chr10 17842448 17949683 107236 * c(MRC1, NA, TMEM236) NA 0 NA 0.616389734620946 51 0.375519728731616 1 NA NA -5.76732352216441 LTS-009 chr10 17949684 17952627 2944 * c(MRC1, NA, TMEM236) NA 0 NA 0.088 1 NA NA NA NA NA LTS-009 chr10 17952628 18196475 243848 * c(MRC1, NA, TMEM236) NA 0 NA 0.27303307240534 101 0.197660779023954 0 NA NA -5.94960996868644 LTS-009 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.236 1 NA NA NA NA NA LTS-009 chr10 18198201 18970585 772385 * c(SLC39A12-AS1, SLC39A12, NSUN6, ARL5B, MRC1, CACNB2) 0.398514626269908 13 0.0494628842979958 1.05373175201055 498 0.414588446093753 3 2 1 -6.76649274555027 LTS-009 chr10 18970586 19337857 367272 * character(0) NA 0 NA 0.718 1 NA NA NA NA NA LTS-009 chr10 19337858 20023321 685464 * character(0) 0.194520073529425 9 0.0615868853283266 0.754378668272661 207 0.324742972762192 2 2 0 -6.80994630746496 LTS-009 chr10 20023322 23578974 3555653 * c(NEBL-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, MSRB2, COMMD3, PTF1A, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, DNAJC1, BMI1, MLLT10, PLXDC2, SPAG6) 0.359474237624721 23 0.125963464807869 1.02256042788251 1498 0.498907059493301 3 2 1 -6.76202729835108 LTS-009 chr10 23578975 23580081 1107 * character(0) NA 0 NA 1.274 1 NA NA NA NA NA LTS-009 chr10 23580082 24498311 918230 * c(OTUD1, C10orf67, KIAA1217) 0.281110247748208 4 0.0455219727164806 1.50144180955408 151 0.866683665158481 5 4 1 -6.77167747719054 LTS-009 chr10 24498312 24508523 10212 * KIAA1217 NA 0 NA 0.874 1 NA NA NA NA NA LTS-009 chr10 24508524 25464284 955761 * c(GPR158-AS1, ENKUR, KIAA1217, PRTFDC1, ARHGAP21, MIR603, THNSL1) 0.38681691049574 10 0.050719709077329 1.07470612777118 736 0.437594088397522 3 2 1 -6.74043408528533 LTS-009 chr10 25464285 26856780 1392496 * c(GPR158-AS1, GAD2, MYO3A, APBB1IP, GPR158) 0.462144240998061 3 0.00305505046330392 0.813061994140894 624 0.260015030341553 2 1 1 -14.2907944611377 LTS-009 chr10 26856781 26986714 129934 * c(PDSS1, LINC00264, LINC00202-2) NA 0 NA 1.533 1 NA NA NA NA NA LTS-009 chr10 26986715 33619731 6633017 * c(ABI1, MIR938, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, MPP7, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, ARMC4, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, LYZL1, MASTL, NRP1, ACBD5, ARHGAP12) 0.374236552674343 91 0.0541147042956092 1.01238748215601 3419 0.464161241364635 3 2 1 -6.76932903347377 LTS-009 chr10 33619732 35860472 2240741 * c(LINC00838, CREM, CCNY, PARD3, CUL2, NRP1) NA 0 NA 1.47325032820146 570 0.475899730404752 5 NA NA -5.76443590486498 LTS-009 chr10 35860473 38672144 2811672 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, GJD4, CCNY, SEPT7P9, ZNF248, ZNF33A, ZNF37A, FZD8, ANKRD30A) 0.389256699031138 39 0.0801386029420995 1.04797149025382 828 0.370939618113166 3 2 1 -6.74071946528573 LTS-009 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.832681150953788 5 0.224349726988913 2 NA NA -5.76607347456161 LTS-009 chr10 42379883 47756145 5376263 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, FXYD4, NPY4R, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, NA NA NA NA NA NA NA NA NA LTS-009 LINC00839, ZFAND4, GPRIN2, BMS1) 0.408541133351921 89 0.0760327549570146 0.92803386411989 2166 0.347789057828003 3 2 1 -7.0213216993206 LTS-009 NA NA NA NA LTS-009 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.094 1 NA NA NA NA NA LTS-009 chr10 47903105 48033041 129937 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.43217884021353 42 0.336020847377423 0 NA NA -5.80178534594138 LTS-009 chr10 48033042 59986974 11953933 * c(TIMM23, MIR4294, MTRNR2L5, MIR3924, FAM170B-AS1, PRKG1-AS1, NA, CHAT, ZWINT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, DKK1, CSTF2T, IPMK, SGMS1, PTPN20, GDF2, GDF10, C10orf53, A1CF, NA, FAM21A, NA, AGAP6, GLUD1P7, MBL2, MSMB, LRRC18, NA, OGDHL, PRKG1, MAPK8, ASAH2, WDFY4, ARHGAP22, RBP3, DRGX, PCDH15, NA, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG NA NA NA NA NA NA NA NA NA LTS-009 ) 0.366656378917897 87 0.120842549123624 0.964591131695293 3775 0.431796639018068 3 2 1 -6.87912944265059 LTS-009 NA NA NA NA LTS-009 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.561 1 NA NA NA NA NA LTS-009 chr10 59997544 65384518 5386975 * c(MIR1296, MRLN, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, IPMK, LINC01553, ANK3, NRBF2, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.384753906488302 68 0.0541083116924326 1.10723734664848 2963 0.394052207057945 3 2 1 -6.8628535364599 LTS-009 chr10 65384519 65384567 49 * REEP3 0.326 1 NA 0.575 1 NA NA NA NA NA LTS-009 chr10 65384568 71075798 5691231 * c(DNA2, STOX1, ATOH7, REEP3, SIRT1, HERC4, KIF1BP, CTNNA3, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.380758807356255 63 0.0887193836332178 0.960984315766948 2378 0.444216137830551 3 2 1 -6.80249119588101 LTS-009 chr10 71075799 71078649 2851 * HK1 NA 0 NA 1.857 1 NA NA NA NA NA LTS-009 chr10 71078650 73538062 2459413 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.388607339430487 70 0.0498919329044696 1.13343477487113 2631 0.415364522777865 3 2 1 -6.82257891042899 LTS-009 chr10 73538063 73538985 923 * CDH23 NA 0 NA 0.923 1 NA NA NA NA NA LTS-009 chr10 73538986 76994410 3455425 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.327064270203468 33 0.0674413465707256 1.01169893793761 3865 0.323040354094792 3 2 1 -7.17851205218437 LTS-009 chr10 76994411 81273681 4279271 * c(DLG5-AS1, ZNF503-AS2, LINC00856, PPIF, POLR3A, COMTD1, EIF5AL1, ZCCHC24, ZNF503-AS1, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, ZNF503, DLG5) 0.375847643016103 28 0.0518742884186549 1.16104697527865 1458 0.408934464484581 3 2 1 -6.99935942398334 LTS-009 chr10 81273682 81284837 11156 * EIF5AL1 0.422289684906611 6 0.10019930139477 0.609219529498951 75 0.235342325326513 2 1 1 -6.75845486229714 LTS-009 chr10 81284838 81286233 1396 * character(0) NA 0 NA 1.089 1 NA NA NA NA NA LTS-009 chr10 81286234 86274457 4988224 * c(BMS1P21, NRG3, DYDC1, LINC00858, TMEM254-AS1, PLAC9, LRIT1, GHITM, ANXA11, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00857, CCSER2, RGR, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P, CDHR1) 0.375029377587218 63 0.0744186067610652 0.909604356519529 1753 0.371087939426675 3 2 1 -7.03360217880458 LTS-009 chr10 86274458 86274463 6 * CCSER2 NA 0 NA 1.053 1 NA NA NA NA NA LTS-009 chr10 86274464 95241847 8967384 * c(KLLN, HECTD2-AS1, FAS-AS1, GRID1-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, ADIRF, LDB3, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP26A1, CPEB3, WAPL, IFIT5, MYOF, ANKRD1, GLUD1, FLJ37201, GRID1, HHEX, HTR7, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, LIPA, MIR107, LINC00863, IFIT1B, MIR346, PANK1, CCSER2, EXOC6, FAM35A, MARCH5, PPP1R3C, RNLS, NA NA NA NA NA NA NA NA NA LTS-009 PTEN, STAMBPL1, ACTA2, FAM25A, LIPK, LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, PCGF5, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, OPN4, MINPP1, KIF20B) 0.38111780848281 101 0.0707438217573216 1.07857102562936 5525 0.522082182622032 3 2 1 -6.79288096293847 LTS-009 NA NA NA NA LTS-009 chr10 95241848 96480220 1238373 * c(PLCE1-AS1, FRA10AC1, CYP2C19, CYP2C18, SLC35G1, TBC1D12, MYOF, PIPSL, HELLS, FFAR4, PLCE1, PDE6C, CEP55, RBP4, NOC3L, LGI1) 0.335875141356187 22 0.140658193052262 0.945554975745868 1291 0.322106810560745 3 2 1 -6.85568339732868 LTS-009 chr10 96480221 96484088 3868 * c(CYP2C19, CYP2C18) NA 0 NA 0.681 1 NA NA NA NA NA LTS-009 chr10 96484089 96954470 470382 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18) 0.373516641585323 9 0.0330244017525089 0.676431688945883 214 0.235830175046408 3 2 1 -7.59642551294259 LTS-009 chr10 96954471 96961220 6750 * ACSM6 NA 0 NA 2.115 1 NA NA NA NA NA LTS-009 chr10 96961221 98119046 1157826 * c(C10orf131, MIR3157, SORBS1, ACSM6, DNTT, TCTN3, BLNK, CC2D2B, CCNJ, ALDH18A1, ENTPD1-AS1, PDLIM1, OPALIN, ENTPD1, ZNF518A) 0.386917565865207 26 0.0493583443183233 0.922487031391971 1385 0.31709334713183 3 2 1 -6.80562521821517 LTS-009 chr10 98119047 98124319 5273 * OPALIN NA 0 NA 1.238 1 NA NA NA NA NA LTS-009 chr10 98124320 99625818 1501499 * c(FRAT1, SLIT1-AS1, ARHGAP19-SLIT1, MIR5692C2, HOGA1, PIK3AP1, MORN4, ZFYVE27, RRP12, FRAT2, C10orf12, ANKRD2, GOLGA7B, C10orf62, EXOSC1, PGAM1, CRTAC1, PI4K2A, TM9SF3, AVPI1, MMS19, SFRP5, SLIT1, TLL2, UBTD1, MARVELD1, ZDHHC16, LCOR, ARHGAP19) 0.39311885280219 75 0.0518951645927451 1.03873522390398 2443 0.348332194964654 3 2 1 -6.74253880203476 LTS-009 chr10 99625819 99627322 1504 * c(GOLGA7B, CRTAC1) 0.258 1 NA 0.865178707225599 31 0.241156197987854 2 2 0 -5.76451827597828 LTS-009 chr10 99627323 102589236 2961914 * c(DNMBP-AS1, MIR1287, MIR4685, ERLIN1, CHUK, ABCC2, COX15, CPN1, NKX2-3, DNMBP, SEC31B, CNNM1, R3HCC1L, GOT1, BLOC1S2, HPS1, GOLGA7B, NDUFB8, PAX2, CUTC, CRTAC1, CWF19L1, HIF1AN, ENTPD7, HPSE2, SCD, SNORA12, WNT8B, SLC25A28, LOXL4, PYROXD2, OLMALINC, PKD2L1) 0.321219053083188 52 0.068281256137158 1.10349955937456 2742 0.349905171231343 4 3 1 -6.95020499124857 LTS-009 chr10 102589237 127967678 25378442 * c(TLX1NB, MIR936, TEX36-AS1, KCNIP2-AS1, MIR1307, MIR2110, MIR3158-1, MIR4295, MIR3158-2, MIR4296, MIR3941, MIR3663, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, FAM24B-CUZD1, MIR4680, MIR4483, MIR4682, MIR4482, MIR4484, MIR4681, ACTR1A, FANK1-AS1, SMNDC1, NPM3, TACC2, LBX1, MGEA5, PRDX3, VAX1, ATE1, SEC23IP, SORCS1, BTBD16, FAM24A, PSTK, MMP21, SFXN2, PDZD8, BORCS7, GSTO2, SFR1, CALHM3, PNLIPRP3, SFXN4, NA NA NA NA NA NA NA NA NA LTS-009 CPXM2, ADD3, COL17A1, TRUB1, VTI1A, C10orf82, CACUL1, CTBP2, ADRA2A, ADRB1, CYP17A1, CFAP58, DMBT1, DUSP5, EMX2OS, PLPP4, FAM24B, EMX2, FGF8, FGFR2, RAB11FIP2, INPP5F, NT5C2, PDCD11, SORCS3, PPRC1, FAM175B, CALHM1, CASC2, DPCD, HSPA12A, ATRNL1, EDRF1, GFRA1, PDCD4, POLL, RBM20, PDCD4-AS1, LOC283038, WDR11-AS1, PRLHR, GPR26, GRK5, HABP2, KCNIP2, HMX2, TLX1, KCNK18, VWA2, NANOS1, HMX3, ACADSB, NHLRC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CCDC172, DMBT1P1, ENO4, ARMS2, TEX36, GUCY2GP, NKX1-2, ABLIM1, LBX1-AS1, C10orf120, LOC399815, METTL10, FLJ37035, ARL3, MXI1, NFKB2, NRAP, OAT, CUZD1, PAX2, CALHM2, CHST15, SUFU, ACSL5, PITX3, PNLIP, PNLIPRP1, PNLIPRP2, ZRANB1, NSMCE4A, CNNM2, WBP1L, CCDC186, WDR11, SLF2, DHX32, TDRD1, HTRA1, PSD, BCCIP, C10orf2, AS3MT, MIR146B, GPAM, SHTN1, FAM160B1, SEMA4G, PLEKHA1, RGS10, FAM204A, LHPP, SNORA19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 IKZF5, ZDHHC6, RPL13AP6, FBXW4, SLC18A2, TAF5, MIR608, MIR609, TCF7L2, TECTB, TIAL1, RPEL1, UROS, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, MCMBP, C10orf95, PLEKHS1, PDZD7, OBFC1, C10orf88, CFAP43, SHOC2, ADAM12, TRIM8, KAZALD1, SFXN3, ELOVL3, CASP7, PCGF6, LZTS2, MRPL43, AFAP1L2, USMG5, ITPRIP, EIF3A, GBF1, LDB1, BTRC, INA, SMC3, NEURL1, BUB3, NOLC1, BBIP1, FANK1, GSTO1, BAG3, SH3PXD2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 FAM53B, SLK, DCLRE1A) 0.318179514969095 367 0.0817766655485876 1.26029688697276 17588 0.469873026366267 4 3 1 -6.73813226791109 LTS-009 NA NA NA NA LTS-009 chr10 127967679 129914794 1947116 * c(LINC00601, C10orf90, CLRN3, DOCK1, FOXI2, MKI67, PTPRE, NPS, FAM196A, ADAM12) 0.346143152266721 39 0.0524742980592891 1.06488524145213 1112 0.337951126720183 3 2 1 -7.09673880919196 LTS-009 chr10 129914795 134693137 4778343 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.306311958120312 38 0.0873070805593079 1.23285623666943 1377 0.460938132348071 4 3 1 -6.7469085211246 LTS-009 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.515 1 NA NA NA NA NA LTS-009 chr10 134694406 134756359 61954 * CFAP46 NA 0 NA 0.578992808433425 171 0.154699284397347 1 NA NA -5.7648769882964 LTS-009 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.683 1 NA NA NA NA NA LTS-009 chr10 134884462 135051519 167058 * c(VENTX, UTF1, ADGRA1, KNDC1) 0.334547908377692 14 0.0514628319947812 0.944404935854017 406 0.286582975620864 4 3 1 -6.88578520670548 LTS-009 chr10 135051520 135051543 24 * VENTX 0.32 1 NA 1.875 1 NA NA NA NA NA LTS-009 chr10 135051544 135237240 185697 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, MTG1) 0.322919209788891 40 0.0544627842824334 1.26911431240276 737 0.464019346821527 4 3 1 -6.73730993567422 LTS-009 chr10 135237241 135267393 30153 * SPRN NA 0 NA 0.792 1 NA NA NA NA NA LTS-009 chr10 135267394 135438977 171584 * c(CYP2E1, SPRNP1, FRG2B, SCART1, SYCE1) 0.138597431031362 5 0.00856154191720159 0.936684561301151 293 0.34822008684068 4 4 0 -6.82443235172974 LTS-009 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 0.741575416638469 7 0.545206208258682 2 NA NA -5.76475404617258 LTS-009 chr11 193025 193096 72 * SCGB1C1 0.134 1 NA 0.222 1 NA NA NA NA NA LTS-009 chr11 193097 1013167 820071 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.231111372262828 114 0.0685379531130223 0.848822275542966 3008 0.402496429460791 2 2 0 -6.77849543750484 LTS-009 chr11 1013168 1016834 3667 * MUC6 0.27 1 NA 0.802663940924866 39 0.206290902785847 2 2 0 -5.76441387865627 LTS-009 chr11 1016835 1018483 1649 * MUC6 0.333004666642199 37 0.0881025116131915 1.04595687363279 74 0.480465870583188 10 7 3 -6.74030084331218 LTS-009 chr11 1018484 1018580 97 * MUC6 NA 0 NA 0.459 1 NA NA NA NA NA LTS-009 chr11 1018581 1260217 241637 * c(MUC2, MUC6, MUC5B) 0.320847477811334 72 0.0946386381505245 0.709251491466465 762 0.283684750977257 1 1 0 -6.84632893462106 LTS-009 chr11 1260218 1260219 2 * MUC5B 0.235 1 NA 1.583 1 NA NA NA NA NA LTS-009 chr11 1260220 1288736 28517 * MUC5B 0.274607947152995 13 0.0386058318963632 0.655578035599341 221 0.189514979887633 1 1 0 -7.00425614061231 LTS-009 chr11 1288737 1295547 6811 * character(0) NA 0 NA 1.633 1 NA NA NA NA NA LTS-009 chr11 1295548 3239617 1944070 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MOB2, CARS, SYT8, BRSK2, NA NA NA NA NA NA NA NA NA LTS-009 CD81) 0.217915633757586 71 0.0685269439878496 0.885921348418035 2353 0.301203635836579 2 2 0 -6.87833589550867 LTS-009 NA NA NA NA LTS-009 chr11 3239618 4185675 946058 * c(MIR4687, OR7E12P, MRGPRE, ART5, PGAP2, MRGPRG-AS1, MRGPRG, RHOG, ART1, NUP98, CHRNA10, RRM1, TSSC2, STIM1, TRPC2, ZNF195) 0.224901974012951 24 0.0476049565072585 0.790233989886699 919 0.281778701651968 2 2 0 -6.75912546288218 LTS-009 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.536 1 NA NA NA NA NA LTS-009 chr11 4229252 5603205 1373954 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR51T1, OR51A4, OR51A2, UBQLN3, TRIM68, MMP26, TRIM21, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2) 0.226959231014302 78 0.0618681756816149 0.577340214632905 1637 0.248213420060317 1 1 0 -7.48553461280009 LTS-009 chr11 5603206 5617815 14610 * c(TRIM6, HBG2) NA 0 NA 1.133 1 NA NA NA NA NA LTS-009 chr11 5617816 5776484 158669 * c(TRIM22, TRIM6, HBG2, OR56B1, OR52N4, TRIM6-TRIM34, TRIM34, TRIM5) 0.265528796676366 5 0.0366565137458542 0.669850524779609 373 0.306242163006774 1 1 0 -7.26612788386971 LTS-009 chr11 5776485 5776528 44 * c(TRIM22, OR52N4, TRIM5) NA 0 NA 0.401 1 NA NA NA NA NA LTS-009 chr11 5776529 5809362 32834 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) NA 0 NA 0.306891253405279 42 0.147000691331818 0 NA NA -5.77521422724732 LTS-009 chr11 5809363 6221527 412165 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.215002967769302 29 0.0354697192718194 0.524642716327131 403 0.214836928604871 2 2 0 -7.54341140727042 LTS-009 chr11 6221528 6226713 5186 * character(0) NA 0 NA 0.868 1 NA NA NA NA NA LTS-009 chr11 6226714 6735905 509192 * c(TRIM3, PRKCDBP, TPP1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, GVINP1, MRPL17, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.215002661674931 30 0.0381283525000467 0.767174970528514 1878 0.243624315406049 2 2 0 -6.73995878167684 LTS-009 chr11 6735906 6978029 242124 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, OR2AG2, OR10A2, GVINP1, ZNF215, OR6A2) 0.24007998813437 19 0.0608955101620369 0.532118831228834 373 0.256405580452123 2 2 0 -7.17122498579473 LTS-009 chr11 6978030 8646565 1668536 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, RBMXL2, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, OR10A6, LMO1, CYB5R2, STK33, TUB, ZNF214, ZNF215, RIC3, PPFIBP2, EIF3F, TRIM66) 0.199506233342736 50 0.0619892189441529 0.724138682712014 1769 0.287009016073351 2 2 0 -6.87687054096185 LTS-009 chr11 8646566 13716529 5069964 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, LOC644656, RASSF10, ST5, SNORA23, SNORA3B, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, SBF2, FAR1, BTBD10, MICALCL, MICAL2, NA NA NA NA NA NA NA NA NA LTS-009 CTR9, TRIM66) 0.234735677189768 96 0.0470204835916538 0.87019133945507 4088 0.334859872206288 2 2 0 -7.04552804765145 LTS-009 NA NA NA NA LTS-009 chr11 13716530 13721851 5322 * FAR1 NA 0 NA 1.615 1 NA NA NA NA NA LTS-009 chr11 13721852 14287309 565458 * c(SPON1, FAR1) 0.180337619608851 5 0.0111040533139931 1.13910509850353 261 0.329602366737788 3 3 0 -7.49591538539788 LTS-009 chr11 14287310 17630043 3342734 * c(USH1C, SPON1, OR7E14P, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, OTOG, NCR3LG1, KCNJ11, INSC, NUCB2, PDE3B, PIK3C2A, SOX6, PSMA1, RPS13, ABCC8, CALCA, CALCB) 0.206614690712213 33 0.0638480232721231 0.824246301262211 2163 0.519021736774587 2 2 0 -6.75254343556257 LTS-009 chr11 17630044 19247464 1617421 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, OTOG, KCNC1, LDHA, LDHC, MYOD1, LOC494141, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, E2F8, CSRP3, PTPN5) 0.217416403693252 48 0.0832813499211009 0.713402908291322 2254 0.279461633089577 2 2 0 -6.87862061716761 LTS-009 chr11 19247465 19250965 3501 * E2F8 NA 0 NA 1.009 1 NA NA NA NA NA LTS-009 chr11 19250966 20473856 1222891 * c(LOC100126784, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, DBX1, NAV2-AS4, E2F8, NAV2) 0.208451412672044 7 0.0518280122823831 0.927855560112471 606 0.291171379283018 2 2 0 -6.9398215688209 LTS-009 chr11 20473857 20483526 9670 * PRMT3 NA 0 NA 0.69 1 NA NA NA NA NA LTS-009 chr11 20483527 25104154 4620628 * c(CCDC179, PRMT3, ANO5, FANCF, SVIP, GAS2, LUZP2, NELL1, SLC17A6, SLC6A5) 0.203040778095798 32 0.0567113428803297 0.734798610097837 1033 0.258914387092308 2 2 0 -7.01229613165606 LTS-009 chr11 26352929 47603399 21250471 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, LINC00678, EIF3M, CELF1, CHRM4, PTPMT1, C11orf74, LARGE2, DNAJC24, ARL14EP, CRY2, LDLRAD3, MUC15, C11orf94, CSTF3, SLC5A12, DDB2, METTL15, IMMP1L, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, FSHB, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, HARBI1, LINC00294, NA NA NA NA NA NA NA NA NA LTS-009 COMMD9, PACSIN3, CSTF3-AS1, DCDC1, CD82, KCNA4, DKFZp779M0652, FIBIN, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, DKFZp686K1684, MYBPC3, NDUFS3, CCDC73, BDNF-AS, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, LIN7C, SLC35C1, TCP11L1, LGR4, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, RAPSN, RCN1, ALX4, BDNF, ANO3, SLC1A2, SPI1, SNORD67, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 MIR610, TRAF6, SEC14L1P1, MPPED2, WT1, PRRG4, C11orf49, ZNF408, QSER1, PRR5L, PDHX, KIF18A, BBOX1, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, CCDC34, SLC39A13, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.223911388274434 241 0.0475043726603498 0.81895321067994 11388 0.309430161231167 2 2 0 -6.8609756529839 LTS-009 NA NA NA NA LTS-009 chr11 47603400 47603666 267 * NDUFS3 NA 0 NA 0.521 1 NA NA NA NA NA LTS-009 chr11 47603667 47857253 253587 * c(C1QTNF4, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, AGBL2) 0.264270673254296 15 0.0657082295345981 0.70239667349626 610 0.217971607892303 1 1 0 -7.05042793943608 LTS-009 chr11 47857254 48164575 307322 * c(NUP160, PTPRJ) NA 0 NA 0.716983391566612 161 0.447963997191184 2 NA NA -5.77440336977945 LTS-009 chr11 48164576 48166167 1592 * PTPRJ NA 0 NA 0.566 1 NA NA NA NA NA LTS-009 chr11 48166168 48346419 180252 * c(OR4X2, OR4B1, OR4S1, OR4X1, PTPRJ) NA 0 NA 0.525159212514648 170 0.169621585341353 1 NA NA -5.78852145805381 LTS-009 chr11 48346420 48346423 4 * character(0) 0.4 1 NA 0.874 1 NA NA NA NA NA LTS-009 chr11 48346424 48388657 42234 * c(OR4C3, OR4C45) 0.358274555595413 95 0.0503626868223307 0.879501178303982 179 0.510392045869742 6 4 2 -6.78954955458036 LTS-009 chr11 48388658 48388675 18 * character(0) NA 0 NA 0.629 1 NA NA NA NA NA LTS-009 chr11 48388676 49402791 1014116 * c(FOLH1, TRIM49B, OR4A47, TRIM64C) 0.301953557502424 8 0.101168088559867 0.670362376108584 280 0.482058437030978 1 1 0 -6.8026249031608 LTS-009 chr11 49402792 49403246 455 * character(0) NA 0 NA 0.498 1 NA NA NA NA NA LTS-009 chr11 49403247 51526755 2123509 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) 0.339677258436734 4 0.125566383505565 0.478450080161538 182 0.166479196691996 1 1 0 -7.92722863542432 LTS-009 chr11 51526756 51527703 948 * character(0) NA 0 NA 0.575598355795076 5 0.108151282932751 1 NA NA -5.76441651183342 LTS-009 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.261 1 NA 0.381567245193382 23 0.150041733324867 0 0 0 -5.78824587755683 LTS-009 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.296332859051959 6 0.0253567873885212 0.43975433967296 77 0.129598300190114 1 1 0 -7.24997298490555 LTS-009 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.118 1 NA NA NA NA NA LTS-009 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.111145763988563 67 0.0278638789211064 0 NA NA -14.2399963424609 LTS-009 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.431 1 NA NA NA NA NA LTS-009 chr11 55432533 56458361 1025829 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR8J3, TRIM51) 0.265655546976654 39 0.0743844193051046 0.497300177917165 878 0.24568770658161 1 1 0 -7.04279951228496 LTS-009 chr11 56458362 56458458 97 * OR8U8 NA 0 NA 0.753 1 NA NA NA NA NA LTS-009 chr11 56458459 56468835 10377 * c(OR8U8, OR9G9) 0.328193787415371 16 0.0690283758078275 0.873939549303325 52 0.560618158336861 4 3 1 -6.74764936541139 LTS-009 chr11 56468836 56508604 39769 * OR8U8 0.194 1 NA 0.619198467980315 5 1.14643547572465 1 1 0 -5.76453967831327 LTS-009 chr11 56508605 57068372 559768 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, TNKS1BP1) 0.216961003662498 8 0.0546872602035559 0.606227964882279 252 0.23578965766893 2 2 0 -7.15088972802975 LTS-009 chr11 57068373 57099294 30922 * c(SSRP1, TNKS1BP1) NA 0 NA 1.01306236866635 193 0.337825564445114 3 NA NA -5.76442465444125 LTS-009 chr11 57099295 57099647 353 * SSRP1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-009 chr11 57099648 57596665 497018 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, UBE2L6) 0.246138436832297 15 0.0471272845852692 0.75220943252404 1229 0.247919095404257 2 2 0 -6.99922489019143 LTS-009 chr11 57596666 57798344 201679 * OR9Q1 NA 0 NA 0.401 1 NA NA NA NA NA LTS-009 chr11 57798345 58322500 524156 * c(OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1, LPXN) 0.207769810199628 16 0.0706608979563662 0.528568965840188 400 0.279509978973676 2 2 0 -7.34752328300569 LTS-009 chr11 58322501 58331589 9089 * LPXN NA 0 NA 1.06 1 NA NA NA NA NA LTS-009 chr11 58331590 58393231 61642 * c(CNTF, ZFP91-CNTF, ZFP91, LPXN) NA 0 NA 0.876189013119845 217 0.257060293751594 2 NA NA -5.76958066548299 LTS-009 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.465 1 NA NA NA NA NA LTS-009 chr11 58476545 58894204 417660 * c(GLYAT, GLYATL2, LOC283194, FAM111B, GLYATL1) 0.326 1 NA 0.549299793777831 216 0.146935925027674 1 1 0 -5.7788452591549 LTS-009 chr11 58894205 58894285 81 * FAM111B NA 0 NA 0.914 1 NA NA NA NA NA LTS-009 chr11 58894286 58980455 86170 * c(MPEG1, DTX4, FAM111B, FAM111A) 0.206420838326594 3 0.0591805148113239 0.771686846097212 306 0.223777380153634 2 2 0 -6.74665764920941 LTS-009 chr11 58980456 59056111 75656 * MPEG1 NA 0 NA 0.503 1 NA NA NA NA NA LTS-009 chr11 59056112 59282868 226757 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) 0.220448862052766 11 0.0900693672071194 0.492177281287554 158 0.360152476343337 2 2 0 -6.96818153706081 LTS-009 chr11 59282869 59282899 31 * OR4D9 NA 0 NA 0.633 1 NA NA NA NA NA LTS-009 chr11 59282900 59610544 327645 * c(MIR3162, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, OR10V2P) NA 0 NA 0.729900057207326 470 0.258394330118013 2 NA NA -5.78636879734692 LTS-009 chr11 59610545 60539074 928530 * c(OOSP2, MS4A15, MS4A2, MS4A6E, GIF, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, MS4A8, MS4A14, MS4A1, MS4A3) 0.242697347780375 42 0.0664829582662911 0.567770967664536 911 0.259807269580146 1 1 0 -7.15776784785713 LTS-009 chr11 60539075 62752231 2213157 * c(MIR1908, HNRNPUL2-BSCL2, MIR4488, NXF1, TAF6L, SCGB1D2, SCGB1D1, PTGDR2, CHRM1, RPLP0P2, DDB1, EEF1G, MS4A15, VWCE, CYB561A3, PPP1R32, LRRN4CL, HNRNPUL2, FEN1, ZP1, GANAB, SNHG1, FTH1, EML3, TKFC, DKFZP434K028, B3GAT3, BSCL2, PRPF19, GNG3, TTC9C, MS4A10, INCENP, TMEM179B, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, TMEM216, SLC15A3, TMEM138, PGA5, POLR2G, WDR74, SDHAF2, TMEM132A, VPS37C, NA NA NA NA NA NA NA NA NA LTS-009 RAB3IL1, ROM1, PGA3, PGA4, TUT1, SLC3A2, STX5, SNORA57, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, METTL12, AHNAK, TMEM223, TMEM109, CCDC86, LBHD1, UQCC3, ZBTB3, CPSF7, ASRGL1, INTS5, SYT7, CD5, MTA2, CD6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, FADS2) 0.217859889979902 83 0.0484743586241219 0.81202307497529 5608 0.289012236044566 2 2 0 -6.7415043552413 LTS-009 NA NA NA NA LTS-009 chr11 62752232 62752295 64 * SLC22A6 NA 0 NA 0.544 1 NA NA NA NA NA LTS-009 chr11 62752296 63177453 425158 * c(SLC22A9, SLC22A24, SLC22A25, SLC22A10, SLC22A6, SLC22A8) 0.206707716851062 13 0.100870696616497 0.59365092767065 422 0.237610229771608 2 2 0 -7.10219905518363 LTS-009 chr11 63177454 63177730 277 * SLC22A9 NA 0 NA 1.219 1 NA NA NA NA NA LTS-009 chr11 63177731 63527139 349409 * c(RTN3, PLA2G16, HRASLS5, ATL3, HRASLS2, RARRES3, LGALS12) 0.217 1 NA 0.707488003068114 602 0.224157304939346 2 2 0 -5.82166518426177 LTS-009 chr11 63527140 63527254 115 * RTN3 NA 0 NA 1.211 1 NA NA NA NA NA LTS-009 chr11 63527255 64703014 1175760 * c(MIR1237, LOC100996455, RASGRP2, RTN3, EHD1, STIP1, SLC22A12, COX8A, C11orf84, GPHA2, MARK2, ESRRA, FKBP2, ATG2A, FLRT1, PRDX5, TEX40, PPP1R14B, CCDC88B, RCOR2, MACROD1, DNAJC4, MIR192, MIR194-2, MEN1, KCNK4, TRMT112, PLCB3, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, PYGM, MAP4K2, C11orf95, VEGFB, SF1, NAA40, FERMT3, TRPT1, NUDT22, RPS6KA4, NRXN2) 0.221311976324866 72 0.0606827723939399 0.842964309426335 3351 0.350171440633009 2 2 0 -6.75843124766567 LTS-009 chr11 64703015 64705657 2643 * GPHA2 NA 0 NA 0.192 1 NA NA NA NA NA LTS-009 chr11 64705658 64757729 52072 * c(BATF2, MAJIN) 0.125 1 NA 0.585743664568917 108 0.193381165306212 1 1 0 -5.76510926632919 LTS-009 chr11 64757730 64761808 4079 * BATF2 NA 0 NA 0.834 1 NA NA NA NA NA LTS-009 chr11 64761809 73387424 8625616 * c(NAALADL1, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR548K, MIR3165, MIR3664, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, STARD10, YIF1A, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, MRGPRD, MRGPRF, ARAP1, CATSPER1, CPT1A, CST6, CTSW, GRK2, DHCR7, CTTN, FAU, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, NA NA NA NA NA NA NA NA NA LTS-009 LRTOMT, TIGD3, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, POLA2, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, BRMS1, ANAPC15, MYEOV, NPAS4, SLC25A45, NEAT1, ALG1L9P, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, MALAT1, KRTAP5-9, KRTAP5-10, SPDYC, GPR152, DOC2GP, PCNX3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, PC, GAL, KMT5B, PDE2A, CABP2, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP6R3, RNF121, PACS1, CABP4, CD248, CORO1B, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PLEKHB1, RAB6A, RAD9A, RBM4, CCND1, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, RBM4B, FRMD8, RNASEH2C, EIF1AD, SYVN1, RELT, PPFIA1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.224864323451748 218 0.0639094512546216 0.86757301509086 13808 0.296575729820531 2 2 0 -7.15602607254077 LTS-009 NA NA NA NA LTS-009 chr11 73387425 73387452 28 * RAB6A NA 0 NA 0.672 1 NA NA NA NA NA LTS-009 chr11 73387453 73427492 40040 * RAB6A NA 0 NA 0.536689928893604 51 0.156119353537669 1 NA NA -5.76778504834268 LTS-009 chr11 73427493 73429699 2207 * RAB6A NA 0 NA 0.934 1 NA NA NA NA NA LTS-009 chr11 73429700 82641295 9211596 * c(KCNE3, MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, RAB6A, NA NA NA NA NA NA NA NA NA LTS-009 SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.229799380520976 120 0.0626769673875209 0.821623976299709 6150 0.307624421801411 2 2 0 -6.82489752517584 LTS-009 NA NA NA NA LTS-009 chr11 82641296 82669149 27854 * DDIAS 0.185569233845744 2 0.0466690475583121 0.430718801506386 78 0.197272065260816 2 2 0 -7.12061373584679 LTS-009 chr11 82669150 94250908 11581759 * c(NAALAD2, MIR1304, SNORA70E, RAB30-AS1, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, DEUP1, DLG2, FOLH1B, DDIAS, CCDC83, CCDC89, RAB38, PANX1, CHORDC1, RAB30, C11orf54, GRM5, ANKRD42, HEPHL1, VSTM5, TRIM77, IZUMO1R, MRE11A, MTNR1B, NOX4, HIKESHI, PCF11, SYTL2, ANKRD49, TMEM126B, SMCO4, TRIM49, CREBZF, CCDC90B, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, NA NA NA NA NA NA NA NA NA LTS-009 TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TYR, TAF1D, PICALM, FZD4, TMEM126A, CEP295, OR7E2P, EED, MED17) 0.213697559200486 104 0.0786955331041425 0.761176321517281 5461 0.316986439510185 2 2 0 -6.86747077530162 LTS-009 NA NA NA NA LTS-009 chr11 94250909 94261216 10308 * C11orf97 NA 0 NA 1.094 1 NA NA NA NA NA LTS-009 chr11 94261217 94705392 444176 * c(PIWIL4, AMOTL1, FUT4, CWC15, C11orf97) 0.213437592550048 6 0.034885049328712 0.923368261957562 525 0.300035291054007 2 2 0 -6.79893980478044 LTS-009 chr11 94705393 94730188 24796 * c(CWC15, KDM4D) NA 0 NA 0.395 1 NA NA NA NA NA LTS-009 chr11 94730189 94862844 132656 * c(ENDOD1, KDM4E, KDM4D) 0.16071152948943 3 0.123174672721303 0.672470829670231 160 0.254910309097067 2 2 0 -6.882028492628 LTS-009 chr11 94862845 94862901 57 * ENDOD1 NA 0 NA 0.927 1 NA NA NA NA NA LTS-009 chr11 94862902 99690471 4827570 * c(MIR1260B, JRKL-AS1, FAM76B, SESN3, ENDOD1, CNTN5, CCDC82, MAML2, JRKL, MTMR2, CEP57) 0.260655659260943 9 0.0578835036949216 0.921844975895219 992 0.385001311475078 2 2 0 -7.47936659114453 LTS-009 chr11 99690472 102935034 3244563 * c(WTAPP1, MIR3920, LOC101054525, YAP1, TMEM123, ARHGAP42, ANGPTL5, BIRC2, BIRC3, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, PGR, CNTN5, CEP126, MMP27, TRPC6, TMEM133, DCUN1D5, C11orf70, MMP20) 0.205848078620853 42 0.0794407462949156 0.755339989419181 2240 0.323644008642548 2 2 0 -6.791348638348 LTS-009 chr11 102935035 103194774 259740 * c(DYNC2H1, DCUN1D5) 0.2051145019305 10 0.0457054579770172 0.934599805572845 419 0.343030674678225 2 2 0 -6.79509431456234 LTS-009 chr11 103194775 103228980 34206 * DYNC2H1 NA 0 NA 0.754 1 NA NA NA NA NA LTS-009 chr11 103228981 105929935 2700955 * c(CASP12, MIR4693, CARD16, KBTBD3, GRIA4, DDI1, CARD17, CARD18, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, MSANTD4) 0.246865385875328 23 0.0691864639826243 0.711811289246191 882 0.253505052246879 2 2 0 -7.15627069352068 LTS-009 chr11 105929936 105948134 18199 * KBTBD3 NA 0 NA 1.862 1 NA NA NA NA NA LTS-009 chr11 105948135 114277683 8329549 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, RBM7, COLCA2, PIH1D2, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANKK1, TIMM8B, GUCY1A2, HSPB2, HTR3A, C11orf53, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, ATM, NNMT, NPAT, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, TTC12, PPP2R1B, C11orf57, ELMOD1, TEX12, ARHGAP20, USP28, NA NA NA NA NA NA NA NA NA LTS-009 PTS, RDX, AASDHPPT, SDHD, LOC643923, CLDN25, C11orf1, SLN, ZBTB16, ALG9, CUL5, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ALKBH8, ZW10, FDXACB1) 0.20785087764231 97 0.0626232187433159 0.807685541383671 5861 0.326384402271141 2 2 0 -6.75107254709132 LTS-009 NA NA NA NA LTS-009 chr11 114277684 114421747 144064 * c(RBM7, NXPE1, REXO2) 0.439 1 NA 0.67823098771528 215 0.359726371957945 2 2 0 -5.78144837401725 LTS-009 chr11 114421748 114421967 220 * NXPE1 0.411645736258101 12 0.0685297988712453 0.882391053731267 16 0.251727763003342 5 3 2 -6.7362157148296 LTS-009 chr11 114421968 114569054 147087 * c(NXPE1, NXPE2, NXPE4) 0.211 1 NA 0.682178993690918 69 0.279868473249204 2 2 0 -5.79105884910607 LTS-009 chr11 114569055 123493347 8924293 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4493, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, NXPE2, JAML, TTC36, DDX6, DPAGT1, MPZL3, TBCEL, TMEM136, OAF, CEP164, PHLDB1, ARHGEF12, SIK3, BACE1, TRIM29, CADM1, SLC37A4, RNF214, POU2F3, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, HSPA8, APOA1, APOA4, CCDC84, LOC341056, APOC3, IL10RA, ARCN1, BSX, NA NA NA NA NA NA NA NA NA LTS-009 MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, CRTAM, TMPRSS4, IFT46, DSCAML1, GRAMD1B, NECTIN1, RPS25, SC5D, SCN2B, SCN4B, ABCG4, CXCR5, LOC649133, RPL23AP64, SORL1, TAGLN, TECTA, THY1, UPK2, RNF26, NLRX1, CLMP, PDZD3, C11orf63, MFRP, TMPRSS13, BUD13, TMEM25, UBASH3B, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.220843944661418 177 0.0610993805958263 0.822444573102432 9418 0.440022311696366 2 2 0 -6.7681798073009 LTS-009 NA NA NA NA LTS-009 chr11 123493348 123493452 105 * GRAMD1B NA 0 NA 0.567 1 NA NA NA NA NA LTS-009 chr11 123493453 124441071 947619 * c(OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A, SCN3B, GRAMD1B, ZNF202) 0.214096138721068 33 0.0399367634612217 0.615713587439467 1022 0.267105709214614 2 2 0 -7.21707272444089 LTS-009 chr11 124441072 124441179 108 * character(0) NA 0 NA 0.768 1 NA NA NA NA NA LTS-009 chr11 124441180 125542255 1101076 * c(CHEK1, PANX3, TMEM218, SLC37A2, HEPACAM, VSIG2, STT3A, NRGN, SPA17, SIAE, ROBO4, ACRV1, PKNOX2, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM, EI24, FEZ1) 0.231645586605487 32 0.0399868930138768 0.770280371246946 1796 0.290361632709968 2 2 0 -6.8433326715219 LTS-009 chr11 125542256 125708760 166505 * c(PATE3, CHEK1, PATE1, PATE2, PATE4, ACRV1) 0.377 1 NA 0.575194822624588 193 0.192908309651613 1 1 0 -5.764720719787 LTS-009 chr11 125708761 129830964 4122204 * c(MIR3167, SENCR, KIRREL3-AS2, TIRAP, TMEM45B, ETS1, C11orf45, HYLS1, FLI1, KIRREL3-AS3, DCPS, DDX25, KCNJ1, KCNJ5, PATE4, ST3GAL4-AS1, NFRKB, CDON, FOXRED1, PRDM10, TP53AIP1, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4, BARX2, ARHGAP32) 0.231493435249882 70 0.0605645284948314 0.813733244955405 2592 0.339598612074071 2 2 0 -6.78764421216443 LTS-009 chr11 129830965 131240525 1409561 * c(ADAMTS8, ADAMTS15, C11orf44, ZBTB44, APLP2, SNX19, LINC00167, NTM, PRDM10, ST14) 0.258710558853928 28 0.0848866346413895 0.916583492661004 1028 0.349607332212452 2 2 0 -7.02282811161032 LTS-009 chr11 131240526 134856661 3616136 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, LOC283177, THYN1, OPCML, NTM, JAM3, GLB1L2) 0.247928819718853 34 0.0675447959893332 0.662546342255397 1401 0.210922684004142 1 1 0 -8.03635049290385 LTS-009 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.533 1 NA NA NA NA NA LTS-009 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.462 1 NA 0.861187916044872 5 0.104183971895873 2 2 0 -5.79358266053091 LTS-009 chr12 176140 3409277 3233138 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CACNA2D4) 0.40246861919904 81 0.0689064202602807 1.02440502911729 3488 0.316338861408409 3 2 1 -6.76227510320999 LTS-009 chr12 3409278 3490468 81191 * character(0) NA 0 NA 0.689 1 NA NA NA NA NA LTS-009 chr12 3490469 5155939 1665471 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, PRMT8, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.374517971980994 47 0.0646589501421691 0.855300638948667 1483 0.409469558929265 3 2 1 -6.9407350194573 LTS-009 chr12 5155940 5155961 22 * KCNA5 0 1 NA 3.75 1 NA NA NA NA NA LTS-009 chr12 5155962 6457470 1301509 * c(NTF3, PLEKHG6, ANO2, SCNN1A, TNFRSF1A, VWF, CD9) 0.37855284729501 21 0.0970450803443823 1.22493323614034 818 0.469950893894637 3 2 1 -6.85081597029116 LTS-009 chr12 6457471 6457863 393 * SCNN1A NA 0 NA 0.947 1 NA NA NA NA NA LTS-009 chr12 6457864 7355042 897179 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD27, CLSTN3, NCAPD2) 0.387501203719049 28 0.0920548203359821 1.05050094886212 3224 0.373995238695417 3 2 1 -6.73580567378322 LTS-009 chr12 7355043 9090515 1735473 * c(SLC2A14, A2ML1, CLEC4C, PHC1, NECAP1, CLEC4E, CD163L1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, POU5F1P3, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.369746173120919 41 0.0964997725259546 0.835443242424032 1949 0.350224945490926 2 1 1 -7.04775544967213 LTS-009 chr12 9090516 9093792 3277 * c(PHC1, M6PR) 0.436810470779787 2 0.067175144212722 0.442694087539295 52 0.225717862705845 0 0 0 -6.73627192491481 LTS-009 chr12 9093793 9581759 487967 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.363900014096401 39 0.0584787353072115 0.903022946264683 680 0.359681362880301 3 2 1 -6.86190001160431 LTS-009 chr12 9581760 9717935 136176 * DDX12P 0.44 1 NA 1.68219760060175 114 0.720327583364681 6 6 0 -5.76443424798969 LTS-009 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-009 chr12 9747241 11548488 1801248 * c(SMIM10L1, KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, TAS2R42, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB1, PRB3, PRB4, PRH1, PRH2, CLEC7A, PRB2, KLRC4, YBX3, NA NA NA NA NA NA NA NA NA LTS-009 CD69, CLEC2B) 0.348982613710278 85 0.0758961401497853 0.851776517912897 2108 0.37989229740588 3 2 1 -7.12218432974868 LTS-009 NA NA NA NA LTS-009 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 1.584 1 NA NA NA NA NA LTS-009 chr12 11802940 19282775 7479836 * c(LOC100506314, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, PIK3C2G, PLEKHA5, MANSC1, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, NA NA NA NA NA NA NA NA NA LTS-009 HTR7P1, CAPZA3) 0.386466527805605 78 0.0648422160865357 0.99692076004066 3777 0.372634749226436 3 2 1 -6.75407728569487 LTS-009 NA NA NA NA LTS-009 chr12 19282776 23699443 4416668 * c(LOC100506393, ABCC9, SLCO1B1, AEBP2, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, GOLT1B, PDE3A, SLCO1C1, PLEKHA5, ETNK1, CMAS, RECQL, ST8SIA1, SLCO1A2, SOX5, PYROXD1, SPX, C2CD5) 0.426702557142737 57 0.109782700039989 1.21288373198336 2378 0.528879597276073 4 2 2 -6.74902121625685 LTS-009 chr12 23699444 23716221 16778 * SOX5 NA 0 NA 1.004 1 NA NA NA NA NA LTS-009 chr12 23716222 25359600 1643379 * c(MIR920, LINC00477, ETFRF1, C12orf77, KRAS, LRMP, CASC1, BCAT1, SOX5) 0.388133515495847 12 0.12785562406895 0.884560155927458 610 0.319036032443107 3 2 1 -6.93036746900222 LTS-009 chr12 25359601 32751559 7391959 * c(MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, RASSF8, FGD4, LMNTD1, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, FGFR1OP2, SMCO2, OVCH1, ITPR2, KRAS, REP15, H3F3C, TSPAN11, ERGIC2, TM7SF3, KIAA1551, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, BHLHE41, FLJ13224, SSPN, TMTC1, PPFIBP1, MED21) 0.378887595409499 135 0.0899561480293024 1.05845607906245 4550 0.514611574729308 3 2 1 -6.7579225889903 LTS-009 chr12 32751560 32753298 1739 * FGD4 NA 0 NA 1.548 1 NA NA NA NA NA LTS-009 chr12 32753299 34175508 1422210 * c(DNM1L, FGD4, SYT10, YARS2, PKP2, ALG10) 0.43889541961554 31 0.087061429307807 1.26336613122083 627 0.473382578094061 4 2 2 -6.73349610435362 LTS-009 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 1.02469264264724 59 0.347767227349658 3 NA NA -5.76441027171458 LTS-009 chr12 38710341 38710459 119 * character(0) 0.476 1 NA 1.01599304809643 3 0.10493966520498 3 3 0 -5.76441041150115 LTS-009 chr12 38710460 41323799 2613340 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.450254461722572 63 0.0642418067042221 1.10129203719026 1887 0.435513818725176 4 2 2 -6.88009664122167 LTS-009 chr12 41323800 41327261 3462 * CNTN1 NA 0 NA 2.768 1 NA NA NA NA NA LTS-009 chr12 41327262 41966306 639045 * c(CNTN1, PDZRN4) 0.472975241455589 2 0.0176776695296637 1.23405815951238 226 0.369647066651384 4 2 2 -8.38674614806471 LTS-009 chr12 41966307 42478351 512045 * c(GXYLT1, PDZRN4) 0.235 1 NA 1.22086708285644 99 0.502020356830715 4 4 0 -5.76506530330243 LTS-009 chr12 42478352 42479750 1399 * GXYLT1 0.250822170673258 12 0.0733502907391317 1.6983865680444 41 0.797904784496215 17 13 4 -6.73820796381547 LTS-009 chr12 42479751 42554505 74755 * c(YAF2, GXYLT1) 0.446 1 NA 1.16448926172456 112 0.595379549730093 4 4 0 -5.7650383001272 LTS-009 chr12 42554506 44180633 1626128 * c(YAF2, PRICKLE1, IRAK4, PPHLN1, ADAMTS20, PUS7L, ZCRB1) 0.469326258256708 11 0.0315565869798713 1.23619460136326 709 0.410553177812344 4 2 2 -7.23962130919393 LTS-009 chr12 44180634 52100515 7919882 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, NA NA NA NA NA NA NA NA NA LTS-009 DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, NCKAP5L, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, CCDC65, ENDOU, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23, SLC4A8, DAZAP2) 0.373892975539742 141 0.0764417141593983 0.997672324510779 10020 0.364715055094494 3 2 1 -6.77306661563776 LTS-009 NA NA NA NA LTS-009 chr12 52100516 52115356 14841 * SCN8A NA 0 NA 1.325 1 NA NA NA NA NA LTS-009 chr12 52115357 54859037 2743681 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, SP7, GTSF1, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, ANKRD33, IGFBP6, ITGA5, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, NA NA NA NA NA NA NA NA NA LTS-009 KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LOC400043, FIGNL2, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, KRT76, CSAD, ATP5G2, PFDN5, GPR84, PRR13, CALCOCO1, RARG, C12orf10, ATG101, SCN8A, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ACVR1B, KRT75, ACVRL1, ESPL1) 0.36543014628575 105 0.0669666857201176 1.0709092690879 5945 0.372135960605757 3 2 1 -6.82109985318538 LTS-009 NA NA NA NA LTS-009 chr12 54859038 54864970 5933 * GTSF1 NA 0 NA 0.697 1 NA NA NA NA NA LTS-009 chr12 54864971 56078627 1213657 * c(DCD, MUCL1, OR2AP1, OR10P1, GTSF1, OR10A7, METTL7B, OR6C74, OR6C3, OR6C6, NCKAP1L, OR6C2, OR6C4, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.362349522176145 41 0.0766075125272304 0.745679385071039 1129 0.30616253617954 2 1 1 -7.31441534721188 LTS-009 chr12 56078628 78534243 22455616 * c(LOC100130075, AGAP2-AS1, MIR1279, MIR1228, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, BLOC1S1-RDH5, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, DCTN2, CCT2, AVIL, PTGES3, FRS2, OS9, GLIPR1, CPSF6, KRR1, BAZ2A, WIF1, IRAK3, NXPH4, XPOT, GPR182, MBD6, OSBPL8, ARHGEF25, C12orf56, AGAP2, RAB3IP, SDR9C7, LRIG3, TPH2, CPM, MYL6B, CS, GLIPR1L2, BEST3, E2F7, NA NA NA NA NA NA NA NA NA LTS-009 C12orf66, CSRP2, CYP27B1, DGKA, DDIT3, DTX3, ZFC3H1, RPSAP52, ERBB3, PHLDA1, R3HDM2, RAB21, MON2, NEMP1, TBC1D30, ESYT1, ZDHHC17, GRIP1, LEMD3, STAC3, MSRB3, GLIPR1L1, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, KCNMB4, GLI1, GNS, RASSF3, ANKRD52, SLC39A5, SPRYD4, TRHDE-AS1, LINC01465, DPY19L2, ORMDL2, TBK1, TRHDE, APOF, FAM19A2, IFNG, INHBC, ITGA7, KCNC2, LRRC10, KIF5A, FLJ41278, LRP1, MIRLET7I, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 LYZ, MIR26A2, MARS, MDM2, METTL1, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, NAP1L1, CNOT2, PA2G4, ATP5B, IL22, IL23A, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, PRIM1, IL26, CAND1, MDM1, NDUFA4L2, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAB5B, RAP1B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, TBC1D15, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, MIR548C, TSPAN8, MRS2P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 NABP2, BBS10, PIP4K2C, YEATS4, HMGA2, THAP2, INHBE, LLPH, PYM1, SARNP, DYRK2, CAPS2, ZC3H10, DNAJC14, LGR5, RDH16, HSD17B6, TIMELESS, NAV3, ATP23, SLC16A7, HELB, MARCH9, COQ10A, CD63, ZBTB39, PAN2, USP15) 0.361128321369496 279 0.0908045697916779 0.9852893110813 17699 0.362662400348885 3 2 1 -6.92107924875479 LTS-009 NA NA NA NA LTS-009 chr12 78534244 78537068 2825 * NAV3 NA 0 NA 1.459 1 NA NA NA NA NA LTS-009 chr12 78537069 93793115 15256047 * c(MIR1252, POC1B-GALNT4, MIR4699, MIR548AL, KERA, NUDT4, TSPAN19, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, MGAT4C, POC1B, OTOGL, CCDC59, LINC00936, C12orf74, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, ATP2B1, NTS, PAWR, SLC6A15, CLLU1OS, CLLU1, LOC643339, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, CEP290, ALX1, EEA1, LRRIQ1, METTL25, PPFIA2, GALNT4, LIN7A, NA NA NA NA NA NA NA NA NA LTS-009 NAV3, C12orf29, RASSF9) 0.385626980952995 62 0.0616150602782599 1.04882458513202 4803 0.428328918163589 3 2 1 -6.76505836462862 LTS-009 NA NA NA NA LTS-009 chr12 93793116 93795578 2463 * NUDT4 0.313 1 NA 0.725002444722909 55 0.377173095683857 2 2 0 -5.76450042693848 LTS-009 chr12 93795579 119419583 25624005 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, MIR4472-2, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, METAP2, SDS, PRDM4, PWP1, FICD, NUDT4, SDSL, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, NA NA NA NA NA NA NA NA NA LTS-009 KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, DAO, DTX1, PLBD2, FAM71C, RMST, ELK3, ALDH2, RPH3A, FBXO21, UHRF1BP1L, CUX2, KIAA1033, MED13L, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, TBX5-AS1, FBXW8, UTP20, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, TMEM119, IGF1, C12orf42, C12orf75, CFAP73, ARL1, C12orf76, LTA4H, MIR135A2, ASCL1, MIR331, MVK, MYBPC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 MYL2, NFYB, NOS1, ATP2A2, OAS1, EID3, OAS2, OAS3, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, TAOK3, ANAPC7, NT5DC3, VPS29, SLC25A3, TPCN1, PMCH, SSH1, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, ANKS1B, CHPT1, TMCC3, PTPN11, NTN4, TRPV4, RFC5, RFX4, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 LOC643711, LOC643770, SUDS3, ACTR6, SNRPF, SNORA53, TBX5, TBX3, MIR620, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, TCHP, HVCN1, RASAL1, SRRM4, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, CRADD, HRK, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, WSCD2, SART3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 GIT2, NUAK1, RBM19, NR1H4) 0.374262473635287 398 0.0776792463530345 0.97531161794736 21370 0.458423854809625 3 2 1 -6.90991279745209 LTS-009 NA NA NA NA LTS-009 chr12 119419584 120106003 686420 * c(LINC00934, CCDC60, HSPB8, TMEM233, PRKAB1, SRRM4) 0.381351326021249 5 0.062142577996089 0.734276476415828 440 0.212563226363134 2 1 1 -7.26929394070227 LTS-009 chr12 120106004 120106087 84 * PRKAB1 NA 0 NA 1.012 1 NA NA NA NA NA LTS-009 chr12 120106088 124800592 4694505 * c(MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR4498, MIR4700, MPHOSPH9, CAMKK2, TMED2, GCN1, RAB35, SNRNP35, CIT, SPPL3, COX6A1, RFLNA, ZNF664, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, NA NA NA NA NA NA NA NA NA LTS-009 TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, PRKAB1, DIABLO, PSMD9, PITPNM2, DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CCDC92, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.366744655592998 165 0.0697808770768693 0.987861141229689 8271 0.3349306273999 3 2 1 -6.81429453666873 LTS-009 NA NA NA NA LTS-009 chr12 124800593 124808944 8352 * character(0) NA 0 NA 1.558 1 NA NA NA NA NA LTS-009 chr12 124808945 125470857 661913 * c(MIR5188, DHX37, UBC, SCARB1, NCOR2) 0.373280513617198 26 0.0567710652194747 1.22873262345363 653 0.370401114655869 3 2 1 -6.86503133336367 LTS-009 chr12 125470858 125473353 2496 * DHX37 NA 0 NA 0.99 1 NA NA NA NA NA LTS-009 chr12 125473354 129278440 3805087 * c(LOC100128554, MIR3612, LINC00943, LINC00507, TMEM132B, SLC15A4, BRI3BP, LINC00944, LINC00939, FLJ37505, LOC440117, DHX37, AACS, TMEM132C) 0.378409664305818 38 0.0780436149351626 0.900606498038618 790 0.351425893532301 3 2 1 -7.02544363104773 LTS-009 chr12 129278441 131275253 1996813 * c(LOC100190940, FZD10, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, FZD10-AS1, PIWIL1) 0.372122675299744 21 0.113088081979112 0.74602751114817 767 0.282973329614885 2 1 1 -6.99825620292579 LTS-009 chr12 131275254 133425336 2150083 * c(LOC100130238, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.39536022041809 57 0.0712232317917909 1.02549349960792 2688 0.411470396998913 3 2 1 -6.74088964011225 LTS-009 chr12 133425337 133428102 2766 * CHFR NA 0 NA 0.634 1 NA NA NA NA NA LTS-009 chr12 133428103 133808129 380027 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.432582471155584 34 0.0435710025569141 0.653363745304357 944 0.221378399834911 2 1 1 -6.92219681531644 LTS-009 chr12 133808130 133812708 4579 * ANHX NA 0 NA 0.598302241389028 43 0.132674832940091 1 NA NA -5.76480246531246 LTS-009 chr13 19271620 19747991 476372 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.264 1 NA 0.810039463924346 13 0.363409195796892 2 2 0 -5.76508486063483 LTS-009 chr13 19747992 20577316 829325 * c(ANKRD26P3, LINC00421, MPHOSPH8, PSPC1, TUBA3C, ZMYM2, ZMYM5, TPTE2) 0.205574927158043 17 0.0621404954636716 0.636763052405699 421 0.356772267780965 2 2 0 -6.93527277884215 LTS-009 chr13 20577317 20579172 1856 * ZMYM2 NA 0 NA 1.048 1 NA NA NA NA NA LTS-009 chr13 20579173 24167505 3588333 * c(SACS-AS1, LINC00327, MIR4499, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, CRYL1, IL17D, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88) 0.212665925922043 21 0.0508984048772417 0.80570601578764 1779 0.287963506109427 2 2 0 -6.73823606369434 LTS-009 chr13 24167506 24167559 54 * TNFRSF19 NA 0 NA 1.057 1 NA NA NA NA NA LTS-009 chr13 24167560 24463556 295997 * c(MIPEP, C1QTNF9B-AS1, TNFRSF19) 0.19796693765652 7 0.0439068277584424 1.1505788121205 242 0.34633786560181 2 2 0 -7.0169165289857 LTS-009 chr13 24463557 24465199 1643 * c(MIPEP, C1QTNF9B-AS1) NA 0 NA 0.403 1 NA NA NA NA NA LTS-009 chr13 24465200 24471092 5893 * c(C1QTNF9B, C1QTNF9B-AS1) 0.194 1 NA 0.425310664980818 47 0.217501256283122 0 0 0 -5.76793882241606 LTS-009 chr13 24471093 25525488 1054396 * c(MIR2276, SPATA13-AS1, PARP4, SPATA13, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, ATP12A, CENPJ, RNF17, TPTE2P1) 0.155615941608275 25 0.0682349372877756 0.935562270066862 887 0.48776039264236 3 3 0 -6.77168956039179 LTS-009 chr13 25525489 25670851 145363 * c(PABPC3, TPTE2P1) 0.495 1 NA 0.648457975585573 47 0.302745384452985 1 1 0 -5.78060800547229 LTS-009 chr13 25670852 25671292 441 * PABPC3 0.431351619039887 15 0.0254889331727657 1.43109163029297 31 0.575894520658715 18 10 8 -6.73419554851226 LTS-009 chr13 25671293 25672172 880 * PABPC3 0.261 1 NA 1.00134487384882 15 0.683973774211792 3 3 0 -5.76441063583271 LTS-009 chr13 25672173 25673393 1221 * PABPC3 0.237113614069233 3 0.0383536178215302 1.13832445461989 26 0.561715883562281 10 8 2 -6.7366641793976 LTS-009 chr13 25673394 25715647 42254 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-009 chr13 25715648 25740142 24495 * character(0) 0.136540118031805 2 0.202939646200539 0.55212396893387 88 0.380540993525528 3 3 0 -6.78513132378178 LTS-009 chr13 25740143 29608324 3868182 * c(PAN3-AS1, CDK8, CDX2, WASF3, AMER2, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, MTUS2, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, PDX1, RASL11A, SHISA2, ATP5EP2, POLR1D, POMP, ATP8A2, RNF6, RPL21, SNORA27, URAD, MTMR6, NUP58) 0.185631140125012 38 0.0507302084960633 0.89561172615675 2668 0.360090677441257 3 3 0 -7.10966618870753 LTS-009 chr13 29608325 29674881 66557 * MTUS2 NA 0 NA 1.439 1 NA NA NA NA NA LTS-009 chr13 29674882 103331512 73656631 * c(LINC00462, FKSG29, LINC00426, TPT1-AS1, UBAC2-AS1, MIR1297, MIR548F5, MIR759, MIR320D1, MIR4306, MIR3170, MIR4305, MIR3169, MINOS1P1, MIR3665, MIR3613, RBM26-AS1, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, MIR2681, MIR548AN, MIR4500, MIR4705, MIR4703, TPTE2P5, GPC6, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, GPC5-AS1, GPC6-AS2, LINC00297, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, NA NA NA NA NA NA NA NA NA LTS-009 MTUS2-AS1, LINC00331, LINC00332, LINC00333, LINC00351, LINC00353, LINC00366, LINC00379, LINC00381, LINC00398, LINC00423, LINC00433, LINC00446, LINC00457, LINC00559, LINC00571, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, STARD13-AS, RNASEH2B-AS1, SMIM2-IT1, PCCA-AS1, NALCN-AS1, LINC00348, MRPS31P5, LINC00359, FRY, MBNL2, FARP1, LPAR6, SLC25A15, LHFP, TRIM13, USPL1, MRPS31, SPRY2, ABCC4, DLEU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 N4BP2L2, PIBF1, OLFM4, POSTN, HSPH1, SUGT1, RCBTB2, LECT1, SOX21, WBP4, AKAP11, KLF12, EXOSC8, SLITRK1, KCTD12, ARL11, WDFY2, N4BP2L2-IT2, CLN5, LINC00284, CSNK1A1L, RXFP2, TEX26, SLAIN1, CPB2, RNF113B, LINC00410, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, B3GLCT, DACH1, DGKH, CCDC122, GPR180, STOML3, DCT, COMMD6, CLYBL, GPR183, EDNRB, EEF1DP3, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CTAGE10P, FGF14, GPC5, FNDC3A, DZIP1, DIS3, PDS5B, MYCBP2, VWA8, FOXO1, ZC3H13, SPG20, LRCH1, MTUS2, DOCK9, TGDS, ALOX5AP, SLC25A30, NALCN, SLITRK5, FBXL3, INTS6, CKAP2, HS6ST3, NUFIP1, NBEA, OXGR1, PCDH17, FGF14-IT1, FGF14-AS2, OR7E156P, SUGT1P3, SIAH3, KCNRG, LINC00282, GPR18, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, ALG5, HMGB1, HTR2A, UBAC2, LINC00550, LINC00347, FREM2, NEK5, KPNA3, IPO5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 KCTD4, NHLRC3, SERP2, LCP1, SERTM1, LINC00547, LINC00548, LMO7, MIR16-1, MIR19B1, MIR17HG, SMAD9, LINC00544, ALG11, MZT1, NEK3, PCCA, PCDH8, PCDH9, VPS36, PHF11, UFM1, ATP7B, UBL3, POU4F1, NDFIP2, SOHLH2, ENOX1, RCBTB1, NUDT15, GPALPP1, SUPT20H, UGGT2, THSD1, DNAJC3, CYSLTR2, SPRYD7, COG6, KLHL1, RAP2A, RB1, RFC3, RFXAP, ATXN8OS, RBM26, TSC22D1-AS1, MIR4500HG, ZAR1L, LINC00598, LINC00371, SERPINE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CTAGE11P, PCDH20, SLC7A1, SLC15A1, BRCA2, SNORA31, KLF5, BTF3P11, MIR621, MIR622, MIR623, TPP2, TPT1, TRPC4, CCDC169, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, RNF219, NAA16, RNASEH2B, DHRS12, BORA, RUBCNL, PROSER1, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KATNAL1, KBTBD7, SLITRK6, STK24, EBPL, TMTC4, MEDAG, ZIC5, TNFSF11, GGACT, SCEL, SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 STARD13, N4BP2L1, CLDN10, DCLK1, ITGBL1, KL, TM9SF2, EPSTI1, ITM2B, MTRF1, UTP14C, TBC1D4) 0.171885045442835 396 0.0532690334487315 1.02675548957739 20823 0.431710659806134 3 3 0 -6.74114410206126 LTS-009 NA NA NA NA LTS-009 chr13 103331513 103338122 6610 * c(METTL21C, TPP2) NA 0 NA 0.724 1 NA NA NA NA NA LTS-009 chr13 103338123 103443821 105699 * c(METTL21C, CCDC168, KDELC1, TEX30) 0.181800162575355 18 0.0348154799917913 0.738500532895445 577 0.20376306583708 3 3 0 -6.9925005883352 LTS-009 chr13 103443822 103444308 487 * KDELC1 NA 0 NA 1.123 1 NA NA NA NA NA LTS-009 chr13 103444309 111992219 8547911 * c(BIVM-ERCC5, MIR548AS, LINC00443, COL4A2-AS1, MYO16-AS1, TNFSF13B, TEX29, METTL21EP, COL4A1, COL4A2, LINC00343, EFNB2, ERCC5, MYO16, DAOA, DAOA-AS1, LINC00551, LINC00346, ING1, LIG4, BIVM, ARGLU1, ANKRD10, RAB20, NAXD, SLC10A2, LINC00460, FAM155A, KDELC1, CARS2, ABHD13, IRS2, ARHGEF7) 0.176757291636804 61 0.0607126664613939 1.09293874384829 2616 0.439929711658743 3 3 0 -6.86219881341092 LTS-009 chr13 111992220 113813023 1820804 * c(MCF2L-AS1, TUBGCP3, TEX29, SPACA7, F7, F10, ATP11A, MCF2L, ATP11AUN, SOX1, PROZ) 0.21025414714102 27 0.0411227056876967 0.893999312298525 1073 0.376159114381472 2 2 0 -6.84370246536388 LTS-009 chr13 113813024 114623880 810857 * c(LINC00552, GAS6-AS2, ADPRHL1, GAS6, TMEM255B, LAMP1, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, TFDP1, GRTP1, CUL4A, PROZ) 0.179088845573462 21 0.0305939614334345 1.07694817552209 975 0.365834374593307 3 3 0 -6.82997388463439 LTS-009 chr13 114623881 115071323 447443 * c(LINC00565, RASA3, UPF3A, CDC16) NA 0 NA 1.0315259628639 299 0.304506373590261 3 NA NA -5.76462479151937 LTS-009 chr13 115071324 115089243 17920 * CHAMP1 NA 0 NA 0.596 1 NA NA NA NA NA LTS-009 chr13 115089244 115092817 3574 * CHAMP1 NA 0 NA 0.721431418930468 75 0.214554449713568 2 NA NA -5.76485907898206 LTS-009 chr14 19434116 20216298 782183 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0.263 1 NA 0.584767403006615 35 0.188662007148171 1 1 0 -5.77419348839467 LTS-009 chr14 20216299 20754917 538619 * c(OR4K14, OR4L1, OR11H6, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4Q3, OR4M1, OR4K5, OR4K1, OR4K15) 0.206953769657534 31 0.0370392120030442 0.56260929092223 467 0.828707366334801 2 2 0 -6.81744367010607 LTS-009 chr14 20754918 21109859 354942 * c(SNORD126, PARP2, RNASE11, KLHL33, APEX1, RNASE10, OR6S1, RNASE9, PNP, RNASE12, OSGEP, CCNB1IP1, TEP1, RPPH1, TMEM55B, TTC5) 0.201935109488043 48 0.0408673201300248 0.740730503853576 1064 0.273173759225777 2 2 0 -6.80860216794033 LTS-009 chr14 21109860 21238318 128459 * c(EDDM3A, ANG, RNASE4, EDDM3B) 0.404 1 NA 0.859813072212233 72 0.240726203084189 2 2 0 -5.77234492856306 LTS-009 chr14 21238319 21526656 288338 * c(TPPP2, RNASE8, SLC39A2, RNASE13, NDRG2, RNASE1, RNASE2, RNASE3, RNASE6, EDDM3B, ECRP, METTL17, RNASE7) 0.399199693811291 5 0.0464187462131411 0.829562132298719 446 0.307376311819188 3 2 1 -6.85179320211487 LTS-009 chr14 21526657 21538478 11822 * NDRG2 NA 0 NA 0.958 1 NA NA NA NA NA LTS-009 chr14 21538479 22466017 927539 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, SALL2, TMEM253, SNORD9, RAB2B, TOX4) 0.430633147061439 27 0.0569896776778336 1.09349319880628 1693 0.373287657230639 4 2 2 -6.81640321743177 LTS-009 chr14 22466018 22509188 43171 * character(0) 0.244 1 NA 1.10423449493171 55 0.347431595864155 3 3 0 -5.76567301505577 LTS-009 chr14 22509189 23020922 511734 * character(0) 0.241358868819 22 0.0428177705148396 1.04583482306902 746 0.347091630008771 2 2 0 -7.13622831929208 LTS-009 chr14 23020923 57881206 34860284 * c(SNORD127, MIR208B, KTN1-AS1, SLC25A21-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR4307, MIR548Y, LINC00645, LOC100506071, LINC00871, LINC00648, NA, NEDD8-MDP1, BCL2L2-PABPN1, MIR4503, MIR548AI, MIR4707, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, DHRS2, EFS, CDKN3, IRF9, PRMT5, SEC23A, CEBPE, TM9SF1, EXOC5, CGRRF1, CFL2, DHRS4, FERMT2, RIPK3, AP4S1, WDHD1, BAZ1A, MAP4K5, EGLN3, DTD2, TRIM9, DHRS1, CMTM5, NA NA NA NA NA NA NA NA NA LTS-009 NA, CMA1, C14orf28, TRAPPC6B, MRPL52, PSMB11, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, LTB4R, RPL10L, MIPOL1, FRMD6-AS1, ABHD12B, MDP1, LRFN5, CTSG, DAD1, CLEC14A, FITM1, REM2, MDGA2, NOP9, COCH, SPTSSA, ADCY4, LINC01599, NID2, ATG14, FKBP3, FOXG1, ACIN1, SAMD4A, FAM179B, SCFD1, KHNYN, SLC7A8, KLHDC2, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NGDN, LRP10, NKX2-8, TINF2, GCH1, ATP5S, CIDEB, GMFB, IGBP1P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 LINC00639, LINC01588, LINC00640, GPR137C, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, ERO1A, GZMB, FOXA1, DHRS4L2, ARF6, TBPL2, LINC01551, KTN1, ARHGAP5, LGALS3, MIR208A, MGAT2, MIA2, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OTX2, OXA1L, PAX9, EMC9, PCK2, ATL1, NIN, GMPR2, SLC22A17, MBIP, C14orf166, PNN, POLE2, GNG2, KLHL28, TMEM260, HAUS4, PPP2R3C, PRPF39, C14orf119, FBXO34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 RNF31, RBM23, DNAAF2, MIS18BP1, DHRS4-AS1, G2E3, AP5M1, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSMC6, PELI2, PSME1, PSME2, PTGDR, PTGER2, NYNRIN, TXNDC16, HOMEZ, FANCM, PYGL, SNX6, RABGGTA, BCL2L2, SAV1, C14orf93, RPL36AL, RPS29, ABHD4, NPAS3, CBLN3, CDH24, RPL13AP3, LINC00520, IL25, GNPNAT1, BMP4, SOS2, SRP54, SSTR1, STYX, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, VCPKMT, IPO4, L2HGDH, NUBPL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 DCAF11, DDHD1, PABPN1, TMX1, FSCB, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, GEMIN2, AJUBA, ZFHX2, CDKL1, AP1G2, SLC25A21, SLC7A7, CARMIL3, PPP1R3E, NEMF, MAPK1IP1L, CPNE6, AKAP6, KIAA0391, DLGAP5, REC8) 0.219027043835915 319 0.0730389821140934 0.796154875933216 19731 0.33197996138101 2 2 0 -6.7348594778332 LTS-009 NA NA NA NA LTS-009 chr14 57881207 58606161 724955 * c(C14orf37, SLC35F4, C14orf105) 0.216701208902302 14 0.0602040942713448 0.63870762334277 341 0.269678321047864 2 2 0 -7.00979436179083 LTS-009 chr14 58606162 58666885 60724 * c(C14orf37, ACTR10) NA 0 NA 1.043 1 NA NA NA NA NA LTS-009 chr14 58666886 60865119 2198234 * c(L3HYPDH, C14orf37, DAAM1, TIMM9, LRRC9, PSMA3-AS1, TOMM20L, DACT1, JKAMP, DHRS7, PPM1A, ACTR10, PSMA3, ARID4A, RTN1, PCNX4, GPR135, CCDC175, KIAA0586) 0.209020831148833 23 0.0600560344405729 0.81132303034897 1849 0.380699289526283 2 2 0 -6.74238117849307 LTS-009 chr14 60865120 60867038 1919 * character(0) 0.169 1 NA 0.353306435114548 46 0.123000074623912 0 0 0 -5.76448744497852 LTS-009 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.747 1 NA NA NA NA NA LTS-009 chr14 60899979 66480287 5580309 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, WDR89, GPHB5, PPP1R36, SLC38A6, TMEM30B, ESR2, ZBTB1, SYNE2, FNTB, FUT8, PLEKHG3, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, RAB15, FLJ22447, MAX, MNAT1, TEX21P, MTHFD1, SIX6, SIX4, PPP2R5E, PRKCH, RHOJ, TRMT5, FUT8-AS1, LINC00643, SIX1, SNAPC1, SPTB, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5) 0.211794463807479 85 0.0514485628744743 0.793665547919164 4214 0.343220035319794 2 2 0 -6.73560634429197 LTS-009 chr14 66480288 66974112 493825 * LINC00238 0.401 1 NA 1.06859656726181 16 0.343386704994044 3 3 0 -5.76925276915363 LTS-009 chr14 66974113 68273430 1299318 * c(GPHN, VTI1B, RDH12, FAM71D, TMEM229B, EIF2S1, ZFYVE26, PLEK2, ARG2, RDH11, ATP6V1D, PIGH, PLEKHH1, MPP5) 0.386761930128838 30 0.0491795794459729 0.967172501519692 1502 0.343693099282151 3 2 1 -6.75356897577527 LTS-009 chr14 68273431 70243180 1969750 * c(LOC100289511, ACTN1-AS1, ERH, ZFYVE26, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, RAD51B, SRSF5, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.388002165793371 13 0.0559964513527649 1.15943308943064 1255 0.494846417384615 3 2 1 -6.80821546108638 LTS-009 chr14 70243181 70244995 1815 * SLC10A1 NA 0 NA 0.875 1 NA NA NA NA NA LTS-009 chr14 70244996 70883766 638771 * c(SYNJ2BP-COX16, ADAM21P1, COX16, SYNJ2BP, SMOC1, SLC8A3, SLC10A1) 0.343838488117593 15 0.113953290347196 0.918539810690539 467 0.430259246424868 3 2 1 -6.8425865866445 LTS-009 chr14 70883767 70924201 40435 * c(SYNJ2BP-COX16, SYNJ2BP, ADAM21) NA 0 NA 0.173 1 NA NA NA NA NA LTS-009 chr14 70924202 70926280 2079 * ADAM21 NA 0 NA 0.52913823645325 55 0.287357117766923 1 NA NA -5.76448994308395 LTS-009 chr14 70926281 73989983 3063703 * c(MED6, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, MAP3K9, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, ADAM21, ADAM20, PAPLN, RGS6) 0.36297394691728 42 0.0987946667531289 0.985761493857721 2299 0.336277972880508 3 2 1 -6.79088739019875 LTS-009 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.363 1 NA NA NA NA NA LTS-009 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.326435006241783 43 0.164603439693112 0 NA NA -5.76526671125248 LTS-009 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.802 1 NA NA NA NA NA LTS-009 chr14 74035793 74947070 911278 * c(MIR4505, MIR4709, NPC2, ACOT2, ACOT4, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, ACOT1, ACOT6, SYNDIG1L, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.399918096452146 55 0.05217895263076 0.911176042785214 1661 0.494911872998389 3 2 1 -6.79788837439218 LTS-009 chr14 74947071 75052774 105704 * c(NPC2, ISCA2, LTBP2) 0.423441642725108 7 0.047588514020367 1.21775418520318 340 0.326286441245132 5 3 2 -6.76893563095721 LTS-009 chr14 75052775 75070238 17464 * LTBP2 NA 0 NA 0.793 1 NA NA NA NA NA LTS-009 chr14 75070239 101034278 25964040 * c(SNORA11B, LOC100129345, MIR1260A, MIR3173, TUNAR, DIO2-AS1, MIR5698, LINC00911, FBLN5, BATF, AHSA1, CYP46A1, PAPOLA, TMED10, PTPN21, FOXN3, CHGA, C14orf1, IFT43, SERPINA3, AK7, IFI27L1, NOXRED1, JDP2, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, GSC, SERPINA12, PRIMA1, LRRC74A, ISM2, CEP128, TTC7B, SYNE3, SAMD15, EML5, DIO2, DLST, EML1, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, DICER1, FOS, FLRT2, LINC00521, NA NA NA NA NA NA NA NA NA LTS-009 SERPINA11, GALC, TMEM251, TCL6, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, CCDC85C, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, FOXN3-AS1, LINC00642, DICER1-AS1, LTBP2, ATXN3, CCDC88C, MIR345, NDUFB1, SERPINA5, FCF1, SERPINA10, GLRX5, EVL, GSKIP, ASB2, PGF, SERPINA1, SERPINA4, CPSF2, KCNK10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 NRDE2, ATG2B, UBR7, FLVCR2, GPATCH2L, PPP4R3A, BTBD7, TDP1, SPATA7, YLPM1, LGMN, KCNK13, C14orf132, PSMC1, DDX24, ADCK1, TMEM63C, UNC79, BEGAIN, PPP4R4, NGB, BDKRB1, BDKRB2, VIPAS39, SEL1L, MOAP1, IRF2BPL, BCL11B, SNORA79, TGFB3, TSHR, LINC01220, VRK1, WARS, YY1, OTUB2, WDR25, LINC00341, ZC2HC1C, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, TCL1A, SLIRP, RPS6KL1, IFI27L2, SETD3, HHIPL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 GON7, GPR65, STON2, CIPC, SERPINA6, CCNK, ALKBH1, EIF2B2, FAM181A, EFCAB11, NEK9, RPS6KA5, TRIP11, NRXN3, SPTLC2, TCL1B, ACYP1, AREL1, GOLGA5) 0.384751855262314 364 0.0764513551081855 0.994248264027176 16484 0.401458575881458 3 2 1 -6.80954433815769 LTS-009 NA NA NA NA LTS-009 chr14 101034279 102198832 1164554 * c(MIR300, MIR541, MIR665, MIR543, MIR889, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MEG9, MIR2392, LINC00239, DIO3, LINC00523, RTL1, MIR127, MIR134, MIR136, MIR154, MIR299, MIR323A, MIR337, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, MEG3, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MIR487A, NA NA NA NA NA NA NA NA NA LTS-009 MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, MIR656, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, MEG8, DLK1) 0.347240353060408 4 0.0533260411681447 0.853426872237806 665 0.272454867690013 3 2 1 -7.34612899133875 LTS-009 NA NA NA NA LTS-009 chr14 102198833 102228222 29390 * c(LINC00239, PPP2R5C) NA 0 NA 1.165 1 NA NA NA NA NA LTS-009 chr14 102228223 104578455 2350233 * c(LINC00605, MIR4309, CKB, TRMT61A, TDRD9, ANKRD9, LINC00637, DYNC1H1, EIF5, RCOR1, PPP1R13B, HSP90AA1, ASPG, KLC1, MARK3, CINP, PPP2R5C, ZNF839, MOK, RD3L, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, AMN, APOPT1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TECPR2) 0.380434811192053 84 0.0689154851296014 1.05635925379834 3665 0.44680978676936 3 2 1 -6.74626812140212 LTS-009 chr14 104578456 104578818 363 * ASPG NA 0 NA 0.769 1 NA NA NA NA NA LTS-009 chr14 104578819 105147594 568776 * c(MIR203B, MIR4710, KIF26A, ASPG, TMEM179, C14orf180, MIR203A) 0.37255264547734 5 0.0759749958868048 0.795722321312953 349 0.24155541600923 3 2 1 -7.10271629755076 LTS-009 chr14 105147595 106235638 1088044 * c(ZBTB42, SIVA1, AHNAK2, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00638, ELK2AP, AKT1, PACS2, NUDT14, CEP170B, C14orf80, BRF1, GPR132, JAG2, CDCA4, INF2, TEX22, TMEM121, BTBD6, MTA1) 0.371951797689107 63 0.0494507828888018 1.03510972223001 2555 0.349568106462578 3 2 1 -6.79056380334062 LTS-009 chr14 106235639 106235891 253 * character(0) NA 0 NA 0.53 1 NA NA NA NA NA LTS-009 chr14 106235892 106552488 316597 * c(ADAM6, FAM30A) 0.363984748451085 16 0.117535172040826 0.67590096597563 334 0.312352096001911 1 1 0 -6.95938960217065 LTS-009 chr14 106552489 106552608 120 * character(0) NA 0 NA 0.771 1 NA NA NA NA NA LTS-009 chr14 106552609 107113858 561250 * c(LINC00226, LINC00221) 0.369500483079423 32 0.0863704453539818 0.983416992752139 226 0.464945972945365 3 2 1 -6.76060105716059 LTS-009 chr14 107113859 107283157 169299 * character(0) NA 0 NA 0.692446264361488 71 0.230103511830962 2 NA NA -5.80135247500616 LTS-009 chr15 20169987 20170011 25 * character(0) 0.385 1 NA 1.38 1 NA NA NA NA NA LTS-009 chr15 20170012 22332914 2162903 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.319948666316052 14 0.124190831535032 0.677872017764141 172 0.463596037228225 1 1 0 -6.92691007912724 LTS-009 chr15 22332915 22414388 81474 * c(OR4N4, OR4M2, OR4N3P, LOC727924) NA 0 NA 0.436528799408162 75 0.250324151653213 0 NA NA -5.81027433517018 LTS-009 chr15 22414389 22414400 12 * OR4N3P NA 0 NA 0.631 1 NA NA NA NA NA LTS-009 chr15 22414401 23888993 1474593 * c(HERC2P7, GOLGA8DP, MIR4508, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, MAGEL2, REREP3, GOLGA8S, MKRN3, NIPA2) 0.370603976388801 23 0.0905762622795705 0.918945674768784 822 0.392930951427568 3 2 1 -6.81803460560032 LTS-009 chr15 23888994 25583683 1694690 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-009 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, UBE3A, PWRN1, PWRN2, PWAR5, SNURF) 0.36865903274499 8 0.0700549529196289 0.705469282854223 669 0.247976422505657 2 1 1 -7.51647919901757 LTS-009 NA NA NA NA LTS-009 chr15 25583684 25583922 239 * UBE3A NA 0 NA 1.687 1 NA NA NA NA NA LTS-009 chr15 25583923 26107985 524063 * c(MIR4715, ATP10A, UBE3A) 0.386327043191197 11 0.0492695738675596 1.12067193002512 289 0.33799547778438 3 2 1 -6.75618821818995 LTS-009 chr15 26107986 28090272 1982287 * c(LOC100128714, GABRA5, GABRB3, GABRG3, OCA2, LINC00929, ATP10A) 0.421919482045183 8 0.0534547538979062 0.792139338232836 405 0.300770532651274 2 1 1 -6.79454808473925 LTS-009 chr15 28090273 28096523 6251 * OCA2 NA 0 NA 1.272 1 NA NA NA NA NA LTS-009 chr15 28096524 28566682 470159 * c(OCA2, HERC2) 0.378478012803747 10 0.0673105572039863 1.11454743016907 466 0.415248559596192 3 2 1 -6.75524409762215 LTS-009 chr15 28566683 28632806 66124 * HERC2 NA 0 NA 0.608 1 NA NA NA NA NA LTS-009 chr15 28632807 29053585 420779 * c(LOC100289656, HERC2P9, WHAMMP2, PDCD6IPP2) 0.495 1 NA 0.605594106971206 56 0.425610873051594 1 1 0 -5.76980737263593 LTS-009 chr15 29053586 29060435 6850 * PDCD6IPP2 NA 0 NA 1.272 1 NA NA NA NA NA LTS-009 chr15 29060436 30337572 1277137 * c(FAM189A1, APBA2, NSMCE3, PDCD6IPP2, TJP1, GOLGA6L7P) 0.380995342323641 16 0.0384272039055667 1.01120682821373 613 0.408871547323493 3 2 1 -6.74938096548386 LTS-009 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.199 1 NA NA NA NA NA LTS-009 chr15 30491510 30918558 427049 * c(DKFZP434L187, CHRFAM7A, ARHGAP11B) 0.386 1 NA 0.552105766387108 73 0.389619068636736 1 1 0 -5.76595048275686 LTS-009 chr15 30918559 31947426 1028868 * c(LOC100288637, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.394276595180882 13 0.0484431996233072 0.959552294187006 725 0.424539501898384 3 2 1 -6.75956108221738 LTS-009 chr15 31947427 32464575 517149 * c(CHRNA7, OTUD7A) 0.358165533719304 3 0.0581836173964229 0.666983367239623 120 0.337980954226962 1 1 0 -7.33594814642451 LTS-009 chr15 32464576 32620053 155478 * character(0) NA 0 NA 0.963 1 NA NA NA NA NA LTS-009 chr15 32620054 35377492 2757439 * c(WHAMMP1, MIR1233-2, TMCO5B, LOC100996255, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, GOLGA8B, EMC4, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, GOLGA8O, KATNBL1, AQR, ARHGAP11A, SLC12A6) 0.363927695620139 102 0.0671075944811118 0.966879820691739 2643 0.448096752950246 3 2 1 -6.83036322456736 LTS-009 chr15 35377493 35385374 7882 * character(0) NA 0 NA 2.004 1 NA NA NA NA NA LTS-009 chr15 35385375 37402535 2017161 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, CSNK1A1P1, MEIS2, ANP32AP1, C15orf41, DPH6) 0.347414335641598 6 0.062723732882113 1.21661901793369 391 0.4468073667901 4 3 1 -6.86317443034394 LTS-009 chr15 38228444 43852785 5624342 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR4310, RAD51-AS1, RASGRP1, GPR176, CHP1, CHST14, OIP5, TGM7, PLA2G4E, TMCO5A, ZSCAN29, TTBK2, CDAN1, SPRED1, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, TUBGCP4, FAM98B, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MAP1A, EIF2AK4, NDUFAF1, NUSAP1, NA NA NA NA NA NA NA NA NA LTS-009 SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, HAUS2, RMDN3, DNAJC17, PAK6, KNL1, STARD9, VPS18, RAD51, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, TP53BP1, OIP5-AS1, TYRO3, CHAC1, TMEM62, CAPN3, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, LCMT2) 0.370835698294569 177 0.0768715936522181 1.01336240522317 9792 0.318110159223763 3 2 1 -6.76299971609228 LTS-009 NA NA NA NA LTS-009 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.182 1 NA NA NA NA NA LTS-009 chr15 43873177 44029073 155897 * c(CKMT1B, CATSPER2, STRC, CATSPER2P1, CKMT1A, PPIP5K1) 0.431 1 NA 0.661356492962557 428 0.387727202904936 1 1 0 -5.77844053352362 LTS-009 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 0.885 1 NA NA NA NA NA LTS-009 chr15 44029088 45361255 1332168 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, TERB2, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.391500321503044 4 0.0880832939135831 0.962372065454837 1621 0.375587341986368 3 2 1 -6.75529881819485 LTS-009 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.203 1 NA NA NA NA NA LTS-009 chr15 45365581 45384903 19323 * c(DUOX2, SORD) 0.415 1 NA 0.460334110328074 39 0.367969238284787 1 1 0 -5.76825581579441 LTS-009 chr15 45384904 45384926 23 * DUOX2 NA 0 NA 1.623 1 NA NA NA NA NA LTS-009 chr15 45384927 52879315 7494389 * c(MIR147B, GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, NA, CYP19A1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, SCG3, TMOD3, TMOD2, HDC, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, DUOXA2, MYO5A, DUOX2, MYEF2, DUOX1, TRPM7, FLJ10038, MYO5C, MAPK6, FAM214A, DTWD1, NA NA NA NA NA NA NA NA NA LTS-009 SQRDL, SLC12A1, SLC30A4, SPATA5L1, ATP8B4, SEMA6D, C15orf48, SPPL2A, SHF, DUOXA1, USP8, SLC28A2, COPS2, SECISBP2L) 0.371043026191649 87 0.0805752291264738 0.99922212171453 6759 0.429200633011266 3 2 1 -6.77027339039068 LTS-009 NA NA NA NA LTS-009 chr15 52879316 56689839 3810524 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, WDR72, PYGO1, PRTG, ONECUT1, TEX9, UNC13C, NEDD4, RSL24D1, FAM214A, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.37627019242522 60 0.0750426319512415 0.898946026365556 2062 0.328701324208287 3 2 1 -7.0785742068053 LTS-009 chr15 56689840 56689960 121 * TEX9 NA 0 NA 2.017 1 NA NA NA NA NA LTS-009 chr15 56689961 60297929 3607969 * c(MIR2116, MYZAP, ADAM10, FAM81A, GCOM1, LOC145783, FOXB1, LINC00926, GTF2A2, AQP9, TEX9, LIPC, MYO1E, FAM63B, RNF111, ZNF280D, MNS1, BNIP2, HSP90AB4P, TCF12, SLTM, POLR2M, CGNL1, ALDH1A2, CCNB2, GCNT3, LDHAL6B) 0.386530181304245 44 0.0579842692088734 1.01370064732299 2540 0.340097471411148 3 2 1 -6.73457377603676 LTS-009 chr15 60297930 63353991 3056062 * c(C2CD4A, MGC15885, FOXB1, ANXA2, C2CD4B, MIR190A, VPS13C, RORA, TPM1, ICE2, TLN2) 0.39316317259965 32 0.0610419937420134 1.15451469660977 1755 0.449482910412925 3 2 1 -6.86923727098825 LTS-009 chr15 63353992 63354347 356 * TPM1 NA 0 NA 0.899 1 NA NA NA NA NA LTS-009 chr15 63354348 66783116 3428769 * c(USP3-AS1, MIR1272, MIR4311, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, ZNF609, DAPK2, FBXL22, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, PPIB, DPP8, PARP16, TIPIN, MAP2K1, IGDCC4, SNX1, SCARNA14, TPM1, CA12, SNX22, PIF1, PLEKHO2, VWA9, APH1B, FAM96A, MEGF11, CILP, RAB11A, HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101, USP3) 0.387865107294843 70 0.0688103960198899 1.00713988332186 4699 0.346548868029309 3 2 1 -6.73709507414577 LTS-009 chr15 66783117 66783205 89 * c(SNAPC5, MAP2K1) NA 0 NA 0.946 1 NA NA NA NA NA LTS-009 chr15 66783206 78386608 11603403 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, MIR4313, IQCH-AS1, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, FEM1B, SNAPC5, HMG20A, CORO2B, ARID3B, CLK3, SENP8, HIGD2B, TMEM266, CSK, DRAIC, C15orf61, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, LCTL, ETFA, ITGA11, TBC1D2B, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, NA NA NA NA NA NA NA NA NA LTS-009 LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, SCAPER, PKM, PML, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZWILCH, UACA, IMP3, LARP6, GOLGA6B, MAP2K1, MAP2K5, C15orf39, THAP10, PARP6, FAM219B, ISLR2, PTPN9, BBS4, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, PPCDC, CELF6, RPL4, RPLP1, STRA6, LOC645752, SH2D7, IQCH, ISL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 GOLGA6C, GOLGA6D, FBXO22-AS1, MIR629, MIR630, MIR631, TLE3, LOC729739, TYRO3P, NOX5, NEIL1, AAGAB, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, CD276, ANP32A, LINC00597, ADPGK, SEMA7A, LINGO1, UBL7, PIAS1, PSTPIP1, LOC91450, CALML4, UBE2Q2, COX5A, STOML1, KIF23) 0.383831476769928 190 0.0577721197666626 1.07823424159861 10435 0.407067933714034 3 2 1 -6.85042153119332 LTS-009 NA NA NA NA LTS-009 chr15 78386609 78390229 3621 * SH2D7 NA 0 NA 0.831 1 NA NA NA NA NA LTS-009 chr15 78390230 79048626 658397 * c(CIB2, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, ACSBG1, IDH3A, IREB2, DNAJA4, PSMA4, SH2D7, LOC646938, WDR61) 0.386443957622884 23 0.047066347922049 0.91957874400697 1122 0.325801828941486 3 2 1 -6.77493461917634 LTS-009 chr15 79048627 79048732 106 * character(0) NA 0 NA 1.14 1 NA NA NA NA NA LTS-009 chr15 79048733 82564174 3515442 * c(ST20-MTHFS, MIR4514, MTHFS, MORF4L1, ADAMTS7, CTSH, CFAP161, FAH, MESDC2, KIAA1024, TMED3, ST20-AS1, LINC00927, SAXO2, TMC3, IL16, ANKRD34C, ST20, MIR184, ZFAND6, CEMIP, ABHD17C, RASGRF1, MESDC1, BCL2A1, MIR549A, ANKRD34C-AS1, EFL1, STARD5, MEX3B, ARNT2) 0.363461791504835 30 0.0835829892499307 1.07817615443998 2451 0.369591031357234 3 2 1 -6.82398227174124 LTS-009 chr15 82564175 82574447 10273 * SAXO2 NA 0 NA 0.839 1 NA NA NA NA NA LTS-009 chr15 82574448 85164381 2589934 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, HDGFRP3, BTBD1, TM6SF1, ZSCAN2, ADAMTSL3, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, AP3B2, FAM103A1, HOMER2) 0.386384360465341 29 0.091255757629273 0.938430954162006 1390 0.337196804037043 3 2 1 -6.83243940622844 LTS-009 chr15 85164382 85164387 6 * c(ZSCAN2, LOC642423) NA 0 NA 1.077 1 NA NA NA NA NA LTS-009 chr15 85164388 101844385 16679998 * c(LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR3529, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, AKAP13, LRRC28, AGBL1, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, LINC00052, ADAMTS17, ACAN, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, NTRK3-AS1, LINC00928, FAM169B, ANPEP, NA NA NA NA NA NA NA NA NA LTS-009 IDH2, ZNF774, IGF1R, ARPIN, ISG20, KIF7, ZNF710, HDDC3, SPATA41, GDPGP1, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, NMB, NTRK3, FURIN, PCSK6, NGRN, RHCG, PDE8A, PLIN1, POLG, SCAND2P, ZSCAN2, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, ALPK3, RLBP1, BLM, LOC642423, KLHL25, NR2F2-AS1, AEN, CRTC3, TTC23, MRPS11, SNRPA1, NR2F2, HSP90B2P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 AGBL1-AS1, ASB9P1, LRRK1, ST8SIA2, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ARRDC4, LINC00923, ZNF592, SV2B) 0.375822667567733 268 0.0667728700502252 1.04390425545695 10319 0.376257120897457 3 2 1 -6.7801742474617 LTS-009 NA NA NA NA LTS-009 chr15 101844386 102516492 672107 * c(FAM138E, LOC100507472, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PCSK6, TM2D3) 0.428705741899898 8 0.0488669841800898 0.857056146851157 496 0.361176719136542 2 1 1 -6.77688298142819 LTS-009 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.765 1 NA NA NA NA NA LTS-009 chr16 81704 81779 76 * character(0) 0.228 1 NA 1.97 1 NA NA NA NA NA LTS-009 chr16 81780 848294 766515 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, JMJD8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, PDIA2, FAM173A, CAPN15, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.451286558187998 94 0.0614002558685835 0.838869502095367 3067 0.267006898512334 2 1 1 -6.77445354008139 LTS-009 chr16 848295 848468 174 * GNG13 NA 0 NA 0.577 1 NA NA NA NA NA LTS-009 chr16 848469 1392728 544260 * c(SSTR5-AS1, TPSD1, TPSG1, SOX8, PRR25, C1QTNF8, GNG13, TPSB2, LMF1, SSTR5, TPSAB1, UBE2I, CACNA1H, BAIAP3) 0.438070210599985 32 0.0720639277129644 0.713247552367993 891 0.307033862651235 2 1 1 -6.77447056012286 LTS-009 chr16 1392729 2650483 1257755 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, UNKL, NA NA NA NA NA NA NA NA NA LTS-009 LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.455151314546674 76 0.0651290904362454 0.845165667934379 4271 0.304718401834791 2 1 1 -6.79855002345962 LTS-009 NA NA NA NA LTS-009 chr16 2650484 2650491 8 * PDPK1 NA 0 NA 0.43 1 NA NA NA NA NA LTS-009 chr16 2650492 2732841 82350 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.479986208879662 155 0.282412904740805 1 NA NA -5.78230131204992 LTS-009 chr16 2732842 2747830 14989 * KCTD5 NA 0 NA 0.73 1 NA NA NA NA NA LTS-009 chr16 2747831 2973165 225335 * c(SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, SRRM2, PRSS33, PRSS41, KCTD5, PRSS22, TCEB2, PRSS27, FLYWCH1) 0.457539441882763 12 0.035470858717852 0.943292388458143 589 1.452078578546 2 1 1 -6.89307696994708 LTS-009 chr16 2973166 2979758 6593 * FLYWCH1 NA 0 NA 0.77 1 NA NA NA NA NA LTS-009 chr16 2979759 3641270 661512 * c(LOC100128770, MTRNR2L4, ZNF263, PAQR4, ZNF597, BICDL2, NLRC3, CLUAP1, OR1F2P, LINC00514, LINC00921, MEFV, OR1F1, OR2C1, TNFRSF12A, ZSCAN32, HCFC1R1, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, FLYWCH1, SLX4, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.444179036055939 58 0.0713334004726293 0.760879202790674 1872 0.271781013486824 2 1 1 -6.74692781373007 LTS-009 chr16 3641271 3642670 1400 * SLX4 NA 0 NA 1.494 1 NA NA NA NA NA LTS-009 chr16 3642671 5134595 1491925 * c(LINC01569, NAGPA-AS1, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf89, C16orf71, DNASE1, EEF2KMT, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, PPL, ALG1, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, SLX4, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.455797926810058 68 0.0361938584665077 0.868387572947467 2601 0.275431695049052 2 1 1 -6.94677121564072 LTS-009 chr16 5134596 5134981 386 * c(EEF2KMT, ALG1) NA 0 NA 0.459 1 NA NA NA NA NA LTS-009 chr16 5134982 7383165 2248184 * c(EEF2KMT, RBFOX1, ALG1) NA 0 NA 0.482445470178983 59 0.108202399257795 1 NA NA -7.91302072506434 LTS-009 chr16 7383166 7568085 184920 * RBFOX1 NA 0 NA 0.806 1 NA NA NA NA NA LTS-009 chr16 7568086 14962444 7394359 * c(MIR365A, MIR548X, MIR4718, RMI2, TEKT5, ABAT, EMP2, ERCC4, CLEC16A, NOMO1, CARHSP1, TMEM186, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, PARN, TXNDC11, BFAR, PMM2, RBFOX1, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, METTL22, ATF7IP2, SNN, PLA2G10, SOCS1, SNX29, LITAF) 0.445492448772233 63 0.0454452174946799 0.809254029699419 3476 0.29434582590994 2 1 1 -6.75916672408918 LTS-009 chr16 14962445 14968859 6415 * NOMO1 NA 0 NA 1.023 1 NA NA NA NA NA LTS-009 chr16 14968860 15129368 160509 * c(PDXDC1, NOMO1, NPIPA1) 0.412761361387761 7 0.0934655526052755 1.14248390266404 142 0.353386222984351 5 3 2 -6.78409106717248 LTS-009 chr16 15129369 15129881 513 * PDXDC1 NA 0 NA 0.77 1 NA NA NA NA NA LTS-009 chr16 15129882 16315578 1185697 * c(NPIPA5, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, ABCC6, ABCC1, MYH11, RRN3, NDE1, MIR484, C16orf45, KIAA0430) 0.442489942799396 31 0.061087193103713 0.837376089803479 1279 0.294008020190155 2 1 1 -6.756099361822 LTS-009 chr16 16315579 18804208 2488630 * c(MIR3179-2, ARL6IP1, NOMO2, PKD1P1, ABCC6, NOMO3, RPS15A, XYLT1, ABCC6P1) 0.452015775322397 4 0.0165126214353345 0.600902267825761 292 0.241664229088733 2 1 1 -8.62387437678256 LTS-009 chr16 18804209 19896627 1092419 * c(COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, TMC5, TMC7, CCP110) 0.436548122711958 26 0.0991872898184967 0.792523019705831 1427 0.294598448408111 2 1 1 -6.73355508149652 LTS-009 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.42 1 NA NA NA NA NA LTS-009 chr16 20015702 20634702 619001 * c(ACSM1, ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, UMOD) 0.418052974502836 20 0.0555842414244977 0.550610292474484 547 0.204992245251542 2 1 1 -7.82677335433794 LTS-009 chr16 20634703 20634729 27 * ACSM1 NA 0 NA 0.764 1 NA NA NA NA NA LTS-009 chr16 20634730 23718210 3083481 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, SNX29P1, IGSF6, CDR2, ERN2, ERI2, ACSM1, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, GGA2, NPIPB3, PDZD9, ANKS4B, EEF2K, SLC7A5P2, CRYM-AS1, NDUFAB1, METTL9, PLK1, DNAH3, THUMPD1, POLR3E, UBFD1, TMEM159, LYRM1, USP31, ACSM3, SCNN1B, SCNN1G, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, LOC81691, DCTN5, COG7, HS3ST2) 0.409890214063246 61 0.107880937710568 0.710783148827284 3611 0.259874947535539 2 1 1 -7.10783298156588 LTS-009 chr16 23718211 24374137 655927 * c(CACNG3, ERN2, PRKCB, CHP2) 0.413391868541459 5 0.0771154977938935 0.577499346989275 386 0.205227214378519 2 1 1 -7.63264797849704 LTS-009 chr16 24374138 24551496 177359 * RBBP6 NA 0 NA 0.839 1 NA NA NA NA NA LTS-009 chr16 24551497 25238616 687120 * c(LCMT1-AS2, SLC5A11, TNRC6A, AQP8, LCMT1, ARHGAP17, LOC554206, RBBP6) 0.472512710736975 7 0.0102423025685029 0.776175281430548 744 0.330962432879183 2 1 1 -10.1590344919466 LTS-009 chr16 25238617 25239668 1052 * AQP8 NA 0 NA 0.394 1 NA NA NA NA NA LTS-009 chr16 25239669 27472909 2233241 * c(C16orf82, NSMCE1, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, FLJ21408, IL21R, KDM8, HS3ST4) 0.471963525607448 13 0.126705796924841 0.640473642656801 532 0.171426413100177 1 1 0 -8.24581316412379 LTS-009 chr16 27472910 27473648 739 * GTF3C1 NA 0 NA 0.949 1 NA NA NA NA NA LTS-009 chr16 27473649 30198912 2725264 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, CDIPT, CORO1A, PRRT2, ATXN2L, SGF29, CLN3, TMEM219, C16orf92, GSG1L, ALDOA, XPO6, KIAA0556, QPRT, IL27, KCTD13, ASPHD1, SH2B1, SEZ6L2, NUPR1, LAT, C16orf54, INO80E, GTF3C1, KIF22, SBK1, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, ATP2A1, SLX1A, BOLA2, PPP4C, APOBR, MAPK3, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A2, SULT1A1, SULT1A3, TBX6, TUFM, GDPD3, PAGR1, NA NA NA NA NA NA NA NA NA LTS-009 RABEP2, SLC7A5P1, YPEL3, FAM57B, SPNS1, DOC2A, HIRIP3, NFATC2IP, CD19, TAOK2, MVP) 0.43229091451109 45 0.0844822197538953 0.800259618413783 3579 0.273688192904052 2 1 1 -6.73756850058673 LTS-009 NA NA NA NA LTS-009 chr16 30198913 30215892 16980 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, LOC606724, LOC613038) 0.494 1 NA 0.442047844811127 48 0.315625414823125 1 1 0 -5.77092474868152 LTS-009 chr16 30215893 30217274 1382 * c(SMG1P2, LOC613038) NA 0 NA 0.835 1 NA NA NA NA NA LTS-009 chr16 30217275 31226218 1008944 * c(MIR762, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, SRCAP, STX1B, ZNF689, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, SEPHS2, ZNF629, FUS, TBC1D10B, FBXL19-AS1, PYCARD, MYLPF, PRSS53, ITGAL, SMG1P2, TRIM72, ZNF771, PHKG2, FBXL19, PRSS8, SMG1P5, LOC613037, LOC613038, FBRS, ZNF747, SNORA30, STX4, LOC730183, PRR14, VKORC1, DCTPP1, ZNF768, ZNF668, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, NA NA NA NA NA NA NA NA NA LTS-009 ZNF646, SETD1A, RNF40) 0.460937663684525 53 0.0396314479811883 0.835845271129012 3150 0.259482337099358 2 1 1 -6.93167629323384 LTS-009 NA NA NA NA LTS-009 chr16 31226219 31227986 1768 * c(PYDC1, TRIM72) NA 0 NA 0.439 1 NA NA NA NA NA LTS-009 chr16 31227987 31437530 209544 * c(PYDC1, ITGAD, ITGAM, ITGAX, TRIM72) 0.468888052821184 9 0.0386979040488988 0.618500930252397 478 0.197951001871998 2 1 1 -7.26669606758947 LTS-009 chr16 31437531 31439021 1491 * ITGAD NA 0 NA 0.907 1 NA NA NA NA NA LTS-009 chr16 31439022 31519750 80729 * c(COX6A2, ZNF843, C16orf58, SLC5A2, TGFB1I1, ARMC5) 0.459665107629981 5 0.0341394200302231 0.836318954469176 343 0.238766384585849 2 1 1 -6.94563378662619 LTS-009 chr16 31519751 31766044 246294 * c(CLUHP3, ZNF720, YBX3P1, AHSP) 0.409857429139116 2 0.00777817459305199 0.559032620973994 120 0.20452732348129 5 3 2 -9.34719578931105 LTS-009 chr16 31766045 32890081 1124037 * c(ZNF267, ZNF720, SLC6A10P, LOC390705, NA, TP53TG3D) 0.302 1 NA 0.628700191402964 185 0.225024297160492 1 1 0 -5.89396959035068 LTS-009 chr16 32890082 33961325 1071244 * c(SLC6A10P, LOC390705, LINC00273) 0.333440336556651 16 0.113887206627142 0.70174663055652 185 0.444686339502959 1 1 0 -6.92182677825635 LTS-009 chr16 33961326 33961334 9 * LINC00273 0.224 1 NA 1.456 1 NA NA NA NA NA LTS-009 chr16 33961335 33962387 1053 * LINC00273 0.326097434033667 65 0.0835277706007916 1.15666592994621 90 0.46039170425662 7 5 2 -6.7343467227187 LTS-009 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.483 1 NA NA NA NA NA LTS-009 chr16 33965501 33965652 152 * character(0) 0.468677929178893 3 0.0529748367938338 0.60576837120187 23 0.209992386460894 2 1 1 -6.91482936955809 LTS-009 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.559045228942061 115 0.199698854896152 1 NA NA -5.76779497694927 LTS-009 chr16 46508169 46602819 94651 * ANKRD26P1 0.462 1 NA 0.66303246059054 95 0.299495277926982 1 1 0 -5.77916978598917 LTS-009 chr16 46602820 55513519 8910700 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, MMP2, PHKB, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.440285310650634 44 0.0823148572821875 0.761202625805677 4260 0.271532998240992 2 1 1 -6.87357930624301 LTS-009 chr16 55513520 69975631 14462112 * c(CDH3, CDH5, MIR1538, MIR3935, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, GNAO1, GOT2, TERB1, CES4A, NA NA NA NA NA NA NA NA NA LTS-009 EXOC3L1, LOC283856, LINC00922, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, TEPP, KIFC3, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, MT1IP, APOOP5, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, B3GNT9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.446171261372946 210 0.0542916446977128 0.819854524621813 12201 0.26801985540361 2 1 1 -6.84795460458681 LTS-009 NA NA NA NA LTS-009 chr16 69975632 69985153 9522 * c(WWP2, CLEC18C, CLEC18A) 0.24 1 NA 1.06147521590486 3 0.169334973745335 3 3 0 -5.76468627521851 LTS-009 chr16 69985154 70208128 222975 * c(MIR1972-1, PDXDC2P, CLEC18C, CLEC18A, PDPR) 0.33773459325305 7 0.107698432583545 0.806387534808715 193 0.389089276906616 3 2 1 -6.90665191069643 LTS-009 chr16 70208129 70211216 3088 * CLEC18C NA 0 NA 1.164 1 NA NA NA NA NA LTS-009 chr16 70211217 70608770 397554 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, AARS, FUK, SF3B3, COG4, CLEC18C, DDX19A, ST3GAL2, SNORD111) 0.32558978431369 14 0.0470331307124604 1.31282311664343 948 0.406031323181473 4 3 1 -6.75060761700791 LTS-009 chr16 70608771 70690933 82163 * c(IL34, SF3B3) 0.356849987345236 3 0.279739760015149 0.9830272643253 24 0.545366383960016 3 2 1 -6.74035847440414 LTS-009 chr16 70690934 70713635 22702 * c(IL34, MTSS1L) 0.494 1 NA 0.921516557421594 87 0.417173388644975 3 3 0 -5.76525917826874 LTS-009 chr16 70713636 71165843 452208 * c(VAC14-AS1, HYDIN, VAC14, MTSS1L) 0.439766385198902 82 0.0640044471599288 0.935772239233188 739 0.347412685757211 2 1 1 -6.79148420062083 LTS-009 chr16 71165844 71165912 69 * HYDIN NA 0 NA 0.593 1 NA NA NA NA NA LTS-009 chr16 71165913 71951156 785244 * c(SNORA70D, CHST4, AP1G1, PHLPP2, ATXN1L, HYDIN, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, MARVELD3, IST1) 0.465550704072712 13 0.0349484969046944 0.803235446360206 1048 0.287192373873448 2 1 1 -7.05929748393502 LTS-009 chr16 71951157 71954678 3522 * IST1 NA 0 NA 0.683 1 NA NA NA NA NA LTS-009 chr16 71954679 72130175 175497 * c(DHODH, HP, HPR, PKD1L3, TXNL4B, DHX38, IST1) 0.415787760513574 14 0.0490191709525888 0.684280407165691 428 0.275646968448293 2 1 1 -6.89702198046405 LTS-009 chr16 72130176 72130203 28 * DHX38 0.477 1 NA 1.133 1 NA NA NA NA NA LTS-009 chr16 72130204 74339587 2209384 * c(LINC01568, HCCAT5, ZFHX3, PSMD7, PMFBP1, DHX38) 0.469352030822117 12 0.0468039107405146 0.935030055482822 720 0.337421843832628 2 1 1 -7.26212510043486 LTS-009 chr16 74339588 74339666 79 * PSMD7 NA 0 NA 0.706 1 NA NA NA NA NA LTS-009 chr16 74339667 82032051 7692385 * c(LOC100129617, SYCE1L, MIR4720, MIR4719, CLEC3A, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GCSH, GLG1, LOC283922, NUDT7, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, RFWD3, CENPN, CMC2, PSMD7, VAT1L, FA2H, TMEM231, WDR59, CMIP, GAN, DYNLRB2, ZNRF1, CNTNAP4, SDR42E1, BCAR1) 0.447825501824115 101 0.0449041774060594 0.802207649146998 3621 0.309655990774146 2 1 1 -6.75872091651478 LTS-009 chr16 82032052 83828665 1796614 * c(MIR3182, CDH13, MPHOSPH6, HSD17B2, SDR42E1) 0.449986077303191 8 0.0423925111310948 0.635400918282021 276 0.245840961128619 2 1 1 -7.56285937303198 LTS-009 chr16 83828666 90141355 6312690 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH13, CDH15, EMC8, TUBB3, PRDM7, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, NA NA NA NA NA NA NA NA NA LTS-009 SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 ATP2C2) 0.445019077210696 222 0.0579018906331533 0.819523327819265 7130 0.454041703379227 2 1 1 -6.75505790448653 LTS-009 NA NA NA NA LTS-009 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.731097478806276 17 0.39964398678883 2 NA NA -5.7649482898462 LTS-009 chr17 6004 62646 56643 * c(DOC2B, RPH3AL) 0.217 1 NA 0.669438637483648 47 0.209729456582455 1 1 0 -5.78474007344254 LTS-009 chr17 62647 2937789 2875143 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, MIR22HG, SCARF1, NA NA NA NA NA NA NA NA NA LTS-009 RPH3AL, SGSM2) 0.220971519946517 80 0.0470275908780948 0.857520038082339 3487 0.41858963792518 2 2 0 -6.79694384331604 LTS-009 NA NA NA NA LTS-009 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.165 1 NA NA NA NA NA LTS-009 chr17 2965957 3406202 440246 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.239371911647995 13 0.0661553145334949 0.553435911103951 391 0.325538053037341 2 2 0 -7.12536676611354 LTS-009 chr17 3406203 10216745 6810543 * c(LOC100128288, C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, NA NA NA NA NA NA NA NA NA LTS-009 DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 UBE2G1, TRPV1, ZNF232, MIS12, PHF23, CTC1, NDEL1, PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.230781150274795 317 0.0584129659553619 0.836265103805186 12911 0.277623499340622 2 2 0 -6.90366462715242 LTS-009 NA NA NA NA LTS-009 chr17 10216746 10218989 2244 * MYH13 NA 0 NA 0.638 1 NA NA NA NA NA LTS-009 chr17 10218990 11887633 1668644 * c(LINC00675, MAGOH2P, TMEM220-AS1, DNAH9, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, ADPRM, SCO1, PIRT, ZNF18, MYH13) 0.255778140089008 19 0.0558382689622606 0.643249014156977 1698 0.211944633839203 1 1 0 -7.41523654854616 LTS-009 chr17 11887634 11893722 6089 * ZNF18 NA 0 NA 1.847 1 NA NA NA NA NA LTS-009 chr17 11893723 15406489 3512767 * c(MIR744, TVP23C-CDRT4, MIR4731, COX10-AS1, COX10, CDRT15, TVP23C, LINC00670, CDRT4, PMP22, ELAC2, MAP2K4, TEKT3, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.185508359317516 22 0.0801143798129515 0.773434720720532 1199 0.322431821172816 2 2 0 -6.82988857041912 LTS-009 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.486 1 NA NA NA NA NA LTS-009 chr17 15440243 15644037 203795 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A) 0.229090996799014 5 0.0729568365542257 0.598178087495204 502 0.491934727043908 2 2 0 -6.79617643246758 LTS-009 chr17 15644038 15644443 406 * TBC1D26 NA 0 NA 1.022 1 NA NA NA NA NA LTS-009 chr17 15644444 18315269 2670826 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF287, ZNF624, CDRT15P2, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A) 0.235331135234329 69 0.069964879753895 0.861052771868136 3801 0.310550369537421 2 2 0 -6.88443424337377 LTS-009 chr17 18315270 18456685 141416 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.20771586270821 3 0.097780366127357 0.266878598041882 72 0.275942530120997 1 1 0 -7.81061490359023 LTS-009 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.682 1 NA NA NA NA NA LTS-009 chr17 18483256 18770735 287480 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, PRPSAP2, ZNF286B) 0.25111355549258 10 0.0792411228817181 0.586015906826077 494 0.31139254856236 1 1 0 -6.96050969667396 LTS-009 chr17 18770736 18775860 5125 * PRPSAP2 NA 0 NA 0.775 1 NA NA NA NA NA LTS-009 chr17 18775861 21117589 2341729 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.214125131708905 40 0.0596509021575125 0.831081104614551 2108 0.338892792124003 2 2 0 -6.75601738589618 LTS-009 chr17 21117590 21199022 81433 * c(NATD1, MAP2K3, TMEM11) 0.308 1 NA 0.832989576617861 46 0.316001505071937 2 2 0 -5.76542719459331 LTS-009 chr17 21199023 22066835 867813 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.338685032278498 90 0.080685302115863 0.846859480451967 419 0.321511974317355 3 2 1 -7.11685944863229 LTS-009 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.709 1 NA NA NA NA NA LTS-009 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.262 1 NA 0.749343136092515 19 0.275771050900235 2 2 0 -5.76468343312905 LTS-009 chr17 25630389 26885571 1255183 * c(MIR4723, SLC46A1, TMEM199, LYRM9, SARM1, PPY2P, PYY2, POLDIP2, WSB1, TMEM97, KRT18P55, LGALS9, TBC1D3P5, NOS2, NLK, SEBOX, TNFAIP1, VTN, FOXN1, KSR1, IFT20, SLC13A2, UNC119, PIGS) 0.22456152308378 17 0.0524782868264132 0.816868768537065 1483 0.28899877921879 2 2 0 -6.75890727794746 LTS-009 chr17 26885572 27287272 401701 * c(SPAG5-AS1, MIR451B, MIR4732, NARR, SPAG5, TLCD1, SGK494, SEZ6, PROCA1, DHRS13, ALDOC, FLOT2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, NEK8, MIR144, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SUPT6H, RAB34, PIGS, TRAF4, KIAA0100) 0.180473949440274 24 0.0550213232710079 0.984878336369735 1600 0.311998734823688 3 3 0 -6.77054859118871 LTS-009 chr17 27287273 27494082 206810 * c(SEZ6, MYO18A, PIPOX, TIAF1) 0.172057925675603 5 0.0136124942607885 1.14306666026048 406 0.317750059927351 3 3 0 -6.81950933848433 LTS-009 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.46 1 NA NA NA NA NA LTS-009 chr17 27528620 27530504 1885 * character(0) NA 0 NA 0.505241936172921 45 0.184703250943482 1 NA NA -5.76487864904621 LTS-009 chr17 27530505 27573746 43242 * character(0) NA 0 NA 0.878 1 NA NA NA NA NA LTS-009 chr17 27573747 31340682 3766936 * c(MIR365B, MIR3184, MIR4523, MIR4724, MIR4733, MIR4725, LRRC37B, ABHD15, SPACA3, ANKRD13B, CPD, CRYBA1, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, TBC1D29, GIT1, EFCAB5, TMIGD1, ASIC2, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, PSMD11, NUFIP2, TAOK1, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, NA NA NA NA NA NA NA NA NA LTS-009 CORO6, SSH2, CDK5R1, TP53I13, GOSR1) 0.174840576346455 46 0.0433654563210439 0.991592170251113 4199 0.373824879838503 3 3 0 -6.76631299251567 LTS-009 NA NA NA NA LTS-009 chr17 31340683 31439165 98483 * ASIC2 NA 0 NA 1.14962590179143 51 0.340889087821946 4 NA NA -5.76793717121385 LTS-009 chr17 31439166 31618462 179297 * ASIC2 NA 0 NA 0.719 1 NA NA NA NA NA LTS-009 chr17 31618463 32612894 994432 * c(AA06, ASIC2, CCL2, CCL7, CCL11) 0.362 1 NA 0.523971236273543 95 0.179955737994591 1 1 0 -5.88730718576138 LTS-009 chr17 32612895 34433730 1820836 * c(SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, C17orf102, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL1, CCL3, CCL4, CCL5, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.296278725110689 40 0.0679064165617389 0.542019124062572 2453 0.231915218422266 1 1 0 -6.78323536508128 LTS-009 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.07 1 NA NA NA NA NA LTS-009 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.259282990196609 41 0.360498391458135 0 NA NA -5.80063364428237 LTS-009 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.474 1 NA NA NA NA NA LTS-009 chr17 34842415 36214044 1371630 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.289469155858486 9 0.0510533490032186 0.631810890210052 1538 0.264244774355572 1 1 0 -6.8881234070073 LTS-009 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.222 1 NA NA NA NA NA LTS-009 chr17 36214814 36421902 207089 * c(YWHAEP7, LOC440434) 0.367611514259261 3 0.103760943197975 0.33697838394564 80 0.19637248253952 0 0 0 -7.00576473336042 LTS-009 chr17 36421903 36453020 31118 * MRPL45 NA 0 NA 0.74 1 NA NA NA NA NA LTS-009 chr17 36453021 36491040 38020 * c(GPR179, MRPL45) 0.262 1 NA 0.585383826494159 197 0.173496925045096 1 1 0 -5.76501766244964 LTS-009 chr17 36491041 36491139 99 * GPR179 NA 0 NA 0.89 1 NA NA NA NA NA LTS-009 chr17 36491140 36666612 175473 * c(SOCS7, GPR179, ARHGAP23) 0.198897553998631 4 0.0377094152699296 0.979655286412059 199 0.296322279546556 2 2 0 -6.89209030735529 LTS-009 chr17 36666613 39316695 2650083 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA LTS-009 GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, KRTAP4-11, SMARCE1, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, KRTAP4-4, TNS4, FBXL20, KRTAP4-5, KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.26298866639725 135 0.0694126746566149 0.656558604223152 5816 0.249515362604423 1 1 0 -7.38667926074451 LTS-009 NA NA NA NA LTS-009 chr17 39316696 39316906 211 * KRTAP4-4 NA 0 NA 0.436 1 NA NA NA NA NA LTS-009 chr17 39316907 39471452 154546 * c(KRTAP9-7, KRTAP16-1, KRTAP9-6, KRTAP29-1, KRTAP9-1, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-3, KRTAP4-2) 0.303416999886043 11 0.0782489035647843 0.505317298987452 224 0.218469523584929 1 1 0 -6.76104812538733 LTS-009 chr17 39471453 39471513 61 * KRTAP17-1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-009 chr17 39471514 40841131 1369618 * c(LOC100505782, MIR5010, EIF1, P3H4, NT5C3B, CNP, LINC00974, FAM134C, ZNF385C, KCNH4, GAST, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, PSMC3IP, HCRT, KLHL10, HSD17B1, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, KRTAP17-1, GHDC, NA NA NA NA NA NA NA NA NA LTS-009 CNTNAP1, KRT38, KRT37, KRT36, HAP1, HSPB9) 0.26536910565195 43 0.0786185190608002 0.684234737329936 3376 0.216683581324607 2 2 0 -7.34477882500107 LTS-009 NA NA NA NA LTS-009 chr17 40841132 41131237 290106 * c(RAMP2-AS1, PTGES3L, PTGES3L-AARSD1, PSME3, RAMP2, CNTD1, EZH1, G6PC, COA3, AOC2, LINC00671, WNK4, AARSD1, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.195180002006136 3 0.169230611888039 0.620951707098617 835 0.190912554810307 1 1 0 -6.99373403165377 LTS-009 chr17 41131238 41143770 12533 * c(PTGES3L, PTGES3L-AARSD1, RUNDC1) 0 1 NA 1.0508826046679 74 0.389409386992053 3 3 0 -5.76444682482196 LTS-009 chr17 41143771 41150830 7060 * c(RUNDC1, RPL27) NA 0 NA 1.884 1 NA NA NA NA NA LTS-009 chr17 41150831 41196744 45914 * c(VAT1, IFI35, RPL27, BRCA1, RND2) NA 0 NA 1.70648149119851 126 0.567986039678654 6 NA NA -5.76441046198397 LTS-009 chr17 41196745 41466022 269278 * c(LINC00910, LINC00854, NBR2, TMEM106A, NBR1, BRCA1) 0.378517281048215 3 0.0887918915216925 1.00525294888811 403 0.491350142334124 3 2 1 -6.73900292467164 LTS-009 chr17 41466023 41522213 56191 * c(LINC00910, MIR2117, ARL4D) 0.121 1 NA 1.05130428337748 23 0.308665058885963 3 3 0 -5.76467973852089 LTS-009 chr17 41522214 44172146 2649933 * c(MAP3K14-AS1, HDAC5, MIR2117, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, NA NA NA NA NA NA NA NA NA LTS-009 EFTUD2) 0.156250009837102 53 0.0460207248069407 1.13843978047257 4065 0.570317942493457 3 3 0 -6.82334173746541 LTS-009 NA NA NA NA LTS-009 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.557 1 NA NA NA NA NA LTS-009 chr17 44248158 44430248 182091 * character(0) 0.181581848121733 2 0.00707106781186548 0.658111272216713 86 0.525678966597859 8 7 1 -7.34610664921229 LTS-009 chr17 44430249 44552561 122313 * character(0) NA 0 NA 1.934 1 NA NA NA NA NA LTS-009 chr17 44552562 45195821 643260 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.164078853938681 5 0.0261877834113542 1.06773936056863 248 0.563968715454931 3 3 0 -6.74456028053791 LTS-009 chr17 45195822 45214473 18652 * CDC27 0.383 1 NA 1.06543614154306 75 0.388315508851262 3 3 0 -5.76453461518004 LTS-009 chr17 45214474 45221318 6845 * CDC27 0.363728591771485 19 0.0783862083584779 1.10241788518073 47 0.532867259445271 6 4 2 -6.7362989227053 LTS-009 chr17 45221319 45249365 28047 * CDC27 0.24 1 NA 1.01033070136383 37 0.307602462237829 3 3 0 -5.76443639255997 LTS-009 chr17 45249366 46620111 1370746 * c(MIR1203, CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, HOXB1, HOXB2, ITGB3, KPNB1, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.169167051789829 36 0.0424504940424071 1.09160950522847 1562 0.36929452810448 3 3 0 -6.75969072057027 LTS-009 chr17 46620112 46620178 67 * HOXB2 NA 0 NA 3.292 1 NA NA NA NA NA LTS-009 chr17 46620179 46699002 78824 * c(HOXB-AS1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB-AS3, MIR10A) 0.202324927089781 4 0.0851528038293514 1.34782672739379 476 0.587059936278663 7 6 1 -6.75191154301466 LTS-009 chr17 46699003 48156876 1457874 * c(MIR3185, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, KAT7, NXPH3, SNF8, FLJ40194, B4GALNT2, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, HOXB9, PRAC2, ITGA3, MIR196A1, NGFR, ABI3, ATP5G1, PHB, UBE2Z, FLJ45513, FAM117A, SPOP, PRAC1) 0.162457549277983 19 0.0388948951084468 1.0328140499518 1973 0.369796777786167 3 3 0 -6.74308124432939 LTS-009 chr17 48156877 49231544 1074668 * c(TOB1, CHAD, WFIKKN2, COL1A1, EME1, TMEM92, SAMD14, CACNA1G-AS1, ITGA3, HILS1, TOB1-AS1, NME1, MRPL27, PDK2, LUC7L3, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, NME1-NME2, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.166691706504317 39 0.0339290957109452 1.1698071345328 2671 0.472881154501217 3 3 0 -6.78489372035061 LTS-009 chr17 49231545 58176778 8945234 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, CLTC, HSF5, OR4D2, MSI2, COX11, DYNLL2, ANKFN1, PPM1E, MMD, MTVR2, STXBP4, OR4D1, C17orf47, GDPD1, HLF, C17orf67, SKA2, RNF126P1, YPEL2, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, MRPS23, PTRH2, SEPT4, MBTD1, RNF43, MKS1, SMG8, TMEM100, MSX2P1, PRR11, TEX14, CA10, PCTP, RAD51C, SCPEP1, NA NA NA NA NA NA NA NA NA LTS-009 RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, NME1-NME2, SUPT4H1, MIR454, TRIM25, VEZF1, DHX40, COIL, AKAP1, VMP1, EPX, KIF2B, DGKE, MTMR4, NOG, TSPOAP1) 0.151771282742158 52 0.0462599180185499 1.05995986359664 4140 0.380464565133228 3 3 0 -6.84736306533479 LTS-009 NA NA NA NA LTS-009 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.463 1 NA NA NA NA NA LTS-009 chr17 58177075 58286907 109833 * c(LOC653653, CA4, USP32) NA 0 NA 0.777080441536096 155 0.268737675373329 2 NA NA -5.76493049272563 LTS-009 chr17 58286908 58288309 1402 * USP32 NA 0 NA 1.392 1 NA NA NA NA NA LTS-009 chr17 58288310 71418511 13130202 * c(SNORA38B, LINC00674, LINC00673, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, SLC39A11, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, CDC42EP4, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, METTL2A, NACA2, APOH, LRRC37A3, NA NA NA NA NA NA NA NA NA LTS-009 KCNJ2, KCNJ16, KPNA2, C17orf82, KCNJ2-AS1, LINC00511, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TACO1, AMZ2, PECAM1, SDK2, FAM20A, BCAS3, C17orf80, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, INTS2, SCN4A, CPSF4L, SMURF2, SMARCD2, SOX9, SSTR2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CACNG1, LIMD2, KCNH6, AXIN2, BRIP1, USP32, FAM104A, PPM1D, RGS9, CEP95, SLC16A6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 STRADA, PRR29, COG1, TBX4, CD79B, MRC2, HELZ, MED13) 0.164482168656414 100 0.0538899467770786 1.07757753656805 7433 0.385327738659777 3 3 0 -6.87637550441433 LTS-009 NA NA NA NA LTS-009 chr17 71418512 72743097 1324586 * c(CD300LD, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, LINC00469, RAB37, CD300E, GPR142, BTBD17, LOC400620, SDK2, GPRC5C, RPL38, DNAI2, MGC16275, TTYH2) 0.182796363464743 35 0.0559506835668398 0.827665706407199 1190 0.332041330504648 2 2 0 -6.93678843497147 LTS-009 chr17 72743098 80363378 7620281 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, NA NA NA NA NA NA NA NA NA LTS-009 SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, OTOP3, MCRIP1, ZACN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.181478220108852 250 0.047646877797558 1.09688817770305 12496 0.377080848306398 3 3 0 -6.9391884986643 LTS-009 NA NA NA NA LTS-009 chr17 80363379 80386556 23178 * c(HEXDC, OGFOD3) 0.205786983365177 2 0.0233345237791561 2.38195564938464 39 0.986778800344696 7 6 1 -6.73385672440878 LTS-009 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.837 1 NA NA NA NA NA LTS-009 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.169031645459018 17 0.0512173856052346 1.1721096788944 881 0.346055582720701 3 3 0 -6.79451491598307 LTS-009 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.15698754220068 13 0.248958651700258 4 NA NA -5.76627945174782 LTS-009 chr18 116845 121139 4295 * ROCK1P1 0.223 1 NA 0.454119424753265 25 0.121534247573815 1 1 0 -5.77327398771662 LTS-009 chr18 121140 122129 990 * ROCK1P1 NA 0 NA 0.341383380427617 27 0.157510719573706 0 NA NA -5.76441027810314 LTS-009 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.606 1 NA NA NA NA NA LTS-009 chr18 122232 6374417 6252186 * c(MIR4317, MIR3976, DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, LINC00526, DLGAP1-AS3, EPB41L3, SMCHD1, CLUL1, DLGAP1-AS5, LINC00667, TYMSOS, ENOSF1, LINC00470, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, TGIF1, LOC727896, TYMS, YES1, ZBTB14, COLEC12, EMILIN2, MYOM1, USP14, L3MBTL4, DLGAP1, LPIN2, THOC1) 0.252869022449478 54 0.0540671380395999 0.773690809318541 2440 0.381279367376337 2 2 0 -7.03403546339764 LTS-009 chr18 6374418 13681962 7307545 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, RAB12, ANKRD12, MTCL1, GNAL, LAMA1, LRRC30, ANKRD62, IMPA2, LINC00668, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, MPPE1, LDLRAD4, ARHGAP28, CEP76, SEH1L, TXNDC2, TUBB6, NAPG, L3MBTL4, VAPA, PPP4R1) 0.22926641454315 113 0.0470501470781533 0.852697722332756 3868 0.744492781927329 2 2 0 -6.82493543368613 LTS-009 chr18 13681963 13760290 78328 * c(FAM210A, RNMT) 0.388 1 NA 0.783523870228294 63 0.180420920775152 2 2 0 -5.76476252966563 LTS-009 chr18 13760291 14866503 1106213 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.38867224391245 15 0.0547689519275118 0.864337237321733 347 0.430867639099776 3 2 1 -6.83294783946259 LTS-009 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.00800828758127 33 0.405452714146904 3 NA NA -5.7645166215537 LTS-009 chr18 18529727 18535133 5407 * ROCK1 NA 0 NA 0.554910281555823 54 0.172873730493153 1 NA NA -5.7644787628803 LTS-009 chr18 18535134 19080582 545449 * c(ROCK1, GREB1L) 0 1 NA 0.938164186923162 289 0.243135341548449 3 3 0 -5.80532225937723 LTS-009 chr18 19080583 19997667 917085 * c(GATA6-AS1, MIR320C1, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, CTAGE1, SNRPD1, GREB1L) 0.354 1 NA 0.934206909720951 579 0.286894419759876 3 3 0 -5.81865348720707 LTS-009 chr18 19997668 23748652 3750985 * c(MIR320C2, MIR4741, OSBPL1A, TTC39C, PSMA8, ANKRD29, ZNF521, CABYR, C18orf8, LAMA3, NPC1, IMPACT, RBBP8, HRH4, CTAGE1, SS18, LOC729950, TMEM241, RIOK3, CABLES1) 0.372008400904747 33 0.0832804453383721 1.06767038442706 1908 0.429242123620415 3 2 1 -6.77556827931848 LTS-009 chr18 23748653 23748855 203 * PSMA8 NA 0 NA 0.153 1 NA NA NA NA NA LTS-009 chr18 23748856 23759049 10194 * PSMA8 NA 0 NA 0.522256899519966 39 0.326086178304925 1 NA NA -5.76483344615901 LTS-009 chr18 23759050 23772280 13231 * PSMA8 NA 0 NA 1.087 1 NA NA NA NA NA LTS-009 chr18 23772281 28709195 4936915 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC2, DSC3, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.357794773748943 9 0.138426876003181 1.0432536540385 716 0.379195252025768 3 2 1 -6.76820271314309 LTS-009 chr18 28709196 28709348 153 * DSC1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-009 chr18 28709349 28923386 214038 * c(DSC1, DSG1) 0.395305316389784 5 0.204555127044032 0.848390256234111 175 0.279841268401966 2 1 1 -6.76707788310704 LTS-009 chr18 28923387 28935375 11989 * DSG1 0.458 1 NA 0.711504965802305 39 0.112471750839231 2 2 0 -5.77153969673132 LTS-009 chr18 28935376 45158000 16222625 * c(ZSCAN30, MIR4319, MIR4318, TCEB3CL2, MIR3975, DSG2-AS1, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, HAUS1, LOXHD1, INO80C, C18orf25, SLC25A52, DSG4, TCEB3C, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, CCDC178, MIR187, MEP1B, WBP11P1, RNF165, ATP5A1, IER3IP1, TCEB3B, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, EPG5, RIT2, NA NA NA NA NA NA NA NA NA LTS-009 KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, SYT4, TTR, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, C18orf21, HDHD2, ZNF397, NOL4, PSTPIP2, PIAS2, B4GALT6) 0.441152160672975 114 0.06433708871498 0.807210651374153 5900 0.47042231091526 2 1 1 -6.74245563678349 LTS-009 NA NA NA NA LTS-009 chr18 45158001 45357895 199895 * character(0) NA 0 NA 1.217 1 NA NA NA NA NA LTS-009 chr18 45357896 47919894 2561999 * c(SNORD58C, MIR1539, MIR4320, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, SKA1, CFAP53, SNORD58B, SNORD58A, CXXC1, SMAD2, SMAD7, MBD1, MYO5B, C18orf32, DYM, RPL17, SCARNA17, LIPG, CTIF) 0.440879759357752 28 0.0930061939679402 0.923305861135437 1346 0.340101581424515 2 1 1 -7.0130011408267 LTS-009 chr18 47919895 50450240 2530346 * c(LINC01630, DCC, SKA1, SMAD4, ME2, MEX3C, ELAC1, MAPK4, MRO) 0.444828404077902 9 0.0394401797381525 0.754605001987633 659 0.27182596304264 2 1 1 -6.80339714503653 LTS-009 chr18 50450241 50451795 1555 * DCC 0.32 1 NA 1.12795638859624 5 0.834729776634331 3 3 0 -5.76442298083709 LTS-009 chr18 50451796 51729514 1277719 * c(DCC, MBD2) 0.275395021467778 2 0.0367695526217005 0.793400246098424 292 0.228857129421501 2 2 0 -8.02694946288137 LTS-009 chr18 51729515 54361916 2632402 * c(LINC01539, MIR4529, POLI, STARD6, C18orf54, WDR7, DYNAP, RAB27B, SNORA37, TCF4, CCDC68, MBD2, TXNL1) 0.304884829701361 24 0.0485311792801168 0.58868253315447 892 0.223457975600957 1 1 0 -6.77375647126679 LTS-009 chr18 54361917 55283185 921269 * c(LINC-ROR, FECH, WDR7, BOD1L2, NARS, ST8SIA3, ONECUT2) 0.317050303635714 11 0.0514691434480187 0.504606355860179 757 0.171569271559392 1 1 0 -7.05281859396372 LTS-009 chr18 55283186 55283236 51 * NARS 0.259 1 NA 1.212 1 NA NA NA NA NA LTS-009 chr18 55283237 59973964 4690728 * c(LOC100505549, MIR3591, LINC01544, MALT1, ALPK2, CCBE1, RNF152, NEDD4L, PIGN, CDH20, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ATP8B1, PMAIP1, ZNF532, KIAA1468, SEC11C) 0.298481050391805 49 0.0956997634683135 0.628640528006988 1954 0.236654758094142 1 1 0 -7.19458519512 LTS-009 chr18 59973965 63549787 3575823 * c(CDH7, LINC00305, PHLPP1, KDSR, HMSD, LOC284294, LINC01538, SERPINB2, SERPINB5, SERPINB8, SERPINB10, SERPINB13, ZCCHC2, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, VPS4B) 0.275215082061873 17 0.0715045761596047 0.524629903443104 1532 0.184709666712077 1 1 0 -7.19702452308721 LTS-009 chr18 63549788 66513764 2963977 * c(MIR5011, CDH19, TMX3, LOC643542, CCDC102B, DSEL) 0.254250607402639 6 0.142751532391075 0.640657268004169 499 0.267792185101007 1 1 0 -7.12549408328143 LTS-009 chr18 66513765 66541840 28076 * CCDC102B NA 0 NA 0.375 1 NA NA NA NA NA LTS-009 chr18 66541841 71807614 5265774 * c(LINC01541, LOC100505817, CD226, CBLN2, FBXO15, DOK6, RTTN, LOC400655, CCDC102B, NETO1, SOCS6) 0.261979847733169 12 0.0941834122949214 0.514600356671767 773 0.200930482033511 1 1 0 -7.53497048434032 LTS-009 chr18 71807615 71814920 7306 * FBXO15 NA 0 NA 1.084 1 NA NA NA NA NA LTS-009 chr18 71814921 77941019 6126099 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, PARD6G, CNDP1, CTDP1, ZNF516) 0.331863884838188 80 0.065978888788936 0.592135968513352 2472 0.206088553777934 1 1 0 -6.99817100095427 LTS-009 chr18 77941020 78005362 64343 * PARD6G NA 0 NA 0.59820594858151 13 0.1169468978771 1 NA NA -5.77145376557176 LTS-009 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.164 1 NA 0.845715416176771 19 0.3210952109623 2 2 0 -5.7681744632217 LTS-009 chr19 282754 2444593 2161840 * c(MED16, LOC100288123, MIR1909, MIR1227, MIR3187, MIR4321, MIR4745, FSTL3, APC2, ABCA7, UQCR11, IZUMO4, SCAMP4, ADAT3, CIRBP, GRIN3B, JSRP1, MOB3A, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, FGF22, ODF3L2, MKNK2, GPX4, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, NA NA NA NA NA NA NA NA NA LTS-009 OAZ1, PALM, THEG, ATP5D, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, BTBD2, RNF126, PRTN3, AZU1, SPPL2B, PTBP1, WDR18, REXO1, HCN2, RPS15, LINGO3, STK11, BSG, TCF3, PLPPR3, MADCAM1, SF3A2, ABHD17A, KLF16, DOT1L, KISS1R, LMNB2, MUM1, PLPP2, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.22745996890022 184 0.0697189381714048 0.868522165110946 5196 0.305518177095977 2 2 0 -6.85630765711705 LTS-009 NA NA NA NA LTS-009 chr19 2444594 2456654 12061 * LMNB2 NA 0 NA 1.309 1 NA NA NA NA NA LTS-009 chr19 2456655 2576204 119550 * c(GNG7, GADD45B, LMNB2) 0.171427754746838 8 0.107864994983809 1.35164662292319 69 0.457170892625437 3 3 0 -6.76046878138526 LTS-009 chr19 2576205 2642750 66546 * GNG7 NA 0 NA 0.772 1 NA NA NA NA NA LTS-009 chr19 2642751 4555576 1912826 * c(C19orf71, CHAF1A, MIR4746, EBI3, HMG20B, SEMA6B, ZNF554, MRPL54, LRG1, TMIGD2, ZNF57, MFSD12, GIPC3, DIRAS1, ZNF555, DAPK3, AES, ANKRD24, EEF2, ZFR2, PIP5K1C, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, SLC39A3, CACTIN-AS1, MATK, PLIN5, NFIC, ZBTB7A, FZR1, SIRT6, PIAS4, STAP2, CCDC94, MAP2K2, NCLN, SHD, ZNF77, CACTIN, CELF5, SGTA, SH3GL1, TBXA2R, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, NA NA NA NA NA NA NA NA NA LTS-009 ZNF556, UBXN6, DOHH, CREB3L3, HDGFRP2, RAX2, MPND, ATCAY, S1PR4, APBA3) 0.241418814923265 101 0.0699372788310857 0.822875906331565 3440 0.339554066650554 2 2 0 -6.82838329209735 LTS-009 NA NA NA NA LTS-009 chr19 4555577 4555980 404 * SEMA6B NA 0 NA 0.94 1 NA NA NA NA NA LTS-009 chr19 4555981 5775337 1219357 * c(DPP9-AS1, MIR4747, PLIN3, SEMA6B, C19orf70, TNFAIP8L1, TICAM1, ZNRF4, KDM4B, TINCR, CATSPERD, RPL36, MIR7-3HG, UHRF1, HSD11B1L, MIR7-3, FEM1A, MYDGF, PTPRS, SAFB, ARRDC5, DPP9, LONP1, SAFB2) 0.191981914989394 21 0.0870309742344097 0.908665460303423 1332 0.291520460270832 3 3 0 -6.8986997276709 LTS-009 chr19 5775338 5778517 3180 * CATSPERD 0.311 1 NA 1.0128838010199 9 0.0974646659621379 3 3 0 -5.76442874436363 LTS-009 chr19 5778518 5784653 6136 * c(PRR22, CATSPERD) 0.36994791745544 5 0.0356959381442763 0.899757005215661 48 0.1315498381948 6 4 2 -6.8254945982734 LTS-009 chr19 5784654 5784689 36 * PRR22 NA 0 NA 1.071 1 NA NA NA NA NA LTS-009 chr19 5784690 6828040 1043351 * c(LOC100128568, SH2D3A, MIR3940, TUBB4A, ACER1, NDUFA11, PRR22, FUT3, FUT5, FUT6, SLC25A41, GTF2F1, VMAC, MLLT1, NRTN, PSPN, GPR108, DUS3L, RFX2, C3, VAV1, SLC25A23, DENND1C, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, TNFSF14, TNFSF9, CRB3, TRIP10, CD70) 0.340573712852366 30 0.0513771719064357 1.01158656750782 1664 0.665199259275582 4 3 1 -6.90536437747144 LTS-009 chr19 6828041 6828090 50 * VAV1 NA 0 NA 0.618 1 NA NA NA NA NA LTS-009 chr19 6828091 7011873 183783 * c(ADGRE1, ADGRE4P, FLJ25758, VAV1) 0.305237447491428 8 0.14095940398366 0.741597933908014 302 0.329748215514625 1 1 0 -6.80396769829049 LTS-009 chr19 7011874 8807832 1795959 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, ACTL9, MBD3L5, CD209, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, NA NA NA NA NA NA NA NA NA LTS-009 ZNF414, FBN3, RAB11B, PEX11G) 0.348094065100273 95 0.0534070070183325 1.02087106950599 2950 0.351410418475304 3 2 1 -7.03913270663024 LTS-009 NA NA NA NA LTS-009 chr19 8807833 9021118 213286 * c(ZNF558, ACTL9, OR2Z1, MBD3L1, MUC16) 0.346482194676619 28 0.084544719077004 0.87132452173229 426 0.518196161778817 4 3 1 -6.85987313377123 LTS-009 chr19 9021119 9024951 3833 * MUC16 0.119 1 NA 0.974434238028674 15 0.923362865266078 3 3 0 -5.7644164327449 LTS-009 chr19 9024952 9083124 58173 * MUC16 0.200487241741848 9 0.104345712790597 0.8234505253018 623 0.42948212991207 2 2 0 -6.74486789318918 LTS-009 chr19 9083125 9083143 19 * MUC16 0.321 1 NA 1.113 1 NA NA NA NA NA LTS-009 chr19 9083144 10200641 1117498 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, C3P1, OR7G2, OR7G3, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2, MUC16) 0.37885885771632 38 0.0540659533488687 0.816796753800094 1550 0.324288191373615 3 2 1 -7.05341909838321 LTS-009 chr19 10200642 11687420 1486779 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, NA NA NA NA NA NA NA NA NA LTS-009 PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.344575205154464 54 0.0511050219688853 1.03706779021426 3549 0.346910262484591 3 2 1 -7.12584231130813 LTS-009 NA NA NA NA LTS-009 chr19 11687421 12740667 1053247 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.325195514437743 34 0.0938129372817312 0.824677497125342 1718 0.456491969643724 3 2 1 -7.12180922802289 LTS-009 chr19 12740668 13002285 261618 * c(RNASEH2A, KLF1, ZNF791, DHPS, DNASE2, MAST1, GCDH, SNORD41, HOOK2, TNPO2, JUNB, MAN2B1, ASNA1, WDR83OS, BEST2, PRDX2, C19orf43, RTBDN, FBXW9, WDR83) 0.311723864649903 11 0.0742412529282988 0.993562315541687 1027 0.30876368622287 4 3 1 -6.82313191460036 LTS-009 chr19 13002286 13205558 203273 * c(DAND5, FARSA, SYCE2, GCDH, NFIX, RAD23A, CALR, GADD45GIP1) 0.328010639426836 2 0.0494974746830583 1.2698985475808 319 0.28940956544565 4 3 1 -6.75601380867372 LTS-009 chr19 13205559 13210091 4533 * c(LYL1, NFIX) NA 0 NA 0.8 1 NA NA NA NA NA LTS-009 chr19 13210092 14682914 1472823 * c(LOC100507373, DDX39A, GIPC1, NACC1, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, DNAJB1, NANOS3, PALM3, LYL1, MIR181C, NDUFB7, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RFX1, C19orf67, ZSWIM4, MIR639, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, STX10, SAMD1, DCAF15, IL27RA, TECR, IER2, ADGRE5) 0.34365397860177 33 0.0783277036984148 1.01256319833855 2070 0.339314189654008 3 2 1 -6.91399292504448 LTS-009 chr19 14682915 14693832 10918 * character(0) NA 0 NA 0.653 1 NA NA NA NA NA LTS-009 chr19 14693833 15218338 524506 * c(OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.335384072604367 14 0.113163719771522 0.714290786076327 639 0.308469191858971 1 1 0 -6.9552033469861 LTS-009 chr19 15218339 15567427 349089 * c(MIR1470, AKAP8, ILVBL, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3, SYDE1) 0.331079834862413 14 0.10271107989923 1.05158055830817 855 0.34654268434743 4 3 1 -6.79360609706902 LTS-009 chr19 15567428 15568133 706 * RASAL3 NA 0 NA 0.64 1 NA NA NA NA NA LTS-009 chr19 15568134 16145610 577477 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, RASAL3, UCA1, CYP4F12, CYP4F2) 0.327506156931081 28 0.0426253520210758 0.804598151543108 612 0.345020879980098 4 3 1 -7.27711432840528 LTS-009 chr19 16145611 16757250 611640 * c(KLF2, CHERP, CIB3, CALR3, LINC00905, FAM32A, RAB8A, EPS15L1, TPM4, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, MED26) 0.352381407679255 20 0.0578468713615161 1.00516990270786 814 0.33809996323546 3 2 1 -6.94423357989646 LTS-009 chr19 16757251 16928752 171502 * c(NWD1, TMEM38A, SMIM7) 0.372947190780981 3 0.0340440890610984 0.783572001465478 272 0.255772712949821 3 2 1 -6.94640167204962 LTS-009 chr19 16928753 16940592 11840 * c(SIN3B, NWD1) NA 0 NA 1.221 1 NA NA NA NA NA LTS-009 chr19 16940593 20117963 3177371 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, CCDC124, NXNL1, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, CILP2, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, CPAMD8, SLC25A42, LINC00663, BABAM1, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, HAPLN4, BORCS8-MEF2B, ZNF506, MYO9B, NDUFA13, GMIP, PDE4C, ISYNA1, NA NA NA NA NA NA NA NA NA LTS-009 PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ZNF253, ATP13A1, ANO8, SUGP1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, LOC729966, BORCS8, UBA52, ZNF14, DDA1, KXD1, ABHD8, OCEL1, COLGALT1, PBX4, KIAA1683, ELL, ZNF93, PLVAP, USHBP1, TSSK6, GTPBP3, MPV17L2, RFXANK, F2RL3, ZNF682, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, HOMER3, GDF15) 0.35259347933225 137 0.0597285077068702 0.999530114891192 6210 0.326017730824034 3 2 1 -6.93772648457531 LTS-009 NA NA NA NA LTS-009 chr19 20117964 20117999 36 * ZNF682 NA 0 NA 1.095 1 NA NA NA NA NA LTS-009 chr19 20118000 22153544 2035545 * c(ZNF737, MIR1270, ZNF738, ZNF714, ZNF100, ZNF431, ZNF626, ZNF493, ZNF429, LINC00664, LOC641367, ZNF826P, ZNF708, ZNF43, ZNF85, ZNF90, ZNF208, ZNF430, ZNF486, ZNF682) 0.375226921540599 10 0.0437265492705646 0.823601963537654 640 0.266463968664141 3 2 1 -7.49200300242651 LTS-009 chr19 22153545 23159748 1006204 * c(ZNF729, ZNF257, ZNF98, ZNF676, ZNF728, GOLGA2P9, ZNF492, ZNF99, ZNF208) 0.328621574541978 8 0.0588842690610756 0.663840455151389 279 0.237764271478989 1 1 0 -7.10868198964246 LTS-009 chr19 23159749 23159828 80 * ZNF728 NA 0 NA 0.848 1 NA NA NA NA NA LTS-009 chr19 23159829 24115138 955310 * c(ZNF730, ZNF681, ZNF675, ZNF728, RPSAP58, ZNF724, ZNF726, ZNF91) 0.340447951284779 6 0.0716642635256002 0.925216742114259 318 0.433782538647953 3 2 1 -7.00883211430994 LTS-009 chr19 24115139 24345121 229983 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.8111668070458 103 0.373144280033451 2 NA NA -5.76476970811655 LTS-009 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.253 1 NA 0.966885616612074 5 0.535594996242497 3 3 0 -5.77308466223372 LTS-009 chr19 29567135 31039074 1471940 * c(POP4, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, ZNF536) 0.257491885886203 5 0.0339926462635671 2.09373333497881 383 0.567495872479251 9 7 2 -6.78987141264995 LTS-009 chr19 31039075 35802938 4763864 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, ZNF30, PDCD5, FAAP24, NA NA NA NA NA NA NA NA NA LTS-009 TDRD12, NA, KIAA0355, ZNF536) 0.40354902333076 71 0.0661935397773038 1.37918846034594 3026 0.488503199944808 5 3 2 -6.8098060808029 LTS-009 NA NA NA NA LTS-009 chr19 35802939 35803095 157 * MAG NA 0 NA 0.642 1 NA NA NA NA NA LTS-009 chr19 35803096 35851335 48240 * c(MIR5196, FFAR1, FFAR3, MAG, CD22) 0.430580930829776 3 0.0385529938310027 0.982105462278186 151 0.447437946861228 2 1 1 -6.76845524653847 LTS-009 chr19 35851336 35863689 12354 * FFAR3 NA 0 NA 0.273853414160007 39 0.347176712015253 0 NA NA -5.76746276477441 LTS-009 chr19 35863690 35863705 16 * character(0) NA 0 NA 0.744 1 NA NA NA NA NA LTS-009 chr19 35863706 36038390 174685 * c(LINC01531, TMEM147-AS1, TMEM147, GAPDHS, FFAR2, SBSN, KRTDAP, DMKN) 0.378455584215365 16 0.0474466366914804 1.29837226763877 314 0.390768720347911 3 2 1 -6.79234357185437 LTS-009 chr19 36038391 36223111 184721 * c(UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, ZBTB32, ATP4A, RBM42, KMT2B) 0.329 1 NA 1.20643248895029 551 0.333677516556437 4 4 0 -5.76563472162822 LTS-009 chr19 36223112 36673878 450767 * c(HCST, TBCB, ARHGAP33, HSPB6, COX7A1, ZNF565, PROSER3, SYNE4, THAP8, U2AF1L4, CLIP3, WDR62, APLP1, NPHS1, POLR2I, PSENEN, LIN37, PRODH2, SDHAF1, OVOL3, TYROBP, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ALKBH6, KMT2B) 0.317142237911687 18 0.122592968590015 1.19533179406231 1488 0.413645620958063 4 3 1 -6.73619496072989 LTS-009 chr19 36673879 38388988 1715110 * c(LOC100134317, LINC00665, ZNF571-AS1, LOC100631378, ZNF573, ZNF420, ZNF565, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, ZNF345, ZFP82, ZNF790-AS1, LOC284412, HKR1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, ZFP14, ZNF529, LOC644189, LOC644554, LOC728752, ZNF146, WDR87, ZNF527, ZNF607, ZNF382, ZNF566, ZNF461, ZNF585B) 0.32306823490584 42 0.0483738165995219 1.04393690595991 2181 0.333092603533681 4 3 1 -7.02427134513935 LTS-009 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 2.314 1 NA NA NA NA NA LTS-009 chr19 38571875 39826180 1254306 * c(IFNL4, PAK4, SPINT2, MAP4K1, FBXO17, RASGRP4, RINL, FBXO27, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, HNRNPL, NCCRP1, SYCN, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, SARS2, PSMD8, LRFN1, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, LGALS7B, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A, GMFG) 0.324340763103841 22 0.0514114419525106 1.25059024823035 2617 0.443444138245482 4 3 1 -6.74107228745936 LTS-009 chr19 39826181 39826551 371 * GMFG NA 0 NA 1.624 1 NA NA NA NA NA LTS-009 chr19 39826552 40030703 204152 * c(MIR4530, DLL3, EID2B, EID2, SELENOV, PAF1, SAMD4B, MED29, RPS16, PLEKHG2, SUPT5H, ZFP36, TIMM50, GMFG) 0.416358904194945 14 0.0544014382486023 1.40600535512773 747 0.366023353580442 5 3 2 -6.73521225133281 LTS-009 chr19 40030704 40030751 48 * EID2 NA 0 NA 1.019 1 NA NA NA NA NA LTS-009 chr19 40030752 40316459 285708 * c(LOC100129935, CLC, LGALS16, EID2, LGALS13, LEUTX, LGALS17A, LGALS14, DYRK1B) 0.301 1 NA 0.899688184531735 129 0.239639015858252 2 2 0 -5.80896267045178 LTS-009 chr19 40316460 40354067 37608 * c(FBL, FCGBP, DYRK1B) 0.268706212506943 2 0.0622253967444162 1.62489836265306 97 0.344160933382931 5 4 1 -6.73489149565307 LTS-009 chr19 40354068 40354143 76 * FCGBP NA 0 NA 0.826 1 NA NA NA NA NA LTS-009 chr19 40354144 40719923 365780 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.278559122486414 16 0.121706477504965 1.01015959604043 736 0.470198430062427 4 3 1 -6.84115156826627 LTS-009 chr19 40719924 40719929 6 * MAP3K10 NA 0 NA 1.257 1 NA NA NA NA NA LTS-009 chr19 40719930 41962394 1242465 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AKT2, CYP2G1P, PLD3, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.299756335186023 70 0.0572180258701054 1.2796765343679 2480 0.431454879111566 4 3 1 -6.79824705821918 LTS-009 chr19 41962395 42026804 64410 * PCAT19 NA 0 NA 0.847 1 NA NA NA NA NA LTS-009 chr19 42026805 42352600 325796 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, DMRTC2, CEACAM21) 0.322841909864348 3 0.0187349939951952 0.875081322059288 344 0.228228242136787 4 3 1 -7.20868888278079 LTS-009 chr19 42352601 42352860 260 * DMRTC2 NA 0 NA 1.806 1 NA NA NA NA NA LTS-009 chr19 42352861 43012087 659227 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.301847241608725 32 0.0666506827276699 1.25675885815421 1660 0.426874823373346 4 3 1 -6.76981941095666 LTS-009 chr19 43012088 43268069 255982 * c(LIPE-AS1, CEACAM8, PSG8, PSG1, PSG3, CEACAM1) 0.278126179131114 8 0.0485768904492073 0.887119578259486 140 0.592020188331084 5 4 1 -6.86324753693703 LTS-009 chr19 43268070 43347824 79755 * c(LOC100289650, PSG8, PSG1, PSG3, PSG10P) 0.477 1 NA 0.79575536417264 13 0.493006696267001 2 2 0 -5.7644101381547 LTS-009 chr19 43347825 43866567 518743 * c(PRG1, LOC284344, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, PSG10P) 0.395520969802993 7 0.026229754097208 0.830344938481258 196 0.341278213670477 3 2 1 -6.90615419990268 LTS-009 chr19 43866568 43876972 10405 * CD177 NA 0 NA 1.295 1 NA NA NA NA NA LTS-009 chr19 43876973 45117067 1240095 * c(SRRM5, LOC100379224, LOC100505715, ZNF234, CEACAM20, IRGQ, ZNF428, IGSF23, CADM4, ETHE1, ZNF285, LYPD3, ZNF575, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, KCNN4, CEACAM22P, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF576, TEX101, ZNF235) 0.419724582659745 61 0.0543085246254631 1.40832363009823 1936 0.421458410562384 5 3 2 -6.74487032086712 LTS-009 chr19 45117068 45117169 102 * IGSF23 NA 0 NA 1.768 1 NA NA NA NA NA LTS-009 chr19 45117170 48284585 3167416 * c(SNAR-E, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, TOMM40, PPP1R13L, CD3EAP, CLASRP, KPTN, CKM, AP2S1, CLPTM1, PPM1N, KLC3, IGSF23, DACT3, SIX5, IGFL2, ZNF296, DMPK, DMWD, ERCC1, ERCC2, ZC3H4, FBXO46, FOSB, CBLC, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, GPR4, PPP1R37, NKPD1, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, NA NA NA NA NA NA NA NA NA LTS-009 FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IGFL1, CEACAM16, BLOC1S3, BHMG1, IGFL3, BCAM, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, PPP5C, MEIS3, CEACAM19, PTGIR, PNMAL2, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, SELENOW, HIF3A, SLC1A5, SLC8A2, SNRPD2, SNORD23, MIR642A, C5AR1, CCDC61, VASP, MIR769, TRAPPC6A, FKRP, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, ZNF541, NAPA, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 EXOC3L2, LOC93429, GNG8, DHX34) 0.409299990350914 94 0.0644541872633323 1.54108523791148 5320 0.467643355628423 5 3 2 -6.75585243680793 LTS-009 NA NA NA NA LTS-009 chr19 48284586 48304501 19916 * c(TPRX1, SELENOW) NA 0 NA 0.976 1 NA NA NA NA NA LTS-009 chr19 48304502 48593644 289143 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SULT2A1, PLA2G4C) 0.432060080227011 13 0.0396466767126701 1.04478367163788 342 0.404458485545144 4 2 2 -6.78556309484713 LTS-009 chr19 48593645 48598721 5077 * PLA2G4C NA 0 NA 1.499 1 NA NA NA NA NA LTS-009 chr19 48598722 50922337 2323616 * c(SNAR-G1, SNAR-B2, SNAR-D, SNAR-G2, MIR4324, CARD8-AS1, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, IZUMO2, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, FCGRT, ATF5, CARD8, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, NAPSB, ZNF473, IL4I1, FGF21, SNORD35A, SNORD34, SNORD33, NA NA NA NA NA NA NA NA NA LTS-009 SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, SLC6A16, GRIN2D, GYS1, HRC, PRMT1, IRF3, KCNA7, KCNC3, KCNJ14, LHB, LIG1, SIGLEC16, LOC400710, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, SPIB, SULT2B1, TULP2, NR1H2, CA11, TBC1D17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 MYH14, FUZ, MED25, BCL2L12, GRWD1, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, CYTH2, CCDC114, CGB5, CGB7, CGB8, NAPSA, CD37) 0.404889781579401 133 0.0635012266589809 1.55869611144973 5844 0.629555844072011 5 3 2 -6.76232093155972 LTS-009 NA NA NA NA LTS-009 chr19 50922338 50923137 800 * SPIB NA 0 NA 0.985 1 NA NA NA NA NA LTS-009 chr19 50923138 51607904 684767 * c(SNAR-F, KLK11, KLK8, FAM71E1, JOSD2, KLK5, KLK13, EMC10, MGC45922, KLK9, GPR32, C19orf81, KLK3, KLK1, KLK2, KLK14, KLK12, MYBPC2, SHANK1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, SYT3, C19orf48, CTU1, ACPT, LRRC4B, KLK4) 0.406282618435537 33 0.0843778029837447 1.38788904956341 1302 0.493248191612002 5 3 2 -6.74772654111114 LTS-009 chr19 51607905 51628192 20288 * c(SIGLEC9, CTU1) NA 0 NA 1.015 1 NA NA NA NA NA LTS-009 chr19 51628193 52133720 505528 * c(LOC100129083, CLDND2, VSIG10L, C19orf84, ETFB, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, LIM2, IGLON5, NKG7, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, CD33, SIGLEC6) 0.408759851323042 27 0.0475998575496444 1.10841239702215 984 0.421696475617865 3 2 1 -6.86433572770944 LTS-009 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 2.325 1 NA NA NA NA NA LTS-009 chr19 52146303 52207476 61174 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.4064362510471 2 0.00424264068711929 2.00344867373623 49 0.672964671420121 15 9 6 -6.83048112355208 LTS-009 chr19 52207477 52780816 573340 * c(SPACA6, ZNF836, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, PPP2R1A, ZNF350, ZNF649, ZNF613, ZNF614, ZNF577, ZNF616, ZNF766, ZNF432) 0.441294326573795 15 0.0381629338993941 1.28779087263507 807 0.383643199031359 4 2 2 -6.73717175118499 LTS-009 chr19 52780817 53517424 736608 * c(ZNF816-ZNF321P, ZNF816, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF610, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, MIR643, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF766, ZNF468) 0.428389134646983 12 0.0439603816124832 1.10135842302505 848 1.54724633471325 4 2 2 -6.77126692469569 LTS-009 chr19 53517425 53553824 36400 * c(ERVV-2, ERVV-1) 0.416 1 NA 0.568839512580117 53 0.353057859223331 1 1 0 -5.76441015662272 LTS-009 chr19 53553825 54610553 1056729 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, OSCAR, ZNF813, TPM3P9, ZNF525, LOC284379, VSTM1, TFPT, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, TARM1, MIR372, MIR373, NDUFA3, DPRX, ZNF331, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, NA NA NA NA NA NA NA NA NA LTS-009 MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, NLRP12, MYADM, ZNF845) 0.407528495989369 69 0.119392025149187 1.01255699652476 1847 0.445969071730799 3 2 1 -6.75063353308361 LTS-009 NA NA NA NA LTS-009 chr19 54610554 54610667 114 * TFPT NA 0 NA 1.504 1 NA NA NA NA NA LTS-009 chr19 54610668 54726321 115654 * c(LILRB3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.430718307666765 17 0.0384142475100672 1.43812843520627 582 0.435186333996078 7 4 3 -6.76760918738744 LTS-009 chr19 54726322 54726654 333 * c(LILRB3, LILRA6) NA 0 NA 0.784 1 NA NA NA NA NA LTS-009 chr19 54726655 54928075 201421 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA4, LILRA5, LAIR1, TTYH1, LILRA6) 0.394770418219748 12 0.0437160257696295 0.912505903589018 465 0.364786606941654 3 2 1 -6.76259137305076 LTS-009 chr19 54928076 54930271 2196 * TTYH1 NA 0 NA 1.244 1 NA NA NA NA NA LTS-009 chr19 54930272 54974318 44047 * c(LENG8, TTYH1, LENG9) 0.413607132770268 10 0.0296453106653387 1.32899420315598 240 0.349901005102425 5 3 2 -6.73996459540575 LTS-009 chr19 54974319 54974774 456 * LENG9 0.345 1 NA 1.11549217292299 13 0.44270466800896 3 3 0 -5.76442064565322 LTS-009 chr19 54974775 54976702 1928 * c(CDC42EP5, LENG9) NA 0 NA 1.77255905117025 13 0.451028340686662 6 NA NA -5.76441920505343 LTS-009 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.592 1 NA NA NA NA NA LTS-009 chr19 55009101 55536646 527546 * c(RNU6-64P, LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, NLRP7, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR2, GP6, NLRP2, LILRP2, KIR3DX1, NCR1) 0.326781584955774 71 0.0841766156108344 0.938697279870861 1010 0.570903551182569 4 3 1 -6.81739967049548 LTS-009 chr19 55536647 55658088 121442 * c(RDH13, GP6, PPP1R12C, EPS8L1, TNNT1) 0.373554148282025 2 0.0127279220613579 1.52945199529899 310 0.445469779911835 6 4 2 -6.93798416578342 LTS-009 chr19 55658089 55668509 10421 * c(TNNI3, TNNT1) 0.412 1 NA 1.57494959356869 41 0.518721884927211 5 5 0 -5.7645073042432 LTS-009 chr19 55668510 56228321 559812 * c(SBK3, ZNF865, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, ZNF581, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.42903423855213 54 0.0465033981310597 1.51767379918385 1735 0.51081579699885 6 3 3 -6.77798005046371 LTS-009 chr19 56228322 56235326 7005 * NLRP9 NA 0 NA 0.962 1 NA NA NA NA NA LTS-009 chr19 56235327 56573172 337846 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11, NLRP9, RFPL4A, RFPL4AL1) 0.385195291781448 29 0.0635908256232633 0.888190621106596 601 0.451319303111517 3 2 1 -6.75336521648056 LTS-009 chr19 56573173 57175799 602627 * c(ZNF667-AS1, NLRP5, ZNF787, ZFP28, SMIM17, ZNF542P, ZNF582, ZNF583, ZSCAN5B, ZNF582-AS1, ZNF470, ZNF444, ZNF471, ZNF71, ZNF667, ZSCAN5A, GALP, ZNF835) 0.434947491881999 16 0.0382012216209552 1.30040185267142 679 1.21680538471189 4 2 2 -6.74044297023883 LTS-009 chr19 57175800 57175832 33 * ZNF835 NA 0 NA 0.936 1 NA NA NA NA NA LTS-009 chr19 57175833 57670749 494917 * c(MIMT1, PEG3-AS1, ZIM3, ZIM2, DUXA, PEG3, USP29, ZNF835) NA 0 NA 0.926017566452932 437 0.302316971620781 3 NA NA -5.7962716703381 LTS-009 chr19 57670750 57672109 1360 * DUXA NA 0 NA 1.352 1 NA NA NA NA NA LTS-009 chr19 57672110 58458986 786877 * c(ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZNF543, ZNF418, ZNF417, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZNF549, ZNF547, ZIK1, ZNF776, ZNF530, ZNF773, ZNF749, ZNF805, ZNF772, DUXA, ZNF586, ZNF416, VN1R1, ZNF304, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZNF419, ZNF552, ZNF671, ZNF587, ZNF551, ZNF264) 0.431577620060325 43 0.0831379392547205 1.33739565935247 1813 1.31150750699486 4 2 2 -6.73918398737444 LTS-009 chr19 58458987 58469905 10919 * c(ZNF256, C19orf18) NA 0 NA 0.97 1 NA NA NA NA NA LTS-009 chr19 58469906 58511150 41245 * c(C19orf18, ZNF606) 0.453202165352745 7 0.0307129567818814 1.03297517333971 147 0.299141340987815 4 2 2 -6.86722044343373 LTS-009 chr19 58511151 58512626 1476 * ZNF606 0.466 1 NA 1.08534969216284 15 0.224840006607873 3 3 0 -5.76447205593401 LTS-009 chr19 58512627 59082525 569899 * c(A1BG, LOC100128398, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, MZF1, ZNF132, ZNF135, ZNF329, ZNF606, ZBTB45, UBE2M) 0.405383039233594 51 0.0577626244583271 1.00005818829953 1301 0.292301916973446 3 2 1 -6.79369456678082 LTS-009 chr19 59082526 59084001 1476 * c(MZF1-AS1, MZF1) NA 0 NA 0.755631891107142 13 0.0526190956855896 2 NA NA -5.76527002121741 LTS-009 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.462 1 NA 0.475412068467543 35 0.214362404204036 1 1 0 -5.79374778875885 LTS-009 chr20 138126 240237 102112 * c(DEFB127, DEFB129, DEFB128, DEFB132) 0.448831518902055 8 0.0406797159001176 0.563177528124536 68 0.308428324909812 2 1 1 -6.84334325502081 LTS-009 chr20 240238 1559302 1319065 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.46113553142819 46 0.0334406172076272 0.768539669590018 1856 0.256008588066889 2 1 1 -6.9979239710298 LTS-009 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.078 1 NA NA NA NA NA LTS-009 chr20 1569093 1592348 23256 * SIRPB1 NA 0 NA 0.0731767509762411 39 0.0652198193136798 0 NA NA -9.60874701976805 LTS-009 chr20 1592349 1600390 8042 * SIRPB1 NA 0 NA 0.876 1 NA NA NA NA NA LTS-009 chr20 1600391 10594162 8993772 * c(SNORD119, SNAP25-AS1, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PLCB1, PRND, LAMP5, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, NA NA NA NA NA NA NA NA NA LTS-009 FERMT1, PRNP, TMX4, GPCPD1, CPXM1, PAK5, MAVS, EBF4, PTPRA, FASTKD5, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, MKKS, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.450194087476068 162 0.0374693663697302 0.791406676325829 6446 0.298750635474306 2 1 1 -6.7872348290483 LTS-009 NA NA NA NA LTS-009 chr20 10594163 10601944 7782 * SLX4IP NA 0 NA 1.053 1 NA NA NA NA NA LTS-009 chr20 10601945 10654540 52596 * c(SLX4IP, JAG1) 0.5 1 NA 1.03366494821621 226 0.440841430542762 3 3 0 -5.76442866308328 LTS-009 chr20 10654541 11008402 353862 * JAG1 NA 0 NA 0.731 1 NA NA NA NA NA LTS-009 chr20 11008403 21494645 10486243 * c(C20orf78, LOC100130264, LOC100270804, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, MACROD2, BANF2, SCP2D1, ISM1, XRN2, BTBD3, FLRT3, CFAP61, SNX5, LINC00652, LOC339593, INSM1, LINC00493, LINC00851, NKX2-2, NAA20, PCSK2, CRNKL1, ESF1, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, KIZ, OTOR, RALGAPA2, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, NKX2-4, SNRPB2, SNORD17, ZNF133, NDUFAF5, SEL1L2, NA NA NA NA NA NA NA NA NA LTS-009 MGME1, DTD1) 0.453500210778305 63 0.0865431087806496 0.828743070204157 3946 0.307047010720792 2 1 1 -6.85707054441106 LTS-009 NA NA NA NA LTS-009 chr20 21494646 21686266 191621 * NKX2-2 NA 0 NA 0.528 1 NA NA NA NA NA LTS-009 chr20 21686267 23549367 1863101 * c(LINC01432, CST8, CSTL1, CST9L, LINC00261, CST11, CST13P, LINC00656, CD93, LOC284788, NXT1, FOXA2, PAX1, NAPB, GZF1, SSTR4, THBD) 0.449957599956874 10 0.045978739048004 0.704695251398088 752 0.26186641404486 2 1 1 -6.99847383744874 LTS-009 chr20 23549368 23728233 178866 * c(CST9L, CST9, CST1, CST3, CST4) 0.471 1 NA 1.63448518956893 83 0.44083513696634 6 6 0 -5.76534500450379 LTS-009 chr20 23728234 23731412 3179 * CST1 0.284 1 NA 1.02841514723233 14 0.222259871658045 3 3 0 -5.76441134093894 LTS-009 chr20 23731413 25753980 2022568 * c(NANP, CST1, CST2, CST5, NINL, ABHD12, ZNF337, LOC284798, VSX1, FLJ33581, APMAP, PYGB, FAM182B, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.237518115909336 51 0.0442608843376738 1.66367949461968 1247 0.620725768987099 6 5 1 -6.73930399397088 LTS-009 chr20 25753981 25829290 75310 * FAM182B 0.346 1 NA 2.53257093500348 17 1.04149044430961 10 10 0 -5.76444832468098 LTS-009 chr20 25829291 25900230 70940 * FAM182B 0.280665724918771 5 0.0180083314052135 1.85647335091409 11 1.2143265099335 12 9 3 -6.75412897575358 LTS-009 chr20 25900231 26188981 288751 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.302440788334179 19 0.0929506251374906 0.987629348970143 59 0.985179859686648 4 3 1 -6.7604914418119 LTS-009 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.03886523868176 5 0.444008445865616 3 NA NA -5.76441016315979 LTS-009 chr20 29625845 29625876 32 * FRG1BP 0.263 1 NA 1.623 1 NA NA NA NA NA LTS-009 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.350250350566075 14 0.0829603705206472 0.96689142109163 47 0.508767840968452 6 4 2 -6.77424908966652 LTS-009 chr20 29652192 29891242 239051 * c(DEFB115, DEFB116, FRG1BP) 0.406 1 NA 1.06529601332079 21 0.737642725495338 3 3 0 -5.76484942191257 LTS-009 chr20 29891243 30053429 162187 * c(DEFB118, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124) 0.475522755808363 3 0.027712812921102 1.19948548123694 100 0.417817144287553 4 2 2 -7.62490925338787 LTS-009 chr20 30053430 30060650 7221 * DEFB124 NA 0 NA 2.281 1 NA NA NA NA NA LTS-009 chr20 30060651 33470758 3410108 * c(MCTS2P, MIR3193, MIR4755, HM13-AS1, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB124, GGT7, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, ASIP, BPIFA1, CDK5RAP1, PLAGL2, ACSS2, TP53INP2, BCL2L1, NECAB3, SNTA1, NA NA NA NA NA NA NA NA NA LTS-009 MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.437990287482103 90 0.0786912010240138 1.88176552421633 4699 0.653353664896565 7 4 3 -6.7457825367355 LTS-009 NA NA NA NA LTS-009 chr20 33470759 33496647 25889 * ACSS2 NA 0 NA 3.944 1 NA NA NA NA NA LTS-009 chr20 33496648 33589356 92709 * c(MIR499B, GSS, ACSS2, MIR499A, MYH7B) 0.361949628000413 2 0.00848528137423858 2.61076716563201 375 0.661883607853987 17 11 6 -6.80461884347889 LTS-009 chr20 33589357 33589748 392 * MYH7B NA 0 NA 1.982 1 NA NA NA NA NA LTS-009 chr20 33589749 40179920 6590172 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, CEP250, VSTM2L, SNHG11, FAM83C, SLC32A1, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, ADIG, EPB41L1, DLGAP4, ZHX3, SAMHD1, AAR2, PPP1R16B, TRPC4AP, SNORA71B, SNORA71A, GHRH, LOC339568, ARHGAP40, EIF6, SNHG17, LBP, NNAT, PHF20, SCAND1, ERGIC3, PLCG1, UQCC1, EDEM2, C20orf24, CTNNBL1, RALGAPB, NDRG3, MYH7B, RPRD1B, NA NA NA NA NA NA NA NA NA LTS-009 RBL1, TGIF2, DHX35, RPN2, MANBAL, NORAD, LPIN3, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, TOP1, ACTR5, DSN1, FAM83D, GDF5, SLA2, CHD6, KIAA1755, CPNE1, EMILIN3, NFS1, RBM39, TTI1, MAFB) 0.441378269996508 96 0.0598161950727598 1.8218006533992 6869 0.598537635649415 6 3 3 -6.78356489082769 LTS-009 NA NA NA NA LTS-009 chr20 40179921 40180005 85 * CHD6 NA 0 NA 1.393 1 NA NA NA NA NA LTS-009 chr20 40180006 43252856 3072851 * c(ADA, MIR3646, OSER1-AS1, SGK2, SERINC3, PTPRT, PKIG, FITM2, R3HDML, GTSF1L, L3MBTL1, HNF4A, MYBL2, IFT52, OSER1, JPH2, SRSF6, GDAP1L1, TTPAL, CHD6, TOX2) 0.436493796377181 29 0.120764151533336 1.52328128481036 1775 0.528176115506802 5 3 2 -6.75641541521641 LTS-009 chr20 43252857 43252915 59 * ADA 0.414 1 NA 2.277 1 NA NA NA NA NA LTS-009 chr20 43252916 44803471 1550556 * c(ADA, ACOT8, STK4-AS1, EPPIN-WFDC6, WFDC2, SPINT3, TOMM34, UBE2C, RBPJL, DNTTIP1, WFDC12, SPATA25, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, WFDC5, WFDC13, WFDC11, WFDC9, TP53TG5, WFDC10B, KCNS1, SPINT4, MMP9, PIGT, PI3, PLTP, CTSA, DBNDD2, EPPIN, SLC12A5, NCOA5, KCNK15, SDC4, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLPI, STK4, TNNC2, YWHAB, SYS1-DBNDD2, LINC01260, PABPC1L, MATN4, WISP2, SYS1, NA NA NA NA NA NA NA NA NA LTS-009 WFDC8, SNX21, ZSWIM1, CD40) 0.438936420947424 91 0.0623400928735848 1.75533213589124 3036 0.601675734616764 6 3 3 -6.73537323149121 LTS-009 NA NA NA NA LTS-009 chr20 44803472 44803550 79 * CDH22 NA 0 NA 2.058 1 NA NA NA NA NA LTS-009 chr20 44803551 52553610 7750060 * c(SNORD12B, ZNF663P, LOC100131496, MIR3194, MIR3616, ATP9A, TRERNA1, CEBPB, ARFGEF2, TP53RK, OCSTAMP, TSHZ2, FAM65C, CSE1L, EYA2, SLC9A8, ADNP, ZMYND8, SNORD12C, MOCS3, LINC00494, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, SUMO1P1, ZFAS1, NFATC2, SLC35C2, BCAS4, DDX27, ZNF334, ZFP64, RNF114, SULF2, SALL4, ZNFX1, PTGIS, PREX1, PTPN1, ELMO2, CDH22, SLC13A3, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, NA NA NA NA NA NA NA NA NA LTS-009 MKRN7P, ZNF217, SLC2A10, NCOA3, PARD6B, DPM1, B4GALT5, SPATA2) 0.440431382840657 83 0.0790627064337767 1.90164237575628 5038 0.696589071567684 7 4 3 -6.74996156737738 LTS-009 NA NA NA NA LTS-009 chr20 52553611 52554492 882 * character(0) 0.469 1 NA 1.80719093668303 19 0.208407158849328 6 6 0 -5.7644529281423 LTS-009 chr20 52554493 54572908 2018416 * c(MIR4756, CBLN4, CYP24A1, PFDN4, DOK5, BCAS1) 0.461956061447616 17 0.0376028002711938 1.92565654857757 371 0.717983560208489 8 4 4 -6.97723367795198 LTS-009 chr20 54572909 57617932 3045024 * c(MIR298, MIR4325, MTRNR2L3, SLMO2-ATP5E, MIR4532, MIR5095, FAM210B, C20orf85, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, APCDD1L, FAM209A, SPO11, GNAS, FAM209B, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PPP4R1L, RBM38, PMEPA1, CASS4, RAB22A, BMP7, AURKA, TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, STX16, VAPB) 0.451759404517462 73 0.063965188044615 1.62217225580573 2783 0.65193932722805 6 3 3 -6.76668309804951 LTS-009 chr20 57617933 58342387 724455 * c(LOC100506384, PHACTR3, ZNF831, EDN3) 0.462528865721341 6 0.0343569498064075 1.10955825704133 307 0.383352306596887 4 2 2 -7.04163250515857 LTS-009 chr20 58342388 58348264 5877 * PHACTR3 NA 0 NA 1.653 1 NA NA NA NA NA LTS-009 chr20 58348265 61943418 3595154 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1257, MIR4326, MIR3196, MIR4758, MIR4533, LINC00659, OGFR-AS1, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, PHACTR3, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, LSM14B, C20orf166-AS1, SS18L1, MTG2, SLCO4A1, C20orf197, MIR646HG, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, PPP1R3D, MRGBP, ARFGAP1, PSMA7, COL20A1, CDH26, RPS21, SLC17A9, NA NA NA NA NA NA NA NA NA LTS-009 LOC63930, FAM217B, TAF4, HAR1A, HAR1B, BIRC7, CABLES2, OSBPL2) 0.457641224106455 96 0.0715639566426485 1.62277188409657 3753 0.538930285131774 6 3 3 -6.79041400488226 LTS-009 NA NA NA NA LTS-009 chr20 61943419 62152980 209562 * c(CHRNA4, EEF1A2, KCNQ2, COL20A1, PPDPF) 0.470867439803988 11 0.0251356320787841 1.28758103506676 407 0.394366394593943 4 2 2 -7.56619285143207 LTS-009 chr20 62152981 62872290 719310 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, PTK6, SRMS, TCEA2, MIR647, TPD52L2, FNDC11, PPDPF, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.471968675722876 52 0.0207007971225336 1.69793845593741 2195 0.52541906956716 6 3 3 -7.95889828699408 LTS-009 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.77886418902437 123 0.857077874839806 6 NA NA -5.76454462614445 LTS-009 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.233 1 NA 0.297633789138624 23 0.315929339926014 0 0 0 -5.7739342696446 LTS-009 chr21 9907203 11059877 1152675 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.360599016431042 30 0.0895244717073648 0.633070805894121 168 0.450843143049793 1 1 0 -7.02896238611428 LTS-009 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.02608925062145 5 0.61910193021828 3 NA NA -5.76441080814467 LTS-009 chr21 14745307 14756794 11488 * character(0) 0.305 1 NA 0.563132241730301 9 0.477012607566905 1 1 0 -5.76441343477766 LTS-009 chr21 14756795 15966186 1209392 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.221266990756374 13 0.024434108148767 0.665821343161944 400 0.353812020157271 2 2 0 -6.95101903802705 LTS-009 chr21 15966187 15966248 62 * c(SAMSN1-AS1, LOC388813) NA 0 NA 0.768 1 NA NA NA NA NA LTS-009 chr21 15966249 22912031 6945783 * c(LINC01549, RNU6-67P, SAMSN1-AS1, BTG3, CHODL, CXADR, C21orf91-OT1, USP25, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, NCAM2, CHODL-AS1, C21orf91, TMPRSS15, NRIP1) 0.175411710044296 25 0.0575456919905102 0.847305373811825 1079 0.424819016073951 2 2 0 -7.09388165024099 LTS-009 chr21 22912032 24837178 1925147 * c(D21S2088E, LINC00317, NCAM2, LINC00308) NA 0 NA 0.882087929250319 75 0.418256914882285 2 NA NA -5.83347674681481 LTS-009 chr21 26734871 26961086 226216 * c(MIR155HG, LINC00515, MIR155, LINC00158, MRPL39) 0.445 1 NA 1.44129030930832 25 0.71050103917353 5 5 0 -5.76456520479464 LTS-009 chr21 26961087 31538258 4577172 * c(GRIK1-AS2, MIR4759, RWDD2B, USP16, CCT8, ADAMTS5, CYYR1, LINC00161, LINC00189, LINC00314, GABPA, LTN1, CLDN17, GRIK1, N6AMT1, APP, ATP5J, LINC00113, MRPL39, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, ADAMTS1) 0.450373924100946 26 0.129692227392985 1.27110711010529 1840 0.542448576734246 4 2 2 -6.74031527037108 LTS-009 chr21 31538259 32491064 952806 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.433402771726978 24 0.132765211743421 1.01148702773599 553 0.48988114340724 3 2 1 -6.80501504397224 LTS-009 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.487 1 NA NA NA NA NA LTS-009 chr21 32491171 33887545 1396375 * c(LINC00159, HUNK, MIS18A, MRAP, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, URB1-AS1, URB1) 0.466097842892853 33 0.0308593154247603 1.42549039673487 1004 0.8461258815583 4 2 2 -7.18108487431013 LTS-009 chr21 33887546 33887558 13 * EVA1C NA 0 NA 1.125 1 NA NA NA NA NA LTS-009 chr21 33887559 40250766 6363208 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, OLIG2, DSCR4, DSCR3, LINC00310, OLIG1, TCP10L, RCAN1, DYRK1A, ERG, ETS2, MORC3, CLDN14, DSCR9, DSCR10, GART, DONSON, HLCS, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, PIGP, RIPPLY3, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, SETD4, CLIC6, DNAJC28, C21orf62, C21orf59, EVA1C, ITSN1, SIM2, MRPS6, SLC5A3, NA NA NA NA NA NA NA NA NA LTS-009 SON, TTC3, LINC01548, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.458062283909797 107 0.0545317946565175 1.26504032329928 5416 0.806950542225943 4 2 2 -6.80573679898061 LTS-009 NA NA NA NA LTS-009 chr21 40250767 40547329 296563 * character(0) 0.268 1 NA 1.08402621175504 17 0.288745728259719 3 3 0 -5.77164374518828 LTS-009 chr21 40547330 40555795 8466 * PSMG1 0.239170940198724 2 0.0544472221513641 1.01934436508208 42 0.298609145209566 6 5 1 -6.75413039034016 LTS-009 chr21 40555796 41719919 1164124 * c(MIR4760, BRWD1-AS1, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, NA, HMGN1, PCP4, BRWD1, SH3BGR, WRB) 0.223418890169268 28 0.037462415027365 0.787754909726384 1119 0.323296140805627 2 2 0 -6.76372685368639 LTS-009 chr21 41719920 41725410 5491 * DSCAM NA 0 NA 1.045 1 NA NA NA NA NA LTS-009 chr21 41725411 45168884 3443474 * c(MIR3197, DSCAM-AS1, DSCAM-IT1, WDR4, HSF2BP, LINC00313, CRYAA, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, BACE2, C2CD2, LINC00323, LINC00319, MX1, MX2, NDUFV3, ZBTB21, PDE9A, PKNOX1, UBASH3A, SLC37A1, LINC00112, LINC00111, FAM3B, RIPK4, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TMPRSS2, U2AF1, PDXK, CBS, RSPH1, UMODL1, ABCG1) 0.212137954418187 77 0.0652195566324044 0.902544373308855 3037 0.440922725061549 2 2 0 -6.89782241373752 LTS-009 chr21 45168885 45177869 8985 * PDXK 0.444 1 NA 1.02687262560322 69 0.236406641553284 3 3 0 -5.76441174748812 LTS-009 chr21 45177870 45855147 677278 * c(CSTB, ICOSLG, AATBC, DNMT3L, AIRE, PFKL, AGPAT3, PWP2, TRAPPC10, TRPM2, C21orf2, C21orf33, PDXK, RRP1) 0.255025722651065 14 0.0587333329175554 0.85976898580194 1460 0.28046657273748 2 2 0 -7.02987695241051 LTS-009 chr21 45855148 45856913 1766 * TRPM2 NA 0 NA 0.723 1 NA NA NA NA NA LTS-009 chr21 45856914 46078345 221432 * c(LRRC3-AS1, TSPEAR-AS2, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, TSPEAR, TRPM2, LRRC3) 0.32041256824654 29 0.0707484964765654 0.652481058885314 526 0.241825734799309 1 1 0 -6.82162639554158 LTS-009 chr21 46078346 46086827 8482 * c(KRTAP12-2, TSPEAR) 0.24 1 NA 0.611018659102293 15 0.0922614297990847 1 1 0 -5.76743700759542 LTS-009 chr21 46086828 46131515 44688 * c(KRTAP12-2, KRTAP12-1, KRTAP10-12, TSPEAR) 0.249036346516052 4 0.0556978455597701 0.566530225311711 41 0.129010705738407 2 2 0 -7.12941718115698 LTS-009 chr21 46131516 46188936 57421 * UBE2G2 NA 0 NA 1.143 1 NA NA NA NA NA LTS-009 chr21 46188937 48084989 1896053 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, ITGB2, PICSAR, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.236349826526731 106 0.0535331597365097 0.863638297492357 2900 0.51512159526669 2 2 0 -6.85529053607073 LTS-009 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 1.298 1 NA NA NA NA NA LTS-009 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.494 1 NA 0.897198052195496 5 0.237120855261615 2 2 0 -5.87428739989581 LTS-009 chr22 16887896 17156550 268655 * c(CCT8L2, ANKRD62P1-PARP4P3, TPTEP1) 0.408921723808885 2 0.0947523086789973 0.454372877192126 132 0.181843754982129 0 0 0 -7.1613646848375 LTS-009 chr22 17156551 17156758 208 * TPTEP1 NA 0 NA 0.875 1 NA NA NA NA NA LTS-009 chr22 17156759 18032817 876059 * c(CECR7, CECR5-AS1, GAB4, XKR3, IL17RA, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1) 0.234540464752355 29 0.0578411277475924 0.675515895624886 839 0.2692394459112 2 2 0 -6.98942464338967 LTS-009 chr22 18032818 19955261 1922444 * c(FLJ41941, MIR3198-1, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, COMT, LINC00895, TSSK2, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, CECR2, GSC2, TUBA8, ATP6V1E1, GNB1L, PEX26, PRODH, MICAL3, BID, MRPL40, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR2) 0.214235449440132 46 0.0516395955259814 0.824271493580215 2735 0.338100515187008 2 2 0 -6.74555686841465 LTS-009 chr22 19955262 19956076 815 * COMT NA 0 NA 1.247 1 NA NA NA NA NA LTS-009 chr22 19956077 20137038 180962 * c(MIR1306, MIR3618, TANGO2, COMT, TRMT2A, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, RANBP1) 0.168458351966209 19 0.0458115259125119 1.19158514223499 650 0.437026365954651 3 3 0 -6.74664223545048 LTS-009 chr22 20137039 20137046 8 * CCDC188 0.193 1 NA 0.491 1 NA NA NA NA NA LTS-009 chr22 20137047 21805742 1668696 * c(MIR1286, TUBA3FP, CRKL, LINC00896, AIFM3, HIC2, POM121L4P, LOC284865, POM121L8P, SERPIND1, CCDC188, LRRC74B, BCRP2, THAP7-AS1, P2RX6P, MED15, PI4KA, RTN4R, SLC7A4, TMEM191B, PI4KAP1, NA, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, DGCR6L, RIMBP3, SCARF2, P2RX6, SNAP29) 0.230472072529752 64 0.0650839640082851 0.832530227222613 1868 0.309453310146229 2 2 0 -6.78779333738174 LTS-009 chr22 21805743 21821848 16106 * c(HIC2, TMEM191C) NA 0 NA 1.252 1 NA NA NA NA NA LTS-009 chr22 21821849 21947240 125392 * c(PI4KAP2, TMEM191C, UBE2L3) 0.417 1 NA 1.73243945815711 39 1.00435356238359 6 6 0 -5.76443182835998 LTS-009 chr22 21947241 21947338 98 * UBE2L3 NA 0 NA 0.711 1 NA NA NA NA NA LTS-009 chr22 21947339 24342396 2395058 * c(DDTL, MIR301B, IGLL5, ZNF280A, ZNF280B, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, YPEL1, VPREB3, IGLL1, CHCHD10, MIR130B, MIF, MMP11, DRICH1, MAPK1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, TOP3B, GGTLC2, GUSBP11, DERL3, RAB36, PPM1F, BMS1P20) 0.208623795623341 97 0.0632676465746339 0.769511433640227 2768 0.305758663752898 2 2 0 -6.75653366934456 LTS-009 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.318 1 NA NA NA NA NA LTS-009 chr22 24345596 24431946 86351 * c(CABIN1, GSTTP1, GSTT1, LOC391322, GSTTP2) NA 0 NA 0.420426362945619 60 0.145076261846701 0 NA NA -5.86691185827863 LTS-009 chr22 24431947 25082723 650777 * c(ADORA2A, SPECC1L, CABIN1, GGT1, GGT5, POM121L9P, LRRC75B, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, GUCD1) 0.200561034855011 17 0.0637887137352682 0.833049841493682 930 0.293514468257916 2 2 0 -6.77314405130574 LTS-009 chr22 25082724 25088075 5352 * character(0) NA 0 NA 0.52 1 NA NA NA NA NA LTS-009 chr22 25088076 26343790 1255715 * c(LOC100128531, SGSM1, CRYBB2, CRYBB2P1, CRYBB3, GRK3, TMEM211, PIWIL3, TOP1P2, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.222160651908211 19 0.0821997993765426 0.72424130564596 943 0.279024724315764 2 2 0 -6.82239779688732 LTS-009 chr22 26343791 26829349 485559 * c(SEZ6L, ASPHD2, MYO18B) 0.30569065202105 2 0.120208152801713 0.546141502319258 240 0.169916090334414 1 1 0 -6.75105205740541 LTS-009 chr22 26829350 29755888 2926539 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, AP1B1, EWSR1, TTC28, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, SRRD, MN1, MIAT, ASPHD2, XBP1, KREMEN1, ZNRF3, TPST2, HPS4) 0.230128615369629 30 0.0415058644243099 0.856076945114993 2142 0.3127936253817 2 2 0 -6.90546308346973 LTS-009 chr22 29755889 29755942 54 * AP1B1 NA 0 NA 0.656 1 NA NA NA NA NA LTS-009 chr22 29755943 29902290 146348 * c(RFPL1S, AP1B1, NEFH, RFPL1) NA 0 NA 0.605833879342429 155 0.209045930573243 1 NA NA -5.77228730144679 LTS-009 chr22 29902291 29902694 404 * character(0) NA 0 NA 1.16 1 NA NA NA NA NA LTS-009 chr22 29902695 32341587 2438893 * c(MIR3200, MIR3928, SF3A1, PIK3IP1, SELENOM, HORMAD2, DUSP18, MORC2-AS1, CABP7, RNF215, MORC2, PES1, SEC14L2, PATZ1, PISD, OSBP2, PRR14L, C22orf24, SEC14L3, INPP5J, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, LIMK2, DRG1, NF2, OSM, PLA2G3, MTFP1, TUG1, CCDC157, ZMAT5, EIF4ENIF1, SMTN, GATSL3, TCN2, SEC14L6, YWHAH, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, RNF185, GAL3ST1, DEPDC5, SFI1) 0.225275473454219 89 0.0528741543686922 0.817009144612468 4435 0.355419017868087 2 2 0 -6.76346738568289 LTS-009 chr22 32341588 32343369 1782 * YWHAH NA 0 NA 0.476 1 NA NA NA NA NA LTS-009 chr22 32343370 35690532 3347163 * c(HMGXB4, LARGE-AS1, MIR4764, RFPL3S, RFPL3, RFPL2, C22orf42, AP1B1P1, BPIFC, FBXO7, LOC339666, RTCB, SLC5A1, SLC5A4, TIMP3, YWHAH, SYN3, ISX, LARGE1) 0.185632674238599 23 0.0499420612927221 0.713257674686767 1251 0.272530757992778 2 2 0 -7.24222020430434 LTS-009 chr22 35690533 35690566 34 * HMGXB4 NA 0 NA 1.18 1 NA NA NA NA NA LTS-009 chr22 35690567 35950094 259528 * c(HMGXB4, TOM1, MIR3909, RASD2, HMOX1, MCM5) 0.21715991772456 9 0.086002906927615 0.935540498420715 355 0.316835072423634 2 2 0 -6.7736875459669 LTS-009 chr22 35950095 36002786 52692 * character(0) NA 0 NA 0.772 1 NA NA NA NA NA LTS-009 chr22 36002787 36678550 675764 * c(RBFOX2, APOL2, MB, MYH9, APOL6, APOL5, APOL4, APOL3, APOL1) 0.192312597196425 17 0.067453469801303 0.732311761010459 673 0.24733040119326 2 2 0 -6.84582923439748 LTS-009 chr22 36678551 36737618 59068 * MYH9 NA 0 NA 1.09055444446339 199 0.314936942662997 3 NA NA -5.7658851314048 LTS-009 chr22 36737619 36744908 7290 * MYH9 NA 0 NA 0.517 1 NA NA NA NA NA LTS-009 chr22 36744909 46658189 9913281 * c(LOC100130899, NDUFA6-AS1, LINC00899, MIR1249, MIR1281, MIR3619, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, PACSIN2, PHF21B, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, NA NA NA NA NA NA NA NA NA LTS-009 CDPF1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, TTLL12, ZC3H7B, KIAA0930, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, ARHGAP8, SERHL2, XRCC6, CBY1, SUN2, TTLL1, SAMM50, ATXN10, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, CARD10, PARVB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 H1F0, TEX33, LINC00634, IL2RB, KCNJ4, OGFRP1, LINC00207, LGALS1, LGALS2, LOC400927, MIRLET7BHG, MIRLET7A3, MIRLET7B, MIR33A, LINC00229, MFNG, MGAT3, MPST, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, SNU13, ACO2, EIF3L, PDGFB, PMM1, A4GALT, POLR2F, MIEF1, PPARA, FAM118A, PRR34, PRR5-ARHGAP8, PRR5, SEPT3, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, BIK, XPNPEP3, PARVG, FAM227A, EFCAB6, SOX10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 SREBF2, SSTR3, ST13, TCF20, TEF, TSPO, MIR658, MIR659, TST, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, SCUBE1, PNPLA3, L3MBTL2, PLA2G6, LDOC1L, POLDIP3, C22orf23, GALR3, PHF5A, KIAA1644, MICALL1, EIF3D, CACNA1I, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.2285362909644 307 0.0554891262590875 0.826763197226931 14386 0.307865148928361 2 2 0 -6.85812029356857 LTS-009 NA NA NA NA LTS-009 chr22 46658190 47433132 774943 * c(PKDREJ, GTSE1-AS1, GRAMD4, TBC1D22A, GTSE1, TTC38, TRMU, CERK, CELSR1) 0.197643977647161 31 0.0615776457134641 0.911791013552377 960 0.279533983438714 2 2 0 -6.88850366463312 LTS-009 chr22 47433133 47507321 74189 * TBC1D22A NA 0 NA 0.604 1 NA NA NA NA NA LTS-009 chr22 47507322 50020722 2513401 * c(LINC01310, MIR3201, MIR4535, TBC1D22A, FAM19A5, LOC284933, C22orf34, LINC00898) 0.244906937044752 7 0.036228113261336 0.638879256847932 304 0.270551935378915 2 2 0 -7.97476069803867 LTS-009 chr22 50020723 50050993 30271 * C22orf34 NA 0 NA 1.113 1 NA NA NA NA NA LTS-009 chr22 50050994 50961286 910293 * c(MLC1, PLXNB2, BRD1, NCAPH2, C22orf34, IL17REL, DENND6B, PIM3, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, TUBGCP6, NA, LMF2, PPP6R2, ZBED4) 0.208310633896767 77 0.0370696910682951 0.855883757055362 2452 0.310513030325245 2 2 0 -6.78242807176732 LTS-009 chr22 50961287 51183255 221969 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, MAPK8IP2, NCAPH2, CHKB-CPT1B, ARSA, ODF3B, ACR, SYCE3, SHANK3, SCO2) 0.31024354363572 18 0.0504875898813376 0.596853123565116 737 0.170121661610103 1 1 0 -6.76498496346928 LTS-009 chr22 51183256 51183804 549 * ACR NA 0 NA 1.03171401604967 9 0.751333832445856 3 NA NA -5.76441017968411 LTS-009 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.248 1 NA NA NA NA NA LTS-009 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.373698470171091 65 0.127024982400495 0 NA NA -5.76870176086595 LTS-009 chrX 2699993 2733109 33117 * XG 0.333 1 NA 0.515235618066276 43 0.168016416036011 1 1 0 -5.77134644138508 LTS-009 chrX 2733110 10059003 7325894 * c(LINC01546, CLDN34, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.301111061298468 48 0.0867394581450148 0.541978768127002 1845 0.22109010815508 1 1 0 -6.93928598533654 LTS-009 chrX 10059004 10062085 3082 * WWC3 NA 0 NA 0.659 1 NA NA NA NA NA LTS-009 chrX 10062086 11793509 1731424 * c(MSL3, CLCN4, AMELX, HCCS, ARHGAP6, MID1, WWC3) 0.304538430846368 11 0.0472598234136662 0.625640354737835 891 0.227053685397664 1 1 0 -6.91297261956723 LTS-009 chrX 11793510 12993243 1199734 * c(MSL3, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, FRMPD4) 0.25 1 NA 0.454017650174031 511 0.130938751396091 1 1 0 -7.38029803994969 LTS-009 chrX 12993244 12993286 43 * TMSB4X 0.32 1 NA 0.669 1 NA NA NA NA NA LTS-009 chrX 12993287 24330156 11336870 * c(GS1-600G8.3, PHKA2-AS1, LINC01203, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, CA5B, BEND2, PTCHD1, ASB11, ASB9, ZNF645, MOSPD2, DDX53, SUPT20HL2, TCEANC, FAM9C, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, EGFL6, GLRA2, GPM6B, GRPR, SH3KBP1, CA5BP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PIGA, PPEF1, NA NA NA NA NA NA NA NA NA LTS-009 GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, TRAPPC2, MAGEB17, BMX, SMS, CDKL5, TMSB4X, LOC729609, ZFX, APOO, S100G, KLHL15, ZRSR2, OFD1, PIR, INE2, AP1S2, REPS2, ATXN3L, RAB9A, SYAP1) 0.305711169387881 41 0.0737328152777343 0.55462246850547 6786 0.20057675410525 1 1 0 -6.84518318688395 LTS-009 NA NA NA NA LTS-009 chrX 24330157 24382246 52090 * c(SUPT20HL1, SUPT20HL2) NA 0 NA 0.33995414226224 66 0.13007385386467 0 NA NA -5.76449168439748 LTS-009 chrX 24382247 31187682 6805436 * c(SUPT20HL1, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB6, ARX, DMD, NR0B1, TAB3, GK, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, PDK3, FTHL17, POLA1, SCARNA23, CXorf21, PCYT1B) 0.290859017516387 18 0.0485186104042104 0.483823589368595 1544 0.194672865090041 1 1 0 -8.75364341485379 LTS-009 chrX 31187683 31190368 2686 * DMD NA 0 NA 0.27 1 NA NA NA NA NA LTS-009 chrX 31190369 31497222 306854 * DMD 0.43 1 NA 0.330475601253633 86 0.0754553029016391 0 0 0 -5.80359051590304 LTS-009 chrX 31497223 31514889 17667 * DMD NA 0 NA 0.753 1 NA NA NA NA NA LTS-009 chrX 31514890 49066389 17551500 * c(SNORA11C, HDAC6, LOC100132831, UXT-AS1, MIR4769, PQBP1, ATP6AP2, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, FUNDC1, MAGEB16, CYBB, FAM47A, CXorf38, DDX3X, FAM47B, NA, DMD, ELK1, FTSJ1, HYPM, GATA1, GPR82, GPKOW, PCSK1N, SSX6, SSX9, GPR34, LINC01281, CFAP47, ERAS, ZNF81, LANCL3, MPC1L, ARAF, KCND1, SPACA5, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, FTH1P18, FAM47C, NA NA NA NA NA NA NA NA NA LTS-009 NDP, TBC1D25, OTC, CDK16, CFP, PLP2, NDUFB11, BCOR, OTUD5, KRBOX4, PRRG1, CHST7, GRIPAP1, ZNF630, MID1IP1, RBM3, NYX, RP2, RPGR, DUSP21, ZNF674, NA, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, SYP, DYNLT3, TFE3, TIMP1, TSPAN7, LINC01545, UBA1, SLC35A2, KDM6A, WAS, XK, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, EFHC2, PPP1R2P9, USP11, USP9X, RBM10, TMEM47, SRPX, UXT, SLC9A7, INE1, CASK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 CCDC120, RGN, SLC38A5, MED14, SYTL5, JADE3) 0.270677234019853 54 0.0836326114426399 0.565716252286688 8426 0.201661342188096 1 1 0 -6.81810166545018 LTS-009 NA NA NA NA LTS-009 chrX 49066390 49066488 99 * CACNA1F NA 0 NA 0.537 1 NA NA NA NA NA LTS-009 chrX 49066489 52896243 3829755 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, CCDC22, USP27X, MIR188, SPANXN5, FOXP3, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, GAGE12J, GAGE2D, GAGE2A, CACNA1F, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.264259576797698 9 0.102082210878183 0.495455898173475 1669 0.192274074698591 1 1 0 -7.81198990552794 LTS-009 chrX 52896244 53105648 209405 * c(XAGE3, GPR173, FAM156B) NA 0 NA 0.745 1 NA NA NA NA NA LTS-009 chrX 53105649 54096973 991325 * c(HUWE1, RIBC1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, GPR173, FAM120C, TSPYL2, KDM5C, SMC1A) 0.198546146508488 5 0.140090328003042 0.578249277521897 1649 0.220449515698475 1 1 0 -7.03920400244493 LTS-009 chrX 54096974 55652342 1555369 * c(MTRNR2L10, MIR4536-1, MAGED2, FOXR2, PAGE3, USP51, PAGE2, ALAS2, FGD1, APEX2, MAGEH1, ITIH6, PAGE2B, PFKFB1, GNL3L, FAM120C, WNK3, SNORA11, TRO, TSR2, FAM104B, PAGE5) 0.245795586461096 13 0.101775897605147 0.495486572609878 1561 0.169722853728689 1 1 0 -7.46670238651779 LTS-009 chrX 55652343 56311132 658790 * c(RRAGB, KLF8, FOXR2) NA 0 NA 0.484968799967934 141 0.171578453643844 1 NA NA -6.08932125530537 LTS-009 chrX 56311133 56590030 278898 * c(KLF8, UBQLN2) NA 0 NA 1.234 1 NA NA NA NA NA LTS-009 chrX 56590031 57937169 1347139 * c(FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA) NA 0 NA 0.627613183911594 445 0.251690456291126 1 NA NA -5.88444638731532 LTS-009 chrX 61999880 63488026 1488147 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, MTMR8, LINC01278) 0 1 NA 0.502261753243163 431 0.217661071233719 1 1 0 -6.04459353757371 LTS-009 chrX 63488027 65835962 2347936 * c(VSIG4, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, HEPH) 0.275181430451936 4 0.195485719853565 0.442055088007165 853 0.159649384477822 1 1 0 -9.07403118282528 LTS-009 chrX 66764481 71934101 5169621 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, CITED1, NONO, OPHN1, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, BCYRN1, RPS4X, PJA1, TAF1, OGT, SLC7A3, ZMYM3, ACRC, STARD8, MED12) 0.302274704824145 36 0.0733614826926034 0.535254251265543 4373 0.19515526227861 1 1 0 -7.02391845938537 LTS-009 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.075 1 NA NA NA NA NA LTS-009 chrX 72066651 72299208 232558 * c(PABPC1L2A, PABPC1L2B, FAM226B) NA 0 NA 0.224174692440234 82 0.150245644992476 0 NA NA -6.70603859315137 LTS-009 chrX 72299209 90693597 18394389 * c(MIR374B, UBE2DNL, FTX, MIR4328, MIR374C, CDX4, CYSLTR1, CHM, DACH2, COX7B, MAP2K4P1, APOOL, HDX, UPRT, MAGEE2, PABPC5, CYLC1, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, RPS6KA6, P2RY10, LPAR4, TTC3P1, PABPC1L2A, KIAA2022, SATL1, ZCCHC13, PGAM4, MIR374A, NAP1L2, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, CPXCR1, CHIC1, ATP7A, POU3F4, ATRX, JPX, KLHL4, MAGEE1, SH3BGRL, NAP1L6, SLC16A2, MIR545, MIR421, NA NA NA NA NA NA NA NA NA LTS-009 XIST, ZNF711, HMGN5, POF1B, MAGT1, GPR174, FGF16, TGIF2LX, TSIX, ITM2A) 0.278290823068496 67 0.0944989261184463 0.504455874044897 4766 0.227666011252488 1 1 0 -8.89079238116421 LTS-009 NA NA NA NA LTS-009 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.313 1 NA NA NA NA NA LTS-009 chrX 91066177 91878109 811933 * PCDH11X 0.304 1 NA 0.357297319479593 297 0.479227241076192 0 0 0 -5.76835036698614 LTS-009 chrX 91878110 99924361 8046252 * c(DIAPH2, SRPX2, PCDH11X, FAM133A, RPA4, XRCC6P5, NAP1L3, PCDH19, TNMD, BRDTP1, TSPAN6) 0.298067727881485 6 0.0229172424170099 0.589899686682316 769 0.197069760828818 1 1 0 -6.89768684309244 LTS-009 chrX 99924362 99925828 1467 * SRPX2 NA 0 NA 0.439 1 NA NA NA NA NA LTS-009 chrX 99925829 101609367 1683539 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, CSTF2, TCEAL6, TIMM8A, DRP2, CENPI, NOX1, GLA, SRPX2, HNRNPH2, BEX5, ARL13A, XKRX, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, TMEM35A, RPL36A, BTK, TRMT2B, ZMAT1, SYTL4, ARMCX2) 0.26205729105864 23 0.12220427723895 0.484676636515013 1838 0.209384972328083 1 1 0 -7.33371769803004 LTS-009 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.041 1 NA NA NA NA NA LTS-009 chrX 101615285 101625090 9806 * character(0) NA 0 NA 0.18069648851117 41 0.174398971383183 0 NA NA -5.84228004883189 LTS-009 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.455 1 NA NA NA NA NA LTS-009 chrX 101768565 135333841 33565277 * c(ZBTB33, MIR450B, LINC00633, TEX13C, PRR32, LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, LINC00629, ARMCX5-GPRASP2, MIR3978, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ACTRT1, GPR119, RBMXL3, DOCK11, RAB40A, AMOT, ARHGAP36, AKAP14, RHOXF1, NKAPP1, NA NA NA NA NA NA NA NA NA LTS-009 H2BFWT, FAM122B, FAM122C, DCX, ZCCHC12, TSC22D3, AGTR2, ELF4, CT83, SLC25A43, NRK, INTS6L, ZNF449, TMEM31, ACSL4, GPC4, FHL1, SEPT6, ATP1B4, KCNE5, CT47A11, FAM127B, IL1RAPL2, SNORA69, BEX3, GPC3, GLUD2, RAB40AL, H2BFM, LOC286437, FIRRE, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, HPRT1, XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, OR13H1, CCDC160, IGSF1, IL13RA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 IL13RA2, LAMP2, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR106A, MIR19B2, MIR92A2, GLRA4, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, PAK3, ZDHHC9, TCEAL9, RAB9B, LUZP4, TFDP3, RBMX2, STK26, PLP1, PLS3, CT45A6, CT45A1, SASH3, WDR44, NUP62CL, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, TEX13A, MOSPD1, BEX4, PRPS1, TCEAL7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, KIAA1210, RGAG1, LRCH2, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, ARMCX5, UPF3B, CT47A7, SMARCA1, MIR542, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZNF75D, MIR766, RNF113A, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, ESX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-009 BHLHB9, CAPN6, USP26, TMEM164, PHF6, CUL4B, BEX2, IRS4, MIR503HG, TCEAL3, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, TCEAL8, AIFM1, CHRDL1, RIPPLY1, TCEAL1, MMGT1, RAB33A, MORF4L2, GPRASP1, AMMECR1) 0.284512920430467 129 0.110970636633154 0.519662973863692 14965 0.196343288054075 1 1 0 -9.41531830689944 LTS-009 NA NA NA NA LTS-009 chrX 135333842 135338342 4501 * MAP7D3 NA 0 NA 0.444 1 NA NA NA NA NA LTS-009 chrX 135338343 148628393 13290051 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, FGF13-AS1, LINC00893, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, ADGRG4, FMR1NB, LINC00889, NA, NA, F9, FGF13, FMR1, AFF2, LDOC1, SNORD61, RBMX, HTATSF1, ATP11C, LINC00632, IDS, CXorf66, LOC389895, UBE2NL, MCF2, SPANXN4, SPANXN1, SPANXN2, MAGEC2, VGLL1, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, NA NA NA NA NA NA NA NA NA LTS-009 MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, BRS3, ZIC3, MAP7D3, GPR101, SLITRK2, TMEM257, CXorf40A, ARHGEF6, CD40LG, MAGEC1) 0.302412265849281 26 0.0842042662906011 0.487630768823588 3147 0.183564760987978 1 1 0 -9.90702164518782 LTS-009 NA NA NA NA LTS-009 chrX 148628394 148632047 3654 * CXorf40A NA 0 NA 0.216032574216186 42 0.129329426135648 0 NA NA -5.79201408697668 LTS-009 chrX 148632048 149014630 382583 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A, CXorf40A) NA 0 NA 0.443911492696397 149 0.182215591945702 1 NA NA -6.1630489710172 LTS-009 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.112 1 NA NA NA NA NA LTS-009 chrX 149097210 149100977 3768 * CXorf40B NA 0 NA 0.234714569152309 39 0.120440066907152 0 NA NA -5.78648431267617 LTS-009 chrX 149100978 149101817 840 * CXorf40B NA 0 NA 0.535 1 NA NA NA NA NA LTS-009 chrX 149101818 151825944 2724127 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.301640802720571 20 0.0849366792009448 0.534743078677263 1501 0.186936634866015 1 1 0 -6.90862929410552 LTS-009 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.135 1 NA NA NA NA NA LTS-009 chrX 151869400 151995516 126117 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) NA 0 NA 0.311875215191216 116 0.141052277994495 0 NA NA -5.79702238903954 LTS-009 chrX 151995517 151995563 47 * character(0) 0.19 1 NA 1.071 1 NA NA NA NA NA LTS-009 chrX 151995564 153764248 1768685 * c(NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, TEX28, DNASE1L1, DUSP9, EMD, ABCD1, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, TAZ, ZNF185, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, FAM50A, NA NA NA NA NA NA NA NA NA LTS-009 FAM58A) 0.283563138282547 66 0.0693697988873328 0.571881729265297 4164 0.184579108540323 1 1 0 -6.77007151923522 LTS-009 NA NA NA NA LTS-009 chrX 153764249 154507173 742925 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, IKBKG) 0.275295448750123 13 0.0499672969974439 0.506928708703887 1063 0.207767428125956 1 1 0 -7.01877866321667 LTS-009 chrX 154507174 154563742 56569 * CLIC2 NA 0 NA 0.394017648097735 34 0.0914923411267221 0 NA NA -5.84389033785991 LTS-009 chrX 154563743 154580246 16504 * CLIC2 NA 0 NA 0.238840897998935 40 0.253863500572802 0 NA NA -5.78421889359394 LTS-009 chrX 154580247 154774986 194740 * TMLHE NA 0 NA 0.627641720941368 39 0.708470289530266 1 NA NA -5.76664577611624 LTS-009 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0782967803210852 25 0.0382141771249013 0 NA NA -21.7319562737086 LTS-009 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.436416698262443 21 0.42434013199207 0 NA NA -7.01091389094264 LTS-009 chr1 65893 908414 842522 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, KLHL17, LINC01128, LOC729737, OR4F5, LINC00115, PLEKHN1) 0.491 1 NA 0.791602753611375 329 0.315243369766563 2 2 0 -5.77154570007467 LTS-010 chr1 908415 1608181 699767 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, SSU72, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.38605432500819 29 0.0967880346185426 0.785919349961214 2668 0.192440071874692 2 1 1 -6.95648922830395 LTS-010 chr1 1608182 1639726 31545 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.381004667835244 12 0.0688482631105051 0.459201728881466 85 0.220821648123802 3 2 1 -7.16889857586982 LTS-010 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 1.034 1 NA NA NA NA NA LTS-010 chr1 1643792 1666175 22384 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.405692891691566 21 0.0872625758435834 0.612780468482033 149 0.253417895548334 2 1 1 -6.86099852307513 LTS-010 chr1 1666176 1666214 39 * c(SLC35E2B, SLC35E2) NA 0 NA 0.98 1 NA NA NA NA NA LTS-010 chr1 1666215 3697137 2030923 * c(LOC100129534, NA, TTC34, MIR4251, RER1, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, CALML6, MEGF6, FAAP20, GABRD, ARHGEF16, GNB1, TMEM52, HES5, SMIM1, LINC00982, WRAP73, PEX10, PANK4, PRKCZ, TP73-AS1, LRRC47, PRDM16, SKI, NADK, MIR551A, TP73, SLC35E2B, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, SLC35E2) 0.448762309573346 102 0.0620770503687864 0.778480585403825 2675 0.226682640912745 2 1 1 -6.74570847088092 LTS-010 chr1 3697138 3697976 839 * LRRC47 NA 0 NA 0.734594206623389 13 0.106415369046162 2 NA NA -5.76447179362264 LTS-010 chr1 3697977 3698058 82 * LRRC47 NA 0 NA 0.457 1 NA NA NA NA NA LTS-010 chr1 3698059 3729587 31529 * c(LRRC47, CEP104) 0.038 1 NA 0.490031265683801 57 0.209307784725908 1 1 0 -5.77368491015138 LTS-010 chr1 3729588 4847845 1118258 * c(LINC01134, DFFB, LOC284661, C1orf174, AJAP1, LINC01346, CEP104) 0.0915920901417755 22 0.0373345991591217 0.42690154397497 341 0.144236577796104 1 1 0 -6.75973347137383 LTS-010 chr1 4847846 4848030 185 * character(0) NA 0 NA 0.419207694752113 5 0.041 1 NA NA -5.76441597493557 LTS-010 chr1 5624018 5922834 298817 * c(MIR4689, MIR4417) 0.442 1 NA 0.736013825627753 9 0.370644970887836 2 2 0 -5.76603915905655 LTS-010 chr1 5922835 7806063 1883229 * c(MIR4252, ACOT7, PHF13, CAMTA1, ICMT, CHD5, NPHP4, ZBTB48, GPR153, RNF207, HES3, HES2, DNAJC11, PLEKHG5, RPL22, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, THAP3, KLHL21) 0.44503822579709 61 0.0475067093334614 0.790700843181089 2321 0.335410141011456 2 1 1 -6.74627999715462 LTS-010 chr1 7806064 7806162 99 * CAMTA1 NA 0 NA 0.714 1 NA NA NA NA NA LTS-010 chr1 7806163 12339619 4533457 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, NA NA NA NA NA NA NA NA NA LTS-010 SRM, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.451145516441113 148 0.0441993028133421 0.748531732819476 6166 0.175873945274767 2 1 1 -6.77532270736052 LTS-010 NA NA NA NA LTS-010 chr1 12339620 12401868 62249 * VPS13D 0.339 1 NA 0.765557567256978 129 0.15367296393628 2 2 0 -5.76443570129128 LTS-010 chr1 12401869 13183973 782105 * c(AADACL3, AADACL4, HNRNPCL1, PRAMEF10, PRAMEF12, PRAMEF4, PRAMEF11, PRAMEF6, HNRNPCL2, VPS13D, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, SNORA59B, DHRS3, C1orf158) 0.3344488282108 27 0.121814802687712 0.759910797050639 615 0.160426569604468 2 1 1 -7.18895759410356 LTS-010 chr1 13183974 13801621 617648 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, NA, HNRNPCL2, PRAMEF19, PRAMEF20, NA) 0.478 1 NA 0.741086544266049 21 0.357451621768264 2 2 0 -5.76675949933498 LTS-010 chr1 13801622 16385131 2583510 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, FAM131C, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.458034842589387 106 0.0372929154850203 0.763755362689583 2572 2.23514012902103 2 1 1 -6.80795129094026 LTS-010 chr1 16385132 16385178 47 * FAM131C 0.3 1 NA 0.314 1 NA NA NA NA NA LTS-010 chr1 16385179 16803429 418251 * c(CROCCP3, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.385746383923032 13 0.0792584218610075 0.766282619157872 708 0.162029111250489 2 1 1 -7.04885923895097 LTS-010 chr1 16803430 16809808 6379 * CROCCP3 NA 0 NA 0.468 1 NA NA NA NA NA LTS-010 chr1 16809809 16975366 165558 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.359867699880557 17 0.0933522346057252 0.454091266728615 80 0.121570388398833 2 1 1 -8.60575066937341 LTS-010 chr1 16975367 16975753 387 * MST1P2 NA 0 NA 0.246 1 NA NA NA NA NA LTS-010 chr1 16975754 16978916 3163 * MST1P2 0.371235740120695 6 0.0848928736702911 0.267894280720482 67 0.14894284188659 3 2 1 -6.95247580027695 LTS-010 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.17 1 NA NA NA NA NA LTS-010 chr1 17009684 17012093 2410 * character(0) 0.360306733455106 5 0.132254678556186 1.41151423755743 57 0.506907764617562 11 7 4 -6.73979209046912 LTS-010 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.884 1 NA NA NA NA NA LTS-010 chr1 17017583 17086233 68651 * c(MST1L, ESPNP, CROCC) 0.325754465870424 20 0.110411324266652 0.858448894121602 171 0.337897687061076 3 2 1 -6.77524952701332 LTS-010 chr1 17086234 17086794 561 * c(MST1L, CROCC) NA 0 NA 0.409 1 NA NA NA NA NA LTS-010 chr1 17086795 17198553 111759 * c(MST1L, CROCC) 0.29511462402225 9 0.119212811578473 0.540198791928499 40 0.199233814450542 3 2 1 -7.59459294468916 LTS-010 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.767 1 NA NA NA NA NA LTS-010 chr1 17248433 17273493 25061 * CROCC 0.374552517659464 9 0.113357227873264 1.29618330126963 75 0.522963994764286 8 5 3 -6.76598876708992 LTS-010 chr1 17273494 17274945 1452 * CROCC NA 0 NA 1.6080544701113 5 0.172299738827428 5 NA NA -5.76471412075792 LTS-010 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.978 1 NA NA NA NA NA LTS-010 chr1 17275408 17301672 26265 * c(MFAP2, CROCC) 0.472 1 NA 0.773222463602574 111 0.168270374940805 2 2 0 -5.76451895050742 LTS-010 chr1 17301673 19479946 2178274 * c(MIR4695, PADI2, IFFO2, KLHDC7A, UBR4, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.450747347040157 99 0.038345170391486 0.811083029823942 2164 0.229284000749697 2 1 1 -6.84099256094014 LTS-010 chr1 19479947 19480268 322 * UBR4 NA 0 NA 0.679 1 NA NA NA NA NA LTS-010 chr1 19480269 24198321 4718053 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, CELA3A, HNRNPR, LYPLA2, VWA5B1, UBXN10, ZNF436-AS1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, NA NA NA NA NA NA NA NA NA LTS-010 RNF186, PQLC2, CAMK2N1, ASAP3, PITHD1, KIF17, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, EIF4G3, CDA, ZBTB40, CDC42) 0.435774875208303 127 0.070709175688585 0.773296665952775 6293 0.191265497553517 2 1 1 -6.75803216866731 LTS-010 NA NA NA NA LTS-010 chr1 24198322 24198327 6 * character(0) 0.218 1 NA 0.304 1 NA NA NA NA NA LTS-010 chr1 24198328 24200052 1725 * character(0) 0.329196396340958 11 0.126807943542408 0.660350846397768 35 0.154069328495951 3 2 1 -6.75477368228638 LTS-010 chr1 24200053 24200158 106 * character(0) 0.5 1 NA 0.684727303718703 3 0.11001969520651 2 2 0 -5.76447035203861 LTS-010 chr1 24200159 25611295 1411137 * c(MIR378F, RCAN3AS, SRRM1, RCAN3, CNR2, MYOM3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, PNRC2, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.460957875194902 47 0.0299976101422441 0.764485293070327 1632 0.182463248140258 2 1 1 -6.90294826388441 LTS-010 chr1 25611296 25617100 5805 * c(RSRP1, RHD) NA 0 NA 1.634 1 NA NA NA NA NA LTS-010 chr1 25617101 25656146 39046 * c(RSRP1, RHD) NA 0 NA 1.37733546572871 43 0.425641249021071 4 NA NA -5.76467494417171 LTS-010 chr1 25656147 25656277 131 * c(RSRP1, RHD) NA 0 NA 0.78 1 NA NA NA NA NA LTS-010 chr1 25656278 25688709 32432 * c(TMEM50A, RSRP1, RHD) 0.355516034773212 3 0.121166552040294 0.770469916485193 72 0.122680545467921 3 2 1 -6.89785351533513 LTS-010 chr1 25688710 25688814 105 * c(TMEM50A, RHCE) NA 0 NA 0.448 1 NA NA NA NA NA LTS-010 chr1 25688815 25729254 40440 * c(TMEM50A, RHCE) NA 0 NA 0.448935433509625 39 0.150735824537236 1 NA NA -5.76813547967325 LTS-010 chr1 25729255 25735129 5875 * RHCE NA 0 NA 0.869 1 NA NA NA NA NA LTS-010 chr1 25735130 33985561 8250432 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR3605, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, RNF19B, A3GALT2, COL16A1, DCDC2B, ZNF362, LINC01225, PDIK1L, PAQR7, PHC2, FAM76A, TXLNA, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, NA NA NA NA NA NA NA NA NA LTS-010 HDAC1, HMGN2, HPCA, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, TRIM62, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, MARCKSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, ZSCAN20, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.442309914039393 202 0.0515906817499675 0.755438650611416 10392 0.183212105274897 2 1 1 -6.74708590028524 LTS-010 NA NA NA NA LTS-010 chr1 33985562 35260716 1275155 * c(CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, C1orf94) 0.480940456586427 11 0.0129031356301834 0.851771548010119 687 0.175745623848214 2 1 1 -9.85555932587497 LTS-010 chr1 35260717 35260769 53 * GJA4 0.491 1 NA 0.679 1 NA NA NA NA NA LTS-010 chr1 35260770 43126740 7865971 * c(NFYC-AS1, MIR4255, MIR3659, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, SMIM12, TMCO2, ZNF684, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, CSF3R, MANEAL, CTPS1, CITED4, EDN2, AGO3, AGO4, SLFNL1, FHL3, FOXJ3, SCMH1, NCDN, MACF1, MYCBP, HEYL, AGO1, GJA4, TRAPPC3, TEKT2, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, TFAP2E, ZFP69, BMP8A, INPP5B, MIR30C1, NA NA NA NA NA NA NA NA NA LTS-010 MIR30E, MTF1, MYCL, NDUFS5, NFYC, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, PPT1, MAP7D1, PSMB2, DLGAP3, HIVEP3, RLF, CLSPN, OXCT2, RRAGC, SFPQ, KIAA0754, SMAP2, MEAF6, EXO5, MRPS15, ZFP69B, LOC653160, BMP8B, SNORA55, LINC01137, PPIEL, CCDC30, DNALI1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, PABPC4, KCNQ4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZMYM4, ZMYM6, RIMS3, THRAP3) 0.44712398551494 115 0.0623548138239346 0.757623982408307 8888 0.180557534285631 2 1 1 -6.7397992345096 LTS-010 NA NA NA NA LTS-010 chr1 43126741 43130458 3718 * PPIH NA 0 NA 0.836 1 NA NA NA NA NA LTS-010 chr1 43130459 44482896 1352438 * c(LOC100129924, KDM4A-AS1, PPIH, EBNA1BP2, MED8, ERMAP, TMEM125, CLDN19, CFAP57, C1orf210, CCDC24, DPH2, SZT2, SVBP, MPL, SLC2A1-AS1, FAM183A, YBX1, ZNF691, ATP6V0B, PTPRF, P3H1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, C1orf50, HYI, B4GALT2, ARTN, IPO13, KDM4A, CDC20) 0.463221315099729 31 0.0240842606883256 0.820576141026091 2668 0.187472137044293 2 1 1 -7.18782337589383 LTS-010 chr1 44482897 72241986 27759090 * c(EFCAB14-AS1, LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR761, MIR3117, MIR3671, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR5584, ZRANB2-AS2, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, HHLA3, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, C1orf87, KLF17, CPT2, UBE2U, KNCN, MOB3C, GLIS1, NA NA NA NA NA NA NA NA NA LTS-010 CTH, IL23R, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, TCTEX1D1, AK4, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, SLC35D1, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, NEGR1, PARS2, MMACHC, ACOT11, CYP4X1, SERBP1, BEST4, SNORD55, RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FAM151A, C1orf228, TCTEX1D4, FAM159A, IL12RB2, IPP, JAK1, JUN, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LEPR, LINC01144, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, ZYG11A, MUTYH, NASP, NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HOOK1, PDE4B, HSPB11, CMPK1, PGM1, PIN1P1, LURAP1, YIPF1, SPATA6, L1TD1, LEPROT, C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, POMGNT1, PRKAA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LRRC40, DEPDC1, NDC1, DMAP1, GNG12, PTGER3, LRRC7, ZSWIM5, CACHD1, MIER1, RAB3B, GPBP1L1, CYB5RL, RPE65, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, SLC6A9, TAL1, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DOCK7, MKNK1, PLPP3, PTCH2, EIF2B3, DIRAS3, BTF3L4, SRSF11, ZFYVE9, ZRANB2, SNORD46, SNORD38A, SNORD38B, TMEM59, EFCAB14, DNAJC6) 0.447229647737332 364 0.0531573850736347 0.774592736076963 18265 0.191746200812278 2 1 1 -6.8446797728512 LTS-010 NA NA NA NA LTS-010 chr1 72241987 72400748 158762 * c(NEGR1-IT1, NEGR1) NA 0 NA 0.907 1 NA NA NA NA NA LTS-010 chr1 72400749 77530657 5129909 * c(FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT) 0.440376725356009 36 0.0606457839516574 0.826861907473816 1668 0.214314577838112 2 1 1 -7.14698372526473 LTS-010 chr1 77530658 91447924 13917267 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GBP4, GBP5, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, GBP6, CLCA4, USP33, ADGRL2, LRRC8B, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, AK5, GBP1, GBP2, GBP3, GNG5, ZNF326, GTF2B, LINC01140, BARHL2, CYR61, MIGA1, GBP7, UOX, GBP1P1, FLJ27354, LINC01555, GEMIN8P4, RBMXL1, SH3GLB1, ZNHIT6, GIPC2, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, NA NA NA NA NA NA NA NA NA LTS-010 PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, LOC729930, TTLL7, RPF1, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.448999263200443 123 0.0576534800669292 0.756930277670746 6164 0.216338165897526 2 1 1 -6.74577613926998 LTS-010 NA NA NA NA LTS-010 chr1 91447925 94458457 3010533 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, HFM1, DR1, MTF2, KIAA1107, ABCA4, EPHX4, GFI1, SNORA66, GCLM, BTBD8, DNTTIP2, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, BCAR3, ZNF644) 0.463681039406052 24 0.0324880133971401 0.713770836199028 2188 0.184485233140255 2 1 1 -7.1525063045609 LTS-010 chr1 94458458 98012549 3554092 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.444397742617436 29 0.0746391648272432 0.805592314126877 1235 0.21455756386634 2 1 1 -6.86996751483273 LTS-010 chr1 98012550 117127417 19114868 * c(LINC01349, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR4256, FAM212B-AS1, MIR2682, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, MAB21L3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, S1PR1, CELSR2, HIPK1, EXTL2, NTNG1, NA NA NA NA NA NA NA NA NA LTS-010 WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, IGSF3, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, SNX7, ATP5F1, TRIM33, DPH5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GPR88, TRMT13, RSBN1, PALMD, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, TSHB, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, PROK1, CASQ2, PSRC1, ATP1A1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 STRIP1, CDC14A, RTCA, SLC16A4, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.455499985348043 294 0.0520343644654591 0.757276125917053 12451 0.209705915600272 2 1 1 -6.77064908042639 LTS-010 NA NA NA NA LTS-010 chr1 117127418 117142613 15196 * IGSF3 0.256 1 NA 0.731897265732016 19 0.143601320263034 2 2 0 -5.76515119493832 LTS-010 chr1 117142614 117156490 13877 * IGSF3 0.261067685711931 12 0.0794802719947764 0.548779202564295 45 0.214737302513814 4 3 1 -6.89792950690479 LTS-010 chr1 117156491 117529965 373475 * c(MIR320B1, IGSF3, PTGFRN, CD2) 0.487 1 NA 0.772848835729425 174 0.555829322871428 2 2 0 -5.76454231545199 LTS-010 chr1 117529966 118644430 1114465 * c(MIR942, WDR3, MAN1A2, SPAG17, GDAP2, FAM46C, PTGFRN, VTCN1, TRIM45, TTF2, CD101) 0.450731943978706 49 0.046813741150908 0.735014681241943 1346 0.179794981520788 2 1 1 -6.77045441004399 LTS-010 chr1 118644431 119530354 885924 * c(SPAG17, TBX15) NA 0 NA 0.740262526694938 122 0.139880326073914 2 NA NA -5.7880847182644 LTS-010 chr1 119530355 119573860 43506 * c(WARS2, TBX15) 0.318 1 NA 0.990757434024132 5 0.557776657812067 3 3 0 -5.7653566794682 LTS-010 chr1 119573861 120057696 483836 * c(WARS2, HSD3B1, HSD3B2, HAO2) 0.349514572888187 8 0.046508831726581 1.10049378296443 219 0.205896916327866 3 2 1 -6.73673726194615 LTS-010 chr1 120057697 120162067 104371 * c(HSD3BP4, LINC00622, ZNF697) NA 0 NA 0.668 1 NA NA NA NA NA LTS-010 chr1 120162068 121116733 954666 * c(SRGAP2D, ADAM30, FCGR1B, PHGDH, HMGCS2, HIST2H2BA, NBPF7, NOTCH2, FAM72B, REG4, ZNF697) 0.365719575844014 25 0.0870809393610335 0.772749785285985 923 0.519072540834964 3 2 1 -7.02032796240711 LTS-010 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.754248590434774 61 0.307232747607064 2 NA NA -5.76455772532012 LTS-010 chr1 143912360 144013853 101494 * FAM72D 0.271 1 NA 0.940472432528988 5 0.0485128848863886 3 3 0 -6.35150191534728 LTS-010 chr1 144013854 144951973 938120 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.325645938001585 41 0.0417277471000865 1.04491200591736 411 0.275485189282428 3 2 1 -6.89142182457711 LTS-010 chr1 144951974 144952078 105 * c(NBPF20, LOC653513, PDE4DIP) 0.204 1 NA 1.32025153780018 3 0.364118570431849 4 4 0 -5.7644137449126 LTS-010 chr1 144952079 145115887 163809 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.223347865449313 32 0.0918269541917243 1.01834307497629 154 0.254740263521347 4 3 1 -7.02875441560945 LTS-010 chr1 145115888 145136246 20359 * c(NBPF20, SEC22B) NA 0 NA 4.12 1 NA NA NA NA NA LTS-010 chr1 145136247 145138315 2069 * NBPF20 0.438 1 NA 2.22553681461972 46 0.891394075087696 6 6 0 -5.76441384106779 LTS-010 chr1 145138316 145138321 6 * NBPF20 NA 0 NA 1.567 1 NA NA NA NA NA LTS-010 chr1 145138322 145283733 145412 * c(NBPF10, NBPF20, NOTCH2NL) 0.191758709269513 16 0.130912120650967 1.1423902583785 115 0.294702935924314 5 4 1 -6.94205705707875 LTS-010 chr1 145283734 145283822 89 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 1.326 1 NA NA NA NA NA LTS-010 chr1 145283823 150595031 5311209 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, MIR5087, FALEC, SF3B4, PIAS3, POLR3C, TXNIP, MTMR11, CD160, VPS45, LIX1L, CIART, HFE2, ANKRD35, NBPF12, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, HIST2H2AB, HIST2H2BC, NOTCH2NL, LINC01138, LOC388692, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, MRPS21, ADAMTSL4, PRKAB2, OTUD7B, NA NA NA NA NA NA NA NA NA LTS-010 LINC00869, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, POLR3GL, ITGA10, PEX11B, PRPF3, CHD1L, SV2A, RBM8A) 0.2728861050046 55 0.0655048922531051 1.41801676380256 3926 0.385233226732269 4 3 1 -6.74831094864056 LTS-010 NA NA NA NA LTS-010 chr1 150595032 150595154 123 * ENSA NA 0 NA 0.976 1 NA NA NA NA NA LTS-010 chr1 150595155 150916546 321392 * c(CTSK, CTSS, ENSA, ARNT, GOLPH3L, HORMAD1, SETDB1) 0.26697124813896 8 0.0355798899861786 1.27108211644261 593 0.262319515760367 4 3 1 -6.77963617157238 LTS-010 chr1 150916547 150917372 826 * SETDB1 NA 0 NA 2.103 1 NA NA NA NA NA LTS-010 chr1 150917373 152760557 1843185 * c(C1orf68, LOC100132111, C2CD4D, TNFAIP8L2-SCNM1, SEMA6C, MLLT11, TDRKH, CELF3, THEM4, GABPB2, TCHHL1, RPTN, BNIPL, LCE4A, FLG, POGZ, LCE5A, LCE2B, RIIAD1, THEM5, TMOD4, CERS2, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, LYSMD1, HRNR, FLG2, KPRP, CRNN, OAZ3, PI4KB, CRCT1, C1orf56, FAM63A, CDC42SE1, PSMB4, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, NA NA NA NA NA NA NA NA NA LTS-010 MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, SNX27, PIP5K1A, ANXA9, LCE3D, SELENBP1, SETDB1) 0.260404030223828 108 0.0612473662730848 1.44635565292996 3860 0.320512244216316 4 3 1 -6.7359278678329 LTS-010 NA NA NA NA LTS-010 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.449 1 NA NA NA NA NA LTS-010 chr1 152760642 152777462 16821 * c(LCE1C, LCE1D, LCE1E) 0.189911000091725 2 0.0565685424949238 2.63766601012577 40 1.10680250826771 11 9 2 -6.73437641760241 LTS-010 chr1 152777463 156838525 4061063 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, NA NA NA NA NA NA NA NA NA LTS-010 S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, ILF2, INSRR, IVL, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.266363430428743 187 0.0485753935388588 1.42041103759689 9777 0.313713143929392 4 3 1 -6.73903240738974 LTS-010 NA NA NA NA LTS-010 chr1 156838526 160187351 3348826 * c(CADM3-AS1, LINC01133, FCRL1, FCRL3, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, LRRC71, PYHIN1, ETV3, FCER1A, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, CYCSP52, PEAR1, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, MNDA, ETV3L, OR10J3, ATP1A2, ATP1A4, NTRK1, DCAF8, DUSP23, KIRREL, SLAMF8, IGSF9, CADM3, LOC646268, SPTA1, MIR765, FCRL2, OR6N2, OR6K2, FCRL5, NA NA NA NA NA NA NA NA NA LTS-010 FCRL4, TAGLN2, CASQ1, PEA15, SLAMF9, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, PIGM, IGSF8, AIM2, ARHGEF11) 0.266077971595118 128 0.038741712347166 1.5054569606261 4484 0.349288102118219 4 3 1 -6.76523121408506 LTS-010 NA NA NA NA LTS-010 chr1 160187352 160187367 16 * DCAF8 NA 0 NA 1.194 1 NA NA NA NA NA LTS-010 chr1 160187368 169822088 9634721 * c(MIR921, TSTD1, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR5187, GPA33, SLC19A2, DUSP12, SLAMF6, FMO9P, TADA1, SH2D1B, KLHDC9, UHMK1, FCRLB, COPA, ITLN2, FAM78B, DPT, F5, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, ATF6, NCSTN, GPR161, ARHGAP30, CFAP126, MPC2, OLFML2B, TIPRL, USP21, C1orf111, NME7, HSPA6, HSPA7, APOA2, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, LY9, MGST3, MPZ, NA NA NA NA NA NA NA NA NA LTS-010 LRRC52, LOC440700, NDUFS2, SUMO1P3, NHLH1, ATP1B1, NIT1, DDR2, DCAF8, F11R, PBX1, HSD17B7, UFC1, CD244, PFDN2, TMCO1, POU2F1, PPOX, ITLN1, C1orf112, ADCY10, DCAF6, VANGL2, POGK, CCDC181, SLAMF7, PEX19, RGS4, RXRG, XCL1, SDHC, SELE, SELL, SELP, RPL31P11, SLAMF1, PCP4L1, UAP1, XCL2, MIR556, MIR557, UCK2, USF1, LINC00626, NECTIN4, NUF2, TOMM40L, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, B4GALT3, CREG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CD84, MPZL1, TBX19, FCGR2C, CD247, DEDD, DUSP27, RCSD1, METTL18, ADAMTS4, CD48, NOS1AP, NR1I3) 0.24939594312747 220 0.0577030910838489 1.43452840515315 8324 0.363218647992222 4 3 1 -6.77507314484809 LTS-010 NA NA NA NA LTS-010 chr1 169822089 170137019 314931 * c(MIR3119-1, MIR3119-2, METTL11B, KIFAP3, C1orf112, SCYL3) NA 0 NA 1.39575670125454 225 0.307265979346058 4 NA NA -5.76645486299499 LTS-010 chr1 170137020 170501177 364158 * LINC01142 NA 0 NA 0.531 1 NA NA NA NA NA LTS-010 chr1 170501178 170699377 198200 * c(PRRX1, GORAB) 0.03 1 NA 1.15760099735768 167 0.316667924516251 3 3 0 -5.76730413893749 LTS-010 chr1 170699378 172412451 1713074 * c(MIR1295A, MIR3120, DNM3OS, MIR1295B, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, FMO6P, MYOC, METTL13, PIGC, PRRX1, TOP1P1, MROH9, VAMP4, C1orf105) 0.0398395181801514 13 0.0221992723373468 1.12334289920879 1466 0.289295723304474 3 3 0 -6.74141920540847 LTS-010 chr1 172412452 172412456 5 * c(PIGC, C1orf105) NA 0 NA 0.914 1 NA NA NA NA NA LTS-010 chr1 172412457 174340246 1927790 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, PRDX6, RABGAP1L) 0.0382160890862502 24 0.0459926742748943 1.01819384207115 1377 0.26365010354737 3 3 0 -6.83489388602533 LTS-010 chr1 174340247 174363066 22820 * RABGAP1L NA 0 NA 1.066 1 NA NA NA NA NA LTS-010 chr1 174363067 176524652 2161586 * c(CACYBP, PAPPA2, TNN, MRPS14, RFWD2, SCARNA3, TNR, GPR52, KIAA0040, RABGAP1L) 0.0536006387149605 15 0.0558091987638836 1.11569903767433 841 1.19566936965068 3 3 0 -6.77924582141261 LTS-010 chr1 176524653 178846863 2322211 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.0339886874895319 37 0.0144445195193244 1.22296217335641 1247 0.632198469441401 3 3 0 -6.81840211910159 LTS-010 chr1 178846864 178848022 1159 * RALGPS2 NA 0 NA 1.073 1 NA NA NA NA NA LTS-010 chr1 178848023 181453125 2605103 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, IER5, RALGPS2, QSOX1, KIAA1614, TOR3A, SOAT1, CACNA1E, NPHS2, ACBD6, LHX4, XPR1, CEP350, FAM20B) 0.0365427305322537 73 0.0197000915557755 1.070847761513 2915 0.276049262559633 3 3 0 -6.75326119877661 LTS-010 chr1 181453126 182351822 898697 * c(ZNF648, GLUL, CACNA1E) 0.0357805831500165 10 0.0180003086393292 1.24575708231652 578 0.304282097820036 3 3 0 -6.82933973083471 LTS-010 chr1 182351823 196758778 14406956 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, CFHR3, OCLM, TSEN15, FAM129A, TEDDM1, DHX9, NMNAT2, COLGALT2, RGL1, GLUL, LOC284648, SMG7-AS1, CFH, CFHR1, BRINP3, KCNT2, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, NPL, NA NA NA NA NA NA NA NA NA LTS-010 C1orf21, SHCBP1L, TRMT1L, HMCN1, RGS8, B3GALT2, SMG7) 0.0373594570328665 114 0.0173042156575158 1.08001436835043 5438 0.277765037166466 3 3 0 -6.77838086202704 LTS-010 NA NA NA NA LTS-010 chr1 196758779 196758937 159 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 1.30649159659711 7 0.373815207721422 4 NA NA -5.7644166580984 LTS-010 chr1 196758938 196758941 4 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.651 1 NA NA NA NA NA LTS-010 chr1 196758942 196759037 96 * c(CFHR4, CFHR3, CFHR1) 0.039 1 NA 0.370925707172146 3 0.330480458322929 1 1 0 -5.76441919988901 LTS-010 chr1 196759038 196797383 38346 * c(CFHR4, CFHR3, CFHR1) 0.0469328764230028 3 0.010816653826392 0.696198979171654 58 0.530042011141869 2 2 0 -7.05110851151863 LTS-010 chr1 196797384 196799601 2218 * c(CFHR4, CFHR1) NA 0 NA 1.192 1 NA NA NA NA NA LTS-010 chr1 196799602 196926973 127372 * c(CFHR4, CFHR1, CFHR2) 0.2280669530259 6 0.187127763840644 1.16197772086449 110 0.582716274482807 4 3 1 -6.76616952821713 LTS-010 chr1 196926974 196946869 19896 * c(CFHR2, CFHR5) 0.03 1 NA 1.09502332754467 19 0.280105431278258 3 3 0 -5.76441591180704 LTS-010 chr1 196946870 200827906 3881037 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5, DDX59, KIF14) 0.0348421072865146 24 0.021097041141533 1.06527210035093 2193 0.332973752770845 3 3 0 -6.77086279384624 LTS-010 chr1 200827907 211745926 10918020 * c(MIR1231, ZBED6, MIR4260, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, PHLDA3, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, OPTC, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, NA NA NA NA NA NA NA NA NA LTS-010 GPR25, UBE2T, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, RPS10P7, KISS1, TMEM81, LAD1, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, LAX1, KLHDC8A, ETNK2, AVPR1B, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, CAMK1G, SERTAD4-AS1, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MIR205HG, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2) 0.0390559957599384 303 0.0359918356750981 1.11583665703715 12879 0.284603012854553 3 3 0 -6.74642268151709 LTS-010 NA NA NA NA LTS-010 chr1 211745927 214825298 3079372 * c(MIR3122, LINC00538, CENPF, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.0410532400102975 51 0.017134851538747 1.0415804391088 2083 0.270299984165138 3 3 0 -6.82991402351344 LTS-010 chr1 214825299 214826116 818 * CENPF NA 0 NA 1.191 1 NA NA NA NA NA LTS-010 chr1 214826117 219783481 4957365 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.0433683436556675 34 0.0138530935044666 1.15590095618268 1594 0.312361360488491 3 3 0 -6.88861246660024 LTS-010 chr1 219783482 219785375 1894 * character(0) 0.0291524420670844 2 0.0240416305603426 0.651582666213117 39 0.441161355323083 4 4 0 -6.7367058621347 LTS-010 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 1.487 1 NA NA NA NA NA LTS-010 chr1 220088472 234456023 14367552 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, NA NA NA NA NA NA NA NA NA LTS-010 PRSS38, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, TRIM17, EGLN1, MAP10, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.0378964979068372 233 0.0183228582601936 1.09040605207822 11370 0.267889863807703 3 3 0 -6.74602083611686 LTS-010 NA NA NA NA LTS-010 chr1 234456024 234458756 2733 * SLC35F3 NA 0 NA 0.837 1 NA NA NA NA NA LTS-010 chr1 234458757 236899015 2440259 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.0383709100678103 28 0.0227857225788245 1.0204913214984 2177 0.268281666457694 3 3 0 -6.85033869786887 LTS-010 chr1 236899016 241850822 4951807 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, FH, OPN3, LINC01139, MTR, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, KMO, ACTN2) 0.0362980340092955 28 0.0193253951957237 1.14872515733237 2042 0.264977468168198 3 3 0 -6.81084859927923 LTS-010 chr1 241850823 244220482 2369660 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, WDR64, PLD5, LOC339529, MAP1LC3C, LINC01347, EXO1, CEP170) 0.114570331842487 7 0.075434298123157 0.767788347934758 795 0.18545559883471 2 2 0 -7.08748576299406 LTS-010 chr1 244220483 248020843 3800361 * c(MIR3916, ZNF670-ZNF695, ZBTB18, NLRP3, COX20, OR2B11, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR14A16, NA, HNRNPU, OR6F1, C1orf229, OR11L1, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670) 0.0353441300894097 64 0.0148221935163093 1.11293548759399 2607 0.313478507960688 3 3 0 -6.75569000959273 LTS-010 chr1 248020844 248020890 47 * TRIM58 NA 0 NA 1.527 1 NA NA NA NA NA LTS-010 chr1 248020891 248059856 38966 * c(TRIM58, OR2W3) 0.027443602646286 8 0.00785129652623419 1.29781138201913 80 0.39132315124783 4 4 0 -6.76175638821343 LTS-010 chr1 248059857 248224569 164713 * c(TRIM58, OR2L2, OR2L1P, OR2L13, OR2T8, OR2L8, OR2AK2, OR2L3, OR2L5) 0.188 1 NA 1.27311348497295 145 0.248504094071134 4 4 0 -5.78889275956157 LTS-010 chr1 248224570 248637028 412459 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, OR2M4, OR2T1, OR2L13, OR2T3, OR2M1P, OR2L3, OR2M2, OR2T33, OR2M7, OR2T2) 0.239235920630016 9 0.165492446957558 1.288669733793 285 2.09436272961901 4 3 1 -6.7477465507083 LTS-010 chr1 248637029 248814052 177024 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T5, OR2T27, OR2T35) 0.351813516973607 3 0.254602304257706 1.06349560648621 175 0.313314901424819 3 2 1 -6.73471133554655 LTS-010 chr1 248814053 249214134 400082 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) NA 0 NA 1.07833284467806 327 0.186830222136882 3 NA NA -5.76759377630121 LTS-010 chr2 38824 39555 732 * FAM110C 0 1 NA 0.735904570450136 13 0.191055200776084 2 2 0 -5.76442526322592 LTS-010 chr2 39556 46341 6786 * FAM110C 0.07 1 NA 0.688955991720453 70 0.165156990375761 2 2 0 -5.76594449202545 LTS-010 chr2 46342 218167 171826 * c(SH3YL1, FAM110C) NA 0 NA 1.473 1 NA NA NA NA NA LTS-010 chr2 218168 669023 450856 * c(TMEM18, SH3YL1, FAM150B, ACP1) 0.371369757682105 11 0.0396142765816935 1.00713723919648 243 0.217186497813515 3 2 1 -7.01793572193179 LTS-010 chr2 669024 669033 10 * TMEM18 NA 0 NA 1.195 1 NA NA NA NA NA LTS-010 chr2 669034 1794410 1125377 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, PXDN) 0.324618168041118 15 0.0619652744534811 1.19917410485457 545 0.307050838073046 3 2 1 -6.85367547288069 LTS-010 chr2 1794411 1813053 18643 * MYT1L NA 0 NA 1.17036210997483 39 0.147628596244596 3 NA NA -5.7662803317248 LTS-010 chr2 1813054 1842989 29936 * MYT1L NA 0 NA 0.739 1 NA NA NA NA NA LTS-010 chr2 1842990 1982877 139888 * MYT1L 0.137 1 NA 0.898185453992984 81 0.184620254229066 2 2 0 -5.82975644349564 LTS-010 chr2 1982878 3469463 1486586 * c(MYT1L, TRAPPC12, TSSC1, MYT1L-AS1) 0.118771320925198 9 0.149140127993031 0.756078124419607 203 0.218556161628956 2 2 0 -6.84206008957022 LTS-010 chr2 3469464 3470115 652 * TRAPPC12 0.043 1 NA 0.605507577120069 5 0.171939815051663 2 2 0 -5.76511212838413 LTS-010 chr2 3470116 3749084 278969 * c(RNASEH1-AS1, RNASEH1, TRAPPC12, ADI1, ALLC, RPS7, COLEC11) 0.0511377986459996 21 0.0227696539907207 0.748759203184243 347 0.202214098964587 2 2 0 -6.75170794527217 LTS-010 chr2 3749085 4672772 923688 * c(LINC01304, ALLC) NA 0 NA 0.796600289275714 85 0.178929924627411 2 NA NA -5.79739080107815 LTS-010 chr2 5832807 5837271 4465 * SOX11 0.381 1 NA 1.25654160709761 91 0.307539259830345 3 3 0 -5.76489923441285 LTS-010 chr2 5837272 7001449 1164178 * c(CMPK2, LINC01105, LOC400940, LINC00487, SOX11) 0.364753364311156 2 0.0721248916810278 1.23700421017155 162 0.248398444921891 3 2 1 -6.92188938356015 LTS-010 chr2 7001450 9770613 2769164 * c(LOC100506274, YWHAQ, CMPK2, MBOAT2, IAH1, LINC00298, LINC00299, ID2, RNF144A-AS1, CPSF3, KIDINS220, ADAM17, ASAP2, RSAD2, ITGB1BP1, RNF144A) 0.324682782932609 41 0.0513848345284112 1.06112736781103 1341 0.241933716955243 3 2 1 -6.87314538776319 LTS-010 chr2 9770614 9770830 217 * YWHAQ NA 0 NA 1.131645087156 5 0.0929042517864495 3 NA NA -5.76442086664729 LTS-010 chr2 9770831 9974000 203170 * YWHAQ NA 0 NA 0.695 1 NA NA NA NA NA LTS-010 chr2 9974001 9983686 9686 * TAF1B 0.091 1 NA 0.572987049781811 11 0.219523699279724 2 2 0 -5.77423801200414 LTS-010 chr2 9983687 37075786 27092100 * c(OST4, LOC100271832, LOC100288911, MIR1301, BRE-AS1, SNORA80B, MIR4261, MIR4263, MIR3125, MIR4262, GTF3C2-AS1, LOC100505716, LOC100506474, NT5C1B-RDH14, MIR4765, MIR4757, MIR4429, LINC00570, PREB, PDIA6, MYCNOS, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, GPN1, KLHL29, CIB4, OSR1, TTC32, ZNF513, C2orf50, PQLC3, TCF23, GAREM2, PLB1, MYADML, FAM84A, GDF7, ADGRF3, FAM179A, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, NA NA NA NA NA NA NA NA NA LTS-010 KRTCAP3, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, WDR43, LPIN1, PUM2, FOSL2, NTSR2, ALK, SPDYA, ATP6V1C2, FTH1P3, LCLAT1, RASGRP3, FAM98A, IFT172, GCKR, SNORD53, LINC00486, DNAJC5G, FLJ33534, TRIB2, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, EHD3, HPCAL1, APOB, C2orf70, PRR30, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNK3, KCNS3, KHK, KIF3C, RHOB, MFSD2B, C2orf71, PTRHD1, LINC00954, LTBP1, MATN3, MPV17, CAPN14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MYCN, ODC1, ITSN2, MEMO1, CRIM1, DNAJC27, ATRAID, NBAS, SF3B6, YPEL5, VIT, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, PPP1CB, TRMT61B, ASXL2, TTC27, SLC30A6, DPYSL5, TRIM54, BIRC6, WDR35, RDH14, NLRC4, AGBL5, LDAH, RRM2, SDC1, RBKS, HS1BP3, LOC645949, FNDC4, FAM228A, SPAST, SRD5A2, STRN, SNORD92, MIR558, RAD51AP2, DNAJC27-AS1, UCN, VSNL1, XDH, SLC30A3, CAD, CENPO, GALNT14, CCDC121, SMC6, CLIP4, NOL10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 WDCP, FAM49A, LBH, C2orf16, YIPF4, ZNF512, KLF11, DPY30, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, TAF1B, CAPN13, DRC1, NT5C1B, OTOF, ROCK2, TP53I3, MRPL33, BRE, FEZ2, GREB1, LAPTM4A, SNX17, SUPT7L) 0.0573614407846191 322 0.027727391458082 0.763057335998649 16880 0.208592204263208 2 2 0 -6.73754118120234 LTS-010 NA NA NA NA LTS-010 chr2 37075787 44016935 6941149 * c(SLC8A1-AS1, LINC01126, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, PLEKHH2, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, HAAO, PRKD3, GPATCH11, QPCT, EML4, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, DYNC2LI1, HEATR5B, NDUFAF7, EIF2AK2, MTA3, THADA, ATL2, SRSF7, SLC8A1, SOS1, ZFP36L2, STRN, LOC728730, C1GALT1C1L, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L, HNRNPLL) 0.0553540863467957 92 0.0283380133474064 0.715915904524422 4314 0.206921947257383 2 2 0 -7.09650610925591 LTS-010 chr2 44016936 44019791 2856 * DYNC2LI1 NA 0 NA 0.928 1 NA NA NA NA NA LTS-010 chr2 44019792 54076427 10056636 * c(LINC01119, MIR3682, MIR548AD, LRPPRC, SIX2, GTF2A1L, STON1, PPP1R21, EPAS1, RHOQ, FSHR, ERLEC1, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LHCGR, LINC01121, EPCAM, MSH2, CHAC2, ASB3, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, ABCG5, ABCG8, SIX3, SLC3A1, MIR559, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, NRXN1, CRIPT, PREPL, SOCS5) 0.0533707200030246 76 0.0230251845336149 0.766986081484979 3910 0.190875249928907 2 2 0 -6.74181018758277 LTS-010 chr2 54076428 54079990 3563 * ASB3 NA 0 NA 0.608 1 NA NA NA NA NA LTS-010 chr2 54079991 70889521 16809531 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, GPR75, SNRNP27, CFAP36, CCDC85A, WDR92, ADD2, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, EFEMP1, AAK1, CEP68, PSME4, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, PRORSD1P, TSPYL6, NA NA NA NA NA NA NA NA NA LTS-010 EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, MIR216A, MIR217, MXD1, MDH1, MEIS1, MTIF2, OTX1, PCBP1, WDPCP, ASB3, PCYOX1, VPS54, PEX13, BCL11A, PLEK, ETAA1, AFTPH, C2orf42, FANCL, PPP3R1, FBXO48, CCDC88A, GKN1, PNO1, RPL23AP32, RTN4, PELI1, PPP4R3B, RAB1A, REL, RPS27A, GMCL1, LOC644838, PAPOLG, SLC1A4, SNRPG, SPTBN1, TGFA, TIA1, MEIS1-AS3, UGP2, VRK2, XPO1, FAM161A, ANTXR1, KIAA1841, FAM136A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PNPT1, USP34, SERTAD2, ACYP2, ARHGAP25) 0.0541593848123619 171 0.0263001345248155 0.724240902447497 8330 0.195416074407249 2 2 0 -7.36232983732431 LTS-010 NA NA NA NA LTS-010 chr2 70889522 73518278 2628757 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EGR4, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.0570134246139648 47 0.0277275798872076 0.792898160674395 2595 0.18975539517501 2 2 0 -6.80241992430763 LTS-010 chr2 73518279 74881727 1363449 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, SLC4A5, RTKN, TTC31, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.0559431883238853 6 0.0145384547551198 0.746165451673755 2683 0.172296547677266 2 2 0 -6.74835848800201 LTS-010 chr2 74881728 74882302 575 * SEMA4F NA 0 NA 1.299 1 NA NA NA NA NA LTS-010 chr2 74882303 84676883 9794581 * c(SNAR-H, MIR4264, MIR5000, SEMA4F, REG3G, CTNNA2, DHFRP3, HK2, LRRTM1, FUNDC2P2, REG3A, POLE4, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, SUCLG1, MRPL19) 0.0503935694440394 30 0.0253303688525631 0.822524952053746 1141 0.226045787379266 2 2 0 -7.35007048781056 LTS-010 chr2 84676884 84686276 9393 * SUCLG1 NA 0 NA 0.629 1 NA NA NA NA NA LTS-010 chr2 84686277 87420725 2734449 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, LOC285074, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.055861885023879 53 0.0298551413158578 0.749840532516925 3174 0.179235973388825 2 2 0 -6.7477637001778 LTS-010 chr2 87420726 87421861 1136 * RMND5A NA 0 NA 0.127 1 NA NA NA NA NA LTS-010 chr2 87421862 87425310 3449 * RMND5A NA 0 NA 0.394451037458001 49 0.264522406879827 1 NA NA -5.76455625580556 LTS-010 chr2 87425311 87425322 12 * RMND5A NA 0 NA 0.767 1 NA NA NA NA NA LTS-010 chr2 87425323 90259965 2834643 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.0441258516927017 17 0.0114407039067687 0.819175131175913 885 0.511013839201653 2 2 0 -7.26570288285738 LTS-010 chr2 90259966 91809324 1549359 * LOC654342 0.46 1 NA 1.03296328613105 13 0.193964575142618 3 3 0 -5.86550347424754 LTS-010 chr2 91809325 91935478 126154 * LOC654342 0.340881047067158 9 0.15695868175344 0.84334990022694 39 0.194111178960849 3 2 1 -6.87384854746799 LTS-010 chr2 91935479 91935531 53 * character(0) 0.216 1 NA 0.925 1 NA NA NA NA NA LTS-010 chr2 91935532 91955404 19873 * character(0) 0.205747167674734 9 0.0753093619678191 0.756247836350223 41 0.179200378375036 5 4 1 -7.00102908585885 LTS-010 chr2 91955405 91955470 66 * character(0) NA 0 NA 1.27145444200182 3 0.272509327057503 4 NA NA -5.76441837250324 LTS-010 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.264 1 NA 0.826 1 NA NA NA NA NA LTS-010 chr2 95537246 95952177 414932 * c(TEKT4, PROM2, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.234570912946468 9 0.118792886992446 1.1461576741329 401 0.29196740927679 4 3 1 -6.92037545210628 LTS-010 chr2 95952178 95952641 464 * PROM2 0.395 1 NA 1.01457827529274 9 0.290676127521871 3 3 0 -5.76443249346573 LTS-010 chr2 95952642 96541739 589098 * c(TRIM43, PROM2, KCNIP3, FAHD2A, TRIM43B) 0.417652741866195 2 0.0381837661840736 1.15947113550674 358 0.333177242203945 4 2 2 -7.1683071031205 LTS-010 chr2 96541740 96551704 9965 * character(0) NA 0 NA 0.868 1 NA NA NA NA NA LTS-010 chr2 96551705 96619776 68072 * character(0) 0.344960887613556 30 0.0633372654556723 0.626830169918863 78 0.20705016838383 3 2 1 -7.02187410393339 LTS-010 chr2 96619777 96628099 8323 * character(0) NA 0 NA 1.243 1 NA NA NA NA NA LTS-010 chr2 96628100 98916729 2288630 * c(MIR3127, ACTR1B, ARID5A, COX5B, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, ANKRD36, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, LINC01125, FAHD2CP, ZAP70, LMAN2L, FER1L5, NEURL3, CIAO1) 0.349755293218381 36 0.0880201275683173 1.08173632489902 2787 0.245894607251958 3 2 1 -6.74185762643481 LTS-010 chr2 98916730 101612584 2695855 * c(TXNDC9, MGAT4A, CNGA3, NMS, LYG1, MITD1, C2orf15, LONRF2, VWA3B, LYG2, UNC50, KIAA1211L, INPP4A, AFF3, NPAS2, COA5, MRPL30, REV1, LIPT1, PDCL3, TSGA10, CHST10, EIF5B) 0.369177312071018 57 0.0830855878734736 1.73510619723845 2262 0.392428281528586 5 3 2 -6.83525145529143 LTS-010 chr2 101612585 101612615 31 * NPAS2 0.411 1 NA 0.772 1 NA NA NA NA NA LTS-010 chr2 101612616 103121798 1509183 * c(MIR4772, MIR5696, TBC1D8, CREG2, RNF149, IL1R1, SLC9A4, NPAS2, CNOT11, RPL31, SNORD89, RFX8, IL1R2, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4) 0.402537627306051 36 0.0485683285658724 1.71360755639236 1347 0.399787760694114 5 3 2 -6.74130269158563 LTS-010 chr2 103121799 103121804 6 * SLC9A4 NA 0 NA 0.789 1 NA NA NA NA NA LTS-010 chr2 103121805 103142923 21119 * SLC9A4 NA 0 NA 0.761153806535253 41 0.126584551903018 2 NA NA -5.76441255166673 LTS-010 chr2 103142924 103148820 5897 * SLC9A4 NA 0 NA 1.491 1 NA NA NA NA NA LTS-010 chr2 103148821 103433624 284804 * c(TMEM182, SLC9A4, SLC9A2, MFSD9) 0.472197881015994 4 0.0235088635766739 1.4556152863765 352 0.342582645884939 4 2 2 -7.45532174796078 LTS-010 chr2 103433625 103434073 449 * TMEM182 NA 0 NA 1.59926725370685 9 0.162109873576877 4 NA NA -5.76452106222823 LTS-010 chr2 104995569 105475259 479691 * c(LOC100287010, LINC01158, LINC01102, LINC01114, POU3F3) 0.047 1 NA 0.764516255437148 75 0.260969921293278 2 2 0 -5.76444002551129 LTS-010 chr2 105475260 120620159 15144900 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LOC100507334, MIR4782, ACTR3, MERTK, EDAR, RABL2A, GPR45, RPL23AP7, FBLN7, C2orf76, TMEM37, TTL, CKAP2L, CBWD2, LINC01106, SEPT10, SULT1C2P1, DBI, CCDC138, C1QL2, FOXD4L1, CFAP221, EN1, LINC00116, FHL2, PSD4, IL36RN, IL36B, IL37, IL36A, SULT1C4, LOC285000, PLGLA, RGPD4, SH3RF3, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, DPP10-AS1, LIMS1, FLJ42351, NA NA NA NA NA NA NA NA NA LTS-010 LINC01191, SULT1C3, NPHP1, INSIG2, MIR4435-2HG, CCDC93, STEAP3, ACOXL, IL36G, DPP10, PTPN4, RANBP2, SLC5A7, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC20A1, SULT1C2, BUB1, RGPD8, RGPD4-AS1, PAX8, MALL, C2orf49, UXS1, SLC35F5, TMEM177, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, TMEM87B, MARCO, DDX18, TGFBRAP1, GCC2) 0.0495990519028607 137 0.0226627693885578 0.7712787093153 6509 0.637957974204157 2 2 0 -6.77000944076563 LTS-010 NA NA NA NA LTS-010 chr2 120620160 120936299 316140 * c(EPB41L5, PTPN4) NA 0 NA 0.4134572919928 460 0.116919090278267 1 NA NA -5.77189660713545 LTS-010 chr2 120936300 128949893 8013594 * c(RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, EPB41L5, RALB, TSN, TMEM185B, SAP130, AMMECR1L, NIFK, SFT2D3, LINC01101) 0.0487111414035816 53 0.0246290917931301 0.77176371245628 3259 0.332792054489554 2 2 0 -6.778398794766 LTS-010 chr2 128949894 129075877 125984 * c(UGGT1, HS6ST1) 0.38 1 NA 0.796266702411982 127 0.209170262227151 2 2 0 -5.7676551377689 LTS-010 chr2 129075878 131116404 2040527 * c(RAB6C-AS1, TUBA3E, PTPN18, MED15P9, LOC389033, FAR2P1, SMPD4, POTEF, MZT2B, RAB6C, CCDC115, CCDC74B, IMP4, HS6ST1) 0.140390567895319 9 0.109586089952654 0.786945648001271 499 0.320162514969604 2 2 0 -7.08864032858419 LTS-010 chr2 131116405 131131424 15020 * PTPN18 0.052 1 NA 0.762789152971168 71 0.165362264349594 2 2 0 -5.76441018682573 LTS-010 chr2 131131425 132287824 1156400 * c(CYP4F30P, FAR2P2, MIR4784, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, GPR148, LINC01120, NOC2LP2, LOC440910, POTEE, ARHGEF4, PLEKHB2, CFC1, POTEI, CFC1B, POTEJ, MZT2A, CCDC74A) 0.0417595980119495 43 0.0312762846269573 0.777760659312538 912 0.203878784251076 2 2 0 -6.84543765379106 LTS-010 chr2 132287825 132288362 538 * CCDC74A 0.08 1 NA 0.735281759186327 11 0.096625330765046 2 2 0 -5.76445568280109 LTS-010 chr2 132288363 133174764 886402 * c(MIR663B, GPR39, C2orf27A, C2orf27B, ANKRD30BL, CCDC74A) 0.275235753015235 9 0.119659702675731 0.690364875486148 83 0.297194731108491 2 1 1 -7.80449680478958 LTS-010 chr2 133174765 133174999 235 * GPR39 0.053 1 NA 0.646985559788987 5 0.380877933201702 2 2 0 -5.76443624761031 LTS-010 chr2 133175000 170393877 37218878 * c(TANK, CCNT2-AS1, LOC100144595, ZEB2-AS1, SNORA70F, MIR3679, LOC100506124, TTC21B-AS1, LOC100507600, LY75-CD302, MIR4774, MIR4785, MIR4773-1, MIR4773-2, CERS6-AS1, DHRS9, PSMD14, STAM2, KLHL41, TBR1, GALNT5, NXPH2, FMNL2, GALNT13, NOSTRIN, LYPD1, XIRP2, BBS5, ACMSD, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, SLC38A11, WDSUB1, UPP2, DARS, DPP4, FAP, COBLL1, PLA2R1, RAB3GAP1, UBXN4, R3HDM1, CERS6, GCA, GALNT3, NA NA NA NA NA NA NA NA NA LTS-010 EPC2, ARL5A, GCG, MMADHC, STK39, GPD2, AHCTF1P1, GPR39, GRB14, BAZ2B, HNMT, SPOPL, NCKAP5, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LCT, TEX41, LRP2, LY75, MIR128-1, MCM6, MGAT5, NEB, NR4A2, ORC4, LRP1B, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, SPC25, ERMN, G6PC2, RBMS1, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, YY1P2, MARCH7, TNFAIP6, PABPC1P2, CACNB4, CXCR4, FASTKD1, GTDC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 TTC21B, CSRNP3, MAP3K19, THSD7B, TMEM163, ZRANB3, PKP4, TANC1, ABCB11, B3GALT1, KYNU, ACVR1, KCNH7, CCNT2, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.05369890632656 220 0.0254151107391111 0.773334358754862 14459 0.199164190828735 2 2 0 -6.84494642471722 LTS-010 NA NA NA NA LTS-010 chr2 170393878 170394445 568 * FASTKD1 NA 0 NA 0.503 1 NA NA NA NA NA LTS-010 chr2 170394446 170669008 274563 * c(PHOSPHO2-KLHL23, CCDC173, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.0529869195970423 8 0.0298301740811931 0.663441135867839 489 0.191753930463327 2 2 0 -6.82130766436509 LTS-010 chr2 170669009 170671872 2864 * METTL5 NA 0 NA 0.953 1 NA NA NA NA NA LTS-010 chr2 170671873 172549505 1877633 * c(NA, UBR3, MYO3B, DYNC1I2, GAD1, GORASP2, METTL5, SP5, LINC01124, METTL8, CYBRD1, DCAF17, TLK1) 0.0588322438771925 42 0.0296072333975014 0.746192125889266 1475 0.188658572277961 2 2 0 -6.75773050387164 LTS-010 chr2 172549506 172563023 13518 * DYNC1I2 NA 0 NA 1.351 1 NA NA NA NA NA LTS-010 chr2 172563024 179264161 6701138 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, HOXD-AS2, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, HAGLR, MIR10B, NFE2L2, PDE11A, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, LNPK, CDCA7, HAT1, AGPS, SLC25A12, RAPGEF4-AS1, NA NA NA NA NA NA NA NA NA LTS-010 TTC30A, CIR1) 0.0389123219032161 78 0.02454978902541 1.06928233474776 4166 0.277652307051062 3 3 0 -6.78014869699082 LTS-010 NA NA NA NA LTS-010 chr2 179264162 179296161 32000 * c(MIR548N, PRKRA) NA 0 NA 0.713 1 NA NA NA NA NA LTS-010 chr2 179296162 179318377 22216 * c(MIR548N, DFNB59, PRKRA) NA 0 NA 0.866258313996035 75 0.188945364141676 2 NA NA -5.77048284612842 LTS-010 chr2 179318378 179319093 716 * c(MIR548N, DFNB59) NA 0 NA 1.523 1 NA NA NA NA NA LTS-010 chr2 179319094 179632710 313617 * c(MIR548N, TTN-AS1, DFNB59, FKBP7, PLEKHA3, TTN) 0.0351384388428862 25 0.0108286656611052 1.15386916479916 2916 0.225108768301522 3 3 0 -6.78476867995396 LTS-010 chr2 179632711 179843428 210718 * c(CCDC141, TTN) NA 0 NA 1.17808714801637 518 0.260364369448199 3 NA NA -5.77275923526425 LTS-010 chr2 179843429 179912010 68582 * CCDC141 NA 0 NA 0.659 1 NA NA NA NA NA LTS-010 chr2 179912011 179966545 54535 * c(CCDC141, SESTD1) 0.071 1 NA 0.669218071958941 13 0.300642495759349 2 2 0 -5.77056641948323 LTS-010 chr2 179966546 196601733 16635188 * c(NEMP2, MIR1258, MIR1245A, MIR3129, MIR3606, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, TMEFF2, FRZB, HIBCH, MSTN, GLS, SLC40A1, INPP1, ITGA4, ITGAV, CERKL, FSIP2, MYO1B, NAB1, NEUROD1, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, MFSD6, ZC3H15, SLC39A10, CWC22, PCGEM1, OSGEPL1, NABP1, SSFA2, STAT1, STAT4, MIR561, NA NA NA NA NA NA NA NA NA LTS-010 TFPI, WDR75, C2orf88, SDPR, SESTD1, ZNF804A, ORMDL1) 0.0577688814736151 109 0.0306257954607629 0.761198604879385 6319 0.335731348840472 2 2 0 -6.73813749108919 LTS-010 NA NA NA NA LTS-010 chr2 196601734 198669447 2067714 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.0544711020584461 31 0.0354513144879669 0.690751689144163 2135 0.154435903163915 2 2 0 -7.20229575469705 LTS-010 chr2 198669448 198669546 99 * PLCL1 NA 0 NA 0.748 1 NA NA NA NA NA LTS-010 chr2 198669547 200820289 2150743 * c(TYW5, SATB2-AS1, C2orf69, SATB2, FTCDNL1, PLCL1, C2orf47) 0.0649347154698809 4 0.0362307420109866 0.811162787575508 469 0.180148617742952 2 2 0 -6.92623556285725 LTS-010 chr2 200820290 200820323 34 * c(TYW5, C2orf47) NA 0 NA 1.052 1 NA NA NA NA NA LTS-010 chr2 200820324 203826688 3006365 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.0618612080063472 45 0.0349593848037775 0.722331042018083 3489 0.185566527859957 2 2 0 -6.90549491890921 LTS-010 chr2 203826689 234354320 30527632 * c(LOC100129175, LOC100130451, MIR1471, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4777, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, NMUR1, SP140, CHRND, CHRNG, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, DIS3L2, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, CPO, MDH1B, FBXO36, CPS1, CREB1, NA NA NA NA NA NA NA NA NA LTS-010 AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, CYP27A1, DAW1, C2orf57, DES, EEF1B2, PIKFYVE, LOC200726, TIGD1, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, GIGYF2, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 RUFY4, CPS1-IT1, ICOS, GMPPA, AGFG1, ACADL, DNAJB2, HTR2B, IDH1, SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, KCNJ13, PLEKHM3, C2orf80, RESP18, C2orf82, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, NCL, ATIC, NDUFS1, NEU2, NPPC, MIR375, SMARCAL1, PAX3, PDE6D, CAB39, SERPINE2, PRKAG3, FEV, INO80D, PID1, ATG16L1, ANKZF1, ASIC4, DOCK10, MREG, PECR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 C2orf83, MFF, PSMD1, CYP20A1, PTH2R, PTMA, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, SNORD20, RPE, RPL37A, BCS1L, SNORA41, SAG, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, PRSS56, COPS7B, RAPH1, NBEAL1, SLC4A3, MRPL44, SNORA75, LOC654841, SLC11A1, SP100, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, CARF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 NHEJ1, FAM124B, TM4SF20, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ITM2C, RHBDD1, CUL3, PLCD4, DGKD, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, DNER, GPR55, B3GNT7, TRIP12, SP140L, CD28, ECEL1, EIF4E2, TTLL4) 0.0570960641276357 306 0.0387653624632162 0.775131634050678 20908 0.254616425780095 2 2 0 -6.81025042331262 LTS-010 NA NA NA NA LTS-010 chr2 234354321 234356807 2487 * DGKD 0.066 1 NA 0.70948918936097 9 0.271226381460211 2 2 0 -5.76451535753788 LTS-010 chr2 234356808 234384596 27789 * c(USP40, DGKD) 0.176087410155571 9 0.18048322482836 0.700177805582276 171 0.230523823264615 1 1 0 -6.91874955928211 LTS-010 chr2 234384597 234385585 989 * USP40 0.052 1 NA 0.668616460992976 21 0.158953542179558 2 2 0 -5.76481503839413 LTS-010 chr2 234385586 237489904 3104319 * c(LOC100286922, ARL4C, AGAP1, MSL3P1, SH3BP4, GBX2, ASB18, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40, HJURP, ACKR3, SPP2, TRPM8, IQCA1) 0.0571463431090275 70 0.019841066223938 0.756902644115474 1690 0.210392055621585 2 2 0 -6.74223096898999 LTS-010 chr2 237489905 238166147 676243 * c(COPS8, ACKR3) 0.076 1 NA 0.848991060230089 147 0.246766103867014 2 2 0 -5.84039102097791 LTS-010 chr2 238166148 238261113 94966 * COL6A3 0.107822236359324 9 0.144331889908102 0.745125078858753 138 0.256727028605787 2 2 0 -6.81275639744626 LTS-010 chr2 238261114 238267058 5945 * COL6A3 0.067 1 NA 0.67832115815482 34 0.168677756041644 2 2 0 -5.76612443365639 LTS-010 chr2 238267059 238657996 390938 * c(COL6A3, PRLH, RAB17, MLPH, LRRFIP1) 0.0471854346611579 4 0.0324294105198763 0.799585407533797 477 0.16904835574888 2 2 0 -6.78625249700419 LTS-010 chr2 238657997 238659737 1741 * LRRFIP1 NA 0 NA 0.488 1 NA NA NA NA NA LTS-010 chr2 238659738 239353375 693638 * c(UBE2F-SCLY, RAMP1, UBE2F, LOC151174, TRAF3IP1, ESPNL, RBM44, KLHL30, SCLY, ASB1, HES6, LOC643387, ILKAP, PER2, LRRFIP1) 0.0492782444130606 42 0.0247335158446891 0.706552582471822 1231 0.202346385883047 2 2 0 -6.82353817119667 LTS-010 chr2 239353376 239354958 1583 * ASB1 NA 0 NA 0.982 1 NA NA NA NA NA LTS-010 chr2 239354959 242815774 3460816 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2 NA NA NA NA NA NA NA NA NA LTS-010 ) 0.052040565830599 109 0.0306164521519351 0.791744424153403 4221 0.399761824244075 2 2 0 -6.75704633733081 LTS-010 NA NA NA NA LTS-010 chr2 242815775 243037218 221444 * LOC728323 NA 0 NA 0.803724012175772 38 0.159240212367066 2 NA NA -5.77891187935054 LTS-010 chr3 239351 361508 122158 * CHL1 0.228 1 NA 1.54639526475351 9 0.113396428515187 4 4 0 -5.79262431213828 LTS-010 chr3 361509 4461767 4100259 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.25015273414618 11 0.0424319776497953 1.51823027377639 926 0.291789414798224 4 3 1 -6.87891648896416 LTS-010 chr3 4461768 4461772 5 * SUMF1 NA 0 NA 1.377 1 NA NA NA NA NA LTS-010 chr3 4461773 5253052 791280 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.24618304320478 4 0.0402688879078294 1.35318507311766 647 0.293458615988243 4 3 1 -6.87715844527894 LTS-010 chr3 5253053 5255026 1974 * EDEM1 NA 0 NA 1.476 1 NA NA NA NA NA LTS-010 chr3 5255027 8809663 3554637 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.250043171997 25 0.0775629206945346 1.56839436493755 582 0.353516729172172 4 3 1 -6.87381357426179 LTS-010 chr3 8809664 10370584 1560921 * c(GHRLOS, SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, FANCD2OS, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, GHRL, SETD5, EMC3, BRK1, RAD18, CIDEC, SEC13, MTMR14, VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, TATDN2, SRGAP3) 0.263457146674213 74 0.0538394847186738 1.38339103223654 2976 0.321761598244159 4 3 1 -6.74834998405815 LTS-010 chr3 10370585 11623812 1253228 * c(MIR885, SLC6A1-AS1, ATG7, LINC00606, HRH1, ATP2B2, SLC6A1, SLC6A11, VGLL4) 0.248737489875753 13 0.0511275428807765 1.53676774351778 751 0.335407932354844 4 3 1 -6.81740563228407 LTS-010 chr3 11623813 11744562 120750 * VGLL4 NA 0 NA 0.9221078850982 39 0.297486528800572 3 NA NA -5.79024578118623 LTS-010 chr3 11744563 11831863 87301 * VGLL4 NA 0 NA 1.297 1 NA NA NA NA NA LTS-010 chr3 11831864 15076281 3244418 * c(MKRN2OS, FGD5P1, FGD5-AS1, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00620, TPRXL, CCDC174, PPARG, TMEM40, RAF1, RPL32, SLC6A6, SYN2, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, IQSEC1) 0.260083873428145 77 0.0450072789738376 1.45514251319441 2734 0.364026317125409 4 3 1 -6.74032799020774 LTS-010 chr3 15076282 15079501 3220 * NR2C2 NA 0 NA 1.296 1 NA NA NA NA NA LTS-010 chr3 15079502 29322525 14243024 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, LINC00693, BTD, MIR563, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, NA NA NA NA NA NA NA NA NA LTS-010 EOMES, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.270002923451287 90 0.0518255560960919 1.37085118643779 4614 0.35842671918147 4 3 1 -6.90133856228627 LTS-010 NA NA NA NA LTS-010 chr3 29322526 42958563 13636038 * c(ACVR2B-AS1, PDCD6IP, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, NA NA NA NA NA NA NA NA NA LTS-010 EIF1B-AS1, MYD88, NKTR, VILL, DYNC1LI1, SS18L2, PLCD1, CMTM6, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, VIPR1, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.266586316964324 135 0.0413784552833508 1.46226669417033 8856 0.874487933771636 4 3 1 -6.73674882987398 LTS-010 NA NA NA NA LTS-010 chr3 42958564 42958568 5 * ZNF662 NA 0 NA 1.262 1 NA NA NA NA NA LTS-010 chr3 42958569 46716087 3757519 * c(LOC100132146, KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, LIMD1, CCRL2, ZNF502 NA NA NA NA NA NA NA NA NA LTS-010 ) 0.256890964576857 66 0.0568227932860559 1.39610950882426 4259 0.513944097854643 4 3 1 -6.75249966181982 LTS-010 NA NA NA NA LTS-010 chr3 46716088 47059256 343169 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.254434044006499 6 0.0347586919585111 1.60055773666896 841 0.641884815905723 4 3 1 -6.78897784804174 LTS-010 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 1.203 1 NA NA NA NA NA LTS-010 chr3 47061216 50359175 3297960 * c(BSN-AS2, MIR1226, MIR711, MIR4271, MIR4793, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, CSPG5, USP19, SLC38A3, WDR6, TREX1, COL7A1, LSMEM2, DAG1, CELSR3, KLHDC8B, DHX30, SCAP, LAMB2P1, KLHL18, NAT6, NDUFAF3, PTPN23, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SETD2, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, C3orf62, AMIGO3, RHOA, CDHR4, FAM212A, LAMB2, MIR191, MAP4, TMEM89, MST1, MST1R, NA NA NA NA NA NA NA NA NA LTS-010 MIR425, SHISA5, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLXNB1, P4HTM, ELP6, QRICH1, DALRD3, PRKAR2A, QARS, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, SLC26A6, SMARCC1, TCTA, UBA7, USP4, UQCRC1, IFRD2, SEMA3B, SLC25A20, CAMKV, CCDC51, CAMP, HYAL3, ATRIP, NICN1, MON1A, HYAL2, BSN, UCN2, IP6K1, CDC25A) 0.27178920516683 75 0.03449751002896 1.43495085713085 8321 0.304770473016991 4 3 1 -6.75968503746742 LTS-010 NA NA NA NA LTS-010 chr3 50359176 51992175 1633000 * c(PARP3, IQCF4, MIR4787, NPRL2, CYB561D2, TMEM115, RASSF1, TUSC2, CISH, GPR62, IQCF1, DOCK3, RAD54L2, GRM2, RBM15B, IQCF2, IQCF5, IQCF3, IQCF6, C3orf18, ZMYND10, TEX264, HEMK1, PCBP4, MAPKAPK3, MANF, HYAL2, RRP9, CACNA2D2, DCAF1) 0.238054072321532 31 0.0426128104318787 1.50881928183701 2155 0.322670047038216 4 3 1 -6.97633670157366 LTS-010 chr3 51992176 52183341 191166 * c(LINC00696, ABHD14A-ACY1, DUSP7, ABHD14A, POC1A, PCBP4, RPL29, ABHD14B, ACY1) NA 0 NA 1.46936058957339 412 0.290869272056436 4 NA NA -5.76492148189399 LTS-010 chr3 52183342 52264907 81566 * c(TWF2, ALAS1, POC1A, TLR9) 0.048 1 NA 1.11741132376809 197 0.304819011977916 3 3 0 -5.76451450494779 LTS-010 chr3 52264908 53324915 1060008 * c(SNORD19B, TMEM110-MUSTN1, NISCH, TWF2, GLYCTK, PPM1M, STAB1, DNAH1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, SFMBT1, PHF7, TLR9, PBRM1, PRKCD, DCP1A, GLT8D1, SEMA3G, NT5DC2, NEK4, SNORD19, SNORD69, TKT, TNNC1, WDR82, BAP1, RFT1) 0.0356373891146699 53 0.0142392219826273 1.11463785971196 3109 0.2596993277703 3 3 0 -6.75184152656226 LTS-010 chr3 53324916 53700550 375635 * c(DCP1A, CACNA1D) 0.049 1 NA 1.0517984493537 87 0.241134448472305 3 3 0 -5.7727567122552 LTS-010 chr3 53700551 56592860 2892310 * c(MIR3938, CACNA2D3-AS1, ERC2, CCDC66, CHDH, IL17RB, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, CACNA1D, ESRG, ACTR8) 0.0431884556957034 10 0.015939120288007 1.16631410209642 1076 0.273919256880969 3 3 0 -6.86812356705904 LTS-010 chr3 56592861 56787613 194753 * c(FAM208A, CCDC66, ARHGEF3) 0.0398740181604552 23 0.0209224051096695 0.920008100929566 426 0.256883012863264 3 3 0 -6.79448388424826 LTS-010 chr3 56787614 56788966 1353 * ARHGEF3 NA 0 NA 1.362 1 NA NA NA NA NA LTS-010 chr3 56788967 59033091 2244125 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.0410431924627712 63 0.0430549964451747 1.07042539146954 2652 0.264244656991699 3 3 0 -6.75192063973831 LTS-010 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.953 1 NA NA NA NA NA LTS-010 chr3 59035205 67061392 8026188 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.0337845800582032 31 0.0181240053490522 1.18741279324179 2197 0.47650703633074 3 3 0 -6.88297784417945 LTS-010 chr3 67061393 67061488 96 * KBTBD8 0.056 1 NA 0.097 1 NA NA NA NA NA LTS-010 chr3 67061489 69928548 2867060 * c(MIR3136, MIR4272, ARL6IP5, FAM19A4, FRMD4B, EOGT, FAM19A1, MITF, LMOD3, TMF1, KBTBD8, SUCLG2, UBA3) 0.0347146624746569 13 0.0152853205933348 1.03596453991343 963 0.251428702913131 3 3 0 -6.86343920084432 LTS-010 chr3 69928549 69985717 57169 * MITF NA 0 NA 1.2 1 NA NA NA NA NA LTS-010 chr3 69985718 71161899 1176182 * c(FOXP1, MITF) 0.0286150533633803 2 0.000707106781186548 1.22565540958481 299 0.388843682468898 4 4 0 -7.1383163108668 LTS-010 chr3 71161900 71179606 17707 * FOXP1 NA 0 NA 0.755 1 NA NA NA NA NA LTS-010 chr3 71179607 74344356 3164750 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.0514773163799332 11 0.0281007926125678 0.767493390375556 895 0.230132917477156 2 2 0 -6.74404855865883 LTS-010 chr3 74344357 75679988 1335632 * c(MIR1324, CNTN3, FAM86DP) 0.312 1 NA 0.816100198403716 97 0.148791204694705 2 2 0 -5.92706928585056 LTS-010 chr3 75679989 75716285 36297 * MIR1324 0.298136368168655 34 0.139382445565815 0.823299390271649 76 0.232077881664528 3 2 1 -6.83669652643613 LTS-010 chr3 75716286 75790864 74579 * ZNF717 0.326658018623724 153 0.127131504768267 0.534259019978186 274 0.155060065847878 2 1 1 -7.43748911263011 LTS-010 chr3 75790865 75986794 195930 * c(ZNF717, ROBO2) 0.391232302041753 4 0.0301109061083632 0.722593751960432 16 0.17890700563887 2 1 1 -8.21370619264594 LTS-010 chr3 75986795 78663956 2677162 * c(ROBO1, ROBO2) 0.067 1 NA 0.811605042384924 255 0.159910537556519 2 2 0 -5.99975927096853 LTS-010 chr3 78663957 89530956 10867000 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.063332856655269 21 0.0245293798574378 0.789581057973092 1351 0.388428651443717 2 2 0 -6.85351139831336 LTS-010 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 0.863626934009284 31 0.344982489815889 2 NA NA -5.82271360992577 LTS-010 chr3 93591838 93593119 1282 * PROS1 0.34 1 NA 1.02518357520555 25 0.157033170593562 3 3 0 -5.76457200525576 LTS-010 chr3 93593120 123332352 29739233 * c(ZBTB11-AS1, LOC100129550, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MYLK-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, PDIA5, ADCY5, HHLA2, FSTL1, FILIP1L, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, NA NA NA NA NA NA NA NA NA LTS-010 ARL13B, DHFR2, GABRR3, HACD2, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, FAM162A, SEC22A, ZBTB11, MORC1, GOLGB1, GPR15, TUSC7, LINC00636, EPHA6, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, LNP1, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 STX19, CD200, MYLK, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, SEMA5B, WDR5B, PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, EAF2, PROS1, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, OR5AC2, PARP9, ARL6, CMSS1, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.338801148758765 291 0.055833917381229 1.07452274182847 15169 0.348286114440445 3 2 1 -6.83360371220324 LTS-010 NA NA NA NA LTS-010 chr3 123332353 124303603 971251 * c(MYLK-AS1, MIR5002, MYLK, ROPN1, CCDC14, KALRN) 0.341356988693592 11 0.0627552243388404 1.19698525299269 764 0.282356721830796 3 2 1 -6.78590037871474 LTS-010 chr3 124303604 124303665 62 * KALRN NA 0 NA 1.001 1 NA NA NA NA NA LTS-010 chr3 124303666 125313724 1010059 * c(MIR5092, OSBPL11, ITGB5, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.346697984636791 56 0.0690318743431226 1.03334459775085 1287 0.248359002359941 3 2 1 -6.77326411057801 LTS-010 chr3 125313725 125313792 68 * OSBPL11 NA 0 NA 1.343 1 NA NA NA NA NA LTS-010 chr3 125313793 127790544 2476752 * c(FAM86JP, MIR548I1, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, OSBPL11, TPRA1, UROC1, ROPN1B, C3orf22, CHST13, KBTBD12, ALG1L, NUP210P1, KLF15, SEC61A1, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, TXNRD3NB, ZXDC, ABTB1, CHCHD6, RUVBL1) 0.353980782729759 54 0.054619927480613 1.13384585119027 1943 0.245139986426639 3 2 1 -6.76652488889413 LTS-010 chr3 127790545 127872664 82120 * c(EEFSEC, RUVBL1) NA 0 NA 1.10271130139516 70 0.213438833902843 3 NA NA -5.76441088723072 LTS-010 chr3 127872665 127965740 93076 * c(EEFSEC, RUVBL1) NA 0 NA 1.326 1 NA NA NA NA NA LTS-010 chr3 127965741 128205860 240120 * c(DNAJB8, GATA2, DNAJB8-AS1, EEFSEC) 0.492 1 NA 1.5106085417619 155 0.328798631141926 4 4 0 -5.76736596603179 LTS-010 chr3 128205861 130098327 1892467 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, LINC01565, COL6A5, GATA2, GP9, ACAD9, RAB43, H1FX-AS1, IFT122, HMCES, ISY1, KIAA1257, RHO, RPN1, ALG1L2, COL6A4P2, LOC653712, SNORA7B, TRH, FAM86HP, CNBP, RAB7A, EFCC1, MBD4, H1FX, LOC90246, EFCAB12) 0.432488315349212 30 0.110407687555099 1.38875352898002 1821 0.371650018198815 4 2 2 -6.75168234009121 LTS-010 chr3 130098328 141162280 11063953 * c(NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, PISRT1, NUDT16P1, DZIP1L, EPHB1, MRAS, DNAJC13, ZBTB38, COL6A5, ANAPC13, ARMC8, NPHP3, ATP2C1, TRIM42, ASTE1, PIK3R4, KY, LOC339874, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, IL20RB, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, NA NA NA NA NA NA NA NA NA LTS-010 BPESC1, RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, SNORA58, TF, PRR23A, NEK11, UBA5, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, SPSB4, PXYLP1, COPB2) 0.459148196023844 97 0.0373297020892961 1.47657750480776 6782 0.326812723921523 4 2 2 -6.85724095622157 LTS-010 NA NA NA NA LTS-010 chr3 141162281 171087469 29925189 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, LOC101243545, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, PLCH1, TNIK, NA NA NA NA NA NA NA NA NA LTS-010 U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GPR160, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, CLDN11, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ATR, PRKCI, MYNN, EIF5A2, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SSR3, SCARNA7, MIR551B, MIR569, TERC, TFDP2, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, LRRC31, PHC3, ARL14, EIF2A, ZIC4, HPS3, ACTRT3, GFM1, B3GALNT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GMPS, SLC33A1, EGFEM1P, CHST2, RNF7, TSC22D2, P2RY14) 0.456844071129578 226 0.0476356742696778 1.40453102771403 12713 0.66581634344199 4 2 2 -6.79794240500924 LTS-010 NA NA NA NA LTS-010 chr3 171087470 171455906 368437 * c(TNIK, PLD1) NA 0 NA 1.43722121331241 197 0.260722318908296 4 NA NA -5.76443373274882 LTS-010 chr3 171455907 171510113 54207 * PLD1 NA 0 NA 1.134 1 NA NA NA NA NA LTS-010 chr3 171510114 172028521 518408 * c(TMEM212, PLD1, FNDC3B) 0.222 1 NA 1.04906191394065 115 0.209399274450393 3 3 0 -5.7814225671277 LTS-010 chr3 172028522 183749672 11721151 * c(LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, KCNMB2, DNAJC19, TTC14, ECT2, HTR3D, NLGN1, MCF2L2, ATP11B, NAALADL2, GHSR, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, MCCC1, MRPL47, NCEH1, GNB4, ZMAT3, FNDC3B, SOX2, TBL1XR1, MAP6D1, FXR1, SPATA16, B3GNT5, ACTL6A, TNFSF10, USP13, KLHL6) 0.328296494093883 81 0.0707792495050197 1.07670568501552 4750 0.270622345473461 3 2 1 -6.82026956281608 LTS-010 chr3 183749673 183750658 986 * HTR3D NA 0 NA 1.228 1 NA NA NA NA NA LTS-010 chr3 183750659 194080725 10330067 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, NA NA NA NA NA NA NA NA NA LTS-010 IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.335122188171582 142 0.058302065195954 1.12250141748218 7368 0.44399638029727 3 2 1 -6.76420460314044 LTS-010 NA NA NA NA LTS-010 chr3 194080726 195346710 1265985 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.310867134786472 26 0.0664427110084609 1.03093166379298 1034 0.252937702653184 3 2 1 -6.94703217199287 LTS-010 chr3 195346711 195452016 105306 * c(MUC20, MIR570, SDHAP2) 0.295590901986717 11 0.136605869699525 0.642338003542346 80 0.219310755405905 3 2 1 -7.17317984422775 LTS-010 chr3 195452017 195452618 602 * MUC20 NA 0 NA 2.109 1 NA NA NA NA NA LTS-010 chr3 195452619 197362103 1909485 * c(MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, CEP19) 0.326478697094329 86 0.0682544016008733 1.02491305052936 2524 0.425462400274008 3 2 1 -6.8139636881144 LTS-010 chr3 197362104 197770512 408409 * c(MIR922, RPL35A, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) NA 0 NA 1.03977024410581 739 0.226251636434887 3 NA NA -5.78043627635764 LTS-010 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.359 1 NA 0.472652509559443 11 0.0746167176003779 1 1 0 -5.77378694598642 LTS-010 chr4 60304 172309 112006 * c(ZNF595, ZNF718) 0.238367238369599 2 0.0728319984622144 0.376377472893033 78 0.0914218730636103 1 1 0 -8.48789481253705 LTS-010 chr4 172310 263783 91474 * c(ZNF595, ZNF876P) NA 0 NA 1.07 1 NA NA NA NA NA LTS-010 chr4 263784 481678 217895 * c(ZNF721, ZNF732, ZNF141, ABCA11P) 0.112 1 NA 1.56541545276647 262 0.319125578236164 4 4 0 -5.77318683557682 LTS-010 chr4 481679 492998 11320 * c(ZNF721, PIGG) NA 0 NA 2.143 1 NA NA NA NA NA LTS-010 chr4 492999 1714317 1221319 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, FAM53A, DGKQ, GAK, CRIPAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, SLBP, MFSD7, TMEM175, CTBP1-AS2) 0.222117325018461 60 0.0571549855470313 1.74032305379743 1987 0.463089945630979 5 4 1 -6.74646081200012 LTS-010 chr4 1714318 1729425 15108 * c(TACC3, TMEM129) 0.198 1 NA 1.74702373541808 76 0.391837052375136 5 5 0 -5.76443128264614 LTS-010 chr4 1729426 5053674 3324249 * c(MIR943, LOC100133461, STX18-AS1, MIR4800, HTT-AS, MFSD10, TACC3, MXD4, ADD1, OTOP1, ADRA2C, ZBTB49, FGFR3, NSG1, DOK7, LINC00955, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, MSANTD1, FAM86EP, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MSX1, STX18, CYTL1, STK32B, LYAR, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, TNIP2, HAUS3, TMEM128, NOP14, FAM193A) 0.216820395768683 103 0.0598376285095449 1.78096124532184 4105 0.412915291667262 5 4 1 -6.73423279427989 LTS-010 chr4 5053675 5418660 364986 * STK32B NA 0 NA 1.69472483418542 35 0.323559385013404 5 NA NA -5.76949402367764 LTS-010 chr4 5418661 5448294 29634 * STK32B NA 0 NA 1.04 1 NA NA NA NA NA LTS-010 chr4 5448295 5570221 121927 * c(LINC01587, EVC2, STK32B) 0.375 1 NA 1.18497807919005 108 0.296282365110361 3 3 0 -5.76882195646256 LTS-010 chr4 5570222 23793906 18223685 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, MIR378D1, MIR4798, MIR5091, MIR548AX, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, CRMP1, LINC01085, JAKMIP1, TRMT44, ADGRA3, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, FAM184B, GPR78, LOC285484, LINC01097, LINC01096, FAM200B, NA NA NA NA NA NA NA NA NA LTS-010 HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, LAP3, SH3TC1, DCAF16, PPP2R2C, BLOC1S4, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, CPZ, ZNF518B, PROM1, LDB2, SLIT2, MRFAP1, LOC93622, TADA2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.343940986351323 201 0.058587967198884 1.12754736297093 6994 0.590884976658913 3 2 1 -6.75034963827891 LTS-010 NA NA NA NA LTS-010 chr4 23793907 23891745 97839 * PPARGC1A 0.239464982756359 4 0.0311809236553377 1.53843697789057 195 0.278052360440815 4 3 1 -7.10159808550195 LTS-010 chr4 24521822 25032259 510438 * c(DHX15, LGI2, SOD3, MIR573, CCDC149) 0.293744082882398 28 0.0685137764696821 1.08129847125603 421 0.270551962296858 3 2 1 -7.06303467952484 LTS-010 chr4 25032260 25121685 89426 * c(SEPSECS, LGI2) NA 0 NA 1.315 1 NA NA NA NA NA LTS-010 chr4 25121686 25420106 298421 * c(SEPSECS-AS1, ZCCHC4, ANAPC4, SEPSECS, PI4K2B) 0.248 1 NA 1.45912026453177 419 0.332214278695203 4 4 0 -5.76466071901799 LTS-010 chr4 25420107 26417136 997030 * c(SLC34A2, SEL1L3, ANAPC4, RBPJ, SMIM20) 0.291266510142606 13 0.101149102940367 1.06302027445734 390 0.232260835702448 3 2 1 -6.91712524779847 LTS-010 chr4 26417137 26417224 88 * RBPJ NA 0 NA 1.309 1 NA NA NA NA NA LTS-010 chr4 26417225 27021141 603917 * c(RBPJ, TBC1D19, STIM2, CCKAR) 0.234503651635463 3 0.0570116947067295 1.40893958964393 339 0.339452194253865 4 3 1 -6.89687508592194 LTS-010 chr4 27021142 33012539 5991398 * c(MIR4275, PCDH7, STIM2) NA 0 NA 1.58884704406875 281 0.318000021902267 4 NA NA -6.08527504475175 LTS-010 chr4 36067622 36068286 665 * ARAP2 0.429 1 NA 0.714003871971455 15 0.222913970166156 2 2 0 -5.76444473749765 LTS-010 chr4 36068287 40810650 4742364 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.448401504120428 61 0.0424905904080426 0.73078737308297 3071 0.162005600900092 2 1 1 -6.92676111827813 LTS-010 chr4 40810651 42412710 1602060 * c(UCHL1-AS1, ATP8A1, SLC30A9, SHISA3, LIMCH1, DCAF4L1, APBB2, BEND4, TMEM33, UCHL1, NSUN7, PHOX2B) 0.445672268848399 9 0.0349455926326117 0.809358223980936 1309 0.197920653073897 2 1 1 -6.81951291759104 LTS-010 chr4 42412711 42412810 100 * ATP8A1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-010 chr4 42412811 49032874 6620064 * c(ATP8A1, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, KCTD8, GRXCR1, OCIAD1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.449233183434622 106 0.0468779733408588 0.755223758972843 3081 0.18136658735639 2 1 1 -6.74949180916031 LTS-010 chr4 49032875 49064107 31233 * CWH43 NA 0 NA 0.760616125831346 35 0.145309446678864 2 NA NA -5.76441548340373 LTS-010 chr4 52709193 53728524 1019332 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, DCUN1D4, LRRC66, DANCR, SGCB, USP46, RASL11B, SNORA26) 0.458 1 NA 0.814637872659087 625 0.189842152069987 2 2 0 -5.83778534033286 LTS-010 chr4 53728525 56238886 2510362 * c(SRD5A3-AS1, LNX1-AS1, LNX1-AS2, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, RASL11B, SRD5A3, FIP1L1, LNX1) 0.467258064766311 14 0.0207206697248461 0.80669353647852 1048 0.219085603226495 2 1 1 -7.46548715037942 LTS-010 chr4 56238887 62543162 6304276 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, ADGRL3, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.45267756878775 40 0.0383686487268995 0.716430146549118 1667 0.170226034813062 2 1 1 -7.22657201453241 LTS-010 chr4 62543163 62596211 53049 * ADGRL3 NA 0 NA 1.051 1 NA NA NA NA NA LTS-010 chr4 62596212 66535728 3939517 * c(EPHA5-AS1, EPHA5, ADGRL3, TECRL, LOC401134) 0.455957395330795 13 0.0277454084905538 0.837250435417852 509 0.187143149377654 2 1 1 -7.36801438803099 LTS-010 chr4 66535729 69363297 2827569 * c(FTLP10, EPHA5-AS1, CENPC, TMPRSS11B, STAP1, GNRHR, TMPRSS11A, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113, UBA6, TMPRSS11GP, TMPRSS11D) 0.450907716277711 48 0.0456680708486297 0.737215395404744 1174 0.184287119710292 2 1 1 -6.80004871503368 LTS-010 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.01 1 NA NA NA NA NA LTS-010 chr4 69402959 69512322 109364 * UGT2B17 NA 0 NA 0.0955182170095841 39 0.436925108694027 0 NA NA -5.77021415008802 LTS-010 chr4 69512323 69512415 93 * character(0) NA 0 NA 1.96 1 NA NA NA NA NA LTS-010 chr4 69512416 90856480 21344065 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, CNOT6L, NA NA NA NA NA NA NA NA NA LTS-010 C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.451039695691546 280 0.0430688490123469 0.761818188859172 12993 0.250931385620788 2 1 1 -6.74585745816267 LTS-010 NA NA NA NA LTS-010 chr4 90856481 98109018 7252538 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.441772569351353 48 0.0373254269901899 0.817717378493891 1447 0.241258337303419 2 1 1 -7.08191515919704 LTS-010 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-010 chr4 98480011 154710321 56230311 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3140, MIR3684, LINC01095, LOC100507053, GIMD1, SEC24B-AS1, MIR4799, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, CENPE, RRH, PLK4, PRDM5, LSM6, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, ZNF827, SH3D19, NA NA NA NA NA NA NA NA NA LTS-010 MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SGMS2, SYNPO2, EDNRA, EGF, EIF4E, ELF2, TIGD4, TMEM154, ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ARFIP1, ZNF330, LINC01091, RPL34-AS1, RNF175, STPG2, ANK2, GYPA, GYPB, GYPE, H2AFZ, ANXA2P1, HADH, ANXA5, CFI, PRSS48, LRIT3, IL2, PCNAP1, IL15, LINC01061, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 C4orf3, MAD2L1, SMAD1, MANBA, MGST2, NR3C2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, GATB, PITX2, EXOSC9, GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, FBXW7, PPP3CA, ZGRF1, AP1AR, MAML3, TMEM184C, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, ABCE1, SCOC, RPL34, RPS3A, NEUROG2, SLC39A8, SLC7A11-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LINC00616, LEF1-AS1, SFRP2, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, TACR3, MIR577, TLR2, TRPC3, CETN4P, FAM160A1, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, TTC29, CASP6, MND1, SLC10A7, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FHDC1, LAMTOR3, PDE5A, INPP4B, CCNA2, SNORD73A, FLJ20021, PAPSS1, PRMT9, AIMP1, TIFA, NDST3, TRMT10A, TBCK, LRBA, SEC24D) 0.450433343527283 401 0.0438792036586321 0.766563867795663 20914 0.380250999798578 2 1 1 -6.74962578918033 LTS-010 NA NA NA NA LTS-010 chr4 154710322 154722879 12558 * character(0) NA 0 NA 1.167 1 NA NA NA NA NA LTS-010 chr4 154722880 170482883 15760004 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, ANXA10, KLHL2, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, GK3P, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, TRIM61, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, FAM198B, ASIC5, PLRG1, DCHS2, PPID, MARCH1, TMEM144, TMA16, DDX60, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, MSMO1, MIR578, TDO2, TLL1, MAP9, TKTL2, CBR4, NA NA NA NA NA NA NA NA NA LTS-010 DDX60L, LRAT, NAF1, RAPGEF2) 0.430036460963295 125 0.0798792693846116 0.789640546467714 5384 0.32698468146532 2 1 1 -6.859778568262 LTS-010 NA NA NA NA LTS-010 chr4 170482884 170506703 23820 * NEK1 0.467 1 NA 0.867311875951256 29 0.311878923709486 2 2 0 -5.76684715033697 LTS-010 chr4 170506704 170601382 94679 * c(CLCN3, NEK1) NA 0 NA 0.953778622481929 56 0.249364302817144 3 NA NA -5.78336235261278 LTS-010 chr4 170601383 171010938 409556 * c(LOC100506085, CLCN3, AADAT, HPF1, MFAP3L) 0.0831961443368421 6 0.0189631221058137 0.441727077979904 403 0.12876928954914 1 1 0 -7.15550642988078 LTS-010 chr4 171010939 171010991 53 * AADAT NA 0 NA 0.575 1 NA NA NA NA NA LTS-010 chr4 171010992 174090004 3079013 * c(LOC100506122, GALNTL6, AADAT, GALNT7) 0.429429216149425 3 0.0398497176903425 0.820828478581513 119 0.250954663774534 2 1 1 -6.97607381018278 LTS-010 chr4 174090005 174447362 357358 * c(SCRG1, HMGB2, GALNT7, SAP30) 0.475 1 NA 0.726152493471223 191 0.13235146579755 2 2 0 -5.79344730457764 LTS-010 chr4 174447363 186545396 12098034 * c(CLDN24, MIR1305, MIR4276, MIR3945, LINC01093, ADAM29, WDR17, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, CCDC110, FBXO8, PDLIM3, GPM6A, LINC01098, SLC25A4, HPGD, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, NA NA NA NA NA NA NA NA NA LTS-010 CASP3, SNX25, SORBS2, LOC90768, HAND2) 0.438479783632679 84 0.0708232630957156 0.762293159023434 3934 0.307837600977963 2 1 1 -6.73776993512129 LTS-010 NA NA NA NA LTS-010 chr4 186545397 189660629 3115233 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.464108351301483 31 0.0374080952655685 0.840245966302784 1099 0.176637433558067 2 1 1 -7.40678918554915 LTS-010 chr4 189660630 189662252 1623 * character(0) 0.399 1 NA 1.33704372023665 40 0.268136875446774 4 4 0 -5.76448616042545 LTS-010 chr4 189662253 189662278 26 * character(0) NA 0 NA 0.849 1 NA NA NA NA NA LTS-010 chr4 189662279 190946092 1283814 * FRG1 0.359605799566585 10 0.102251813349854 0.713464843393406 109 0.263804274432714 2 1 1 -7.17131337409304 LTS-010 chr4 190946093 190981567 35475 * character(0) NA 0 NA 1.21006047632141 19 0.24055828098344 3 NA NA -5.76763987597599 LTS-010 chr5 140347 163266 22920 * PLEKHG4B 0.446 1 NA 1.92792198620585 69 0.375115063904324 5 5 0 -5.76502932614843 LTS-010 chr5 163267 31411005 31247739 * c(SNORD123, LOC100130744, PDCD6, CDH6, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, CDH9, CDH10, LOC100996325, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, PAPD7, TPPP, EXOC3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, PLEKHG4B, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, FBXL7, ICE1, LINC01018, PP7080, LINC01019, NA NA NA NA NA NA NA NA NA LTS-010 LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, SLC6A18, LRRC14B, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, PMCHL1, FAM134B, FAM105A, NSUN2, CEP72, ANKH, PRDM9, AHRR, SDHA, LINC01021, MRPL36, ANKRD33B, SLC6A3, SLC9A3, BRD9, SRD5A1, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 OTULIN, SEMA5A, ZNF622, TRIP13) 0.447347576727295 243 0.063064736073014 2.15144177367749 7673 0.51304962391356 6 3 3 -6.74971364245784 LTS-010 NA NA NA NA LTS-010 chr5 31411006 31421369 10364 * DROSHA NA 0 NA 1.602 1 NA NA NA NA NA LTS-010 chr5 31421370 31483596 62227 * DROSHA 0.469233805674671 2 0.0254558441227157 1.68446568577372 62 0.344632633446051 4 2 2 -7.24902611446622 LTS-010 chr5 31483597 31485152 1556 * DROSHA 0.354 1 NA 1.33814181985634 10 0.245232791898274 4 4 0 -5.76449537173266 LTS-010 chr5 31485153 43609343 12124191 * c(CCDC152, LOC100132356, MIR4279, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, PDZD2, NNT, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, DROSHA, HMGCS1, LOC340113, PLCXD3, IL7R, C5orf34, ANXA2R, LIFR, NPR3, OXCT1, SLC45A2, RXFP3, NA NA NA NA NA NA NA NA NA LTS-010 ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRKAA1, PRLR, CCL28, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, TMEM267, NIPBL-AS1, LOC648987, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, C6, C7, C9, ZNF131, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.396952860106626 169 0.0450930513159115 1.73713697635495 8444 0.491737914701167 5 3 2 -6.76040218395268 LTS-010 NA NA NA NA LTS-010 chr5 43609344 45696278 2086935 * c(MRPS30, FGF10, NNT, HCN1) NA 0 NA 1.8689744703826 371 0.380083650100601 5 NA NA -5.78477101137662 LTS-010 chr5 49692017 49694961 2945 * EMB 0.331 1 NA 1.02521296156818 57 0.318755334124123 3 3 0 -5.76450035077869 LTS-010 chr5 49694962 50074457 379496 * c(EMB, PARP8) 0.358955885930241 2 0.0615182899632297 1.00793368433516 103 0.234192693695418 3 2 1 -6.79281994120075 LTS-010 chr5 50074458 50084277 9820 * PARP8 NA 0 NA 0.701 1 NA NA NA NA NA LTS-010 chr5 50084278 68850469 18766192 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, NA NA NA NA NA NA NA NA NA LTS-010 FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.452540087401671 101 0.0521504335818244 0.737848751500189 8017 0.235584740365331 2 1 1 -6.95755192808883 LTS-010 NA NA NA NA LTS-010 chr5 68850470 69373289 522820 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.13527406548336 39 0.429636252010739 3 NA NA -5.76593273685559 LTS-010 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.275 1 NA NA NA NA NA LTS-010 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) 0.490016136591956 2 0.00848528137423858 0.481739333422551 61 0.141829157214113 2 1 1 -14.8518488109471 LTS-010 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.684 1 NA NA NA NA NA LTS-010 chr5 70357051 93731907 23374857 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-010 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.448933653721624 220 0.0453004496544549 0.759651270194821 10147 0.493180567198361 2 1 1 -6.73888392076256 LTS-010 NA NA NA NA LTS-010 chr5 93731908 96369179 2637272 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.446435118687395 32 0.0861233115851167 0.714275474925681 2281 0.157319148646286 2 1 1 -6.99431053020731 LTS-010 chr5 96369180 96371242 2063 * character(0) NA 0 NA 1.20936856640862 42 0.307924845085085 3 NA NA -5.76452337640442 LTS-010 chr5 96371243 126394627 30023385 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, NA NA NA NA NA NA NA NA NA LTS-010 PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.451093713761066 200 0.0555772412840339 0.755465196807832 8435 0.210898822371099 2 1 1 -6.77523270459712 LTS-010 NA NA NA NA LTS-010 chr5 126394628 126394633 6 * C5orf63 NA 0 NA 0.795 1 NA NA NA NA NA LTS-010 chr5 126394634 129522129 3127496 * c(KIAA1024L, MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.4356324533139 22 0.0613776190578628 0.817589187054571 1450 0.231211255286259 2 1 1 -6.91252086983368 LTS-010 chr5 129522130 134305725 4783596 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-010 FNIP1, DDX46) 0.446984636164162 57 0.0371232790121176 0.729345327625126 4469 0.187489325003473 2 1 1 -6.89219794127747 LTS-010 NA NA NA NA LTS-010 chr5 134305726 137087498 2781773 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.458906890447419 35 0.0389490509695496 0.818488804088432 1334 0.388419871306352 2 1 1 -6.86607037177536 LTS-010 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.616 1 NA NA NA NA NA LTS-010 chr5 137087505 140222106 3134602 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, NA NA NA NA NA NA NA NA NA LTS-010 VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.46155303550031 46 0.0302627144198595 0.749017607956157 4479 0.178158962709117 2 1 1 -6.93078662897412 LTS-010 NA NA NA NA LTS-010 chr5 140222107 140222569 463 * c(PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1) NA 0 NA 0.087 1 NA NA NA NA NA LTS-010 chr5 140222570 140240675 18106 * c(PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 0.0832114225003867 114 0.0905507172046441 0 NA NA -5.76449332495948 LTS-010 chr5 140240676 140553623 312948 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 0.779162048962089 703 0.168132868623937 2 NA NA -5.76751767790319 LTS-010 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.208 1 NA NA NA NA NA LTS-010 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) NA 0 NA 0.275527598504956 61 0.0555752628069861 1 NA NA -5.91117514057889 LTS-010 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.542 1 NA NA NA NA NA LTS-010 chr5 140559822 146730772 6170951 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, GPR151, PRELID2, SH3RF2, PLAC8L1, DIAPH1, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, NA NA NA NA NA NA NA NA NA LTS-010 PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, ARAP3, TAF7, LOC729080, NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.447427447098564 50 0.0509019104729471 0.770188947682511 4682 0.177300300753096 2 1 1 -6.74653751089826 LTS-010 NA NA NA NA LTS-010 chr5 146730773 146741027 10255 * STK32A NA 0 NA 0.464 1 NA NA NA NA NA LTS-010 chr5 146741028 146771348 30321 * c(DPYSL3, STK32A) 0.124988511426105 2 0.0601040764008565 0.429333028686502 122 0.0994679182071916 1 1 0 -6.84262928985512 LTS-010 chr5 146771349 149749265 2977917 * c(CDX1, SPINK5, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, SLC26A2, ABLIM3, HMGXB3, IL17B, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, PDGFRB, SPINK9, SLC6A7, SPINK1, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, FBXO38, TIGD6, SPINK7, JAKMIP2) 0.436999042569932 72 0.068704368837357 0.791564284457955 3559 0.190792747826517 2 1 1 -6.80868493760061 LTS-010 chr5 149749266 149751486 2221 * TCOF1 NA 0 NA 0.702 1 NA NA NA NA NA LTS-010 chr5 149751487 159996646 10245160 * c(C5orf52, MIR3142, MIR3141, LOC100652758, G3BP1, TNIP1, SLU7, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, LSM11, ZNF300P1, UBLCP1, ADRA1B, SLC36A2, PPP1R2P3, FAM71B, RNF145, EBF1, SLC36A1, FABP6, FAT2, ATP10B, LARP1, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, LOC285626, LOC285627, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, IRGM, NIPAL4, IL12B, ITK, SAP30L-AS1, MIR146A, FNDC9, MFAP3, NA NA NA NA NA NA NA NA NA LTS-010 ATOX1, DCTN4, THG1L, GALNT10, RBM22, NMUR2, RPS14, ZBED8, SGCD, SPARC, TCOF1, TTC1, CCNJL, SAP30L, HAVCR2, SMIM3, ADAM19, TIMD4, ZNF300, MYOZ3, PTTG1, CNOT8, HAND1, MED7, CLINT1, CD74) 0.450399502025104 126 0.0409967749409091 0.760206514915863 6986 0.175773414918298 2 1 1 -6.74608801925532 LTS-010 NA NA NA NA LTS-010 chr5 159996647 160016584 19938 * ATP10B NA 0 NA 1.131 1 NA NA NA NA NA LTS-010 chr5 160016585 168620622 8604038 * c(MIR103B1, NUDCD2, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.455580159339071 33 0.0341403631196183 0.822177374536034 1920 0.211576616792403 2 1 1 -7.38512327553864 LTS-010 chr5 168620623 168671650 51028 * SLIT3 NA 0 NA 0.498 1 NA NA NA NA NA LTS-010 chr5 168671651 180374817 11703167 * c(FAM196B, LOC100268168, MIR1229, MIR4281, MIR3912, LOC100507387, MIR4634, MIR378E, HEIH, RGS14, CPLX2, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, C5orf47, C5orf58, OR2Y1, NKX2-5, CREBRF, DBN1, DOCK2, DRD1, DUSP1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FOXI1, TBC1D9B, N4BP3, FAF2, FLT4, FBXW11, ZNF346, EIF4E1B, RASGEF1C, GABRP, LINC01366, TSPAN17, PRELID1, EFCAB9, SH3PXD2B, LOC285593, FAM153A, NA NA NA NA NA NA NA NA NA LTS-010 ARL10, ZNF454, C5orf60, GRK6, GRM6, TLX3, KCNIP1, ZNF354C, HK3, HNRNPAB, HNRNPH1, HRH2, PRR7-AS1, PFN3, ZNF879, SIMC1, KCNMB1, LCP2, LTC4S, MGAT1, FLJ16171, MIR340, MSX2, NPM1, RPL26L1, C5orf45, DDX41, NOP16, HMP19, UIMC1, RAB24, NEURL1B, FAM193B, TMED9, CDHR2, SPDL1, NHP2, RNF130, MAPK9, PROP1, KIAA1191, ERGIC1, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, RANBP17, FAM153C, SLC34A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SLIT3, BNIP1, SNCB, SNORA74B, STK10, MIR585, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, CPEB4, PRR7, CANX, MXD3, THOC3, PHYKPL, STC2, FGF18, SQSTM1, ATP6V0E1, UNC5A, BOD1, COL23A1, UBTD2, SCGB3A1, PDLIM7, SFXN1, ADAMTS2, MAML1, GFPT2) 0.446573814201187 257 0.0511093355865182 0.756913036529278 10641 0.201383680655441 2 1 1 -6.74307568833007 LTS-010 NA NA NA NA LTS-010 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.6 1 NA NA NA NA NA LTS-010 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) 0.446 1 NA 1.46559903310004 64 0.347588015575089 4 4 0 -5.76448710122409 LTS-010 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.822 1 NA NA NA NA NA LTS-010 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.45234004984048 38 0.0411021348685675 0.737143377685527 544 0.184371616789768 2 1 1 -6.75845782126317 LTS-010 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.890829742632755 21 0.246114704191049 2 NA NA -5.76462540596257 LTS-010 chr6 203389 312023 108635 * DUSP22 0.338 1 NA 1.02554735665186 25 0.275196638787613 3 3 0 -5.76883282055505 LTS-010 chr6 312024 351259 39236 * DUSP22 0.287268816224192 7 0.0580340622475489 1.06482267600723 86 0.173889041543192 4 3 1 -6.89400969646105 LTS-010 chr6 351260 367481 16222 * DUSP22 0.339494405366902 2 0.0226274169979695 1.18080630753476 10 0.426236971127043 6 4 2 -6.75142799629557 LTS-010 chr6 367482 408012 40531 * IRF4 0.491 1 NA 1.43223468319509 65 0.344616776428766 4 4 0 -5.76441792821201 LTS-010 chr6 408013 29695854 29287842 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, NA NA NA NA NA NA NA NA NA LTS-010 DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, ZSCAN23, NKAPL, TOB2P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZSCAN12, KIAA0319, NUP153) 0.457988098611496 444 0.0446889198991357 1.4060355868309 15229 0.656788410424246 4 2 2 -6.80964922444511 LTS-010 NA NA NA NA LTS-010 chr6 29695855 29760149 64295 * character(0) 0.422 1 NA 1.15384935661758 23 0.243845557938795 3 3 0 -5.7657925323646 LTS-010 chr6 29760150 29910080 149931 * character(0) 0.445482354967715 9 0.0871234755964201 1.20445163264221 93 3.50081054369315 4 2 2 -6.73330555533646 LTS-010 chr6 29910081 29910105 25 * character(0) 0.453 1 NA 0.357 1 NA NA NA NA NA LTS-010 chr6 29910106 29912188 2083 * character(0) 0.41441724328949 26 0.0706764349803983 0.5363681339291 48 0.625882479112153 12 7 5 -6.74636770952163 LTS-010 chr6 29912189 29912333 145 * character(0) 0.448 1 NA 0.97239732439578 3 0.594894108224312 3 3 0 -5.76441394493947 LTS-010 chr6 29912334 29943020 30687 * character(0) 0.436939515359846 17 0.0431023917720419 0.951628521000077 37 0.370048525752247 2 1 1 -6.75938267005063 LTS-010 chr6 29943021 31237255 1294235 * character(0) 0.459181189481492 127 0.0360274652552523 1.39600023721141 3131 0.728777025374438 4 2 2 -6.82895340412082 LTS-010 chr6 31237256 31237833 578 * character(0) 0.38 1 NA 1.11006937524291 3 0.902317756299483 3 3 0 -5.76441015847237 LTS-010 chr6 31237834 31238212 379 * character(0) 0.335 1 NA 10.1150792697646 15 95.5745496827691 20 20 0 -5.76441013836746 LTS-010 chr6 31238213 31238230 18 * character(0) 0.363 1 NA 0.545 1 NA NA NA NA NA LTS-010 chr6 31238231 31324516 86286 * character(0) 0.411107355970864 37 0.0802474775781623 0.729387272078569 95 0.540514529661244 2 1 1 -6.83716875967966 LTS-010 chr6 31324517 31324536 20 * character(0) 0.008 1 NA 0.003 1 NA NA NA NA NA LTS-010 chr6 31324537 31379823 55287 * character(0) 0.322148654315743 24 0.139942819585798 0.848809866757129 52 0.547850819096693 3 2 1 -6.75771986618115 LTS-010 chr6 31379824 31382882 3059 * character(0) 0.443 1 NA 1.03934726365966 15 0.199427919906154 3 3 0 -5.76456717508544 LTS-010 chr6 31382883 31431160 48278 * character(0) 0.416075125452633 4 0.00853912563829965 1.17036724203847 10 0.0873028572779201 5 3 2 -8.55723673394581 LTS-010 chr6 31431161 31962096 530936 * character(0) 0.457192822320162 51 0.0426207350807506 1.40796156944285 2858 0.296476072378498 4 2 2 -6.78550334821527 LTS-010 chr6 31962097 31962104 8 * character(0) NA 0 NA 0.967 1 NA NA NA NA NA LTS-010 chr6 31962105 31979003 16899 * character(0) NA 0 NA 0.678048957644569 99 0.30043218028283 2 NA NA -5.76595700333933 LTS-010 chr6 31979004 31979012 9 * character(0) NA 0 NA 1.345 1 NA NA NA NA NA LTS-010 chr6 31979013 32427927 448915 * character(0) 0.448024779061969 99 0.0664668790536439 1.39530847023122 1590 0.348318019297617 4 2 2 -6.73677832590344 LTS-010 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 0.02 1 NA NA NA NA NA LTS-010 chr6 32485401 32487256 1856 * HLA-DRB5 0.464142228840774 5 0.0236474100061719 0.364804681740606 15 0.233461162264121 2 1 1 -7.12179793210998 LTS-010 chr6 32487257 32489639 2383 * HLA-DRB5 0.33 1 NA 0.462844847466858 6 0.397116439683208 1 1 0 -5.76448288289019 LTS-010 chr6 32489640 32489940 301 * HLA-DRB5 0.265758256106763 7 0.100954964028049 0.719515024869366 19 0.443604329520791 4 3 1 -6.73355614868804 LTS-010 chr6 32489941 32497886 7946 * HLA-DRB5 NA 0 NA 0.833 1 NA NA NA NA NA LTS-010 chr6 32497887 32552128 54242 * HLA-DRB5 0.337187364862701 59 0.0913270690848719 1.06091338322546 112 1.33115707447833 3 2 1 -6.7384645202028 LTS-010 chr6 32552129 32606711 54583 * c(HLA-DQA1, HLA-DRB5) 0.34231108391411 25 0.0624606009150302 1.18790604490873 44 0.275542114130707 3 2 1 -6.73741027727974 LTS-010 chr6 32606712 32609126 2415 * HLA-DQA1 0.425 1 NA 0.983803748966068 5 0.40435195065685 3 3 0 -5.76452378356272 LTS-010 chr6 32609127 32610109 983 * HLA-DQA1 0.444094318578423 9 0.0538093341758142 1.13940798778843 27 0.458880664647645 4 2 2 -6.73327985717682 LTS-010 chr6 32610110 32610495 386 * HLA-DQA1 0.269 1 NA 1.53475333089063 3 0.663403597618624 4 4 0 -5.7644122155256 LTS-010 chr6 32610496 32627714 17219 * HLA-DQA1 0.268206915088805 49 0.0839284650455253 1.42431459603072 75 0.372476173492775 4 3 1 -6.7341754057579 LTS-010 chr6 32627715 32627752 38 * character(0) 0.403 1 NA 1.42079919983179 3 0.516152109363122 4 4 0 -5.76441015142034 LTS-010 chr6 32627753 32628505 753 * character(0) 0.4180647303114 15 0.0307860512632093 0.972296850752961 21 0.324026938915358 19 11 8 -6.74875142105698 LTS-010 chr6 32628506 32628538 33 * character(0) 0.058 1 NA 1.32 1 NA NA NA NA NA LTS-010 chr6 32628539 32629314 776 * character(0) 0.271345379680295 9 0.107785795807137 1.27783341098962 17 0.308337262826047 4 3 1 -6.73548045274766 LTS-010 chr6 32629315 32629716 402 * character(0) 0.434 1 NA 1.15416973851751 5 0.196880166598873 3 3 0 -5.76442352338616 LTS-010 chr6 32629717 32713888 84172 * character(0) 0.435885914529796 27 0.0664593571579364 1.19223794693839 67 0.384223709429001 4 2 2 -6.75601116720017 LTS-010 chr6 32713889 32714175 287 * character(0) 0.367 1 NA 1.53807809731595 5 0.12278762152595 4 4 0 -5.76445841213529 LTS-010 chr6 32714176 32727002 12827 * character(0) 0.331662804671216 15 0.118458431527688 1.66343671971584 49 0.33916766492691 6 4 2 -6.73979363054204 LTS-010 chr6 32727003 32727004 2 * character(0) 0.378 1 NA 0.774 1 NA NA NA NA NA LTS-010 chr6 32727005 32973552 246548 * character(0) 0.441041337222924 38 0.0851267484410291 1.30782925052285 668 0.31322571138553 4 2 2 -6.74834701421458 LTS-010 chr6 32973553 32973628 76 * character(0) NA 0 NA 1.554 1 NA NA NA NA NA LTS-010 chr6 32973629 33048723 75095 * character(0) 0.470564912059629 4 0.0185831464863551 2.0523328193975 133 9.23707549578729 6 3 3 -7.71063340350102 LTS-010 chr6 33048724 33052693 3970 * character(0) NA 0 NA 2.439 1 NA NA NA NA NA LTS-010 chr6 33052694 33054760 2067 * character(0) 0.45 1 NA 4.76480200198975 45 55.1568984247411 14 14 0 -5.76441013473656 LTS-010 chr6 33054761 39284682 6229922 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-010 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, KCNK16, UQCC2, KCNK5, KCNK17, RNF8) 0.448435604340862 155 0.0567351500551508 1.43367340173565 8161 0.4721149415554 4 2 2 -6.73597512887926 LTS-010 NA NA NA NA LTS-010 chr6 39284683 39285587 905 * KCNK16 NA 0 NA 1.749 1 NA NA NA NA NA LTS-010 chr6 39285588 41658758 2373171 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, NCR2) 0.472464908318683 34 0.0268068452428043 1.5331472301149 1482 0.320710105178781 4 2 2 -7.36593822722765 LTS-010 chr6 41658759 42980118 1321360 * c(TOMM6, CNPY3, FRS3, TAF8, PTCRA, UBR2, GLTSCR1L, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, MEA1, C6orf226, ATP6V0CP3, PEX6, PGC, MRPS10, PPP2R5D, TRERF1, PRPH2, C6orf132, TBCC, BYSL, TFEB, CCND3, MED20) 0.454913204191972 51 0.0319074150826246 1.38599865692777 2101 0.504008208332283 4 2 2 -6.79775121752016 LTS-010 chr6 42980119 51613526 8633408 * c(LINC01512, ANKRD66, MIR4647, MIR4642, RCAN2, CRISP3, DNPH1, SLC22A7, CAPN11, KLHDC3, C6orf141, CRISP1, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, ADGRF2, ENPP4, CUL9, CD2AP, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, GLYATL3, CRIP3, MEA1, MEP1A, TMEM151B, PTCHD4, MUT, NFKBIE, MRPL2, CYP39A1, PGK2, PKHD1, CLIC5, POLH, NA NA NA NA NA NA NA NA NA LTS-010 GTPBP2, CENPQ, MRPS18A, TMEM63B, AARS2, XPO5, PTK7, ENPP5, RHAG, MRPL14, DLK2, SRF, MIR586, TFAP2B, CRISP2, VEGFA, PLA2G7, TFAP2D, TTBK1, SUPT3H, RUNX2, RRP36, ABCC10, KLC4, TJAP1, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.455012926293769 134 0.0630290740777974 1.47964148953008 6491 0.417597835976502 4 2 2 -6.76944435826798 LTS-010 NA NA NA NA LTS-010 chr6 51613527 51617958 4432 * PKHD1 NA 0 NA 1.308 1 NA NA NA NA NA LTS-010 chr6 51617959 53516408 1898450 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.460888415639903 46 0.0316794405967299 1.36497123528433 1642 0.281880326930034 4 2 2 -6.92632339637565 LTS-010 chr6 53516409 57059638 3543230 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.427121891787436 40 0.0988031940467825 1.47202500492705 2428 0.288596612363927 4 2 2 -6.76360698986479 LTS-010 chr6 57059639 57372361 312723 * c(RAB23, PRIM2) 0.468129107560993 9 0.0202731349327133 1.28709201092954 56 0.281555179593351 4 2 2 -7.46934701541842 LTS-010 chr6 57372362 57393092 20731 * PRIM2 0.122 1 NA 1.38300927891922 5 0.563687856885351 4 4 0 -5.76447639776725 LTS-010 chr6 57393093 57512678 119586 * PRIM2 0.329910688296445 38 0.118817684910583 1.12129315279514 79 0.358434771690244 3 2 1 -6.74399630811055 LTS-010 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.33578462353121 19 0.205710208931107 4 NA NA -5.83963689041187 LTS-010 chr6 62390154 62442604 52451 * KHDRBS2 0.446 1 NA 1.71304651889316 27 0.351349393071051 5 5 0 -5.76478929463492 LTS-010 chr6 62442605 74019388 11576784 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, NA, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.464352630683839 66 0.039730877882859 1.4559035477399 2706 0.379929574178216 4 2 2 -6.88032446556144 LTS-010 chr6 74019389 74473443 454055 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.454720622336787 4 0.0468365953786851 1.28524759225348 645 0.273854351614528 4 2 2 -6.80718099694951 LTS-010 chr6 74473444 74475664 2221 * CD109 NA 0 NA 1.658 1 NA NA NA NA NA LTS-010 chr6 74475665 83880229 9404565 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, MYO6, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.457561695564504 37 0.0291898620765506 1.46782394393092 3091 0.330217760752928 4 2 2 -6.8634481753684 LTS-010 chr6 83880230 83881654 1425 * c(DOPEY1, PGM3) NA 0 NA 1.196 1 NA NA NA NA NA LTS-010 chr6 83881655 84025196 143542 * c(RWDD2A, ME1, PGM3) 0.294 1 NA 1.14242429841293 164 0.19341699065988 3 3 0 -5.7674279401145 LTS-010 chr6 84025197 84055880 30684 * ME1 NA 0 NA 1.568 1 NA NA NA NA NA LTS-010 chr6 84055881 86227741 2171861 * c(MRAP2, RIPPLY2, PRSS35, CEP162, ME1, NT5E, CYB5R4, SNX14, TBX18, SNAP91) 0.475514480189966 5 0.0192041662146525 1.47267993394873 818 0.32701764946881 4 2 2 -7.97995948649912 LTS-010 chr6 86227742 86235834 8093 * SNX14 NA 0 NA 1.034 1 NA NA NA NA NA LTS-010 chr6 86235835 91296539 5060705 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.469292431122831 65 0.0269425760432471 1.37155314509979 3461 0.602867507892025 4 2 2 -7.21317991172466 LTS-010 chr6 91296540 105177097 13880558 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.452594426364067 60 0.0620078794883688 1.4690965650837 2433 0.33646954781425 4 2 2 -6.76967362049222 LTS-010 chr6 105177098 114378722 9201625 * c(LIN28B-AS1, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, SLC16A10, BVES-AS1, AIM1, CCDC162P, AK9, HS3ST5, FOXO3, CDK19, LACE1, FYN, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, OSTM1, HDAC2, LINC00222, LIN28B, LAMA4, MARCKS, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, REV3L, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, NR2E1, NA NA NA NA NA NA NA NA NA LTS-010 METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.454219581455621 94 0.0320261078723212 1.37914700140658 5886 0.369988925802793 4 2 2 -6.86164658305777 LTS-010 NA NA NA NA LTS-010 chr6 114378723 114378970 248 * HS3ST5 0.49 1 NA 1.59171693228098 5 0.11387054052739 4 4 0 -5.7645230777132 LTS-010 chr6 114378971 116262857 1883887 * c(HS3ST5, FRK) 0.393 1 NA 1.66265588447539 19 0.295560969259657 5 5 0 -5.82438670405369 LTS-010 chr6 116262858 119653186 3390329 * c(TRAPPC3L, LOC100287632, NUS1, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, GPRC6A, RFX6, SLC35F1, TSPYL4, BRD7P3, FRK, VGLL2, FAM26E, MCM9, ASF1A, DCBLD1, DSE, RSPH4A, KPNA5, CEP85L, MAN1A1, FAM26F, RWDD1, PLN, GOPC, ROS1, MIR548B, TSPYL1, TPI1P3, FAM184A) 0.407488568723325 99 0.0510000990294146 1.70582201980653 2913 0.386251899278949 5 3 2 -6.76352398171029 LTS-010 chr6 119653187 119670436 17250 * MAN1A1 NA 0 NA 1.79501068473513 18 0.303267995548793 5 NA NA -5.76441764689662 LTS-010 chr6 119670437 119670457 21 * MAN1A1 0.414 1 NA 0.168 1 NA NA NA NA NA LTS-010 chr6 119670458 127768717 8098260 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, LOC285762, HSF2, CENPW, SOGA3, MAN1A1, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.354115699462643 58 0.0568015511491206 1.12981200384655 2218 0.283054619631566 3 2 1 -6.78367790319672 LTS-010 chr6 127768718 150290029 22521312 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, RAET1E, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, NA NA NA NA NA NA NA NA NA LTS-010 MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, RAET1G, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, ULBP2, ULBP1, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.340066311276249 248 0.0557889752171433 1.07385282509919 10908 0.274320097292344 3 2 1 -6.85568264435192 LTS-010 NA NA NA NA LTS-010 chr6 150290030 150290134 105 * ULBP1 NA 0 NA 1.367 1 NA NA NA NA NA LTS-010 chr6 150290135 150726512 436378 * c(RAET1L, IYD, RAET1K, ULBP3, ULBP1, PPP1R14C) 0.335490718713964 10 0.0342675745664421 1.26813759662596 321 0.344109275743401 3 2 1 -6.8308972018207 LTS-010 chr6 150726513 150726655 143 * character(0) NA 0 NA 0.888 1 NA NA NA NA NA LTS-010 chr6 150726656 151941042 1214387 * c(MTHFD1L, RMND1, PLEKHG1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.350893310323631 38 0.0486048089572375 1.06013648248727 838 0.501223435510095 3 2 1 -6.74375644908944 LTS-010 chr6 151941043 153308931 1367889 * c(ESR1, SYNE1, FBXO5, MTRF1L, VIP, CCDC170, MYCT1) 0.345790129505639 38 0.0451339794657884 1.1547050358212 1385 0.327438130846024 3 2 1 -6.74982720758452 LTS-010 chr6 153308932 153309271 340 * MTRF1L NA 0 NA 0.997 1 NA NA NA NA NA LTS-010 chr6 153309272 153311018 1747 * MTRF1L NA 0 NA 0.70076286286496 40 0.268468739525786 2 NA NA -5.76451370410781 LTS-010 chr6 153311019 160234703 6923685 * c(LOC100129518, C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, MRPL18, ACAT2, GTF2H5, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.337941579003328 109 0.0468054511231544 1.05486460788169 3562 0.800002644367272 3 2 1 -6.7624343376792 LTS-010 chr6 160234704 160236928 2225 * PNLDC1 NA 0 NA 0.928 1 NA NA NA NA NA LTS-010 chr6 160236929 167590506 7353578 * c(AIRN, LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, PNLDC1, C6orf118, GPR31, PACRG-AS1, PRR18, IGF2R, DKFZp451B082, TCP10L2, LPA, MAS1, MAP3K4, LINC00602, PARK2, MPC1, PLG, AGPAT4, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, T, LOC729603, AGPAT4-IT1, LPAL2, RNASET2, LINC00473, QKI) 0.336513405122478 72 0.0474082921637575 1.13857831735711 2966 0.316406270773962 3 2 1 -6.80343603516427 LTS-010 chr6 167590507 167590541 35 * TCP10L2 0.245 1 NA 0.314 1 NA NA NA NA NA LTS-010 chr6 167590542 167592985 2444 * TCP10L2 0.347987126633287 5 0.135614158552859 0.596284028967066 39 0.525904591799799 3 2 1 -6.73517422096527 LTS-010 chr6 167592986 167592995 10 * TCP10L2 NA 0 NA 1.693 1 NA NA NA NA NA LTS-010 chr6 167592996 169615965 2022970 * c(HGC6.3, DACT2, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.293691060741687 35 0.0988987428865393 1.20208270683633 1174 0.738358985990572 4 3 1 -6.85699866888954 LTS-010 chr6 169615966 170190200 574235 * c(WDR27, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, THBS2, LINC00574) 0.359756913426343 16 0.0540119971240958 1.07264846914039 566 0.30114233238264 3 2 1 -6.7752056134491 LTS-010 chr6 170190201 170893599 703399 * c(MIR4644, LOC154449, DLL1, LINC00242, PDCD2, PSMB1, TBP, LINC00574, FAM120B) NA 0 NA 1.08111484639633 403 1.09419584674834 3 NA NA -5.76453665010327 LTS-010 chr7 193047 195594 2548 * FAM20C 0.37 1 NA 1.02450940334042 19 0.261012569435858 3 3 0 -5.76452876709994 LTS-010 chr7 195595 5692219 5496625 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, FSCN1, MIR589, MAFK, MICALL2, FBXL18, NA NA NA NA NA NA NA NA NA LTS-010 TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.349200493783112 160 0.0601328112775244 1.10013377763267 5232 0.274376478310149 3 2 1 -6.73497771518413 LTS-010 NA NA NA NA LTS-010 chr7 5692220 5760860 68641 * c(RNF216-IT1, RNF216) 0.277 1 NA 1.00874502304381 27 0.248083164302329 3 3 0 -5.76961485661394 LTS-010 chr7 5760861 5926027 165167 * c(ZNF815P, RNF216, OCM) 0.283247642427836 3 0.0725695069111906 1.03282214448932 106 0.345120123103636 4 3 1 -6.86350548645578 LTS-010 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.634 1 NA NA NA NA NA LTS-010 chr7 5937950 6017391 79442 * c(RSPH10B, CCZ1, PMS2) 0.354251387684738 9 0.0283671366980251 0.731773454029233 146 0.498512958523424 3 2 1 -6.81700053645682 LTS-010 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.863 1 NA NA NA NA NA LTS-010 chr7 6018171 6821140 802970 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.321110819515591 23 0.0666602203734517 1.06812246664502 1314 0.253314868745234 3 2 1 -6.82185382336584 LTS-010 chr7 6821141 6825552 4412 * RSPH10B2 NA 0 NA 1.497 1 NA NA NA NA NA LTS-010 chr7 6825553 6863802 38250 * c(CCZ1B, RSPH10B2) NA 0 NA 1.93332066943702 71 0.905834197166644 5 NA NA -5.76460002415904 LTS-010 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 1.195 1 NA NA NA NA NA LTS-010 chr7 6864270 30876378 24012109 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, NA NA NA NA NA NA NA NA NA LTS-010 DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.330890330831859 246 0.0613153358994246 1.10084108756041 9871 0.298981061745899 3 2 1 -6.76871189368702 LTS-010 NA NA NA NA LTS-010 chr7 30876379 31692957 816579 * c(INMT-FAM188B, ADCYAP1R1, CCDC129, GHRHR, AQP1, NEUROD6, FAM188B) 0.326128773964632 15 0.136803021409129 1.32844972447133 616 0.322916398061884 4 3 1 -6.88314580098271 LTS-010 chr7 31692958 31693077 120 * CCDC129 NA 0 NA 1.027 1 NA NA NA NA NA LTS-010 chr7 31693078 34987334 3294257 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.337881037453295 46 0.0772016025715369 1.16021443972262 1459 0.720834275971395 3 2 1 -6.749572892343 LTS-010 chr7 34987335 34989355 2021 * DPY19L1 NA 0 NA 1.059 1 NA NA NA NA NA LTS-010 chr7 34989356 38309169 3319814 * c(MIR1200, AOAH-IT1, DPY19L1, KIAA0895, AOAH, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, TBX20, HERPUD2, SFRP4, EEPD1, STARD3NL, ELMO1, SEPT7) 0.362573765601384 42 0.0640166935255323 1.04630269293314 1395 0.285039152133028 3 2 1 -6.83840433245441 LTS-010 chr7 38309170 38313075 3906 * TARP NA 0 NA 1.653 1 NA NA NA NA NA LTS-010 chr7 38313076 38398511 85436 * c(TRG-AS1, TARP) 0.166482460896255 3 0.213044596270358 1.57170071818909 73 0.847699107145754 6 5 1 -6.74177231444799 LTS-010 chr7 38398512 38402481 3970 * TRG-AS1 NA 0 NA 1.211 1 NA NA NA NA NA LTS-010 chr7 38402482 44868041 6465560 * c(MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, YKT6, POU6F2, MPLKIP, AEBP1, TMED4, HECW1, NUDCD3, LINC00957, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, DBNL, NPC1L1, FAM183BP, LINC00265, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, YAE1D1, MYL7, RALA, BLVRA, LOC646999, MRPS24, MRPL32, C7orf25, SUGCT, CAMK2B, ZMIZ2, POLR2J4, CDK13, STK17A, NA NA NA NA NA NA NA NA NA LTS-010 H2AFV) 0.339124929324142 102 0.0448600457437921 1.1069551508943 3842 0.624276467855663 3 2 1 -6.74674993541847 LTS-010 NA NA NA NA LTS-010 chr7 44868042 44868067 26 * H2AFV 0.407 1 NA 0.476 1 NA NA NA NA NA LTS-010 chr7 44868068 45002536 134469 * c(PURB, MYO1G, H2AFV) 0.38030489496109 8 0.0523033732864608 0.931188535744185 258 0.199398627443391 3 2 1 -7.03943450205366 LTS-010 chr7 45002537 57532512 12529976 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, EGFR-AS1, RAMP3, IKZF1, ADCY1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, NACAD, COBL, SEC61G, SUN3, SUMF2, GBAS, POM121L12, VSTM2A-OT1, SNHG15, GRB10, HPVC1, HUS1, SEPT14, IGFBP1, IGFBP3, ZNF713, FKBP9P1, VWC2, NUPR2, C7orf65, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, FIGNL1, MYO1G, SEPT7P2, GUSBP10, TNS3, LOC650226, NA NA NA NA NA NA NA NA NA LTS-010 SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf69, VOPP1, CCM2, LINC00525, CCT6A, ZNF479, TBRG4) 0.344431437356178 116 0.0501018842020906 1.1225662170648 4802 0.255475125602127 3 2 1 -6.7734437881353 LTS-010 NA NA NA NA LTS-010 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.49659085549986 13 0.503629086144016 4 NA NA -5.76441256285205 LTS-010 chr7 62758725 63029065 270341 * ZNF733P 0.25 1 NA 0.771043747519266 10 0.317165151511532 2 2 0 -5.76461100225745 LTS-010 chr7 63029066 64639874 1610809 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.344411643383122 24 0.0566189910271062 1.00300793345014 607 0.275288140164963 3 2 1 -6.84389455516947 LTS-010 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.737 1 NA NA NA NA NA LTS-010 chr7 64643340 65160072 516733 * c(ZNF92, LOC441242, INTS4P2) 0.370298917585545 4 0.0374020944155092 0.648591022907743 98 0.109752392360558 2 1 1 -9.09239786910305 LTS-010 chr7 65160073 72413486 7253414 * c(MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, VKORC1L1, KCTD7, SBDSP1, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, TYW1B, SPDYE7P, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, CALN1, TPST1, POM121) 0.318260202390613 56 0.0682627087259025 1.10957405795636 1578 0.36138778739148 3 2 1 -6.83120925452013 LTS-010 chr7 72413487 72413581 95 * POM121 0.474 1 NA 0.26 1 NA NA NA NA NA LTS-010 chr7 72413582 72712179 298598 * c(NSUN5P2, GTF2IRD2P1, STAG3L3, LOC541473, NCF1B, FKBP6, POM121) 0.320375432359549 2 0.17819090885901 0.4706395303127 167 0.627181412342688 3 2 1 -7.0579405287816 LTS-010 chr7 72712180 72712249 70 * FKBP6 NA 0 NA 0.733 1 NA NA NA NA NA LTS-010 chr7 72712250 80447686 7735437 * c(POM121C, PMS2P9, LOC100133091, MIR548M, MIR4284, APTR, MAGI2-AS3, MIR4651, MIR548AU, MAGI2-AS2, CCL26, SEMA3C, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, TBL2, GNAI1, GTF2I, GTF2IP1, HIP1, HSPB1, GNAT3, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, MDH2, DTX2P1-UPK3BP1-PMS2P11, STAG3L2, SPDYE5, MLXIPL, STYXL1, PMS2P5, PMS2P3, NA NA NA NA NA NA NA NA NA LTS-010 GSAP, STAG3L1, POR, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, TMEM120A, GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, CD36, GTF2IRD1, MAGI2) 0.315536959536919 99 0.0607716679857239 1.08020617716398 4565 0.263666769974313 3 2 1 -6.90485332030526 LTS-010 NA NA NA NA LTS-010 chr7 80447687 86507821 6060135 * c(SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GRM3, HGF, CACNA2D1, SEMA3E) 0.35705607253025 39 0.058389589222349 1.20955881317209 1640 0.28628830529129 3 2 1 -7.11840221948875 LTS-010 chr7 86507822 100320809 13812988 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-010 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.341131632709376 187 0.0555301758101615 1.09270330713908 12059 0.244321491788519 3 2 1 -6.74689148101054 LTS-010 NA NA NA NA LTS-010 chr7 100320810 100320892 83 * EPO NA 0 NA 0.991 1 NA NA NA NA NA LTS-010 chr7 100320893 100344253 23361 * c(EPO, ZAN) NA 0 NA 0.293346905413571 40 0.472819247731774 1 NA NA -5.77281697054106 LTS-010 chr7 100344254 100549499 205246 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.297504590092156 4 0.0100124921972504 1.15489902383251 696 4.24177025724965 17 12 5 -6.75219106031659 LTS-010 chr7 100549500 100549505 6 * character(0) 0.221 1 NA 1.7 1 NA NA NA NA NA LTS-010 chr7 100549506 100549593 88 * character(0) 0.271514704750231 5 0.0355485583392632 1.57810835182426 5 0.105115650594952 15 11 4 -6.74021705554146 LTS-010 chr7 100549594 100549650 57 * character(0) 0.386 1 NA 1.45391117778386 3 0.179544794782064 4 4 0 -5.76441021632371 LTS-010 chr7 100549651 100550184 534 * character(0) 0.440061724501979 17 0.0186449015267224 1.5278991870798 27 0.133389165660744 11 6 5 -6.74998251432138 LTS-010 chr7 100550185 100550203 19 * character(0) 0.161 1 NA 1.44994750426538 3 0.117729916900223 4 4 0 -5.7644101638555 LTS-010 chr7 100550204 100550726 523 * character(0) 0.257002962967597 14 0.0793690780433448 1.51541057911714 22 0.138726622382208 4 3 1 -6.7384988853192 LTS-010 chr7 100550727 100550744 18 * character(0) 0.11 1 NA 0.658 1 NA NA NA NA NA LTS-010 chr7 100550745 100551035 291 * character(0) 0.269492076867989 6 0.0782519435328393 0.670648544906055 38 0.293256333917353 4 3 1 -6.73660023087755 LTS-010 chr7 100551036 100551058 23 * character(0) NA 0 NA 1.141 1 NA NA NA NA NA LTS-010 chr7 100551059 100551566 508 * character(0) 0.258964793720573 28 0.092828246419575 1.37829406183245 38 0.244145503802603 4 3 1 -6.73521539440672 LTS-010 chr7 100551567 100551578 12 * character(0) 0.381 1 NA 1.268 1 NA NA NA NA NA LTS-010 chr7 100551579 100606323 54745 * character(0) 0.35528766286016 48 0.088035290211909 1.49098208548274 93 0.242226431242587 3 2 1 -6.7906928116727 LTS-010 chr7 100606324 100606721 398 * character(0) NA 0 NA 0.927 1 NA NA NA NA NA LTS-010 chr7 100606722 100681762 75041 * c(MUC12, MUC17) 0.36142473585458 33 0.0816366441413822 1.19620813223172 309 0.363970875219182 3 2 1 -6.75705183366543 LTS-010 chr7 100681763 100692680 10918 * MUC17 0.408 1 NA 1.22335576201228 95 0.218577434189447 3 3 0 -5.76591153293592 LTS-010 chr7 100692681 134221570 33528890 * c(RPL19P12, LOC100130705, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SMKR1, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4653, MIR4467, LOC100630923, MIR5090, RNA5SP244, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, TSGA13, AP1S1, CPA1, CPA2, COL26A1, KLF14, SSMEM1, LRGUK, ASZ1, MUC17, ASB15, CUX1, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, NA NA NA NA NA NA NA NA NA LTS-010 DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLDN15, POLR2J2, POT1, HYALP1, TES, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, MOGAT3, FAM71F2, IFRD1, DPY19L2P2, IMPDH1, IRF5, KCND2, NAT16, SLC26A5, LHFPL3, KCP, LINC-PINT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 RNF148, ARF5, FEZF1, LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, EIF3IP1, LMOD2, MIR335, NDUFA5, NRCAM, NRF1, ORC5, SERPINE1, PNPLA8, PAX4, TAS2R16, FIS1, CPA4, WNT16, ZC3HC1, LSM8, SLC26A4, PIK3CG, PODXL, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, CHCHD3, PPP1R3A, RBM28, PRKAR2B, METTL2B, KMT2E, BCAP29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ANKRD7, RELN, PSMC2, AKR1B10, STRIP2, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, CCDC136, IFT22, SLC13A1, SMO, SPAM1, SRPK2, SYPL1, MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, UBE2H, VGF, WNT2, GCC1, PRKRIP1, ST7, CBLL1, CPED1, ORAI2, CALU, TRIM56, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, WASL, PLOD3, PLXNA4, ATP6V1F, MYL10, ST7-AS1, ST7-AS2, ST7-OT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CADPS2, CPA5, FOXP2, PMPCB, CEP41, DOCK4) 0.336562652383949 357 0.0622889041383924 1.0958130397507 17302 0.285425088167186 3 2 1 -6.75367579754524 LTS-010 NA NA NA NA LTS-010 chr7 134221571 134221749 179 * AKR1B10 NA 0 NA 0.365 1 NA NA NA NA NA LTS-010 chr7 134221750 134260340 38591 * c(AKR1B15, AKR1B10) NA 0 NA 0.405157295308585 51 0.133700965723117 1 NA NA -5.76686247932147 LTS-010 chr7 134260341 134260519 179 * AKR1B15 NA 0 NA 0.795 1 NA NA NA NA NA LTS-010 chr7 134260520 141357296 7096777 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, ATP6V0A4, LUC7L2, MRPS33, TMEM140, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, TBXAS1, LUZP6, C7orf49, TTC26, NA NA NA NA NA NA NA NA NA LTS-010 CALD1, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.356329620290775 97 0.0683551752453161 1.09102820925512 5134 0.26867180934143 3 2 1 -6.75274653683809 LTS-010 NA NA NA NA LTS-010 chr7 141357297 141875671 518375 * c(OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, KIAA1147, TAS2R38, SSBP1, MGAM, MGAM2) 0.368664769867331 16 0.0710192168829442 1.15579686434467 1055 0.227161891352545 3 2 1 -6.80802465204534 LTS-010 chr7 141875672 141901322 25651 * character(0) 0.301 1 NA 1.19514082661614 63 0.195676997767232 3 3 0 -5.76706735720849 LTS-010 chr7 141901323 142498897 597575 * c(MOXD2P, MTRNR2L6, PRSS58, PRSS3P2, PRSS1, NA) 0.287786513316073 113 0.0985844228687479 1.23707192387043 608 2.37202803235741 7 5 2 -6.76464513642079 LTS-010 chr7 142498898 142499762 865 * character(0) 0.326 1 NA 1.06310564384127 9 0.206220216704808 3 3 0 -5.76442570833214 LTS-010 chr7 142499763 142510309 10547 * character(0) 0.113004774876387 9 0.0727027815454433 1.26194165637377 21 0.200127828197499 9 8 1 -6.86952583348939 LTS-010 chr7 142510310 142510350 41 * character(0) 0.321 1 NA 0.959074015773734 3 0.232831126212397 3 3 0 -5.76441865459935 LTS-010 chr7 142510351 143175399 665049 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.331792946760324 22 0.0524673470915246 1.12317407192115 1274 0.240864938270808 3 2 1 -6.77840566270116 LTS-010 chr7 143175400 143305591 130192 * c(TAS2R41, EPHA1-AS1, CTAGE15) NA 0 NA 0.89005639275694 40 0.425602251265253 2 NA NA -5.77471316582412 LTS-010 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.0776384720937158 39 0.136742204528541 0 NA NA -5.76739382300839 LTS-010 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.44 1 NA NA NA NA NA LTS-010 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.350403469442622 15 0.0304440157541362 1.23688359847397 288 0.575682806211626 3 2 1 -6.75698151404608 LTS-010 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.331 1 NA NA NA NA NA LTS-010 chr7 143883365 143982536 99172 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.416 1 NA 0.681218502145095 91 0.442285062690203 2 2 0 -5.76827117848318 LTS-010 chr7 143982537 143982618 82 * ARHGEF34P 0.241 1 NA 0.977 1 NA NA NA NA NA LTS-010 chr7 143982619 156469819 12487201 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, NA NA NA NA NA NA NA NA NA LTS-010 CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, LINC00244, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, ARHGEF34P, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.348742975676944 211 0.0583594086867006 1.10141687795816 8023 0.710054976123533 3 2 1 -6.73449312087848 LTS-010 NA NA NA NA LTS-010 chr7 156469820 156473482 3663 * RNF32 NA 0 NA 0.682 1 NA NA NA NA NA LTS-010 chr7 156473483 158822689 2349207 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.332728122744719 59 0.0493953799981999 1.053138080272 1542 1.00405977258415 3 2 1 -6.77800361408552 LTS-010 chr7 158822690 159025951 203262 * c(LINC00689, VIPR2) NA 0 NA 1.05781562079528 101 0.190179217717092 3 NA NA -5.76999922093935 LTS-010 chr8 182757 280241 97485 * ZNF596 0.386 1 NA 1.06332819352083 87 0.21036317992603 3 3 0 -5.76607858285051 LTS-010 chr8 280242 7673126 7392885 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, CLN8, DEFB107A, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, FAM90A7P, FAM90A10P, DEFA8P, DEFA9P, DEFA10P, DEFB107B, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.339147990960908 93 0.0756926887021108 1.15769326871796 2288 0.475395812036967 3 2 1 -6.78544074608726 LTS-010 chr8 7673127 7698739 25613 * DEFB107B NA 0 NA 1.36860380506618 27 0.412186439573964 4 NA NA -5.7646510854968 LTS-010 chr8 7698740 7717830 19091 * SPAG11A NA 0 NA 0.479 1 NA NA NA NA NA LTS-010 chr8 7717831 7717915 85 * SPAG11A 0.006 1 NA 0.007 1 NA NA NA NA NA LTS-010 chr8 7717916 8561537 843622 * c(FAM66E, ZNF705B, MIR548I3, CLDN23, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3, SPAG11A) 0.12989763170232 19 0.11912615554811 0.733069538700949 187 0.299668245925404 2 2 0 -6.96993483253928 LTS-010 chr8 8561538 8561552 15 * CLDN23 0.044 1 NA 0.047 1 NA NA NA NA NA LTS-010 chr8 8561553 30211020 21649468 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, MIR548O2, MIR4660, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, DCTN6, PNMA2, ADAM28, LZTS1, CHRNA2, CLU, CLDN23, VPS37A, NKX2-6, SGCZ, ADRA1A, CTSB, LOC157273, PEBP4, CDCA2, ESCO2, FBXO16, LINC00599, TDH, C8orf48, DPYSL2, DUSP4, EGR3, R3HCC1, PRSS55, C8orf74, LGI3, NA NA NA NA NA NA NA NA NA LTS-010 DMTN, EPHX2, EXTL3, PTK2B, FDFT1, FGL1, XPO7, TRIM35, RHOBTB2, KIF13B, PSD3, LEPROTL1, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, GATA4, FGF20, GFRA2, ADAMDEC1, GNRH1, XKR6, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC389641, NUGGC, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SCARA3, PDGFRL, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, PINX1, PIWIL2, ELP3, INTS10, PPP2R2A, CCDC25, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, LINC00589, MBOAT4, SH2D4A, BLK, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STC1, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, HMBOX1, PPP1R3B, FZD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 NUDT18, TUSC3, DOCK5, BIN3-IT1, REEP4, STMN4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, CHMP7, MFHAS1, RP1L1, ENTPD4, PHYHIP) 0.0581275528835624 432 0.0440133565561719 0.763227418906721 14257 0.30019233273658 2 2 0 -6.73616927343103 LTS-010 NA NA NA NA LTS-010 chr8 30211021 30335430 124410 * c(RBPMS-AS1, RBPMS) NA 0 NA 0.800359792922902 25 0.158182468476546 2 NA NA -5.77141277416715 LTS-010 chr8 30335431 30336820 1390 * RBPMS NA 0 NA 1.287 1 NA NA NA NA NA LTS-010 chr8 30336821 30416484 79664 * RBPMS 0.393 1 NA 1.11065654333659 49 0.205838324459578 3 3 0 -5.76448257771489 LTS-010 chr8 30416485 39313093 8896609 * c(SMIM18, NRG1-IT3, RBPMS, ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, GSR, GTF2E2, PURG, NRG1, C8orf86, WHSC1L1, PPP2CB, BRF2, TEX15, PLEKHA2, STAR, TACC1, LOC728024, WRN, DUSP26, RNF122, UBXN8, ZNF703, TTI2, RAB11FIP1, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ASH2L, BAG4) 0.358693995787653 70 0.0551891177348951 1.08070501873697 4424 0.246237605042371 3 2 1 -6.79798759223225 LTS-010 chr8 39313094 39323299 10206 * ADAM3A NA 0 NA 1.804 1 NA NA NA NA NA LTS-010 chr8 39323300 39349526 26227 * ADAM3A NA 0 NA 2.0163296402094 45 0.402002258901136 6 NA NA -5.76465355585875 LTS-010 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.126 1 NA NA NA NA NA LTS-010 chr8 39442068 43056513 3614446 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.335431379241716 52 0.0466949722925898 1.11435791061371 2876 0.288702652924506 3 2 1 -6.76616529811734 LTS-010 chr8 43056514 43212050 155537 * c(HGSNAT, POTEA) NA 0 NA 1.13855621158646 75 0.274048129527091 3 NA NA -5.76574855598684 LTS-010 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.448 1 NA 1.21077045611973 49 0.202281212116969 3 3 0 -5.8097554539122 LTS-010 chr8 48102988 61193588 13090601 * c(SBF1P1, LOC100287846, LINC00968, LINC01606, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CYP7A1, SDR16C5, SPIDR, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, PRKDC, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, UBE2V2, CA8, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.326729705781357 105 0.0695194810233667 1.08795217740997 4456 0.251613204081544 3 2 1 -6.79789160824363 LTS-010 chr8 61193589 61193809 221 * CA8 0.453 1 NA 0.870139102349833 5 0.378598468037048 2 2 0 -5.76442619736817 LTS-010 chr8 61193810 61536220 342411 * c(RAB2A, CA8) 0.44798013223249 2 0.00848528137423858 1.08115692970111 127 0.19833880851873 4 2 2 -7.2204642921461 LTS-010 chr8 61536221 61653757 117537 * CHD7 NA 0 NA 0.698 1 NA NA NA NA NA LTS-010 chr8 61653758 100883697 39229940 * c(MIR875, C8orf88, STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, MIR378D2, MIR4661, MIR4470, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, YTHDF3-AS1, CDH17, RIDA, CPQ, NCOA2, ARFGEF1, POP1, COPS5, WWP1, STMN2, SLC26A7, OSR2, C8orf34, FAM92A1, NA NA NA NA NA NA NA NA NA LTS-010 NDUFAF6, ADHFE1, DCAF4L2, RALYL, CRH, RDH10, C8orf37, VPS13B, SLC7A13, MCMDC2, CLVS1, SBSPON, DECR1, CNBD1, TMEM64, E2F5, ERICH5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, RAD54B, KIAA1429, PTTG3P, GEM, SNORA72, STAU2, BHLHE22, TRIQK, DPY19L4, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, LOC401463, C8orf59, MIR124-2, MATN2, MMP16, MIR2052HG, FLJ46284, ASPH, MYBL1, NBN, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, PDE7A, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, ARMC1, UBE2W, LINC00251, LAPTM4B, RBM12B-AS1, TMEM55A, CHD7, INTS8, PKIA, PAG1, C8orf44, JPH1, CPA6, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, SNHG6, SNORD87, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 NECAB1, LINC00535, UG0898H09, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, TTPA, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, TRIM55, LRRCC1, TSPYL5, DNAJC5B, PSKH2, RUNX1T1, RIPK2, GGH, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, CYP7B1, TP53INP1, MTFR1, PTDSS1) 0.445331350199577 216 0.0523688098782282 0.769048925524395 15354 0.202970730849283 2 1 1 -6.77477764988525 LTS-010 NA NA NA NA LTS-010 chr8 100883698 105264306 4380609 * c(MIR3151, BAALC-AS1, MIR4471, MIR5680, CTHRC1, COX6C, BAALC-AS2, ANKRD46, VPS13B, SNX31, DCAF13, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, BAALC, GRHL2, SLC25A32, FZD6, NACAP1, NCALD, RIMS2) 0.435186709261946 41 0.0859784785890504 0.722956603651754 2595 1.56780729238274 2 1 1 -6.74350978344402 LTS-010 chr8 105264307 117656255 12391949 * c(MIR2053, LINC00536, CSMD3, ABRA, TMEM74, DPYS, ZFPM2, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, OXR1, SYBU, ENY2, TRHR, TRPS1, DCSTAMP, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.408250471436787 35 0.0920456317232259 0.813020470379647 2761 0.225519901771645 2 1 1 -7.37469973084386 LTS-010 chr8 117656256 135612603 17956348 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MIR3610, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, COLEC10, RNF139, ZHX1, ADCY8, MAL2, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, SLC30A8, EXT1, ZHX2, EFR3A, LRRC6, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, SAMD12, FER1L6-AS1, AARD, MYC, NDUFB9, NOV, TNFRSF11B, NA NA NA NA NA NA NA NA NA LTS-010 ASAP1, PHF20L1, FAM49B, ENPP2, POU5F1B, TRMT12, WDYHV1, SAMD12-AS1, GSDMC, ZFAT, PVT1, RAD21, ZFAT-AS1, HAS2-AS1, RAD21-AS1, DEPTOR, ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TAF2, TG, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, UTP23, C8orf76, FAM83A, EIF3H, WISP1, MED30, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.455393743705718 172 0.0368017258707222 0.749296048516942 6962 0.365588819349713 2 1 1 -6.80702457622442 LTS-010 NA NA NA NA LTS-010 chr8 135612604 135612702 99 * c(ZFAT, ZFAT-AS1) NA 0 NA 0.766 1 NA NA NA NA NA LTS-010 chr8 135612703 141407906 5795204 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, TRAPPC9) 0.444525788318904 47 0.0445911947933556 0.840917484718763 973 0.19067709022715 2 1 1 -7.53303712685961 LTS-010 chr8 141407907 141415668 7762 * TRAPPC9 NA 0 NA 0.698 1 NA NA NA NA NA LTS-010 chr8 141415669 142185738 770070 * c(DENND3, AGO2, CHRAC1, PTK2, TRAPPC9) 0.452568238024505 9 0.0288954052479706 0.716045441802475 628 0.168401772098348 2 1 1 -6.84002700568886 LTS-010 chr8 142185739 142186637 899 * DENND3 NA 0 NA 1.149 1 NA NA NA NA NA LTS-010 chr8 142186638 143998662 1812025 * c(LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, DENND3, ARC, GML, GPR20, MROH5, THEM6, LY6K, SLURP1, SLC45A4, ADGRB1, LINC00051, LYNX1, LINC01300, PSCA, LY6D, JRK) 0.458658708474303 99 0.0433993574368653 0.795974782891253 1569 0.264550115437136 2 1 1 -6.82238694588283 LTS-010 chr8 143998663 144103404 104742 * c(CDC42P3, LOC100133669, CYP11B2, LY6E) 0.477 1 NA 0.796544202764758 49 0.166258775534336 2 2 0 -5.76874848953243 LTS-010 chr8 144103405 145578296 1474892 * c(MIR937, FAM83H-AS1, CCDC166, MIR4664, RHPN1, TOP1MT, CYC1, EEF1D, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, OPLAH, GLI4, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GRINA, HSF1, GPIHBP1, NRBP2, WDR97, TMEM249, SPATC1, MAFA, LY6E, LY6H, HGH1, PLEC, EXOSC4, MROH6, SCX, PYCRL, MIR661, TSTA3, MROH1, RHPN1-AS1, GSDMD, ZNF696, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, DGAT1, GPAA1, NAPRT, ZNF623) 0.462290881210424 50 0.0601267402904829 0.771734225966054 3546 0.170307487526881 2 1 1 -6.78795836270415 LTS-010 chr8 145578297 145579936 1640 * c(FBXL6, TMEM249) 0.228 1 NA 0.694101052627091 17 0.168895873769819 2 2 0 -5.76471451276389 LTS-010 chr8 145579937 145618862 38926 * c(ADCK5, FBXL6, CPSF1, SLC52A2) 0.350983892945965 9 0.0808749034002514 0.739685053456235 163 0.156390866123608 3 2 1 -6.88334431912589 LTS-010 chr8 145618863 145620296 1434 * c(MIR939, CPSF1) 0.5 1 NA 0.741308899647371 33 0.120523864416718 2 2 0 -5.76445709260245 LTS-010 chr8 145620297 146280802 660506 * c(MIR1234, MFSD3, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, CPSF1, ZNF517, C8orf82, LRRC24, TONSL, CYHR1, VPS28, SLC39A4, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, ARHGAP39, ZNF34, PPP1R16A, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.461369339680192 53 0.0446905340272418 0.766509728062931 2151 0.159738848075905 2 1 1 -6.81507459426955 LTS-010 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.720767330950401 3 0.179555933717974 2 NA NA -5.76441614451762 LTS-010 chr9 14732 14816 85 * WASH1 0.444 1 NA 0.403 1 NA NA NA NA NA LTS-010 chr9 14817 8317999 8303183 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.259969109072981 83 0.0543891788860623 1.40485620389227 3987 0.344057774316907 4 3 1 -6.76447221299843 LTS-010 chr9 8318000 8319769 1770 * PTPRD NA 0 NA 1.572 1 NA NA NA NA NA LTS-010 chr9 8319770 14617758 6297989 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.28817070328472 15 0.0635938002369054 1.55151262570621 938 0.469956446166285 4 3 1 -6.90647668735782 LTS-010 chr9 14617759 32987777 18370019 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, TUSC1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, LINC01242, NA NA NA NA NA NA NA NA NA LTS-010 TMEM215, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, ACO1, CDKN2A-AS1, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, CER1, PLAA) 0.260849729285973 124 0.0509859484764223 1.43604857124949 5611 0.327464251136166 4 3 1 -6.73746374415665 LTS-010 NA NA NA NA LTS-010 chr9 32987778 32988060 283 * APTX NA 0 NA 1.294 1 NA NA NA NA NA LTS-010 chr9 32988061 34369728 1381668 * c(SNORD121A, SNORD121B, PTENP1, DCAF12, B4GALT1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, UBAP1, CHMP5, APTX, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, NOL6) 0.241172545012029 62 0.059139879805382 1.36735140286989 1805 0.322246782671904 4 3 1 -6.84733846794029 LTS-010 chr9 34369729 35852939 1483211 * c(MIR4667, SIGMAR1, CREB3, UNC13B, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, C9orf131, ATP8B5P, FAM219A, CCDC107, FANCG, PHF24, DNAJB5, GALT, FAM205A, SPAG8, DNAI1, SIT1, STOML2, IL11RA, ENHO, FAM205BP, FAM221B, CNTFR-AS1, NPR2, TMEM8B, KIAA1161, GBA2, RMRP, CCL19, CCL21, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, HINT2, C9orf24, PIGO, ARHGEF39, CD72, RGP1, RUSC2) 0.257873061908758 27 0.0386154612319191 1.50479459841149 3550 0.320011442761517 4 3 1 -6.76715632687537 LTS-010 chr9 35852940 35853048 109 * TMEM8B NA 0 NA 1.38 1 NA NA NA NA NA LTS-010 chr9 35853049 37744565 1891517 * c(GNE, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, LINC00961, FRMPD1, FBXO10, OR13J1, TOMM5, PAX5, TMEM8B, OR2S2, POLR1E, HRCT1, ZCCHC7, RECK, CCIN, LINC00950, GRHPR, MELK, ZBTB5) 0.26180637282322 29 0.0452817398140921 1.41363097690046 1589 0.315365720638831 4 3 1 -6.73946330178721 LTS-010 chr9 37744566 37778498 33933 * c(TRMT10B, FRMPD1) 0.325 1 NA 1.44498412004544 99 0.293489291690941 4 4 0 -5.76441184883076 LTS-010 chr9 37778499 38194519 416021 * c(TRMT10B, EXOSC3, SHB, DCAF10, SLC25A51) 0.315220311518869 11 0.0698060950712107 1.37976777018385 232 0.380308644597052 3 2 1 -6.93257163058432 LTS-010 chr9 38194520 38395636 201117 * ALDH1B1 NA 0 NA 0.899 1 NA NA NA NA NA LTS-010 chr9 38395637 43861081 5465445 * c(FAM95C, FAM201A, ALDH1B1, ANKRD18A, ZNF658, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.413891637282964 8 0.0766327046930449 0.778312209345505 409 0.241901010023651 2 1 1 -6.85248204519283 LTS-010 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.90474411983767 8 0.498579123968446 2 NA NA -5.78655119906888 LTS-010 chr9 65602571 66457127 854557 * LOC286297 0.451 1 NA 0.531655754915046 4 0.162797420126979 1 1 0 -6.63304392258066 LTS-010 chr9 66457128 68409872 1952745 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.34710579858953 22 0.104524453941944 0.549302394109836 54 0.207875960838043 2 1 1 -9.2529313477914 LTS-010 chr9 68409873 68409902 30 * character(0) NA 0 NA 0.928 1 NA NA NA NA NA LTS-010 chr9 68409903 70971798 2561896 * c(FRG1HP, LOC100133920, FOXD4L3, LOC440896, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.284931807139077 7 0.0686280520181764 0.729442320654521 31 0.228064040242237 2 1 1 -8.99471750005604 LTS-010 chr9 70971799 71394895 423097 * c(TMEM252, PGM5, PGM5-AS1, PIP5K1B) 0.457 1 NA 0.770812958864955 102 0.203716996438526 2 2 0 -5.76513174408648 LTS-010 chr9 71394896 100194406 28799511 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MIR4670, BANCR, SEMA4D, SPTLC1, GADD45G, SPIN1, SLC35D2, FAM122A, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, NA NA NA NA NA NA NA NA NA LTS-010 CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, LOC286359, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LINC01501, SPATA31D5P, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, PHF2, SHC3, NUTM2F, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 RFK, KIF27, PRKACG, BARX1, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, KLF9, TLE1, TLE4, ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, CDC14B, FBP2, FGD3, FAM189A2, TJP2, GDA, GNA14) 0.452049722142707 294 0.0516564574946013 0.764624668631198 14413 0.432245193602968 2 1 1 -6.7456345666288 LTS-010 NA NA NA NA LTS-010 chr9 100194407 100421075 226669 * c(TSTD2, TDRD7, NCBP1, TMOD1) NA 0 NA 0.780131455550195 345 0.17301343177137 2 NA NA -5.76678736711721 LTS-010 chr9 100421076 100423178 2103 * NCBP1 NA 0 NA 0.935 1 NA NA NA NA NA LTS-010 chr9 100423179 100432132 8954 * NCBP1 0.294 1 NA 0.986395881172528 33 0.122995873298598 3 3 0 -5.76875335447001 LTS-010 chr9 100432133 103236026 2803894 * c(MSANTD3-TMEFF1, NAMA, ANP32B, SEC61B, COL15A1, ANKS6, FOXE1, ERP44, INVS, STX17-AS1, NCBP1, TRMO, NANS, TEX10, STX17, TBC1D2, HEMGN, TGFBR1, CORO2A, XPA, GALNT12, NR4A3, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.358476574175871 41 0.0604005835055 1.06660648490649 2236 0.266380227462919 3 2 1 -6.78395692737353 LTS-010 chr9 103236027 103260967 24941 * c(MSANTD3-TMEFF1, TMEFF1) NA 0 NA 1.376 1 NA NA NA NA NA LTS-010 chr9 103260968 114145639 10884672 * c(MIR548Q, MSANTD3-TMEFF1, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, KIAA0368, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, NA NA NA NA NA NA NA NA NA LTS-010 TMEM246, IKBKAP, TMEFF1, CTNNAL1, KLF4) 0.327565075136293 133 0.0656002951524072 1.1377818603278 5336 1.5298641733714 3 2 1 -6.7822289525517 LTS-010 NA NA NA NA LTS-010 chr9 114145640 114146701 1062 * KIAA0368 NA 0 NA 0.841 1 NA NA NA NA NA LTS-010 chr9 114146702 115613324 1466623 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, GNG10, SNX30, DNAJC25, DNAJC25-GNG10, INIP, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.339840593432571 36 0.0724127060673747 1.02405129692799 1484 0.246137638271997 3 2 1 -6.81395166515108 LTS-010 chr9 115613325 115626559 13235 * SNX30 NA 0 NA 1.223 1 NA NA NA NA NA LTS-010 chr9 115626560 117074810 1448251 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.332565847284246 85 0.0487665737107354 1.09932104069672 2238 0.418918950586066 3 2 1 -6.77732995918302 LTS-010 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.338 1 NA NA NA NA NA LTS-010 chr9 117085363 117092756 7394 * c(ORM1, ORM2) 0.394084493575158 3 0.0489114846772548 0.445449607827906 75 0.320722207547925 5 3 2 -6.83259564995332 LTS-010 chr9 117092757 118916544 1823788 * c(LOC100505478, TMEM268, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.337095181009715 34 0.034945654268137 1.10491244677868 917 0.29421006782325 3 2 1 -6.77065811029034 LTS-010 chr9 118916545 118916751 207 * PAPPA NA 0 NA 1.892 1 NA NA NA NA NA LTS-010 chr9 118916752 123169521 4252770 * c(SNORA70C, ASTN2-AS1, BRINP1, TRIM32, ASTN2, MIR147A, PAPPA, CDK5RAP2, TLR4) 0.380923052597521 7 0.0299968252288392 1.23855239239168 779 0.259125623440824 3 2 1 -7.9374575042203 LTS-010 chr9 123169522 124241425 1071904 * c(LOC100288842, CNTRL, MEGF9, STOM, PSMD5-AS1, PHF19, FBXW2, GGTA1P, GSN, RAB14, CDK5RAP2, PSMD5, TRAF1, C5) 0.339592036530233 17 0.0419253538341377 1.04978831098456 1593 0.224209191289602 3 2 1 -6.77617914792481 LTS-010 chr9 124241426 125610822 1369397 * c(MIR4478, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, MORN5, OR1L4, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, NDUFA8, PDCL, PTGS1, MRRF, RBM18) 0.320642541081294 23 0.0399937248042167 1.1980777276912 1253 0.349360908047628 3 2 1 -7.00948686824898 LTS-010 chr9 125610823 135942421 10331599 * c(LOC100129034, LOC100272217, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, POMT1, ZBTB6, NEK6, USP20, SLC27A4, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, AK8, TTC16, OLFML2A, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PHYHD1, NA NA NA NA NA NA NA NA NA LTS-010 CIZ1, GAPVD1, NR6A1, SNORA65, SNORD62A, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, QRFP, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, RC3H2, TBC1D13, PTPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 STRBP, PPP6C, LRRC8A, BARHL1, SH3GLB2, PSMB7, DOLPP1, ZBTB26, DENND1A, GPR107, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TSC1, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C5, GTF3C4, LHX2, MED27, PTGES, RALGPS1) 0.340171934057581 276 0.0510898374317344 1.09165255243441 13738 0.308272889632721 3 2 1 -6.74603364682853 LTS-010 NA NA NA NA LTS-010 chr9 135942422 138701068 2758647 * c(LINC01502, RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, CEL, CELP, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, C9orf116, DBH-AS1, CAMSAP1, C9orf62, DBH, STKLD1, SARDH, FCN1, FCN2, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, OBP2A, GLT6D1, TMEM8C, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, REXO4, KCNT1, NA NA NA NA NA NA NA NA NA LTS-010 RALGDS, RPL7A, RXRA, FAM163B, SURF1, SURF2, SURF4, MED22, SURF6, VAV2, BRD3, ADAMTSL2, PPP1R26) 0.356760929850432 113 0.0552687363474711 1.15604390591666 3362 0.507656689065722 3 2 1 -6.77107280538895 LTS-010 NA NA NA NA LTS-010 chr9 138701069 141071755 2370687 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, UBAC1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, NACC2, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, NA NA NA NA NA NA NA NA NA LTS-010 MIR126, LCN10, STPG3, NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.326721532371357 218 0.0679007822836166 1.08654768137017 6321 0.880930451747194 3 2 1 -6.78068822305747 LTS-010 NA NA NA NA LTS-010 chr9 141071756 141071759 4 * TUBBP5 NA 0 NA 1.175 1 NA NA NA NA NA LTS-010 chr10 94832 94870 39 * TUBB8 0.409 1 NA 0.286 1 NA NA NA NA NA LTS-010 chr10 94871 7327108 7232238 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, MIR5699, NET1, ADARB2, PITRM1, ZMYND11, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, DIP2C, LARP4B, GTPBP4, GDI2, LINC00700, LINC00705, AKR1C8P, IDI1, TUBB8, IL2RA, IL15RA, AKR1C6P, LINC00200, LINC00701, LOC399715, PRR26, PRKCQ-AS1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, IDI2-AS1, PRKCQ, SFMBT2, ADARB2-AS1, ASB13, TUBAL3, CALML3, AKR1E2, FBXO18, RBM17, NA NA NA NA NA NA NA NA NA LTS-010 AKR1C3, IDI2) 0.321134054850457 118 0.0654461283194756 1.09051657129405 3654 0.260478923552405 3 2 1 -6.82424654556579 LTS-010 NA NA NA NA LTS-010 chr10 7327109 9281540 1954432 * c(KIN, GATA3, ITIH2, GATA3-AS1, ATP5C1, SFMBT2, ITIH5, TAF3) 0.259815594803123 2 0.0247487373415291 1.40223396330403 682 0.360704154024199 4 3 1 -6.76168635929522 LTS-010 chr10 9281541 9449032 167492 * character(0) NA 0 NA 0.956 1 NA NA NA NA NA LTS-010 chr10 9449033 15151818 5702786 * c(MIR1265, MIR4480, OPTN, RPP38, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, C10orf111, BEND7, SEPHS1, LINC00710, PROSER2, UPF2, NA, ACBD7, CELF2-AS2, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, DCLRE1C, MEIG1, SUV39H2, ECHDC3, FAM107B, CCDC3, PRPF18, CDC123, NMT2, USP6NL) 0.343341783751215 54 0.0559100961718748 1.08208211407944 2893 0.298352035473431 3 2 1 -6.74674746419871 LTS-010 chr10 15151819 15154834 3016 * NMT2 NA 0 NA 0.897 1 NA NA NA NA NA LTS-010 chr10 15154835 15413064 258230 * c(PPIAP30, FAM171A1, NMT2) 0.39378013681831 2 0.0134350288425444 0.761238009042918 172 0.160686527240835 5 3 2 -9.65905725718456 LTS-010 chr10 15413065 15555956 142892 * character(0) NA 0 NA 0.957 1 NA NA NA NA NA LTS-010 chr10 15555957 15729923 173967 * ITGA8 0.355487061241051 9 0.0342750314044754 1.04263130853276 203 0.263476073526198 3 2 1 -6.78455062866146 LTS-010 chr10 15729924 16547058 817135 * c(FAM188A, ITGA8, PTER) 0.487 1 NA 1.07245291684934 145 0.237448119358678 3 3 0 -5.77073765008758 LTS-010 chr10 16547059 16554138 7080 * PTER NA 0 NA 0.907560925888778 24 0.254492415393374 2 NA NA -5.76639902493305 LTS-010 chr10 16554139 17905703 1351565 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, NA, RSU1, TMEM236, VIM, STAM, CUBN, HACD1, PTER) 0.456504660448575 30 0.0311079137656413 0.714854187653188 1045 0.190344286639803 2 1 1 -6.90887394747091 LTS-010 chr10 17905704 17908589 2886 * c(MRC1, NA, TMEM236) NA 0 NA 0.41 1 NA NA NA NA NA LTS-010 chr10 17908590 18087653 179064 * c(MRC1, NA, TMEM236) NA 0 NA 0.182997048784426 44 0.147989171651186 0 NA NA -7.83676113704515 LTS-010 chr10 18087654 18155626 67973 * c(MRC1, NA, TMEM236) NA 0 NA 0.503603504894685 51 0.248162045414511 1 NA NA -5.78439150978426 LTS-010 chr10 18155627 18169510 13884 * MRC1 NA 0 NA 0.643 1 NA NA NA NA NA LTS-010 chr10 18169511 28971876 10802366 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, NA NA NA NA NA NA NA NA NA LTS-010 LINC00264, BMI1, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.432129289506142 84 0.091584950798979 0.785228495488966 5040 0.217607118836111 2 1 1 -6.86041155240807 LTS-010 NA NA NA NA LTS-010 chr10 28971877 29136117 164241 * LINC00837 NA 0 NA 0.66 1 NA NA NA NA NA LTS-010 chr10 29136118 38740382 9604265 * c(MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, SEPT7P9, ITGB1, KIF5B, PTCHD3P1, LINC00999, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ANKRD30A, ARHGAP12) 0.445404914072758 104 0.047114133741454 0.733579456210908 3270 0.417382185636057 2 1 1 -6.78214292968695 LTS-010 chr10 42379859 42379864 6 * character(0) 0.444 1 NA 0.33 1 NA NA NA NA NA LTS-010 chr10 42379865 47000547 4620683 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, LINC00839, ZFAND4, GPRIN2, BMS1) 0.433427428366676 93 0.0807318224879467 0.753409819788133 1984 0.238177972420306 2 1 1 -6.75185784717104 LTS-010 chr10 47000548 47086915 86368 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, GPRIN2) 0.25 1 NA 1.05879553784336 7 0.200785955684156 3 3 0 -5.76644613704167 LTS-010 chr10 47086916 47756065 669150 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.275797013844474 10 0.0949096061172594 0.880403432658023 129 0.307559039835437 3 2 1 -7.24970096458413 LTS-010 chr10 47756066 48370595 614530 * c(ZNF488, CTSLP2, NA, PTPN20, GLUD1P7, NA, NA, NA) 0.474 1 NA 0.767279148457109 52 0.251200492447231 2 2 0 -5.7646396147543 LTS-010 chr10 48370596 51050191 2679596 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.445377657611774 79 0.0411013779776913 0.803279546236259 2228 0.189759918311746 2 1 1 -6.85205573552828 LTS-010 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.398228501421917 39 0.332264517894331 1 NA NA -5.77125280596466 LTS-010 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.71 1 NA NA NA NA NA LTS-010 chr10 51537127 62648852 11111726 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.443226714691964 67 0.0553038807143898 0.812143515535319 3029 0.247324697961787 2 1 1 -7.138730383244 LTS-010 chr10 62648853 71138837 8489985 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A, RHOBTB1) 0.45663750402303 110 0.0319568216302444 0.72395037754362 3749 0.184722191915683 2 1 1 -7.19142373247733 LTS-010 chr10 71138838 71139591 754 * HK1 NA 0 NA 0.793 1 NA NA NA NA NA LTS-010 chr10 71139592 73582521 2442930 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.456124261470725 73 0.037489749994396 0.781708336233944 2758 0.183180605417035 2 1 1 -6.81448522197152 LTS-010 chr10 73582522 73583547 1026 * PSAP NA 0 NA 0.689 1 NA NA NA NA NA LTS-010 chr10 73583548 76995140 3411593 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.44600910141981 119 0.0650142238991993 0.72960389873672 3660 0.169737805746022 2 1 1 -6.86822533455171 LTS-010 chr10 76995141 76995350 210 * COMTD1 NA 0 NA 0.893 1 NA NA NA NA NA LTS-010 chr10 76995351 89312955 12317605 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, GRID1-AS1, MIR4678, PPIF, NRG3, ADIRF, POLR3A, LDB3, COMTD1, AGAP11, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, ZNF503-AS1, LRIT1, GHITM, GLUD1, ZMIZ1-AS1, GRID1, ANXA11, LRIT2, KCNMA1, SH2D4B, C10orf99, LINC00595, MAT1A, LINC00857, LINC00863, MIR346, CCSER2, FAM35A, ZMIZ1, RGR, RPS24, LOC642361, FAM25A, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NA NA NA NA NA NA NA NA NA LTS-010 NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, MMRN2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, CDHR1, DLG5, OPN4, MINPP1) 0.440141489785117 128 0.0534528219158513 0.792833442136993 4330 0.192279013494916 2 1 1 -7.02755823462927 LTS-010 NA NA NA NA LTS-010 chr10 89312956 106907586 17594631 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, NA NA NA NA NA NA NA NA NA LTS-010 GSTO2, SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, DNTT, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, R3HCC1L, POLL, GOT1, BLOC1S2, FLJ37201, BLNK, HELLS, KCNIP2, HHEX, TLX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 HPS1, HTR7, FFAR4, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, CC2D2B, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf62, IFIT1B, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, PANK1, EXOC6, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, AS3MT, MIR146B, STAMBPL1, SEMA4G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ALDH18A1, ACTA2, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, LIPK, LIPN, LINC00865, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ATAD1, ARHGAP19, LIPF, ITPRIP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A) 0.454729400274431 350 0.0465728920010447 0.756608047901036 18208 0.191830113640957 2 1 1 -6.77745083639813 LTS-010 NA NA NA NA LTS-010 chr10 106907587 106907590 4 * SORCS3 NA 0 NA 0.78 1 NA NA NA NA NA LTS-010 chr10 106907591 106916847 9257 * SORCS3 NA 0 NA 0.46 1 NA NA NA NA NA LTS-010 chr10 106916848 108339116 1422269 * c(SORCS1, SORCS3) 0.127 1 NA 0.487529258574243 155 0.127320458701741 1 1 0 -6.66829301162013 LTS-010 chr10 108339117 109654703 1315587 * SORCS1 0.131507143063147 5 0.0245214192085205 0.411268994162544 139 0.115324233192069 1 1 0 -7.67932856330063 LTS-010 chr10 109654704 112840621 3185918 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.432513983547662 14 0.0570569890548038 0.7228580905178 1079 0.167692379667878 2 1 1 -6.94824060239945 LTS-010 chr10 113909622 114224443 314822 * c(VTI1A, GUCY2GP, ACSL5, GPAM, ZDHHC6, TECTB) 0.0857243532402861 5 0.0212061311888803 0.441291279074883 506 0.101921340400362 1 1 0 -6.99481511628725 LTS-010 chr10 114224444 114286743 62300 * VTI1A NA 0 NA 0.754 1 NA NA NA NA NA LTS-010 chr10 114286744 115312811 1026068 * c(MIR4295, VTI1A, HABP2, TCF7L2) 0.312554130708018 3 0.212741627332311 0.831986882674357 263 0.181151241103583 2 1 1 -7.09574123209104 LTS-010 chr10 115312812 115332413 19602 * HABP2 0.484 1 NA 0.767088989051922 11 0.128682767088117 2 2 0 -5.76443586489647 LTS-010 chr10 115332414 118139402 2806989 * c(MIR2110, MIR4483, TRUB1, ADRB1, ATRNL1, GFRA1, HABP2, VWA2, NHLRC2, CCDC172, ABLIM1, NRAP, CCDC186, TDRD1, FAM160B1, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.447738543063502 45 0.0670233413284378 0.763033213197119 2342 0.183676531689323 2 1 1 -6.73422901380743 LTS-010 chr10 118139403 118139485 83 * CCDC172 NA 0 NA 0.828 1 NA NA NA NA NA LTS-010 chr10 118139486 119308575 1169090 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.45135963317878 16 0.0526266329912906 0.844314549225944 1176 0.198124738723789 2 1 1 -6.92259408789362 LTS-010 chr10 119308576 121619398 2310823 * c(MIR4681, PRDX3, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.467395032913927 20 0.020543855529087 0.727024946594332 1487 0.150126199335474 2 1 1 -7.52074767711718 LTS-010 chr10 121619399 121632260 12862 * MCMBP NA 0 NA 1.076 1 NA NA NA NA NA LTS-010 chr10 121632261 124337307 2705047 * c(MIR3941, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, DMBT1, PLPP4, FGFR2, WDR11-AS1, ARMS2, NSMCE4A, WDR11, HTRA1, PLEKHA1, MCMBP) 0.448895509007912 29 0.0435952046895204 0.779531573585261 1327 0.182090527979016 2 1 1 -6.76222056586525 LTS-010 chr10 124337308 124351472 14165 * DMBT1 NA 0 NA 0.486072345220012 39 0.191303353366967 1 NA NA -5.76886516584639 LTS-010 chr10 124351473 124357353 5881 * DMBT1 NA 0 NA 0.834 1 NA NA NA NA NA LTS-010 chr10 124357354 127585090 3227737 * c(TEX36-AS1, MIR4296, FAM24B-CUZD1, MIR4484, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, FAM24B, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, DHX32, BCCIP, LHPP, IKZF5, UROS, C10orf88, BUB3, FAM53B) 0.433649259042149 56 0.0687914573939934 0.784083543117446 2376 0.201103890172632 2 1 1 -6.78580971183297 LTS-010 chr10 127585091 127585097 7 * character(0) 0.227 1 NA 0.061 1 NA NA NA NA NA LTS-010 chr10 127585098 127585263 166 * FANK1 0.320090993970972 9 0.0988282741819252 0.186564364798123 14 0.212931255996436 16 11 5 -6.75935956435626 LTS-010 chr10 127585264 127668317 83054 * c(FANK1-AS1, FANK1) 0.451 1 NA 0.817659091849272 3 0.243807984556153 2 2 0 -5.76849891184408 LTS-010 chr10 127668318 131967693 4299376 * c(MIR4297, LINC00601, GLRX3, C10orf90, CTAGE7P, CLRN3, DOCK1, EBF3, LINC00959, FOXI2, MGMT, MKI67, PTPRE, NPS, FAM196A, ADAM12, FANK1) 0.457777174843516 41 0.0387617645398646 0.804769328712533 1691 0.237763450067019 2 1 1 -6.92986504851166 LTS-010 chr10 131967694 131973284 5591 * GLRX3 NA 0 NA 0.718478852644222 13 0.0842984624369316 2 NA NA -5.76607765075553 LTS-010 chr10 131973285 131977465 4181 * GLRX3 NA 0 NA 1.16 1 NA NA NA NA NA LTS-010 chr10 131977466 132915202 937737 * c(MIR378C, GLRX3, TCERG1L) 0.273 1 NA 1.12561006955037 43 0.313795531610816 3 3 0 -5.76702268120998 LTS-010 chr10 132915203 134691597 1776395 * c(DPYSL4, C10orf91, PWWP2B, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC01164, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.342532692255916 41 0.0522573253121559 1.17645618487292 1020 0.326562289067665 3 2 1 -6.77812842787416 LTS-010 chr10 134691598 134692910 1313 * CFAP46 NA 0 NA 0.73 1 NA NA NA NA NA LTS-010 chr10 134692911 134756359 63449 * CFAP46 0.309780270362341 12 0.0298155948619124 0.619312520220105 183 0.147174756039303 3 2 1 -8.03669091493962 LTS-010 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.79 1 NA NA NA NA NA LTS-010 chr10 134884462 135381522 497061 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.370385146471454 28 0.0583406684730609 1.15419422990882 1352 0.357559088586449 3 2 1 -6.84224361215644 LTS-010 chr10 135381523 135381592 70 * c(SPRNP1, SYCE1) 0.323 1 NA 0.468 1 NA NA NA NA NA LTS-010 chr10 135381593 135473116 91524 * c(SPRNP1, FRG2B, SYCE1) NA 0 NA 0.659289473031085 39 0.294165844141785 2 NA NA -5.77780018014684 LTS-010 chr11 193025 193194 170 * SCGB1C1 0.281 1 NA 0.473802016077165 3 0.340638126658384 1 1 0 -5.76442129180365 LTS-010 chr11 193195 790634 597440 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.352115569915921 97 0.071766276276904 1.05152070912071 2187 0.319727846959874 3 2 1 -6.74521970086342 LTS-010 chr11 790635 1013167 222533 * c(AP2A2, CRACR2B, MUC6, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, CHID1, TSPAN4, SLC25A22, CD151) 0.328503611240924 31 0.0770681725863956 1.10574449201997 765 0.304180792476871 3 2 1 -6.76333371768172 LTS-010 chr11 1013168 1016834 3667 * MUC6 0.262 1 NA 1.10590103538275 37 0.124759185450829 3 3 0 -5.76441209302475 LTS-010 chr11 1016835 1295596 278762 * c(MUC2, MUC6, MUC5B) 0.306458637692981 141 0.0925792702314927 1.13221806176568 1068 0.294646858401949 3 2 1 -6.84122746946338 LTS-010 chr11 1295597 1296237 641 * TOLLIP 0.243 1 NA 1.15041481631565 17 0.668993081165313 3 3 0 -5.76441173475984 LTS-010 chr11 1296238 2946497 1650260 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MOB2, SYT8, BRSK2, CD81) 0.337050959829002 60 0.0432686098559921 1.13944100653275 1880 0.272036294275228 3 2 1 -6.7728759727721 LTS-010 chr11 2946498 2950040 3543 * PHLDA2 NA 0 NA 0.83 1 NA NA NA NA NA LTS-010 chr11 2950041 3400422 450382 * c(OSBPL5, MRGPRE, MRGPRG-AS1, MRGPRG, NAP1L4, SNORA54, PHLDA2, ZNF195, CARS) 0.348238035997698 23 0.0678339929009444 1.04913686875185 619 0.24100021807592 3 2 1 -6.7449022132488 LTS-010 chr11 3400423 3659993 259571 * c(OR7E12P, ART5, TSSC2, TRPC2, ZNF195) 0.386 1 NA 1.04539163651919 7 0.250597761552728 3 3 0 -5.77124986636266 LTS-010 chr11 3659994 3839186 179193 * c(ART5, PGAP2, ART1, NUP98, CHRNA10) 0.3 1 NA 1.05881981681466 382 0.223666600814857 3 3 0 -5.76780962838447 LTS-010 chr11 3839187 3844062 4876 * PGAP2 NA 0 NA 1.561 1 NA NA NA NA NA LTS-010 chr11 3844063 5777005 1932943 * c(LOC100506082, MIR4687, TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, NA NA NA NA NA NA NA NA NA LTS-010 MMP26, RRM1, TRIM21, STIM1, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, TRIM5) 0.338259962625531 114 0.0568087408621955 1.20101560282695 2342 0.273765997227717 3 2 1 -6.8566639567318 LTS-010 NA NA NA NA LTS-010 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 2.251 1 NA NA NA NA NA LTS-010 chr11 5798827 5809669 10843 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 1.93381700580793 39 0.515516469930138 5 NA NA -5.76457736147731 LTS-010 chr11 5809670 5809675 6 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 1.403 1 NA NA NA NA NA LTS-010 chr11 5809676 6048056 238381 * c(TRIM22, OR56A4, OR56A1, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.311470941878844 13 0.0241246761636296 1.26052601075792 231 0.267975829244521 3 2 1 -7.79209129266615 LTS-010 chr11 6048057 6238960 190904 * c(OR52W1, OR56A1, C11orf42, OR56B4, OR52B2, FAM160A2) 0.442 1 NA 1.19533435621648 221 0.217264088809683 3 3 0 -5.78048003670765 LTS-010 chr11 6238961 8752380 2513420 * c(TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, RRP8, ARFIP2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR10A6, LMO1, CYB5R2, RPL27A, SNORA3A, MRPL17, STK33, SMPD1, ST5, SNORA3B, TAF10, TUB, ZNF214, ZNF215, RIC3, FAM160A2, PPFIBP2, OR6A2, DCHS1, EIF3F, CCKBR, TRIM66) 0.338173834117434 123 0.0471725262673048 1.14449672432089 4247 0.243598550881332 3 2 1 -6.78545224917254 LTS-010 chr11 8752381 8752479 99 * ST5 NA 0 NA 1.144 1 NA NA NA NA NA LTS-010 chr11 8752480 17397188 8644709 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, NCR3LG1, INSC, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPS13, LOC644656, RASSF10, NA NA NA NA NA NA NA NA NA LTS-010 ST5, SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.344889167980866 88 0.0500220627916844 1.08356844819423 5406 0.448730845605554 3 2 1 -6.74041328875807 LTS-010 NA NA NA NA LTS-010 chr11 17397189 17868370 471182 * c(USH1C, SERGEF, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8) 0.358994912902659 27 0.0612989963340914 1.20309497538632 1068 0.359642291207485 3 2 1 -6.77730684134839 LTS-010 chr11 17868371 17899624 31254 * SERGEF NA 0 NA 0.832 1 NA NA NA NA NA LTS-010 chr11 17899625 18636620 736996 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, LDHAL6A, SERGEF, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.323437234019817 30 0.095906827391119 1.03478691814718 1210 0.26532322489142 3 2 1 -6.79028122691668 LTS-010 chr11 18636621 31128573 12491953 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, ARL14EP, MUC15, SPTY2D1, TMEM86A, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.342477071246916 62 0.0554307968702514 1.1856863498358 3972 0.268611343317506 3 2 1 -7.24821998316733 LTS-010 chr11 31128574 31131731 3158 * c(DCDC5, DCDC1) NA 0 NA 1.049 1 NA NA NA NA NA LTS-010 chr11 31131732 34130342 2998611 * c(C11orf91, DCDC5, HIPK3, EIF3M, DNAJC24, CSTF3, IMMP1L, KIAA1549L, FBXO3, ELP4, LINC00294, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, WT1, PRRG4, QSER1, DEPDC7, CD59) 0.370171282634977 33 0.0434159541615473 1.10475992817798 2489 0.254945833749997 3 2 1 -6.91566934210194 LTS-010 chr11 34130343 34133552 3210 * NAT10 0.247 1 NA 1.0673762996039 3 0.13779090439261 3 3 0 -5.76451225872795 LTS-010 chr11 34133553 34188981 55429 * c(ABTB2, NAT10) 0.149561364259674 9 0.0967548448399355 1.14479728999284 219 0.264713117549274 6 5 1 -6.96623952129721 LTS-010 chr11 34188982 34460472 271491 * c(ABTB2, CAT) 0.321 1 NA 1.11493496082372 63 0.214031689850154 3 3 0 -5.76491011791791 LTS-010 chr11 34460473 34903947 443475 * c(ELF5, EHF, APIP, CAT) 0.331159138028397 14 0.036183673690744 1.05630390856372 283 0.240767585074913 3 2 1 -6.83864696342347 LTS-010 chr11 34903948 34904067 120 * APIP NA 0 NA 0.945 1 NA NA NA NA NA LTS-010 chr11 34904068 35339142 435075 * c(MIR1343, APIP, SLC1A2, PDHX, CD44) 0.369314464177488 34 0.0451690526301806 0.942035914804705 611 0.266519104242836 3 2 1 -6.97942077874206 LTS-010 chr11 35339143 35344125 4983 * SLC1A2 NA 0 NA 1.385 1 NA NA NA NA NA LTS-010 chr11 35344126 47447583 12103458 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, FJX1, PAMR1, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, NA NA NA NA NA NA NA NA NA LTS-010 RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.356780565341892 86 0.0472528895171021 1.11734823011223 5380 0.2999472851789 3 2 1 -6.78071908729286 LTS-010 NA NA NA NA LTS-010 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.977 1 NA NA NA NA NA LTS-010 chr11 47447717 47611152 163436 * c(CELF1, PTPMT1, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.34495972176627 3 0.0595734840344259 1.00318977605111 321 0.193862990769335 3 2 1 -6.75601408431715 LTS-010 chr11 47611153 47640355 29203 * c(C1QTNF4, MTCH2) 0.168 1 NA 0.95898853494144 63 0.22786779658147 3 3 0 -5.77090535677959 LTS-010 chr11 47640356 48238467 598112 * c(OR4B1, NUP160, FNBP4, MTCH2, PTPRJ, AGBL2) 0.303102204839349 20 0.0753410491313369 1.02577592949322 724 0.215825803955332 3 2 1 -6.95944536758779 LTS-010 chr11 48238468 48238549 82 * OR4B1 0.335 1 NA 1.78 1 NA NA NA NA NA LTS-010 chr11 48238550 51411314 3172765 * c(OR4X2, OR4B1, FOLH1, OR4C3, OR4S1, OR4C13, OR4C12, TRIM49B, OR4X1, OR4A47, OR4C45, LOC440040, LOC441601, TRIM64C, LOC646813) 0.316713051036014 147 0.0838049513592872 1.2324187301516 705 0.558911049353669 3 2 1 -6.880293219648 LTS-010 chr11 51411315 51527703 116389 * c(OR4C46, OR4A5) NA 0 NA 1.1640396738452 63 0.163551991636464 3 NA NA -5.77228511479967 LTS-010 chr11 55035776 55035847 72 * TRIM48 0.384 1 NA 0.709027469895523 5 0.210307394068777 2 2 0 -5.76441522377942 LTS-010 chr11 55035848 55340582 304735 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) 0.343508789920626 7 0.0236321008477069 1.15757949348872 94 0.244516793159101 3 2 1 -6.74642568621136 LTS-010 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-010 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.448411084055845 67 0.0594219212231085 1 NA NA -5.79203420973201 LTS-010 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.144 1 NA NA NA NA NA LTS-010 chr11 55432533 56143198 710666 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8U8, OR8J3, TRIM51) 0.312139115851529 22 0.0806349397376442 1.24092070121781 603 0.238690354628183 3 2 1 -6.94019017975782 LTS-010 chr11 56143199 56143204 6 * OR8U8 0.014 1 NA 1.306 1 NA NA NA NA NA LTS-010 chr11 56143205 56143528 324 * OR8U8 0.18089696409124 11 0.117139311001125 1.66236113236608 17 0.317757815658033 6 5 1 -6.73318960768155 LTS-010 chr11 56143529 56143570 42 * OR8U8 0.305 1 NA 1.66867417045804 3 0.133 5 5 0 -5.76441597620606 LTS-010 chr11 56143571 57102087 958517 * c(APLNR, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR9G4, OR5AP2, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, SSRP1, TNKS1BP1) 0.329518577487707 57 0.0874214075971422 1.21405137341091 778 0.260062991696297 3 2 1 -6.83292823360855 LTS-010 chr11 57102088 57102444 357 * SSRP1 NA 0 NA 1.156 1 NA NA NA NA NA LTS-010 chr11 57102445 60567491 3465047 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, NA NA NA NA NA NA NA NA NA LTS-010 P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.335364016239145 74 0.0692769554529557 1.14388098341089 3877 0.229883061772373 3 2 1 -6.80156436193289 LTS-010 NA NA NA NA LTS-010 chr11 60567492 60609972 42481 * c(MS4A10, CCDC86) 0.395 1 NA 0.89495207038496 25 0.224801208478365 2 2 0 -5.7773239543667 LTS-010 chr11 60609973 61905418 1295446 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, FTH1, TKFC, DKFZP434K028, PRPF19, INCENP, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, SYT7, CD5, CD6, FADS2) 0.35300491829861 41 0.0543297295428122 1.13590602329489 2926 0.258644189053814 3 2 1 -6.75416646510135 LTS-010 chr11 61905419 61906160 742 * INCENP NA 0 NA 0.879 1 NA NA NA NA NA LTS-010 chr11 61906161 68821573 6915413 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, NA NA NA NA NA NA NA NA NA LTS-010 CTSW, GRK2, GPHA2, EEF1G, MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, GSTP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INCENP, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, ROM1, RPS6KB2, FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, METTL12, SF1, ZFPL1, LRFN4, AHNAK, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, ASRGL1, TMEM134, MUS81, FOSL1, INTS5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.340453854330054 228 0.0582903040375248 1.09224630552201 16376 0.257328330905552 3 2 1 -6.74293098273774 LTS-010 NA NA NA NA LTS-010 chr11 68821574 68822145 572 * TPCN2 NA 0 NA 1.361 1 NA NA NA NA NA LTS-010 chr11 68822146 78365400 9543255 * c(KCNE3, LOC100129216, LOC100133315, KCTD21-AS1, MIR548K, MIR3165, MIR3664, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, CLNS1A, XRRA1, DHCR7, B3GNT6, CTTN, TPCN2, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, AQP11, P4HA3, PGM2L1, KLHL35, NA NA NA NA NA NA NA NA NA LTS-010 LOC283214, KCTD21, ALG1L9P, AAMDC, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, PAK1, COA4, PDE2A, PPME1, MRPL48, RSF1, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, ACER3, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, RAB6A, CCND1, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, INTS4, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.329149821613924 97 0.0641266516235926 1.12890768461763 9598 0.291167693368614 3 2 1 -6.81316759254873 LTS-010 NA NA NA NA LTS-010 chr11 78365401 78523426 158026 * TENM4 0.334 1 NA 1.29983987123776 256 0.241347545268707 4 4 0 -5.78168436040921 LTS-010 chr11 78523427 78525345 1919 * TENM4 NA 0 NA 0.885 1 NA NA NA NA NA LTS-010 chr11 78525346 92086030 13560685 * c(NAALAD2, MIR708, SNORA70E, MIR4300, RAB30-AS1, LOC100506368, MIR4490, MIR5579, GRM5-AS1, CTSC, ME3, PRSS23, FAT3, TRIM64, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, TENM4, CHORDC1, RAB30, GRM5, ANKRD42, TRIM77, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, TRIM49, CREBZF, CCDC90B, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.338676689182166 88 0.0715810760194071 1.07911646457656 3827 0.275503409917745 3 2 1 -6.78507095665349 LTS-010 chr11 92086031 92715627 629597 * c(FAT3, MTNR1B) 0.341489178987292 4 0.0359107690440254 1.27755564264784 451 0.21869439628226 3 2 1 -6.91013915440936 LTS-010 chr11 92715628 92715633 6 * MTNR1B NA 0 NA 1.057 1 NA NA NA NA NA LTS-010 chr11 92715634 101827626 9111993 * c(MIR1304, MIR1260B, MIR3920, JRKL-AS1, LOC101054525, GPR83, SLC36A4, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, ANGPTL5, C11orf54, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, MTNR1B, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, CEP126, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TAF1D, CCDC82, TMEM133, MAML2, CEP295, JRKL, MTMR2, MED17, CEP57) 0.335410048470694 59 0.0427156268926247 1.12217434176277 3926 0.255518939587623 3 2 1 -6.79674531578846 LTS-010 chr11 101827627 101828908 1282 * CEP126 NA 0 NA 0.621 1 NA NA NA NA NA LTS-010 chr11 101828909 105852799 4023891 * c(WTAPP1, CASP12, MIR4693, YAP1, CARD16, TMEM123, GRIA4, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, CEP126, CARD18, MMP27, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, DCUN1D5, C11orf70, MMP20) 0.334512367728996 79 0.0671866366289644 1.05975481557436 2461 0.252656772359228 3 2 1 -6.80679638078459 LTS-010 chr11 105852800 107197351 1344552 * c(KBTBD3, CWF19L2, GRIA4, GUCY1A2, AASDHPPT, MSANTD4) 0.0703816634321527 5 0.121805172303971 0.807716289263833 406 0.241390243586935 2 2 0 -6.78819514906913 LTS-010 chr11 107197352 109298127 2100776 * c(CWF19L2, KDELC2, C11orf65, DDX10, EXPH5, ACAT1, C11orf87, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, LOC643923, SLN, CUL5, ALKBH8) 0.338564636494407 19 0.0927295318756185 1.14253714848278 1877 0.27060707517648 3 2 1 -6.75935604788951 LTS-010 chr11 109298128 109299820 1693 * C11orf87 NA 0 NA 1.15396582515216 37 0.301882091713466 3 NA NA -5.76443398052354 LTS-010 chr11 109963856 109964007 152 * ZC3H12C 0.109 1 NA 0.256409322369583 3 0.34275501455121 1 1 0 -5.76460371412077 LTS-010 chr11 109964008 114271222 4307215 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, DRD2, FDX1, SIK2, ANKK1, TIMM8B, HSPB2, HTR3A, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, NNMT, C11orf71, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, ZBTB16, ALG9, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ZW10, FDXACB1) 0.055339286329534 66 0.04872441172932 0.751981717182699 3536 0.190194845773916 2 2 0 -6.74677239859985 LTS-010 chr11 114271223 114421747 150525 * c(RBM7, NXPE1, REXO2, C11orf71) 0.453 1 NA 0.751625204583861 257 0.17831820934852 2 2 0 -5.7649946317511 LTS-010 chr11 114421748 114421967 220 * NXPE1 0.367728295753585 13 0.143840456489393 0.674789811725946 17 0.102233764711365 3 2 1 -6.74988381976312 LTS-010 chr11 114421968 116629949 2207982 * c(NXPE1, NXPE2, CADM1, LINC00900, NXPE4, BUD13) 0.07 1 NA 0.786818559983426 287 0.137969361980834 2 2 0 -5.83231502576407 LTS-010 chr11 116629950 119170254 2540305 * c(LOC100131626, BACE1-AS, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, SLC37A4, RNF214, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, NA NA NA NA NA NA NA NA NA LTS-010 TAGLN, UPK2, NLRX1, PDZD3, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.0609625258373844 81 0.0377911291766262 0.760533526674301 5735 0.295314025103843 2 2 0 -6.74797942950779 LTS-010 NA NA NA NA LTS-010 chr11 119170255 134251777 15081523 * c(LOC100128239, PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, NA NA NA NA NA NA NA NA NA LTS-010 MIR4697HG, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, THY1, ZNF202, RNF26, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, MFRP, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, GLB1L2, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.0580906803757866 244 0.0434204128714791 0.797947385848037 11104 0.219078353496376 2 2 0 -7.1023549251905 LTS-010 NA NA NA NA LTS-010 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 0.853658446080983 39 0.134355175153093 2 NA NA -6.0105286564696 LTS-010 chr12 90923 247900 156978 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.366 1 NA 1.08394794732781 41 0.264652282226708 3 3 0 -5.76476862022664 LTS-010 chr12 247901 1599993 1352093 * c(ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, CCDC77) 0.329998620041768 33 0.0517570446090836 1.06721787123636 1498 0.237295646450057 3 2 1 -6.80348152160072 LTS-010 chr12 1599994 1599996 3 * ERC1 NA 0 NA 1.575 1 NA NA NA NA NA LTS-010 chr12 1599997 3765681 2165685 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, LOC283440, ITFG2, PRMT8, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CRACR2A, CACNA2D4) 0.329812509304092 45 0.0505493258454981 1.1751985181022 2056 0.497905849035226 3 2 1 -6.81464011065616 LTS-010 chr12 3765682 3768701 3020 * CRACR2A NA 0 NA 1.002 1 NA NA NA NA NA LTS-010 chr12 3768702 7654076 3885375 * c(LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, FGF6, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NDUFA9, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, NA NA NA NA NA NA NA NA NA LTS-010 SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, FGF23, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CD163, CD27, CLSTN3, NCAPD2) 0.352741292019548 115 0.0489108561931491 1.10680898110451 5670 0.302367084691265 3 2 1 -6.74540137755877 LTS-010 NA NA NA NA LTS-010 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.848 1 NA NA NA NA NA LTS-010 chr12 7655021 9590665 1935645 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.330671534894561 72 0.0832858632401049 1.048106131039 2207 0.246693044219188 3 2 1 -6.80016917963109 LTS-010 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.028 1 NA NA NA NA NA LTS-010 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.0494539774806662 95 0.0472760827006714 0 NA NA -9.1751427162374 LTS-010 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.723 1 NA NA NA NA NA LTS-010 chr12 9747241 10579525 832285 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.34697575648281 19 0.0335642005052341 1.01128736061439 1102 0.25481926921799 3 2 1 -6.78966592742036 LTS-010 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 2.336 1 NA NA NA NA NA LTS-010 chr12 10583165 10588456 5292 * c(KLRC2, KLRC3) NA 0 NA 1.82906232209139 40 0.379653364166679 5 NA NA -5.76442614689198 LTS-010 chr12 10588457 11149390 560934 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.358557410053907 25 0.083201061691944 1.04044644777541 636 0.296790235997797 3 2 1 -6.75948023390743 LTS-010 chr12 11149391 11174213 24823 * c(PRH1-PRR4, TAS2R20, PRB4) 0.139 1 NA 1.06922130210437 22 0.125061404831207 3 3 0 -5.76526742812698 LTS-010 chr12 11174214 11338589 164376 * c(SMIM10L1, PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.186302714567232 36 0.103047731273594 1.03887006070706 160 0.210925013408667 4 3 1 -7.28899681536519 LTS-010 chr12 11338590 11338669 80 * c(TAS2R42, PRB4) 0.286 1 NA 1.15180103036947 3 0.0725005747103658 3 3 0 -5.76442790293417 LTS-010 chr12 11338670 32908673 21570004 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-010 SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.334116968472326 290 0.0682827295426908 1.09279745671945 11538 0.883042919307059 3 2 1 -6.75184450032508 LTS-010 NA NA NA NA LTS-010 chr12 32908674 34180172 1271499 * c(SYT10, YARS2, PKP2, ALG10) 0.358391793984071 15 0.0389095410015639 1.21595134221161 285 0.347529658309894 3 2 1 -6.85538733642941 LTS-010 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.16464474113841 13 0.234044319712621 3 NA NA -5.76449434929327 LTS-010 chr12 38710341 38710459 119 * character(0) 0.376 1 NA 0.504938958222218 3 0.368142635401009 1 1 0 -5.76442643446536 LTS-010 chr12 38710460 68646663 29936204 * c(HOTAIR, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1228, MIR1293, LOC100335030, MIR548Z, LOC100506844, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, CTDSP2, YAF2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, WIF1, ADCY6, IRAK3, GALNT6, NXPH4, XPOT, KRT71, GPR182, LARP4, SLC2A13, MBD6, ARHGEF25, NA NA NA NA NA NA NA NA NA LTS-010 C12orf56, AGAP2, DCD, MUCL1, LRRK2, FAM186A, OR2AP1, OR10P1, SDR9C7, LRIG3, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, CNTN1, COL2A1, ASB8, MYL6B, KRT72, CS, PRICKLE1, BCDIN3D, ALG10B, CPNE8, KRT80, C12orf66, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ANO6, ARID2, EIF4B, CELA1, RPSAP52, ERBB3, ABCD2, COPZ1, R3HDM2, FAIM2, MON2, DDN, NEMP1, TBC1D30, ESYT1, TNS2, KCNH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GRIP1, CBX5, ANP32D, SMUG1, LEMD3, STAC3, MSRB3, OR6C74, OR6C3, LINC00935, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, GLI1, GNS, GPD1, LOC283332, LOC283335, ZNF740, RASSF3, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, LINC01465, DPY19L2, C12orf40, GXYLT1, TMPRSS12, KRT6C, ORMDL2, TBK1, RACGAP1, SENP1, PDZRN4, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, FAM19A2, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, IFNG, AMIGO2, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, ARF3, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FLJ41278, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FIGNL2, OR6C65, OR6C68, LRP1, MIRLET7I, MIR196A2, MIR26A2, ASIC1, MARS, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NELL2, NFE2, SLC11A2, PA2G4, ATP5B, IL22, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, PPHLN1, IL23A, HDAC7, TMBIM4, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, AVPR1A, PRIM1, KIF21A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SLC48A1, PRKAG1, LMBR1L, IL26, CAND1, PRPH, NDUFA4L2, SMAGP, PPM1H, SRGAP1, TWF1, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, SUOX, TAC3, TARBP2, SNORD59B, MIR548C, MIR615, TMBIM6, TFCP2, VDR, WNT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, PIP4K2C, DNAJC22, ADAMTS20, KMT2D, AAAS, HMGA2, SLC38A1, CSRNP2, PUS7L, INHBE, RACGAP1P, FAM186B, TMEM117, LLPH, PYM1, SARNP, SOAT2, DYRK2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, ATP23, PCED1B, SCAF11, SLC16A7, HELB, MARCH9, COQ10A, ACVRL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2, USP15) 0.331856282209548 485 0.0620782597600685 1.10531858179308 31870 0.435581411455419 3 2 1 -6.76438374845913 LTS-010 NA NA NA NA LTS-010 chr12 68646664 68646980 317 * IL22 NA 0 NA 0.974 1 NA NA NA NA NA LTS-010 chr12 68646981 69651693 1004713 * c(LOC100130075, SNORA70G, LOC100507250, CPSF6, CPM, MDM2, IL22, SLC35E3, MDM1, NUP107, RAP1B) 0.314398327076267 11 0.0445780214904161 0.987031440702763 751 0.210453246929964 3 2 1 -7.17826802494239 LTS-010 chr12 69651694 75685652 6033959 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.348813846041687 67 0.0571135213352541 1.11854392386031 3048 0.27787238111798 3 2 1 -6.74528964786616 LTS-010 chr12 75685653 75687006 1354 * CAPS2 NA 0 NA 0.855 1 NA NA NA NA NA LTS-010 chr12 75687007 77427765 1740759 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.298743065669346 33 0.0859053831170367 1.02608644382313 1315 0.320680856087864 3 2 1 -6.95934953037219 LTS-010 chr12 77427766 89743126 12315361 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, TMTC2, TMTC3, C12orf50, DUSP6, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.345013018063798 55 0.0641541441276728 1.1457890916261 3561 0.300963582214922 3 2 1 -6.85567041738778 LTS-010 chr12 89743127 110815780 21072654 * c(TMPO-AS1, USP30-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4497, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DAO, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, NA NA NA NA NA NA NA NA NA LTS-010 ELK3, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, MRPL42, IFT81, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, C12orf76, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MVK, MYBPC1, NFYB, ATP2A2, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, GLTP, CDK17, ANAPC7, NT5DC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SLC25A3, PMCH, SSH1, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, TRPV4, RFX4, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, GNPTAB, MTERF2, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, USP30, FAM222A, FAM222A-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GALNT4, CRADD, SOCS2, ANKRD13A, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, NR1H4) 0.331672751713733 310 0.062452285910529 1.08963490997736 15463 0.3185755820506 3 2 1 -6.77914077606403 LTS-010 NA NA NA NA LTS-010 chr12 110815781 110819597 3817 * ANAPC7 NA 0 NA 0.822 1 NA NA NA NA NA LTS-010 chr12 110819598 111169975 350378 * c(ARPC3, RAD9B, PPTC7, FAM216A, GPN3, ANAPC7, VPS29, PPP1CC, TCTN1, HVCN1) 0.357379426720757 13 0.0602190446066137 0.984660667234354 744 0.207925630905854 3 2 1 -6.8157055526875 LTS-010 chr12 111169976 111170211 236 * PPP1CC NA 0 NA 1.168 1 NA NA NA NA NA LTS-010 chr12 111170212 113266279 2096068 * c(LINC01405, SH2B3, TRAFD1, ERP29, FAM109A, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, MYL2, MAPKAPK5-AS1, PPP1CC, PTPN11, RPL6, ATXN2, NAA25, ACAD10, BRAP, MAPKAPK5, ADAM1A, TMEM116) 0.301696299862714 5 0.095117296008665 1.0833879780786 2267 0.249472017720222 3 2 1 -6.86540832146506 LTS-010 chr12 113266280 113269541 3262 * RPH3A NA 0 NA 1.125 1 NA NA NA NA NA LTS-010 chr12 113269542 120638512 7368971 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19) 0.333894353034071 101 0.053965667487086 1.13732713957376 5237 0.26192600302483 3 2 1 -6.82663919446497 LTS-010 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 0.898 1 NA NA NA NA NA LTS-010 chr12 120638602 124325977 3687376 * c(MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, NA NA NA NA NA NA NA NA NA LTS-010 DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.32392546043913 159 0.0695109848024036 1.05416942185223 6718 0.243861678516086 3 2 1 -6.86396518352701 LTS-010 NA NA NA NA LTS-010 chr12 124325978 124326058 81 * DNAH10 NA 0 NA 1.169 1 NA NA NA NA NA LTS-010 chr12 124326059 133298771 8972713 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, CCDC92, PUS1, ULK1, NA NA NA NA NA NA NA NA NA LTS-010 TMEM132C, PIWIL1, SCARB1, NCOR2) 0.351888538170026 151 0.0539237586220523 1.13779049904396 4821 0.311115248213272 3 2 1 -6.79746200875279 LTS-010 NA NA NA NA LTS-010 chr12 133298772 133299101 330 * PGAM5 NA 0 NA 0.697 1 NA NA NA NA NA LTS-010 chr12 133299102 133812415 513314 * c(ZNF605, ZNF891, ZNF268, PGAM5, ANKLE2, GOLGA3, CHFR, ANHX, ZNF10, ZNF140) 0.339061095386046 69 0.0561490336626079 1.02911328928109 1543 0.265733043234669 3 2 1 -6.76206185570491 LTS-010 chr12 133812416 133812708 293 * ANHX NA 0 NA 0.828504361769459 7 0.0675929694850694 2 NA NA -5.76467453940471 LTS-010 chr13 19271620 19271676 57 * character(0) 0.028 1 NA 0.006 1 NA NA NA NA NA LTS-010 chr13 19271677 21562948 2291272 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00417, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, TUBA3C, ZMYM2, IFT88, ZMYM5, TPTE2) 0.163541728511071 18 0.0896104131437349 0.414308481112072 1296 0.101363683943576 1 1 0 -7.0876744251124 LTS-010 chr13 21562949 21723247 160299 * c(SAP18, LATS2) NA 0 NA 0.422595837461317 83 0.0693770780571033 1 NA NA -5.76444820751587 LTS-010 chr13 21723248 21727720 4473 * character(0) NA 0 NA 0.631 1 NA NA NA NA NA LTS-010 chr13 21727721 21727828 108 * SKA3 0.361 1 NA 0.568636082942273 3 0.253042157225497 2 2 0 -5.76449641160096 LTS-010 chr13 21727829 21742548 14720 * SKA3 0.293038412590012 15 0.16940503731196 0.57351861436529 74 0.273139849624318 3 2 1 -6.84084987015804 LTS-010 chr13 21742549 21746402 3854 * SKA3 NA 0 NA 0.319 1 NA NA NA NA NA LTS-010 chr13 21746403 21750538 4136 * c(SKA3, MRPL57) 0.198353735388008 2 0.149199530830362 0.318293378907105 10 0.123054459488472 1 1 0 -7.00066963856803 LTS-010 chr13 21750539 21751005 467 * c(SKA3, MRPL57) 0.101 1 NA 0.369653249956125 7 0.134091830652054 1 1 0 -5.76469449280184 LTS-010 chr13 21751006 22141052 390047 * c(MICU2, ZDHHC20, MIPEPP3, MRPL57) 0 1 NA 0.362805574517056 180 0.142847093918092 1 1 0 -6.02454742701697 LTS-010 chr13 22141053 22178032 36980 * MICU2 NA 0 NA 0.548 1 NA NA NA NA NA LTS-010 chr13 22178033 23411252 1233220 * c(LINC00424, MICU2, FGF9) 0.0819127043825746 4 0.036845397722556 0.449800328880255 137 0.115928290360017 1 1 0 -7.05919347557906 LTS-010 chr13 23411253 23777792 366540 * c(SGCG, BASP1P1) NA 0 NA 1.013 1 NA NA NA NA NA LTS-010 chr13 23777793 33017158 9239366 * c(LINC00426, PAN3-AS1, MIR2276, SACS-AS1, LINC00327, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, SPATA13-AS1, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SACS, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, LINC00544, NA NA NA NA NA NA NA NA NA LTS-010 ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, C1QTNF9B-AS1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, SGCG, TPTE2P1, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.0517344709873786 139 0.03481218805356 0.762020301822556 6256 0.447948687331754 2 2 0 -6.73835649220614 LTS-010 NA NA NA NA LTS-010 chr13 33017159 33095620 78462 * c(MINOS1P1, N4BP2L2, N4BP2L2-IT2) 0.033 1 NA 0.780481572885882 67 0.148389635567707 2 2 0 -5.76557331049353 LTS-010 chr13 33095621 33352155 256535 * c(N4BP2L2, PDS5B) NA 0 NA 0.760546275753342 249 0.197014446648227 2 NA NA -5.76443585564573 LTS-010 chr13 33352156 33590667 238512 * c(LINC00423, PDS5B, KL) NA 0 NA 1.28 1 NA NA NA NA NA LTS-010 chr13 33590668 40175554 6584887 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.0310600335680745 72 0.0169196527117824 1.16267150862961 2825 0.323992185569746 3 3 0 -6.94140219370147 LTS-010 chr13 40175555 40229697 54143 * LHFP NA 0 NA 0.679 1 NA NA NA NA NA LTS-010 chr13 40229698 53036036 12806339 * c(LINC00462, TPT1-AS1, MIR320D1, MIR4305, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, NA NA NA NA NA NA NA NA NA LTS-010 VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.036674794147839 134 0.0173723537781719 1.05737770436123 7127 0.848810675884092 3 3 0 -6.75493113821979 LTS-010 NA NA NA NA LTS-010 chr13 53036037 53036462 426 * CKAP2 NA 0 NA 1.329 1 NA NA NA NA NA LTS-010 chr13 53036463 114839373 61802911 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-010 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, RASA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, MZT1, ATP4B, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4 NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ) 0.035479234408087 256 0.0210653453451351 1.12753137668582 13537 0.285940273413859 3 3 0 -6.97473720537921 LTS-010 NA NA NA NA LTS-010 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.718 1 NA NA NA NA NA LTS-010 chr13 114897818 115064542 166725 * c(RASA3, UPF3A, CDC16) 0.0379093061269977 9 0.0136656503687164 0.980758171128129 147 0.231245446501799 3 3 0 -6.75834419743673 LTS-010 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.901471909472266 85 0.138505855431442 2 NA NA -5.78910227535765 LTS-010 chr14 19434116 20295510 861395 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.142 1 NA 2.60121728738153 103 0.480789956723514 7 7 0 -5.77146816563151 LTS-010 chr14 20295511 20404749 109239 * c(OR4N2, OR4K2, OR4K5, OR4K1) 0.257293637195323 4 0.0700826892558593 2.5270077199876 98 0.766182748571037 8 6 2 -6.73419593733861 LTS-010 chr14 20404750 20404767 18 * OR4K1 0.298 1 NA 0.628 1 NA NA NA NA NA LTS-010 chr14 20404768 20711269 306502 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4K1, OR4K15) 0.241893462949998 20 0.0249911036802678 1.55688638517646 260 0.340470948315516 4 3 1 -7.19925910145579 LTS-010 chr14 20711270 22534576 1823307 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4 NA NA NA NA NA NA NA NA NA LTS-010 ) 0.204465029604248 104 0.0356586890156545 1.78163040622936 3355 0.404635835945746 5 4 1 -6.77689777177692 LTS-010 NA NA NA NA LTS-010 chr14 22534577 22534579 3 * character(0) NA 0 NA 2.028 1 NA NA NA NA NA LTS-010 chr14 22534580 22991095 456516 * character(0) 0.193203311939161 14 0.0419054403874477 2.21519398805439 567 0.529242108423095 6 5 1 -6.79510162668947 LTS-010 chr14 22991096 22992443 1348 * character(0) NA 0 NA 1.657 1 NA NA NA NA NA LTS-010 chr14 22992444 23598976 606533 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.235637454234686 33 0.0603288023579069 1.71046833690548 1699 0.36842102110957 5 4 1 -6.81255339050048 LTS-010 chr14 23598977 23713651 114675 * SLC7A8 NA 0 NA 1.71666745395277 79 0.340157457287259 5 NA NA -5.765200312429 LTS-010 chr14 23713652 23727682 14031 * character(0) NA 0 NA 3.3 1 NA NA NA NA NA LTS-010 chr14 23727683 23729750 2068 * character(0) 0.134 1 NA 2.83834579155883 11 0.555170751783957 8 8 0 -5.76441094615995 LTS-010 chr14 23729751 24798245 1068495 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, DHRS2, EFS, IRF9, TM9SF1, DHRS4, DHRS1, CMTM5, LTB4R, MDP1, FITM1, NOP9, ADCY4, NGDN, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, MIR208A, MYH6, MYH7, NEDD8, NRL, EMC9, PCK2, GMPR2, SLC22A17, RNF31, DHRS4-AS1, LTB4R2, PSME1, PSME2, HOMEZ, RABGGTA, BCL2L2, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, REC8) 0.124796030913955 54 0.0273066610672983 2.84888112987124 3722 0.638312766570272 9 8 1 -6.75629798792425 LTS-010 chr14 24798246 24798301 56 * ADCY4 0.102 1 NA 0.176 1 NA NA NA NA NA LTS-010 chr14 24798302 25288687 490386 * c(RIPK3, CMA1, CTSG, ADCY4, KHNYN, STXBP6, GZMH, GZMB, NFATC4, SDR39U1, NYNRIN, CBLN3) 0.144037069026078 41 0.0192737658173095 2.60109191431242 977 0.680479191707392 8 7 1 -6.83280334251714 LTS-010 chr14 25288688 28102599 2813912 * c(MIR4307, LINC00645, STXBP6, NOVA1) NA 0 NA 2.8622326599833 157 0.665763790967475 8 NA NA -5.7663519097672 LTS-010 chr14 28733732 28733785 54 * character(0) 0.333 1 NA 0.271 1 NA NA NA NA NA LTS-010 chr14 28733786 30046695 1312910 * c(MIR548AI, FOXG1, LINC01551, PRKD1) 0.217489462550127 2 0.0332340187157678 1.72812558063055 137 0.45053424431746 5 4 1 -6.74255598716028 LTS-010 chr14 30046696 30047435 740 * c(MIR548AI, PRKD1) NA 0 NA 1.221 1 NA NA NA NA NA LTS-010 chr14 30047436 32438586 2391151 * c(LOC100506071, MIR548AI, AP4S1, DTD2, COCH, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, G2E3, PRKD1, MIR624, NUBPL) 0.245296599150398 31 0.0563919272801133 1.40189350699434 1399 0.405642296134993 4 3 1 -6.80883263246924 LTS-010 chr14 32438587 32586571 147985 * c(ARHGAP5, ARHGAP5-AS1) NA 0 NA 1.39932952921903 101 0.277704504967435 4 NA NA -5.76540595268618 LTS-010 chr14 32586572 32615385 28814 * ARHGAP5 NA 0 NA 0.739 1 NA NA NA NA NA LTS-010 chr14 32615386 32736681 121296 * ARHGAP5 0.462 1 NA 0.771771135769409 127 0.201219099451946 2 2 0 -5.76467347378932 LTS-010 chr14 32736682 36986297 4249616 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, AKAP6, KIAA0391) 0.445125404777898 48 0.0554256098473472 0.742908617201192 2108 0.192870664484475 2 1 1 -6.77907289520545 LTS-010 chr14 36986298 38725000 1738703 * c(SLC25A21-AS1, MIR4503, MIPOL1, CLEC14A, SFTA3, NKX2-8, FOXA1, PAX9, SSTR1, NKX2-1, SLC25A21) 0.456911767806753 25 0.0484501461986098 0.807996500281623 857 0.211496325577486 2 1 1 -6.8478304383244 LTS-010 chr14 38725001 39867378 1142378 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, FBXO33, LINC00639, MIA2, PNN, GEMIN2) 0.453791759585486 21 0.0292822065262784 0.676909105885571 672 0.180637405456394 2 1 1 -7.07323955614028 LTS-010 chr14 39867379 39867382 4 * FBXO33 NA 0 NA 1.102 1 NA NA NA NA NA LTS-010 chr14 39867383 48143920 8276538 * c(SNORD127, LINC00871, C14orf28, RPL10L, LRFN5, MDGA2, FKBP3, FAM179B, FBXO33, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB) 0.449856082125736 17 0.0412703603940991 0.787227151180984 1154 0.187378312909128 2 1 1 -6.88298011357897 LTS-010 chr14 48143921 48144042 122 * MDGA2 NA 0 NA 0.728 1 NA NA NA NA NA LTS-010 chr14 48144043 56043193 7899151 * c(KTN1-AS1, MIR4308, MIR548Y, LINC00648, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, ATG14, SAMD4A, KLHDC2, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, TBPL2, LGALS3, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, FBXO34, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, NA NA NA NA NA NA NA NA NA LTS-010 GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, NEMF, MAPK1IP1L, DLGAP5) 0.449512780839846 82 0.0565597602006376 0.725580578583732 5280 0.225126554306668 2 1 1 -6.95900410811957 LTS-010 NA NA NA NA LTS-010 chr14 56043194 68251244 12208051 * c(KTN1-AS1, OTX2-AS1, LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, EXOC5, WDR89, L3HYPDH, NAA30, GPHB5, RDH12, PPP1R36, SLC38A6, C14orf37, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, DAAM1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, TIMM9, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARG2, TOMM20L, KTN1, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, NA NA NA NA NA NA NA NA NA LTS-010 SIX6, OTX2, RDH11, DACT1, ATP6V1D, JKAMP, DHRS7, SIX4, PIGH, TMEM260, PPM1A, C14orf105, PPP2R5E, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, RHOJ, PLEKHH1, TRMT5, ARID4A, RTN1, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, SNAPC1, SPTB, CCDC175, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5, KIAA0586) 0.443959045244881 157 0.0662007035739261 0.753215679292887 8773 0.335669586756505 2 1 1 -6.74283192811498 LTS-010 NA NA NA NA LTS-010 chr14 68251245 68251738 494 * ZFYVE26 NA 0 NA 0.393 1 NA NA NA NA NA LTS-010 chr14 68251739 68963990 712252 * c(ZFYVE26, RAD51B) 0.10032770705638 2 0.0629325035256027 0.441324744015071 195 0.0961046196169065 1 1 0 -6.81372428250075 LTS-010 chr14 68963991 69012222 48232 * RAD51B NA 0 NA 0.892 1 NA NA NA NA NA LTS-010 chr14 69012223 75528495 6516273 * c(MED6, LOC100289511, SYNJ2BP-COX16, MIR4505, MIR4709, NPC2, ACOT2, ISCA2, ACOT4, ADAM21P1, LOC145474, PTGR2, FAM161B, ACTN1-AS1, DLST, ERH, PCNX1, TTC9, SIPA1L1, DCAF4, MLH3, PROX2, ADAM20P1, SNORD56B, VSX2, HEATR4, PLEKHD1, LTBP2, MAP3K9, ALDH6A1, COQ6, FCF1, COX16, PGF, ZFYVE1, EXD2, VRTN, SYNJ2BP, SLC39A9, YLPM1, PSEN1, CCDC177, GALNT16, ZNF410, ABCD4, RBM25, RAD51B, SMOC1, ACOT1, ACOT6, SRSF5, NA NA NA NA NA NA NA NA NA LTS-010 SYNDIG1L, SLC8A3, SLC10A1, ZFP36L1, BBOF1, DPF3, DNAL1, RPS6KL1, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, EIF2B2, PAPLN, ELMSAN1, LIN52, PNMA1, ENTPD5, RGS6, ACYP1, SUSD6, AREL1) 0.456078734565781 99 0.0536677709931436 0.751987520701655 6856 0.461371905624557 2 1 1 -6.76306256534718 LTS-010 NA NA NA NA LTS-010 chr14 75528496 75529716 1221 * ACYP1 NA 0 NA 0.5 1 NA NA NA NA NA LTS-010 chr14 75529717 75747154 217438 * c(TMED10, FOS, ZC2HC1C, NEK9, ACYP1) 0.453157618587204 24 0.0247462118313087 0.650823859086952 397 0.184460113943663 2 1 1 -6.89574276564479 LTS-010 chr14 75747155 75747228 74 * FOS NA 0 NA 0.813 1 NA NA NA NA NA LTS-010 chr14 75747229 91883183 16135955 * c(SNORA11B, MIR1260A, DIO2-AS1, LINC00911, BATF, AHSA1, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, TTC8, LRRC74A, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, FOXN3-AS1, LINC00642, CCDC88C, KCNK10, NRDE2, FLVCR2, GPATCH2L, TDP1, SPATA7, KCNK13, PSMC1, ADCK1, TMEM63C, NA NA NA NA NA NA NA NA NA LTS-010 NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, TSHR, LINC01220, ZC3H14, C14orf159, CALM1, GPR68, SLIRP, GPR65, STON2, CIPC, ALKBH1, EFCAB11, RPS6KA5, NRXN3, SPTLC2) 0.456381208701169 163 0.0352339311217885 0.767337346456113 7208 0.234152099165172 2 1 1 -6.80454354549595 LTS-010 NA NA NA NA LTS-010 chr14 91883184 91883368 185 * CCDC88C NA 0 NA 0.63 1 NA NA NA NA NA LTS-010 chr14 91883369 92601757 718389 * c(FBLN5, TC2N, ATXN3, CCDC88C, NDUFB1, CPSF2, PPP4R3A, CATSPERB, TRIP11) 0.433255415770306 18 0.0508938405559646 0.682777462668148 940 0.182162295485482 2 1 1 -6.91793035955593 LTS-010 chr14 92601758 92601837 80 * CPSF2 NA 0 NA 0.719 1 NA NA NA NA NA LTS-010 chr14 92601838 106066706 13464869 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, NA NA NA NA NA NA NA NA NA LTS-010 DYNC1H1, LINC00638, EIF5, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.448606447982441 278 0.0457357828919545 0.776328053108328 13602 0.21618840536003 2 1 1 -6.79267672822662 LTS-010 NA NA NA NA LTS-010 chr14 106066707 106091504 24798 * character(0) 0.383 1 NA 0.864667328413283 31 0.114732273679449 2 2 0 -5.78223314328125 LTS-010 chr14 106091505 106471742 380238 * c(ELK2AP, ADAM6, FAM30A) 0.410051847216599 16 0.0363505502021634 0.779908337563738 365 0.162452362104508 2 1 1 -7.24028914422229 LTS-010 chr14 106471743 106494185 22443 * character(0) NA 0 NA 0.476 1 NA NA NA NA NA LTS-010 chr14 106494186 106725656 231471 * character(0) 0.441257740781074 7 0.0458330303020285 0.54729970954254 82 0.184127237682886 2 1 1 -7.15619920591155 LTS-010 chr14 106725657 106733195 7539 * character(0) NA 0 NA 0.95 1 NA NA NA NA NA LTS-010 chr14 106733196 107178965 445770 * c(LINC00226, LINC00221) 0.361156239364519 26 0.105248285204375 0.867580910472186 193 0.347889704337239 3 2 1 -6.86930652956211 LTS-010 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.715462770939376 53 0.158724389383598 2 NA NA -5.77444753921573 LTS-010 chr15 20169987 20446043 276057 * character(0) 0.432 1 NA 0.605941179668386 24 0.148259540348498 2 2 0 -6.13807228304021 LTS-010 chr15 20446044 22466126 2020083 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.38915581855037 24 0.112865629676704 0.638084770661468 245 0.335482685472126 2 1 1 -7.19885185462445 LTS-010 chr15 22466127 22489959 23833 * character(0) NA 0 NA 0.608834863500454 17 0.14445404317026 2 NA NA -5.79891331859703 LTS-010 chr15 22489960 22928537 438578 * c(GOLGA8DP, TUBGCP5, CYFIP1, GOLGA6L1, REREP3) 0.069 1 NA 0.453681978930792 162 0.116238166060625 1 1 0 -5.85730151943482 LTS-010 chr15 22928538 28511189 5582652 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-010 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.148970181645238 47 0.084419928508171 0.449951177161469 2352 0.124629061123721 1 1 0 -7.65356310552495 LTS-010 NA NA NA NA LTS-010 chr15 28511190 28513639 2450 * HERC2 NA 0 NA 0.385 1 NA NA NA NA NA LTS-010 chr15 28513640 45117968 16604329 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, LOC100289656, MIR1282, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, MIR4510, TMCO5B, LOC100996255, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CHRNA7, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, PATL2, NA NA NA NA NA NA NA NA NA LTS-010 EPB42, BAHD1, FAN1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, FAM189A1, CCNDBP1, LPCAT4, PLA2G4F, LRRC57, NUTM1, HYPK, GANC, TMEM87A, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283710, FAM98B, PLA2G4D, PDIA3, EHD4, APBA2, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, LTK, MIR211, MAP1A, MEIS2, MFAP1, TRPM1, HERC2P9, WHAMMP2, GOLGA8B, EIF2AK4, CATSPER2P1, NDUFAF1, NUSAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 EMC4, SPTBN5, CTDSPL2, KLF13, PLCB2, DLL4, INO80, CKMT1A, PPP1R14D, MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, NSMCE3, B2M, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, RAD51, SERINC4, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, EIF3J-AS1, PDCD6IPP2, GOLGA8T, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, GOLGA8O, GOLGA6L7P, PIN4P1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 WDR76, TMEM62, SPG11, ELL3, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, HERC2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.10010927383893 282 0.0644796408817236 0.419487632703425 16012 0.132486438333199 1 1 0 -6.77644061471361 LTS-010 NA NA NA NA LTS-010 chr15 45117969 45118037 69 * character(0) 0.128 1 NA 0.153 1 NA NA NA NA NA LTS-010 chr15 45118038 45118261 224 * character(0) 0.190770502634216 8 0.0343095155480642 0.202185706468649 15 0.112702642889533 11 9 2 -6.82453306538538 LTS-010 chr15 45118262 45119384 1123 * character(0) NA 0 NA 0.201612799330675 26 0.15471420798959 1 NA NA -5.77983167933514 LTS-010 chr15 45119385 45120601 1217 * character(0) NA 0 NA 0.518 1 NA NA NA NA NA LTS-010 chr15 45120602 45365724 245123 * c(TERB2, SORD) 0.35 1 NA 0.421618219808607 118 0.13741973333111 1 1 0 -5.76451654433636 LTS-010 chr15 45365725 45366583 859 * SORD 0.330703529917881 16 0.11656986460202 0.674742001320686 34 0.450095608777733 6 4 2 -6.74001604764676 LTS-010 chr15 45366584 45443012 76429 * c(DUOXA2, DUOX2, DUOX1, SORD, DUOXA1) 0.113 1 NA 0.461926162150684 403 0.0971072726506076 1 1 0 -5.80150421646505 LTS-010 chr15 45443013 48787484 3344472 * c(MIR147B, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, MYEF2, DUOX1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, SLC28A2) 0.0923191359461081 39 0.0435623399611177 0.428785968091204 1964 0.117898085462992 1 1 0 -6.77247912648255 LTS-010 chr15 48787485 48787662 178 * FBN1 NA 0 NA 0.341 1 NA NA NA NA NA LTS-010 chr15 48787663 51233981 2446319 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.0970612121676453 34 0.0435768422039802 0.3977507837107 2242 0.107094471812355 1 1 0 -7.18949675000406 LTS-010 chr15 51233982 51240244 6263 * c(DCAF13P3, AP4E1) NA 0 NA 0.611 1 NA NA NA NA NA LTS-010 chr15 51240245 56471449 5231205 * c(LOC100129973, BCL2L10, MIR1266, DYX1C1-CCPG1, MIR4713, GNB5, ARPP19, LEO1, C15orf65, CYP19A1, DYX1C1, DMXL2, AP4E1, LYSMD2, WDR72, PYGO1, PRTG, SCG3, TMOD3, TMOD2, ONECUT1, GLDN, TNFAIP8L3, UNC13C, MYO5A, NEDD4, RSL24D1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.10570512978259 47 0.0444371730612584 0.423557692177727 3915 0.115425879824444 1 1 0 -6.74640419620825 LTS-010 chr15 56471450 56922570 451121 * c(TEX9, ZNF280D, MNS1, RFX7) NA 0 NA 0.420110156262536 176 0.112229237659864 1 NA NA -5.76554872804888 LTS-010 chr15 56922571 57841283 918713 * c(LOC145783, LINC00926, ZNF280D, TCF12, CGNL1) 0.485 1 NA 0.768345378733346 503 0.176962646070527 2 2 0 -5.76544158795221 LTS-010 chr15 57841284 68483853 10642570 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, IQCH-AS1, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, C15orf61, MGC15885, LCTL, ZNF609, DAPK2, FOXB1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, MYO1E, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, VPS13C, NA NA NA NA NA NA NA NA NA LTS-010 DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, BNIP2, SNX1, HSP90AB4P, SCARNA14, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, CALML4, SLC24A1, GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.449976426926984 168 0.0438298283885822 0.740678994846569 9572 0.187598569965219 2 1 1 -6.89047447648695 LTS-010 NA NA NA NA LTS-010 chr15 68483854 69740559 1256706 * c(MIR548H4, MIR4312, FEM1B, CORO2B, ITGA11, SPESP1, GLCE, EWSAT1, PAQR5, CLN6, NOX5, ANP32A-IT1, ANP32A, CALML4, KIF23) 0.459362158446752 18 0.0411013413581346 0.803025831708468 1286 0.1927318950468 2 1 1 -6.86166363209905 LTS-010 chr15 69740560 69857953 117394 * c(DRAIC, RPLP1, KIF23) NA 0 NA 0.834967766672829 43 0.323241824111497 2 NA NA -5.76996402809081 LTS-010 chr15 69857954 69857981 28 * DRAIC NA 0 NA 1.051 1 NA NA NA NA NA LTS-010 chr15 69857982 70340511 482530 * c(DRAIC, LINC00593) 0.3 1 NA 0.959762537733979 11 0.2628354134158 3 3 0 -5.84318647346247 LTS-010 chr15 70340512 102516492 32175981 * c(NR2E3, FAM138E, DNM1P35, NA, UBE2Q2P2, LINC00930, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR1469, MIR3175, MIR4313, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, MIR4714, SPATA8-AS1, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, AP3S2, HMG20A, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, CHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, NA NA NA NA NA NA NA NA NA LTS-010 CHRNB4, CLK3, C15orf40, SENP8, TARSL2, HIGD2B, LRRC28, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, ASB7, CSK, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, NRG4, LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ADAMTS17, ACAN, SCAMP5, DNM1P46, CT62, GRAMD2, CERS3, ETFA, FAH, ALDH1A3, FES, CHSY1, TBC1D2B, MESDC2, ACSBG1, KIAA1024, SYNM, TMED3, SEC11A, GABARAPL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, FBXO22, VPS33B, MRPL46, OR4F4, NPTN, SLCO3A1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, FAM169B, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ZNF774, IGF1R, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, ZNF710, HDDC3, WASH3P, C15orf59, GOLGA2P7, UBE2Q2P1, SPATA41, ANKRD34C, GDPGP1, OR4F6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 OR4F15, OR4F13P, ADAMTS7P1, ST20, FAM174B, LINC01197, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2A2, MAN2C1, MEF2A, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, MYO9A, NEO1, NMB, NTRK3, SCAPER, FURIN, PCSK6, HDGFRP3, NGRN, RHCG, PDE8A, PKM, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, LRRC49, RPP25, COMMD4, ZSCAN2, DET1, UACA, LINS1, FANCI, IMP3, LARP6, DNAJA4, MCTP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SELENOS, GOLGA6B, MESP1, UNC45A, PSMA4, C15orf39, THAP10, RGMA, WDR93, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, CELF6, BLM, STRA6, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, ISL2, EFTUD1P1, TTC23, MRPS11, GOLGA6C, GOLGA6D, SNRPA1, SCARNA15, FBXO22-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MIR549A, MIR629, MIR630, MIR631, NR2F2, TLE3, HSP90B2P, AGBL1-AS1, ASB9P1, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LRRK1, LMAN1L, PEAK1, THSD4, HEXA-AS1, CCDC33, EDC3, TM2D3, WDR61, CD276, STARD5, AP3B2, ST8SIA2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PEX11A, IQGAP1, TICRR, PSTPIP1, PRC1, RCCD1, LOC91450, SLC28A1, ARRDC4, LINC00923, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SV2B, ARNT2) 0.345410737453271 514 0.0589500441195873 1.10537830512574 23134 0.346920964731548 3 2 1 -6.73475855074944 LTS-010 NA NA NA NA LTS-010 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.732 1 NA NA NA NA NA LTS-010 chr16 81704 81779 76 * character(0) 0.271 1 NA 1.091 1 NA NA NA NA NA LTS-010 chr16 81780 475787 394008 * c(LOC100134368, MRPL28, DECR2, HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, NME4, POLR3K, LUC7L, TMEM8A, RHBDF1, PDIA2, SNRNP25, NPRL3, AXIN1, FAM234A, RGS11, RAB11FIP3) 0.075555868954345 51 0.0547441177787399 0.707750195174542 1122 0.233458895023384 2 2 0 -6.84032479190705 LTS-010 chr16 475788 476297 510 * RAB11FIP3 NA 0 NA 0.929 1 NA NA NA NA NA LTS-010 chr16 476298 1036860 560563 * c(MIR3176, MIR5587, MSLN, STUB1, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, NHLRC4, SOX8, JMJD8, PRR25, GNG13, RAB40C, CHTF18, NARFL, LINC00235, LMF1, FAM173A, CAPN15, MIR662, METRN, WDR24, HAGHL, METTL26, MCRIP2, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.0777582317586018 68 0.0670631950079234 0.776787040014764 2171 0.217253284783568 2 2 0 -6.80372645538061 LTS-010 chr16 1036861 1115904 79044 * c(SSTR5-AS1, SOX8) 0.053 1 NA 0.777312631723248 17 0.194361454511948 2 2 0 -5.76487574455048 LTS-010 chr16 1115905 1484392 368488 * c(TSR3, SSTR5-AS1, TPSD1, TPSG1, C16orf91, C1QTNF8, TPSB2, CCDC154, UNKL, SSTR5, TPSAB1, UBE2I, GNPTG, CACNA1H, BAIAP3) 0.0516950819306924 46 0.0505203264205855 0.772718036865517 1050 0.229149072756261 2 2 0 -6.73636442181438 LTS-010 chr16 1484393 1486462 2070 * CCDC154 0.063 1 NA 0.650081273284235 21 0.216200480154526 2 2 0 -5.76508559004724 LTS-010 chr16 1486463 4388139 2901677 * c(MIR940, LOC100128770, SRRM2-AS1, MIR1225, MIR3178, MIR3177, MTRNR2L4, MIR3677, MIR3180-5, ERVK13-1, LINC01569, MIR4717, MIR4516, NUBP2, ZNF263, TRAP1, TBL3, RNPS1, PRSS21, FLYWCH2, ADCY9, CLCN7, NOXO1, ZG16B, PRSS30P, PAQR4, CREBBP, RNF151, ZNF597, BICDL2, ECI1, DNASE1, DNASE1L2, E4F1, EME2, NLRC3, ABCA3, CLUAP1, MAPK8IP3, SRRM2, MEIOB, RAB26, PRSS33, OR1F2P, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NA NA NA NA NA NA NA NA NA LTS-010 LINC00514, LINC00921, HAGH, IGFALS, PRSS41, PTX4, MEFV, NDUFB10, NME3, NTHL1, NTN3, OR1F1, OR2C1, AMDHD2, TNFRSF12A, PDPK1, MSRB1, ATP6V0C, PKD1, KCTD5, ZSCAN32, HCFC1R1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, SRL, PRSS22, MLST8, MMP25, FLJ42627, CCDC154, C16orf90, HS3ST6, LINC00254, ABCA17P, LOC652276, MRPS34, SNORA78, TCEB2, TFAP4, TSC2, SNHG9, CEMP1, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 THOC6, KREMEN2, TMEM204, NAA60, C16orf59, ZNF205-AS1, FAHD1, PRSS27, TRAF7, FLYWCH1, SLX4, GLIS2, ZSCAN10, CCNF, CLDN6, CLDN9, ZNF598, HN1L, SPSB3, PKMYT1, TIGD7, SYNGR3, IL32, SLC9A3R2, IFT140, TELO2) 0.0519471229775234 183 0.0236261795687757 0.753782574311284 7122 0.420519265684405 2 2 0 -6.74441252541653 LTS-010 NA NA NA NA LTS-010 chr16 4388140 4414727 26588 * c(CORO7-PAM16, PAM16, CORO7, GLIS2) 0.048 1 NA 0.777964451043611 143 0.148958350786003 2 2 0 -5.76470049373937 LTS-010 chr16 4414728 12031379 7616652 * c(MIR548X, NAGPA-AS1, CORO7-PAM16, VASN, RMI2, ANKS3, UBALD1, SEPT12, TEKT5, C16orf89, C16orf71, ABAT, EEF2KMT, EMP2, CLEC16A, MGRN1, CARHSP1, TMEM186, ZNF500, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, BCAR4, CIITA, SMIM22, NUBP1, TXNDC11, NAGPA, PMM2, RBFOX1, PPL, ALG1, PRM1, PRM2, NMRAL1, PRM3, TNP2, TVP23A, USP7, METTL22, CORO7, ROGDI, ATF7IP2, SNN, NA NA NA NA NA NA NA NA NA LTS-010 NUDT16L1, GLYR1, SOCS1, DNAJA3, LITAF, SEC14L5) 0.0548504326653647 91 0.0251544096003926 0.77417975213159 4290 0.193482772180614 2 2 0 -6.76120222651099 LTS-010 NA NA NA NA LTS-010 chr16 12031380 12136954 105575 * c(TNFRSF17, SNX29) 0.156 1 NA 0.789487112010603 45 0.144845623149112 2 2 0 -5.76806427493505 LTS-010 chr16 12136955 12621176 484222 * SNX29 0.35803458016327 9 0.170096132949707 0.795733163996342 163 0.204713442035437 2 1 1 -6.89773554806279 LTS-010 chr16 12621177 12662328 41152 * SNX29 0.108 1 NA 0.394683131619777 5 0.251241517269738 1 1 0 -5.76631052649715 LTS-010 chr16 12662329 13005399 343071 * c(MIR4718, CPPED1, SHISA9, SNX29) 0.038567812781832 9 0.0285267905271129 0.869371773935396 153 0.328916056576479 3 3 0 -6.83815204628624 LTS-010 chr16 13005400 14341046 1335647 * c(ERCC4, MKL2, SHISA9) 0.119 1 NA 0.75346769780182 193 0.168288160310495 2 2 0 -5.76841294728007 LTS-010 chr16 14341047 15130351 789305 * c(MIR365A, PDXDC1, NOMO1, PARN, BFAR, MIR193B, MKL2, NPIPA3, ABCC6P2, PLA2G10, NPIPA1) 0.19372673731556 9 0.201784194403603 0.840049614526411 421 0.25137328648764 2 2 0 -7.07348840504829 LTS-010 chr16 15130352 15130594 243 * PDXDC1 0.046 1 NA 0.989015954314617 5 0.242104935926552 3 3 0 -5.76443901915684 LTS-010 chr16 15130595 28608421 13477827 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-010 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.0552998467485607 163 0.0543362250977487 0.778083555570849 9631 0.208817508182225 2 2 0 -6.80814764019886 LTS-010 NA NA NA NA LTS-010 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.302 1 NA NA NA NA NA LTS-010 chr16 28616944 28712734 95791 * SULT1A1 0.042 1 NA 0.436595754483106 76 0.215923054846015 1 1 0 -5.76561075410486 LTS-010 chr16 28712735 28734495 21761 * character(0) NA 0 NA 0.856 1 NA NA NA NA NA LTS-010 chr16 28734496 33408626 4674131 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, NA NA NA NA NA NA NA NA NA LTS-010 ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.0585345096001044 107 0.0481989060474624 0.7523711373445 6773 0.180217034875133 2 2 0 -6.75159044778645 LTS-010 NA NA NA NA LTS-010 chr16 33408627 33424787 16161 * character(0) 0.487 1 NA 0.673686801807584 5 0.0867945850845547 2 2 0 -5.78407783744879 LTS-010 chr16 33424788 33961334 536547 * LINC00273 0.217204795297371 13 0.14381260063904 0.656814293849068 109 0.199309756923471 2 2 0 -7.58811524809539 LTS-010 chr16 33961335 33961368 34 * LINC00273 NA 0 NA 1.12037196789959 2 0.0742462120245875 3 NA NA -5.76441113913296 LTS-010 chr16 33961369 33961370 2 * LINC00273 0.37 1 NA 0.293 1 NA NA NA NA NA LTS-010 chr16 33961371 33962376 1006 * LINC00273 0.327151851349154 69 0.0940296270264765 0.317068571978951 87 0.278896037019861 3 2 1 -6.76869612738504 LTS-010 chr16 33962377 33962378 2 * LINC00273 NA 0 NA 0.928 1 NA NA NA NA NA LTS-010 chr16 33962379 33965652 3274 * LINC00273 0.246497288332734 5 0.162907335623661 0.605283845636155 19 0.237681921707211 4 3 1 -6.7664380202331 LTS-010 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.820644685334071 115 0.198356317854895 2 NA NA -5.82289239658459 LTS-010 chr16 46508169 46602819 94651 * ANKRD26P1 0.029 1 NA 0.803506938338793 95 0.267335108936938 2 2 0 -5.76659135092058 LTS-010 chr16 46602820 55731946 9129127 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, MMP2, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.0548553291846724 67 0.0492667078557097 0.778314188763878 4508 0.18519923188945 2 2 0 -6.79970794512835 LTS-010 chr16 55731947 55854412 122466 * c(CES1, CES1P2, CES1P1, SLC6A2) 0.418 1 NA 0.858215105109829 93 0.253854461567616 2 2 0 -5.78031750377333 LTS-010 chr16 55854413 55880534 26122 * c(CES1, CES5A) 0.349231901887948 9 0.129226545260639 0.781911986427154 47 0.220751938001368 3 2 1 -6.77102766302584 LTS-010 chr16 55880535 55880639 105 * CES5A 0.062 1 NA 0.525976712684333 4 0.355588245025057 1 1 0 -5.76443347182513 LTS-010 chr16 55880640 60393310 4512671 * c(MIR3935, KATNB1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ARL2BP, DKFZP434H168, AMFR, GNAO1, GOT2, LOC283856, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, POLR2C, SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, MT1IP, APOOP5, GINS3, NDRG4, NA NA NA NA NA NA NA NA NA LTS-010 SLC12A3, SNORA46, SNORA50A, USB1, SETD6, FAM192A, NLRC5, DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.0554743795153016 62 0.0350654785257686 0.773115310592802 4287 0.202250709987101 2 2 0 -6.74579383163372 LTS-010 NA NA NA NA LTS-010 chr16 61681645 62055551 373907 * CDH8 NA 0 NA 0.0902967221306829 105 0.0302550422643496 0 NA NA -6.86843851483092 LTS-010 chr16 64294499 64980818 686320 * CDH11 0.068 1 NA 0.429188702859464 79 0.0793231775988689 1 1 0 -5.77739331492712 LTS-010 chr16 64980819 65022114 41296 * CDH11 0.1 1 NA 0.450061433314264 63 0.0776814889306213 1 1 0 -5.77994379907112 LTS-010 chr16 65022115 70796515 5774401 * c(CDH3, SNORD111B, VAC14-AS1, CDH5, MIR1538, MIR1972-1, LINC00920, SMG1P7, LOC100506083, CKLF-CMTM1, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, TMEM208, NA NA NA NA NA NA NA NA NA LTS-010 FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.107150418230829 74 0.0782336055549917 0.428917761514556 8234 0.103483764797683 1 1 0 -6.7974830069361 LTS-010 NA NA NA NA LTS-010 chr16 70796516 70874094 77579 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.452230584311678 131 0.116111635593255 1 NA NA -5.77959173593237 LTS-010 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.931 1 NA NA NA NA NA LTS-010 chr16 70883627 70884524 898 * HYDIN 0.278 1 NA 0.837584475458261 11 0.204942918882307 2 2 0 -5.76452320680904 LTS-010 chr16 70884525 71167220 282696 * HYDIN 0.24619948779852 84 0.0557177235357555 0.814463265242879 543 0.274523464614353 4 3 1 -7.45314196128085 LTS-010 chr16 71167221 71196616 29396 * HYDIN NA 0 NA 0.839214082018633 15 0.0878747485263624 2 NA NA -5.785334676414 LTS-010 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.536 1 NA NA NA NA NA LTS-010 chr16 71209484 71318001 108518 * c(HYDIN, CMTR2) 0.092 1 NA 0.436530080980644 67 0.085803360330773 1 1 0 -5.77293025796184 LTS-010 chr16 71318002 90141355 18823354 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, AFG3L1P, NA NA NA NA NA NA NA NA NA LTS-010 DHODH, DPEP1, SNAI3-AS1, LINC00311, LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, GAS8-AS1, ZNF19, ZNF23, CA5A, DBNDD1, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.0979927721573788 369 0.0562832981447696 0.420508803722889 12891 0.181182764586622 1 1 0 -6.74702520166556 LTS-010 NA NA NA NA LTS-010 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.394642318949606 20 0.261262300138547 1 NA NA -5.76526206269293 LTS-010 chr17 6004 62484 56481 * c(DOC2B, RPH3AL) 0.042 1 NA 0.740244963262952 35 0.17247778081234 2 2 0 -5.76540821837178 LTS-010 chr17 62485 2606715 2544231 * c(DBIL5P, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, MIR22HG, SCARF1, RPH3AL, SGSM2) 0.0528603593155643 124 0.0318627235143334 0.744749673314977 3378 0.367495276065695 2 2 0 -6.74202134125181 LTS-010 chr17 2606716 2883500 276785 * c(MIR1253, RAP1GAP2, CLUH) 0.096 1 NA 0.721116864800322 49 0.192688658767679 2 2 0 -5.77829594196845 LTS-010 chr17 2883501 3143983 260483 * c(RAP1GAP2, OR1A2, OR1D2, OR1D4, OR1A1, OR1D5, OR1G1) 0.38878409274286 9 0.174000718389322 0.795719240434332 191 0.193160215882372 2 1 1 -6.80213513049579 LTS-010 chr17 3143984 3195503 51520 * c(OR3A1, OR3A2, OR1D4) 0.064 1 NA 0.691235738274472 39 0.144588638882615 2 2 0 -5.77860677188407 LTS-010 chr17 3195504 4936972 1741469 * c(C17orf107, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ENO3, CAMTA2, ZZEF1, SHPK, ALOX15, RNF167, PELP1, GP1BA, VMO1, TAX1BP3, SMTNL2, ITGAE, GLTPD2, INCA1, OR3A4P, MED11, ARRB2, ASPA, ATP2A3, OR3A1, P2RX1, P2RX5, MINK1, ANKFY1, PFN1, PLD2, SLC52A1, NCBP3, PSMB6, CXCL16, UBE2G1, TRPV1, EMC6, OR1E1, OR1E2, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, NA NA NA NA NA NA NA NA NA LTS-010 SPATA22, TM4SF5, SPAG7) 0.0552787459446678 109 0.0528371236706217 0.748503209685464 3937 0.183403970465166 2 2 0 -6.74366704999785 LTS-010 NA NA NA NA LTS-010 chr17 4936973 4937982 1010 * SLC52A1 0.054 1 NA 0.822942816135298 23 0.104659149382207 2 2 0 -5.76473190607082 LTS-010 chr17 4937983 5085893 147911 * c(ZFP3, SLC52A1, ZNF232, ZNF594, USP6) 0.227114061052091 9 0.110078381165422 0.691516543316598 233 0.151037681994495 2 2 0 -7.96398608089131 LTS-010 chr17 5085894 5087040 1147 * ZNF594 0.062 1 NA 0.697743685338944 25 0.147212714577693 2 2 0 -5.76465993156183 LTS-010 chr17 5087041 8633553 3546513 * c(LOC100128288, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, CLEC10A, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, KRBA2, CLDN7, DNAH2, CCDC42, ODF4, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, FGF11, NLRP1, ARHGEF15, KDM6B, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15B, NA NA NA NA NA NA NA NA NA LTS-010 TMEM256, BCL6B, SENP3, SNORA67, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, LOC339166, TMEM95, ACADVL, SPEM1, SCIMP, SLC25A35, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, MYH10, ATP1B2, NUP88, MED31, DERL2, YBX2, PER1, PFAS, POLR2A, FAM64A, XAF1, BORCS6, WRAP53, DHX33, PLSCR3, MIR497, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 VAMP2, C1QBP, TP53, LOC728392, MIS12, PHF23, CTC1, NDEL1, PITPNM3, TEKT1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, RABEP1, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, CD68, ACAP1, KIAA0753) 0.0529625505617899 154 0.0492452775416708 0.767838849517098 7568 0.190509768275629 2 2 0 -6.73693790828289 LTS-010 NA NA NA NA LTS-010 chr17 8633554 13505233 4871680 * c(MIR744, LINC00675, MAGOH2P, TMEM220-AS1, USP43, CFAP52, CCDC42, PIK3R6, MFSD6L, DNAH9, DHRS7C, PIK3R5, LINC00670, SPDYE4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, GAS7, MYH13, GLP2R, MYOCD, NTN1, STX8, ARHGAP44, HS3ST3A1) 0.0499002634925421 66 0.027286804447749 0.809218850365177 3450 0.190444978241307 2 2 0 -7.02644463157625 LTS-010 chr17 13505234 13927975 422742 * c(CDRT15P1, HS3ST3A1) NA 0 NA 0.618 1 NA NA NA NA NA LTS-010 chr17 13927976 15586889 1658914 * c(TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, COX10, CDRT15, TVP23C, CDRT4, CDRT1, PMP22, TEKT3, MGC12916, CDRT7, CDRT15P1, HS3ST3B1) 0.0550859724650897 25 0.0278081522818999 0.754207377436758 839 0.205476120641699 2 2 0 -6.73584193662885 LTS-010 chr17 15586890 15603021 16132 * c(TRIM16, ZNF286A) 0.469 1 NA 0.754364925480003 19 0.195974174811332 2 2 0 -5.76443902752167 LTS-010 chr17 15603022 15973844 370823 * c(ZSWIM7, ADORA2B, TBC1D26, MEIS3P1, TTC19, ZNF286A, CDRT15P2, NCOR1) 0.168745737629169 9 0.117895080474123 0.722511271459652 522 0.256331651014263 2 2 0 -7.25491492060577 LTS-010 chr17 15973845 15994888 21044 * NCOR1 0.052 1 NA 0.734464668886324 51 0.162483536420904 2 2 0 -5.76508049240513 LTS-010 chr17 15994889 16649035 654147 * c(MIR1288, LRRC75A-AS1, USP32P1, CENPV, SNORD49A, LRRC75A, TRPV2, ZNF287, ZNF624, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.0585570375303587 5 0.0200823305420462 0.76932782407713 590 0.18308957215893 2 2 0 -6.75259369018428 LTS-010 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 1.24 1 NA NA NA NA NA LTS-010 chr17 16664882 16842510 177629 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) 0.11 1 NA 1.24469402269929 46 0.508677514272619 3 3 0 -5.77052957859968 LTS-010 chr17 16842511 16842802 292 * TNFRSF13B NA 0 NA 0.738 1 NA NA NA NA NA LTS-010 chr17 16842803 18221134 1378332 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.048738698564425 36 0.0250228308448917 0.788226012010274 2516 0.17147752277745 2 2 0 -6.80135936512008 LTS-010 chr17 18221135 18226177 5043 * SMCR8 0.062 1 NA 0.778749946130099 11 0.0726537241740824 2 2 0 -5.7646654292869 LTS-010 chr17 18226178 18315385 89208 * c(SMCR8, EVPLL, SHMT1) 0.238279065362594 3 0.216619482041667 0.831007581647164 152 0.23703996694785 3 2 1 -6.95233090938279 LTS-010 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.008 1 NA NA NA NA NA LTS-010 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.196754168102138 65 0.214891656511977 1 NA NA -6.30590957121799 LTS-010 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.969 1 NA NA NA NA NA LTS-010 chr17 18483256 18565423 82168 * c(TBC1D28, CCDC144B, ZNF286B) 0.230565088769014 6 0.176479366121557 0.801808909509293 157 0.445593913209258 4 3 1 -6.83936197593636 LTS-010 chr17 18565424 18574794 9371 * c(FOXO3B, ZNF286B) 0.045 1 NA 0.763261361184335 43 0.140563027011264 2 2 0 -5.76441042881167 LTS-010 chr17 18574795 20924523 2349729 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, SPECC1, ULK2) 0.0650665565312895 55 0.0668361079048243 0.769190476267 2281 0.197474628837896 2 2 0 -6.74934516300908 LTS-010 chr17 20924524 21191342 266819 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) NA 0 NA 0.746666791431553 110 0.170717468482395 2 NA NA -5.76682345251335 LTS-010 chr17 21191343 21194769 3427 * MAP2K3 0.38 1 NA 0.460725613295673 3 0.327536766384071 1 1 0 -5.76454858956889 LTS-010 chr17 21194770 21318663 123894 * c(KCNJ12, MAP2K3) 0.384014891966018 84 0.0832721002799006 0.56866358362239 168 0.270479987065945 2 1 1 -7.12272824929516 LTS-010 chr17 21318664 21318698 35 * KCNJ12 0.326 1 NA 0.386 1 NA NA NA NA NA LTS-010 chr17 21318699 21320350 1652 * KCNJ12 0.307829428065685 38 0.0745535026076365 0.573790546330388 85 0.231889290087194 10 7 3 -6.7932241376639 LTS-010 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 0.828 1 NA NA NA NA NA LTS-010 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.341323249386016 11 0.134511912280863 0.774574409160027 207 0.184413209751796 2 1 1 -7.07170954880143 LTS-010 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.79 1 NA NA NA NA NA LTS-010 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.104 1 NA 0.726476297666009 17 0.240353523328597 2 2 0 -5.76464226444598 LTS-010 chr17 25630389 27975077 2344689 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-010 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.0506987972811489 55 0.0226237264090821 0.785903717817591 4182 0.195816144428697 2 2 0 -6.78815545597193 LTS-010 NA NA NA NA LTS-010 chr17 27975078 27975182 105 * SSH2 NA 0 NA 0.577 1 NA NA NA NA NA LTS-010 chr17 27975183 33428167 5452985 * c(MIR365B, MIR3184, AA06, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, TBC1D29, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, PSMD11, RAD51D, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, NA NA NA NA NA NA NA NA NA LTS-010 MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, GOSR1) 0.0529535583103175 71 0.0294308861975688 0.741732854195109 4271 0.191759800925519 2 2 0 -6.80296361437562 LTS-010 NA NA NA NA LTS-010 chr17 33428168 33477242 49075 * c(RAD51L3-RFFL, UNC45B, NLE1, FNDC8, RAD51D) 0.028 1 NA 0.744492771319444 207 0.133580952528707 2 2 0 -5.76535101973406 LTS-010 chr17 33477243 33875262 398020 * c(SLFN12L, SLFN13, SLC35G3, UNC45B, SLFN5, SLFN14, SLFN12, SLFN11) 0.211451205114472 9 0.161420258951595 0.73853743694073 639 0.18063926337485 2 2 0 -7.25689661852297 LTS-010 chr17 33875263 33881631 6369 * SLFN14 0.03 1 NA 0.772586852697634 35 0.13813823912749 2 2 0 -5.76444481474479 LTS-010 chr17 33881632 34433730 552099 * c(C17orf50, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, PEX12, LYZL6, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, RASL10B) 0.0404273033710683 9 0.0205851888502389 0.762110179805542 850 0.256586114690282 2 2 0 -7.02007253935195 LTS-010 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.037 1 NA NA NA NA NA LTS-010 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.415184510515069 39 0.421238992495852 1 NA NA -5.76453619652974 LTS-010 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.713 1 NA NA NA NA NA LTS-010 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0452154297303258 11 0.0236277956498851 0.749851766658635 1532 0.184741432014305 2 2 0 -6.84128155048441 LTS-010 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.199 1 NA NA NA NA NA LTS-010 chr17 36351756 36398345 46590 * LOC440434 0.083 1 NA 0.200410269860881 62 0.0577835729329625 1 1 0 -8.5832577485211 LTS-010 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.714 1 NA NA NA NA NA LTS-010 chr17 36421727 37401448 979722 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, LOC440434, GPR179, FBXO47, CWC25, PSMB3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, MRPL45, RPL23) 0.0471421979719491 21 0.0273713440698566 0.78273402855843 1844 0.177008894781855 2 2 0 -6.79509528067713 LTS-010 chr17 37401449 37401721 273 * character(0) NA 0 NA 1.553 1 NA NA NA NA NA LTS-010 chr17 37401722 38517392 1115671 * c(LRRC3C, MIR4728, SNORD124, STARD3, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, GSDMA, GRB7, MSL1, NEUROD2, RAPGEFL1, CDK12, PNMT, MED1, GSDMB, PSMD3, RARA, THRA, PPP1R1B, MIEN1, FBXL20, TCAP, PGAP3, ORMDL3, NR1D1, MED24, CDC6) 0.0446430625171731 25 0.0132981201679034 1.07662256447767 2560 0.256087065260988 3 3 0 -6.88134728760472 LTS-010 chr17 38517393 38519127 1735 * c(GJD3, RARA) NA 0 NA 2.694 1 NA NA NA NA NA LTS-010 chr17 38519128 38976540 457413 * c(CCR7, GJD3, KRT222, KRT25, TMEM99, KRT28, KRT24, KRT27, IGFBP4, KRT26, KRT10, RARA, SMARCE1, TOP2A, TNS4) 0.0265630076636861 16 0.0082135558681974 1.35140306501568 937 0.31293425249066 4 4 0 -6.80192924130234 LTS-010 chr17 38976541 39222207 245667 * c(KRT40, TMEM99, KRT23, KRT10, KRT12, KRT39, KRT20, KRTAP1-4, KRTAP2-2, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP3-3, KRTAP2-4) 0.0285493750535813 11 0.00687551650952329 1.46157016195277 546 0.292763817409561 4 4 0 -6.73742272031322 LTS-010 chr17 39222208 39305956 83749 * c(KRTAP4-9, KRTAP4-7, KRTAP4-11, KRTAP4-8, KRTAP4-6, KRTAP4-12, KRTAP4-5) 0.047 1 NA 1.50251402500501 123 0.364080973069663 4 4 0 -5.76507032711418 LTS-010 chr17 39305957 39535859 229903 * c(KRTAP9-7, KRTAP16-1, KRTAP9-6, KRTAP29-1, KRT33A, KRT33B, KRT34, KRTAP9-1, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2) 0.242070869527582 9 0.113050996359067 1.51377087455938 341 0.532323293404537 4 3 1 -6.75784853821403 LTS-010 chr17 39535860 39550018 14159 * c(KRT31, KRT34) 0.037 1 NA 1.35864590683101 21 0.381075008239535 4 4 0 -5.76461318103703 LTS-010 chr17 39550019 39882203 332185 * c(LOC100505782, EIF1, LINC00974, GAST, KRT42P, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT35, KRT38, KRT37, KRT36, HAP1) 0.0268321758912208 15 0.019662146373171 1.5039635636237 802 0.382983057286301 4 4 0 -6.74357961263746 LTS-010 chr17 39882204 39883307 1104 * c(JUP, HAP1) NA 0 NA 0.96 1 NA NA NA NA NA LTS-010 chr17 39883308 40283673 400366 * c(P3H4, NT5C3B, CNP, ZNF385C, KAT2A, NKIRAS2, KLHL10, JUP, ACLY, KLHL11, RAB5C, FKBP10, DNAJC7, DHX58, TTC25, HAP1, HSPB9) 0.0283303854478105 12 0.0123423390543824 1.09067413496095 1149 0.243846425131057 4 4 0 -7.03371256797034 LTS-010 chr17 40283674 40283715 42 * RAB5C NA 0 NA 1.674 1 NA NA NA NA NA LTS-010 chr17 40283716 40481529 197814 * c(KCNH4, HCRT, RAB5C, STAT3, STAT5A, STAT5B, GHDC) 0.0431766235091372 2 0.00848528137423857 1.47461873352642 486 0.286790081055515 3 3 0 -7.06251361881114 LTS-010 chr17 40481530 40481830 301 * STAT3 NA 0 NA 1.44301450033251 7 0.11710739881469 4 NA NA -5.76441015783431 LTS-010 chr17 40481831 40483428 1598 * STAT3 NA 0 NA 0.88 1 NA NA NA NA NA LTS-010 chr17 40483429 40717672 234244 * c(MIR5010, PTRF, HSD17B1, NAGLU, ATP6V0A1, STAT3, COASY) 0.052 1 NA 1.1005266696628 353 0.265435069202487 3 3 0 -5.76441276794864 LTS-010 chr17 40717673 40913249 195577 * c(RAMP2-AS1, RAMP2, FAM134C, EZH1, TUBG2, CCR10, PSMC3IP, MLX, TUBG1, PLEKHH3, COASY, CNTNAP1) NA 0 NA 1.12296201271421 601 0.253048327687249 3 NA NA -5.76507385150047 LTS-010 chr17 40913250 40913726 477 * c(RAMP2-AS1, RAMP2) NA 0 NA 1.351 1 NA NA NA NA NA LTS-010 chr17 40913727 41466073 552347 * c(LINC00910, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, TMEM106A, CNTD1, RUNDC1, G6PC, COA3, AOC2, IFI35, LINC00671, NBR1, RPL27, WNK4, BRCA1, AARSD1, RND2, VPS25, AOC3, BECN1, AOC4P) 0.267286372446677 9 0.12617492267131 1.44833308949669 1233 0.385528816063939 4 3 1 -6.73336669719056 LTS-010 chr17 41466074 41879074 413001 * c(LINC00910, MIR2117, DHX8, DUSP3, ETV4, C17orf105, ARL4D, MEOX1, MPP3, SOST) 0.026 1 NA 1.46768757688502 355 0.345381833185645 4 4 0 -5.76510441738955 LTS-010 chr17 41879075 44172117 2293043 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, GPATCH8, FAM215A, FZD2, GFAP, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0260174842884529 69 0.011236605173391 1.4672275132939 3683 0.462676609058262 4 4 0 -6.78034092307676 LTS-010 chr17 44172118 44336603 164486 * character(0) NA 0 NA 0.954757544878274 43 0.270686373792274 3 NA NA -5.7919178436978 LTS-010 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.619 1 NA NA NA NA NA LTS-010 chr17 44336710 44782233 445524 * character(0) 0.028 1 NA 0.52978243790495 68 0.296617070592986 1 1 0 -5.91398111446329 LTS-010 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.685 1 NA NA NA NA NA LTS-010 chr17 44788332 45201319 412988 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.038666199569563 6 0.011148990985735 1.40310818497398 278 0.340035922499344 3 3 0 -6.85741753903264 LTS-010 chr17 45201320 45214420 13101 * CDC27 0 1 NA 1.16822900185177 11 0.208275822365003 3 3 0 -5.76503124732668 LTS-010 chr17 45214421 45214473 53 * CDC27 0.41 1 NA 0.375 1 NA NA NA NA NA LTS-010 chr17 45214474 45249372 34899 * CDC27 0.310036791104455 16 0.109551129615354 0.914595104136762 78 0.331681458998073 3 2 1 -6.80311073525952 LTS-010 chr17 45249373 45266432 17060 * CDC27 0.018 1 NA 1.06270293960174 13 0.306093709465515 3 3 0 -5.76455267373928 LTS-010 chr17 45266433 45286843 20411 * c(MYL4, CDC27) NA 0 NA 0.796210350919967 18 0.319730365364236 2 NA NA -5.76463451135893 LTS-010 chr17 45286844 47904770 2617927 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, PRR15L, CDK5RAP3, NA NA NA NA NA NA NA NA NA LTS-010 SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1) 0.0285143714763536 72 0.0184725349144584 1.39633834386371 3643 0.550683880617351 4 4 0 -6.73881502775824 LTS-010 NA NA NA NA LTS-010 chr17 47904771 47904860 90 * KAT7 NA 0 NA 1.737 1 NA NA NA NA NA LTS-010 chr17 47904861 57058279 9153419 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, KAT7, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, DLX3, DLX4, SAMD14, PPM1E, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, OR4D1, LOC284080, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, NA NA NA NA NA NA NA NA NA LTS-010 EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, CA10, PCTP, RAD51C, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, FLJ45513, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.0268271950614675 97 0.0142751932600467 1.46712666164207 5853 0.35020675714329 4 4 0 -6.76270908574631 LTS-010 NA NA NA NA LTS-010 chr17 57058280 60674148 3615869 * c(MIR4729, MIR4737, APPBP2, TLK2, CLTC, C17orf64, EFCAB3, PPM1E, GDPD1, METTL2A, NACA2, SKA2, YPEL2, C17orf82, MIR21, MIR301A, TBC1D3P2, TRIM37, RNFT1, TUBD1, PTRH2, BCAS3, SMG8, PRR11, INTS2, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, TBX2, CA4, MIR454, DHX40, VMP1, BRIP1, USP32, PPM1D, TBX4, MED13) 0.0292896056699678 20 0.012785168216171 1.37672813561265 2555 0.337100101782042 4 4 0 -6.77274489206352 LTS-010 chr17 60674149 60678119 3971 * TLK2 NA 0 NA 1.68 1 NA NA NA NA NA LTS-010 chr17 60678120 62082752 1404633 * c(DCAF7, TLK2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, CYB561, MARCH10, ACE, TANC2, GH1, GH2, ICAM2, MAP3K3, TACO1, CCDC47, PSMC5, SCN4A, SMARCD2, LOC729683, LIMD2, KCNH6, STRADA, PRR29, CD79B, MRC2) 0.0180507144040363 9 0.00984603699182795 1.50618247312761 1666 0.319316935144028 5 5 0 -7.13856315517546 LTS-010 chr17 62082753 62083862 1110 * ICAM2 NA 0 NA 1.061 1 NA NA NA NA NA LTS-010 chr17 62083863 67149731 5065869 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, PSMD12, SMURF2, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, HELZ) 0.0278820590625026 55 0.0143525358802996 1.36134894266446 3140 0.311825905048118 4 4 0 -6.83708734037107 LTS-010 chr17 67149732 67149939 208 * ABCA10 NA 0 NA 1.563 1 NA NA NA NA NA LTS-010 chr17 67149940 80363278 13213339 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, ABCA10, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, NA NA NA NA NA NA NA NA NA LTS-010 KIF19, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA5, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.0288704563164482 405 0.0207708032628104 1.43401784535986 14773 0.368598955275397 4 4 0 -6.73452765436999 LTS-010 NA NA NA NA LTS-010 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 2.87829874135712 39 1.03968621732681 8 NA NA -5.76442039429339 LTS-010 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.166 1 NA NA NA NA NA LTS-010 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0292555608548313 24 0.0131733151440349 1.39819883304284 878 0.35257517164114 4 4 0 -6.73600400473319 LTS-010 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.67525918228407 13 0.242312682081306 5 NA NA -5.76564587802202 LTS-010 chr18 116845 121139 4295 * ROCK1P1 0.399 1 NA 1.24456186239468 25 0.231486522285856 3 3 0 -5.76512385975343 LTS-010 chr18 121140 5132835 5011696 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.463210945376939 70 0.0472895599944856 1.35348516213104 1967 0.349757408165106 4 2 2 -6.9180498881325 LTS-010 chr18 5132836 5132925 90 * character(0) NA 0 NA 2.29 1 NA NA NA NA NA LTS-010 chr18 5132926 6302077 1169152 * c(MIR3976, LINC00526, EPB41L3, LINC00667, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, L3MBTL4) 0.468698999764315 10 0.0299445784371358 1.74012056143027 468 0.447328777532105 4 2 2 -7.21560432707322 LTS-010 chr18 6302078 6889973 587896 * c(LINC01387, MIR4317, ARHGAP28, L3MBTL4) 0.37 1 NA 2.00327700830319 103 0.430549244137812 6 6 0 -5.77047731809647 LTS-010 chr18 6889974 11066281 4176308 * c(LOC100192426, RALBP1, RAB31, APCDD1, RAB12, ANKRD12, MTCL1, LAMA1, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, PIEZO2, ARHGAP28, TXNDC2, NAPG, VAPA, PPP4R1) 0.407350817735993 65 0.063943962095428 1.80976168561502 2205 0.457626324676524 5 3 2 -6.73961337193346 LTS-010 chr18 11066282 11148418 82137 * PIEZO2 NA 0 NA 1.193 1 NA NA NA NA NA LTS-010 chr18 11148419 15004191 3855773 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, ZNF519, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, RNMT) 0.402848596961288 38 0.109393832863481 1.44126198038922 1873 1.87181773971103 5 3 2 -6.76237673863953 LTS-010 chr18 15004192 15006193 2002 * character(0) NA 0 NA 1.72591161506214 27 0.613406847136515 5 NA NA -5.76441321785552 LTS-010 chr18 18529727 18529837 111 * ROCK1 0.445 1 NA 1.20088805094732 3 0.223115067472668 3 3 0 -5.76441996862444 LTS-010 chr18 18529838 23738290 5208453 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.417044664376781 47 0.042616830766375 1.72621603155598 2778 0.461537316926018 5 3 2 -6.81566054380838 LTS-010 chr18 23738291 23748041 9751 * PSMA8 NA 0 NA 0.385 1 NA NA NA NA NA LTS-010 chr18 23748042 23750603 2562 * PSMA8 0.452252035799465 2 0.0417193000900063 0.48372652675368 43 0.185620094522621 2 1 1 -6.76146646960524 LTS-010 chr18 23750604 23758789 8186 * PSMA8 NA 0 NA 1.009 1 NA NA NA NA NA LTS-010 chr18 23758790 24442392 683603 * c(PSMA8, KCTD1, AQP4, TAF4B, PCAT18) 0.25624767778875 4 0.0285248429735672 1.58457077955144 292 0.368400129101073 4 3 1 -6.81059769951832 LTS-010 chr18 24442393 24722820 280428 * c(AQP4-AS1, AQP4, CHST9) NA 0 NA 1.55738293159716 53 0.209637746506975 4 NA NA -5.78737737479292 LTS-010 chr18 25530918 27879024 2348107 * c(CDH2, MIR302F) NA 0 NA 1.24619087692283 129 0.231346499350277 3 NA NA -6.13923268496562 LTS-010 chr18 28574092 28611061 36970 * DSC3 0.102 1 NA 0.507040801413745 67 0.118434662726511 1 1 0 -5.81565952839028 LTS-010 chr18 28611062 29205374 594313 * c(DSG2-AS1, DSG4, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, TTR, B4GALT6) 0.0848260665716189 22 0.0364478219231784 0.457745844118883 870 0.117640920124987 1 1 0 -6.97858173636834 LTS-010 chr18 29205375 29211097 5723 * B4GALT6 NA 0 NA 0.478861927623065 21 0.0862841098873229 1 NA NA -5.77144855569364 LTS-010 chr18 29211098 29218580 7483 * B4GALT6 NA 0 NA 1.167 1 NA NA NA NA NA LTS-010 chr18 29218581 29237860 19280 * B4GALT6 0.422 1 NA 1.12946951696549 9 0.0917298267256137 3 3 0 -5.76525622404067 LTS-010 chr18 29237861 29709240 471380 * c(SLC25A52, TRAPPC8, RNF138, RNF125, B4GALT6) 0.294906678780732 9 0.0611196458686657 1.30640206813024 362 0.44994612412558 4 3 1 -6.8908776101683 LTS-010 chr18 29709241 29709327 87 * RNF138 NA 0 NA 1.481 1 NA NA NA NA NA LTS-010 chr18 29709328 34414278 4704951 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, TPGS2, CCDC178, MIR187, MEP1B, WBP11P1, RNF138, MOCOS, RPRD1A, ELP2, KIAA1328, KLHL14, GAREM1, ZNF24, FHOD3, ASXL3, C18orf21, ZNF397, NOL4) 0.274801932631804 30 0.0489727111438769 1.51146111909674 2456 0.36641739199511 4 3 1 -6.80658735736019 LTS-010 chr18 34414279 34539489 125211 * KIAA1328 NA 0 NA 1.35702129761581 25 0.250731981738801 4 NA NA -5.76872531147057 LTS-010 chr18 34539490 34646830 107341 * KIAA1328 NA 0 NA 0.409 1 NA NA NA NA NA LTS-010 chr18 34646831 39662517 5015687 * c(MIR4318, MIR5583-2, MIR5583-1, PIK3C3, CELF4, KIAA1328, KC6, MIR924HG) 0.033 1 NA 0.468327095928227 269 0.106449795194566 1 1 0 -7.70523098507342 LTS-010 chr18 39662518 57567699 17905182 * c(SNORD58C, LINC01630, MIR1539, MIR4319, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4529, MIR3591, MIR4743, MIR4744, LINC-ROR, ACAA2, MALT1, POLI, HAUS1, ALPK2, LOXHD1, STARD6, C18orf25, CCBE1, C18orf54, TCEB3C, DCC, ZBTB7C, SKA1, CFAP53, FECH, NEDD4L, WDR7, SETBP1, SNORD58B, SNORD58A, DYNAP, BOD1L2, LINC00907, SIGLEC15, GRP, ST8SIA5, RAX, CXXC1, CPLX4, OACYLP, LMAN1, MIR122, SMAD2, NA NA NA NA NA NA NA NA NA LTS-010 SMAD4, SMAD7, MBD1, ME2, MYO5B, NARS, RNF165, C18orf32, ATP5A1, ST8SIA3, IER3IP1, TCEB3B, MEX3C, ATP8B1, PMAIP1, DYM, ZNF532, ELAC1, MAPK4, EPG5, RAB27B, RIT2, RPL17, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, CCDC68, SLC14A2, KATNAL2, MRO, HDHD2, MBD2, PSTPIP2, PIAS2, SEC11C, TXNL1, LIPG, ONECUT2, CTIF) 0.0914978788724316 145 0.0432290001727856 0.452497828463692 7269 0.120653919352492 1 1 0 -8.98284319264181 LTS-010 NA NA NA NA LTS-010 chr18 57567700 58040010 472311 * c(MC4R, PMAIP1) NA 0 NA 0.480959501155854 75 0.120264853365208 1 NA NA -6.06932040159713 LTS-010 chr18 58040011 58279025 239015 * character(0) NA 0 NA 1.528 1 NA NA NA NA NA LTS-010 chr18 58279026 59174759 895734 * CDH20 0.222 1 NA 1.44915036448469 85 0.242982392648634 4 4 0 -5.76469275325514 LTS-010 chr18 59174760 61463704 2288945 * c(LINC01544, RNF152, PHLPP1, PIGN, KDSR, CDH20, SERPINB5, SERPINB13, ZCCHC2, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, VPS4B) 0.27380669914971 48 0.0440379430211257 1.42431741760614 1711 1.20572978506287 4 3 1 -6.75952164777497 LTS-010 chr18 61463705 65945722 4482018 * c(CDH7, MIR5011, LINC00305, HMSD, LOC284294, CDH19, LINC01538, SERPINB2, SERPINB8, SERPINB10, LOC643542, SERPINB7, DSEL) 0.259288606066498 7 0.0197520342532828 1.60185908638718 750 0.425819735956473 4 3 1 -6.93685379764294 LTS-010 chr18 65945723 66344180 398458 * TMX3 NA 0 NA 1.164 1 NA NA NA NA NA LTS-010 chr18 66344181 71826035 5481855 * c(LINC01541, LOC100505817, CD226, CBLN2, FBXO15, DOK6, RTTN, TIMM21, LOC400655, TMX3, CCDC102B, NETO1, SOCS6) 0.349731059676677 30 0.0776014056632967 1.09264582005832 944 0.281618439724099 3 2 1 -6.73740097460515 LTS-010 chr18 71826036 72776370 950335 * c(FAM69C, CYB5A, TIMM21, LINC00909, ZNF407, CNDP2, C18orf63, CNDP1) 0.265599499587532 16 0.0429076527750781 1.44319683848855 496 0.31621978982046 4 3 1 -6.73339698914504 LTS-010 chr18 72776371 72907027 130657 * ZNF407 NA 0 NA 1.018 1 NA NA NA NA NA LTS-010 chr18 72907028 74779866 1872839 * c(LOC100131655, TSHZ1, ZADH2, SMIM21, LINC00908, LOC339298, C18orf65, MBP, ZNF236, ZNF516) 0.360063417311442 34 0.0476470703769709 1.09727604359039 927 0.260552060260198 3 2 1 -6.78614150426836 LTS-010 chr18 74779867 74980913 201047 * c(GALR1, MBP) NA 0 NA 1.20722886574651 37 0.165198297441219 3 NA NA -5.80110217435586 LTS-010 chr18 76740284 77067000 326717 * c(SALL3, ATP9B) 0.05 1 NA 0.77890732943023 157 0.179924644886856 2 2 0 -5.76715828064455 LTS-010 chr18 77067001 77806402 739402 * c(TXNL4A, KCNG2, ATP9B, HSBP1L1, NFATC1, RBFA, PQLC1, CTDP1) 0.0408542038215004 12 0.0200854236306891 0.751754457193721 488 0.204258380068618 2 2 0 -7.01941236115341 LTS-010 chr18 77806403 77807137 735 * c(RBFADN, RBFA) 0.105052668077979 2 0.0254558441227157 0.348033076210953 16 0.145460590309999 1 1 0 -6.76634599290601 LTS-010 chr18 77807138 77807211 74 * c(RBFADN, RBFA) 0.18 1 NA 0.235229428999571 3 0.145644544468145 1 1 0 -5.76512209922556 LTS-010 chr18 77807212 77875628 68417 * c(RBFADN, ADNP2, RBFA) 0.0935372451102465 4 0.0506820152190761 0.4186835334061 75 0.140383098749153 1 1 0 -6.74051307167287 LTS-010 chr18 77875629 77890972 15344 * ADNP2 NA 0 NA 0.05 1 NA NA NA NA NA LTS-010 chr18 77890973 77926862 35890 * c(PARD6G-AS1, ADNP2, PARD6G) 0.427261183210951 5 0.0752429398681365 0.0861083969704669 191 0.0278605075502752 0 0 0 -6.78448363103819 LTS-010 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.065517541473028 17 0.0228979513596869 0 NA NA -8.88172055333442 LTS-010 chr19 107416 107456 41 * character(0) 0.467 1 NA 1.345 1 NA NA NA NA NA LTS-010 chr19 107457 8841558 8734102 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-010 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, OR2Z1, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, LINC01002, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ANGPTL4, MARCH2, CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, OR4F17, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MIDN, DPP9, R3HDM4, TMEM259, TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.447210922883011 447 0.0527603993975143 0.751199607512419 14795 0.194365757826223 2 1 1 -6.76499954949531 LTS-010 NA NA NA NA LTS-010 chr19 8841559 9000185 158627 * c(ZNF558, OR2Z1, MBD3L1, MUC16) 0.245 1 NA 0.77921804376318 211 0.168321322518967 2 2 0 -5.76599261536918 LTS-010 chr19 9000186 9021118 20933 * MUC16 0.264659093470349 19 0.128540206921109 0.804184688129279 169 0.183728858355199 4 3 1 -6.85703298340479 LTS-010 chr19 9021119 9024994 3876 * MUC16 0.459 1 NA 0.717402663231861 15 0.0639122910900631 2 2 0 -5.76652361624561 LTS-010 chr19 9024995 9045834 20840 * MUC16 0.491 1 NA 0.760745205086088 51 0.178868820373929 2 2 0 -5.76441217561283 LTS-010 chr19 9045835 9324873 279039 * c(OR7D4, OR7G1, OR1M1, OR7D2, OR7G2, OR7G3, ZNF317, MUC16) 0.462657432140542 49 0.0317352997732916 0.850123930300932 973 0.150198239337599 2 1 1 -7.00434032453808 LTS-010 chr19 9324874 10169278 844405 * c(ZNF559-ZNF177, ZNF266, OR7D4, ZNF560, ZNF846, OR7E24, ZNF561-AS1, ZNF699, C3P1, COL5A3, RDH8, PIN1, ZNF562, FBXL12, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.466731823113114 24 0.0206049364424427 0.763495057774583 1120 0.252853551813345 2 1 1 -7.34706341374665 LTS-010 chr19 10169279 10216835 47557 * c(C3P1, C19orf66, ANGPTL6) 0.451 1 NA 0.737757415421322 101 0.207322891611463 2 2 0 -5.76513159639212 LTS-010 chr19 10216836 11979990 1763155 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, ZNF833P, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, NA NA NA NA NA NA NA NA NA LTS-010 PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ELOF1, ATG4D, EIF3G, C19orf52, ZNF439, S1PR2, RAB3D, KEAP1) 0.447503673907542 70 0.0679965350475148 0.74592170228547 3827 0.190109191315488 2 1 1 -6.74808296437643 LTS-010 NA NA NA NA LTS-010 chr19 11979991 11980213 223 * ZNF439 NA 0 NA 2.046 1 NA NA NA NA NA LTS-010 chr19 11980214 12061557 81344 * c(ZNF763, ZNF69, ZNF700, ZNF439) 0.477 1 NA 1.05800598491993 102 0.197954322516951 3 3 0 -5.76645758678426 LTS-010 chr19 12061558 12075865 14308 * c(ZNF763, ZNF700) NA 0 NA 0.802 1 NA NA NA NA NA LTS-010 chr19 12075866 12759271 683406 * c(ZNF625-ZNF20, ZNF443, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF763, ZNF844, ZNF788, MAN2B1, ZNF44, ZNF490, ZNF878, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.422520563955489 26 0.0615253293680428 0.713969307154286 1271 0.219224647681945 2 1 1 -6.84716764866462 LTS-010 chr19 12759272 12760002 731 * MAN2B1 NA 0 NA 1.456 1 NA NA NA NA NA LTS-010 chr19 12760003 19770774 7010772 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, NA NA NA NA NA NA NA NA NA LTS-010 SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 IL27RA, GDF15, TECR, IER2, ADGRE5) 0.44987113898059 292 0.0508242464036756 0.763687939100989 12353 0.182455793957649 2 1 1 -6.73937190886736 LTS-010 NA NA NA NA LTS-010 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.516 1 NA NA NA NA NA LTS-010 chr19 19772755 23925772 4153018 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.455103208433029 31 0.0467386234792081 0.690486027184979 1383 0.170516277802909 2 1 1 -7.50522700570995 LTS-010 chr19 23925773 24345121 419349 * c(HAVCR1P1, ZNF681, RPSAP58, ZNF726, ZNF254) NA 0 NA 0.734312902607529 175 0.179821828440208 2 NA NA -5.77541893024681 LTS-010 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.485 1 NA 0.752914739016421 5 0.201193936290337 2 2 0 -5.76752928394246 LTS-010 chr19 29567135 35851337 6284203 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, LOC284395, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, UQCRFS1, USF2, KCTD15, PLEKHF1, NA NA NA NA NA NA NA NA NA LTS-010 CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.436362475384207 79 0.0541040626412432 0.771787555192797 3485 0.205863938895334 2 1 1 -6.76055014649551 LTS-010 NA NA NA NA LTS-010 chr19 35851338 35863609 12272 * FFAR3 0.358669161666163 2 0.111722871427475 0.266816322479431 39 0.378543896769419 3 2 1 -6.84249533513613 LTS-010 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.614 1 NA NA NA NA NA LTS-010 chr19 35863628 40377034 4513407 * c(LINC01531, LOC100129935, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, DLL3, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, NA NA NA NA NA NA NA NA NA LTS-010 FBL, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, LGALS13, HNRNPL, APLP1, ZNF260, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, NPHS1, ATP4A, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LRFN1, ZFP14, ZNF529, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, TIMM50, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.448820966320945 140 0.0592574920133499 0.779587557589792 8106 0.178009083855848 2 1 1 -6.77758266903221 LTS-010 NA NA NA NA LTS-010 chr19 40377035 40384094 7060 * FCGBP NA 0 NA 0.432 1 NA NA NA NA NA LTS-010 chr19 40384095 40406034 21940 * FCGBP NA 0 NA 0.166937767684188 40 0.307627563701171 0 NA NA -5.82959723144253 LTS-010 chr19 40406035 52133720 11727686 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, NA NA NA NA NA NA NA NA NA LTS-010 LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, KLK11, HNRNPUL1, CLASRP, KPTN, KLK8, EGLN2, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CLDND2, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, C19orf47, CRX, VSIG10L, C19orf84, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, CCDC155, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AP2A1, DBP, ZNF296, DEDD2, ZNF114, ZNF780B, SPACA4, DMPK, DMWD, MEGF8, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, AKT2, ETFB, FCGRT, ATF5, CARD8, CYP2G1P, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, SIGLEC7, LYPD3, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 EHD2, FOXA3, HRC, PRMT1, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, KCNA7, KCNC3, B3GNT8, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIM2, LIPE, SIGLEC16, LOC400710, IGLON5, BCAM, MIR150, MAP3K10, KLK14, KLK12, PSG8, MIR330, IGFL4, MYBPC2, CEACAM6, ATP1A3, NKG7, NOVA2, NPAS1, NTF4, NUCB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PAFAH1B3, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, RAB4B, POLD1, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, AXL, SMG9, IRGC, CABP5, PRRG2, KLK7, KLK6, KLK10, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, PSMC4, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, PRX, SPTBN4, MARK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RPS19, RRAS, RTN2, CLEC11A, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, VASP, XRCC1, ZNF45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF175, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, COQ8B, CNTD2, FUZ, OPA3, ITPKC, B9D2, CALM3, RSPH6A, MED25, SYMPK, MIA, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, SYT3, AKT1S1, CNFN, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, FCGBP, SIGLEC10, SIGLEC12, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CEACAM21, CCDC97, EXOC3L2, CTU1, ARHGEF1, NUMBL, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34, CD79A) 0.449088142374243 370 0.0482041899051547 0.765331895341416 20725 0.242142660201295 2 1 1 -6.73949708084833 LTS-010 NA NA NA NA LTS-010 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.361 1 NA NA NA NA NA LTS-010 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.450803008495338 2 0.0233345237791561 1.23082507879587 39 0.521079583675677 4 2 2 -6.77558289993424 LTS-010 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.909 1 NA NA NA NA NA LTS-010 chr19 52196825 54726711 2529887 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, LILRB3, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, NA NA NA NA NA NA NA NA NA LTS-010 ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.454694569153643 144 0.0422546663446101 0.760786458849322 4118 0.190538952910277 2 1 1 -6.76612949282821 LTS-010 NA NA NA NA LTS-010 chr19 54726712 54726816 105 * c(LILRB3, LILRA6) 0.38 1 NA 0.620896732436306 3 0.264224021113398 2 2 0 -5.76444785002503 LTS-010 chr19 54726817 54744209 17393 * c(LILRB3, LILRA6) 0.270232177844346 9 0.11151843395202 0.873860468405839 42 0.276427958745686 4 3 1 -6.76856465908706 LTS-010 chr19 54744210 54744361 152 * c(LILRB3, LILRA6) 0.43 1 NA 0.79157055741785 4 0.114604755573231 2 2 0 -5.76441980147835 LTS-010 chr19 54744362 55328959 584598 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.409636788494547 59 0.101770438204538 0.743787472560348 1231 0.158581142215261 2 1 1 -6.81229903297335 LTS-010 chr19 55328960 55328998 39 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.952 1 NA NA NA NA NA LTS-010 chr19 55328999 55344322 15324 * c(KIR2DS4, KIR3DL1) 0.389082323165098 7 0.084434815658223 1.08517772099196 39 0.380746370856477 5 3 2 -6.76375363992952 LTS-010 chr19 55344323 55358655 14333 * c(KIR2DS4, KIR3DL1) 0.245 1 NA 1.19060304321276 17 0.301843185815962 3 3 0 -5.76497729480543 LTS-010 chr19 55358656 55358686 31 * c(KIR2DS4, KIR3DL1) 0.243531303133689 2 0.00212132034355964 1.28426655853863 2 0.0134350288425445 17 13 4 -8.83859354878141 LTS-010 chr19 55358687 55358705 19 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.504 1 NA NA NA NA NA LTS-010 chr19 55358706 55377280 18575 * c(KIR2DS4, KIR3DL1, KIR3DL2) 0.238409798584657 8 0.174754879351459 0.751818412186096 33 0.18192609534277 4 3 1 -6.8857019537175 LTS-010 chr19 55377281 55420801 43521 * c(FCAR, KIR3DL1, KIR3DL2, NCR1) 0.458 1 NA 0.767102159722357 69 0.166259243280275 2 2 0 -5.76444455357478 LTS-010 chr19 55420802 59080809 3660008 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, NA NA NA NA NA NA NA NA NA LTS-010 PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.441216363177119 199 0.0544075753421007 0.767795110954584 7224 0.332980967027095 2 1 1 -6.73654767437019 LTS-010 NA NA NA NA LTS-010 chr19 59080810 59084001 3192 * c(MZF1-AS1, MZF1) NA 0 NA 0.735980829922001 25 0.101598113499546 2 NA NA -5.76464230028006 LTS-010 chr20 68260 256573 188314 * c(C20orf96, DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) 0.168 1 NA 2.23118998423259 149 0.560377329003949 6 6 0 -5.7653552519324 LTS-010 chr20 256574 306299 49726 * c(C20orf96, SOX12, ZCCHC3) 0.15575189080038 9 0.0375399786893919 2.10521384991504 125 0.639250322012862 7 6 1 -6.7350017294716 LTS-010 chr20 306300 368715 62416 * c(TRIB3, SOX12, NRSN2) 0.0897335439938135 3 0.00907377172587747 4.76908255867606 155 5.69070269012669 12 11 1 -6.76266679248831 LTS-010 chr20 368716 826859 458144 * c(RBCK1, SLC52A3, TBC1D20, SRXN1, CSNK2A1, TRIB3, TCF15, FAM110A, SCRT2) 0.358120722919318 15 0.0364316712033179 1.09889985771379 635 0.254035958426314 3 2 1 -6.80023296718755 LTS-010 chr20 826860 1559302 732443 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, SIRPD, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, RAD21L1, FAM110A, PSMF1, SNPH) 0.268004240715894 22 0.0519852626469034 1.46898600274352 877 0.354153862099243 4 3 1 -6.73695616021446 LTS-010 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.821 1 NA NA NA NA NA LTS-010 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.823881651459195 39 0.249196046047529 2 NA NA -5.76575745940548 LTS-010 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.436 1 NA NA NA NA NA LTS-010 chr20 1600391 4781779 3181389 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, SIRPB1, NOP56, CENPB, RNF24, HSPA12B, TMC2, C20orf141, SIRPA, STK35, ADRA1D, PRNT, UBOX5, PRND, SPEF1, C20orf194, GNRH2, IDH3B, TGM6, ITPA, MIR103A2, OXT, PDYN, SMOX, C20orf27, AVP, AP5S1, SIRPG, PRNP, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, GFRA4, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, NA NA NA NA NA NA NA NA NA LTS-010 PANK2, ADAM33, SLC4A11, ATRN, LZTS3, RASSF2, CDC25B) 0.258357179698427 124 0.0425843110899977 1.45108668992243 3875 0.332014210066847 4 3 1 -6.7465405443758 LTS-010 NA NA NA NA LTS-010 chr20 4781780 4832973 51194 * RASSF2 NA 0 NA 1.089 1 NA NA NA NA NA LTS-010 chr20 4832974 5844122 1011149 * c(PCNA-AS1, LINC00658, PROKR2, LINC00654, C20orf196, TMEM230, PCNA, GPCPD1, LOC643406, CDS2, SLC23A2) 0.257372043914306 9 0.0895904260758059 1.1217449601513 775 0.70974098620098 4 3 1 -6.81153567905326 LTS-010 chr20 5844123 5903067 58945 * c(CHGB, C20orf196) 0.331 1 NA 1.1287908768703 37 0.246790381685536 3 3 0 -5.76475044253303 LTS-010 chr20 5903068 6065728 162661 * c(CHGB, LRRN4, TRMT6, CRLS1, FERMT1, MCM8) 0.364968454284707 14 0.056600780486212 1.07257933588912 461 0.266658360937882 3 2 1 -6.80162214531748 LTS-010 chr20 6065729 6065732 4 * FERMT1 NA 0 NA 1.219 1 NA NA NA NA NA LTS-010 chr20 6065733 25667631 19601899 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, NA NA NA NA NA NA NA NA NA LTS-010 LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.340369765518609 166 0.0574244157726886 1.1613182599444 7346 0.296639328719341 3 2 1 -7.0874594690569 LTS-010 NA NA NA NA LTS-010 chr20 25667632 25745577 77946 * c(ZNF337, FAM182B) NA 0 NA 0.787 1 NA NA NA NA NA LTS-010 chr20 25745578 25829290 83713 * FAM182B 0.382032477379743 14 0.0751189898585081 0.559176030443059 40 0.213334881805278 2 1 1 -7.22915958153848 LTS-010 chr20 25829291 25829292 2 * FAM182B 0.278 1 NA 1.19 1 NA NA NA NA NA LTS-010 chr20 25829293 25829352 60 * FAM182B 0.402578506119247 4 0.106268135707119 0.869317328638193 4 0.189501759006788 5 3 2 -6.73353635064805 LTS-010 chr20 25829353 25900135 70783 * FAM182B 0.279 1 NA 0.794954664963656 3 0.047056703383613 2 2 0 -5.79757878793762 LTS-010 chr20 25900136 26188981 288846 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.225889090503629 18 0.131505871038699 1.03303612945136 52 0.449137838406414 4 3 1 -6.87819039818952 LTS-010 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.771225131687667 3 0.00808290376865477 2 NA NA -5.76445546042425 LTS-010 chr20 29625845 29625876 32 * FRG1BP 0.307 1 NA 0.702 1 NA NA NA NA NA LTS-010 chr20 29625877 29652219 26343 * c(MLLT10P1, FRG1BP) 0.291714737605585 18 0.11452329443096 0.719746995746074 45 0.188536865082003 3 2 1 -6.94379473830009 LTS-010 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 0.99 1 NA NA NA NA NA LTS-010 chr20 29845417 33896974 4051558 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, C20orf203, REM1, NA NA NA NA NA NA NA NA NA LTS-010 GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.34103075887459 58 0.0549759888191424 1.12324580049614 5537 0.271443296707316 3 2 1 -6.74990502690691 LTS-010 NA NA NA NA LTS-010 chr20 33896975 33902449 5475 * c(UQCC1, GDF5) NA 0 NA 0.955 1 NA NA NA NA NA LTS-010 chr20 33902450 35857118 1954669 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.313793288621154 54 0.0724871033614852 1.05936121969229 3135 0.236585760341011 3 2 1 -6.88036683527073 LTS-010 chr20 35857119 35858352 1234 * RPN2 NA 0 NA 1.257 1 NA NA NA NA NA LTS-010 chr20 35858353 62872290 27013938 * c(ADA, ACOT8, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, LOC100287792, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, LINC00489, TRERNA1, SGK2, ARFRP1, OGFR-AS1, NA NA NA NA NA NA NA NA NA LTS-010 RGS19, SYCP2, WFDC2, CEBPB, ARFGEF2, TCFL5, SPINT3, BLCAP, TOMM34, SERINC3, ADRM1, OGFR, UBE2C, DIDO1, PTPRT, PKIG, HRH3, TP53RK, RBPJL, CHRNA4, DNTTIP1, FAM210B, PHACTR3, BHLHE23, NKAIN4, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, SLC32A1, ZBTB46, WFDC3, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, RBBP8NL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, EYA2, ZHX3, SLC9A8, ADNP, ZMYND8, SPO11, PRPF6, C20orf166-AS1, WFDC11, WFDC9, L3MBTL1, SS18L1, PPP1R16B, MTG2, GMEB2, SNORD12C, SNORA71B, SNORA71A, GHRH, TP53TG5, MOCS3, GNAS, WFDC10B, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, HNF4A, LOC339568, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ARHGAP40, KCNB1, KCNG1, KCNQ2, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, LAMA5, SPINT4, SUMO1P1, LBP, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ZFAS1, MYBL2, MYT1, NFATC2, NNAT, NTSR1, OPRL1, STMN3, SLC35C2, PRELID3B, PCK1, IFT52, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, RTEL1, PFDN4, PI3, PLCG1, PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZNF334, ZFP64, ARFGAP1, DOK5, DBNDD2, RNF114, SULF2, CTNNBL1, SLC2A4RG, PSMA7, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, PTPN1, NCOA5, RPRD1B, CDH26, KCNK15, DHX35, RPN2, RPS21, SDC4, MANBAL, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, BPI, SRC, SRMS, SNORA71E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SNORA71C, SNORA71D, STAU1, STK4, AURKA, TAF4, TCEA2, SNORD12, MIR645, MIR647, TFAP2C, TGM2, TNNC2, TOP1, TPD52L2, UBE2V1, YWHAB, SYS1-DBNDD2, HAR1A, HAR1B, MKRN7P, ZNF217, GDAP1L1, LINC01260, FNDC11, PPDPF, TTPAL, BIRC7, NPEPL1, ACTR5, DNAJC5, PABPC1L, TUBB1, ZBP1, SLC2A10, FAM83D, CABLES2, NCOA3, CHD6, PARD6B, ZGPAT, RAE1, TOX2, BCAS1, HELZ2, KIAA1755, STX16, TNFRSF6B, MATN4, DPM1, WISP2, EMILIN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, TTI1, SPATA2, OSBPL2, MAFB) 0.3391590116055 474 0.056084079314072 1.1120752955009 22357 0.260932159484883 3 2 1 -6.76206435900098 LTS-010 NA NA NA NA LTS-010 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.06601782027402 119 0.44619227334658 3 NA NA -5.76469585923566 LTS-010 chr21 9825764 9825981 218 * MIR3648-1 0.338 1 NA 0.47988400782136 7 0.344897086099607 1 1 0 -5.76442744204568 LTS-010 chr21 9825982 11098723 1272742 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.286671490692499 27 0.119414466522339 0.53653471685082 165 0.184511458572143 1 1 0 -8.99062175039086 LTS-010 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 0.711249223594996 3 0.0415692193816531 2 NA NA -5.76448405853659 LTS-010 chr21 14745307 14917181 171875 * MIR3156-3 0.442 1 NA 0.631629187274444 57 0.259703696594913 2 2 0 -5.81812881073875 LTS-010 chr21 14917182 15988325 1071144 * c(SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.452696660915818 19 0.0407663431870226 0.695664947537707 374 0.191422146019086 2 1 1 -6.89962955313222 LTS-010 chr21 15988326 15991856 3531 * LOC388813 NA 0 NA 1.032 1 NA NA NA NA NA LTS-010 chr21 15991857 46190842 30198986 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, RNU6-67P, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, USP16, CCT8, WDR4, BTG3, HSF2BP, ADAMTS5, LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, NA NA NA NA NA NA NA NA NA LTS-010 TCP10L, CHODL, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, ICOSLG, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, USP25, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, KRTAP8-1, KRTAP11-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00317, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, LINC00114, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, PRDM15, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, C21orf2, TMEM50B, MIR802, RUNX1-IT1, LRRC3, NRIP1, CHAF1B, C21orf33, DSCR8, URB1-AS1, PDXK, RRP1, RUNX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PSMG1, CBR1, CBR3, CBS, SYNJ1, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.448296006037506 438 0.0633996085175358 0.766496248267745 16071 0.445271223650392 2 1 1 -6.73739478856484 LTS-010 NA NA NA NA LTS-010 chr21 46190843 46233863 43021 * c(SUMO3, UBE2G2) 0.495 1 NA 0.707915972942845 87 0.164018057794088 2 2 0 -5.76969636739556 LTS-010 chr21 46233864 48022375 1788512 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, ITGB2, PICSAR, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.443106691074408 115 0.0647906385964286 0.747842152250627 2651 0.214222920821113 2 1 1 -6.7422074393447 LTS-010 chr21 48022376 48084993 62618 * c(PRMT2, S100B) NA 0 NA 0.717988648399572 95 0.130050649104827 2 NA NA -5.77243098041846 LTS-010 chr22 16157762 20305282 4147521 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-010 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.0951705761407858 150 0.0531133606804733 0.449761456139097 4467 0.121240269788478 1 1 0 -7.3067959004513 LTS-010 NA NA NA NA LTS-010 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.414 1 NA NA NA NA NA LTS-010 chr22 20307254 20717834 410581 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0.082 1 NA 0.223198730277292 39 0.178743243504518 1 1 0 -7.92068391782544 LTS-010 chr22 20717835 20717933 99 * character(0) NA 0 NA 0.541 1 NA NA NA NA NA LTS-010 chr22 20717934 24323230 3605297 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, SLC2A11, NA NA NA NA NA NA NA NA NA LTS-010 MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.0896729802207922 80 0.0523282588781166 0.442374842928455 4269 0.162411725720019 1 1 0 -6.90967386010604 LTS-010 NA NA NA NA LTS-010 chr22 24323231 24324893 1663 * character(0) NA 0 NA 0.835 1 NA NA NA NA NA LTS-010 chr22 24324894 24384316 59423 * c(GSTTP1, GSTT1, LOC391322) 0.0891723561270103 5 0.0256651514704278 0.787262606762505 76 0.299025395565297 1 1 0 -6.97151223804319 LTS-010 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.395 1 NA NA NA NA NA LTS-010 chr22 24400149 25003934 603786 * c(ADORA2A, SPECC1L, CABIN1, GGT1, GGT5, POM121L9P, LRRC75B, UPB1, SUSD2, ADORA2A-AS1, GSTTP2, SNRPD3, GUCD1) 0.0948387487902671 5 0.0912211598259965 0.432797095501292 896 0.103624644074357 1 1 0 -6.75133431961294 LTS-010 chr22 25003935 25004008 74 * GGT1 0.5 1 NA 0.426585473866874 5 0.0489315848915606 1 1 0 -5.76441131016689 LTS-010 chr22 25004009 25574407 570399 * c(LOC100128531, SGSM1, TMEM211, GGT1, PIWIL3, BCRP3, POM121L10P, TOP1P2, KIAA1671) 0.188058529912954 12 0.161373907056835 0.418522494990799 498 0.116139132917339 1 1 0 -6.91310067815095 LTS-010 chr22 25574408 25586744 12337 * KIAA1671 0.14 1 NA 0.446268450066899 31 0.105407300149141 1 1 0 -5.76628958599462 LTS-010 chr22 25586745 51117580 25530836 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3201, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3619, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4764, MIR4535, ZNRF3-AS1, EFCAB6-AS1, APOBEC3A_B, DNAL4, SF3A1, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, NA NA NA NA NA NA NA NA NA LTS-010 NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, CHEK2, PACSIN2, PHF21B, KLHDC7B, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, EMID1, ANKRD54, CPT1B, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, FBLN1, MORC2, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, TTC28, GCAT, CBX6, NPTXR, PES1, CBX7, SLC16A8, SEC14L2, MAPK8IP2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PLXNB2, PITPNB, PISD, OSBP2, MAFF, BRD1, ARHGAP8, APOL2, AP1B1P1, TFIP11, PRR14L, SERHL2, BPIFC, XRCC6, C22orf31, TBC1D22A, C22orf24, CBY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 SUN2, FBXO7, RHBDD3, TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, SEC14L3, RNU12, ATP5L2, SNORD43, INPP5J, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, LOC284933, CARD10, PARVB, NCAPH2, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, SDC4P, CHKB-CPT1B, OGFRP1, LINC00207, LGALS1, LGALS2, LIF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 LIMK2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, SRRD, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, MB, PIM3, MCM5, MFNG, MGAT3, MN1, MPST, MIAT, SHISA8, ODF3B, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, GTSE1, MTFP1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, TUG1, FAM118A, TTC38, CCDC157, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZMAT5, SEPT3, MAPK11, EIF4ENIF1, PANX2, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SLC5A1, SMTN, SLC5A4, GATSL3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TSPO, TIMP3, MIR658, MIR659, TST, SEC14L6, LOC730668, UPK3A, WNT7B, XBP1, YWHAH, MPPED1, CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ADM2, FOXRED2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, SELENOO, L3MBTL2, TBC1D10A, HDAC10, PLA2G6, KREMEN1, ZNRF3, ASCC2, LDOC1L, POLDIP3, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1644, SHANK3, KIAA1656, MICALL1, TUBGCP6, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, NA, LMF2, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PICK1, GAL3ST1, GTPBP1, APOBEC3B, CELSR1, DEPDC5, PPP6R2, SFI1, ZBED4, JOSD1, RBX1, SCO2) 0.0961255627869503 629 0.0422664101785854 0.423653275114756 28025 0.186508662994766 1 1 0 -6.73657114422408 LTS-010 NA NA NA NA LTS-010 chr22 51117581 51220846 103266 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.402765184644641 232 0.0980372418581983 1 NA NA -5.7801279210084 LTS-010 chrX 2699993 2700157 165 * XG 0.128 1 NA 0.298938287560352 3 0.230747336568233 1 1 0 -5.76463337038698 LTS-010 chrX 2700158 10062314 7362157 * c(LINC01546, CLDN34, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.0957595620506992 61 0.0419762357958012 0.438229108273263 1884 0.126024906301617 1 1 0 -7.05860313203316 LTS-010 chrX 10062315 10066535 4221 * WWC3 NA 0 NA 0.551 1 NA NA NA NA NA LTS-010 chrX 10066536 11161872 1095337 * c(CLCN4, HCCS, ARHGAP6, MID1, WWC3) 0 1 NA 0.491260931384929 606 0.128750382582703 1 1 0 -6.53785595889098 LTS-010 chrX 11161873 11162033 161 * ARHGAP6 NA 0 NA 0.39 1 NA NA NA NA NA LTS-010 chrX 11162034 16861635 5699602 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, AMELX, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, ARHGAP6, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.0857868286548729 27 0.0459639707780628 0.430092940709269 3051 0.103280419112659 1 1 0 -6.86605074147814 LTS-010 chrX 16861636 49143288 32281653 * c(SNORA11C, HDAC6, SUPT20HL1, PHKA2-AS1, LOC100132831, UXT-AS1, SCARNA9L, MIR23C, MIR4769, MIR4768, PQBP1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SSX3, TIMM17B, SCML2, PRDX4, EBP, RAI2, PIM2, IL1RAPL1, WDR45, PRAF2, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, ZNF645, FAM47A, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, ELK1, NA NA NA NA NA NA NA NA NA LTS-010 CNKSR2, ACOT9, SMPX, FTSJ1, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, GATA1, GK, GPR82, GPKOW, PCSK1N, SSX6, SSX9, GPR34, LINC01281, CFAP47, MAGEB18, CCDC22, SH3KBP1, ERAS, ZNF81, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, MAP3K15, SPACA5, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, TBC1D25, OTC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FOXP3, CDK16, MBTPS2, PDHA1, PDK3, CFP, PHEX, PHKA2, PLP2, FTHL17, POLA1, NDUFB11, PPEF1, BCOR, OTUD5, KRBOX4, TXLNG, PRRG1, CHST7, GRIPAP1, ZNF630, MID1IP1, RBBP7, RBM3, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, ZNF674, NA, WDR13, PORCN, SMS, SSX1, SSX5, SCARNA23, CDKL5, SUV39H1, SYN1, SYP, DYNLT3, TFE3, TIMP1, TSPAN7, LINC01545, LOC729609, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 ZNF41, ZNF157, CACNA1F, APOO, CXorf36, MAGIX, CXorf21, EFHC2, KLHL15, PPP1R2P9, USP11, USP9X, RBM10, TMEM47, SRPX, UXT, SLC9A7, INE1, CASK, PPP1R3F, CCDC120, RGN, REPS2, SLC38A5, MED14, SYTL5, PCYT1B, JADE3) 0.0959320710096556 141 0.049040161983168 0.454173510891326 14758 0.11491781871281 1 1 0 -10.444156404012 LTS-010 NA NA NA NA LTS-010 chrX 49143289 51075841 1932553 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, NUDT10, GAGE1, GAGE2C, GAGE4, GAGE2E, USP27X, MIR188, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, MIR532, MIR660, GAGE12J, GAGE2D, GAGE2A, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, PAGE4) 0.222 1 NA 0.478484107577439 932 0.119310165226929 1 1 0 -6.79438791205119 LTS-010 chrX 51075842 56593503 5517662 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, RIBC1, USP51, XAGE3, XAGE5, NUDT10, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, SPANXN5, PFKFB1, GPR173, GNL3L, FAM120C, NUDT11, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, FAM104B, PAGE5, MAGED1) 0.183950614761231 31 0.103666991667022 0.453167179325646 3696 0.11179959179929 1 1 0 -8.14909580798032 LTS-010 chrX 56593504 56761036 167533 * LINC01420 NA 0 NA 0.827 1 NA NA NA NA NA LTS-010 chrX 56761037 57146035 384999 * c(SPIN3, UQCRBP1, LINC01420) 0.482 1 NA 0.805992222815874 29 0.113212277180673 2 2 0 -5.81939853522031 LTS-010 chrX 57146036 57937169 791134 * c(FAAH2, ZXDB, SPIN2B, SPIN2A, ZXDA) NA 0 NA 0.845946147398854 343 0.164587287717891 2 NA NA -5.94775393789341 LTS-010 chrX 61999880 67944856 5944977 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, YIPF6, ZC3H12B, AR, MIR223, MSN, OPHN1, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, LINC01278, STARD8, HEPH) 0.479 1 NA 0.827674382637818 1903 0.181355028382703 2 2 0 -6.41770183842019 LTS-010 chrX 67944857 73064060 5119204 * c(MIR676, CDX4, MAP2K4P1, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, SNX12, RGAG4, NHSL2, PABPC1L2A, DGAT2L6, RAB41, IGBP1, IL2RG, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, CITED1, NAP1L2, NONO, P2RY4, PDZD11, PHKA1, PIN4, CHIC1, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, BCYRN1, RPS4X, PJA1, PABPC1L2B, NAP1L6, FAM226B, TAF1, XIST, OGT, SLC7A3, ZMYM3, NA NA NA NA NA NA NA NA NA LTS-010 TSIX, ACRC, STARD8, MED12) 0.425353802476498 25 0.0527930550988164 0.80921885869962 4225 0.180495381783179 2 1 1 -7.12947677764065 LTS-010 NA NA NA NA LTS-010 chrX 73064061 73068583 4523 * XIST NA 0 NA 0.50083789642876 86 0.0710678266032681 1 NA NA -5.77962126041482 LTS-010 chrX 73068584 117044114 43975531 * c(MIR374B, ARMCX4, UBE2DNL, LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, FTX, MIR764, TRPC5OS, MIR4328, MIR4329, MIR374C, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, CYSLTR1, TMSB15A, MID2, CHM, SLC6A14, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, COX7B, PIH1D3, MUM1L1, FAM199X, APOOL, HDX, UPRT, MAGEE2, RBMXL3, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, AMOT, ZDHHC15, TCEAL6, H2BFWT, DCX, TIMM8A, FAM46D, DIAPH2, NA NA NA NA NA NA NA NA NA LTS-010 DRP2, TSC22D3, AGTR2, CT83, ZCCHC5, NRK, TMEM31, ACSL4, ABCB7, KCNE5, CENPI, BRWD3, IL1RAPL2, BEX3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, RAB40AL, LPAR4, H2BFM, LOC286437, TTC3P1, FAM133A, TMSB15B, GUCY2F, RPA4, HNRNPH2, HTR2C, KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, SATL1, ZCCHC16, LHFPL1, IL13RA2, ZCCHC13, ARL13A, SLC25A53, LINC00890, XKRX, GLRA4, PGAM4, XRCC6P5, MIR374A, NAP1L3, MIR384, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 PAK3, TBX22, RLIM, TCEAL9, RAB9B, LUZP4, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, CPXCR1, PLP1, PLS3, ATP7A, TAF7L, ARMCX6, POU3F4, ATRX, NUP62CL, TBC1D8B, CXorf57, RBM41, JPX, MIR448, BEX1, NXT2, NXF5, NXF4, NXF3, KLHL4, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, RGAG1, LRCH2, MAGEE1, TMEM35A, RPL36A, TNMD, BRDTP1, ZCCHC18, SH3BGRL, ARMCX5, SLC16A2, MIR545, SNORA35, SERPINA7, SNORD96B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 MIR421, BTK, TDGF1P3, TSPAN6, TRPC5, XIST, ZNF711, HMGN5, RNF128, MORC4, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, CAPN6, MAGT1, TMEM164, ZMAT1, GPR174, BEX2, IRS4, TCEAL3, FGF16, KLHL13, TGIF2LX, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, SYTL4, ITM2A, MORF4L2, GPRASP1, ARMCX2, AMMECR1) 0.450276211312374 117 0.045083047120135 0.814875120720951 13789 0.359590186170229 2 1 1 -7.52985748277992 LTS-010 NA NA NA NA LTS-010 chrX 117044115 117053438 9324 * KLHL13 NA 0 NA 0.705 1 NA NA NA NA NA LTS-010 chrX 117053439 136113464 19060026 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, GPC4, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, FIRRE, GRIA3, MCTS1, NA NA NA NA NA NA NA NA NA LTS-010 C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, IGSF1, IL13RA1, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.438911894132175 76 0.0576780340687431 0.782267980270338 8736 0.35154405442883 2 1 1 -6.79932468637307 LTS-010 NA NA NA NA LTS-010 chrX 136113465 138444578 2331114 * c(FGF13-AS1, LINC00889, FGF13, MIR504, ZIC3, GPR101) NA 0 NA 0.826346133953189 198 0.158528371442213 2 NA NA -6.10442131988614 LTS-010 chrX 138444579 138633280 188702 * c(F9, SRD5A1P1) 0.38 1 NA 1.23519835622804 23 0.217040177697996 3 3 0 -5.7956441291416 LTS-010 chrX 138633281 142968375 4335095 * c(MIR320D2, CDR1, SLITRK4, SPANXN3, MAGEC3, NA, NA, F9, LDOC1, ATP11C, LINC00632, CXorf66, LOC389895, UBE2NL, MCF2, SPANXN4, SPANXN2, MAGEC2, MIR505, SPANXA2-OT1, SPANXC, SOX3, MAGEC1) 0.314499704115831 22 0.0504529269269666 1.19413764860764 1107 0.359989884215715 3 2 1 -7.08363577158673 LTS-010 chrX 144176624 145076404 899781 * c(MIR890, MIR888, SPANXN1, SLITRK2, TMEM257) 0.468274724821544 5 0.015546703830716 0.880583685373065 244 0.190497744544788 2 1 1 -8.15580002741253 LTS-010 chrX 145076405 145078106 1702 * character(0) NA 0 NA 1.017 1 NA NA NA NA NA LTS-010 chrX 145078107 154563642 9485536 * c(FMR1-AS1, MIR891B, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, FMR1, AFF2, G6PD, GABRA3, GABRE, NA NA NA NA NA NA NA NA NA LTS-010 OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IDS, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MPP1, MTCP1, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-010 FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, IKBKG, MTMR1, FATE1, FAM50A, CXorf40A, FAM58A, GPR50) 0.321872898979472 128 0.0534375785674239 1.17315207161784 7862 0.318280618734452 3 2 1 -7.06505836031702 LTS-010 NA NA NA NA LTS-010 chrX 154563643 154563741 99 * CLIC2 NA 0 NA 0.929 1 NA NA NA NA NA LTS-010 chrX 154563742 154579156 15415 * CLIC2 0.487 1 NA 0.613308265900929 19 0.491618558455175 2 2 0 -5.76622339338687 LTS-010 chrX 154579157 154580369 1213 * character(0) NA 0 NA 0.319033924113922 20 0.0731768585796012 1 NA NA -5.7752283931409 LTS-010 chrX 154580370 154774986 194617 * TMLHE NA 0 NA 1.80081099052809 39 5.07705491115176 5 NA NA -5.76441072304451 LTS-010 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.165858570387951 25 0.189722059866532 0 NA NA -8.81851825764798 LTS-010 chrY 13309514 13309630 117 * character(0) 0.3 1 NA 0.268669538338658 3 0.145001149420732 1 1 0 -5.76509330656247 LTS-010 chrY 13309631 21154426 7844796 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.426 1 NA 0.479114160189277 19 0.50628786047151 1 1 0 -6.03484082578783 LTS-010 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.61727711130127 3 0.301376840516985 5 NA NA -5.76441629587471 LTS-010 chr1 65893 777471 711579 * c(LOC100288069, LINC01128, LOC729737, OR4F5, LINC00115) 0 1 NA 1.27285840713442 31 0.706748534008087 4 4 0 -5.7655031672706 LTS-011 chr1 777472 1370897 593426 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LOC148413, DVL1, LINC01342, TTLL10, NOC2L, FAM41C, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, TNFRSF4, CPTP, CCNL2, TAS1R3, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.362681848671309 36 0.051505586073992 1.03384615907093 2140 0.429870262783432 3 2 1 -6.80718767795128 LTS-011 chr1 1370898 1593131 222234 * c(MIB2, ATAD3C, SSU72, TMEM240, ATAD3A, FNDC10, VWA1, SLC35E2B, ATAD3B, MMP23B, CDK11B) 0.362593712220959 15 0.146447780389299 0.776257305109024 805 0.453524073895797 2 1 1 -6.77834560048626 LTS-011 chr1 1593132 1596067 2936 * c(SLC35E2B, CDK11B) NA 0 NA 0.241554071681785 78 0.255738677290454 0 NA NA -5.77115295044941 LTS-011 chr1 1596068 1596425 358 * c(SLC35E2B, CDK11B) NA 0 NA 0.783 1 NA NA NA NA NA LTS-011 chr1 1596426 1608309 11884 * c(SLC35E2B, CDK11B) 0.345497908877967 2 0.0395979797464467 1.00578681727883 59 0.459190560418355 12 8 4 -6.77952280098004 LTS-011 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.008 1 NA NA NA NA NA LTS-011 chr1 1630372 1646764 16393 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 0.322935325970229 119 0.239048235051212 0 NA NA -5.77201565459458 LTS-011 chr1 1646765 1646772 8 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.329 1 NA NA NA NA NA LTS-011 chr1 1646773 1656669 9897 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.426805408354608 11 0.0850873348122653 0.784371949400577 40 0.34983303618316 2 1 1 -6.78223586452757 LTS-011 chr1 1656670 1659631 2962 * c(SLC35E2B, SLC35E2) 0.473 1 NA 0.268417587805615 41 0.240533000626201 0 0 0 -5.76920355584187 LTS-011 chr1 1659632 2116920 457289 * c(CALML6, FAAP20, GABRD, GNB1, TMEM52, PRKCZ, NADK, SLC35E2B, CFAP74, SLC35E2) 0.425494234067072 36 0.0931906221864199 0.768328180330887 742 0.414730699980611 2 1 1 -6.77496308791022 LTS-011 chr1 2116921 2117425 505 * FAAP20 NA 0 NA 1.156 1 NA NA NA NA NA LTS-011 chr1 2117426 2344064 226639 * c(LOC100129534, RER1, FAAP20, PEX10, SKI, MORN1) 0.458831775670707 3 0.0274286954362276 1.01167309013991 421 0.386232087135318 4 2 2 -8.60933616345652 LTS-011 chr1 2344065 2399031 54967 * character(0) NA 0 NA 0.661 1 NA NA NA NA NA LTS-011 chr1 2399032 2702617 303586 * c(NA, TTC34, LOC115110, FAM213B, HES5, PANK4, MMEL1, TNFRSF14, PLCH2) 0.432052521417237 28 0.094007570335709 0.696504288420249 615 0.34377220421629 2 1 1 -6.82915861805231 LTS-011 chr1 2702618 2704116 1499 * TTC34 NA 0 NA 0.438 1 NA NA NA NA NA LTS-011 chr1 2704117 3355076 650960 * c(TTC34, MIR4251, ACTRT2, LINC00982, PRDM16) 0.402505871036547 3 0.101401840877438 0.492578041082788 291 0.192198201949966 0 0 0 -7.17359059043484 LTS-011 chr1 3355077 6246352 2891276 * c(LINC01134, MIR4689, MIR4417, TPRG1L, CCDC27, DFFB, MEGF6, CHD5, NPHP4, ARHGEF16, LOC284661, C1orf174, SMIM1, WRAP73, AJAP1, TP73-AS1, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, KCNAB2, CEP104) 0.385167833811812 33 0.170106021974888 0.736346028332593 1710 0.417647469572565 2 1 1 -6.83592807223823 LTS-011 chr1 6246353 6246844 492 * RPL22 NA 0 NA 1.227 1 NA NA NA NA NA LTS-011 chr1 6246845 6454452 207608 * c(ACOT7, ICMT, GPR153, RNF207, HES3, RPL22) 0.344696017031517 10 0.133727749966531 1.11134205365386 445 0.514616715068091 4 3 1 -6.74655708016643 LTS-011 chr1 6454453 6472855 18403 * HES2 NA 0 NA 0.491 1 NA NA NA NA NA LTS-011 chr1 6472856 6946380 473525 * c(MIR4252, PHF13, CAMTA1, ZBTB48, HES2, DNAJC11, PLEKHG5, NOL9, TAS1R1, ESPN, TNFRSF25, THAP3, KLHL21) 0.24335953113518 4 0.280282595487721 0.869721354517307 1137 0.62450834320267 2 2 0 -6.73633981811059 LTS-011 chr1 6946381 6947648 1268 * CAMTA1 NA 0 NA 0.748 1 NA NA NA NA NA LTS-011 chr1 6947649 8037732 1090084 * c(UTS2, PARK7, CAMTA1, TNFRSF9, PER3, VAMP3) 0.381533038465946 11 0.140158546588562 0.704499058965437 612 0.428719615457525 2 1 1 -6.81879850247734 LTS-011 chr1 8037733 8044893 7161 * PARK7 NA 0 NA 1.039 1 NA NA NA NA NA LTS-011 chr1 8044894 8938801 893908 * c(PARK7, ENO1, RERE, SLC45A1, ERRFI1) 0.423222938060528 3 0.0464363363470174 0.991502701779816 456 0.382924013324734 2 1 1 -6.99200437690083 LTS-011 chr1 8938802 9005828 67027 * c(ENO1-AS1, ENO1) NA 0 NA 0.491 1 NA NA NA NA NA LTS-011 chr1 9005829 11848759 2842931 * c(APITD1-CORT, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, RBP7, CORT, C1orf127, SLC2A7, DFFA, TMEM201, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, DRAXIN, CENPS, MIR34A, MTHFR, PEX14, PGD, PIK3CD, EXOSC10, CASZ1, CTNNBIP1, AGTRAP, DISP3, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, CA6, GPR157, SPSB1, SLC25A33, LZIC, FBXO44, H6PD) 0.424353034349041 108 0.103542622527247 0.760565433955213 4312 0.362681999520796 2 1 1 -6.81779253627585 LTS-011 chr1 11848760 11867292 18533 * c(CLCN6, MTHFR) 0.425340768644961 2 0.0205060966544099 1.36280834772218 129 0.464345085476317 4 2 2 -7.40615800402184 LTS-011 chr1 11867293 11875835 8543 * CLCN6 NA 0 NA 0.603 1 NA NA NA NA NA LTS-011 chr1 11875836 12721958 846123 * c(NPPA-AS1, MIR4632, CLCN6, AADACL4, NPPA, NPPB, PLOD1, VPS13D, MIIP, SNORA59B, TNFRSF1B, KIAA2013, DHRS3, TNFRSF8, MFN2) 0.417340995507439 33 0.13602113806317 0.776649239019884 1392 0.315335209075437 2 1 1 -6.75116288724676 LTS-011 chr1 12721959 12725922 3964 * AADACL4 NA 0 NA 0.595 1 NA NA NA NA NA LTS-011 chr1 12725923 13882520 1156598 * c(LRRC38, AADACL3, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, C1orf158) 0.380056795857337 37 0.127345460721481 0.543179768024706 409 0.477166446365201 1 1 0 -6.87391318055882 LTS-011 chr1 13882521 13909931 27411 * character(0) NA 0 NA 2.478 1 NA NA NA NA NA LTS-011 chr1 13909932 16112843 2202912 * c(PDPN, CTRC, FHAD1, TMEM51-AS1, PLEKHM2, KAZN, DNAJC16, SLC25A34, TMEM82, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.430500827364325 36 0.134094881712865 0.777455302051552 1747 0.668311025688604 2 1 1 -6.76536770520983 LTS-011 chr1 16112844 16112970 127 * FBLIM1 NA 0 NA 1.755 1 NA NA NA NA NA LTS-011 chr1 16112971 16579584 466614 * c(CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, SPEN, HSPB7, FAM131C, UQCRHL, FBXO42, FBLIM1, FLJ37453, ZBTB17, RSG1) 0 2 0 0.964734312724049 1204 6.51139229358903 0 0 0 -Inf LTS-011 chr1 16579585 16976698 397114 * c(MST1P2, CROCCP3, SZRD1, SPATA21, FBXO42, NBPF1, NECAP2, CROCCP2) 0.360190099033183 22 0.119995391325642 0.760056425786034 406 0.38276158696711 2 1 1 -6.81366821210777 LTS-011 chr1 16976699 16978916 2218 * MST1P2 0.302406543062322 4 0.116614393051058 0.34196404800287 61 0.226284750976707 1 1 0 -6.76681543312774 LTS-011 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.89 1 NA NA NA NA NA LTS-011 chr1 17009684 17046605 36922 * ESPNP 0.356869351237373 18 0.0594815564318517 1.03501113119887 138 0.536196489884359 6 4 2 -6.75845869785753 LTS-011 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.432 1 NA NA NA NA NA LTS-011 chr1 17081542 17083651 2110 * c(MST1L, CROCC) 0.284533338893223 5 0.0435005747088472 0.461268516780956 63 0.335849277693416 5 4 1 -6.7479609895121 LTS-011 chr1 17083652 17420278 336627 * c(MST1L, PADI2, ATP13A2, MFAP2, SDHB, CROCC) 0.389306181024727 50 0.113920638326577 0.911194338555992 660 0.855853744624832 3 2 1 -6.73987563828151 LTS-011 chr1 17420279 17422303 2025 * PADI2 NA 0 NA 0.705 1 NA NA NA NA NA LTS-011 chr1 17422304 18024025 601722 * c(PADI2, PADI4, PADI1, PADI6, PADI3, ARHGEF10L, RCC2) 0.346640228171355 14 0.195112661171567 0.758349745528042 716 0.442932517759648 2 1 1 -6.79056217127905 LTS-011 chr1 18024026 19199453 1175428 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.393903940909559 19 0.144439995433058 0.523032545791712 475 0.430118773674228 1 1 0 -6.94270319887589 LTS-011 chr1 19199454 19427121 227668 * c(MIR4695, IFFO2, UBR4, ALDH4A1) 0.444818845163576 4 0.0165201896679992 1.03636340437274 339 0.406813292684299 4 2 2 -9.28331184393897 LTS-011 chr1 19427122 19428016 895 * UBR4 NA 0 NA 0.671 1 NA NA NA NA NA LTS-011 chr1 19428017 21625613 2197597 * c(LOC100506730, LOC100506801, MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, EIF4G3, CDA) 0.424638730169178 65 0.101430733754617 0.783909737783434 3158 0.341053205470335 2 1 1 -6.77720892047913 LTS-011 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.338 1 NA NA NA NA NA LTS-011 chr1 21749805 21758450 8646 * character(0) 0.340680097469052 5 0.0963576670535355 0.478725489071114 116 0.345473415597435 1 1 0 -6.74858834678194 LTS-011 chr1 21758451 21758460 10 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-011 chr1 21758461 22222849 464389 * c(ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3) 0.407918874582577 38 0.114368415324763 0.789664539334427 1086 0.402263900869713 2 1 1 -6.73595187880932 LTS-011 chr1 22222850 22299742 76893 * HSPG2 NA 0 NA 0.491 1 NA NA NA NA NA LTS-011 chr1 22299743 23285499 985757 * c(MIR4253, MIR4684, CELA3A, EPHA8, EPHB2, CELA3B, LINC00339, WNT4, C1QA, C1QB, C1QC, ZBTB40, CDC42) 0.305605822282901 16 0.176918813772495 0.663359975988771 847 0.402885024904125 1 1 0 -6.77103145889995 LTS-011 chr1 23285500 23286415 916 * character(0) NA 0 NA 0.751 1 NA NA NA NA NA LTS-011 chr1 23286416 24785393 1498978 * c(MIR3115, TCEB3-AS1, MIR378F, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, KDM1A, FUCA1, GALE, MDS2, LOC284632, HMGCL, HTR1D, ID3, ASAP3, PNRC2, PITHD1, NIPAL3, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, C1orf234, LUZP1, ZNF436, STPG1) 0.420759037393218 25 0.132662164915246 0.812878153884241 2426 0.372713460274966 2 1 1 -6.74455785710219 LTS-011 chr1 24785394 24798807 13414 * NIPAL3 0 1 NA 0.787765105691236 125 0.499083964491851 2 2 0 -5.76444311140066 LTS-011 chr1 24798808 26665867 1867060 * c(MIR3917, RCAN3AS, SRRM1, CNKSR1, CD52, RCAN3, PDIK1L, PAQR7, EXTL1, TMEM50A, CLIC4, SYF2, LDLRAP1, CATSPER4, STMN1, NCMAP, PAFAH2, ZNF593, AIM1L, TMEM57, MTFR1L, RSRP1, MAN1C1, NIPAL3, SELENON, RHCE, RHD, LOC646471, CEP85, SLC30A2, AUNIP, FAM110D, SH3BGRL3, TRIM63, RUNX3, UBXN11) 0.279380979841283 18 0.222747813087568 0.853065255558083 2496 0.486266139508077 2 2 0 -6.75753045911044 LTS-011 chr1 26665868 26669195 3328 * AIM1L NA 0 NA 0.507 1 NA NA NA NA NA LTS-011 chr1 26669196 26755284 86089 * c(ZNF683, AIM1L, LIN28A) 0.1307954701919 4 0.245 0.610915195018181 206 0.511004034247101 3 3 0 -6.82696917711666 LTS-011 chr1 26755285 26756227 943 * LIN28A NA 0 NA 0.575523735977182 19 0.267834318604286 1 NA NA -5.76443102847663 LTS-011 chr1 26756228 26759338 3111 * DHDDS NA 0 NA 0.784 1 NA NA NA NA NA LTS-011 chr1 26759339 27180829 421491 * c(MIR1976, HMGN2, PIGV, RPS6KA1, DHDDS, ARID1A, ZDHHC18) 0.411 1 NA 0.850205788621851 615 0.396884654993016 2 2 0 -5.76756362395484 LTS-011 chr1 27180830 28293821 1112992 * c(WASF2, NUDC, FAM46B, KDF1, FAM76A, FGR, WDTC1, STX12, IFI6, AHDC1, SMPDL3B, SFN, GPR3, TRNP1, CD164L2, GPN2, PPP1R8, XKR8, RPA2, GPATCH3, ACTG1P20, SLC9A1, SCARNA1, TMEM222, ZDHHC18, NR0B2, SYTL1, FCN3, MAP3K6, THEMIS2) 0.420716399060149 23 0.101168469833924 0.887581345153544 1910 0.375329923119713 2 1 1 -6.78868545670864 LTS-011 chr1 28293822 29842701 1548880 * c(PTPRU, GMEB1, RCC1, RAB42, EPB41, EYA3, DNAJC8, RNU11, TMEM200B, OPRD1, MECR, YTHDF2, MED18, TRNAU1AP, XKR8, PTAFR, SRSF4, PHACTR4, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1) 0.412704512416562 30 0.119401592241833 0.752825799483517 1748 0.399200688659928 2 1 1 -6.7721916899949 LTS-011 chr1 29842702 29842937 236 * character(0) NA 0 NA 1.114 1 NA NA NA NA NA LTS-011 chr1 29842938 32860094 3017157 * c(FAM229A, MATN1-AS1, MIR4254, MIR4420, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, FABP3, KPNA6, LINC01226, HCRTR1, HDAC1, MTMR9LP, SERINC2, LCK, MATN1, ZCCHC17, BSDC1, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, TINAGL1, MARCKSL1, SNORD103C, SNORD103A, LAPTM5, CCDC28B, NKAIN1, PTP4A2, TSSK3, FAM167B, EIF3I, SPOCD1, SNRNP40, SDC3, PUM1) 0.429411291861194 37 0.110258064742861 0.890172749776802 2861 0.390977421727098 2 1 1 -6.86392273377131 LTS-011 chr1 32860095 32936147 76053 * c(ZBTB8A, ZBTB8B) NA 0 NA 0.548 1 NA NA NA NA NA LTS-011 chr1 32936148 33086746 150599 * c(ZBTB8OS, ZBTB8A, ZBTB8B) NA 0 NA 0.579150267858623 149 0.431489130736533 1 NA NA -5.76540214796738 LTS-011 chr1 33086747 33087016 270 * ZBTB8OS NA 0 NA 1.57 1 NA NA NA NA NA LTS-011 chr1 33087017 33547768 460752 * c(AZIN2, TMEM54, RNF19B, AK2, FNDC5, HPCA, ZBTB8OS, KIAA1522, RBBP4, S100PBP, SYNC, YARS) 0.390895386411362 16 0.119630106996525 0.841809960811562 859 0.353766567227397 2 1 1 -6.74114353316601 LTS-011 chr1 33547769 33841254 293486 * c(MIR3605, AZIN2, A3GALT2, ZNF362, PHC2, TRIM62) NA 0 NA 0.849900771446755 393 0.337658749676058 2 NA NA -5.7673949376888 LTS-011 chr1 33841255 33944742 103488 * c(PHC2, ZSCAN20) NA 0 NA 0.452 1 NA NA NA NA NA LTS-011 chr1 33944743 33985198 40456 * c(CSMD2, ZSCAN20) 0 1 NA 0.665277623805362 123 0.379599826820198 1 1 0 -5.76588013438911 LTS-011 chr1 33985199 34684621 699423 * c(CSMD2, HMGB4, CSMD2-AS1, C1orf94) 0.10812660129261 9 0.218178698420456 0.637693641009156 536 0.465560332540755 2 2 0 -7.07481042350202 LTS-011 chr1 34684622 35184033 499412 * C1orf94 0.456 1 NA 0.760012006534771 13 0.158667811351182 2 2 0 -5.8186516132447 LTS-011 chr1 35184034 35333126 149093 * c(SMIM12, GJB4, GJA4, GJB3, GJB5, DLGAP3) 0.425921798232092 8 0.167248958997401 0.671175478655492 248 0.345512692412867 2 1 1 -6.77245050956756 LTS-011 chr1 35333127 35454484 121358 * c(TMEM35B, DLGAP3, LOC653160, ZMYM6) 0 1 NA 0.693857209729785 169 0.293076390210355 1 1 0 -5.77993193351114 LTS-011 chr1 35454485 35654756 200272 * c(SFPQ, ZMYM1, ZMYM6) NA 0 NA 0.728621674079774 266 0.399330898173865 2 NA NA -5.7735129355224 LTS-011 chr1 35654757 35734797 80041 * c(SFPQ, ZMYM4) NA 0 NA 1.50544435584394 53 0.529033147465791 5 NA NA -5.76479799393419 LTS-011 chr1 35734798 35790842 56045 * ZMYM4 NA 0 NA 0.962 1 NA NA NA NA NA LTS-011 chr1 35790843 36386116 595274 * c(C1orf216, AGO4, NCDN, AGO1, TFAP2E, PSMB2, CLSPN, KIAA0319L, ZMYM4) 0 9 0 0.768566425236208 1093 0.444612216516351 0 0 0 -Inf LTS-011 chr1 36386117 36388080 1964 * AGO1 0.458 1 NA 0.638021989450147 39 0.175738200115277 1 1 0 -5.76451165797536 LTS-011 chr1 36388081 36941254 553174 * c(OSCP1, COL8A2, CSF3R, AGO3, AGO1, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, MRPS15, SH3D21, STK40, LSM10, THRAP3) 0.41365500251298 16 0.121040471881653 0.852924244533258 1103 0.345539370906961 2 1 1 -6.74452664089205 LTS-011 chr1 36941255 36945023 3769 * CSF3R NA 0 NA 0.331 1 NA NA NA NA NA LTS-011 chr1 36945024 37627257 682234 * c(MIR4255, CSF3R, GRIK3) 0 2 0 0.472223725030589 225 0.336231999754232 0 0 0 -Inf LTS-011 chr1 37627258 37940981 313724 * c(LINC01137, ZC3H12A) NA 0 NA 2.859 1 NA NA NA NA NA LTS-011 chr1 37940982 38172820 231839 * c(MIR5581, RSPO1, GNL2, C1orf109, CDCA8, MEAF6, DNALI1, SNIP1, ZC3H12A) 0.429213206716291 27 0.0929954200385597 0.893108848156135 580 0.378519287787092 2 1 1 -6.79115339196119 LTS-011 chr1 38172821 38173951 1131 * CDCA8 NA 0 NA 0.401 1 NA NA NA NA NA LTS-011 chr1 38173952 38266830 92879 * c(MANEAL, EPHA10, CDCA8) 0.401396664664543 12 0.132250680241133 0.573946066385696 308 0.375892722285273 2 1 1 -6.78061387287701 LTS-011 chr1 38266831 38268616 1786 * c(MANEAL, YRDC) NA 0 NA 1.001 1 NA NA NA NA NA LTS-011 chr1 38268617 45241188 6972572 * c(LOC100129924, NFYC-AS1, KDM4A-AS1, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5584, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, KIF2C, MED8, ERMAP, TMCO2, ZNF684, C1orf122, KLF17, TMEM125, COL9A2, CLDN19, CFAP57, C1orf210, CCDC24, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, SZT2, MACF1, MYCBP, HEYL, RIMKLA, GUCA2A, GUCA2B, LINC01343, C1orf228, ZFP69, BMP8A, INPP5B, SVBP, MIR30C1, MIR30E, MPL, NA NA NA NA NA NA NA NA NA LTS-011 SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, ATP6V0B, POU3F1, TRIT1, RHBDL2, RNF220, PPT1, DMAP1, PTPRF, HIVEP3, RLF, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, EXO5, ELOVL1, ST3GAL3, SLC2A1, ZFP69B, SLC6A9, BMP8B, SNORA55, TIE1, PPIEL, CCDC30, ERI3, C1orf50, TMEM53, AKIRIN1, YRDC, PPCS, HYI, ZMYND12, NT5C1A, MFSD2A, B4GALT2, PABPC4, ARTN, KCNQ4, IPO13, KDM4A, RIMS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-011 CDC20) 0.410758904200373 145 0.120479854757129 0.798257472845949 8550 0.374036331188933 2 1 1 -6.74640515721416 LTS-011 NA NA NA NA LTS-011 chr1 45241189 45287903 46715 * c(PLK3, BTBD19, BEST4, SNORD55, TCTEX1D4, RPS8, PTCH2, SNORD46, SNORD38A, SNORD38B) NA 0 NA 1.14884748375197 284 0.457596018350849 4 NA NA -5.76500634530813 LTS-011 chr1 45287904 46505913 1218010 * c(AKR1A1, TESK2, TOE1, CCDC163, CCDC17, MAST2, MMACHC, IPP, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ZSWIM5, GPBP1L1, RPS15AP10, UROD, HECTD3, HPDL, PIK3R3, PTCH2, EIF2B3) 0.395218462559337 12 0.132471838059219 0.757182091699674 1546 0.340652537154631 2 1 1 -6.76683299288451 LTS-011 chr1 46505914 46877180 371267 * c(TSPAN1, LRRC41, FAAH, NSUN4, LURAP1, POMGNT1, UQCRH, RAD54L, PIK3R3) 0.420999233201455 15 0.125600765845405 0.921373437185647 696 0.375439450570687 2 1 1 -6.77070397032662 LTS-011 chr1 46877181 46978299 101119 * c(DMBX1, FAAH, FAAHP1) 0 1 NA 0.797588891421925 59 0.422617260554702 2 2 0 -5.76454002147087 LTS-011 chr1 46978300 47074774 96475 * c(MKNK1-AS1, DMBX1, KNCN, MOB3C, MKNK1) 0.280985747855206 9 0.217784296954578 0.757615536756624 205 0.692408450493408 2 2 0 -6.74941179666041 LTS-011 chr1 47074775 47078637 3863 * c(MOB3C, MKNK1) 0.485 1 NA 0.863979622608397 23 0.322577024536611 2 2 0 -5.7644913776681 LTS-011 chr1 47078638 47283668 205031 * c(EFCAB14-AS1, MOB3C, CYP4B1, TEX38, ATPAF1, MKNK1, EFCAB14) 0.41575069927719 2 0.0226274169979695 0.899367140423126 414 0.339217468222915 2 1 1 -6.94708157926087 LTS-011 chr1 47283669 47614724 331056 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0.407524640576564 10 0.147382194009694 0.520724547099457 339 0.336738554020944 0 0 0 -6.85642291181873 LTS-011 chr1 47614725 47615016 292 * character(0) NA 0 NA 1.053 1 NA NA NA NA NA LTS-011 chr1 47615017 52375424 4760408 * c(MIR761, LINC00853, PDZK1IP1, CDKN2C, FAF1, OSBPL9, ELAVL4, SLC5A9, EPS15, TTC39A, FOXE3, FOXD2, RNF11, C1orf185, TRABD2B, SKINT1L, NRDC, CMPK1, SPATA6, RAB3B, DMRTA2, STIL, TAL1, BEND5, FOXD2-AS1, AGBL4) 0.358664812856066 28 0.167427450133486 0.787036983597518 2331 0.402066284960626 2 1 1 -6.79264175911115 LTS-011 chr1 52375425 52375752 328 * RAB3B 0 1 NA 0.724570188114259 9 1.84032870705209 2 2 0 -5.76441090838482 LTS-011 chr1 52375753 53453861 1078109 * c(KTI12, CC2D1B, ZCCHC11, GPX7, FAM159A, ZYG11A, ORC1, TXNDC12, ECHDC2, RAB3B, SCP2, COA7, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.26835222302727 10 0.227414672643023 0.755211375872043 1687 0.355024984275375 2 2 0 -6.76710060868849 LTS-011 chr1 53453862 53457498 3637 * SCP2 NA 0 NA 0.388 1 NA NA NA NA NA LTS-011 chr1 53457499 53459590 2092 * SCP2 NA 0 NA 0.345609103863681 39 0.0869899710353368 0 NA NA -5.76777438782997 LTS-011 chr1 53459591 53459613 23 * SCP2 NA 0 NA 0.599 1 NA NA NA NA NA LTS-011 chr1 53459614 53459885 272 * SCP2 0 1 NA 0.758822840681256 5 1.10129619085875 2 2 0 -5.76441077996797 LTS-011 chr1 53459886 53537266 77381 * c(PODN, SCP2) 0.448 1 NA 0.795219888604357 121 0.362798084338934 2 2 0 -5.76458916310124 LTS-011 chr1 53537267 53927262 389996 * c(LOC100507564, PODN, CPT2, SLC25A3P1, MAGOH, C1orf123, DMRTB1, SLC1A7, LRP8) 0.457429482481613 25 0.0466505448342603 0.851586190755313 496 0.368219164177238 2 1 1 -7.47434091716213 LTS-011 chr1 53927263 53932814 5552 * DMRTB1 0 1 NA 0.789553780236499 23 0.487662594755955 2 2 0 -5.76442247146617 LTS-011 chr1 53932815 55446559 1513745 * c(MROH7-TTC4, MIR4781, LRRC42, TCEANC2, GLIS1, LEXM, DHCR24, DIO1, TMEM61, CDCP2, SSBP3, PARS2, ACOT11, FAM151A, MROH7, LDLRAD1, MRPL37, HSPB11, YIPF1, TTC22, NDC1, CYB5RL, DMRTB1, TTC4, TMEM59) 0.290832526774809 28 0.193840686235402 0.788573337515844 1722 0.386315023167028 2 2 0 -6.77129868188934 LTS-011 chr1 55446560 55446697 138 * TMEM61 0.443 1 NA 0.803776066912114 5 0.419774701476875 2 2 0 -5.76441019990255 LTS-011 chr1 55446698 59148219 3701522 * c(LOC100507634, MIR4422, MYSM1, OMA1, DAB1, C1orf168, TMEM61, USP24, PCSK9, TACSTD2, PRKAA2, C8A, C8B, BSND, PLPP3) 0.404749107742487 47 0.101536717018366 0.821955585108972 1601 0.39939293311555 2 1 1 -6.73490939861398 LTS-011 chr1 59148220 59150808 2589 * MYSM1 NA 0 NA 1.838 1 NA NA NA NA NA LTS-011 chr1 59150809 59364961 214153 * c(LINC01135, MYSM1, JUN) 0.478152765803387 2 0.0176776695296637 1.47544866773421 125 0.59335655928928 6 3 3 -11.3652546683814 LTS-011 chr1 59364962 59787160 422199 * c(LINC01135, FGGY, HSD52) NA 0 NA 0.865 1 NA NA NA NA NA LTS-011 chr1 59787161 61331114 1543954 * c(MIR4711, C1orf87, CYP2J2, HOOK1, FGGY) 0.443705923354583 3 0.0335608899365517 0.82876425614526 408 0.314257854950029 2 1 1 -7.53180194608672 LTS-011 chr1 61331115 61543140 212026 * NFIA NA 0 NA 3.153 1 NA NA NA NA NA LTS-011 chr1 61543141 61928329 385189 * NFIA 0.489 1 NA 1.1756682924682 231 0.514721470769674 4 4 0 -5.76607290555862 LTS-011 chr1 61928330 67879003 5950674 * c(INSL5, MIR3117, MIR3671, MIR4794, PATJ, UBE2U, IL23R, KANK4, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, LEPR, C1orf141, MIR101-1, MGC34796, NFIA, ROR1, PDE4B, PGM1, L1TD1, LEPROT, RAVER2, CACHD1, MIER1, USP1, DLEU2L, WDR78, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.414416881505992 88 0.112946959560588 0.821693033401879 4089 0.401794704740275 2 1 1 -6.74217421230839 LTS-011 chr1 67879004 68154079 275076 * c(GADD45A, SERBP1) NA 0 NA 1.40832585702334 83 0.548918094387646 5 NA NA -5.76461082299824 LTS-011 chr1 68154080 68167121 13042 * character(0) NA 0 NA 0.906 1 NA NA NA NA NA LTS-011 chr1 68167122 70588766 2421645 * c(GNG12-AS1, MIR1262, PIN1P1, DEPDC1, GNG12, LRRC7, RPE65, WLS, DIRAS3) 0.46007010152885 11 0.0473282541022129 0.756308239961975 724 0.337799573956572 2 1 1 -7.58072878212606 LTS-011 chr1 70588767 70887422 298656 * c(HHLA3, CTH, LRRC40, LRRC7, ANKRD13C, SRSF11) 0.359400161442466 4 0.241230698709762 0.997887402201176 379 0.377746326457599 3 2 1 -6.73841926942059 LTS-011 chr1 70887423 70889931 2509 * CTH NA 0 NA 0.405 1 NA NA NA NA NA LTS-011 chr1 70889932 71531499 641568 * c(ZRANB2-AS1, CTH, PTGER3, ZRANB2) 0.286220076479241 3 0.272538682269753 0.617148543544705 312 0.214555892427471 1 1 0 -6.74885264748225 LTS-011 chr1 71531500 71532445 946 * c(ZRANB2-AS1, ZRANB2) NA 0 NA 1.346 1 NA NA NA NA NA LTS-011 chr1 71532446 71546984 14539 * c(ZRANB2-AS1, MIR186, ZRANB2) NA 0 NA 1.43563360473335 45 0.484279249936637 5 NA NA -5.76441013479993 LTS-011 chr1 71546985 71868600 321616 * ZRANB2-AS2 NA 0 NA 0.744 1 NA NA NA NA NA LTS-011 chr1 71868601 75699765 3831165 * c(FPGT-TNNI3K, NEGR1-IT1, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, NEGR1, LHX8, TNNI3K, FPGT) 0.394404594123708 24 0.156764009613638 0.677070209730355 1194 0.364921798768018 1 1 0 -7.0493372634151 LTS-011 chr1 75699766 85656428 9956663 * c(PIGK, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, WDR63, ASB17, SAMD13, CTBS, MGC27382, SLC44A5, USP33, ADGRL2, LPAR3, MCOLN2, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, ACADM, MIGA1, UOX, LINC01555, MSH4, GIPC2, MCOLN3, PRKACB, PTGFR, DNASE2B, RABGGTB, ADGRL4, SNORD45C, TTLL7, RPF1, ST6GALNAC5, SYDE2, FUBP1, NEXN) 0.390761323368017 54 0.144446074414283 0.797515394736427 3633 0.394627731241423 2 1 1 -6.75166250749561 LTS-011 chr1 85656429 85665847 9419 * SYDE2 NA 0 NA 1.391 1 NA NA NA NA NA LTS-011 chr1 85665848 86174187 508340 * c(C1orf52, DDAH1, CYR61, ZNHIT6, LOC646626, SYDE2, BCL10) 0.460404133983445 2 0.0360624458405139 1.11182012183452 373 0.477174971578676 4 2 2 -7.99889556891527 LTS-011 chr1 86174188 86194898 20711 * character(0) NA 0 NA 0.662 1 NA NA NA NA NA LTS-011 chr1 86194899 92263077 6068179 * c(LINC01364, GBP4, GBP5, CLCA1, GBP6, HFM1, CLCA4, LRRC8B, COL24A1, GBP1, GBP2, GBP3, ZNF326, GTF2B, LINC01140, BARHL2, GBP7, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, SH3GLB1, LRRC8D, PKN2, KYAT3, ODF2L, TGFBR3, LOC729930, CDC7, ZNF644, LRRC8C, LMO4, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.434924014132521 53 0.0961940618367684 0.848030661508709 3350 0.436487437452745 2 1 1 -6.83419310386013 LTS-011 chr1 92263078 92327010 63933 * TGFBR3 NA 0 NA 0.351 1 NA NA NA NA NA LTS-011 chr1 92327011 92709849 382839 * c(KIAA1107, EPHX4, BTBD8, C1orf146, BRDT, TGFBR3) 0.256575619684493 5 0.254854468275524 0.634713816751983 335 0.365395688787124 1 1 0 -6.78143637700904 LTS-011 chr1 92709850 97543764 4833915 * c(MIR760, LOC100129046, CCDC18-AS1, TMEM56-RWDD3, GLMN, CNN3, SLC44A3, TMEM56, DPYD, DR1, ALG14, F3, MTF2, ABCA4, RWDD3, GFI1, SNORA66, GCLM, DNTTIP2, CCDC18, C1orf146, FAM69A, FLJ31662, TMED5, FNBP1L, PTBP2, ABCD3, SNORD21, RPL5, LOC729970, EVI5, RPAP2, BCAR3, ARHGAP29) 0.406314392896945 53 0.147188309330202 0.896664693742524 2678 0.412596688044211 2 1 1 -6.89131156198399 LTS-011 chr1 97543765 97543847 83 * DPYD NA 0 NA 0.585 1 NA NA NA NA NA LTS-011 chr1 97543848 100389473 2845626 * c(LOC100129620, MIR2682, DPYD-AS1, PLPPR5, AGL, DPYD, FRRS1, MIR137HG, MIR137, SNX7, PALMD, LOC729987, PLPPR4) 0.401404060833369 2 0.105358910396796 0.69402874197234 797 0.309611854450267 2 1 1 -7.15081329372425 LTS-011 chr1 100389474 110199830 9810357 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, HENMT1, OLFM3, ATXN7L2, C1orf194, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, FNDC7, SASS6, AGL, S1PR1, CELSR2, EXTL2, NTNG1, WDR47, CLCC1, SLC35A3, AKNAD1, AMPD2, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM2, GSTM4, GPSM2, SLC25A24, MYBPHL, MIR197, DPH5, GPR88, TRMT13, PRPF38B, PRMT6, RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, NA NA NA NA NA NA NA NA NA LTS-011 MFSD14A, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, VCAM1, GPR61, PSRC1, CDC14A, RTCA, DNAJA1P5) 0.414019652866263 84 0.12399364955145 0.848997711181765 5029 0.449891568306183 2 1 1 -6.79140770380235 LTS-011 NA NA NA NA LTS-011 chr1 110199831 110199999 169 * c(GSTM2, GSTM4) NA 0 NA 0.633 1 NA NA NA NA NA LTS-011 chr1 110200000 110279998 79999 * c(GSTM1, GSTM2, GSTM3, GSTM4, GSTM5) 0.420417534143526 13 0.0531075348365018 0.570115422836009 295 0.280854506829938 0 0 0 -6.87664536823316 LTS-011 chr1 110279999 110837769 557771 * c(AHCYL1, CSF1, UBL4B, ALX3, GSTM3, KCNC4, SLC6A17, LOC440600, EPS8L3, STRIP1) 0.429625897590819 17 0.0773215212412354 0.808536529848825 772 0.38041887071873 2 1 1 -6.80683729444434 LTS-011 chr1 110837770 110838061 292 * LOC440600 NA 0 NA 1.048 1 NA NA NA NA NA LTS-011 chr1 110838062 110921416 83355 * c(LOC440600, RBM15, SLC16A4) 0.477624655078012 2 0.0155563491861041 1.22564539983563 130 0.555399442068902 4 2 2 -11.9451160635998 LTS-011 chr1 110921417 110921515 99 * SLC16A4 NA 0 NA 0.859 1 NA NA NA NA NA LTS-011 chr1 110921516 111690641 769126 * c(LAMTOR5-AS1, CEPT1, LAMTOR5, DRAM2, KCNA2, KCNA3, KCNA10, LRIF1, CYMP, PROK1, SLC16A4, CD53) 0.386471629276225 7 0.173751601568501 0.648495249183786 498 0.383083018417184 1 1 0 -6.81835478820292 LTS-011 chr1 111690642 111701963 11322 * CEPT1 NA 0 NA 0.863 1 NA NA NA NA NA LTS-011 chr1 111701964 111772602 70639 * c(CEPT1, CHI3L2, DENND2D) 0.107404788470621 3 0.219393102292058 1.11424629545995 136 0.698544766805204 6 6 0 -6.74878183693427 LTS-011 chr1 111772603 111773371 769 * CHI3L2 NA 0 NA 0.315 1 NA NA NA NA NA LTS-011 chr1 111773372 111863229 89858 * c(CHI3L2, CHIAP2, CHIA) 0.419502102024923 9 0.0409362648244534 0.562993845704768 142 0.266646340499936 0 0 0 -6.9224876569392 LTS-011 chr1 111863230 111888890 25661 * character(0) NA 0 NA 1.028 1 NA NA NA NA NA LTS-011 chr1 111888891 116948712 5059822 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, BCAS2, AP4B1, PHTF1, DDX20, MAB21L3, PIFO, C1orf162, ADORA3, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, SLC22A15, CTTNBP2NL, FAM212B, OLFML3, RAP1A, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, NA NA NA NA NA NA NA NA NA LTS-011 SIKE1, VANGL1, CAPZA1, CASQ2, ATP1A1-AS1, LRIG2) 0.410750322467856 117 0.124058429613425 0.828527690341354 4894 0.424213599524819 2 1 1 -6.74154646877698 LTS-011 NA NA NA NA LTS-011 chr1 116948713 117119271 170559 * c(IGSF3, ATP1A1-AS1, CD58) 0 1 NA 0.915686418023137 127 0.594486867639249 3 3 0 -5.76782383768407 LTS-011 chr1 117119272 117158690 39419 * IGSF3 0.244931025227679 11 0.0168630850191665 1.07652686882138 105 0.511043427865808 2 2 0 -6.74116155393526 LTS-011 chr1 117158691 117297327 138637 * c(MIR320B1, IGSF3, CD2) 0.488 1 NA 0.619975622278168 53 0.210800893477367 1 1 0 -5.7653919184856 LTS-011 chr1 117297328 118170988 873661 * c(MIR942, MAN1A2, FAM46C, PTGFRN, VTCN1, TRIM45, TTF2, CD2, CD101) 0.41561706056059 18 0.0698068530448562 0.861478920587439 943 0.382072383062547 2 1 1 -6.76646022318143 LTS-011 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.472 1 NA NA NA NA NA LTS-011 chr1 118319311 118321106 1796 * character(0) NA 0 NA 0.31973678245392 43 0.141653188076151 0 NA NA -5.76701390304549 LTS-011 chr1 118321107 118412057 90951 * GDAP2 NA 0 NA 0.588 1 NA NA NA NA NA LTS-011 chr1 118412058 120460418 2048361 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.404244216892788 48 0.116711432647527 0.684693091753375 1415 0.28970515564748 2 1 1 -7.1386196943661 LTS-011 chr1 120460419 120461060 642 * NOTCH2 NA 0 NA 1.114 1 NA NA NA NA NA LTS-011 chr1 120461061 120529742 68682 * NOTCH2 0.441400697531321 2 0.051618795026618 0.949042303580928 183 0.304529575205732 2 1 1 -7.06864587507127 LTS-011 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.191 1 NA NA NA NA NA LTS-011 chr1 120534071 120538700 4630 * NOTCH2 0.348435291744042 3 0.0595007002759912 0.45226602816941 139 0.934289109109981 12 8 4 -6.74458831275189 LTS-011 chr1 120538701 120538706 6 * NOTCH2 NA 0 NA 0.623 1 NA NA NA NA NA LTS-011 chr1 120538707 121116733 578027 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.335217960090918 15 0.103261803199441 0.735464359477798 120 0.436270321976564 1 1 0 -6.80501760930407 LTS-011 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.64077750115097 61 0.333559815135493 1 NA NA -5.76772548151665 LTS-011 chr1 143912360 144013853 101494 * FAM72D 0.249 1 NA 0.932386900739366 5 0.412018567542775 3 3 0 -5.76734898843259 LTS-011 chr1 144013854 145136562 1122709 * c(NBPF20, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.367570946394376 69 0.0977905664413009 0.83061652439799 617 0.447476712133336 2 1 1 -6.8094816730835 LTS-011 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.113 1 NA NA NA NA NA LTS-011 chr1 145136925 145139107 2183 * NBPF20 NA 0 NA 0.407315455558917 64 0.280068897419166 0 NA NA -5.76441805959496 LTS-011 chr1 145139108 145282020 142913 * c(NBPF10, NBPF20, NOTCH2NL) 0.208398430423775 2 0.0763675323681471 1.02965118323026 56 0.615197601028879 3 3 0 -6.74869497454788 LTS-011 chr1 145282021 145416556 134536 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) 0.295812716798069 13 0.0801993509788945 0.532876166652287 202 0.853053235253374 1 1 0 -6.82089830943614 LTS-011 chr1 145416557 145416562 6 * c(NBPF10, NBPF20, HFE2) NA 0 NA 0.924 1 NA NA NA NA NA LTS-011 chr1 145416563 145509388 92826 * c(NBPF10, NBPF20, TXNIP, LIX1L, HFE2, ANKRD34A, POLR3GL, RBM8A) NA 0 NA 1.32744112126845 318 0.603102926055167 4 NA NA -5.76533563991268 LTS-011 chr1 145509389 145511249 1861 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.592938404892858 51 0.269487461238377 1 NA NA -5.76441736151669 LTS-011 chr1 145511250 145511353 104 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.945 1 NA NA NA NA NA LTS-011 chr1 145511354 145706867 195514 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115, ITGA10, PEX11B, RBM8A) 0.37392257650884 17 0.115267910436819 1.0381855619633 796 0.438992427589217 3 2 1 -6.73537882137147 LTS-011 chr1 145706868 145746977 40110 * c(NBPF10, NBPF20, CD160, PDZK1) NA 0 NA 0.709 1 NA NA NA NA NA LTS-011 chr1 145746978 146509890 762913 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.284439176402126 6 0.167972219925399 0.605292349075609 138 0.419178691572109 1 1 0 -6.77024593448726 LTS-011 chr1 146509891 147230772 720882 * c(LINC00624, PDIA3P1, FMO5, GJA5, ACP6, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.387344097565319 20 0.109458716081981 0.97349523944491 654 0.458591439310758 3 2 1 -6.73974806532025 LTS-011 chr1 147230773 149764234 2533462 * c(FCGR1CP, MIR5087, FCGR1A, NBPF14, GJA5, GJA8, NBPF15, LINC01138, LOC388692, HIST2H2BF, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.433 1 NA 0.654274063204806 208 0.356797003529993 1 1 0 -5.83393405461991 LTS-011 chr1 149764235 149764249 15 * HIST2H2BF NA 0 NA 1.099 1 NA NA NA NA NA LTS-011 chr1 149764250 149871841 107592 * c(HIST2H2AB, HIST2H2BC, HIST2H2BF, BOLA1, HIST2H3D, HIST2H2AC, HIST2H2BE) 0.372 1 NA 2.02593814278526 91 0.685981891565335 8 8 0 -5.76444342896557 LTS-011 chr1 149871842 150255582 383741 * c(SF3B4, MTMR11, VPS45, CIART, CA14, BOLA1, APH1A, PLEKHO1, OTUD7B, C1orf54, ANP32E, SV2A) 0.283099430007268 6 0.154333945283164 1.15852212165946 879 0.659421404311235 5 4 1 -6.75727130063652 LTS-011 chr1 150255583 150255676 94 * CIART NA 0 NA 0.934 1 NA NA NA NA NA LTS-011 chr1 150255677 150486325 230649 * c(CIART, ECM1, RPRD2, MRPS21, TARS2, PRPF3) 0.353390631489824 14 0.120023349376713 0.941148196599215 553 0.421038414513517 3 2 1 -6.76944106878133 LTS-011 chr1 150486326 150522483 36158 * c(FALEC, ADAMTSL4) NA 0 NA 2.144 1 NA NA NA NA NA LTS-011 chr1 150522484 150596221 73738 * c(MIR4257, ENSA, MCL1, ADAMTSL4) 0.397739282089858 4 0.0548604289690362 1.65429571747268 313 4.44001487545527 7 4 3 -6.73370184784474 LTS-011 chr1 150596222 150596340 119 * ENSA NA 0 NA 1.14 1 NA NA NA NA NA LTS-011 chr1 150596341 151271429 675089 * c(TNFAIP8L2-SCNM1, SEMA6C, MLLT11, GABPB2, BNIPL, CTSK, CTSS, ENSA, TMOD4, CERS2, LYSMD1, ARNT, PI4KB, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMD4, ZNF687, PRUNE1, VPS72, SCNM1, TNFAIP8L2, PIP5K1A, HORMAD1, ANXA9, SETDB1) 0.393103520211101 33 0.0961324350870068 0.951978042582552 2079 0.457018857111289 3 2 1 -6.75215973812976 LTS-011 chr1 151271430 151512895 241466 * c(POGZ, PI4KB, PSMB4, CGN, RFX5, TUFT1, SELENBP1) 0.32778496813152 6 0.163295641909595 1.1266962121888 592 0.486970848234852 4 3 1 -6.73757734951282 LTS-011 chr1 151512896 151538788 25893 * c(MIR554, TUFT1) 0 1 NA 1.4023484995417 39 0.806469231144453 5 5 0 -5.76442320773726 LTS-011 chr1 151538789 151778541 239753 * c(TDRKH, CELF3, RIIAD1, LINGO4, OAZ3, MRPL9, TUFT1, SNX27) 0.157287193377867 10 0.219538429943876 1.03853529023432 590 0.603750498999986 4 4 0 -6.74452494836844 LTS-011 chr1 151778542 152009532 230991 * c(LOC100132111, C2CD4D, THEM4, THEM5, RORC, S100A10, S100A11) NA 0 NA 1.10736716830573 291 0.533822580395146 3 NA NA -5.76763548545626 LTS-011 chr1 152009533 152056513 46981 * character(0) NA 0 NA 0.637 1 NA NA NA NA NA LTS-011 chr1 152056514 152192395 135882 * c(TCHHL1, RPTN, HRNR, TCHH) 0.493 1 NA 0.652237938917853 305 0.227265981525899 1 1 0 -5.77295617581506 LTS-011 chr1 152192396 153431593 1239198 * c(C1orf68, PGLYRP3, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.32095658393761 39 0.134422491450751 0.578973591227419 1277 0.406437006441254 1 1 0 -6.74332572441179 LTS-011 chr1 153431594 153507059 75466 * S100A7 NA 0 NA 1.095 1 NA NA NA NA NA LTS-011 chr1 153507060 153973471 466412 * c(JTB, SLC27A3, S100A16, CREB3L4, CRTC2, SNAPIN, CHTOP, SLC39A1, ILF2, NPR1, S100A14, GATAD2B, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, INTS3, NUP210L, DENND4B) 0.402999310659596 19 0.105653715516016 1.15464773176272 1501 0.473528158855841 4 2 2 -6.7378005162942 LTS-011 chr1 153973472 153973474 3 * NUP210L NA 0 NA 0.817 1 NA NA NA NA NA LTS-011 chr1 153973475 154125388 151914 * NUP210L 0.341 1 NA 0.682958987515031 166 0.281399718237025 1 1 0 -5.78084603150692 LTS-011 chr1 154125389 154127356 1968 * NUP210L NA 0 NA 0.956 1 NA NA NA NA NA LTS-011 chr1 154127357 154924429 797073 * c(MIR190B, ADAR, HAX1, PMVK, CHRNB2, TDRD10, SHE, C1orf43, IL6R, KCNN3, C1orf189, UBE2Q1, ATP8B2, PBXIP1, TPM3, AQP10, NUP210L, UBAP2L) 0.348559096470239 25 0.154927047348099 1.0287314942727 1762 0.480738220757263 3 2 1 -6.75912836304334 LTS-011 chr1 154924430 154926010 1581 * PBXIP1 NA 0 NA 1.357 1 NA NA NA NA NA LTS-011 chr1 154926011 155257677 331667 * c(MIR4258, LOC100505666, SCAMP3, FAM189B, CKS1B, CLK2, DCST2, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, GBA, GBAP1, MTX1, MUC1, ZBTB7B, DPM3, LENEP, SLC50A1, PBXIP1, HCN3, SHC1, MIR92B, THBS3, TRIM46, FLAD1, ADAM15, PYGO2) NA 0 NA 1.25222951772032 1692 0.544853570713916 4 NA NA -5.76466302348875 LTS-011 chr1 155257678 155271303 13626 * c(PKLR, HCN3) NA 0 NA 0.678508988622276 123 0.258637756597289 1 NA NA -5.76597356275604 LTS-011 chr1 155271304 155279525 8222 * FDPS NA 0 NA 2.356 1 NA NA NA NA NA LTS-011 chr1 155279526 155580009 300484 * c(FDPS, RUSC1, RUSC1-AS1, MSTO1, ASH1L, ASH1L-AS1, POU5F1P4, MIR555) NA 0 NA 1.02873044575024 513 0.469191315145245 3 NA NA -5.76445992849169 LTS-011 chr1 155580010 155580024 15 * MSTO1 NA 0 NA 0.355 1 NA NA NA NA NA LTS-011 chr1 155580025 155638590 58566 * c(MSTO1, YY1AP1) NA 0 NA 0.605873247170895 145 0.439371857885682 1 NA NA -5.76441013669029 LTS-011 chr1 155638591 155640226 1636 * YY1AP1 NA 0 NA 1.121 1 NA NA NA NA NA LTS-011 chr1 155640227 155716847 76621 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 1.01167879849923 148 0.815559645402271 3 NA NA -5.76441563013176 LTS-011 chr1 155716848 155720060 3213 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.427777212060529 50 0.392116113581949 0 NA NA -5.76447297191551 LTS-011 chr1 155720061 155823445 103385 * c(MSTO2P, GON4L, YY1AP1) 0.125985075052929 2 0.149199530830362 0.735043436753813 224 0.336599914174281 4 4 0 -6.91080623479505 LTS-011 chr1 155823446 155990838 167393 * c(KIAA0907, SYT11, RXFP4, GON4L, RIT1, SSR2, SCARNA4, SNORA80E, ARHGEF2) 0.153449933842986 2 0.229102597104441 1.041579863752 567 0.424757200063888 4 4 0 -6.7491649257316 LTS-011 chr1 155990839 156005053 14215 * character(0) NA 0 NA 0.59 1 NA NA NA NA NA LTS-011 chr1 156005054 156006977 1924 * UBQLN4 NA 0 NA 0.441890728060911 45 0.150357426007349 0 NA NA -5.76495431916359 LTS-011 chr1 156006978 156011372 4395 * UBQLN4 NA 0 NA 1.388 1 NA NA NA NA NA LTS-011 chr1 156011373 156202277 190905 * c(PMF1-BGLAP, PMF1, LAMTOR2, LMNA, UBQLN4, RAB25, SEMA4A, MEX3A, SLC25A44) 0.346507201968609 7 0.05986492732652 1.26841431048444 458 0.530418436443824 4 3 1 -6.78750556414567 LTS-011 chr1 156202278 156203389 1112 * c(PMF1-BGLAP, PMF1) NA 0 NA 0.865 1 NA NA NA NA NA LTS-011 chr1 156203390 156213110 9721 * c(PMF1-BGLAP, PMF1, BGLAP) 0.270443060473951 3 0.210076970021308 0.848193572443208 55 0.458375269339531 2 2 0 -6.74143930843434 LTS-011 chr1 156213111 156215562 2452 * c(PMF1-BGLAP, BGLAP, PAQR6) 0.4 1 NA 0.899770086011923 41 0.265449986102752 2 2 0 -5.76462298973462 LTS-011 chr1 156215563 156643332 427770 * c(C1orf61, NES, GLMP, TSACC, IQGAP3, NAXE, TTC24, SMG5, VHLL, MIR9-1, MEF2D, GPATCH4, RHBG, HAPLN2, BCAN, CCT3, PAQR6, TMEM79) 0.404710574901472 20 0.138576019418566 0.884049030067302 1289 0.369643856618373 2 1 1 -6.74622933691208 LTS-011 chr1 156643333 156644908 1576 * NES NA 0 NA 1.967 1 NA NA NA NA NA LTS-011 chr1 156644909 156737888 92980 * c(NES, CRABP2, HDGF, RRNAD1, PRCC, MRPL24, ISG20L2) 0.412391677622563 4 0.211882829255542 1.14145712942619 314 0.551829709692785 4 2 2 -6.73535727124182 LTS-011 chr1 156737889 156737969 81 * PRCC 0.454 1 NA 0.476 1 NA NA NA NA NA LTS-011 chr1 156737970 158224110 1486141 * c(FCRL1, FCRL3, LRRC71, ETV3, CYCSP52, INSRR, PEAR1, ETV3L, NTRK1, KIRREL, PRCC, LOC646268, MIR765, FCRL2, FCRL5, FCRL4, SH2D2A, CD1A, CD1D, CD5L, ARHGEF11) 0.403738549284595 46 0.131514942851513 0.78312850396999 1996 0.344721538584832 2 1 1 -6.74382742102078 LTS-011 chr1 158224111 159805491 1581381 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, CD1A, CD1B, CD1C, CD1E, AIM2) 0.329400315121834 19 0.20115460581005 0.612058801065948 1599 0.375401723311824 1 1 0 -6.73384326027105 LTS-011 chr1 159805492 159805563 72 * c(C1orf204, SLAMF8) 0 1 NA 5.691 1 NA NA NA NA NA LTS-011 chr1 159805564 160001809 196246 * c(LINC01133, CFAP45, C1orf204, VSIG8, SLAMF8, IGSF9, TAGLN2, SLAMF9, PIGM) 0.44580974201808 10 0.0562602089501195 0.99352248471323 475 0.389053793172345 2 1 1 -7.10218503792519 LTS-011 chr1 160001810 160007289 5480 * KCNJ10 NA 0 NA 0.572 1 NA NA NA NA NA LTS-011 chr1 160007290 160183724 176435 * c(KCNJ9, KCNJ10, ATP1A2, ATP1A4, CASQ1, PEA15, IGSF8) 0.25046696640112 2 0.345775216000222 0.739599490947045 674 0.270776918909641 2 2 0 -6.74616005998103 LTS-011 chr1 160183725 160195544 11820 * c(DCAF8, PEA15) 0.411 1 NA 1.27978246005179 111 0.527197640675821 4 4 0 -5.764453418337 LTS-011 chr1 160195545 161072201 876657 * c(TSTD1, SLAMF6, KLHDC9, COPA, ITLN2, NCSTN, ARHGAP30, LY9, SUMO1P3, NHLH1, DCAF8, F11R, CD244, PFDN2, ITLN1, VANGL2, SLAMF7, PEX19, SLAMF1, USF1, NECTIN4, CD84, CD48) 0.382157859168536 40 0.165341788581357 0.83366371397839 1874 0.475998225517826 2 1 1 -6.74338271145769 LTS-011 chr1 161072202 161087622 15421 * PFDN2 NA 0 NA 1.565 1 NA NA NA NA NA LTS-011 chr1 161087623 161198798 111176 * c(MIR5187, FCER1G, USP21, APOA2, NDUFS2, NIT1, UFC1, PFDN2, PPOX, TOMM40L, B4GALT3, DEDD, ADAMTS4) 0.437408438109036 11 0.141440639653017 1.18342667993198 659 0.503401076611997 4 2 2 -6.7700209236552 LTS-011 chr1 161198799 161336364 137566 * c(CFAP126, MPZ, SDHC, PCP4L1, TOMM40L, NR1I3) 0.470787392972495 4 0.0444259683818672 0.890564796762894 240 0.457008416571614 2 1 1 -7.90135210897667 LTS-011 chr1 161336365 161337583 1219 * CFAP126 NA 0 NA 0.562 1 NA NA NA NA NA LTS-011 chr1 161337584 161647730 310147 * c(FCGR2A, FCGR2B, FCGR3A, FCGR3B, CFAP126, HSPA6, HSPA7, FCGR2C) 0.43695388538435 12 0.0645879714854559 0.563537461857237 423 0.309678913373784 0 0 0 -7.12220587237087 LTS-011 chr1 161647731 173506219 11858489 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, LOC100506023, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, SLC9C2, C1orf111, LINC01142, NME7, CCDC190, FASLG, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, NA NA NA NA NA NA NA NA NA LTS-011 LMX1A, MGST3, LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, SUCO, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, TNFSF4, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, TNFSF18, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, C1orf105, NA NA NA NA NA NA NA NA NA NA NA NA LTS-011 PRDX6, NOS1AP) 0.413288660643039 166 0.120717661117717 0.816177233750979 7790 0.416254088764129 2 1 1 -6.73844664907894 LTS-011 NA NA NA NA LTS-011 chr1 173506220 173516767 10548 * SLC9C2 NA 0 NA 0.561 1 NA NA NA NA NA LTS-011 chr1 173516768 174671433 1154666 * c(GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, KLHL20, SLC9C2, ANKRD45, SERPINC1, DARS2, GAS5, SNORD74, SNORD75, SNORD76, SNORD77, SNORD78, LOC730159, ZBTB37, CENPL, GPR52, RABGAP1L) 0.333259320912077 6 0.17402873325977 0.721470154725102 905 0.355490896792784 1 1 0 -6.89644095103268 LTS-011 chr1 174671434 174721375 49942 * RABGAP1L NA 0 NA 1.129 1 NA NA NA NA NA LTS-011 chr1 174721376 174969444 248069 * c(CACYBP, RABGAP1L) 0.470364566838564 4 0.0276827262626594 1.13797774862949 211 0.517933681292409 4 2 2 -9.11135901921524 LTS-011 chr1 174969445 174973682 4238 * CACYBP NA 0 NA 0.636 1 NA NA NA NA NA LTS-011 chr1 174973683 181031051 6057369 * c(RASAL2-AS1, MIR3121, LHX4-AS1, MIR4424, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, CACYBP, MR1, C1orf220, ASTN1, RALGPS2, MIR488, QSOX1, KIAA1614, BRINP2, PAPPA2, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, TNR, LOC730102, NPHS2, TEX35, ACBD6, SEC16B, LHX4, ANGPTL1, XPR1, RASAL2, KIAA0040, CEP350, FAM20B) 0.395287864610309 103 0.138030937443766 0.803487955386731 4739 0.902079631759433 2 1 1 -6.73526496058732 LTS-011 chr1 181031052 181057655 26604 * c(MR1, IER5) NA 0 NA 1.101 1 NA NA NA NA NA LTS-011 chr1 181057656 181452872 395217 * c(GM140, IER5, CACNA1E) NA 0 NA 1.37803312749938 55 0.336497219083871 5 NA NA -5.76790891401201 LTS-011 chr1 181452873 181452925 53 * CACNA1E NA 0 NA 0.607 1 NA NA NA NA NA LTS-011 chr1 181452926 182549057 1096132 * c(ZNF648, TEDDM1, GLUL, RGSL1, LINC00272, RNASEL, CACNA1E) 0.391371472148236 12 0.136418779254666 0.673778251080642 885 0.331717359703306 1 1 0 -6.93269444533656 LTS-011 chr1 182549058 184763431 2214374 * c(ARPC5, TSEN15, FAM129A, DHX9, NMNAT2, COLGALT2, RGL1, LOC284648, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, RGS16, RNASEL, EDEM3, NPL, C1orf21, SHCBP1L, RGS8, SMG7) 0.36826179770747 26 0.16338054210481 0.926231828961349 2310 0.406735041297884 3 2 1 -6.81146736274803 LTS-011 chr1 184763432 186283550 1520119 * c(GS1-279B7.1, MIR548F1, RNU6-72P, PRG4, IVNS1ABP, FAM129A, SWT1, RNF2, TPR, TRMT1L, HMCN1) 0.451254130442953 19 0.0412392108874537 0.736462951584569 1245 0.289417775520919 2 1 1 -7.5819020107552 LTS-011 chr1 186283551 186283592 42 * c(MIR548F1, PRG4, TPR) NA 0 NA 1.571 1 NA NA NA NA NA LTS-011 chr1 186283593 196712731 10429139 * c(MIR1278, MIR548F1, MIR4735, PRG4, CFHR4, OCLM, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, CDC73, B3GALT2) 0.429027618666634 13 0.130595087668246 0.844871108172637 1620 0.390115289775084 2 1 1 -6.81685888850317 LTS-011 chr1 196712732 196801352 88621 * c(CFHR4, CFHR3, CFH, CFHR1) 0 1 NA 0.283899351035537 130 0.428181973656181 0 0 0 -5.79759024269534 LTS-011 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 0.403 1 NA NA NA NA NA LTS-011 chr1 196857130 197053282 196153 * c(CFHR4, F13B, ASPM, CFHR2, CFHR5) 0.289676129283951 3 0.262604899675031 0.585940553018978 233 0.320692026975193 1 1 0 -6.7460301222217 LTS-011 chr1 197053283 201115754 4062472 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, KIF21B, CAMSAP2, CRB1, ZNF281, NR5A2, TMEM9, ASPM, GPR25, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, C1orf106, LHX9, PTPRC, ASCL5, CACNA1S, DDX59, KIF14) 0.385583437436725 69 0.15410343096093 0.814846322706799 2841 0.452764205529715 2 1 1 -6.74016831552148 LTS-011 chr1 201115755 201122947 7193 * TMEM9 0.419 1 NA 1.32124630888239 13 0.410653856360305 4 4 0 -5.76454676834705 LTS-011 chr1 201122948 204124865 3001918 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, FMOD, PHLDA3, TMEM9, LMOD1, OPTC, LINC00303, UBE2T, RPS10P7, LAD1, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PKP1, LAX1, ETNK2, PRELP, IPO9, PTPN7, RABIF, KLHL12, LGR6, REN, RNPEP, MGAT4EP, SNRPE, SNORA77, TNNI1, TNNT2, LINC01136, BTG2, LINC00260, PPFIA4, NAV1, NA NA NA NA NA NA NA NA NA LTS-011 IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A) 0.443105832486273 96 0.0626357753275011 0.864402430853015 4859 0.380999406114837 2 1 1 -7.02248202858666 LTS-011 NA NA NA NA LTS-011 chr1 204124866 204167241 42376 * c(KISS1, REN) 0.054 1 NA 0.906145649919288 61 0.459487971741223 2 2 0 -5.76581579184254 LTS-011 chr1 204167242 204242965 75724 * c(GOLT1A, PLEKHA6) NA 0 NA 0.814898495703485 165 0.232258275903776 2 NA NA -5.76441322612696 LTS-011 chr1 204242966 204372562 129597 * c(LINC00628, PLEKHA6, PPP1R15B) NA 0 NA 1.546 1 NA NA NA NA NA LTS-011 chr1 204372563 204527240 154678 * c(MDM4, PIK3C2B, PPP1R15B) 0.383387326977311 7 0.167222122027075 1.28997245795614 562 0.579932644400656 5 3 2 -6.73904562293044 LTS-011 chr1 204527241 204527685 445 * MDM4 NA 0 NA 0.614 1 NA NA NA NA NA LTS-011 chr1 204527686 204988726 461041 * c(LRRN2, NFASC, MDM4) 0.217232072179734 6 0.249070003546526 0.722984738430396 396 0.443983737546753 2 2 0 -6.76021530336954 LTS-011 chr1 204988727 204988982 256 * NFASC 0.48 1 NA 0.762659304322954 6 0.735181610216142 2 2 0 -5.76441130634504 LTS-011 chr1 204988983 205055987 67005 * c(NFASC, TMEM81, RBBP5, CNTN2) 0.408516903402681 12 0.133962228959803 0.672475316287096 336 0.344249883209206 2 1 1 -6.74654416110673 LTS-011 chr1 205055988 207639937 2583950 * c(IL24, SLC26A9, CR2, MFSD4A, PM20D1, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, DSTYK, LEMD1-AS1, LOC284578, LOC284581, IL19, IL10, C1orf186, MIR135B, IL20, CDK18, PFKFB2, PIGR, KLHDC8A, AVPR1B, YOD1, RBBP5, NUCKS1, SRGAP2C, C4BPA, C4BPB, FAM72A, C1orf116, NUAK2, RASSF5, FCAMR, DYRK3, SLC45A3, RAB29, FCMR, MAPKAPK2, LEMD1, IKBKE, TMCC2) 0.42224766361717 62 0.104229703260524 0.91737290878996 3671 0.398006834614886 2 1 1 -6.89335422570081 LTS-011 chr1 207639938 207912286 272349 * c(CR1, CR1L, CR2) 0.471167327008192 4 0.0220208234783958 0.604127157674819 305 0.242087595162712 2 1 1 -10.21844360591 LTS-011 chr1 207912287 207925383 13097 * CD46 NA 0 NA 1.293 1 NA NA NA NA NA LTS-011 chr1 207925384 210006726 2081343 * c(MIR4260, C1orf74, LOC148696, DIEXF, HSD11B1, IRF6, LAMB3, MIR205, MIR29C, CD46, G0S2, PLXNA2, CAMK1G, MIR205HG, TRAF3IP3, CD34) 0.399675461718664 22 0.111982267071747 1.02926651025666 1065 0.401007870874237 3 2 1 -6.75045327920287 LTS-011 chr1 210006727 210008419 1693 * DIEXF NA 0 NA 0.874 1 NA NA NA NA NA LTS-011 chr1 210008420 214488258 4479839 * c(MIR3122, LINC00538, TATDN3, SPATA45, FAM71A, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, RD3, KCNH1, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, LINC00467, ANGEL2, LPGAT1) 0.397956624508007 43 0.135358136170995 0.821938697579961 2627 0.491514481109401 2 1 1 -6.73489362305971 LTS-011 chr1 214488259 214491387 3129 * SMYD2 NA 0 NA 1.722 1 NA NA NA NA NA LTS-011 chr1 214491388 214503489 12102 * SMYD2 0.462676910140529 2 0.00565685424949239 1.06372803024114 22 0.220356126556133 4 2 2 -16.2379283709034 LTS-011 chr1 214503490 214531370 27881 * c(SMYD2, PTPN14) 0 1 NA 1.1551353068605 45 0.433125145794136 4 4 0 -5.76474501945735 LTS-011 chr1 214531371 214815063 283693 * c(CENPF, PTPN14) 0.197853892954152 4 0.252291332920231 1.05935185897284 228 0.520207632332065 3 3 0 -6.73392740806496 LTS-011 chr1 214815064 215972467 1157404 * c(CENPF, KCNK2, KCTD3, USH2A) 0.254210012962293 10 0.230208214932096 0.776087755503773 620 0.433546688337327 2 2 0 -6.74197303149119 LTS-011 chr1 215972468 216496947 524480 * USH2A 0.454 1 NA 0.751063374560441 273 0.299780583949747 2 2 0 -5.78654740757804 LTS-011 chr1 216496948 217622697 1125750 * c(ESRRG, GPATCH2, USH2A) 0.338718581811412 5 0.196986547764054 0.745646357677298 280 0.364783112812588 2 1 1 -6.83308655351493 LTS-011 chr1 217622698 217664954 42257 * GPATCH2 NA 0 NA 1.461 1 NA NA NA NA NA LTS-011 chr1 217664955 219706548 2041594 * c(LINC00210, LYPLAL1, SPATA17, RRP15, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.443928018013039 3 0.0527162214123888 1.02205550908733 523 0.573806684640579 4 2 2 -7.20771992193089 LTS-011 chr1 219706549 220141986 435438 * c(EPRS, RNU5F-1, SLC30A10) 0.369 1 NA 0.506605319043636 101 0.239210028267551 1 1 0 -5.90731738392813 LTS-011 chr1 220141987 222923979 2781993 * c(BPNT1, DUSP10, BROX, EPRS, RAB3GAP2, RNU5F-1, HLX, MIA3, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, MARC2, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, C1orf115, HHIPL2, TAF1A) 0.437881880778645 14 0.12853280250069 0.867248320296381 1735 0.41038279841303 2 1 1 -6.81907097069913 LTS-011 chr1 222923980 223116102 192123 * c(FAM177B, DISP1) NA 0 NA 0.444 1 NA NA NA NA NA LTS-011 chr1 223116103 223853225 737123 * c(CCDC185, CAPN8, SUSD4, TLR5, DISP1) 0.388758677585593 7 0.178399364722337 0.657739849416514 511 0.383874941684136 1 1 0 -6.8255835567539 LTS-011 chr1 223853226 224622024 768799 * c(MIR320B2, MIR4742, FBXO28, CNIH4, CAPN8, NVL, TP53BP2, WDR26, CAPN2, DEGS1) 0.441880455034571 20 0.0382672045930771 0.870536295283684 899 0.368612040156122 2 1 1 -7.32888833659457 LTS-011 chr1 224622025 224803981 181957 * character(0) NA 0 NA 0.664 1 NA NA NA NA NA LTS-011 chr1 224803982 225589810 785829 * c(DNAH14, CNIH3, LBR) 0 1 NA 0.690713237228513 589 0.309297849280318 1 1 0 -5.84775459648942 LTS-011 chr1 225589811 228466453 2876643 * c(NA, MIR3620, MIR5008, LEFTY1, SNAP47, MRPL55, PARP1, SDE2, IBA57, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, LBR, ZNF847P, H3F3AP4, ENAH, PSEN2, COQ8A, GJC2, C1orf145, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, MIXL1, OBSCN, CDC42BPA, WNT3A, TMEM63A) 0.431883433814515 77 0.107607307074776 0.865222050624813 3116 0.389209322125969 2 1 1 -6.82113188497432 LTS-011 chr1 228466454 228560660 94207 * OBSCN 0.396244400176894 2 0.00424264068711929 0.595417138086064 556 0.183899915320138 5 3 2 -7.86522405059784 LTS-011 chr1 228560661 234614368 6053708 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR4666A, MIR4671, MIR4427, SPHAR, CAPN9, CCSAP, C1orf131, HIST3H2BB, SLC35F3, EXOC8, LOC149373, RNF187, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, KCNK1, COA6, TRIM67, TRIM17, EGLN1, MAP10, NUP133, DUSP5P1, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TARBP1, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, HIST3H2A, NA NA NA NA NA NA NA NA NA LTS-011 URB2) 0.398843517921168 84 0.137990308722043 0.805096279382646 4335 0.377434095532786 2 1 1 -6.73606227002639 LTS-011 NA NA NA NA LTS-011 chr1 234614369 234740000 125632 * c(LINC01354, TARBP1) NA 0 NA 3.121 1 NA NA NA NA NA LTS-011 chr1 234740001 234953934 213934 * c(LINC00184, LINC01132, IRF2BP2) 0.436095623118144 4 0.0163986788085708 2.21091602123787 115 0.737837396171003 8 4 4 -8.57446572119999 LTS-011 chr1 234953935 235272604 318670 * character(0) NA 0 NA 0.462 1 NA NA NA NA NA LTS-011 chr1 235272605 242511570 7238966 * c(LOC100130331, LGALS8-AS1, MIR1537, MIR3123, MIR4753, CHML, LYST, CHRM3, WDR64, EDARADD, B3GALNT2, PLD5, FH, RBM34, OPN3, GNG4, LINC01139, LGALS8, MAP1LC3C, MTR, NID1, ARID4B, HEATR1, ERO1B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, SNORA14B, TBCE, GPR137B, KMO, ACTN2, EXO1, GGPS1, TOMM20) 0.405146830197414 68 0.141833206522112 0.752110245772706 4272 0.356223566715033 2 1 1 -6.93592028501269 LTS-011 chr1 242511571 243329402 817832 * c(PLD5, LINC01347, CEP170) NA 0 NA 0.544637233938067 156 0.290031037670525 1 NA NA -5.83004619392303 LTS-011 chr1 243329403 244993297 1663895 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, ADSS, C1orf100, C1orf101, LOC339529, DESI2, CEP170) 0.402761166364134 6 0.189350908808663 0.875369415078315 787 0.442564878850264 2 1 1 -6.76044142129559 LTS-011 chr1 244993298 244998628 5331 * character(0) NA 0 NA 1.351 1 NA NA NA NA NA LTS-011 chr1 244998629 245133770 135142 * c(COX20, NA, HNRNPU, EFCAB2) 0.456969357301858 2 0.0615182899632297 1.20851974731723 243 0.475343905597747 4 2 2 -7.17225386346085 LTS-011 chr1 245133771 245165432 31662 * EFCAB2 NA 0 NA 0.822 1 NA NA NA NA NA LTS-011 chr1 245165433 247726830 2561398 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, LINC01341, CNST, LOC255654, AHCTF1, C1orf229, OR2W5, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2C3, EFCAB2, ZNF496, ZNF670) 0.400137070129237 45 0.133823153316742 0.80599300253042 1722 0.489119329566149 2 1 1 -6.73372315056306 LTS-011 chr1 247726831 248569369 842539 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, GCSAML, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3, OR2G2) 0.433559356293644 59 0.053312401527539 0.529767789779594 762 0.343015133043107 0 0 0 -7.25788325594237 LTS-011 chr1 248569370 248604614 35245 * OR2T1 0.329 1 NA 0.59833445357289 27 0.257280722889163 1 1 0 -5.7644610679153 LTS-011 chr1 248604615 248605303 689 * character(0) 0.241 1 NA 0.503882154434136 17 0.157223964458348 1 1 0 -5.764978129079 LTS-011 chr1 248605304 248814033 208730 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.32566030513305 11 0.136210932680964 0.409963975459107 232 0.329633661393961 1 1 0 -6.90402520945615 LTS-011 chr1 248814034 248814052 19 * OR2T27 0.483 1 NA 2.382 1 NA NA NA NA NA LTS-011 chr1 248814053 249143673 329621 * c(MIR3124, OR14I1, OR2T27, LYPD8, ZNF672, SH3BP5L) 0.141187945909263 5 0.194628620711343 0.828610720672452 181 0.565184521551024 3 3 0 -6.80713149299629 LTS-011 chr1 249143674 249214134 70461 * c(PGBD2, ZNF692, ZNF672) NA 0 NA 0.787689338588187 157 0.354949264315966 2 NA NA -5.76475466524424 LTS-011 chr2 38824 224970 186147 * c(SH3YL1, FAM110C) 0.256 1 NA 0.666981435117498 103 0.240924430853468 1 1 0 -5.78208577661855 LTS-011 chr2 224971 3660983 3436013 * c(RNASEH1-AS1, TMEM18, MYT1L, RNASEH1, SH3YL1, FAM150B, LINC01115, TRAPPC12, ACP1, SNTG2, ADI1, RPS7, TPO, TSSC1, MYT1L-AS1, PXDN, COLEC11) 0.241521997477443 61 0.0876481041662307 0.856457458233624 1397 0.419969018573421 2 2 0 -6.76537570185322 LTS-011 chr2 3660984 3673507 12524 * COLEC11 NA 0 NA 0.63 1 NA NA NA NA NA LTS-011 chr2 3673508 6991504 3317997 * c(LINC01304, CMPK2, LINC01105, LOC400940, LINC00487, ALLC, SOX11, LINC01249, COLEC11) 0.289582225882659 11 0.0663940030150588 0.620496387436895 430 0.238151779027949 1 1 0 -6.93181993092745 LTS-011 chr2 6991505 6991577 73 * CMPK2 NA 0 NA 1.084 1 NA NA NA NA NA LTS-011 chr2 6991578 20884398 13892821 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, FAM84A, GDF7, DDX1, E2F6, CYS1, LPIN1, PUM2, NTSR2, ATP6V1C2, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, RHOB, LINC00954, MATN3, MYCN, ODC1, NBAS, CPSF3, KIDINS220, NA NA NA NA NA NA NA NA NA LTS-011 WDR35, RDH14, RRM2, SDC1, HS1BP3, ADAM17, RAD51AP2, VSNL1, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, RNF144A) 0.255008855593556 141 0.0896484629529573 0.871476541275348 6038 0.448596875471712 2 2 0 -6.93081268948534 LTS-011 NA NA NA NA LTS-011 chr2 20884399 21366191 481793 * c(APOB, LDAH) 0.221008173446762 9 0.123401220055197 0.577622428984674 594 0.261450163264127 1 1 0 -7.1512365386809 LTS-011 chr2 23729986 27291620 3561635 * c(MIR1301, CENPA, RAB10, ADCY3, KLHL29, CIB4, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, MAPRE3, EFR3B, HADHA, HADHB, C2orf70, PFN4, FAM228B, KCNK3, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, TMEM214, SLC35F6, ASXL2, DPYSL5, AGBL5, FAM228A, DNAJC27-AS1, CENPO, WDCP, SELENOI, NCOA1, DRC1, OTOF, TP53I3) 0.255662838466025 99 0.0906064908166496 0.803618356505964 4466 0.380293879685334 2 2 0 -6.74251653235854 LTS-011 chr2 27291621 27291889 269 * AGBL5 NA 0 NA 1.23 1 NA NA NA NA NA LTS-011 chr2 27291890 27321939 30050 * c(OST4, EMILIN1, KHK, AGBL5) NA 0 NA 1.24954301934114 162 0.418300231666911 4 NA NA -5.76444088717586 LTS-011 chr2 27321940 27885159 563220 * c(GTF3C2-AS1, PREB, CGREF1, GPN1, ZNF513, TCF23, KRTCAP3, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, PRR30, KHK, MPV17, ATRAID, PPM1G, TRIM54, FNDC4, UCN, SLC30A3, CAD, CCDC121, C2orf16, ZNF512, ABHD1, SLC5A6, EIF2B4, SNX17, SUPT7L) 0.0535043311499316 5 0.0979397774144908 0.794105891780649 2420 0.351129638813416 4 4 0 -7.88385369220757 LTS-011 chr2 27885160 27886285 1126 * SUPT7L NA 0 NA 1.667 1 NA NA NA NA NA LTS-011 chr2 27886286 29025038 1138753 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, SLC4A1AP, FOSL2, SPDYA, PPP1CB, RBKS, MRPL33, BRE, SUPT7L) 0.275345783168469 12 0.0440745752312848 1.0549965750525 1008 0.49157378020343 5 4 1 -7.00927951482264 LTS-011 chr2 29025039 31567699 2542661 * c(FAM179A, WDR43, ALK, SPDYA, LCLAT1, SNORD53, EHD3, C2orf71, CAPN14, YPEL5, PPP1CB, TRMT61B, SNORD92, XDH, GALNT14, CLIP4, LBH, CAPN13) 0.257755499078942 40 0.0955354377798881 0.739104047132832 1662 0.339037915768865 2 2 0 -6.86186118089593 LTS-011 chr2 31567700 38795431 7227732 * c(LOC100271832, LOC100288911, CEBPZOS, MIR4765, RMDN2-AS1, CEBPZ, CDC42EP3, MYADML, RMDN2, CYP1B1, PRKD3, GPATCH11, RASGRP3, QPCT, FAM98A, LINC00486, CYP1B1-AS1, SULT6B1, LTBP1, MEMO1, CRIM1, VIT, HEATR5B, NDUFAF7, TTC27, SLC30A6, EIF2AK2, BIRC6, NLRC4, ATL2, SPAST, SRD5A2, STRN, MIR558, XDH, YIPF4, DPY30, HNRNPLL, FEZ2) 0.265451110480537 48 0.0801002004362603 0.830212733316816 3954 0.3767287033682 2 2 0 -6.78241296023492 LTS-011 chr2 38795432 39006664 211233 * c(GALM, SRSF7, GEMIN6, HNRNPLL) 0.232678814641477 3 0.12761008319617 1.14621983496174 264 0.452282154024139 3 3 0 -6.79037945757073 LTS-011 chr2 39006665 39008642 1978 * GEMIN6 NA 0 NA 0.4 1 NA NA NA NA NA LTS-011 chr2 39008643 39431730 423088 * c(ARHGEF33, CDKL4, LOC375196, SOS1, MORN2, GEMIN6, DHX57) 0.198210925238755 8 0.0908592907428058 0.701018609181494 615 0.382100990456262 2 2 0 -6.93029843485397 LTS-011 chr2 39431731 39431733 3 * CDKL4 NA 0 NA 1.036 1 NA NA NA NA NA LTS-011 chr2 39431734 43019761 3588028 * c(SLC8A1-AS1, TMEM178A, OXER1, KCNG3, HAAO, EML4, CDKL4, LOC388942, C2orf91, MTA3, SLC8A1, LOC728730, THUMPD2, MAP4K3, PKDCC, COX7A2L) 0.257552647078789 32 0.079044291381478 0.852523548892029 1289 0.404290775367764 2 2 0 -6.77567536112366 LTS-011 chr2 43019762 43451594 431833 * ZFP36L2 NA 0 NA 1.85570146629047 52 0.876239402330253 7 NA NA -5.76441295373079 LTS-011 chr2 43451595 43819242 367648 * c(LINC01126, THADA, ZFP36L2) 0.300260371834171 23 0.0953651397598878 0.965556721098239 364 0.384342012501219 4 3 1 -6.87022141034647 LTS-011 chr2 43819243 43819381 139 * THADA NA 0 NA 0.591 1 NA NA NA NA NA LTS-011 chr2 43819382 45171960 1352579 * c(MIR548AD, LRPPRC, PLEKHH2, DYNC2LI1, PPM1B, THADA, ABCG5, ABCG8, SIX3, SLC3A1, C1GALT1C1L, CAMKMT, PREPL) 0.255259967078762 24 0.0915945599137695 0.739333656058481 1267 0.50771105339537 2 2 0 -6.76817486131071 LTS-011 chr2 45171961 45172075 115 * SIX3 NA 0 NA 1.623 1 NA NA NA NA NA LTS-011 chr2 45172076 48872301 3700226 * c(LINC01119, SIX2, GTF2A1L, STON1, PPP1R21, EPAS1, RHOQ, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LINC01121, EPCAM, MSH2, PIGF, SRBD1, PRKCE, KCNK12, TTC7A, SIX3, MIR559, FBXO11, CALM2, MCFD2, ATP6V1E2, CRIPT, SOCS5) 0.243163905733735 36 0.104354645624869 0.915715696979901 2122 0.787583287322248 2 2 0 -6.78325636653421 LTS-011 chr2 48872302 48873622 1321 * c(GTF2A1L, STON1-GTF2A1L) NA 0 NA 0.628 1 NA NA NA NA NA LTS-011 chr2 48873623 54753677 5880055 * c(MIR3682, GPR75, GTF2A1L, C2orf73, PSME4, FSHR, ERLEC1, STON1-GTF2A1L, TSPYL6, LHCGR, CHAC2, ASB3, SPTBN1, NRXN1, ACYP2) 0.261161942490363 31 0.126247895755912 0.72828845508348 1373 0.394962493782681 2 2 0 -7.00604423147171 LTS-011 chr2 54753678 54756442 2765 * c(RPL23AP32, SPTBN1) NA 0 NA 1.218 1 NA NA NA NA NA LTS-011 chr2 54756443 54952420 195978 * c(EML6, RPL23AP32, SPTBN1) 0.26 1 NA 1.11515669467186 308 0.416040829251323 3 3 0 -5.76972218141569 LTS-011 chr2 54952421 55040332 87912 * EML6 NA 0 NA 0.768 1 NA NA NA NA NA LTS-011 chr2 55040333 62228137 7187805 * c(SNORA70B, MIR216B, MIR4432, CCT4, CFAP36, CCDC85A, CLHC1, AHSA2, COMMD1, PUS10, EFEMP1, LOC339803, C2orf74, PRORSD1P, EML6, LINC01122, LINC01185, MIR216A, MIR217, MTIF2, PEX13, BCL11A, FANCL, CCDC88A, RTN4, PPP4R3B, REL, RPS27A, PAPOLG, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, USP34) 0.262065407836603 58 0.0808464090932856 0.88226404909002 3164 0.471717336390149 2 2 0 -6.88330937341321 LTS-011 chr2 62228138 62282535 54398 * COMMD1 NA 0 NA 1.626 1 NA NA NA NA NA LTS-011 chr2 62282536 63101676 819141 * c(MIR5192, B3GNT2, COMMD1, TMEM17, EHBP1) 0.0759601878107062 4 0.0581721582889959 2.35576488284853 209 1.71477399055991 11 11 0 -6.7359420750801 LTS-011 chr2 63101677 63169802 68126 * EHBP1 NA 0 NA 0.805 1 NA NA NA NA NA LTS-011 chr2 63169803 68694968 5525166 * c(LOC100132215, DBIL5P2, MIR4434, MIR4778, ACTR2, C1D, WDR92, LINC00309, APLF, SPRED2, CEP68, EHBP1, CNRIP1, LGALSL, LOC339807, LOC400958, MDH1, MEIS1, OTX1, WDPCP, VPS54, PLEK, ETAA1, AFTPH, PPP3R1, FBXO48, PNO1, PELI1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, UGP2, SERTAD2) 0.285703868854568 54 0.0745884492231353 0.879584362501875 2285 0.465944373766892 2 2 0 -6.99361936881503 LTS-011 chr2 68694969 68717279 22311 * APLF NA 0 NA 1.401 1 NA NA NA NA NA LTS-011 chr2 68717280 69208220 490941 * c(PROKR1, GKN2, APLF, BMP10, GKN1, ARHGAP25) 0.102955518479396 5 0.0685003649625314 1.61014551197342 380 0.622406141384114 7 7 0 -6.75158083752121 LTS-011 chr2 69208221 69240280 32060 * ANTXR1 NA 0 NA 2.784 1 NA NA NA NA NA LTS-011 chr2 69240281 70169244 928964 * c(SNORA36C, MIR3126, SNRNP27, AAK1, GFPT1, NFU1, ANXA4, MXD1, GMCL1, ANTXR1) 0.0977967788331738 12 0.0594288471938324 2.19400652739459 1008 0.968901658066113 8 8 0 -6.73547610508921 LTS-011 chr2 70169245 71839902 1670658 * c(LOC100133985, MPHOSPH10, TEX261, ADD2, ASPRV1, CLEC4F, VAX2, ZNF638, FIGLA, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, SNRPG, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, MCEE, FAM136A) 0.18067575941083 33 0.080249197579298 1.15437878253204 2122 0.572040322538635 4 4 0 -6.77345141989306 LTS-011 chr2 71839903 71840441 539 * DYSF NA 0 NA 0.616 1 NA NA NA NA NA LTS-011 chr2 71840442 74130073 2289632 * c(SMYD5, CCT7, STAMBP, FBXO41, EGR4, ALMS1P1, EMX1, EXOC6B, RAB11FIP5, NOTO, C2orf78, TPRKB, CYP26B1, SPR, ACTG2, ALMS1, DYSF, PRADC1, DUSP11, NAT8, SFXN5) 0.258690571497775 44 0.0875686984921127 0.761139083349705 2117 0.398348173406552 2 2 0 -6.7842044141318 LTS-011 chr2 74130074 76976093 2846020 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SEMA4F, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, TET3, WBP1, HTRA2, HK2, TLX2, BOLA3, C2orf81, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, GCFC2, ACTG2, MOGS, LRRTM4, INO80B, WDR54, EVA1A, LOXL3, PCGF1, CCDC142, LBX2, MRPL19) 0.261094182028507 21 0.0635701337481832 0.877505215847118 2652 0.406678518050662 2 2 0 -6.82729119093452 LTS-011 chr2 77743754 80875881 3132128 * c(SNAR-H, MIR4264, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, LRRTM4) 0.0832077770017165 6 0.0238075618239248 1.98720591662322 431 0.912088186715741 9 9 0 -6.80351811901177 LTS-011 chr2 84517922 85097948 580027 * c(TRABD2A, DNAH6, FUNDC2P2, SUCLG1) 0.305617211186208 5 0.0585294797516602 0.723227163726239 524 0.35913682678848 1 1 0 -6.89106622578622 LTS-011 chr2 85097949 85107951 10003 * TRABD2A NA 0 NA 1.018 1 NA NA NA NA NA LTS-011 chr2 85107952 85843657 735706 * c(PARTICL, TGOLN2, USP39, VAMP5, TRABD2A, TMEM150A, GGCX, SH2D6, C2orf68, MAT2A, RNF181, RETSAT, KCMF1, CAPG, TCF7L1, ELMOD3, VAMP8, TMSB10) 0.287723378180302 34 0.0849191919545302 0.996979984681723 1040 0.443480353877571 4 3 1 -6.96404735453922 LTS-011 chr2 85843658 85846258 2601 * USP39 NA 0 NA 0.764 1 NA NA NA NA NA LTS-011 chr2 85846259 87131129 1284871 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, GNLY, USP39, IMMT, POLR1A, LOC284950, MRPL35, CHMP3, PTCD3, KDM3A, SFTPB, RMND5A, REEP1, SNORD94, RNF103, ATOH8, ST3GAL5, LOC90784, CD8A, CD8B) 0.2419577632344 39 0.0762918697680988 0.823065015241557 1696 0.449254139970971 2 2 0 -6.73495723189105 LTS-011 chr2 87131130 87156942 25813 * RMND5A NA 0 NA 0.15 1 NA NA NA NA NA LTS-011 chr2 87156943 87426649 269707 * c(LOC285074, RMND5A) 0.252663282648207 2 0.014142135623731 0.403878599752727 148 0.455928123861204 2 2 0 -7.23709974480113 LTS-011 chr2 87426650 91937699 4511050 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.220631277325914 30 0.100331754293146 0.85219980664668 976 0.682545049596638 2 2 0 -6.78267070510931 LTS-011 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.02730803647827 17 0.468545739810019 3 NA NA -5.76441213253426 LTS-011 chr2 95537183 95537544 362 * c(TEKT4, LOC442028) 0.207 1 NA 1.01516782622072 7 0.442671059215154 3 3 0 -5.76441016777319 LTS-011 chr2 95537545 96049799 512255 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.206939003479766 15 0.127887152636705 1.01295142690071 512 0.50330372905325 3 3 0 -6.73744803945969 LTS-011 chr2 96049800 96327203 277404 * c(TRIM43, KCNIP3, FAHD2A, TRIM43B) 0.149168547670017 3 0.14738498340514 0.748435980463402 231 0.414846297189377 3 3 0 -6.88483477386465 LTS-011 chr2 96327204 96328039 836 * character(0) 0.283 1 NA 0.63260177175631 15 0.226255376152911 1 1 0 -5.76442828466402 LTS-011 chr2 96328040 96619774 291735 * character(0) 0.37309049553848 27 0.0777828997092516 0.958678876681452 120 0.776011946136281 3 2 1 -6.74015791943169 LTS-011 chr2 96619775 96789885 170111 * c(GPAT2, ADRA2B, ASTL, FAHD2CP) NA 0 NA 0.798040996162666 193 0.357804888816109 2 NA NA -5.76469755246896 LTS-011 chr2 96789886 96789890 5 * ASTL NA 0 NA 1.217 1 NA NA NA NA NA LTS-011 chr2 96789891 96810527 20637 * c(DUSP2, ASTL) 0.274 1 NA 1.12906102235626 77 0.272595698610394 4 4 0 -5.76558884727534 LTS-011 chr2 96810528 97483244 672717 * c(MIR3127, ARID5A, ITPRIPL1, DUSP2, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, TMEM127, KANSL3, STARD7, LMAN2L, FER1L5, NEURL3, CIAO1) 0.176348057705978 4 0.138643427539859 1.01072203651593 1419 0.391797586076697 3 3 0 -6.74537675031901 LTS-011 chr2 97483245 97490889 7645 * CNNM3 NA 0 NA 6.267 1 NA NA NA NA NA LTS-011 chr2 97490890 97633376 142487 * c(ANKRD23, CNNM3, ANKRD39, FAM178B, SEMA4C) 0.204352823386587 3 0.0121243556529821 4.2443522620335 376 1.63245473927244 18 15 3 -6.82217328993253 LTS-011 chr2 97633377 97636413 3037 * FAM178B NA 0 NA 1.437 1 NA NA NA NA NA LTS-011 chr2 97636414 98171645 535232 * c(FAHD2B, ANKRD36, FAM178B, ANKRD36B) 0.365277094629429 6 0.132539805341641 2.55775670223242 231 1.62593318885285 11 7 4 -6.73461694255163 LTS-011 chr2 98171646 98192815 21170 * ANKRD36B NA 0 NA 4.711 1 NA NA NA NA NA LTS-011 chr2 98192816 99695278 1502463 * c(ACTR1B, MGAT4A, CNGA3, COX5B, VWA3B, TMEM131, UNC50, KIAA1211L, INPP4A, COA5, ANKRD36B, LINC01125, ZAP70, TSGA10) 0.104903297828182 5 0.107215670496434 3.74050893272788 1477 1.73206181285571 17 16 1 -6.73373470391818 LTS-011 chr2 99695279 107120812 7425534 * c(LOC100287010, LINC01158, MIR4772, MIR5696, TXNDC9, TBC1D8, GPR45, NMS, LYG1, MITD1, TMEM182, LINC01102, C2orf15, LONRF2, CREG2, FHL2, LYG2, RNF149, LINC01114, LOC285000, PLGLA, IL1R1, SLC9A4, AFF3, NPAS2, MRPL30, REV1, LIPT1, POU3F3, CNOT11, RPL31, MRPS9, RGPD3, SLC9A2, SNORD89, RFX8, IL1R2, PDCL3, C2orf49, UXS1, TSGA10, NCK2, C2orf40, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, NA NA NA NA NA NA NA NA NA LTS-011 EIF5B) 0.195587062124368 82 0.0741340168484084 1.01721191442699 4075 0.516278777561521 3 3 0 -6.73325345779968 LTS-011 NA NA NA NA LTS-011 chr2 107120813 107120855 43 * character(0) NA 0 NA 0.751 1 NA NA NA NA NA LTS-011 chr2 107120856 109006680 1885825 * c(SULT1C2P1, SULT1C4, RGPD4, SULT1C3, SLC5A7, SULT1C2, RGPD4-AS1, ST6GAL2) 0.181101723376804 14 0.0726532106034483 0.759901826343006 472 0.305117066903829 2 2 0 -7.22809218981479 LTS-011 chr2 109006681 109065003 58323 * character(0) NA 0 NA 1.062 1 NA NA NA NA NA LTS-011 chr2 109065004 112523974 3458971 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, CCDC138, LINC00116, SH3RF3, LIMS1, NPHP1, MIR4435-2HG, ACOXL, RANBP2, SOWAHC, BUB1, MALL, GCC2) 0.196786266211315 22 0.0605958330114784 1.0037790096763 1534 0.497088716261395 3 3 0 -6.7354756837892 LTS-011 chr2 112523975 112579053 55079 * ANAPC1 0.263 1 NA 0.490196516405751 130 0.314404923045207 0 0 0 -5.7787021156586 LTS-011 chr2 112579054 112582505 3452 * ANAPC1 NA 0 NA 1.084 1 NA NA NA NA NA LTS-011 chr2 112582506 113539388 956883 * c(MERTK, FBLN7, TTL, CKAP2L, IL1A, ZC3H6, FLJ42351, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.164976535995592 24 0.125267597624017 0.978505223796559 1418 0.48227769725374 3 3 0 -6.77412688584118 LTS-011 chr2 113539389 113763463 224075 * c(IL37, IL36A, IL1A, IL1B, IL36G) 0.322 1 NA 0.96499172006382 139 0.401733216849929 3 3 0 -5.76703670636369 LTS-011 chr2 113763464 113789413 25950 * c(IL36B, IL36A) 0.343766970167065 5 0.0107144761887831 1.2245811449931 84 1.08686623212815 18 12 6 -6.75571850481089 LTS-011 chr2 113789414 113816908 27495 * c(IL36RN, IL36B) NA 0 NA 2.405 1 NA NA NA NA NA LTS-011 chr2 113816909 114392751 575843 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL36RN, IL1RN, WASH2P, FAM138B, PAX8-AS1, PAX8, IL1F10, DDX11L2) 0.377034864869848 33 0.085547047573162 2.08894665820868 518 1.17226544334533 8 5 3 -6.73460528674113 LTS-011 chr2 114392752 114395289 2538 * RABL2A NA 0 NA 0.814 1 NA NA NA NA NA LTS-011 chr2 114395290 114425155 29866 * RABL2A 0.421003533949944 3 0.0570116947067295 0.777404208156968 60 0.319949220900446 2 1 1 -6.79691117226066 LTS-011 chr2 114425156 114425311 156 * character(0) NA 0 NA 2.388 1 NA NA NA NA NA LTS-011 chr2 114425312 114719451 294140 * c(MIR4782, ACTR3, SLC35F5) 0.415562202732853 18 0.109833162248074 2.12344413159889 300 1.00599876271835 8 4 4 -6.74186605365041 LTS-011 chr2 114719452 115200148 480697 * c(LOC100499194, LINC01191, DPP10) NA 0 NA 1.91344489511315 22 0.345489188283482 7 NA NA -5.7671259159329 LTS-011 chr2 115200149 116539888 1339740 * c(DPP10-AS1, DPP10) 0 1 NA 1.0072679842076 115 0.460447990157379 3 3 0 -5.7650793552743 LTS-011 chr2 116539889 130737359 14197471 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, TMEM177, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, MARCO, DDX18, HS6ST1) 0.180299815915067 103 0.0957234817637484 0.984902785435455 5216 0.511234155209217 3 3 0 -6.79057544103762 LTS-011 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.271 1 NA NA NA NA NA LTS-011 chr2 130737484 130909867 172384 * c(RAB6C-AS1, MED15P9, FAR2P1, SMPD4, POTEF, RAB6C, CCDC74B) 0.187601945525619 5 0.117911831467415 0.663230002554631 173 0.873795737222661 3 3 0 -6.76118552567465 LTS-011 chr2 130909868 131297323 387456 * c(FAR2P2, TUBA3E, PTPN18, SMPD4, POTEI, CFC1B, MZT2B, CCDC115, IMP4) 0.208730433233871 19 0.0769666898406658 1.06922032273949 470 0.486032056790225 3 3 0 -6.7513912045079 LTS-011 chr2 131297324 131331824 34501 * character(0) NA 0 NA 0.091 1 NA NA NA NA NA LTS-011 chr2 131331825 131522056 190232 * c(CYP4F30P, AMER3, GPR148, CFC1, POTEJ) NA 0 NA 0.542634955012957 128 0.217634735029223 1 NA NA -5.79360628759029 LTS-011 chr2 131522057 131955495 433439 * c(FAM168B, AMER3, ARHGEF4, PLEKHB2) 0.135567412121828 6 0.0714219854106563 0.781224105848339 407 0.370797942643658 4 4 0 -7.18489628331074 LTS-011 chr2 131955496 132111036 155541 * c(LOC440910, POTEE, PLEKHB2) NA 0 NA 0.398 1 NA NA NA NA NA LTS-011 chr2 132111037 132227954 116918 * c(WTH3DI, LINC01120, NOC2LP2, PLEKHB2) 0.221471468050065 5 0.0857508017455231 0.503265708169325 138 0.438365835258699 2 2 0 -6.86322894376393 LTS-011 chr2 132227955 132229599 1645 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-011 chr2 132229600 135213515 2983916 * c(MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, LOC150776, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, MZT2A, TMEM163, CCDC74A) 0.249795060312399 29 0.0838398220629481 0.901064265690088 866 0.401435647019736 2 2 0 -6.84886497615759 LTS-011 chr2 135213516 135213519 4 * TMEM163 NA 0 NA 0.625 1 NA NA NA NA NA LTS-011 chr2 135213520 141260668 6047149 * c(CCNT2-AS1, LOC100507600, NXPH2, ACMSD, DARS, RAB3GAP1, UBXN4, R3HDM1, HNMT, SPOPL, LCT, MIR128-1, MCM6, LRP1B, YY1P2, CXCR4, MAP3K19, THSD7B, TMEM163, ZRANB3, CCNT2) 0.239138818352061 28 0.128392400342109 0.754785769408262 2216 0.384281112634007 2 2 0 -6.86867174429485 LTS-011 chr2 141260669 141298674 38006 * LRP1B 0.295 1 NA 0.874382981154781 43 0.701581759000738 2 2 0 -5.76465276455015 LTS-011 chr2 141298675 144704770 3406096 * c(LRP1B, ARHGAP15, GTDC1, KYNU) 0.305082568626665 7 0.0567974680857552 0.742811707247735 502 0.301083061041379 2 2 0 -7.50747767524034 LTS-011 chr2 144704771 144709529 4759 * GTDC1 NA 0 NA 1.29 1 NA NA NA NA NA LTS-011 chr2 144709530 153505273 8795744 * c(ZEB2-AS1, MIR4773-1, MIR4773-2, STAM2, FMNL2, LYPD6, LYPD6B, EPC2, ARL5A, MMADHC, RBM43, KIF5C, RND3, TEX41, NEB, ORC4, RIF1, MBD5, TNFAIP6, PABPC1P2, CACNB4, GTDC1, NMI, ACVR2A, ZEB2) 0.371851269028725 40 0.118320184354323 1.0234259931739 3238 0.476130340148323 3 2 1 -6.73666882906529 LTS-011 chr2 153505274 153589091 83818 * c(FMNL2, ARL6IP6, PRPF40A) 0 2 0 1.41518087295495 307 0.685557384858669 0 0 0 -Inf LTS-011 chr2 153589092 153591532 2441 * ARL6IP6 NA 0 NA 0.9 1 NA NA NA NA NA LTS-011 chr2 153591533 162282412 8690880 * c(TANK, LOC100144595, LY75-CD302, MIR4785, PSMD14, TBR1, GALNT5, GALNT13, ACVR1C, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, GPD2, BAZ2B, ITGB6, KCNJ3, LY75, NR4A2, CCDC148-AS1, RPRM, ERMN, RBMS1, MARCH7, PKP4, TANC1, ACVR1, DAPL1, CYTIP, CD302) 0.364578246500429 60 0.120754421144688 1.00387437420325 3081 0.462743986291255 3 2 1 -6.75067397230783 LTS-011 chr2 162282413 162356011 73599 * AHCTF1P1 NA 0 NA 0.256 1 NA NA NA NA NA LTS-011 chr2 162356012 162849938 493927 * c(DPP4, AHCTF1P1, SLC4A10) 0.468161254400415 2 0.00707106781186548 0.677542508655382 249 0.303124860970288 2 1 1 -15.563115033821 LTS-011 chr2 162849939 162851454 1516 * DPP4 NA 0 NA 1.023 1 NA NA NA NA NA LTS-011 chr2 162851455 166845995 3994541 * c(SNORA70F, LOC100506124, TTC21B-AS1, SLC38A11, DPP4, FAP, COBLL1, GCA, GALNT3, GCG, GRB14, FIGN, SCN1A, SCN2A, SCN3A, IFIH1, TTC21B, CSRNP3, KCNH7) 0.343968436314299 26 0.191359958837145 1.01012426176085 2276 0.525619920751661 3 2 1 -6.75619849746378 LTS-011 chr2 166845996 168726996 1881001 * c(XIRP2, SCN1A, SCN7A, SCN9A, B3GALT1) 0.348736553504435 17 0.14773296657065 0.779227553503705 975 0.32604448599022 2 1 1 -6.8304660416397 LTS-011 chr2 168726997 171717509 2990513 * c(NA, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, BBS5, CCDC173, UBR3, MYO3B, KLHL23, CERS6, GAD1, STK39, METTL5, SP5, LRP2, LINC01124, PHOSPHO2, SPC25, G6PC2, SSB, FASTKD1, ABCB11, B3GALT1, PPIG) 0.375118055813897 67 0.128428845436364 0.921089792834303 2684 0.434598683216432 3 2 1 -6.83284007117758 LTS-011 chr2 171717510 179397441 7679932 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, HOXD-AS2, TTN-AS1, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, HAGLR, MIR10B, NFE2L2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, SP3, TTN, WIPF1, NA NA NA NA NA NA NA NA NA LTS-011 SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, TTC30A, CIR1, TLK1) 0.358499664974899 80 0.14537866531618 1.03989030644961 5298 0.518942193137517 3 2 1 -6.7530995000554 LTS-011 NA NA NA NA LTS-011 chr2 179397442 179397540 99 * c(MIR548N, TTN-AS1, TTN) NA 0 NA 0.853 1 NA NA NA NA NA LTS-011 chr2 179397541 179641611 244071 * c(MIR548N, TTN-AS1, TTN) 0.361443755644258 10 0.1877727941482 0.758856449119368 2787 0.247661556439814 2 1 1 -6.77283227364391 LTS-011 chr2 179641612 191374061 11732450 * c(NEMP2, MIR1258, MIR1245A, MIR3129, MIR3606, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, FRZB, HIBCH, MSTN, CCDC141, SLC40A1, INPP1, ITGA4, ITGAV, CERKL, FSIP2, NEUROD1, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, MFSD6, ZC3H15, CWC22, OSGEPL1, SSFA2, MIR561, TFPI, TTN, WDR75, C2orf88, SESTD1, ZNF804A, ORMDL1) 0.383781422789107 96 0.104602654607219 1.00941546225073 5634 0.500208591050137 3 2 1 -6.73699664112433 LTS-011 chr2 191374062 191375128 1067 * NEMP2 NA 0 NA 1.196 1 NA NA NA NA NA LTS-011 chr2 191375129 192700519 1325391 * c(NEMP2, GLS, MYO1B, NAB1, NABP1, STAT1, STAT4, SDPR) 0.429290569854478 6 0.0499469718801851 1.19353863440478 946 0.573303480844253 4 2 2 -6.9046232803878 LTS-011 chr2 192700520 196865572 4165053 * c(TMEFF2, DNAH7, SLC39A10, PCGEM1, SDPR) 0.410353188553169 5 0.0555202665699652 0.790886554042475 652 0.351194408155105 2 1 1 -6.76129340129824 LTS-011 chr2 196865573 196866385 813 * DNAH7 NA 0 NA 1.16 1 NA NA NA NA NA LTS-011 chr2 196866386 206484664 9618279 * c(SNORD11B, LOC100130452, LOC100507140, HSPE1-MOB4, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, MOB4, SPATS2L, CCDC150, FAM126B, ICOS, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, C2orf66, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, DNAH7, CYP20A1, HECW2, ALS2, MPP4, NIF3L1, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, NA NA NA NA NA NA NA NA NA LTS-011 BMPR2, TRAK2, BOLL, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, CASP10, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, CD28, BZW1) 0.385830413905817 97 0.0897063304914461 0.971525472820731 7347 0.47598398141561 3 2 1 -6.79643377420798 LTS-011 NA NA NA NA LTS-011 chr2 206484665 207027446 542782 * c(GCSHP3, PARD3B, EEF1B2, SNORD51, NDUFS1, INO80D, SNORA41, NRP2) 0.441995136908382 5 0.0605747472136698 1.15619460828438 698 0.523658711806473 4 2 2 -6.98389378746267 LTS-011 chr2 207027447 207027606 160 * EEF1B2 NA 0 NA 0.46 1 NA NA NA NA NA LTS-011 chr2 207027607 207834257 806651 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, EEF1B2, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, ADAM23) 0.295348634108504 11 0.197188281045853 0.780935981324309 814 0.426348653283963 2 2 0 -6.77533491899675 LTS-011 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.161 1 NA NA NA NA NA LTS-011 chr2 207908643 208866138 957496 * c(MIR2355, MIR4775, CREB1, METTL21A, CCNYL1, PLEKHM3, FZD5, KLF7) 0.368862895849928 20 0.105399990012983 1.12400813851097 851 0.618069553518694 3 2 1 -6.75473208514065 LTS-011 chr2 208866139 219029998 10163860 * c(LOC100130451, MIR548F2, LOC100507443, IDH1-AS1, MIR4776-1, MIR4776-2, VWC2L-IT1, LANCL1, CPS1, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, PIKFYVE, ERBB4, IKZF2, FN1, ABCA12, UNC80, RUFY4, CPS1-IT1, ACADL, IDH1, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, PLEKHM3, C2orf80, VWC2L, MAP2, MYL1, ATIC, SMARCAL1, MREG, PECR, PTH2R, MARCH4, BARD1, RPE, RPL37A, LINC00607, TNP1, TNS1, DIRC3, XRCC5, SPAG16, TMEM169 NA NA NA NA NA NA NA NA NA LTS-011 ) 0.345521206798851 89 0.157340866800966 0.966492992823446 4973 0.501965740820304 3 2 1 -6.83447146424288 LTS-011 NA NA NA NA LTS-011 chr2 219029999 219081899 51901 * c(ARPC2, CXCR1) NA 0 NA 1.232 1 NA NA NA NA NA LTS-011 chr2 219081900 219270173 188274 * c(ARPC2, AAMP, GPBAR1, PNKD, CATIP, MIR26B, CTDSP1, TMBIM1, SLC11A1) 0.383212577349711 23 0.0566541759464729 1.30394974156438 677 0.794782212901389 3 2 1 -6.74476556141215 LTS-011 chr2 219270174 220037148 766975 * c(LOC100129175, MIR3131, CRYBA2, SLC23A3, LINC00608, CYP27A1, CFAP65, CNPPD1, STK36, IHH, MIR375, PRKAG3, FEV, USP37, CTDSP1, BCS1L, RNF25, VIL1, WNT6, ZNF142, NHEJ1, WNT10A, PLCD4, CDK5R2, CNOT9, TTLL4) 0.374910594807175 42 0.0797906668893554 0.889252199248625 2040 0.492053542782631 3 2 1 -6.77229589794132 LTS-011 chr2 220037149 220166523 129375 * c(ABCB6, ZFAND2B, CNPPD1, DNAJB2, MIR153-1, ANKZF1, PTPRN, TUBA4A, ATG9A, FAM134A, GLB1L, TUBA4B, STK16) 0.374507187085573 8 0.157547215145175 1.21998667313245 961 0.492065013933604 3 2 1 -6.74418199322487 LTS-011 chr2 220166524 220166839 316 * PTPRN NA 0 NA 0.844 1 NA NA NA NA NA LTS-011 chr2 220166840 223494904 3328065 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, SGPP2, TMEM198, CCDC140, DES, EPHA4, OBSL1, DNPEP, GMPPA, INHA, RESP18, PAX3, ASIC4, PTPRN, SLC4A3, CHPF) 0.373572220220379 15 0.117360129515948 1.01365992185948 1838 0.418241651670297 3 2 1 -6.7358972496076 LTS-011 chr2 223494905 223496228 1324 * FARSB NA 0 NA 1.226 1 NA NA NA NA NA LTS-011 chr2 223496229 224461948 965720 * c(FARSB, MOGAT1, ACSL3, KCNE4, SCG2) 0.353089445188064 5 0.180146606962218 1.29841351050095 309 0.788862275188334 4 3 1 -6.74710726814405 LTS-011 chr2 224461949 232196688 7734740 * c(MIR4439, MIR5702, MIR5703, SP140, COL4A3, COL4A4, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LOC151484, DAW1, C2orf72, AGFG1, HTR2B, SP110, SPATA3-AS1, IRS1, CAB39, SERPINE2, PID1, DOCK10, C2orf83, MFF, PSMD1, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SP100, SCG2, FAM124B, TM4SF20, ARMC9, SPHKAP, SLC19A3, ITM2C, RHBDD1, CUL3, DNER, GPR55, TRIP12, SP140L) 0.379870791438618 80 0.104712744500178 0.922554287025129 4527 0.425678935432044 3 2 1 -6.98424149522569 LTS-011 chr2 232196689 232459053 262365 * c(MIR4777, NMUR1, LINC00471, C2orf57, SNORD82, NCL, SNORD20, SNORA75, ARMC9, B3GNT7) 0.431421345600087 8 0.0749147134127488 1.10307138603738 379 0.437786678964113 4 2 2 -6.83148352399764 LTS-011 chr2 232459054 232572327 113274 * character(0) NA 0 NA 2.595 1 NA NA NA NA NA LTS-011 chr2 232572328 232577506 5179 * PTMA 0.43 1 NA 2.13156427093863 46 0.779201884812072 8 8 0 -5.7644164907824 LTS-011 chr2 232577507 232578173 667 * PTMA NA 0 NA 1.302 1 NA NA NA NA NA LTS-011 chr2 232578174 234474325 1896152 * c(MIR1471, CHRND, CHRNG, DIS3L2, TIGD1, ALPI, ALPP, ALPPL2, NGEF, GIGYF2, ECEL1P2, INPP5D, KCNJ13, C2orf82, NEU2, NPPC, PDE6D, ATG16L1, USP40, PTMA, SAG, PRSS56, COPS7B, SCARNA6, SCARNA5, EFHD1, DGKD, ECEL1, EIF4E2) 0.361933176109866 54 0.133666074592079 0.920039272776616 2458 0.460729119322367 3 2 1 -6.80231017757161 LTS-011 chr2 234474326 234526272 51947 * USP40 NA 0 NA 0.514 1 NA NA NA NA NA LTS-011 chr2 234526273 234681570 155298 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0.357314064000908 13 0.110573504963893 0.576300976118442 267 0.434949291176008 1 1 0 -6.78079969712393 LTS-011 chr2 234681571 234978746 297176 * c(MSL3P1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, SPP2, TRPM8) 0.384885790572589 24 0.0610928848533947 0.86231704458649 545 0.54497025992988 3 2 1 -6.75266025609305 LTS-011 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 2.979 1 NA NA NA NA NA LTS-011 chr2 235401661 235404172 2512 * ARL4C NA 0 NA 2.25158273341867 56 1.45452616062691 9 NA NA -5.76441016034675 LTS-011 chr2 235404173 238483740 3079568 * c(ARL4C, COPS8, AGAP1, COL6A3, SH3BP4, GBX2, ASB18, PRLH, ACKR3, RAB17, MLPH, IQCA1) 0.389309473154792 48 0.0998514499480983 0.962062888097947 1314 0.478653831639918 3 2 1 -6.76545567302663 LTS-011 chr2 238483741 238657996 174256 * c(RAB17, LRRFIP1) 0.362157081049289 4 0.0227303028283098 1.407313983011 149 0.614226695250207 6 4 2 -6.74436014768792 LTS-011 chr2 238657997 238659737 1741 * LRRFIP1 NA 0 NA 0.696 1 NA NA NA NA NA LTS-011 chr2 238659738 239041787 382050 * c(UBE2F-SCLY, RAMP1, UBE2F, ESPNL, RBM44, SCLY, LRRFIP1) 0.37669407096003 2 0.0289913780286485 0.870718646301957 574 0.364242803619966 3 2 1 -6.78875528418677 LTS-011 chr2 239041788 239241623 199836 * c(LOC151174, TRAF3IP1, ESPNL, KLHL30, HES6, LOC643387, ILKAP, PER2) 0.374520396278788 24 0.0557404537872253 1.16185959776423 542 0.492474883147628 3 2 1 -6.74906624568853 LTS-011 chr2 239241624 241496800 2255177 * c(PP14571, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, TWIST2, OTOS, COPS9, OR6B3, LOC150935, LINC01107, TRAF3IP1, GPC1, OR6B2, FLJ43879, MIR149, NDUFA10, ANKMY1, ASB1, PRR21, MGC16025, HDAC4) 0.38094863657756 57 0.0781959815388365 0.92701564162178 1364 0.400724776455 3 2 1 -6.8101936703678 LTS-011 chr2 241496801 241508519 11719 * c(DUSP28, ANKMY1, RNPEPL1) NA 0 NA 1.90652080864183 65 0.649864171089147 7 NA NA -5.76442502551939 LTS-011 chr2 241508520 241511798 3279 * RNPEPL1 NA 0 NA 0.887 1 NA NA NA NA NA LTS-011 chr2 241511799 242836535 1324737 * c(BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, RTP5, GPR35, HDLBP, AQP12A, SEPT2, ANO7, THAP4, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.367293288636023 97 0.129946258386798 0.929254866285649 3065 0.77512045119291 3 2 1 -6.75120730604341 LTS-011 chr2 242836536 243037215 200680 * LOC728323 NA 0 NA 0.857784825451157 25 0.339469821928253 2 NA NA -5.76736645358328 LTS-011 chr3 239351 361508 122158 * CHL1 0.43 1 NA 0.947033091421354 9 0.196714330382354 3 3 0 -5.77503107572782 LTS-011 chr3 361509 3143527 2782019 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, IL5RA) 0.345208809196345 15 0.155946419369878 0.836508900669221 592 0.372721168952773 2 1 1 -6.82200075352253 LTS-011 chr3 3143528 3144389 862 * IL5RA NA 0 NA 1.197 1 NA NA NA NA NA LTS-011 chr3 3144390 4942387 1797998 * c(EGOT, BHLHE40-AS1, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.392951489018856 15 0.0645306866832325 1.0762151578534 794 0.506819821858069 3 2 1 -6.76575225950237 LTS-011 chr3 4942388 5020809 78422 * BHLHE40-AS1 NA 0 NA 2.105 1 NA NA NA NA NA LTS-011 chr3 5020810 5027029 6220 * c(BHLHE40-AS1, BHLHE40) NA 0 NA 1.94994427675426 87 0.829825680157794 7 NA NA -5.76442502925602 LTS-011 chr3 5027030 5164052 137023 * ARL8B NA 0 NA 1.086 1 NA NA NA NA NA LTS-011 chr3 5164053 7783195 2619143 * c(MIR4790, GRM7, ARL8B, EDEM1) 0.368692522026036 10 0.051001525031665 0.979864956442535 439 0.440260546436077 3 2 1 -6.78051277887632 LTS-011 chr3 8299330 8757460 458131 * c(LMCD1-AS1, LINC00312, LMCD1, SSUH2) 0.345406264834009 11 0.119663543472369 1.48361949568365 194 0.689923539133845 6 4 2 -6.75374702315783 LTS-011 chr3 8757461 8775441 17981 * SSUH2 NA 0 NA 0.639 1 NA NA NA NA NA LTS-011 chr3 8775442 10004510 1229069 * c(SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, PRRT3, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SSUH2, SETD5, RAD18, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, CAV3, SRGAP3) 0.36660830103734 65 0.101184736801251 1.04650649836475 2285 0.488735436035475 3 2 1 -6.74683177300957 LTS-011 chr3 10004511 11080629 1076119 * c(MIR885, GHRLOS, SLC6A1-AS1, FANCD2OS, CIDECP, FANCD2, LINC00606, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, SLC6A1, SLC6A11, VHL, LINC00852, TATDN2) 0.333051240761544 44 0.132536298829413 0.863606327465214 1324 0.51501610958446 3 2 1 -6.87737704011387 LTS-011 chr3 11080630 18308546 7227917 * c(MKRN2OS, FGD5P1, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, ATG7, GALNT15, CHCHD4, METTL6, TAMM41, FGD5, DAZL, FBLN2, CAND2, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, HACL1, LSM3, LINC00620, DPH3, HRH1, LOC339862, COL6A4P1, TPRXL, CCDC174, PPARG, TMEM40, RAF1, RPL32, RBSN, MRPS25, SLC6A1, SLC6A6, SYN2, BTD, MIR563, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, EAF1, OXNAD1, NA NA NA NA NA NA NA NA NA LTS-011 SH3BP5, VGLL4, TBC1D5, IQSEC1) 0.36900562021689 108 0.125052895350384 1.01918216598733 5171 0.468759218251472 3 2 1 -6.73846507404227 LTS-011 NA NA NA NA LTS-011 chr3 18308547 20053837 1745291 * c(MIR4791, KCNH8, PP2D1, EFHB, LOC339862, RAB5A, SATB1) 0.391463767832856 8 0.0639362126319216 0.796061339278183 561 0.331091807617315 2 1 1 -6.7547884995432 LTS-011 chr3 20053838 20081505 27668 * character(0) NA 0 NA 1.644 1 NA NA NA NA NA LTS-011 chr3 20081506 32510214 12428709 * c(MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CMTM7, OSBPL10, LRRC3B, SGO1, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, GPD1L, RBMS3, NKIRAS1, LINC00692, GADL1, ZNF860, VENTXP7, OXSM, NGLY1, RARB, RPL15, AZI2, THRB-AS1, LINC00693, TGFBR2, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, EOMES, KAT2B, SLC4A7, NR1D2) 0.375270083471762 77 0.114218730156326 1.03982596342701 3142 0.93466208086895 3 2 1 -6.73739601769697 LTS-011 chr3 32510215 32522837 12623 * CMTM6 NA 0 NA 1.837 1 NA NA NA NA NA LTS-011 chr3 32522838 32758705 235868 * c(CNOT10, DYNC1LI1, CMTM6) 0.300296431838042 3 0.240501559246505 1.32610832566896 199 0.701428156591932 5 4 1 -6.73784336830701 LTS-011 chr3 32758706 33038649 279944 * c(CCR4, TRIM71, CNOT10, GLB1) 0.422260077355025 3 0.01670329308849 0.752897894638411 203 0.410529020855221 2 1 1 -7.48900592062659 LTS-011 chr3 33038650 37315155 4276506 * c(PDCD6IP, CRTAP, ARPP21, CLASP2, FBXL2, SUSD5, GLB1, GOLGA4, MIR128-2, MLH1, TMPPE, STAC, UBP1, DCLK3, LRRFIP2, EPM2AIP1, TRANK1) 0.375173218210798 28 0.115475706920932 0.998335412164529 2133 0.446154569500307 3 2 1 -6.74082869796577 LTS-011 chr3 37315156 37318147 2992 * GOLGA4 NA 0 NA 0.555 1 NA NA NA NA NA LTS-011 chr3 37318148 37323571 5424 * GOLGA4 NA 0 NA 0.476335394553598 42 0.265359013269467 0 NA NA -5.76587919085587 LTS-011 chr3 37323572 38184370 860799 * c(CTDSPL, GOLGA4, ACAA1, C3orf35, ITGA9, MIR26A1, MYD88, VILL, PLCD1, DLEC1) 0.392973441410286 8 0.0694507790761609 1.06186054306829 1158 0.473813771173591 3 2 1 -6.75480545561185 LTS-011 chr3 38184371 38232412 48042 * c(MYD88, OXSR1) 0 1 NA 1.54133159886494 21 0.776729805322411 6 6 0 -5.76460486726877 LTS-011 chr3 38232413 38296735 64323 * OXSR1 0.237128286034569 3 0.206572021338806 1.02433840252227 131 0.601928196684284 2 2 0 -6.73970676356912 LTS-011 chr3 38296736 38743591 446856 * c(ACVR2B-AS1, SCN5A, SCN10A, ACVR2B, SLC22A14, SLC22A13, EXOG, XYLB, OXSR1) 0.243778758333352 15 0.193741064310073 0.827498068847874 739 0.477208434455734 2 2 0 -6.73343502702282 LTS-011 chr3 38743592 38887970 144379 * c(SCN11A, SCN10A) 0.32 1 NA 0.707609546834447 161 0.252433258352302 2 2 0 -5.7906572161462 LTS-011 chr3 38887971 38988381 100411 * SCN11A 0.383222159874192 3 0.0821462111116514 0.71482032887623 190 0.241427121275175 2 1 1 -6.78258300251258 LTS-011 chr3 38988382 38991584 3203 * SCN11A NA 0 NA 1.214 1 NA NA NA NA NA LTS-011 chr3 38991585 39175931 184347 * c(SCN11A, TTC21A, WDR48, GORASP1) 0.377216402517674 18 0.151086360189443 1.0588294478659 387 0.432524966100328 3 2 1 -6.73417263206477 LTS-011 chr3 39175932 39176522 591 * TTC21A NA 0 NA 2.429 1 NA NA NA NA NA LTS-011 chr3 39176523 39224757 48235 * c(XIRP1, TTC21A, CSRNP1) 0.389956639621319 9 0.0307507904144123 1.4885308741856 135 0.463508105839698 5 3 2 -6.74892935748961 LTS-011 chr3 39224758 40575101 1350344 * c(EIF1B, CCR8, CX3CR1, XIRP1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, RPL14, ENTPD3) 0.422546479292667 21 0.0700752996358033 0.872542197687035 899 0.62688604424049 2 1 1 -6.79259973662554 LTS-011 chr3 40575102 42846031 2270930 * c(CCDC13-AS1, LYZL4, KLHL40, CTNNB1, CCDC13, TRAK1, HIGD1A, ZNF621, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.356768186555177 27 0.118864283738716 1.02244680818289 1527 0.466243455693332 3 2 1 -6.75760041562015 LTS-011 chr3 42846032 42897464 51433 * ACKR2 NA 0 NA 0.461 1 NA NA NA NA NA LTS-011 chr3 42897465 43407966 510502 * c(KRBOX1, SNRK-AS1, ACKR2, CYP8B1, ZNF662, SNRK, ANO10, FAM198A, POMGNT2) 0.376694592439419 13 0.125032303518239 0.82363365565973 615 0.400903593570354 2 1 1 -6.75849571290394 LTS-011 chr3 43407967 44303925 895959 * c(TOPAZ1, MIR138-1, ABHD5, ANO10) 0 1 NA 0.753689409791382 230 0.30207509291882 2 2 0 -5.79839490836678 LTS-011 chr3 44303926 44778594 474669 * c(ZNF197, ZNF501, TCAIM, ZNF660, ZNF445, TOPAZ1, ZKSCAN7, ZNF35, ZNF502) 0.0539936320437392 6 0.15962508157137 0.852972540097514 959 0.384620890775771 3 3 0 -7.23557574622016 LTS-011 chr3 44778595 44790198 11604 * character(0) NA 0 NA 0.338 1 NA NA NA NA NA LTS-011 chr3 44790199 44794488 4290 * KIAA1143 NA 0 NA 0.433352231216304 98 0.198655425861665 0 NA NA -5.76486751199896 LTS-011 chr3 44794489 44932118 137630 * c(TMEM42, KIF15, KIAA1143, MIR564, TGM4) 0.194628812231383 3 0.285788383248865 0.828394666683352 273 0.537365914284624 3 3 0 -6.745485525172 LTS-011 chr3 44932119 44943069 10951 * TGM4 0.438 1 NA 0.806523261731655 19 0.313916581089692 2 2 0 -5.76441485571941 LTS-011 chr3 44943070 44986780 43711 * c(ZDHHC3, TGM4) 0.42220903027727 5 0.055603057469891 0.801652847977881 213 0.309012029762671 2 1 1 -6.80863148451919 LTS-011 chr3 44986781 45883676 896896 * c(LARS2-AS1, SACM1L, EXOSC7, LARS2, TMEM158, ZDHHC3, LZTFL1, SLC6A20, LIMD1-AS1, CDCP1, CLEC3B, LIMD1) 0.406680992384344 29 0.0633433251991924 1.08001619315843 1032 0.434410901813405 4 2 2 -6.78256748719748 LTS-011 chr3 45883677 45896445 12769 * LZTFL1 NA 0 NA 0.645 1 NA NA NA NA NA LTS-011 chr3 45896446 45943456 47011 * c(CCR9, LZTFL1) NA 0 NA 0.412471832930066 39 0.101761556125058 0 NA NA -5.76762603884099 LTS-011 chr3 45943457 45943543 87 * c(CCR9, LZTFL1) NA 0 NA 0.725 1 NA NA NA NA NA LTS-011 chr3 45943544 47049615 1106072 * c(LOC100132146, PRSS46, CXCR6, CCR9, CCR1, CCR3, CCR5, CCDC12, NBEAL2, ALS2CL, TMIE, XCR1, PRSS50, PRSS42, PRSS45, LTF, MYL3, LZTFL1, PTH1R, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.349483291565034 46 0.156331323184753 0.948950325500988 1966 0.444706149800781 3 2 1 -6.77490094306788 LTS-011 chr3 47049616 47278024 228409 * c(NRADDP, NBEAL2, KIF9-AS1, SETD2, KIF9) 0 1 NA 0.997021952142282 305 0.482880121092169 3 3 0 -5.7647349850633 LTS-011 chr3 47278025 48419897 1141873 * c(MIR1226, MIR4443, NME6, CSPG5, DHX30, SCAP, KLHL18, PTPN23, FBXW12, KIF9-AS1, MAP4, ZNF589, ELP6, KIF9, SPINK8, SMARCC1, CAMP, CDC25A) 0.223121372390537 9 0.200952730760246 0.930150514485293 1745 0.385187182969872 3 3 0 -6.7835207534824 LTS-011 chr3 48419898 48454468 34571 * c(FBXW12, PLXNB1) 0.45 1 NA 0.98292819023906 113 0.311920077327024 3 3 0 -5.76471388133079 LTS-011 chr3 48454469 48606955 152487 * c(TREX1, COL7A1, SHISA5, TMA7, PFKFB4, PLXNB1, CCDC51, ATRIP, UCN2) 0.416118580002685 10 0.049037513984477 1.02420330797122 657 0.391340967441687 4 2 2 -6.79956714303872 LTS-011 chr3 48606956 48606994 39 * COL7A1 NA 0 NA 0.492 1 NA NA NA NA NA LTS-011 chr3 48606995 48624145 17151 * c(MIR711, COL7A1) NA 0 NA 0.682928332210566 261 0.20103224994324 1 NA NA -5.7680507870543 LTS-011 chr3 48624146 48624401 256 * COL7A1 NA 0 NA 0.881 1 NA NA NA NA NA LTS-011 chr3 48624402 49573078 948677 * c(MIR4271, MIR4793, ARIH2, USP19, WDR6, COL7A1, DAG1, CELSR3, KLHDC8B, LAMB2P1, NDUFAF3, AMT, GPX1, CCDC36, IMPDH2, C3orf62, RHOA, LAMB2, MIR191, TMEM89, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, ARIH2OS, C3orf84, CCDC71, SLC26A6, TCTA, USP4, UQCRC1, SLC25A20, NICN1) 0.399995822827876 39 0.100667897767986 1.00085996036165 3035 0.422330109880213 3 2 1 -6.7558600738347 LTS-011 chr3 49573079 49662363 89285 * c(BSN-AS2, BSN) NA 0 NA 0.737 1 NA NA NA NA NA LTS-011 chr3 49662364 49694740 32377 * BSN 0.354471936620372 3 0.0571168393149808 0.574274581495335 169 0.225794105686714 1 1 0 -6.87565388372787 LTS-011 chr3 49694741 49726178 31438 * c(APEH, MST1, BSN) 0.411322042220495 9 0.0615909445003439 1.02733388952789 298 0.474717322022358 4 2 2 -6.74838938429573 LTS-011 chr3 49726179 49743390 17212 * c(MST1, RNF123) 0 1 NA 1.02208453860473 111 0.551952220065336 3 3 0 -5.76441019337464 LTS-011 chr3 49743391 50330582 587192 * c(RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, SLC38A3, LSMEM2, GNAI2, GNAT1, GMPPB, AMIGO3, CDHR4, FAM212A, MST1R, RNF123, SEMA3F, UBA7, IFRD2, SEMA3B, CAMKV, HYAL3, MON1A, IP6K1) 0.351141737408891 5 0.197664614941572 0.954091904944529 1741 0.369605640709231 3 2 1 -6.7582999127632 LTS-011 chr3 50330583 50403773 73191 * c(NPRL2, CYB561D2, TMEM115, RASSF1, TUSC2, NAT6, HYAL1, ZMYND10, HYAL3, HYAL2, CACNA2D2) 0.404 1 NA 1.38833569015801 622 0.446227761546939 5 5 0 -5.76465670314473 LTS-011 chr3 50403774 50403922 149 * CACNA2D2 NA 0 NA 0.868 1 NA NA NA NA NA LTS-011 chr3 50403923 51472125 1068203 * c(MIR4787, CISH, DOCK3, RBM15B, C3orf18, HEMK1, MAPKAPK3, MANF, CACNA2D2, DCAF1) 0.180905941840644 5 0.205543182810815 0.995997388493346 1141 0.436365253519154 3 3 0 -6.73831089960751 LTS-011 chr3 51472126 51970527 498402 * c(IQCF4, IQCF1, RAD54L2, GRM2, IQCF2, IQCF5, IQCF3, IQCF6, TEX264, RRP9, DCAF1) 0.239750103169089 6 0.188394709762951 0.780391207249276 464 0.416958634786918 2 2 0 -6.73655348911167 LTS-011 chr3 51970528 52325910 355383 * c(LINC00696, PARP3, ABHD14A-ACY1, TWF2, GPR62, GLYCTK, PPM1M, DUSP7, ALAS1, ABHD14A, POC1A, MIRLET7G, TLR9, PCBP4, RPL29, WDR82, ABHD14B, RRP9, ACY1) 0.33861128776256 8 0.205798748781425 1.13714793628432 1021 0.407265598173936 4 3 1 -6.74209804409756 LTS-011 chr3 52325911 52326267 357 * GLYCTK NA 0 NA 0.836 1 NA NA NA NA NA LTS-011 chr3 52326268 52404454 78187 * c(GLYCTK, DNAH1, MIR135A1) 0 1 NA 0.849992300959992 231 0.505497944859056 2 2 0 -5.76476682457322 LTS-011 chr3 52404455 52437647 33193 * c(DNAH1, BAP1) NA 0 NA 0.87201251285701 252 0.309946221490564 2 NA NA -5.76541580862024 LTS-011 chr3 52437648 52467263 29616 * c(PHF7, BAP1) 0.49 1 NA 1.29718855695468 131 0.67948258102862 4 4 0 -5.76452527519665 LTS-011 chr3 52467264 52507863 40600 * c(NISCH, SEMA3G, TNNC1) 0.47 2 0 1.44199733053283 203 0.526134086904951 0 0 0 -Inf LTS-011 chr3 52507864 52510381 2518 * NISCH NA 0 NA 0.872 1 NA NA NA NA NA LTS-011 chr3 52510382 52802402 292021 * c(SNORD19B, NISCH, STAB1, GNL3, SPCS1, SMIM4, PBRM1, GLT8D1, NT5DC2, NEK4, SNORD19, SNORD69) 0.46121517689606 29 0.0337954947882154 1.04375010605623 1137 0.450153443624977 4 2 2 -8.17835133769452 LTS-011 chr3 52802403 52812496 10094 * c(ITIH1, NEK4) 0 1 NA 1.36314284148761 39 1.5053960087133 5 5 0 -5.76441729102331 LTS-011 chr3 52812497 53529274 716778 * c(TMEM110-MUSTN1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, SFMBT1, PRKCD, DCP1A, TKT, CACNA1D, RFT1) 0.237359616447213 18 0.162146679742861 1.05092749436263 1043 0.530934426676633 3 3 0 -6.77301952054414 LTS-011 chr3 53529275 53531209 1935 * CACNA1D NA 0 NA 0.739 1 NA NA NA NA NA LTS-011 chr3 53531210 53781331 250122 * CACNA1D 0.304345812232815 3 0.265583006484476 0.902673125641757 137 0.472878915654695 2 2 0 -6.76949624693043 LTS-011 chr3 53781332 53804489 23158 * CACNA1D 0.492 1 NA 0.785180839432048 39 0.275326615021634 2 2 0 -5.76463766305595 LTS-011 chr3 53804490 56695127 2890638 * c(MIR3938, CACNA2D3-AS1, FAM208A, ERC2, CCDC66, CHDH, IL17RB, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, CACNA1D, ESRG, ACTR8) 0.407192498170039 53 0.0941219794982736 0.878820672368308 1280 0.40705803272967 2 1 1 -6.79672768775658 LTS-011 chr3 56695128 56696380 1253 * FAM208A NA 0 NA 3.06 1 NA NA NA NA NA LTS-011 chr3 56696381 57291049 594669 * c(ARHGEF3-AS1, FAM208A, APPL1, SPATA12, ARHGEF3, IL17RD, HESX1) 0.371575737563018 19 0.098018079248928 1.09969652930873 591 0.451280475512349 3 2 1 -6.74812110869788 LTS-011 chr3 57291050 57561282 270233 * c(ASB14, DNAH12, PDE12, APPL1, ARF4) 0.347584744271499 10 0.140535049009135 0.803933998765044 614 0.405445934798861 3 2 1 -6.82219505611821 LTS-011 chr3 57561283 58178084 616802 * c(DENND6A, FLNB, ARF4, SLMAP) 0.428379301957059 19 0.051564414947606 1.27688029751409 793 0.565155999425199 4 2 2 -6.88385642355518 LTS-011 chr3 58178085 58384950 206866 * c(RPP14, DNASE1L3, PXK, ABHD6) 0.452 1 NA 0.965851712144759 265 0.477638552964943 3 3 0 -5.76607180390123 LTS-011 chr3 58384951 58516383 131433 * c(KCTD6, PDHB, PXK, ACOX2) 0.46 1 NA 0.954066403655278 211 0.374613823032642 3 3 0 -5.76697314213454 LTS-011 chr3 58516384 58639539 123156 * c(FAM107A, FAM3D, ACOX2) 0.349071355981634 4 0.113338725361929 1.16960438535155 193 0.513875658774909 4 3 1 -6.75347885760224 LTS-011 chr3 58639540 58641240 1701 * FAM3D NA 0 NA 0.396 1 NA NA NA NA NA LTS-011 chr3 58641241 58923525 282285 * c(FAM3D, C3orf67) 0.394062698074216 2 0.0551543289325507 0.680253504087803 165 0.217212086541108 2 1 1 -6.85903689840129 LTS-011 chr3 58923526 59025208 101683 * C3orf67 NA 0 NA 1.164 1 NA NA NA NA NA LTS-011 chr3 59025209 62358174 3332966 * c(PTPRG-AS1, C3orf67, FHIT, FEZF2, C3orf14, PTPRG) 0.326825010270441 7 0.227922292522191 1.18560405445552 458 0.655728423770171 4 3 1 -6.7388338446228 LTS-011 chr3 62358175 62358245 71 * FEZF2 NA 0 NA 0.762 1 NA NA NA NA NA LTS-011 chr3 62358246 63849417 1491172 * c(SYNPR-AS1, C3orf49, SNTN, SYNPR, LINC00698, FEZF2, THOC7, CADPS) 0.321260544144934 15 0.211267332340534 0.907990159293813 564 0.541397628433917 3 2 1 -6.82193924969437 LTS-011 chr3 63849418 63849458 41 * THOC7 NA 0 NA 1.819 1 NA NA NA NA NA LTS-011 chr3 63849459 63989109 139651 * c(ATXN7, THOC7) NA 0 NA 1.47382389106761 183 0.655509341586727 5 NA NA -5.76454518760099 LTS-011 chr3 63989110 63996184 7075 * c(PSMD6-AS2, ATXN7) NA 0 NA 0.768 1 NA NA NA NA NA LTS-011 chr3 63996185 66432046 2435862 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, PRICKLE2, LRIG1, ADAMTS9, MIR548A2, MAGI1, PSMD6) 0.358534666546409 14 0.157048673073941 1.0567774703518 847 0.393702790769691 3 2 1 -6.75646263702408 LTS-011 chr3 66432047 66432674 628 * c(SLC25A26, LRIG1) NA 0 NA 1.571 1 NA NA NA NA NA LTS-011 chr3 66432675 67048836 616162 * c(SLC25A26, LRIG1, KBTBD8) 0.40747623649882 3 0.0120968315410827 1.5813361258356 134 0.499043078465693 6 3 3 -6.84087925939351 LTS-011 chr3 67048837 67049346 510 * KBTBD8 NA 0 NA 0.768 1 NA NA NA NA NA LTS-011 chr3 67049347 69036648 1987302 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.343289237366814 7 0.164204866234951 0.79246410575007 397 0.421133047865249 2 1 1 -6.81421590073411 LTS-011 chr3 69036649 69036678 30 * EOGT 0.387 1 NA 1.519 1 NA NA NA NA NA LTS-011 chr3 69036679 73431702 4395024 * c(MIR1284, MIR3136, ARL6IP5, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.373808268257298 16 0.118610549699426 1.17478121966658 1696 0.58340794510919 4 2 2 -6.78283168969154 LTS-011 chr3 73431703 74418526 986824 * c(PDZRN3, CNTN3) 0.424710552505707 6 0.093732420574029 0.829145144327828 277 0.340025688543316 2 1 1 -6.76886617787111 LTS-011 chr3 74418527 74418976 450 * CNTN3 NA 0 NA 0.928 1 NA NA NA NA NA LTS-011 chr3 74418977 88102908 13683932 * c(ZNF717, MIR1324, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, CNTN3, POU1F1, ROBO1, ROBO2, FAM86DP, CGGBP1) 0.351110335804943 175 0.102531175922862 1.02793318225686 1555 0.554697751171677 3 2 1 -6.78444691190622 LTS-011 chr3 88102909 88202670 99762 * c(C3orf38, ZNF654, CGGBP1) 0.476 1 NA 1.48473564020219 246 0.6500033339757 5 5 0 -5.76457096381533 LTS-011 chr3 88202671 88205129 2459 * C3orf38 NA 0 NA 0.727 1 NA NA NA NA NA LTS-011 chr3 88205130 89530956 1325827 * c(EPHA3, C3orf38) 0.471283482861756 9 0.0180331484895024 0.870158902157186 220 0.30611253774017 2 1 1 -10.8713642849686 LTS-011 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 0.918449222767299 33 0.693340390953298 3 NA NA -5.77486764893645 LTS-011 chr3 93591838 93593119 1282 * PROS1 0.455 1 NA 0.717134204469865 25 0.225607882545506 2 2 0 -5.76464942236901 LTS-011 chr3 93593120 97806123 4213004 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, GABRR3, LINC00879, EPHA6, STX19, PROS1, NSUN3, OR5AC2, ARL6, MINA) 0.403322885491799 9 0.155558759887631 1.07795364010681 988 0.53033967833474 3 2 1 -6.77212392909644 LTS-011 chr3 97806124 98225634 419511 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.264217811031312 5 0.242352635636586 0.618617449023035 231 0.452890991870669 1 1 0 -6.77279922005716 LTS-011 chr3 98225635 107524549 9298915 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, ZPLD1, DCBLD2, FAM172BP, CPOX, LOC152225, ALCAM, ABI3BP, ZBTB11, GPR15, PDCL3P4, DUBR, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, BBX, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, MIR548A3, CEP97, CMSS1, CCDC54, ADGRG7, CBLB, NXPE3, TOMM70) 0.428183478437529 39 0.104319308944334 1.20151957876622 3198 0.615406946750667 4 2 2 -6.77665555940152 LTS-011 chr3 107524550 107941402 416853 * c(LINC00635, LINC00636, IFT57, BBX, CD47) 0.364954702332774 8 0.165449981651771 1.52087674607513 397 0.812424723750413 6 4 2 -6.73530098590062 LTS-011 chr3 107941403 108047068 105666 * c(HHLA2, IFT57) NA 0 NA 0.594 1 NA NA NA NA NA LTS-011 chr3 108047069 116164345 8117277 * c(ZBTB20-AS1, PVRL3-AS1, MIR4796, MIR4446, CFAP44-AS1, CD96, HHLA2, CD200R1, DPPA2, CCDC80, BTLA, SPICE1, DRD3, TIGIT, USF3, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, MORC1, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, FLJ22763, LINC01205, LSAMP, CD200, TRAT1, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, DPPA4, ABHD10, CFAP44, CCDC191, KIAA1524, ATG3, LINC00488, MIR567, MIR568, ZNF80, ZBED2, C3orf52, NA NA NA NA NA NA NA NA NA LTS-011 QTRT2, NAA50, RETNLB, PHLDB2, BOC, GUCA1C, DZIP3) 0.420040137691006 108 0.119347561109053 1.12700055083327 5135 0.569363609219621 4 2 2 -6.85514122350067 LTS-011 NA NA NA NA LTS-011 chr3 116164346 116363133 198788 * LSAMP NA 0 NA 0.543 1 NA NA NA NA NA LTS-011 chr3 116363134 116569114 205981 * TUSC7 NA 0 NA 0.284543154750619 40 0.23476236621261 0 NA NA -6.00872531186755 LTS-011 chr3 116569115 120976051 4406937 * c(IGSF11-AS1, COX17, FSTL1, LRRC58, ADPRH, IGSF11, C3orf30, GPR156, RABL3, GSK3B, GTF2E1, HGD, MIR198, NDUFB4, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, UPK1B, B4GALT4, NR1I2, MAATS1, CD80, STXBP5L) 0.422696610215849 46 0.1350613118958 1.12074674584746 2336 0.544259530863449 4 2 2 -6.82043914335373 LTS-011 chr3 120976052 121139490 163439 * STXBP5L 0 1 NA 0.842652342424276 99 0.614424594858018 2 2 0 -5.76473575848984 LTS-011 chr3 121139491 121347451 207961 * c(POLQ, ARGFX, FBXO40, STXBP5L) 0.264525052633824 10 0.234599919484688 0.942182646289188 446 0.52131042123475 2 2 0 -6.74683242302272 LTS-011 chr3 121347452 121348499 1048 * FBXO40 0.483 1 NA 0.993367658079427 23 0.89453980042559 3 3 0 -5.76441071471412 LTS-011 chr3 121348500 121661597 313098 * c(GOLGB1, HCLS1, FBXO40, EAF2, SLC15A2, IQCB1) 0.430704785285901 14 0.0634942240169646 1.10472144193816 662 0.428919816157185 4 2 2 -6.86175807761276 LTS-011 chr3 121661598 121712631 51034 * c(ILDR1, SLC15A2) 0 1 NA 1.26841185455314 59 1.55499606686703 4 4 0 -5.76442331621362 LTS-011 chr3 121712632 122324731 612100 * c(CCDC58, CSTA, DTX3L, PARP15, FAM162A, ILDR1, KPNA1, WDR5B, PARP9, CASR, CD86) 0.271060260154044 13 0.214455840891097 1.15013429798497 919 0.625170629367324 4 3 1 -6.77974827409846 LTS-011 chr3 122324732 122406060 81329 * c(PARP15, PARP14) 0.492 1 NA 1.01982935716873 115 0.440151467064248 3 3 0 -5.76441033536299 LTS-011 chr3 122406061 123247343 841283 * c(LOC100129550, PDIA5, ADCY5, HACD2, SEC22A, SEMA5B, PARP14, HSPBAP1, DIRC2) 0.426498020709545 32 0.117214168470892 1.09457622451381 1000 0.543468200596925 4 2 2 -6.78094837829349 LTS-011 chr3 123247344 123262509 15166 * HACD2 NA 0 NA 1.87 1 NA NA NA NA NA LTS-011 chr3 123262510 123687731 425222 * c(MYLK-AS1, HACD2, MYLK, CCDC14) 0.448162678741452 4 0.0193971647412708 1.4047447972882 532 0.698505082492838 4 2 2 -8.99023030543876 LTS-011 chr3 123687732 123699253 11522 * ROPN1 NA 0 NA 0.529909144524892 83 0.358811467368988 1 NA NA -5.76537509417465 LTS-011 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 1.327 1 NA NA NA NA NA LTS-011 chr3 123699426 125691188 1991763 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.453356650429034 27 0.0269658431197079 1.11641860091177 1585 0.516390120684847 4 2 2 -8.39255666324992 LTS-011 chr3 125691189 125725475 34287 * c(ROPN1B, SLC41A3) NA 0 NA 0.488505955747659 73 0.430138168042904 0 NA NA -5.76901352205411 LTS-011 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 0.714 1 NA NA NA NA NA LTS-011 chr3 125725550 128807097 3081548 * c(ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, C3orf22, DNAJB8, CHST13, KBTBD12, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, KIAA1257, EEFSEC, RPN1, TXNRD3NB, LOC653712, RAB7A, ZXDC, EFCC1, ABTB1, CHCHD6, RUVBL1, LOC90246) 0.398155299762514 64 0.143749464284716 1.13998012439327 2766 0.56700382503264 4 2 2 -6.76528542827981 LTS-011 chr3 128807098 128808125 1028 * c(ISY1-RAB43, RAB43) NA 0 NA 0.32 1 NA NA NA NA NA LTS-011 chr3 128808126 128840426 32301 * c(ISY1-RAB43, RAB43) NA 0 NA 0.696045404070874 65 0.322158952047922 1 NA NA -5.76799703984022 LTS-011 chr3 128840427 128846253 5827 * c(ISY1-RAB43, RAB43) NA 0 NA 1.765 1 NA NA NA NA NA LTS-011 chr3 128846254 129694713 848460 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, H1FX-AS1, IFT122, HMCES, ISY1, RHO, SNORA7B, TRH, CNBP, MBD4, H1FX, EFCAB12) 0.431648844063256 21 0.119619177471874 1.31922537147758 1150 0.595261172888835 4 2 2 -6.77614524409473 LTS-011 chr3 129694714 129694722 9 * TRH NA 0 NA 0.99 1 NA NA NA NA NA LTS-011 chr3 129694723 130394742 700020 * c(COL6A6, COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.38969392728591 5 0.210750326215643 0.868169722961284 598 0.33566466395999 2 1 1 -6.7510185387435 LTS-011 chr3 130394743 133926299 3531557 * c(NPHP3-ACAD11, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, DNAJC13, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, SNORA58, TF, NEK11, UBA5, C3orf36, ACAD11, BFSP2) 0.40913590274165 33 0.158687395195521 1.18175430403301 2679 0.506417710517101 4 2 2 -6.74634843124885 LTS-011 chr3 133926300 133926302 3 * RYK NA 0 NA 2.078 1 NA NA NA NA NA LTS-011 chr3 133926303 134094408 168106 * c(AMOTL2, RYK) 0.463772958411325 5 0.0327978657842244 2.03984732816078 136 0.691135375088952 8 4 4 -8.32732440850743 LTS-011 chr3 134094409 134156695 62287 * MIR4788 NA 0 NA 0.849 1 NA NA NA NA NA LTS-011 chr3 134156696 134898742 742047 * c(MIR4788, EPHB1, ANAPC13, KY, CEP63) 0.484 1 NA 0.936323380711769 271 0.373401776511843 3 3 0 -5.78811073201056 LTS-011 chr3 134898743 134978641 79899 * EPHB1 0 1 NA 0.980718910933822 47 0.656090525048396 3 3 0 -5.76458829452554 LTS-011 chr3 134978642 138739372 3760731 * c(STAG1, DZIP1L, EPHB1, MRAS, ARMC8, NME9, PRR23B, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, PIK3CB, IL20RB, MSL2, FAIM, PPP2R3A, FOXL2, PRR23A, CEP70, SLC35G2, ESYT3, SOX14) 0.373168613855433 44 0.186306449226149 1.10186140787599 2339 0.542823213874632 3 2 1 -6.77850583555963 LTS-011 chr3 138739373 139090736 351364 * c(PISRT1, PRR23B, PRR23C, MRPS22, BPESC1, COPB2) 0.42 1 NA 1.26862261553008 185 0.882905545509497 4 4 0 -5.7646945439365 LTS-011 chr3 139090737 140992951 1902215 * c(TRIM42, NMNAT3, SLC25A36, RBP1, RBP2, CLSTN2, SPSB4, PXYLP1, COPB2) 0.455658615271418 9 0.0668844359905784 1.10280702951412 699 0.526603838800227 4 2 2 -7.13909942071599 LTS-011 chr3 140992952 141464037 471086 * c(ZBTB38, RASA2, PXYLP1, RNF7) 0.470045837419346 7 0.0195691691431287 1.41848718456395 464 0.560412077941627 4 2 2 -10.4168539092127 LTS-011 chr3 141464038 141464148 111 * RNF7 NA 0 NA 1.191 1 NA NA NA NA NA LTS-011 chr3 141464149 141682750 218602 * c(GRK7, ATP1B3, TFDP2, RNF7) 0.477844140200873 3 0.0178978583448784 1.02891438073999 249 0.421356403816816 4 2 2 -11.3067296140684 LTS-011 chr3 141682751 141707772 25022 * TFDP2 0 1 NA 1.14675803488982 20 0.544632998111186 4 4 0 -5.76464804483822 LTS-011 chr3 141707773 142028326 320554 * c(GK5, XRN1, TFDP2) 0.330070546670681 10 0.244245982566756 1.17901621133018 231 0.685344111890785 4 3 1 -6.73373816787727 LTS-011 chr3 142028327 142078759 50433 * XRN1 0.438 1 NA 1.23618705428754 105 0.419033273439096 4 4 0 -5.76441748208085 LTS-011 chr3 142078760 148603994 6525235 * c(LOC100289361, LOC100507389, SLC9A9-AS1, CPA3, CPB1, AGTR1, C3orf58, U2SURP, PCOLCE2, SLC9A9, PAQR9, PLSCR5, PLOD2, PLS1, PLSCR1, XRN1, ATR, PLSCR2, PLSCR4, TRPC1, ZIC1, ZIC4, CHST2) 0.414324245397258 35 0.131757416515059 1.15305877595367 2182 0.593317459741315 4 2 2 -6.78191416892153 LTS-011 chr3 148603995 148614293 10299 * CPA3 NA 0 NA 0.721 1 NA NA NA NA NA LTS-011 chr3 148614294 148703560 89267 * CPA3 0.372 1 NA 0.543487208106816 55 0.221325704200997 1 1 0 -5.77731819356408 LTS-011 chr3 148703561 149485302 781742 * c(WWTR1-AS1, HLTF-AS1, TM4SF18, CP, WWTR1, GYG1, ANKUB1, TM4SF1, COMMD2, HLTF, TM4SF4, HPS3) 0.445100755703456 18 0.0448869676997795 1.36287667576685 984 0.570433751236173 4 2 2 -7.24865830419117 LTS-011 chr3 149485303 149700623 215321 * c(RNF13, ANKUB1, PFN2, LOC646903) 0.18180725818253 2 0.199404112294606 0.85178862837423 191 0.537954354236179 3 3 0 -6.75066978060633 LTS-011 chr3 149700624 149700690 67 * character(0) NA 0 NA 1.314 1 NA NA NA NA NA LTS-011 chr3 149700691 150127545 426855 * TSC22D2 NA 0 NA 2.50829758729452 40 1.13006701610897 10 NA NA -5.76445145705418 LTS-011 chr3 150127546 150600723 473178 * c(CLRN1-AS1, ERICH6, SERP1, SELENOT, SIAH2, EIF2A, TSC22D2) 0.442775979597547 8 0.0503868959722097 1.31810480612798 440 0.675069471647953 4 2 2 -7.09937607601469 LTS-011 chr3 150600724 151599492 998769 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, AADACP1, IGSF10, GPR171, AADACL2, P2RY13, GPR87, SUCNR1, P2RY12, CLRN1, P2RY14) 0.403536800758978 28 0.146235658185231 0.939322203748279 1006 0.946194155543025 2 1 1 -6.74691873739674 LTS-011 chr3 151599493 152886185 1286693 * c(MBNL1-AS1, MBNL1, P2RY1, SUCNR1, RAP2B, TMEM14EP) 0.430851312581813 2 0.0707106781186548 1.41774420015978 322 0.666957620549451 4 2 2 -6.86448888868195 LTS-011 chr3 152886186 156864388 3978203 * c(TIPARP-AS1, LINC00881, ARHGEF26-AS1, LOC100507537, KCNAB1-AS2, KCNAB1-AS1, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, LINC00880, GPR149, LEKR1, MME, CCNL1, RAP2B, PA2G4P4, SSR3, LINC00886, KCNAB1, GMPS, SLC33A1) 0.406074225336596 35 0.152130041674325 1.14520124921605 1604 0.590162743666056 4 2 2 -6.7667083883356 LTS-011 chr3 156864389 156978676 114288 * c(CCNL1, VEPH1) NA 0 NA 1.96349721648763 124 0.968602542392812 8 NA NA -5.76457079348627 LTS-011 chr3 156978677 157363735 385059 * c(PQLC2L, PTX3, VEPH1) 0.446781074877745 3 0.0217025344142107 1.05687393717575 222 0.49401119295253 4 2 2 -8.58051223785566 LTS-011 chr3 157363736 157813715 449980 * character(0) NA 0 NA 1.753 1 NA NA NA NA NA LTS-011 chr3 157813716 157818193 4478 * SHOX2 NA 0 NA 2.33659256808397 69 1.29469765468634 9 NA NA -5.76441167997744 LTS-011 chr3 157818194 157820501 2308 * SHOX2 NA 0 NA 1.145 1 NA NA NA NA NA LTS-011 chr3 157820502 158451882 631381 * c(MLF1, RSRC1, LXN, RARRES1, SHOX2, GFM1) 0.444505177735969 24 0.0486299245857671 1.29002421951028 492 0.609748937726911 4 2 2 -7.15544800555535 LTS-011 chr3 158451883 158522092 70210 * MFSD1 0 1 NA 1.83758350293395 25 0.911714569734776 7 7 0 -5.76441256222933 LTS-011 chr3 158522093 161062812 2540720 * c(MIR3919, IQCJ-SCHIP1, SMC4, PPM1L, SPTSSB, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, NMD3, IFT80, MFSD1, IQCJ, SCARNA7, ARL14, B3GALNT1) 0.340710955968154 6 0.244204559062002 1.27050497614851 1504 1.0082119847848 4 3 1 -6.73626413267827 LTS-011 chr3 161062813 164785283 3722471 * c(LOC101243545, OTOL1, SPTSSB, LINC01192, SI) 0.258756535494607 3 0.249543583367716 1.01661289645601 285 0.416874475789018 3 3 0 -6.77089056452798 LTS-011 chr3 164785284 167159721 2374438 * c(SLITRK3, SERPINI2, BCHE, SI, ZBBX) 0.496 1 NA 0.939136622040639 299 0.411071892857707 3 3 0 -5.82237918275384 LTS-011 chr3 167159722 167543422 383701 * c(PDCD10, WDR49, SERPINI1, SERPINI2) 0.344964352236793 7 0.163711564009621 1.03122435562152 278 0.676105192947059 4 3 1 -6.75446453177964 LTS-011 chr3 167543423 167726431 183009 * LINC01330 NA 0 NA 1.871 1 NA NA NA NA NA LTS-011 chr3 167726432 169511363 1784932 * c(LRRC34, MECOM, GOLIM4, MYNN, MIR551B, TERC, ACTRT3, EGFEM1P) 0.434430724045289 5 0.0407345062569807 1.45809845531774 432 0.730254770883921 6 3 3 -7.11222709492509 LTS-011 chr3 169511364 169511423 60 * LRRC34 NA 0 NA 0.798 1 NA NA NA NA NA LTS-011 chr3 169511424 183757149 14245726 * c(LOC100128164, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, KCNMB2, DNAJC19, TTC14, LRRC34, ECT2, HTR3D, RPL22L1, NLGN1, TNIK, MCF2L2, ATP11B, NAALADL2, GHSR, GPR160, LAMP3, KCNMB3, CCDC39, LRRIQ4, SAMD7, SOX2-OT, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, PIK3CA, PLD1, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, EIF5A2, MCCC1, MRPL47, NCEH1, SLC7A14, GNB4, ZMAT3, NA NA NA NA NA NA NA NA NA LTS-011 FNDC3B, SKIL, SLC2A2, SOX2, MIR569, SEC62, TBL1XR1, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTL6A, TNFSF10, USP13, KLHL6) 0.417333264328525 118 0.127531860965604 1.11054329940791 6898 0.58597581663014 3 2 1 -6.95366758567708 LTS-011 NA NA NA NA LTS-011 chr3 183757150 183770754 13605 * HTR3D NA 0 NA 0.67 1 NA NA NA NA NA LTS-011 chr3 183770755 183824815 54061 * c(HTR3C, HTR3E) 0.400924813569308 4 0.0332903890034346 0.711286807690519 123 0.399615932335015 2 1 1 -6.73778468537931 LTS-011 chr3 183824816 183853033 28218 * EIF2B5 NA 0 NA 1.796 1 NA NA NA NA NA LTS-011 chr3 183853034 184093385 240352 * c(MIR1224, ALG3, AP2M1, CLCN2, FAM131A, DVL3, EIF4G1, POLR2H, ABCF3, PSMD2, SNORD66, THPO, EIF2B5, VWA5B2, CAMK2N2, ECE2) 0.446854359980345 27 0.0381938376020168 1.32331111846019 1491 0.529817557781799 4 2 2 -7.45647362830587 LTS-011 chr3 184093386 185348266 1254881 * c(EHHADH, LIPH, EPHB3, VPS8, C3orf70, EHHADH-AS1, SENP2, MAGEF1, THPO, CHRD, TMEM41A, MAP3K13) 0.409364819793392 37 0.144932654962484 1.08186166859019 1426 0.504633144990357 3 2 1 -6.76612784683398 LTS-011 chr3 185348267 185764388 416122 * c(IGF2BP2, ETV5, NMRAL1P1, SENP2, TRA2B, IGF2BP2-AS1) 0.438323643889511 7 0.0494021399189491 1.52401299366869 327 0.528699157606003 6 3 3 -7.0403829617586 LTS-011 chr3 185764389 187420409 1656021 * c(LOC100131635, ADIPOQ-AS1, RPL39L, RTP1, CRYGS, DGKG, AHSG, EIF4A2, ETV5, LOC253573, FETUB, HRG, RTP2, KNG1, DNAJB11, TBCCD1, MASP1, RFC4, SNORA63, SNORD2, SNORA4, RTP4, ST6GAL1, SST, SNORA81, ADIPOQ) 0.379614309307598 33 0.169894870568403 1.07199663007401 1426 0.55145016346704 3 2 1 -6.74089532616932 LTS-011 chr3 187420410 187433323 12914 * LOC100131635 NA 0 NA 1.138 1 NA NA NA NA NA LTS-011 chr3 187433324 195515700 8082377 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, XXYLT1-AS2, CLDN16, LRRC15, FAM43A, TMEM207, CPN2, MB21D2, XXYLT1, CCDC50, PYDC2, MUC20, FGF12, ACAP2, UTS2B, GP5, TPRG1, HES1, LPP-AS2, OSTN, ATP13A5, APOD, IL1RAP, FLJ42393, LINC00884, LPP, MUC4, OPA1, PPP1R2, P3H2, LSG1, HRASLS, BCL6, GMNC, LOC647323, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, NA NA NA NA NA NA NA NA NA LTS-011 TP63, CLDN1, TMEM44) 0.423543403395584 135 0.0857975634301305 1.23694779818929 4113 0.663338315297128 4 2 2 -6.76996619324375 LTS-011 NA NA NA NA LTS-011 chr3 195515701 195517553 1853 * MUC4 0.476244617380375 5 0.022151749366585 0.943451287707949 41 0.6336827830328 0 0 0 -10.2330179042825 LTS-011 chr3 195517554 195539180 21627 * MUC4 0 1 NA 0.899880104416911 33 0.861380607592465 2 2 0 -5.76458892560566 LTS-011 chr3 195539181 195711016 171836 * c(TNK2, SDHAP1) 0.26014463288216 10 0.101452999517565 1.17524089471669 211 0.610396655391116 6 5 1 -6.77233279789239 LTS-011 chr3 195711017 195776976 65960 * c(SDHAP1, TFRC) 0.498 1 NA 1.06565317586578 25 0.357911883941658 3 3 0 -5.76498290205549 LTS-011 chr3 195776977 197769542 1992566 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.428368016726943 62 0.0924890491895631 1.06821547189142 2845 0.472509686700564 4 2 2 -6.88257803437063 LTS-011 chr3 197769543 197770512 970 * LMLN NA 0 NA 0.931821566193995 23 0.332801879365323 3 NA NA -5.76445373969517 LTS-011 chr4 53174 53360 187 * c(ZNF595, ZNF718) 0.148 1 NA 0.647343166423936 5 0.294071929976324 1 1 0 -5.76441577308465 LTS-011 chr4 53361 1360103 1306743 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, ZNF595, DGKQ, ZNF721, ZNF718, GAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, ZNF141, ABCA11P, MFSD7, TMEM175, CTBP1-AS2) 0.429262475140549 70 0.104851093269619 0.770484540535503 2073 0.336780001993455 2 1 1 -6.79247290885283 LTS-011 chr4 1360104 1670648 310545 * c(FAM53A, CRIPAK, UVSSA) 0.449979129986599 12 0.0473199138040661 0.538459723313176 268 0.252510804848995 0 0 0 -7.53431070019882 LTS-011 chr4 1670649 1694547 23899 * c(FAM53A, SLBP) NA 0 NA 1.32 1 NA NA NA NA NA LTS-011 chr4 1694548 2210236 515689 * c(MIR943, TACC3, FGFR3, NAT8L, POLN, LETM1, C4orf48, SCARNA22, WHSC1, NELFA, SLBP, TMEM129) 0.410060066878768 30 0.12256468618183 0.792522306404079 1317 0.397011426078805 2 1 1 -6.73671972953781 LTS-011 chr4 2210237 2214766 4530 * POLN NA 0 NA 2.163 1 NA NA NA NA NA LTS-011 chr4 2214767 2249211 34445 * c(MXD4, POLN, HAUS3) 0.432892493728922 3 0.0173877351409933 1.25524682988042 127 0.641488695657739 4 2 2 -8.17462603070934 LTS-011 chr4 2249212 5969274 3720063 * c(LOC100133461, STX18-AS1, MIR378D1, MIR4800, HTT-AS, LINC01587, MFSD10, MXD4, ADD1, EVC2, OTOP1, CRMP1, ADRA2C, ZBTB49, EVC, NSG1, DOK7, LINC00955, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, FAM86EP, CFAP99, LRPAP1, MSX1, STX18, CYTL1, STK32B, LYAR, ZFYVE28, RGS12, RNF4, SH3BP2, TNIP2, TMEM128, NOP14, FAM193A) 0.405789595769734 110 0.117845153981531 0.787300298705735 3575 0.42318938284728 2 1 1 -6.74670569099891 LTS-011 chr4 5969275 5975340 6066 * character(0) NA 0 NA 0.469 1 NA NA NA NA NA LTS-011 chr4 5975341 6623241 647901 * c(JAKMIP1, MAN2B2, LOC285484, PPP2R2C, WFS1) 0.417131148074648 4 0.0590592922409336 0.615082228995739 570 0.259272125842328 2 1 1 -7.19087234519198 LTS-011 chr4 6623242 6623306 65 * MAN2B2 NA 0 NA 0.679 1 NA NA NA NA NA LTS-011 chr4 6623307 7795602 1172296 * c(LOC100129931, MIR4274, MIR4798, MRFAP1L1, MAN2B2, CCDC96, BLOC1S4, TBC1D14, SORCS2, AFAP1, S100P, FLJ36777, PSAPL1, GRPEL1, AFAP1-AS1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.435131337298369 45 0.0745777202898853 0.827854094362754 1144 0.399690272130881 2 1 1 -6.84812137849652 LTS-011 chr4 7795603 7802212 6610 * AFAP1 NA 0 NA 1.981 1 NA NA NA NA NA LTS-011 chr4 7802213 7968899 166687 * c(AFAP1, ABLIM2) 0.448 1 NA 1.47206232014798 112 0.578397502179661 5 5 0 -5.7645987887959 LTS-011 chr4 7968900 7984985 16086 * ABLIM2 NA 0 NA 0.908 1 NA NA NA NA NA LTS-011 chr4 7984986 8868854 883869 * c(TRMT44, GPR78, HMX1, SH3TC1, ACOX3, ABLIM2, CPZ, HTRA3) 0.444282238065607 14 0.130331803950069 0.854534955411117 730 0.361130416908384 2 1 1 -6.80440187587273 LTS-011 chr4 8868855 9998551 1129697 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, DRD5, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30) 0.437165746388704 5 0.0385188265657198 0.581393920897593 149 0.219678681714248 2 1 1 -8.45819363780563 LTS-011 chr4 9998552 10118344 119793 * c(MIR3138, SLC2A9, WDR1) 0.420680025182431 8 0.0698926472732085 1.06484914526953 154 0.436976920593814 4 2 2 -6.78164920974318 LTS-011 chr4 10118345 10118377 33 * WDR1 0.436 1 NA 0.418 1 NA NA NA NA NA LTS-011 chr4 10118378 13373626 3255249 * c(CLNK, MIR572, ZNF518B, RAB28, WDR1, HS3ST1) 0.458145201258594 10 0.041341531445052 0.627844554606593 524 0.204239648520675 2 1 1 -9.81217642573279 LTS-011 chr4 13373627 13378065 4439 * RAB28 NA 0 NA 1.714 1 NA NA NA NA NA LTS-011 chr4 13378066 13606296 228231 * c(BOD1L1, LINC01097, LINC01096, NKX3-2, RAB28) 0.397352571761223 6 0.191834998544756 0.904895359603502 359 0.378036251026058 2 1 1 -6.74432103878559 LTS-011 chr4 13606297 15060961 1454665 * c(MIR5091, CPEB2, LINC01085, BOD1L1, CPEB2-AS1) 0.249622731329515 3 0.281746931364537 1.31135630878577 171 0.561883935463139 5 4 1 -6.7641226743222 LTS-011 chr4 15060962 15060968 7 * CPEB2 NA 0 NA 0.565 1 NA NA NA NA NA LTS-011 chr4 15060969 36317992 21257024 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, ARAP2, CPEB2, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FBXL5, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, DTHD1, MIR218-1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, NA NA NA NA NA NA NA NA NA LTS-011 SLIT2, CD38, FGFBP1) 0.412032548811132 81 0.127172751177189 0.828209385880686 5091 0.561650632611953 2 1 1 -6.74974605073604 LTS-011 NA NA NA NA LTS-011 chr4 36317993 37625098 1307106 * c(MIR4801, DTHD1, C4orf19, NWD2, RELL1) 0.360647633179734 8 0.1571631886198 0.595072066551695 298 0.384493828592478 1 1 0 -6.76312044546671 LTS-011 chr4 37625099 42113241 4488143 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, SLC30A9, PTTG2, LIAS, KLB, SMIM14, LIMCH1, TBC1D1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, BEND4, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, PGM2, CHRNA9, N4BP2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.41944977024982 95 0.107118788914036 0.792493050900675 3662 0.37095619235859 2 1 1 -6.7614361509121 LTS-011 chr4 42113242 42113256 15 * BEND4 NA 0 NA 0.618 1 NA NA NA NA NA LTS-011 chr4 42113257 42895423 782167 * c(ATP8A1, SHISA3, BEND4, GRXCR1) 0.335925491379322 19 0.186671428510692 0.717202100318773 559 0.371992571898787 1 1 0 -6.82945797717814 LTS-011 chr4 42895424 44176142 1280719 * c(KCTD8, GRXCR1) 0 1 NA 0.617013808915593 31 0.531758903247323 1 1 0 -5.76530174740226 LTS-011 chr4 44176143 44638143 462001 * c(YIPF7, KCTD8) NA 0 NA 0.557451561309301 85 0.185528073634269 1 NA NA -5.8199101722554 LTS-011 chr4 44638144 44652003 13860 * YIPF7 NA 0 NA 1.286 1 NA NA NA NA NA LTS-011 chr4 44652004 46926119 2274116 * c(GNPDA2, COX7B2, GABRA2, GABRA4, GABRG1, YIPF7, GUF1) 0.118994383289668 9 0.196277085887386 0.90713393346853 785 0.511928098276015 3 3 0 -6.89573106077373 LTS-011 chr4 46926120 46926777 658 * GABRA4 0.442 1 NA 1.09817865384779 15 0.380845075363423 3 3 0 -5.76442466751556 LTS-011 chr4 46926778 47428231 501454 * c(GABRA4, GABRB1) 0.331022034173943 8 0.148921779564211 0.855973385823237 208 0.309488373040401 2 1 1 -6.87581295779735 LTS-011 chr4 47428232 48850494 1422263 * c(CORIN, CNGA1, NFXL1, NIPAL1, SLC10A4, GABRB1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK) 0.324578878481022 38 0.0776649440078229 1.12537262534536 1593 0.531227268864951 4 3 1 -6.75753018986748 LTS-011 chr4 48850495 48851965 1471 * OCIAD1 NA 0 NA 0.563 1 NA NA NA NA NA LTS-011 chr4 48851966 49040187 188222 * c(OCIAD2, OCIAD1, CWH43) 0.228001071667737 3 0.193655191857418 0.844464425662541 141 0.694911900635894 2 2 0 -6.73832607379299 LTS-011 chr4 49040188 49064107 23920 * CWH43 NA 0 NA 0.7382183889811 19 0.2733137134593 2 NA NA -5.76621381711381 LTS-011 chr4 52709193 52888499 179307 * c(DCUN1D4, LRRC66, SGCB) 0.25 1 NA 1.165518069346 245 0.571241668848517 4 4 0 -5.76531305284645 LTS-011 chr4 52888500 57976260 5087761 * c(ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, IGFBP7-AS1, CHIC2, IGFBP7, KDR, KIT, RPL21P44, PDGFRA, POLR2B, PPAT, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, CLOCK, CEP135) 0.316685317411975 65 0.0991080703847301 1.17686661831565 3167 0.551492944726574 4 3 1 -6.75968270535386 LTS-011 chr4 57976261 68605267 10629007 * c(EPHA5-AS1, CENPC, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, IGFBP7, LOC401134, UBA6-AS1, UBA6) 0.379192806594477 11 0.0674691848853305 0.943223716433767 1045 0.421198396666613 3 2 1 -6.9496470030782 LTS-011 chr4 68605268 68904799 299532 * c(GNRHR, TMPRSS11A, UBA6-AS1, TMPRSS11GP, TMPRSS11D) 0.30047902476815 7 0.192840546023071 0.654277188952593 250 0.318105075817794 1 1 0 -6.75429694270904 LTS-011 chr4 68904800 68905279 480 * UBA6-AS1 NA 0 NA 0.317 1 NA NA NA NA NA LTS-011 chr4 68905280 68908120 2841 * UBA6-AS1 NA 0 NA 0.234827034704958 74 0.162937670218268 0 NA NA -5.78231441668237 LTS-011 chr4 68908121 68919216 11096 * c(TMPRSS11F, UBA6-AS1) 0 1 NA 0.607790364236206 9 0.872617613849274 1 1 0 -5.76441021615857 LTS-011 chr4 68919217 68995529 76313 * c(TMPRSS11F, SYT14P1, UBA6-AS1, LOC550113) 0.489 1 NA 0.546963008677755 64 0.29746467002102 1 1 0 -5.76983067156619 LTS-011 chr4 68995530 71115243 2119714 * c(FTLP10, CSN1S2BP, UGT2B11, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, FDCSP, SULT1B1, CSN1S2AP, HTN1, HTN3, TMPRSS11F, TMPRSS11BNL, PRR27, UGT2B28, ODAM, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17) 0.420220405044623 38 0.107425745965105 0.706547178013671 1160 0.415854585469474 2 1 1 -6.89186172196596 LTS-011 chr4 71115244 71201648 86405 * c(CSN3, CABS1) 0.199 1 NA 0.966861345281532 21 0.460883752516113 3 3 0 -5.76512776410998 LTS-011 chr4 71201649 71255939 54291 * c(SMR3B, SMR3A, CABS1) 0.241838252527741 5 0.0592579108642888 0.834042637345011 56 0.382382848539449 2 2 0 -6.73562263825629 LTS-011 chr4 71255940 71264926 8987 * c(SMR3B, OPRPN) NA 0 NA 1.41 1 NA NA NA NA NA LTS-011 chr4 71264927 71527942 263016 * c(ENAM, AMBN, JCHAIN, AMTN, MUC7, OPRPN) 0.21696580909015 15 0.108436946787391 1.15739071873913 368 0.919213818923483 3 3 0 -6.75821764570918 LTS-011 chr4 71527943 71531508 3566 * JCHAIN NA 0 NA 2.998 1 NA NA NA NA NA LTS-011 chr4 71531509 71896325 364817 * c(DCK, RUFY3, GRSF1, JCHAIN, UTP3, MOB1B) 0 2 0 1.72174137895584 539 0.813242782142109 0 0 0 -Inf LTS-011 chr4 71896326 72102211 205886 * c(DCK, SLC4A4) NA 0 NA 1.018 1 NA NA NA NA NA LTS-011 chr4 72102212 73149390 1047179 * c(NPFFR2, GC, SLC4A4, ADAMTS3) 0.172610813368654 6 0.134508611868039 1.11787568982647 334 0.587847141977567 4 4 0 -6.75208476185403 LTS-011 chr4 73149391 77324473 4175083 * c(FAM47E, FAM47E-STBD1, PPBPP2, THAP6, C4orf26, RASSF6, AFM, AFP, EREG, ALB, EPGN, PARM1, RCHY1, ANKRD17, NAAA, COX18, CXCL1, CXCL2, CXCL3, CCDC158, CXCL8, CXCL10, AREG, ART3, CXCL9, MTHFD2L, LOC441025, PF4, PF4V1, NUP54, PPEF2, PPBP, SDAD1, CXCL6, CXCL11, CXCL5, BTC, LOC728040, USO1, STBD1, CDKL2, SCARB2, ADAMTS3, G3BP2) 0.24661068555428 54 0.0688225444715116 1.50035367075181 3268 0.719563343034579 6 5 1 -6.77293796527704 LTS-011 chr4 77324474 77356247 31774 * CCDC158 NA 0 NA 3.566 1 NA NA NA NA NA LTS-011 chr4 77356248 78639219 1282972 * c(MIR4450, CXCL13, CCNI, CNOT6L, SOWAHB, SEPT11, SHROOM3, CCNG2) 0.201599522634245 15 0.109774357314491 1.71481966912854 876 0.768842055296257 7 6 1 -6.75839728280684 LTS-011 chr4 78639220 78639357 138 * CNOT6L NA 0 NA 0.92 1 NA NA NA NA NA LTS-011 chr4 78639358 78641771 2414 * CNOT6L NA 0 NA 0.851557118441212 60 0.461466074433546 2 NA NA -5.76442447007657 LTS-011 chr4 78641772 79838654 1196883 * c(LINC01094, PAQR3, CNOT6L, ANXA3, BMP2K, MRPL1, FRAS1) 0.187890889819569 25 0.119911383946646 1.66752946021437 995 0.799173026527947 8 7 1 -6.78698960274738 LTS-011 chr4 79838655 79860477 21823 * PAQR3 NA 0 NA 1.63782528374016 111 0.49426493358322 6 NA NA -5.76441065657406 LTS-011 chr4 79860478 80246288 385811 * c(LINC01088, PAQR3, NAA11) NA 0 NA 0.576 1 NA NA NA NA NA LTS-011 chr4 80246289 80329343 83055 * c(GK2, NAA11) 0.465 1 NA 0.559562844660951 57 0.11905512244524 1 1 0 -5.78661562322871 LTS-011 chr4 80329344 83276642 2947299 * c(LINC00989, PCAT4, ANTXR2, RASGEF1B, FGF5, C4orf22, GK2, HNRNPD, PRKG2, PRDM8, BMP3) 0.431616306496338 18 0.0509808371021307 0.705577019591268 909 0.319874604075755 2 1 1 -7.25473466675676 LTS-011 chr4 83276643 83277787 1145 * HNRNPD NA 0 NA 1.108 1 NA NA NA NA NA LTS-011 chr4 83277788 83352147 74360 * c(HNRNPD, ENOPH1, HNRNPDL) NA 0 NA 1.44596312518124 103 0.84583824131912 5 NA NA -5.7644133966859 LTS-011 chr4 83352148 83369067 16920 * ENOPH1 NA 0 NA 0.687 1 NA NA NA NA NA LTS-011 chr4 83369068 83582083 213016 * c(LINC00575, TMEM150C, ENOPH1, SCD5) 0.455158883785426 3 0.0596517672272443 0.624286569300564 151 0.185148853187495 2 1 1 -7.4199816820374 LTS-011 chr4 83582084 83846629 264546 * c(THAP9-AS1, LIN54, SEC31A, MIR575, THAP9, SCD5) 0 1 NA 0.806700439585889 337 0.454508914250744 2 2 0 -5.76446173966728 LTS-011 chr4 83846630 84526536 679907 * c(HPSE, HELQ, LIN54, COQ2, MRPS18C, COPS4, PLAC8, FAM175A, GPAT3) 0.236566970026806 9 0.220563356984891 0.8066350831372 701 0.418562915812642 2 2 0 -6.73420149966933 LTS-011 chr4 84526537 84526573 37 * GPAT3 0.496 1 NA 0.892471316415912 3 0.0441059330853949 2 2 0 -5.76450585087096 LTS-011 chr4 84526574 88414892 3888319 * c(LOC100506746, MIR4451, MIR5705, CDS1, C4orf36, WDFY3, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, NKX6-1, HSD17B11, NUDT9, MAPK10, KLHL8, PTPN13, ARHGAP24, SPARCL1, GPAT3) 0.423438160492088 31 0.0894806400638516 0.831678244259943 1926 0.406306874258745 2 1 1 -6.77317571262061 LTS-011 chr4 88414893 88414898 6 * SPARCL1 NA 0 NA 0.482 1 NA NA NA NA NA LTS-011 chr4 88414899 89192303 777405 * c(PPM1K, DMP1, DSPP, IBSP, PKD2, MEPE, SPP1, SPARCL1, ABCG2) 0.431455301543146 24 0.0483011199498086 0.650456560085737 673 0.286718761312707 2 1 1 -7.21404766925133 LTS-011 chr4 89192304 89198219 5916 * PPM1K NA 0 NA 0.946 1 NA NA NA NA NA LTS-011 chr4 89198220 99802052 10603833 * c(TSPAN5, PYURF, STPG2-AS1, FAM13A, PDLIM5, PPM1K, TIGD2, EIF4E, MMRN1, NAP1L5, HPGDS, FAM13A-AS1, GPRIN3, STPG2, GRID2, CCSER1, ATOH1, HERC5, PDHA2, HERC6, SMARCAD1, RAP1GDS1, SNCA-AS1, BMPR1B, SNCA, UNC5C, HERC3) 0.425669707275812 75 0.0984070091988343 0.84691895373833 3003 0.634137153306266 2 1 1 -6.79230841229961 LTS-011 chr4 99802053 99802260 208 * EIF4E NA 0 NA 1.885 1 NA NA NA NA NA LTS-011 chr4 99802261 99983643 181383 * c(MIR3684, EIF4E, METAP1) 0.406588058473906 4 0.060522723005496 1.25553127913139 174 0.512191502668958 4 2 2 -6.73616613996125 LTS-011 chr4 99983644 100463414 479771 * c(LOC100507053, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, METAP1, PCNAP1, C4orf17) 0.433914126388622 32 0.0857797019000679 0.655335505273671 620 0.297196927654694 2 1 1 -6.9614958288648 LTS-011 chr4 100463415 103720154 3256740 * c(LINC01216, DDIT4L, LOC256880, DAPP1, H2AFZ, MANBA, MTTP, NFKB1, EMCN, BANK1, PPP3CA, SLC39A8, UBE2D3, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.392180907280941 40 0.125303365211527 0.878541486462201 1543 0.48695575626528 2 1 1 -6.78559100734409 LTS-011 chr4 103720155 103720627 473 * UBE2D3 NA 0 NA 1.328 1 NA NA NA NA NA LTS-011 chr4 103720628 103790729 70102 * c(CISD2, UBE2D3) 0.489048889796289 2 0.00494974746830588 1.70633054473577 69 0.798582312692266 6 3 3 -19.1316402935723 LTS-011 chr4 103790730 103806169 15440 * CISD2 NA 0 NA 0.465 1 NA NA NA NA NA LTS-011 chr4 103806170 119399800 15593631 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, ENPEP, NPNT, PPA2, DKK2, RPL34-AS1, ANK2, HADH, CFI, LRIT3, MIR302B, CISD2, LEF1, LARP7, PITX2, GAR1, TET2, ARHGEF38, MCUB, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RPL34, NEUROG2, LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UGT8, ELOVL6, ARSJ, GSTCD, ALPK1, CXXC4, NA NA NA NA NA NA NA NA NA LTS-011 PLA2G12A, CAMK2D, CASP6, COL25A1, PRSS12, PAPSS1, AIMP1, TIFA, NDST3, TBCK) 0.413359941193151 137 0.107262610967029 0.825000843710763 6065 0.418027491227819 2 1 1 -6.75017206479444 LTS-011 NA NA NA NA LTS-011 chr4 119399801 119399899 99 * character(0) NA 0 NA 0.562 1 NA NA NA NA NA LTS-011 chr4 119399900 119477080 77181 * CEP170P1 0.207314094979847 5 0.236448725942856 0.425803846614222 167 0.404464355632575 2 2 0 -6.86501719294792 LTS-011 chr4 119477081 144616794 25139714 * c(SCOC-AS1, PP12613, MIR2054, LINC00499, SPRY1, PGRMC2, CLGN, PLK4, PRDM5, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, MGAT4D, SPATA5, BBS12, FREM3, SYNPO2, ELF2, FABP2, FGF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, LINC01091, ANXA5, IL2, IL15, LINC01061, C4orf3, MAD2L1, MGST2, GUSBP5, NDUFC1, MYOZ2, EXOSC9, PCDH18, USP53, LARP1B, BBS7, MAML3, ANKRD50, RNF150, PCDH10, NA NA NA NA NA NA NA NA NA LTS-011 METTL14, IL21, SCOC, SLC7A11-AS1, LINC00616, TNRC18P1, LOC645513, TRPC3, CETN4P, UCP1, NDNF, FAT4, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, PDE5A, INPP4B, CCNA2, SEC24D) 0.43603187677319 161 0.0856424456317591 0.82004315363384 8031 0.389317821510473 2 1 1 -6.83110317632046 LTS-011 NA NA NA NA LTS-011 chr4 144616795 144616805 11 * FREM3 NA 0 NA 0.591 1 NA NA NA NA NA LTS-011 chr4 144616806 145581416 964611 * c(FREM3, GYPA, GYPB, GYPE, HHIP, HHIP-AS1) 0.383162997818624 11 0.138489251305914 0.589615779553494 316 0.267480604116375 1 1 0 -6.83819130435206 LTS-011 chr4 145581417 145627661 46245 * HHIP NA 0 NA 0.971 1 NA NA NA NA NA LTS-011 chr4 145627662 152510130 6882469 * c(LINC01095, MIR4799, ANAPC10, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, PRSS48, SMAD1, NR3C2, POU4F2, OTUD4, TMEM184C, ABCE1, RPS3A, HHIP, C4orf51, FAM160A1, ARHGAP10, TTC29, SLC10A7, SNORD73A, PRMT9, LRBA) 0.415754410853496 25 0.136084838734274 0.832129502282103 2682 0.36945893508734 2 1 1 -6.7545826510052 LTS-011 chr4 152510131 152592101 81971 * c(GATB, FAM160A1) 0 1 NA 0.866789566858775 83 0.387231746132787 2 2 0 -5.76573858389609 LTS-011 chr4 152592102 153898934 1306833 * c(MIR3140, TIGD4, TMEM154, ARFIP1, GATB, DKFZP434I0714, FBXW7, FHDC1) 0.272197952804272 12 0.230387815334374 0.805365823197902 664 0.361982149752005 2 2 0 -6.74158039287078 LTS-011 chr4 153898935 153899658 724 * FHDC1 0.444 1 NA 0.755494223243864 18 0.437616135846179 2 2 0 -5.76442246362843 LTS-011 chr4 153899659 154624326 724668 * c(KIAA0922, TRIM2, ANXA2P1, TLR2, MND1, FHDC1) 0.412583004227432 15 0.119754192689303 0.800965351748214 525 0.320830000043111 2 1 1 -6.73839641205626 LTS-011 chr4 154624327 155457563 833237 * c(RNF175, PLRG1, DCHS2, SFRP2, TLR2) 0.398588833671143 20 0.168626650824895 0.667859965192953 501 0.29545730425009 1 1 0 -6.89475667048466 LTS-011 chr4 155457564 155457693 130 * PLRG1 NA 0 NA 1.209 1 NA NA NA NA NA LTS-011 chr4 155457694 155487843 30150 * c(FGB, PLRG1) NA 0 NA 1.12658902552095 108 0.475780797029924 4 NA NA -5.76500533744057 LTS-011 chr4 155487844 156138212 650369 * c(RBM46, FGA, FGB, FGG, NPY2R, LRAT) 0.33063876182697 4 0.22141138182126 0.616534222696538 444 0.353895591643983 1 1 0 -6.73418584449573 LTS-011 chr4 156138213 164245859 8107647 * c(MIR3688-1, MIR3688-2, CTSO, C4orf45, C4orf46, ETFDH, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY1R, NPY2R, FAM198B, ASIC5, PPID, TMEM144, PDGFC, FSTL5, FNIP2, RXFP1, TDO2, MAP9, NAF1, RAPGEF2) 0.397780830537743 40 0.131276276978881 0.838142421921929 2324 0.66364636680515 2 1 1 -6.74370876556776 LTS-011 chr4 164245860 164394549 148690 * c(NPY1R, NPY5R, TKTL2) 0.273755572924465 3 0.251250870645258 0.509974172864223 129 0.489267945585565 1 1 0 -6.77031613647149 LTS-011 chr4 164394550 164534160 139611 * c(MARCH1, TMA16, TKTL2) 0.465164731023196 15 0.0323363277945733 0.892548780497996 213 0.415909818685213 2 1 1 -8.42391706895953 LTS-011 chr4 164534161 165998327 1464167 * c(LINC01207, APELA, FAM218A, TRIM60, TMEM192, ANP32C, TRIM61, MARCH1) 0.380058932133587 7 0.0928326707679186 0.587642031004606 223 0.320971706830157 1 1 0 -6.9350735177469 LTS-011 chr4 165998328 169911432 3913105 * c(ANXA10, KLHL2, CPE, TMEM192, PALLD, GK3P, SPOCK3, DDX60, MSMO1, MIR578, TLL1, CBR4, DDX60L) 0.398887704319449 29 0.14486680650037 0.817738331013727 1429 0.445483154889563 2 1 1 -6.73371756853568 LTS-011 chr4 169911433 169922375 10943 * CBR4 NA 0 NA 2.436 1 NA NA NA NA NA LTS-011 chr4 169922376 170016045 93670 * c(SH3RF1, CBR4) 0.423623346177787 6 0.112938921546117 1.65940100160287 66 1.10594213830865 6 3 3 -6.75423855986742 LTS-011 chr4 170016046 174253201 4237156 * c(LOC100506085, LOC100506122, CLCN3, HMGB2, GALNTL6, NEK1, AADAT, GALNT7, HPF1, SH3RF1, MFAP3L) 0.424035603395261 18 0.113412429146753 0.825877632818335 999 0.406622168076876 2 1 1 -6.75847471685505 LTS-011 chr4 174253202 174253313 112 * HMGB2 NA 0 NA 1.609 1 NA NA NA NA NA LTS-011 chr4 174253314 174298546 45233 * c(HMGB2, SAP30) NA 0 NA 1.54974961901454 40 0.417192727399306 6 NA NA -5.76494182580351 LTS-011 chr4 174298547 183837927 9539381 * c(MIR1305, MIR4276, ADAM29, SCRG1, WDR17, SPATA4, ASB5, DCTD, AGA, FBXO8, GPM6A, LINC01098, HPGD, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, HAND2-AS1, GLRA3, CEP44, SAP30, LOC90768, HAND2) 0.42898651127744 33 0.0863397863798678 0.721373999197844 1832 0.476770834587083 2 1 1 -7.13182374316733 LTS-011 chr4 183837928 184431937 594010 * c(CLDN24, WWC2-AS2, DCTD, ING2, LOC389247, FAM92A1P2, CLDN22, CDKN2AIP, WWC2) 0.44869629023645 6 0.068174530923701 0.941387026190229 430 0.474181741259296 2 1 1 -7.03189128869681 LTS-011 chr4 184431938 184562498 130561 * c(RWDD4, ING2) 0.449 1 NA 0.399558815830299 41 0.181067245963967 0 0 0 -5.76442583231919 LTS-011 chr4 184562499 187130198 2567700 * c(MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, FAM149A, PDLIM3, CYP4V2, SLC25A4, ANKRD37, IRF2, HELT, C4orf47, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, FLJ38576, TLR3, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.431661300276441 65 0.0946448574327287 0.799808329828809 2150 0.433318485934138 2 1 1 -6.79232387330466 LTS-011 chr4 187130199 187130270 72 * CYP4V2 NA 0 NA 0.549 1 NA NA NA NA NA LTS-011 chr4 187130271 190981533 3851263 * c(ZFP42, TRIML2, F11, FAT1, FRG1, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A) 0.388537477268679 39 0.0975045173527029 0.606813056171855 949 0.276426583201185 1 1 0 -6.96736533627503 LTS-011 chr4 190981534 190981567 34 * character(0) NA 0 NA 1.157 1 NA NA NA NA NA LTS-011 chr5 140347 140532 186 * PLEKHG4B 0.373 1 NA 1.01344981413728 3 0.592485442859148 3 3 0 -5.7644101508973 LTS-011 chr5 140533 712144 571612 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.372924728608574 80 0.0771251972075521 0.942763955667001 1153 0.553303703090125 3 2 1 -6.74644525706717 LTS-011 chr5 712145 716871 4727 * character(0) NA 0 NA 1.814 1 NA NA NA NA NA LTS-011 chr5 716872 796376 79505 * ZDHHC11 0.307997531316684 14 0.0991841444258834 2.51071398021081 93 1.18413941751871 11 8 3 -6.73352081443245 LTS-011 chr5 796377 796446 70 * ZDHHC11 NA 0 NA 1.079 1 NA NA NA NA NA LTS-011 chr5 796447 1160520 364074 * c(LOC100506688, MIR4635, SLC12A7, BRD9, ZDHHC11, NKD2, TRIP13) 0.347249609669528 19 0.152942751969869 1.03701438683442 599 0.698149977638351 4 3 1 -6.7548705281736 LTS-011 chr5 1160521 5140915 3980395 * c(MIR4277, MIR4457, C5orf38, IRX2, ADAMTS16, LINC01019, SLC6A19, LINC01020, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, TERT, SDHAP3, LOC728613, IRX1, LPCAT1, CLPTM1L) 0.323129232247504 39 0.139332784481288 0.802081390723269 1095 0.512229355925366 2 2 0 -6.91491926071678 LTS-011 chr5 5140916 6757080 1616165 * c(PAPD7, UBE2QL1, ADAMTS16, ICE1, LINC01018, FLJ33360, NSUN2, SRD5A1, MED10) 0.367940803250174 6 0.0748191152046053 0.97010934053137 803 0.375650599283255 3 2 1 -6.76860670078973 LTS-011 chr5 6757081 7835687 1078607 * c(MIR4278, MIR4454, ADCY2, PAPD7, C5orf49, LOC442132) 0.41346077073638 11 0.0447908269829681 0.714224530018101 246 0.2480676438628 2 1 1 -6.94223213861888 LTS-011 chr5 7835688 7850953 15266 * C5orf49 NA 0 NA 1.858 1 NA NA NA NA NA LTS-011 chr5 7850954 11082762 3231809 * c(SNORD123, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4636, MARCH6, C5orf49, FAM173B, CMBL, CTNND2, DAP, CCT5, LOC285692, MTRR, TAS2R1, ANKRD33B, LOC729506, FASTKD3, ROPN1L, SEMA5A) 0.346662447629312 33 0.144383629874573 1.2313717321613 1153 0.871219704786009 4 3 1 -6.74257067752025 LTS-011 chr5 11082763 11082790 28 * CTNND2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-011 chr5 11082791 13944681 2861891 * c(CTNND2, DNAH5, LINC01194) 0.396596931063716 10 0.146249558403892 0.897854777841337 565 0.359816540621277 2 1 1 -6.86086213813502 LTS-011 chr5 13944682 14143929 199248 * TRIO NA 0 NA 2.334 1 NA NA NA NA NA LTS-011 chr5 14143930 14696532 552603 * c(FAM105A, TRIO, OTULIN) 0.334187464132379 14 0.181040946130493 1.28703824366616 634 0.558419247563395 4 3 1 -6.73596267658148 LTS-011 chr5 14696533 14741921 45389 * c(LOC100130744, ANKH, OTULIN) 0.447 1 NA 1.22582397173526 225 0.361867920908361 4 4 0 -5.76441087659926 LTS-011 chr5 14741922 19473290 4731369 * c(MIR4637, CDH18, BASP1, FBXL7, LOC285696, LOC401177, MARCH11, MYO10, FAM134B, ANKH, ZNF622) 0.442614320929487 13 0.0279206751810214 1.24264493273814 702 0.596283696228518 4 2 2 -7.7772977521984 LTS-011 chr5 19473291 19473297 7 * CDH18 NA 0 NA 0.836 1 NA NA NA NA NA LTS-011 chr5 19473298 31267754 11794457 * c(CDH6, CDH9, CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.433255550728641 4 0.060343461396686 0.808142257464727 494 0.38075546632413 2 1 1 -6.88838835824965 LTS-011 chr5 31267755 34020030 2752276 * c(CDH6, MIR4279, SUB1, C1QTNF3, PDZD2, AMACR, DROSHA, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, GOLPH3, TARS, ADAMTS12) 0.418729851006092 45 0.135172549660862 1.16776379260675 2148 0.580982012159918 4 2 2 -6.75422985100682 LTS-011 chr5 34020031 34020277 247 * C1QTNF3 0.376 1 NA 1.23920118914909 7 0.512418030610983 4 4 0 -5.76441017982963 LTS-011 chr5 34020278 34905654 885377 * c(C1QTNF3, TTC23L, RAI14, RAD1) 0.297989091007532 4 0.216176432573026 1.08994725415142 304 0.484660942783497 4 3 1 -6.77697987526217 LTS-011 chr5 34905655 34949857 44203 * c(DNAJC21, BRIX1, RAD1) 0 2 0 1.81654351316125 201 0.813223245985348 0 0 0 -Inf LTS-011 chr5 34949858 34950299 442 * DNAJC21 NA 0 NA 1.082 1 NA NA NA NA NA LTS-011 chr5 34950300 35641582 691283 * c(DNAJC21, PRLR, AGXT2, SPEF2) 0.168405548272151 3 0.258652920596952 0.950615689931894 469 0.445287622533433 3 3 0 -6.75045323877716 LTS-011 chr5 35641583 35643615 2033 * SPEF2 0.452 1 NA 1.63976049331123 7 0.474386872459499 6 6 0 -5.76441015503577 LTS-011 chr5 35643616 36105337 461722 * c(UGT3A1, CAPSL, UGT3A2, IL7R, SPEF2, LMBRD2) 0.444247171341335 28 0.0354237387897053 0.934299259832748 819 0.454597629975732 2 1 1 -7.49860953872348 LTS-011 chr5 36105338 36108566 3229 * LMBRD2 NA 0 NA 1.46 1 NA NA NA NA NA LTS-011 chr5 36108567 36686886 578320 * c(NADK2, RANBP3L, SKP2, SLC1A3, MIR580, LMBRD2) 0.467942571953567 2 0.00636396103067889 1.26949924101407 454 0.493572643464565 4 2 2 -16.0407477284884 LTS-011 chr5 36686887 37003501 316615 * c(NIPBL, NIPBL-AS1, SLC1A3) 0.316 1 NA 1.38844020311153 141 0.493562306353811 5 5 0 -5.76527798042329 LTS-011 chr5 37003502 38480271 1476770 * c(EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NIPBL, GDNF, LIFR, WDR70, C5orf42, NUP155) 0.251389593159194 11 0.246534415816166 1.1461974487838 1205 0.624914068392107 3 3 0 -6.7934469644717 LTS-011 chr5 38480272 38482043 1772 * LIFR 0.456 1 NA 0.931753109870229 37 0.30797985582111 3 3 0 -5.76450334297748 LTS-011 chr5 38482044 39202801 720758 * c(MIR3650, RICTOR, FYB, LIFR, OSMR) 0.406200388461746 8 0.161980543364231 1.2581006641986 728 0.708765023401584 4 2 2 -6.73386797494106 LTS-011 chr5 39202802 40767786 1564985 * c(DAB2, TTC33, FYB, PRKAA1, PTGER4, C9) 0.387366747399654 9 0.149631027679571 0.967224284643792 419 0.438709400366954 3 2 1 -6.74827884323041 LTS-011 chr5 40767787 40768495 709 * PRKAA1 NA 0 NA 4.837 1 NA NA NA NA NA LTS-011 chr5 40768496 40843469 74974 * c(LOC100506548, PRKAA1, RPL37, SNORD72, CARD6) 0.473663459952162 4 0.0158403493227475 1.49280000950282 224 0.753122514456253 6 3 3 -11.5937833795182 LTS-011 chr5 40843470 41853732 1010263 * c(MROH2B, PLCXD3, OXCT1, C6, C7, CARD6) 0.346802631601044 15 0.209788283298958 0.879781895140766 796 0.389646268793395 2 1 1 -6.79932729255982 LTS-011 chr5 41853733 41861350 7618 * OXCT1 NA 0 NA 1.326 1 NA NA NA NA NA LTS-011 chr5 41861351 42424817 563467 * c(FBXO4, GHR, C5orf51, OXCT1) 0.196011939707631 2 0.295570634535977 1.378368902448 223 0.743330535451867 4 4 0 -6.74860376534375 LTS-011 chr5 42424818 42467173 42356 * GHR NA 0 NA 0.555 1 NA NA NA NA NA LTS-011 chr5 42467174 42808518 341345 * c(CCDC152, GHR, SELENOP) 0.390071593278126 7 0.170792132081523 0.863765691543126 238 0.429672110684081 2 1 1 -6.74014277678906 LTS-011 chr5 42808519 42810828 2310 * SELENOP NA 0 NA 1.789 1 NA NA NA NA NA LTS-011 chr5 42810829 43139500 328672 * c(LOC100132356, LOC100506639, LOC153684, ANXA2R, SELENOP, LOC648987, ZNF131) NA 0 NA 2.08142424037955 91 1.25773131104924 8 NA NA -5.76442645158892 LTS-011 chr5 43139501 43161315 21815 * ZNF131 NA 0 NA 1.068 1 NA NA NA NA NA LTS-011 chr5 43161316 44808973 1647658 * c(NNT-AS1, PAIP1, NIM1K, FGF10, NNT, HMGCS1, C5orf34, CCL28, TMEM267, ZNF131) 0.451919986559467 5 0.0289015570514808 1.05890034667293 717 0.589182464710664 4 2 2 -8.1828598075431 LTS-011 chr5 44808974 45696278 887305 * c(MRPS30, HCN1) NA 0 NA 1.24772239601561 157 0.601938717599411 4 NA NA -5.76477773953928 LTS-011 chr5 49692017 49694583 2567 * EMB 0.399 1 NA 0.733187983860643 53 0.423826213974158 2 2 0 -5.76450238429796 LTS-011 chr5 49694584 52084365 2389782 * c(EMB, ISL1, ITGA1, PELO, LOC642366, PARP8) 0.354249824917639 14 0.0837516278339422 0.76328427887574 410 0.46761238853574 2 1 1 -6.95105424024482 LTS-011 chr5 52084366 52084380 15 * c(ITGA1, PELO) NA 0 NA 1.327 1 NA NA NA NA NA LTS-011 chr5 52084381 52099848 15468 * c(ITGA1, PELO) 0.35338434652085 6 0.0411667341429946 1.31921775777977 90 0.559820662384356 9 6 3 -6.74331398992927 LTS-011 chr5 52099849 52145154 45306 * ITGA1 NA 0 NA 1.031 1 NA NA NA NA NA LTS-011 chr5 52145155 54274951 2129797 * c(FST, ESM1, SNX18, LOC257396, ITGA1, ITGA2, MOCS2, NDUFS4, ARL15, MIR581, HSPB3) 0.266833471270541 16 0.104687391790989 0.804446606022532 881 0.439920578573544 2 2 0 -6.75834698140664 LTS-011 chr5 54274952 54275070 119 * ESM1 NA 0 NA 0.417 1 NA NA NA NA NA LTS-011 chr5 54275071 54462457 187387 * c(ESM1, CDC20B, GZMA, GZMK, GPX8) 0.282238704761108 9 0.116579372103301 0.621990798861049 251 0.21877327979484 1 1 0 -6.81952627877331 LTS-011 chr5 54462458 54952585 490128 * c(MIR449C, MIR5687, CCNO, SLC38A9, CDC20B, SKIV2L2, MCIDAS, RNF138P1, GPX8, DHX29, MIR449A, MIR449B, PLPP1) 0.281196756601413 5 0.0667809853176786 0.953409651958473 543 0.421309178988398 2 2 0 -6.9401328550108 LTS-011 chr5 54952586 55231009 278424 * c(IL31RA, SLC38A9, IL6ST, DDX4) 0.261910756798631 13 0.0504521860470196 0.59559373532997 292 0.244310424311944 2 2 0 -7.05500712595525 LTS-011 chr5 55231010 57792891 2561882 * c(PLK2, SETD9, MIER3, GAPT, ACTBL2, IL6ST, MAP3K1, FLJ31104, GPBP1, ANKRD55) 0.289269040834896 32 0.0524482848208134 0.84634280964163 1100 0.429530399901536 2 2 0 -7.13525149194089 LTS-011 chr5 57792892 57825931 33040 * character(0) NA 0 NA 0.551 1 NA NA NA NA NA LTS-011 chr5 57825932 58154076 328145 * RAB3C NA 0 NA 0.577401750351985 196 0.171667525387396 1 NA NA -5.77991618646972 LTS-011 chr5 58154077 68740198 10586122 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, ERCC8, SREK1, MARVELD2, CCDC125, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, TAF9, ELOVL7, TRAPPC13, CCNB1, NDUFAF2, MRPS36) 0.247271130061926 78 0.0945156290208351 0.848577632113672 4652 0.431966443098086 2 2 0 -6.79383022275848 LTS-011 chr5 68740199 68799972 59774 * OCLN NA 0 NA 0.508 1 NA NA NA NA NA LTS-011 chr5 68799973 69373234 573262 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) 0.232 1 NA 0.524820156858579 107 0.384048235358065 1 1 0 -5.81219704774058 LTS-011 chr5 69373235 70265493 892259 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.19846370476476 43 0.510220367998246 0 NA NA -6.62716346342983 LTS-011 chr5 70265494 70307096 41603 * c(GUSBP9, NAIP) NA 0 NA 0.414 1 NA NA NA NA NA LTS-011 chr5 70307097 78808879 8501783 * c(GUSBP9, NCRUPAR, MIR4804, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, JMY, TMEM171, TMEM174, POC5, CRHBP, ZNF366, S100Z, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, BHMT2, ANKRD31, FAM169A, GTF2H2, DMGDH, HEXB, HMGCR, TNPO1, ARSB, MAP1B, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, BHMT, MCCC2, ARHGEF28, LOC647859, SNORA47, BTF3, TBCA, ZBED3-AS1, ANKDD1B, PTCD2, UTP15, ZBED3, GFM2, NA NA NA NA NA NA NA NA NA LTS-011 ENC1, AP3B1, PDE8B, HOMER1, SCAMP1, CARTPT) 0.26231138697858 127 0.0956648167058066 0.785557848516261 5552 0.499780394561494 2 2 0 -6.77578925927315 LTS-011 NA NA NA NA LTS-011 chr5 78808880 78985964 177085 * c(PAPD4, CMYA5, HOMER1) NA 0 NA 1.13261796867053 125 0.476827425331626 4 NA NA -5.76747236780238 LTS-011 chr5 78985965 79024716 38752 * CMYA5 NA 0 NA 0.643 1 NA NA NA NA NA LTS-011 chr5 79024717 79086886 62170 * CMYA5 0.295496374897315 2 0.199404112294606 0.572316271067842 259 0.13412556283873 1 1 0 -6.75415705966237 LTS-011 chr5 79086887 79089188 2302 * CMYA5 NA 0 NA 1.224 1 NA NA NA NA NA LTS-011 chr5 79089189 85592395 6503207 * c(CKMT2-AS1, MTRNR2L2, MIR3977, EDIL3, CKMT2, ACOT12, HAPLN1, VCAN, TMEM167A, FAM151B, DHFR, CMYA5, SSBP2, SERINC5, RNU5E-1, NBPF22P, ANKRD34B, MTX3, CRSP8P, MSH3, RASGRF2, RPS23, LOC644936, SCARNA18, THBS4, XRCC4, ATG10, ZCCHC9, SPZ1, ATP6AP1L, ZFYVE16) 0.237673359850064 57 0.0990108503965126 0.777377008912089 2515 0.482432672464957 2 2 0 -6.77099039146982 LTS-011 chr5 85592396 85913638 321243 * NBPF22P NA 0 NA 1.918 1 NA NA NA NA NA LTS-011 chr5 85913639 89807841 3894203 * c(MIR4280, MIR3607, MIR3660, TMEM161B-AS1, POLR3G, CETN3, COX7C, MBLAC2, TMEM161B, MIR9-2, MEF2C, RASA1, LINC00461, CCNH) 0.263295635840031 10 0.0897797304518119 0.925286034965908 880 0.482897455414668 2 2 0 -6.91833874551954 LTS-011 chr5 89807842 90665045 857204 * c(POLR3G, LYSMD3, ARRDC3, ADGRV1) 0 2 0 0.687245543920922 764 0.304556545676474 0 0 0 -Inf LTS-011 chr5 90665046 92920508 2255463 * c(ARRDC3-AS1, NR2F1-AS1, ARRDC3, NR2F1) 0.243 1 NA 1.41699161784017 114 0.794414676447739 5 5 0 -5.76477289886663 LTS-011 chr5 92920509 92920682 174 * NR2F1 NA 0 NA 0.581 1 NA NA NA NA NA LTS-011 chr5 92920683 96367956 3447274 * c(MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.27767156714157 67 0.0922338188549616 0.804906881841535 2593 0.351397540582326 2 2 0 -6.80640998131266 LTS-011 chr5 96367957 100238946 3870990 * c(LOC100133050, LOC100289230, CHD1, LIX1, RGMB, FAM174A, RGMB-AS1, RIOK2, ST8SIA4) 0.275545384321018 27 0.0889812874466846 0.98376057308191 808 0.466267050172835 2 2 0 -7.16376401978561 LTS-011 chr5 101569657 101572704 3048 * SLCO4C1 0.295678853315119 3 0.0372424488990722 0.413441635473217 64 0.225510680927316 8 6 2 -6.82632279915886 LTS-011 chr5 101572705 101574936 2232 * SLCO4C1 NA 0 NA 1.012 1 NA NA NA NA NA LTS-011 chr5 101574937 111494227 9919291 * c(LOC100289673, STARD4-AS1, LINC01023, NREP-AS1, SLCO6A1, STARD4, WDR36, EFNA5, FER, PPIP5K2, SLCO4C1, MAN2A1, PAM, GIN1, EPB41L4A, TMEM232, FBXL17, CAMK4, NUDT12, TSLP, C5orf30, SLC25A46, NREP, RAB9BP1, PJA2) 0.23935616612794 66 0.114527045085185 0.835839735686798 2653 0.41050237385371 2 2 0 -6.76101514383669 LTS-011 chr5 111494228 111496499 2272 * c(EPB41L4A-AS1, EPB41L4A) NA 0 NA 1.462 1 NA NA NA NA NA LTS-011 chr5 111496500 111530284 33785 * c(EPB41L4A-AS1, EPB41L4A, SNORA13) 0.240250770231441 8 0.0488582132297119 1.08393834476531 98 0.354151276217459 2 2 0 -6.75358874341407 LTS-011 chr5 111530285 111545670 15386 * EPB41L4A 0.495 1 NA 1.06876655334108 21 0.61394200904987 3 3 0 -5.76446190440425 LTS-011 chr5 111545671 118877583 7331913 * c(TMED7-TICAM2, CDO1, AP3S1, CCDC112, DMXL1, DCP2, LVRN, TNFAIP8, DTWD2, APC, HSD17B4, TICAM2, KCNN2, MCC, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, TRIM36, FEM1C, SEMA6A, EPB41L4A, ARL14EPL, YTHDC2, SRP19, LINC00992, REEP5, TSSK1B, ATG12) 0.444481955182615 45 0.0803782535040644 1.22313547474788 3203 0.629695777654729 4 2 2 -6.89366587801067 LTS-011 chr5 118877584 118969594 92011 * c(HSD17B4, FAM170A) 0.433 1 NA 0.8806059201162 25 0.25084119810483 2 2 0 -5.76994506958786 LTS-011 chr5 118969595 120021817 1052223 * c(FAM170A, PRR16) 0.34 1 NA 0.818676213856244 45 0.374145285884367 2 2 0 -5.76460308603776 LTS-011 chr5 120021818 131720021 11698204 * c(KIAA1024L, MIR3936, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSF2, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, ACSL6, SLC27A6, SNX24, HINT1, CHSY3, IL3, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, RAPGEF6, PHAX, PPIC, LOC553103, CDC42SE2, ZNF608, CTXN3, LINC01184, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, MEIKIN, MEGF10, PDLIM4, P4HA2, LYRM7, PRDM6, FTMT, SNCAIP, FNIP1) 0.250994384718118 51 0.0802828235969929 0.836328934531013 4542 0.399622938221526 2 2 0 -6.76966610125552 LTS-011 chr5 131720022 131721039 1018 * SLC22A5 NA 0 NA 1.105 1 NA NA NA NA NA LTS-011 chr5 131721040 131825223 104184 * c(IRF1, C5orf56, SLC22A5) 0.303454110585537 10 0.0606230612519325 1.18477791385893 229 0.329974922436404 5 4 1 -6.81989927981509 LTS-011 chr5 131825224 131877114 51891 * IRF1 NA 0 NA 0.615 1 NA NA NA NA NA LTS-011 chr5 131877115 135551997 3674883 * c(VTRNA2-1, MIR1289-2, MIR3661, MIR4461, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, SLC25A48, FSTL4, SEPT8, JADE2, FBXL21, GDF9, UQCRQ, AFF4, HSPA4, C5orf66-AS2, LOC340074, CATSPER3, IL4, IL5, IL9, IL13, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, SAR1B, CDKL3, PITX1, ZCCHC10, PPP2CA, C5orf15, TRPC7, CCNI2, SKP1, TCF7, TGFBI, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-011 CXCL14, H2AFY, SMAD5-AS1, DDX46) 0.227847848238557 62 0.111086685604835 0.776015200696284 4030 0.51432914943368 2 2 0 -6.76669720808974 LTS-011 NA NA NA NA LTS-011 chr5 135551998 135560896 8899 * TRPC7 NA 0 NA 0.428 1 NA NA NA NA NA LTS-011 chr5 135560897 136320928 760032 * c(TRPC7, SPOCK1) 0.277849342040734 3 0.043189504897988 0.566903034412247 170 0.195969786859207 1 1 0 -7.46124438630689 LTS-011 chr5 136320929 136324118 3190 * SPOCK1 NA 0 NA 1.176 1 NA NA NA NA NA LTS-011 chr5 136324119 140166320 3842202 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SPOCK1, SNHG4, NA NA NA NA NA NA NA NA NA LTS-011 UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.257596591911467 50 0.0934559352675618 0.850257224774387 4532 0.617047001620833 2 2 0 -6.75476303992529 LTS-011 NA NA NA NA LTS-011 chr5 140166321 140553623 387303 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.220570956171463 15 0.0891655496147208 0.615268804088418 1144 0.29867901812897 2 2 0 -6.97636941424533 LTS-011 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.383 1 NA NA NA NA NA LTS-011 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0 1 NA 0.286338628673842 66 0.349381603544183 0 0 0 -5.76666862888311 LTS-011 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.564 1 NA NA NA NA NA LTS-011 chr5 140559822 140811881 252060 * c(PCDHGA12, PCDHB18P, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.212734284571996 15 0.103700438535143 0.643482552483794 1431 0.312094153021938 2 2 0 -6.87681209526784 LTS-011 chr5 140811882 142779912 1968031 * c(GNPDA1, LOC100505658, ARHGAP26-AS1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, ARAP3, LOC729080, NDFIP1, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.272212452007502 34 0.0808004959304242 0.87824297268012 2192 0.370330939557836 2 2 0 -6.84761681046075 LTS-011 chr5 142779913 148680022 5900110 * c(MIR5197, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, AFAP1L1, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DPYSL3, STK32A, ABLIM3, NR3C1, HTR4, C5orf46, SPINK6, SPINK14, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, HMHB1, GRXCR2, SPINK9, SPINK1, SH3TC2, FBXO38, YIPF5, SPINK7, JAKMIP2) 0.252119982695148 49 0.112834777771882 0.757983865190996 2731 0.356097512320153 2 2 0 -6.87060420301297 LTS-011 chr5 148680023 148680619 597 * AFAP1L1 NA 0 NA 1.198 1 NA NA NA NA NA LTS-011 chr5 148680620 149214350 533731 * c(PPARGC1B, AFAP1L1, GRPEL2, CSNK1A1, IL17B, ARHGEF37, MIR143, CARMN, PCYOX1L) 0.271690875351121 12 0.0543780258649548 1.0353769724812 677 0.591047282527324 5 4 1 -6.85643936883593 LTS-011 chr5 149214351 149214774 424 * PPARGC1B NA 0 NA 0.77 1 NA NA NA NA NA LTS-011 chr5 149214775 154393656 5178882 * c(MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, SYNPO, PPARGC1B, ZNF300P1, CSF1R, SLC36A2, SLC26A2, SLC36A1, FAT2, HMGXB3, LARP1, GEMIN5, CCDC69, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, ARSI, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, PDE6A, PDGFRB, GALNT10, RBM22, NMUR2, RPS14, SLC6A7, SPARC, TCOF1, SAP30L, CAMK2A, TIGD6, SMIM3, ZNF300, MYOZ3, CNOT8, HAND1, CD74 NA NA NA NA NA NA NA NA NA LTS-011 ) 0.23754406570811 134 0.101557591239937 0.817261791381009 5848 0.392076109391622 2 2 0 -6.73729631044827 LTS-011 NA NA NA NA LTS-011 chr5 154393657 154393787 131 * KIF4B NA 0 NA 0.371 1 NA NA NA NA NA LTS-011 chr5 154393788 156590359 2196572 * c(PPP1R2P3, FAM71B, HAVCR1, KIF4B, SGCD, HAVCR2, TIMD4, MED7) 0.22276831954904 14 0.135654882893124 0.590049964897483 590 0.307093854740076 1 1 0 -7.07407438563707 LTS-011 chr5 156590360 159901620 3311261 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, FAM71B, RNF145, EBF1, FABP6, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, ITK, FNDC9, THG1L, ZBED8, TTC1, CCNJL, ADAM19, PTTG1, CLINT1) 0.259553395795252 50 0.112845829451025 0.832105786986142 2199 0.429723228453326 2 2 0 -6.74774705112014 LTS-011 chr5 159901621 159912336 10716 * character(0) NA 0 NA 0.608 1 NA NA NA NA NA LTS-011 chr5 159912337 161582208 1669872 * c(ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, LOC285629, MIR146A) 0.182894026471297 20 0.128029797107425 0.638231555216724 713 0.357980453849453 2 2 0 -7.30132427899269 LTS-011 chr5 161582209 168201328 6619120 * c(MIR103B1, NUDCD2, WWC1, GABRG2, MAT2B, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.272890364834675 14 0.0961124856098826 0.817238389901397 1280 0.404615651120082 2 2 0 -6.7814773263759 LTS-011 chr5 168201329 170813760 2612432 * c(FAM196B, MIR3912, MIR378E, C5orf58, DOCK2, FOXI1, GABRP, LINC01366, TLX3, KCNIP1, KCNMB1, LCP2, SPDL1, RANBP17, SLIT3, MIR585) 0.266997861303793 30 0.116440819164999 0.686654700053783 1236 0.350115862539663 1 1 0 -7.07885120748163 LTS-011 chr5 170813761 173040318 2226558 * c(LOC100268168, MIR3912, NKX2-5, CREBRF, DUSP1, FBXW11, EFCAB9, SH3PXD2B, LOC285593, NPM1, RPL26L1, NEURL1B, ERGIC1, BNIP1, SNORA74B, STK10, STC2, FGF18, ATP6V0E1, BOD1, UBTD2) 0.264706488322567 24 0.115514656514077 0.87315773167149 1682 0.437293813063462 2 2 0 -6.7843344908051 LTS-011 chr5 173040319 173043116 2798 * BOD1 NA 0 NA 1.539 1 NA NA NA NA NA LTS-011 chr5 173043117 173316431 273315 * c(CPEB4, BOD1) NA 0 NA 2.18528380554974 44 0.954766903966141 9 NA NA -5.76464190584206 LTS-011 chr5 173316432 173416460 100029 * c(C5orf47, CPEB4) NA 0 NA 1.0961686229744 210 0.742769440085913 3 NA NA -5.76496299956491 LTS-011 chr5 173416461 175386681 1970221 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.193727638896064 14 0.100445299749457 0.618964683733245 515 0.292800449594665 1 1 0 -7.63720232974598 LTS-011 chr5 175386682 175723359 336678 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) NA 0 NA 0.467563973531399 190 0.843039388957533 0 NA NA -5.77165387797135 LTS-011 chr5 175723360 175740061 16702 * SIMC1 NA 0 NA 0.666 1 NA NA NA NA NA LTS-011 chr5 175740062 176696744 956683 * c(MIR4281, GPRIN1, CLTB, HIGD2A, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, ARL10, HK3, SIMC1, NOP16, UIMC1, CDHR2, KIAA1191, NSD1, SNCB, UNC5A) 0.220206522541048 38 0.0938298602485009 0.725074527954618 1775 0.41098057447373 2 2 0 -6.82126276873252 LTS-011 chr5 176696745 176696748 4 * NSD1 NA 0 NA 0.934 1 NA NA NA NA NA LTS-011 chr5 176696749 177037367 340619 * c(RGS14, LMAN2, B4GALT7, DBN1, F12, PRELID1, GRK6, PRR7-AS1, PFN3, DDX41, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.275063445981781 14 0.0511462565633064 0.950004684277162 1357 0.391411172235262 2 2 0 -6.95747338241773 LTS-011 chr5 177037368 177053401 16034 * LOC202181 NA 0 NA 0.27 1 NA NA NA NA NA LTS-011 chr5 177053402 177474006 420605 * c(LOC202181, FAM153A, PROP1, FAM153C, LOC728554) 0.253605791114596 4 0.177381650685746 0.447801634817659 244 0.293055321552521 1 1 0 -7.08981219708734 LTS-011 chr5 177474007 177474154 148 * FAM153C NA 0 NA 0.77 1 NA NA NA NA NA LTS-011 chr5 177474155 178153273 679119 * c(N4BP3, HNRNPAB, NHP2, CLK4, GMCL1P1, RMND5B, FAM153C, ZNF354A, PHYKPL, COL23A1) 0.107206464646804 10 0.105449777408753 0.86532834508074 744 0.507073279558342 4 4 0 -7.08521007074867 LTS-011 chr5 178153274 178154048 775 * ZNF354A NA 0 NA 0.649 1 NA NA NA NA NA LTS-011 chr5 178154049 178952062 798014 * c(ZNF354B, ZNF454, GRM6, ZNF354C, ZNF879, ZNF354A, AACSP1, ZFP2, ADAMTS2) 0.236121023607912 31 0.070738272708672 0.655569270846488 774 0.323991683755722 2 2 0 -6.94879611119177 LTS-011 chr5 178952063 178977549 25487 * character(0) NA 0 NA 0.963 1 NA NA NA NA NA LTS-011 chr5 178977550 180005404 1027855 * c(MIR1229, MGAT4B, TBC1D9B, RASGEF1C, C5orf60, HNRNPH1, LTC4S, MIR340, C5orf45, RNF130, MAPK9, CNOT6, CBY3, RUFY1, CANX, SQSTM1, MAML1, GFPT2) 0.246048408471237 51 0.0997344513411175 0.81582553564297 1705 0.431606313594783 2 2 0 -6.73307127288938 LTS-011 chr5 180005405 180017069 11665 * character(0) NA 0 NA 0.496 1 NA NA NA NA NA LTS-011 chr5 180017070 180488260 471191 * c(HEIH, BTNL3, OR2Y1, BTNL9, FLT4, MGAT1, ZFP62, LINC00847, BTNL8, SCGB3A1) 0.235652751210237 14 0.0412867219162942 0.649812047598974 648 0.297599438955539 2 2 0 -6.92451828618261 LTS-011 chr5 180488261 180582986 94726 * c(BTNL9, OR2V1, OR2V2) NA 0 NA 0.484119364283146 47 0.0904449633581371 0 NA NA -6.01644806502008 LTS-011 chr5 180582987 180620933 37947 * TRIM7 NA 0 NA 1.053 1 NA NA NA NA NA LTS-011 chr5 180620934 180688111 67178 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.907338577581684 347 0.434888734897331 2 NA NA -5.76695820525288 LTS-011 chr6 203389 335251 131863 * DUSP22 0.275 1 NA 1.10231626712371 33 0.50159295114302 3 3 0 -5.76626847127798 LTS-011 chr6 335252 489001 153750 * c(IRF4, EXOC2, DUSP22) 0.226340901456843 9 0.139321371097346 1.05740804075651 275 0.741562725756171 2 2 0 -6.75603632342408 LTS-011 chr6 489002 9809933 9320932 * c(SCARNA27, MIR3691, LOC100506207, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SLC35B3, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, NA NA NA NA NA NA NA NA NA LTS-011 BMP6, BPHL, SSR1, TUBB2A, HULC, TXNDC5, RIOK1, RIPK1, PRPF4B, FOXQ1, CDYL, LY86, EEF1E1) 0.152383265668924 101 0.0545541805351468 1.37182362354875 4002 0.676006359435316 5 5 0 -6.7907924958853 LTS-011 NA NA NA NA LTS-011 chr6 9809934 10393871 583938 * character(0) 0.0863417101963668 2 0.101823376490863 0.91904701875103 85 0.797049623449441 6 6 0 -6.98661526553651 LTS-011 chr6 10393872 10396974 3103 * TFAP2A NA 0 NA 2.3 1 NA NA NA NA NA LTS-011 chr6 10396975 10529535 132561 * c(TFAP2A-AS1, MIR5689, LINC00518, GCNT2, TFAP2A) 0.126595461910628 2 0.0205060966544099 1.89726108541245 168 1.14177139025873 14 13 1 -6.76168234214975 LTS-011 chr6 10529536 11005781 476246 * c(SYCP2L, GCNT2, C6orf52, MAK, TMEM14C, ELOVL2, PAK1IP1, TMEM14B, GCM2) 0.115344423287145 9 0.0758953958492286 1.13345748270668 744 0.567215532163093 5 5 0 -6.84298995343279 LTS-011 chr6 11005782 11010884 5103 * ELOVL2 NA 0 NA 1.275 1 NA NA NA NA NA LTS-011 chr6 11010885 21231545 10220661 * c(TMEM170B, LOC100130357, RANBP9, ELOVL2-AS1, MIR4639, CAP2, MBOAT1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SIRT5, RNF144B, GMPR, MYLIP, HIVEP1, ID4, JARID2, NHLRC1, STMND1, ERVFRD-1, NEDD9, TBC1D7, NOL7, FAM8A1, GFOD1, ELOVL2, CDKAL1, ATXN1, MCUR1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, ADTRP, CD83, NUP153) 0.156381834199994 92 0.0623242871614777 1.42701461276001 4169 0.706713380573011 5 5 0 -6.77653239669012 LTS-011 chr6 21231546 22147479 915934 * c(CASC15, CDKAL1, SOX4, NBAT1) 0.126518339166876 2 0.0028284271247462 2.47692992478094 129 1.30658025956505 14 13 1 -7.21769383507171 LTS-011 chr6 22147480 22287357 139878 * CASC15 NA 0 NA 1.335 1 NA NA NA NA NA LTS-011 chr6 22287358 24416713 2129356 * c(NRSN1, HDGFL1, KAAG1, DCDC2, PRL, MRS2) 0.183753579205309 12 0.124392219380572 0.876551237326442 314 0.477524956120913 3 3 0 -6.86609009297095 LTS-011 chr6 24416714 24429251 12538 * c(GPLD1, MRS2) 0.326 1 NA 1.02766821016997 100 2.49150438016144 3 3 0 -5.76441019009828 LTS-011 chr6 24429252 24719081 289830 * c(GPLD1, TDP2, ACOT13, ALDH5A1, C6orf62, KIAA0319) 0.22414303806545 13 0.0949293259381785 0.963508238906476 599 0.385551336015497 3 3 0 -6.78901636310967 LTS-011 chr6 24719082 24777182 58101 * c(GMNN, C6orf62) NA 0 NA 1.91935783745525 49 0.765166846329014 7 NA NA -5.76448997148739 LTS-011 chr6 24777183 24777229 47 * GMNN NA 0 NA 0.692 1 NA NA NA NA NA LTS-011 chr6 24777230 25082189 304960 * c(GMNN, CMAHP, FAM65B) 0.234572756440311 8 0.105795962655886 0.851155116858279 273 0.565874937169219 2 2 0 -6.74075338981212 LTS-011 chr6 25082190 25084694 2505 * CMAHP NA 0 NA 1.136 1 NA NA NA NA NA LTS-011 chr6 25084695 25652832 568138 * c(SCGN, CARMIL1, CMAHP) 0.145255564690468 4 0.112173600578151 1.1375859006691 295 0.449655634227313 4 4 0 -6.75802398978735 LTS-011 chr6 25652833 25653598 766 * SCGN NA 0 NA 0.581 1 NA NA NA NA NA LTS-011 chr6 25653599 25967068 313470 * c(SLC17A4, SLC17A2, TRIM38, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) 0.228522036277773 19 0.0644666829949724 0.73282940656778 390 0.355797557715521 2 2 0 -6.79107582017743 LTS-011 chr6 25967069 25967091 23 * TRIM38 NA 0 NA 1.217 1 NA NA NA NA NA LTS-011 chr6 25967092 26365619 398528 * c(TRIM38, BTN3A2, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.259622840014233 19 0.0464118985550621 1.64215136698919 633 0.733530052252627 6 5 1 -6.7696060021888 LTS-011 chr6 26365620 26368317 2698 * BTN3A2 NA 0 NA 0.846 1 NA NA NA NA NA LTS-011 chr6 26368318 26545632 177315 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, HCG11, BTN2A3P, BTN1A1) 0.141272551479766 2 0.145663996924429 0.894998797877506 544 0.398026165370641 4 4 0 -6.81295304018589 LTS-011 chr6 26545633 26600330 54698 * c(HMGN4, ABT1) NA 0 NA 1.50054365700309 87 0.689478524824038 5 NA NA -5.76454551775492 LTS-011 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.012 1 NA NA NA NA NA LTS-011 chr6 26636496 26638886 2391 * ZNF322 NA 0 NA 0.314641167209605 54 0.177312282013684 0 NA NA -5.76695727784376 LTS-011 chr6 26638887 27215512 576626 * c(LINC00240, LOC100270746, MIR3143, PRSS16, GUSBP2, ZNF322, HIST1H4I, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ) NA 0 NA 1.84079120893544 102 0.529356650661254 7 NA NA -5.76444322485986 LTS-011 chr6 27215513 27425160 209648 * c(PRSS16, ZNF391, VN1R10P, ZNF184, ZNF204P, POM121L2) 0.233610893898458 7 0.0339011167114848 0.821996824350437 349 0.382426205308083 2 2 0 -6.80757780401746 LTS-011 chr6 27425161 27425185 25 * ZNF184 0.192 1 NA 1.776 1 NA NA NA NA NA LTS-011 chr6 27425186 27861721 436536 * c(LOC100131289, LINC01012, HIST1H1B, ZNF184, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L) 0.246467982380192 4 0.0272564976962681 1.43380590199463 251 0.550007205516002 6 5 1 -6.75126497962793 LTS-011 chr6 27861722 27878947 17226 * character(0) NA 0 NA 0.611 1 NA NA NA NA NA LTS-011 chr6 27878948 28402073 523126 * c(ZSCAN16-AS1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, OR2B6, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, OR2B2, PGBD1, ZSCAN12) 0.275 1 NA 0.886359608538167 861 0.368944811400693 2 2 0 -5.78140618451029 LTS-011 chr6 28402074 28554155 152082 * c(ZSCAN23, GPX6) 0.174 1 NA 0.64953666517954 224 0.230751480853492 1 1 0 -5.77267226031905 LTS-011 chr6 28554156 28554207 52 * character(0) NA 0 NA 0.999 1 NA NA NA NA NA LTS-011 chr6 28554208 28962569 408362 * character(0) 0.262361798667877 6 0.0475128052914861 1.25930759043 134 0.488210733369627 6 5 1 -6.85822436721389 LTS-011 chr6 28962570 29691097 728528 * character(0) 0.233520956918801 42 0.0633208191071798 0.635873516851705 888 0.35801719486658 2 2 0 -6.95470196529612 LTS-011 chr6 29691098 29691112 15 * character(0) NA 0 NA 1.443 1 NA NA NA NA NA LTS-011 chr6 29691113 30313227 622115 * character(0) 0.248346822008865 104 0.0800151212137611 0.998455974418252 989 2.16150854559547 2 2 0 -6.73708037956224 LTS-011 chr6 30313228 30313257 30 * character(0) NA 0 NA 1.085 1 NA NA NA NA NA LTS-011 chr6 30313258 30645117 331860 * character(0) 0.26881634797711 6 0.0261565797968057 1.17554626308965 887 0.505894693406459 5 4 1 -6.94176909830561 LTS-011 chr6 30645118 30647015 1898 * character(0) NA 0 NA 1.944 1 NA NA NA NA NA LTS-011 chr6 30647016 30668024 21009 * character(0) NA 0 NA 1.69408728770972 135 0.576266644200714 6 NA NA -5.76444580162083 LTS-011 chr6 30668025 30668112 88 * character(0) NA 0 NA 0.798 1 NA NA NA NA NA LTS-011 chr6 30668113 30681026 12914 * character(0) 0.221868656926883 2 0.10040916292849 0.838581524661526 138 0.282104168575068 2 2 0 -6.76652698233776 LTS-011 chr6 30681027 30882023 200997 * character(0) 0.214152118366448 20 0.0587514613480066 1.32559794638174 437 0.550879107118646 7 6 1 -6.78403317009831 LTS-011 chr6 30882024 30882167 144 * character(0) NA 0 NA 0.851 1 NA NA NA NA NA LTS-011 chr6 30882168 30978561 96394 * character(0) 0.23521355277589 26 0.0818140198630641 0.862729033483872 355 0.444719882456533 2 2 0 -6.74375119341401 LTS-011 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.467 1 NA NA NA NA NA LTS-011 chr6 30993285 30997903 4619 * character(0) 0.190337192389513 5 0.0619249545821392 0.524494579201887 88 0.298094517833142 3 3 0 -6.75192354490238 LTS-011 chr6 30997904 31000000 2097 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-011 chr6 31000001 31134888 134888 * character(0) 0.207729344576476 40 0.0368578697716317 1.09378832275396 417 0.606947151997192 3 3 0 -6.79373363194938 LTS-011 chr6 31134889 31165527 30639 * character(0) 0.307 1 NA 1.24650469568249 13 0.702468130493458 4 4 0 -5.76441834011359 LTS-011 chr6 31165528 31171383 5856 * character(0) 0.322193923972791 6 0.0615036584277716 1.27880299518992 38 0.733702043876933 4 3 1 -6.73925752373789 LTS-011 chr6 31171384 31171454 71 * character(0) 0.243 1 NA 0.275 1 NA NA NA NA NA LTS-011 chr6 31171455 31965504 794050 * character(0) 0.304156267935306 125 0.080490706335897 0.90457818773008 3212 0.421918008661596 4 3 1 -7.02759442318804 LTS-011 chr6 31965505 31979003 13499 * character(0) 0.353 1 NA 0.269747383827182 68 0.157904281360554 0 0 0 -5.81348952132202 LTS-011 chr6 31979004 31979012 9 * character(0) NA 0 NA 0.639 1 NA NA NA NA NA LTS-011 chr6 31979013 32013759 34747 * character(0) 0.253871357730038 9 0.157800330938957 0.521601867723141 177 0.326050725152342 2 2 0 -6.77312083439601 LTS-011 chr6 32013760 32138441 124682 * character(0) 0.280535829410085 9 0.0711818875214131 0.861829870368407 584 0.335906328797292 2 2 0 -6.87619198571805 LTS-011 chr6 32138442 32138718 277 * character(0) NA 0 NA 1.409 1 NA NA NA NA NA LTS-011 chr6 32138719 32181115 42397 * character(0) 0.331529411555887 6 0.0456669099750209 1.14848909391957 365 0.506258896261246 4 3 1 -6.73618910630329 LTS-011 chr6 32181116 32181379 264 * character(0) NA 0 NA 0.585 1 NA NA NA NA NA LTS-011 chr6 32181380 32498117 316738 * HLA-DRB5 0.264381430026226 37 0.0813785227438048 0.681331537234894 501 0.394936289937732 2 2 0 -6.80270044527125 LTS-011 chr6 32498118 32546466 48349 * HLA-DRB5 NA 0 NA 1.644 1 NA NA NA NA NA LTS-011 chr6 32546467 32549416 2950 * HLA-DRB5 0.31943777330758 26 0.0835091519627547 1.93585738540799 61 1.66274445723167 20 14 6 -6.73453310418595 LTS-011 chr6 32549417 32549452 36 * HLA-DRB5 0.379 1 NA 1.003 1 NA NA NA NA NA LTS-011 chr6 32549453 32552127 2675 * HLA-DRB5 0.397923867254993 10 0.0715700899662546 1.46789962137204 29 3.91431005125295 14 8 6 -6.73309863920478 LTS-011 chr6 32552128 32552132 5 * HLA-DRB5 NA 0 NA 0.201 1 NA NA NA NA NA LTS-011 chr6 32552133 32709179 157047 * c(HLA-DQA1, HLA-DRB5) 0.42750205071801 98 0.0578077372285416 0.935246301940925 271 0.659787304759806 2 1 1 -6.84870004927396 LTS-011 chr6 32709180 32709204 25 * character(0) 0.236 1 NA 1.685 1 NA NA NA NA NA LTS-011 chr6 32709205 32795782 86578 * character(0) 0.317920174935288 34 0.088041393602795 0.818570036463833 225 0.411161337863822 1 1 0 -6.76626383985803 LTS-011 chr6 32795783 33055035 259253 * character(0) 0.280503944371661 34 0.0702383324913017 1.19362322937749 741 5.1254854373585 5 4 1 -6.73416192732308 LTS-011 chr6 33055036 33080197 25162 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-011 chr6 33080198 33163794 83597 * character(0) 0.229514443170325 14 0.121474571119109 0.715010476539815 412 0.431468247313463 2 2 0 -6.74803766288913 LTS-011 chr6 33163795 33399588 235794 * character(0) 0.301978578291126 25 0.0627781278259661 1.11200238938039 1105 0.497855546355948 5 4 1 -6.82284433979125 LTS-011 chr6 33399589 35706370 2306782 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.246214508159483 54 0.0956849831624338 0.846432541585428 2849 0.448648557412365 2 2 0 -6.74396989142889 LTS-011 chr6 35706371 35715086 8716 * ARMC12 NA 0 NA 0.554 1 NA NA NA NA NA LTS-011 chr6 35715087 35960502 245416 * c(SLC26A8, CLPS, ARMC12, LHFPL5, CLPSL1, CLPSL2, SRPK1) 0.204821634437231 4 0.139767664357676 0.620073481392164 355 0.470298739272915 2 2 0 -6.83234939082013 LTS-011 chr6 35960503 35965480 4978 * SLC26A8 NA 0 NA 1.378 1 NA NA NA NA NA LTS-011 chr6 35965481 37013135 1047655 * c(MIR3925, CDKN1A, STK38, SLC26A8, MAPK14, FGD2, PI16, C6orf89, KCTD20, PXT1, MTCH1, BRPF3, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, MAPK13, CPNE5, SRSF3) 0.277390864708402 43 0.0740693234295493 0.822331252175484 1633 0.394546943151726 2 2 0 -6.84187697776223 LTS-011 chr6 37013136 37180070 166935 * c(TMEM217, PIM1) 0.310470026268027 4 0.0543966910758366 1.32206712661366 92 0.69217426902855 4 3 1 -6.79906664985347 LTS-011 chr6 37180071 39304381 2124311 * c(LOC100131047, MIR4462, BTBD9, CCDC167, DNAH8, KIF6, TMEM217, CMTR1, MDGA1, GLO1, GLP1R, TBC1D22B, SAYSD1, ZFAND3, KCNK16, KCNK5, KCNK17, RNF8) 0.25895445543313 75 0.105585417366038 0.722894681311119 2110 0.359311920994686 2 2 0 -6.87672355226199 LTS-011 chr6 39304382 39311035 6654 * KIF6 NA 0 NA 0.946 1 NA NA NA NA NA LTS-011 chr6 39311036 43139232 3828197 * c(TOMM6, MIR4641, CNPY3, FRS3, APOBEC2, FOXP4, KLHDC3, TAF8, PTCRA, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, UBR2, DAAM2, GLTSCR1L, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, MDFI, MEA1, MOCS1, C6orf226, ATP6V0CP3, NFYA, MRPL2, PEX6, PGC, TREM2, TREM1, MRPS10, PPP2R5D, TRERF1, LRFN2, PTK7, PRPH2, C6orf132, SRF, TBCC, BYSL, TDRG1, TFEB, TREML2, RRP36, NA NA NA NA NA NA NA NA NA LTS-011 CCND3, KLC4, NCR2, MED20, CUL7) 0.25617103602692 100 0.0905547415220275 0.814221071527871 4173 0.404936259719163 2 2 0 -6.7411693973593 LTS-011 NA NA NA NA LTS-011 chr6 43139233 43139312 80 * SRF NA 0 NA 1.356 1 NA NA NA NA NA LTS-011 chr6 43139313 43153330 14018 * c(CUL9, SRF) NA 0 NA 1.20547495558905 119 0.340765658081018 4 NA NA -5.76443526769778 LTS-011 chr6 43153331 43153657 327 * CUL9 NA 0 NA 0.465 1 NA NA NA NA NA LTS-011 chr6 43153658 43475126 321469 * c(DNPH1, SLC22A7, LRRC73, CUL9, ZNF318, CRIP3, DLK2, TTBK1, ABCC10, TJAP1) 0.205235422368731 12 0.10133125247066 0.719620347865838 1071 0.341694828191983 2 2 0 -6.85153948123135 LTS-011 chr6 43475127 43475248 122 * LRRC73 NA 0 NA 1.036 1 NA NA NA NA NA LTS-011 chr6 43475249 44233487 758239 * c(LINC01512, MIR4647, CAPN11, SLC29A1, C6orf223, RSPH9, LRRC73, YIPF3, HSP90AB1, SLC35B2, NFKBIE, POLH, GTPBP2, MRPS18A, TMEM63B, XPO5, MRPL14, VEGFA, POLR1C, MAD2L1BP) 0.286581121510567 14 0.0672716732509161 0.942843752527707 1397 0.410737845489924 2 2 0 -7.00584419179272 LTS-011 chr6 44233488 44240240 6753 * c(TMEM151B, NFKBIE) NA 0 NA 0.587 1 NA NA NA NA NA LTS-011 chr6 44240241 47199349 2959109 * c(ANKRD66, MIR4642, RCAN2, TCTE1, ADGRF5, TDRD6, SPATS1, ENPP4, ADGRF1, TNFRSF21, MEP1A, TMEM151B, CYP39A1, CLIC5, AARS2, ENPP5, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.242052473659502 38 0.0796030380700748 0.774283926273987 1904 0.351073269175726 2 2 0 -6.76892073151308 LTS-011 chr6 47199350 47199458 109 * TNFRSF21 NA 0 NA 1.33 1 NA NA NA NA NA LTS-011 chr6 47199459 49456167 2256709 * c(OPN5, ADGRF4, ADGRF2, CD2AP, TNFRSF21, PTCHD4, MUT, CENPQ) 0.149585978658383 4 0.106073873629026 1.14199175007129 702 0.47572158495371 4 4 0 -6.7742118138033 LTS-011 chr6 49456168 52055339 2599172 * c(CRISP3, C6orf141, CRISP1, DEFB110, DEFB112, DEFB113, DEFB114, IL17A, GLYATL3, MIR206, MIR133B, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.237395665806932 24 0.131861745504662 0.688405163426301 1146 0.402852925455906 2 2 0 -6.99138285899762 LTS-011 chr6 52055340 52109386 54047 * c(IL17F, IL17A) 0.458 1 NA 0.751408024703647 27 0.292811876247865 2 2 0 -5.76678152961325 LTS-011 chr6 52109387 52129478 20092 * MCM3 NA 0 NA 0.765074554261079 16 0.224447321213687 2 NA NA -5.76530549679797 LTS-011 chr6 52129479 52441715 312237 * c(EFHC1, MCM3, PAQR8, TRAM2) 0.373486841342677 12 0.0805125154961336 1.11974933412863 441 0.437979505264276 3 2 1 -6.74641961047097 LTS-011 chr6 52441716 52522145 80430 * c(TRAM2-AS1, TRAM2) NA 0 NA 0.676 1 NA NA NA NA NA LTS-011 chr6 52522146 52849454 327309 * c(GSTA5, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, LOC730101, GSTA7P) 0.328184855526502 5 0.18335266564738 0.714559123576521 188 0.473087763949199 1 1 0 -6.75684872250758 LTS-011 chr6 52849455 52850251 797 * GSTA4 NA 0 NA 1.051 1 NA NA NA NA NA LTS-011 chr6 52850252 53159000 308749 * c(MIR5685, ICK, FBXO9, GSTA4, ELOVL5, GCM1) 0.373154857559835 4 0.244551971299899 1.11831205549915 454 0.450207057554455 3 2 1 -6.74123334968979 LTS-011 chr6 53159001 55378086 2219086 * c(MLIP-IT1, FAM83B, TINAG, GCLC, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, ELOVL5, RPS16P5, MLIP) 0.319886171552206 14 0.119337088364601 0.767318916108542 892 0.323558695810221 2 2 0 -6.99963686892617 LTS-011 chr6 55378087 57512678 2134592 * c(BEND6, ZNF451, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.359628019687071 60 0.0716360544264221 0.938080177935759 1894 0.370648616851736 3 2 1 -6.85105074622982 LTS-011 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.04859697239218 19 0.571154954855633 3 NA NA -5.76565386865797 LTS-011 chr6 62390154 62442604 52451 * KHDRBS2 0.391 1 NA 0.795734657206881 27 0.45569172553158 2 2 0 -5.76448269840002 LTS-011 chr6 62442605 64425417 1982813 * c(KHDRBS2, PHF3, LGSN, PTP4A1) NA 0 NA 0.932018568294454 445 0.396910411381999 3 NA NA -5.82620983567774 LTS-011 chr6 64425418 64429898 4481 * EYS NA 0 NA 0.762 1 NA NA NA NA NA LTS-011 chr6 64429899 74214299 9784401 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, RIMS1, MTO1, DPPA5, EYS, NA, MIR30A, MIR30C2, LOC441155, OOEP, SLC25A51P1, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472, KHDC1) 0.260837644056751 60 0.124515041180678 0.723062757204128 2687 0.391837440497459 2 2 0 -7.22939828041951 LTS-011 chr6 74214300 74214574 275 * character(0) NA 0 NA 1.776 1 NA NA NA NA NA LTS-011 chr6 74214575 74230730 16156 * EEF1A1 0.334753637568614 3 0.0617980582219215 1.28889534124584 148 0.505655619411252 4 3 1 -6.73933900347992 LTS-011 chr6 74230731 74303061 72331 * EEF1A1 NA 0 NA 0.718 1 NA NA NA NA NA LTS-011 chr6 74303062 78173482 3870421 * c(LOC100506804, COL12A1, COX7A2, CD109, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, MYO6, TMEM30A) 0.248375878545455 21 0.065104531332312 0.854174694350373 1541 0.377636452034702 2 2 0 -6.77292542089235 LTS-011 chr6 78173483 80750444 2576962 * c(HMGN3-AS1, IRAK1BP1, LCA5, PHIP, RNY4, ELOVL4, TTK, SH3BGRL2, LINC01621, HMGN3) 0.30668367863544 15 0.108585844907546 1.40062803117715 713 0.624148904433617 5 4 1 -6.76320165587202 LTS-011 chr6 80750445 80751832 1388 * TTK NA 0 NA 0.683 1 NA NA NA NA NA LTS-011 chr6 80751833 82459242 1707410 * c(FAM46A, BCKDHB, TTK) 0.393355902261403 12 0.0629538070189708 1.06967446823555 309 0.817275706865337 3 2 1 -6.75992765056536 LTS-011 chr6 82459243 82459349 107 * FAM46A NA 0 NA 0.835 1 NA NA NA NA NA LTS-011 chr6 82459350 82898790 439441 * c(IBTK, FAM46A) 0 2 0 0.861631124988329 100 0.419478389301415 0 0 0 -Inf LTS-011 chr6 82898791 83075031 176241 * c(IBTK, TPBG) 0.471 1 NA 0.838878499653679 145 0.447811221964391 2 2 0 -5.76491416566603 LTS-011 chr6 83075032 87879712 4804681 * c(SYNCRIP, CGA, MRAP2, RWDD2A, RIPPLY2, PRSS35, CEP162, DOPEY1, ZNF292, SNORD50A, HTR1E, SNHG5, ME1, NT5E, CYB5R4, PGM3, SNX14, SNORD50B, TPBG, UBE3D, TBX18, SNAP91) 0.458768043064229 18 0.0333264698816308 0.79541118108945 1914 0.376935578239528 2 1 1 -8.10221296719522 LTS-011 chr6 87879713 87880096 384 * ZNF292 NA 0 NA 1.03602265123396 7 0.580797850251826 3 NA NA -5.76441028510317 LTS-011 chr6 87880097 87925654 45558 * ZNF292 NA 0 NA 3.446 1 NA NA NA NA NA LTS-011 chr6 87925655 87965528 39874 * ZNF292 0.162 1 NA 3.07169450752968 57 1.55765655589263 13 13 0 -5.76441068619361 LTS-011 chr6 87965529 88757887 792359 * c(SLC35A1, CFAP206, C6orf163, ZNF292, ORC3, GJB7, AKIRIN2, RARS2, SMIM8, LINC01590, SPACA1) 0.0960469204677891 12 0.0343811082727216 3.69265617851187 777 1.65812911419261 19 18 1 -6.73877360811686 LTS-011 chr6 88757888 88763649 5762 * SPACA1 NA 0 NA 2.775 1 NA NA NA NA NA LTS-011 chr6 88763650 88853635 89986 * c(CNR1, SPACA1) 0.089090882065783 3 0.00750555349946513 2.81783945736237 129 0.91289743953072 9 9 0 -6.7375612985696 LTS-011 chr6 88853636 89479606 625971 * c(CNR1, RNGTT) NA 0 NA 2.64399676597344 109 1.11144207598834 11 NA NA -5.76446560202287 LTS-011 chr6 89479607 89511234 31628 * RNGTT NA 0 NA 1.221 1 NA NA NA NA NA LTS-011 chr6 89511235 89806230 294996 * c(PNRC1, SRSF12, RNGTT) 0.462 1 NA 1.2103343609136 133 1.55052248839318 4 4 0 -5.76442583959776 LTS-011 chr6 89806231 89875045 68815 * c(PM20D2, SRSF12) 0.459113229408211 5 0.0324237567225021 0.900900399780356 169 0.437614216785932 2 1 1 -8.16933634602027 LTS-011 chr6 89875046 96653455 6778410 * c(MIR4464, MIR4643, FUT9, PM20D2, EPHA7, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, LYRM2, RRAGD, BACH2, TSG1, MAP3K7, MANEA, GJA10, CASP8AP2) 0.425582181126931 47 0.100532545896634 0.765885555820935 2162 0.343699267166201 2 1 1 -6.88679805776699 LTS-011 chr6 96653456 96969653 316198 * FUT9 NA 0 NA 2.924 1 NA NA NA NA NA LTS-011 chr6 96969654 97002841 33188 * UFL1 NA 0 NA 1.7375915709374 118 0.797134006030017 6 NA NA -5.76450844103133 LTS-011 chr6 97002842 101305904 4303063 * c(TSTD3, MIR2113, ASCC3, KLHL32, UFL1, MMS22L, PNISR, FBXL4, NDUFAF4, COQ3, POU3F2, PRDM13, SIM1, MCHR2-AS1, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.426863560810953 21 0.0378914489662497 0.823322467254465 1781 0.392986501790046 2 1 1 -6.97659728539054 LTS-011 chr6 101305905 101306022 118 * ASCC3 NA 0 NA 0.615 1 NA NA NA NA NA LTS-011 chr6 101306023 105821430 4515408 * c(LIN28B-AS1, ASCC3, BVES, BVES-AS1, GRIK2, LIN28B, PREP, HACE1, POPDC3) 0.346585395353844 4 0.226678185981801 0.652386378030782 767 0.262735266893696 1 1 0 -6.94459642042177 LTS-011 chr6 105821431 105824009 2579 * PREP NA 0 NA 1.56 1 NA NA NA NA NA LTS-011 chr6 105824010 109818744 3994735 * c(LOC100422737, LOC100996634, SEC63, AIM1, CCDC162P, AK9, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, C6orf203, SOBP, QRSL1, PREP, PDSS2, BEND3, PRDM1, MICAL1, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5, ZBTB24) 0.427589781219614 37 0.110002136206394 0.818338580130582 2707 0.370977246681151 2 1 1 -6.76509577042458 LTS-011 chr6 109818745 110935017 1116273 * c(AK9, CDK19, GPR6, CDC40, METTL24, DDO, SLC22A16, WASF1, FIG4) 0.4020852422451 19 0.148303545205325 0.655370183796688 891 0.353780356135904 1 1 0 -6.91809062842428 LTS-011 chr6 110935018 110935116 99 * CDK19 NA 0 NA 0.783 1 NA NA NA NA NA LTS-011 chr6 110935117 117073559 6138443 * c(TRAPPC3L, TRAF3IP2, GTF3C6, SLC16A10, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, CDK19, TSPYL4, FRK, FYN, FAM26E, AMD1, LINC01268, FLJ34503, DSE, HDAC2, RSPH4A, KPNA5, LAMA4, MARCKS, FAM26F, GSTM2P1, RFPL4B, TUBE1, RWDD1, REV3L, FAM229B, TRAF3IP2-AS1, TSPYL1, TPI1P3, RPF2, WISP3, MFSD4B) 0.434726617672076 73 0.0873475449414918 0.851956989317663 3201 0.436161550326088 2 1 1 -6.85570589476168 LTS-011 chr6 117073560 117073661 102 * FAM162B NA 0 NA 0.542 1 NA NA NA NA NA LTS-011 chr6 117073662 117253108 179447 * c(FAM162B, GPRC6A, RFX6) 0.452544561128563 5 0.0310757139901885 0.571394909855685 202 0.191428839175181 2 1 1 -8.3380936578182 LTS-011 chr6 117253109 119501597 2248489 * c(LOC100287632, NUS1, RFX6, SLC35F1, BRD7P3, VGLL2, MCM9, ASF1A, DCBLD1, CEP85L, MAN1A1, PLN, GOPC, ROS1, MIR548B, FAM184A) 0.419526834327849 29 0.0625952869690596 0.784009307813901 1390 0.373929076594775 2 1 1 -6.79083773207737 LTS-011 chr6 119501598 119509576 7979 * MAN1A1 NA 0 NA 1.26 1 NA NA NA NA NA LTS-011 chr6 119509577 122792987 3283411 * c(TBC1D32, GJA1, LOC285762, HSF2, MAN1A1, SERINC1) 0.321934787928132 19 0.0983232822695485 1.20372314652566 488 0.644208393141971 4 3 1 -6.73758332936958 LTS-011 chr6 122792988 123022543 229556 * PKIB NA 0 NA 0.346 1 NA NA NA NA NA LTS-011 chr6 123022544 125404841 2382298 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, PKIB, RNF217-AS1) 0.383682363019905 18 0.148863065997919 0.755860567210426 799 0.377293270086295 2 1 1 -6.79591255102118 LTS-011 chr6 125404842 125404845 4 * character(0) NA 0 NA 0.881 1 NA NA NA NA NA LTS-011 chr6 125404846 127647717 2242872 * c(MIR5695, NCOA7, HINT3, HEY2, CENPW, HDDC2, ECHDC1, TRMT11, LOC643623, TPD52L1, RNF146, RSPO3) 0.443240011638805 11 0.0668168459977789 0.96767387448435 926 0.495067820053606 2 1 1 -7.11101009091337 LTS-011 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.511 1 NA NA NA NA NA LTS-011 chr6 127648124 132859733 5211610 * c(SMLR1, LINC01013, TMEM200A, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, C6orf58, ARG1, SOGA3, THEMIS, LAMA2, ENPP1, ENPP3, ECHDC1, PTPRK, CTAGE9, OR2A4, STX7, L3MBTL3, ARHGAP18, MED23, AKAP7, KIAA0408) 0.378311650022008 37 0.158075266217678 0.774374536517553 2655 0.389817343713894 2 1 1 -6.79606553639566 LTS-011 chr6 132859734 133092269 232536 * c(SLC18B1, TAAR1, TAAR6, VNN3, TAAR8, VNN2, VNN1, TAAR5, TAAR2, TAAR3) 0.452599296827421 11 0.0285019935506911 0.606289157077858 386 0.299883475934712 2 1 1 -8.31415393309677 LTS-011 chr6 133092270 133093257 988 * SLC18B1 NA 0 NA 1.357 1 NA NA NA NA NA LTS-011 chr6 133093258 137815274 4722017 * c(LINC00271, NHEG1, MIR3662, HBS1L, MTFR2, IL22RA2, SLC18B1, LINC01312, SLC2A12, LINC01010, OLIG3, EYA4, PDE7B, LINC00326, SLC35D3, IFNGR1, HMGA1P7, MAP3K5, MYB, PEX7, IL20RA, AHI1, SNORA33, RPS12, SGK1, ALDH8A1, TCF21, MAP7, TBPL1, BCLAF1) 0.410401126633567 35 0.0980864992980064 0.835664543652114 2453 0.441705748731996 2 1 1 -6.74769496840824 LTS-011 chr6 137815275 137815353 79 * OLIG3 NA 0 NA 1.307 1 NA NA NA NA NA LTS-011 chr6 137815354 138204432 389079 * c(LOC100130476, OLIG3, TNFAIP3) 0.485 1 NA 1.34733770070314 114 0.60140868511874 5 5 0 -5.76700437963309 LTS-011 chr6 138204433 138411934 207502 * c(PERP, TNFAIP3) NA 0 NA 0.774 1 NA NA NA NA NA LTS-011 chr6 138411935 138665644 253710 * c(ARFGEF3, PBOV1, PERP) 0.470716962668763 4 0.0160078105935821 0.672342978887077 474 0.243426558970147 2 1 1 -11.4337569169542 LTS-011 chr6 138665645 139135726 470082 * c(MIR3145, GVQW2, HEBP2, CCDC28A, ECT2L, FLJ46906, ARFGEF3, NHSL1) 0.482999398694479 4 0.0152534149181967 0.944224982123261 329 0.458360781878691 2 1 1 -12.4196659113889 LTS-011 chr6 139135727 139143940 8214 * ECT2L NA 0 NA 0.419 1 NA NA NA NA NA LTS-011 chr6 139143941 139145462 1522 * ECT2L NA 0 NA 0.423169676033747 40 0.188461706305524 0 NA NA -5.76450255637616 LTS-011 chr6 139145463 150239907 11094445 * c(UST-AS1, LOC100132735, MIR3668, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, RAB32, KATNA1, GINM1, ADAT2, STXBP5, RAET1E, LOC153910, ZC2HC1B, TXLNB, TAB2, SASH1, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, ZC3H12D, ECT2L, NUP43, RAET1G, SUMO4, SAMD5, NMBR, PCMT1, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, RPS18P9, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, NA NA NA NA NA NA NA NA NA LTS-011 LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, PHACTR2) 0.399675031950779 92 0.138646871471895 0.829722097148391 4763 0.394295411958185 2 1 1 -6.75023504501935 LTS-011 NA NA NA NA LTS-011 chr6 150239908 150240030 123 * c(RAET1E-AS1, RAET1G) NA 0 NA 0.622 1 NA NA NA NA NA LTS-011 chr6 150240031 150385852 145822 * c(RAET1E-AS1, RAET1L, RAET1G, RAET1K, ULBP3, ULBP2, ULBP1) 0.450693776249629 3 0.0370405183549043 0.527632531645796 99 0.282121833107132 0 0 0 -7.68926256732469 LTS-011 chr6 150385853 150385886 34 * ULBP3 0.416 1 NA 1.833 1 NA NA NA NA NA LTS-011 chr6 150385887 152642405 2256519 * c(ESR1, SYNE1, MTHFD1L, IYD, RMND1, PLEKHG1, ZBTB2, ULBP3, ARMT1, CCDC170, PPP1R14C, AKAP12) 0.417324239735774 29 0.125019170943693 0.916144698221277 1785 0.882933035008789 2 1 1 -6.76612476531761 LTS-011 chr6 152642406 154440185 1797780 * c(SYNE1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.444807866150874 28 0.099458926408483 0.746706909976944 1019 0.475448401145779 2 1 1 -6.87506455119468 LTS-011 chr6 154440186 154440190 5 * OPRM1 NA 0 NA 1.036 1 NA NA NA NA NA LTS-011 chr6 154440191 160577095 6136905 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SLC22A1, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.42528559702414 107 0.104765271550654 0.883731397451239 3843 1.06753984842623 2 1 1 -6.78381745488173 LTS-011 chr6 160577096 161174382 597287 * c(LPA, PLG, SLC22A1, SLC22A3, SLC22A2, LPAL2) 0.416373071629813 17 0.114477906936101 0.631356466609406 454 0.378365662853618 2 1 1 -6.89844731731683 LTS-011 chr6 161174383 161412766 238384 * PLG NA 0 NA 0.887 1 NA NA NA NA NA LTS-011 chr6 161412767 167585786 6173020 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, MAP3K4, LINC00602, PARK2, MPC1, AGPAT4, RPS6KA2, T, AGPAT4-IT1, RNASET2, LINC00473, QKI) 0.401772801686402 63 0.137187529793247 0.797158395720713 2146 0.383447550985957 2 1 1 -6.74319474351066 LTS-011 chr6 167585787 167587258 1472 * TCP10L2 NA 0 NA 0.123 1 NA NA NA NA NA LTS-011 chr6 167587259 167622142 34884 * TCP10L2 0.315108236976837 12 0.13031256131457 0.481122788839405 179 0.610508991579319 1 1 0 -6.74051854687232 LTS-011 chr6 167622143 167786004 163862 * c(UNC93A, TCP10, TTLL2) 0.399530632403905 9 0.0516091077233467 0.683335139276662 155 0.516594072452771 2 1 1 -6.74597924190008 LTS-011 chr6 167786005 167789428 3424 * TCP10 0.304249569514127 4 0.222641715168863 0.409566729872228 96 0.554958044486564 1 1 0 -6.73998634095144 LTS-011 chr6 167789429 167789493 65 * TCP10 0.482 1 NA 1.325 1 NA NA NA NA NA LTS-011 chr6 167789494 168371755 582262 * c(LINC01558, AFDN, AFDN-AS1, TCP10) 0.42205753684918 16 0.0573399221020282 0.883483735798979 442 0.348775657854745 2 1 1 -6.82264143414185 LTS-011 chr6 168371756 168376892 5137 * c(HGC6.3, AFDN) 0.25 1 NA 0.939558060088631 21 0.374320113831795 3 3 0 -5.76456118160458 LTS-011 chr6 168376893 168457346 80454 * c(HGC6.3, KIF25, FRMD1) 0.176952755782593 11 0.202091743342653 0.942436504638269 97 0.809578791198285 3 3 0 -6.73885169528716 LTS-011 chr6 168457347 168457801 455 * FRMD1 0.494 1 NA 0.623891024175026 9 0.150899340989651 1 1 0 -5.76442033394088 LTS-011 chr6 168457802 170595317 2137516 * c(LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, SMOC2, TCTE3, THBS2, FRMD1, LINC00574) 0.451086699448329 18 0.0315213383478848 0.857281197485633 960 0.358374901419772 2 1 1 -7.93268277599275 LTS-011 chr6 170595318 170893599 298282 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.822864425694768 341 0.381836981270351 2 NA NA -5.76457655071009 LTS-011 chr7 193047 296739 103693 * FAM20C 0.161 1 NA 0.887880986211024 87 0.289799586935658 2 2 0 -5.77010114340773 LTS-011 chr7 296740 1732941 1436202 * c(WI2-2373I1.2, ADAP1, PSMG3-AS1, GPR146, TMEM184A, SUN1, TFAMP1, INTS1, GPER1, UNCX, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, MAFK, MICALL2, PSMG3, C7orf50, ZFAND2A, COX19) 0.238910559565303 54 0.0656763127565988 0.862080919622127 1727 0.420711044735438 2 2 0 -6.75574532136241 LTS-011 chr7 1732942 1889005 156064 * c(MIR4655, ELFN1, MAD1L1) 0.182343114421059 6 0.0618473928310644 0.498024162318869 150 0.418078001403172 3 3 0 -7.02629021304498 LTS-011 chr7 1889006 4838899 2949894 * c(MIR4648, MIR4656, AMZ1, BRAT1, SDK1, FOXK1, IQCE, GNA12, SNX8, MRM2, LFNG, NUDT1, CHST12, RADIL, TTYH3, MAD1L1, CARD11, EIF3B, AP5Z1) 0.263745126600289 75 0.0728080210411458 0.85404562158472 2220 0.392220158430642 2 2 0 -6.79727127262313 LTS-011 chr7 4838900 5071332 232433 * c(RBAK-RBAKDN, MMD2, RNF216P1, RADIL, PAPOLB) 0.242667643345969 15 0.0861972820254295 0.556099144503423 298 0.206699383345931 2 2 0 -7.17195503927967 LTS-011 chr7 5071333 5071413 81 * RBAK-RBAKDN NA 0 NA 1.558 1 NA NA NA NA NA LTS-011 chr7 5071414 5920657 849244 * c(RBAK-RBAKDN, RNF216-IT1, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.251632168631242 32 0.0656580753822652 0.843088858721676 1050 0.438388045178195 2 2 0 -6.7414639009868 LTS-011 chr7 5920658 5922083 1426 * OCM NA 0 NA 0.484 1 NA NA NA NA NA LTS-011 chr7 5922084 6022570 100487 * c(RSPH10B, CCZ1, PMS2, OCM) 0.292128974292917 10 0.138876603901129 0.431490587440726 175 0.408999004499333 1 1 0 -6.81061513571397 LTS-011 chr7 6022571 6026483 3913 * PMS2 NA 0 NA 0.655 1 NA NA NA NA NA LTS-011 chr7 6026484 6786822 760339 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.248357228386212 26 0.0932899862710974 0.787506606878294 1293 0.427017924485195 2 2 0 -6.73614861966168 LTS-011 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.026 1 NA NA NA NA NA LTS-011 chr7 6790904 6844723 53820 * c(CCZ1B, PMS2CL, RSPH10B2) 0.228 1 NA 0.268959072378761 82 0.201044987931901 0 0 0 -5.88547556537578 LTS-011 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.083 1 NA NA NA NA NA LTS-011 chr7 6845571 16921742 10076172 * c(LOC100131257, ISPD-AS1, LRRC72, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, ETV1, VWDE, CCZ1B, THSD7A, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, UMAD1, ISPD, SCIN, PHF14) 0.248732869752001 64 0.117618970503156 0.792417624070061 2742 0.394474905375359 2 2 0 -6.75971588540921 LTS-011 chr7 16921743 17338245 416503 * character(0) NA 0 NA 1.184 1 NA NA NA NA NA LTS-011 chr7 17338246 17385723 47478 * AHR 0.231 1 NA 1.18265495172395 132 0.677295010869551 4 4 0 -5.76449858116369 LTS-011 chr7 17385724 17832615 446892 * c(AHR, SNX13) NA 0 NA 0.752 1 NA NA NA NA NA LTS-011 chr7 17832616 21631218 3798603 * c(MIR3146, MACC1-AS1, PRPS1L1, TWISTNB, SP8, FERD3L, RPL23P8, SNX13, TMEM196, ABCB5, MACC1, ITGB8, SP4, TWIST1, DNAH11, HDAC9) 0.246661545641668 32 0.120433587474323 0.830669418207445 1513 0.400064077206724 2 2 0 -6.73939769072166 LTS-011 chr7 21631219 21639403 8185 * DNAH11 NA 0 NA 0.349 1 NA NA NA NA NA LTS-011 chr7 21639404 21894084 254681 * DNAH11 0.183483139497775 8 0.120180816153946 0.563717217653414 301 0.401446174097692 2 2 0 -7.01411171309052 LTS-011 chr7 21894085 21901435 7351 * DNAH11 NA 0 NA 0.893 1 NA NA NA NA NA LTS-011 chr7 21901436 26778539 4877104 * c(LOC100506178, KLHL7-AS1, RNU6-16P, GPNMB, IGF2BP3, NUPL2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, FAM221A, IL6, MIR148A, LOC441204, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SNORD93, FAM126A, DNAH11, SKAP2, CCDC126, NFE2L3, RAPGEF5, KIAA0087) 0.27401637490191 47 0.111545326446198 0.809496067051752 2550 0.534500427520064 2 2 0 -6.77187408625097 LTS-011 chr7 26778540 26779482 943 * SKAP2 NA 0 NA 1.175 1 NA NA NA NA NA LTS-011 chr7 26779483 27237649 458167 * c(HOXA-AS3, HOTAIRM1, HOXA10-HOXA9, HOXA10-AS, HOXA11-AS, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, MIR196B, SKAP2) 0.319084963312817 2 0.0565685424949238 1.1154985150401 613 0.428693339630112 4 3 1 -6.76326804630742 LTS-011 chr7 27237650 27237746 97 * HOXA13 NA 0 NA 0.584 1 NA NA NA NA NA LTS-011 chr7 27237747 30008764 2771018 * c(JAZF1-AS1, HOTTIP, LOC100506497, MIR550A3, HIBADH, CHN2, EVX1, JAZF1, PRR15, HOXA13, DPY19L2P3, CPVL, WIPF3, LOC646762, TAX1BP1, CREB5, SCRN1, TRIL) 0.2731790740481 47 0.0804764776798754 0.76252082004192 1360 0.373587026304449 2 2 0 -6.85172497378728 LTS-011 chr7 30008765 30008769 5 * SCRN1 NA 0 NA 1.009 1 NA NA NA NA NA LTS-011 chr7 30008770 31008785 1000016 * c(MIR550B1, INMT-FAM188B, NOD1, INMT, CRHR2, DKFZP586I1420, MTURN, ZNRF2, GARS, GHRHR, AQP1, LOC401320, FKBP14, MIR550A1, GGCT, FAM188B, PLEKHA8, SCRN1) 0.217861437764769 28 0.115108874158567 0.940148392735512 1093 0.478841270013945 3 3 0 -6.77214566477379 LTS-011 chr7 31008786 31009146 361 * GHRHR NA 0 NA 0.577 1 NA NA NA NA NA LTS-011 chr7 31009147 35944469 4935323 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, ADCYAP1R1, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, GHRHR, BBS9, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, DPY19L2P1, TBX20, RP9, NEUROD6, HERPUD2, MIR550A2, SEPT7) 0.237940644693359 50 0.109750656173948 0.756960156200574 2267 0.451118472910253 2 2 0 -6.81013721349177 LTS-011 chr7 35944470 36118861 174392 * SEPT7 NA 0 NA 0.890841754406715 16 0.255346953509664 2 NA NA -5.77767548129205 LTS-011 chr7 36118862 36278660 159799 * EEPD1 0.429 1 NA 2.02842098458669 55 0.561634904835843 8 8 0 -5.76447276141697 LTS-011 chr7 36278661 36364219 85559 * c(KIAA0895, EEPD1) 0.368016110662758 8 0.0351626323571731 1.76389454615379 100 0.72491120710182 6 4 2 -6.74069675400461 LTS-011 chr7 36364220 38433753 2069534 * c(MIR1200, TRG-AS1, AOAH-IT1, KIAA0895, AMPH, AOAH, GPR141, TARP, NME8, ANLN, EPDR1, SFRP4, STARD3NL, ELMO1) 0.357133616037759 40 0.11786959330396 1.34014782167705 1089 0.758420245373016 4 3 1 -6.7847326942695 LTS-011 chr7 38433754 38457443 23690 * AMPH NA 0 NA 0.8 1 NA NA NA NA NA LTS-011 chr7 38457444 39413195 955752 * c(POU6F2, VPS41, AMPH, FAM183BP) 0.196140645801546 7 0.142822733951333 0.730726487647424 434 0.377353566432685 2 2 0 -6.85006017753016 LTS-011 chr7 39413196 39446179 32984 * c(POU6F2-AS1, POU6F2) NA 0 NA 1.663 1 NA NA NA NA NA LTS-011 chr7 39446180 40539116 1092937 * c(POU6F2, MPLKIP, LINC00265, YAE1D1, RALA, LOC646999, SUGCT, CDK13) 0.371966072082701 14 0.0654566797437582 1.63808399233628 557 0.633722562947039 6 4 2 -6.74154577292413 LTS-011 chr7 40539117 40723571 184455 * SUGCT NA 0 NA 1.136 1 NA NA NA NA NA LTS-011 chr7 40723572 40900175 176604 * SUGCT 0.290353591777217 2 0.0883883476483185 0.888743689051556 20 0.304651206947776 2 2 0 -6.89181999060447 LTS-011 chr7 40900176 42005678 1105503 * c(GLI3, INHBA-AS1, INHBA, SUGCT) 0.246 1 NA 0.764696965437941 261 0.371977169802276 2 2 0 -5.78258547738092 LTS-011 chr7 42005679 43666243 1660565 * c(MIR3943, LOC100506895, HECW1, GLI3, COA1, PSMA2, MRPL32, C7orf25, STK17A) 0.29476818747686 7 0.0599400494144735 0.863923167549478 525 0.34052537215358 2 2 0 -7.14252628271762 LTS-011 chr7 43666244 43689932 23689 * c(COA1, STK17A) 0.342 1 NA 1.61679760454329 84 3.16275676017147 6 6 0 -5.76441050032488 LTS-011 chr7 43689933 43810696 120764 * c(COA1, BLVRA) NA 0 NA 0.609 1 NA NA NA NA NA LTS-011 chr7 43810697 44918423 1107727 * c(URGCP-MRPS24, MIR4649, YKT6, AEBP1, TMED4, NUDCD3, LINC00957, GCK, POLM, SPDYE1, DBNL, NPC1L1, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, PURB, MYL7, BLVRA, MRPS24, CAMK2B, ZMIZ2, POLR2J4, H2AFV) 0.23541588676531 47 0.0626059065701097 0.808960842242157 2124 0.371047761090663 2 2 0 -6.74909029969237 LTS-011 chr7 44918424 45114045 195622 * c(SNHG15, PURB, MYO1G, SNORA9, CCM2) 0.225309986107164 6 0.115201996510477 1.00521864176535 330 0.365073062318764 3 3 0 -6.77169645319713 LTS-011 chr7 45114046 47319953 2205908 * c(RAMP3, ADCY1, NACAD, IGFBP1, IGFBP3, SEPT7P2, TNS3, SNORA5B, SNORA5C, CCM2, TBRG4) 0.247290898616138 20 0.0843159939875304 0.658317002211602 801 0.331046341539318 2 2 0 -7.22983624933202 LTS-011 chr7 47319954 47323336 3383 * TNS3 NA 0 NA 0.862 1 NA NA NA NA NA LTS-011 chr7 47323337 48260952 937616 * c(C7orf57, ABCA13, PKD1L1, SUN3, HUS1, C7orf65, TNS3, UPP1, C7orf69, LINC00525) 0.211498334354375 18 0.0921182991905063 0.855414363030317 893 0.413439008213025 2 2 0 -6.82263882606293 LTS-011 chr7 48260953 48266851 5899 * ABCA13 NA 0 NA 0.603 1 NA NA NA NA NA LTS-011 chr7 48266852 50023003 1756152 * c(ZPBP, ABCA13, CDC14C, VWC2) 0.278626948076497 17 0.0953656662227955 0.572293229927977 596 0.230918685852962 1 1 0 -6.94375025561486 LTS-011 chr7 50023004 50143938 120935 * c(C7orf72, ZPBP) 0.268910540239045 2 0.0410121933088197 0.673633223516804 46 0.374559116674602 2 2 0 -6.93874626134265 LTS-011 chr7 50143939 50435777 291839 * c(C7orf72, IKZF1) 0.412 1 NA 0.798862493032528 83 0.255784638650135 2 2 0 -5.76527319155991 LTS-011 chr7 50435778 53930224 3494447 * c(DDC-AS1, IKZF1, DDC, COBL, POM121L12, GRB10, LINC01446, FIGNL1) 0.409523272249865 12 0.123015981962434 0.831505499494821 748 0.315641924680093 2 1 1 -6.74531847457898 LTS-011 chr7 53930225 53934497 4273 * character(0) NA 0 NA 0.450448026740935 70 0.194765521816909 0 NA NA -5.76542303420098 LTS-011 chr7 53934498 55538381 1603884 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, LANCL2, VOPP1) 0.280868083454356 13 0.207118911714367 0.924284662111152 617 0.42670915088198 2 2 0 -6.83554827522519 LTS-011 chr7 55538382 55540401 2020 * VOPP1 0.394677266691096 3 0.0163707055437449 0.48946505557315 66 0.326345073492778 5 3 2 -6.74632546724069 LTS-011 chr7 55540402 55540646 245 * VOPP1 NA 0 NA 0.787 1 NA NA NA NA NA LTS-011 chr7 55540647 55639951 99305 * VOPP1 0.394288903712612 6 0.0252481022389143 1.14905452804327 63 0.508476185513146 5 3 2 -6.74482765331585 LTS-011 chr7 55639952 55748783 108832 * c(FKBP9P1, VOPP1) NA 0 NA 0.351 1 NA NA NA NA NA LTS-011 chr7 55748784 55912289 163506 * c(SEPT14, FKBP9P1) 0.446415668998879 2 0.0424264068711929 0.599171267945684 152 0.249902747814593 2 1 1 -7.4622494845323 LTS-011 chr7 55912290 57532513 1620224 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.346515715715242 16 0.17243103693941 0.958540486604319 584 0.558722045296541 3 2 1 -6.76902678707157 LTS-011 chr7 57532514 57533232 719 * ZNF716 NA 0 NA 1.42906219787304 13 0.858482419215772 5 NA NA -5.76441014661858 LTS-011 chr7 62758725 63023528 264804 * ZNF733P 0.379 1 NA 0.742056014262372 7 0.737163450247604 2 2 0 -5.76686894338754 LTS-011 chr7 63023529 70255824 7232296 * c(LOC100128885, LINC01005, MIR4650-2, ZNF273, VKORC1L1, KCTD7, ZNF92, ZNF679, ERV3-1, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ZNF680, ASL, LOC441242, ZNF727, GS1-124K5.11, SBDS, ZNF117, ZNF107, PMS2P4, TMEM248, TYW1, LOC641746, CCT6P3, CCT6P1, INTS4P2, YWHAEP1, STAG3L4, SNORA22, ZNF736, GTF2IRD1P1, ZNF735, ZNF138, TPST1) 0.373047406568913 24 0.132060592153753 0.866454062736457 1800 0.444789525632388 2 1 1 -6.84895464071589 LTS-011 chr7 70255825 72850369 2594545 * c(MIR3914-1, MIR3914-2, MIR4650-1, TRIM50, SBDSP1, NSUN5P2, AUTS2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, WBSCR17, NCF1B, FZD9, CALN1, FKBP6, POM121) 0.267438698439034 19 0.135583706692463 0.653281969402983 907 0.529307864821717 1 1 0 -6.875694110197 LTS-011 chr7 72850370 73442619 592250 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, MLXIPL, STX1A, FZD9, ABHD11, DNAJC30, BAZ1B, BCL7B) 0.235910105202999 14 0.0812752750205764 0.942898818081156 821 0.427777415129554 2 2 0 -6.78372324624243 LTS-011 chr7 73442620 73449713 7094 * ELN NA 0 NA 0.651 1 NA NA NA NA NA LTS-011 chr7 73449714 74210670 760957 * c(ELN, GTF2I, LIMK1, RFC2, NCF1, MIR590, EIF4H, CLIP2, LAT2, GTF2IRD2, GTF2IRD1) 0.244543196627959 8 0.169698893000851 0.756767393483271 867 0.338533822659721 2 2 0 -6.75368821899718 LTS-011 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.411 1 NA NA NA NA NA LTS-011 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.29289945464576 5 0.0779281720560671 0.529626906320659 227 0.313957461994441 1 1 0 -6.93286010325496 LTS-011 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.315 1 NA NA NA NA NA LTS-011 chr7 75048588 81695854 6647267 * c(POM121C, PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR4651, MIR548AU, MAGI2-AS2, CCL26, SEMA3C, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, GNAI1, HGF, HIP1, HSPB1, GNAT3, RPL13AP17, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, CACNA2D1, UPK3B, TMEM120A, TMEM60, CD36, MAGI2) 0.265045868518213 59 0.102902827063451 0.842378444216448 3040 0.418725227263744 2 2 0 -6.7821865452957 LTS-011 chr7 81695855 81714015 18161 * CACNA2D1 NA 0 NA 0.621 1 NA NA NA NA NA LTS-011 chr7 81714016 86469216 4755201 * c(SEMA3A, SEMA3D, PCLO, GRM3, CACNA2D1, SEMA3E) 0.271603414933816 18 0.150061349110062 0.677271754584454 1099 0.326705628047253 1 1 0 -7.12606653358317 LTS-011 chr7 86469217 86479727 10511 * GRM3 NA 0 NA 0.817 1 NA NA NA NA NA LTS-011 chr7 86479728 87911826 1432099 * c(DBF4, TP53TG1, RUNDC3B, KIAA1324L, GRM3, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, DMTF1) 0.221501206906325 26 0.127668079258437 0.801735127504162 1760 0.41721570084956 2 2 0 -6.75539965405386 LTS-011 chr7 87911827 89859386 1947560 * c(C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, STEAP4) 0.341 1 NA 0.594068874190327 260 0.261399308331523 1 1 0 -5.77109452738301 LTS-011 chr7 89859387 89861635 2249 * STEAP2 NA 0 NA 0.958 1 NA NA NA NA NA LTS-011 chr7 89861636 89929379 67744 * c(STEAP2, CFAP69) NA 0 NA 1.11238815146414 249 0.972275834484393 3 NA NA -5.76472798355004 LTS-011 chr7 89929380 89933245 3866 * CFAP69 NA 0 NA 0.59 1 NA NA NA NA NA LTS-011 chr7 89933246 92463045 2529800 * c(LOC101409256, AKAP9, CDK6, CYP51A1, FAM133B, LRRD1, PEX1, CDK14, ANKIB1, GATAD1, MTERF1, CFAP69, FZD1, RBM48, NA, GTPBP10, KRIT1, CLDN12) 0.231219934930141 32 0.0912674199015392 0.833923778297415 1987 0.376187429064882 2 2 0 -6.75463737165745 LTS-011 chr7 92463046 92728858 265813 * c(CDK6, SAMD9) NA 0 NA 0.51 1 NA NA NA NA NA LTS-011 chr7 92728859 92764946 36088 * c(SAMD9L, SAMD9) NA 0 NA 0.571955716784075 256 0.206706695058149 1 NA NA -5.76609765561664 LTS-011 chr7 92764947 92765045 99 * SAMD9L NA 0 NA 0.658 1 NA NA NA NA NA LTS-011 chr7 92765046 99056951 6291906 * c(MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, PDAP1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, SAMD9L, TMEM130, LMTK2, PEG10, HEPACAM2, BRI3, TECPR1, PTCD1, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, VPS50, BAIAP2L1, SDHAF3, SMURF1, MIR489, CASD1, TAC1, MIR591, MIR653, SHFM1, TFPI2, CALCR, TRRAP, NA NA NA NA NA NA NA NA NA LTS-011 MYH16, BUD31, SGCE, ATP5J2) 0.251165527554239 75 0.110221665272738 0.811073006336337 4274 0.392664193181846 2 2 0 -6.73473467133733 LTS-011 NA NA NA NA LTS-011 chr7 99056952 99569693 512742 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.200207801748397 25 0.114896214036843 0.652976532393024 1095 0.359760950724284 2 2 0 -6.93785357426079 LTS-011 chr7 99569694 99573502 3809 * AZGP1 NA 0 NA 0.853 1 NA NA NA NA NA LTS-011 chr7 99573503 100331765 758263 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, GIGYF1, AZGP1P1, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.258611709755151 45 0.0709921961851577 0.85010410660186 2521 0.380825485599766 2 2 0 -6.75915949846508 LTS-011 chr7 100331766 100391830 60065 * ZAN 0.212481122575028 8 0.105565737812986 0.545301157363166 241 0.272458224620232 2 2 0 -6.86822169045121 LTS-011 chr7 100391831 100392816 986 * ZAN NA 0 NA 1.224 1 NA NA NA NA NA LTS-011 chr7 100392817 100490797 97981 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.296608293561004 11 0.0390365795819068 0.942377136797176 465 0.563513612869411 5 4 1 -6.83488998365043 LTS-011 chr7 100490798 100549573 58776 * ACHE 0.344 1 NA 0.705331543581138 39 0.274271327582019 2 2 0 -5.77391183427439 LTS-011 chr7 100549574 100553077 3504 * character(0) 0.364442511888869 107 0.0868396481627761 0.93951928659493 195 0.789885188691225 6 4 2 -6.73408769116536 LTS-011 chr7 100553078 100553092 15 * character(0) NA 0 NA 0.59 1 NA NA NA NA NA LTS-011 chr7 100553093 100635767 82675 * MUC12 0.411244222264881 23 0.0521670697093036 0.642960476164911 137 0.508188338721688 2 1 1 -6.76099791801387 LTS-011 chr7 100635768 100647920 12153 * MUC12 0.218 1 NA 0.568858186120761 3 0.634026024702457 1 1 0 -5.76448245557357 LTS-011 chr7 100647921 100701995 54075 * c(MUC12, MUC17) 0.185019006285962 5 0.102553888273434 0.462217920334456 324 0.20917342279142 2 2 0 -7.16352105163458 LTS-011 chr7 100701996 100730512 28517 * c(MUC17, TRIM56) NA 0 NA 0.93 1 NA NA NA NA NA LTS-011 chr7 100730513 103008367 2277855 * c(RPL19P12, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, CUX1, LRWD1, FAM185A, FBXL13, NAPEPLD, CLDN15, POLR2J2, DNAJC2, MOGAT3, DPY19L2P2, NAT16, SLC26A5, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, PSMC2, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.245217529961458 53 0.107959881410617 0.822972520032581 2474 0.418283068307426 2 2 0 -6.7341212688345 LTS-011 chr7 103008368 103008376 9 * c(SLC26A5, PSMC2) NA 0 NA 0.419 1 NA NA NA NA NA LTS-011 chr7 103008377 103290882 282506 * c(SLC26A5, RELN, PSMC2) 0.296192273476794 3 0.0266645832519468 0.59297266974122 438 0.204500984253196 1 1 0 -7.42040955352527 LTS-011 chr7 103290883 103292070 1188 * RELN NA 0 NA 0.747 1 NA NA NA NA NA LTS-011 chr7 103292071 105890643 2598573 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, ATXN7L1, CDHR3, LHFPL3, ORC5, PUS7, KMT2E, RELN, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2) 0.233210575434978 17 0.121875991700339 0.754318006589624 1247 0.359348526273484 2 2 0 -6.80700254897727 LTS-011 chr7 105890644 105894952 4309 * NAMPT NA 0 NA 0.399394177566598 40 0.285520549128008 0 NA NA -5.76441028135715 LTS-011 chr7 105894953 106509658 614706 * c(NAMPT, CCDC71L, PIK3CG) 0.220568770100625 5 0.0252942681254074 1.09866032015556 190 0.414425009029573 3 3 0 -7.26127233144823 LTS-011 chr7 106509659 106509663 5 * PIK3CG NA 0 NA 0.838 1 NA NA NA NA NA LTS-011 chr7 106509664 113091242 6581579 * c(COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, DLD, SLC26A3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LSMEM1, IFRD1, LAMB1, LINC00998, DNAJB9, EIF3IP1, NRCAM, PNPLA8, SLC26A4, PIK3CG, GPR85, LRRN3, PRKAR2B, BCAP29, TMEM168, CBLL1, IMMP2L, DOCK4) 0.26150842876603 43 0.112355417120705 0.793609683593936 3079 0.414017972215487 2 2 0 -6.75885287610004 LTS-011 chr7 113091243 114333881 1242639 * c(MIR3666, PPP1R3A, FOXP2) 0.239635548598232 3 0.214628360971549 0.558656085863481 330 0.399862273010105 1 1 0 -6.86013883858217 LTS-011 chr7 114333882 114562239 228358 * MDFIC NA 0 NA 0.819 1 NA NA NA NA NA LTS-011 chr7 114562240 120988965 6426726 * c(FAM3C, CFTR, ASZ1, TFEC, TSPAN12, TES, MDFIC, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.262272654625288 77 0.100902848451868 0.814730093914859 2407 0.405886274066458 2 2 0 -6.74938167987434 LTS-011 chr7 120988966 120989049 84 * FAM3C NA 0 NA 0.53 1 NA NA NA NA NA LTS-011 chr7 120989050 120990397 1348 * FAM3C 0.261 1 NA 0.303854959331581 39 0.193224286339241 0 0 0 -5.76600238409153 LTS-011 chr7 120990398 122840113 1849716 * c(AASS, FAM3C, FEZF1-AS1, RNF133, RNF148, FEZF1, TAS2R16, PTPRZ1, SLC13A1, CADPS2) 0.250236767982317 12 0.129405956258402 0.690822043646903 919 0.378606090844596 2 2 0 -6.93338255479532 LTS-011 chr7 122840114 123092438 252325 * IQUB NA 0 NA 1.468 1 NA NA NA NA NA LTS-011 chr7 123092439 123389086 296648 * c(ASB15, IQUB, LMOD2, NDUFA5, WASL) 0.256077292497618 10 0.0620068096618786 0.913439828940487 503 0.550044675316545 2 2 0 -6.75793796192429 LTS-011 chr7 123389087 123389093 7 * WASL 0.312 1 NA 0.174 1 NA NA NA NA NA LTS-011 chr7 123389094 127013649 3624556 * c(C7orf77, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, SPAM1, MIR592, TMEM229A, WASL) 0.291677478058135 13 0.0453195208972797 0.644450793303518 495 0.262892155433166 1 1 0 -7.18324810675566 LTS-011 chr7 127013650 128118104 1104455 * c(MGC27345, ZNF800, SND1, SND1-IT1, HILPDA, FSCN3, IMPDH1, ARF5, LEP, PRRT4, MIR129-1, PAX4, RBM28, METTL2B, LRRC4, MIR593, GCC1) 0.28141931115965 12 0.0648730695397956 0.912848398231914 937 0.389629364556648 2 2 0 -6.96792193349666 LTS-011 chr7 128118105 128119239 1135 * METTL2B NA 0 NA 0.423 1 NA NA NA NA NA LTS-011 chr7 128119240 128371320 252081 * c(FAM71F2, LINC01000, METTL2B, FAM71F1) 0.230227740855751 11 0.0545212218898626 0.546069760799823 272 0.337461316448723 2 2 0 -6.98424794777091 LTS-011 chr7 128371321 128371434 114 * FAM71F1 NA 0 NA 0.683 1 NA NA NA NA NA LTS-011 chr7 128371435 129396658 1025224 * c(LOC100130705, SMKR1, RNA5SP244, FLNC, AHCYL2, TNPO3, TPI1P2, TSPAN33, IRF5, KCP, LOC407835, NRF1, STRIP2, OPN1SW, CCDC136, SMO, CALU, FAM71F1, ATP6V1F) 0.222533574781382 24 0.119778025373266 0.776373601656803 1662 0.342193192479377 2 2 0 -6.76659548409986 LTS-011 chr7 129396659 129396732 74 * NRF1 NA 0 NA 1.642 1 NA NA NA NA NA LTS-011 chr7 129396733 129592848 196116 * c(MIR182, MIR183, MIR96, NRF1, UBE2H) 0.16490224663708 2 0.212839141137151 1.22891902450341 161 0.613948771243318 4 4 0 -6.73307359330959 LTS-011 chr7 129592849 129658085 65237 * character(0) NA 0 NA 0.813 1 NA NA NA NA NA LTS-011 chr7 129658086 131808439 2150354 * c(TSGA13, CPA1, CPA2, KLF14, SSMEM1, KLHDC10, COPG2, MESTIT1, LINC-PINT, MIR29A, MIR29B1, MEST, MKLN1, MIR335, CPA4, ZC3HC1, PODXL, NA, TMEM209, PLXNA4, CPA5, CEP41) 0.265388564273599 28 0.0945705134308893 0.850631257764849 1474 0.432310756579285 2 2 0 -6.77295679155364 LTS-011 chr7 131808440 134552646 2744207 * c(LRGUK, AKR1B1, FLJ40288, AKR1B15, CHCHD3, AKR1B10, EXOC4, BPGM, CALD1, SLC35B4, PLXNA4) 0.270056420352338 16 0.0904469457748574 0.689464039505009 1145 0.30170874131025 2 2 0 -7.23365133008275 LTS-011 chr7 134552647 134576319 23673 * CALD1 NA 0 NA 1.879 1 NA NA NA NA NA LTS-011 chr7 134576320 135366430 790111 * c(NUP205, SLC13A4, WDR91, AGBL3, STRA8, CNOT4, TMEM140, C7orf73, C7orf49, CALD1) 0.238221638077295 18 0.0999257894574409 0.921462939331731 959 0.55494916943501 2 2 0 -6.76020899301008 LTS-011 chr7 135366431 135368864 2434 * c(SLC13A4, C7orf73) NA 0 NA 0.517 1 NA NA NA NA NA LTS-011 chr7 135368865 141445499 6076635 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, CLEC2L, FMC1, TMEM213, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, WEE2, ATP6V0A4, LUC7L2, MRPS33, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, TTC26, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L NA NA NA NA NA NA NA NA NA LTS-011 ) 0.25118373630419 73 0.0964246241531414 0.792818674351464 4472 0.410449903110198 2 2 0 -6.74911956041701 LTS-011 NA NA NA NA LTS-011 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.445 1 NA NA NA NA NA LTS-011 chr7 141450032 142111587 661556 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, NA, MGAM, MGAM2) 0.23504910377811 12 0.0843287218765548 0.579875435429 1033 0.247731763494316 1 1 0 -7.37799528836634 LTS-011 chr7 142111588 142111666 79 * character(0) NA 0 NA 0.723 1 NA NA NA NA NA LTS-011 chr7 142111667 142565401 453735 * c(MTRNR2L6, PRSS3P2, EPHB6, PRSS1) 0.282650774422086 58 0.105891058229419 0.889276151487995 480 0.633897580849038 2 2 0 -6.81088821215659 LTS-011 chr7 142565402 142960532 395131 * c(OR9A2, C7orf34, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.151437009452528 9 0.1203565305434 0.624379163980676 549 0.334727636399281 2 2 0 -7.224059384568 LTS-011 chr7 142960533 143003971 43439 * c(TMEM139, GSTK1, CASP2) NA 0 NA 1.17888037976444 182 0.551480377193497 4 NA NA -5.76455374332874 LTS-011 chr7 143003972 143295544 291573 * c(CLCN1, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX, CASP2, FAM131B) 0.275691655305075 14 0.0465029834798529 0.810497610796049 536 0.344914936593277 2 2 0 -6.97389561287285 LTS-011 chr7 143295545 143307635 12091 * character(0) NA 0 NA 0.21370471702137 71 0.348030959098391 0 NA NA -5.78757992508215 LTS-011 chr7 143307636 143318078 10443 * TCAF2 NA 0 NA 0.617 1 NA NA NA NA NA LTS-011 chr7 143318079 143533765 215687 * c(LOC154761, TCAF2, CTAGE6) 0.321030228291355 5 0.128629312366972 0.85687173976268 48 0.775909317835239 1 1 0 -6.7597752809767 LTS-011 chr7 143533766 143548494 14729 * c(LOC154761, TCAF1) NA 0 NA 0.369 1 NA NA NA NA NA LTS-011 chr7 143548495 143549969 1475 * TCAF1 NA 0 NA 0.296708003250248 53 0.169330741021417 0 NA NA -5.76709406987838 LTS-011 chr7 143549970 143550169 200 * TCAF1 NA 0 NA 0.447 1 NA NA NA NA NA LTS-011 chr7 143550170 143884193 334024 * c(OR2A14, OR6B1, OR2F2, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) NA 0 NA 0.538349111553213 201 0.214108499602398 1 NA NA -5.82494635738343 LTS-011 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.132 1 NA NA NA NA NA LTS-011 chr7 143928927 144074299 145373 * c(OR2A7, ARHGEF34P, ARHGEF5) 0.022 1 NA 0.248147119574032 149 0.408325571963143 0 0 0 -5.87959644256135 LTS-011 chr7 144074300 149941516 5867217 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, CNTNAP2, TPK1, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.253316661677566 55 0.104214360798467 0.74192303412478 2787 0.453427500726392 2 2 0 -6.87753380281702 LTS-011 chr7 149941517 149981927 40411 * ACTR3C 0 2 0 0.352018038881879 112 0.311478889778021 0 0 0 -Inf LTS-011 chr7 149981928 150706038 724111 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, KCNH2, GIMAP6, NOS3, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.280967023477226 46 0.0585883865097549 0.716005357379984 1133 0.328323173413682 2 2 0 -7.00852716701317 LTS-011 chr7 150706039 152132933 1426895 * c(WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, GBX1, ATG9B, WDR86, NOS3, PRKAG2, NUB1, CHPF2, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.284808819700768 39 0.065657990069138 0.897984441083239 2337 0.387664115525256 2 2 0 -6.99475788049632 LTS-011 chr7 152132934 152142260 9327 * c(FABP5P3, KMT2C) NA 0 NA 0.376 1 NA NA NA NA NA LTS-011 chr7 152142261 154685944 2543684 * c(LINC01003, DPP6, ACTR3B, XRCC2) 0.174471829382242 16 0.128580697747886 0.598100505362854 502 0.398647866302062 1 1 0 -7.47343353729241 LTS-011 chr7 154685945 157263526 2577582 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, UBE3C) 0.264562597264339 57 0.107980113387688 0.793099809724663 1911 0.388125828775383 2 2 0 -6.75793544907546 LTS-011 chr7 157263527 157318496 54970 * character(0) NA 0 NA 0.472 1 NA NA NA NA NA LTS-011 chr7 157318497 158423963 1105467 * c(LOC100506585, MIR5707, MIR153-2, PTPRN2, MIR595) 0.260299336313827 14 0.0542067673484928 0.586181067729341 315 0.742219313213478 2 2 0 -6.9031177062681 LTS-011 chr7 158423964 158423995 32 * character(0) NA 0 NA 1.102 1 NA NA NA NA NA LTS-011 chr7 158423996 158930775 506780 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) 0.311265062355702 14 0.0927096377032988 0.774927375991105 670 0.291202306950281 1 1 0 -6.95847531340196 LTS-011 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 0.659047981700488 19 0.182545964731533 1 NA NA -5.77648320706904 LTS-011 chr8 182757 182949 193 * ZNF596 0.217 1 NA 0.783009228944581 3 0.103 2 2 0 -5.7644258172326 LTS-011 chr8 182950 6378941 6195992 * c(LOC100287015, TDRP, ERICH1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.344843910076498 100 0.102192755085276 0.585071238839627 2095 0.282644195643083 1 1 0 -6.80911589757982 LTS-011 chr8 6378942 6385054 6113 * c(ANGPT2, MCPH1) NA 0 NA 1.274 1 NA NA NA NA NA LTS-011 chr8 6385055 6728116 343062 * c(MIR4659A, MIR4659B, GS1-24F4.2, DEFB1, ANGPT2, XKR5, AGPAT5, MCPH1) 0.327604476372327 10 0.125489441786949 0.812299134798531 236 0.401466188697314 1 1 0 -6.8408331217766 LTS-011 chr8 6728117 6728135 19 * DEFB1 NA 0 NA 0.474 1 NA NA NA NA NA LTS-011 chr8 6728136 7305471 577336 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.278536257763781 6 0.0374828849832382 0.39204209087687 74 0.184880116654676 1 1 0 -9.06471422521178 LTS-011 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.005 1 NA NA NA NA NA LTS-011 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.443726438460228 2 0.089095454429505 0.149409419160597 107 0.193544082217964 0 0 0 -10.4247350199055 LTS-011 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.497 1 NA NA NA NA NA LTS-011 chr8 8175295 9567731 1392437 * c(MIR4660, CLDN23, LOC157273, SGK223, PPP1R3B, TNKS, ERI1, MFHAS1) 0.341021725381395 25 0.0687662223285047 0.819339035814512 678 1.51134428797926 1 1 0 -6.79314338664804 LTS-011 chr8 9567732 9567736 5 * TNKS NA 0 NA 0.464 1 NA NA NA NA NA LTS-011 chr8 9567737 11644250 2076514 * c(MIR1322, LINC00599, TDH, PRSS55, C8orf74, NEIL2, GATA4, XKR6, MIR124-1, MSRA, PINX1, BLK, MTMR9, MIR597, MIR598, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TNKS, RP1L1) 0.32862056334497 80 0.118071898686748 0.548594545894762 1765 0.305282279495582 1 1 0 -6.86254539922668 LTS-011 chr8 11644251 11644262 12 * NEIL2 NA 0 NA 0.985 1 NA NA NA NA NA LTS-011 chr8 11644263 11711045 66783 * c(CTSB, FDFT1, NEIL2) 0.36737584884398 18 0.0584728583481147 0.886525238305688 219 0.417607683963269 3 2 1 -6.76934406005847 LTS-011 chr8 11711046 11711059 14 * CTSB 0.357 1 NA 0.488 1 NA NA NA NA NA LTS-011 chr8 11711060 17100451 5389392 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, DEFB109P1, DEFB130, FGF20, MICU3, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, ZDHHC2, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, LONRF1) 0.388396313152882 38 0.0787670639012194 0.566876057267772 1138 0.295112149598763 1 1 0 -7.24392590097378 LTS-011 chr8 17100452 17100495 44 * CNOT7 NA 0 NA 1.329 1 NA NA NA NA NA LTS-011 chr8 17100496 17105929 5434 * c(VPS37A, CNOT7) 0.407037622891448 2 0.103237590053236 1.17026965530763 48 0.374918279511758 4 2 2 -6.73431825048845 LTS-011 chr8 17105930 17123228 17299 * VPS37A NA 0 NA 0.69 1 NA NA NA NA NA LTS-011 chr8 17123229 22390563 5267335 * c(NAT2, LOC100128993, LZTS1-AS1, NPM2, LZTS1, VPS37A, LGI3, DMTN, FGL1, XPO7, PSD3, SLC39A14, GFRA2, LOC286114, LPL, MIR320A, ASAH1, PCM1, PDGFRL, ATP6V1B2, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, MTUS1, SH2D4A, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, NUDT18, REEP4, FGF17, NAT1, DOK2, MTMR7, PHYHIP) 0.339070921084603 130 0.0969610683603425 0.628617022956584 4000 0.428755984484176 1 1 0 -6.76638006341691 LTS-011 chr8 22390564 22396839 6276 * PPP3CC NA 0 NA 1.072 1 NA NA NA NA NA LTS-011 chr8 22396840 22462363 65524 * c(SORBS3, C8orf58, PPP3CC, CCAR2, PDLIM2) 0.33371497946328 8 0.0567360744399641 0.867114674596453 383 0.271937915930148 4 3 1 -6.80190880578787 LTS-011 chr8 22462364 22463190 827 * CCAR2 NA 0 NA 0.426 1 NA NA NA NA NA LTS-011 chr8 22463191 23430964 967774 * c(LOC100507156, PEBP4, EGR3, R3HCC1, RHOBTB2, LOC254896, LOC286059, LOC389641, LOXL2, SLC25A37, BIN3, CCAR2, BIN3-IT1, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.336667530880295 32 0.0827076504535608 0.667778146512577 1322 0.33077642000311 1 1 0 -6.79196484718166 LTS-011 chr8 23430965 25902497 2471533 * c(ADAM28, NKX2-6, CDCA2, ADAMDEC1, GNRH1, NEFM, NEFL, NKX3-1, KCTD9, PPP2R2A, EBF2, STC1, DOCK5, ADAM7) 0.308337723648755 39 0.142014587454714 0.543805665730422 1590 0.426018894206426 1 1 0 -6.83685822176679 LTS-011 chr8 25902498 25902567 70 * c(PPP2R2A, EBF2) NA 0 NA 0.805 1 NA NA NA NA NA LTS-011 chr8 25902568 26269982 367415 * c(PPP2R2A, EBF2, BNIP3L) 0.355900574783545 4 0.0847919021290752 0.758667776383297 206 0.559915581573888 1 1 0 -6.84010760387671 LTS-011 chr8 26269983 26366409 96427 * c(PNMA2, BNIP3L) NA 0 NA 0.400414833405473 91 0.14440417941655 0 NA NA -5.76447150858901 LTS-011 chr8 26366410 26366465 56 * PNMA2 NA 0 NA 0.619 1 NA NA NA NA NA LTS-011 chr8 26366466 26613957 247492 * c(PNMA2, ADRA1A, DPYSL2) 0.382 1 NA 0.741087629347052 153 0.249908097314879 2 2 0 -5.78491702661636 LTS-011 chr8 26613958 27101394 487437 * c(ADRA1A, STMN4) 0.379083505389046 7 0.071897413689493 0.376667478593754 194 0.148724850441438 0 0 0 -6.83849232439628 LTS-011 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 0.557 1 NA NA NA NA NA LTS-011 chr8 27142392 28197067 1054676 * c(MIR4287, MIR3622A, MIR3622B, CHRNA2, CLU, ESCO2, EPHX2, PTK2B, TRIM35, SCARA5, NUGGC, SCARA3, PNOC, ELP3, CCDC25, PBK) 0.310555701626744 28 0.130958023687951 0.608434081181447 1307 0.312188954005961 1 1 0 -6.74191105913587 LTS-011 chr8 28197068 28203073 6006 * PNOC NA 0 NA 2.582 1 NA NA NA NA NA LTS-011 chr8 28203074 28214402 11329 * ZNF395 NA 0 NA 1.18570447410801 101 0.538400484934976 4 NA NA -5.7644391289222 LTS-011 chr8 28214403 28217020 2618 * ZNF395 NA 0 NA 0.654 1 NA NA NA NA NA LTS-011 chr8 28217021 29927579 1710559 * c(MIR3148, MIR4288, MIR548O2, FBXO16, DUSP4, EXTL3, KIF13B, FAM183CP, SARAF, INTS9, ZNF395, LINC00589, HMBOX1, FZD3) 0.275648533774515 24 0.127553910171347 0.634527263972999 1237 0.308102270362233 1 1 0 -6.84944193059682 LTS-011 chr8 29927580 29931380 3801 * c(MIR548O2, SARAF) NA 0 NA 1.032 1 NA NA NA NA NA LTS-011 chr8 29931381 35093287 5161907 * c(RBPMS-AS1, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, UNC5D, LEPROTL1, GSR, GTF2E2, PURG, NRG1, SARAF, PPP2CB, TEX15, MBOAT4, WRN, DUSP26, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.330521086048277 25 0.123782739776863 1.05550251804134 1657 0.558580211243136 3 2 1 -6.84177541742744 LTS-011 chr8 35093288 37553391 2460104 * c(UNC5D, KCNU1, ZNF703) 0.308330259499028 9 0.226532619677118 0.686193605445773 504 0.331411510234779 1 1 0 -6.93787530027852 LTS-011 chr8 37553392 37553490 99 * ZNF703 NA 0 NA 1.066 1 NA NA NA NA NA LTS-011 chr8 37553491 38269514 716024 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, FGFR1, DDHD2, ADGRA2, LSM1, WHSC1L1, BRF2, STAR, LOC728024, ZNF703, RAB11FIP1, PLPP5, ASH2L, BAG4) 0.40634507523294 13 0.132964039865807 0.964319097022157 1731 0.467585144538725 3 2 1 -6.76133299979214 LTS-011 chr8 38269515 38271033 1519 * FGFR1 0 1 NA 1.13772261456054 29 0.850963425319518 4 4 0 -5.7644174903302 LTS-011 chr8 38271034 38811009 539976 * c(FGFR1, RNF5P1, C8orf86, PLEKHA2, TACC1) NA 0 NA 1.03473268793024 437 0.397704074523318 3 NA NA -5.76478981750381 LTS-011 chr8 38811010 38814731 3722 * PLEKHA2 NA 0 NA 1.931 1 NA NA NA NA NA LTS-011 chr8 38814732 39142479 327748 * c(HTRA4, ADAM32, PLEKHA2, TM2D2, ADAM9) 0.424 1 NA 1.78697289780805 496 0.709276958581932 7 7 0 -5.76488482950363 LTS-011 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.132 1 NA NA NA NA NA LTS-011 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.116490435358613 55 0.0294080201617118 0 NA NA -13.7422769377446 LTS-011 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.188 1 NA NA NA NA NA LTS-011 chr8 39442068 41561997 2119930 * c(GPAT4, NKX6-3, IDO2, ADAM2, ANK1, IDO1, GOLGA7, C8orf4, MIR486-1, SFRP1, ZMAT4, GINS4, ADAM18) 0.252995538828488 8 0.124698207112784 1.7000829150486 1202 0.719875614426102 6 5 1 -6.73681086264191 LTS-011 chr8 41561998 42196655 634658 * c(AP3M2, NKX6-3, ANK1, IKBKB, PLAT, POLB, KAT6A) 0.220985845654595 7 0.102067671296104 2.10142240598052 744 0.815914323983773 7 6 1 -6.74228710091198 LTS-011 chr8 42196656 42202462 5807 * POLB NA 0 NA 1.731 1 NA NA NA NA NA LTS-011 chr8 42202463 43057038 854576 * c(MIR4469, CHRNB3, SMIM19, HGSNAT, FNTA, DKK4, POLB, THAP1, SLC20A2, VDAC3, RNF170, POMK, HOOK3, CHRNA6) 0.137349035856098 5 0.176796493177891 1.670188050407 1001 0.991106120047094 6 6 0 -6.73764205447757 LTS-011 chr8 43057039 43212050 155012 * c(HGSNAT, POTEA) NA 0 NA 1.84898494456079 63 0.697888115907291 7 NA NA -5.76441023799808 LTS-011 chr8 47752736 48114462 361727 * c(LOC100287846, LINC00293) NA 0 NA 0.754843339435284 94 0.224833971637083 2 NA NA -5.7882330760118 LTS-011 chr8 48114463 48792125 677663 * c(CEBPD, SPIDR, PRKDC) 0 1 NA 1.26493184865223 449 0.717659894503469 4 4 0 -5.7650978322263 LTS-011 chr8 48792126 54967788 6175663 * c(LYPLA1, PCMTD1, PXDNL, NPBWR1, FAM150A, MCM4, C8orf22, OPRK1, ATP6V1H, SNTG1, PRKDC, SNAI2, TCEA1, UBE2V2, EFCAB1, RGS20, ST18, RB1CC1) 0.339660030882099 17 0.163695646569731 1.11007863936969 1974 0.540373084748334 3 2 1 -6.85883018632764 LTS-011 chr8 54967789 54974691 6903 * LYPLA1 NA 0 NA 2.386 1 NA NA NA NA NA LTS-011 chr8 54974692 55373447 398756 * c(LYPLA1, MRPL15, SOX17) NA 0 NA 1.99156608179907 107 0.761440831241386 8 NA NA -5.76485108939667 LTS-011 chr8 55373448 55533469 160022 * c(RP1, SOX17) NA 0 NA 0.801 1 NA NA NA NA NA LTS-011 chr8 55533470 59718259 4184790 * c(SBF1P1, LINC00968, LINC01606, XKR4, TMEM68, UBXN2B, CYP7A1, SDR16C5, LINC00588, SNORD54, LOC286177, LYN, MOS, PENK, PLAG1, IMPAD1, RP1, RPS20, SDCBP, CHCHD7, NSMAF, FAM110B, TGS1, TOX) 0.276202673397055 31 0.1486933049089 1.31204395419378 1807 0.616217400212944 5 4 1 -6.78742224932108 LTS-011 chr8 59718260 59727964 9705 * TOX 0 1 NA 0.94424787048462 55 0.431509567762648 3 3 0 -5.76459985841517 LTS-011 chr8 59727965 61769195 2041231 * c(CHD7, RAB2A, CA8, TOX) 0.433 1 NA 1.19323159799066 475 0.491289500505236 4 4 0 -5.76862668716371 LTS-011 chr8 61769196 74888679 13119484 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, MIR4470, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, C8orf34, ADHFE1, CRH, RDH10, MCMDC2, CLVS1, SBSPON, EYA1, RRS1, SULF1, TRAM1, SGK3, YTHDF3, C8orf46, PTTG3P, STAU2, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LOC401463, MIR124-2, ASPH, MYBL1, LACTB2, PDE7A, NA NA NA NA NA NA NA NA NA LTS-011 TMEM70, ARMC1, UBE2W, LINC00251, CHD7, C8orf44, CPA6, RPL7, PRDM14, SNHG6, SNORD87, UG0898H09, TCEB1, TERF1, TTPA, CSPP1, VCPIP1, PREX2, SLCO5A1, TRIM55, DNAJC5B, GGH, TRPA1, MSC, KCNB2, CYP7B1, MTFR1) 0.401581614173762 114 0.143729156700891 1.07194355560959 5761 0.575978755526978 3 2 1 -6.80178325317016 LTS-011 NA NA NA NA LTS-011 chr8 74888680 74890973 2294 * TMEM70 NA 0 NA 0.705 1 NA NA NA NA NA LTS-011 chr8 74890974 80578384 5687411 * c(ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, LOC101241902, STMN2, LY96, HNF4G, IL7, MIR2052HG, PI15, ZC2HC1A, GDAP1, TMEM70, PKIA, JPH1, PEX2, ZFHX4, CRISPLD1) 0.369234241111272 26 0.169899318602337 0.907199263702302 1305 0.444319319867134 2 1 1 -6.95514312949594 LTS-011 chr8 80578385 80676206 97822 * STMN2 NA 0 NA 1.434 1 NA NA NA NA NA LTS-011 chr8 80676207 81905604 1229398 * c(MIR5708, HEY1, MRPS28, PAG1, ZNF704, ZBTB10, TPD52) 0.445001717788758 12 0.036231160203573 1.21626447084498 895 0.509557614547743 4 2 2 -7.46709463709127 LTS-011 chr8 81905605 82168685 263081 * PAG1 NA 0 NA 0.845 1 NA NA NA NA NA LTS-011 chr8 82168686 82441857 273172 * c(FABP4, FABP5, PMP2, FABP9, FABP12) NA 0 NA 0.747814755811868 183 0.260988487662517 2 NA NA -5.78133780910803 LTS-011 chr8 82441858 82443410 1553 * FABP12 NA 0 NA 1.02 1 NA NA NA NA NA LTS-011 chr8 82443411 87386436 4943026 * c(REXO1L2P, WWP1, RALYL, SLC7A13, E2F5, ATP6V0D2, REXO1L1P, SLC10A5, IMPA1, CA13, C8orf59, SNX16, FABP12, CA1, CA2, CA3, ZFAND1, LRRCC1, PSKH2, CHMP4C) 0.397678689834774 35 0.131587252581763 0.996593316240978 1074 0.492700086146882 3 2 1 -6.74980660900921 LTS-011 chr8 87386437 87392982 6546 * WWP1 NA 0 NA 1.619 1 NA NA NA NA NA LTS-011 chr8 87392983 99105726 11712744 * c(C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, CPQ, WWP1, SLC26A7, FAM92A1, NDUFAF6, DCAF4L2, C8orf37, DECR1, CNBD1, TMEM64, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, C8orf87, RBM12B, GDF6, MATN2, MMP16, FLJ46284, NBN, MTERF3, RMDN1, OTUD6B, PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, NA NA NA NA NA NA NA NA NA LTS-011 SDC2, NECAB1, LINC00535, OSGIN2, UQCRB, CALB1, PLEKHF2, TSPYL5, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.387680317091063 87 0.144863963876247 1.15879178281756 5467 0.583960086177401 4 2 2 -6.80800790695078 LTS-011 NA NA NA NA LTS-011 chr8 99105727 100133646 1027920 * c(RIDA, POP1, OSR2, VPS13B, ERICH5, KCNS2, STK3, NIPAL2) 0.303 1 NA 1.22664252205396 585 0.542095918122997 4 4 0 -5.76441326500783 LTS-011 chr8 100133647 100286648 153002 * VPS13B NA 0 NA 1.3958395955341 59 0.52599710272473 5 NA NA -5.76467113023122 LTS-011 chr8 100286649 100287306 658 * VPS13B NA 0 NA 1.737 1 NA NA NA NA NA LTS-011 chr8 100287307 101190228 902922 * c(MIR875, COX6C, VPS13B, RGS22, FBXO43, POLR2K, SPAG1, MIR599) 0.162079184425186 4 0.10582690269177 2.28216179544097 617 0.851844711395452 10 9 1 -6.73837772245328 LTS-011 chr8 101190229 101196135 5907 * SPAG1 NA 0 NA 3.97 1 NA NA NA NA NA LTS-011 chr8 101196136 102214023 1017888 * c(MIR4471, ANKRD46, SNX31, RNF19A, PABPC1, FLJ42969, ZNF706, SPAG1, YWHAZ) 0.179195321664467 12 0.0320457769164958 2.94634423205683 546 2.62424488083387 9 8 1 -6.73996192945843 LTS-011 chr8 102214024 103662453 1448430 * c(MIR5680, ODF1, RRM2B, ZNF706, UBR5, KLF10, GRHL2, NACAP1, NCALD) 0.281972692284365 22 0.0811448920542353 1.91513295255433 820 0.817712919388824 8 6 2 -6.76271077109374 LTS-011 chr8 103662454 103839365 176912 * c(AZIN1, KLF10) 0.264972252994281 5 0.0388883015828668 3.36630310155543 96 1.44461545906217 13 10 3 -6.73366994437434 LTS-011 chr8 103839366 103839372 7 * AZIN1 NA 0 NA 1.876 1 NA NA NA NA NA LTS-011 chr8 103839373 108913308 5073936 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, AZIN1, ATP6V1C1, OXR1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.243252840033498 37 0.0751016028507431 1.96222448444857 1790 4.57758970097253 6 5 1 -6.74013614676264 LTS-011 chr8 108913309 110978106 2064798 * c(TMEM74, RSPO2, EIF3E, SYBU, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0 1 NA 1.15312020224 1153 0.582546917413992 4 4 0 -5.77887857530395 LTS-011 chr8 110978107 110978142 36 * character(0) 0.475 1 NA 0.909 1 NA NA NA NA NA LTS-011 chr8 110978143 110978540 398 * character(0) NA 0 NA 1.39000530311431 10 0.324256345778734 5 NA NA -5.76441248880435 LTS-011 chr8 110978541 114628043 3649503 * c(MIR2053, CSMD3, KCNV1) 0.343742834052826 5 0.208956454793816 0.898942251788933 499 0.405573897985148 2 1 1 -6.91030186919254 LTS-011 chr8 114628044 126163576 11535533 * c(FAM83A-AS1, MIR3610, ZHX1-C8orf76, MIR4663, LINC00536, COLEC10, RNF139, ZHX1, MAL2, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, SLC30A8, EXT1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, NDUFB9, NOV, TNFRSF11B, ENPP2, TRMT12, WDYHV1, SAMD12-AS1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, TRPS1, COL14A1, DSCC1, DERL1, TATDN1, UTP23, C8orf76, NA NA NA NA NA NA NA NA NA LTS-011 FAM83A, EIF3H, MED30, TBC1D31, MTSS1, KIAA0196) 0.39925256468653 80 0.1231816856918 1.20151833762415 4658 0.548353950548719 4 2 2 -6.74444562082686 LTS-011 NA NA NA NA LTS-011 chr8 126163577 126168094 4518 * NSMCE2 NA 0 NA 1.905 1 NA NA NA NA NA LTS-011 chr8 126168095 126448789 280695 * c(TRIB1, NSMCE2) 0.41973302635863 3 0.0240069434400411 1.60531910407922 79 0.931637113785131 6 3 3 -7.03214632036713 LTS-011 chr8 126448790 128428061 1979272 * c(LINC00861, PCAT1, TRIB1, FAM84B, POU5F1B, CASC8) 0.21 1 NA 1.58379802268885 171 0.656109423425236 6 6 0 -5.76811625076932 LTS-011 chr8 128428062 128432298 4237 * c(POU5F1B, CASC8) 0.140569780937693 4 0.117595351382045 1.92852477178473 74 1.26611243273896 5 5 0 -6.73320669224239 LTS-011 chr8 128432299 128748336 316038 * c(MYC, CASC8) NA 0 NA 7.549 1 NA NA NA NA NA LTS-011 chr8 128748337 129162433 414097 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MYC, PVT1) 0.12344720279825 3 0.0148436293854749 5.60244620529898 95 2.56017276165904 14 13 1 -6.74429035822239 LTS-011 chr8 129162434 129162475 42 * MIR1208 NA 0 NA 3.805 1 NA NA NA NA NA LTS-011 chr8 129162476 132936480 3774005 * c(ASAP1-IT2, MIR5194, ADCY8, EFR3A, ASAP1-IT1, ASAP1, FAM49B, GSDMC, LINC00977) 0.100878158714087 12 0.0513209597444447 3.60568425627038 565 1.87695473805215 17 16 1 -6.74045923211102 LTS-011 chr8 132936481 132947628 11148 * EFR3A NA 0 NA 2.054 1 NA NA NA NA NA LTS-011 chr8 132947629 133764263 816635 * c(HHLA1, TMEM71, EFR3A, LRRC6, KCNQ3, OC90, HPYR1) 0.206462627032364 30 0.104024759431169 1.91494938421622 683 1.25609839939846 8 7 1 -6.73818785505878 LTS-011 chr8 133764264 133811435 47172 * c(TMEM71, PHF20L1) 0.396 1 NA 1.89609032014503 35 1.09383820643125 7 7 0 -5.7644242426791 LTS-011 chr8 133811436 134049878 238443 * c(PHF20L1, SLA, TG) 0.267845620257708 27 0.0676594034247633 2.0515912897547 575 0.829052333924706 9 7 2 -6.73669344522932 LTS-011 chr8 134049879 134052353 2475 * c(SLA, TG) NA 0 NA 1.57728541137032 27 0.53526184448851 6 NA NA -5.76441875274693 LTS-011 chr8 134052354 134057174 4821 * c(SLA, TG) NA 0 NA 5.131 1 NA NA NA NA NA LTS-011 chr8 134057175 134239770 182596 * c(SLA, TG, WISP1) 0.095 1 NA 4.61342280555492 125 1.89884475718026 20 20 0 -5.76441661007758 LTS-011 chr8 134239771 136659842 2420072 * c(NDRG1, KHDRBS3, LINC01591, MIR30B, MIR30D, ZFAT, ZFAT-AS1, ST3GAL1, WISP1) 0.0936308293912935 22 0.0179884522842966 5.50000203247879 609 3.17341561906987 19 18 1 -6.7424581676875 LTS-011 chr8 137877286 139626021 1748736 * c(COL22A1, FAM135B) 0.234390849277177 7 0.232302040660942 0.855142252100256 275 0.495713969022735 2 2 0 -6.74514005835087 LTS-011 chr8 139626022 139768085 142064 * COL22A1 0.442 1 NA 0.848356234541189 187 0.255749769103565 2 2 0 -5.76672480902011 LTS-011 chr8 139768086 140743305 975220 * c(COL22A1, KCNK9, TRAPPC9) 0.421 1 NA 0.815445531387876 150 0.367206547160321 2 2 0 -5.76443917490776 LTS-011 chr8 140743306 140743316 11 * TRAPPC9 NA 0 NA 1.233 1 NA NA NA NA NA LTS-011 chr8 140743317 142459707 1716391 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.43304720790586 49 0.101800646356688 1.22237910746448 1305 0.487717277492778 4 2 2 -6.78717693392407 LTS-011 chr8 142459708 143695759 1236052 * c(MIR4472-1, TSNARE1, ARC, MROH5, ADGRB1, LINC00051) 0.411667770577052 30 0.0973698010726095 0.831774909221843 488 0.419641682791693 2 1 1 -6.74062915119564 LTS-011 chr8 143695760 143696645 886 * ARC NA 0 NA 1.539 1 NA NA NA NA NA LTS-011 chr8 143696646 143954773 258128 * c(LOC100288181, LYPD2, CYP11B1, GML, THEM6, LY6K, SLURP1, LYNX1, PSCA, LY6D, JRK) 0.385377830762053 15 0.15714461037983 1.12113786266431 465 0.672783669167662 3 2 1 -6.73653503127741 LTS-011 chr8 143954774 144032148 77375 * c(CYP11B1, CYP11B2) 0.410676106061647 16 0.122554188694906 0.69430271334251 179 0.701971147016377 2 1 1 -6.73815305990194 LTS-011 chr8 144032149 144063664 31516 * LOC100133669 NA 0 NA 1.254 1 NA NA NA NA NA LTS-011 chr8 144063665 144590107 526443 * c(CDC42P3, LOC100133669, RHPN1, TOP1MT, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6E, LY6H, RHPN1-AS1, ZNF696) 0.452988800496662 34 0.0361447994055047 1.01274008153517 681 0.409695192476716 4 2 2 -7.79549306978877 LTS-011 chr8 144590108 144618465 28358 * ZC3H3 NA 0 NA 1.757 1 NA NA NA NA NA LTS-011 chr8 144618466 144698418 79953 * c(EEF1D, ZC3H3, MROH6, PYCRL, TSTA3, GSDMD, TIGD5, NAPRT) 0.394563478002558 9 0.14803781423827 1.34422682061694 541 0.554975090027567 5 3 2 -6.73370634664853 LTS-011 chr8 144698419 144940226 241808 * c(MIR937, FAM83H-AS1, CCDC166, MIR4664, MAPK15, PUF60, SCRIB, ZNF707, BREA2, FAM83H, NRBP2, TSTA3, EPPK1, ZNF623) 0.153887854880198 5 0.26400227271749 1.07999196129065 827 0.518547219969087 4 4 0 -6.74266072952774 LTS-011 chr8 144940227 144940475 249 * EPPK1 NA 0 NA 0.678 1 NA NA NA NA NA LTS-011 chr8 144940476 145004752 64277 * c(PLEC, EPPK1) 0.460396377276251 7 0.0267875237484063 0.856168565558022 436 0.274428256275579 2 1 1 -8.72084444959057 LTS-011 chr8 145004753 145005702 950 * PLEC NA 0 NA 1.923 1 NA NA NA NA NA LTS-011 chr8 145005703 145025148 19446 * c(PLEC, MIR661) NA 0 NA 1.56322193369104 145 0.413880311863095 6 NA NA -5.76457864425645 LTS-011 chr8 145025149 145027825 2677 * PLEC NA 0 NA 0.914 1 NA NA NA NA NA LTS-011 chr8 145027826 145634684 606859 * c(MIR939, MIR1234, CYC1, ADCK5, BOP1, FBXL6, OPLAH, GRINA, CPSF1, HSF1, WDR97, TMEM249, SPATC1, HGH1, PLEC, EXOSC4, SCX, MROH1, SLC52A2, SHARPIN, SCRT1, MAF1, PARP10, DGAT1, GPAA1) 0.446824096224899 36 0.0481794924429834 1.0612347101103 1441 0.415586118015115 4 2 2 -7.24967950468378 LTS-011 chr8 145634685 145637811 3127 * c(CPSF1, SLC39A4) NA 0 NA 2.183 1 NA NA NA NA NA LTS-011 chr8 145637812 146231140 593329 * c(MFSD3, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, ZNF517, C8orf82, LRRC24, TONSL, CYHR1, VPS28, SLC39A4, ZNF250, RPL8, ZNF7, ZNF16, ARHGAP39, ZNF34, PPP1R16A, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.428693823292201 50 0.0955269146815254 1.22061717121513 2040 0.512700714686371 4 2 2 -6.77835329768524 LTS-011 chr8 146231141 146280905 49765 * c(ZNF252P-AS1, C8orf33) NA 0 NA 1.37775679741625 55 0.363543598689549 5 NA NA -5.76479148395282 LTS-011 chr9 14732 214706 199975 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.454 1 NA 0.926322752375848 43 0.826862031714232 3 3 0 -5.76606295077881 LTS-011 chr9 214707 6748523 6533817 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, PUM3) 0.429777223857448 78 0.098248891369545 0.787345451426234 3690 0.37167294450081 2 1 1 -6.80920403460485 LTS-011 chr9 6748524 6814885 66362 * KDM4C 0 1 NA 0.707420369448063 22 0.658929889720522 2 2 0 -5.76619475504941 LTS-011 chr9 6814886 14081833 7266948 * c(LINC00583, KDM4C, LURAP1L, LINC01235, PTPRD, TYRP1, MPDZ, TMEM261) 0.333597431534419 14 0.193807483496744 0.782700389419407 950 0.351748221146614 2 1 1 -6.85912448710958 LTS-011 chr9 14081834 14081877 44 * NFIB 0 1 NA 3.395 1 NA NA NA NA NA LTS-011 chr9 14081878 14314519 232642 * NFIB 0.498 1 NA 1.191668664093 225 0.671448501228193 4 4 0 -5.76469151545104 LTS-011 chr9 14314520 14398521 84002 * NFIB NA 0 NA 1.61804254411438 6 0.689031494200374 6 NA NA -5.76443489712463 LTS-011 chr9 14398522 21351324 6952803 * c(C9orf92, MIR3152, MIR4473, MIR4474, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, CCDC171, SLC24A2, ZDHHC21, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MLLT3, NFIB, BNC2, HAUS6, CNTLN, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.430901777792061 50 0.0785860661689995 0.765354248410488 3387 0.366105970643269 2 1 1 -6.92411497553176 LTS-011 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.417 1 NA NA NA NA NA LTS-011 chr9 21367330 21441170 73841 * c(IFNA1, IFNA2, IFNA8, IFNA13) NA 0 NA 0.384004446238854 76 0.234188106654129 0 NA NA -5.76552443534585 LTS-011 chr9 21441171 25678640 4237470 * c(CDKN2B-AS1, IZUMO3, CDKN2A, CDKN2B, ELAVL2, TUSC1, IFNE, IFNA1, MIR31, LINC01239, MTAP, CDKN2A-AS1, MIR31HG, DMRTA1) 0.443879792817137 21 0.0404680355930691 0.820229917209744 635 0.394061615209014 2 1 1 -7.30751504987126 LTS-011 chr9 25678641 26114367 435727 * c(LOC100506422, TUSC1) 0 1 NA 1.18217463073026 15 1.28881439426208 4 4 0 -5.76463915545143 LTS-011 chr9 26114368 27220066 1105699 * c(LOC100506422, LRRC19, TEK, CAAP1, IFT74, PLAA) 0.260703648855522 9 0.209436015156048 0.792849015347981 519 0.374072414599892 2 2 0 -6.73922214225257 LTS-011 chr9 27220067 27229141 9075 * TEK 0.369 1 NA 0.9119984824199 8 0.21232652583092 3 3 0 -5.76594211792076 LTS-011 chr9 27229142 32629615 5400474 * c(MIR876, MIR873, TOPORS-AS1, TOPORS, TAF1L, LINC00032, LINGO2, C9orf72, DDX58, LINC01242, NDUFB6, ACO1, EQTN, IFNK, TEK, MOB3B) 0.437985144355653 24 0.0551740329597491 0.889193786380775 970 0.434500382078452 2 1 1 -7.106817625193 LTS-011 chr9 32629616 32629883 268 * TAF1L NA 0 NA 0.56 1 NA NA NA NA NA LTS-011 chr9 32629884 32973717 343834 * c(TAF1L, TMEM215, APTX) 0.481387613049971 2 0.029698484809835 0.490227876377359 191 0.136808304196041 0 0 0 -9.80672161295957 LTS-011 chr9 32973718 32974355 638 * APTX NA 0 NA 1.177 1 NA NA NA NA NA LTS-011 chr9 32974356 33524740 550385 * c(B4GALT1, SPINK4, DNAJA1, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, CHMP5, APTX, SMU1, BAG1, NOL6) 0.334252837435978 12 0.19631350545554 0.902264145794803 908 0.433404286162023 3 2 1 -6.79330480962424 LTS-011 chr9 33524741 33528735 3995 * ANKRD18B NA 0 NA 0.654 1 NA NA NA NA NA LTS-011 chr9 33528736 33676493 147758 * c(PTENP1, ANXA2P2, ANKRD18B) 0.45571457872949 10 0.0577374324949691 0.52693018200188 191 0.366742652572293 0 0 0 -7.25270321816439 LTS-011 chr9 33676494 33750770 74277 * c(PTENP1, PRSS3) NA 0 NA 0.656 1 NA NA NA NA NA LTS-011 chr9 33750771 34723913 973143 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, PRSS3, KIAA1161, CCL19, CCL21, C9orf24) 0.372245630728462 35 0.122002362561502 0.829261911193507 1557 0.408166522698643 2 1 1 -6.77066864061174 LTS-011 chr9 34723914 34726346 2433 * FAM205A 0.287383178749135 2 0.0318198051533946 0.251837655182411 70 0.249782797986115 5 4 1 -6.81306448023273 LTS-011 chr9 34726347 34833377 107031 * c(FAM205A, FAM205BP) 0.337927764992454 4 0.236412774612541 0.578643322777167 88 0.567173056246021 1 1 0 -6.73487966934274 LTS-011 chr9 34833378 34835149 1772 * FAM205BP 0.422 1 NA 0.301642452851356 55 0.270357436432482 0 0 0 -5.76553794161849 LTS-011 chr9 34835150 34979967 144818 * c(PHF24, FAM205BP) 0.418187846915318 3 0.0461302503786832 0.588886274230299 125 0.273879528024582 2 1 1 -6.92131665830428 LTS-011 chr9 34979968 35236608 256641 * c(UNC13B, C9orf131, FANCG, PHF24, DNAJB5, STOML2, VCP, FAM214B, PIGO) 0.438597870265389 18 0.115731715900869 1.00746597448348 746 0.535035649462135 4 2 2 -6.81233279232367 LTS-011 chr9 35236609 35605590 368982 * c(UNC13B, ATP8B5P, TESK1, FAM166B, RUSC2) 0.240535561068369 4 0.245985094399369 0.65157704090642 397 0.267015703826798 1 1 0 -6.8215932818734 LTS-011 chr9 35605591 35605707 117 * TESK1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-011 chr9 35605708 36148722 543015 * c(MIR4667, CREB3, GLIPR2, LINC00961, CCDC107, SPAG8, SIT1, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, CA9, RECK, HINT2, ARHGEF39, LINC00950, CD72, RGP1) 0.446302960564739 42 0.0489643972200409 0.898755252172652 1739 0.366033648531466 2 1 1 -7.20534853631499 LTS-011 chr9 36148723 36163929 15207 * GLIPR2 NA 0 NA 1.14379319674912 46 0.376843877769774 4 NA NA -5.76473536685905 LTS-011 chr9 36163930 36169340 5411 * character(0) NA 0 NA 0.255 1 NA NA NA NA NA LTS-011 chr9 36169341 36212145 42805 * c(CLTA, CCIN) 0 1 NA 0.75055642523665 91 0.36054669959455 2 2 0 -5.7656848311561 LTS-011 chr9 36212146 37429661 1217516 * c(GNE, EBLN3P, MIR4540, MIR4475, MIR4476, RNF38, PAX5, ZCCHC7, GRHPR, MELK) 0.274620044802671 9 0.214703542381376 0.715630661325205 725 0.406327055676224 2 2 0 -6.81556306601972 LTS-011 chr9 37429662 37429814 153 * GRHPR 0.475 1 NA 1.05863956578537 7 0.186074741767413 3 3 0 -5.76441363550241 LTS-011 chr9 37429815 37919177 489363 * c(TRMT10B, FRMPD1, FBXO10, TOMM5, EXOSC3, POLR1E, SHB, DCAF10, SLC25A51, GRHPR, ZBTB5) 0.425816306569051 9 0.0425179700571156 0.768585598009562 743 0.708439233594922 2 1 1 -6.91225470167993 LTS-011 chr9 37919178 38398675 479498 * c(ALDH1B1, SHB) 0.448083611954829 2 0.0155563491861041 1.02488607228688 127 0.381210832955472 4 2 2 -9.80810879994454 LTS-011 chr9 38398676 38411346 12671 * IGFBPL1 NA 0 NA 0.449 1 NA NA NA NA NA LTS-011 chr9 38411347 40503123 2091777 * c(FAM95C, FAM201A, ANKRD18A, IGFBPL1, FAM74A1, ZNF658B, NA, NA, CNTNAP3) 0.451850865971181 9 0.0444834551016193 0.489596439304927 323 0.243399664915441 0 0 0 -8.17512325137365 LTS-011 chr9 40503124 43816026 3312903 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.54263943184296 15 0.137498294361715 1 NA NA -6.83033895163713 LTS-011 chr9 43816027 43816599 573 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.071 1 NA NA NA NA NA LTS-011 chr9 43816600 44175697 359098 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.215452634376133 39 0.294644601673858 0 NA NA -6.58123995817818 LTS-011 chr9 65602571 66457127 854557 * LOC286297 0.324 1 NA 1.39748416467218 3 0.830121075506459 5 5 0 -5.7649472772614 LTS-011 chr9 66457128 66499292 42165 * c(LOC286297, PTGER4P2-CDK2AP2P2) 0.231681604322285 11 0.0926110144637235 1.6977608489673 25 0.975995645482089 11 9 2 -6.73878794679573 LTS-011 chr9 66499293 68372357 1873065 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.345 1 NA 1.16599487735658 7 0.152094112468626 4 4 0 -5.89263073439493 LTS-011 chr9 68372358 84530373 16158016 * c(FRG1HP, LOC100133920, VPS13A-AS1, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, TMEM252, ALDH1A1, SMC5, VPS13A, TMEM2, FXN, MAMDC2, GCNT1, OSTF1, GNAQ, FOXD4L3, PSAT1, ANXA1, APBA1, SPATA31D5P, PTAR1, MIR204, LOC440896, FOXB2, C9orf135-AS1, PCA3, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, PRKACG, PGM5-AS1, PGM5P2, RORB, FRG1JP, CBWD6, RPSAP9, FOXD4L6, NA NA NA NA NA NA NA NA NA LTS-011 FOXD4L5, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, TRPM3, PIP5K1B, CEP78, FAM189A2, TJP2, GDA, GNA14) 0.424810967878045 112 0.0967920707235616 0.81850127650873 5663 0.398138816471208 2 1 1 -6.76760156734947 LTS-011 NA NA NA NA LTS-011 chr9 84530374 84530454 81 * SPATA31D5P NA 0 NA 0.497 1 NA NA NA NA NA LTS-011 chr9 84530455 85605423 1074969 * c(RASEF, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) 0.439226437106833 3 0.0486929152957594 0.521315824622802 224 0.237533229577985 0 0 0 -7.78265042162422 LTS-011 chr9 85605424 85607812 2389 * RASEF NA 0 NA 0.821 1 NA NA NA NA NA LTS-011 chr9 85607813 90499594 4891782 * c(GAS1RR, CTSL, CTSLP8, RASEF, DAPK1, AGTPBP1, FRMD3, GAS1, SPATA31E1, UBQLN1, HNRNPK, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, MIR7-1, IDNK, LOC440173, NTRK2, LOC494127, GOLM1, KIF27, NAA35, SLC28A3, ZCCHC6, RMI1, GKAP1, ISCA1, C9orf64) 0.358829783951053 18 0.1949646943068 0.778580756549354 2502 0.411873787653023 2 1 1 -6.79560712099135 LTS-011 chr9 90499595 90747134 247540 * c(CDK20, SPATA31E1, SPATA31C1, SPATA31C2) 0.437208253736164 4 0.0429059047995339 0.573654092066942 231 0.294306918763 2 1 1 -7.3069687959188 LTS-011 chr9 90747135 90747464 330 * SPATA31C2 NA 0 NA 0.937 1 NA NA NA NA NA LTS-011 chr9 90747465 97061995 6314531 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, NXNL2, MIRLET7DHG, FAM120AOS, LINC00475, ZNF169, ECM2, S1PR3, SUSD3, FAM120A, BICD2, C9orf47, LOC286238, MIR4290HG, IARS, LINC01501, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, C9orf129, NFIL3, NINJ1, ROR2, OMD, OGN, PHF2, SHC3, NA NA NA NA NA NA NA NA NA LTS-011 DIRAS2, ASPN, AUH, NOL8, BARX1, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZNF484, CARD19, FGD3) 0.419470860980214 56 0.12217509257927 0.818897064181864 3780 0.372856834442423 2 1 1 -6.74604707246183 LTS-011 NA NA NA NA LTS-011 chr9 97061996 97200847 138852 * c(LOC100132077, ZNF169, NUTM2F, MFSD14B) NA 0 NA 0.555861875862153 126 3.39992413604438 1 NA NA -5.76446375684586 LTS-011 chr9 97200848 99064425 1863578 * c(LINC00476, LINC00092, MIR2278, MIR3074, LOC100507346, LOC158434, LOC158435, FANCC, FBP1, HSD17B3, ERCC6L2, MIR23B, PTCH1, MFSD14B, C9orf3, FBP2) 0.446474915901264 22 0.0382256911409521 0.866511173192134 1108 0.752063279934444 2 1 1 -7.44958058720577 LTS-011 chr9 99064426 99304215 239790 * c(SLC35D2, ZNF367, HABP4, HSD17B3, CDC14B) 0 1 NA 0.782900345058473 369 0.320762261825492 2 2 0 -5.76644380286157 LTS-011 chr9 99304216 99637864 333649 * c(LOC100132781, ZNF782, AAED1, ZNF510, LOC441455, CDC14B) 0.137294465452244 3 0.261539671942901 0.782927462058251 308 0.386328289110281 2 2 0 -6.8361930381556 LTS-011 chr9 99637865 99690566 52702 * LOC441454 NA 0 NA 0.397 1 NA NA NA NA NA LTS-011 chr9 99690567 99961959 271393 * c(CTSV, GAS2L1P2, NUTM2G, MFSD14C) 0.135253216562196 2 0.147785317267988 0.514053677482833 223 0.376438414368868 2 2 0 -7.28296504841611 LTS-011 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 0.755 1 NA NA NA NA NA LTS-011 chr9 100041691 100088971 47281 * c(CCDC180, LOC100499484, LOC100499484-C9ORF174) 0.339717409836459 7 0.154422580386851 0.763320502561066 137 0.44805170445229 1 1 0 -6.74501240760547 LTS-011 chr9 100088972 100092515 3544 * c(CCDC180, LOC100499484-C9ORF174) 0.403 1 NA 0.668992138341435 11 0.280984794153446 1 1 0 -5.76467399254589 LTS-011 chr9 100092516 104355252 4262737 * c(CCDC180, MSANTD3-TMEFF1, NAMA, ANP32B, SEC61B, GRIN3A, COL15A1, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.39564482743881 66 0.160388871839009 0.799073034583338 3581 0.384594473712651 2 1 1 -6.73948906147284 LTS-011 chr9 104355253 105968644 1613392 * c(GRIN3A, CYLC2, PPP3R2) 0.323813782152103 2 0.0883883476483184 0.572340200092611 227 0.352626576088159 1 1 0 -6.75876940351039 LTS-011 chr9 106857568 106903670 46103 * SMC2 0.424730370486432 15 0.125236271940376 0.882322871063976 174 0.354139710128758 2 1 1 -6.75358418183093 LTS-011 chr9 106903671 107266448 362778 * SMC2 NA 0 NA 0.365 1 NA NA NA NA NA LTS-011 chr9 107266449 107457836 191388 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.434158376012831 24 0.0482670710208061 0.526968130295815 224 0.249911399378335 0 0 0 -7.11892715985141 LTS-011 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.46 1 NA NA NA NA NA LTS-011 chr9 107509996 113018842 5508847 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, ABCA1, FKTN, SLC44A1, TMEM245, FRRS1L, NIPSNAP3A, NA, C9orf152, MIR32, PALM2-AKAP2, EPB41L4B, FAM206A, TMEM38B, NIPSNAP3B, PTPN3, ZNF462, RAD23B, TAL2, TXN, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.404117005382056 70 0.121761583554969 0.868282840158801 3255 2.69455731035761 2 1 1 -6.7351001546092 LTS-011 chr9 113018843 113065765 46923 * TXN NA 0 NA 0.575 1 NA NA NA NA NA LTS-011 chr9 113065766 114659225 1593460 * c(ZNF483, C9orf84, LPAR1, PTGR1, KIAA0368, TXNDC8, OR2K2, GNG10, MUSK, DNAJC25, DNAJC25-GNG10, LRRC37A5P, UGCG, SVEP1) 0.418003002261647 37 0.111715808737716 0.683479253163838 1472 0.308336792367365 2 1 1 -7.03461352840128 LTS-011 chr9 114659226 114659403 178 * UGCG NA 0 NA 1.658 1 NA NA NA NA NA LTS-011 chr9 114659404 114840889 181486 * c(MIR3134, MIR4668, SUSD1, UGCG) 0.476354246769879 3 0.00299999999999997 1.26333322057946 141 0.508558471212849 4 2 2 -21.1623150226847 LTS-011 chr9 114840890 117074807 2233918 * c(FAM225B, MIR3134, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, SUSD1, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.392107885956475 71 0.146439589319007 0.835050852241733 2977 0.408475025264597 2 1 1 -6.74153609353186 LTS-011 chr9 117074808 117085362 10555 * ORM1 NA 0 NA 0.024 1 NA NA NA NA NA LTS-011 chr9 117085363 117092739 7377 * c(ORM1, ORM2) 0.41699224837847 5 0.0767020208338737 0.222427378264997 67 0.310843930119126 0 0 0 -6.76954729675314 LTS-011 chr9 117092740 123939806 6847067 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, CNTRL, BRINP1, MEGF9, TMEM268, TRIM32, ASTN2, PSMD5-AS1, WHRN, PHF19, FBXW2, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, PSMD5, LINC00474, TLR4, TRAF1, C5, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.435728730674648 41 0.104441733084798 0.822355171307642 2917 0.344871728201816 2 1 1 -6.79787537020578 LTS-011 chr9 123939807 123939812 6 * CNTRL NA 0 NA 1.084 1 NA NA NA NA NA LTS-011 chr9 123939813 124543913 604101 * c(CNTRL, DAB2IP, STOM, GGTA1P, GSN, RAB14) 0.44775074315013 16 0.0401876846807576 1.07181346126869 566 0.430203074779681 4 2 2 -7.45100932674342 LTS-011 chr9 124543914 125239337 695424 * c(MIR4478, DAB2IP, TTLL11, MORN5, LHX6, OR1J1, NDUFA8, PTGS1, MRRF, RBM18) 0.420411562721855 14 0.127492900039334 0.834821843587487 639 0.40921277770102 2 1 1 -6.74673473996315 LTS-011 chr9 125239338 125563162 323825 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1) 0.377708050149844 16 0.160083715078497 0.507221334357631 375 0.432965179088377 0 0 0 -6.80720622464906 LTS-011 chr9 125563163 130494791 4931629 * c(LOC100129034, MIR181A2HG, MIR3911, RABEPK, ZBTB6, NEK6, RPL35, PTRH1, TTC16, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, SNORA65, TOR2A, GOLGA1, GPR21, CRB2, SCAI, CFAP157, SLC2A8, HSPA5, ADGRD2, OR1K1, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PDCL, PBX3, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, RPL12, NRON, FAM129B, STXBP1, SNORD90, MIR601, ZNF79, MAPKAP1, MIR600HG, ARPC5L, GARNL3, NA NA NA NA NA NA NA NA NA LTS-011 MVB12B, LRSAM1, LHX2, RALGPS1) 0.415617328936854 94 0.131284738514872 0.816428474845059 5018 0.376574738894064 2 1 1 -6.7394470424451 LTS-011 NA NA NA NA LTS-011 chr9 130494792 130495794 1003 * TOR2A NA 0 NA 0.812107094463274 17 0.164691087833449 2 NA NA -5.76441018555833 LTS-011 chr9 130495795 130496511 717 * TOR2A NA 0 NA 1.026 1 NA NA NA NA NA LTS-011 chr9 130496512 130509399 12888 * c(SH2D3C, TOR2A) 0 1 NA 1.1006961224102 59 0.901067720765219 3 3 0 -5.7644642970374 LTS-011 chr9 130509400 130928739 419340 * c(SLC25A25-AS1, SH2D3C, MIR3960, MIR4672, CDK9, SLC25A25, PIP5KL1, ENG, AK1, NAIF1, FPGS, CIZ1, ST6GALNAC4, ST6GALNAC6, PTGES2-AS1, LCN2, FAM102A, C9orf16, PTGES2, DPM2) 0.302343873004446 3 0.217584466357321 1.05184952579178 1060 0.376927432911743 4 3 1 -6.7838815289218 LTS-011 chr9 130928740 130928964 225 * CIZ1 NA 0 NA 0.736 1 NA NA NA NA NA LTS-011 chr9 130928965 131515547 586583 * c(MIR3154, LOC100506100, MIR219B, ZER1, SLC27A4, DNM1, CIZ1, TRUB2, GLE1, GOLGA2, PKN3, SWI5, MIR199B, MIR219A2, ODF2, COQ4, CERCAM, SET, SPTAN1, URM1, ZDHHC12, WDR34) 0.287243496962476 6 0.213808715132631 0.844339894547209 1726 0.425153914434613 2 2 0 -6.75839872515242 LTS-011 chr9 131515548 131568363 52816 * c(ZER1, TBC1D13) 0.5 1 NA 0.931583828679678 71 0.238169660374147 3 3 0 -5.76907310692059 LTS-011 chr9 131568364 131870270 301907 * c(CRAT, ENDOG, DOLK, NUP188, PHYHD1, SPOUT1, TBC1D13, LRRC8A, SH3GLB2, DOLPP1, MIGA2, KYAT1) 0.487909521740929 2 0.0014142135623731 0.809490137588148 1062 0.323196821571947 2 1 1 -26.5243798192813 LTS-011 chr9 131870271 133260274 1390004 * c(LINC00963, USP20, CRAT, ASB6, TOR1A, FNBP1, NCS1, TOR1B, NTMT1, C9orf50, IER5L, C9orf106, PRRX2, C9orf78, PTPA, GPR107, PTGES) 0.398008471281158 15 0.16168523212005 1.00271165584337 1378 0.60066065845919 3 2 1 -6.74050328417331 LTS-011 chr9 133260275 133260920 646 * character(0) NA 0 NA 0.592 1 NA NA NA NA NA LTS-011 chr9 133260921 135119584 1858664 * c(LOC100272217, LAMC3, POMT1, EXOSC2, ABL1, SNORD62A, FAM78A, RAPGEF1, QRFP, ASS1, PRDM12, NUP214, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, MED27) 0.432263724295217 40 0.108609521705641 0.80000538234948 2416 0.372487646770411 2 1 1 -6.78038534903436 LTS-011 chr9 135119585 135164012 44428 * SETX 0 1 NA 0.761956364350702 135 0.432463452700345 2 2 0 -5.76501705041793 LTS-011 chr9 135164013 135567493 403481 * c(SETX, CFAP77, BARHL1, DDX31, TTF1, GTF3C4) 0.266790270274168 9 0.213004368760622 0.738668376047021 673 1.09580199992519 2 2 0 -6.74081569484973 LTS-011 chr9 135567494 135569919 2426 * character(0) 0.461 1 NA 0.624502195053503 55 0.220417690417893 1 1 0 -5.76443740904113 LTS-011 chr9 135569920 137709774 2139855 * c(RNU6ATAC, MIR4669, CEL, CELP, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, AK8, DBH, STKLD1, SARDH, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, TMEM8C, REXO4, RALGDS, RPL7A, RXRA, FAM163B, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, VAV2, BRD3, GFI1B, GTF3C5, ADAMTSL2) 0.44578331771324 81 0.0698789385250142 0.801613668199494 2958 0.358879827780695 2 1 1 -6.95836468560652 LTS-011 chr9 137709775 137710513 739 * COL5A1 NA 0 NA 0.346 1 NA NA NA NA NA LTS-011 chr9 137710514 138236300 525787 * c(MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, COL5A1, C9orf62, FCN1, FCN2, LOC401557) 0.44689549093197 11 0.046676059660757 0.556458660597966 399 0.208500591984105 0 0 0 -7.94527800312206 LTS-011 chr9 138236301 138236305 5 * C9orf62 NA 0 NA 1.054 1 NA NA NA NA NA LTS-011 chr9 138236306 138415245 178940 * c(PPP1R26-AS1, C9orf116, C9orf62, LCN1, MRPS2, PPP1R26) 0.133663625435374 2 0.331633080376491 0.955381538279404 181 0.62198100091587 4 4 0 -6.75520226511526 LTS-011 chr9 138415246 138415761 516 * LCN1 NA 0 NA 0.486 1 NA NA NA NA NA LTS-011 chr9 138415762 138742360 326599 * c(LINC01502, CAMSAP1, OBP2A, GLT6D1, LCN9, LCN1, SOHLH1, PAEP, KCNT1) 0.432888120154532 11 0.142640297761378 0.605326222069311 564 0.244551489200045 2 1 1 -7.03346637733279 LTS-011 chr9 138742361 138754282 11922 * CAMSAP1 NA 0 NA 1.31 1 NA NA NA NA NA LTS-011 chr9 138754283 139010814 256532 * c(UBAC1, NACC2, CAMSAP1, C9orf69) 0.462860787706056 8 0.0283599314929658 0.957815250847612 322 3.42322789672968 0 0 0 -8.67225591814504 LTS-011 chr9 139010815 139085031 74217 * character(0) NA 0 NA 0.562 1 NA NA NA NA NA LTS-011 chr9 139085032 139108519 23488 * c(QSOX2, LHX3) 0.469096024997049 3 0.0358375966456086 0.546061883497363 157 0.206705836575574 0 0 0 -8.33629871936115 LTS-011 chr9 139108520 139958583 850064 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, MIR4479, AGPAT2, SDCCAG3, LCN8, FAM69B, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, LCN12, C9orf142, PHPT1, LCN15, C9orf172, LCNL1, C9orf139, MIR126, LCN10, NOTCH1, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, CARD9, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, CCDC183, SNHG7, TMEM141, EDF1, SAPCD2, CLIC3, ENTPD2, SEC16A NA NA NA NA NA NA NA NA NA LTS-011 ) 0.430770822914863 113 0.092291609317654 0.83705461346006 3164 0.71614700349281 2 1 1 -6.79019971385653 LTS-011 NA NA NA NA LTS-011 chr9 139958584 139960894 2311 * SAPCD2 0.298 1 NA 1.20342554533147 29 2.3132789419035 4 4 0 -5.76441024169985 LTS-011 chr9 139960895 139997185 36291 * c(MAN1B1-AS1, MAN1B1, SAPCD2, UAP1L1) 0.274062104020423 13 0.146463874954429 1.01629284222109 179 0.402737142268192 5 4 1 -6.75137151848483 LTS-011 chr9 139997186 140001342 4157 * MAN1B1 NA 0 NA 0.934946960971774 23 0.282596242656615 3 NA NA -5.76465079304164 LTS-011 chr9 140001343 140001695 353 * MAN1B1 NA 0 NA 0.506 1 NA NA NA NA NA LTS-011 chr9 140001696 140002220 525 * MAN1B1 0.393 1 NA 0.473178131425574 13 0.26939300240279 0 0 0 -5.76453781094768 LTS-011 chr9 140002221 140075012 72792 * c(MIR3621, MAN1B1, GRIN1, ANAPC2, DPP7, LRRC26) 0.452043475746357 8 0.0293181440652128 0.614160370650661 337 0.265995786745736 2 1 1 -8.14313034912628 LTS-011 chr9 140075013 140075242 230 * ANAPC2 NA 0 NA 0.959 1 NA NA NA NA NA LTS-011 chr9 140075243 140777306 702064 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, ANAPC2, PNPLA7, CYSRT1, ENTPD8, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.444353036760614 22 0.102330643533893 0.872072697205862 1644 0.335263048544695 2 1 1 -6.85059644927583 LTS-011 chr9 140777307 140851275 73969 * CACNA1B 0 1 NA 0.614850406388934 37 0.80419107790984 1 1 0 -5.76442476725886 LTS-011 chr9 140851276 140935169 83894 * CACNA1B 0.252348053868873 5 0.24015661556576 0.904262298604409 82 0.898760768168078 2 2 0 -6.73419928585169 LTS-011 chr9 140935170 140938221 3052 * CACNA1B NA 0 NA 0.561 1 NA NA NA NA NA LTS-011 chr9 140938222 141070283 132062 * c(TUBBP5, CACNA1B) 0.386679890111378 7 0.105709394996264 0.614128865076759 219 0.330240219368228 2 1 1 -6.80299736944177 LTS-011 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.698501349103133 5 0.0670820393249937 1 NA NA -5.76838205888942 LTS-011 chr10 94832 282897 188066 * c(ZMYND11, TUBB8) 0.419 1 NA 0.976897561402623 37 0.302871901781742 3 3 0 -5.766780022992 LTS-011 chr10 282898 3215001 2932104 * c(PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, IDI1, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, IDI2) 0.403513794814673 47 0.0975598869662417 1.06725026059818 1554 0.46934563303239 3 2 1 -6.78101397572433 LTS-011 chr10 3215002 4872935 1657934 * c(LINC00704, PITRM1, KLF6, LINC00705, AKR1E2) 0.439906770292693 4 0.0276405499221705 1.81331679772242 158 1.64606547275466 6 3 3 -7.679191200317 LTS-011 chr10 4872936 5041537 168602 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.33943047644531 11 0.128421960738808 0.606412718791895 244 0.416595043489965 1 1 0 -6.73919959617979 LTS-011 chr10 5041538 5042576 1039 * c(AKR1C2, AKR1C3) NA 0 NA 0.83 1 NA NA NA NA NA LTS-011 chr10 5042577 5446906 404330 * c(AKR1C4, UCN3, AKR1C2, AKR1C8P, TUBAL3, AKR1C3) 0.372557761586141 18 0.0609205257488504 0.833310104551831 283 0.477581036965096 3 2 1 -6.78762174479113 LTS-011 chr10 5446907 5454513 7607 * character(0) NA 0 NA 2.062 1 NA NA NA NA NA LTS-011 chr10 5454514 6264984 810471 * c(MIR3155A, MIR3155B, NET1, GDI2, IL2RA, IL15RA, CALML5, PFKFB3, ANKRD16, FAM208B, ASB13, CALML3, FBXO18, RBM17) 0.387278616814739 25 0.0989771354067864 1.09236912046681 1069 0.472470462372413 3 2 1 -6.74555302899983 LTS-011 chr10 6264985 6265880 896 * PFKFB3 NA 0 NA 0.695 1 NA NA NA NA NA LTS-011 chr10 6265881 17813397 11547517 * c(ST8SIA6-AS1, PPIAP30, MIR1265, LINC00707, MIR4480, OPTN, RPP38, CELF2, NUDT5, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ST8SIA6, ITIH2, C1QL3, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, PFKFB3, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, NA NA NA NA NA NA NA NA NA LTS-011 ECHDC3, FAM188A, STAM, CUBN, ITIH5, FAM107B, CCDC3, TAF3, ITGA8, PRPF18, CDC123, HACD1, PTER, NMT2, USP6NL) 0.360813874871373 136 0.134194454557507 0.939302052200671 5770 0.490435965107658 3 2 1 -6.93920213625729 LTS-011 NA NA NA NA LTS-011 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.166 1 NA NA NA NA NA LTS-011 chr10 17842448 17953005 110558 * c(MRC1, NA, TMEM236) NA 0 NA 0.395597905394525 70 0.210745990385981 0 NA NA -5.76449190918772 LTS-011 chr10 17953006 18088080 135075 * c(MRC1, NA, TMEM236) NA 0 NA 0.0363322292528503 40 0.051406275183144 0 NA NA -18.029526397239 LTS-011 chr10 18088081 18196475 108395 * c(MRC1, NA, TMEM236) NA 0 NA 0.187449330230473 51 0.277160116532084 0 NA NA -6.21112976610917 LTS-011 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 0.707 1 NA NA NA NA NA LTS-011 chr10 18198201 21783915 3585715 * c(NEBL-AS1, SLC39A12-AS1, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, C10orf113, CASC10, MRC1, CACNB2, PLXDC2) 0.373989230969805 35 0.0907402053885133 0.923682813139825 1185 0.451873590887264 3 2 1 -6.8398527282595 LTS-011 chr10 21783916 21823698 39783 * c(MIR1915, SKIDA1, CASC10, MLLT10) 0.408 1 NA 1.66716444570279 166 0.870725056482732 6 6 0 -5.76441687714065 LTS-011 chr10 21823699 21827724 4026 * MLLT10 NA 0 NA 1.345 1 NA NA NA NA NA LTS-011 chr10 21827725 22701494 873770 * c(LOC100130992, COMMD3-BMI1, COMMD3, EBLN1, DNAJC1, BMI1, MLLT10, SPAG6) 0.345368186932993 5 0.189669976538196 1.14300339176717 486 0.646618106961503 4 3 1 -6.74426000701287 LTS-011 chr10 22701495 22705487 3993 * SPAG6 NA 0 NA 0.608 1 NA NA NA NA NA LTS-011 chr10 22705488 23633798 928311 * c(LOC100499489, ARMC3, MSRB2, PTF1A, C10orf67, PIP4K2A, SPAG6) 0.346967342576449 5 0.199332134890489 0.839774690640379 448 0.608364384503937 2 1 1 -6.78053963484425 LTS-011 chr10 23633799 23682433 48635 * character(0) NA 0 NA 2.265 1 NA NA NA NA NA LTS-011 chr10 23682434 24498311 815878 * c(OTUD1, KIAA1217) NA 0 NA 1.74012746970453 75 0.85429679210975 6 NA NA -5.76662453895114 LTS-011 chr10 24498312 24508523 10212 * KIAA1217 NA 0 NA 0.922 1 NA NA NA NA NA LTS-011 chr10 24508524 25464284 955761 * c(GPR158-AS1, ENKUR, KIAA1217, PRTFDC1, ARHGAP21, MIR603, THNSL1) 0.320431155411941 15 0.143291810153766 1.04113320120934 749 0.549970085248383 4 3 1 -6.78620783150789 LTS-011 chr10 25464285 26790640 1326356 * c(GPR158-AS1, GAD2, MYO3A, APBB1IP, GPR158) 0.350243870744637 16 0.149122195419282 0.673844633330575 572 0.308260510531281 1 1 0 -6.84136656560976 LTS-011 chr10 26790641 36810785 10020145 * c(ABI1, MIR938, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, APBB1IP, ARMC4, MTPAP, PARD3, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, CCDC7, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ACBD5, ARHGAP12) 0.381980578299911 102 0.0802256772452458 0.973488440259041 4202 0.535490171958306 3 2 1 -6.77988124240848 LTS-011 chr10 36810786 36812926 2141 * character(0) 0.089 1 NA 0.359398402789642 58 0.172384806395761 0 0 0 -5.76487176185891 LTS-011 chr10 36812927 36813072 146 * character(0) NA 0 NA 0.708 1 NA NA NA NA NA LTS-011 chr10 36813073 38645343 1832271 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.317123388663562 8 0.141723826003756 0.892930988622477 570 0.348039364322747 2 2 0 -6.96005043196474 LTS-011 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 0.771222242016696 61 0.317333441532332 2 NA NA -5.76601065660797 LTS-011 chr10 42379879 45423445 3043567 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF32, ZNF33B, ZNF239, LINC00839, BMS1) 0.406447407317915 47 0.114015907649064 1.03843712667062 1138 0.55607927277744 3 2 1 -6.76483494601459 LTS-011 chr10 45423446 45496375 72930 * c(C10orf10, C10orf25, TMEM72-AS1, TMEM72, ZNF22, RASSF4) 0.475790376462844 2 0.0212132034355964 1.70348134753151 267 0.535179245816548 6 3 3 -10.401752375204 LTS-011 chr10 45496376 45498720 2345 * c(C10orf25, ZNF22) NA 0 NA 1.311 1 NA NA NA NA NA LTS-011 chr10 45498721 45984965 486245 * c(RSU1P2, MIR3156-1, MARCH8, ALOX5, ANKRD30BP3, ZNF22, OR13A1) 0.409956179995837 7 0.180003571393141 1.153793895672 300 0.605650860741613 4 2 2 -6.73719957983193 LTS-011 chr10 45984966 46028534 43569 * MARCH8 NA 0 NA 0.612 1 NA NA NA NA NA LTS-011 chr10 46028535 47756145 1727611 * c(AGAP4, MARCH8, NA, FAM21C, PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, ZFAND4, GPRIN2) 0.301395235097368 30 0.101708282419101 0.811163841067261 474 0.708538578518298 2 2 0 -6.90821713569834 LTS-011 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.035 1 NA NA NA NA NA LTS-011 chr10 47903105 48370591 467487 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.438488212606447 50 0.291445605244489 0 NA NA -5.79439889369564 LTS-011 chr10 48370592 48370595 4 * c(ZNF488, PTPN20, GLUD1P7, NA, NA, NA) 0.397 1 NA 2.122 1 NA NA NA NA NA LTS-011 chr10 48370596 51124108 2753513 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.359051521359316 88 0.143559902701039 0.85836362166091 2284 0.453768917461958 2 1 1 -6.81033251859175 LTS-011 chr10 51124109 51362782 238674 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.003 1 NA NA NA NA NA LTS-011 chr10 51362783 51540256 177474 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.345149813137626 39 0.345311514194586 0 NA NA -5.78282471621445 LTS-011 chr10 51540257 51540364 108 * c(NA, PARG) NA 0 NA 1.101 1 NA NA NA NA NA LTS-011 chr10 51540365 54531461 2991097 * c(TIMM23, PRKG1-AS1, DKK1, CSTF2T, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, PRKG1, ASAH2, ASAH2B, MIR605, NCOA4, PARG) 0.42609681697724 24 0.0491563609931304 0.915033434560402 918 0.542368507736338 2 1 1 -6.95334197561286 LTS-011 chr10 54531462 54531534 73 * character(0) 0.459 1 NA 1.612 1 NA NA NA NA NA LTS-011 chr10 54531535 56345425 1813891 * PCDH15 0.176396241515835 9 0.203230233424503 0.793270683525083 396 0.534690316190933 2 2 0 -6.80423600156671 LTS-011 chr10 56345426 56423968 78543 * PCDH15 0.477 1 NA 0.707040172791596 9 0.374543870742949 2 2 0 -5.7709927853748 LTS-011 chr10 56423969 59986974 3563006 * c(MTRNR2L5, MIR3924, ZWINT, IPMK, PCDH15) 0.427554988954846 3 0.0176162803489651 0.769811148629483 188 0.360360559940692 2 1 1 -7.81167111573818 LTS-011 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.54 1 NA NA NA NA NA LTS-011 chr10 59997544 63526373 3528830 * c(MRLN, C10orf107, TMEM26, SLC16A9, FAM13C, IPMK, LINC01553, ANK3, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.403864007796699 30 0.0564943288782361 1.03718287008724 1786 0.579312865728339 3 2 1 -6.83248643419285 LTS-011 chr10 63526374 63942983 416610 * c(MIR548AV, RTKN2, ARID5B) 0.382 1 NA 1.58663449952809 197 0.516316982839883 6 6 0 -5.76555035440844 LTS-011 chr10 63942984 64566258 623275 * c(RTKN2, ZNF365, ADO) 0.358594690444731 20 0.103098113720046 1.07512319700243 474 0.444418056465417 3 2 1 -6.76598792348365 LTS-011 chr10 64566259 65928692 1362434 * c(MIR1296, EGR2, REEP3, JMJD1C, NRBF2, ADO, JMJD1C-AS1) NA 0 NA 1.12381295485872 534 0.48520630409678 4 NA NA -5.79165088821536 LTS-011 chr10 65928693 69905300 3976608 * c(SIRT1, HERC4, CTNNA3, ANXA2P3, LRRTM3, DNAJC12, MYPN) 0.229 1 NA 0.725460574767445 547 0.318246332675459 2 2 0 -6.05759824399937 LTS-011 chr10 69905301 70706612 801312 * c(DNA2, STOX1, ATOH7, HNRNPH3, RUFY2, CCAR1, PBLD, SNORD98, DDX50, TET1, SLC25A16, MYPN) 0.181047466978078 8 0.096583697973756 0.714679410104343 1207 0.424665166232016 2 2 0 -7.03420857040037 LTS-011 chr10 70706613 70715869 9257 * character(0) NA 0 NA 1.027 1 NA NA NA NA NA LTS-011 chr10 70715870 73510355 2794486 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, KIF1BP, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SRGN, SAR1A, CDH23, NPFFR1, C10orf54, SUPV3L1, TACR2, UNC5B-AS1, HKDC1, AIFM2, SGPL1, DDX21, VPS26A) 0.252758160191401 68 0.0859351492016249 0.871162312220534 3135 0.429773990309227 2 2 0 -6.77967495981432 LTS-011 chr10 73510356 73538062 27707 * c(CDH23, C10orf54) 0.308861674648045 4 0.0632982358890567 1.27523961338641 85 0.431193977808827 8 6 2 -6.77141924689412 LTS-011 chr10 73538063 73538985 923 * CDH23 NA 0 NA 0.572 1 NA NA NA NA NA LTS-011 chr10 73538986 76970939 3431954 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.286622641024996 25 0.156654311569562 0.800042408135866 3827 0.359912721832724 2 2 0 -6.77815650831211 LTS-011 chr10 76970940 77312184 341245 * c(ZNF503-AS2, COMTD1, ZNF503-AS1, VDAC2, ZNF503) 0.037 1 NA 1.17032372572722 229 0.584541769367113 4 4 0 -5.76580319141333 LTS-011 chr10 77312185 77542558 230374 * C10orf11 0.35 1 NA 0.933245066000997 9 0.191471132143842 3 3 0 -5.79453737651694 LTS-011 chr10 77542559 81273682 3731124 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, EIF5AL1, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.371205237799889 34 0.0886569878651773 1.02952623946505 1324 0.434848607020343 3 2 1 -6.74101042697826 LTS-011 chr10 81273683 81852257 578575 * c(BMS1P21, EIF5AL1, TMEM254-AS1, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.238875565639413 11 0.153347377485949 0.674858172746762 361 0.448445761114699 2 2 0 -6.7937323813568 LTS-011 chr10 81852258 81892385 40128 * c(PLAC9, TMEM254) NA 0 NA 1.414 1 NA NA NA NA NA LTS-011 chr10 81892386 82004049 111664 * c(PLAC9, ANXA11, LINC00857) 0.389136743165717 10 0.0723506891620406 1.15482589085152 209 0.503194832427432 3 2 1 -6.74489425335699 LTS-011 chr10 82004050 82004173 124 * character(0) NA 0 NA 0.573 1 NA NA NA NA NA LTS-011 chr10 82004174 82006266 2093 * character(0) 0.298806162317409 5 0.162439835015922 0.477820889459515 52 0.484966279868355 8 6 2 -6.74440570382453 LTS-011 chr10 82006267 82006519 253 * character(0) NA 0 NA 1.067 1 NA NA NA NA NA LTS-011 chr10 82006520 88704031 6697512 * c(GRID1-AS1, NRG3, LDB3, DYDC1, LINC00858, WAPL, LRIT1, GHITM, GRID1, LRIT2, SH2D4B, C10orf99, MAT1A, MIR346, CCSER2, RGR, BMPR1A, MMRN2, TSPAN14, FAM213A, DYDC2, CDHR1, OPN4) 0.389436280156278 54 0.0971432767227813 0.896890457608726 2006 0.415180473833808 2 1 1 -6.95864542793721 LTS-011 chr10 88704032 89729120 1025089 * c(KLLN, MIR4678, ADIRF, AGAP11, CFL1P1, GLUD1, LINC00863, FAM35A, PTEN, FAM25A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, PAPSS2, MINPP1) 0.329025562581207 11 0.169897241670584 1.10881302613342 777 0.537722291920514 4 3 1 -6.75517737294639 LTS-011 chr10 89729121 90583148 854028 * c(ANKRD22, LIPJ, LIPM, RNLS, LIPK, LIPN, LIPF) 0.415251006707708 11 0.0381859088717767 0.867594846545534 454 0.352598663347665 2 1 1 -6.81783806156293 LTS-011 chr10 90583149 90585767 2619 * ANKRD22 NA 0 NA 1.537 1 NA NA NA NA NA LTS-011 chr10 90585768 91163447 577680 * c(FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, IFIT2, IFIT1, IFIT3, FAS, LIPA, IFIT1B, STAMBPL1, ACTA2, CH25H) 0.462052278967135 6 0.0305133850411039 1.20116892882012 600 0.526205265662572 4 2 2 -8.43901751589146 LTS-011 chr10 91163448 91534033 370586 * c(IFIT5, FLJ37201, IFIT1, SLC16A12, LIPA, MIR107, PANK1, KIF20B) 0 1 NA 1.29828590915185 463 0.645391265986534 4 4 0 -5.76605651132304 LTS-011 chr10 91534034 91534075 42 * KIF20B NA 0 NA 1.300061017127 2 0.842871283174365 4 NA NA -5.76441024679558 LTS-011 chr10 91534076 92509282 975207 * c(HTR7, LINC00865, KIF20B) 0.122544090864454 2 0.212839141137151 0.732209188475191 82 0.839797178468447 3 3 0 -6.89395026502687 LTS-011 chr10 92509283 94414725 1905443 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CPEB3, ANKRD1, HTR7, IDE, KIF11, MARCH5, PPP1R3C, TNKS2, PCGF5, BTAF1) 0.230023218391998 12 0.223206437264618 1.19452712013444 1658 0.708243540082625 4 4 0 -6.78826690779537 LTS-011 chr10 94414726 94507612 92887 * c(HHEX, KIF11) 0.424 1 NA 1.19816577578943 97 0.445130554181942 4 4 0 -5.76458187281807 LTS-011 chr10 94507613 95132826 625214 * c(CYP26A1, MYOF, CYP26C1, EXOC6) 0.425954293320398 10 0.153781266016956 1.18972014418227 475 0.821145382940497 4 2 2 -6.74768933794729 LTS-011 chr10 95132827 95134494 1668 * MYOF NA 0 NA 2.657 1 NA NA NA NA NA LTS-011 chr10 95134495 95241947 107453 * MYOF 0.449720095389124 3 0.0461446999484592 1.66375467698968 127 0.831605422993715 6 3 3 -7.30670199437832 LTS-011 chr10 95241948 96480220 1238273 * c(PLCE1-AS1, FRA10AC1, CYP2C19, CYP2C18, SLC35G1, TBC1D12, MYOF, PIPSL, HELLS, FFAR4, PLCE1, PDE6C, CEP55, RBP4, NOC3L, LGI1) 0.367996604800402 40 0.175021447403688 1.05984266000934 1313 0.517182957180812 3 2 1 -6.74019316887479 LTS-011 chr10 96480221 96484088 3868 * c(CYP2C19, CYP2C18) NA 0 NA 0.687 1 NA NA NA NA NA LTS-011 chr10 96484089 96954280 470192 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18) 0.375934495570329 8 0.162242323172998 0.675680885120407 206 0.64378462666978 2 1 1 -6.77221128799423 LTS-011 chr10 96954281 96954298 18 * ACSM6 0.417 1 NA 1.465 1 NA NA NA NA NA LTS-011 chr10 96954299 99079155 2124857 * c(C10orf131, FRAT1, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, SORBS1, PIK3AP1, ACSM6, DNTT, TCTN3, C10orf12, BLNK, CC2D2B, CCNJ, TM9SF3, ALDH18A1, SLIT1, TLL2, ENTPD1-AS1, LCOR, ARHGAP19, PDLIM1, OPALIN, ENTPD1, ZNF518A) 0.41131371249379 71 0.119985191909944 1.09880222819701 2680 0.4881707457685 3 2 1 -6.80034126912091 LTS-011 chr10 99079156 99519344 440189 * c(FRAT1, MIR5692C2, HOGA1, MORN4, ZFYVE27, RRP12, FRAT2, ANKRD2, C10orf62, EXOSC1, PGAM1, PI4K2A, AVPI1, MMS19, UBTD1, MARVELD1, ZDHHC16) 0.455657233309014 22 0.0366324023295347 1.32279651299327 1076 0.543450711910116 4 2 2 -7.79720357954391 LTS-011 chr10 99519345 102747340 3227996 * c(DNMBP-AS1, MIR1287, MIR4685, ERLIN1, CHUK, ZFYVE27, ABCC2, COX15, CPN1, NKX2-3, DNMBP, SEC31B, CNNM1, R3HCC1L, GOT1, BLOC1S2, HPS1, GOLGA7B, NDUFB8, PAX2, CUTC, CRTAC1, CWF19L1, HIF1AN, SLF2, C10orf2, ENTPD7, SEMA4G, HPSE2, SCD, SFRP5, SNORA12, MIR608, WNT8B, SLC25A28, LOXL4, MRPL43, PYROXD2, OLMALINC, PKD2L1) 0.413897216842464 75 0.129514557253386 1.08289161478448 3305 0.482204381695764 3 2 1 -6.80077257829172 LTS-011 chr10 102747341 102747745 405 * C10orf2 NA 0 NA 0.932 1 NA NA NA NA NA LTS-011 chr10 102747746 102827860 80115 * c(C10orf2, PDZD7, KAZALD1, SFXN3, LZTS2) 0.457488881775467 5 0.032645060882161 1.38475909600673 469 0.498200468774643 4 2 2 -8.08996831028081 LTS-011 chr10 102827861 103339635 511775 * c(TLX1NB, LBX1, POLL, TLX1, LBX1-AS1, KAZALD1, BTRC) 0.440672120228241 3 0.0877800281005499 0.960617267781148 262 0.623924905772832 2 1 1 -6.86700437635864 LTS-011 chr10 103339636 103339970 335 * POLL NA 0 NA 1.704 1 NA NA NA NA NA LTS-011 chr10 103339971 104142679 802709 * c(KCNIP2-AS1, MIR3158-1, MIR3158-2, NPM3, MGEA5, FGF8, PPRC1, DPCD, POLL, KCNIP2, PITX3, FBXW4, C10orf76, HPS6, ELOVL3, GBF1, LDB1, NOLC1) 0.255028611255021 4 0.281170766617015 1.22168740353093 1315 0.48172988061798 4 3 1 -6.77373200408336 LTS-011 chr10 104142680 104155599 12920 * NFKB2 NA 0 NA 2.914 1 NA NA NA NA NA LTS-011 chr10 104155600 104614157 458558 * c(RPARP-AS1, BORCS7-ASMT, ACTR1A, SFXN2, BORCS7, CYP17A1, ARL3, NFKB2, SUFU, WBP1L, PSD, MIR146B, CUEDC2, FBXL15, MFSD13A, C10orf95, TRIM8) 0.399691981885577 8 0.156263456563404 1.52804271925897 1073 0.673977336488256 5 3 2 -6.73594516262064 LTS-011 chr10 104614158 104620095 5938 * c(BORCS7-ASMT, BORCS7) NA 0 NA 1.122 1 NA NA NA NA NA LTS-011 chr10 104620096 104913176 293081 * c(BORCS7-ASMT, BORCS7, NT5C2, CNNM2, AS3MT) NA 0 NA 1.12363747268706 384 0.410745351317542 4 NA NA -5.77264206202014 LTS-011 chr10 104913177 104934563 21387 * NT5C2 NA 0 NA 0.657 1 NA NA NA NA NA LTS-011 chr10 104934564 105086478 151915 * c(NT5C2, RPEL1, PCGF6, INA) 0.268797491042411 2 0.341532575313102 0.742507858184624 138 0.600852977033965 2 2 0 -6.73788519291364 LTS-011 chr10 105086479 105093593 7115 * PCGF6 NA 0 NA 1.988 1 NA NA NA NA NA LTS-011 chr10 105093594 106210048 1116455 * c(MIR936, MIR1307, SH3PXD2A-AS1, MIR4482, GSTO2, SFR1, CALHM3, COL17A1, CFAP58, PDCD11, CALHM1, CALHM2, TAF5, MIR609, OBFC1, CFAP43, PCGF6, USMG5, ITPRIP, NEURL1, GSTO1, SH3PXD2A, SLK) 0.44873119220763 33 0.0856531832626803 1.17957147585836 1996 0.631090740866611 4 2 2 -6.90670376629918 LTS-011 chr10 106210049 106214133 4085 * CFAP58 NA 0 NA 0.657 1 NA NA NA NA NA LTS-011 chr10 106214134 111625055 5410922 * c(SORCS1, CFAP58, SORCS3, XPNPEP1) 0.295959128499723 8 0.132394432338697 0.76235681566589 401 0.457677354705228 2 2 0 -6.88276895439667 LTS-011 chr10 111625056 111628335 3280 * XPNPEP1 NA 0 NA 1.097 1 NA NA NA NA NA LTS-011 chr10 111628336 112760280 1131945 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.395080100695596 14 0.126764729729119 1.11888410495277 963 0.559882533380413 4 2 2 -6.75375382999048 LTS-011 chr10 112760281 112764373 4093 * SHOC2 NA 0 NA 0.846 1 NA NA NA NA NA LTS-011 chr10 112764374 113932743 1168370 * c(ADRA2A, GPAM, SHOC2) 0.428051054555313 9 0.0608175778683908 0.907665218273391 349 0.323794521222617 2 1 1 -6.91772085888569 LTS-011 chr10 113932744 114577795 645052 * c(MIR4295, VTI1A, GUCY2GP, ACSL5, GPAM, ZDHHC6, TECTB) 0.408269998770737 5 0.0827689555328567 1.47379394344787 423 0.656504128906707 6 3 3 -6.74667500956108 LTS-011 chr10 114577796 114889661 311866 * c(VTI1A, TCF7L2) NA 0 NA 3.005148203589 58 1.67665911483412 13 NA NA -5.7644675955991 LTS-011 chr10 114889662 116622032 1732371 * c(MIR2110, MIR4483, ADRB1, HABP2, VWA2, NHLRC2, ABLIM1, NRAP, CCDC186, TDRD1, FAM160B1, TCF7L2, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.370713981357026 41 0.133436131611765 1.29949689488983 1993 0.655626480376315 4 2 2 -6.77427948570741 LTS-011 chr10 116622033 116622110 78 * FAM160B1 NA 0 NA 0.815 1 NA NA NA NA NA LTS-011 chr10 116622111 119045001 2422891 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, TRUB1, C10orf82, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, FAM160B1, SLC18A2) 0.312251244548859 26 0.177729457322077 0.917668885406038 1632 0.44892665400894 3 2 1 -6.90178084054067 LTS-011 chr10 119045002 119049660 4659 * PDZD8 NA 0 NA 1.239 1 NA NA NA NA NA LTS-011 chr10 119049661 120793846 1744186 * c(PDZD8, CACUL1, EMX2OS, EMX2, RAB11FIP2, CASC2, PRLHR, NANOS1, FAM204A) 0.3504021098098 5 0.197544931597852 1.19124599196221 674 0.459719737017996 4 3 1 -6.74502802642309 LTS-011 chr10 120793847 120794319 473 * NANOS1 NA 0 NA 0.91 1 NA NA NA NA NA LTS-011 chr10 120794320 124274439 3480120 * c(MIR3941, MIR4682, MIR4681, TACC2, PRDX3, ATE1, SEC23IP, BTBD16, SFXN4, PLPP4, FGFR2, INPP5F, WDR11-AS1, GRK5, ARMS2, NSMCE4A, WDR11, HTRA1, PLEKHA1, RGS10, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.409502054000244 58 0.0937276498867705 0.991475618219186 2303 0.443308291396933 3 2 1 -6.79750996735246 LTS-011 chr10 124274440 124320138 45699 * character(0) NA 0 NA 0.544 1 NA NA NA NA NA LTS-011 chr10 124320139 124691599 371461 * c(FAM24B-CUZD1, FAM24A, DMBT1, FAM24B, DMBT1P1, C10orf120, LOC399815, CUZD1, C10orf88) 0.341714485197362 12 0.174051890555836 0.748708491192481 360 0.475182149497618 1 1 0 -6.78153207152242 LTS-011 chr10 124691600 129245862 4554263 * c(TEX36-AS1, MIR4296, MIR4484, LINC00601, FANK1-AS1, C10orf90, PSTK, MMP21, CPXM2, CTBP2, DOCK1, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, TEX36, NKX1-2, METTL10, FLJ37035, OAT, CHST15, ZRANB1, DHX32, BCCIP, LHPP, FAM196A, IKZF5, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.356701820919474 95 0.127108160377257 0.996532648352892 3017 0.496310678227566 3 2 1 -6.76101407756875 LTS-011 chr10 129245863 129249638 3776 * DOCK1 NA 0 NA 0.474 1 NA NA NA NA NA LTS-011 chr10 129249639 129539463 289825 * c(DOCK1, FOXI2, NPS) 0.454 1 NA 0.596800723130763 106 0.198418735756006 1 1 0 -5.76542955892822 LTS-011 chr10 129539464 129676052 136589 * character(0) NA 0 NA 1.149 1 NA NA NA NA NA LTS-011 chr10 129676053 132890894 3214842 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, CLRN3, EBF3, TCERG1L, LINC00959, MGMT, MKI67, PTPRE) 0.428972225482433 35 0.0872094166529118 1.07990330167924 835 0.552340341363441 4 2 2 -6.89124061974371 LTS-011 chr10 132890895 134143985 1253091 * c(DPYSL4, TCERG1L, JAKMIP3, STK32C, LINC01164, PPP2R2D, BNIP3) 0.371509406615118 27 0.0944659000264448 0.846301070343946 537 0.358553629998641 2 1 1 -6.80554202570619 LTS-011 chr10 134143986 134504017 360032 * c(C10orf91, PWWP2B, STK32C, INPP5A, LRRC27) 0.384008155728644 27 0.107603948285412 1.65289043291305 309 0.726565451428511 5 3 2 -6.74733962559233 LTS-011 chr10 134504018 134511289 7272 * INPP5A NA 0 NA 0.962 1 NA NA NA NA NA LTS-011 chr10 134511290 134691597 180308 * c(INPP5A, CFAP46, NKX6-2) 0.45382208675686 5 0.0305172082602587 1.00555560636162 239 0.421145056451919 4 2 2 -8.10838190480549 LTS-011 chr10 134691598 134692910 1313 * CFAP46 NA 0 NA 0.653 1 NA NA NA NA NA LTS-011 chr10 134692911 134756359 63449 * CFAP46 0.489 1 NA 0.542697709327806 176 0.197506704143981 1 1 0 -5.77624334062268 LTS-011 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.45 1 NA NA NA NA NA LTS-011 chr10 134884462 135051717 167256 * c(VENTX, UTF1, ADGRA1, KNDC1) 0.422545499577634 24 0.132040260658568 0.745239504444437 433 0.304697178585017 2 1 1 -6.75528062083895 LTS-011 chr10 135051718 135053286 1569 * VENTX NA 0 NA 1.074 1 NA NA NA NA NA LTS-011 chr10 135053287 135103720 50434 * c(ADAM8, TUBGCP2, VENTX, MIR202) 0.422 1 NA 1.29282810747626 225 0.600484581929395 4 4 0 -5.76463123541518 LTS-011 chr10 135103721 135104196 476 * TUBGCP2 0 1 NA 2.0852216473896 7 1.6480135228294 8 8 0 -5.76441015311162 LTS-011 chr10 135104197 135233876 129680 * c(MIR3944, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, FUOM, CALY, MTG1) 0.269207309058373 4 0.210963464451391 1.38759860021716 403 0.703439534236404 5 4 1 -6.73587614827747 LTS-011 chr10 135233877 135233882 6 * MTG1 NA 0 NA 0.894 1 NA NA NA NA NA LTS-011 chr10 135233883 135438955 205073 * c(CYP2E1, SPRNP1, FRG2B, SPRN, SCART1, MTG1, SYCE1) 0.302200513938338 13 0.186756697610994 0.893132970012245 377 0.527190496273001 4 3 1 -6.78944982078681 LTS-011 chr10 135438956 135473116 34161 * FRG2B NA 0 NA 0.831857635815095 7 0.332792585196703 2 NA NA -5.76450393526246 LTS-011 chr11 193025 193096 72 * SCGB1C1 0.246 1 NA 0.955465304287676 3 0.293056877300863 3 3 0 -5.76441230090356 LTS-011 chr11 193097 625085 431989 * c(MIR210HG, IFITM3, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, SIRT3, LMNTD2, HRAS, ANO9, B4GALNT4, IRF7, IFITM5, MIR210, BET1L, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, PGGHG, RASSF7, PTDSS2, IFITM1) 0.410516128200078 98 0.0877115488436216 0.861372989777932 1778 0.462155137652918 2 1 1 -6.74221333079438 LTS-011 chr11 625086 636689 11604 * c(CDHR5, SCT) 0.337 1 NA 1.09216744079457 24 0.532820671289716 3 3 0 -5.76452231319997 LTS-011 chr11 636690 769189 132500 * c(DEAF1, DRD4, TMEM80, PDDC1, EPS8L2, TALDO1) 0.287014197843054 9 0.202625269894947 0.867555523149389 352 0.356435422171689 2 2 0 -6.76056222694656 LTS-011 chr11 769190 770007 818 * PDDC1 0.49 1 NA 1.38529455672436 5 0.627716337209731 5 5 0 -5.76441171402784 LTS-011 chr11 770008 842543 72536 * c(LOC171391, CRACR2B, PDDC1, CEND1, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, SLC25A22, CD151) 0.466063405073317 27 0.0290927390320586 0.909367554707398 511 0.503459604796446 2 1 1 -8.75262161008209 LTS-011 chr11 842544 866920 24377 * TSPAN4 0.41 1 NA 0.715859694804783 55 0.334299103960945 2 2 0 -5.76654230773608 LTS-011 chr11 866921 1009668 142748 * c(AP2A2, CHID1, TSPAN4) 0.246950483150029 2 0.272236110756821 0.760524230074531 254 0.314287090137715 2 2 0 -6.73694998063066 LTS-011 chr11 1009669 1009767 99 * AP2A2 NA 0 NA 0.69 1 NA NA NA NA NA LTS-011 chr11 1009768 1276562 266795 * c(AP2A2, MUC2, MUC6, MUC5B) 0.35349735547677 121 0.105831010364736 0.635245525245269 1084 0.389962476366689 1 1 0 -6.77445265087275 LTS-011 chr11 1276563 1432353 155791 * c(TOLLIP-AS1, TOLLIP, MUC5B, BRSK2) 0.298056372218101 9 0.209258479185698 0.73997136121618 189 0.432882125454357 1 1 0 -6.76387274184967 LTS-011 chr11 1432354 1466977 34624 * BRSK2 0.494 1 NA 0.686263925210744 56 0.367297373682804 1 1 0 -5.76679545222028 LTS-011 chr11 1466978 2324165 857188 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, CTSD, DUSP8, H19, C11orf21, KRTAP5-AS1, IGF2, INS, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MOB2, SYT8, BRSK2) 0.442279588641625 60 0.081064755799104 0.767555441480274 1237 0.348301318697287 2 1 1 -6.88934682381502 LTS-011 chr11 2324166 3239517 915352 * c(TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, TRPM5, KCNQ1, MRGPRG, NAP1L4, SLC22A18, SLC22A18AS, KCNQ1DN, SNORA54, PHLDA2, CARS, CD81) 0.424470848064977 33 0.102767039433563 0.929969490640673 1023 0.374308047486448 2 1 1 -6.83026889163681 LTS-011 chr11 3239518 3740775 501258 * c(OR7E12P, MRGPRE, ART5, MRGPRG-AS1, MRGPRG, ART1, NUP98, CHRNA10, TSSC2, TRPC2, ZNF195) 0.455486234356762 17 0.0528087559584805 0.708403720067335 484 0.321971456936543 2 1 1 -7.3409790060774 LTS-011 chr11 3740776 3741894 1119 * NUP98 NA 0 NA 1.142 1 NA NA NA NA NA LTS-011 chr11 3741895 4132893 390999 * c(MIR4687, PGAP2, RHOG, NUP98, RRM1, STIM1) 0.428234002711229 9 0.0605041320902961 0.930819779378544 366 0.385660374193888 2 1 1 -6.86941784865925 LTS-011 chr11 4132894 4133160 267 * RRM1 NA 0 NA 0.668 1 NA NA NA NA NA LTS-011 chr11 4133161 4702702 569542 * c(LOC100506082, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR52K1, OR52I1, OR51D1, TRIM68, RRM1, TRIM21, OR51E2) 0.40313141942763 22 0.100273273793317 0.633254008356864 518 0.340974198444894 2 1 1 -6.91174514625846 LTS-011 chr11 4702703 5529687 826985 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR51T1, OR51A4, OR51A2, UBQLN3, MMP26, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2) 0.427043397518983 68 0.0713242604707155 0.495519244269671 1101 0.286482837543114 0 0 0 -7.07646560878288 LTS-011 chr11 5529688 5841888 312201 * c(TRIM22, TRIM6, UBQLNL, HBG2, OR52B6, OR56B1, OR52H1, OR52N4, OR52N5, OR52N2, TRIM6-TRIM34, UBQLN3, TRIM34, OR52N1, TRIM5) 0.389582002959468 28 0.147283887953821 0.656255282792284 606 0.444382493048719 2 1 1 -6.78090731052101 LTS-011 chr11 5841889 6220706 378818 * c(OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM5) 0.441169442944707 18 0.038071484190884 0.500468721310329 346 0.258294323483447 0 0 0 -7.46418280312932 LTS-011 chr11 6220707 6565881 345175 * c(TRIM3, PRKCDBP, OR52W1, CNGA4, DNHD1, C11orf42, ARFIP2, TIMM10B, APBB1, HPX, SMPD1, FAM160A2, CCKBR) 0.429918253502361 15 0.121599733708982 0.861718136724418 939 0.347393511517391 2 1 1 -6.76942595342326 LTS-011 chr11 6565882 6622464 56583 * c(DNHD1, RRP8) 0.456426164136052 8 0.0253827838167076 0.647521935893511 406 0.262238183637953 2 1 1 -8.69611797837776 LTS-011 chr11 6622465 6640213 17749 * c(TPP1, RRP8, ILK, TAF10) 0.421241408824289 11 0.0484156248258011 1.29147109232366 255 0.45107465260901 4 2 2 -6.82310832898965 LTS-011 chr11 6640214 6735905 95692 * c(TPP1, GVINP1, MRPL17, DCHS1) 0.422646909920694 19 0.0739777507250604 0.897208997924974 347 0.360153275730334 2 1 1 -6.7821001798267 LTS-011 chr11 6735906 7490208 754303 * c(OR2D3, OR2D2, SYT9, OR10A5, OR2AG1, RBMXL2, OR10A4, NLRP14, OR2AG2, OR10A2, GVINP1, ZNF214, ZNF215, OR6A2) 0.416923368052996 13 0.136253675556163 0.536079957795919 702 0.284732959176885 1 1 0 -7.06942701917133 LTS-011 chr11 7490209 7490213 5 * SYT9 NA 0 NA 0.839 1 NA NA NA NA NA LTS-011 chr11 7490214 7727957 237744 * c(SYT9, OLFML1, OVCH2, CYB5R2, PPFIBP2) 0.43748786889276 18 0.0434211779297897 0.870538214638495 398 0.342470115210304 2 1 1 -7.10778851419405 LTS-011 chr11 7727958 7981566 253609 * c(OR5P2, OR5P3, OR5E1P, OR10A3, LOC283299, NLRP10, OR10A6) 0.251716338501111 2 0.327390439689371 0.479257516300585 158 0.206243543653024 1 1 0 -6.95468800143885 LTS-011 chr11 7981567 8673492 691926 * c(NLRP10, LMO1, STK33, TUB, RIC3, EIF3F, TRIM66) 0.361002279675197 17 0.175515480295982 0.749537252110704 926 0.380753464628454 2 1 1 -6.78520173822955 LTS-011 chr11 8673493 8693244 19752 * TRIM66 NA 0 NA 1.267 1 NA NA NA NA NA LTS-011 chr11 8693245 8939699 246455 * c(AKIP1, RPL27A, SNORA3A, ST5, SNORA3B, TRIM66) 0.468882369655331 5 0.0235690474987854 1.14449767795735 364 0.45259363062552 4 2 2 -9.5956586640575 LTS-011 chr11 8939700 8940803 1104 * AKIP1 NA 0 NA 0.578 1 NA NA NA NA NA LTS-011 chr11 8940804 9009796 68993 * c(TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3) NA 0 NA 0.677188104415989 233 0.286830019679658 1 NA NA -5.77062233409468 LTS-011 chr11 9009797 9025304 15508 * NRIP3 NA 0 NA 1.47 1 NA NA NA NA NA LTS-011 chr11 9025305 12959912 3934608 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, TMEM41B, LOC440028, RNF141, USP47, PARVA, NRIP3, SCUBE2, ZBED5, LOC644656, SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, SBF2, MICALCL, MICAL2, CTR9) 0.446873645205817 59 0.0911705583995066 0.904192834364887 3016 0.713428512797384 2 1 1 -6.92435608253179 LTS-011 chr11 12959913 15268472 2308560 * c(LINC00958, SPON1, CYP2R1, COPB1, RRAS2, INSC, ARNTL, PDE3B, PSMA1, PTH, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10) 0.40543958277566 22 0.162656950511755 0.773849063094831 1209 0.375608389167996 2 1 1 -6.75746799355449 LTS-011 chr11 15268473 15268532 60 * INSC NA 0 NA 1.762 1 NA NA NA NA NA LTS-011 chr11 15268533 17108222 1839690 * c(OR7E14P, C11orf58, PLEKHA7, INSC, PIK3C2A, SOX6, RPS13) 0.342324826603557 11 0.213285425491928 1.01252109543037 588 0.447486140506074 3 2 1 -6.75291501268401 LTS-011 chr11 17108223 17108228 6 * PIK3C2A NA 0 NA 0.84 1 NA NA NA NA NA LTS-011 chr11 17108229 17630043 521815 * c(USH1C, OTOG, NCR3LG1, KCNJ11, NUCB2, PIK3C2A, ABCC8) 0.405807731818309 36 0.150354427830556 0.786367146701001 1044 0.610689670712508 2 1 1 -6.73430086122687 LTS-011 chr11 17630044 18261982 631939 * c(SAA2-SAA4, SAAL1, MRGPRX3, MRGPRX4, SERGEF, OTOG, KCNC1, MYOD1, LOC494141, SAA2, SAA3P, SAA4, TPH1) 0.419369430161164 23 0.10475595580529 0.596383878624034 910 0.309125395927808 2 1 1 -7.10834596616617 LTS-011 chr11 18261983 18263714 1732 * c(SAA2-SAA4, SAA2) NA 0 NA 0.99 1 NA NA NA NA NA LTS-011 chr11 18263715 19247392 983678 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, MRGPRX2, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, IGSF22, GTF2H1, LDHA, LDHC, ZDHHC13, UEVLD, SAA1, SAA2, TSG101, E2F8, CSRP3, PTPN5) 0.435820761155139 22 0.10367733203304 0.748244338903332 1374 0.38025280002403 2 1 1 -6.82317526063651 LTS-011 chr11 19247393 20515826 1268434 * c(LOC100126784, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, DBX1, NAV2-AS4, E2F8, NAV2) 0.456234171705951 16 0.0451796414328401 0.904900667093342 639 0.404443237412126 2 1 1 -7.53649428049055 LTS-011 chr11 20515827 20529849 14023 * PRMT3 NA 0 NA 0.754 1 NA NA NA NA NA LTS-011 chr11 20529850 26682427 6152578 * c(CCDC179, PRMT3, MUC15, ANO5, FANCF, SVIP, GAS2, LUZP2, NELL1, SLC17A6, ANO3, SLC6A5) 0.370714822035692 42 0.159869088430316 0.686564182195972 1274 0.333391747927186 1 1 0 -7.2568778826046 LTS-011 chr11 26682428 27517670 835243 * c(SLC5A12, FIBIN, LIN7C, LGR4, ANO3, BBOX1, CCDC34) 0.449661219741296 34 0.0447639879451752 0.883348898833276 636 0.322628146053563 2 1 1 -7.37050204037586 LTS-011 chr11 27517671 27678422 160752 * c(LINC00678, BDNF-AS, LIN7C, BDNF) 0 1 NA 0.93946699785738 121 0.43132267471641 3 3 0 -5.76797703009698 LTS-011 chr11 27678423 30255590 2577168 * c(METTL15, FSHB, KCNA4, BDNF-AS, BDNF, MIR610, KIF18A) 0.316544065386599 7 0.212174344304283 0.764216107425231 417 0.469634780175125 2 2 0 -6.82640703497626 LTS-011 chr11 30255591 35547489 5291899 * c(C11orf91, DCDC5, MIR1343, HIPK3, EIF3M, DNAJC24, ARL14EP, CSTF3, IMMP1L, ELF5, FSHB, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, WT1-AS, NAT10, TCP11L1, RCN1, SLC1A2, MPPED2, WT1, PRRG4, QSER1, PDHX, CAT, DEPDC7, CD44, CD59) 0.327419018784715 79 0.0788697133126945 1.19369002337382 4332 0.562038502509211 4 3 1 -6.74126004307985 LTS-011 chr11 35547490 36518825 971336 * c(MIR3973, LDLRAD3, FJX1, PAMR1, COMMD9, TRIM44, TRAF6, PRR5L) 0.234627874611081 4 0.173565309513931 1.43527367303826 544 1.35310420527949 6 5 1 -6.74246506912096 LTS-011 chr11 36518826 43965911 7447086 * c(MIR670, LOC100507205, ALKBH3-AS1, C11orf74, ALKBH3, C11orf96, HNRNPKP3, MIR129-2, HSD17B12, TTC17, LRRC4C, RAG1, RAG2, TRAF6, SEC14L1P1, API5) 0.325611362214068 11 0.0907921702671446 0.958345352872634 842 0.412471088725437 3 2 1 -7.05009380652275 LTS-011 chr11 43965912 44069476 103565 * character(0) NA 0 NA 0.533 1 NA NA NA NA NA LTS-011 chr11 44069477 44092880 23404 * c(ACCSL, ACCS) 0.346729048397696 2 0.0403050865276332 0.634636133793854 100 0.261574491389077 1 1 0 -6.88233147179971 LTS-011 chr11 44092881 44098969 6089 * c(EXT2, ACCS) 0.46 1 NA 1.05868988061498 19 0.228845768946931 3 3 0 -5.76450307811971 LTS-011 chr11 44098970 47193954 3094985 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, EXT2, F2, LOC221122, HARBI1, CD82, DKFZp779M0652, ARHGAP1, LRP4, MDK, PHF21A, SLC35C1, AMBRA1, PRDM11, SYT13, ALX4, SNORD67, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, TSPAN18, CREB3L1, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.435212372126392 27 0.0916873791673396 0.80558766217547 2978 0.333466640641845 2 1 1 -6.81064519070551 LTS-011 chr11 47193955 47194204 250 * ARFGAP2 NA 0 NA 1.023 1 NA NA NA NA NA LTS-011 chr11 47194205 47289897 95693 * c(NR1H3, DDB2, PACSIN3, ACP2, ARFGAP2) 0.393 1 NA 1.06933396305603 315 0.374594703906669 3 3 0 -5.76529503608116 LTS-011 chr11 47289898 47603399 313502 * c(NR1H3, CELF1, PTPMT1, MYBPC3, NDUFS3, KBTBD4, PSMC3, RAPSN, SPI1, MADD, SLC39A13) 0.27113171930344 3 0.230846991172364 0.847451385436888 892 0.400524593963235 2 2 0 -6.74232319795484 LTS-011 chr11 47603400 47603666 267 * NDUFS3 NA 0 NA 0.702 1 NA NA NA NA NA LTS-011 chr11 47603667 48161117 557451 * c(C1QTNF4, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, PTPRJ, AGBL2) 0.435140283349695 6 0.0327622750532784 0.688423708559616 758 0.332152288533771 2 1 1 -7.3638456484356 LTS-011 chr11 48161118 48161123 6 * PTPRJ NA 0 NA 0.355 1 NA NA NA NA NA LTS-011 chr11 48161124 48346493 185370 * c(OR4X2, OR4B1, OR4C3, OR4S1, OR4X1, PTPRJ) 0.393392059175162 5 0.0500469779307402 0.492340545045241 191 0.222340785902583 0 0 0 -6.85225082940137 LTS-011 chr11 48346494 48346513 20 * OR4C3 0.464 1 NA 0.958 1 NA NA NA NA NA LTS-011 chr11 48346514 48388725 42212 * c(OR4C3, OR4C45) 0.446664669947732 109 0.0436507818684867 0.935764717320567 200 0.527173576632495 2 1 1 -7.29697127253585 LTS-011 chr11 48388726 49426821 1038096 * c(FOLH1, TRIM49B, OR4A47, TRIM64C) 0 1 NA 0.57266144987754 291 0.473063774812336 1 1 0 -5.77327610236385 LTS-011 chr11 49426822 51527703 2100882 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 0.622877918872113 171 0.268327947436157 1 NA NA -5.7776918992665 LTS-011 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.444 1 NA 0.493690774687277 23 0.256192306722344 1 1 0 -5.7933557291335 LTS-011 chr11 55111585 56459080 1347496 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.32430123393217 31 0.0880433544230598 0.706410854261881 1034 0.362158057028536 1 1 0 -6.87506519084043 LTS-011 chr11 56459081 56467848 8768 * OR8U8 NA 0 NA 0.8 1 NA NA NA NA NA LTS-011 chr11 56467849 57068374 600526 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, OR8U8, OR9G9, TNKS1BP1) 0.315130631856364 34 0.0958708885570968 0.965548136611144 304 0.646334624414506 4 3 1 -6.7941049481108 LTS-011 chr11 57068375 57137009 68635 * c(P2RX3, SSRP1, TNKS1BP1) 0 1 NA 1.58438605862204 286 0.619527538728338 6 6 0 -5.76455145458643 LTS-011 chr11 57137010 57137284 275 * P2RX3 NA 0 NA 1.067 1 NA NA NA NA NA LTS-011 chr11 57137285 57244834 107550 * c(PRG3, SLC43A3, RTN4RL2, P2RX3, PRG2) 0.360454708593697 4 0.0532697537695329 1.01124357397335 254 0.542321920682824 6 4 2 -6.78718007808317 LTS-011 chr11 57244835 57581908 337074 * c(TMX2-CTNND1, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, MIR130A, TMX2, BTBD18, SERPING1, SLC43A1, UBE2L6) 0.335617035504204 10 0.047194750178854 1.36506713196869 817 0.551395128865222 4 3 1 -6.75422776247359 LTS-011 chr11 57581909 57582848 940 * c(TMX2-CTNND1, CTNND1) NA 0 NA 0.996 1 NA NA NA NA NA LTS-011 chr11 57582849 58295084 712236 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1, LPXN) 0.326807792463782 15 0.055744057979304 0.761688639096183 469 0.383559172847794 1 1 0 -6.88134660408541 LTS-011 chr11 58295085 58393231 98147 * c(CNTF, ZFP91-CNTF, ZFP91, LPXN) 0.349157991953702 5 0.0286041954964652 1.5631190706632 246 0.745978241517575 12 8 4 -6.7737191773567 LTS-011 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.804 1 NA NA NA NA NA LTS-011 chr11 58476545 58894204 417660 * c(GLYAT, GLYATL2, LOC283194, FAM111B, GLYATL1) 0.361 1 NA 0.824611196546896 216 0.308114727449562 2 2 0 -5.76491019264189 LTS-011 chr11 58894205 58894285 81 * FAM111B NA 0 NA 1.308 1 NA NA NA NA NA LTS-011 chr11 58894286 59056200 161915 * c(MPEG1, DTX4, FAM111B, FAM111A) 0.294136198753132 8 0.131048450691229 1.37189572645294 317 0.673028363142697 5 4 1 -6.73759292041128 LTS-011 chr11 59056201 59131857 75657 * character(0) NA 0 NA 0.523 1 NA NA NA NA NA LTS-011 chr11 59131858 59282846 150989 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) NA 0 NA 0.668435839447616 144 0.169821539945005 1 NA NA -5.79452832151475 LTS-011 chr11 59282847 59596788 313942 * c(MIR3162, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, OR10V2P) 0.305183907834631 2 0.115965512114594 1.31384432592507 444 0.714477764505367 5 4 1 -6.75727296209886 LTS-011 chr11 59596789 60539074 942286 * c(OOSP2, MS4A15, MS4A2, MS4A6E, GIF, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, MS4A8, MS4A14, MS4A1, MS4A3) 0.34656360258746 32 0.0889334145175026 0.850834545063153 951 0.460585934980792 3 2 1 -6.90804022706953 LTS-011 chr11 60539075 62327914 1788840 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, EEF1G, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, FTH1, TKFC, DKFZP434K028, PRPF19, MS4A10, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, SYT7, CD5, CD6, FADS2) 0.305601166692432 55 0.0910437531254341 1.22061686094684 3749 0.546072033719364 4 3 1 -6.77074541356972 LTS-011 chr11 62327915 62676326 348412 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, TUT1, SLC3A2, STX5, SNORA57, METTL12, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22) 0.347190722820821 28 0.06953156757106 1.52825298880049 1829 0.63622187040773 6 4 2 -6.77129531752037 LTS-011 chr11 62676327 62676330 4 * CHRM1 NA 0 NA 1.051 1 NA NA NA NA NA LTS-011 chr11 62676331 63177453 501123 * c(CHRM1, SLC22A9, SLC22A24, SLC22A25, SLC22A10, SLC22A6, SLC22A8) 0.367133084790466 2 0.0523259018078045 0.779672401685421 533 0.278354019750372 2 1 1 -7.00018521100903 LTS-011 chr11 63177454 63177730 277 * SLC22A9 NA 0 NA 2.46 1 NA NA NA NA NA LTS-011 chr11 63177731 63886528 708798 * c(RTN3, PLA2G16, HRASLS5, COX8A, C11orf84, MARK2, FLRT1, ATL3, RCOR2, MACROD1, HRASLS2, OTUB1, RARRES3, C11orf95, NAA40, LGALS12) 0.251666673038349 10 0.173036572884334 1.12611866842268 1218 0.56314931580327 3 3 0 -6.80730062923243 LTS-011 chr11 63886529 64216832 330304 * c(MIR1237, LOC100996455, STIP1, ESRRA, FKBP2, FLRT1, PRDX5, TEX40, PPP1R14B, CCDC88B, MACROD1, DNAJC4, KCNK4, TRMT112, PLCB3, GPR137, BAD, VEGFB, FERMT3, TRPT1, NUDT22, RPS6KA4) 0.34374189899922 25 0.0883346289213164 1.39365193756303 1152 0.557406814608682 4 3 1 -6.76111642168513 LTS-011 chr11 64216833 64216906 74 * LOC100996455 NA 0 NA 0.896 1 NA NA NA NA NA LTS-011 chr11 64216907 64519177 302271 * c(LOC100996455, RASGRP2, SLC22A12, SLC22A11, PYGM, NRXN2) 0.322245765978379 11 0.0596530880096824 1.08326963705676 596 0.424815462223699 4 3 1 -6.75532054053625 LTS-011 chr11 64519178 64519387 210 * PYGM NA 0 NA 1.455 1 NA NA NA NA NA LTS-011 chr11 64519388 64556691 37304 * c(PYGM, MAP4K2, SF1) NA 0 NA 1.69663359585683 172 0.844924726802127 6 NA NA -5.76444255248154 LTS-011 chr11 64556692 64851682 294991 * c(NAALADL1, ARL2-SNX15, EHD1, CDCA5, BATF2, GPHA2, ATG2A, MAJIN, SAC3D1, ARL2, MIR192, MIR194-2, MEN1, PPP2R5B, CDC42BPG, MAP4K2) 0.301395192438916 16 0.0882656737733682 1.14314726484975 1294 0.491674913704248 4 3 1 -6.79267312752065 LTS-011 chr11 64851683 65233774 382092 * c(TMEM262, CDC42EP2, FAU, TIGD3, POLA2, SLC25A45, NEAT1, SPDYC, SLC22A20, DPF2, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, CAPN1, FRMD8, SYVN1) 0.326033779577546 26 0.0812803789361246 1.41011807969191 1189 0.588077857761439 4 3 1 -6.74619237067075 LTS-011 chr11 65233775 65265224 31450 * character(0) NA 0 NA 3.819 1 NA NA NA NA NA LTS-011 chr11 65265225 65292678 27454 * c(MALAT1, SCYL1) NA 0 NA 2.45597852426302 184 0.745594023141934 10 NA NA -5.76441147456772 LTS-011 chr11 65292679 65735233 442555 * c(MIR4489, MIR4690, KCNK7, KAT5, SSSCA1, DRAP1, CFL1, CCDC85B, CTSW, FAM89B, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, EFEMP2, PCNX3, LTBP3, MAP3K11, OVOL1, SCYL1, RELA, SIPA1, MUS81, FOSL1, C11orf68, RNASEH2C, SART1, AP5B1, FIBP) 0.320858143803982 33 0.0764507541037386 1.43808619721878 1990 0.620589404511687 4 3 1 -6.75607444105371 LTS-011 chr11 65735234 65743872 8639 * SART1 NA 0 NA 1.06 1 NA NA NA NA NA LTS-011 chr11 65743873 66392941 649069 * c(RBM14-RBM4, DPP3, RBM14, YIF1A, SF3B2, B4GAT1, CATSPER1, CST6, PELI3, CNIH2, ZDHHC24, TMEM151A, BRMS1, NPAS4, SLC29A2, CCDC87, PACS1, CD248, BBS1, KLC2, MRPL11, RAB1B, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, RIN1, CCS) 0.331472764348641 28 0.0811874504859102 1.214290197979 2133 0.54500379397672 4 3 1 -6.73402570255468 LTS-011 chr11 66392942 66411642 18701 * c(RBM14-RBM4, RBM14, RBM4) NA 0 NA 2.05917369288632 96 0.79277965235807 8 NA NA -5.76441014322643 LTS-011 chr11 66411643 66999400 587758 * c(RBM14-RBM4, KDM2A, C11orf86, RHOD, PC, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, SYT12, RCE1) 0.181415579562252 7 0.1622995466942 1.1546525326665 885 0.479657409052067 4 4 0 -6.74650376659377 LTS-011 chr11 66999401 67810544 811144 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.347195304381144 58 0.0683138928863121 1.4507419999748 1760 0.6716330311532 6 4 2 -6.7864977351449 LTS-011 chr11 67810545 67810835 291 * TCIRG1 NA 0 NA 0.53 1 NA NA NA NA NA LTS-011 chr11 67810836 68853439 1042604 * c(TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, MRPL21, TPCN2, IGHMBP2, LRP5, GAL, KMT5B, C11orf24, PPP6R3, TESMIN) 0.304015888709533 26 0.0961610828046037 1.07790354623039 1339 0.511566103086912 4 3 1 -6.81197024380587 LTS-011 chr11 68853440 68853922 483 * TPCN2 NA 0 NA 1.358 1 NA NA NA NA NA LTS-011 chr11 68853923 70317438 1463516 * c(MIR548K, CTTN, TPCN2, ORAOV1, FGF3, FGF4, SHANK2, MYEOV, ANO1, CCND1, PPFIA1, FADD, FGF19) 0.273382028214385 25 0.134875251003783 1.41533481652013 1013 0.73437040795913 5 4 1 -6.73658018318702 LTS-011 chr11 70317439 71634523 1317085 * c(LOC100129216, LOC100133315, MIR3664, SHANK2-AS1, DHCR7, SHANK2-AS3, SHANK2, DEFB108B, ALG1L9P, KRTAP5-9, KRTAP5-10, FLJ42102, KRTAP5-7, KRTAP5-11, NADSYN1, FAM86C1, KRTAP5-8) 0.272854778158426 10 0.134970943375067 1.03717243219316 745 0.476035240902324 3 3 0 -6.92217788503657 LTS-011 chr11 71634524 71639517 4994 * LOC100133315 NA 0 NA 1.735 1 NA NA NA NA NA LTS-011 chr11 71639518 73387357 1747840 * c(MIR3165, MIR4692, IL18BP, STARD10, ARAP1, LRTOMT, FAM168A, FOLR1, FOLR2, FOLR3, ANAPC15, INPPL1, PHOX2A, MIR139, NUMA1, P2RY2, P2RY6, PDE2A, LAMTOR1, RNF121, PLEKHB1, RAB6A, CLPB, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.309999200568989 23 0.118859584344359 1.31926797570015 2357 0.576503203451625 4 3 1 -6.76358682751516 LTS-011 chr11 73387358 73390696 3339 * RAB6A NA 0 NA 0.668880318067946 41 0.147422608882614 1 NA NA -5.76531006472895 LTS-011 chr11 73390697 73415076 24380 * RAB6A NA 0 NA 1.901 1 NA NA NA NA NA LTS-011 chr11 73415077 74166577 751501 * c(KCNE3, C2CD3, P4HA3, PGM2L1, DNAJB13, COA4, PPME1, MRPL48, RAB6A, UCP2, UCP3, PAAF1) 0.216021877112145 6 0.158284132706556 1.16847556817264 1084 0.56889352962874 3 3 0 -6.7679161951387 LTS-011 chr11 74166578 74202919 36342 * KCNE3 0.37 1 NA 1.25008753365797 43 0.396173077605877 4 4 0 -5.76445371453975 LTS-011 chr11 74202920 74562279 359360 * c(MIR4696, POLD3, XRRA1, RNF169, CHRDL2, LIPT2) 0.376915826427584 10 0.0620219495196839 1.19706849764614 506 0.466155707881949 3 2 1 -6.76054806774389 LTS-011 chr11 74562280 82641317 8079038 * c(MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR5579, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, TSKU, TENM4, LRRC32, AQP11, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UVRAG, WNT11, ALG8, NARS2, MOGAT2, GDPD5, DGAT2, SERPINH1, INTS4, NA NA NA NA NA NA NA NA NA LTS-011 SPCS2, GAB2) 0.36302334649851 76 0.131226336546856 0.96673640104114 4549 0.457489895726877 3 2 1 -6.81176181358945 LTS-011 NA NA NA NA LTS-011 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.395 1 NA NA NA NA NA LTS-011 chr11 82642812 82645342 2531 * DDIAS 0.384099459658961 2 0.0127279220613579 0.492570318253807 56 0.145502974486488 3 2 1 -6.80941068774086 LTS-011 chr11 82645343 83167964 522622 * c(SNORA70E, RAB30-AS1, DLG2, DDIAS, RAB30, ANKRD42, PCF11, CCDC90B) 0.387993073252877 10 0.0615319248665096 1.05362173349442 765 0.501413177012789 3 2 1 -6.74232934706724 LTS-011 chr11 83167965 83691745 523781 * DLG2 0.479 1 NA 0.709153751571938 202 0.314317666835547 2 2 0 -5.82359224288329 LTS-011 chr11 83691746 83770342 78597 * DLG2 NA 0 NA 1.202 1 NA NA NA NA NA LTS-011 chr11 83770343 88241831 4471489 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, CCDC83, CCDC89, RAB38, GRM5, HIKESHI, SYTL2, TMEM126B, CREBZF, CCDC81, TMEM135, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.394311437824601 32 0.0919068109291215 0.986847166093735 1782 0.499327114847956 3 2 1 -6.75809472703492 LTS-011 chr11 88241832 89925061 1683230 * c(NAALAD2, GRM5-AS1, TRIM64, FOLH1B, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.312848966266443 16 0.170810567588777 0.717442338048228 666 0.417428981921693 1 1 0 -6.89778242721524 LTS-011 chr11 89925062 90602370 677309 * c(NAALAD2, MIR4490, CHORDC1) 0.302828037373954 10 0.150307240898989 1.17552411598253 201 0.699476193393584 4 3 1 -6.75201678736649 LTS-011 chr11 91536381 93269197 1732817 * c(SLC36A4, FAT3, DEUP1, MTNR1B, SMCO4) 0.35542891231083 13 0.159170002649965 0.749034659389488 739 0.288164924766775 2 1 1 -6.86848413381844 LTS-011 chr11 93269198 93340520 71323 * SMCO4 NA 0 NA 0.972 1 NA NA NA NA NA LTS-011 chr11 93340521 94705392 1364872 * c(MIR1304, GPR83, PIWIL4, AMOTL1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, MRE11A, CWC15, ANKRD49, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.386434161663876 23 0.104111315465252 0.999054500224862 1726 0.439688276513182 3 2 1 -6.73670017984709 LTS-011 chr11 94705393 94730188 24796 * c(CWC15, KDM4D) NA 0 NA 0.633 1 NA NA NA NA NA LTS-011 chr11 94730189 94783131 52943 * c(KDM4E, KDM4D) 0.363459208987197 2 0.00212132034355964 0.663315461657531 111 0.297672268652926 6 4 2 -7.08073268878003 LTS-011 chr11 94783132 95711448 928317 * c(FAM76B, SESN3, ENDOD1, MAML2, MTMR2, CEP57) 0.420546680214016 22 0.0452596166624608 1.11986581992361 803 0.640549354500861 4 2 2 -6.8399784608277 LTS-011 chr11 95711449 96126194 414746 * c(MIR1260B, CCDC82, MAML2, JRKL) NA 0 NA 1.28051841827317 248 0.470302960589024 4 NA NA -5.76637176494688 LTS-011 chr11 96126195 99690376 3564182 * c(JRKL-AS1, CNTN5, JRKL) 0.085 1 NA 4.1010158292261 17 1.96510474387799 18 18 0 -5.76444102758125 LTS-011 chr11 99690377 100998305 1307929 * c(ARHGAP42, PGR, CNTN5, TMEM133) 0.0921689148206545 19 0.0291687969146877 5.24934309703996 641 2.39418931871062 20 19 1 -6.73859288255478 LTS-011 chr11 100998306 102495998 1497693 * c(MIR3920, LOC101054525, YAP1, TMEM123, ANGPTL5, BIRC2, BIRC3, MMP7, PGR, CEP126, TRPC6, C11orf70, MMP20) 0.142404010872796 40 0.0549511438018191 3.70753088496988 1128 1.94848458088892 19 17 2 -6.73888257775367 LTS-011 chr11 102495999 102496154 156 * MMP20 NA 0 NA 3.41605056854646 6 1.33190396300434 15 NA NA -5.76441017288238 LTS-011 chr11 102496155 102552488 56334 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-011 chr11 102552489 102562700 10212 * MMP27 0.34 1 NA 0.839781939233242 27 0.353987026336863 2 2 0 -5.76446018344942 LTS-011 chr11 102562701 111411541 8848841 * c(LOC100132078, WTAPP1, CASP12, MIR4491, MIR4693, CARD16, COLCA2, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, FDX1, EXPH5, GRIA4, GUCY1A2, C11orf53, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP8, MMP10, MMP12, MMP13, CARD17, ATM, NPAT, POU2AF1, SLC35F2, RAB39A, BTG4, ELMOD1, ARHGAP20, CARD18, RDX, AASDHPPT, MMP27, LOC643733, LOC643923, SLN, DYNC2H1, PDGFD, CUL5, CASP1, NA NA NA NA NA NA NA NA NA LTS-011 CASP4, CASP5, DCUN1D5, MSANTD4, ZC3H12C, ALKBH8) 0.372763977795256 112 0.120183557594571 0.944209630681125 5112 0.483560545822432 3 2 1 -6.87058890222538 LTS-011 NA NA NA NA LTS-011 chr11 111411542 111978419 566878 * c(HSPB2-C11orf52, PIH1D2, CRYAB, LAYN, DLAT, SIK2, TIMM8B, HSPB2, PPP2R1B, C11orf57, SDHD, C11orf1, ALG9, DIXDC1, FDXACB1) 0.325771368280161 4 0.212204893126117 1.13994370524332 1273 0.484654796126684 4 3 1 -6.74115701070254 LTS-011 chr11 111978420 112014081 35662 * IL18 NA 0 NA 0.58 1 NA NA NA NA NA LTS-011 chr11 112014082 114392587 2378506 * c(NCAM1-AS1, MIR4301, RBM7, NXPE1, DRD2, ANKK1, REXO2, HTR3A, PLET1, IL18, NCAM1, NNMT, C11orf71, TTC12, TEX12, USP28, PTS, CLDN25, ZBTB16, TMPRSS5, BCO2, HTR3B, ZW10) 0.384861439485707 33 0.0820283002716413 0.872939729060272 1558 0.455475025572145 2 1 1 -6.79440002602597 LTS-011 chr11 114392588 114392685 98 * NXPE1 NA 0 NA 0.557 1 NA NA NA NA NA LTS-011 chr11 114392686 114579152 186467 * c(NXPE1, NXPE2, NXPE4) 0.408137887192212 21 0.0628234866605673 0.608619262484002 183 0.348361668095781 2 1 1 -6.8146349203669 LTS-011 chr11 114579153 120042063 5462911 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, TRIM29, CADM1, SLC37A4, RNF214, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, NA NA NA NA NA NA NA NA NA LTS-011 NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.37940541291914 148 0.109532415377302 1.02273176935352 7144 0.499770295360686 3 2 1 -6.7331857986165 LTS-011 NA NA NA NA LTS-011 chr11 120042064 120042145 82 * character(0) NA 0 NA 2.088 1 NA NA NA NA NA LTS-011 chr11 120042146 120308137 265992 * c(TMEM136, OAF, ARHGEF12, POU2F3, LOC649133) 0.243766302566898 3 0.193148474840816 1.39928233706836 316 0.647119504049754 6 5 1 -6.74314091817717 LTS-011 chr11 120308138 120310762 2625 * ARHGEF12 NA 0 NA 0.732 1 NA NA NA NA NA LTS-011 chr11 120310763 123624994 3314232 * c(MIR4493, TBCEL, ARHGEF12, GRIK4, HSPA8, LOC341056, BSX, OR6X1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.39913441861296 41 0.12617866253075 0.900833331758703 2330 0.557235546494488 2 1 1 -6.79954002852225 LTS-011 chr11 123624995 124490065 865071 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A) 0.382050064107245 46 0.0862855723745285 0.668532202053104 774 0.397076885272623 2 1 1 -6.89001975172015 LTS-011 chr11 124490066 125542255 1052190 * c(CHEK1, PANX3, TMEM218, SLC37A2, HEPACAM, VSIG2, STT3A, NRGN, SPA17, SIAE, ROBO4, ACRV1, PKNOX2, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM, EI24, FEZ1) 0.357077384600275 42 0.137439216847034 1.05029543613873 1786 0.526708087706907 3 2 1 -6.75279964330182 LTS-011 chr11 125542256 125708941 166686 * c(PATE3, CHEK1, PATE1, PATE2, PATE4, ACRV1) 0.336759502173008 4 0.222984304380376 0.699383738821969 205 1.7595724622692 1 1 0 -6.73498850675847 LTS-011 chr11 125708942 125708946 5 * PATE4 NA 0 NA 1.229 1 NA NA NA NA NA LTS-011 chr11 125708947 128838719 3129773 * c(MIR3167, SENCR, KIRREL3-AS2, TIRAP, ETS1, C11orf45, HYLS1, FLI1, KIRREL3-AS3, DCPS, DDX25, KCNJ1, KCNJ5, PATE4, ST3GAL4-AS1, CDON, FOXRED1, TP53AIP1, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4, ARHGAP32) 0.391492220366817 50 0.0764455922302167 1.01737418395452 1866 0.518329527766195 3 2 1 -6.74468392500364 LTS-011 chr11 128838720 129321424 482705 * c(BARX2, ARHGAP32) 0.0785396152365168 5 0.21063760348048 0.731904051047129 304 0.610557731591052 3 3 0 -6.99893880441635 LTS-011 chr11 129321425 129321428 4 * BARX2 NA 0 NA 1.009 1 NA NA NA NA NA LTS-011 chr11 129321429 131240551 1919123 * c(ADAMTS8, TMEM45B, ADAMTS15, C11orf44, ZBTB44, APLP2, SNX19, LINC00167, NFRKB, NTM, PRDM10, ST14, BARX2) 0.375721794957328 48 0.112917764512734 1.1020679886116 1498 0.585690759214842 3 2 1 -6.75393551116789 LTS-011 chr11 131240552 131240682 131 * NTM NA 0 NA 0.508 1 NA NA NA NA NA LTS-011 chr11 131240683 133794793 2554111 * c(SPATA19, IGSF9B, MIR4697HG, OPCML, NTM) 0.160952630193985 5 0.252382249772047 0.745241789692542 416 0.496599448832853 2 2 0 -6.84695571566519 LTS-011 chr11 133794794 133795635 842 * IGSF9B NA 0 NA 1.05 1 NA NA NA NA NA LTS-011 chr11 133795636 134245284 449649 * c(LOC100128239, VPS26B, GLB1L3, IGSF9B, NCAPD3, ACAD8, THYN1, JAM3, GLB1L2) 0.373752875566913 23 0.129233266437672 0.983743893756234 943 0.40199666178032 3 2 1 -6.73711970222566 LTS-011 chr11 134245285 134856681 611397 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 0.724151217618501 47 0.170561601612133 2 NA NA -5.92987247007206 LTS-011 chr12 90923 247900 156978 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.258 1 NA 0.740695798894562 41 0.285151592118657 2 2 0 -5.77453202754261 LTS-011 chr12 247901 3030006 2782106 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CACNA2D4) 0.249961785052498 95 0.102574254642993 0.814465475714076 3218 0.369635369903699 2 2 0 -6.73412432692942 LTS-011 chr12 3030007 6145660 3115654 * c(AKAP3, RAD51AP1, TSPAN9, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PRMT8, PARP11, ANO2, C12orf4, TIGAR, TEAD4, TULP3, VWF, FGF23, CRACR2A, DYRK4, CCND2) 0.266655472220144 55 0.100177401565981 0.680499846912608 2184 0.394841461999444 1 1 0 -7.09649315332718 LTS-011 chr12 6145661 6664663 519003 * c(IFFO1, GAPDH, LTBR, MRPL51, TAPBPL, PLEKHG6, SCNN1A, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, VWF, CD9, CD27, NCAPD2) 0.281391408914116 24 0.0614899544052004 1.07820258022537 1094 0.46299661257467 5 4 1 -6.85031712800288 LTS-011 chr12 6664664 6934097 269434 * c(CHD4, ZNF384, PIANP, IFFO1, GPR162, LAG3, NOP2, COPS7A, ING4, LPAR5, PTMS, SCARNA11, MLF2, ACRBP, CD4) 0.277072984928436 16 0.0528131533490159 0.858701523277495 1014 0.358546755859041 2 2 0 -6.94223940954661 LTS-011 chr12 6934098 7079557 145460 * c(LRRC23, P3H3, C12orf57, PHB2, DSTNP2, ATN1, ENO2, GPR162, GNB3, RPL13P5, MIR141, MIR200C, PTPN6, SCARNA12, TPI1, USP5, CDCA3, SPSB2) 0.235023077831951 14 0.0400398839620235 1.19007031726583 906 0.633049432034973 2 2 0 -6.80620737463853 LTS-011 chr12 7079558 7079563 6 * PHB2 0.266 1 NA 0.169 1 NA NA NA NA NA LTS-011 chr12 7079564 7355396 275833 * c(LPCAT3, EMG1, PHB2, C1RL-AS1, C1RL, PEX5, C1R, C1S, RBP5, CLSTN3) 0.280039857632595 3 0.0410365690573664 0.881781160771163 676 0.389195163363042 5 4 1 -6.98563755970938 LTS-011 chr12 7355397 7355926 530 * PEX5 NA 0 NA 0.449 1 NA NA NA NA NA LTS-011 chr12 7355927 8074091 718165 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, SLC2A3, NANOG, CD163, GDF3) 0.253459802692141 13 0.153213819086185 0.5207159790747 815 0.288962571921592 1 1 0 -6.98230220041236 LTS-011 chr12 8074092 9090446 1016355 * c(A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.234324159633623 24 0.101129911786627 0.69224892304757 1130 0.393226897159807 2 2 0 -6.8412869892683 LTS-011 chr12 9090447 9093793 3347 * c(PHC1, M6PR) 0.284055612829385 2 0.00777817459305199 0.263561172409946 58 0.173884167973247 5 4 1 -6.92408743627491 LTS-011 chr12 9093794 9590154 496361 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.259391207862347 19 0.116010661941955 0.730321154559358 690 0.43179729062781 2 2 0 -6.75992168890772 LTS-011 chr12 9590155 9590570 416 * DDX12P NA 0 NA 0.29 1 NA NA NA NA NA LTS-011 chr12 9590571 9711905 121335 * DDX12P NA 0 NA 0.381788302696357 73 0.145150663079401 0 NA NA -5.77077205131426 LTS-011 chr12 9711906 9712700 795 * character(0) NA 0 NA 0.625 1 NA NA NA NA NA LTS-011 chr12 9712701 10862742 1150042 * c(KLRF2, KLRC4-KLRK1, KLRA1P, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.303274246589761 39 0.0857718704773435 0.681156021349606 1512 0.390620845382575 1 1 0 -6.8376279811395 LTS-011 chr12 10862743 10863188 446 * YBX3 NA 0 NA 1.133 1 NA NA NA NA NA LTS-011 chr12 10863189 10875990 12802 * YBX3 NA 0 NA 1.27030221570999 43 0.531041847762777 4 NA NA -5.76444116268324 LTS-011 chr12 10875991 10954006 78016 * character(0) NA 0 NA 0.58 1 NA NA NA NA NA LTS-011 chr12 10954007 11548488 594482 * c(SMIM10L1, PRH1-PRR4, PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, TAS2R42, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, PRB1, PRB3, PRB4, PRH1, PRH2, PRB2) 0.182558094023849 37 0.0877931725200835 0.56515103613952 582 0.341861893895495 2 2 0 -7.40717565996236 LTS-011 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 2.051 1 NA NA NA NA NA LTS-011 chr12 11802940 12815450 1012511 * c(BORCS5, CREBL2, ETV6, GPR19, LRP6, LOH12CR2, MANSC1, BCL2L14, DUSP16) 0.297588640859071 20 0.0539489037008753 0.829779762607495 746 0.427891136859773 1 1 0 -7.21069838581574 LTS-011 chr12 12815451 12870034 54584 * GPR19 NA 0 NA 1.595 1 NA NA NA NA NA LTS-011 chr12 12870035 12942910 72876 * c(CDKN1B, DDX47, MIR613, APOLD1) NA 0 NA 1.5017804707869 133 0.904132622359806 5 NA NA -5.76451897004178 LTS-011 chr12 12942911 12943209 299 * c(DDX47, APOLD1) NA 0 NA 0.664 1 NA NA NA NA NA LTS-011 chr12 12943210 15836005 2892796 * c(LOC100506314, HIST4H4, ERP27, C12orf60, EMP1, EPS8, LINC01559, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, ART4, MGP, SMCO3, HEBP1, DDX47, PDE6H, WBP11, GPRC5D, ATF7IP, H2AFJ, FAM234B, PTPRO, MIR614, PLBD1, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.228384060918932 54 0.0938116170676924 0.848650330254714 2209 0.399232873378722 2 2 0 -6.77283755302188 LTS-011 chr12 15836006 16035285 199280 * EPS8 NA 0 NA 2.472 1 NA NA NA NA NA LTS-011 chr12 16035286 16064724 29439 * c(STRAP, DERA) NA 0 NA 1.37574992324479 81 0.57893982847961 5 NA NA -5.76450551634181 LTS-011 chr12 16064725 16109748 45024 * DERA NA 0 NA 0.869 1 NA NA NA NA NA LTS-011 chr12 16109749 22487577 6377829 * c(LOC100506393, ABCC9, MIR3974, SLCO1B1, AEBP2, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, MGST1, GOLT1B, DERA, PDE3A, PIK3C2G, SLCO1C1, PLEKHA5, LMO3, CMAS, RECQL, ST8SIA1, SLCO1A2, SKP1P2, SLC15A5, RERGL, PYROXD1, SPX, PLCZ1, CAPZA3) 0.233634916275623 59 0.12020994200898 0.731373846796389 2655 0.402992627651329 2 2 0 -6.99373543121451 LTS-011 chr12 22487578 24965254 2477677 * c(MIR920, LINC00477, ETNK1, BCAT1, ST8SIA1, SOX5, C2CD5) 0.246268064004025 5 0.0892692556258873 0.975422219332372 511 0.402723356307039 3 3 0 -6.93598583635312 LTS-011 chr12 24965255 26232836 1267582 * c(MIR4302, RASSF8-AS1, RASSF8, ETFRF1, LMNTD1, C12orf77, KRAS, LRMP, CASC1, BCAT1) 0.281180312533546 7 0.132296924342466 0.737302388759422 830 0.416524596884629 2 2 0 -6.81798696737268 LTS-011 chr12 26232837 26272964 40128 * BHLHE41 NA 0 NA 3 1 NA NA NA NA NA LTS-011 chr12 26272965 27126583 853619 * c(FGFR1OP2, ITPR2, TM7SF3, ASUN, BHLHE41, SSPN) 0.230403138785754 18 0.118549802005552 1.00552576342199 722 0.425441197115829 3 3 0 -6.78363381068387 LTS-011 chr12 27126584 29658287 2531704 * c(MANSC4, OVCH1-AS1, STK38L, SMCO2, OVCH1, REP15, ERGIC2, TM7SF3, CCDC91, FAR2, ARNTL2, PTHLH, KLHL42, MRPS35, C12orf71, TMTC1, PPFIBP1, MED21) 0.231220601993171 30 0.0959815834825415 0.803911238783888 1738 1.30404363725408 2 2 0 -6.74663857672321 LTS-011 chr12 29658288 30782329 1124042 * c(IPO8, TMTC1) 0.218989450845061 9 0.135299154140413 1.07744830504456 171 0.623742163352221 3 3 0 -6.75529195109926 LTS-011 chr12 30782330 30782402 73 * IPO8 0.412 1 NA 1.881 1 NA NA NA NA NA LTS-011 chr12 30782403 33592590 2810188 * c(LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, SYT10, H3F3C, TSPAN11, YARS2, PKP2, KIAA1551, FAM60A, BICD1, CAPRIN2, FLJ13224) 0.362934230803551 77 0.104773358235935 1.03413714893146 2205 0.522880532924079 3 2 1 -6.75159551149897 LTS-011 chr12 33592591 34182671 590081 * c(SYT10, ALG10) NA 0 NA 0.927342837867657 75 0.458640746570139 3 NA NA -5.7798689902986 LTS-011 chr12 38710341 39047346 337006 * c(ALG10B, CPNE8) 0 1 NA 0.786203207882936 101 0.432202309613963 2 2 0 -5.76565623341241 LTS-011 chr12 39047347 44187577 5140231 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, IRAK4, PPHLN1, KIF21A, TWF1, ADAMTS20, PUS7L, ZCRB1) 0.330078390618581 65 0.150979621650891 0.912322117194973 2993 0.45432353504319 3 2 1 -6.98288128835484 LTS-011 chr12 44187578 44189408 1831 * TWF1 NA 0 NA 0.504443071867178 48 0.206503927074434 1 NA NA -5.76527532280812 LTS-011 chr12 44189409 44200169 10761 * TWF1 NA 0 NA 1.35347476395645 59 0.661877186709424 5 NA NA -5.76446120424773 LTS-011 chr12 44200170 44238370 38201 * c(TWF1, TMEM117) NA 0 NA 0.438 1 NA NA NA NA NA LTS-011 chr12 44238371 45567542 1329172 * c(DBX2, NELL2, PLEKHA8P1, RACGAP1P, TMEM117) 0.254549004053853 5 0.216891678033068 0.747764094434989 330 0.435181529711631 2 2 0 -6.76365396085896 LTS-011 chr12 45567543 45567778 236 * PLEKHA8P1 NA 0 NA 1.013 1 NA NA NA NA NA LTS-011 chr12 45567779 47162104 1594326 * c(ANO6, ARID2, LINC00938, PLEKHA8P1, SLC38A2, SLC38A4, RNY5, SLC38A1, SCAF11) 0.17883054519968 5 0.234844629489371 1.16808249643554 991 0.644072246638219 4 4 0 -6.74151709720525 LTS-011 chr12 47162105 47471439 309335 * c(AMIGO2, SLC38A4) 0.401 1 NA 0.865781817817706 109 0.303614669132218 2 2 0 -5.7722610423629 LTS-011 chr12 47471440 48298749 827310 * c(PCED1B-AS1, MIR4698, RAPGEF3, AMIGO2, HDAC7, SLC48A1, VDR, RPAP3, ENDOU, PCED1B) 0.387919303180702 26 0.0466369447475348 1.16103673949145 879 0.403043020098833 3 2 1 -6.79699301408845 LTS-011 chr12 48298750 48357924 59175 * c(VDR, TMEM106C) NA 0 NA 0.52 1 NA NA NA NA NA LTS-011 chr12 48357925 49411005 1053081 * c(MIR4701, ADCY6, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, DDN, ANP32D, LINC00935, RND1, SENP1, H1FNT, OR8S1, ARF3, CCDC184, LALBA, FKBP11, PFKM, KANSL2, PRKAG1, SNORA2A, SNORA2B, SNORA2C, WNT1, WNT10B, CACNB3, TMEM106C, CCDC65, CCNT1, DDX23) 0.393136225920235 46 0.166861393490769 0.746737938925378 2365 0.358288334876621 2 1 1 -6.77057238127703 LTS-011 chr12 49411006 49411086 81 * PRKAG1 NA 0 NA 1.631 1 NA NA NA NA NA LTS-011 chr12 49411087 49415213 4127 * c(PRKAG1, KMT2D) NA 0 NA 1.66395691726011 68 0.708351104857199 6 NA NA -5.76441093149559 LTS-011 chr12 49415214 51637588 2222375 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, TUBA1B, MCRS1, LARP4, FAM186A, RHEBL1, BCDIN3D, FAIM2, KCNH3, PRPF40B, METTL7A, LETMD1, GPD1, LOC283332, TMPRSS12, RACGAP1, C1QL4, AQP2, AQP5, AQP6, ASIC1, ATF1, SLC11A2, DHH, LIMA1, POU6F1, LMBR1L, PRPH, DIP2B, NCKAP5L, HIGD1C, SPATS2, SMARCD1, TMBIM6, TFCP2, TUBA1A, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, COX14, FMNL3, CERS5, DAZAP2) 0.390402707295355 53 0.157277038258689 0.820974333960803 4736 0.392279864632575 2 1 1 -6.73724897645117 LTS-011 chr12 51637589 51639782 2194 * c(SMAGP, DAZAP2) NA 0 NA 0.433 1 NA NA NA NA NA LTS-011 chr12 51639783 52204228 564446 * c(GALNT6, CELA1, BIN2, SMAGP, SCN8A, SLC4A8, DAZAP2) 0.443318883771511 11 0.0476130234284696 0.667872231027717 645 0.311437551540912 2 1 1 -7.27981557431666 LTS-011 chr12 52204229 52789700 585472 * c(KRT80, GRASP, C12orf80, LINC00592, NR4A1, ANKRD33, KRT7, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, ATG101, SCN8A, ACVR1B, ACVRL1) 0.420813988053287 41 0.125146752878761 1.01811769015674 1078 0.550149110790877 4 2 2 -6.78660446669466 LTS-011 chr12 52789701 52789888 188 * KRT82 NA 0 NA 0.791 1 NA NA NA NA NA LTS-011 chr12 52789889 53242582 452694 * c(KRT71, KRT74, KRT72, KRT78, KRT6C, KRT73, KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT82, KRT76, KRT75) 0.388299760545949 54 0.136906487950889 0.70953719400815 1231 0.420717160313577 2 1 1 -6.76781702176589 LTS-011 chr12 53242583 54813255 1570673 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, SP7, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, IGFBP6, ITGA5, ITGB7, KRT8, KRT18, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, CSAD, ATP5G2, PFDN5, GPR84, PRR13, CALCOCO1, RARG, C12orf10, SP1, TARBP2, MIR615, NA NA NA NA NA NA NA NA NA LTS-011 MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ESPL1) 0.420307705088097 38 0.108956018375563 0.922955039498688 3530 0.447327336059251 2 1 1 -6.82363179723786 LTS-011 NA NA NA NA LTS-011 chr12 54813256 54852745 39490 * GTSF1 NA 0 NA 0.571 1 NA NA NA NA NA LTS-011 chr12 54852746 55423669 570924 * c(DCD, MUCL1, GTSF1, NCKAP1L, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.3425499904744 12 0.205776338569699 0.659574126029395 659 0.363013759003208 1 1 0 -6.75536513338443 LTS-011 chr12 55423670 55523422 99753 * NEUROD4 NA 0 NA 0.5 1 NA NA NA NA NA LTS-011 chr12 55523423 56031197 507775 * c(OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2) 0.451 1 NA 0.4375382343064 434 0.260295688122078 0 0 0 -5.80335462150567 LTS-011 chr12 56031198 56031273 76 * OR10P1 0.405 1 NA 1.773 1 NA NA NA NA NA LTS-011 chr12 56031274 56495925 464652 * c(BLOC1S1-RDH5, CDK2, GDF11, OR10P1, DGKA, METTL7B, ERBB3, BLOC1S1, ORMDL2, ITGA7, MMP19, RAB5B, RDH5, RPS26, IKZF4, PMEL, SUOX, PYM1, SARNP, DNAJC14, CD63) 0.405234609344057 19 0.141628704924106 0.882141711326049 1551 0.413581470777157 2 1 1 -6.74400651261063 LTS-011 chr12 56495926 56495988 63 * ERBB3 NA 0 NA 1.258 1 NA NA NA NA NA LTS-011 chr12 56495989 56558551 62563 * c(MYL6B, ERBB3, ESYT1, MYL6, PA2G4, RPL41, SMARCC2, ZC3H10) 0.4345238376841 2 0.0183847763108503 1.10210818920567 476 0.512639454935243 4 2 2 -8.16778890782521 LTS-011 chr12 56558552 56719292 160741 * c(RNF41, CNPY2, CS, ANKRD52, SLC39A5, SMARCC2, NABP2, COQ10A, PAN2) 0.376750967589414 5 0.200427044083377 0.797359454511222 835 0.366555241292217 2 1 1 -6.74308748715683 LTS-011 chr12 56719293 56742547 23255 * c(IL23A, STAT2, PAN2) 0 1 NA 0.954319007344762 123 0.552210564848375 3 3 0 -5.76461727486767 LTS-011 chr12 56742548 56882060 139513 * c(GLS2, SPRYD4, APOF, MIP, STAT2, TIMELESS) 0 2 0 0.817539614488495 434 0.479233218189393 0 0 0 -Inf LTS-011 chr12 56882061 57039880 157820 * c(BAZ2A, SNORD59A, GLS2, ATP5B, RBMS2, SNORD59B) 0.262945416945608 3 0.0633166644731069 2.00390370417217 418 0.84261042140532 9 7 2 -6.74562371855129 LTS-011 chr12 57039881 57057101 17221 * character(0) NA 0 NA 1.218 1 NA NA NA NA NA LTS-011 chr12 57057102 58026198 969097 * c(MIR1228, DCTN2, PTGES3, NXPH4, GPR182, MBD6, ARHGEF25, SDR9C7, DDIT3, DTX3, R3HDM2, NEMP1, STAC3, B4GALNT1, GLI1, INHBC, KIF5A, LRP1, MARS, MYO1A, NAB2, NACA, PRIM1, NDUFA4L2, ARHGAP9, SHMT2, SLC26A10, STAT6, TAC3, PIP4K2C, INHBE, RDH16, HSD17B6, ZBTB39) 0.256477344546396 54 0.0802456505392548 1.50160084797732 3255 0.580151994165617 6 5 1 -6.75346497788559 LTS-011 chr12 58026199 58087654 61456 * B4GALNT1 NA 0 NA 3.832 1 NA NA NA NA NA LTS-011 chr12 58087655 58340815 253161 * c(AGAP2-AS1, LOC100506844, TSFM, CTDSP2, CDK4, AVIL, OS9, AGAP2, CYP27B1, METTL21B, MIR26A2, METTL1, TSPAN31, ATP23, MARCH9) 0.223817500723336 26 0.0954323925009823 2.38520761400015 1004 1.01013488929699 11 9 2 -6.73746383236559 LTS-011 chr12 58340816 59314301 973486 * c(LRIG3, ATP23) 0 1 NA 1.38856795337156 200 0.51149818842181 5 5 0 -5.76688028160139 LTS-011 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.477 1 NA NA NA NA NA LTS-011 chr12 59445677 62652597 3206921 * c(FAM19A2, SLC16A7) 0.319591719181374 5 0.0926752394116142 0.869505131369026 229 0.385582305803028 2 2 0 -7.14991743452072 LTS-011 chr12 62652598 62718371 65774 * c(FAM19A2, USP15) 0 2 0 1.71318426530409 49 2.20667071560504 0 0 0 -Inf LTS-011 chr12 62718372 62729222 10851 * USP15 0.426 1 NA 0.851861559806284 21 0.385390791151997 2 2 0 -5.76450399654804 LTS-011 chr12 62729223 63359355 630133 * c(MON2, LINC01465, MIRLET7I, PPM1H, USP15) 0.363715837969388 12 0.05939256917096 1.44992614204767 607 0.622670016624666 6 4 2 -6.74825712593388 LTS-011 chr12 63359356 63359490 135 * character(0) NA 0 NA 0.9 1 NA NA NA NA NA LTS-011 chr12 63359491 64013761 654271 * c(DPY19L2, AVPR1A) 0.34231667408693 6 0.0496897038295326 0.778115657192914 119 0.313923191430988 1 1 0 -7.03331466845626 LTS-011 chr12 64013762 64041101 27340 * DPY19L2 NA 0 NA 1.416 1 NA NA NA NA NA LTS-011 chr12 64041102 66725414 2684313 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, FLJ41278, TMBIM4, SRGAP1, MIR548C, HMGA2, LLPH, HELB) 0.319805084053056 38 0.0885145148868899 1.26458833500571 2459 0.626943209432817 4 3 1 -6.74226028821128 LTS-011 chr12 66725415 66731767 6353 * HELB NA 0 NA 0.926 1 NA NA NA NA NA LTS-011 chr12 66731768 71979999 5248232 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, RAB3IP, CPM, BEST3, GRIP1, KCNMB4, IFNG, LRRC10, LYZ, MDM2, CNOT2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, PTPRB, PTPRR, RAP1B, TSPAN8, YEATS4, DYRK2, LGR5, HELB) 0.293683584736382 87 0.131373373933898 1.14003826340598 3399 0.624607593113367 4 3 1 -6.81917327249729 LTS-011 chr12 71980000 71980005 6 * LGR5 NA 0 NA 1.803 1 NA NA NA NA NA LTS-011 chr12 71980006 72312323 332318 * c(ZFC3H1, RAB21, TMEM19, TBC1D15, MRS2P2, THAP2, LGR5) 0.249359136867185 6 0.128697189816509 1.48671448257164 674 0.670802249824874 6 5 1 -6.73750547213465 LTS-011 chr12 72312324 73059289 746966 * c(TPH2, TRHDE-AS1, TRHDE, TBC1D15) 0.236756849103906 7 0.126283694230773 1.0548458616894 331 0.44091010712736 3 3 0 -6.79722531323588 LTS-011 chr12 73059290 74935251 1875962 * c(LOC100507377, TRHDE, ATXN7L3B) NA 0 NA 1.71469058332138 79 0.434944864756585 6 NA NA -5.77526052322693 LTS-011 chr12 74935252 75433831 498580 * character(0) NA 0 NA 0.847 1 NA NA NA NA NA LTS-011 chr12 75433832 75715357 281526 * c(KCNC2, CAPS2) 0.295836459007949 7 0.136898293843068 0.847758017517934 222 0.496832857738697 2 2 0 -6.8138472361399 LTS-011 chr12 75715358 75716731 1374 * CAPS2 NA 0 NA 1.414 1 NA NA NA NA NA LTS-011 chr12 75716732 80601944 4885213 * c(MIR1252, GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, PPP1R12A, NAP1L1, PAWR, SYT1, BBS10, CAPS2, NAV3) 0.310098996310731 32 0.112220980155659 1.25507336472768 2216 0.696745604028219 4 3 1 -6.75188471485081 LTS-011 chr12 80601945 80602043 99 * character(0) NA 0 NA 1.133 1 NA NA NA NA NA LTS-011 chr12 80602044 88423107 7821064 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, NTS, SLC6A15, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, RASSF9) 0.299045330410386 37 0.136546970215655 1.10873246949942 2111 0.536111441220635 4 3 1 -6.92686987381346 LTS-011 chr12 88423108 88592098 168991 * c(TMTC3, C12orf50, CEP290, C12orf29) 0.145005067017882 2 0.202232539419353 1.82696988835014 516 0.886710914489986 5 5 0 -6.74094231478024 LTS-011 chr12 88592099 89813936 1221838 * c(TMTC3, DUSP6, POC1B, KITLG, LOC728084) NA 0 NA 1.66191860201606 208 0.628212671421961 6 NA NA -5.76465505693417 LTS-011 chr12 89813937 89853408 39472 * POC1B 0.472 1 NA 1.07613057170326 35 0.347296715221094 3 3 0 -5.76495838213734 LTS-011 chr12 89853409 93793115 3939707 * c(POC1B-GALNT4, KERA, NUDT4, DCN, EPYC, CCER1, LINC01619, POC1B, LINC00936, C12orf74, LUM, LINC00615, PLEKHG7, ATP2B1, CLLU1OS, CLLU1, LOC643339, BTG1, EEA1, GALNT4) 0.384452805065603 27 0.143684166146238 1.05538348721373 1342 0.677061651032187 3 2 1 -6.73914302073125 LTS-011 chr12 93793116 93795573 2458 * NUDT4 NA 0 NA 0.528998731675805 68 0.340634480037389 1 NA NA -5.76464439655139 LTS-011 chr12 93795574 99166995 5371422 * c(TMPO-AS1, PGAM1P5, MIR1251, MIR4303, MIR3685, MIR5700, PLXNC1, METAP2, NUDT4, CCDC38, NEDD1, SLC9A7P1, IKBIP, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, RMST, ELK3, MRPL42, HAL, APAF1, LTA4H, MIR135A2, MIR331, CEP83, CDK17, SLC25A3, VEZT, FGD6, NDUFA12, ANKS1B, TMCC3, NTN4, LOC643711, LOC643770, SNRPF, SNORA53, TMPO, NR2C1, UBE2N, USP44, CRADD, SOCS2) 0.370652972575748 76 0.111638642464104 0.980153259167584 3682 0.471049059934532 3 2 1 -6.76186072883895 LTS-011 chr12 99166996 102091729 2924734 * c(MIR1827, DEPDC4, SPIC, ANO4, SLC5A8, FAM71C, UHRF1BP1L, SLC17A8, UTP20, GAS2L3, ARL1, MYBPC1, GOLGA2P5, SCYL2, ANKS1B, CHPT1, ACTR6, NR1H4) 0.369053487791705 42 0.132438875520479 0.845958956977003 1902 0.377959048807056 2 1 1 -6.78966140283656 LTS-011 chr12 102091730 102872451 780722 * c(IGF1, SYCP3, CCDC53, PMCH, PARPBP, DRAM1, CHPT1, NUP37, GNPTAB) 0.419383544914204 14 0.0664779976821217 1.04187091095156 841 0.539843243082739 4 2 2 -6.81532018382611 LTS-011 chr12 102872452 102874063 1612 * IGF1 NA 0 NA 0.609 1 NA NA NA NA NA LTS-011 chr12 102874064 104123999 1249936 * c(LINC00485, IGF1, C12orf42, ASCL1, PAH, STAB2) 0.339962958529221 12 0.173690141204143 0.74386497160517 516 0.410596048629485 2 1 1 -6.84472380492772 LTS-011 chr12 104124000 104124061 62 * STAB2 0.415 1 NA 1.509 1 NA NA NA NA NA LTS-011 chr12 104124062 106763484 2639423 * c(MIR3652, MIR3922, CKAP4, C12orf45, ALDH1L2, KIAA1033, TTC41P, TCP11L2, HCFC2, C12orf75, NFYB, EID3, CHST11, NT5DC3, APPL2, STAB2, POLR3B, TDG, HSP90B1, C12orf73, TXNRD1, GLT8D2, SLC41A2, NUAK1) 0.39172455232354 68 0.104164391078451 0.987844241017573 2477 0.565945434034259 3 2 1 -6.74484780826591 LTS-011 chr12 106763485 106770137 6653 * POLR3B NA 0 NA 0.645 1 NA NA NA NA NA LTS-011 chr12 106770138 108913578 2143441 * c(LOC100287944, LOC100505978, PRDM4, PWP1, FICD, ASCL4, BTBD11, CMKLR1, CRY1, RIC8B, POLR3B, RFX4, LOC728739, MTERF2, TMEM263, WSCD2) 0.384764725958188 44 0.120854279489954 0.851758357438471 1417 0.4845525561758 2 1 1 -6.75735872406226 LTS-011 chr12 108913579 109246498 332920 * c(ISCU, CORO1C, TMEM119, SSH1, SELPLG, SART3) 0.384409770362471 15 0.154002164486953 1.16735275288069 714 0.46969459279542 4 2 2 -6.74349737418901 LTS-011 chr12 109246499 109895920 649422 * c(USP30-AS1, ALKBH2, FOXN4, DAO, MYO1H, ACACB, SSH1, SVOP, UNG, KCTD10, USP30) 0.343293840078384 17 0.167752750481528 0.95412023740581 1194 0.58900174261647 3 2 1 -6.76808513762308 LTS-011 chr12 109895921 109896040 120 * KCTD10 NA 0 NA 2.063 1 NA NA NA NA NA LTS-011 chr12 109896041 109915420 19380 * KCTD10 NA 0 NA 1.90269229036523 63 1.68192772937506 7 NA NA -5.76441333351299 LTS-011 chr12 109915421 109921267 5847 * UBE3B NA 0 NA 1.022 1 NA NA NA NA NA LTS-011 chr12 109921268 111884608 1963341 * c(LINC01405, SH2B3, MIR4497, ARPC3, RAD9B, FAM109A, PPTC7, CCDC63, CUX2, IFT81, FAM216A, MMAB, C12orf76, MVK, MYL2, ATP2A2, GPN3, GLTP, ANAPC7, VPS29, PPP1CC, TRPV4, TCTN1, TCHP, HVCN1, FAM222A, FAM222A-AS1, ANKRD13A, UBE3B, GIT2) 0.383684428734085 24 0.103556529056091 0.930310922000788 2830 0.415766488605963 3 2 1 -6.79155161162755 LTS-011 chr12 111884609 111949546 64938 * c(SH2B3, ATXN2) 0 1 NA 0.966329289544513 242 0.42882636465947 3 3 0 -5.76504584102885 LTS-011 chr12 111949547 112846754 897208 * c(TRAFD1, ERP29, ALDH2, HECTD4, MAPKAPK5-AS1, RPL6, ATXN2, NAA25, ACAD10, BRAP, MAPKAPK5, ADAM1A, TMEM116) 0 5 0 0.91885774703336 1602 0.461375516827016 0 0 0 -Inf LTS-011 chr12 112846755 113495840 649086 * c(DTX1, RPH3A, OAS1, OAS2, OAS3, PTPN11, RPL6) 0.328582627212497 7 0.222892137057153 0.769335133326537 673 0.377227619786472 2 1 1 -6.80650165019161 LTS-011 chr12 113495841 113876048 380208 * c(SDS, SDSL, IQCD, DTX1, PLBD2, CFAP73, TPCN1, DDX54, SLC8B1, RASAL1, RITA1) 0.202402533190842 5 0.207976681385198 0.988920662387071 993 0.451479920821419 3 3 0 -6.7347117873478 LTS-011 chr12 113876049 113900058 24010 * SDSL 0.315 1 NA 1.2232881790602 7 0.711956191803694 4 4 0 -5.76441058022846 LTS-011 chr12 113900059 117628334 3728276 * c(LINC00173, MIR4472-2, FBXO21, MED13L, TBX5-AS1, FBXW8, TESC, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, C12orf49, RNFT2, HRK, RBM19) 0.355365265000097 22 0.124448080239611 1.02693080108117 1312 0.525064360941601 3 2 1 -6.75840781756981 LTS-011 chr12 117628335 117628337 3 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-011 chr12 117628338 117769204 140867 * NOS1 0.335606161300499 5 0.199466287878428 0.7212673000067 311 0.335365872808089 1 1 0 -6.75703381126976 LTS-011 chr12 117769205 119658612 1889408 * c(HSPB8, KSR2, NOS1, PEBP1, TAOK3, VSIG10, WSB2, RFC5, SUDS3, SRRM4) 0.329622536360649 31 0.156198632846852 0.920430816273075 1033 0.482176691481852 3 2 1 -6.84863829786148 LTS-011 chr12 119658613 120105594 446982 * c(LINC00934, CCDC60, TMEM233) 0.329355768001502 6 0.168915856765038 0.605815508640008 172 0.391486000112001 1 1 0 -6.73321332829973 LTS-011 chr12 120105595 122497840 2392246 * c(MIR1178, PXN-AS1, NRAV, MIR4498, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, SETD1B, SIRT4, MORN3, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, PRKAB1, PSMD9, PXN, BCL7A, RPLP0, C12orf43, HNF1A, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, BICDL1, CABP1, MLEC, RNF10) 0.370103476349788 100 0.120234650630013 1.03758781143294 4000 0.477948747619803 3 2 1 -6.73951394349249 LTS-011 chr12 122497841 123094070 596230 * c(CLIP1-AS1, MLXIP, LRRC43, IL31, ZCCHC8, DIABLO, BCL7A, CLIP1, VPS33A, RSRC2, B3GNT4, KNTC1) 0.311392297979078 24 0.104094847705545 1.62136143964468 1274 0.745565705110337 7 5 2 -6.76160893676703 LTS-011 chr12 123094071 123095364 1294 * KNTC1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-011 chr12 123095365 123201283 105919 * c(HCAR2, HCAR3, KNTC1) 0.354919190980495 11 0.0668496277272561 1.03360634035294 192 0.577386042426069 6 4 2 -6.78515979107175 LTS-011 chr12 123201284 123201291 8 * HCAR3 0.359 1 NA 2.873 1 NA NA NA NA NA LTS-011 chr12 123201292 123468609 267318 * c(ABCB9, HCAR1, ARL6IP4, PITPNM2, OGFOD2, VPS37B, CCDC62, DENR, HCAR3, HIP1R) 0.359064230874407 2 0.0148492424049176 1.84542823039043 776 0.677186753146069 9 6 3 -6.78131385825448 LTS-011 chr12 123468610 123519112 50503 * c(MIR4304, PITPNM2) 0.305025564141158 2 0.0254558441227157 1.49607378177446 184 0.363392793223511 8 6 2 -6.80310179168524 LTS-011 chr12 123519113 123686931 167819 * c(LOC100507091, MPHOSPH9, PITPNM2) NA 0 NA 1.30637699053279 127 0.535299825693112 4 NA NA -5.76574996877412 LTS-011 chr12 123686932 123687145 214 * MPHOSPH9 NA 0 NA 0.856 1 NA NA NA NA NA LTS-011 chr12 123687146 123892186 205041 * c(MPHOSPH9, KMT5A, SBNO1, CDK2AP1, C12orf65) 0.262 1 NA 0.916485124854314 335 0.420084111014814 3 3 0 -5.77249114232008 LTS-011 chr12 123892187 124825235 933049 * c(MIR3908, ZNF664-FAM101A, TMED2, SNRNP35, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, RILPL1, KMT5A, DDX55, TCTN2, CCDC92, NCOR2) 0.19809946598369 58 0.0727940518633965 0.897751371212874 1701 0.418248424003753 3 3 0 -6.78580039971833 LTS-011 chr12 124825236 125478552 653317 * c(MIR5188, BRI3BP, DHX37, UBC, SCARB1, NCOR2) 0.194984019983217 34 0.0598397146036833 1.24231107793662 564 0.601212279811899 3 3 0 -6.77478139563934 LTS-011 chr12 125478553 125497062 18510 * BRI3BP NA 0 NA 0.606 1 NA NA NA NA NA LTS-011 chr12 125497063 129338218 3841156 * c(LOC100128554, MIR3612, LINC00943, LINC00507, TMEM132B, SLC15A4, BRI3BP, GLT1D1, LINC00944, LINC00939, FLJ37505, LOC440117, AACS, TMEM132C) 0.199721540796643 26 0.103580314435039 0.79355060581603 848 0.489830860026052 2 2 0 -6.85444597812026 LTS-011 chr12 129338219 131275253 1937035 * c(LOC100190940, FZD10, TMEM132D, GLT1D1, STX2, RIMBP2, FZD10-AS1, PIWIL1) 0.262907405416055 12 0.0916932881453659 0.604586655512831 682 0.235340584170477 1 1 0 -7.00786331038031 LTS-011 chr12 131275254 133677671 2402418 * c(LOC100130238, ZNF605, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, ZNF140, NOC4L, PUS1, ULK1) 0.252611788775917 81 0.0889371310061492 0.778685531759013 3271 0.4086968937233 2 2 0 -6.75304336914573 LTS-011 chr12 133677672 133682088 4417 * ZNF140 NA 0 NA 0.559 1 NA NA NA NA NA LTS-011 chr12 133682089 133808129 126041 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.242253887470338 15 0.109921053921613 0.556072257051694 409 0.313159158098519 2 2 0 -6.84307064745362 LTS-011 chr12 133808130 133812708 4579 * ANHX NA 0 NA 0.453854221811649 43 0.127141992979257 0 NA NA -5.76727947860675 LTS-011 chr13 19271620 19753686 482067 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.404 1 NA 0.802183439196877 39 0.361993502077812 2 2 0 -5.76483109138038 LTS-011 chr13 19753687 20077443 323757 * c(ANKRD26P3, LINC00421, TUBA3C, TPTE2) 0.403088290223272 2 0.0424264068711929 0.500707711353313 113 0.36665617969526 0 0 0 -6.80743498105646 LTS-011 chr13 20077444 20207814 130371 * c(MPHOSPH8, TPTE2) NA 0 NA 2.124 1 NA NA NA NA NA LTS-011 chr13 20207815 25264652 5056838 * c(MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5) 0.3672080186607 78 0.0988168435276525 0.940475551053763 2880 0.474326716663509 3 2 1 -6.83357957893223 LTS-011 chr13 25264653 25486911 222259 * c(ATP12A, CENPJ, RNF17) 0.311488971083074 10 0.174568070136297 0.768145154676384 405 0.528919530826033 1 1 0 -6.76410627576619 LTS-011 chr13 25486912 25487074 163 * CENPJ NA 0 NA 0.662292889745865 4 0.0613704597777573 1 NA NA -5.76461423397744 LTS-011 chr13 25487075 25716002 228928 * c(PABPC3, CENPJ, TPTE2P1) 0 1 NA 0.560193286987204 115 0.428331925370244 1 1 0 -5.76901943482093 LTS-011 chr13 25716003 25746320 30318 * AMER2 0.170709571765667 5 0.164415023644435 0.591742109533586 221 0.519173901366527 3 3 0 -6.76724182069885 LTS-011 chr13 25746321 26542783 796463 * c(ATP8A2, MTMR6, NUP58) 0.169230575440757 7 0.19675619431164 0.900591096672672 635 0.490910235517452 3 3 0 -6.77509514562989 LTS-011 chr13 26542784 26586605 43822 * ATP8A2 0.359 1 NA 1.25448815313636 5 0.392555346416273 4 4 0 -5.76448700256817 LTS-011 chr13 26586606 29855822 3269217 * c(PAN3-AS1, CDK8, CDX2, WASF3, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, MTUS2, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, PDX1, RASL11A, SHISA2, ATP5EP2, POLR1D, POMP, ATP8A2, RNF6, RPL21, SNORA27, URAD) 0.349044224587672 48 0.13074640469407 0.906226838524527 1933 0.508972174669522 3 2 1 -6.87369882424971 LTS-011 chr13 29855823 30086497 230675 * c(MTUS2-AS1, MTUS2, SLC7A1) 0.403 1 NA 1.01786710940776 139 0.363523276643835 3 3 0 -5.76441845532077 LTS-011 chr13 30086498 32376378 2289881 * c(LINC00426, TEX26-AS1, LINC00297, LINC00398, USPL1, HSPH1, RXFP2, TEX26, B3GLCT, ALOX5AP, HMGB1, LINC00544, UBL3, SLC7A1, KATNAL1, MEDAG) 0.438229239659259 19 0.0345423716411669 0.979184615143637 1032 0.532367560257592 2 1 1 -7.48152353835065 LTS-011 chr13 32376379 35926457 3550079 * c(MINOS1P1, LINC00423, LINC00457, STARD13-AS, FRY, N4BP2L2, N4BP2L2-IT2, RXFP2, EEF1DP3, PDS5B, NBEA, RFC3, ZAR1L, BRCA2, STARD13, N4BP2L1, KL) 0.390285402333471 20 0.0822694545861022 0.647241529539461 1685 0.371692914617391 1 1 0 -7.14091980064608 LTS-011 chr13 35926458 36006375 79918 * NBEA NA 0 NA 0.394 1 NA NA NA NA NA LTS-011 chr13 36006376 37524184 1517809 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, SPG20, NBEA, ALG5, SERTM1, SMAD9, SOHLH2, RFXAP, CCDC169, CCNA1, DCLK1) 0.389984170795654 12 0.0925854232914696 0.536334059653442 999 0.241273784155437 1 1 0 -7.22776065017934 LTS-011 chr13 37524185 37526536 2352 * ALG5 NA 0 NA 0.839 1 NA NA NA NA NA LTS-011 chr13 37526537 37622703 96167 * c(EXOSC8, ALG5, SUPT20H) 0.346877970126354 3 0.083512474118142 0.832493415536539 215 0.36501884729217 1 1 0 -6.81226616757419 LTS-011 chr13 37622704 38357541 734838 * c(POSTN, CSNK1A1L, LINC00547, SUPT20H, TRPC4) 0.347008440471473 12 0.0822969493893175 0.510062531677294 275 0.218534667689325 1 1 0 -7.03252097132033 LTS-011 chr13 38924001 38937143 13143 * UFM1 NA 0 NA 0.904746698433451 95 0.341850183946532 2 NA NA -5.76517545730634 LTS-011 chr13 38937144 39261176 324033 * c(LINC00366, FREM2) NA 0 NA 0.516 1 NA NA NA NA NA LTS-011 chr13 39261177 39588530 327354 * c(STOML3, FREM2, PROSER1) 0.297208742589148 4 0.194026415727344 0.478308693812978 490 0.202219801121067 1 1 0 -7.00391569663356 LTS-011 chr13 39588531 40293507 704977 * c(MIR4305, LHFP, NHLRC3, COG6, PROSER1) NA 0 NA 0.893754317674768 269 0.413952450301056 2 NA NA -5.786273152063 LTS-011 chr13 40293508 40293795 288 * COG6 NA 0 NA 0.567 1 NA NA NA NA NA LTS-011 chr13 40293796 44971822 4678027 * c(MIR320D1, OR7E37P, VWA8-AS1, TPTE2P5, MIR5006, LINC00332, SMIM2-IT1, SLC25A15, MRPS31, WBP4, AKAP11, LINC00284, FAM216B, LACC1, DGKH, CCDC122, ELF1, VWA8, FOXO1, SUGT1P3, RGCC, DNAJC15, SERP2, LINC00548, ENOX1, COG6, LINC00598, MIR621, NAA16, KBTBD7, TNFSF11, KBTBD6, EPSTI1, MTRF1) 0.317006495514396 37 0.116150195298449 0.667753702119494 2054 0.402128285776374 1 1 0 -6.89643434420456 LTS-011 chr13 44971823 45007686 35864 * c(SERP2, TSC22D1) NA 0 NA 1.055 1 NA NA NA NA NA LTS-011 chr13 45007687 45513435 505749 * c(LINC00330, NUFIP1, TSC22D1-AS1, TSC22D1) 0.341990067982794 2 0.023334523779156 0.940790237828696 138 0.601594095094276 4 3 1 -6.98730148001414 LTS-011 chr13 45513436 45515258 1823 * NUFIP1 NA 0 NA 0.291283088397634 40 0.057479087612979 0 NA NA -5.79675592090373 LTS-011 chr13 45515259 52425641 6910383 * c(LINC00462, TPT1-AS1, MIR3613, CPB2-AS1, MIR4703, MIR5693, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, LPAR6, TRIM13, DLEU1, RCBTB2, ARL11, WDFY2, CPB2, ST13P4, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, ZC3H13, LRCH1, SLC25A30, INTS6, NUFIP1, SIAH3, KCNRG, LINC00282, MLNR, MED4, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, LCP1, MIR16-1, PHF11, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, NA NA NA NA NA NA NA NA NA LTS-011 RB1, LINC00371, SERPINE3, SNORA31, TPT1, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, COG3, SETDB2, EBPL, SUCLA2, DLEU2, ITM2B) 0.332428307096916 93 0.0958561334342803 0.635599229745543 4178 0.399930953173724 1 1 0 -6.79403276541884 LTS-011 NA NA NA NA LTS-011 chr13 52425642 52439384 13743 * CCDC70 NA 0 NA 0.325 1 NA NA NA NA NA LTS-011 chr13 52439385 52951729 512345 * c(MRPS31P5, NEK5, ALG11, NEK3, ATP7B, THSD1, CCDC70, UTP14C) 0.327090284700955 4 0.227580571812856 0.528299389078198 585 0.307774959526072 1 1 0 -6.7934339162182 LTS-011 chr13 52951730 52951833 104 * THSD1 NA 0 NA 0.756 1 NA NA NA NA NA LTS-011 chr13 52951834 72013895 19062062 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, LINC00348, OLFM4, SUGT1, LECT1, HNRNPA1L2, DACH1, TPTE2P3, CKAP2, PCDH17, OR7E156P, LINC00550, PCDH8, PCDH9, VPS36, THSD1, KLHL1, ATXN8OS, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3) 0.32203452739972 21 0.150560729718387 0.868609882682981 1399 0.442828926137919 2 2 0 -7.12578266342784 LTS-011 chr13 72013896 72013994 99 * DACH1 NA 0 NA 0.9 1 NA NA NA NA NA LTS-011 chr13 72013995 74339190 2325196 * c(PIBF1, KLF12, DACH1, DIS3, MZT1, KLF5, BORA) 0.342812944633962 14 0.109630573460886 1.15396422450768 817 0.507766079251923 4 3 1 -6.76422744356411 LTS-011 chr13 74339191 74387287 48097 * KLF12 NA 0 NA 0.711 1 NA NA NA NA NA LTS-011 chr13 74387288 77167735 2780448 * c(LINC00381, KLF12, COMMD6, LINC00347, LMO7, CTAGE11P, LMO7DN, UCHL3, TBC1D4) 0.317875610744834 20 0.106068237718139 0.672762195933898 665 0.299185017125399 1 1 0 -6.93424343948848 LTS-011 chr13 77167736 77454277 286542 * character(0) NA 0 NA 1.321 1 NA NA NA NA NA LTS-011 chr13 77454278 78173441 719164 * c(MYCBP2-AS1, KCTD12, CLN5, MYCBP2, FBXL3, BTF3P11, ACOD1, SCEL) 0.273442420588129 7 0.18165902124585 1.08378533859796 879 0.415638001083986 4 3 1 -6.8263635287744 LTS-011 chr13 78173442 78188078 14637 * SCEL 0.465 1 NA 0.804365253338739 53 0.213808851462505 2 2 0 -5.76443377834425 LTS-011 chr13 78188079 84454206 6266128 * c(MIR3665, RBM26-AS1, LINC00331, LINC00446, NDFIP2-AS1, RNF219-AS1, SPRY2, SLITRK1, SLAIN1, EDNRB, POU4F1, NDFIP2, RBM26, RNF219, SCEL) 0.383353869897256 9 0.146059158486477 0.993797905066132 775 0.463339242326869 3 2 1 -6.74570899959624 LTS-011 chr13 84454207 95121368 10667162 * c(MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00559, SLITRK1, LINC00410, DCT, GPC5, SLITRK5, MIR19B1, MIR17HG, MIR4500HG, MIR622, SLITRK6) 0.395770571107505 5 0.0483063142870577 0.774742585062867 478 0.332501191118744 2 1 1 -6.87795759289232 LTS-011 chr13 95121369 95131240 9872 * DCT NA 0 NA 0.961 1 NA NA NA NA NA LTS-011 chr13 95131241 103346945 8215705 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR2681, MIR548AN, MIR4705, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, ABCC4, SOX21, RNF113B, GPR180, DCT, CLYBL, GPR183, METTL21C, FGF14, DZIP1, DOCK9, TGDS, NALCN, HS6ST3, OXGR1, FGF14-IT1, FGF14-AS2, GPR18, UBAC2, IPO5, PCCA, UGGT2, DNAJC3, RAP2A, SLC15A1, MIR623, TPP2, ZIC2, STK24, TMTC4, ZIC5, GGACT, CLDN10, ITGBL1, TM9SF2) 0.375325179559228 61 0.116243295828777 1.02170707454908 3664 0.488836225809674 3 2 1 -6.73440952074041 LTS-011 chr13 103346946 103381766 34821 * CCDC168 NA 0 NA 0.584 1 NA NA NA NA NA LTS-011 chr13 103381767 103418942 37176 * c(CCDC168, TEX30) 0.424164353072304 15 0.0499923803717936 0.654838320211469 475 0.184280646026953 2 1 1 -6.87580976084435 LTS-011 chr13 103418943 103419615 673 * TEX30 NA 0 NA 1.405 1 NA NA NA NA NA LTS-011 chr13 103419616 110407057 6987442 * c(BIVM-ERCC5, MIR548AS, LINC00443, MYO16-AS1, TNFSF13B, METTL21EP, LINC00343, EFNB2, ERCC5, MYO16, DAOA, DAOA-AS1, LINC00551, LIG4, BIVM, ARGLU1, SLC10A2, LINC00460, FAM155A, KDELC1, ABHD13, IRS2, TEX30) 0.388517388183465 22 0.102148309120989 1.00322103902779 1238 0.493090658804037 3 2 1 -6.74156060955828 LTS-011 chr13 110407058 111940789 1533732 * c(COL4A2-AS1, COL4A1, COL4A2, LINC00346, ING1, ANKRD10, RAB20, NAXD, CARS2, IRS2, ARHGEF7) 0.433289176658546 45 0.0593648792543949 1.25653352403963 1307 0.541217790683932 4 2 2 -6.8933252725088 LTS-011 chr13 111940790 112324912 384123 * c(TEX29, ARHGEF7) 0.463685430419403 2 0.0332340187157677 0.978976462704726 182 0.418139467803072 2 1 1 -8.33636906028823 LTS-011 chr13 112324913 112723105 398193 * SOX1 0 1 NA 0.839763139482694 25 0.709004525138357 2 2 0 -5.76489593192555 LTS-011 chr13 112723106 115064542 2341437 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, TUBGCP3, ADPRHL1, SPACA7, F7, F10, RASA3, ATP11A, MCF2L, GAS6, TMEM255B, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, UPF3A, SOX1, TFDP1, GRTP1, CUL4A, PROZ, CDC16) 0.285830777492986 51 0.132294113810931 0.963825644229021 2300 0.524375208575078 2 2 0 -6.93167868924859 LTS-011 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.725786114274699 89 0.27122074033854 2 NA NA -5.76740009378432 LTS-011 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.252 1 NA 0.978596834387882 5 1.16733114410608 3 3 0 -5.7650108112444 LTS-011 chr14 20201562 20404847 203286 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.313076026349728 14 0.0695887448269719 1.13207646153166 203 0.708765231781563 4 3 1 -6.76381258048657 LTS-011 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.49 1 NA NA NA NA NA LTS-011 chr14 20443534 20712010 268477 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4K15) 0.399030200255796 25 0.049451929520832 0.742084123929365 285 0.909038072713513 2 1 1 -6.73737777409951 LTS-011 chr14 20712011 20754345 42335 * character(0) NA 0 NA 4.764 1 NA NA NA NA NA LTS-011 chr14 20754346 20917530 163185 * c(SNORD126, PARP2, KLHL33, OSGEP, CCNB1IP1, TEP1, RPPH1, TTC5) 0.416357052943153 34 0.0438831295062062 1.13904299042168 760 0.453471743494847 4 2 2 -6.79620709364287 LTS-011 chr14 20917531 20919554 2024 * OSGEP 0 1 NA 3.11 1 NA NA NA NA NA LTS-011 chr14 20919555 20943367 23813 * c(APEX1, PNP, OSGEP, TMEM55B) 0.303424429909865 8 0.176402947821174 1.73963826501643 165 0.653012488887476 8 6 2 -6.73456611815631 LTS-011 chr14 20943368 21424644 481277 * c(EDDM3A, RNASE11, ANG, RNASE10, OR6S1, RNASE9, PNP, RNASE12, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP) 0.406664076640267 21 0.106565428147174 0.925842239668205 375 0.462587222396405 2 1 1 -6.75657615198321 LTS-011 chr14 21424645 21457919 33275 * character(0) NA 0 NA 4.214 1 NA NA NA NA NA LTS-011 chr14 21457920 21989829 531910 * c(SUPT16H, TPPP2, RNASE8, LINC00641, SLC39A2, HNRNPC, SNORD8, OR5AU1, RNASE13, ZNF219, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, SALL2, TMEM253, METTL17, SNORD9, RNASE7, RAB2B, TOX4) 0.4138558809322 36 0.0832075240798094 1.33070440576034 1634 0.623304953182318 4 2 2 -6.74975182607231 LTS-011 chr14 21989830 21989879 50 * SALL2 NA 0 NA 1.127 1 NA NA NA NA NA LTS-011 chr14 21989880 22591548 601669 * c(OR10G3, OR10G2, OR4E2, SALL2) 0.39289643740582 42 0.105944203314895 1.09826446175803 655 0.570527069805838 3 2 1 -6.74669796405348 LTS-011 chr14 22591549 22591899 351 * character(0) NA 0 NA 1.614 1 NA NA NA NA NA LTS-011 chr14 22591900 23027968 436069 * character(0) 0.425322300982751 36 0.0604620043354003 1.74286363127663 686 0.629375164541882 6 3 3 -6.82068811668491 LTS-011 chr14 23027969 23746394 718426 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.4157406942548 45 0.0781677682935876 1.44126179112057 1827 0.656260459969919 6 3 3 -6.76769410421274 LTS-011 chr14 23746395 23754980 8586 * HOMEZ NA 0 NA 3.054 1 NA NA NA NA NA LTS-011 chr14 23754981 23794818 39838 * c(BCL2L2-PABPN1, HOMEZ, BCL2L2, PABPN1, PPP1R3E) 0.424257702039853 2 0.023334523779156 2.01080091374026 194 0.939496544594301 8 4 4 -7.21996100389371 LTS-011 chr14 23794819 24550640 755822 * c(MIR208B, BCL2L2-PABPN1, DHRS2, EFS, DHRS4, CMTM5, NGDN, DHRS4L2, MIR208A, MYH6, MYH7, NRL, SLC22A17, DHRS4-AS1, IL25, DHRS4L1, THTPA, PABPN1, JPH4, ZFHX2, AP1G2, CARMIL3, CPNE6) 0.369888316734015 44 0.126285464321682 1.19982644941172 1828 0.930134182300778 3 2 1 -6.75122325787262 LTS-011 chr14 24550641 24912092 361452 * c(NEDD8-MDP1, IRF9, TM9SF1, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, IPO4, DCAF11, REC8) 0.414132233206157 32 0.116908963065974 1.56960212893446 2486 0.712676256884803 6 3 3 -6.74000356990582 LTS-011 chr14 24912093 24970725 58633 * character(0) NA 0 NA 0.965 1 NA NA NA NA NA LTS-011 chr14 24970726 25288687 317962 * c(CMA1, CTSG, STXBP6, GZMH, GZMB) 0.403215552365149 7 0.0165428735915701 1.09808603252515 243 0.425040530826118 4 2 2 -6.74785709241416 LTS-011 chr14 25288688 29247212 3958525 * c(MIR4307, LINC00645, FOXG1, STXBP6, LINC01551, NOVA1) 0 1 NA 1.27891741109912 238 0.847861293973483 4 4 0 -5.76982774163117 LTS-011 chr14 29247213 30132880 885668 * c(MIR548AI, LINC01551, PRKD1) 0.38195086203236 2 0.00141421356237306 1.32677911888577 151 0.506707770494899 3 2 1 -7.20777063424655 LTS-011 chr14 30132881 30132942 62 * c(MIR548AI, PRKD1) NA 0 NA 1.789 1 NA NA NA NA NA LTS-011 chr14 30132943 32628934 2495992 * c(LOC100506071, MIR548AI, AP4S1, DTD2, COCH, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, ARHGAP5, G2E3, PRKD1, MIR624, NUBPL, ARHGAP5-AS1) 0.254932611227088 22 0.100366913452678 1.99777242923053 1603 0.841232004487433 9 7 2 -6.78227459259095 LTS-011 chr14 32628935 32736496 107562 * character(0) NA 0 NA 0.956 1 NA NA NA NA NA LTS-011 chr14 32736497 32902898 166402 * AKAP6 NA 0 NA 1.05108115715742 110 0.438203725551909 3 NA NA -5.76485620216014 LTS-011 chr14 32902899 35786731 2883833 * c(CFL2, BAZ1A, EGLN3, SPTSSA, IGBP1P1, FAM177A1, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, AKAP6, KIAA0391) 0.25462285402028 39 0.0652889043072483 2.11239655602113 1432 1.18647600012821 10 8 2 -6.76786295068721 LTS-011 chr14 35786732 35870662 83931 * character(0) NA 0 NA 4.443 1 NA NA NA NA NA LTS-011 chr14 35870663 35873811 3149 * NFKBIA 0.33 1 NA 4.07905364471878 49 1.59361396845101 18 18 0 -5.76441025724275 LTS-011 chr14 35873812 37421441 1547630 * c(PTCSC3, LINC00609, RALGAPA1, SFTA3, NKX2-8, NFKBIA, PAX9, MBIP, NKX2-1, BRMS1L, INSM2, SLC25A21) 0.28714989252756 8 0.112413061645751 2.00088397583804 879 1.0964567346569 8 6 2 -6.73910278137069 LTS-011 chr14 37421442 37421529 88 * c(MIR4503, SLC25A21) NA 0 NA 2.35853823011119 2 0.444770165366338 9 NA NA -5.76441056537576 LTS-011 chr14 37421530 37777562 356033 * c(SLC25A21-AS1, MIR4503, MIPOL1, SLC25A21) 0 1 NA 2.31231000973547 91 1.29746924407334 9 9 0 -5.76446401876651 LTS-011 chr14 37777563 39901700 2124138 * c(LOC100288846, SEC23A, NA, TRAPPC6B, MIPOL1, CLEC14A, FBXO33, LINC00639, FOXA1, MIA2, PNN, SSTR1, GEMIN2) 0.192007740445961 31 0.0888679581091781 2.42826617021023 1312 1.24544530546931 9 8 1 -6.74726986945885 LTS-011 chr14 42355769 42882139 526371 * LRFN5 0 1 NA 1.82044264895632 65 0.993945041817628 7 7 0 -5.76449499447422 LTS-011 chr14 42882140 42997963 115824 * character(0) 0.32 1 NA 1.20074513708683 9 0.532241982351804 4 4 0 -5.76453498437426 LTS-011 chr14 42997964 45414971 2417008 * c(C14orf28, KLHL28, FSCB) NA 0 NA 1.67418339957477 182 0.678358074150536 6 NA NA -5.76552799855713 LTS-011 chr14 45414972 45432890 17919 * c(FAM179B, KLHL28) NA 0 NA 3.87710698793469 50 0.908911181085391 17 NA NA -5.76441204435344 LTS-011 chr14 45432891 47346852 1913962 * c(SNORD127, LINC00871, RPL10L, MDGA2, FKBP3, FAM179B, PRPF39, MIS18BP1, FANCM) 0.333 1 NA 2.20601257668236 720 1.21122541883395 9 9 0 -5.76495786468823 LTS-011 chr14 47346853 47351230 4378 * MDGA2 NA 0 NA 1.185 1 NA NA NA NA NA LTS-011 chr14 47351231 50360525 3009295 * c(MIR548Y, LINC00648, LRR1, KLHDC1, MDGA2, KLHDC2, ARF6, MGAT2, POLE2, DNAAF2, RPL36AL, RPS29, NEMF) 0.410951057388589 15 0.0729998043050215 1.46864980769729 774 0.612565221212002 5 3 2 -6.76425189703155 LTS-011 chr14 50360526 50360616 91 * ARF6 NA 0 NA 2.998 1 NA NA NA NA NA LTS-011 chr14 50360617 50585586 224970 * c(NA, LINC01599, LINC01588, ARF6, SOS2, VCPKMT) 0.478767950925454 3 0.0345301800362137 2.04851198123952 200 1.08293867130324 8 4 4 -8.78146070736811 LTS-011 chr14 50585587 50586945 1359 * SOS2 NA 0 NA 1.384 1 NA NA NA NA NA LTS-011 chr14 50586946 56766094 6179149 * c(KTN1-AS1, MIR4308, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, NID2, ATG14, SAMD4A, GCH1, ATP5S, GMFB, LINC00640, GPR137C, ERO1A, TBPL2, KTN1, LGALS3, ATL1, NIN, C14orf166, GNG2, FBXO34, PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL13AP3, LINC00520, GNPNAT1, BMP4, SOS2, STYX, L2HGDH, DDHD1, TMX1, CDKL1, MAPK1IP1L, DLGAP5) 0.390364423928478 75 0.132447061666706 1.35938390344846 4937 0.66323236128837 5 3 2 -6.75868730446696 LTS-011 chr14 56766095 57046829 280735 * c(TMEM260, PELI2) 0.257 1 NA 1.61750939826007 71 0.557555357484761 6 6 0 -5.76454203378162 LTS-011 chr14 57046830 57084113 37284 * TMEM260 0.31125225611479 2 0.0318198051533946 1.15457547789616 45 0.390033774761296 11 8 3 -6.85430253732686 LTS-011 chr14 57084114 57085235 1122 * TMEM260 NA 0 NA 0.902 1 NA NA NA NA NA LTS-011 chr14 57085236 58606161 1520926 * c(OTX2-AS1, EXOC5, NAA30, C14orf37, SLC35F4, OTX2, TMEM260, C14orf105, AP5M1) 0.206123550665997 8 0.128939354515435 0.707596043998389 867 0.382147616176347 2 2 0 -6.90765242311963 LTS-011 chr14 58606162 58666885 60724 * c(C14orf37, ACTR10) NA 0 NA 1.185 1 NA NA NA NA NA LTS-011 chr14 58666886 60865195 2198310 * c(L3HYPDH, C14orf37, DAAM1, TIMM9, LRRC9, PSMA3-AS1, TOMM20L, DACT1, JKAMP, DHRS7, PPM1A, ACTR10, PSMA3, ARID4A, RTN1, PCNX4, GPR135, CCDC175, KIAA0586) 0.287027874046689 42 0.0784931993621688 0.839093615997952 1897 0.368303437000348 2 2 0 -6.90490318937298 LTS-011 chr14 60865196 60867038 1843 * character(0) NA 0 NA 0.266556965892927 43 0.108611150715756 0 NA NA -5.77952842402543 LTS-011 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.703 1 NA NA NA NA NA LTS-011 chr14 60899979 62263020 1363042 * c(HIF1A-AS2, SLC38A6, TMEM30B, HIF1A, C14orf39, FLJ22447, MNAT1, SIX6, SIX4, PRKCH, TRMT5, SIX1, SNAPC1) 0.197763044092381 13 0.149164811620037 0.876906874145959 1165 0.438881497970633 2 2 0 -6.81812990308074 LTS-011 chr14 62263021 62263072 52 * SNAPC1 0.405 1 NA 0.502 1 NA NA NA NA NA LTS-011 chr14 62263073 63483727 1220655 * c(KCNH5, LINC00643, SNAPC1, SYT16) 0.17889088278914 5 0.106880774697791 0.582740160992076 208 0.42439522230986 2 2 0 -7.37931868362598 LTS-011 chr14 63483728 63511746 28019 * KCNH5 NA 0 NA 0.736 1 NA NA NA NA NA LTS-011 chr14 63511747 64749797 1238051 * c(WDR89, GPHB5, ESR2, SYNE2, KCNH5, PPP2R5E, RHOJ, SGPP1) 0.150151332795518 4 0.157918491634134 0.763435789203282 1303 0.302968326682318 2 2 0 -6.9769727856384 LTS-011 chr14 64749798 64804828 55031 * ESR2 NA 0 NA 1.864 1 NA NA NA NA NA LTS-011 chr14 64804829 65233552 428724 * c(PPP1R36, ESR2, ZBTB1, PLEKHG3, HSPA2, TEX21P, MTHFD1, SPTB, ZBTB25, AKAP5) 0.221511182565314 2 0.0155563491861041 0.979506478742362 787 0.447180469739564 7 6 1 -7.21521759077249 LTS-011 chr14 65233553 65233909 357 * SPTB NA 0 NA 0.475 1 NA NA NA NA NA LTS-011 chr14 65233910 68274647 3040738 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, FAM71D, TMEM229B, EIF2S1, FNTB, ZFYVE26, FUT8, PLEK2, GPX2, RAB15, ARG2, MAX, LINC00238, RDH11, ATP6V1D, PIGH, PLEKHH1, MPP5, FUT8-AS1, SPTB, CHURC1) 0.244110140122574 48 0.108502865847696 0.77349857486256 2321 0.43018568642895 2 2 0 -6.75791239864565 LTS-011 chr14 68274648 68275857 1210 * ZFYVE26 NA 0 NA 1.025 1 NA NA NA NA NA LTS-011 chr14 68275858 69254445 978588 * c(ZFYVE26, RAD51B, ZFP36L1) 0.273433466040876 3 0.0769696910045333 1.03346089091491 165 0.46166678743051 2 2 0 -6.96435323951227 LTS-011 chr14 69254446 69263026 8581 * ZFP36L1 0.302759602015483 6 0.0545734978415958 1.81037434969514 131 1.3860479832464 11 8 3 -6.7350835739194 LTS-011 chr14 69263027 69328510 65484 * character(0) NA 0 NA 0.597 1 NA NA NA NA NA LTS-011 chr14 69328511 70245969 917459 * c(LOC100289511, ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SRSF5, SLC10A1, ACTN1, DCAF5, SUSD6) 0.26778974023842 20 0.067120061319839 0.99364540488584 962 0.524510150760811 2 2 0 -6.87691149146937 LTS-011 chr14 70245970 71051664 805695 * c(MED6, SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SMOC1, SLC8A3, SLC10A1, ADAM21, ADAM20) 0.232799243812124 17 0.138063497752899 0.608509422031711 624 0.40813016868922 2 2 0 -6.97306793370052 LTS-011 chr14 71051665 71052328 664 * MED6 NA 0 NA 1.374 1 NA NA NA NA NA LTS-011 chr14 71052329 73989983 2937655 * c(MED6, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, SNORD56B, HEATR4, MAP3K9, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, PAPLN, RGS6) 0.236972140864462 41 0.111093643206871 0.776295816743415 2179 0.368741237815391 2 2 0 -6.76470507757348 LTS-011 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.006 1 NA NA NA NA NA LTS-011 chr14 74003792 74010468 6677 * c(HEATR4, ACOT1) NA 0 NA 0.126587938855131 40 0.189699315044112 0 NA NA -5.90735530898086 LTS-011 chr14 74010469 74010484 16 * c(HEATR4, ACOT1) NA 0 NA 0.125 1 NA NA NA NA NA LTS-011 chr14 74010485 74164072 153588 * c(ACOT2, ACOT4, HEATR4, ACOT1, ACOT6, DNAL1) 0.290959893910391 5 0.0599683249724386 0.591872466640808 200 0.473436892155936 1 1 0 -6.93583210657309 LTS-011 chr14 74164073 74358598 194526 * c(MIR4505, PTGR2, ZNF410, DNAL1, ELMSAN1, PNMA1) 0.269702147264305 17 0.055909262097038 1.04306534090813 343 0.373093689686413 5 4 1 -6.8524903941412 LTS-011 chr14 74358599 74358612 14 * ZNF410 NA 0 NA 0.702 1 NA NA NA NA NA LTS-011 chr14 74358613 74947086 588474 * c(MIR4709, NPC2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.245848175482998 33 0.0930756148287916 0.636991954628032 1135 0.668075099990449 2 2 0 -6.77991429698072 LTS-011 chr14 74947087 75590958 643872 * c(NPC2, ISCA2, DLST, MLH3, PROX2, LTBP2, FCF1, PGF, YLPM1, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1, AREL1) 0.291809651657986 24 0.0761114624097115 0.88704994451597 1624 0.336069957314568 2 2 0 -6.97181218994665 LTS-011 chr14 75590959 75593466 2508 * NEK9 NA 0 NA 1.507 1 NA NA NA NA NA LTS-011 chr14 75593467 75937038 343572 * c(TMED10, JDP2, FOS, LINC01220, NEK9) 0.234758597278972 9 0.048260001841875 1.24383819044545 245 0.619939113879769 6 5 1 -6.8199856168505 LTS-011 chr14 75937039 77583653 1646615 * c(BATF, C14orf1, IFT43, JDP2, LRRC74A, ESRRB, VASH1, TTLL5, ANGEL1, FLVCR2, GPATCH2L, IRF2BPL, TGFB3, CIPC) 0.247490579992551 27 0.0848990350583925 0.863009070997733 1462 0.50369149500331 2 2 0 -6.74697098127599 LTS-011 chr14 77583654 81611952 4028299 * c(MIR1260A, DIO2-AS1, AHSA1, NOXRED1, ISM2, CEP128, SAMD15, DIO2, SNW1, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, ADCK1, TMEM63C, NGB, VIPAS39, TSHR, SLIRP, ALKBH1, NRXN3, SPTLC2) 0.243240630078741 66 0.0832931366923267 0.710795482039095 2300 0.412484778896464 2 2 0 -6.98101413671413 LTS-011 chr14 81611953 83157152 1545200 * c(GTF2A1, SEL1L, SNORA79, TSHR, STON2) 0.279458412134494 7 0.0571043322516318 1.0379974999144 528 0.52696007500096 5 4 1 -7.06766504070611 LTS-011 chr14 83157153 83157717 565 * character(0) NA 0 NA 0.428 1 NA NA NA NA NA LTS-011 chr14 83157718 89221019 6063302 * c(LINC00911, PTPN21, EML5, FLRT2, GALC, LOC283585, LINC01146, KCNK10, SPATA7, ZC3H14, GPR65) 0.305014607104279 38 0.0670357540319673 0.70726720666081 1287 0.334943618464444 1 1 0 -7.48315392898332 LTS-011 chr14 89221020 89258731 37712 * EML5 NA 0 NA 1.731 1 NA NA NA NA NA LTS-011 chr14 89258732 93429060 4170329 * c(SNORA11B, FBLN5, FOXN3, CHGA, TTC8, TC2N, SLC24A4, TTC7B, EML5, FOXN3-AS2, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, TDP1, LGMN, KCNK13, PSMC1, CATSPERB, RIN3, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.273912834200235 65 0.0943677034876788 0.824997950317253 3473 0.363789313258184 2 2 0 -6.79028437088185 LTS-011 chr14 93429061 93707733 278673 * c(TMEM251, ITPK1-AS1, ITPK1, UBR7, BTBD7, MOAP1, GON7) 0 1 NA 0.865012315524186 327 0.362972190495309 2 2 0 -5.76922135541515 LTS-011 chr14 93707734 94642531 934798 * c(IFI27L1, PRIMA1, LINC00521, FAM181A-AS1, COX8C, IFI27, ASB2, BTBD7, DDX24, UNC79, PPP4R4, OTUB2, IFI27L2, FAM181A) 0.210745021374582 17 0.143666689413583 0.792894308315598 1080 0.379900901017304 2 2 0 -6.77071159842758 LTS-011 chr14 94642532 94674775 32244 * PPP4R4 NA 0 NA 0.363 1 NA NA NA NA NA LTS-011 chr14 94674776 95236251 561476 * c(SERPINA3, GSC, SERPINA12, SERPINA11, SERPINA9, SERPINA13P, SERPINA5, SERPINA10, SERPINA1, SERPINA4, PPP4R4, SERPINA6) 0.219339246180883 25 0.118032241358029 0.646800913324506 738 0.394707508532066 2 2 0 -6.87405608305327 LTS-011 chr14 95236252 95934260 698009 * c(MIR3173, GSC, SYNE3, DICER1, DICER1-AS1, LINC00341, CLMN) 0.259022724180608 7 0.0253827838167076 0.853181888156368 576 0.316671140276371 2 2 0 -6.90518167614213 LTS-011 chr14 95934261 95942044 7784 * SYNE3 NA 0 NA 1.462 1 NA NA NA NA NA LTS-011 chr14 95942045 96009872 67828 * c(SYNE3, SNHG10, GLRX5) 0.280816468235536 2 0.0205060966544098 1.44660640364864 58 0.408869267293896 5 4 1 -6.74162309990095 LTS-011 chr14 96009873 100995540 4985668 * c(LOC100129345, TUNAR, MIR5698, CYP46A1, PAPOLA, AK7, SLC25A29, DEGS2, EML1, TCL6, C14orf177, SLC25A47, CCDC85C, LINC01550, MIR345, GLRX5, EVL, GSKIP, ATG2B, C14orf132, BDKRB1, BDKRB2, BCL11B, VRK1, WARS, YY1, WDR25, TCL1A, SETD3, HHIPL1, CCNK, TCL1B) 0.244753211326388 69 0.089948047902098 0.783802454192278 3133 0.366205745514552 2 2 0 -6.76345387726521 LTS-011 chr14 100995541 102198832 1203292 * c(MIR300, MIR541, MIR665, MIR543, MIR889, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MEG9, MIR2392, LINC00239, DIO3, LINC00523, RTL1, MIR127, MIR134, MIR136, MIR154, MIR299, MIR323A, MIR337, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, MEG3, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MIR487A, NA NA NA NA NA NA NA NA NA LTS-011 MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, MIR656, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-011 SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, MEG8, WDR25, DLK1) 0.202102230415454 14 0.158695454417407 0.574047754420748 775 0.352682452481084 1 1 0 -7.09715194224682 LTS-011 NA NA NA NA LTS-011 chr14 102198833 102228222 29390 * c(LINC00239, PPP2R5C) NA 0 NA 2.382 1 NA NA NA NA NA LTS-011 chr14 102228223 102446924 218702 * c(DYNC1H1, PPP2R5C) 0.193309603662611 6 0.13667869865735 1.01430389178097 273 0.473573297147289 3 3 0 -6.73329422759223 LTS-011 chr14 102446925 102449351 2427 * DYNC1H1 NA 0 NA 0.718 1 NA NA NA NA NA LTS-011 chr14 102449352 103466057 1016706 * c(MIR4309, ANKRD9, DYNC1H1, RCOR1, HSP90AA1, CINP, ZNF839, MOK, TRAF3, AMN, WDR20, CDC42BPB, TECPR2) 0.220492241601688 14 0.108656733405186 0.775550808933677 1795 0.341799841905466 2 2 0 -6.77676087884528 LTS-011 chr14 103466058 103470151 4094 * CDC42BPB NA 0 NA 1.003 1 NA NA NA NA NA LTS-011 chr14 103470152 104040990 570839 * c(LINC00605, CKB, TRMT61A, EIF5, KLC1, MARK3, SNORA28, TNFAIP2, APOPT1, EXOC3L4, BAG5, CDC42BPB) 0.258234421238602 20 0.0528118806410272 1.00124788658907 797 0.483136723559775 2 2 0 -6.82976068204129 LTS-011 chr14 104040991 104638991 598001 * c(MIR203B, TDRD9, LINC00637, PPP1R13B, KIF26A, ASPG, KLC1, MIR203A, RD3L, XRCC3, ZFYVE21, APOPT1, C14orf2) 0.202812948076432 16 0.0989584929823274 0.752066224015761 840 0.378937197798177 2 2 0 -6.85857948355426 LTS-011 chr14 104638992 105071651 432660 * c(KIF26A, TMEM179, C14orf180) 0.213878037725396 11 0.091269730121019 0.495341251903629 290 0.291928086514434 2 2 0 -7.47347361273923 LTS-011 chr14 105071652 105071654 3 * character(0) NA 0 NA 0.701 1 NA NA NA NA NA LTS-011 chr14 105071655 105936492 864838 * c(ZBTB42, MIR4710, SIVA1, AHNAK2, C14orf79, PLD4, ADSSL1, LINC00638, AKT1, PACS2, NUDT14, CEP170B, BRF1, GPR132, JAG2, CDCA4, INF2, TEX22, BTBD6, MTA1) 0.210834740496688 52 0.0850698940743907 0.761317695596374 2257 0.380811942817486 2 2 0 -6.84734217143347 LTS-011 chr14 105936493 105936640 148 * MTA1 NA 0 NA 1.996 1 NA NA NA NA NA LTS-011 chr14 105936641 105965829 29189 * c(CRIP1, CRIP2, C14orf80, MTA1) 0.16010878414261 5 0.134986295600702 1.15099690846637 175 0.623292097983656 4 4 0 -6.73351107658399 LTS-011 chr14 105965830 105965864 35 * character(0) 0.273 1 NA 0.625 1 NA NA NA NA NA LTS-011 chr14 105965865 107178965 1213101 * c(ELK2AP, LINC00226, LINC00221, TMEM121, ADAM6, FAM30A) 0.252682503692839 39 0.111791563081694 0.576929493047452 734 0.451663662490255 1 1 0 -6.99178619439668 LTS-011 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.625428727508737 53 0.143098751007522 1 NA NA -5.76746879012089 LTS-011 chr15 20169987 20170011 25 * character(0) 0.361 1 NA 1.659 1 NA NA NA NA NA LTS-011 chr15 20170012 22690558 2520547 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.344847431964562 27 0.109568943028366 0.537039412188261 307 0.659577991818487 1 1 0 -6.80021240788569 LTS-011 chr15 22690559 22833360 142802 * c(GOLGA8DP, GOLGA6L1) NA 0 NA 1.084 1 NA NA NA NA NA LTS-011 chr15 22833361 23888993 1055633 * c(HERC2P7, MIR4508, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, MAGEL2, GOLGA8S, MKRN3, NIPA2) 0.393908238794469 15 0.0619145340272341 0.951321864995799 769 0.726003564433122 3 2 1 -6.76550424773157 LTS-011 chr15 23888994 25523619 1634626 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-011 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, PWRN1, PWRN2, PWAR5, SNURF) 0.284119015923801 10 0.151354660758542 0.644071680608062 640 0.344610375746273 1 1 0 -6.81010088703035 LTS-011 NA NA NA NA LTS-011 chr15 25523620 25582414 58795 * UBE3A NA 0 NA 1.027 1 NA NA NA NA NA LTS-011 chr15 25582415 26147768 565354 * c(LOC100128714, MIR4715, ATP10A, UBE3A) 0.386259963969319 10 0.147271631121996 1.11455452232394 329 0.48758584682223 3 2 1 -6.74484614231924 LTS-011 chr15 26147769 26260479 112711 * LOC100128714 NA 0 NA 0.65 1 NA NA NA NA NA LTS-011 chr15 26260480 27216508 956029 * c(LOC100128714, GABRA5, GABRB3, GABRG3, LINC00929) 0.383345223054761 9 0.142083113391814 0.670993919431458 265 0.301095209360855 1 1 0 -6.8929837520818 LTS-011 chr15 27216509 27516826 300318 * GABRG3 0 1 NA 0.825275441515133 21 0.662208645727455 2 2 0 -5.76449735636689 LTS-011 chr15 27516827 28090272 573446 * c(GABRG3, OCA2) 0.197354876360906 4 0.200044994938639 0.712433807519317 120 0.563657764073201 2 2 0 -6.78670706752909 LTS-011 chr15 28090273 28096523 6251 * OCA2 NA 0 NA 0.935 1 NA NA NA NA NA LTS-011 chr15 28096524 29444082 1347559 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, OCA2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.236552036671635 10 0.176856376129835 0.922745826253452 766 0.54344207489485 2 2 0 -6.7779020090855 LTS-011 chr15 29444083 29544656 100574 * FAM189A1 0.412 1 NA 0.561099047917037 11 0.258736932037156 1 1 0 -5.76973303163355 LTS-011 chr15 29544657 30337572 792916 * c(FAM189A1, NSMCE3, TJP1) 0.39942124181811 2 0.0827314933988261 1.04391913354932 349 0.600559033719624 3 2 1 -6.76373600345642 LTS-011 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.484 1 NA NA NA NA NA LTS-011 chr15 30491510 31042739 551230 * c(LOC100288637, DKFZP434L187, CHRFAM7A, ARHGAP11B) NA 0 NA 0.497690950342251 128 0.344321093605908 1 NA NA -5.87055255114035 LTS-011 chr15 31042740 31942063 899324 * c(LOC100288637, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10) 0.335202453553052 18 0.160870142084786 1.03874283906044 691 0.494733204127667 3 2 1 -6.78165501194706 LTS-011 chr15 31942064 31947326 5263 * OTUD7A NA 0 NA 0.628 1 NA NA NA NA NA LTS-011 chr15 31947327 32620485 673159 * c(CHRNA7, OTUD7A) 0.365 1 NA 0.520791730884632 134 0.308608702073352 1 1 0 -5.86010967964079 LTS-011 chr15 32620486 32907752 287267 * c(WHAMMP1, LOC100996255, GOLGA8O, ARHGAP11A) NA 0 NA 1.531 1 NA NA NA NA NA LTS-011 chr15 32907753 34357285 1449533 * c(TMCO5B, CHRM5, GREM1, FMN1, AVEN, RYR3, SCG5, ARHGAP11A) 0.38911277805568 58 0.121491178581324 0.837661825483765 1478 0.414564554834073 2 1 1 -6.74453958373358 LTS-011 chr15 34357286 34376264 18979 * c(CHRM5, EMC7) NA 0 NA 1.368 1 NA NA NA NA NA LTS-011 chr15 34376265 34671629 295365 * c(PGBD4, GOLGA8A, LPCAT4, NUTM1, EMC4, NOP10, EMC7, KATNBL1, SLC12A6) 0 1 NA 1.03062692460441 575 0.509671757028124 3 3 0 -5.7644735235703 LTS-011 chr15 34671630 35085558 413929 * c(MIR1233-2, GOLGA8A, GOLGA8B, GJD2, ACTC1) 0.076129406047167 2 0.353553390593274 0.5817009399853 223 0.322034871480529 1 1 0 -7.02354182447245 LTS-011 chr15 35085559 35085696 138 * ACTC1 NA 0 NA 0.791 1 NA NA NA NA NA LTS-011 chr15 35085697 40329289 5243593 * c(MIR3942, DPH6-AS1, MIR4510, RASGRP1, GPR176, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, FSIP1, FAM98B, C15orf53, C15orf54, MEIS2, EIF2AK4, ZNF770, SRP14, ACTC1, THBS1, ANP32AP1, C15orf41, DPH6, AQR) 0.443495224774492 38 0.0850871196080014 0.838854774279959 2175 0.38394825390192 2 1 1 -6.89041660703966 LTS-011 chr15 40329290 40329394 105 * SRP14 NA 0 NA 2.415 1 NA NA NA NA NA LTS-011 chr15 40329395 40699931 370537 * c(SRP14-AS1, ANKRD63, IVD, C15orf52, PLCB2, PAK6, C15orf56, PHGR1, SRP14, BUB1B, DISP2, KNSTRN, BMF) 0.341426971446916 29 0.0795152648231865 1.21988333940143 1040 0.488477521369757 4 3 1 -6.74899127459881 LTS-011 chr15 40699932 40700121 190 * IVD NA 0 NA 0.496 1 NA NA NA NA NA LTS-011 chr15 40700122 40911274 211153 * c(CHST14, BAHD1, RPUSD2, MRPL42P5, IVD, KNL1, C15orf57) 0.412317082517827 9 0.15647443880711 0.781569418592593 454 0.308872408033761 2 1 1 -6.73756851666909 LTS-011 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.403 1 NA NA NA NA NA LTS-011 chr15 40912850 40915386 2537 * KNL1 NA 0 NA 0.350209612265048 52 0.0666364797795152 0 NA NA -5.77013058874631 LTS-011 chr15 40915387 41023603 108217 * c(RAD51-AS1, KNL1, RAD51) NA 0 NA 0.62200062502421 210 0.233034139183645 1 NA NA -5.76522853914305 LTS-011 chr15 41023604 41364156 340553 * c(RHOV, GCHFR, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, VPS18, RAD51, C15orf62, SPINT1, CHAC1, ZFYVE19) 0.375178607339539 6 0.183228181966276 0.903429725227037 920 0.365405493536531 3 2 1 -6.75632995292204 LTS-011 chr15 41364157 41518848 154692 * c(EXD1, INO80) NA 0 NA 0.530418353468991 131 0.242715172500262 1 NA NA -5.79219670080885 LTS-011 chr15 41518849 41522648 3800 * EXD1 NA 0 NA 0.785 1 NA NA NA NA NA LTS-011 chr15 41522649 43813290 2290642 * c(JMJD7, PLA2G4B, MIR4310, CHP1, OIP5, TGM7, PLA2G4E, ZSCAN29, TTBK2, CDAN1, ADAL, EXD1, UBR1, EPB42, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, TUBGCP4, PLA2G4D, EHD4, ITPKA, LTK, MAP1A, NDUFAF1, NUSAP1, SPTBN5, HAUS2, STARD9, ZNF106, MIR626, MIR627, TP53BP1, OIP5-AS1, TYRO3, TMEM62, CAPN3, JMJD7-PLA2G4B, SNAP23, TGM5, LCMT2) 0.404724628859261 85 0.140249824118485 0.789114547459887 5341 0.351697568193551 2 1 1 -6.7433423092307 LTS-011 chr15 43813291 43852785 39495 * c(MAP1A, PPIP5K1) 0.413 1 NA 0.573324898618428 272 0.171194811667564 1 1 0 -5.7668838532634 LTS-011 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.055 1 NA NA NA NA NA LTS-011 chr15 43873177 43927626 54450 * c(CKMT1B, CATSPER2, STRC, PPIP5K1) 0.307 1 NA 0.220469699593574 192 0.162405896702044 0 0 0 -6.1698783261884 LTS-011 chr15 43927627 43927905 279 * CATSPER2 NA 0 NA 0.498 1 NA NA NA NA NA LTS-011 chr15 43927906 44029073 101168 * c(CATSPER2, CATSPER2P1, CKMT1A) NA 0 NA 0.358113566602986 223 0.260304152731106 0 NA NA -5.77463905492916 LTS-011 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 0.591 1 NA NA NA NA NA LTS-011 chr15 44029088 45029051 999964 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.156503605158649 3 0.244219163867212 0.855740936958275 1400 0.382271615973439 2 2 0 -6.82247498467216 LTS-011 chr15 45029052 45047053 18002 * TRIM69 NA 0 NA 0.451 1 NA NA NA NA NA LTS-011 chr15 45047054 45407977 360924 * c(TRIM69, TERB2, DUOXA2, DUOX2, SORD) 0.318889672856871 12 0.12627972197395 0.60291211152066 480 0.296911744922276 1 1 0 -6.73521359805388 LTS-011 chr15 45407978 51634255 6226278 * c(MIR147B, GABPB1-AS1, DCAF13P3, NDUFAF4P1, MIR4716, MIR4713, MIR4712, SLC27A2, NA, CYP19A1, DUT, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, HDC, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, DUOXA2, MYEF2, DUOX1, TRPM7, FLJ10038, DTWD1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, ATP8B4, SEMA6D, C15orf48, SPPL2A, SHF, DUOXA1, USP8, SLC28A2, COPS2, SECISBP2L) 0.392920091562897 70 0.148988442866084 0.771047099840824 4833 0.390692031068185 2 1 1 -6.80442063366563 LTS-011 chr15 51634256 51766637 132382 * c(DMXL2, GLDN) 0 1 NA 0.746701273965085 209 0.337655214312322 2 2 0 -5.76949660027337 LTS-011 chr15 51766638 52684198 917561 * c(LOC100129973, BCL2L10, MIR1266, GNB5, LEO1, DMXL2, LYSMD2, SCG3, TMOD3, TMOD2, MYO5A, MYO5C, MAPK6) 0.265790354889692 16 0.218821693013589 0.802758543944203 1448 0.409936107453256 2 2 0 -6.73868128869875 LTS-011 chr15 52684199 53042979 358781 * c(ARPP19, MYO5A, FAM214A) NA 0 NA 0.867918386738983 198 0.392575169787588 2 NA NA -5.77029675237695 LTS-011 chr15 53042980 53073084 30105 * ONECUT1 0.449 1 NA 0.481070164847448 43 0.122517641733716 0 0 0 -5.80673745752665 LTS-011 chr15 53073085 56721424 3648340 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, WDR72, PYGO1, PRTG, ONECUT1, TEX9, UNC13C, NEDD4, RSL24D1, MNS1, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.422568147334693 33 0.0922364899362371 0.672225887089317 1930 0.30692169664782 2 1 1 -7.50523288938812 LTS-011 chr15 56721425 56723590 2166 * c(TEX9, MNS1) NA 0 NA 1.722 1 NA NA NA NA NA LTS-011 chr15 56723591 58006752 1283162 * c(MYZAP, GCOM1, LOC145783, LINC00926, TEX9, ZNF280D, MNS1, TCF12, POLR2M, CGNL1) 0.375621437654478 6 0.182698294098951 0.911278870524936 767 0.396049248998221 3 2 1 -6.79602507062012 LTS-011 chr15 58006753 58571385 564633 * c(GCOM1, AQP9, POLR2M, ALDH1A2) 0.383083224471592 4 0.0696293759845656 0.606529724929245 293 0.237375495982318 1 1 0 -7.10641213715375 LTS-011 chr15 58571386 58571401 16 * ALDH1A2 0.361 1 NA 1.263 1 NA NA NA NA NA LTS-011 chr15 58571402 63901433 5330032 * c(USP3-AS1, MIR2116, ADAM10, LACTB, C2CD4A, FAM81A, MGC15885, FOXB1, FBXL22, GTF2A2, ANXA2, C2CD4B, LIPC, MIR190A, MYO1E, RPS27L, RAB8B, FAM63B, RNF111, VPS13C, RORA, BNIP2, HSP90AB4P, TPM1, CA12, ICE2, SLTM, APH1B, TLN2, ALDH1A2, HERC1, CCNB2, GCNT3, LDHAL6B, USP3) 0.40229625371194 36 0.147019877718778 0.86240079043755 3965 0.394095870780532 2 1 1 -6.80285302292557 LTS-011 chr15 63901434 63904437 3004 * HERC1 NA 0 NA 0.531 1 NA NA NA NA NA LTS-011 chr15 63904438 68114456 4210019 * c(MIR1272, MIR4311, IQCH-AS1, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, DIS3L, MTFMT, SLC51B, C15orf61, LCTL, ZNF609, DAPK2, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, SKOR1, SMAD3, SMAD6, OAZ2, RASL12, SPG21, HACD3, CSNK1G1, PPIB, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SNX1, SCARNA14, AAGAB, SNX22, PIF1, PLEKHO2, VWA9, FAM96A, MEGF11, CILP, RAB11A, NA NA NA NA NA NA NA NA NA LTS-011 HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101) 0.417420494783371 96 0.115712681074304 0.793738530405883 5144 0.654832338326922 2 1 1 -6.7466875223198 LTS-011 NA NA NA NA LTS-011 chr15 68114457 68116059 1603 * SKOR1 NA 0 NA 0.578 1 NA NA NA NA NA LTS-011 chr15 68116060 68120362 4303 * SKOR1 0.454194320200531 2 0.0254558441227157 0.471133273737334 70 0.162169387200321 0 0 0 -8.53363477431393 LTS-011 chr15 68120363 68657157 536795 * c(FEM1B, ITGA11, SKOR1, CLN6, PIAS1, CALML4) 0.427013363422428 9 0.0397523584206019 0.980214134280947 600 0.401069899746255 2 1 1 -7.02438913892697 LTS-011 chr15 68657158 68661469 4312 * ITGA11 NA 0 NA 0.341 1 NA NA NA NA NA LTS-011 chr15 68661470 69696061 1034592 * c(MIR548H4, MIR4312, CORO2B, ITGA11, SPESP1, GLCE, EWSAT1, PAQR5, NOX5, ANP32A-IT1, ANP32A) 0.353427233231707 8 0.210929913884751 0.738471850736941 630 0.524024290300452 2 1 1 -6.7861457286975 LTS-011 chr15 69696062 73428367 3732306 * c(NR2E3, ADPGK-AS1, SENP8, HIGD2B, DRAIC, CT62, GRAMD2, ARIH1, HEXA, TMEM202, LINC00593, MYO9A, NEO1, PKM, LRRC49, PAQR5, UACA, LARP6, GOLGA6B, THAP10, PARP6, BBS4, CELF6, RPLP1, MIR629, MIR630, TLE3, THSD4, HEXA-AS1, ADPGK, KIF23) 0.416463286974062 19 0.146364221653097 0.882255878851149 2585 0.396043372401945 2 1 1 -6.83159142279966 LTS-011 chr15 73428368 73468686 40319 * NEO1 NA 0 NA 0.368 1 NA NA NA NA NA LTS-011 chr15 73468687 74240320 771634 * c(HCN4, LOXL1-AS1, TBC1D21, NPTN, REC114, C15orf59, LOXL1, NEO1, CD276) 0.389350215094617 13 0.135941493825799 0.745818097356454 684 0.38052674189155 2 1 1 -6.76243489116174 LTS-011 chr15 74240321 74241755 1435 * LOXL1 NA 0 NA 1.483 1 NA NA NA NA NA LTS-011 chr15 74241756 74324977 83222 * c(LOXL1, PML, STOML1) 0.422716370985578 4 0.0698689248998914 1.34411668163975 128 0.515546234857351 4 2 2 -6.78509063936359 LTS-011 chr15 74324978 78839035 4514058 * c(DNM1P35, MIR4313, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, ARID3B, CLK3, TMEM266, HYKK, CRABP1, CSK, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, ODF3L1, SCAMP5, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, LOC283731, IDH3A, GOLGA6A, IREB2, ISLR, MAN2C1, MPI, UBL7-AS1, SCAPER, PML, RPP25, COMMD4, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, ISLR2, PTPN9, CPLX3, RCN2, PPCDC, NA NA NA NA NA NA NA NA NA LTS-011 STRA6, LOC645752, SH2D7, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, LINC00597, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A) 0.385630916101384 108 0.162195277567118 0.817773932705867 5465 0.430266358252049 2 1 1 -6.73983417872744 LTS-011 NA NA NA NA LTS-011 chr15 78839036 78841052 2017 * PSMA4 NA 0 NA 0.313 1 NA NA NA NA NA LTS-011 chr15 78841053 79048626 207574 * c(CHRNA3, CHRNA5, CHRNB4, PSMA4, LOC646938) 0.416847896952288 8 0.050389199523027 0.585557722692772 291 0.238990247758191 2 1 1 -7.00890661434065 LTS-011 chr15 79048627 79048732 106 * character(0) NA 0 NA 0.959 1 NA NA NA NA NA LTS-011 chr15 79048733 79502233 453501 * c(MORF4L1, ADAMTS7, CTSH, MIR184, RASGRF1, ANKRD34C-AS1) 0.437694758082992 12 0.0395918571364763 0.916851646671087 481 0.494739646648662 2 1 1 -7.19252959557507 LTS-011 chr15 79502234 79585572 83339 * c(ANKRD34C, ANKRD34C-AS1) NA 0 NA 0.564 1 NA NA NA NA NA LTS-011 chr15 79585573 80137849 552277 * c(ST20-MTHFS, MTHFS, KIAA1024, TMED3, ANKRD34C) 0.345202792172494 4 0.226551502606655 0.615747842628792 267 0.317220233381238 1 1 0 -6.73800852283133 LTS-011 chr15 80137850 80181400 43551 * c(ST20-MTHFS, MTHFS) NA 0 NA 1.082 1 NA NA NA NA NA LTS-011 chr15 80181401 82338419 2157019 * c(ST20-MTHFS, MIR4514, MTHFS, CFAP161, FAH, MESDC2, ST20-AS1, LINC00927, TMC3, IL16, ST20, ZFAND6, CEMIP, ABHD17C, MESDC1, BCL2A1, MIR549A, STARD5, MEX3B, ARNT2) 0.422253540267909 24 0.139312884221614 0.864272948418531 1563 0.393182409695543 2 1 1 -6.77597585453217 LTS-011 chr15 82338420 82383967 45548 * MEX3B NA 0 NA 0.558 1 NA NA NA NA NA LTS-011 chr15 82383968 85164381 2780414 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, HDGFRP3, BTBD1, TM6SF1, ZSCAN2, ADAMTSL3, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, EFL1, AP3B2, FAM103A1, HOMER2) 0.421800010174946 35 0.111834827184686 0.714598760478522 1574 0.335370093786632 2 1 1 -6.9898225294573 LTS-011 chr15 85164382 85164387 6 * c(ZSCAN2, LOC642423) NA 0 NA 0.852 1 NA NA NA NA NA LTS-011 chr15 85164388 86292546 1128159 * c(AKAP13, SEC11A, NMB, PDE8A, SCAND2P, ZSCAN2, ALPK3, LOC642423, WDR73, SLC28A1, ZNF592) 0.436369192349971 57 0.0910273582494553 0.893556440608117 1372 0.416751849217922 2 1 1 -6.84994743867142 LTS-011 chr15 86292547 86807761 515215 * c(MIR1276, AKAP13, AGBL1, KLHL25) 0.445021200267716 5 0.0634255469034363 0.64450833651216 111 0.208271397312677 2 1 1 -7.35586133771602 LTS-011 chr15 86807762 86809627 1866 * AGBL1 0 1 NA 0.580886361649724 15 0.716693146797614 1 1 0 -5.76441401821479 LTS-011 chr15 86809628 89151526 2341899 * c(MIR1179, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, DET1, MRPS11, AGBL1-AS1) 0.17890757010194 7 0.236874389055626 0.704289455831006 696 0.325203352445171 2 2 0 -7.04369366319362 LTS-011 chr15 89151527 89155120 3594 * c(MIR3529, MIR7-2) NA 0 NA 1.257 1 NA NA NA NA NA LTS-011 chr15 89155121 89193497 38377 * c(MIR3529, ISG20, MIR7-2, AEN) 0.429251113635455 2 0.00212132034355964 1.26818434761051 84 0.377538140615021 4 2 2 -17.2365749886601 LTS-011 chr15 89193498 89199652 6155 * ISG20 NA 0 NA 1.05496508135083 31 0.319455056828552 3 NA NA -5.76444948777306 LTS-011 chr15 89199653 89379350 179698 * ACAN NA 0 NA 0.168 1 NA NA NA NA NA LTS-011 chr15 89379351 89394493 15143 * ACAN 0.425 1 NA 0.570800118113544 85 0.184234119110054 1 1 0 -5.76536517111429 LTS-011 chr15 89394494 89414630 20137 * ACAN 0.466665308035207 3 0.00152752523165195 0.587373243992983 94 0.268448198244466 0 0 0 -24.3535867667708 LTS-011 chr15 89414631 93306354 3891724 * c(LINC00930, PRC1-AS1, C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, C15orf32, HAPLN3, MESP2, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, SLCO3A1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, MIR9-3, MAN2A2, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MESP1, UNC45A, WDR93, RLBP1, BLM, CRTC3, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.413441280561382 70 0.132725705258774 0.822620840461868 4463 0.386756690221929 2 1 1 -6.73922294502153 LTS-011 chr15 93306355 93586862 280508 * c(MIR3175, LINC01578, CHD2, RGMA, ASB9P1) 0.450779507916607 7 0.0467144313380576 1.08886613965028 382 0.417011543451938 4 2 2 -7.33104563433016 LTS-011 chr15 93586863 93586913 51 * RGMA NA 0 NA 0.762 1 NA NA NA NA NA LTS-011 chr15 93586914 96874764 3287851 * c(LINC00924, LINC01197, LOC440311, MCTP2, RGMA, NR2F2-AS1, NR2F2) 0.454426974170292 9 0.0396736688497547 0.713875150959444 396 0.351332577694693 2 1 1 -7.8814908825985 LTS-011 chr15 96874765 96874861 97 * NR2F2 NA 0 NA 1.428 1 NA NA NA NA NA LTS-011 chr15 96874862 97326781 451920 * c(MIR1469, SPATA8-AS1, SPATA8, NR2F2) 0 1 NA 1.23012167223292 108 0.773216397492982 4 4 0 -5.76441131174188 LTS-011 chr15 97326782 97326868 87 * SPATA8 NA 0 NA 0.574 1 NA NA NA NA NA LTS-011 chr15 97326869 98421276 1094408 * c(SPATA8, LINC00923) 0.443837615140614 12 0.0305449246887666 0.511651201259906 132 0.200205648377807 0 0 0 -8.54449323608096 LTS-011 chr15 98421277 98421349 73 * character(0) 0.427 1 NA 1.067 1 NA NA NA NA NA LTS-011 chr15 98421350 102226162 3804813 * c(LOC100507472, MIR4714, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3, ARRDC4) 0.436905677351623 76 0.075857792855066 0.874633963560073 2727 0.364651432027925 2 1 1 -6.94428356576413 LTS-011 chr15 102226163 102516492 290330 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) 0.326464862587512 4 0.0709577338984272 0.616750223807378 194 0.35759541876425 1 1 0 -6.73345634967319 LTS-011 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.573 1 NA NA NA NA NA LTS-011 chr16 81704 108585 26882 * c(POLR3K, RHBDF1, SNRNP25) 0.432 1 NA 1.11402145399508 93 0.69155975657527 3 3 0 -5.76466801747328 LTS-011 chr16 108586 684005 575420 * c(LOC100134368, MIR3176, MIR5587, MRPL28, WFIKKN1, PRR35, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, NME4, LUC7L, RAB40C, TMEM8A, RHBDF1, LINC00235, PDIA2, CAPN15, NPRL3, AXIN1, FAM234A, RGS11, PIGQ, RAB11FIP3) 0.358162582718666 45 0.0930049580518277 0.91212456383153 1649 0.423905964722129 3 2 1 -6.79278334134577 LTS-011 chr16 684006 774520 90515 * c(STUB1, WFIKKN1, CCDC78, FBXL16, WDR90, JMJD8, FAM173A, METRN, WDR24, METTL26, MCRIP2, RHOT2, RHBDL1) 0.390211477461931 40 0.0474502708646453 1.06605921243296 840 0.356605833860345 3 2 1 -6.7570361017461 LTS-011 chr16 774521 774692 172 * CCDC78 0.379 1 NA 1.29303224656371 3 0.944967900689401 4 4 0 -5.76441043924787 LTS-011 chr16 774693 857692 83000 * c(MSLN, RPUSD1, CCDC78, PRR25, GNG13, CHTF18, NARFL, MIR662, HAGHL) 0.232044548706731 7 0.163275840221387 1.0430717032358 550 0.45492329083389 2 2 0 -6.75203485221802 LTS-011 chr16 857693 863284 5592 * PRR25 NA 0 NA 0.663 1 NA NA NA NA NA LTS-011 chr16 863285 1036481 173197 * c(SOX8, PRR25, LMF1) 0 2 0 0.754971122979606 186 0.437624022027611 0 0 0 -Inf LTS-011 chr16 1036482 1129872 93391 * c(SSTR5-AS1, SOX8, SSTR5) 0.372 1 NA 0.613136302721189 65 0.589373986661989 1 1 0 -5.76443263628925 LTS-011 chr16 1129873 1323767 193895 * c(TPSD1, TPSG1, C1QTNF8, TPSB2, SSTR5, TPSAB1, CACNA1H) 0.367229733767047 41 0.0918168776663106 0.640653196425514 477 0.337348189204118 1 1 0 -6.85255444856726 LTS-011 chr16 1323768 1326602 2835 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-011 chr16 1326603 1657350 330748 * c(TSR3, CLCN7, C16orf91, PTX4, CCDC154, UNKL, UBE2I, TMEM204, GNPTG, BAIAP3, IFT140, TELO2) 0.374874892182674 39 0.0743678078889141 0.872891403538589 1179 0.436895159622359 3 2 1 -6.76226420978332 LTS-011 chr16 1657351 1962047 304697 * c(MIR3177, NUBP2, EME2, MAPK8IP3, MEIOB, HAGH, IGFALS, NME3, CRAMP1, HS3ST6, LINC00254, MRPS34, FAHD1, HN1L, SPSB3, IFT140) 0.378577375909324 39 0.0662808505308925 1.02236601742644 1036 0.533042370855161 3 2 1 -6.73374459558066 LTS-011 chr16 1962048 2115516 153469 * c(TBL3, NOXO1, RNF151, GFER, SNORA64, NPW, NDUFB10, NTHL1, MSRB1, SNORA10, RPL3L, RPS2, HS3ST6, SNORA78, TSC2, SNHG9, ZNF598, SYNGR3, SLC9A3R2) 0.221150660103006 4 0.194896553757799 1.14225326582922 706 0.490313916126205 3 3 0 -6.74780726361198 LTS-011 chr16 2115517 2222541 107025 * c(MIR1225, MIR3180-5, MIR4516, RAB26, SNORD60, PKD1, TSC2, TRAF7) 0.0721406273368883 5 0.164574603143985 0.942698602000088 377 0.466468932042254 6 6 0 -6.87748829345166 LTS-011 chr16 2222542 2239402 16861 * c(CASKIN1, TRAF7) 0.493 1 NA 0.8501796704152 181 0.354283555058513 2 2 0 -5.76456829695803 LTS-011 chr16 2239403 2650483 411081 * c(MIR940, MIR3178, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, BRICD5, PGP, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CASKIN1, MLST8, ABCA17P, CEMP1, C16orf59, CCNF) 0.393023522627362 11 0.0528639763922466 0.954182096066199 1057 0.429590394622802 3 2 1 -6.77068406804103 LTS-011 chr16 2650484 2650491 8 * PDPK1 NA 0 NA 0.409 1 NA NA NA NA NA LTS-011 chr16 2650492 2732841 82350 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.16549211880716 2 0.260922402257836 0.463402243061498 151 0.520421415162581 2 2 0 -6.84628177410369 LTS-011 chr16 2732842 2747830 14989 * KCTD5 NA 0 NA 0.758 1 NA NA NA NA NA LTS-011 chr16 2747831 3199691 451861 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, ZNF205, ZNF213, THOC6, KREMEN2, ZNF205-AS1, PRSS27, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, IL32) 0.446730647508498 44 0.0498456178984537 0.914984328634652 1425 1.44582891961122 2 1 1 -7.17625259642925 LTS-011 chr16 3199692 3199713 22 * character(0) 0.463 1 NA 0.442 1 NA NA NA NA NA LTS-011 chr16 3199714 3779107 579394 * c(MTRNR2L4, ZNF263, TRAP1, CREBBP, ZNF597, DNASE1, NLRC3, CLUAP1, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, C16orf90, ZNF75A, ZNF174, ZNF200, NAA60, SLX4, TIGD7) 0.358316466900515 24 0.185197818248645 0.726328613348899 1334 0.388993396492687 2 1 1 -6.79603317589376 LTS-011 chr16 3779108 4947740 1168633 * c(LINC01569, CORO7-PAM16, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf71, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, PPL, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3) 0.444181985055312 39 0.0830816956443903 0.880658667576263 2009 0.472898006705163 2 1 1 -6.90114156229177 LTS-011 chr16 4947741 8889572 3941832 * c(NAGPA-AS1, C16orf89, ABAT, EEF2KMT, TMEM186, TMEM114, NAGPA, RBFOX1, PPL, ALG1, METTL22, SEC14L5) 0.380219228667624 12 0.182030196462681 0.705803489987643 748 0.433106107427503 2 1 1 -6.98530055166722 LTS-011 chr16 8889573 9215438 325866 * c(CARHSP1, TMEM186, C16orf72, PMM2, USP7) 0.407011847875543 2 0.0388908729652601 0.964379211465456 461 0.395612941176896 2 1 1 -6.77765193777632 LTS-011 chr16 9761122 10788844 1027723 * c(TEKT5, EMP2, GRIN2A, ATF7IP2) 0.374132905009866 12 0.1784453061101 0.639125378966164 593 0.324256393155705 1 1 0 -6.79228441550076 LTS-011 chr16 10788845 10837615 48771 * character(0) NA 0 NA 2.022 1 NA NA NA NA NA LTS-011 chr16 10837616 12536912 1699297 * c(RMI2, CLEC16A, RSL1D1, DEXI, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, TXNDC11, PRM1, PRM2, PRM3, TNFRSF17, TNP2, TVP23A, SNN, SOCS1, SNX29, LITAF) 0.406786587004512 35 0.139953005317782 0.88971845722494 1388 0.383193270327767 2 1 1 -6.78905659084039 LTS-011 chr16 12536913 13329637 792725 * c(MIR4718, CPPED1, SHISA9, SNX29) 0.429612412597618 7 0.0472642016954139 0.59110855267993 220 0.208905846888638 2 1 1 -7.8707289804588 LTS-011 chr16 14013942 16315578 2301637 * c(MIR365A, NPIPA5, MIR3180-4, NTAN1, FOPNL, ERCC4, PDXDC1, NOMO1, MPV17L, ABCC6, ABCC1, MYH11, PARN, BFAR, RRN3, NDE1, MIR193B, MKL2, MIR484, NPIPA3, ABCC6P2, PLA2G10, C16orf45, NPIPA1, KIAA0430) 0.417996231978978 41 0.0693752697204161 0.838261621803356 1866 0.395450714360095 2 1 1 -6.77141125478401 LTS-011 chr16 16315579 18793336 2477758 * c(MIR3179-2, NOMO2, PKD1P1, ABCC6, NOMO3, XYLT1, ABCC6P1) 0.413386552263209 2 0.0346482322781408 0.579283057489414 235 0.328716440360537 2 1 1 -8.06542646198051 LTS-011 chr16 18793337 18793646 310 * character(0) NA 0 NA 0.77 1 NA NA NA NA NA LTS-011 chr16 18793647 19896627 1102981 * c(COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, RPS15A, CLEC19A, TMC5, TMC7, CCP110) 0.437923876963266 22 0.103627872364224 0.84188057862995 1507 0.421830022637437 2 1 1 -6.80732026717443 LTS-011 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.521 1 NA NA NA NA NA LTS-011 chr16 20015702 20576143 560442 * c(ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, UMOD) 0.424313192667558 22 0.050884471474404 0.495222405869012 518 0.254259927986283 0 0 0 -7.07598437010813 LTS-011 chr16 20576144 20994240 418097 * c(ERI2, ACSM1, DCUN1D3, ACSM2B, DNAH3, THUMPD1, LYRM1, ACSM3, LOC81691) 0.406902277221956 23 0.137862522459203 0.781530874316818 644 0.40928173587072 2 1 1 -6.73606496277466 LTS-011 chr16 20994241 20996404 2164 * DNAH3 NA 0 NA 0.56 1 NA NA NA NA NA LTS-011 chr16 20996405 21272562 276158 * c(CRYM, ANKS4B, DNAH3, TMEM159, ZP2) 0.482316526462807 6 0.0142746862195519 0.564746917063105 458 0.242381518582565 0 0 0 -12.9936684953805 LTS-011 chr16 21272563 21272591 29 * CRYM 0.477 1 NA 1.191 1 NA NA NA NA NA LTS-011 chr16 21272592 27461521 6188930 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, SLC5A11, EARS2, CRYM, VWA3A, OTOA, C16orf82, NSMCE1, GGA2, NPIPB3, PDZD9, TNRC6A, IL21R-AS1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, POLR3E, PRKCB, UBFD1, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, NA NA NA NA NA NA NA NA NA LTS-011 UQCRC2, PALB2, KDM8, DCTN5, COG7, HS3ST4, HS3ST2) 0.413375079816631 94 0.129031680892669 0.740649284995217 4188 0.368239429835511 2 1 1 -6.96830547637714 LTS-011 NA NA NA NA LTS-011 chr16 27461522 27462199 678 * c(IL21R-AS1, IL21R) 0 1 NA 1.04500069875594 11 1.66176840088558 3 3 0 -5.76441021581274 LTS-011 chr16 27462200 28113322 651123 * c(GSG1L, XPO6, KIAA0556, IL21R-AS1, GTF3C1, IL21R) 0.270737148472 6 0.224620272163192 0.755716449369933 488 0.453942855466468 2 2 0 -6.75073771993615 LTS-011 chr16 28113323 28115882 2560 * XPO6 NA 0 NA 0.915 1 NA NA NA NA NA LTS-011 chr16 28115883 28634734 518852 * c(SGF29, CLN3, XPO6, IL27, NUPR1, SBK1, APOBR, SULT1A2, SULT1A1) 0.182063694945872 4 0.229161333271271 0.874447762221281 577 0.492440471475727 3 3 0 -6.76582703917938 LTS-011 chr16 28634735 28634818 84 * SULT1A1 NA 0 NA 0.763 1 NA NA NA NA NA LTS-011 chr16 28634819 28834421 199603 * c(ATXN2L, SULT1A1) 0.465 1 NA 0.400314701231538 39 0.691133793398838 0 0 0 -5.76441510666721 LTS-011 chr16 28834422 28834457 36 * ATXN2L NA 0 NA 2.284 1 NA NA NA NA NA LTS-011 chr16 28834458 29367230 532773 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.361314770991997 9 0.202709014216054 0.786986625418474 856 0.379835693845397 2 1 1 -6.75992499798483 LTS-011 chr16 29367231 29624346 257116 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.324691865485801 39 0.378586594739697 0 NA NA -5.80927131517507 LTS-011 chr16 29624347 29624403 57 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 2.15 1 NA NA NA NA NA LTS-011 chr16 29624404 29814231 189828 * c(SLX1B-SULT1A4, QPRT, C16orf54, KIF22, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, ZG16, SPN, SLC7A5P1) 0 2 0 0.77001415890976 280 0.43039205015088 0 0 0 -Inf LTS-011 chr16 29814232 29831579 17348 * c(SLX1B-SULT1A4, PRRT2, KIF22, MAZ, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, PAGR1) 0.456 1 NA 1.2929768841594 181 0.571348607620886 4 4 0 -5.76449451787543 LTS-011 chr16 29831580 29923177 91598 * c(SLX1B-SULT1A4, CDIPT, KCTD13, ASPHD1, SEZ6L2, SMG1P2, CDIPT-AS1, SLX1A, BOLA2, LOC606724, LOC613038, PAGR1, MVP) 0.0774353157327311 5 0.21376809864898 0.775999763859948 345 0.540208697797063 5 5 0 -6.85381458102941 LTS-011 chr16 29923178 29993108 69931 * c(SLX1B-SULT1A4, TMEM219, KCTD13, ASPHD1, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, TAOK2) 0.447 1 NA 0.950091652738525 83 0.295826801728019 3 3 0 -5.76687560687957 LTS-011 chr16 29993109 30206163 213055 * c(SLX1B-SULT1A4, CORO1A, C16orf92, ALDOA, INO80E, SMG1P2, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, TBX6, GDPD3, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2) 0.428283677200835 16 0.0864415023778123 0.823534803774907 749 0.378154386082665 2 1 1 -6.78667555089534 LTS-011 chr16 30206164 30208582 2419 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, LOC613038) NA 0 NA 0.702 1 NA NA NA NA NA LTS-011 chr16 30208583 30354548 145966 * c(SLX1B-SULT1A4, SMG1P2, SULT1A4, SLX1A, SMG1P5, LOC613037, LOC613038) NA 0 NA 0.328514077754437 39 0.352639247101753 0 NA NA -5.79058823742646 LTS-011 chr16 30354549 30362127 7579 * CD2BP2 NA 0 NA 0.823 1 NA NA NA NA NA LTS-011 chr16 30362128 30485393 123266 * c(CD2BP2, SEPT1, ZNF48, SEPHS2, TBC1D10B, MYLPF, ITGAL, ZNF771, DCTPP1) 0.444484418713941 5 0.0365718470958195 1.05739619541634 433 0.368938696799899 4 2 2 -7.45137456274093 LTS-011 chr16 30485394 30485411 18 * ITGAL NA 0 NA 0.703 1 NA NA NA NA NA LTS-011 chr16 30485412 30532937 47526 * c(MIR4518, ITGAL) 0.15042842176155 2 0.287792459942925 0.5840217935485 147 0.365102433533828 3 3 0 -6.81402703649182 LTS-011 chr16 30532938 30582945 50008 * c(ZNF688, ITGAL, ZNF747, ZNF768, ZNF764) 0.472666969501189 7 0.0246431676999065 1.14869414602336 199 0.448216442741881 4 2 2 -9.63257841200195 LTS-011 chr16 30582946 30675709 92764 * c(ZNF689, ZNF785, ZNF688, FBRS, PRR14) NA 0 NA 1.01431595891591 283 0.409610169142396 3 NA NA -5.76442335762227 LTS-011 chr16 30675710 30676031 322 * FBRS NA 0 NA 0.767 1 NA NA NA NA NA LTS-011 chr16 30676032 30678308 2277 * FBRS 0 1 NA 0.883324414102421 35 0.392929253580499 2 2 0 -5.76447040035696 LTS-011 chr16 30678309 30905313 227005 * c(MIR762, MIR4519, TMEM265, SRCAP, ZNF629, PHKG2, FBRS, SNORA30, LOC730183, CCDC189, BCL7C, RNF40) 0.442 1 NA 0.83111222553318 762 0.356610618091591 2 2 0 -5.76491057969734 LTS-011 chr16 30905314 30905543 230 * BCL7C NA 0 NA 1.117 1 NA NA NA NA NA LTS-011 chr16 30905544 30961170 55627 * c(CTF1, FBXL19-AS1, FBXL19, ORAI3) NA 0 NA 1.24198951998733 157 0.442967860270617 4 NA NA -5.76443151851895 LTS-011 chr16 30961171 30964511 3341 * ORAI3 NA 0 NA 0.756 1 NA NA NA NA NA LTS-011 chr16 30964512 31105572 141061 * c(STX1B, PRSS53, STX4, VKORC1, ZNF668, HSD3B7, ORAI3, ZNF646, SETD1A) 0.480140444849053 2 0.00777817459305199 0.773377467619838 715 0.322273004109077 2 1 1 -15.8689862055595 LTS-011 chr16 31105573 31105671 99 * c(PRSS53, VKORC1) NA 0 NA 0.936 1 NA NA NA NA NA LTS-011 chr16 31105672 31226216 120545 * c(PYCARD-AS1, BCKDK, PRSS36, FUS, PYCARD, PRSS53, TRIM72, PRSS8, VKORC1, KAT8) 0.492 1 NA 1.02242195566856 394 0.352206723470997 3 3 0 -5.76441171485735 LTS-011 chr16 31226217 31227986 1770 * c(PYDC1, TRIM72) NA 0 NA 0.445 1 NA NA NA NA NA LTS-011 chr16 31227987 31383974 155988 * c(PYDC1, ITGAM, ITGAX, TRIM72) 0 5 0 0.665269451672896 263 0.681835844679476 0 0 0 -Inf LTS-011 chr16 31383975 31384554 580 * ITGAX 0.448 1 NA 0.838813701234253 3 0.0916569691840178 2 2 0 -5.76444946711135 LTS-011 chr16 31384555 33816335 2431781 * c(CLUHP3, ZNF267, ZNF720, COX6A2, ZNF843, ITGAD, ITGAX, SLC6A10P, LOC390705, YBX3P1, NA, AHSP, C16orf58, SLC5A2, TGFB1I1, TP53TG3D, ARMC5) 0.365106803696026 25 0.112466987748998 0.715984118424813 1056 0.401671748375487 2 1 1 -6.94162985045822 LTS-011 chr16 33816336 33961104 144769 * LINC00273 NA 0 NA 2.12 1 NA NA NA NA NA LTS-011 chr16 33961105 33962376 1272 * LINC00273 0.333065604342637 64 0.0843050709630172 1.42320398448321 88 0.650760578647019 7 5 2 -6.73446192449514 LTS-011 chr16 33962377 33962387 11 * LINC00273 NA 0 NA 0.847 1 NA NA NA NA NA LTS-011 chr16 33962388 34257013 294626 * LINC00273 0.367934417762412 2 0.0374766594028871 0.760503621956759 35 0.290367414311795 3 2 1 -6.97991042644107 LTS-011 chr16 34257014 34682380 425367 * c(LINC01566, UBE2MP1) NA 0 NA 0.733198484083959 111 0.283111515811227 2 NA NA -5.79847838911317 LTS-011 chr16 46508169 46508314 146 * ANKRD26P1 0.423 1 NA 0.466296902467763 3 0.210675896422285 0 0 0 -5.76445846526283 LTS-011 chr16 46508315 48387813 1879499 * c(MIR548AE2, DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, MYLK3, ABCC12) 0.156585242143782 13 0.199951853179068 0.588885159287444 1613 0.341491185872353 1 1 0 -7.14516598987572 LTS-011 chr16 48387814 53399875 5012062 * c(LINC00919, LOC100507577, MIR548AE2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, CNEP1R1, TOX3, BRD7, C16orf97, HEATR3, SALL1, NOD2, PAPD5, CASC16, SIAH1, CHD9, NKD1, CBLN1, N4BP1) 0.290346207194325 25 0.165014161008482 0.984503645219273 1866 0.479009399233361 3 2 1 -6.9254172116547 LTS-011 chr16 53399876 53403373 3498 * LOC643802 NA 0 NA 0.51 1 NA NA NA NA NA LTS-011 chr16 53403374 54154114 750741 * c(RPGRIP1L, RBL2, LOC643802, AKTIP, FTO) 0.178698044756073 9 0.181542694702927 0.575406992680339 607 0.331904673956234 1 1 0 -7.11692869091435 LTS-011 chr16 54154115 54155409 1295 * character(0) 0.37 1 NA 0.461027235766056 29 0.0932612861142539 0 0 0 -5.76630344665576 LTS-011 chr16 54155410 55739287 1583878 * c(IRX5, MMP2, LPCAT2, CRNDE, SLC6A2, IRX6, IRX3, CAPNS2) 0.34481839762426 20 0.066011880908308 0.624462877168235 658 0.34626216281997 1 1 0 -6.7865525979269 LTS-011 chr16 55739288 55989972 250685 * c(CES1, CES5A, CES1P2, CES1P1, SLC6A2) 0.445188425720743 8 0.0543769909323525 0.438900411112667 161 0.179182003701015 0 0 0 -7.12310532418881 LTS-011 chr16 55989973 56225286 235314 * c(GNAO1, LOC283856) NA 0 NA 0.669 1 NA NA NA NA NA LTS-011 chr16 56225287 57273272 1047986 * c(MIR3935, CETP, NUDT21, CPNE2, DKFZP434H168, AMFR, GNAO1, MT1DP, MIR138-2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, OGFOD1, BBS2, MT1IP, SLC12A3, FAM192A, NLRC5, MT4, RSPRY1, NUP93, HERPUD1) 0.3637076801223 23 0.0563542928631943 0.649902856820088 1651 0.313724816603979 1 1 0 -7.01626389914014 LTS-011 chr16 57273273 57708479 435207 * c(ADGRG5, ADGRG3, ARL2BP, PLLP, POLR2C, DOK4, COQ9, CIAPIN1, CCL17, CCL22, CX3CL1, ADGRG1, CCDC102A) 0.267033453197471 20 0.0663296988336931 0.825948132812246 827 0.333006983077474 2 2 0 -6.79543515820391 LTS-011 chr16 57708480 58312608 604129 * c(KATNB1, CNGB1, CSNK2A2, ADGRG3, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MMP15, ZNF319, USB1, DRC7) 0.327006847284519 27 0.0618548756447351 0.640115593095417 1025 0.283871182947482 1 1 0 -6.74660054712832 LTS-011 chr16 58312609 58327840 15232 * c(PRSS54, CCDC113) 0.339938420227687 3 0.0747685317050786 0.398978236545515 106 0.327891964983603 1 1 0 -6.76743907399556 LTS-011 chr16 58327841 58426203 98363 * PRSS54 NA 0 NA 0.752 1 NA NA NA NA NA LTS-011 chr16 58426204 58633421 207218 * c(CNOT1, GINS3, NDRG4, SNORA46, SNORA50A, SETD6) 0.311097550261907 10 0.0816929209499412 0.675360711629625 541 0.247010705785207 1 1 0 -6.77789280485936 LTS-011 chr16 58633422 58699023 65602 * CNOT1 NA 0 NA 0.382 1 NA NA NA NA NA LTS-011 chr16 58699024 64294839 5595816 * c(CDH8, GOT2, SLC38A7, APOOP5) 0.244123937673705 5 0.158070553867569 0.474122804589519 315 0.235461600783084 0 0 0 -8.70923732941296 LTS-011 chr16 64294840 66887581 2592742 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, TERB1, LINC00922, CKLF, TK2, CA7, NAE1) 0.296634865905626 19 0.189986072127246 1.00612025238346 1047 0.488438758775117 3 2 1 -6.85005633041568 LTS-011 chr16 66887582 67006838 119257 * c(CDH16, CES3, FAM96B, PDP2, RRAD, CA7, CES2) 0.39 1 NA 0.98912227363792 399 0.318658484185983 3 3 0 -5.76510771476143 LTS-011 chr16 67006839 70154614 3147776 * c(CDH3, MIR1538, MIR1972-1, NUTF2, CTCF, NFAT5, WWP2, NRN1L, ZFP90, CARMIL2, KCTD19, TMED6, CTRL, NQO1, AGRP, E2F4, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, NIP7, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, NA NA NA NA NA NA NA NA NA LTS-011 THAP11, RANBP10, PDF, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.400017703748081 81 0.0941732265823906 1.02941531868319 5972 1.01394360240425 3 2 1 -6.75788241414684 LTS-011 NA NA NA NA LTS-011 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.053 1 NA NA NA NA NA LTS-011 chr16 70161183 70182398 21216 * c(CLEC18C, PDPR) 0.304 1 NA 0.538799834014301 97 0.340036422270895 1 1 0 -5.7659279192877 LTS-011 chr16 70182399 70843812 661414 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, PDPR, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.217899591406893 9 0.202204104805021 1.04688145034454 1263 0.544039420752175 3 3 0 -6.74088498419648 LTS-011 chr16 70843813 72130175 1286363 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, HYDIN, TXNL4B, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, MARVELD3, DHX38, IST1) 0.396549966562218 120 0.116240800666099 0.882486429579794 2086 0.489219231728374 2 1 1 -6.75591941937487 LTS-011 chr16 72130176 72130203 28 * DHX38 0.383 1 NA 1.149 1 NA NA NA NA NA LTS-011 chr16 72130204 74367444 2237241 * c(LINC01568, HCCAT5, LOC283922, ZFHX3, PSMD7, PMFBP1, DHX38) 0.330966851581967 23 0.125210005409094 1.16593226906296 836 0.49409409419143 4 3 1 -6.74809110041222 LTS-011 chr16 74367445 74367458 14 * LOC283922 NA 0 NA 0.454 1 NA NA NA NA NA LTS-011 chr16 74367459 74387789 20331 * LOC283922 NA 0 NA 0.563512096764085 86 0.270129888451365 1 NA NA -5.7652907926718 LTS-011 chr16 74387790 74394504 6715 * LOC283922 NA 0 NA 1.094 1 NA NA NA NA NA LTS-011 chr16 74394505 81187685 6793181 * c(SYCE1L, MIR4719, CLEC3A, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GCSH, GLG1, LOC283922, NUDT7, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, TERF2IP, RFWD3, CENPN, CMC2, VAT1L, FA2H, TMEM231, WDR59, DYNLRB2, ZNRF1, CNTNAP4, BCAR1) 0.387496434586102 90 0.111261189592836 1.0026095707412 2799 0.501348274303068 3 2 1 -6.74036582788589 LTS-011 chr16 81187686 81190598 2913 * PKD1L2 0.303 1 NA 0.988381738723747 15 1.16326083960236 3 3 0 -5.76441147459011 LTS-011 chr16 81190599 81412820 222222 * c(PKD1L2, BCO1, GAN) 0.35503353171042 23 0.0594550682308911 1.00539533935267 351 0.50459049402315 3 2 1 -6.8443039651954 LTS-011 chr16 81412821 81925180 512360 * c(LOC100129617, MIR4720, PLCG2, CMIP, GAN) 0.335211042822582 8 0.0509171245400658 1.50856041931307 225 0.539031285792849 7 5 2 -6.78538250743387 LTS-011 chr16 81925181 81927301 2121 * PLCG2 NA 0 NA 1.02 1 NA NA NA NA NA LTS-011 chr16 81927302 83828665 1901364 * c(MIR3182, CDH13, MPHOSPH6, HSD17B2, PLCG2, SDR42E1) 0.361648119245857 8 0.0533472452093693 0.97888032768599 418 0.408692845828598 3 2 1 -6.82182705240919 LTS-011 chr16 83828666 84156940 328275 * c(CDH13, SLC38A8, MLYCD, OSGIN1, HSBP1, NECAB2, HSDL1, MBTPS1) 0.306120087516212 13 0.105056334094301 1.39150806384508 449 0.598358080466399 5 4 1 -6.76181416401306 LTS-011 chr16 84156941 88124816 3967876 * c(MIR1910, C16orf95, MIR5093, EMC8, DNAAF1, COX4I1, FLJ30679, LOC146513, ADAD2, LINC00311, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, FAM92B, IRF8, LOC400548, FENDRR, C16orf74, GINS2, KLHDC4, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, MTHFSD, LINC00917, CA5A, KLHL36, FBXO31, SLC7A5, MAP1LC3B, HSDL1, CRISPLD2, TAF1C, USP10, KCNG4, KIAA0513, ATP2C2) 0.316383259747229 103 0.100860875657214 1.16323872237102 2809 0.85888103853496 4 3 1 -6.75111502785971 LTS-011 chr16 88124817 88134263 9447 * character(0) NA 0 NA 0.608 1 NA NA NA NA NA LTS-011 chr16 88134264 88505649 371386 * ZNF469 0.355422833063389 5 0.0388612917953071 0.756100462384405 262 0.253866552873427 1 1 0 -7.21513293956667 LTS-011 chr16 88505650 88505654 5 * ZNF469 NA 0 NA 1.262 1 NA NA NA NA NA LTS-011 chr16 88505655 90109711 1604057 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR4722, MIR5189, CDH15, TUBB3, RNF166, SPATA2L, SPATA33, ZC3H18, SLC22A31, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, TCF25, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MC1R, MVD, CHMP1A, TRAPPC2L, DEF8, SNORD68, RPL13, SPG7, GAS8-AS1, DBNDD1, CDT1, SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, NA NA NA NA NA NA NA NA NA LTS-011 PIEZO1) 0.322652283632718 140 0.106722044870092 1.24052466806272 3614 0.60306130801911 4 3 1 -6.73507107434982 LTS-011 NA NA NA NA LTS-011 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 1.02752168309351 123 0.38168905763546 3 NA NA -5.76441944017472 LTS-011 chr17 6004 6115 112 * DOC2B 0.184 1 NA 0.870758253049727 3 0.244561512371291 2 2 0 -5.76441531643098 LTS-011 chr17 6116 995088 988973 * c(DBIL5P, MIR3183, LOC100506388, ABR, TIMM22, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, DOC2B, RPH3AL) 0.166042668383037 27 0.0508597871477845 1.33900723660477 852 0.547786589539269 4 4 0 -6.74979287477573 LTS-011 chr17 995089 1003843 8755 * ABR NA 0 NA 0.928 1 NA NA NA NA NA LTS-011 chr17 1003844 1204290 200447 * c(TUSC5, ABR, BHLHA9) 0.101872587531665 4 0.0632580693139882 0.854028580124637 124 0.460699478091259 6 6 0 -7.0269127859163 LTS-011 chr17 1204291 2323072 1118782 * c(PITPNA-AS1, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, SMG6, LOC284009, HIC1, MIR132, MIR212, MIR22, MNT, MYO1C, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, SNORD91A, SNORD91B, TLCD2, YWHAE, METTL16, RILP, MIR22HG, SCARF1, SGSM2) 0.177908907014541 49 0.0460864132146688 1.36817512343937 2231 0.889023023980974 4 4 0 -6.80435977283014 LTS-011 chr17 2323073 2937789 614717 * c(MIR1253, RAP1GAP2, CLUH, PAFAH1B1, METTL16) 0.212100715301061 14 0.0751543832299974 0.846318021844813 367 0.369968414242101 3 3 0 -6.85343270458786 LTS-011 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.058 1 NA NA NA NA NA LTS-011 chr17 2965957 3379677 413721 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.232816639376441 12 0.0881252552113218 0.479687557109844 308 0.333562289291819 2 2 0 -7.31092721553835 LTS-011 chr17 3379678 3384912 5235 * c(ASPA, SPATA22) NA 0 NA 0.94 1 NA NA NA NA NA LTS-011 chr17 3384913 3990881 605969 * c(P2RX5-TAX1BP3, CTNS, TRPV3, ZZEF1, SHPK, TAX1BP3, ITGAE, ASPA, ATP2A3, P2RX1, P2RX5, NCBP3, TRPV1, EMC6, GSG2, CAMKK1, SPATA22) 0.231992500767534 45 0.0855705332554155 0.820098998768745 1554 0.355950881804464 2 2 0 -6.74842136236071 LTS-011 chr17 3990882 3992028 1147 * ZZEF1 NA 0 NA 1.513 1 NA NA NA NA NA LTS-011 chr17 3992029 4910842 918814 * c(C17orf107, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, GGT6, SPNS2, SPNS3, ENO3, CAMTA2, ZZEF1, ALOX15, RNF167, PELP1, GP1BA, VMO1, SMTNL2, GLTPD2, INCA1, MED11, ARRB2, MINK1, ANKFY1, PFN1, PLD2, PSMB6, CXCL16, UBE2G1, SLC25A11, ZMYND15, TM4SF5, SPAG7) 0.185256351564652 32 0.0840149516263278 1.05507214073183 2147 0.459570960514937 3 3 0 -6.74577073674546 LTS-011 chr17 4910843 4916865 6023 * KIF1C NA 0 NA 0.435 1 NA NA NA NA NA LTS-011 chr17 4916866 5138157 221292 * c(LOC100130950, KIF1C, ZFP3, SCIMP, SLC52A1, ZNF232, ZNF594, USP6) 0.12091493883773 5 0.117369928005431 0.702138408377221 475 0.335100998454199 3 3 0 -7.13046796071048 LTS-011 chr17 5138158 6588145 1449988 * c(LOC100130950, MIR4520-1, MIR4520-2, ALOX15P1, NLRP1, WSCD1, AIPL1, SLC13A5, LOC339166, NUP88, MED31, DERL2, FAM64A, DHX33, C1QBP, LOC728392, MIS12, PITPNM3, RPAIN, TXNDC17, RABEP1, KIAA0753) 0.173705693009418 23 0.104465834950651 1.09474280716131 1252 0.579317948906517 3 3 0 -6.77302546039002 LTS-011 chr17 6588146 6888695 300550 * c(ALOX12-AS1, FBXO39, ALOX12P2, SLC13A5, XAF1, TEKT1) 0.0722897667205761 2 0.123036579926459 0.769706837793709 271 0.432769181101167 4 4 0 -7.24634495664652 LTS-011 chr17 6888696 6888811 116 * ALOX12-AS1 NA 0 NA 1.364 1 NA NA NA NA NA LTS-011 chr17 6888812 6940257 51446 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, SLC16A13, ALOX12, BCL6B, MIR497) 0.214 1 NA 1.33815801980385 262 0.594318694469857 5 5 0 -5.76484136106558 LTS-011 chr17 6940258 6941425 1168 * SLC16A13 NA 0 NA 0.894 1 NA NA NA NA NA LTS-011 chr17 6941426 7107098 165673 * c(CLEC10A, SLC16A11, DLG4, SLC16A13, ASGR1, ASGR2) 0.205935778382993 8 0.0823449842344476 0.976091524533131 309 0.496529720684356 3 3 0 -6.74247237074497 LTS-011 chr17 7107099 7107324 226 * DLG4 NA 0 NA 2.311 1 NA NA NA NA NA LTS-011 chr17 7107325 7219602 112278 * c(GABARAP, CLDN7, DLG4, DVL2, EIF5A, CTDNEP1, ELP5, GPS2, ACADVL, MIR324, YBX2, SLC2A4, PHF23, NEURL4) 0.198276286364825 4 0.0528236058342606 1.39773526657243 679 0.513936076436132 3 3 0 -6.7591895192398 LTS-011 chr17 7219603 7220556 954 * c(GPS2, NEURL4) NA 0 NA 0.934 1 NA NA NA NA NA LTS-011 chr17 7220557 7580759 360203 * c(TMEM256-PLSCR3, SENP3-EIF4A1, SAT2, CHRNB1, KCTD11, C17orf74, FGF11, TMEM256, SENP3, SNORA67, TMEM102, GPS2, TMEM95, SPEM1, TNFSF12-TNFSF13, ATP1B2, POLR2A, PLSCR3, NLGN2, ZBTB4, SLC35G6, SHBG, SNORA48, SNORD10, SOX15, TP53, NEURL4, TNK1, TNFSF13, TNFSF12, FXR2, MPDU1, CD68, ACAP1) 0.207699172724606 32 0.0643204866275124 1.11579909726383 1826 0.459440926489911 3 3 0 -6.76075487715108 LTS-011 chr17 7580760 7589596 8837 * c(WRAP53, TP53) NA 0 NA 4.209 1 NA NA NA NA NA LTS-011 chr17 7589597 7591812 2216 * c(WRAP53, TP53) NA 0 NA 2.0606179729604 46 0.574580075187029 8 NA NA -5.76441014247633 LTS-011 chr17 7591813 7724710 132898 * c(RPL29P2, DNAH2, EFNB3, WRAP53) 0.191958445307432 4 0.035147309048252 0.884090350734833 497 0.352634211846369 3 3 0 -6.75436413864346 LTS-011 chr17 7724711 7726692 1982 * DNAH2 NA 0 NA 1.42 1 NA NA NA NA NA LTS-011 chr17 7726693 7797281 70589 * c(CHD3, CYB5D1, DNAH2, KDM6B, NAA38, TMEM88) 0.223497190014363 3 0.0360555127546399 1.4492916162156 314 0.511245037591343 7 6 1 -6.74667006974845 LTS-011 chr17 7797282 7797433 152 * CHD3 NA 0 NA 1.219 1 NA NA NA NA NA LTS-011 chr17 7797434 8022065 224632 * c(MIR4314, CHD3, CNTROB, ALOX12B, ALOX15B, LOC284023, GUCY2D, TRAPPC1, ALOXE3, SCARNA21, KCNAB3) 0.188672487946438 17 0.07354410441441 1.08604920006547 887 0.499494075762222 3 3 0 -6.7411375956524 LTS-011 chr17 8022066 8022102 37 * ALOXE3 NA 0 NA 1.469 1 NA NA NA NA NA LTS-011 chr17 8022103 8048010 25908 * c(PER1, ALOXE3, HES7) 0.228 1 NA 1.41957513237632 70 0.525546891726825 5 5 0 -5.76441717597726 LTS-011 chr17 8048011 8050737 2727 * PER1 0.276 1 NA 1.34200196803406 29 0.344591673118005 5 5 0 -5.76447267104041 LTS-011 chr17 8050738 8151316 100579 * c(NA, MIR4521, LINC00324, PER1, BORCS6, VAMP2, CTC1, TMEM107, AURKB) 0.25678822317755 14 0.0461949999672911 1.33944184283255 412 0.581259331666084 6 5 1 -6.7614812062982 LTS-011 chr17 8151317 9774210 1622894 * c(LOC100128288, USP43, KRBA2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DHRS7C, ARHGEF15, PIK3R5, RANGRF, SPDYE4, SLC25A35, MYH10, PFAS, RPL26, RNF222, CTC1, NDEL1, GLP2R, NTN1, STX8) 0.334508377842626 28 0.0827792691886526 0.590651749708031 1697 0.270025754028924 1 1 0 -6.74748421028374 LTS-011 chr17 9774211 9783611 9401 * GLP2R NA 0 NA 0.711 1 NA NA NA NA NA LTS-011 chr17 9783612 10532025 748414 * c(MYH1, MYH2, MYH3, MYH4, MYH8, RCVRN, GAS7, MYH13, GLP2R) 0.286145837020062 43 0.0972437029478628 0.696689184642616 1188 0.333247869410304 1 1 0 -6.91187004031229 LTS-011 chr17 10532026 10532946 921 * MYH3 NA 0 NA 1.15 1 NA NA NA NA NA LTS-011 chr17 10532947 10728972 196026 * c(LINC00675, MAGOH2P, TMEM220-AS1, TMEM220, MYH3, ADPRM, SCO1, PIRT) 0.221768452480894 4 0.1619596143076 0.905532050417831 297 0.318395004910377 2 2 0 -6.75936892868939 LTS-011 chr17 10728973 11144974 416002 * c(SHISA6, PIRT) NA 0 NA 0.252 1 NA NA NA NA NA LTS-011 chr17 11144975 12667174 1522200 * c(MIR744, DNAH9, LINC00670, SHISA6, MAP2K4, ZNF18, MYOCD) 0.312548466435327 13 0.160708527369368 0.463029573494544 746 0.261736181269549 0 0 0 -7.20171466070186 LTS-011 chr17 12667175 15406489 2739315 * c(TVP23C-CDRT4, MIR4731, COX10-AS1, COX10, CDRT15, TVP23C, CDRT4, PMP22, ELAC2, TEKT3, MGC12916, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.285318697800283 37 0.0907431778390217 0.647979901717001 1010 0.383150722031304 1 1 0 -6.90352199367963 LTS-011 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.189 1 NA NA NA NA NA LTS-011 chr17 15440243 15532427 92185 * c(TVP23C-CDRT4, TRIM16, TVP23C, CDRT1) 0.244364675893923 7 0.0336494534024806 0.368055668892153 279 0.381797022278294 2 2 0 -6.96342173643503 LTS-011 chr17 15532428 15613303 80876 * c(TRIM16, ZNF286A) 0.328587820008528 5 0.0705903676148524 0.587026549328186 102 0.37824131956471 1 1 0 -6.73394621793686 LTS-011 chr17 15613304 15619200 5897 * ZNF286A NA 0 NA 0.436 1 NA NA NA NA NA LTS-011 chr17 15619201 15690304 71104 * c(TBC1D26, MEIS3P1, ZNF286A, CDRT15P2) 0.284084064679026 8 0.0846141452206933 0.356641229962613 198 0.193076359088592 1 1 0 -7.18490084659538 LTS-011 chr17 15690305 16454915 764611 * c(MIR1288, LRRC75A-AS1, ZSWIM7, ADORA2B, CENPV, SNORD49A, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF287, SNORD49B, SNORD65, UBB, PIGL, NCOR1) 0.336364985400984 19 0.0495908994669538 0.704056170473235 765 0.25941713546489 1 1 0 -6.90690157103317 LTS-011 chr17 16454916 17713984 1259069 * c(FAM106CP, PEMT, RAI1, SMCR5, NA, USP32P1, FLCN, PLD6, MPRIP, TNFRSF13B, KRT16P2, RASD1, MED9, NT5M, ZNF287, ZNF624, COPS3, CCDC144A) 0.311912450203317 24 0.103389854224299 0.578158361773041 1225 0.34406602005981 1 1 0 -6.75881112319357 LTS-011 chr17 17713985 17714085 101 * RAI1 NA 0 NA 0.989 1 NA NA NA NA NA LTS-011 chr17 17714086 17875841 161756 * c(RAI1, TOM1L2, SREBF1, MIR33B) NA 0 NA 0.921064247283766 279 0.423786144437521 3 NA NA -5.77011041013235 LTS-011 chr17 17875842 17880847 5006 * DRC3 NA 0 NA 0.487 1 NA NA NA NA NA LTS-011 chr17 17880848 18315249 434402 * c(MIEF2, SMCR8, DRG2, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A, GID4, DRC3, ATPAF2) 0.304860623313585 40 0.110755853002715 0.614591547590815 1506 0.297173897271629 1 1 0 -6.75623340500723 LTS-011 chr17 18315250 18710079 394830 * c(FBXW10, TRIM16L, USP32P2, FOXO3B, TBC1D28, CCDC144B, KRT17P5, TVP23B, LGALS9C, KRT16P1, ZNF286B, FAM106A) 0.366828572800258 21 0.115075461783831 0.359537485526075 579 0.303363220836652 0 0 0 -6.81770656048594 LTS-011 chr17 18710080 18769081 59002 * PRPSAP2 NA 0 NA 0.513 1 NA NA NA NA NA LTS-011 chr17 18769082 19186567 417486 * c(EPN2-IT1, GRAP, SLC5A10, EPN2, GRAPL, PRPSAP2, FAM83G) 0.331733624207774 14 0.0741359013443006 0.523914092128215 374 0.213526452255835 1 1 0 -6.85016475093426 LTS-011 chr17 19186568 19315015 128448 * c(MIR1180, EPN2-AS1, EPN2, B9D1, MFAP4, MAPK7, RNF112) 0.120374335092553 2 0.124450793488832 1.26497567593739 311 0.59049108346836 6 6 0 -6.74821187001575 LTS-011 chr17 19315016 19315769 754 * RNF112 NA 0 NA 0.777 1 NA NA NA NA NA LTS-011 chr17 19315770 20224816 909047 * c(AKAP10, SLC47A2, ALDH3A1, ALDH3A2, CCDC144CP, SLC47A1, SNORA59A, RNF112, SPECC1, ULK2) 0.220170710724501 13 0.122641179765848 0.808974828242303 1038 0.443827265362488 2 2 0 -6.75885027637709 LTS-011 chr17 20224817 20254177 29361 * CCDC144CP NA 0 NA 0.56 1 NA NA NA NA NA LTS-011 chr17 20254178 20799510 545333 * c(LOC100287072, CDRT15L2, LGALS9B, CCDC144NL, CCDC144CP, KRT16P3) 0.297875149712596 3 0.0405257120027932 0.499036218922344 210 0.278034243904915 1 1 0 -7.17186421380503 LTS-011 chr17 20799511 20902884 103374 * character(0) NA 0 NA 1.165 1 NA NA NA NA NA LTS-011 chr17 20902885 21320410 417526 * c(USP22, NATD1, DHRS7B, KCNJ12, MAP2K3, TMEM11) 0.314149266403574 63 0.0655705824290278 1.05022778780986 463 0.612627289319237 4 3 1 -6.77776830636261 LTS-011 chr17 21320411 22066835 746425 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.278363266801624 13 0.128653181171866 0.717879540397669 211 0.511645903202643 2 2 0 -6.79817505632629 LTS-011 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.832 1 NA NA NA NA NA LTS-011 chr17 25620838 26114836 493999 * c(MIR4522, WSB1, LGALS9, TBC1D3P5, NOS2, KSR1) 0 1 NA 0.813405696536349 482 0.374152574582933 2 2 0 -5.76441014899262 LTS-011 chr17 26114837 27038891 924055 * c(SPAG5-AS1, MIR4723, SPAG5, SLC46A1, SGK494, TMEM199, PROCA1, LYRM9, ALDOC, SARM1, PPY2P, PYY2, POLDIP2, TMEM97, KRT18P55, NOS2, NLK, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, FOXN1, IFT20, SLC13A2, UNC119, PIGS, KIAA0100) 0.163271920349859 20 0.136284715519425 0.879054754665876 1834 0.455672422539529 3 3 0 -6.82658056259848 LTS-011 chr17 27038892 27041307 2416 * RAB34 NA 0 NA 1.813 1 NA NA NA NA NA LTS-011 chr17 27041308 27055928 14621 * c(NARR, TLCD1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, NEK8, RPL23A, RAB34) NA 0 NA 1.32351735514431 171 0.483780614506344 4 NA NA -5.7646197787961 LTS-011 chr17 27055929 27061044 5116 * NEK8 NA 0 NA 0.658 1 NA NA NA NA NA LTS-011 chr17 27061045 27494082 433038 * c(MIR451B, MIR4732, SEZ6, DHRS13, FLOT2, ERAL1, NEK8, MYO18A, MIR144, PIPOX, FAM222B, MIR451A, PHF12, TIAF1, TRAF4) 0.246083429329154 13 0.0931508288909816 0.919978772503972 1028 0.426348766404468 2 2 0 -6.75466244966952 LTS-011 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.38 1 NA NA NA NA NA LTS-011 chr17 27528620 27530406 1787 * character(0) NA 0 NA 0.335970356058106 46 0.123227577062897 0 NA NA -5.76646752135406 LTS-011 chr17 27530407 27530413 7 * character(0) 0.309 1 NA 1.078 1 NA NA NA NA NA LTS-011 chr17 27530414 27956273 425860 * c(MIR4523, ABHD15, ANKRD13B, CRYBA1, GIT1, NUFIP2, TAOK1, CORO6, SSH2, TP53I13) 0.292238570901039 8 0.121688052588811 0.905670512298415 643 0.46807113590937 2 2 0 -6.83324839240793 LTS-011 chr17 27956274 27956279 6 * SSH2 NA 0 NA 0.527 1 NA NA NA NA NA LTS-011 chr17 27956280 29635078 1678799 * c(MIR3184, MIR4733, CPD, LRRC37BP1, EVI2B, TBC1D29, EFCAB5, TMIGD1, SUZ12P1, NF1, MIR423, OMG, DPRXP4, CRLF3, ADAP2, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, SSH2, GOSR1) 0.142070172569765 21 0.147204926806783 0.758980683331002 1731 0.40139717624731 2 2 0 -7.04594039080501 LTS-011 chr17 29635079 29643387 8309 * c(EVI2B, NF1) NA 0 NA 1.655 1 NA NA NA NA NA LTS-011 chr17 29643388 29645728 2341 * c(EVI2A, NF1) NA 0 NA 1.68931498202462 56 0.752168729343754 6 NA NA -5.76441205713282 LTS-011 chr17 29645729 31268640 1622912 * c(MIR365B, MIR4724, MIR4725, LRRC37B, RHBDL3, EVI2A, SUZ12, TMEM98, MIR193A, MYO1D, NF1, ARGFXP2, RHOT1, COPRS, UTP6, PSMD11, C17orf75, SH3GL1P1, MIR632, ZNF207, RAB11FIP4, CDK5R1) 0.217890924010333 26 0.0939139049260627 0.826432435582308 1745 0.382203726973744 2 2 0 -6.78661310071004 LTS-011 chr17 31268641 31318847 50207 * TMEM98 NA 0 NA 0.517 1 NA NA NA NA NA LTS-011 chr17 31318848 33269635 1950788 * c(AA06, CCT6B, TMEM132E, SPACA3, ASIC2, C17orf102, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13) 0.224834282747136 17 0.103633900313158 0.646346366804012 532 0.435176786640491 2 2 0 -7.06693907233075 LTS-011 chr17 33269636 33269724 89 * CCT6B NA 0 NA 0.992 1 NA NA NA NA NA LTS-011 chr17 33269725 33329822 60098 * c(CCT6B, LIG3, ZNF830) NA 0 NA 1.09062766701855 163 0.334556721919881 3 NA NA -5.76582270867721 LTS-011 chr17 33329823 33329990 168 * LIG3 NA 0 NA 0.632 1 NA NA NA NA NA LTS-011 chr17 33329991 34539376 1209386 * c(SLFN12L, RAD51L3-RFFL, RFFL, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, CCL4L1, LIG3, TBC1D3B, CCL3L3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL3L1, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, SLFN11, RASL10B) 0.235679371904631 30 0.109109462067429 0.737270697574223 2003 0.40487236071185 2 2 0 -6.78039366978371 LTS-011 chr17 34539377 34539390 14 * c(CCL4L1, CCL3L3, CCL3L1) NA 0 NA 0.86 1 NA NA NA NA NA LTS-011 chr17 34539391 34842514 303124 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA, TBC1D3H, ZNHIT3) NA 0 NA 0.361202065386921 40 0.373073976990747 0 NA NA -5.7770256842979 LTS-011 chr17 34842515 36214905 1372391 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.216191358144473 12 0.100142133838345 0.817119036468919 1563 0.394948248417677 2 2 0 -6.78454151608869 LTS-011 chr17 36214906 36233738 18833 * YWHAEP7 NA 0 NA 0.403 1 NA NA NA NA NA LTS-011 chr17 36233739 36421902 188164 * c(YWHAEP7, LOC440434) NA 0 NA 0.314141069452347 83 0.130552835677057 0 NA NA -6.11781578410014 LTS-011 chr17 36421903 36453020 31118 * MRPL45 NA 0 NA 1.076 1 NA NA NA NA NA LTS-011 chr17 36453021 38154084 1701064 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, STARD3, ZPBP2, ERBB2, IKZF3, CISD3, GSDMA, GRB7, SOCS7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, GPR179, NEUROD2, FBXO47, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, FBXL20, TCAP, PGAP3, RPL23, ORMDL3) 0.230756319784556 56 0.0841487377500998 0.858926403553426 3507 0.460117456193652 2 2 0 -6.76601404011847 LTS-011 chr17 38154085 38171668 17584 * c(CSF3, PSMD3) 0.474 1 NA 1.0535626287492 9 0.441960531168917 3 3 0 -5.76446423556481 LTS-011 chr17 38171669 38802072 630404 * c(SNORD124, CCR7, GJD3, CSF3, WIPF2, CASC3, MSL1, IGFBP4, RAPGEFL1, RARA, SMARCE1, THRA, TOP2A, TNS4, NR1D1, MED24, CDC6) 0.272201881617779 19 0.0905368006983997 0.942696815313959 1616 0.388898790179502 2 2 0 -6.838275562272 LTS-011 chr17 38802073 38810904 8832 * SMARCE1 NA 0 NA 0.396 1 NA NA NA NA NA LTS-011 chr17 38810905 39346769 535865 * c(KRTAP4-9, KRTAP4-7, KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.301374796595827 70 0.0808149689924492 0.600569097562856 1217 0.293452740786796 1 1 0 -6.79032088970695 LTS-011 chr17 39346770 39346843 74 * KRTAP9-1 NA 0 NA 0.32 1 NA NA NA NA NA LTS-011 chr17 39346844 39431928 85085 * c(KRTAP9-6, KRTAP9-1, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.320750198637007 9 0.0358333333333333 0.392460319159939 70 0.403875886476302 1 1 0 -6.80638508273069 LTS-011 chr17 39431929 39432216 288 * KRTAP9-7 NA 0 NA 1.087 1 NA NA NA NA NA LTS-011 chr17 39432217 39637388 205172 * c(KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP29-1, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, KRTAP17-1, KRT38, KRT37) 0.279667622922256 17 0.0472774196817541 0.662610572497438 448 0.280597741823278 2 2 0 -7.09396112549157 LTS-011 chr17 39637389 39642368 4980 * KRT35 NA 0 NA 1.243 1 NA NA NA NA NA LTS-011 chr17 39642369 39848936 206568 * c(EIF1, LINC00974, KRT42P, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT36) 0.237361028521023 6 0.0600222181085193 0.944720774000978 461 0.350258249088324 2 2 0 -6.76695603894946 LTS-011 chr17 39848937 39871633 22697 * c(GAST, JUP) NA 0 NA 0.659 1 NA NA NA NA NA LTS-011 chr17 39871634 40025404 153771 * c(P3H4, NT5C3B, GAST, KLHL10, JUP, ACLY, KLHL11, FKBP10, HAP1) 0.167552729014441 8 0.109043159869318 0.7322314143804 581 0.34006186852657 3 3 0 -6.86050096401243 LTS-011 chr17 40025405 40025702 298 * ACLY NA 0 NA 2.215 1 NA NA NA NA NA LTS-011 chr17 40025703 40841031 815329 * c(MIR5010, CNP, FAM134C, ZNF385C, KCNH4, KAT2A, TUBG2, CCR10, PTRF, NKIRAS2, PSMC3IP, HCRT, HSD17B1, NAGLU, ACLY, ATP6V0A1, RAB5C, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, GHDC, CNTNAP1, HSPB9) 0.23359884126553 33 0.0929953872267574 0.961194617325713 2005 0.433148941375374 2 2 0 -6.8149265653102 LTS-011 chr17 40841032 42255725 1414694 * c(LINC00910, HDAC5, RAMP2-AS1, MIR2117, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, TMEM106A, LSM12, CNTD1, CD300LG, RUNDC1, NAGS, DHX8, DUSP3, ETV4, EZH1, FAM215A, G6PC, C17orf105, COA3, AOC2, ASB16-AS1, IFI35, ARL4D, LINC00671, NBR1, MEOX1, MPP2, MPP3, SOST, PPY, PYY, RPL27, WNK4, BRCA1, C17orf53, AARSD1, RND2, VPS25, TMEM101, CNTNAP1, AOC3, BECN1, AOC4P, G6PC3, ASB16) 0.259508171444599 45 0.107230625619303 0.820467267631503 2565 0.379131582908627 2 2 0 -6.74351670058497 LTS-011 chr17 42255726 42295874 40149 * c(ASB16-AS1, ATXN7L3, UBTF, TMUB2, ASB16) 0.229 1 NA 1.08929429627661 248 0.385108931160869 3 3 0 -5.76509633760424 LTS-011 chr17 42295875 42325757 29883 * UBTF NA 0 NA 0.844 1 NA NA NA NA NA LTS-011 chr17 42325758 43131567 805810 * c(GJC1, C1QL1, RUNDC3A, CCDC43, KIF18B, GPATCH8, FZD2, GFAP, FAM171A2, MEIOC, GRN, ITGA2B, CCDC103, ADAM11, SLC25A39, HIGD1B, SLC4A1, DCAKD, DBF4B, EFTUD2) 0.236449601916669 37 0.0892091378182206 0.768844077505343 1583 0.404831980107452 2 2 0 -6.7486963266655 LTS-011 chr17 43131568 43138603 7036 * DCAKD NA 0 NA 1.44 1 NA NA NA NA NA LTS-011 chr17 43138604 43528038 389435 * c(MAP3K14-AS1, HEXIM1, PLCD3, SPATA32, HEXIM2, NMT1, FMNL1, ACBD4, MAP3K14) 0.245048640995141 17 0.0575019181265746 0.997950868569965 712 0.814732704953707 2 2 0 -6.74778370402165 LTS-011 chr17 43528039 43528051 13 * character(0) NA 0 NA 0.595 1 NA NA NA NA NA LTS-011 chr17 43528052 44105183 577132 * character(0) 0.283541781255915 57 0.0736203726775609 0.632903157389086 477 0.314272407486721 1 1 0 -6.93642727832161 LTS-011 chr17 44105184 44248814 143631 * character(0) 0.262866220658191 8 0.064309380564358 0.867185060227189 96 0.292494934541534 2 2 0 -6.77997372113835 LTS-011 chr17 44248815 44248837 23 * character(0) 0.47 1 NA 0.587 1 NA NA NA NA NA LTS-011 chr17 44248838 44364336 115499 * character(0) 0.350913691151706 16 0.121941789391496 1.03329111662801 77 0.61082360051827 4 3 1 -6.75884616256588 LTS-011 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.008 1 NA NA NA NA NA LTS-011 chr17 44408492 44782233 373742 * character(0) NA 0 NA 0.461501046501752 43 0.374415578562983 0 NA NA -5.79863289704613 LTS-011 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.317 1 NA NA NA NA NA LTS-011 chr17 44788332 45249372 461041 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.38076411195734 20 0.100185827340997 0.767498699189148 368 0.341758259109288 2 1 1 -6.76872535701668 LTS-011 chr17 45249373 45266610 17238 * CDC27 0.148 1 NA 1.32365194702908 20 0.49512289542996 4 4 0 -5.76464675176461 LTS-011 chr17 45266611 46620095 1353485 * c(MIR1203, CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, HOXB1, HOXB2, ITGB3, KPNB1, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.249115228936189 11 0.103804886905456 0.85973678143948 1522 0.385172981574542 2 2 0 -6.75050772102545 LTS-011 chr17 46620096 46620106 11 * HOXB2 NA 0 NA 3.414 1 NA NA NA NA NA LTS-011 chr17 46620107 46799264 179158 * c(HOXB-AS1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB-AS3, MIR10A, MIR196A1, PRAC1) 0.274147633488432 11 0.0971268149473573 1.29574112726331 542 0.685598080228397 5 4 1 -6.7407180320633 LTS-011 chr17 46799265 46799615 351 * PRAC1 NA 0 NA 0.405 1 NA NA NA NA NA LTS-011 chr17 46799616 46942472 142857 * c(MIR3185, CALCOCO2, HOXB13, TTLL6, PRAC2, PRAC1) 0.3248162053961 2 0.126572113832392 0.670768511569416 299 0.26394547832511 1 1 0 -6.74580899202583 LTS-011 chr17 46942473 49371472 2429000 * c(TOB1, SLC35B1, CALCOCO2, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GIP, GNGT2, LOC284080, ITGA3, HILS1, TOB1-AS1, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, UBE2Z, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, NA NA NA NA NA NA NA NA NA LTS-011 PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.222806636822402 63 0.0914250971402097 0.872560649859276 4652 0.394290557684195 2 2 0 -6.81613717688464 LTS-011 NA NA NA NA LTS-011 chr17 49371473 54969627 5598155 * c(TOM1L1, MIR3614, C17orf112, COX11, ANKFN1, MMD, MTVR2, STXBP4, HLF, C17orf67, UTP18, TMEM100, CA10, PCTP, TRIM25, KIF2B, DGKE, NOG) 0.186809532699073 4 0.183202074224065 0.740708532820303 821 0.439820234403391 2 2 0 -6.94245485637486 LTS-011 chr17 54969628 54972724 3097 * TRIM25 NA 0 NA 0.919 1 NA NA NA NA NA LTS-011 chr17 54972725 56164588 1191864 * c(MSI2, DYNLL2, RNF126P1, CUEDC1, MRPS23, SCPEP1, SRSF1, TRIM25, VEZF1, COIL, AKAP1) 0.208542602288601 5 0.108068034126656 1.00758816635714 534 0.470031471614732 3 3 0 -6.74158199279338 LTS-011 chr17 56164589 56166456 1868 * DYNLL2 NA 0 NA 0.511 1 NA NA NA NA NA LTS-011 chr17 56166457 60215616 4049160 * c(TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, APPBP2, CLTC, HSF5, OR4D2, C17orf64, DYNLL2, PPM1E, OR4D1, C17orf47, GDPD1, NACA2, SKA2, YPEL2, C17orf82, LPO, MIR142, MIR21, MIR301A, MPO, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, BCAS3, RNF43, MKS1, SMG8, MSX2P1, PRR11, TEX14, INTS2, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, SUPT4H1, TBX2, CA4, MIR454, DHX40, VMP1, EPX, BRIP1, NA NA NA NA NA NA NA NA NA LTS-011 USP32, PPM1D, MTMR4, TSPOAP1, TBX4, MED13) 0.248367604279301 47 0.103068086851797 0.7901759356615 3669 0.368441740126506 2 2 0 -6.74835623304752 LTS-011 NA NA NA NA LTS-011 chr17 60215617 60215934 318 * character(0) NA 0 NA 0.285 1 NA NA NA NA NA LTS-011 chr17 60215935 60530718 314784 * c(EFCAB3, METTL2A, TBC1D3P2) 0.132961033220842 4 0.19026012894631 0.566019266703593 225 0.492402972595246 2 2 0 -7.03704329854773 LTS-011 chr17 60530719 60558420 27702 * TLK2 NA 0 NA 1.251 1 NA NA NA NA NA LTS-011 chr17 60558421 61684896 1126476 * c(DCAF7, TLK2, CYB561, MARCH10, ACE, TANC2, TACO1, KCNH6, MRC2) 0.228610227127018 10 0.0403276855549909 0.803834515461627 845 0.354530780304384 2 2 0 -6.83874980933172 LTS-011 chr17 61684897 61685144 248 * TACO1 NA 0 NA 1.139 1 NA NA NA NA NA LTS-011 chr17 61685145 62746093 1060949 * c(MIR3064, MIR5047, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, DDX5, ERN1, GH1, GH2, MILR1, ICAM2, MAP3K3, TACO1, PECAM1, TEX2, CCDC47, PSMC5, SCN4A, SMURF2, SMARCD2, SNORA50C, SNORD104, LOC729683, LIMD2, CEP95, STRADA, PRR29, CD79B) 0.220384851281673 27 0.0894432605962957 1.01517936951947 1542 0.45714356395112 3 3 0 -6.77721037270283 LTS-011 chr17 62746094 62750075 3982 * LOC146880 NA 0 NA 0.563 1 NA NA NA NA NA LTS-011 chr17 62750076 71410972 8660897 * c(SNORA38B, LINC00674, LINC00673, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, LOC146880, CEP112, SLC39A11, AMZ2P1, BPTF, ARSG, ABCA6, ABCA5, CDC42EP4, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, LINC00511, PLEKHM1P1, LOC440461, AMZ2, SDK2, FAM20A, C17orf80, WIPI1, PRKAR1A, PRKCA, MAP2K6, PSMD12, CPSF4L, SOX9, SSTR2, MIR634, MIR635, CACNG1, AXIN2, FAM104A, NA NA NA NA NA NA NA NA NA LTS-011 RGS9, SLC16A6, COG1, HELZ) 0.259236641711391 61 0.0691828218673541 0.79452949103164 3841 0.37805891224813 2 2 0 -6.77599659388185 LTS-011 NA NA NA NA LTS-011 chr17 71410973 71411936 964 * SDK2 NA 0 NA 0.62 1 NA NA NA NA NA LTS-011 chr17 71411937 72948014 1536078 * c(CD300LD, MIR3615, CD300C, CD300A, USH1G, CD300LB, KIF19, CD300LF, C17orf77, FDXR, NAT9, LINC00469, FADS6, HID1, GRIN2C, RAB37, CD300E, OTOP3, GPR142, BTBD17, LOC400620, SDK2, TMEM104, GPRC5C, RPL38, DNAI2, MGC16275, OTOP2, SLC9A3R1, TTYH2) 0.211882913140433 26 0.131075040163435 0.711196379146934 1740 0.394292204823861 2 2 0 -6.87744343473988 LTS-011 chr17 72948015 73235643 287629 * c(ATP5H, GGA3, KCTD2, HID1, NT5C, CDR2L, MRPL58, HN1, SUMO2, ARMC7, NUP85, SLC16A5) 0.213748755107955 10 0.0869901654722468 0.945501453899108 541 0.441944721597666 3 3 0 -6.76294148622053 LTS-011 chr17 73235644 73235794 151 * GGA3 NA 0 NA 2.209 1 NA NA NA NA NA LTS-011 chr17 73235795 73402334 166540 * c(LOC100287042, MIR3678, GGA3, GRB2, MRPS7, MIF4GD, SLC25A19) 0.268 1 NA 1.25445229454646 240 0.583103769134449 4 4 0 -5.76454217733977 LTS-011 chr17 73402335 73467952 65618 * TMEM94 NA 0 NA 0.895 1 NA NA NA NA NA LTS-011 chr17 73467953 74236338 768386 * c(SMIM6, RNF157-AS1, MIR4738, CDK3, RNF157, TRIM65, UNC13D, EVPL, FOXJ1, EXOC7, WBP2, GALK1, TSEN54, SAP30BP, H3F3B, ZACN, ITGB4, LLGL2, ACOX1, CASKIN2, SMIM5, MRPL38, SRP68, MYO15B, FBF1, UNK, GALR2, TRIM47, RECQL5, TMEM94) 0.219008778900277 51 0.0904710461754391 0.8407668758387 2703 0.373473739316552 2 2 0 -6.78815880781687 LTS-011 chr17 74236339 74261247 24909 * RNF157 NA 0 NA 2.111 1 NA NA NA NA NA LTS-011 chr17 74261248 74272009 10762 * c(UBALD2, QRICH2) 0.156 1 NA 2.39793013268709 44 0.974580337666729 10 10 0 -5.76441651815912 LTS-011 chr17 74272010 74272749 740 * QRICH2 NA 0 NA 1.245 1 NA NA NA NA NA LTS-011 chr17 74272750 74737201 464452 * c(SNHG16, ST6GALNAC2, CYGB, METTL23, AANAT, JMJD6, MXRA7, ST6GALNAC1, PRPSAP1, UBE2O, SRSF2, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, RHBDF2, QRICH2, SPHK1) 0.212107288641887 19 0.121922561944503 1.12859718588018 1026 0.586494931490545 3 3 0 -6.75158245976759 LTS-011 chr17 74737202 74738080 879 * MFSD11 NA 0 NA 0.781 1 NA NA NA NA NA LTS-011 chr17 74738081 79402630 4664550 * c(LOC100130370, TNRC6C-AS1, C17orf99, LOC100294362, MIR1250, MIR4316, MIR3065, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, BAIAP2, SEPT9, TMC6, C1QTNF1, SLC38A10, CANT1, TBC1D16, AFMID, MGAT5B, TEPSIN, RBFOX3, TMC8, CEP131, GAA, TMEM235, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, BIRC5, ENPP7, AATK-AS1, LGALS3BP, FLJ45079, BAIAP2-AS1, MIR338, NPTX1, CCDC40, CBX8, NA NA NA NA NA NA NA NA NA LTS-011 RPTOR, BAHCC1, USP36, RNF213, TNRC6C, SEC14L1, SGSH, ENGASE, SNHG20, SCARNA16, TIMP2, TK1, MIR657, CARD14, MFSD11, CHMP6, CBX2, CBX4, DNAH17, SOCS3, SYNGR2, CYTH1, PGS1, AATK, EIF4A3) 0.232260847981351 97 0.0874409373564419 0.872341034008045 4945 0.45724818027811 2 2 0 -6.81196292884311 LTS-011 NA NA NA NA LTS-011 chr17 79402631 79405369 2739 * BAHCC1 NA 0 NA 0.476 1 NA NA NA NA NA LTS-011 chr17 79405370 79429113 23744 * c(MIR3186, BAHCC1) 0.241927952571172 2 0.0381837661840736 0.563288392023206 189 0.195188979168017 2 2 0 -6.78869698086713 LTS-011 chr17 79429114 79429750 637 * BAHCC1 NA 0 NA 0.838 1 NA NA NA NA NA LTS-011 chr17 79429751 80285197 855447 * c(ALYREF, PPP1R27, CSNK1D, SLC25A10, NOTUM, CENPX, LRRC45, FASN, MYADML2, NPB, FSCN2, GCGR, CCDC57, GPS1, OXLD1, CCDC137, ARL16, MCRIP1, ARHGDIA, MAFG, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, BAHCC1, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, ACTG1, ASPSCR1, FAAP100, TSPAN10, SLC16A3, HGS, CD7, MAFG-AS1) 0.237229195542137 80 0.0645038010360728 0.863943420926615 2301 0.41671671430766 2 2 0 -6.75393231181145 LTS-011 chr17 80285198 80319729 34532 * c(TEX19, SECTM1) NA 0 NA 0.6 1 NA NA NA NA NA LTS-011 chr17 80319730 80333369 13640 * c(UTS2R, TEX19) 0.171 1 NA 0.523450808861206 64 0.170032856739607 1 1 0 -5.77046518409146 LTS-011 chr17 80333370 80350285 16916 * c(UTS2R, OGFOD3) NA 0 NA 0.943 1 NA NA NA NA NA LTS-011 chr17 80350286 81043175 692890 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, OGFOD3, ZNF750) 0.217480632074414 18 0.0817161514742631 0.994720002548512 942 0.468457472745998 3 3 0 -6.77528066268087 LTS-011 chr17 81043176 81083625 40450 * METRNL NA 0 NA 0.929577659712325 21 0.189202776079503 3 NA NA -5.77033788010817 LTS-011 chr18 116845 121801 4957 * ROCK1P1 NA 0 NA 0.527967130574828 50 0.292303845967423 1 NA NA -5.76507037535186 LTS-011 chr18 121802 166819 45018 * c(ROCK1P1, USP14) 0.168 1 NA 1.00266067713457 21 0.282697347840744 3 3 0 -5.76451807075823 LTS-011 chr18 166820 3278008 3111189 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.206948331796748 39 0.0782147981897956 1.0204610181155 1604 0.596764676650372 3 3 0 -6.74465784927985 LTS-011 chr18 3278009 3278110 102 * MYL12B NA 0 NA 1.483 1 NA NA NA NA NA LTS-011 chr18 3278111 3708530 430420 * c(MYL12B, DLGAP1-AS1, TGIF1, DLGAP1) 0.227091219107152 4 0.0257859781018031 1.52906089430341 295 0.604025938052874 7 6 1 -6.79693953815225 LTS-011 chr18 3708531 3729143 20613 * DLGAP1 NA 0 NA 0.906 1 NA NA NA NA NA LTS-011 chr18 3729144 6975032 3245889 * c(LINC01387, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LINC00668, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.220319645463477 34 0.0966424627022095 0.885116252659948 921 0.417898405499562 2 2 0 -6.85261430400482 LTS-011 chr18 6975033 6975927 895 * LAMA1 NA 0 NA 1.636 1 NA NA NA NA NA LTS-011 chr18 6975928 10488091 3512164 * c(LOC100192426, RALBP1, RAB31, APCDD1, RAB12, ANKRD12, MTCL1, LAMA1, LRRC30, NDUFV2, TWSG1, PTPRM, TXNDC2, VAPA, PPP4R1) 0.200498395549184 42 0.078832228975231 1.05138710418485 1621 0.482151581074794 3 3 0 -6.74286238750572 LTS-011 chr18 10488092 10488094 3 * APCDD1 NA 0 NA 1.48 1 NA NA NA NA NA LTS-011 chr18 10488095 10548481 60387 * c(APCDD1, NAPG) 0.280992701151187 2 0.0226274169979695 1.79633194450682 57 0.678857074293474 5 4 1 -6.74305178140004 LTS-011 chr18 10548482 11689562 1141081 * c(GNAL, PIEZO2, NAPG) 0.144502726302837 8 0.119310818573051 0.799393184203629 356 0.457232894993659 3 3 0 -7.03252796528623 LTS-011 chr18 11689563 11689622 60 * GNAL NA 0 NA 1.269 1 NA NA NA NA NA LTS-011 chr18 11689623 13671979 1982357 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6) 0.21567673979384 46 0.0859658734671275 1.04259562681409 1523 0.889455239091302 3 3 0 -6.7648191130967 LTS-011 chr18 13671980 13681665 9686 * FAM210A NA 0 NA 0.654 1 NA NA NA NA NA LTS-011 chr18 13681666 15006095 1324430 * c(MIR3156-2, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.305225326316946 13 0.137361165340098 0.805964584770324 450 0.536203639108704 2 2 0 -6.84413472153201 LTS-011 chr18 15006096 15006193 98 * character(0) NA 0 NA 0.835165824238344 3 0.158771324027147 2 NA NA -5.76441175384962 LTS-011 chr18 18529727 18530811 1085 * ROCK1 0.244 1 NA 0.296062514853652 29 0.216148370862704 0 0 0 -5.76563973684682 LTS-011 chr18 18530812 18535144 4333 * ROCK1 NA 0 NA 0.429337405031038 26 0.121350832775818 0 NA NA -5.76538817747707 LTS-011 chr18 18535145 23748652 5213508 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.25347918485475 14 0.123393434024828 0.821124240102604 2778 0.392826039559721 2 2 0 -6.73729743917158 LTS-011 chr18 23748653 23748855 203 * PSMA8 NA 0 NA 0.124 1 NA NA NA NA NA LTS-011 chr18 23748856 23759049 10194 * PSMA8 0.073 1 NA 0.365656270163504 40 0.302101858141104 0 0 0 -5.76490690752468 LTS-011 chr18 23759050 23772280 13231 * PSMA8 NA 0 NA 0.969 1 NA NA NA NA NA LTS-011 chr18 23772281 33552927 9780647 * c(CDH2, ZSCAN30, MIR302F, MIR3975, DSG2-AS1, ZNF271P, MAPRE2, INO80C, PSMA8, SLC25A52, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, GALNT1, KCTD1, AQP4, CCDC178, MIR187, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TAF4B, TTR, PCAT18, ZNF24, ASXL3, CHST9, C18orf21, ZNF397, NOL4, B4GALT6) 0.238002754932537 45 0.0881833890310987 0.820914903365226 3586 0.419778161729532 2 2 0 -6.74037336712959 LTS-011 chr18 33552928 33554841 1914 * C18orf21 NA 0 NA 0.666 1 NA NA NA NA NA LTS-011 chr18 33554842 44756949 11202108 * c(MIR4319, MIR4318, TCEB3CL2, MIR5583-2, MIR5583-1, HAUS1, LOXHD1, C18orf25, TCEB3C, SLC39A6, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, RNF165, ATP5A1, IER3IP1, TCEB3B, PIK3C3, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, EPG5, RIT2, KC6, MIR924HG, SKOR2, SLC14A1, SYT4, FHOD3, SLC14A2, KATNAL2, C18orf21, HDHD2, PSTPIP2, PIAS2) 0.276135921042632 48 0.129165131539722 0.599259185926704 3173 0.345418289400761 1 1 0 -6.82945752085071 LTS-011 chr18 44756950 44757256 307 * SKOR2 NA 0 NA 0.317 1 NA NA NA NA NA LTS-011 chr18 44757257 44907025 149769 * SKOR2 0.403 1 NA 0.384142467204585 80 0.29133841733922 0 0 0 -5.76584231092839 LTS-011 chr18 44907026 45157911 250886 * character(0) NA 0 NA 0.662 1 NA NA NA NA NA LTS-011 chr18 45157912 47800276 2642365 * c(SNORD58C, MIR1539, MIR4320, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, CFAP53, SNORD58B, SNORD58A, SMAD2, SMAD7, MBD1, MYO5B, C18orf32, DYM, RPL17, SCARNA17, LIPG, CTIF) 0.370100994039538 20 0.107216995903291 0.688886039811481 1146 0.304426581067424 1 1 0 -7.10023584054206 LTS-011 chr18 47800277 47800561 285 * MBD1 NA 0 NA 1.635 1 NA NA NA NA NA LTS-011 chr18 47800562 47814668 14107 * c(CXXC1, MBD1) 0.360578541912615 2 0.0318198051533947 0.944194914345263 153 0.368651381838275 6 4 2 -6.75970574980924 LTS-011 chr18 47814669 47902104 87436 * c(SKA1, CXXC1) NA 0 NA 0.577 1 NA NA NA NA NA LTS-011 chr18 47902105 52895626 4993522 * c(LINC01630, POLI, STARD6, C18orf54, DCC, SKA1, DYNAP, SMAD4, ME2, MEX3C, ELAC1, MAPK4, RAB27B, SNORA37, TCF4, CCDC68, MRO, MBD2) 0.312283174414291 41 0.124143828859523 0.565435343523992 1574 0.316097247531565 1 1 0 -6.88096422655026 LTS-011 chr18 52895627 52896091 465 * TCF4 NA 0 NA 0.938 1 NA NA NA NA NA LTS-011 chr18 52896092 54358594 1462503 * c(LINC01539, MIR4529, WDR7, TCF4, TXNL1) 0.332011036738125 2 0.0332340187157677 0.745206951537554 321 0.307954280285412 1 1 0 -7.12206514973478 LTS-011 chr18 54358595 54358924 330 * WDR7 NA 0 NA 0.583 1 NA NA NA NA NA LTS-011 chr18 54358925 55217969 859045 * c(LINC-ROR, FECH, WDR7, BOD1L2, ST8SIA3, ONECUT2) 0.170999627664722 11 0.171833905004487 0.52881910996189 647 0.337303494417018 1 1 0 -7.27032783604019 LTS-011 chr18 55217970 61225685 6007716 * c(LOC100505549, MIR3591, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, PIGN, KDSR, CDH20, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ATP8B1, SERPINB5, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TNFRSF11A, SERPINB12, SEC11C, VPS4B) 0.332154262760998 74 0.110071866564348 0.651169703301035 2960 0.343162507890867 1 1 0 -6.88926871881561 LTS-011 chr18 61225686 63549226 2323541 * c(CDH7, LINC00305, HMSD, LOC284294, LINC01538, SERPINB2, SERPINB8, SERPINB10, SERPINB13, SERPINB3, SERPINB4, SERPINB7, SERPINB12, SERPINB11) 0.320350016804208 9 0.132152374174662 0.447559525820193 679 0.193832679206638 0 0 0 -7.41895454414974 LTS-011 chr18 63549227 76757395 13208169 * c(LOC100131655, LINC01541, LOC100505817, MIR5011, TSHZ1, CD226, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, GALR1, RTTN, SALL3, ZADH2, SMIM21, LINC00908, CDH19, TIMM21, LOC339298, LOC400655, LINC00909, C18orf65, MBP, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, NETO1, CNDP1, DSEL, SOCS6, ZNF516) 0.316413649488121 40 0.112377223602541 0.653215672641266 2900 0.317593031927749 1 1 0 -7.15138791032593 LTS-011 chr18 76757396 76829330 71935 * SALL3 NA 0 NA 2.742 1 NA NA NA NA NA LTS-011 chr18 76829331 76953331 124001 * ATP9B NA 0 NA 1.32336003618333 57 0.764233486609386 4 NA NA -5.76512034008918 LTS-011 chr18 76953332 76966878 13547 * ATP9B NA 0 NA 0.556 1 NA NA NA NA NA LTS-011 chr18 76966879 77926862 959984 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, ATP9B, HSBP1L1, NFATC1, RBFA, PQLC1, PARD6G, CTDP1) 0.341598693606364 30 0.0611247076480327 0.622046767537854 812 0.263703620342336 1 1 0 -6.77558867567394 LTS-011 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.632027857384307 17 0.251895330153104 1 NA NA -5.76572904623099 LTS-011 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.327 1 NA 0.665198287226101 19 0.367130591676898 1 1 0 -5.7711980280765 LTS-011 chr19 282754 441000 158247 * c(C2CD4C, SHC2, THEG, MIER2, PLPP2) 0.339621624211138 7 0.114491214052599 0.608023774219719 232 0.271466688031612 1 1 0 -6.74103415725482 LTS-011 chr19 441001 463866 22866 * c(SHC2, ODF3L2) NA 0 NA 1.144 1 NA NA NA NA NA LTS-011 chr19 463867 1062328 598462 * c(MED16, MIR3187, MIR4745, FSTL3, ABCA7, GRIN3B, MISP, CNN2, CFD, ARID3A, ELANE, FGF22, ODF3L2, GZMM, PRSS57, PALM, POLRMT, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, BSG, PLPPR3, MADCAM1, KISS1R, R3HDM4, TMEM259, TPGS1, CDC34) 0.249299168024278 82 0.091843516683324 0.84308331092789 1508 0.423019801342934 2 2 0 -6.73657622264865 LTS-011 chr19 1062329 1063565 1237 * ABCA7 NA 0 NA 1.404 1 NA NA NA NA NA LTS-011 chr19 1063566 1388790 325225 * c(ABCA7, CIRBP, CIRBP-AS1, EFNA2, SBNO2, ARHGAP45, CBARP, GPX4, NDUFS7, ATP5D, POLR2E, C19orf24, STK11, MUM1, MIDN) 0.247879022726153 29 0.0451877582707634 1.09327249624306 791 0.513338590776834 2 2 0 -6.79861428451248 LTS-011 chr19 1388791 1835010 446220 * c(LOC100288123, MIR1909, APC2, UQCR11, PLK5, C19orf25, ATP8B3, GAMT, DAZAP1, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, MBD3, PCSK4, REXO1, RPS15, TCF3, REEP6) 0.200521005190072 28 0.0751173596771594 0.790030157608941 1267 0.387600601122684 3 3 0 -6.84991670568204 LTS-011 chr19 1835011 1911912 76902 * c(SCAMP4, ADAT3, REXO1, ABHD17A, KLF16) 0.225204067248609 3 0.0361985266735172 1.73526235327652 51 0.840990374615595 7 6 1 -6.74316757557684 LTS-011 chr19 1911913 2444593 532681 * c(MIR1227, MIR4321, IZUMO4, SCAMP4, ADAT3, JSRP1, MOB3A, CSNK1G2, CSNK1G2-AS1, TIMM13, AMH, MKNK2, TMPRSS9, C19orf35, OAZ1, LSM7, PLEKHJ1, BTBD2, SPPL2B, LINGO3, SF3A2, DOT1L, LMNB2, AP3D1) 0.202828889604106 38 0.0691218027331953 0.932573361258741 1381 0.415316803311001 3 3 0 -6.75387876944188 LTS-011 chr19 2444594 2456654 12061 * LMNB2 NA 0 NA 1.761 1 NA NA NA NA NA LTS-011 chr19 2456655 2576204 119550 * c(GNG7, GADD45B, LMNB2) 0.27114970260881 3 0.0182300118851671 1.59181132321702 64 0.490748284480178 9 7 2 -6.76995107116595 LTS-011 chr19 2576205 2642750 66546 * GNG7 NA 0 NA 0.627 1 NA NA NA NA NA LTS-011 chr19 2642751 3282477 639727 * c(ZNF554, ZNF57, DIRAS1, ZNF555, AES, GNA11, GNA15, GNG7, SLC39A3, NCLN, ZNF77, CELF5, SGTA, THOP1, TLE2, TLE6, ZNF556, S1PR4) 0.313922387290581 19 0.0647525654846362 0.737814400905715 840 0.316928775916477 1 1 0 -6.89986606333039 LTS-011 chr19 3282478 3284769 2292 * CELF5 NA 0 NA 1.627 1 NA NA NA NA NA LTS-011 chr19 3284770 3578291 293522 * c(C19orf71, HMG20B, MFSD12, SMIM24, NFIC, FZR1, CELF5, DOHH) 0.250875975437724 2 0.0261629509039023 0.957174496740502 309 0.518367966278621 2 2 0 -6.77440947769602 LTS-011 chr19 3578292 3578490 199 * HMG20B NA 0 NA 0.405 1 NA NA NA NA NA LTS-011 chr19 3578491 3965016 386526 * c(HMG20B, MRPL54, GIPC3, DAPK3, ZFR2, PIP5K1C, TJP3, NMRK2, CACTIN-AS1, MATK, CACTIN, TBXA2R, MIR637, RAX2, ATCAY, APBA3) 0.211846033254836 29 0.0647307610689958 0.695768187155269 918 0.337933277864418 2 2 0 -6.94124652585618 LTS-011 chr19 3965017 3969547 4531 * DAPK3 NA 0 NA 1.606 1 NA NA NA NA NA LTS-011 chr19 3969548 4110732 141185 * c(DAPK3, EEF2, SNORD37, ZBTB7A, PIAS4, MAP2K2) 0.237632897901818 9 0.0598145281497545 0.933775098636715 249 0.370972285598551 2 2 0 -6.75544291889561 LTS-011 chr19 4110733 4310327 199595 * c(EBI3, TMIGD2, ANKRD24, SIRT6, CCDC94, MAP2K2, SHD, FSD1, CREB3L3) 0.250852259602303 17 0.0828941121161775 0.654579520176675 431 0.351999365964562 2 2 0 -6.78064757147697 LTS-011 chr19 4310328 4310422 95 * FSD1 NA 0 NA 1.123 1 NA NA NA NA NA LTS-011 chr19 4310423 6896442 2586020 * c(LOC100128568, DPP9-AS1, CHAF1A, SH2D3A, MIR3940, MIR4747, MIR4746, PLIN3, TUBB4A, SEMA6B, LRG1, ACER1, C19orf70, TNFAIP8L1, NDUFA11, TICAM1, ZNRF4, PRR22, ADGRE1, KDM4B, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, MIR7-3HG, SLC25A41, UHRF1, GTF2F1, HSD11B1L, VMAC, MIR7-3, MLLT1, PLIN5, NRTN, FEM1A, STAP2, MYDGF, PSPN, GPR108, DUS3L, PTPRS, RFX2, SAFB, ARRDC5, SH3GL1, C3, PLIN4, VAV1, SLC25A23, FSD1, NA NA NA NA NA NA NA NA NA LTS-011 DENND1C, UBXN6, ACSBG2, CLPP, CAPS, ALKBH7, HDGFRP2, MPND, RANBP3, KHSRP, TNFSF14, TNFSF9, DPP9, CRB3, TRIP10, LONP1, SAFB2, CD70) 0.235227373640206 85 0.0958888026048193 0.84226806841115 3883 0.549591185363884 2 2 0 -6.7463478253549 LTS-011 NA NA NA NA LTS-011 chr19 6896443 7006045 109603 * c(ADGRE1, ADGRE4P, FLJ25758) 0.264973346708702 7 0.0896655160131517 0.544294434468676 212 0.281638342274663 2 2 0 -6.89168669061619 LTS-011 chr19 7006046 7011773 5728 * FLJ25758 NA 0 NA 0.942 1 NA NA NA NA NA LTS-011 chr19 7011774 8670623 1658850 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, MBD3L5, CD209, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, NA NA NA NA NA NA NA NA NA LTS-011 FBN3, RAB11B, PEX11G) 0.224009470239308 70 0.0707185261292131 0.827391992800069 2932 0.430999935015055 2 2 0 -6.79015158942168 LTS-011 NA NA NA NA LTS-011 chr19 8670624 8807732 137109 * ADAMTS10 NA 0 NA 0.668 1 NA NA NA NA NA LTS-011 chr19 8807733 9024994 217262 * c(ZNF558, ACTL9, OR2Z1, MBD3L1, MUC16) 0.283563079832629 17 0.150247320618177 0.630241300675113 428 0.42813706525191 1 1 0 -6.78251277953278 LTS-011 chr19 9024995 9027310 2316 * MUC16 0 1 NA 0.711566405614978 13 0.654021935647186 2 2 0 -5.76446816290179 LTS-011 chr19 9027311 9089515 62205 * MUC16 0.125878749820272 36 0.0844045201151752 0.685743414550112 777 0.745743196970286 6 6 0 -6.7850451682025 LTS-011 chr19 9089516 9225685 136170 * c(OR7G1, OR1M1, OR7G2, MUC16) 0.239 1 NA 0.537968299490263 101 0.25446577392453 1 1 0 -5.78221780769353 LTS-011 chr19 9225686 10200810 975125 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, C3P1, OR7G3, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.199307354435154 33 0.107243404120126 0.615717461444092 1310 0.401648886908797 2 2 0 -7.11154418299203 LTS-011 chr19 10200811 10201916 1106 * C19orf66 NA 0 NA 1.847 1 NA NA NA NA NA LTS-011 chr19 10201917 11665217 1463301 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, NA NA NA NA NA NA NA NA NA LTS-011 MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.245608918597217 86 0.0757982102232673 0.858140120444863 3603 0.417570274061888 2 2 0 -6.74747179667799 LTS-011 NA NA NA NA LTS-011 chr19 11665218 11685840 20623 * c(ACP5, ELOF1) NA 0 NA 0.486 1 NA NA NA NA NA LTS-011 chr19 11685841 12759271 1073431 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, MAN2B1, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.183225144896627 11 0.147093909397426 0.630514886426665 1792 0.385735693535607 2 2 0 -7.10736526766568 LTS-011 chr19 12759272 12760002 731 * MAN2B1 NA 0 NA 1.236 1 NA NA NA NA NA LTS-011 chr19 12760003 12963143 203141 * c(RNASEH2A, DHPS, MAST1, SNORD41, HOOK2, TNPO2, JUNB, MAN2B1, ASNA1, WDR83OS, BEST2, PRDX2, C19orf43, RTBDN, FBXW9, WDR83) 0.263921314562435 9 0.0720156233049468 0.885749357684392 797 0.429682889785646 2 2 0 -6.77629816723829 LTS-011 chr19 12963144 12976627 13484 * MAST1 NA 0 NA 0.959231060743405 40 0.218966710969546 3 NA NA -5.76506181500936 LTS-011 chr19 12976628 12976800 173 * MAST1 NA 0 NA 2.473 1 NA NA NA NA NA LTS-011 chr19 12976801 12985576 8776 * MAST1 0.334 1 NA 1.31824446408442 73 0.384995600302995 4 4 0 -5.76458817815805 LTS-011 chr19 12985577 13341037 355461 * c(KLF1, NACC1, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, LYL1, NFIX, TRMT1, RAD23A, CACNA1A, CALR, STX10, GADD45GIP1, IER2) 0.340890062602984 11 0.124931253823125 1.9123107268054 661 0.851990244856144 7 5 2 -6.73866150666407 LTS-011 chr19 13341038 13341092 55 * CACNA1A NA 0 NA 1.296 1 NA NA NA NA NA LTS-011 chr19 13341093 14682914 1341822 * c(LOC100507373, DDX39A, GIPC1, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, DNAJB1, NANOS3, PALM3, MIR181C, NDUFB7, CC2D1A, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RFX1, C19orf67, ZSWIM4, MIR639, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, SAMD1, DCAF15, IL27RA, TECR, ADGRE5) 0.430450060079792 31 0.0884014304365365 1.25003305565044 1816 0.567935675466918 4 2 2 -6.79381042383184 LTS-011 chr19 14682915 14693832 10918 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-011 chr19 14693833 15218412 524580 * c(OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.354882546798639 20 0.189002220816805 0.758497391520536 656 0.515779330976366 2 1 1 -6.77640500452025 LTS-011 chr19 15218413 15219897 1485 * SYDE1 NA 0 NA 1.148 1 NA NA NA NA NA LTS-011 chr19 15219898 15582868 362971 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3, SYDE1) 0.266419102624083 9 0.21897659692305 1.20577768176024 926 0.57340191794775 5 4 1 -6.75666401858957 LTS-011 chr19 15582869 15586305 3437 * PGLYRP2 NA 0 NA 0.807 1 NA NA NA NA NA LTS-011 chr19 15586306 16146800 560495 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.416694204386831 11 0.142922929008482 0.771805128891508 550 0.422102476862753 2 1 1 -6.7442448996949 LTS-011 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 2.951 1 NA NA NA NA NA LTS-011 chr19 16178447 16232634 54188 * c(RAB8A, TPM4) 0.400487094015725 7 0.0793908355032541 1.92713827799079 54 0.784204690661402 7 4 3 -6.73320312920979 LTS-011 chr19 16232635 16236243 3609 * RAB8A NA 0 NA 1.098 1 NA NA NA NA NA LTS-011 chr19 16236244 17314057 1077814 * c(KLF2, CHERP, CIB3, CALR3, SIN3B, FAM32A, CPAMD8, NWD1, RAB8A, MYO9B, EPS15L1, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, F2RL3, HAUS8, MED26) 0.400385462486166 38 0.15919456993034 1.12340141366612 1637 0.503895675661678 4 2 2 -6.75329158173626 LTS-011 chr19 17314058 17316065 2008 * MYO9B NA 0 NA 1.295 1 NA NA NA NA NA LTS-011 chr19 17316066 17720879 404814 * c(TMEM221, NXNL1, ANKLE1, FAM129C, NR2F6, UNC13A, PGLS, BABAM1, SLC27A1, MYO9B, USE1, ANO8, MRPL34, BST2, DDA1, ABHD8, OCEL1, COLGALT1, PLVAP, USHBP1, GTPBP3, MVB12A) 0.404157012149992 14 0.169586698628307 1.36843207733903 1140 0.563226368954065 5 3 2 -6.73655573403125 LTS-011 chr19 17720880 17799442 78563 * UNC13A NA 0 NA 0.935746464049778 217 0.331579053878278 3 NA NA -5.7676489146293 LTS-011 chr19 17799443 17830308 30866 * MAP1S NA 0 NA 1.743 1 NA NA NA NA NA LTS-011 chr19 17830309 18980172 1149864 * c(MIR3188, MIR3189, B3GNT3, IFI30, CCDC124, LRRC25, COMP, SSBP4, MAST3, FCHO1, CRTC1, FKBP8, TMEM59L, LSM4, GDF1, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, JUND, KCNN1, PDE4C, ISYNA1, PIK3R2, PGPEP1, C19orf60, MAP1S, KLHL26, RAB3A, UPF1, RPL18A, SLC5A5, LOC729966, UBA52, KXD1, KIAA1683, ELL, MPV17L2, CRLF1, GDF15) 0.452242776599246 60 0.0646668122777789 1.27674606901668 2243 0.568768709806296 4 2 2 -7.07363533247367 LTS-011 chr19 18980173 18992993 12821 * c(CERS1, GDF1) NA 0 NA 1.24305581189397 23 0.488952647706917 4 NA NA -5.76441482242085 LTS-011 chr19 18992994 19018866 25873 * c(CERS1, COPE, GDF1, HOMER3) 0.304 1 NA 0.672297638011418 55 0.175957702676845 1 1 0 -5.76982028191588 LTS-011 chr19 19018867 24115369 5096503 * c(ZNF730, ZNF737, MEF2B, ZNF729, MIR1270, SUGP2, COPE, ZNF257, NR2C2AP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, MAU2, SLC25A42, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, RPSAP58, LINC00664, HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, TM6SF2, DDX49, GATAD2A, TMEM161A, ZNF253, ATP13A1, ZNF492, SUGP1, LOC641367, ZNF826P, BORCS8, ZNF726, ZNF14, NA NA NA NA NA NA NA NA NA LTS-011 ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, PBX4, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ARMC6, ZNF101, HOMER3) 0.242017489489663 83 0.0726812952067837 0.781782308427476 3250 0.388151572305303 2 2 0 -6.76612438316721 LTS-011 NA NA NA NA LTS-011 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.673463942108773 97 0.396235024162242 1 NA NA -5.77419596585948 LTS-011 chr19 28247625 28247670 46 * character(0) 0.34 1 NA 1.435 1 NA NA NA NA NA LTS-011 chr19 28247671 31039039 2791369 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, ZNF536) 0.282182469201168 9 0.0981160027722287 2.02091309766439 403 0.974944398979724 8 6 2 -6.74893261647201 LTS-011 chr19 31039040 35823072 4784033 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, ZNF30, PDCD5, FAAP24, NA NA NA NA NA NA NA NA NA LTS-011 TDRD12, CD22, NA, KIAA0355, ZNF536) 0.238493803263907 83 0.0825860080262761 0.768942721516066 3053 0.413095085648685 2 2 0 -6.79003763909414 LTS-011 NA NA NA NA LTS-011 chr19 35823073 35823094 22 * CD22 NA 0 NA 0.379 1 NA NA NA NA NA LTS-011 chr19 35823095 35851141 28047 * c(MIR5196, FFAR1, FFAR3, CD22) NA 0 NA 0.506240287676765 130 0.265134391840127 1 NA NA -5.77213590819497 LTS-011 chr19 35851142 35863609 12468 * FFAR3 NA 0 NA 0.0689624454728766 39 0.0429605003275574 0 NA NA -10.6857489717635 LTS-011 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.261 1 NA NA NA NA NA LTS-011 chr19 35863628 36229193 365566 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR2, SBSN, KRTDAP, ATP4A, RBM42, DMKN, KMT2B) 0.252228619187481 23 0.0926868799103189 0.753901262779533 949 0.311951483142432 2 2 0 -6.74902348816493 LTS-011 chr19 36229194 36250482 21289 * c(HSPB6, PROSER3, U2AF1L4, PSENEN, LIN37, IGFLR1, KMT2B) 0.335 1 NA 1.28226152489476 168 0.407415433303279 4 4 0 -5.76455322953797 LTS-011 chr19 36250483 36250637 155 * PROSER3 NA 0 NA 0.38 1 NA NA NA NA NA LTS-011 chr19 36250638 36602779 352142 * c(HCST, ARHGAP33, PROSER3, SYNE4, THAP8, CLIP3, WDR62, APLP1, NPHS1, PRODH2, SDHAF1, OVOL3, TYROBP, LRFN3, KIRREL2, NFKBID, ALKBH6) 0.164907717831415 22 0.101444939536557 0.7620494870475 1105 0.489829058352991 3 3 0 -6.86334182696084 LTS-011 chr19 36602780 36603722 943 * OVOL3 NA 0 NA 2.061 1 NA NA NA NA NA LTS-011 chr19 36603723 36673878 70156 * c(TBCB, COX7A1, ZNF565, POLR2I, OVOL3, CAPNS1) 0.27279450965207 5 0.0711596795945569 1.05679408862647 157 0.440303709971351 5 4 1 -6.76630687467154 LTS-011 chr19 36673879 38697577 2023699 * c(LOC100134317, LINC00665, ZNF571-AS1, LOC100631378, ZNF573, ZNF420, ZNF565, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, SIPA1L3, ZNF345, ZFP82, ZNF790-AS1, LOC284412, HKR1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, ZFP14, ZNF529, LOC644189, LOC644554, LOC728752, ZNF146, WDR87, ZNF527, ZNF607, ZNF382, ZNF566, ZNF461, ZNF585B) 0.220344837051642 64 0.0768462554338619 0.650024431360027 2383 0.302337988495144 2 2 0 -7.399837564613 LTS-011 chr19 38697578 38697668 91 * SIPA1L3 NA 0 NA 0.843 1 NA NA NA NA NA LTS-011 chr19 38697669 38911782 214114 * c(SPINT2, RASGRP4, FAM98C, GGN, SIPA1L3, SPRED3, PSMD8, CATSPERG, C19orf33, DPF1, YIF1B, KCNK6, PPP1R14A) 0.209740997443456 16 0.0744721144679895 0.852462176733247 641 0.421843823982405 3 3 0 -6.77658095434049 LTS-011 chr19 38911783 38912619 837 * RASGRP4 NA 0 NA 1.23 1 NA NA NA NA NA LTS-011 chr19 38912620 39027445 114826 * c(RASGRP4, RYR1) 0.104355632316965 7 0.145490467696259 0.641771433873212 430 0.444478635551719 4 4 0 -6.97264973016707 LTS-011 chr19 39027446 39028497 1052 * RYR1 NA 0 NA 1.131 1 NA NA NA NA NA LTS-011 chr19 39028498 39380008 351511 * c(MAP4K1, RINL, CAPN12, ECH1, SIRT2, EIF3K, HNRNPL, LGALS4, LGALS7, RYR1, LGALS7B, ACTN4) 0.0670238476943099 4 0.145334097857316 1.05226481882488 808 0.648088115766888 6 6 0 -6.91598555346155 LTS-011 chr19 39380009 39805920 425912 * c(IFNL4, PAK4, FBXO17, FBXO27, SIRT2, IFNL2, IFNL3, IFNL1, NCCRP1, SYCN, ACP7, NFKBIB, SARS2, LRFN1, MRPS12, CCER2) 0.264674105300545 13 0.0531955752931504 0.684259792565319 568 0.312042275532224 2 2 0 -6.88635018421832 LTS-011 chr19 39805921 39819006 13086 * c(LRFN1, GMFG) NA 0 NA 1.013 1 NA NA NA NA NA LTS-011 chr19 39819007 39949006 130000 * c(MIR4530, PAF1, SAMD4B, MED29, RPS16, PLEKHG2, SUPT5H, ZFP36, GMFG) 0.258598065034719 10 0.044231210700138 0.977931850820288 442 0.375807595815947 2 2 0 -6.80288694270408 LTS-011 chr19 39949007 40276811 327805 * c(LOC100129935, DLL3, CLC, EID2B, LGALS16, EID2, LGALS13, LEUTX, SELENOV, LGALS17A, LGALS14, SUPT5H, TIMM50) 0.224398336472581 14 0.0796906105296816 0.715766594802572 475 0.410798825351363 2 2 0 -6.79428306573647 LTS-011 chr19 40276812 40316359 39548 * DYRK1B NA 0 NA 1.082 1 NA NA NA NA NA LTS-011 chr19 40316360 40337017 20658 * c(FBL, DYRK1B) 0 1 NA 1.2548851170821 98 0.373440870609772 4 4 0 -5.7644513768923 LTS-011 chr19 40337018 40354044 17027 * c(FBL, FCGBP) NA 0 NA 0.54 1 NA NA NA NA NA LTS-011 chr19 40354045 40376722 22678 * FCGBP 0.249909050476368 3 0.0836679946773755 0.600900999562884 84 0.387554556150634 2 2 0 -6.74289048833337 LTS-011 chr19 40376723 40376832 110 * FCGBP NA 0 NA 0.374 1 NA NA NA NA NA LTS-011 chr19 40376833 40399881 23049 * FCGBP NA 0 NA 0.285991900337671 39 0.278822069228386 0 NA NA -5.78393368845072 LTS-011 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 0.921 1 NA NA NA NA NA LTS-011 chr19 40405935 40904655 498721 * c(C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, ZNF546, MAP3K10, PSMC4, PRX, MIR641, CNTD2, FCGBP) 0.241289815516359 21 0.107070292887652 0.63047149117288 1125 0.300443752449478 2 2 0 -6.94167426705938 LTS-011 chr19 40904656 40971697 67042 * c(SERTAD3, SERTAD1, PRX, BLVRB) 0.286750326611128 4 0.0366640150556373 1.30015627486039 73 0.434845484637812 5 4 1 -6.74051718039596 LTS-011 chr19 40971698 40978463 6766 * c(SPTBN4, BLVRB) NA 0 NA 0.781 1 NA NA NA NA NA LTS-011 chr19 40978464 41072224 93761 * SPTBN4 0.280983026478746 3 0.0382143079661707 0.67029394347768 197 0.21496571234669 2 2 0 -7.25231656844236 LTS-011 chr19 41072225 41324673 252449 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf54, RAB4B, SPTBN4, SNRPA, COQ8B, ITPKC, MIA, LTBP4, NUMBL, SHKBP1) 0.267115254513907 19 0.0597764842574021 0.984426079611107 740 0.402255978878185 2 2 0 -6.84350175995057 LTS-011 chr19 41324674 41324684 11 * character(0) 0.283 1 NA 0.263 1 NA NA NA NA NA LTS-011 chr19 41324685 41765771 441087 * c(CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, CYP2S1, AXL) 0.209031986615796 21 0.121184825389823 0.637569446402333 560 0.484105974559831 2 2 0 -6.85346346763352 LTS-011 chr19 41765772 41770424 4653 * c(HNRNPUL1, AXL) NA 0 NA 1.724 1 NA NA NA NA NA LTS-011 chr19 41770425 41946347 175923 * c(HNRNPUL1, B3GNT8, ATP5SL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.208504318002635 5 0.108810385533735 0.969681935197355 384 0.427856231450298 3 3 0 -6.74239858526368 LTS-011 chr19 41946348 41949123 2776 * ERICH4 NA 0 NA 0.465 1 NA NA NA NA NA LTS-011 chr19 41949124 42355868 406745 * c(ERICH4, PCAT19, CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, DMRTC2, CEACAM21) NA 0 NA 0.537382418525699 387 0.188222256705099 1 NA NA -5.86210786937292 LTS-011 chr19 42355869 42364719 8851 * c(RPS19, DMRTC2) NA 0 NA 1.345 1 NA NA NA NA NA LTS-011 chr19 42364720 42470794 106075 * c(RABAC1, ATP1A3, RPS19, ARHGEF1, CD79A) 0.212205171429789 3 0.149843251432956 0.884679843074082 245 0.431720817119613 3 3 0 -6.74697662174821 LTS-011 chr19 42470795 42510141 39347 * c(GRIK5, ATP1A3) 0.165346451802692 3 0.162247752937701 0.535400089318463 154 0.630762318948142 4 4 0 -6.77377070526058 LTS-011 chr19 42510142 42510749 608 * GRIK5 NA 0 NA 0.758 1 NA NA NA NA NA LTS-011 chr19 42510750 42813788 303039 * c(MIR4323, LOC100505622, ZNF526, DEDD2, ERF, CIC, PRR19, GRIK5, GSK3A, PAFAH1B3, POU2F2, ZNF574) 0.234861203179597 11 0.132130858002072 0.869864061232773 685 0.461734877386277 2 2 0 -6.74085809937152 LTS-011 chr19 42813789 43022978 209190 * c(LIPE-AS1, MEGF8, PRR19, TMEM145, CXCL17, LIPE, CEACAM1, CNFN) 0.136083398689011 3 0.159092216444845 0.695828360047296 605 0.363129818534146 3 3 0 -6.95368422675403 LTS-011 chr19 43022979 43920751 897773 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P, TEX101) 0.139016317436782 9 0.151097650544276 0.449114679553521 320 0.438611263822934 1 1 0 -7.7788040349273 LTS-011 chr19 43920752 43922052 1301 * TEX101 NA 0 NA 0.86 1 NA NA NA NA NA LTS-011 chr19 43922053 44302519 380467 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF576, TEX101) 0.230887695868371 18 0.13532831054139 0.895156723432696 748 0.409222456292998 2 2 0 -6.75263703225729 LTS-011 chr19 44302520 44302618 99 * LYPD5 NA 0 NA 0.882 1 NA NA NA NA NA LTS-011 chr19 44302619 45117067 814449 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, IGSF23, ZNF285, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, CEACAM22P, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.202583886028219 40 0.0864661042229103 0.67090858462845 1156 0.365922057585239 2 2 0 -7.01044797838817 LTS-011 chr19 45117068 45117169 102 * IGSF23 NA 0 NA 0.817 1 NA NA NA NA NA LTS-011 chr19 45117170 45596481 479312 * c(APOC4-APOC2, MIR4531, TOMM40, CLASRP, CLPTM1, IGSF23, ZNF296, CBLC, PPP1R37, APOC1, APOC1P1, APOC2, APOE, CEACAM16, BCAM, CEACAM19, PVR, NECTIN2, RELB, BCL3, GEMIN7) 0.236260310422957 14 0.0884514208260888 0.901547856744761 952 0.387564331938491 2 2 0 -6.75998122715925 LTS-011 chr19 45596482 45596633 152 * PPP1R37 NA 0 NA 0.532 1 NA NA NA NA NA LTS-011 chr19 45596634 45900308 303675 * c(PPP1R13L, CKM, KLC3, ERCC2, PPP1R37, NKPD1, BLOC1S3, MARK4, TRAPPC6A, EXOC3L2) 0.212660974589628 10 0.0697475606901218 0.732849763245202 613 0.294083756985635 2 2 0 -6.88695256069467 LTS-011 chr19 45900309 45901172 864 * PPP1R13L NA 0 NA 0.976 1 NA NA NA NA NA LTS-011 chr19 45901173 46417572 516400 * c(EML2-AS1, MIR642B, PPP1R13L, CD3EAP, PPM1N, SIX5, DMPK, DMWD, ERCC1, FBXO46, FOSB, EML2, IRF2BP1, GIPR, GPR4, FOXA3, MYPOP, NANOS2, BHMG1, MIR330, QPCTL, RTN2, SNRPD2, MIR642A, VASP, OPA3, RSPH6A, SYMPK) 0.221753734664384 31 0.0625073243020196 1.11756902031235 1292 0.447450403189283 3 3 0 -6.84549686580836 LTS-011 chr19 46417573 46417578 6 * NANOS2 NA 0 NA 0.888 1 NA NA NA NA NA LTS-011 chr19 46417579 48284585 1867007 * c(SNAR-E, MIR3191, MIR3190, MIR320E, NAPA-AS1, PPP5D1, DACT3-AS1, SAE1, RNU6-66P, KPTN, AP2S1, DACT3, IGFL2, ZC3H4, INAFM1, PRKD2, CCDC9, BBC3, C5AR2, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, NANOS2, IGFL1, IGFL3, IGFL4, NOVA2, NPAS1, TMEM160, PNMAL1, PPP5C, MEIS3, PTGIR, PNMAL2, SELENOW, HIF3A, SLC1A5, SLC8A2, SNORD23, C5AR1, CCDC61, MIR769, FKRP, CALM3, CCDC8, ZNF541, NAPA, PGLYRP1, LOC93429, GNG8, NA NA NA NA NA NA NA NA NA LTS-011 DHX34) 0.268560040732905 34 0.0640441650754689 0.824643063857128 2471 0.362855269468403 2 2 0 -6.81061167837939 LTS-011 NA NA NA NA LTS-011 chr19 48284586 48304501 19916 * c(TPRX1, SELENOW) NA 0 NA 0.435 1 NA NA NA NA NA LTS-011 chr19 48304502 48593644 289143 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SULT2A1, PLA2G4C) 0.184358864053996 12 0.13659770063285 0.534786934881507 351 0.859415503743613 3 3 0 -6.83399736552012 LTS-011 chr19 48593645 48598721 5077 * PLA2G4C NA 0 NA 0.745 1 NA NA NA NA NA LTS-011 chr19 48598722 48821707 222986 * c(CARD8-AS1, ZNF114, CARD8, LIG1, PLA2G4C, CCDC114) 0.25423113210827 28 0.084882676578138 0.769564319813515 510 0.351788478522856 2 2 0 -6.74249487760812 LTS-011 chr19 48821708 48821710 3 * CCDC114 NA 0 NA 0.861 1 NA NA NA NA NA LTS-011 chr19 48821711 50342088 1520378 * c(SNAR-G1, SNAR-G2, MIR4324, PTOV1-AS1, GFY, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, PTH2, CGB1, CGB2, LMTK3, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, SPACA4, ADM5, EMP3, FCGRT, FLT3LG, RPL13A, SYNGR4, PPP1R15A, FTL, FUT1, FUT2, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, SLC6A16, GRIN2D, GYS1, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, MIR150, NTF4, NUCB1, NOSIP, NA NA NA NA NA NA NA NA NA LTS-011 HSD17B14, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, SULT2B1, TULP2, CA11, FUZ, MED25, BCL2L12, GRWD1, SNORD35B, TEAD2, PPFIA3, CYTH2, CCDC114, CGB5, CGB7, CGB8, CD37) 0.250675375682613 99 0.0609628491416615 0.948643723659128 4150 0.465730966818432 2 2 0 -6.8351164006768 LTS-011 NA NA NA NA LTS-011 chr19 50342089 50354013 11925 * c(PTOV1-AS1, PTOV1) NA 0 NA 1.38 1 NA NA NA NA NA LTS-011 chr19 50354014 50436353 82340 * c(PTOV1-AS1, MIR4749, MIR4750, MIR4751, PNKP, ATF5, NUP62, IL4I1, PTOV1, TBC1D17, AKT1S1) 0.312621960734407 10 0.071775963169357 1.19565226530677 421 0.448338334619441 4 3 1 -6.76227147902583 LTS-011 chr19 50436354 50452524 16171 * c(MIR4751, SIGLEC11, ATF5) NA 0 NA 0.664 1 NA NA NA NA NA LTS-011 chr19 50452525 50827364 374840 * c(SNAR-B2, SNAR-D, SIGLEC11, IZUMO2, ZNF473, KCNC3, SIGLEC16, LOC400710, VRK3, MYH14) 0.189602726912376 18 0.0841542506858491 0.740305313161926 600 0.400505248295295 3 3 0 -6.87784124955024 LTS-011 chr19 50827365 50831887 4523 * KCNC3 NA 0 NA 1.884 1 NA NA NA NA NA LTS-011 chr19 50831888 50885944 54057 * c(NAPSB, KCNC3, NR1H2, NAPSA) 0 1 NA 1.20997741010351 118 0.444747429328758 4 4 0 -5.76444653958171 LTS-011 chr19 50885945 50902163 16219 * c(POLD1, NR1H2) NA 0 NA 0.706 1 NA NA NA NA NA LTS-011 chr19 50902164 52780833 1878670 * c(SIGLEC14, SNAR-F, LOC100129083, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, VSIG10L, C19orf84, SPACA6, ZNF836, ETFB, FPR1, FPR2, FPR3, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, GPR32, HAS1, C19orf81, KLK3, KLK1, KLK2, LIM2, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, PPP2R1A, ASPDH, KLK15, KLK7, KLK6, KLK10, ZNF350, NA NA NA NA NA NA NA NA NA LTS-011 KLKP1, CLEC11A, ZNF649, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, ZNF175, ZNF613, ZNF614, SYT3, ZNF577, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, KLK4, ZNF432) 0.231846442372339 78 0.105337986541377 0.725245868301806 3272 0.382293516917889 2 2 0 -6.84296451345095 LTS-011 NA NA NA NA LTS-011 chr19 52780834 53517424 736591 * c(ZNF816-ZNF321P, ZNF816, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF610, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, MIR643, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF766, ZNF468) 0.254736202681087 21 0.0526605029545728 0.582252834188506 837 0.264260220411561 2 2 0 -7.3857844211425 LTS-011 chr19 53517425 53553608 36184 * c(ERVV-2, ERVV-1) 0.255 1 NA 0.271010113888929 50 0.161513252125777 0 0 0 -5.88569289954933 LTS-011 chr19 53553609 53553759 151 * ERVV-2 NA 0 NA 0.411 1 NA NA NA NA NA LTS-011 chr19 53553760 54610553 1056794 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, OSCAR, ZNF813, TPM3P9, ZNF525, LOC284379, VSTM1, TFPT, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, TARM1, MIR372, MIR373, NDUFA3, DPRX, ZNF331, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, NA NA NA NA NA NA NA NA NA LTS-011 MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, NLRP12, MYADM, ZNF845) 0.210841255410996 51 0.0943241968831278 0.595003808370142 1842 0.420886551698736 2 2 0 -7.14434693572366 LTS-011 NA NA NA NA LTS-011 chr19 54610554 54610667 114 * TFPT NA 0 NA 0.919 1 NA NA NA NA NA LTS-011 chr19 54610668 54722900 112233 * c(LILRB3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.278219184771975 9 0.044210984054996 0.999245015964727 545 0.406054137516713 5 4 1 -6.7939863057278 LTS-011 chr19 54722901 54722911 11 * c(LILRB3, LILRA6) 0.231 1 NA 0.476 1 NA NA NA NA NA LTS-011 chr19 54722912 54800203 77292 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA6) 0.288912609822844 10 0.0659822366668148 0.559078874941684 270 0.330279788267151 1 1 0 -6.92347385576508 LTS-011 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.163045032797402 39 0.0748612571846109 0 NA NA -7.01866045194752 LTS-011 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.619 1 NA NA NA NA NA LTS-011 chr19 54818558 54947685 129128 * c(LILRA4, LILRA5, LAIR1, TTYH1) 0.261362557922159 9 0.185346147638532 0.583055024446959 264 0.396771157644045 2 2 0 -6.79139038673837 LTS-011 chr19 54947686 54947778 93 * TTYH1 NA 0 NA 1.083 1 NA NA NA NA NA LTS-011 chr19 54947779 54976702 28924 * c(LENG8, CDC42EP5, TTYH1, LENG9) 0.190442662163608 2 0.0332340187157678 0.841997211326704 197 0.381693187822585 3 3 0 -6.75446941641727 LTS-011 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.277 1 NA NA NA NA NA LTS-011 chr19 55009101 55536646 527546 * c(RNU6-64P, LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, NLRP7, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR2, GP6, NLRP2, LILRP2, KIR3DX1, NCR1) 0.244106597394342 45 0.135260549169431 0.486621067692332 988 0.422820830556964 1 1 0 -7.03125079708768 LTS-011 chr19 55536647 56228321 691675 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.223373369772829 43 0.120564508311741 0.865776702321421 2083 0.606164885832862 2 2 0 -6.75780835453982 LTS-011 chr19 56228322 56235326 7005 * NLRP9 NA 0 NA 0.535 1 NA NA NA NA NA LTS-011 chr19 56235327 56270508 35182 * c(NLRP9, RFPL4A) 0 1 NA 0.451758384166817 62 0.601103695791002 0 0 0 -5.76532791902967 LTS-011 chr19 56270509 56273088 2580 * RFPL4A NA 0 NA 0.233 1 NA NA NA NA NA LTS-011 chr19 56273089 56284535 11447 * c(RFPL4A, RFPL4AL1) 0.399758727780001 2 0.00424264068711929 0.260642959691086 60 0.203305464423381 0 0 0 -7.02481104692772 LTS-011 chr19 56284536 56573220 288685 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11, RFPL4AL1) 0.197067173396888 13 0.153451403816757 0.452955469114667 474 0.36065872973416 2 2 0 -7.21725096556758 LTS-011 chr19 56573221 57089965 516745 * c(ZNF667-AS1, ZNF787, ZFP28, ZNF542P, ZNF582, ZNF583, ZSCAN5B, ZNF582-AS1, ZNF470, ZNF444, ZNF471, ZNF667, ZSCAN5A, GALP) 0.21858621955486 15 0.113249324606417 0.71014518630899 620 0.740748220443673 2 2 0 -6.77742801199589 LTS-011 chr19 57089966 57132672 42707 * c(ZNF470, ZNF71) NA 0 NA 0.588 1 NA NA NA NA NA LTS-011 chr19 57132673 57670749 538077 * c(MIMT1, PEG3-AS1, ZIM3, SMIM17, ZIM2, DUXA, PEG3, USP29, ZNF71, ZNF835) 0.182541588134434 13 0.125584071340115 0.507432116814484 526 0.393519689294901 2 2 0 -7.31220394155275 LTS-011 chr19 57670750 57672109 1360 * DUXA NA 0 NA 0.657 1 NA NA NA NA NA LTS-011 chr19 57672110 58790675 1118566 * c(LOC100128398, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, ZNF543, C19orf18, ZNF418, ZNF417, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZNF549, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZNF530, ZNF773, ZNF749, ZNF805, ZNF772, DUXA, ZNF586, ZNF416, VN1R1, ZNF304, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551, ZNF264) 0.256621309172273 47 0.0891324098966647 0.752941964231809 2464 0.344523610307513 2 2 0 -6.77561977576232 LTS-011 chr19 58790676 58992124 201449 * c(A1BG, MIR4754, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZNF8, ZNF132) NA 0 NA 0.744253751400344 513 0.286394999112361 2 NA NA -5.77599882065738 LTS-011 chr19 58992125 59009868 17744 * c(SLC27A5, ZNF446) NA 0 NA 1.167 1 NA NA NA NA NA LTS-011 chr19 59009869 59084001 74133 * c(MZF1-AS1, TRIM28, SLC27A5, CHMP2A, MZF1, ZBTB45, UBE2M) NA 0 NA 0.996504695176221 277 0.343850241254865 3 NA NA -5.76462734927873 LTS-011 chr20 68260 241654 173395 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) NA 0 NA 0.409523708301288 131 0.183209078411016 0 NA NA -5.76670188386619 LTS-011 chr20 241655 251485 9831 * DEFB132 NA 0 NA 1.37 1 NA NA NA NA NA LTS-011 chr20 251486 333975 82490 * c(C20orf96, SOX12, NRSN2, ZCCHC3) NA 0 NA 1.11365808763311 235 0.488129346058358 3 NA NA -5.76598636918407 LTS-011 chr20 333976 335225 1250 * NRSN2 0.427 1 NA 0.64940083908498 33 0.603168185374929 1 1 0 -5.76442001951285 LTS-011 chr20 335226 1559302 1224077 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, TCF15, NRSN2, FAM110A, SCRT2, PSMF1, SNPH) 0.441990983486583 38 0.0909560919815891 0.789971822925008 1565 0.393942131328145 2 1 1 -6.84887945491232 LTS-011 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.109 1 NA NA NA NA NA LTS-011 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.111071850500443 39 0.0284625141168441 0 NA NA -12.781677131306 LTS-011 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 0.996 1 NA NA NA NA NA LTS-011 chr20 1600391 3764653 2164263 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, CENPB, HSPA12B, TMC2, C20orf141, SIRPA, STK35, UBOX5, SPEF1, C20orf194, GNRH2, IDH3B, TGM6, ITPA, OXT, PDYN, C20orf27, AVP, SIRPG, CPXM1, EBF4, PTPRA, FASTKD5, GFRA4, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, ADAM33, SLC4A11, ATRN, LZTS3) 0.409675047086235 88 0.12801357523363 0.797279294471466 3014 0.357260773394653 2 1 1 -6.73903485495231 LTS-011 chr20 3764654 3764658 5 * CENPB NA 0 NA 1.182 1 NA NA NA NA NA LTS-011 chr20 3764659 3803004 38346 * c(CENPB, AP5S1, CDC25B) NA 0 NA 1.3255845665406 165 0.617660722161774 4 NA NA -5.76476167036673 LTS-011 chr20 3803005 3804515 1511 * AP5S1 NA 0 NA 0.891 1 NA NA NA NA NA LTS-011 chr20 3804516 10594162 6789647 * c(SNAP25-AS1, MIR103B2, PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, SLX4IP, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, LAMP5, TMEM230, MIR103A2, PCNA, TRMT6, PLCB4, HAO1, SMOX, CRLS1, AP5S1, FERMT1, PRNP, TMX4, GPCPD1, PAK5, MAVS, ANKEF1, LOC643406, BMP2, SNAP25, LINC01433, PANK2, MKKS, MCM8, CDS2, RASSF2, SLC23A2) 0.414117391639409 78 0.126059218518229 0.807295656142654 3300 0.411046992646109 2 1 1 -6.73959036323758 LTS-011 chr20 10594163 10601944 7782 * SLX4IP NA 0 NA 1.213 1 NA NA NA NA NA LTS-011 chr20 10601945 10654540 52596 * c(SLX4IP, JAG1) 0.443394579795298 4 0.0401860257635246 1.29353254354158 233 0.738809063908947 4 2 2 -7.30155626740905 LTS-011 chr20 10654541 11008402 353862 * JAG1 NA 0 NA 0.398 1 NA NA NA NA NA LTS-011 chr20 11008403 20033436 9025034 * c(C20orf78, LOC100130264, LOC100270804, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, MACROD2, BANF2, SCP2D1, ISM1, BTBD3, FLRT3, CFAP61, SNX5, LINC00652, LOC339593, LINC00493, LINC00851, NAA20, PCSK2, CRNKL1, ESF1, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, OTOR, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, SNRPB2, SNORD17, ZNF133, NDUFAF5, SEL1L2, MGME1, DTD1) 0.416852072752158 74 0.113344945358327 0.843876851433873 3070 0.413156476051384 2 1 1 -6.78562117105217 LTS-011 chr20 20033437 20036573 3137 * c(CFAP61, CRNKL1) NA 0 NA 0.547 1 NA NA NA NA NA LTS-011 chr20 20036574 20377502 340929 * c(CFAP61, INSM1, CRNKL1, RALGAPA2) 0.457146112788229 8 0.035704141416448 0.624118433734959 341 0.326730947004114 2 1 1 -8.02230870963592 LTS-011 chr20 20377503 20392571 15069 * RALGAPA2 NA 0 NA 1.503 1 NA NA NA NA NA LTS-011 chr20 20392572 21126194 733623 * c(KIZ, RALGAPA2) 0.406578974663848 3 0.0725901738070197 1.27352870396237 281 0.574022258965185 4 2 2 -6.73682002245138 LTS-011 chr20 21126195 21142523 16329 * KIZ 0.263 1 NA 1.207214054996 5 0.229481589675512 4 4 0 -5.7644650855079 LTS-011 chr20 21142524 21686366 543843 * c(XRN2, NKX2-2, PAX1, KIZ, NKX2-4) 0.348484184730084 4 0.0878801266878164 1.23036314197826 298 0.628210221746079 4 3 1 -6.76403001071628 LTS-011 chr20 21686367 23017406 1331040 * c(LINC01432, LINC00261, LOC284788, FOXA2, PAX1, SSTR4) 0.420089393693733 4 0.0281587760150662 0.699582391945241 161 0.380467404803634 2 1 1 -7.08475870359262 LTS-011 chr20 23017407 23026243 8837 * character(0) NA 0 NA 1.211 1 NA NA NA NA NA LTS-011 chr20 23026244 23402086 375843 * c(LINC00656, CD93, NXT1, NAPB, GZF1, THBD) 0.366359294696405 12 0.0494221150351283 1.24736374789028 493 0.496880283696311 6 4 2 -6.80272437866215 LTS-011 chr20 23402087 23402095 9 * NAPB NA 0 NA 0.473 1 NA NA NA NA NA LTS-011 chr20 23402096 26188981 2786886 * c(LOC100134868, CST8, CSTL1, CST9L, CST9, NANP, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, NINL, ABHD12, ZNF337, LOC284798, FAM182A, MIR663AHG, VSX1, FLJ33581, APMAP, PYGB, NAPB, MIR663A, FAM182B, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.359877405020803 77 0.117276055843017 0.995449947446223 1545 0.507333108864483 3 2 1 -6.75626646331012 LTS-011 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.888530534084016 5 0.096037492678641 2 NA NA -5.76442946171063 LTS-011 chr20 29625845 29625876 32 * FRG1BP 0.306 1 NA 1.131 1 NA NA NA NA NA LTS-011 chr20 29625877 30070136 444260 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1) 0.355238399172075 18 0.0711773307893788 0.694110287156667 199 0.405065952364784 1 1 0 -6.85976666753334 LTS-011 chr20 30070137 30310391 240255 * c(MCTS2P, MIR3193, HM13-AS1, LINC00028, REM1, ID1, BCL2L1, HM13, COX4I2) NA 0 NA 1.47150887521731 225 0.853124609471391 5 NA NA -5.76453140944115 LTS-011 chr20 30310392 30345187 34796 * c(TPX2, BCL2L1) NA 0 NA 0.463 1 NA NA NA NA NA LTS-011 chr20 30345188 32236595 1891408 * c(DUSP15, TSPY26P, BPIFB6, BPIFA3, BPIFA2, NOL4L, CCM2L, SUN5, LOC149950, COMMD7, BPIFB4, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, C20orf203, HCK, BPIFA4P, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, SNTA1, BPIFB2, PDRG1, MYLK2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.353234573227046 47 0.138936262082183 0.947636323725578 3026 0.503642331089862 3 2 1 -6.78126792735376 LTS-011 chr20 32236596 33176468 939873 * c(MIR4755, PXMP4, C20orf144, CHMP4B, PIGU, ACTL10, E2F1, AHCY, RALY, ASIP, NECAB3, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.274906172164646 8 0.195742131752102 1.19969295564355 961 0.519026836213303 4 3 1 -6.77875499236574 LTS-011 chr20 33176469 33203752 27284 * PIGU NA 0 NA 0.88 1 NA NA NA NA NA LTS-011 chr20 33203753 35221158 2017406 * c(TGIF2-C20orf24, MIR499B, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, CEP250, PIGU, HMGB3P1, FAM83C, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, NCOA6, AAR2, TRPC4AP, GGT7, GSS, EIF6, PHF20, SCAND1, ERGIC3, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, TGIF2, NORAD, SPAG4, GDF5, CPNE1, NFS1, RBM39) 0.339913935280882 63 0.12726729011667 0.99128808946837 3417 0.455950835042057 3 2 1 -6.7994978653804 LTS-011 chr20 35221159 35241688 20530 * c(TGIF2-C20orf24, C20orf24, TGIF2, SLA2) 0 1 NA 1.12852574379571 67 0.607701370474154 4 4 0 -5.76464878317968 LTS-011 chr20 35241689 35263063 21375 * SLA2 NA 0 NA 0.917490669011981 41 0.276675249891346 3 NA NA -5.76631474366736 LTS-011 chr20 35263064 35269651 6588 * SLA2 NA 0 NA 0.238 1 NA NA NA NA NA LTS-011 chr20 35269652 36662022 1392371 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, SAMHD1, GHRH, NNAT, CTNNBL1, NDRG3, RPRD1B, RBL1, RPN2, MANBAL, SRC, DSN1, SLA2, TTI1) 0.252457055654425 25 0.0896690582085036 0.743504969841907 1597 0.35457240155171 2 2 0 -6.78958864931263 LTS-011 chr20 36662023 36662041 19 * RPRD1B NA 0 NA 1.556 1 NA NA NA NA NA LTS-011 chr20 36662042 36917503 255462 * c(RPRD1B, TGM2, KIAA1755) 0.238199856378481 15 0.0806407081412596 0.998724056304203 409 0.451730953121282 2 2 0 -6.76961778889469 LTS-011 chr20 36917504 36917602 99 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-011 chr20 36917603 37668371 750769 * c(SNHG11, SLC32A1, ADIG, PPP1R16B, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, DHX35, BPI, SNORA71E, SNORA71C, SNORA71D, ACTR5, FAM83D) 0.251016613839017 17 0.089861044690907 0.725196120221344 1092 0.324911565658 2 2 0 -6.7908111735967 LTS-011 chr20 39314453 39745125 430673 * c(TOP1, MAFB) 0.259479598374512 3 0.0270246800782791 1.09533578415733 201 0.465184791452821 2 2 0 -6.99065305037825 LTS-011 chr20 39745126 39746895 1770 * TOP1 NA 0 NA 0.597 1 NA NA NA NA NA LTS-011 chr20 39746896 41514566 1767671 * c(PTPRT, ZHX3, PLCG1, LPIN3, TOP1, CHD6, EMILIN3) 0.223972621027539 14 0.146221888441302 0.680125119638938 1328 0.301736419164932 2 2 0 -7.09747717206542 LTS-011 chr20 41514567 42694688 1180122 * c(SGK2, PTPRT, GTSF1L, L3MBTL1, MYBL2, IFT52, SRSF6, TOX2) 0.238626075965457 7 0.207885957747442 0.881835204786787 603 0.370776617453335 2 2 0 -6.76719652199211 LTS-011 chr20 42694689 42815190 120502 * c(JPH2, TOX2) 0.477 1 NA 0.948135000028173 99 0.364851356115568 3 3 0 -5.76736575283512 LTS-011 chr20 42815191 43804825 989635 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, TOMM34, SERINC3, PKIG, FITM2, WFDC12, RIMS4, R3HDML, WFDC5, HNF4A, KCNS1, OSER1, PI3, JPH2, KCNK15, STK4, YWHAB, GDAP1L1, LINC01260, TTPAL, PABPC1L, WISP2) 0.351035332351953 46 0.144527591267831 0.892941990437245 1529 0.415789982292473 3 2 1 -6.81930856116368 LTS-011 chr20 43804826 43835590 30765 * PI3 NA 0 NA 0.376 1 NA NA NA NA NA LTS-011 chr20 43835591 43852139 16549 * c(SEMG1, SEMG2) 0.452 1 NA 0.532601620973229 80 0.1434784330814 1 1 0 -5.77242584951314 LTS-011 chr20 43852140 43880810 28671 * SEMG2 NA 0 NA 1.585 1 NA NA NA NA NA LTS-011 chr20 43880811 44099877 219067 * c(WFDC2, RBPJL, TP53TG5, PIGT, DBNDD2, SDC4, SLPI, SYS1-DBNDD2, MATN4, SYS1) 0.371039526140041 5 0.05655705084249 1.13963074129008 462 0.528108693029905 3 2 1 -6.75679097248636 LTS-011 chr20 44099878 44108037 8160 * WFDC2 NA 0 NA 0.769 1 NA NA NA NA NA LTS-011 chr20 44108038 44378681 270644 * c(EPPIN-WFDC6, WFDC2, SPINT3, WFDC10A, WFDC6, WFDC13, WFDC11, WFDC9, WFDC10B, SPINT4, EPPIN, WFDC8) 0.394490835560306 12 0.0548079290879439 0.685056867907192 309 0.395935075559537 2 1 1 -6.77571971968603 LTS-011 chr20 44378682 44402762 24081 * character(0) NA 0 NA 0.91 1 NA NA NA NA NA LTS-011 chr20 44402763 48700862 4298100 * c(ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3616, TRERNA1, ARFGEF2, UBE2C, TP53RK, DNTTIP1, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, CSE1L, EYA2, SLC9A8, ZMYND8, SNORD12C, LINC00494, KCNB1, TMEM189-UBE2V1, MMP9, ZFAS1, SLC35C2, PLTP, CTSA, DDX27, ZNF334, RNF114, SULF2, ZNFX1, PTGIS, SLC12A5, PREX1, NCOA5, ELMO2, ZNF335, PCIF1, CDH22, SLC13A3, SNAI1, STAU1, SNORD12, TNNC2, UBE2V1, MKRN7P, SLC2A10, NCOA3, NA NA NA NA NA NA NA NA NA LTS-011 SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.369505923589728 66 0.132957192928834 0.995191169067183 4613 0.436576860423383 3 2 1 -6.7460853809599 LTS-011 NA NA NA NA LTS-011 chr20 48700863 48700947 85 * c(TMEM189-UBE2V1, UBE2V1) 0.324 1 NA 1.473 1 NA NA NA NA NA LTS-011 chr20 48700948 52188386 3487439 * c(MIR3194, ATP9A, CEBPB, TSHZ2, FAM65C, ADNP, MOCS3, LINC01270, KCNG1, TMEM189, TMEM189-UBE2V1, NFATC2, BCAS4, ZFP64, SALL4, PTPN1, MIR645, UBE2V1, ZNF217, PARD6B, DPM1) 0.416190945671485 23 0.0535399817357905 1.31304459673603 1698 0.78116975283727 4 2 2 -6.78812104211397 LTS-011 chr20 52188387 52192260 3874 * ZNF217 NA 0 NA 2.714 1 NA NA NA NA NA LTS-011 chr20 52192261 52561344 369084 * c(SUMO1P1, ZNF217, BCAS1) 0.389497498417438 10 0.0369926419110011 2.51833568099102 207 0.74905393292341 10 6 4 -6.73338765914093 LTS-011 chr20 52561345 52561452 108 * BCAS1 NA 0 NA 1.627 1 NA NA NA NA NA LTS-011 chr20 52561453 53092349 530897 * c(MIR4756, CYP24A1, PFDN4, DOK5, BCAS1) 0.308638033442941 4 0.0225 1.63396485566522 197 0.771043179489256 11 8 3 -6.87223072398025 LTS-011 chr20 53092350 53092425 76 * DOK5 NA 0 NA 0.642 1 NA NA NA NA NA LTS-011 chr20 53092426 53259964 167539 * DOK5 0.329 1 NA 0.788486129166157 35 0.21249993376173 2 2 0 -5.76655320316149 LTS-011 chr20 53259965 53267582 7618 * DOK5 0.195 1 NA 0.918568327512138 17 0.51558331471428 3 3 0 -5.76460136492621 LTS-011 chr20 53267583 55093972 1826390 * c(FAM210B, GCNT7, CBLN4, CSTF1, MC3R, RTFDC1, DOK5, CASS4, AURKA) 0.212825804509469 14 0.115009985233008 0.729754327092123 481 0.466965466559851 2 2 0 -6.83996309061262 LTS-011 chr20 55093973 55099505 5533 * GCNT7 NA 0 NA 0.428 1 NA NA NA NA NA LTS-011 chr20 55099506 55111601 12096 * c(GCNT7, FAM209A, FAM209B) 0.291 1 NA 0.359845988585924 40 0.139136049910206 0 0 0 -5.76831702163127 LTS-011 chr20 55111602 55204306 92705 * character(0) NA 0 NA 1.126 1 NA NA NA NA NA LTS-011 chr20 55204307 57289755 2085449 * c(MIR4325, MTRNR2L3, MIR4532, MIR5095, C20orf85, CTCFL, APCDD1L-AS1, APCDD1L, SPO11, PCK1, PPP4R1L, RBM38, PMEPA1, RAB22A, BMP7, TFAP2C, NPEPL1, ZBP1, RAE1, STX16, VAPB) 0.263078609386903 52 0.0695907531651549 0.810578467104628 1706 0.406059241406307 2 2 0 -6.77061351264531 LTS-011 chr20 57289756 57290260 505 * NPEPL1 NA 0 NA 0.364 1 NA NA NA NA NA LTS-011 chr20 57290261 57432253 141993 * c(MIR298, GNAS-AS1, GNAS, MIR296, NPEPL1) 0.266566660444103 5 0.0911608468587255 0.587780999321168 170 0.286912510632416 2 2 0 -6.87175725767684 LTS-011 chr20 57432254 57465123 32870 * GNAS NA 0 NA 1.963 1 NA NA NA NA NA LTS-011 chr20 57465124 57617931 152808 * c(SLMO2-ATP5E, CTSZ, GNAS, PRELID3B, ATP5E, NELFCD, TUBB1) 0.28737983290389 8 0.0455801883654354 0.999680317328538 412 0.563908554083865 5 4 1 -6.77542181560615 LTS-011 chr20 57617932 58439507 821576 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3) 0.293602897959261 7 0.0973821632245131 0.516928988899121 386 0.27224414642764 1 1 0 -6.96367140997619 LTS-011 chr20 58439508 58440384 877 * SYCP2 NA 0 NA 0.809 1 NA NA NA NA NA LTS-011 chr20 58440385 58589211 148827 * c(SYCP2, PPP1R3D, CDH26, FAM217B) 0.21289862168739 4 0.166187394227119 0.817073753205491 480 0.338123730913588 2 2 0 -6.75622720527296 LTS-011 chr20 58589212 60504885 1915674 * c(CDH4, MIR4533, C20orf197, MIR646HG, CDH26) 0.137712057897477 5 0.148171522230151 0.505646019460124 247 0.263109363656393 1 1 0 -8.07534437365124 LTS-011 chr20 60504886 61869579 1364694 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, CDH4, MIR1257, MIR4758, LINC00659, OGFR-AS1, TCFL5, ADRM1, OGFR, DIDO1, HRH3, BHLHE23, MIR1-1HG, COL9A3, GATA5, RBBP8NL, LSM14B, C20orf166-AS1, SS18L1, MTG2, SLCO4A1, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, MRGBP, PSMA7, RPS21, SLC17A9, LOC63930, TAF4, HAR1A, HAR1B, BIRC7, CABLES2, OSBPL2) 0.255649156494452 98 0.0637977487505189 0.782772142952472 2660 0.372620962923867 2 2 0 -6.75644013228632 LTS-011 chr20 61869580 62199097 329518 * c(FLJ16779, MIR4326, MIR3196, CHRNA4, NKAIN4, EEF1A2, KCNQ2, ARFGAP1, PTK6, COL20A1, SRMS, FNDC11, PPDPF, BIRC7, HELZ2) 0.245530760162419 37 0.0734334697156172 0.615922075551686 1037 0.321831409785447 2 2 0 -6.87706950856 LTS-011 chr20 62199098 62199126 29 * HELZ2 0.294 1 NA 1.276 1 NA NA NA NA NA LTS-011 chr20 62199127 62701092 501966 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, SAMD10, ABHD16B, PRPF6, GMEB2, LINC00176, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.233779531118724 42 0.0928705216842751 0.887902332509503 1560 0.386734472382106 2 2 0 -6.75823202438493 LTS-011 chr20 62701093 62701169 77 * TCEA2 NA 0 NA 0.73 1 NA NA NA NA NA LTS-011 chr20 62701170 62896708 195539 * c(RGS19, LKAAEAR1, NPBWR2, MYT1, OPRL1, PCMTD2, TCEA2) 0.194489610481413 12 0.127908703236474 0.69553604698275 366 0.384651265437532 2 2 0 -6.84678203318871 LTS-011 chr20 62896709 62959313 62605 * c(LINC00266-1, PCMTD2) NA 0 NA 0.75355761667985 87 0.319691716979613 2 NA NA -5.76655137337721 LTS-011 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.303 1 NA 0.360875729045718 22 0.457154297746452 0 0 0 -5.76671301246439 LTS-011 chr21 9907203 11059877 1152675 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.352157488101615 34 0.0877354433589434 0.597834534639151 172 0.564897075283945 1 1 0 -6.78469017237313 LTS-011 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.05815484029426 5 0.651873607381063 3 NA NA -5.76448129376235 LTS-011 chr21 14745307 14756794 11488 * character(0) 0.273 1 NA 0.639009966235858 9 0.598368290529429 1 1 0 -5.76446449919114 LTS-011 chr21 14756795 16340539 1583745 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.22216276489433 18 0.0951049815537539 0.83723057319571 601 0.470311166115395 2 2 0 -6.77293124782558 LTS-011 chr21 16340540 16340621 82 * NRIP1 NA 0 NA 1.225 1 NA NA NA NA NA LTS-011 chr21 16340622 19169417 2828796 * c(LINC01549, BTG3, CXADR, C21orf91-OT1, USP25, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, C21orf91, NRIP1) 0.200334812723854 16 0.0821983120264644 1.31863487652784 557 0.752799104000922 4 4 0 -6.86888509803071 LTS-011 chr21 19169418 19190525 21108 * C21orf91 NA 0 NA 0.811 1 NA NA NA NA NA LTS-011 chr21 19190526 30959761 11769236 * c(MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, LINC00189, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, GRIK1, N6AMT1, LOC339622, APP, LINC00317, LINC00320, MIR155, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, ADAMTS1) 0.2119734019291 60 0.0816943870859922 1.031160237422 2244 0.549265771720801 3 3 0 -6.75815361589776 LTS-011 chr21 30959762 32491064 1531303 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, GRIK1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.22359747315828 18 0.0555583953522566 0.606042210923752 647 0.367070208707667 2 2 0 -7.36469269995799 LTS-011 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 0.859 1 NA NA NA NA NA LTS-011 chr21 32491171 34144147 1652977 * c(PAXBP1-AS1, LINC00159, TCP10L, HUNK, MIS18A, MRAP, C21orf59, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, URB1-AS1, SYNJ1, PAXBP1, URB1) 0.188358887805627 16 0.101233043847682 1.08279364505626 1421 0.628148503812813 3 3 0 -6.74523239586581 LTS-011 chr21 34144148 34157042 12895 * c(C21orf62-AS1, PAXBP1) NA 0 NA 0.601 1 NA NA NA NA NA LTS-011 chr21 34157043 34542562 385520 * c(OLIG2, OLIG1, C21orf62-AS1, C21orf62, LINC01548) 0.216121425396201 4 0.0133041346956501 0.749577261826275 273 0.311673600514895 3 3 0 -8.07738168040499 LTS-011 chr21 34542563 34602673 60111 * IFNAR2 NA 0 NA 1.233 1 NA NA NA NA NA LTS-011 chr21 34602674 38996927 4394254 * c(LOC100133286, IL10RB-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCR3, LINC00310, RCAN1, DYRK1A, MORC3, CLDN14, DSCR9, GART, DONSON, HLCS, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, PIGP, RIPPLY3, ATP5O, LINC00160, SMIM11A, SETD4, CLIC6, DNAJC28, ITSN1, SIM2, MRPS6, SLC5A3, SON, TTC3, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, RUNX1, CBR1, CBR3, CRYZL1, DOPEY2, KCNE2) 0.203508940893824 92 0.0936639517510373 1.02008632906415 4296 0.949016965174939 3 3 0 -6.73683412349424 LTS-011 chr21 38996928 39947722 950795 * c(DSCR4, ERG, DSCR10, KCNJ6, KCNJ15, DSCR8) 0.273595775597298 4 0.0773191438131592 0.783650443711248 319 0.333129411086244 2 2 0 -6.81762750200353 LTS-011 chr21 39947723 40177207 229485 * c(ERG, LINC00114) NA 0 NA 2.811 1 NA NA NA NA NA LTS-011 chr21 40177208 40558862 381655 * c(ETS2, BRWD1, PSMG1) 0.167 1 NA 1.47377630761912 237 0.615381541810446 5 5 0 -5.76482788332544 LTS-011 chr21 40558863 40670557 111695 * BRWD1 0 1 NA 1.00559359855992 393 0.440655349306355 3 3 0 -5.76448727089619 LTS-011 chr21 40670558 40684984 14427 * BRWD1 NA 0 NA 2.904 1 NA NA NA NA NA LTS-011 chr21 40684985 40762848 77864 * c(BRWD1-AS1, NA, HMGN1, BRWD1, WRB) NA 0 NA 1.70032791525726 83 0.69278098451575 6 NA NA -5.76452486016337 LTS-011 chr21 40762849 40763626 778 * WRB NA 0 NA 0.957 1 NA NA NA NA NA LTS-011 chr21 40763627 42219090 1455464 * c(DSCAM-AS1, MIR4760, DSCAM-IT1, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, PCP4, SH3BGR, WRB) 0.190488914622699 11 0.0827261638287319 0.812247744784608 618 0.431879874188954 3 3 0 -6.97070080689817 LTS-011 chr21 42219091 42539431 320341 * LINC00323 NA 0 NA 1.793 1 NA NA NA NA NA LTS-011 chr21 42539432 45789164 3249733 * c(MIR3197, WDR4, HSF2BP, LINC00313, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, PLAC4, RRP1B, ICOSLG, BACE2, C2CD2, LINC00319, AATBC, DNMT3L, AIRE, MX1, MX2, NDUFV3, ZBTB21, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, U2AF1, C21orf2, C21orf33, PDXK, RRP1, CBS, RSPH1, UMODL1, ABCG1) 0.177792652352242 119 0.0719139456699878 1.07177951097541 4461 0.704623171078134 3 3 0 -6.78078760665707 LTS-011 chr21 45789165 46190960 401796 * c(LRRC3-AS1, TSPEAR-AS2, KRTAP12-2, KRTAP12-1, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, TSPEAR, TRPM2, UBE2G2, LRRC3) 0.19400220470312 26 0.0790437561393396 0.742546051563029 731 0.45970506407921 3 3 0 -6.84676713496844 LTS-011 chr21 46190961 48080896 1889936 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, ITGB2, PICSAR, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.225294037649813 63 0.0792525793029153 0.958770412451706 2851 0.462054343730286 3 3 0 -6.83439906843803 LTS-011 chr21 48080897 48084993 4097 * PRMT2 NA 0 NA 0.826332433517031 29 0.259979176884983 2 NA NA -5.76441926867752 LTS-011 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.32 1 NA 0.723577232724731 5 0.212646890407549 2 2 0 -5.89404809511386 LTS-011 chr22 16887896 17073742 185847 * CCT8L2 NA 0 NA 0.395804766846675 123 0.16775220081909 0 NA NA -5.76459751266082 LTS-011 chr22 17073743 17156066 82324 * c(ANKRD62P1-PARP4P3, TPTEP1) NA 0 NA 0.581 1 NA NA NA NA NA LTS-011 chr22 17156067 17594915 438849 * c(CECR7, GAB4, XKR3, IL17RA, ANKRD62P1-PARP4P3, HSFY1P1, TPTEP1) 0.119764983587753 9 0.125366462820006 0.691177466147105 357 0.549834031103919 3 3 0 -7.07690518442007 LTS-011 chr22 17594916 17595175 260 * IL17RA 0.314 1 NA 0.644065396993078 7 0.0869482604771366 1 1 0 -5.76448668017586 LTS-011 chr22 17595176 17690740 95565 * c(CECR5-AS1, IL17RA, CECR6, CECR5, CECR1) 0.266947394609841 16 0.0541817543089922 0.706180483114479 326 0.334481402230292 2 2 0 -6.83473354690226 LTS-011 chr22 17690741 19048505 1357765 * c(FLJ41941, MIR3198-1, USP18, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, CECR3, CECR2, TUBA8, CECR1, ATP6V1E1, PEX26, PRODH, MICAL3, BID, MIR648, DGCR6, SLC25A18, DGCR2) 0.31149253353028 39 0.0889019232458731 1.38828798812985 1340 0.736675830032715 4 3 1 -6.77726826577784 LTS-011 chr22 19048506 19050659 2154 * DGCR2 NA 0 NA 0.352 1 NA NA NA NA NA LTS-011 chr22 19050660 19702147 651488 * c(SEPT5-GP1BB, C22orf39, LINC00895, TSSK2, GSC2, MRPL40, SLC25A1, CLDN5, HIRA, UFD1L, CLTCL1, DGCR14, CDC45, DGCR2) 0.286965498570283 41 0.115899914770902 0.576905843260776 961 0.346721372740096 1 1 0 -6.80953117661793 LTS-011 chr22 19702148 19747151 45004 * c(SEPT5-GP1BB, TBX1) NA 0 NA 0.525386246634097 110 0.145094539368172 1 NA NA -5.79039431141913 LTS-011 chr22 19747152 19751829 4678 * TBX1 0.143 1 NA 1.14181612228223 19 0.33317597162787 4 4 0 -5.76454441174244 LTS-011 chr22 19751830 19776206 24377 * c(GNB1L, TBX1) 0.138054727167054 9 0.0256000217013797 1.01168793885885 176 0.320949575225864 5 5 0 -6.75261919763347 LTS-011 chr22 19776207 20292866 516660 * c(MIR1286, MIR1306, MIR3618, MIR4761, TXNRD2, TANGO2, COMT, LINC00896, TRMT2A, LOC284865, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, RANBP1, RTN4R, C22orf29) 0.119748408980184 47 0.0346767549779414 1.55132737593489 1147 0.762826973667556 6 6 0 -6.73749792074077 LTS-011 chr22 20292867 20292896 30 * character(0) NA 0 NA 1.076 1 NA NA NA NA NA LTS-011 chr22 20292897 20385740 92844 * c(TMEM191B, PI4KAP1, NA, DGCR6L) 0.142769182511325 2 0.108187337521542 1.00918687712438 79 0.565141073230159 5 5 0 -6.75511867995082 LTS-011 chr22 20385741 20721039 335299 * c(PI4KAP1, RIMBP3) NA 0 NA 0.447272310543577 39 0.317682447818292 0 NA NA -5.79082610517348 LTS-011 chr22 20721040 20721803 764 * character(0) NA 0 NA 1.447 1 NA NA NA NA NA LTS-011 chr22 20721804 21988599 1266796 * c(TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, POM121L4P, POM121L8P, SERPIND1, PI4KAP2, LRRC74B, BCRP2, THAP7-AS1, P2RX6P, MED15, PI4KA, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29) 0.148068245962695 35 0.0942883829517924 1.38153964276513 1797 0.733306125245978 5 5 0 -6.73991552544726 LTS-011 chr22 21988600 22065287 76688 * c(MIR301B, CCDC116, SDF2L1, PPIL2, YPEL1, MIR130B) NA 0 NA 1.31589077451267 297 0.498540590115509 4 NA NA -5.76529169974952 LTS-011 chr22 22065288 22123365 58078 * c(YPEL1, MAPK1) NA 0 NA 0.537 1 NA NA NA NA NA LTS-011 chr22 22123366 22221976 98611 * MAPK1 0.452 1 NA 0.589482179829445 40 0.280180527883592 1 1 0 -5.76498139630457 LTS-011 chr22 22221977 23473933 1251957 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, RSPH14, GNAZ, LL22NC03-63E9.3, MIR650, VPREB1, TOP3B, GGTLC2, PPM1F, BMS1P20) 0.316693862280542 31 0.123938633792037 0.490135098751258 1175 0.314968877805425 1 1 0 -7.05933945077898 LTS-011 chr22 23473934 23476044 2111 * RSPH14 NA 0 NA 0.799 1 NA NA NA NA NA LTS-011 chr22 23476045 24108042 631998 * c(ZDHHC8P1, C22orf15, FBXW4P1, RGL4, RSPH14, VPREB3, IGLL1, CHCHD10, DRICH1, BCR, CES5AP1, ZNF70, GUSBP11, RAB36) 0.251966847759389 21 0.12115305157016 0.640714359319947 672 0.308677148605863 2 2 0 -6.95302852053623 LTS-011 chr22 24108043 24108051 9 * c(C22orf15, CHCHD10) NA 0 NA 0.967 1 NA NA NA NA NA LTS-011 chr22 24108052 24342396 234345 * c(DDTL, DDT, GSTTP1, MIF-AS1, CHCHD10, MIF, MMP11, SMARCB1, SLC2A11, DERL3) 0.24816711292198 8 0.100296346607726 0.889254486819502 448 0.425724514083672 2 2 0 -6.73958577704046 LTS-011 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.115 1 NA NA NA NA NA LTS-011 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0539414773709842 55 0.0473230676020979 0 NA NA -13.854451139309 LTS-011 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 1.244 1 NA NA NA NA NA LTS-011 chr22 24400149 25082723 682575 * c(ADORA2A, SPECC1L, CABIN1, GGT1, GGT5, POM121L9P, LRRC75B, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, GUCD1) 0.266520750765463 21 0.0681940857650671 0.888422307126576 939 0.418265027517356 2 2 0 -6.80702628877868 LTS-011 chr22 25082724 25088075 5352 * character(0) NA 0 NA 0.445 1 NA NA NA NA NA LTS-011 chr22 25088076 26343890 1255815 * c(LOC100128531, SGSM1, CRYBB2, CRYBB2P1, CRYBB3, GRK3, TMEM211, PIWIL3, TOP1P2, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.210378803314659 16 0.105070690489784 0.656920894445535 948 0.32654147347324 2 2 0 -7.1059937402555 LTS-011 chr22 26343891 26829347 485457 * c(SEZ6L, ASPHD2, MYO18B) 0.248619253723574 5 0.026233566284438 0.460964646010048 250 0.194418759073084 2 2 0 -8.55081767885027 LTS-011 chr22 26829348 26829349 2 * ASPHD2 NA 0 NA 1.552 1 NA NA NA NA NA LTS-011 chr22 26829350 29192028 2362679 * c(MIR548J, MIR3199-2, MIR3199-1, CHEK2, CRYBA4, CRYBB1, HSCB, CCDC117, TTC28, PITPNB, TFIP11, TTC28-AS1, SRRD, MN1, MIAT, ASPHD2, XBP1, TPST2, HPS4) 0.221827881010033 14 0.135484235326395 0.813610439780832 1280 0.417787428129555 2 2 0 -6.7514880397895 LTS-011 chr22 29192029 29280039 88011 * c(XBP1, ZNRF3) 0.235 1 NA 1.72023073521166 46 0.906106652497642 6 6 0 -5.76454603966842 LTS-011 chr22 29280040 29382990 102951 * ZNRF3 NA 0 NA 0.62 1 NA NA NA NA NA LTS-011 chr22 29382991 29449693 66703 * c(ZNRF3-AS1, ZNRF3) 0.451 1 NA 0.645352922539376 79 0.393141387957341 1 1 0 -5.76543835114669 LTS-011 chr22 29449694 29452380 2687 * ZNRF3 0 1 NA 0.833890457806296 55 0.36308669972219 2 2 0 -5.76441774717443 LTS-011 chr22 29452381 29521413 69033 * c(C22orf31, KREMEN1, ZNRF3) NA 0 NA 0.775372988113134 75 0.370494896683434 2 NA NA -5.7650995911535 LTS-011 chr22 29521414 29533309 11896 * KREMEN1 NA 0 NA 2.183 1 NA NA NA NA NA LTS-011 chr22 29533310 29656320 123011 * c(EMID1, RHBDD3, KREMEN1) 0.0503590338509933 2 0.00565685424949238 2.7204791469368 240 0.994783344709508 17 17 0 -6.76631545162059 LTS-011 chr22 29656321 29755888 99568 * c(MIR3653, RASL10A, GAS2L1, AP1B1, EWSR1, RHBDD3) 0.0554182849336738 8 0.0248074729524334 3.97386480920772 392 1.66422093946237 16 16 0 -6.73431656194062 LTS-011 chr22 29755889 29755942 54 * AP1B1 NA 0 NA 2.412 1 NA NA NA NA NA LTS-011 chr22 29755943 29887378 131436 * c(RFPL1S, AP1B1, NEFH, RFPL1) 0.052750142713005 6 0.0285867101989718 2.1425180710715 155 1.62720647831901 16 16 0 -6.74384911054496 LTS-011 chr22 29887379 29901811 14433 * character(0) NA 0 NA 4.783 1 NA NA NA NA NA LTS-011 chr22 29901812 30770094 868283 * c(SF3A1, HORMAD2, CABP7, UQCR10, LIF, NF2, OSM, CCDC157, ZMAT5, GATSL3, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3) 0.0514837621695724 41 0.025093386554638 3.56546689989995 1398 2.1080086807012 17 17 0 -6.73410798746369 LTS-011 chr22 30770095 30770311 217 * c(CCDC157, KIAA1656) NA 0 NA 2.078 1 NA NA NA NA NA LTS-011 chr22 30770312 31352808 582497 * c(MIR3200, DUSP18, MORC2-AS1, RNF215, MORC2, PES1, SEC14L2, OSBP2, SEC14L3, SEC14L4, SLC35E4, SDC4P, MTFP1, CCDC157, TCN2, SEC14L6, KIAA1656, GAL3ST1) 0.0847576913506517 48 0.0375598753670543 1.99767514357561 1239 1.0843274954973 9 9 0 -6.74439779370089 LTS-011 chr22 31352809 31354546 1738 * MORC2 NA 0 NA 4.203 1 NA NA NA NA NA LTS-011 chr22 31354547 31600451 245905 * c(MIR3928, SELENOM, MORC2, INPP5J, PLA2G3, TUG1, SMTN, RNF185) 0.0773927845395525 7 0.00610620293518929 2.69023030477969 421 1.22535836436429 11 11 0 -6.81735697403915 LTS-011 chr22 31600452 31602790 2339 * RNF185 NA 0 NA 1.65110695688272 57 0.396014201917432 6 NA NA -5.76441035435641 LTS-011 chr22 31602791 31602907 117 * RNF185 NA 0 NA 5.69 1 NA NA NA NA NA LTS-011 chr22 31602908 31796605 193698 * c(PIK3IP1, PATZ1, LIMK2, DRG1, RNF185) 0 1 NA 3.42578546582002 375 1.36479250601872 15 15 0 -5.7644465508695 LTS-011 chr22 31796606 32579515 782910 * c(C22orf42, PISD, AP1B1P1, PRR14L, C22orf24, DRG1, EIF4ENIF1, SLC5A1, YWHAH, DEPDC5, SFI1) 0 2 0 2.158121225641 1269 1.05228444225201 0 0 0 -Inf LTS-011 chr22 32579516 32579550 35 * character(0) 0.08 1 NA 0.55 1 NA NA NA NA NA LTS-011 chr22 32579551 32589468 9918 * RFPL2 0.113087101160909 8 0.0328282870185368 0.944742324563032 54 0.342440133867248 7 7 0 -6.76771762071957 LTS-011 chr22 32589469 32590303 835 * RFPL2 NA 0 NA 2.822 1 NA NA NA NA NA LTS-011 chr22 32590304 33376762 786459 * c(RFPL3S, RFPL3, RFPL2, BPIFC, FBXO7, LOC339666, RTCB, SLC5A4, TIMP3, SYN3) 0.0591658854842456 25 0.0268304553322029 2.1804356081663 616 1.40471492979464 14 14 0 -6.776925283864 LTS-011 chr22 33376763 33402271 25509 * SYN3 NA 0 NA 1.665 1 NA NA NA NA NA LTS-011 chr22 33402272 34022284 620013 * c(MIR4764, SYN3, LARGE1) 0.0506419163981722 5 0.0655499809305846 1.44741959581938 143 0.850282412687524 11 11 0 -7.0045029696016 LTS-011 chr22 34022285 35462249 1439965 * c(LARGE-AS1, ISX, LARGE1) 0.39 1 NA 1.27493587978283 25 0.676428569769196 4 4 0 -5.76704930604978 LTS-011 chr22 35462250 35462340 91 * ISX NA 0 NA 0.656 1 NA NA NA NA NA LTS-011 chr22 35462341 35485770 23430 * ISX 0.253895556700552 5 0.0465274112755051 0.535581182671836 126 0.324518687015436 2 2 0 -6.77512772638442 LTS-011 chr22 35485771 35485956 186 * character(0) NA 0 NA 2.285 1 NA NA NA NA NA LTS-011 chr22 35485957 36678569 1192613 * c(HMGXB4, TOM1, MIR3909, RBFOX2, RASD2, APOL2, HMOX1, MB, MCM5, MYH9, APOL6, APOL5, APOL4, APOL3, APOL1) 0.269050330023615 37 0.0665609747777432 0.796279988110656 1119 0.390823037151583 2 2 0 -6.80853009218882 LTS-011 chr22 36678570 36678641 72 * MYH9 NA 0 NA 1.157 1 NA NA NA NA NA LTS-011 chr22 36678642 36885576 206935 * c(TXN2, MYH9, FOXRED2) 0.211247983323543 2 0.0120208152801713 1.20630790067479 274 0.538439678464782 12 10 2 -7.06324163122199 LTS-011 chr22 36885577 36885599 23 * FOXRED2 0.287 1 NA 0.596 1 NA NA NA NA NA LTS-011 chr22 36885600 37876362 990763 * c(LL22NC01-81G9.3, CACNG2, IFT27, ELFN2, C1QTNF6, CSF2RB, TMPRSS6, CYTH4, CARD10, TEX33, IL2RB, MFNG, MPST, NCF4, PVALB, RAC2, SSTR3, TST, KCTD17, FOXRED2, EIF3D) 0.261634100010955 44 0.0977461980790078 0.769529677674393 1485 0.358684811977386 2 2 0 -6.7632084539359 LTS-011 chr22 37876363 37876701 339 * c(CARD10, MFNG) NA 0 NA 1.221 1 NA NA NA NA NA LTS-011 chr22 37876702 40030811 2154110 * c(LOC100506472, MIR4534, APOBEC3A_B, DNAL4, TAB1, DDX17, KDELR3, TRIOBP, CDC42EP1, DMC1, ANKRD54, APOBEC3D, CSNK1E, APOBEC3H, APOBEC3A, APOBEC3F, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, CBY1, SUN2, TMEM184B, GGA1, SNORD43, APOBEC3C, CARD10, H1F0, KCNJ4, LGALS1, LGALS2, LOC400927, MFNG, MGAT3, ATF4, EIF3L, PDGFB, POLR2F, MIEF1, TOMM22, PDXP, APOBEC3G, RPL3, FAM227A, SOX10, MIR658, MIR659, NOL12, NA NA NA NA NA NA NA NA NA LTS-011 BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, CACNA1I, SYNGR1, RPS19BP1, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.225497196394545 85 0.116020998051196 0.878203032108945 4351 0.495219249505054 2 2 0 -6.78190656185118 LTS-011 NA NA NA NA LTS-011 chr22 40030812 40036862 6051 * CACNA1I NA 0 NA 0.44 1 NA NA NA NA NA LTS-011 chr22 40036863 40552274 515412 * c(LOC100130899, FAM83F, ENTHD1, TNRC6B, CACNA1I, GRAP2) 0.0691980463651179 3 0.167431578064991 0.609374968148611 528 0.296160200491434 2 2 0 -7.61504871554102 LTS-011 chr22 40552275 40573854 21580 * TNRC6B NA 0 NA 3.291 1 NA NA NA NA NA LTS-011 chr22 40573855 40746082 172228 * c(ADSL, TNRC6B) 0.247 1 NA 1.01232765722502 474 0.432129146561265 3 3 0 -5.76444803402643 LTS-011 chr22 40746083 40748939 2857 * ADSL NA 0 NA 0.74 1 NA NA NA NA NA LTS-011 chr22 40748940 42908720 2159781 * c(NDUFA6-AS1, MIR1281, MIR4766, SLC25A17, TOB2, TNFRSF13C, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, ADSL, WBP2NL, POLR3H, EP300, ZC3H7B, XRCC6, CSDC2, RRP7A, DESI1, SGSM3, MCHR1, LINC00634, OGFRP1, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, MKL1, RANGAP1, XPNPEP3, SREBF2, ST13, TCF20, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, SMDT1, SERHL, RBX1) 0.222815025369956 72 0.101495715582926 0.836956535154339 3787 0.434512619994087 2 2 0 -6.76880673113083 LTS-011 chr22 42908721 42908812 92 * RRP7A NA 0 NA 1.263 1 NA NA NA NA NA LTS-011 chr22 42908813 42950113 41301 * c(SERHL2, RRP7A) 0.19258988997335 4 0.140160324866442 1.83094155213572 48 0.853011280252253 8 7 1 -6.73454501568906 LTS-011 chr22 42950114 42951965 1852 * c(SERHL2, RRP7BP) NA 0 NA 0.223 1 NA NA NA NA NA LTS-011 chr22 42951966 43579083 627118 * c(PACSIN2, CYB5R3, TTLL12, SERHL2, TTLL1, ARFGAP3, RNU12, ATP5L2, MCAT, A4GALT, BIK, TSPO, POLDIP3, RRP7BP) 0.241376032742474 23 0.052203046872446 0.853301170021879 757 0.548887948969485 2 2 0 -6.73987825473413 LTS-011 chr22 43579084 43582995 3912 * TTLL12 NA 0 NA 1.18832510399068 5 0.129001937969939 4 NA NA -5.76456329165695 LTS-011 chr22 43582996 43594368 11373 * TTLL12 NA 0 NA 0.453 1 NA NA NA NA NA LTS-011 chr22 43594369 43606143 11775 * SCUBE1 0.308 1 NA 0.546421544173954 41 0.192326446946648 1 1 0 -5.76645080175962 LTS-011 chr22 43606144 46372683 2766540 * c(MIR1249, NUP50-AS1, MIR4762, EFCAB6-AS1, NUP50, PHF21B, PNPLA5, FBLN1, KIAA0930, ARHGAP8, SAMM50, ATXN10, SULT4A1, RIBC2, SMC1B, PARVB, LINC00207, LINC00229, FAM118A, PRR5-ARHGAP8, PRR5, PARVG, EFCAB6, UPK3A, WNT7B, MPPED1, SCUBE1, PNPLA3, LDOC1L, KIAA1644) 0.348114433793477 115 0.0803667537167878 0.556613244161007 2305 0.291423235356979 1 1 0 -6.9142024269396 LTS-011 chr22 46372684 46372788 105 * WNT7B NA 0 NA 0.975 1 NA NA NA NA NA LTS-011 chr22 46372789 46505237 132449 * c(LINC00899, MIR3619, PRR34-AS1, MIRLET7BHG, PRR34, LOC730668, WNT7B) 0.278344882532111 5 0.0702445727440918 0.89245169077168 128 0.2655892311489 2 2 0 -6.87013977203045 LTS-011 chr22 46505238 46505679 442 * MIRLET7BHG NA 0 NA 0.638 1 NA NA NA NA NA LTS-011 chr22 46505680 47507521 1001842 * c(MIR4763, PKDREJ, CDPF1, GTSE1-AS1, GRAMD4, TBC1D22A, MIRLET7BHG, MIRLET7A3, MIRLET7B, GTSE1, PPARA, TTC38, TRMU, CERK, CELSR1) 0.260740179017475 20 0.143036791365755 0.621760624335703 1424 0.276798579552549 1 1 0 -6.86208397539543 LTS-011 chr22 47507522 50020722 2513201 * c(LINC01310, MIR3201, MIR4535, TBC1D22A, FAM19A5, LOC284933, C22orf34, LINC00898) 0.321094543082757 13 0.0558546648879356 0.393151243425226 304 0.171899887416026 0 0 0 -7.80735773558467 LTS-011 chr22 50020723 50050993 30271 * C22orf34 NA 0 NA 1.541 1 NA NA NA NA NA LTS-011 chr22 50050994 50312382 261389 * c(BRD1, C22orf34, ALG12, CRELD2, NA, ZBED4) 0.289661560604937 2 0.0424264068711929 0.528156206687256 319 0.169399857977072 1 1 0 -7.253683197501 LTS-011 chr22 50312383 50312436 54 * CRELD2 NA 0 NA 0.726 1 NA NA NA NA NA LTS-011 chr22 50312437 50357696 45260 * c(PIM3, CRELD2) 0.362005076027689 2 0.0212132034355964 0.988346075468791 122 0.453942337355992 6 4 2 -6.77311073163281 LTS-011 chr22 50357697 50965059 607363 * c(TYMP, MLC1, PLXNB2, NCAPH2, IL17REL, DENND6B, PIM3, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, ADM2, TRABD, SELENOO, HDAC10, TUBGCP6, LMF2, PPP6R2, SCO2) 0.299503455976132 89 0.0914693262271535 0.611909464972307 2089 0.304878156914375 1 1 0 -6.78484799025235 LTS-011 chr22 50965060 50970667 5608 * c(TYMP, ODF3B) NA 0 NA 1.09442697441047 75 0.376599434962952 3 NA NA -5.7645253780739 LTS-011 chr22 50970668 50986489 15822 * c(KLHDC7B, ODF3B) NA 0 NA 0.44 1 NA NA NA NA NA LTS-011 chr22 50986490 51171497 185008 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, MAPK8IP2, CHKB-CPT1B, ARSA, SYCE3, SHANK3) 0.278533566714035 16 0.120537062073594 0.609866216114709 566 0.318003817679975 1 1 0 -6.82623729350164 LTS-011 chr22 51171498 51183804 12307 * c(ACR, SHANK3) NA 0 NA 0.435386340183874 41 0.210145161791535 0 NA NA -5.76571748682604 LTS-011 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.198 1 NA NA NA NA NA LTS-011 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.302047089946412 63 0.15652107003884 0 NA NA -5.79235274338848 LTS-011 chrX 2699993 2777985 77993 * c(XG, GYG2) 0.455 1 NA 0.666994869944367 87 0.23732181852775 1 1 0 -5.77205846185188 LTS-011 chrX 2777986 10058822 7280837 * c(LINC01546, CLDN34, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4, GYG2) 0.368657586964948 37 0.157056535219822 0.675164478114639 1810 0.385640791000318 1 1 0 -7.1016041040812 LTS-011 chrX 10058823 10112338 53516 * WWC3 0.448360698569023 4 0.0341699185444351 0.81381477915861 166 0.320943560577721 2 1 1 -7.66112249622055 LTS-011 chrX 10112339 10204551 92213 * c(CLCN4, WWC3) 0 1 NA 0.69621036794154 133 0.231323428545863 1 1 0 -5.78428524924115 LTS-011 chrX 10204552 11793609 1589058 * c(MSL3, CLCN4, AMELX, HCCS, ARHGAP6, MID1) 0.305423706398583 3 0.268216951987255 0.825551697644442 599 0.383166676606885 2 2 0 -6.764146123661 LTS-011 chrX 11793610 12841950 1048341 * c(MSL3, PRPS2, FRMPD4) 0.137186524925334 6 0.238302049228845 0.586677089772955 305 0.515006169744492 1 1 0 -7.09176106694363 LTS-011 chrX 12841951 12937513 95563 * c(TLR8-AS1, TLR7, TLR8, PRPS2) 0.352 1 NA 0.58629174262187 135 0.233323318429946 1 1 0 -5.76555403579221 LTS-011 chrX 12937514 12993260 55747 * c(TLR8-AS1, TLR8, TMSB4X) 0.46 1 NA 0.505873971524872 81 0.117156939430791 1 1 0 -5.84276159713516 LTS-011 chrX 12993261 12993342 82 * TMSB4X NA 0 NA 0.711 1 NA NA NA NA NA LTS-011 chrX 12993343 13053943 60601 * c(FAM9C, TMSB4X) NA 0 NA 1.31638531614853 38 0.431669075347846 4 NA NA -5.76534946138016 LTS-011 chrX 13053944 13054022 79 * FAM9C NA 0 NA 0.566 1 NA NA NA NA NA LTS-011 chrX 13054023 13734125 680103 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, TRAPPC2, ATXN3L, RAB9A) 0.460169766799759 10 0.0232477000057114 0.692930500819201 358 0.278860742223344 2 1 1 -9.28015629336 LTS-011 chrX 13734126 13734586 461 * TRAPPC2 NA 0 NA 0.983 1 NA NA NA NA NA LTS-011 chrX 13734587 13779376 44790 * c(TRAPPC2, OFD1) NA 0 NA 1.1813353921682 117 0.45665602258049 4 NA NA -5.76460469723692 LTS-011 chrX 13779377 13780371 995 * OFD1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-011 chrX 13780372 17171300 3390929 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, FANCB, VEGFD, GLRA2, GPM6B, GRPR, CA5BP1, PIGA, GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, MAGEB17, BMX, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, REPS2, SYAP1) 0.338529433909885 16 0.178125318713165 0.737041437468116 2170 0.325438965281549 2 1 1 -6.9899247720263 LTS-011 chrX 17171301 17394070 222770 * c(NHS, REPS2) 0 1 NA 1.49510138923766 10 0.62331130977136 5 5 0 -5.76497858889268 LTS-011 chrX 17394071 19552453 2158383 * c(PHKA2-AS1, MIR4768, ADGRG2, SCML2, RAI2, BEND2, SH3KBP1, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, RS1, SCML1, CDKL5) 0.113058399961092 9 0.220902001902302 0.717395437996436 1424 0.388945835922438 2 2 0 -7.0736229910844 LTS-011 chrX 19552454 20172219 619766 * c(SCARNA9L, MIR23C, EIF1AX, CXorf23, MAP7D2, SH3KBP1, RPS6KA3, LOC729609) 0.441 1 NA 0.702537041042255 721 0.345980105924437 2 2 0 -5.83030834730831 LTS-011 chrX 20172220 22269448 2097229 * c(PHEX-AS1, CNKSR2, SMPX, KLHL34, YY2, MBTPS2, PHEX, RPS6KA3, SMS) 0.353554327195385 5 0.186463669383609 0.723257093393643 915 0.369133944006909 2 1 1 -6.89846695597341 LTS-011 chrX 22269449 22290986 21538 * PTCHD1-AS NA 0 NA 0.567 1 NA NA NA NA NA LTS-011 chrX 22290987 23412405 1121419 * c(PTCHD1-AS, PTCHD1, ZNF645, DDX53) 0.291205865705475 2 0.206475180106472 0.511708017910561 193 0.234843402238874 1 1 0 -7.08014817761716 LTS-011 chrX 23412406 23412602 197 * PTCHD1 NA 0 NA 0.926 1 NA NA NA NA NA LTS-011 chrX 23412603 24329918 917316 * c(ZFX-AS1, PRDX4, PTCHD1, SUPT20HL2, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.383398545980004 18 0.154310282867646 0.739742284177049 905 0.348179433576396 2 1 1 -6.78263601704406 LTS-011 chrX 24329919 24329956 38 * SUPT20HL2 NA 0 NA 0.449 1 NA NA NA NA NA LTS-011 chrX 24329957 24382354 52398 * c(SUPT20HL1, SUPT20HL2) 0.397 1 NA 0.397448661035054 78 0.200316631229793 0 0 0 -5.76441598250496 LTS-011 chrX 24382355 24382511 157 * SUPT20HL1 NA 0 NA 0.492 1 NA NA NA NA NA LTS-011 chrX 24382512 30848493 6465982 * c(SUPT20HL1, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB6, ARX, NR0B1, TAB3, GK, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, PDK3, POLA1, SCARNA23, CXorf21, PCYT1B) 0.382345293761372 18 0.174559613953312 0.593544747601663 1358 0.298443016515003 1 1 0 -6.81257365488959 LTS-011 chrX 30848494 37672152 6823659 * c(MAGEB16, CYBB, FAM47A, FAM47B, NA, DMD, TAB3, CFAP47, LANCL3, FTH1P18, FAM47C, FTHL17, PRRG1, NA, XK, TMEM47) 0.349393209179309 19 0.18879850950943 0.681995515439716 1632 0.303580143550602 1 1 0 -7.30645455007472 LTS-011 chrX 37672153 41092061 3419909 * c(LOC100132831, ATP6AP2, CYBB, CXorf38, HYPM, LINC01281, MPC1L, OTC, BCOR, MID1IP1, RPGR, DYNLT3, TSPAN7, USP9X, SRPX, MED14, SYTL5) 0.310666929394958 10 0.205880116140977 0.83364749689128 1485 0.3769474526022 2 2 0 -6.8010906707203 LTS-011 chrX 41092062 41198439 106378 * c(DDX3X, USP9X) 0.454 1 NA 2.234337774122 40 0.658268823194403 9 9 0 -5.76443776205951 LTS-011 chrX 41198440 41200756 2317 * DDX3X NA 0 NA 0.937 1 NA NA NA NA NA LTS-011 chrX 41200757 45007889 3807133 * c(FUNDC1, DDX3X, GPR82, GPR34, MAOA, MAOB, NDP, NYX, DUSP21, KDM6A, CXorf36, EFHC2, PPP1R2P9, CASK) 0.217455458437048 4 0.259719560295331 0.779706702606792 1165 0.36067846492137 2 2 0 -6.77123331197017 LTS-011 chrX 45007890 45008008 119 * CXorf36 NA 0 NA 0.596 1 NA NA NA NA NA LTS-011 chrX 45008009 47002190 1994182 * c(LOC392452, ZNF674-AS1, MIR221, MIR222, NDUFB11, KRBOX4, CHST7, RP2, ZNF674, LINC01545, CXorf36, SLC9A7, RGN, JADE3) 0.351932385083768 4 0.229509622165753 0.629651076808751 702 0.255734052036963 1 1 0 -6.76728715900974 LTS-011 chrX 47002191 47003892 1702 * NDUFB11 NA 0 NA 1.108 1 NA NA NA NA NA LTS-011 chrX 47003893 47099387 95495 * c(CDK16, NDUFB11, UBA1, USP11, RBM10, INE1) 0.165992307273046 6 0.230019491927677 0.974056259277345 477 0.388010464331263 3 3 0 -6.74409134059101 LTS-011 chrX 47099388 47099620 233 * USP11 NA 0 NA 0.934 1 NA NA NA NA NA LTS-011 chrX 47099621 47765057 665437 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, ZNF81, ARAF, CXXC1P1, CFP, SYN1, TIMP1, ZNF41, ZNF157, USP11, UXT) 0.413501134834525 11 0.142704144043797 0.76363626504104 804 0.390235145229713 2 1 1 -6.74709484547604 LTS-011 chrX 47765058 47765161 104 * ZNF81 NA 0 NA 0.619 1 NA NA NA NA NA LTS-011 chrX 47765162 48318221 553060 * c(SSX3, SSX6, SSX9, ZNF81, SPACA5, ZNF630, SSX1, SSX5, ZNF182, SLC38A5) 0.232089263055566 4 0.27283984924005 0.525551688689962 423 0.328337566888087 1 1 0 -6.86559320322034 LTS-011 chrX 48318222 48319049 828 * SLC38A5 NA 0 NA 1.285 1 NA NA NA NA NA LTS-011 chrX 48319050 48761923 442874 * c(HDAC6, PQBP1, TIMM17B, EBP, FTSJ1, GATA1, PCSK1N, ERAS, GLOD5, TBC1D25, RBM3, WDR13, PORCN, SUV39H1, SLC35A2, WAS, SLC38A5) 0.285717113905196 8 0.218760142622005 0.675090521237779 984 0.296283959294926 1 1 0 -6.78885697780193 LTS-011 chrX 48761924 49065518 303595 * c(PIM2, WDR45, PRAF2, GPKOW, KCND1, PRICKLE3, PLP2, OTUD5, GRIPAP1, SYP, TFE3, SLC35A2, CACNA1F, MAGIX, CCDC120) 0.384138473455135 7 0.171061114113947 0.787568863863718 1095 0.349089361526799 2 1 1 -6.74137488296474 LTS-011 chrX 49065519 52891732 3826214 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, CCDC22, USP27X, MIR188, SPANXN5, FOXP3, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, GAGE12J, GAGE2D, GAGE2A, CACNA1F, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.381544447286887 28 0.121338478872229 0.621192992568209 1696 0.300495798799267 1 1 0 -6.87013503331028 LTS-011 chrX 52891733 52896243 4511 * XAGE3 NA 0 NA 0.530767337800913 17 2.17160084621786 1 NA NA -5.76442020141342 LTS-011 chrX 52896244 53105648 209405 * c(XAGE3, GPR173, FAM156B) NA 0 NA 0.877 1 NA NA NA NA NA LTS-011 chrX 53105649 53403134 297486 * c(IQSEC2, GPR173, TSPYL2, KDM5C, SMC1A) 0 1 NA 0.766649812846973 575 0.4388921724726 2 2 0 -5.76764681231024 LTS-011 chrX 53403135 54095549 692415 * c(HUWE1, RIBC1, PHF8, HSD17B10, MIRLET7F2, MIR98, FAM120C, SMC1A) 0.216639744300238 9 0.23533120867785 0.728026179562171 1057 0.354081138597702 2 2 0 -6.7825349358778 LTS-011 chrX 54095550 55034574 939025 * c(MAGED2, FGD1, APEX2, ITIH6, PFKFB1, GNL3L, FAM120C, WNK3, SNORA11, TRO, TSR2) 0.0549637780381994 5 0.180227078986483 0.632407434043358 1208 0.297625015514176 2 2 0 -7.71684599041058 LTS-011 chrX 55034575 55172471 137897 * c(PAGE2, ALAS2, PAGE2B, FAM104B) 0.236 1 NA 0.596624445041076 135 0.233216831849294 1 1 0 -5.76477504966877 LTS-011 chrX 55172472 57622607 2450136 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, FAM104B, PAGE5) 0.285925162812324 10 0.153290754957876 0.655484732252533 730 0.345958501025291 1 1 0 -6.84950893673839 LTS-011 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 0.742127873848573 131 0.31680658115788 2 NA NA -5.78015598848438 LTS-011 chrX 61999880 63408386 1408507 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.726446562278488 323 0.478579649418615 2 2 0 -5.81114476208245 LTS-011 chrX 63408387 66900709 3492323 * c(VSIG4, AMER1, ASB12, ZC3H12B, AR, MIR223, MSN, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, HEPH) 0.0830612939798518 5 0.21689859381748 0.606701327319167 1040 0.308605830455155 1 1 0 -7.40665701856368 LTS-011 chrX 66900710 66905840 5131 * AR NA 0 NA 1.225 1 NA NA NA NA NA LTS-011 chrX 66905841 68424847 1519007 * c(EFNB1, YIPF6, AR, OPHN1, PJA1, STARD8) 0.36606076621384 9 0.200116840870527 0.778993994231511 773 0.313324277615455 2 1 1 -6.76993185242356 LTS-011 chrX 68424848 68428365 3518 * character(0) NA 0 NA 0.571 1 NA NA NA NA NA LTS-011 chrX 68428366 69639716 1211351 * c(MIR676, OTUD6A, AWAT1, AWAT2, EDA, KIF4A, FAM155B, DGAT2L6, RAB41, IGBP1, ARR3, P2RY4, PDZD11) 0.266452045762801 9 0.212882596752294 0.587684946328042 814 0.322125645409663 1 1 0 -6.78678341363518 LTS-011 chrX 69639717 69639908 192 * KIF4A NA 0 NA 1.198 1 NA NA NA NA NA LTS-011 chrX 69639909 70510477 870569 * c(CXorf65, DLG3, KIF4A, GJB1, SNX12, IL2RG, FOXO4, NONO, NLGN3, GDPD2, TEX11, BCYRN1, SLC7A3, ZMYM3, MED12) 0.371614969173916 9 0.207810276721608 0.723533865199275 1258 0.289812356891334 2 1 1 -6.83007609680554 LTS-011 chrX 70510478 71934101 1423624 * c(ITGB1BP2, INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, CITED1, NONO, PHKA1, PIN4, ERCC6L, HDAC8, BCYRN1, RPS4X, TAF1, OGT, ACRC) 0.281774120142327 10 0.147773851242739 0.533185484686312 1511 0.29016777018308 1 1 0 -6.94880285340147 LTS-011 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.133 1 NA NA NA NA NA LTS-011 chrX 72066651 72224970 158320 * c(PABPC1L2B, FAM226B) NA 0 NA 0.142260435486859 42 0.137196672077964 0 NA NA -8.83728123740721 LTS-011 chrX 72224971 72667293 442323 * c(CDX4, PABPC1L2A, NAP1L2, PABPC1L2B, NAP1L6) 0.351570093831899 5 0.0235435766186873 0.347413304962995 167 0.173700495068004 0 0 0 -8.88319691808777 LTS-011 chrX 72667294 77914252 5246959 * c(MIR374B, FTX, MIR374C, CDX4, CYSLTR1, COX7B, MAP2K4P1, UPRT, MAGEE2, ZDHHC15, ZCCHC5, ABCB7, TTC3P1, KIAA2022, ZCCHC13, PGAM4, MIR374A, MIR384, RLIM, PBDC1, TAF9B, PGK1, CHIC1, ATP7A, ATRX, JPX, MAGEE1, SLC16A2, MIR545, MIR421, XIST, MAGT1, FGF16, TSIX) 0.114204629477636 7 0.186147279120081 0.547337632331887 2554 0.26166367740141 1 1 0 -7.86763478978427 LTS-011 chrX 77914253 78010262 96010 * c(ZCCHC5, LPAR4) NA 0 NA 0.353 1 NA NA NA NA NA LTS-011 chrX 78010263 79939692 1929430 * c(MIR4328, FAM46D, BRWD3, P2RY10, LPAR4, TBX22, GPR174, ITM2A) 0.388188126781496 3 0.0642676694250953 0.445284114217572 440 0.209999060436321 0 0 0 -7.0698669233423 LTS-011 chrX 79939693 79940934 1242 * BRWD3 NA 0 NA 0.709 1 NA NA NA NA NA LTS-011 chrX 79940935 84634408 4693474 * c(UBE2DNL, APOOL, HDX, CYLC1, BRWD3, RPS6KA6, SATL1, POU3F4, SH3BGRL, ZNF711, HMGN5, POF1B) 0.41415509628159 8 0.0333785110512737 0.593871228016517 971 0.291076572035437 2 1 1 -9.0268335517773 LTS-011 chrX 84634409 84634430 22 * POF1B NA 0 NA 0.929 1 NA NA NA NA NA LTS-011 chrX 84634431 88008808 3374378 * c(CHM, DACH2, CPXCR1, KLHL4, POF1B) 0.343653109571913 10 0.0709936616889142 1.00419514614615 545 0.511841804142276 3 2 1 -6.89554917383879 LTS-011 chrX 88008809 90693597 2684789 * c(PABPC5, CPXCR1, TGIF2LX) 0.2916448897951 2 0.0834386001800126 0.65869073656184 125 0.239210717474863 1 1 0 -7.02539893619402 LTS-011 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.245 1 NA NA NA NA NA LTS-011 chrX 91066177 91138400 72224 * PCDH11X NA 0 NA 0.283898422582628 142 0.111910880392992 0 NA NA -6.13818521863772 LTS-011 chrX 91138401 91873721 735321 * PCDH11X 0.412 1 NA 0.597206447424658 53 0.221002515271135 1 1 0 -5.76631233481984 LTS-011 chrX 91873722 91878140 4419 * PCDH11X 0.421529171945704 5 0.038555155297314 0.295101417979967 119 0.358146513230922 0 0 0 -6.87578773237695 LTS-011 chrX 91878141 99957165 8079025 * c(DIAPH2, SRPX2, PCDH11X, FAM133A, RPA4, XRCC6P5, NAP1L3, PCDH19, TNMD, BRDTP1, TSPAN6, SYTL4) 0.296332744686783 9 0.136906395435389 0.623839195231191 950 0.270999450758806 1 1 0 -6.81727258791995 LTS-011 chrX 99957166 100075365 118200 * c(CSTF2, SYTL4) NA 0 NA 1.293 1 NA NA NA NA NA LTS-011 chrX 100075366 100912745 837380 * c(ARMCX4, RPL36A-HNRNPH2, CSTF2, TIMM8A, DRP2, CENPI, NOX1, GLA, HNRNPH2, ARL13A, XKRX, ARMCX1, ARMCX3, TAF7L, ARMCX6, TMEM35A, RPL36A, BTK, TRMT2B, ARMCX2) 0.196441513758848 8 0.134987763995747 1.19452782354944 1475 2.15022487748674 3 3 0 -6.7357197789258 LTS-011 chrX 100912746 101032380 119635 * ARMCX2 NA 0 NA 0.623 1 NA NA NA NA NA LTS-011 chrX 101032381 101138341 105961 * c(NXF5, ZMAT1) NA 0 NA 0.712791422495615 94 0.223292010368269 2 NA NA -5.78653199689374 LTS-011 chrX 101138342 101609367 471026 * c(TCEAL2, TCEAL6, BEX5, ZMAT1) NA 0 NA 0.394568183308463 121 0.209589948934139 0 NA NA -5.76505417862032 LTS-011 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.031 1 NA NA NA NA NA LTS-011 chrX 101615285 101625090 9806 * character(0) NA 0 NA 0.169591259923105 43 0.171699949466309 0 NA NA -5.90665961166129 LTS-011 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.413 1 NA NA NA NA NA LTS-011 chrX 101768565 108628579 6860015 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, TSC22D3, NRK, TMEM31, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, SLC25A53, GLRA4, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, ZCCHC18, ARMCX5, SERPINA7, RNF128, MORC4, NA NA NA NA NA NA NA NA NA LTS-011 TCEAL4, ESX1, BHLHB9, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, RIPPLY1, TCEAL1, MORF4L2, GPRASP1) 0.290726251779689 29 0.135005801736307 0.515819049559283 4176 0.252571391444309 1 1 0 -8.10414141284868 LTS-011 NA NA NA NA LTS-011 chrX 108628580 109439216 810637 * c(MIR3978, ACSL4, KCNE5, GUCY2F, NXT2, TMEM164, AMMECR1) 0 1 NA 0.530332173464937 521 0.212862850717802 1 1 0 -5.94925775469551 LTS-011 chrX 109439217 117080877 7641661 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, SLC6A14, RBMXL3, AMOT, DCX, AGTR2, CT83, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, MIR448, RGAG1, LRCH2, SNORA35, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, KLHL13, CHRDL1, AMMECR1) 0.213547596429909 15 0.177104488932381 0.484905791131264 2245 0.24326463715721 0 0 0 -9.41909379213726 LTS-011 chrX 117080878 123512053 6431176 * c(ZBTB33, MIR1277, SLC25A5-AS1, TENM1, STAG2, PGRMC1, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, SOWAHD, IL13RA1, LAMP2, SH2D1A, NDUFA1, WDR44, TMEM255A, NKRF, THOC2, KIAA1210, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, LONRF3, NA NA NA NA NA NA NA NA NA LTS-011 CUL4B, KLHL13) 0.212866757344123 47 0.113780583917449 0.757940184079055 3361 0.372557118249638 2 2 0 -6.91761406576082 LTS-011 NA NA NA NA LTS-011 chrX 123512054 128650467 5138414 * c(TEX13C, PRR32, TENM1, DCAF12L1, ACTRT1, DCAF12L2, SMARCA1) 0.301557503042633 4 0.0730770141699837 0.582990154203625 570 0.23808610456941 1 1 0 -6.88157612910838 LTS-011 chrX 128650468 128652303 1836 * SMARCA1 NA 0 NA 1.107 1 NA NA NA NA NA LTS-011 chrX 128652304 135390818 6738515 * c(MIR450B, LINC00633, LINC00629, HS6ST2-AS1, SLC9A6, ENOX2, PLAC1, UTP14A, ADGRG4, GPR119, ARHGAP36, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, GPC4, FHL1, FAM127B, GPC3, FIRRE, HPRT1, OR13H1, CCDC160, IGSF1, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, NA NA NA NA NA NA NA NA NA LTS-011 MIR450A2, MIR503, RAP2C, BCORL1, SMIM10, SMIM10L2B, SMARCA1, MIR542, CT45A2, XPNPEP2, ZNF75D, MAP7D3, USP26, PHF6, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A) 0.177568739477364 41 0.131408105700913 0.716363021045878 4247 0.362001772151511 2 2 0 -7.34995470420745 LTS-011 NA NA NA NA LTS-011 chrX 135390819 135390911 93 * ADGRG4 NA 0 NA 0.441 1 NA NA NA NA NA LTS-011 chrX 135390912 135498739 107828 * ADGRG4 0.157070831940366 2 0.227688383542068 0.514343416408743 251 0.922735007598071 3 3 0 -6.7860465390985 LTS-011 chrX 135498740 135498871 132 * ADGRG4 NA 0 NA 1.821 1 NA NA NA NA NA LTS-011 chrX 135498872 135738599 239728 * c(MIR934, LINC00892, ADGRG4, HTATSF1, VGLL1, BRS3, CD40LG) NA 0 NA 0.713784444861805 193 0.348742087135766 2 NA NA -5.78450425085646 LTS-011 chrX 135738600 135741140 2541 * CD40LG NA 0 NA 1.999 1 NA NA NA NA NA LTS-011 chrX 135741141 136659829 918689 * c(SNORD61, RBMX, ZIC3, GPR101, ARHGEF6, CD40LG) 0 1 NA 2.32941607949205 392 0.896586531268651 9 9 0 -5.76494680640524 LTS-011 chrX 137713748 139015247 1301500 * c(FGF13-AS1, F9, FGF13, ATP11C, MCF2, MIR504, MIR505, SRD5A1P1) 0.104379238324084 4 0.1572606647152 0.718597505185651 545 0.361844758932499 2 2 0 -7.27187661981115 LTS-011 chrX 139015248 139037813 22566 * character(0) NA 0 NA 0.563 1 NA NA NA NA NA LTS-011 chrX 139037814 146558174 7520361 * c(MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, NA, NA, LDOC1, LINC00632, CXorf66, LOC389895, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SLITRK2, TMEM257, MAGEC1) 0.242886802816364 21 0.140283488489762 0.545124141811795 1030 0.339741181835641 1 1 0 -7.34668667427428 LTS-011 chrX 146558175 146993629 435455 * c(FMR1-AS1, FMR1) NA 0 NA 1.736 1 NA NA NA NA NA LTS-011 chrX 146993630 148628432 1634803 * c(FMR1-AS1, LINC00893, FMR1NB, FMR1, AFF2, IDS, CXorf40A) 0.138956743692925 9 0.144998275851818 0.780865450878891 785 0.390469339108168 2 2 0 -7.05201464455082 LTS-011 chrX 148628433 148664788 36356 * CXorf40A NA 0 NA 0.238426069357197 48 0.146124449049189 0 NA NA -6.02259560199781 LTS-011 chrX 148664789 149014630 349842 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.232333333333333 2 0.0608111831820431 0.568382999588996 153 0.244163726353031 2 2 0 -7.18272039064045 LTS-011 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.219 1 NA NA NA NA NA LTS-011 chrX 149097210 149100892 3683 * CXorf40B NA 0 NA 0.305380986304306 42 0.166374387155926 0 NA NA -5.77006200204972 LTS-011 chrX 149100893 150159266 1058374 * c(LINC00894, MIR2114, MAMLD1, HMGB3, MTM1, CXorf40B, CD99L2, MTMR1) 0.229134863095631 4 0.0277653861249338 0.791077034396759 569 0.334737172018657 2 2 0 -6.94195313622624 LTS-011 chrX 150159267 150336624 177358 * character(0) NA 0 NA 0.576 1 NA NA NA NA NA LTS-011 chrX 150336625 151825765 1489141 * c(MIR4330, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, GABRQ, MIR452, MIR767, PRRG3, FATE1, GPR50) 0.150595720569105 18 0.120074486686145 0.643006204785874 938 0.389839120317694 2 2 0 -7.39537643049616 LTS-011 chrX 151825766 151936079 110314 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0 1 NA 0.35098282362828 122 0.315780930376904 0 0 0 -5.77510691125198 LTS-011 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 0.793 1 NA NA NA NA NA LTS-011 chrX 151995517 153191752 1196236 * c(NA, NA, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, DUSP9, ABCD1, SRPK3, PNMA3, IDH3G, L1CAM, ARHGAP4, MAGEA1, ATP2B3, NSDHL, PLXNB3, AVPR2, HAUS7, PDZD4, BGN, SLC6A8, SSR4, ZNF185, FAM58A) 0.191875191731275 30 0.0963960699346741 0.714405715596503 2198 0.328198160835009 2 2 0 -7.02406426838409 LTS-011 chrX 153191753 153194663 2911 * character(0) NA 0 NA 1.166 1 NA NA NA NA NA LTS-011 chrX 153194664 154010069 815406 * c(MIR718, MIR3202-2, MIR3202-1, GAB3, TEX28, DKC1, DNASE1L1, EMD, FLNA, G6PD, OPN1MW, GDI1, SNORA70, HCFC1, CTAG2, IRAK1, MECP2, MPP1, ATP6AP1, PLXNA3, OPN1LW, RENBP, FAM3A, RPL10, SNORA36A, SNORA56, TAZ, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.167066423850403 13 0.13289874688302 0.863491993227833 2317 0.384256043292767 3 3 0 -6.85276673842742 LTS-011 chrX 154010070 154051788 41719 * c(SMIM9, MPP1) NA 0 NA 0.819307051047705 76 0.341758943465415 2 NA NA -5.76442159016754 LTS-011 chrX 154051789 154225435 173647 * c(SMIM9, F8) NA 0 NA 0.577647372117989 233 0.144711326656726 1 NA NA -5.77576237729903 LTS-011 chrX 154225436 154227731 2296 * F8 NA 0 NA 0.77 1 NA NA NA NA NA LTS-011 chrX 154227732 154564019 336288 * c(CMC4, RAB39B, CLIC2, F8, MTCP1, FUNDC2, VBP1, BRCC3) NA 0 NA 0.809021416435341 467 0.380968170383626 2 NA NA -5.7644495151235 LTS-011 chrX 154564020 154577837 13818 * character(0) NA 0 NA 0.571 1 NA NA NA NA NA LTS-011 chrX 154577838 154580266 2429 * character(0) NA 0 NA 0.274625317611093 40 0.238789402709069 0 NA NA -5.76795100329083 LTS-011 chrX 154580267 154774986 194720 * TMLHE NA 0 NA 0.713776163039835 39 0.308251306155041 2 NA NA -5.7853020632664 LTS-011 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.341112962414569 27 0.205200388474777 0 NA NA -5.99163409968988 LTS-011 chrY 13309514 13311491 1978 * character(0) 0.5 1 NA 0.89661082840119 10 0.80084039192172 2 2 0 -5.76442770758147 LTS-011 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.73783305982969 3 0.364308019858654 6 NA NA -5.7644115741782 LTS-011 chr1 65893 865692 799800 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.177 1 NA 0.629207293773884 51 0.254458864505621 1 1 0 -5.87396234432212 LTS-012 chr1 865693 1608229 742537 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.192009522061694 65 0.106103004651866 0.767567260515196 3101 0.467163295071319 1 1 0 -6.93703826941804 LTS-012 chr1 1608230 1608309 80 * c(SLC35E2B, CDK11B) NA 0 NA 1.971 1 NA NA NA NA NA LTS-012 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.007 1 NA NA NA NA NA LTS-012 chr1 1630372 1636501 6130 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 0.423754191840666 61 0.285579241680288 1 NA NA -5.76775920954322 LTS-012 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.003 1 NA NA NA NA NA LTS-012 chr1 1637054 1646768 9715 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.204706798662436 52 0.163601800172271 0 NA NA -5.76497875989226 LTS-012 chr1 1646769 1646772 4 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.205 1 NA NA NA NA NA LTS-012 chr1 1646773 1647814 1042 * c(CDK11A, SLC35E2B, CDK11B) 0.485 1 NA 0.887739067307929 2 0.0523259018078046 2 2 0 -5.76443834432115 LTS-012 chr1 1647815 1650967 3153 * c(CDK11A, SLC35E2B, CDK11B) 0.402870534891156 10 0.119623297619374 0.856452938764159 18 0.130487885396669 2 1 1 -6.76438306532263 LTS-012 chr1 1650968 1656666 5699 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) NA 0 NA 0.568747940808643 20 0.322046351681833 1 NA NA -5.76442562119676 LTS-012 chr1 1656667 1658945 2279 * c(SLC35E2B, SLC35E2) 0.11 1 NA 0.230752350260342 27 0.233784636814005 0 0 0 -5.76452803458243 LTS-012 chr1 1658946 1662163 3218 * c(SLC35E2B, SLC35E2) 0.155919495605135 2 0.0325269119345812 0.319479402505152 65 0.159677675634867 8 7 1 -7.09156396922201 LTS-012 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 0.851 1 NA NA NA NA NA LTS-012 chr1 1663709 7289777 5626069 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-012 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.163801797124241 118 0.0674778742153266 0.727024581552278 5448 0.548560253065887 2 2 0 -7.43633340376325 LTS-012 NA NA NA NA LTS-012 chr1 7289778 7527969 238192 * CAMTA1 NA 0 NA 0.782055986328742 15 0.468964238660964 2 NA NA -5.77673708120168 LTS-012 chr1 7527970 7568644 40675 * CAMTA1 NA 0 NA 0.978 1 NA NA NA NA NA LTS-012 chr1 7568645 7723957 155313 * CAMTA1 0.432 1 NA 1.23072490189733 35 0.400272495418103 3 3 0 -5.76443488259756 LTS-012 chr1 7723958 16863352 9139395 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, CROCCP3, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, C1orf64, SLC2A7, DFFA, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, SZRD1, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, NA NA NA NA NA NA NA NA NA LTS-012 FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, FBLIM1, CASZ1, TMEM51, VPS13D, NECAP2, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.435732117054177 273 0.0697700265456459 0.998084611333784 10802 0.569669075820281 2 1 1 -6.92105711308977 LTS-012 NA NA NA NA LTS-012 chr1 16863353 16863398 46 * character(0) 0.266 1 NA 0.966995205152839 3 0.526969954867764 2 2 0 -5.76441067277771 LTS-012 chr1 16863399 16975831 112433 * c(MST1P2, NBPF1, CROCCP2) 0.329442355631757 9 0.0914687256813922 0.97524242490729 63 0.589532558891221 3 2 1 -6.8143564625456 LTS-012 chr1 16975832 16975852 21 * MST1P2 NA 0 NA 0.553 1 NA NA NA NA NA LTS-012 chr1 16975853 17012093 36241 * MST1P2 0.3233663374023 11 0.111852012620573 0.557476217509931 138 0.294748295241666 3 2 1 -6.95539212260313 LTS-012 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.013 1 NA NA NA NA NA LTS-012 chr1 17017583 17046605 29023 * ESPNP 0.32394417038407 15 0.0383800543437418 1.6597611894533 76 1.65848441418823 19 13 6 -6.74784725769196 LTS-012 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.444 1 NA NA NA NA NA LTS-012 chr1 17081542 17085385 3844 * c(MST1L, CROCC) 0.324193608529209 10 0.111001701688658 0.628767130163441 109 0.359435340994871 7 5 2 -6.78991666817181 LTS-012 chr1 17085386 17256547 171162 * c(MST1L, CROCC) 0.333605212508982 15 0.130440389596533 1.23220663065162 95 0.835962980395224 3 2 1 -6.75923483566051 LTS-012 chr1 17256548 17270751 14204 * CROCC 0.491 1 NA 1.43747831236961 35 0.571653437058538 4 4 0 -5.76464283782613 LTS-012 chr1 17270752 19062326 1791575 * c(PADI2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.44884172950337 57 0.0687248700939009 1.17661425134095 1522 0.975833414063242 2 1 1 -6.85849055475392 LTS-012 chr1 19062327 19062330 4 * PAX7 NA 0 NA 0.973 1 NA NA NA NA NA LTS-012 chr1 19062331 22154949 3092619 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, ALPL, TMCO4, PLA2G2D, PLA2G2E, HSPG2, HTR6, LINC01141, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RAP1GAP, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, CAPZB, USP48, NBPF3, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.427342875626394 121 0.104104397035349 1.04854638100053 4541 0.524183151860932 2 1 1 -6.8922057544519 LTS-012 chr1 22154950 22155245 296 * HSPG2 NA 0 NA 1.313 1 NA NA NA NA NA LTS-012 chr1 22155246 22222765 67520 * HSPG2 0.450611787424013 23 0.0989241534828198 1.32304836222525 483 0.656827874043533 4 2 2 -6.7614722948255 LTS-012 chr1 22222766 24288235 2065470 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, ZNF436-AS1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, LINC00339, HMGCL, HSPG2, HTR1D, ID3, WNT4, ASAP3, PNRC2, PITHD1, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, ZBTB40, CDC42) 0.432548142453998 91 0.0958152411652783 0.981214667912139 2565 0.509592817816178 2 1 1 -6.77095548440058 LTS-012 chr1 24288236 24289764 1529 * PNRC2 0.424742209757734 3 0.0175023807904334 0.337237124215124 42 0.131880361437436 0 0 0 -6.80094684817418 LTS-012 chr1 24289765 24289858 94 * PNRC2 NA 0 NA 0.674 1 NA NA NA NA NA LTS-012 chr1 24289859 25599266 1309408 * c(RCAN3AS, SRRM1, RCAN3, MYOM3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, PNRC2, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.385589180925325 36 0.144665292400758 0.902934648364518 1564 0.536665953174188 2 1 1 -6.78959177816518 LTS-012 chr1 25599267 25656954 57688 * c(RSRP1, RHD) NA 0 NA 1.9578909196926 78 1.30939711490777 5 NA NA -5.76441743708973 LTS-012 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.874 1 NA NA NA NA NA LTS-012 chr1 25666924 33624024 7957101 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, AZIN2, TMEM54, RAB42, FAM46B, KDF1, RNF19B, COL16A1, DCDC2B, LINC01225, PDIK1L, PAQR7, FAM76A, TXLNA, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, HMGN2, HPCA, MTMR9LP, NA NA NA NA NA NA NA NA NA LTS-012 ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, TRIM62, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.417864035570031 148 0.0920370407939249 0.921853409390908 10458 0.469437894114922 2 1 1 -6.75902962452971 LTS-012 NA NA NA NA LTS-012 chr1 33624025 33625311 1287 * TRIM62 NA 0 NA 1.262 1 NA NA NA NA NA LTS-012 chr1 33625312 39339254 5713943 * c(MIR4255, MIR3659, MIR3605, TMEM35B, GJA9-MYCBP, MIR5581, SF3A3, SMIM12, CSMD2, GJB4, HMGB4, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, CSF3R, ZNF362, MANEAL, PHC2, AGO3, AGO4, FHL3, NCDN, MYCBP, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, TFAP2E, INPP5B, CSMD2-AS1, MTF1, UTP11, POU3F1, ADPRHL2, C1orf109, CDCA8, EVA1B, TRIM62, MAP7D1, PSMB2, DLGAP3, CLSPN, RRAGC, NA NA NA NA NA NA NA NA NA LTS-012 SFPQ, MEAF6, MRPS15, LOC653160, LINC01137, ZSCAN20, DNALI1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, LSM10, C1orf94, ZMYM4, ZMYM6, THRAP3) 0.431794135407932 70 0.112265568024997 1.03251387762341 5906 0.501389062256054 2 1 1 -6.98904317011442 LTS-012 NA NA NA NA LTS-012 chr1 39339255 41091572 1752318 * c(GJA9-MYCBP, ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, MACF1, HEYL, ZFP69, BMP8A, MYCL, NDUFS5, HPCAL4, TRIT1, RHBDL2, PPT1, RLF, OXCT2, RRAGC, KIAA0754, SMAP2, EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, AKIRIN1, NT5C1A, MFSD2A, PABPC4, RIMS3) 0.42058908423966 57 0.112637301344339 0.912649546903818 3025 0.481407088705114 2 1 1 -6.73861910011259 LTS-012 chr1 41091573 47284447 6192875 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, SLFNL1-AS1, MKNK1-AS1, MIR5584, TSPAN1, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4B1, CITED4, DPH2, EDN2, SLFNL1, FAAH, FOXJ3, SCMH1, MAST2, SZT2, MMACHC, BEST4, SNORD55, RIMKLA, GUCA2A, GUCA2B, C1orf228, TCTEX1D4, IPP, NA NA NA NA NA NA NA NA NA LTS-012 SVBP, TEX38, NSUN4, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, NFYC, YBX1, PRDX1, ZNF691, TMEM69, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, P3H1, ATPAF1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, HECTD3, PPCS, HYI, ZMYND12, RAD54L, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20) 0.448955589788487 159 0.0731296918839741 1.033546730204 8192 0.492954796359875 2 1 1 -7.06170298279488 LTS-012 NA NA NA NA LTS-012 chr1 47284448 47284563 116 * CYP4B1 NA 0 NA 0.592 1 NA NA NA NA NA LTS-012 chr1 47284564 47614724 330161 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0.435367552273644 12 0.0457551951016262 0.742783139180407 347 0.427742526960817 2 1 1 -6.77932177279727 LTS-012 chr1 47614725 47615016 292 * character(0) NA 0 NA 3.649 1 NA NA NA NA NA LTS-012 chr1 47615017 53732315 6117299 * c(MIR761, LOC100507564, LINC00853, PDZK1IP1, CDKN2C, FAF1, KTI12, OSBPL9, PODN, CPT2, ELAVL4, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, RNF11, C1orf185, GPX7, FAM159A, TRABD2B, SKINT1L, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, CMPK1, SPATA6, C1orf123, ECHDC2, RAB3B, SCP2, DMRTA2, STIL, SLC1A7, COA7, TAL1, LRP8, BEND5, ZYG11B, FOXD2-AS1, AGBL4, PRPF38A, BTF3L4, ZFYVE9) 0.426861467704397 53 0.126139330203125 0.996467493094239 4625 0.495758839505193 2 1 1 -6.89200578440973 LTS-012 chr1 53732316 53741406 9091 * LRP8 NA 0 NA 0.982103070325818 23 0.279595048783679 2 NA NA -5.7649739237044 LTS-012 chr1 53741407 53742342 936 * LRP8 NA 0 NA 1.573 1 NA NA NA NA NA LTS-012 chr1 53742343 53742589 247 * LRP8 0 1 NA 2.89928273841452 5 3.74558851183629 8 8 0 -5.76441013715399 LTS-012 chr1 53742590 55532742 1790153 * c(MROH7-TTC4, MIR4781, LRRC42, TCEANC2, GLIS1, SLC25A3P1, LEXM, DHCR24, DIO1, TMEM61, CDCP2, USP24, SSBP3, PCSK9, PARS2, ACOT11, FAM151A, MROH7, LDLRAD1, MRPL37, HSPB11, YIPF1, TTC22, NDC1, CYB5RL, DMRTB1, TTC4, LRP8, BSND, TMEM59) 0.337429529809687 68 0.0899672106400015 1.5262965551034 2091 0.864190745838557 3 2 1 -6.83567503167597 LTS-012 chr1 55532743 55537966 5224 * USP24 0.362 1 NA 1.21536364752114 52 0.285708493948515 3 3 0 -5.76442411501623 LTS-012 chr1 55537967 55623048 85082 * USP24 0.369023326246837 3 0.0413561764834871 1.2561745676462 284 0.500294764691441 3 2 1 -6.75600050525292 LTS-012 chr1 55623049 55624545 1497 * USP24 NA 0 NA 0.581 1 NA NA NA NA NA LTS-012 chr1 55624546 60341826 4717281 * c(LINC01135, LOC100507634, MIR4422, MIR4711, MYSM1, OMA1, DAB1, C1orf168, USP24, JUN, TACSTD2, HOOK1, FGGY, PRKAA2, HSD52, C8A, C8B, PLPP3) 0.414813133426362 35 0.07156777360298 0.92578830227523 1459 0.461945265285691 2 1 1 -6.773157632237 LTS-012 chr1 60341827 62739198 2397372 * c(PATJ, C1orf87, CYP2J2, KANK4, MGC34796, NFIA, HOOK1, L1TD1, TM2D1) 0.447226560174202 25 0.0404773599270835 1.13094075358825 892 0.602762642348901 2 1 1 -7.04177334157685 LTS-012 chr1 62739199 62739220 22 * KANK4 NA 0 NA 0.543 1 NA NA NA NA NA LTS-012 chr1 62739221 89647523 26908303 * c(ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, MIR3671, LINC01364, FPGT-TNNI3K, MIR4794, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, GBP4, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, UBE2U, CTBS, MGC27382, CTH, IL23R, KANK4, GADD45A, LINC00466, TCTEX1D1, SLC44A5, AK4, CLCA4, USP33, SLC35D1, ADGRL2, ITGB3BP, LPAR3, DDAH1, MCOLN2, COL24A1, NA NA NA NA NA NA NA NA NA LTS-012 ST6GALNAC3, NEGR1, ZZZ3, SERBP1, AK5, GBP1, GBP2, GBP3, SNORD45B, SNORD45A, FOXD3, ANGPTL3, GNG5, GTF2B, ALG6, LINC01140, ACADM, CYR61, IL12RB2, JAK1, MIGA1, GBP7, UOX, LEPR, C1orf141, MIR101-1, MIR186, LHX8, LINC01555, MSH4, ROR1, RBMXL1, TNNI3K, SH3GLB1, PDE4B, PGM1, PIN1P1, ZNHIT6, LEPROT, GIPC2, RAVER2, MCOLN3, LRRC40, DEPDC1, PRKACB, PKN2, GNG12, KYAT3, PTGER3, PTGFR, ODF2L, LRRC7, CACHD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 MIER1, DNASE2B, RABGGTB, RPE65, ADGRL4, LOC646626, SNORD45C, USP1, DLEU2L, TTLL7, WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, SGIP1, EFCAB7, ATG4C, LMO4, DOCK7, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, ZRANB2, CLCA3P, CLCA2, HS2ST1, DNAJC6) 0.421002899476703 231 0.0818572971100086 0.841932466944386 12333 0.587767538907572 2 1 1 -6.92667443036308 LTS-012 NA NA NA NA LTS-012 chr1 89647524 89647712 189 * GBP4 NA 0 NA 1.397 1 NA NA NA NA NA LTS-012 chr1 89647713 89650453 2741 * GBP4 NA 0 NA 1.91234285955787 43 0.568784231199433 5 NA NA -5.76441023845228 LTS-012 chr1 89650454 89650563 110 * GBP4 NA 0 NA 0.92 1 NA NA NA NA NA LTS-012 chr1 89650564 94027941 4377378 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GFI1, SNORA66, ZNF326, BTBD8, CCDC18, BARHL2, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, TMED5, FNBP1L, LRRC8D, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.431012555309834 37 0.092719474226836 0.798882467285929 2961 0.429756420597793 2 1 1 -6.92039283848334 LTS-012 chr1 94027942 94032886 4945 * BCAR3 NA 0 NA 1.141 1 NA NA NA NA NA LTS-012 chr1 94032887 95363049 1330163 * c(MIR760, LOC100129046, CNN3, SLC44A3, F3, ABCA4, GCLM, DNTTIP2, ABCD3, BCAR3, ARHGAP29) 0.433902368483049 29 0.0589525149147882 0.967707834554609 1077 0.515933333642041 2 1 1 -6.75229879894489 LTS-012 chr1 95363050 109154920 13791871 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, CNN3, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729970, LOC729987, VCAM1, NA NA NA NA NA NA NA NA NA LTS-012 CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.425635791697524 66 0.0597690992189545 0.798281225323341 3641 0.383347155108353 2 1 1 -7.42608564932888 LTS-012 NA NA NA NA LTS-012 chr1 109154921 109158865 3945 * FAM102B NA 0 NA 1.727 1 NA NA NA NA NA LTS-012 chr1 109158866 110162995 1004130 * c(HENMT1, ATXN7L2, C1orf194, FNDC7, CELSR2, WDR47, CLCC1, AKNAD1, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GPSM2, MYBPHL, MIR197, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, SCARNA2, STXBP3, TAF13, GPR61, PSRC1) 0.414843165603158 22 0.049368764333077 0.966799522010645 2498 0.5642036715385 2 1 1 -6.80077875208609 LTS-012 chr1 110162996 110294577 131582 * c(AMPD2, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, EPS8L3) 0.4 1 NA 0.858686529658384 497 0.384408152216821 2 2 0 -5.76546290986613 LTS-012 chr1 110294578 110768991 474414 * c(AHCYL1, CSF1, UBL4B, ALX3, KCNC4, SLC6A17, EPS8L3, STRIP1) 0.433896279235086 10 0.027471197037382 0.988997923604182 659 0.461188647452882 2 1 1 -6.75653195137056 LTS-012 chr1 110768992 110774765 5774 * KCNC4 NA 0 NA 0.564 1 NA NA NA NA NA LTS-012 chr1 110774766 112315343 1540578 * c(LINC01160, FAM212B-AS1, LAMTOR5-AS1, CEPT1, LAMTOR5, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, KCNA2, KCNA3, KCNA10, KCNC4, LOC440600, PGCP1, OVGP1, ATP5F1, LRIF1, FAM212B, RAP1A, CYMP, RBM15, WDR77, DENND2D, PROK1, SLC16A4, CD53) 0.436412515853062 43 0.0580194529565145 0.807903036593794 1748 0.372616995358213 2 1 1 -6.81294858856841 LTS-012 chr1 112315344 118170988 5855645 * c(MIR942, AP4B1-AS1, MIR320B1, MIR4256, TSPAN2, BCAS2, AP4B1, PHTF1, MAN1A2, MAB21L3, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, IGSF3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, ATP1A1, NGF, NHLH2, NRAS, TRIM33, RSBN1, FAM46C, ST7L, SLC22A15, CTTNBP2NL, OLFML3, PTGFRN, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, VTCN1, SIKE1, TRIM45, VANGL1, CAPZA1, CASQ2, TTF2, NA NA NA NA NA NA NA NA NA LTS-012 ATP1A1-AS1, CD2, CD101, CD58, LRIG2) 0.416166419156872 97 0.0654786959399248 0.947023233774428 5434 0.541437620518521 2 1 1 -6.79452525165807 LTS-012 NA NA NA NA LTS-012 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.566 1 NA NA NA NA NA LTS-012 chr1 118319311 118413273 93963 * GDAP2 NA 0 NA 0.471651998196755 69 0.194334543374327 1 NA NA -5.80503253527748 LTS-012 chr1 118413274 118419829 6556 * GDAP2 NA 0 NA 1.016 1 NA NA NA NA NA LTS-012 chr1 118419830 120164994 1745165 * c(WARS2, WDR3, HSD3BP4, SPAG17, HSD3B1, HSD3B2, HAO2, GDAP2, LINC00622, TBX15, ZNF697) 0.435703344715924 4 0.091346866393982 0.843934388247816 879 0.315389371016565 2 1 1 -6.77506186279958 LTS-012 chr1 120164995 120166332 1338 * ZNF697 0 1 NA 1.34169689531886 31 1.12429100239418 3 3 0 -5.76441417693155 LTS-012 chr1 120166333 120534160 367828 * c(ADAM30, PHGDH, HMGCS2, NBPF7, NOTCH2, REG4, ZNF697) 0.372332714919874 15 0.18400887659748 0.90435801688636 658 0.403583941749949 2 1 1 -6.79182270392532 LTS-012 chr1 120534161 120535367 1207 * NOTCH2 NA 0 NA 0.526 1 NA NA NA NA NA LTS-012 chr1 120535368 120538110 2743 * NOTCH2 0.257 1 NA 0.41553097009884 95 0.805405444557696 1 1 0 -5.7646266804438 LTS-012 chr1 120538111 120538323 213 * NOTCH2 NA 0 NA 0.798 1 NA NA NA NA NA LTS-012 chr1 120538324 120905120 366797 * c(NOTCH2, FAM72B) 0.314013503965408 11 0.0652663076103659 0.735243318245286 94 0.530650710560744 3 2 1 -7.23349090185679 LTS-012 chr1 120905121 121313547 408427 * c(SRGAP2D, FCGR1B, HIST2H2BA, EMBP1) NA 0 NA 0.64473273265536 103 0.336163481583971 1 NA NA -5.81095366144441 LTS-012 chr1 143912360 144013853 101494 * FAM72D 0.337 1 NA 0.599982671506793 7 0.545167776709065 1 1 0 -5.76556669310082 LTS-012 chr1 144013854 144680028 666175 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.348 1 NA 0.429514121775753 42 0.569648425511361 1 1 0 -5.84598712878963 LTS-012 chr1 144680029 144851495 171467 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.666 1 NA NA NA NA NA LTS-012 chr1 144851496 145136562 285067 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.360444745561287 71 0.0900330969772108 0.7929812993829 583 0.398853645567424 3 2 1 -6.93970576964744 LTS-012 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.112 1 NA NA NA NA NA LTS-012 chr1 145136925 145285310 148386 * c(NBPF10, NBPF20, NOTCH2NL) 0.305859729707187 16 0.0777564306022338 0.531298474370721 236 0.756252393915736 4 3 1 -6.95912790097486 LTS-012 chr1 145285311 145290585 5275 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 0.457649402949664 31 0.261753495627314 1 NA NA -5.76617770963453 LTS-012 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 1.381 1 NA NA NA NA NA LTS-012 chr1 145414668 145441620 26953 * c(NBPF10, NBPF20, TXNIP, HFE2) 0.491 1 NA 0.761035951230513 111 0.322577333546448 2 2 0 -5.76864416980496 LTS-012 chr1 145441621 147381399 1939779 * c(NBPF10, NBPF20, LINC00624, PIAS3, POLR3C, TXNIP, CD160, LIX1L, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, GJA5, GJA8, RNF115, ANKRD34A, ACP6, PDZK1, PRKAB2, BCL9, NBPF13P, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.44273481393071 43 0.0773117404077327 0.915044325968872 1927 0.464691054777432 2 1 1 -6.75079340047418 LTS-012 chr1 147381400 149760175 2378776 * c(FCGR1CP, MIR5087, FCGR1A, NBPF14, NBPF15, LINC01138, LOC388692, HIST2H2BF, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.492 1 NA 0.578006875211594 148 0.380930060961323 1 1 0 -5.77844859044977 LTS-012 chr1 149760176 149761605 1430 * c(FCGR1A, HIST2H2BF) NA 0 NA 1.34 1 NA NA NA NA NA LTS-012 chr1 149761606 152322913 2561308 * c(LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, FLG, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, NA NA NA NA NA NA NA NA NA LTS-012 PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.425169320263104 77 0.0957572795981357 1.00585456815031 6016 0.519378270553229 2 1 1 -6.80755083326185 LTS-012 NA NA NA NA LTS-012 chr1 152322914 152328971 6058 * FLG2 0.480653843515247 3 0.00655743852430201 0.473147121151984 109 0.169801375040608 2 1 1 -14.4442287399651 LTS-012 chr1 152328972 155447748 3118777 * c(MIR190B, C1orf68, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, EFNA1, EFNA3, EFNA4, LCE4A, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, LCE5A, C1orf43, CHTOP, LCE2B, GBA, GBAP1, SLC39A1, RUSC1-AS1, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, NA NA NA NA NA NA NA NA NA LTS-012 LCE3E, IL6R, ILF2, IVL, KCNN3, FLG2, C1orf189, LOR, SMCP, KPRP, LCE6A, MTX1, MUC1, NPR1, CRNN, ZBTB7B, PKLR, DPM3, CRCT1, UBE2Q1, ASH1L, LENEP, SLC50A1, PGLYRP4, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SPRR2F, SPRR2G, SPRR3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, LCE3D, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.437614922656341 137 0.0685374404454096 1.0164435665169 6760 0.535171128068643 2 1 1 -6.83931699644808 LTS-012 NA NA NA NA LTS-012 chr1 155447749 155642562 194814 * c(MSTO1, YY1AP1, ASH1L, ASH1L-AS1) 0.434833227337668 5 0.0702189433130405 0.72283790725644 302 0.37991903086271 2 1 1 -6.7734231284285 LTS-012 chr1 155642563 155644702 2140 * YY1AP1 NA 0 NA 1.797 1 NA NA NA NA NA LTS-012 chr1 155644703 155708463 63761 * c(YY1AP1, DAP3) 0.473550783083366 3 0.0349332697200439 1.07553794245297 128 0.717485816300244 2 1 1 -7.54161916177726 LTS-012 chr1 155708464 155716482 8019 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 0.175 1 NA NA NA NA NA LTS-012 chr1 155716483 155723146 6664 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.556154934812227 89 0.326388056118343 1 NA NA -5.76441015385921 LTS-012 chr1 155723147 155724062 916 * c(GON4L, YY1AP1) NA 0 NA 1.366 1 NA NA NA NA NA LTS-012 chr1 155724063 158326033 2601971 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, KIAA0907, SYT11, SMG5, LAMTOR2, HDGF, RXFP4, CYCSP52, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GON4L, GPATCH4, KIRREL, YY1AP1, PRCC, UBQLN4, RAB25, RHBG, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, SSR2, SCARNA4, SNORA80E, CCT3, MIR765, FCRL2, MRPL24, PAQR6, ISG20L2, NA NA NA NA NA NA NA NA NA LTS-012 FCRL5, FCRL4, TMEM79, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11) 0.436989323810785 129 0.0689541762020088 1.02044889322073 5270 0.481939020521398 2 1 1 -6.84736074309525 LTS-012 NA NA NA NA LTS-012 chr1 158326034 158326277 244 * CD1E NA 0 NA 0.503 1 NA NA NA NA NA LTS-012 chr1 158326278 159805641 1479364 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, CD1E, AIM2) 0.442826049860846 53 0.0737032550931148 0.807466294615056 1489 0.454600244173898 2 1 1 -6.79842618752758 LTS-012 chr1 159805642 161476490 1670849 * c(TSTD1, LINC01133, MIR5187, SLAMF6, KLHDC9, COPA, ITLN2, FCER1G, FCGR2A, NCSTN, ARHGAP30, CFAP126, CFAP45, USP21, C1orf204, APOA2, KCNJ9, KCNJ10, VSIG8, LY9, MPZ, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, PEX19, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, NA NA NA NA NA NA NA NA NA LTS-012 IGSF8, ADAMTS4, CD48, NR1I3) 0.423818606853223 86 0.0940406670479507 1.01508234660461 4139 0.520846235141727 2 1 1 -6.79110231549708 LTS-012 NA NA NA NA LTS-012 chr1 161476491 161479565 3075 * FCGR2A NA 0 NA 0.58 1 NA NA NA NA NA LTS-012 chr1 161479566 161594293 114728 * c(FCGR2A, FCGR3A, FCGR3B, HSPA6, HSPA7, FCGR2C) 0.397539271590199 19 0.087951109491687 0.653568906476571 352 0.310018725153191 2 1 1 -6.88582541293702 LTS-012 chr1 161594294 161594310 17 * FCGR3B NA 0 NA 0.942 1 NA NA NA NA NA LTS-012 chr1 161594311 168545864 6951554 * c(MIR921, MIR3658, LOC100505795, LOC100505918, MIR4654, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, FCGR2B, FCGR3B, ALDH9A1, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, RGS4, RXRG, XCL1, RPL31P11, UAP1, XCL2, MIR556, MIR557, UCK2, NUF2, FCRLA, ANKRD36BP1, NA NA NA NA NA NA NA NA NA LTS-012 RGS5, MAEL, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, NOS1AP) 0.421031458114775 100 0.0930532219818966 0.937628073443384 4409 0.461037498972251 2 1 1 -6.77581932281859 LTS-012 NA NA NA NA LTS-012 chr1 168545865 168545949 85 * XCL1 0.353 1 NA 0.861530623629129 3 0.204101282047255 2 2 0 -5.76441217713753 LTS-012 chr1 168545950 169256674 710725 * c(DPT, NME7, ATP1B1, XCL1, LINC00626) 0.438271051961775 2 0.0155563491861041 1.00656052324965 203 0.978506421867758 2 1 1 -6.89695851327104 LTS-012 chr1 169256675 169267766 11092 * NME7 NA 0 NA 0.71 1 NA NA NA NA NA LTS-012 chr1 169267767 174671433 5403667 * c(MIR1295A, MIR3119-1, MIR3120, MIR3119-2, LOC100506023, GAS5-AS1, DNM3OS, MIR1295B, SLC19A2, RC3H1, METTL11B, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, KLHL20, SLC9C2, LINC01142, NME7, ANKRD45, FASLG, FMO6P, SERPINC1, MYOC, SUCO, METTL13, PIGC, PRRX1, DARS2, C1orf112, SCYL3, CCDC181, GAS5, SNORD74, SELE, SELL, SELP, SNORD75, SNORD76, SNORD77, SNORD78, NA NA NA NA NA NA NA NA NA LTS-012 TOP1P1, TNFSF4, LOC730159, MROH9, ZBTB37, BLZF1, VAMP4, TNFSF18, CENPL, METTL18, GORAB, C1orf105, GPR52, PRDX6, RABGAP1L) 0.435327780090984 105 0.0472955925739712 0.842007090082397 4312 0.44897432324276 2 1 1 -6.80531817348362 LTS-012 NA NA NA NA LTS-012 chr1 174671434 174721375 49942 * RABGAP1L NA 0 NA 1.233 1 NA NA NA NA NA LTS-012 chr1 174721376 181776527 7055152 * c(GM140, RASAL2-AS1, MIR3121, LHX4-AS1, MIR4424, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, CACYBP, MR1, C1orf220, ASTN1, IER5, RALGPS2, MIR488, QSOX1, KIAA1614, BRINP2, PAPPA2, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, TNR, LOC730102, CACNA1E, NPHS2, TEX35, ACBD6, SEC16B, LHX4, ANGPTL1, XPR1, RASAL2, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.435609232133535 90 0.0830133940729182 0.980392165562085 5537 0.56218593092053 2 1 1 -6.83791545557367 LTS-012 chr1 181776528 182350908 574381 * c(ZNF648, GLUL) NA 0 NA 0.853557308067344 92 0.242632465876626 2 NA NA -5.77923495937916 LTS-012 chr1 182350909 182351233 325 * GLUL 0.29 1 NA 1.46345036365889 7 0.370291262451086 4 4 0 -5.76441844481987 LTS-012 chr1 182351234 185071712 2720479 * c(ARPC5, TSEN15, FAM129A, TEDDM1, DHX9, NMNAT2, COLGALT2, RGL1, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, RGS16, RNASEL, RNF2, EDEM3, NPL, C1orf21, SHCBP1L, RGS8, SMG7) 0.376715997265547 66 0.056902484777844 1.23095789177829 2872 0.532599180456698 3 2 1 -6.77912743497851 LTS-012 chr1 185071713 200378110 15306398 * c(MIR181A1HG, GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, CFHR3, OCLM, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, ZNF281, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, LINC00862, LHX9, PTGS2, PTPRC, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, CFHR5, TRMT1L, HMCN1, B3GALT2 NA NA NA NA NA NA NA NA NA LTS-012 ) 0.3781100196556 58 0.0676100881299448 1.00082268703939 4771 0.447243192238611 2 1 1 -7.56865597889517 LTS-012 NA NA NA NA LTS-012 chr1 200378111 207134024 6755914 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, ZNF281, PHLDA3, TMEM9, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, IL10, RPS10P7, KISS1, TMEM81, LAD1, NA NA NA NA NA NA NA NA NA LTS-012 NA, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PIGR, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, AVPR1B, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, FAM72A, LINC01136, CACNA1S, BTG2, NUAK2, DDX59, RASSF5, FCAMR, DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, SOX13, IKBKE, ZC3H11A, TMCC2, KIF14) 0.368720369996795 224 0.0800121207185724 1.3811703301612 10682 0.694798559204117 3 2 1 -6.83651751983588 LTS-012 NA NA NA NA LTS-012 chr1 207134025 207990870 856846 * c(CR1, CR1L, CR2, CD55, MIR29C, CD46, PFKFB2, YOD1, C4BPA, C4BPB, C1orf116, FCAMR) 0.35331859291534 37 0.106057246992554 1.17444243358203 1257 0.522139135834636 3 2 1 -6.74147166139475 LTS-012 chr1 207990871 207992346 1476 * LOC148696 NA 0 NA 2.322 1 NA NA NA NA NA LTS-012 chr1 207992347 209807961 1815615 * c(MIR4260, LOC148696, LAMB3, MIR205, PLXNA2, CAMK1G, MIR205HG, CD34) 0.371594259947087 26 0.0405960399736041 1.61291521331698 647 0.728661699651252 3 2 1 -6.9138140942314 LTS-012 chr1 209807962 209811247 3286 * LAMB3 NA 0 NA 1.006 1 NA NA NA NA NA LTS-012 chr1 209811248 225978154 16166907 * c(MIR320B2, MIR3122, MIR4742, LINC00538, LINC00210, BPNT1, CENPF, DUSP10, LYPLAL1, DNAH14, SPATA17, TATDN3, C1orf74, BROX, CNIH3, SPATA45, FAM71A, CCDC185, EPRS, ESRRG, FBXO28, SYT14, RAB3GAP2, INTS7, NSL1, RPS6KC1, RNU5F-1, DIEXF, FLVCR1, CNIH4, NENF, HLX, HSD11B1, RD3, IRF6, MIA3, KCNH1, KCNK2, CAPN8, LAMB3, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, ATF3, NEK2, NVL, G0S2, RRP15, KCTD3, NA NA NA NA NA NA NA NA NA LTS-012 DTL, MARC2, SUSD4, GPATCH2, TMEM206, PPP2R5A, BATF3, SLC30A10, IARS2, HHAT, ENAH, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, PTPN14, FLVCR1-AS1, LYPLAL1-AS1, MARC1, AIDA, SRP9, SNORA36B, AURKAPS1, SNORA16B, TGFB2, TLR5, TP53BP2, TRAF5, TGFB2-AS1, USH2A, SLC30A1, C1orf115, HHIPL2, VASH2, WDR26, TRAF3IP3, CAPN2, LINC00467, DISP1, DEGS1, TAF1A, ANGEL2, LPGAT1) 0.362786137913308 146 0.0970472034998059 1.24105999658826 9266 0.663373453446854 3 2 1 -6.7333254683978 LTS-012 NA NA NA NA LTS-012 chr1 225978155 231357275 5379121 * c(NA, MIR1182, MIR3620, MIR4666A, MIR5008, LEFTY1, SPHAR, CAPN9, SNAP47, CCSAP, MRPL55, HIST3H2BB, PARP1, LOC149373, RNF187, SDE2, AGT, IBA57, EPHX1, COG2, ABCB10, GALNT2, TAF5L, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, FAM89A, ZNF847P, TRIM67, H3F3AP4, TRIM17, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, ACBD3, ARV1, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, NA NA NA NA NA NA NA NA NA LTS-012 TTC13, PGBD5, TRIM11, HIST3H3, MIXL1, OBSCN, CDC42BPA, C1orf198, WNT3A, HIST3H2A, TMEM63A, URB2) 0.361539387269458 118 0.0830825047352057 1.38920755786003 5685 0.63538707996362 3 2 1 -6.83627163131089 LTS-012 NA NA NA NA LTS-012 chr1 231357276 231359479 2204 * TRIM67 NA 0 NA 0.994 1 NA NA NA NA NA LTS-012 chr1 231359480 243287822 11928343 * c(LOC100130331, LINC00582, LGALS8-AS1, MIR1537, LINC00184, TSNAX-DISC1, MIR3123, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, CHML, LYST, CHRM3, WDR64, C1orf131, EDARADD, SLC35F3, B3GALNT2, EXOC8, PLD5, FH, RBM34, OPN3, DISC2, DISC1, GNG4, LINC01139, IRF2BP2, KCNK1, COA6, LGALS8, MAP1LC3C, MTR, NID1, ARID4B, EGLN1, MAP10, HEATR1, ERO1B, FMN2, SIPA1L2, ZP4, RGS7, RYR2, GREM2, SNRPD2P2, MT1HL1, RPS7P5, NA NA NA NA NA NA NA NA NA LTS-012 SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, LINC01347, PCNX2, SPRTN, NTPCR, GNPAT, MLK4, KMO, ACTN2, EXO1, GGPS1, TOMM20, CEP170) 0.356742304620345 142 0.0978762142777627 1.23171647457052 6628 0.587666422071614 3 2 1 -6.73480158623165 LTS-012 NA NA NA NA LTS-012 chr1 243287823 243287827 5 * CEP170 NA 0 NA 0.943 1 NA NA NA NA NA LTS-012 chr1 243287828 243419568 131741 * c(SDCCAG8, CEP170) 0.331438775896056 5 0.0925834758474751 0.847612121534207 222 0.457426545820024 3 2 1 -6.84717807569312 LTS-012 chr1 243419569 243433381 13813 * SDCCAG8 NA 0 NA 1.455 1 NA NA NA NA NA LTS-012 chr1 243433382 248085309 4651928 * c(AKT3, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, NLRP3, COX20, OR2B11, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR14A16, NA, HNRNPU, LOC339529, OR6F1, OR2W3, OR2T8, C1orf229, OR11L1, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670) 0.369005495116073 74 0.0701970477233246 1.29381114022538 3135 0.772172145471616 3 2 1 -6.74980480951948 LTS-012 chr1 248085310 248097125 11816 * character(0) NA 0 NA 1.013 1 NA NA NA NA NA LTS-012 chr1 248097126 248605384 508259 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR2M1P, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2L5) 0.375093596723043 21 0.0722070765559852 0.93972073078677 406 0.547408666739778 3 2 1 -6.83275181106615 LTS-012 chr1 248605385 248616012 10628 * character(0) NA 0 NA 0.129 1 NA NA NA NA NA LTS-012 chr1 248616013 248814027 198015 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.331813953876728 3 0.108129551927306 0.684377885042865 247 0.415928701071593 3 2 1 -7.00875278004525 LTS-012 chr1 248814028 249105158 291131 * c(OR14I1, OR2T27, LYPD8, SH3BP5L) 0.369935371794689 3 0.143325968803052 1.22130276928834 51 0.746779679822689 3 2 1 -6.73546442424265 LTS-012 chr1 249105159 249214134 108976 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.36466311802253 297 0.852530193789188 3 NA NA -5.76525265417546 LTS-012 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.468 1 NA 0.86315685105301 85 0.289592369264341 2 2 0 -5.76638373249393 LTS-012 chr2 218387 283191 64805 * c(SH3YL1, FAM150B, ACP1) 0.443473537243489 9 0.0318634238238419 0.814389426001868 193 0.309231484786194 2 1 1 -6.83954984669334 LTS-012 chr2 283192 6980841 6697650 * c(LINC01304, RNASEH1-AS1, CMPK2, TMEM18, LINC01105, MYT1L, RNASEH1, FAM150B, LINC01115, LOC400940, LINC00487, TRAPPC12, SNTG2, ADI1, ALLC, RPS7, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11) 0.444278304179222 53 0.0771815664163715 1.13849059629033 1618 0.526180408505362 3 2 1 -7.46375749282078 LTS-012 chr2 6980842 6988428 7587 * CMPK2 NA 0 NA 0.776 1 NA NA NA NA NA LTS-012 chr2 6988429 20884381 13895953 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, FAM84A, GDF7, DDX1, E2F6, CYS1, LPIN1, PUM2, NTSR2, ATP6V1C2, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, RHOB, LINC00954, MATN3, MYCN, ODC1, NBAS, CPSF3, KIDINS220, NA NA NA NA NA NA NA NA NA LTS-012 WDR35, RDH14, RRM2, SDC1, HS1BP3, ADAM17, RAD51AP2, VSNL1, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, RNF144A) 0.444169885959962 145 0.0649231257760776 0.969928590336475 6154 0.490629655599065 2 1 1 -6.9615222908446 LTS-012 NA NA NA NA LTS-012 chr2 20884382 20884396 15 * character(0) NA 0 NA 0.765 1 NA NA NA NA NA LTS-012 chr2 20884397 21366191 481795 * c(APOB, LDAH) 0.454079941179085 2 0.0572756492761103 0.727025797163455 601 0.372605181232804 2 1 1 -6.92688739206059 LTS-012 chr2 23729986 27746322 4016337 * c(OST4, MIR1301, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, KRTCAP3, FKBP1B, MAPRE3, EFR3B, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, PFN4, FAM228B, KCNK3, KHK, KIF3C, MFSD2B, PTRHD1, MPV17, ITSN2, DNAJC27, ATRAID, SF3B6, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, NA NA NA NA NA NA NA NA NA LTS-012 AGBL5, FNDC4, FAM228A, DNAJC27-AS1, UCN, SLC30A3, CAD, CENPO, WDCP, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, DRC1, OTOF, TP53I3, SNX17) 0.412344769152627 85 0.128937706714852 1.14531447925614 6649 0.551777563865639 3 2 1 -6.87529136826628 LTS-012 NA NA NA NA LTS-012 chr2 27746323 27746419 97 * GCKR NA 0 NA 0.47 1 NA NA NA NA NA LTS-012 chr2 27746420 27887422 141003 * c(GPN1, SLC4A1AP, GCKR, CCDC121, C2orf16, ZNF512, SUPT7L) 0.436678046804916 15 0.0542151797404169 0.866866960006572 559 0.322749199653313 2 1 1 -6.74262819220604 LTS-012 chr2 27887423 32372309 4484887 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, LCLAT1, SNORD53, EHD3, C2orf71, CAPN14, MEMO1, YPEL5, PPP1CB, TRMT61B, RBKS, SPAST, SRD5A2, SNORD92, XDH, GALNT14, CLIP4, LBH, DPY30, CAPN13, MRPL33, BRE) 0.420838665290607 60 0.0907254877324657 1.0844873304671 3068 0.65967292450162 2 1 1 -6.95265629852435 LTS-012 chr2 32372310 46985923 14613614 * c(SLC8A1-AS1, LINC01126, ARHGEF33, LOC100271832, LOC100288911, CEBPZOS, MIR4765, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, PLEKHH2, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, OXER1, KCNG3, EPAS1, RHOQ, HAAO, PRKD3, GPATCH11, RASGRP3, QPCT, FAM98A, EML4, LINC00486, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, TMEM247, SULT6B1, C2orf91, LINC01121, LTBP1, CRIM1, DYNC2LI1, VIT, PIGF, HEATR5B, PPM1B, SRBD1, NA NA NA NA NA NA NA NA NA LTS-012 NDUFAF7, TTC27, SLC30A6, PRKCE, EIF2AK2, BIRC6, MTA3, NLRC4, THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, SPAST, ZFP36L2, STRN, MIR558, LOC728730, C1GALT1C1L, MORN2, CAMKMT, GEMIN6, THUMPD2, YIPF4, MAP4K3, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, CRIPT, PREPL, FEZ2, SOCS5) 0.442465543579568 122 0.0575606888012265 0.927730422700878 8236 0.486338640842578 2 1 1 -6.80020529310776 LTS-012 NA NA NA NA LTS-012 chr2 46985924 47043884 57961 * c(LINC01118, SOCS5) 0.455040778636078 3 0.00750555349946514 0.5490447407558 90 0.180562009641682 2 1 1 -10.4645490493771 LTS-012 chr2 47043885 47043898 14 * LINC01118 NA 0 NA 1.41 1 NA NA NA NA NA LTS-012 chr2 47043899 47691497 647599 * c(LINC01119, C2orf61, LINC01118, EPCAM, MSH2, TTC7A, MIR559, CALM2, MCFD2) 0.445313556780232 11 0.0831448899648844 1.171454043809 560 0.539492766464689 2 1 1 -6.84598664557079 LTS-012 chr2 47691498 47693747 2250 * MSH2 NA 0 NA 0.927 1 NA NA NA NA NA LTS-012 chr2 47693748 70903749 23210002 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR3682, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, GPR75, SNRNP27, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, ADD2, PPP1R21, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, EFEMP1, AAK1, CEP68, PSME4, EHBP1, FSHR, CNRIP1, GFPT1, NFU1, ERLEC1, BMP10, STON1-GTF2A1L, NA NA NA NA NA NA NA NA NA LTS-012 LGALSL, MSH6, ANXA4, FOXN2, LOC339803, C2orf74, LOC339807, PRORSD1P, TSPYL6, LHCGR, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, MIR216A, MIR217, MXD1, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, PCBP1, WDPCP, ASB3, PCYOX1, VPS54, PEX13, BCL11A, PLEK, ETAA1, AFTPH, C2orf42, FANCL, PPP3R1, FBXO48, CCDC88A, GKN1, KCNK12, PNO1, RPL23AP32, RTN4, PELI1, PPP4R3B, RAB1A, REL, RPS27A, GMCL1, LOC644838, PAPOLG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SLC1A4, SNRPG, SPTBN1, TGFA, TIA1, MEIS1-AS3, UGP2, VRK2, XPO1, FBXO11, FAM161A, ANTXR1, KIAA1841, FAM136A, PNPT1, NRXN1, USP34, SERTAD2, ACYP2, ARHGAP25) 0.434779616001565 168 0.0718330027871671 0.921293450336345 10421 0.534581502250495 2 1 1 -6.76820262230028 LTS-012 NA NA NA NA LTS-012 chr2 70903750 71220905 317156 * c(TEX261, ADD2, CLEC4F, VAX2, FIGLA, CD207, ATP6V1B1, ANKRD53) 0.433440688910323 17 0.0323089406675432 1.21594372264454 485 0.554891176859263 4 2 2 -6.78121141304154 LTS-012 chr2 71220906 71221768 863 * TEX261 NA 0 NA 0.888 1 NA NA NA NA NA LTS-012 chr2 71221769 71650643 428875 * c(MPHOSPH10, TEX261, ZNF638, PAIP2B, NAGK, OR7E91P, MCEE) 0.456538105909796 13 0.0630893749435611 0.873176257608248 545 0.563627328472193 2 1 1 -6.83659679491107 LTS-012 chr2 71650644 73635941 1985298 * c(SMYD5, CCT7, FBXO41, EGR4, EMX1, EXOC6B, RAB11FIP5, ZNF638, NOTO, CYP26B1, SPR, ALMS1, DYSF, PRADC1, SFXN5) 0.464946522041071 36 0.0332505161673744 1.08936810190941 1697 0.506073182127589 2 1 1 -7.49566013043806 LTS-012 chr2 73635942 73646281 10340 * ALMS1 NA 0 NA 0.491 1 NA NA NA NA NA LTS-012 chr2 73646282 73762168 115887 * ALMS1 0.464206853916888 3 0.0212837966537927 0.579436926576275 214 0.206949136475544 2 1 1 -8.26774173694614 LTS-012 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 1.095 1 NA NA NA NA NA LTS-012 chr2 73777367 87400212 13622846 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, NA NA NA NA NA NA NA NA NA LTS-012 REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.443171885667468 160 0.0547608853082967 0.970147708649114 7064 0.473892325885747 2 1 1 -6.97841527502547 LTS-012 NA NA NA NA LTS-012 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.037 1 NA NA NA NA NA LTS-012 chr2 87404257 87424429 20173 * RMND5A NA 0 NA 0.176834402179083 60 0.16980438313269 0 NA NA -5.78073366531557 LTS-012 chr2 87424430 88272934 848505 * c(CYTOR, RMND5A) 0.412414019818199 7 0.0747121460132471 0.601142110912434 71 0.54693902676072 2 1 1 -7.02861423491056 LTS-012 chr2 88272935 89345714 1072780 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, EIF2AK3) 0.443355645326764 16 0.0564576168466222 0.895125713588365 651 0.384041715062555 2 1 1 -6.76556879297958 LTS-012 chr2 89345715 89345769 55 * character(0) NA 0 NA 0.551 1 NA NA NA NA NA LTS-012 chr2 89345770 89597177 251408 * character(0) 0.387 1 NA 0.489542660954809 90 0.292532687546872 1 1 0 -5.79328226506374 LTS-012 chr2 89597178 89890617 293440 * character(0) NA 0 NA 1.195 1 NA NA NA NA NA LTS-012 chr2 89890618 90024874 134257 * character(0) 0.433040137206166 3 0.0747150141091691 1.03623352087296 49 1.01130991031131 2 1 1 -6.73553179932133 LTS-012 chr2 90024875 90249415 224541 * character(0) 0.321 1 NA 0.848788758316372 85 0.993586592364556 2 2 0 -5.76483788392565 LTS-012 chr2 90249416 91955375 1705960 * LOC654342 0.270432022319262 16 0.102026610091028 1.04091712323958 100 0.585362573991798 4 3 1 -7.22336989891884 LTS-012 chr2 91955376 91955470 95 * character(0) NA 0 NA 1.55653920464135 3 0.228053356329902 4 NA NA -5.76441037514242 LTS-012 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.454 1 NA 4.275 1 NA NA NA NA NA LTS-012 chr2 95537246 95947085 409840 * c(TEKT4, PROM2, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.302153853652891 11 0.0906918859756383 1.13383905569737 391 0.890921500459854 4 3 1 -6.79065738530299 LTS-012 chr2 95947086 96012907 65822 * c(PROM2, KCNIP3) 0.464 1 NA 1.23319201403126 85 0.522941191106364 3 3 0 -5.76441308563445 LTS-012 chr2 96012908 96049905 36998 * KCNIP3 NA 0 NA 1.3523727447449 35 0.581856824919913 3 NA NA -5.76491478154748 LTS-012 chr2 96049906 96050022 117 * KCNIP3 NA 0 NA 0.726 1 NA NA NA NA NA LTS-012 chr2 96050023 98409287 2359265 * c(MIR3127, ACTR1B, ARID5A, TRIM43, COX5B, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, KCNIP3, ANKRD36, ASTL, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, TRIM43B, LINC01125, FAHD2CP, ZAP70, LMAN2L, FER1L5, NEURL3, CIAO1) 0.403741841719583 50 0.0730549136483185 0.885653797129688 2985 0.423805867660224 2 1 1 -6.81202507639214 LTS-012 chr2 98409288 109513459 11104172 * c(LOC100287010, LINC01158, MIR4772, MIR5696, TXNDC9, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, LINC01102, C2orf15, SULT1C2P1, LONRF2, CCDC138, VWA3B, CREG2, FHL2, TMEM131, LYG2, UNC50, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, IL1R1, INPP4A, SLC9A4, AFF3, LIMS1, SULT1C3, NPAS2, COA5, MRPL30, REV1, LIPT1, POU3F3, CNOT11, RANBP2, SLC5A7, RPL31, MRPS9, RGPD3, NA NA NA NA NA NA NA NA NA LTS-012 SLC9A2, SULT1C2, SNORD89, RGPD4-AS1, RFX8, IL1R2, PDCL3, C2orf49, UXS1, TSGA10, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.409060692326149 145 0.0902129016522641 0.770293936389438 6298 0.417576636238493 2 1 1 -7.54877333228941 LTS-012 NA NA NA NA LTS-012 chr2 109513460 110260129 746670 * c(SH3RF3-AS1, MIR4265, MIR4266, EDAR, SH3RF3) NA 0 NA 1.20728655048383 176 0.45980038017643 3 NA NA -5.76581497980954 LTS-012 chr2 110260130 112523992 2263863 * c(BCL2L11, MIR4267, LOC100507334, LINC01106, SEPT10, LINC00116, SH3RF3, NPHP1, MIR4435-2HG, ACOXL, SOWAHC, BUB1, MALL) 0.330404093710263 5 0.18634591490022 0.807194382871443 829 0.339962848445737 2 1 1 -7.03007844544694 LTS-012 chr2 112523993 112579053 55061 * ANAPC1 0.351840081397546 3 0.0981902914413301 0.5318207191062 126 0.328019781536671 3 2 1 -6.9500276733574 LTS-012 chr2 112579054 112582505 3452 * ANAPC1 NA 0 NA 0.964 1 NA NA NA NA NA LTS-012 chr2 112582506 118771566 6189061 * c(LOC100499194, MIR4782, ACTR3, MERTK, RABL2A, RPL23AP7, FBLN7, TTL, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, DPP10-AS1, FLJ42351, LINC01191, CCDC93, IL36G, DPP10, ANAPC1, FAM138B, PAX8-AS1, SLC20A1, RGPD8, PAX8, SLC35F5, POLR1B, CHCHD5, ZC3H8, IL1F10, DDX11L2, TMEM87B, DDX18) 0.403678115494554 80 0.0728360001056648 0.766950095997447 3076 0.370232805223192 2 1 1 -7.41696147725195 LTS-012 chr2 118771567 119591566 820000 * c(INSIG2, CCDC93) 0.274 1 NA 0.70324090852885 67 0.392565812036323 1 1 0 -5.93422988172766 LTS-012 chr2 119591567 119592006 440 * character(0) NA 0 NA 0.740498944026068 8 0.220785893377013 2 NA NA -5.76461030625368 LTS-012 chr2 119592007 120069377 477371 * c(C2orf76, C1QL2, EN1, STEAP3, MARCO) 0.412521666369006 7 0.0872647858940985 1.05698746209869 302 0.641385866606625 2 1 1 -6.77602386070038 LTS-012 chr2 120069378 120074980 5603 * C2orf76 NA 0 NA 0.578 1 NA NA NA NA NA LTS-012 chr2 120074981 120980969 905989 * c(C2orf76, TMEM37, DBI, CFAP221, EPB41L5, PTPN4, SCTR, TMEM185B, TMEM177) 0.325071215909019 8 0.204456727870297 0.747552719729058 921 0.348109311538182 2 1 1 -7.03412619012706 LTS-012 chr2 120980970 120997569 16600 * TMEM185B NA 0 NA 0.984 1 NA NA NA NA NA LTS-012 chr2 120997570 130737777 9740208 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, RALB, TSN, SAP130, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, HS6ST1) 0.424094777684672 41 0.0887252610659417 1.03761559674081 3508 0.537191888157194 2 1 1 -7.13340654335486 LTS-012 chr2 130737778 130909608 171831 * c(RAB6C-AS1, MED15P9, FAR2P1, SMPD4, POTEF, RAB6C, CCDC74B) 0.485 1 NA 0.627679994243992 169 0.579789688881523 1 1 0 -5.76884305090107 LTS-012 chr2 130909609 132120172 1210564 * c(CYP4F30P, FAR2P2, TUBA3E, FAM168B, WTH3DI, AMER3, PTPN18, GPR148, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, MZT2B, CCDC115, IMP4) 0.4208101535787 4 0.240649122167524 1.00566014164178 1042 0.459439858133564 2 1 1 -6.7780202645295 LTS-012 chr2 132120173 132179876 59704 * c(WTH3DI, LINC01120) NA 0 NA 0.421772265345954 51 0.189561074021841 1 NA NA -5.84010189436197 LTS-012 chr2 132179877 132181174 1298 * character(0) NA 0 NA 0.973 1 NA NA NA NA NA LTS-012 chr2 132181175 133542545 1361371 * c(MIR663B, MIR4784, TUBA3D, LYPD1, LOC150776, GPR39, C2orf27A, NCKAP5, NOC2LP2, C2orf27B, ANKRD30BL, MZT2A, CCDC74A) 0.377641835054929 38 0.0852730865441286 1.1063487008506 614 0.778719875471472 3 2 1 -6.77317519176668 LTS-012 chr2 133542546 133542574 29 * NCKAP5 0.46 1 NA 1.03273685742274 3 0.230087664452776 2 2 0 -5.76441636955297 LTS-012 chr2 133542575 135694526 2151952 * c(CCNT2-AS1, MIR3679, ACMSD, NCKAP5, MGAT5, TMEM163, CCNT2) 0.435601442278085 8 0.0471863706108932 0.943953480774407 501 0.365670473887425 2 1 1 -6.76525305825166 LTS-012 chr2 135694527 135696481 1955 * CCNT2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-012 chr2 135696482 149544435 13847954 * c(ZEB2-AS1, LOC100507600, NXPH2, DARS, RAB3GAP1, UBXN4, R3HDM1, EPC2, HNMT, SPOPL, LCT, TEX41, MIR128-1, MCM6, ORC4, LRP1B, MBD5, ARHGAP15, YY1P2, PABPC1P2, CXCR4, GTDC1, MAP3K19, THSD7B, ZRANB3, KYNU, CCNT2, ACVR2A, ZEB2) 0.441209428975333 58 0.0610802829719795 0.81556943430713 3470 0.404764782508986 2 1 1 -7.18615205896219 LTS-012 chr2 149544436 162017472 12473037 * c(TANK, LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, STAM2, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, EPC2, ARL5A, MMADHC, GPD2, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, RIF1, CCDC148-AS1, PRPF40A, RPRM, ERMN, RBMS1, MARCH7, TNFAIP6, CACNB4, PKP4, TANC1, ACVR1, NMI, DAPL1, CYTIP, CD302) 0.429227859330882 87 0.0872757538148835 0.907178675746751 5586 0.421773525030099 2 1 1 -6.73777208462416 LTS-012 chr2 162017473 162017714 242 * TANK NA 0 NA 0.458 1 NA NA NA NA NA LTS-012 chr2 162017715 164461098 2443384 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.4528416896067 3 0.0546015872785154 0.763203504706304 1154 0.431088291894336 2 1 1 -7.03550474621163 LTS-012 chr2 164461099 164461198 100 * character(0) NA 0 NA 0.858 1 NA NA NA NA NA LTS-012 chr2 164461199 165944731 1483533 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN3A) 0.442076259679531 12 0.0321996612065745 0.985831486818428 640 0.547353745782206 2 1 1 -6.83980287195145 LTS-012 chr2 165944732 168103891 2159160 * c(LOC100506124, TTC21B-AS1, XIRP2, GALNT3, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3) 0.43651670431722 25 0.0423553617227697 0.796703069261953 1741 0.572820880403145 2 1 1 -6.80211967137057 LTS-012 chr2 168103892 176972303 8868412 * c(MIR933, SP9, NA, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, RAPGEF4, CHN1, CHRNA1, NOSTRIN, XIRP2, BBS5, CCDC173, UBR3, ATF2, MYO3B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, CERS6, METAP1D, GAD1, GORASP2, STK39, LINC01305, METTL5, OLA1, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, SP5, LRP2, LINC01124, PHOSPHO2, PDK1, ZAK, ATP5G3, SPC25, G6PC2, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, NA NA NA NA NA NA NA NA NA LTS-012 DCAF17, LNPK, CDCA7, HAT1, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, PPIG, CIR1, TLK1) 0.439223158637451 149 0.0712923554498178 0.937494498622913 6483 0.51065229104265 2 1 1 -6.78088263818091 LTS-012 NA NA NA NA LTS-012 chr2 176972304 176972521 218 * HOXD11 NA 0 NA 2.922 1 NA NA NA NA NA LTS-012 chr2 176972522 177038245 65724 * c(HOXD-AS2, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HAGLR, MIR10B) 0.464164882512908 7 0.0307501451796805 1.22275174965887 321 0.759324335636644 4 2 2 -7.39323681465424 LTS-012 chr2 177038246 179367290 2329045 * c(LOC100130691, MIR1246, MIR548N, MIR3128, MTX2, OSBPL6, RBM45, TTC30B, HNRNPA3, HOXD1, LINC01116, HAGLR, NFE2L2, DFNB59, PDE11A, FKBP7, PLEKHA3, AGPS, PRKRA, TTC30A) 0.307955624056341 10 0.155195969306193 0.845941672089671 1305 0.398461031883509 2 1 1 -7.11467302815416 LTS-012 chr2 179367291 179368398 1108 * c(MIR548N, PLEKHA3) NA 0 NA 0.543 1 NA NA NA NA NA LTS-012 chr2 179368399 179655588 287190 * c(MIR548N, TTN-AS1, PLEKHA3, TTN) 0.444622518580914 58 0.049128201242156 0.694461234888846 3101 0.23400160561821 2 1 1 -6.98489790766116 LTS-012 chr2 179655589 179656704 1116 * TTN NA 0 NA 0.997 1 NA NA NA NA NA LTS-012 chr2 179656705 199011736 19355032 * c(LOC100130452, NEMP2, MIR1258, MIR1245A, MIR3129, MIR3606, HSPE1-MOB4, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, RFTN2, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, SF3B1, TMEFF2, FRZB, MOB4, HIBCH, MSTN, GLS, CCDC150, CCDC141, SLC40A1, HSPD1, HSPE1, INPP1, ITGA4, ITGAV, CERKL, FSIP2, C2orf66, MYO1B, NAB1, NEUROD1, PDE1A, GULP1, PLCL1, PMS1, DNAJC10, NA NA NA NA NA NA NA NA NA LTS-012 ASNSD1, MFSD6, ZC3H15, DNAH7, SLC39A10, HECW2, CWC22, PCGEM1, OSGEPL1, NABP1, BOLL, SSFA2, STAT1, STAT4, MIR561, TFPI, TTN, PGAP1, COQ10B, WDR75, C2orf88, SDPR, SESTD1, ANKRD44, ZNF804A, STK17B, MARS2, GTF3C3, ORMDL1) 0.444791805031611 131 0.0507655486306857 0.832096415088215 9172 0.408482511212093 2 1 1 -7.15818715269038 LTS-012 NA NA NA NA LTS-012 chr2 199011737 207170043 8158307 * c(SNORD11B, GCSHP3, LOC100507140, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, EEF1B2, C2orf69, SATB2, SPATS2L, SNORD51, GPR1, FAM126B, ICOS, AOX1, AOX2P, FTCDNL1, NDUFB3, NDUFS1, ORC2, NOP58, PLCL1, PPIL3, INO80D, STRADB, WDR12, CYP20A1, ALS2, ZDBF2, MPP4, NIF3L1, SNORA41, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, NA NA NA NA NA NA NA NA NA LTS-012 SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, NRP2, CFLAR, CD28, BZW1) 0.426020330884754 95 0.0885214786571633 0.948998100848272 6161 0.554451599183382 2 1 1 -6.78319313339037 LTS-012 NA NA NA NA LTS-012 chr2 207170044 207176412 6369 * ZDBF2 NA 0 NA 0.63313298397014 135 0.176059199049434 1 NA NA -5.7664580723461 LTS-012 chr2 207176413 207176485 73 * ZDBF2 NA 0 NA 1.195 1 NA NA NA NA NA LTS-012 chr2 207176486 217123138 9946653 * c(LOC100130451, MIR548F2, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, LANCL1, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, METTL21A, CCNYL1, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, UNC80, CPS1-IT1, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, MREG, PECR, PTH2R, MARCH4, ZDBF2, BARD1, RPE, LINC00607, NA NA NA NA NA NA NA NA NA LTS-012 XRCC5, FZD5, SPAG16, KLF7, ADAM23, TMEM169) 0.444918681032351 74 0.0441351463577582 0.896413977234395 5402 0.509393178579237 2 1 1 -6.79925619255802 LTS-012 NA NA NA NA LTS-012 chr2 217123139 217364539 241401 * c(SMARCAL1, MARCH4, RPL37A) 0.448382976454887 6 0.0536274183603873 1.06013808784609 224 0.413966945016512 2 1 1 -6.82467890388306 LTS-012 chr2 217364540 217366995 2456 * RPL37A 0.454 1 NA 1.45701965594804 19 1.35126459505456 4 4 0 -5.7644154227766 LTS-012 chr2 217366996 219305513 1938518 * c(ARPC2, AAMP, GPBAR1, PNKD, RUFY4, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, CATIP, MIR26B, CTDSP1, TMBIM1, SLC11A1, TNP1, TNS1, DIRC3, VIL1) 0.453596784653709 28 0.0360569068154845 1.10912093503866 1634 0.762009641254357 2 1 1 -7.06430773495385 LTS-012 chr2 219305514 219609907 304394 * c(STK36, USP37, BCS1L, RNF25, VIL1, ZNF142, PLCD4, CNOT9, TTLL4) 0.452271540743184 22 0.0430308708273008 0.91582433924934 992 0.40264181134136 2 1 1 -6.8876034630501 LTS-012 chr2 219609908 224461948 4852041 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, CRYBA2, CCDC140, SLC23A3, LINC00608, CYP27A1, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CFAP65, CNPPD1, GMPPA, DNAJB2, IHH, INHA, RESP18, MIR153-1, MIR375, PAX3, PRKAG3, FEV, ANKZF1, ASIC4, PTPRN, SLC4A3, TUBA4A, WNT6, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, TUBA4B, WNT10A, STK16, CDK5R2, TTLL4 NA NA NA NA NA NA NA NA NA LTS-012 ) 0.445881778704641 55 0.0716093357719297 1.12556904025018 4155 0.537966508669688 2 1 1 -7.23694177109147 LTS-012 NA NA NA NA LTS-012 chr2 224461949 233632766 9170818 * c(MIR1471, MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, CHRND, CHRNG, COL4A3, COL4A4, DIS3L2, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, SNORD82, GIGYF2, AGFG1, HTR2B, SP110, ECEL1P2, SPATA3-AS1, IRS1, KCNJ13, NCL, NPPC, PDE6D, CAB39, SERPINE2, PID1, DOCK10, C2orf83, MFF, PSMD1, PTMA, WDFY1, NYAP2, SNORD20, CCL20, LOC646736, NA NA NA NA NA NA NA NA NA LTS-012 PRSS56, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCG2, FAM124B, TM4SF20, ARMC9, EFHD1, SPHKAP, SLC19A3, ITM2C, RHBDD1, CUL3, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.429920740716061 126 0.0769276390564123 0.936479298034386 6177 0.479875926130338 2 1 1 -6.77554761003312 LTS-012 NA NA NA NA LTS-012 chr2 233632767 233722349 89583 * c(GIGYF2, KCNJ13) 0 1 NA 0.784496509785035 181 0.419875208009235 2 2 0 -5.76994143733496 LTS-012 chr2 233722350 233834893 112544 * c(NGEF, GIGYF2, C2orf82) 0.406353436022855 2 0.0700035713374682 1.07161448245088 138 0.455841717108919 2 1 1 -6.81191879703021 LTS-012 chr2 233834894 234386245 551352 * c(NGEF, INPP5D, NEU2, ATG16L1, USP40, SAG, SCARNA6, SCARNA5, DGKD) 0.169390353389915 25 0.07413842908146 0.6868570467495 794 0.35282182308532 1 1 0 -6.91177777657426 LTS-012 chr2 234386246 234389741 3496 * USP40 NA 0 NA 0.394 1 NA NA NA NA NA LTS-012 chr2 234389742 234677074 287333 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.253783099885109 9 0.0468457871934903 0.464458870415015 436 0.212490113955795 1 1 0 -7.71076835821177 LTS-012 chr2 234677075 234678064 990 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) NA 0 NA 0.689 1 NA NA NA NA NA LTS-012 chr2 234678065 239000650 4322586 * c(UBE2F-SCLY, ARL4C, RAMP1, COPS8, AGAP1, COL6A3, UBE2F, MSL3P1, SH3BP4, GBX2, RBM44, ASB18, PRLH, SCLY, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, ACKR3, RAB17, SPP2, TRPM8, MLPH, IQCA1, LRRFIP1) 0.180895056131042 80 0.0650887891628316 0.636551575403298 2557 0.380131526888885 1 1 0 -7.06330031130677 LTS-012 chr2 239000651 241390516 2389866 * c(PP14571, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, TWIST2, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, TRAF3IP1, GPC1, ESPNL, KLHL30, OR6B2, FLJ43879, NDUFA10, SCLY, ASB1, HES6, LOC643387, PRR21, ILKAP, MGC16025, PER2, HDAC4) 0.18065091587151 53 0.0516240667426899 0.697175371343435 1797 0.367106596600965 1 1 0 -7.26715427000005 LTS-012 chr2 241390517 241392434 1918 * c(PP14571, GPC1) 0 1 NA 0.973109369546154 9 1.21049801505184 2 2 0 -5.76441524645393 LTS-012 chr2 241392435 242815736 1423302 * c(PP14571, BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, MIR149, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.166351621204303 84 0.0666957656659998 0.70725161163185 3428 0.454344260948657 1 1 0 -7.06026585737252 LTS-012 chr2 242815737 243037218 221482 * LOC728323 NA 0 NA 0.696967324759419 43 0.401722397718064 1 NA NA -5.80580145814841 LTS-012 chr3 239351 361508 122158 * CHL1 0.25 1 NA 1.36266407886572 11 0.304613615167567 3 3 0 -5.77157779434868 LTS-012 chr3 361509 7782944 7421436 * c(EGOT, BHLHE40-AS1, MIR4790, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, GRM7, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.39263604491748 40 0.0530496562254745 0.918481737866911 1932 0.42752486373886 2 1 1 -7.0321943456415 LTS-012 chr3 7782945 7783043 99 * GRM7 NA 0 NA 0.982 1 NA NA NA NA NA LTS-012 chr3 7783044 8920203 1137160 * c(LMCD1-AS1, GRM7, LINC00312, LMCD1, OXTR, SSUH2, RAD18, CAV3) 0.320281038875275 25 0.0813233668757019 1.31180600840899 373 0.702877612138799 3 2 1 -6.88378856611954 LTS-012 chr3 8920204 8944114 23911 * RAD18 NA 0 NA 0.675248519203835 84 0.234020186104325 1 NA NA -5.7741839293152 LTS-012 chr3 8944115 15563197 6619083 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, MIR4270, FGD5-AS1, SH3BP5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, METTL6, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, FANCD2, FBLN2, CAND2, NUP210, CAPN7, MKRN2, THUMPD3, HACL1, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, HRH1, COL6A4P1, TPRXL, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, CCDC174, GHRL, PPARG, NA NA NA NA NA NA NA NA NA LTS-012 SETD5, TMEM40, EMC3, BRK1, RAD18, RAF1, RPL32, CIDEC, SEC13, RBSN, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, SH3BP5, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.380070727127402 150 0.0629169602938464 1.10060612231897 7464 0.543509646279026 3 2 1 -6.97047477584476 LTS-012 NA NA NA NA LTS-012 chr3 15563198 15602243 39046 * c(HACL1, COLQ) NA 0 NA 0.683 1 NA NA NA NA NA LTS-012 chr3 15602244 28562614 12960371 * c(MIR3714, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, AZI2, THRB-AS1, BTD, MIR563, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, EOMES, KAT2B, OXNAD1, SLC4A7, TBC1D5, NR1D2) 0.391222948282703 96 0.0887613737461191 0.872068006123989 3888 0.475527967282969 2 1 1 -6.8750790885761 LTS-012 chr3 28562615 28565969 3355 * ZCWPW2 NA 0 NA 1.236 1 NA NA NA NA NA LTS-012 chr3 28565970 39225310 10659341 * c(ACVR2B-AS1, PDCD6IP, OSBPL10-AS1, CTDSPL, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, TRIM71, ZCWPW2, CMTM8, XIRP1, TTC21A, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, WDR48, SCN5A, SCN10A, TMPPE, LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, DCLK3, LRRFIP2, ACVR2B, SLC22A14, NA NA NA NA NA NA NA NA NA LTS-012 SLC22A13, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.373934518649363 107 0.0747343664816637 1.03463651657163 6576 0.533881332307983 3 2 1 -7.40263537046695 LTS-012 NA NA NA NA LTS-012 chr3 39225311 39225424 114 * XIRP1 NA 0 NA 0.569 1 NA NA NA NA NA LTS-012 chr3 39225425 41281388 2055964 * c(EIF1B, CCR8, CTNNB1, CX3CR1, XIRP1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, RPL14, ENTPD3) 0.359346359276155 8 0.060518592184551 0.887426030589448 1060 0.66986819647955 3 2 1 -7.02469243302894 LTS-012 chr3 41281389 41291081 9693 * c(CTNNB1, ULK4) 0.401 1 NA 1.07861584697456 25 0.55130047161235 3 3 0 -5.76477685352437 LTS-012 chr3 41291082 42958668 1667587 * c(CCDC13-AS1, ACKR2, LYZL4, KLHL40, CCDC13, CYP8B1, TRAK1, HIGD1A, ZNF662, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.426003793107216 55 0.0548826234513471 0.972472971028981 1599 0.462157583342781 2 1 1 -6.7663652649522 LTS-012 chr3 42958669 46714908 3756240 * c(LOC100132146, KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, LIMD1, CCRL2, ZNF502 NA NA NA NA NA NA NA NA NA LTS-012 ) 0.434322751435777 111 0.0868553326655814 0.822094073807058 4428 0.412792767808844 2 1 1 -6.83498251166258 LTS-012 NA NA NA NA LTS-012 chr3 46714909 47042794 327886 * c(PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.437391826228745 22 0.0427241225696988 1.10697028219388 724 0.516902861131337 2 1 1 -6.78224944317649 LTS-012 chr3 47042795 63849417 16806623 * c(SNORD19B, LINC00696, NRADDP, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, PTPRG-AS1, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, SYNPR-AS1, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, C3orf49, NA NA NA NA NA NA NA NA NA LTS-012 SNTN, SYNPR, LSMEM2, ASB14, DAG1, DNASE1L3, DOCK3, DUSP7, CELSR3, C3orf67, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, FHIT, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, FLNB, NBEAL2, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, LINC00698, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, SPATA12, IMPDH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, FEZF2, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, C3orf14, PTPRG, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, THOC7, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 CADPS, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.414966962146728 220 0.0971931974030059 0.890217161106207 20424 0.420301283516862 2 1 1 -6.75165331585353 LTS-012 NA NA NA NA LTS-012 chr3 63849418 63849458 41 * THOC7 NA 0 NA 1.79 1 NA NA NA NA NA LTS-012 chr3 63849459 67048835 3199377 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, PRICKLE2, LRIG1, ADAMTS9, ATXN7, MIR548A2, THOC7, KBTBD8, MAGI1, PSMD6) 0.459040236808244 4 0.0297097066068763 1.00164062103542 1163 0.43511461695425 2 1 1 -7.37107878557574 LTS-012 chr3 67048836 67049346 511 * KBTBD8 NA 0 NA 0.392 1 NA NA NA NA NA LTS-012 chr3 67049347 69024826 1975480 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.438152031560842 11 0.0593292814414909 0.641445710563747 345 0.308357397233658 2 1 1 -7.89822948737489 LTS-012 chr3 69024827 70014477 989651 * c(MIR3136, ARL6IP5, FRMD4B, EOGT, MITF, LMOD3, TMF1, UBA3) 0.420894138782367 12 0.0615435298029457 0.828740593431457 811 0.392061425204245 2 1 1 -6.7712113048439 LTS-012 chr3 70014478 70014586 109 * MITF NA 0 NA 1.009 1 NA NA NA NA NA LTS-012 chr3 70014587 74410985 4396399 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.452478492712319 31 0.0868562772816439 0.996188780580004 1239 0.53986923999913 2 1 1 -6.86889894387635 LTS-012 chr3 74410986 75679988 1269003 * c(MIR1324, CNTN3, FAM86DP) 0.334 1 NA 0.906849184441197 65 0.459914340895713 2 2 0 -5.76478300616015 LTS-012 chr3 75679989 75787679 107691 * c(ZNF717, MIR1324) 0.365449552285868 142 0.0867594440320958 1.09342088466296 291 0.537000128449458 3 2 1 -6.7381512716952 LTS-012 chr3 75787680 75787684 5 * ZNF717 NA 0 NA 0.742 1 NA NA NA NA NA LTS-012 chr3 75787685 75790822 3138 * ZNF717 0.358261979847308 31 0.0835093195494545 0.768493901084239 71 0.319270618704269 3 2 1 -6.73784511335949 LTS-012 chr3 75790823 75986622 195800 * ZNF717 0.432 1 NA 0.688360897471955 9 0.262904344666353 1 1 0 -5.84023165441715 LTS-012 chr3 75986623 88041023 12054401 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ROBO1, ROBO2) 0.421789202776871 22 0.0644068003454288 0.848836450028925 1076 0.417508268923114 2 1 1 -6.87026671434531 LTS-012 chr3 88041024 90283666 2242643 * c(EPHA3, C3orf38, HTR1F, ZNF654, CGGBP1) NA 0 NA 0.765772800995611 569 0.34094889565266 2 NA NA -6.04334510737382 LTS-012 chr3 93591838 94225007 633170 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.448 1 NA 0.882157137821076 363 0.462211951097375 2 2 0 -5.76495019389219 LTS-012 chr3 94225008 97744518 3519511 * c(MTHFD2P1, CRYBG3, GABRR3, LINC00879, EPHA6, ARL6, MINA) 0.348311141641294 9 0.0864847449618203 0.759728626317822 637 0.340156803501091 2 1 1 -7.69688099401721 LTS-012 chr3 97744519 98225641 481123 * c(GABRR3, OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.447700273150107 9 0.0474959062563408 0.548329870231196 223 0.211481982814291 2 1 1 -8.07513947150207 LTS-012 chr3 98225642 101312147 3086506 * c(MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, DCBLD2, FAM172BP, CPOX, ABI3BP, GPR15, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, PCNP, SENP7, TMEM30CP, CMSS1, ADGRG7, TOMM70) 0.4332188284617 52 0.0514318473034339 0.815943979666573 2053 0.419297317308462 2 1 1 -6.8295940941423 LTS-012 chr3 101312148 101578848 266701 * c(ZBTB11-AS1, ZBTB11, PDCL3P4, PCNP, RPL24, NFKBIZ, CEP97, NXPE3) NA 0 NA 0.834144211539335 580 0.344400380613374 2 NA NA -5.77166813609959 LTS-012 chr3 101578849 102157365 578517 * c(ZPLD1, LOC152225, NFKBIZ) 0.348 1 NA 1.41974144376981 33 1.06918225974127 4 4 0 -5.76787686823155 LTS-012 chr3 102157366 111839836 9682471 * c(LINC00882, PVRL3-AS1, CD96, HHLA2, ZPLD1, LINC00635, DPPA2, ALCAM, MYH15, PLCXD2, GCSAM, NECTIN3, MORC1, LINC00636, TAGLN3, DUBR, TMPRSS7, FLJ22763, LINC01205, TRAT1, IFT57, DPPA4, ABHD10, BBX, KIAA1524, LINC00488, MIR548A3, MIR567, ZBED2, C3orf52, RETNLB, CCDC54, CBLB, PHLDB2, CD47, GUCA1C, DZIP3) 0.340355414491577 47 0.114892259388285 1.1820560642729 2918 0.556933206300394 3 2 1 -6.7930638032669 LTS-012 chr3 111839837 112968757 1128921 * c(CD200R1, CCDC80, BTLA, GCSAM, NEPRO, SLC9C1, GTPBP8, CD200R1L, CD200, SLC35A5, ATG3, C3orf52, BOC) 0.357855043559176 21 0.0852129545259852 1.0476738441644 1117 0.575972972905496 3 2 1 -6.79058838921994 LTS-012 chr3 112968758 113005920 37163 * c(CFAP44, BOC) 0.254 1 NA 1.81988300809605 141 0.741786083461412 5 5 0 -5.76452862993216 LTS-012 chr3 113005921 122599659 9593739 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, SPICE1, IGSF11, C3orf30, PARP15, GPR156, DRD3, TIGIT, USF3, ZDHHC23, GAP43, ZBTB20, FAM162A, GOLGB1, TUSC7, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, LSAMP, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, TMEM39A, CFAP44, EAF2, POGLUT1, ARHGAP31, NA NA NA NA NA NA NA NA NA LTS-012 CCDC191, POPDC2, SLC15A2, MIR568, UPK1B, ZNF80, HSPBAP1, QTRT2, NAA50, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, BOC, CD80, CD86, STXBP5L, IQCB1) 0.347673003739739 144 0.0914913663391668 1.21043646139697 6971 0.698031519384812 3 2 1 -6.75190939091783 LTS-012 NA NA NA NA LTS-012 chr3 122599660 122599663 4 * DIRC2 NA 0 NA 1.519 1 NA NA NA NA NA LTS-012 chr3 122599664 123689119 1089456 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, ROPN1, CCDC14, DIRC2) 0.336325110393205 32 0.115936022401679 1.52362557456877 1223 0.837987959318779 3 2 1 -6.79952861779343 LTS-012 chr3 123689120 123694239 5120 * ROPN1 NA 0 NA 0.329 1 NA NA NA NA NA LTS-012 chr3 123694240 123699253 5014 * ROPN1 0.454 1 NA 0.658352038950852 66 0.380919372743719 1 1 0 -5.76499498203068 LTS-012 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 1.563 1 NA NA NA NA NA LTS-012 chr3 123699426 125690962 1991537 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.34303301898369 32 0.0608198606011917 1.35202462927522 1592 0.597048391237829 3 2 1 -6.81004067357131 LTS-012 chr3 125690963 125725579 34617 * c(ROPN1B, SLC41A3) 0.360137272966631 3 0.0660782364575004 0.690724983476144 83 0.433456315007956 3 2 1 -6.77059933047656 LTS-012 chr3 125725580 129696289 3970710 * c(TMCC1-AS1, ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, RPL32P3, H1FOO, C3orf22, DNAJB8, CHST13, KBTBD12, COPG1, TMCC1, PLXND1, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, H1FX-AS1, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, TXNRD3NB, LOC653712, SNORA7B, TRH, CNBP, RAB7A, ZXDC, EFCC1, ABTB1, NA NA NA NA NA NA NA NA NA LTS-012 CHCHD6, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.352823087125698 119 0.0542052982366965 1.44876034793018 4106 0.666498444430476 3 2 1 -6.87509045091908 LTS-012 NA NA NA NA LTS-012 chr3 129696290 132413798 2717509 * c(NPHP3-ACAD11, MIR5704, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, DNAJC13, COL6A5, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, ACKR4, ACPP, ALG1L2, COL6A4P2, SNORA58, TRH, FAM86HP, NEK11, UBA5, ACAD11) 0.347849127205894 50 0.0755765566718102 1.16239471437049 2233 0.532185400485019 3 2 1 -6.77415989399075 LTS-012 chr3 132413799 132413875 77 * NPHP3 NA 0 NA 1.153 1 NA NA NA NA NA LTS-012 chr3 132413876 140401953 7988078 * c(MIR4788, STAG1, TOPBP1, PISRT1, DZIP1L, EPHB1, MRAS, ANAPC13, ARMC8, NPHP3, TRIM42, KY, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, RAB6B, PIK3CB, IL20RB, MSL2, FAIM, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, BPESC1, RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, TF, PRR23A, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, BFSP2, COPB2) 0.336736075114659 68 0.106644654385689 1.32823265731903 4478 0.643109050974061 3 2 1 -6.81954667801163 LTS-012 chr3 140401954 143296258 2894305 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, TRIM42, PAQR9, ATP1B3, PLS1, XRN1, ATR, SLC25A36, RASA2, TFDP2, TRPC1, SPSB4, PXYLP1, CHST2, RNF7) 0.325675283903411 36 0.0776988488403214 1.21301475512496 2692 0.606126232215434 3 2 1 -6.85611933940825 LTS-012 chr3 143296259 143692018 395760 * c(C3orf58, SLC9A9) 0.368 1 NA 1.15055244267998 73 0.354582272398866 3 3 0 -5.77470226652683 LTS-012 chr3 143692019 175455194 31763176 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, CP, CPA3, CPB1, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, ECT2, RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, NAALADL2, NA NA NA NA NA NA NA NA NA LTS-012 WWTR1, TIPARP, ARHGEF26, GHSR, GPR160, SERP1, GOLIM4, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, CLDN11, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PLD1, PLOD2, PLSCR1, P2RY13, GPR87, PRKCI, MYNN, EIF5A2, SUCNR1, LXN, CCNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PLSCR2, PLSCR4, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SSR3, SCARNA7, MIR551B, MIR569, TERC, SEC62, TM4SF4, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, LRRC31, PHC3, ARL14, SPATA16, EIF2A, ZIC4, HPS3, ACTRT3, GFM1, B3GALNT1, TNFSF10, GMPS, SLC33A1, EGFEM1P, TSC22D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 P2RY14) 0.361766663430652 238 0.0800756419155126 1.1823645209773 12110 0.651753144524737 3 2 1 -6.82901595687374 LTS-012 NA NA NA NA LTS-012 chr3 175455195 182991261 7536067 * c(LINC00578, LINC01014, KCNMB2, DNAJC19, TTC14, MCF2L2, ATP11B, NAALADL2, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, MFN1, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, FXR1, B3GNT5, ACTL6A, USP13) 0.431832957351001 54 0.0819944199666073 0.860933865803594 3081 0.533849570444891 2 1 1 -6.76084187382284 LTS-012 chr3 182991262 182994543 3282 * MCF2L2 NA 0 NA 1.861 1 NA NA NA NA NA LTS-012 chr3 182994544 183696321 701778 * c(LINC00888, ABCC5, MCF2L2, KLHL24, PARL, YEATS2, MAP6D1, KLHL6) 0.357493510823821 18 0.192949288945503 1.02592955283897 802 0.609110568802942 3 2 1 -6.77328774983373 LTS-012 chr3 183696322 183696402 81 * ABCC5 0.439 1 NA 1.29386259469311 3 0.462640609256617 3 3 0 -5.76441055911946 LTS-012 chr3 183696403 186257446 2561044 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, CRYGS, DGKG, HTR3C, DVL3, EHHADH, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, VPS8, LOC253573, HTR3E, C3orf70, EHHADH-AS1, NMRAL1P1, POLR2H, ABCF3, PSMD2, SENP2, MAGEF1, TRA2B, IGF2BP2-AS1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.430896291546543 93 0.100466696153492 1.04359926084129 3936 0.522607072931082 2 1 1 -6.85807913478947 LTS-012 chr3 186257447 186262053 4607 * CRYGS NA 0 NA 0.545 1 NA NA NA NA NA LTS-012 chr3 186262054 195426484 9164431 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, CLDN16, RPL39L, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, AHSG, EIF4A2, FGF12, ACAP2, UTS2B, FETUB, GP5, TPRG1, HRG, HES1, LPP-AS2, RTP2, OSTN, ATP13A5, APOD, IL1RAP, KNG1, FLJ42393, LINC00884, LPP, OPA1, DNAJB11, PPP1R2, TBCCD1, P3H2, NA NA NA NA NA NA NA NA NA LTS-012 LSG1, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, LOC647323, ST6GAL1, SST, SNORA81, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, TP63, CLDN1, TMEM44, ADIPOQ) 0.431905323833778 153 0.0626991069998278 0.941793327037121 5030 0.583517105063211 2 1 1 -6.77044432773069 LTS-012 NA NA NA NA LTS-012 chr3 195426485 195447708 21224 * character(0) NA 0 NA 1.911 1 NA NA NA NA NA LTS-012 chr3 195447709 195515600 67892 * c(MUC20, MUC4) 0.337910830830096 22 0.0958412851961614 1.60140011002776 230 0.772644684353015 6 4 2 -6.74828648950072 LTS-012 chr3 195515601 197770513 2254913 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.414289296212862 78 0.111831940653746 0.960023856625199 3216 0.49100955181629 2 1 1 -6.77032444497453 LTS-012 chr4 53174 53360 187 * c(ZNF595, ZNF718) 0.078 1 NA 1.15218025071775 5 0.783455933668257 3 3 0 -5.76441108954637 LTS-012 chr4 53361 6642520 6589160 * c(MIR943, LOC100129917, LOC100130872, LOC100133461, TMED11P, STX18-AS1, MIR378D1, MIR4800, HTT-AS, LINC01587, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, EVC2, OTOP1, CRMP1, CTBP1, ADRA2C, ZNF595, JAKMIP1, FAM53A, DGKQ, ZBTB49, ZNF721, EVC, FGFR3, MAN2B2, ZNF718, GAK, NSG1, CRIPAK, LOC285484, DOK7, LINC00955, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, FAM86EP, POLN, NA NA NA NA NA NA NA NA NA LTS-012 LETM1, C4orf48, CFAP99, LRPAP1, MSX1, MYL5, PDE6B, ATP5I, STX18, FGFRL1, CYTL1, PIGG, PPP2R2C, STK32B, LYAR, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WFS1, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, TMEM128, NOP14, FAM193A, CTBP1-AS2, TMEM129, MRFAP1) 0.442178958862728 242 0.0733466043864434 1.09637001548938 8193 0.555980994861104 2 1 1 -7.22124870847932 LTS-012 NA NA NA NA LTS-012 chr4 6642521 7461836 819316 * c(LOC100129931, MIR4274, MIR4798, MRFAP1L1, CCDC96, BLOC1S4, TBC1D14, SORCS2, S100P, FLJ36777, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.456704907692232 20 0.0398719991446312 0.918223417326855 782 0.398570722844042 2 1 1 -6.98906216560737 LTS-012 chr4 7461837 9783710 2321874 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SH3TC1, SORCS2, AFAP1, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, ACOX3, ABLIM2, AFAP1-AS1, CPZ, HTRA3) 0.456960859300858 45 0.0748891908695167 1.18280794710749 1296 0.492090815424742 2 1 1 -7.21742480085664 LTS-012 chr4 9783711 9783831 121 * DRD5 NA 0 NA 0.823 1 NA NA NA NA NA LTS-012 chr4 9783832 11397622 1613791 * c(MIR3138, CLNK, DRD5, SLC2A9, MIR572, ZNF518B, WDR1) 0.456517555702231 9 0.0259652545615182 0.928309463672106 642 0.409185943751469 2 1 1 -7.30093466987642 LTS-012 chr4 11397623 11399752 2130 * character(0) 0.427 1 NA 1.01063922376061 43 0.244637558203398 2 2 0 -5.76471004400193 LTS-012 chr4 11399753 17635572 6235820 * c(MIR5091, MIR548AX, C1QTNF7, CPEB2, LINC01085, TAPT1, TAPT1-AS1, BOD1L1, FBXL5, FAM184B, LINC01097, LINC01096, FAM200B, CPEB2-AS1, LAP3, CC2D2A, NKX3-2, QDPR, CLRN2, BST1, MED28, FGFBP2, PROM1, LDB2, RAB28, CD38, HS3ST1, FGFBP1) 0.428848235104706 35 0.0846407931528658 0.953219350825326 2136 0.671789425797247 2 1 1 -6.76292250335539 LTS-012 chr4 17635573 17636588 1016 * FAM184B NA 0 NA 1.668 1 NA NA NA NA NA LTS-012 chr4 17636589 17805039 168451 * c(FAM184B, DCAF16) NA 0 NA 1.42584210593482 149 0.572353058030146 4 NA NA -5.76765580102549 LTS-012 chr4 17805040 17805120 81 * DCAF16 NA 0 NA 1.047 1 NA NA NA NA NA LTS-012 chr4 17805121 41747030 23941910 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, SLC34A2, PTTG2, PPARGC1A, LIAS, ARAP2, PACRGL, KLB, DHX15, ADGRA3, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, LCORL, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, LOC344967, RBPJ, KCNIP4-IT1, SMIM20, RHOH, DTHD1, LOC401127, MIR218-1, PCDH7, KLHL5, SEPSECS, KLF3, RBM47, DCAF16, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, NA NA NA NA NA NA NA NA NA LTS-012 NWD2, STIM2, WDR19, GBA3, RFC1, RPL9, NCAPG, SOD3, MIR573, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, KCNIP4, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1, SLIT2) 0.439017636762744 169 0.051970802242358 0.905046333059017 7054 0.561041616772109 2 1 1 -6.75339055641576 LTS-012 NA NA NA NA LTS-012 chr4 41747031 41747129 99 * PHOX2B NA 0 NA 0.995 1 NA NA NA NA NA LTS-012 chr4 41747130 41749732 2603 * PHOX2B 0.434 1 NA 2.23015426487006 38 1.17310642553564 6 6 0 -5.76441036440094 LTS-012 chr4 41749733 41750422 690 * PHOX2B NA 0 NA 0.796 1 NA NA NA NA NA LTS-012 chr4 41750423 48588742 6838320 * c(ATP8A1, SLC30A9, CORIN, CNGA1, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, PHOX2B) 0.409716864630348 84 0.0891584483695328 0.825369739567098 3595 0.389653562005889 2 1 1 -6.94919029550712 LTS-012 chr4 48588743 49064107 475365 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.801010283456057 261 0.467413287040342 2 NA NA -5.78130617807199 LTS-012 chr4 52709193 52888499 179307 * c(DCUN1D4, LRRC66, SGCB) 0.364 1 NA 0.916451573702919 249 0.594523299122832 2 2 0 -5.76454069303994 LTS-012 chr4 52888500 57176989 4288490 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, NMU, SPATA18, PDCL2, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, DANCR, KIAA1211, LOC644145, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1, CLOCK, CEP135) 0.430647654833673 45 0.0819975486206629 0.939765021242216 2064 0.426711644346323 2 1 1 -6.76258716972191 LTS-012 chr4 57176990 57179319 2330 * KIAA1211 NA 0 NA 2.247 1 NA NA NA NA NA LTS-012 chr4 57179320 57189687 10368 * KIAA1211 0.421 1 NA 1.45358795278441 70 0.685413374538212 4 4 0 -5.76450205443043 LTS-012 chr4 57189688 57190308 621 * KIAA1211 NA 0 NA 0.741 1 NA NA NA NA NA LTS-012 chr4 57190309 68904714 11714406 * c(EPHA5-AS1, THEGL, CENPC, PAICS, ARL9, AASDH, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, LOC401134, POLR2B, PPAT, UBA6-AS1, UBA6, KIAA1211, REST, TMPRSS11GP, SPINK2, SRP72, NOA1, HOPX, TMPRSS11D) 0.432173812170067 55 0.0865295846723479 0.851878272515825 2308 0.419649245345778 2 1 1 -6.84079832213413 LTS-012 chr4 68904715 68928468 23754 * c(TMPRSS11F, SYT14P1, UBA6-AS1, LOC550113) 0.47524970946843 6 0.016741166825125 0.5188117701755 96 0.227240065258686 2 1 1 -9.50260543273912 LTS-012 chr4 68928469 69363297 434829 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.425779927978542 19 0.110962745974278 0.900966931368747 370 0.422832034102443 2 1 1 -6.73399240631698 LTS-012 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.196 1 NA NA NA NA NA LTS-012 chr4 69402959 69512322 109364 * UGT2B17 NA 0 NA 0.221879895516838 39 0.4897519628906 0 NA NA -5.7646474652469 LTS-012 chr4 69512323 69512415 93 * character(0) NA 0 NA 4.072 1 NA NA NA NA NA LTS-012 chr4 69512416 71255614 1743199 * c(CSN1S2BP, UGT2B11, SMR3B, UGT2A1, CSN1S1, CSN2, CSN3, FDCSP, SMR3A, SULT1B1, CSN1S2AP, HTN1, HTN3, PRR27, UGT2B28, ODAM, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7, CABS1) 0.397614560587715 21 0.13991259176119 0.733072525324661 839 0.518743172465616 2 1 1 -6.92073254034588 LTS-012 chr4 71255615 71255630 16 * SMR3B NA 0 NA 0.807 1 NA NA NA NA NA LTS-012 chr4 71255631 119431144 48175514 * c(SNHG8, FAM47E, MIR1243, MIR1973, THAP9-AS1, MIR3684, LINC01094, LINC01088, LINC00989, LOC100506746, LOC100507053, GIMD1, SEC24B-AS1, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, ENAM, STPG2-AS1, FAM13A, CDS1, SEC24B, CXCL13, PDLIM5, CENPE, RRH, HPSE, SMR3B, NPFFR2, PPBPP2, CCNI, HELQ, CYP2U1, DDIT4L, PCAT4, ANTXR2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, LIN54, NA NA NA NA NA NA NA NA NA LTS-012 C4orf32, C4orf36, TRAM1L1, SLC9B2, SLC9B1, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, SGMS2, AFM, AFP, DMP1, DSPP, EGF, EIF4E, ENPEP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, METAP1, CNOT6L, C4orf22, EPGN, NPNT, LOC256880, AMBN, PARM1, RCHY1, ANKRD17, GC, NAP1L5, PPA2, DAPP1, GK2, DKK2, NAAA, COQ2, HPGDS, RPL34-AS1, FAM13A-AS1, GPRIN3, COX18, STPG2, ANK2, GRID2, CXCL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 CXCL2, CXCL3, GRSF1, H2AFZ, HADH, ANXA3, HNRNPD, IBSP, CCDC158, CFI, SOWAHB, LRIT3, SLC10A6, HSD17B13, JCHAIN, CXCL8, PCNAP1, CXCL10, AREG, AMTN, CCSER1, WDFY3-AS2, MANBA, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MIR302B, MTTP, MUC7, ATOH1, NFKB1, NKX6-1, CISD2, MRPS18C, COPS4, HSD17B11, LEF1, HERC5, PLAC8, LARP7, PDHA2, EMCN, PF4, PF4V1, PITX2, PKD2, NUDT9, NUP54, GAR1, PPEF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PPBP, TET2, ARHGEF38, HERC6, MCUB, BANK1, SDAD1, PPP3CA, ZGRF1, AP1AR, BMP2K, SEPT11, PRKG2, MAPK10, BDH2, SMARCAD1, MEPE, PRDM8, UTP3, INTS12, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, OSTC, RAP1GDS1, RPL34, CXCL6, CXCL11, CXCL5, NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, NDST4, ETNPPL, MRPL1, BMP3, BMPR1B, SNCA, SPP1, SNORA24, BTC, TACR3, MIR575, MIR577, LOC728040, UBE2D3, UGT8, ELOVL6, ARSJ, THAP9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 GSTCD, SCD5, DNAJB14, FRAS1, ALPK1, CXXC4, PLA2G12A, CAMK2D, ARHGAP24, CASP6, SPARCL1, C4orf17, FAM175A, COL25A1, NAA11, GPAT3, PRSS12, USO1, UNC5C, LAMTOR3, SLC4A4, HERC3, STBD1, CDKL2, FLJ20021, CCNG2, PAPSS1, AIMP1, MOB1B, TIFA, NDST3, TRMT10A, TBCK, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.439735941851249 468 0.0660210474862146 0.877119150821954 22998 0.492220706260934 2 1 1 -6.80887000151786 LTS-012 NA NA NA NA LTS-012 chr4 119431145 119476651 45507 * CEP170P1 NA 0 NA 0.388671652518364 149 0.260152168073299 1 NA NA -5.81596660167584 LTS-012 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.574 1 NA NA NA NA NA LTS-012 chr4 119476981 126408785 6931805 * c(PP12613, SPRY1, PRDM5, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, SYNPO2, FABP2, FGF2, LINC01091, ANXA5, IL2, LINC01061, C4orf3, MAD2L1, MYOZ2, EXOSC9, USP53, BBS7, ANKRD50, METTL14, IL21, LOC645513, TRPC3, CETN4P, NDNF, FAT4, TNIP3, QRFPR, KIAA1109, PDE5A, CCNA2, SEC24D) 0.44096108162749 81 0.0592258337443725 0.789931215827814 3451 0.789921905505528 2 1 1 -6.85987100285371 LTS-012 chr4 126408786 126411047 2262 * FAT4 NA 0 NA 1.936 1 NA NA NA NA NA LTS-012 chr4 126411048 146046333 19635286 * c(SCOC-AS1, MIR2054, LINC00499, ANAPC10, PGRMC2, CLGN, PLK4, SCLT1, C4orf33, PABPC4L, MGAT4D, FREM3, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, GYPA, GYPB, GYPE, IL15, MGST2, GUSBP5, NDUFC1, PCDH18, LARP1B, MAML3, RNF150, PCDH10, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, HHIP-AS1, UCP1, FAT4, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, USP38, SMARCA5, MGARP, NA NA NA NA NA NA NA NA NA LTS-012 INPP4B) 0.415486143781158 96 0.101734016374659 0.896084215458123 5227 0.530729397046233 2 1 1 -6.74564942953463 LTS-012 NA NA NA NA LTS-012 chr4 146046334 146048544 2211 * ABCE1 NA 0 NA 0.571 1 NA NA NA NA NA LTS-012 chr4 146048545 146058708 10164 * c(OTUD4, ABCE1) 0.444433591159855 3 0.011 0.615063303823653 128 0.219369172085362 2 1 1 -7.61976773508685 LTS-012 chr4 146058709 146058720 12 * OTUD4 NA 0 NA 0.784 1 NA NA NA NA NA LTS-012 chr4 146058721 153567789 7509069 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TMEM154, PRSS48, SMAD1, NR3C2, GATB, DKFZP434I0714, POU4F2, OTUD4, FBXW7, TMEM184C, RPS3A, C4orf51, FAM160A1, ARHGAP10, TTC29, SLC10A7, SNORD73A, PRMT9, LRBA) 0.411687444950221 31 0.088784891672217 1.02501737098371 2747 0.477938058804724 2 1 1 -7.08743662388801 LTS-012 chr4 153567790 156750959 3183170 * c(RBM46, TIGD4, TMEM154, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, RNF175, GUCY1A3, GUCY1B3, ANXA2P1, NPY2R, ASIC5, PLRG1, DCHS2, SFRP2, TLR2, MAP9, MND1, FHDC1, LRAT) 0.424572413234438 56 0.0514806198562063 0.919618493023934 2332 0.446573396834768 2 1 1 -6.74572387071176 LTS-012 chr4 156750960 156784896 33937 * ASIC5 NA 0 NA 1.00025230652649 47 0.432741217296303 2 NA NA -5.76568303189534 LTS-012 chr4 156784897 156787309 2413 * ASIC5 NA 0 NA 0.591 1 NA NA NA NA NA LTS-012 chr4 156787310 156874849 87540 * c(CTSO, ASIC5, TDO2) 0.169 1 NA 0.56337034054402 145 0.244802287492756 1 1 0 -5.76454004430472 LTS-012 chr4 156874850 190878661 34003812 * c(CLDN24, MIR1305, MIR4276, MIR3945, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, ZFP42, SPATA4, ENPP6, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, AGA, C4orf46, TMEM192, RWDD4, PRIMPOL, TRIML2, ETFDH, F11, ACSL1, FAT1, PALLD, ANP32C, FRG1, CCDC110, FAM149A, FBXO8, GK3P, PDLIM3, GLRB, GPM6A, CYP4V2, F11-AS1, NA NA NA NA NA NA NA NA NA LTS-012 LINC01098, GRIA2, SLC25A4, HMGB2, HPGD, LOC339975, TRIML1, LOC340017, ANKRD37, ING2, IRF2, KLKB1, LOC389247, TRIM61, HELT, LINC01060, FAM92A1P2, C4orf47, GALNTL6, MTNR1A, NEK1, NPY1R, NPY5R, SPOCK3, AADAT, FAM198B, GALNT7, CLDN22, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, UFSP2, DDX60, CDKN2AIP, TENM3, LRP2BP, PDGFC, FSTL5, STOX2, CFAP97, FNIP2, SH3RF1, RXFP1, SPCS3, TRAPPC11, MSMO1, SLED1, FLJ38576, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 MIR578, TLL1, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, TKTL2, SORBS2, CBR4, SAP30, LOC90768, DDX60L, NAF1, HAND2, RAPGEF2, MFAP3L) 0.179209435157224 222 0.0689360457737003 0.591831900470424 10143 0.343223670549647 1 1 0 -7.35092210949017 LTS-012 NA NA NA NA LTS-012 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.733849479359062 46 0.776615791392123 2 NA NA -5.76856349605205 LTS-012 chr5 140347 163266 22920 * PLEKHG4B 0.345 1 NA 1.54822173429124 75 0.660289002518478 4 4 0 -5.76442306807409 LTS-012 chr5 163267 678184 514918 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.343078547848282 21 0.0521237995179791 1.48338793702131 1064 0.744063224976526 3 2 1 -6.82060530910401 LTS-012 chr5 678185 748191 70007 * TPPP NA 0 NA 0.720048655678111 50 0.543950026216019 2 NA NA -5.77130308781089 LTS-012 chr5 748192 840867 92676 * ZDHHC11 0.369438122998413 14 0.0896979363208529 1.2502117306614 146 0.785736149209027 3 2 1 -6.73843973092997 LTS-012 chr5 840868 843710 2843 * ZDHHC11 NA 0 NA 3.466 1 NA NA NA NA NA LTS-012 chr5 843711 4930223 4086513 * c(MIR4277, LOC100506688, MIR4457, MIR4635, SLC12A7, C5orf38, IRX2, LINC01019, SLC6A19, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, BRD9, TERT, SDHAP3, LOC728613, IRX1, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.327943281104246 48 0.107760650112952 1.7207579873884 1627 1.05909340789582 4 3 1 -6.84671314039645 LTS-012 chr5 4930224 5140394 210171 * LINC01020 NA 0 NA 1.016 1 NA NA NA NA NA LTS-012 chr5 5140395 7743787 2603393 * c(MIR4278, MIR4454, ADCY2, PAPD7, UBE2QL1, ADAMTS16, ICE1, LINC01018, FLJ33360, LOC442132, NSUN2, SRD5A1, MED10) 0.342350408040279 36 0.101624378402597 1.33665551349065 968 0.616751039890362 3 2 1 -6.77665623837845 LTS-012 chr5 7743788 7866967 123180 * c(ADCY2, C5orf49, FASTKD3) 0.325 1 NA 1.32132702753035 211 0.589914313420997 3 3 0 -5.76529383054832 LTS-012 chr5 7866968 9036359 1169392 * c(MIR4458HG, MIR4458, MTRR, LOC729506, FASTKD3, SEMA5A) 0.43397394881038 6 0.0584240247386866 1.2653732705199 180 0.465176795015328 4 2 2 -6.89123611628887 LTS-012 chr5 9036360 9036385 26 * SEMA5A NA 0 NA 1.001 1 NA NA NA NA NA LTS-012 chr5 9036386 34880378 25843993 * c(SNORD123, LOC100130744, CDH6, MIR4279, SNHG18, ROPN1L-AS1, MIR4637, MIR4636, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, SUB1, C1QTNF3, FAM173B, CMBL, CTNND2, TTC23L, DAP, DNAH5, CCT5, PDZD2, FBXL7, AMACR, RAI14, LOC285692, LOC285696, DROSHA, LOC340107, LOC340113, LOC401177, LINC01194, MARCH11, MYO10, NPR3, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, C5orf22, ANKH, PRDM9, GOLPH3, LINC01021, NA NA NA NA NA NA NA NA NA LTS-012 ANKRD33B, TARS, TRIO, GUSBP1, LSP1P3, ADAMTS12, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.438724660870264 131 0.0804666067953676 0.95181086952176 6081 0.484274346981502 2 1 1 -6.9584289649282 LTS-012 NA NA NA NA LTS-012 chr5 34880379 34949838 69460 * c(DNAJC21, TTC23L, BRIX1, RAD1) 0.396 1 NA 1.24834284254352 223 0.652038856498129 3 3 0 -5.76441593229501 LTS-012 chr5 34949839 37231153 2281315 * c(NADK2, UGT3A1, CAPSL, DNAJC21, UGT3A2, RANBP3L, NIPBL, IL7R, PRLR, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, MIR580, SPEF2, LMBRD2) 0.440038964080689 85 0.0533337701312645 0.848785145214488 2402 0.377755459682061 2 1 1 -6.78338786460849 LTS-012 chr5 37231154 37238876 7723 * C5orf42 NA 0 NA 1.874 1 NA NA NA NA NA LTS-012 chr5 37238877 38465131 1226255 * c(EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, GDNF, WDR70, C5orf42, NUP155) 0.412146261884302 8 0.0726192369240312 1.07079276395206 617 0.669563642633747 2 1 1 -6.82041529796394 LTS-012 chr5 38465132 38475038 9907 * EGFLAM NA 0 NA 0.488 1 NA NA NA NA NA LTS-012 chr5 38475039 44809162 6334124 * c(CCDC152, LOC100132356, MIR3650, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.440268266449975 69 0.0444087376101774 0.859937212243993 3596 0.555453607280662 2 1 1 -6.78646393124759 LTS-012 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.917664128227165 159 0.389476998931184 2 NA NA -5.76611309240172 LTS-012 chr5 49692017 49698180 6164 * EMB 0.375 1 NA 0.587552437998215 68 0.307196109215466 1 1 0 -5.76452525521397 LTS-012 chr5 49698181 66085489 16387309 * c(LRRC70, FAM159B, LOC100303749, MIR449C, MIR5687, IPO11-LRRC70, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MIER3, CDC20B, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, NA NA NA NA NA NA NA NA NA LTS-012 PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, CENPK, LOC642366, SMIM15, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, HSPB3, NDUFAF2) 0.428799762106644 145 0.0623259277056332 0.766520655990131 7014 0.439195224761161 2 1 1 -7.79336605693409 LTS-012 NA NA NA NA LTS-012 chr5 66085490 66492731 407242 * c(MAST4, CD180) NA 0 NA 0.786935440014799 425 0.349934152565987 2 NA NA -5.79879704292122 LTS-012 chr5 67493960 67493961 2 * character(0) 0.219 1 NA 0.216 1 NA NA NA NA NA LTS-012 chr5 67493962 68800072 1306111 * c(OCLN, CDK7, MARVELD2, CCDC125, PIK3R1, RAD17, SLC30A5, CENPH, TAF9, CCNB1, MRPS36) 0.152807627937619 21 0.0529741626150136 0.601687148478526 962 0.393995869334826 1 1 0 -7.10004496516538 LTS-012 chr5 68800073 70388996 1588924 * c(GUSBP9, NA, OCLN, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.250288035228188 3 0.170986354231364 0.37946740549982 188 0.433579413526122 1 1 0 -7.46275316942461 LTS-012 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.884 1 NA NA NA NA NA LTS-012 chr5 70751404 73207246 2455843 * c(MIR4804, MIR4803, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, TNPO1, MAP1B, BDP1, ANKRA2, MCCC2, ARHGEF28, BTF3, PTCD2, UTP15, CARTPT) 0.171048422232249 27 0.0589956539033782 0.610583811542101 1789 0.315142340018062 1 1 0 -6.94431058018758 LTS-012 chr5 73207247 115779649 42572403 * c(ARRDC3-AS1, CKMT2-AS1, LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, STARD4-AS1, TMEM161B-AS1, MIR3977, LINC01023, EDIL3, COL4A3BP, NREP-AS1, LHFPL2, CDO1, NSA2, POLR3G, CETN3, IQGAP2, CHD1, EPB41L4A-AS1, CKMT2, LYSMD3, AP3S1, SLCO6A1, JMY, POU5F2, POC5, STARD4, WDR36, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, ARSK, FAM81B, NA NA NA NA NA NA NA NA NA LTS-012 CCDC112, PAPD4, DCP2, LIX1, FAM151B, S100Z, DHFR, EFNA5, LINC01554, CMYA5, LVRN, F2R, F2RL1, F2RL2, FER, RHOBTB3, ELL2, SV2C, PPIP5K2, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, GLRX, KIAA0825, GPR150, NBPF22P, RGMB, DMGDH, HEXB, HMGCR, RFESD, APC, ANKRD34B, FAM174A, MTX3, SLCO4C1, TICAM2, KCNN2, LNPEP, MIR9-2, ARSB, MAN2A1, MCC, MEF2C, CRSP8P, NR2F1-AS1, MSH3, RGMB-AS1, PAM, TMED7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PCSK1, GCNT4, COMMD10, POLK, ERAP1, PGGT1B, EPB41L4A-AS2, GIN1, AGGF1, WDR41, TRIM36, RIOK2, FEM1C, SEMA6A, ARRDC3, RASA1, RASGRF2, RPS23, BHMT, EPB41L4A, ERAP2, ARHGEF28, TMEM232, ARL14EPL, LOC644936, LINC00461, FBXL17, YTHDC2, SNORA13, SRP19, SCARNA18, SNORA47, TBCA, MIR583, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, ST8SIA4, REEP5, MCTP1, CAMK4, CAST, NUDT12, ATG10, SPATA9, TSSK1B, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ZCCHC9, SLF1, ZBED3, GFM2, SPZ1, ENC1, AP3B1, TSLP, PDE8B, CCNH, C5orf30, SLC25A46, ATG12, ATP6AP1L, NREP, RAB9BP1, HOMER1, SCAMP1, TTC37, ZFYVE16, PJA2) 0.183982989315527 290 0.0768593147614573 0.531116413844526 16836 0.329455770341814 1 1 0 -7.21774224334274 LTS-012 NA NA NA NA LTS-012 chr5 115779650 132009710 16230061 * c(KIAA1024L, MIR3936, LOC100505841, MIR4633, MIR4460, RAD50, MARCH3, PRRC1, ZNF474, CSF2, CSNK1G3, MGC32805, CEP120, SRFBP1, DMXL1, ADAMTS19, FBN2, ACSL6, TNFAIP8, DTWD2, SLC27A6, SNX24, HINT1, HSD17B4, CHSY3, FAM170A, IL3, IL4, IL5, IL13, IRF1, TEX43, LMNB1, C5orf63, LOX, C5orf56, ALDH7A1, ISOC1, PRR16, RAPGEF6, PHAX, PPIC, LOC553103, CDC42SE2, ZNF608, SEMA6A, CTXN3, LINC01184, SLC12A2, SLC22A4, SLC22A5, NA NA NA NA NA NA NA NA NA LTS-012 GRAMD3, SNX2, LINC00992, MEIKIN, MEGF10, PDLIM4, P4HA2, LYRM7, PRDM6, FTMT, SNCAIP, FNIP1) 0.195810291094032 102 0.0782940313719764 0.57113773674282 5986 0.295073632065374 1 1 0 -6.807423167871 LTS-012 NA NA NA NA LTS-012 chr5 132009711 132018169 8459 * IL4 0.088 1 NA 0.468891027724964 19 0.383011543044414 1 1 0 -5.76542615516848 LTS-012 chr5 132018170 132441626 423457 * c(KIF3A, LEAP2, SOWAHA, SHROOM1, SEPT8, GDF9, UQCRQ, AFF4, HSPA4, IL4, ZCCHC10, CCNI2) 0.156996280452806 5 0.107671723307468 0.554820360918918 1120 0.311611344504044 1 1 0 -6.80167026009936 LTS-012 chr5 132441627 132441632 6 * character(0) NA 0 NA 1.02 1 NA NA NA NA NA LTS-012 chr5 132441633 140185229 7743597 * c(SRA1, VTRNA2-1, MIR874, MIR1289-2, MIR3661, LINC01024, MIR4461, C5orf66, KIF20A, APBB3, SEC24A, BRD8, HNRNPA0, SLC35A4, C5orf24, DCANP1, CTNNA1, SLC25A48, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FSTL4, JADE2, HARS2, LRRTM2, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL9, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, NDUFA2, NA NA NA NA NA NA NA NA NA LTS-012 NEUROG1, NPY6R, IGIP, TIFAB, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PITX1, WDR55, ANKHD1, PPP2CA, TMCO6, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, C5orf15, TRPC7, PURA, ECSCR, SIL1, SKP1, SPOCK1, TCF7, TGFBI, SNHG4, UBE2B, UBE2D2, VDAC1, WNT8A, TXNDC15, CAMLG, SLC4A9, NME5, PCBD2, PSD2, CYSTM1, EIF4EBP3, CDC23, CDKN2AIPNL, CD14, MYOT, NRG2, CXCL14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 H2AFY, SMAD5-AS1, MATR3, DDX46, CDC25C, SLC23A1) 0.112305824944373 77 0.0429100937415397 0.868599302878481 7609 0.604793439305447 2 2 0 -6.76633363794341 LTS-012 NA NA NA NA LTS-012 chr5 140185230 140554808 369579 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.102791439398452 19 0.0318431830081976 0.694379651377109 1043 0.338444111299921 2 2 0 -7.02965971493373 LTS-012 chr5 140554809 140554820 12 * PCDHB7 NA 0 NA 0.245 1 NA NA NA NA NA LTS-012 chr5 140554821 140558897 4077 * c(PCDHB8, PCDHB7) 0.0448483829664596 2 0.0106066017177982 0.196993805218824 64 0.210171726837614 6 6 0 -7.08873996198872 LTS-012 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.209 1 NA NA NA NA NA LTS-012 chr5 140559822 140871300 311479 * c(PCDHGA12, PCDHGC3, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.115012490487869 42 0.0408414472016334 0.751738781050459 1700 0.464967884974969 2 2 0 -6.7692960921389 LTS-012 chr5 140871301 141318947 447647 * c(LOC100505658, DIAPH1, PCDHGA12, RELL2, PCDH1, PCDHGC3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, ARAP3, LOC729080, PCDHGB4, HDAC3, FCHSD1, PCDHGA8, KIAA0141) 0.123550167185912 19 0.0237773542073002 1.09641927345647 957 0.545699433448237 2 2 0 -6.78173079216089 LTS-012 chr5 141318948 147207453 5888506 * c(GNPDA1, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DPYSL3, STK32A, FGF1, ARHGAP26, NR3C1, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, HMHB1, GRXCR2, SPINK1, NDFIP1, YIPF5, SPRY4, RNF14, KIAA0141, JAKMIP2) 0.110166069815459 48 0.0534573428071392 0.950013311101052 2781 2.59151143225511 2 2 0 -6.75523774071013 LTS-012 chr5 147207454 147207574 121 * SPINK1 NA 0 NA 0.617 1 NA NA NA NA NA LTS-012 chr5 147207575 148207836 1000262 * c(SPINK5, SCGB3A2, SPINK13, ADRB2, HTR4, C5orf46, SPINK6, SPINK14, SPINK9, SPINK1, SH3TC2, FBXO38, SPINK7) 0.149734772200515 3 0.0735119037979564 0.75954474395021 671 0.355854359078093 2 2 0 -6.95865313962535 LTS-012 chr5 148207837 150110777 1902941 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, ADRB2, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, MYOZ3, CD74) 0.0998535980721808 60 0.0337612086430499 1.07123289192132 3603 0.957847315771328 3 3 0 -6.84458421677707 LTS-012 chr5 150110778 150110912 135 * DCTN4 NA 0 NA 0.669 1 NA NA NA NA NA LTS-012 chr5 150110913 159797753 9686841 * c(C5orf52, MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, SOX30, PWWP2A, C1QTNF2, LSM11, ZNF300P1, UBLCP1, ADRA1B, SLC36A2, PPP1R2P3, FAM71B, RNF145, EBF1, SLC36A1, FABP6, FAT2, LARP1, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, LOC285626, LOC285627, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, NIPAL4, IL12B, ITK, SAP30L-AS1, FNDC9, MFAP3, ATOX1, DCTN4, THG1L, GALNT10, NMUR2, SGCD, SPARC, NA NA NA NA NA NA NA NA NA LTS-012 TTC1, CCNJL, SAP30L, HAVCR2, SMIM3, ADAM19, TIMD4, ZNF300, CNOT8, HAND1, MED7, CLINT1) 0.116299636962673 142 0.0381548166155459 0.925814917936473 5987 0.469038319366027 2 2 0 -6.76395989962473 LTS-012 NA NA NA NA LTS-012 chr5 159797754 159820165 22412 * ZBED8 NA 0 NA 0.313 1 NA NA NA NA NA LTS-012 chr5 159820166 166802361 6982196 * c(MIR3142, SLU7, NUDCD2, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, MIR146A, TENM2, ZBED8, CCNG1, PTTG1) 0.119056738568475 22 0.0572512689135166 0.77358125761688 1202 0.424793452018715 2 2 0 -7.20748376663504 LTS-012 chr5 166802362 168727622 1925261 * c(MIR103B1, WWC1, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, MIR585, PANK3) 0.112268640318099 19 0.0473109040013706 1.1094837872162 1086 0.530139491280252 2 2 0 -6.92831481462236 LTS-012 chr5 168727623 169015342 287720 * c(SPDL1, SLIT3) NA 0 NA 0.56 1 NA NA NA NA NA LTS-012 chr5 169015343 169690037 674695 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, LCP2, SPDL1) 0.124883596074224 16 0.0380210468030537 0.81805524037887 665 0.312450612530052 2 2 0 -6.77818802343051 LTS-012 chr5 169690038 169693784 3747 * LCP2 NA 0 NA 1.181 1 NA NA NA NA NA LTS-012 chr5 169693785 175386676 5692892 * c(LOC100268168, MIR3912, MIR4634, CPLX2, C5orf47, NKX2-5, CREBRF, DRD1, DUSP1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, KCNMB1, LCP2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, ERGIC1, RANBP17, BNIP1, SNORA74B, STK10, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.106283197630607 72 0.0482585932571722 1.0267847820095 3024 0.571528596364452 2 2 0 -6.96474782208536 LTS-012 chr5 175386677 175392087 5411 * THOC3 NA 0 NA 0.261101489864498 72 0.25508910000951 0 NA NA -5.7662528655065 LTS-012 chr5 175392088 175541200 149113 * c(FAM153B, THOC3) 0.367 1 NA 0.69537388933267 84 1.14864364692658 1 1 0 -5.76777092147487 LTS-012 chr5 175541201 175665476 124276 * c(LOC100507387, FAM153B, SIMC1, LOC643201) NA 0 NA 2.604 1 NA NA NA NA NA LTS-012 chr5 175665477 176734855 1069379 * c(MIR4281, GPRIN1, CLTB, HIGD2A, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, HK3, SIMC1, NOP16, UIMC1, RAB24, CDHR2, KIAA1191, NSD1, SNCB, MXD3, UNC5A) 0.101460051516297 35 0.0535642236051282 0.994489093817025 2136 0.506480612585747 2 2 0 -6.8307137847056 LTS-012 chr5 176734856 176734945 90 * MXD3 NA 0 NA 1.314 1 NA NA NA NA NA LTS-012 chr5 176734946 176916516 181571 * c(RGS14, LMAN2, DBN1, F12, GRK6, PRR7-AS1, PFN3, SLC34A1, PRR7, MXD3, PDLIM7) 0.100210423236212 13 0.0266914948520291 1.36089948300675 661 0.621422977357736 3 3 0 -6.87845663846615 LTS-012 chr5 176916517 176929185 12669 * c(DOK3, PDLIM7) 0.044 1 NA 1.63355169786568 53 0.655297229783091 4 4 0 -5.76442988034495 LTS-012 chr5 176929186 177075865 146680 * c(B4GALT7, LOC202181, DDX41, FAM193B, TMED9, DOK3) 0.0766919946664678 12 0.022698952051635 1.2768184089755 411 0.704264348102043 4 4 0 -6.82289288287283 LTS-012 chr5 177075866 177098999 23134 * LOC202181 NA 0 NA 0.16 1 NA NA NA NA NA LTS-012 chr5 177099000 177348003 249004 * c(LOC202181, FAM153A, LOC728554) NA 0 NA 0.73219879426101 166 0.444150153910469 2 NA NA -5.7956859721061 LTS-012 chr5 177348004 180662375 3314372 * c(MIR1229, MIR4638, HEIH, BTNL3, MGAT4B, ZNF354B, OR2Y1, BTNL9, TBC1D9B, N4BP3, FLT4, RASGEF1C, OR2V1, OR2V2, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, TRIM7, CANX, PHYKPL, SQSTM1, TRIM41, COL23A1, SCGB3A1, ADAMTS2, NA NA NA NA NA NA NA NA NA LTS-012 MAML1, GFPT2) 0.0832705867259904 142 0.051443298841586 1.30251794108862 4321 0.794101699448396 3 3 0 -6.74415365021798 LTS-012 NA NA NA NA LTS-012 chr5 180662376 180688111 25736 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 1.03399609098492 153 0.472246033930903 2 NA NA -5.76579390673411 LTS-012 chr6 203389 312023 108635 * DUSP22 0.236 1 NA 1.34730720582036 25 0.310420209823179 3 3 0 -5.76917707857547 LTS-012 chr6 312024 564515 252492 * c(IRF4, EXOC2, DUSP22) 0.330216110477419 15 0.116479427981327 1.16545835980738 359 0.580788359621893 3 2 1 -6.77611255906566 LTS-012 chr6 564516 599042 34527 * EXOC2 0.492 1 NA 1.20222295438579 41 0.489019119033692 3 3 0 -5.76448785797949 LTS-012 chr6 599043 10393871 9794829 * c(SCARNA27, MIR3691, LOC100506207, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SLC35B3, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, NA NA NA NA NA NA NA NA NA LTS-012 BMP6, BPHL, SSR1, TUBB2A, HULC, TXNDC5, RIOK1, RIPK1, PRPF4B, FOXQ1, CDYL, LY86, EEF1E1) 0.441748644549786 95 0.0509928238589155 1.36121481740432 4029 0.658268433228782 4 2 2 -7.05061276809639 LTS-012 NA NA NA NA LTS-012 chr6 10393872 10396974 3103 * TFAP2A NA 0 NA 2.395 1 NA NA NA NA NA LTS-012 chr6 10396975 10415572 18598 * c(TFAP2A-AS1, TFAP2A) 0.484 1 NA 2.21138559119465 124 1.57350752060099 6 6 0 -5.76441245331254 LTS-012 chr6 10415573 10419596 4024 * c(TFAP2A-AS1, TFAP2A) NA 0 NA 1.504 1 NA NA NA NA NA LTS-012 chr6 10419597 11305429 885833 * c(ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, C6orf52, ERVFRD-1, MAK, NEDD9, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, TMEM14B, GCM2) 0.417226418784109 49 0.0797851227756562 1.30463163913748 1222 0.650928308313304 4 2 2 -6.79442454725243 LTS-012 chr6 11305430 11306179 750 * NEDD9 NA 0 NA 0.594 1 NA NA NA NA NA LTS-012 chr6 11306180 11579757 273578 * c(TMEM170B, NEDD9) 0.439155886454241 7 0.0673989543510806 0.798820877868242 114 0.43102992632961 2 1 1 -6.75565437741566 LTS-012 chr6 11579758 11579762 5 * TMEM170B NA 0 NA 1.313 1 NA NA NA NA NA LTS-012 chr6 11579763 14136373 2556611 * c(TMEM170B, LOC100130357, RANBP9, EDN1, RNF182, PHACTR1, SIRT5, HIVEP1, TBC1D7, NOL7, GFOD1, MCUR1, ADTRP, CD83) 0.431812368070074 42 0.0533270593725553 1.34478419678509 1352 0.681270512094151 4 2 2 -6.81818922806125 LTS-012 chr6 14136374 14136925 552 * CD83 NA 0 NA 1.25939840295686 11 0.362718573602681 3 NA NA -5.76441081941583 LTS-012 chr6 14136926 14137080 155 * CD83 NA 0 NA 4.01 1 NA NA NA NA NA LTS-012 chr6 14137081 15468876 1331796 * c(JARID2, CD83) 0.266 1 NA 2.15605380591023 57 1.49768425002801 6 6 0 -5.76523156711623 LTS-012 chr6 15468877 18467456 2998580 * c(MIR4639, CAP2, KDM1B, RBM24, RNF144B, GMPR, MYLIP, JARID2, NHLRC1, STMND1, FAM8A1, ATXN1, KIF13A, TPMT, DEK, DTNBP1, NUP153) 0.310116881425846 39 0.0528929992127692 2.12331941269566 1960 0.987175093896769 7 5 2 -6.81852254344346 LTS-012 chr6 18467457 18467582 126 * RNF144B 0.463 1 NA 2.93794786104475 3 0.0770346242499651 8 8 0 -5.76441019443585 LTS-012 chr6 18467583 18469157 1575 * RNF144B 0.316 1 NA 2.97985424634937 32 2.36001485779905 8 8 0 -5.76441015901991 LTS-012 chr6 18469158 18572093 102936 * MIR548A1 NA 0 NA 1.529 1 NA NA NA NA NA LTS-012 chr6 18572094 25652832 7080739 * c(SCGN, NRSN1, MBOAT1, HDGFL1, E2F3, GPLD1, ID4, KAAG1, CASC15, GMNN, DCDC2, TDP2, CDKAL1, CARMIL1, ACOT13, PRL, MRS2, SOX4, MIR548A1, NBAT1, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.393911202606025 35 0.0727675936738026 1.41675783527731 2106 0.974177088160348 4 2 2 -6.93120086983909 LTS-012 chr6 25652833 25653598 766 * SCGN NA 0 NA 0.768 1 NA NA NA NA NA LTS-012 chr6 25653599 26600330 946732 * c(SLC17A4, SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, HIST1H2AA, HIST1H2BA, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2APS1, HCG11, BTN2A3P, SLC17A1, BTN1A1, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, NA NA NA NA NA NA NA NA NA LTS-012 HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.446623994036412 22 0.0272587410024557 1.16691152147199 1676 0.53587068287641 2 1 1 -7.07693508153706 LTS-012 NA NA NA NA LTS-012 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.02 1 NA NA NA NA NA LTS-012 chr6 26636496 26638872 2377 * ZNF322 NA 0 NA 0.4783999481699 60 0.262334268909092 1 NA NA -5.76488439701343 LTS-012 chr6 26638873 27925629 1286757 * c(LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, OR2B6, HIST1H1B, ZNF391, GUSBP2, VN1R10P, ZNF184, ZNF204P, ZNF322, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2) 0.436274280488884 2 0.0622253967444162 1.20628235007082 740 0.483109569708041 4 2 2 -6.97041822627129 LTS-012 chr6 27925630 28057388 131759 * c(OR2B6, ZNF165) NA 0 NA 1.02476066751959 46 0.468995423481271 2 NA NA -5.77070545353661 LTS-012 chr6 28057389 28117443 60055 * c(ZSCAN16-AS1, ZSCAN12P1, ZKSCAN8, ZSCAN16) 0.25 1 NA 0.639132753735844 67 0.225364924429856 1 1 0 -5.77795881085497 LTS-012 chr6 28117444 29571323 1453880 * c(ZSCAN23, NKAPL, TOB2P1, GPX6, ZKSCAN4, ZSCAN31, ZNF192P1, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, PGBD1, ZSCAN12) 0.140115519249036 48 0.0486995738472915 0.718047100662413 1704 0.310334791130202 2 2 0 -7.25359994297458 LTS-012 chr6 29571324 30993784 1422461 * character(0) 0.138085012592066 90 0.0556055631361233 0.887260918258356 3210 0.45438081466436 2 2 0 -6.79592627957783 LTS-012 chr6 30993785 30993813 29 * character(0) 0.149 1 NA 0.329 1 NA NA NA NA NA LTS-012 chr6 30993814 30996260 2447 * character(0) 0.127304305619551 7 0.0237937566841148 0.240524657199582 57 0.150148024289349 2 2 0 -6.89884364380122 LTS-012 chr6 30996261 30996314 54 * character(0) 0.137 1 NA 1.486 1 NA NA NA NA NA LTS-012 chr6 30996315 32338374 1342060 * character(0) 0.148059721293973 217 0.0700908475897955 0.884990387288107 5370 0.970568005203307 2 2 0 -6.82739851064234 LTS-012 chr6 32338375 32339404 1030 * character(0) NA 0 NA 0.442 1 NA NA NA NA NA LTS-012 chr6 32339405 32407826 68422 * character(0) 0.151889360602467 33 0.0276678075704884 0.460714726011831 105 0.241825004842413 2 2 0 -7.73428773470191 LTS-012 chr6 32407827 32411286 3460 * character(0) 0.2 1 NA 0.879935297361476 21 0.23104861372612 2 2 0 -5.76442560746318 LTS-012 chr6 32411287 32411573 287 * character(0) 0.106 1 NA 1.00553299992728 5 0.437763406419495 2 2 0 -5.76442166485794 LTS-012 chr6 32411574 32427718 16145 * character(0) 0.111681744511545 2 0.0304055915910216 1.02290875339982 16 0.765069223447569 11 10 1 -6.76476201008613 LTS-012 chr6 32427719 32427735 17 * character(0) 0.087 1 NA 2.909 1 NA NA NA NA NA LTS-012 chr6 32427736 32497964 70229 * HLA-DRB5 0.074054623753466 19 0.0261977410748885 3.80799717468731 67 6.81415693514397 17 16 1 -6.73357983882291 LTS-012 chr6 32497965 32627976 130012 * c(HLA-DQA1, HLA-DRB5) 0.087892577717223 101 0.0609928319112538 1.50763377541896 231 4.48132993917156 3 3 0 -6.73330066935118 LTS-012 chr6 32627977 32627988 12 * character(0) 0.174 1 NA 0.373 1 NA NA NA NA NA LTS-012 chr6 32627989 32793523 165535 * character(0) 0.0954113803236026 68 0.0550561131267465 0.913833518935592 260 0.705676954086191 3 3 0 -6.76531937018447 LTS-012 chr6 32793524 32793770 247 * character(0) 0.265 1 NA 0.655134022269514 5 0.0950931122637176 1 1 0 -5.76484418975345 LTS-012 chr6 32793771 37013127 4219357 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, FANCE, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PPARD, UHRF1BP1, MAPK13, CPNE5, BAK1, RPS10, NA NA NA NA NA NA NA NA NA LTS-012 SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.129850798487885 113 0.0498551251316887 0.87431718932001 7182 0.656925545888032 2 2 0 -6.76011253428799 LTS-012 NA NA NA NA LTS-012 chr6 37013128 37138220 125093 * PIM1 0.159 1 NA 0.991546324832926 11 0.56197390751464 2 2 0 -5.76676053056696 LTS-012 chr6 37138221 44797088 7658868 * c(LOC100131047, LINC01512, TOMM6, MIR4647, MIR4641, MIR4642, MIR4462, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, BTBD9, FOXP4, KLHDC3, TAF8, CCDC167, PTCRA, DNAH8, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, TSPO2, UNC5CL, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, ZNF318, YIPF3, USP49, MDGA1, GNMT, GLO1, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, NA NA NA NA NA NA NA NA NA LTS-012 TREML1, TREML3P, SLC35B2, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, NFYA, MRPL2, PEX6, PGC, PIM1, TREM2, TREM1, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, LRFN2, AARS2, XPO5, PTK7, PRPH2, ZFAND3, C6orf132, MRPL14, DLK2, SRF, TBCC, BYSL, TDRG1, VEGFA, TFEB, TREML2, KCNK16, TTBK1, SUPT3H, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 RNF8, TJAP1, NCR2, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.125487408392888 163 0.0464055325688986 0.882290478483284 9616 0.474963562916384 2 2 0 -6.74727381269767 LTS-012 NA NA NA NA LTS-012 chr6 44797089 46128572 1331484 * c(ENPP4, CLIC5, ENPP5, MIR586, SUPT3H, RUNX2) 0.447 1 NA 0.801632498456147 399 0.357430271134018 2 2 0 -5.84341715452683 LTS-012 chr6 46128573 46136065 7493 * ENPP5 0.442 1 NA 0.858267129958042 46 0.255393307558937 2 2 0 -5.76454896320161 LTS-012 chr6 46136066 46188460 52395 * ENPP5 NA 0 NA 1.222 1 NA NA NA NA NA LTS-012 chr6 46188461 57512678 11324218 * c(ANKRD66, MIR5685, MLIP-IT1, RCAN2, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, TDRD6, FAM83B, ADGRF2, ICK, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, ADGRF1, TNFRSF21, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MEP1A, PTCHD4, MIR133B, MUT, CYP39A1, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, NA NA NA NA NA NA NA NA NA LTS-012 LRRC1, PRIM2, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, CRISP2, LOC730101, GSTA7P, PLA2G7, COL21A1, TFAP2D, GCM1, PAQR8, MLIP, SLC25A27, BAG2, TRAM2) 0.400002318107023 146 0.0883938410660121 1.15004755216246 6784 1.30304673594481 3 2 1 -6.87009376172917 LTS-012 NA NA NA NA LTS-012 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.5731260516001 19 0.542331575709635 4 NA NA -5.76444519217851 LTS-012 chr6 62390154 62442604 52451 * KHDRBS2 0.481 1 NA 1.26894367957421 27 0.686168797187411 3 3 0 -5.76444882184628 LTS-012 chr6 62442605 65149183 2706579 * c(KHDRBS2, PHF3, EYS, LGSN, PTP4A1) 0.454185092320883 7 0.0368620336363788 1.14519951357182 591 0.546776644662371 2 1 1 -7.28328663831357 LTS-012 chr6 65149184 65149260 77 * EYS NA 0 NA 0.799 1 NA NA NA NA NA LTS-012 chr6 65149261 66112409 963149 * c(EYS, LOC441155) 0.453735570613336 23 0.0342111555206096 0.875336873123261 270 0.344008180502714 2 1 1 -7.00789959961152 LTS-012 chr6 66112410 69942319 3829910 * c(EYS, SLC25A51P1, ADGRB3) 0.128 1 NA 0.73503187275902 171 0.407766854087899 2 2 0 -6.27124966008202 LTS-012 chr6 69942320 74214299 4271980 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, RIMS1, MTO1, DPPA5, NA, MIR30A, MIR30C2, OOEP, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472, KHDC1) 0.143303030701681 28 0.0437474715822671 0.723264223934569 2151 0.444435705565324 2 2 0 -7.44927312509082 LTS-012 chr6 74214300 74214574 275 * character(0) NA 0 NA 2.67 1 NA NA NA NA NA LTS-012 chr6 74214575 74217895 3321 * character(0) NA 0 NA 1.85813722422475 40 0.771552299771086 5 NA NA -5.76441383952522 LTS-012 chr6 74217896 107016678 32798783 * c(LIN28B-AS1, TSTD3, HMGN3-AS1, MIR2113, LOC100506804, MIR4464, MIR4643, SYNCRIP, SLC35A1, FUT9, CGA, PNRC1, ASCC3, BVES, MRAP2, RWDD2A, KLHL32, CNR1, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PM20D2, SRSF12, CFAP206, BVES-AS1, PRSS35, LCA5, EEF1A1, AIM1, EPHA7, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, UFL1, ORC3, MMS22L, GABRR1, GABRR2, PNISR, IBTK, SENP6, FBXL4, SLC17A5, SNORD50A, FILIP1, NA NA NA NA NA NA NA NA NA LTS-012 GRIK2, NDUFAF4, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, LIN28B, ME1, MYO6, NT5E, CYB5R4, UBE2J1, COQ3, PGM3, POU3F2, PHIP, AKIRIN2, PREP, FAM46A, TMEM30A, RARS2, SMIM8, LYRM2, SNX14, HACE1, RRAGD, PRDM13, BCKDHB, BACH2, RNY4, PRDM1, LINC01590, POPDC3, TSG1, SIM1, ELOVL4, MAP3K7, SNORD50B, TPBG, TTK, MCHR2-AS1, MANEA, GPR63, SPACA1, SH3BGRL2, MCHR2, FAXC, GJA10, USP45, RNGTT, CCNC, LINC01621, UBE3D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 TBX18, HMGN3, FHL5, ATG5, SNAP91, CASP8AP2) 0.136364221823982 172 0.0572200236189324 0.732773520190585 11551 0.470335611473457 2 2 0 -9.17587130122146 LTS-012 NA NA NA NA LTS-012 chr6 107016679 107016731 53 * AIM1 0.071 1 NA 1.895 1 NA NA NA NA NA LTS-012 chr6 107016732 108797980 1781249 * c(LOC100422737, SEC63, AIM1, LACE1, SCML4, OSTM1, C6orf203, SOBP, QRSL1, PDSS2, BEND3, NR2E1, RTN4IP1, SNX3) 0.113657145801375 32 0.0562786486184821 0.893179081888631 1200 0.456964223703787 2 2 0 -6.74093536793135 LTS-012 chr6 108797981 108798079 99 * LACE1 NA 0 NA 0.752 1 NA NA NA NA NA LTS-012 chr6 108798080 135811736 27013657 * c(TRAPPC3L, LOC100287632, MIR3662, SMLR1, LINC01013, MIR5695, LOC100996634, TRDN, TRAF3IP2, HBS1L, SMPDL3A, GTF3C6, TMEM200A, NUS1, SLC18B1, SLC16A10, COL10A1, CLVS2, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, EPB41L2, EYA4, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, NA NA NA NA NA NA NA NA NA LTS-012 LACE1, FYN, TMEM244, FAM26E, MCM9, ASF1A, MOXD1, AMD1, GJA1, SESN1, GPR6, LINC00326, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, TAAR6, HSF2, RSPH4A, C6orf58, ARG1, KPNA5, HMGA1P7, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LAMA2, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, MYB, HDDC2, TUBE1, CDC40, RWDD1, ENPP1, ENPP3, PLN, AHI1, VNN3, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS12, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, ALDH8A1, MICAL1, SMPD2, MIR548B, TCF21, TPD52L1, TSPYL1, TPI1P3, METTL24, OR2A4, RNF217-AS1, FAM184A, RNF146, TAAR8, ARMC2, RPF2, STX7, L3MBTL3, RSPO3, DDO, SLC22A16, CD164, WISP3, VNN2, VNN1, WASF1, TAAR5, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, ZBTB24, FIG4) 0.132202892777492 221 0.0556989960155206 0.723822001238354 13368 0.389736766648636 2 2 0 -9.68282999082329 LTS-012 NA NA NA NA LTS-012 chr6 135811737 135811771 35 * AHI1 NA 0 NA 0.852 1 NA NA NA NA NA LTS-012 chr6 135811772 139144040 3332269 * c(LOC100130476, LINC00271, NHEG1, MIR3145, GVQW2, MTFR2, IL22RA2, OLIG3, HEBP2, CCDC28A, PDE7B, SLC35D3, IFNGR1, ECT2L, MAP3K5, FLJ46906, PEX7, IL20RA, AHI1, ARFGEF3, NHSL1, PBOV1, PERP, TNFAIP3, MAP7, BCLAF1) 0.22439494239773 29 0.119086516962112 0.805834791379952 2081 0.46584976330628 2 2 0 -7.26684283225924 LTS-012 chr6 139144041 139144120 80 * ECT2L NA 0 NA 0.525 1 NA NA NA NA NA LTS-012 chr6 139144121 139145391 1271 * ECT2L 0.105 1 NA 0.293081359151967 38 0.233419952255485 0 0 0 -5.76573457190139 LTS-012 chr6 139145392 139145397 6 * ECT2L NA 0 NA 0.951 1 NA NA NA NA NA LTS-012 chr6 139145398 147886487 8741090 * c(LOC100132735, MIR3668, LINC01277, LOC100507557, MIR4465, CITED2, RAB32, ADAT2, STXBP5, LOC153910, ZC2HC1B, TXLNB, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, ECT2L, SAMD5, NMBR, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, REPS1, PEX3, STX11, PHACTR2) 0.129843227603836 60 0.0590356088081137 0.72756228257606 3441 0.38005841283304 2 2 0 -8.03354923460279 LTS-012 chr6 147886488 167585786 19699299 * c(UST-AS1, LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, RAET1E-AS1, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, PDE10A, KATNA1, FGFR1OP, SFT2D1, GINM1, TAGAP, CCR6, PACRG, RAET1E, CNKSR3, RAET1L, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, TAB2, SASH1, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, ZC3H12D, IGF2R, NUP43, RAET1G, SUMO4, NA NA NA NA NA NA NA NA NA LTS-012 SAMD5, IYD, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, PCMT1, TFB1M, SNX9, MPC1, PLG, MTRF1L, RMND1, AGPAT4, TULP4, PLEKHG1, ARID1B, TMEM181, ZBTB2, RPS6KA2, RPS18P9, RAET1K, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, VIP, ULBP3, ARMT1, ZDHHC14, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PPP1R14C, RSPH3, FNDC1, LRP11, SERAC1, PPIL4, RNASET2, SYNJ2, LINC00473, LATS1, SYTL3, QKI, WTAP, AKAP12) 0.131211491858314 200 0.0513928646084582 0.808696915059795 10824 0.987100927819892 2 2 0 -6.89042467190243 LTS-012 NA NA NA NA LTS-012 chr6 167585787 167587534 1748 * TCP10L2 0.407 1 NA 0.577638642441621 8 0.226755650425739 1 1 0 -5.7644383242133 LTS-012 chr6 167587535 167791614 204080 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.276116149120643 9 0.142476703748757 0.547717710486748 454 0.407371594727275 1 1 0 -6.92793172895222 LTS-012 chr6 167791615 167794423 2809 * TCP10 NA 0 NA 1.417 1 NA NA NA NA NA LTS-012 chr6 167794424 168376951 582528 * c(HGC6.3, LINC01558, AFDN, AFDN-AS1, TCP10) 0.358465365767401 4 0.0445897970392331 0.840474942225874 428 0.444365894894738 3 2 1 -6.99003723951209 LTS-012 chr6 168376952 168457412 80461 * c(HGC6.3, KIF25, FRMD1) 0 1 NA 1.03740657061063 87 0.606988059749031 2 2 0 -5.76715168281752 LTS-012 chr6 168457413 170064462 1607050 * c(DACT2, WDR27, SMOC2, THBS2, FRMD1) 0.127586504053775 20 0.0287303250755603 0.991338397226434 627 0.481058314453885 2 2 0 -6.81460548043433 LTS-012 chr6 170064463 170065475 1013 * WDR27 NA 0 NA 0.737 1 NA NA NA NA NA LTS-012 chr6 170065476 170657349 591874 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, LINC00574, FAM120B) 0.145929998662855 7 0.0688154882898569 0.750304568538962 477 0.940488662668285 2 2 0 -6.82947593589418 LTS-012 chr6 170657350 170893599 236250 * c(PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.726365514945454 231 0.389620523803829 2 NA NA -5.80598684522639 LTS-012 chr7 193047 286402 93356 * FAM20C 0.295 1 NA 0.646848714230933 77 0.317295829154602 1 1 0 -5.77696057100419 LTS-012 chr7 286403 4876257 4589855 * c(WI2-2373I1.2, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19, AP5Z1) 0.187575324283441 152 0.0574674108626644 0.738479166316464 4335 0.385651852573084 1 1 0 -7.94348520150135 LTS-012 chr7 4876258 4897321 21064 * RADIL NA 0 NA 0.383 1 NA NA NA NA NA LTS-012 chr7 4897322 5161882 264561 * c(RBAK-RBAKDN, MMD2, RBAKDN, RNF216P1, RADIL, PAPOLB, RBAK, ZNF890P) 0.218002443979074 13 0.103049714166239 0.54069163674713 326 0.265818523254744 1 1 0 -6.76831951353767 LTS-012 chr7 5161883 5166461 4579 * ZNF890P NA 0 NA 0.956 1 NA NA NA NA NA LTS-012 chr7 5166462 5545176 378715 * c(SLC29A4, WIPI2, ZNF890P, MIR589, FBXL18, TNRC18) 0.166822099855259 12 0.067506397003274 0.838266166748672 628 0.557849968439148 1 1 0 -6.94615124412671 LTS-012 chr7 5545177 5938351 393175 * c(RNF216-IT1, ZNF815P, CCZ1, RNF216, ACTB, OCM, FSCN1, FBXL18) 0.177654036064214 8 0.0717305224931678 0.635935072696388 349 0.337008185767518 1 1 0 -6.79929828947463 LTS-012 chr7 5938352 5939901 1550 * CCZ1 NA 0 NA 0.274 1 NA NA NA NA NA LTS-012 chr7 5939902 6017391 77490 * c(RSPH10B, CCZ1, PMS2) 0.244657966461281 9 0.13158647346897 0.402251911752339 136 0.348934235974142 1 1 0 -6.86196160181288 LTS-012 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.935 1 NA NA NA NA NA LTS-012 chr7 6018171 6786822 768652 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.187613347613962 41 0.0690583263555119 0.630309592878513 1340 0.350774307777397 1 1 0 -6.79505666311605 LTS-012 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.013 1 NA NA NA NA NA LTS-012 chr7 6790904 6844723 53820 * c(CCZ1B, PMS2CL, RSPH10B2) NA 0 NA 0.270608289503314 89 0.212179709952738 0 NA NA -5.80146354227389 LTS-012 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 2.049 1 NA NA NA NA NA LTS-012 chr7 6845571 8126194 1280624 * c(LOC100131257, GLCCI1, CCZ1B, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.154891775713974 8 0.0574914589929918 0.492664768897687 570 0.310416658118119 1 1 0 -7.10987717027352 LTS-012 chr7 8126195 8153521 27327 * c(GLCCI1, ICA1) 0.196 1 NA 0.568286762254972 77 0.287295243143253 1 1 0 -5.76449660192252 LTS-012 chr7 8153522 17921711 9768190 * c(ISPD-AS1, LRRC72, ARL4A, AGR2, AGR3, DGKB, PER4, AHR, ETV1, VWDE, THSD7A, SNX13, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, AGMO, MEOX2, NDUFA4, TMEM106B, ANKMY2, ISPD, SCIN, PHF14) 0.185467119535928 49 0.0923937521815024 0.524583591940388 2477 0.278252239654908 1 1 0 -6.99155950160361 LTS-012 chr7 17921712 18875542 953831 * c(PRPS1L1, SNX13, HDAC9) NA 0 NA 0.514886269821767 266 0.299595459239704 1 NA NA -5.80277318309877 LTS-012 chr7 18875543 19735766 860224 * c(TWISTNB, FERD3L, TWIST1, HDAC9) 0.364 1 NA 0.995868362326101 107 0.44177353287253 2 2 0 -5.79277915687873 LTS-012 chr7 19735767 26778539 7042773 * c(MIR3146, LOC100506178, KLHL7-AS1, RNU6-16P, MACC1-AS1, GPNMB, IGF2BP3, NUPL2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, TWISTNB, SP8, RPL23P8, TMEM196, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, ABCB5, FAM221A, MACC1, IL6, ITGB8, MIR148A, LOC441204, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SP4, SNORD93, FAM126A, DNAH11, SKAP2, CCDC126, NFE2L3, RAPGEF5, KIAA0087) 0.416398442451271 83 0.0907432496078777 0.859532061080112 3790 0.563862964686363 2 1 1 -6.77177749742267 LTS-012 chr7 26778540 26779482 943 * SKAP2 NA 0 NA 1.138 1 NA NA NA NA NA LTS-012 chr7 26779483 31591626 4812144 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, ADCYAP1R1, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, CCDC129, ZNRF2, GARS, GHRHR, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, AQP1, LOC401320, DPY19L2P3, MIR196B, CPVL, FKBP14, NEUROD6, WIPF3, LOC646762, MIR550A1, NA NA NA NA NA NA NA NA NA LTS-012 GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, SCRN1, TRIL) 0.445146346582874 56 0.081525002140607 1.04258472682226 3419 0.511568867121482 2 1 1 -6.99064545925557 LTS-012 NA NA NA NA LTS-012 chr7 31591627 31592531 905 * CCDC129 NA 0 NA 0.467 1 NA NA NA NA NA LTS-012 chr7 31592532 39874090 8281559 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, PPP1R17, POU6F2, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7 NA NA NA NA NA NA NA NA NA LTS-012 ) 0.440899082479997 141 0.0685389268845103 0.8916449656672 3959 0.447814956338918 2 1 1 -6.74879323673829 LTS-012 NA NA NA NA LTS-012 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.291 1 NA NA NA NA NA LTS-012 chr7 39892331 39989902 97572 * character(0) NA 0 NA 0.434275746938202 40 0.324195310513546 1 NA NA -5.7984965799259 LTS-012 chr7 39989903 48232724 8242822 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, C7orf57, MPLKIP, ABCA13, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, SUN3, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, NA NA NA NA NA NA NA NA NA LTS-012 UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.419606817101382 82 0.122362031394095 0.99727670881991 5380 0.541839478427754 2 1 1 -6.9184735753721 LTS-012 NA NA NA NA LTS-012 chr7 48232725 48237787 5063 * ABCA13 NA 0 NA 0.84 1 NA NA NA NA NA LTS-012 chr7 48237788 55875017 7637230 * c(DDC-AS1, C7orf72, EGFR-AS1, IKZF1, ZPBP, ABCA13, DDC, CDC14C, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, FKBP9P1, VWC2, LINC01446, LANCL2, FIGNL1, VOPP1) 0.434218819823354 50 0.102382834977154 0.862664702545619 2513 0.458365396415746 2 1 1 -6.76826671929043 LTS-012 chr7 55875018 55886706 11689 * SEPT14 NA 0 NA 1.28 1 NA NA NA NA NA LTS-012 chr7 55886707 57233554 1346848 * c(LOC100130849, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.437907758947936 16 0.0505549206309336 1.13126712752475 520 0.766084491998751 2 1 1 -6.81979218418018 LTS-012 chr7 57233555 57533232 299678 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 1.28227373950389 97 0.939968917537397 3 NA NA -5.76465246755502 LTS-012 chr7 62758725 63023528 264804 * ZNF733P 0.262 1 NA 1.31687251161966 7 1.35398839412625 3 3 0 -5.76473400852243 LTS-012 chr7 63023529 66774604 3751076 * c(LOC100128885, LINC01005, MIR4650-2, ZNF273, VKORC1L1, KCTD7, ZNF92, ZNF679, ERV3-1, CRCP, RABGEF1, LINC00174, GUSB, ZNF680, ASL, LOC441242, ZNF727, GS1-124K5.11, SBDS, ZNF117, ZNF107, PMS2P4, TMEM248, TYW1, LOC641746, CCT6P3, CCT6P1, INTS4P2, YWHAEP1, STAG3L4, SNORA22, ZNF736, GTF2IRD1P1, ZNF735, ZNF138, TPST1) 0.42456396744924 27 0.0538769834412557 0.957299675301459 1607 0.874740192473462 2 1 1 -6.75168389277479 LTS-012 chr7 66774605 66774657 53 * STAG3L4 NA 0 NA 1.082 1 NA NA NA NA NA LTS-012 chr7 66774658 66786524 11867 * STAG3L4 0.384424022754144 5 0.109897679684332 0.485585380129775 38 0.135657096368615 2 1 1 -6.9778898809165 LTS-012 chr7 69063868 71248232 2184365 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.404694408514286 6 0.19572599895432 1.27869454556577 402 0.892768266073831 3 2 1 -6.76454198995744 LTS-012 chr7 71248233 72717506 1469274 * c(MIR4650-1, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, CALN1, FKBP6, POM121) 0.365239284639432 3 0.268009950064048 0.840759822215089 499 0.726922718225623 2 1 1 -6.77519868473741 LTS-012 chr7 72717507 72717590 84 * c(NSUN5, FKBP6) NA 0 NA 0.836 1 NA NA NA NA NA LTS-012 chr7 72717591 74210975 1493385 * c(MIR4284, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, NSUN5, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, GTF2IRD2, DNAJC30, FKBP6, BAZ1B, BCL7B, GTF2IRD1) 0.462670884808072 33 0.0307641627892132 1.16327824656658 1929 0.594391908805368 2 1 1 -7.50289784553688 LTS-012 chr7 74210976 74211405 430 * GTF2IRD2 NA 0 NA 0.597 1 NA NA NA NA NA LTS-012 chr7 74211406 75048064 836659 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.347023408492908 6 0.109753663568314 0.758932631025256 235 0.563973498427481 3 2 1 -7.09944627351546 LTS-012 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.754 1 NA NA NA NA NA LTS-012 chr7 75048588 76247668 1199081 * c(POM121C, LOC100133091, MIR4651, CCL26, DTX2, SSC4D, SRRM3, POMZP3, HIP1, HSPB1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A) 0.43663710873965 37 0.0887510436431468 1.15623840798417 1223 0.587912848837847 2 1 1 -6.86669499163452 LTS-012 chr7 76247669 76255452 7784 * c(LOC100133091, POMZP3) 0.383 1 NA 0.611481290932461 7 0.309754972288005 1 1 0 -5.76484126937738 LTS-012 chr7 76255453 76634994 379542 * c(LOC100133091, POMZP3, DTX2P1-UPK3BP1-PMS2P11) 0.402939145338696 3 0.152915009073668 1.36370384722212 65 0.999911555463782 4 2 2 -6.75693770873351 LTS-012 chr7 76634995 76713177 78183 * c(PMS2P9, DTX2P1-UPK3BP1-PMS2P11) NA 0 NA 0.664 1 NA NA NA NA NA LTS-012 chr7 76713178 94298361 17585184 * c(MIR548M, APTR, MAGI2-AS3, MIR4652, MIR548AU, MAGI2-AS2, LOC101409256, AKAP9, CDK6, BET1, SEMA3A, SEMA3C, FGL2, DBF4, TP53TG1, COL1A2, RUNDC3B, CYP51A1, SAMD9L, C7orf62, ZNF804B, RSBN1L, KIAA1324L, SEMA3D, PEG10, HEPACAM2, FAM133B, STEAP2, STEAP1, PCLO, GNAI1, GNG11, GNGT1, GRM3, HGF, GNAT3, RPL13AP17, LRRD1, DPY19L2P4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, GSAP, ANKIB1, CROT, SAMD9, VPS50, SLC25A40, NA NA NA NA NA NA NA NA NA LTS-012 PHTF2, MIR489, CCDC146, GATAD1, PTPN12, CASD1, SRI, MIR653, CACNA2D1, TMEM243, STEAP4, MTERF1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, TMEM60, GTPBP10, KRIT1, SGCE, CLDN12, CD36, SEMA3E, MAGI2, DMTF1) 0.43231367550228 195 0.058619246599565 0.844092442091261 8751 0.425468204226219 2 1 1 -6.94679466106648 LTS-012 NA NA NA NA LTS-012 chr7 94298362 97822115 3523754 * c(LOC100506136, SLC25A13, DLX5, DLX6, DYNC1I1, LMTK2, PEG10, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, SDHAF3, TAC1, MIR591, SHFM1) 0.429039679920492 21 0.0629175197040879 0.957745324589716 1363 0.436050501460854 2 1 1 -6.77953493176256 LTS-012 chr7 97822116 97822957 842 * LMTK2 NA 0 NA 0.675347687145321 22 0.272085583842777 1 NA NA -5.76466524257122 LTS-012 chr7 97822958 97835640 12683 * LMTK2 0.481 1 NA 1.33688287197717 57 0.537121642201562 3 3 0 -5.76456333363941 LTS-012 chr7 97835641 99054604 1218964 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, BHLHA15, TMEM130, LMTK2, BRI3, TECPR1, PTCD1, KPNA7, NPTX2, BAIAP2L1, SMURF1, TRRAP, MYH16, BUD31) 0.402844753404315 15 0.128549527235151 1.23558977205607 1661 0.583961722056281 3 2 1 -6.7961851860289 LTS-012 chr7 99054605 99668615 614011 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CPSF4, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, AZGP1P1, CYP3A43, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.449352507884789 16 0.0511414704520705 0.872226025234464 1360 0.417462987210237 2 1 1 -6.81794472765545 LTS-012 chr7 99668616 100352948 684333 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, MOSPD3, GIGYF1, TAF6, TFR2, ZAN, ZNF3, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.44075853989975 63 0.107089475010209 1.07702702714642 2451 0.489326346932304 2 1 1 -6.79524949510937 LTS-012 chr7 100352949 100468103 115155 * c(EPHB4, SLC12A9, TRIP6, ZAN) 0.458803676378386 11 0.0281534754838223 1.38839101768735 455 2.3352021920294 4 2 2 -7.29702249232842 LTS-012 chr7 100468104 100549573 81470 * c(UFSP1, ACHE, SRRT, TRIP6) 0.285 1 NA 1.21987884559933 221 0.641344931903513 3 3 0 -5.76443822633873 LTS-012 chr7 100549574 100674425 124852 * c(MUC12, MUC17) 0.371135356540971 138 0.0791480598042792 1.38906554819428 464 0.936378246374699 3 2 1 -6.74412231213373 LTS-012 chr7 100674426 100678616 4191 * MUC17 0.348290954597714 12 0.101347586716869 0.85804818583906 62 0.441301179575422 3 2 1 -6.74407662927992 LTS-012 chr7 100678617 100678740 124 * MUC17 0.466 1 NA 0.799928850978831 3 0.330539458058086 2 2 0 -5.76441911063382 LTS-012 chr7 100678741 100701861 23121 * MUC17 0.451800761343188 8 0.0423638575742511 0.712254998153675 198 0.320999537533872 2 1 1 -6.89258125383685 LTS-012 chr7 100701862 102257216 1555355 * c(RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.451424581834948 38 0.0802128746720743 1.20771817541993 1768 0.654060629441349 4 2 2 -6.92824766741738 LTS-012 chr7 102257217 102279673 22457 * c(SPDYE2B, RASA4, POLR2J2) NA 0 NA 3.90435703890133 12 4.26098857500975 11 NA NA -5.76441032675905 LTS-012 chr7 102279674 102318880 39207 * c(SPDYE2B, RASA4, POLR2J2) NA 0 NA 0.726 1 NA NA NA NA NA LTS-012 chr7 102318881 102412901 94021 * c(RASA4, FAM185A) 0.489 1 NA 0.71219877306098 37 0.225055732170017 2 2 0 -5.82348318578317 LTS-012 chr7 102412902 112127133 9714232 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, NAMPT, LRRC17, COG5, DUS4L, ZNF277, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, DNAJB9, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, PUS7, LRRN3, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, NA NA NA NA NA NA NA NA NA LTS-012 ARMC10, IMMP2L, PMPCB, DOCK4) 0.439389226515136 65 0.0699561847763408 0.873973984878754 5388 0.458233502317052 2 1 1 -6.76320444393385 LTS-012 NA NA NA NA LTS-012 chr7 112127134 112129870 2737 * LSMEM1 NA 0 NA 0.525 1 NA NA NA NA NA LTS-012 chr7 112129871 115897586 3767716 * c(MIR3666, BMT2, TFEC, TES, LSMEM1, MDFIC, LINC00998, GPR85, PPP1R3A, TMEM168, FOXP2) 0.444246908094943 15 0.116855751534388 0.698839693961796 1054 0.365952374429764 2 1 1 -7.64809497769305 LTS-012 chr7 115897587 115897665 79 * TES NA 0 NA 0.858 1 NA NA NA NA NA LTS-012 chr7 115897666 120988959 5091294 * c(FAM3C, CFTR, ASZ1, TSPAN12, TES, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.43632690601156 35 0.0968970258235276 0.845828766356849 2013 0.47517947725978 2 1 1 -6.78293159923708 LTS-012 chr7 120988960 120988965 6 * FAM3C NA 0 NA 0.43 1 NA NA NA NA NA LTS-012 chr7 120988966 120990550 1585 * FAM3C 0.353 1 NA 0.329287067411405 40 0.13245677572664 0 0 0 -5.77414417599547 LTS-012 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.74 1 NA NA NA NA NA LTS-012 chr7 120990582 123671671 2681090 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, RNF133, HYAL4, HYALP1, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, TMEM229A, WASL, CADPS2) 0.438269126834371 28 0.0471506086300049 0.807097123941265 1514 0.397214131798307 2 1 1 -6.86380341851627 LTS-012 chr7 123671672 123672720 1049 * TMEM229A 0.464 1 NA 0.864873629806078 23 0.25655244708006 2 2 0 -5.76442336554239 LTS-012 chr7 123672721 127225664 3552944 * c(C7orf77, ZNF800, POT1, GPR37, GRM8, MIR592, TMEM229A, GCC1) 0.432723874688989 10 0.0820664365011666 0.786181860007874 496 0.372211981538585 2 1 1 -6.99268056022882 LTS-012 chr7 127225665 141765684 14540020 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, MGC27345, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, CLEC5A, MKRN1, UBN2, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, WEE2-AS1, TPI1P2, FLJ40288, HIPK2, WDR91, HILPDA, FSCN3, MESTIT1, TSPAN33, NA NA NA NA NA NA NA NA NA LTS-012 AGBL3, FAM71F2, STRA8, KLRG2, LOC349160, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, FAM180A, LEP, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NDUFB2, CNOT4, NRF1, WEE2, ATP6V0A4, PAX4, TAS2R3, TAS2R4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, RBM28, TMEM140, AGK, METTL2B, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, STRIP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PTN, KIAA1549, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, PARP12, CREB3L2, SMO, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, MIR593, UBE2H, LUZP6, C7orf49, TTC26, CALD1, KDM7A, CALU, SLC37A3, FAM71F1, SLC35B4, TMEM209, TRIM24, MGAM, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, CPA5, CEP41) 0.439867301652033 263 0.0737966155702637 0.986818207989044 11599 0.49973368094519 2 1 1 -7.04126187663459 LTS-012 NA NA NA NA LTS-012 chr7 141765685 141766489 805 * MGAM NA 0 NA 0.386 1 NA NA NA NA NA LTS-012 chr7 141766490 141793453 26964 * MGAM 0 1 NA 0.403467517274047 88 0.565382499685733 1 1 0 -5.76964212884952 LTS-012 chr7 141793454 141794246 793 * MGAM NA 0 NA 0.638 1 NA NA NA NA NA LTS-012 chr7 141794247 142013226 218980 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.451228375526151 6 0.0252797679314243 0.878938700353318 424 0.357809040687747 2 1 1 -7.12303892990174 LTS-012 chr7 142013227 142045446 32220 * character(0) 0.236 1 NA 0.912704273771609 41 0.484525123313488 2 2 0 -5.76443286291264 LTS-012 chr7 142045447 142920258 874812 * c(MTRNR2L6, OR9A2, C7orf34, PRSS3P2, EPHB6, TAS2R39, TAS2R40, OR6V1, KEL, PIP, TRPV6, TRPV5, PRSS1, OR6W1P) 0.324700559982359 56 0.089724728743262 1.08458847880188 1070 0.546704151743984 3 2 1 -6.86012697331368 LTS-012 chr7 142920259 142960202 39944 * character(0) NA 0 NA 2.105 1 NA NA NA NA NA LTS-012 chr7 142960203 143295592 335390 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.365655846963235 8 0.147129134242193 1.54426689254405 733 0.905860770794733 3 2 1 -6.74554186349189 LTS-012 chr7 143295593 143295603 11 * character(0) NA 0 NA 0.151 1 NA NA NA NA NA LTS-012 chr7 143295604 143321183 25580 * TCAF2 NA 0 NA 0.244986890816762 63 0.171343831675826 0 NA NA -5.77303266565954 LTS-012 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.763 1 NA NA NA NA NA LTS-012 chr7 143400289 143884193 483905 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.354215839773547 8 0.0605520732215551 1.03697619640213 309 0.638775041916634 3 2 1 -6.7627971023511 LTS-012 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.109 1 NA NA NA NA NA LTS-012 chr7 143928927 143956742 27816 * c(OR2A7, ARHGEF34P) 0.162 1 NA 0.494037435800662 39 0.412538685872526 1 1 0 -5.76580199571773 LTS-012 chr7 143956743 143982482 25740 * ARHGEF34P NA 0 NA 0.406909633686652 56 0.307855555183178 1 NA NA -5.78034903565896 LTS-012 chr7 143982483 144015658 33176 * ARHGEF34P 0.462 1 NA 1.3029962405188 15 0.742788843929866 3 3 0 -5.7645022848322 LTS-012 chr7 144015659 144074368 58710 * ARHGEF5 NA 0 NA 0.785406963924545 62 0.44277847675983 2 NA NA -5.76761521310312 LTS-012 chr7 144074369 148951257 4876889 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, C7orf33, EZH2, CNTNAP2, TPK1, ZNF398, ARHGEF5, ZNF212, ZNF282, CUL1, PDIA4) 0.403715357521525 42 0.0847801419783406 1.37446891453841 1384 0.984410204600392 4 2 2 -6.84894851118535 LTS-012 chr7 148951258 149577802 626545 * c(ZNF783, LOC155060, ZNF746, ATP6V0E2, ZNF467, SSPO, ZNF777, ATP6V0E2-AS1, ZNF862, ZNF212, ZNF767P, KRBA1) 0.417821619068339 37 0.0377584387879014 1.62599371473164 1486 0.676961759636691 4 2 2 -6.79729853858718 LTS-012 chr7 149577803 149588252 10450 * character(0) NA 0 NA 0.086 1 NA NA NA NA NA LTS-012 chr7 149588253 149986715 398463 * ACTR3C NA 0 NA 0.890968704611581 159 0.657776160097984 2 NA NA -5.76444112369179 LTS-012 chr7 149986716 149990032 3317 * ACTR3C NA 0 NA 2.142 1 NA NA NA NA NA LTS-012 chr7 149990033 150554938 564906 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.363755000975376 13 0.0455914128216808 1.33253228424815 868 0.619209956921196 3 2 1 -6.74004540091504 LTS-012 chr7 150554939 151506315 951377 * c(WDR86-AS1, MIR3907, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, AOC1, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, RHEB, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.372996353293419 50 0.0450436930736622 1.69744347701735 2012 0.760451705498723 3 2 1 -6.87220783345799 LTS-012 chr7 151506316 158325338 6819023 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, DNAJB6, PRKAG2-AS1, LOC100506585, C7orf13, RNF32, RBM33, GALNTL5, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, PRKAG2, ACTR3B, PTPRN2, KMT2C, GALNT11, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, XRCC2, UBE3C) 0.384184701315919 119 0.0779572410637307 1.48033652249481 3492 1.22978043554732 3 2 1 -6.87062984270862 LTS-012 chr7 158325339 158415011 89673 * c(MIR5707, PTPRN2, MIR595) 0.442 1 NA 1.27928920777525 23 0.742085060592214 3 3 0 -5.76451129690821 LTS-012 chr7 158415012 158829498 414487 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) 0.411554399221005 57 0.0463762873143448 1.42486372808762 703 0.665561497410705 5 3 2 -6.80097844194794 LTS-012 chr7 158829499 159025951 196453 * VIPR2 NA 0 NA 1.32021903013302 71 0.584397622072596 3 NA NA -5.76580900338018 LTS-012 chr8 182757 182807 51 * ZNF596 0 1 NA 2.856 1 NA NA NA NA NA LTS-012 chr8 182808 7305471 7122664 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.194069877471858 94 0.0548103821488807 0.624703829264894 2432 0.325293883401266 1 1 0 -7.22869526663412 LTS-012 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.021 1 NA NA NA NA NA LTS-012 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.21741736414937 3 0.136111473922419 0.214975391556518 106 0.210241178624878 0 0 0 -7.92673653804711 LTS-012 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.162 1 NA NA NA NA NA LTS-012 chr8 8175295 15588292 7412998 * c(FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LINC00681, DLC1, CLDN23, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, XKR6, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MIR124-1, MSRA, MIR383, PINX1, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, NA NA NA NA NA NA NA NA NA LTS-012 PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ERI1, LONRF1, MFHAS1, RP1L1) 0.180192238213515 150 0.0645600149142414 0.624127165675146 3403 0.385544773351373 1 1 0 -7.12809580874539 LTS-012 NA NA NA NA LTS-012 chr8 15588293 15590862 2570 * TUSC3 NA 0 NA 0.386 1 NA NA NA NA NA LTS-012 chr8 15590863 15967732 376870 * c(MSR1, TUSC3) 0.239160971533831 2 0.0360624458405139 0.336643578925216 103 0.146722731267347 1 1 0 -9.46531408678024 LTS-012 chr8 15967733 15977867 10135 * MSR1 NA 0 NA 2.153 1 NA NA NA NA NA LTS-012 chr8 15977868 20079171 4101304 * c(NAT2, LOC100128993, VPS37A, FGL1, PSD3, FGF20, MICU3, CNOT7, LPL, ASAH1, MSR1, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, INTS10, CSGALNACT1, MTUS1, SH2D4A, SLC7A2, SLC18A1, NAT1, MTMR7) 0.207085554946672 68 0.0889876830020622 0.564488865866889 2446 0.415755610202157 1 1 0 -6.74959591234928 LTS-012 chr8 20079172 20082662 3491 * ATP6V1B2 NA 0 NA 2.021 1 NA NA NA NA NA LTS-012 chr8 20082663 43147844 23065182 * c(RBPMS-AS1, LOC100130964, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR4469, MIR548O2, LZTS1-AS1, NRG1-IT3, SORBS3, NPM2, DCTN6, PNMA2, ADAM28, AP3M2, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CHRNB3, SMIM19, CLU, GOT1L1, NKX2-6, GPAT4, UNC5D, LETM2, HGSNAT, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, NKX6-3, KCNU1, ADAM3A, IDO2, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, NA NA NA NA NA NA NA NA NA LTS-012 LGI3, DMTN, EPHX2, EXTL3, PTK2B, FGFR1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, FNTA, LEPROTL1, SLC39A14, ADAM2, LOC254896, ADAM5, ADGRA2, GFRA2, DKK4, LSM1, ADAMDEC1, GNRH1, ANK1, LOC286059, LOC286114, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, POTEA, IKBKB, IDO1, LOC389641, NUGGC, C8orf86, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, GOLGA7, SLC25A37, SCARA3, SARAF, PLAT, PNOC, C8orf58, POLB, KCTD9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 WHSC1L1, PIWIL2, ELP3, THAP1, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, HR, PBK, ZNF395, BIN3, TEX15, C8orf4, CCAR2, PLEKHA2, LINC00589, MBOAT4, MIR486-1, SFRP1, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, SLC20A2, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, VDAC3, WRN, DUSP26, HMBOX1, ZMAT4, FZD3, RNF122, NUDT18, UBXN8, KAT6A, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, RNF170, TM2D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 POMK, GINS4, HOOK3, PLPP5, MAK16, FUT10, ADAM18, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, CHRNA6, DOK2, ASH2L, CHMP7, BAG4, ENTPD4, PHYHIP) 0.17715351469386 298 0.0707522594881193 0.636252570689767 16564 0.485332713591205 1 1 0 -7.66739001516582 LTS-012 NA NA NA NA LTS-012 chr8 43147845 43212050 64206 * POTEA NA 0 NA 0.615854322399354 37 0.391335501168083 1 NA NA -5.76698769514258 LTS-012 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.363 1 NA 0.833639941085399 47 0.385646527559002 2 2 0 -5.77213721352961 LTS-012 chr8 48102988 61535709 13432722 * c(SBF1P1, LOC100287846, LINC00968, LINC01606, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CYP7A1, SDR16C5, SPIDR, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, PRKDC, RAB2A, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, UBE2V2, CA8, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.428357239965832 88 0.070740861331058 1.00061781612813 4706 0.472619273311995 2 1 1 -7.13120510382231 LTS-012 chr8 61535710 61775117 239408 * c(CHD7, RAB2A) NA 0 NA 1.06973377030691 294 0.51018682041057 3 NA NA -5.77626589529584 LTS-012 chr8 61775118 62595068 819951 * c(LOC100130298, CLVS1, ASPH, CHD7) 0.311 1 NA 1.29290662021631 441 0.826116074166512 3 3 0 -5.76572829694879 LTS-012 chr8 62595069 75262883 12667815 * c(STAU2-AS1, TCF24, MIR124-2HG, C8orf89, MSC-AS1, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, MIR4470, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, C8orf34, ADHFE1, CRH, RDH10, MCMDC2, SBSPON, EYA1, RRS1, SULF1, TRAM1, LY96, SGK3, YTHDF3, C8orf46, PTTG3P, STAU2, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LOC401463, MIR124-2, ASPH, MYBL1, LACTB2, PDE7A, GDAP1, TMEM70, NA NA NA NA NA NA NA NA NA LTS-012 ARMC1, UBE2W, LINC00251, C8orf44, JPH1, CPA6, RPL7, PRDM14, SNHG6, SNORD87, UG0898H09, TCEB1, TERF1, TTPA, CSPP1, VCPIP1, PREX2, SLCO5A1, TRIM55, DNAJC5B, GGH, TRPA1, MSC, KCNB2, CYP7B1, MTFR1) 0.326532767190886 118 0.0756749115312336 1.3859212773664 5544 0.699507561964163 3 2 1 -7.04401742155696 LTS-012 NA NA NA NA LTS-012 chr8 75262884 75263448 565 * GDAP1 NA 0 NA 0.827 1 NA NA NA NA NA LTS-012 chr8 75263449 90915132 15651684 * c(ZFHX4-AS1, REXO1L2P, MIR2052, MIR5708, MIR5681A, MIR5681B, LOC101241902, WWP1, STMN2, DCAF4L2, RALYL, SLC7A13, CNBD1, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, C8orf59, MMP16, MIR2052HG, PI15, ZC2HC1A, RMDN1, PMP2, GDAP1, CNGB3, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, OSGIN2, CA1, CA2, CA3, ZFAND1, ZFHX4, CRISPLD1, LRRCC1, PSKH2, NA NA NA NA NA NA NA NA NA LTS-012 RIPK2, CPNE3, CHMP4C) 0.36105740576396 74 0.0738255495978002 1.21074304422863 4407 1.02342382909551 3 2 1 -6.73772668351876 LTS-012 NA NA NA NA LTS-012 chr8 90915133 90921771 6639 * OSGIN2 NA 0 NA 0.934 1 NA NA NA NA NA LTS-012 chr8 90921772 92968803 2047032 * c(C8orf88, LRRC69, MIR4661, LINC00534, SLC26A7, DECR1, TMEM64, NBN, OTUD6B, TMEM55A, NECAB1, OSGIN2, CALB1, RUNX1T1) 0.358534393173397 20 0.0629814300116772 0.959051745273733 1133 0.47420545068914 3 2 1 -7.07188942029808 LTS-012 chr8 92968804 92968807 4 * RUNX1T1 NA 0 NA 1.377 1 NA NA NA NA NA LTS-012 chr8 92968808 92988143 19336 * RUNX1T1 0.406 1 NA 1.86042135104048 93 0.696890445738341 5 5 0 -5.76443466501341 LTS-012 chr8 92988144 96048757 3060614 * c(LOC100288748, MIR378D2, FSBP, CDH17, FAM92A1, NDUFAF6, RAD54B, KIAA1429, GEM, TRIQK, DPY19L4, C8orf87, RBM12B, FLJ46284, PDP1, ESRP1, RBM12B-AS1, INTS8, LINC00535, RUNX1T1, TMEM67, CCNE2, TP53INP1) 0.343956491772319 40 0.077704564595488 1.0558415936203 1943 0.544631170599698 3 2 1 -6.91554346008609 LTS-012 chr8 96048758 96053744 4987 * NDUFAF6 NA 0 NA 1.983 1 NA NA NA NA NA LTS-012 chr8 96053745 101084556 5030812 * c(MIR875, MIR3150A, LOC100500773, MIR3150B, C8orf37-AS1, RIDA, CPQ, POP1, OSR2, COX6C, NDUFAF6, C8orf37, VPS13B, ERICH5, RGS22, SNORA72, KCNS2, GDF6, MATN2, MTERF3, LAPTM4B, RPL30, LINC01298, SDC2, STK3, MIR599, UQCRB, PLEKHF2, NIPAL2, TSPYL5, MTDH, PTDSS1) 0.291627945364332 32 0.0693618085395051 1.33569766639389 2418 0.697972074917835 4 3 1 -6.90989682385221 LTS-012 chr8 101084557 126163576 25079020 * c(FAM83A-AS1, MIR2053, MIR3151, BAALC-AS1, MIR3610, ZHX1-C8orf76, MIR4663, MIR4471, MIR5680, LINC00536, COLEC10, RNF139, ZHX1, MAL2, CSMD3, FBXO32, CTHRC1, ZNF572, ABRA, TMEM65, LINC00964, BAALC-AS2, ANKRD46, TMEM74, FAM91A1, SLC30A8, SNX31, DPYS, EXT1, ZHX2, ZFPM2, DCAF13, RNF19A, RGS22, PABPC1, KCNV1, MTBP, ANGPT1, NSMCE2, FBXO43, MRPL13, ATAD2, LRP12, HAS2, ANXA13, KLHL38, RSPO2, EIF3E, SAMD12, FER1L6-AS1, NA NA NA NA NA NA NA NA NA LTS-012 FLJ42969, AARD, NDUFB9, NOV, ODF1, TNFRSF11B, RRM2B, ZNF706, UBR5, AZIN1, ENPP2, ATP6V1C1, POLR2K, TRMT12, OXR1, WDYHV1, SAMD12-AS1, SYBU, ENY2, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, SPAG1, SQLE, TAF2, KLF10, TRHR, TRPS1, COL14A1, YWHAZ, DSCC1, DERL1, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, TATDN1, NACAP1, NCALD, UTP23, C8orf76, NUDCD1, FAM83A, EIF3H, MED30, EBAG9, PKHD1L1, TBC1D31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 EMC2, RIMS2, MTSS1, KIAA0196) 0.318181813662191 190 0.0732616692442312 1.21513351442558 9859 0.724561553898408 3 2 1 -6.94122180542626 LTS-012 NA NA NA NA LTS-012 chr8 126163577 126168094 4518 * NSMCE2 NA 0 NA 1.548 1 NA NA NA NA NA LTS-012 chr8 126168095 126449406 281312 * c(TRIB1, NSMCE2) 0.269298126828377 2 0.0183847763108503 1.43249972021687 96 0.618824304682508 8 6 2 -6.95519877959314 LTS-012 chr8 126449407 127565184 1115778 * c(LINC00861, TRIB1, FAM84B) 0.174 1 NA 1.55644638373505 39 0.397079119648035 4 4 0 -5.76535914251307 LTS-012 chr8 127565185 133584486 6019302 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, HHLA1, ADCY8, FAM84B, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977, OC90, HPYR1) 0.241756264065619 24 0.0706084837042582 1.57364452472994 1398 0.731991234102127 4 3 1 -6.94136136205641 LTS-012 chr8 133584487 133860488 276002 * c(TMEM71, LRRC6, PHF20L1) 0.196649737214233 5 0.116112876116303 1.19770142041377 405 0.66950731939785 5 4 1 -6.87487693197436 LTS-012 chr8 133860489 144940226 11079738 * c(MIR937, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR4472-1, MIR4664, NDRG1, KHDRBS3, PTP4A3, RHPN1, TOP1MT, LYPD2, CYP11B1, CYP11B2, COL22A1, EEF1D, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, SCRIB, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, LINC01591, C8orf31, ZFP41, GPIHBP1, NRBP2, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, FAM135B, PHF20L1, KCNK9, THEM6, CHRAC1, LY6K, SLURP1, NA NA NA NA NA NA NA NA NA LTS-012 SLC45A4, PTK2, ADGRB1, ZFAT, ZFAT-AS1, LINC00051, MROH6, ST3GAL1, SLA, PYCRL, LYNX1, TG, TSTA3, LINC01300, RHPN1-AS1, GSDMD, ZNF696, PSCA, EPPK1, TRAPPC9, TIGD5, LY6D, JRK, WISP1, NAPRT, ZNF623) 0.276186649741192 157 0.0552205560950806 1.69616329991941 6256 0.875638380508355 4 3 1 -6.78868363269005 LTS-012 NA NA NA NA LTS-012 chr8 144940227 144940475 249 * EPPK1 NA 0 NA 0.917 1 NA NA NA NA NA LTS-012 chr8 144940476 145616312 675837 * c(CYC1, ADCK5, BOP1, FBXL6, OPLAH, GRINA, HSF1, WDR97, TMEM249, SPATC1, HGH1, PLEC, EXOSC4, SCX, MIR661, MROH1, SLC52A2, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, DGAT1, GPAA1) 0.299043568428676 94 0.0471045666231132 1.49652133857274 1908 0.664021195755576 4 3 1 -6.79564191731656 LTS-012 chr8 145616313 145618862 2550 * c(ADCK5, CPSF1) 0.341393516127985 3 0.0520032050294339 2.27552057758972 49 0.862858667414295 12 8 4 -6.73389435090913 LTS-012 chr8 145618863 145620296 1434 * c(MIR939, CPSF1) 0.239 1 NA 1.81135865952164 37 0.661712347800184 5 5 0 -5.76441691718227 LTS-012 chr8 145620297 146280802 660506 * c(MIR1234, MFSD3, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, CPSF1, ZNF517, C8orf82, LRRC24, TONSL, CYHR1, VPS28, SLC39A4, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, ARHGAP39, ZNF34, PPP1R16A, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.229974919467871 58 0.0435804670499062 1.84569609283044 2280 0.897847420531071 5 4 1 -6.73821214332764 LTS-012 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 2.000617332574 3 0.171473029949319 5 NA NA -5.76441356678147 LTS-012 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.283 1 NA 0.663939057930189 5 0.0815303624424668 1 1 0 -6.13417989048637 LTS-012 chr9 154796 14082032 13927237 * c(LINC00583, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, LURAP1L, CD274, INSL4, JAK2, VLDLR-AS1, LINC01235, PLPP6, MIR101-2, NFIB, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, TYRP1, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, PUM3) 0.444499893233474 112 0.0570581556326142 0.879141111816263 4803 0.429141972143641 2 1 1 -6.79025455557743 LTS-012 chr9 14082033 14082038 6 * NFIB NA 0 NA 1.212 1 NA NA NA NA NA LTS-012 chr9 14082039 14088289 6251 * NFIB 0.468 1 NA 1.41675844206354 131 0.667361466751532 4 4 0 -5.76451014311797 LTS-012 chr9 14088290 21367429 7279140 * c(C9orf92, MIR3152, MIR4473, MIR4474, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, CCDC171, SLC24A2, ZDHHC21, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MLLT3, NFIB, BNC2, HAUS6, CNTLN, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.42898297907189 79 0.108795328777379 0.85140013665902 3536 0.483845991116458 2 1 1 -6.78489106575998 LTS-012 chr9 21367430 21440975 73546 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.37 1 NA 0.4142226411238 70 0.24431113660654 1 1 0 -5.82822040150961 LTS-012 chr9 21440976 21441037 62 * IFNA1 NA 0 NA 0.611 1 NA NA NA NA NA LTS-012 chr9 21441038 34725202 13284165 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, ELAVL2, C9orf72, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, IFNE, IFNA1, KIF24, IL11RA, AQP3, AQP7, ENHO, LINC01242, TMEM215, MIR31, CNTFR-AS1, LINC01239, SUGT1P1, NA NA NA NA NA NA NA NA NA LTS-012 ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, UBAP1, CHMP5, EQTN, APTX, UBE2R2, SMU1, MIR31HG, UBAP2, PRSS3, IFNK, BAG1, KIAA1161, CCL19, CCL21, DMRTA1, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, C9orf24, PLAA) 0.412777483912964 105 0.102940488337651 0.957486582623463 5050 0.50048921762393 2 1 1 -6.87972100375015 LTS-012 NA NA NA NA LTS-012 chr9 34725203 34726318 1116 * FAM205A NA 0 NA 0.251229554035968 42 0.260095033110108 0 NA NA -5.76464370071263 LTS-012 chr9 34726319 34833277 106959 * c(FAM205A, FAM205BP) 0.347 1 NA 0.826325573899371 86 0.415971469215251 2 2 0 -5.76695234495275 LTS-012 chr9 34833278 34833287 10 * FAM205BP NA 0 NA 0.447 1 NA NA NA NA NA LTS-012 chr9 34833288 34835727 2440 * FAM205BP 0.382247072674746 4 0.117606689152162 0.437290962754167 90 0.383330644673847 3 2 1 -6.76346968040057 LTS-012 chr9 34835728 39140675 4304948 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, CNTNAP3, NA NA NA NA NA NA NA NA NA LTS-012 FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.430635214961749 89 0.114385087145961 0.988886570360959 5073 0.587036697340818 2 1 1 -6.8024362087412 LTS-012 NA NA NA NA LTS-012 chr9 39140676 39172772 32097 * CNTNAP3 NA 0 NA 0.711 1 NA NA NA NA NA LTS-012 chr9 39172773 43861081 4688309 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.46 1 NA 0.601061642349992 110 0.460731561823205 1 1 0 -5.84183930481946 LTS-012 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.771699369395354 8 0.313597558299532 2 NA NA -5.80797630364472 LTS-012 chr9 65602571 68415352 2812782 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.310236939414958 17 0.0970020087724082 2.2784368561404 52 1.82444575221911 7 5 2 -6.74504072855327 LTS-012 chr9 68415353 68433556 18204 * FRG1JP 0.242618766135856 4 0.128689225138186 0.833394718685724 8 0.299977141986328 5 4 1 -6.81937686869548 LTS-012 chr9 68433557 69002317 568761 * c(FRG1HP, FRG1JP) 0.4 1 NA 1.12619377745289 4 0.562543627937721 3 3 0 -5.77418450408939 LTS-012 chr9 69002318 73424910 4422593 * c(LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf135, TMEM252, SMC5, FXN, MAMDC2, FOXD4L3, APBA1, PTAR1, MIR204, LOC440896, C9orf135-AS1, PGM5, PRKACG, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, KLF9, ANKRD20A4, TRPM3, PIP5K1B, FAM189A2, TJP2) 0.439966988223867 24 0.0454319047698255 0.942338078482029 1715 0.408591689981655 2 1 1 -6.798006116027 LTS-012 chr9 73424911 74298866 873956 * c(TMEM2, MIR204, TRPM3) NA 0 NA 0.817918309477558 72 0.484408025705357 2 NA NA -5.78369072541772 LTS-012 chr9 74298867 74622853 323987 * c(C9orf85, TMEM2, ABHD17B) 0.157 1 NA 0.605547075894073 277 0.295774518940557 1 1 0 -5.78018586196228 LTS-012 chr9 74622854 95738993 21116140 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, VPS13A-AS1, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, TMC1, CARNMT1, C9orf57, ANKRD19P, TRPM6, CTSL, CTSLP8, NXNL2, RASEF, LINC00475, PRUNE2, DAPK1, ECM2, S1PR3, ALDH1A1, VPS13A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, PSAT1, NA NA NA NA NA NA NA NA NA LTS-012 UBQLN1, ANXA1, HNRNPK, IARS, LINC01501, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIR7-1, IDNK, LOC440173, SPATA31C1, FOXB2, NFIL3, NTRK2, ROR2, LOC494127, OMD, OGN, PCA3, PCSK5, GOLM1, SHC3, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, RFK, KIF27, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, RPSAP9, SYK, TLE1, TLE4, ZFAND5, SECISBP2, ZCCHC6, RMI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 GKAP1, ISCA1, ZNF484, CEP78, C9orf64, FGD3, GDA, GNA14) 0.187723596234234 164 0.0739191973242 0.581124432465951 9376 0.301726915285479 1 1 0 -6.98595618628133 LTS-012 NA NA NA NA LTS-012 chr9 95738994 96079955 340962 * c(SUSD3, NINJ1, WNK2, CARD19, FGD3) 0.198000945455003 4 0.0128679187646384 0.793554675523576 396 0.362749659267318 1 1 0 -6.99143056474749 LTS-012 chr9 96079956 99700909 3620954 * c(LINC00476, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, LOC100507346, SLC35D2, PTPDC1, MIRLET7DHG, FAM120AOS, ZNF782, LOC158434, LOC158435, ZNF169, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, FAM120A, HSD17B3, ERCC6L2, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, LOC441454, LOC441455, NUTM2G, C9orf129, PHF2, NUTM2F, BARX1, PTCH1, WNK2, MFSD14B, C9orf3, CDC14B, FBP2) 0.210879942479602 45 0.0819166427756678 0.601655405542834 2671 1.94157544153581 1 1 0 -6.76305648044882 LTS-012 chr9 99700910 99704582 3673 * NUTM2G 0.270494754019878 2 0.117379725676967 0.297009665462337 57 0.219274702971885 4 3 1 -6.86640584138016 LTS-012 chr9 99704583 99711147 6565 * MFSD14C NA 0 NA 1.175 1 NA NA NA NA NA LTS-012 chr9 99711148 99959757 248610 * c(CTSV, GAS2L1P2, MFSD14C) 0.327599081510657 2 0.0480832611206852 0.548503617156699 94 0.240041673772625 3 2 1 -8.36665502736099 LTS-012 chr9 99959758 99961881 2124 * character(0) 0.419 1 NA 0.262370262558108 39 0.151024544215388 0 0 0 -5.76657839800724 LTS-012 chr9 99961882 99961959 78 * character(0) NA 0 NA 0.387 1 NA NA NA NA NA LTS-012 chr9 99961960 101822321 1860362 * c(CCDC180, LOC100499484, ANP32B, COL15A1, TSTD2, ANKS6, FOXE1, TDRD7, LOC286359, NCBP1, TRMO, NANS, TBC1D2, HEMGN, LOC100499484-C9ORF174, TMOD1, CORO2A, XPA, GALNT12, GABBR2, TRIM14) 0.189349885680682 43 0.0726135876530652 0.608255066167342 2053 0.311569779687339 1 1 0 -6.82449097639183 LTS-012 chr9 101822322 101824157 1836 * COL15A1 NA 0 NA 0.488 1 NA NA NA NA NA LTS-012 chr9 101824158 104500621 2676464 * c(MSANTD3-TMEFF1, NAMA, SEC61B, GRIN3A, COL15A1, ALDOB, ERP44, INVS, MURC, STX17-AS1, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, RNF20, BAAT, TGFBR1, ZNF189, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3) 0.181565311771759 24 0.0873518207006021 0.526059224736977 1782 0.226106408879512 1 1 0 -6.84254252524948 LTS-012 chr9 104500622 105405415 904794 * GRIN3A 0.491 1 NA 0.578403153455469 17 0.240792411205415 1 1 0 -5.77826274067572 LTS-012 chr9 105405416 105765567 360152 * CYLC2 0.286 1 NA 0.56574286171155 26 0.156629111156063 1 1 0 -5.76677173381487 LTS-012 chr9 105765568 105766964 1397 * CYLC2 NA 0 NA 0.721 1 NA NA NA NA NA LTS-012 chr9 105766965 105966512 199548 * CYLC2 NA 0 NA 1.52076702415629 39 0.918680294297698 4 NA NA -5.7646165091194 LTS-012 chr9 105966513 105966593 81 * character(0) NA 0 NA 0.526 1 NA NA NA NA NA LTS-012 chr9 105966594 107549313 1582720 * c(SMC2, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, ABCA1, NIPSNAP3A, OR13C9, OR13D1, NA, OR13C2, NIPSNAP3B) 0.402963528928879 25 0.0773288432604549 0.733554717499103 576 0.291470363339592 2 1 1 -7.23063086462122 LTS-012 chr9 107549314 107550182 869 * c(ABCA1, NIPSNAP3B) NA 0 NA 1.172 1 NA NA NA NA NA LTS-012 chr9 107550183 108234328 684146 * c(ABCA1, SLC44A1, NIPSNAP3B, FSD1L) 0.437881863026161 10 0.048845447871606 0.99800085027705 579 0.45837341425201 2 1 1 -6.76976655490472 LTS-012 chr9 108234329 108241521 7193 * FSD1L NA 0 NA 0.664 1 NA NA NA NA NA LTS-012 chr9 108241522 109687288 1445767 * c(MIR548Q, FKTN, TMEM38B, ZNF462, TAL2, FSD1L) 0.411255721804575 11 0.0983203483979329 0.758897747385023 539 0.282005357740693 2 1 1 -7.04801281306431 LTS-012 chr9 109687289 109687330 42 * c(MIR548Q, ZNF462) NA 0 NA 1.051 1 NA NA NA NA NA LTS-012 chr9 109687331 116150657 6463327 * c(FAM225B, MIR548Q, MIR3134, MIR4668, ACTL7B, ACTL7A, AKAP2, PALM2, WDR31, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, ALAD, PTGR1, FKBP15, KIAA0368, TMEM245, FRRS1L, CDC26, TXNDC8, OR2K2, GNG10, FAM225A, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, BSPRY, DNAJC25, FAM206A, DNAJC25-GNG10, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, SUSD1, LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, NA NA NA NA NA NA NA NA NA LTS-012 HDHD3, HSDL2, IKBKAP, CTNNAL1, PRPF4, KLF4, PTBP3) 0.427358428777929 118 0.099408505633684 0.971667492492371 5513 0.463281620703938 2 1 1 -6.84480316322974 LTS-012 NA NA NA NA LTS-012 chr9 116150658 116151191 534 * ALAD NA 0 NA 1.455 1 NA NA NA NA NA LTS-012 chr9 116151192 117074810 923619 * c(KIF12, ZNF618, ALAD, C9orf43, AMBP, POLE3, RGS3, MIR455, COL27A1) 0.456295157480384 22 0.0355532951572255 1.12979738953611 1095 0.504919779156058 2 1 1 -7.15330109643126 LTS-012 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.078 1 NA NA NA NA NA LTS-012 chr9 117085363 117089956 4594 * ORM1 0.498 1 NA 0.260452644813763 50 0.219467824800012 0 0 0 -5.76646920607486 LTS-012 chr9 117089957 117092184 2228 * c(ORM1, ORM2) NA 0 NA 0.637 1 NA NA NA NA NA LTS-012 chr9 117092185 124991112 7898928 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, WHRN, PHF19, FBXW2, LHX6, GGTA1P, GSN, TNC, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, LINC00474, TLR4, TRAF1, C5, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.427824133458325 46 0.120951820966735 1.00571017833419 3872 0.481821107171472 2 1 1 -6.98599638013614 LTS-012 chr9 124991113 125001824 10712 * character(0) NA 0 NA 0.799 1 NA NA NA NA NA LTS-012 chr9 125001825 126028599 1026775 * c(ZBTB6, OR1L8, OR1N2, OR1N1, OR1Q1, RABGAP1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, GPR21, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, PDCL, RC3H2, STRBP, PTGS1, ZBTB26, SNORD90, MIR600HG, MRRF, RBM18) 0.451958402059469 46 0.0337929830065813 0.870183063074891 1573 0.434034531630516 2 1 1 -6.97559410876676 LTS-012 chr9 126028600 127620842 1592243 * c(LOC100129034, MIR181A2HG, NEK6, RPL35, OLFML2A, NR5A1, NR6A1, CRB2, ADGRD2, WDR38, MIR181A2, MIR181B2, STRBP, PSMB7, DENND1A, MIR601, LHX2) 0.450579284731345 32 0.0452575069517077 1.13120940913927 1277 0.566860107457205 2 1 1 -7.00743826252126 LTS-012 chr9 127620843 127622544 1702 * RPL35 NA 0 NA 0.613 1 NA NA NA NA NA LTS-012 chr9 127622545 130210849 2588305 * c(RABEPK, RPL35, ZBTB43, ANGPTL2, GAPVD1, SNORA65, GOLGA1, SCAI, SLC2A8, HSPA5, LMX1B, ZBTB34, PBX3, PPP6C, RPL12, NRON, ZNF79, MAPKAP1, ARPC5L, GARNL3, MVB12B, RALGPS1) 0.440593895323101 37 0.085795500277508 0.94421485376803 2264 0.457033832968597 2 1 1 -6.7608001975829 LTS-012 chr9 130210850 130211636 787 * c(SNORA65, RPL12) NA 0 NA 1.51 1 NA NA NA NA NA LTS-012 chr9 130211637 130697658 486022 * c(SH2D3C, MIR3911, MIR3960, MIR4672, CDK9, PTRH1, PIP5KL1, TTC16, ENG, AK1, FPGS, ST6GALNAC4, TOR2A, CFAP157, ST6GALNAC6, RPL12, FAM129B, STXBP1, DPM2, LRSAM1) 0.471476989909183 9 0.0673902399791279 1.14823366376705 1333 0.60156188775653 2 1 1 -6.9987378377547 LTS-012 chr9 130697659 130982416 284758 * c(SLC25A25-AS1, SLC25A25, DNM1, NAIF1, CIZ1, PTGES2-AS1, LCN2, FAM102A, C9orf16, PTGES2, DPM2) 0.436031506290336 9 0.0261332057820016 0.91855018472549 629 0.363523934497271 2 1 1 -6.76365176833165 LTS-012 chr9 130982417 130984755 2339 * DNM1 0.396 1 NA 0.932828029388136 15 0.2462757455722 2 2 0 -5.7644442795916 LTS-012 chr9 130984756 135118559 4133804 * c(LOC100272217, MIR3154, LOC100506100, LINC00963, MIR219B, LAMC3, ZER1, POMT1, USP20, SLC27A4, CRAT, ASB6, DNM1, TOR1A, ENDOG, DOLK, FNBP1, EXOSC2, NCS1, NUP188, ABL1, PHYHD1, SNORD62A, TRUB2, GLE1, TOR1B, GOLGA2, FAM78A, RAPGEF1, NTMT1, PKN3, QRFP, SWI5, C9orf50, IER5L, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, GPR107, NA NA NA NA NA NA NA NA NA LTS-012 PRDM12, SET, SPTAN1, NUP214, URM1, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, KYAT1, FUBP3, WDR34, MED27, PTGES) 0.386514186635487 104 0.0889370634265239 0.917408790445315 6728 0.433671581354517 2 1 1 -6.88051599980332 LTS-012 NA NA NA NA LTS-012 chr9 135118560 135821182 702623 * c(SPACA9, AK8, SETX, CFAP77, BARHL1, DDX31, TSC1, TTF1, GTF3C4) 0.397056795178105 26 0.0456328660237165 0.751739405229836 1257 1.09010448762198 5 3 2 -7.04187084850804 LTS-012 chr9 135821183 135861950 40768 * GFI1B NA 0 NA 0.95 1 NA NA NA NA NA LTS-012 chr9 135861951 141071732 5209782 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, TUBB4B, UBAC1, OLFM1, AGPAT2, CEL, CELP, SDCCAG3, NOXA1, WDR5, ADAMTS13, CACFD1, SLC2A6, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, SLC34A3, CAMSAP1, C9orf62, C9orf163, NA NA NA NA NA NA NA NA NA LTS-012 MAMDC4, LCN6, DBH, STKLD1, QSOX2, SARDH, ABCA2, FCN1, FCN2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, ABO, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, OBP2B, OBP2A, GLT6D1, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, LCN10, STPG3, NRARP, NOTCH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PAEP, MRPS2, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, REXO4, PTGDS, KCNT1, RALGDS, RPL7A, RXRA, CARD9, FAM163B, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, LHX3, GFI1B, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 TMEM203, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.386993168369075 226 0.0811391459343137 0.938441700697351 10106 0.985489518655443 2 1 1 -6.90470695424088 LTS-012 NA NA NA NA LTS-012 chr9 141071733 141071759 27 * TUBBP5 NA 0 NA 1.023 1 NA NA NA NA NA LTS-012 chr10 94832 94870 39 * TUBB8 0.284 1 NA 2.332 1 NA NA NA NA NA LTS-012 chr10 94871 4882008 4787138 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, TUBB8, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.433790135275865 45 0.0535141820153095 0.961821328047335 1785 0.466699153621023 2 1 1 -6.79795093081589 LTS-012 chr10 4882009 5091015 209007 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.451576993232732 16 0.0569917757224672 0.496432962020535 247 0.313742476712704 2 1 1 -7.23312447038814 LTS-012 chr10 5091016 5120124 29109 * AKR1C3 NA 0 NA 0.912 1 NA NA NA NA NA LTS-012 chr10 5120125 5498265 378141 * c(NET1, AKR1C4, UCN3, AKR1C8P, TUBAL3, AKR1C3) 0.432911834744898 15 0.0466559851721186 0.770162812517015 326 0.349049667608727 2 1 1 -6.77847616517507 LTS-012 chr10 5498266 5498549 284 * NET1 NA 0 NA 1.563 1 NA NA NA NA NA LTS-012 chr10 5498550 5708495 209946 * c(NET1, CALML5, ASB13, CALML3) 0.384632138545482 5 0.106117859005919 1.22923672653862 175 0.477199965521369 3 2 1 -6.76286515331953 LTS-012 chr10 5708496 5807374 98879 * c(GDI2, FAM208B, ASB13) NA 0 NA 0.658323929928863 205 0.295802811110267 1 NA NA -5.78347119923199 LTS-012 chr10 5807375 5807512 138 * GDI2 NA 0 NA 0.937 1 NA NA NA NA NA LTS-012 chr10 5807513 15556788 9749276 * c(PPIAP30, MIR1265, MIR3155A, LINC00707, MIR4480, MIR3155B, OPTN, RPP38, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, IL2RA, IL15RA, ITIH2, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, PFKFB3, PHYH, ANKRD16, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, DCLRE1C, MEIG1, SUV39H2, ECHDC3, NA NA NA NA NA NA NA NA NA LTS-012 ITIH5, FAM107B, CCDC3, TAF3, FBXO18, RBM17, PRPF18, CDC123, NMT2, USP6NL) 0.431181800426268 105 0.0918583756233539 0.919150312500466 4999 0.478637613008458 2 1 1 -6.74735058035401 LTS-012 NA NA NA NA LTS-012 chr10 15556789 17908619 2351831 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, NA, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.401923078894302 10 0.154887629518234 0.765089511650817 1425 0.339223421876695 2 1 1 -7.0508036000712 LTS-012 chr10 17908620 17949528 40909 * c(MRC1, NA, TMEM236) NA 0 NA 0.213 1 NA NA NA NA NA LTS-012 chr10 17949529 18196475 246947 * c(MRC1, NA, TMEM236) NA 0 NA 0.232170927316608 101 0.210439885821473 0 NA NA -5.78306779148004 LTS-012 chr10 18196476 18242113 45638 * c(SLC39A12, MRC1) NA 0 NA 0.606 1 NA NA NA NA NA LTS-012 chr10 18242114 38652508 20410395 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, LOC100129055, SLC39A12-AS1, LOC100130992, MTRNR2L7, MIR1915, ZNF33BP1, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ENKUR, ARMC3, ZNF25, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, ITGB1, NA NA NA NA NA NA NA NA NA LTS-012 PTCHD3, KIF5B, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, ZNF248, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CACNB2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, PLXDC2, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12, SPAG6) 0.413543970188019 187 0.0974187739340139 0.821296003441951 8561 0.48863649243715 2 1 1 -7.13080130777261 LTS-012 NA NA NA NA LTS-012 chr10 38652509 38740384 87876 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 0.653194607791649 43 0.265603587665398 1 NA NA -5.78350943536319 LTS-012 chr10 42379861 42379879 19 * character(0) 0.448 1 NA 0.430247501190373 2 0.147785317267988 1 1 0 -5.76444289750048 LTS-012 chr10 42379880 45500221 3120342 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, C10orf10, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, ZNF239, RASSF4, LINC00839, BMS1) 0.424155142463965 58 0.0662232310744371 0.839197647140884 1481 0.412599277602975 2 1 1 -6.78746848477453 LTS-012 chr10 45500222 45919616 419395 * c(RSU1P2, MIR3156-1, ALOX5, ANKRD30BP3, ZNF22, OR13A1) 0.477 1 NA 0.754733706320567 91 0.26931523485777 2 2 0 -5.86699176968526 LTS-012 chr10 45919617 46961787 1042171 * c(AGAP4, MARCH8, ALOX5, FAM21C, PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15, ZFAND4) 0.419261623654092 3 0.0775263396100534 0.81674449875981 395 0.484458122338438 2 1 1 -6.76859002023713 LTS-012 chr10 46961788 47915918 954131 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, NA, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.438780414619029 40 0.0766617570891771 1.14628579288015 299 0.828126237644674 2 1 1 -6.79005858909033 LTS-012 chr10 47915919 47933885 17967 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.128 1 NA NA NA NA NA LTS-012 chr10 47933886 48370491 436606 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.43889567895079 40 0.233646873590171 1 NA NA -6.0235631282432 LTS-012 chr10 48370492 51026705 2656214 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.40439987319198 60 0.106850077131703 0.901607731207949 2260 0.507969814852557 2 1 1 -6.76787265812041 LTS-012 chr10 51026706 51579329 552624 * c(MSMB, NA, AGAP7P, NA, PARGP1, NCOA4, PARG) NA 0 NA 1.04757158602461 126 0.712707145048494 2 NA NA -5.77993784145483 LTS-012 chr10 51579330 51623061 43732 * c(TIMM23, NA, NCOA4, PARG) 0.485 1 NA 0.761144084260397 117 0.264519611401116 2 2 0 -5.77459900205328 LTS-012 chr10 51623062 59986974 8363913 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, NA, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, PARG) 0.427945761907807 42 0.0585404006935088 0.718859673811681 1355 0.351217373716352 2 1 1 -8.27080815879994 LTS-012 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.344 1 NA NA NA NA NA LTS-012 chr10 59997544 70940191 10942648 * c(MIR1296, MRLN, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, SIRT1, IPMK, HERC4, KIF1BP, LINC01553, ANK3, CTNNA3, NRBF2, ANXA2P3, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, CISD1, DNAJC12, PBLD, SUPV3L1, SNORD98, TFAM, FAM133CP, UBE2D1, DDX50, BICC1, CCDC6, TET1, SLC25A16, ARID5B, PHYHIPL, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A, CDK1, RHOBTB1) 0.43141216745437 102 0.0520858655567698 0.819686859502526 5149 0.398551973491484 2 1 1 -7.05665357928557 LTS-012 chr10 70940192 70940210 19 * SUPV3L1 NA 0 NA 1.10554158507287 2 0.559321463918559 3 NA NA -5.76441058166095 LTS-012 chr10 70940211 70992664 52454 * c(SUPV3L1, HKDC1) 0.416 1 NA 0.983944411330738 97 0.557860263760703 2 2 0 -5.76526170891376 LTS-012 chr10 70992665 73856898 2864234 * c(ANAPC16, COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, HKDC1, AIFM2, SGPL1, CHST3, SPOCK2) 0.432207772556159 99 0.0550145274193068 1.00862391249129 3479 0.504342732145158 2 1 1 -6.82423712318991 LTS-012 chr10 73856899 74114849 257951 * c(ANAPC16, ASCC1, DDIT4, DNAJB12) 0.477 1 NA 0.855951094931797 207 0.378872582969498 2 2 0 -5.76685054019199 LTS-012 chr10 74114850 74767575 652726 * c(MIR1256, MIR4676, MICU1, OIT3, P4HA1, DNAJB12, PLA2G12B, MCU) 0.135 1 NA 0.882603605807978 323 0.340750337367144 2 2 0 -5.76537582988888 LTS-012 chr10 74767576 75277271 509696 * c(ECD, MSS51, CFAP70, USP54, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB) 0.232130704966986 7 0.0877949450763105 0.808708642571689 988 0.415207721416148 1 1 0 -7.08432985277993 LTS-012 chr10 75277272 81273682 5996411 * c(DLG5-AS1, ZNF503-AS2, LINC00856, PPIF, POLR3A, CHCHD1, COMTD1, ADK, SAMD8, EIF5AL1, USP54, FUT11, ZCCHC24, ZSWIM8, KAT6B, ZNF503-AS1, AP3M1, GLUD1P3, ZMIZ1-AS1, DUPD1, KCNMA1, C10orf55, LINC00595, DUSP13, PLAU, ZMIZ1, MYOZ1, RPS24, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, C10orf11, ZNF503, NDST2, DLG5, SEC24C) 0.383711504614664 44 0.0526364530957698 1.03325593533127 3312 0.467833664664363 3 2 1 -7.34081882367984 LTS-012 chr10 81273683 81275777 2095 * EIF5AL1 0.385 1 NA 0.467082148679646 58 0.205246453746611 1 1 0 -5.76532606400727 LTS-012 chr10 81275778 81275793 16 * EIF5AL1 NA 0 NA 0.811 1 NA NA NA NA NA LTS-012 chr10 81275794 89685250 8409457 * c(KLLN, BMS1P21, GRID1-AS1, MIR4678, NRG3, ADIRF, LDB3, AGAP11, CFL1P1, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, WAPL, LRIT1, GHITM, GLUD1, GRID1, ANXA11, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00857, LINC00863, MIR346, CCSER2, FAM35A, PTEN, RGR, LOC642361, FAM25A, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, MMRN2, TMEM254, TSPAN14, FAM213A, DYDC2, ATAD1, MBL1P, NA NA NA NA NA NA NA NA NA LTS-012 PAPSS2, CDHR1, OPN4, MINPP1) 0.383043337497911 115 0.0805071520149174 0.971059215792855 3306 0.531809704771798 2 1 1 -7.04017637122338 LTS-012 NA NA NA NA LTS-012 chr10 89685251 93624740 3939490 * c(HECTD2-AS1, FAS-AS1, MIR4679-1, MIR4679-2, LINC00502, RPP30, ANKRD22, NUDT9P1, LIPJ, HECTD2, IFIT5, ANKRD1, FLJ37201, HTR7, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, PPP1R3C, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, LINC00865, TNKS2, PCGF5, LIPF, CH25H, KIF20B) 0.392286501671197 61 0.0881432732091443 0.833003221010628 2569 0.428312282048188 2 1 1 -6.91308138195106 LTS-012 chr10 93624741 105819163 12194423 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ACTR1A, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, NA NA NA NA NA NA NA NA NA LTS-012 CYP26A1, NKX2-3, SLC35G1, DNTT, FGF8, CPEB3, NT5C2, PDCD11, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, FFAR4, CYP26C1, IDE, KIF11, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, EXOC6, CCNJ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 MARCH5, CNNM2, WBP1L, CRTAC1, CEP55, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, FBXW4, SLIT1, SNORA12, TAF5, MIR608, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, TNKS2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, BTAF1, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, ENTPD1, SH3PXD2A, SLK, ZNF518A) 0.37981597994322 300 0.0872587341700715 0.99783579342526 15296 0.531470456432749 2 1 1 -7.2032648377749 LTS-012 NA NA NA NA LTS-012 chr10 105819164 114577478 8758315 * c(MIR4295, ADD3-AS1, MIR4680, MIR4482, SMNDC1, SORCS1, GSTO2, SFR1, ADD3, COL17A1, VTI1A, ADRA2A, CFAP58, DUSP5, SORCS3, PDCD4, RBM20, PDCD4-AS1, GUCY2GP, MXI1, ACSL5, GPAM, ZDHHC6, RPL13AP6, MIR609, TECTB, XPNPEP1, CFAP43, SHOC2, ITPRIP, SMC3, BBIP1, GSTO1) 0.357153136237779 35 0.124882432106119 0.909968339195602 2808 0.548772710984424 2 1 1 -6.93471618972393 LTS-012 chr10 114577479 114926665 349187 * c(VTI1A, TCF7L2) 0.397254953161348 3 0.0526339560866683 1.39069351464236 165 0.682876116214415 5 3 2 -6.78786640538434 LTS-012 chr10 114926666 124817815 9891150 * c(MIR2110, MIR3941, MIR3663, FAM24B-CUZD1, MIR4483, MIR4682, MIR4681, TACC2, PRDX3, VAX1, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, PDZD8, PNLIPRP3, SFXN4, TRUB1, C10orf82, CACUL1, ADRB1, DMBT1, EMX2OS, PLPP4, FAM24B, EMX2, FGFR2, RAB11FIP2, INPP5F, CASC2, HSPA12A, ATRNL1, GFRA1, WDR11-AS1, PRLHR, GRK5, HABP2, KCNK18, VWA2, NANOS1, ACADSB, NHLRC2, CCDC172, DMBT1P1, ENO4, ARMS2, ABLIM1, C10orf120, LOC399815, NA NA NA NA NA NA NA NA NA LTS-012 NRAP, CUZD1, PNLIP, PNLIPRP1, PNLIPRP2, NSMCE4A, CCDC186, WDR11, TDRD1, HTRA1, SHTN1, FAM160B1, PLEKHA1, RGS10, FAM204A, SNORA19, IKZF5, SLC18A2, TCF7L2, TIAL1, MCMBP, PLEKHS1, C10orf88, CASP7, AFAP1L2, EIF3A, BAG3, DCLRE1A) 0.37763270458461 116 0.0852628614768845 0.951969799792705 7234 0.496823532450984 2 1 1 -7.03449617509074 LTS-012 NA NA NA NA LTS-012 chr10 124817816 124895435 77620 * character(0) NA 0 NA 1.557 1 NA NA NA NA NA LTS-012 chr10 124895436 126471504 1576069 * c(CPXM2, GPR26, HMX2, HMX3, NKX1-2, METTL10, OAT, CHST15, LHPP, BUB3, FAM53B) 0.402059909574651 23 0.049163275602671 1.14330717868921 938 0.649381970769036 2 1 1 -7.05157092514619 LTS-012 chr10 126471505 126691660 220156 * c(CTBP2, FAM175B, METTL10, ZRANB1, FAM53B) 0.341001455347617 9 0.13501481400202 0.671147911956401 311 0.286029481755203 2 1 1 -7.11752128294891 LTS-012 chr10 126691661 127265374 573714 * c(TEX36-AS1, MIR4296, CTBP2, TEX36) 0 1 NA 0.743181896779808 81 0.257101522557208 2 2 0 -5.94462658719439 LTS-012 chr10 127265375 133795499 6530125 * c(TEX36-AS1, MIR378C, MIR4297, MIR4484, LINC00601, FANK1-AS1, GLRX3, C10orf90, MMP21, CTAGE7P, CLRN3, DOCK1, EBF3, TCERG1L, EDRF1, LOC283038, TEX36, LINC00959, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, DHX32, PPP2R2D, BCCIP, PTPRE, NPS, FAM196A, BNIP3, UROS, ADAM12, FANK1) 0.18511809427575 75 0.0807708871823024 0.730999417783212 2539 0.411418693145464 2 2 0 -7.94426117731361 LTS-012 chr10 133795500 133918107 122608 * character(0) NA 0 NA 1.625 1 NA NA NA NA NA LTS-012 chr10 133918108 134693137 775030 * c(DPYSL4, C10orf91, PWWP2B, JAKMIP3, STK32C, INPP5A, CFAP46, LRRC27, NKX6-2) 0.139152448217987 30 0.0609799288630114 0.886161546943511 849 0.573426319426218 2 2 0 -6.79146038054033 LTS-012 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.516 1 NA NA NA NA NA LTS-012 chr10 134694406 134756359 61954 * CFAP46 0.0830891285740166 2 0.029698484809835 0.462137000661731 175 0.199693950234509 3 3 0 -7.53546366109777 LTS-012 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.383 1 NA NA NA NA NA LTS-012 chr10 134884462 135279465 395004 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1) 0.153280519753588 33 0.054926931491121 0.854616889372428 1245 0.529475138641653 2 2 0 -6.94678646763661 LTS-012 chr10 135279466 135473026 193561 * c(CYP2E1, SPRNP1, FRG2B, SCART1, SYCE1) 0.358306591513229 5 0.00801249024960406 0.589054673552275 224 0.325098181068798 3 2 1 -7.34929719960453 LTS-012 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.324 1 NA NA NA NA NA LTS-012 chr11 193025 193096 72 * SCGB1C1 0.237 1 NA 0.543604797366375 3 0.21268834790212 1 1 0 -5.76441065648115 LTS-012 chr11 193097 321022 127926 * c(IFITM3, IFITM2, ODF3, SCGB1C1, NLRP6, SIRT3, IFITM5, BET1L, PSMD13, RIC8A, PGGHG, IFITM1) 0.174215145318748 42 0.0848218773140523 0.587182397980647 675 0.430742927508807 1 1 0 -6.76544510200144 LTS-012 chr11 321023 369802 48780 * B4GALNT4 NA 0 NA 1.164 1 NA NA NA NA NA LTS-012 chr11 369803 1010649 640847 * c(MIR210HG, DEAF1, PKP3, LRRC56, LOC143666, AP2A2, LOC171391, DRD4, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, MIR210, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PHRF1, SIGIRR, RNH1, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, RASSF7, PTDSS2, CD151) 0.188687577842345 72 0.0417990853581297 0.707414623616281 2326 0.471749724313253 1 1 0 -6.83914882685485 LTS-012 chr11 1010650 1016834 6185 * c(AP2A2, MUC6) 0.279 1 NA 0.691209872159805 83 0.267354528157134 1 1 0 -5.76684632720549 LTS-012 chr11 1016835 1018175 1341 * MUC6 0.343026892638494 36 0.0868717125676963 1.0655061580527 75 0.525613215446732 9 6 3 -6.73674092262887 LTS-012 chr11 1018176 1018182 7 * MUC6 0.221 1 NA 2.139 1 NA NA NA NA NA LTS-012 chr11 1018183 1212846 194664 * c(MUC2, MUC6, MUC5B) 0.186901468487814 37 0.0651350986878893 0.757148886166536 509 0.848858395165488 1 1 0 -6.75471784832932 LTS-012 chr11 1212847 1213000 154 * MUC5B 0.302 1 NA 0.767585500995724 3 0.61609198447418 2 2 0 -5.76441606182493 LTS-012 chr11 1213001 1213566 566 * MUC5B 0.372222328966022 21 0.0770499219739415 1.21433509096829 38 0.625267237888466 11 7 4 -6.73522218416641 LTS-012 chr11 1213567 1215698 2132 * MUC5B 0.211 1 NA 0.649705724802444 29 0.430601129251092 1 1 0 -5.76457528295003 LTS-012 chr11 1215699 2930395 1714697 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.210511974835268 107 0.0802696324599569 0.745981570491286 2389 0.507243429479762 1 1 0 -7.08437954321185 LTS-012 chr11 2930396 2930987 592 * SLC22A18 0.172 1 NA 0.828101372006282 7 0.202938766274812 2 2 0 -5.76446615536727 LTS-012 chr11 2930988 3239817 308830 * c(OSBPL5, MRGPRG-AS1, MRGPRG, NAP1L4, SLC22A18, SNORA54, PHLDA2, CARS) 0.165940468252228 6 0.0303496293222833 0.677144309548698 466 0.302472508357163 1 1 0 -7.27149249180382 LTS-012 chr11 3239818 4730983 1491166 * c(LOC100506082, MIR4687, OR7E12P, MRGPRE, ART5, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, PGAP2, MRGPRG-AS1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, ART1, NUP98, TRIM68, CHRNA10, RRM1, TSSC2, TRIM21, STIM1, TRPC2, ZNF195, OR51E2) 0.168190810863589 45 0.0537510629446225 0.581899094103828 1431 0.344531382344512 1 1 0 -6.87927959139861 LTS-012 chr11 4730984 5510276 779293 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR51T1, OR51A4, OR51A2, MMP26, OR51G1, OR51B4, OR51B2, OR51G2) 0.204386123619317 36 0.0719211373658676 0.428970883825139 961 0.185165971201043 1 1 0 -7.5523571548316 LTS-012 chr11 5510277 6226818 716542 * c(TRIM22, TRIM6, OR52W1, OR56A4, OR56A1, UBQLNL, C11orf42, OR56B4, OR52B2, OR51B5, HBE1, HBG2, OR52L1, OR52B6, OR56B1, OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM6-TRIM34, UBQLN3, TRIM34, OR52N1, TRIM5) 0.181599422886844 54 0.0816342510432737 0.511545269958291 1038 0.280803923867461 1 1 0 -6.78452698892311 LTS-012 chr11 6226819 6226917 99 * C11orf42 NA 0 NA 0.462 1 NA NA NA NA NA LTS-012 chr11 6226918 6702187 475270 * c(TRIM3, PRKCDBP, TPP1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, MRPL17, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.182480954054008 23 0.0495692512747243 0.60958992195169 1879 0.253396032839878 1 1 0 -6.7997313046876 LTS-012 chr11 6702188 7092423 390236 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, NLRP14, OR2AG2, OR10A2, GVINP1, MRPL17, ZNF214, ZNF215, OR6A2) 0.194481634486812 23 0.0479538645213255 0.424621290154784 597 0.19226751756139 1 1 0 -7.16437301450958 LTS-012 chr11 7092424 13375859 6283436 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, IPO7, LYVE1, OR5P2, OR5P3, ADM, SYT9, EIF4G2, SWAP70, DENND5A, OR5E1P, OR10A3, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, GALNT18, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, CYB5R2, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, RPL27A, SNORA3A, LOC644656, NA NA NA NA NA NA NA NA NA LTS-012 RASSF10, STK33, ST5, SNORA23, SNORA3B, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, RIC3, SBF2, PPFIBP2, MICALCL, EIF3F, MICAL2, CTR9, TRIM66) 0.181095653671778 136 0.0626309521369214 0.588411148949667 5518 0.320987922170923 1 1 0 -6.86819909989471 LTS-012 NA NA NA NA LTS-012 chr11 13375860 13375958 99 * ARNTL NA 0 NA 0.496 1 NA NA NA NA NA LTS-012 chr11 13375959 15096629 1720671 * c(SPON1, CYP2R1, COPB1, RRAS2, ARNTL, PDE3B, PSMA1, PTH, CALCA, CALCB, FAR1, BTBD10) 0.178217599880139 8 0.0914705260882277 0.488106583222089 916 0.238038087327814 1 1 0 -7.04841035897778 LTS-012 chr11 15096630 20679415 5582786 * c(LOC100126784, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, NAV2-AS5, PRMT3, HTATIP2, OR7E14P, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, DBX1, PLEKHA7, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, LDHA, LDHC, NAV2-AS4, MYOD1, NUCB2, LOC494141, PIK3C2A, ZDHHC13, UEVLD, SOX6, RPS13, SAA1, SAA2, SAA3P, SAA4, ABCC8, TPH1, TSG101, CALCB, E2F8, NA NA NA NA NA NA NA NA NA LTS-012 CSRP3, PTPN5, NAV2, SLC6A5) 0.182702879139871 96 0.0717018192042084 0.630856084974776 4880 0.6664547002091 1 1 0 -6.86305299051956 LTS-012 NA NA NA NA LTS-012 chr11 20679416 27680744 7001329 * c(CCDC179, LINC00678, MUC15, SLC5A12, ANO5, FANCF, SVIP, GAS2, LUZP2, FIBIN, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, BBOX1, CCDC34) 0.197499537195626 33 0.0870811838215213 0.533998324852963 1862 0.243661751069441 1 1 0 -6.85293560957969 LTS-012 chr11 27680745 28355071 674327 * c(METTL15, BDNF-AS, BDNF, MIR610, KIF18A) NA 0 NA 0.510203853260278 263 0.33992727700613 1 NA NA -5.79076731011704 LTS-012 chr11 30031256 30255185 223930 * c(FSHB, KCNA4) 0.398 1 NA 0.872243131300776 87 0.339792237258991 2 2 0 -5.76537049533096 LTS-012 chr11 30255186 31392397 1137212 * c(DCDC5, DNAJC24, ARL14EP, FSHB, DCDC1, MPPED2) 0.423589820588647 11 0.0595751626099333 0.954750412562987 543 0.538257895354775 2 1 1 -6.74929967994708 LTS-012 chr11 31392398 31395606 3209 * DNAJC24 NA 0 NA 2.185 1 NA NA NA NA NA LTS-012 chr11 31395607 36422792 5027186 * c(C11orf91, MIR3973, MIR1343, HIPK3, EIF3M, DNAJC24, LDLRAD3, CSTF3, IMMP1L, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, WT1-AS, TRIM44, NAT10, TCP11L1, RCN1, SLC1A2, WT1, PRRG4, QSER1, PRR5L, PDHX, CAT, DEPDC7, CD44, CD59) 0.338681095782806 105 0.0567750735301943 1.28044203415001 4215 0.680315955718288 3 2 1 -6.83084973201434 LTS-012 chr11 36422793 36458997 36205 * PRR5L 0.418 1 NA 1.45632823170271 19 0.4275023682435 4 4 0 -5.76519832516289 LTS-012 chr11 36458998 36510263 51266 * c(TRAF6, PRR5L) NA 0 NA 1.36715267039433 108 0.482806077133455 3 NA NA -5.76569282518044 LTS-012 chr11 36510264 47508699 10998436 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C11orf74, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, RAPSN, ALX4, SPI1, SNORD67, NA NA NA NA NA NA NA NA NA LTS-012 TRAF6, SEC14L1P1, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.45530184881972 97 0.0550672796087219 1.04253579172788 5172 0.480999783661289 2 1 1 -7.43422199738738 LTS-012 NA NA NA NA LTS-012 chr11 47508700 48346458 837759 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PTPRJ, AGBL2) 0.443752140610281 31 0.0375745853252646 0.879139386828406 1158 0.599074875098761 2 1 1 -6.81092362026136 LTS-012 chr11 48346459 48346513 55 * OR4C3 0.335 1 NA 0.688023300913218 3 0.449603158351896 1 1 0 -5.76441734248594 LTS-012 chr11 48346514 48453825 107312 * c(OR4C3, OR4C45) 0.364142363737657 105 0.0660986705545902 1.08632792472513 193 0.528781879277991 3 2 1 -6.73842141257837 LTS-012 chr11 48453826 51516257 3062432 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.434217962309076 21 0.0501573713900749 0.750728130236062 474 0.459607483824921 2 1 1 -7.00272967011525 LTS-012 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.528718557891916 6 0.294743730495946 1 NA NA -5.76461820029941 LTS-012 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.486 1 NA 0.454844096870934 19 0.160404113202136 1 1 0 -5.83555613907831 LTS-012 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.449147374452077 8 0.0323198302682955 0.70799623882936 83 0.262236348432143 2 1 1 -7.04338838249911 LTS-012 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.423 1 NA NA NA NA NA LTS-012 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.30338342750096 67 0.0772221299215164 0 NA NA -6.28971370257445 LTS-012 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.671 1 NA NA NA NA NA LTS-012 chr11 55432533 56949537 1517005 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51) 0.387469352230282 51 0.0699856680005999 0.681551359351478 1033 0.306887650339478 2 1 1 -7.60447262213742 LTS-012 chr11 56949538 57417173 467636 * c(PRG3, APLNR, LRRC55, SMTNL1, YPEL4, TIMM10, SLC43A3, RTN4RL2, MIR130A, P2RX3, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.434218501062209 32 0.0461414375379064 1.10129379420402 1083 0.501848088939157 2 1 1 -6.7838310416917 LTS-012 chr11 57417174 57424465 7292 * YPEL4 NA 0 NA 0.783 1 NA NA NA NA NA LTS-012 chr11 57424466 60497058 3072593 * c(MIR3162, TMX2-CTNND1, GLYAT, CLP1, CNTF, CTNND1, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A2, DTX4, MS4A6E, ZDHHC5, GIF, SELENOH, LOC283194, LINC00301, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, NA NA NA NA NA NA NA NA NA LTS-012 STX3, TCN1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, GLYATL1, MS4A1, MS4A3, LPXN) 0.444899160916904 57 0.0499267885060347 0.838156543144762 3201 0.396966047646431 2 1 1 -6.83928096340276 LTS-012 NA NA NA NA LTS-012 chr11 60497059 60497145 87 * character(0) 0.463 1 NA 1.87 1 NA NA NA NA NA LTS-012 chr11 60497146 61687454 1190309 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, TKFC, DKFZP434K028, PRPF19, MS4A10, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, SYT7, CD5, CD6, FADS2) 0.415289243434248 37 0.148764082534234 1.02268664352128 3046 0.523217435991895 2 1 1 -6.78306447107564 LTS-012 chr11 61687455 61736056 48602 * c(FTH1, RAB3IL1, BEST1) NA 0 NA 0.875614227449083 133 0.418575792973544 2 NA NA -5.76451309748207 LTS-012 chr11 61736057 61895547 159491 * INCENP NA 0 NA 1.262 1 NA NA NA NA NA LTS-012 chr11 61895548 61914369 18822 * INCENP 0.32 1 NA 1.64929325137367 81 0.70246754065865 4 4 0 -5.76445242850077 LTS-012 chr11 61914370 62284060 369691 * c(SCGB1D2, SCGB1D1, INCENP, SCGB1D4, SCGB2A1, SCGB2A2, SCGB1A1, AHNAK, ASRGL1) 0.269527519063883 3 0.0133166562369588 1.36518022886812 277 0.68348354201878 8 6 2 -7.00608527984984 LTS-012 chr11 62284061 62301083 17023 * AHNAK 0.361 1 NA 0.947628077937195 282 0.242229297143094 2 2 0 -5.76492074831894 LTS-012 chr11 62301084 62301087 4 * AHNAK NA 0 NA 1.263 1 NA NA NA NA NA LTS-012 chr11 62301088 64112183 1811096 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, STIP1, PLA2G16, CHRM1, SLC22A9, HRASLS5, COX8A, C11orf84, EEF1G, MARK2, ESRRA, LRRN4CL, HNRNPUL2, FKBP2, GANAB, SNHG1, FLRT1, EML3, PRDX5, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, DNAJC4, TMEM179B, SLC22A25, SLC22A10, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, OTUB1, GPR137, BAD, RARRES3, ROM1, TUT1, SLC3A2, NA NA NA NA NA NA NA NA NA LTS-012 C11orf95, STX5, SNORA57, VEGFB, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, INTS5, FERMT3, TRPT1, NUDT22, LGALS12, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.352513793384414 36 0.0627234039001822 1.34809806029595 4615 0.706149208301301 3 2 1 -6.75933965838973 LTS-012 NA NA NA NA LTS-012 chr11 64112184 64534606 422423 * c(MIR1237, LOC100996455, RASGRP2, SLC22A12, CCDC88B, SLC22A11, PYGM, SF1, RPS6KA4, NRXN2) 0.34231686195871 2 0.0579827560572969 1.66804268624384 920 0.854299542419862 6 4 2 -6.77160414719888 LTS-012 chr11 64534607 73372949 8838343 * c(NAALADL1, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR548K, MIR3165, MIR3664, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, STARD10, YIF1A, EHD1, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, MRGPRD, MRGPRF, ARAP1, CATSPER1, CPT1A, CST6, CTSW, GRK2, GPHA2, DHCR7, CTTN, FAU, MRPL21, TPCN2, NA NA NA NA NA NA NA NA NA LTS-012 ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, ATG2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, POLA2, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, BRMS1, ANAPC15, MYEOV, NPAS4, MAJIN, SLC25A45, NEAT1, ALG1L9P, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, MALAT1, KRTAP5-9, KRTAP5-10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SPDYC, GPR152, DOC2GP, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, PC, GAL, KMT5B, PDE2A, CABP2, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, CDC42BPG, PACS1, CABP4, CD248, CORO1B, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PLEKHB1, MAP4K2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 RAD9A, RBM4, CCND1, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, SF1, ZFPL1, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, RBM4B, FRMD8, RNASEH2C, EIF1AD, SYVN1, RELT, PPFIA1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ) 0.354942059671211 213 0.0830476604034409 1.37881747221295 15372 0.677453209527371 3 2 1 -6.86583399535315 LTS-012 NA NA NA NA LTS-012 chr11 73372950 82641317 9268368 * c(KCNE3, MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, PLEKHB1, NA NA NA NA NA NA NA NA NA LTS-012 RAB6A, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.354147253417692 161 0.0693492768885801 1.30222566192983 6463 0.646260780036596 3 2 1 -6.77178802046789 LTS-012 NA NA NA NA LTS-012 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.569 1 NA NA NA NA NA LTS-012 chr11 82642812 82668550 25739 * DDIAS 0.317167906309047 2 0.0466690475583121 0.595571495760738 63 0.204899879388634 4 3 1 -7.35146705960153 LTS-012 chr11 82668551 82668624 74 * DDIAS NA 0 NA 1.151 1 NA NA NA NA NA LTS-012 chr11 82668625 95595387 12926763 * c(NAALAD2, MIR1304, SNORA70E, RAB30-AS1, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, DLG2, FOLH1B, DDIAS, CCDC83, CCDC89, ENDOD1, RAB38, PANX1, FUT4, CHORDC1, RAB30, C11orf54, GRM5, ANKRD42, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, PCF11, SYTL2, ANKRD49, KDM4D, TMEM126B, SMCO4, TRIM49, CREBZF, NA NA NA NA NA NA NA NA NA LTS-012 CCDC90B, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TYR, TAF1D, PICALM, FZD4, TMEM126A, CEP295, OR7E2P, EED, MTMR2, MED17, CEP57) 0.354533941674126 119 0.0746276557058735 1.13139959914474 6954 0.604512600559704 3 2 1 -6.90702652488387 LTS-012 NA NA NA NA LTS-012 chr11 95595388 96076120 480733 * c(MIR1260B, MAML2, MTMR2) NA 0 NA 1.29409805421459 184 0.704598238406775 3 NA NA -5.76551881801204 LTS-012 chr11 96076121 99690428 3614308 * c(JRKL-AS1, CNTN5, CCDC82, MAML2, JRKL) 0.481 1 NA 0.791650548918997 158 0.393210009160139 2 2 0 -5.97814894098192 LTS-012 chr11 99690429 106849556 7159128 * c(WTAPP1, MIR3920, CASP12, MIR4693, LOC101054525, YAP1, CARD16, TMEM123, ARHGAP42, KBTBD3, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, PGR, CNTN5, CEP126, CARD18, AASDHPPT, MMP27, LOC643733, TRPC6, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, C11orf70, MMP20) 0.421509781949706 83 0.0684952128371353 0.871103463396264 3822 0.443365469075212 2 1 1 -6.76227782764794 LTS-012 chr11 106849557 106856746 7190 * GUCY1A2 NA 0 NA 1.364 1 NA NA NA NA NA LTS-012 chr11 106856747 109297504 2440758 * c(CWF19L2, KDELC2, C11orf65, DDX10, EXPH5, GUCY1A2, ACAT1, C11orf87, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, LOC643923, SLN, CUL5, ALKBH8) 0.382611676744503 17 0.111056258927891 1.03476733845759 1962 0.560483223717601 3 2 1 -6.90310877480755 LTS-012 chr11 109297505 110100901 803397 * c(C11orf87, RDX, ZC3H12C) 0.348562992298016 3 0.0984344113272047 0.739158410514328 294 0.651562079416153 3 2 1 -7.03090814581935 LTS-012 chr11 110100902 110101038 137 * RDX NA 0 NA 1.107 1 NA NA NA NA NA LTS-012 chr11 110101039 113200709 3099671 * c(LOC100132078, NCAM1-AS1, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, FDX1, SIK2, TIMM8B, HSPB2, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, PTS, RDX, SDHD, C11orf1, ALG9, BCO2, DIXDC1, FDXACB1) 0.434757387275106 32 0.0401651705762512 1.02951600241841 2489 0.515065814294362 2 1 1 -6.86967297448836 LTS-012 chr11 113200710 113209428 8719 * TTC12 0.5 1 NA 0.860711353866217 11 0.229406348489471 2 2 0 -5.76458578456335 LTS-012 chr11 113209429 114270720 1061292 * c(MIR4301, DRD2, ANKK1, HTR3A, NNMT, C11orf71, TTC12, USP28, CLDN25, ZBTB16, TMPRSS5, HTR3B, ZW10) 0.436747632842476 22 0.0414381090678241 1.10967497768158 916 0.570048314901234 2 1 1 -6.83488969206648 LTS-012 chr11 114270721 114578494 307774 * c(RBM7, NXPE1, NXPE2, REXO2, C11orf71, NXPE4) 0.381758201264387 22 0.0871359091687616 0.793017227462366 415 0.354809806025395 2 1 1 -6.93526624263129 LTS-012 chr11 114578495 114578652 158 * character(0) NA 0 NA 1.258 1 NA NA NA NA NA LTS-012 chr11 114578653 123624294 9045642 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4493, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, TBCEL, TMEM136, OAF, CEP164, PHLDB1, ARHGEF12, SIK3, BACE1, TRIM29, CADM1, SLC37A4, RNF214, POU2F3, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, HSPA8, APOA1, APOA4, CCDC84, LOC341056, APOC3, IL10RA, ARCN1, BSX, OR6X1, NA NA NA NA NA NA NA NA NA LTS-012 MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, SCN3B, VPS11, CRTAM, TMPRSS4, IFT46, DSCAML1, GRAMD1B, NECTIN1, RPS25, SC5D, SCN2B, SCN4B, ABCG4, CXCR5, LOC649133, RPL23AP64, SORL1, TAGLN, TECTA, THY1, UPK2, ZNF202, RNF26, NLRX1, CLMP, PDZD3, C11orf63, MFRP, TMPRSS13, BUD13, TMEM25, UBASH3B, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ) 0.4124040749662 200 0.0789914083172322 1.13686024653411 9947 0.667188068865877 3 2 1 -7.06618794652564 LTS-012 NA NA NA NA LTS-012 chr11 123624295 124502183 877889 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A, TBRG1) 0.375507185548225 47 0.0674754143734284 0.91636667041181 854 0.401089456030191 3 2 1 -7.04464613105179 LTS-012 chr11 124502184 124502253 70 * TBRG1 NA 0 NA 1.027 1 NA NA NA NA NA LTS-012 chr11 124502254 124967678 465425 * c(TMEM218, SLC37A2, HEPACAM, VSIG2, NRGN, SPA17, SIAE, ROBO4, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM) 0.402491399045595 22 0.0412252811939932 1.24506250094425 1133 0.573819907550905 5 3 2 -6.8887590470014 LTS-012 chr11 124967679 125301249 333571 * c(TMEM218, PKNOX2) 0 1 NA 1.21171770257308 117 1.10320333136419 3 3 0 -5.76449035990785 LTS-012 chr11 125301250 125660808 359559 * c(PATE3, CHEK1, PATE1, STT3A, PATE2, ACRV1, PKNOX2, EI24, FEZ1) 0.257496286976279 16 0.221416613348381 1.17535041634094 664 0.826408334899568 4 3 1 -6.76917996628344 LTS-012 chr11 125660809 125765210 104402 * c(PATE3, HYLS1, PATE4, PUS3) 0.485 1 NA 1.12697685789159 79 0.391481694635476 3 3 0 -5.76806471379967 LTS-012 chr11 125765211 126139313 374103 * c(HYLS1, DDX25, CDON, FOXRED1, SRPRA, FAM118B, PUS3, RPUSD4) 0.405823690694665 26 0.056615355351163 1.11431947626853 672 0.575040350101777 2 1 1 -6.87362762598528 LTS-012 chr11 126139314 126163014 23701 * c(TIRAP, FOXRED1) NA 0 NA 1.32361166451432 90 0.693548774148111 3 NA NA -5.76453983685724 LTS-012 chr11 126163015 126176578 13564 * c(TIRAP, DCPS) 0.157 1 NA 0.911167015918165 53 0.378763995128636 2 2 0 -5.764422775504 LTS-012 chr11 126176579 134856661 8680083 * c(LOC100128239, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, VPS26B, GLB1L3, TMEM45B, ADAMTS15, ETS1, C11orf45, SPATA19, IGSF9B, FLI1, NCAPD3, ACAD8, B3GAT1, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, ZBTB44, THYN1, APLP2, KCNJ1, KCNJ5, ST3GAL4-AS1, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, TP53AIP1, ST3GAL4, ST14, JAM3, KIRREL3, BARX2, GLB1L2, ARHGAP32) 0.129202608098038 68 0.0413128362495431 0.800974232764117 4229 0.408499828410414 2 2 0 -7.1424535182424 LTS-012 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.55 1 NA NA NA NA NA LTS-012 chr12 90923 247900 156978 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.375 1 NA 1.51057846985301 43 0.646082986005824 4 4 0 -5.76486425789414 LTS-012 chr12 247901 3951340 3703440 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, PRMT8, PARP11, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, CACNA2D4) 0.324993222163243 97 0.0720887405357278 1.27924701479519 3906 0.598606929717576 3 2 1 -6.88489333540136 LTS-012 chr12 3951341 3955414 4074 * PARP11 0.347298344598615 2 0.0912167747730646 0.593036788258656 59 0.195505707307264 3 2 1 -6.78087959690834 LTS-012 chr12 3955415 3982370 26956 * PARP11 NA 0 NA 2.36 1 NA NA NA NA NA LTS-012 chr12 3982371 7355396 3373026 * c(LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, FGF6, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, RPL13P5, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NDUFA9, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, NA NA NA NA NA NA NA NA NA LTS-012 C1R, C1S, TPI1, VWF, FGF23, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, DYRK4, CCND2, CD4, CD9, CD27, CLSTN3, NCAPD2) 0.322332224095967 124 0.0553996921032041 1.27801817645505 5328 0.686277717783718 3 2 1 -7.01507034057864 LTS-012 NA NA NA NA LTS-012 chr12 7355397 7355926 530 * PEX5 NA 0 NA 0.692 1 NA NA NA NA NA LTS-012 chr12 7355927 9090487 1734561 * c(SLC2A14, A2ML1, CLEC4C, PHC1, NECAP1, CLEC4E, CD163L1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, POU5F1P3, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.305217725029473 33 0.0600661724746764 1.06581753421801 1980 0.586703125547119 4 3 1 -7.24166874040191 LTS-012 chr12 9090488 9093789 3302 * c(PHC1, M6PR) 0.345 1 NA 0.496877128602509 53 0.316478616661638 1 1 0 -5.76466450447609 LTS-012 chr12 9093790 9590652 496863 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.333257191970739 19 0.0646531908548936 1.0595090585829 707 0.622766536719247 3 2 1 -6.85965436527274 LTS-012 chr12 9590653 9717935 127283 * DDX12P NA 0 NA 0.142666432670302 95 0.0499794358607474 0 NA NA -8.7787432576869 LTS-012 chr12 9717936 9747240 29305 * character(0) NA 0 NA 1.085 1 NA NA NA NA NA LTS-012 chr12 9747241 11287290 1540050 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.287604553702405 75 0.0805354334193095 0.909730831134713 2039 0.475628232979996 3 2 1 -7.5592096431572 LTS-012 chr12 11287291 11338533 51243 * c(SMIM10L1, PRH1-PRR4, PRB4) NA 0 NA 1.447 1 NA NA NA NA NA LTS-012 chr12 11338534 26811069 15472536 * c(MIR920, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, C12orf77, EMP1, EPS8, ETV6, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, GOLT1B, NA NA NA NA NA NA NA NA NA LTS-012 DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, PRB1, PRB3, PRB4, ETNK1, GPRC5D, ATF7IP, H2AFJ, LMO3, CMAS, FAM234B, PTPRO, BCAT1, RECQL, ST8SIA1, PRB2, SLCO1A2, SOX5, MIR613, MIR614, SKP1P2, SLC15A5, BHLHE41, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, C2CD5) 0.311467104639032 159 0.0857233893550954 1.07559867939572 7761 0.54334903836216 3 2 1 -7.49605647321386 LTS-012 NA NA NA NA LTS-012 chr12 26811070 26812044 975 * ITPR2 NA 0 NA 0.741 1 NA NA NA NA NA LTS-012 chr12 26812045 26812245 201 * ITPR2 0.26 1 NA 0.78623478819581 5 0.331690066176242 2 2 0 -5.76442929601474 LTS-012 chr12 26812246 27181799 369554 * c(FGFR1OP2, ITPR2, TM7SF3, ASUN, MED21) 0.492 1 NA 0.873838171985633 397 0.379533246139011 2 2 0 -5.76552403692008 LTS-012 chr12 27181800 33592681 6410882 * c(MANSC4, LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, SMCO2, OVCH1, SYT10, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, PKP2, KIAA1551, CCDC91, FAR2, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, FLJ13224, TMTC1, PPFIBP1, MED21) 0.431059157475103 81 0.0469023545698671 0.821051410806893 4004 0.866570936327398 2 1 1 -6.77373355957491 LTS-012 chr12 33592682 34182670 589989 * c(SYT10, ALG10) NA 0 NA 0.717935979221087 73 0.486924384832903 2 NA NA -5.83802530828313 LTS-012 chr12 38710341 38710459 119 * character(0) 0.486 1 NA 0.549123162266654 3 0.228291480349136 1 1 0 -5.76441038002362 LTS-012 chr12 38710460 44783244 6072785 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, IRAK4, PPHLN1, KIF21A, TWF1, ADAMTS20, PUS7L, TMEM117, ZCRB1) 0.428747682765778 63 0.05628588063114 0.735560371928907 3308 0.365750007475458 2 1 1 -7.65619192095423 LTS-012 chr12 44783245 47470997 2687753 * c(ANO6, ARID2, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, SLC38A2, SLC38A4, RNY5, SLC38A1, RACGAP1P, TMEM117, SCAF11) 0.402877284203853 21 0.0495818707267274 1.12202577058127 1373 0.649535262099885 2 1 1 -7.0941072332225 LTS-012 chr12 47470998 47471439 442 * AMIGO2 0.353 1 NA 0.645935218928352 11 0.176774586820206 1 1 0 -5.76459795433225 LTS-012 chr12 47471440 48104695 633256 * c(PCED1B-AS1, MIR4698, AMIGO2, RPAP3, ENDOU, PCED1B) 0.388 1 NA 1.09594624401414 192 0.485225692318348 3 3 0 -5.78853281251866 LTS-012 chr12 48104696 48105407 712 * ENDOU NA 0 NA 1.642 1 NA NA NA NA NA LTS-012 chr12 48105408 48389188 283781 * c(RAPGEF3, COL2A1, HDAC7, SLC48A1, VDR, TMEM106C, ENDOU) 0.371667189908013 17 0.103391816151274 1.43762855884411 976 0.598283068029116 3 2 1 -6.7500257133727 LTS-012 chr12 48389189 48389494 306 * COL2A1 NA 0 NA 0.688 1 NA NA NA NA NA LTS-012 chr12 48389495 50748520 2359026 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, TUBA1B, MCRS1, ADCY6, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, RND1, GPD1, LOC283332, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, ASIC1, DHH, FKBP11, LIMA1, PFKM, KANSL2, PRKAG1, LMBR1L, PRPH, NCKAP5L, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, NA NA NA NA NA NA NA NA NA LTS-012 TMBIM6, WNT1, WNT10B, CACNB3, TUBA1A, DNAJC22, KMT2D, FAM186B, TUBA1C, COX14, CCDC65, CCNT1, FMNL3, CERS5, DDX23) 0.376798539335364 79 0.069235147721183 1.25084694530892 5674 1.07111883277224 3 2 1 -6.76452812305839 LTS-012 NA NA NA NA LTS-012 chr12 50748521 52100315 1351795 * c(GALNT6, LARP4, FAM186A, CELA1, METTL7A, LETMD1, TMPRSS12, ATF1, SLC11A2, BIN2, POU6F1, SMAGP, DIP2B, HIGD1C, SCN8A, TFCP2, CSRNP2, SLC4A8, DAZAP2) 0.432547130832185 42 0.0495466321485023 0.841007057643803 1890 0.407456169125556 2 1 1 -6.75509492145245 LTS-012 chr12 52100316 55041081 2940766 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, DCD, SP7, GTSF1, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NCKAP1L, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, ANKRD33, IGFBP6, ITGA5, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, NA NA NA NA NA NA NA NA NA LTS-012 KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LOC400043, FIGNL2, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, KRT76, CSAD, PDE1B, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, CALCOCO1, RARG, C12orf10, ATG101, SCN8A, GLYCAM1, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, LACRT, ACVR1B, KRT75, ACVRL1, ESPL1) 0.423870114560203 118 0.0943079921981063 0.961297816867247 6611 0.497089856959943 2 1 1 -6.76902080339039 LTS-012 NA NA NA NA LTS-012 chr12 55041082 55042015 934 * DCD NA 0 NA 0.752 1 NA NA NA NA NA LTS-012 chr12 55042016 56030888 988873 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.347591956906631 2 0.330218866814118 0.698452385415649 630 0.328294478867328 2 1 1 -7.09835644540038 LTS-012 chr12 56030889 58191319 2160431 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, OR10P1, SDR9C7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MARS, METTL1, MIP, MMP19, MYL6, NA NA NA NA NA NA NA NA NA LTS-012 MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.443685903482762 70 0.0885471368545283 1.00212390073173 7893 0.438496859038243 2 1 1 -6.82755450854601 LTS-012 NA NA NA NA LTS-012 chr12 58191320 63544209 5352890 * c(LOC100506844, TSFM, CTDSP2, AVIL, LRIG3, MON2, LINC01465, FAM19A2, MIRLET7I, MIR26A2, AVPR1A, PPM1H, ATP23, SLC16A7, USP15) 0.390843148581468 42 0.0632330460951147 0.85353974462676 1435 0.407275023131344 2 1 1 -7.00547183841323 LTS-012 chr12 63544210 64480825 936616 * c(TMEM5, DPY19L2, AVPR1A, SRGAP1) NA 0 NA 0.810153469302216 258 0.433298247630048 2 NA NA -5.79573917942997 LTS-012 chr12 64480826 64519806 38981 * SRGAP1 0.17 1 NA 0.520950026338055 39 0.211206169142714 1 1 0 -5.76670060665946 LTS-012 chr12 64519807 66583189 2063383 * c(MIR548Z, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, TBK1, FLJ41278, TMBIM4, SRGAP1, MIR548C, HMGA2, LLPH) 0.167560203257459 30 0.059577641798739 0.621459125610415 1903 0.374621607641971 1 1 0 -6.95111960164573 LTS-012 chr12 66583190 66590669 7480 * IRAK3 NA 0 NA 0.364 1 NA NA NA NA NA LTS-012 chr12 66590670 93805417 27214748 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, POC1B-GALNT4, MIR4699, MIR548AL, CCT2, FRS2, GLIPR1, CPSF6, KERA, KRR1, NUDT4, IRAK3, OSBPL8, RAB3IP, TPH2, CPM, GLIPR1L2, TSPAN19, BEST3, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, ZFC3H1, CCER1, PHLDA1, RAB21, ZDHHC17, GRIP1, LINC01619, GLIPR1L1, MGAT4C, KCNMB4, POC1B, OTOGL, TRHDE-AS1, CCDC59, TRHDE, NA NA NA NA NA NA NA NA NA LTS-012 LINC00936, C12orf74, IFNG, PTPRQ, KCNC2, LRRC10, MKRN9P, LUM, LYZ, MDM2, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, ATP2B1, NTS, IL22, PAWR, SLC6A15, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, CLLU1OS, CLLU1, PTPRB, PTPRR, RAP1B, LOC643339, TBC1D15, SYT1, MIR617, MIR618, BTG1, TSPAN8, LOC728084, MRS2P2, UBE2N, ACSS3, BBS10, CEP290, YEATS4, ALX1, THAP2, EEA1, LRRIQ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 METTL25, DYRK2, CAPS2, PPFIA2, LGR5, GALNT4, LIN7A, NAV3, C12orf29, RASSF9, HELB) 0.196266960248961 173 0.0720007869518314 0.524151387487986 11472 0.278220169360027 1 1 0 -7.41043015992901 LTS-012 NA NA NA NA LTS-012 chr12 93805418 93823109 17692 * UBE2N NA 0 NA 1.432 1 NA NA NA NA NA LTS-012 chr12 93823110 108961998 15138889 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, MIR5700, PLXNC1, CKAP4, METAP2, PRDM4, PWP1, FICD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, FAM71C, RMST, ELK3, UHRF1BP1L, KIAA1033, ISCU, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, MRPL42, NA NA NA NA NA NA NA NA NA LTS-012 HCFC2, HAL, APAF1, IGF1, C12orf42, C12orf75, ARL1, LTA4H, MIR135A2, ASCL1, MIR331, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, TMCC3, NTN4, RFX4, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, NUP37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, CRADD, SOCS2, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.190109806535162 226 0.0706639744575388 0.560618950627997 10886 0.303451474645214 1 1 0 -6.73972924252309 LTS-012 NA NA NA NA LTS-012 chr12 108961999 109525735 563737 * c(USP30-AS1, DAO, ISCU, CORO1C, TMEM119, SSH1, SVOP, SELPLG, USP30) 0.196326897692793 8 0.0524213696883246 0.65291069469722 814 0.241532879789286 1 1 0 -6.87893681895015 LTS-012 chr12 109525736 109548540 22805 * c(ALKBH2, UNG, USP30) NA 0 NA 0.672504839817332 104 0.410275740625473 1 NA NA -5.76731989921767 LTS-012 chr12 109548541 109577735 29195 * c(ACACB, UNG) 0.132 1 NA 1.17847726305012 23 0.682184740200809 3 3 0 -5.7645038673221 LTS-012 chr12 109577736 110353399 775664 * c(MIR4497, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, TRPV4, KCTD10, TCHP, FAM222A, FAM222A-AS1, UBE3B) 0.102269112361896 10 0.0515682934455746 1.15399956777501 1569 2.04498229198846 3 3 0 -6.78556006050021 LTS-012 chr12 110353400 110354347 948 * TCHP NA 0 NA 0.75 1 NA NA NA NA NA LTS-012 chr12 110354348 113495923 3141576 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, DTX1, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, OAS1, OAS2, OAS3, GPN3, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.109107222176711 48 0.0428981144917857 0.974307840097308 4657 0.493330609925922 2 2 0 -6.82349335817519 LTS-012 chr12 113495924 113496031 108 * DTX1 NA 0 NA 2.511 1 NA NA NA NA NA LTS-012 chr12 113496032 124809419 11313388 * c(LINC00173, MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR4498, MIR4472-2, MIR4700, MPHOSPH9, CAMKK2, TMED2, GCN1, SDS, RAB35, SNRNP35, CIT, SDSL, IQCD, SPPL3, COX6A1, RFLNA, ZNF664, TMEM120B, WDR66, LINC00934, CCDC60, DTX1, RILPL2, DNAH10, PLBD2, EIF2B1, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, ABCB9, ATP6V0A2, LRRC43, TBX5-AS1, FBXW8, HSPB8, HCAR1, MORN3, KSR2, NA NA NA NA NA NA NA NA NA LTS-012 GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, CFAP73, TMEM233, KMT5A, MSI1, NOS1, P2RX4, P2RX7, PEBP1, ARL6IP4, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, TPCN1, RHOF, VSIG10, TESC, SBNO1, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PITPNM2, DDX55, PXN, RFC5, BCL7A, RPLP0, CLIP1, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, TBX5, TBX3, HNF1A, MIR620, DDX54, B3GNT4, OGFOD2, VPS37B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 C12orf49, TCTN2, SLC8B1, RNF34, CCDC92, CDK2AP1, COQ5, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, ORAI1, RNFT2, RITA1, DENR, OASL, DYNLL1, SRSF9, HRK, HCAR3, HIP1R, C12orf65, BICDL1, CABP1, NCOR2, KNTC1, MLEC, RBM19, RNF10) 0.0960063959771444 274 0.0382996890333154 1.23202286237027 12542 0.944475534801751 3 3 0 -6.76606443194662 LTS-012 NA NA NA NA LTS-012 chr12 124809420 125396279 586860 * c(UBC, SCARB1, NCOR2) 0.0887999669765677 22 0.022481594203305 1.58323778789462 460 0.77802363720289 3 3 0 -6.77157533131966 LTS-012 chr12 125396280 125399133 2854 * UBC 0.0808754769252655 7 0.0261715949256514 0.633224903888126 33 0.36643733444582 3 3 0 -6.7717212322502 LTS-012 chr12 125399134 125456004 56871 * c(MIR5188, DHX37, UBC) 0.255 1 NA 0.864180423067343 137 0.330134377281611 2 2 0 -5.76486257990046 LTS-012 chr12 125456005 131687250 6231246 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, GLT1D1, STX2, RIMBP2, ADGRD1, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, DHX37, RAN, AACS, TMEM132C, PIWIL1) 0.203138158567336 55 0.0756981512390501 0.649956882179303 1947 0.333607383511936 1 1 0 -7.4584396826383 LTS-012 chr12 131687251 131687263 13 * LINC01257 0.303 1 NA 0.975 1 NA NA NA NA NA LTS-012 chr12 131687264 133498224 1810961 * c(LOC100130238, ZNF605, LRCOL1, LINC01257, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.18050148429489 78 0.0600125361529114 0.777747000380201 2512 0.437568649284707 1 1 0 -7.33795937432953 LTS-012 chr12 133498225 133812039 313815 * c(ZNF605, ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.171049103048986 18 0.0912135503349469 0.513144644862464 890 0.396028776473182 1 1 0 -6.77744139675741 LTS-012 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.823487760018966 13 0.190390018053361 2 NA NA -5.76449238658033 LTS-012 chr13 19271620 19271676 57 * character(0) 0.18 1 NA 0.505 1 NA NA NA NA NA LTS-012 chr13 19271677 21722643 2450967 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00417, SAP18, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, TUBA3C, ZMYM2, IFT88, ZMYM5, TPTE2) 0.196260181590041 33 0.0647728548643081 0.556530762262997 1445 0.30174440919062 1 1 0 -6.73402889714552 LTS-012 chr13 21722644 21727828 5185 * c(SAP18, SKA3) 0.492 1 NA 0.838569073960413 17 0.404796744566659 2 2 0 -5.76449816757875 LTS-012 chr13 21727829 21750538 22710 * c(SKA3, MRPL57) 0.419660011586272 14 0.035727294334158 0.91638687174356 90 0.632525101868995 7 4 3 -6.77057214234386 LTS-012 chr13 21750539 22277439 526901 * c(SKA3, MICU2, FGF9, ZDHHC20, MIPEPP3, MRPL57) 0.298 1 NA 0.620630750798123 261 0.448306741640864 1 1 0 -5.78303211264472 LTS-012 chr13 22277440 93519250 71241811 * c(LINC00462, LINC00426, TPT1-AS1, PAN3-AS1, MIR1297, MIR548F5, MIR759, MIR2276, MIR320D1, MIR4305, MIR3169, MINOS1P1, MIR3665, MIR3613, RBM26-AS1, SACS-AS1, LINC00327, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, MIR4500, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, GPC5-AS1, LINC00297, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, MTUS2-AS1, LINC00331, LINC00332, NA NA NA NA NA NA NA NA NA LTS-012 LINC00333, LINC00351, LINC00353, LINC00366, LINC00379, LINC00381, LINC00398, LINC00423, LINC00433, LINC00446, LINC00457, LINC00424, LINC00559, LINC00571, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, SPATA13-AS1, STARD13-AS, RNASEH2B-AS1, SMIM2-IT1, LINC00348, MRPS31P5, FRY, LPAR6, SLC25A15, LHFP, TRIM13, USPL1, CDK8, MRPS31, SPRY2, DLEU1, N4BP2L2, CDX2, PIBF1, OLFM4, POSTN, HSPH1, WASF3, SUGT1, RCBTB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 LECT1, WBP4, AKAP11, KLF12, EXOSC8, SLITRK1, KCTD12, ARL11, WDFY2, N4BP2L2-IT2, CLN5, LINC00284, CSNK1A1L, RXFP2, TEX26, SLAIN1, CPB2, PARP4, LINC00410, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, B3GLCT, DACH1, DGKH, CCDC122, STOML3, COMMD6, EDNRB, EEF1DP3, ELF1, ESD, AMER2, USP12, MTIF3, GSX1, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, SPATA13, LNX2, FGF9, GPC5, FNDC3A, DIS3, PDS5B, MYCBP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 VWA8, FOXO1, ZC3H13, SPG20, LRCH1, FLT1, FLT3, MTUS2, ALOX5AP, SLC25A30, PAN3, SLITRK5, FBXL3, SACS, INTS6, CKAP2, NUFIP1, SNORD102, NBEA, PCDH17, OR7E156P, GPR12, SUGT1P3, SIAH3, KCNRG, LINC00282, SLC46A3, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GTF3A, GUCY1B2, ALG5, HMGB1, HTR2A, LINC00550, LINC00347, C1QTNF9, FREM2, NEK5, PDX1, TPTE2P6, KPNA3, KCTD4, RASL11A, C1QTNF9B, SHISA2, NHLRC3, SERP2, LCP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ANKRD20A19P, SERTM1, LINC00547, LINC00548, LMO7, MIR16-1, MIR19B1, MIR17HG, SMAD9, MIPEP, ATP5EP2, LINC00544, ALG11, MZT1, NEK3, ATP12A, PABPC3, PCDH8, PCDH9, VPS36, POLR1D, PHF11, POMP, UFM1, ATP8A2, ATP7B, UBL3, C1QTNF9B-AS1, POU4F1, NDFIP2, SOHLH2, ENOX1, RCBTB1, NUDT15, GPALPP1, TNFRSF19, SUPT20H, CENPJ, THSD1, RNF17, CYSLTR2, SPRYD7, COG6, KLHL1, RB1, RFC3, RFXAP, RNF6, RPL21, SNORA27, ATXN8OS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 RBM26, TSC22D1-AS1, MIR4500HG, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, LINC00598, LINC00371, SERPINE3, CTAGE11P, PCDH20, SLC7A1, BRCA2, SNORA31, KLF5, BTF3P11, MIR621, MIR622, TPT1, TRPC4, CCDC169, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, RNF219, NAA16, RNASEH2B, DHRS12, BORA, RUBCNL, PROSER1, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KATNAL1, KBTBD7, SLITRK6, EBPL, MEDAG, TNFSF11, SCEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, MTMR6, DCLK1, KL, EPSTI1, ITM2B, MTRF1, UTP14C, NUP58, TBC1D4) 0.186811146269805 387 0.0754929295023135 0.557857798390361 21703 0.374585304787008 1 1 0 -6.73957196732866 LTS-012 NA NA NA NA LTS-012 chr13 93519251 102366990 8847740 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, GPC6, GPC6-AS2, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, ABCC4, SOX21, RNF113B, GPR180, DCT, CLYBL, GPR183, GPC5, DZIP1, DOCK9, TGDS, NALCN, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, PCCA, UGGT2, DNAJC3, RAP2A, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, CLDN10, ITGBL1, TM9SF2) 0.134845835526681 57 0.0499767865913264 0.743850317498582 3545 0.388239175898882 2 2 0 -7.82589182907605 LTS-012 chr13 102366991 102367875 885 * ITGBL1 NA 0 NA 0.285 1 NA NA NA NA NA LTS-012 chr13 102367876 113338758 10970883 * c(BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, METTL21C, ERCC5, FGF14, MYO16, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, ING1, LIG4, ATP11AUN, BIVM, ARGLU1, ANKRD10, RAB20, NAXD, CCDC168, SLC10A2, SOX1, TPP2, LINC00460, FAM155A, KDELC1, CARS2, ABHD13, IRS2, ARHGEF7, TEX30, ITGBL1) 0.169314056063565 100 0.0677304998214291 0.61715703986232 3861 0.297195341895973 1 1 0 -7.515467686236 LTS-012 chr13 113338759 114792842 1454084 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, ADPRHL1, F7, F10, RASA3, ATP11A, MCF2L, GAS6, TMEM255B, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, TFDP1, GRTP1, CUL4A, PROZ) 0.169427019187409 58 0.0450771503733701 0.743332627880371 1876 0.32702894969062 1 1 0 -7.51647906180557 LTS-012 chr13 114792843 114839231 46389 * RASA3 NA 0 NA 0.804657526739265 26 0.3492614119054 2 NA NA -5.76713876679163 LTS-012 chr13 114839232 115092817 253586 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 0.490906599219217 235 0.235855056417606 1 NA NA -5.80718909773804 LTS-012 chr14 19434116 20228354 794239 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0.48 1 NA 1.08195383565527 51 0.276458719394798 3 3 0 -5.8765261573007 LTS-012 chr14 20228355 22591991 2363637 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, NA NA NA NA NA NA NA NA NA LTS-012 TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.449303176384025 136 0.0490251941588136 0.903906469332007 4028 0.437438663024716 2 1 1 -6.82332180020876 LTS-012 NA NA NA NA LTS-012 chr14 22591992 22961968 369977 * character(0) 0.386151280077947 21 0.113552903550556 1.3426556353351 384 0.551271201233673 3 2 1 -6.76723349442419 LTS-012 chr14 22961969 22962377 409 * character(0) NA 0 NA 0.549 1 NA NA NA NA NA LTS-012 chr14 22962378 24877567 1915190 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, MRPL52, PSMB11, LTB4R, MDP1, DAD1, FITM1, REM2, NOP9, ADCY4, ACIN1, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, LTB4R2, PSMB5, PSME1, PSME2, NA NA NA NA NA NA NA NA NA LTS-012 NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.443423834452508 86 0.0660155694026551 1.00122485989327 6324 0.586394492734388 2 1 1 -6.79665777669245 LTS-012 NA NA NA NA LTS-012 chr14 24877568 35264973 10387406 * c(MIR4307, LINC00645, LOC100506071, MIR548AI, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, CMA1, CTSG, COCH, SPTSSA, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, GPR33, STXBP6, STRN3, GZMH, GZMB, LINC01551, ARHGAP5, NOVA1, G2E3, EAPP, PRKD1, SDR39U1, NYNRIN, SNX6, NPAS3, CBLN3, MIR624, NUBPL, ARHGAP5-AS1, AKAP6) 0.447046362107904 77 0.0529826575012885 0.880015693742058 3748 0.452041011531735 2 1 1 -6.80523335976866 LTS-012 chr14 35264974 35269552 4579 * BAZ1A NA 0 NA 2.042 1 NA NA NA NA NA LTS-012 chr14 35269553 36245052 975500 * c(BAZ1A, RALGAPA1, IGBP1P1, FAM177A1, NFKBIA, PPP2R3C, PSMA6, SRP54, INSM2, KIAA0391) 0.324272838357952 12 0.153714685523064 1.17331556078423 801 0.660200010617976 3 2 1 -6.77090206965118 LTS-012 chr14 36245053 36277816 32764 * RALGAPA1 NA 0 NA 0.792 1 NA NA NA NA NA LTS-012 chr14 36277817 44975606 8697790 * c(SLC25A21-AS1, LOC100288846, MIR4503, PTCSC3, LINC00609, SEC23A, NA, TRAPPC6B, MIPOL1, LRFN5, CLEC14A, RALGAPA1, SFTA3, FBXO33, NKX2-8, LINC00639, FOXA1, MIA2, PAX9, MBIP, PNN, SSTR1, NKX2-1, FSCB, BRMS1L, GEMIN2, SLC25A21) 0.429768153234439 43 0.0883963502000064 0.892718095053558 2103 0.4890810621745 2 1 1 -6.73370916853651 LTS-012 chr14 44975607 45701868 726262 * c(SNORD127, C14orf28, FKBP3, FAM179B, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB) 0 1 NA 0.898512856515099 739 0.717748089617739 2 2 0 -5.76441088663855 LTS-012 chr14 45701869 50280677 4578809 * c(MIR548Y, LINC00871, LINC00648, LRR1, KLHDC1, RPL10L, MDGA2, KLHDC2, MGAT2, POLE2, DNAAF2, MIS18BP1, RPL36AL, RPS29, NEMF) 0.300717101183683 9 0.21004470423645 0.879270786345698 813 0.502728894490539 2 1 1 -6.95737872520375 LTS-012 chr14 50280678 50459609 178932 * c(LINC01588, ARF6, NEMF) 0.354 1 NA 0.953740250983467 135 0.377934409242306 2 2 0 -5.76716850394494 LTS-012 chr14 50459610 59929713 9470104 * c(KTN1-AS1, OTX2-AS1, MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, FRMD6, SOCS4, NAA30, C14orf37, FRMD6-AS1, ABHD12B, LINC01599, NID2, ATG14, DAAM1, SAMD4A, GCH1, TIMM9, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, SLC35F4, PSMA3-AS1, TBPL2, TOMM20L, KTN1, LGALS3, OTX2, ATL1, NIN, DACT1, C14orf166, GNG2, TMEM260, FBXO34, C14orf105, AP5M1, ACTR10, PSMA3, NA NA NA NA NA NA NA NA NA LTS-012 PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, PYGL, ARID4A, SAV1, RPL13AP3, LINC00520, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, MAPK1IP1L, KIAA0586, DLGAP5) 0.440097675076882 122 0.0435297941093984 0.88875612255945 7035 0.556279955526988 2 1 1 -6.76584536006026 LTS-012 NA NA NA NA LTS-012 chr14 59929714 65068226 5138513 * c(HIF1A-AS2, WDR89, L3HYPDH, GPHB5, PPP1R36, SLC38A6, TMEM30B, ESR2, ZBTB1, SYNE2, KCNH5, HIF1A, C14orf39, HSPA2, LRRC9, FLJ22447, MNAT1, TEX21P, MTHFD1, SIX6, JKAMP, DHRS7, SIX4, PPM1A, PPP2R5E, PRKCH, RHOJ, TRMT5, RTN1, PCNX4, GPR135, LINC00643, SIX1, SNAPC1, CCDC175, ZBTB25, SGPP1, SYT16, AKAP5) 0.430525483148376 74 0.0478991926296507 0.784711309378719 4293 0.380099419649798 2 1 1 -7.09612228479859 LTS-012 chr14 65068227 65068307 81 * character(0) NA 0 NA 1.641 1 NA NA NA NA NA LTS-012 chr14 65068308 65270497 202190 * c(PLEKHG3, SPTB) 0.384249932816177 10 0.140719421387226 1.04485684929805 459 0.502704795373858 3 2 1 -6.76335377627265 LTS-012 chr14 65270498 65271681 1184 * SPTB NA 0 NA 0.854 1 NA NA NA NA NA LTS-012 chr14 65271682 67855126 2583445 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, FAM71D, EIF2S1, FNTB, FUT8, PLEK2, GPX2, RAB15, MAX, LINC00238, ATP6V1D, MPP5, FUT8-AS1, SPTB, CHURC1) 0.418975227803764 44 0.0535367530986585 0.776516692716243 1219 0.424323076971435 2 1 1 -6.93490254911343 LTS-012 chr14 67855127 67857375 2249 * PLEK2 NA 0 NA 1.523 1 NA NA NA NA NA LTS-012 chr14 67857376 69798284 1940909 * c(VTI1B, RDH12, TMEM229B, ACTN1-AS1, ZFYVE26, PLEK2, ARG2, RDH11, PIGH, EXD2, GALNT16, PLEKHH1, RAD51B, ZFP36L1, ACTN1, DCAF5) 0.43961456789341 39 0.0502435498844703 0.90799399258058 1739 0.505669440047643 2 1 1 -6.75471030402719 LTS-012 chr14 69798285 69819362 21078 * GALNT16 0 1 NA 1.03756969735075 51 0.466413205678583 2 2 0 -5.76562939624598 LTS-012 chr14 69819363 70883667 1064305 * c(LOC100289511, SYNJ2BP-COX16, ADAM21P1, ERH, PLEKHD1, COX16, SYNJ2BP, SLC39A9, CCDC177, GALNT16, SMOC1, SRSF5, SLC8A3, SLC10A1, SUSD6) 0.274321946188651 9 0.221915962572422 0.885585941570092 879 0.529762877596627 2 2 0 -7.0101789237181 LTS-012 chr14 70883668 70924419 40752 * c(SYNJ2BP-COX16, SYNJ2BP, ADAM21) 0 1 NA 0.618294769983002 11 2.18139599172807 1 1 0 -5.76446700324369 LTS-012 chr14 70924420 70926242 1823 * ADAM21 NA 0 NA 0.406029087198107 49 0.427195167206224 1 NA NA -5.76500573533763 LTS-012 chr14 70926243 71109153 182911 * c(MED6, TTC9, ADAM20P1, ADAM21, ADAM20) 0.47 1 NA 0.853619190300944 155 0.447696429986555 2 2 0 -5.7657958716124 LTS-012 chr14 71109154 91666298 20557145 * c(SNORA11B, MIR1260A, MIR4505, MIR4709, DIO2-AS1, LINC00911, BATF, NPC2, AHSA1, ACOT2, TMED10, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, LOC145474, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, PCNX1, TTLL5, ANGEL1, TTC9, FOS, FLRT2, GALC, SIPA1L1, DCAF4, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, NA NA NA NA NA NA NA NA NA LTS-012 GSTZ1, GTF2A1, POMT2, SNORD56B, VSX2, HEATR4, FOXN3-AS1, LINC00642, LTBP2, MAP3K9, ALDH6A1, COQ6, FCF1, PGF, ZFYVE1, KCNK10, NRDE2, VRTN, FLVCR2, GPATCH2L, TDP1, SPATA7, YLPM1, PSEN1, KCNK13, PSMC1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, RBM25, VIPAS39, SEL1L, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, ZC3H14, C14orf159, CALM1, BBOF1, DPF3, SLIRP, DNAL1, RPS6KL1, GPR65, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 STON2, CIPC, NUMB, ALKBH1, EIF2B2, PAPLN, EFCAB11, ELMSAN1, LIN52, NEK9, PNMA1, RPS6KA5, NRXN3, SPTLC2, ENTPD5, RGS6, ACYP1, AREL1) 0.430974305782049 317 0.0721430365144541 0.854465622767383 12871 0.497033121775943 2 1 1 -6.85216530039543 LTS-012 NA NA NA NA LTS-012 chr14 91666299 91670996 4698 * C14orf159 NA 0 NA 1.041 1 NA NA NA NA NA LTS-012 chr14 91670997 91845176 174180 * c(CCDC88C, C14orf159, GPR68) 0.481391990454631 5 0.0112827301660547 1.20083803409201 353 0.479267594815385 4 2 2 -11.6668662103455 LTS-012 chr14 91845177 92588219 743043 * c(FBLN5, TC2N, ATXN3, CCDC88C, NDUFB1, PPP4R3A, CATSPERB, TRIP11) 0.422680219163839 18 0.0803785162985293 0.860118490244897 984 0.551069921208002 2 1 1 -6.74092693562633 LTS-012 chr14 92588220 92628878 40659 * CPSF2 0.5 1 NA 0.70896089000206 83 0.254844989272215 2 2 0 -5.78525749261901 LTS-012 chr14 92628879 95599865 2970987 * c(CHGA, SERPINA3, IFI27L1, SLC24A4, GSC, SERPINA12, PRIMA1, DICER1, LINC00521, SERPINA11, TMEM251, FAM181A-AS1, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, SERPINA5, SERPINA10, ASB2, SERPINA1, SERPINA4, CPSF2, UBR7, BTBD7, LGMN, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, RIN3, IFI27L2, GON7, SERPINA6, FAM181A, GOLGA5) 0.43633078424065 69 0.0708618121376905 0.87192034170213 3177 0.416318464166055 2 1 1 -6.74624455668556 LTS-012 chr14 95599866 95604193 4328 * DICER1 NA 0 NA 2.221 1 NA NA NA NA NA LTS-012 chr14 95604194 96558685 954492 * c(MIR3173, TUNAR, SYNE3, DICER1, TCL6, SNHG10, DICER1-AS1, GLRX5, C14orf132, LINC00341, CLMN, TCL1A, TCL1B) 0.444024649275183 18 0.0390595322402039 1.10765510720866 640 0.487255781086856 2 1 1 -6.91221840213751 LTS-012 chr14 96558686 96853558 294873 * c(GSKIP, ATG2B, C14orf132, BDKRB1, BDKRB2) 0.401410387664473 23 0.0536717442094275 0.763933801177824 668 0.313208217406146 2 1 1 -6.94721702570743 LTS-012 chr14 96853559 96853562 4 * GSKIP NA 0 NA 1.384 1 NA NA NA NA NA LTS-012 chr14 96853563 101391335 4537773 * c(MIR665, LOC100129345, MIR2392, MIR5698, CYP46A1, PAPOLA, AK7, SLC25A29, DEGS2, EML1, C14orf177, SLC25A47, LINC00523, CCDC85C, LINC01550, RTL1, MIR127, MIR136, MIR337, MIR345, EVL, GSKIP, MEG3, MIR433, MIR431, MIR493, MIR432, BEGAIN, BCL11B, VRK1, WARS, YY1, SNORD113-1, MIR770, MEG8, WDR25, SETD3, HHIPL1, DLK1, CCNK) 0.433788203506742 51 0.0762569546812283 0.905837875607541 2576 0.54623757317206 2 1 1 -6.73512248159646 LTS-012 chr14 101391336 101393672 2337 * character(0) NA 0 NA 0.551 1 NA NA NA NA NA LTS-012 chr14 101393673 101459679 66007 * c(SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, NA NA NA NA NA NA NA NA NA LTS-012 SNORD114-30, SNORD114-31) NA 0 NA 0.559220370308084 192 0.238420054431103 1 NA NA -5.76442606174536 LTS-012 NA NA NA NA LTS-012 chr14 101459680 101488370 28691 * character(0) NA 0 NA 1.339 1 NA NA NA NA NA LTS-012 chr14 101488371 105617891 4129521 * c(MIR300, MIR541, MIR543, MIR889, ZBTB42, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, ANKRD9, C14orf79, PLD4, ADSSL1, LINC00239, LINC00637, DIO3, DYNC1H1, LINC00638, EIF5, AKT1, RCOR1, PPP1R13B, KIF26A, CEP170B, GPR132, HSP90AA1, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR134, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR376C, NA NA NA NA NA NA NA NA NA LTS-012 MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, CINP, CDCA4, PPP2R5C, ZNF839, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR494, MIR495, MIR496, MOK, MIR487A, INF2, RD3L, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, XRCC3, MIR758, MIR668, ZFYVE21, AMN, APOPT1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TECPR2) 0.448103714082963 167 0.0514919490892371 0.919501275073227 5955 0.457668484156112 2 1 1 -6.81169157462248 LTS-012 NA NA NA NA LTS-012 chr14 105617892 105639272 21381 * JAG2 0 1 NA 1.09165194903918 47 0.614134727449734 3 3 0 -5.76495378769495 LTS-012 chr14 105639273 106406008 766736 * c(CRIP1, CRIP2, ELK2AP, PACS2, NUDT14, C14orf80, BRF1, TEX22, TMEM121, BTBD6, MTA1, FAM30A) 0.348307509189251 15 0.174278376114056 0.98392056390324 1354 0.526577131024128 3 2 1 -6.82292868512739 LTS-012 chr14 106406009 106436032 30024 * ADAM6 NA 0 NA 0.542 1 NA NA NA NA NA LTS-012 chr14 106436033 106866451 430419 * c(LINC00226, ADAM6) 0.201507990313454 5 0.181616904499554 0.528575816265421 182 0.566152521056953 1 1 0 -6.73630472639289 LTS-012 chr14 106866452 106866464 13 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-012 chr14 106866465 107035210 168746 * LINC00221 0.337184212636199 28 0.0532724851302966 1.55252456482055 101 0.972359748546832 6 4 2 -6.77446430571965 LTS-012 chr14 107035211 107048776 13566 * character(0) NA 0 NA 0.875 1 NA NA NA NA NA LTS-012 chr14 107048777 107282973 234197 * character(0) 0.409028725654156 6 0.094921897719476 0.71080911442699 88 0.445503801642536 2 1 1 -6.80099296005225 LTS-012 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.46949298731814 5 0.0604797486767265 1 NA NA -5.76527864294733 LTS-012 chr15 20169987 20446043 276057 * character(0) 0.339 1 NA 0.855609010631793 25 0.614000475026961 2 2 0 -5.76542157924227 LTS-012 chr15 20446044 24920535 4474492 * c(HERC2P7, GOLGA8DP, MIR4508, POTEB, TUBGCP5, NIPA1, CYFIP1, LOC283683, OR4N4, HERC2P3, GOLGA6L1, GOLGA8IP, WHAMMP3, LINC01193, GOLGA8EP, OR4M2, OR4N3P, HERC2P2, NF1P2, GOLGA6L22, NDN, MAGEL2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA8S, GOLGA6L6, LOC727924, GOLGA8CP, MKRN3, PWRN1, PWRN2, NIPA2) 0.347002306414646 57 0.096221708402625 1.00566784755859 1216 0.765307567813904 3 2 1 -6.93844396574317 LTS-012 chr15 24920536 24922230 1695 * NPAP1 0.459 1 NA 1.02324034132195 37 0.340523276887355 2 2 0 -5.76456039649576 LTS-012 chr15 24922231 30337572 5415342 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-012 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, LOC100289656, MIR4715, PWAR1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, APBA2, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, HERC2P9, WHAMMP2, OCA2, LINC00929, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 NSMCE3, ATP10A, PDCD6IPP2, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, PWAR5, HERC2, SNURF) 0.442035605986449 50 0.0655774849366171 0.998228211483149 2403 0.507495525944889 2 1 1 -6.89155169112608 LTS-012 NA NA NA NA LTS-012 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.127 1 NA NA NA NA NA LTS-012 chr15 30491510 31042747 551238 * c(LOC100288637, DKFZP434L187, CHRFAM7A, ARHGAP11B) NA 0 NA 0.662462001808604 118 0.469005819719649 1 NA NA -5.80969486800502 LTS-012 chr15 31042748 31042778 31 * LOC100288637 0.357 1 NA 2.129 1 NA NA NA NA NA LTS-012 chr15 31042779 32393570 1350792 * c(LOC100288637, CHRNA7, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10) 0.45184006973431 20 0.0488308304250501 0.974349899712981 746 0.653049152071513 2 1 1 -6.86156997686436 LTS-012 chr15 32393571 32930270 536700 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) 0.281819270981936 2 0.0162634559672906 0.679379967147123 194 0.455961834024356 4 3 1 -7.6840818973812 LTS-012 chr15 32930271 34673808 1743538 * c(TMCO5B, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, EMC4, NOP10, EMC7, AVEN, RYR3, SCG5, KATNBL1, ARHGAP11A, SLC12A6) 0.420496810166945 83 0.0859840618325012 0.905322584629834 2006 0.574925831937389 2 1 1 -6.74085681208393 LTS-012 chr15 34673809 34678835 5027 * c(MIR1233-2, GOLGA8A) NA 0 NA 0.096 1 NA NA NA NA NA LTS-012 chr15 34678836 34819957 141122 * c(MIR1233-2, GOLGA8A, GOLGA8B) NA 0 NA 0.328052383707976 64 0.190784496116255 0 NA NA -6.14986404022775 LTS-012 chr15 34819958 40912949 6092992 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHST14, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, FSIP1, BAHD1, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, MEIS2, GOLGA8B, EIF2AK4, PLCB2, ZNF770, PAK6, KNL1, GJD2, C15orf56, PHGR1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, C15orf41, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR) 0.438494194701237 86 0.0830072698017787 0.923809428725308 3852 0.470463026371857 2 1 1 -6.75262545487606 LTS-012 chr15 40912950 40916488 3539 * KNL1 0.465 1 NA 0.469081085080405 75 0.133602756620425 1 1 0 -5.76788510672854 LTS-012 chr15 40916489 42451581 1535093 * c(JMJD7, PLA2G4B, MIR4310, RAD51-AS1, CHP1, OIP5, PLA2G4E, EXD1, RHOV, MAPKBP1, RTF1, MGA, VPS39, PLA2G4F, RPAP1, GCHFR, PLA2G4D, EHD4, ITPKA, LTK, NDUFAF1, NUSAP1, SPTBN5, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, MIR626, OIP5-AS1, TYRO3, CHAC1, ZFYVE19, JMJD7-PLA2G4B) 0.449258010143407 74 0.0608375943320986 1.07800377784279 3698 0.474368686808633 2 1 1 -6.9255962669416 LTS-012 chr15 42451582 42451650 69 * VPS39 NA 0 NA 0.561 1 NA NA NA NA NA LTS-012 chr15 42451651 42459034 7384 * VPS39 0.487582120672693 2 0.0162634559672906 0.934802369419895 84 0.271707753159149 2 1 1 -10.4841666784932 LTS-012 chr15 42459035 42483455 24421 * VPS39 0.365 1 NA 1.16237790623221 49 0.345976541122086 3 3 0 -5.76490613380576 LTS-012 chr15 42483456 43852785 1369330 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, VPS39, CCNDBP1, LRRC57, GANC, TMEM87A, TUBGCP4, MAP1A, HAUS2, STARD9, ZNF106, MIR627, TP53BP1, TMEM62, CAPN3, SNAP23, TGM5, PPIP5K1, LCMT2) 0.426021597596977 49 0.118576236993724 0.950687981447631 3138 0.424973909066284 2 1 1 -6.74871216140025 LTS-012 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.095 1 NA NA NA NA NA LTS-012 chr15 43873177 44029073 155897 * c(CKMT1B, CATSPER2, STRC, CATSPER2P1, CKMT1A, PPIP5K1) 0.40410328826716 17 0.0881302094830678 0.696477077632633 458 0.521586113765854 2 1 1 -6.80716200437538 LTS-012 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 0.978 1 NA NA NA NA NA LTS-012 chr15 44029088 45361255 1332168 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, TERB2, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.436683760538885 31 0.0666835247502581 0.906240227108946 1668 0.442378753546073 2 1 1 -6.73910195740244 LTS-012 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.135 1 NA NA NA NA NA LTS-012 chr15 45365581 45384903 19323 * c(DUOX2, SORD) NA 0 NA 0.355737563751783 40 0.419466339837192 1 NA NA -5.77757982614694 LTS-012 chr15 45384904 45983244 598341 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, DUOXA2, DUOX2, DUOX1, SQRDL, SLC30A4, SPATA5L1, C15orf48, SHF, DUOXA1, SLC28A2) 0.39492943768359 9 0.146429163761868 1.00534534448863 1201 0.632069892407815 2 1 1 -6.779111189863 LTS-012 chr15 45983245 62270934 16287690 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR2116, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, ADAM10, GNB5, ARPP19, SLC27A2, LEO1, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, FOXB1, SLC24A5, PRTG, LINC00926, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, AQP9, USP50, NA NA NA NA NA NA NA NA NA LTS-012 TEX9, TNFAIP8L3, LIPC, SHC4, CTXN2, UNC13C, MYO1E, MYO5A, NEDD4, MYEF2, RSL24D1, FAM63B, RNF111, ZNF280D, TRPM7, VPS13C, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, SQRDL, RAB27A, RORA, RFX7, SLC12A1, BNIP2, HSP90AB4P, MIR628, TCF12, ICE2, SLTM, ATP8B4, SEMA6D, POLR2M, SPPL2A, CGNL1, ALDH1A2, USP8, CCNB2, CCPG1, GCNT3, LDHAL6B, COPS2, PIGB, SECISBP2L) 0.429862202769364 241 0.0807407486917754 0.861205553014201 11377 0.448432546775996 2 1 1 -6.81545265262225 LTS-012 NA NA NA NA LTS-012 chr15 62270935 62273485 2551 * VPS13C NA 0 NA 1.142 1 NA NA NA NA NA LTS-012 chr15 62273486 63340587 1067102 * c(C2CD4A, MGC15885, C2CD4B, MIR190A, VPS13C, TPM1, TLN2) 0.447680469392231 12 0.0420593916294854 1.11952868760085 712 0.487808065351259 2 1 1 -6.96362106299537 LTS-012 chr15 63340588 63340607 20 * TPM1 0.444 1 NA 0.648 1 NA NA NA NA NA LTS-012 chr15 63340608 64459604 1118997 * c(USP3-AS1, LACTB, DAPK2, FBXL22, RPS27L, RAB8B, CSNK1G1, PPIB, SNX1, TPM1, CA12, SNX22, APH1B, FAM96A, HERC1, USP3) 0.436561139590055 43 0.0489290172235998 0.895797117610938 1758 0.406678412297185 2 1 1 -6.74323710924115 LTS-012 chr15 64459605 64460028 424 * CSNK1G1 0.348 1 NA 0.936207029041787 9 0.449660180333747 2 2 0 -5.76441235293475 LTS-012 chr15 64460029 64794363 334335 * c(ZNF609, CSNK1G1, TRIP4, KIAA0101) 0.367658838357674 7 0.16842943979743 0.945375391102806 365 0.582009588858644 3 2 1 -6.77694770688094 LTS-012 chr15 64794364 68349893 3555530 * c(MIR1272, MIR4311, IQCH-AS1, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, DIS3L, MTFMT, SLC51B, C15orf61, LCTL, ZNF609, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, SKOR1, SMAD3, SMAD6, OAZ2, RASL12, SPG21, HACD3, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SCARNA14, AAGAB, PIF1, PLEKHO2, VWA9, MEGF11, CILP, PIAS1, RAB11A, SLC24A1, IGDCC3) 0.388187815630205 76 0.069709376650365 1.25073513487704 4069 1.2377756355987 3 2 1 -6.82356821514651 LTS-012 chr15 68349894 68486097 136204 * c(PIAS1, CALML4) 0.321 1 NA 1.0535069348674 140 0.342396917443814 2 2 0 -5.78222045365558 LTS-012 chr15 68486098 69562479 1076382 * c(MIR548H4, MIR4312, FEM1B, CORO2B, ITGA11, SPESP1, GLCE, EWSAT1, CLN6, NOX5, ANP32A-IT1, ANP32A, CALML4) 0.32759115572123 13 0.121099450548204 1.3372456760778 919 0.635372606992983 3 2 1 -6.78748818156747 LTS-012 chr15 69562480 77402461 7839982 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR4313, MIR4513, SCAMP2, SNUPN, TSPAN3, ARID3B, CLK3, SENP8, HIGD2B, TMEM266, CSK, DRAIC, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, ETFA, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, LOXL1, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, SCAPER, PKM, PML, NA NA NA NA NA NA NA NA NA LTS-012 LRRC49, PAQR5, RPP25, COMMD4, UACA, IMP3, LARP6, GOLGA6B, C15orf39, THAP10, PARP6, FAM219B, ISLR2, PTPN9, BBS4, CPLX3, RCN2, PPCDC, CELF6, RPLP1, STRA6, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR629, MIR630, MIR631, TLE3, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, THSD4, HEXA-AS1, CCDC33, EDC3, CD276, ADPGK, SEMA7A, UBL7, PSTPIP1, UBE2Q2, COX5A, STOML1, KIF23) 0.318247752027704 106 0.0748263428299938 1.52815235970823 7736 1.8604073761422 4 3 1 -6.85707287087418 LTS-012 NA NA NA NA LTS-012 chr15 77402462 77402709 248 * PEAK1 NA 0 NA 0.952 1 NA NA NA NA NA LTS-012 chr15 77402710 79048821 1646112 * c(MIR5003, HMG20A, CIB2, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, TBC1D2B, ACSBG1, LINGO1-AS1, IDH3A, IREB2, DNAJA4, PSMA4, LOC645752, SH2D7, LOC646938, PEAK1, WDR61, LINC00597, LINGO1, LOC91450) 0.28989339399341 22 0.129007835595446 1.29801941931647 1785 0.748276618020222 4 3 1 -6.80160601164461 LTS-012 chr15 79048822 79054822 6001 * ADAMTS7 NA 0 NA 1.826 1 NA NA NA NA NA LTS-012 chr15 79054823 79585672 530850 * c(MORF4L1, ADAMTS7, CTSH, ANKRD34C, MIR184, RASGRF1, ANKRD34C-AS1) 0.339836479785101 21 0.0609660326973729 1.73626327521322 500 1.00577746337232 6 4 2 -6.76669832465648 LTS-012 chr15 79585673 89402705 9817033 * c(NA, UBE2Q2P2, MIR1276, MIR1179, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MTHFS, AKAP13, C15orf40, AGBL1, WHAMM, FSD2, LINC00052, CFAP161, ACAN, FAH, MESDC2, KIAA1024, TMED3, SEC11A, MRPL46, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LOC338963, TMC3, IL16, ISG20, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR7-2, GOLGA6L9, DNM1P41, LOC440300, NMB, NTRK3, NA NA NA NA NA NA NA NA NA LTS-012 HDGFRP3, PDE8A, BTBD1, TM6SF1, ZFAND6, SCAND2P, ZSCAN2, DET1, ADAMTSL3, CEMIP, ALPK3, ABHD17C, MESDC1, BCL2A1, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, BNC1, GOLGA6L10, AEN, EFTUD1P1, MRPS11, SCARNA15, MIR549A, AGBL1-AS1, EFL1, STARD5, AP3B2, FAM103A1, MEX3B, WDR73, SLC28A1, HOMER2, ZNF592, ARNT2) 0.33328924337918 187 0.0966288563260365 1.35553219640476 6014 0.705933617647783 3 2 1 -6.87608539762519 LTS-012 NA NA NA NA LTS-012 chr15 89402706 89403566 861 * ACAN NA 0 NA 2.188 1 NA NA NA NA NA LTS-012 chr15 89403567 89442408 38842 * c(HAPLN3, ACAN, MFGE8) 0.332556503416718 8 0.00736303508848665 2.26270708830982 114 1.12669676770192 18 12 6 -7.11117679839573 LTS-012 chr15 89442409 102173279 12730871 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, MESP2, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, SLCO3A1, LINC00928, FAM169B, ANPEP, IDH2, ZNF774, IGF1R, ARPIN, KIF7, ZNF710, HDDC3, SPATA41, GDPGP1, FAM174B, LINC01197, NA NA NA NA NA NA NA NA NA LTS-012 MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, CRTC3, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.305662769279474 272 0.0694938223686546 1.53648433056149 8284 0.78191363209631 4 3 1 -6.80001018692897 LTS-012 NA NA NA NA LTS-012 chr15 102173280 102516492 343213 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, TM2D3) 0.289827479418181 11 0.111796975076983 1.23305385239821 365 0.686611996541695 4 3 1 -6.76132914978336 LTS-012 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.215 1 NA NA NA NA NA LTS-012 chr16 81704 97354 15651 * POLR3K 0.477 1 NA 1.50696314896117 15 1.2420648629639 4 4 0 -5.76442372927523 LTS-012 chr16 97355 1278524 1181170 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSG1, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, NA NA NA NA NA NA NA NA NA LTS-012 MCRIP2, RGS11, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.446803209144207 134 0.0613684228572121 1.03312347903462 3782 0.510368527658583 2 1 1 -6.83000427600786 LTS-012 NA NA NA NA LTS-012 chr16 1278525 1292153 13629 * c(TPSB2, TPSAB1) NA 0 NA 0.434349977517919 50 0.441687535689738 1 NA NA -5.76698503745624 LTS-012 chr16 1292154 1859850 567697 * c(MIR3177, NUBP2, TSR3, CLCN7, EME2, MAPK8IP3, TPSD1, C16orf91, HAGH, IGFALS, PTX4, NME3, CRAMP1, CCDC154, UNKL, MRPS34, TPSAB1, UBE2I, TMEM204, GNPTG, BAIAP3, HN1L, SPSB3, IFT140, TELO2) 0.46175751029926 63 0.033886636709261 1.09267189557477 2163 0.552158545052687 2 1 1 -7.25632573630159 LTS-012 chr16 1859851 1877494 17644 * c(HAGH, FAHD1) 0.455 1 NA 1.38203208897131 46 0.481853244541699 3 3 0 -5.76495603852355 LTS-012 chr16 1877495 2650483 772989 * c(MIR940, MIR1225, MIR3178, MIR3677, MIR3180-5, MIR4717, MIR4516, TBL3, RNPS1, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, ABCA3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NDUFB10, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, RPL3L, RPS2, MLST8, HS3ST6, LINC00254, ABCA17P, SNORA78, TSC2, SNHG9, CEMP1, C16orf59, FAHD1, TRAF7, CCNF, ZNF598, SYNGR3, SLC9A3R2) 0.42874686478581 63 0.1061259456205 1.05826765941563 2496 0.47536182042194 2 1 1 -6.78823132116543 LTS-012 chr16 2650484 2650491 8 * PDPK1 NA 0 NA 0.424 1 NA NA NA NA NA LTS-012 chr16 2650492 2732840 82349 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.450952670219866 2 0.111015764646288 0.442564757274075 151 0.295417143166779 2 1 1 -7.02454684089404 LTS-012 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 1.334 1 NA NA NA NA NA LTS-012 chr16 2747831 3339464 591634 * c(LOC100128770, SRRM2-AS1, ZNF263, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, ZNF205-AS1, PRSS27, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, IL32) 0.448356661555501 36 0.0829369764549689 1.09821086925967 1704 1.84459823187916 2 1 1 -6.76595227067608 LTS-012 chr16 3339465 3487051 147587 * c(MTRNR2L4, ZNF263, ZNF597, OR2C1, ZSCAN32, ZNF75A, ZNF174, TIGD7) 0.464632361633797 3 0.0248797106092494 0.804492767314876 381 0.331515895469206 2 1 1 -7.71659343170917 LTS-012 chr16 3487052 16302701 12815650 * c(MIR365A, NPIPA5, MIR548X, MIR3180-4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, TRAP1, VASN, ADCY9, RMI2, NTAN1, FOPNL, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, PDXDC1, CLUAP1, CLEC16A, MGRN1, NOMO1, CARHSP1, MPV17L, TMEM186, ZNF500, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, ABCC6, BCAR4, NA NA NA NA NA NA NA NA NA LTS-012 CIITA, ABCC1, SMIM22, MYH11, NUBP1, PARN, PAM16, TXNDC11, NAGPA, BFAR, PMM2, RRN3, RBFOX1, NDE1, PPL, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, SRL, NPIPA3, C16orf90, TFAP4, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, METTL22, CORO7, ROGDI, NAA60, ATF7IP2, SNN, PLA2G10, NUDT16L1, SLX4, GLYR1, GLIS2, SOCS1, C16orf45, DNAJA3, SNX29, NPIPA1, LITAF, KIAA0430, SEC14L5) 0.425247007616148 214 0.092286077545938 1.11472094598136 8176 0.590822249952119 3 2 1 -7.24698580002234 LTS-012 NA NA NA NA LTS-012 chr16 16302702 27544717 11242016 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR3179-2, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, ITPRIPL2, C16orf82, NSMCE1, PDILT, SMG1, GGA2, NPIPB3, ARL6IP1, PDZD9, ANKS4B, TNRC6A, GP2, NOMO2, IL21R-AS1, GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, FLJ21408, NOMO3, NA NA NA NA NA NA NA NA NA LTS-012 NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, COG7, CCP110, HS3ST4, HS3ST2) 0.426901836795583 136 0.0941991490624828 0.992946669253034 7877 0.505191727345374 2 1 1 -6.99133208855082 LTS-012 NA NA NA NA LTS-012 chr16 27544718 28488943 944226 * c(CLN3, GSG1L, XPO6, KIAA0556, GTF3C1, SBK1) 0.423507996975261 4 0.0419473876818728 1.13828329436651 528 0.518333295621408 2 1 1 -6.86479191951476 LTS-012 chr16 28488944 28506949 18006 * c(CLN3, APOBR) 0 1 NA 1.22294779295379 89 1.54486795701009 3 3 0 -5.76441088349555 LTS-012 chr16 28506950 29679205 1172256 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, ATXN2L, SGF29, IL27, SH2B1, NUPR1, LAT, SNX29P2, SMG1P2, ATP2A1, SLX1A, BOLA2, APOBR, LOC606724, LOC613038, RRN3P2, SPN, SULT1A2, SULT1A1, SULT1A3, TUFM, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19) 0.307112342213315 9 0.207004227009982 1.1088945159899 1317 0.554076213691291 3 2 1 -6.80127893843838 LTS-012 chr16 29679206 29706444 27239 * c(SLX1B-SULT1A4, QPRT, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN) 0.496 1 NA 1.64191541341084 59 1.48918949827641 4 4 0 -5.7644210616587 LTS-012 chr16 29706445 30198597 492153 * c(SLX1B-SULT1A4, CDIPT, CORO1A, PRRT2, TMEM219, C16orf92, ALDOA, QPRT, KCTD13, ASPHD1, SEZ6L2, C16orf54, INO80E, KIF22, MAZ, SMG1P2, CDIPT-AS1, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, ZG16, TBX6, GDPD3, PAGR1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.459183123481467 22 0.0377559949082944 1.12085249691987 1509 0.547220158626357 2 1 1 -7.11594586563596 LTS-012 chr16 30198598 30198688 91 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.508 1 NA NA NA NA NA LTS-012 chr16 30198689 30217589 18901 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.50179224068494 65 0.324301462317916 1 NA NA -5.76556664942798 LTS-012 chr16 30217590 30347601 130012 * c(SMG1P2, SMG1P5, LOC613037, LOC613038) NA 0 NA 1.212 1 NA NA NA NA NA LTS-012 chr16 30347602 31580552 1232951 * c(MIR762, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, SRCAP, STX1B, ZNF689, COX6A2, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, SEPHS2, ZNF629, FUS, TBC1D10B, PYDC1, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, YBX3P1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, PRSS8, FBRS, C16orf58, SLC5A2, ZNF747, SNORA30, STX4, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, ZNF768, ZNF668, NA NA NA NA NA NA NA NA NA LTS-012 ARMC5, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.459821478543245 28 0.0528809559543462 1.07341144439478 4112 0.485958373517149 2 1 1 -7.01437864222263 LTS-012 NA NA NA NA LTS-012 chr16 31580553 31580678 126 * YBX3P1 NA 0 NA 0.596 1 NA NA NA NA NA LTS-012 chr16 31580679 31770723 190045 * c(CLUHP3, ZNF720, YBX3P1) 0.487561568383767 4 0.0140326999065278 0.60751954494835 130 0.243459464128676 2 1 1 -11.4193723512048 LTS-012 chr16 31770724 31805156 34433 * ZNF720 NA 0 NA 0.663988061830515 45 0.32942883230761 1 NA NA -5.77033474538487 LTS-012 chr16 31805157 31805267 111 * character(0) NA 0 NA 1.016 1 NA NA NA NA NA LTS-012 chr16 31805268 32890081 1084814 * c(ZNF267, SLC6A10P, LOC390705, NA, TP53TG3D) 0.292 1 NA 0.961722095762122 107 0.442349934006637 2 2 0 -5.78017232098132 LTS-012 chr16 32890082 33961379 1071298 * c(SLC6A10P, LOC390705, LINC00273) 0.302429434146627 21 0.111170868057967 1.39597481125911 200 1.17888176484217 4 3 1 -6.75639997483234 LTS-012 chr16 33961380 33961395 16 * LINC00273 0.371 1 NA 6.03 1 NA NA NA NA NA LTS-012 chr16 33961396 33962379 984 * LINC00273 0.315450734121114 61 0.0930896242450065 3.81492444089386 83 2.20210911436562 13 9 4 -6.7330967343367 LTS-012 chr16 33962380 33965652 3273 * LINC00273 0.35210605139603 3 0.0410528115155751 0.781193187057379 32 0.78917863014799 6 4 2 -6.74157746785251 LTS-012 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.923363201040834 119 0.558919464639838 2 NA NA -5.76550656315788 LTS-012 chr16 46508169 46629594 121426 * c(ANKRD26P1, SHCBP1) 0.45 1 NA 0.890856781832057 137 0.456534678445618 2 2 0 -5.76443040161817 LTS-012 chr16 46629595 58147654 11518060 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, KATNB1, CES1, CETP, NUDT21, ADCY7, C16orf78, SNX20, CNGB1, CYLD, CPNE2, ADGRG5, CES5A, ADGRG3, ZNF423, RPGRIP1L, ARL2BP, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, CFAP20, BRD7, MT1DP, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, NA NA NA NA NA NA NA NA NA LTS-012 MT3, PLLP, CES1P1, PHKB, POLR2C, LPCAT2, HEATR3, OGFOD1, DOK4, VPS35, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, SIAH1, SLC6A2, SLC12A3, FTO, IRX6, IRX3, USB1, SHCBP1, FAM192A, CHD9, ITFG1, NETO2, LONP2, NLRC5, DRC7, CAPNS2, MT4, GPT2, ABCC11, NKD1, CBLN1, RSPRY1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ) 0.417925244549934 110 0.0915140923988741 0.936848604359577 8233 0.483275452184729 2 1 1 -6.79729846253892 LTS-012 NA NA NA NA LTS-012 chr16 58147655 70161298 12013644 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, PRSS54, CNOT1, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, HSD11B2, NA NA NA NA NA NA NA NA NA LTS-012 HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, SLC38A7, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, SETD6, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.399596649363644 112 0.0767024741865088 0.869078619751868 8648 1.06851673654927 2 1 1 -6.83353646782123 LTS-012 NA NA NA NA LTS-012 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.396 1 NA NA NA NA NA LTS-012 chr16 70162673 70190826 28154 * c(CLEC18C, PDPR) 0.483 1 NA 0.44709902047503 102 0.23884421190734 1 1 0 -5.77857585097064 LTS-012 chr16 70190827 70190879 53 * c(CLEC18C, PDPR) NA 0 NA 0.922 1 NA NA NA NA NA LTS-012 chr16 70190880 71065408 874529 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, PDPR, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.440495923962539 70 0.0814356189968976 0.953535350670607 1727 0.46146278468433 2 1 1 -6.75161297944111 LTS-012 chr16 71065409 72130251 1064843 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, HYDIN, TXNL4B, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, MARVELD3, DHX38, IST1) 0.420276540415598 41 0.0945211358477627 0.816580354090696 1619 0.421374765533032 2 1 1 -6.77168772626135 LTS-012 chr16 72130252 74333488 2203237 * c(LINC01568, HCCAT5, ZFHX3, PSMD7, PMFBP1, DHX38) 0.424565505089375 12 0.0339808323867584 1.0922416517035 681 0.455130225852158 2 1 1 -6.98545796085437 LTS-012 chr16 74333489 74333936 448 * PSMD7 NA 0 NA 0.633 1 NA NA NA NA NA LTS-012 chr16 74333937 85011622 10677686 * c(LOC100129617, SYCE1L, MIR3182, MIR4720, MIR4719, CDH13, CLEC3A, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, SLC38A8, CTRB1, ADAD2, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, LOC283922, NUDT7, OSGIN1, HSBP1, HSD17B2, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, RFWD3, ZDHHC7, CENPN, CMC2, PSMD7, VAT1L, TLDC1, NA NA NA NA NA NA NA NA NA LTS-012 WFDC1, FA2H, TMEM231, WDR59, KLHL36, CMIP, GAN, DYNLRB2, HSDL1, CRISPLD2, ZNRF1, CNTNAP4, MBTPS1, TAF1C, USP10, KCNG4, SDR42E1, BCAR1, ATP2C2) 0.428580593796974 148 0.0638172045359122 0.914848490831154 5589 0.458082815675832 2 1 1 -6.74436194097192 LTS-012 NA NA NA NA LTS-012 chr16 85011623 85011640 18 * ZDHHC7 NA 0 NA 0.815 1 NA NA NA NA NA LTS-012 chr16 85011641 85012789 1149 * ZDHHC7 NA 0 NA 1.319 1 NA NA NA NA NA LTS-012 chr16 85012790 85105554 92765 * c(ZDHHC7, KIAA0513) 0.35 1 NA 1.16035580891297 37 0.615613945610421 3 3 0 -5.76503822112366 LTS-012 chr16 85105555 90123940 5018386 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, NA NA NA NA NA NA NA NA NA LTS-012 LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FBXO31, SLC7A5, CDT1, MAP1LC3B, SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, KIAA0513, PIEZO1) 0.385494714784402 153 0.0909534378887191 1.07554923547624 5705 0.683958396174467 3 2 1 -6.90233018774753 LTS-012 NA NA NA NA LTS-012 chr16 90123941 90161242 37302 * PRDM7 NA 0 NA 0.809486994231916 78 0.618220502930055 2 NA NA -5.76503611269833 LTS-012 chr17 6004 6115 112 * DOC2B 0.172 1 NA 1.14888415821008 3 0.632099939355585 3 3 0 -5.76441108066721 LTS-012 chr17 6116 2966954 2960839 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, OR1D5, DOC2B, MIR22HG, NA NA NA NA NA NA NA NA NA LTS-012 SCARF1, RPH3AL, SGSM2) 0.175979935880679 99 0.0565214589751125 0.701893371854381 3621 0.425094466582504 1 1 0 -7.27828907536293 LTS-012 NA NA NA NA LTS-012 chr17 2966955 2995276 28322 * character(0) NA 0 NA 0.345 1 NA NA NA NA NA LTS-012 chr17 2995277 3379677 384401 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.183341343754214 13 0.0609871781396377 0.43701654806481 288 0.249340156870884 1 1 0 -6.95941832668508 LTS-012 chr17 3379678 3384912 5235 * c(ASPA, SPATA22) NA 0 NA 0.745 1 NA NA NA NA NA LTS-012 chr17 3384913 10233732 6848820 * c(LOC100128288, C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, NA NA NA NA NA NA NA NA NA LTS-012 DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ASPA, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 UBE2G1, TRPV1, ZNF232, MIS12, PHF23, CTC1, NDEL1, PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.175127946906464 294 0.0652823608870332 0.672798307664382 13341 0.33996656463611 1 1 0 -7.84626390470138 LTS-012 NA NA NA NA LTS-012 chr17 10233733 10233735 3 * MYH13 NA 0 NA 0.375 1 NA NA NA NA NA LTS-012 chr17 10233736 10447466 213731 * c(MYH1, MYH2, MYH4, MYH8, MYH13) 0.22301715618175 3 0.0328836332137027 0.501197284403322 814 0.192288072812604 1 1 0 -7.21578855702598 LTS-012 chr17 10447467 10448749 1283 * MYH2 NA 0 NA 1.368 1 NA NA NA NA NA LTS-012 chr17 10448750 15406489 4957740 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, COX10, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH2, MYH3, PMP22, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.17757764919118 55 0.0794242455073435 0.619081223687414 2127 0.327083132397821 1 1 0 -7.05712945471391 LTS-012 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.149 1 NA NA NA NA NA LTS-012 chr17 15440243 15526862 86620 * c(TVP23C-CDRT4, TRIM16, TVP23C, CDRT1) 0.202198670790919 11 0.0559965908053176 0.342539077143232 254 0.243202521343017 1 1 0 -6.94726736882336 LTS-012 chr17 15526863 15526878 16 * TRIM16 NA 0 NA 0.541 1 NA NA NA NA NA LTS-012 chr17 15526879 15878938 352060 * c(TRIM16, ADORA2B, TBC1D26, MEIS3P1, ZNF286A, CDRT15P2) 0.207853942979061 12 0.084394231814955 0.476119711352955 382 0.711941131126913 1 1 0 -6.76019390650574 LTS-012 chr17 15878939 18315257 2436319 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, LRRC75A, LLGL1, KRT16P2, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF287, ZNF624, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A) 0.166307422466395 60 0.0773634097952077 0.660090971729094 3762 0.341124168315818 1 1 0 -7.15192843140185 LTS-012 chr17 18315258 18710079 394822 * c(FBXW10, TRIM16L, USP32P2, FOXO3B, TBC1D28, CCDC144B, KRT17P5, TVP23B, LGALS9C, KRT16P1, ZNF286B, FAM106A) 0.257532630399578 22 0.133520301810889 0.440463228428214 567 0.309581687195575 1 1 0 -6.99976956514829 LTS-012 chr17 18710080 18769081 59002 * PRPSAP2 NA 0 NA 0.656 1 NA NA NA NA NA LTS-012 chr17 18769082 20911173 2142092 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.182053753589167 35 0.0762617341845852 0.621237117955363 2056 0.339976028534697 1 1 0 -6.87829417418201 LTS-012 chr17 20911174 21191421 280248 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) NA 0 NA 0.632712635639187 155 0.237293410777653 1 NA NA -5.81313283314678 LTS-012 chr17 21191422 21194679 3258 * MAP2K3 NA 0 NA 1.49 1 NA NA NA NA NA LTS-012 chr17 21194680 21194769 90 * MAP2K3 0.36 1 NA 1.45474152126736 3 0.848346627269773 4 4 0 -5.76441064001247 LTS-012 chr17 21194770 21431659 236890 * c(C17orf51, KCNJ12, MAP2K3) 0.362515085377596 81 0.0729319973301698 1.21743036545038 254 0.764149460681775 3 2 1 -6.73338922634862 LTS-012 chr17 21431660 22066835 635176 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.324320894488118 12 0.0951038905618482 0.574504622019833 210 0.342135818526099 1 1 0 -7.69767879775093 LTS-012 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.454 1 NA NA NA NA NA LTS-012 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.16 1 NA 0.585867727027709 23 0.169038176570679 1 1 0 -5.76493848034554 LTS-012 chr17 25630389 27494082 1863694 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, TIAF1, NA NA NA NA NA NA NA NA NA LTS-012 PIGS, TRAF4, KIAA0100) 0.183605624750429 35 0.0860254212965197 0.631773458679015 3538 0.319715859853106 1 1 0 -6.91198685491192 LTS-012 NA NA NA NA LTS-012 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.165 1 NA NA NA NA NA LTS-012 chr17 27528620 27530504 1885 * character(0) 0.24583156030193 2 0.0848528137423857 0.251592271335381 45 0.106273746009582 1 1 0 -7.01447349284796 LTS-012 chr17 27530505 27573746 43242 * character(0) NA 0 NA 0.499 1 NA NA NA NA NA LTS-012 chr17 27573747 29325624 1751878 * c(MIR3184, MIR4523, ABHD15, ANKRD13B, CPD, CRYBA1, LRRC37BP1, TBC1D29, GIT1, EFCAB5, TMIGD1, SUZ12P1, MIR423, DPRXP4, CRLF3, ADAP2, NUFIP2, TAOK1, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, CORO6, SSH2, TP53I13, GOSR1) 0.166943941406618 8 0.075871602065595 0.600635104835055 2086 0.303370604329251 1 1 0 -6.87191796164595 LTS-012 chr17 29325625 29326837 1213 * RNF135 NA 0 NA 0.448343464904203 23 0.185329639018734 1 NA NA -5.76539963249925 LTS-012 chr17 29326838 29374145 47308 * RNF135 NA 0 NA 0.216 1 NA NA NA NA NA LTS-012 chr17 29374146 29486152 112007 * c(MIR4733, NF1) 0.343 1 NA 0.244362650905329 27 0.137622682901486 0 0 0 -5.82019466888188 LTS-012 chr17 29486153 29694408 208256 * c(EVI2A, EVI2B, NF1, OMG) 0.405277566643876 8 0.096495373686292 0.199479371279575 417 0.121815347750647 0 0 0 -6.82220135815887 LTS-012 chr17 29694409 29700963 6555 * NF1 NA 0 NA 0.542 1 NA NA NA NA NA LTS-012 chr17 29700964 29704002 3039 * NF1 0.286 1 NA 0.53594834068027 61 0.155775467179089 1 1 0 -5.76451703558813 LTS-012 chr17 29704003 29705947 1945 * NF1 0.196 1 NA 0.680925686356675 18 0.230524976316846 1 1 0 -5.76530286287694 LTS-012 chr17 29705948 30185837 479890 * c(MIR365B, MIR4724, MIR4725, MIR193A, NF1, COPRS, RAB11FIP4) 0.141092924232951 9 0.0356853533602295 0.663018667744754 291 0.356343169916056 2 2 0 -7.13565131391718 LTS-012 chr17 30185838 30190535 4698 * c(COPRS, UTP6) NA 0 NA 1.47916667909901 44 0.786072522126479 4 NA NA -5.76442992818037 LTS-012 chr17 30190536 34433730 4243195 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MYO1D, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, SH3GL1P1, NA NA NA NA NA NA NA NA NA LTS-012 SNORD7, MIR632, ZNF207, MMP28, TAF15, CDK5R1, ZNF830, SLFN11, RASL10B) 0.1873155732459 76 0.0759621547046187 0.577023216712729 3918 0.345316399287818 1 1 0 -6.76488231847966 LTS-012 NA NA NA NA LTS-012 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.069 1 NA NA NA NA NA LTS-012 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.0817282286914654 39 0.0586464049172377 0 NA NA -11.4250015856807 LTS-012 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.604 1 NA NA NA NA NA LTS-012 chr17 34842415 36233997 1391583 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.195923897125378 12 0.0720389204569729 0.606969282111269 1586 0.373375032603542 1 1 0 -6.77834705926584 LTS-012 chr17 36233998 36462656 228659 * c(YWHAEP7, LOC440434, MRPL45) 0.307248523884609 4 0.152081118705337 0.293852884832712 93 0.133597917122837 0 0 0 -7.76336975869007 LTS-012 chr17 36462657 36474566 11910 * MRPL45 NA 0 NA 0.89 1 NA NA NA NA NA LTS-012 chr17 36474567 38519618 2045052 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, CISD3, GSDMA, GRB7, SOCS7, MSL1, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, THRA, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, MIEN1, NA NA NA NA NA NA NA NA NA LTS-012 MRPL45, FBXL20, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.188267807006171 56 0.0749927788731481 0.66894820915707 4565 0.33674218828103 1 1 0 -7.0815331823726 LTS-012 NA NA NA NA LTS-012 chr17 38519619 39389282 869664 * c(KRTAP4-9, KRTAP4-7, CCR7, GJD3, KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, IGFBP4, KRT26, KRT10, KRT12, KRT39, KRT20, RARA, KRTAP4-11, SMARCE1, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP4-4, TNS4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.185564831850117 50 0.0716481083391001 0.579795579220805 1798 0.374554208246905 1 1 0 -6.74681735086241 LTS-012 chr17 39389283 39431928 42646 * c(KRTAP9-6, KRTAP9-9, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.319342433377859 7 0.0366917663009798 0.363859670794621 58 0.214736916798618 3 2 1 -8.15382072741722 LTS-012 chr17 39431929 39432216 288 * KRTAP9-7 NA 0 NA 1.18 1 NA NA NA NA NA LTS-012 chr17 39432217 44336603 4904387 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, KRTAP9-7, KRTAP16-1, LOC100505782, GJC1, KRTAP29-1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, NA NA NA NA NA NA NA NA NA LTS-012 KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, KRT42P, PTRF, NKIRAS2, COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, CCDC103, KRT33B, KRT34, KRT35, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 FKBP10, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.182001557099697 156 0.0592392085498384 0.657022425030591 9249 0.365174480247098 1 1 0 -7.30941847457322 LTS-012 NA NA NA NA LTS-012 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.254 1 NA NA NA NA NA LTS-012 chr17 44336710 44782233 445524 * character(0) 0.286 1 NA 0.28640074653869 64 0.256133690212562 0 0 0 -6.07775059263314 LTS-012 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.491 1 NA NA NA NA NA LTS-012 chr17 44788332 45682703 894372 * c(MIR5089, EFCAB13, ITGB3, RPRML, MYL4, MRPL45P2, WNT3, WNT9B, NPEPPS, GOSR2, CDC27) 0.226812846226277 40 0.106837520418768 0.677243666986404 862 0.378140680819129 1 1 0 -6.93159443970908 LTS-012 chr17 45682704 45682802 99 * NPEPPS NA 0 NA 0.67 1 NA NA NA NA NA LTS-012 chr17 45682803 45774072 91270 * c(KPNB1, NPEPPS, TBKBP1) 0.192632422817748 2 0.0113137084989848 0.803456578894666 174 0.333187888921998 1 1 0 -6.80333973035029 LTS-012 chr17 45774073 45786452 12380 * TBKBP1 0.091 1 NA 0.981759963832697 30 0.354610422469698 2 2 0 -5.76488374170242 LTS-012 chr17 45786453 46474182 687730 * c(MIR1203, CBX1, OSBPL7, MRPL10, SNX11, TBX21, MIR152, NFE2L1, COPZ2, PNPO, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, TBKBP1) 0.12961482500149 27 0.0485745821236789 0.8106438709593 870 0.376820229217348 2 2 0 -6.78617923735261 LTS-012 chr17 46474183 46507297 33115 * SKAP1 NA 0 NA 1.929 1 NA NA NA NA NA LTS-012 chr17 46507298 57650621 11143324 * c(TOM1L1, MIR3185, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4736, HOXB-AS1, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, HSF5, OR4D2, MSI2, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, PPM1E, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, OR4D1, GIP, GNGT2, TTLL6, LOC284080, C17orf47, GDPD1, HLF, HOXB1, HOXB2, HOXB3, NA NA NA NA NA NA NA NA NA LTS-012 HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, C17orf67, SKA2, PRAC2, ITGA3, HILS1, RNF126P1, YPEL2, TOB1-AS1, LPO, CUEDC1, HOXB-AS3, MIR10A, MIR142, MIR196A1, MIR301A, MPO, TRIM37, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, MRPS23, LUC7L3, PHB, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, PRR11, TEX14, CA10, PCTP, RAD51C, SCPEP1, XYLT2, SRSF1, SGCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SPATA20, UBE2Z, NME1-NME2, SUPT4H1, FLJ45513, MIR454, TRIM25, VEZF1, DHX40, ACSF2, FAM117A, COIL, AKAP1, EPX, SPOP, MYCBPAP, PRAC1, KIF2B, PPP1R9B, DGKE, SKAP1, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.0893398390106034 112 0.0409497565454614 1.17364659335929 8727 0.67939239067258 3 3 0 -6.77690542594486 LTS-012 NA NA NA NA LTS-012 chr17 57650622 57651133 512 * DHX40 NA 0 NA 0.798 1 NA NA NA NA NA LTS-012 chr17 57651134 58176778 525645 * c(MIR4737, CLTC, MIR21, RNFT1, TUBD1, PTRH2, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, DHX40, VMP1) 0.0870705005815544 8 0.029657268441793 1.01039836605737 835 0.572344443759816 3 3 0 -6.77274842346359 LTS-012 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.327 1 NA NA NA NA NA LTS-012 chr17 58177075 58179422 2348 * LOC653653 NA 0 NA 0.423493243361978 53 0.173113642129778 1 NA NA -5.76791594266296 LTS-012 chr17 58179423 58179474 52 * LOC653653 NA 0 NA 0.754 1 NA NA NA NA NA LTS-012 chr17 58179475 60689796 2510322 * c(APPBP2, TLK2, C17orf64, EFCAB3, METTL2A, NACA2, C17orf82, TBC1D3P2, BCAS3, INTS2, LOC653653, SCARNA20, TBX2, CA4, BRIP1, USP32, PPM1D, TBX4, MED13) 0.0992963794950558 12 0.0260644597221209 1.07779570145958 1482 0.516382161989895 3 3 0 -6.97065410680703 LTS-012 chr17 60689797 60689835 39 * TLK2 NA 0 NA 1.209 1 NA NA NA NA NA LTS-012 chr17 60689836 61864462 1174627 * c(DCAF7, TLK2, DDX42, CYB561, MARCH10, ACE, TANC2, MAP3K3, TACO1, CCDC47, LOC729683, LIMD2, KCNH6, STRADA, MRC2) 0.0803370138108469 30 0.0334184373366408 1.40687939055203 1038 0.747843748790072 3 3 0 -6.77730806452678 LTS-012 chr17 61864463 69334662 7470200 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, NA NA NA NA NA NA NA NA NA LTS-012 PSMC5, PSMD12, SCN4A, SMURF2, SMARCD2, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, PRR29, CD79B, HELZ) 0.0840946516188037 64 0.0444275649990637 1.18200729422518 4481 0.539678899087627 3 3 0 -6.76931869320893 LTS-012 NA NA NA NA LTS-012 chr17 69334663 69334841 179 * character(0) NA 0 NA 2.65 1 NA NA NA NA NA LTS-012 chr17 69334842 80350485 11015644 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, NA NA NA NA NA NA NA NA NA LTS-012 TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.0888982041593786 377 0.0332927012876251 1.37730055473654 14939 0.766512045057602 3 3 0 -6.85873061181603 LTS-012 NA NA NA NA LTS-012 chr17 80350486 80386556 36071 * c(HEXDC, OGFOD3) 0.080465124650336 2 0.0487903679018718 3.0658127429193 63 1.77916164534487 16 15 1 -6.73603213229173 LTS-012 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.017 1 NA NA NA NA NA LTS-012 chr17 80391535 81052254 660720 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0849133295369267 22 0.0296913414580035 1.56792812311002 930 0.719196598247675 3 3 0 -6.77832010213026 LTS-012 chr17 81052255 81083625 31371 * METRNL NA 0 NA 1.22592732965376 7 0.511490538943362 3 NA NA -5.76441795918323 LTS-012 chr18 116845 121139 4295 * ROCK1P1 0.157 1 NA 0.375763355699651 25 0.146892443645002 1 1 0 -5.78277692798289 LTS-012 chr18 121140 122320 1181 * ROCK1P1 NA 0 NA 0.258006533021991 29 0.133277803502323 0 NA NA -5.76570561353044 LTS-012 chr18 122321 158470 36150 * character(0) NA 0 NA 1.061 1 NA NA NA NA NA LTS-012 chr18 158471 14866503 14708033 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, CETN1, RALBP1, AFG3L2, RAB31, CIDEA, ADCYAP1, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, CLUL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, NA NA NA NA NA NA NA NA NA LTS-012 TYMSOS, C18orf61, CEP192, ENOSF1, LINC00470, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, TYMS, YES1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, COLEC12, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, USP14, L3MBTL4, VAPA, DLGAP1, LPIN2, THOC1, PPP4R1) 0.180933260304799 150 0.0659700440458349 0.6029208185421 6773 0.360278074488797 1 1 0 -7.16167009670032 LTS-012 NA NA NA NA LTS-012 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.924256273314344 33 0.634952710897243 2 NA NA -5.76458727732371 LTS-012 chr18 18529727 18535131 5405 * ROCK1 NA 0 NA 0.312804260283517 54 0.120664714996321 0 NA NA -5.79521712746627 LTS-012 chr18 18535132 21001376 2466245 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, CABLES1) 0 1 NA 0.591554801111471 1142 0.316192564035953 1 1 0 -5.8189701429953 LTS-012 chr18 21001377 33721325 12719949 * c(CDH2, ZSCAN30, MIR302F, MIR320C2, MIR3975, DSG2-AS1, ZNF271P, MAPRE2, OSBPL1A, INO80C, TTC39C, PSMA8, SLC25A52, DSG4, AQP4-AS1, ANKRD29, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, CABYR, KCTD1, C18orf8, AQP4, CCDC178, LAMA3, MIR187, MEP1B, WBP11P1, NPC1, RNF138, RNF125, RPRD1A, ELP2, IMPACT, KLHL14, HRH4, GAREM1, SS18, TAF4B, TTR, PCAT18, LOC729950, ZNF24, NA NA NA NA NA NA NA NA NA LTS-012 ASXL3, CHST9, C18orf21, ZNF397, TMEM241, NOL4, RIOK3, B4GALT6) 0.178352643005854 59 0.0734864022457247 0.574925941814412 5484 0.315758130193445 1 1 0 -6.83848567379713 LTS-012 NA NA NA NA LTS-012 chr18 33721326 33721376 51 * ELP2 NA 0 NA 0.777 1 NA NA NA NA NA LTS-012 chr18 33721377 48450503 14729127 * c(SNORD58C, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, SKA1, CFAP53, TPGS2, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, SMAD2, SMAD7, MBD1, ME2, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, PIK3C3, DYM, MOCOS, ELP2, MAPK4, CELF4, KIAA1328, EPG5, RIT2, RPL17, KC6, MIR924HG, NA NA NA NA NA NA NA NA NA LTS-012 SKOR2, SLC14A1, SCARNA17, SYT4, FHOD3, SLC14A2, KATNAL2, MRO, HDHD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.162713949187383 65 0.0712855849059585 0.652641013236821 4639 0.472138333703278 1 1 0 -7.71097047468451 LTS-012 NA NA NA NA LTS-012 chr18 48450504 52943036 4492533 * c(LINC01630, POLI, STARD6, C18orf54, DCC, DYNAP, SMAD4, ME2, MEX3C, ELAC1, RAB27B, SNORA37, TCF4, CCDC68, MBD2) 0.236003373319514 15 0.099899091944965 0.502184091971746 1335 0.234011455762906 1 1 0 -7.31880812517285 LTS-012 chr18 52943037 61271839 8328803 * c(LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TCF4, TNFRSF11A, SERPINB12, SEC11C, TXNL1, ONECUT2, VPS4B) 0.184696725477655 106 0.0903811441227539 0.59934850921225 4095 0.393339370244481 1 1 0 -6.91108929634012 LTS-012 chr18 61271840 61304514 32675 * SERPINB4 NA 0 NA 0.213 1 NA NA NA NA NA LTS-012 chr18 61304515 61328570 24056 * c(SERPINB3, SERPINB4) 0.197 1 NA 0.298209896772816 98 0.194886980308139 0 0 0 -5.80431040641992 LTS-012 chr18 61328571 61377371 48801 * c(SERPINB3, SERPINB11) NA 0 NA 0.595 1 NA NA NA NA NA LTS-012 chr18 61377372 70532068 9154697 * c(CDH7, LINC01541, MIR5011, CD226, CBLN2, DOK6, LINC00305, RTTN, HMSD, LOC284294, CDH19, LINC01538, SERPINB2, SERPINB8, SERPINB10, TMX3, LOC643542, CCDC102B, NETO1, SERPINB7, SERPINB11, DSEL, SOCS6) 0.216035108273202 41 0.0968148849672379 0.497028404288071 1676 0.235984030477945 1 1 0 -7.81843393720423 LTS-012 chr18 70532069 70532074 6 * NETO1 NA 0 NA 0.588 1 NA NA NA NA NA LTS-012 chr18 70532075 77918221 7386147 * c(PARD6G-AS1, LOC100131655, LOC100505817, RBFADN, TSHZ1, TXNL4A, FAM69C, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, ZNF516) 0.182728219190533 57 0.0563068982628234 0.650815083783743 2577 0.348945789954873 1 1 0 -7.53554505756559 LTS-012 chr18 77918222 78005362 87141 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.720826414288162 43 0.290619809638216 2 NA NA -5.79406136931507 LTS-012 chr19 107416 373897 266482 * c(LINC01002, THEG, MIER2, OR4F17, PLPP2) 0.147 1 NA 0.776260613019035 139 0.34925105608609 2 2 0 -5.79196106804176 LTS-012 chr19 373898 2812221 2438324 * c(MED16, LOC100288123, MIR1909, MIR1227, MIR3187, MIR4321, MIR4745, FSTL3, APC2, ABCA7, UQCR11, IZUMO4, SCAMP4, ADAT3, CIRBP, GRIN3B, JSRP1, MOB3A, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, FGF22, GNG7, ODF3L2, MKNK2, GPX4, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, NA NA NA NA NA NA NA NA NA LTS-012 ONECUT3, MEX3D, PRSS57, GADD45B, OAZ1, PALM, THEG, ATP5D, LSM7, MBD3, POLR2E, POLRMT, PCSK4, C19orf24, PLEKHJ1, BTBD2, RNF126, PRTN3, AZU1, SPPL2B, PTBP1, WDR18, REXO1, HCN2, RPS15, SGTA, LINGO3, STK11, BSG, TCF3, THOP1, PLPPR3, MADCAM1, SF3A2, ABHD17A, KLF16, DOT1L, KISS1R, LMNB2, MUM1, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.182080888062009 192 0.0545880245243036 0.758716904320401 5412 0.412945339480052 1 1 0 -7.48758006933187 LTS-012 NA NA NA NA LTS-012 chr19 2812222 2934782 122561 * c(ZNF554, ZNF57, ZNF555, ZNF77, THOP1, ZNF556) 0.166789807944062 3 0.0161658075373095 0.492469831022097 209 0.203194603926328 1 1 0 -8.0758367460974 LTS-012 chr19 2934783 2934824 42 * ZNF77 NA 0 NA 0.578 1 NA NA NA NA NA LTS-012 chr19 2934825 4859783 1924959 * c(C19orf71, DPP9-AS1, CHAF1A, MIR4746, EBI3, PLIN3, HMG20B, SEMA6B, MRPL54, LRG1, TMIGD2, TNFAIP8L1, MFSD12, GIPC3, TICAM1, DAPK3, AES, ANKRD24, EEF2, ZFR2, PIP5K1C, SNORD37, TJP3, NMRK2, GNA11, GNA15, SMIM24, MIR7-3HG, CACTIN-AS1, MIR7-3, MATK, PLIN5, NFIC, ZBTB7A, FZR1, SIRT6, PIAS4, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, NCLN, SHD, ZNF77, CACTIN, CELF5, SH3GL1, TBXA2R, MIR637, TLE2, PLIN4, FSD1, NA NA NA NA NA NA NA NA NA LTS-012 TLE6, UBXN6, DOHH, CREB3L3, HDGFRP2, RAX2, MPND, ATCAY, S1PR4, DPP9, APBA3) 0.178369888609094 109 0.0697851686158999 0.761474948950163 3487 0.604997925437184 1 1 0 -7.05664860374672 LTS-012 NA NA NA NA LTS-012 chr19 4859784 4859891 108 * PLIN3 NA 0 NA 1.385 1 NA NA NA NA NA LTS-012 chr19 4859892 4891016 31125 * c(PLIN3, ARRDC5) 0 1 NA 1.17929682104001 9 1.0783378928291 3 3 0 -5.76444902176737 LTS-012 chr19 4891017 4909629 18613 * c(UHRF1, ARRDC5) 0.423 1 NA 1.24208161391175 37 0.384382430468476 3 3 0 -5.76441067037746 LTS-012 chr19 4909630 8807832 3898203 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4999, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, ZNRF4, PRR22, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ARHGEF18, FUT3, FUT5, FUT6, KANK3, TINCR, CATSPERD, RPL36, ACTL9, SLC25A41, MBD3L5, UHRF1, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, VMAC, NA NA NA NA NA NA NA NA NA LTS-012 CTXN1, MLLT1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, NRTN, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, PSPN, RETN, GPR108, DUS3L, XAB2, MCOLN1, CAMSAP3, PTPRS, RFX2, RPS28, SAFB, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, ACSBG2, ADAMTS10, CLPP, CAPS, PRAM1, ALKBH7, ZNF414, FBN3, RANBP3, KHSRP, TNFSF14, TNFSF9, RAB11B, CRB3, PEX11G, TRIP10, LONP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SAFB2, CD70) 0.448816292517868 218 0.0646390347658194 1.22988498810674 6152 0.709606121267708 4 2 2 -7.06052951977476 LTS-012 NA NA NA NA LTS-012 chr19 8807833 9003640 195808 * c(ZNF558, ACTL9, OR2Z1, MBD3L1, MUC16) 0.449413791868039 7 0.0138306078783875 1.01885460982702 281 0.54768447772214 2 1 1 -7.72033871751784 LTS-012 chr19 9003641 9005063 1423 * MUC16 0 1 NA 1.06625138968723 11 0.580525764834226 3 3 0 -5.76446707949562 LTS-012 chr19 9005064 9024998 19935 * MUC16 0.337074702035062 13 0.0972752504955621 1.15850691928961 144 0.989932928212886 6 4 2 -6.74655753167239 LTS-012 chr19 9024999 9048342 23344 * MUC16 0.414 1 NA 0.842771954417289 99 0.386139854214748 2 2 0 -5.7647841368565 LTS-012 chr19 9048343 10200722 1152380 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, C3P1, OR7G2, OR7G3, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2, MUC16) 0.437665310865472 59 0.0903590215537679 0.912120573736372 2110 0.508401834269725 2 1 1 -6.73782756217682 LTS-012 chr19 10200723 11687420 1486698 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, NA NA NA NA NA NA NA NA NA LTS-012 PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.446788563204931 89 0.0893956670712478 1.18433664580346 3723 0.606976439241151 2 1 1 -6.93409791838773 LTS-012 NA NA NA NA LTS-012 chr19 11687421 12740226 1052806 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.463449835933119 17 0.032872972986044 0.819078471575322 1745 0.850151876625018 2 1 1 -7.29946210869693 LTS-012 chr19 12740227 19756662 7016436 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, ZNF791, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, NA NA NA NA NA NA NA NA NA LTS-012 MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 LYL1, MIR181C, MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 BST2, MIR639, PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 MED26, HOMER3, IL27RA, GDF15, TECR, IER2, ADGRE5) 0.443997183204919 282 0.10149104415471 1.17581894119978 12976 0.602413781408343 3 2 1 -7.14168383603959 LTS-012 NA NA NA NA LTS-012 chr19 19756663 19765568 8906 * ATP13A1 0.475 1 NA 1.24091926216386 59 0.357955284879432 3 3 0 -5.76441025888915 LTS-012 chr19 19765569 19766042 474 * ATP13A1 NA 0 NA 1.17003449522469 4 0.287464780451449 3 NA NA -5.76442132928656 LTS-012 chr19 19766043 24097703 4331661 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.451351633218954 54 0.0433313981183746 1.04953932761519 1558 0.592084066274976 2 1 1 -7.04883824511749 LTS-012 chr19 24097704 24345121 247418 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 1.10252400247528 131 0.523840275329747 3 NA NA -5.77174656122642 LTS-012 chr19 28247625 30021023 1773399 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.492 1 NA 1.08566351042561 51 0.633788881160243 3 3 0 -5.81016867176461 LTS-012 chr19 30021024 34291283 4270260 * c(THEG5, CEBPA, CEBPG, POP4, SLC7A9, WDR88, DPY19L3, ZNF507, VSTM2B, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, CEP89, RHPN2, URI1, CCNE1, PDCD5, FAAP24, TDRD12, NA, ZNF536) 0.412413844107821 72 0.116993057021502 1.12227465036494 1869 0.694475795878812 3 2 1 -6.8984395560901 LTS-012 chr19 34291284 34304353 13070 * KCTD15 NA 0 NA 1.25733809566923 43 0.43239358147679 3 NA NA -5.76441940905434 LTS-012 chr19 34304354 34513658 209305 * KCTD15 NA 0 NA 0.591 1 NA NA NA NA NA LTS-012 chr19 34513659 34583700 70042 * character(0) 0.146 1 NA 0.470799992549031 13 0.117272037456637 1 1 0 -5.84877011526951 LTS-012 chr19 34583701 34991191 407491 * c(UBA2, WTIP, LSM14A, GPI, PDCD2L, KIAA0355) 0.212032387060284 9 0.0737614397907199 0.696671170147514 478 0.3212481112642 1 1 0 -6.88733964809355 LTS-012 chr19 34991192 35033708 42517 * WTIP NA 0 NA 0.354 1 NA NA NA NA NA LTS-012 chr19 35033709 35450251 416543 * c(SCGB2B3P, LINC00904, ZNF792, ZNF599, SCGB2B2, ZNF181, LOC400685, ZNF302, SCGB1B2P, ZNF30) 0.167453224995268 11 0.0436413065382286 0.495006434534325 329 0.212433796274719 1 1 0 -7.01639250210898 LTS-012 chr19 35450252 35843384 393133 * c(HPN-AS1, MIR5196, ZNF792, FAM187B, LGI4, FFAR1, HPN, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, CD22) 0.19917997624563 22 0.0612182950896189 0.717615167705166 861 0.334548482011656 1 1 0 -6.87113343005842 LTS-012 chr19 35843385 35849691 6307 * FFAR3 NA 0 NA 0.179 1 NA NA NA NA NA LTS-012 chr19 35849692 35851315 1624 * FFAR3 NA 0 NA 0.409096842553537 46 0.322878511724353 1 NA NA -5.76529503444592 LTS-012 chr19 35851316 35851352 37 * FFAR3 NA 0 NA 0.281 1 NA NA NA NA NA LTS-012 chr19 35851353 35863705 12353 * FFAR3 NA 0 NA 0.135728844417711 39 0.0819141777936929 0 NA NA -5.99137827150259 LTS-012 chr19 35863706 35863707 2 * character(0) 0.192 1 NA 0.384 1 NA NA NA NA NA LTS-012 chr19 35863708 36643791 780084 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, GAPDHS, ZBTB32, WDR62, FFAR2, APLP1, SBSN, KRTDAP, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, PRODH2, SDHAF1, OVOL3, TYROBP, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ALKBH6, DMKN, KMT2B) 0.175796267803876 34 0.0791761332176638 0.687644289274903 2389 0.350393890351624 1 1 0 -6.9291450429032 LTS-012 chr19 36643792 36673361 29570 * ZNF565 NA 0 NA 0.462 1 NA NA NA NA NA LTS-012 chr19 36673362 37641920 968559 * c(LOC100134317, LINC00665, ZNF420, ZNF565, ZNF567, ZNF585A, ZNF345, ZFP82, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZFP14, ZNF529, LOC644189, LOC728752, ZNF146, ZNF382, ZNF566, ZNF461) 0.208183457350584 36 0.080447454012808 0.553862683211526 1158 0.305560654588774 1 1 0 -6.75278368921201 LTS-012 chr19 37641921 37642319 399 * ZNF585A NA 0 NA 0.177 1 NA NA NA NA NA LTS-012 chr19 37642320 37677748 35429 * c(ZNF585A, ZNF585B) 0.269858542200088 5 0.0657761354900088 0.331341075211686 116 0.123956404049761 1 1 0 -7.79778702137906 LTS-012 chr19 37677749 37678109 361 * ZNF585B NA 0 NA 0.396456319932815 9 0.041924866659829 1 NA NA -5.77851573614789 LTS-012 chr19 37678110 37678115 6 * ZNF585B NA 0 NA 0.595 1 NA NA NA NA NA LTS-012 chr19 37678116 37689998 11883 * ZNF585B 0.192 1 NA 0.661795881835184 17 0.251905707148762 1 1 0 -5.76777828016759 LTS-012 chr19 37689999 38385978 695980 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.16319435314044 9 0.0653299318842443 0.586209553498049 915 0.286969338757724 1 1 0 -6.87403375958219 LTS-012 chr19 38385979 40433225 2047247 * c(LOC100129935, MIR4530, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, FBL, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, NA NA NA NA NA NA NA NA NA LTS-012 LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, WDR87, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.182579136315837 82 0.080507761730692 0.73430417696629 3996 0.423533266311489 1 1 0 -7.22896733329514 LTS-012 NA NA NA NA LTS-012 chr19 40433226 40698245 265020 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) NA 0 NA 0.490002390511735 452 0.254581549256476 1 NA NA -5.80393969822823 LTS-012 chr19 40698246 43023041 2324796 * c(ERICH4, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, ZNF526, C19orf47, LYPD4, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, ERF, AKT2, CYP2G1P, CIC, PLD3, C19orf54, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, B3GNT8, LIPE, MAP3K10, CEACAM6, ATP1A3, PAFAH1B3, RAB4B, POU2F2, NA NA NA NA NA NA NA NA NA LTS-012 ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, BLVRB, ZNF574, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CNFN, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, CD79A) 0.17110777166281 76 0.059544905655091 0.736872570692637 4665 0.385277644439317 1 1 0 -7.4791150333859 LTS-012 NA NA NA NA LTS-012 chr19 43023042 43866541 843500 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P) 0.189038517680173 12 0.0542554982550994 0.521727448281036 287 0.352901840250407 1 1 0 -6.75421880633735 LTS-012 chr19 43866542 44306609 440068 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, KCNN4, PINLYP, PLAUR, SMG9, IRGC, CD177, PHLDB3, XRCC1, ZNF576, TEX101) 0.155703536845357 17 0.0500930017420539 0.757790843644657 826 0.495761978266363 2 2 0 -7.0529283635355 LTS-012 chr19 44306610 44335467 28858 * c(LYPD5, ZNF283) NA 0 NA 0.57 1 NA NA NA NA NA LTS-012 chr19 44335468 45016227 680760 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, ZNF285, ZNF283, ZNF404, ZNF284, ZNF233, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.177417718032687 22 0.0860534038355736 0.515568683530799 1074 0.238590690264476 1 1 0 -6.7959075783515 LTS-012 chr19 45016228 45016921 694 * CEACAM20 NA 0 NA 0.62 1 NA NA NA NA NA LTS-012 chr19 45016922 50357955 5341034 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4531, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, PTH2, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, CPT1C, ALDH16A1, NTN5, CRX, NA NA NA NA NA NA NA NA NA LTS-012 PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IRF3, KCNA7, IGFL1, KCNJ14, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, BCAM, MIR150, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, TRAPPC6A, FKRP, GEMIN7, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 PGLYRP1, EXOC3L2, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.178311443307011 173 0.0628920434361208 0.745251643959547 10533 0.392135610290465 2 2 0 -7.85455389155733 LTS-012 NA NA NA NA LTS-012 chr19 50357956 50358170 215 * PTOV1 0.216344353836 2 0.0148492424049175 1.14755367218553 10 0.396958995923313 10 8 2 -6.74058481892221 LTS-012 chr19 50358171 50358183 13 * PTOV1 0.308 1 NA 0.68 1 NA NA NA NA NA LTS-012 chr19 50358184 50662865 304682 * c(SNAR-B2, SNAR-D, MIR4750, MIR4751, PNKP, SIGLEC11, IZUMO2, ATF5, NUP62, ZNF473, IL4I1, SIGLEC16, LOC400710, VRK3, PTOV1, TBC1D17, AKT1S1) 0.435312662486569 12 0.136587273687314 1.10002255768758 699 0.505179964435768 2 1 1 -6.76333439105762 LTS-012 chr19 50662866 50665871 3006 * IZUMO2 NA 0 NA 1.797 1 NA NA NA NA NA LTS-012 chr19 50665872 51607904 942033 * c(SNAR-F, KLK11, KLK8, FAM71E1, JOSD2, IZUMO2, NAPSB, KLK5, KLK13, EMC10, MGC45922, KLK9, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, KLK14, KLK12, MYBPC2, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, MYH14, SYT3, C19orf48, CTU1, ACPT, LRRC4B, NAPSA, KLK4) 0.426097730411408 38 0.132986338724472 1.32871547968149 1877 0.727683662809442 4 2 2 -6.76542516053993 LTS-012 chr19 51607905 51628192 20288 * c(SIGLEC9, CTU1) NA 0 NA 0.752 1 NA NA NA NA NA LTS-012 chr19 51628193 52887146 1258954 * c(SIGLEC14, LOC100129083, CLDND2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF836, ZNF610, ETFB, FPR1, FPR2, FPR3, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, HAS1, LIM2, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, NKG7, PPP2R1A, ZNF350, ZNF649, MIR643, CEACAM18, LINC01530, ZNF175, ZNF613, ZNF614, ZNF577, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, CD33, SIGLEC6, ZNF432) 0.435258049233275 37 0.0934142667113821 0.979605141104091 2057 0.497250076666841 2 1 1 -6.75802306410018 LTS-012 chr19 52887147 53517424 630278 * c(ZNF816-ZNF321P, ZNF816, ZNF534, ZNF578, ERVV-1, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF468) 0.440095356421116 27 0.0426839241274438 0.815451276779811 689 0.452626163473048 2 1 1 -6.78222104497643 LTS-012 chr19 53517425 53553608 36184 * c(ERVV-2, ERVV-1) 0.426 1 NA 0.449320831715158 53 0.312834380754886 1 1 0 -5.77455443365519 LTS-012 chr19 53553609 53553759 151 * ERVV-2 NA 0 NA 0.663 1 NA NA NA NA NA LTS-012 chr19 53553760 54081842 528083 * c(ERVV-2, BIRC8, ZNF813, TPM3P9, ZNF525, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, ZNF331, ZNF415, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, ZNF845) 0.441991580720816 28 0.0535843793869605 0.845835276476178 882 0.629717629834129 2 1 1 -6.76487050637634 LTS-012 chr19 54081843 54722951 641109 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB3, OSCAR, TMC4, PRPF31, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, NA NA NA NA NA NA NA NA NA LTS-012 MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.4244174780566 22 0.103882342703373 1.14553739677701 1525 0.645902223550253 2 1 1 -6.78919863545497 LTS-012 NA NA NA NA LTS-012 chr19 54722952 55297874 574923 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.401384345614901 55 0.0860959530484048 0.927720282045458 1286 0.622756644335907 2 1 1 -6.80036961339689 LTS-012 chr19 55297875 55340899 43025 * c(KIR2DS4, KIR3DL1) 0.364847619154071 21 0.0873090024267939 0.6732328914154 127 1.07970231660789 3 2 1 -6.74246469021357 LTS-012 chr19 55340900 55351171 10272 * c(KIR2DS4, KIR3DL1) 0.304 1 NA 0.319263572517835 40 0.590078375932884 0 0 0 -5.76714711790508 LTS-012 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.805 1 NA NA NA NA NA LTS-012 chr19 55358616 55525272 166657 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, GP6, NLRP2, NCR1) 0.339658151457084 27 0.125808768191435 1.01866502633248 355 0.656978520342646 3 2 1 -6.7589759783533 LTS-012 chr19 55525273 55525388 116 * GP6 0.494 1 NA 1.25360931602344 5 0.527197970405805 3 3 0 -5.76441016981002 LTS-012 chr19 55525389 55918953 393565 * c(RDH13, COX6B2, TMEM190, PPP6R1, HSPBP1, TMEM86B, UBE2S, TMEM150B, FAM71E2, DNAAF3, IL11, TMEM238, GP6, PPP1R12C, EPS8L1, PTPRH, RPL28, SYT5, TNNI3, TNNT1, BRSK1, KMT5C) 0.454780571909966 35 0.0350751893446497 1.20902968794952 1353 0.58825255628513 4 2 2 -7.06301179307088 LTS-012 chr19 55918954 55942883 23930 * c(UBE2S, SHISA7) NA 0 NA 0.581 1 NA NA NA NA NA LTS-012 chr19 55942884 55944682 1799 * SHISA7 NA 0 NA 0.538266753473525 40 0.217921292542949 1 NA NA -5.76443548842887 LTS-012 chr19 55944683 56235426 290744 * c(SBK3, ZNF865, U2AF2, ZNF524, ZNF784, ZNF579, SSC5D, CCDC106, EPN1, NLRP9, ZNF580, ZNF581, NAT14, SBK2, SHISA7, ISOC2, FIZ1, ZNF628) 0.46903982107754 25 0.0201990098767242 1.34252993776165 792 0.64639991358209 4 2 2 -8.40618246457855 LTS-012 chr19 56235427 58509789 2274363 * c(MIMT1, ZNF667-AS1, PEG3-AS1, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF550, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, NLRP9, RFPL4A, ZSCAN5B, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF444, ZNF416, VN1R1, ZNF304, NA NA NA NA NA NA NA NA NA LTS-012 ZNF471, USP29, ZNF71, ZNF667, AURKC, RFPL4AL1, ZNF814, ZNF17, ZNF134, ZNF154, ZSCAN5A, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, GALP, ZNF551, ZNF835, ZNF264) 0.426569697434958 73 0.108140082288022 0.894103148737105 3693 0.528289603729969 2 1 1 -6.73377549939276 LTS-012 NA NA NA NA LTS-012 chr19 58509790 58509979 190 * ZNF606 NA 0 NA 2.656 1 NA NA NA NA NA LTS-012 chr19 58509980 59082368 572389 * c(A1BG, LOC100128398, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, MZF1, ZNF132, ZNF135, ZNF329, ZNF606, ZBTB45, UBE2M) 0.440296406269917 44 0.082616373173113 1.07338934415739 1352 0.472691353186726 2 1 1 -6.7907425272353 LTS-012 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 0.955653907186116 15 0.244614117880932 2 NA NA -5.76447425860871 LTS-012 chr20 68260 122971 54712 * DEFB125 0.44 1 NA 0.56747782996086 19 0.434519920606074 1 1 0 -5.76447583460468 LTS-012 chr20 122972 241654 118683 * c(DEFB127, DEFB129, DEFB128, DEFB132, DEFB126) 0.443896475339278 9 0.0249271159806166 0.645384229704859 126 0.248320962299723 2 1 1 -7.03259008227414 LTS-012 chr20 241655 251485 9831 * DEFB132 NA 0 NA 2.641 1 NA NA NA NA NA LTS-012 chr20 251486 1559302 1307817 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.43025238785521 48 0.0794701424819365 0.948249465713608 1835 0.490500259288161 2 1 1 -6.74281567902757 LTS-012 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.088 1 NA NA NA NA NA LTS-012 chr20 1569093 1592348 23256 * SIRPB1 NA 0 NA 0.163775354007038 39 0.168967564303847 0 NA NA -5.80092803464358 LTS-012 chr20 1592349 1600390 8042 * SIRPB1 NA 0 NA 0.999 1 NA NA NA NA NA LTS-012 chr20 1600391 21370521 19770131 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, MACROD2, BANF2, SCP2D1, ISM1, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, XRN2, UBOX5, BTBD3, PLCB1, PRND, NA NA NA NA NA NA NA NA NA LTS-012 FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, SNX5, GNRH2, TMEM230, LINC00652, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, MIR103A2, LINC00851, OXT, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, OVOL2, FASTKD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 RRBP1, BFSP1, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SNORA51, SNORD17, SNORD110, TGM3, LINC01433, ZNF133, NDUFAF5, ZNF343, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ATRN, CDS2, MGME1, DTD1, LZTS3, RASSF2, CDC25B, SLC23A2) 0.436281856056687 219 0.0655166475704983 0.943292514879872 10699 0.441260707628056 2 1 1 -6.88435868999364 LTS-012 NA NA NA NA LTS-012 chr20 21370522 21376027 5506 * NKX2-4 NA 0 NA 1.534 1 NA NA NA NA NA LTS-012 chr20 21376028 26188981 4812954 * c(LOC100134868, LINC01432, CST8, CSTL1, CST9L, CST9, LINC00261, NANP, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, LINC00656, CD93, NINL, ABHD12, ZNF337, LOC284788, LOC284798, FAM182A, MIR663AHG, NXT1, VSX1, FOXA2, FLJ33581, NKX2-2, PAX1, APMAP, PYGB, NAPB, GZF1, NKX2-4, SSTR4, THBD, MIR663A, FAM182B, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.417960755821251 64 0.0770138602630659 1.08630632461071 2313 0.574370467455502 2 1 1 -7.0507662488552 LTS-012 chr20 26188982 26189018 37 * MIR663AHG NA 0 NA 1.30364076839525 3 0.0993042463006156 3 NA NA -5.76441583953587 LTS-012 chr20 29625845 29625876 32 * FRG1BP 0.279 1 NA 1.035 1 NA NA NA NA NA LTS-012 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.315703425066412 16 0.0991997773855029 0.826201660322042 51 0.536210630987781 7 5 2 -6.81378444986392 LTS-012 chr20 29652192 29965014 312823 * c(DEFB118, DEFB115, DEFB116, DEFB119, FRG1BP) 0.488 1 NA 0.724502767586527 59 0.388270225451226 2 2 0 -5.82105609845546 LTS-012 chr20 29965015 31678534 1713520 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, TSPY26P, BPIFB6, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf203, REM1, HCK, ID1, XKR7, BPIFB3, PLAGL2, BCL2L1, BPIFB2, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.457675534030606 64 0.0652841146451417 1.04273972249886 2868 0.561992777437753 2 1 1 -6.90979942916353 LTS-012 chr20 31678535 31699461 20927 * BPIFB4 0 1 NA 1.04338380531157 49 1.02727781665187 2 2 0 -5.76467934349292 LTS-012 chr20 31699462 35238152 3538691 * c(TGIF2-C20orf24, MIR499B, MIR4755, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, CEP250, PXMP4, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, ROMO1, C20orf173, CNBD2, BPIFB4, ACTL10, E2F1, AHCY, EPB41L1, DLGAP4, RALY, NCOA6, AAR2, TRPC4AP, GGT7, GSS, BPIFA4P, EIF6, ASIP, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, UQCC1, EDEM2, ACSS2, C20orf24, MIR499A, MYH7B, TP53INP2, TGIF2, NECAB3, NORAD, SNTA1, NA NA NA NA NA NA NA NA NA LTS-012 SPAG4, MIR644A, GDF5, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CPNE1, NFS1, CBFA2T2, BPIFB1, RBM39) 0.396063886779733 55 0.153727917852525 1.05525483538716 4970 0.621393051328591 3 2 1 -6.90236276021355 LTS-012 NA NA NA NA LTS-012 chr20 35238153 35240325 2173 * c(TGIF2-C20orf24, C20orf24) NA 0 NA 0.514 1 NA NA NA NA NA LTS-012 chr20 35240326 36977935 1737610 * c(LOC100287792, TGIF2-C20orf24, LINC00489, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, SAMHD1, GHRH, LBP, NNAT, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, RPN2, MANBAL, BPI, SRC, TGM2, DSN1, SLA2, KIAA1755, TTI1) 0.420731573897242 50 0.0522536982384198 0.876032880288641 2272 0.423132246108025 2 1 1 -6.75604365407178 LTS-012 chr20 36977936 37547966 570031 * c(SNHG11, SLC32A1, ADIG, PPP1R16B, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, SNORA71E, SNORA71C, SNORA71D, ACTR5) 0.388011776033124 18 0.0783925933542861 1.20780598180466 694 0.516256305313482 3 2 1 -6.80465481358375 LTS-012 chr20 37547967 40714540 3166574 * c(PTPRT, ZHX3, PPP1R16B, LOC339568, PLCG1, DHX35, LPIN3, TOP1, FAM83D, CHD6, EMILIN3, MAFB) 0.425527362036862 31 0.118539925672723 0.933713364818845 1677 0.425687471657736 2 1 1 -6.75016227001442 LTS-012 chr20 40714541 42195608 1481068 * c(SGK2, PTPRT, L3MBTL1, SRSF6) 0 1 NA 0.989041671117459 481 0.509818280916328 2 2 0 -5.79636750169513 LTS-012 chr20 42195609 43804789 1609181 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, SGK2, TOMM34, SERINC3, PKIG, FITM2, WFDC12, RIMS4, R3HDML, GTSF1L, WFDC5, HNF4A, KCNS1, MYBL2, IFT52, OSER1, PI3, JPH2, KCNK15, STK4, YWHAB, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, WISP2) 0.334224056836201 9 0.230076617673331 1.03226155248908 1928 0.569111788495451 3 2 1 -6.83864419709683 LTS-012 chr20 43804790 43804797 8 * PI3 0.455 1 NA 1.82 1 NA NA NA NA NA LTS-012 chr20 43804798 49214188 5409391 * c(ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3616, EPPIN-WFDC6, TRERNA1, WFDC2, CEBPB, ARFGEF2, SPINT3, UBE2C, TP53RK, RBPJL, DNTTIP1, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, CSE1L, WFDC13, EYA2, SLC9A8, ZMYND8, WFDC11, WFDC9, SNORD12C, TP53TG5, WFDC10B, LINC00494, LINC01270, KCNB1, TMEM189, TMEM189-UBE2V1, SPINT4, MMP9, ZFAS1, SLC35C2, PIGT, PI3, PLTP, CTSA, DDX27, ZNF334, DBNDD2, NA NA NA NA NA NA NA NA NA LTS-012 RNF114, SULF2, EPPIN, ZNFX1, PTGIS, SLC12A5, PREX1, PTPN1, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLC13A3, SLPI, SNAI1, STAU1, SNORD12, MIR645, TNNC2, UBE2V1, SYS1-DBNDD2, MKRN7P, SLC2A10, NCOA3, MATN4, SYS1, WFDC8, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.446203956838278 90 0.0786786230042995 1.01580297207884 5887 0.51853819382953 2 1 1 -6.93687947012978 LTS-012 NA NA NA NA LTS-012 chr20 49214189 49506935 292747 * c(FAM65C, ADNP, BCAS4, PARD6B) 0.365619412933858 6 0.0435828712531273 1.49238358142807 265 0.939343609356004 3 2 1 -6.74688632554512 LTS-012 chr20 49506936 49506941 6 * ADNP NA 0 NA 0.86 1 NA NA NA NA NA LTS-012 chr20 49506942 57599551 8092610 * c(MIR298, MIR4325, MIR3194, MTRNR2L3, MIR4756, MIR4532, MIR5095, ATP9A, FAM210B, TSHZ2, C20orf85, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, FAM209A, ADNP, SPO11, MOCS3, GNAS, KCNG1, FAM209B, SUMO1P1, MIR296, MC3R, NFATC2, PCK1, NELFCD, RTFDC1, PFDN4, PPP4R1L, RBM38, ZFP64, DOK5, PMEPA1, CASS4, SALL4, RAB22A, BMP7, AURKA, TFAP2C, ZNF217, NPEPL1, TUBB1, ZBP1, RAE1, NA NA NA NA NA NA NA NA NA LTS-012 BCAS1, STX16, DPM1, VAPB) 0.436910556831298 105 0.0506557240689774 1.05899700134744 4281 0.535711291690554 2 1 1 -7.17346803607566 LTS-012 NA NA NA NA LTS-012 chr20 57599552 57599557 6 * TUBB1 NA 0 NA 0.642 1 NA NA NA NA NA LTS-012 chr20 57599558 58647131 1047574 * c(LOC100506384, SLMO2-ATP5E, SYCP2, PHACTR3, ZNF831, EDN3, C20orf197, PRELID3B, ATP5E, PPP1R3D, CDH26, FAM217B, TUBB1) 0.420833495388503 8 0.0546009876938399 0.916427345315373 1116 0.500177374388817 2 1 1 -6.75163198199254 LTS-012 chr20 58647132 59197355 550224 * c(MIR4533, C20orf197, MIR646HG) NA 0 NA 0.898701325561976 43 0.200554629636013 2 NA NA -5.76442103876123 LTS-012 chr20 59197356 59224964 27609 * MIR646HG NA 0 NA 1.428 1 NA NA NA NA NA LTS-012 chr20 59224965 59827664 602700 * c(CDH4, MIR646HG) 0.358 1 NA 1.32267020389769 19 0.74501769279199 3 3 0 -5.76720619373168 LTS-012 chr20 59827665 62174724 2347060 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1257, MIR4326, MIR3196, MIR4758, LINC00659, OGFR-AS1, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, LSM14B, EEF1A2, C20orf166-AS1, SS18L1, MTG2, SLCO4A1, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, MRGBP, ARFGAP1, PSMA7, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, HAR1A, NA NA NA NA NA NA NA NA NA LTS-012 HAR1B, PPDPF, BIRC7, CABLES2, OSBPL2) 0.399898283802113 76 0.157478296471765 1.14106189850967 3651 0.73807486131636 3 2 1 -6.78696164635912 LTS-012 NA NA NA NA LTS-012 chr20 62174725 62190265 15541 * c(SRMS, FNDC11, HELZ2) 0.444 1 NA 1.35337940548201 61 1.42497347842255 3 3 0 -5.76444608145916 LTS-012 chr20 62190266 62896765 706500 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, PCMTD2, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.446238262657578 68 0.0695641832599586 1.12902437461438 2170 0.486071503146567 2 1 1 -6.85772609298629 LTS-012 chr20 62896766 62959313 62548 * c(LINC00266-1, PCMTD2) NA 0 NA 1.01714995358157 81 0.35101160158098 2 NA NA -5.76916266129677 LTS-012 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.233 1 NA 0.302343455352627 29 0.703400275999279 0 0 0 -5.77573023529827 LTS-012 chr21 9907203 11098723 1191521 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.300183181591991 40 0.112273464225661 0.821955791018494 179 1.1133008720802 4 3 1 -6.98202805181879 LTS-012 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 1.2228196601125 3 0.0115470053837925 3 NA NA -5.76444342663822 LTS-012 chr21 14745307 15481234 735928 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, NA) 0.128 1 NA 0.426600496435962 85 0.296806776312445 1 1 0 -6.09941264019183 LTS-012 chr21 15481235 16340721 859487 * c(SAMSN1-AS1, LIPI, ABCC13, LOC388813, RBM11, SAMSN1, HSPA13, NRIP1) 0.202434372000164 14 0.0492332416961557 0.42318276966761 512 0.216656922606925 1 1 0 -7.48069439179592 LTS-012 chr21 16340722 31538270 15197549 * c(GRIK1-AS2, LINC01549, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, CLDN17, D21S2088E, LINC00515, GRIK1, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, NA NA NA NA NA NA NA NA NA LTS-012 GRIK1-AS1, NRIP1, ADAMTS1) 0.171607723849327 74 0.069951912662583 0.565570815436255 2862 0.318965324108913 1 1 0 -6.8149108259367 LTS-012 NA NA NA NA LTS-012 chr21 31538271 32491064 952794 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.18061860215441 14 0.0543315523652471 0.40967886383116 565 0.183747048994492 1 1 0 -8.04263778568274 LTS-012 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 0.992 1 NA NA NA NA NA LTS-012 chr21 32491171 33974078 1482908 * c(LINC00159, TCP10L, HUNK, MIS18A, MRAP, C21orf59, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, URB1-AS1, URB1) 0.181492585423517 34 0.0601287166572256 0.732182436469692 1078 0.392420422244279 1 1 0 -7.16320802338188 LTS-012 chr21 33974079 43342238 9368160 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, LINC00310, B3GALT5-AS1, OLIG1, LCA5L, IGSF5, LINC00479, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, NA NA NA NA NA NA NA NA NA LTS-012 MX1, MX2, PCP4, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, C21orf59, PRDM15, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SON, TMPRSS2, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.182668972530105 136 0.0676464887491372 0.6331834290494 7673 0.732129082494179 1 1 0 -6.9183170024463 LTS-012 NA NA NA NA LTS-012 chr21 43342239 43373462 31224 * C2CD2 NA 0 NA 0.385 1 NA NA NA NA NA LTS-012 chr21 43373463 43548239 174777 * c(UMODL1-AS1, C2CD2, ZBTB21, UMODL1) 0.206432078436876 17 0.0676480402742103 0.471832044700403 361 0.238025233220636 1 1 0 -6.80454199057056 LTS-012 chr21 43548240 43621839 73600 * c(UMODL1, ABCG1) NA 0 NA 0.506724008503965 18 0.12124010639509 1 NA NA -5.7907244239588 LTS-012 chr21 43621840 43676586 54747 * ABCG1 0.485 1 NA 0.789625643281703 33 0.33667362072776 2 2 0 -5.76917205537115 LTS-012 chr21 43676587 47531363 3854777 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, COL18A1-AS2, ADARB1, WDR4, HSF2BP, LINC00313, TSPEAR-AS2, COL6A1, COL6A2, CRYAA, CSTB, SIK1, RRP1B, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, NDUFV3, PDE9A, PFKL, PKNOX1, NA NA NA NA NA NA NA NA NA LTS-012 UBASH3A, SLC37A1, PCBP3, TSPEAR, AGPAT3, PWP2, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, LINC01547, FAM207A, PDXK, RRP1, CBS, RSPH1, ABCG1) 0.434161085083541 206 0.0775953823226776 0.917017483458205 5395 0.50357385230999 2 1 1 -6.73875528428488 LTS-012 NA NA NA NA LTS-012 chr21 47531364 47531462 99 * COL6A2 NA 0 NA 1.015 1 NA NA NA NA NA LTS-012 chr21 47531463 47988425 456963 * c(DIP2A-IT1, FTCD, MCM3AP-AS1, COL6A2, DIP2A, LSS, PCNT, C21orf58, YBEY, SPATC1L, MCM3AP) 0.435991578769011 23 0.0980724705825545 1.09990063401051 1353 0.530286332184458 2 1 1 -6.77511814774004 LTS-012 chr21 47988426 48084993 96568 * c(DIP2A, PRMT2, S100B) NA 0 NA 0.910421281176241 157 0.531005373186651 2 NA NA -5.76445104095254 LTS-012 chr22 16157787 16157883 97 * character(0) 0.476 1 NA 4.912 1 NA NA NA NA NA LTS-012 chr22 16157884 17289017 1131134 * c(CCT8L2, XKR3, ANKRD62P1-PARP4P3, POTEH, TPTEP1, OR11H1) 0.339269595381327 7 0.162624165017438 0.675779934561242 217 0.696129571741996 2 1 1 -7.02573525416336 LTS-012 chr22 17289018 17325310 36293 * c(XKR3, HSFY1P1) NA 0 NA 1.204 1 NA NA NA NA NA LTS-012 chr22 17325311 18256809 931499 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, IL17RA, BCL2L13, CECR6, CECR5, CECR3, CECR2, CECR1, ATP6V1E1, BID, SLC25A18) 0.425705357506935 34 0.101943572522301 1.03655669773145 1122 0.598311841856708 2 1 1 -6.76632461633241 LTS-012 chr22 18256810 18257141 332 * BID NA 0 NA 1.56 1 NA NA NA NA NA LTS-012 chr22 18257142 20229339 1972198 * c(FLJ41941, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, TUBA8, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, DGCR2) 0.434669461784403 88 0.0797946685731971 1.2560149852022 3220 0.591944619700923 4 2 2 -6.9075985979235 LTS-012 chr22 20229340 20302405 73066 * c(MIR1286, RTN4R, DGCR6L) 0 1 NA 1.1007463672953 99 0.453535037796611 3 3 0 -5.76738318437488 LTS-012 chr22 20302406 20862022 559617 * c(MED15, TMEM191B, PI4KAP1, NA, ZNF74, KLHL22, DGCR6L, RIMBP3, SCARF2) 0.349735907791563 6 0.165893238761158 1.19670751799401 390 0.537565539711394 3 2 1 -6.73714382132819 LTS-012 chr22 20862023 22065251 1203229 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, TMEM191C, SLC7A4, UBE2L3, THAP7, LZTR1, TMEM191A, P2RX6, SNAP29) 0.357092379591766 64 0.0953302530304894 1.43145680472211 1860 0.797147070599633 3 2 1 -6.75764897406304 LTS-012 chr22 22065252 22221704 156453 * c(YPEL1, MAPK1) NA 0 NA 1.23722882366315 43 0.27023782643256 3 NA NA -5.76441215049 LTS-012 chr22 22221705 22239784 18080 * MAPK1 NA 0 NA 0.756 1 NA NA NA NA NA LTS-012 chr22 22239785 22312914 73130 * c(TOP3B, PPM1F) 0.159 1 NA 0.636067992787742 199 0.299215325178684 1 1 0 -5.77313752587491 LTS-012 chr22 22312915 22569469 256555 * TOP3B 0.156794573467488 5 0.0337905312180794 0.633336650882965 163 0.329173483142385 1 1 0 -7.39593829733919 LTS-012 chr22 22569470 22569516 47 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-012 chr22 22569517 22578547 9031 * character(0) NA 0 NA 0.254627812329027 38 0.306457222399375 0 NA NA -5.76602094883691 LTS-012 chr22 22578548 22578570 23 * character(0) NA 0 NA 1.123 1 NA NA NA NA NA LTS-012 chr22 22578571 24227179 1648609 * c(IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, C22orf15, PRAME, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, VPREB3, IGLL1, CHCHD10, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, VPREB1, ZNF70, GGTLC2, GUSBP11, DERL3, RAB36, BMS1P20) 0.199865500500675 42 0.0628424277992768 0.581417973800052 1813 0.285524510673445 1 1 0 -6.76204622320366 LTS-012 chr22 24227180 24238374 11195 * c(MIF-AS1, MIF, SLC2A11) NA 0 NA 1.04979579264035 61 0.461983480886516 2 NA NA -5.76518130360661 LTS-012 chr22 24238375 24284766 46392 * MIF-AS1 NA 0 NA 0.1 1 NA NA NA NA NA LTS-012 chr22 24284767 24340955 56189 * c(DDTL, DDT, GSTTP1) 0.114 1 NA 0.369777992441417 44 0.219698326464183 1 1 0 -5.87895410458878 LTS-012 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.239 1 NA NA NA NA NA LTS-012 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) 0.154 1 NA 1.32405746673376 58 0.596101292108749 3 3 0 -5.76472425419307 LTS-012 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.707 1 NA NA NA NA NA LTS-012 chr22 24400149 36585989 12185841 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, SEC14L2, NA NA NA NA NA NA NA NA NA LTS-012 RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, PISD, OSBP2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MB, MCM5, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, BCRP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TIMP3, TOP1P2, SEC14L6, XBP1, YWHAH, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.162584029744806 205 0.0785871191361386 0.624758562034795 11133 0.345421854220831 1 1 0 -7.5492311169356 LTS-012 NA NA NA NA LTS-012 chr22 36585990 36622945 36956 * c(APOL2, APOL4) 0.198493053143095 11 0.0408418234834654 0.372501251296545 76 0.175500379366811 1 1 0 -6.85544303768187 LTS-012 chr22 36622946 36622955 10 * APOL2 NA 0 NA 0.702 1 NA NA NA NA NA LTS-012 chr22 36622956 51135545 14512590 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, CPT1B, APOBEC3D, CSF2RB, CSNK1E, NA NA NA NA NA NA NA NA NA LTS-012 ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, GCAT, CBX6, NPTXR, CBX7, SLC16A8, MAPK8IP2, SH3BP1, PLXNB2, MAFF, BRD1, ARHGAP8, APOL2, SERHL2, XRCC6, TBC1D22A, CBY1, SUN2, TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 SULT4A1, GGA1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, CARD10, PARVB, NCAPH2, H1F0, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, CHKB-CPT1B, OGFRP1, LINC00207, LGALS1, LGALS2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, MFNG, MGAT3, MPST, SHISA8, ODF3B, MYH9, NAGA, ATF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 NCF4, NDUFA6, SNU13, ACO2, EIF3L, GTSE1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SOX10, SREBF2, SSTR3, ST13, TCF20, TEF, TSPO, MIR658, MIR659, TST, LOC730668, UPK3A, WNT7B, MPPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, FOXRED2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, PLA2G6, LDOC1L, POLDIP3, C22orf23, GALR3, PHF5A, KIAA1644, SHANK3, MICALL1, TUBGCP6, APOL1, EIF3D, CACNA1I, NA, LMF2, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, CELSR1, PPP6R2, ZBED4, JOSD1, RBX1, SCO2) 0.180517212513877 444 0.0613003696744945 0.670061409891172 19478 0.387085782515621 1 1 0 -8.29399900838193 LTS-012 NA NA NA NA LTS-012 chr22 51135546 51183804 48259 * c(ACR, SHANK3) NA 0 NA 0.707054984358366 159 0.288761139940633 2 NA NA -5.78412901995786 LTS-012 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.341 1 NA NA NA NA NA LTS-012 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.433452391883199 71 0.18172495523768 1 NA NA -5.78129755710304 LTS-012 chrX 2699993 2700027 35 * XG 0.087 1 NA 1.487 1 NA NA NA NA NA LTS-012 chrX 2700028 12516836 9816809 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.1369531415972 37 0.047464812318268 0.783967244961389 2850 0.487805178731058 2 2 0 -7.23077946596338 LTS-012 chrX 12516837 12941067 424231 * c(TLR8-AS1, TLR7, TLR8, PRPS2, FRMPD4) 0.142685853935512 11 0.0424013293102083 0.555718510648509 495 0.27355261846921 1 1 0 -7.49360949156534 LTS-012 chrX 12941068 13058977 117910 * c(FAM9C, TLR8-AS1, TLR8, TMSB4X) NA 0 NA 0.600113019186573 107 0.251955525180572 1 NA NA -5.77073169969641 LTS-012 chrX 13058978 13060950 1973 * FAM9C NA 0 NA 0.792 1 NA NA NA NA NA LTS-012 chrX 13060951 13337115 276165 * c(GS1-600G8.3, FAM9C, ATXN3L) 0.3 1 NA 0.841991398954735 21 0.38618121825554 2 2 0 -5.76896159740148 LTS-012 chrX 13337116 15848463 2511348 * c(GS1-600G8.3, LINC01203, PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, CA5BP1, PIGA, GEMIN8, TMEM27, ACE2, TRAPPC2, BMX, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A) 0.296995819161989 22 0.115424531668197 0.904732095126743 1764 0.414444599386339 2 1 1 -7.44181407802086 LTS-012 chrX 15848464 15851093 2630 * AP1S2 0.283777249575018 2 0.0629325035256027 0.406804140032191 64 0.135298200928923 4 3 1 -6.88761932554056 LTS-012 chrX 15851094 20143142 4292049 * c(PHKA2-AS1, MIR23C, MIR4768, ADGRG2, SCML2, RAI2, BEND2, EIF1AX, CXorf23, MAP7D2, GRPR, SH3KBP1, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RS1, SCML1, MAGEB17, CDKL5, LOC729609, S100G, AP1S2, REPS2, SYAP1) 0.261602601472487 15 0.159882844012495 0.998010576938028 2753 0.519174477400153 2 2 0 -7.27522333714914 LTS-012 chrX 20143143 20146530 3388 * EIF1AX NA 0 NA 0.541596153667864 73 0.183359340206032 1 NA NA -5.76445499122245 LTS-012 chrX 20146531 20148691 2161 * EIF1AX NA 0 NA 1.186 1 NA NA NA NA NA LTS-012 chrX 20148692 25022319 4873628 * c(SUPT20HL1, SCARNA9L, PTCHD1-AS, ZFX-AS1, PHEX-AS1, PRDX4, PTCHD1, ZNF645, DDX53, SUPT20HL2, ARX, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, KLHL34, YY2, MBTPS2, PDK3, PHEX, POLA1, RPS6KA3, SAT1, SMS, SCARNA23, ZFX, APOO, KLHL15, PCYT1B) 0.350643885821484 28 0.0674539231329931 0.922279868009503 2707 0.480658367170952 2 1 1 -7.47830517611791 LTS-012 chrX 25022320 25022446 127 * ARX NA 0 NA 2.851 1 NA NA NA NA NA LTS-012 chrX 25022447 25034152 11706 * ARX NA 0 NA 1.80980432369814 61 0.819853876757909 5 NA NA -5.76444728612603 LTS-012 chrX 26156999 37285173 11128175 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, FAM47A, MAGEB6, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, CXorf21, TMEM47) 0.36966468588506 28 0.105632812162183 0.704736744096089 2051 0.353098427162801 2 1 1 -9.07023574233477 LTS-012 chrX 37285174 47002190 9717017 * c(LOC100132831, ATP6AP2, FUNDC1, CYBB, CXorf38, DDX3X, HYPM, GPR82, GPR34, LINC01281, LANCL3, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, OTC, NDUFB11, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NYX, RP2, RPGR, DUSP21, ZNF674, DYNLT3, TSPAN7, LINC01545, KDM6A, XK, CXorf36, EFHC2, PPP1R2P9, USP9X, SRPX, SLC9A7, CASK, RGN, MED14, SYTL5, JADE3) 0.382539895845006 25 0.102703164508208 0.824029543524512 3885 0.395266886644683 2 1 1 -7.12105925504056 LTS-012 chrX 47002191 47003892 1702 * NDUFB11 NA 0 NA 1.542 1 NA NA NA NA NA LTS-012 chrX 47003893 47107767 103875 * c(CDK16, NDUFB11, UBA1, USP11, RBM10, INE1) 0.437030909884105 2 0.0431335136523794 1.26810905675516 577 0.57191456112853 4 2 2 -6.75732468278996 LTS-012 chrX 47107768 47229930 122163 * character(0) NA 0 NA 0.513 1 NA NA NA NA NA LTS-012 chrX 47229931 48435981 1206051 * c(SNORA11C, UXT-AS1, MIR4769, SSX3, EBP, ELK1, FTSJ1, SSX6, SSX9, ZNF81, ARAF, SPACA5, CXXC1P1, TBC1D25, CFP, ZNF630, RBM3, PORCN, SSX1, SSX5, SYN1, TIMP1, ZNF182, ZNF41, ZNF157, UXT, SLC38A5) 0.310284945657437 13 0.14318179228179 0.845769888717935 1531 0.542635829888904 2 1 1 -7.13543191725726 LTS-012 chrX 48435982 54842447 6406466 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, HUWE1, PQBP1, TIMM17B, MAGED2, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, RIBC1, XAGE3, XAGE5, NUDT10, FGD1, IQSEC2, PHF8, GSPT2, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX7, SSX8, CCDC22, HSD17B10, ERAS, ITIH6, KCND1, USP27X, GLOD5, PRICKLE3, MIRLET7F2, MIR188, MIR98, SPANXN5, FOXP3, PLP2, GPR173, GNL3L, FAM120C, NUDT11, OTUD5, GRIPAP1, NA NA NA NA NA NA NA NA NA LTS-012 MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, WNK3, XAGE1B, SNORA11, SUV39H1, SYP, MIR532, TFE3, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, CACNA1F, MAGIX, MAGED4B, KDM5C, SMC1A, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, BMP15, MAGED1, PAGE4) 0.406465647840458 28 0.0935896989311951 0.982495381922457 6095 0.477207496420077 2 1 1 -6.90586963721077 LTS-012 NA NA NA NA LTS-012 chrX 54842448 54948589 106142 * TRO NA 0 NA 0.604 1 NA NA NA NA NA LTS-012 chrX 54948590 57622718 2674129 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, PAGE2B, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, LINC01420, TRO, FAM104B, PAGE5) 0.273580251969328 9 0.128009765252499 0.823171496752522 1148 0.391933984691055 2 2 0 -7.56881421586403 LTS-012 chrX 57622719 57937169 314451 * c(ZXDB, ZXDA) NA 0 NA 0.79402062084999 125 0.356552624718355 2 NA NA -5.78666642528186 LTS-012 chrX 61999880 65253590 3253711 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278) 0 1 NA 0.933734305759451 1055 0.560237410552233 2 2 0 -5.77404717541552 LTS-012 chrX 65253591 70367359 5113769 * c(MIR676, VSIG4, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, FAM155B, YIPF6, SNX12, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ARR3, FOXO4, OPHN1, P2RY4, PDZD11, NLGN3, GDPD2, TEX11, EDA2R, PJA1, SLC7A3, STARD8, HEPH, MED12) 0.374567800393739 29 0.188005109457871 0.993631895211513 2887 0.47639194368035 2 1 1 -6.92139940328999 LTS-012 chrX 70367360 70445407 78048 * c(GJB1, NLGN3, BCYRN1) 0.439 1 NA 1.0938766866814 137 0.490224198518621 3 3 0 -5.76742403741613 LTS-012 chrX 70445408 71934101 1488694 * c(ITGB1BP2, INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, CITED1, NONO, PHKA1, PIN4, ERCC6L, HDAC8, BCYRN1, RPS4X, TAF1, OGT, ZMYM3, ACRC) 0.424 1 NA 0.926727256295062 1696 0.526517881246937 2 2 0 -5.76767914843699 LTS-012 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.12 1 NA NA NA NA NA LTS-012 chrX 72066651 72224960 158310 * c(PABPC1L2B, FAM226B) NA 0 NA 0.387937831657868 50 0.379579017075604 1 NA NA -5.84907919624957 LTS-012 chrX 72224961 73069810 844850 * c(CDX4, MAP2K4P1, PABPC1L2A, NAP1L2, CHIC1, PABPC1L2B, NAP1L6, XIST, TSIX) 0.388713209810335 8 0.08323364275168 0.792532114999753 678 0.388629615738485 2 1 1 -6.92999832549418 LTS-012 chrX 73069811 77528012 4458202 * c(MIR374B, FTX, MIR374C, COX7B, UPRT, MAGEE2, ZDHHC15, ABCB7, TTC3P1, KIAA2022, ZCCHC13, PGAM4, MIR374A, MIR384, RLIM, PBDC1, TAF9B, PGK1, ATP7A, ATRX, JPX, MAGEE1, SLC16A2, MIR545, MIR421, XIST, MAGT1, FGF16) 0.424147324546638 4 0.0389133653132185 0.930999132271461 2026 0.507833504081404 2 1 1 -6.76116900237277 LTS-012 chrX 77528013 91066332 13538320 * c(UBE2DNL, MIR4328, CYSLTR1, CHM, DACH2, APOOL, HDX, PABPC5, CYLC1, FAM46D, ZCCHC5, BRWD3, PCDH11X, RPS6KA6, P2RY10, LPAR4, SATL1, TBX22, CPXCR1, POU3F4, KLHL4, SH3BGRL, ZNF711, HMGN5, POF1B, GPR174, TGIF2LX, ITM2A) 0.437842583981591 26 0.0519482582813085 0.761063118215933 2191 0.377326911733801 2 1 1 -7.99877668402776 LTS-012 chrX 91066333 91138366 72034 * PCDH11X NA 0 NA 0.382105088236511 136 0.158907251555585 1 NA NA -5.99720107565106 LTS-012 chrX 91138367 91873881 735515 * PCDH11X 0.443618458951272 2 0.0183847763108503 1.03986227385039 62 0.807022958815298 2 1 1 -7.05225227499521 LTS-012 chrX 91873882 91878165 4284 * PCDH11X 0.419463375120931 5 0.0597645379803107 0.442143011879472 121 0.506032308363249 2 1 1 -6.75728641447802 LTS-012 chrX 91878166 100626758 8748593 * c(CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, SRPX2, PCDH11X, FAM133A, RPA4, ARL13A, XKRX, XRCC6P5, NAP1L3, TAF7L, PCDH19, TMEM35A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, SYTL4) 0.431280760646884 20 0.107751126505285 0.928514192631213 1932 0.403621646799454 2 1 1 -6.76965226155793 LTS-012 chrX 100626759 101609367 982609 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, GLA, HNRNPH2, BEX5, ARMCX1, ARMCX3, ARMCX6, NXF5, RPL36A, BTK, ZMAT1, ARMCX2) 0.433350244518178 15 0.0344811887984214 0.794754910192554 736 0.424878017045081 2 1 1 -6.786134840273 LTS-012 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.099 1 NA NA NA NA NA LTS-012 chrX 101615285 101625090 9806 * character(0) NA 0 NA 0.367219109806993 45 0.537282337417684 1 NA NA -5.76793153478385 LTS-012 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.985 1 NA NA NA NA NA LTS-012 chrX 101768565 102006182 237618 * c(ARMCX5-GPRASP2, TMSB15A, GPRASP2, NXF4, ARMCX5, BHLHB9, GPRASP1) NA 0 NA 0.691229386778636 308 0.255228053368509 1 NA NA -5.86547302459993 LTS-012 chrX 102006183 102006226 44 * BHLHB9 0.5 1 NA 1.517 1 NA NA NA NA NA LTS-012 chrX 102006227 102884925 878699 * c(LINC00630, RAB40A, BEX3, RAB40AL, TCEAL5, TCEAL9, BEX1, NXF3, BEX4, TCEAL7, TCEAL4, BHLHB9, BEX2, TCEAL3, TCEAL8, TCEAL1) 0 1 NA 1.07035081419439 505 0.632861978063407 3 3 0 -5.79239243961366 LTS-012 chrX 102884926 113865472 10980547 * c(TRPC5OS, MIR4329, MIR3978, MID2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, AMOT, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, SLC25A53, LINC00890, GLRA4, PAK3, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, NXT2, TEX13B, TEX13A, PRPS1, PSMD10, RGAG1, ZCCHC18, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, NA NA NA NA NA NA NA NA NA LTS-012 RNF128, MORC4, ALG13, ESX1, CAPN6, TMEM164, IRS4, CLDN2, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, AMMECR1) 0.415018571414886 40 0.081309439796373 0.853693682650955 5346 0.373523910571262 2 1 1 -6.87063481315444 LTS-012 NA NA NA NA LTS-012 chrX 113865473 113885954 20482 * c(MIR764, HTR2C) NA 0 NA 0.669 1 NA NA NA NA NA LTS-012 chrX 113885955 117107363 3221409 * c(MIR1912, MIR1298, MIR1911, MIR1264, SLC6A14, RBMXL3, AGTR2, CT83, HTR2C, IL13RA2, LUZP4, PLS3, MIR448, LRCH2, KLHL13) 0.403607656825996 22 0.0964521728372235 0.70547325662362 888 0.320755685365565 2 1 1 -7.70839271252014 LTS-012 chrX 117107364 117107366 3 * KLHL13 NA 0 NA 0.957 1 NA NA NA NA NA LTS-012 chrX 117107367 138679712 21572346 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, NA NA NA NA NA NA NA NA NA LTS-012 GLUD2, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, IGSF1, IL13RA1, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, NA NA NA NA NA NA NA NA NA NA NA NA LTS-012 KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.408054074929587 91 0.115120041398637 0.885000235812293 9304 0.454787069579047 2 1 1 -6.76772137361863 LTS-012 NA NA NA NA LTS-012 chrX 138679713 138809099 129387 * c(ATP11C, MCF2) 0.34 1 NA 0.944353828314838 127 0.467534282392049 2 2 0 -5.76532300483504 LTS-012 chrX 138809100 148628393 9819294 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, NA, FMR1, AFF2, LDOC1, ATP11C, LINC00632, IDS, CXorf66, LOC389895, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SLITRK2, TMEM257, CXorf40A, MAGEC1) 0.399743927616357 28 0.120901048349729 0.964500049811603 2034 0.478516916290995 2 1 1 -6.90065040119716 LTS-012 chrX 148628394 148664742 36349 * CXorf40A NA 0 NA 0.317595703566154 50 0.203393926624556 0 NA NA -5.84278058234092 LTS-012 chrX 148664743 149097285 432543 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.385 1 NA 0.865536464992923 156 0.533747084146203 2 2 0 -5.76562012911991 LTS-012 chrX 149097286 149097427 142 * character(0) NA 0 NA 0.17 1 NA NA NA NA NA LTS-012 chrX 149097428 149100878 3451 * CXorf40B NA 0 NA 0.362168916018016 42 0.212586375148914 1 NA NA -5.77285360701585 LTS-012 chrX 149100879 151825944 2725066 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.37084863831273 16 0.117807116366825 1.07194827161968 1566 0.663717304638059 3 2 1 -6.81395651085201 LTS-012 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.153 1 NA NA NA NA NA LTS-012 chrX 151869400 151995816 126417 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) NA 0 NA 0.635729218165217 128 0.413416207507545 1 NA NA -5.77225131908329 LTS-012 chrX 151995817 154051788 2055972 * c(SMIM9, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, SNORA36A, SNORA56, TAZ, ZNF185, NA NA NA NA NA NA NA NA NA LTS-012 NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.391822709209941 88 0.0802082060754327 1.1749823475124 4746 0.743427496052765 3 2 1 -6.82701513220841 LTS-012 NA NA NA NA LTS-012 chrX 154051789 154507173 455385 * c(SMIM9, CMC4, RAB39B, CLIC2, F8, MTCP1, FUNDC2, VBP1, BRCC3) 0.411336790260509 5 0.0772948898699002 0.891419525579363 675 0.309538158557992 2 1 1 -6.76861434295883 LTS-012 chrX 154507174 154563911 56738 * CLIC2 NA 0 NA 0.785540783915022 38 0.284555670453924 2 NA NA -5.77188530885783 LTS-012 chrX 154563912 154580211 16300 * CLIC2 NA 0 NA 0.318149221549343 40 0.382812453244372 0 NA NA -5.77453471519079 LTS-012 chrX 154580212 154774986 194775 * TMLHE NA 0 NA 1.16059172911678 39 2.21639987506944 3 NA NA -5.76451125196653 LTS-012 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.427799313271752 27 0.249390025091992 1 NA NA -6.1897995988625 LTS-012 chrY 13309514 13310578 1065 * character(0) 0.029 1 NA 0.416205697159766 9 0.411315099541837 1 1 0 -5.76472874517933 LTS-012 chrY 13310579 13310602 24 * character(0) 0.075 1 NA 0.559906984289467 3 0.157039273219578 1 1 0 -5.76441015485236 LTS-012 chr1 14653 1608309 1593657 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, SLC35E2B, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, NA NA NA NA NA NA NA NA NA LTS-013 PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.386295699572838 46 0.109909785140201 0.828083052108556 3018 0.21602832009239 3 2 1 -6.87334355830938 LTS-013 NA NA NA NA LTS-013 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.099 1 NA NA NA NA NA LTS-013 chr1 1630372 1638995 8624 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 0.485208170194002 68 0.298652259092882 1 NA NA -5.76446871849581 LTS-013 chr1 1638996 1646772 7777 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.225530181432322 43 0.183327781049519 0 NA NA -5.77601466123969 LTS-013 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.756 1 NA NA NA NA NA LTS-013 chr1 1647807 1656866 9060 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.416536249300646 11 0.0407810116241727 0.488168930967281 57 0.239255647869792 2 1 1 -6.74818027538683 LTS-013 chr1 1656867 8716485 7059619 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, UTS2, RER1, PARK7, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, TNFRSF9, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, RERE, WRAP73, SLC45A1, PEX10, ERRFI1, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, NA NA NA NA NA NA NA NA NA LTS-013 PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, THAP3, VAMP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.426511063426698 142 0.100036547362007 0.836704525721263 6243 0.250374286577666 3 2 1 -7.18961278606105 LTS-013 NA NA NA NA LTS-013 chr1 8716486 8921061 204576 * c(ENO1, RERE) NA 0 NA 1.13 1 NA NA NA NA NA LTS-013 chr1 8921062 8928125 7064 * ENO1 0.399 1 NA 1.03603242733236 53 0.204338273209899 4 4 0 -5.76477248371234 LTS-013 chr1 8928126 9009444 81319 * c(ENO1-AS1, ENO1, CA6) 0.281 1 NA 1.09243672495234 31 0.464135139756719 4 4 0 -5.76442042422773 LTS-013 chr1 9009445 16360200 7350756 * c(NPPA-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, CTRC, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, CORT, C1orf127, C1orf64, SLC2A7, DFFA, TMEM201, TMEM51-AS1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, DNAJC16, TARDBP, MTOR, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, DRAXIN, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, NA NA NA NA NA NA NA NA NA LTS-013 PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, NPPA, NPPB, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, FBLIM1, CASZ1, TMEM51, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, KIAA2013, DHRS3, C1orf158, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 FBXO44, TNFRSF8, H6PD, MFN2) 0.344654763088999 226 0.070974360598319 1.0811372129026 8445 0.317411428716903 4 3 1 -6.82986843130795 LTS-013 NA NA NA NA LTS-013 chr1 16360201 16360208 8 * c(CLCNKA, CLCNKB) NA 0 NA 1.147 1 NA NA NA NA NA LTS-013 chr1 16360209 16362719 2511 * c(CLCNKA, CLCNKB) 0.296257258296636 3 0.0749688824335359 0.595510143321186 39 0.421362126721609 1 1 0 -6.73519918550604 LTS-013 chr1 16362720 16362743 24 * CLCNKB NA 0 NA 1.3 1 NA NA NA NA NA LTS-013 chr1 16362744 16803055 440312 * c(CROCCP3, CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.343042161165463 33 0.0894371711077535 1.09291530085233 841 0.263521417499394 4 3 1 -6.78018805424293 LTS-013 chr1 16803056 16803330 275 * CROCCP3 NA 0 NA 0.876 1 NA NA NA NA NA LTS-013 chr1 16803331 16978916 175586 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.381352172994189 17 0.0994433773265854 0.731709749877989 143 0.231174631252946 3 2 1 -6.81653823820225 LTS-013 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.394 1 NA NA NA NA NA LTS-013 chr1 17009684 17012093 2410 * character(0) 0.371707975754645 4 0.0192418814048939 1.89012044593804 58 0.498035535920202 19 12 7 -6.73993064864601 LTS-013 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.79 1 NA NA NA NA NA LTS-013 chr1 17017583 17198473 180891 * c(MST1L, ESPNP, CROCC) 0.27377689683184 26 0.0983914708623747 1.37741308697712 212 0.460258204265366 5 4 1 -6.73583563351544 LTS-013 chr1 17198474 17274945 76472 * CROCC 0.358282528851964 7 0.163471564441503 1.79557114722538 82 0.502062283721774 9 6 3 -6.73771961057929 LTS-013 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.887 1 NA NA NA NA NA LTS-013 chr1 17275408 22191454 4916047 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, PADI4, AKR7L, ALPL, TMCO4, PLA2G2D, PADI1, PLA2G2E, HSPG2, HTR6, LINC01141, PADI6, PLA2G2C, SH2D5, LDLRAD2, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, CAMK2N1, RCC2, KIF17, RAP1GAP, SDHB, RPS14P3, PLA2G2F, NA NA NA NA NA NA NA NA NA LTS-013 PINK1, MUL1, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, ALDH4A1, EIF4G3, CROCC, CDA) 0.341336675724524 182 0.0761010116427077 1.11652924990606 6094 0.506920974218756 4 3 1 -6.79196230469341 LTS-013 NA NA NA NA LTS-013 chr1 22191455 22191527 73 * HSPG2 0 1 NA 2.905 1 NA NA NA NA NA LTS-013 chr1 22191528 22592853 401326 * c(CELA3A, CELA3B, LINC00339, HSPG2, WNT4, CDC42) 0.195432645260875 9 0.155509467378821 1.12087467157377 378 0.360368596874029 4 4 0 -6.81681319252423 LTS-013 chr1 22592854 22816339 223486 * ZBTB40 NA 0 NA 0.746 1 NA NA NA NA NA LTS-013 chr1 22816340 22985873 169534 * c(EPHA8, C1QA, C1QB, C1QC, ZBTB40) 0.309608155588017 6 0.243534597131496 0.853903689757757 401 0.292560403060467 3 2 1 -6.78917562479231 LTS-013 chr1 22985874 23045943 60070 * c(EPHB2, C1QB) 0.434 1 NA 0.760418095088817 27 0.213872702240218 2 2 0 -5.76970841936656 LTS-013 chr1 23045944 25586803 2540860 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHB2, KDM1A, FUCA1, GALE, MDS2, CLIC4, SYF2, LOC284632, HMGCL, HTR1D, ID3, NCMAP, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, C1orf234, LUZP1, ZNF436, RUNX3, STPG1) 0.412670878001808 95 0.111283502448176 0.815723391911307 3328 0.241119419354411 3 2 1 -7.02195256372354 LTS-013 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 1.332 1 NA NA NA NA NA LTS-013 chr1 25598904 25656954 58051 * c(RSRP1, RHD) NA 0 NA 1.50673345227933 79 0.445147063504529 6 NA NA -5.76441464010714 LTS-013 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.981 1 NA NA NA NA NA LTS-013 chr1 25666924 33283528 7616605 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, DCDC2B, LINC01225, PDIK1L, PAQR7, FAM76A, TXLNA, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, HMGN2, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, NA NA NA NA NA NA NA NA NA LTS-013 STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SNORD103A, ZBTB8B, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.430525607445312 117 0.0819524924739558 0.809560114536995 9464 0.197157683636487 3 2 1 -8.03105827549257 LTS-013 NA NA NA NA LTS-013 chr1 33283529 33323192 39664 * c(S100PBP, YARS) 0 1 NA 0.791741902405448 73 0.19472554545244 2 2 0 -5.77379889784374 LTS-013 chr1 33323193 34329073 1005881 * c(MIR3605, AZIN2, TMEM54, CSMD2, HMGB4, RNF19B, A3GALT2, ZNF362, PHC2, AK2, FNDC5, HPCA, TRIM62, S100PBP, ZSCAN20) 0.248043272472484 15 0.211887706108684 0.812903043750374 1302 0.292839105358761 3 3 0 -6.89075232621872 LTS-013 chr1 34329074 34330067 994 * c(CSMD2, HMGB4) 0.468 1 NA 0.831106870228429 21 0.357212348477431 3 3 0 -5.76443989156928 LTS-013 chr1 34330068 35229062 898995 * c(CSMD2, GJB4, HMGB4, GJB5, CSMD2-AS1, C1orf94) 0.286737990174081 4 0.200961024413525 0.850502992012028 186 0.38806101577154 3 2 1 -6.87696609973996 LTS-013 chr1 35229063 35563022 333960 * c(TMEM35B, SMIM12, GJB4, GJA4, GJB3, DLGAP3, LOC653160, ZMYM1, ZMYM6) 0.420239758169485 7 0.0654493624691566 0.714364522397226 446 0.17261150010722 2 1 1 -6.73572140378921 LTS-013 chr1 35563023 35563028 6 * ZMYM1 NA 0 NA 0.849 1 NA NA NA NA NA LTS-013 chr1 35563029 39571211 4008183 * c(MIR4255, MIR3659, GJA9-MYCBP, MIR5581, SF3A3, C1orf122, OSCP1, C1orf216, COL8A2, CSF3R, MANEAL, AGO3, AGO4, FHL3, NCDN, MACF1, MYCBP, AGO1, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, TFAP2E, INPP5B, MTF1, NDUFS5, UTP11, POU3F1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, MAP7D1, PSMB2, CLSPN, RRAGC, SFPQ, MEAF6, MRPS15, LINC01137, DNALI1, AKIRIN1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, NA NA NA NA NA NA NA NA NA LTS-013 ZC3H12A, STK40, LSM10, ZMYM4, THRAP3) 0.337048522644639 46 0.114519489723671 0.953127509178144 4400 0.311443457189226 3 2 1 -6.90480013559124 LTS-013 NA NA NA NA LTS-013 chr1 39571212 39571446 235 * MACF1 NA 0 NA 0.713869760990246 5 0.144878569843852 2 NA NA -5.76441251641604 LTS-013 chr1 39571447 39670322 98876 * MACF1 NA 0 NA 1.525 1 NA NA NA NA NA LTS-013 chr1 39670323 39734274 63952 * MACF1 0.466 1 NA 1.12302795555269 39 0.239751316278389 4 4 0 -5.76470108386373 LTS-013 chr1 39734275 41327086 1592812 * c(NFYC-AS1, ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, CITED4, MACF1, HEYL, ZFP69, BMP8A, MIR30C1, MIR30E, MYCL, NFYC, HPCAL4, TRIT1, PPT1, RLF, OXCT2, KIAA0754, SMAP2, EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3) 0.414312370269628 42 0.0835273606477015 1.21498041451481 2931 0.305872041220454 5 3 2 -6.7858223284487 LTS-013 chr1 41327087 41327167 81 * CITED4 NA 0 NA 1.17 1 NA NA NA NA NA LTS-013 chr1 41327168 47398228 6071061 * c(LOC100129924, EFCAB14-AS1, KDM4A-AS1, SLFNL1-AS1, MKNK1-AS1, MIR5584, TSPAN1, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, SLFNL1, FAAH, FOXJ3, SCMH1, MAST2, SZT2, MMACHC, BEST4, SNORD55, RIMKLA, GUCA2A, GUCA2B, C1orf228, TCTEX1D4, NA NA NA NA NA NA NA NA NA LTS-013 IPP, SVBP, TEX38, NSUN4, LINC01144, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, YBX1, PRDX1, ZNF691, TMEM69, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, P3H1, ATPAF1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, HECTD3, PPCS, HYI, ZMYND12, RAD54L, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SNORD38B, IPO13, KDM4A, EFCAB14, CDC20) 0.444112469629638 143 0.0859052794038261 1.1491798835569 7614 0.278792889488883 4 2 2 -6.87157828063813 LTS-013 NA NA NA NA LTS-013 chr1 47398229 47398496 268 * CYP4A11 0.357 1 NA 1.29325889950836 7 1.30391472844186 5 5 0 -5.76441013681763 LTS-013 chr1 47398497 47608983 210487 * c(CYP4A11, CYP4Z1, CYP4X1, CYP4A22) 0.195590839143717 9 0.221757813340991 1.1885833955371 207 1.58958818026953 7 6 1 -6.74082183566405 LTS-013 chr1 47608984 47609407 424 * CYP4A22 0.419 1 NA 1.34753512939401 5 1.64718010551366 5 5 0 -5.7644102580275 LTS-013 chr1 47609408 52373835 4764428 * c(MIR761, LINC00853, PDZK1IP1, CDKN2C, FAF1, OSBPL9, ELAVL4, SLC5A9, EPS15, TTC39A, FOXE3, FOXD2, RNF11, CYP4A22, C1orf185, TRABD2B, SKINT1L, NRDC, CMPK1, SPATA6, RAB3B, DMRTA2, STIL, TAL1, BEND5, FOXD2-AS1, AGBL4) 0.43111475450688 58 0.113210456144829 1.15289304392401 2305 0.415930163871189 4 2 2 -6.7760091766181 LTS-013 chr1 52373836 52373863 28 * RAB3B 0.417 1 NA 3.302 1 NA NA NA NA NA LTS-013 chr1 52373864 52486348 112485 * c(TXNDC12, RAB3B) 0.213557936460432 9 0.226494542490052 1.25664368940177 264 0.782673984753742 6 5 1 -6.74126146109511 LTS-013 chr1 52486349 52498370 12022 * c(KTI12, TXNDC12) 0.485 1 NA 1.08689696562334 41 0.202848603883687 4 4 0 -5.76443464137366 LTS-013 chr1 52498371 65867391 13369021 * c(LINC01135, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, KTI12, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, CC2D1B, AK4, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, GPX7, ALG6, FAM151A, FAM159A, JAK1, JUN, MROH7, LDLRAD1, NA NA NA NA NA NA NA NA NA LTS-013 MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, ROR1, ORC1, TXNDC12, MRPL37, HOOK1, HSPB11, PGM1, YIPF1, L1TD1, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, PRKAA2, NDC1, CACHD1, CYB5RL, SCP2, DMRTB1, SLC1A7, COA7, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, ZYG11B, TM2D1, EFCAB7, ATG4C, PRPF38A, DOCK7, PLPP3, BTF3L4, ZFYVE9, TMEM59, DNAJC6) 0.412947019588243 142 0.149228034708706 1.16565081737239 8273 0.357872325807329 4 2 2 -6.93862078996404 LTS-013 NA NA NA NA LTS-013 chr1 65867392 65879252 11861 * DNAJC6 0.482 1 NA 1.17423081907778 41 0.288032681495965 4 4 0 -5.76477767840117 LTS-013 chr1 65879253 71530301 5651049 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, HHLA3, CTH, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, LEPR, C1orf141, PDE4B, PIN1P1, LEPROT, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.449469989595635 74 0.0665571284788591 1.17639142082844 3211 0.428446974189062 4 2 2 -6.9362254003619 LTS-013 chr1 71530302 78105289 6574988 * c(ZRANB2-AS1, PIGK, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, MIR186, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT, ZRANB2) 0.459883109587563 58 0.0667117482177782 1.26845131862578 2254 0.392785755308689 5 3 2 -7.12483163446424 LTS-013 chr1 78105290 78161686 56397 * c(USP33, ZZZ3) NA 0 NA 1.158 1 NA NA NA NA NA LTS-013 chr1 78161687 79003355 841669 * c(DNAJB4, MGC27382, USP33, MIGA1, GIPC2, PTGFR, FUBP1, NEXN) 0.425906024248339 12 0.0461735855224608 1.18079499799333 668 0.307758325493052 4 2 2 -6.77200551506376 LTS-013 chr1 79003356 79003523 168 * PTGFR 0.333 1 NA 1.59807451892817 5 0.746274949331679 7 7 0 -5.76441080647825 LTS-013 chr1 79003524 79474751 471228 * c(IFI44, IFI44L, PTGFR, ADGRL4) 0.324800959026683 6 0.166894877093337 1.11344922123417 273 0.424985583649684 4 3 1 -6.73428967461914 LTS-013 chr1 81967377 84791344 2823968 * c(MIR548AP, SAMD13, ADGRL2, PRKACB, TTLL7) 0.314496092700963 11 0.205544819266438 0.806249332327257 661 0.271979502208871 3 2 1 -7.06342390764927 LTS-013 chr1 84791345 84880380 89036 * c(SAMD13, UOX, DNASE2B) 0.39 1 NA 0.804187854923822 75 0.203621745241355 3 3 0 -5.78074679986445 LTS-013 chr1 84880381 89325937 4445557 * c(LINC01364, MIR4423, SSX2IP, CLCA1, WDR63, C1orf52, CTBS, CLCA4, LPAR3, DDAH1, MCOLN2, COL24A1, GNG5, GTF2B, LINC01140, CYR61, LINC01555, SH3GLB1, ZNHIT6, MCOLN3, PKN2, ODF2L, DNASE2B, LOC646626, RPF1, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.418965610205055 59 0.0815471236298185 0.787600741559079 2646 0.746418535607996 2 1 1 -6.79804824842397 LTS-013 chr1 89325938 90493590 1167653 * c(GBP4, GBP5, GBP6, LRRC8B, GBP1, GBP2, GBP3, ZNF326, GTF2B, GBP7, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, LOC729930, LRRC8C) 0.404714668691503 23 0.0579646546247862 0.72898346195173 1278 0.165423268999195 2 1 1 -6.81119585501079 LTS-013 chr1 90493591 94334819 3841229 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, HFM1, DR1, MTF2, KIAA1107, EPHX4, GFI1, SNORA66, ZNF326, BTBD8, CCDC18, BARHL2, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, BCAR3, ZNF644) 0.281911802555448 19 0.136749995990891 0.897428290015303 2200 0.249983657399197 3 2 1 -7.03985535269094 LTS-013 chr1 94334820 97981395 3646576 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.340757381412941 22 0.0625587343070114 1.00165403864933 1392 0.256412316885215 4 3 1 -7.08966935251746 LTS-013 chr1 97981396 97981427 32 * DPYD NA 0 NA 0.877 1 NA NA NA NA NA LTS-013 chr1 97981428 108769455 10788028 * c(LINC01349, LOC100129138, LOC100129620, MIR2682, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, NTNG1, SLC35A3, AMY2A, AMY2B, SLC25A24, FRRS1, MIR137HG, MIR137, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, MFSD14A, ACTG1P4, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.350326722264214 30 0.079237523039727 0.928000243015792 2977 0.241863096258965 3 2 1 -6.92939390084169 LTS-013 chr1 108769456 108771558 2103 * NBPF4 NA 0 NA 1.296 1 NA NA NA NA NA LTS-013 chr1 108771559 115168097 6396539 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, ATXN7L2, C1orf194, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, NBPF4, CHIAP2, DENND2C, FNDC7, UBL4B, CELSR2, HIPK1, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, PPM1J, NA NA NA NA NA NA NA NA NA LTS-013 MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, PRPF38B, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, RBM15, DCLRE1B, NBPF6, SLC16A1, SCARNA2, STXBP3, TAF13, WNT2B, WDR77, EPS8L3, DENND2D, CAPZA1, GPR61, PROK1, PSRC1, STRIP1, SLC16A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CD53, LRIG2) 0.388060926056664 130 0.0904781787771178 1.0913282979597 7814 0.305144049695613 4 2 2 -6.80627366716097 LTS-013 NA NA NA NA LTS-013 chr1 115168098 115218123 50026 * c(DENND2C, AMPD1) 0 1 NA 1.18493617607296 41 0.6556342777018 4 4 0 -5.76479805443651 LTS-013 chr1 115218124 115468943 250820 * c(AMPD1, NRAS, SYCP1, CSDE1, SIKE1) 0.392646515222994 2 0.0431335136523794 1.09917197602867 422 0.274523420088934 5 3 2 -6.83969950704834 LTS-013 chr1 115468944 120611690 5142747 * c(MIR942, MIR320B1, TSPAN2, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, NBPF7, ATP1A1, NGF, NHLH2, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, SYCP1, TBX15, TSHB, VTCN1, TRIM45, VANGL1, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.320529225046929 94 0.107884285710107 1.18248508165977 3893 0.499099552689056 4 3 1 -6.79773935338358 LTS-013 chr1 120611691 121310035 698345 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.344055328661227 11 0.1054447722744 0.96576655730672 100 0.367803694210305 4 3 1 -6.82157386025794 LTS-013 chr1 121310036 121313547 3512 * EMBP1 NA 0 NA 1.04053387218928 23 0.251713126443011 4 NA NA -5.76451224025109 LTS-013 chr1 143912360 144013853 101494 * FAM72D 0.281 1 NA 0.899309510767971 5 0.245846903580257 3 3 0 -5.76441106721129 LTS-013 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.413756573791621 59 0.0918164095811912 1.10885014157902 523 0.343955088182146 4 2 2 -6.7355898436294 LTS-013 chr1 145075855 145075923 69 * c(NBPF20, PDE4DIP) 0.268 1 NA 1.2839818383973 3 0.711284284469531 5 5 0 -5.76441014625258 LTS-013 chr1 145075924 146509854 1433931 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, SEC22B, PDE4DIP, RBM8A) 0.267666071163166 33 0.10161629402867 1.0940803964201 1515 0.513935607764138 5 4 1 -6.82815200803177 LTS-013 chr1 146509855 146514442 4588 * c(NA, NA, NA, LOC728989) 0.419 1 NA 1.07403467012325 14 0.495355755165744 4 4 0 -5.76441644992643 LTS-013 chr1 146514443 147806762 1292320 * c(LINC00624, MIR5087, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.412996256920803 24 0.059059230892581 1.12600792797521 715 0.293038909484795 4 2 2 -6.74489035936103 LTS-013 chr1 147806763 148195957 389195 * c(NBPF14, LINC01138) NA 0 NA 0.403122723198462 51 0.0885221673799679 1 NA NA -6.91662662181787 LTS-013 chr1 148902222 152760557 3858336 * c(C1orf68, LOC100132111, FCGR1CP, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, BNIPL, CTSK, CTSS, ECM1, LCE4A, ENSA, FCGR1A, FLG, POGZ, RPRD2, CA14, LCE5A, LCE2B, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, LOC388692, LYSMD1, HRNR, FLG2, NA NA NA NA NA NA NA NA NA LTS-013 ARNT, MCL1, HIST2H2BF, KPRP, CRNN, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, LOC645166, MRPL9, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, LCE3D, SELENBP1, PRPF3, SETDB1, SV2A NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ) 0.406463268138075 91 0.0864269847178744 1.11601025999846 6261 0.574412125216694 4 2 2 -6.74777050943471 LTS-013 NA NA NA NA LTS-013 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.436 1 NA NA NA NA NA LTS-013 chr1 152760642 152777473 16832 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.32155036868238 39 1.21663303726655 10 NA NA -5.76441086076365 LTS-013 chr1 152777474 152777490 17 * LCE1C NA 0 NA 1.346 1 NA NA NA NA NA LTS-013 chr1 152777491 158226814 5449324 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, NA NA NA NA NA NA NA NA NA LTS-013 RUSC1-AS1, LAMTOR2, HDGF, S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, KIRREL, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, FCRL5, FCRL4, TMEM79, ADAM15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 AQP10, SH2D2A, PYGO2, CD1A, NUP210L, CD1D, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.401038590177006 130 0.0893642319449071 1.12742221106359 11367 0.260367270729035 4 2 2 -6.78750648127863 LTS-013 NA NA NA NA LTS-013 chr1 158226815 158227827 1013 * CD1A 0 1 NA 1.47084713416722 17 1.10262743027734 6 6 0 -5.76441031575584 LTS-013 chr1 158227828 158819324 591497 * c(OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, OR10R2, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, SPTA1, OR6N2, OR6K2, CD1A, CD1B, CD1C, CD1E) 0.340879987439085 47 0.133051585219135 1.17785934587755 871 0.791064916135234 4 3 1 -6.75352279414283 LTS-013 chr1 158819325 158987995 168671 * c(PYHIN1, IFI16) 0.417 1 NA 1.03197831712702 81 0.14650430407026 4 4 0 -5.78346575230993 LTS-013 chr1 158987996 161561445 2573450 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, COPA, CRP, ITLN2, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, VSIG8, LY9, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, NA NA NA NA NA NA NA NA NA LTS-013 SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.375767875455179 90 0.086981020932712 1.12330027204153 4775 0.337882428540362 4 2 2 -6.88581798633134 LTS-013 NA NA NA NA LTS-013 chr1 161561446 161570518 9073 * FCGR2C 0.37 1 NA 0.709028322437673 45 0.300889450822327 2 2 0 -5.76441888618263 LTS-013 chr1 161570519 170706646 9136128 * c(MIR921, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, DDR2, PBX1, HSD17B7, PRRX1, TMCO1, POU2F1, C1orf112, NA NA NA NA NA NA NA NA NA LTS-013 ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, UCK2, LINC00626, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.366993610650603 130 0.115136713219839 1.11425420957021 5730 0.365214180599524 4 3 1 -6.84711122401893 LTS-013 NA NA NA NA LTS-013 chr1 170706647 178819828 8113182 * c(MIR1295A, RASAL2-AS1, MIR3120, LOC100506023, GAS5-AS1, MIR4424, DNM3OS, MIR1295B, RC3H1, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, FMO6P, C1orf220, ASTN1, SERPINC1, MYOC, SUCO, METTL13, PIGC, PRRX1, RALGPS2, DARS2, MIR488, BRINP2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, NA NA NA NA NA NA NA NA NA LTS-013 TOP1P1, TNFSF4, LOC730102, LOC730159, MROH9, TEX35, ZBTB37, VAMP4, SEC16B, TNFSF18, ANGPTL1, CENPL, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, RABGAP1L) 0.419820431113034 100 0.128392892515454 1.35874506930886 4863 0.933906683829895 5 3 2 -6.75177248067815 LTS-013 NA NA NA NA LTS-013 chr1 178819829 196716667 17896839 * c(GM140, GS1-279B7.1, MIR1278, MIR548F1, MIR3121, LHX4-AS1, MIR4735, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, CFH, MR1, BRINP3, KCNT2, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, IER5, PDC, UCHL5, PLA2G4A, SWT1, NA NA NA NA NA NA NA NA NA LTS-013 C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, TOR3A, RGS18, SOAT1, TROVE2, TPR, CACNA1E, NPHS2, CDC73, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, B3GALT2, LHX4, ANGPTL1, XPR1, CEP350, SMG7, FAM20B) 0.373660232424316 180 0.081592941867737 1.20225942121485 8970 0.325990663844834 5 3 2 -7.37801218787033 LTS-013 NA NA NA NA LTS-013 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.763 1 NA NA NA NA NA LTS-013 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.699874564608402 113 0.24417434180769 2 NA NA -5.7644106344772 LTS-013 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.172 1 NA NA NA NA NA LTS-013 chr1 196857130 197902045 1044916 * c(CFHR4, DENND1B, F13B, CRB1, ASPM, CFHR2, ZBTB41, C1orf53, LHX9, CFHR5) 0.398492305086641 24 0.0488567671428654 1.13359784744437 1240 0.279761606940314 4 2 2 -6.8474317376929 LTS-013 chr1 197902046 198665917 763872 * c(ATP6V1G3, NEK7, PTPRC) 0.346 1 NA 1.10990988530505 231 0.346599895280198 4 4 0 -5.764727990627 LTS-013 chr1 198665918 200342331 1676414 * c(MIR181A1HG, NR5A2, MIR181B1, MIR181A1, LINC00862, PTPRC) 0.112250228927504 3 0.191102939101766 1.14942277842117 348 0.761019648038333 4 4 0 -6.74657544979868 LTS-013 chr1 200342332 200375879 33548 * c(ZNF281, LINC00862) NA 0 NA 1.63 1 NA NA NA NA NA LTS-013 chr1 200375880 201047111 671232 * c(KIF21B, CAMSAP2, ZNF281, GPR25, C1orf106, CACNA1S, DDX59, KIF14) 0.329178972554261 14 0.155251745225632 1.22981084012937 1082 0.450545567552702 4 3 1 -6.76084612308113 LTS-013 chr1 201047112 201052310 5199 * CACNA1S 0.417 1 NA 1.3655989759933 5 0.266762628567046 5 5 0 -5.76451809709293 LTS-013 chr1 201052311 201986196 933886 * c(MIR1231, MIR5191, TIMM17A, CSRP1, SHISA4, ELF3, PHLDA3, TMEM9, LMOD1, RPS10P7, LAD1, PKP1, IPO9, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1) 0.386784158735105 54 0.0483118545494477 1.27351607270654 1787 0.329363161188575 5 3 2 -6.82202813025435 LTS-013 chr1 201986197 214546280 12560084 * c(ZBED6, MIR4260, MIR3122, PCAT6, LINC00538, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, TATDN3, ADORA1, CR1, CR1L, CR2, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, SLC41A1, SYT14, DSTYK, INTS7, NSL1, OPTC, RPS6KC1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, UBE2T, NA NA NA NA NA NA NA NA NA LTS-013 NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, KISS1, TMEM81, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PLXNA2, LAX1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN7, PTPN14, RABIF, RBBP5, KLHL12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 LGR6, REN, MGAT4EP, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, SLC30A1, BTG2, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, LPGAT1) 0.424964990287609 282 0.101790412636912 1.05251833724039 12249 0.271679364175226 4 2 2 -6.92601128112144 LTS-013 NA NA NA NA LTS-013 chr1 214546281 214549557 3277 * PTPN14 NA 0 NA 1.454 1 NA NA NA NA NA LTS-013 chr1 214549558 231299728 16750171 * c(NA, MIR1182, MIR320B2, MIR3620, MIR4666A, MIR4742, MIR5008, LINC00210, BPNT1, CENPF, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, LYPLAL1, DNAH14, SPATA17, MRPL55, HIST3H2BB, PARP1, BROX, CNIH3, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, ESRRG, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK2, NA NA NA NA NA NA NA NA NA LTS-013 CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, RRP15, TRIM17, KCTD3, MARC2, SUSD4, GPATCH2, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, PTPN14, ACTA1, RHOU, RAB4A, LYPLAL1-AS1, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, TGFB2, LEFTY2, TLR5, TP53BP2, TGFB2-AS1, USH2A, WNT9A, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, WDR26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 TRIM11, CAPN2, HIST3H3, MIXL1, OBSCN, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.389518138934474 281 0.0880216380766687 1.14145659001556 11366 0.306600814808863 4 2 2 -6.94509176765063 LTS-013 NA NA NA NA LTS-013 chr1 231299729 231333106 33378 * c(LOC149373, TRIM67) NA 0 NA 1.347 1 NA NA NA NA NA LTS-013 chr1 231333107 243727157 12394051 * c(AKT3, LOC100130331, LINC00582, LGALS8-AS1, MIR1537, LINC00184, TSNAX-DISC1, MIR3123, LINC01354, LINC01132, MIR4753, MIR4677, MIR4671, MIR4427, SDCCAG8, CHML, LYST, CHRM3, WDR64, C1orf131, EDARADD, SLC35F3, B3GALNT2, EXOC8, PLD5, FH, RBM34, OPN3, DISC2, DISC1, GNG4, LINC01139, IRF2BP2, KCNK1, COA6, LGALS8, TRIM67, MAP1LC3C, MTR, NID1, ARID4B, EGLN1, MAP10, HEATR1, ERO1B, FMN2, SIPA1L2, ZP4, RGS7, RYR2, NA NA NA NA NA NA NA NA NA LTS-013 GREM2, SNRPD2P2, MT1HL1, RPS7P5, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, LINC01347, PCNX2, SPRTN, NTPCR, GNPAT, MLK4, KMO, ACTN2, EXO1, GGPS1, TOMM20, CEP170) 0.428928792097202 127 0.130389486051372 1.308927713852 6913 0.341425592524282 5 3 2 -6.75601252111434 LTS-013 NA NA NA NA LTS-013 chr1 243727158 243736212 9055 * AKT3 NA 0 NA 1.586 1 NA NA NA NA NA LTS-013 chr1 243736213 245290451 1554239 * c(AKT3, ZBTB18, COX20, ADSS, C1orf100, C1orf101, NA, HNRNPU, LOC339529, DESI2, EFCAB2) 0.360128352342449 5 0.204313484625954 1.4033882720441 862 0.609836893721402 6 4 2 -6.74408088359461 LTS-013 chr1 245290452 245318279 27828 * character(0) NA 0 NA 0.884 1 NA NA NA NA NA LTS-013 chr1 245318280 247587477 2269198 * c(MIR3916, ZNF670-ZNF695, NLRP3, LINC01341, CNST, LOC255654, AHCTF1, C1orf229, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, ZNF496, ZNF670) 0.371908705058718 26 0.0880722168712437 1.12668071764331 1316 0.340600503043014 4 2 2 -6.90886059396654 LTS-013 chr1 247587478 247588476 999 * NLRP3 0 1 NA 1.23297782470497 23 1.13491104629568 5 5 0 -5.7644114173848 LTS-013 chr1 247588477 247694500 106024 * c(NLRP3, OR2B11, GCSAML, GCSAML-AS1, OR2W5, OR2C3) 0.269266639443017 9 0.197915385960769 1.2717796098451 135 1.05431306101397 5 4 1 -6.73305825084653 LTS-013 chr1 247694501 247702118 7618 * c(GCSAML, OR2C3) 0.446 1 NA 1.20062068187942 34 0.364441805736212 5 5 0 -5.76462553722749 LTS-013 chr1 247702119 247875608 173490 * c(GCSAML, OR6F1, OR13G1, OR2G3, OR2G2) 0.435817176483044 12 0.0320893638566936 1.20427088439151 190 0.5442970271071 4 2 2 -6.8904902097638 LTS-013 chr1 247875609 247875697 89 * OR6F1 0 1 NA 2.96522832296501 3 6.55900376073481 13 13 0 -5.764410135323 LTS-013 chr1 247875698 248814126 938429 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35, OR2L5) 0.310569950542755 55 0.0775966520156663 1.21865936641011 854 1.25911090523184 4 3 1 -6.74213007622703 LTS-013 chr1 248814127 249214134 400008 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) NA 0 NA 1.13730648608631 325 0.231467071246052 4 NA NA -5.76943670164184 LTS-013 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.222 1 NA 1.01432470698208 85 0.247941885754474 4 4 0 -5.77586612727847 LTS-013 chr2 218387 13555050 13336664 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, MIR4429, LINC00570, PDIA6, YWHAQ, CMPK2, MBOAT2, TMEM18, C2orf50, PQLC3, LINC01105, E2F6, CYS1, MYT1L, LPIN1, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, C2orf48, KCNF1, RNF144A-AS1, LOC400940, LINC00487, ODC1, TRAPPC12, CPSF3, ACP1, SNTG2, ADI1, NA NA NA NA NA NA NA NA NA LTS-013 ALLC, KIDINS220, RPS7, RRM2, SOX11, ADAM17, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, NOL10, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.152495304695613 148 0.0529252348463828 0.97318210821521 5258 0.282256402382093 3 3 0 -7.33698895380102 LTS-013 NA NA NA NA LTS-013 chr2 14774033 19553653 4779621 * c(NT5C1B-RDH14, MIR4757, MYCNOS, OSR1, FAM84A, DDX1, MSGN1, GEN1, KCNS3, MYCN, NBAS, RDH14, RAD51AP2, VSNL1, SMC6, FAM49A, NT5C1B) 0.104786668554119 45 0.035435344451037 1.55127913301299 1408 0.404812553786909 6 6 0 -6.76151939987923 LTS-013 chr2 20096419 23730085 3633667 * c(KLHL29, TTC32, GDF7, PUM2, APOB, RHOB, MATN3, WDR35, LDAH, SDC1, HS1BP3, LOC645949, LAPTM4A) 0.0750995707125821 31 0.0777373438165719 1.89287127471554 1577 0.51215399057431 8 8 0 -6.73505271838645 LTS-013 chr2 23730086 27802145 4072060 * c(OST4, MIR1301, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, KRTCAP3, FKBP1B, MAPRE3, EFR3B, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, PFN4, FAM228B, KCNK3, KHK, KIF3C, MFSD2B, PTRHD1, MPV17, ITSN2, DNAJC27, ATRAID, SF3B6, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, NA NA NA NA NA NA NA NA NA LTS-013 AGBL5, FNDC4, FAM228A, DNAJC27-AS1, UCN, SLC30A3, CAD, CENPO, WDCP, C2orf16, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, DRC1, OTOF, TP53I3, SNX17) 0.131864946929321 109 0.041331941954813 1.0950945950587 6453 0.295517386391183 4 4 0 -6.74334253050751 LTS-013 NA NA NA NA LTS-013 chr2 27802146 27857805 55660 * c(GPN1, CCDC121, C2orf16, ZNF512) NA 0 NA 1.03444243819269 270 0.1858235400831 4 NA NA -5.76804073704236 LTS-013 chr2 27857806 28761981 904176 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, SLC4A1AP, FOSL2, RBKS, ZNF512, MRPL33, BRE, SUPT7L) 0.454 1 NA 1.72721752858053 723 0.353355323659905 7 7 0 -5.76560788308464 LTS-013 chr2 28761982 30865405 2103424 * c(PLB1, FAM179A, WDR43, ALK, SPDYA, LCLAT1, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, SNORD92, CLIP4, LBH) 0.4478870241154 52 0.0731910968054429 1.70487776133074 1515 0.419444635079962 7 4 3 -6.86366330510732 LTS-013 chr2 30865406 30867110 1705 * LCLAT1 NA 0 NA 0.778569091630485 43 0.663681515435936 2 NA NA -5.76443603170797 LTS-013 chr2 30867111 30953511 86401 * CAPN13 NA 0 NA 1.642 1 NA NA NA NA NA LTS-013 chr2 30953512 33952850 2999339 * c(LOC100271832, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.408796530935469 25 0.157904507007664 1.7578040132727 2269 0.543365250723221 7 4 3 -6.7406371693287 LTS-013 chr2 36583084 48822381 12239298 * c(SLC8A1-AS1, LINC01126, LINC01119, ARHGEF33, CEBPZOS, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, STON1, PPP1R21, PLEKHH2, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, EPAS1, RHOQ, HAAO, PRKD3, GPATCH11, QPCT, EML4, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, MSH6, FOXN2, CDKL4, LOC375196, LOC388942, TMEM247, LINC01118, SULT6B1, C2orf91, LINC01121, EPCAM, MSH2, CRIM1, DYNC2LI1, VIT, PIGF, HEATR5B, PPM1B, NA NA NA NA NA NA NA NA NA LTS-013 SRBD1, NDUFAF7, PRKCE, EIF2AK2, KCNK12, TTC7A, MTA3, THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, ZFP36L2, STRN, MIR559, LOC728730, C1GALT1C1L, MORN2, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, MAP4K3, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, CRIPT, PREPL, FEZ2, SOCS5) 0.444540609721588 166 0.0894688511128854 1.0541453828937 7821 0.666417709230626 4 2 2 -6.80994982903685 LTS-013 NA NA NA NA LTS-013 chr2 48822382 48824282 1901 * c(STON1, STON1-GTF2A1L) 0 1 NA 1.11905911523882 32 0.278061891172776 4 4 0 -5.76441456649585 LTS-013 chr2 48824283 56103874 7279592 * c(MIR3682, GPR75, GTF2A1L, STON1, CFAP36, C2orf73, CLHC1, EFEMP1, PSME4, FSHR, ERLEC1, STON1-GTF2A1L, PRORSD1P, TSPYL6, LHCGR, EML6, MTIF2, CHAC2, ASB3, CCDC88A, RPL23AP32, RTN4, PPP4R3B, RPS27A, SPTBN1, PNPT1, NRXN1, ACYP2) 0.408051037392675 56 0.153113622821441 1.04548216178483 2912 0.313614732927113 4 2 2 -6.84819194131888 LTS-013 chr2 56103875 56104801 927 * EFEMP1 NA 0 NA 0.872 1 NA NA NA NA NA LTS-013 chr2 56104802 56603118 498317 * c(MIR216B, CCDC85A, EFEMP1, MIR216A, MIR217) 0.369014181557227 4 0.0434702963719672 0.881687065155149 106 0.201899412743395 3 2 1 -6.79087148907219 LTS-013 chr2 56603119 56612246 9128 * CCDC85A 0 1 NA 1.39162384231958 21 1.09508429551597 5 5 0 -5.76443156881815 LTS-013 chr2 56612247 63832570 7220324 * c(SNORA70B, LOC100132215, DBIL5P2, MIR4432, MIR5192, CCT4, B3GNT2, CCDC85A, AHSA2, COMMD1, PUS10, TMEM17, EHBP1, LOC339803, C2orf74, LINC01122, LINC01185, MDH1, OTX1, WDPCP, PEX13, BCL11A, FANCL, REL, PAPOLG, VRK2, XPO1, FAM161A, KIAA1841, USP34) 0.332527707995563 26 0.136483129416733 0.887054415025076 2281 0.24534161262698 3 2 1 -6.82693813308555 LTS-013 chr2 63832571 63833069 499 * MDH1 NA 0 NA 0.802 1 NA NA NA NA NA LTS-013 chr2 63833070 69741609 5908540 * c(MIR3126, MIR4434, MIR4778, ACTR2, C1D, PROKR1, WDR92, LINC00309, GKN2, APLF, SPRED2, AAK1, CEP68, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, LOC339807, LOC400958, MDH1, MEIS1, VPS54, PLEK, ETAA1, AFTPH, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, UGP2, ANTXR1, SERTAD2, ARHGAP25) 0.308982804445067 38 0.079122085473481 0.83366763289876 2722 0.232557027778422 3 2 1 -7.57051066878275 LTS-013 chr2 69741610 70015181 273572 * c(SNORA36C, AAK1, ANXA4) 0.274 1 NA 0.83279653970466 87 0.144015483552314 3 3 0 -5.81193461140102 LTS-013 chr2 70015182 70047958 32777 * ANXA4 NA 0 NA 0.867404530224608 49 0.175706668437294 3 NA NA -5.76528600064158 LTS-013 chr2 70047959 70052494 4536 * ANXA4 NA 0 NA 0.756 1 NA NA NA NA NA LTS-013 chr2 70052495 73430192 3377698 * c(LOC100133985, MPHOSPH10, SNRNP27, TEX261, ADD2, ASPRV1, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, ANXA4, FIGLA, NOTO, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, CYP26B1, GMCL1, SNRPG, SPR, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, MCEE, FAM136A, SFXN5) 0.239984872208309 47 0.0802323003325422 0.785717265723857 3174 0.23284436610074 2 2 0 -7.24560892772029 LTS-013 chr2 73430193 73435569 5377 * NOTO NA 0 NA 0.647 1 NA NA NA NA NA LTS-013 chr2 73435570 87426066 13990497 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SMYD5, SEMA4F, CCT7, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, NOTO, LRRTM1, C2orf78, BOLA3, NA NA NA NA NA NA NA NA NA LTS-013 C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, PRADC1, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CD8B, MRPL19) 0.212132447186342 99 0.0633007874583471 0.732842624746849 7505 0.193076149361459 2 2 0 -7.16069696758647 LTS-013 NA NA NA NA LTS-013 chr2 87426067 87426072 6 * RMND5A NA 0 NA 0.792 1 NA NA NA NA NA LTS-013 chr2 87426073 90259965 2833893 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.115834377467893 18 0.0985927286557728 0.833696125024668 894 0.644073675995595 3 3 0 -6.91761768207097 LTS-013 chr2 90259966 91809324 1549359 * LOC654342 0.427 1 NA 0.835602518346731 13 0.34820985420304 3 3 0 -5.80659275078705 LTS-013 chr2 91809325 91937761 128437 * LOC654342 0.341974224317663 19 0.0755367537665648 1.05341752936449 72 0.907892413982936 7 5 2 -6.79192130515744 LTS-013 chr2 91937762 91955470 17709 * character(0) NA 0 NA 0.977497399912874 15 0.349109779432256 3 NA NA -5.76500207056193 LTS-013 chr2 95537183 95542363 5181 * c(TEKT4, LOC442028) 0.203 1 NA 1.18360721228333 42 0.530208575530066 4 4 0 -5.76446972309136 LTS-013 chr2 95542364 96521013 978650 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.133416465981892 13 0.112619281493457 1.1389997565653 716 0.345999989823929 4 4 0 -6.73969124162875 LTS-013 chr2 96521014 96601240 80227 * character(0) 0.468 1 NA 0.967563971625702 23 0.194150831712217 3 3 0 -5.77105807710686 LTS-013 chr2 96601241 96619774 18534 * character(0) 0.394345771689688 27 0.0799523005946068 1.08428606626883 62 0.516820297067175 5 3 2 -6.74564334728596 LTS-013 chr2 96619775 96780122 160348 * c(GPAT2, ADRA2B, FAHD2CP) 0.118 1 NA 1.0616935586911 136 0.229106084683964 4 4 0 -5.76669136627325 LTS-013 chr2 96780123 97526963 746841 * c(MIR3127, ARID5A, ITPRIPL1, ADRA2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ASTL, ANKRD39, SEMA4C, TMEM127, KANSL3, STARD7, LMAN2L, FER1L5, NEURL3, CIAO1) 0.141046882470214 18 0.0330818454251275 1.09706700294115 1705 0.242891884904089 4 4 0 -6.74139276913195 LTS-013 chr2 97526964 97818188 291225 * c(FAHD2B, ANKRD36, FAM178B, SEMA4C) 0.263 1 NA 1.10891303764529 293 0.262719985276007 4 4 0 -5.76458157344188 LTS-013 chr2 97818189 97877478 59290 * ANKRD36 0.374760675353735 9 0.111615535557456 0.957142830260744 49 0.247886983588596 3 2 1 -6.73787145085267 LTS-013 chr2 97877479 98354139 476661 * c(ACTR1B, COX5B, ANKRD36, ANKRD36B, LINC01125, ZAP70) 0.148 1 NA 1.08385470220758 198 0.210357414742476 4 4 0 -5.76579262076637 LTS-013 chr2 98354140 104996055 6641916 * c(LOC100287010, MIR4772, MIR5696, TXNDC9, TBC1D8, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, C2orf15, LONRF2, VWA3B, CREG2, TMEM131, LYG2, UNC50, RNF149, KIAA1211L, IL1R1, INPP4A, SLC9A4, AFF3, NPAS2, COA5, MRPL30, REV1, LIPT1, CNOT11, RPL31, SLC9A2, SNORD89, RFX8, ZAP70, IL1R2, PDCL3, TSGA10, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4, CHST10, EIF5B) 0.133414777821274 74 0.0423217366907339 1.07701440697351 4418 0.283425756549431 4 4 0 -6.75941104075492 LTS-013 chr2 104996056 129023875 24027820 * c(RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4783, MIR4782, ACTR3, MERTK, MAP3K2, EDAR, RABL2A, GPR45, RPL23AP7, CNTNAP5, FBLN7, C2orf76, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, LINC01106, SEPT10, SULT1C2P1, DBI, CCDC138, C1QL2, FOXD4L1, CFAP221, EN1, LINC00116, ERCC3, FHL2, CLASP1, PSD4, NIFK-AS1, IL36RN, IL36B, IL37, IL36A, SULT1C4, NA NA NA NA NA NA NA NA NA LTS-013 GLI2, BIN1, GPR17, LINC01114, LOC285000, PLGLA, RGPD4, TFCP2L1, GYPC, CYP27C1, SH3RF3, IL1A, IL1B, IL1RN, INHBB, WASH2P, ZC3H6, DPP10-AS1, LIMS1, FLJ42351, LINC01191, SULT1C3, MYO7B, NPHP1, INSIG2, MIR4435-2HG, POLR2D, CCDC93, POU3F3, STEAP3, ACOXL, WDR33, IWS1, LIMS2, PROC, IL36G, UGGT1, DPP10, EPB41L5, PTPN4, RALB, RANBP2, SLC5A7, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC20A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SULT1C2, BUB1, TSN, RGPD8, RGPD4-AS1, PAX8, MALL, C2orf49, TMEM185B, SAP130, UXS1, SLC35F5, TMEM177, AMMECR1L, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, SFT2D3, TMEM87B, LINC01101, MARCO, DDX18, TGFBRAP1, HS6ST1, GCC2) 0.170362500532472 166 0.0695212901533977 0.81222615963281 10369 0.249408576270012 3 3 0 -8.52488842354771 LTS-013 NA NA NA NA LTS-013 chr2 129023876 163695214 34671339 * c(TANK, CCNT2-AS1, RAB6C-AS1, CYP4F30P, LOC100144595, FAR2P2, ZEB2-AS1, MIR663B, MIR3679, LOC100507600, LY75-CD302, MIR4785, MIR4784, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, NXPH2, TUBA3E, TUBA3D, FMNL2, GALNT13, LYPD1, ACMSD, FAM168B, ACVR1C, LYPD6, LYPD6B, CCDC148, LOC150776, WTH3DI, ARL6IP6, WDSUB1, UPP2, DARS, DPP4, AMER3, FAP, PLA2R1, RAB3GAP1, UBXN4, R3HDM1, GCA, EPC2, ARL5A, GCG, PTPN18, NA NA NA NA NA NA NA NA NA LTS-013 MMADHC, GPD2, MED15P9, AHCTF1P1, GPR39, C2orf27A, BAZ2B, HNMT, SPOPL, NCKAP5, GPR148, ITGB6, RBM43, KCNJ3, KIF5C, LOC389033, LINC01120, RND3, LCT, NOC2LP2, TEX41, LY75, MIR128-1, C2orf27B, MCM6, MGAT5, FAR2P1, LOC440910, POTEE, NEB, NR4A2, ORC4, ARHGEF4, LRP1B, PLEKHB2, RIF1, CCDC148-AS1, ANKRD30BL, SMPD4, PRPF40A, MBD5, ARHGAP15, CFC1, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, YY1P2, MARCH7, POTEI, CFC1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 POTEJ, MZT2A, TNFAIP6, POTEF, PABPC1P2, CACNB4, CXCR4, GTDC1, MZT2B, MAP3K19, THSD7B, TMEM163, ZRANB3, RAB6C, CCDC115, PKP4, TANC1, KYNU, ACVR1, KCNH7, CCNT2, CCDC74A, NMI, CCDC74B, ACVR2A, DAPL1, IMP4, HS6ST1, CYTIP, ZEB2, CD302) 0.164769224640617 153 0.0790168154302806 0.958956908945457 12141 0.282478111288179 3 3 0 -7.62903117227698 LTS-013 NA NA NA NA LTS-013 chr2 163695215 165542581 1847367 * c(COBLL1, GRB14, FIGN, KCNH7) 0.133026106811637 6 0.0622149499718516 1.1262131513124 413 0.362192734620234 4 4 0 -6.74041049593339 LTS-013 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 0.925 1 NA NA NA NA NA LTS-013 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.128914862088176 49 0.063257383747982 0.988936763889887 3394 0.657751830279972 4 4 0 -6.8177771629498 LTS-013 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.861 1 NA NA NA NA NA LTS-013 chr2 170366321 183951865 13585545 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, NA NA NA NA NA NA NA NA NA LTS-013 HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.151607522358686 141 0.059903266330999 0.935986982516579 11257 0.260241789066814 3 3 0 -6.95290869461493 LTS-013 NA NA NA NA LTS-013 chr2 183951866 190728981 6777116 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.161432249155191 34 0.049893683760015 0.987253294306829 2946 0.442967984457032 3 3 0 -6.9136474698141 LTS-013 chr2 190728982 190732521 3540 * PMS1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-013 chr2 190732522 203826688 13094167 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, NA NA NA NA NA NA NA NA NA LTS-013 PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.14859418267529 102 0.0531498734409315 0.91000963201711 7929 0.27599638954955 3 3 0 -6.82036052320506 LTS-013 NA NA NA NA LTS-013 chr2 203826689 234346962 30520274 * c(LOC100129175, LOC100130451, MIR1471, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4777, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, NMUR1, SP140, CHRND, CHRNG, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, DIS3L2, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, CPO, MDH1B, FBXO36, CPS1, CREB1, NA NA NA NA NA NA NA NA NA LTS-013 AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, CYP27A1, DAW1, C2orf57, DES, EEF1B2, PIKFYVE, LOC200726, TIGD1, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, GIGYF2, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RUFY4, CPS1-IT1, ICOS, GMPPA, AGFG1, ACADL, DNAJB2, HTR2B, IDH1, SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, KCNJ13, PLEKHM3, C2orf80, RESP18, C2orf82, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, NCL, ATIC, NDUFS1, NEU2, NPPC, MIR375, SMARCAL1, PAX3, PDE6D, CAB39, SERPINE2, PRKAG3, FEV, INO80D, PID1, ATG16L1, ANKZF1, ASIC4, DOCK10, MREG, PECR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 C2orf83, MFF, PSMD1, CYP20A1, PTH2R, PTMA, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, SNORD20, RPE, RPL37A, BCS1L, SNORA41, SAG, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, PRSS56, COPS7B, RAPH1, NBEAL1, SLC4A3, MRPL44, SNORA75, LOC654841, SLC11A1, SP100, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, CARF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 NHEJ1, FAM124B, TM4SF20, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ITM2C, RHBDD1, CUL3, PLCD4, DGKD, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, DNER, GPR55, B3GNT7, TRIP12, SP140L, CD28, ECEL1, EIF4E2, TTLL4) 0.153751285484413 396 0.0533597417357182 0.961276536732251 21005 0.374230241984372 3 3 0 -7.28951465948957 LTS-013 NA NA NA NA LTS-013 chr2 234346963 234474325 127363 * c(USP40, DGKD) 0.223565036699272 4 0.0400374824383352 0.731647115998481 413 0.169345929303299 2 2 0 -6.76410779424097 LTS-013 chr2 234474326 234526272 51947 * USP40 NA 0 NA 0.893 1 NA NA NA NA NA LTS-013 chr2 234526273 242742875 8216603 * c(PP14571, LOC100286922, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NDUFA10, SEPT2, NA NA NA NA NA NA NA NA NA LTS-013 ANO7, PRLH, THAP4, ANKMY1, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, PPP1R7, HJURP, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, SPP2, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.153647777586825 243 0.0554624052251723 0.964380090259165 7565 0.667932080209129 3 3 0 -6.82236586596733 LTS-013 NA NA NA NA LTS-013 chr2 242742876 243037218 294343 * c(NEU4, RTP5, PDCD1, GAL3ST2, LOC728323) NA 0 NA 0.973891556672505 235 0.178079439212683 3 NA NA -5.7987151170926 LTS-013 chr3 239351 367757 128407 * CHL1 0.382 1 NA 0.891699741525473 13 0.103990260885212 3 3 0 -5.76504762786102 LTS-013 chr3 367758 7722039 7354282 * c(EGOT, BHLHE40-AS1, MIR4790, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, GRM7, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.33345697535294 41 0.104720865905977 0.914195647548099 1829 0.308598718074177 3 2 1 -6.87131788968267 LTS-013 chr3 7722040 7728031 5992 * GRM7 NA 0 NA 0.628 1 NA NA NA NA NA LTS-013 chr3 7728032 8299641 571610 * c(LMCD1-AS1, GRM7) 0.345 1 NA 0.775653119023136 47 0.144707322087308 2 2 0 -5.92975093553015 LTS-013 chr3 8299642 8609071 309430 * c(LMCD1-AS1, LMCD1) 0.242 1 NA 0.751012185256113 61 0.132195219112811 2 2 0 -5.81542448943242 LTS-013 chr3 8609072 15062428 6453357 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, FGD5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, LINC00312, LMCD1, HRH1, TPRXL, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, CCDC174, GHRL, PPARG, SETD5, TMEM40, EMC3, NA NA NA NA NA NA NA NA NA LTS-013 BRK1, RAD18, RAF1, RPL32, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, CAV3, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.217500056769116 176 0.0575635817297572 0.730720003434127 6693 0.212771262394992 2 2 0 -6.88255385910582 LTS-013 NA NA NA NA LTS-013 chr3 15062429 24562877 9500449 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, DPH3, LOC339862, COL6A4P1, VENTXP7, RAB5A, RPL15, SATB1, RBSN, MRPS25, THRB-AS1, BTD, MIR563, THRB, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5, NR1D2) 0.22403769554401 68 0.0725612135996346 0.696528133507816 3382 0.192539119961255 2 2 0 -6.74693851330596 LTS-013 chr3 24562878 25760800 1197923 * c(MIR4792, MIR4442, NGLY1, RARB, TOP2B) NA 0 NA 0.721655045808341 264 0.161212963852951 2 NA NA -5.78873314377705 LTS-013 chr3 25760801 25775356 14556 * NGLY1 0.384 1 NA 0.823273407408317 21 0.0949999498746735 3 3 0 -5.77211688365481 LTS-013 chr3 25775357 33255592 7480236 * c(OSBPL10-AS1, CRTAP, CMTM7, OSBPL10, LRRC3B, CCR4, TRIM71, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, GPD1L, CNOT10, SUSD5, GLB1, RBMS3, LINC00692, GADL1, ZNF860, DYNC1LI1, CMTM6, OXSM, NGLY1, AZI2, TMPPE, LINC00693, TGFBR2, EOMES, SLC4A7) 0.347655544940915 39 0.11576830716854 0.88426527034287 2632 0.895017431633097 3 2 1 -6.78775682883585 LTS-013 chr3 33255593 33429048 173456 * c(FBXL2, SUSD5) 0 1 NA 0.892446776229776 135 0.17965856998466 3 3 0 -5.76464984509674 LTS-013 chr3 33429049 35727291 2298243 * c(PDCD6IP, ARPP21, CLASP2, FBXL2, UBP1) 0.269414265318068 9 0.212203976818951 0.887081829324659 675 0.323987986396343 3 3 0 -6.87107621449134 LTS-013 chr3 35727292 35763317 36026 * ARPP21 0.163574699395707 3 0.27770547948021 0.813437558713637 53 0.62307144835345 3 3 0 -6.73372272543188 LTS-013 chr3 35763318 35778773 15456 * ARPP21 0.495 1 NA 0.757581058576808 13 0.198480897485543 2 2 0 -5.76585291781616 LTS-013 chr3 35778774 42958134 7179361 * c(ACVR2B-AS1, CCDC13-AS1, CTDSPL, EIF1B, ARPP21, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, STAC, VIPR1, NA NA NA NA NA NA NA NA NA LTS-013 DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.408396855310528 124 0.121368198908396 0.742670515153926 6311 0.232729941303251 2 1 1 -6.99774331615689 LTS-013 NA NA NA NA LTS-013 chr3 42958135 42958563 429 * ZNF662 NA 0 NA 0.823519989794077 9 0.123727523211289 3 NA NA -5.76454301095108 LTS-013 chr3 42958564 42958568 5 * ZNF662 NA 0 NA 0.617 1 NA NA NA NA NA LTS-013 chr3 42958569 42978842 20274 * c(KRBOX1, ZNF662) 0.47 1 NA 0.615753474804916 51 0.16408210283449 2 2 0 -5.77191727609591 LTS-013 chr3 42978843 46623760 3644918 * c(KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, LIMD1, CCRL2, ZNF502) 0.431259203625992 64 0.0690449301611087 0.69976030774865 4127 0.187763908326992 2 1 1 -6.75099743232304 LTS-013 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.762 1 NA NA NA NA NA LTS-013 chr3 46623907 47049868 425962 * c(LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.451016104706608 12 0.0277787525081507 0.780283855051131 868 0.195416638752981 2 1 1 -7.50418714208229 LTS-013 chr3 47049869 59033091 11983223 * c(SNORD19B, LINC00696, NRADDP, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, LSMEM2, ASB14, DAG1, DNASE1L3, NA NA NA NA NA NA NA NA NA LTS-013 DOCK3, DUSP7, CELSR3, C3orf67, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, FLNB, NBEAL2, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, ARF4, AMIGO3, RHOA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, SELENOK, QARS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.427513526631902 286 0.0872075654823866 0.716022990830318 18496 0.183703734517223 2 1 1 -6.83863978538893 LTS-013 NA NA NA NA LTS-013 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.338 1 NA NA NA NA NA LTS-013 chr3 59035205 66271320 7236116 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.36383603354089 16 0.148045024119917 0.773176842671465 1817 0.187070280339713 2 1 1 -7.8312889781825 LTS-013 chr3 66271321 66271383 63 * SLC25A26 NA 0 NA 0.628 1 NA NA NA NA NA LTS-013 chr3 66271384 74315580 8044197 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.445093803229859 60 0.0701603409792718 0.672171622195312 2518 0.196473593424858 2 1 1 -7.01913128868302 LTS-013 chr3 74315581 75263621 948041 * CNTN3 NA 0 NA 0.701631041892023 111 0.126456608012684 2 NA NA -5.76449860328762 LTS-013 chr3 75263622 75386334 122713 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-013 chr3 75386335 75679988 293654 * c(MIR1324, FAM86DP) 0.284 1 NA 1.52495413473869 3 1.14211791568705 6 6 0 -5.76444955293884 LTS-013 chr3 75679989 75790554 110566 * c(ZNF717, MIR1324) 0.323716376138918 177 0.0916610702405192 1.18953491981132 375 0.756608928435447 4 3 1 -6.73614873822084 LTS-013 chr3 75790555 75790583 29 * ZNF717 0.487 1 NA 0.706 1 NA NA NA NA NA LTS-013 chr3 75790584 84963022 9172439 * c(ZNF717, GBE1, LINC00971, ROBO1, ROBO2) 0.305222571472715 18 0.168307452873634 0.73563253880169 570 0.257723605564026 2 2 0 -7.09179339399719 LTS-013 chr3 84963023 88103776 3140754 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, HTR1F, VGLL3, POU1F1, CGGBP1) 0.422551747529508 9 0.0597775970670544 0.891160442185437 602 0.234513429869414 3 2 1 -6.99817814389358 LTS-013 chr3 88103777 90283666 2179890 * c(EPHA3, C3orf38, ZNF654, CGGBP1) NA 0 NA 0.877739741190968 465 0.209113687760037 3 NA NA -5.78340326897614 LTS-013 chr3 93591838 93846387 254550 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.403 1 NA 1.06903194187185 333 0.212594784772327 4 4 0 -5.76713395711529 LTS-013 chr3 93846388 94225007 378620 * character(0) 0.459 1 NA 1.03035669151011 17 0.194817052188789 4 4 0 -5.78978294030734 LTS-013 chr3 94225008 94225049 42 * character(0) NA 0 NA 0.879 1 NA NA NA NA NA LTS-013 chr3 94225050 98298600 4073551 * c(MTHFD2P1, CRYBG3, CPOX, GABRR3, LINC00879, OR5K1, OR5H1, GPR15, EPHA6, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2, ARL6, MINA) 0.330667974204235 13 0.229356178051206 0.950113621049841 921 0.447868484280937 3 2 1 -6.79847660387637 LTS-013 chr3 98298601 98307696 9096 * CPOX 0.487 1 NA 0.928095392970882 41 0.267412130541933 3 3 0 -5.76448133336799 LTS-013 chr3 98307697 107881161 9573465 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, ZPLD1, DCBLD2, FAM172BP, CPOX, LINC00635, LOC152225, ALCAM, ABI3BP, ZBTB11, LINC00636, PDCL3P4, DUBR, LNP1, IMPG2, TRMT10C, TMEM45A, IFT57, TBC1D23, NIT2, BBX, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, MIR548A3, CEP97, CMSS1, CCDC54, ADGRG7, CBLB, NXPE3, CD47, TOMM70) 0.451982168200858 74 0.0717224340967193 0.987902906430457 3302 0.272195124153694 4 2 2 -7.63664420705257 LTS-013 chr3 107881162 108094711 213550 * c(HHLA2, IFT57) 0 1 NA 0.972934936541136 99 0.645990016982319 3 3 0 -5.76626459070437 LTS-013 chr3 108094712 111564992 3470281 * c(PVRL3-AS1, CD96, HHLA2, DPPA2, MYH15, PLCXD2, NECTIN3, MORC1, FLJ22763, LINC01205, TRAT1, DPPA4, KIAA1524, LINC00488, ZBED2, RETNLB, PHLDB2, GUCA1C, DZIP3) 0.35503364667734 12 0.213245110782703 0.98475035164371 1370 0.730594311735637 3 2 1 -6.77404231358968 LTS-013 chr3 111564993 111602770 37778 * c(PLCXD2, PHLDB2) 0.431 1 NA 0.930611019386862 9 0.173045112936226 3 3 0 -5.76524696265354 LTS-013 chr3 111602771 111851890 249120 * c(GCSAM, TAGLN3, TMPRSS7, ABHD10, MIR567, C3orf52, PHLDB2) 0.452667595444825 12 0.0335463270807113 0.939969549193099 600 0.229445966375113 4 2 2 -7.34337675109903 LTS-013 chr3 111851891 111859734 7844 * GCSAM 0.447 1 NA 0.907191220503689 13 0.308723405373873 3 3 0 -5.76441311081167 LTS-013 chr3 111859735 111962774 103040 * SLC9C1 0.217207591848578 9 0.242993541295054 1.04820858771495 143 1.02831431332883 2 2 0 -6.74255118409051 LTS-013 chr3 111962775 111962851 77 * SLC9C1 0.453 1 NA 1.11364883238575 3 0.0528488410468952 4 4 0 -5.76441268195939 LTS-013 chr3 111962852 120044612 8081761 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, LRRC58, CD200R1, ADPRH, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, GPR156, DRD3, TIGIT, USF3, ZDHHC23, NEPRO, GAP43, ZBTB20, TUSC7, SLC9C1, GTPBP8, GSK3B, CD200R1L, LSAMP, CD200, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, TMEM39A, CFAP44, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, MIR568, UPK1B, ZNF80, QTRT2, NAA50, B4GALT4, NR1I2, MAATS1, NA NA NA NA NA NA NA NA NA LTS-013 BOC, CD80) 0.429095391023635 86 0.101337779500222 0.938600939896419 4443 0.270993713232093 3 2 1 -6.9720682651578 LTS-013 NA NA NA NA LTS-013 chr3 120044613 120044618 6 * LRRC58 NA 0 NA 1.026 1 NA NA NA NA NA LTS-013 chr3 120044619 127390471 7345853 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, MIR5002, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, POLQ, ALDH1L1, PDIA5, ADCY5, FSTL1, TXNRD3, OSBPL11, LRRC58, CCDC58, TPRA1, UROC1, CSTA, DTX3L, ROPN1B, C3orf22, PARP15, CHST13, ALG1L, HACD2, NUP210P1, FAM162A, SEC22A, GOLGB1, RABL3, ILDR1, KLF15, GTF2E1, HCLS1, HGD, CFAP100, ITGB5, KPNA1, MIR198, MCM2, MYLK, NDUFB4, ARGFX, PODXL2, FBXO40, PLXNA1, SEMA5B, WDR5B, NA NA NA NA NA NA NA NA NA LTS-013 PARP14, ROPN1, SLC41A3, EAF2, MUC13, HEG1, TXNRD3NB, CCDC14, SLC15A2, UMPS, ZNF148, ZXDC, HSPBAP1, PARP9, CHCHD6, SLC12A8, CASR, DIRC2, SNX4, KALRN, CD86, STXBP5L, IQCB1) 0.416662893269825 169 0.134529806131105 1.02292978169093 7482 0.286332642737879 4 2 2 -7.00316581037927 LTS-013 NA NA NA NA LTS-013 chr3 127390472 127391106 635 * PODXL2 NA 0 NA 0.751 1 NA NA NA NA NA LTS-013 chr3 127391107 136739406 9348300 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, MGLL, CPNE4, NUDT16, COL6A6, RPL32P3, H1FOO, NUDT16P1, DNAJB8, KBTBD12, EPHB1, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, COL6A5, ANAPC13, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NPHP3-AS1, NCK1, PODXL2, PCCB, AMOTL2, ACKR4, RAB6B, IL20RB, ACPP, MSL2, PPP2R3A, CDV3, NA NA NA NA NA NA NA NA NA LTS-013 IFT122, HMCES, ISY1, KIAA1257, SRPRB, RHO, EEFSEC, RPN1, RYK, ALG1L2, COL6A4P2, LOC653712, SLCO2A1, TMEM108, SNORA7B, SNORA58, TF, TRH, FAM86HP, CNBP, RAB7A, EFCC1, NEK11, UBA5, C3orf36, CEP63, ABTB1, SLC35G2, ACAD11, BFSP2, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.443059010540357 127 0.0983785480054546 0.969243972051702 6915 0.270168353984943 3 2 1 -7.34735867796237 LTS-013 NA NA NA NA LTS-013 chr3 136739407 136739443 37 * character(0) NA 0 NA 0.659 1 NA NA NA NA NA LTS-013 chr3 136739444 137751136 1011693 * c(CLDN18, SOX14) 0.346 1 NA 0.709691407488453 87 0.165257151805709 2 2 0 -5.76816391396727 LTS-013 chr3 137751137 137786442 35306 * c(DZIP1L, CLDN18) 0.247 1 NA 0.681294785841239 61 0.175726622631972 2 2 0 -5.76494159751442 LTS-013 chr3 137786443 138763157 976715 * c(DZIP1L, MRAS, ARMC8, NME9, PRR23B, PRR23C, FOXL2NB, A4GNT, DBR1, PIK3CB, FAIM, FOXL2, PRR23A, CEP70, ESYT3) 0.218905342705754 17 0.0713047519248109 0.656564054673608 1336 0.166517086272012 2 2 0 -6.82213198957964 LTS-013 chr3 138763158 138763320 163 * PRR23C NA 0 NA 0.9 1 NA NA NA NA NA LTS-013 chr3 138763321 140697295 1933975 * c(PISRT1, TRIM42, NMNAT3, PRR23C, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, COPB2) 0.194164720228623 9 0.0357700992450398 0.869708568598083 681 0.272244624811887 3 3 0 -7.0670963728761 LTS-013 chr3 140697296 142779285 2081990 * c(LOC100289361, LOC100507389, GRK7, U2SURP, ZBTB38, GK5, PCOLCE2, PAQR9, ATP1B3, PLS1, XRN1, ATR, SLC25A36, RASA2, TFDP2, TRPC1, SPSB4, PXYLP1, RNF7) 0.174718818615973 37 0.0640715159736303 0.77604405161115 2283 0.218481731707234 2 2 0 -7.22598497593705 LTS-013 chr3 142779286 142779294 9 * U2SURP 0.18 1 NA 2.146 1 NA NA NA NA NA LTS-013 chr3 142779295 142839546 60252 * c(U2SURP, CHST2) 0.323 1 NA 1.10300380848166 5 0.368534937285463 4 4 0 -5.76441235193782 LTS-013 chr3 142839547 152884932 10045386 * c(WWTR1-AS1, MIR548H2, MIR5186, HLTF-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, CP, CPA3, CPB1, AGTR1, AADACP1, C3orf58, WWTR1, SERP1, SLC9A9, IGSF10, GPR171, GYG1, AADACL2, PLSCR5, ANKUB1, MBNL1-AS1, TM4SF1, MBNL1, P2RY1, COMMD2, SELENOT, PFN2, PLOD2, PLSCR1, P2RY13, GPR87, SUCNR1, PLSCR2, PLSCR4, RAP2B, TMEM14EP, LOC646903, SIAH2, P2RY12, HLTF, TM4SF4, CLRN1, ZIC1, EIF2A, NA NA NA NA NA NA NA NA NA LTS-013 ZIC4, HPS3, CHST2, TSC22D2, P2RY14) 0.428166589106189 84 0.0633324550019114 1.45998095025261 3894 0.836556911826334 6 3 3 -6.75074251129968 LTS-013 NA NA NA NA LTS-013 chr3 152884933 160740016 7855084 * c(TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, KCNAB1-AS2, KCNAB1-AS1, PPM1L, PQLC2L, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, TRIM59, SCHIP1, LINC00880, GPR149, IL12A, KPNA4, LEKR1, C3orf80, MIR15B, MIR16-2, MLF1, MME, RSRC1, LXN, CCNL1, IFT80, PTX3, RAP2B, RARRES1, PA2G4P4, SHOX2, MFSD1, IQCJ, SSR3, SCARNA7, LINC00886, KCNAB1, VEPH1, ARL14, GFM1, GMPS, SLC33A1 NA NA NA NA NA NA NA NA NA LTS-013 ) 0.440281542781573 66 0.101408219783344 1.60170673298786 3504 0.419399872873909 7 4 3 -6.86633379409834 LTS-013 NA NA NA NA LTS-013 chr3 160740017 160793724 53708 * PPM1L 0 1 NA 1.62935022429913 155 0.689827990678779 7 7 0 -5.76452802991932 LTS-013 chr3 160793725 164739226 3945502 * c(LOC101243545, OTOL1, SPTSSB, NMD3, LINC01192, SI, B3GALNT1) 0.464128865226753 4 0.0187327698610394 1.65699764892895 480 1.45739334826545 6 3 3 -9.03282696394061 LTS-013 chr3 164739227 164741387 2161 * SI NA 0 NA 1.473 1 NA NA NA NA NA LTS-013 chr3 164741388 167189607 2448220 * c(SLITRK3, SERPINI2, BCHE, SI, ZBBX) 0.276547733814784 7 0.168839597025726 1.36741313329115 435 0.403898997406453 5 4 1 -6.75733198241184 LTS-013 chr3 167189608 167813512 623905 * c(PDCD10, WDR49, GOLIM4, SERPINI1, SERPINI2, LINC01330) NA 0 NA 1.33304590011843 350 0.327538334584192 5 NA NA -5.76667937347682 LTS-013 chr3 167813513 168269756 456244 * c(MIR551B, EGFEM1P) 0.441 1 NA 1.74716379820026 9 0.37364402994175 7 7 0 -5.76595655589985 LTS-013 chr3 168269757 173323411 5053655 * c(LOC100128164, LRRC34, ECT2, RPL22L1, MECOM, NLGN1, TNIK, GHSR, GPR160, LRRIQ4, SAMD7, TMEM212, CLDN11, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, FNDC3B, SKIL, SLC2A2, MIR569, TERC, SEC62, LRRC31, PHC3, SPATA16, ACTRT3, TNFSF10, EGFEM1P) 0.447817084708476 39 0.0791851040395502 1.67757230275635 2775 0.383230243130746 7 4 3 -6.847716051722 LTS-013 chr3 173323412 176742663 3419252 * c(MIR4789, NAALADL2-AS3, NLGN1, NAALADL2, TBL1XR1) 0.460126877441274 9 0.0502891638427206 1.96422993561353 442 0.485367880586079 8 4 4 -7.11429394231376 LTS-013 chr3 176742664 176742794 131 * TBL1XR1 NA 0 NA 1.666 1 NA NA NA NA NA LTS-013 chr3 176742795 182554419 5811625 * c(LINC00578, LINC01014, KCNMB2, DNAJC19, TTC14, ATP11B, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, MFN1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, FXR1, ACTL6A, USP13) 0.44312056541912 29 0.0893124807169897 1.77990994283645 2042 0.479523487304865 7 4 3 -6.83169493448778 LTS-013 chr3 182554420 182554807 388 * ATP11B NA 0 NA 2.04 1 NA NA NA NA NA LTS-013 chr3 182554808 183211906 657099 * c(LINC00888, MCF2L2, ATP11B, LAMP3, DCUN1D1, MCCC1, B3GNT5, KLHL6) 0.435212398752117 4 0.0342576025625456 2.0439848679263 934 0.530557791635946 8 4 4 -6.86712277987531 LTS-013 chr3 183211907 183638771 426865 * c(ABCC5, KLHL24, PARL, YEATS2, MAP6D1, KLHL6) 0 1 NA 2.12346729445342 457 0.547435746328996 9 9 0 -5.7645338282745 LTS-013 chr3 183638772 183906156 267385 * c(ABCC5, ABCC5-AS1, AP2M1, HTR3C, DVL3, HTR3D, HTR3E, ABCF3, EIF2B5) 0.287486643576979 3 0.254613432481478 2.18694093434832 804 0.523334395610259 9 7 2 -6.73993995166077 LTS-013 chr3 183906157 183906517 361 * ABCF3 NA 0 NA 2.735 1 NA NA NA NA NA LTS-013 chr3 183906518 184098256 191739 * c(MIR1224, ALG3, CLCN2, FAM131A, EIF4G1, POLR2H, ABCF3, PSMD2, SNORD66, THPO, CHRD, VWA5B2, CAMK2N2, ECE2) 0.412067483360755 7 0.173410330883552 2.52358747298135 1080 0.561918160544847 11 6 5 -6.73379524394886 LTS-013 chr3 184098257 184099206 950 * CHRD 0.474 1 NA 2.5519284606705 14 0.47782851882929 11 11 0 -5.76441129926119 LTS-013 chr3 184099207 185232169 1132963 * c(EHHADH, LIPH, EPHB3, VPS8, C3orf70, EHHADH-AS1, MAGEF1, CHRD, TMEM41A, MAP3K13) 0.468356776544248 26 0.0255530820058951 2.6528875077772 1182 0.752650873804405 12 6 6 -8.38912497132567 LTS-013 chr3 185232170 185318706 86537 * c(LIPH, SENP2) 0 1 NA 2.6438611072281 79 0.893129699889332 12 12 0 -5.76443593209134 LTS-013 chr3 185318707 185985658 666952 * c(IGF2BP2, DGKG, ETV5, NMRAL1P1, SENP2, TRA2B, IGF2BP2-AS1) 0.234884461037594 10 0.232923568770721 2.69619146668361 622 1.13755394824058 11 9 2 -6.73716373814421 LTS-013 chr3 185985659 185990096 4438 * DGKG 0.464 1 NA 2.94125687418289 11 1.02026291620436 13 13 0 -5.76441073133067 LTS-013 chr3 185990097 192125965 6135869 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, CLDN16, RPL39L, TMEM207, RTP1, CRYGS, CCDC50, PYDC2, DGKG, AHSG, EIF4A2, FGF12, LOC253573, UTS2B, FETUB, TPRG1, HRG, LPP-AS2, RTP2, OSTN, IL1RAP, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, P3H2, MASP1, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, ST6GAL1, SST, SNORA81, TP63, CLDN1, ADIPOQ) 0.444348246277287 93 0.0785804557876229 2.61679563191693 3035 0.997070211355761 12 6 6 -6.79667296365535 LTS-013 chr3 192125966 192126072 107 * FGF12 NA 0 NA 1.925 1 NA NA NA NA NA LTS-013 chr3 192126073 193180531 1054459 * c(MB21D2, FGF12, ATP13A5, HRASLS, ATP13A4, MGC2889) 0.400287869232758 6 0.0251826659960114 2.01311151396049 384 0.512757006281752 10 6 4 -6.77553296575761 LTS-013 chr3 193180532 193183817 3286 * ATP13A4 0.344 1 NA 2.60270101009413 13 2.12600395288727 12 12 0 -5.76441068727256 LTS-013 chr3 193183818 195395379 2211562 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, SDHAP2, ATP13A3, ATP13A4, TMEM44) 0.361406965552943 49 0.0439602092806665 1.94238215475782 1476 0.443748369586347 9 6 3 -6.78656486424128 LTS-013 chr3 195395380 195395564 185 * SDHAP2 0.124 1 NA 2.53487859741464 4 0.671990761345224 11 11 0 -5.76441018897466 LTS-013 chr3 195395565 197607887 2212323 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, MIR570, TFRC, SDHAP2, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.293175333954797 64 0.105786467876162 1.94977215032225 2973 0.448482108946095 8 6 2 -6.7384120331861 LTS-013 chr3 197607888 197770512 162625 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 2.01884805057922 329 0.455147370429248 9 NA NA -5.7651079385092 LTS-013 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.212 1 NA 0.85175111939147 13 0.172645108049239 3 3 0 -5.76485084741609 LTS-013 chr4 60336 2011172 1950837 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, TACC3, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, IDUA, LETM1, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, ABCA11P, MFSD7, TMEM175, CTBP1-AS2, TMEM129) 0.443838100798258 85 0.068484061406043 0.74419333423323 3228 0.175010967716947 2 1 1 -6.94556153863199 LTS-013 chr4 2011173 2087480 76308 * c(NAT8L, POLN, C4orf48) 0 1 NA 0.770985380386846 189 0.236135972626767 2 2 0 -5.77194245347823 LTS-013 chr4 2087481 2242921 155441 * c(POLN, HAUS3) 0.325169832033293 15 0.143180139617729 0.760484486978203 227 0.473084214211293 4 3 1 -6.79076707114488 LTS-013 chr4 2242922 2250109 7188 * c(MXD4, POLN, HAUS3) 0.472 1 NA 0.764995736735394 23 0.142426265508576 2 2 0 -5.76605737148564 LTS-013 chr4 2250110 13378084 11127975 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4800, MIR4798, HTT-AS, LINC01587, MFSD10, MXD4, MRFAP1L1, CLNK, ADD1, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, DOK7, LINC00955, GRK4, HTT, HGFAC, HMX1, NOP14-AS1, MSANTD1, FAM86EP, USP17L6P, NA NA NA NA NA NA NA NA NA LTS-013 USP17L9P, CFAP99, LRPAP1, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, ZFYVE28, RGS12, AFAP1, RNF4, S100P, DEFB131, SH3BP2, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, TNIP2, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, NOP14, FAM193A, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, KIAA0232, WDR1, HS3ST1) 0.43680871957636 256 0.0701597228004171 0.768072689936563 6825 0.226027962550964 2 1 1 -7.71266432138078 LTS-013 NA NA NA NA LTS-013 chr4 13378085 13378094 10 * RAB28 NA 0 NA 1.162 1 NA NA NA NA NA LTS-013 chr4 13378095 15003768 1625674 * c(MIR5091, LINC01085, BOD1L1, LINC01097, LINC01096, CPEB2-AS1, NKX3-2, RAB28) 0.374130112335506 6 0.174444738145542 0.948456123614476 432 0.208169949029525 3 2 1 -6.7951329551931 LTS-013 chr4 15003769 20621846 5618078 * c(SLIT2-IT1, MIR548AX, C1QTNF7, CPEB2, TAPT1, TAPT1-AS1, LCORL, FBXL5, FAM184B, FAM200B, MIR218-1, LAP3, DCAF16, CC2D2A, QDPR, NCAPG, CLRN2, BST1, MED28, FGFBP2, PROM1, LDB2, SLIT2, CD38, FGFBP1) 0.42817626822657 59 0.078109193900778 0.816264185599549 2323 0.407018508248737 3 2 1 -7.12280334640043 LTS-013 chr4 20621847 20729689 107843 * PACRGL 0 1 NA 0.816668621214125 75 0.253544219715913 3 3 0 -5.77393517704072 LTS-013 chr4 20729690 23816150 3086461 * c(LOC100505912, PPARGC1A, PACRGL, ADGRA3, KCNIP4-IT1, GBA3, KCNIP4) 0.291779894632126 10 0.236894631992088 0.806191796599446 464 0.307756281911828 3 2 1 -7.04797392566073 LTS-013 chr4 23816151 23822328 6178 * PPARGC1A 0.447 1 NA 0.869607793821348 7 0.179902619160902 3 3 0 -5.76454680225656 LTS-013 chr4 23822329 36068765 12246437 * c(MIR4275, SLC34A2, PPARGC1A, ARAP2, DHX15, SEL1L3, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, SMIM20, PCDH7, SEPSECS, LGI2, TBC1D19, PI4K2B, STIM2, SOD3, MIR573, CCKAR, CCDC149) 0.412637486793239 34 0.117464402769535 0.844478997373226 1948 0.23713094184963 3 2 1 -7.2637047813057 LTS-013 chr4 36068766 40810650 4741885 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.426665227805693 75 0.110161696062104 0.768981456354291 3086 0.204705633576286 2 1 1 -7.27449905735393 LTS-013 chr4 40810651 40810747 97 * NSUN7 0.405 1 NA 1.547 1 NA NA NA NA NA LTS-013 chr4 40810748 42116116 1305369 * c(UCHL1-AS1, SLC30A9, LIMCH1, DCAF4L1, APBB2, BEND4, TMEM33, UCHL1, NSUN7, PHOX2B) 0.404232361607313 34 0.116492427821513 0.837669307453806 1121 1.38758901856418 2 1 1 -6.75605013519929 LTS-013 chr4 42116117 42116487 371 * BEND4 0 1 NA 0.929954417998184 9 1.00083340271995 3 3 0 -5.76441036941517 LTS-013 chr4 42116488 46366929 4250442 * c(ATP8A1, GNPDA2, SHISA3, GABRA2, GABRG1, YIPF7, KCTD8, BEND4, GRXCR1, GUF1) 0.301749096726991 10 0.214371536253197 0.7996251973759 1136 0.268193825005615 3 2 1 -7.27660763956567 LTS-013 chr4 46366930 46368641 1712 * GABRA2 0.483 1 NA 0.869315139926952 37 0.335494212120517 3 3 0 -5.76442123339205 LTS-013 chr4 46368642 49063872 2695231 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.417257498644287 63 0.102930810081853 0.808745045536725 2104 0.278305579122205 3 2 1 -7.03227700412072 LTS-013 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.750776646770597 5 0.0401596812736357 2 NA NA -5.76482790903978 LTS-013 chr4 52709193 52781598 72406 * DCUN1D4 0.465 1 NA 0.965509904534485 113 0.213309963772801 3 3 0 -5.76909379968195 LTS-013 chr4 52781599 53773762 992164 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, SCFD2, DCUN1D4, LRRC66, DANCR, SGCB, USP46, RASL11B, SNORA26) NA 0 NA 0.982552285515683 591 0.247019976869159 3 NA NA -5.83829653047922 LTS-013 chr4 53773763 53786878 13116 * SCFD2 NA 0 NA 0.679 1 NA NA NA NA NA LTS-013 chr4 53786879 68906584 15119706 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, SCFD2, GSX2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.413839435410296 78 0.0657891768014754 0.85422898877441 3871 0.219570113863 3 2 1 -7.34524281922323 LTS-013 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.254670880507083 43 0.218696414730942 0 NA NA -5.76471880983758 LTS-013 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.811 1 NA NA NA NA NA LTS-013 chr4 68907461 69178954 271494 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.424110464420165 6 0.0518099089621538 0.83892579571721 225 0.182164149331276 2 1 1 -6.89362488249289 LTS-013 chr4 69178955 69363297 184343 * character(0) NA 0 NA 0.891519579411086 175 0.17510712705133 3 NA NA -5.76474685687884 LTS-013 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.595 1 NA NA NA NA NA LTS-013 chr4 69402959 69416556 13598 * UGT2B17 0.284 1 NA 1.67104737124125 15 0.431133169129689 7 7 0 -5.76442202057919 LTS-013 chr4 69416557 69512595 96039 * UGT2B17 0.43583625591063 2 0.0629325035256027 1.61414194388089 32 0.52642831723368 6 3 3 -6.77522037923338 LTS-013 chr4 69512596 69512652 57 * character(0) NA 0 NA 0.99 1 NA NA NA NA NA LTS-013 chr4 69512653 79856425 10343773 * c(FAM47E, CSN1S2BP, LINC01094, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HTN1, HTN3, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, NA NA NA NA NA NA NA NA NA LTS-013 ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, BMP2K, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, FRAS1, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.375985432752279 140 0.12622340998875 0.874089413085414 7180 0.28808780108135 3 2 1 -6.79846104427827 LTS-013 NA NA NA NA LTS-013 chr4 79856426 79860134 3709 * PAQR3 NA 0 NA 0.584 1 NA NA NA NA NA LTS-013 chr4 79860135 84390392 4530258 * c(THAP9-AS1, LINC01088, LINC00989, HPSE, HELQ, PCAT4, ANTXR2, LIN54, PAQR3, RASGEF1B, FGF5, SEC31A, C4orf22, GK2, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, NAA11, HNRNPDL) 0.358338820639299 38 0.151887320666446 0.802227480302637 2129 0.240318686112539 3 2 1 -7.31516984913777 LTS-013 chr4 84390393 84391266 874 * FAM175A NA 0 NA 0.96 1 NA NA NA NA NA LTS-013 chr4 84391267 85570364 1179098 * c(CDS1, NKX6-1, FAM175A, GPAT3) 0.324239014078517 6 0.164914119064035 0.856465364816683 300 0.245461524752413 3 2 1 -6.83518973886548 LTS-013 chr4 85570365 85571339 975 * CDS1 0.49 1 NA 0.918135114047828 23 0.19825343105455 3 3 0 -5.76441593738274 LTS-013 chr4 85571340 95500771 9929432 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, PDLIM5, C4orf36, PPM1K, TIGD2, DMP1, DSPP, MMRN1, WDFY3, NAP1L5, HPGDS, FAM13A-AS1, GPRIN3, GRID2, IBSP, SLC10A6, HSD17B13, CCSER1, WDFY3-AS2, AFF1, ATOH1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, SMARCAD1, MEPE, KLHL8, PTPN13, SNCA-AS1, SNCA, SPP1, ARHGAP24, SPARCL1, HERC3, ABCG2) 0.431519255594854 94 0.0905919556311395 0.870848270320467 4158 0.371831829085477 3 2 1 -6.95270756492542 LTS-013 chr4 95500772 98109018 2608247 * c(PDLIM5, PDHA2, BMPR1B, UNC5C) 0.426067430991536 14 0.044056968614698 0.781197594913518 668 0.250665818642686 2 1 1 -7.02927864850418 LTS-013 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.611 1 NA NA NA NA NA LTS-013 chr4 98480011 144317300 45837290 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, MGAT4D, SPATA5, BBS12, SGMS2, SYNPO2, EGF, EIF4E, ELF2, ENPEP, NA NA NA NA NA NA NA NA NA LTS-013 FABP2, FGF2, HSPA4L, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ZNF330, LINC01091, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, LINC01061, C4orf3, MAD2L1, MANBA, MGST2, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, PPP3CA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ZGRF1, AP1AR, MAML3, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, TNRC18P1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP6, C4orf17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 QRFPR, KIAA1109, COL25A1, USP38, MGARP, PRSS12, LAMTOR3, PDE5A, INPP4B, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.433381219015749 256 0.0746857779356809 0.701279137483143 16098 0.27828389370622 2 1 1 -6.75463955112917 LTS-013 NA NA NA NA LTS-013 chr4 144317301 144336628 19328 * GAB1 NA 0 NA 0.844 1 NA NA NA NA NA LTS-013 chr4 144336629 144621810 285182 * c(FREM3, GAB1, GUSBP5, SMARCA5) 0.408 1 NA 0.865056133043872 522 0.195360551245012 3 3 0 -5.77150167073675 LTS-013 chr4 144621811 144794540 172730 * c(FREM3, GYPE) NA 0 NA 0.737 1 NA NA NA NA NA LTS-013 chr4 144794541 155243881 10449341 * c(MIR3140, LINC01095, MIR4799, ANAPC10, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, GYPA, GYPB, GYPE, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, TMEM184C, ABCE1, RPS3A, SFRP2, HHIP, HHIP-AS1, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.402319130251572 56 0.157329647101692 0.736342065957012 4382 0.218021927563788 2 1 1 -7.05126465541714 LTS-013 chr4 155243882 155243886 5 * DCHS2 NA 0 NA 0.958 1 NA NA NA NA NA LTS-013 chr4 155243887 175237408 19993522 * c(MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ANXA10, KLHL2, SCRG1, CLCN3, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GRIA2, GUCY1A3, GUCY1B3, HMGB2, LOC340017, TRIM61, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, DCHS2, PPID, HPF1, MARCH1, TMEM144, TMA16, DDX60, NA NA NA NA NA NA NA NA NA LTS-013 PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, MSMO1, MIR578, TDO2, TLL1, HAND2-AS1, MAP9, CEP44, TKTL2, CBR4, SAP30, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.408634400825305 140 0.117631057871426 0.77432881019496 6199 0.375281103177906 2 1 1 -7.48994699505709 LTS-013 NA NA NA NA LTS-013 chr4 175237409 175253633 16225 * CEP44 0 1 NA 0.945792308418498 77 2.07620478599707 3 3 0 -5.76441565306191 LTS-013 chr4 175253634 176733867 1480234 * c(MIR4276, ADAM29, GPM6A, HPGD, GLRA3, CEP44) 0.320374627602184 7 0.218334932745868 0.775159722001247 500 0.281711909659652 2 1 1 -6.96634659777889 LTS-013 chr4 176733868 176891924 158057 * GPM6A NA 0 NA 0.626 1 NA NA NA NA NA LTS-013 chr4 176891925 187003543 10111619 * c(CLDN24, MIR1305, MIR3945, LINC01093, WDR17, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, GPM6A, LINC01098, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, WWC2, CASP3, SNX25, SORBS2, LOC90768) 0.258015444261162 64 0.0590923892415076 0.615015080453696 3306 0.163843003931279 2 2 0 -9.50074639730711 LTS-013 chr4 187003544 187003642 99 * TLR3 NA 0 NA 0.645 1 NA NA NA NA NA LTS-013 chr4 187003643 190945944 3942302 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3) 0.276099717854443 30 0.0805325735482162 0.67455118460225 1109 0.25232438844504 2 2 0 -7.11042589449937 LTS-013 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.918393009413319 23 0.846976785921154 3 NA NA -5.76442209520123 LTS-013 chr5 140347 140532 186 * PLEKHG4B 0.292 1 NA 1.09347196420088 3 0.209664016941391 4 4 0 -5.76441021939126 LTS-013 chr5 140533 3611233 3470701 * c(PDCD6, MIR4277, LOC100506688, MIR4457, MIR4456, MIR4635, LOC100996325, SLC12A7, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, C5orf38, IRX2, PP7080, LINC01019, SLC6A19, SLC6A18, LRRC14B, NDUFS6, IRX4, CEP72, AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, TERT, SDHAP3, LOC728613, IRX1, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.261826984992351 116 0.0873266507318126 1.26651815929511 2736 0.516551360392234 5 4 1 -6.74295609857063 LTS-013 chr5 3611234 7883385 4272152 * c(MIR4278, MIR4454, ADCY2, PAPD7, UBE2QL1, C5orf49, ADAMTS16, ICE1, LINC01018, LINC01020, FLJ33360, LOC442132, MTRR, NSUN2, SRD5A1, FASTKD3, MED10) 0.34908473660129 23 0.058655253261561 1.40158044531191 1217 0.31438858663293 6 4 2 -6.88356581531561 LTS-013 chr5 7883386 7885788 2403 * MTRR NA 0 NA 1.89 1 NA NA NA NA NA LTS-013 chr5 7885789 23521096 15635308 * c(SNORD123, LOC100130744, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4637, MIR4636, CDH12, CDH18, MARCH6, BASP1, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, FBXL7, LOC285692, LOC285696, LOC401177, LINC01194, MARCH11, MTRR, MYO10, TAS2R1, PMCHL1, FAM134B, FAM105A, ANKH, PRDM9, ANKRD33B, TRIO, GUSBP1, LOC729506, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.288249227311301 58 0.139502006221656 1.58807126643851 3272 0.609247301626678 7 5 2 -6.88266117710972 LTS-013 chr5 23521097 23976115 455019 * PRDM9 0.405 1 NA 1.48444388506628 61 0.269964301424681 6 6 0 -5.76477289112077 LTS-013 chr5 23976116 31328600 7352485 * c(CDH6, CDH9, CDH10, LOC340107, LINC01021, LSP1P3) 0.359686471083453 7 0.0422492603485552 1.49893716161295 383 0.415427773539463 6 4 2 -6.73758826030562 LTS-013 chr5 31328601 42807822 11479222 * c(CCDC152, CDH6, MIR4279, MIR3650, EGFLAM-AS2, LOC100506548, EGFLAM-AS4, GDNF-AS1, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, DAB2, UGT3A2, RANBP3L, PDZD2, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, DROSHA, LOC340113, PLCXD3, IL7R, LIFR, NPR3, OXCT1, SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRKAA1, PRLR, PTGER4, RAD1, RPL37, SNORD72, NA NA NA NA NA NA NA NA NA LTS-013 GOLPH3, SELENOP, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, C6, C7, C9, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.433510335954777 148 0.0754282301774582 1.35214085450431 8013 0.420718998860309 5 3 2 -6.87658039575151 LTS-013 NA NA NA NA LTS-013 chr5 42807823 42808210 388 * SELENOP NA 0 NA 0.725 1 NA NA NA NA NA LTS-013 chr5 42808211 43066774 258564 * c(LOC100132356, LOC153684, ANXA2R, SELENOP, LOC648987) 0.44434339346917 2 0.0537401153701776 0.919909271285222 64 0.306643557860557 4 2 2 -6.9125895423355 LTS-013 chr5 43066775 43066802 28 * LOC100132356 NA 0 NA 1.163 1 NA NA NA NA NA LTS-013 chr5 43066803 44809369 1742567 * c(LOC100132356, LOC100506639, NNT-AS1, PAIP1, MRPS30, NIM1K, FGF10, NNT, HMGCS1, C5orf34, CCL28, TMEM267, ZNF131) 0.405163760316587 23 0.101844995763441 1.35486875162178 747 0.413496662695518 5 3 2 -6.7436680228777 LTS-013 chr5 44809370 45696278 886909 * c(MRPS30, HCN1) NA 0 NA 1.44507433156717 145 0.2978764396119 6 NA NA -5.77248597595306 LTS-013 chr5 49692017 49694961 2945 * EMB 0.434 1 NA 0.925590498630841 59 0.446008429941849 3 3 0 -5.7644170183406 LTS-013 chr5 49694962 53841956 4146995 * c(FST, SNX18, EMB, LOC257396, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, ARL15, LOC642366, MIR581, PARP8, HSPB3) 0.397742181605761 25 0.079597068622741 1.01409289153357 1265 0.265822506413011 4 2 2 -7.00019020696164 LTS-013 chr5 53841957 53842347 391 * SNX18 NA 0 NA 1.04839057138459 8 0.0696387361418095 4 NA NA -5.76452081793796 LTS-013 chr5 53842348 54330003 487656 * c(ESM1, SNX18, GZMK) 0.276 1 NA 0.854539162962189 105 0.301145744654992 3 3 0 -5.77313054080031 LTS-013 chr5 54330004 55081710 751707 * c(MIR449C, MIR5687, CCNO, SLC38A9, CDC20B, SKIV2L2, GZMA, MCIDAS, RNF138P1, GPX8, DHX29, DDX4, MIR449A, MIR449B, PLPP1) 0 1 NA 0.856973209390821 806 0.258682766698252 3 3 0 -5.78066978364891 LTS-013 chr5 55081711 55082373 663 * DDX4 NA 0 NA 1.389 1 NA NA NA NA NA LTS-013 chr5 55082374 55439731 357358 * c(IL31RA, IL6ST, FLJ31104, DDX4, ANKRD55) 0.0763665826874244 3 0.103389232192397 1.31328765877378 467 0.524555122609486 6 6 0 -6.7796163551675 LTS-013 chr5 55439732 55455638 15907 * ANKRD55 NA 0 NA 0.382 1 NA NA NA NA NA LTS-013 chr5 55455639 57792891 2337253 * c(PLK2, SETD9, MIER3, GAPT, ACTBL2, MAP3K1, GPBP1, ANKRD55) 0.334357643242343 7 0.0393440259881012 0.430423423372615 750 0.101070749929551 1 1 0 -9.30326526021951 LTS-013 chr5 57792892 57825931 33040 * character(0) NA 0 NA 0.289 1 NA NA NA NA NA LTS-013 chr5 57825932 58148894 322963 * RAB3C 0.185633036286948 2 0.303348809129029 0.319497913045836 86 0.252919711175222 0 0 0 -7.08038215594181 LTS-013 chr5 58148895 58265231 116337 * PDE4D 0.478 1 NA 0.306993514820594 137 0.081672185987232 0 0 0 -5.76817196937982 LTS-013 chr5 58265232 58571915 306684 * PDE4D 0.456539304734327 16 0.0372162598873127 0.313931491724757 262 0.091198024405493 0 0 0 -7.31376382577642 LTS-013 chr5 58571916 59189368 617453 * PDE4D 0 1 NA 0.314592594350663 39 0.213940410687734 0 0 0 -5.77962977592054 LTS-013 chr5 59189369 59941512 752144 * c(PART1, PDE4D, DEPDC1B) 0.467 1 NA 0.320029313298047 100 0.0775159097387515 0 0 0 -6.02787220074259 LTS-013 chr5 59941513 59943197 1685 * DEPDC1B NA 0 NA 0.418 1 NA NA NA NA NA LTS-013 chr5 59943198 62073166 2129969 * c(LRRC70, IPO11-LRRC70, ERCC8, DIMT1, C5orf64, KIF2A, IPO11, DEPDC1B, ZSWIM6, SMIM15, ELOVL7, NDUFAF2) 0.291133995469395 28 0.104770371230757 0.474225555568906 921 0.158665247028591 1 1 0 -6.88585337299974 LTS-013 chr5 62597302 68850398 6253097 * c(FAM159B, LOC100303749, OCLN, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, CD180, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, TRAPPC13, CCNB1, MRPS36) 0.216086353878506 51 0.0817707555950673 0.651797546925982 3252 0.272536349138996 2 2 0 -6.9847983288779 LTS-013 chr5 68850399 69373289 522891 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.947950810052133 39 0.280623286898642 3 NA NA -5.77504539863375 LTS-013 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.006 1 NA NA NA NA NA LTS-013 chr5 69717474 70751602 1034129 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, PMCHL2, BDP1, LOC647859, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.346439738919064 95 0.171763622438749 0 NA NA -6.14986953697128 LTS-013 chr5 70751603 70751723 121 * BDP1 NA 0 NA 0.619 1 NA NA NA NA NA LTS-013 chr5 70751724 93855402 23103679 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, NA NA NA NA NA NA NA NA NA LTS-013 SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.224166527814029 222 0.0667276108456034 0.652578074192405 10218 0.317829083534356 2 2 0 -7.36472842480953 LTS-013 NA NA NA NA LTS-013 chr5 93855403 96369079 2513677 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.224387685950164 48 0.0612749297941384 0.602233186034946 2229 0.150939991282736 2 2 0 -7.97160676533116 LTS-013 chr5 96369080 96371042 1963 * character(0) NA 0 NA 1.0468693879928 40 0.287764856819788 4 NA NA -5.76444475168934 LTS-013 chr5 96371043 126205072 29834030 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, PAM, NA NA NA NA NA NA NA NA NA LTS-013 TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.231288051905271 147 0.0834630895493249 0.644187823073642 8355 0.197117514731781 2 2 0 -8.9515173588146 LTS-013 NA NA NA NA LTS-013 chr5 126205073 126205155 83 * MARCH3 0.189 1 NA 1.36 1 NA NA NA NA NA LTS-013 chr5 126205156 130494762 4289607 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.23822425671214 36 0.0982063425359366 0.684928472059601 1549 0.267018167966423 2 2 0 -6.78406110746261 LTS-013 chr5 130494763 134332018 3837256 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, NA NA NA NA NA NA NA NA NA LTS-013 DDX46) 0.224811363925131 47 0.0868424200517468 0.622040203957184 4471 0.213246666590838 2 2 0 -7.3815603840163 LTS-013 NA NA NA NA LTS-013 chr5 134332019 135567186 1235168 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.209924822439527 29 0.0955074211131508 0.685113638499039 925 0.590157383040115 2 2 0 -6.73591576936497 LTS-013 chr5 135567187 136311088 743902 * c(TRPC7, SPOCK1) NA 0 NA 0.673839916551814 70 0.107362820171973 2 NA NA -5.82225695605057 LTS-013 chr5 136311089 136312039 951 * SPOCK1 0.361 1 NA 0.917995881122591 19 0.163399270614733 3 3 0 -5.76441833900427 LTS-013 chr5 136312040 143539142 7227103 * c(GNPDA1, SRA1, MIR874, LINC01024, LOC100505658, MIR5197, ARHGAP26-AS1, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, DIAPH1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FGF1, ARHGAP26, HARS2, PCDHGA12, LRRTM2, PCDHB5, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, RELL2, NR3C1, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, PCDH1, PCDHGC3, MZB1, PAIP2, PCDH12, FAM13B, NA NA NA NA NA NA NA NA NA LTS-013 FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB18P, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PCDHB16, HMHB1, PURA, ECSCR, SIL1, ARAP3, SPOCK1, TAF7, SNHG4, LOC729080, UBE2D2, WNT8A, NDFIP1, YIPF5, SPRY4, SLC4A9, NME5, SLC25A2, PCDHB19P, PSD2, CYSTM1, EIF4EBP3, PCDHGB4, CDC23, HDAC3, FCHSD1, CD14, MYOT, NRG2, RNF14, PCDHGA8, PCDHA9, MATR3, KIAA0141, CDC25C, SLC23A1) 0.404305422727392 140 0.058541370285837 0.822532121413416 9317 0.189234709737607 3 2 1 -7.66935988942265 LTS-013 NA NA NA NA LTS-013 chr5 143539143 143855031 315889 * c(KCTD16, YIPF5) 0.359 1 NA 0.78486160556059 97 0.240263905322941 2 2 0 -5.8065407508793 LTS-013 chr5 143855032 146414886 2559855 * c(PPP2R2B-IT1, TCERG1, GPR151, PRELID2, SH3RF2, PLAC8L1, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, GRXCR2) 0.392886733772264 8 0.038116128944507 0.820705808994796 927 0.276544589310159 3 2 1 -6.94668019957134 LTS-013 chr5 146414887 146420197 5311 * PPP2R2B NA 0 NA 0.839 1 NA NA NA NA NA LTS-013 chr5 146420198 150036697 3616500 * c(CDX1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, HMGXB3, IL17B, NDST1, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, PDGFRB, PPP2R2B, RPS14, SPINK9, SLC6A7, SPINK1, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, FBXO38, TIGD6, SPINK7, CD74, JAKMIP2) 0.37378818923095 99 0.102924347733767 0.86714190971721 4374 0.265328374454361 3 2 1 -6.77980917711535 LTS-013 chr5 150036698 156189703 6153006 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, SYNPO, ZNF300P1, SLC36A2, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, RBM22, NMUR2, SGCD, SPARC, SAP30L, SMIM3, ZNF300, MYOZ3, CNOT8, HAND1) 0.363000949389351 57 0.117018227914118 0.824083087372785 3770 0.436756695440142 3 2 1 -6.8964169647272 LTS-013 chr5 156189704 156189707 4 * SGCD NA 0 NA 1.104 1 NA NA NA NA NA LTS-013 chr5 156189708 170739554 14549847 * c(FAM196B, C5orf52, MIR103B1, MIR3142, MIR378E, SLU7, SOX30, PWWP2A, C1QTNF2, C5orf58, LSM11, NUDCD2, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, DOCK2, EBF1, FABP6, FOXI1, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, HAVCR1, CYFIP2, MAT2B, LOC285626, LOC285627, LOC285629, TLX3, KCNIP1, HMMR, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, SPDL1, THG1L, NA NA NA NA NA NA NA NA NA LTS-013 TENM2, RARS, ZBED8, SGCD, RANBP17, SLIT3, MIR585, TTC1, CCNJL, PANK3, HAVCR2, ADAM19, CCNG1, TIMD4, PTTG1, MED7, CLINT1) 0.344654494031557 83 0.104635928998498 0.923389715849164 5664 0.335079906192577 3 2 1 -6.85928311336671 LTS-013 NA NA NA NA LTS-013 chr5 170739555 170813668 74114 * MIR3912 NA 0 NA 0.507 1 NA NA NA NA NA LTS-013 chr5 170813669 171470735 657067 * c(MIR3912, FBXW11, NPM1, STK10, FGF18) 0.177642549522511 2 0.232638131010374 0.664214405145358 290 0.343724470327917 2 2 0 -6.75806948598418 LTS-013 chr5 171470736 171472575 1840 * STK10 0.474 1 NA 0.715268597767946 33 0.133299538804358 2 2 0 -5.7644370716206 LTS-013 chr5 171472576 180582980 9110405 * c(LOC100268168, MIR1229, MIR4281, LOC100507387, MIR4634, HEIH, RGS14, CPLX2, BTNL3, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, C5orf47, OR2Y1, NKX2-5, CREBRF, BTNL9, DBN1, DRD1, DUSP1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, OR2V1, PRELID1, EFCAB9, SH3PXD2B, LOC285593, FAM153A, ARL10, OR2V2, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, NA NA NA NA NA NA NA NA NA LTS-013 HK3, HNRNPAB, HNRNPH1, HRH2, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, FLJ16171, MIR340, MSX2, RPL26L1, C5orf45, DDX41, NOP16, HMP19, UIMC1, RAB24, NEURL1B, FAM193B, TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, ERGIC1, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, BNIP1, SNCB, SNORA74B, STK10, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CPEB4, PRR7, CANX, MXD3, THOC3, PHYKPL, STC2, SQSTM1, ATP6V0E1, UNC5A, BOD1, COL23A1, UBTD2, SCGB3A1, PDLIM7, SFXN1, ADAMTS2, MAML1, GFPT2) 0.433879176051782 222 0.0990547812071519 0.662572756208078 9360 0.228424675461881 2 1 1 -7.0545625651105 LTS-013 NA NA NA NA LTS-013 chr5 180582981 180688111 105131 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.710544126964422 339 0.13291819094309 2 NA NA -5.76513001501423 LTS-013 chr6 203389 203722 334 * character(0) 0.103 1 NA 1.7662830110883 7 2.02974308719109 7 7 0 -5.76441020830353 LTS-013 chr6 203723 409283 205561 * c(IRF4, DUSP22) 0.197465761834049 9 0.174875034747038 1.34244842594204 203 0.505233776051396 7 6 1 -6.76125153728157 LTS-013 chr6 409284 485586 76303 * c(IRF4, EXOC2) 0.078 1 NA 1.49469368285397 60 0.540411020339107 6 6 0 -5.76441150801476 LTS-013 chr6 485587 656363 170777 * c(HUS1B, EXOC2) 0.090548921738386 4 0.0571277807492408 1.3854040486057 180 0.501562803331656 7 7 0 -6.75044344453106 LTS-013 chr6 656364 11779392 11123029 * c(TMEM170B, SCARNA27, TFAP2A-AS1, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, MIR5689, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GCNT2, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, C6orf52, PSMG4, LINC01011, HTATSF1P2, C6orf201, ERVFRD-1, NA NA NA NA NA NA NA NA NA LTS-013 MAK, NEDD9, NQO2, SLC35B3, NRN1, TMEM14C, SERPINB6, SERPINB9, ELOVL2, PAK1IP1, EXOC2, WRNIP1, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, ADTRP, RIPK1, PRPF4B, GCM2, FOXQ1, CDYL, LY86, EEF1E1) 0.0868853569622705 127 0.0340769547516259 1.52302350190401 5356 0.518683090468559 6 6 0 -6.83581780301243 LTS-013 NA NA NA NA LTS-013 chr6 11779393 12015733 236341 * HIVEP1 NA 0 NA 1.045 1 NA NA NA NA NA LTS-013 chr6 12015734 13365913 1350180 * c(LOC100130357, EDN1, PHACTR1, HIVEP1, TBC1D7, GFOD1) 0.100680767722645 10 0.0383718646927668 1.27849623426028 700 0.351873757553549 5 5 0 -6.83019647862866 LTS-013 chr6 13365914 13612078 246165 * c(SIRT5, GFOD1) 0.158 1 NA 1.14073525401314 105 0.186719190837756 4 4 0 -5.77005559874266 LTS-013 chr6 13612079 15246658 1634580 * c(RANBP9, RNF182, SIRT5, JARID2, NOL7, MCUR1, CD83) 0.119944428096612 4 0.0100788557551606 1.25075339113282 338 0.309243189942596 5 5 0 -6.83372172576408 LTS-013 chr6 15246659 21065525 5818867 * c(MIR4639, CAP2, MBOAT1, E2F3, KDM1B, RBM24, RNF144B, GMPR, MYLIP, ID4, JARID2, NHLRC1, STMND1, FAM8A1, CDKAL1, ATXN1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, NUP153) 0.122924437558138 52 0.0540212934945986 1.02954426042108 2203 0.409011275868277 4 4 0 -6.86400018949512 LTS-013 chr6 21065526 21108597 43072 * CDKAL1 NA 0 NA 1.652 1 NA NA NA NA NA LTS-013 chr6 21108598 30632952 9524355 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, HDGFL1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, GPLD1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, KAAG1, ZKSCAN4, NA NA NA NA NA NA NA NA NA LTS-013 GUSBP2, VN1R10P, HIST1H2APS1, CASC15, HCG11, GMNN, DCDC2, TDP2, BTN2A3P, CDKAL1, CARMIL1, ACOT13, PRL, MRS2, ZSCAN31, ZNF192P1, SLC17A1, SOX4, BTN1A1, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, ZSCAN12, KIAA0319) 0.113344793925371 246 0.0518412282046063 1.26434606152395 7883 0.738250044076435 5 5 0 -6.74259676261588 LTS-013 NA NA NA NA LTS-013 chr6 30632953 31948626 1315674 * character(0) 0.134493994389778 10 0.0980612620309932 1.35789501079825 4517 10.061486443603 4 4 0 -6.73381619634458 LTS-013 chr6 31948627 31962056 13430 * character(0) NA 0 NA 0.071 1 NA NA NA NA NA LTS-013 chr6 31962057 31980964 18908 * character(0) NA 0 NA 0.0777334487133801 109 0.156086833936013 0 NA NA -6.5161981005246 LTS-013 chr6 31980965 31994805 13841 * character(0) NA 0 NA 2.527 1 NA NA NA NA NA LTS-013 chr6 31994806 32427918 433113 * character(0) NA 0 NA 1.34007390751569 1484 0.310449022364296 5 NA NA -5.7669610294247 LTS-013 chr6 32427919 32487229 59311 * HLA-DRB5 0.047 1 NA 0.295160864845373 13 0.359991933670315 0 0 0 -5.76452373737818 LTS-013 chr6 32487230 32497890 10661 * HLA-DRB5 0.364 1 NA 0.974544136509757 17 0.55318282266726 3 3 0 -5.76454183560892 LTS-013 chr6 32497891 32498118 228 * HLA-DRB5 0.328617549875465 2 0.0537401153701776 0.570308040134027 9 0.622082546326807 16 11 5 -6.73433154184203 LTS-013 chr6 32498119 32546466 48348 * HLA-DRB5 NA 0 NA 2.39 1 NA NA NA NA NA LTS-013 chr6 32546467 32557639 11173 * HLA-DRB5 0.379375625873355 34 0.0852178345338471 2.03452568970164 98 1.49373788216486 16 10 6 -6.73391146363586 LTS-013 chr6 32557640 32605151 47512 * character(0) NA 0 NA 0.773 1 NA NA NA NA NA LTS-013 chr6 32605152 32610949 5798 * HLA-DQA1 NA 0 NA 0.453117984623046 93 0.542326155081307 1 NA NA -5.7645288772533 LTS-013 chr6 32610950 32610953 4 * HLA-DQA1 NA 0 NA 0.731 1 NA NA NA NA NA LTS-013 chr6 32610954 32628749 17796 * HLA-DQA1 NA 0 NA 0.77229172329248 57 0.407221290207173 2 NA NA -5.76502253570224 LTS-013 chr6 32628750 32629218 469 * character(0) NA 0 NA 0.784 1 NA NA NA NA NA LTS-013 chr6 32629219 32632780 3562 * character(0) NA 0 NA 0.561932596833895 40 0.482335503379663 1 NA NA -5.76453163936149 LTS-013 chr6 32632781 32727004 94224 * character(0) 0.328230100062027 11 0.0649447317479885 1.73196585784555 83 0.98842186927163 7 5 2 -6.73693868592149 LTS-013 chr6 32727005 32729417 2413 * character(0) 0.041 1 NA 2.0187873548266 2 2.01666853994403 9 9 0 -5.76441066271927 LTS-013 chr6 32729418 32826205 96788 * character(0) NA 0 NA 1.24753362852822 360 0.275789665802095 5 NA NA -5.76568030017134 LTS-013 chr6 32826206 33035512 209307 * character(0) 0 1 NA 1.10470683374129 329 1.41353855615633 4 4 0 -5.76441136757339 LTS-013 chr6 33035513 33037675 2163 * character(0) 0.0873653715382385 34 0.0358645327012963 2.55687354532931 80 6.26669454684497 7 7 0 -6.73407623366843 LTS-013 chr6 33037676 33037680 5 * character(0) NA 0 NA 1.441 1 NA NA NA NA NA LTS-013 chr6 33037681 33048723 11043 * character(0) 0.11982954465188 7 0.0288493624589126 1.50565582413239 38 7.34233683460907 13 12 1 -6.73428916690944 LTS-013 chr6 33048724 33052693 3970 * character(0) NA 0 NA 2.081 1 NA NA NA NA NA LTS-013 chr6 33052694 33054760 2067 * character(0) 0.0724916844660929 36 0.0286134611455895 3.51072625224248 78 28.3332520058286 9 9 0 -6.73321959253004 LTS-013 chr6 33054761 33153409 98649 * character(0) 0.106036161993724 17 0.0541669532420775 1.25999631875185 323 0.946466732035272 6 6 0 -6.74090997660673 LTS-013 chr6 33153410 33153528 119 * character(0) 0.15 1 NA 1.73823841519095 3 0.643927273326214 7 7 0 -5.7644102247059 LTS-013 chr6 33153529 39272494 6118966 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-013 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, KCNK5, KCNK17, RNF8) 0.122810370095229 175 0.0601744852071934 1.15264576977815 7839 0.687346064161682 4 4 0 -6.78395990227066 LTS-013 NA NA NA NA LTS-013 chr6 39272495 39278664 6170 * KCNK17 NA 0 NA 1.524 1 NA NA NA NA NA LTS-013 chr6 39278665 41709616 2430952 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, PGC, TREM2, TREM1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, KCNK17, NCR2) 0.110546564090412 43 0.045834528324299 1.2872142390938 1585 0.556593902377014 5 5 0 -6.74226940591246 LTS-013 chr6 41709617 41709685 69 * PGC NA 0 NA 1.04 1 NA NA NA NA NA LTS-013 chr6 41709686 51613306 9903621 * c(LINC01512, TOMM6, ANKRD66, MIR4647, MIR4642, RCAN2, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, CAPN11, KLHDC3, TAF8, C6orf141, CRISP1, PTCRA, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, ADGRF2, ENPP4, CUL9, UBR2, GLTSCR1L, CD2AP, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, USP49, ADGRF1, GNMT, TNFRSF21, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, GLYATL3, NA NA NA NA NA NA NA NA NA LTS-013 CRIP3, MEA1, MEP1A, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MUT, NFKBIE, MRPL2, CYP39A1, PEX6, PGC, PGK2, PKHD1, CLIC5, POLH, GTPBP2, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, ENPP5, PRPH2, RHAG, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, TFAP2B, BYSL, CRISP2, VEGFA, PLA2G7, TFAP2D, TTBK1, SUPT3H, RUNX2, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, SLC25A27, POLR1C, MAD2L1BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CUL7, CDC5L) 0.124761352535673 143 0.0508143367434259 1.1993926210167 8503 0.378548959112602 5 5 0 -7.00556629712033 LTS-013 NA NA NA NA LTS-013 chr6 51613307 55444126 3830820 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, GSTA5, FAM83B, ICK, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, HMGCLL1, LRRC1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, MLIP, TRAM2) 0.133475073621541 63 0.0623416375683666 1.14058951079751 2413 0.460028854325625 4 4 0 -6.74946518146493 LTS-013 chr6 55444127 55618442 174316 * character(0) NA 0 NA 0.682 1 NA NA NA NA NA LTS-013 chr6 55618443 56476230 857788 * c(BMP5, DST, COL21A1) 0.202758672274489 6 0.118721101746909 0.771960039295715 802 0.167480681719213 2 2 0 -6.90781730415905 LTS-013 chr6 56476231 56515864 39634 * DST NA 0 NA 0.755175229600712 256 0.139405208631627 2 NA NA -5.77130701630279 LTS-013 chr6 56515865 57244780 728916 * c(BEND6, ZNF451, RAB23, PRIM2, KIAA1586, DST, BAG2) 0.455 1 NA 0.884434475433992 632 0.184803859263067 3 3 0 -5.76839266855991 LTS-013 chr6 57244781 57512678 267898 * PRIM2 0.335324648994638 41 0.0663059151979965 1.16619323732546 99 0.605721880312594 4 3 1 -6.77563827906047 LTS-013 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.901721282338024 19 0.133284771858441 3 NA NA -5.76450293477024 LTS-013 chr6 62390154 62407067 16914 * KHDRBS2 0.155 1 NA 0.90475482130956 25 0.229002852966217 3 3 0 -5.76441511779113 LTS-013 chr6 62407068 67419959 5012892 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, PTP4A1) 0.189052464193386 18 0.0603570260055554 0.78234628954917 901 0.312509909091385 2 2 0 -7.197687447653 LTS-013 chr6 67419960 67420479 520 * character(0) NA 0 NA 1.194 1 NA NA NA NA NA LTS-013 chr6 67420480 70897910 3477431 * c(COL19A1, LMBRD1, ADGRB3) 0.101815741817767 5 0.052997169735751 1.32113453083835 482 0.375279411840068 5 5 0 -6.78038973338466 LTS-013 chr6 70897911 70899970 2060 * COL19A1 NA 0 NA 1.726 1 NA NA NA NA NA LTS-013 chr6 70899971 73905240 3005270 * c(MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, KCNQ5, FAM135A, SMAP1, OGFRL1, LINC00472) 0.0763729707606855 23 0.0427575664200619 1.60583105141534 1222 0.608553424019813 7 7 0 -6.79914113540435 LTS-013 chr6 73905241 73905292 52 * KCNQ5 NA 0 NA 1.085 1 NA NA NA NA NA LTS-013 chr6 73905293 75796286 1890994 * c(KHDC1L, MB21D1, COL12A1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KCNQ5, KHDC1) 0.0985000567079319 35 0.028124483188529 1.42943451261197 975 0.599792087176657 6 6 0 -6.74373300411566 LTS-013 chr6 75796287 75796874 588 * COL12A1 NA 0 NA 1.153 1 NA NA NA NA NA LTS-013 chr6 75796875 83077718 7280844 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, LCA5, IBTK, SENP6, FILIP1, HTR1B, IMPG1, MYO6, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, HMGN3) 0.108301834705842 31 0.0447896397390846 1.27307374392523 2434 0.371724268925491 5 5 0 -6.7644839436326 LTS-013 chr6 83077719 83077725 7 * character(0) NA 0 NA 0.963 1 NA NA NA NA NA LTS-013 chr6 83077726 90637838 7560113 * c(SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, RWDD2A, CNR1, RIPPLY2, PM20D2, SRSF12, CFAP206, PRSS35, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, UBE2J1, PGM3, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, SNORD50B, SPACA1, GJA10, RNGTT, UBE3D, TBX18, SNAP91, CASP8AP2) 0.127928145131306 77 0.0503153690599241 1.01835800236876 4626 0.449654830271897 4 4 0 -6.88313306126072 LTS-013 chr6 90637839 90637841 3 * BACH2 NA 0 NA 0.411 1 NA NA NA NA NA LTS-013 chr6 90637842 96652666 6014825 * c(MIR4464, MIR4643, FUT9, EPHA7, BACH2, TSG1, MAP3K7, MANEA) 0.123576744751565 16 0.0634979986561256 0.964561549393024 663 0.419232799406649 4 4 0 -7.09461138802519 LTS-013 chr6 96652667 97058574 405908 * c(FUT9, UFL1, FHL5) 0.195 1 NA 0.962946732112521 157 0.270686862464775 3 3 0 -5.77947569141508 LTS-013 chr6 97058575 102513866 5455292 * c(TSTD3, MIR2113, ASCC3, KLHL32, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, PRDM13, SIM1, MCHR2-AS1, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.162791222141174 39 0.0461068260261735 0.95559786817372 1857 0.259828110025581 3 3 0 -6.90762042816715 LTS-013 chr6 102513867 102516194 2328 * GRIK2 NA 0 NA 1.451 1 NA NA NA NA NA LTS-013 chr6 102516195 107655611 5139417 * c(LIN28B-AS1, LOC100422737, BVES, BVES-AS1, AIM1, GRIK2, LIN28B, C6orf203, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, RTN4IP1, ATG5) 0.0879862724551324 17 0.0591258627595304 1.25091461363528 1515 0.346573242591256 5 5 0 -6.9027770097156 LTS-013 chr6 107655612 107780137 124526 * PDSS2 NA 0 NA 0.874 1 NA NA NA NA NA LTS-013 chr6 107780138 112672543 4892406 * c(LOC100996634, TRAF3IP2, SEC63, GTF3C6, SLC16A10, CCDC162P, AK9, FOXO3, CDK19, LACE1, FYN, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, LINC00222, LAMA4, GSTM2P1, RFPL4B, TUBE1, CDC40, SOBP, PDSS2, REV3L, FAM229B, TRAF3IP2-AS1, MICAL1, SMPD2, NR2E1, METTL24, ARMC2, RPF2, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ZBTB24, FIG4) 0.187810307137879 55 0.0385601807839064 0.768822499205861 4064 0.219995331962556 2 2 0 -7.50526377423708 LTS-013 chr6 113543709 121642922 8099214 * c(TRAPPC3L, LOC100287632, NUS1, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, BRD7P3, FRK, VGLL2, FAM26E, MCM9, ASF1A, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, RSPH4A, KPNA5, CEP85L, MARCKS, MAN1A1, FAM26F, RWDD1, PLN, GOPC, ROS1, MIR548B, TSPYL1, TPI1P3, FAM184A) 0.138771060009307 42 0.0710732760544052 0.934793557928686 3393 0.279829542320061 3 3 0 -6.91676798141976 LTS-013 chr6 121642923 121655376 12454 * TBC1D32 NA 0 NA 1.174 1 NA NA NA NA NA LTS-013 chr6 121655377 127768916 6113540 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, SOGA3, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.137587894706628 53 0.0637234135916131 1.04252012759258 2076 0.383336650874296 4 4 0 -6.80369470858113 LTS-013 chr6 127768917 127770959 2043 * c(SOGA3, KIAA0408) NA 0 NA 0.792 1 NA NA NA NA NA LTS-013 chr6 127770960 128313919 542960 * c(C6orf58, SOGA3, THEMIS, PTPRK, KIAA0408) 0.153075538798938 6 0.0236445906428229 0.91701951224754 317 0.264108376120373 3 3 0 -6.95077206023708 LTS-013 chr6 128313920 128316359 2440 * PTPRK NA 0 NA 0.448 1 NA NA NA NA NA LTS-013 chr6 128316360 128730572 414213 * PTPRK 0.329841723773426 2 0.0721248916810279 0.4645429680406 161 0.126203272516163 1 1 0 -6.91796780362902 LTS-013 chr6 128730573 128793792 63220 * PTPRK NA 0 NA 0.888 1 NA NA NA NA NA LTS-013 chr6 128793793 130105460 1311668 * c(LAMA2, PTPRK, ARHGAP18) 0.117 1 NA 0.905007551562443 511 0.220160877478066 3 3 0 -5.76487551709458 LTS-013 chr6 130105461 142487474 12382014 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, MIR4465, CITED2, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, TAAR1, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, HEBP2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, TAAR6, SLC35D3, IFNGR1, ECT2L, ARG1, HMGA1P7, MAP3K5, FLJ46906, MYB, NMBR, VTA1, ENPP1, ENPP3, HECA, PEX7, IL20RA, NA NA NA NA NA NA NA NA NA LTS-013 AHI1, VNN3, ARFGEF3, NHSL1, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, OR2A4, TAAR8, STX7, L3MBTL3, REPS1, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, BCLAF1) 0.189207404511411 64 0.0836012582854156 0.708927989392056 5726 0.231771894700436 2 2 0 -6.81009418273667 LTS-013 NA NA NA NA LTS-013 chr6 142487475 142691549 204075 * c(VTA1, ADGRG6) 0.244 1 NA 0.792553673016262 123 0.235758095615274 2 2 0 -5.79778552877554 LTS-013 chr6 142691550 149771788 7080239 * c(UST-AS1, LINC01277, LOC100507557, UST, RAB32, ADAT2, STXBP5, LOC153910, ZC2HC1B, TAB2, SASH1, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, ZC3H12D, SUMO4, SAMD5, AIG1, PLAGL1, HYMAI, ADGRG6, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, PEX3, STX11, PHACTR2) 0.211884735093191 43 0.094934377288423 0.711281563558432 3131 0.200537912250103 2 2 0 -6.75819092718411 LTS-013 chr6 149771789 149771791 3 * ZC3H12D NA 0 NA 0.583 1 NA NA NA NA NA LTS-013 chr6 149771792 150210723 438932 * c(RAET1E-AS1, KATNA1, GINM1, RAET1E, ZC3H12D, NUP43, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.261392715244401 33 0.0632263400471479 0.648329466571131 760 0.178795530390079 2 2 0 -7.08625293605582 LTS-013 chr6 150210724 150210801 78 * c(RAET1E-AS1, RAET1E) NA 0 NA 0.961 1 NA NA NA NA NA LTS-013 chr6 150210802 153309782 3098981 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, AKAP12) 0.223990966499332 49 0.0503625799158692 0.749824340576737 2607 0.203869650084226 2 2 0 -6.95132594981299 LTS-013 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.161 1 NA NA NA NA NA LTS-013 chr6 153309882 153603904 294023 * c(RGS17, MTRF1L) 0.202363008725464 5 0.0385940409908058 0.564527883091747 127 0.220343406352243 2 2 0 -6.96340833435612 LTS-013 chr6 154331611 167794761 13463151 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, UNC93A, AGPAT4, NA NA NA NA NA NA NA NA NA LTS-013 TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.224660806886801 178 0.0720450681367128 0.718092990161656 6823 0.574375732105534 2 2 0 -6.75833176542109 LTS-013 NA NA NA NA LTS-013 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.057 1 NA NA NA NA NA LTS-013 chr6 167796265 169115483 1319219 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, FRMD1) 0.19714025619763 28 0.0304598573544413 0.793855437742918 830 0.216687593826717 2 2 0 -7.18971906982038 LTS-013 chr6 169615866 170890384 1274519 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.215358123808172 25 0.0369493797873072 0.703471057180021 923 0.17108255249438 2 2 0 -6.73350004342152 LTS-013 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.741051963672715 45 0.128331865398924 2 NA NA -5.76478046898565 LTS-013 chr7 193047 227931 34885 * FAM20C 0.361 1 NA 0.667052891365275 37 0.161251268123607 2 2 0 -5.7663391561861 LTS-013 chr7 227932 5926027 5698096 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-013 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.338310332717539 175 0.0979410740708299 0.697681462306829 5371 0.210315281390525 2 1 1 -7.11901434641693 LTS-013 NA NA NA NA LTS-013 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.407 1 NA NA NA NA NA LTS-013 chr7 5937950 6018360 80411 * c(RSPH10B, CCZ1, PMS2) 0.377218378411596 6 0.0433389739918548 0.44901730853455 135 0.253277211205164 3 2 1 -7.08434303563957 LTS-013 chr7 6018361 6022539 4179 * PMS2 NA 0 NA 0.902 1 NA NA NA NA NA LTS-013 chr7 6022540 6836393 813854 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.35307290007901 29 0.0504866221367436 0.671772838680925 1333 0.173156488064355 2 1 1 -7.64920217114283 LTS-013 chr7 6836394 6837984 1591 * RSPH10B2 NA 0 NA 1.359 1 NA NA NA NA NA LTS-013 chr7 6837985 6863802 25818 * c(CCZ1B, RSPH10B2) 0.205 1 NA 1.11036930975165 58 0.348458749786083 4 4 0 -5.76442174930573 LTS-013 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.852 1 NA NA NA NA NA LTS-013 chr7 6864270 12272294 5408025 * c(LOC100131257, GLCCI1, PER4, CCZ1B, THSD7A, NXPH1, ICA1, COL28A1, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, PHF14) 0.365717650078784 23 0.058340488926828 0.673516697787405 1183 0.223229070401229 2 1 1 -7.30002313266929 LTS-013 chr7 12272295 17920613 5648319 * c(ISPD-AS1, LRRC72, ARL4A, AGR2, AGR3, DGKB, AHR, ETV1, VWDE, SNX13, SOSTDC1, TSPAN13, BZW2, AGMO, MEOX2, TMEM106B, ANKMY2, ISPD, SCIN) 0.333663128187936 52 0.0528527936620988 0.736877002703581 1790 0.227794844329931 2 1 1 -8.16224165435349 LTS-013 chr7 17920614 18833115 912502 * c(PRPS1L1, SNX13, HDAC9) 0 1 NA 0.73422780603174 275 0.333574143398428 2 2 0 -5.77525444694052 LTS-013 chr7 18833116 30544360 11711245 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, EVX1, TWISTNB, SP8, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, TMEM196, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, NA NA NA NA NA NA NA NA NA LTS-013 HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ABCB5, FAM221A, MACC1, IL6, ITGB8, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, CDCA7L, KLHL7, STK31, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, GGCT, FAM126A, PLEKHA8, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.304050318214174 160 0.100714489778074 0.743318747729203 6322 0.287803929113604 2 2 0 -7.45133222938023 LTS-013 NA NA NA NA LTS-013 chr7 30544361 30544412 52 * GGCT NA 0 NA 0.837 1 NA NA NA NA NA LTS-013 chr7 30544413 32110079 1565667 * c(INMT-FAM188B, PPP1R17, INMT, ADCYAP1R1, CRHR2, CCDC129, GARS, GHRHR, AQP1, LOC401320, PDE1C, NEUROD6, GGCT, FAM188B) 0.316874867429412 24 0.10832511953254 0.80641066779162 1272 0.248552024355002 3 2 1 -7.12220399380464 LTS-013 chr7 32110080 32249171 139092 * PDE1C NA 0 NA 0.786609622812938 15 0.111078136376842 2 NA NA -5.85392103516512 LTS-013 chr7 32249172 32338178 89007 * PDE1C NA 0 NA 1.332 1 NA NA NA NA NA LTS-013 chr7 32338179 32526687 188509 * c(LOC100130673, LSM5, PDE1C) 0.223 1 NA 1.09859392859558 46 0.191231326643558 4 4 0 -5.76441401325789 LTS-013 chr7 32526688 34989515 2462828 * c(DPY19L1P1, MIR550B2, FKBP9, BMPER, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, RP9, MIR550A2) 0.205071384461048 23 0.0524862865582987 1.11226282213451 1045 0.826484127417357 6 5 1 -7.09479181720711 LTS-013 chr7 34989516 34994303 4788 * DPY19L1 NA 0 NA 0.807 1 NA NA NA NA NA LTS-013 chr7 34994304 40174633 5180330 * c(MIR1200, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, MPLKIP, DPY19L1, KIAA0895, VPS41, AMPH, AOAH, FAM183BP, LINC00265, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, HERPUD2, SFRP4, LOC646999, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.219349372433121 65 0.0647620348186046 1.0108455773503 2423 0.371527440437538 3 3 0 -7.38297930157372 LTS-013 chr7 40174634 45144063 4969430 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, YKT6, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, BLVRA, MRPS24, MRPL32, SNORA5C, SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, POLR2J4, TBRG4, STK17A, H2AFV) 0.224914302473682 81 0.0576219667260908 1.0786306417244 3507 0.708218627541807 5 4 1 -7.27359640319838 LTS-013 chr7 45144064 51138500 5994437 * c(DDC-AS1, C7orf72, RAMP3, IKZF1, ADCY1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, COBL, SUN3, GRB10, HUS1, IGFBP1, IGFBP3, VWC2, C7orf65, FIGNL1, SEPT7P2, TNS3, SNORA5B, SNORA5C, UPP1, C7orf69, LINC00525, TBRG4) 0.248318536659241 68 0.0785682724871525 0.933310989046162 2795 0.314465237151567 3 3 0 -7.35572027683277 LTS-013 chr7 51138501 51138592 92 * COBL 0.222 1 NA 2.598 1 NA NA NA NA NA LTS-013 chr7 51138593 51153053 14461 * COBL 0 1 NA 1.02921969931784 69 0.50766010329492 4 4 0 -5.7645583334905 LTS-013 chr7 51153054 55087073 3934020 * c(EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, HPVC1, LINC01446) 0.227547056411127 4 0.00842614977317637 1.08743973507741 341 0.310469032399934 6 5 1 -8.88114400269233 LTS-013 chr7 55087074 55209932 122859 * EGFR NA 0 NA 1.156 1 NA NA NA NA NA LTS-013 chr7 55209933 57245247 2035315 * c(LOC100130849, EGFR-AS1, EGFR, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.146481669317793 36 0.0813168406385084 1.24443372215807 1164 0.422184882739254 5 5 0 -6.82840734280555 LTS-013 chr7 57245248 57533232 287985 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 1.27230737825307 95 0.519951030728955 5 NA NA -5.76469542607782 LTS-013 chr7 62758725 63023528 264804 * ZNF733P 0.4 1 NA 1.43092281591006 7 1.35244725273431 6 6 0 -5.76459844566664 LTS-013 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.212939536440718 20 0.032676403847747 1.16966144708283 609 0.308288281624706 6 5 1 -7.5393791388684 LTS-013 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.8 1 NA NA NA NA NA LTS-013 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) 0.175241552136431 3 0.0609617366331811 0.74297146236196 94 0.296557002845754 3 3 0 -6.86921822558067 LTS-013 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.985 1 NA NA NA NA NA LTS-013 chr7 65159973 71142386 5982414 * c(MIR3914-1, MIR3914-2, MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, TPST1) 0.215970903760994 17 0.0695314676962884 1.14289384129021 1181 0.596742589994174 5 4 1 -7.23231019671703 LTS-013 chr7 71142387 71142405 19 * WBSCR17 NA 0 NA 1.293 1 NA NA NA NA NA LTS-013 chr7 71142406 71488825 346420 * c(WBSCR17, CALN1) 0.345641068416464 6 0.0785020169592264 1.42683711802037 215 0.422365207989247 6 4 2 -6.76632256425937 LTS-013 chr7 71488826 79848697 8359872 * c(POM121C, PMS2P9, LOC100133091, MIR548M, MIR4284, APTR, MAGI2-AS3, MIR4651, MIR4650-1, MIR548AU, MAGI2-AS2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, TBL2, GNAI1, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, NA NA NA NA NA NA NA NA NA LTS-013 SPDYE5, MLXIPL, STYXL1, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1B, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.24646957441393 80 0.0679803478210682 0.962834627022321 4637 0.423719649489592 3 3 0 -7.57330546018687 LTS-013 NA NA NA NA LTS-013 chr7 79848698 80087915 239218 * c(GNAI1, CD36) NA 0 NA 1.016 1 NA NA NA NA NA LTS-013 chr7 80087916 86507796 6419881 * c(SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GRM3, HGF, GNAT3, CACNA2D1, CD36, SEMA3E) 0.249794828873499 27 0.0618191001196324 1.05228500050436 1848 0.311303268784605 4 3 1 -7.46178381155338 LTS-013 chr7 86507797 86507895 99 * KIAA1324L NA 0 NA 1.046 1 NA NA NA NA NA LTS-013 chr7 86507896 96746074 10238179 * c(LOC100506136, MIR4652, LOC101409256, AKAP9, SLC25A13, CDK6, BET1, DBF4, TP53TG1, COL1A2, RUNDC3B, CYP51A1, DLX5, DLX6, DYNC1I1, SAMD9L, C7orf62, ZNF804B, KIAA1324L, PEG10, HEPACAM2, FAM133B, STEAP2, STEAP1, GNG11, GNGT1, DLX6-AS1, LRRD1, C7orf76, DPY19L2P4, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, PPP1R9A, VPS50, SLC25A40, SDHAF3, MIR489, GATAD1, CASD1, NA NA NA NA NA NA NA NA NA LTS-013 SRI, MIR591, MIR653, TMEM243, STEAP4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, GTPBP10, KRIT1, SGCE, CLDN12, DMTF1) 0.247030146465337 104 0.0605270964632646 0.943682880796921 6588 0.238978047023109 3 3 0 -7.85291578383193 LTS-013 NA NA NA NA LTS-013 chr7 96746075 96746462 388 * SDHAF3 0.33 1 NA 1.00702090376735 9 0.126983266614149 4 4 0 -5.76452204002321 LTS-013 chr7 96746463 96810862 64400 * SDHAF3 0.292 1 NA 0.921377200630691 33 0.102142706914187 3 3 0 -5.76641665152101 LTS-013 chr7 96810863 98258972 1448110 * c(BHLHA15, LMTK2, BRI3, TECPR1, MGC72080, ASNS, NPTX2, OCM2, BAIAP2L1, SDHAF3, TAC1) 0.307240185061687 25 0.102419773481491 1.06741612922408 739 0.323400718059784 4 3 1 -6.74695732440503 LTS-013 chr7 98258973 100417270 2158298 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, TMEM130, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, NPTX2, PCOLCE, ACTL6B, PMS2P1, NA NA NA NA NA NA NA NA NA LTS-013 ZCWPW1, C7orf43, MEPCE, AZGP1, SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.259707224515971 111 0.0407950832900096 1.20892915157386 5070 1.85455748189291 5 4 1 -6.77024774154051 LTS-013 NA NA NA NA LTS-013 chr7 100417271 100549499 132229 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6) 0.391 1 NA 1.04058867160644 391 0.283584322587789 4 4 0 -5.76743253669643 LTS-013 chr7 100549500 100549573 74 * character(0) 0.261 1 NA 3.729 1 NA NA NA NA NA LTS-013 chr7 100549574 100549593 20 * character(0) 0.291629496527866 3 0.00642910050732864 4.00120451603055 3 0.0254820198048216 8 6 2 -6.80198006589781 LTS-013 chr7 100549594 100549650 57 * character(0) 0.374 1 NA 1.8530064289343 3 1.88450179092512 8 8 0 -5.76441014019899 LTS-013 chr7 100549651 100550191 541 * character(0) 0.436108091177663 20 0.0339347671430442 2.56061205279431 30 1.63932946623019 19 10 9 -6.87404501485758 LTS-013 chr7 100550192 100550203 12 * character(0) 0.09 1 NA 1.56326123258138 3 0.987432191764748 6 6 0 -5.76441014653136 LTS-013 chr7 100550204 100550504 301 * character(0) 0.244320788695156 12 0.107927971210882 2.09768744866325 19 0.802346252419696 18 14 4 -6.73314698150582 LTS-013 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.125 1 NA NA NA NA NA LTS-013 chr7 100550727 100551035 309 * character(0) 0.264716830652627 8 0.105856287349541 0.559669695362179 40 0.286374820507168 5 4 1 -6.73591791439635 LTS-013 chr7 100551036 100551065 30 * character(0) 0.297 1 NA 1.588 1 NA NA NA NA NA LTS-013 chr7 100551066 100551400 335 * character(0) 0.266110945023027 16 0.0670847411860551 2.2291274115427 24 1.08865081704341 20 15 5 -6.73341008602369 LTS-013 chr7 100551401 100551433 33 * character(0) 0.337 1 NA 3.489 1 NA NA NA NA NA LTS-013 chr7 100551434 100552788 1355 * character(0) 0.369279356725724 41 0.046537081988453 2.13514760288336 70 1.19929872849329 14 9 5 -6.73443987968767 LTS-013 chr7 100552789 100552794 6 * character(0) NA 0 NA 1.081 1 NA NA NA NA NA LTS-013 chr7 100552795 100610772 57978 * character(0) 0.430921649708088 18 0.0432386975673442 1.236273788799 81 0.748814496387456 4 2 2 -6.77678204719141 LTS-013 chr7 100610773 100612875 2103 * character(0) 0.263 1 NA 1.38446899813491 11 0.778300619648638 5 5 0 -5.7644184920834 LTS-013 chr7 100612876 139605871 38992996 * c(LOC100129148, RPL19P12, LOC100130705, EFCAB10, LOC100130880, KMT2E-AS1, LINC01004, RASA4B, SMKR1, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4653, MIR4468, MIR4467, LOC100630923, MUC12, MIR5090, RNA5SP244, C7orf55-LUC7L2, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, CHRM2, TSGA13, AP1S1, CPA1, CPA2, COL26A1, KLF14, SSMEM1, SVOPL, LRGUK, ASZ1, MUC17, ASB15, CUX1, BMT2, CLEC2L, NA NA NA NA NA NA NA NA NA LTS-013 FMC1, FEZF1-AS1, IQUB, C7orf77, C7orf66, TMEM213, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLDN15, POLR2J2, UBN2, POT1, HYALP1, TES, SLC13A4, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, MOGAT3, FAM71F2, STRA8, KLRG2, IFRD1, DPY19L2P2, LOC349160, IMPDH1, IRF5, KCND2, NAT16, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, AKR1B15, EIF3IP1, LMOD2, MIR335, NDUFA5, CNOT4, NRCAM, NRF1, ORC5, SERPINE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ATP6V0A4, PNPLA8, PAX4, TAS2R16, FIS1, CPA4, WNT16, ZC3HC1, LUC7L2, LSM8, SLC26A4, PIK3CG, PODXL, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, CHCHD3, PPP1R3A, RBM28, TMEM140, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, ZC3HAV1, PSMC2, AKR1B10, MIR490, STRIP2, PTN, KIAA1549, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, C7orf73, CCDC136, CREB3L2, IFT22, SLC13A1, SMO, SPAM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 BPGM, AKR1D1, SRPK2, SYPL1, TBXAS1, MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, UBE2H, VGF, WNT2, LUZP6, C7orf49, GCC1, PRKRIP1, ST7, CBLL1, CPED1, TTC26, CALD1, ORAI2, CALU, TRIM56, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, WASL, PLOD3, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, MYL10, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, CEP41, DOCK4) 0.324936305672106 389 0.0892241970825714 0.99531953891355 21525 0.286669672175264 4 3 1 -8.7340493268518 LTS-013 NA NA NA NA LTS-013 chr7 139605872 139611015 5144 * TBXAS1 NA 0 NA 0.798 1 NA NA NA NA NA LTS-013 chr7 139611016 141359668 1748653 * c(JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MKRN1, DENND2A, RAB19, NDUFB2, MRPS33, AGK, KIAA1147, PARP12, BRAF, TBXAS1, KDM7A, SLC37A3, ADCK2) 0.390699143831079 20 0.042788187007262 0.800497520490013 1322 0.18633348417398 3 2 1 -7.1463557214728 LTS-013 chr7 141359669 141705515 345847 * c(OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, KIAA1147, TAS2R38, SSBP1, MGAM) 0.325 1 NA 0.813600074264805 489 0.172330236097904 3 3 0 -5.83502036449889 LTS-013 chr7 141705516 142045838 340323 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.248838665306538 20 0.132350600976903 0.85668899907569 730 0.40717062748266 2 2 0 -6.82100085156248 LTS-013 chr7 142045839 142045877 39 * character(0) 0.449 1 NA 1.685 1 NA NA NA NA NA LTS-013 chr7 142045878 142482376 436499 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.294104622648596 63 0.134667503153248 1.31593289204049 384 1.61591495346474 8 6 2 -6.74714163839095 LTS-013 chr7 142482377 142494606 12230 * PRSS3P2 0.415 1 NA 1.55839786332055 11 1.56085979220079 6 6 0 -5.76441466326333 LTS-013 chr7 142494607 142498837 4231 * character(0) 0.355477404141782 4 0.0456900791565667 1.13263671477822 20 0.272165874344846 9 6 3 -6.74617586228746 LTS-013 chr7 142498838 142498882 45 * character(0) NA 0 NA 1.004 1 NA NA NA NA NA LTS-013 chr7 142498883 143305591 806709 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.45175665895157 17 0.115230268184546 0.986231832315973 1333 0.25908462790599 4 2 2 -6.86470034145372 LTS-013 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.131617051163864 39 0.236947801126829 0 NA NA -5.87650957298129 LTS-013 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.05 1 NA NA NA NA NA LTS-013 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.397471969766607 9 0.152908469353401 1.07437101048477 282 0.438999284205308 4 2 2 -6.74600227501225 LTS-013 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.392 1 NA NA NA NA NA LTS-013 chr7 143883365 143979934 96570 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.395563190666551 69 0.280214644923006 1 NA NA -5.80524642981441 LTS-013 chr7 143979935 143980245 311 * ARHGEF34P NA 0 NA 0.791 1 NA NA NA NA NA LTS-013 chr7 143980246 144072678 92433 * c(ARHGEF34P, ARHGEF5) 0.337 1 NA 0.519388537032652 78 0.267165039208273 1 1 0 -5.76543347076586 LTS-013 chr7 144072679 144072689 11 * ARHGEF5 NA 0 NA 0.771 1 NA NA NA NA NA LTS-013 chr7 144072690 148515168 4442479 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, EZH2, CNTNAP2, TPK1, ARHGEF5, CUL1) 0.418445425878002 18 0.11517825060212 0.981929923762891 743 0.400221822388323 3 2 1 -6.91506347660353 LTS-013 chr7 148515169 148516075 907 * EZH2 NA 0 NA 0.485 1 NA NA NA NA NA LTS-013 chr7 148516076 158524763 10008688 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, GIMAP2, GBX1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, NA NA NA NA NA NA NA NA NA LTS-013 ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, XRCC2, MIR671, ZNF212, ZNF767P, TMUB1, ZNF282, KRBA1, ASIC3, PDIA4, UBE3C) 0.387216714214801 205 0.103110574755912 0.863184233853656 8330 0.277896531433333 3 2 1 -6.86833560574636 LTS-013 NA NA NA NA LTS-013 chr7 158524764 158524830 67 * ESYT2 0.377 1 NA 0.800575785193624 3 0.0790084383678942 3 3 0 -5.76449735702042 LTS-013 chr7 158524831 158930775 405945 * c(LINC00689, WDR60, ESYT2, VIPR2) 0.356382096903772 50 0.0577086595560415 0.837086892994292 487 0.167591946490495 3 2 1 -6.89619789955742 LTS-013 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 0.834024999030102 19 0.18886822040344 3 NA NA -5.77372178614885 LTS-013 chr8 182757 195254 12498 * ZNF596 0.319 1 NA 0.454529557015023 30 0.0962623868727385 1 1 0 -5.77202891322627 LTS-013 chr8 195255 616329 421075 * c(TDRP, ERICH1, ZNF596, FBXO25) 0.309388490004193 17 0.071401567374459 0.515054210113927 288 0.257706376799166 1 1 0 -6.74528917358487 LTS-013 chr8 616330 616334 5 * ERICH1 NA 0 NA 0.581 1 NA NA NA NA NA LTS-013 chr8 616335 10211062 9594728 * c(FAM66B, ZNF705G, FAM66E, ZNF705B, LOC100287015, DEFB4B, MIR548I3, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, CLDN23, LOC157273, SGK223, LINC00599, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, CLN8, DEFB107A, ANGPT2, FAM86B3P, LOC286083, XKR5, USP17L8, USP17L1, MIR124-1, FAM90A7P, FAM90A10P, MSRA, DEFA8P, DEFA9P, DEFA10P, DEFB107B, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, USP17L3, SPAG11A, MIR596, NA NA NA NA NA NA NA NA NA LTS-013 MIR597, DEFA11P, DEFA1B, MCPH1, PPP1R3B, TNKS, ERI1, MYOM2, DLGAP2, MFHAS1, ARHGEF10, KBTBD11) 0.404240400396941 126 0.128681231842765 0.613846635092155 3069 0.207441666902687 2 1 1 -8.46772698317115 LTS-013 NA NA NA NA LTS-013 chr8 10211063 10211538 476 * MSRA NA 0 NA 0.595377322328136 11 0.0385908609058485 2 NA NA -5.76946767313964 LTS-013 chr8 10211539 10285658 74120 * MSRA NA 0 NA 1.095 1 NA NA NA NA NA LTS-013 chr8 10285659 10286273 615 * MSRA 0.309 1 NA 0.934813624016541 13 0.195647806280991 3 3 0 -5.76442385556392 LTS-013 chr8 10286274 12888954 2602681 * c(FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, CTSB, TDH, PRSS55, C8orf74, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, XKR6, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSRA, PINX1, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, MIR598, ZNF705D, FAM90A2P, LOC729732, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, LONRF1, RP1L1) 0.321273946117657 105 0.0952897067113138 1.00141757136635 1932 0.416114157430485 4 3 1 -6.81198900067159 LTS-013 chr8 12888955 12952230 63276 * c(DLC1, KIAA1456) 0.273932682271329 3 0.156720558106884 0.80049830194841 87 0.162393685741384 2 2 0 -6.84163315569063 LTS-013 chr8 12952231 12957475 5245 * DLC1 0.5 1 NA 0.764770429708757 33 0.100220306567506 2 2 0 -5.76682100311867 LTS-013 chr8 12957476 13162149 204674 * DLC1 0.459930180285998 5 0.0243864716595083 0.776624969844733 67 0.173758054780449 2 1 1 -8.09980098848883 LTS-013 chr8 13162150 26723049 13560900 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, DLC1, PNMA2, ADAM28, LZTS1, VPS37A, NKX2-6, SGCZ, ADRA1A, PEBP4, CDCA2, C8orf48, DPYSL2, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, FGF20, GFRA2, ADAMDEC1, GNRH1, LOC286059, MICU3, LOC286114, CNOT7, LOC389641, LOXL2, LPL, MIR320A, ASAH1, MSR1, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, NA NA NA NA NA NA NA NA NA LTS-013 C8orf58, KCTD9, PIWIL2, INTS10, PPP2R2A, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, BNIP3L, STC1, NUDT18, TUSC3, DOCK5, BIN3-IT1, REEP4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, CHMP7, ENTPD4, PHYHIP) 0.435294205600242 228 0.0802479333928213 0.616269726466413 8310 0.162331501162776 2 1 1 -9.72549492855852 LTS-013 NA NA NA NA LTS-013 chr8 26723050 27093751 370702 * character(0) 0 1 NA 0.605988470760136 45 0.674308420127278 2 2 0 -5.77467300858002 LTS-013 chr8 27093752 27297754 204003 * c(PTK2B, TRIM35, STMN4) 0.166477008629921 10 0.227748496762938 0.629127431716321 274 0.301770213192996 2 2 0 -6.77586246193435 LTS-013 chr8 27297755 27308538 10784 * PTK2B 0.485 1 NA 0.628489463497498 27 0.235743655747236 2 2 0 -5.76578058083393 LTS-013 chr8 27308539 33230370 5921832 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, PURG, NRG1, NUGGC, SCARA3, SARAF, PNOC, ELP3, PPP2CB, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, WRN, HMBOX1, FZD3, UBXN8, FUT10) 0.428135002400277 82 0.0703166034551544 0.605188221791305 3701 0.189575910679261 2 1 1 -8.34361943268928 LTS-013 chr8 33230371 33246453 16083 * FUT10 NA 0 NA 0.752 1 NA NA NA NA NA LTS-013 chr8 33246454 33455300 208847 * c(DUSP26, RNF122, TTI2, MAK16, FUT10) 0.382870882138503 18 0.0637567118086684 0.806481220223321 298 0.181166185994455 3 2 1 -6.77886549924957 LTS-013 chr8 33455301 33455306 6 * DUSP26 NA 0 NA 0.721 1 NA NA NA NA NA LTS-013 chr8 35092915 35654089 561175 * UNC5D NA 0 NA 1.03831383540047 241 0.234026710906478 4 NA NA -5.78470481064579 LTS-013 chr8 36641796 36644799 3004 * KCNU1 0 1 NA 0.973431234151645 7 1.95907280061136 3 3 0 -5.76441300833564 LTS-013 chr8 36644800 37418016 773217 * KCNU1 0.4739454136373 4 0.017907168024751 0.716599987985888 196 0.208512730964704 2 1 1 -9.89227047222127 LTS-013 chr8 37418017 39142479 1724463 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.300068621657446 22 0.103462522231451 1.00408130139666 2680 0.221184108502094 4 3 1 -6.92131884495607 LTS-013 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.439 1 NA NA NA NA NA LTS-013 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.534275891128174 57 0.278180120062514 1 NA NA -5.76563689792689 LTS-013 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.994 1 NA NA NA NA NA LTS-013 chr8 39442068 43157219 3715152 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, POTEA, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.302217753487627 54 0.079379100393713 1.02211638603109 2933 0.297038977732918 4 3 1 -6.88905952729521 LTS-013 chr8 43157220 43212050 54831 * POTEA NA 0 NA 1.12674346560393 22 0.318664474987482 4 NA NA -5.76459955366893 LTS-013 chr8 47752736 47759712 6977 * LINC00293 0.26 1 NA 1.28883402016491 23 0.648343892060025 5 5 0 -5.76441080779963 LTS-013 chr8 47759713 61694052 13934340 * c(SBF1P1, LOC100287846, LINC00968, LINC01606, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CYP7A1, SDR16C5, SPIDR, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, LINC00293, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, CHD7, PRKDC, RAB2A, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, UBE2V2, CA8, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.24801059137305 82 0.0978785427137016 1.21844847217708 4634 0.381176087434977 5 4 1 -6.99165309165674 LTS-013 chr8 61694053 61707554 13502 * CHD7 NA 0 NA 0.927 1 NA NA NA NA NA LTS-013 chr8 61707555 61774849 67295 * CHD7 0.277519226706964 2 0.0325269119345812 1.00206982532047 220 0.25206718302302 5 4 1 -6.81078211576582 LTS-013 chr8 61774850 67968830 6193981 * c(TCF24, MIR124-2HG, LOC100130298, LINC00967, RRS1-AS1, C8orf44-SGK3, MIR4470, YTHDF3-AS1, COPS5, ADHFE1, CRH, MCMDC2, CLVS1, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, MIR124-2, ASPH, MYBL1, PDE7A, ARMC1, LINC00251, CHD7, C8orf44, SNHG6, SNORD87, UG0898H09, TTPA, VCPIP1, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.212612865557227 33 0.0968851827492916 1.27105554969598 2336 0.437558452258365 5 4 1 -6.94339219630599 LTS-013 chr8 67968831 67969560 730 * COPS5 NA 0 NA 2.217 1 NA NA NA NA NA LTS-013 chr8 67969561 71012856 3043296 * c(LINC01592, ARFGEF1, COPS5, C8orf34, SULF1, C8orf34-AS1, CPA6, PRDM14, CSPP1, PREX2, SLCO5A1) 0.221359892391013 22 0.095529930034872 1.38230268962096 1512 0.399765010805717 6 5 1 -6.81751958925227 LTS-013 chr8 71012857 77893364 6880508 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, NCOA2, RDH10, SBSPON, EYA1, TRAM1, LY96, STAU2, LACTB2-AS1, HNF4G, XKR9, LOC392232, MIR2052HG, PI15, LACTB2, GDAP1, TMEM70, UBE2W, JPH1, PEX2, RPL7, TCEB1, TERF1, ZFHX4, CRISPLD1, TRPA1, MSC, KCNB2) 0.234715253314869 49 0.0910244930407928 1.29221276340179 2710 0.433279949380918 5 4 1 -6.82070010723459 LTS-013 chr8 77893365 77893695 331 * PEX2 NA 0 NA 0.989 1 NA NA NA NA NA LTS-013 chr8 77893696 87162588 9268893 * c(REXO1L2P, MIR5708, LOC101241902, STMN2, RALYL, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf59, ZC2HC1A, PMP2, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, CA1, CA2, CA3, ZFAND1, LRRCC1, PSKH2, CHMP4C) 0.298307041956435 19 0.120053375069163 1.10895022451963 2303 0.273341685934363 4 3 1 -6.7540622699459 LTS-013 chr8 87162589 87163650 1062 * ATP6V0D2 NA 0 NA 1.742 1 NA NA NA NA NA LTS-013 chr8 87163651 87666251 502601 * c(WWP1, SLC7A13, ATP6V0D2, RMDN1, CNGB3, CPNE3) 0.295252270399975 10 0.0464161131026237 1.24576742270282 556 0.293032809779218 5 4 1 -6.91682209026803 LTS-013 chr8 87666252 88483483 817232 * c(CNBD1, CNGB3) 0.198 1 NA 1.13824596594354 99 0.242301761614965 4 4 0 -5.77424137554302 LTS-013 chr8 88483484 89209548 726065 * c(DCAF4L2, MMP16) 0.131399687769663 4 0.0975581023459012 1.14089290302739 340 0.392053410326543 4 4 0 -6.73892002952582 LTS-013 chr8 89209549 104831813 15622265 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR378D2, MIR4661, MIR4471, C8orf37-AS1, MIR5680, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, SLC26A7, CTHRC1, OSR2, COX6C, FAM92A1, NDUFAF6, BAALC-AS2, ANKRD46, C8orf37, VPS13B, DECR1, SNX31, TMEM64, ERICH5, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, TRIQK, DPY19L4, FBXO43, KCNS2, C8orf87, RBM12B, NA NA NA NA NA NA NA NA NA LTS-013 GDF6, MATN2, MMP16, FLJ46284, FLJ42969, NBN, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, OTUD6B, ATP6V1C1, POLR2K, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, SDC2, NECAB1, LINC00535, SPAG1, STK3, MIR599, KLF10, OSGIN2, UQCRB, YWHAZ, CALB1, PLEKHF2, NIPAL2, BAALC, GRHL2, SLC25A32, FZD6, NACAP1, NCALD, TSPYL5, RUNX1T1, RIPK2, TMEM67, CCNE2, MTDH, TP53INP1, RIMS2, PTDSS1) 0.175376277948098 123 0.059572853130163 0.928397147410462 7697 0.980310238457456 3 3 0 -6.7527104846528 LTS-013 NA NA NA NA LTS-013 chr8 104831814 113516197 8684384 * c(CSMD3, ABRA, TMEM74, DPYS, ZFPM2, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, OXR1, SYBU, ENY2, TRHR, DCSTAMP, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.155840704528456 35 0.0847505682785043 0.995187347668299 2499 0.301850924869445 3 3 0 -7.27114068835881 LTS-013 chr8 113516198 113518907 2710 * CSMD3 NA 0 NA 1.298 1 NA NA NA NA NA LTS-013 chr8 113518908 125343042 11824135 * c(FAM83A-AS1, MIR2053, MIR3610, ZHX1-C8orf76, MIR4663, LINC00536, COLEC10, ZHX1, MAL2, CSMD3, FBXO32, TMEM65, FAM91A1, SLC30A8, EXT1, ZHX2, MTBP, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, NOV, TNFRSF11B, ENPP2, WDYHV1, SAMD12-AS1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, TAF2, TRPS1, COL14A1, DSCC1, DERL1, UTP23, C8orf76, FAM83A, EIF3H, MED30, TBC1D31) 0.150622622543408 61 0.0550889345547952 1.07023582713781 3964 0.423334900602374 4 4 0 -6.7980041076833 LTS-013 chr8 125343043 137877601 12534559 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, RNF139, ADCY8, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, EFR3A, LRRC6, NSMCE2, LINC01591, ASAP1-IT1, KCNQ3, MIR30B, MIR30D, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, SQLE, TG, CASC8, LINC00977, OC90, TATDN1, WISP1, HPYR1, MTSS1, KIAA0196 NA NA NA NA NA NA NA NA NA LTS-013 ) 0.154350711583067 81 0.05011112650899 1.01217819251011 3630 0.32383280081779 4 4 0 -7.26073002871716 LTS-013 NA NA NA NA LTS-013 chr8 139142262 141526528 2384267 * c(COL22A1, FAM135B, KCNK9, CHRAC1, TRAPPC9) 0.105180522267928 6 0.105072673263159 1.5505478173826 834 0.572960306545832 6 6 0 -6.73908871078672 LTS-013 chr8 141526529 141559358 32830 * c(AGO2, CHRAC1) 0.2 1 NA 1.59980687772346 71 0.498692689732621 7 7 0 -5.76469548030632 LTS-013 chr8 141559359 146203412 4644054 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, ZNF252P, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, NA NA NA NA NA NA NA NA NA LTS-013 MROH5, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RECQL4, LRRC14, ZNF623) 0.207375171039499 192 0.0529371599603569 1.5348624483374 7860 0.408741933658739 6 5 1 -6.8885244236949 LTS-013 NA NA NA NA LTS-013 chr8 146203413 146280905 77493 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) NA 0 NA 1.52823156666473 169 0.264863684988732 6 NA NA -5.76465521410275 LTS-013 chr9 14732 14764 33 * WASH1 0.5 1 NA 0.212 1 NA NA NA NA NA LTS-013 chr9 14765 841830 827066 * c(WASH1, C9orf66, DMRT1, FOXD4, KANK1, CBWD1, FAM138C, DOCK8) 0.295248632721106 27 0.0684806625230885 0.482491343318125 583 0.144567629001635 1 1 0 -6.7695678591264 LTS-013 chr9 841831 841848 18 * DMRT1 NA 0 NA 0.649 1 NA NA NA NA NA LTS-013 chr9 841849 2123873 1282025 * c(DMRT2, DMRT1, DMRT3, SMARCA2) 0.170103609169227 3 0.0177857620959388 0.816066675902581 304 0.307524463041043 3 3 0 -6.82286384039936 LTS-013 chr9 2123874 2158419 34546 * SMARCA2 NA 0 NA 0.636 1 NA NA NA NA NA LTS-013 chr9 2158420 32784165 30625746 * c(CDKN2B-AS1, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, RCL1, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, INSL6, UHRF2, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, ELAVL2, C9orf72, CCDC171, KDM4C, MLANA, DDX58, SLC24A2, RANBP6, GLDC, TUSC1, LURAP1L, CD274, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, NA NA NA NA NA NA NA NA NA LTS-013 IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, INSL4, JAK2, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, NFIB, ACO1, AK3, CDKN2A-AS1, EQTN, BNC2, HAUS6, CNTLN, FOCAD, SPATA6L, MIR31HG, CDC37L1, DENND4C, PLGRKT, KLHL9, IFNK, MIR491, RIC1, PTPRD, RFX3, RLN1, RLN2, RPS6, DMRTA1, SH3GL2, LRRC19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SLC1A1, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.234463901837152 186 0.0661456364351645 0.640837090020779 9526 0.180934380795372 2 2 0 -9.51291601563602 LTS-013 NA NA NA NA LTS-013 chr9 32784166 32785147 982 * TMEM215 0.254336362532557 2 0.300520382004283 0.855259264236574 20 0.727390215988495 9 7 2 -6.73433841112996 LTS-013 chr9 32785148 33026572 241425 * c(DNAJA1, TMEM215, APTX) 0.473 1 NA 0.818679759753023 118 0.145684351416748 3 3 0 -5.82525074815351 LTS-013 chr9 33026573 34725313 1698741 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, PTENP1, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, ENHO, CNTFR-AS1, SUGT1P1, ANKRD18B, NFX1, UBAP1, CHMP5, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, CCL19, CCL21, NOL6, C9orf24) 0.372418486101984 44 0.102910683990986 0.837429698034781 2573 0.230281793729783 3 2 1 -6.83713793773128 LTS-013 chr9 34725314 34726303 990 * FAM205A NA 0 NA 0.372301609730496 46 0.339358539538182 0 NA NA -5.76464136486833 LTS-013 chr9 34726304 34833887 107584 * c(FAM205A, FAM205BP) NA 0 NA 0.842584648142918 94 0.187989445373198 3 NA NA -5.77238371529748 LTS-013 chr9 34833888 34835123 1236 * FAM205BP 0.475 1 NA 0.513628412937748 49 0.415842478393844 1 1 0 -5.76441284338686 LTS-013 chr9 34835124 35236608 401485 * c(UNC13B, C9orf131, FANCG, PHF24, DNAJB5, STOML2, FAM205BP, VCP, FAM214B, PIGO) 0.37819296570307 16 0.112485776878679 0.873913823755954 844 0.239560654091389 3 2 1 -6.73746743070815 LTS-013 chr9 35236609 37486038 2249430 * c(GNE, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, RNF38, GLIPR2, LINC00961, ATP8B5P, CCDC107, SPAG8, SIT1, FAM221B, OR13J1, NPR2, PAX5, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, CA9, ZCCHC7, RECK, HINT2, ARHGEF39, CCIN, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.425134515706057 43 0.10559340833986 0.985055673996814 3054 0.268117426146291 4 2 2 -6.95463313129308 LTS-013 chr9 37486039 37888665 402627 * c(TRMT10B, FRMPD1, FBXO10, TOMM5, EXOSC3, POLR1E, DCAF10, SLC25A51) 0.332047207072973 12 0.156981831606544 1.4413874667297 567 0.897942371384527 7 5 2 -6.74309853599291 LTS-013 chr9 37888666 37919143 30478 * c(SHB, SLC25A51) NA 0 NA 1.099 1 NA NA NA NA NA LTS-013 chr9 37919144 40498570 2579427 * c(FAM95C, FAM201A, ALDH1B1, ANKRD18A, IGFBPL1, FAM74A1, ZNF658B, NA, SHB, NA, CNTNAP3) 0.466279407454753 6 0.0592804071061144 0.973545669383065 414 0.216403585681913 4 2 2 -7.54297248062112 LTS-013 chr9 40498571 43815927 3317357 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) 0.227 1 NA 0.578389146051452 39 0.235655690761743 1 1 0 -6.42748723878027 LTS-013 chr9 43815928 43816026 99 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.725 1 NA NA NA NA NA LTS-013 chr9 43816027 43861081 45055 * c(LOC286297, LINC01189, CNTNAP3B) 0.478 1 NA 1.02335639014393 31 0.322399528402227 4 4 0 -5.76576041699761 LTS-013 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.977044694330451 8 0.294738988646856 3 NA NA -5.77896559335258 LTS-013 chr9 65602571 68409789 2807219 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.358278030126064 18 0.0889418000202923 1.16219086852678 50 0.696712606108289 4 3 1 -6.8646873895203 LTS-013 chr9 68409790 68409798 9 * character(0) 0.065 1 NA 2.932 1 NA NA NA NA NA LTS-013 chr9 68409799 69120851 711053 * c(FRG1HP, PGM5P2, FRG1JP) 0.260731591589906 8 0.154764336977225 1.14494266905799 25 0.757699945009016 5 4 1 -6.74689820114226 LTS-013 chr9 69120852 69256369 135518 * c(LOC440896, PGM5P2, CBWD6, FOXD4L6) NA 0 NA 0.807 1 NA NA NA NA NA LTS-013 chr9 69256370 99925094 30668725 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MIR4670, BANCR, SEMA4D, SPTLC1, GADD45G, SPIN1, SLC35D2, FAM122A, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, NA NA NA NA NA NA NA NA NA LTS-013 NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SPATA31D5P, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, PGM5, PHF2, SHC3, NUTM2F, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RFK, KIF27, PRKACG, BARX1, PGM5-AS1, PTCH1, NAA35, RORB, SLC28A3, CBWD6, SPATA31C2, IPPK, WNK2, RPSAP9, FOXD4L5, SYK, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, CDC14B, FBP2, FGD3, FAM189A2, TJP2, GDA, GNA14) 0.244341388637152 222 0.0658930295370293 0.66953625837347 14170 0.351544367025233 2 2 0 -7.13841079364681 LTS-013 NA NA NA NA LTS-013 chr9 99925095 99959512 34418 * character(0) NA 0 NA 0.424 1 NA NA NA NA NA LTS-013 chr9 99959513 99961772 2260 * character(0) NA 0 NA 0.383042400032422 46 0.23823790022045 0 NA NA -5.76578861261767 LTS-013 chr9 99961773 101052750 1090978 * c(CCDC180, LOC100499484, ANP32B, TSTD2, FOXE1, TDRD7, LOC286359, NCBP1, TRMO, NANS, TBC1D2, HEMGN, LOC100499484-C9ORF174, TMOD1, CORO2A, XPA, GABBR2, TRIM14) 0.219372308176752 11 0.10904986349039 0.682234469026034 1442 0.214298813375446 2 2 0 -6.74386670315863 LTS-013 chr9 101052751 101052866 116 * GABBR2 NA 0 NA 0.5 1 NA NA NA NA NA LTS-013 chr9 101052867 102892032 1839166 * c(NAMA, SEC61B, COL15A1, ANKS6, ERP44, INVS, STX17-AS1, STX17, TGFBR1, GALNT12, NR4A3, ALG2, GABBR2) 0.202082352159294 11 0.0881094360853179 0.621158118679871 1170 0.141739384201636 2 2 0 -7.45088517693831 LTS-013 chr9 102892033 130100305 27208273 * c(SNORA70C, FAM225B, ASTN2-AS1, LOC100129034, LOC100288842, MIR548Q, MIR181A2HG, MIR3134, LOC100505478, MSANTD3-TMEFF1, MIR4668, MIR4478, RABEPK, SMC2, ZBTB6, NEK6, ACTL7B, ACTL7A, CNTRL, AKAP2, RPL35, KIF12, PALM2, WDR31, ZNF618, GRIN3A, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR1L8, OR1N2, OR1N1, DAB2IP, CYLC2, OR1Q1, TTLL11, ZNF483, C9orf84, KIAA1958, BRINP1, OLFML2A, ZNF883, NA NA NA NA NA NA NA NA NA LTS-013 ABCA1, LPAR1, MEGF9, TMEM268, STOM, ALAD, FKTN, ALDOB, PTGR1, TRIM32, ZBTB43, ASTN2, FKBP15, KIAA0368, SLC44A1, ANGPTL2, RABGAP1, TMEM245, FRRS1L, CDC26, NR5A1, PSMD5-AS1, MORN5, OR1L4, TXNDC8, C9orf43, WHRN, AMBP, NIPSNAP3A, GAPVD1, PHF19, FBXW2, OR1J4, OR2K2, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, GGTA1P, INVS, GNG10, GOLGA1, GPR21, CRB2, SCAI, FAM225A, OR13C9, OR13D1, NA, GSN, HSPA5, TNC, ADGRD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 OR1J1, OR1B1, MURC, OR13C2, OR1L6, OR5C1, OR1K1, LMX1B, C9orf152, SNX30, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR32, PALM2-AKAP2, MUSK, NDUFA8, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, RAB14, POLE3, MRPL50, RC3H2, EPB41L4B, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, STRBP, PPP3R2, PPP6C, CDK5RAP2, RNF20, PSMB7, BAAT, PSMD5, PTGS1, ZBTB26, DENND1A, PTPN3, SLC46A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 LINC00474, INIP, ZNF462, RAD23B, RGS3, MIR455, NRON, SUSD1, LRRC37A5P, TAL2, SNORD90, MIR601, TLR4, TRAF1, C5, TXN, UGCG, ZFP37, ZNF189, MAPKAP1, SVEP1, AKNA, MIR600HG, ARPC5L, HDHD3, FSD1L, GARNL3, HSDL2, TMEM246, IKBKAP, COL27A1, TMEFF1, CTNNAL1, MVB12B, PRPF4, MSANTD3, MRRF, RBM18, KLF4, LHX2, TNFSF8, ATP6V1G1, RALGPS1, TNFSF15, PTBP3) 0.231528704048628 304 0.0727729004562816 0.684294119483311 17621 0.515813914258023 2 2 0 -6.79660026969608 LTS-013 NA NA NA NA LTS-013 chr9 130100306 130164993 64688 * c(SLC2A8, GARNL3) 0.27 1 NA 0.662820580793977 121 0.140965522424445 2 2 0 -5.77038286625944 LTS-013 chr9 130164994 141069927 10904934 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, SLC25A25-AS1, MAN1B1-AS1, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, NA NA NA NA NA NA NA NA NA LTS-013 USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, TTC16, DBH, STKLD1, QSOX2, SARDH, DNM1, TOR1A, ABCA2, ENDOG, ENG, AK1, NAIF1, FCN1, FCN2, DOLK, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, FPGS, ABL1, FUT7, PHYHD1, CIZ1, NELFB, NSMF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, TOR1B, TOR2A, ABO, GOLGA2, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, QRFP, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 LCN2, FAM102A, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, ODF2, PAEP, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, TOR4A, EXD3, PTPA, RABL6, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, CACNA1B, C9orf16, EHMT1, PTGES2, BRD3, NUP214, LHX3, URM1, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.233154498811929 455 0.0643624436423859 0.681940433830301 19391 0.399462970749444 2 2 0 -6.80883569837094 LTS-013 NA NA NA NA LTS-013 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.566279056397023 7 0.276431426095756 1 NA NA -5.7646266777043 LTS-013 chr10 94832 94870 39 * TUBB8 0.47 1 NA 0.9 1 NA NA NA NA NA LTS-013 chr10 94871 5695068 5600198 * c(LINC00704, PITRM1-AS1, MIR5699, NET1, ADARB2, PITRM1, ZMYND11, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, AKR1C8P, IDI1, TUBB8, AKR1C6P, LINC00200, LINC00701, PRR26, CALML5, PFKP, IDI2-AS1, ADARB2-AS1, ASB13, TUBAL3, CALML3, AKR1E2, AKR1C3, IDI2) 0.346384117109016 99 0.0421754881374116 1.39093705580439 2440 0.400697391236611 6 4 2 -6.9439853448495 LTS-013 chr10 5695069 5708395 13327 * ASB13 NA 0 NA 1.061 1 NA NA NA NA NA LTS-013 chr10 5708396 8117149 2408754 * c(MIR3155A, LINC00707, MIR3155B, KIN, GATA3, GDI2, IL2RA, IL15RA, ITIH2, LOC399715, GATA3-AS1, PRKCQ-AS1, ATP5C1, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, ITIH5, TAF3, FBXO18, RBM17) 0.357994561265077 46 0.0453668886895716 1.2567179540397 1944 0.295304438694061 6 4 2 -7.21721378751777 LTS-013 chr10 9281297 11299629 2018333 * c(CELF2, SFTA1P, LINC00710, CELF2-AS2) 0.307 1 NA 1.85893982728267 59 1.03954446987657 8 8 0 -5.76490511672312 LTS-013 chr10 11299630 11359469 59840 * CELF2 0.204 1 NA 1.80452964630594 45 0.401479332650455 8 8 0 -5.76498318749137 LTS-013 chr10 11359470 14890875 3531406 * c(MIR1265, MIR4480, OPTN, CELF2, NUDT5, PROSER2-AS1, UCMA, BEND7, SEPHS1, PROSER2, UPF2, NA, CDNF, HSPA14, PHYH, SEC61A2, MCM10, DHTKD1, FRMD4A, CAMK1D, ECHDC3, FAM107B, CCDC3, PRPF18, CDC123, USP6NL) 0.250773314675008 56 0.0543496615839116 1.80832391879288 2371 0.546926713482029 9 7 2 -6.91204333656856 LTS-013 chr10 14890876 14891403 528 * HSPA14 NA 0 NA 1.385 1 NA NA NA NA NA LTS-013 chr10 14891404 17813397 2921994 * c(ST8SIA6-AS1, PPIAP30, RPP38, TRDMT1, C10orf111, FAM171A1, ST8SIA6, C1QL3, ACBD7, HSPA14, OLAH, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER, NMT2) 0.274999874882136 38 0.0637498947088635 1.62835841601336 1998 0.435876105862015 8 6 2 -6.97412073944515 LTS-013 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.078 1 NA NA NA NA NA LTS-013 chr10 17842448 17891731 49284 * c(MRC1, NA, TMEM236) 0.281 1 NA 0.477410412324269 39 0.615097175869377 1 1 0 -5.76459006024014 LTS-013 chr10 17891732 17891770 39 * c(MRC1, NA, TMEM236) NA 0 NA 1.382 1 NA NA NA NA NA LTS-013 chr10 17891771 18086893 195123 * c(MRC1, NA, TMEM236) NA 0 NA 0.915977753148284 48 1.10672297237775 3 NA NA -5.7644390822766 LTS-013 chr10 18086894 18087452 559 * c(MRC1, NA, TMEM236) NA 0 NA 1.546 1 NA NA NA NA NA LTS-013 chr10 18087453 23606787 5519335 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, NA, DNAJC1, BMI1, TMEM236, CACNB2, MLLT10, PLXDC2, SPAG6) 0.239521966296819 51 0.0973776678508909 1.70492693730158 2251 0.707173001790876 7 6 1 -6.80176571968371 LTS-013 chr10 23606788 23606945 158 * C10orf67 NA 0 NA 3.476 1 NA NA NA NA NA LTS-013 chr10 23606946 36811771 13204826 * c(ABI1, MIR938, GPR158-AS1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, ENKUR, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, C10orf67, GAD2, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, GPR158, ARHGAP21, KIAA1462, LINC00264, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CCDC7, NA NA NA NA NA NA NA NA NA LTS-013 THNSL1, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ACBD5, ARHGAP12) 0.250528045563502 124 0.0737489677302661 1.84743316674627 5532 0.74613403246327 8 6 2 -6.90741368868757 LTS-013 NA NA NA NA LTS-013 chr10 36811772 38645343 1833572 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.242196176342958 7 0.0574796030075431 2.02508731705919 583 0.485861925486044 10 8 2 -6.80778314852344 LTS-013 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 2.14263898528922 55 0.418479500401026 9 NA NA -5.76455398449457 LTS-013 chr10 42379879 43297564 917686 * c(ZNF37BP, LOC441666, ZNF33B, LINC00839, BMS1) 0.276697015342925 9 0.167342795217216 1.10371105692501 273 0.837632473193748 5 4 1 -6.75495097296651 LTS-013 chr10 43297565 43326627 29063 * BMS1 0.427 1 NA 0.998450697421555 15 0.242333359533633 4 4 0 -5.76718547028057 LTS-013 chr10 43326628 54525923 11199296 * c(C10orf142, RSU1P2, TIMM23, MIR4294, MIR3156-1, FAM170B-AS1, LINC00840, PRKG1-AS1, MIR5100, NA, HNRNPA3P1, CHAT, C10orf10, C10orf71, ZNF488, AGAP4, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, DKK1, CSTF2T, ALOX5, NA, FAM21C, SGMS1, PTPN20, GDF2, GDF10, C10orf53, LINC00841, A1CF, HNRNPF, NA, ANKRD30BP3, FAM21A, NA, AGAP6, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, NA NA NA NA NA NA NA NA NA LTS-013 FAM35BP, LINC00619, MBL2, FAM35DP, MSMB, LRRC18, FXYD4, NPY4R, CSGALNACT2, NA, OGDHL, PRKG1, MAPK8, ASAH2, WDFY4, ARHGAP22, RBP3, RET, CXCL12, ZNF487, TMEM72, LINC00842, DRGX, NA, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, NA, PARGP1, HNRNPA1P33, FRMPD2B, ZNF22, ZNF32, OR13A1, NCOA4, ZNF239, SYT15, RASSF4, PARG, ZFAND4, GPRIN2, BMS1) 0.434140851919455 146 0.103536051377351 1.11228811539066 4948 0.440652120388219 4 2 2 -6.74969360100588 LTS-013 NA NA NA NA LTS-013 chr10 54525924 56287689 1761766 * c(MBL2, PCDH15) 0.461435550880088 14 0.0293882685721757 1.21340826244895 461 0.426780858032313 4 2 2 -7.82100267186299 LTS-013 chr10 56287690 56288050 361 * PCDH15 NA 0 NA 0.928 1 NA NA NA NA NA LTS-013 chr10 56288051 58118630 1830580 * c(MTRNR2L5, ZWINT, PCDH15) 0.445509826854392 2 0.0212132034355964 0.995991617788948 50 0.257404064950539 4 2 2 -7.69015024414295 LTS-013 chr10 58118631 58119791 1161 * ZWINT 0 1 NA 1.12230408826417 17 0.9962836015442 4 4 0 -5.76441042170098 LTS-013 chr10 58119792 63856671 5736880 * c(MIR3924, MRLN, MIR548AV, ZWINT, C10orf107, TMEM26, SLC16A9, FAM13C, IPMK, LINC01553, ANK3, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, CDK1, RHOBTB1) 0.373228344321192 15 0.136053980883639 0.994982478856787 2042 0.21538641287036 3 2 1 -7.40025769523625 LTS-013 chr10 63856672 63942883 86212 * c(RTKN2, ARID5B) NA 0 NA 0.81 1 NA NA NA NA NA LTS-013 chr10 63942884 71174736 7231853 * c(MIR1296, DNA2, EGR2, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.404154884588817 74 0.107542727188071 0.887936652445022 3464 0.298698656401595 3 2 1 -6.76703708370629 LTS-013 chr10 71174737 74293584 3118848 * c(MIR1256, MICU1, ANAPC16, COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1, CHST3, SPOCK2) 0.421200629880937 100 0.0857704541673927 0.939094722338956 3316 0.244464794352732 3 2 1 -6.91018363605874 LTS-013 chr10 74293585 74293601 17 * c(MIR1256, MICU1) 0.422 1 NA 0.582 1 NA NA NA NA NA LTS-013 chr10 74293602 74767669 474068 * c(MIR1256, MIR4676, MICU1, OIT3, P4HA1, PLA2G12B, MCU) 0.199705921838518 9 0.149559352766719 0.91873705567213 229 0.34017116958236 3 3 0 -6.76170281804526 LTS-013 chr10 74767670 75002052 234383 * c(ECD, NUDT13, FAM149B1, P4HA1) 0.442 1 NA 0.896466450331391 327 0.177390188885863 3 3 0 -5.76448630537739 LTS-013 chr10 75002053 84746621 9744569 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, PPIF, NRG3, POLR3A, CHCHD1, MSS51, CFAP70, COMTD1, ADK, SAMD8, DYDC1, EIF5AL1, USP54, FUT11, TMEM254-AS1, PLAC9, ZCCHC24, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, AP3M1, GLUD1P3, ZMIZ1-AS1, ANXA7, ANXA11, DUPD1, KCNMA1, SH2D4B, C10orf55, LINC00595, DNAJC9-AS1, MAT1A, LINC00857, MRPS16, DUSP13, PLAU, PPP3CB, ZMIZ1, MYOZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, AGAP5, NA NA NA NA NA NA NA NA NA LTS-013 BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, ZNF503, NDST2, MBL1P, DLG5, SEC24C) 0.40788430394159 99 0.103068233768721 0.922512968661054 5054 0.263998916311881 3 2 1 -6.82005218078631 LTS-013 NA NA NA NA LTS-013 chr10 84746622 84746716 95 * NRG3 NA 0 NA 0.853 1 NA NA NA NA NA LTS-013 chr10 85656265 85902394 246130 * GHITM 0.247 1 NA 0.546065862670224 9 0.121953315293645 1 1 0 -5.8376018465988 LTS-013 chr10 85902395 99677440 13775046 * c(C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, FRAT1, FAS-AS1, MIR3157, SLIT1-AS1, GRID1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR5692C2, LINC00502, RPP30, SORBS1, ADIRF, LDB3, HOGA1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, LINC00858, DNTT, CPEB3, WAPL, RRP12, TBC1D12, FRAT2, IFIT5, NA NA NA NA NA NA NA NA NA LTS-013 LRIT1, TCTN3, C10orf12, ANKRD2, MYOF, PIPSL, ANKRD1, GHITM, GLUD1, FLJ37201, GRID1, BLNK, HELLS, HHEX, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, C10orf99, SLC16A12, CC2D2B, LIPA, GOLGA7B, MIR107, C10orf62, LINC00863, IFIT1B, MIR346, EXOSC1, PLCE1, PDE6C, PGAM1, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, PPP1R3C, CRTAC1, CEP55, RNLS, PI4K2A, TM9SF3, PTEN, STAMBPL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ALDH18A1, ACTA2, RBP4, RGR, AVPI1, MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, BMPR1A, SLIT1, SNCG, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, MMRN2, UBTD1, TNKS2, MARVELD1, ZDHHC16, PCGF5, LCOR, ATAD1, ARHGAP19, LIPF, CH25H, BTAF1, PAPSS2, PDLIM1, LGI1, CDHR1, OPALIN, OPN4, ENTPD1, MINPP1, KIF20B, ZNF518A) 0.268878978203987 205 0.0768962554258493 0.559656434127643 11262 0.190588067647077 1 1 0 -8.81140487046444 LTS-013 NA NA NA NA LTS-013 chr10 99677441 99683021 5581 * CRTAC1 NA 0 NA 0.727 1 NA NA NA NA NA LTS-013 chr10 99683022 100193679 510658 * c(MIR1287, MIR4685, R3HCC1L, HPS1, CRTAC1, LOXL4, PYROXD2) 0.266123184906536 27 0.0456086411565632 0.641451397537553 425 0.175932030438102 2 2 0 -7.47658821915807 LTS-013 chr10 100193680 100195035 1356 * HPS1 0 1 NA 0.712226722319623 5 0.497264818783714 2 2 0 -5.7644110369147 LTS-013 chr10 100195036 100503821 308786 * c(HPS1, HPSE2) 0.166952190033413 2 0.213546247918337 0.659733839352727 81 0.205701343946107 2 2 0 -6.77922730406673 LTS-013 chr10 100503822 100903994 400173 * HPSE2 NA 0 NA 0.555 1 NA NA NA NA NA LTS-013 chr10 100903995 101556999 653005 * c(ABCC2, COX15, NKX2-3, CNNM1, GOT1, CUTC, ENTPD7, HPSE2, SLC25A28) 0.176549560269086 3 0.16737482885229 0.502994471310368 589 0.12267498472545 1 1 0 -7.04569139176566 LTS-013 chr10 101557000 106602595 5045596 * c(TLX1NB, MIR936, DNMBP-AS1, KCNIP2-AS1, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, MIR4482, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, CPN1, CYP17A1, CFAP58, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, DNMBP, CALHM1, DPCD, SEC31B, POLL, BLOC1S2, KCNIP2, TLX1, LBX1-AS1, ARL3, NDUFB8, NFKB2, PAX2, CALHM2, SUFU, PITX3, CNNM2, WBP1L, NA NA NA NA NA NA NA NA NA LTS-013 CWF19L1, HIF1AN, SLF2, PSD, C10orf2, AS3MT, MIR146B, SEMA4G, SCD, FBXW4, SNORA12, TAF5, MIR608, MIR609, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, CFAP43, TRIM8, KAZALD1, SFXN3, ELOVL3, PCGF6, LZTS2, MRPL43, USMG5, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, NEURL1, NOLC1, GSTO1, SH3PXD2A, SLK) 0.178492688801797 77 0.0587629801254107 0.827831971962797 7405 0.224364469107596 3 3 0 -7.14879011030966 LTS-013 NA NA NA NA LTS-013 chr10 106602596 106899085 296490 * SORCS3 0.209 1 NA 0.915996641234729 37 0.732805817639548 3 3 0 -5.7645106977659 LTS-013 chr10 106899086 106937992 38907 * SORCS3 NA 0 NA 0.889836373257376 35 0.143277998569039 3 NA NA -5.76456187203469 LTS-013 chr10 106937993 106959661 21669 * SORCS3 NA 0 NA 1.114 1 NA NA NA NA NA LTS-013 chr10 106959662 108716370 1756709 * c(SORCS1, SORCS3) NA 0 NA 1.02670208440231 243 0.192017346068096 4 NA NA -5.89675926673315 LTS-013 chr10 108716371 108923674 207304 * SORCS1 NA 0 NA 1.751 1 NA NA NA NA NA LTS-013 chr10 108923675 116194210 7270536 * c(MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, SMNDC1, SORCS1, ADD3, VTI1A, ADRA2A, ADRB1, DUSP5, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, ZDHHC6, RPL13AP6, TCF7L2, TECTB, XPNPEP1, PLEKHS1, SHOC2, CASP7, AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.230246114668224 48 0.0684536261725426 1.36360649890774 3403 0.384340845301736 6 5 1 -6.98871979240336 LTS-013 chr10 116194211 116194780 570 * ABLIM1 0.258 1 NA 1.38667004250057 11 0.163269270058559 5 5 0 -5.76446415341538 LTS-013 chr10 116194781 117823898 1629118 * c(TRUB1, ATRNL1, GFRA1, ABLIM1, FAM160B1) 0.266378561147701 8 0.0752063827078527 1.33765048927523 696 0.293624336350401 5 4 1 -6.74363767521554 LTS-013 chr10 117823899 119805914 1982016 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, RAB11FIP2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.255148711261 17 0.0514211989930452 1.45212284468075 1441 0.334804023826509 6 5 1 -6.84514789762775 LTS-013 chr10 119805915 124909975 5104061 * c(MIR3941, FAM24B-CUZD1, MIR4682, MIR4681, TACC2, PRDX3, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, SFXN4, CACUL1, DMBT1, PLPP4, FAM24B, FGFR2, RAB11FIP2, INPP5F, CASC2, WDR11-AS1, PRLHR, GRK5, HMX2, NANOS1, HMX3, ACADSB, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, WDR11, HTRA1, PLEKHA1, RGS10, FAM204A, SNORA19, IKZF5, TIAL1, MCMBP, C10orf88, EIF3A, BAG3) 0.331082129708744 68 0.0813010587863977 0.998515205146845 3412 0.564104280949754 4 3 1 -6.83729197499846 LTS-013 chr10 124909976 126463335 1553360 * c(CPXM2, GPR26, HMX2, NKX1-2, METTL10, OAT, CHST15, LHPP, BUB3, FAM53B) 0.27173868800883 27 0.10771989369924 1.10056509600011 804 0.566240825803454 5 4 1 -6.81243896301543 LTS-013 chr10 126463336 126471404 8069 * c(METTL10, FAM53B) NA 0 NA 0.838 1 NA NA NA NA NA LTS-013 chr10 126471405 127310268 838864 * c(TEX36-AS1, MIR4296, CTBP2, FAM175B, TEX36, METTL10, ZRANB1, FAM53B) 0.376052318286684 16 0.0467088499822749 0.868195869698636 388 0.216082460259618 3 2 1 -6.75746904695693 LTS-013 chr10 127310269 127344219 33951 * TEX36 NA 0 NA 1.223 1 NA NA NA NA NA LTS-013 chr10 127344220 134693137 7348918 * c(MIR378C, MIR4297, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, C10orf90, MMP21, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, INPP5A, TEX36, LINC00959, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, CFAP46, DHX32, PPP2R2D, BCCIP, PTPRE, NPS, FAM196A, BNIP3, UROS, LRRC27, ADAM12, NKX6-2, FANK1) 0.306890202513824 107 0.0931074960412937 1.02906180139549 3297 0.316709096969143 4 3 1 -6.92980304187027 LTS-013 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.474 1 NA NA NA NA NA LTS-013 chr10 134694406 134756359 61954 * CFAP46 0.279438512052845 7 0.141394079488095 0.573423437150942 173 0.530460271535368 1 1 0 -6.74872124021517 LTS-013 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.58 1 NA NA NA NA NA LTS-013 chr10 134884462 135237240 352779 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.302686641709733 31 0.0823654458293444 1.05301177760885 1086 0.280996271953676 4 3 1 -6.75852438629221 LTS-013 chr10 135237241 135267393 30153 * SPRN NA 0 NA 1.414 1 NA NA NA NA NA LTS-013 chr10 135267394 135381722 114329 * c(CYP2E1, SPRNP1, SCART1, SYCE1) 0.3657769537851 15 0.0617285146736055 1.71869021229182 274 0.545752443897952 6 4 2 -6.73824110911483 LTS-013 chr10 135381723 135473026 91304 * c(SPRNP1, FRG2B, SYCE1) 0.270186351583156 4 0.0958749185136551 0.993449194689805 38 1.01750207202336 5 4 1 -6.73686342998927 LTS-013 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.615 1 NA NA NA NA NA LTS-013 chr11 193025 193096 72 * SCGB1C1 0.411 1 NA 0.277 1 NA NA NA NA NA LTS-013 chr11 193097 792269 599173 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.15297066886987 104 0.0697683667574353 0.923808274200217 2234 0.460802765903174 3 3 0 -6.76016889539256 LTS-013 chr11 792270 1016834 224565 * c(AP2A2, CRACR2B, MUC6, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, CHID1, TSPAN4, SLC25A22, CD151) 0.183995725617468 5 0.0462547294879129 0.969921397631827 743 0.238762966524756 3 3 0 -6.82128194347619 LTS-013 chr11 1016835 1016869 35 * MUC6 0.371 1 NA 1.086 1 NA NA NA NA NA LTS-013 chr11 1016870 1258295 241426 * c(MUC2, MUC6, MUC5B) 0.337669644494448 62 0.0982207606428427 1.04189329513297 779 0.475358218955238 4 3 1 -6.75909121563796 LTS-013 chr11 1258296 1260145 1850 * MUC5B 0.211 1 NA 1.02189154023106 5 0.327211246750475 4 4 0 -5.76446610400536 LTS-013 chr11 1260146 2869947 1609802 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.160609471652928 89 0.0588707596622241 0.989377833686767 2007 0.31861879492982 3 3 0 -6.82506294886379 LTS-013 chr11 2869948 4968142 2098195 * c(LOC100506082, MIR4687, CDKN1C, OR7E12P, OSBPL5, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, MRGPRG-AS1, KCNQ1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NAP1L4, NUP98, SLC22A18, SLC22A18AS, TRIM68, KCNQ1DN, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, OR51G1, OR51G2, OR51E2, CARS) 0.165786019783501 63 0.0438454437663493 0.930557168930927 2243 0.305538743906709 3 3 0 -6.74879707715185 LTS-013 chr11 4968143 4968197 55 * OR51A4 NA 0 NA 0.932 1 NA NA NA NA NA LTS-013 chr11 4968198 4976915 8718 * c(OR51A4, OR51A2) NA 0 NA 0.180050201321645 38 0.178471112851164 0 NA NA -5.80758540258122 LTS-013 chr11 4976916 4976954 39 * OR51A2 0.127 1 NA 3.309 1 NA NA NA NA NA LTS-013 chr11 4976955 5776792 799838 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.163723480659468 66 0.0602650033549375 0.973359017515325 1214 0.554944369220203 3 3 0 -6.74492336070742 LTS-013 chr11 5776793 5809383 32591 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.206 1 NA 1.52927421572426 39 0.69774397297423 6 6 0 -5.76442605952006 LTS-013 chr11 5809384 5809482 99 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.983 1 NA NA NA NA NA LTS-013 chr11 5809483 14380767 8571285 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, LYVE1, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, ADM, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, NA NA NA NA NA NA NA NA NA LTS-013 OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, CYB5R2, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RIC3, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.159013307022302 209 0.0489615534236279 0.92445675362123 8656 0.344411580236069 3 3 0 -6.78167308216738 LTS-013 NA NA NA NA LTS-013 chr11 14380768 14385884 5117 * RRAS2 NA 0 NA 1.066 1 NA NA NA NA NA LTS-013 chr11 14385885 22882027 8496143 * c(LOC100126784, CCDC179, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, NAV2-AS5, PRMT3, HTATIP2, OR7E14P, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, CYP2R1, DBX1, COPB1, PLEKHA7, SPTY2D1, TMEM86A, LDHAL6A, ANO5, FANCF, RRAS2, SVIP, MRGPRX1, GAS2, SERGEF, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, LDHA, LDHC, NAV2-AS4, MYOD1, NELL1, NUCB2, LOC494141, PDE3B, PIK3C2A, ZDHHC13, UEVLD, NA NA NA NA NA NA NA NA NA LTS-013 SOX6, PSMA1, SLC17A6, RPS13, SAA1, SAA2, SAA3P, SAA4, ABCC8, TPH1, TSG101, CALCA, CALCB, E2F8, CSRP3, PTPN5, NAV2, SLC6A5) 0.122253665984446 96 0.056113841054545 1.16879938983492 5751 0.512527163724441 4 4 0 -6.84596967318669 LTS-013 NA NA NA NA LTS-013 chr11 24133370 27520336 3386967 * c(MUC15, SLC5A12, LUZP2, FIBIN, LIN7C, LGR4, ANO3, BBOX1, CCDC34) 0.176697405231755 26 0.0721191748747542 0.948509048421446 1038 0.289790513107545 3 3 0 -6.80819282331611 LTS-013 chr11 27520337 30914514 3394178 * c(DCDC5, LINC00678, ARL14EP, METTL15, FSHB, KCNA4, BDNF-AS, LIN7C, BDNF, MIR610, MPPED2, KIF18A) 0.192128641280519 16 0.0808718894301351 0.835214647929327 772 0.363655530955674 3 3 0 -6.87322160138806 LTS-013 chr11 30914515 30915761 1247 * DCDC5 NA 0 NA 0.552 1 NA NA NA NA NA LTS-013 chr11 30915762 34188982 3273221 * c(C11orf91, DCDC5, HIPK3, EIF3M, DNAJC24, CSTF3, IMMP1L, KIAA1549L, ABTB2, FBXO3, ELP4, LINC00294, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, WT1, PRRG4, QSER1, DEPDC7, CD59) 0.181214815224335 37 0.0987221280086616 0.671014679925047 2854 0.243095351430357 2 2 0 -6.86426345976032 LTS-013 chr11 34188983 34378381 189399 * ABTB2 0.217 1 NA 0.698458246065032 33 0.124602709550285 2 2 0 -5.76447405594078 LTS-013 chr11 34378382 34963459 585078 * c(MIR1343, ELF5, ABTB2, EHF, APIP, PDHX, CAT) 0.243700625404571 28 0.0797458263823056 0.640941910039068 400 0.303206240874116 2 2 0 -6.83870174303147 LTS-013 chr11 34963460 35017363 53904 * c(MIR1343, PDHX) 0.3 1 NA 0.618605445351482 61 0.118205752821087 2 2 0 -5.7999970709774 LTS-013 chr11 35017364 44331382 9314019 * c(MIR670, LOC100507205, ALKBH3-AS1, MIR3973, C11orf74, LDLRAD3, EXT2, ALKBH3, FJX1, PAMR1, COMMD9, C11orf96, ACCSL, HNRNPKP3, MIR129-2, HSD17B12, TRIM44, TTC17, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, TRAF6, SEC14L1P1, PRR5L, PDHX, ACCS, API5, CD44) 0.240662068840289 41 0.0615722260795421 0.666460073712703 2335 0.308258582899455 2 2 0 -6.97658207334122 LTS-013 chr11 44331383 47640398 3309016 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, LARGE2, CRY2, C11orf94, DDB2, F2, LOC221122, MTCH2, HARBI1, PACSIN3, CD82, DKFZp779M0652, ARHGAP1, FAM180B, LRP4, MDK, MYBPC3, NDUFS3, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PRDM11, PSMC3, SYT13, RAPSN, ALX4, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, NA NA NA NA NA NA NA NA NA LTS-013 MAPK8IP1, TP53I11, ATG13, CKAP5) 0.215568195273856 37 0.0751494007456642 0.859731523408096 3907 0.205312262423333 3 3 0 -7.06664883880641 LTS-013 NA NA NA NA LTS-013 chr11 47640399 48346419 706021 * c(OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, PTPRJ, AGBL2) NA 0 NA 0.830320233006307 794 0.178772786092748 3 NA NA -5.84967383741495 LTS-013 chr11 48346420 48346423 4 * character(0) 0.401 1 NA 3 1 NA NA NA NA NA LTS-013 chr11 48346424 48387090 40667 * c(OR4C3, OR4C45) 0.358038934043236 54 0.0790780117081183 1.96086784622398 116 1.65528850760322 9 6 3 -6.73410978393755 LTS-013 chr11 48387091 48387098 8 * character(0) 0.46 1 NA 2.245 1 NA NA NA NA NA LTS-013 chr11 48387099 48387983 885 * character(0) 0.366035738337944 34 0.0428151209399806 2.06420233547581 56 1.36130080254145 14 9 5 -6.73343801853564 LTS-013 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.931 1 NA NA NA NA NA LTS-013 chr11 48387986 49974649 1586664 * c(FOLH1, OR4C13, TRIM49B, OR4A47, LOC440040, TRIM64C) 0.370048185079509 8 0.0745490011430641 1.00080442526731 364 0.360653729674574 3 2 1 -6.83000854297289 LTS-013 chr11 49974650 51527703 1553054 * c(OR4C46, OR4C13, OR4C12, LOC441601, LOC646813, OR4A5) NA 0 NA 1.03598129560315 93 0.167174112722244 4 NA NA -5.88134326434394 LTS-013 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.329 1 NA 0.878861715217375 21 0.481801030855408 3 3 0 -5.76452263671502 LTS-013 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.407121210790778 5 0.0268048503073604 1.04275149303176 76 0.408975675508819 5 3 2 -6.77531910339479 LTS-013 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.346 1 NA NA NA NA NA LTS-013 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) 0 1 NA 0.401803153453421 68 0.573096036214872 1 1 0 -5.76872787146824 LTS-013 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.006 1 NA NA NA NA NA LTS-013 chr11 55432533 57414554 1982022 * c(PRG3, OR5I1, OR8I2, APLNR, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, SMTNL1, YPEL4, OR5L2, TIMM10, OR10AG1, OR5J2, OR9G4, SLC43A3, OR5F1, OR5AP2, RTN4RL2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, MIR130A, P2RX3, OR8U8, OR9G9, PRG2, SSRP1, SERPING1, OR8J3, NA NA NA NA NA NA NA NA NA LTS-013 TRIM51, SLC43A1, TNKS1BP1, UBE2L6) 0.338815383295769 96 0.0762223432730527 1.11265629124564 2004 0.527311307002214 4 3 1 -6.77840245914434 LTS-013 NA NA NA NA LTS-013 chr11 57414555 57414670 116 * YPEL4 NA 0 NA 0.75 1 NA NA NA NA NA LTS-013 chr11 57414671 60750170 3335500 * c(MIR3162, TMX2-CTNND1, GLYAT, CLP1, PTGDR2, CNTF, CTNND1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, DTX4, MS4A6E, ZDHHC5, GIF, PRPF19, SELENOH, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, MS4A13, TMX2, SLC15A3, MS4A4A, NA NA NA NA NA NA NA NA NA LTS-013 MS4A12, MRPL16, TMEM132A, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, STX3, TCN1, TMEM109, CCDC86, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, GLYATL1, CD6, MS4A1, MS4A3, LPXN) 0.320857994019747 77 0.105543279276371 1.03257220905249 3773 0.378325507912443 4 3 1 -6.78865634120809 LTS-013 NA NA NA NA LTS-013 chr11 60750171 60776186 26016 * CD6 0.312 1 NA 0.953328707969995 19 0.235394318920651 3 3 0 -5.76533716128659 LTS-013 chr11 60776187 75314788 14538602 * c(NAALADL1, KCNE3, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1908, MIR1237, MIR548K, MIR3165, MIR3664, TPBGL, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4696, MIR4691, MIR4692, MIR4488, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, POLD3, CFL1, STARD10, NEU3, YIF1A, EHD1, STIP1, NA NA NA NA NA NA NA NA NA LTS-013 SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, SLCO2B1, CDCA5, RPLP0P2, SLC22A9, SNORD15B, BATF2, SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, HRASLS5, COX8A, CPT1A, XRRA1, C11orf84, CST6, CTSW, GRK2, DDB1, GPHA2, DHCR7, EEF1G, MARK2, CTTN, ESRRA, FAU, MRPL21, TPCN2, VWCE, CYB561A3, PPP1R32, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FEN1, FGF3, FGF4, FKBP2, SHANK2, KDM2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ATG2A, GANAB, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, DEFB108B, PELI3, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, RNF169, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, CHRDL2, ANAPC15, ATL3, C2CD3, TKFC, DKFZP434K028, B3GAT3, PPP1R14B, MYEOV, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, P4HA3, PGM2L1, KLHL35, CCDC88B, TTC9C, SLC22A24, RCOR2, ALG1L9P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, OR2AT4, TBX10, IGHMBP2, INCENP, INPPL1, TMEM179B, TBC1D10C, DNAJB13, MALAT1, KRTAP5-9, KRTAP5-10, SLC22A25, SLC22A10, SPDYC, LIPT2, LRRC10B, GPR152, DOC2GP, FADS1, FADS3, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, SCGB1D4, LTBP3, MIR139, MIR192, MIR194-2, ARRB1, MAP6, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, MIR326, NDUFV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, KCNK4, PC, UBXN1, GAL, KMT5B, TMEM216, COA4, PDE2A, PPME1, CABP2, TRMT112, TMEM138, MRPL48, PGA5, PLCB3, C11orf24, POLR2G, WDR74, SDHAF2, SSH3, HRASLS2, PPP1CA, LAMTOR1, VPS37C, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 RAB3IL1, RAB6A, MAP4K2, RAD9A, RARRES3, RBM4, CCND1, RELA, DPF2, SNORD15A, ROM1, RPS3, RPS6KB2, PGA3, PGA4, FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, MIR611, TM7SF2, UCP2, UCP3, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, METTL12, SF1, ZFPL1, LRFN4, AHNAK, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, CPSF7, ASRGL1, TMEM134, MUS81, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 PAAF1, FOSL1, INTS5, GDPD5, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, RELT, PPFIA1, LGALS12, SERPINH1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, AIP, SYT7, SART1, AP5B1, FIBP, SYT12, ACY3, CD5, MTA2, CD6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, FADS2, PITPNM1, RIN1, TESMIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SPCS2, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.334837574480725 370 0.0836046999320539 1.0354290010165 25442 0.265182823800724 4 3 1 -7.17817529886411 LTS-013 NA NA NA NA LTS-013 chr11 75314789 75428958 114170 * c(MAP6, MOGAT2) 0.388 1 NA 0.950767089768171 93 0.214204062328205 3 3 0 -5.76887054457434 LTS-013 chr11 75428959 76264097 835139 * c(LOC283214, THAP12, EMSY, UVRAG, WNT11, MOGAT2, DGAT2) NA 0 NA 1.0198682858657 703 0.198481677951783 4 NA NA -5.83600971114094 LTS-013 chr11 76264098 76368570 104473 * LRRC32 NA 0 NA 0.618 1 NA NA NA NA NA LTS-013 chr11 76368571 100864367 24495797 * c(NAALAD2, MIR708, KCTD21-AS1, MIR1304, SNORA70E, MIR4300, MIR1260B, RAB30-AS1, LOC100506368, NDUFC2-KCTD14, MIR4490, MIR5579, GRM5-AS1, JRKL-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, CLNS1A, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, DLG2, B3GNT6, FOLH1B, GDPD4, DDIAS, CCDC83, FAM181B, CCDC89, ENDOD1, RAB38, PANX1, FUT4, TSKU, TENM4, LRRC32, CHORDC1, RAB30, AQP11, KCTD21, C11orf54, AAMDC, NA NA NA NA NA NA NA NA NA LTS-013 GRM5, ANKRD42, HEPHL1, VSTM5, GUCY2EP, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, MYO7A, NDUFC2, OMP, NOX4, PAK1, HIKESHI, CWC15, PCF11, RSF1, CNTN5, SYTL2, ANKRD49, ACER3, PRCP, KDM4D, TMEM126B, SMCO4, TRIM49, USP35, CREBZF, CCDC90B, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, KCTD14, SNORA18, SNORA40, SNORD5, THRSP, CAPN5, TYR, ALG8, TAF1D, NARS2, CCDC82, PICALM, FZD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 TMEM133, TMEM126A, MAML2, CEP295, OR7E2P, JRKL, EED, MTMR2, INTS4, MED17, CEP57, GAB2) 0.426604115192689 222 0.0895343664526602 0.6889513586577 10249 0.196938860131397 2 1 1 -6.84037743290736 LTS-013 NA NA NA NA LTS-013 chr11 100864368 100909461 45094 * c(PGR, TMEM133) NA 0 NA 0.721293828557094 192 0.131181017669536 2 NA NA -5.76575185436159 LTS-013 chr11 100909462 101454452 544991 * c(MIR3920, LOC101054525, PGR, TRPC6) 0.299 1 NA 0.941723892603138 223 0.1735350345992 3 3 0 -5.78643746967429 LTS-013 chr11 101454453 113724943 12270491 * c(LOC100132078, WTAPP1, NCAM1-AS1, MIR4301, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, YAP1, CARD16, TMEM123, COLCA2, PIH1D2, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANGPTL5, ANKK1, TIMM8B, GRIA4, GUCY1A2, BIRC2, BIRC3, HSPB2, C11orf53, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, NA NA NA NA NA NA NA NA NA LTS-013 NCAM1, ATM, NPAT, POU2AF1, SLC35F2, RAB39A, BTG4, TTC12, PPP2R1B, C11orf57, ELMOD1, TEX12, CEP126, ARHGAP20, USP28, PTS, CARD18, RDX, AASDHPPT, SDHD, MMP27, LOC643733, LOC643923, CLDN25, C11orf1, SLN, TRPC6, DYNC2H1, ALG9, PDGFD, CUL5, TMPRSS5, CASP1, CASP4, CASP5, BCO2, DCUN1D5, MSANTD4, C11orf70, DIXDC1, ZC3H12C, ALKBH8, ZW10, FDXACB1, MMP20) 0.34952956432198 170 0.0721134581944809 0.915170988539905 8158 0.269796815674391 3 2 1 -6.88118329888509 LTS-013 NA NA NA NA LTS-013 chr11 113724944 113745608 20665 * USP28 0.347 1 NA 0.948113712484137 13 0.165602358152416 3 3 0 -5.76562696495346 LTS-013 chr11 113745609 113853937 108329 * c(HTR3A, USP28, HTR3B) 0.218567125432613 9 0.19708183579417 1.00175490631331 107 0.966437849299129 2 2 0 -6.74209401290381 LTS-013 chr11 113853938 114421747 567810 * c(RBM7, NXPE1, REXO2, HTR3A, NNMT, C11orf71, ZBTB16) 0.448 1 NA 0.886435026545713 421 0.203493480362797 3 3 0 -5.76635598429537 LTS-013 chr11 114421748 116747823 2326076 * c(APOA5, NXPE1, NXPE2, SIK3, CADM1, LINC00900, APOA1, APOA4, APOC3, NXPE4, BUD13, ZPR1) 0.417942365035362 22 0.114362992000883 0.925234990549476 731 0.327709579927286 3 2 1 -6.80086084776632 LTS-013 chr11 116747824 116766889 19066 * SIK3 NA 0 NA 1.586 1 NA NA NA NA NA LTS-013 chr11 116766890 120107411 3340522 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, OAF, CEP164, PHLDB1, SIK3, BACE1, TRIM29, SLC37A4, RNF214, POU2F3, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, NECTIN1, RPS25, SCN2B, SCN4B, NA NA NA NA NA NA NA NA NA LTS-013 ABCG4, CXCR5, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, TMEM25, CBL, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.437520278562154 96 0.108396729088995 1.23923995653039 6380 0.514481776119465 5 3 2 -6.80257630765148 LTS-013 NA NA NA NA LTS-013 chr11 120107412 120107514 103 * POU2F3 0 1 NA 1.92612127104937 3 0.962009528712337 8 8 0 -5.76441014852503 LTS-013 chr11 120107515 120208010 100496 * c(TMEM136, ARHGEF12, POU2F3, LOC649133) 0.427973919647672 6 0.0321683073847537 1.31999099234361 199 0.287425765161469 6 3 3 -6.78795913050077 LTS-013 chr11 120208011 120276771 68761 * ARHGEF12 NA 0 NA 0.947 1 NA NA NA NA NA LTS-013 chr11 120276772 121448183 1171412 * c(TBCEL, ARHGEF12, GRIK4, SC5D, SORL1, TECTA) 0.333004767182218 20 0.089390494608296 0.905618468014352 1098 0.580407730136604 4 3 1 -6.82783032462963 LTS-013 chr11 121448184 121456898 8715 * SORL1 0 1 NA 0.976897617942778 9 0.608219692581919 3 3 0 -5.76450468609848 LTS-013 chr11 121456899 121986376 529478 * c(MIR100HG, MIR125B1, BLID, SORL1) 0.315513979410702 7 0.138428595999801 0.962053745398004 230 0.325149819449874 4 3 1 -6.78655643512388 LTS-013 chr11 121986377 121986475 99 * c(MIR100HG, BLID) NA 0 NA 0.848 1 NA NA NA NA NA LTS-013 chr11 121986476 128786333 6799858 * c(PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, CHEK1, TIRAP, PANX3, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, HEPACAM, FLI1, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, DDX25, HSPA8, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, VWA5A, NA NA NA NA NA NA NA NA NA LTS-013 MIRLET7A2, MIR100, BLID, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, GRAMD1B, PKNOX2, HEPN1, ROBO3, ST3GAL4, SRPRA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, UBASH3B, ESAM, EI24, FEZ1) 0.229100178611032 134 0.0674337856924193 0.725276033931821 5295 0.273278120969714 2 2 0 -6.82354915485446 LTS-013 NA NA NA NA LTS-013 chr11 128786334 128787937 1604 * KCNJ5 0 1 NA 0.939739364348717 29 0.24487742485164 3 3 0 -5.7644398095498 LTS-013 chr11 128787938 128788316 379 * KCNJ5 0.472 1 NA 1.23184502468631 7 0.627234330024995 5 5 0 -5.76441178140815 LTS-013 chr11 128788317 134163193 5374877 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, TMEM45B, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, C11orf44, MIR4697HG, ZBTB44, THYN1, APLP2, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, TP53AIP1, ST14, JAM3, BARX2, ARHGAP32) 0.421260711841116 78 0.0893267749740957 1.02511906961992 3068 0.312510456797259 4 2 2 -6.89240826443199 LTS-013 chr11 134163194 134174914 11721 * GLB1L3 NA 0 NA 0.852 1 NA NA NA NA NA LTS-013 chr11 134174915 134257744 82830 * c(GLB1L3, B3GAT1, GLB1L2) 0.388056622367275 8 0.158108461868066 0.843494169315648 206 0.347709917073768 3 2 1 -6.73559165339135 LTS-013 chr11 134257745 134856681 598937 * c(B3GAT1, LOC283177) NA 0 NA 0.766081053586994 7 0.133772016434501 2 NA NA -5.92095995187391 LTS-013 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.415 1 NA 0.917949061861875 5 0.448322205562027 3 3 0 -5.7645073852723 LTS-013 chr12 176140 3149483 2973344 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CACNA2D4) 0.306843614334864 69 0.0393070464995569 1.11540045589565 3304 0.419796649190036 4 3 1 -6.78221656109801 LTS-013 chr12 3149484 3315433 165950 * c(TSPAN9, TEAD4) 0.139 1 NA 1.12477887531952 15 0.137819170689436 4 4 0 -5.76704760372134 LTS-013 chr12 3315434 3395668 80235 * TSPAN9 0.182752919704258 6 0.0262653129938835 1.09254391724733 110 0.323448945121303 8 7 1 -6.87365350339335 LTS-013 chr12 3395669 5153177 1757509 * c(AKAP3, RAD51AP1, TSPAN9, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, PRMT8, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.150228320770066 31 0.0414209183036576 0.941652437261914 1399 0.339194680531276 3 3 0 -6.85442837909861 LTS-013 chr12 5153178 5153249 72 * KCNA5 NA 0 NA 1.003 1 NA NA NA NA NA LTS-013 chr12 5153250 7653981 2500732 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, KCNA5, LAG3, LTBR, MIR141, MIR200C, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ANO2, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, NA NA NA NA NA NA NA NA NA LTS-013 SPSB2, CD4, CD9, CD163, CD27, CLSTN3, NCAPD2) 0.154902396442405 67 0.0337108450863517 1.04563481867612 4410 0.261739174719578 4 4 0 -6.95037385937422 LTS-013 NA NA NA NA LTS-013 chr12 7653982 9447348 1793367 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.142388816379273 24 0.0683593313923256 0.933498813132169 2046 0.317916836818051 3 3 0 -6.82711968826063 LTS-013 chr12 9447349 9447382 34 * LOC642846 NA 0 NA 1.044 1 NA NA NA NA NA LTS-013 chr12 9447383 9458808 11426 * LOC642846 0.426507784518226 2 0.0374766594028871 0.441001753879278 40 0.421311335031045 0 0 0 -6.75976234838605 LTS-013 chr12 9458809 9581773 122965 * c(DDX12P, LOC642846) 0.268503165818089 4 0.103738051520806 0.986456656278375 99 0.598837051857503 5 4 1 -6.74868568960867 LTS-013 chr12 9581774 9582062 289 * DDX12P NA 0 NA 1.73 1 NA NA NA NA NA LTS-013 chr12 9582063 9717935 135873 * DDX12P 0.287 1 NA 1.61924161087688 112 0.459401182528962 7 7 0 -5.7652980901008 LTS-013 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.609 1 NA NA NA NA NA LTS-013 chr12 9747241 10573094 825854 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.167146559946636 30 0.0335386035939853 0.886968651144181 1101 0.374859361948178 3 3 0 -6.73387681897712 LTS-013 chr12 10573095 10590425 17331 * c(KLRC2, KLRC3) 0.275200251847264 3 0.156513045249696 1.4638252858094 72 0.554081217069796 5 4 1 -6.73427128125282 LTS-013 chr12 10590426 10594820 4395 * character(0) NA 0 NA 0.471 1 NA NA NA NA NA LTS-013 chr12 10594821 10875488 280668 * c(KLRA1P, KLRC1, MAGOHB, STYK1, YBX3) 0.214407425348531 16 0.0560832342743058 0.848726785557512 319 0.292745866120221 2 2 0 -6.80465909896833 LTS-013 chr12 10875489 11174202 298714 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2, YBX3) 0.28 1 NA 0.872934710440337 325 0.169643519150434 3 3 0 -5.77028489574729 LTS-013 chr12 11174203 11214038 39836 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.305301412506995 19 0.0823377014254308 1.02394489888408 70 0.390370418133902 4 3 1 -6.74786824163307 LTS-013 chr12 11214039 11214066 28 * c(PRH1-PRR4, TAS2R46, PRB4) 0.261 1 NA 1.885 1 NA NA NA NA NA LTS-013 chr12 11214067 11285824 71758 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) 0.256593348659617 17 0.0286661821664483 1.52129183637233 59 0.618644876127347 9 7 2 -6.7676673525032 LTS-013 chr12 11285825 11285832 8 * c(PRH1-PRR4, PRB4) NA 0 NA 0.86 1 NA NA NA NA NA LTS-013 chr12 11285833 11461553 175721 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB3, PRB4) 0.252013035982192 5 0.0404845649599943 0.995008022020446 84 0.332039371166417 5 4 1 -6.91187727696809 LTS-013 chr12 11461554 11506893 45340 * c(PRB1, PRB4) 0.083 1 NA 0.952419896412365 17 0.382479651515645 3 3 0 -5.76500193958824 LTS-013 chr12 11506894 20522252 9015359 * c(LOC100506314, LOC100506393, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, PLEKHA5, MANSC1, PRB1, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, PRB2, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, NA NA NA NA NA NA NA NA NA LTS-013 DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3) 0.160066691148769 86 0.0523771182588338 0.968169128453279 4041 0.312262125933722 3 3 0 -7.0257816047654 LTS-013 NA NA NA NA LTS-013 chr12 20522253 20523167 915 * PDE3A NA 0 NA 1.06668178470411 21 0.232411621707611 4 NA NA -5.7644196401437 LTS-013 chr12 20523168 20709577 186410 * PDE3A NA 0 NA 0.664 1 NA NA NA NA NA LTS-013 chr12 20709578 20803549 93972 * PDE3A 0.277 1 NA 0.745299817652356 77 0.164299147419543 2 2 0 -5.77241697167425 LTS-013 chr12 20803550 22489150 1685601 * c(ABCC9, SLCO1B1, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, GOLT1B, PDE3A, SLCO1C1, CMAS, RECQL, ST8SIA1, SLCO1A2, PYROXD1, SPX) 0.264981530392596 32 0.0746727200587185 0.678247035890171 1551 0.203055482042891 2 2 0 -7.01396510180547 LTS-013 chr12 22489151 22672213 183063 * C2CD5 NA 0 NA 0.706959200391022 124 0.148313722009717 2 NA NA -5.76482745666 LTS-013 chr12 22672214 22797533 125320 * c(ETNK1, C2CD5) 0.391 1 NA 0.841960549080771 67 0.125800647073698 3 3 0 -5.78557194586363 LTS-013 chr12 22797534 30906933 8109400 * c(MIR920, MANSC4, MIR4302, RASSF8-AS1, OVCH1-AS1, IPO8, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, SMCO2, OVCH1, ITPR2, KRAS, REP15, LRMP, ERGIC2, TM7SF3, CASC1, CCDC91, ETNK1, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, BCAT1, MRPS35, CAPRIN2, SOX5, C12orf71, BHLHE41, SSPN, TMTC1, PPFIBP1, MED21) 0.384763289503389 107 0.106021746121628 0.886090629502927 3990 0.609782223532912 3 2 1 -6.73663359250418 LTS-013 chr12 30906934 34175508 3268575 * c(LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, SYT10, H3F3C, TSPAN11, YARS2, PKP2, KIAA1551, FAM60A, BICD1, CAPRIN2, FLJ13224, ALG10) 0.422265037103533 71 0.0784433538201377 1.21769711470791 1850 0.363985675090217 5 3 2 -6.82284678415281 LTS-013 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 1.28490441879609 55 0.319577533628383 5 NA NA -5.7644154842321 LTS-013 chr12 38710341 38710459 119 * character(0) 0.417 1 NA 0.860651957434992 3 0.272657905319712 3 3 0 -5.7644120545268 LTS-013 chr12 38710460 43858529 5148070 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, PPHLN1, KIF21A, ADAMTS20, ZCRB1) 0.344498530782646 52 0.107586429179473 1.31049711921604 2781 0.371774580162404 5 3 2 -6.92040444360664 LTS-013 chr12 43858530 43860422 1893 * ADAMTS20 NA 0 NA 1.111 1 NA NA NA NA NA LTS-013 chr12 43860423 49958761 6098339 * c(PCED1B-AS1, TROAP, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, ANO6, ARID2, DDN, KCNH3, ANP32D, LINC00935, RND1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, ARF3, CCDC184, LALBA, LINC00938, DBX2, NELL2, DHH, PLEKHA8P1, IRAK4, FKBP11, HDAC7, PFKM, SLC38A2, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, TWF1, RNY5, SPATS2, SNORA2A, SNORA2B, NA NA NA NA NA NA NA NA NA LTS-013 SNORA2C, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, PUS7L, RACGAP1P, TMEM117, TUBA1C, CCDC65, ENDOU, CCNT1, PCED1B, SCAF11, DDX23) 0.376684158670939 53 0.127427354870258 1.22146272519977 6233 0.279939182413981 5 3 2 -6.93697476786735 LTS-013 NA NA NA NA LTS-013 chr12 49958762 49959246 485 * MCRS1 NA 0 NA 1.03 1 NA NA NA NA NA LTS-013 chr12 49959247 49978065 18819 * c(MCRS1, FAM186B) 0.21 1 NA 0.928913582406588 55 0.161050888082583 3 3 0 -5.76484002331931 LTS-013 chr12 49978066 50232496 254431 * c(BCDIN3D-AS1, BCDIN3D, PRPF40B, NCKAP5L, TMBIM6, FAM186B, FMNL3) 0.461 1 NA 0.975130107129404 715 0.209472460593455 3 3 0 -5.78658390654739 LTS-013 chr12 50232497 51442944 1210448 * c(BCDIN3D-AS1, MIR1293, LARP4, FAM186A, BCDIN3D, FAIM2, METTL7A, LETMD1, GPD1, LOC283332, TMPRSS12, RACGAP1, AQP2, AQP5, AQP6, ASIC1, ATF1, SLC11A2, LIMA1, DIP2B, HIGD1C, SMARCD1, COX14, CERS5) 0.444004663112592 48 0.0396472924853443 0.944003638015347 2124 0.224995745784391 4 2 2 -7.27452811039521 LTS-013 chr12 51442945 51453637 10693 * LETMD1 0.373 1 NA 0.941478892364221 47 0.125089581221818 3 3 0 -5.76523517837378 LTS-013 chr12 51453638 52467691 1014054 * c(GALNT6, GRASP, CELA1, LETMD1, NR4A1, ANKRD33, FIGNL2, BIN2, POU6F1, SMAGP, ATG101, SCN8A, TFCP2, CSRNP2, ACVR1B, ACVRL1, SLC4A8, DAZAP2) 0.408237505965332 25 0.0966204257218248 0.954964981702189 1506 0.257527978882753 3 2 1 -6.80815401925739 LTS-013 chr12 52467692 54679043 2211352 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, SP7, KRT74, KRT72, KRT80, KRT78, EIF4B, TNS2, CBX5, SMUG1, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, NA NA NA NA NA NA NA NA NA LTS-013 KRT85, KRT86, LOC400043, MIR196A2, FLJ12825, PCBP2, KRT76, CSAD, ATP5G2, PFDN5, PRR13, CALCOCO1, RARG, C12orf10, ATG101, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, KRT75, ESPL1) 0.400728164618052 112 0.102322743977116 1.25639803224647 4787 0.758220288130522 5 3 2 -6.736850887478 LTS-013 NA NA NA NA LTS-013 chr12 54679044 54685873 6830 * HNRNPA1 NA 0 NA 1.65 1 NA NA NA NA NA LTS-013 chr12 54685874 54955324 269451 * c(GTSF1, COPZ1, ZNF385A, NCKAP1L, ITGA5, MIR148B, NFE2, PDE1B, GPR84) 0.398155241398886 12 0.147339100737247 1.46123169677325 660 0.508755840564782 5 3 2 -6.74302654956232 LTS-013 chr12 54955325 54969870 14546 * PDE1B 0.47 1 NA 1.43228387080665 69 0.334467029049033 6 6 0 -5.76457242159435 LTS-013 chr12 54969871 56078189 1108319 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, METTL7B, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.477814149466563 35 0.028309573164799 1.48553680899398 831 0.722053676514685 6 3 3 -8.58505157937629 LTS-013 chr12 56078190 56079084 895 * c(METTL7B, ITGA7) 0.493 1 NA 1.55462599202158 19 0.268436331981134 6 6 0 -5.76441997262895 LTS-013 chr12 56079085 58216989 2137905 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MARS, METTL1, MIP, MMP19, MYL6, MYO1A, NAB2, NA NA NA NA NA NA NA NA NA LTS-013 NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.463708050231462 106 0.0516261954931422 1.4676767197245 7753 0.305473999684803 6 3 3 -7.15291159094781 LTS-013 NA NA NA NA LTS-013 chr12 58216990 58217021 32 * CTDSP2 0.245 1 NA 1.717 1 NA NA NA NA NA LTS-013 chr12 58217022 58217780 759 * CTDSP2 0.240403738071922 9 0.11040380428228 1.40738423744868 24 0.193911113470931 6 5 1 -6.73520263063557 LTS-013 chr12 58217781 58217927 147 * CTDSP2 0.468 1 NA 1.32406176252566 7 0.0980883955079975 5 5 0 -5.76441333352058 LTS-013 chr12 58217928 68549313 10331386 * c(MIR548Z, LOC100506844, CTDSP2, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, MIR26A2, TMBIM4, AVPR1A, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, ATP23, SLC16A7, HELB, USP15) 0.430516491012018 66 0.106976054441058 1.49128025660179 4280 0.539009147712615 6 3 3 -6.74018488697564 LTS-013 chr12 68549314 68551685 2372 * IFNG NA 0 NA 1.143 1 NA NA NA NA NA LTS-013 chr12 68551686 69645056 1093371 * c(LOC100130075, SNORA70G, LOC100507250, CPSF6, CPM, IFNG, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B) 0.455180979115201 7 0.0405585995813465 1.31956479546548 801 0.287807539572162 6 3 3 -7.29510710179872 LTS-013 chr12 69645057 69645756 700 * CPSF6 NA 0 NA 1.87 1 NA NA NA NA NA LTS-013 chr12 69645757 74935094 5289338 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, LRRC10, LYZ, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, LGR5) 0.444999616430193 48 0.0972084019221349 1.49086923712947 2870 0.393280399085762 6 3 3 -6.77524437939357 LTS-013 chr12 74935095 78225311 3290217 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, ATXN7L3B, BBS10, CAPS2, NAV3) 0.434175621279592 11 0.0628394780372975 1.33402734489233 1515 0.315546964034472 5 3 2 -6.8707111166669 LTS-013 chr12 78225312 79611374 1386063 * c(SYT1, NAV3) 0.4767420590008 2 0.00212132034355964 1.57494892165063 318 0.439856377524795 6 3 3 -21.7261262327128 LTS-013 chr12 79611375 79693400 82026 * SYT1 NA 0 NA 1.38717562287354 27 0.248152455207763 5 NA NA -5.76781711287697 LTS-013 chr12 79693401 79747267 53867 * SYT1 NA 0 NA 1.178 1 NA NA NA NA NA LTS-013 chr12 79747268 80168773 421506 * c(MIR1252, PPP1R12A, PAWR, SYT1) 0 1 NA 1.06104968141691 309 0.361761562218766 4 4 0 -5.7668985962102 LTS-013 chr12 80168774 89742951 9574178 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, DUSP6, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, SLC6A15, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, C12orf29, RASSF9) 0.291073087753816 41 0.119896225453718 1.11004218851726 2831 0.367170976715948 4 3 1 -6.76658277844701 LTS-013 chr12 89742952 89743026 75 * DUSP6 NA 0 NA 0.756 1 NA NA NA NA NA LTS-013 chr12 89743027 101133763 11390737 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, SLC17A8, LINC01619, POC1B, GAS2L3, MRPL42, HAL, APAF1, LINC00936, C12orf74, LTA4H, LUM, MIR135A2, LINC00615, PLEKHG7, MIR331, ATP2B1, CEP83, CDK17, SLC25A3, NA NA NA NA NA NA NA NA NA LTS-013 VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TMPO, NR2C1, UBE2N, USP44, EEA1, GALNT4, CRADD, SOCS2, NR1H4) 0.30151373271175 110 0.099666746210811 1.04262519494929 6010 0.280909133515032 4 3 1 -6.986637992959 LTS-013 NA NA NA NA LTS-013 chr12 101133764 101133843 80 * ANO4 NA 0 NA 1.132 1 NA NA NA NA NA LTS-013 chr12 101133844 101413927 280084 * ANO4 0.305 1 NA 0.553626247274649 39 0.254044732371848 1 1 0 -5.79040454273493 LTS-013 chr12 101413928 101430818 16891 * ANO4 NA 0 NA 1.198 1 NA NA NA NA NA LTS-013 chr12 101430819 104481949 3051131 * c(MIR3652, SPIC, ANO4, SLC5A8, TTC41P, UTP20, LINC00485, HCFC2, IGF1, C12orf42, ARL1, ASCL1, MYBPC1, SYCP3, PAH, CCDC53, NT5DC3, PMCH, PARPBP, DRAM1, STAB2, CHPT1, TDG, HSP90B1, C12orf73, NUP37, GNPTAB, GLT8D2) 0.3061269931719 66 0.0776483691442984 1.05326413948674 2903 1.17927787268199 4 3 1 -6.7492768838018 LTS-013 chr12 104481950 104487179 5230 * HCFC2 NA 0 NA 0.786 1 NA NA NA NA NA LTS-013 chr12 104487180 106718401 2231222 * c(MIR3922, CKAP4, C12orf45, ALDH1L2, KIAA1033, TCP11L2, HCFC2, C12orf75, NFYB, EID3, CHST11, APPL2, TXNRD1, SLC41A2, NUAK1) 0.290008486655208 28 0.0434477579623813 0.966908275464668 1524 0.286876031319664 4 3 1 -7.22921026411221 LTS-013 chr12 106718402 106718712 311 * TCP11L2 0.243 1 NA 1.13186409086522 9 0.133668225261071 4 4 0 -5.76441871830599 LTS-013 chr12 106718713 110944290 4225578 * c(USP30-AS1, LOC100287944, LOC100505978, MIR4497, ARPC3, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, RAD9B, DAO, ISCU, CORO1C, TCP11L2, MYO1H, IFT81, FAM216A, ACACB, MMAB, TMEM119, C12orf76, MVK, ATP2A2, GPN3, GLTP, ANAPC7, VPS29, SSH1, RIC8B, SVOP, POLR3B, TRPV4, RFX4, SELPLG, LOC728739, UNG, MTERF2, KCTD10, TCHP, USP30, FAM222A, FAM222A-AS1, ANKRD13A, UBE3B, TMEM263, WSCD2, SART3, NA NA NA NA NA NA NA NA NA LTS-013 GIT2) 0.210229011562624 60 0.0948518321198762 0.962607151284305 5249 0.471123126098376 3 3 0 -6.90316753131948 LTS-013 NA NA NA NA LTS-013 chr12 110944291 110957767 13477 * RAD9B NA 0 NA 0.890092521663878 29 0.170913829006938 3 NA NA -5.76444525303024 LTS-013 chr12 110957768 110959976 2209 * RAD9B NA 0 NA 1.048 1 NA NA NA NA NA LTS-013 chr12 110959977 110974890 14914 * c(RAD9B, PPTC7) 0.371 1 NA 1.03729536625204 131 0.186652761030302 4 4 0 -5.76528997468677 LTS-013 chr12 110974891 113269541 2294651 * c(LINC01405, SH2B3, TRAFD1, ERP29, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, MYL2, MAPKAPK5-AS1, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, HVCN1, MAPKAPK5, ADAM1A, TMEM116) 0.328187605359968 35 0.0878093140290488 1.11460288518711 2579 0.323074901183559 4 3 1 -6.74358694636837 LTS-013 chr12 113269542 113269597 56 * RPH3A 0.404 1 NA 2.366 1 NA NA NA NA NA LTS-013 chr12 113269598 116398416 3128819 * c(SDS, SDSL, IQCD, DTX1, PLBD2, RPH3A, MED13L, TBX5-AS1, CFAP73, OAS1, OAS2, OAS3, TPCN1, LHX5, TBX5, TBX3, DDX54, SLC8B1, RASAL1, RITA1, RBM19) 0.360943229693202 64 0.0766011090697405 1.21168537015391 2070 0.398857973439431 5 3 2 -6.98497683395814 LTS-013 chr12 116398417 116398423 7 * MED13L NA 0 NA 0.994 1 NA NA NA NA NA LTS-013 chr12 116398424 120124578 3726155 * c(LINC00173, MIR4472-2, CIT, LINC00934, CCDC60, FBXO21, MED13L, FBXW8, HSPB8, KSR2, TMEM233, NOS1, PEBP1, TAOK3, VSIG10, TESC, PRKAB1, WSB2, RFC5, MAP1LC3B2, SUDS3, MIR620, C12orf49, SRRM4, RNFT2, HRK) 0.370310337341792 31 0.0820828194405615 1.13169297414395 2365 0.339566096678352 4 2 2 -6.95540853399434 LTS-013 chr12 120124579 120125715 1137 * CIT 0 1 NA 1.23814463765054 23 0.484112610621584 5 5 0 -5.76441693228912 LTS-013 chr12 120125716 120565555 439840 * c(MIR1178, GCN1, RAB35, CIT, BICDL1) 0.179737736939115 11 0.188390551780072 1.15726951776248 452 0.594077453651254 4 4 0 -6.76547423996132 LTS-013 chr12 120565556 120576265 10710 * GCN1 0.33 1 NA 1.18353703768347 65 0.300150509520448 4 4 0 -5.76479390487855 LTS-013 chr12 120576266 122332701 1756436 * c(PXN-AS1, NRAV, MIR4498, MIR4700, CAMKK2, GCN1, SPPL3, COX6A1, TMEM120B, SETD1B, SIRT4, MORN3, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, PSMD9, PXN, RPLP0, C12orf43, HNF1A, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, CABP1, MLEC, RNF10) 0.374613206265425 101 0.0712087643398752 1.13877100525648 2971 0.290331499694004 4 2 2 -6.97575116779775 LTS-013 chr12 122332702 122337783 5082 * PSMD9 NA 0 NA 0.60551784047548 39 0.280354397850403 2 NA NA -5.76523393670987 LTS-013 chr12 122337784 122340827 3044 * PSMD9 NA 0 NA 1.338 1 NA NA NA NA NA LTS-013 chr12 122340828 122690784 349957 * c(WDR66, MLXIP, LRRC43, IL31, PSMD9, BCL7A, B3GNT4) 0.390237996044558 24 0.0526957358778691 1.14453871297128 640 0.263792215353233 5 3 2 -6.82992303295807 LTS-013 chr12 122690785 122692820 2036 * c(DIABLO, VPS33A, B3GNT4) 0.333 1 NA 1.21777963442881 43 0.165953084805885 5 5 0 -5.76459704487032 LTS-013 chr12 122692821 122761710 68890 * c(DIABLO, CLIP1, VPS33A) 0.229886336586726 9 0.149715656421691 1.08326908277977 260 0.382812815456917 6 5 1 -6.76307274990075 LTS-013 chr12 122761711 122817507 55797 * CLIP1 0.446 1 NA 1.11179430280236 62 0.321991415581364 4 4 0 -5.76444796653904 LTS-013 chr12 122817508 123186178 368671 * c(CLIP1-AS1, HCAR2, ZCCHC8, CLIP1, RSRC2, KNTC1) 0.38470947576609 10 0.0534307443747927 1.16631010485734 578 0.35030282298161 5 3 2 -6.84186536539566 LTS-013 chr12 123186179 123186802 624 * HCAR2 0.342 1 NA 0.48197770200027 39 0.629433529573336 1 1 0 -5.76441153024405 LTS-013 chr12 123186803 123186843 41 * HCAR2 NA 0 NA 1.162 1 NA NA NA NA NA LTS-013 chr12 123186844 124320088 1133245 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, HCAR2, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65) 0.38028838238768 14 0.0693792333625706 1.16378083982364 2425 0.275762407874526 5 3 2 -6.91686385224562 LTS-013 chr12 124320089 124322984 2896 * DNAH10 NA 0 NA 1.209 1 NA NA NA NA NA LTS-013 chr12 124322985 133812415 9489431 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, ZNF891, ZNF268, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, NA NA NA NA NA NA NA NA NA LTS-013 ANHX, AACS, SNORA49, UBC, ZNF10, ZNF140, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.383880897048259 193 0.0799602195595 1.2370045486463 6340 0.410032493060785 5 3 2 -6.85688565752537 LTS-013 NA NA NA NA LTS-013 chr12 133812416 133812708 293 * ANHX NA 0 NA 1.0528711902425 7 0.0955627442847791 4 NA NA -5.76444665423407 LTS-013 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.21 1 NA 0.750605413403677 3 0.135356319886932 2 2 0 -5.81532317787819 LTS-013 chr13 19600476 24695845 5095370 * c(ANKRD26P3, LINC00421, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.160363062962643 38 0.0667053829020425 0.833813741782617 2437 0.285500746103519 3 3 0 -6.95220667642923 LTS-013 chr13 24695846 24736548 40703 * SPATA13 NA 0 NA 0.966 1 NA NA NA NA NA LTS-013 chr13 24736549 30339019 5602471 * c(PAN3-AS1, MIR2276, MTUS2-AS1, SPATA13-AS1, CDK8, CDX2, WASF3, PARP4, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, FLT1, FLT3, MTUS2, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, C1QTNF9, PDX1, TPTE2P6, RASL11A, SHISA2, ATP5EP2, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, CENPJ, RNF17, RNF6, RPL21, SNORA27, TPTE2P1, URAD, SLC7A1, MTMR6, NUP58) 0.182591574193651 90 0.0769186349625004 1.00411492635588 3964 0.402306126339498 3 3 0 -6.9942331008903 LTS-013 chr13 30339020 34404866 4065847 * c(LINC00426, MINOS1P1, TEX26-AS1, LINC00297, LINC00398, LINC00423, STARD13-AS, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, ALOX5AP, HMGB1, LINC00544, UBL3, RFC3, ZAR1L, BRCA2, KATNAL1, MEDAG, STARD13, N4BP2L1, KL) 0.186273444619682 27 0.0614011609344853 0.807178963970316 2297 0.451396050139632 3 3 0 -6.92753375617702 LTS-013 chr13 34404867 41240256 6835390 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00457, LINC00571, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, DCLK1) 0.187009501293436 70 0.0725081975803847 0.8730544977423 2742 0.253101986842907 3 3 0 -6.83536342574211 LTS-013 chr13 41240257 50590423 9350167 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, TPTE2P5, MIR5006, LINC00563, LINC00441, MED4-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, RCBTB2, WBP4, AKAP11, ARL11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, NUFIP1, SUGT1P3, SIAH3, KCNRG, MLNR, RGCC, MED4, DNAJC15, GTF2F2, HTR2A, NA NA NA NA NA NA NA NA NA LTS-013 KPNA3, KCTD4, SERP2, LCP1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, SNORA31, MIR621, TPT1, NAA16, RUBCNL, CDADC1, CAB39L, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.173199574795998 92 0.0619401943264337 0.814019116246402 5320 0.611896075449896 3 3 0 -6.88600593646121 LTS-013 NA NA NA NA LTS-013 chr13 50590424 50656582 66159 * c(TRIM13, DLEU1, KCNRG, MIR16-1, DLEU2) 0.234 1 NA 0.862078023642234 76 0.195862404262556 3 3 0 -5.76634448076555 LTS-013 chr13 50656583 53420826 2764244 * c(MIR759, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, MRPS31P5, DLEU1, SUGT1, LECT1, WDFY2, HNRNPA1L2, ST13P4, DLEU7, FAM124A, TPTE2P3, INTS6, CKAP2, LINC00282, GUCY1B2, NEK5, ALG11, NEK3, PCDH8, VPS36, ATP7B, THSD1, LINC00371, SERPINE3, RNASEH2B, DHRS12, CCDC70, DLEU2, UTP14C) 0.207642441128518 29 0.0461524300338515 0.795477275856486 1695 0.188290534476004 2 2 0 -7.42321087788705 LTS-013 chr13 53420827 67802709 14381883 * c(MIR1297, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, OLFM4, PCDH17, OR7E156P, PCDH8, PCDH9, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3) 0.163194147612636 10 0.0751065169535167 0.902382770711185 781 0.275267557058119 3 3 0 -6.73570844619284 LTS-013 chr13 70274717 76433397 6158681 * c(LINC00381, LINC00348, PIBF1, KLF12, DACH1, COMMD6, DIS3, LINC00347, LMO7, MZT1, KLHL1, ATXN8OS, CTAGE11P, KLF5, UCHL3, BORA, TBC1D4) 0.224501204556862 28 0.0444792770248807 0.695771782918462 1553 0.185242442784096 2 2 0 -6.76411406757693 LTS-013 chr13 76433398 84455878 8022481 * c(MIR3665, RBM26-AS1, LINC00331, LINC00446, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, SPRY2, SLITRK1, KCTD12, CLN5, SLAIN1, EDNRB, MYCBP2, FBXL3, LMO7, POU4F1, NDFIP2, RBM26, BTF3P11, LMO7DN, ACOD1, RNF219, SCEL) 0.157615454449482 15 0.0574765376562679 0.806323514252352 1742 0.207966934809867 3 3 0 -7.86496303791638 LTS-013 chr13 84455879 84456000 122 * SLITRK1 NA 0 NA 1.33 1 NA NA NA NA NA LTS-013 chr13 84456001 93879338 9423338 * c(MIR4500, GPC6, GPC5-AS1, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00559, SLITRK1, LINC00410, GPC5, SLITRK5, MIR19B1, MIR17HG, MIR4500HG, MIR622, SLITRK6) 0.172 1 NA 0.973567366351772 298 0.186246956413227 3 3 0 -6.62842822517532 LTS-013 chr13 93879339 93879343 5 * GPC6 NA 0 NA 0.709 1 NA NA NA NA NA LTS-013 chr13 93879344 115030714 21151371 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR4306, MIR3170, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4705, GPC6, MIR548AS, LINC00565, GPC6-AS2, LINC00443, CLDN10-AS1, COL4A2-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, ABCC4, TUBGCP3, TNFSF13B, SOX21, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, RNF113B, LINC00343, GPR180, DCT, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, NA NA NA NA NA NA NA NA NA LTS-013 RASA3, DZIP1, MYO16, ATP11A, MCF2L, DOCK9, TGDS, NALCN, GAS6, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, GPR18, UBAC2, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, ATP4B, PCCA, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, RAP2A, GRK1, CCDC168, GAS6-AS1, SLC10A2, SLC15A1, SOX1, MIR623, TFDP1, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, CARS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 GRTP1, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, PROZ, ARHGEF7, CDC16, CLDN10, TEX30, ITGBL1, TM9SF2) 0.213695861101515 182 0.0662875788218668 0.706973258862662 9008 0.222471429273323 2 2 0 -6.75478876619408 LTS-013 NA NA NA NA LTS-013 chr13 115030715 115092817 62103 * c(CHAMP1, UPF3A, CDC16) NA 0 NA 0.647403607732587 137 0.0954972281704306 2 NA NA -5.78971265837141 LTS-013 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.271 1 NA 1.6720832098544 11 1.81388203986518 7 7 0 -5.76444525293685 LTS-013 chr14 20201973 20404749 202777 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.304143031873788 9 0.171172265406649 1.72322355023706 192 0.853925653037277 8 6 2 -6.73892161798063 LTS-013 chr14 20404750 20404847 98 * OR4K1 NA 0 NA 1.54 1 NA NA NA NA NA LTS-013 chr14 20404848 22322690 1917843 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-013 TEP1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.329088663311941 107 0.0632982990336525 1.30333341191333 3425 0.595050609071676 4 3 1 -6.84392165143726 LTS-013 NA NA NA NA LTS-013 chr14 22322691 22337119 14429 * character(0) 0.241 1 NA 1.22097752861348 8 0.921921585989983 5 5 0 -5.76444967655382 LTS-013 chr14 22337120 22471694 134575 * character(0) 0.192720431956559 3 0.158247696139101 1.40136098361677 126 0.698303620915807 7 6 1 -6.74363353288194 LTS-013 chr14 22471695 22930038 458344 * character(0) 0.168076893392093 7 0.163002921387785 1.57102505214701 371 0.762104433638557 8 7 1 -6.75619237115411 LTS-013 chr14 22930039 22942890 12852 * character(0) 0.3 1 NA 1.74101969550131 53 0.348482997942313 7 7 0 -5.76444844572636 LTS-013 chr14 22942891 22991095 48205 * character(0) 0.304521404200144 10 0.078946958283535 1.5497299803353 199 0.353885902614724 8 6 2 -6.76388423286254 LTS-013 chr14 22991096 22992443 1348 * character(0) NA 0 NA 1.334 1 NA NA NA NA NA LTS-013 chr14 22992444 35099099 12106656 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, AP4S1, EGLN3, DTD2, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, HECTD1, HEATR5A, NGDN, LRP10, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, NA NA NA NA NA NA NA NA NA LTS-013 LINC01551, ARHGAP5, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, ARHGAP5-AS1, AJUBA, ZFHX2, AP1G2, SLC7A7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CARMIL3, PPP1R3E, CPNE6, AKAP6, REC8) 0.313736272189417 135 0.0650410110024183 1.32200192693858 9221 0.321445168039214 5 4 1 -7.01773753759096 LTS-013 NA NA NA NA LTS-013 chr14 35099100 35099247 148 * SNX6 0 1 NA 0.877531288253038 5 0.222584141393766 3 3 0 -5.76441129014422 LTS-013 chr14 35099248 35592337 493090 * c(CFL2, BAZ1A, IGBP1P1, FAM177A1, PPP2R3C, SNX6, SRP54, KIAA0391) 0.276717766747722 6 0.0576945982451275 1.28727332202158 477 0.275601547671529 5 4 1 -6.74243051726731 LTS-013 chr14 35592338 35592421 84 * KIAA0391 NA 0 NA 1.07 1 NA NA NA NA NA LTS-013 chr14 35592422 45759593 10167172 * c(SNORD127, SLC25A21-AS1, LOC100288846, MIR4503, PTCSC3, LINC00609, SEC23A, NA, C14orf28, TRAPPC6B, MIPOL1, LRFN5, CLEC14A, FKBP3, FAM179B, RALGAPA1, SFTA3, FBXO33, NKX2-8, LINC00639, FOXA1, MIA2, NFKBIA, PAX9, MBIP, PNN, KLHL28, PRPF39, MIS18BP1, PSMA6, FANCM, SSTR1, NKX2-1, FSCB, BRMS1L, INSM2, GEMIN2, SLC25A21, KIAA0391) 0.189739571542932 33 0.0792934113010506 1.15468025931303 3244 0.370742342567457 4 4 0 -7.08932572930593 LTS-013 chr14 47120209 50070295 2950087 * c(MIR548Y, LINC00648, LRR1, RPL10L, MDGA2, RPS29, NEMF) 0.241442901451485 3 0.189807797521598 0.76299896239774 239 0.206248229218665 2 2 0 -7.0337282996001 LTS-013 chr14 50070296 50074502 4207 * c(LRR1, NEMF) 0.33 1 NA 0.661549631751755 11 0.0702826759981046 2 2 0 -5.76608387123839 LTS-013 chr14 50074503 60588029 10513527 * c(KTN1-AS1, OTX2-AS1, MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, L3HYPDH, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, C14orf37, FRMD6-AS1, ABHD12B, LINC01599, NID2, ATG14, DAAM1, SAMD4A, KLHDC2, GCH1, TIMM9, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, MGAT2, OTX2, ATL1, NIN, DACT1, JKAMP, C14orf166, NA NA NA NA NA NA NA NA NA LTS-013 POLE2, GNG2, TMEM260, FBXO34, DNAAF2, C14orf105, AP5M1, ACTR10, PSMA3, PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, PYGL, ARID4A, SAV1, RPL36AL, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, GNPNAT1, BMP4, SOS2, STYX, CCDC175, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, NEMF, MAPK1IP1L, KIAA0586, DLGAP5) 0.292092011973908 120 0.0775718691792017 0.797406957797233 7996 0.232813999590137 2 2 0 -8.77520269716069 LTS-013 NA NA NA NA LTS-013 chr14 60588030 60590926 2897 * PCNX4 NA 0 NA 0.661 1 NA NA NA NA NA LTS-013 chr14 60590927 60764099 173173 * c(DHRS7, PPM1A, PCNX4) 0.303718304375825 17 0.0591085118783292 0.750190647782942 339 0.184608940777036 4 3 1 -7.18343157046459 LTS-013 chr14 60764100 60765170 1071 * PPM1A 0.245 1 NA 0.799578775143675 23 0.19834106449652 3 3 0 -5.7646393064691 LTS-013 chr14 60765171 69254558 8489388 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, WDR89, GPHB5, RDH12, PPP1R36, SLC38A6, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, RAB15, ARG2, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, RDH11, ATP6V1D, SIX4, PIGH, PPM1A, PPP2R5E, PRKCH, RHOJ, PLEKHH1, TRMT5, RAD51B, MPP5, FUT8-AS1, NA NA NA NA NA NA NA NA NA LTS-013 LINC00643, SIX1, SNAPC1, SPTB, ZFP36L1, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5) 0.237848280991905 96 0.080736787387902 0.758559078464581 5868 0.213235082658792 2 2 0 -7.41681150841826 LTS-013 NA NA NA NA LTS-013 chr14 69254559 70530633 1276075 * c(LOC100289511, ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.192121584182318 10 0.0348815455824742 1.07727525406345 1339 0.277124429759828 3 3 0 -7.32290945604032 LTS-013 chr14 70530634 70633342 102709 * SLC8A3 NA 0 NA 1.599 1 NA NA NA NA NA LTS-013 chr14 70633343 70936840 303498 * c(SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SLC8A3, ADAM21) 0.337 1 NA 1.3675234456432 211 0.31253713803245 5 5 0 -5.76926297127492 LTS-013 chr14 70936841 71109276 172436 * c(MED6, TTC9, ADAM20P1, ADAM20) 0.163 1 NA 1.35600295998614 149 0.3415700348383 5 5 0 -5.76601759183036 LTS-013 chr14 71109277 73137584 2028308 * c(LOC145474, PCNX1, TTC9, SIPA1L1, SNORD56B, MAP3K9, DPF3, RGS6) 0.117670178658569 17 0.0669983537989159 1.36942715372741 1073 0.397845818217868 5 5 0 -6.75441994560952 LTS-013 chr14 73137585 73137664 80 * DPF3 NA 0 NA 0.942 1 NA NA NA NA NA LTS-013 chr14 73137665 88654361 15516697 * c(MIR1260A, MIR4505, MIR4709, DIO2-AS1, LINC00911, BATF, NPC2, AHSA1, ACOT2, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, SAMD15, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, DCAF4, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, VSX2, HEATR4, LTBP2, ALDH6A1, COQ6, FCF1, PGF, ZFYVE1, KCNK10, VRTN, NA NA NA NA NA NA NA NA NA LTS-013 FLVCR2, GPATCH2L, YLPM1, PSEN1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, RBM25, VIPAS39, SEL1L, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, BBOF1, DPF3, SLIRP, DNAL1, RPS6KL1, GPR65, STON2, CIPC, NUMB, ALKBH1, EIF2B2, PAPLN, ELMSAN1, LIN52, NEK9, PNMA1, NRXN3, SPTLC2, ENTPD5, ACYP1, AREL1) 0.162910437632262 107 0.0639054182861984 1.08339705097845 9155 0.55237834121391 4 4 0 -6.83587889422258 LTS-013 NA NA NA NA LTS-013 chr14 88654362 93182605 4528244 * c(SNORA11B, FBLN5, PTPN21, FOXN3, TTC8, TC2N, SLC24A4, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, LGMN, KCNK13, PSMC1, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11) 0.175332430216579 57 0.069369736924703 1.03016911972846 3856 0.328560995381573 4 4 0 -7.01536502489812 LTS-013 chr14 93182606 93183643 1038 * LGMN NA 0 NA 1.276 1 NA NA NA NA NA LTS-013 chr14 93183644 106311988 13128345 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, NA NA NA NA NA NA NA NA NA LTS-013 LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 TECPR2, GOLGA5) 0.169429139641493 302 0.0605482339454541 1.09985024571186 13333 0.48998949924073 4 4 0 -6.89888896526994 LTS-013 NA NA NA NA LTS-013 chr14 106311989 106318194 6206 * character(0) NA 0 NA 0.809 1 NA NA NA NA NA LTS-013 chr14 106318195 106791394 473200 * c(LINC00226, ADAM6, FAM30A) 0.169733969090175 10 0.0332505639049927 0.945868764614538 341 0.26959106174484 3 3 0 -6.74523572222138 LTS-013 chr14 106791395 106805323 13929 * character(0) NA 0 NA 1.312 1 NA NA NA NA NA LTS-013 chr14 106805324 107013129 207806 * LINC00221 0.152632701382334 4 0.00976387901058453 1.16288386879163 94 0.832650867718971 10 9 1 -6.81529858516246 LTS-013 chr14 107013130 107013201 72 * character(0) 0.236 1 NA 1.0831959125508 2 0.619425540319416 4 4 0 -5.76441016042194 LTS-013 chr14 107013202 107283157 269956 * character(0) 0.271141006149594 10 0.0323434692016797 1.34604586634334 108 0.98818588082609 5 4 1 -6.73455315811177 LTS-013 chr15 20169987 20445987 276001 * character(0) 0.274 1 NA 0.708988880254795 23 0.46721038248521 2 2 0 -5.76451954477237 LTS-013 chr15 20445988 22369619 1923632 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.261042077329963 20 0.116487123751941 0.8145539266695 190 0.534485377741779 2 2 0 -6.91503336745544 LTS-013 chr15 22369620 22382320 12701 * LOC727924 NA 0 NA 0.214 1 NA NA NA NA NA LTS-013 chr15 22382321 28517436 6135116 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-013 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, OR4N4, GOLGA6L1, GOLGA8IP, SNORD109B, SNORD115-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, OR4N3P, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, REREP3, GOLGA8S, SNRPN, SNORD116-19, LOC727924, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.272722131126852 44 0.102452278376856 0.665898681746654 2596 0.200129470200259 2 2 0 -7.14376188964285 LTS-013 NA NA NA NA LTS-013 chr15 28517437 28518162 726 * HERC2 0.25 1 NA 0.559708773550592 6 0.158035966370528 1 1 0 -5.76462495092128 LTS-013 chr15 28518163 32404107 3885945 * c(LOC100288637, LOC100289656, CHRNA7, OTUD7A, FAN1, FAM189A1, DKFZP434L187, LOC283710, APBA2, HERC2P10, MIR211, TRPM1, HERC2P9, WHAMMP2, KLF13, MTMR10, NSMCE3, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, HERC2, CHRFAM7A, ARHGAP11B) 0.201257097890486 24 0.0826264511810994 0.640676611008706 1490 0.235023587722319 2 2 0 -7.06914707087838 LTS-013 chr15 32404108 32404339 232 * CHRNA7 NA 0 NA 0.51 1 NA NA NA NA NA LTS-013 chr15 32404340 32908459 504120 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) 0.177 1 NA 0.495578686580059 94 0.245537409650471 1 1 0 -5.76497717811593 LTS-013 chr15 32908460 32908464 5 * ARHGAP11A NA 0 NA 0.711 1 NA NA NA NA NA LTS-013 chr15 32908465 41864659 8956195 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, GOLGA8A, RTF1, LPCAT4, NUTM1, RPAP1, GCHFR, GREM1, RPUSD2, FAM98B, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, PLCB2, DLL4, INO80, PPP1R14D, NA NA NA NA NA NA NA NA NA LTS-013 ZNF770, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, SCG5, C15orf56, PHGR1, SPINT1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, C15orf41, ZFYVE19, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6) 0.213852579964813 180 0.0805456860539374 0.647933118662405 7862 0.240038872210778 2 2 0 -7.25341355658156 LTS-013 NA NA NA NA LTS-013 chr15 41864660 41871537 6878 * TYRO3 NA 0 NA 1.10468959749911 56 0.416103007663983 4 NA NA -5.76441059884737 LTS-013 chr15 41871538 41961082 89545 * MGA NA 0 NA 0.639 1 NA NA NA NA NA LTS-013 chr15 41961083 45059709 3098627 * c(JMJD7, PLA2G4B, MIR1282, MIR4310, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, MAPKBP1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, HYPK, GANC, TMEM87A, TUBGCP4, PLA2G4D, PDIA3, EHD4, MAP1A, MFAP1, CATSPER2P1, SPTBN5, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, EIF3J-AS1, MIR626, MIR627, TP53BP1, PIN4P1, WDR76, TMEM62, NA NA NA NA NA NA NA NA NA LTS-013 SPG11, ELL3, CAPN3, FRMD5, EIF3J, JMJD7-PLA2G4B, SNAP23, TGM5, PPIP5K1, LCMT2) 0.218577767362676 58 0.0835551482250994 0.653988156064063 6447 0.186430813358588 2 2 0 -6.97668908254875 LTS-013 NA NA NA NA LTS-013 chr15 45059710 45123849 64140 * TRIM69 NA 0 NA 1.03191694175162 39 0.54008317822925 4 NA NA -5.7649459794448 LTS-013 chr15 45123850 45127366 3517 * character(0) NA 0 NA 0.398 1 NA NA NA NA NA LTS-013 chr15 45127367 48787470 3660104 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.230036352419592 28 0.0768415534631122 0.674773925304267 2486 0.210053816298994 2 2 0 -6.82431558227237 LTS-013 chr15 48787471 50793301 2005831 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, EID1, GABPB1, GALK2, HDC, USP50, SHC4, FLJ10038, DTWD1, ATP8B4, USP8, COPS2, SECISBP2L) 0.244552010242173 30 0.0504105102159251 0.618205069225659 1824 0.156417174582905 2 2 0 -7.61415364986616 LTS-013 chr15 50793302 50821988 28687 * USP50 NA 0 NA 0.25 1 NA NA NA NA NA LTS-013 chr15 50821989 51058070 236082 * c(USP50, TRPM7, SPPL2A) 0.245256172729088 3 0.232513082069232 0.288500120544986 372 0.088910091981362 0 0 0 -7.08544257483065 LTS-013 chr15 51058071 51200809 142739 * character(0) NA 0 NA 0.727 1 NA NA NA NA NA LTS-013 chr15 51200810 68439052 17238243 * c(LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, MIR2116, MIR4311, IQCH-AS1, DYX1C1-CCPG1, MIR4713, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, LACTB, DIS3L, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, C15orf61, CYP19A1, DYX1C1, MGC15885, LCTL, ZNF609, DMXL2, AP4E1, DAPK2, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, NA NA NA NA NA NA NA NA NA LTS-013 TMOD2, ANXA2, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MNS1, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.231881508074195 303 0.0659157721091268 0.644470021981998 14251 0.196025801448699 2 2 0 -8.22604876735365 LTS-013 NA NA NA NA LTS-013 chr15 68439053 68445897 6845 * PIAS1 NA 0 NA 1.124 1 NA NA NA NA NA LTS-013 chr15 68445898 68483919 38022 * c(PIAS1, CALML4) 0 1 NA 0.993345167882323 55 0.287458451982476 3 3 0 -5.76708686835091 LTS-013 chr15 68483920 68486097 2178 * CALML4 0.48 1 NA 1.01379335443263 49 0.186409285628982 4 4 0 -5.76465951292203 LTS-013 chr15 68486098 74611043 6124946 * c(NR2E3, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, LOXL1, LINC00593, MYO9A, NEO1, PKM, PML, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, THAP10, PARP6, ISLR2, BBS4, CELF6, RPLP1, STRA6, MIR629, MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, NA NA NA NA NA NA NA NA NA LTS-013 HEXA-AS1, CCDC33, CD276, ANP32A, ADPGK, CALML4, STOML1, KIF23) 0.440551680935427 74 0.0964708857792646 1.07442942758343 4812 0.832515287895824 4 2 2 -6.76485015155298 LTS-013 NA NA NA NA LTS-013 chr15 74611044 83241876 8630833 * c(DNM1P35, NA, UBE2Q2P2, MIR4313, NA, ST20-MTHFS, MIR4514, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CLK3, TMEM266, HYKK, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, SAXO2, IDH3A, TMC3, NA NA NA NA NA NA NA NA NA LTS-013 IL16, IREB2, ANKRD34C, ADAMTS7P1, ST20, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, SCAPER, ZFAND6, RPP25, COMMD4, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, CEMIP, PTPN9, ABHD17C, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, CPEB1, LOC645752, SH2D7, LOC646938, GOLGA6L10, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR549A, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, STARD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 LINC00597, MEX3B, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A, ARNT2) 0.452512258329307 140 0.0758082895374241 1.0305620199916 7685 0.280791335059101 4 2 2 -7.1116893185811 LTS-013 NA NA NA NA LTS-013 chr15 83241877 83332056 90180 * c(CPEB1-AS1, CPEB1, AP3B2) 0 1 NA 1.01756092238609 57 0.25847055333704 4 4 0 -5.76930112547896 LTS-013 chr15 83332057 85360469 2028413 * c(UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, SEC11A, CPEB1-AS1, ACTG1P17, LOC338963, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, HDGFRP3, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, SH3GL3, BNC1, EFTUD1P1, SCARNA15, AP3B2, FAM103A1, WDR73, HOMER2, ZNF592) 0.368177322614062 13 0.228820470439836 1.02528581475015 1553 0.231867829649232 4 3 1 -6.87131752618485 LTS-013 chr15 85360470 85382193 21724 * c(ALPK3, LOC642423) 0.455 1 NA 1.10968188206402 19 0.440279111367361 4 4 0 -5.76441548744245 LTS-013 chr15 85382194 86311779 929586 * c(AKAP13, PDE8A, ALPK3, LOC642423, KLHL25, SLC28A1) 0.467904124797018 30 0.0273163880751329 1.02970195182549 950 0.209267352156539 4 2 2 -8.25854556662364 LTS-013 chr15 86311780 94841848 8530069 * c(LINC00930, MIR1276, MIR1179, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, AGBL1, C15orf32, HAPLN3, MESP2, LINC00052, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, NTRK3-AS1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, MIR7-2, MIR9-3, MAN2A2, MFGE8, TTLL13P, NTRK3, FURIN, NGRN, RHCG, PLIN1, POLG, NA NA NA NA NA NA NA NA NA LTS-013 DET1, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, KLHL25, AEN, CRTC3, MRPS11, AGBL1-AS1, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.419818454333133 159 0.0932986802615977 1.19480113828044 6013 0.338200362625319 4 2 2 -7.02532161015781 LTS-013 NA NA NA NA LTS-013 chr15 94841849 98516438 3674590 * c(MIR1469, SPATA8-AS1, LINC00924, SPATA8, LINC01197, LOC440311, MCTP2, NR2F2-AS1, NR2F2, ARRDC4, LINC00923) 0.441268100415782 30 0.0486809457874292 1.81232686190207 581 0.681203800017505 8 4 4 -6.86281866559469 LTS-013 chr15 98516439 101189896 2673458 * c(MIR4714, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, PRKXP1, LINS1, TTC23, HSP90B2P, ARRDC4) 0.450447565560853 62 0.0557924119490694 2.03383723756709 1620 0.480217557499622 8 4 4 -6.94707489950945 LTS-013 chr15 101189897 101418104 228208 * ASB7 NA 0 NA 2.00105529089165 48 0.343245768803373 9 NA NA -5.76701405332404 LTS-013 chr15 101418105 101527635 109531 * c(ALDH1A3, LRRK1) 0.382 1 NA 1.6405065937685 177 0.419703136335948 7 7 0 -5.76486455931809 LTS-013 chr15 101527636 102003445 475810 * c(LOC100507472, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1) 0.350628005532637 11 0.124254577380473 1.64144981642111 583 0.405435648615553 6 4 2 -6.75358614002473 LTS-013 chr15 102003446 102029587 26142 * PCSK6 NA 0 NA 4.153 1 NA NA NA NA NA LTS-013 chr15 102029588 102315205 285618 * c(TARSL2, PCSK6, TM2D3) 0.360777294805876 15 0.0393716117211857 2.45160219299749 281 0.702897003033454 9 6 3 -6.7554695674611 LTS-013 chr15 102315206 102315549 344 * character(0) NA 0 NA 1.171 1 NA NA NA NA NA LTS-013 chr15 102315550 102516492 200943 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) 0.427869270439378 2 0.0360624458405139 1.71503712764672 66 0.338348590949732 8 4 4 -6.7774285757018 LTS-013 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.479 1 NA NA NA NA NA LTS-013 chr16 81704 81779 76 * character(0) 0.397 1 NA 0.334 1 NA NA NA NA NA LTS-013 chr16 81780 2653090 2571311 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-013 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.32309566529286 245 0.0728376028809476 0.986536520332956 8212 0.238967815399135 4 3 1 -7.03945040394159 LTS-013 NA NA NA NA LTS-013 chr16 2653091 2653094 4 * PDPK1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-013 chr16 2653095 2732840 79746 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.312291091611728 2 0.0176776695296637 0.658809788768756 81 0.750692334358223 4 3 1 -6.8152616103229 LTS-013 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.805 1 NA NA NA NA NA LTS-013 chr16 2747831 3119790 371960 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, CLDN6, CLDN9, PKMYT1, IL32) 0.336675726536982 36 0.0484656644947806 1.03441399785891 1161 0.261970933715885 4 3 1 -6.83386044175781 LTS-013 chr16 3119791 3131602 11812 * character(0) NA 0 NA 0.378 1 NA NA NA NA NA LTS-013 chr16 3131603 14968958 11837356 * c(MIR365A, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, VASN, ADCY9, RMI2, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, NOMO1, CARHSP1, TMEM186, ZNF500, RSL1D1, OR1F2P, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, BCAR4, MEFV, CIITA, SMIM22, NA NA NA NA NA NA NA NA NA LTS-013 NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, PMM2, RBFOX1, ZSCAN32, PPL, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, NPIPA3, C16orf90, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PLA2G10, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, DNAJA3, TIGD7, SNX29, LITAF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SEC14L5) 0.311047412124587 183 0.0851945530637659 0.968022007080581 7300 0.441424307575004 4 3 1 -7.27883331034372 LTS-013 NA NA NA NA LTS-013 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.152 1 NA NA NA NA NA LTS-013 chr16 15068593 15123936 55344 * PDXDC1 0.369692181854877 5 0.0531723612415322 1.28754225067313 113 0.249735512747854 6 4 2 -6.7537985810961 LTS-013 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-013 chr16 15125636 19871434 4745799 * c(NPIPA5, MIR3179-2, MIR3180-4, COQ7, NTAN1, FOPNL, IQCK, ITPRIPL2, PDXDC1, SMG1, ARL6IP1, MPV17L, NOMO2, PKD1P1, ABCC6, KNOP1, NOMO3, ABCC1, MYH11, GDE1, GPRC5B, SYT17, RRN3, NDE1, C16orf62, MIR484, RPS15A, XYLT1, ABCC6P1, CLEC19A, TMC5, TMC7, C16orf45, KIAA0430, CCP110) 0.308021279131333 42 0.10816907228856 0.988389536170238 2943 0.348346241765969 4 3 1 -6.99455916134634 LTS-013 chr16 19871435 20043330 171896 * c(GPR139, GPRC5B) 0.352 1 NA 1.07882952943225 59 0.545401445186438 4 4 0 -5.76453893842564 LTS-013 chr16 20043331 20370816 327486 * c(GPR139, PDILT, GP2, UMOD) 0.0736731212445618 9 0.128343289657076 1.08496248413684 229 1.18848514416756 7 7 0 -6.76925376291883 LTS-013 chr16 20370817 20410488 39672 * PDILT 0.368 1 NA 0.980270894869017 49 0.185245344300563 3 3 0 -5.76944570059691 LTS-013 chr16 20410489 21170763 760275 * c(ERI2, ACSM1, ACSM2A, DCUN1D3, PDILT, ACSM2B, ACSM5, DNAH3, THUMPD1, TMEM159, LYRM1, ACSM3, LOC81691) 0.328849158359706 22 0.0860918164856618 0.964440177653865 1125 0.262374997491792 4 3 1 -6.85491450753276 LTS-013 chr16 21170764 21172212 1449 * TMEM159 NA 0 NA 0.852 1 NA NA NA NA NA LTS-013 chr16 21172213 28608392 7436180 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, SGF29, SLC5A11, CLN3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, SBK1, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, POLR3E, PRKCB, APOBR, UBFD1, NA NA NA NA NA NA NA NA NA LTS-013 TMEM159, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, DCTN5, COG7, HS3ST4, HS3ST2) 0.32535768234897 74 0.148469975349077 0.791716277047962 5259 0.314375053097265 3 2 1 -7.48442622866818 LTS-013 NA NA NA NA LTS-013 chr16 28608393 28631399 23007 * SULT1A1 0.329 1 NA 0.436168564681851 46 0.0875625628648393 1 1 0 -5.79866330887279 LTS-013 chr16 28631400 28634378 2979 * SULT1A1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-013 chr16 28634379 28978355 343977 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, ATP2A1, SULT1A1, TUFM, RABEP2, NFATC2IP, CD19) 0.349 1 NA 0.871241697967183 673 0.173073906640599 3 3 0 -5.77175493693476 LTS-013 chr16 28978356 28997997 19642 * c(LAT, SPNS1) 0.407 1 NA 0.870826172189117 109 0.165483216789727 3 3 0 -5.76488291550026 LTS-013 chr16 28997998 30532941 1534944 * c(SLX1B-SULT1A4, MIR4518, CD2BP2, CDIPT, CORO1A, PRRT2, TMEM219, C16orf92, SEPT1, ZNF48, ALDOA, SEPHS2, QPRT, KCTD13, ASPHD1, TBC1D10B, SEZ6L2, LAT, C16orf54, INO80E, MYLPF, ITGAL, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, ZNF771, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, LOC613038, RRN3P2, ZG16, SPN, SULT1A3, TBX6, DCTPP1, GDPD3, PAGR1, SLC7A5P1, YPEL3, FAM57B, DOC2A, HIRIP3, NA NA NA NA NA NA NA NA NA LTS-013 TAOK2, MVP) 0.404933377224059 38 0.0876162629343618 0.813048297095315 2341 0.189732477471424 3 2 1 -7.02721598054754 LTS-013 NA NA NA NA LTS-013 chr16 30532942 30535297 2356 * ITGAL NA 0 NA 0.986 1 NA NA NA NA NA LTS-013 chr16 30535298 31374535 839238 * c(MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, SRCAP, STX1B, ZNF689, ZNF785, ZNF688, PRSS36, CTF1, ZNF629, FUS, PYDC1, FBXL19-AS1, PYCARD, PRSS53, ITGAM, ITGAX, TRIM72, PHKG2, FBXL19, PRSS8, FBRS, ZNF747, SNORA30, STX4, LOC730183, PRR14, VKORC1, ZNF768, ZNF668, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.455941600693646 13 0.0681708825729081 0.994211883965963 2697 0.206457278626691 4 2 2 -7.01943850081445 LTS-013 chr16 31374536 31384554 10019 * ITGAX 0.37 1 NA 0.930461665006389 29 0.241740227182866 3 3 0 -5.76452276626034 LTS-013 chr16 31384555 31987905 603351 * c(CLUHP3, ZNF267, ZNF720, COX6A2, ZNF843, ITGAD, ITGAX, YBX3P1, AHSP, C16orf58, SLC5A2, TGFB1I1, ARMC5) 0.366034811113843 13 0.174686165480431 0.9608312594171 814 0.420469867928568 3 2 1 -6.74685636376247 LTS-013 chr16 31987906 31993291 5386 * character(0) NA 0 NA 1.215 1 NA NA NA NA NA LTS-013 chr16 31993292 33962387 1969096 * c(SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.33040139300711 72 0.101265157098844 1.40410044685702 296 0.746468839315594 6 4 2 -6.80504106939666 LTS-013 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.728 1 NA NA NA NA NA LTS-013 chr16 33965501 34267389 301889 * character(0) 0.324860860300699 5 0.185333483213369 0.637863780146914 43 0.908234194555275 1 1 0 -6.75619115890424 LTS-013 chr16 34267390 34682380 414991 * c(LINC01566, UBE2MP1) NA 0 NA 0.8292727500734 95 0.224623892694194 3 NA NA -5.79744233483228 LTS-013 chr16 46508169 46533934 25766 * ANKRD26P1 0 1 NA 1.01758159516816 29 0.457154704279985 4 4 0 -5.76485693351201 LTS-013 chr16 46533935 48201432 1667498 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, GPT2, ABCC11, MYLK3, ABCC12) 0.296487624073859 9 0.225760935504795 0.987512505709127 1298 0.370025675907772 4 3 1 -6.82203686852747 LTS-013 chr16 48201433 48204078 2646 * ABCC11 0.464 1 NA 1.08850078667408 5 0.294180726765028 4 4 0 -5.76441209890798 LTS-013 chr16 48204079 52118349 3914271 * c(LINC00919, LOC100507577, MIR548AE2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, CNEP1R1, BRD7, C16orf97, HEATR3, SALL1, NOD2, PAPD5, SIAH1, LONP2, ABCC11, NKD1, CBLN1, N4BP1) 0.479636395608373 15 0.0226705178801099 0.958046415087181 1739 0.219334314964773 4 2 2 -10.1891112029607 LTS-013 chr16 52118350 52472727 354378 * c(LINC00919, TOX3) NA 0 NA 0.62 1 NA NA NA NA NA LTS-013 chr16 52472728 64978158 12505431 * c(MIR3935, CDH8, IRX5, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, ARL2BP, DKFZP434H168, AMFR, TOX3, GNAO1, GOT2, LOC283856, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, NA NA NA NA NA NA NA NA NA LTS-013 ZNF319, BBS2, RBL2, CCL17, CCL22, CX3CL1, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, CHD9, NLRC5, DRC7, CAPNS2, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.381028353610017 157 0.0871731388250689 0.821327003241745 6169 0.239363044627216 3 2 1 -7.67059272250891 LTS-013 NA NA NA NA LTS-013 chr16 64978159 64978232 74 * character(0) 0.441 1 NA 0.803242917362088 3 0.10866922287382 3 3 0 -5.76445827953293 LTS-013 chr16 64978233 70796515 5818283 * c(CDH3, SNORD111B, VAC14-AS1, CDH5, MIR1538, MIR1972-1, LINC00920, SMG1P7, LOC100506083, CKLF-CMTM1, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, TMEM208, NA NA NA NA NA NA NA NA NA LTS-013 FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.388029615535657 168 0.100829459719114 0.810083954086059 8488 0.617849122542824 3 2 1 -6.83504258907032 LTS-013 NA NA NA NA LTS-013 chr16 70796516 70869690 73175 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.833968955094575 121 0.155083312276197 3 NA NA -5.77504462914732 LTS-013 chr16 70869691 70871572 1882 * HYDIN NA 0 NA 1.111 1 NA NA NA NA NA LTS-013 chr16 70871573 70884524 12952 * HYDIN 0.475 1 NA 0.93074336186539 19 0.237075665864359 3 3 0 -5.76456430921166 LTS-013 chr16 70884525 71165847 281323 * HYDIN 0.449171003050183 73 0.0513375287380043 1.00264512079414 491 0.427177815100791 4 2 2 -6.93725948779993 LTS-013 chr16 71165848 71167220 1373 * HYDIN 0.446 2 5.55111512312578e-17 0.976311487272598 30 0.545101547009109 0 0 0 -204.712920145111 LTS-013 chr16 71167221 71218926 51706 * HYDIN 0.367 1 NA 0.85599702261002 31 0.159043701304802 3 3 0 -5.76751433300168 LTS-013 chr16 71218927 77240500 6021574 * c(SYCE1L, SNORA70D, LINC01568, MIR4719, CHST4, CFDP1, GABARAPL2, TMEM170A, CTRB1, ZFP1, AP1G1, DHODH, LDHD, MLKL, MON1B, PHLPP2, ADAT1, CHST5, GLG1, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, KARS, CHST6, CTRB2, ZFHX3, CLEC18B, TERF2IP, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, PMFBP1, ZNRF1, CNTNAP4, MARVELD3, BCAR1, DHX38, IST1) 0.379701727990203 80 0.0951779678792327 0.816504316370595 3982 0.210557010681258 3 2 1 -7.42328634232353 LTS-013 chr16 77240501 83813514 6573014 * c(LOC100129617, SYCE1L, MIR3182, MIR4720, CDH13, CLEC3A, MPHOSPH6, PKD1L2, C16orf46, CDYL2, ADAMTS18, ATMIN, GCSH, NUDT7, HSD17B2, MAF, WWOX, PLCG2, BCO1, CENPN, CMC2, VAT1L, CMIP, GAN, DYNLRB2, SDR42E1) 0.40555725795147 82 0.114745073086609 0.654852247474273 1969 0.260271614520358 2 1 1 -6.99525611211853 LTS-013 chr16 83813515 83886498 72984 * c(CDH13, HSBP1) 0.476 1 NA 0.75123288330422 41 0.224953659184481 2 2 0 -5.7686334168743 LTS-013 chr16 83886499 90050880 6164382 * c(VPS9D1-AS1, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, SNAI3, FAM92B, IRF8, CTU2, APRT, NA NA NA NA NA NA NA NA NA LTS-013 PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, CA5A, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.443458837530878 252 0.0602357112203085 0.655645280478978 6757 0.206871618483217 2 1 1 -7.18467772572222 LTS-013 NA NA NA NA LTS-013 chr16 90050881 90161242 110362 * c(URAHP, PRDM7, AFG3L1P, GAS8, GAS8-AS1, DBNDD1) NA 0 NA 0.658686164032531 260 0.166589417896318 2 NA NA -5.77344549716502 LTS-013 chr17 6004 65632 59629 * c(DOC2B, RPH3AL) 0 1 NA 0.956214175688967 70 0.266064844055422 3 3 0 -5.76625285900534 LTS-013 chr17 65633 5487316 5421684 * c(C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, PRPF8, KIF1C, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, ENO3, NLRP1, RAP1GAP2, CAMTA2, ZZEF1, CLUH, SMG6, SHPK, ALOX15, RNF167, OR1A2, PELP1, GP1BA, LOC284009, VMO1, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, SMTNL2, RFLNB, ITGAE, NA NA NA NA NA NA NA NA NA LTS-013 GLTPD2, INCA1, SCIMP, OR3A4P, C17orf97, MED11, MIR132, MIR212, MIR22, ARRB2, MNT, ASPA, MYO1C, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, DERL2, GLOD4, ANKFY1, SERPINF1, INPP5K, PFN1, PITPNA, PLD2, SERPINF2, SLC52A1, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, CXCL16, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, C1QBP, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ZNF232, MIS12, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, ZNF594, SPATA22, MIR22HG, SCARF1, TM4SF5, USP6, RABEP1, RPH3AL, SPAG7, SGSM2) 0.163595265181474 253 0.0586620522135928 0.961805863942859 8566 0.3218200248289 3 3 0 -6.87040062413703 LTS-013 NA NA NA NA LTS-013 chr17 5487317 5983964 496648 * c(NLRP1, WSCD1, LOC339166) NA 0 NA 0.792 1 NA NA NA NA NA LTS-013 chr17 5983965 7012073 1028109 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, MIR4520-1, MIR4520-2, ALOX15P1, CLEC10A, SLC16A11, FBXO39, SLC16A13, WSCD1, AIPL1, ALOX12, ALOX12P2, BCL6B, SLC13A5, ASGR2, MED31, FAM64A, XAF1, MIR497, PITPNM3, TEKT1, TXNDC17, KIAA0753) 0.164866941979109 25 0.0863842771187751 0.813297394270317 1223 0.330313135409648 3 3 0 -6.79127819677669 LTS-013 chr17 7012074 7017420 5347 * ASGR2 0.175 1 NA 0.822826335491451 5 0.303637118942991 3 3 0 -5.76469095589585 LTS-013 chr17 7017421 7761512 744092 * c(TMEM256-PLSCR3, SENP3-EIF4A1, SAT2, GABARAP, CHRNB1, RPL29P2, CYB5D1, CLDN7, DNAH2, KCTD11, DLG4, DVL2, EFNB3, EIF5A, C17orf74, FGF11, KDM6B, CTDNEP1, ELP5, TMEM256, SENP3, SNORA67, TMEM102, GPS2, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, ATP1B2, YBX2, POLR2A, WRAP53, PLSCR3, NLGN2, ZBTB4, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, TP53, PHF23, NAA38, NEURL4, TNK1, TNFSF13, NA NA NA NA NA NA NA NA NA LTS-013 TNFSF12, TMEM88, FXR2, MPDU1, CD68, ACAP1) 0.194957730793748 80 0.0476013974372043 0.80207714880535 3402 0.194425100280956 2 2 0 -7.04865538186812 LTS-013 NA NA NA NA LTS-013 chr17 7761513 7825574 64062 * c(CHD3, CYB5D1, LOC284023, SCARNA21, KCNAB3) 0.112 1 NA 0.817940111130399 299 0.179374807620643 3 3 0 -5.77535379642712 LTS-013 chr17 7825575 11757556 3931982 * c(LOC100128288, LINC00675, MIR4314, NA, MAGOH2P, MIR4521, TMEM220-AS1, CNTROB, USP43, KRBA2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, ARHGEF15, PIK3R5, ALOX12B, ALOX15B, LINC00324, RANGRF, GUCY2D, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PER1, PFAS, BORCS6, ADPRM, TRAPPC1, ALOXE3, RCVRN, RPL26, SCO1, RNF222, PIRT, VAMP2, CTC1, NDEL1, TMEM107, HES7, GAS7, MYH13, NA NA NA NA NA NA NA NA NA LTS-013 KCNAB3, AURKB, GLP2R, NTN1, STX8) 0.153394473200689 88 0.0892639938948544 0.825399963804128 4554 0.265524569272616 3 3 0 -6.98968512710747 LTS-013 NA NA NA NA LTS-013 chr17 11757557 11827112 69556 * DNAH9 0.296 1 NA 0.810059299524111 72 0.165802237158114 3 3 0 -5.78125373040685 LTS-013 chr17 11827113 13400189 1573077 * c(MIR744, DNAH9, LINC00670, ELAC2, MAP2K4, ZNF18, MYOCD, ARHGAP44, HS3ST3A1) 0.191061084651951 19 0.0615830158100211 0.841982152949826 721 0.220163123024074 3 3 0 -6.90513539901998 LTS-013 chr17 13400190 13446920 46731 * HS3ST3A1 NA 0 NA 0.535 1 NA NA NA NA NA LTS-013 chr17 13446921 15469204 2022284 * c(TVP23C-CDRT4, MIR4731, COX10-AS1, COX10, CDRT15, TVP23C, CDRT4, PMP22, TEKT3, MGC12916, CDRT7, CDRT15P1, HS3ST3B1, HS3ST3A1) 0.194834014788194 15 0.0826381671303682 0.734509673290173 643 0.315453601078687 2 2 0 -6.79650875794915 LTS-013 chr17 15469205 15476394 7190 * TRIM16 NA 0 NA 0.417114918848081 64 0.233404644183845 1 NA NA -5.7670604199201 LTS-013 chr17 15476395 16649035 1172641 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.183830349370884 9 0.112577750910204 0.764143986341897 1385 0.488763794964829 2 2 0 -6.80144498159703 LTS-013 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 1.194 1 NA NA NA NA NA LTS-013 chr17 16664882 16836298 171417 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) 0.37 1 NA 1.22200147986561 39 0.404887295425901 5 5 0 -5.7667798089558 LTS-013 chr17 16836299 16836397 99 * TNFRSF13B NA 0 NA 0.932 1 NA NA NA NA NA LTS-013 chr17 16836398 18380217 1543820 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, KRT17P5, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, LGALS9C, SREBF1, MIR33B, TOP3A, KRT16P1, GID4, DRC3, COPS3, ATPAF2) 0.227093983274363 56 0.055531315021814 0.759438734099923 2715 0.175734079761503 2 2 0 -6.94987032916454 LTS-013 chr17 18380218 18387136 6919 * LGALS9C NA 0 NA 0.497 1 NA NA NA NA NA LTS-013 chr17 18387137 18456685 69549 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.482621980784354 2 0.0176776695296637 0.288942194625854 59 0.218874967310153 0 0 0 -10.537907343724 LTS-013 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 1.301 1 NA NA NA NA NA LTS-013 chr17 18483256 21117589 2634334 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, TMEM11, SPECC1, ULK2) 0.243206392132115 51 0.062329541669307 0.743503061734791 2556 0.221937880981702 2 2 0 -6.96340643167399 LTS-013 chr17 21117590 21194779 77190 * c(NATD1, MAP2K3, TMEM11) NA 0 NA 0.684026784528869 34 0.140369616489864 2 NA NA -5.76574501073563 LTS-013 chr17 21194780 21194785 6 * MAP2K3 NA 0 NA 0.936 1 NA NA NA NA NA LTS-013 chr17 21194786 21199037 4252 * MAP2K3 0.485 1 NA 0.979916085545762 10 0.260777917435933 3 3 0 -5.76468032349869 LTS-013 chr17 21199038 21318586 119549 * c(KCNJ12, MAP2K3) 0.402174407133878 39 0.0547564845893926 0.939775541478428 141 0.364950679239824 5 3 2 -6.79102277673844 LTS-013 chr17 21318587 21318595 9 * KCNJ12 0.318 1 NA 2.772 1 NA NA NA NA NA LTS-013 chr17 21318596 21318743 148 * KCNJ12 0.30745692131596 2 0.021920310216783 1.11948521138463 8 0.738009569721152 14 10 4 -6.73498654538008 LTS-013 chr17 21318744 21318770 27 * KCNJ12 0.272 1 NA 1.487 1 NA NA NA NA NA LTS-013 chr17 21318771 21319786 1016 * KCNJ12 0.296050435040371 23 0.0827130140168223 1.52512671341653 51 0.833980688166875 18 13 5 -6.73392865694157 LTS-013 chr17 21319787 21319802 16 * KCNJ12 NA 0 NA 0.778 1 NA NA NA NA NA LTS-013 chr17 21319803 22066835 747033 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.328686129816578 17 0.0639442542145799 0.855488786200123 225 0.423989108594017 4 3 1 -6.9034073239354 LTS-013 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.668 1 NA NA NA NA NA LTS-013 chr17 25620838 25951929 331092 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.176 1 NA 0.957282293818334 240 0.185523846100996 3 3 0 -5.78616721283909 LTS-013 chr17 25951930 27975077 2023148 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, NA NA NA NA NA NA NA NA NA LTS-013 FOXN1, CORO6, SSH2, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.139834089027231 56 0.0467686763861144 1.00447077626805 3972 0.245646592265815 4 4 0 -6.89605837662489 LTS-013 NA NA NA NA LTS-013 chr17 27975078 27975182 105 * SSH2 NA 0 NA 0.889 1 NA NA NA NA NA LTS-013 chr17 27975183 34433730 6458548 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-013 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.15252953897913 108 0.0673597378648388 0.960764777672245 6025 0.336480089982047 3 3 0 -6.90445098925222 LTS-013 NA NA NA NA LTS-013 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.101 1 NA NA NA NA NA LTS-013 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.10930466932485 39 0.0704921775696816 0 NA NA -10.7325609464113 LTS-013 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.998 1 NA NA NA NA NA LTS-013 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.149820113439015 21 0.0281316632318545 0.980367144253286 1544 0.945515466987294 4 4 0 -6.86466162869021 LTS-013 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.299 1 NA NA NA NA NA LTS-013 chr17 36351756 36398345 46590 * LOC440434 0.283246846439042 4 0.16085474814254 0.278994538394004 71 0.144989715863703 0 0 0 -7.14291591358684 LTS-013 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.967 1 NA NA NA NA NA LTS-013 chr17 36421727 41341767 4920041 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, RAMP2-AS1, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, STARD3, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, KRT28, KRT24, ZNF385C, ERBB2, EZH1, CASC3, NA NA NA NA NA NA NA NA NA LTS-013 IKZF3, KCNH4, GAST, G6PC, KRT23, KAT2A, TUBG2, CCR10, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, MSL1, KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, MLLT6, LOC440434, GPR179, NAGLU, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ACLY, NEUROD2, FBXO47, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, KLHL11, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, DHX58, PLEKHH3, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, PGAP3, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.15358912503712 210 0.0474186274016081 1.00606526394474 10946 0.272874698428775 4 4 0 -7.10361601535058 LTS-013 NA NA NA NA LTS-013 chr17 41341768 41342480 713 * NBR1 NA 0 NA 0.773 1 NA NA NA NA NA LTS-013 chr17 41342481 41424101 81621 * c(LINC00854, TMEM106A, NBR1) 0.120945202159196 6 0.0253410076095381 0.893189917072142 130 0.198070725308436 5 5 0 -6.92534360226005 LTS-013 chr17 41424102 41465877 41776 * LINC00910 0.437 1 NA 0.885527362935288 23 0.276204133423376 3 3 0 -5.7644985657772 LTS-013 chr17 41465878 42254281 788404 * c(LINC00910, HDAC5, MIR2117, LSM12, CD300LG, NAGS, DHX8, DUSP3, ETV4, FAM215A, C17orf105, ASB16-AS1, ARL4D, MEOX1, MPP2, MPP3, SOST, PPY, PYY, C17orf53, TMEM101, G6PC3, ASB16) 0.314978834913234 9 0.150236018022015 0.858766760697532 1063 0.204706922352963 3 2 1 -6.87572939147254 LTS-013 chr17 42254282 42272586 18305 * c(ASB16-AS1, ATXN7L3, TMUB2, ASB16) 0.138 1 NA 0.828946045898039 67 0.17312849767549 3 3 0 -5.76689896628349 LTS-013 chr17 42272587 44172146 1899560 * c(MAP3K14-AS1, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, CCDC43, KIF18B, GPATCH8, FZD2, GFAP, FAM171A2, MEIOC, GRN, ITGA2B, CCDC103, ADAM11, NMT1, SLC25A39, HIGD1B, ATXN7L3, SLC4A1, UBTF, FMNL1, ACBD4, DCAKD, DBF4B, MAP3K14, EFTUD2) 0.190191783805556 16 0.0422211933354171 0.845448623724745 2883 0.257933435883048 3 3 0 -6.96778959022664 LTS-013 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.515 1 NA NA NA NA NA LTS-013 chr17 44248158 44782233 534076 * character(0) 0.184527166362244 2 0.0106066017177982 0.480572811523037 113 0.170440971259684 3 3 0 -10.6631667705922 LTS-013 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.943 1 NA NA NA NA NA LTS-013 chr17 44788332 45196190 407859 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.126807941937888 4 0.0386037562939152 0.804264852786296 220 0.202706572987296 4 4 0 -7.30886640082969 LTS-013 chr17 45196191 45214473 18283 * CDC27 0.336 1 NA 0.806566328437965 67 0.168747191544045 3 3 0 -5.76905096689721 LTS-013 chr17 45214474 45221286 6813 * CDC27 0.30541906840201 13 0.117865307742485 0.720118582838381 39 0.246629952222623 1 1 0 -6.74292120641913 LTS-013 chr17 45221287 45221303 17 * CDC27 0.215 1 NA 0.553378407284685 3 0.193345114583569 1 1 0 -5.7644126865125 LTS-013 chr17 45221304 48154817 2933514 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-013 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.170481908020374 72 0.069110578820115 0.818626250796028 3983 0.337493175148023 3 3 0 -6.87033714083143 LTS-013 NA NA NA NA LTS-013 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.086 1 NA NA NA NA NA LTS-013 chr17 48155444 49375337 1219894 * c(TOB1, CHAD, WFIKKN2, COL1A1, EME1, TMEM92, SAMD14, CACNA1G-AS1, ITGA3, HILS1, TOB1-AS1, NME1, NME2, UTP18, MRPL27, PDK2, LUC7L3, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, NME1-NME2, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.171971513463522 48 0.0477200344132018 0.857570408337504 2975 0.189088317677582 3 3 0 -6.78597538160452 LTS-013 chr17 49375338 49567659 192322 * character(0) NA 0 NA 1.034 1 NA NA NA NA NA LTS-013 chr17 49567660 60705277 11137618 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, APPBP2, TLK2, CLTC, HSF5, OR4D2, MSI2, C17orf64, COX11, DYNLL2, EFCAB3, ANKFN1, PPM1E, MMD, MTVR2, STXBP4, OR4D1, C17orf47, GDPD1, HLF, METTL2A, C17orf67, NACA2, SKA2, RNF126P1, YPEL2, C17orf82, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TBC1D3P2, TRIM37, RNFT1, TUBD1, MRPS23, PTRH2, SEPT4, BCAS3, RNF43, MKS1, SMG8, TMEM100, MSX2P1, NA NA NA NA NA NA NA NA NA LTS-013 PRR11, TEX14, CA10, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, SUPT4H1, TBX2, CA4, MIR454, TRIM25, VEZF1, DHX40, COIL, AKAP1, VMP1, EPX, BRIP1, KIF2B, USP32, PPM1D, DGKE, MTMR4, NOG, TSPOAP1, TBX4, MRC2, MED13) 0.128640128561799 77 0.0539987911563132 1.07252128355608 5191 0.343785865230609 4 4 0 -6.78341391870807 LTS-013 NA NA NA NA LTS-013 chr17 60705278 70117827 9412550 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, MAP3K3, PLEKHM1P1, LOC440461, TACO1, AMZ2, PECAM1, NA NA NA NA NA NA NA NA NA LTS-013 FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, SCN4A, SMURF2, SMARCD2, SOX9, SNORA50C, SNORD104, MIR634, MIR635, LOC729683, CACNG1, LIMD2, KCNH6, AXIN2, RGS9, CEP95, SLC16A6, STRADA, PRR29, CD79B, MRC2, HELZ) 0.167636494626464 87 0.0607960578675297 0.843730408241931 5308 0.248073254810804 3 3 0 -7.09510109974549 LTS-013 NA NA NA NA LTS-013 chr17 70117828 70117918 91 * SOX9 NA 0 NA 1.19 1 NA NA NA NA NA LTS-013 chr17 70117919 70122503 4585 * SOX9 0.15998790628295 3 0.0247857485933617 1.19586722939057 67 0.428075014983576 16 14 2 -6.75616952406164 LTS-013 chr17 70122504 75085654 4963151 * c(SMIM6, CD300LD, LOC100287042, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, MIR4738, CDK3, ATP5H, ST6GALNAC2, CD300C, CD300A, CYGB, RNF157, METTL23, USH1G, CD300LB, KIF19, MGAT5B, CD300LF, C17orf77, AANAT, SLC39A11, TRIM65, UNC13D, EVPL, FDXR, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GALK1, NAT9, LINC00469, FADS6, HID1, TSEN54, UBALD2, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, NA NA NA NA NA NA NA NA NA LTS-013 MRPL58, CD300E, OTOP3, GPR142, ZACN, ITGB4, BTBD17, LLGL2, LINC00511, LOC400620, MXRA7, ACOX1, MRPS7, HN1, SDK2, TMEM104, C17orf80, ST6GALNAC1, GPRC5C, PRPSAP1, MIF4GD, CASKIN2, SLC25A19, RPL38, UBE2O, SEC14L1, SRSF2, CPSF4L, SMIM5, DNAI2, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, ARMC7, RHBDF2, NUP85, MYO15B, QRICH2, FAM104A, MGC16275, FBF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 UNK, GALR2, SPHK1, TRIM47, SLC16A5, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, TMEM94) 0.175623239098025 118 0.0660350501095201 0.870778715368264 6891 0.219401024951732 3 3 0 -6.80946734615801 LTS-013 NA NA NA NA LTS-013 chr17 75085655 75139605 53951 * c(SEC14L1, SNHG20) NA 0 NA 0.995 1 NA NA NA NA NA LTS-013 chr17 75139606 76433899 1294294 * c(TNRC6C-AS1, C17orf99, MIR4316, LOC100507351, LOC100996291, SEPT9, TMC6, AFMID, TMC8, TMEM235, BIRC5, FLJ45079, TNRC6C, SEC14L1, TK1, DNAH17, SOCS3, SYNGR2, PGS1) 0.152298718252945 32 0.0672589408254973 1.07084421345849 1131 0.238084433028402 4 4 0 -6.77306803475813 LTS-013 chr17 76433900 76468839 34940 * DNAH17 0.113 1 NA 1.08238304505673 114 0.206934431712321 4 4 0 -5.76453523460935 LTS-013 chr17 76468840 80363278 3894439 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, DNAH17-AS1, ALYREF, BAIAP2, C1QTNF1, PPP1R27, SLC38A10, CANT1, TBC1D16, CSNK1D, TEPSIN, RBFOX3, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, NA NA NA NA NA NA NA NA NA LTS-013 TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, SGSH, ENGASE, TIMP2, ACTG1, MIR657, ASPSCR1, CARD14, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SLC16A3, HGS, CD7, MAFG-AS1, CYTH1, AATK, EIF4A3) 0.133655452066614 201 0.0459843457031982 1.08467073949722 6056 0.317751039817471 4 4 0 -6.74094398863886 LTS-013 NA NA NA NA LTS-013 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 2.08969600977041 39 0.795705032864086 9 NA NA -5.76441048775592 LTS-013 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.019 1 NA NA NA NA NA LTS-013 chr17 80391535 81043175 651641 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.145817285317236 22 0.0298634699897189 1.0334921412978 874 0.26008757818767 4 4 0 -6.80543622344269 LTS-013 chr17 81043176 81083625 40450 * METRNL NA 0 NA 1.05714715973925 21 0.248014573304531 4 NA NA -5.76502807482936 LTS-013 chr18 116845 607035 490191 * c(CETN1, CLUL1, ROCK1P1, COLEC12, USP14, THOC1) 0 1 NA 1.3283564222833 299 0.302673467631952 5 5 0 -5.76596110617271 LTS-013 chr18 607036 2937929 2330894 * c(NDC80, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TYMS, YES1, EMILIN2, LPIN2) 0.364780163689249 27 0.0415868294952186 1.24457158156925 1026 0.367503819490859 6 4 2 -7.07244377123615 LTS-013 chr18 2937930 9887614 6949685 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, MYL12B, MYL12A, RALBP1, RAB31, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, TGIF1, LOC727896, ZBTB14, ARHGAP28, TXNDC2, MYOM1, L3MBTL4, DLGAP1, LPIN2, PPP4R1) 0.33912260175392 56 0.0963687924374076 1.37277505595626 2789 0.42884126047663 6 4 2 -6.94159292660911 LTS-013 chr18 9887615 9887704 90 * TXNDC2 NA 0 NA 1.137 1 NA NA NA NA NA LTS-013 chr18 9887705 14866503 4978799 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, APCDD1, ZNF519, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA) 0.416082854038348 57 0.0837169191764184 1.1549376348464 2481 1.54452361091561 4 2 2 -6.73691782396349 LTS-013 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.23059319590058 33 0.731917777196153 5 NA NA -5.76487418988786 LTS-013 chr18 18529727 19029515 499789 * c(ROCK1, GREB1L) 0.416 1 NA 1.05495944034429 247 0.193854173469156 4 4 0 -5.77821996530768 LTS-013 chr18 19029516 23772380 4742865 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.426440025450717 10 0.0423482913206398 1.15941338948161 2552 0.317555834834896 4 2 2 -6.82750404364329 LTS-013 chr18 23772381 28742778 4970398 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC1, DSC2, DSC3, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.33364266006656 20 0.156412376680835 1.30602047443207 822 0.651779586518903 5 4 1 -6.83206958364115 LTS-013 chr18 28742779 39535357 10792579 * c(ZSCAN30, MIR4318, MIR3975, DSG2-AS1, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, INO80C, SLC25A52, DSG4, DSC1, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, TPGS2, CCDC178, MIR187, MEP1B, WBP11P1, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, KC6, GAREM1, MIR924HG, TTR, ZNF24, FHOD3, ASXL3, C18orf21, ZNF397, NOL4, B4GALT6) 0.377789034885394 62 0.120620685684143 1.19153067627951 3618 0.42666676086472 5 3 2 -7.02034215262491 LTS-013 chr18 39535358 39537515 2158 * PIK3C3 NA 0 NA 1.936 1 NA NA NA NA NA LTS-013 chr18 39537516 40323677 786162 * c(LINC00907, PIK3C3, RIT2) 0.21160344024322 3 0.0580201114557128 1.52630931109032 248 0.464155795033813 7 6 1 -6.76285045845279 LTS-013 chr18 40323678 40500610 176933 * RIT2 NA 0 NA 2.05 1 NA NA NA NA NA LTS-013 chr18 40500611 40857645 357035 * c(RIT2, SYT4) 0.18 1 NA 2.22370810174729 116 0.446720918734933 10 10 0 -5.76556075587213 LTS-013 chr18 41559242 44089704 2530463 * c(MIR4319, HAUS1, LOXHD1, C18orf25, SETBP1, SIGLEC15, RNF165, ATP5A1, EPG5, SLC14A1, SLC14A2, PSTPIP2) 0.339846767311537 15 0.191151348661834 0.858854997868719 1225 0.320026628966975 3 2 1 -6.79489358236419 LTS-013 chr18 44089705 44135143 45439 * LOXHD1 0.444 1 NA 0.942972740425642 93 0.400764473717556 3 3 0 -5.76477631944688 LTS-013 chr18 44135144 55368611 11233468 * c(SNORD58C, LINC01630, MIR1539, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4529, MIR4743, MIR4744, LINC-ROR, ACAA2, POLI, LOXHD1, STARD6, C18orf54, TCEB3C, DCC, ZBTB7C, SKA1, CFAP53, FECH, WDR7, SNORD58B, SNORD58A, DYNAP, BOD1L2, ST8SIA5, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, NARS, C18orf32, ST8SIA3, IER3IP1, TCEB3B, MEX3C, ATP8B1, DYM, ELAC1, MAPK4, RAB27B, RPL17, SKOR2, NA NA NA NA NA NA NA NA NA LTS-013 SCARNA17, SNORA37, TCF4, CCDC68, KATNAL2, MRO, HDHD2, MBD2, PIAS2, TXNL1, LIPG, ONECUT2, CTIF) 0.40858163733609 107 0.095303051697446 0.866919963577445 4741 0.274299605304872 3 2 1 -6.9029872562134 LTS-013 NA NA NA NA LTS-013 chr18 55368612 55371720 3109 * c(LOC100505549, ATP8B1) NA 0 NA 1.208 1 NA NA NA NA NA LTS-013 chr18 55371721 56940465 1568745 * c(LOC100505549, MIR3591, MALT1, ALPK2, NEDD4L, GRP, RAX, OACYLP, MIR122, ATP8B1, ZNF532, SEC11C) 0.440811127068655 29 0.0656394465684531 0.944329072729332 817 0.293624051973487 4 2 2 -7.04019581898864 LTS-013 chr18 56940466 56940564 99 * RAX NA 0 NA 0.752 1 NA NA NA NA NA LTS-013 chr18 56940565 56964135 23571 * c(RAX, CPLX4) 0.283 1 NA 0.569088813334526 38 0.452708599545467 1 1 0 -5.76553481304695 LTS-013 chr18 56964136 56979895 15760 * CPLX4 NA 0 NA 0.931 1 NA NA NA NA NA LTS-013 chr18 56979896 65182392 8202497 * c(CDH7, MIR5011, LINC01544, CCBE1, RNF152, LINC00305, PHLPP1, PIGN, KDSR, CDH20, HMSD, LOC284294, CDH19, CPLX4, LMAN1, LINC01538, MC4R, SERPINB2, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, DSEL, VPS4B) 0.432259666360135 73 0.086520950120426 0.900504605368203 2832 0.400871824794138 3 2 1 -6.9274688303591 LTS-013 chr18 65182393 65945655 763263 * c(LOC643542, DSEL) NA 0 NA 0.881585804770565 10 0.0510042481890806 3 NA NA -5.84010073667711 LTS-013 chr18 65945656 66509351 563696 * c(TMX3, CCDC102B) 0 1 NA 0.746597448548332 100 0.239321288630826 2 2 0 -5.78827298507563 LTS-013 chr18 66509352 67864794 1355443 * c(CD226, DOK6, RTTN, CCDC102B) 0.260379776685829 10 0.206308183712296 0.693046843122919 441 0.227454675045744 2 2 0 -6.76347127572885 LTS-013 chr18 67864795 67992279 127485 * c(RTTN, SOCS6) 0.428 1 NA 0.707589324596646 33 0.169880277584307 2 2 0 -5.76467693459887 LTS-013 chr18 67992280 77926862 9934583 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.442744573308057 78 0.101342688403459 0.740851938424313 2739 0.202113821181356 2 1 1 -7.19038490271692 LTS-013 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.659766466760365 17 0.144751714406184 2 NA NA -5.7724766369882 LTS-013 chr19 107416 327182 219767 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.173 1 NA 0.837675475040312 83 0.213970895057774 3 3 0 -5.77928627226246 LTS-013 chr19 327183 4037525 3710343 * c(C19orf71, MED16, LOC100288123, MIR1909, MIR1227, MIR3187, MIR4321, MIR4745, FSTL3, APC2, ABCA7, HMG20B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, CFD, ARID3A, EEF2, EFNA2, ELANE, SBNO2, ZFR2, PIP5K1C, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, NA NA NA NA NA NA NA NA NA LTS-013 DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, ODF3L2, MKNK2, GPX4, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MATK, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, FZR1, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, BTBD2, RNF126, PRTN3, AZU1, NCLN, SPPL2B, PTBP1, WDR18, REXO1, ZNF77, CACTIN, CELF5, HCN2, RPS15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 SGTA, LINGO3, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, TLE6, PLPPR3, ZNF556, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, LMNB2, RAX2, MUM1, ATCAY, S1PR4, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, APBA3, CDC34) 0.178685610859358 196 0.0624913069831021 0.810999240249291 7250 0.20788862619861 3 3 0 -7.26605713817604 LTS-013 NA NA NA NA LTS-013 chr19 4037526 4095518 57993 * c(ZBTB7A, PIAS4, MAP2K2) NA 0 NA 0.777904215052099 79 0.120292337031866 2 NA NA -5.79069082238565 LTS-013 chr19 4095519 4097222 1704 * MAP2K2 NA 0 NA 0.972 1 NA NA NA NA NA LTS-013 chr19 4097223 4102449 5227 * MAP2K2 0.377 1 NA 1.21582757167299 19 0.715735057486092 5 5 0 -5.76443723127737 LTS-013 chr19 4102450 8167722 4065273 * c(LOC100128568, LOC100128573, DPP9-AS1, PET100, CHAF1A, SH2D3A, MIR3940, TGFBR3L, MIR4747, MIR4746, EBI3, PLIN3, CLEC4M, TUBB4A, TIMM44, SEMA6B, PNPLA6, EVI5L, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NDUFA11, ZNF358, TICAM1, ZNRF4, PRR22, ANKRD24, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ARHGEF18, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, MIR7-3HG, SLC25A41, MBD3L5, UHRF1, GTF2F1, NA NA NA NA NA NA NA NA NA LTS-013 CD209, ADGRE4P, CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, VMAC, CTXN1, MIR7-3, MLLT1, PLIN5, CLEC4GP1, NRTN, FLJ25758, SIRT6, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, RETN, GPR108, DUS3L, XAB2, SHD, MCOLN1, CAMSAP3, PTPRS, RFX2, SAFB, CCL25, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, DENND1C, LRRC8E, PRR36, UBXN6, ACSBG2, CLPP, CAPS, ALKBH7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 FBN3, CREB3L3, HDGFRP2, MPND, RANBP3, KHSRP, TNFSF14, TNFSF9, DPP9, CRB3, PEX11G, TRIP10, LONP1, SAFB2, CD70) 0.329276661154827 205 0.101421879103947 1.01717989035524 6397 0.341388680351445 4 3 1 -6.8656252352118 LTS-013 NA NA NA NA LTS-013 chr19 8167723 8174511 6789 * FBN3 0.334 1 NA 1.08021093653387 27 0.706917543356658 4 4 0 -5.76441277366055 LTS-013 chr19 8174512 8198059 23548 * FBN3 0.360910805617489 3 0.039230090491866 1.05353997791411 110 0.320244420311451 6 4 2 -6.75247784398423 LTS-013 chr19 8198060 8200852 2793 * FBN3 NA 0 NA 1.379 1 NA NA NA NA NA LTS-013 chr19 8200853 8665975 465123 * c(RAB11B-AS1, MIR4999, KANK3, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, RPS28, CERS4, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B) 0.424922025065333 25 0.0479091849231439 1.24686899600627 790 0.287661557978333 4 2 2 -6.79386886368773 LTS-013 chr19 8665976 8668643 2668 * ADAMTS10 NA 0 NA 0.931 1 NA NA NA NA NA LTS-013 chr19 8668644 9524185 855542 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF558, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF699, OR7G2, OR7G3, ZNF317, ZNF177, ADAMTS10, ZNF559, MBD3L1, MUC16) 0.391533257547401 78 0.113863148194736 1.18242692923085 1685 0.836531592467825 5 3 2 -6.74832113921203 LTS-013 chr19 9524186 9578417 54232 * c(ZNF266, ZNF560) 0 1 NA 1.07773303049133 61 0.571805224967861 4 4 0 -5.76445110915824 LTS-013 chr19 9578418 9958878 380461 * c(ZNF560, ZNF846, ZNF561-AS1, PIN1, ZNF562, FBXL12, UBL5, ZNF812P, ZNF121, ZNF426, ZNF561) 0.371278692209492 3 0.0241315837303177 1.10375669759156 421 0.267792099472255 3 2 1 -6.98291193290784 LTS-013 chr19 9958879 9958890 12 * PIN1 NA 0 NA 0.922 1 NA NA NA NA NA LTS-013 chr19 9958891 10400818 441928 * c(SNORD105B, MIR4322, DNMT1, ICAM1, ICAM4, C3P1, P2RY11, COL5A3, RDH8, MRPL4, PIN1, C19orf66, PPAN, SNORD105, PPAN-P2RY11, ICAM5, ANGPTL6, EIF3G, S1PR2, OLFM2) 0.347141659816428 36 0.07362290771005 1.00665354738165 1065 0.587270168118405 4 3 1 -6.83217403395985 LTS-013 chr19 10400819 17314057 6913239 * c(ZGLP1, MIR1470, MIR1181, MIR1238, LOC100507373, ZNF625-ZNF20, AP1M2, MIR4748, DDX39A, ZNF443, AKAP8, CDKN2D, KLF2, CARM1, CHERP, RNASEH2A, KLF1, GIPC1, ILVBL, TMED1, CDC37, FDX1L, CYP4F8, NACC1, MISP3, PGLYRP2, CCDC151, ZNF653, CIB3, RLN3, RAVER1, CALR3, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, OR1I1, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ILF3-AS1, ZNF563, SPC24, LINC00905, ZNF791, ZNF564, ZNF709, NA NA NA NA NA NA NA NA NA LTS-013 ZNF433, DHPS, DNASE2, DNM2, ELAVL3, ZNF627, DAND5, EPOR, FARSA, ADGRL1, MAST1, SIN3B, BRD4, CASP14, C19orf38, SYCE2, KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, SNORD41, AKAP8L, CPAMD8, ZNF763, ZNF844, OR10H5, NWD1, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, ICAM3, NANOS3, PALM3, ILF3, JUNB, TMEM205, ZNF788, CLEC17A, CYP4F24P, OR7A10, LDLR, ZNF833P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CYP4F3, LYL1, MIR181C, MIR199A1, MAN2B1, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, ECSIT, WDR83OS, PDE4A, ZNF44, S1PR5, ACP5, BEST2, CC2D1A, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, PRKCSH, ANGPTL8, RGL3, SLC44A2, PTGER1, MIR181D, ZNF490, DOCK6, CYP4F11, EPS15L1, WIZ, RAD23A, RFX1, C19orf67, PLPPR2, RASAL3, KRI1, SLC1A6, ZSWIM4, UCA1, SMARCA4, CYP4F12, MIR638, MIR639, PRDX2, ICAM5, TPM4, TYK2, ZNF878, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 ZNF20, ZNF69, ZNF136, CACNA1A, YIPF2, C19orf43, TMEM38A, SMIM7, C19orf57, EPHX3, PODNL1, SLC35E1, ZNF442, CALR, CCDC130, QTRT1, RTBDN, C19orf44, MRI1, FBXW9, WDR83, ELOF1, ZNF333, ADGRE3, HSH2D, ATG4D, CYP4F2, SYDE1, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, HAUS8, MED26, IL27RA, TECR, RAB3D, IER2, ADGRE5, KEAP1) 0.289223353729289 216 0.0779816448234534 1.17298527191653 11730 0.346344746430542 4 3 1 -6.9532399926322 LTS-013 NA NA NA NA LTS-013 chr19 17314058 17316065 2008 * MYO9B NA 0 NA 1.317 1 NA NA NA NA NA LTS-013 chr19 17316066 19770774 2454709 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, CCDC124, NXNL1, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, CILP2, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, HAPLN4, BORCS8-MEF2B, MYO9B, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, NA NA NA NA NA NA NA NA NA LTS-013 PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ATP13A1, ANO8, SUGP1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, LOC729966, BORCS8, UBA52, DDA1, KXD1, ABHD8, OCEL1, COLGALT1, PBX4, KIAA1683, ELL, PLVAP, USHBP1, TSSK6, GTPBP3, MPV17L2, RFXANK, LPAR2, CRLF1, MVB12A, ARMC6, HOMER3, GDF15) 0.286525511685728 95 0.0494390753600066 1.21628201077324 5282 0.347902758582089 5 4 1 -6.8551352137096 LTS-013 NA NA NA NA LTS-013 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.712 1 NA NA NA NA NA LTS-013 chr19 19772755 24309080 4536326 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101, ZNF254) 0.273912231954378 35 0.0886430667187847 1.11462533090902 1541 0.319362386301098 4 3 1 -6.88208527842897 LTS-013 chr19 24309081 24345121 36041 * c(HAVCR1P1, ZNF254) NA 0 NA 1.06459279457682 23 0.222450189832514 4 NA NA -5.76487333400187 LTS-013 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.251 1 NA 1.02571455566118 55 0.196211488318468 4 4 0 -5.90151709071808 LTS-013 chr19 30097269 35851337 5754069 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, NA NA NA NA NA NA NA NA NA LTS-013 PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.295416116244057 93 0.0667968195389141 1.03049540505636 3460 0.30240581384364 4 3 1 -6.95623853743502 LTS-013 NA NA NA NA LTS-013 chr19 35851338 35851352 15 * FFAR3 NA 0 NA 0.717 1 NA NA NA NA NA LTS-013 chr19 35851353 35863609 12257 * FFAR3 0.327 1 NA 0.278393285242631 39 0.474372337631371 0 0 0 -5.76461317515189 LTS-013 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.852 1 NA NA NA NA NA LTS-013 chr19 35863628 38229523 2365896 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, ZNF573, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NA NA NA NA NA NA NA NA NA LTS-013 ZNF793, NPHS1, ATP4A, ZNF571, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.278027458127637 61 0.0697117445083995 1.03628226965515 4214 0.230837064236031 4 3 1 -7.01614921264733 LTS-013 NA NA NA NA LTS-013 chr19 38229524 38229727 204 * ZNF573 NA 0 NA 0.824 1 NA NA NA NA NA LTS-013 chr19 38229728 38388988 159261 * c(LOC100631378, ZNF573, LOC644554, WDR87) 0.431117343187956 8 0.032396814217274 0.767261844898815 265 0.183031788473387 2 1 1 -6.83511150049554 LTS-013 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 1.022 1 NA NA NA NA NA LTS-013 chr19 38571875 39138503 566629 * c(SPINT2, MAP4K1, RASGRP4, FAM98C, GGN, SIPA1L3, EIF3K, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A) 0.14239608236685 2 0.190918830920368 1.01620559334874 1509 0.561097001112178 4 4 0 -6.74022752772002 LTS-013 chr19 39138504 39138509 6 * ACTN4 NA 0 NA 0.853 1 NA NA NA NA NA LTS-013 chr19 39138510 40368559 1230050 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, RINL, FBXO27, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, FCGBP, DYRK1B, TIMM50, GMFG) 0.322212467115971 31 0.105730424101321 0.876706134084987 2103 0.209981113410348 3 2 1 -6.93185253874206 LTS-013 chr19 40368560 40373942 5383 * FCGBP NA 0 NA 0.172 1 NA NA NA NA NA LTS-013 chr19 40373943 40398537 24595 * FCGBP 0.072 1 NA 0.512208820018729 51 0.327550527759145 1 1 0 -5.7644789881519 LTS-013 chr19 40398538 40399783 1246 * FCGBP NA 0 NA 0.73 1 NA NA NA NA NA LTS-013 chr19 40399784 46815954 6416171 * c(SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR4323, MIR642B, PCAT19, LOC100505622, LOC100505715, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, MIR4531, RNU6-66P, LIPE-AS1, TOMM40, CEACAM5, RABAC1, ZNF234, CEACAM3, PPP1R13L, CD3EAP, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, CLASRP, EGLN2, CKM, ZNF526, CLPTM1, CEACAM20, IRGQ, ZNF428, C19orf47, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, NA NA NA NA NA NA NA NA NA LTS-013 CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF296, DEDD2, ZNF780B, DMPK, DMWD, MEGF8, CADM4, ERCC1, ERCC2, ERF, AKT2, CYP2G1P, CIC, FBXO46, ETHE1, FOSB, PRG1, CBLC, PLD3, EML2, IRF2BP1, GIPR, ZNF285, LYPD3, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, FOXA3, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 APOC2, APOE, ZNF233, B3GNT8, IGFL1, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LIPE, BCAM, MAP3K10, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, PAFAH1B3, PLAUR, RAB4B, POU2F2, QPCTL, ATP5SL, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CEACAM19, PSMC4, CD177, PRX, SPTBN4, MARK4, PVR, NECTIN2, BCKDHA, RELB, BCL3, RPS19, RTN2, CEACAM1, DMRTC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 TMEM91, HIF3A, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, SNRPD2, MIR641, MIR642A, TGFB1, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, COQ8B, CNTD2, OPA3, ITPKC, B9D2, RSPH6A, SYMPK, MIA, TEX101, LTBP4, CNFN, FCGBP, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, SHKBP1, ZNF235, LOC93429, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CD79A) 0.33366730599964 180 0.104020609110894 0.867383144994087 10311 0.244589794564059 3 2 1 -6.9481957435049 LTS-013 NA NA NA NA LTS-013 chr19 46815955 46823602 7648 * HIF3A NA 0 NA 0.973 1 NA NA NA NA NA LTS-013 chr19 46823603 46998717 175115 * c(PPP5D1, PNMAL1, PPP5C, PNMAL2, HIF3A, CCDC8) NA 0 NA 1.09618452026331 323 0.228535508458167 4 NA NA -5.76443224733454 LTS-013 chr19 46998718 47023033 24316 * c(PPP5D1, PNMAL2) NA 0 NA 0.584 1 NA NA NA NA NA LTS-013 chr19 47023034 54974227 7951194 * c(SIGLEC14, MIR935, SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, MIR3191, MIR3190, MIR320E, MIR4324, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, ZNF816-ZNF321P, SAE1, MIR4752, MIR371B, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, LILRB2, CGB3, RUVBL2, KDELR1, LILRB5, KLK11, LILRB3, NA NA NA NA NA NA NA NA NA LTS-013 LILRA3, KPTN, KLK8, BIRC8, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, LENG8, AP2S1, CLDND2, ZNF816, OSCAR, ZNF813, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, CRX, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, CCDC155, DACT3, AP2A1, DBP, ZNF836, ZNF610, ZNF600, ZNF320, ZNF114, ZNF525, SPACA4, ADM5, EMP3, ETFB, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, RPL13A, SYNGR4, LILRA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 FPR1, FPR2, FPR3, NUP62, PPP1R15A, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, PRPF31, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, SIGLEC7, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, LOC284379, VSTM1, GPR32, SLC6A16, GRIN2D, ARHGAP35, TFPT, STRN4, GYS1, GLTSCR2, GLTSCR1, HAS1, EHD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 VN1R2, VN1R4, HRC, PRMT1, C19orf81, ZNF677, LILRA5, KLK3, IRF3, KCNA7, KCNC3, KCNJ14, KLK1, KLK2, ZNF808, ZNF761, LAIR1, ZNF818P, LHB, LIG1, LIM2, ZNF321P, SIGLEC16, LOC400710, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR150, MIR99B, KLK14, KLK12, TARM1, MIR372, MIR373, MYBPC2, NDUFA3, NKG7, CNOT3, NPAS1, NTF4, NUCB1, DPRX, SHANK1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, FAM83E, RASIP1, TMEM160, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 PIH1D1, C19orf73, PPP2R1A, TMEM143, ZNF331, ASPDH, KLK15, ZNF701, ZNF83, ZNF415, PRKCG, CABP5, PRRG2, KLK7, KLK6, KLK10, SPHK2, MEIS3, SLC17A7, RCN3, TTYH1, PTGIR, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, CACNG8, CACNG7, CACNG6, ZNF350, TSKS, KLKP1, RPL18, RPS9, RPS11, RRAS, CLEC11A, ELSPBP1, LIN7B, SELENOW, FAM90A27P, SLC1A5, ZNF649, SEC1P, SLC8A2, SNRNP70, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR643, C5AR1, TULP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CEACAM18, LINC01530, NR1H2, ZNF28, ZNF137P, CA11, ZNF175, TSEN34, MBOAT7, FKRP, LENG1, LILRA6, TBC1D17, MYH14, ZNF665, ZNF613, ZNF702P, ZNF614, FUZ, CALM3, ZNF611, MED25, BCL2L12, GRWD1, ZNF541, SYT3, AKT1S1, ZNF528, SNORD35B, TEAD2, ZNF347, ZNF577, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ZNF765, NLRP12, MYADM, ZNF845, CYTH2, CCDC114, ACPT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 CGB5, CGB7, LRRC4B, LENG9, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, ZNF432, DHX34) 0.326218045492802 425 0.0935857093495081 0.864882450652216 15020 0.349749520978659 3 2 1 -7.00212444952197 LTS-013 NA NA NA NA LTS-013 chr19 54974228 54974318 91 * LENG9 0.319 1 NA 0.316 1 NA NA NA NA NA LTS-013 chr19 54974319 55333223 358905 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, CDC42EP5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR2, LILRP2, KIR3DX1, LENG9) 0.330966648557918 27 0.111681667572592 0.808755872463523 584 0.456563280792547 4 3 1 -6.83728933337169 LTS-013 chr19 55333224 55333239 16 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.778 1 NA NA NA NA NA LTS-013 chr19 55333240 55351171 17932 * c(KIR2DS4, KIR3DL1) 0.299907253547167 6 0.0218967273049346 1.54516865245297 39 0.737548623251321 11 8 3 -6.73758664423792 LTS-013 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.277 1 NA NA NA NA NA LTS-013 chr19 55358616 56549532 1190917 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, NLRP13, NLRP8, NLRP5, TMEM190, ZNF524, ZNF784, NLRP4, ZNF579, NLRP7, NLRP11, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ISOC2, BRSK1, KMT5C, NA NA NA NA NA NA NA NA NA LTS-013 FIZ1, ZNF628, NCR1) 0.346423442642523 102 0.102326959020675 0.875908064306671 3019 0.380126377730016 3 2 1 -6.8091738814935 LTS-013 NA NA NA NA LTS-013 chr19 56549533 56565094 15562 * NLRP5 0 1 NA 0.905844893362589 17 1.02597176675407 3 3 0 -5.76441048432703 LTS-013 chr19 56565095 56614634 49540 * c(NLRP5, ZNF787) 0.213630549144177 3 0.250570016828298 0.900315253222004 48 0.326650633743182 2 2 0 -6.75054044150937 LTS-013 chr19 56614635 56658263 43629 * c(ZNF787, ZNF444) NA 0 NA 1.136 1 NA NA NA NA NA LTS-013 chr19 56658264 56758753 100490 * c(ZSCAN5B, ZNF444, ZSCAN5A, GALP) 0.184057572982066 9 0.121923245436536 1.24194849537537 163 0.623607311107731 3 3 0 -6.76005713383577 LTS-013 chr19 56758754 56981382 222629 * c(ZNF542P, ZNF582, ZNF583, ZNF582-AS1, ZNF667, ZSCAN5A) 0.247 1 NA 1.1491909852748 235 0.247246444373461 4 4 0 -5.76861971307068 LTS-013 chr19 56981383 58723757 1742375 * c(MIMT1, ZNF667-AS1, LOC100128398, PEG3-AS1, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, ZIM3, ZNF543, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, ZSCAN1, ZNF530, ZNF773, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF416, VN1R1, ZNF304, ZNF471, USP29, ZNF71, ZNF667, ZSCAN18, AURKC, ZNF814, ZNF17, ZNF134, ZNF135, ZNF154, NA NA NA NA NA NA NA NA NA LTS-013 ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551, ZNF835, ZNF264) 0.253170655077641 97 0.0552400688466766 1.16570702104171 3060 0.552159970684385 5 4 1 -6.82599374272839 LTS-013 NA NA NA NA LTS-013 chr19 58723758 58723763 6 * ZNF274 NA 0 NA 0.981 1 NA NA NA NA NA LTS-013 chr19 58723764 59074653 350890 * c(A1BG, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZNF8, MZF1, ZNF132, ZBTB45, UBE2M) 0.282414489521317 15 0.0402549020972247 1.04520197846163 829 0.187095808423324 5 4 1 -7.06541193319851 LTS-013 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 1.13710921658747 35 0.146677786693295 4 NA NA -5.76469984298779 LTS-013 chr20 68260 76962 8703 * DEFB125 0.275 1 NA 1.4531964684506 11 1.19865433640471 6 6 0 -5.76441365299161 LTS-013 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.281818446709076 70 0.0761618414099641 1.11781367756792 1957 0.446222646756801 5 4 1 -6.84798563278493 LTS-013 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.745 1 NA NA NA NA NA LTS-013 chr20 1569093 1592329 23237 * SIRPB1 0.345 1 NA 0.738621309545815 39 0.201524172006323 2 2 0 -5.7653726292167 LTS-013 chr20 1592330 1592343 14 * SIRPB1 0.432 1 NA 1.811 1 NA NA NA NA NA LTS-013 chr20 1592344 3736206 2143863 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, HSPA12B, TMC2, C20orf141, SIRPA, STK35, UBOX5, C20orf194, GNRH2, IDH3B, TGM6, ITPA, OXT, PDYN, C20orf27, AVP, SIRPG, CPXM1, EBF4, PTPRA, FASTKD5, GFRA4, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, ADAM33, SLC4A11, ATRN, LZTS3) 0.2888108252279 49 0.0839998532149673 1.15125408571154 2851 0.308856709964983 4 3 1 -6.83221540532583 LTS-013 chr20 3736207 3739196 2990 * C20orf27 NA 0 NA 1.36 1 NA NA NA NA NA LTS-013 chr20 3739197 3835414 96218 * c(CENPB, SPEF1, C20orf27, AP5S1, MAVS, CDC25B) 0.257719733160343 2 0.0403050865276332 1.36268306536039 259 0.276140906450851 5 4 1 -6.78663532741691 LTS-013 chr20 3835415 3838333 2919 * MAVS NA 0 NA 0.976 1 NA NA NA NA NA LTS-013 chr20 3838334 6096673 2258340 * c(MIR103B2, PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PRND, TMEM230, MIR103A2, PCNA, TRMT6, SMOX, CRLS1, FERMT1, PRNP, GPCPD1, MAVS, LOC643406, LINC01433, PANK2, MCM8, CDS2, RASSF2, SLC23A2) 0.27006012987793 62 0.085737914322697 1.14863640551219 2080 0.498990120851546 5 4 1 -6.81476907677309 LTS-013 chr20 6096674 6096695 22 * FERMT1 0.212 1 NA 2.001 1 NA NA NA NA NA LTS-013 chr20 6096696 26061861 19965166 * c(C20orf78, LOC100130264, SNAP25-AS1, LOC100134868, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, FAM182A, LINC00652, NA NA NA NA NA NA NA NA NA LTS-013 NXT1, VSX1, FOXA2, LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, MGME1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 DTD1, ENTPD6, GINS1) 0.276197853600696 177 0.0803831748704907 1.21267415810005 7363 0.35999934480173 5 4 1 -7.14914485138558 LTS-013 NA NA NA NA LTS-013 chr20 26061862 26061864 3 * FAM182A NA 0 NA 0.212 1 NA NA NA NA NA LTS-013 chr20 26061865 26188981 127117 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.317597631632358 12 0.157045737402719 0.626075511813559 44 0.655732769188591 1 1 0 -6.74895491370701 LTS-013 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.866450263375335 3 0.0161658075373095 3 NA NA -5.76453734074932 LTS-013 chr20 29625845 29625852 8 * FRG1BP 0.171 1 NA 2.103 1 NA NA NA NA NA LTS-013 chr20 29625853 32699896 3074044 * c(MCTS2P, MIR3193, MIR4755, HM13-AS1, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, MLLT10P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, RALY, MAPRE1, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, BCL2L1, NA NA NA NA NA NA NA NA NA LTS-013 NECAB3, SNTA1, BPIFB2, HM13, PDRG1, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.289632303318928 87 0.0730223296362229 1.19486057038921 3906 0.331653449971762 5 4 1 -6.8935927486027 LTS-013 NA NA NA NA LTS-013 chr20 32699897 32700036 140 * EIF2S2 NA 0 NA 1.388 1 NA NA NA NA NA LTS-013 chr20 32700037 39609426 6909390 * c(LOC100287792, TGIF2-C20orf24, MIR499B, LINC00489, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, CEP250, VSTM2L, SNHG11, PIGU, HMGB3P1, FAM83C, SLC32A1, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, ADIG, AHCY, EPB41L1, DLGAP4, NCOA6, SAMHD1, AAR2, PPP1R16B, TRPC4AP, SNORA71B, SNORA71A, GGT7, GHRH, GSS, LOC339568, ARHGAP40, EIF6, SNHG17, LBP, ASIP, NNAT, PHF20, SCAND1, ERGIC3, UQCC1, EDEM2, ACSS2, NA NA NA NA NA NA NA NA NA LTS-013 C20orf24, CTNNBL1, RALGAPB, NDRG3, MIR499A, MYH7B, TP53INP2, RPRD1B, RBL1, TGIF2, DHX35, RPN2, MANBAL, NORAD, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, MIR644A, TGM2, ACTR5, DSN1, FAM83D, GDF5, DYNLRB1, ITCH, SLA2, MAP1LC3A, KIAA1755, EIF2S2, CPNE1, NFS1, RBM39, TTI1, MAFB) 0.246474529833591 53 0.0695226466950397 1.31431222010027 6879 0.301070693390587 5 4 1 -6.80472281677866 LTS-013 NA NA NA NA LTS-013 chr20 39609427 39658318 48892 * TOP1 NA 0 NA 1.62146769083841 29 0.350306030880052 7 NA NA -5.76492864301131 LTS-013 chr20 39658319 39658323 5 * TOP1 NA 0 NA 1.156 1 NA NA NA NA NA LTS-013 chr20 39658324 39977543 319220 * c(ZHX3, PLCG1, LPIN3, TOP1) NA 0 NA 1.09800673886408 543 0.242857136987188 4 NA NA -5.76441902377051 LTS-013 chr20 39977544 39977698 155 * LPIN3 NA 0 NA 1.495 1 NA NA NA NA NA LTS-013 chr20 39977699 39988128 10430 * LPIN3 0 1 NA 1.38590961902859 77 0.467323041027644 5 5 0 -5.76452895136896 LTS-013 chr20 39988129 54979171 14991043 * c(ADA, ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3194, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, MIR4756, ATP9A, TRERNA1, SGK2, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, WFDC3, CBLN4, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, R3HDML, CSE1L, CSTF1, GTSF1L, WFDC5, CYP24A1, WFDC13, EYA2, SLC9A8, NA NA NA NA NA NA NA NA NA LTS-013 ADNP, ZMYND8, WFDC11, WFDC9, L3MBTL1, SNORD12C, TP53TG5, MOCS3, WFDC10B, LINC00494, LINC01270, HNF4A, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, SPINT4, SUMO1P1, MC3R, MMP9, ZFAS1, MYBL2, NFATC2, SLC35C2, IFT52, OSER1, PIGT, PFDN4, PI3, PLTP, CTSA, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, EPPIN, JPH2, SALL4, ZNFX1, PTGIS, SLC12A5, PREX1, PTPN1, NCOA5, KCNK15, SDC4, ELMO2, ZNF335, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, SLPI, SNAI1, STAU1, STK4, AURKA, SNORD12, MIR645, TNNC2, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, ZNF217, GDAP1L1, LINC01260, TTPAL, PABPC1L, SLC2A10, NCOA3, CHD6, PARD6B, TOX2, BCAS1, MATN4, DPM1, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.133136877711714 193 0.0469757394759162 1.2562845505897 10666 0.354312091724267 5 5 0 -6.8916331328182 LTS-013 NA NA NA NA LTS-013 chr20 54979172 55070268 91097 * c(GCNT7, CSTF1, RTFDC1, CASS4) 0.103 1 NA 1.28948334610076 139 0.252580083894408 5 5 0 -5.76446117380643 LTS-013 chr20 55070269 55205581 135313 * c(GCNT7, FAM209A, FAM209B, RTFDC1, TFAP2C) 0.093618034290778 3 0.0190787840283389 1.28275740650675 116 0.445445927793381 7 7 0 -6.8022375301433 LTS-013 chr20 55205582 55206274 693 * TFAP2C NA 0 NA 1.546 1 NA NA NA NA NA LTS-013 chr20 55206275 56470597 1264323 * c(MIR4325, MTRNR2L3, MIR4532, MIR5095, CTCFL, SPO11, PCK1, RBM38, PMEPA1, BMP7, TFAP2C, ZBP1, RAE1) 0.0959169549388207 14 0.0308549424327363 1.47637339932734 787 0.48249600743663 6 6 0 -6.74798799029496 LTS-013 chr20 56470598 56725905 255308 * character(0) NA 0 NA 1.267 1 NA NA NA NA NA LTS-013 chr20 56725906 59225064 2499159 * c(MIR298, LOC100506384, SLMO2-ATP5E, MIR4533, SYCP2, PHACTR3, C20orf85, ZNF831, APCDD1L-AS1, GNAS-AS1, CTSZ, APCDD1L, EDN3, GNAS, C20orf197, MIR646HG, MIR296, PRELID3B, ATP5E, NELFCD, PPP1R3D, PPP4R1L, RAB22A, CDH26, FAM217B, NPEPL1, TUBB1, STX16, VAPB) 0.108029625551625 23 0.0194418154945293 1.23609139955531 2357 0.303878098446015 5 5 0 -6.87517478114153 LTS-013 chr20 59225065 62872290 3647226 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, MIR646HG, NA NA NA NA NA NA NA NA NA LTS-013 KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.106601692694281 131 0.0362907276219828 1.40677442509898 5518 0.463567002134414 6 6 0 -6.78991105532399 LTS-013 NA NA NA NA LTS-013 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.44502187186701 119 0.471494607534137 6 NA NA -5.76472743979951 LTS-013 chr21 9825764 9825966 203 * MIR3648-1 0.133 1 NA 0.663888619493773 5 0.529135615886892 2 2 0 -5.76441138370045 LTS-013 chr21 9825967 10944816 1118850 * c(TEKT4P2, MIR3687-1, MIR3648-1, TPTE) 0.282863029513517 23 0.12315214408562 0.615396148060758 120 0.930265804572469 1 1 0 -6.77801229603859 LTS-013 chr21 10944817 10959723 14907 * TPTE NA 0 NA 0.947 1 NA NA NA NA NA LTS-013 chr21 10959724 11059877 100154 * c(BAGE, TPTE, BAGE3) 0.350879878820569 10 0.0621683199065247 0.984775453013232 53 1.13769458087898 9 6 3 -6.76179372019319 LTS-013 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.08267879919681 5 0.127445282376399 4 NA NA -5.76476479533632 LTS-013 chr21 14745307 15374268 628962 * c(MIR3156-3, POTED, ANKRD20A11P, NA) 0.31 1 NA 0.824632306011211 71 0.302139639522231 3 3 0 -5.79600320416781 LTS-013 chr21 15374269 15966430 592162 * c(SAMSN1-AS1, LIPI, ABCC13, LOC388813, RBM11, SAMSN1, HSPA13) 0.217074138302407 12 0.119407216420673 0.887967306979914 329 0.369007088941098 3 3 0 -6.83508653309216 LTS-013 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 1.318 1 NA NA NA NA NA LTS-013 chr21 15974248 31709649 15735402 * c(KRTAP25-1, GRIK1-AS2, LINC01549, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, GRIK1, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, NA NA NA NA NA NA NA NA NA LTS-013 C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, KRTAP24-1, KRTAP27-1, NRIP1, CLDN8, ADAMTS1) 0.248770417088271 66 0.0690961830891006 1.03048431034863 3128 0.36131319866081 4 3 1 -7.57264174669879 LTS-013 NA NA NA NA LTS-013 chr21 31709650 31803159 93510 * c(MIR4327, KRTAP13-1, KRTAP13-4, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP27-1) 0.48 1 NA 1.1426646603291 101 0.255035785879566 4 4 0 -5.76566938126057 LTS-013 chr21 31803160 32015170 212011 * c(KRTAP20-4, KRTAP22-2, KRTAP15-1, KRTAP19-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP22-1) 0.360116259769259 11 0.0267449230526264 1.14480196579755 186 0.391959538772656 6 4 2 -6.80150654309528 LTS-013 chr21 32015171 32253039 237869 * c(KRTAP21-3, KRTAP8-1, KRTAP11-1, KRTAP21-1, KRTAP21-2, KRTAP20-3) 0 1 NA 1.2297546202441 53 1.0676982384091 5 5 0 -5.76479083294199 LTS-013 chr21 32253040 33974547 1721508 * c(LINC00159, TCP10L, HUNK, KRTAP11-1, MIS18A, MRAP, C21orf59, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, KRTAP19-8, URB1-AS1, URB1) 0.205454919868108 38 0.0377782799406932 0.998464966561634 1098 0.365374982586591 3 3 0 -7.36594002136356 LTS-013 chr21 33974548 43321786 9347239 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, LINC00310, B3GALT5-AS1, OLIG1, LCA5L, IGSF5, LINC00479, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, NA NA NA NA NA NA NA NA NA LTS-013 MX1, MX2, PCP4, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, C21orf59, PRDM15, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SON, TMPRSS2, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.203219973853308 160 0.0593398268874408 0.93989482082991 7369 0.776511623289495 3 3 0 -6.95991643907091 LTS-013 NA NA NA NA LTS-013 chr21 43321787 43327856 6070 * C2CD2 0.176 1 NA 1.10627561182329 15 0.169166725310804 4 4 0 -5.76441448645799 LTS-013 chr21 43327857 43410072 82216 * c(C2CD2, ZBTB21) 0.44 1 NA 1.11011884999223 109 0.264937438361074 4 4 0 -5.76447112790926 LTS-013 chr21 43410073 44483276 1073204 * c(WDR4, UMODL1-AS1, NDUFV3, ZBTB21, PDE9A, PKNOX1, UBASH3A, SLC37A1, TMPRSS3, TFF1, TFF2, TFF3, CBS, RSPH1, UMODL1, ABCG1) 0.324859083206878 64 0.0668777295096438 1.0523028989505 1356 0.443386477299518 4 3 1 -6.74588411967865 LTS-013 chr21 44483277 44839326 356050 * c(CRYAA, SIK1, U2AF1, CBS) NA 0 NA 1.04956913248842 228 0.18520431606535 4 NA NA -5.77800365791236 LTS-013 chr21 44839327 44841036 1710 * SIK1 0.18 1 NA 0.898183035834093 13 0.229640075123146 3 3 0 -5.76441023009054 LTS-013 chr21 44841037 47737993 2896957 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, COL18A1-AS2, ADARB1, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CSTB, SIK1, RRP1B, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PFKL, PCBP3, NA NA NA NA NA NA NA NA NA LTS-013 C21orf58, YBEY, TSPEAR, AGPAT3, PWP2, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, MCM3AP) 0.230192202221147 122 0.0802661070903068 0.916439252697376 4558 0.295795809750933 3 3 0 -7.08448229498198 LTS-013 NA NA NA NA LTS-013 chr21 47737994 48084893 346900 * c(DIP2A-IT1, DIP2A, PRMT2, PCNT, C21orf58, S100B) 0.264609051323795 14 0.0999621906544648 1.02501859563614 702 0.279553439875614 5 4 1 -6.88082614130809 LTS-013 chr21 48084894 48084993 100 * PRMT2 NA 0 NA 1.14907253526441 3 0.0964174949546675 4 NA NA -5.76442239505497 LTS-013 chr22 16157787 16157883 97 * character(0) 0.333 1 NA 2.038 1 NA NA NA NA NA LTS-013 chr22 16157884 19136203 2978320 * c(CECR7, CECR5-AS1, FLJ41941, MIR3198-1, USP18, GAB4, CCT8L2, XKR3, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, TUBA8, CECR1, ATP6V1E1, PEX26, PRODH, MICAL3, BID, MIR648, OR11H1, DGCR6, DGCR14, SLC25A18, DGCR2) 0.407066185433496 69 0.109856189415714 0.897927575050515 2287 0.331891007069113 3 2 1 -6.76372143207215 LTS-013 chr22 19136204 19343288 207085 * c(GSC2, SLC25A1, HIRA, CLTCL1) 0 1 NA 0.868017710665198 279 0.293156837782509 3 3 0 -5.76632270853155 LTS-013 chr22 19343289 20052782 709494 * c(SEPT5-GP1BB, MIR4761, TXNRD2, C22orf39, TANGO2, COMT, LINC00895, MIR185, ARVCF, GNB1L, MRPL40, TBX1, CLDN5, HIRA, UFD1L, C22orf29, CDC45) 0.199244285710405 9 0.208639708056203 0.911872012325439 1319 0.414296207157349 3 3 0 -6.74727768802417 LTS-013 chr22 20052783 20098882 46100 * c(MIR1306, MIR3618, TANGO2, DGCR8) 0.444 1 NA 0.90780285657299 119 0.155899929648407 3 3 0 -5.76449115871108 LTS-013 chr22 20098883 22786669 2687787 * c(MIR301B, MIR1286, TUBA3FP, CRKL, LINC00896, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, TRMT2A, LOC284865, POM121L8P, YPEL1, ZDHHC8, SERPIND1, PI4KAP2, CCDC188, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, DGCR8, MAPK1, RANBP1, TMEM191C, RTN4R, SLC7A4, TMEM191B, PI4KAP1, NA, UBE2L3, VPREB1, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, DGCR6L, RIMBP3, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, NA NA NA NA NA NA NA NA NA LTS-013 BMS1P20) 0.382035668700567 84 0.104144336791921 0.87645896509743 3141 0.231021125156656 3 2 1 -6.75449428614292 LTS-013 NA NA NA NA LTS-013 chr22 22786670 22786730 61 * character(0) NA 0 NA 0.756 1 NA NA NA NA NA LTS-013 chr22 22786731 39779800 16993070 * c(DDTL, LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, IGLL5, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, ELFN2, C1QTNF6, ZNF280A, SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, ZNF280B, CRYBA4, NA NA NA NA NA NA NA NA NA LTS-013 CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, TMPRSS6, APOBEC3H, DDT, RNF215, APOBEC3A, APOBEC3F, EWSR1, MORC2, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, PRAME, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 C22orf31, GSTTP1, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, POM121L1P, TXN2, TMEM184B, GGA1, FBXW4P1, SEC14L3, RGL4, GGT1, SNORD43, GGT5, INPP5J, CYTH4, RSPH14, APOBEC3C, GNAZ, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, CARD10, UQCR10, VPREB3, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, IGLL1, IL2RB, KCNJ4, SDC4P, LRRC75B, LOC391322, LGALS1, LGALS2, LIF, LIMK2, CHCHD10, LOC400927, SRRD, MB, MCM5, MFNG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MIF, MMP11, MN1, MPST, PIWIL3, MIAT, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, DRICH1, EIF3L, RTCB, MTFP1, PDGFB, UPB1, POLR2F, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, PVALB, RAC2, RFPL1, APOBEC3G, RPL3, BCR, BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, LL22NC03-63E9.3, CES5AP1, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SMARCB1, SLC2A11, SNRPD3, SOX10, SSTR3, TCN2, TIMP3, TOP1P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MIR650, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, ZNF70, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, HPS4, GGTLC2, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, LARGE1, PICK1, GAL3ST1, GTPBP1, APOBEC3B, RAB36, DEPDC5, SFI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 JOSD1) 0.36789133213234 475 0.087728660370041 0.818690803535112 18378 0.284875325625301 3 2 1 -7.70871490732386 LTS-013 NA NA NA NA LTS-013 chr22 39779801 40161518 381718 * c(LOC100506472, TAB1, ENTHD1, MGAT3, ATF4, MIEF1, CACNA1I, SYNGR1, RPS19BP1) NA 0 NA 0.832669788484928 770 0.173700055342578 3 NA NA -5.81018550473222 LTS-013 chr22 40161519 40552119 390601 * c(LOC100130899, FAM83F, ENTHD1, TNRC6B, GRAP2) 0.225 1 NA 0.617470709505937 209 0.146802407706259 2 2 0 -5.93278771547355 LTS-013 chr22 40552120 42525972 1973853 * c(NDUFA6-AS1, MIR1281, MIR4766, SLC25A17, TOB2, TNFRSF13C, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, WBP2NL, POLR3H, EP300, TNRC6B, ZC3H7B, XRCC6, CSDC2, DESI1, SGSM3, MCHR1, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, MKL1, RANGAP1, XPNPEP3, SREBF2, ST13, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, SMDT1, RBX1) 0.235008908692572 69 0.088801269066913 0.643213573014103 3761 0.230176993075937 2 2 0 -6.92130762275775 LTS-013 chr22 42525973 42526566 594 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 1.626 1 NA NA NA NA NA LTS-013 chr22 42526567 42540389 13823 * c(NDUFA6-AS1, CYP2D7, CYP2D6) 0.179761084064398 5 0.12878548054808 1.1443566656241 66 0.578159710675996 3 3 0 -6.73986881088996 LTS-013 chr22 42540390 42540392 3 * CYP2D7 NA 0 NA 0.741 1 NA NA NA NA NA LTS-013 chr22 42540393 45609343 3068951 * c(MIR1249, NUP50-AS1, EFCAB6-AS1, NUP50, PACSIN2, PHF21B, NFAM1, PNPLA5, CYP2D7, CYB5R3, TTLL12, KIAA0930, ARHGAP8, SERHL2, TTLL1, SAMM50, SULT4A1, ARFGAP3, RNU12, ATP5L2, RRP7A, MCAT, PARVB, OGFRP1, LINC00207, LINC00229, A4GALT, PRR5-ARHGAP8, PRR5, BIK, PARVG, EFCAB6, TCF20, TSPO, MPPED1, SCUBE1, PNPLA3, LDOC1L, POLDIP3, KIAA1644, RRP7BP, SERHL) 0.245303524757257 119 0.0519870180896197 0.661620216938101 2770 0.219741086233684 2 2 0 -7.0496856000645 LTS-013 chr22 45609344 45622050 12707 * KIAA0930 NA 0 NA 0.506 1 NA NA NA NA NA LTS-013 chr22 45622051 49176184 3554134 * c(LINC00899, MIR3201, MIR3619, MIR4763, MIR4762, MIR4535, PKDREJ, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, KIAA0930, TBC1D22A, ATXN10, FAM19A5, RIBC2, SMC1B, LOC284933, MIRLET7BHG, LINC00898, MIRLET7A3, MIRLET7B, GTSE1, PPARA, FAM118A, TTC38, PRR34, TRMU, CERK, LOC730668, UPK3A, WNT7B, CELSR1) 0.291887996284195 54 0.0594403934825342 0.536365104585961 2406 0.140606363266043 1 1 0 -7.21273505858502 LTS-013 chr22 49176185 51183379 2007195 * c(LINC01310, CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, BRD1, NCAPH2, C22orf34, CHKB-CPT1B, IL17REL, ARSA, DENND6B, PIM3, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, PPP6R2, ZBED4, SCO2) 0.298054150491497 94 0.0683158316081892 0.50685561882949 3215 0.13320529678507 1 1 0 -6.74333996171903 LTS-013 chr22 51183380 51220846 37467 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.48938323733639 67 0.184294379628712 1 NA NA -5.76476671959891 LTS-013 chrX 2699993 2700027 35 * XG 0.287 1 NA 0.493 1 NA NA NA NA NA LTS-013 chrX 2700028 14749458 12049431 * c(GS1-600G8.3, LINC01546, LINC01203, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, TCEANC, FAM9A, FAM9B, FAM9C, MXRA5, EGFL6, AMELX, VCX, GLRA2, GPM6B, HCCS, ARSH, TLR8-AS1, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, TLR7, TLR8, VCX2, VCX3A, GEMIN8, WWC3, PRKX, PRPS2, NLGN4X, TRAPPC2, TBL1X, TMSB4X, MIR651, XG, PUDP, PNPLA4, OFD1, GYG2, ATXN3L, RAB9A, FRMPD4) 0.250948047491848 71 0.0844919173923031 0.559130372971102 4035 0.184412607217992 1 1 0 -8.79077277180838 LTS-013 chrX 14749459 30327367 15577909 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ASB11, ASB9, ZNF645, MOSPD2, MAGEB6, DDX53, SUPT20HL2, ARX, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, GLRA2, MAGEB18, GRPR, SH3KBP1, CA5BP1, DCAF8L2, MAGEB5, MAP3K15, NA NA NA NA NA NA NA NA NA LTS-013 YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, NHS, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, POLA1, PPEF1, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, MAGEB17, BMX, SMS, SCARNA23, CDKL5, LOC729609, ZFX, APOO, S100G, KLHL15, ZRSR2, PIR, INE2, AP1S2, REPS2, SYAP1, PCYT1B) 0.206235243943207 67 0.0937936956816158 0.67217844488222 7068 0.202406455898583 2 2 0 -7.10452117980863 LTS-013 NA NA NA NA LTS-013 chrX 30327368 30327794 427 * NR0B1 NA 0 NA 0.559871521856913 7 0.0435944513725794 1 NA NA -5.76607720494394 LTS-013 chrX 30327795 30577211 249417 * CXorf21 NA 0 NA 1.548 1 NA NA NA NA NA LTS-013 chrX 30577212 30577846 635 * CXorf21 0.497 1 NA 1.15519283363901 13 0.26197665779754 4 4 0 -5.76442350572081 LTS-013 chrX 30577847 32305810 1727964 * c(DMD, TAB3, GK, FTHL17, CXorf21) 0.464215935274068 8 0.0358167458839338 0.991024857979568 607 0.212078381056663 4 2 2 -7.7931307227187 LTS-013 chrX 32305811 47086347 14780537 * c(LOC100132831, ATP6AP2, FUNDC1, MAGEB16, CYBB, FAM47A, CXorf38, DDX3X, FAM47B, NA, DMD, HYPM, GPR82, GPR34, LINC01281, CFAP47, LANCL3, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, FTH1P18, FAM47C, NDP, OTC, CDK16, NDUFB11, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NYX, RP2, RPGR, DUSP21, ZNF674, NA, DYNLT3, TSPAN7, LINC01545, UBA1, KDM6A, XK, CXorf36, EFHC2, PPP1R2P9, USP9X, RBM10, TMEM47, NA NA NA NA NA NA NA NA NA LTS-013 SRPX, SLC9A7, INE1, CASK, RGN, MED14, SYTL5, JADE3) 0.369820259968247 40 0.14205776181648 0.863496537802418 4893 0.204995163685948 3 2 1 -7.08220545977111 LTS-013 NA NA NA NA LTS-013 chrX 47086348 47494985 408638 * c(SNORA11C, MIR4769, ELK1, ARAF, CDK16, CFP, SYN1, TIMP1, ZNF41, ZNF157, USP11) NA 0 NA 0.893741714999554 650 0.23618501814722 3 NA NA -5.76463623971868 LTS-013 chrX 47494986 47765799 270814 * c(UXT-AS1, ELK1, ZNF81, CXXC1P1, UXT) 0.212 1 NA 0.703706661504758 215 0.172163310232269 2 2 0 -5.7645226768725 LTS-013 chrX 47765800 53254618 5488819 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, KCND1, SPACA5, USP27X, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, PLP2, GPR173, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, NA NA NA NA NA NA NA NA NA LTS-013 SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYP, MIR532, TFE3, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, ZNF182, CACNA1F, MAGIX, MAGED4B, KDM5C, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, MAGED1, PAGE4) 0.239142849433435 28 0.0949202603246842 0.69856142080257 4440 0.180604605922189 2 2 0 -6.77174497653681 LTS-013 NA NA NA NA LTS-013 chrX 53254619 53262033 7415 * character(0) NA 0 NA 0.538 1 NA NA NA NA NA LTS-013 chrX 53262034 57618870 4356837 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, SMC1A, TSR2, FAM104B, PAGE5) 0.288964354915148 25 0.125424944355844 0.666552251382914 3220 0.167465167859554 2 2 0 -7.15560824751687 LTS-013 chrX 57618871 57937169 318299 * c(ZXDB, ZXDA) NA 0 NA 0.641026259372925 197 0.158942591147364 2 NA NA -5.82338478148711 LTS-013 chrX 61999880 62854814 854935 * c(SPIN4, LINC01278) 0 1 NA 0.657206583727937 100 0.177221918748355 2 2 0 -5.83022982992525 LTS-013 chrX 62854815 76937963 14083149 * c(MIR374B, MIR1468, FTX, MIR374C, MIR676, CDX4, VSIG4, MAP2K4P1, AMER1, OTUD6A, UPRT, MAGEE2, ASB12, CXorf65, AWAT1, AWAT2, ZDHHC15, DLG3, EDA, EFNB1, ABCB7, ARHGEF9, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, MIR374A, CITED1, MSN, NAP1L2, NA NA NA NA NA NA NA NA NA LTS-013 NONO, MIR384, OPHN1, P2RY4, RLIM, PDZD11, PBDC1, PHKA1, PIN4, CHIC1, NLGN3, ATRX, ERCC6L, GDPD2, JPX, MTMR8, HDAC8, ZC4H2, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, LAS1L, FRMD8P1, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, STARD8, HEPH, MED12) 0.209864515975889 70 0.101948451432488 0.670380022632078 7458 0.18640738954692 2 2 0 -7.17172674756482 LTS-013 NA NA NA NA LTS-013 chrX 76937964 76938005 42 * ATRX NA 0 NA 0.546 1 NA NA NA NA NA LTS-013 chrX 76938006 76972749 34744 * ATRX 0.33 1 NA 0.494450757479091 88 0.0872497339012029 1 1 0 -5.76486651922024 LTS-013 chrX 76972750 77041317 68568 * ATRX NA 0 NA 0.781 1 NA NA NA NA NA LTS-013 chrX 77041318 79830382 2789065 * c(MIR4328, CYSLTR1, COX7B, FAM46D, ZCCHC5, P2RY10, LPAR4, PGAM4, TBX22, TAF9B, PGK1, ATP7A, ATRX, MAGT1, GPR174, ITM2A) 0.213845955482427 14 0.0687936874180432 0.647707698967312 971 0.202614755411576 2 2 0 -6.97384993571911 LTS-013 chrX 79830383 79926362 95980 * BRWD3 NA 0 NA 0.855 1 NA NA NA NA NA LTS-013 chrX 79926363 80049239 122877 * BRWD3 NA 0 NA 0.82193136234587 277 0.172865988640843 3 NA NA -5.78474140322407 LTS-013 chrX 80049240 80063960 14721 * BRWD3 NA 0 NA 0.63 1 NA NA NA NA NA LTS-013 chrX 80063961 100530297 20466337 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, PABPC5, CSTF2, CYLC1, DIAPH2, DRP2, CENPI, BRWD3, NOX1, SRPX2, PCDH11X, RPS6KA6, FAM133A, RPA4, SATL1, ARL13A, XKRX, XRCC6P5, NAP1L3, CPXCR1, TAF7L, POU3F4, KLHL4, PCDH19, TMEM35A, TNMD, BRDTP1, SH3BGRL, TSPAN6, ZNF711, HMGN5, TRMT2B, POF1B, TGIF2LX, SYTL4) 0.171626426715839 39 0.119116484342451 0.646251199958972 3449 0.382883705435284 2 2 0 -7.3128317230245 LTS-013 chrX 100530298 100530920 623 * TAF7L NA 0 NA 0.445 1 NA NA NA NA NA LTS-013 chrX 100530921 100601337 70417 * c(TIMM8A, TAF7L) NA 0 NA 0.445941189595109 71 0.104052449628261 1 NA NA -5.81661699733653 LTS-013 chrX 100601338 100601353 16 * TIMM8A NA 0 NA 0.647 1 NA NA NA NA NA LTS-013 chrX 100601354 101473106 871753 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, TIMM8A, GLA, HNRNPH2, BEX5, ARMCX1, ARMCX3, ARMCX6, NXF5, RPL36A, BTK, ZMAT1, ARMCX2) 0.208764742018958 6 0.108899341901899 0.61593928418089 821 0.222462186527971 2 2 0 -6.9052251366353 LTS-013 chrX 101473107 101609294 136188 * character(0) NA 0 NA 0.136 1 NA NA NA NA NA LTS-013 chrX 101609295 101625090 15796 * character(0) NA 0 NA 0.139303563067361 39 0.249556183651939 0 NA NA -5.85357707747596 LTS-013 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.508 1 NA NA NA NA NA LTS-013 chrX 101768565 107978923 6210359 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, TSC22D3, NRK, TMEM31, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, TCEAL5, MORF4L2-AS1, VSIG1, SLC25A53, GLRA4, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, ZCCHC18, ARMCX5, SERPINA7, RNF128, MORC4, TCEAL4, NA NA NA NA NA NA NA NA NA LTS-013 ESX1, BHLHB9, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, RIPPLY1, TCEAL1, MORF4L2, GPRASP1) 0.162515044059085 28 0.141603080968186 0.622154974654645 4069 0.202146182647825 2 2 0 -7.88347531169199 LTS-013 NA NA NA NA LTS-013 chrX 107978924 107978942 19 * IRS4 NA 0 NA 0.574 1 NA NA NA NA NA LTS-013 chrX 107978943 114879418 6900476 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, MIR3978, RBMXL3, AMOT, DCX, ACSL4, KCNE5, GUCY2F, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, MIR448, NXT2, RGAG1, LRCH2, SNORA35, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, TMEM164, IRS4, CHRDL1, AMMECR1) 0.261855002169034 12 0.139752269998369 0.50489066624036 2371 0.124956207737714 1 1 0 -6.7954028396684 LTS-013 chrX 114879419 140993745 26114327 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR320D2, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, SLC6A14, MAGEC3, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, NA, NA, AGTR2, ELF4, CT83, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, NA NA NA NA NA NA NA NA NA LTS-013 LDOC1, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, PLS3, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, SPANXA2-OT1, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, SPANXC, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, NA NA NA NA NA NA NA NA NA NA NA NA LTS-013 USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.184725002853004 82 0.114607556690592 0.654098800036262 9988 0.207102065485903 2 2 0 -8.13332261212071 LTS-013 NA NA NA NA LTS-013 chrX 140993746 140993751 6 * MAGEC1 0.307 1 NA 1.749 1 NA NA NA NA NA LTS-013 chrX 140993752 146331737 5337986 * c(MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR514B, SLITRK4, SPANXN3, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, SLITRK2, TMEM257, MAGEC1) 0.288014328399573 11 0.0790317542625632 0.681743708408122 675 0.243393362711433 2 2 0 -7.24306060640442 LTS-013 chrX 146331738 146340273 8536 * MIR514B NA 0 NA 0.544 1 NA NA NA NA NA LTS-013 chrX 146340274 148628393 2288120 * c(FMR1-AS1, LINC00893, FMR1NB, FMR1, AFF2, IDS, MIR509-1, MIR510, MIR514A1, MIR514A2, CXorf40A) 0.344450842423415 6 0.0684205134931525 0.572988114623459 782 0.133041812213135 1 1 0 -8.12219814301462 LTS-013 chrX 148628394 148632090 3697 * CXorf40A 0.354 1 NA 0.389982880034474 40 0.254025991755134 1 1 0 -5.76656161223943 LTS-013 chrX 148632091 148664644 32554 * character(0) NA 0 NA 0.653 1 NA NA NA NA NA LTS-013 chrX 148664645 148854459 189815 * c(MAGEA11, TMEM185A) 0.317569479363603 4 0.210759736825293 0.640887900037093 123 0.455028723574262 1 1 0 -6.7702022262321 LTS-013 chrX 148854460 149012968 158509 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.773 1 NA NA NA NA NA LTS-013 chrX 149012969 151900018 2887050 * c(CSAG4, LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, MAGEA8-AS1, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA12, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.379696411764829 33 0.166782611185757 0.761547751416138 1599 0.395346356275168 2 1 1 -6.84303576708565 LTS-013 chrX 151900019 151909156 9138 * c(CSAG4, CSAG1, MAGEA12) 0.446 1 NA 0.771678390913815 27 0.270342728556162 2 2 0 -5.765112013576 LTS-013 chrX 151909157 153060106 1150950 * c(NA, NA, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, CSAG1, DUSP9, ABCD1, SRPK3, PNMA3, IDH3G, MAGEA1, MAGEA3, ATP2B3, NSDHL, PLXNB3, HAUS7, BGN, SLC6A8, SSR4, ZNF185, FAM58A) 0.444963341482627 39 0.034203250549884 0.750726587326039 1718 0.178421524739566 2 1 1 -7.15484653797875 LTS-013 chrX 153060107 153175586 115480 * c(L1CAM, ARHGAP4, AVPR2, PDZD4, SSR4) 0.469 1 NA 0.742715784582675 401 0.14686779018225 2 2 0 -5.77537653010966 LTS-013 chrX 153175587 154444695 1269109 * c(SMIM9, CMC4, MIR718, MIR3202-2, MIR3202-1, GAB3, TEX28, DKC1, DNASE1L1, EMD, F8, FLNA, G6PD, OPN1MW, GDI1, SNORA70, HCFC1, CTAG2, IRAK1, ARHGAP4, MECP2, MPP1, MTCP1, ATP6AP1, PLXNA3, OPN1LW, RENBP, FAM3A, RPL10, FUNDC2, SNORA36A, SNORA56, TAZ, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.223187186022819 9 0.236567643603262 0.735035498459142 2899 0.177876728319455 2 2 0 -6.78885582147949 LTS-013 chrX 154444696 154774986 330291 * c(RAB39B, CLIC2, TMLHE, VBP1) NA 0 NA 0.699311557546032 251 0.17338475971203 2 NA NA -5.76442996128984 LTS-013 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0900197541183199 25 0.0406748489036325 0 NA NA -20.1688337044277 LTS-013 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.653757510226153 19 0.656676551711154 2 NA NA -5.81607308384213 LTS-013 chr1 65893 762273 696381 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.426 1 NA 1.0664634083876 23 0.618585904898528 3 3 0 -5.79898269241357 LTS-014 chr1 762274 1116032 353759 * c(LOC100130417, SAMD11, LINC01342, TTLL10, NOC2L, FAM41C, KLHL17, AGRN, RNF223, MIR200A, MIR200B, C1orf159, MIR429, HES4, LINC01128, LINC00115, PLEKHN1, PERM1, ISG15) 0.457724358229579 24 0.0254930723752637 0.946824109164 872 0.195015353086941 2 1 1 -7.28926349339868 LTS-014 chr1 1116033 1153241 37209 * c(TTLL10, SDF4, TNFRSF4, TNFRSF18) 0 1 NA 0.931451656772676 164 0.217865275527589 2 2 0 -5.7657965651052 LTS-014 chr1 1153242 1594393 441152 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, LOC148413, DVL1, ATAD3C, SSU72, TMEM240, FAM132A, ANKRD65, SDF4, MXRA8, CPSF3L, AURKAIP1, MRPL20, ATAD3A, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, CPTP, CCNL2, TAS1R3, ATAD3B, MMP23B, CDK11B) 0.318553911221429 16 0.178853338427513 0.990107160871015 1868 0.261234273558463 3 2 1 -6.98460394042822 LTS-014 chr1 1594394 1594498 105 * c(SLC35E2B, CDK11B) 0.47 1 NA 0.976937900200345 3 0.166016063479813 2 2 0 -5.76443367948612 LTS-014 chr1 1594499 1608220 13722 * c(SLC35E2B, CDK11B) 0.384857428050635 4 0.0724632090558144 0.905881516809489 94 0.195492040642839 5 3 2 -6.89886096669206 LTS-014 chr1 1608221 1608229 9 * c(SLC35E2B, CDK11B) 0.443 1 NA 0.328 1 NA NA NA NA NA LTS-014 chr1 1608230 1636501 28272 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.244 1 NA 0.692661538788309 64 0.493077706606154 2 2 0 -5.76849004886241 LTS-014 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.011 1 NA NA NA NA NA LTS-014 chr1 1637054 1646770 9717 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.318457446850357 55 0.230749412962399 1 NA NA -5.78460186533315 LTS-014 chr1 1646771 1647806 1036 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.918 1 NA NA NA NA NA LTS-014 chr1 1647807 1670428 22622 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.433624743928746 23 0.0647988068986927 0.737357415207837 147 0.249327061505403 2 1 1 -6.74016715387413 LTS-014 chr1 1670429 7806189 6135761 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-014 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.438657444177253 175 0.0725423276020591 1.02951776244964 5396 0.295825192527441 2 1 1 -7.60226990433524 LTS-014 NA NA NA NA LTS-014 chr1 7806190 7807742 1553 * CAMTA1 NA 0 NA 0.824 1 NA NA NA NA NA LTS-014 chr1 7807743 12309478 4501736 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, NA NA NA NA NA NA NA NA NA LTS-014 SRM, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.437697373160219 127 0.106593070786321 0.904881061909363 6029 0.234198220127086 2 1 1 -6.76584662878436 LTS-014 NA NA NA NA LTS-014 chr1 12309479 12569154 259676 * c(VPS13D, SNORA59B) 0 1 NA 0.851121148233134 411 0.172871967800455 2 2 0 -5.7711183695788 LTS-014 chr1 12569155 12907803 338649 * c(AADACL3, AADACL4, HNRNPCL1, PRAMEF12, PRAMEF11, VPS13D, HNRNPCL3, PRAMEF1, DHRS3, C1orf158) 0.219148472728387 9 0.181422006505397 0.893556040322741 383 0.462566756224757 4 3 1 -7.11890771701871 LTS-014 chr1 12907804 12907885 82 * c(HNRNPCL1, HNRNPCL3) 0.36 1 NA 1.24176183186348 3 0.535884315874238 3 3 0 -5.76441025142536 LTS-014 chr1 12907886 16384843 3476958 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, TMEM82, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF2, PRAMEF22, NA, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.437814906090385 141 0.0941116040788264 0.940375423578411 2679 3.66744728991148 2 1 1 -6.73542985611065 LTS-014 chr1 16384844 16385178 335 * FAM131C 0.277 1 NA 1.2899965548346 5 0.306979966773078 3 3 0 -5.76441043278555 LTS-014 chr1 16385179 17046605 661427 * c(MST1P2, CROCCP3, ARHGEF19, EPHA2, SZRD1, ESPNP, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.327847745770062 48 0.0915074600687122 0.898118393225433 985 0.234191725836967 2 1 1 -7.43488548803234 LTS-014 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.547 1 NA NA NA NA NA LTS-014 chr1 17081542 17197666 116125 * c(MST1L, CROCC) 0.334831898895377 26 0.104821731452096 0.802359478941227 159 0.435640979628772 3 2 1 -6.81683862632838 LTS-014 chr1 17197667 17256850 59184 * CROCC 0.4 1 NA 0.807751134237813 34 0.207599341595815 2 2 0 -5.77081164065677 LTS-014 chr1 17256851 17263382 6532 * CROCC NA 0 NA 0.943879854373451 16 0.295120060314442 2 NA NA -5.76461544845163 LTS-014 chr1 17263383 17265332 1950 * CROCC NA 0 NA 1.341 1 NA NA NA NA NA LTS-014 chr1 17265333 19439123 2173791 * c(MIR4695, PADI2, IFFO2, KLHDC7A, UBR4, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.452681283994897 112 0.0604835240071143 0.989630677266256 2118 0.398828608583421 2 1 1 -6.90409480347657 LTS-014 chr1 19439124 21755143 2316020 * c(LOC100506730, LOC100506801, MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, EIF4G3, CDA) 0.448688473190544 56 0.0953782354219651 0.909863033430432 3071 0.24536179461245 2 1 1 -6.7717184433626 LTS-014 chr1 21755144 21755236 93 * character(0) NA 0 NA 1.221 1 NA NA NA NA NA LTS-014 chr1 21755237 21758671 3435 * character(0) 0.402337540606112 3 0.0875042856093346 1.23598603962259 70 0.420477182341165 5 3 2 -6.73677615679617 LTS-014 chr1 21758672 21771463 12792 * NBPF3 NA 0 NA 0.37 1 NA NA NA NA NA LTS-014 chr1 21771464 21808070 36607 * NBPF3 0.062 1 NA 0.562906184203531 39 0.279840008753797 1 1 0 -5.76985965067665 LTS-014 chr1 21808071 21808169 99 * NBPF3 NA 0 NA 0.896 1 NA NA NA NA NA LTS-014 chr1 21808170 22328228 520059 * c(CELA3A, CELA3B, ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3) 0.453568206544432 26 0.043763226572089 0.966958883582309 1060 0.323165101017336 2 1 1 -6.89140675678509 LTS-014 chr1 22328229 22329062 834 * c(CELA3A, CELA3B) 0.036 1 NA 0.810849555983053 5 0.152621099458758 2 2 0 -5.76456284043864 LTS-014 chr1 22329063 22855862 526800 * c(CELA3A, CELA3B, LINC00339, WNT4, ZBTB40, CDC42) 0.277292500020086 12 0.202717204872983 0.92912561354836 324 0.493909370337024 3 2 1 -6.92696991130214 LTS-014 chr1 22855863 22856601 739 * ZBTB40 0.413 1 NA 0.731651063247316 15 0.0736358478951529 2 2 0 -5.7672687896052 LTS-014 chr1 22856602 23289782 433181 * c(MIR4253, MIR4684, EPHA8, EPHB2, C1QA, C1QB, C1QC, ZBTB40) 0.458525714372026 7 0.0321010309877454 0.988750685227863 432 0.202318967623245 2 1 1 -7.1794800122312 LTS-014 chr1 23289783 23291632 1850 * character(0) NA 0 NA 0.733 1 NA NA NA NA NA LTS-014 chr1 23291633 31883207 8591575 * c(MATN1-AS1, MIR1976, MIR3115, MIR3917, TCEB3-AS1, MIR4420, MIR378F, RCAN3AS, PTPRU, WASF2, HNRNPR, SRRM1, CNKSR1, CD52, GMEB1, NUDC, RCC1, RCAN3, LYPLA2, RAB42, FAM46B, KDF1, CNR2, MYOM3, ZNF436-AS1, PDIK1L, IFNLR1, PAQR7, E2F2, FAM76A, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, KDM1A, WDTC1, TMEM50A, STX12, FUCA1, IFI6, ZNF683, GALE, MDS2, CLIC4, SYF2, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, NA NA NA NA NA NA NA NA NA LTS-014 LOC284632, HMGN2, HMGCL, HTR1D, ID3, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, NCMAP, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, ASAP3, PNRC2, PIGV, MTFR1L, RSRP1, PITHD1, MAN1C1, NIPAL3, SELENON, PTAFR, GRHL3, IL22RA1, RHCE, RHD, RPA2, RPL11, RPS6KA1, GPATCH3, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SNORA61, TAF12, TCEA3, SNORA16A, SNORD103C, SNORD99, SNORD103A, TCEB3, C1orf234, SLC30A2, LUZP1, LAPTM5, AUNIP, NKAIN1, LIN28A, FAM110D, DHDDS, ZNF436, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, RUNX3, STPG1, MAP3K6, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.433905204365196 249 0.0957579995335788 0.89487700236642 10155 0.217063351533508 2 1 1 -6.75523159439654 LTS-014 NA NA NA NA LTS-014 chr1 31883208 32265783 382576 * c(MIR4254, COL16A1, LINC01225, LINC01226, HCRTR1, SERINC2, PEF1, ADGRB2, TINAGL1, SPOCD1) 0.437158438924521 16 0.0483576950098603 0.988144253562367 865 0.251669135626131 2 1 1 -6.78434727745729 LTS-014 chr1 32265784 32265970 187 * SPOCD1 NA 0 NA 0.9 1 NA NA NA NA NA LTS-014 chr1 32265971 34006334 1740364 * c(FAM229A, MIR3605, KHDRBS1, AZIN2, TMEM54, CSMD2, RNF19B, A3GALT2, DCDC2B, ZNF362, PHC2, TXLNA, AK2, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, TRIM62, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, ZSCAN20, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.437455421373532 34 0.119022818705276 0.887310849837379 2731 0.224056840335333 2 1 1 -6.73467296791308 LTS-014 chr1 34006335 34006741 407 * CSMD2 NA 0 NA 1.389 1 NA NA NA NA NA LTS-014 chr1 34006742 35320017 1313276 * c(SMIM12, CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, C1orf94) 0.41193398833667 19 0.146930544119736 0.991002952417437 669 0.34051367576713 2 1 1 -6.83549170134298 LTS-014 chr1 35320018 35351188 31171 * c(SMIM12, DLGAP3) NA 0 NA 1.01661529441977 88 0.236578094674534 2 NA NA -5.77112037448603 LTS-014 chr1 35351189 35851648 500460 * c(TMEM35B, DLGAP3, SFPQ, LOC653160, ZMYM1, ZMYM4, ZMYM6) 0 1 NA 0.84474899197569 515 0.223989501523434 2 2 0 -5.77566499628812 LTS-014 chr1 35851649 36754722 903074 * c(C1orf216, COL8A2, AGO3, AGO4, NCDN, AGO1, TRAPPC3, TEKT2, TFAP2E, ADPRHL2, MAP7D1, PSMB2, CLSPN, KIAA0319L, ZMYM4, THRAP3) 0.293933237612941 10 0.231263894477475 0.878440141483181 1562 0.266370996762466 2 1 1 -6.94178853415166 LTS-014 chr1 36754723 36773405 18683 * c(SH3D21, THRAP3) 0.394 1 NA 0.903163969750576 81 0.239783259256673 2 2 0 -5.76451742219923 LTS-014 chr1 36773406 43708956 6935551 * c(LOC100129924, NFYC-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, ERMAP, TMCO2, ZNF684, C1orf122, OSCP1, COL9A2, CSF3R, MANEAL, CLDN19, CFAP57, CTPS1, CITED4, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, MACF1, MYCBP, HEYL, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, ZFP69, BMP8A, INPP5B, SVBP, MIR30C1, MIR30E, SLC2A1-AS1, FAM183A, MTF1, NA NA NA NA NA NA NA NA NA LTS-014 MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, EVA1B, PPT1, HIVEP3, RLF, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, MEAF6, EXO5, MRPS15, SLC2A1, ZFP69B, BMP8B, SNORA55, LINC01137, PPIEL, CCDC30, DNALI1, C1orf50, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZC3H12A, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, PABPC4, KCNQ4, RIMS3) 0.437849431332089 129 0.0964939436083984 0.885838944491242 7495 0.224251777928303 2 1 1 -6.73611845155599 LTS-014 NA NA NA NA LTS-014 chr1 43708957 44778936 1069980 * c(KDM4A-AS1, EBNA1BP2, MED8, KLF17, TMEM125, CFAP57, C1orf210, CCDC24, DPH2, SZT2, MPL, ATP6V0B, DMAP1, PTPRF, ELOVL1, ST3GAL3, SLC6A9, TIE1, ERI3, HYI, B4GALT2, ARTN, IPO13, KDM4A, CDC20) 0.459526209132105 32 0.0289799534439395 0.964507959019336 2013 0.219245370701536 2 1 1 -7.31176525108109 LTS-014 chr1 44778937 44785295 6359 * ERI3 NA 0 NA 0.805 1 NA NA NA NA NA LTS-014 chr1 44785296 66096234 21310939 * c(EFCAB14-AS1, LINC01135, MIR761, MIR3671, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR5584, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, C1orf87, CPT2, UBE2U, KNCN, MOB3C, GLIS1, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, NA NA NA NA NA NA NA NA NA LTS-014 LEXM, KANK4, DHCR24, DIO1, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, AK4, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, MMACHC, ACOT11, CYP4X1, BEST4, SNORD55, RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, FAM151A, C1orf228, TCTEX1D4, FAM159A, IPP, JAK1, JUN, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LEPR, LINC01144, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, MUTYH, NASP, NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HOOK1, HSPB11, CMPK1, PGM1, LURAP1, YIPF1, SPATA6, L1TD1, LEPROT, C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, POMGNT1, PRKAA2, NDC1, ZSWIM5, CACHD1, RAB3B, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, TAL1, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, TM2D1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, DOCK7, MKNK1, PLPP3, PTCH2, EIF2B3, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, TMEM59, EFCAB14, DNAJC6) 0.429210785198544 319 0.110857257583436 0.898067382678426 15029 0.252085708214625 2 1 1 -6.79671050872373 LTS-014 NA NA NA NA LTS-014 chr1 66096235 66098826 2592 * LEPR NA 0 NA 0.793 1 NA NA NA NA NA LTS-014 chr1 66098827 71530578 5431752 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, HHLA3, CTH, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, LEPR, C1orf141, PDE4B, PIN1P1, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, ZRANB2) 0.414053912915065 77 0.114099478727102 0.830660879163821 2971 0.229740603005163 2 1 1 -6.96500271929497 LTS-014 chr1 71530579 71530645 67 * c(ZRANB2-AS1, ZRANB2) NA 0 NA 0.899 1 NA NA NA NA NA LTS-014 chr1 71530646 78030358 6499713 * c(ZRANB2-AS1, PIGK, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, MIR186, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT, ZRANB2) 0.440595040306629 53 0.0946591049706585 0.896199649144586 2125 0.298482967965516 2 1 1 -6.74799024172946 LTS-014 chr1 78030359 89300826 11270468 * c(LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, GNG5, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.416574149258178 107 0.129107005768312 0.82897258880196 4407 0.616208708571664 2 1 1 -6.81062785771965 LTS-014 chr1 89300827 94041762 4740936 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, PKN2, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.441427754314488 47 0.0812903112837142 0.771309833073182 3435 0.200601099897155 2 1 1 -7.80315776503709 LTS-014 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.137 1 NA NA NA NA NA LTS-014 chr1 94047868 108735496 14687629 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, CNN3, SLC44A3, LRRC39, COL11A1, TMEM56, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, F3, NTNG1, SLC35A3, ABCA4, RWDD3, GCLM, AMY2A, AMY2B, SLC25A24, DNTTIP2, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, ABCD3, MFSD14A, ACTG1P4, NA NA NA NA NA NA NA NA NA LTS-014 MIR553, LOC729970, LOC729987, VCAM1, BCAR3, CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.427825544989056 88 0.10184044559217 0.832143524599882 4481 0.235247929745503 2 1 1 -7.23420575519381 LTS-014 NA NA NA NA LTS-014 chr1 108735497 108742573 7077 * SLC25A24 NA 0 NA 1.051 1 NA NA NA NA NA LTS-014 chr1 108742574 110881555 2138982 * c(AHCYL1, HENMT1, ATXN7L2, C1orf194, CSF1, NBPF4, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, NBPF6, SCARNA2, STXBP3, TAF13, EPS8L3, GPR61, PSRC1, STRIP1) 0.445824118123342 65 0.0873319595213926 0.894262764622911 3634 0.269622996150314 2 1 1 -6.7497804482412 LTS-014 chr1 110881556 115596036 4714481 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, PPM1J, KCNA2, KCNA3, KCNA10, KCND3, RHOC, MOV10, LOC440600, BCL2L15, PGCP1, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, LRIF1, CTTNBP2NL, FAM212B, OLFML3, RAP1A, CYMP, LOC643355, NA NA NA NA NA NA NA NA NA LTS-014 LOC643441, RBM15, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, DENND2D, SIKE1, CAPZA1, PROK1, SLC16A4, CD53, LRIG2) 0.443740287232001 121 0.0804751831089481 0.837228632575978 4827 0.219691742665789 2 1 1 -6.90074283458056 LTS-014 NA NA NA NA LTS-014 chr1 115596037 116948712 1352676 * c(TSPAN2, MAB21L3, ATP1A1, NGF, NHLH2, SLC22A15, VANGL1, CASQ2, ATP1A1-AS1) 0.454458602664475 37 0.0340262440666801 0.916647725132073 872 0.253112707690831 2 1 1 -6.98725799414141 LTS-014 chr1 116948713 117142613 193901 * c(IGSF3, ATP1A1-AS1, CD58) 0.254 1 NA 0.867947052208327 177 0.16558388794535 2 2 0 -5.76553928573345 LTS-014 chr1 117142614 117156490 13877 * IGSF3 0.24495649013902 14 0.0361538987607754 0.874870016971334 46 0.21149628884034 4 3 1 -6.9811766254102 LTS-014 chr1 117156491 117509981 353491 * c(MIR320B1, IGSF3, PTGFRN, CD2) 0.402 1 NA 0.884645259661083 147 0.183241115479067 2 2 0 -5.7644576134781 LTS-014 chr1 117509982 117753526 243545 * c(MIR942, PTGFRN, VTCN1, TRIM45, TTF2, CD101) 0.428808728673869 10 0.0428972933619101 0.875793075771408 488 0.372103563299851 2 1 1 -6.73803247566661 LTS-014 chr1 117753527 117753528 2 * VTCN1 0.498 1 NA 1.967 1 NA NA NA NA NA LTS-014 chr1 117753529 118071436 317908 * c(MAN1A2, VTCN1) 0.349997220641026 10 0.0649947861156741 1.13429754651212 239 0.279047199493245 3 2 1 -6.76922010663556 LTS-014 chr1 118071437 118165385 93949 * FAM46C NA 0 NA 0.809 1 NA NA NA NA NA LTS-014 chr1 118165386 120345229 2179844 * c(WARS2, WDR3, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, HAO2, GDAP2, FAM46C, LINC00622, TBX15, REG4, ZNF697) 0.4461986672011 44 0.0819654280495676 0.850900521935872 1308 0.236153585465291 2 1 1 -6.77973881081888 LTS-014 chr1 120345230 120535418 190189 * c(ADAM30, NBPF7, NOTCH2, REG4) 0.256 1 NA 0.846927669751935 405 0.195916674617625 2 2 0 -5.76936221200803 LTS-014 chr1 120535419 121310035 774617 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.327599658097043 23 0.108321035077755 0.994009687338263 236 1.48903030116684 3 2 1 -6.76218606140843 LTS-014 chr1 121310036 121313547 3512 * EMBP1 NA 0 NA 0.789014252293839 23 0.206344420236763 2 NA NA -5.76502694648021 LTS-014 chr1 143912360 144013853 101494 * FAM72D 0.374 1 NA 1.19386581308067 5 0.275028543973167 3 3 0 -5.76787289150421 LTS-014 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.309824633814865 58 0.0697737095073424 1.26294969335336 524 0.369429334596092 3 2 1 -6.88572232389684 LTS-014 chr1 145075855 145075923 69 * c(NBPF20, PDE4DIP) 0.151 1 NA 1.44250312321786 3 0.399230927325694 3 3 0 -5.76441404407935 LTS-014 chr1 145075924 145284513 208590 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.202437018080337 24 0.105691091791399 1.4312588746635 207 0.4022693624084 5 4 1 -6.84127268188287 LTS-014 chr1 145284514 152760308 7475795 * c(C1orf68, LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, LCE4A, NUDT17, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, CA14, LCE5A, NBPF14, LCE2B, GJA5, GJA8, RNF115, RIIAD1, NA NA NA NA NA NA NA NA NA LTS-014 THEM5, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, NOTCH2NL, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, KPRP, CRNN, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, LCE3D, ITGA10, PEX11B, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.257759777216639 90 0.0891496273403952 1.6258879454442 8312 1.18738863443877 4 3 1 -6.73855829513856 LTS-014 NA NA NA NA LTS-014 chr1 152760309 152770722 10414 * c(LCE1D, LCE1E) NA 0 NA 0.270401842315525 40 0.318770377930814 1 NA NA -5.78600807781936 LTS-014 chr1 152770723 155300910 2530188 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, S100A7A, LCE1A, LCE1B, LCE1C, IL6R, ILF2, IVL, KCNN3, C1orf189, LOR, SMCP, LCE6A, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, NA NA NA NA NA NA NA NA NA LTS-014 UBE2Q1, LENEP, SLC50A1, PGLYRP4, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.256702443066518 82 0.0560323295180516 1.67274912535934 5881 0.38386066506061 4 3 1 -6.74496340163688 LTS-014 NA NA NA NA LTS-014 chr1 155300911 155305038 4128 * character(0) NA 0 NA 1.25 1 NA NA NA NA NA LTS-014 chr1 155305039 155899614 594576 * c(MSTO2P, KIAA0907, SYT11, GON4L, MSTO1, YY1AP1, ASH1L, RIT1, ASH1L-AS1, POU5F1P4, SCARNA4, SNORA80E, MIR555, DAP3) 0 2 0 1.56107121339818 1172 0.354090793881329 0 0 0 -Inf LTS-014 chr1 155899615 158642025 2742411 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, CRABP2, LRRC71, TTC24, ETV3, KIAA0907, SMG5, LAMTOR2, HDGF, RXFP4, OR10R2, CYCSP52, INSRR, PEAR1, VHLL, OR10K2, OR10K1, OR6Y1, LMNA, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GPATCH4, KIRREL, PRCC, UBQLN4, RAB25, RHBG, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, SPTA1, SSR2, CCT3, MIR765, FCRL2, MRPL24, NA NA NA NA NA NA NA NA NA LTS-014 PAQR6, ISG20L2, FCRL5, FCRL4, TMEM79, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11) 0.24269558775198 126 0.0691627957608736 1.72511787989983 5039 0.485422252994111 4 3 1 -6.8005698721051 LTS-014 NA NA NA NA LTS-014 chr1 158642026 158644107 2082 * SPTA1 NA 0 NA 1.567 1 NA NA NA NA NA LTS-014 chr1 158644108 161561213 2917106 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, NA NA NA NA NA NA NA NA NA LTS-014 VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.257278489526126 105 0.0646049420307652 1.63329946245101 5108 1.16282742487377 4 3 1 -6.74123100847543 LTS-014 NA NA NA NA LTS-014 chr1 161561214 161561345 132 * FCGR2C NA 0 NA 0.806 1 NA NA NA NA NA LTS-014 chr1 161561346 161570512 9167 * FCGR2C 0.235785189003976 2 0.0876812408671319 0.941906843478414 50 0.454179545545412 9 7 2 -6.78406542089375 LTS-014 chr1 161570513 172100462 10529950 * c(MIR921, MIR1295A, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-014 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.246611201824557 167 0.0816755066827927 1.61254317778545 6917 0.474040783990246 4 3 1 -6.79322468049721 LTS-014 NA NA NA NA LTS-014 chr1 172100463 172100812 350 * DNM3 NA 0 NA 1.388 1 NA NA NA NA NA LTS-014 chr1 172100813 175097871 2997059 * c(MIR3120, LOC100506023, GAS5-AS1, DNM3OS, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.235554402000754 51 0.0604799691357946 1.5198486171835 2221 0.491599248499769 4 3 1 -6.93132212963643 LTS-014 chr1 175097872 175104871 7000 * TNN NA 0 NA 1.998 1 NA NA NA NA NA LTS-014 chr1 175104872 178819728 3714857 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TNN, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, KIAA0040) 0.244188379986978 27 0.101633930556954 1.76043394294317 1507 1.48700571805876 4 3 1 -6.76005020669012 LTS-014 chr1 178819729 183907258 5087530 * c(GM140, MIR3121, LHX4-AS1, ARPC5, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, IER5, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, TOR3A, SOAT1, CACNA1E, NPHS2, NPL, SHCBP1L, ACBD6, RGS8, LHX4, ANGPTL1, XPR1, CEP350, SMG7, FAM20B) 0.255771561818433 90 0.0670857650709601 1.6343576147435 5436 0.399366738791528 4 3 1 -6.75100843668132 LTS-014 chr1 183907259 200829147 16921889 * c(MIR181A1HG, GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, CFHR3, OCLM, TSEN15, FAM129A, ATP6V1G3, NEK7, DENND1B, F13B, COLGALT2, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, LINC00862, LHX9, PTGS2, PTPRC, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, NA NA NA NA NA NA NA NA NA LTS-014 CDC73, EDEM3, CFHR5, C1orf21, TRMT1L, DDX59, HMCN1, B3GALT2, KIF14) 0.22905872100147 103 0.0724952573988566 1.5208576385395 5943 0.427955884779264 4 3 1 -7.3095918177107 LTS-014 NA NA NA NA LTS-014 chr1 200829148 202287803 1458656 * c(MIR1231, MIR5191, TIMM17A, ARL8A, CSRP1, PTPRVP, SHISA4, ELF3, KIF21B, CAMSAP2, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, PTPN7, LGR6, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1, GPR37L1) 0.255688926170253 88 0.0673374043070326 1.79539901240585 2759 0.534834778324815 4 3 1 -6.76015583318346 LTS-014 chr1 202287804 203003838 716035 * c(PCAT6, KDM5B, SYT2, LOC148709, UBE2T, NA, PPP1R12B, ADIPOR1, CYB5R1, RABIF, KLHL12, LGR6, MGAT4EP, PPFIA4, TMEM183A) 0.270511180995503 32 0.0595933041134765 1.6020848879564 1140 0.382901530236873 4 3 1 -6.7436481381563 LTS-014 chr1 203003839 205571275 2567437 * c(ZBED6, LRRN2, CHI3L1, CHIT1, LINC00628, GOLT1A, ADORA1, MFSD4A, ELK4, PLEKHA6, NFASC, FMOD, DSTYK, OPTC, LINC00303, LEMD1-AS1, LOC284578, KISS1, TMEM81, MDM4, MIR135B, MYBPH, MYOG, ATP2B4, CDK18, PIK3C2B, LAX1, KLHDC8A, ETNK2, PRELP, RBBP5, REN, SNRPE, SNORA77, CNTN2, LINC01136, BTG2, NUAK2, LINC00260, PPP1R15B, PPFIA4, LEMD1, SOX13, ZC3H11A, TMCC2) 0.257211684903633 88 0.0777230896018827 1.73481093426081 3839 0.436237514820827 4 3 1 -6.75110097948147 LTS-014 chr1 205571276 227843214 22271939 * c(MIR320B2, MIR4260, MIR3122, MIR4742, LINC00538, LINC00210, BPNT1, CENPF, LEFTY1, IL24, DUSP10, SLC26A9, LYPLAL1, DNAH14, SPATA17, TATDN3, CR1, CR1L, CR2, PARP1, C1orf74, BROX, LOC148696, MFSD4A, PM20D1, CNIH3, SPATA45, FAM71A, CTSE, CD55, SDE2, CCDC185, EIF2D, ELK4, EPHX1, EPRS, ESRRG, FBXO28, SRGAP2, SLC41A1, SYT14, RAB3GAP2, INTS7, NSL1, RPS6KC1, RNU5F-1, DIEXF, LOC284581, LIN9, FLVCR1, CNIH4, NA NA NA NA NA NA NA NA NA LTS-014 PYCR2, NENF, IL19, H3F3A, HLX, HSD11B1, ZNF678, RD3, IL10, IRF6, ITPKB, MIA3, STUM, KCNH1, KCNK2, CAPN8, LAMB3, LBR, C1orf140, FAM177B, MIR194-1, MIR205, MIR215, MIR29C, MARK1, CD46, C1orf186, H3F3AP4, ATF3, NEK2, NVL, G0S2, IL20, RRP15, KCTD3, DTL, PFKFB2, PIGR, PLXNA2, MARC2, SUSD4, GPATCH2, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, SLC30A10, IARS2, HHAT, ENAH, RCOR3, SERTAD4, PROX1, PSEN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SMYD2, COQ8A, CAMK1G, SERTAD4-AS1, PTPN14, MIR205HG, FLVCR1-AS1, LYPLAL1-AS1, NUCKS1, ACBD3, MARC1, AIDA, SRGAP2C, SRP9, SNORA36B, AURKAPS1, SNORA16B, TGFB2, LEFTY2, TLR5, TP53BP2, TRAF5, C4BPA, C4BPB, TGFB2-AS1, FAM72A, USH2A, SLC30A1, C1orf116, C1orf115, HHIPL2, VASH2, WDR26, TRAF3IP3, CAPN2, RASSF5, MIXL1, FCAMR, DYRK3, CDC42BPA, LINC00467, DISP1, SLC45A3, DEGS1, RAB29, TAF1A, ANGEL2, FCMR, MAPKAPK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CD34, IKBKE, TMEM63A, LPGAT1) 0.258124112314196 327 0.0626478184810015 1.60752500177635 14684 0.410056628391056 4 3 1 -6.84384003586194 LTS-014 NA NA NA NA LTS-014 chr1 227843215 228871081 1027867 * c(NA, MIR3620, MIR4666A, MIR5008, SNAP47, MRPL55, HIST3H2BB, RNF187, IBA57, GUK1, ZNF678, PRSS38, ARF1, ZNF847P, TRIM17, GJC2, DUSP5P1, C1orf145, RHOU, JMJD4, WNT9A, C1orf35, TRIM11, HIST3H3, OBSCN, WNT3A, HIST3H2A) 0.242652139843393 54 0.0501578396156837 1.75156719690176 1908 0.452376646621294 4 3 1 -6.85283952469362 LTS-014 chr1 228871082 228871089 8 * RHOU NA 0 NA 1.509 1 NA NA NA NA NA LTS-014 chr1 228871090 233509425 4638336 * c(LINC00582, MIR1182, TSNAX-DISC1, SPHAR, CAPN9, CCSAP, C1orf131, EXOC8, LOC149373, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, TRIM67, EGLN1, MAP10, NUP133, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, PCNX2, SPRTN, NTPCR, GNPAT, MLK4, C1orf198, URB2) 0.260626248342743 74 0.0701293721715084 1.61372156204291 3486 0.391594577456907 4 3 1 -6.75430501376331 LTS-014 chr1 233509426 236894601 3385176 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.263038030721902 32 0.0864746606555 1.51261702384597 2405 0.414988404859612 4 3 1 -6.84312672779834 LTS-014 chr1 236894602 236894647 46 * ACTN2 0.188 1 NA 3.776 1 NA NA NA NA NA LTS-014 chr1 236894648 249143646 12248999 * c(AKT3, LOC100130331, MIR3123, MIR3124, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, NA NA NA NA NA NA NA NA NA LTS-014 OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, LYPD8, SMYD3, LINC01347, ZNF124, ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.241145549742419 170 0.0776640343250118 1.62982500417551 6369 0.637985472506161 4 3 1 -6.79652191390746 LTS-014 NA NA NA NA LTS-014 chr1 249143647 249214134 70488 * c(PGBD2, ZNF692, ZNF672) NA 0 NA 1.47201470327598 157 0.276192461009595 4 NA NA -5.77300999625384 LTS-014 chr2 38824 39555 732 * FAM110C 0.488 1 NA 1.20387090412864 13 0.235079964572887 3 3 0 -5.76443615378743 LTS-014 chr2 39556 668933 629378 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0.327641951618783 3 0.0327465010853577 1.12268677380281 305 0.249645558794633 3 2 1 -7.00127024136262 LTS-014 chr2 668934 3197982 2529049 * c(TMEM18, MYT1L, LINC01115, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.317083871547624 18 0.090104441941096 1.36168616478046 707 0.40459247504322 3 2 1 -6.83183735102884 LTS-014 chr2 3197983 3200643 2661 * TSSC1 NA 0 NA 1.213 1 NA NA NA NA NA LTS-014 chr2 3200644 26616254 23415611 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-014 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, SELENOI, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.318009371036137 236 0.0860524517376123 1.23705433903898 10547 0.340483665661065 3 2 1 -6.90092776152759 LTS-014 NA NA NA NA LTS-014 chr2 26616255 27548546 932292 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.339606781289259 17 0.0507979706634961 1.36521505134276 2156 0.287358804970436 3 2 1 -6.77252645151283 LTS-014 chr2 27548547 27548700 154 * MPV17 NA 0 NA 1.251 1 NA NA NA NA NA LTS-014 chr2 27548701 30865405 3316705 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.335540325676734 84 0.0701703228660823 1.22569028206575 3561 0.300620505891435 3 2 1 -6.77872699042102 LTS-014 chr2 30865406 30953611 88206 * c(LCLAT1, CAPN13) NA 0 NA 0.647148228842492 40 0.449652309411365 1 NA NA -5.78470435580698 LTS-014 chr2 30953612 31758773 805162 * c(EHD3, CAPN14, SRD5A2, XDH, GALNT14, CAPN13) 0.318514231751801 17 0.0597324918970847 1.37041564618121 683 0.392484776983245 3 2 1 -6.86877727917942 LTS-014 chr2 31758774 37014939 5256166 * c(LOC100271832, LOC100288911, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, LTBP1, MEMO1, CRIM1, VIT, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, YIPF4, DPY30, FEZ2) 0.312931788045465 22 0.0766173519166423 1.2063173066743 1986 0.302145816147481 3 2 1 -6.9426172601566 LTS-014 chr2 37014940 40339925 3324986 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.321418966415994 34 0.0834273836473732 1.13634757578602 2900 0.295380855321163 3 2 1 -7.07031948614483 LTS-014 chr2 40339926 60689645 20349720 * c(MIR216B, SLC8A1-AS1, LINC01126, LINC01119, MIR3682, MIR4432, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, OXER1, KCNG3, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, ASB3, NA NA NA NA NA NA NA NA NA LTS-014 DYNC2LI1, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, RPS27A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, VRK2, CAMKMT, FBXO11, CALM2, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, ACYP2) 0.32343525272693 139 0.0778204967560484 1.22630498877393 7891 0.383199721181307 3 2 1 -6.90316279242718 LTS-014 NA NA NA NA LTS-014 chr2 60689646 60695816 6171 * BCL11A NA 0 NA 1.174 1 NA NA NA NA NA LTS-014 chr2 60695817 70889692 10193876 * c(SNORA36C, SNORA70B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, ADD2, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, LINC01185, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PEX13, NA NA NA NA NA NA NA NA NA LTS-014 BCL11A, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, REL, GMCL1, LOC644838, PAPOLG, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, KIAA1841, FAM136A, USP34, SERTAD2, ARHGAP25) 0.326655096545765 113 0.094821261258218 1.16816845062343 5936 0.325024365600884 3 2 1 -7.16867014583257 LTS-014 NA NA NA NA LTS-014 chr2 70889693 73520717 2631025 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EGR4, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.323064642562475 46 0.110397962594097 1.32491232421359 2642 0.333387297293563 3 2 1 -6.77857791096999 LTS-014 chr2 73520718 87357298 13836581 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, NA NA NA NA NA NA NA NA NA LTS-014 REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.32335638648904 118 0.100711450071855 1.24016663243135 6950 0.296015892646231 3 2 1 -6.83278698687816 LTS-014 NA NA NA NA LTS-014 chr2 87357299 87364675 7377 * RMND5A NA 0 NA 2.105 1 NA NA NA NA NA LTS-014 chr2 87364676 88056522 691847 * c(CYTOR, RMND5A) 0.242988423103315 7 0.0786126731574012 2.24958208243232 133 0.642677417473224 5 4 1 -6.82031053498016 LTS-014 chr2 88056523 91937761 3881239 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, LOC654342, EIF2AK3) 0.33721743911517 34 0.115375246111676 1.28742213980452 930 0.78110716626243 3 2 1 -6.73643577577852 LTS-014 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.22100256704315 16 0.235235909957076 3 NA NA -5.7647672288644 LTS-014 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.308 1 NA 1.553 1 NA NA NA NA NA LTS-014 chr2 95537246 95848354 311109 * c(TEKT4, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.11299881904224 9 0.16391156152023 1.33541820507948 285 0.412969939064326 3 3 0 -6.85806929666945 LTS-014 chr2 95848355 95945568 97214 * c(PROM2, ZNF2) 0.364 1 NA 1.38465767124454 93 0.314703994287601 3 3 0 -5.76843087265407 LTS-014 chr2 95945569 96504630 559062 * c(TRIM43, PROM2, KCNIP3, FAHD2A, TRIM43B) 0.307123379512379 5 0.0404820948074578 1.29827698699871 386 0.3733872267619 3 2 1 -7.22796671134892 LTS-014 chr2 96504631 96521008 16378 * character(0) NA 0 NA 0.962 1 NA NA NA NA NA LTS-014 chr2 96521009 96610921 89913 * character(0) 0.309962462406006 10 0.160028782133437 0.867054957341689 54 0.289653841091362 3 2 1 -6.85639639435415 LTS-014 chr2 96610922 96616442 5521 * character(0) 0.22 1 NA 0.711621990611612 7 0.437554459195544 2 2 0 -5.765208927109 LTS-014 chr2 96616443 96617155 713 * character(0) 0.204293172416188 11 0.0331928250735552 0.945002227800653 17 0.263170083115575 10 8 2 -6.75082198571202 LTS-014 chr2 96617156 96619688 2533 * character(0) 0.296 1 NA 0.709119538595988 3 0.296626027179005 2 2 0 -5.76523375203337 LTS-014 chr2 96619689 96652882 33194 * character(0) 0.276393011037701 2 0.00989949493661164 0.865150694425003 17 0.169627251383039 4 3 1 -7.76919266177676 LTS-014 chr2 96652883 96657254 4372 * character(0) NA 0 NA 1.461 1 NA NA NA NA NA LTS-014 chr2 96657255 96952833 295579 * c(GPAT2, ADRA2B, DUSP2, SNRNP200, STARD7-AS1, ASTL, TMEM127, STARD7, FAHD2CP, CIAO1) 0.306356700307434 7 0.0739272486654149 1.25694119817894 617 0.299811993165148 3 2 1 -6.89649460943038 LTS-014 chr2 96952834 97329244 376411 * c(ARID5A, ITPRIPL1, SNRNP200, NCAPH, KANSL3, FER1L5, NEURL3) NA 0 NA 1.25642832257668 620 0.260459947954593 3 NA NA -5.76511252363854 LTS-014 chr2 97329245 97559759 230515 * c(MIR3127, ANKRD23, CNNM4, CNNM3, ANKRD39, FAM178B, SEMA4C, LMAN2L, FER1L5) 0.075 1 NA 0.920564272813036 697 0.190950576442814 2 2 0 -5.77126723583074 LTS-014 chr2 97559760 97827766 268007 * c(FAHD2B, ANKRD36, FAM178B) 0.0490845559026296 7 0.0159239262925771 0.911753573955993 197 0.281925722801682 2 2 0 -6.81838556789309 LTS-014 chr2 97827767 97827787 21 * ANKRD36 0.214 1 NA 0.455 1 NA NA NA NA NA LTS-014 chr2 97827788 97928111 100324 * ANKRD36 0.072717905901817 5 0.072069410986909 0.568653875452133 42 0.463330825785542 1 1 0 -6.81894848150305 LTS-014 chr2 97928112 98128186 200075 * c(ANKRD36, ANKRD36B) NA 0 NA 1.661 1 NA NA NA NA NA LTS-014 chr2 98128187 121109413 22981227 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, DBI, LONRF2, CCDC138, C1QL2, FOXD4L1, CFAP221, VWA3B, CREG2, EN1, NA NA NA NA NA NA NA NA NA LTS-014 LINC00116, FHL2, TMEM131, PSD4, LYG2, UNC50, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, LINC01191, SULT1C3, NPAS2, NPHP1, COA5, INSIG2, MRPL30, REV1, LIPT1, MIR4435-2HG, CCDC93, POU3F3, STEAP3, ACOXL, CNOT11, IL36G, DPP10, EPB41L5, ANKRD36B, PTPN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, LINC01125, RGPD4-AS1, RFX8, ZAP70, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, UXS1, SLC35F5, TSGA10, TMEM177, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 EIF5B) 0.0539968289754173 246 0.0404271756242388 0.86291692591312 11890 0.550388870395342 2 2 0 -6.75564310345352 LTS-014 NA NA NA NA LTS-014 chr2 121109414 121223153 113740 * LINC01101 NA 0 NA 1.114 1 NA NA NA NA NA LTS-014 chr2 121223154 121974495 751342 * c(GLI2, TFCP2L1, LINC01101) 0.0477705273368203 4 0.00387298334620741 1.08834931348248 184 0.420696151410486 2 2 0 -8.44816323809996 LTS-014 chr2 121974496 129076016 7101521 * c(RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, TSN, SAP130, AMMECR1L, NIFK, SFT2D3, HS6ST1) 0.0526996605000883 49 0.0717634116029747 0.895575886121006 3038 0.282902618908092 2 2 0 -6.74566531859753 LTS-014 chr2 129076017 130737578 1661562 * c(RAB6C-AS1, LOC389033, RAB6C, HS6ST1) 0.426 1 NA 0.973816485397201 11 0.405484917329632 2 2 0 -5.82299551334543 LTS-014 chr2 130737579 130988421 250843 * c(RAB6C-AS1, TUBA3E, MED15P9, FAR2P1, SMPD4, POTEF, MZT2B, RAB6C, CCDC74B) 0.366769392958135 10 0.131124029495402 0.866697912166251 384 0.80414047205564 3 2 1 -6.78333881161115 LTS-014 chr2 130988422 131487897 499476 * c(CYP4F30P, FAR2P2, PTPN18, GPR148, CFC1, POTEI, CFC1B, POTEJ, CCDC115, IMP4) 0.03 1 NA 0.949147669165901 301 0.253637759284106 2 2 0 -5.78921316484777 LTS-014 chr2 131487898 132121217 633320 * c(FAM168B, WTH3DI, AMER3, GPR148, LOC440910, POTEE, ARHGEF4, PLEKHB2) 0.0452455487413369 8 0.0507261555525634 0.901225426816405 488 0.333107584028718 2 2 0 -6.7569355862426 LTS-014 chr2 132121218 132200763 79546 * c(WTH3DI, LINC01120, NOC2LP2) 0.078 1 NA 0.727748370440086 43 0.21058985345628 2 2 0 -5.80402279672794 LTS-014 chr2 132200764 132229745 28982 * NOC2LP2 NA 0 NA 0.49787664218298 65 0.30720224796353 1 NA NA -5.76446148632969 LTS-014 chr2 132229746 132233626 3881 * TUBA3D NA 0 NA 1.003 1 NA NA NA NA NA LTS-014 chr2 132233627 132236963 3337 * TUBA3D 0.263 1 NA 1.08217546757222 13 0.277234511486168 3 3 0 -5.76510900510804 LTS-014 chr2 132236964 133014678 777715 * c(MIR663B, MIR4784, TUBA3D, LOC150776, C2orf27A, C2orf27B, ANKRD30BL, MZT2A, CCDC74A) 0.316743862487133 12 0.114880537423829 0.8799314249692 278 0.366205584547115 3 2 1 -7.21389201725553 LTS-014 chr2 133014679 133174764 160086 * c(GPR39, ANKRD30BL) 0.057 1 NA 0.952567072455427 17 0.167110829726157 2 2 0 -5.78458437132795 LTS-014 chr2 133174765 135713380 2538616 * c(CCNT2-AS1, MIR3679, LYPD1, ACMSD, GPR39, NCKAP5, MGAT5, TMEM163, CCNT2) 0.0496046912212554 17 0.0339697096907022 0.916476718662061 775 0.267430900816786 2 2 0 -6.77917574055306 LTS-014 chr2 135713381 137852726 2139346 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) 0.0547148677902441 28 0.0835815667888459 0.81712291332882 1275 0.24763400362239 2 2 0 -6.85358328259821 LTS-014 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.205 1 NA NA NA NA NA LTS-014 chr2 137872656 142889228 5016573 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.0655592564888054 21 0.0888367148467451 0.919594501259238 979 0.287480754467204 2 2 0 -6.80344922802276 LTS-014 chr2 142889229 143787204 897976 * c(LRP1B, KYNU) NA 0 NA 1.40251153550182 61 0.152140445971959 3 NA NA -5.96938360476084 LTS-014 chr2 143787205 143790861 3657 * KYNU NA 0 NA 0.684 1 NA NA NA NA NA LTS-014 chr2 143790862 167168093 23377232 * c(TANK, LOC100144595, ZEB2-AS1, SNORA70F, LOC100506124, TTC21B-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, SLC38A11, WDSUB1, UPP2, DPP4, FAP, COBLL1, PLA2R1, GCA, GALNT3, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, NA NA NA NA NA NA NA NA NA LTS-014 PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, SCN1A, SCN2A, SCN3A, SCN9A, IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, TTC21B, CSRNP3, PKP4, TANC1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.0534676082992752 130 0.0330368589441678 0.845579775096164 9514 0.395111746136272 2 2 0 -6.89190206775075 LTS-014 NA NA NA NA LTS-014 chr2 167168094 167334085 165992 * c(SCN7A, SCN9A) 0.048 1 NA 0.874248044956918 191 0.477112803344144 2 2 0 -5.76444621356468 LTS-014 chr2 167334086 167334260 175 * SCN7A NA 0 NA 0.798562980580681 5 0.0539768468882724 2 NA NA -5.76476580764364 LTS-014 chr2 167334261 167759934 425674 * c(XIRP2, SCN7A) NA 0 NA 1.52 1 NA NA NA NA NA LTS-014 chr2 167759935 168116260 356326 * XIRP2 0.0364289115851941 12 0.00760183390951675 1.57545383417407 295 0.475036378345657 3 3 0 -6.80466147961106 LTS-014 chr2 168725424 169104137 378714 * c(STK39, B3GALT1) 0.0518862342130966 2 0.00848528137423856 0.939329331590872 154 0.323269899518669 2 2 0 -6.82406667339368 LTS-014 chr2 169104138 170367468 1263331 * c(MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, BBS5, CERS6, LRP2, SPC25, G6PC2, ABCB11) 0.0251135877561215 31 0.0164060702115085 1.62521993137397 1151 0.583904496721105 4 4 0 -6.77069232146451 LTS-014 chr2 170367469 170371056 3588 * KLHL41 NA 0 NA 0.614 1 NA NA NA NA NA LTS-014 chr2 170371057 171092711 721655 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, UBR3, MYO3B, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.0530694362141821 12 0.0262001330091465 0.776369202245899 861 0.207811468354896 2 2 0 -6.89595744074055 LTS-014 chr2 171092712 171191885 99174 * MYO3B NA 0 NA 1.582 1 NA NA NA NA NA LTS-014 chr2 171191886 179263693 8071808 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, MYO3B, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, PDE11A, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, NA NA NA NA NA NA NA NA NA LTS-014 METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, RAPGEF4-AS1, TTC30A, CIR1, TLK1) 0.0246942792171273 96 0.0159286649918018 1.59382526510451 5283 0.474976784089108 4 4 0 -6.82314150483545 LTS-014 NA NA NA NA LTS-014 chr2 179263694 179296271 32578 * c(MIR548N, OSBPL6, PRKRA) 0.174 1 NA 1.42539906158032 15 0.29915065483083 3 3 0 -5.76713173136111 LTS-014 chr2 179296272 179400586 104315 * c(MIR548N, TTN-AS1, DFNB59, FKBP7, PLEKHA3, TTN, PRKRA) 0.139098917187932 12 0.0735582638581022 1.51660406037879 446 0.373813791267315 7 6 1 -6.93350281235074 LTS-014 chr2 179400587 179401740 1154 * c(MIR548N, TTN-AS1, TTN) 0.036 1 NA 1.35187003441086 21 0.444792075554624 3 3 0 -5.76442217917404 LTS-014 chr2 179401741 183960713 4558973 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, TTN, SESTD1) 0.0321727956938731 114 0.0174026446728204 1.54875762782842 4720 0.429401024046641 4 4 0 -6.83076811722458 LTS-014 chr2 183960714 187523937 3563224 * c(NUP35, DUSP19, ITGAV, FSIP2, ZC3H15, ZNF804A) 0.0297696722280779 34 0.0162351261971734 1.72742345106358 983 0.784208647730278 4 4 0 -6.73823211898459 LTS-014 chr2 187523938 187528432 4495 * ITGAV NA 0 NA 1.043 1 NA NA NA NA NA LTS-014 chr2 187528433 188296155 767723 * c(CALCRL, ZSWIM2, FAM171B, ITGAV) 0.0344511433204648 21 0.0198239873938236 1.21358619720922 476 0.41536646700845 3 3 0 -6.75994103675479 LTS-014 chr2 188296156 188329010 32855 * c(CALCRL, TFPI) NA 0 NA 1.535 1 NA NA NA NA NA LTS-014 chr2 188329011 192711894 4382884 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, DIRC1, COL3A1, COL5A2, ANKAR, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, GULP1, PMS1, ASNSD1, MFSD6, OSGEPL1, NABP1, STAT1, STAT4, MIR561, TFPI, WDR75, C2orf88, SDPR, ORMDL1) 0.0266371649543301 49 0.0133841717869194 1.5836692514676 3055 0.619061338108119 4 4 0 -6.7723611957548 LTS-014 chr2 192711895 192711978 84 * SDPR NA 0 NA 1.528 1 NA NA NA NA NA LTS-014 chr2 192711979 198651335 5939357 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, TMEFF2, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, DNAH7, SLC39A10, HECW2, PCGEM1, BOLL, PGAP1, COQ10B, SDPR, ANKRD44, STK17B, MARS2, GTF3C3) 0.0249165866636756 18 0.0172415556673424 1.42943654986524 2402 0.338783683669764 4 4 0 -7.42747251052503 LTS-014 chr2 198651336 198669447 18112 * PLCL1 NA 0 NA 1.784 1 NA NA NA NA NA LTS-014 chr2 198669448 203826688 5157241 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SPATS2L, FAM126B, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.0253011888482773 56 0.0177281693079964 1.53073612339634 3980 0.505977408312657 4 4 0 -6.84837722834292 LTS-014 chr2 203826689 214794768 10968080 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, MAP2, MYL1, NDUFS1, INO80D, CYP20A1, PTH2R, ZDBF2, NA NA NA NA NA NA NA NA NA LTS-014 RPE, SNORA41, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.0283292724224171 133 0.0133936066472134 1.63013076774138 6242 0.563650671105014 4 4 0 -6.74588071812563 LTS-014 NA NA NA NA LTS-014 chr2 214794769 220249252 5454484 * c(LOC100129175, MIR3131, ABCB6, VWC2L-IT1, ARPC2, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, FN1, DNPEP, CFAP65, PNKD, ABCA12, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, VWC2L, MIR153-1, MIR26B, ATIC, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, BARD1, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, NA NA NA NA NA NA NA NA NA LTS-014 SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, SPAG16, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.0369651088026578 90 0.0201948343848176 1.28082708532363 6016 0.442865342450042 3 3 0 -6.73535169739569 LTS-014 NA NA NA NA LTS-014 chr2 220249253 220250112 860 * DNPEP NA 0 NA 1.458 1 NA NA NA NA NA LTS-014 chr2 220250113 224616644 4366532 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, GMPPA, INHA, PAX3, ASIC4, SLC4A3, SCG2, CHPF) 0.0362174138363327 51 0.0160969854686047 1.37811765172923 2045 0.471634050651926 3 3 0 -6.81204741356917 LTS-014 chr2 224616645 224616743 99 * character(0) NA 0 NA 1.252 1 NA NA NA NA NA LTS-014 chr2 224616744 231333852 6717109 * c(MIR4439, MIR5702, MIR5703, SP140, COL4A3, COL4A4, AP1S3, FBXO36, SLC16A14, DAW1, AGFG1, SP110, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SP100, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER, TRIP12, SP140L) 0.0341069855502664 70 0.0220023525939554 1.20033928871484 3642 0.327554967758098 3 3 0 -6.88600720686598 LTS-014 chr2 231333853 231334010 158 * SP100 0.444 1 NA 0.669576134365483 4 0.507047335068433 2 2 0 -5.76443800491434 LTS-014 chr2 231334011 231684527 350517 * c(LOC151475, CAB39, SP100) 0.041806318727248 9 0.0169000328730778 1.10805519638823 202 0.325766305544764 3 3 0 -6.8001823414884 LTS-014 chr2 231684528 233245141 1560614 * c(MIR1471, MIR4777, NMUR1, DIS3L2, SPATA3, LINC00471, LOC151484, C2orf57, ALPP, C2orf72, SNORD82, HTR2B, SPATA3-AS1, NCL, NPPC, PDE6D, CAB39, PSMD1, PTMA, SNORD20, COPS7B, SNORA75, ARMC9, ITM2C, GPR55, B3GNT7) 0.0790171285815568 19 0.0959935731279514 1.28657508968992 1313 0.422676823960821 3 3 0 -6.84046190167145 LTS-014 chr2 233245142 233272825 27684 * c(ALPP, ALPPL2, ECEL1P2) NA 0 NA 1.55979067584582 70 0.593510287603074 4 NA NA -5.76461999954482 LTS-014 chr2 233272826 233272961 136 * ALPPL2 NA 0 NA 1.144 1 NA NA NA NA NA LTS-014 chr2 233272962 233274832 1871 * ALPPL2 NA 0 NA 0.644547012829088 40 0.489204429372781 1 NA NA -5.764764379739 LTS-014 chr2 233274833 233310297 35465 * ALPPL2 0 1 NA 1.39402205064098 13 1.03971898940198 3 3 0 -5.7645674287291 LTS-014 chr2 233310298 233410913 100616 * c(CHRND, CHRNG, ALPI, PRSS56, ECEL1) 0.0343770511970087 13 0.020484202793923 1.38084845934679 373 0.410423831242404 3 3 0 -6.75525378724974 LTS-014 chr2 233410914 233410922 9 * CHRNG 0.065 1 NA 0.18 1 NA NA NA NA NA LTS-014 chr2 233410923 235964366 2553444 * c(LOC100286922, ARL4C, CHRNG, MSL3P1, TIGD1, SH3BP4, NGEF, GIGYF2, INPP5D, KCNJ13, C2orf82, DNAJB3, NEU2, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, SAG, SPP2, SCARNA6, SCARNA5, TRPM8, EFHD1, DGKD, EIF4E2) 0.0355403352431585 73 0.0161081651114343 1.23935017974574 2555 0.383200643375557 3 3 0 -6.756638618547 LTS-014 chr2 235964367 236402922 438556 * AGAP1 NA 0 NA 0.532 1 NA NA NA NA NA LTS-014 chr2 236402923 237186132 783210 * c(AGAP1, GBX2, ASB18) 0.0619953124542125 4 0.0247722963543283 0.584975328397609 315 0.255823956134294 2 2 0 -7.79787161735279 LTS-014 chr2 237186133 237232753 46621 * character(0) NA 0 NA 1.165 1 NA NA NA NA NA LTS-014 chr2 237232754 237490954 258201 * c(ACKR3, IQCA1) 0.0094267801029489 2 0.0261629509039023 1.33954581024705 167 0.471903867874713 5 5 0 -7.03053164185635 LTS-014 chr2 237993918 238007172 13255 * COPS8 0.0980074611079187 2 0.00848528137423857 0.513654690095638 82 0.159765412565088 1 1 0 -6.7446289320563 LTS-014 chr2 238007173 238009099 1927 * COPS8 NA 0 NA 0.483660365883159 39 0.120609607672391 1 NA NA -5.76442210439518 LTS-014 chr2 238009100 238165641 156542 * character(0) NA 0 NA 1.034 1 NA NA NA NA NA LTS-014 chr2 238165642 238166147 506 * character(0) 0.431 1 NA 1.06191958133443 7 0.137320445534905 3 3 0 -5.76494656088379 LTS-014 chr2 238166148 238483475 317328 * c(COL6A3, PRLH, RAB17, MLPH) 0.480954286113297 11 0.0235576661909374 0.87584227536549 501 0.199076601511732 2 1 1 -8.56089046921098 LTS-014 chr2 238483476 238483654 179 * RAB17 0.443 1 NA 0.749675719028263 7 0.108807168881467 2 2 0 -5.76464922989311 LTS-014 chr2 238483655 238536392 52738 * c(RAB17, LRRFIP1) 0.418046457354454 9 0.107937610580269 0.904590597945963 67 0.251663160692165 2 1 1 -6.74438876391851 LTS-014 chr2 238536393 238896495 360103 * c(UBE2F-SCLY, RAMP1, UBE2F, RBM44, LRRFIP1) 0 1 NA 0.818998975095376 332 0.192422094468089 2 2 0 -5.79650582951982 LTS-014 chr2 238896496 238970041 73546 * c(UBE2F-SCLY, UBE2F, SCLY) NA 0 NA 0.751626858718571 94 0.197833606588153 2 NA NA -5.79320868896924 LTS-014 chr2 238970042 238972924 2883 * c(UBE2F-SCLY, SCLY) NA 0 NA 0.499 1 NA NA NA NA NA LTS-014 chr2 238972925 239237953 265029 * c(UBE2F-SCLY, LOC151174, TRAF3IP1, ESPNL, KLHL30, SCLY, HES6, LOC643387, ILKAP, PER2) 0.0908942158118396 38 0.0349201181483339 0.520442345162969 754 0.205575074908046 1 1 0 -6.78036928977636 LTS-014 chr2 239237954 239308404 70451 * TRAF3IP1 0.143 1 NA 0.423928522505725 79 0.0828503223705864 1 1 0 -5.88961912855198 LTS-014 chr2 239308405 239757404 449000 * c(TWIST2, LINC01107, TRAF3IP1, ASB1) 0.177130564958662 6 0.0878331752054238 0.467752104599807 199 0.133119881488721 1 1 0 -7.20379360655735 LTS-014 chr2 239757405 239969865 212461 * c(TWIST2, FLJ43879, HDAC4) NA 0 NA 0.89 1 NA NA NA NA NA LTS-014 chr2 239969866 240029921 60056 * c(MIR4440, MIR4441, HDAC4) 0.323747179709617 3 0.247107938628716 0.898129607025691 158 0.174132538064276 2 1 1 -6.84785140319869 LTS-014 chr2 240029922 240083528 53607 * HDAC4 0.49 1 NA 0.926609821757696 60 0.195521665682892 2 2 0 -5.76643674256537 LTS-014 chr2 240083529 240507331 423803 * c(MIR4269, MIR2467, MGC16025, HDAC4) 0.468742722017437 10 0.0156190766550253 0.997678274683588 152 0.275055995123029 2 1 1 -8.9584016735433 LTS-014 chr2 240507332 240507702 371 * character(0) NA 0 NA 0.932227523176095 11 0.316635551900403 2 NA NA -5.76441686500382 LTS-014 chr2 240507703 240684515 176813 * character(0) NA 0 NA 0.453 1 NA NA NA NA NA LTS-014 chr2 240684516 240723930 39415 * LOC150935 0 1 NA 0.559122031364987 53 0.352928263555436 1 1 0 -5.76775203233626 LTS-014 chr2 240723931 242668050 1944120 * c(PP14571, BOK-AS1, MIR4786, STK25, CAPN10, MTERF4, OTOS, COPS9, OR6B3, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, KIF1A, PPP1R7, RNPEPL1, PRR21, AQP12B, BOK, C2orf54, ING5, FARP2) 0.0985291111839974 95 0.0515286523759111 0.529005575062502 3302 0.172965525501035 1 1 0 -6.95772062587618 LTS-014 chr2 242668051 242674803 6753 * c(D2HGDH, ING5) 0.071 1 NA 0.451469009051106 27 0.132252768862489 1 1 0 -5.76593507748495 LTS-014 chr2 242674804 242815774 140971 * c(NEU4, RTP5, PDCD1, GAL3ST2, D2HGDH) 0.12700213348899 16 0.0479471931747139 0.489220970358445 316 0.131073065705146 1 1 0 -6.92893659736811 LTS-014 chr2 242815775 243037218 221444 * LOC728323 NA 0 NA 0.532059463498504 40 0.139975263382408 1 NA NA -5.81087420762916 LTS-014 chr3 239351 1262474 1023124 * c(CHL1, CNTN6) 0.058 1 NA 0.861994448830121 233 0.171819506890382 2 2 0 -5.7755777745827 LTS-014 chr3 1262475 5259089 3996615 * c(EGOT, BHLHE40-AS1, CNTN4-AS2, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.0526482409851967 29 0.0299427203584286 0.849013039408256 1427 0.313529306120225 2 2 0 -6.77260381003536 LTS-014 chr3 5259090 10004728 4745639 * c(LMCD1-AS1, SRGAP3-AS3, ARPC4-TTLL3, MIR4790, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SSUH2, SETD5, RAD18, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, CAV3, EDEM1, SRGAP3) 0.0507701768977687 65 0.0261217839389626 0.91186033183767 2653 0.326621639125325 2 2 0 -6.77812427971676 LTS-014 chr3 10004729 10044457 39729 * c(EMC3, CIDEC) 0.0630806102257608 2 0.0268700576850888 0.780724976809754 68 0.274949791489666 2 2 0 -6.79079982793586 LTS-014 chr3 10044458 10076975 32518 * c(CIDECP, FANCD2, LOC401052, CIDEC) 0.044 1 NA 0.751512879321754 47 0.209481163835439 2 2 0 -5.77582103719895 LTS-014 chr3 10076976 10106532 29557 * FANCD2 0.316200986415358 9 0.194624638727988 0.793550654020494 111 0.351450979033194 3 2 1 -6.7786190131879 LTS-014 chr3 10106533 10119917 13385 * FANCD2 0.015 1 NA 0.814340896317111 31 0.314062078652154 2 2 0 -5.76493200769299 LTS-014 chr3 10119918 10369627 249710 * c(GHRLOS, FANCD2OS, FANCD2, IRAK2, ATP2B2, GHRL, BRK1, SEC13, VHL, LINC00852, TATDN2) 0.0503508243611725 21 0.0165435932067516 0.821833732773722 602 0.241123708765864 2 2 0 -6.79406951331081 LTS-014 chr3 10369628 14975743 4606116 * c(MIR885, MKRN2OS, FGD5P1, FGD5-AS1, SLC6A1-AS1, ATG7, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00606, LINC00620, HRH1, TPRXL, ATP2B2, CCDC174, PPARG, TMEM40, RAF1, RPL32, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, VGLL4, IQSEC1) 0.0515786600048383 82 0.0372310125930683 0.918560056624711 3465 0.266011448413676 2 2 0 -6.80121489905444 LTS-014 chr3 14975744 35726190 20750447 * c(PDCD6IP, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, LRRC3B, GALNT15, CCR4, KCNH8, TRIM71, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, FGD5, DAZL, STT3B, CLASP2, GPD1L, RFTN1, PLCL2, ANKRD28, CAPN7, FBXL2, CNOT10, SUSD5, HACL1, GLB1, RBMS3, NKIRAS1, LINC00692, DPH3, LOC339862, GADL1, ZNF860, NA NA NA NA NA NA NA NA NA LTS-014 COL6A4P1, VENTXP7, DYNC1LI1, CMTM6, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, TMPPE, MRPS25, THRB-AS1, LINC00693, BTD, MIR563, TGFBR2, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, UBP1, ZNF385D, COLQ, EOMES, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.0545766390404603 120 0.0328696080666287 0.830571978628581 7147 0.257573218381424 2 2 0 -7.3485413453742 LTS-014 NA NA NA NA LTS-014 chr3 35726191 42956034 7229844 * c(ACVR2B-AS1, CCDC13-AS1, CTDSPL, EIF1B, ARPP21, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, STAC, VIPR1, NA NA NA NA NA NA NA NA NA LTS-014 DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.0532685092784269 91 0.049532101306416 0.895962367676825 6356 0.281773789412547 2 2 0 -6.74682861771487 LTS-014 NA NA NA NA LTS-014 chr3 42956035 44958773 2002739 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, TMEM42, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, ZDHHC3, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, MIR564, TGM4, FAM198A, ZNF35, POMGNT2, ZNF502) 0.0456475639740222 10 0.0251486690613153 0.837983805755374 2048 0.299290906699515 2 2 0 -6.85112012678455 LTS-014 chr3 44958774 45017904 59131 * c(EXOSC7, ZDHHC3) 0.372 1 NA 0.868952230659622 116 0.173621522235892 2 2 0 -5.76468050259719 LTS-014 chr3 45017905 45590891 572987 * c(LARS2-AS1, EXOSC7, LARS2, TMEM158, CDCP1, CLEC3B) 0.0699713482596663 9 0.0224598407038974 0.886783618190044 382 0.230621004726906 2 2 0 -6.98683931264724 LTS-014 chr3 45590892 45837886 246995 * c(SACM1L, SLC6A20, LIMD1-AS1, LIMD1) 0.037 1 NA 0.818378414315709 463 0.199123200540477 2 2 0 -5.78542786246137 LTS-014 chr3 45837887 46623760 785874 * c(CXCR6, CCR9, CCR1, CCR3, CCR5, XCR1, LTF, LZTFL1, SLC6A20, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.0562281736240983 36 0.0203101350882161 0.852497158940768 1207 0.296273676457679 2 2 0 -6.74133736553451 LTS-014 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.082 1 NA NA NA NA NA LTS-014 chr3 46623907 47059126 435220 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.0492165266322335 15 0.0144410130234294 1.01292560486732 925 0.532984323075237 2 2 0 -6.84700675723877 LTS-014 chr3 47059127 56591176 9532050 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, NA NA NA NA NA NA NA NA NA LTS-014 RAD54L2, STAB1, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SEMA3B, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.049154094894011 104 0.0347027909615751 0.914213928040207 15318 0.231764411006524 2 2 0 -6.88246004714444 LTS-014 NA NA NA NA LTS-014 chr3 56591177 56591178 2 * character(0) 0.082 1 NA 0.126 1 NA NA NA NA NA LTS-014 chr3 56591179 56763001 171823 * c(FAM208A, CCDC66, ARHGEF3) 0.041027448186173 12 0.0264552223176973 0.75777269980838 357 0.218059229544321 2 2 0 -6.94685165874483 LTS-014 chr3 56763002 56763007 6 * ARHGEF3 NA 0 NA 0.926 1 NA NA NA NA NA LTS-014 chr3 56763008 58520801 1757794 * c(ARHGEF3-AS1, RPP14, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.0470374086040937 49 0.0274362898366379 0.855258949308298 2378 0.266731627240648 2 2 0 -6.79807581785846 LTS-014 chr3 58520802 66551335 8030534 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, ACOX2, CADPS, MAGI1, PSMD6) 0.0507362550287435 39 0.0216172383354665 0.936240039862941 2427 0.401144761127083 2 2 0 -6.86079866417837 LTS-014 chr3 66551336 69362706 2811371 * c(MIR3136, MIR4272, ARL6IP5, FAM19A4, FRMD4B, EOGT, FAM19A1, LMOD3, TMF1, KBTBD8, SUCLG2, UBA3) 0.0566215961116795 28 0.0218741893273821 0.808320935958788 1051 0.262797316740513 2 2 0 -6.91745564049438 LTS-014 chr3 69362707 69362722 16 * FRMD4B 0.058 1 NA 2.096 1 NA NA NA NA NA LTS-014 chr3 69362723 74315580 4952858 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.0475347266253614 20 0.020330104719227 0.899261893895722 1218 0.294576924588769 2 2 0 -6.82651680711798 LTS-014 chr3 74315581 74413676 98096 * CNTN3 0.073 1 NA 0.870315653197365 61 0.17333011556492 2 2 0 -5.7647718831235 LTS-014 chr3 74413677 75714337 1300661 * c(MIR1324, CNTN3, FAM86DP) 0.242159850298984 8 0.135041726355756 0.954960859354926 64 0.299780950121177 3 2 1 -7.71396459574658 LTS-014 chr3 75714338 75714367 30 * character(0) NA 0 NA 0.479 1 NA NA NA NA NA LTS-014 chr3 75714368 75714663 296 * character(0) 0.088 1 NA 0.617036662561703 3 0.595478239176994 1 1 0 -5.76443683273557 LTS-014 chr3 75714664 75714674 11 * character(0) 0.06 1 NA 1.347 1 NA NA NA NA NA LTS-014 chr3 75714675 75716188 1514 * character(0) 0.097017508241434 9 0.048687210275846 0.615195568377817 31 0.462069321708893 1 1 0 -6.73440360573484 LTS-014 chr3 75716189 75779104 62916 * ZNF717 NA 0 NA 0.337437808767937 6 0.131934327097487 1 NA NA -6.0508436622526 LTS-014 chr3 75779105 75779134 30 * ZNF717 0.444 1 NA 1.294 1 NA NA NA NA NA LTS-014 chr3 75779135 75779349 215 * ZNF717 0.426822564500947 10 0.0506185078141714 1.01892239798658 14 0.423855900248922 9 5 4 -6.73445573472183 LTS-014 chr3 75779350 75779360 11 * ZNF717 0.466 1 NA 1.238 1 NA NA NA NA NA LTS-014 chr3 75779361 75779566 206 * ZNF717 0.208432288025008 9 0.207149570225102 1.05214973790768 13 0.629313840826984 10 8 2 -6.73360666861004 LTS-014 chr3 75779567 75779649 83 * ZNF717 0.424 1 NA 0.573431083157656 3 0.18914544668059 1 1 0 -5.76444445677604 LTS-014 chr3 75779650 75781186 1537 * ZNF717 0.469610233354058 9 0.0278423139204421 0.669480487903785 13 0.231842425488542 2 1 1 -7.63773774312257 LTS-014 chr3 75781187 75781200 14 * ZNF717 0.017 1 NA 1.863 1 NA NA NA NA NA LTS-014 chr3 75781201 75785691 4491 * ZNF717 0.227564742904666 32 0.157756163291491 0.893285603905685 64 0.437028423567567 5 4 1 -6.74717563511803 LTS-014 chr3 75785692 75785696 5 * ZNF717 NA 0 NA 0.41 1 NA NA NA NA NA LTS-014 chr3 75785697 75787186 1490 * ZNF717 0.353098016868969 45 0.158518551952544 0.626609866662312 86 0.319427222721538 3 2 1 -6.73884794233678 LTS-014 chr3 75787187 75787199 13 * ZNF717 0.053 1 NA 1.217 1 NA NA NA NA NA LTS-014 chr3 75787200 75787620 421 * ZNF717 0.0466698746513161 10 0.0115571045970289 0.868787063873512 14 0.393453545298161 2 2 0 -7.03328367235936 LTS-014 chr3 75787621 75787726 106 * ZNF717 0.47 1 NA 0.42879257874239 5 0.17061008176541 1 1 0 -5.76444823856478 LTS-014 chr3 75787727 75790878 3152 * ZNF717 0.3197128544709 33 0.192408788898674 0.642968757489967 69 0.324570874146797 3 2 1 -6.75212283041082 LTS-014 chr3 75790879 75986813 195935 * c(ZNF717, ROBO2) 0.381410517420732 6 0.1599917706217 0.891719902186005 16 0.315924615216985 2 1 1 -6.79421317834077 LTS-014 chr3 75986814 77089395 1102582 * ROBO2 0.012 1 NA 0.809803242482762 11 0.293287262222242 2 2 0 -5.82031066452622 LTS-014 chr3 77089396 79557072 2467677 * c(ROBO1, ROBO2) 0.043822870240798 3 0.0370720020140986 0.939892261444285 414 0.28880372279786 2 2 0 -6.85794466793053 LTS-014 chr3 79557073 79582198 25126 * ROBO1 NA 0 NA 0.826 1 NA NA NA NA NA LTS-014 chr3 79582199 89530057 9947859 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.0538112965052892 11 0.0264454842338656 0.821988899176325 1139 0.230076747000967 2 2 0 -7.2510797530691 LTS-014 chr3 89530058 90283666 753609 * EPHA3 NA 0 NA 0.866262006612587 49 0.165277487756753 2 NA NA -5.76992279596069 LTS-014 chr3 93591838 93593119 1282 * PROS1 0.061 1 NA 0.785534404872833 25 0.50575376749297 2 2 0 -5.76445062394652 LTS-014 chr3 93593120 97664725 4071606 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, LINC00879, EPHA6, STX19, PROS1, NSUN3, ARL6, MINA) 0.212091298018546 9 0.171771650745983 0.82086423525789 847 0.225027702235273 2 2 0 -7.43752745287024 LTS-014 chr3 97664726 97806944 142219 * c(GABRR3, OR5AC2, MINA) 0.039 1 NA 0.796621975289286 123 0.194413651439879 2 2 0 -5.78783665445926 LTS-014 chr3 97806945 99516925 1709981 * c(MIR548G, ST3GAL6-AS1, ST3GAL6, COL8A1, DCBLD2, CPOX, OR5K1, OR5H1, GPR15, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.0477269984097506 10 0.0321152438709235 0.803002018838355 684 0.343429700410816 2 2 0 -6.84013757521559 LTS-014 chr3 99516926 99860401 343476 * c(MIR548G, MIR3921, FILIP1L, CMSS1) 0.052 1 NA 0.825583716342494 143 0.18604776432323 2 2 0 -5.79051049891939 LTS-014 chr3 99860402 100174722 314321 * c(LNP1, TBC1D23, NIT2, TMEM30CP, CMSS1, TOMM70) 0.235514278237007 9 0.145186470137927 0.795044775760504 411 0.287471048047746 3 2 1 -7.5285239742684 LTS-014 chr3 100174723 100277476 102754 * c(LNP1, TMEM45A) 0.035 1 NA 0.869473838739933 33 0.420431700034547 2 2 0 -5.76448404136025 LTS-014 chr3 100277477 114462491 14185015 * c(ZBTB11-AS1, ZBTB20-AS1, LINC00882, PVRL3-AS1, MIR4796, MIR4446, CFAP44-AS1, CD96, TFG, HHLA2, ZPLD1, CD200R1, FAM172BP, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, DRD3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, ZBTB20, ZBTB11, MORC1, LINC00636, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, DUBR, TMPRSS7, CD200R1L, FLJ22763, LINC01205, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, NA NA NA NA NA NA NA NA NA LTS-014 SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, CFAP44, BBX, PCNP, SENP7, CCDC191, KIAA1524, RPL24, NFKBIZ, ATG3, LINC00488, MIR548A3, MIR567, MIR568, ZNF80, ZBED2, CEP97, C3orf52, QTRT2, NAA50, RETNLB, CCDC54, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3) 0.0582567469723971 161 0.0356695648577728 0.825849024697464 7258 0.324437239551414 2 2 0 -7.0712052835879 LTS-014 NA NA NA NA LTS-014 chr3 114462492 114832231 369740 * ZBTB20 NA 0 NA 1.488 1 NA NA NA NA NA LTS-014 chr3 114832232 115805448 973217 * c(GAP43, ZBTB20, LSAMP) NA 0 NA 1.37366685092802 109 0.357612714707815 3 NA NA -5.78977072571963 LTS-014 chr3 115805449 116163696 358248 * LSAMP NA 0 NA 0.96 1 NA NA NA NA NA LTS-014 chr3 116163697 122599330 6435634 * c(IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, FAM162A, GOLGB1, TUSC7, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, LSAMP, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.0482054956263574 74 0.0270273799495654 0.843453822565472 4858 0.276502645590211 2 2 0 -6.87161868077291 LTS-014 chr3 122599331 124377461 1778131 * c(LOC100129550, MYLK-AS1, MIR5002, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, ROPN1, CCDC14, DIRC2, KALRN) 0.0506391098630193 40 0.0258779680571955 0.935962578338816 1577 0.293304425626534 2 2 0 -6.79349575719562 LTS-014 chr3 124377462 124378154 693 * KALRN NA 0 NA 0.83 1 NA NA NA NA NA LTS-014 chr3 124378155 125692702 1314548 * c(FAM86JP, MIR548I1, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.0564727567138249 20 0.0189181060585383 0.841972592458091 1251 0.250781872314119 2 2 0 -6.76362483912374 LTS-014 chr3 125692703 125694368 1666 * ROPN1B NA 0 NA 1.039 1 NA NA NA NA NA LTS-014 chr3 125694369 127390471 1696103 * c(ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, TXNRD3, TPRA1, UROC1, ROPN1B, C3orf22, CHST13, NUP210P1, KLF15, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, TXNRD3NB, ZXDC, CHCHD6) 0.0403548814580742 23 0.0297655529478706 0.95841070033424 1434 0.353233029420834 2 2 0 -6.93134377370603 LTS-014 chr3 127390472 127391106 635 * PODXL2 NA 0 NA 0.766 1 NA NA NA NA NA LTS-014 chr3 127391107 130799466 3408360 * c(TMCC1-AS1, ISY1-RAB43, MGLL, COL6A6, RPL32P3, H1FOO, DNAJB8, KBTBD12, COPG1, TMCC1, PLXND1, LINC01565, COL6A5, GATA2, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, SEC61A1, PIK3R4, RAB43, H1FX-AS1, PODXL2, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, COL6A4P2, LOC653712, SNORA7B, TRH, FAM86HP, CNBP, RAB7A, EFCC1, NEK11, ABTB1, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.0548222571159204 51 0.0323452454305232 0.89060732162722 3407 0.245689989999142 2 2 0 -6.73608995859264 LTS-014 chr3 130799467 130828643 29177 * NEK11 NA 0 NA 2.009 1 NA NA NA NA NA LTS-014 chr3 130828644 132076746 1248103 * c(MIR5704, MRPL3, CPNE4, NUDT16, NUDT16P1, LOC339874, ACPP, SNORA58, NEK11) 0.0344552357496188 15 0.0362559683099933 1.62417061924264 531 0.480950432826445 4 4 0 -6.7480547995981 LTS-014 chr3 132076747 132076920 174 * ACPP 0 1 NA 2.95 1 NA NA NA NA NA LTS-014 chr3 132076921 132420429 343509 * c(NPHP3-ACAD11, DNAJC13, NPHP3, ACKR4, ACPP, UBA5, ACAD11) 0.0206083532037689 7 0.0133470167881387 1.6027068187406 685 0.37361889146233 5 5 0 -6.85483505636928 LTS-014 chr3 132420430 132423053 2624 * NPHP3 NA 0 NA 0.835 1 NA NA NA NA NA LTS-014 chr3 132423054 133667902 1244849 * c(TOPBP1, NPHP3, NPHP3-AS1, RAB6B, CDV3, SRPRB, SLCO2A1, TMEM108, TF, C3orf36, BFSP2) 0.044065653545912 16 0.0296613525202971 0.914757740440457 887 0.263256003267092 2 2 0 -6.82836995345136 LTS-014 chr3 133667903 133669943 2041 * SLCO2A1 NA 0 NA 1.694 1 NA NA NA NA NA LTS-014 chr3 133669944 134514255 844312 * c(MIR4788, EPHB1, ANAPC13, KY, AMOTL2, RYK, SLCO2A1, CEP63) 0.0237679789853019 15 0.0110030298857481 1.70220407344396 448 0.714813352739409 5 5 0 -6.7690229752501 LTS-014 chr3 134514256 134514362 107 * EPHB1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-014 chr3 134514363 134979279 464917 * EPHB1 0.0572609414521317 3 0.00781024967590665 0.927702873358102 138 0.272735765220445 2 2 0 -6.79000519389505 LTS-014 chr3 134979280 134979283 4 * EPHB1 NA 0 NA 1.279 1 NA NA NA NA NA LTS-014 chr3 134979284 137752455 2773172 * c(STAG1, EPHB1, NCK1, PCCB, CLDN18, IL20RB, MSL2, PPP2R3A, SLC35G2, SOX14) 0.0249213518269234 16 0.0147082743152735 1.57996348336118 920 0.443486378109541 4 4 0 -6.80679739147244 LTS-014 chr3 137752456 137787258 34803 * c(DZIP1L, CLDN18) NA 0 NA 0.959799147557306 39 0.15721308935832 2 NA NA -5.77040503981567 LTS-014 chr3 137787259 137787775 517 * DZIP1L NA 0 NA 1.934 1 NA NA NA NA NA LTS-014 chr3 137787776 138423348 635573 * c(DZIP1L, MRAS, ARMC8, NME9, A4GNT, DBR1, PIK3CB, FAIM, CEP70, ESYT3) 0.0246335154664312 18 0.0229172994565041 1.64763095300106 1030 0.549140945112582 4 4 0 -6.75648230374957 LTS-014 chr3 138423349 141011308 2587960 * c(PISRT1, TRIM42, NMNAT3, PRR23B, PRR23C, FOXL2NB, PIK3CB, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, SPSB4, PXYLP1, COPB2) 0.0465668452109425 12 0.0266303256161888 0.920653382851738 1150 0.254830559164879 2 2 0 -6.83652647279867 LTS-014 chr3 141011309 142607955 1596647 * c(GRK7, ZBTB38, GK5, PCOLCE2, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, TRPC1, PXYLP1, RNF7) 0.0328940553006061 13 0.0292302968922701 0.806226690812112 1751 0.243091795312038 2 2 0 -7.18820522727909 LTS-014 chr3 142607956 142668022 60067 * c(LOC100507389, PCOLCE2) 0.175 1 NA 0.652572641585654 5 0.291613271302936 1 1 0 -5.7991805779609 LTS-014 chr3 142668023 145824478 3156456 * c(LOC100289361, SLC9A9-AS1, C3orf58, U2SURP, SLC9A9, PAQR9, PLOD2, CHST2) 0.06756748186881 25 0.0367070383804887 0.815921416358572 791 0.292212385869265 2 2 0 -6.93437126729967 LTS-014 chr3 145824479 145910430 85952 * c(PLOD2, PLSCR4) 0 1 NA 0.783319690284493 43 0.181884179982806 2 2 0 -5.78636931846425 LTS-014 chr3 145910431 147134518 1224088 * c(PLSCR5, PLSCR1, PLSCR2, PLSCR4, ZIC1, ZIC4) 0.0445745881272204 7 0.0230651251893416 0.858592420426233 408 0.228048638040942 2 2 0 -6.86479618707467 LTS-014 chr3 148458752 183753930 35295179 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, ABCC5-AS1, KCNAB1-AS2, KCNAB1-AS1, LINC01014, LOC101243545, KCNMB2, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, DNAJC19, OTOL1, ERICH6, CP, CPA3, CPB1, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, NA NA NA NA NA NA NA NA NA LTS-014 ECT2, HTR3D, RPL22L1, AADACP1, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, NAALADL2, WWTR1, TIPARP, ARHGEF26, GHSR, GPR160, LAMP3, KCNMB3, SERP1, GOLIM4, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, CCDC39, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, SOX2-OT, IL12A, KPNA4, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, CLDN11, P2RY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, P2RY13, GPR87, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, MYNN, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, GNB4, ZMAT3, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SCARNA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MIR551B, MIR569, TERC, SEC62, TM4SF4, LINC00886, CLRN1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, HPS3, ACTRT3, GFM1, ACTL6A, B3GALNT1, TNFSF10, GMPS, USP13, KLHL6, SLC33A1, EGFEM1P, TSC22D2, P2RY14) 0.0285106188945969 267 0.0154665906458393 1.54919232387458 14945 0.51226921492627 4 4 0 -7.14146513087374 LTS-014 NA NA NA NA LTS-014 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.826 1 NA NA NA NA NA LTS-014 chr3 183754123 186370333 2616211 * c(MIR1224, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, CRYGS, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, VPS8, LOC253573, FETUB, HTR3E, C3orf70, EHHADH-AS1, NMRAL1P1, DNAJB11, POLR2H, TBCCD1, ABCF3, PSMD2, SENP2, MAGEF1, TRA2B, IGF2BP2-AS1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.0287450883498853 74 0.0126434896461844 1.68176763746438 3851 0.476010022805227 4 4 0 -6.73417245351023 LTS-014 chr3 186370334 186387934 17601 * c(FETUB, HRG) NA 0 NA 1.85281992170152 23 0.321765577643914 4 NA NA -5.76554392032457 LTS-014 chr3 186387935 186389353 1419 * HRG NA 0 NA 2.042 1 NA NA NA NA NA LTS-014 chr3 186389354 186389559 206 * HRG 0.213 1 NA 2.70344503857943 5 1.14695544813214 7 7 0 -5.76441037876025 LTS-014 chr3 186389560 186796130 406571 * c(ADIPOQ-AS1, EIF4A2, HRG, KNG1, RFC4, SNORA63, SNORD2, SNORA4, ST6GAL1, SNORA81, ADIPOQ) 0.201185330833221 25 0.0634887654103727 2.01646784573172 463 0.596986049690213 5 4 1 -6.75838132709967 LTS-014 chr3 186796131 186796347 217 * ST6GAL1 NA 0 NA 2.07289587751096 6 0.238230700512479 5 NA NA -5.76441022370704 LTS-014 chr3 186796348 186918213 121866 * c(RPL39L, RTP1) 0.03 1 NA 1.58017510401495 37 0.311884702362215 4 4 0 -5.76657950876895 LTS-014 chr3 186918214 191114266 4196053 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, CLDN16, TMEM207, RTP1, CCDC50, UTS2B, TPRG1, LPP-AS2, RTP2, OSTN, IL1RAP, FLJ42393, LPP, P3H2, MASP1, BCL6, RTP4, GMNC, SST, TP63, CLDN1) 0.0258916353333504 89 0.0164564147155786 1.6554022794109 2083 0.935669380946397 4 4 0 -6.75669284425227 LTS-014 chr3 191114267 191116133 1867 * CCDC50 0.034 1 NA 1.63965694666328 41 0.559320747675686 4 4 0 -5.76441114228824 LTS-014 chr3 191116134 191179328 63195 * c(CCDC50, PYDC2) NA 0 NA 1.66427640698131 15 0.597468524773681 4 NA NA -5.76441050855111 LTS-014 chr3 191859873 193081998 1222126 * c(MB21D2, FGF12, ATP13A5, HRASLS, MGC2889) 0.00732690029979107 14 0.00736639235065145 4.2359599301136 346 1.53940462692127 15 15 0 -6.77749626629783 LTS-014 chr3 193081999 194947585 1865587 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, GP5, HES1, ATP13A5, LINC00884, OPA1, LSG1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.0155723390492644 31 0.0130760389911825 2.70074416537843 1210 0.779101189096961 7 7 0 -6.74631240962122 LTS-014 chr3 194947586 194968486 20901 * XXYLT1 NA 0 NA 1.784 1 NA NA NA NA NA LTS-014 chr3 194968487 195295661 327175 * c(MIR5692C1, XXYLT1, ACAP2, APOD, PPP1R2) 0.0146507282069528 6 0.0123071794764953 2.14928637366881 326 0.663741509724945 7 7 0 -6.79173868710645 LTS-014 chr3 195295662 195345056 49395 * APOD 0.168 1 NA 2.57552721645063 27 0.562185114143111 6 6 0 -5.76463447550727 LTS-014 chr3 195345057 195452770 107714 * c(MUC20, MIR570, SDHAP2) 0.172830068979283 18 0.17867227273909 2.80186637231253 116 1.26107692379218 6 5 1 -6.73469119826894 LTS-014 chr3 195452771 195452799 29 * MUC20 0.143 1 NA 2.78507998951592 2 1.42764859121564 7 7 0 -5.7644101384073 LTS-014 chr3 195452800 195468060 15261 * MUC20 0.0158319909853502 9 0.00716085035298028 3.11727863289465 51 1.75795851274967 8 8 0 -6.74033092577467 LTS-014 chr3 195468061 195473757 5697 * MUC4 0.35 1 NA 2.36272592062341 9 1.07434209842324 6 6 0 -5.76441425970099 LTS-014 chr3 195473758 195686891 213134 * c(TNK2, SDHAP1, MUC4) 0.137553628954267 10 0.16236447339927 2.45374063280205 368 0.687914820707769 7 6 1 -6.74593453415447 LTS-014 chr3 195686892 195690308 3417 * SDHAP1 0.005 1 NA 3.23234856335175 8 1.38082211536668 8 8 0 -5.76441013765837 LTS-014 chr3 195690309 195964241 273933 * c(ZDHHC19, SLC51A, SDHAP1, LINC00885, TFRC) 0.00705087835015332 5 0.0114236596587959 2.39191603780163 343 0.787296640842559 12 12 0 -6.90334832074662 LTS-014 chr3 195964242 195964298 57 * character(0) 0.024 1 NA 0.183 1 NA NA NA NA NA LTS-014 chr3 195964299 196242264 277966 * c(TM4SF19-TCTEX1D2, TM4SF19, RNF168, TCTEX1D2, SMCO1, UBXN7, PCYT1A) 0.0235656106465597 7 0.00512231346542705 2.14036513529216 570 0.503153058441378 5 5 0 -6.73403959472964 LTS-014 chr3 196242265 196281012 38748 * character(0) NA 0 NA 2.879 1 NA NA NA NA NA LTS-014 chr3 196281013 196669123 388111 * c(FBXO45, SENP5, NCBP2, WDR53, NRROS, PAK2, PIGX, CEP19) 0.016765990790867 20 0.00902904669444822 2.83522776968636 672 0.737775949751003 7 7 0 -6.73390423510274 LTS-014 chr3 196669124 196728706 59583 * c(NCBP2-AS2, NCBP2, MELTF, PIGZ) 0.0096871030711979 3 0.00529150262212918 3.33150150372399 73 0.773356333306219 12 12 0 -6.74559732247253 LTS-014 chr3 196728707 196729588 882 * MELTF 0 1 NA 3.47471546437193 21 0.93575856420136 9 9 0 -5.76441129360458 LTS-014 chr3 196729589 197717569 987981 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, DLG1, LOC220729, MELTF, RPL35A, BDH1, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.115218182550993 9 0.038593321241433 3.40054848615267 1015 0.764928170718824 9 8 1 -6.75350729199491 LTS-014 chr3 197717570 197770512 52943 * LMLN NA 0 NA 3.87054548247974 127 0.811288063257929 10 NA NA -5.76448210488548 LTS-014 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.291 1 NA 0.534742970720255 13 0.101075879087611 1 1 0 -5.76766011052967 LTS-014 chr4 60304 438327 378024 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.402032392201432 8 0.0810096995956128 0.765385383958209 333 0.192133313781034 2 1 1 -6.93934810889926 LTS-014 chr4 438328 466445 28118 * c(ZNF721, ABCA11P) NA 0 NA 0.998 1 NA NA NA NA NA LTS-014 chr4 466446 3227419 2760974 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, NA NA NA NA NA NA NA NA NA LTS-014 CTBP1-AS2, TMEM129) 0.44344622833878 108 0.0851463322083973 0.897024252618428 4898 0.222505101369594 2 1 1 -6.75181069605414 LTS-014 NA NA NA NA LTS-014 chr4 3227420 3227457 38 * HTT NA 0 NA 0.965 1 NA NA NA NA NA LTS-014 chr4 3227458 6710966 3483509 * c(LOC100133461, STX18-AS1, MIR378D1, LINC01587, MRFAP1L1, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, ZBTB49, EVC, MAN2B2, NSG1, LOC285484, DOK7, LINC00955, HTT, HGFAC, MSANTD1, FAM86EP, LRPAP1, MSX1, STX18, CYTL1, PPP2R2C, STK32B, LYAR, RGS12, S100P, WFS1, TMEM128, MRFAP1, LOC93622) 0.433032435927141 115 0.0756414148867649 0.958323627669753 2569 0.267902219982804 2 1 1 -6.92606211949916 LTS-014 chr4 6710967 7043345 332379 * c(LOC100129931, MRFAP1L1, CCDC96, BLOC1S4, TBC1D14, KIAA0232) 0.468031174908705 6 0.0203248616231452 0.816995945452905 396 0.19611782275653 2 1 1 -8.18129511113845 LTS-014 chr4 7043346 9783376 2740031 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR4798, TRMT44, DRD5, CCDC96, GPR78, HMX1, USP17L6P, USP17L9P, SH3TC1, SORCS2, AFAP1, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, CPZ, TADA2B, HTRA3) 0.441222673152907 82 0.0934509655217145 0.973177333699893 1554 0.291452729021462 2 1 1 -6.9187878362509 LTS-014 chr4 9783377 30733512 20950136 * c(MIR4275, MIR3138, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, CLNK, CPEB2, PACRGL, LINC01085, DHX15, ADGRA3, DRD5, TAPT1, TAPT1-AS1, SEL1L3, LCORL, BOD1L1, FBXL5, FAM184B, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, CPEB2-AS1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, SLC2A9, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, NCAPG, NA NA NA NA NA NA NA NA NA LTS-014 CLRN2, SOD3, BST1, MIR572, MIR573, MED28, KCNIP4, FGFBP2, ZNF518B, PROM1, CCKAR, LDB2, CCDC149, SLIT2, RAB28, CD38, WDR1, HS3ST1, FGFBP1) 0.428639862468776 151 0.0962547420350728 0.877039220000971 5960 0.290327868150319 2 1 1 -6.73927487155283 LTS-014 NA NA NA NA LTS-014 chr4 30733513 36067859 5334347 * c(ARAP2, PCDH7) NA 0 NA 0.921025836444896 53 0.26307523743508 2 NA NA -5.8488890690124 LTS-014 chr4 36067860 36067890 31 * ARAP2 NA 0 NA 0.594 1 NA NA NA NA NA LTS-014 chr4 36067891 36163128 95238 * ARAP2 0.161 1 NA 0.412070006770768 137 0.120810595028703 1 1 0 -5.87865885494558 LTS-014 chr4 36163129 39978005 3814877 * c(MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, DTHD1, LOC401127, KLHL5, KLF3, PGM2, C4orf19, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, TMEM156, TLR10, FAM114A1) 0.0936070500581734 49 0.0528523002929721 0.459447245868826 2436 0.159904097271857 1 1 0 -7.08182772452097 LTS-014 chr4 39978006 40045340 67335 * c(PDS5A, LOC344967) 0.104 1 NA 0.552233499293505 13 0.200987147184424 1 1 0 -5.77885218068093 LTS-014 chr4 40045341 40818271 772931 * c(MIR4802, APBB2, LOC344967, RHOH, RBM47, CHRNA9, N4BP2, NSUN7) 0.0543186640462372 3 0.00608276253029822 0.443054681943796 641 0.11977015934131 2 2 0 -12.1725995654291 LTS-014 chr4 40818272 41945883 1127612 * c(UCHL1-AS1, LIMCH1, APBB2, TMEM33, UCHL1, PHOX2B) 0.0585801163010337 5 0.0371254629600763 0.529873769448126 520 0.164349552096122 1 1 0 -7.52789361227704 LTS-014 chr4 41945884 41946718 835 * TMEM33 NA 0 NA 0.255 1 NA NA NA NA NA LTS-014 chr4 41946719 47584046 5637328 * c(ATP8A1, SLC30A9, GNPDA2, SHISA3, COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, KCTD8, BEND4, GRXCR1, COMMD8, TMEM33, ATP10D, GUF1) 0.0921912323890204 57 0.0634453467960826 0.47048513117205 2193 0.187452732473255 1 1 0 -6.8896543850424 LTS-014 chr4 47584047 47589243 5197 * ATP10D NA 0 NA 0.492195147766565 7 0.0477204159164408 1 NA NA -5.76444740044236 LTS-014 chr4 47589244 47593055 3812 * ATP10D NA 0 NA 1.941 1 NA NA NA NA NA LTS-014 chr4 47593056 47597654 4599 * c(CORIN, ATP10D) 0.224 1 NA 1.77851128696619 85 0.291674173572862 4 4 0 -5.76454508339917 LTS-014 chr4 47597655 47626068 28414 * CORIN NA 0 NA 2.12906750258555 31 0.35218846982769 5 NA NA -5.76455964509751 LTS-014 chr4 47626069 47628374 2306 * CORIN NA 0 NA 0.509 1 NA NA NA NA NA LTS-014 chr4 47628375 47679987 51613 * CORIN NA 0 NA 0.456659341148301 52 0.111179301599139 1 NA NA -5.77656336560885 LTS-014 chr4 47679988 48115237 435250 * c(CORIN, CNGA1, NFXL1, NIPAL1, TXK) 0.232172055121633 10 0.0301568123868113 1.85238648960206 436 0.379054604486659 5 4 1 -6.95973055425394 LTS-014 chr4 48115238 49019232 903995 * c(OCIAD2, SLC10A4, FRYL, ZAR1, OCIAD1, SLAIN2, TEC, TXK, CWH43) 0.251862523647132 17 0.119549552856693 1.46169058704553 884 0.390914898623013 4 3 1 -6.80072470800126 LTS-014 chr4 49019233 49064107 44875 * CWH43 NA 0 NA 1.41937648695912 40 0.260861585264421 3 NA NA -5.76897212229655 LTS-014 chr4 52709193 52888499 179307 * c(DCUN1D4, LRRC66, SGCB) 0.396 1 NA 0.86611119674111 245 0.203940356115358 2 2 0 -5.76528877454489 LTS-014 chr4 52888500 89397091 36508592 * c(FAM47E, FTLP10, EPHA5-AS1, ERVMER34-1, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, SRD5A3-AS1, THEGL, LOC100506746, MIR4450, MIR4451, MIR4449, FAM47E-STBD1, MIR5705, LNX1-AS1, LNX1-AS2, ENAM, CDS1, CXCL13, CENPC, PAICS, UGT2B11, HPSE, NMU, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, SPATA18, TMPRSS11B, ARL9, AASDH, PDCL2, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, LINC01618, SCFD2, NA NA NA NA NA NA NA NA NA LTS-014 THAP6, C4orf26, PPM1K, RASGEF1B, DCK, RASSF6, GSX2, AFM, AFP, DMP1, DSPP, EPHA5, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, ADGRL3, CNOT6L, TECRL, C4orf22, IGFBP7-AS1, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, STAP1, GC, CHIC2, SMR3A, GK2, NAAA, COQ2, SULT1B1, GNRHR, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, TMPRSS11A, SOWAHB, SLC10A6, HSD17B13, IGFBP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 JCHAIN, CXCL8, CXCL10, AREG, KDR, KIT, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, PRR27, AMTN, RPL21P44, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PDGFRA, PF4, PF4V1, PKD2, NUDT9, NUP54, POLR2B, UGT2B28, PPEF2, PPAT, PPBP, ODAM, HERC6, UBA6-AS1, LOC550113, SDAD1, UBA6, BMP2K, SEPT11, EXOC1, TMEM165, PRKG2, MAPK10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MEPE, PRDM8, UTP3, DANCR, UGT2A2, KIAA1211, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, REST, CXCL6, CXCL11, CXCL5, LOC644145, SGCB, TMPRSS11GP, USP46, MRPL1, BMP3, RASL11B, SPINK2, SPP1, SRP72, SNORA26, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, UGT2B17, SRD5A3, THAP9, SCD5, FRAS1, FIP1L1, ARHGAP24, SPARCL1, FAM175A, NOA1, HOPX, LNX1, NAA11, GPAT3, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MOB1B, TMPRSS11D, ABCG2, SCARB2, ADAMTS3, CLOCK, CEP135, G3BP2, HNRNPDL) 0.448179775549977 350 0.070101880365521 0.852418789970097 16977 0.228151393508232 2 1 1 -7.22203444321472 LTS-014 NA NA NA NA LTS-014 chr4 89397092 89408398 11307 * HERC5 0 1 NA 0.916607319043992 17 0.38237178743146 2 2 0 -5.76447795885139 LTS-014 chr4 89408399 144824235 55415837 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, STPG2-AS1, FAM13A, SPRY1, PGRMC2, SEC24B, CLGN, PDLIM5, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, MGAT4D, SPATA5, BBS12, FREM3, TIGD2, NA NA NA NA NA NA NA NA NA LTS-014 SGMS2, SYNPO2, EGF, EIF4E, ELF2, ENPEP, FABP2, FGF2, HSPA4L, MMRN1, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, NAP1L5, PPA2, DAPP1, DKK2, INTU, HPGDS, ZNF330, LINC01091, RPL34-AS1, FAM13A-AS1, GPRIN3, STPG2, ANK2, GRID2, GYPE, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, CCSER1, LINC01061, C4orf3, MAD2L1, MANBA, MGST2, GUSBP5, MIR302B, MTTP, NDUFC1, ATOH1, NFKB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CISD2, LEF1, HERC5, LARP7, PDHA2, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, MAML3, BDH2, SMARCAD1, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, SNCA-AS1, TNRC18P1, CEP170P1, LOC645513, NDST4, ETNPPL, BMPR1B, SNCA, SNORA24, TACR3, MIR577, TRPC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CETN4P, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, UNC5C, LAMTOR3, PDE5A, INPP4B, CCNA2, HERC3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.424472001664491 385 0.100950451419372 0.856404674255694 18973 0.300876667377519 2 1 1 -7.04471242646126 LTS-014 NA NA NA NA LTS-014 chr4 144824236 144922436 98201 * c(GYPA, GYPB, GYPE) 0.256 1 NA 0.8354267730643 35 0.257451625545069 2 2 0 -5.76704957265317 LTS-014 chr4 144922437 146062787 1140351 * c(ANAPC10, GYPA, GYPB, OTUD4, ABCE1, HHIP, HHIP-AS1) 0.250728217320949 9 0.214573414010217 0.845461898397225 591 0.338357575973265 2 1 1 -7.1470369688443 LTS-014 chr4 146062788 146086269 23482 * OTUD4 0.5 1 NA 0.838813284549594 79 0.191377369693074 2 2 0 -5.765389304014 LTS-014 chr4 146086270 174189342 28103073 * c(MIR3140, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, MIR4799, MIR3688-2, MAB21L2, LSM6, ANXA10, KLHL2, CLCN3, CPE, CTSO, ZNF827, SH3D19, FAM218A, C4orf45, DCLK2, TRIM60, MMAA, RBM46, EDNRA, C4orf46, TIGD4, TMEM154, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, KIAA0922, TRIM2, ANP32C, GK3P, ARFIP1, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, LOC340017, PRSS48, TRIM61, SMAD1, NR3C2, NA NA NA NA NA NA NA NA NA LTS-014 GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, HPF1, MARCH1, FBXW7, TMEM144, TMA16, DDX60, TMEM184C, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, RPS3A, MSMO1, SFRP2, C4orf51, MIR578, TDO2, TLL1, TLR2, FAM160A1, ARHGAP10, MAP9, TTC29, MND1, SLC10A7, TKTL2, CBR4, FHDC1, SNORD73A, PRMT9, DDX60L, LRAT, NAF1, RAPGEF2, MFAP3L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 LRBA) 0.424848254469737 192 0.107583827760668 0.865988488159543 9552 0.296437030713569 2 1 1 -6.8017035811302 LTS-014 NA NA NA NA LTS-014 chr4 174189343 174213240 23898 * GALNT7 NA 0 NA 0.525 1 NA NA NA NA NA LTS-014 chr4 174213241 176555914 2342674 * c(MIR4276, ADAM29, SCRG1, FBXO8, GPM6A, HMGB2, HPGD, GALNT7, HAND2-AS1, GLRA3, CEP44, SAP30, HAND2) 0.396731192819718 13 0.132159334682003 0.74018335038677 860 0.424380355908512 2 1 1 -7.00851868646559 LTS-014 chr4 176555915 176555995 81 * GPM6A NA 0 NA 0.858 1 NA NA NA NA NA LTS-014 chr4 176555996 184239396 7683401 * c(MIR1305, WDR17, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, GPM6A, LINC01098, FAM92A1P2, CLDN22, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, WWC2, LOC90768) 0.398737979798737 34 0.125038118964962 0.825927445003436 1325 0.216660996758504 2 1 1 -7.17619336945563 LTS-014 chr4 184239397 186539762 2300366 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.407411387702086 32 0.0938951886499671 0.739916088084051 1888 0.209095783026939 2 1 1 -7.62189438774466 LTS-014 chr4 186539763 190884192 4344430 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.376334145034515 31 0.110574550339559 0.804606941599965 1260 0.24807802612567 2 1 1 -7.22432768907247 LTS-014 chr4 190884193 190884291 99 * FRG1 NA 0 NA 0.68 1 NA NA NA NA NA LTS-014 chr4 190884292 190981499 97208 * FRG1 0.396 1 NA 1.27460401140789 37 0.567100914694596 3 3 0 -5.76441013950419 LTS-014 chr4 190981500 190981567 68 * character(0) NA 0 NA 1.573 1 NA NA NA NA NA LTS-014 chr5 140347 163266 22920 * PLEKHG4B 0.101 1 NA 0.477623712462592 69 0.122241267729977 1 1 0 -5.76497766413212 LTS-014 chr5 163267 733927 570661 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.104023881942808 57 0.0622027417216817 0.489152822164034 1035 0.170283107448365 1 1 0 -6.73672048503032 LTS-014 chr5 733928 741642 7715 * character(0) NA 0 NA 0.019 1 NA NA NA NA NA LTS-014 chr5 741643 745371 3729 * character(0) 0.081 1 NA 0.707958980501798 7 0.74815703724616 2 2 0 -5.76460364563616 LTS-014 chr5 745372 751371 6000 * character(0) NA 0 NA 0.160513667250821 37 0.168346168451891 0 NA NA -5.79639929116274 LTS-014 chr5 751372 766786 15415 * character(0) NA 0 NA 0.735 1 NA NA NA NA NA LTS-014 chr5 766787 795933 29147 * ZDHHC11 0.378 1 NA 0.515317458132495 11 0.167041366678491 1 1 0 -5.76604783270046 LTS-014 chr5 795934 796437 504 * ZDHHC11 0.295964684460726 14 0.126891512891746 0.647688450564207 29 0.670697104445315 7 5 2 -6.73482798623591 LTS-014 chr5 796438 801172 4735 * ZDHHC11 0.113 1 NA 0.437553520634029 5 0.203018964631386 1 1 0 -5.76528156123989 LTS-014 chr5 801173 16916591 16115419 * c(SNORD123, LOC100130744, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, MARCH6, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, FBXL7, ICE1, LINC01018, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, FLJ33360, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, NA NA NA NA NA NA NA NA NA LTS-014 FAM134B, FAM105A, NSUN2, ANKH, MRPL36, ANKRD33B, SLC6A3, BRD9, SRD5A1, TERT, TRIO, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.102237404925501 139 0.0570573668629689 0.503564180489056 5783 0.159761748336349 1 1 0 -7.01901940940462 LTS-014 NA NA NA NA LTS-014 chr5 16916592 21121325 4204734 * c(CDH18, BASP1, LOC285696, LOC401177, MYO10) NA 0 NA 0.485913240303138 143 0.0974663114487685 1 NA NA -5.77982241415013 LTS-014 chr5 21121326 21459621 338296 * GUSBP1 NA 0 NA 0.827 1 NA NA NA NA NA LTS-014 chr5 21459622 21760731 301110 * c(CDH12, GUSBP1) 0.048 1 NA 0.97101641326419 51 0.246825005883544 2 2 0 -5.79155900481091 LTS-014 chr5 21760732 38528939 16768208 * c(CDH6, MIR4279, EGFLAM-AS2, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, SUB1, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, AMACR, NIPBL, RAI14, GDNF, DROSHA, LOC340107, LOC340113, IL7R, LIFR, NPR3, SLC45A2, RXFP3, ZFR, PMCHL1, MTMR12, WDR70, BRIX1, C5orf22, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, LSP1P3, SPEF2, NA NA NA NA NA NA NA NA NA LTS-014 ADAMTS12, LMBRD2, NUP155) 0.0501575135106213 99 0.0242625855403258 0.869097006475158 6045 0.286666506544883 2 2 0 -6.7847565255305 LTS-014 NA NA NA NA LTS-014 chr5 38528940 38530570 1631 * LIFR NA 0 NA 0.573 1 NA NA NA NA NA LTS-014 chr5 38530571 44389174 5858604 * c(CCDC152, LOC100132356, MIR3650, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.0512697470740011 58 0.0328406158530375 0.810047735791837 3245 0.381458156287354 2 2 0 -6.91200491638233 LTS-014 chr5 44389175 44808948 419774 * character(0) NA 0 NA 1.548 1 NA NA NA NA NA LTS-014 chr5 44808949 44815230 6282 * MRPS30 0.0212301524927885 2 0.0445477272147525 1.31330316622559 36 0.98563725578937 6 6 0 -6.73512729808312 LTS-014 chr5 44815231 45696278 881048 * c(MRPS30, HCN1) NA 0 NA 1.29379196045452 119 0.277510743558156 3 NA NA -5.76590888751194 LTS-014 chr5 49692017 49694583 2567 * EMB 0.115 1 NA 0.4323742906232 45 0.119606285940011 1 1 0 -5.76607425539986 LTS-014 chr5 49694584 51376921 1682338 * c(EMB, ISL1, LOC642366, PARP8) 0.0646149885905112 5 0.066443208832807 0.442467953883553 368 0.132475823559416 1 1 0 -7.42960976741869 LTS-014 chr5 52083711 59726113 7642403 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, GPBP1, MIR449B, MIR581, ANKRD55, PLPP1, HSPB3) 0.0562906658390529 60 0.027471459252219 0.798477047226109 3609 0.226568409182657 2 2 0 -7.51256326886263 LTS-014 chr5 59726114 59892716 166603 * c(PART1, PDE4D) NA 0 NA 1.478 1 NA NA NA NA NA LTS-014 chr5 59892717 60241297 348581 * c(ERCC8, DEPDC1B, ELOVL7, NDUFAF2) 0.0283118014086398 8 0.018062886179757 1.20412272754027 265 0.466466277230224 4 4 0 -6.83449742642065 LTS-014 chr5 60241298 60369010 127713 * NDUFAF2 NA 0 NA 0.732 1 NA NA NA NA NA LTS-014 chr5 60369011 69373289 9004279 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, TRAPPC13, SERF1A, CCNB1, NDUFAF2, MRPS36) 0.0528229414470386 59 0.0278377405923289 0.842421907544993 4005 0.374679651883769 2 2 0 -6.81779549046636 LTS-014 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.03 1 NA NA NA NA NA LTS-014 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) 0.0544958565749094 2 0.045254833995939 0.457137605489742 62 0.223856343694733 1 1 0 -7.30001519474113 LTS-014 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 1.243 1 NA NA NA NA NA LTS-014 chr5 70357051 89816309 19459259 * c(GUSBP9, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-014 NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CARTPT, ZFYVE16) 0.0486801836863224 189 0.027996759272744 0.856606212452182 9242 0.50300910896996 2 2 0 -6.80377313611066 LTS-014 NA NA NA NA LTS-014 chr5 89816310 89816314 5 * LYSMD3 NA 0 NA 0.621 1 NA NA NA NA NA LTS-014 chr5 89816315 90281400 465086 * c(LYSMD3, ADGRV1) 0.103172879045225 10 0.0359221380210031 0.498744288998066 575 0.186734347347566 1 1 0 -6.74325873169765 LTS-014 chr5 90281401 90368232 86832 * ADGRV1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-014 chr5 90368233 110782486 20414254 * c(ARRDC3-AS1, LOC100133050, LOC100289230, LOC100289673, MIR2277, LINC01023, CHD1, SLCO6A1, POU5F2, WDR36, ARSK, FAM81B, LIX1, EFNA5, LINC01554, FER, RHOBTB3, ELL2, PPIP5K2, GLRX, KIAA0825, GPR150, RGMB, RFESD, FAM174A, SLCO4C1, LNPEP, MAN2A1, NR2F1-AS1, RGMB-AS1, PAM, PCSK1, ERAP1, GIN1, RIOK2, ARRDC3, ERAP2, TMEM232, FBXL17, MIR583, NR2F1, ST8SIA4, MCTP1, CAMK4, CAST, NUDT12, SPATA9, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA LTS-014 SLF1, TSLP, C5orf30, SLC25A46, RAB9BP1, TTC37, PJA2) 0.0590796844536529 119 0.0299070796642465 0.816196756739996 5662 0.33012457508966 2 2 0 -7.35686226049581 LTS-014 NA NA NA NA LTS-014 chr5 110782487 111494216 711730 * c(STARD4-AS1, NREP-AS1, STARD4, EPB41L4A, CAMK4, NREP) 0.0331711625014607 11 0.01631173587552 1.10914570747492 461 0.396114973242346 3 3 0 -6.83997920774029 LTS-014 chr5 111494217 118878053 7383837 * c(TMED7-TICAM2, CDO1, EPB41L4A-AS1, AP3S1, CCDC112, DMXL1, DCP2, LVRN, TNFAIP8, DTWD2, APC, HSD17B4, TICAM2, KCNN2, MCC, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, TRIM36, FEM1C, SEMA6A, EPB41L4A, ARL14EPL, YTHDC2, SNORA13, SRP19, LINC00992, REEP5, TSSK1B, ATG12) 0.0618610300611995 92 0.0450240300547364 0.8281653477914 3285 0.257931311432135 2 2 0 -7.00180962194005 LTS-014 chr5 118878054 118965211 87158 * character(0) NA 0 NA 0.997 1 NA NA NA NA NA LTS-014 chr5 118965212 129522229 10557018 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.0438153379098921 52 0.0291322140839981 0.895545976054029 3263 0.297688482789447 2 2 0 -6.83704276346278 LTS-014 chr5 129522230 134332018 4809789 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-014 FNIP1, DDX46) 0.0535216298323672 94 0.0593869437047386 0.831228503065329 4541 0.433649028943327 2 2 0 -6.78734500705373 LTS-014 NA NA NA NA LTS-014 chr5 134332019 137087498 2755480 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.050754766068655 38 0.0208251031633428 0.946221489259063 1332 0.389395617125236 2 2 0 -6.81150127359531 LTS-014 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.683 1 NA NA NA NA NA LTS-014 chr5 137087505 140553623 3466119 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, NA NA NA NA NA NA NA NA NA LTS-014 PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.0467684347464105 87 0.0316844404881278 0.868512755348923 5323 0.258754687814728 2 2 0 -6.78139543682479 LTS-014 NA NA NA NA LTS-014 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.267 1 NA NA NA NA NA LTS-014 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.0615691762963182 4 0.037170777052231 0.340828455955252 65 0.576127942604766 2 2 0 -6.7582722444705 LTS-014 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.132 1 NA NA NA NA NA LTS-014 chr5 140559822 148388184 7828363 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, HTR4, C5orf46, SPINK6, SPINK14, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, NA NA NA NA NA NA NA NA NA LTS-014 PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, LOC729080, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.0537095738676803 141 0.0244748573509746 0.874530780470362 5972 1.80305183242129 2 2 0 -6.73495130604989 LTS-014 NA NA NA NA LTS-014 chr5 148388185 148388444 260 * SH3TC2 NA 0 NA 1.053 1 NA NA NA NA NA LTS-014 chr5 148388445 150036600 1648156 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, PDE6A, PDGFRB, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, CD74) 0.045261212302428 29 0.0242968606701287 0.930762408287162 3073 0.23990702198865 2 2 0 -6.87784047423703 LTS-014 chr5 150036601 175386658 25350058 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, G3BP1, TNIP1, SLU7, CPLX2, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, C5orf47, C5orf58, LSM11, ZNF300P1, NUDCD2, UBLCP1, ADRA1B, NKX2-5, SLC36A2, CREBRF, PPP1R2P3, FAM71B, RNF145, DOCK2, DRD1, DUSP1, EBF1, SLC36A1, FABP6, FAT2, FOXI1, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, NA NA NA NA NA NA NA NA NA LTS-014 GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, HMP19, NEURL1B, SPDL1, THG1L, GALNT10, RBM22, NMUR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ERGIC1, TENM2, RARS, ZBED8, SGCD, RANBP17, SLIT3, BNIP1, SPARC, SNORA74B, STK10, MIR585, TTC1, CCNJL, PANK3, SAP30L, CPEB4, THOC3, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1) 0.052641509820862 167 0.026105143878211 0.86914169737946 11861 0.399365131897828 2 2 0 -6.75935861933564 LTS-014 NA NA NA NA LTS-014 chr5 175386659 175387479 821 * THOC3 NA 0 NA 0.287963224651343 40 0.243699894258365 1 NA NA -5.76674353084084 LTS-014 chr5 175387480 175394264 6785 * THOC3 NA 0 NA 0.463821934708981 39 0.327965797153551 1 NA NA -5.76452112480249 LTS-014 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.441 1 NA NA NA NA NA LTS-014 chr5 175395033 179025789 3630757 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, ZNF354B, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, N4BP3, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, PRR7-AS1, PFN3, ZNF879, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, NHP2, PROP1, KIAA1191, CLK4, LOC643201, NSD1, GMCL1P1, RMND5B, FAM153C, SLC34A1, SNCB, NA NA NA NA NA NA NA NA NA LTS-014 ZNF354A, LOC728554, AACSP1, DOK3, ZFP2, RUFY1, PRR7, MXD3, THOC3, PHYKPL, UNC5A, COL23A1, PDLIM7, ADAMTS2) 0.0531903739375226 96 0.0262289430999488 0.894517876330843 4996 0.277202285280571 2 2 0 -6.74148358318283 LTS-014 NA NA NA NA LTS-014 chr5 179025790 179036433 10644 * RUFY1 0.105 1 NA 0.803970583043594 17 0.258090399689265 2 2 0 -5.76523708357107 LTS-014 chr5 179036434 179125678 89245 * c(C5orf60, HNRNPH1, CBY3, RUFY1, CANX) 0.261895840409273 9 0.188304275044408 0.854446624151235 217 0.275565282328989 3 2 1 -6.95964116129912 LTS-014 chr5 179125679 179126090 412 * CANX 0.023 1 NA 0.642731788088384 3 0.677631414069134 1 1 0 -5.76444988703122 LTS-014 chr5 179126091 180374817 1248727 * c(MIR1229, HEIH, MGAT4B, OR2Y1, TBC1D9B, FLT4, RASGEF1C, LTC4S, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CNOT6, ZFP62, LINC00847, BTNL8, CANX, SQSTM1, SCGB3A1, MAML1, GFPT2) 0.0521803127085417 40 0.0200989698677218 0.895442918693233 1753 0.258706617184313 2 2 0 -6.74774831216573 LTS-014 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.913 1 NA NA NA NA NA LTS-014 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) 0.0403335254613703 3 0.0175594229214212 1.4979572977443 66 0.430839735155983 3 3 0 -6.74715525626422 LTS-014 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 1.006 1 NA NA NA NA NA LTS-014 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.0511045893594509 21 0.0187038320494313 0.862614630531068 523 0.234276079195455 2 2 0 -6.76108311534819 LTS-014 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.900480212618189 21 0.325308871543279 2 NA NA -5.76441227077861 LTS-014 chr6 203389 311938 108550 * DUSP22 0.234 1 NA 1.04541340838374 25 0.185906948050183 2 2 0 -5.81820804010684 LTS-014 chr6 311939 367484 55546 * DUSP22 0.319800581369972 9 0.120459997970742 0.834862522640932 94 0.20737019131977 3 2 1 -6.89580326005647 LTS-014 chr6 367485 391716 24232 * character(0) NA 0 NA 2.766 1 NA NA NA NA NA LTS-014 chr6 391717 26199175 25807459 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, ECI2, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, NA NA NA NA NA NA NA NA NA LTS-014 SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, MYLIP, HIST1H1C, HIST1H1E, HIST1H1T, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, MYLK4, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, ALDH5A1, TXNDC5, C6orf62, TMEM14B, HIST1H2AC, HIST1H2AB, HIST1H2BE, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3B, HIST1H4A, HIST1H4D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 HIST1H4C, HIST1H4B, RIOK1, DTNBP1, CMAHP, ADTRP, RIPK1, PRPF4B, GCM2, CD83, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, KIAA0319, NUP153) 0.329909927169063 274 0.0872250697244096 1.22137842388704 11568 0.411077537900158 3 2 1 -6.91542788283612 LTS-014 NA NA NA NA LTS-014 chr6 26199176 26199338 163 * c(HIST1H2AD, HIST1H3D) NA 0 NA 0.788 1 NA NA NA NA NA LTS-014 chr6 26199339 26216909 17571 * c(HIST1H2AD, HIST1H2BG, HIST1H2BF, HIST1H3D, HIST1H4E) 0.414 1 NA 0.811856017073439 67 0.159731839392163 2 2 0 -5.76726355860227 LTS-014 chr6 26216910 30595079 4378170 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, LOC285819, ABT1, HIST1H1D, HIST1H1B, HIST1H2AE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HCG11, BTN2A3P, ZSCAN31, ZNF192P1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, NA NA NA NA NA NA NA NA NA LTS-014 HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BH, HIST1H2BI, HIST1H2BO, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4H, HIST1H4L, HIST1H4G, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.322931684476621 296 0.060268246657749 1.23112960533003 5203 0.724924231578012 3 2 1 -6.8215478905082 LTS-014 NA NA NA NA LTS-014 chr6 30595080 30595222 143 * character(0) NA 0 NA 1.677 1 NA NA NA NA NA LTS-014 chr6 30595223 31138472 543250 * character(0) 0.349986727196656 105 0.0456252492591917 1.29473009219767 1830 1.85454156894162 3 2 1 -6.73903918828181 LTS-014 chr6 31138473 31165527 27055 * character(0) 0.355 1 NA 0.800598345026444 3 0.378698208780202 2 2 0 -5.76547680355312 LTS-014 chr6 31165528 32489717 1324190 * HLA-DRB5 0.351556212092906 253 0.0808612102442559 1.27900816475445 4860 0.33999679025546 3 2 1 -6.73654926419777 LTS-014 chr6 32489718 32489734 17 * HLA-DRB5 0.377 1 NA 0.578 1 NA NA NA NA NA LTS-014 chr6 32489735 32498118 8384 * HLA-DRB5 0.328038888795085 24 0.0547650945375806 0.907057044349771 39 0.610130722038899 6 4 2 -6.77238138127684 LTS-014 chr6 32498119 32546466 48348 * HLA-DRB5 NA 0 NA 2.112 1 NA NA NA NA NA LTS-014 chr6 32546467 32606779 60313 * c(HLA-DQA1, HLA-DRB5) 0.308634780981985 55 0.107691125220133 1.48437591142 120 1.68196114391381 10 7 3 -6.74650125627614 LTS-014 chr6 32606780 32609271 2492 * HLA-DQA1 0.107 1 NA 1.14959596329035 7 0.439470893992613 3 3 0 -5.76449285339889 LTS-014 chr6 32609272 32725764 116493 * HLA-DQA1 0.19431207035986 72 0.0910488430632767 1.56916410931407 211 1.46620790114786 6 5 1 -6.75448874547449 LTS-014 chr6 32725765 32726623 859 * character(0) NA 0 NA 1.07 1 NA NA NA NA NA LTS-014 chr6 32726624 32795856 69233 * character(0) 0.214449447498357 3 0.16297341296461 1.1663951725154 135 0.321473027581921 4 3 1 -6.84015771666485 LTS-014 chr6 32795857 32797809 1953 * character(0) 0.28 1 NA 1.4174089249822 26 0.308775519655399 3 3 0 -5.76454823797149 LTS-014 chr6 32797810 33035512 237703 * character(0) 0.352593051508084 2 0.0608111831820431 1.22482031042329 530 1.0841173337106 3 2 1 -6.74154429396521 LTS-014 chr6 33035513 33054760 19248 * character(0) 0.320884099592356 5 0.0343292877875437 2.76680347444854 129 30.1105166806631 19 13 6 -6.73732132548874 LTS-014 chr6 33054761 35220560 2165800 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, C6orf1, LEMD2, SCUBE3, ANKS1A, SPDEF, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, UQCC2) 0.324016501190156 50 0.0687723870786073 1.31333951923165 3587 1.00110536372367 3 2 1 -6.79177604002742 LTS-014 chr6 35220561 35220681 121 * character(0) NA 0 NA 1.852 1 NA NA NA NA NA LTS-014 chr6 35220682 35286071 65390 * c(DEF6, ZNF76) NA 0 NA 1.73701492002328 141 0.387262268416389 4 NA NA -5.7648477485111 LTS-014 chr6 35286072 35286105 34 * DEF6 NA 0 NA 1.423 1 NA NA NA NA NA LTS-014 chr6 35286106 37430751 2144646 * c(MIR3925, MIR5690, CDKN1A, STK38, SLC26A8, CLPS, MAPK14, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, KCTD20, PXT1, LHFPL5, FKBP5, CMTR1, MTCH1, BRPF3, LOC285847, PNPLA1, CLPSL1, CLPSL2, C6orf222, RAB44, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, TBC1D22B, MAPK13, CPNE5, SRSF3, SRPK1, TEAD3, TULP1, RNF8) 0.359873270755138 66 0.0673060850956961 1.25230551281539 2896 0.306263269118055 3 2 1 -6.76489401706878 LTS-014 chr6 37430752 38142911 712160 * c(MIR4462, BTBD9, CCDC167, CMTR1, MDGA1, ZFAND3) 0.327104375054433 37 0.0835588929353937 1.42674265432687 661 0.419799673066581 3 2 1 -6.79232354450315 LTS-014 chr6 38142912 39024178 881267 * c(LOC100131047, BTBD9, DNAH8, GLO1, GLP1R) 0.356698530668961 14 0.0426068147054043 1.16438985612564 611 0.250992363962986 3 2 1 -6.842849456156 LTS-014 chr6 39024179 39024277 99 * GLP1R NA 0 NA 1.25 1 NA NA NA NA NA LTS-014 chr6 39024278 41709021 2684744 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, PGC, TREM2, TREM1, SAYSD1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.360005505989325 54 0.0534168371449119 1.36792487567249 1858 0.308805927787252 3 2 1 -6.86018588182382 LTS-014 chr6 41709022 41709510 489 * PGC NA 0 NA 1.271 1 NA NA NA NA NA LTS-014 chr6 41709511 45518202 3808692 * c(LINC01512, TOMM6, MIR4647, MIR4642, DNPH1, CNPY3, FRS3, SLC22A7, CAPN11, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, MRPL2, PEX6, PGC, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, PRPH2, NA NA NA NA NA NA NA NA NA LTS-014 C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, BYSL, VEGFA, TTBK1, SUPT3H, RUNX2, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.347251329965685 96 0.0803482305834717 1.29735522652432 5924 0.310010091407446 3 2 1 -6.74063599787315 LTS-014 NA NA NA NA LTS-014 chr6 45518203 45518634 432 * RUNX2 0.35 1 NA 1.09732581090467 9 0.281388718876772 3 3 0 -5.7644835431468 LTS-014 chr6 45518635 50811393 5292759 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, CLIC5, CENPQ, ENPP5, RHAG, TFAP2B, CRISP2, PLA2G7, TFAP2D, RUNX2, SLC25A27) 0.314591593185873 79 0.0745595135753273 1.28545655836902 2411 0.338070894771893 3 2 1 -6.83585677481018 LTS-014 chr6 50811394 57512678 6701285 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, BEND6, GSTA5, FAM83B, ICK, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, RAB23, PKHD1, HMGCLL1, LRRC1, PRIM2, KIAA1586, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, LOC730101, GSTA7P, COL21A1, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.324743323295598 138 0.100818528821487 1.2283882420166 4442 0.331638326016127 3 2 1 -6.80806877355197 LTS-014 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.28351155207596 19 0.201173181917489 3 NA NA -5.76504974990078 LTS-014 chr6 62390154 62887099 496946 * KHDRBS2 0.355 1 NA 1.20903032401011 63 0.300386451893741 3 3 0 -5.77367118229681 LTS-014 chr6 62887100 144185745 81298646 * c(LIN28B-AS1, TRAPPC3L, KHDC1L, LOC100130476, TSTD3, LINC00271, LOC100132735, LOC100287632, HMGN3-AS1, NHEG1, MIR2113, LOC100422737, MIR3145, MIR4282, MIR3668, MIR3662, LOC100506804, SMLR1, LINC01013, GVQW2, LINC01277, MIR4464, MIR4643, MIR4465, MIR5695, KCNQ5-AS1, LOC100996634, TRDN, CITED2, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, HBS1L, CGA, SMPDL3A, PNRC1, ASCC3, BVES, SEC63, GTF3C6, MRAP2, RWDD2A, MTFR2, KLHL32, NA NA NA NA NA NA NA NA NA LTS-014 TMEM200A, MB21D1, NUS1, IL22RA2, SLC18B1, SLC16A10, CNR1, COL9A1, COL10A1, COL12A1, COL19A1, ADAT2, COX7A2, RIPPLY2, IRAK1BP1, CLVS2, TAAR1, NCOA7, HINT3, B3GAT2, SDHAF4, CD109, PM20D2, SRSF12, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, KHDC3L, CFAP206, BVES-AS1, PRSS35, LCA5, OLIG3, TXLNB, EEF1A1, AIM1, KHDRBS2, EPB41L2, EPHA7, C6orf163, EYA4, FABP7, CCDC162P, AK9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, FOXO3, CDK19, MDN1, TSPYL4, UFL1, PHF3, HEY2, HEBP2, ORC3, BRD7P3, FRK, VGLL2, LACE1, FUCA2, FYN, TMEM244, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, MTO1, ASF1A, CCDC28A, PNISR, IBTK, MOXD1, SENP6, AMD1, FBXL4, SLC17A5, SNORD50A, GJA1, PDE7B, FILIP1, SESN1, GPR6, LINC00326, PHACTR2-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, HIVEP2, TAAR6, HSF2, HTR1B, HTR1E, SLC35D3, DPPA5, RSPH4A, IFNGR1, ECT2L, EYS, C6orf58, IMPG1, GJB7, ARG1, KPNA5, HMGA1P7, SNHG5, NA, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LIN28B, LAMA2, LAMA4, MIR30A, MIR30C2, MARCKS, MAN1A1, ME1, MAP3K5, LOC441155, OOEP, FAM26F, FLJ46906, SLC25A51P1, GSTM2P1, RFPL4B, MYB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MYO6, NMBR, NT5E, HDDC2, CYB5R4, TUBE1, C6orf203, CDC40, RWDD1, AIG1, UBE2J1, VTA1, LGSN, ENPP1, ENPP3, HECA, COQ3, PEX7, PGM3, PLN, IL20RA, POU3F2, AHI1, PHIP, SOBP, AKIRIN2, QRSL1, VNN3, PREP, DDX43, FAM46A, PKIB, TMEM30A, LMBRD1, ECHDC1, KCNQ5, RARS2, PDSS2, GOPC, SMIM8, ADGRG6, ARFGEF3, NHSL1, LYRM2, SNX14, SERINC1, HACE1, FAM135A, BEND3, ADGRB3, PTPRK, ABRACL, RRAGD, PRDM13, PBOV1, BCKDHB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SNORA33, REV3L, BACH2, TRMT11, SMAP1, RNY4, ROS1, FAM229B, RPS12, PRDM1, LINC01590, PERP, POPDC3, TSG1, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, LINC01625, ALDH8A1, MICAL1, SIM1, SMPD2, ELOVL4, MAP3K7, SNORD50B, MIR548B, TCF21, NR2E1, TNFAIP3, TPBG, TPD52L1, TSPYL1, TTK, MCHR2-AS1, TPI1P3, METTL24, PTP4A1, OR2A4, RNF217-AS1, OGFRL1, FAM184A, MANEA, LINC00472, KHDC1, GPR63, SPACA1, RNF146, TAAR8, SH3BGRL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ARMC2, RPF2, STX7, L3MBTL3, MCHR2, FAXC, GJA10, RTN4IP1, RSPO3, LTV1, USP45, REPS1, PEX3, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, VNN2, VNN1, CCNC, WASF1, LINC01621, UBE3D, TAAR5, MAP7, TBX18, MFSD4B, TAAR2, TAAR3, HMGN3, ARHGAP18, MED23, FHL5, AKAP7, ATG5, TBPL1, KIAA0408, PHACTR2, BCLAF1, ZBTB24, SNAP91, FIG4, CASP8AP2) 0.327875055341403 582 0.0940637063443707 1.19678135682872 32188 0.393043619513182 3 2 1 -7.80564157773371 LTS-014 NA NA NA NA LTS-014 chr6 144185746 144205385 19640 * ZC2HC1B NA 0 NA 2.783 1 NA NA NA NA NA LTS-014 chr6 144205386 144612942 407557 * c(ZC2HC1B, PLAGL1, HYMAI, UTRN, SF3B5, STX11) NA 0 NA 1.574527188454 152 0.380612937761482 4 NA NA -5.76994944420979 LTS-014 chr6 144612943 148872352 4259410 * c(LOC100507557, RAB32, STXBP5, SASH1, SHPRH, GRM1, SAMD5, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, FBXO30) 0.33412788278854 45 0.0667153382936515 1.22311058854876 1799 0.311450882054375 3 2 1 -6.79501503768314 LTS-014 chr6 148872353 150140505 1268153 * c(UST-AS1, UST, KATNA1, GINM1, TAB2, SASH1, ZC3H12D, NUP43, SUMO4, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.352543256913624 24 0.104803300921574 1.10243535109874 870 0.254236682199424 3 2 1 -6.9744936539598 LTS-014 chr6 150140506 151670534 1530029 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.369743026821011 39 0.0381373680188632 1.32037229374639 981 0.335149389203197 3 2 1 -6.97759453344743 LTS-014 chr6 151670535 167788005 16117471 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, SYNE1, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, NA NA NA NA NA NA NA NA NA LTS-014 MPC1, PLG, UNC93A, MTRF1L, RMND1, AGPAT4, TULP4, ARID1B, TMEM181, ZBTB2, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, VIP, ARMT1, ZDHHC14, AGPAT4-IT1, CCDC170, MYCT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP, AKAP12) 0.344026948806795 197 0.0731558505018847 1.2417935058282 8647 0.955372658852899 3 2 1 -6.74053703835448 LTS-014 NA NA NA NA LTS-014 chr6 167788006 167794761 6756 * TCP10 0.320324800733487 3 0.152826699238059 0.716764940432902 88 0.528513324569636 3 2 1 -6.75398052201677 LTS-014 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.621 1 NA NA NA NA NA LTS-014 chr6 167796265 170064380 2268116 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.320147156053913 37 0.11174499740232 1.34892442392746 1108 0.392451969270776 3 2 1 -6.79166354326856 LTS-014 chr6 170064381 170592293 527913 * c(LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, LINC00574) 0.308727791659443 16 0.0994360766187672 1.15243389808041 330 0.350186400725146 3 2 1 -6.8398590409899 LTS-014 chr6 170592294 170893599 301306 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 1.20461022450428 369 0.251512483231274 3 NA NA -5.7735653674149 LTS-014 chr7 193047 299652 106606 * FAM20C 0.38 1 NA 0.921719167442669 95 0.164540473140294 2 2 0 -5.76893821886004 LTS-014 chr7 299653 5938228 5638576 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-014 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.451054145580048 175 0.0704126938473739 0.932958940537061 5333 0.254694179095402 2 1 1 -6.93228627239511 LTS-014 NA NA NA NA LTS-014 chr7 5938229 5952632 14404 * CCZ1 NA 0 NA 0.545830259209038 39 0.132298006346018 1 NA NA -5.77023299700331 LTS-014 chr7 5952633 5958446 5814 * CCZ1 NA 0 NA 0.691 1 NA NA NA NA NA LTS-014 chr7 5958447 6797603 839157 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, CCZ1, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.417122172741271 30 0.0985640640022705 0.875686332338761 1382 0.289936451328924 2 1 1 -6.7483211032303 LTS-014 chr7 6797604 6803517 5914 * RSPH10B2 NA 0 NA 0.508 1 NA NA NA NA NA LTS-014 chr7 6803518 6838579 35062 * c(CCZ1B, RSPH10B2) NA 0 NA 0.528486974714022 47 0.309975241469015 1 NA NA -5.76568646670771 LTS-014 chr7 6838580 6838593 14 * CCZ1B NA 0 NA 0.841 1 NA NA NA NA NA LTS-014 chr7 6838594 6863802 25209 * CCZ1B 0.441666501894835 2 0.0212132034355964 1.01893747694418 51 0.553463002288284 2 1 1 -6.83926093321145 LTS-014 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.661 1 NA NA NA NA NA LTS-014 chr7 6864270 8792576 1928307 * c(LOC100131257, GLCCI1, CCZ1B, NXPH1, ICA1, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.44465541797001 13 0.0516637302722231 0.808123936581863 748 0.204178512108451 2 1 1 -6.97129904079486 LTS-014 chr7 10492890 10492909 20 * character(0) 0.468 1 NA 1.304 1 NA NA NA NA NA LTS-014 chr7 10492910 11030523 537614 * c(NDUFA4, PHF14) NA 0 NA 1.53342243678208 83 0.3483371788729 4 NA NA -5.78300507784831 LTS-014 chr7 11030524 11053371 22848 * PHF14 NA 0 NA 0.723 1 NA NA NA NA NA LTS-014 chr7 11053372 11091420 38049 * PHF14 NA 0 NA 0.859973321672213 47 0.208815462352046 2 NA NA -5.76475172167107 LTS-014 chr7 11091421 11101421 10001 * PHF14 NA 0 NA 1.504 1 NA NA NA NA NA LTS-014 chr7 11101422 11509561 408140 * c(THSD7A, PHF14) 0.283 1 NA 1.63747756344607 179 0.31590892744988 4 4 0 -5.76521476699552 LTS-014 chr7 11509562 15346008 3836447 * c(ARL4A, DGKB, ETV1, VWDE, THSD7A, AGMO, TMEM106B, SCIN) 0.254157243069154 22 0.0363316850970519 1.63735850166641 1001 0.470727677123398 4 3 1 -6.78541519161984 LTS-014 chr7 15346009 15346034 26 * AGMO NA 0 NA 2.102 1 NA NA NA NA NA LTS-014 chr7 15346035 17385723 2039689 * c(ISPD-AS1, LRRC72, AGR2, AGR3, AHR, SOSTDC1, TSPAN13, BZW2, AGMO, MEOX2, ANKMY2, ISPD) 0.20157978380141 7 0.0904372974049134 1.95062293340771 706 0.446210294471217 5 4 1 -6.7628951973461 LTS-014 chr7 17385724 17832615 446892 * c(AHR, SNX13) NA 0 NA 1.247 1 NA NA NA NA NA LTS-014 chr7 17832616 17854532 21917 * SNX13 0.238410115040489 5 0.0939398743878232 1.5310726874328 103 0.425292609318377 5 4 1 -6.77907102092378 LTS-014 chr7 17854533 17890673 36141 * SNX13 NA 0 NA 1.66942759796712 43 0.311434476256415 4 NA NA -5.76441046423671 LTS-014 chr7 17890674 17908000 17327 * SNX13 NA 0 NA 1.107 1 NA NA NA NA NA LTS-014 chr7 17908001 17908130 130 * SNX13 0.303 1 NA 1.17523232176699 3 0.37629288238463 3 3 0 -5.76441375062535 LTS-014 chr7 17908131 27133751 9225621 * c(MIR3146, LOC100506178, KLHL7-AS1, RNU6-16P, MACC1-AS1, GPNMB, IGF2BP3, NUPL2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, PRPS1L1, TWISTNB, SP8, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, ABCB5, FAM221A, MACC1, IL6, ITGB8, MIR148A, LOC441204, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SP4, SNORD93, TWIST1, FAM126A, DNAH11, SKAP2, CCDC126, NA NA NA NA NA NA NA NA NA LTS-014 NFE2L3, HDAC9, RAPGEF5, KIAA0087) 0.323977723973231 79 0.0923306998266401 1.22021409048662 4174 0.438520663937337 3 2 1 -6.81988968689675 LTS-014 NA NA NA NA LTS-014 chr7 27133752 30876359 3742608 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, DPY19L2P3, MIR196B, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, CREB5, SCRN1, NA NA NA NA NA NA NA NA NA LTS-014 TRIL) 0.328597034106224 50 0.0970418066860771 1.28988756439691 2765 0.314024505499987 3 2 1 -6.75416789422391 LTS-014 NA NA NA NA LTS-014 chr7 30876360 31823235 946876 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.282927908059927 21 0.139849323678498 1.47844680940556 729 0.642695056361563 4 3 1 -6.76317363922432 LTS-014 chr7 31823236 41728661 9905426 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, FKBP9, MPLKIP, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, INHBA, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, SUGCT, EEPD1, STARD3NL, CDK13, NA NA NA NA NA NA NA NA NA LTS-014 ELMO1, SEPT7) 0.318761607678174 114 0.0839813806890403 1.24780711977528 3976 0.619979327088347 3 2 1 -6.79999784553345 LTS-014 NA NA NA NA LTS-014 chr7 41728662 41728719 58 * INHBA NA 0 NA 1.485 1 NA NA NA NA NA LTS-014 chr7 41728720 44868894 3140175 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, YKT6, AEBP1, TMED4, HECW1, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, DBNL, NPC1L1, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, MYL7, BLVRA, MRPS24, MRPL32, C7orf25, CAMK2B, ZMIZ2, POLR2J4, STK17A, H2AFV) 0.317884117052728 44 0.0491033933111787 1.32951541761911 2713 0.700414737479705 3 2 1 -6.92287635926273 LTS-014 chr7 44868895 44869179 285 * H2AFV NA 0 NA 1.174 1 NA NA NA NA NA LTS-014 chr7 44869180 45002292 133113 * c(PURB, MYO1G, H2AFV) 0.306861508272217 5 0.0457875528937723 1.08179890432224 230 0.199540079165737 3 2 1 -7.18465127360176 LTS-014 chr7 45002293 45002336 44 * MYO1G NA 0 NA 1.25 1 NA NA NA NA NA LTS-014 chr7 45002337 47852861 2850525 * c(RAMP3, ADCY1, PKD1L1, NACAD, SNHG15, IGFBP1, IGFBP3, C7orf65, MYO1G, SEPT7P2, TNS3, SNORA5B, SNORA5C, SNORA9, C7orf69, CCM2, LINC00525, TBRG4) 0.340323082400028 31 0.0726755198316166 1.33329740171033 1309 0.289770591386442 3 2 1 -6.77669352211446 LTS-014 chr7 47852862 56126360 8273499 * c(DDC-AS1, C7orf72, EGFR-AS1, IKZF1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, EGFR, VSTM2A, COBL, SEC61G, SUN3, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, HUS1, SEPT14, ZNF713, FKBP9P1, VWC2, LINC01446, MRPS17, LANCL2, PSPH, FIGNL1, UPP1, C7orf69, VOPP1, CCT6A) 0.341860531533154 76 0.079781530641991 1.23663716401036 3208 0.303390419829309 3 2 1 -6.78367063798336 LTS-014 chr7 56126361 56147977 21617 * c(SUMF2, PHKG1, PSPH, SNORA15, CCT6A) 0 1 NA 1.24683015037737 116 0.2299378711472 3 3 0 -5.76453097016441 LTS-014 chr7 56147978 57233554 1085577 * c(LOC100130849, DKFZp434L192, SUMF2, NUPR2, CHCHD2, PHKG1, PSPH, GUSBP10, LOC650226, ZNF479) 0.25791519572952 10 0.182238427463706 1.38225788506658 113 0.393648802740288 4 3 1 -6.87815323644439 LTS-014 chr7 57233555 57533232 299678 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 1.21288550437678 97 0.396277883394592 3 NA NA -5.76724808045412 LTS-014 chr7 62758725 63023528 264804 * ZNF733P 0.246 1 NA 0.970376994741312 7 0.577693031025334 2 2 0 -5.76872534820786 LTS-014 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.441154904746803 11 0.143805993047451 0.843031805544071 594 0.23725282495137 2 1 1 -6.77046636261678 LTS-014 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.602 1 NA NA NA NA NA LTS-014 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) NA 0 NA 0.50019866529235 93 0.159317005898292 1 NA NA -5.76994740628767 LTS-014 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.731 1 NA NA NA NA NA LTS-014 chr7 65159973 76634171 11474199 * c(POM121C, LOC100133091, MIR4284, MIR3914-1, MIR3914-2, MIR4651, MIR4650-1, MIR4650-2, CCL26, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, NA NA NA NA NA NA NA NA NA LTS-014 STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, RHBDD2, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 POM121) 0.417600698947066 85 0.107656576089666 0.903277583268766 5041 0.38928078536764 2 1 1 -6.76998204589378 LTS-014 NA NA NA NA LTS-014 chr7 76634172 76634204 33 * DTX2P1-UPK3BP1-PMS2P11 NA 0 NA 0.618 1 NA NA NA NA NA LTS-014 chr7 76634205 77648116 1013912 * c(PMS2P9, APTR, FGL2, RSBN1L, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, TMEM60, MAGI2) 0.421914177362295 16 0.11920778428162 0.798517402497743 818 0.205024185310352 2 1 1 -6.87842456196031 LTS-014 chr7 77648117 86507826 8859710 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.412166042392553 53 0.129195919561532 0.904038508684726 2107 0.262379269549205 2 1 1 -6.79387859834647 LTS-014 chr7 86507827 89912368 3404542 * c(DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, STEAP2, STEAP1, DPY19L2P4, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, CFAP69, DMTF1) 0.42963816031906 20 0.145660699825602 0.834024294471525 2151 0.226955467724524 2 1 1 -6.85593355441096 LTS-014 chr7 89912369 89915611 3243 * CFAP69 NA 0 NA 0.566 1 NA NA NA NA NA LTS-014 chr7 89915612 90045244 129633 * c(LOC101409256, CFAP69, GTPBP10, CLDN12) NA 0 NA 0.502163682578478 283 0.123477144109385 1 NA NA -5.76766552774109 LTS-014 chr7 90045245 90225830 180586 * c(CDK14, CLDN12) NA 0 NA 1.135 1 NA NA NA NA NA LTS-014 chr7 90225831 93625700 3399870 * c(MIR4652, AKAP9, CDK6, BET1, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, CDK14, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, FZD1, RBM48, NA, KRIT1) 0.437589680921036 23 0.10002474002266 0.798324621252119 2444 0.176589195676492 2 1 1 -7.32546942803449 LTS-014 chr7 93625701 93628493 2793 * BET1 NA 0 NA 1.058 1 NA NA NA NA NA LTS-014 chr7 93628494 99056951 5428458 * c(MIR3609, LOC100506136, ATP5J2-PTCD1, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, PDAP1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, PTCD1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, SHFM1, TRRAP, MYH16, BUD31, SGCE, ATP5J2) 0.415819416568931 57 0.155036457835392 0.899155961548621 3636 0.230967933542005 2 1 1 -6.76212551184585 LTS-014 chr7 99056952 99689133 632182 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, COPS6, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, AZGP1P1, CYP3A43, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.440388036864535 25 0.108244830515519 0.826750820481318 1389 0.179940024234733 2 1 1 -6.78505497497387 LTS-014 chr7 99689134 100549499 860366 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPHB4, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, MEPCE, SLC12A9, MOSPD3, GIGYF1, TAF6, TFR2, TRIP6, ZAN, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.438524508587801 49 0.0872848326274544 0.917853654660669 2882 1.88099535178935 2 1 1 -6.73592419529331 LTS-014 chr7 100549500 100549505 6 * character(0) NA 0 NA 1.859 1 NA NA NA NA NA LTS-014 chr7 100549506 100550184 679 * character(0) 0.393144799399199 20 0.0573813650293506 1.54871685445571 38 0.375964694666728 10 6 4 -6.73902620485954 LTS-014 chr7 100550185 100550203 19 * character(0) 0.092 1 NA 1.26965777830009 3 0.29457087432399 3 3 0 -5.76441013669474 LTS-014 chr7 100550204 100550726 523 * character(0) 0.247615663088953 12 0.109207440916428 1.45600283048933 20 0.21937290409855 8 6 2 -6.74212162592745 LTS-014 chr7 100550727 100550766 40 * character(0) 0.075 1 NA 0.085 1 NA NA NA NA NA LTS-014 chr7 100550767 100550889 123 * character(0) 0.250266079896949 4 0.101383759383181 0.570935534166075 26 0.288294955797811 12 9 3 -6.73837906220116 LTS-014 chr7 100550890 100551035 146 * character(0) 0.359 1 NA 0.828814324307729 11 0.366468676572897 2 2 0 -5.76441266101243 LTS-014 chr7 100551036 100551065 30 * character(0) 0.277 1 NA 1.085 1 NA NA NA NA NA LTS-014 chr7 100551066 100551106 41 * character(0) 0.314 1 NA 1.163 1 NA NA NA NA NA LTS-014 chr7 100551107 100552854 1748 * character(0) 0.340637859951361 69 0.080638463572489 1.40337653349972 109 0.407363402327989 6 4 2 -6.73512420401497 LTS-014 chr7 100552855 100552867 13 * character(0) 0.342 1 NA 0.956 1 NA NA NA NA NA LTS-014 chr7 100552868 100616288 63421 * MUC12 0.390394487161734 32 0.0778800191257826 1.09250972069328 116 0.461701268321211 5 3 2 -6.81188132050538 LTS-014 chr7 100616289 100634356 18068 * MUC12 0.448 1 NA 0.985149947066651 19 0.359135202350384 2 2 0 -5.7654333859017 LTS-014 chr7 100634357 101747829 1113473 * c(MIR4653, MUC12, ZNHIT1, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3, MYL10) 0.429056051345287 39 0.105884195647836 0.943248834556101 1188 0.263143478188517 2 1 1 -6.77659690466367 LTS-014 chr7 101747830 101754910 7081 * CUX1 NA 0 NA 0.575 1 NA NA NA NA NA LTS-014 chr7 101754911 101848458 93548 * CUX1 0.122 1 NA 0.50928539461334 91 0.122663178800549 1 1 0 -5.77018096575339 LTS-014 chr7 101848459 101870594 22136 * CUX1 NA 0 NA 1.053 1 NA NA NA NA NA LTS-014 chr7 101870595 101962214 91620 * c(MIR4285, SH2B2, CUX1) 0.328069812079931 8 0.204511089465304 1.0059157961661 373 0.323137536877183 3 2 1 -6.76674972343632 LTS-014 chr7 101962215 102016628 54414 * c(LOC100289561, LOC100630923, SPDYE6) NA 0 NA 0.807 1 NA NA NA NA NA LTS-014 chr7 102016629 116862976 14846348 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR3666, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, POLR2J2, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NA NA NA NA NA NA NA NA NA LTS-014 NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, LRRN3, ALKBH4, POLR2J3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, PRKRIP1, ST7, CBLL1, ORAI2, CAPZA2, ARMC10, IMMP2L, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, FOXP2, PMPCB, DOCK4) 0.437628667109821 97 0.0890059495964954 0.832375681734539 7325 0.230360873003933 2 1 1 -7.25490304852708 LTS-014 NA NA NA NA LTS-014 chr7 116862977 117021039 158063 * c(ASZ1, WNT2, ST7) 0 1 NA 0.934426116704771 127 0.226721878959002 2 2 0 -5.77050125731092 LTS-014 chr7 117021040 120979568 3958529 * c(CFTR, ASZ1, TSPAN12, KCND2, WNT16, LSM8, ING3, ANKRD7, CPED1, CTTNBP2) 0.300038660045155 9 0.222975023514095 0.85578951376609 1127 0.258950416911666 2 1 1 -6.97085176388939 LTS-014 chr7 120979569 121164363 184795 * c(FAM3C, WNT16) 0.446 1 NA 0.737161747224204 139 0.223051346650549 2 2 0 -5.83547753998103 LTS-014 chr7 121164364 127221268 6056905 * c(AASS, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, MIR592, TMEM229A, GCC1, WASL, CADPS2) 0.399209135572799 30 0.163254758252107 0.849917766152544 1844 0.276664063048601 2 1 1 -6.8235410392973 LTS-014 chr7 127221269 138490334 11269066 * c(LOC100130705, LOC100130880, SMKR1, MIR4468, RNA5SP244, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, TMEM213, MGC27345, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, SLC13A4, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, WDR91, HILPDA, FSCN3, MESTIT1, TSPAN33, AGBL3, FAM71F2, STRA8, LOC349160, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, FAM180A, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, NA NA NA NA NA NA NA NA NA LTS-014 MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, CNOT4, NRF1, ATP6V0A4, PAX4, CPA4, ZC3HC1, PODXL, CHCHD3, RBM28, TMEM140, METTL2B, AKR1B10, MIR490, STRIP2, PTN, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, CREB3L2, SMO, BPGM, AKR1D1, MIR593, UBE2H, LUZP6, C7orf49, GCC1, CALD1, CALU, FAM71F1, SLC35B4, TMEM209, TRIM24, PLXNA4, DGKI, ATP6V1F, CPA5, CEP41) 0.443723543455339 167 0.0872247002278961 0.89322035384496 7757 0.236826258956242 2 1 1 -6.76103298475896 LTS-014 NA NA NA NA LTS-014 chr7 138490335 142119831 3629497 * c(LOC100129148, JHDM1D-AS1, NDUFB2-AS1, MOXD2P, TMEM178B, C7orf55-LUC7L2, OR9A4, PRSS37, PRSS58, CLEC2L, FMC1, TMEM213, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, KIAA1549, PARP12, BRAF, SSBP1, TBXAS1, NA, TTC26, KDM7A, SLC37A3, MGAM, ADCK2, ZC3HAV1L, MGAM2) 0.428528624505735 76 0.106547753893027 0.855468214961851 4064 0.230766285893394 2 1 1 -6.77248635788534 LTS-014 chr7 142119832 142119928 97 * character(0) 0.226 1 NA 0.995865709252054 3 0.603231298922727 2 2 0 -5.76441245859547 LTS-014 chr7 142119929 142494984 375056 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.30511696051233 54 0.100692001199304 1.13737086668847 363 1.44276549078622 3 2 1 -6.82908588543227 LTS-014 chr7 142494985 142495106 122 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-014 chr7 142495107 142498813 3707 * character(0) 0.273944858047597 6 0.092510359780225 0.841729642040709 14 0.12790993139491 4 3 1 -6.80201720869105 LTS-014 chr7 142498814 142498833 20 * character(0) 0.428 1 NA 0.595 1 NA NA NA NA NA LTS-014 chr7 142498834 143305591 806758 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.443912779907782 27 0.101232462165115 0.87476676800751 1354 0.217928832782178 2 1 1 -6.74110908700325 LTS-014 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.11321962555111 39 0.101581568774605 0 NA NA -5.78587757773541 LTS-014 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.741 1 NA NA NA NA NA LTS-014 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.469643435312162 10 0.0238096619043614 0.924910179980798 281 0.349784476092497 2 1 1 -7.91673502453294 LTS-014 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.363 1 NA NA NA NA NA LTS-014 chr7 143883365 144074299 190935 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.459528856861415 2 0.000707106781186587 0.615607389981875 155 0.369982340297998 2 1 1 -23.8367182417468 LTS-014 chr7 144074300 149190158 5115859 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, C7orf33, EZH2, CNTNAP2, TPK1, ZNF777, ZNF398, ARHGEF5, ZNF212, ZNF282, CUL1, PDIA4) 0.451966023934787 46 0.0415980071986454 0.880715727824552 1733 1.51804296558837 2 1 1 -6.85898613776097 LTS-014 chr7 149190159 149191160 1002 * ZNF746 NA 0 NA 1.154 1 NA NA NA NA NA LTS-014 chr7 149191161 149558612 367452 * c(ZNF746, ZNF467, SSPO, ZNF862, ZNF767P, KRBA1) 0.46321212902097 23 0.0322734120063194 0.984563926938711 833 0.209608940508417 2 1 1 -7.28612451562057 LTS-014 chr7 149558613 150558644 1000032 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, ATP6V0E2, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, ATP6V0E2-AS1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ZNF862, ACTR3C, LRRC61, LOC728743) 0.444989487085185 68 0.0487601208512224 0.852627336194649 1214 0.193548850695334 2 1 1 -6.78946385887096 LTS-014 chr7 150558645 150642080 83436 * KCNH2 NA 0 NA 1.04 1 NA NA NA NA NA LTS-014 chr7 150642081 151261322 619242 * c(WDR86-AS1, MIR3907, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, RHEB, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.439998305966967 41 0.111730899497136 0.940889916720707 1745 0.209478244461027 2 1 1 -6.77047667120532 LTS-014 chr7 151261323 151262299 977 * PRKAG2 NA 0 NA 0.685 1 NA NA NA NA NA LTS-014 chr7 151262300 154859429 3597130 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, PRKAG2-AS1, GALNTL5, DPP6, PAXIP1-AS1, FABP5P3, PAXIP1, PRKAG2, ACTR3B, KMT2C, GALNT11, XRCC2) 0.376578482239006 17 0.0952405622929766 0.861285449923666 1412 0.205145033854502 2 1 1 -6.96392903635609 LTS-014 chr7 154859430 154859960 531 * HTR5A-AS1 0 1 NA 0.84747904706063 9 0.541414915855771 2 2 0 -5.76441188596623 LTS-014 chr7 154859961 155101375 241415 * c(HTR5A-AS1, HTR5A, INSIG1) 0.324379867238915 11 0.224821019722558 0.89174667051283 186 0.535907698209038 3 2 1 -6.80201516073796 LTS-014 chr7 155101376 155149703 48328 * INSIG1 0.428 1 NA 0.704100684359867 17 0.141325370313039 2 2 0 -5.83735499041973 LTS-014 chr7 155149704 155188879 39176 * character(0) 0.448460141142872 18 0.0283714852707888 0.996422249467802 80 0.413757323350998 2 1 1 -6.91460286579056 LTS-014 chr7 155188880 155255992 67113 * EN2 0.404 1 NA 0.948113316581817 45 0.187783420810553 2 2 0 -5.77032878251984 LTS-014 chr7 155255993 156763589 1507597 * c(C7orf13, RNF32, RBM33, EN2, CNPY1, LOC285889, LMBR1, LINC00244, NOM1, SHH) 0.384919332908714 43 0.157293716974895 0.866416819524496 996 0.281418282523814 2 1 1 -6.79163246200566 LTS-014 chr7 156763590 156764039 450 * NOM1 0.417 1 NA 0.889924521372356 11 0.179775415449388 2 2 0 -5.76441076435013 LTS-014 chr7 156764040 158937585 2173546 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.459416876405403 37 0.0373889747844928 0.85824581918129 1354 0.513085684973217 2 1 1 -7.02838916525129 LTS-014 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.735 2 0 0 NA NA -Inf LTS-014 chr8 182757 196274 13518 * ZNF596 0.45 1 NA 0.79077775056965 45 0.248498161690658 2 2 0 -5.76598241276223 LTS-014 chr8 196275 7343998 7147724 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.440792338731113 96 0.059101815212424 0.886019532070055 2338 0.24589856048242 2 1 1 -6.74555027247876 LTS-014 chr8 7343999 7398443 54445 * DEFB107A NA 0 NA 0.415 1 NA NA NA NA NA LTS-014 chr8 7398444 7718547 320104 * c(FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0 1 NA 0.378006182681287 50 0.608904913323409 1 1 0 -5.79889238734854 LTS-014 chr8 7718548 7720953 2406 * SPAG11A NA 0 NA 0.764 1 NA NA NA NA NA LTS-014 chr8 7720954 24207533 16486580 * c(NAT2, LOC100128993, FAM66E, ZNF705B, FAM66D, FAM66A, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, LOC100507156, MIR4660, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, ADAM28, LZTS1, CLDN23, VPS37A, NKX2-6, SGCZ, CTSB, LOC157273, SGK223, PEBP4, LINC00599, TDH, C8orf48, DEFB4A, EGR3, R3HCC1, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, NA NA NA NA NA NA NA NA NA LTS-014 GATA4, FGF20, GFRA2, FAM86B3P, XKR6, LOC286059, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC389641, USP17L8, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PINX1, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, PDLIM2, SFTPC, USP17L3, FAM160B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, POLR3D, STC1, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, BIN3-IT1, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, CHMP7, MFHAS1, RP1L1, ENTPD4, PHYHIP) 0.442329016515942 279 0.0736113053462152 0.899415895818755 9655 1.28806189658908 2 1 1 -6.74548786859433 LTS-014 NA NA NA NA LTS-014 chr8 24207534 24208716 1183 * ADAM28 NA 0 NA 0.835 1 NA NA NA NA NA LTS-014 chr8 24208717 39142479 14933763 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, NRG1-IT3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, UNC5D, LETM2, ADRA1A, ADRB3, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EIF4EBP1, HTRA4, ADAM32, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, DDHD2, KIF13B, LEPROTL1, ADGRA2, LSM1, ADAMDEC1, GNRH1, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, NUGGC, NA NA NA NA NA NA NA NA NA LTS-014 C8orf86, NEFM, NEFL, SCARA3, SARAF, PNOC, KCTD9, WHSC1L1, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, INTS9, PBK, ZNF395, TEX15, PLEKHA2, LINC00589, MBOAT4, EBF2, BNIP3L, STAR, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, DOCK5, ZNF703, TTI2, RAB11FIP1, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, ASH2L, BAG4) 0.4342718444207 146 0.0786151740020506 0.863063157590321 9202 0.214365054989429 2 1 1 -6.82583360139961 LTS-014 NA NA NA NA LTS-014 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.387 1 NA NA NA NA NA LTS-014 chr8 39311551 39349441 37891 * ADAM3A 0.443 1 NA 1.60094181865533 56 0.549826931152685 4 4 0 -5.764534546072 LTS-014 chr8 39349442 39349467 26 * ADAM3A NA 0 NA 0.908 1 NA NA NA NA NA LTS-014 chr8 39349468 41800140 2450673 * c(LOC100130964, GPAT4, NKX6-3, ADAM3A, IDO2, ADAM2, ANK1, IDO1, GOLGA7, C8orf4, MIR486-1, SFRP1, ZMAT4, KAT6A, GINS4, ADAM18) 0.448224665505756 17 0.0237667897310017 0.926079655392075 1437 0.238703176725441 2 1 1 -7.03867424933678 LTS-014 chr8 41800141 43047593 1247453 * c(MIR4469, AP3M2, CHRNB3, SMIM19, HGSNAT, FNTA, DKK4, IKBKB, PLAT, POLB, THAP1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.446270330413275 11 0.144451942307342 0.836461028311683 1351 0.192344143824614 2 1 1 -6.79517293667321 LTS-014 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 0.942840629159559 143 0.237915058583847 2 NA NA -5.77209823291916 LTS-014 chr8 47752736 48504629 751894 * c(LOC100287846, SPIDR, LINC00293) 0.447 1 NA 0.824907914121617 157 0.170172770571168 2 2 0 -5.83389364973722 LTS-014 chr8 48504630 48976305 471676 * c(CEBPD, SPIDR, MCM4, PRKDC, UBE2V2) 0.411727376982692 2 0.0756604255869606 0.816374489489585 790 0.19977486118859 2 1 1 -6.82117284440825 LTS-014 chr8 48976306 60031745 11055440 * c(SBF1P1, LINC00968, LINC01606, LYPLA1, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CYP7A1, SDR16C5, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.316946259668096 74 0.127487978830909 1.21625915499418 3490 0.319185271282363 3 2 1 -6.90342275178194 LTS-014 chr8 60031746 61429613 1397868 * c(RAB2A, CA8, TOX) NA 0 NA 1.67313459669662 51 0.29573154492997 4 NA NA -5.76452310569413 LTS-014 chr8 61429614 61429698 85 * RAB2A NA 0 NA 0.91 1 NA NA NA NA NA LTS-014 chr8 61429699 61880356 450658 * c(LOC100130298, CHD7, RAB2A) 0.036975303601297 3 0.0204287379280594 1.09545437606731 454 0.273311467539953 3 3 0 -6.81699505284913 LTS-014 chr8 61880357 62003431 123075 * character(0) NA 0 NA 1.653 1 NA NA NA NA NA LTS-014 chr8 62003432 63976754 1973323 * c(MIR4470, CLVS1, NKAIN3, ASPH, UG0898H09, TTPA, GGH) 0.221623953553774 14 0.0787018298515226 1.61056746367225 558 0.709468305929308 5 4 1 -6.87759125032348 LTS-014 chr8 63976755 64100365 123611 * c(YTHDF3-AS1, YTHDF3, TTPA) NA 0 NA 1.62650686120468 67 0.217371772689531 4 NA NA -5.76537785586819 LTS-014 chr8 64100366 64122204 21839 * YTHDF3 NA 0 NA 0.966 1 NA NA NA NA NA LTS-014 chr8 64122205 65508862 1386658 * c(MIR124-2HG, YTHDF3, BHLHE22, LINC01289, LOC401463, MIR124-2, CYP7B1) 0.467 1 NA 0.945869294578928 127 0.281697789606905 2 2 0 -5.81485941063934 LTS-014 chr8 65508863 67430528 1921666 * c(LINC00967, RRS1-AS1, ADHFE1, CRH, RRS1, C8orf46, LINC01299, PDE7A, ARMC1, LINC00251, TRIM55, DNAJC5B, CYP7B1, MTFR1) 0.464127418036181 10 0.0305186645987155 0.816608381182158 789 0.192287969995034 2 1 1 -7.49059628422192 LTS-014 chr8 67430529 67430548 20 * C8orf46 NA 0 NA 1.865 1 NA NA NA NA NA LTS-014 chr8 67430549 67883225 452677 * c(TCF24, C8orf44-SGK3, MCMDC2, SGK3, C8orf46, PTTG3P, MYBL1, C8orf44, SNHG6, SNORD87, VCPIP1) NA 0 NA 1.48532860533566 641 0.424147298323032 4 NA NA -5.78452855552753 LTS-014 chr8 67883226 67883241 16 * character(0) NA 0 NA 1.259 1 NA NA NA NA NA LTS-014 chr8 67883242 68536488 653247 * c(ARFGEF1, COPS5, PPP1R42, CPA6, CSPP1) NA 0 NA 1.23700762363832 603 0.290717284545969 3 NA NA -5.7686099196461 LTS-014 chr8 68536489 68658208 121720 * CPA6 NA 0 NA 0.921 1 NA NA NA NA NA LTS-014 chr8 68658209 72942210 4284002 * c(MSC-AS1, LINC01592, NCOA2, C8orf34, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, PREX2, SLCO5A1, TRPA1, MSC) 0.399747348509957 38 0.156913581238975 0.890056375457418 1725 0.263016252496723 2 1 1 -6.76228531516092 LTS-014 chr8 72942211 72963133 20923 * c(MSC-AS1, TRPA1) 0 1 NA 0.925383254819698 43 0.497307939966709 2 2 0 -5.76452592611222 LTS-014 chr8 72963134 72987549 24416 * c(MSC-AS1, TRPA1) 0.431480319842629 3 0.0738534585062428 0.80624778750557 72 0.230538228509681 2 1 1 -6.73542919069845 LTS-014 chr8 72987550 72987596 47 * TRPA1 NA 0 NA 1.029 1 NA NA NA NA NA LTS-014 chr8 72987597 74917177 1929581 * c(STAU2-AS1, C8orf89, RDH10, SBSPON, LY96, STAU2, LOC392232, TMEM70, UBE2W, RPL7, TCEB1, TERF1, TRPA1, KCNB2) 0.348107027534666 8 0.110574796921748 1.13829699280347 931 0.329685494996767 3 2 1 -6.86701217453673 LTS-014 chr8 74917178 74922205 5028 * LY96 NA 0 NA 1.52 1 NA NA NA NA NA LTS-014 chr8 74922206 99761646 24839441 * c(C8orf88, LRRC69, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, POP1, WWP1, STMN2, SLC26A7, FAM92A1, NDUFAF6, DCAF4L2, RALYL, C8orf37, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ERICH5, FABP4, FABP5, HEY1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, NA NA NA NA NA NA NA NA NA LTS-014 DPY19L4, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, C8orf87, RBM12B, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, PEX2, RPL30, ZNF704, LINC01298, SDC2, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ZFAND1, ZFHX4, NIPAL2, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, CHMP4C, TP53INP1, PTDSS1) 0.321354483677083 185 0.101143111602703 1.23126422564993 9128 0.388686246634737 3 2 1 -6.88369789002769 LTS-014 NA NA NA NA LTS-014 chr8 99761647 99779470 17824 * STK3 NA 0 NA 2.024 1 NA NA NA NA NA LTS-014 chr8 99779471 99964303 184833 * c(OSR2, STK3) NA 0 NA 1.70520973178301 66 0.241944186767299 4 NA NA -5.765362398848 LTS-014 chr8 99964304 104082006 4117703 * c(MIR875, MIR4471, MIR5680, OSR2, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, MIR599, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.333448023099803 25 0.112378052424246 1.16598349640857 2224 0.296323012845265 3 2 1 -6.95591433778676 LTS-014 chr8 104082007 128431385 24349379 * c(LINC00861, FAM83A-AS1, MIR2053, MIR3151, BAALC-AS1, MIR3610, ZHX1-C8orf76, MIR4663, PCAT1, LINC00536, TRIB1, COLEC10, RNF139, ZHX1, MAL2, CSMD3, FBXO32, CTHRC1, ZNF572, ABRA, TMEM65, LINC00964, BAALC-AS2, FAM84B, TMEM74, FAM91A1, SLC30A8, DPYS, EXT1, ZHX2, ZFPM2, DCAF13, KCNV1, MTBP, ANGPT1, NSMCE2, MRPL13, ATAD2, LRP12, HAS2, ANXA13, KLHL38, RSPO2, EIF3E, SAMD12, FER1L6-AS1, AARD, NDUFB9, NOV, TNFRSF11B, NA NA NA NA NA NA NA NA NA LTS-014 ENPP2, ATP6V1C1, POU5F1B, TRMT12, OXR1, WDYHV1, SAMD12-AS1, SYBU, ENY2, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, TRHR, TRPS1, CASC8, COL14A1, DSCC1, DERL1, BAALC, SLC25A32, DCSTAMP, FZD6, TATDN1, UTP23, C8orf76, NUDCD1, FAM83A, EIF3H, MED30, EBAG9, PKHD1L1, TBC1D31, EMC2, RIMS2, MTSS1, KIAA0196) 0.309564390502444 98 0.100180932467012 1.24433840718664 8002 1.32361143093317 3 2 1 -6.81382777671438 LTS-014 NA NA NA NA LTS-014 chr8 128431386 130496412 2065027 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MYC, PVT1, CASC8, LINC00977) NA 0 NA 1.22005520578882 119 0.185107709515082 3 NA NA -5.8333102414043 LTS-014 chr8 130496413 130760473 264061 * GSDMC NA 0 NA 0.598 1 NA NA NA NA NA LTS-014 chr8 130760474 130760850 377 * GSDMC 0.096 1 NA 0.617799326802528 7 0.342917316148202 1 1 0 -5.76451384455235 LTS-014 chr8 130760851 130778000 17150 * GSDMC 0.114837108700234 3 0.0268886593194975 0.51474671235381 54 0.213167571869446 1 1 0 -6.9311321325692 LTS-014 chr8 130778001 130788384 10384 * GSDMC NA 0 NA 1.015 1 NA NA NA NA NA LTS-014 chr8 130788385 130891759 103375 * c(FAM49B, GSDMC) 0.382 1 NA 1.0590841319015 79 0.234661923702106 2 2 0 -5.80177957506407 LTS-014 chr8 130891760 131020578 128819 * FAM49B NA 0 NA 0.639 1 NA NA NA NA NA LTS-014 chr8 131020579 131353139 332561 * c(ASAP1-IT2, MIR5194, ASAP1-IT1, ASAP1, FAM49B) 0.0982434018061299 7 0.0402740611312045 0.452665626847411 191 0.137728997565728 1 1 0 -6.79747122651988 LTS-014 chr8 131353140 132054651 701512 * c(ADCY8, ASAP1) NA 0 NA 0.487351011037079 179 0.107516627766941 1 NA NA -5.76520523832629 LTS-014 chr8 132916302 132916459 158 * EFR3A 0.416 1 NA 1.10621141409665 3 0.508158767840656 3 3 0 -5.76441747572821 LTS-014 chr8 132916460 135614972 2698513 * c(HHLA1, NDRG1, TMEM71, EFR3A, LRRC6, KCNQ3, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, OC90, WISP1, HPYR1) 0.287348153597372 47 0.122323958349577 1.22489051225101 1816 0.368436279865856 3 2 1 -6.88430161328984 LTS-014 chr8 135614973 135622900 7928 * ZFAT NA 0 NA 1.32447208711823 15 0.157396436094462 3 NA NA -5.76469049317768 LTS-014 chr8 135622901 135649645 26745 * ZFAT NA 0 NA 0.582 1 NA NA NA NA NA LTS-014 chr8 135649646 135649848 203 * ZFAT 0.121 1 NA 0.43468215200475 5 0.195558686843617 1 1 0 -5.76445504554862 LTS-014 chr8 135649849 146103871 10454023 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, KHDRBS3, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, LINC01591, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, NA NA NA NA NA NA NA NA NA LTS-014 TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, C8orf82, LRRC24, TONSL, CYHR1, FAM135B, VPS28, HGH1, KCNK9, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.0938315897319432 142 0.0410393080194709 0.5188288035107 8596 0.136717551631135 1 1 0 -7.69889190844675 LTS-014 NA NA NA NA LTS-014 chr8 146103872 146280802 176931 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF16) 0.0846263303775307 11 0.049996908995366 0.4579149908663 408 0.117231169314409 1 1 0 -6.81769764680701 LTS-014 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.349712998820918 3 0.00808290376865474 1 NA NA -5.86867414652361 LTS-014 chr9 14732 214719 199988 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.073 1 NA 0.425267900663787 44 0.153337078078794 1 1 0 -5.86410717057846 LTS-014 chr9 214720 8331723 8117004 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.0952604315645672 73 0.0585567183968363 0.469032252458667 3949 0.161056429019792 1 1 0 -7.06397915544623 LTS-014 chr9 8331724 8338842 7119 * PTPRD NA 0 NA 0.654 1 NA NA NA NA NA LTS-014 chr9 8338843 14398521 6059679 * c(LINC00583, LURAP1L, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.0855278926447135 5 0.0486744286047612 0.522699385331703 846 0.139743902060243 1 1 0 -7.4849430568463 LTS-014 chr9 14398522 25678639 11280118 * c(CDKN2B-AS1, C9orf92, IZUMO3, MIR3152, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, ELAVL2, CCDC171, SLC24A2, TUSC1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MIR31, MLLT3, LINC01239, MTAP, NFIB, CDKN2A-AS1, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, NA NA NA NA NA NA NA NA NA LTS-014 KLHL9, MIR491, RPS6, DMRTA1, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.10921528270608 79 0.0514957292072098 0.469238288024005 3977 0.153830007553299 1 1 0 -7.23349151288129 LTS-014 NA NA NA NA LTS-014 chr9 25678640 26116931 438292 * c(LOC100506422, TUSC1) NA 0 NA 0.481341705747556 27 0.161006768451452 1 NA NA -5.76736823197809 LTS-014 chr9 26840681 26841796 1116 * CAAP1 0.068 1 NA 0.737021414601687 23 0.232538525857341 2 2 0 -5.76481019235163 LTS-014 chr9 26841797 33045147 6203351 * c(MIR876, MIR873, TOPORS-AS1, TOPORS, TAF1L, LINC00032, LINGO2, C9orf72, DDX58, DNAJA1, LINC01242, TMEM215, NDUFB6, ACO1, EQTN, APTX, SMU1, IFNK, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.0502943440000492 29 0.0283730427809611 0.859099002678628 1777 0.235476760511542 2 2 0 -6.79685461057595 LTS-014 chr9 33045148 33045161 14 * SMU1 0.055 1 NA 0.072 1 NA NA NA NA NA LTS-014 chr9 33045162 33391611 346450 * c(B4GALT1, SPINK4, AQP7, NFX1, CHMP5, SMU1, BAG1) 0.267809197969885 9 0.150439171908265 0.856650594124897 521 0.229252950624089 2 1 1 -7.38247585162295 LTS-014 chr9 33391612 33447424 55813 * c(AQP3, AQP7) 0.026 1 NA 1.05443569230003 47 0.215011001590175 2 2 0 -5.78735449269843 LTS-014 chr9 33447425 33674677 227253 * c(PTENP1, ANXA2P2, AQP3, SUGT1P1, ANKRD18B, NOL6) 0.0429842462629159 14 0.0167635462691068 0.890015087149571 326 0.334213841690238 3 3 0 -6.93678583967394 LTS-014 chr9 33674678 33794894 120217 * c(PTENP1, PRSS3) 0.331 1 NA 0.801935090141606 41 0.167263283770112 2 2 0 -5.78779172758969 LTS-014 chr9 33794895 33799218 4324 * PRSS3 0.268400098088986 9 0.0455549119195724 1.14311307946093 29 0.376595678969793 4 3 1 -6.73985699828612 LTS-014 chr9 33799219 33817617 18399 * c(UBE2R2, PRSS3) 0 1 NA 0.933261039709022 7 0.180068902156395 2 2 0 -5.76548673607261 LTS-014 chr9 33817618 34369774 552157 * c(SNORD121A, SNORD121B, DCAF12, NUDT2, KIF24, UBAP1, UBE2R2, UBAP2, KIAA1161) 0.0426214870224999 21 0.0209203705694212 0.879910386757509 690 0.283047740066679 2 2 0 -6.93781945196547 LTS-014 chr9 34369775 35404208 1034434 * c(SIGMAR1, UNC13B, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, C9orf131, FAM219A, FANCG, PHF24, DNAJB5, GALT, FAM205A, DNAI1, STOML2, IL11RA, ENHO, FAM205BP, CNTFR-AS1, KIAA1161, CCL19, CCL21, VCP, FAM214B, C9orf24, PIGO) 0.0450281497830737 34 0.0139780831757849 0.960335096238787 1990 0.311555079007844 2 2 0 -7.07252418301667 LTS-014 chr9 35404209 43861081 8456873 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, ALDH1B1, FRMPD1, ANKRD18A, ZNF658, SPAG8, FBXO10, SIT1, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, AQP7P3, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, NA, LOC642929, LINC01189, POLR1E, SHB, HRCT1, NA, FGF7P3, MSMP, TESK1, NA NA NA NA NA NA NA NA NA LTS-014 TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, CA9, DCAF10, CNTNAP3, ZCCHC7, RECK, HINT2, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.0571153462633714 59 0.0516669808880423 0.883735070804339 3920 0.361237268306972 2 2 0 -6.7340983187412 LTS-014 NA NA NA NA LTS-014 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.877294306902118 8 0.321389283313199 2 NA NA -5.76446749846972 LTS-014 chr9 65602571 66457127 854557 * LOC286297 0.42 1 NA 0.569213651598443 3 0.314161317372673 1 1 0 -5.87997677855326 LTS-014 chr9 66457128 69002317 2545190 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.345523683357451 25 0.080499213246673 0.818391518909811 66 0.284163346848793 2 1 1 -7.47005088451772 LTS-014 chr9 69002318 71650692 2648375 * c(LOC100133920, FAM122A, TMEM252, FXN, FOXD4L3, LOC440896, PGM5, PRKACG, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.059 1 NA 0.855769167884783 325 0.211040589120696 2 2 0 -5.79729765359671 LTS-014 chr9 71650693 95030614 23379922 * c(LOC100128076, UNQ6494, LOC100129316, VPS13A-AS1, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, BANCR, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, CTSL, CTSLP8, NXNL2, RASEF, LINC00475, PRUNE2, DAPK1, S1PR3, ALDH1A1, SMC5, VPS13A, AGTPBP1, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, NA NA NA NA NA NA NA NA NA LTS-014 MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, IARS, LINC01501, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, MIR204, MIR7-1, IDNK, LOC440173, SPATA31C1, FOXB2, NFIL3, NTRK2, ROR2, LOC494127, C9orf135-AS1, PCA3, ABHD17B, PCSK5, GOLM1, SHC3, DIRAS2, AUH, NMRK1, C9orf40, RFK, KIF27, NAA35, RORB, SLC28A3, SPATA31C2, RPSAP9, SYK, KLF9, TLE1, TLE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14) 0.0559703617498878 171 0.0278220845130789 0.856366205030067 9743 0.251354043275392 2 2 0 -6.92398972807586 LTS-014 NA NA NA NA LTS-014 chr9 95030615 95032219 1605 * IARS NA 0 NA 0.423 1 NA NA NA NA NA LTS-014 chr9 95032220 95298435 266216 * c(SNORA84, MIR4670, ECM2, IARS, CENPP, OMD, OGN, ASPN, NOL8) 0.112195240785708 9 0.0550454357780915 0.470636197036264 554 0.137604971986924 1 1 0 -6.77971454169676 LTS-014 chr9 95298436 95362541 64106 * c(ECM2, CENPP) NA 0 NA 0.894 1 NA NA NA NA NA LTS-014 chr9 95362542 116224420 20861879 * c(LOC100128361, FAM225B, LINC00476, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3134, CCDC180, LOC100499484, LOC100507346, MSANTD3-TMEFF1, MIR4668, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, SLC35D2, AKAP2, PALM2, WDR31, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CTSV, CYLC2, MIRLET7DHG, FAM120AOS, ZNF483, C9orf84, KIAA1958, NA NA NA NA NA NA NA NA NA LTS-014 TSTD2, ZNF782, LOC158434, LOC158435, ZNF883, ZNF169, ABCA1, LPAR1, AAED1, ZNF367, ANKS6, SUSD3, ALAD, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, FAM120A, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, NIPSNAP3A, OR2K2, INVS, GNG10, FAM225A, LOC286359, OR13C9, OR13D1, NA, HSD17B3, GAS2L1P2, MURC, ERCC6L2, OR13C2, CENPP, C9orf152, SNX30, MIRLET7A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MIRLET7D, MIRLET7F1, MIR23B, MIR32, LOC441454, LOC441455, NUTM2G, STX17-AS1, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NINJ1, TRMO, PHF2, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, STX17, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, SUSD1, IPPK, WNK2, LRRC37A5P, TAL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TGFBR1, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, SVEP1, NR4A3, HDHD3, ZNF484, FSD1L, HSDL2, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, PTBP3) 0.051853722469786 311 0.0335308288250197 0.872073390024105 14715 0.916874141528211 2 2 0 -6.74048452622082 LTS-014 NA NA NA NA LTS-014 chr9 116224421 117074810 850390 * c(KIF12, ZNF618, AMBP, RGS3, MIR455, COL27A1) 0.0596588855238197 22 0.0133751239020033 0.973708301576995 857 0.288925450110483 2 2 0 -6.86223072749995 LTS-014 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.413 1 NA NA NA NA NA LTS-014 chr9 117085363 117092754 7392 * c(ORM1, ORM2) 0.164830132374837 5 0.102845515215784 0.532403308771899 77 0.399715561889891 6 5 1 -6.80996812394421 LTS-014 chr9 117092755 123342539 6249785 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.0539453115241489 38 0.0279444302259742 0.918799045830624 1882 0.281816066633227 2 2 0 -6.81089386563894 LTS-014 chr9 123342540 124047795 705256 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, GSN, RAB14, PSMD5, TRAF1, C5) 0.0665983730309163 35 0.0714061998579343 0.814097934551896 1188 0.229868209769874 2 2 0 -6.79995091440574 LTS-014 chr9 124047796 124048285 490 * GSN NA 0 NA 1.027 1 NA NA NA NA NA LTS-014 chr9 124048286 127228596 3180311 * c(LOC100129034, MIR4478, ZBTB6, NEK6, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, STOM, RABGAP1, MORN5, OR1L4, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GPR21, CRB2, GSN, ADGRD2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, NDUFA8, PDCL, RC3H2, STRBP, PSMB7, PTGS1, ZBTB26, DENND1A, SNORD90, MIR601, MIR600HG, MRRF, RBM18, LHX2) 0.0518212263747124 76 0.0252642455906199 0.906931638008293 2928 0.331919788212996 2 2 0 -6.75602556053154 LTS-014 chr9 127228597 127238521 9925 * ADGRD2 0 1 NA 1.04325434852947 37 0.680662934226648 2 2 0 -5.76477136290433 LTS-014 chr9 127238522 127533393 294872 * c(MIR181A2HG, NR5A1, NR6A1, ADGRD2, MIR181A2, MIR181B2) 0.0335965865393766 2 0.0410121933088198 0.912245963303537 254 0.349967950110271 2 2 0 -6.89455393687207 LTS-014 chr9 127533394 128728582 1195189 * c(RABEPK, RPL35, OLFML2A, GAPVD1, NR6A1, GOLGA1, SCAI, HSPA5, WDR38, PBX3, PPP6C, MAPKAP1, ARPC5L) 0.0177782252184918 7 0.0181081407633352 1.22224298291338 1245 0.310043475976885 3 3 0 -7.42121153772093 LTS-014 chr9 128728583 135804376 7075794 * c(LOC100272217, SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, CDK9, LAMC3, ZER1, POMT1, USP20, SLC27A4, SPACA9, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, AK8, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, ABL1, PHYHD1, CIZ1, SNORA65, SNORD62A, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA2, CFAP157, NA NA NA NA NA NA NA NA NA LTS-014 FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, ST6GALNAC6, QRFP, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN2, FAM102A, LMX1B, ZBTB34, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, BARHL1, SH3GLB2, DOLPP1, GPR107, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, TSC1, TTF1, ZNF79, C9orf16, PTGES2, NUP214, URM1, AIF1L, UCK1, GARNL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C4, MED27, PTGES, RALGPS1) 0.0367465348320124 167 0.0330620191003338 1.32267860734944 10610 0.638174961068203 3 3 0 -6.74819045962087 LTS-014 NA NA NA NA LTS-014 chr9 135804377 135820982 16606 * TSC1 NA 0 NA 1.965 1 NA NA NA NA NA LTS-014 chr9 135820983 139964714 4143732 * c(LOC100128593, LINC01502, CCDC183-AS1, RNU6ATAC, MIR4292, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, UBAC1, OLFM1, AGPAT2, CEL, CELP, SDCCAG3, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, DBH, STKLD1, QSOX2, SARDH, ABCA2, FCN1, FCN2, PMPCA, NA NA NA NA NA NA NA NA NA LTS-014 FUT7, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, LCN12, C9orf142, PHPT1, OBP2B, OBP2A, GLT6D1, LCN15, C9orf172, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, REXO4, PTGDS, KCNT1, RALGDS, RPL7A, RXRA, CARD9, FAM163B, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TRAF2, DNLZ, C8G, VAV2, BRD3, LHX3, GFI1B, CCDC183, SNHG7, TMEM141, EDF1, SAPCD2, C9orf69, CLIC3, GTF3C5, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.0406330192854813 174 0.0393928039594432 1.39612167583293 7228 1.28672498192749 3 3 0 -6.74785791673754 LTS-014 NA NA NA NA LTS-014 chr9 139964715 139996619 31905 * c(MAN1B1-AS1, MAN1B1, SAPCD2, UAP1L1) 0.445 1 NA 1.29409345057154 156 0.211277174582553 3 3 0 -5.76450676638156 LTS-014 chr9 139996620 140064315 67696 * c(MIR3621, MAN1B1, GRIN1, DPP7, LRRC26) 0.259661482094142 9 0.1180275391593 1.35235206764286 331 0.321756908939124 4 3 1 -6.7512277965043 LTS-014 chr9 140064316 140064376 61 * LRRC26 0.038 1 NA 1.24202168257531 3 0.831940102010555 3 3 0 -5.7644101699717 LTS-014 chr9 140064377 141008876 944500 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, ANAPC2, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.051470298480608 34 0.0719182046772086 1.35127007871207 1916 0.349258044835234 3 3 0 -6.76936265276899 LTS-014 chr9 141008877 141071759 62883 * c(TUBBP5, CACNA1B) NA 0 NA 1.27509703880431 101 0.292805501287388 3 NA NA -5.76441015656581 LTS-014 chr10 94832 95229 398 * TUBB8 0.093 1 NA 0.57675378800161 5 0.271380176136725 1 1 0 -5.76449686715083 LTS-014 chr10 95230 875662 780433 * c(MIR5699, ZMYND11, DIP2C, LARP4B, PRR26) 0.277499093712006 11 0.217215937804673 0.929298091819139 620 0.229821439040892 2 1 1 -7.04856968917437 LTS-014 chr10 875663 1041981 166319 * c(LARP4B, GTPBP4) 0.457 1 NA 0.889774876418008 71 0.164856155822814 2 2 0 -5.7646768733803 LTS-014 chr10 1041982 16632729 15590748 * c(PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, NA NA NA NA NA NA NA NA NA LTS-014 ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, PTER, NMT2, USP6NL) 0.428585029231956 211 0.0946489409694084 0.909294019139396 7247 0.27977222632673 2 1 1 -6.84139523322906 LTS-014 NA NA NA NA LTS-014 chr10 16632730 17813397 1180668 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, RSU1, TMEM236, VIM, STAM, CUBN, HACD1) 0.426622059752596 31 0.0869283600727992 0.831065017175766 912 0.242322772979006 2 1 1 -6.77871101122442 LTS-014 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.113 1 NA NA NA NA NA LTS-014 chr10 17842448 17898302 55855 * c(MRC1, NA, TMEM236) 0.5 1 NA 0.451749037298424 39 0.336894578191924 1 1 0 -5.7663244189849 LTS-014 chr10 17898303 17898391 89 * c(MRC1, NA, TMEM236) NA 0 NA 0.949 1 NA NA NA NA NA LTS-014 chr10 17898392 18196475 298084 * c(MRC1, NA, TMEM236) 0.362 1 NA 0.749658463702486 109 0.460783255772759 2 2 0 -5.78666056144363 LTS-014 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.361 1 NA NA NA NA NA LTS-014 chr10 18198201 24873184 6674984 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, KIAA1217, ARHGAP21, DNAJC1, BMI1, MIR603, CACNB2, MLLT10, PLXDC2, SPAG6) 0.42626358213712 78 0.0952971420770072 0.92914439715284 2558 0.290241234025414 2 1 1 -6.86079057864309 LTS-014 chr10 24873185 24873198 14 * ARHGAP21 NA 0 NA 0.77 1 NA NA NA NA NA LTS-014 chr10 24873199 29580942 4707744 * c(ABI1, GPR158-AS1, LINC00837, MIR5586, YME1L1, MPP7, ENKUR, WAC-AS1, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, PTCHD3, LINC00202-1, LRRC37A6P, WAC, MYO3A, APBB1IP, ARMC4, PRTFDC1, GPR158, ARHGAP21, LINC00264, LINC00202-2, THNSL1, LYZL1, MASTL, ACBD5) 0.434578772714596 37 0.0859597817824364 0.848280143572162 2607 0.235748280483493 2 1 1 -6.81054602236538 LTS-014 chr10 29580943 29581386 444 * LYZL1 NA 0 NA 1.294 1 NA NA NA NA NA LTS-014 chr10 29581387 31146615 1565229 * c(MIR938, LYZL2, MAP3K8, ZNF438, PTCHD3P1, MTPAP, KIAA1462, SVIL, MIR604, LYZL1) 0.375543991549936 23 0.0521782063450949 1.10865500803096 762 0.657353120740988 3 2 1 -6.96863385293187 LTS-014 chr10 31146616 31146667 52 * ZNF438 NA 0 NA 0.862 1 NA NA NA NA NA LTS-014 chr10 31146668 38740382 7593715 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, SEPT7P9, ITGB1, KIF5B, LINC00999, PARD3, ZNF248, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, NRP1, ANKRD30A, ARHGAP12) 0.409623393400673 67 0.128982499978752 0.829023044077685 2420 0.242105578733851 2 1 1 -7.0387518482621 LTS-014 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 0.526 1 NA NA NA NA NA LTS-014 chr10 42379879 42947161 567283 * LOC441666 0.39222316503821 7 0.0160104132780304 1.08674762782019 48 0.486290408811574 5 3 2 -7.38659383834921 LTS-014 chr10 42947162 42949600 2439 * character(0) NA 0 NA 1.383 1 NA NA NA NA NA LTS-014 chr10 42949601 46934817 3985217 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.330589210005004 56 0.0804078806630748 1.25179241730853 1765 0.339189133223972 3 2 1 -6.76028515072311 LTS-014 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 5.165 1 NA NA NA NA NA LTS-014 chr10 46952744 47756145 803402 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.426740711348237 34 0.0739760282991953 1.4829515085785 296 0.522644860630585 4 2 2 -6.76108310500102 LTS-014 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.911 1 NA NA NA NA NA LTS-014 chr10 47903105 48370792 467688 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) 0.389673325407304 3 0.0645006459915971 0.879205859828687 63 0.438795412148393 2 1 1 -6.98887863337929 LTS-014 chr10 48370793 50009599 1638807 * c(ZNF488, FRMPD2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.332933155251299 24 0.0826228992365971 1.37723154485471 863 0.416726744990627 3 2 1 -6.78034071428205 LTS-014 chr10 50009600 50010759 1160 * c(NA, WDFY4) NA 0 NA 1.252 1 NA NA NA NA NA LTS-014 chr10 50010760 60155120 10144361 * c(TIMM23, MIR4294, MTRNR2L5, MIR3924, FAM170B-AS1, PRKG1-AS1, NA, CHAT, ZWINT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, DKK1, CSTF2T, IPMK, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, LRRC18, NA, OGDHL, CISD1, PRKG1, ASAH2, WDFY4, DRGX, PCDH15, AGAP7P, ASAH2B, SLC18A3, MIR605, TFAM, NA, PARGP1, UBE2D1, NCOA4, PARG) 0.37066054059609 59 0.0556149984605747 1.26469378399534 3019 0.314980603686681 3 2 1 -6.85796450168103 LTS-014 chr10 60155121 60155791 671 * TFAM 0.255 1 NA 1.45655037347526 16 0.382397611568552 3 3 0 -5.76445896258982 LTS-014 chr10 60155792 63167756 3011965 * c(MRLN, TMEM26, SLC16A9, FAM13C, LINC01553, ANK3, TFAM, FAM133CP, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.335155480661109 28 0.105967169469091 1.28793689328812 1405 0.33086030025851 3 2 1 -6.74039321727881 LTS-014 chr10 63167757 71124696 7956940 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.328663037166361 61 0.107558648380918 1.18674311684155 3664 0.314833458436634 3 2 1 -6.98476974924859 LTS-014 chr10 71124697 71128277 3581 * HK1 NA 0 NA 1.775 1 NA NA NA NA NA LTS-014 chr10 71128278 73848034 2719757 * c(ANAPC16, COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1, CHST3, SPOCK2) 0.329623064508355 115 0.0694113826815645 1.36124263208341 3141 0.370656126303343 3 2 1 -6.81465630088304 LTS-014 chr10 73848035 73848186 152 * c(ANAPC16, SPOCK2) NA 0 NA 1.146 1 NA NA NA NA NA LTS-014 chr10 73848187 76994457 3146271 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, SEC24C, SPOCK2) 0.268138611210766 34 0.132743493685621 1.22957992893696 3251 0.29226225405742 3 2 1 -6.95853823278614 LTS-014 chr10 76994458 76994651 194 * COMTD1 NA 0 NA 1.805 1 NA NA NA NA NA LTS-014 chr10 76994652 89472873 12478222 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, GRID1-AS1, MIR4678, PPIF, NRG3, ADIRF, POLR3A, LDB3, COMTD1, AGAP11, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, ZNF503-AS1, LRIT1, GHITM, GLUD1, ZMIZ1-AS1, GRID1, ANXA11, LRIT2, KCNMA1, SH2D4B, C10orf99, LINC00595, MAT1A, LINC00857, LINC00863, MIR346, CCSER2, FAM35A, ZMIZ1, RGR, RPS24, LOC642361, FAM25A, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NA NA NA NA NA NA NA NA NA LTS-014 NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, MMRN2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, PAPSS2, CDHR1, DLG5, OPN4, MINPP1) 0.317321961597309 140 0.0943768767297046 1.33092727788672 4393 0.419874204781516 3 2 1 -6.86356012370299 LTS-014 NA NA NA NA LTS-014 chr10 89472874 98718862 9245989 * c(C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, FAS-AS1, MIR3157, MARK2P9, MIR4679-1, MIR4679-2, LINC00502, RPP30, SORBS1, PIK3AP1, FRA10AC1, ANKRD22, NUDT9P1, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, DNTT, CPEB3, TBC1D12, IFIT5, TCTN3, MYOF, PIPSL, ANKRD1, FLJ37201, BLNK, HELLS, HHEX, HTR7, FFAR4, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, NA NA NA NA NA NA NA NA NA LTS-014 CC2D2B, LIPA, MIR107, IFIT1B, PLCE1, PDE6C, PANK1, EXOC6, CCNJ, MARCH5, PPP1R3C, CEP55, RNLS, TM9SF3, PTEN, STAMBPL1, ALDH18A1, ACTA2, RBP4, NOC3L, LIPK, LIPN, LINC00865, TLL2, ENTPD1-AS1, TNKS2, PCGF5, LCOR, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, PDLIM1, LGI1, OPALIN, ENTPD1, KIF20B, ZNF518A) 0.324423619799902 124 0.110703724927504 1.2128976353461 7686 0.339220911911078 3 2 1 -6.87173164907707 LTS-014 NA NA NA NA LTS-014 chr10 98718863 104574757 5855895 * c(TLX1NB, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, MORN4, ZFYVE27, SFXN2, ABCC2, COX15, CPN1, NKX2-3, FGF8, PPRC1, RRP12, DNMBP, FRAT2, DPCD, SEC31B, C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, KCNIP2, TLX1, HPS1, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, NA NA NA NA NA NA NA NA NA LTS-014 EXOSC1, CUTC, SUFU, PGAM1, PITX3, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, ENTPD7, MIR146B, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, FBXW4, SLIT1, SNORA12, MIR608, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, UBTD1, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NOLC1) 0.323984569876041 106 0.0973653621501544 1.3097454362617 7851 0.32133116308049 3 2 1 -6.78675523103123 LTS-014 NA NA NA NA LTS-014 chr10 104574758 117823764 13249007 * c(MIR936, MIR1307, MIR2110, MIR4295, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4680, MIR4483, MIR4482, SMNDC1, SORCS1, BORCS7, GSTO2, SFR1, CALHM3, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CYP17A1, CFAP58, DUSP5, NT5C2, PDCD11, SORCS3, CALHM1, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, CALHM2, ACSL5, CNNM2, WBP1L, CCDC186, TDRD1, AS3MT, GPAM, FAM160B1, NA NA NA NA NA NA NA NA NA LTS-014 ZDHHC6, RPL13AP6, TAF5, MIR609, TCF7L2, TECTB, RPEL1, XPNPEP1, PLEKHS1, OBFC1, CFAP43, SHOC2, CASP7, PCGF6, AFAP1L2, USMG5, ITPRIP, INA, SMC3, NEURL1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.314637398358693 72 0.114184377160277 1.23166631810554 6971 0.347083423211625 3 2 1 -6.85356838580522 LTS-014 NA NA NA NA LTS-014 chr10 117823765 117823798 34 * GFRA1 NA 0 NA 1.308 1 NA NA NA NA NA LTS-014 chr10 117823799 119308575 1484777 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.320828528242241 15 0.106191874857327 1.36954643990278 1281 0.351383244675192 3 2 1 -6.80189823919659 LTS-014 chr10 119308576 121679137 2370562 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.333169455340353 16 0.103851175567091 1.19647339890666 1576 1.40170787496395 3 2 1 -6.74428703568182 LTS-014 chr10 121679138 121680378 1241 * SEC23IP NA 0 NA 1.283 1 NA NA NA NA NA LTS-014 chr10 121680379 126676686 4996308 * c(MIR3941, FAM24B-CUZD1, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, CPXM2, CTBP2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.332573816693488 72 0.0922820699712824 1.30186465996318 3053 0.365156299593272 3 2 1 -6.75454373020051 LTS-014 chr10 126676687 126677436 750 * CTBP2 0.071 1 NA 1.03984792516693 7 0.243064953106307 2 2 0 -5.76461567454115 LTS-014 chr10 126677437 126686714 9278 * CTBP2 0.106813422290271 13 0.0373471242843099 1.26186481552676 51 0.613201277770051 10 9 1 -6.7564478031163 LTS-014 chr10 126686715 126686762 48 * CTBP2 0.349 1 NA 1.56035843068869 3 0.496238182059113 4 4 0 -5.7644106388072 LTS-014 chr10 126686763 131265465 4578703 * c(TEX36-AS1, MIR4296, MIR4484, LINC00601, FANK1-AS1, C10orf90, MMP21, CLRN3, CTBP2, DOCK1, EDRF1, LOC283038, TEX36, FLJ37035, FOXI2, MGMT, MKI67, DHX32, BCCIP, PTPRE, NPS, FAM196A, UROS, ADAM12, FANK1) 0.325631294109989 72 0.108191332539255 1.26368248940977 2055 0.496380295855611 3 2 1 -6.75390669980264 LTS-014 chr10 131265466 131265476 11 * MGMT NA 0 NA 1.618 1 NA NA NA NA NA LTS-014 chr10 131265477 134693137 3427661 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.304786935224261 51 0.0887579568374621 1.38508806424054 1358 0.419353114717125 3 2 1 -6.93568887037755 LTS-014 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.647 1 NA NA NA NA NA LTS-014 chr10 134694406 134756359 61954 * CFAP46 0.408061391548973 8 0.0635475075379492 0.749993300476755 173 0.351471076758943 2 1 1 -6.82985704093333 LTS-014 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.066 1 NA NA NA NA NA LTS-014 chr10 134884462 135381622 497161 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.34877900357648 61 0.0658539948209657 1.34079922798953 1382 0.341767085797774 3 2 1 -6.74108106084601 LTS-014 chr10 135381623 135473048 91426 * c(SPRNP1, FRG2B, SYCE1) 0.246345187150672 2 0.0707106781186548 0.664632598514726 38 0.368765536114601 4 3 1 -7.0958672160559 LTS-014 chr10 135473049 135473116 68 * character(0) NA 0 NA 0.426 1 NA NA NA NA NA LTS-014 chr11 193025 193096 72 * SCGB1C1 0.339 1 NA 0.527 1 NA NA NA NA NA LTS-014 chr11 193097 1013987 820891 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.0693031323694417 114 0.0549071848145879 0.785327044932504 2959 0.212920257937997 2 2 0 -6.91673621031465 LTS-014 chr11 1013988 1016869 2882 * MUC6 0.385 1 NA 0.6866346303354 23 0.0975128450036787 2 2 0 -5.77580884956735 LTS-014 chr11 1016870 1018483 1614 * MUC6 0.293859387588961 37 0.100445733335694 0.917722401259115 72 0.384006907449203 7 5 2 -6.741465052844 LTS-014 chr11 1018484 1025332 6849 * MUC6 NA 0 NA 0.725945962605001 50 0.191861673172765 2 NA NA -5.76865012628806 LTS-014 chr11 1025333 1027174 1842 * MUC6 0.051 1 NA 0.865495234579631 19 0.194017995186375 2 2 0 -5.7644208881601 LTS-014 chr11 1027175 1213023 185849 * c(MUC2, MUC6, MUC5B) 0.169967409660664 17 0.11926888184464 0.877234041683187 413 0.291408475326698 2 2 0 -7.2439667102979 LTS-014 chr11 1213024 1213174 151 * MUC5B 0.468 1 NA 0.986519637028551 3 0.196917072224156 2 2 0 -5.76443911319612 LTS-014 chr11 1213175 1213566 392 * MUC5B 0.405185506271763 17 0.0660537325836723 0.950151101154116 27 0.215378259979495 5 3 2 -6.74076191321408 LTS-014 chr11 1213567 1215698 2132 * MUC5B 0.081 1 NA 0.856990909041662 25 0.236272145346561 2 2 0 -5.76442942040193 LTS-014 chr11 1215699 1253976 38278 * MUC5B 0.110654935744849 9 0.119813860262956 0.961107227709908 149 0.386003791185216 1 1 0 -6.80785849177154 LTS-014 chr11 1253977 1253980 4 * MUC5B 0.353 1 NA 0.855 1 NA NA NA NA NA LTS-014 chr11 1253981 1260193 6213 * MUC5B 0.282163938431595 11 0.0495637330753409 0.978521906985957 55 0.303240145525928 7 5 2 -6.80735812598971 LTS-014 chr11 1260194 1267325 7132 * MUC5B 0.057 1 NA 0.856521023646141 73 0.263280611449641 2 2 0 -5.76446409214503 LTS-014 chr11 1267326 2950058 1682733 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.0696787613212606 83 0.0441487547701176 0.869382286024702 2058 0.26271783739026 2 2 0 -6.80129814677452 LTS-014 chr11 2950059 2950075 17 * PHLDA2 NA 0 NA 0.59 1 NA NA NA NA NA LTS-014 chr11 2950076 4968130 2018055 * c(LOC100506082, MIR4687, OR7E12P, OSBPL5, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, MRGPRG-AS1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NAP1L4, NUP98, TRIM68, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, OR51G1, OR51G2, OR51E2, CARS) 0.0574682537211935 67 0.0258887785675839 0.77873936784801 2121 0.276807803727308 2 2 0 -6.97467696407882 LTS-014 chr11 4968131 4976907 8777 * c(OR51A4, OR51A2) NA 0 NA 0.129405108717131 40 0.20036082195469 0 NA NA -5.77525318331754 LTS-014 chr11 4976908 5776889 799982 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.075006400717124 54 0.0594104038586904 0.774228410262542 1200 0.41986741636894 2 2 0 -6.84601774487658 LTS-014 chr11 5776890 5776988 99 * c(TRIM22, OR52N4, TRIM5) NA 0 NA 0.714 1 NA NA NA NA NA LTS-014 chr11 5776989 5809500 32512 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.064 1 NA 0.181652628238066 38 0.189561896645999 0 0 0 -5.97052422126013 LTS-014 chr11 5809501 5809505 5 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.763 1 NA NA NA NA NA LTS-014 chr11 5809506 17394288 11584783 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, NA NA NA NA NA NA NA NA NA LTS-014 LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.0596009179180329 206 0.0311141037100592 0.764225869032846 10035 0.432338764906763 2 2 0 -7.42852386417109 LTS-014 NA NA NA NA LTS-014 chr11 17394289 17803843 409555 * c(USH1C, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8) 0.0607843355459972 26 0.0324701993550062 0.85685061843588 1090 0.458308596068469 2 2 0 -6.75265279662328 LTS-014 chr11 17803844 18720388 916545 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, KCNC1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.0541719214016523 35 0.0195881116406625 0.72112945219358 1277 0.245212330402429 2 2 0 -7.08475454040647 LTS-014 chr11 18720389 32456571 13736183 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, ELP4, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, DKFZp686K1684, NELL1, BDNF-AS, PAX6, ZDHHC13, LIN7C, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, NA NA NA NA NA NA NA NA NA LTS-014 CCDC34, SLC6A5) 0.0610801276434126 78 0.0292426435387125 0.785438544125939 4631 0.250044858270466 2 2 0 -8.15587140055101 LTS-014 NA NA NA NA LTS-014 chr11 32456572 32456576 5 * WT1 NA 0 NA 0.715 1 NA NA NA NA NA LTS-014 chr11 32456577 33719850 1263274 * c(C11orf91, HIPK3, EIF3M, CSTF3, KIAA1549L, LINC00294, CSTF3-AS1, CCDC73, WT1-AS, TCP11L1, WT1, PRRG4, QSER1, DEPDC7) 0.05931967815014 25 0.0169266062753288 0.743805141244676 1363 0.254391359107938 2 2 0 -7.09399241774719 LTS-014 chr11 33719851 33721175 1325 * C11orf91 0.056 1 NA 0.671102404944548 11 0.239857609275321 2 2 0 -5.76544300610705 LTS-014 chr11 33721176 44080121 10358946 * c(C11orf91, MIR670, LOC100507205, ALKBH3-AS1, MIR3973, MIR1343, C11orf74, LDLRAD3, ELF5, ALKBH3, FJX1, ABTB2, PAMR1, FBXO3, EHF, COMMD9, C11orf96, ACCSL, HNRNPKP3, LMO2, MIR129-2, CAPRIN1, APIP, HSD17B12, TRIM44, NAT10, TTC17, LRRC4C, RAG1, RAG2, SLC1A2, TRAF6, SEC14L1P1, PRR5L, PDHX, CAT, API5, CD44, CD59) 0.0598030913266381 86 0.0345846589112997 0.736071882292722 3188 0.278002616317787 2 2 0 -8.63711758933972 LTS-014 chr11 44080122 47447583 3367462 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, ACCSL, ARHGAP1, LRP4, MDK, MYBPC3, PHF21A, ACP2, SLC35C1, AMBRA1, PRDM11, PSMC3, SYT13, ALX4, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.0619890033069597 73 0.0253915532042609 0.815772303485077 3867 0.243178932873787 2 2 0 -6.97998379312245 LTS-014 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.693 1 NA NA NA NA NA LTS-014 chr11 47447717 48285782 838066 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.106772767772755 9 0.0470534565975527 0.710677330268966 1147 0.184629418761556 2 2 0 -8.00306662248837 LTS-014 chr11 48285783 48285856 74 * OR4X1 0.047 1 NA 3.567 1 NA NA NA NA NA LTS-014 chr11 48285857 48328644 42788 * c(OR4S1, OR4X1) 0.0708599208030238 3 0.00723417813807023 1.26404444300454 35 4.60436823137377 16 15 1 -6.76725109026826 LTS-014 chr11 48328645 48346423 17779 * OR4S1 0.381 1 NA 0.781870425225806 5 0.306687626095348 2 2 0 -5.76606338957952 LTS-014 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.320789227463734 95 0.0659513428162075 1.20874356405623 171 0.648333480571213 6 4 2 -6.8103228769288 LTS-014 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.764 1 NA NA NA NA NA LTS-014 chr11 48387986 48388717 732 * character(0) 0.361802436519399 6 0.0308739372286723 1.01784219196935 10 0.55773559048073 14 9 5 -6.74356625460555 LTS-014 chr11 48388718 48453787 65070 * character(0) 0.055 1 NA 0.954255978703022 4 0.414885024233622 2 2 0 -5.76580702642367 LTS-014 chr11 48453788 49974670 1520883 * c(FOLH1, OR4C13, TRIM49B, OR4A47, LOC440040, TRIM64C) 0.0557393697898838 19 0.0260052851128606 0.804460907922127 377 0.584239141641595 2 2 0 -6.75612221875759 LTS-014 chr11 49974671 50003191 28521 * c(OR4C13, OR4C12) 0.066 1 NA 0.745925670183239 12 0.283846149108344 2 2 0 -5.77038578376969 LTS-014 chr11 50003192 51516257 1513066 * c(OR4C46, OR4C12, LOC441601, LOC646813, OR4A5) 0.406652228090866 9 0.110869793501707 0.868617208481874 86 0.298367713757469 2 1 1 -6.76844197429551 LTS-014 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.813399569171113 6 0.190981325439601 2 NA NA -5.76565192816778 LTS-014 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.48 1 NA 0.693862601629151 21 0.444900941355542 2 2 0 -5.77763598374821 LTS-014 chr11 55111585 56143158 1031574 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8U8, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.462316206344901 26 0.0379916590036044 0.90525144356163 752 0.208413423197516 2 1 1 -7.08646480804583 LTS-014 chr11 56143159 56143198 40 * OR8U8 0.267 1 NA 1.769 1 NA NA NA NA NA LTS-014 chr11 56143199 56143592 394 * OR8U8 0.245738296420125 10 0.132260223297357 1.52844885800101 20 0.561400623909803 17 13 4 -6.73618321843217 LTS-014 chr11 56143593 56143690 98 * OR8U8 0.424 1 NA 1.38312496205101 3 0.557688383717406 3 3 0 -5.7644113790169 LTS-014 chr11 56143691 56467881 324191 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.437528084903147 11 0.0698094809919372 0.908358520529201 257 0.280640272824538 2 1 1 -6.73799630648656 LTS-014 chr11 56467882 56467926 45 * c(OR8U8, OR9G9) 0.357 1 NA 1.708 1 NA NA NA NA NA LTS-014 chr11 56467927 56508604 40678 * c(OR8U8, OR9G9) 0.329295057929896 21 0.115744752015146 1.24175739537534 43 0.593270450336543 3 2 1 -6.74471024830964 LTS-014 chr11 56508605 56510623 2019 * OR9G4 0.482 1 NA 0.829952775155715 11 0.360073351113101 2 2 0 -5.76444497104382 LTS-014 chr11 56510624 57417173 906550 * c(PRG3, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, TIMM10, OR9G4, SLC43A3, RTN4RL2, OR5AK2, MIR130A, P2RX3, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.461400707327064 5 0.0765604336455848 0.92899826559921 1096 0.19001984361088 2 1 1 -6.85609445424402 LTS-014 chr11 57417174 57424465 7292 * YPEL4 NA 0 NA 0.881 1 NA NA NA NA NA LTS-014 chr11 57424466 60468857 3044392 * c(MIR3162, TMX2-CTNND1, GLYAT, CLP1, CNTF, CTNND1, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A2, DTX4, MS4A6E, ZDHHC5, GIF, SELENOH, LOC283194, LINC00301, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, NA NA NA NA NA NA NA NA NA LTS-014 STX3, TCN1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, GLYATL1, MS4A1, MS4A3, LPXN) 0.459697507843027 43 0.0383823799090958 0.8632927909758 3018 0.194022396408087 2 1 1 -7.03873363929304 LTS-014 NA NA NA NA LTS-014 chr11 60468858 60470750 1893 * MS4A8 NA 0 NA 1.174 1 NA NA NA NA NA LTS-014 chr11 60470751 61730207 1259457 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, TKFC, DKFZP434K028, PRPF19, MS4A10, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, MS4A8, SYT7, CD5, CD6, FADS2) 0.448366875126245 50 0.0965531766352995 0.947120995999416 3021 0.219103040737442 2 1 1 -6.82705544734102 LTS-014 chr11 61730208 61730306 99 * BEST1 NA 0 NA 0.98 1 NA NA NA NA NA LTS-014 chr11 61730307 63677008 1946702 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, SCGB1D2, SCGB1D1, PLA2G16, CHRM1, SLC22A9, HRASLS5, C11orf84, EEF1G, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, FTH1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, INCENP, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, BEST1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NA NA NA NA NA NA NA NA NA LTS-014 ZBTB3, ASRGL1, INTS5, LGALS12, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.443567328194664 48 0.097689250771577 0.882701685446654 3838 0.221191431253509 2 1 1 -6.74044558568646 LTS-014 NA NA NA NA LTS-014 chr11 63677009 63678722 1714 * c(MARK2, RCOR2) NA 0 NA 1.965 1 NA NA NA NA NA LTS-014 chr11 63678723 73104771 9426049 * c(NAALADL1, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1237, MIR548K, MIR3165, MIR3664, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, STARD10, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, COX8A, CPT1A, CST6, NA NA NA NA NA NA NA NA NA LTS-014 CTSW, GRK2, GPHA2, DHCR7, CTTN, ESRRA, FAU, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, ALDH3B2, FGF3, FGF4, FKBP2, SHANK2, KDM2A, ATG2A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, POLA2, FLRT1, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ANAPC15, PPP1R14B, MYEOV, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, RCOR2, ALG1L9P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, MALAT1, KRTAP5-9, KRTAP5-10, SPDYC, GPR152, DOC2GP, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, KCNK4, PC, GAL, KMT5B, PDE2A, CABP2, TRMT112, PLCB3, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RBM4, CCND1, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, NAA40, TMEM134, MUS81, FOSL1, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, RELT, PPFIA1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.450300990187147 294 0.0636678782489016 0.928985625915151 16568 0.213399860954333 2 1 1 -7.0927489482478 LTS-014 NA NA NA NA LTS-014 chr11 73104772 78369150 5264379 * c(KCNE3, KCTD21-AS1, TPBGL, NDUFC2-KCTD14, MIR4696, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, FAM168A, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, THAP12, EMSY, USP35, PLEKHB1, RAB6A, SNORD15A, RPS3, KCTD14, THRSP, NA NA NA NA NA NA NA NA NA LTS-014 CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, RELT, SERPINH1, INTS4, SPCS2, GAB2) 0.440099963070795 121 0.0974866071185838 0.894642549740067 5893 0.230829908619974 2 1 1 -6.74804221294511 LTS-014 NA NA NA NA LTS-014 chr11 78369151 82444219 4075069 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4) 0.467589969850677 7 0.0260109866896938 1.0102731429553 285 0.242025213926014 2 1 1 -8.33769239741621 LTS-014 chr11 82444220 85989215 3544996 * c(SNORA70E, RAB30-AS1, DLG2, DDIAS, CCDC83, FAM181B, CCDC89, RAB30, ANKRD42, PCF11, SYTL2, PRCP, TMEM126B, CREBZF, CCDC90B, PICALM, TMEM126A, EED) 0.459041962817987 34 0.0414317835920939 0.806264757367423 2041 0.199910653909086 2 1 1 -7.3692567710984 LTS-014 chr11 85989216 89405082 3415867 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, FOLH1B, RAB38, GRM5, NOX4, HIKESHI, CCDC81, TMEM135, TYR, FZD4, OR7E2P, EED) 0.460918609228337 15 0.0364532316158402 0.864037116524961 1195 0.215961036989123 2 1 1 -7.09149424292472 LTS-014 chr11 89405083 89448292 43210 * c(FOLH1B, TRIM77) 0 1 NA 0.923300896397303 69 0.64656762585182 2 2 0 -5.76453857565138 LTS-014 chr11 89448293 93546574 4098282 * c(NAALAD2, MIR1304, MIR4490, SLC36A4, FAT3, TRIM64, DEUP1, CHORDC1, C11orf54, TRIM77, MTNR1B, SMCO4, TRIM49, SCARNA9, TRIM64B, TRIM49C, UBTFL1, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.355404145402558 21 0.180343415790673 0.884294108063909 1620 0.269752313840838 2 1 1 -6.84147399206455 LTS-014 chr11 93546575 93822102 275528 * c(HEPHL1, VSTM5) 0.426 1 NA 0.895244788263565 155 0.199197164927845 2 2 0 -5.76530443640275 LTS-014 chr11 93822103 112089561 18267459 * c(LOC100132078, WTAPP1, MIR1260B, MIR3920, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, JRKL-AS1, LOC101054525, YAP1, GPR83, CARD16, TMEM123, COLCA2, PIH1D2, CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, C11orf65, DDX10, DLAT, FDX1, ENDOD1, EXPH5, SIK2, PANX1, FUT4, ANGPTL5, TIMM8B, GRIA4, GUCY1A2, BIRC2, BIRC3, HSPB2, C11orf53, HEPHL1, IL18, ACAT1, IZUMO1R, KDM4E, C11orf87, NA NA NA NA NA NA NA NA NA LTS-014 COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, ATM, NPAT, CWC15, PGR, CNTN5, POU2AF1, SLC35F2, RAB39A, BTG4, ANKRD49, PPP2R1B, C11orf57, ELMOD1, KDM4D, TEX12, CEP126, ARHGAP20, CARD18, RDX, AASDHPPT, SDHD, MMP27, C11orf97, LOC643733, LOC643923, C11orf1, SLN, TRPC6, DYNC2H1, CCDC82, ALG9, PDGFD, CUL5, CASP1, CASP4, CASP5, BCO2, TMEM133, DCUN1D5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MSANTD4, MAML2, C11orf70, DIXDC1, ZC3H12C, JRKL, MTMR2, ALKBH8, FDXACB1, MMP20, CEP57) 0.433861138148217 231 0.103101871816877 0.855801765033514 10224 0.242470426062146 2 1 1 -6.900696810514 LTS-014 NA NA NA NA LTS-014 chr11 112089562 112097059 7498 * BCO2 NA 0 NA 1.255 1 NA NA NA NA NA LTS-014 chr11 112097060 119534298 7437239 * c(LOC100131626, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, NXPE1, NXPE2, JAML, TTC36, DDX6, DPAGT1, DRD2, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, HTR3A, APOA4, CCDC84, APOC3, PLET1, IL10RA, ARCN1, MCAM, KMT2A, NCAM1, NA NA NA NA NA NA NA NA NA LTS-014 NNMT, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, NXPE4, TTC12, VPS11, TMPRSS4, IFT46, DSCAML1, USP28, PTS, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, CLDN25, RPL23AP64, TAGLN, THY1, UPK2, ZBTB16, RNF26, NLRX1, PDZD3, TMPRSS5, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, UBE4A, C2CD2L) 0.433038849930637 187 0.0917870476297553 0.896637211998817 8264 0.381767251279038 2 1 1 -6.74106827094046 LTS-014 NA NA NA NA LTS-014 chr11 119534299 120178341 644043 * c(OAF, TRIM29, POU2F3, NECTIN1, LOC649133) 0.464652088195594 6 0.0377222304041883 1.04755711009046 385 0.350451459704145 2 1 1 -7.22659962519144 LTS-014 chr11 120178342 120180054 1713 * POU2F3 NA 0 NA 0.707 1 NA NA NA NA NA LTS-014 chr11 120180055 134856661 14676607 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, NA NA NA NA NA NA NA NA NA LTS-014 GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SORL1, SRPRA, ST14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.432347562193341 264 0.101358127872605 0.91240103938161 10093 0.325830438320246 2 1 1 -6.82543454034435 LTS-014 NA NA NA NA LTS-014 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.887 1 NA NA NA NA NA LTS-014 chr12 90923 90953 31 * LOC100288778 0.462 1 NA 0.414 1 NA NA NA NA NA LTS-014 chr12 90954 420141 329188 * c(LOC100288778, IQSEC3, LOC574538, KDM5A, SLC6A12, SLC6A13, FAM138D) 0.466011109497238 12 0.0417614981444958 0.911506096469727 544 0.228040531227311 2 1 1 -7.09631252088943 LTS-014 chr12 420142 420233 92 * KDM5A NA 0 NA 1.35 1 NA NA NA NA NA LTS-014 chr12 420234 1600057 1179824 * c(ERC1, B4GALNT3, NINJ2, RAD52, KDM5A, WNK1, CCDC77) 0.360048655016533 23 0.0662764899683865 1.19583762689951 1003 0.266568104209349 3 2 1 -6.80256116428756 LTS-014 chr12 1600058 1600095 38 * ERC1 NA 0 NA 1.571 1 NA NA NA NA NA LTS-014 chr12 1600096 2702383 1102288 * c(LINC00940, LINC00942, MIR3649, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, ERC1, LRTM2, CACNA1C, ADIPOR2, WNT5B, CACNA2D4) 0.359496847632246 28 0.057352375483017 1.32598220959263 898 0.402869136728119 3 2 1 -6.77522859216334 LTS-014 chr12 2702384 3104028 401645 * c(LOC100507424, CACNA1C-AS1, FKBP4, FOXM1, LOC283440, ITFG2, TEAD4, TULP3, CACNA1C, RHNO1, NRIP2) 0.480992728721994 3 0.0145716619962629 0.943642579297709 797 0.195929171129502 2 1 1 -10.2472648936866 LTS-014 chr12 3104029 3747493 643465 * c(TSPAN9, PRMT8, TEAD4, CRACR2A) 0.344433485205226 17 0.0574320570454393 1.48301743417095 308 0.431066527137706 3 2 1 -6.78038611339502 LTS-014 chr12 3747494 3747498 5 * CRACR2A NA 0 NA 1.09 1 NA NA NA NA NA LTS-014 chr12 3747499 3951658 204160 * c(PARP11, CRACR2A) 0.321406523871027 6 0.159442779704821 1.19813300862041 228 0.335278679968416 3 2 1 -6.75080719835951 LTS-014 chr12 3951659 3952241 583 * PARP11 NA 0 NA 1.01680342963437 4 0.130210086654862 2 NA NA -5.76482525363838 LTS-014 chr12 3952242 3982475 30234 * PARP11 0.34 1 NA 0.981138960632189 43 0.195979028529782 2 2 0 -5.76973907443894 LTS-014 chr12 3982476 7948691 3966216 * c(LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, CHD4, C12orf57, PHB2, CLEC4C, ZNF384, DSTNP2, ATN1, PIANP, ENO2, FGF6, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, APOBEC1, ACSM4, DPPA3, NANOGNB, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NDUFA9, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, PARP11, ANO2, C12orf4, TIGAR, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, NA NA NA NA NA NA NA NA NA LTS-014 SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, NANOG, FGF23, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, DYRK4, CCND2, CD4, CD9, CD163, CD27, GDF3, CLSTN3, NCAPD2) 0.438741498463493 116 0.0864560638388814 0.905333436693191 5664 0.254981094217005 2 1 1 -6.76032806360432 LTS-014 NA NA NA NA LTS-014 chr12 7948692 7965198 16507 * character(0) NA 0 NA 0.496 1 NA NA NA NA NA LTS-014 chr12 7965199 9590665 1625467 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.410739704179086 44 0.0891709851226162 0.811546948667128 1979 0.2066122930339 2 1 1 -6.92443356834078 LTS-014 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.088 1 NA NA NA NA NA LTS-014 chr12 9633155 9717789 84635 * character(0) NA 0 NA 0.0812090613557007 92 0.107705884578615 0 NA NA -5.90020709545616 LTS-014 chr12 9717790 11002067 1284278 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R10, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.439617255663239 53 0.0484650682935913 0.76660105253225 1620 0.220407810400376 2 1 1 -7.04295533286432 LTS-014 chr12 11002068 11150319 148252 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH1, PRH2) 0.429949942170835 15 0.0704541052911819 0.852676110418837 187 0.226971362185821 2 1 1 -6.73595023663989 LTS-014 chr12 11150320 11174202 23883 * c(PRH1-PRR4, TAS2R20, PRB4) 0.312 1 NA 0.787954673032675 7 0.244070247499128 2 2 0 -5.76748029922862 LTS-014 chr12 11174203 11287271 113069 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.288448752114869 56 0.0796686563536426 0.961636559691982 178 0.39277384992065 4 3 1 -6.9167578006052 LTS-014 chr12 11287272 11338559 51288 * c(SMIM10L1, PRH1-PRR4, PRB4) 0.453 1 NA 0.865165113002528 3 0.139309009041052 2 2 0 -5.76501453665715 LTS-014 chr12 11338560 31254823 19916264 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, ABCC9, MIR3974, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DDX11, C12orf77, EMP1, EPS8, ETV6, STK38L, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, NA NA NA NA NA NA NA NA NA LTS-014 REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, TSPAN11, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, BCAT1, RECQL, MRPS35, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SLC15A5, BHLHE41, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.43599776833874 203 0.0946044520153296 0.840463583164219 10116 0.24024169195401 2 1 1 -7.18491362544538 LTS-014 NA NA NA NA LTS-014 chr12 31254824 31255187 364 * DDX11 NA 0 NA 1.132 1 NA NA NA NA NA LTS-014 chr12 31255188 31255280 93 * DDX11 0.475 1 NA 1.213 1 NA NA NA NA NA LTS-014 chr12 31255281 31257327 2047 * DDX11 0.347 1 NA 1.03930998269902 25 0.157482940875089 2 2 0 -5.76573899013917 LTS-014 chr12 31257328 31359116 101789 * DDX11 0.314878465675984 10 0.11152080025219 1.19739879578214 149 0.44031169186922 3 2 1 -6.77895283141311 LTS-014 chr12 31359117 31433458 74342 * character(0) NA 0 NA 0.676 1 NA NA NA NA NA LTS-014 chr12 31433459 31694001 260543 * c(DENND5B, FAM60A, FLJ13224) 0.42045165232477 7 0.073142392111617 0.870173175164702 298 0.219112428676915 2 1 1 -6.75043824439662 LTS-014 chr12 31694002 31743581 49580 * c(DENND5B-AS1, DENND5B) NA 0 NA 1.496 1 NA NA NA NA NA LTS-014 chr12 31743582 34175508 2431927 * c(DNM1L, RNU6-78P, DENND5B-AS1, FGD4, DENND5B, AMN1, ETFBKMT, SYT10, H3F3C, YARS2, PKP2, KIAA1551, BICD1, ALG10) 0.325258510583941 28 0.0870756224276578 1.20569556977183 1110 0.276292093130453 3 2 1 -6.82386006326594 LTS-014 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 1.26388945764186 55 0.238833589559098 3 NA NA -5.76441571325741 LTS-014 chr12 38710341 38710459 119 * character(0) 0.436 1 NA 0.668421416931322 3 0.0784283112147648 2 2 0 -5.76529653823478 LTS-014 chr12 38710460 40698656 1988197 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.412739471587446 16 0.158017245894238 0.801116582130494 984 0.197302154605198 2 1 1 -7.01485865884171 LTS-014 chr12 40698657 48104010 7405354 * c(PCED1B-AS1, MIR4698, YAF2, LRRK2, CNTN1, PRICKLE1, ANO6, ARID2, GXYLT1, PDZRN4, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, SLC38A2, SLC38A4, TWF1, RNY5, RPAP3, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, ENDOU, PCED1B, SCAF11) 0.434620234591635 87 0.0904378387240765 0.856876407913099 3716 0.223136750053692 2 1 1 -6.8081917481263 LTS-014 chr12 48104011 52100515 3996505 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, ASIC1, ATF1, SLC11A2, DHH, FKBP11, BIN2, LIMA1, HDAC7, NA NA NA NA NA NA NA NA NA LTS-014 PFKM, POU6F1, KANSL2, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, DDX23, SLC4A8, DAZAP2) 0.443321264645602 166 0.08502252627653 0.894323549072013 8220 0.461191506342714 2 1 1 -6.74446081494191 LTS-014 NA NA NA NA LTS-014 chr12 52100516 52115356 14841 * SCN8A NA 0 NA 1.237 1 NA NA NA NA NA LTS-014 chr12 52115357 53497480 1382124 * c(KRT71, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, LOC283335, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, ANKRD33, IGFBP6, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, ATG101, SCN8A, SOAT2, SPRYD3, ACVR1B, KRT75, ACVRL1) 0.43830718132192 126 0.0854047993149785 0.969414127577982 2934 0.573278670824169 2 1 1 -6.75793976765392 LTS-014 chr12 53497481 53497893 413 * SOAT2 NA 0 NA 0.864 1 NA NA NA NA NA LTS-014 chr12 53497894 58166939 4669046 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, PTGES3, OS9, ATF7, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, OR6C74, OR6C3, B4GALNT1, METTL21B, NA NA NA NA NA NA NA NA NA LTS-014 ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, ITGB7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ATP5B, PCBP2, CSAD, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, PIP4K2C, AAAS, INHBE, PYM1, SARNP, SOAT2, ZC3H10, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MARCH9, COQ10A, CD63, ESPL1, TESPA1, ZBTB39, PAN2) 0.445985808738131 122 0.0886813161259651 0.898190572205836 11499 0.21117109432762 2 1 1 -6.76660047612489 LTS-014 NA NA NA NA LTS-014 chr12 58166940 58168416 1477 * METTL21B NA 0 NA 0.675 1 NA NA NA NA NA LTS-014 chr12 58168417 58216989 48573 * c(TSFM, CTDSP2, AVIL, METTL21B) 0.402 1 NA 0.819253876558377 295 0.16153758359692 2 2 0 -5.77052813956605 LTS-014 chr12 58216990 58216996 7 * CTDSP2 0.272 1 NA 0.911 1 NA NA NA NA NA LTS-014 chr12 58216997 58217780 784 * CTDSP2 0.241473000463514 12 0.112451066799041 0.891267471275566 27 0.223567564374745 9 7 2 -6.75808764532154 LTS-014 chr12 58217781 58220809 3029 * c(CTDSP2, MIR26A2) 0.431 1 NA 0.9596970383052 27 0.500942521908862 2 2 0 -5.76446142890339 LTS-014 chr12 58220810 75436886 17216077 * c(LOC100130075, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, CTDSP2, TMEM5, CCT2, FRS2, CPSF6, WIF1, IRAK3, XPOT, C12orf56, RAB3IP, LRIG3, TPH2, CPM, BEST3, C12orf66, ZFC3H1, RPSAP52, RAB21, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, KCNMB4, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, IFNG, KCNC2, LRRC10, FLJ41278, MIRLET7I, LYZ, MDM2, CNOT2, NA NA NA NA NA NA NA NA NA LTS-014 IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TBC1D15, MIR548C, TSPAN8, MRS2P2, YEATS4, HMGA2, THAP2, LLPH, DYRK2, LGR5, ATP23, SLC16A7, HELB, USP15) 0.423670694405674 213 0.104076696339184 0.86139855740547 8083 0.253860890069027 2 1 1 -6.82764404917867 LTS-014 NA NA NA NA LTS-014 chr12 75436887 76881317 1444431 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2) 0.444726879703369 23 0.0411200882790766 0.787029255471554 1107 0.205737222454424 2 1 1 -7.03959573176074 LTS-014 chr12 76881318 88389572 11508255 * c(MIR1252, MIR4699, MIR548AL, OSBPL8, TSPAN19, E2F7, CSRP2, TMTC2, C12orf50, ZDHHC17, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, RASSF9) 0.423060077520899 69 0.122953499690346 0.876557140739596 3229 0.26612422702981 2 1 1 -6.74076449938755 LTS-014 chr12 88389573 88390122 550 * C12orf50 NA 0 NA 0.517 1 NA NA NA NA NA LTS-014 chr12 88390123 99019058 10628936 * c(TMPO-AS1, PGAM1P5, MIR1251, MIR4303, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, CCDC38, NEDD1, SLC9A7P1, IKBIP, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, C12orf50, DCN, EPYC, DUSP6, RMST, CCER1, ELK3, LINC01619, POC1B, MRPL42, HAL, LINC00936, C12orf74, LTA4H, LUM, MIR135A2, KITLG, LINC00615, PLEKHG7, MIR331, ATP2B1, CEP83, CDK17, SLC25A3, VEZT, FGD6, NDUFA12, CLLU1OS, CLLU1, TMCC3, NA NA NA NA NA NA NA NA NA LTS-014 NTN4, LOC643339, LOC643711, LOC643770, SNRPF, SNORA53, BTG1, TMPO, NR2C1, LOC728084, UBE2N, CEP290, USP44, EEA1, GALNT4, CRADD, SOCS2, C12orf29) 0.425800830725301 105 0.104390366101468 0.826124534866581 5398 0.22527411096309 2 1 1 -7.23425480232795 LTS-014 NA NA NA NA LTS-014 chr12 99019059 99019772 714 * IKBIP 0 1 NA 0.842875904572957 13 0.654080446710671 2 2 0 -5.7644122162198 LTS-014 chr12 99019773 101016071 1996299 * c(MIR1827, DEPDC4, IKBIP, FAM71C, UHRF1BP1L, SLC17A8, GAS2L3, APAF1, GOLGA2P5, SCYL2, ANKS1B, ACTR6, NR1H4) 0.309902784307903 11 0.208714376383351 0.834564955942344 1187 0.228112348875742 2 1 1 -7.00403038641738 LTS-014 chr12 101016072 101017445 1374 * GAS2L3 0.465 1 NA 1.02152482783226 7 0.540975001622951 2 2 0 -5.76447063672283 LTS-014 chr12 101017446 105789929 4772484 * c(MIR3652, MIR3922, C12orf45, SPIC, ANO4, ALDH1L2, SLC5A8, KIAA1033, TTC41P, UTP20, GAS2L3, LINC00485, HCFC2, IGF1, C12orf42, C12orf75, ARL1, ASCL1, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, NT5DC3, PMCH, PARPBP, APPL2, DRAM1, STAB2, CHPT1, TDG, HSP90B1, C12orf73, TXNRD1, NUP37, GNPTAB, GLT8D2, SLC41A2) 0.447325790138095 77 0.0632504515179527 0.837733107080382 4229 0.753143313389293 2 1 1 -6.77840569240936 LTS-014 chr12 106457107 109331162 2874056 * c(LOC100287944, LOC100505978, CKAP4, PRDM4, PWP1, FICD, ASCL4, BTBD11, CMKLR1, CRY1, DAO, ISCU, CORO1C, TCP11L2, TMEM119, SSH1, RIC8B, SVOP, POLR3B, RFX4, SELPLG, LOC728739, MTERF2, TMEM263, WSCD2, SART3, NUAK1) 0.428425654377371 51 0.100567838776014 0.88529820534522 2590 0.400620130510704 2 1 1 -6.73424610330889 LTS-014 chr12 109331163 110296600 965438 * c(USP30-AS1, MIR4497, ALKBH2, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, SVOP, TRPV4, UNG, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B) 0.436546589557235 55 0.124486622542019 0.960995239359331 1784 0.958232868557636 2 1 1 -6.73821181965985 LTS-014 chr12 110296601 113274344 2977744 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.437672990268189 82 0.10171367920979 0.842024011829534 4011 0.218159794758526 2 1 1 -6.81501667612805 LTS-014 chr12 113274345 113275521 1177 * RPH3A NA 0 NA 1.022 1 NA NA NA NA NA LTS-014 chr12 113275522 122693438 9417917 * c(LINC00173, MIR1178, PXN-AS1, NRAV, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, DTX1, PLBD2, MLXIP, RPH3A, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, CFAP73, TMEM233, MSI1, NOS1, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, NA NA NA NA NA NA NA NA NA LTS-014 TRIAP1, PLA2G1B, TPCN1, RHOF, VSIG10, TESC, PRKAB1, WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, TBX5, TBX3, HNF1A, MIR620, DDX54, B3GNT4, C12orf49, SLC8B1, RNF34, COQ5, RASAL1, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, RITA1, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, MLEC, RBM19, RNF10) 0.449451461861187 157 0.0829973312715746 0.906826716910839 8579 0.224261952911501 2 1 1 -6.84118288422213 LTS-014 NA NA NA NA LTS-014 chr12 122693439 123186178 492740 * c(CLIP1-AS1, HCAR2, ZCCHC8, DIABLO, CLIP1, VPS33A, RSRC2, KNTC1) 0.426000924324057 12 0.054 0.830856892854632 881 0.246951161280287 2 1 1 -6.75965829065186 LTS-014 chr12 123186179 123186838 660 * HCAR2 0.364 1 NA 0.387400448415636 39 0.425750403649635 1 1 0 -5.76452977784421 LTS-014 chr12 123186839 123186871 33 * HCAR2 NA 0 NA 1.084 1 NA NA NA NA NA LTS-014 chr12 123186872 124330308 1143437 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, HCAR2, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65) 0.419137897872694 52 0.0987812058107098 0.867139574578057 2494 0.21306086794355 2 1 1 -6.74881817651908 LTS-014 chr12 124330309 124330311 3 * DNAH10 0.468 1 NA 1.465 1 NA NA NA NA NA LTS-014 chr12 124330312 125510104 1179793 * c(ZNF664-FAM101A, MIR5188, BRI3BP, RFLNA, ZNF664, DNAH10, DHX37, UBC, CCDC92, SCARB1, NCOR2) 0.438244832292487 32 0.119669837301124 0.952062900261755 1204 0.214545730816068 2 1 1 -6.82227514402734 LTS-014 chr12 125510105 125510769 665 * BRI3BP 0 1 NA 1.03055282690479 15 0.859664319869763 2 2 0 -5.76442315413538 LTS-014 chr12 125510770 126142197 631428 * c(TMEM132B, AACS) 0.354130821142205 9 0.198822436136144 0.924116734083588 435 0.386688376847865 2 1 1 -6.83075358282061 LTS-014 chr12 126142198 126142530 333 * TMEM132B 0.488 1 NA 0.998335861274448 7 0.342613693329883 2 2 0 -5.76443607816515 LTS-014 chr12 126142531 133425319 7282789 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1) 0.443996279501746 88 0.102450854109846 0.938938383168599 3656 0.264920866660088 2 1 1 -6.97275636482668 LTS-014 chr12 133425320 133779616 354297 * c(ZNF605, ZNF891, ZNF268, CHFR, ZNF10, ZNF140) 0.342829437458745 3 0.257826168829569 0.802507835893878 789 0.197586975542297 2 1 1 -6.85350904063954 LTS-014 chr12 133779617 133812708 33092 * c(ZNF268, ANHX) NA 0 NA 0.798370829595452 159 0.14096030554109 2 NA NA -5.77436037743811 LTS-014 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.45 1 NA 1.47592733262443 3 0.374692318220341 4 4 0 -5.78524905297984 LTS-014 chr13 19600476 21722643 2122168 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, SAP18, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, TUBA3C, ZMYM2, IFT88, ZMYM5, TPTE2) 0.454638752572967 34 0.0356686199008708 0.837572204098557 1405 0.27807468761395 2 1 1 -6.9958337249644 LTS-014 chr13 21722644 21727828 5185 * c(SAP18, SKA3) 0.202 1 NA 0.923875636202243 17 0.254156230901157 2 2 0 -5.76451260991806 LTS-014 chr13 21727829 21750538 22710 * c(SKA3, MRPL57) 0.270661176521852 14 0.039951619092746 1.09537563213251 82 0.392163678964621 4 3 1 -6.76251115615703 LTS-014 chr13 21750539 21949267 198729 * c(SKA3, ZDHHC20, MIPEPP3, MRPL57) 0.489 1 NA 0.881312027922135 39 0.155590829012749 2 2 0 -5.7644153940598 LTS-014 chr13 21949268 24890147 2940880 * c(MIR2276, SACS-AS1, LINC00327, LINC00424, SPATA13-AS1, MICU2, SPATA13, FGF9, ZDHHC20, SACS, C1QTNF9, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1, TNFRSF19, SGCG, BASP1P1, MIPEPP3) 0.450158223936082 29 0.0753721799952833 0.854583775044575 1177 0.267499602639099 2 1 1 -6.78991087286421 LTS-014 chr13 24890148 24890157 10 * c(SPATA13, C1QTNF9) 0.475 1 NA 1.606 1 NA NA NA NA NA LTS-014 chr13 24890158 24895805 5648 * c(SPATA13, C1QTNF9) 0.433400895168984 3 0.030610455730028 1.66351249017208 39 1.62212524206507 4 2 2 -6.73333962639146 LTS-014 chr13 24895806 24895892 87 * c(SPATA13, C1QTNF9) NA 0 NA 0.685 1 NA NA NA NA NA LTS-014 chr13 24895893 108885831 83989939 * c(LINC00462, FKSG29, LINC00426, TPT1-AS1, PAN3-AS1, UBAC2-AS1, MIR1297, MIR548F5, MIR759, MIR320D1, MIR4306, MIR3170, MIR4305, MIR3169, MINOS1P1, MIR3665, MIR3613, RBM26-AS1, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, MIR4703, TPTE2P5, GPC6, MIR5007, MIR5693, MIR5006, MIR548AS, LINC00558, LINC00563, LINC00441, MED4-AS1, GPC5-AS1, GPC6-AS2, LINC00297, NA NA NA NA NA NA NA NA NA LTS-014 PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, MTUS2-AS1, LINC00331, LINC00332, LINC00333, LINC00351, LINC00353, LINC00366, LINC00379, LINC00381, LINC00398, LINC00423, LINC00433, LINC00443, LINC00446, LINC00457, LINC00559, LINC00571, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, STARD13-AS, RNASEH2B-AS1, SMIM2-IT1, PCCA-AS1, NALCN-AS1, LINC00348, MRPS31P5, LINC00359, FRY, MBNL2, FARP1, LPAR6, SLC25A15, LHFP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TRIM13, USPL1, CDK8, MRPS31, SPRY2, ABCC4, DLEU1, N4BP2L2, CDX2, PIBF1, OLFM4, POSTN, HSPH1, WASF3, SUGT1, RCBTB2, LECT1, SOX21, WBP4, AKAP11, KLF12, EXOSC8, SLITRK1, KCTD12, ARL11, WDFY2, N4BP2L2-IT2, CLN5, LINC00284, METTL21EP, CSNK1A1L, RXFP2, TEX26, SLAIN1, CPB2, RNF113B, PARP4, LINC00410, FAM216B, LACC1, LINC00330, LINC00343, HNRNPA1L2, ST13P4, B3GLCT, DACH1, DGKH, CCDC122, GPR180, STOML3, DCT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, EEF1DP3, ELF1, ERCC5, ESD, AMER2, USP12, MTIF3, GSX1, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, SPATA13, LNX2, FGF14, GPC5, FNDC3A, DZIP1, DIS3, PDS5B, MYCBP2, VWA8, FOXO1, ZC3H13, SPG20, LRCH1, FLT1, FLT3, MTUS2, DOCK9, TGDS, ALOX5AP, SLC25A30, PAN3, NALCN, SLITRK5, FBXL3, INTS6, CKAP2, HS6ST3, DAOA, NUFIP1, SNORD102, NBEA, OXGR1, PCDH17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, OR7E156P, GPR12, SUGT1P3, SIAH3, KCNRG, LINC00282, SLC46A3, GPR18, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GTF3A, GUCY1B2, ALG5, HMGB1, HTR2A, UBAC2, LINC00550, LINC00347, C1QTNF9, FREM2, NEK5, PDX1, TPTE2P6, KPNA3, IPO5, KCTD4, RASL11A, SHISA2, NHLRC3, SERP2, LCP1, LIG4, SERTM1, LINC00547, LINC00548, LMO7, MIR16-1, MIR19B1, MIR17HG, SMAD9, ATP5EP2, LINC00544, ALG11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MZT1, NEK3, ATP12A, PABPC3, PCCA, PCDH8, PCDH9, VPS36, POLR1D, PHF11, POMP, UFM1, ATP8A2, ATP7B, UBL3, POU4F1, NDFIP2, BIVM, SOHLH2, ENOX1, ARGLU1, RCBTB1, NUDT15, GPALPP1, SUPT20H, UGGT2, CENPJ, THSD1, DNAJC3, RNF17, CYSLTR2, SPRYD7, COG6, KLHL1, RAP2A, RB1, RFC3, RFXAP, RNF6, RPL21, SNORA27, ATXN8OS, RBM26, TSC22D1-AS1, MIR4500HG, CCDC168, TPTE2P1, URAD, ZAR1L, LINC00598, LINC00371, SERPINE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CTAGE11P, PCDH20, SLC7A1, SLC10A2, SLC15A1, BRCA2, SNORA31, KLF5, BTF3P11, MIR621, MIR622, MIR623, TPP2, TPT1, TRPC4, LINC00460, FAM155A, CCDC169, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, RNF219, NAA16, RNASEH2B, DHRS12, BORA, RUBCNL, PROSER1, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KATNAL1, KBTBD7, SLITRK6, STK24, EBPL, TMTC4, MEDAG, ABHD13, ZIC5, TNFSF11, GGACT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SCEL, SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, CLDN10, MTMR6, DCLK1, TEX30, ITGBL1, KL, TM9SF2, EPSTI1, ITM2B, MTRF1, UTP14C, NUP58, TBC1D4) 0.430090422082894 491 0.100304645519526 0.855992219850615 25254 0.325408065911407 2 1 1 -7.13841134816676 LTS-014 NA NA NA NA LTS-014 chr13 108885832 114839373 5953542 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.436039595480634 129 0.095330819976559 0.930363730952105 3930 0.298340527921404 2 1 1 -6.84496663880799 LTS-014 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.487 1 NA NA NA NA NA LTS-014 chr13 114897818 115004551 106734 * c(RASA3, CDC16) 0 1 NA 0.814041432235593 21 0.428595335841119 2 2 0 -5.76666473366509 LTS-014 chr13 115004552 115092817 88266 * c(CHAMP1, UPF3A, CDC16) NA 0 NA 0.765883946421478 203 0.149513967814787 2 NA NA -5.81141651968395 LTS-014 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.384 1 NA 1.09622442790436 11 0.541503244345187 3 3 0 -5.79998850922154 LTS-014 chr14 20201973 20404767 202795 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.316047009579372 12 0.0203715487874634 1.33666321913728 192 0.261010089664426 3 2 1 -7.78052702627643 LTS-014 chr14 20404768 20404847 80 * OR4K1 NA 0 NA 1.067 1 NA NA NA NA NA LTS-014 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.7 1 NA NA NA NA NA LTS-014 chr14 20443534 20502120 58587 * c(OR4K14, OR4K13, OR4K15) 0.41 1 NA 0.920515658952772 73 1.3021184732062 2 2 0 -5.76444756232661 LTS-014 chr14 20502121 22386967 1884847 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, NA NA NA NA NA NA NA NA NA LTS-014 RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.443414670826085 116 0.053677360176356 0.890866474459631 3391 0.291170787711559 2 1 1 -6.75808665225468 LTS-014 NA NA NA NA LTS-014 chr14 22386968 22392269 5302 * character(0) NA 0 NA 1.237 1 NA NA NA NA NA LTS-014 chr14 22392270 22992643 600374 * character(0) 0.447042050441312 37 0.0377729903343487 1.09686603450856 727 0.279264897078237 2 1 1 -7.02965741465406 LTS-014 chr14 22992644 23495424 502781 * c(MIR4707, PRMT5, MRPL52, DAD1, REM2, LRP10, MMP14, OXA1L, HAUS4, RBM23, PSMB5, C14orf93, ABHD4, AJUBA, SLC7A7) 0.454690771897399 18 0.0530648881365181 0.853575527331955 1204 0.176233080897681 2 1 1 -6.84486115228774 LTS-014 chr14 23495425 31029521 7534097 * c(MIR208B, MIR4307, LINC00645, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, DHRS2, EFS, IRF9, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, PSMB11, LTB4R, MDP1, CTSG, FITM1, NOP9, ADCY4, FOXG1, ACIN1, KHNYN, SLC7A8, NGDN, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, LINC01551, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, SLC22A17, C14orf119, RNF31, DHRS4-AS1, G2E3, NA NA NA NA NA NA NA NA NA LTS-014 PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, REC8) 0.43771259517735 104 0.103294781087191 0.912460360015221 5686 0.218544772735427 2 1 1 -6.84004415676673 LTS-014 NA NA NA NA LTS-014 chr14 31029522 31029687 166 * G2E3 NA 0 NA 0.702 1 NA NA NA NA NA LTS-014 chr14 31029688 36005659 4975972 * c(LOC100506071, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, COCH, SPTSSA, SCFD1, HECTD1, HEATR5A, IGBP1P1, FAM177A1, GPR33, STRN3, ARHGAP5, NFKBIA, PPP2R3C, G2E3, EAPP, PSMA6, SNX6, NPAS3, SRP54, MIR624, NUBPL, INSM2, ARHGAP5-AS1, AKAP6, KIAA0391) 0.434348667435156 59 0.109135203735233 0.839762265071836 3081 0.240906081952498 2 1 1 -6.85579207946643 LTS-014 chr14 36005660 36010868 5209 * c(RALGAPA1, INSM2) 0 1 NA 0.903921732989417 43 0.577716845042106 2 2 0 -5.76441566206224 LTS-014 chr14 36010869 36960504 949636 * c(PTCSC3, LINC00609, RALGAPA1, SFTA3, MBIP, BRMS1L) 0.440273993097465 4 0.0451986356726248 0.817139664374669 452 0.261239127567196 2 1 1 -6.79844402228453 LTS-014 chr14 36960505 36982176 21672 * SFTA3 NA 0 NA 0.972 1 NA NA NA NA NA LTS-014 chr14 36982177 38016795 1034619 * c(SLC25A21-AS1, MIR4503, MIPOL1, SFTA3, NKX2-8, PAX9, NKX2-1, SLC25A21) 0.279995730316366 8 0.233961802437919 0.939184554143207 430 0.391621610199042 2 1 1 -6.99414337155423 LTS-014 chr14 38016796 38018314 1519 * MIPOL1 0.482 1 NA 0.901232004884057 37 0.412343192508872 2 2 0 -5.76441256900232 LTS-014 chr14 38018315 38725380 707066 * c(MIPOL1, CLEC14A, FOXA1, SSTR1) 0.478227910781424 6 0.0212171314429323 0.925508221332677 424 0.208797338276583 2 1 1 -8.71332333201162 LTS-014 chr14 38725381 64637049 25911669 * c(SNORD127, KTN1-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, TMEM30B, MDGA2, LINC01599, NID2, ATG14, FKBP3, DAAM1, SAMD4A, FAM179B, SYNE2, NA NA NA NA NA NA NA NA NA LTS-014 KLHDC2, FBXO33, GCH1, TIMM9, ATP5S, KCNH5, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, ERO1A, HIF1A, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MGAT2, MIA2, MNAT1, SIX6, OTX2, ATL1, NIN, DACT1, JKAMP, DHRS7, C14orf166, SIX4, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, ACTR10, PSMA3, PSMC6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, FANCM, PYGL, ARID4A, SAV1, RPL36AL, RPS29, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SOS2, STYX, CCDC175, VCPKMT, L2HGDH, DDHD1, SGPP1, TMX1, SYT16, FSCB, GEMIN2, CDKL1, NEMF, MAPK1IP1L, KIAA0586, DLGAP5) 0.423885511322091 170 0.102841588076413 0.825919468678773 12601 0.252499214991945 2 1 1 -7.64555097597641 LTS-014 NA NA NA NA LTS-014 chr14 64637050 73989983 9352934 * c(MED6, LOC100289511, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, ADAM21P1, PPP1R36, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, SYNE2, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, DCAF4, PLEK2, GPX2, ADAM20P1, SNORD56B, HSPA2, RAB15, ARG2, HEATR4, PLEKHD1, MAX, MAP3K9, LINC00238, TEX21P, MTHFD1, RDH11, COX16, ATP6V1D, PIGH, ZFYVE1, EXD2, NA NA NA NA NA NA NA NA NA LTS-014 SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, PLEKHH1, RBM25, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, SLC8A3, SLC10A1, SPTB, ZFP36L1, ZBTB25, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, CHURC1, AKAP5, RGS6, SUSD6) 0.436666639250034 147 0.0890622518683182 0.870675539586812 7344 0.218041445424307 2 1 1 -6.75463810256997 LTS-014 NA NA NA NA LTS-014 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.445 1 NA NA NA NA NA LTS-014 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.420523083459875 43 0.188630545869418 1 NA NA -5.77117492842307 LTS-014 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.777 1 NA NA NA NA NA LTS-014 chr14 74035793 91883183 17847391 * c(SNORA11B, MIR1260A, MIR4505, MIR4709, DIO2-AS1, LINC00911, BATF, NPC2, AHSA1, ACOT2, TMED10, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, VSX2, FOXN3-AS1, LINC00642, NA NA NA NA NA NA NA NA NA LTS-014 LTBP2, ALDH6A1, CCDC88C, COQ6, FCF1, PGF, KCNK10, NRDE2, VRTN, FLVCR2, GPATCH2L, TDP1, SPATA7, YLPM1, KCNK13, PSMC1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, SEL1L, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, ZC3H14, C14orf159, CALM1, BBOF1, GPR68, SLIRP, DNAL1, RPS6KL1, GPR65, STON2, CIPC, ALKBH1, EIF2B2, EFCAB11, ELMSAN1, LIN52, NEK9, PNMA1, RPS6KA5, NRXN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SPTLC2, ENTPD5, ACYP1, AREL1) 0.440611706026967 195 0.0941055419552876 0.876506969371863 10570 0.365920002797229 2 1 1 -6.74063957089708 LTS-014 NA NA NA NA LTS-014 chr14 91883184 91883368 185 * CCDC88C NA 0 NA 0.812 1 NA NA NA NA NA LTS-014 chr14 91883369 92629917 746549 * c(FBLN5, TC2N, ATXN3, CCDC88C, NDUFB1, CPSF2, PPP4R3A, CATSPERB, TRIP11) 0.444781173094989 26 0.0575154427423292 0.785858535398243 1024 0.299475042491472 2 1 1 -6.82545202375555 LTS-014 chr14 92629918 92629923 6 * CPSF2 NA 0 NA 0.866 1 NA NA NA NA NA LTS-014 chr14 92629924 104501474 11871551 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, CYP46A1, PAPOLA, CHGA, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, SLC24A4, SLC25A29, DEGS2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, EIF5, EML1, RCOR1, PPP1R13B, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, NA NA NA NA NA NA NA NA NA LTS-014 FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, KLC1, SERPINA13P, LINC01550, RTL1, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, ATG2B, UBR7, PPP2R5C, MEG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, RD3L, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.448037229096065 207 0.0738681179596325 0.896190734052828 10710 0.336109558524287 2 1 1 -6.7742851421091 LTS-014 NA NA NA NA LTS-014 chr14 104501475 106329919 1828445 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00638, ELK2AP, AKT1, PACS2, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, TMEM179, C14orf180, MIR203A, CDCA4, INF2, TEX22, TMEM121, BTBD6, MTA1) 0.443492912437939 90 0.0889595175082794 0.94303691693021 3077 0.238885923445173 2 1 1 -6.82607166738165 LTS-014 chr14 106329920 106385274 55355 * FAM30A 0 1 NA 0.915356207589449 127 0.28754842959505 2 2 0 -5.76495607173888 LTS-014 chr14 106385275 106518895 133621 * c(ADAM6, FAM30A) 0.373987132217374 3 0.0961925153013476 0.871428605859962 78 0.19386224730223 2 1 1 -6.94898391483642 LTS-014 chr14 106518896 106539113 20218 * character(0) NA 0 NA 0.347 1 NA NA NA NA NA LTS-014 chr14 106539114 106733375 194262 * character(0) 0.339108290109685 3 0.104734585182419 0.696124095952678 64 0.251129618064944 2 1 1 -7.27956223242413 LTS-014 chr14 106733376 106733391 16 * character(0) NA 0 NA 1.088 1 NA NA NA NA NA LTS-014 chr14 106733392 106805408 72017 * LINC00226 0.211651052558861 11 0.0698460645081219 1.55681911835959 35 0.716082491374968 5 4 1 -6.7404195174041 LTS-014 chr14 106805409 106816111 10703 * character(0) NA 0 NA 1.72589094494098 11 0.553255686410411 4 NA NA -5.76443507001671 LTS-014 chr14 106816112 106829715 13604 * character(0) NA 0 NA 0.803 1 NA NA NA NA NA LTS-014 chr14 106829716 106926328 96613 * character(0) 0.375 1 NA 0.850008981679344 53 0.256312609612079 2 2 0 -5.76563080168225 LTS-014 chr14 106926329 107178965 252637 * LINC00221 0.354566228927864 17 0.0818749943870676 1.02500325058757 95 0.261849612344342 3 2 1 -6.8438591828873 LTS-014 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.865542484030535 53 0.270430286604362 2 NA NA -5.76472159137245 LTS-014 chr15 20169987 20445987 276001 * character(0) 0.317 1 NA 0.895590002695624 23 0.422302801466533 2 2 0 -5.76462010415799 LTS-014 chr15 20445988 25222219 4776232 * c(HERC2P7, GOLGA8DP, MIR4508, POTEB, TUBGCP5, NIPA1, CYFIP1, NPAP1, LOC283683, OR4N4, HERC2P3, GOLGA6L1, GOLGA8IP, WHAMMP3, LINC01193, GOLGA8EP, OR4M2, OR4N3P, HERC2P2, NF1P2, GOLGA6L22, NDN, MAGEL2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA8S, SNRPN, GOLGA6L6, LOC727924, GOLGA8CP, MKRN3, PWRN1, PWRN2, NIPA2, SNURF) 0.347779023880958 44 0.117140841486588 0.915168032224019 1342 0.347440725240177 2 1 1 -7.06463997715129 LTS-014 chr15 25222220 25415825 193606 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD116-26, SNORD116-28, SNORD116-29, PWAR1, SNORD109B, PWARSN, IPW, SNRPN, SNORD116-19, PWAR5, SNURF) 0.419 1 NA 0.880411474144823 179 0.200440861162781 2 2 0 -5.764422353105 LTS-014 chr15 25415826 28632896 3217071 * c(SNORD115-2, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, NA NA NA NA NA NA NA NA NA LTS-014 LOC100128714, MIR4715, GABRA5, GABRB3, GABRG3, SNORD109B, SNORD115-1, PWAR4, IPW, OCA2, LINC00929, ATP10A, UBE3A, HERC2) 0.436910164254622 23 0.0620087651588204 0.910126313397313 1296 0.21584548098614 2 1 1 -6.77569227639421 LTS-014 NA NA NA NA LTS-014 chr15 28632897 28882261 249365 * character(0) NA 0 NA 0.44 1 NA NA NA NA NA LTS-014 chr15 28882262 29090718 208457 * c(LOC100289656, HERC2P9, WHAMMP2, PDCD6IPP2, GOLGA6L7P) NA 0 NA 0.656441156325992 75 0.243270995594003 1 NA NA -5.94077457724531 LTS-014 chr15 29090719 29093588 2870 * c(PDCD6IPP2, GOLGA6L7P) NA 0 NA 1.222 1 NA NA NA NA NA LTS-014 chr15 29093589 40545499 11451911 * c(SRP14-AS1, WHAMMP1, LOC100288637, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHRM5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, FSIP1, FAN1, GOLGA8A, FAM189A1, LPCAT4, NUTM1, DKFZP434L187, GREM1, LOC283710, FAM98B, APBA2, FMN1, HERC2P10, C15orf53, C15orf54, MIR211, MEIS2, TRPM1, GOLGA8B, EIF2AK4, EMC4, KLF13, MTMR10, ZNF770, NOP10, NSMCE3, EMC7, PAK6, NA NA NA NA NA NA NA NA NA LTS-014 AVEN, GJD2, RYR3, SCG5, C15orf56, PDCD6IPP2, GOLGA8T, SRP14, ACTC1, BUB1B, THBS1, TJP1, ANP32AP1, GOLGA8O, GOLGA6L7P, KATNBL1, C15orf41, CHRFAM7A, ARHGAP11B, DPH6, BMF, AQR, ARHGAP11A, SLC12A6) 0.431948480694883 152 0.0932518776612434 0.853519397350512 6157 0.266316256820318 2 1 1 -6.83723375142808 LTS-014 NA NA NA NA LTS-014 chr15 40545500 40556071 10572 * PAK6 NA 0 NA 1.098 1 NA NA NA NA NA LTS-014 chr15 40556072 42067613 1511542 * c(ANKRD63, RAD51-AS1, CHP1, CHST14, OIP5, EXD1, RHOV, BAHD1, MAPKBP1, RTF1, MGA, RPAP1, GCHFR, RPUSD2, MRPL42P5, ITPKA, IVD, C15orf52, LTK, NDUFAF1, NUSAP1, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, PHGR1, SPINT1, MIR626, OIP5-AS1, TYRO3, CHAC1, ZFYVE19, DISP2, C15orf57, KNSTRN) 0.435294307334422 59 0.108568998118365 0.890028252555959 3515 0.202438917900814 2 1 1 -6.73508735252882 LTS-014 chr15 42067614 42483499 415886 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, JMJD7-PLA2G4B) 0.445855185679384 44 0.0724779291330574 0.970709089268831 1389 0.206493813294913 2 1 1 -6.80570905606265 LTS-014 chr15 42483500 42483624 125 * VPS39 NA 0 NA 0.682 1 NA NA NA NA NA LTS-014 chr15 42483625 45059909 2576285 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, VPS39, CCNDBP1, LRRC57, HYPK, GANC, TMEM87A, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, EIF3J-AS1, MIR627, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, SNAP23, TGM5, PPIP5K1, LCMT2) 0.412107359510731 66 0.115236921247697 0.855546567064695 4892 0.221450725921657 2 1 1 -6.78170849665095 LTS-014 chr15 45059910 45123849 63940 * TRIM69 NA 0 NA 1.85366937849347 39 2.45164489137687 5 NA NA -5.76448122102637 LTS-014 chr15 45123850 45127366 3517 * character(0) NA 0 NA 0.549 1 NA NA NA NA NA LTS-014 chr15 45127367 48787470 3660104 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.443702112977807 24 0.102070938318776 0.881003371160507 2478 0.233143825464432 2 1 1 -6.74006346443879 LTS-014 chr15 48787471 62359802 13572332 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR2116, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, ADAM10, GNB5, ARPP19, SLC27A2, LEO1, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, FOXB1, PRTG, LINC00926, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, AQP9, USP50, TEX9, NA NA NA NA NA NA NA NA NA LTS-014 TNFAIP8L3, LIPC, SHC4, UNC13C, MYO1E, MYO5A, NEDD4, RSL24D1, FAM63B, RNF111, ZNF280D, TRPM7, VPS13C, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, RORA, RFX7, BNIP2, HSP90AB4P, MIR628, TCF12, ICE2, SLTM, ATP8B4, POLR2M, SPPL2A, CGNL1, ALDH1A2, USP8, CCNB2, CCPG1, GCNT3, LDHAL6B, COPS2, PIGB, SECISBP2L) 0.433809188837059 224 0.0921284437301443 0.830924165082699 9922 0.251556206040706 2 1 1 -7.16267306305006 LTS-014 NA NA NA NA LTS-014 chr15 62359803 73468925 11109123 * c(NR2E3, USP3-AS1, ADPGK-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, IQCH-AS1, MIR4511, PDCD7, FEM1B, DENND4A, SNAPC5, CORO2B, CLPX, LACTB, DIS3L, SENP8, MTFMT, SLC51B, HIGD2B, C2CD4A, DRAIC, C15orf61, CT62, GRAMD2, MGC15885, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, ARIH1, GLCE, EWSAT1, FBXL22, HEXA, TMEM202, RBPMS2, ANKDD1A, C2CD4B, KBTBD13, UBAP1L, SKOR1, MIR190A, SMAD3, SMAD6, LINC00593, MYO9A, NEO1, NA NA NA NA NA NA NA NA NA LTS-014 OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, PKM, CSNK1G1, PPIB, LRRC49, PAQR5, DPP8, PARP16, TIPIN, CLN6, ZWILCH, UACA, LARP6, GOLGA6B, MAP2K1, MAP2K5, THAP10, PARP6, IGDCC4, BBS4, SNORD16, SNORD18A, SNORD18B, SNORD18C, CELF6, RPL4, RPLP1, IQCH, SNX1, SCARNA14, MIR629, MIR630, TLE3, TPM1, CA12, NOX5, AAGAB, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, PLEKHO2, ANP32A, VWA9, ADPGK, APH1B, TLN2, FAM96A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MEGF11, CILP, PIAS1, RAB11A, HERC1, CALML4, SLC24A1, TRIP4, KIF23, IGDCC3, KIAA0101, USP3) 0.43641614835425 155 0.0984321422907411 0.875607024914305 10191 0.212120741496878 2 1 1 -6.74226506791905 LTS-014 NA NA NA NA LTS-014 chr15 73468926 73470660 1735 * NEO1 NA 0 NA 1.193 1 NA NA NA NA NA LTS-014 chr15 73470661 74611024 1140364 * c(HCN4, LOXL1-AS1, TBC1D21, NPTN, REC114, LOC283731, GOLGA6A, ISLR, C15orf59, LOXL1, NEO1, PML, ISLR2, STRA6, CCDC33, CD276, STOML1) 0.433453705118912 35 0.0893790906685646 0.980463235372658 1267 0.254253633611151 2 1 1 -6.84879504491671 LTS-014 chr15 74611025 86807761 12196737 * c(DNM1P35, NA, UBE2Q2P2, MIR1276, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, NA NA NA NA NA NA NA NA NA LTS-014 SEC11A, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, IDH3A, TMC3, IL16, IREB2, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, NMB, SCAPER, HDGFRP3, PDE8A, BTBD1, TM6SF1, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, ADAMTSL3, CEMIP, ALPK3, PTPN9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ABHD17C, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 COX5A, HOMER2, ZNF592, ARNT2) 0.441519316830923 206 0.0779409378567215 0.888586205401008 10404 0.24277119055729 2 1 1 -6.74709904496147 LTS-014 NA NA NA NA LTS-014 chr15 86807762 86809681 1920 * AGBL1 0 1 NA 1.05270533696498 15 0.726696229193333 2 2 0 -5.76447818942168 LTS-014 chr15 86809682 88417497 1607816 * c(AGBL1, LINC00052, AGBL1-AS1) 0.291239346834639 9 0.229327822123701 0.926035827847404 375 0.350890834362952 2 1 1 -6.97142647065626 LTS-014 chr15 88417498 88417507 10 * character(0) 0.375 1 NA 1.725 1 NA NA NA NA NA LTS-014 chr15 88417508 102516492 14098985 * c(FAM138E, LINC00930, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR3529, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, ADAMTS17, ACAN, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, OR4F4, SLCO3A1, NTRK3-AS1, LINC00928, FAM169B, ANPEP, IDH2, NA NA NA NA NA NA NA NA NA LTS-014 ZNF774, IGF1R, ARPIN, ISG20, KIF7, ZNF710, HDDC3, WASH3P, SPATA41, GDPGP1, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, NTRK3, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, AEN, CRTC3, TTC23, MRPS11, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.441019263980008 246 0.0858297615485426 0.901417237991127 8881 0.234027376388232 2 1 1 -6.80936567016768 LTS-014 NA NA NA NA LTS-014 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.691 1 NA NA NA NA NA LTS-014 chr16 81704 96405 14702 * character(0) 0.045 1 NA 0.704800663225343 3 0.13978674233751 2 2 0 -5.7870812647009 LTS-014 chr16 96406 115072 18667 * c(POLR3K, RHBDF1, SNRNP25) 0.100866184641122 12 0.0522412817142872 0.481680176182355 208 0.258170265674797 1 1 0 -6.73372120672308 LTS-014 chr16 115073 136888 21816 * c(MPG, RHBDF1, NPRL3) 0.147 1 NA 0.48919314390977 37 0.136988721834719 1 1 0 -5.76441070028741 LTS-014 chr16 136889 330828 193940 * c(HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, LUC7L, PDIA2, NPRL3, FAM234A, RGS11) 0.0882065820847793 6 0.0262100489634542 0.50466667473129 434 0.15101291903192 1 1 0 -6.84053301455061 LTS-014 chr16 330829 333239 2411 * c(ARHGDIG, LUC7L, PDIA2) 0.290978277236889 3 0.232226182847671 0.876771406508113 35 0.572064655216435 7 5 2 -6.73919112385515 LTS-014 chr16 333240 334580 1341 * c(ARHGDIG, LUC7L, PDIA2) 0.441 1 NA 0.896583487351917 7 0.121953347832764 2 2 0 -5.76442422802748 LTS-014 chr16 334581 1278424 943844 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSG1, DECR2, NHLRC4, SOX8, JMJD8, PRR25, C1QTNF8, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, NARFL, LINC00235, TPSB2, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, AXIN1, WDR24, HAGHL, METTL26, MCRIP2, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.444754746925758 147 0.0603993327458344 0.962136802225078 2966 0.348656827730668 2 1 1 -6.79163937365271 LTS-014 chr16 1278425 1278744 320 * TPSB2 0.225 1 NA 0.905399650639116 7 0.627368236972438 2 2 0 -5.76441046165126 LTS-014 chr16 1278745 1292257 13513 * c(TPSB2, TPSAB1) 0.251114477897079 11 0.0830533235063748 1.29998558544674 45 0.654704611472096 4 3 1 -6.74992586338667 LTS-014 chr16 1292258 1306642 14385 * c(TPSD1, TPSAB1) 0.488 1 NA 1.17987115366645 13 0.407688402255121 3 3 0 -5.76472113798917 LTS-014 chr16 1306643 2672816 1366174 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, NA NA NA NA NA NA NA NA NA LTS-014 UNKL, LINC00254, ABCA17P, LOC652276, MRPS34, SNORA78, TSC2, UBE2I, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.431243462716506 115 0.0974505511328416 0.938962170757271 4518 0.216656898187988 2 1 1 -6.80025236997831 LTS-014 NA NA NA NA LTS-014 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.27 1 NA NA NA NA NA LTS-014 chr16 2692191 2747930 55740 * c(ERVK13-1, KCTD5, FLJ42627) 0.4 1 NA 0.566016953554913 81 0.320987932448835 1 1 0 -5.77122367290958 LTS-014 chr16 2747931 11770865 9022935 * c(LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, CLEC16A, MGRN1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, UBN1, CDIP1, NA NA NA NA NA NA NA NA NA LTS-014 HMOX2, C16orf96, PRSS41, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, PRM1, PRM2, NMRAL1, PRM3, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, TNP2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, LITAF, SEC14L5) 0.443924999207383 155 0.0739998375206269 0.927649692059683 7154 0.635557148429677 2 1 1 -6.78038965360754 LTS-014 NA NA NA NA LTS-014 chr16 11770866 12021423 250558 * c(RSL1D1, ZC3H7A, GSPT1, BCAR4, TXNDC11, SNN) 0.431593542993514 8 0.16910473297423 0.804565843354212 455 0.192693863505501 2 1 1 -6.76723498783733 LTS-014 chr16 12021424 12031362 9939 * character(0) NA 0 NA 0.883 1 NA NA NA NA NA LTS-014 chr16 12031363 14968958 2937596 * c(MIR365A, MIR4718, ERCC4, NOMO1, PARN, BFAR, CPPED1, MIR193B, MKL2, TNFRSF17, NPIPA3, SHISA9, ABCC6P2, PLA2G10, SNX29) 0.376959202388698 18 0.0852858515264298 0.904222257397827 817 0.206293321289189 2 1 1 -7.00402935867224 LTS-014 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.179 1 NA NA NA NA NA LTS-014 chr16 15068593 15123936 55344 * PDXDC1 0.294 1 NA 1.23684844034937 108 0.220234771008964 3 3 0 -5.76503580694382 LTS-014 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.732 1 NA NA NA NA NA LTS-014 chr16 15125636 28608421 13482786 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-014 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.435199508770991 175 0.0899015012906823 0.890514856179361 9689 0.236546205808599 2 1 1 -6.74611692542339 LTS-014 NA NA NA NA LTS-014 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.241 1 NA NA NA NA NA LTS-014 chr16 28616944 28712734 95791 * SULT1A1 0.444086157426035 13 0.0419534235026147 0.620672155359645 88 0.337592369031061 2 1 1 -6.83858042291534 LTS-014 chr16 28712735 28734495 21761 * character(0) NA 0 NA 1.092 1 NA NA NA NA NA LTS-014 chr16 28734496 31539386 2804891 * c(ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, NA NA NA NA NA NA NA NA NA LTS-014 KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.45166208969393 107 0.0417591337467438 0.912952135594648 6431 0.196418556360071 2 1 1 -6.90490135164251 LTS-014 NA NA NA NA LTS-014 chr16 31539387 31580530 41144 * c(YBX3P1, AHSP) 0.32 1 NA 0.963167343431229 25 0.208286261348815 2 2 0 -5.76879161156659 LTS-014 chr16 31580531 33965646 2385116 * c(CLUHP3, ZNF267, ZNF720, SLC6A10P, LOC390705, YBX3P1, NA, LINC00273, TP53TG3D) 0.306069613875477 77 0.102373804081575 0.85449479012316 545 0.332503752053296 2 1 1 -7.5471771857554 LTS-014 chr16 33965647 34682380 716734 * c(LINC01566, UBE2MP1) NA 0 NA 0.814509278008403 116 0.239951241923749 2 NA NA -5.81166952000961 LTS-014 chr16 46508169 46692726 184558 * c(ANKRD26P1, SHCBP1) 0 1 NA 0.851316871154013 269 0.327214076443345 2 2 0 -5.76572506214937 LTS-014 chr16 46692727 51170887 4478161 * c(LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, BRD7, C16orf87, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, SIAH1, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.395469986295547 24 0.15275612253201 0.831389895595984 2658 0.19959098033056 2 1 1 -6.99708353061052 LTS-014 chr16 51170888 52473263 1302376 * c(LINC00919, TOX3, C16orf97, SALL1) 0.472 1 NA 0.876993958357023 143 0.237184593034734 2 2 0 -5.76490102025554 LTS-014 chr16 52473264 53945472 1472209 * c(RPGRIP1L, TOX3, RBL2, CASC16, LOC643802, AKTIP, FTO, CHD9) 0.427106484604714 12 0.0488429766049978 0.813090367992751 745 0.1817545682766 2 1 1 -6.91387658622811 LTS-014 chr16 53945473 53967861 22389 * FTO NA 0 NA 1.525 1 NA NA NA NA NA LTS-014 chr16 53967862 58546125 4578264 * c(MIR3935, IRX5, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, ARL2BP, DKFZP434H168, AMFR, GNAO1, LOC283856, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, CRNDE, NA NA NA NA NA NA NA NA NA LTS-014 MT1IP, GINS3, NDRG4, SLC6A2, SLC12A3, FTO, IRX6, IRX3, USB1, FAM192A, NLRC5, DRC7, CAPNS2, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.43571483235221 106 0.0936395643645119 0.887742672040895 4690 0.238690328398018 2 1 1 -6.73552435067094 LTS-014 NA NA NA NA LTS-014 chr16 58546126 69678835 11132710 * c(CDH3, CDH5, MIR1538, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, NFAT5, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, DYNC1LI2, AGRP, E2F4, CNOT1, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, C16orf86, LCAT, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, NA NA NA NA NA NA NA NA NA LTS-014 DUS2, CHTF8, SLC38A7, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, APOOP5, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, SETD6, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.435000503038909 97 0.0959100895365763 0.855990373098632 7393 0.727561971774343 2 1 1 -6.74484935615671 LTS-014 NA NA NA NA LTS-014 chr16 69678836 69741010 62175 * NFAT5 0 1 NA 0.820774792981978 121 0.263738048571803 2 2 0 -5.7672042375624 LTS-014 chr16 69741011 70162858 421848 * c(MIR1972-1, WWP2, NQO1, PDXDC2P, CLEC18C, NOB1, CLEC18A, MIR140, PDPR) 0.45123966003939 3 0.0413279566395437 0.848022956238186 383 0.258077656923248 2 1 1 -6.85727690600441 LTS-014 chr16 70162859 70191100 28242 * c(CLEC18C, PDPR) 0.41013749630243 6 0.0374508566880207 1.26229398157359 97 0.437494888777213 5 3 2 -6.80371128120581 LTS-014 chr16 70191101 70208038 16938 * c(CLEC18C, PDPR) NA 0 NA 0.019 1 NA NA NA NA NA LTS-014 chr16 70208039 70874094 666056 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.244412490158525 7 0.214204619575814 0.86428283093764 1254 0.251120260960117 2 1 1 -7.16680803408535 LTS-014 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 1.102 1 NA NA NA NA NA LTS-014 chr16 70883627 71166447 282821 * HYDIN 0.37092157592952 79 0.0560246560920319 1.25724489174382 521 0.329971540690605 3 2 1 -6.85507358787171 LTS-014 chr16 71166448 71167220 773 * HYDIN 0.345894635269814 2 0.0367695526217005 1.04550628378835 22 0.303655253514595 3 2 1 -6.73332430193784 LTS-014 chr16 71167221 71218926 51706 * HYDIN 0.495 1 NA 0.970284300386879 31 0.283260740858715 2 2 0 -5.76790814363183 LTS-014 chr16 71218927 89858876 18639950 * c(VPS9D1-AS1, LOC100129617, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, DPEP1, SNAI3-AS1, LINC00311, NA NA NA NA NA NA NA NA NA LTS-014 LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, HYDIN, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, ZNF19, ZNF23, CA5A, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.437851771553396 360 0.0756088072156082 0.871885290595187 12196 0.433037515728978 2 1 1 -6.74408342342009 LTS-014 NA NA NA NA LTS-014 chr16 89858877 90161242 302366 * c(URAHP, TUBB3, PRDM7, AFG3L1P, FANCA, TCF25, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CENPBD1) NA 0 NA 0.832187214413522 793 0.168666102644117 2 NA NA -5.78607222288773 LTS-014 chr17 6004 6115 112 * DOC2B 0.11 1 NA 0.334180053444248 3 0.201212160003647 1 1 0 -5.76465014230723 LTS-014 chr17 6116 62454 56339 * c(DOC2B, RPH3AL) 0.128131629832062 3 0.0206639783197718 0.493432549657191 37 0.185253588067524 1 1 0 -7.7282748615102 LTS-014 chr17 62455 986938 924484 * c(DBIL5P, MIR3183, LOC100506388, ABR, TIMM22, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, RPH3AL) 0.0513477650634865 30 0.0204916860068248 0.915260455359008 787 0.252687567918331 2 2 0 -6.76431502279496 LTS-014 chr17 986939 994914 7976 * ABR NA 0 NA 0.517 1 NA NA NA NA NA LTS-014 chr17 994915 2699935 1705021 * c(MIR1253, PITPNA-AS1, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, HIC1, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, RILP, MIR22HG, SCARF1, SGSM2) 0.090478765393489 54 0.0388390081420615 0.518708891585004 2544 0.146511904204169 1 1 0 -6.91733283226066 LTS-014 chr17 2699936 2883588 183653 * RAP1GAP2 0.124 1 NA 0.54934319523346 37 0.173248276948042 1 1 0 -5.81262757876485 LTS-014 chr17 2883589 2966308 82720 * c(RAP1GAP2, OR1D5) 0.349568634508486 9 0.166402707643569 0.563973603925715 93 0.222030083271418 2 1 1 -7.07425275035972 LTS-014 chr17 2966309 3100802 134494 * c(OR1D2, OR1D5, OR1G1) 0.103 1 NA 0.540805676646246 57 0.640088775856477 1 1 0 -5.7663555878654 LTS-014 chr17 3100803 4930115 1829313 * c(C17orf107, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ENO3, CAMTA2, ZZEF1, SHPK, ALOX15, RNF167, OR1A2, PELP1, GP1BA, VMO1, TAX1BP3, SMTNL2, ITGAE, GLTPD2, INCA1, OR3A4P, MED11, ARRB2, ASPA, ATP2A3, OR3A1, OR3A2, P2RX1, P2RX5, MINK1, ANKFY1, PFN1, PLD2, NCBP3, PSMB6, CXCL16, OR1D4, UBE2G1, TRPV1, EMC6, OR1A1, OR1E1, OR1E2, GSG2, OR3A3, SLC25A11, NA NA NA NA NA NA NA NA NA LTS-014 ZMYND15, CAMKK1, SPATA22, TM4SF5, SPAG7) 0.0964531121193788 126 0.05208779950375 0.503935398994872 4023 0.137354503919626 1 1 0 -6.78247749478449 LTS-014 NA NA NA NA LTS-014 chr17 4930116 4937351 7236 * c(KIF1C, SLC52A1) 0.177 1 NA 0.507822364293787 56 0.126123541526841 1 1 0 -5.7647731566233 LTS-014 chr17 4937352 5045863 108512 * c(ZFP3, SLC52A1, ZNF232, USP6) 0.409295658990769 6 0.18867158415264 0.488791939598988 148 0.148532625829593 2 1 1 -7.6270014548187 LTS-014 chr17 5045864 5047964 2101 * USP6 NA 0 NA 0.448 1 NA NA NA NA NA LTS-014 chr17 5047965 5083008 35044 * c(ZNF594, USP6) 0.161563614651055 3 0.0845931439302264 0.40824378176129 51 0.125595675584354 1 1 0 -7.08677915735125 LTS-014 chr17 5083009 5085637 2629 * ZNF594 0.083 1 NA 0.428411617399449 45 0.108357423894864 1 1 0 -5.76680524918569 LTS-014 chr17 5085638 5344588 258951 * c(LOC100130950, SCIMP, NUP88, DHX33, C1QBP, RPAIN, ZNF594, RABEP1) 0.0800998830579303 11 0.0621230450579552 0.438159896505081 357 0.143540200832477 1 1 0 -6.8805560290318 LTS-014 chr17 5344589 14005580 8660992 * c(MIR744, LOC100128288, LINC00675, MIR4314, NA, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, CLEC10A, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, COX10, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, MFSD6L, SLC16A11, FBXO39, DLG4, DNAH9, DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, NA NA NA NA NA NA NA NA NA LTS-014 FGF11, NLRP1, ARHGEF15, KDM6B, WSCD1, CTDNEP1, PIK3R5, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15B, TMEM256, BCL6B, SENP3, SNORA67, LOC284023, LINC00324, LINC00670, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, LOC339166, TMEM95, ACADVL, SPEM1, SPDYE4, TMEM220, SHISA6, SLC25A35, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, MED31, DERL2, YBX2, PER1, PFAS, POLR2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 FAM64A, XAF1, BORCS6, WRAP53, DHX33, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, SLC35G6, RNF222, PIRT, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, TP53, LOC728392, ZNF18, MIS12, PHF23, CTC1, NDEL1, PITPNM3, TEKT1, TMEM107, NAA38, NEURL4, HES7, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT15P1, NTN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 STX8, FXR2, MPDU1, CD68, ACAP1, KIAA0753, ARHGAP44, HS3ST3A1) 0.0908418802425107 179 0.0437167140699255 0.514693268819926 10707 0.148220792717393 1 1 0 -7.29265820722935 LTS-014 NA NA NA NA LTS-014 chr17 14005581 15690906 1685326 * c(TVP23C-CDRT4, MIR4731, TRIM16, COX10, CDRT15, TVP23C, CDRT4, TBC1D26, CDRT1, MEIS3P1, PMP22, ZNF286A, CDRT15P2, TEKT3, MGC12916, CDRT7, HS3ST3B1) 0.131941553827311 46 0.0650050351078436 0.437732988280095 1073 0.168761899017234 1 1 0 -7.29753524625621 LTS-014 chr17 15690907 17396557 1705651 * c(FAM106CP, MIR1288, LRRC75A-AS1, ZSWIM7, ADORA2B, NA, USP32P1, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, LRRC75A, KRT16P2, MEIS3P1, TRPV2, TTC19, MED9, NT5M, ZNF287, ZNF624, SNORD49B, SNORD65, UBB, COPS3, PIGL, NCOR1, CCDC144A) 0.0974365050691178 26 0.0332858020090341 0.495457774115539 1691 0.13084482448659 1 1 0 -6.7429676551313 LTS-014 chr17 17396558 17397768 1211 * RASD1 NA 0 NA 0.775 1 NA NA NA NA NA LTS-014 chr17 17397769 18291500 893732 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, TOM1L2, DRG2, FLII, LLGL1, MYO15A, RASD1, ALKBH5, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, ATPAF2) 0.0750976400517651 42 0.029695248469229 0.538221824477215 1974 0.157990087925894 1 1 0 -7.2893328395064 LTS-014 chr17 18291501 18291544 44 * EVPLL 0.08 1 NA 1.015 1 NA NA NA NA NA LTS-014 chr17 18291545 18291618 74 * EVPLL 0.0648612531303528 2 0.0169705627484771 0.826866204847772 4 0.296345519059537 17 16 1 -6.73547385652533 LTS-014 chr17 18291619 18314964 23346 * EVPLL 0.43 1 NA 0.576802764129068 3 0.26769074196418 1 1 0 -5.7696527958097 LTS-014 chr17 18314965 18445528 130564 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.397544907057112 3 0.114605119141046 0.731301037690796 66 0.169710800218948 2 1 1 -6.88322636825331 LTS-014 chr17 18445529 18446953 1425 * CCDC144B NA 0 NA 0.404 1 NA NA NA NA NA LTS-014 chr17 18446954 18653145 206192 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, ZNF286B) 0.388067528822144 7 0.12167677714025 0.470802870961629 345 0.127235066909372 2 1 1 -8.89911408657403 LTS-014 chr17 18653146 18786021 132876 * c(FBXW10, TVP23B, PRPSAP2) NA 0 NA 0.410039969644431 151 0.169135919584216 1 NA NA -5.85086183018255 LTS-014 chr17 18786022 18793061 7040 * PRPSAP2 NA 0 NA 0.667 1 NA NA NA NA NA LTS-014 chr17 18793062 18872337 79276 * c(SLC5A10, PRPSAP2) 0.099 1 NA 0.551282470931741 69 0.109533172014354 1 1 0 -5.81965388450577 LTS-014 chr17 18872338 20924620 2052283 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.100426668998742 39 0.0757297382298504 0.512565008360981 1915 0.167870771581086 1 1 0 -6.8233673560865 LTS-014 chr17 20924621 21194769 270149 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.395 1 NA 0.498082153631577 113 0.111987100236898 1 1 0 -5.76819017602948 LTS-014 chr17 21194770 21194879 110 * MAP2K3 0.343343486634238 3 0.0545007645206316 0.470226244737018 7 0.0875565123628326 3 2 1 -6.74238018824948 LTS-014 chr17 21194880 21318629 123750 * c(KCNJ12, MAP2K3) 0.39923823162909 65 0.0758744788348595 0.635042260169087 153 0.184879575481827 2 1 1 -7.07359196468618 LTS-014 chr17 21318630 21318663 34 * KCNJ12 0.325 1 NA 0.595647862795505 3 0.105153855532421 1 1 0 -5.76447891831865 LTS-014 chr17 21318664 21320365 1702 * KCNJ12 0.296911243084214 37 0.0545891837178298 0.748473368541851 78 0.262527292715594 7 5 2 -6.76240955359347 LTS-014 chr17 21320366 21320422 57 * KCNJ12 NA 0 NA 0.489 1 NA NA NA NA NA LTS-014 chr17 21320423 21454413 133991 * c(C17orf51, KCNJ12) NA 0 NA 0.489656870520118 157 0.0894563958480617 1 NA NA -5.76441015680456 LTS-014 chr17 21454414 22066835 612422 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.209382150244808 8 0.103035274819563 0.824824941528712 53 0.503175904919668 4 3 1 -7.5449694637072 LTS-014 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.724 1 NA NA NA NA NA LTS-014 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.058 1 NA 0.913119184058149 17 0.245131117375747 2 2 0 -5.76452311547266 LTS-014 chr17 25630389 27975182 2344794 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-014 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.0706276567475171 37 0.0684010211890122 0.919900367770539 4167 0.220201134363563 2 2 0 -6.81429195099004 LTS-014 NA NA NA NA LTS-014 chr17 27975183 27975281 99 * SSH2 NA 0 NA 0.904 1 NA NA NA NA NA LTS-014 chr17 27975282 34433730 6458449 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-014 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.0517741846362374 81 0.0330230886307754 0.849271237332626 5995 0.245447781337291 2 2 0 -6.83073157185266 LTS-014 NA NA NA NA LTS-014 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.08 1 NA NA NA NA NA LTS-014 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.463040195653924 39 0.48967910393574 1 NA NA -5.76520970932516 LTS-014 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.927 1 NA NA NA NA NA LTS-014 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0519980336565842 16 0.0515538553359494 0.862564791849845 1545 0.256002095574977 2 2 0 -6.74160046278311 LTS-014 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.438 1 NA NA NA NA NA LTS-014 chr17 36351756 36398345 46590 * LOC440434 NA 0 NA 0.399386862986027 63 0.133713367772045 1 NA NA -5.82860919557434 LTS-014 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.638 1 NA NA NA NA NA LTS-014 chr17 36421727 38519618 2097892 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, CISD3, GSDMA, GRB7, SOCS7, MSL1, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, THRA, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, NA NA NA NA NA NA NA NA NA LTS-014 MIEN1, MRPL45, FBXL20, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.0483111945583383 79 0.0197162112003314 0.921503148049167 4465 0.241711467773926 2 2 0 -6.84301012636875 LTS-014 NA NA NA NA LTS-014 chr17 38519619 38991053 471435 * c(CCR7, GJD3, KRT222, KRT25, TMEM99, KRT28, KRT24, KRT27, IGFBP4, KRT26, KRT10, RARA, SMARCE1, TOP2A, TNS4) 0.0525840635169961 20 0.018653347378448 0.842795357750221 972 0.26805444894029 2 2 0 -6.75175183777764 LTS-014 chr17 38991054 39018961 27908 * c(TMEM99, KRT12) 0.039 1 NA 0.835522028429704 51 0.342606445459784 2 2 0 -5.76483207879723 LTS-014 chr17 39018962 39344703 325742 * c(KRTAP4-9, KRTAP4-7, KRT40, KRT23, KRT12, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) NA 0 NA 0.868967469478008 658 0.192251785089277 2 NA NA -5.76562188291903 LTS-014 chr17 39344704 39406713 62010 * c(KRTAP9-1, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.286139459245467 9 0.0597448277631164 1.22453955615521 50 0.381570925281799 4 3 1 -6.83443318887151 LTS-014 chr17 39406714 39471313 64600 * c(KRTAP9-7, KRTAP16-1, KRTAP9-6, KRTAP29-1, KRTAP9-9, KRTAP17-1, KRTAP9-4) 0 1 NA 0.795891348273388 107 0.394160987602041 2 2 0 -5.76705476162136 LTS-014 chr17 39471314 40467248 995935 * c(LOC100505782, EIF1, P3H4, NT5C3B, CNP, LINC00974, ZNF385C, KCNH4, GAST, KAT2A, KRT42P, NKIRAS2, HCRT, KLHL10, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, ACLY, KLHL11, RAB5C, FKBP10, STAT3, STAT5A, STAT5B, DNAJC7, DHX58, TTC25, KRTAP17-1, GHDC, KRT38, KRT37, KRT36, HAP1, HSPB9) 0.0515459240840936 26 0.0215623603674409 0.945921944596839 2500 0.245285308913819 2 2 0 -6.7967597180586 LTS-014 chr17 40467249 41361960 894712 * c(RAMP2-AS1, MIR5010, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, CNTD1, RUNDC1, FAM134C, EZH1, G6PC, TUBG2, CCR10, PTRF, COA3, PSMC3IP, AOC2, HSD17B1, IFI35, LINC00671, NBR1, NAGLU, ATP6V0A1, RPL27, WNK4, BRCA1, STAT3, MLX, TUBG1, PLEKHH3, COASY, AARSD1, RND2, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.0517815147912343 23 0.0216843142885821 1.03025316750769 2185 0.275060427341183 2 2 0 -6.91270565581114 LTS-014 chr17 41361961 41369443 7483 * c(TMEM106A, NBR1) NA 0 NA 0.953653541492778 31 0.116062941767012 2 NA NA -5.76642948927454 LTS-014 chr17 41369444 41369652 209 * TMEM106A NA 0 NA 1.406 1 NA NA NA NA NA LTS-014 chr17 41369653 41423944 54292 * c(LINC00854, TMEM106A) 0.067 1 NA 1.15720091467126 15 0.330739604091022 3 3 0 -5.76719889423651 LTS-014 chr17 41423945 41466055 42111 * LINC00910 0.335368541059107 9 0.168668313562447 1.18007104094117 43 0.456736560518518 3 2 1 -6.73588493846792 LTS-014 chr17 41466056 41466073 18 * LINC00910 0.03 1 NA 1.171 1 NA NA NA NA NA LTS-014 chr17 41466074 41847210 381137 * c(LINC00910, MIR2117, DHX8, DUSP3, ETV4, ARL4D, MEOX1, SOST) 0.0322843291032417 6 0.0163187009286891 1.37178568166232 297 0.358974947770402 3 3 0 -6.81824741665307 LTS-014 chr17 41847211 41851988 4778 * DUSP3 NA 0 NA 0.851 1 NA NA NA NA NA LTS-014 chr17 41851989 44360815 2508827 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DUSP3, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0417130252878359 147 0.0230084704413223 1.08577499033484 3898 0.4305659418622 3 3 0 -6.9498576419792 LTS-014 chr17 44360816 44363223 2408 * character(0) NA 0 NA 0.587 1 NA NA NA NA NA LTS-014 chr17 44363224 44364298 1075 * character(0) 0.0406540004435252 4 0.017156145643277 0.682345322098621 16 0.254082327537093 3 3 0 -6.75001582077785 LTS-014 chr17 44364299 44782233 417935 * character(0) NA 0 NA 0.476196645621047 47 0.290052580642657 1 NA NA -5.76671726578604 LTS-014 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.19 1 NA NA NA NA NA LTS-014 chr17 44788332 45214482 426151 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.283 1 NA 0.986456835660919 283 0.233212734881264 2 2 0 -5.82247420965518 LTS-014 chr17 45214483 45258971 44489 * CDC27 0.243273378378201 9 0.14350009678665 0.783272185433578 81 0.418941826525289 4 3 1 -6.83180915764067 LTS-014 chr17 45258972 45385012 126041 * c(ITGB3, MYL4, CDC27) 0.031 1 NA 0.923311367872966 135 0.286500989572429 2 2 0 -5.76631867386915 LTS-014 chr17 45385013 47906206 2521194 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, NA NA NA NA NA NA NA NA NA LTS-014 FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1) 0.0488847066798665 58 0.0240811795037451 0.990869205822676 3543 0.274170261630074 2 2 0 -7.03200348171327 LTS-014 NA NA NA NA LTS-014 chr17 47906207 48768660 862454 * c(CHAD, KAT7, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, CACNA1G-AS1, TAC4, LOC284080, ITGA3, HILS1, MRPL27, PDK2, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, FLJ45513, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G) 0.0422937263401874 52 0.0194815146168029 1.12226825720654 2254 0.400432067213277 3 3 0 -6.81244572851184 LTS-014 chr17 48768661 55038193 6269533 * c(TOM1L1, MIR3614, C17orf112, TOB1, WFIKKN2, COX11, ANKFN1, MMD, MTVR2, STXBP4, HLF, C17orf67, TOB1-AS1, NME1, NME2, UTP18, LUC7L3, MBTD1, LINC00483, TMEM100, CA10, PCTP, NME1-NME2, TRIM25, COIL, KIF2B, DGKE, ABCC3, SPAG9, ANKRD40, NOG) 0.0419157281591657 43 0.0268468648602387 0.992838935317414 1893 0.267120346141454 2 2 0 -7.53128754499198 LTS-014 chr17 55038194 56616680 1578487 * c(TSPOAP1-AS1, MIR4736, HSF5, OR4D2, MSI2, DYNLL2, OR4D1, RNF126P1, LPO, CUEDC1, MIR142, MPO, MRPS23, SEPT4, RNF43, MKS1, MSX2P1, SCPEP1, SRSF1, SUPT4H1, VEZF1, COIL, AKAP1, EPX, MTMR4, TSPOAP1) 0.0443488613369308 23 0.0258391956457734 1.11140586270391 1354 0.283094160620789 3 3 0 -6.98223708816112 LTS-014 chr17 56616681 56618001 1321 * SEPT4 NA 0 NA 0.964 1 NA NA NA NA NA LTS-014 chr17 56618002 60685597 4067596 * c(MIR4729, MIR4737, APPBP2, TLK2, CLTC, C17orf64, EFCAB3, PPM1E, C17orf47, GDPD1, METTL2A, NACA2, SKA2, YPEL2, C17orf82, MIR21, MIR301A, TBC1D3P2, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, BCAS3, SMG8, PRR11, TEX14, INTS2, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, TBX2, CA4, MIR454, DHX40, VMP1, BRIP1, USP32, PPM1D, TBX4, MED13) 0.0401810785163281 37 0.0329254093760819 0.999501217385002 2968 0.33307814428858 2 2 0 -7.17752376326403 LTS-014 chr17 60685598 60689667 4070 * TLK2 NA 0 NA 1.079 1 NA NA NA NA NA LTS-014 chr17 60689668 62271061 1581394 * c(DCAF7, TLK2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, CYB561, MARCH10, ACE, ERN1, TANC2, GH1, GH2, ICAM2, MAP3K3, TACO1, TEX2, CCDC47, PSMC5, SCN4A, SMARCD2, SNORA50C, SNORD104, LOC729683, LIMD2, KCNH6, STRADA, PRR29, CD79B, MRC2) 0.0471263093208533 32 0.0326428467439405 1.08732920427247 1852 0.271449317988215 3 3 0 -7.08772458350253 LTS-014 chr17 62271062 67512916 5241855 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, LOC146880, DDX5, CEP112, AMZ2P1, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, MILR1, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, PSMD12, SMURF2, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, HELZ) 0.0417686597368266 44 0.0275675894360572 1.00137081522131 3300 0.279913673269743 2 2 0 -7.45279821562663 LTS-014 chr17 67512917 67513003 87 * MAP2K6 0.035 1 NA 2.063 1 NA NA NA NA NA LTS-014 chr17 67513004 72744798 5231795 * c(CD300LD, LINC00673, MIR3615, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, CDC42EP4, LINC00469, RAB37, CD300E, GPR142, KCNJ2, KCNJ16, BTBD17, KCNJ2-AS1, LINC00511, LOC400620, SDK2, C17orf80, GPRC5C, MAP2K6, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, SLC9A3R1, COG1, TTYH2) 0.0409560479044951 51 0.0151960779253637 1.14568971311435 2017 1.2744852590718 3 3 0 -6.77585534683156 LTS-014 chr17 72744799 72889676 144878 * c(MIR3615, FDXR, NAT9, FADS6, GRIN2C, TMEM104, SLC9A3R1) 0.434 1 NA 1.15077357989633 351 0.22784595239323 3 3 0 -5.78190464902735 LTS-014 chr17 72889677 73038746 149070 * c(ATP5H, USH1G, KCTD2, FADS6, HID1, CDR2L, MRPL58, OTOP3, OTOP2) 0.102312113796928 9 0.146965793450192 1.14326771092321 372 0.329061250325991 2 2 0 -6.8494244964633 LTS-014 chr17 73038747 73049228 10482 * c(ATP5H, KCTD2) 0.036 1 NA 1.10633448741695 19 0.437166514503923 3 3 0 -5.7650711919976 LTS-014 chr17 73049229 80363278 7314050 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, SLC25A10, NOTUM, TMC8, NA NA NA NA NA NA NA NA NA LTS-014 AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, GCGR, UTS2R, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, SAP30BP, H3F3B, NT5C, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, ZACN, ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.0415870669978394 267 0.0172636756327626 1.11506962191088 11615 0.296000986657819 3 3 0 -7.54255344283626 LTS-014 NA NA NA NA LTS-014 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 2.18378845056361 39 0.702701396299789 5 NA NA -5.76450646266925 LTS-014 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.967 1 NA NA NA NA NA LTS-014 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0424460988142398 10 0.0169246696997148 1.0843682700866 862 0.276005517715712 3 3 0 -6.90501051031463 LTS-014 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.21894184806033 13 0.188218231221374 3 NA NA -5.76552030643451 LTS-014 chr18 116845 166819 49975 * c(ROCK1P1, USP14) 0.465 1 NA 0.964190422651021 61 0.288822446261507 2 2 0 -5.76724597434102 LTS-014 chr18 166820 5132835 4966016 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.42042380952164 57 0.0572856635041244 0.942594516602718 1928 0.265859601929986 2 1 1 -6.93971345957907 LTS-014 chr18 5132836 5132925 90 * character(0) NA 0 NA 1.037 1 NA NA NA NA NA LTS-014 chr18 5132926 8546051 3413126 * c(LINC01387, LOC100192426, MIR4317, MIR3976, LINC00526, EPB41L3, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.398412139542001 29 0.121411170877284 1.06139779596106 1306 0.319133534124207 2 1 1 -7.39945865522632 LTS-014 chr18 8546052 8609754 63703 * RAB12 NA 0 NA 0.894 1 NA NA NA NA NA LTS-014 chr18 8609755 14866503 6256749 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.411252095559438 101 0.102074625196034 0.976536349146827 3355 0.562494027179293 2 1 1 -6.87938182624215 LTS-014 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.1856017956155 33 0.345541899840605 3 NA NA -5.76810248832744 LTS-014 chr18 18529727 18691811 162085 * ROCK1 NA 0 NA 0.750583250527811 197 0.155023399950684 2 NA NA -5.86826131470335 LTS-014 chr18 18691812 18963485 271674 * c(ROCK1, GREB1L) NA 0 NA 1.378 1 NA NA NA NA NA LTS-014 chr18 18963486 19065667 102182 * GREB1L 0 1 NA 1.29044958508315 97 0.732297556850874 3 3 0 -5.76442712734878 LTS-014 chr18 19065668 19450850 385183 * c(MIR320C1, ESCO1, ABHD3, MIR1-2, MIR133A1, MIB1, SNRPD1, GREB1L) 0.177681307459373 4 0.199747340407826 1.18699901098653 475 0.440112998400768 4 3 1 -6.97920832441947 LTS-014 chr18 19450851 19750998 300148 * c(GATA6-AS1, GATA6, MIB1) NA 0 NA 0.567 1 NA NA NA NA NA LTS-014 chr18 19750999 77926862 58175864 * c(CDH2, ZSCAN30, SNORD58C, PARD6G-AS1, LOC100131655, LINC01630, MIR302F, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, OSBPL1A, HAUS1, ALPK2, LOXHD1, NA NA NA NA NA NA NA NA NA LTS-014 INO80C, TTC39C, FAM69C, PSMA8, STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, DSG4, AQP4-AS1, ANKRD29, CYB5A, C18orf54, TCEB3C, DCC, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, ZNF521, TPGS2, SETBP1, KCNG2, CABYR, GATA6, SNORD58B, SNORD58A, SALL3, CDH20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, C18orf8, RAX, CXXC1, LOC339298, CPLX4, AQP4, CCDC178, ATP9B, OACYLP, LAMA3, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, NPC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, RBBP8, HRH4, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PCAT18, LOC729950, ZNF24, ZNF236, CCDC102B, RBFA, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, PARD6G, CNDP1, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, CABLES1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.0973143985792411 320 0.0453433771945532 0.489232840719361 19738 0.173305680350353 1 1 0 -6.73479449624619 LTS-014 NA NA NA NA LTS-014 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.474880165160313 17 0.0736801513698388 1 NA NA -5.77252050011821 LTS-014 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.106 1 NA 0.699658143411411 17 0.267412107605691 2 2 0 -5.84246978915489 LTS-014 chr19 282754 4446432 4163679 * c(C19orf71, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, MIR4746, MIR4745, EBI3, FSTL3, APC2, ABCA7, HMG20B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, TMIGD2, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, SBNO2, ZFR2, PIP5K1C, ARHGAP45, NA NA NA NA NA NA NA NA NA LTS-014 CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, ODF3L2, MKNK2, GPX4, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MATK, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, STAP2, BTBD2, RNF126, CCDC94, MAP2K2, PRTN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 AZU1, NCLN, SPPL2B, SHD, PTBP1, WDR18, REXO1, ZNF77, CACTIN, CELF5, HCN2, RPS15, SGTA, LINGO3, SH3GL1, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, FSD1, TLE6, PLPPR3, ZNF556, UBXN6, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, CREB3L3, LMNB2, RAX2, MUM1, MPND, ATCAY, PLPP2, S1PR4, AP3D1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, APBA3, CDC34) 0.0988685696437621 200 0.0489109497456871 0.521991711050581 8131 0.15770626271387 1 1 0 -7.11853274935607 LTS-014 NA NA NA NA LTS-014 chr19 4446433 4454000 7568 * UBXN6 0.105 1 NA 0.59530278482833 37 0.169923777294674 1 1 0 -5.77040854167068 LTS-014 chr19 4454001 6743634 2289634 * c(LOC100128568, DPP9-AS1, MIR3940, MIR4747, PLIN3, TUBB4A, SEMA6B, LRG1, ACER1, C19orf70, TNFAIP8L1, NDUFA11, TICAM1, ZNRF4, PRR22, KDM4B, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, MIR7-3HG, SLC25A41, UHRF1, GTF2F1, HSD11B1L, VMAC, MIR7-3, MLLT1, PLIN5, NRTN, FEM1A, MYDGF, PSPN, GPR108, DUS3L, PTPRS, RFX2, SAFB, ARRDC5, C3, PLIN4, SLC25A23, DENND1C, UBXN6, ACSBG2, CLPP, CAPS, ALKBH7, HDGFRP2, RANBP3, NA NA NA NA NA NA NA NA NA LTS-014 KHSRP, TNFSF14, TNFSF9, DPP9, CRB3, TRIP10, LONP1, SAFB2, CD70) 0.124705332025785 55 0.0907978959693335 0.520985997267149 3186 0.130925422125175 1 1 0 -7.07402976214406 LTS-014 NA NA NA NA LTS-014 chr19 6743635 6753613 9979 * c(SH2D3A, TRIP10) NA 0 NA 0.607422648759654 61 0.133349102209611 1 NA NA -5.7800145967056 LTS-014 chr19 6753614 6754003 390 * SH2D3A NA 0 NA 0.881 1 NA NA NA NA NA LTS-014 chr19 6754004 6828040 74037 * c(SH2D3A, VAV1) 0.3 1 NA 1.28721615583183 89 0.309967138856012 3 3 0 -5.76445348135112 LTS-014 chr19 6828041 8807932 1979892 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, KANK3, ACTL9, MBD3L5, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, VAV1, ZNF557, CERS4, NA NA NA NA NA NA NA NA NA LTS-014 LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B, PEX11G) 0.341738607702332 108 0.0700005952355645 1.37252084660787 3207 0.317936995384067 3 2 1 -6.79811303164077 LTS-014 NA NA NA NA LTS-014 chr19 8807933 9875669 1067737 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, ZNF846, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, MBD3L1, ZNF561, MUC16) 0.29744905630818 21 0.11434734052751 1.24916710551193 2027 0.27114499686865 3 2 1 -6.84043803065612 LTS-014 chr19 9875670 11725723 1850054 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, ZNF846, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, PIN1, S1PR5, ACP5, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, NA NA NA NA NA NA NA NA NA LTS-014 SLC44A2, DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, OLFM2, RAB3D, KEAP1) 0.32816027212398 98 0.0809634885099579 1.36061512547301 4073 0.425441196402337 3 2 1 -6.78610434636211 LTS-014 NA NA NA NA LTS-014 chr19 11725724 11727481 1758 * ZNF627 NA 0 NA 1.033 1 NA NA NA NA NA LTS-014 chr19 11727482 12090190 362709 * c(ZNF441, ZNF491, ZNF440, ZNF627, ZNF763, ZNF833P, ZNF823, ZNF69, ZNF700, ZNF439) NA 0 NA 1.11849276635182 491 0.225020405649266 3 NA NA -5.83707480796714 LTS-014 chr19 12090191 12125497 35307 * ZNF763 NA 0 NA 6.891 1 NA NA NA NA NA LTS-014 chr19 12125498 12361728 236231 * c(ZNF625-ZNF20, ZNF433, ZNF844, ZNF788, ZNF44, ZNF878, ZNF20, ZNF136, ZNF625) NA 0 NA 1.56055028758312 549 0.759388455902581 4 NA NA -5.76548800193698 LTS-014 chr19 12361729 12382632 20904 * ZNF44 NA 0 NA 1.039 1 NA NA NA NA NA LTS-014 chr19 12382633 12741553 358921 * c(ZNF443, ZNF563, ZNF791, ZNF564, ZNF709, ZNF44, ZNF490, ZNF442, ZNF799) 0.393217674883444 17 0.0651489244189125 1.14410184525321 639 0.275743435225655 3 2 1 -7.0726403114576 LTS-014 chr19 12741554 19770774 7029221 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, NA NA NA NA NA NA NA NA NA LTS-014 SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 IL27RA, GDF15, TECR, IER2, ADGRE5) 0.336611473124292 308 0.0640617975307622 1.35066388038123 12453 0.421497785523295 3 2 1 -6.82264133863445 LTS-014 NA NA NA NA LTS-014 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.921 1 NA NA NA NA NA LTS-014 chr19 19772755 21281681 1508927 * c(ZNF737, MIR1270, ZNF714, ZNF626, LINC00663, ZNF506, ZNF253, ATP13A1, ZNF826P, ZNF14, ZNF85, ZNF90, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.339020339592912 19 0.0857114361820969 1.20075181907035 532 0.444009024416421 3 2 1 -6.75278577391456 LTS-014 chr19 21281682 21299565 17884 * ZNF714 NA 0 NA 0.883 1 NA NA NA NA NA LTS-014 chr19 21299566 24115369 2815804 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF726, ZNF708, ZNF43, ZNF91, ZNF99, ZNF208) 0.329992899619583 16 0.163653177482138 0.843369382041113 938 0.210281350636879 2 1 1 -7.03705137865172 LTS-014 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.837459263640013 91 0.16047922889266 2 NA NA -5.77888914387655 LTS-014 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.053 1 NA 1.19347740511723 5 1.66486536993236 3 3 0 -5.76565136946384 LTS-014 chr19 29567135 32102296 2535162 * c(THEG5, POP4, LOC284395, VSTM2B, TSHZ3, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.0518751182154154 4 0.0255147016443461 1.00732678468909 537 0.217343342653617 2 2 0 -7.26104900756044 LTS-014 chr19 32102297 32130936 28640 * character(0) NA 0 NA 1.206 1 NA NA NA NA NA LTS-014 chr19 32130937 33980870 1849934 * c(CEBPA, CEBPG, SLC7A9, WDR88, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12) 0.0660897986699451 41 0.068332115793238 1.33362685063281 1189 0.514641937278843 3 3 0 -6.8404408252051 LTS-014 chr19 33980871 35260460 1279590 * c(SCGB2B3P, UBA2, WTIP, ZNF599, LSM14A, GPI, SCGB2B2, ZNF181, PEPD, ZNF302, SCGB1B2P, CHST8, KCTD15, PDCD2L, KIAA0355) 0.0417234202528212 8 0.0170796453626615 1.00242705788327 784 0.299771772355699 2 2 0 -7.21419758564703 LTS-014 chr19 35260461 35843365 582905 * c(HPN-AS1, LINC00904, MIR5196, ZNF792, ZNF599, FAM187B, LGI4, FFAR1, HPN, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, ZNF30, CD22) 0.031906304429511 17 0.0125252685776065 1.37292499770141 945 0.310603464981516 4 4 0 -6.89568821664433 LTS-014 chr19 35843366 35851196 7831 * c(FFAR1, FFAR3) NA 0 NA 1.30420512825465 42 1.47228204849261 3 NA NA -5.76441126080057 LTS-014 chr19 35851197 35863609 12413 * FFAR3 NA 0 NA 0.0951292533820471 39 0.154759056995051 0 NA NA -5.76453368540805 LTS-014 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.552 1 NA NA NA NA NA LTS-014 chr19 35863628 36643791 780164 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, GAPDHS, ZBTB32, WDR62, FFAR2, APLP1, SBSN, KRTDAP, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, PRODH2, SDHAF1, OVOL3, TYROBP, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ALKBH6, DMKN, KMT2B) 0.0356197323844 34 0.0198172578240503 1.36176608987133 2305 0.328498159934429 3 3 0 -6.7613712116056 LTS-014 chr19 36643792 36673361 29570 * ZNF565 NA 0 NA 1.124 1 NA NA NA NA NA LTS-014 chr19 36673362 38262385 1589024 * c(LOC100134317, LINC00665, ZNF571-AS1, ZNF573, ZNF420, ZNF565, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, ZNF345, ZFP82, ZNF790-AS1, LOC284412, HKR1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, ZFP14, ZNF529, LOC644189, LOC728752, ZNF146, ZNF527, ZNF607, ZNF382, ZNF566, ZNF461, ZNF585B) 0.0344872317341619 33 0.0241949938473381 1.24402874801293 1945 0.352604415752957 3 3 0 -6.75108368635474 LTS-014 chr19 38262386 39443500 1181115 * c(LOC100631378, SPINT2, MAP4K1, FBXO17, RASGRP4, ZNF573, RINL, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, HNRNPL, LGALS4, LGALS7, SPRED3, NFKBIB, SARS2, PSMD8, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, LOC644554, LGALS7B, ACTN4, DPF1, WDR87, YIF1B, KCNK6, PPP1R14A) 0.0329926697838712 52 0.0184185050234852 1.37200762442008 2529 0.534819738268408 3 3 0 -6.79246722542362 LTS-014 chr19 39443501 39516069 72569 * c(FBXO17, FBXO27) NA 0 NA 3.904 1 NA NA NA NA NA LTS-014 chr19 39516070 40384193 868124 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, CLC, EID2B, FBXO27, LGALS16, EID2, FBL, IFNL2, IFNL3, IFNL1, LGALS13, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS17A, PAF1, SAMD4B, MED29, LGALS14, LRFN1, RPS16, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.0480207797131327 35 0.0873083687884741 4.77691116214356 1368 1.3785836493509 17 16 1 -6.78934355378879 LTS-014 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.045 1 NA NA NA NA NA LTS-014 chr19 40389650 40407945 18296 * FCGBP 0.0790988372384155 2 0.0558614357137373 0.701392712251689 49 1.90901044392114 14 13 1 -6.74599263063626 LTS-014 chr19 40407946 40408044 99 * FCGBP NA 0 NA 2.799 1 NA NA NA NA NA LTS-014 chr19 40408045 40487240 79196 * c(PSMC4, FCGBP) 0.0351886658614144 4 0.0218993911635309 3.00435845259583 170 0.825546256285478 3 3 0 -6.79454657519768 LTS-014 chr19 40487241 40504128 16888 * c(ZNF546, PSMC4) NA 0 NA 5.419 1 NA NA NA NA NA LTS-014 chr19 40504129 40698277 194149 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10) 0 1 NA 5.36729372166068 363 1.41594054023747 13 13 0 -5.76446789415673 LTS-014 chr19 40698278 41040254 341977 * c(C19orf47, HIPK4, TTC9B, AKT2, PLD3, SERTAD3, SERTAD1, MAP3K10, PRX, SPTBN4, BLVRB, MIR641, CNTD2) 0.00608059065428617 15 0.00188224789622864 6.69147623649736 782 1.8070964799448 20 20 0 -6.73595369958345 LTS-014 chr19 41040255 41055068 14814 * SPTBN4 NA 0 NA 4.335 1 NA NA NA NA NA LTS-014 chr19 41055069 41135420 80352 * c(SPTBN4, LTBP4, SHKBP1) 0.00997984557680373 9 0.002 5.83062519632693 394 1.47040399517391 12 12 0 -6.73805671376562 LTS-014 chr19 41135421 41173371 37951 * c(LTBP4, NUMBL) NA 0 NA 0.473 1 NA NA NA NA NA LTS-014 chr19 41173372 41209689 36318 * c(COQ8B, NUMBL) 0.058 1 NA 0.501210997441206 97 0.124600916193065 1 1 0 -5.76517652941795 LTS-014 chr19 41209690 41211056 1367 * COQ8B 0.218 1 NA 0.506823752745291 5 0.175512962484256 1 1 0 -5.76444181246594 LTS-014 chr19 41211057 42637785 1426729 * c(ERICH4, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, LYPD4, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, C19orf54, GRIK5, CYP2S1, B3GNT8, CEACAM6, ATP1A3, RAB4B, POU2F2, ATP5SL, AXL, EXOSC5, BCKDHA, RPS19, DMRTC2, TMEM91, ZNF574, SNRPA, TGFB1, COQ8B, ITPKC, B9D2, MIA, CEACAM21, CCDC97, ARHGEF1, CD79A) 0.103718419531058 51 0.0499308934192756 0.519678371461717 2272 0.157087540428515 1 1 0 -6.85861765391675 LTS-014 chr19 42637786 42703620 65835 * c(LOC100505622, DEDD2) NA 0 NA 0.094 1 NA NA NA NA NA LTS-014 chr19 42703621 42947085 243465 * c(LIPE-AS1, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GSK3A, LIPE, PAFAH1B3, CNFN) 0.389 1 NA 0.105951032464502 886 0.0323243430819512 0 0 0 -6.68532877044095 LTS-014 chr19 42947086 43009436 62351 * c(LIPE-AS1, CXCL17) NA 0 NA 0.301 1 NA NA NA NA NA LTS-014 chr19 43009437 52133661 9124225 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, ZNF234, CGB3, PPP1R13L, CD3EAP, NA NA NA NA NA NA NA NA NA LTS-014 RUVBL2, CEACAM8, KDELR1, KLK11, CLASRP, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CLDND2, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, CRX, VSIG10L, C19orf84, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, CADM4, ADM5, EMP3, ERCC1, ERCC2, ETFB, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, SIGLEC7, LYPD3, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, GPR4, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, SLC6A16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIM2, SIGLEC16, LOC400710, IGLON5, BCAM, MIR150, KLK14, KLK12, PSG8, MIR330, IGFL4, MYBPC2, NKG7, NOVA2, NPAS1, NTF4, NUCB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, SMG9, IRGC, CABP5, PRRG2, KLK7, KLK6, KLK10, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, MEIS3, CEACAM19, SLC17A7, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, KLKP1, RPL18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 RPS11, RRAS, RTN2, CLEC11A, CEACAM1, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF175, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ZNF576, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, SIGLEC10, SIGLEC12, PGLYRP1, EXOC3L2, CTU1, CYTH2, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34) 0.102770744856429 330 0.0571533506414621 0.518107783761278 15835 0.182796083521858 1 1 0 -7.21794574781682 LTS-014 NA NA NA NA LTS-014 chr19 52133662 52133675 14 * SIGLEC5 NA 0 NA 0.677 1 NA NA NA NA NA LTS-014 chr19 52133676 52196631 62956 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) NA 0 NA 0.925837165687283 39 0.380161591113075 2 NA NA -5.76501862643046 LTS-014 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.612 1 NA NA NA NA NA LTS-014 chr19 52196825 55258830 3062006 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR4752, MIR371B, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, BIRC8, LENG8, KIR3DL3, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, CDC42EP5, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, LILRA4, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, LILRA5, NA NA NA NA NA NA NA NA NA LTS-014 KIR2DL1, KIR2DL3, ZNF808, ZNF761, LAIR1, LAIR2, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, PRKCG, TTYH1, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRP2, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, KIR3DX1, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, LENG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ZNF432) 0.10459362222521 142 0.0670628141137803 0.488467850542889 5226 0.152406386933689 1 1 0 -6.73742806833596 LTS-014 NA NA NA NA LTS-014 chr19 55258831 55258875 45 * c(KIR2DL1, KIR2DL3) NA 0 NA 0.439 1 NA NA NA NA NA LTS-014 chr19 55258876 55298011 39136 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.169495451308903 5 0.0295854694064502 0.157235978213446 39 0.136617910397193 1 1 0 -10.2997773016205 LTS-014 chr19 55298012 59082605 3784594 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, NA NA NA NA NA NA NA NA NA LTS-014 FKBP1AP1, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.110070912847481 170 0.0721778992991127 0.508739502208216 7444 0.455801038876419 1 1 0 -6.76270318642353 LTS-014 NA NA NA NA LTS-014 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.490139803173602 9 0.03067164814613 1 NA NA -5.76441108357966 LTS-014 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.406 1 NA 0.760829216206176 43 0.316345573060039 2 2 0 -5.77357570530869 LTS-014 chr20 138126 25398748 25260623 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SDCBP2-AS1, LINC00658, FKBP1A-SDCBP2, SIRPB1, SEC23B, NOP56, CENPB, RBCK1, POLR3F, RBBP9, DSTN, CHGB, RNF24, SLC52A3, HSPA12B, TMC2, TBC1D20, SIRPD, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, C20orf96, MACROD2, SRXN1, LINC00261, NA NA NA NA NA NA NA NA NA LTS-014 BANF2, DEFB127, SCP2D1, ISM1, CST11, DEFB129, SIRPA, STK35, CSNK2A1, ADRA1D, CST1, CST2, CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, FKBP1A, XRN2, UBOX5, BTBD3, CD93, PLCB1, PRND, FLRT3, LAMP5, DEFB128, SPEF1, C20orf194, CFAP61, ABHD12, SDCBP2, SNX5, GNRH2, SIRPB2, LOC284788, LOC284798, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, RSPO4, TGM6, INSM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 ITPA, LINC00493, DEFB132, C20orf202, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ANGPT4, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, TMEM74B, SIRPG, FERMT1, KIF16B, TASP1, KIZ, NSFL1C, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, TRIB3, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NAPB, ANKEF1, GFRA4, RAD21L1, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SOX12, SSTR4, SNORA51, SNORD17, SNORD110, TCF15, TGM3, THBD, LINC01433, ZNF133, NDUFAF5, ZNF343, SYNDIG1, NRSN2, PANK2, ADAM33, SEL1L2, MKKS, FAM110A, SLC4A11, MCM8, ACSS1, ATRN, CST7, ZCCHC3, SCRT2, CDS2, GGTLC1, MGME1, DTD1, PSMF1, ENTPD6, SNPH, LZTS3, RASSF2, GINS1, CDC25B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SLC23A2) 0.446680677601554 351 0.0776533602817313 0.910518514978425 14053 0.283620079170715 2 1 1 -6.93453754058489 LTS-014 NA NA NA NA LTS-014 chr20 25398749 25752615 353867 * c(NANP, NINL, ZNF337, FAM182B, GINS1) 0.294 1 NA 0.907699202627749 395 0.268958948025883 2 2 0 -5.76678784365889 LTS-014 chr20 25752616 26188981 436366 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.283558212036933 28 0.087663279251352 0.891780172602352 87 0.598243624824489 4 3 1 -7.03465651261577 LTS-014 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.566951229717277 5 0.172124373637205 1 NA NA -5.76442667740737 LTS-014 chr20 29625845 29625876 32 * FRG1BP 0.3 1 NA 1.004 1 NA NA NA NA NA LTS-014 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.349231014200373 19 0.0941879730592279 0.821924061445584 42 0.330893307506182 3 2 1 -6.76165875986443 LTS-014 chr20 29652192 29965014 312823 * c(DEFB118, DEFB115, DEFB116, DEFB119, FRG1BP) 0.033 1 NA 0.894431066607551 59 0.406554677773939 2 2 0 -5.76462459266529 LTS-014 chr20 29965015 34220857 4255843 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, CEP250, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, CCM2L, SUN5, C20orf173, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, C20orf203, REM1, GSS, NA NA NA NA NA NA NA NA NA LTS-014 HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, SPAG4, MIR644A, BPIFB2, HM13, PDRG1, GDF5, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CPNE1, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.0509350464891815 100 0.0230234202235002 0.924167888001106 6330 0.276423949083213 2 2 0 -6.82342194798933 LTS-014 NA NA NA NA LTS-014 chr20 34220858 34236840 15983 * CPNE1 NA 0 NA 0.755 1 NA NA NA NA NA LTS-014 chr20 34236841 34389607 152767 * c(RBM12, ROMO1, PHF20, CPNE1, NFS1, RBM39) NA 0 NA 0.780257120238964 393 0.177648874482129 2 NA NA -5.80790622780825 LTS-014 chr20 34389608 34430498 40891 * PHF20 NA 0 NA 0.902 1 NA NA NA NA NA LTS-014 chr20 34430499 45022830 10592332 * c(ADA, ACOT8, LOC100287792, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, LINC00489, SGK2, MYL9, WFDC2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, SLC32A1, WFDC3, MROH8, SOGA1, TLDC2, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, CNBD2, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, EPB41L1, DLGAP4, ZHX3, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, NA NA NA NA NA NA NA NA NA LTS-014 PPP1R16B, SNORA71B, SNORA71A, GHRH, TP53TG5, WFDC10B, HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, DBNDD2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, NDRG3, SLC12A5, NCOA5, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, NORAD, LPIN3, SLPI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, FAM83D, SLA2, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40, TTI1, MAFB) 0.0531659786733327 181 0.0216043259542762 0.90574273545541 10066 0.371491903259305 2 2 0 -6.76932007984148 LTS-014 NA NA NA NA LTS-014 chr20 45022831 45023006 176 * ELMO2 NA 0 NA 0.733 1 NA NA NA NA NA LTS-014 chr20 45023007 59225064 14202058 * c(SNORD12B, MIR298, ZNF663P, LOC100131496, MIR4325, MIR3194, MTRNR2L3, MIR3616, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, TRERNA1, SYCP2, CEBPB, ARFGEF2, TP53RK, FAM210B, PHACTR3, OCSTAMP, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, FAM65C, CSE1L, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, SNORD12C, MOCS3, GNAS, LINC00494, NA NA NA NA NA NA NA NA NA LTS-014 LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, FAM209B, SUMO1P1, MIR296, MC3R, ZFAS1, NFATC2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, RNF114, SULF2, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, PREX1, PTPN1, CDH26, ELMO2, FAM217B, SLC13A3, BMP7, SNAI1, STAU1, AURKA, SNORD12, MIR645, TFAP2C, UBE2V1, MKRN7P, ZNF217, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NPEPL1, TUBB1, ZBP1, SLC2A10, NCOA3, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB, B4GALT5, SPATA2) 0.0530369831210837 161 0.0311384867510105 0.879351095910778 8749 0.264348816371498 2 2 0 -6.73684334070118 LTS-014 NA NA NA NA LTS-014 chr20 59225065 62714783 3489719 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, LINC00176, MIR646HG, KCNQ2, NA NA NA NA NA NA NA NA NA LTS-014 LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.0543862659484697 113 0.0246966328183899 0.938901540209179 5281 0.263673360701117 2 2 0 -6.84801655244213 LTS-014 NA NA NA NA LTS-014 chr20 62714784 62959313 244530 * c(LINC00266-1, LKAAEAR1, NPBWR2, MYT1, OPRL1, PCMTD2) NA 0 NA 0.902056179018524 360 0.196709705545908 2 NA NA -5.76628357678095 LTS-014 chr21 9825764 9825966 203 * MIR3648-1 0.25 1 NA 0.407715790897032 3 0.128274445363577 1 1 0 -5.76465703530289 LTS-014 chr21 9825967 11098723 1272757 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.266744533294775 51 0.155302780804112 0.432207731739067 195 0.345507732216533 1 1 0 -7.45909717066016 LTS-014 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 0.356916085328975 4 0.0801888396224811 1 NA NA -5.76482048290084 LTS-014 chr21 14745307 14917181 171875 * MIR3156-3 0.109 1 NA 0.35309588667871 53 0.1195070608404 1 1 0 -6.45115666837092 LTS-014 chr21 14917182 15966430 1049249 * c(SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.0944080241291958 3 0.030347981810987 0.413252893096469 338 0.127997939759419 1 1 0 -7.6886245431552 LTS-014 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 0.669 1 NA NA NA NA NA LTS-014 chr21 15974248 19161689 3187442 * c(LINC01549, BTG3, CXADR, C21orf91-OT1, USP25, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, C21orf91, NRIP1) 0.361244957113681 6 0.179662646831963 0.85599973033165 606 0.317347651237412 2 1 1 -6.84372180238941 LTS-014 chr21 19161690 19162243 554 * c(C21orf91-OT1, C21orf91) 0.479 1 NA 1.17529579789878 15 0.644151542359257 3 3 0 -5.76441541739473 LTS-014 chr21 19162244 33041286 13879043 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, ADAMTS5, MIR155HG, CYYR1, LINC00161, KRTAP13-1, CHODL, LINC00189, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, NA NA NA NA NA NA NA NA NA LTS-014 KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, APP, LINC00317, LINC00320, KRTAP26-1, MIR155, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SOD1, TIAM1, KRTAP19-8, CLDN8, ADAMTS1) 0.434801808400536 62 0.0673859515979832 0.863249209237875 3132 0.21918846448959 2 1 1 -6.81444502136959 LTS-014 NA NA NA NA LTS-014 chr21 33041287 33043322 2036 * SCAF4 NA 0 NA 1.197 1 NA NA NA NA NA LTS-014 chr21 33043323 33964599 921277 * c(LINC00159, TCP10L, HUNK, MIS18A, MRAP, C21orf59, SCAF4, EVA1C, SNORA80A, URB1-AS1, URB1) 0.462030592664274 20 0.0344513004872553 0.95517140471367 780 0.55555343392461 2 1 1 -7.15029733982209 LTS-014 chr21 33964600 40887508 6922909 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, BRWD1-AS1, OLIG2, DSCR4, DSCR3, LINC00310, OLIG1, LCA5L, RCAN1, DYRK1A, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, DSCR10, GART, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, SETD4, CLIC6, DNAJC28, C21orf62, C21orf59, SH3BGR, NA NA NA NA NA NA NA NA NA LTS-014 ITSN1, SIM2, MRPS6, SLC5A3, SON, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.43974757255755 127 0.0646117948945474 0.852648575815959 5998 0.828320904416406 2 1 1 -6.74717964019901 LTS-014 NA NA NA NA LTS-014 chr21 40887509 40969088 81580 * c(B3GALT5, B3GALT5-AS1) NA 0 NA 1.264 1 NA NA NA NA NA LTS-014 chr21 40969089 48084820 7115732 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, DSCAM-IT1, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, NA NA NA NA NA NA NA NA NA LTS-014 KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.444156846186486 306 0.0829085841310697 0.912704786818936 8400 0.279059727461082 2 1 1 -6.80705305881929 LTS-014 NA NA NA NA LTS-014 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.00556567399259 5 0.0799468573491166 2 NA NA -5.76468662094247 LTS-014 chr22 16157787 16157822 36 * character(0) 0 1 NA 2.415 1 NA NA NA NA NA LTS-014 chr22 16157823 17443238 1285416 * c(GAB4, CCT8L2, XKR3, ANKRD62P1-PARP4P3, POTEH, HSFY1P1, TPTEP1, OR11H1) 0.190411036918383 9 0.160936668012952 0.492061649679645 237 0.189087002973648 1 1 0 -6.92053716564905 LTS-014 chr22 17443239 17443263 25 * GAB4 0.11 1 NA 0.435231210877225 3 0.187356167054446 1 1 0 -5.764415825447 LTS-014 chr22 17443264 20307253 2863990 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, IL17RA, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, NA NA NA NA NA NA NA NA NA LTS-014 MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.0946706738985473 127 0.0505698745398249 0.530015920553543 4249 0.176123891721032 1 1 0 -7.06691417051026 LTS-014 NA NA NA NA LTS-014 chr22 20307254 20307256 3 * DGCR6L 0.049 1 NA 0.025 1 NA NA NA NA NA LTS-014 chr22 20307257 20398710 91454 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.256869375023034 39 0.183843747831505 1 NA NA -6.37372594278179 LTS-014 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.599 1 NA NA NA NA NA LTS-014 chr22 20717835 24340955 3623121 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, NA NA NA NA NA NA NA NA NA LTS-014 SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.121485170447037 154 0.0633978391695982 0.514033476452691 4402 0.179752899964421 1 1 0 -6.96161616060616 LTS-014 NA NA NA NA LTS-014 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 0.822 1 NA NA NA NA NA LTS-014 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.03363329997293 57 0.19666614364231 2 NA NA -5.78070159278826 LTS-014 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.445 1 NA NA NA NA NA LTS-014 chr22 24400149 51117580 26717432 * c(LOC100128531, LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3201, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3619, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4764, MIR4535, ZNRF3-AS1, EFCAB6-AS1, APOBEC3A_B, DNAL4, SF3A1, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, NA NA NA NA NA NA NA NA NA LTS-014 RFPL2, RFPL1S, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, CHEK2, PACSIN2, PHF21B, KLHDC7B, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, SGSM1, EMID1, ANKRD54, ADORA2A, CPT1B, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, FBLN1, MORC2, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, SLC16A8, SEC14L2, MAPK8IP2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PLXNB2, PITPNB, PISD, OSBP2, MAFF, BRD1, ARHGAP8, APOL2, AP1B1P1, TFIP11, PRR14L, SERHL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 BPIFC, XRCC6, TMEM211, C22orf31, TBC1D22A, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, SEC14L3, RNU12, ATP5L2, GGT1, SNORD43, GGT5, INPP5J, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, LOC284933, POM121L9P, CARD10, PARVB, NCAPH2, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 C22orf34, IL2RB, KCNJ4, SDC4P, CHKB-CPT1B, LRRC75B, OGFRP1, LINC00207, LGALS1, LGALS2, LIF, LIMK2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, SRRD, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, MB, PIM3, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, ODF3B, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, GTSE1, MTFP1, PDGFB, UPB1, PMM1, A4GALT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 POLR2F, MOV10L1, MIEF1, PPARA, TUG1, FAM118A, TTC38, CCDC157, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, ZMAT5, SEPT3, MAPK11, SUSD2, EIF4ENIF1, PANX2, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, BCRP3, SYCE3, ADORA2A-AS1, POM121L10P, FAM227A, CERK, EFCAB6, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCF20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 TCN2, TEF, TSPO, TIMP3, TOP1P2, MIR658, MIR659, TST, SEC14L6, LOC730668, UPK3A, WNT7B, XBP1, YWHAH, MPPED1, CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, FOXRED2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, SELENOO, L3MBTL2, TBC1D10A, HDAC10, PLA2G6, KREMEN1, ZNRF3, ASCC2, LDOC1L, POLDIP3, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1644, SHANK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 KIAA1656, MICALL1, TUBGCP6, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, NA, LMF2, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, CELSR1, DEPDC5, PPP6R2, SFI1, ZBED4, JOSD1, RBX1, SCO2) 0.0956425508660955 686 0.0440864485703163 0.512695524444595 29547 0.161638684829256 1 1 0 -7.81659602713074 LTS-014 NA NA NA NA LTS-014 chr22 51117581 51220846 103266 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.475154534875635 239 0.137248833990314 1 NA NA -5.76737245055271 LTS-014 chrX 2699993 2700027 35 * XG 0.073 1 NA 1.686 1 NA NA NA NA NA LTS-014 chrX 2700028 11785429 9085402 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.0944298964602538 44 0.0629005179514634 0.518655187550117 2696 0.167489486323824 1 1 0 -7.32005957772086 LTS-014 chrX 11785430 16863283 5077854 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.0827692386799704 23 0.0447699874766135 0.470638367119863 2874 0.124951882677396 1 1 0 -7.10325015027466 LTS-014 chrX 16863284 16863903 620 * RBBP7 NA 0 NA 0.602 1 NA NA NA NA NA LTS-014 chrX 16863904 19431637 2567734 * c(PHKA2-AS1, MIR4768, ADGRG2, SCML2, RAI2, BEND2, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, RBBP7, RS1, SCML1, CDKL5, REPS2) 0.0828549786288001 8 0.0566158735944006 0.53074375896928 1653 0.163540487680839 1 1 0 -7.13516161203414 LTS-014 chrX 19431638 19433223 1586 * MAP3K15 NA 0 NA 0.451 1 NA NA NA NA NA LTS-014 chrX 19433224 46480556 27047333 * c(SUPT20HL1, LOC100132831, SCARNA9L, MIR23C, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ATP6AP2, PRDX4, IL1RAPL1, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, ZNF645, FAM47A, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, GK, GPR82, GPR34, LINC01281, CFAP47, MAGEB18, SH3KBP1, LANCL3, MPC1L, NA NA NA NA NA NA NA NA NA LTS-014 DCAF8L2, MAGEB5, MAP3K15, LOC392452, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, OTC, MBTPS2, PDK3, PHEX, FTHL17, POLA1, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NYX, RPGR, RPS6KA3, SAT1, DUSP21, ZNF674, NA, SMS, SCARNA23, DYNLT3, TSPAN7, LOC729609, KDM6A, XK, ZFX, APOO, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, USP9X, TMEM47, SRPX, SLC9A7, CASK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MED14, SYTL5, PCYT1B) 0.082574653374226 71 0.055509583706778 0.492358525326169 8693 0.153947798980326 1 1 0 -6.80707768112941 LTS-014 NA NA NA NA LTS-014 chrX 46480557 50134452 3653896 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, ELK1, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, TBC1D25, FOXP3, CDK16, CFP, PLP2, NDUFB11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, NA NA NA NA NA NA NA NA NA LTS-014 RBM3, RP2, NA, GAGE2B, GAGE13, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, LINC01545, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, USP11, RBM10, UXT, SLC9A7, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, RGN, SLC38A5, PAGE4, JADE3) 0.0876438522696859 46 0.038247503154906 0.536313666134309 5082 0.136688634617235 1 1 0 -7.62958003504686 LTS-014 NA NA NA NA LTS-014 chrX 50134453 50135327 875 * DGKK 0.22 1 NA 0.682483306750796 9 0.343859871330039 2 2 0 -5.76470238432025 LTS-014 chrX 50135328 53350051 3214724 * c(DGKK, XAGE3, XAGE5, NUDT10, IQSEC2, GSPT2, SSX7, SSX8, SPANXN5, GPR173, NUDT11, SHROOM4, TSPYL2, XAGE1B, FAM156B, MAGED4B, KDM5C, BMP15, MAGED1) 0.24299694975597 13 0.113759643152818 0.534652712233334 1095 0.144918995368973 1 1 0 -8.20314007394718 LTS-014 chrX 53350052 55185656 1835605 * c(HUWE1, MAGED2, RIBC1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, PFKFB1, GNL3L, FAM120C, WNK3, SNORA11, TRO, SMC1A, TSR2, FAM104B) 0.207738022209969 16 0.115982110689537 0.509746764225061 2441 0.131185806155355 1 1 0 -7.31957721607081 LTS-014 chrX 55185657 57937169 2751513 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) NA 0 NA 0.482000909766541 815 0.114707089469175 1 NA NA -5.79522557112341 LTS-014 chrX 61999880 62898158 898279 * c(SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.510741152512677 185 0.197690237403741 1 1 0 -5.78887523987396 LTS-014 chrX 62898159 149931158 87033000 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR374B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00893, ARMCX4, UBE2DNL, CXorf51B, LINC00894, LINC00630, MIR1468, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, FTX, SLC25A5-AS1, MIR764, MIR2114, TRPC5OS, MIR514B, MIR4328, MIR4329, MAMLD1, MIR374C, MIR676, LINC00629, ARMCX5-GPRASP2, RPL36A-HNRNPH2, NA NA NA NA NA NA NA NA NA LTS-014 MIR3978, HS6ST2-AS1, MAGEA8-AS1, TENM1, CDR1, CDX4, SLC9A6, ENOX2, STAG2, PLAC1, CYSLTR1, UTP14A, PGRMC1, TMSB15A, MID2, CHM, SLC6A14, VSIG4, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, COX7B, SLITRK4, SPANXN3, MAGEC3, DCAF12L1, MAP2K4P1, PIH1D3, MUM1L1, FAM199X, AMER1, APOOL, HDX, ADGRG4, OTUD6A, UPRT, MAGEE2, ACTRT1, GPR119, RBMXL3, DOCK11, TCEAL2, PABPC5, RAB40A, ASB12, CSTF2, CYLC1, AMOT, FMR1NB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, H2BFWT, FAM122B, FAM122C, DCX, TIMM8A, FAM46D, ZCCHC12, NA, NA, DIAPH2, DLG3, DRP2, TSC22D3, AGTR2, EDA, EFNB1, ELF4, CT83, SLC25A43, ZCCHC5, NRK, INTS6L, ZNF449, TMEM31, F9, ACSL4, ABCB7, GPC4, FGF13, FHL1, SEPT6, ARHGEF9, FMR1, AFF2, ATP1B4, KCNE5, LDOC1, KIF4A, CENPI, BRWD3, CT47A11, FAM127B, IL1RAPL2, ITGB1BP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SNORA69, SNORD61, BEX3, NOX1, GJB1, FAM155B, INGX, GLA, GPC3, SRPX2, RBMX, PCDH11X, RPS6KA6, P2RY10, HTATSF1, GLUD2, RAB40AL, CXCR3, LPAR4, ATP11C, LINC00632, H2BFM, LOC286437, YIPF6, FIRRE, TTC3P1, FAM133A, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, SNX12, RPA4, HNRNPH2, HPRT1, XIAP, HTR2C, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, ZC3H12B, SATL1, DCAF12L2, ZCCHC16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 LHFPL1, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, DGAT2L6, RAB41, IGBP1, IGSF1, IL2RG, IL13RA1, IL13RA2, AR, ZCCHC13, LOC389895, UBE2NL, LAMP2, FLJ44635, ARL13A, SMIM10L2A, SLC25A53, LINC00890, XKRX, SH2D1A, MIR106A, MIR19B2, ARR3, MIR223, MIR92A2, MAGEA8, MAGEA11, MCF2, FOXO4, LINC00891, RPS26P11, GLRA4, FAM127C, CT45A3, CT45A5, SPANXN4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, MTM1, NAP1L2, NAP1L3, NDUFA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 NONO, SPANXN1, SPANXN2, MIR384, MIR424, OCRL, OPHN1, P2RY4, PAK3, TBX22, ZDHHC9, RLIM, TCEAL9, RAB9B, LUZP4, PDZD11, PBDC1, TFDP3, ARMCX1, MAGEC2, VGLL1, ARMCX3, TAF9B, RBMX2, STK26, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, PLP1, PLS3, ATP7A, CT45A6, CT45A1, CXorf40B, NLGN3, SASH3, TAF7L, ARMCX6, WDR44, POU3F4, ATRX, ERCC6L, NUP62CL, GDPD2, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, JPX, MIR448, MIR450A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 SAGE1, ZNF280C, MTMR8, MBNL3, BEX1, HDAC8, ZC4H2, NXT2, NKRF, NXF5, NXF4, NXF3, KLHL4, TEX13B, TEX13A, TEX11, MOSPD1, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, PCDH19, RGAG1, LRCH2, MAGEE1, RAP2C, TMEM35A, EDA2R, RPL39, RPL36A, BCYRN1, RPS4X, SPANXA2-OT1, BCORL1, CXorf56, TNMD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 PJA1, CT47B1, BRDTP1, ZCCHC18, SMIM10, SMIM10L2B, SH3BGRL, PABPC1L2B, NAP1L6, SPANXC, ARMCX5, UPF3B, CT47A7, FAM226B, SLC16A2, SMARCA1, MIR545, MIR542, SOX3, SRD5A1P1, SNORA35, BRS3, TAF1, SERPINA7, SNORD96B, MIR421, BTK, TDGF1P3, TSPAN6, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XIST, XPNPEP2, ZIC3, ZNF711, ZNF75D, MIR766, RNF113A, HMGN5, NKAP, RNF128, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, LAS1L, CAPN6, GPR101, USP26, FRMD8P1, MAGT1, TMEM164, PHF6, ZMAT1, CUL4B, TMEM185A, SLITRK2, GPR174, BEX2, IRS4, OGT, MIR503HG, SLC7A3, TCEAL3, MTMR1, FGF16, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, TGIF2LX, CLDN2, TCEAL8, AIFM1, TMEM257, CHRDL1, CXorf40A, ZMYM3, RIPPLY1, TCEAL1, MMGT1, RAB33A, TSIX, ACRC, SYTL4, ITM2A, ARHGEF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-014 CD40LG, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, MAGEC1, AMMECR1, MED12) 0.0861021880565868 238 0.0535615002441764 0.501680801369208 31526 0.161374721272546 1 1 0 -7.76687768378596 LTS-014 NA NA NA NA LTS-014 chrX 149931159 149931261 103 * MTMR1 NA 0 NA 0.949 1 NA NA NA NA NA LTS-014 chrX 149931262 153714046 3782785 * c(CSAG4, NA, NA, MIR718, MIR3202-2, MIR4330, MIR3202-1, MAGEA10-MAGEA5, BCAP31, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA10, MAGEA12, MECP2, ATP2B3, NSDHL, PLXNB3, ATP6AP1, NA NA NA NA NA NA NA NA NA LTS-014 AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, RPL10, BGN, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, UBL4A, TMEM187, LAGE3, TKTL1, CD99L2, MTMR1, FATE1, FAM50A, FAM58A, GPR50) 0.101746528262228 73 0.0877576159820986 0.538300606009278 5194 0.161782185872147 1 1 0 -7.42582096544749 LTS-014 NA NA NA NA LTS-014 chrX 153714047 154327584 613538 * c(SMIM9, CMC4, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, BRCC3, UBL4A, SLC10A3, IKBKG) 0 2 0 0.482573057245323 1044 0.140527896706322 0 0 0 -Inf LTS-014 chrX 154327585 154774986 447402 * c(RAB39B, CLIC2, TMLHE, VBP1, BRCC3) NA 0 NA 0.470189757513284 283 0.136262636762542 1 NA NA -5.78805596060189 LTS-014 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0455352390163931 25 0.0409395082204627 0 NA NA -17.3628301899391 LTS-014 chrY 13309514 13310590 1077 * character(0) 0.2 1 NA 0.293257296488414 7 0.078512965262342 1 1 0 -5.79180482292684 LTS-014 chrY 13310591 13310646 56 * character(0) 0.148999604633531 3 0.126531945900367 0.310266699410832 5 0.185049452849772 7 6 1 -6.73914775023503 LTS-014 chr1 65893 762273 696381 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.463 1 NA 1.80355785390429 23 0.569778571511214 7 7 0 -5.76648557062573 LTS-015 chr1 762274 1608081 845808 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-015 CDK11B) 0.400724782002629 53 0.083540487563871 1.39837918008415 3002 0.357613431863455 5 3 2 -6.73831995411132 LTS-015 NA NA NA NA LTS-015 chr1 1608082 1608180 99 * c(SLC35E2B, CDK11B) NA 0 NA 1.124 1 NA NA NA NA NA LTS-015 chr1 1608181 1633274 25094 * c(SLC35E2B, MMP23A, CDK11B) 0.427 1 NA 0.438639352908785 38 0.471643183263189 1 1 0 -5.7646174918738 LTS-015 chr1 1633275 1634935 1661 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 1.601 1 NA NA NA NA NA LTS-015 chr1 1634936 1638995 4060 * c(CDK11A, SLC35E2B, CDK11B) 0.403 1 NA 1.00275729017765 39 0.609149174340071 3 3 0 -5.76448295872068 LTS-015 chr1 1638996 1639029 34 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.411 1 NA NA NA NA NA LTS-015 chr1 1639030 1646693 7664 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.424092515052878 46 0.376011360194302 1 NA NA -5.76442534288705 LTS-015 chr1 1646694 1656928 10235 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.417984652593754 11 0.0759766710606259 0.890146286241673 65 0.534158218511937 5 3 2 -6.74670561163124 LTS-015 chr1 1656929 7732263 6075335 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-015 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.41569971821711 120 0.0870031004953175 1.43218081642231 5375 0.379994364725245 5 3 2 -6.75966598366899 LTS-015 NA NA NA NA LTS-015 chr1 7732264 7737620 5357 * CAMTA1 NA 0 NA 1.206 1 NA NA NA NA NA LTS-015 chr1 7737621 12856273 5118653 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, TNFRSF9, DRAXIN, CENPS, PRAMEF12, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, NA NA NA NA NA NA NA NA NA LTS-015 PIK3CD-AS1, NMNAT1, PRAMEF1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.413719457840884 133 0.0461691800610996 1.3710731904267 6851 0.283832782944121 5 3 2 -6.7479379137762 LTS-015 NA NA NA NA LTS-015 chr1 12856274 12907350 51077 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1) 0.059 1 NA 1.51744733408658 18 0.913631023476558 6 6 0 -5.76461027772532 LTS-015 chr1 12907351 12908236 886 * c(HNRNPCL1, HNRNPCL3) 0.294740849374394 8 0.138573278706353 1.71357422302016 24 1.05008699432579 14 10 4 -6.73333691804971 LTS-015 chr1 12908237 12908243 7 * c(HNRNPCL1, HNRNPCL3) 0.437 1 NA 2.32 1 NA NA NA NA NA LTS-015 chr1 12908244 15754484 2846241 * c(PDPN, FHAD1, LRRC38, TMEM51-AS1, KAZN, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, TMEM51, PRAMEF19, PRAMEF20, PRAMEF2, PRAMEF22, NA, PRDM2, EFHD2) 0.378451442662878 50 0.0554323599588926 1.43006885851364 972 0.432516218290346 5 3 2 -6.91133382803272 LTS-015 chr1 15754485 15772212 17728 * c(CTRC, EFHD2) 0.466 1 NA 1.44542531275969 67 0.31787558119468 5 5 0 -5.76457113305372 LTS-015 chr1 15772213 16862502 1090290 * c(CTRC, CROCCP3, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, SPEN, PLEKHM2, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, RSG1, AGMAT, CASP9, DDI2) 0.429645014455506 92 0.0797118856315746 1.40732048725324 2347 3.86285962037687 7 4 3 -6.73807686699613 LTS-015 chr1 16862503 16863304 802 * character(0) 0.223 1 NA 1.11271150866198 5 0.260503934711167 4 4 0 -5.7644163780615 LTS-015 chr1 16863305 16975366 112062 * c(MST1P2, NBPF1, CROCCP2) 0.363285191501959 6 0.117143786291321 1.28750261782617 59 0.314993762984091 6 4 2 -6.77834060258511 LTS-015 chr1 16975367 16975753 387 * MST1P2 NA 0 NA 1.032 1 NA NA NA NA NA LTS-015 chr1 16975754 16978916 3163 * MST1P2 0.418363793222054 5 0.111405565390603 0.953838940821879 76 0.396434787009008 5 3 2 -6.73947403850056 LTS-015 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.55 1 NA NA NA NA NA LTS-015 chr1 17009684 17029313 19630 * ESPNP 0.306819007169532 13 0.0689736107098865 1.9890172528615 96 0.471407159912391 7 5 2 -6.73352291138137 LTS-015 chr1 17029314 17029394 81 * ESPNP NA 0 NA 1.361 1 NA NA NA NA NA LTS-015 chr1 17029395 17301780 272386 * c(MST1L, ESPNP, MFAP2, CROCC) 0.326286145844314 38 0.0687340774268158 1.51843962528102 392 0.496708020089418 6 4 2 -6.81023488927624 LTS-015 chr1 17301781 17312743 10963 * c(ATP13A2, MFAP2) 0.439 1 NA 1.50830853277206 35 0.254821110427154 6 6 0 -5.76505631904771 LTS-015 chr1 17312744 17431518 118775 * c(PADI2, ATP13A2, SDHB) 0.419562525005973 21 0.0498211563399287 1.4974931833378 335 1.08692007745191 7 4 3 -6.74545596906924 LTS-015 chr1 17431519 19437035 2005517 * c(MIR4695, PADI2, IFFO2, KLHDC7A, UBR4, PADI4, PADI1, PADI6, PAX7, PADI3, ARHGEF10L, RCC2, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.45040507431097 27 0.0371457436028176 1.20787335437895 1530 0.257273953785804 4 2 2 -6.81566878576864 LTS-015 chr1 19437036 19437238 203 * UBR4 NA 0 NA 0.968 1 NA NA NA NA NA LTS-015 chr1 19437239 25573167 6135929 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, NA NA NA NA NA NA NA NA NA LTS-015 PLA2G2C, SH2D5, NCMAP, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, RUNX3, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.427799127202989 171 0.0984531228872947 1.14385252910563 8119 0.273227906689439 4 2 2 -6.74508744979629 LTS-015 NA NA NA NA LTS-015 chr1 25573168 25599152 25985 * c(RSRP1, RHD) NA 0 NA 0.886583741127639 40 0.432355088365914 3 NA NA -5.76443654997273 LTS-015 chr1 25599153 25656954 57802 * c(RSRP1, RHD) NA 0 NA 0.0802984215231169 77 0.0436429072047486 0 NA NA -10.2652518980276 LTS-015 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.265 1 NA NA NA NA NA LTS-015 chr1 25666924 43698279 18031356 * c(FAM229A, MATN1-AS1, LOC100129924, NFYC-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, CNKSR1, ZMPSTE24, CD52, PPIE, PPIH, CAP1, KHDRBS1, GMEB1, NUDC, SF3A3, EBNA1BP2, RCC1, SMIM12, AZIN2, TMEM54, ERMAP, CSMD2, RAB42, FAM46B, KDF1, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, COL16A1, NA NA NA NA NA NA NA NA NA LTS-015 CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, CLDN19, CFAP57, CTPS1, CITED4, PAQR7, EDN2, PHC2, AGO3, AGO4, FAM76A, TXLNA, SLFNL1, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, FOXJ3, SCMH1, WDTC1, NCDN, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, RIMKLA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GRIK3, GUCA2A, GUCA2B, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, SVBP, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MIR30C1, MIR30E, MATN1, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, OPRD1, PAFAH2, ZNF593, ZNF691, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, TRIT1, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TMEM57, TRIM62, PEF1, PPT1, PIGV, MAP7D1, IQCC, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, HIVEP3, RBBP4, RHCE, RLF, RPA2, RPS6KA1, GPATCH3, CLSPN, OXCT2, RRAGC, TINAGL1, P3H1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, SMAP2, S100PBP, MEAF6, EXO5, CEP85, MRPS15, MARCKSL1, SLC2A1, ZFP69B, ZBTB8A, LOC653160, SLC9A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, LINC01137, PPIEL, CCDC30, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, C1orf50, CCDC28B, NKAIN1, AKIRIN1, YRDC, PPCS, LIN28A, SH3D21, SNIP1, ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, ZMYND12, ZDHHC18, NR0B2, NT5C1A, TRIM63, FAM167B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, KCNQ4, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, RIMS3, THRAP3) 0.452686036188718 379 0.0464029868414712 1.12634127073484 20945 0.251596860887285 4 2 2 -6.81880016478261 LTS-015 NA NA NA NA LTS-015 chr1 43698280 43699903 1624 * c(EBNA1BP2, CFAP57) NA 0 NA 1.509 1 NA NA NA NA NA LTS-015 chr1 43699904 45092067 1392164 * c(KDM4A-AS1, MIR5584, EBNA1BP2, MED8, KLF17, TMEM125, CFAP57, C1orf210, CCDC24, DPH2, SZT2, MPL, ATP6V0B, RNF220, DMAP1, PTPRF, ELOVL1, ST3GAL3, SLC6A9, TIE1, ERI3, HYI, B4GALT2, ARTN, IPO13, KDM4A, CDC20) 0.449178960452089 34 0.0865602373382666 1.20690699596963 2095 0.25103498824084 4 2 2 -6.77261664401191 LTS-015 chr1 45092068 45097533 5466 * RNF220 NA 0 NA 0.976 1 NA NA NA NA NA LTS-015 chr1 45097534 54722936 9625403 * c(EFCAB14-AS1, MIR761, MKNK1-AS1, LOC100507564, MIR4781, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, OSBPL9, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, CPT2, KNCN, MOB3C, GLIS1, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, SLC25A3P1, DIO1, ELAVL4, CYP4Z1, CDCP2, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, SSBP3, MMACHC, CYP4X1, BEST4, NA NA NA NA NA NA NA NA NA LTS-015 SNORD55, RNF11, CYP4A22, C1orf185, GPX7, C1orf228, TCTEX1D4, FAM159A, IPP, TEX38, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LINC01144, MAGOH, ZYG11A, MUTYH, NASP, NRDC, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HSPB11, CMPK1, LURAP1, YIPF1, SPATA6, C1orf123, RNF220, ECHDC2, POMGNT1, NDC1, ZSWIM5, RAB3B, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, TAL1, RPS15AP10, FAAHP1, UQCRH, UROD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LRP8, TMEM53, HECTD3, BEND5, ZYG11B, RAD54L, FOXD2-AS1, HPDL, AGBL4, PRPF38A, PIK3R3, MKNK1, PTCH2, EIF2B3, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, TMEM59, EFCAB14) 0.450080966465644 154 0.0798620183995731 1.14906178048914 9240 0.267692276575198 4 2 2 -6.74020341411639 LTS-015 NA NA NA NA LTS-015 chr1 54722937 55014099 291163 * c(SSBP3, ACOT11) 0.474 1 NA 0.963022044553093 35 0.183921178769602 3 3 0 -5.78608692272559 LTS-015 chr1 55014100 55014160 61 * ACOT11 0.411 1 NA 0.787646232159148 4 0.125385738157628 3 3 0 -5.76445256416497 LTS-015 chr1 55014161 71546984 16532824 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, LOC100507634, MROH7-TTC4, MIR4422, MIR4794, MIR4711, PATJ, HHLA3, MYSM1, OMA1, C1orf87, UBE2U, CTH, IL23R, CYP2J2, DAB1, LEXM, KANK4, GADD45A, DHCR24, LINC00466, C1orf168, TMEM61, TCTEX1D1, AK4, SLC35D1, USP24, ITGB3BP, PCSK9, PARS2, ACOT11, SERBP1, FOXD3, ANGPTL3, ALG6, FAM151A, IL12RB2, JAK1, JUN, MROH7, LEPR, C1orf141, MIR101-1, NA NA NA NA NA NA NA NA NA LTS-015 MIR186, TACSTD2, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, PIN1P1, L1TD1, LEPROT, TTC22, RAVER2, FGGY, PRKAA2, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, TTC4, HSD52, C8A, C8B, USP1, BSND, DLEU2L, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, PLPP3, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.400107462737915 169 0.0477024566774378 0.918665128878911 8582 0.214366069247479 3 2 1 -7.11844517238975 LTS-015 NA NA NA NA LTS-015 chr1 71546985 71868600 321616 * ZRANB2-AS2 NA 0 NA 0.619 1 NA NA NA NA NA LTS-015 chr1 71868601 72241986 373386 * NEGR1 NA 0 NA 0.749640835800236 119 0.186531195161203 2 NA NA -5.87006258039263 LTS-015 chr1 72241987 72400748 158762 * c(NEGR1-IT1, NEGR1) NA 0 NA 1.038 1 NA NA NA NA NA LTS-015 chr1 72400749 78030458 5629710 * c(PIGK, FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT) 0.383436834226888 42 0.0703520102244766 0.974397455779273 1927 0.227623730146853 3 2 1 -7.13695992854555 LTS-015 chr1 78030459 89323050 11292592 * c(LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, GNG5, GTF2B, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.37951069734788 80 0.0655751272215814 0.912728979403128 4417 0.659608961428703 3 2 1 -6.7665781289811 LTS-015 chr1 89323051 94497665 5174615 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, ABCA4, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, GCLM, ZNF326, BTBD8, GTF2B, DNTTIP2, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.372835952394115 53 0.0957421587280651 0.86095129624838 3810 0.220245512533975 3 2 1 -6.87658276194091 LTS-015 chr1 94497666 94502267 4602 * ABCA4 NA 0 NA 1.341 1 NA NA NA NA NA LTS-015 chr1 94502268 97915700 3413433 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.366645315599876 14 0.0569520716176195 0.959538662539749 1064 0.235322430456904 3 2 1 -6.86970513314105 LTS-015 chr1 97915701 120927081 23011381 * c(MIR942, LINC01349, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, MIR2682, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, OLFM3, MAB21L3, ATXN7L2, C1orf194, LRRC39, HSD3BP4, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, NA NA NA NA NA NA NA NA NA LTS-015 UBL4B, AGL, DPYD, S1PR1, CELSR2, SPAG17, HIPK1, EXTL2, FCGR1B, NTNG1, WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, HIST2H2BA, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR137HG, MIR137, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, GDAP2, FAM46C, PALMD, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 FAM72B, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, MIR553, TSHB, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, RTCA, ZNF697, SLC16A4, CD2, CD101, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.364862864365933 314 0.0691597319782183 0.89636736026701 15252 0.304251518731984 3 2 1 -6.73998685305441 LTS-015 NA NA NA NA LTS-015 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.823431516213524 80 0.211209611149143 3 NA NA -5.80779640790626 LTS-015 chr1 143912360 144013865 101506 * FAM72D 0.314 1 NA 0.710437615623806 5 0.18000638877551 2 2 0 -5.77511070085505 LTS-015 chr1 144013866 145075854 1061989 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.430643566990349 56 0.0751189878636709 0.857843546409053 531 0.237070587448508 3 2 1 -7.19542105422332 LTS-015 chr1 145075855 145075923 69 * c(NBPF20, PDE4DIP) 0.259 1 NA 0.97403341022415 3 0.305574868076548 3 3 0 -5.76441267661544 LTS-015 chr1 145075924 145283557 207634 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.260088896972759 21 0.0784482541005762 0.875159758644452 186 0.323148991498024 4 3 1 -6.89026584173749 LTS-015 chr1 145283558 145283699 142 * c(NBPF10, NBPF20, NOTCH2NL) 0.375 1 NA 1.05341724214648 3 0.226841354254466 4 4 0 -5.76442186052815 LTS-015 chr1 145283700 151497217 6213518 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, CD160, VPS45, GABPB2, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, NOTCH2NL, LINC01138, LOC388692, LYSMD1, ARNT, NA NA NA NA NA NA NA NA NA LTS-015 MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, VPS72, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.3667480267511 59 0.0765335939272131 0.903105106930126 6396 1.10127306157502 3 2 1 -6.73358208250497 LTS-015 NA NA NA NA LTS-015 chr1 151497218 152760214 1262997 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.378954560923073 39 0.0798177918263703 0.954839525741589 1923 0.229730426769408 3 2 1 -6.79812005758473 LTS-015 chr1 152760215 152777462 17248 * c(LCE1C, LCE1D, LCE1E) 0.37685996584907 9 0.109304366081344 1.34213445090201 51 0.466451284470644 8 5 3 -6.74542019733969 LTS-015 chr1 152777463 156838525 4061063 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, NA NA NA NA NA NA NA NA NA LTS-015 S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, ILF2, INSRR, IVL, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.388154851078454 165 0.0580526559663295 0.911186791349313 9760 0.196001666435548 3 2 1 -6.83742409158737 LTS-015 NA NA NA NA LTS-015 chr1 156838526 158549641 1711116 * c(FCRL1, FCRL3, OR10T2, OR6P1, OR10X1, LRRC71, ETV3, OR10R2, CYCSP52, PEAR1, OR10K2, OR10K1, OR6Y1, ETV3L, NTRK1, KIRREL, LOC646268, MIR765, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, ARHGEF11) 0.369976595544349 51 0.0966146256130662 0.979028357330142 2040 0.269354484302113 3 2 1 -6.82730877385479 LTS-015 chr1 158549642 158565195 15554 * OR10X1 NA 0 NA 0.68 1 NA NA NA NA NA LTS-015 chr1 158565196 161332632 2767437 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, NA NA NA NA NA NA NA NA NA LTS-015 CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.379866638324807 129 0.0494404384337293 0.928959032856251 5178 0.315956053184935 3 2 1 -6.80482096000409 LTS-015 NA NA NA NA LTS-015 chr1 161332633 161332900 268 * SDHC NA 0 NA 0.701 1 NA NA NA NA NA LTS-015 chr1 161332901 161561517 228617 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, SDHC, FCGR2C) 0.387615677480177 6 0.0876257192076999 0.802160024300051 232 0.19459675926445 3 2 1 -6.82465448456226 LTS-015 chr1 161561518 161561949 432 * FCGR2C NA 0 NA 0.276 1 NA NA NA NA NA LTS-015 chr1 161561950 161570511 8562 * FCGR2C NA 0 NA 0.206939489742567 40 0.075897024535441 0 NA NA -5.79614138750063 LTS-015 chr1 161570512 161601059 30548 * c(FCGR3B, HSPA7, FCGR2C) NA 0 NA 0.318296322051513 109 0.110865649102265 1 NA NA -5.86760342712801 LTS-015 chr1 161601060 161641191 40132 * c(FCGR2B, FCGR3B) NA 0 NA 1.226 1 NA NA NA NA NA LTS-015 chr1 161641192 172387577 10746386 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-015 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.382665192428076 117 0.0564020764103692 0.930000320965051 6966 0.25127237145419 3 2 1 -6.88571456083769 LTS-015 NA NA NA NA LTS-015 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 0.773 1 NA NA NA NA NA LTS-015 chr1 172389836 176563711 4173876 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.365654533130901 17 0.111075292429214 0.876772232937478 2307 0.448991389294313 3 2 1 -6.74347839804939 LTS-015 chr1 176563712 176563810 99 * PAPPA2 NA 0 NA 0.996 1 NA NA NA NA NA LTS-015 chr1 176563811 178819728 2255918 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.386188446439982 37 0.0468599440285021 1.00626974106251 1156 0.281353731231562 3 2 1 -7.05568190280234 LTS-015 chr1 178819729 211747298 32927570 * c(MIR181A1HG, GM140, GS1-279B7.1, MIR1231, MIR1278, MIR548F1, ZBED6, MIR4260, MIR3121, PCAT6, LHX4-AS1, MIR4735, MIR5191, RNU6-72P, ARPC5, PRG4, STX6, TIMM17A, LRRN2, IVNS1ABP, KDM5B, CFHR4, CFHR3, OCLM, IL24, CHI3L1, CHIT1, SLC26A9, TSEN15, FAM129A, AXDND1, ATP6V1G3, ZNF648, TEDDM1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, FAM163A, MFSD4A, NA NA NA NA NA NA NA NA NA LTS-015 PM20D1, SHISA4, CTSE, CD55, DENND1B, TDRD5, TOR1AIP2, DHX9, EIF2D, ELF3, FLJ23867, ELK4, F13B, PLEKHA6, KIF21B, NMNAT2, NFASC, COLGALT2, RGL1, CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, ASPM, TOR1AIP1, OPTC, ABL2, DIEXF, GLUL, LINC00303, LEMD1-AS1, LOC284578, LOC284581, LOC284648, SMG7-AS1, GPR25, UBE2T, IL19, CFH, CFHR1, CFHR2, MR1, HSD11B1, BRINP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RD3, KCNT2, RGSL1, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KISS1, LINC00272, C1orf53, TMEM81, LAD1, LAMB3, LAMC1, LAMC2, NA, APOBEC4, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, RGS21, LOC440704, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, NCF2, ATP2B4, G0S2, IL20, GLRX2, ADIPOR1, IER5, CDK18, PDC, UCHL5, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLA2G4A, PLXNA2, SWT1, LAX1, C1orf27, RALGPS2, KLHDC8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ETNK2, AVPR1B, LINC00862, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, LHX9, CAMK1G, SERTAD4-AS1, PTGS2, QSOX1, KIAA1614, PTPN7, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RNPEP, MGAT4EP, TOR3A, MIR205HG, RGS18, NUCKS1, ASCL5, SRGAP2C, SNRPE, SOAT1, TROVE2, SNORA77, CNTN2, TNNI1, TNNT2, TPR, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1E, CACNA1S, NPHS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BTG2, C1orf116, CDC73, EDEM3, TRAF3IP3, NPL, CFHR5, C1orf21, SHCBP1L, TRMT1L, NUAK2, DDX59, RASSF5, HMCN1, FCAMR, ACBD6, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, RGS8, SLC45A3, B3GALT2, RAB29, NAV1, LHX4, ANGPTL1, IGFN1, XPR1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, CEP350, ZC3H11A, SMG7, TMCC2, FAM20B, KIF14) 0.372380597798865 517 0.0591808114971607 0.928800761008267 24307 0.219480627467059 3 2 1 -7.06442131714735 LTS-015 NA NA NA NA LTS-015 chr1 211747299 214546280 2798982 * c(MIR3122, LINC00538, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.3689197708573 47 0.0730593323946623 0.882661383517452 1747 0.206677290500397 3 2 1 -6.75466346571073 LTS-015 chr1 214546281 214549557 3277 * PTPN14 NA 0 NA 1.566 1 NA NA NA NA NA LTS-015 chr1 214549558 219783284 5233727 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, PTPN14, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.382520005362964 42 0.0507679526613158 0.974203741787183 1906 0.235007955885153 3 2 1 -7.12342268276 LTS-015 chr1 219783285 219785375 2091 * character(0) NA 0 NA 0.517997759325026 42 0.331759530652643 1 NA NA -5.7649697958661 LTS-015 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 1.141 1 NA NA NA NA NA LTS-015 chr1 220088472 234454755 14366284 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, NA NA NA NA NA NA NA NA NA LTS-015 PRSS38, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, TRIM17, EGLN1, MAP10, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.376484630128771 208 0.0572219725581101 0.915698173167898 11335 0.208336563101992 3 2 1 -6.80109434964199 LTS-015 NA NA NA NA LTS-015 chr1 234454756 234455842 1087 * SLC35F3 NA 0 NA 0.74 1 NA NA NA NA NA LTS-015 chr1 234455843 236897769 2441927 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.361850993683027 27 0.0887461086181912 0.86076136591056 2163 0.201935453707253 3 2 1 -6.81304609688233 LTS-015 chr1 236897770 236897867 98 * ACTN2 0.438 1 NA 1.17 1 NA NA NA NA NA LTS-015 chr1 236897868 248085309 11187442 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, OR2T8, C1orf229, OR11L1, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, NA NA NA NA NA NA NA NA NA LTS-015 GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.381443180608628 120 0.0544486780685938 0.946099441918472 5558 0.283157814517643 3 2 1 -6.97181521328727 LTS-015 NA NA NA NA LTS-015 chr1 248085310 248097125 11816 * character(0) NA 0 NA 0.73 1 NA NA NA NA NA LTS-015 chr1 248097126 249152001 1054876 * c(MIR3124, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR2T3, OR2T29, OR2M1P, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L, OR2L5) 0.36482632967646 25 0.115522364357152 0.703158060841021 820 0.244172248821631 2 1 1 -7.03207320899038 LTS-015 chr1 249152002 249214134 62133 * c(PGBD2, ZNF692) NA 0 NA 0.641577367076162 95 0.113565620044057 2 NA NA -5.76642887671489 LTS-015 chr2 38824 242793 203970 * c(SH3YL1, FAM110C) 0.498 1 NA 1.05975483509611 127 0.211335939655507 4 4 0 -5.78122832275673 LTS-015 chr2 242794 30864983 30622190 * c(OST4, MIR1301, BRE-AS1, SNORA80B, MIR4261, MIR4263, MIR3125, MIR4262, GTF3C2-AS1, LOC100505716, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PREB, PDIA6, MYCNOS, CENPA, CGREF1, RAB10, ADCY3, YWHAQ, EMILIN1, GPN1, KLHL29, CMPK2, MBOAT2, TMEM18, CIB4, OSR1, TTC32, ZNF513, C2orf50, PQLC3, LINC01105, TCF23, GAREM2, PLB1, FAM84A, GDF7, ADGRF3, FAM179A, DDX1, NA NA NA NA NA NA NA NA NA LTS-015 UBXN2A, DNMT3A, DTNB, E2F6, CYS1, KRTCAP3, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, MYT1L, WDR43, LPIN1, PUM2, FOSL2, NTSR2, ALK, SPDYA, ATP6V1C2, RNASEH1, FTH1P3, LCLAT1, IFT172, GCKR, SH3YL1, SNORD53, FAM150B, DNAJC5G, IAH1, FLJ33534, TRIB2, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, HPCAL1, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNK3, KCNS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, C2orf71, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MPV17, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, ATRAID, NBAS, SF3B6, YPEL5, CPSF3, ACP1, SNTG2, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, PPP1CB, TRMT61B, ASXL2, ADI1, ALLC, DPYSL5, TRIM54, KIDINS220, WDR35, RDH14, AGBL5, LDAH, RPS7, RRM2, SDC1, RBKS, HS1BP3, LOC645949, FNDC4, FAM228A, SOX11, ADAM17, SNORD92, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TPO, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, MYT1L-AS1, UCN, VSNL1, SLC30A3, PXDN, COLEC11, CAD, CENPO, CCDC121, SMC6, CLIP4, NOL10, WDCP, FAM49A, LBH, C2orf16, ZNF512, KLF11, ABHD1, SELENOI, NCOA1, ASAP2, SLC5A6, EIF2B4, TAF1B, RSAD2, ITGB1BP1, DRC1, NT5C1B, OTOF, ROCK2, TP53I3, MRPL33, BRE, GREB1, LAPTM4A, RNF144A, SNX17, SUPT7L) 0.459157453838884 352 0.0393016898209107 1.11595377872344 17156 0.250652021831725 4 2 2 -7.05261811532476 LTS-015 NA NA NA NA LTS-015 chr2 30864984 30866586 1603 * LCLAT1 0.41784797895015 3 0.129456556419519 0.510947081961939 39 0.391702012934032 5 3 2 -6.74244795579661 LTS-015 chr2 30866587 30866685 99 * LCLAT1 NA 0 NA 1.223 1 NA NA NA NA NA LTS-015 chr2 30866686 36780059 5913374 * c(LOC100271832, LOC100288911, MIR4765, MYADML, LCLAT1, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13, FEZ2) 0.464500529766478 56 0.0271780086806255 1.14112137759107 2539 0.307272247562418 4 2 2 -7.13067798116902 LTS-015 chr2 36780060 36780175 116 * FEZ2 NA 0 NA 0.943 1 NA NA NA NA NA LTS-015 chr2 36780176 40339913 3559738 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL, FEZ2) 0.448357435109659 51 0.0716575242686609 1.04002765836989 3069 0.25719396335561 4 2 2 -7.0290660605844 LTS-015 chr2 40339914 61720061 21380148 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LINC01119, MIR3682, MIR4432, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, PUS10, OXER1, KCNG3, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, LOC339803, C2orf74, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, NA NA NA NA NA NA NA NA NA LTS-015 MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, ASB3, DYNC2LI1, PEX13, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, VRK2, XPO1, CAMKMT, FBXO11, CALM2, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, ACYP2) 0.453019230346869 205 0.0574429948437895 1.10639486957797 9067 0.529515736442609 4 2 2 -6.81320855806405 LTS-015 NA NA NA NA LTS-015 chr2 61720062 70781005 9060944 * c(SNORA36C, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, COMMD1, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339807, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, NA NA NA NA NA NA NA NA NA LTS-015 RAB1A, GMCL1, LOC644838, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, FAM136A, SERTAD2, ARHGAP25) 0.452516280597222 87 0.0637482099271192 1.06196040691938 4690 0.336533164310008 4 2 2 -7.01813005547802 LTS-015 NA NA NA NA LTS-015 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.578 1 NA NA NA NA NA LTS-015 chr2 70781031 73518278 2737248 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EGR4, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.478032350139495 32 0.0192638460886977 1.1541661872739 2634 0.244396052310424 4 2 2 -8.35013190882853 LTS-015 chr2 73518279 87092840 13574562 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, NA NA NA NA NA NA NA NA NA LTS-015 TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.452815908854275 119 0.0557026435964395 1.09940437217098 6919 0.243762780920712 4 2 2 -6.98666355054108 LTS-015 NA NA NA NA LTS-015 chr2 87092841 88272945 1180105 * c(ANAPC1P1, CYTOR, LOC285074, RMND5A) 0.380740255525861 3 0.0136503968196289 0.917289318180699 180 0.312344729644284 3 2 1 -7.48858264863114 LTS-015 chr2 88272946 88273020 75 * character(0) NA 0 NA 1.301 1 NA NA NA NA NA LTS-015 chr2 88273021 91809404 3536384 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, LOC654342, EIF2AK3) 0.417918517829623 29 0.0972090454750353 1.15261104945083 876 0.472622724548818 4 2 2 -6.76885229796397 LTS-015 chr2 91809405 91925139 115735 * LOC654342 0.307 1 NA 1.04519148009969 9 0.196653248129798 4 4 0 -5.77966565710993 LTS-015 chr2 91925140 91944161 19022 * character(0) 0.18443968193527 13 0.0820309510067811 1.06979394600795 61 0.354996823660076 7 6 1 -6.7687341664043 LTS-015 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.10498270254479 7 0.338852475275008 4 NA NA -5.76448955584985 LTS-015 chr2 95537183 95537568 386 * c(TEKT4, LOC442028) 0.043 1 NA 1.48491095839084 7 0.786317305393888 5 5 0 -5.76441176507505 LTS-015 chr2 95537569 95824584 287016 * c(TEKT4, MAL, LOC442028, MRPS5, ZNF514) 0.154673496723279 9 0.200933930545452 1.1800019918934 213 0.410751432503585 4 4 0 -6.82739021537741 LTS-015 chr2 95824585 95848018 23434 * c(ZNF2, ZNF514) 0.481 1 NA 1.11532107103798 59 0.171823162870015 4 4 0 -5.76476632035854 LTS-015 chr2 95848019 96601240 753222 * c(TRIM43, PROM2, KCNIP3, FAHD2A, TRIM43B, ZNF2) 0.468545301138502 13 0.0313059755089041 1.12478200248256 515 0.309101493490288 4 2 2 -7.14793430234238 LTS-015 chr2 96601241 96601312 72 * character(0) 0.34 1 NA 1.06085962835603 3 0.241299260946513 4 4 0 -5.7644145190758 LTS-015 chr2 96601313 96616448 15136 * character(0) 0.288843631040984 11 0.115017389989514 1.01005369301575 35 0.250407684393593 4 3 1 -6.73544684712016 LTS-015 chr2 96616449 96616485 37 * character(0) 0.418 1 NA 1.091 1 NA NA NA NA NA LTS-015 chr2 96616486 116538552 19922067 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, TMEM182, COX5B, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, DUSP2, FOXD4L1, NA NA NA NA NA NA NA NA NA LTS-015 VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, PSD4, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, ASTL, LINC01191, SULT1C3, NPAS2, NPHP1, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, IL36G, STARD7, DPP10, ANKRD36B, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, PAX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, SLC35F5, TSGA10, LMAN2L, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, IL18RAP, IL1RL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.447453392796052 288 0.0575306150507577 1.10418381945145 12282 0.258779063552538 4 2 2 -6.97878145321143 LTS-015 NA NA NA NA LTS-015 chr2 116538553 116539867 1315 * DPP10 NA 0 NA 1.403 1 NA NA NA NA NA LTS-015 chr2 116539868 119604479 3064612 * c(EN1, INSIG2, CCDC93, DPP10, DDX18) 0.380593441094119 11 0.063981247252613 1.34956976590227 544 0.316272890123132 5 3 2 -6.86074651348036 LTS-015 chr2 119604480 119604645 166 * EN1 NA 0 NA 1.186 1 NA NA NA NA NA LTS-015 chr2 119604646 132111127 12506482 * c(RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR4783, MAP3K2, TUBA3E, CNTNAP5, FAM168B, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, CLASP1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, TFCP2L1, GYPC, CYP27C1, GPR148, INHBB, LOC389033, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, POLR2D, PLEKHB2, STEAP3, WDR33, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, NA NA NA NA NA NA NA NA NA LTS-015 POTEJ, TSN, POTEF, TMEM185B, SAP130, MZT2B, TMEM177, AMMECR1L, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, CCDC74B, IMP4, HS6ST1) 0.438603624613542 115 0.0643982673843424 1.13517738135645 5645 0.286414960779201 4 2 2 -6.74296606712988 LTS-015 NA NA NA NA LTS-015 chr2 132111128 132201395 90268 * c(WTH3DI, LINC01120, NOC2LP2, PLEKHB2) 0.064 1 NA 1.09573168217804 86 0.455998826557878 4 4 0 -5.7649391546855 LTS-015 chr2 132201396 133075809 874414 * c(MIR663B, MIR4784, TUBA3D, LOC150776, C2orf27A, NOC2LP2, C2orf27B, ANKRD30BL, MZT2A, CCDC74A) 0.297683471911711 10 0.119926088348894 1.14416925787144 312 0.343950573515442 4 3 1 -6.73749426529137 LTS-015 chr2 133075810 133402607 326798 * c(LYPD1, GPR39) 0.458 1 NA 1.23022202004907 35 0.26452445042746 4 4 0 -5.77838553077989 LTS-015 chr2 133402608 135713380 2310773 * c(CCNT2-AS1, MIR3679, LYPD1, ACMSD, GPR39, NCKAP5, MGAT5, TMEM163, CCNT2) 0.466227839443162 19 0.0174701081382621 1.19419643270435 753 0.239377523412431 4 2 2 -7.77428099285902 LTS-015 chr2 135713381 137852726 2139346 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) NA 0 NA 1.06866759813068 1251 0.191622041567218 4 NA NA -5.93135554371936 LTS-015 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.376 1 NA NA NA NA NA LTS-015 chr2 137872656 143643113 5770458 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B, KYNU) 0.434479432186689 13 0.0677235140772713 1.2293262511426 978 0.559214355961067 4 2 2 -6.79346529686435 LTS-015 chr2 143643114 143676268 33155 * KYNU NA 0 NA 1.118 1 NA NA NA NA NA LTS-015 chr2 143676269 165539171 21862903 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, NA NA NA NA NA NA NA NA NA LTS-015 IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.456378528041203 101 0.0566752709445104 1.11374458899225 7886 0.245641764027551 4 2 2 -6.94798700074937 LTS-015 NA NA NA NA LTS-015 chr2 165539172 165539174 3 * character(0) NA 0 NA 1.597 1 NA NA NA NA NA LTS-015 chr2 165539175 165542581 3407 * COBLL1 0.393094926823264 2 0.11667261889578 1.5947621427704 69 0.461835600522127 8 5 3 -6.73758633681751 LTS-015 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.097 1 NA NA NA NA NA LTS-015 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.465264105442176 31 0.0258518525365184 1.14949779231068 3370 0.552434585643138 4 2 2 -7.19629367937371 LTS-015 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 1.003 1 NA NA NA NA NA LTS-015 chr2 170366321 170668986 302666 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.463216960367344 19 0.0273381467734345 1.00025978623703 583 0.243131019815393 4 2 2 -7.14161995099131 LTS-015 chr2 170668987 179972288 9303302 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, TTN-AS1, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, UBR3, ATF2, MYO3B, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, DFNB59, PDE11A, NA NA NA NA NA NA NA NA NA LTS-015 PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, SP3, TTN, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, CIR1, TLK1) 0.458175120069895 171 0.0439224838655931 1.10570549520026 9283 0.237565620199643 4 2 2 -6.94240880211959 LTS-015 NA NA NA NA LTS-015 chr2 179972289 180307783 335495 * c(ZNF385B, SESTD1) 0.472 1 NA 1.1071277522338 157 0.194140572728685 4 4 0 -5.77084229388961 LTS-015 chr2 180307784 183948321 3640538 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2) 0.452578555231332 34 0.0415243845204709 1.1011447363952 1276 0.259987939278512 4 2 2 -6.82596914268402 LTS-015 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.153 1 NA NA NA NA NA LTS-015 chr2 183951766 189908038 5956273 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.447886336711999 72 0.0380832806833344 1.19033823914328 2150 0.466248055297832 4 2 2 -6.77243634062408 LTS-015 chr2 189908039 189909882 1844 * COL5A2 NA 0 NA 1.011 1 NA NA NA NA NA LTS-015 chr2 189909883 203760987 13851105 * c(SNORD11B, LOC100130452, NEMP2, MIR3129, LOC100507140, HSPE1-MOB4, KIAA2012, OSGEPL1-AS1, CLK1, COL5A2, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, ANKAR, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, SLC40A1, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, ASNSD1, MFSD6, STRADB, NA NA NA NA NA NA NA NA NA LTS-015 WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, OSGEPL1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, PGAP1, COQ10B, FZD7, CASP8, WDR75, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, ORMDL1, BZW1) 0.462443544247727 128 0.0368411378621288 1.06452937524213 8684 0.234776839871315 4 2 2 -7.6470331117503 LTS-015 NA NA NA NA LTS-015 chr2 203760988 203761938 951 * WDR12 NA 0 NA 1.21 1 NA NA NA NA NA LTS-015 chr2 203761939 230725287 26963349 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, NA NA NA NA NA NA NA NA NA LTS-015 CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, EEF1B2, PIKFYVE, LOC200726, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, GMPPA, AGFG1, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, INO80D, PID1, ANKZF1, ASIC4, DOCK10, MREG, WDR12, PECR, C2orf83, MFF, CYP20A1, PTH2R, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, RAPH1, NBEAL1, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, CARF, NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, DNER, TRIP12, CD28, TTLL4) 0.447433983102599 271 0.0639267407345977 1.13272962803368 17230 0.276205088161022 4 2 2 -6.76763363328067 LTS-015 NA NA NA NA LTS-015 chr2 230725288 230744646 19359 * TRIP12 NA 0 NA 0.931 1 NA NA NA NA NA LTS-015 chr2 230744647 231033644 288998 * c(FBXO36, SLC16A14, TRIP12) 0.3778867043387 3 0.121623736718345 0.864566023755271 163 0.1578840468948 3 2 1 -6.75316867210826 LTS-015 chr2 231033645 242836535 11802891 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, ALPI, ALPP, ALPPL2, NA NA NA NA NA NA NA NA NA LTS-015 C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, ATG16L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PPP1R7, USP40, HJURP, HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SP100, SPP2, SCARNA6, SCARNA5, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.45189374256741 333 0.0609862208403291 1.11459426430158 11751 0.299973189133686 4 2 2 -6.8110074904889 LTS-015 NA NA NA NA LTS-015 chr2 242836536 243037215 200680 * LOC728323 NA 0 NA 1.16643573617446 25 0.146131139734144 4 NA NA -5.76612881715895 LTS-015 chr3 239351 1262474 1023124 * c(CHL1, CNTN6) 0.293 1 NA 0.987331590577323 229 0.180913653913612 3 3 0 -5.91207655065464 LTS-015 chr3 1262475 4461767 3199293 * c(CNTN4-AS2, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.407454018001736 19 0.0497198584821536 0.98299258176232 717 0.240455132710598 3 2 1 -7.38472069509155 LTS-015 chr3 4461768 4461772 5 * SUMF1 NA 0 NA 0.891 1 NA NA NA NA NA LTS-015 chr3 4461773 5257804 796032 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.367817286549517 6 0.0637610121207832 0.862023146268988 662 0.18915521594984 3 2 1 -6.76270458656657 LTS-015 chr3 5257805 5257823 19 * EDEM1 NA 0 NA 0.921 1 NA NA NA NA NA LTS-015 chr3 5257824 8810118 3552295 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.375966421134946 24 0.0420995197741897 1.00116251838005 578 0.241580374279434 3 2 1 -7.14712773661773 LTS-015 chr3 8810119 8817115 6997 * OXTR NA 0 NA 0.922 1 NA NA NA NA NA LTS-015 chr3 8817116 35723430 26906315 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, PDCD6IP, SRGAP3-AS3, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, ARPC4-TTLL3, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, PRRT3-AS1, SLC6A1-AS1, OSBPL10-AS1, ARPC4, TADA3, CRTAP, ATG7, ARPP21, CMTM7, OSBPL10, FANCD2OS, LRRC3B, GALNT15, CCR4, KCNH8, TRIM71, CHCHD4, METTL6, TAMM41, IL17RE, SGO1, PP2D1, EFHB, CPNE9, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, FGD5, CIDECP, DAZL, NA NA NA NA NA NA NA NA NA LTS-015 STT3B, FANCD2, FBLN2, CAND2, CLASP2, GPD1L, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, FBXL2, CNOT10, THUMPD3, SUSD5, HACL1, TTLL3, GLB1, LSM3, RBMS3, NKIRAS1, LINC00692, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, HRH1, LOC339862, GADL1, ZNF860, COL6A4P1, TPRXL, IRAK2, LHFPL4, VENTXP7, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, DYNC1LI1, CCDC174, GHRL, PPARG, CMTM6, OXSM, SETD5, TMEM40, NGLY1, EMC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BRK1, RAD18, RAB5A, RAF1, RARB, RPL15, RPL32, SATB1, CIDEC, SEC13, RBSN, AZI2, TMPPE, MTMR14, MRPS25, THRB-AS1, LINC00693, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TGFBR2, THRB, TIMP4, TOP2B, NR2C2, UBE2E1, UBE2E2, UBP1, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, ZNF385D, HDAC11, TSEN2, GRIP2, COLQ, EOMES, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, VGLL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TBC1D5, TATDN2, SRGAP3, IQSEC1, NR1D2) 0.368384244205219 288 0.0554197511651079 0.907719046435303 13528 0.433399989214072 3 2 1 -6.73893748511271 LTS-015 NA NA NA NA LTS-015 chr3 35723431 35724313 883 * ARPP21 NA 0 NA 1.374 1 NA NA NA NA NA LTS-015 chr3 35724314 36873669 1149356 * c(ARPP21, MIR128-2, STAC, DCLK3, TRANK1) 0.341429516299181 12 0.0359405021802659 1.04270148844302 447 0.239827969723397 3 2 1 -7.20930798513629 LTS-015 chr3 36873670 36873674 5 * TRANK1 NA 0 NA 0.841 1 NA NA NA NA NA LTS-015 chr3 36873675 53919133 17045459 * c(SNORD19B, LINC00696, ACVR2B-AS1, NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, PARP3, MIR4271, KRBOX1, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, CTDSPL, EIF1B, TRAIP, ARIH2, NPRL2, CXCR6, CSPG5, CCR9, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, SCN11A, TUSC2, TWF2, CISH, ZNF501, NA NA NA NA NA NA NA NA NA LTS-015 GPR62, CCR1, CCR3, CCR5, CCR8, ACKR2, COL7A1, LYZL4, KLHL40, TMEM42, IQCF1, GLYCTK, PPM1M, LSMEM2, CTNNB1, CCDC12, CCDC13, CX3CR1, CYP8B1, DAG1, XIRP1, DOCK3, DUSP7, CELSR3, TTC21A, KLHDC8B, ALAS1, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, RAD54L2, STAB1, NBEAL2, KLHL18, LARS2, NAT6, ZNF620, ABHD14A, POC1A, TMEM158, NDUFAF3, ALS2CL, TMIE, MYRIP, PTPN23, DNAH1, HIGD1A, GNL3, AMT, GNAI2, GNAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GOLGA4, XCR1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, ACAA1, APEH, HYAL1, CCDC36, C3orf35, PRSS42, ZNF445, IMPDH2, ITGA9, ITIH1, ITIH3, ITIH4, TOPAZ1, C3orf62, TMEM110, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, RPSA, IQCF3, LTF, MIRLET7G, MIR135A1, MIR138-1, MIR191, MIR26A1, MAP4, MLH1, MOBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 EIF1B-AS1, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYD88, MYL3, NKTR, MIR425, VILL, ABHD5, C3orf18, SS18L2, SHISA5, ZDHHC3, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLCD1, PLXNB1, TLR9, LZTFL1, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, SLC25A38, ULK4, ANO10, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, PRKCD, DCP1A, GLT8D1, ZKSCAN7, SEMA3G, KIF15, PCBP4, SNORA6, PTH1R, KIAA1143, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 HHATL, WDR48, QARS, SNORA62, RPL29, SCN5A, SCN10A, RNF123, SEMA3F, KIF9, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, MIR564, TCTA, TDGF1, TGM4, TKT, CLEC3B, TNNC1, FAM198A, CCR2, UBA7, USP4, UQCRC1, VIPR1, ZNF35, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, LRRC2, FYCO1, CCDC51, WDR82, CAMP, BAP1, RTP3, LRRC2-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 HYAL3, ATRIP, NICN1, MON1A, ABHD14B, POMGNT2, HYAL2, CCK, BSN, LIMD1, UCN2, CCRL2, RPL14, SEC22C, RRP9, ZNF502, RFT1, LRRFIP2, CACNA2D2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ACTR8, ACY1, ENTPD3, DCAF1, IP6K1, EPM2AIP1, TRANK1, CDC25A, DLEC1, EXOG, XYLB, OXSR1) 0.365267132963806 312 0.0564679659029897 0.917544916389623 25848 0.192036040843901 3 2 1 -6.80799105994639 LTS-015 NA NA NA NA LTS-015 chr3 53919134 55733587 1814454 * c(CACNA2D3-AS1, ERC2, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, ESRG) 0.361982225243115 19 0.0628695856143623 1.0200478625851 437 0.22221723846427 3 2 1 -7.04744347149645 LTS-015 chr3 55733588 58625917 2892330 * c(MIR3938, ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.3414923641584 97 0.074887699429033 0.893374083751764 2998 0.206716496182211 3 2 1 -6.79298615988005 LTS-015 chr3 58625918 69987614 11361697 * c(LINC00994, MIR3136, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, ARL6IP5, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, FAM19A4, PRICKLE2, C3orf67, FHIT, FRMD4B, LRIG1, EOGT, LINC00698, FAM19A1, MITF, FEZF2, LMOD3, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, TMF1, THOC7, KBTBD8, CADPS, SUCLG2, UBA3, MAGI1, PSMD6) 0.370099484432108 51 0.0556894822329365 0.975635325041662 3378 0.233204689161461 3 2 1 -7.417454835761 LTS-015 chr3 69987615 69988199 585 * MITF NA 0 NA 1.323 1 NA NA NA NA NA LTS-015 chr3 69988200 70016715 28516 * MITF NA 0 NA 1.4044997883093 94 0.410285187432242 5 NA NA -5.76442110014287 LTS-015 chr3 70016716 74315580 4298865 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.382183740629701 21 0.0624646566734608 0.947346339285157 1068 0.240302126588094 3 2 1 -6.88435720002226 LTS-015 chr3 74315581 75263621 948041 * CNTN3 NA 0 NA 0.999193024525273 109 0.202969536772463 3 NA NA -5.90412785855396 LTS-015 chr3 75263622 75386334 122713 * character(0) NA 0 NA 1.243 1 NA NA NA NA NA LTS-015 chr3 75386335 75679988 293654 * c(MIR1324, FAM86DP) 0.079 1 NA 2.02190682374836 4 1.28735193323349 8 8 0 -5.76465452824708 LTS-015 chr3 75679989 75716314 36326 * MIR1324 0.219793779909987 33 0.130379080168003 1.77306854175192 91 0.784045357481646 10 8 2 -6.73831172211224 LTS-015 chr3 75716315 75716331 17 * character(0) 0.359 1 NA 0.946 1 NA NA NA NA NA LTS-015 chr3 75716332 89530057 13813726 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.23663322520205 204 0.113844670504251 1.01680646630324 1928 0.350682469814275 4 3 1 -7.68851024118935 LTS-015 chr3 89530058 90283666 753609 * EPHA3 NA 0 NA 1.00589429612472 49 0.22098212097162 3 NA NA -5.87140273214358 LTS-015 chr3 93591838 93593119 1282 * PROS1 0.482 1 NA 1.08915390743125 25 0.193693073357481 4 4 0 -5.76446360890666 LTS-015 chr3 93593120 94225760 632641 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.352 1 NA 1.17682122565318 346 0.251992786962729 4 4 0 -5.76854998846685 LTS-015 chr3 96070041 98620372 2550332 * c(ST3GAL6-AS1, ST3GAL6, CRYBG3, DCBLD2, CPOX, GABRR3, OR5K1, OR5H1, GPR15, EPHA6, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2, ARL6, MINA) 0.356946721565059 28 0.0444484720397301 0.893653993335592 1212 0.219320223513074 3 2 1 -6.75306958566544 LTS-015 chr3 98620373 98620524 152 * DCBLD2 NA 0 NA 1.04400929175342 3 0.110273901415219 4 NA NA -5.76447516050255 LTS-015 chr3 99509444 99515750 6307 * c(MIR548G, COL8A1) 0.248 1 NA 1.50871137735413 61 0.266467882193027 6 6 0 -5.76474782234278 LTS-015 chr3 99515751 100664529 1148779 * c(MIR548G, MIR3921, TFG, FILIP1L, ABI3BP, LNP1, TMEM45A, TBC1D23, NIT2, TMEM30CP, CMSS1, ADGRG7, TOMM70) 0.176059883799519 15 0.0451227954216787 1.69012395572482 1138 0.642685062116369 7 6 1 -6.751522695881 LTS-015 chr3 100664530 100712121 47592 * ABI3BP NA 0 NA 2.496 1 NA NA NA NA NA LTS-015 chr3 100712122 101241636 529515 * c(FAM172BP, ABI3BP, IMPG2, SENP7) 0.177 1 NA 2.12408468891761 301 0.515725357902879 8 8 0 -5.7644123222928 LTS-015 chr3 101241637 101486920 245284 * c(ZBTB11-AS1, FAM172BP, ZBTB11, PDCL3P4, TRMT10C, PCNP, RPL24, CEP97) 0.0690355653114338 5 0.0155627761019684 3.86744350162666 433 0.875101226893883 19 18 1 -6.74248300061422 LTS-015 chr3 101486921 101489420 2500 * character(0) NA 0 NA 4.03911315390807 39 0.720617204343389 16 NA NA -5.76441031482913 LTS-015 chr3 101489421 101504263 14843 * NXPE3 NA 0 NA 0.938 1 NA NA NA NA NA LTS-015 chr3 101504264 101579208 74945 * c(NFKBIZ, NXPE3) NA 0 NA 0.905616390804908 171 0.163518266653643 3 NA NA -5.76443007560551 LTS-015 chr3 101579209 101579291 83 * NFKBIZ NA 0 NA 1.317 1 NA NA NA NA NA LTS-015 chr3 101579292 105264176 3684885 * c(ZPLD1, LOC152225, ALCAM, NFKBIZ, MIR548A3) 0.412 1 NA 1.1304930028103 179 0.380696073456555 4 4 0 -5.76732977370331 LTS-015 chr3 105264177 120044612 14780436 * c(ZBTB20-AS1, LINC00882, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, HHLA2, LRRC58, CD200R1, ADPRH, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, GPR156, DRD3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, MORC1, TUSC7, LINC00636, SLC9C1, GTPBP8, TAGLN3, GSK3B, DUBR, TMPRSS7, CD200R1L, FLJ22763, LINC01205, LSAMP, CD200, TRAT1, TIMMDC1, NA NA NA NA NA NA NA NA NA LTS-015 PLA1A, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, IFT57, DPPA4, TMEM39A, ABHD10, CFAP44, POGLUT1, BBX, ARHGAP31, CCDC191, KIAA1524, POPDC2, ATG3, LINC00488, MIR567, MIR568, UPK1B, ZNF80, ZBED2, C3orf52, QTRT2, NAA50, RETNLB, CCDC54, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, CD80, CD47, GUCA1C, DZIP3) 0.454237165867663 126 0.0429647629708678 1.12745470097542 7323 0.407435667446271 4 2 2 -6.79869404910831 LTS-015 NA NA NA NA LTS-015 chr3 120044613 120044618 6 * LRRC58 NA 0 NA 1.233 1 NA NA NA NA NA LTS-015 chr3 120044619 120114914 70296 * c(FSTL1, LRRC58, MIR198) 0.470019504927246 6 0.0132916013582513 1.27687969343295 200 0.296124053481394 4 2 2 -8.6822662062734 LTS-015 chr3 120114915 120115286 372 * FSTL1 0.482 1 NA 1.60083673041846 7 0.343262637196707 6 6 0 -5.76441091611187 LTS-015 chr3 120115287 120321350 206064 * c(FSTL1, NDUFB4) 0.39 1 NA 1.32658358861309 90 0.460571892368553 5 5 0 -5.76568030838579 LTS-015 chr3 120321351 120346934 25584 * character(0) NA 0 NA 6.922 1 NA NA NA NA NA LTS-015 chr3 120346935 120501934 155000 * c(RABL3, GTF2E1, HGD) 0.143137213416665 6 0.00915787457146398 4.40787113570721 248 1.16895505764722 16 14 2 -6.77253323988959 LTS-015 chr3 120501935 120628316 126382 * STXBP5L NA 0 NA 1.224 1 NA NA NA NA NA LTS-015 chr3 120628317 121043357 415041 * STXBP5L 0.437010400545849 2 0.0473761543394986 1.18634159113185 94 0.213760227887018 4 2 2 -6.74520061576824 LTS-015 chr3 121043358 121339354 295997 * c(POLQ, ARGFX, FBXO40, STXBP5L) 0.478 1 NA 1.17834834271154 419 0.230847603366758 4 4 0 -5.76695182410067 LTS-015 chr3 121339355 122598293 1258939 * c(CCDC58, CSTA, DTX3L, PARP15, FAM162A, GOLGB1, ILDR1, HCLS1, KPNA1, FBXO40, WDR5B, PARP14, EAF2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, CD86, IQCB1) 0.459980769966578 31 0.0329286292404636 1.16492951476954 2110 0.320169427109882 4 2 2 -6.91546393088019 LTS-015 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.293 1 NA NA NA NA NA LTS-015 chr3 122598385 141161866 18563482 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-015 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.454783022894625 223 0.0477502990531948 1.21585022569495 13557 0.257503339317389 4 2 2 -7.31152653906767 LTS-015 NA NA NA NA LTS-015 chr3 141161867 142422878 1261012 * c(GRK7, ZBTB38, GK5, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, RNF7) 0.453336043159416 18 0.0445275856335479 1.12543340452859 1457 0.259795837560267 4 2 2 -6.77787413112662 LTS-015 chr3 142422879 142423323 445 * PLS1 NA 0 NA 2.229 1 NA NA NA NA NA LTS-015 chr3 142423324 187451633 45028310 * c(WWTR1-AS1, LOC100128164, LOC100131635, MIR1224, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, ABCC5-AS1, KCNAB1-AS2, KCNAB1-AS1, ADIPOQ-AS1, LINC01014, SLC9A9-AS1, LOC101243545, ALG3, KCNMB2, IGF2BP2, PDCD10, RNF13, TM4SF18, RPL39L, MED12L, CLRN1-AS1, AP2M1, CLCN2, AADAC, DNAJC19, NA NA NA NA NA NA NA NA NA LTS-015 OTOL1, FAM131A, ERICH6, RTP1, CP, CPA3, CPB1, CRYGS, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, DGKG, SPTSSB, DHX36, HTR3C, AGTR1, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, AADACP1, EPHB3, C3orf58, ETV5, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, U2SURP, VPS8, LOC253573, NAALADL2, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, GPR160, FETUB, LAMP3, KCNMB3, SERP1, GOLIM4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SLC9A9, HTR3E, IGSF10, C3orf33, C3orf70, TRIM59, GPR171, GYG1, SCHIP1, HRG, CCDC39, LINC00880, EHHADH-AS1, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, NMRAL1P1, RTP2, SOX2-OT, IL12A, KNG1, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, CLDN11, P2RY1, NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, DNAJB11, PFN2, SERPINI1, SERPINI2, PIK3CA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PLD1, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, PLSCR2, PSMD2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, TMEM14EP, LINC01330, IGF2BP2-AS1, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 FNDC3B, SIAH2, ST6GAL1, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SST, SCARNA7, SNORA81, SNORD66, MIR551B, MIR569, TERC, THPO, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, ZIC4, HPS3, ACTRT3, GFM1, ACTL6A, CHRD, B3GALNT1, TNFSF10, GMPS, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, SLC33A1, EGFEM1P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ADIPOQ, CAMK2N2, CHST2, ECE2, TSC22D2, P2RY14) 0.453239522869942 427 0.0558151721602885 1.19115331172964 21196 0.2828630614516 4 2 2 -7.22014862674407 LTS-015 NA NA NA NA LTS-015 chr3 187451634 187897005 445372 * c(LPP-AS2, FLJ42393, LPP, BCL6) NA 0 NA 1.35 1 NA NA NA NA NA LTS-015 chr3 187897006 188608096 711091 * c(FLJ42393, LPP) 0.418985652468377 3 0.0500632932729493 1.409810967262 463 0.648549620650348 5 3 2 -6.75961314946849 LTS-015 chr3 188608097 194077278 5469182 * c(MIR944, DPPA2P3, LINC00887, SNAR-I, OPA1-AS1, TPRG1-AS2, CLDN16, LRRC15, TMEM207, CPN2, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, TPRG1, HES1, OSTN, ATP13A5, IL1RAP, LPP, OPA1, P3H2, HRASLS, GMNC, LOC647323, ATP13A4, MGC2889, TP63, CLDN1) 0.445731652202833 83 0.0711738382500824 1.25847886239945 2081 0.738462021364564 4 2 2 -6.78706146226019 LTS-015 chr3 194077279 195295661 1218383 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.452150924485342 18 0.0414260503434593 1.1495387429573 1034 0.238621825429548 4 2 2 -6.77148315223026 LTS-015 chr3 195295662 195345953 50292 * APOD 0.251 1 NA 1.28740890620963 52 0.531788008205518 5 5 0 -5.76503716265352 LTS-015 chr3 195345954 195452017 106064 * c(MUC20, MIR570, SDHAP2) 0.407555639060049 11 0.0591343616459392 1.07471335674925 85 0.727872281559962 5 3 2 -6.74110959781513 LTS-015 chr3 195452018 195452618 601 * MUC20 NA 0 NA 1.931 1 NA NA NA NA NA LTS-015 chr3 195452619 195476016 23398 * c(MUC20, MUC4) 0.335466799370095 14 0.0543923980629 1.65921499710164 87 2.30955727406616 18 12 6 -6.73888595328962 LTS-015 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.084 1 NA NA NA NA NA LTS-015 chr3 195477782 196675274 1197493 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, SLC51A, FBXO45, SENP5, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MUC4, PAK2, PCYT1A, PIGX, TFRC, PIGZ, CEP19) 0.408275746897732 50 0.108470669410901 1.13145749471918 1990 0.245547324123793 4 2 2 -6.79128887955569 LTS-015 chr3 196675275 197769542 1094268 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, DLG1, LOC220729, MELTF, RPL35A, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.374324506599333 19 0.0944563700761003 1.32675596406256 1167 0.284906597646886 5 3 2 -6.82788963432501 LTS-015 chr3 197769543 197770512 970 * LMLN NA 0 NA 1.32385401278048 23 0.246501505258815 5 NA NA -5.76443287156084 LTS-015 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.297 1 NA 0.52915505312167 13 0.125580906600343 2 2 0 -5.77745797998657 LTS-015 chr4 60336 3227419 3167084 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, NA NA NA NA NA NA NA NA NA LTS-015 ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.434916093855295 97 0.0731315557169459 0.640237666642912 5191 0.147603558319079 2 1 1 -6.80823282141698 LTS-015 NA NA NA NA LTS-015 chr4 3227420 3227457 38 * HTT NA 0 NA 0.802 1 NA NA NA NA NA LTS-015 chr4 3227458 3534331 306874 * c(DOK7, HTT, HGFAC, MSANTD1, LRPAP1, RGS12) 0.455463202331717 42 0.0252360286665145 0.691056929130233 765 0.156080062494733 2 1 1 -6.92501148599798 LTS-015 chr4 3534332 3589553 55222 * LINC00955 NA 0 NA 0.865 1 NA NA NA NA NA LTS-015 chr4 3589554 3591786 2233 * LINC00955 0.448367036098906 22 0.0462944883725877 1.05666862847661 52 0.281547267570331 4 2 2 -6.74576716308981 LTS-015 chr4 3591787 3768424 176638 * c(LOC100133461, ADRA2C, LINC00955) NA 0 NA 0.711 1 NA NA NA NA NA LTS-015 chr4 3768425 37857437 34089013 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR4275, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4801, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, ARAP2, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, NA NA NA NA NA NA NA NA NA LTS-015 LCORL, CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, FAM86EP, RBPJ, KCNIP4-IT1, SMIM20, USP17L6P, USP17L9P, DTHD1, MIR218-1, CPEB2-AS1, MSX1, PCDH7, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PGM2, C4orf19, TBC1D19, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, NWD2, TBC1D14, SORCS2, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, RELL1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, CCKAR, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.443508114834168 258 0.0700905143001117 0.667558189276919 10354 0.158026146498906 2 1 1 -6.87421772444877 LTS-015 NA NA NA NA LTS-015 chr4 37857438 37863042 5605 * PGM2 NA 0 NA 0.534 1 NA NA NA NA NA LTS-015 chr4 37863043 40817497 2954455 * c(MIR4802, UGDH-AS1, TLR6, PTTG2, LIAS, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, LOC401127, KLHL5, KLF3, RBM47, PGM2, CHRNA9, N4BP2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.453037760995123 60 0.0359379723009986 0.628993015402719 2548 0.58183838792752 2 1 1 -6.80391112535809 LTS-015 chr4 40817498 41701761 884264 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1) 0.442077125702344 5 0.057345444457254 0.720036555620654 433 0.153891448436243 2 1 1 -6.90524257111253 LTS-015 chr4 41701762 44708093 3006332 * c(ATP8A1, SLC30A9, GNPDA2, SHISA3, LIMCH1, DCAF4L1, YIPF7, KCTD8, BEND4, GRXCR1, TMEM33, GUF1, PHOX2B) 0.441154258749947 44 0.0364155238950325 0.641291194715344 1358 0.164086919347932 2 1 1 -6.78115079339407 LTS-015 chr4 44708094 46264176 1556083 * c(GNPDA2, GABRA2, GABRG1) NA 0 NA 0.673347778752313 289 0.181692250494758 2 NA NA -5.77794435446629 LTS-015 chr4 46264177 46305441 41265 * GABRA2 NA 0 NA 1.035 1 NA NA NA NA NA LTS-015 chr4 46305442 46334702 29261 * GABRA2 0.353 1 NA 0.921902097150202 19 0.158921805775284 3 3 0 -5.76472450078171 LTS-015 chr4 46334703 48988450 2653748 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.348286130498438 36 0.077155049007188 0.891160110364172 2076 0.239101121331293 3 2 1 -6.76363201960115 LTS-015 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.840891545306865 87 0.1938344890414 3 NA NA -5.77044479713818 LTS-015 chr4 52709193 52780235 71043 * DCUN1D4 0.395 1 NA 0.95432824047018 85 0.223972179019605 3 3 0 -5.76705805509328 LTS-015 chr4 52780236 68906584 16126349 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, NA NA NA NA NA NA NA NA NA LTS-015 SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.370476862891701 84 0.0769661419402292 0.894588494007547 4498 0.232591264290154 3 2 1 -6.75057789319842 LTS-015 NA NA NA NA LTS-015 chr4 68906585 68907460 876 * UBA6-AS1 NA 0 NA 0.28355088702271 42 0.223368890940941 1 NA NA -5.76593666038352 LTS-015 chr4 68907461 90875462 21968002 * c(FAM47E, FTLP10, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, TMPRSS11B, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, NA NA NA NA NA NA NA NA NA LTS-015 WDFY3, CNOT6L, C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, UBA6-AS1, LOC550113, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, UGT2B17, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.357829274083768 390 0.0691521826283894 0.89380050685689 13633 0.299519283517207 3 2 1 -6.75225240753246 LTS-015 NA NA NA NA LTS-015 chr4 90875463 98109018 7233556 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.356015080490873 25 0.0653167155736825 0.966944257185551 1357 0.309678699731033 3 2 1 -6.95086522781696 LTS-015 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-015 chr4 98480011 119431067 20951057 * c(SNHG8, MIR1243, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, EIF4E, ENPEP, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, CFI, LRIT3, PCNAP1, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, NA NA NA NA NA NA NA NA NA LTS-015 PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK) 0.359609034021671 134 0.0623479958334363 0.895761147017739 8627 0.321903365039963 3 2 1 -6.74342638110927 LTS-015 NA NA NA NA LTS-015 chr4 119431068 119431149 82 * character(0) NA 0 NA 0.689 1 NA NA NA NA NA LTS-015 chr4 119431150 119465564 34415 * CEP170P1 0.33 1 NA 0.552168222629721 90 0.370377515003914 2 2 0 -5.76909601208161 LTS-015 chr4 119465565 119472232 6668 * CEP170P1 NA 0 NA 1.041 1 NA NA NA NA NA LTS-015 chr4 119472233 155155745 35683513 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, LINC01095, MIR4799, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, PRDM5, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZNF827, SH3D19, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SYNPO2, EDNRA, ELF2, TIGD4, TMEM154, FABP2, FGF2, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, LINC01091, RNF175, GYPA, NA NA NA NA NA NA NA NA NA LTS-015 GYPB, GYPE, ANXA2P1, ANXA5, PRSS48, IL2, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, MYOZ2, GATB, EXOSC9, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, LARP1B, BBS7, FBXW7, MAML3, TMEM184C, ANKRD50, RNF150, PCDH10, METTL14, IL21, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, CEP170P1, LOC645513, HHIP-AS1, C4orf51, TLR2, TRPC3, CETN4P, FAM160A1, UCP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 NDNF, FAT4, ARHGAP10, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PRMT9, LRBA, SEC24D) 0.358048007030495 202 0.064972306756713 0.894552014738573 12208 0.309248107558446 3 2 1 -6.75629134038984 LTS-015 NA NA NA NA LTS-015 chr4 155155746 175413172 20257427 * c(MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ANXA10, KLHL2, SCRG1, CLCN3, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GRIA2, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC340017, TRIM61, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, DCHS2, PPID, HPF1, MARCH1, TMEM144, NA NA NA NA NA NA NA NA NA LTS-015 TMA16, DDX60, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, MSMO1, MIR578, TDO2, TLL1, HAND2-AS1, MAP9, CEP44, TKTL2, CBR4, SAP30, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.362037197272051 109 0.0680774116644652 0.92338983301162 6454 0.356026414504713 3 2 1 -6.78354869465647 LTS-015 NA NA NA NA LTS-015 chr4 175413173 184241686 8828514 * c(MIR1305, ADAM29, WDR17, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, GPM6A, LINC01098, HPGD, FAM92A1P2, CLDN22, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, GLRA3, WWC2, LOC90768) 0.309931366890704 51 0.0806745726153332 0.995698191578834 1741 0.248882149964654 3 2 1 -7.72456142262542 LTS-015 chr4 184241687 186536317 2294631 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.338637948169916 48 0.0515082750013726 0.92912792700365 1857 0.237095401394085 3 2 1 -6.90043796762665 LTS-015 chr4 186536318 186539662 3345 * SORBS2 NA 0 NA 1.088 1 NA NA NA NA NA LTS-015 chr4 186539663 190426496 3886834 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.34436195551891 33 0.0460881895079554 1.02734826038995 1234 0.211771182421993 3 2 1 -7.61086975088003 LTS-015 chr4 190426497 190861967 435471 * character(0) NA 0 NA 0.778 1 NA NA NA NA NA LTS-015 chr4 190861968 190946092 84125 * FRG1 0.392599233959615 10 0.0769556871048383 0.788411230584207 60 0.267420095252082 3 2 1 -6.8252368682138 LTS-015 chr4 190946093 190981567 35475 * character(0) NA 0 NA 0.89254685812373 21 1.09092571437551 3 NA NA -5.76441233552154 LTS-015 chr5 140347 140532 186 * PLEKHG4B 0.328 1 NA 1.29796176507987 3 1.06322104945303 5 5 0 -5.76441059538056 LTS-015 chr5 140533 1816431 1675899 * c(PDCD6, MIR4277, LOC100506688, MIR4457, MIR4456, MIR4635, LOC100996325, SLC12A7, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, SLC6A19, SLC6A18, LRRC14B, NDUFS6, CEP72, AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, TERT, SDHAP3, LOC728613, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.310777294963868 73 0.0877684379845083 0.920128640271428 2419 0.259673269756941 3 2 1 -6.95482085873391 LTS-015 chr5 1816432 2747076 930645 * c(IRX2, IRX4) 0.333 1 NA 0.894078202829105 69 0.175635023704206 3 3 0 -5.76600204668436 LTS-015 chr5 2747077 38528939 35781863 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, MIR4458, MIR4454, MIR4637, MIR4636, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, ADCY2, SUB1, PAPD7, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAP, UGT3A2, ADAMTS16, DNAH5, RANBP3L, CCT5, PDZD2, FBXL7, ICE1, AMACR, LINC01018, NA NA NA NA NA NA NA NA NA LTS-015 NIPBL, RAI14, GDNF, LINC01019, LOC285692, LOC285696, DROSHA, LINC01020, LOC340107, LOC340113, IL7R, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NPR3, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, ANKH, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, SLC1A3, ANKRD33B, C5orf42, SRD5A1, TARS, MIR580, TRIO, GUSBP1, LOC729506, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LSP1P3, FASTKD3, IRX1, SPEF2, ADAMTS12, ROPN1L, MED10, OTULIN, SEMA5A, ZNF622, LMBRD2, NUP155) 0.352977978942263 201 0.0573969424706153 0.946905197905989 10660 0.304160658152741 3 2 1 -7.24934706021025 LTS-015 NA NA NA NA LTS-015 chr5 38528940 38530570 1631 * LIFR NA 0 NA 0.706 1 NA NA NA NA NA LTS-015 chr5 38530571 44389155 5858585 * c(CCDC152, LOC100132356, MIR3650, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.351211156241527 58 0.0512872177582695 0.889094349133138 3244 0.242421516249468 3 2 1 -6.78599035187814 LTS-015 chr5 44389156 44809162 420007 * MRPS30 0.334 1 NA 1.05203088368928 7 0.229386448721678 4 4 0 -5.79943639714722 LTS-015 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.03195923282644 151 0.227557104979146 4 NA NA -5.87571507875585 LTS-015 chr5 49692017 49694583 2567 * EMB 0.337 1 NA 0.838195783831415 47 0.212661566157661 3 3 0 -5.76459614957716 LTS-015 chr5 49694584 68850398 19155815 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, NA NA NA NA NA NA NA NA NA LTS-015 FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.340535483331188 147 0.0600717002397575 0.88670364276043 8190 0.227717595375386 3 2 1 -6.89483242940482 LTS-015 NA NA NA NA LTS-015 chr5 68850399 69373289 522891 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.29924937421124 39 0.351009909853148 5 NA NA -5.77599228600093 LTS-015 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.005 1 NA NA NA NA NA LTS-015 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.475023455979978 61 0.244330028530122 1 NA NA -5.87087412899022 LTS-015 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 1.23 1 NA NA NA NA NA LTS-015 chr5 70357051 93807270 23450220 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-015 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.346860102231658 223 0.0639574278679601 0.910439422655158 10228 0.425986815253572 3 2 1 -6.78390206791986 LTS-015 NA NA NA NA LTS-015 chr5 93807271 96369179 2561909 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.358845273081425 55 0.0466033264227998 0.851799138606592 2258 0.183356482393443 3 2 1 -6.89072547513671 LTS-015 chr5 96369180 96371342 2163 * character(0) NA 0 NA 1.30007074946293 44 0.247135953887768 5 NA NA -5.76450512147416 LTS-015 chr5 96371343 126205172 29833830 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, PAM, NA NA NA NA NA NA NA NA NA LTS-015 TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.347150809112833 188 0.0613408924446232 0.910316772464042 8359 0.321292608203377 3 2 1 -6.79311656246708 LTS-015 NA NA NA NA LTS-015 chr5 126205173 130494762 4289590 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.311146822969439 10 0.144318936926363 0.967912709506743 1534 0.266813027238958 3 2 1 -6.98569224889868 LTS-015 chr5 130494763 134331918 3837156 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, NA NA NA NA NA NA NA NA NA LTS-015 DDX46) 0.346122820548505 44 0.0519211469136493 0.861560090493473 4472 0.187671204300299 3 2 1 -6.94439407618595 LTS-015 NA NA NA NA LTS-015 chr5 134331919 134331921 3 * CATSPER3 0.324 1 NA 1.404 1 NA NA NA NA NA LTS-015 chr5 134331922 137427129 3095208 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, PKD2L2, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, PITX1, TRPC7, SPOCK1, TGFBI, WNT8A, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.361761502818141 10 0.0727320806491575 0.939480610322278 1708 0.211264556657525 3 2 1 -6.80018815270337 LTS-015 chr5 137427130 140857465 3430336 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, PCDHGA12, LRRTM2, PCDHB5, GFRA3, SNORD63, SNORA74A, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, PCDHGC3, MZB1, PAIP2, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB18P, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, NA NA NA NA NA NA NA NA NA LTS-015 PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PCDHB16, PURA, ECSCR, SIL1, TAF7, SNHG4, UBE2D2, WNT8A, SLC4A9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 NME5, SLC25A2, PCDHB19P, PSD2, CYSTM1, EIF4EBP3, PCDHGB4, CDC23, CD14, NRG2, PCDHGA8, PCDHA9, MATR3, CDC25C, SLC23A1) 0.355231075667252 47 0.0749468390070641 0.881320784458217 6382 0.187771706310467 3 2 1 -6.77480210509766 LTS-015 NA NA NA NA LTS-015 chr5 140857466 175386657 34529192 * c(GNPDA1, FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, LOC100505658, MIR4634, MIR378E, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, SLU7, CPLX2, FAXDC2, FAM114A2, TCERG1, SPINK5, SOX30, SYNPO, PWWP2A, C1QTNF2, SCGB3A2, C5orf47, PPARGC1B, C5orf58, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, NKX2-5, SLC36A2, SPINK13, CREBRF, NA NA NA NA NA NA NA NA NA LTS-015 JAKMIP2-AS1, PPP1R2P3, FAM71B, PRELID2, SH3RF2, PLAC8L1, RNF145, ADRB2, DIAPH1, DOCK2, DPYSL3, DRD1, SLC26A2, DUSP1, EBF1, STK32A, SLC36A1, FABP6, FAT2, FGF1, ABLIM3, FOXI1, HMGXB3, ARHGAP26, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, PCDHGA12, CCDC69, HAVCR1, CYFIP2, IL17B, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, RELL2, LOC285626, LOC285627, LOC285629, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, NDST1, HTR4, ARSI, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, C5orf46, ARHGEF37, LCP2, SPINK6, MIR103A1, MIR143, MIR146A, MIR218-2, SPINK14, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, PCDH1, PCDHGC3, RPL26L1, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, HMP19, RBM27, NEURL1B, POU4F3, SPDL1, THG1L, PPP2R2B, GALNT10, RBM22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, NMUR2, ERGIC1, TENM2, KCTD16, HMHB1, RARS, RPS14, ZBED8, GRXCR2, SPINK9, ARAP3, SGCD, RANBP17, SLC6A7, SLIT3, BNIP1, SPARC, SPINK1, SNORA74B, STK10, MIR585, TCOF1, TTC1, CARMN, LOC729080, PCYOX1L, CCNJL, SH3TC2, PANK3, SAP30L, CPEB4, NDFIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, THOC3, SPINK7, HAVCR2, SMIM3, STC2, PCDHGB4, ADAM19, FGF18, HDAC3, FCHSD1, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, RNF14, CLINT1, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.349048481471761 380 0.0650874981782866 0.914635449771922 19454 0.296763387107907 3 2 1 -6.80800204015573 LTS-015 NA NA NA NA LTS-015 chr5 175386658 175387381 724 * THOC3 NA 0 NA 0.261951906341408 40 0.193759029566267 0 NA NA -5.76649526360464 LTS-015 chr5 175387382 175394264 6883 * THOC3 NA 0 NA 0.527258089600133 43 0.374955905860913 2 NA NA -5.76586602666308 LTS-015 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.125 1 NA NA NA NA NA LTS-015 chr5 175395033 180374817 4979785 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-015 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.343599793449831 161 0.0751408051965779 0.894847716097202 6978 0.262372033852306 3 2 1 -6.78193037782209 LTS-015 NA NA NA NA LTS-015 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.806 1 NA NA NA NA NA LTS-015 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 1.64297315508588 63 0.264916325465623 6 NA NA -5.76442497792343 LTS-015 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.997 1 NA NA NA NA NA LTS-015 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.378726070066572 8 0.0455035320450119 0.883011963810272 514 0.179086519583835 3 2 1 -6.79397278460349 LTS-015 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.962653960380737 21 0.297756995839608 3 NA NA -5.76443543421557 LTS-015 chr6 203389 335251 131863 * DUSP22 0.323 1 NA 1.23587241617992 33 0.183710545135382 4 4 0 -5.77766781987623 LTS-015 chr6 335252 5108965 4773714 * c(LOC100507194, GMDS-AS1, MIR4645, ECI2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.40286901939299 69 0.0483582644346386 1.26928886094042 2379 0.301101624244128 5 3 2 -6.99102646656209 LTS-015 chr6 5108966 5999106 890141 * c(MIR3691, FARS2, NRN1, LYRM4) NA 0 NA 1.2603150084 115 0.236510605822797 4 NA NA -5.84913704235251 LTS-015 chr6 5999107 5999238 132 * NRN1 NA 0 NA 1.072 1 NA NA NA NA NA LTS-015 chr6 5999239 6003985 4747 * NRN1 0.47 1 NA 1.04327986839099 15 0.121951395470256 4 4 0 -5.76610589567408 LTS-015 chr6 6003986 10627737 4623752 * c(SCARNA27, TFAP2A-AS1, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, SNRNP48, DSP, PIP5K1P1, F13A1, LINC00518, GCNT2, LY86-AS1, CAGE1, SLC35B3, NRN1, RREB1, BLOC1S5, BMP6, SSR1, TFAP2A, HULC, TXNDC5, RIOK1, LY86, EEF1E1) 0.458574401988665 55 0.0269376634183017 1.1747733456145 1961 0.269395768962502 4 2 2 -6.98414520405139 LTS-015 chr6 10627738 29759923 19132186 * c(TMEM170B, ZSCAN16-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, ELOVL2-AS1, LINC01012, MIR4639, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, CAP2, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, MBOAT1, HDGFL1, E2F3, EDN1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, ZSCAN23, NKAPL, TOB2P1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, GCNT2, GMPR, NA NA NA NA NA NA NA NA NA LTS-015 GPLD1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, STMND1, CASC15, ERVFRD-1, MAK, NEDD9, HCG11, GMNN, TBC1D7, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MCUR1, KIF13A, ZSCAN31, ZNF192P1, SLC17A1, SOX4, MIR548A1, BTN1A1, TPMT, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FAM65B, ZSCAN12, KIAA0319, NUP153) 0.453633866867085 273 0.041968009961868 1.10826641805632 10889 0.364060263009954 4 2 2 -6.87835494992453 LTS-015 NA NA NA NA LTS-015 chr6 29759924 29764902 4979 * character(0) 0.237 1 NA 1.07859800204512 13 0.471951974957905 4 4 0 -5.76445975202301 LTS-015 chr6 29764903 29913495 148593 * character(0) 0.353033544326326 65 0.0956983391464273 1.19162428832308 180 3.4346537733111 6 4 2 -6.73419676021246 LTS-015 chr6 29913496 29942927 29432 * character(0) 0.468 1 NA 0.932645921046743 5 0.246128624909822 3 3 0 -5.76472474050512 LTS-015 chr6 29942928 31323020 1380093 * character(0) 0.452034460501672 161 0.0546432245349562 1.10304129765294 3219 1.00935239591186 4 2 2 -6.75584374548078 LTS-015 chr6 31323021 31323202 182 * character(0) 0.203 1 NA 1.05620841882188 5 0.748067042450073 4 4 0 -5.76441143337875 LTS-015 chr6 31323203 31379823 56621 * character(0) 0.353603417031706 25 0.103441255470597 1.10810612999962 71 0.350377755327834 3 2 1 -6.75122713797609 LTS-015 chr6 31379824 31380194 371 * character(0) 0.412 1 NA 0.82848424273106 9 0.101208256141044 3 3 0 -5.76456884256014 LTS-015 chr6 31380195 31948529 568335 * character(0) 0.453094652680614 50 0.0310463774218573 1.08789141692351 2873 0.224293772857572 4 2 2 -6.83200009164157 LTS-015 chr6 31948530 31948537 8 * character(0) NA 0 NA 0.821 1 NA NA NA NA NA LTS-015 chr6 31948538 31975775 27238 * character(0) 0.461852912950183 2 0.00636396103067897 0.824599856591381 88 0.358775285281963 2 1 1 -10.0519157004573 LTS-015 chr6 31975776 31976340 565 * character(0) NA 0 NA 1.306 1 NA NA NA NA NA LTS-015 chr6 31976341 32007088 30748 * character(0) 0.348097246703937 6 0.0769042694956962 1.62967557879088 97 0.583475447035961 6 4 2 -6.73362438733155 LTS-015 chr6 32007089 32007104 16 * character(0) NA 0 NA 1.088 1 NA NA NA NA NA LTS-015 chr6 32007105 32487123 480019 * HLA-DRB5 0.448338244290462 77 0.0733214022275009 1.12740332884052 1521 0.28724953925584 4 2 2 -6.73898503260777 LTS-015 chr6 32487124 32487205 82 * HLA-DRB5 0.335 1 NA 1.13387827281479 4 0.280927036790694 4 4 0 -5.7644102071142 LTS-015 chr6 32487206 32489671 2466 * HLA-DRB5 0.345589235277683 4 0.1116154111223 1.06456601168062 8 0.222152417111702 6 4 2 -6.7396917412665 LTS-015 chr6 32489672 32489716 45 * HLA-DRB5 NA 0 NA 1.499 1 NA NA NA NA NA LTS-015 chr6 32489717 32634306 144590 * c(HLA-DQA1, HLA-DRB5) 0.338593222089037 144 0.0844971939576297 1.48152240357934 327 0.835681976039676 6 4 2 -6.74614333205931 LTS-015 chr6 32634307 32727004 92698 * character(0) 0.34931671291007 16 0.115302428421955 1.23677664022236 76 0.388725055046691 6 4 2 -6.76147911721786 LTS-015 chr6 32727005 32780914 53910 * character(0) 0.497 1 NA 1.00311883463991 26 0.178821772035304 3 3 0 -5.77568937186531 LTS-015 chr6 32780915 33035512 254598 * character(0) 0.465035595522509 27 0.0330702438098213 1.05331275827225 683 0.780677170901841 4 2 2 -7.02091378432051 LTS-015 chr6 33035513 33035860 348 * character(0) 0.427 1 NA 1.65375734910601 13 5.80325037919581 6 6 0 -5.76441013556935 LTS-015 chr6 33035861 33048457 12597 * character(0) 0.355 1 NA 1.78495494595965 53 7.87824168850919 7 7 0 -5.76441044558007 LTS-015 chr6 33048458 33053734 5277 * character(0) 0.337580789433346 22 0.0843120877367423 1.62527514343625 52 3.44757892902204 18 12 6 -6.73359878546246 LTS-015 chr6 33053735 33054619 885 * character(0) 0.28771158819312 29 0.0427589474403533 2.95106884587861 53 21.3020269398177 4 3 1 -6.73307328922258 LTS-015 chr6 33054620 33054675 56 * character(0) 0.415 1 NA 1.78200455662165 3 0.60552649267669 7 7 0 -5.76441037976246 LTS-015 chr6 33054676 33054687 12 * character(0) 0.41949607327152 2 0.00212132034355964 1.79249944485559 2 0.110308657865102 19 11 8 -7.09990642292984 LTS-015 chr6 33054688 33054711 24 * character(0) 0.399 1 NA 1.409 1 NA NA NA NA NA LTS-015 chr6 33054712 39272494 6217783 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-015 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, KCNK5, KCNK17, RNF8) 0.449777021538956 194 0.0606689820962989 1.09704688556692 8171 0.566655969475045 4 2 2 -6.76606893012453 LTS-015 NA NA NA NA LTS-015 chr6 39272495 39278664 6170 * KCNK17 NA 0 NA 1.62 1 NA NA NA NA NA LTS-015 chr6 39278665 47869448 8590784 * c(LINC01512, TOMM6, ANKRD66, MIR4647, MIR4641, MIR4642, RCAN2, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, FOXP4, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, ADGRF2, TSPO2, UNC5CL, ENPP4, CUL9, UBR2, DAAM2, GLTSCR1L, CD2AP, ZNF318, YIPF3, USP49, ADGRF1, GNMT, TNFRSF21, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, NA NA NA NA NA NA NA NA NA LTS-015 HSP90AB1, TREML1, TREML3P, SLC35B2, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, NFKBIE, NFYA, MRPL2, CYP39A1, PEX6, PGC, CLIC5, TREM2, TREM1, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, LRFN2, AARS2, XPO5, PTK7, ENPP5, PRPH2, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, BYSL, TDRG1, VEGFA, PLA2G7, TFEB, TREML2, KCNK16, TTBK1, SUPT3H, RUNX2, RRP36, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CCND3, KCNK17, ABCC10, KLC4, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.452579396111127 156 0.0704519062326309 1.17551271325899 9151 0.265231757037302 4 2 2 -6.79366951118604 LTS-015 NA NA NA NA LTS-015 chr6 47869449 49398115 1528667 * c(PTCHD4, MUT) 0.393 1 NA 1.12812703295442 35 0.215129794708749 4 4 0 -5.76943675337442 LTS-015 chr6 49398116 49399278 1163 * MUT 0.357 1 NA 1.1549662051345 25 0.331450157137791 4 4 0 -5.76441049925356 LTS-015 chr6 49399279 51609358 2210080 * c(CRISP3, C6orf141, CRISP1, DEFB110, DEFB112, DEFB113, DEFB114, GLYATL3, MUT, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.331588328631555 20 0.0531079090155129 0.943328848728594 837 0.22923300193764 3 2 1 -7.00310180919925 LTS-015 chr6 51609359 51611517 2159 * PKHD1 NA 0 NA 0.674 1 NA NA NA NA NA LTS-015 chr6 51611518 53409942 1798425 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.346673815638645 39 0.0513101363715488 0.830192067705351 1657 0.198016354039591 3 2 1 -6.99007789464406 LTS-015 chr6 53409943 53516308 106366 * KLHL31 NA 0 NA 0.933 1 NA NA NA NA NA LTS-015 chr6 53516309 56569284 3052976 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, BMP5, DST, COL21A1, MLIP) 0.352396356425792 43 0.055626363882641 0.934293772009819 1861 0.189156144918548 3 2 1 -6.82170841595037 LTS-015 chr6 56569285 56599930 30646 * DST NA 0 NA 0.715 1 NA NA NA NA NA LTS-015 chr6 56599931 57246786 646856 * c(BEND6, ZNF451, RAB23, PRIM2, KIAA1586, DST, BAG2) 0.410791317410747 13 0.0780991316147264 0.847781468886805 613 0.185377482138488 3 2 1 -6.98121934993264 LTS-015 chr6 57246787 57246815 29 * PRIM2 0.462 1 NA 1.134 1 NA NA NA NA NA LTS-015 chr6 57246816 58445594 1198779 * c(GUSBP4, PRIM2) 0.356199777724909 45 0.0804680876578606 1.18604581927993 118 0.384579139187413 3 2 1 -7.08195997565646 LTS-015 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-015 chr6 62390154 62407067 16914 * KHDRBS2 0.49 1 NA 1.36377189728288 23 0.284524636498676 5 5 0 -5.76445557698621 LTS-015 chr6 62407068 62996176 589109 * KHDRBS2 0.451763471242906 2 0.0388908729652601 1.17755339077526 55 0.282163130694342 4 2 2 -6.77659871008344 LTS-015 chr6 63921320 66204945 2283626 * c(PHF3, EYS, LOC441155, LGSN, PTP4A1) 0.3757963935325 19 0.0584977132556509 0.931069363536169 797 0.238543352336487 3 2 1 -6.77889364122333 LTS-015 chr6 66204946 69349308 3144363 * c(EYS, SLC25A51P1, ADGRB3) NA 0 NA 0.918934248510022 79 0.194736899214329 3 NA NA -5.78056109314182 LTS-015 chr6 69349309 69640402 291094 * ADGRB3 NA 0 NA 0.586 1 NA NA NA NA NA LTS-015 chr6 69640403 69724069 83667 * ADGRB3 0.156 1 NA 0.705366090336982 49 0.204549904095079 2 2 0 -5.77001082036271 LTS-015 chr6 69724070 73951866 4227797 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472, KHDC1) 0.133900041766553 41 0.0609220713739102 0.6696244291396 1733 0.182993421876441 2 2 0 -6.75566281522855 LTS-015 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.554 1 NA NA NA NA NA LTS-015 chr6 73952151 74473443 521293 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.144502423406366 20 0.0482321960607446 0.596764694277546 669 0.171872650649591 2 2 0 -6.88836459565118 LTS-015 chr6 74473444 74475664 2221 * CD109 NA 0 NA 0.75 1 NA NA NA NA NA LTS-015 chr6 74475665 85470157 10994493 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.13015670191853 39 0.0341497851715126 0.680362256428999 3910 0.172132602593482 2 2 0 -6.95627986744555 LTS-015 chr6 85470158 85472202 2045 * TBX18 NA 0 NA 0.533 1 NA NA NA NA NA LTS-015 chr6 85472203 93950863 8478661 * c(MIR4464, MIR4643, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, EPHA7, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, TBX18, CASP8AP2) 0.132385627766285 65 0.0493109004566552 0.630717061615152 3659 0.295793458310035 2 2 0 -6.84248809392359 LTS-015 chr6 93950864 105177197 11226334 * c(TSTD3, MIR2113, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.137339960837702 49 0.0436716256206904 0.67087882353618 2385 0.177549354839025 2 2 0 -6.82001691925351 LTS-015 chr6 105177198 109621494 4444297 * c(LIN28B-AS1, LOC100422737, LOC100996634, BVES, SEC63, BVES-AS1, AIM1, CCDC162P, FOXO3, LACE1, SCML4, SESN1, CEP57L1, OSTM1, LINC00222, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, NR2E1, ARMC2, RTN4IP1, SNX3, ATG5) 0.126954320508756 42 0.0635638676681843 0.621162291013883 2670 0.160213302825927 2 2 0 -7.07333924115331 LTS-015 chr6 109621495 109665191 43697 * CCDC162P 0.137 1 NA 0.591375291634158 41 0.124297322538516 2 2 0 -5.78410588750743 LTS-015 chr6 109665192 114378970 4713779 * c(TRAF3IP2, GTF3C6, SLC16A10, AK9, HS3ST5, CDK19, FYN, AMD1, GPR6, PPIL6, LINC01268, FLJ34503, HDAC2, LAMA4, MARCKS, GSTM2P1, RFPL4B, TUBE1, CDC40, REV3L, FAM229B, TRAF3IP2-AS1, MICAL1, SMPD2, METTL24, RPF2, DDO, SLC22A16, CD164, WISP3, WASF1, MFSD4B, ZBTB24, FIG4) 0.149793523125651 82 0.0388447678479341 0.631074319686195 3203 0.171712998266247 2 2 0 -7.05649617774846 LTS-015 chr6 114378971 114379222 252 * HS3ST5 NA 0 NA 0.729593949176715 6 0.064186447167607 2 NA NA -5.76479136545547 LTS-015 chr6 114379223 116325142 1945920 * c(HS3ST5, FRK) 0.274 1 NA 0.890110939552595 63 0.138450393718246 3 3 0 -5.77603141446392 LTS-015 chr6 116325143 146758542 30433400 * c(TRAPPC3L, LOC100130476, LINC00271, LOC100132735, LOC100287632, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, MIR5695, TRDN, CITED2, HBS1L, SMPDL3A, MTFR2, TMEM200A, NUS1, IL22RA2, SLC18B1, COL10A1, ADAT2, CLVS2, TAAR1, NCOA7, HINT3, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, OLIG3, TXLNB, EPB41L2, EYA4, FABP7, NT5DC1, FAM26D, NA NA NA NA NA NA NA NA NA LTS-015 ZUFSP, FAM162B, TBC1D32, GPRC6A, RFX6, SLC35F1, TSPYL4, HEY2, HEBP2, BRD7P3, FRK, VGLL2, FUCA2, TMEM244, FAM26E, MCM9, SHPRH, ASF1A, CCDC28A, MOXD1, GJA1, PDE7B, LINC00326, PHACTR2-AS1, DCBLD1, LOC285762, GRM1, DSE, HIVEP2, TAAR6, HSF2, SLC35D3, RSPH4A, IFNGR1, ECT2L, C6orf58, ARG1, KPNA5, HMGA1P7, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, MAN1A1, MAP3K5, FAM26F, FLJ46906, MYB, NMBR, HDDC2, RWDD1, AIG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, PLN, IL20RA, AHI1, VNN3, PKIB, ECHDC1, HYMAI, GOPC, ADGRG6, ARFGEF3, NHSL1, SERINC1, PTPRK, ABRACL, PBOV1, SNORA33, TRMT11, ROS1, RPS12, PERP, LOC643623, CTAGE9, SGK1, LINC01625, ALDH8A1, MIR548B, TCF21, TNFAIP3, TPD52L1, TSPYL1, TPI1P3, UTRN, OR2A4, RNF217-AS1, EPM2A, FAM184A, RNF146, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, RSPO3, LTV1, REPS1, PEX3, STX11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.372140593127954 252 0.0577803114669761 0.893680342636969 14068 0.256526922852992 3 2 1 -6.7703615669961 LTS-015 NA NA NA NA LTS-015 chr6 146758543 146876002 117460 * c(RAB32, GRM1) NA 0 NA 0.96609524531627 33 0.119347825322001 3 NA NA -5.7872619753613 LTS-015 chr6 146876003 146876006 4 * RAB32 NA 0 NA 1.24 1 NA NA NA NA NA LTS-015 chr6 146876007 146920271 44265 * c(RAB32, ADGB) 0.438 1 NA 1.02464656189035 9 0.0895462326274968 4 4 0 -5.805777637123 LTS-015 chr6 146920272 148872352 1952081 * c(STXBP5, SASH1, SAMD5, KATNBL1P6, STXBP5-AS1, ADGB) 0.455606737696598 22 0.0252355140393686 1.18098779472155 718 0.259421505266819 4 2 2 -6.92677457578842 LTS-015 chr6 148872353 150140550 1268198 * c(UST-AS1, UST, KATNA1, GINM1, TAB2, SASH1, ZC3H12D, NUP43, SUMO4, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.45925057726806 30 0.0443085446210636 1.06323754074712 870 0.201702361768555 4 2 2 -6.93017031075935 LTS-015 chr6 150140551 153603594 3463044 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RGS17, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.463331429000664 94 0.0296799214128351 1.20165654453418 2883 0.568565281574459 4 2 2 -7.05169431730064 LTS-015 chr6 153603595 153603675 81 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-015 chr6 153603676 154428702 825027 * OPRM1 0.447394624930156 6 0.027374562401373 0.966545871016006 80 0.216899212433864 4 2 2 -7.05071766939693 LTS-015 chr6 154428703 154476528 47826 * c(IPCEF1, OPRM1) 0.341 1 NA 0.977111010168274 71 0.393957697736234 3 3 0 -5.76557632411618 LTS-015 chr6 154476529 155777067 1300539 * c(CNKSR3, SCAF8, IPCEF1, TIAM2, CLDN20, OPRM1, NOX3, TFB1M) 0.337014648111598 32 0.0774541487674503 0.868672764937104 737 0.182757222756361 3 2 1 -6.84117711075258 LTS-015 chr6 155777068 156267850 490783 * character(0) NA 0 NA 1.243 1 NA NA NA NA NA LTS-015 chr6 156267851 158365358 2097508 * c(MIR3692, MIR4466, SNX9, ARID1B, TMEM242, ZDHHC14) 0.466728454238592 8 0.0150327024469036 1.05726941399344 634 0.326296745164099 4 2 2 -8.13724984223127 LTS-015 chr6 158365359 163612058 5246700 * c(LOC100129518, C6orf99, AIRN, MIR3918, SYNJ2-IT1, EZR-AS1, TAGAP, PACRG, PNLDC1, OSTCP1, MRPL18, IGF2R, ACAT2, LPA, GTF2H5, MAS1, MAP3K4, PARK2, SNX9, PLG, AGPAT4, TULP4, TMEM181, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, LOC729603, EZR, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.354257096351593 66 0.0488164155202164 0.896604440013171 3393 1.02304425450529 3 2 1 -6.75909584981129 LTS-015 chr6 163612059 163612573 515 * PACRG NA 0 NA 1.458 1 NA NA NA NA NA LTS-015 chr6 163612574 166308095 2695522 * c(CAHM, PDE10A, PACRG, C6orf118, PACRG-AS1, DKFZp451B082, QKI) 0.453514469193836 13 0.0541440386661073 1.17349596204293 689 0.258680241421307 4 2 2 -6.77504250930423 LTS-015 chr6 166308096 168325787 2017692 * c(LOC100289495, MIR1913, MIR3939, RPS6KA2-IT1, FGFR1OP, SFT2D1, CCR6, LINC01558, GPR31, PRR18, TCP10L2, AFDN, LINC00602, MPC1, UNC93A, RPS6KA2, AFDN-AS1, T, TCP10, TTLL2, RNASET2, LINC00473) 0.365409349136388 63 0.0617040199072042 0.910466694784715 1454 0.413766237895027 3 2 1 -6.73372696043429 LTS-015 chr6 168325788 168343778 17991 * AFDN NA 0 NA 1.479 1 NA NA NA NA NA LTS-015 chr6 168343779 168482332 138554 * c(HGC6.3, KIF25, AFDN, FRMD1) 0.351439444928848 16 0.0597582630269656 1.53565516516904 359 0.333157232153399 6 4 2 -6.73604158533632 LTS-015 chr6 168482333 168694537 212205 * character(0) NA 0 NA 0.886 1 NA NA NA NA NA LTS-015 chr6 168694538 170891863 2197326 * c(MIR4644, LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.364027529605515 35 0.0550796977955008 0.866674239146179 1187 0.283096265313872 3 2 1 -6.75993584977614 LTS-015 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.835119720829071 21 0.208565657128237 3 NA NA -5.76455422912711 LTS-015 chr7 193047 227931 34885 * FAM20C 0.477 1 NA 0.935189562413982 37 0.18567700975606 3 3 0 -5.76517845455527 LTS-015 chr7 227932 5346498 5118567 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ZNF890P, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, NA NA NA NA NA NA NA NA NA LTS-015 TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.436656973621087 199 0.0607913617671065 1.00893922372114 4710 0.24545965946572 4 2 2 -7.46968484955365 LTS-015 NA NA NA NA LTS-015 chr7 5346499 5346637 139 * TNRC18 NA 0 NA 0.757 1 NA NA NA NA NA LTS-015 chr7 5346638 8263205 2916568 * c(LOC100131257, ANKRD61, RNF216-IT1, KDELR2, GLCCI1, DAGLB, CCZ1B, RSPH10B, EIF2AK1, ICA1, COL28A1, GRID2IP, ZNF815P, PMS2CL, CCZ1, PMS2, MIOS, RNF216, ZNF853, ZDHHC4, C1GALT1, RAC1, ACTB, RPA3, OCM, FSCN1, MIR589, RSPH10B2, UMAD1, ZNF12, C7orf26, AIMP2, FBXL18, USP42, TNRC18, FAM220A, CYTH3) 0.402024434791347 79 0.0995219570175075 0.939730179631523 2886 0.294974582621024 3 2 1 -6.8501343086076 LTS-015 chr7 8263206 8267182 3977 * ICA1 NA 0 NA 1.572 1 NA NA NA NA NA LTS-015 chr7 8267183 20796585 12529403 * c(MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, ARL4A, AGR2, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, THSD7A, FERD3L, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, ABCB5, MACC1, ITGB8, AGMO, MEOX2, NDUFA4, TMEM106B, ANKMY2, TWIST1, ISPD, SCIN, PHF14, HDAC9) 0.433148950035391 83 0.0427971110276461 1.03058098890665 3358 0.31508026089465 4 2 2 -7.51023755531623 LTS-015 chr7 20796586 20796631 46 * ABCB5 NA 0 NA 0.866 1 NA NA NA NA NA LTS-015 chr7 20796632 28676909 7880278 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, LOC100506178, HOTAIRM1, HOXA10-HOXA9, KLHL7-AS1, RNU6-16P, HOXA10-AS, GPNMB, IGF2BP3, NUPL2, HIBADH, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, EVX1, SP8, HOXA11-AS, JAZF1, RPL23P8, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ABCB5, FAM221A, IL6, MIR148A, LOC441204, MIR196B, NPY, MPP6, NA NA NA NA NA NA NA NA NA LTS-015 CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SP4, SNORD93, FAM126A, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, KIAA0087) 0.411178565798182 80 0.0581173395659836 0.928880973235268 4172 0.285871621540218 3 2 1 -7.1457611662967 LTS-015 NA NA NA NA LTS-015 chr7 28676910 28725635 48726 * CREB5 NA 0 NA 1.301 1 NA NA NA NA NA LTS-015 chr7 28725636 30876367 2150732 * c(MIR550B1, LOC100506497, INMT-FAM188B, MIR550A3, NOD1, INMT, CHN2, CRHR2, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, LOC401320, DPY19L2P3, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, CREB5, SCRN1, TRIL) 0.428508740934616 30 0.0373971539884626 1.01154658808885 1672 0.234427092024563 4 2 2 -7.15235015410847 LTS-015 chr7 30876368 32249094 1372727 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.464635111499111 12 0.0477528358669235 1.11686265717178 975 0.257437715218399 4 2 2 -6.87734815567468 LTS-015 chr7 32249095 51251989 19002895 * c(DDC-AS1, DPY19L1P1, LOC100130673, C7orf72, MIR1200, MIR3943, MIR550B2, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, AOAH-IT1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, FKBP9, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, BMPER, TMED4, HECW1, AVL9, NACAD, COBL, DPY19L1, KIAA0895, NUDCD3, LSM5, LINC00957, SUN3, KBTBD2, GCK, VPS41, BBS9, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, NA NA NA NA NA NA NA NA NA LTS-015 GRB10, DBNL, NPC1L1, AOAH, HUS1, FAM183BP, IGFBP1, IGFBP3, LINC00265, GPR141, INHBA, VWC2, NPSR1, LINC00997, LOC401324, RASA4CP, C7orf65, NPSR1-AS1, ZNRF2P1, RP9P, TARP, OGDH, NT5C3A, NME8, PDE1C, UBE2D4, PGAM2, POLD2, ANLN, DDX56, EPDR1, PPIA, DPY19L2P1, URGCP, COA1, PSMA2, YAE1D1, TBX20, PURB, MYL7, RALA, RP9, FIGNL1, MYO1G, SEPT7P2, HERPUD2, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SNORA5C, SNORA9, MIR550A2, UPP1, C7orf25, SUGCT, C7orf69, EEPD1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV, ELMO1, SEPT7) 0.434347078538778 225 0.0643629813869422 0.995635885419822 9885 0.341562120094133 3 2 1 -8.18840836689922 LTS-015 NA NA NA NA LTS-015 chr7 51251990 51258500 6511 * COBL NA 0 NA 1.158 1 NA NA NA NA NA LTS-015 chr7 51258501 57532512 6274012 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, HPVC1, SEPT14, ZNF713, FKBP9P1, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.439960230885909 40 0.0832830784364156 1.04105810553493 1566 0.23956867578295 4 2 2 -7.28663009302356 LTS-015 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.52592938718364 17 0.645955926378518 6 NA NA -5.76441495215611 LTS-015 chr7 62758725 63981188 1222464 * c(LINC01005, ZNF679, ZNF680, ZNF727, ZNF733P, YWHAEP1, ZNF736, ZNF735) 0.479 1 NA 1.02400124571932 201 0.215009022487996 4 4 0 -5.95969880638801 LTS-015 chr7 63981189 64639874 658686 * c(LOC100128885, ZNF273, ERV3-1, ZNF680, ZNF117, ZNF107, LOC641746, CCT6P3, ZNF138) 0.431975462036993 13 0.0582903871214562 0.981529385481947 400 0.233114112074152 4 2 2 -6.91960688829405 LTS-015 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.652 1 NA NA NA NA NA LTS-015 chr7 64643340 65160072 516733 * c(ZNF92, LOC441242, INTS4P2) 0.463114127192865 7 0.0294383941073396 0.616006373810697 103 0.151406160485912 2 1 1 -7.09659711755073 LTS-015 chr7 65160073 65619527 459455 * c(VKORC1L1, CRCP, GUSB, ASL, LOC441242, CCT6P1, INTS4P2, SNORA22) 0.42986812389582 12 0.0511814212267291 1.06972794615469 339 0.591875401924709 4 2 2 -6.76838119096042 LTS-015 chr7 65619528 65705291 85764 * c(CRCP, TPST1) NA 0 NA 1.27 1 NA NA NA NA NA LTS-015 chr7 65705292 71488825 5783534 * c(MIR3914-1, MIR3914-2, MIR4650-2, KCTD7, AUTS2, RABGEF1, LINC00174, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, WBSCR17, STAG3L4, GTF2IRD1P1, CALN1, TPST1) 0.428440833153983 25 0.0984341234870645 1.28537119077602 1076 0.3034036584034 5 3 2 -6.97999018079829 LTS-015 chr7 71488826 74197577 2708752 * c(MIR4284, MIR4650-1, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, TBL2, GTF2I, LIMK1, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, MLXIPL, LOC541473, NSUN5, RFC2, NCF1, NCF1B, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.401689285650137 47 0.132729643210792 1.18443004633888 2188 0.292940096213925 4 2 2 -6.80718316655479 LTS-015 chr7 74197578 74210515 12938 * c(NCF1, GTF2IRD2) NA 0 NA 0.83 1 NA NA NA NA NA LTS-015 chr7 74210516 75043946 833431 * c(GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.461 1 NA 0.927584973077885 142 0.378592125977763 3 3 0 -5.76703055561029 LTS-015 chr7 75043947 75043951 5 * character(0) NA 0 NA 0.594 1 NA NA NA NA NA LTS-015 chr7 75043952 75046114 2163 * c(POM121C, NSUN5P1) NA 0 NA 0.473019874057998 47 0.130010524017199 1 NA NA -5.7657230755323 LTS-015 chr7 75046115 75046258 144 * POM121C NA 0 NA 1.051 1 NA NA NA NA NA LTS-015 chr7 75046259 77762229 2715971 * c(POM121C, PMS2P9, LOC100133091, APTR, MIR4651, CCL26, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A, TMEM60, MAGI2) 0.428433993144069 56 0.0634034289703231 1.14067689478254 2092 0.258476320053851 4 2 2 -6.75954284632011 LTS-015 chr7 77762230 86507796 8745567 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.435178367288573 37 0.0836439346743552 1.27477888812435 2043 0.285700066541254 5 3 2 -7.23994523611671 LTS-015 chr7 86507797 100321138 13813342 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-015 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.449292249230934 194 0.0495711045066422 1.1753307521855 12051 0.250022462806874 4 2 2 -6.82939411843237 LTS-015 NA NA NA NA LTS-015 chr7 100321139 100321191 53 * EPO NA 0 NA 1.144 1 NA NA NA NA NA LTS-015 chr7 100321192 100345155 23964 * c(EPO, ZAN) NA 0 NA 0.758400563138612 38 0.220949637999264 2 NA NA -5.77024724033049 LTS-015 chr7 100345156 100345254 99 * ZAN NA 0 NA 1.417 1 NA NA NA NA NA LTS-015 chr7 100345255 100488658 143404 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.455262768698743 33 0.0317922350916259 1.28558439728888 660 2.44014881515023 4 2 2 -6.8413400633389 LTS-015 chr7 100488659 100549499 60841 * ACHE NA 0 NA 1.23925334859447 56 0.160599182446852 4 NA NA -5.77301247157581 LTS-015 chr7 100549500 100549516 17 * character(0) 0.235 1 NA 2.93 1 NA NA NA NA NA LTS-015 chr7 100549517 100550749 1233 * character(0) 0.348640658144596 35 0.100801052082011 2.15107988155331 60 0.666733168999464 6 4 2 -6.73336363133964 LTS-015 chr7 100550750 100551147 398 * character(0) 0.300602228156785 8 0.103538726364307 0.658169309205774 39 0.403988430306936 7 5 2 -6.73583363871297 LTS-015 chr7 100551148 100551183 36 * character(0) NA 0 NA 1.559 1 NA NA NA NA NA LTS-015 chr7 100551184 100552788 1605 * character(0) 0.349935859845583 57 0.05452034524022 2.20278946116445 89 0.716965127908872 6 4 2 -6.73326529249449 LTS-015 chr7 100552789 100552794 6 * character(0) NA 0 NA 1.331 1 NA NA NA NA NA LTS-015 chr7 100552795 100648332 95538 * MUC12 0.38267716356219 42 0.06857106320073 1.51632153920648 172 0.631751889794085 8 5 3 -6.74934305439201 LTS-015 chr7 100648333 100648376 44 * MUC12 NA 0 NA 1.181 1 NA NA NA NA NA LTS-015 chr7 100648377 101120405 472029 * c(MIR4653, MUC12, ZNHIT1, AP1S1, COL26A1, MUC17, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3) 0.421827926560771 21 0.141109042604512 1.24103748040394 974 0.275271884098119 4 2 2 -6.76834389617591 LTS-015 chr7 101120406 101196688 76283 * COL26A1 0.486 1 NA 1.199297968837 48 0.213692452126285 4 4 0 -5.76646123182855 LTS-015 chr7 101196689 101272567 75879 * c(COL26A1, MYL10) 0.468297719656511 4 0.0346542445692684 1.40236907613635 51 0.223232461270098 6 3 3 -7.08971090137728 LTS-015 chr7 101272568 101459197 186630 * c(CUX1, MYL10) NA 0 NA 0.849 1 NA NA NA NA NA LTS-015 chr7 101459198 143840031 42380834 * c(LOC100129148, RPL19P12, LOC100130705, EFCAB10, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, KMT2E-AS1, LINC01004, RASA4B, SMKR1, MOXD2P, LOC100289561, SPDYE2B, MIR4285, MTRNR2L6, MIR3666, TMEM178B, MIR4468, MIR4467, LOC100630923, MIR5090, RNA5SP244, C7orf55-LUC7L2, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, SH2B2, CFTR, DUS4L, ZNF277, CHRM2, TSGA13, CLCN1, OR9A4, CPA1, CPA2, OR9A2, C7orf34, TMEM139, OR2A14, OR6B1, NA NA NA NA NA NA NA NA NA LTS-015 OR2F2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, PRSS58, ASZ1, ASB15, CUX1, BMT2, PRSS3P2, LOC154761, CLEC2L, FMC1, FEZF1-AS1, IQUB, C7orf77, C7orf66, TMEM213, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, EPHA1, EPHB6, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLEC5A, MKRN1, POLR2J2, UBN2, POT1, TAS2R39, TAS2R40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TAS2R41, HYALP1, TES, OR2F1, SLC13A4, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, DENND2A, GPR22, WEE2-AS1, EPHA1-AS1, TCAF2, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TAS2R60, CTAGE6, TSPAN33, AGBL3, OR6V1, OR2A12, FAM71F2, STRA8, KLRG2, IFRD1, DPY19L2P2, LOC349160, IMPDH1, IRF5, GSTK1, KCND2, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, KEL, ARF5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 FEZF1, FAM180A, LAMB1, OR2A25, OR2A5, LEP, LINC00998, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, AKR1B15, CTAGE15, OR2A2, EIF3IP1, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRCAM, NRF1, WEE2, ORC5, ATP6V0A4, PNPLA8, PAX4, TAS2R3, TAS2R4, TAS2R16, CPA4, WNT16, ZC3HC1, LUC7L2, MRPS33, LSM8, SLC26A4, PIK3CG, PIP, PODXL, GPR85, POLR2J, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TAS2R5, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, CHCHD3, PPP1R3A, RBM28, TMEM140, TRPV6, AGK, PRKAR2B, METTL2B, KMT2E, BCAP29, TRPV5, ANKRD7, PRSS1, RELN, ZC3HAV1, PSMC2, AKR1B10, KIAA1147, TAS2R38, MIR490, STRIP2, PTN, KIAA1549, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, C7orf73, CCDC136, PARP12, CREB3L2, SLC13A1, SMO, SPAM1, BPGM, AKR1D1, BRAF, SRPK2, SSBP1, SYPL1, TBXAS1, MIR592, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, NA, UBE2H, WNT2, LUZP6, ZYX, C7orf49, GCC1, PRKRIP1, ST7, CBLL1, CPED1, TTC26, CALD1, ORAI2, KDM7A, CALU, CAPZA2, CASP2, ARMC10, IMMP2L, CTTNBP2, SLC37A3, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, MGAM, WASL, OR6W1P, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, MGAM2, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, CEP41, FAM131B, DOCK4, TCAF1) 0.384139637196504 415 0.0641032860213745 0.914709437061465 24892 0.226295310149948 3 2 1 -6.87753333581156 LTS-015 NA NA NA NA LTS-015 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.394 1 NA NA NA NA NA LTS-015 chr7 143883365 144070395 187031 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.239567674767565 4 0.0563382640840131 0.584297784336262 147 0.369516030913213 1 1 0 -7.02918095728874 LTS-015 chr7 144070396 144071800 1405 * ARHGEF5 NA 0 NA 0.817 1 NA NA NA NA NA LTS-015 chr7 144071801 156474648 12402848 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, NA NA NA NA NA NA NA NA NA LTS-015 CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.393058136981687 211 0.060000165876548 0.904170214862103 7989 0.241641149193004 3 2 1 -6.86705179162132 LTS-015 NA NA NA NA LTS-015 chr7 156474649 158937585 2462937 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.391780286521622 29 0.055590582007043 0.852716177320449 1594 0.538509429761091 3 2 1 -6.89123694455527 LTS-015 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.852 2 0 0 NA NA -Inf LTS-015 chr8 182757 182794 38 * ZNF596 0.443 1 NA 0.559 1 NA NA NA NA NA LTS-015 chr8 182795 39142479 38959685 * c(NAT2, RBPMS-AS1, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, SMIM18, MIR548O2, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, NRG1-IT3, LINC00681, SORBS3, NPM2, DLC1, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CLU, CLDN23, GOT1L1, NA NA NA NA NA NA NA NA NA LTS-015 VPS37A, NKX2-6, SGCZ, UNC5D, LETM2, ADRA1A, CTSB, ADRB3, LOC157273, SGK223, PEBP4, CDCA2, ESCO2, FBXO16, LINC00599, TDRP, ERICH1, TDH, C8orf48, KCNU1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, ZNF596, DEFT1P, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, PRSS55, C8orf74, HTRA4, ADAM32, LGI3, DMTN, EPHX2, CLN8, EXTL3, PTK2B, FDFT1, FGFR1, FGL1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, PSD3, LEPROTL1, SLC39A14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DEFB107A, DEFB109P1, DEFB130, NEIL2, LOC254896, ADGRA2, GATA4, FBXO25, FGF20, GFRA2, LSM1, ADAMDEC1, GNRH1, ANGPT2, FAM86B3P, XKR6, LOC286059, LOC286083, MICU3, LOC286114, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, CNOT7, PURG, NRG1, LOC340357, USP17L2, XKR5, FAM90A25P, LOC389641, NUGGC, C8orf86, USP17L8, LOC392196, USP17L7, USP17L1, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DEFA9P, DEFA10P, NEFM, NEFL, NKX3-1, MIR383, DEFB107B, PCM1, ZDHHC2, SLC25A37, SCARA3, PDGFRL, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, WHSC1L1, PINX1, PIWIL2, ELP3, PPP2CB, INTS10, PPP2R2A, CCDC25, BRF2, AGPAT5, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, TEX15, MTUS1, KIAA1456, CCAR2, PLEKHA2, DEFB135, DEFB136, DEFB134, ERICH1-AS1, LINC00589, MBOAT4, SH2D4A, BLK, PDLIM2, SFTPC, CSMD1, USP17L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 USP17L3, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STAR, STC1, TACC1, MIR596, MIR597, MIR598, DEFA11P, LOC728024, DEFA1B, ZNF705D, FAM90A2P, LOC729732, WRN, DUSP26, HMBOX1, MCPH1, PPP1R3B, FZD3, RNF122, NUDT18, TUSC3, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TM2D2, PLPP5, MAK16, FUT10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 FAM86B1, TNKS, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, ASH2L, MTMR7, LONRF1, MYOM2, CHMP7, DLGAP2, MFHAS1, RP1L1, BAG4, ENTPD4, ARHGEF10, PHYHIP, KBTBD11) 0.166683654278402 551 0.0574716207378271 0.669603431198453 21303 0.510875464959116 2 2 0 -6.99160368121009 LTS-015 NA NA NA NA LTS-015 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.007 1 NA NA NA NA NA LTS-015 chr8 39311551 39331043 19493 * ADAM3A 0.14360365508395 4 0.0271416039810964 1.21351354675773 28 0.316357466003722 9 8 1 -6.79971469893201 LTS-015 chr8 39331044 39331093 50 * ADAM3A 0.273 1 NA 1.30428409042458 3 0.475510602755957 5 5 0 -5.76441066125866 LTS-015 chr8 39331094 39349526 18433 * ADAM3A NA 0 NA 1.2905405092927 31 0.439035333038144 5 NA NA -5.76472628781071 LTS-015 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.902 1 NA NA NA NA NA LTS-015 chr8 39442068 42275058 2832991 * c(AP3M2, GPAT4, NKX6-3, IDO2, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, GINS4, ADAM18) 0.363945613722423 39 0.0522231018005769 0.879622664085083 2109 0.21247189804504 3 2 1 -6.75780792741407 LTS-015 chr8 42275059 43212050 936992 * c(MIR4469, CHRNB3, SMIM19, HGSNAT, FNTA, POTEA, THAP1, SLC20A2, RNF170, POMK, HOOK3, CHRNA6) NA 0 NA 0.894829400769179 831 0.28244354674723 3 NA NA -5.76492397235385 LTS-015 chr8 47752736 48504629 751894 * c(LOC100287846, SPIDR, LINC00293) 0.403 1 NA 0.858558550167818 160 0.173185244439327 3 3 0 -5.80165716718827 LTS-015 chr8 48504630 66444599 17939970 * c(MIR124-2HG, LOC100130298, SBF1P1, LINC00968, LINC01606, MIR4470, YTHDF3-AS1, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CLVS1, CYP7A1, SDR16C5, SPIDR, YTHDF3, LINC00588, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, MRPL15, FAM150A, LOC401463, LYN, MIR124-2, MCM4, MOS, ASPH, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, LINC00251, CHD7, PRKDC, RAB2A, RP1, RPS20, SDCBP, NA NA NA NA NA NA NA NA NA LTS-015 SOX17, UG0898H09, SNAI2, TCEA1, TTPA, UBE2V2, CA8, CHCHD7, EFCAB1, NSMAF, RGS20, GGH, FAM110B, CYP7B1, TGS1, ST18, TOX, RB1CC1) 0.343304597535506 96 0.0849187995789497 0.889318066191087 5600 0.209583214611962 3 2 1 -6.82254434113678 LTS-015 NA NA NA NA LTS-015 chr8 66444600 67972815 1528216 * c(TCF24, LINC00967, RRS1-AS1, C8orf44-SGK3, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, C8orf46, PTTG3P, LINC01299, PPP1R42, MYBL1, PDE7A, ARMC1, C8orf44, SNHG6, SNORD87, VCPIP1, TRIM55, DNAJC5B, MTFR1) 0.342261069525568 8 0.0561655715591983 0.836416130405054 1433 0.213300541420745 3 2 1 -6.93940933996263 LTS-015 chr8 67972816 67973598 783 * COPS5 NA 0 NA 1.137 1 NA NA NA NA NA LTS-015 chr8 67973599 73925983 5952385 * c(MSC-AS1, LINC01592, NCOA2, ARFGEF1, COPS5, C8orf34, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LACTB2, CPA6, PRDM14, TERF1, CSPP1, PREX2, SLCO5A1, TRPA1, MSC, KCNB2) 0.346170615193034 46 0.0399708166488362 0.922130848259845 2472 0.220149158557445 3 2 1 -6.88959683527766 LTS-015 chr8 73925984 75171697 1245714 * c(STAU2-AS1, C8orf89, RDH10, SBSPON, LY96, STAU2, TMEM70, UBE2W, JPH1, RPL7, TCEB1, TERF1) 0.356452691556695 12 0.0432906841402782 0.828027144502657 848 0.199783168750509 3 2 1 -6.8891150651312 LTS-015 chr8 75171698 100887978 25716281 * c(MIR875, C8orf88, LRRC69, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, POP1, WWP1, STMN2, SLC26A7, OSR2, FAM92A1, NDUFAF6, DCAF4L2, RALYL, C8orf37, VPS13B, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ERICH5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, NA NA NA NA NA NA NA NA NA LTS-015 SNORA72, TRIQK, DPY19L4, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, C8orf87, RBM12B, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, PEX2, RPL30, ZNF704, LINC01298, SDC2, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, MIR599, TPD52, OSGIN2, UQCRB, CA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, CHMP4C, TP53INP1, PTDSS1) 0.362908275227116 174 0.0665307253788847 0.898442724463619 9485 0.27185668299035 3 2 1 -6.73758539296986 LTS-015 NA NA NA NA LTS-015 chr8 100887979 100888047 69 * VPS13B NA 0 NA 0.801 1 NA NA NA NA NA LTS-015 chr8 100888048 104081606 3193559 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.340351787650959 28 0.100404176592653 0.826206878587309 1864 0.196720532516021 3 2 1 -7.13070424231407 LTS-015 chr8 104081607 120743646 16662040 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TAF2, TRHR, TRPS1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.336999059146381 92 0.0708380141413608 0.94331151180185 4601 1.83215085403017 3 2 1 -6.82748801503621 LTS-015 chr8 120743647 136246629 15502983 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, LRRC6, MTBP, NSMCE2, LINC01591, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, MIR30B, MIR30D, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, WDYHV1, NA NA NA NA NA NA NA NA NA LTS-015 GSDMC, ZFAT, PVT1, ZFAT-AS1, HAS2-AS1, DEPTOR, ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TAF2, TG, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.366282584725965 104 0.0671093423820518 0.876245698250449 5899 0.196217715529919 3 2 1 -6.93704025120768 LTS-015 NA NA NA NA LTS-015 chr8 136246630 136246634 5 * LINC01591 NA 0 NA 1.146 1 NA NA NA NA NA LTS-015 chr8 136246635 141294147 5047513 * c(KHDRBS3, COL22A1, LINC01591, FAM135B, KCNK9, TRAPPC9) 0.338070843243839 30 0.0662275769904274 0.983392779637462 829 0.237335799601457 3 2 1 -7.19867004443206 LTS-015 chr8 141294148 141297669 3522 * TRAPPC9 NA 0 NA 0.808 1 NA NA NA NA NA LTS-015 chr8 141297670 142218649 920980 * c(DENND3, AGO2, CHRAC1, SLC45A4, PTK2, TRAPPC9) 0.347185222961137 25 0.0560533079606666 0.842393403285484 810 0.199661884932887 3 2 1 -6.85441855644974 LTS-015 chr8 142218650 142218653 4 * SLC45A4 NA 0 NA 0.987 1 NA NA NA NA NA LTS-015 chr8 142218654 146115367 3896714 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, NA NA NA NA NA NA NA NA NA LTS-015 LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.364728962630949 215 0.0583674284602647 0.906982065219588 7109 0.27544342290271 3 2 1 -6.73380069805719 LTS-015 NA NA NA NA LTS-015 chr8 146115368 146280905 165538 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF16) NA 0 NA 0.855565586406681 315 0.142651755490266 3 NA NA -5.77830085172347 LTS-015 chr9 14732 213291 198560 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.282 1 NA 0.684628455475311 13 0.258157723604021 2 2 0 -5.76706065740639 LTS-015 chr9 213292 34725313 34512022 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, SNORD121B, RCL1, TOPORS, SIGMAR1, CDKN2A, CDKN2B, DMRT2, RRAGA, CCL27, PSIP1, INSL6, PTENP1, DCTN3, UHRF2, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf66, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FAM219A, KDM4C, MLANA, NA NA NA NA NA NA NA NA NA LTS-015 KANK1, DDX58, SLC24A2, DCAF12, GALT, FAM205A, B4GALT1, RANBP6, DNAI1, SPINK4, GLDC, TUSC1, LURAP1L, CD274, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, C9orf24, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.298641230764896 236 0.0599090782433536 1.07251559006 13085 0.253064520332241 4 3 1 -7.9230977339168 LTS-015 NA NA NA NA LTS-015 chr9 34725314 34726291 978 * FAM205A NA 0 NA 0.457711701639679 46 0.422346875319076 1 NA NA -5.76444164034086 LTS-015 chr9 34726292 40498470 5772179 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, FAM205A, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, POLR1E, SHB, HRCT1, NA, MSMP, TESK1, TLN1, TPM2, FAM166B, NA NA NA NA NA NA NA NA NA LTS-015 VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.304252903811671 86 0.0604438224896025 1.07754321951367 5024 0.327248755436804 4 3 1 -6.90064674562909 LTS-015 NA NA NA NA LTS-015 chr9 40498471 40498569 99 * c(ZNF658B, NA) NA 0 NA 0.801 1 NA NA NA NA NA LTS-015 chr9 40498570 43816026 3317457 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) 0.489 1 NA 0.572088775706819 38 0.0988118353494201 2 2 0 -8.33058141864605 LTS-015 chr9 43816027 43816599 573 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.179 1 NA NA NA NA NA LTS-015 chr9 43816600 43861081 44482 * c(LOC286297, LINC01189, CNTNAP3B) 0.137390909440791 2 0.243951839509359 1.21205337940977 31 0.357072773522986 3 3 0 -6.76931932474883 LTS-015 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.04913117507748 8 0.421862875487149 4 NA NA -5.77271167700379 LTS-015 chr9 65602571 66457127 854557 * LOC286297 0.404 1 NA 1.09656538306036 4 0.204031656040593 4 4 0 -5.78849402862083 LTS-015 chr9 66457128 69256448 2799321 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6) 0.321479786582818 25 0.0944649317648265 0.92419711399095 71 0.405593823545415 3 2 1 -6.86031571721388 LTS-015 chr9 69256449 70971798 1715350 * c(LOC100133920, FOXD4L3, PGM5-AS1, CBWD6, FOXD4L5, ANKRD20A4) 0.308 1 NA 0.703148555019676 12 0.382424561782511 2 2 0 -5.794184204509 LTS-015 chr9 70971799 71396239 424441 * c(FAM122A, TMEM252, PGM5, PGM5-AS1, PIP5K1B) 0.487 1 NA 0.653027881971886 132 0.166664989119478 2 2 0 -5.7651106653622 LTS-015 chr9 71396240 117085526 45689287 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, SEC61B, SLC35D2, NA NA NA NA NA NA NA NA NA LTS-015 AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, ZNF883, ZNF169, ECM2, ABCA1, LPAR1, S1PR3, AAED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, OR13D1, NA, MIR4290HG, PSAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ROR2, LOC494127, C9orf135-AS1, OMD, OGN, ORM1, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, NAA35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RORB, MIR455, SLC28A3, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.45312649894767 552 0.0473695106414981 0.659075908568082 26034 0.239050543453199 2 1 1 -6.76818610347186 LTS-015 NA NA NA NA LTS-015 chr9 117085527 117085561 35 * ORM1 NA 0 NA 0.166 1 NA NA NA NA NA LTS-015 chr9 117085562 117089956 4395 * ORM1 0.380796371111294 4 0.143997685166579 0.257356353873824 39 0.34806952475343 3 2 1 -6.77483598900661 LTS-015 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.493 1 NA NA NA NA NA LTS-015 chr9 117092173 123171654 6079482 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.451134784621609 20 0.0402365047660638 0.694210991821206 1701 0.173484513082099 2 1 1 -7.08197305170523 LTS-015 chr9 123171655 123173535 1881 * CDK5RAP2 NA 0 NA 0.544 1 NA NA NA NA NA LTS-015 chr9 123173536 140708768 17535233 * c(LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, LOC100288842, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR4478, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, NA NA NA NA NA NA NA NA NA LTS-015 ZER1, AGPAT2, CEL, CELP, POMT1, ZBTB6, NEK6, SDCCAG3, NOXA1, USP20, SLC27A4, CNTRL, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DBH-AS1, ASB6, SLC34A3, DAB2IP, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, OR1Q1, TTLL11, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, MEGF9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ABCA2, ENDOG, ENG, AK1, NAIF1, STOM, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, NELFB, NSMF, GPSM1, DKFZP434A062, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, LINC00094, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, GSN, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, OR1L6, OR5C1, OR1K1, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NDUFA8, NOTCH1, ODF2, PAEP, PDCL, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, RAB14, C9orf78, FBXW5, RC3H2, TBC1D13, TOR4A, EXD3, PTPA, STRBP, PPP6C, RABL6, CDK5RAP2, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, DOLPP1, PTGDS, PTGS1, KCNT1, ZBTB26, DENND1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, EHMT1-IT1, RNF224, DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TRAF1, TRAF2, TSC1, C5, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, C9orf16, MAPKAP1, EHMT1, PTGES2, BRD3, NUP214, LHX3, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, MRRF, RBM18, ARRDC1, DPH7, GTF3C5, GTF3C4, LHX2, TMEM203, MED27, PTGES, ENTPD2, RALGPS1, ADAMTSL2, PPP1R26, SEC16A) 0.444175794835537 522 0.0623680256116015 0.659204743607014 25706 0.287312081022182 2 1 1 -6.73407560971308 LTS-015 NA NA NA NA LTS-015 chr9 140708769 140777306 68538 * c(MIR602, CACNA1B, EHMT1) 0.472 1 NA 0.715825458102506 75 0.116216639890282 2 2 0 -5.78534939920517 LTS-015 chr9 140777307 141070283 292977 * c(TUBBP5, CACNA1B) 0.251781404077074 9 0.173739588017367 0.859449661534735 321 3.29485092111428 5 4 1 -6.74112117258503 LTS-015 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.788074723177247 6 1.06595584649021 3 NA NA -5.7644244516308 LTS-015 chr10 94832 94870 39 * TUBB8 0.294 1 NA 0.163 1 NA NA NA NA NA LTS-015 chr10 94871 17842888 17748018 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, TUBB8, IL2RA, NA NA NA NA NA NA NA NA NA LTS-015 IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.139442247687174 194 0.0593427368212779 0.638040278023274 8793 0.188456689552856 2 2 0 -7.03975022901462 LTS-015 NA NA NA NA LTS-015 chr10 17842889 17865063 22175 * c(MRC1, TMEM236) NA 0 NA 0.032 1 NA NA NA NA NA LTS-015 chr10 17865064 18060381 195318 * c(MRC1, NA, TMEM236) 0.166 1 NA 0.468858061900432 56 0.353286109265564 1 1 0 -5.77834693644989 LTS-015 chr10 18060382 18085892 25511 * c(MRC1, NA, TMEM236) NA 0 NA 0.078 1 NA NA NA NA NA LTS-015 chr10 18085893 18152622 66730 * c(MRC1, NA, TMEM236) NA 0 NA 0.125784451745594 79 0.220349660904424 0 NA NA -5.84198806897669 LTS-015 chr10 18152623 18155476 2854 * MRC1 NA 0 NA 0.743 1 NA NA NA NA NA LTS-015 chr10 18155477 19904895 1749419 * c(SLC39A12-AS1, SLC39A12, NSUN6, ARL5B, MRC1, CACNB2) 0.140883794159023 24 0.0264908720948901 0.681637247590372 687 0.210551448950768 2 2 0 -6.85981060106155 LTS-015 chr10 19904896 19981217 76322 * character(0) NA 0 NA 1.981 1 NA NA NA NA NA LTS-015 chr10 19981218 21120116 1138899 * c(MIR4675, NEBL, PLXDC2) 0.117638974051364 7 0.0175390720284469 4.24339688132707 307 1.07364044881498 19 17 2 -6.74785200837748 LTS-015 chr10 21120117 21250620 130504 * NEBL NA 0 NA 4.88486398805088 108 1.62582769047883 19 NA NA -5.76441872739261 LTS-015 chr10 21250621 22055376 804756 * c(NEBL-AS1, MIR1915, NEBL, C10orf113, SKIDA1, CASC10, DNAJC1, MLLT10) NA 0 NA 3.40333154580433 419 1.0455189919033 13 NA NA -5.76456638111985 LTS-015 chr10 22055377 22095020 39644 * DNAJC1 NA 0 NA 0.615 1 NA NA NA NA NA LTS-015 chr10 22095021 22825133 730113 * c(LOC100130992, LOC100499489, COMMD3-BMI1, COMMD3, EBLN1, PIP4K2A, DNAJC1, BMI1, SPAG6) 0.418 1 NA 0.83831748366905 325 0.189966742628396 3 3 0 -5.82976385258658 LTS-015 chr10 22825134 23303174 478041 * c(ARMC3, PIP4K2A) 0.40075158996242 8 0.0507937003968012 0.852642838044284 179 0.23156838491382 3 2 1 -7.04238621909103 LTS-015 chr10 23303175 23303252 78 * ARMC3 NA 0 NA 0.699 1 NA NA NA NA NA LTS-015 chr10 23303253 23606170 302918 * c(ARMC3, MSRB2, PTF1A, C10orf67) 0.169 1 NA 0.666656785850965 149 0.162290504286625 2 2 0 -5.76538943232567 LTS-015 chr10 23606171 23606333 163 * C10orf67 0.095 1 NA 0.755959954582033 3 0.100604837524511 2 2 0 -5.76459202992918 LTS-015 chr10 23606334 30629226 7022893 * c(ABI1, MIR938, GPR158-AS1, LINC00837, MIR5586, YME1L1, MPP7, ENKUR, OTUD1, WAC-AS1, ANKRD26, RAB18, PDSS1, C10orf67, GAD2, BAMBI, MKX, PTCHD3, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, KIAA1462, LINC00264, SVIL, MIR603, MIR604, LINC00202-2, THNSL1, LYZL1, MASTL, ACBD5) 0.122359922965377 81 0.0565223652882448 0.668751111296425 3500 0.37982334619427 2 2 0 -6.75062706200232 LTS-015 chr10 30629227 30918486 289260 * c(LYZL2, MAP3K8, MTPAP) 0.338 1 NA 0.610686499815014 125 0.117906517371644 2 2 0 -5.83525513824518 LTS-015 chr10 30918487 31001532 83046 * LYZL2 0.274181018513761 2 0.0947523086789974 0.677290755024268 53 0.268895736804078 4 3 1 -6.92954977108928 LTS-015 chr10 31001533 31133549 132017 * character(0) NA 0 NA 1.126 1 NA NA NA NA NA LTS-015 chr10 31133550 32143150 1009601 * c(ZNF438, ZEB1-AS1, ZEB1, ARHGAP12) 0.41055325072645 8 0.116296419303679 1.07146816941765 345 0.177569845887528 4 2 2 -6.86179309253774 LTS-015 chr10 32143151 32150312 7162 * ARHGAP12 NA 0 NA 1.547 1 NA NA NA NA NA LTS-015 chr10 32150313 32745267 594955 * c(NA, KIF5B, EPC1, ARHGAP12) 0.378791271374244 4 0.0152315462117278 1.51155853216309 276 0.336338513111188 8 5 3 -7.14016360600194 LTS-015 chr10 32745268 36810768 4065501 * c(LINC00838, CREM, GJD4, CCNY, NA, ITGB1, PARD3, CCDC7, FZD8, CUL2, NRP1) 0.397117555709957 6 0.0513864443863035 1.31247108507319 1172 0.348551639483956 5 3 2 -6.82754276612714 LTS-015 chr10 36810769 36810786 18 * character(0) 0.305 1 NA 0.87 1 NA NA NA NA NA LTS-015 chr10 36810787 38671982 1861196 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.330810529407041 40 0.0646347479381303 0.889431233836783 686 0.289390986636695 3 2 1 -6.89394579499406 LTS-015 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 0.791904883018907 9 0.0770883331711817 3 NA NA -5.8801778369256 LTS-015 chr10 42379869 51592690 9212822 * c(ZNF37BP, C10orf142, RSU1P2, TIMM23, MIR4294, MIR3156-1, FAM170B-AS1, LINC00840, MIR5100, NA, HNRNPA3P1, CHAT, C10orf10, C10orf71, ZNF488, AGAP4, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, GDF2, GDF10, C10orf53, LINC00841, HNRNPF, ANKRD30BP3, NA, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, MSMB, NA NA NA NA NA NA NA NA NA LTS-015 LRRC18, FXYD4, NPY4R, CSGALNACT2, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, RET, CXCL12, ZNF487, TMEM72, LINC00842, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, HNRNPA1P33, FRMPD2B, ZNF22, ZNF32, ZNF33B, OR13A1, NCOA4, ZNF239, SYT15, RASSF4, LINC00839, PARG, ZFAND4, GPRIN2, BMS1) 0.366036910437788 134 0.0960507115993584 0.910474972817299 4553 0.26918181774373 3 2 1 -6.73909187170766 LTS-015 NA NA NA NA LTS-015 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.082 1 NA NA NA NA NA LTS-015 chr10 51603249 51633060 29812 * c(TIMM23, NA, PARG) NA 0 NA 0.462480436531616 39 0.185443208384029 1 NA NA -5.77050194393933 LTS-015 chr10 51633061 51827843 194783 * c(NA, FAM21A, AGAP6, NA, PARG) NA 0 NA 0.95 1 NA NA NA NA NA LTS-015 chr10 51827844 63168572 11340729 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, FAM21A, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.350691412631339 57 0.0852217952519478 0.939997072053635 2889 0.243534823016109 3 2 1 -6.93288749414292 LTS-015 chr10 63168573 71124696 7956124 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.353274874022756 59 0.0504138744551573 0.854764130651194 3636 0.204058590335879 3 2 1 -7.08307670098826 LTS-015 chr10 71124697 71128277 3581 * HK1 NA 0 NA 0.916 1 NA NA NA NA NA LTS-015 chr10 71128278 82005435 10877158 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, EIF5AL1, USP54, FUT11, OIT3, EIF4EBP2, TMEM254-AS1, PLAC9, ZCCHC24, UNC5B, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, HK1, ANXA7, ANXA11, FAM149B1, DUPD1, KCNMA1, C10orf105, C10orf55, NA NA NA NA NA NA NA NA NA LTS-015 LINC00595, DNAJC9-AS1, LINC00857, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, NPFFR1, C10orf54, LOC642361, SFTPD, BEND3P3, SFTPA1, TACR2, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, CAMK2G, C10orf11, PLA2G12B, ZNF503, AIFM2, NDST2, MBL1P, SGPL1, MCU, DLG5, CHST3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SEC24C, SPOCK2) 0.344412374465553 190 0.0681409705578097 0.890600409291319 8388 0.207005122131079 3 2 1 -6.81108691248199 LTS-015 NA NA NA NA LTS-015 chr10 82005436 82009627 4192 * character(0) 0.406199185598511 3 0.0270739727413617 0.59024944057234 39 0.424408123226605 5 3 2 -6.74745369571657 LTS-015 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.072 1 NA NA NA NA NA LTS-015 chr10 82012432 117041041 35028610 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, FAS-AS1, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4679-1, MIR4483, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, SMNDC1, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, NA NA NA NA NA NA NA NA NA LTS-015 LDB3, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, CFL1P1, TRUB1, VTI1A, DYDC1, HECTD2, FGFBP3, ADRA2A, ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, LINC00858, DNTT, DUSP5, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, WAPL, PPRC1, RRP12, TBC1D12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DNMBP, FRAT2, IFIT5, CALHM1, DPCD, SEC31B, ATRNL1, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, GHITM, PDCD4, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, RBM20, PDCD4-AS1, FLJ37201, GRID1, BLNK, HABP2, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, VWA2, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, NHLRC2, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, GUCY2GP, ABLIM1, LIPA, LBX1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GOLGA7B, ARL3, MIR107, C10orf62, MAT1A, LINC00863, IFIT1B, MIR346, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, ACSL5, PGAM1, PITX3, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CCDC186, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, AS3MT, MIR146B, STAMBPL1, GPAM, FAM160B1, SEMA4G, ALDH18A1, ACTA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RBP4, RGR, AVPI1, HPSE2, SCD, MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, ZDHHC6, RPL13AP6, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, SHOC2, TRIM8, TSPAN14, KAZALD1, SFXN3, SLC25A28, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ELOVL3, MARVELD1, CASP7, PCGF6, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, AFAP1L2, PYROXD2, USMG5, ATAD1, ARHGAP19, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, SMC3, NEURL1, LGI1, NOLC1, CDHR1, BBIP1, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A, DCLRE1A) 0.358086198477044 436 0.0633852219354145 0.886985495291421 24684 0.215853203773019 3 2 1 -6.87174005081713 LTS-015 NA NA NA NA LTS-015 chr10 117041042 117045693 4652 * ATRNL1 NA 0 NA 1.233 1 NA NA NA NA NA LTS-015 chr10 117045694 119308575 2262882 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.380983472299422 29 0.0895090055188053 0.956884614665863 1476 0.237925739603827 3 2 1 -6.8344906932135 LTS-015 chr10 119308576 121679137 2370562 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.362975069773748 15 0.0468225627337119 0.848052007060552 1560 0.170645288757138 3 2 1 -6.91703937327505 LTS-015 chr10 121679138 121680378 1241 * SEC23IP NA 0 NA 1.007 1 NA NA NA NA NA LTS-015 chr10 121680379 126517989 4837611 * c(MIR3941, FAM24B-CUZD1, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, CPXM2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.361713342330051 67 0.055114309073748 0.920079921190196 2847 0.227269141010179 3 2 1 -6.75531985224663 LTS-015 chr10 126517990 126677436 159447 * c(CTBP2, FAM175B, ZRANB1) 0.134 1 NA 0.883635161528338 195 0.232019810674862 3 3 0 -5.76520332462012 LTS-015 chr10 126677437 127585210 907774 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS, FANK1) 0.276222014523015 29 0.11438861900397 0.915574936952108 641 0.27433992378822 3 2 1 -7.07162646333061 LTS-015 chr10 127585211 127585237 27 * FANK1 0.309 1 NA 1.80154229087619 3 0.38078515377222 7 7 0 -5.7644103180053 LTS-015 chr10 127585238 134693137 7107900 * c(MIR378C, MIR4297, LINC00601, FANK1-AS1, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2, FANK1) 0.371098029278921 104 0.0563890750227986 0.928777853116854 2784 0.251322552198507 3 2 1 -6.79650674569536 LTS-015 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.489 1 NA NA NA NA NA LTS-015 chr10 134694406 134756359 61954 * CFAP46 0.333153585672157 6 0.0459681048844377 0.50046341332288 171 0.394134241876033 3 2 1 -7.08071527601369 LTS-015 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.454 1 NA NA NA NA NA LTS-015 chr10 134884462 135438977 554516 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.356167112636993 39 0.118255458970182 0.918883596293987 1393 0.290637223075357 3 2 1 -6.73723077211577 LTS-015 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 1.2465698117591 9 0.553976082516204 4 NA NA -5.7648799645285 LTS-015 chr11 193025 193096 72 * SCGB1C1 0.416 1 NA 0.488 1 NA NA NA NA NA LTS-015 chr11 193097 606667 413571 * c(MIR210HG, IFITM3, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, SIRT3, LMNTD2, HRAS, ANO9, B4GALNT4, IFITM5, MIR210, BET1L, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, PGGHG, RASSF7, PTDSS2, IFITM1) 0.364363650612251 69 0.0586071857073754 0.877897656909814 1456 0.490085627979603 3 2 1 -6.73381977284451 LTS-015 chr11 606668 607018 351 * PHRF1 NA 0 NA 0.686 1 NA NA NA NA NA LTS-015 chr11 607019 763554 156536 * c(DEAF1, DRD4, TMEM80, IRF7, CDHR5, PHRF1, SCT, EPS8L2, TALDO1) 0.428819664953437 45 0.0870643440221082 0.654932906785525 610 0.146999276583063 2 1 1 -6.74616801494766 LTS-015 chr11 763555 763693 139 * TALDO1 NA 0 NA 0.877 1 NA NA NA NA NA LTS-015 chr11 763694 1011829 248136 * c(AP2A2, LOC171391, CRACR2B, PDDC1, CEND1, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, CHID1, TALDO1, TSPAN4, SLC25A22, CD151) 0.395271255844287 40 0.0460951913616449 0.900140680468709 892 0.197429039134573 3 2 1 -6.99032472388708 LTS-015 chr11 1011830 1013167 1338 * c(AP2A2, MUC6) 0.361 1 NA 1.00796472774846 17 0.0983578027049262 3 3 0 -5.76542274637262 LTS-015 chr11 1013168 2946497 1933330 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.336686305481619 180 0.0878679280561539 0.971302680370632 2977 0.328692836713755 3 2 1 -6.84964832935471 LTS-015 chr11 2946498 2950040 3543 * PHLDA2 NA 0 NA 0.303 1 NA NA NA NA NA LTS-015 chr11 2950041 3012311 62271 * c(NAP1L4, SNORA54, PHLDA2) 0.353 1 NA 0.751939042105777 132 0.16993862000999 2 2 0 -5.78696759569445 LTS-015 chr11 3012312 3012315 4 * NAP1L4 NA 0 NA 0.883 1 NA NA NA NA NA LTS-015 chr11 3012316 4968296 1955981 * c(LOC100506082, MIR4687, OR7E12P, OSBPL5, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, MRGPRG-AS1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NAP1L4, NUP98, TRIM68, CHRNA10, RRM1, TSSC2, TRIM21, STIM1, TRPC2, ZNF195, OR51G1, OR51G2, OR51E2, CARS) 0.357446844621052 37 0.0791030802010724 0.92016404970249 1959 0.198469216454752 3 2 1 -6.74886915119863 LTS-015 chr11 4968297 4976859 8563 * c(OR51A4, OR51A2) NA 0 NA 0.202562961000419 40 0.188444372190459 0 NA NA -5.76847884665135 LTS-015 chr11 4976860 5777005 800146 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.351703535911351 69 0.0719767563362328 0.968633025347089 1218 0.30924616962381 3 2 1 -6.77672320409502 LTS-015 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.595 1 NA NA NA NA NA LTS-015 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 1.46210487500597 47 0.464595656414583 5 NA NA -5.76448967701799 LTS-015 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.908 1 NA NA NA NA NA LTS-015 chr11 5817708 6173131 355424 * c(TRIM22, OR56A4, OR56A1, OR56B4, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM5) 0.397569195998537 10 0.0451028454386934 0.912442604448485 298 0.198908068180686 3 2 1 -7.04129042985898 LTS-015 chr11 6173132 6220376 47245 * OR52B2 0.396 1 NA 0.849067111091586 43 0.104898780511615 3 3 0 -5.77399108478446 LTS-015 chr11 6220377 18333011 12112635 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SAA2-SAA4, USH1C, MIR5691, MRVI1, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, HPS5, PRKCDBP, SAAL1, MRGPRX3, MRGPRX4, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, NA NA NA NA NA NA NA NA NA LTS-015 OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, LOC644656, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TPH1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.354360643733772 236 0.0569475138109321 0.898725982387363 11445 0.237831724218992 3 2 1 -6.75398446927748 LTS-015 NA NA NA NA LTS-015 chr11 18333012 18333409 398 * HPS5 NA 0 NA 0.77 1 NA NA NA NA NA LTS-015 chr11 18333410 18720388 386979 * c(SPTY2D1-AS1, HPS5, SPTY2D1, TMEM86A, LDHAL6A, GTF2H1, LDHA, LDHC, UEVLD, TSG101) 0.327411829231313 5 0.0185930094390338 0.81688796052725 597 0.189505472193605 3 2 1 -8.54781049755304 LTS-015 chr11 18720389 32410227 13689839 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, ELP4, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, DKFZp686K1684, NELL1, BDNF-AS, PAX6, ZDHHC13, LIN7C, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, NA NA NA NA NA NA NA NA NA LTS-015 CCDC34, SLC6A5) 0.358273697320658 89 0.0846871623977003 0.945226487498042 4567 0.221827696005384 3 2 1 -7.07358824747598 LTS-015 NA NA NA NA LTS-015 chr11 32410228 48146622 15736395 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, EIF3M, CELF1, CHRM4, C1QTNF4, PTPMT1, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, NA NA NA NA NA NA NA NA NA LTS-015 ACCSL, ARHGAP1, HNRNPKP3, FAM180B, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, MYBPC3, NDUFS3, CCDC73, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, PTPRJ, RAG1, RAG2, RAPSN, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, C11orf49, ZNF408, QSER1, AGBL2, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CREB3L1, SLC39A13, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.349703908013914 183 0.0634149974277141 0.884125290468765 9422 0.231572760201093 3 2 1 -6.83881983286876 LTS-015 NA NA NA NA LTS-015 chr11 48146623 48157869 11247 * PTPRJ 0.303 1 NA 0.959966090230106 53 0.427224550325213 3 3 0 -5.76455098491762 LTS-015 chr11 48157870 48346419 188550 * c(OR4X2, OR4B1, OR4S1, OR4X1, PTPRJ) 0.354860093428093 9 0.0485695377783236 0.959421461201965 195 1.58719842195722 6 4 2 -6.75051842908556 LTS-015 chr11 48346420 48346423 4 * character(0) 0.364 1 NA 1.978 1 NA NA NA NA NA LTS-015 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.335382273586627 114 0.0606869571583155 1.50975193056639 188 0.718329617762096 9 6 3 -6.75850817537828 LTS-015 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.82 1 NA NA NA NA NA LTS-015 chr11 48388749 51459390 3070642 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.346229330370178 16 0.0435778517904069 0.92674505946609 439 0.406814252136347 3 2 1 -6.84370494128186 LTS-015 chr11 51459391 51527703 68313 * OR4C46 NA 0 NA 0.914912987065377 35 0.165757989021253 3 NA NA -5.76468834029197 LTS-015 chr11 55035776 55606302 570527 * c(OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR5L2, OR5D13, OR5D16, TRIM51HP, TRIM48, OR4P4, OR4C15, OR4A16, OR4A15) 0.341 1 NA 0.958914613033543 291 0.138650517884819 3 3 0 -5.82916300819432 LTS-015 chr11 55606303 57095289 1488987 * c(OR5I1, OR8I2, APLNR, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, SSRP1, OR8J3, TRIM51, TNKS1BP1) 0.326315502300734 69 0.0822355976502063 0.998256899189438 1199 0.277772645052891 3 2 1 -6.97470270888673 LTS-015 chr11 57095290 62375773 5280484 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, PRG3, SCGB1D2, SCGB1D1, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, EEF1G, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, FTH1, EML3, ZDHHC5, TKFC, DKFZP434K028, TIMM10, GIF, PRPF19, SELENOH, NA NA NA NA NA NA NA NA NA LTS-015 LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, INCENP, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, SCGB1D4, MIR130A, SCGB2A1, SCGB2A2, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, PRG2, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, TUT1, SSRP1, STX3, MIR611, TCN1, SERPING1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, SYT7, CD5, MTA2, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN, FADS2) 0.362035958532182 163 0.0623379225443011 0.913898582024073 7845 0.201598946604546 3 2 1 -6.74616138036303 LTS-015 NA NA NA NA LTS-015 chr11 62375774 68821573 6445800 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, NA NA NA NA NA NA NA NA NA LTS-015 MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DNAJC4, ANKRD13D, TBX10, IGHMBP2, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, ROM1, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, METTL12, SF1, ZFPL1, LRFN4, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, TMEM134, MUS81, FOSL1, INTS5, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LGALS12, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.356695005531858 175 0.0701468607206732 0.884122708568413 15418 0.187040601084888 3 2 1 -6.7867581126188 LTS-015 NA NA NA NA LTS-015 chr11 68821574 68822145 572 * TPCN2 NA 0 NA 0.991 1 NA NA NA NA NA LTS-015 chr11 68822146 70790852 1968707 * c(MIR548K, MIR3664, SHANK2-AS1, CTTN, TPCN2, ORAOV1, SHANK2-AS3, FGF3, FGF4, SHANK2, MYEOV, ANO1, CCND1, PPFIA1, FADD, FGF19) 0.372248876597318 28 0.0391958182630771 0.942254102407973 1382 0.214961764774928 3 2 1 -6.80393896674112 LTS-015 chr11 70790853 71139472 348620 * c(SHANK2, FLJ42102) 0.127 1 NA 0.979601322770045 59 0.18710439582926 3 3 0 -5.80429328892578 LTS-015 chr11 71139473 71139478 6 * character(0) NA 0 NA 0.701 1 NA NA NA NA NA LTS-015 chr11 71139479 76262128 5122650 * c(KCNE3, LOC100129216, LOC100133315, MIR3165, TPBGL, MIR4696, MIR4692, IL18BP, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, XRRA1, DHCR7, LRTOMT, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, C2CD3, P4HA3, PGM2L1, KLHL35, LOC283214, ALG1L9P, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, NUMA1, P2RY2, P2RY6, COA4, PDE2A, NA NA NA NA NA NA NA NA NA LTS-015 PPME1, MRPL48, LAMTOR1, NADSYN1, FAM86C1, RNF121, THAP12, EMSY, KRTAP5-8, PLEKHB1, RAB6A, SNORD15A, RPS3, UCP2, UCP3, UVRAG, WNT11, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, SERPINH1, ATG16L2, SPCS2, ARHGEF17, FCHSD2) 0.127235056961967 97 0.0499682545270605 0.657301453818852 5952 0.168051526278733 2 2 0 -6.73542352233345 LTS-015 NA NA NA NA LTS-015 chr11 76262129 76264097 1969 * EMSY NA 0 NA 0.624349694214714 41 0.142102702468252 2 NA NA -5.76457844655249 LTS-015 chr11 76264098 76368570 104473 * LRRC32 NA 0 NA 13.346 1 NA NA NA NA NA LTS-015 chr11 76368571 76369913 1343 * LRRC32 0.036 1 NA 13.1113952739086 31 4.1101605300518 20 20 0 -5.76445359223366 LTS-015 chr11 76369914 76895855 525942 * c(B3GNT6, TSKU, LRRC32, GUCY2EP, MYO7A, OMP, ACER3, CAPN5) 0.0350018409430421 18 0.00573146344336369 11.2659908909925 810 4.86971514485619 9 9 0 -6.79279422626809 LTS-015 chr11 76895856 76910766 14911 * MYO7A 0.034 1 NA 12.4078287134028 53 4.7026626409268 20 20 0 -5.76473756729883 LTS-015 chr11 76910767 77412502 501736 * c(CLNS1A, GDPD4, AQP11, MYO7A, PAK1, RSF1) 0.0325134498081563 19 0.00515150576976348 12.0266269985151 649 5.03636670322341 10 10 0 -6.76316234526399 LTS-015 chr11 77412503 77850681 438179 * c(NDUFC2-KCTD14, AAMDC, NDUFC2, RSF1, KCTD14, THRSP, ALG8, INTS4) 0.0407933992435631 7 0.00670465367878021 9.10872347826521 474 3.5461522053465 8 8 0 -6.77924326203916 LTS-015 chr11 77850682 77882249 31568 * c(KCTD21-AS1, ALG8) NA 0 NA 14.536 1 NA NA NA NA NA LTS-015 chr11 77882250 78128797 246548 * c(KCTD21-AS1, KCTD21, USP35, GAB2) 0.0349804062201963 22 0.00813947677993384 11.1186559668351 368 5.40811624742722 9 9 0 -6.75927552734772 LTS-015 chr11 78128798 78277277 148480 * c(NARS2, GAB2) 0.042 1 NA 9.20906424039185 65 2.51812407788707 20 20 0 -5.76949016756709 LTS-015 chr11 78277278 78380814 103537 * c(TENM4, NARS2) 0.048 2 0 10.671223171045 176 3.21505810518376 0 0 0 -Inf LTS-015 chr11 78380815 79133232 752418 * c(MIR708, MIR5579, TENM4) 0.0408332139697565 2 0.0127279220613579 13.0126938767162 221 3.72761203979858 8 8 0 -6.83879139594072 LTS-015 chr11 81601746 82684542 1082797 * c(MIR4300, DDIAS, FAM181B, PRCP) 0.113164217502098 5 0.0752416108280518 0.615092845163304 247 0.183989378781925 2 2 0 -6.85193010066187 LTS-015 chr11 82684543 82708491 23949 * RAB30 NA 0 NA 0.606923443676728 215 0.126805092536355 2 NA NA -5.77040674247276 LTS-015 chr11 82708492 82752568 44077 * c(SNORA70E, RAB30) NA 0 NA 1.144 1 NA NA NA NA NA LTS-015 chr11 82752569 82893611 141043 * c(SNORA70E, RAB30-AS1, RAB30, PCF11) 0.287 1 NA 1.55548337754759 139 0.419593503481529 6 6 0 -5.76556768929924 LTS-015 chr11 82893612 82997515 103904 * c(ANKRD42, PCF11, CCDC90B) 0.390035962357082 6 0.0540509019351204 1.50474800664135 323 0.429825972116379 8 5 3 -6.78043795398418 LTS-015 chr11 82997516 83166085 168570 * DLG2 NA 0 NA 1.015 1 NA NA NA NA NA LTS-015 chr11 83166086 87034541 3868456 * c(LOC100506368, ME3, PRSS23, DLG2, CCDC83, CCDC89, HIKESHI, SYTL2, TMEM126B, CREBZF, CCDC81, TMEM135, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.459406920073865 23 0.0303096665987612 1.12874459059139 1759 0.230775719881885 4 2 2 -6.94262071589584 LTS-015 chr11 87034542 87034696 155 * TMEM135 0.477 1 NA 0.732530480416778 3 0.0901628156910227 2 2 0 -5.76453818871476 LTS-015 chr11 87034697 87847063 812367 * c(RAB38, TMEM135) 0.152 1 NA 0.630011695977823 13 0.104287140589373 2 2 0 -5.8523493121426 LTS-015 chr11 87847064 91545547 3698484 * c(NAALAD2, MIR4490, GRM5-AS1, CTSC, TRIM64, FOLH1B, RAB38, CHORDC1, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.137668370846477 23 0.0486543020371207 0.653446914180473 1024 0.21929822222967 2 2 0 -6.75086105879817 LTS-015 chr11 92085231 92623877 538647 * FAT3 0.207287980307649 4 0.0198746069143518 2.84398889156149 316 0.455831377105645 11 9 2 -6.7936577445951 LTS-015 chr11 92623878 92881044 257167 * c(SLC36A4, FAT3, MTNR1B) 0.262 1 NA 2.69692066101965 187 0.638742390087519 10 10 0 -5.76482847990056 LTS-015 chr11 92881045 92913982 32938 * SLC36A4 NA 0 NA 2.58449431208887 38 0.49915419856018 10 NA NA -5.76441702501323 LTS-015 chr11 92913983 94225920 1311938 * c(MIR1304, GPR83, SLC36A4, DEUP1, PANX1, C11orf54, HEPHL1, VSTM5, IZUMO1R, MRE11A, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.365230131037161 19 0.0581679359435233 1.65568001654157 1257 0.362486570992718 6 4 2 -6.77223709409223 LTS-015 chr11 94225921 94232680 6760 * c(MRE11A, ANKRD49) NA 0 NA 1.55043686453657 62 0.276509357721319 6 NA NA -5.76455537060653 LTS-015 chr11 94232681 94261255 28575 * c(ANKRD49, C11orf97) 0.148 1 NA 0.582235344019753 9 0.226332044669871 2 2 0 -5.76950934076981 LTS-015 chr11 94261256 100999253 6737998 * c(MIR1260B, JRKL-AS1, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, ENDOD1, FUT4, KDM4E, CWC15, PGR, CNTN5, KDM4D, C11orf97, CCDC82, TMEM133, MAML2, JRKL, MTMR2, CEP57) 0.152349844691714 24 0.0469263221459441 0.667180961955001 2257 0.158432432303546 2 2 0 -6.89181248949286 LTS-015 chr11 100999254 101001260 2007 * c(LOC101054525, PGR) NA 0 NA 0.67197130079888 43 0.0936407096447296 2 NA NA -5.76446424076322 LTS-015 chr11 101001261 101322267 321007 * LOC101054525 NA 0 NA 2.204 1 NA NA NA NA NA LTS-015 chr11 101322268 101765654 443387 * c(MIR3920, ANGPTL5, TRPC6) 0.365 1 NA 1.72967626313674 143 0.421694733126251 6 6 0 -5.7692785847565 LTS-015 chr11 101765655 103909166 2143512 * c(WTAPP1, MIR4693, YAP1, TMEM123, ANGPTL5, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CEP126, MMP27, DYNC2H1, PDGFD, DCUN1D5, C11orf70, MMP20) 0.323520330834012 35 0.0537481991099518 1.63295352232905 1970 0.378383461681414 6 4 2 -6.88071629368966 LTS-015 chr11 103909167 104035130 125964 * c(DDI1, PDGFD) NA 0 NA 1.8841706392122 33 0.39998024098925 7 NA NA -5.76441612992927 LTS-015 chr11 104757419 104866461 109043 * c(CASP12, LOC643733, CASP4, CASP5) 0.124 1 NA 0.646343911523817 111 0.11357900626168 2 2 0 -5.76624619746655 LTS-015 chr11 104866462 109298127 4431666 * c(CARD16, KBTBD3, CWF19L2, KDELC2, C11orf65, DDX10, EXPH5, GRIA4, GUCY1A2, ACAT1, C11orf87, CARD17, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, CARD18, AASDHPPT, LOC643923, SLN, CUL5, CASP1, CASP5, MSANTD4, ALKBH8) 0.11911068029885 35 0.040254296706828 0.686783051894989 2679 0.193761843555015 2 2 0 -6.89719626726328 LTS-015 chr11 109298128 109299820 1693 * C11orf87 NA 0 NA 0.698170010394089 37 0.171281063467923 2 NA NA -5.76452694794788 LTS-015 chr11 109963856 109964007 152 * ZC3H12C 0.111 1 NA 0.408928690380821 3 0.318630402399604 1 1 0 -5.76441032973339 LTS-015 chr11 109964008 114401611 4437604 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, RBM7, COLCA2, PIH1D2, NXPE1, CRYAB, LAYN, DLAT, DRD2, FDX1, SIK2, ANKK1, REXO2, TIMM8B, HSPB2, HTR3A, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, NNMT, C11orf71, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, ZBTB16, ALG9, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ZW10, NA NA NA NA NA NA NA NA NA LTS-015 FDXACB1) 0.133439522827497 35 0.0362716640567452 0.648701673209021 3745 0.156641370846727 2 2 0 -6.76395767545283 LTS-015 NA NA NA NA LTS-015 chr11 114401612 114421747 20136 * NXPE1 0.484 1 NA 0.715705754423208 5 0.218541300444561 2 2 0 -5.76614832733851 LTS-015 chr11 114421748 114421967 220 * NXPE1 0.448702729176466 10 0.0341638210197084 0.777612249486233 14 0.180120838559886 2 1 1 -6.75864284004115 LTS-015 chr11 114421968 114441327 19360 * c(NXPE1, NXPE4) 0.083 1 NA 0.56136455646592 3 0.342404731275723 2 2 0 -5.76694504531534 LTS-015 chr11 114441328 119534298 5092971 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, NXPE2, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, RNF214, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, NXPE4, VPS11, TMPRSS4, IFT46, NA NA NA NA NA NA NA NA NA LTS-015 DSCAML1, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.12314846816265 141 0.0494099192630442 0.65052333678954 6802 0.240374044654268 2 2 0 -6.75296280230605 LTS-015 NA NA NA NA LTS-015 chr11 119534299 134856661 15322363 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, NA NA NA NA NA NA NA NA NA LTS-015 LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.132771201579438 272 0.0420344402746015 0.677282663942687 10471 0.344079131248175 2 2 0 -6.79471927022303 LTS-015 NA NA NA NA LTS-015 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.522 1 NA NA NA NA NA LTS-015 chr12 90923 90953 31 * LOC100288778 0.414 1 NA 1.036 1 NA NA NA NA NA LTS-015 chr12 90954 1599993 1509040 * c(LOC100288778, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, FAM138D, CCDC77) 0.424235500599844 17 0.0870862064447704 1.25749767278223 1523 0.270632753663064 4 2 2 -6.86115506997884 LTS-015 chr12 1599994 1599996 3 * ERC1 NA 0 NA 1.641 1 NA NA NA NA NA LTS-015 chr12 1599997 3409277 1809281 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, LOC283440, ITFG2, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CACNA2D4) 0.397709759095795 18 0.101520354377539 1.3504714194078 1863 0.9382492989838 5 3 2 -6.74078208757081 LTS-015 chr12 3409278 3490468 81191 * character(0) NA 0 NA 1.104 1 NA NA NA NA NA LTS-015 chr12 3490469 5155976 1665508 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, PRMT8, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.449560604643942 43 0.0410859105865559 1.15941823345767 1462 0.299713237705669 4 2 2 -6.75667347543815 LTS-015 chr12 5155977 5541293 385317 * NTF3 NA 0 NA 1.727 1 NA NA NA NA NA LTS-015 chr12 5541294 6427676 886383 * c(NTF3, PLEKHG6, ANO2, VWF, CD9) 0.41309244442831 22 0.0264321396912548 1.53099010771517 646 0.33477721813187 5 3 2 -6.79533742872417 LTS-015 chr12 6427677 7527124 1099448 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD27, CLSTN3, NA NA NA NA NA NA NA NA NA LTS-015 NCAPD2) 0.43468662952129 93 0.0407469643104153 1.40742417437111 3577 0.305471205284246 6 3 3 -6.90366219424405 LTS-015 NA NA NA NA LTS-015 chr12 7527125 7528471 1347 * CD163L1 0.455 1 NA 1.57864170977613 23 0.275836227689419 6 6 0 -5.7644226223698 LTS-015 chr12 7528472 9447348 1918877 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.410249367605799 71 0.0556982926021324 1.37678138713917 2252 0.382196740265697 5 3 2 -6.73436347850975 LTS-015 chr12 9447349 9447382 34 * LOC642846 NA 0 NA 1.297 1 NA NA NA NA NA LTS-015 chr12 9447383 9458336 10954 * LOC642846 0.389497237115085 2 0.0360624458405139 0.578069860068819 39 0.548998091238518 8 5 3 -6.78441239734558 LTS-015 chr12 9458337 9458708 372 * LOC642846 NA 0 NA 1.644 1 NA NA NA NA NA LTS-015 chr12 9458709 11138935 1680227 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R50, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, DDX12P, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, LOC642846, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.370743527452444 76 0.0841006279051179 1.52927705539047 2007 0.468355070829943 6 4 2 -6.78752837279848 LTS-015 chr12 11138936 11149390 10455 * c(PRH1-PRR4, TAS2R20, TAS2R50, PRB4) 0.194 1 NA 1.50010947671112 20 0.301589032852394 5 5 0 -5.76481098563442 LTS-015 chr12 11149391 11184020 34630 * c(PRH1-PRR4, TAS2R31, TAS2R19, TAS2R20, PRB4) 0.222621800239708 12 0.126636529508908 1.5127107995233 72 0.474723818069917 5 4 1 -6.74139345220237 LTS-015 chr12 11184021 11199547 15527 * c(PRH1-PRR4, PRB4) NA 0 NA 2.596 1 NA NA NA NA NA LTS-015 chr12 11199548 12982893 1783346 * c(SMIM10L1, PRH1-PRR4, CDKN1B, BORCS5, CREBL2, ETV6, TAS2R43, TAS2R46, TAS2R30, GPR19, LINC01252, TAS2R42, LRP6, LOH12CR2, DDX47, MANSC1, PRB1, PRB3, PRB4, PRB2, MIR613, BCL2L14, DUSP16, APOLD1) 0.21308711455212 28 0.0730423791605884 2.08465442686468 1129 0.615343994969836 9 7 2 -6.87247745605791 LTS-015 chr12 12982894 13028574 45681 * c(RPL13AP20, DDX47) NA 0 NA 0.878 1 NA NA NA NA NA LTS-015 chr12 13028575 13070752 42178 * c(RPL13AP20, MIR614, GPRC5A) 0.303173140586994 3 0.0115325625946708 0.993234192818147 127 0.242005631203714 7 5 2 -6.92238555926381 LTS-015 chr12 13070753 13101454 30702 * GPRC5D 0.421 1 NA 0.848812347341798 15 0.117106788872379 3 3 0 -5.76945883541876 LTS-015 chr12 13101455 21421730 8320276 * c(LOC100506314, LOC100506393, MIR3974, SLCO1B1, STRAP, HIST4H4, ERP27, AEBP2, C12orf60, EMP1, EPS8, SLCO1B3, LINC01559, GRIN2B, GUCY2C, SLCO1B7, ARHGDIB, ART4, MGP, MGST1, SMCO3, HEBP1, DERA, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, SLCO1A2, SKP1P2, SLC15A5, RERGL, PLBD1, GSG1, RERG, PLCZ1, HTR7P1, CAPZA3) 0.347717839567478 90 0.0706304797460951 0.939094655294713 3573 0.249849561921631 3 2 1 -6.89016275064485 LTS-015 chr12 21421731 28544408 7122678 * c(MIR920, MANSC4, MIR4302, RASSF8-AS1, ABCC9, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, GYS2, IAPP, SMCO2, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, GOLT1B, TM7SF3, CASC1, CCDC91, ETNK1, ASUN, CMAS, ARNTL2, PTHLH, KLHL42, BCAT1, RECQL, MRPS35, ST8SIA1, SLCO1A2, SOX5, C12orf71, BHLHE41, PYROXD1, SPX, SSPN, PPFIBP1, MED21, C2CD5) 0.372274778266093 90 0.0527268666991517 0.876513382601465 4181 0.227379530545025 3 2 1 -6.816046071423 LTS-015 chr12 28544409 28603023 58615 * CCDC91 NA 0 NA 1.223 1 NA NA NA NA NA LTS-015 chr12 28603024 28605426 2403 * CCDC91 0.333 1 NA 1.45358488165612 9 0.157640413600066 5 5 0 -5.76452621130952 LTS-015 chr12 28605427 28637115 31689 * CCDC91 0.367 1 NA 1.38012664645205 7 0.104501993601398 5 5 0 -5.76449836715886 LTS-015 chr12 28637116 34180172 5543057 * c(LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, OVCH1, SYT10, H3F3C, TSPAN11, YARS2, ERGIC2, PKP2, KIAA1551, CCDC91, FAR2, FAM60A, BICD1, CAPRIN2, FLJ13224, TMTC1, ALG10) 0.409782619808751 103 0.0479770096125334 1.35681394418441 2918 0.331047465372879 5 3 2 -6.75113665193833 LTS-015 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.39987697657438 13 0.339321419366691 5 NA NA -5.76441078902335 LTS-015 chr12 38710341 39071212 360872 * c(ALG10B, CPNE8) 0.383 1 NA 1.39102919065335 113 0.334405304787148 5 5 0 -5.76441122270501 LTS-015 chr12 39071213 55804740 16733528 * c(HOTAIR, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, YAF2, TUBA1B, RAPGEF3, MCRS1, ATF7, ADCY6, GALNT6, KRT71, LARP4, SLC2A13, DCD, MUCL1, LRRK2, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, CNTN1, COL2A1, ASB8, KRT72, PRICKLE1, BCDIN3D, CPNE8, KRT80, GRASP, KRT78, ANO6, ARID2, EIF4B, NA NA NA NA NA NA NA NA NA LTS-015 CELA1, ABCD2, COPZ1, FAIM2, DDN, TNS2, KCNH3, CBX5, ANP32D, SMUG1, OR6C74, OR6C3, LINC00935, PRPF40B, METTL7A, LETMD1, ZNF385A, AMHR2, RND1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, C12orf80, LINC00592, C12orf40, GXYLT1, TMPRSS12, KRT6C, RACGAP1, SENP1, PDZRN4, NCKAP1L, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 AMIGO2, IGFBP6, AQP2, AQP5, AQP6, ITGA5, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, LALBA, LINC00938, LOC400043, FIGNL2, OR6C65, MIR196A2, ASIC1, DBX2, FLJ12825, OR9K2, MIR148B, ATF1, NELL2, NFE2, SLC11A2, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, PPHLN1, HDAC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, KIF21A, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RARG, C12orf10, ATG101, RNY5, HIGD1C, SCN8A, GLYCAM1, SPATS2, SMARCD1, SP1, SNORA2A, SNORA2B, SNORA2C, TARBP2, MIR615, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, SOAT2, TUBA1C, SPRYD3, MFSD5, COX14, ZCRB1, CCDC65, NPFF, ENDOU, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, ESPL1, DAZAP2, TESPA1) 0.409222241110478 380 0.0681061982166296 1.35264470265624 19443 0.440955461594826 5 3 2 -6.77115511196634 LTS-015 NA NA NA NA LTS-015 chr12 55804741 55804846 106 * character(0) NA 0 NA 0.49 1 NA NA NA NA NA LTS-015 chr12 55804847 55805950 1104 * character(0) NA 0 NA 0.689302391095907 39 0.496089966700324 2 NA NA -5.76441565740597 LTS-015 chr12 55805951 55805956 6 * character(0) NA 0 NA 1.258 1 NA NA NA NA NA LTS-015 chr12 55805957 58216989 2411033 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, OR2AP1, OR10P1, SDR9C7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, OR6C2, OR6C4, INHBC, ITGA7, KIF5A, OR6C76, OR6C70, NA NA NA NA NA NA NA NA NA LTS-015 OR6C68, LRP1, MARS, METTL1, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.398438802805364 46 0.0941332312065792 1.3466444314763 7940 0.261986376071411 5 3 2 -6.76090531685751 LTS-015 NA NA NA NA LTS-015 chr12 58216990 58217027 38 * CTDSP2 0.215 1 NA 1.908 1 NA NA NA NA NA LTS-015 chr12 58217028 58220872 3845 * c(CTDSP2, MIR26A2) 0.205106089445468 13 0.0852910552318595 1.28075475168533 55 0.60747007408521 6 5 1 -6.73439758987992 LTS-015 chr12 58220873 59282702 1061830 * c(LOC100506844, CTDSP2, LRIG3, ATP23) 0.374 1 NA 1.39120977161781 195 0.255055852860202 5 5 0 -5.76441770902171 LTS-015 chr12 59282703 68549313 9266611 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, TMBIM4, AVPR1A, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, SLC16A7, HELB, USP15) 0.42100362900394 62 0.0402280779418007 1.37342503438587 4051 0.518387171709005 5 3 2 -6.79373044900317 LTS-015 chr12 68549314 68551685 2372 * IFNG NA 0 NA 1.157 1 NA NA NA NA NA LTS-015 chr12 68551686 69969152 1417467 * c(LOC100130075, MIR1279, SNORA70G, LOC100507250, FRS2, CPSF6, CPM, IFNG, LYZ, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B, YEATS4) 0.40232438787698 11 0.0440192106822795 1.24605876773739 1005 0.254966991560857 5 3 2 -6.89706385439207 LTS-015 chr12 69969153 75437335 5468183 * c(MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.411497119637594 75 0.0452869648926619 1.37760229072783 2764 0.307044680691424 5 3 2 -6.73850411592258 LTS-015 chr12 75437336 75437438 103 * KCNC2 NA 0 NA 1.118 1 NA NA NA NA NA LTS-015 chr12 75437439 77158099 1720661 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2) 0.392837185961098 14 0.0966092162236122 1.25384908336393 1106 0.303424743714803 5 3 2 -6.86552546121093 LTS-015 chr12 77158100 88591654 11433555 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, ZDHHC17, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.406517788131609 66 0.0680250262462588 1.41193037806056 3706 0.434182721199847 5 3 2 -6.7424364233575 LTS-015 chr12 88591655 109525275 20933621 * c(TMPO-AS1, USP30-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, ALDH1L2, SLC5A8, DAO, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, NA NA NA NA NA NA NA NA NA LTS-015 KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, SSH1, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, EEA1, USP30, GALNT4, CRADD, SOCS2, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.404604539037659 288 0.0630953432958823 1.32289467653775 13150 0.496060754522886 5 3 2 -6.85766788282136 LTS-015 NA NA NA NA LTS-015 chr12 109525276 110318235 792960 * c(MIR4497, ALKBH2, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, TRPV4, UNG, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B) 0.41900043298881 53 0.050548278378444 1.3937163036982 1611 0.555005979447543 5 3 2 -6.75899166424144 LTS-015 chr12 110318236 113274344 2956109 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.396661669357769 10 0.141139647158408 1.28051329179492 3931 0.275388695806775 5 3 2 -6.89061735373644 LTS-015 chr12 113274345 113275521 1177 * RPH3A NA 0 NA 1.416 1 NA NA NA NA NA LTS-015 chr12 113275522 120638512 7362991 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19) 0.39557082541783 101 0.0750290966661245 1.36937839530642 5230 0.315288549418978 5 3 2 -6.76059825862263 LTS-015 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 1.209 1 NA NA NA NA NA LTS-015 chr12 120638602 122186424 1547823 * c(PXN-AS1, NRAV, MIR4700, CAMKK2, SPPL3, COX6A1, TMEM120B, SIRT4, MORN3, GATC, HNF1A-AS1, ACADS, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, PXN, RPLP0, C12orf43, HNF1A, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, CABP1, MLEC, RNF10) 0.406614993678542 32 0.0824939330613802 1.30547713992149 2152 0.294599057279209 5 3 2 -6.77514057222291 LTS-015 chr12 122186425 122188205 1781 * TMEM120B NA 0 NA 2.014 1 NA NA NA NA NA LTS-015 chr12 122188206 122286993 98788 * c(TMEM120B, SETD1B, HPD, LINC01089, RHOF) 0.448214173703054 3 0.0759561276878524 1.52937055268383 411 0.275517784736755 6 3 3 -6.74091528377109 LTS-015 chr12 122286994 123875394 1588401 * c(MIR4304, CLIP1-AS1, LOC100507091, MPHOSPH9, WDR66, MLXIP, ABCB9, LRRC43, HCAR1, HPD, HCAR2, IL31, KMT5A, ARL6IP4, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, BCL7A, CLIP1, VPS33A, RSRC2, B3GNT4, OGFOD2, VPS37B, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, KNTC1) 0.40495479118943 49 0.0557998579716818 1.2775117456464 3101 0.289028974505374 5 3 2 -6.81555151343611 LTS-015 chr12 123875395 123892095 16701 * KMT5A 0.086 1 NA 1.37320657956128 27 0.297795274712386 5 5 0 -5.76442680234928 LTS-015 chr12 123892096 124102794 210699 * c(MIR3908, TMED2, SNRNP35, RILPL2, RILPL1, KMT5A, DDX55) 0.256054533317695 16 0.188617503164473 1.28614908555998 355 0.378989960065578 5 4 1 -6.74446034028681 LTS-015 chr12 124102795 124144395 41601 * c(EIF2B1, GTF2H3, DDX55) 0.421 1 NA 1.24431173199447 158 0.1931732100976 4 4 0 -5.76891432829368 LTS-015 chr12 124144396 124244828 100433 * c(ATP6V0A2, GTF2H3, TCTN2) 0.401521412758256 3 0.0508625599041181 1.27794623084743 302 0.295180690960545 5 3 2 -6.74907200123488 LTS-015 chr12 124244829 124244831 3 * ATP6V0A2 NA 0 NA 1.777 1 NA NA NA NA NA LTS-015 chr12 124244832 133425336 9180505 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, ATP6V0A2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, NA NA NA NA NA NA NA NA NA LTS-015 UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.414865859003798 126 0.0772546545574676 1.36202019467909 5472 0.321814682268558 5 3 2 -6.75903789554935 LTS-015 NA NA NA NA LTS-015 chr12 133425337 133428102 2766 * CHFR NA 0 NA 1.047 1 NA NA NA NA NA LTS-015 chr12 133428103 133812039 383937 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.42340966736891 16 0.0338609288118327 1.26559683796607 944 0.26254729099456 5 3 2 -6.87691420207193 LTS-015 chr12 133812040 133812708 669 * ANHX NA 0 NA 1.09923432236509 11 0.153236062691166 4 NA NA -5.76444006876969 LTS-015 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.115 1 NA 1.09295909549762 3 0.527769836197561 4 4 0 -5.76601490416115 LTS-015 chr13 19600476 25670676 6070201 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, PABPC3, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, TPTE2P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.139629151438663 84 0.0673374660746111 0.638508362591191 3379 0.18799785790748 2 2 0 -6.84407238189392 LTS-015 chr13 25670677 25670851 175 * PABPC3 0.24 1 NA 0.994969194318232 3 0.8216278557433 3 3 0 -5.76441160598308 LTS-015 chr13 25670852 25672895 2044 * PABPC3 0.272964790416568 12 0.0313682912663361 0.959608064367346 45 0.703547696759901 8 6 2 -6.73927002793938 LTS-015 chr13 25672896 25736362 63467 * character(0) 0.15 1 NA 0.58214855876638 32 0.162865061403011 2 2 0 -5.78627477515013 LTS-015 chr13 25736363 33351227 7614865 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, NA NA NA NA NA NA NA NA NA LTS-015 KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.128793881843951 81 0.0433275459098239 0.645025459281633 4901 0.281832129505657 2 2 0 -6.75893993738011 LTS-015 NA NA NA NA LTS-015 chr13 33351228 40364420 7013193 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.147504593444446 49 0.0772453518844668 0.682315102742123 2987 0.204772608182447 2 2 0 -6.88498487547721 LTS-015 chr13 40364421 52492525 12128105 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, NA NA NA NA NA NA NA NA NA LTS-015 LRCH1, SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.125746900670249 92 0.0369975464379347 0.628420620544345 6182 0.423858538313839 2 2 0 -6.82973660334024 LTS-015 NA NA NA NA LTS-015 chr13 52492526 52492560 35 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-015 chr13 52492561 114773106 62280546 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-015 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.125447643181352 239 0.0459826182529123 0.666837271365173 14188 0.303423786118863 2 2 0 -6.79860740236966 LTS-015 NA NA NA NA LTS-015 chr13 114773107 114774832 1726 * RASA3 NA 0 NA 0.531 1 NA NA NA NA NA LTS-015 chr13 114774833 115064542 289710 * c(RASA3, UPF3A, CDC16) 0.144692513090875 11 0.0260799470161202 0.579257635847077 225 0.159648741786361 2 2 0 -7.02800878593366 LTS-015 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.572753696592103 85 0.0696506629253331 2 NA NA -5.83208877629316 LTS-015 chr14 19434116 20248828 814713 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.387 1 NA 1.25138298082042 75 0.258317440022581 4 4 0 -5.82030452221117 LTS-015 chr14 20248829 20404649 155821 * c(OR4N2, OR4K2, OR4M1, OR4K5, OR4K1) 0.317291706899184 7 0.0926334301478272 1.2055352116893 121 0.224981258478716 4 3 1 -6.79975701210334 LTS-015 chr14 20404650 20404735 86 * OR4K1 0.285 1 NA 0.627 1 NA NA NA NA NA LTS-015 chr14 20404736 22471922 2067187 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-015 TEP1, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.360075478111959 102 0.0688044286938128 0.871602977021778 3543 0.260958499391855 3 2 1 -6.75745509381175 LTS-015 NA NA NA NA LTS-015 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.316 1 NA NA NA NA NA LTS-015 chr14 22475772 22990996 515225 * character(0) 0.330808631175047 25 0.0446277940301781 1.1051577045665 619 0.25606994420165 3 2 1 -7.24304333070018 LTS-015 chr14 22990997 36988820 13997824 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, PTCSC3, LINC00609, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, HECTD1, HEATR5A, NGDN, LRP10, TINF2, CIDEB, IGBP1P1, NA NA NA NA NA NA NA NA NA LTS-015 TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, MBIP, HAUS4, PPP2R3C, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, IL25, SRP54, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, AKAP6, KIAA0391, REC8) 0.362570569818959 148 0.066859143110471 0.862283334079305 10490 0.190899287710316 3 2 1 -7.177868928297 LTS-015 NA NA NA NA LTS-015 chr14 36988821 38724167 1735347 * c(SLC25A21-AS1, MIR4503, MIPOL1, CLEC14A, NKX2-8, FOXA1, PAX9, SSTR1, NKX2-1, SLC25A21) 0.327015307933027 26 0.0887426356641236 0.926703568194789 821 0.250341749712447 3 2 1 -6.84943342835229 LTS-015 chr14 38724168 78227532 39503365 * c(MED6, SNORD127, KTN1-AS1, LOC100288846, LOC100289511, MIR1260A, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4505, MIR4708, MIR4709, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, BATF, NPC2, AHSA1, EXOC5, CGRRF1, ACOT2, TMED10, FERMT2, C14orf1, WDHD1, MAP4K5, IFT43, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, NA NA NA NA NA NA NA NA NA LTS-015 FRMD6, SOCS4, NAA30, GPHB5, NOXRED1, JDP2, ISCA2, ACOT4, RPL10L, RDH12, ADAM21P1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, PTGR2, FAM161B, LRRC74A, ISM2, LRFN5, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, TMEM30B, MDGA2, SAMD15, DLST, EIF2S1, LINC01599, ERH, ESR2, ESRRB, NID2, VASH1, ATG14, FKBP3, ZBTB1, SNW1, PCNX1, DAAM1, SAMD4A, TTLL5, FAM179B, SYNE2, ANGEL1, FNTB, ZFYVE26, TTC9, FOS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 KLHDC2, FUT8, FBXO33, PLEKHG3, SIPA1L1, DCAF4, GCH1, PLEK2, TIMM9, MLH3, ATP5S, KCNH5, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, PROX2, ZDHHC22, TMED8, C14orf178, GPX2, GSTZ1, POMT2, ERO1A, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, VSX2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, HEATR4, FLJ22447, PLEKHD1, LTBP2, MAX, MGAT2, MIA2, MAP3K9, ALDH6A1, MNAT1, LINC00238, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TEX21P, MTHFD1, SIX6, OTX2, COQ6, ATL1, FCF1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, C14orf166, SIX4, PGF, PIGH, ZFYVE1, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, EXD2, VRTN, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, FLVCR2, GPATCH2L, AP5M1, PRKCH, ACTR10, YLPM1, PSEN1, PSMA3, CCDC177, PSMC6, TMEM63C, PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TRMT5, FANCM, ZNF410, NGB, ABCD4, PYGL, RBM25, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, VIPAS39, SMOC1, ACOT1, ACOT6, IRF2BPL, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SYNDIG1L, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, ZFP36L1, STYX, TGFB3, CCDC175, LINC01220, ZBTB25, VCPKMT, ZC2HC1C, L2HGDH, BBOF1, DDHD1, DPF3, SGPP1, TMX1, SLIRP, DNAL1, RPS6KL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SYT16, FSCB, GEMIN2, CIPC, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, ALKBH1, EIF2B2, PAPLN, NEMF, CHURC1, ELMSAN1, LIN52, NEK9, PNMA1, MAPK1IP1L, AKAP5, SPTLC2, ENTPD5, RGS6, ACYP1, SUSD6, KIAA0586, DLGAP5, AREL1) 0.354030623382585 517 0.0619889218333415 0.844449686933149 26403 0.290453455852967 3 2 1 -7.78910487374586 LTS-015 NA NA NA NA LTS-015 chr14 78227533 78234649 7117 * C14orf178 NA 0 NA 2.338 1 NA NA NA NA NA LTS-015 chr14 78234650 88952169 10717520 * c(DIO2-AS1, LINC00911, PTPN21, CEP128, DIO2, FLRT2, GALC, C14orf178, LOC283585, LINC01146, GTF2A1, KCNK10, SPATA7, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.345991236392042 39 0.0749000954037976 0.897396688284823 2083 0.223056163480027 3 2 1 -6.77332668584294 LTS-015 chr14 88952170 94731855 5779686 * c(SNORA11B, FBLN5, PTPN21, FOXN3, CHGA, IFI27L1, TTC8, TC2N, SLC24A4, PRIMA1, TTC7B, EML5, LINC00521, TMEM251, FAM181A-AS1, FOXN3-AS2, ITPK1-AS1, COX8C, IFI27, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, ASB2, CPSF2, NRDE2, UBR7, PPP4R3A, BTBD7, TDP1, LGMN, KCNK13, PSMC1, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, IFI27L2, GON7, FAM181A, EFCAB11, RPS6KA5, NA NA NA NA NA NA NA NA NA LTS-015 TRIP11, GOLGA5) 0.346844624127452 93 0.0582689814013287 0.83210308822687 5300 0.197875430700142 3 2 1 -7.32093997382801 LTS-015 NA NA NA NA LTS-015 chr14 94731856 94732050 195 * PPP4R4 NA 0 NA 0.904 1 NA NA NA NA NA LTS-015 chr14 94732051 107283157 12551107 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, SYNE3, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, NA NA NA NA NA NA NA NA NA LTS-015 EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, SERPINA11, KIF26A, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, SERPINA9, HSP90AA1, LINC00226, LINC00221, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, SERPINA1, SERPINA4, CDCA4, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, SETD3, APOPT1, HHIPL1, SERPINA6, ADAM6, DLK1, CCNK, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2) 0.345815059105083 331 0.0725396203539987 0.864512596356676 12153 0.309241521204541 3 2 1 -6.91450077925114 LTS-015 NA NA NA NA LTS-015 chr15 20169987 20445987 276001 * character(0) 0.274 1 NA 0.482512753717602 23 0.254515908787814 1 1 0 -5.82189862152351 LTS-015 chr15 20445988 21936464 1490477 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, GOLGA6L6, GOLGA8CP) 0.148006684236339 11 0.119075835270867 0.479091395986857 117 0.277394332988373 1 1 0 -7.10424490935507 LTS-015 chr15 21936465 22318963 382499 * c(POTEB, NF1P2, LOC646214, CXADRP2, LOC727924) 0.469 1 NA 0.326085913018848 7 0.295232918541406 1 1 0 -5.91376682953157 LTS-015 chr15 22318964 22833560 514597 * c(GOLGA8DP, TUBGCP5, OR4N4, GOLGA6L1, OR4M2, OR4N3P, REREP3, LOC727924) 0.45017357536769 16 0.0628605599720524 0.48295200484506 154 0.260412763922882 2 1 1 -7.15358092133923 LTS-015 chr15 22833561 28508344 5674784 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-015 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.421579149283604 50 0.0957058439774112 0.683660755613722 2500 0.185741842146054 2 1 1 -6.89214412996696 LTS-015 NA NA NA NA LTS-015 chr15 28508345 28510799 2455 * HERC2 NA 0 NA 0.557 1 NA NA NA NA NA LTS-015 chr15 28510800 32450812 3940013 * c(LOC100288637, LOC100289656, CHRNA7, OTUD7A, FAN1, FAM189A1, DKFZP434L187, LOC283710, APBA2, HERC2P10, MIR211, TRPM1, HERC2P9, WHAMMP2, KLF13, MTMR10, NSMCE3, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, HERC2, CHRFAM7A, ARHGAP11B) 0.459308786111424 33 0.0360266893911285 0.637377779241681 1546 0.193298813548241 2 1 1 -6.94202986151687 LTS-015 chr15 32450813 32451764 952 * CHRNA7 NA 0 NA 0.074 1 NA NA NA NA NA LTS-015 chr15 32451765 32908453 456689 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) 0.425061463664918 2 0.00707106781186552 0.464368498431896 82 0.317122791359686 2 1 1 -9.27474966883373 LTS-015 chr15 32908454 34153416 1244963 * c(TMCO5B, GREM1, FMN1, RYR3, SCG5, ARHGAP11A) 0.44201540934301 50 0.0746633915705436 0.683522962927526 1297 0.159009421691276 2 1 1 -6.77300101905789 LTS-015 chr15 34153417 45059989 10906573 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR1282, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, MIR4510, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, PATL2, EPB42, BAHD1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, CCNDBP1, LPCAT4, PLA2G4F, NA NA NA NA NA NA NA NA NA LTS-015 LRRC57, NUTM1, HYPK, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, TUBGCP4, FAM98B, PLA2G4D, PDIA3, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MAP1A, MEIS2, MFAP1, GOLGA8B, EIF2AK4, CATSPER2P1, NDUFAF1, NUSAP1, EMC4, SPTBN5, CTDSPL2, PLCB2, DLL4, INO80, CKMT1A, PPP1R14D, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, B2M, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, RAD51, SERINC4, RYR3, C15orf62, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZNF106, C15orf56, PHGR1, EIF3J-AS1, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TP53BP1, ANP32AP1, PIN4P1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, WDR76, TMEM62, SPG11, ELL3, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, LCMT2, SLC12A6) 0.438627678581472 179 0.0939744465151465 0.64170869537219 13051 0.141244959927772 2 1 1 -6.95119537185963 LTS-015 NA NA NA NA LTS-015 chr15 45059990 45060004 15 * TRIM69 NA 0 NA 0.584 1 NA NA NA NA NA LTS-015 chr15 45060005 45139663 79659 * TRIM69 NA 0 NA 1.13582484531145 39 0.859990059729767 4 NA NA -5.76441552423007 LTS-015 chr15 45139664 45139668 5 * character(0) NA 0 NA 0.49 1 NA NA NA NA NA LTS-015 chr15 45139669 48787470 3647802 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.432591032413193 29 0.0940624334115929 0.672051827521276 2483 0.162166454869284 2 1 1 -6.7716040459133 LTS-015 chr15 48787471 52539825 3752355 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, NDUFAF4P1, MIR4716, MIR4713, MIR4712, GNB5, SLC27A2, LEO1, CYP19A1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, GALK2, SCG3, TMOD3, TMOD2, HDC, GLDN, USP50, TNFAIP8L3, SHC4, TRPM7, FLJ10038, MYO5C, MAPK6, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.433094631732164 95 0.0887191360777537 0.637562018516131 3871 0.232120995669404 2 1 1 -6.7829752658882 LTS-015 chr15 52539826 52570093 30268 * c(MIR1266, MYO5C) 0.45 1 NA 0.633854461110257 55 0.142471810667994 2 2 0 -5.76573887524469 LTS-015 chr15 52570094 67664610 15094517 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, DYX1C1-CCPG1, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, ARPP19, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DYX1C1, MGC15885, LCTL, ZNF609, DAPK2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, GTF2A2, ANXA2, ONECUT1, RBPMS2, ANKDD1A, AQP9, TEX9, C2CD4B, KBTBD13, UBAP1L, LIPC, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NA NA NA NA NA NA NA NA NA LTS-015 NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MNS1, MYO5C, MAP2K1, FAM214A, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CGNL1, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.447762186565218 306 0.0476403838318814 0.638364146767749 12121 0.18276290304907 2 1 1 -6.99981836157357 LTS-015 NA NA NA NA LTS-015 chr15 67664611 74611047 6946437 * c(NR2E3, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, C15orf61, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, LINC00593, MYO9A, NEO1, PKM, PML, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, MAP2K5, THAP10, PARP6, ISLR2, BBS4, CELF6, RPLP1, STRA6, IQCH, MIR629, NA NA NA NA NA NA NA NA NA LTS-015 MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, CD276, ANP32A, ADPGK, PIAS1, CALML4, STOML1, KIF23) 0.446844832528915 68 0.0664757839423219 0.670740623478682 5377 0.159121479227088 2 1 1 -6.78968627025782 LTS-015 NA NA NA NA LTS-015 chr15 74611048 86312681 11701634 * c(DNM1P35, NA, UBE2Q2P2, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, NA NA NA NA NA NA NA NA NA LTS-015 SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, IDH3A, TMC3, IL16, IREB2, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, NMB, SCAPER, HDGFRP3, PDE8A, BTBD1, TM6SF1, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, ADAMTSL3, CEMIP, ALPK3, PTPN9, ABHD17C, RASGRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, HOMER2, ZNF592, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ARNT2) 0.445911468945962 220 0.0592667111193748 0.644166505853952 10319 0.145083095578391 2 1 1 -6.89906145470246 LTS-015 NA NA NA NA LTS-015 chr15 86312682 86368970 56289 * c(MIR1276, KLHL25) NA 0 NA 0.652754186827391 15 0.0693034734235696 2 NA NA -5.76500019721846 LTS-015 chr15 86368971 86685115 316145 * character(0) NA 0 NA 1.912 1 NA NA NA NA NA LTS-015 chr15 86685116 86702241 17126 * AGBL1 0.283 1 NA 1.59226795378119 17 0.453494633212942 6 6 0 -5.76444314781087 LTS-015 chr15 86702242 89007972 2305731 * c(AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, AGBL1-AS1) 0.234350922906323 32 0.0367172610370724 1.46957871029946 652 0.466800492583873 5 4 1 -6.75572547093009 LTS-015 chr15 89007973 91358761 2350789 * c(MIR1179, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, ACAN, GABARAPL3, MIR9-3HG, MRPL46, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, GDPGP1, MIR7-2, MIR9-3, MFGE8, TTLL13P, NGRN, RHCG, PLIN1, POLG, DET1, FANCI, MESP1, WDR93, RLBP1, BLM, AEN, CRTC3, MRPS11, PEX11A, IQGAP1, TICRR) 0.238404356209153 82 0.040482063938895 1.33152654404589 3271 0.291022449638833 5 4 1 -6.76436265184029 LTS-015 chr15 91358762 91418703 59942 * FURIN NA 0 NA 1.586 1 NA NA NA NA NA LTS-015 chr15 91418704 102516492 11097789 * c(FAM138E, LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, VPS33B, OR4F4, SLCO3A1, FAM169B, IGF1R, HDDC3, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MAN2A2, MEF2A, LOC440311, PRKXP1, FURIN, PCSK6, LINS1, MCTP2, SELENOS, UNC45A, NA NA NA NA NA NA NA NA NA LTS-015 RGMA, NR2F2-AS1, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.218541022266132 147 0.0473266564700728 1.43086523742209 5383 0.687086404786306 5 4 1 -6.83458373425043 LTS-015 NA NA NA NA LTS-015 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.555 1 NA NA NA NA NA LTS-015 chr16 81704 81779 76 * character(0) 0.404 1 NA 1.163 1 NA NA NA NA NA LTS-015 chr16 81780 2653194 2571415 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-015 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.352887764682854 190 0.103209538048004 0.867941044190598 8191 0.279739212611458 3 2 1 -6.77043555228462 LTS-015 NA NA NA NA LTS-015 chr16 2653195 2728762 75568 * c(ERVK13-1, FLJ42627, LOC652276) 0.396 1 NA 0.320804457270743 41 0.186827313640033 1 1 0 -5.84932376696626 LTS-015 chr16 2728763 2732840 4078 * KCTD5 0.391 1 NA 0.652705994288628 40 0.355917333206635 2 2 0 -5.76441178148442 LTS-015 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.798 1 NA NA NA NA NA LTS-015 chr16 2747831 14968958 12221128 * c(MIR365A, LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, LINC00514, LINC00921, TMEM114, NA NA NA NA NA NA NA NA NA LTS-015 DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, PRSS22, NPIPA3, MMP25, C16orf90, TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, LITAF, SEC14L5) 0.370367436398933 211 0.0666134159929553 0.863745652272819 8473 0.218601826039738 3 2 1 -7.01976041577408 LTS-015 NA NA NA NA LTS-015 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.06 1 NA NA NA NA NA LTS-015 chr16 15068593 15126916 58324 * PDXDC1 0.426889150594235 2 0.00989949493661171 1.15732121029737 119 0.22106361831892 7 4 3 -6.90359450115193 LTS-015 chr16 15126917 15127054 138 * PDXDC1 NA 0 NA 0.69 1 NA NA NA NA NA LTS-015 chr16 15127055 28608392 13481338 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-015 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.37177065991099 203 0.071808772308959 0.864741776388967 9697 0.216755928114741 3 2 1 -7.03839146594243 LTS-015 NA NA NA NA LTS-015 chr16 28608393 28734890 126498 * SULT1A1 NA 0 NA 0.558988530751472 87 0.337867766895537 2 NA NA -5.78228991179514 LTS-015 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.376 1 NA NA NA NA NA LTS-015 chr16 28834304 29367277 532974 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.388622878997742 23 0.0487024522355388 0.916543504919836 859 0.185092172833982 3 2 1 -6.87978701564934 LTS-015 chr16 29367278 29624350 257073 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.407909813375735 39 0.342948786913358 1 NA NA -5.76480170376875 LTS-015 chr16 29624351 29624403 53 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.932 1 NA NA NA NA NA LTS-015 chr16 29624404 31987905 2363502 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, NA NA NA NA NA NA NA NA NA LTS-015 CDIPT-AS1, YBX3P1, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MVP) 0.392664505447947 32 0.116706375250856 0.896398188033318 5723 0.187719634693982 3 2 1 -6.76979996027025 LTS-015 NA NA NA NA LTS-015 chr16 31987906 31993291 5386 * character(0) NA 0 NA 1.259 1 NA NA NA NA NA LTS-015 chr16 31993292 33962279 1968988 * c(SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.329019459354573 68 0.101423728030232 1.21181717422915 285 0.427396076869396 4 3 1 -6.85257443690049 LTS-015 chr16 33962280 34256808 294529 * LINC00273 0.344656191547721 13 0.0885057581786023 0.622816336471226 41 0.215373235309787 3 2 1 -7.24590847657233 LTS-015 chr16 34256809 34256827 19 * character(0) NA 0 NA 0.998 1 NA NA NA NA NA LTS-015 chr16 34256828 34257079 252 * character(0) 0 1 NA 1.26658973301709 7 1.01033061538338 5 5 0 -5.76441140976333 LTS-015 chr16 34257080 34682380 425301 * c(LINC01566, UBE2MP1) NA 0 NA 0.966254032760276 103 0.21706030826115 3 NA NA -5.78953637846441 LTS-015 chr16 46508169 46584429 76261 * ANKRD26P1 0.388 1 NA 0.883179091399104 69 0.244587225570329 3 3 0 -5.76476843167598 LTS-015 chr16 46584430 66438513 19854084 * c(CDH5, MIR3935, LINC00919, LOC100507577, CDH8, MIR548AE2, CDH11, IRX5, DNAJA2, KATNB1, CES1, CETP, NUDT21, ADCY7, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, CYLD, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, ARL2BP, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, GOT2, LOC283856, LINC00922, CCDC113, CFAP20, BRD7, MT1DP, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, CES1P2, MIR138-2, NA NA NA NA NA NA NA NA NA LTS-015 MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, PHKB, POLR2C, LPCAT2, HEATR3, SLC38A7, OGFOD1, DOK4, VPS35, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, FTO, IRX6, IRX3, USB1, SHCBP1, SETD6, FAM192A, CHD9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ITFG1, NETO2, LONP2, NLRC5, DRC7, CAPNS2, MT4, GPT2, ABCC11, NKD1, CBLN1, RSPRY1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.372366989927989 144 0.0630059347576505 0.872087135779501 9419 0.193068684128114 3 2 1 -7.09642879461446 LTS-015 NA NA NA NA LTS-015 chr16 66438514 66438612 99 * CDH5 NA 0 NA 0.815 1 NA NA NA NA NA LTS-015 chr16 66438613 70161298 3722686 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH16, NUTF2, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NA NA NA NA NA NA NA NA NA LTS-015 NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.357781297738993 49 0.0490567230339526 0.820895653891786 6852 0.169424961344122 3 2 1 -7.37234483211397 LTS-015 NA NA NA NA LTS-015 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.476 1 NA NA NA NA NA LTS-015 chr16 70162673 70219827 57155 * c(CLEC18C, PDPR) NA 0 NA 0.525629502395604 105 0.168881311683376 2 NA NA -5.82507669126626 LTS-015 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 1.106 1 NA NA NA NA NA LTS-015 chr16 70237374 70808234 570861 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.322601663705343 3 0.046306946923041 0.821367234948177 1127 0.184792759967868 3 2 1 -7.27420087243089 LTS-015 chr16 70808235 70883694 75460 * c(HYDIN, VAC14) 0.464 1 NA 0.882025989625155 113 0.205618511294837 3 3 0 -5.76497415318039 LTS-015 chr16 70883695 71167220 283526 * HYDIN 0.446644390193484 82 0.0670802886918701 0.929990602484669 545 0.350174173472865 4 2 2 -6.79639765137502 LTS-015 chr16 71167221 71481520 314300 * c(HYDIN, CMTR2, ZNF23, CALB2) 0.4 1 NA 0.846168889532276 213 0.176944047617444 3 3 0 -5.78932787756674 LTS-015 chr16 71481521 89724408 18242888 * c(LOC100129617, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, DPEP1, SNAI3-AS1, LINC00311, LDHD, MLKL, NA NA NA NA NA NA NA NA NA LTS-015 ZNF778, ACSF3, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BCO1, TERF2IP, NECAB2, KLHDC4, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, ZNF19, ZNF23, CA5A, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, ZNF469, ZNRF1, CNTNAP4, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, KCNG4, SDR42E1, BCAR1, KIAA0513, PIEZO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DHX38, IST1, ATP2C2) 0.354486974314152 393 0.0685751851517051 0.837131835368836 11548 0.365143673086042 3 2 1 -7.17716783958069 LTS-015 NA NA NA NA LTS-015 chr16 89724409 89724612 204 * SPATA33 NA 0 NA 0.54 1 NA NA NA NA NA LTS-015 chr16 89724613 90109711 385099 * c(VPS9D1-AS1, URAHP, TUBB3, SPATA2L, SPATA33, AFG3L1P, FANCA, TCF25, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.318949339921651 23 0.11358603154114 0.78301543945921 1185 0.192446874423631 3 2 1 -6.95097659139151 LTS-015 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.830298804788187 118 0.139136776294932 3 NA NA -5.77549469568589 LTS-015 chr17 6004 181479 175476 * c(LOC100506388, DOC2B, RPH3AL) 0.11 1 NA 0.696046717603555 101 0.171520221363645 2 2 0 -5.77523813453745 LTS-015 chr17 181480 20156835 19975356 * c(MIR744, LOC100128288, FAM106CP, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1288, MIR1253, MIR1180, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, EPN2-AS1, COX10-AS1, EPN2-IT1, TMEM220-AS1, LOC101559451, PEMT, CLEC10A, MYBBP1A, FBXW10, PRPF8, TRIM16, RAI1, KIF1C, NA NA NA NA NA NA NA NA NA LTS-015 GRAP, CHD3, AKAP10, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, CLDN7, CRK, SMCR5, SMCR8, NA, TOM1L2, DNAH2, RTN4RL1, SLC47A2, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, TRIM16L, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, USP32P1, DLG4, DNAH9, DPH1, DRG2, DVL2, EFNB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 EIF5A, DHRS7C, TVP23C, CENPV, FLCN, PLD6, SLC16A13, C17orf74, SPNS3, ENO3, ALDH3A1, USP32P2, ALDH3A2, FGF11, NLRP1, ARHGEF15, EPN2, FOXO3B, RAP1GAP2, CAMTA2, KDM6B, FLII, ZZEF1, MPRIP, CLUH, SMG6, WSCD1, CTDNEP1, TNFRSF13B, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TBC1D28, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, SNORD49A, PELP1, B9D1, GP1BA, LOC284009, VMO1, LOC284023, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 LINC00324, LINC00670, CDRT4, CCDC144B, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, KRT17P5, SMTNL2, TBC1D26, RFLNB, ITGAE, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, LRRC75A, OR3A4P, SLC25A35, LLGL1, C17orf97, MED11, KRT16P2, GRAPL, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, MEIS3P1, MFAP4, ASGR1, ASGR2, MNT, MIR324, ASPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, TVP23B, GLOD4, YBX2, MYO15A, TRPV2, ANKFY1, RASD1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, ALKBH5, TTC19, SLC52A1, MED9, WRAP53, MRM3, SLC47A1, VPS53, NCBP3, TSR1, MAPK7, PRPSAP2, DHX33, PSMB6, NT5M, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ADPRM, PLSCR3, ZNF286A, ZNF287, MIR497, ZNF624, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, CDRT15P2, FAM83G, EVPLL, TEKT3, SHBG, SHMT1, SLC2A4, SNORA48, SNORD10, OR1D4, LGALS9C, SOX15, SREBF1, SCARNA21, SNORA59A, VAMP2, SNORD49B, SNORD65, SNORD91A, SNORD91B, MIR33B, C1QBP, TOP3A, TP53, BHLHA9, TLCD2, LOC728392, KRT16P1, ZNF286B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 UBB, UBE2G1, TRPV1, YWHAE, ZNF18, RNF112, ZNF232, MIS12, GID4, METTL16, PHF23, FAM57A, FAM106A, CTC1, NDEL1, PITPNM3, DRC3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, GAS7, COPS3, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, ATPAF2, KCNAB3, AURKB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TMEM88, SPECC1, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, RPH3AL, FXR2, MPDU1, SPAG7, NCOR1, CD68, ULK2, CCDC144A, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.126247884088562 466 0.0641079217498577 0.68619767528648 25517 0.185567997981087 2 2 0 -7.26492858311359 LTS-015 NA NA NA NA LTS-015 chr17 20156836 20492893 336058 * c(CDRT15L2, LGALS9B, CCDC144CP, KRT16P3, SPECC1) 0.331 1 NA 0.740621149165393 215 0.273142267159637 2 2 0 -5.8012599268336 LTS-015 chr17 20492894 21318543 825650 * c(LOC100287072, USP22, NATD1, DHRS7B, CCDC144NL, KCNJ12, MAP2K3, TMEM11) 0.399293203285307 71 0.0778723068687603 0.708352963069614 490 0.158996777999476 2 1 1 -7.00694153884067 LTS-015 chr17 21318544 21318546 3 * KCNJ12 0.418 1 NA 2.885 1 NA NA NA NA NA LTS-015 chr17 21318547 21318663 117 * KCNJ12 0.378599460092203 7 0.0727297672732359 1.18925562425887 9 0.719555437598645 16 10 6 -6.73327873994577 LTS-015 chr17 21318664 21318698 35 * KCNJ12 0.278 1 NA 1.524 1 NA NA NA NA NA LTS-015 chr17 21318699 21320350 1652 * KCNJ12 0.292794033524048 40 0.0634977033705419 1.14304860744385 74 0.462786208310057 4 3 1 -6.73743427027767 LTS-015 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 0.741 1 NA NA NA NA NA LTS-015 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.311674537978391 10 0.0882158967785537 0.726539227499888 206 0.208801976588875 3 2 1 -7.38830179339969 LTS-015 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.556 1 NA NA NA NA NA LTS-015 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.152 1 NA 0.699615001834192 17 0.163601313276765 2 2 0 -5.76518506839828 LTS-015 chr17 25630389 27975421 2345033 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-015 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.123285179902788 67 0.0443950900019611 0.691210601047799 4193 0.170137706218741 2 2 0 -6.8571146152169 LTS-015 NA NA NA NA LTS-015 chr17 27975422 27977621 2200 * SSH2 NA 0 NA 0.576 1 NA NA NA NA NA LTS-015 chr17 27977622 34433730 6456109 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, NA NA NA NA NA NA NA NA NA LTS-015 RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, GOSR1) 0.121541684454816 93 0.0562521933497885 0.656200708605856 5982 0.191179089438784 2 2 0 -6.7482236993112 LTS-015 NA NA NA NA LTS-015 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.081 1 NA NA NA NA NA LTS-015 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.359516253578508 39 0.385464869984157 1 NA NA -5.77292754593876 LTS-015 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.651 1 NA NA NA NA NA LTS-015 chr17 34842415 36214044 1371630 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.115876528823152 11 0.0324544435954602 0.663412702130955 1523 0.152708332463249 2 2 0 -6.84655535550865 LTS-015 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.256 1 NA NA NA NA NA LTS-015 chr17 36214814 36462656 247843 * c(YWHAEP7, LOC440434, MRPL45) 0.287089494327941 2 0.267286363288515 0.530742591216241 99 0.158860948857622 1 1 0 -7.12407303702327 LTS-015 chr17 36462657 36474566 11910 * MRPL45 NA 0 NA 0.825 1 NA NA NA NA NA LTS-015 chr17 36474567 40465910 3991344 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, EIF1, P3H4, STARD3, NT5C3B, CCR7, ZPBP2, GJD3, KRT222, KRT40, CNP, CSF3, LINC00974, WIPF2, KRT25, TMEM99, KRT28, KRT24, ZNF385C, ERBB2, CASC3, IKZF3, KCNH4, GAST, KRT23, KAT2A, CISD3, GSDMA, KRT42P, NKIRAS2, GRB7, HCRT, SOCS7, KLHL10, MSL1, NA NA NA NA NA NA NA NA NA LTS-015 KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, MLLT6, GPR179, ACLY, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, MED1, CWC25, KLHL11, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, SNORA21, KRTAP4-11, SMARCE1, STAT3, STAT5A, STAT5B, THRA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, DHX58, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, GHDC, KRTAP4-4, TNS4, FBXL20, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, KRT38, KRT37, KRT36, HAP1, PGAP3, RPL23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.143149645928727 185 0.049296890685492 0.683135303677195 8773 0.19602574471786 2 2 0 -6.85647280578547 LTS-015 NA NA NA NA LTS-015 chr17 40465911 40466092 182 * STAT3 0.157 1 NA 0.789015926036984 5 0.0353128871660192 3 3 0 -5.76598251112428 LTS-015 chr17 40466093 41718063 1251971 * c(LINC00910, RAMP2-AS1, MIR2117, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, TMEM106A, CNTD1, RUNDC1, FAM134C, DHX8, ETV4, EZH1, G6PC, TUBG2, CCR10, PTRF, COA3, PSMC3IP, AOC2, HSD17B1, IFI35, ARL4D, LINC00671, NBR1, MEOX1, NAGLU, ATP6V0A1, RPL27, WNK4, BRCA1, STAT3, MLX, TUBG1, PLEKHH3, COASY, AARSD1, RND2, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.357441862611565 9 0.116523364371462 0.678702870505045 2487 0.161758085826376 2 1 1 -7.05646090887928 LTS-015 chr17 41718064 41987062 268999 * c(CD300LG, DUSP3, C17orf105, MEOX1, MPP2, MPP3, SOST) 0.119 1 NA 0.69768759901949 403 0.122370999248119 2 2 0 -5.79972497366337 LTS-015 chr17 41987063 43037345 1050283 * c(HDAC5, GJC1, C1QL1, RUNDC3A, LSM12, CCDC43, KIF18B, NAGS, GPATCH8, FAM215A, FZD2, GFAP, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, C17orf53, TMUB2, DBF4B, TMEM101, G6PC3, ASB16, EFTUD2) 0.127476105860919 41 0.0389761966133052 0.705808582928142 2181 0.217181866760903 2 2 0 -6.79848771116774 LTS-015 chr17 43037346 44172117 1134772 * c(MAP3K14-AS1, HEXIM1, C1QL1, PLCD3, SPATA32, HEXIM2, NMT1, FMNL1, ACBD4, DCAKD, MAP3K14) 0.0913536220732113 14 0.0300984647850614 0.88208067532237 1232 0.369368910732309 3 3 0 -6.7439982675459 LTS-015 chr17 44172118 44249392 77275 * character(0) 0.064 1 NA 0.645425311370427 27 0.0855507047131879 2 2 0 -5.76705876698969 LTS-015 chr17 44249393 44336993 87601 * character(0) NA 0 NA 0.640947973550869 23 0.342852305748864 2 NA NA -5.76474613510954 LTS-015 chr17 44336994 44337175 182 * character(0) NA 0 NA 0.463 1 NA NA NA NA NA LTS-015 chr17 44337176 44782233 445058 * character(0) NA 0 NA 0.367262586849311 65 0.191925481332249 1 NA NA -5.87084064445372 LTS-015 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.995 1 NA NA NA NA NA LTS-015 chr17 44788332 45214482 426151 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.407 1 NA 0.86927155025133 281 0.173567644812842 3 3 0 -5.77633254317254 LTS-015 chr17 45214483 45249372 34890 * CDC27 0.332552560024501 15 0.110465379191854 0.76536673620517 79 0.224869981547346 3 2 1 -6.79380361474951 LTS-015 chr17 45249373 45258954 9582 * CDC27 0.034 1 NA 0.82746307157991 7 0.285557850030928 3 3 0 -5.76494132910882 LTS-015 chr17 45258955 48067561 2808607 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, NA NA NA NA NA NA NA NA NA LTS-015 FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0953178187776685 68 0.0326502873535119 0.862744136523495 3786 0.215809707065884 3 3 0 -6.80568599649915 LTS-015 NA NA NA NA LTS-015 chr17 48067562 56635258 8567697 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, DLX3, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, LOC284080, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, NA NA NA NA NA NA NA NA NA LTS-015 MSX2P1, TEX14, CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.0906986260141765 142 0.0291869728248589 0.916332998356902 5469 0.262845780488601 3 3 0 -6.7626417419945 LTS-015 NA NA NA NA LTS-015 chr17 56635259 67521209 10885951 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, NA NA NA NA NA NA NA NA NA LTS-015 APOH, LRRC37A3, KPNA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, FAM20A, BCAS3, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.0972622575370185 114 0.0310136381897536 0.863614266989966 8076 0.204409975332498 3 3 0 -7.02538685067695 LTS-015 NA NA NA NA LTS-015 chr17 67521210 67522682 1473 * MAP2K6 NA 0 NA 1.559 1 NA NA NA NA NA LTS-015 chr17 67522683 71746551 4223869 * c(LINC00673, SLC39A11, CDC42EP4, LINC00469, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, SDK2, C17orf80, MAP2K6, CPSF4L, SOX9, SSTR2, FAM104A, COG1) 0.0955630911333901 28 0.0350188913491383 0.967066022578871 882 0.236341528769055 3 3 0 -6.94238183497366 LTS-015 chr17 71746552 80363378 8616827 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-015 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CYTH1, OTOP2, SLC9A3R1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.0943444370476506 401 0.0426475066731504 0.890189558480552 13568 0.329643462729666 3 3 0 -6.74210051959122 LTS-015 NA NA NA NA LTS-015 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.726 1 NA NA NA NA NA LTS-015 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.0888148014553242 3 0.02720906711619 1.82189223859211 39 0.6690590619221 14 13 1 -6.75506048784105 LTS-015 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.762 1 NA NA NA NA NA LTS-015 chr17 80391535 81009636 618102 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.107183811748122 11 0.0308815920456302 0.869298247793649 851 0.206268287165472 3 3 0 -6.83859736690524 LTS-015 chr17 81009637 81083625 73989 * c(B3GNTL1, METRNL) NA 0 NA 0.826858956116386 31 0.143023871982929 3 NA NA -5.78099415558223 LTS-015 chr18 116845 121139 4295 * ROCK1P1 0.055 1 NA 5.39298295519417 44 2.86347342561383 20 20 0 -5.76441152336761 LTS-015 chr18 121140 122129 990 * ROCK1P1 NA 0 NA 4.94302680177281 40 2.65066665828303 20 NA NA -5.76441017063266 LTS-015 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 9.641 1 NA NA NA NA NA LTS-015 chr18 122232 1278665 1156434 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, LINC00470, TYMS, YES1, COLEC12, USP14, THOC1) 0.0362303230783895 21 0.00674254438338412 10.1994416099543 759 4.13409650983564 9 9 0 -6.81852643627001 LTS-015 chr18 1278666 1359559 80894 * LINC00470 NA 0 NA 13.0669781633886 7 2.14499290708118 20 NA NA -5.77394490704972 LTS-015 chr18 2537498 2538545 1048 * METTL4 0.147 1 NA 4.79471330307605 21 1.236236485313 19 19 0 -5.76441013569844 LTS-015 chr18 2538546 2732420 193875 * c(NDC80, SMCHD1, CBX3P2, METTL4) 0.0976139642185807 6 0.0230651251893416 5.03649613437326 247 1.25056026819908 13 12 1 -6.74673268472608 LTS-015 chr18 2732421 2738421 6001 * SMCHD1 NA 0 NA 3.56 1 NA NA NA NA NA LTS-015 chr18 2738422 5238412 2499991 * c(DLGAP1-AS4, MYL12B, MYL12A, LINC00526, DLGAP1-AS3, SMCHD1, DLGAP1-AS5, LINC00667, AKAIN1, DLGAP1-AS1, TGIF1, LOC727896, EMILIN2, MYOM1, DLGAP1, LPIN2) 0.144665142738267 18 0.0260507925186485 3.90423302168261 990 1.26247713099174 16 14 2 -6.74790833844145 LTS-015 chr18 5238413 5238441 29 * LINC00667 NA 0 NA 2.394 1 NA NA NA NA NA LTS-015 chr18 5238442 5288978 50537 * LINC00667 NA 0 NA 0.729 1 NA NA NA NA NA LTS-015 chr18 5288979 5289887 909 * ZBTB14 0.462 1 NA 0.988775001719391 21 0.233755702757021 3 3 0 -5.76449323360432 LTS-015 chr18 5289888 7117782 1827895 * c(LINC01387, MIR4317, MIR3976, EPB41L3, LAMA1, LINC00668, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.443397110934178 37 0.0282736785880596 1.23607868813527 1035 0.300211447278609 4 2 2 -6.80382473797587 LTS-015 chr18 7117783 7232134 114352 * c(LAMA1, LRRC30) NA 0 NA 1.25626226488695 23 0.190833992381392 4 NA NA -5.78019337870286 LTS-015 chr18 7232135 7567789 335655 * PTPRM NA 0 NA 0.961 1 NA NA NA NA NA LTS-015 chr18 7567790 8343530 775741 * PTPRM 0.346 1 NA 0.951497810792288 131 0.172749501793595 3 3 0 -5.80768492379626 LTS-015 chr18 8343531 15004191 6660661 * c(LOC100192426, LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.364471994150853 87 0.0674571076608253 0.896089278503736 3430 0.420961035900325 3 2 1 -6.7341769616422 LTS-015 chr18 15004192 15006193 2002 * character(0) NA 0 NA 1.18853757035226 27 0.587181922138795 4 NA NA -5.76441470597224 LTS-015 chr18 18529727 18529837 111 * ROCK1 0.127 1 NA 2.24423067472583 5 0.657073816248981 9 9 0 -5.76441055432117 LTS-015 chr18 18529838 18530650 813 * ROCK1 0.091 1 NA 2.54380087132057 34 1.33048840864017 10 10 0 -5.76441030930409 LTS-015 chr18 18530651 18530654 4 * ROCK1 NA 0 NA 0.561 1 NA NA NA NA NA LTS-015 chr18 18530655 77659553 59128899 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, LOC100131655, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, MAPRE2, POLI, ESCO1, OSBPL1A, HAUS1, ALPK2, LOXHD1, NA NA NA NA NA NA NA NA NA LTS-015 INO80C, TTC39C, FAM69C, PSMA8, STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, DSG4, AQP4-AS1, ANKRD29, CYB5A, C18orf54, TCEB3C, DCC, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, ZNF521, TPGS2, SETBP1, KCNG2, CABYR, GATA6, SNORD58B, SNORD58A, SALL3, CDH20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, C18orf8, RAX, CXXC1, LOC339298, CPLX4, AQP4, CCDC178, ATP9B, OACYLP, LAMA3, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR1-2, MIR122, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, WBP11P1, MYO5B, NARS, NFATC1, NPC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, RBBP8, HRH4, BCL2, RIT2, ROCK1, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SNRPD1, SS18, SCARNA17, SNORA37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, ZNF236, CCDC102B, GREB1L, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, CNDP1, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, CABLES1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.34869154708988 435 0.0674256031517647 0.911316105611961 20217 0.31700129742342 3 2 1 -6.79869210118318 LTS-015 NA NA NA NA LTS-015 chr18 77659554 78005362 345809 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, HSBP1L1, RBFA, PQLC1, PARD6G) NA 0 NA 0.87179681005398 445 0.205310754470892 3 NA NA -5.77030249167862 LTS-015 chr19 107416 107456 41 * character(0) 0.396 1 NA 1.95 1 NA NA NA NA NA LTS-015 chr19 107457 1912986 1805530 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, LINC01002, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, AZU1, NA NA NA NA NA NA NA NA NA LTS-015 PTBP1, WDR18, REXO1, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, OR4F17, MADCAM1, ABHD17A, KLF16, KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.20202217876364 92 0.0751835467052093 0.440592375679676 3731 0.129137405427762 1 1 0 -6.95873435626839 LTS-015 NA NA NA NA LTS-015 chr19 1912987 1915092 2106 * c(SCAMP4, ADAT3) NA 0 NA 0.366244070511789 17 0.0401448663482349 1 NA NA -5.77663544728523 LTS-015 chr19 1915093 1917620 2528 * SCAMP4 NA 0 NA 0.901 1 NA NA NA NA NA LTS-015 chr19 1917621 1924653 7033 * SCAMP4 0.078 1 NA 0.898340641265098 29 0.558130339051245 3 3 0 -5.76441042412478 LTS-015 chr19 1924654 6694605 4769952 * c(LOC100128568, C19orf71, DPP9-AS1, MIR1227, CHAF1A, MIR4321, MIR3940, MIR4747, MIR4746, EBI3, PLIN3, HMG20B, TUBB4A, SEMA6B, IZUMO4, SCAMP4, ZNF554, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, CSNK1G2, TICAM1, ZNRF4, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, KDM4B, ZFR2, PIP5K1C, FUT3, FUT5, FUT6, CSNK1G2-AS1, TINCR, CATSPERD, RPL36, TIMM13, NA NA NA NA NA NA NA NA NA LTS-015 AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MKNK2, UHRF1, GTF2F1, SLC39A3, TMPRSS9, C19orf35, HSD11B1L, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, PLEKHJ1, FEM1A, STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, PSPN, NCLN, SPPL2B, DUS3L, SHD, PTPRS, ZNF77, CACTIN, RFX2, CELF5, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 TBXA2R, MIR637, THOP1, TLE2, C3, PLIN4, SLC25A23, FSD1, TLE6, DENND1C, ZNF556, UBXN6, ACSBG2, SF3A2, CLPP, CAPS, DOHH, ALKBH7, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, DPP9, CRB3, LONP1, APBA3, SAFB2, CD70) 0.107086365072529 167 0.0588063651884901 0.862093819798942 7368 0.341055472315592 3 3 0 -6.80984365691741 LTS-015 NA NA NA NA LTS-015 chr19 6694606 6696435 1830 * C3 NA 0 NA 0.308 1 NA NA NA NA NA LTS-015 chr19 6696436 6731543 35108 * c(GPR108, C3) 0.230038617376409 5 0.0325545695717207 0.440135193512695 125 0.104005025933148 1 1 0 -7.04137015454475 LTS-015 chr19 6731544 9968139 3236596 * c(LOC100128573, PET100, SH2D3A, RAB11B-AS1, TGFBR3L, ZNF559-ZNF177, MIR4999, CLEC4M, TIMM44, ZNF266, PNPLA6, EVI5L, OR7D4, OR7G1, OR1M1, MBD3L2, TRAPPC5, PCP2, ZNF358, ZNF560, ZNF558, ZNF846, OR7D2, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, KANK3, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, MBD3L5, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, ZNF699, LYPLA2P2, OR7G2, OR7G3, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, NA NA NA NA NA NA NA NA NA LTS-015 ANGPTL4, MARCH2, CD320, PIN1, ZNF562, FBXL12, MAP2K7, RETN, GPR108, XAB2, MCOLN1, CAMSAP3, ZNF317, UBL5, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF812P, VAV1, ZNF121, ZNF177, ZNF426, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, ZNF559, MBD3L1, RAB11B, PEX11G, ZNF561, OLFM2, TRIP10, MUC16) 0.106547085060094 190 0.0455673184071941 0.870613902781331 5610 0.329172409794559 3 3 0 -6.79502698223145 LTS-015 NA NA NA NA LTS-015 chr19 9968140 9971478 3339 * OLFM2 NA 0 NA 0.728318139970228 15 0.105976996605508 2 NA NA -5.76620630374716 LTS-015 chr19 9971479 10046967 75489 * OLFM2 NA 0 NA 2.239 1 NA NA NA NA NA LTS-015 chr19 10046968 10070500 23533 * c(COL5A3, OLFM2) 0.399 1 NA 2.18968894108087 7 0.957672078283485 8 8 0 -5.76442567495233 LTS-015 chr19 10070501 10149123 78623 * c(COL5A3, RDH8) 0.320099591266757 7 0.0394449586373818 2.35714006589608 326 1.48294201661234 13 9 4 -6.73824898860069 LTS-015 chr19 10149124 10157326 8203 * C3P1 NA 0 NA 3.978 1 NA NA NA NA NA LTS-015 chr19 10157327 11324965 1167639 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, RAVER1, ILF3-AS1, SPC24, DNM2, DNMT1, C19orf38, KANK2, ICAM1, ICAM3, ICAM4, ILF3, C3P1, LDLR, MIR199A1, P2RY11, MRPL4, PDE4A, S1PR5, C19orf66, PPAN, SLC44A2, DOCK6, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, KEAP1) 0.266655286276696 50 0.0475683997319778 2.70822451339887 2711 0.734618519260222 12 9 3 -6.75831011348324 LTS-015 chr19 11324966 11475391 150426 * c(CCDC159, TSPAN16, TMEM205, ANGPTL8, DOCK6, PLPPR2, RAB3D) NA 0 NA 2.58378254549606 373 0.523287909347303 10 NA NA -5.76444048479444 LTS-015 chr19 11475392 11485440 10049 * c(SWSAP1, PLPPR2) NA 0 NA 1.93 1 NA NA NA NA NA LTS-015 chr19 11485441 11526759 41319 * c(SWSAP1, EPOR, RGL3) 0.489 1 NA 1.59323794102364 123 0.28554989377795 6 6 0 -5.7646016214386 LTS-015 chr19 11526760 11567982 41223 * c(CCDC151, ELAVL3, PRKCSH, RGL3) 0.479 1 NA 1.63674432166363 171 0.284401422480703 6 6 0 -5.76441117467017 LTS-015 chr19 11567983 12741553 1173571 * c(ZNF625-ZNF20, ZNF443, ZNF653, ZNF441, ZNF491, ZNF440, CNN1, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ELAVL3, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ECSIT, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ELOF1, ZNF799, ZNF625, ZNF700, ZNF439) 0.370670637878261 31 0.041656841852429 2.04874639651868 1911 0.648953971905901 8 5 3 -6.79437980929026 LTS-015 chr19 12741554 12772263 30710 * MAN2B1 0.348588439413821 5 0.0395512325977333 2.66804542176868 105 0.45916892136952 9 6 3 -6.73876098169455 LTS-015 chr19 12772264 12863537 91274 * c(DHPS, SNORD41, TNPO2, MAN2B1, ASNA1, WDR83OS, BEST2, C19orf43, FBXW9, WDR83) NA 0 NA 2.70848419280858 373 0.481419374663467 10 NA NA -5.76474308768109 LTS-015 chr19 12863538 12864007 470 * BEST2 NA 0 NA 1.646 1 NA NA NA NA NA LTS-015 chr19 12864008 12876964 12957 * c(HOOK2, BEST2) 0.129 1 NA 2.22252591901323 93 0.357587606347289 8 8 0 -5.76454246978799 LTS-015 chr19 12876965 13317494 440530 * c(RNASEH2A, KLF1, NACC1, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, HOOK2, JUNB, LYL1, NFIX, TRMT1, RAD23A, PRDX2, CACNA1A, CALR, RTBDN, STX10, GADD45GIP1, IER2) 0.14097428454482 7 0.0255715615851821 2.2555423733292 925 0.415969014045326 9 8 1 -6.73905193515901 LTS-015 chr19 13317495 13443845 126351 * CACNA1A 0.266134024580324 2 0.0827314933988261 1.424949468479 219 0.399336732257333 4 3 1 -6.79467121223036 LTS-015 chr19 13443846 13445206 1361 * CACNA1A NA 0 NA 0.964 1 NA NA NA NA NA LTS-015 chr19 13445207 14492272 1047066 * c(LOC100507373, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, NANOS3, PALM3, MIR181C, CC2D1A, PRKACA, ASF1B, MIR181D, RFX1, C19orf67, ZSWIM4, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, SAMD1, DCAF15, IL27RA, ADGRE5) 0.285339466478408 20 0.0796535095205941 1.14677773257976 1204 0.259400637290466 4 3 1 -6.73341459973368 LTS-015 chr19 14492273 14492342 70 * ADGRE5 NA 0 NA 1.551 1 NA NA NA NA NA LTS-015 chr19 14492343 14583582 91240 * c(DDX39A, PKN1, PTGER1, ADGRE5) 0.206929114052356 4 0.0286400069832394 1.88056770384804 266 0.429216835212714 6 5 1 -6.7593928218996 LTS-015 chr19 14583583 14640350 56768 * c(GIPC1, DNAJB1, PTGER1) 0 1 NA 1.98317295578885 87 0.4246057268288 7 7 0 -5.76497684816134 LTS-015 chr19 14640351 14774414 134064 * c(CLEC17A, NDUFB7, MIR639, ADGRE3, TECR) 0.212962472264485 2 0.081317279836453 1.7636328473309 221 0.389618137367677 6 5 1 -6.74776437748908 LTS-015 chr19 14774415 14779587 5173 * ADGRE3 NA 0 NA 3.612 1 NA NA NA NA NA LTS-015 chr19 14779588 15587345 807758 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, OR1I1, CCDC105, BRD4, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, AKAP8L, ADGRE2, OR7A10, NOTCH3, WIZ, RASAL3, SLC1A6, EPHX3, ZNF333, ADGRE3, SYDE1) 0.114851992612911 37 0.0221445225706015 2.90537051711676 1417 0.801037809710075 11 10 1 -6.73378309379412 LTS-015 chr19 15587346 15640560 53215 * c(PGLYRP2, CYP4F22) NA 0 NA 2.86391926246548 18 0.661740231500948 11 NA NA -5.76441131130298 LTS-015 chr19 15640561 15726589 86029 * c(CYP4F8, CYP4F22) 0.199 1 NA 3.13731916633581 45 0.698051757075044 12 12 0 -5.76442859124793 LTS-015 chr19 15726590 16339030 612441 * c(CYP4F8, CIB3, LINC00661, OR10H4, LINC00905, FAM32A, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, RAB8A, CYP4F11, UCA1, CYP4F12, TPM4, HSH2D, CYP4F2, AP1M1) 0.217852276335469 27 0.0426164902609922 3.36478523838985 678 0.910680966352798 15 12 3 -6.74679838866392 LTS-015 chr19 16339031 16345329 6299 * AP1M1 NA 0 NA 3.21484848256202 17 0.280409102394844 12 NA NA -5.76447811818544 LTS-015 chr19 16345330 16435662 90333 * c(KLF2, AP1M1) NA 0 NA 0.996 1 NA NA NA NA NA LTS-015 chr19 16435663 16436262 600 * KLF2 0.482 1 NA 1.20733397120235 9 0.355582268961769 4 4 0 -5.76441779801868 LTS-015 chr19 16436263 19469296 3033034 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, KLF2, IFI30, CHERP, CERS1, COPE, CCDC124, NXNL1, CALR3, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, CPAMD8, NWD1, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, HAPLN4, BORCS8-MEF2B, MYO9B, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, NA NA NA NA NA NA NA NA NA LTS-015 PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ANO8, SUGP1, EPS15L1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, LOC729966, BORCS8, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, GTPBP3, MPV17L2, RFXANK, F2RL3, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, GDF15) 0.412034653495292 140 0.0615676350822389 1.31294714568611 6046 0.297107312053716 5 3 2 -6.80133584149624 LTS-015 NA NA NA NA LTS-015 chr19 19469297 19479040 9744 * MAU2 NA 0 NA 1.27632472775914 13 0.131915085352623 5 NA NA -5.76685398276738 LTS-015 chr19 19479041 19545876 66836 * GATAD2A NA 0 NA 0.584 1 NA NA NA NA NA LTS-015 chr19 19545877 19545990 114 * GATAD2A 0.125 1 NA 0.540285255347682 3 0.264985534196366 2 2 0 -5.76444808990287 LTS-015 chr19 19545991 22235526 2689536 * c(ZNF737, MIR1270, ZNF257, CILP2, ZNF738, ZNF714, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, YJEFN3, LINC00664, ZNF506, NDUFA13, GMIP, GATAD2A, ZNF253, ATP13A1, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF208, ZNF430, PBX4, ZNF93, TSSK6, ZNF486, ZNF682, LPAR2, ZNF101) 0.102438561915939 30 0.036698538916702 0.821589042208551 1562 0.235254564977545 3 3 0 -7.00501527881299 LTS-015 chr19 22235527 22256396 20870 * ZNF257 0.106 1 NA 1.03239707380084 7 0.626667337892244 4 4 0 -5.76475902100015 LTS-015 chr19 22256397 22937337 680941 * c(ZNF729, ZNF257, ZNF98, ZNF676, GOLGA2P9, ZNF492, ZNF99) 0.106692864967202 4 0.0185898717944297 0.820237033545422 180 0.21573884560601 3 3 0 -7.04409987405266 LTS-015 chr19 22937338 23688193 750856 * c(ZNF730, ZNF728, ZNF724, ZNF91, ZNF99) 0.445141000158847 5 0.0260518713339368 1.27313875046302 191 0.292355500008517 4 2 2 -6.8013678568204 LTS-015 chr19 23688194 24345121 656928 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.34938566331606 281 0.397667234711116 5 NA NA -5.76659975377924 LTS-015 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.358 1 NA 1.43780949300349 5 0.220803759025973 5 5 0 -5.78293364879777 LTS-015 chr19 29567135 34958003 5390869 * c(THEG5, UBA2, CEBPA, CEBPG, POP4, SLC7A9, WDR88, DPY19L3, ZNF507, LSM14A, GPI, LOC284395, VSTM2B, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, UQCRFS1, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, PDCD5, FAAP24, TDRD12, NA, KIAA0355, ZNF536) 0.407988070927893 58 0.0685578277155631 1.35534313485678 2255 0.343571172857313 5 3 2 -6.75046407134093 LTS-015 chr19 34958004 34959863 1860 * UBA2 NA 0 NA 0.826 1 NA NA NA NA NA LTS-015 chr19 34959864 35263683 303820 * c(SCGB2B3P, UBA2, WTIP, ZNF599, SCGB2B2, ZNF181, ZNF302, SCGB1B2P) 0.377 3 0.015 0.869428860484045 269 0.177291566683686 3 2 1 -7.13544750852453 LTS-015 chr19 35263684 38847431 3583748 * c(HPN-AS1, LINC01531, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, LOC100631378, LINC00904, MIR5196, UPK1A-AS1, TMEM147, SPINT2, HCST, UPK1A, TBCB, ARHGAP33, ZNF573, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, LGI4, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, NA NA NA NA NA NA NA NA NA LTS-015 LOC284412, HKR1, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, LOC400685, MAG, NPHS1, ATP4A, ZNF571, LSR, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, PSENEN, LIN37, GRAMD1A, ZFP14, ZNF529, HAMP, CATSPERG, PRODH2, SCN1B, C19orf33, SDHAF1, LOC644189, LOC644554, OVOL3, LOC728752, TYROBP, USF2, ZNF146, RBM42, LRFN3, IGFLR1, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF30, YIF1B, ZNF461, ZNF585B, DMKN, CD22, KCNK6, PPP1R14A, KMT2B) 0.416670625530738 140 0.0683740843904943 1.33036209164391 5994 0.282039149534414 5 3 2 -6.79317410636614 LTS-015 NA NA NA NA LTS-015 chr19 38847432 38853297 5866 * CATSPERG 0.413 1 NA 1.20516278043633 39 0.136820567701968 4 4 0 -5.76488237172597 LTS-015 chr19 38853298 38946174 92877 * c(RASGRP4, FAM98C, GGN, SPRED3, PSMD8, CATSPERG, RYR1) 0.400775548851129 4 0.0210475651798492 1.348059074603 369 0.395214426908628 5 3 2 -6.81239971875291 LTS-015 chr19 38946175 38946179 5 * RYR1 NA 0 NA 1.09 1 NA NA NA NA NA LTS-015 chr19 38946180 38980957 34778 * RYR1 0.325889687949655 10 0.0786324784466741 1.06563160471976 137 0.24073495172396 6 4 2 -6.85634759444989 LTS-015 chr19 38980958 38981214 257 * RYR1 NA 0 NA 1.492 1 NA NA NA NA NA LTS-015 chr19 38981215 39101943 120729 * c(MAP4K1, RYR1) 0.345965081828589 29 0.0820228551592354 1.29535378804104 447 0.282871851560477 6 4 2 -6.78324512257269 LTS-015 chr19 39101944 40376880 1274937 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, MAP4K1, FBXO17, CLC, EID2B, RINL, FBXO27, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, FCGBP, DYRK1B, TIMM50, GMFG) 0.394457923314122 64 0.054452797383212 0.9119960523718 2221 0.20071177065349 3 2 1 -6.91224737159042 LTS-015 chr19 40376881 40384094 7214 * FCGBP NA 0 NA 0.376 1 NA NA NA NA NA LTS-015 chr19 40384095 40406019 21925 * FCGBP 0.241 1 NA 0.467315611943244 39 0.252431591727391 1 1 0 -5.76731629083133 LTS-015 chr19 40406020 40406033 14 * FCGBP NA 0 NA 1.542 1 NA NA NA NA NA LTS-015 chr19 40406034 52133720 11727687 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, NA NA NA NA NA NA NA NA NA LTS-015 LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, KLK11, HNRNPUL1, CLASRP, KPTN, KLK8, EGLN2, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CLDND2, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, C19orf47, CRX, VSIG10L, C19orf84, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, CCDC155, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AP2A1, DBP, ZNF296, DEDD2, ZNF114, ZNF780B, SPACA4, DMPK, DMWD, MEGF8, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, AKT2, ETFB, FCGRT, ATF5, CARD8, CYP2G1P, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, SIGLEC7, LYPD3, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 EHD2, FOXA3, HRC, PRMT1, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, KCNA7, KCNC3, B3GNT8, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIM2, LIPE, SIGLEC16, LOC400710, IGLON5, BCAM, MIR150, MAP3K10, KLK14, KLK12, PSG8, MIR330, IGFL4, MYBPC2, CEACAM6, ATP1A3, NKG7, NOVA2, NPAS1, NTF4, NUCB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PAFAH1B3, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, RAB4B, POLD1, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, AXL, SMG9, IRGC, CABP5, PRRG2, KLK7, KLK6, KLK10, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, PSMC4, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, PRX, SPTBN4, MARK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RPS19, RRAS, RTN2, CLEC11A, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, VASP, XRCC1, ZNF45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF175, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, COQ8B, CNTD2, FUZ, OPA3, ITPKC, B9D2, CALM3, RSPH6A, MED25, SYMPK, MIA, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, SYT3, AKT1S1, CNFN, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, FCGBP, SIGLEC10, SIGLEC12, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CEACAM21, CCDC97, EXOC3L2, CTU1, ARHGEF1, NUMBL, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34, CD79A) 0.376135464597195 474 0.0728847690618505 0.902582668014564 20843 0.284624807951557 3 2 1 -6.74847000745568 LTS-015 NA NA NA NA LTS-015 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.468 1 NA NA NA NA NA LTS-015 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.43786554705305 3 0.0473849483837783 1.46795564318502 40 0.597016125281515 6 3 3 -6.73781294268029 LTS-015 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.99 1 NA NA NA NA NA LTS-015 chr19 52196825 59082605 6885781 * c(A1BG, MIMT1, MIR935, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ERVV-2, ZNF587B, MIR1283-2, MIR1323, MIR1283-1, ZNF865, ZNF816-ZNF321P, MIR4754, MIR4752, MIR371B, RNU6-64P, TRIM28, ZNF256, LILRB2, ZNF211, TRAPPC2B, ZNF274, ZNF460, LILRB1, LILRB5, SLC27A5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, BIRC8, RDH13, U2AF2, ZIM3, LENG8, KIR3DL3, ZNF837, ZNF816, ZNF543, COX6B2, OSCAR, ZNF813, NLRP13, NLRP8, NA NA NA NA NA NA NA NA NA LTS-015 NLRP5, ZNF787, ZFP28, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, TMC4, TPM3P9, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, CDC42EP5, ZNF836, ZNF610, ZNF600, ZNF320, ZNF497, ZNF550, ZNF579, ZNF525, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, FKBP1AP1, PPP6R1, LILRA4, FPR1, FPR2, FPR3, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, PRPF31, CHMP2A, ZNF544, UBE2S, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, ZNF615, ZNF841, LOC284379, VSTM1, TMEM150B, FAM71E2, TFPT, CCDC106, EPN1, HAS1, VN1R2, VN1R4, NLRP9, ZNF677, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, LILRA5, IL11, ZNF773, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, ZNF808, ZNF761, TMEM238, ZNF470, ZNF749, ZNF324B, LAIR1, LAIR2, ZNF818P, ZNF805, ZNF321P, ZNF880, ZNF772, TARM1, MIR372, MIR373, NDUFA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CNOT3, A1BG-AS1, DPRX, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, PPP2R1A, ZNF444, ZNF331, NLRP2, ZNF416, ZNF446, ZNF701, ZNF83, ZNF415, PRKCG, NAT14, VN1R1, ZNF304, TTYH1, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, ZNF471, USP29, PTPRH, ZNF71, CACNG8, CACNG7, CACNG6, ZNF350, RPL28, RPS5, RPS9, ZNF667, FAM90A27P, SBK2, RNF225, ZNF649, ZSCAN18, AURKC, SYT5, MIR643, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, ZNF28, MZF1, ZNF132, ZNF134, ZNF135, ZNF137P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ZNF154, TSEN34, MBOAT7, ZSCAN5A, LENG1, LILRP2, LILRA6, ZNF329, ZNF419, ISOC2, ZNF665, ZNF552, ZNF671, ZNF613, ZNF702P, ZNF606, ZNF614, ZNF611, ZNF528, BRSK1, ZNF347, ZNF577, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, KIR3DX1, ZNF551, ZNF616, ZNF766, ZNF468, ZNF160, UBE2M, ZNF835, ZNF765, NLRP12, MYADM, ZNF845, LENG9, ZNF264, NCR1, ZNF432) 0.374864271043385 419 0.0718608569170221 0.871404109655191 12772 0.273585671117043 3 2 1 -6.81277384273123 LTS-015 NA NA NA NA LTS-015 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.864434352885608 9 0.110889709972467 3 NA NA -5.76453655802352 LTS-015 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.452 1 NA 1.0958916170633 55 0.274759806949909 4 4 0 -5.76601693706165 LTS-015 chr20 168467 1559003 1390537 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.457321006789734 77 0.0609897182150914 1.11961306271425 1912 0.275393988127791 4 2 2 -6.77848397111156 LTS-015 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.578 1 NA NA NA NA NA LTS-015 chr20 1559182 1586631 27450 * SIRPB1 NA 0 NA 0.1589747014642 39 0.166177924418686 0 NA NA -5.76772223593271 LTS-015 chr20 1586632 1591938 5307 * SIRPB1 NA 0 NA 1.535 1 NA NA NA NA NA LTS-015 chr20 1591939 6057050 4465112 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, GPCPD1, CPXM1, MAVS, EBF4, PTPRA, NA NA NA NA NA NA NA NA NA LTS-015 FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.452828947445588 158 0.054757157037923 1.12754056782383 5160 0.261228095343611 4 2 2 -6.76856661998557 LTS-015 NA NA NA NA LTS-015 chr20 6057051 25666642 19609592 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, NA NA NA NA NA NA NA NA NA LTS-015 LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.458164273300009 128 0.0583826464204149 1.18170975144785 7349 0.374872808773622 4 2 2 -6.85743417730263 LTS-015 NA NA NA NA LTS-015 chr20 25666643 25752633 85991 * c(ZNF337, FAM182B) 0.209 1 NA 1.22936500336187 25 0.180957011469575 4 4 0 -5.77212209591202 LTS-015 chr20 25752634 25900230 147597 * FAM182B 0.329475834554864 8 0.087779655143677 1.16531876847048 32 0.337048525689336 6 4 2 -6.85500613287888 LTS-015 chr20 25900231 26188981 288751 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.355512343929799 15 0.090688215226414 0.902097724359496 47 0.523943745170803 3 2 1 -6.73882415137734 LTS-015 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.812669407700594 3 0.0144337567297407 3 NA NA -5.76561297743588 LTS-015 chr20 29625845 29625876 32 * FRG1BP 0.255 1 NA 0.92 1 NA NA NA NA NA LTS-015 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.288605502722455 21 0.116203516052042 0.817670564762018 49 0.336657218076478 4 3 1 -6.74895218699417 LTS-015 chr20 29652192 29652219 28 * FRG1BP NA 0 NA 0.718425426235515 3 0.00923760430703408 2 NA NA -5.76583684011473 LTS-015 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 1.106 1 NA NA NA NA NA LTS-015 chr20 29845417 30449177 603761 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, LINC00028, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.409 1 NA 1.17246712791245 614 0.225605107504928 4 4 0 -5.76804921405571 LTS-015 chr20 30449178 62906157 32456980 * c(ADA, ACOT8, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, LOC100287792, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, TGIF2-C20orf24, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR499B, MIR4756, MIR4758, MIR4532, MIR4533, MIR4755, MIR5095, LINC00659, ATP9A, LINC00489, NA NA NA NA NA NA NA NA NA LTS-015 TRERNA1, SGK2, RBM12, ARFRP1, OGFR-AS1, MMP24-AS1, RGS19, SYCP2, MYL9, WFDC2, CEBPB, PROCR, ARFGEF2, TCFL5, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, ADRM1, OGFR, UBE2C, DIDO1, PTPRT, PKIG, CEP250, HRH3, PXMP4, TP53RK, RBPJL, CHRNA4, DNTTIP1, FAM210B, PHACTR3, BHLHE23, NKAIN4, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 CHMP4B, PIGU, HMGB3P1, FAM83C, COL9A3, GATA5, SLC32A1, BPIFA2, ZBTB46, WFDC3, GCNT7, NOL4L, CBLN4, CTCFL, MROH8, SAMD10, ABHD16B, CCM2L, SOGA1, TLDC2, RIMS4, SUN5, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, FAM65C, RBBP8NL, CNBD2, R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, LOC149950, COMMD7, BPIFB4, LSM14B, CTSZ, CYP24A1, WFDC13, APCDD1L, TTLL9, ACTL10, ASXL1, DNMT3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 E2F1, EDN3, AHCY, EEF1A2, LKAAEAR1, FAM209A, EPB41L1, EYA2, DLGAP4, RALY, MAPRE1, ZHX3, NCOA6, SLC9A8, ADNP, POFUT1, ZMYND8, SPO11, PRPF6, C20orf166-AS1, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, SS18L1, PPP1R16B, TRPC4AP, MTG2, GMEB2, SNORD12C, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, MOCS3, GNAS, WFDC10B, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, C20orf203, GSS, HCK, HNF4A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 BPIFA4P, LOC339568, ARHGAP40, XKR7, BPIFB3, EIF6, KCNB1, KCNG1, KCNQ2, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, LAMA5, SPINT4, SUMO1P1, LBP, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ASIP, ZFAS1, MYBL2, MYT1, NFATC2, NNAT, NTSR1, OPRL1, STMN3, SLC35C2, PRELID3B, PCK1, IFT52, PHF20, SCAND1, BPIFA1, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, ERGIC3, CDK5RAP1, RTEL1, PFDN4, PI3, PLAGL2, PLCG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, UQCC1, PCMTD2, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, ARFGAP1, EDEM2, DOK5, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, SLC2A4RG, PSMA7, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, NDRG3, MIR499A, SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, MYH7B, PTPN1, NCOA5, TP53INP2, RPRD1B, RBL1, TGIF2, CDH26, KCNK15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 DHX35, RPN2, RPS21, SDC4, MANBAL, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, NECAB3, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, SNTA1, SPAG4, BPI, SRC, SRMS, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, TAF4, TCEA2, SNORD12, MIR644A, MIR645, MIR647, TFAP2C, TGM2, TNNC2, TOP1, TPD52L2, UBE2V1, YWHAB, SYS1-DBNDD2, HAR1A, HAR1B, MKRN7P, ZNF217, GDAP1L1, LINC01260, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 FNDC11, PPDPF, TTPAL, BIRC7, NPEPL1, ACTR5, DSN1, DNAJC5, PABPC1L, BPIFB2, TUBB1, ZBP1, SLC2A10, PDRG1, FAM83D, CABLES2, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, PARD6B, ZGPAT, RAE1, ZNF341, TOX2, BCAS1, HELZ2, KIAA1755, STX16, TNFRSF6B, MATN4, DPM1, WISP2, EIF2S2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, CBFA2T2, VAPB, BPIFB1, B4GALT5, KIF3B, CD40, RBM39, TTI1, TM9SF4, SPATA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 OSBPL2, MAFB) 0.456962128280458 703 0.0481254039348929 1.14379027472756 30650 0.268337761873671 4 2 2 -6.79444883992086 LTS-015 NA NA NA NA LTS-015 chr20 62906158 62959313 53156 * c(LINC00266-1, PCMTD2) NA 0 NA 1.25319392643461 43 0.72623162122242 4 NA NA -5.76489128287666 LTS-015 chr21 9825764 9825966 203 * MIR3648-1 0.26 1 NA 0.677502709259253 5 0.569630757596533 2 2 0 -5.7644104285801 LTS-015 chr21 9825967 9909301 83335 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.0941473471464109 11 0.0448115244917279 0.913324563706189 56 1.29844933690902 3 3 0 -6.73320675982772 LTS-015 chr21 10793872 10793925 54 * character(0) 0.153 1 NA 0.525 1 NA NA NA NA NA LTS-015 chr21 10793926 10862599 68674 * character(0) 0.223 1 NA 0.613438891462358 3 0.120769753387731 2 2 0 -5.77872973629599 LTS-015 chr21 10862600 10944816 82217 * TPTE 0.295414138445982 6 0.110106614999584 0.657171909191743 59 0.366616370901803 4 3 1 -6.84772826043873 LTS-015 chr21 10944817 10959723 14907 * TPTE NA 0 NA 0.873 1 NA NA NA NA NA LTS-015 chr21 10959724 11059877 100154 * c(BAGE, TPTE, BAGE3) 0.299456413802164 13 0.121252385649277 1.05615124328747 67 0.762951671060816 4 3 1 -6.73969523988445 LTS-015 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.04319990634392 5 0.295534769528054 4 NA NA -5.76677981353945 LTS-015 chr21 14745307 14756973 11667 * character(0) 0.092 1 NA 0.964644723340085 17 0.79629557307942 3 3 0 -5.76445907949063 LTS-015 chr21 14756974 15966430 1209457 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.0751402297185435 13 0.0263197790498091 1.0370523314169 388 0.309633242388609 4 4 0 -6.80808812075437 LTS-015 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 1.541 1 NA NA NA NA NA LTS-015 chr21 15974248 30300934 14326687 * c(LINC01549, MIR4759, RNU6-67P, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, C21orf91-OT1, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, NRIP1, ADAMTS1) 0.0697948352831889 46 0.0234563218305093 1.14783483594922 2190 0.363911988542163 4 4 0 -6.75960825498174 LTS-015 chr21 30300935 31312350 1011416 * c(GRIK1-AS2, RWDD2B, USP16, CCT8, LINC00189, LTN1, GRIK1, MAP3K7CL, BACH1, GRIK1-AS1) 0.0755980276041856 14 0.0228892459993243 1.04110958524039 793 0.236331820365204 4 4 0 -6.83280207309699 LTS-015 chr21 31312351 31538170 225820 * character(0) NA 0 NA 0.436 1 NA NA NA NA NA LTS-015 chr21 31538171 31692612 154442 * c(KRTAP25-1, CLDN17, LINC00307, KRTAP26-1, KRTAP24-1, CLDN8) NA 0 NA 0.376654693197186 139 0.0643706464718398 1 NA NA -5.96776519523114 LTS-015 chr21 31692613 31709301 16689 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-015 chr21 31709302 36163393 4454092 * c(KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, MIR4327, PAXBP1-AS1, LINC00649, LINC01426, LINC00159, OLIG2, LINC00310, OLIG1, KRTAP13-1, TCP10L, RCAN1, KRTAP15-1, GART, KRTAP13-4, DONSON, HUNK, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, NA NA NA NA NA NA NA NA NA LTS-015 IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, KRTAP27-1, ITSN1, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, KRTAP19-8, LINC01548, TMEM50B, URB1-AS1, RUNX1, SYNJ1, PAXBP1, URB1, CRYZL1, KCNE2) 0.0884882330559075 57 0.0398280845106751 0.915972984207034 4275 0.313606984466002 3 3 0 -6.7545353117402 LTS-015 NA NA NA NA LTS-015 chr21 36163394 37618700 1455307 * c(LOC100133286, LOC100506403, CBR3-AS1, SETD4, MIR802, RUNX1-IT1, RUNX1, CBR1, CBR3, DOPEY2) 0.0551742734471042 7 0.0113682934180155 1.35912298286497 509 0.286409354465359 5 5 0 -6.9259155717751 LTS-015 chr21 37618701 38997772 1379072 * c(DSCR3, DYRK1A, MORC3, CLDN14, DSCR9, HLCS, KCNJ6, PIGP, RIPPLY3, SIM2, TTC3, CHAF1B, DOPEY2) 0.0527118798184993 36 0.0833383379449613 1.71035897033064 1433 0.723528592136431 6 6 0 -6.73635545337168 LTS-015 chr21 38997773 39086528 88756 * KCNJ6 NA 0 NA 1.039 1 NA NA NA NA NA LTS-015 chr21 39086529 42880009 3793481 * c(MIR3197, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, DSCR4, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, PLAC4, ERG, ETS2, NA, BACE2, DSCR10, LINC00323, HMGN1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, PCP4, BRWD1, FAM3B, SH3BGR, TMPRSS2, WRB, DSCR8, PSMG1) 0.0964618951646125 40 0.0635660568994459 0.950058916467462 2062 0.328702096754498 3 3 0 -6.78843139395447 LTS-015 chr21 42880010 43132943 252934 * c(LINC00479, LINC00111, TMPRSS2) NA 0 NA 1.668 1 NA NA NA NA NA LTS-015 chr21 43132944 43342238 209295 * c(LINC00479, C2CD2, LINC00112, RIPK4, PRDM15) 0.0658488892827646 9 0.0081257478288326 1.41024345741382 496 0.409272837822851 5 5 0 -6.8906920965643 LTS-015 chr21 43342239 43373462 31224 * C2CD2 NA 0 NA 0.706 1 NA NA NA NA NA LTS-015 chr21 43373463 43766669 393207 * c(UMODL1-AS1, C2CD2, ZBTB21, TFF2, TFF3, UMODL1, ABCG1) 0.0875260920842621 15 0.0207509035947835 0.902829648332678 535 0.245579841147359 3 3 0 -6.80801313955006 LTS-015 chr21 43766670 43938640 171971 * c(UBASH3A, SLC37A1, TMPRSS3, TFF1, TFF2, RSPH1) 0.0575582751477493 11 0.0227819705429136 1.35761616760799 297 0.491053683203751 5 5 0 -6.75237548306882 LTS-015 chr21 43938641 43938673 33 * SLC37A1 0.066 1 NA 0.166 1 NA NA NA NA NA LTS-015 chr21 43938674 45878009 1939336 * c(LRRC3-AS1, WDR4, HSF2BP, LINC00313, CRYAA, CSTB, SIK1, RRP1B, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, NDUFV3, PDE9A, PFKL, PKNOX1, SLC37A1, AGPAT3, PWP2, TRAPPC10, TRPM2, U2AF1, C21orf2, LRRC3, C21orf33, PDXK, RRP1, CBS) 0.0941639992274269 59 0.0388805811541253 0.92254907107133 2764 0.235886608205148 3 3 0 -6.74332465195021 LTS-015 chr21 45878010 45970287 92278 * c(TSPEAR-AS2, KRTAP10-1, TSPEAR, LRRC3) 0.421 1 NA 0.921071826852003 201 0.16630911338237 3 3 0 -5.76524027288536 LTS-015 chr21 45970288 46057640 87353 * c(KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, TSPEAR) 0.300139680659384 12 0.18971244188524 0.931705131666557 186 0.469123420320464 4 3 1 -6.74596455316114 LTS-015 chr21 46057641 48084989 2027349 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-11, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PCNT, PCBP3, C21orf58, YBEY, TSPEAR, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.272236379875712 78 0.0610618889247154 1.15775769053155 2952 0.355839778296319 4 3 1 -6.77053114535139 LTS-015 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 1.348 1 NA NA NA NA NA LTS-015 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.399 1 NA 1.06370924543785 5 0.115949557998295 4 4 0 -5.9410679533087 LTS-015 chr22 16887896 20305282 3417387 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, PRODH, NA NA NA NA NA NA NA NA NA LTS-015 MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.136198987575023 128 0.0445184094451673 0.667058932029084 4477 0.185827698892562 2 2 0 -6.75386893313071 LTS-015 NA NA NA NA LTS-015 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.605 1 NA NA NA NA NA LTS-015 chr22 20307254 20398710 91457 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.297998883130175 39 0.22264134239047 1 NA NA -5.88347435905088 LTS-015 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.73 1 NA NA NA NA NA LTS-015 chr22 20717835 24340866 3623032 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, NA NA NA NA NA NA NA NA NA LTS-015 SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.153172844075816 117 0.0684146493810084 0.660546759420506 4366 0.193173938467346 2 2 0 -6.8014202632936 LTS-015 NA NA NA NA LTS-015 chr22 24340867 24340940 74 * GSTTP1 0.126 1 NA 1.765 1 NA NA NA NA NA LTS-015 chr22 24340941 24384316 43376 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.15424996445402 59 0.265373497034109 4 NA NA -5.76442803278033 LTS-015 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.673 1 NA NA NA NA NA LTS-015 chr22 24400149 48885574 24485426 * c(LOC100128531, LOC100130899, NDUFA6-AS1, LINC00899, MIR1249, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3201, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3619, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4764, ZNRF3-AS1, EFCAB6-AS1, APOBEC3A_B, DNAL4, SF3A1, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, NUP50, TOB2, NA NA NA NA NA NA NA NA NA LTS-015 KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PACSIN2, PHF21B, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 WBP2NL, POLR3H, CYB5R3, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, FBLN1, MORC2, TNRC6B, GRAMD4, TTLL12, ZC3H7B, KIAA0930, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, ARHGAP8, APOL2, AP1B1P1, TFIP11, PRR14L, SERHL2, BPIFC, XRCC6, TMEM211, C22orf31, TBC1D22A, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TTLL1, SAMM50, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 ATXN10, FAM19A5, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, SEC14L3, RNU12, ATP5L2, GGT1, SNORD43, GGT5, INPP5J, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, POM121L9P, CARD10, PARVB, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, SDC4P, LRRC75B, OGFRP1, LINC00207, LGALS1, LGALS2, LIF, LIMK2, LOC400927, MIRLET7BHG, LINC00898, SRRD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 MIRLET7A3, MIRLET7B, MIR33A, LINC00229, MB, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, GTSE1, MTFP1, PDGFB, UPB1, PMM1, A4GALT, POLR2F, MIEF1, PPARA, TUG1, FAM118A, TTC38, CCDC157, PRR34, PRR5-ARHGAP8, PRR5, TRMU, ZMAT5, SEPT3, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 RFPL1, APOBEC3G, RPL3, BIK, XPNPEP3, PARVG, BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, CERK, EFCAB6, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TSPO, TIMP3, TOP1P2, MIR658, MIR659, TST, SEC14L6, LOC730668, UPK3A, WNT7B, XBP1, YWHAH, MPPED1, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, SCUBE1, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GUCD1, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, LDOC1L, POLDIP3, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1644, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, CELSR1, DEPDC5, SFI1, JOSD1, RBX1) 0.130687974137173 567 0.0433436345404349 0.653773748869925 26416 0.188640984303647 2 2 0 -6.75692712843985 LTS-015 NA NA NA NA LTS-015 chr22 48885575 48896668 11094 * FAM19A5 NA 0 NA 0.358 1 NA NA NA NA NA LTS-015 chr22 48896669 49145928 249260 * c(FAM19A5, LOC284933) 0.027 1 NA 0.452699542188985 53 0.132951560959936 1 1 0 -5.82763607566121 LTS-015 chr22 49145929 49146899 971 * FAM19A5 0.25 1 NA 0.480423680110993 21 0.102547851780337 1 1 0 -5.76559514863889 LTS-015 chr22 49146900 51117580 1970681 * c(LINC01310, CHKB-AS1, MIR4535, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, BRD1, FAM19A5, NCAPH2, C22orf34, CHKB-CPT1B, IL17REL, ARSA, DENND6B, PIM3, ODF3B, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, PPP6R2, ZBED4, SCO2) 0.21240660476727 110 0.0640772729920295 0.410518632848119 3087 0.130212705264985 1 1 0 -6.74664149280719 LTS-015 chr22 51117581 51220846 103266 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.396814163592517 237 0.113859689025366 1 NA NA -5.77401188521958 LTS-015 chrX 2699993 2733109 33117 * XG 0.476 1 NA 0.580194586678457 43 0.173679010450591 2 2 0 -5.77501538087059 LTS-015 chrX 2733110 11785439 9052330 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.434731252243277 49 0.0810993920726772 0.65765564374982 2651 0.164616221544472 2 1 1 -6.73795217341774 LTS-015 chrX 11785440 16870941 5085502 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.453721761477096 48 0.0431119224183975 0.61260183010287 2919 0.145256170623307 2 1 1 -7.45973092259156 LTS-015 chrX 16870942 16871744 803 * RBBP7 NA 0 NA 0.722 1 NA NA NA NA NA LTS-015 chrX 16871745 23416946 6545202 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, PTCHD1, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, RBBP7, RPS6KA3, RS1, SCML1, SMS, CDKL5, LOC729609, REPS2) 0.429828951941902 30 0.0520867534509252 0.660437198810878 3568 0.154892771065893 2 1 1 -6.76480269906408 LTS-015 chrX 23416947 23416998 52 * character(0) NA 0 NA 0.599 1 NA NA NA NA NA LTS-015 chrX 23416999 24577151 1160153 * c(SUPT20HL1, ZFX-AS1, PRDX4, SUPT20HL2, EIF2S3, ACOT9, CXorf58, PDK3, SAT1, ZFX, APOO, KLHL15, PCYT1B) 0.446622427359994 14 0.0366663752902176 0.602619920247668 987 0.132912015206836 2 1 1 -7.04147061232112 LTS-015 chrX 24577152 24577580 429 * PCYT1B NA 0 NA 0.671 1 NA NA NA NA NA LTS-015 chrX 24577581 37314990 12737410 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, FAM47A, MAGEB6, FAM47B, NA, ARX, DMD, NR0B1, TAB3, GK, CFAP47, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, POLA1, PRRG1, NA, SCARNA23, CXorf21, TMEM47, PCYT1B) 0.456042356057132 34 0.0560954194068586 0.666722773125264 2455 0.162334071634451 2 1 1 -6.81385956487286 LTS-015 chrX 37314991 37431322 116332 * c(LANCL3, PRRG1) NA 0 NA 0.997307197442016 39 0.237838991683265 3 NA NA -5.77669596885745 LTS-015 chrX 37431323 37431386 64 * LANCL3 NA 0 NA 0.572 1 NA NA NA NA NA LTS-015 chrX 37431387 47433739 10002353 * c(SNORA11C, LOC100132831, ATP6AP2, FUNDC1, CYBB, CXorf38, DDX3X, HYPM, GPR82, GPR34, LINC01281, LANCL3, MPC1L, ARAF, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, OTC, CDK16, NDUFB11, BCOR, KRBOX4, CHST7, MID1IP1, NYX, RP2, RPGR, DUSP21, ZNF674, SYN1, DYNLT3, TSPAN7, LINC01545, UBA1, KDM6A, XK, ZNF41, ZNF157, CXorf36, EFHC2, PPP1R2P9, USP11, USP9X, RBM10, SRPX, SLC9A7, INE1, CASK, RGN, NA NA NA NA NA NA NA NA NA LTS-015 MED14, SYTL5, JADE3) 0.452710439262483 25 0.0404103947023535 0.64415307104926 4428 0.133860548940709 2 1 1 -6.94156117091455 LTS-015 NA NA NA NA LTS-015 chrX 47433740 47433769 30 * SYN1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-015 chrX 47433770 48823976 1390207 * c(HDAC6, UXT-AS1, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, ELK1, FTSJ1, GATA1, PCSK1N, SSX6, SSX9, ERAS, ZNF81, KCND1, SPACA5, CXXC1P1, GLOD5, TBC1D25, CFP, OTUD5, ZNF630, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, TIMP1, SLC35A2, WAS, ZNF182, UXT, SLC38A5) 0.417452024939901 8 0.0438241208859752 0.74433192176407 1991 0.152499602350021 2 1 1 -7.40277192440088 LTS-015 chrX 48823977 48826976 3000 * KCND1 0.338 1 NA 0.761129092065838 49 0.176007102129431 2 2 0 -5.76562174472748 LTS-015 chrX 48826977 51489158 2662182 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, GPKOW, CCDC22, KCND1, USP27X, PRICKLE3, MIR188, FOXP3, PLP2, NUDT11, GRIPAP1, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, SYP, MIR532, TFE3, MIR660, GAGE12J, GAGE2D, GAGE2A, CACNA1F, MAGIX, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, PAGE4) 0.39746918363498 13 0.0499341874563217 0.76993520772363 2265 0.16276896987843 3 2 1 -8.21562885600311 LTS-015 chrX 51489159 54522364 3033206 * c(HUWE1, RIBC1, XAGE3, XAGE5, FGD1, IQSEC2, PHF8, GSPT2, SSX7, SSX8, HSD17B10, MIRLET7F2, MIR98, SPANXN5, GPR173, FAM120C, TSPYL2, WNK3, XAGE1B, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, MAGED1) 0.356497982755912 8 0.0348343016497901 0.854009087750421 2372 0.184058975063164 3 2 1 -6.92351958527595 LTS-015 chrX 54522365 55172708 650344 * c(MAGED2, PAGE2, ALAS2, FGD1, APEX2, ITIH6, PAGE2B, PFKFB1, GNL3L, SNORA11, TRO, FAM104B) 0.315873989583209 15 0.0862939053191945 0.923268108080751 735 0.194196692791863 3 2 1 -6.92256336767904 LTS-015 chrX 55172709 57937169 2764461 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) NA 0 NA 0.888795812873236 817 0.208261267370954 3 NA NA -5.77335457133645 LTS-015 chrX 61999880 63005398 1005519 * c(SPIN4, ARHGEF9, LINC01278) NA 0 NA 0.937997283201297 233 0.231558709521593 3 NA NA -5.78110624074843 LTS-015 chrX 63005399 63005840 442 * ARHGEF9 NA 0 NA 1.221 1 NA NA NA NA NA LTS-015 chrX 63005841 63576274 570434 * c(MIR1468, AMER1, ASB12, MTMR8) NA 0 NA 1.16829394220715 267 0.174327886197733 4 NA NA -5.76849574407988 LTS-015 chrX 63576275 63579221 2947 * MTMR8 NA 0 NA 0.918 1 NA NA NA NA NA LTS-015 chrX 63579222 65382685 1803464 * c(VSIG4, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, HEPH) 0.34 1 NA 0.875693615770078 535 0.191917041124042 3 3 0 -5.79100844459751 LTS-015 chrX 65382686 101439808 36057123 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, MIR676, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, DACH2, COX7B, MAP2K4P1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, YIPF6, NA NA NA NA NA NA NA NA NA LTS-015 TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, XKRX, ARR3, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 GDPD2, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, STARD8, ARMCX2, HEPH, MED12) 0.336848267426389 65 0.0723930842957126 0.899059186433279 12104 0.509363703525733 3 2 1 -6.82009629534116 LTS-015 NA NA NA NA LTS-015 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.408 1 NA NA NA NA NA LTS-015 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.402758271760351 43 0.258837795597318 1 NA NA -5.76563550797971 LTS-015 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.828 1 NA NA NA NA NA LTS-015 chrX 101768565 115591096 13822532 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, GLRA4, NA NA NA NA NA NA NA NA NA LTS-015 PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.308122519589882 43 0.0814898032876943 0.908669865737027 6664 0.200068929014802 3 2 1 -7.01621333238655 LTS-015 NA NA NA NA LTS-015 chrX 115591097 139793912 24202816 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, SLC6A14, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, CT83, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, NA NA NA NA NA NA NA NA NA LTS-015 GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.317389128712324 93 0.0733022013054351 0.875814044906015 9621 0.268937877373266 3 2 1 -7.1461410724401 LTS-015 NA NA NA NA LTS-015 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 1.029 1 NA NA NA NA NA LTS-015 chrX 139795670 153707443 13911774 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, NA NA NA NA NA NA NA NA NA LTS-015 GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, LINC00632, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-015 PDZD4, OPN1LW, RENBP, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, LAGE3, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.321775568367766 140 0.0519593776620718 0.915635373798547 7372 0.259001907384276 3 2 1 -7.13818274068107 LTS-015 NA NA NA NA LTS-015 chrX 153707444 154286043 578600 * c(SMIM9, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, FAM3A, FUNDC2, SNORA36A, SNORA56, UBL4A, LAGE3, SLC10A3, IKBKG) 0.3188246709844 19 0.0928650533228457 0.853311399593447 977 0.310385817622731 3 2 1 -6.88564177274309 LTS-015 chrX 154286044 154774986 488943 * c(CMC4, RAB39B, CLIC2, MTCP1, TMLHE, VBP1, BRCC3) NA 0 NA 0.856231425194435 411 0.192459410862101 3 NA NA -5.78626967125047 LTS-015 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.868845662378561 25 0.342319115251642 3 NA NA -5.76946751668914 LTS-015 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.538763580683372 19 0.317140605635245 2 NA NA -7.23158642688665 LTS-015 chr1 65893 876499 810607 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.067 1 NA 0.713541942201784 75 0.209889789183761 4 4 0 -5.83419058772422 LTS-016 chr1 876500 1412659 536160 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, HES4, SCNN1D, TMEM88B, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.0456398907200174 32 0.0300043007669922 0.68768448233861 2235 0.207679789246319 4 4 0 -6.757991526233 LTS-016 chr1 1412660 1421916 9257 * ATAD3B 0.299 1 NA 0.538019316167967 44 0.305252527767167 3 3 0 -5.76457670801009 LTS-016 chr1 1421917 1591452 169536 * c(MIB2, SSU72, TMEM240, ATAD3A, FNDC10, SLC35E2B, ATAD3B, MMP23B, CDK11B) 0.35771960819345 8 0.140902195055395 0.722883289461757 534 0.254774989267751 5 3 2 -6.79062116535845 LTS-016 chr1 1591453 1596048 4596 * c(SLC35E2B, CDK11B) 0.426 1 NA 0.967449381741811 72 0.250839937601201 6 6 0 -5.76441692198733 LTS-016 chr1 1596049 1596058 10 * c(SLC35E2B, CDK11B) NA 0 NA 0.738 1 NA NA NA NA NA LTS-016 chr1 1596059 1608309 12251 * c(SLC35E2B, CDK11B) 0.492 1 NA 0.664689415808132 60 0.192623710340422 4 4 0 -5.76442634149964 LTS-016 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.097 1 NA NA NA NA NA LTS-016 chr1 1630372 1636501 6130 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.0692853750503346 5 0.0269499536177709 0.446051343622265 62 0.25182964168144 3 3 0 -6.75602507752535 LTS-016 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.054 1 NA NA NA NA NA LTS-016 chr1 1637054 1646693 9640 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.227350411974147 50 0.152159450470048 1 NA NA -5.76539158722573 LTS-016 chr1 1646694 1647928 1235 * c(CDK11A, SLC35E2B, CDK11B) 0.313581077807419 3 0.266740198195423 0.631120009548948 7 0.204662090843838 7 5 2 -6.74056656932749 LTS-016 chr1 1647929 1650787 2859 * c(CDK11A, SLC35E2B, CDK11B) 0.471 1 NA 0.561934712983567 3 0.119804006610797 3 3 0 -5.76551921673602 LTS-016 chr1 1650788 1666251 15464 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.437077516508861 9 0.0485088766218216 0.403058120827911 122 0.165613127193042 2 1 1 -6.86420063599612 LTS-016 chr1 1666252 1671167 4916 * c(SLC35E2B, SLC35E2) NA 0 NA 0.46188035125028 13 0.120068303210704 3 NA NA -5.76644367739995 LTS-016 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 0.801 1 NA NA NA NA NA LTS-016 chr1 1682940 1846357 163418 * c(CALML6, GNB1, NADK) 0.1 1 NA 0.693820647792572 169 0.189745515533243 4 4 0 -5.77174779116455 LTS-016 chr1 1846358 6545381 4699024 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, CALML6, DFFB, MEGF6, FAAP20, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, LOC284661, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, MIR551A, TP73, LINC01346, MMEL1, MORN1, ESPN, NA NA NA NA NA NA NA NA NA LTS-016 KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PLCH2, CEP104) 0.0495733099599982 110 0.0289088816144248 0.731849846478445 4246 0.368395809934527 4 4 0 -6.95498514652939 LTS-016 NA NA NA NA LTS-016 chr1 6545382 6545390 9 * PLEKHG5 0.042 1 NA 0.058 1 NA NA NA NA NA LTS-016 chr1 6545391 12907351 6361961 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, AADACL3, CORT, C1orf127, PHF13, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, ZBTB48, AADACL4, HNRNPCL1, TNFRSF9, DRAXIN, CENPS, PRAMEF12, MIR34A, PRAMEF11, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, NA NA NA NA NA NA NA NA NA LTS-016 DNAJC11, CTNNBIP1, AGTRAP, PLEKHG5, DISP3, MIIP, PIK3CD-AS1, NMNAT1, HNRNPCL3, PRAMEF1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, NOL9, GPR157, SPSB1, TAS1R1, SLC25A33, LZIC, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, KLHL21, MFN2) 0.0513251750297122 124 0.0301783838938622 0.65251848133428 7728 0.260060353744744 4 4 0 -6.73971129682883 LTS-016 NA NA NA NA LTS-016 chr1 12907352 13802437 895086 * c(LRRC38, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF2, PRAMEF22, NA) 0.309915303182928 9 0.12725968638095 0.68512827840128 97 0.758427783618136 4 3 1 -6.77979719240591 LTS-016 chr1 13802438 13840369 37932 * LRRC38 0.039 1 NA 0.6854948416619 23 0.194408386016035 4 4 0 -5.76536701325233 LTS-016 chr1 13840370 16349080 2508711 * c(PDPN, CTRC, FHAD1, CLCNKA, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.049065947542315 44 0.0251260669206431 0.659511075215429 2260 0.412424393398676 4 4 0 -6.73347097878148 LTS-016 chr1 16349081 16362712 13632 * c(CLCNKA, CLCNKB) 0.074 1 NA 0.620046712219268 115 0.267564954794766 4 4 0 -5.76482797717126 LTS-016 chr1 16362713 16385874 23162 * c(CLCNKB, FAM131C) 0.385863955627284 9 0.140944137870292 0.758434739015317 131 0.208271099696714 5 3 2 -6.73606792323096 LTS-016 chr1 16385875 16451200 65326 * c(EPHA2, FAM131C) 0.062 1 NA 0.682169342496562 19 0.175347341178814 4 4 0 -5.76597160830988 LTS-016 chr1 16451201 16725330 274130 * c(ARHGEF19, EPHA2, SZRD1, SPATA21, FBXO42, RSG1) 0.0552921763604253 12 0.028490694919038 0.638022077883531 542 0.171984254006168 4 4 0 -6.76140784419808 LTS-016 chr1 16725331 16862454 137124 * c(CROCCP3, SPATA21, NECAP2) 0.377 1 NA 0.679867602237606 155 0.174317309112976 4 4 0 -5.76711658559332 LTS-016 chr1 16862455 16969373 106919 * c(NBPF1, CROCCP2) 0.321769097463912 7 0.07292233311316 0.600591955563734 26 0.228016520993883 3 2 1 -6.86394330720642 LTS-016 chr1 16969374 16971986 2613 * CROCCP2 NA 0 NA 0.501 1 NA NA NA NA NA LTS-016 chr1 16971987 16975853 3867 * MST1P2 0.281125066263568 11 0.109856352487319 0.468026152986337 65 0.287318569006867 4 3 1 -6.7382940759678 LTS-016 chr1 16975854 16978916 3063 * MST1P2 0.241044681174972 3 0.216006944332815 0.197218160591196 76 0.182482685071426 4 3 1 -6.82683562767492 LTS-016 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-016 chr1 17009684 17046605 36922 * ESPNP 0.34898790824796 23 0.0803679040413522 1.2133995534236 134 0.498424898699029 6 4 2 -6.74203076167925 LTS-016 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.637 1 NA NA NA NA NA LTS-016 chr1 17081542 17198553 117012 * c(MST1L, CROCC) 0.292527658839859 20 0.104025034942252 0.750795174143942 175 0.457520130435476 4 3 1 -6.75613012158594 LTS-016 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.355 1 NA NA NA NA NA LTS-016 chr1 17248433 17270751 22319 * CROCC 0.475355113458672 4 0.0153704261489394 1.2206689205206 62 0.360582835091264 8 4 4 -10.9917411774044 LTS-016 chr1 17270752 17274945 4194 * CROCC NA 0 NA 1.67113975203454 17 0.436805229849105 11 NA NA -5.76441334747536 LTS-016 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.675 1 NA NA NA NA NA LTS-016 chr1 17275408 17313454 38047 * c(ATP13A2, MFAP2, CROCC) 0.035 1 NA 0.699514102370815 157 0.128185889410645 4 4 0 -5.76942579139102 LTS-016 chr1 17313455 19437035 2123581 * c(MIR4695, PADI2, IFFO2, KLHDC7A, UBR4, ATP13A2, PADI4, PADI1, PADI6, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.0347261093262618 27 0.0306899298609787 0.727370186641383 1828 0.406805166227653 5 5 0 -6.83738496934478 LTS-016 chr1 19437036 19437238 203 * UBR4 NA 0 NA 0.503 1 NA NA NA NA NA LTS-016 chr1 19437239 21544791 2107553 * c(LOC100506730, MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, EIF4G3, CDA) 0.0479650836929426 33 0.0310269616379827 0.658535884483701 2903 0.238018598921083 4 4 0 -6.73498749824873 LTS-016 chr1 21544792 21750008 205217 * c(LOC100506801, ECE1) 0.432 1 NA 0.694585271121691 129 0.245920342882822 4 4 0 -5.77013242147867 LTS-016 chr1 21750009 21808159 58151 * NBPF3 0.27545425400775 13 0.173522591450191 0.692015956619123 157 0.406997517007459 4 3 1 -6.73355069072198 LTS-016 chr1 21808160 21903180 95021 * c(ALPL, NBPF3) 0.056 1 NA 0.776569182622033 65 0.276971586296112 5 5 0 -5.76551461166299 LTS-016 chr1 21903181 24791862 2888682 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, LDLRAD2, WNT4, ASAP3, PNRC2, PITHD1, NIPAL3, GRHL3, IL22RA1, RAP1GAP, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, USP48, STPG1, ZBTB40, CDC42) 0.0451352275566823 68 0.0297864362128997 0.673701108386682 4184 0.280326173874649 4 4 0 -6.75847335583399 LTS-016 chr1 24791863 24791928 66 * NIPAL3 NA 0 NA 0.515 1 NA NA NA NA NA LTS-016 chr1 24791929 25586803 794875 * c(RCAN3AS, SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, NIPAL3, RUNX3) 0.0646609449736738 8 0.0208103682949492 0.606078081179397 688 0.159776546676057 4 4 0 -7.15355094460054 LTS-016 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 0.952 1 NA NA NA NA NA LTS-016 chr1 25598904 25656954 58051 * c(RSRP1, RHD) 0.0594721863178539 3 0.0151437555888007 1.23504706368709 83 0.355587716128241 20 19 1 -6.94813092006059 LTS-016 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.777 1 NA NA NA NA NA LTS-016 chr1 25666924 32128025 6461102 * c(MATN1-AS1, MIR1976, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, LINC01225, PDIK1L, PAQR7, FAM76A, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HMGN2, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, NA NA NA NA NA NA NA NA NA LTS-016 GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, PEF1, PIGV, MTFR1L, MAN1C1, SELENON, PTAFR, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, SLC30A2, LAPTM5, AUNIP, NKAIN1, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MAP3K6, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.049161640509822 94 0.0390670718326647 0.653275816688639 7243 0.243590649081968 4 4 0 -6.73763064079227 LTS-016 NA NA NA NA LTS-016 chr1 32128026 32221913 93888 * c(COL16A1, ADGRB2) 0.0437400071860052 13 0.0157488298303601 0.756066868379367 405 0.322287636905436 5 5 0 -6.75847752674064 LTS-016 chr1 32221914 32230519 8606 * c(MIR4254, ADGRB2) NA 0 NA 0.60413915529827 35 0.141618246462426 4 NA NA -5.76633436504165 LTS-016 chr1 32230520 32255968 25449 * character(0) NA 0 NA 1.291 1 NA NA NA NA NA LTS-016 chr1 32255969 32256086 118 * SPOCD1 0.473 1 NA 1.12929476804118 3 0.238034311252251 7 7 0 -5.76441077695158 LTS-016 chr1 32256087 33985353 1729267 * c(FAM229A, MIR3605, KHDRBS1, AZIN2, TMEM54, CSMD2, RNF19B, A3GALT2, DCDC2B, ZNF362, PHC2, TXLNA, AK2, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, TRIM62, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, ZSCAN20, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.438086276174982 28 0.123774692902768 1.18525361074926 2758 0.306625991706639 8 4 4 -6.7879329904247 LTS-016 chr1 33985354 34003214 17861 * CSMD2 0 1 NA 1.34662827781764 47 1.00750092357691 9 9 0 -5.76442646769926 LTS-016 chr1 34003215 35261271 1258057 * c(CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, C1orf94) 0.17671005575757 9 0.241388172866858 1.31671541291727 659 0.767647769763013 8 7 1 -6.74670295300627 LTS-016 chr1 35261272 35370688 109417 * c(SMIM12, GJA4, DLGAP3) 0.483 1 NA 1.29777629322743 141 0.48757358574861 8 8 0 -5.76476208390595 LTS-016 chr1 35370689 38677958 3307270 * c(MIR4255, MIR3659, TMEM35B, MIR5581, SF3A3, C1orf122, OSCP1, C1orf216, COL8A2, CSF3R, MANEAL, AGO3, AGO4, FHL3, NCDN, AGO1, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, TFAP2E, INPP5B, MTF1, UTP11, POU3F1, ADPRHL2, C1orf109, CDCA8, EVA1B, MAP7D1, PSMB2, DLGAP3, CLSPN, SFPQ, MEAF6, MRPS15, LOC653160, LINC01137, DNALI1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, LSM10, ZMYM4, NA NA NA NA NA NA NA NA NA LTS-016 ZMYM6, THRAP3) 0.433341228411007 41 0.0842976940343696 1.19791123308169 4287 0.31259989793872 8 4 4 -6.80257681236515 LTS-016 NA NA NA NA LTS-016 chr1 38677959 38677962 4 * LINC01343 NA 0 NA 1.31 1 NA NA NA NA NA LTS-016 chr1 38677963 40037354 1359392 * c(GJA9-MYCBP, MACF1, MYCBP, LINC01343, BMP8A, NDUFS5, RHBDL2, RRAGC, KIAA0754, SNORA55, PPIEL, AKIRIN1, PABPC4) 0.45256576672991 5 0.0284640123664953 1.399215929381 1359 0.316304383674713 10 5 5 -7.73363705570034 LTS-016 chr1 40037355 40089945 52591 * c(HEYL, PABPC4) 0.384 1 NA 1.3863811485382 31 0.218031732917802 9 9 0 -5.76447974290008 LTS-016 chr1 40089946 41013298 923353 * c(ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, HEYL, ZFP69, MYCL, HPCAL4, TRIT1, PPT1, RLF, OXCT2, SMAP2, EXO5, ZFP69B, BMP8B, NT5C1A, MFSD2A) 0.327293189917161 28 0.138090545213091 1.44579468250563 1545 0.527927164144559 9 6 3 -6.73944642612456 LTS-016 chr1 41013299 43886718 2873420 * c(LOC100129924, NFYC-AS1, SLFNL1-AS1, PPIH, EBNA1BP2, MED8, ERMAP, ZNF684, TMEM125, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, RIMKLA, GUCA2A, GUCA2B, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, NFYC, YBX1, ZNF691, HIVEP3, P3H1, ELOVL1, SLC2A1, TIE1, CCDC30, C1orf50, PPCS, ZMYND12, KCNQ4, RIMS3, CDC20) 0.387971424892111 53 0.120653313510064 1.51018455411013 2872 0.420184480369361 10 6 4 -6.73972993643155 LTS-016 chr1 43886719 43886834 116 * SZT2 NA 0 NA 1.927 1 NA NA NA NA NA LTS-016 chr1 43886835 44088348 201514 * c(SZT2, PTPRF, HYI) 0.358553580789537 6 0.056158406909978 1.72725570415387 586 0.368633812394338 11 7 4 -6.7390485147394 LTS-016 chr1 44088349 46598273 2509925 * c(KDM4A-AS1, MIR5584, AKR1A1, TESK2, KIF2C, TOE1, PLK3, CCDC163, KLF17, CCDC24, BTBD19, CCDC17, DPH2, MAST2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, IPP, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, ST3GAL3, SLC6A9, RPS15AP10, UROD, ERI3, TMEM53, HECTD3, HPDL, PIK3R3, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A) 0.389585539690335 72 0.0624906737955681 1.48846257314803 3256 0.358980723615827 10 6 4 -6.75192440233551 LTS-016 chr1 46598274 46733273 135000 * c(TSPAN1, LURAP1, POMGNT1, RAD54L, PIK3R3) 0 1 NA 1.56642502222385 248 0.35786005227441 10 10 0 -5.76448890781899 LTS-016 chr1 46733274 47133795 400522 * c(MKNK1-AS1, LRRC41, DMBX1, KNCN, MOB3C, FAAH, NSUN4, ATPAF1, FAAHP1, UQCRH, RAD54L, MKNK1, EFCAB14) 0.398981922180558 3 0.0144683562761405 1.54336008374957 733 0.401939998144882 12 7 5 -6.78490030990374 LTS-016 chr1 47133796 50884253 3750458 * c(EFCAB14-AS1, LINC00853, PDZK1IP1, CYP4A11, CYP4B1, CYP4Z2P, ELAVL4, CYP4Z1, SLC5A9, FOXE3, FOXD2, CYP4X1, CYP4A22, TEX38, TRABD2B, SKINT1L, CMPK1, SPATA6, DMRTA2, ATPAF1, STIL, TAL1, BEND5, FOXD2-AS1, AGBL4, EFCAB14) 0.270802625870392 32 0.137048080655259 1.80627597655957 1727 0.927922125604268 12 9 3 -6.73868728820731 LTS-016 chr1 50884254 50884392 139 * DMRTA2 NA 0 NA 1.131 1 NA NA NA NA NA LTS-016 chr1 50884393 51702183 817791 * c(CDKN2C, FAF1, RNF11, C1orf185, DMRTA2) 0.29756846641506 4 0.200594740708723 1.39780498616834 241 0.434658525293084 9 6 3 -6.75870709163657 LTS-016 chr1 51702184 51702190 7 * RNF11 NA 0 NA 2.291 1 NA NA NA NA NA LTS-016 chr1 51702191 54360280 2658090 * c(MIR761, LOC100507564, KTI12, OSBPL9, PODN, CPT2, GLIS1, SLC25A3P1, DIO1, CC2D1B, EPS15, TTC39A, ZCCHC11, RNF11, GPX7, FAM159A, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, YIPF1, C1orf123, ECHDC2, NDC1, RAB3B, SCP2, DMRTB1, SLC1A7, COA7, LRP8, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.246874988725404 11 0.146707872999372 1.7392248996101 3414 0.602874743824199 12 9 3 -6.75262457541502 LTS-016 chr1 54360281 54619142 258862 * c(MIR4781, LRRC42, TCEANC2, DIO1, CDCP2, LDLRAD1, HSPB11, TMEM59) 0.246454435791955 2 0.318905158315133 1.153180388373 402 0.520538132246086 8 6 2 -6.73857115683813 LTS-016 chr1 54619143 54704563 85421 * c(SSBP3, MRPL37, CYB5RL) 0.43 1 NA 1.21900172851273 155 0.290457661206411 8 8 0 -5.7648503244668 LTS-016 chr1 54704564 59121036 4416473 * c(LOC100507634, MROH7-TTC4, MIR4422, MYSM1, OMA1, DAB1, LEXM, DHCR24, C1orf168, TMEM61, USP24, SSBP3, PCSK9, PARS2, ACOT11, FAM151A, MROH7, TACSTD2, TTC22, PRKAA2, TTC4, C8A, C8B, BSND, PLPP3) 0.370972615688429 68 0.146271102047252 1.24878525769675 2256 0.535700530079831 8 5 3 -6.73344939932265 LTS-016 chr1 59121037 59122871 1835 * MYSM1 0.416 1 NA 1.16066499615528 41 0.471456360652818 7 7 0 -5.7644225949975 LTS-016 chr1 59122872 66096234 6973363 * c(LINC01135, MIR3671, MIR4794, MIR4711, PATJ, MYSM1, C1orf87, UBE2U, CYP2J2, KANK4, LINC00466, AK4, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, JUN, LEPR, MIR101-1, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, LEPROT, RAVER2, FGGY, CACHD1, HSD52, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.4306637885496 75 0.0960138465990127 1.20818356511055 3404 0.384699378092934 8 4 4 -6.78607335719241 LTS-016 chr1 66096235 66098826 2592 * LEPR NA 0 NA 1.051 1 NA NA NA NA NA LTS-016 chr1 66098827 70144056 4045230 * c(INSL5, GNG12-AS1, MIR1262, MIR3117, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, LEPR, C1orf141, PDE4B, DEPDC1, GNG12, LRRC7, MIER1, RPE65, WDR78, WLS, SGIP1, DIRAS3) 0.41933801590653 33 0.114653686390933 1.12737094135868 2046 0.354634073251423 7 4 3 -6.74923934737957 LTS-016 chr1 70144057 70340105 196049 * LRRC7 0 1 NA 1.1709699107815 57 0.827611273364192 7 7 0 -5.76500804640395 LTS-016 chr1 70340106 70542025 201920 * c(PIN1P1, LRRC7) 0.472 1 NA 1.2148722698143 136 0.244334343148543 8 8 0 -5.76627424165194 LTS-016 chr1 70542026 70555385 13360 * LRRC7 NA 0 NA 0.761 1 NA NA NA NA NA LTS-016 chr1 70555386 89322926 18767541 * c(ZRANB2-AS1, PIGK, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, GTF2B, LINC01140, ACADM, CYR61, MIGA1, UOX, MIR186, LHX8, LINC01555, MSH4, NA NA NA NA NA NA NA NA NA LTS-016 TNNI3K, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, LRRC40, PRKACB, PKN2, PTGER3, PTGFR, ODF2L, LRRC7, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, LMO4, FPGT, FUBP1, BCL10, NEXN, SRSF11, SELENOF, ZRANB2, CLCA3P, CLCA2, HS2ST1) 0.32169913380852 101 0.10341580016019 0.901577208895178 7210 0.271411538660704 6 4 2 -7.23290232421689 LTS-016 NA NA NA NA LTS-016 chr1 89322927 94041762 4718836 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.34383092078069 37 0.0870024075466818 0.83505568276992 3392 0.213630718703258 5 3 2 -6.99420891232804 LTS-016 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.037 1 NA NA NA NA NA LTS-016 chr1 94047868 97279692 3231825 * c(MIR760, LOC100129046, TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, FLJ31662, PTBP2, ABCD3, LOC729970, BCAR3, ARHGAP29) 0.35076937533483 23 0.0586282587774251 0.931439175221888 1385 0.250229941879765 6 4 2 -6.76500477095941 LTS-016 chr1 97279693 97280406 714 * PTBP2 NA 0 NA 0.845535680212039 17 0.157981826021037 5 NA NA -5.76444724544066 LTS-016 chr1 97280407 97543332 262926 * c(DPYD, PTBP2) NA 0 NA 1.137 1 NA NA NA NA NA LTS-016 chr1 97543333 97543752 420 * DPYD 0.454 1 NA 1.26639824838362 9 0.463429096818249 8 8 0 -5.76441028215242 LTS-016 chr1 97543753 108212041 10668289 * c(LINC01349, LOC100129138, LOC100129620, MIR2682, DPYD-AS1, VAV3, OLFM3, LRRC39, COL11A1, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, NTNG1, SLC35A3, AMY2A, AMY2B, FRRS1, MIR137HG, MIR137, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, MFSD14A, ACTG1P4, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.409733143039446 37 0.126177594228473 1.12825239120485 2852 0.286123761607359 7 4 3 -6.77053697552488 LTS-016 chr1 108212042 108313257 101216 * VAV3 0 1 NA 1.12968525042838 63 0.680620223308752 7 7 0 -5.76448017539327 LTS-016 chr1 108313258 109377158 1063901 * c(VAV3-AS1, VAV3, HENMT1, NBPF4, FNDC7, AKNAD1, FAM102B, SLC25A24, PRPF38B, NBPF6, STXBP3) 0.121888215975138 9 0.217265454635056 1.17172584978373 686 0.748586706565868 8 7 1 -6.74474047147285 LTS-016 chr1 109377159 109394978 17820 * AKNAD1 0.464 1 NA 1.14555622940748 42 0.277434782701682 7 7 0 -5.76460096386753 LTS-016 chr1 109394979 109656735 261757 * c(C1orf194, WDR47, CLCC1, AKNAD1, GPSM2, TMEM167B, KIAA1324, SPATA42, SCARNA2, TAF13) 0.428852781153427 3 0.0374699879903904 1.13332083998771 428 0.736023477680626 8 4 4 -6.82270074265546 LTS-016 chr1 109656736 109656780 45 * KIAA1324 NA 0 NA 1.461 1 NA NA NA NA NA LTS-016 chr1 109656781 110088447 431667 * c(ATXN7L2, CELSR2, SYPL2, CYB561D1, MYBPHL, PSMA5, AMIGO1, KIAA1324, SORT1, SARS, GPR61, PSRC1) 0.440696397255226 15 0.123815415610727 1.2480142422384 1292 0.350650000937663 8 4 4 -6.75979607118129 LTS-016 chr1 110088448 110088450 3 * GPR61 NA 0 NA 1.072 1 NA NA NA NA NA LTS-016 chr1 110088451 118537074 8448624 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, CHI3L2, DDX20, MAB21L3, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, CHIAP2, DENND2C, UBL4B, SPAG17, HIPK1, AKR7A2P1, ALX3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, IGSF3, PPM1J, KCNA2, KCNA3, KCNA10, KCNC4, NA NA NA NA NA NA NA NA NA LTS-016 KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, OLFML3, PTGFRN, RAP1A, CYMP, LOC643355, LOC643441, RBM15, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, PROK1, CASQ2, TTF2, ATP1A1-AS1, STRIP1, SLC16A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CD2, CD101, CD53, CD58, LRIG2) 0.434610476415002 164 0.0904870861710601 1.14678351503024 8515 0.356829256823232 7 4 3 -6.84823712423629 LTS-016 NA NA NA NA LTS-016 chr1 118537075 118554884 17810 * SPAG17 0 1 NA 1.16413045617661 23 0.986096608725094 7 7 0 -5.76444117696544 LTS-016 chr1 118554885 119923428 1368544 * c(WARS2, SPAG17, HAO2, TBX15) 0.280934089706336 11 0.233307210658939 1.15260967385846 335 0.771138749656465 7 5 2 -6.73885766164409 LTS-016 chr1 119923429 120311478 388050 * c(HSD3BP4, PHGDH, HMGCS2, HSD3B1, HSD3B2, HAO2, LINC00622, ZNF697) 0.499 1 NA 1.15776584982802 395 0.288905934656713 7 7 0 -5.77074173221897 LTS-016 chr1 120311479 120927095 615617 * c(ADAM30, FCGR1B, HMGCS2, HIST2H2BA, NBPF7, NOTCH2, FAM72B, REG4) 0.32394798622155 18 0.0896209337415421 1.12260674648117 630 1.00688309741504 9 6 3 -6.76802224716151 LTS-016 chr1 120927096 121313547 386452 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 1.02734006835538 79 0.299817738099658 7 NA NA -5.77769756732451 LTS-016 chr1 143912360 144013853 101494 * FAM72D 0.325 1 NA 1.08688769548906 5 0.430112427162945 7 7 0 -5.76448928113708 LTS-016 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.404324623888051 60 0.0911134885547149 1.11962935934289 522 0.390756628901259 7 4 3 -6.73417194535903 LTS-016 chr1 145075855 145103928 28074 * c(NBPF20, SEC22B, PDE4DIP) 0.145 1 NA 1.29188044054993 14 0.213308951502765 8 8 0 -5.76476925273968 LTS-016 chr1 145103929 145285310 181382 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B) 0.282021541827816 31 0.0900225658687387 1.08893066421326 219 0.973812753368221 7 5 2 -6.75216277203207 LTS-016 chr1 145285311 145535921 250611 * c(NBPF10, NBPF20, TXNIP, LIX1L, HFE2, ANKRD34A, NOTCH2NL, POLR3GL, ITGA10, PEX11B, RBM8A) 0.487 1 NA 1.1339522131247 565 0.257144211661301 7 7 0 -5.76605330186845 LTS-016 chr1 145535922 151397554 5861633 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, MTMR11, MLLT11, CD160, VPS45, GABPB2, CIART, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, NA NA NA NA NA NA NA NA NA LTS-016 ACP6, GPR89B, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, ZNF687, PRUNE1, RFX5, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, VPS72, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, ITGA10, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A) 0.436161999336317 82 0.094798624902202 1.15686334245443 5755 0.322118242223161 7 4 3 -6.86529478312722 LTS-016 NA NA NA NA LTS-016 chr1 151397555 151400246 2692 * POGZ NA 0 NA 1.434 1 NA NA NA NA NA LTS-016 chr1 151400247 151735545 335299 * c(CELF3, POGZ, RIIAD1, OAZ3, CGN, MRPL9, MIR554, TUFT1, SNX27) 0.417904148246114 15 0.167533308699523 1.23232031949967 594 0.325647819974931 8 4 4 -6.73376645839389 LTS-016 chr1 151735546 151826168 90623 * c(LOC100132111, C2CD4D, TDRKH, THEM5, LINGO4, OAZ3, RORC, MRPL9) 0 1 NA 1.2256787509443 381 0.332952530937128 8 8 0 -5.76463593915873 LTS-016 chr1 151826169 153427569 1601401 * c(C1orf68, PGLYRP3, THEM4, TCHHL1, RPTN, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, THEM5, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A8, S100A9, S100A10, S100A11, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, TCHH, NA NA NA NA NA NA NA NA NA LTS-016 LCE3D) 0.437587639451588 69 0.0805639833515557 1.28119839953739 1682 0.749652037137819 8 4 4 -6.78280264263689 LTS-016 NA NA NA NA LTS-016 chr1 153427570 153509890 82321 * c(S100A5, S100A6, S100A7) 0.481 1 NA 1.07948463437906 33 0.260374013476651 7 7 0 -5.76477374209368 LTS-016 chr1 153509891 156181770 2671880 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, RXFP4, IL6R, ILF2, KCNN3, C1orf189, LMNA, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, GON4L, MSTO1, YY1AP1, UBE2Q1, NA NA NA NA NA NA NA NA NA LTS-016 ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, RAB13, RIT1, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A13, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, INTS3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, DAP3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.453700560061355 88 0.0586184809267956 1.1844954203907 7154 0.286802086325499 8 4 4 -7.04977256670726 LTS-016 NA NA NA NA LTS-016 chr1 156181771 156202173 20403 * c(PMF1-BGLAP, PMF1, SLC25A44) 0.415 1 NA 1.20880807941593 33 0.253813531381054 8 8 0 -5.76464712911526 LTS-016 chr1 156202174 156532908 330735 * c(PMF1-BGLAP, C1orf61, PMF1, GLMP, TSACC, IQGAP3, SMG5, VHLL, MIR9-1, MEF2D, RHBG, BGLAP, CCT3, PAQR6, TMEM79) 0.252299377885338 9 0.239771650627101 1.20948319155517 893 0.484667638608388 8 6 2 -6.73528480963491 LTS-016 chr1 156532909 156563461 30553 * c(IQGAP3, NAXE, TTC24) 0.496 1 NA 1.16039981681752 123 0.266982347550867 7 7 0 -5.76505145893634 LTS-016 chr1 156563462 160393905 3830444 * c(CADM3-AS1, LINC01133, NES, FCRL1, FCRL3, OR10J5, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, LRRC71, PYHIN1, ETV3, FCER1A, NCSTN, ACKR1, CFAP45, OR10J1, C1orf204, HDGF, APCS, IFI16, OR10R2, FCRL6, CYCSP52, INSRR, PEAR1, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, MNDA, ETV3L, OR10J3, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NTRK1, DCAF8, RRNAD1, GPATCH4, DUSP23, KIRREL, NA NA NA NA NA NA NA NA NA LTS-016 PRCC, SLAMF8, VANGL2, IGSF9, CADM3, PEX19, HAPLN2, BCAN, LOC646268, SPTA1, MIR765, FCRL2, MRPL24, OR6N2, OR6K2, ISG20L2, FCRL5, FCRL4, TAGLN2, CASQ1, PEA15, SLAMF9, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, PIGM, IGSF8, AIM2, ARHGEF11) 0.417621283781476 61 0.130008900493967 1.21061256335895 5898 0.389483931627304 8 4 4 -6.7506599476859 LTS-016 NA NA NA NA LTS-016 chr1 160393906 160394995 1090 * VANGL2 0 1 NA 1.32192574611471 9 1.15104474283149 8 8 0 -5.76441158008955 LTS-016 chr1 160394996 160517559 122564 * c(SLAMF6, VANGL2, CD84) 0.20967422157125 9 0.239058279737622 1.25155665195215 277 0.741659687091106 10 8 2 -6.73921460223638 LTS-016 chr1 160517560 160517588 29 * CD84 NA 0 NA 0.907072199545276 2 0.369816846560564 6 NA NA -5.76441046674523 LTS-016 chr1 160517589 160582248 64660 * c(SLAMF1, CD84) 0.461 1 NA 1.04460253452906 119 0.231435565903506 7 7 0 -5.76661534995096 LTS-016 chr1 160582249 167095691 6513443 * c(MIR921, TSTD1, MIR3658, LOC100505795, MIR4654, MIR5187, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, KLHDC9, UHMK1, FCRLB, ITLN2, FAM78B, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, ATF6, ARHGAP30, CFAP126, OLFML2B, USP21, C1orf111, HSPA6, HSPA7, APOA2, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, LY9, MGST3, MPZ, LRRC52, LOC440700, NDUFS2, NIT1, DDR2, F11R, PBX1, HSD17B7, UFC1, CD244, PFDN2, TMCO1, NA NA NA NA NA NA NA NA NA LTS-016 PPOX, ITLN1, POGK, SLAMF7, RGS4, RXRG, SDHC, RPL31P11, SLAMF1, PCP4L1, UAP1, MIR556, UCK2, USF1, NECTIN4, NUF2, TOMM40L, FCRLA, RGS5, MAEL, B4GALT3, FCGR2C, DEDD, DUSP27, ADAMTS4, CD48, NOS1AP, NR1I3) 0.439197428014046 124 0.0747130128597746 1.15301628750372 4935 0.338751761906533 7 4 3 -6.91056933902496 LTS-016 NA NA NA NA LTS-016 chr1 167095692 167339486 243795 * c(POU2F1, DUSP27) NA 0 NA 1.04691031964242 99 0.247011003788452 7 NA NA -5.77113215405237 LTS-016 chr1 167339487 167341091 1605 * POU2F1 NA 0 NA 0.773 1 NA NA NA NA NA LTS-016 chr1 167341092 167367193 26102 * POU2F1 0.312 1 NA 0.845916219163602 41 0.18679679842663 5 5 0 -5.76540058611623 LTS-016 chr1 167367194 169842821 2475628 * c(LOC100505918, SLC19A2, DPT, F5, GPR161, MPC2, TIPRL, NME7, SFT2D2, ATP1B1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, CCDC181, XCL1, SELE, SELL, SELP, XCL2, MIR557, LINC00626, ANKRD36BP1, BLZF1, CREG1, MPZL1, TBX19, CD247, RCSD1, METTL18) 0.309404817019189 24 0.10493910414955 0.849519171376692 2331 0.286034105057915 6 4 2 -7.03302050404187 LTS-016 chr1 169842822 170043851 201030 * c(KIFAP3, SCYL3) 0.399 1 NA 0.807566729817988 119 0.224398744036837 5 5 0 -5.76441095684232 LTS-016 chr1 170043852 170120659 76808 * c(MIR3119-1, MIR3119-2, METTL11B, KIFAP3) NA 0 NA 0.89335350975104 15 0.150147863629094 6 NA NA -5.77363656511726 LTS-016 chr1 170120660 170129704 9045 * METTL11B NA 0 NA 1.289 1 NA NA NA NA NA LTS-016 chr1 170129705 171621818 1492114 * c(MIR1295A, MIR1295B, METTL11B, PRRC2C, FMO1, FMO2, FMO3, FMO4, LINC01142, FMO6P, MYOC, PRRX1, TOP1P1, MROH9, GORAB) 0.466927436163387 5 0.0229673681557117 1.14150723048174 1073 0.315627788363609 8 4 4 -8.95119128217378 LTS-016 chr1 171621819 174982455 3360637 * c(MIR3120, LOC100506023, GAS5-AS1, DNM3OS, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, MYOC, SUCO, METTL13, PIGC, DARS2, GAS5, SNORD74, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, VAMP4, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.461245293063156 27 0.0359851979699219 1.02534022881461 2311 0.296188911144916 6 3 3 -7.71776708581811 LTS-016 chr1 174982456 181548341 6565886 * c(GM140, RASAL2-AS1, MIR3121, LHX4-AS1, MIR4424, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, C1orf220, ASTN1, IER5, RALGPS2, MIR488, QSOX1, KIAA1614, BRINP2, PAPPA2, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, TNR, LOC730102, CACNA1E, NPHS2, TEX35, ACBD6, SEC16B, LHX4, ANGPTL1, XPR1, RASAL2, KIAA0040, CEP350, FAM20B) 0.443429704580117 97 0.0874146822636663 1.11636589540161 4639 0.323401804599369 7 4 3 -6.84371303872752 LTS-016 chr1 181548342 181684490 136149 * CACNA1E 0 1 NA 1.28056513141398 21 1.28993729637197 8 8 0 -5.76443465781583 LTS-016 chr1 181684491 181775001 90511 * CACNA1E 0.31488663986502 10 0.223950292103702 1.23044417761355 400 0.691889029807287 7 5 2 -6.73772983531479 LTS-016 chr1 181775002 182024853 249852 * c(ZNF648, CACNA1E) 0.442 1 NA 1.11827893483603 75 0.249492774092406 7 7 0 -5.76481500762112 LTS-016 chr1 182024854 183520033 1495180 * c(ZNF648, TEDDM1, DHX9, NMNAT2, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, RGS16, RNASEL, NPL, SHCBP1L, RGS8, SMG7) 0.428081141410098 21 0.141200313637855 1.12352503142558 1507 0.415723378320542 7 4 3 -6.74879035359579 LTS-016 chr1 183520034 186051952 2531919 * c(GS1-279B7.1, MIR548F1, ARPC5, IVNS1ABP, TSEN15, FAM129A, COLGALT2, RGL1, APOBEC4, NCF2, SWT1, RNF2, EDEM3, C1orf21, TRMT1L, HMCN1, SMG7) 0.454264602438694 49 0.073134980277129 1.039360569515 1981 0.267658077483651 6 3 3 -7.05187145437606 LTS-016 chr1 186051953 186159860 107908 * c(MIR548F1, HMCN1) NA 0 NA 1.05480260240748 282 0.223115129774399 7 NA NA -5.76709804879237 LTS-016 chr1 186159861 186265948 106088 * c(MIR548F1, RNU6-72P, PRG4, HMCN1) 0.248 1 NA 2.18947486324494 5 1.93631978247396 14 14 0 -5.76441808646986 LTS-016 chr1 186265949 187610828 1344880 * c(MIR548F1, RNU6-72P, PRG4, OCLM, PDC, PLA2G4A, C1orf27, PTGS2, TPR) 0.335197469414336 3 0.068369096332578 1.86191542710395 689 0.437027808156146 12 8 4 -6.73397196089432 LTS-016 chr1 187610829 200828032 13217204 * c(MIR181A1HG, MIR1278, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, UCHL5, LINC00862, LHX9, PTPRC, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, CFHR5, DDX59, B3GALT2, KIF14) 0.29731911919645 51 0.116681439961 1.47136703376148 3453 0.488532557887905 10 7 3 -6.82466426981253 LTS-016 chr1 200828033 200828036 4 * CAMSAP2 NA 0 NA 1.704 1 NA NA NA NA NA LTS-016 chr1 200828037 202288003 1459967 * c(MIR1231, MIR5191, TIMM17A, ARL8A, CSRP1, PTPRVP, SHISA4, ELF3, KIF21B, CAMSAP2, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, PTPN7, LGR6, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1, GPR37L1) 0.31383314574671 53 0.0768753821659704 1.71412402553396 2746 0.524752266694458 10 7 3 -6.76900731179779 LTS-016 chr1 202288004 203839643 1551640 * c(ZBED6, PCAT6, KDM5B, CHI3L1, CHIT1, SYT2, ADORA1, LOC148709, FMOD, OPTC, UBE2T, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, LAX1, PRELP, RABIF, KLHL12, LGR6, MGAT4EP, SNRPE, SNORA77, LINC01136, BTG2, LINC00260, PPFIA4, TMEM183A, ZC3H11A) 0.319979055847086 80 0.0560722169408186 1.56999713588372 2531 0.456609365747749 10 7 3 -6.76139723169529 LTS-016 chr1 203839644 204006114 166471 * c(LINC00303, SNRPE) NA 0 NA 1.974 1 NA NA NA NA NA LTS-016 chr1 204006115 205568317 1562203 * c(LRRN2, LINC00628, GOLT1A, MFSD4A, ELK4, PLEKHA6, NFASC, DSTYK, LINC00303, LEMD1-AS1, LOC284578, KISS1, TMEM81, MDM4, MIR135B, CDK18, PIK3C2B, KLHDC8A, ETNK2, RBBP5, REN, CNTN2, NUAK2, PPP1R15B, LEMD1, SOX13, TMCC2) 0.290371051117507 55 0.091463657664674 1.69737814335966 2425 0.576350233280781 11 8 3 -6.73871826685279 LTS-016 chr1 205568318 208391254 2822937 * c(IL24, SLC26A9, CR1, CR1L, CR2, LOC148696, MFSD4A, PM20D1, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, LOC284581, IL19, IL10, MIR29C, CD46, C1orf186, IL20, PFKFB2, PIGR, PLXNA2, AVPR1B, YOD1, NUCKS1, SRGAP2C, C4BPA, C4BPB, FAM72A, C1orf116, RASSF5, FCAMR, DYRK3, SLC45A3, RAB29, FCMR, MAPKAPK2, CD34, IKBKE) 0.297117540475501 83 0.102183049235108 1.56118181012079 3774 0.528304486069848 10 7 3 -6.7401146868329 LTS-016 chr1 208391255 208391489 235 * PLXNA2 NA 0 NA 1.44108371203376 5 0.0366428710665526 9 NA NA -5.76449481626592 LTS-016 chr1 209346454 209796463 450010 * c(LAMB3, MIR205, CAMK1G, MIR205HG) 0 1 NA 0.601868208345776 121 0.379176879286071 4 4 0 -5.77966281614419 LTS-016 chr1 209796464 214507595 4711132 * c(MIR4260, MIR3122, LINC00538, TATDN3, C1orf74, SPATA45, FAM71A, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, LAMB3, ATF3, NEK2, G0S2, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, LPGAT1) 0.0636893521039287 66 0.0495691083589013 0.571661820626321 3014 0.227227366378408 3 3 0 -7.36669351009687 LTS-016 chr1 214507596 219706428 5198833 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, SMYD2, PTPN14, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.0436959686953359 15 0.0317352140299039 0.613167934340857 1902 0.207356390981022 4 4 0 -7.10563397495485 LTS-016 chr1 219706429 219783279 76851 * character(0) 0.448 1 NA 0.760436457153216 15 0.407252255979018 5 5 0 -5.76539577939048 LTS-016 chr1 219783280 220102001 318722 * c(RNU5F-1, SLC30A10) NA 0 NA 0.636932223981725 77 0.190804271422746 4 NA NA -5.77033845845176 LTS-016 chr1 220102002 220141824 39823 * c(RNU5F-1, SLC30A10) NA 0 NA 1.072 1 NA NA NA NA NA LTS-016 chr1 220141825 227843238 7701414 * c(MIR320B2, MIR4742, BPNT1, LEFTY1, DUSP10, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, EPRS, FBXO28, RAB3GAP2, RNU5F-1, LIN9, CNIH4, PYCR2, H3F3A, HLX, ZNF678, ITPKB, MIA3, STUM, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, H3F3AP4, NVL, MARC2, SUSD4, IARS2, ENAH, PSEN2, COQ8A, ACBD3, MARC1, AIDA, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, NA NA NA NA NA NA NA NA NA LTS-016 MIXL1, CDC42BPA, DISP1, DEGS1, TAF1A, TMEM63A) 0.327550794429228 145 0.0930793069134001 1.54910957826151 5808 0.502427342189333 10 7 3 -6.75956316288107 LTS-016 NA NA NA NA LTS-016 chr1 227843239 227843446 208 * ZNF678 NA 0 NA 2.033 1 NA NA NA NA NA LTS-016 chr1 227843447 228613110 769664 * c(NA, MIR3620, MIR5008, SNAP47, MRPL55, IBA57, GUK1, ZNF678, PRSS38, ARF1, ZNF847P, TRIM17, GJC2, C1orf145, JMJD4, WNT9A, C1orf35, TRIM11, HIST3H3, OBSCN, WNT3A) 0.339443739512519 51 0.0760709782077909 1.71667511199443 1788 0.497476183744205 12 8 4 -6.74326318945417 LTS-016 chr1 228613111 228645015 31905 * character(0) NA 0 NA 1.419 1 NA NA NA NA NA LTS-016 chr1 228645016 230417664 1772649 * c(MIR4666A, SPHAR, CCSAP, HIST3H2BB, RNF187, ABCB10, GALNT2, TAF5L, NUP133, DUSP5P1, ACTA1, RHOU, RAB4A, HIST3H2A, URB2) 0.324286930539543 37 0.0685571154445553 1.55355562784899 1125 0.536661349302806 10 7 3 -6.76700746739774 LTS-016 chr1 230417665 230461058 43394 * c(GALNT2, PGBD5) 0 1 NA 1.95197941552032 53 0.741346112187251 13 13 0 -5.76443183678264 LTS-016 chr1 230461059 231408209 947151 * c(MIR1182, CAPN9, C1orf131, LOC149373, AGT, COG2, FAM89A, TRIM67, ARV1, TTC13, PGBD5, GNPAT, C1orf198) 0.199177299625723 18 0.173803406707137 1.62265899030962 947 0.695851236619359 11 9 2 -6.73587246246456 LTS-016 chr1 231408210 231499559 91350 * c(EXOC8, EGLN1, SPRTN, GNPAT) 0.475 1 NA 1.57670310188098 245 0.368384714020894 10 10 0 -5.76453666424472 LTS-016 chr1 231499560 233431215 1931656 * c(LINC00582, TSNAX-DISC1, DISC2, DISC1, EGLN1, MAP10, SIPA1L2, SNRPD2P2, TSNAX, PCNX2, NTPCR) 0.304477802061292 18 0.123732422663992 1.55569812258085 1150 0.432907270993973 10 7 3 -6.7336114798525 LTS-016 chr1 233431216 233431281 66 * PCNX2 NA 0 NA 0.711 1 NA NA NA NA NA LTS-016 chr1 233431282 236899115 3467834 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, PCNX2, MLK4, ACTN2, GGPS1, TOMM20) 0.371928644271447 25 0.0918687832363819 1.25575219014338 2467 0.331320583056325 8 5 3 -6.73364542654703 LTS-016 chr1 236899116 249211619 12312504 * c(AKT3, LOC100130331, MIR3123, MIR3124, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, PGBD2, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, NA NA NA NA NA NA NA NA NA LTS-016 OR2W3, OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, ZNF692, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, LYPD8, SMYD3, LINC01347, ZNF124, ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170 NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ) 0.353313821442659 131 0.131696744571868 1.36359066363736 6435 0.647321549336966 9 6 3 -6.75261692261862 LTS-016 NA NA NA NA LTS-016 chr1 249211620 249214134 2515 * PGBD2 NA 0 NA 1.18661377286861 47 0.22817136150877 8 NA NA -5.76449414351195 LTS-016 chr2 38824 40583 1760 * FAM110C 0.316 1 NA 0.852203740366118 33 0.164969837693091 5 5 0 -5.76452483663315 LTS-016 chr2 40584 668533 627950 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0.423 1 NA 0.82719110900163 271 0.186623355105321 5 5 0 -5.77094741496171 LTS-016 chr2 668534 3392584 2724051 * c(TMEM18, MYT1L, LINC01115, TRAPPC12, SNTG2, TPO, TSSC1, MYT1L-AS1, PXDN) 0.289618943158824 14 0.135174957853773 0.987718155112099 819 0.40524916563009 6 4 2 -6.8343978607637 LTS-016 chr2 3392585 3393455 871 * TRAPPC12 NA 0 NA 0.453 1 NA NA NA NA NA LTS-016 chr2 3393456 26616629 23223174 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-016 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, COLEC11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, SELENOI, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.325486702229104 176 0.0950136278673722 0.897202502738775 10383 0.29663943528005 6 4 2 -7.32174302521014 LTS-016 NA NA NA NA LTS-016 chr2 26616630 27534543 917914 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.292869985535366 16 0.145931362290633 0.981224921618095 2078 0.281012219286825 6 4 2 -6.80654858866733 LTS-016 chr2 27534544 30865405 3330862 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, MPV17, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.334696388646238 83 0.0970171361847385 0.888126950828268 3630 0.274141949002517 6 4 2 -6.87574996397216 LTS-016 chr2 30865406 30867086 1681 * LCLAT1 0.0938120122788815 2 0.14142135623731 0.448771815986368 42 0.454440542575542 2 2 0 -6.73362517780034 LTS-016 chr2 30867087 31756632 889546 * c(LCLAT1, EHD3, CAPN14, SRD5A2, XDH, GALNT14, CAPN13) 0.240454736948582 18 0.144362753420553 0.998985103923469 686 0.640135848421952 5 4 1 -6.79901413176553 LTS-016 chr2 31756633 31758673 2041 * SRD5A2 NA 0 NA 0.894 1 NA NA NA NA NA LTS-016 chr2 31758674 70890887 39132214 * c(SNORA36C, SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LOC100133985, LINC01119, DBIL5P2, ARHGEF33, LOC100271832, LOC100288911, MIR3126, MIR3682, CEBPZOS, MIR4765, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, RMDN2-AS1, CEBPZ, C1D, CCT4, CDC42EP3, B3GNT2, SIX2, PROKR1, GPR75, SNRNP27, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, ADD2, PPP1R21, C2orf73, CLHC1, PLEKHH2, GALM, TMEM178A, AHSA2, NA NA NA NA NA NA NA NA NA LTS-016 COMMD1, PUS10, LINC00309, MYADML, RMDN2, ASPRV1, CYP1B1, OXER1, KCNG3, GKN2, APLF, TMEM17, SPRED2, EPAS1, EFEMP1, AAK1, CEP68, PSME4, EHBP1, RHOQ, HAAO, PRKD3, FSHR, GPATCH11, RASGRP3, QPCT, CNRIP1, FAM98A, GFPT1, NFU1, ERLEC1, BMP10, EML4, LINC00486, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, LGALSL, MSH6, ANXA4, FOXN2, LOC339803, C2orf74, LOC339807, CDKL4, PRORSD1P, LOC375196, LOC388942, TMEM247, LINC01118, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TSPYL6, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, LTBP1, MIR216A, MIR217, EPCAM, MXD1, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, PCBP1, WDPCP, MEMO1, ASB3, CRIM1, PCYOX1, VPS54, DYNC2LI1, PEX13, VIT, PIGF, BCL11A, PLEK, ETAA1, HEATR5B, AFTPH, PPM1B, C2orf42, FANCL, SRBD1, PPP3R1, FBXO48, NDUFAF7, TTC27, SLC30A6, CCDC88A, PRKCE, EIF2AK2, GKN1, KCNK12, PNO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, BIRC6, MTA3, NLRC4, RAB1A, REL, RPS27A, THADA, ATL2, ABCG5, ABCG8, SRSF7, GMCL1, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SLC8A1, SNRPG, SOS1, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, MIR558, MIR559, TGFA, TIA1, LOC728730, C1GALT1C1L, MORN2, MEIS1-AS3, UGP2, VRK2, XPO1, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, FAM161A, ANTXR1, YIPF4, KIAA1841, DPY30, FAM136A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MAP4K3, PNPT1, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, CRIPT, PREPL, FEZ2, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.320424464931066 244 0.10223926389388 0.871804779586848 18645 0.349151062845699 5 3 2 -7.99587575744119 LTS-016 NA NA NA NA LTS-016 chr2 70890888 73492824 2601937 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.307439809891937 56 0.119057549109664 0.960621214250244 2537 0.325748935937214 6 4 2 -6.78502440920965 LTS-016 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.698 1 NA NA NA NA NA LTS-016 chr2 73493010 87085504 13592495 * c(SNAR-H, DCTN1-AS1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, NA NA NA NA NA NA NA NA NA LTS-016 TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.332650599785022 99 0.0909925377682097 0.893777940048485 6999 0.243128878531103 6 4 2 -7.29940382131596 LTS-016 NA NA NA NA LTS-016 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.595 1 NA NA NA NA NA LTS-016 chr2 87092741 87408705 315965 * c(ANAPC1P1, LOC285074, RMND5A) 0.358 1 NA 0.574212400883537 82 0.290393404831113 3 3 0 -5.79553547756643 LTS-016 chr2 87408706 87410081 1376 * RMND5A NA 0 NA 0.156 1 NA NA NA NA NA LTS-016 chr2 87410082 87424311 14230 * RMND5A NA 0 NA 0.298396930785915 42 0.309875207169891 2 NA NA -5.76772059489764 LTS-016 chr2 87424312 88055929 631618 * c(CYTOR, RMND5A) 0.401591581828331 2 0.0289913780286484 0.896405726062892 52 0.389923415054602 5 3 2 -6.8057862507865 LTS-016 chr2 88055930 88056000 71 * character(0) 0.373 1 NA 1.50329962248196 3 0.317647603485372 10 10 0 -5.76441050861881 LTS-016 chr2 88056001 88889907 833907 * c(MIR4780, SMYD1, TEX37, FABP1, FOXI3, KRCC1, THNSL2, EIF2AK3) 0.125547315686025 9 0.155168009303178 0.952710553835009 437 0.678775260070202 7 6 1 -6.79360434210953 LTS-016 chr2 88889908 88895123 5216 * EIF2AK3 0.37 1 NA 0.863348528250847 19 0.153684342706023 5 5 0 -5.7650115124145 LTS-016 chr2 88895124 91809385 2914262 * c(MIR4436A, RPIA, ANKRD36BP2, LOC654342, EIF2AK3) 0.341657773531132 15 0.104753088373611 0.999454448979842 418 0.970328696517168 6 4 2 -6.73682514038901 LTS-016 chr2 91809386 91944151 134766 * LOC654342 0.42312353157087 18 0.0722658490656304 1.35578298893006 75 0.891918324342144 8 4 4 -6.74220540659636 LTS-016 chr2 91944152 91955470 11319 * character(0) NA 0 NA 1.70757655332788 9 0.994018918889933 11 NA NA -5.76441037875108 LTS-016 chr2 95537183 95537605 423 * c(TEKT4, LOC442028) 0.043 1 NA 1.34481421335959 9 1.39298711807077 9 9 0 -5.76441035060748 LTS-016 chr2 95537606 96458039 920434 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.171979574928647 9 0.197277089394587 0.971517051221269 720 0.52296666019489 6 5 1 -6.73843704991496 LTS-016 chr2 96458040 96504594 46555 * character(0) 0.292 1 NA 0.917461709451158 23 0.398272053323476 6 6 0 -5.76470047975666 LTS-016 chr2 96504595 130961864 34457270 * c(RAB6C-AS1, RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4783, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, MAP3K2, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, TUBA3E, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, CNTNAP5, FBLN7, C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, GPAT2, ITPRIPL1, ADRA2B, NA NA NA NA NA NA NA NA NA LTS-016 LINC01106, SEPT10, SULT1C2P1, FAHD2B, DBI, LONRF2, CCDC138, C1QL2, DUSP2, FOXD4L1, CFAP221, VWA3B, CREG2, ANKRD23, EN1, LINC00116, ERCC3, FHL2, SNRNP200, CLASP1, NCAPH, TMEM131, PSD4, NIFK-AS1, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, STARD7-AS1, MED15P9, PLGLA, RGPD4, TFCP2L1, GYPC, CYP27C1, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 IL1RN, INHBB, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, LOC389033, AFF3, LIMS1, FLJ42351, ASTL, LINC01191, FAR2P1, SULT1C3, MYO7B, NPAS2, NPHP1, COA5, INSIG2, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POLR2D, CCDC93, POU3F3, SEMA4C, STEAP3, ACOXL, WDR33, CNOT11, SMPD4, TMEM127, IWS1, LIMS2, KANSL3, PROC, IL36G, UGGT1, STARD7, DPP10, EPB41L5, ANKRD36B, PTPN4, RALB, RANBP2, SLC5A7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, POTEF, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, SAP130, MZT2B, UXS1, SLC35F5, TSGA10, TMEM177, LMAN2L, AMMECR1L, RAB6C, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, TMEM87B, LINC01101, MARCO, IL18RAP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 IL1RL2, IL18R1, DDX18, FER1L5, CCDC74B, IL1RL1, NEURL3, CIAO1, TGFBRAP1, HS6ST1, MAP4K4, CHST10, GCC2, EIF5B) 0.313771076686178 350 0.113276084294192 0.907279660062992 17709 0.555676218680512 6 4 2 -6.9456293297079 LTS-016 NA NA NA NA LTS-016 chr2 130961865 130961874 10 * character(0) NA 0 NA 1.064 1 NA NA NA NA NA LTS-016 chr2 130961875 130989028 27154 * character(0) 0.350489435974904 6 0.0426129870657604 1.46551417516887 40 0.565197015230655 17 11 6 -6.75219513357361 LTS-016 chr2 130989029 131907278 918250 * c(CYP4F30P, FAR2P2, FAM168B, AMER3, PTPN18, GPR148, ARHGEF4, PLEKHB2, CFC1, POTEI, CFC1B, POTEJ, CCDC115, IMP4) 0.326 1 NA 0.926299932581025 733 0.217732668568801 6 6 0 -5.77557141063467 LTS-016 chr2 131907279 132227894 320616 * c(WTH3DI, LINC01120, NOC2LP2, LOC440910, POTEE, PLEKHB2) NA 0 NA 0.658722392136497 138 0.279792730178582 4 NA NA -5.76441013650379 LTS-016 chr2 132227895 132287251 59357 * c(MIR4784, TUBA3D, LOC150776, MZT2A, CCDC74A) 0.346 1 NA 0.898155673897736 191 0.256957906622263 6 6 0 -5.76647435107785 LTS-016 chr2 132287252 132289521 2270 * CCDC74A NA 0 NA 0.492461778866103 40 0.395937996149488 3 NA NA -5.76442114753455 LTS-016 chr2 132289522 135659415 3369894 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, TMEM163, CCDC74A) 0.312078248159703 20 0.0958179606282004 0.964435151987754 732 0.398168503954209 6 4 2 -6.79400050431373 LTS-016 chr2 135659416 137852726 2193311 * c(CCNT2-AS1, LOC100507600, ACMSD, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) 0.337293690077903 31 0.085982243728337 0.846030412238858 1376 0.265606333551806 6 4 2 -6.99935875116183 LTS-016 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.074 1 NA NA NA NA NA LTS-016 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.2949699696661 20 0.137063143343343 0.963698744020993 988 0.502004850686813 6 4 2 -6.80518868103866 LTS-016 chr2 143642881 169630178 25987298 * c(TANK, LOC100144595, ZEB2-AS1, SNORA70F, LOC100506124, TTC21B-AS1, LY75-CD302, MIR4774, MIR4785, MIR4773-1, MIR4773-2, CERS6-AS1, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, XIRP2, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, SLC38A11, WDSUB1, UPP2, DPP4, FAP, COBLL1, PLA2R1, CERS6, GCA, GALNT3, EPC2, ARL5A, GCG, MMADHC, STK39, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NA NA NA NA NA NA NA NA NA LTS-016 NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, TTC21B, CSRNP3, PKP4, TANC1, B3GALT1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.302120754112334 118 0.0973354571634005 0.853160541269446 10371 0.269305950940826 5 4 1 -7.6905766215174 LTS-016 NA NA NA NA LTS-016 chr2 169630179 169630483 305 * c(CERS6-AS1, CERS6) 0.282 1 NA 1.06533129606575 7 0.455080840542174 7 7 0 -5.76441124702631 LTS-016 chr2 169630484 170386294 755811 * c(CERS6-AS1, DHRS9, KLHL41, NOSTRIN, BBS5, CERS6, LRP2, SPC25, G6PC2, FASTKD1, ABCB11) 0.129138087604015 9 0.14887392130405 0.87979863123627 991 0.458845042145811 6 5 1 -6.84541027675508 LTS-016 chr2 170386295 170396718 10424 * FASTKD1 0.448 1 NA 0.769001911442574 41 0.292795414714863 5 5 0 -5.76458063714248 LTS-016 chr2 170396719 190597951 20201233 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR1245A, MIR3128, MIR3129, MIR3606, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, MIR1245B, CALCRL, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, DIRC1, COL3A1, COL5A2, NUP35, RBM45, CCDC173, UBR3, ATF2, MYO3B, DUSP19, ANKAR, TTC30B, ZSWIM2, ZNF385B, KLHL23, PPP1R1C, GPR155, FAM171B, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, NA NA NA NA NA NA NA NA NA LTS-016 CCDC141, LINC01305, METTL5, OLA1, SLC40A1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, ITGAV, LINC01116, CERKL, SP5, HAGLR, FSIP2, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, GULP1, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, ASNSD1, ZC3H15, CWC22, PLEKHA3, SP3, SSB, SSFA2, MIR561, TFPI, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 DCAF17, LNPK, CDCA7, WDR75, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, ZNF804A, TTC30A, PPIG, CIR1, TLK1) 0.31418255723037 230 0.0864068116465235 0.844037841450219 13899 0.286095912695864 5 3 2 -7.4840623911866 LTS-016 NA NA NA NA LTS-016 chr2 190597952 190602372 4421 * ANKAR NA 0 NA 0.735 1 NA NA NA NA NA LTS-016 chr2 190602373 203826788 13224416 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, OSGEPL1-AS1, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, ANKAR, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, NA NA NA NA NA NA NA NA NA LTS-016 ALS2, MPP4, NIF3L1, PCGEM1, OSGEPL1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, ORMDL1, BZW1) 0.300766066621193 122 0.100410483893406 0.812893659190651 8184 0.286924832832075 5 4 1 -7.06540559185288 LTS-016 NA NA NA NA LTS-016 chr2 203826789 220116114 16289326 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, ABCB6, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, ABI2, LANCL1, PARD3B, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, SLC23A3, LINC00608, GPBAR1, CYP27A1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, CFAP65, NA NA NA NA NA NA NA NA NA LTS-016 PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, ACADL, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, PLEKHM3, C2orf80, DYTN, VWC2L, MIR26B, MAP2, MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PRKAG3, FEV, INO80D, ANKZF1, MREG, PECR, CYP20A1, PTH2R, MARCH4, ZDBF2, USP37, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, TMBIM1, RNF25, LINC00607, RAPH1, NBEAL1, SLC11A1, TNP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, ATG9A, FAM134A, GLB1L, SPAG16, CARF, NHEJ1, WNT10A, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, CD28, TTLL4) 0.294867394750489 241 0.0955455475663363 0.88077635033832 11830 0.343683289336501 6 4 2 -7.38222245410015 LTS-016 NA NA NA NA LTS-016 chr2 220116115 220116317 203 * TUBA4A NA 0 NA 0.995 1 NA NA NA NA NA LTS-016 chr2 220116318 223789385 3673068 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, PAX3, ASIC4, PTPRN, SLC4A3, TUBA4A, CHPF, TUBA4B) 0.300859675073486 62 0.0816412422606587 0.953368217118079 2207 0.267435933301954 6 4 2 -6.88530708375541 LTS-016 chr2 223789386 223791699 2314 * ACSL3 NA 0 NA 0.769 1 NA NA NA NA NA LTS-016 chr2 223791700 232995536 9203837 * c(MIR1471, MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, COL4A3, COL4A4, DIS3L2, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, ACSL3, KCNE4, C2orf72, SNORD82, AGFG1, HTR2B, SP110, SPATA3-AS1, IRS1, NCL, NPPC, PDE6D, CAB39, SERPINE2, PID1, DOCK10, C2orf83, MFF, PSMD1, PTMA, WDFY1, NYAP2, SNORD20, CCL20, LOC646736, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCG2, NA NA NA NA NA NA NA NA NA LTS-016 FAM124B, TM4SF20, ARMC9, SPHKAP, SLC19A3, ITM2C, RHBDD1, CUL3, DNER, GPR55, B3GNT7, TRIP12, SP140L) 0.296782882029987 120 0.0829571047740517 0.85710451944688 5214 0.378609113626936 5 4 1 -7.29302597092727 LTS-016 NA NA NA NA LTS-016 chr2 232995537 232995625 89 * DIS3L2 NA 0 NA 1.211 1 NA NA NA NA NA LTS-016 chr2 232995626 233415272 419647 * c(CHRND, CHRNG, DIS3L2, TIGD1, ALPI, ALPP, ALPPL2, ECEL1P2, PRSS56, ECEL1) 0.251350830253622 15 0.155974906406676 0.997938836671018 673 0.616365432494896 8 6 2 -6.77044006183549 LTS-016 chr2 233415273 239358218 5942946 * c(LOC100286922, UBE2F-SCLY, ARL4C, RAMP1, COPS8, AGAP1, COL6A3, UBE2F, LOC151174, MSL3P1, TIGD1, SH3BP4, NGEF, GIGYF2, TRAF3IP1, GBX2, ESPNL, INPP5D, RBM44, KCNJ13, KLHL30, C2orf82, ASB18, DNAJB3, NEU2, PRLH, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, HES6, ACKR3, SAG, RAB17, LOC643387, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, EFHD1, NA NA NA NA NA NA NA NA NA LTS-016 ILKAP, DGKD, PER2, LRRFIP1, EIF4E2) 0.296645073442927 142 0.098237907372412 0.87694643089235 5105 0.367471539688537 6 4 2 -7.04919444543564 LTS-016 NA NA NA NA LTS-016 chr2 239358219 242815745 3457527 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2 NA NA NA NA NA NA NA NA NA LTS-016 ) 0.315675809870527 77 0.090744196660803 0.937457247091754 4128 0.592460812944417 6 4 2 -6.78713021692022 LTS-016 NA NA NA NA LTS-016 chr2 242815746 243037216 221471 * LOC728323 NA 0 NA 0.928135272041921 39 0.180473088748664 6 NA NA -5.76784868522457 LTS-016 chr3 239351 407661 168311 * CHL1 0.492 1 NA 1.244091869125 63 0.383743326462101 8 8 0 -5.7644395172228 LTS-016 chr3 407662 10420087 10012426 * c(EGOT, GHRLOS, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, ARPC4, TADA3, CHL1, FANCD2OS, IL17RE, CPNE9, CIDECP, CNTN4, FANCD2, THUMPD3, TTLL3, CNTN6, SUMF1, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, GHRL, ARL8B, SETD5, EMC3, BRK1, RAD18, LRRN1, CIDEC, SEC13, SETMAR, MTMR14, NA NA NA NA NA NA NA NA NA LTS-016 VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, EDEM1, TATDN2, SRGAP3) 0.43508564028361 102 0.106606909707755 1.21934313102907 5180 0.369702650954955 8 4 4 -6.78635193931476 LTS-016 NA NA NA NA LTS-016 chr3 10420088 10491476 71389 * c(MIR885, ATP2B2) NA 0 NA 1.24657145462241 54 0.270507329999592 8 NA NA -5.76442227740956 LTS-016 chr3 10491477 10865354 373878 * c(LINC00606, ATP2B2, SLC6A11) 0 1 NA 0.916383388875153 25 1.38524428290946 6 6 0 -5.76461421337414 LTS-016 chr3 10865355 15119783 4254429 * c(MKRN2OS, FGD5P1, FGD5-AS1, SLC6A1-AS1, ATG7, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00620, HRH1, TPRXL, CCDC174, PPARG, TMEM40, RAF1, RPL32, RBSN, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, VGLL4, IQSEC1) 0.318316278930058 84 0.0877871160223956 1.00377174664383 3565 0.342181963624198 6 4 2 -6.83073475609678 LTS-016 chr3 15119784 15122185 2402 * RBSN NA 0 NA 0.647 1 NA NA NA NA NA LTS-016 chr3 15122186 20219885 5097700 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, DPH3, LOC339862, COL6A4P1, RAB5A, SATB1, RBSN, BTD, MIR563, COLQ, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5) 0.33235874048006 48 0.0596969741561853 0.893164576395058 2509 0.268140180913302 6 4 2 -6.93781019459602 LTS-016 chr3 20219886 20225571 5686 * c(SGO1-AS1, SGO1) NA 0 NA 0.827031088749158 13 0.10172839655999 5 NA NA -5.76460640315832 LTS-016 chr3 21459922 21461442 1521 * character(0) 0.473 1 NA 1.19145466620936 28 0.369263336083697 8 8 0 -5.76442670651178 LTS-016 chr3 21461443 26752211 5290769 * c(MIR548AC, MIR4792, MIR4442, LRRC3B, LINC00691, NKIRAS1, LINC00692, OXSM, NGLY1, RARB, RPL15, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0.437593153846924 16 0.0468094986799332 1.20534655695266 1015 0.340844594653703 8 4 4 -6.91521495164521 LTS-016 chr3 26752212 27151599 399388 * LRRC3B NA 0 NA 0.975 1 NA NA NA NA NA LTS-016 chr3 27151600 28502605 1351006 * c(ZCWPW2, CMC1, NEK10, AZI2, EOMES, SLC4A7) 0 1 NA 1.08055683523078 754 0.255087553635051 7 7 0 -5.77008212395224 LTS-016 chr3 28502606 28520304 17699 * ZCWPW2 NA 0 NA 1.421 1 NA NA NA NA NA LTS-016 chr3 28520305 42914012 14393708 * c(ACVR2B-AS1, PDCD6IP, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, ZCWPW2, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, NA NA NA NA NA NA NA NA NA LTS-016 EIF1B-AS1, MYD88, NKTR, VILL, DYNC1LI1, SS18L2, PLCD1, CMTM6, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, VIPR1, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.435641170853372 184 0.10425703939079 1.21090154282267 8815 0.478247533566645 8 4 4 -6.79989786251328 LTS-016 NA NA NA NA LTS-016 chr3 42914013 42917507 3495 * c(ACKR2, CYP8B1) 0 1 NA 1.2977819684217 63 1.20759934972329 8 8 0 -5.76441196733908 LTS-016 chr3 42917508 42958563 41056 * c(ACKR2, CYP8B1, ZNF662) NA 0 NA 1.22560698033347 95 0.233064745004348 8 NA NA -5.76462005032886 LTS-016 chr3 42958564 42958568 5 * ZNF662 NA 0 NA 1.132 1 NA NA NA NA NA LTS-016 chr3 42958569 45124338 2165770 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, TMEM42, EXOSC7, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, ZDHHC3, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, CDCP1, MIR564, TGM4, CLEC3B, FAM198A, ZNF35, POMGNT2, ZNF502) 0.259439229910182 10 0.227335679362284 1.13750454345147 2200 0.497312500524668 7 5 2 -6.755073294431 LTS-016 chr3 45124339 45125566 1228 * CDCP1 0.453 1 NA 1.19054916460499 19 0.262512656336494 8 8 0 -5.76443741876493 LTS-016 chr3 45125567 46716087 1590521 * c(LOC100132146, LARS2-AS1, CXCR6, CCR9, CCR1, CCR3, CCR5, SACM1L, LARS2, TMEM158, ALS2CL, XCR1, LTF, LZTFL1, SLC6A20, LIMD1-AS1, CDCP1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2) 0.435994200497211 47 0.0969000887359747 1.13753220452776 2035 0.379551241629608 7 4 3 -6.79453985927249 LTS-016 chr3 46716088 47059256 343169 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.426108995838084 13 0.128853176234197 1.34962232584999 846 0.432102058906624 9 5 4 -6.74273285005616 LTS-016 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.938 1 NA NA NA NA NA LTS-016 chr3 47061216 48723332 1662117 * c(MIR1226, MIR711, MIR4793, MIR4443, NME6, CSPG5, TREX1, COL7A1, CELSR3, DHX30, SCAP, KLHL18, PTPN23, FBXW12, KIF9-AS1, SETD2, MAP4, TMEM89, SHISA5, TMA7, ZNF589, NCKIPSD, PFKFB4, PLXNB1, ELP6, KIF9, SPINK8, SLC26A6, SMARCC1, UQCRC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.410808924293142 36 0.147345234921148 1.21877359389211 3706 0.330829318775971 8 4 4 -6.74009345693562 LTS-016 chr3 48723333 49215459 492127 * c(ARIH2, USP19, WDR6, KLHDC8B, LAMB2P1, NDUFAF3, IMPDH2, LAMB2, MIR191, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, ARIH2OS, C3orf84, CCDC71, SLC25A20) 0 1 NA 1.19661217865733 1453 0.258547775964353 8 8 0 -5.77352375179549 LTS-016 chr3 49215460 51937106 2721647 * c(BSN-AS2, MIR4271, IQCF4, MIR4787, RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, CISH, IQCF1, LSMEM2, DAG1, DOCK3, RAD54L2, NAT6, AMT, GNAI2, GNAT1, GPX1, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, C3orf62, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, IQCF3, IQCF6, MST1, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, RNF123, SEMA3F, C3orf84, TCTA, UBA7, USP4, NA NA NA NA NA NA NA NA NA LTS-016 IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, HYAL3, NICN1, MON1A, HYAL2, BSN, CACNA2D2, DCAF1, IP6K1) 0.176713564151207 11 0.229632671099658 1.22112867421494 5089 0.370865421570075 8 7 1 -6.75209155066891 LTS-016 NA NA NA NA LTS-016 chr3 51937107 52264907 327801 * c(LINC00696, PARP3, ABHD14A-ACY1, TWF2, GPR62, IQCF1, DUSP7, ALAS1, ABHD14A, POC1A, TLR9, PCBP4, RPL29, ABHD14B, RRP9, ACY1) 0.364 1 NA 1.23495633813941 803 0.249910620600566 8 8 0 -5.76501991151888 LTS-016 chr3 52264908 53886912 1622005 * c(SNORD19B, TMEM110-MUSTN1, NISCH, TWF2, GLYCTK, PPM1M, STAB1, DNAH1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, PRKCD, DCP1A, GLT8D1, SEMA3G, NT5DC2, NEK4, SNORD19, SNORD69, TKT, TNNC1, CACNA1D, WDR82, BAP1, RFT1) 0.448993268868586 88 0.0770884224081897 1.21298770758167 3611 0.3399095801584 8 4 4 -6.85936420868777 LTS-016 chr3 53886913 53894223 7311 * IL17RB 0 1 NA 1.11140115565029 25 0.306165940844721 7 7 0 -5.76441229630615 LTS-016 chr3 53894224 56468977 2574754 * c(MIR3938, CACNA2D3-AS1, ERC2, IL17RB, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, ESRG, ACTR8) 0.369395191556052 18 0.169770943340179 1.24211996061262 678 0.606060242543893 8 5 3 -6.73384961534216 LTS-016 chr3 56468978 56592848 123871 * c(ERC2, CCDC66) NA 0 NA 1.21549606679646 14 0.148905973724995 8 NA NA -5.76738514768055 LTS-016 chr3 56592849 56593680 832 * CCDC66 0.433 1 NA 0.761121415740243 5 0.144505363222269 5 5 0 -5.76449225842581 LTS-016 chr3 56593681 56762832 169152 * c(FAM208A, CCDC66, ARHGEF3) 0.451357749629606 15 0.0507461469332542 1.00656833986909 350 0.234972189748007 6 3 3 -7.03894641421052 LTS-016 chr3 56762833 56762837 5 * ARHGEF3 NA 0 NA 1.091 1 NA NA NA NA NA LTS-016 chr3 56762838 59033091 2270254 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.435250224599772 56 0.114810672780955 1.13847011404178 2708 0.287231256619842 7 4 3 -6.78642546251439 LTS-016 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 2.241 1 NA NA NA NA NA LTS-016 chr3 59035205 62189189 3153985 * c(C3orf67, FHIT, PTPRG) 0.469058209420875 3 0.0158219257150744 1.29490477618442 129 0.326715274017244 8 4 4 -10.4048985566974 LTS-016 chr3 62189190 62280491 91302 * c(PTPRG-AS1, PTPRG) 0 1 NA 1.22833696106882 121 0.322488729168589 8 8 0 -5.76460613816465 LTS-016 chr3 62280492 63663137 1382646 * c(PTPRG-AS1, SYNPR-AS1, SNTN, SYNPR, LINC00698, FEZF2, C3orf14, PTPRG, CADPS) 0.293657748584138 14 0.229226997719545 1.23633596476284 612 0.704082545101977 8 6 2 -6.74389399411396 LTS-016 chr3 63663138 63663692 555 * character(0) 0.487 1 NA 1.32447013774551 11 0.354319373139288 9 9 0 -5.7644184156414 LTS-016 chr3 63663693 66434643 2770951 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, PRICKLE2, LRIG1, ADAMTS9, ATXN7, MIR548A2, THOC7, MAGI1, PSMD6) 0.465661221481795 31 0.0351614096870816 1.23394911138443 1129 0.286852039802439 8 4 4 -7.79666399380158 LTS-016 chr3 66434644 67060607 625964 * c(SLC25A26, LRIG1, KBTBD8) NA 0 NA 1.19803351982534 186 0.262795469723689 8 NA NA -5.77504946116357 LTS-016 chr3 67060608 67410804 350197 * c(MIR4272, KBTBD8) 0 1 NA 0.982803941112593 31 0.466392363315631 6 6 0 -5.76517779869286 LTS-016 chr3 67410805 74312218 6901414 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, SUCLG2, UBA3) 0.358596671675547 62 0.0577328339538305 0.867124334891829 2130 0.250332743342105 5 3 2 -7.26783854746195 LTS-016 chr3 74312219 74313224 1006 * CNTN3 0.232 1 NA 1.00219665362521 21 0.196062392887473 6 6 0 -5.76444587445694 LTS-016 chr3 74313225 75679977 1366753 * c(MIR1324, CNTN3, FAM86DP) 0.415 1 NA 0.942862952586257 127 0.208516259249018 6 6 0 -5.76774267619722 LTS-016 chr3 75679978 75679988 11 * MIR1324 0.437 1 NA 2.657 1 NA NA NA NA NA LTS-016 chr3 75679989 75716122 36134 * MIR1324 0.364743995973663 23 0.0973883875198445 1.76296699761435 64 1.59060773792361 11 7 4 -6.73307220300089 LTS-016 chr3 75716123 75716169 47 * character(0) NA 0 NA 0.973 1 NA NA NA NA NA LTS-016 chr3 75716170 75781134 64965 * ZNF717 0.388326906376028 16 0.0849907593016245 0.842121511992646 46 0.869563880916847 5 3 2 -6.73541771412489 LTS-016 chr3 75781135 75781165 31 * ZNF717 0.326 1 NA 2.123 1 NA NA NA NA NA LTS-016 chr3 75781166 75785597 4432 * ZNF717 0.250623057302958 18 0.0992858157171223 1.13451216000729 39 0.828282717711072 16 12 4 -6.73768470882391 LTS-016 chr3 75785598 75785630 33 * ZNF717 0.318 1 NA 0.598 1 NA NA NA NA NA LTS-016 chr3 75785631 75787726 2096 * ZNF717 0.335335843563529 34 0.0946448093066849 0.759974872190485 96 0.645623480025724 9 6 3 -6.73512900273357 LTS-016 chr3 75787727 75787794 68 * ZNF717 0.462 1 NA 1.12076221535154 2 0.490024999362278 7 7 0 -5.76441017325155 LTS-016 chr3 75787795 75790878 3084 * ZNF717 0.412421770351529 13 0.0812058953272325 0.66606305898226 57 0.492524782781674 4 2 2 -6.73342308270435 LTS-016 chr3 75790879 78766573 2975695 * c(ZNF717, ROBO1, ROBO2) 0.398992646435277 8 0.0484721937963259 0.960646000049142 403 0.230251756106128 6 3 3 -6.79478686500493 LTS-016 chr3 78766574 78766886 313 * ROBO1 NA 0 NA 1.277 1 NA NA NA NA NA LTS-016 chr3 78766887 89530057 10763171 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.455467993965805 20 0.0341736663775517 1.1291701715973 1193 0.286226173372971 7 4 3 -7.80981538921979 LTS-016 chr3 89530058 90283666 753609 * EPHA3 NA 0 NA 1.19990210998215 49 0.329447254044223 8 NA NA -5.77200056500712 LTS-016 chr3 93591838 93593119 1282 * PROS1 0.499 1 NA 1.07754732408271 25 0.313810038080365 7 7 0 -5.76441468176642 LTS-016 chr3 93593120 97888474 4295355 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, GABRR3, LINC00879, OR5H1, EPHA6, OR5H14, OR5H15, STX19, PROS1, NSUN3, OR5AC2, ARL6, MINA) 0.341925217626972 13 0.219739939532259 1.10435596103553 1011 0.36217116698995 7 5 2 -6.75679021198349 LTS-016 chr3 97888475 97983040 94566 * OR5H15 0.408 1 NA 1.13401649658858 5 1.24692373463657 7 7 0 -5.76443662173245 LTS-016 chr3 97983041 101571959 3588919 * c(ZBTB11-AS1, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, DCBLD2, FAM172BP, CPOX, ABI3BP, OR5K1, ZBTB11, GPR15, PDCL3P4, LNP1, OR5K2, OR5K3, OR5K4, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, OR5H6, OR5H2, CEP97, CMSS1, ADGRG7, NXPE3, TOMM70) 0.450918452930574 54 0.0447991753006353 1.08803202058831 2660 0.31817472600857 7 4 3 -7.2787215163065 LTS-016 chr3 101571960 101575882 3923 * NFKBIZ 0.298 1 NA 1.21114289783979 40 0.230742719417325 8 8 0 -5.76445940167019 LTS-016 chr3 101575883 108129765 6553883 * c(LINC00882, HHLA2, ZPLD1, LINC00635, LOC152225, ALCAM, MYH15, LINC00636, DUBR, IFT57, BBX, NFKBIZ, MIR548A3, CCDC54, CBLB, CD47) 0.266567616869639 9 0.228554151132724 1.11446104361953 1083 0.387980635013818 7 5 2 -6.7468183303337 LTS-016 chr3 108129766 110790879 2661114 * c(PVRL3-AS1, DPPA2, MYH15, NECTIN3, MORC1, FLJ22763, LINC01205, TRAT1, DPPA4, KIAA1524, LINC00488, RETNLB, GUCA1C, DZIP3) 0.488 1 NA 1.14174180783187 899 0.958025184884845 7 7 0 -5.76638875214561 LTS-016 chr3 110790880 122599330 11808451 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, POLQ, FSTL1, LRRC58, CCDC58, CD200R1, ADPRH, CSTA, DTX3L, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, PARP15, GPR156, DRD3, TIGIT, USF3, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, FAM162A, GOLGB1, TUSC7, RABL3, SLC9C1, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, TMPRSS7, CD200R1L, KPNA1, LSAMP, MIR198, CD200, NDUFB4, NA NA NA NA NA NA NA NA NA LTS-016 ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, SLC35A5, TMEM39A, ABHD10, CFAP44, EAF2, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, SLC15A2, MIR567, MIR568, UPK1B, ZNF80, ZBED2, HSPBAP1, C3orf52, QTRT2, NAA50, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, CD80, CD86, STXBP5L, IQCB1) 0.435694520432737 148 0.10870812767843 1.10320354744748 8751 0.333497840883477 7 4 3 -6.77638221654724 LTS-016 NA NA NA NA LTS-016 chr3 122599331 133368362 10769032 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, ALG1L, HACD2, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, GATA2, SEC22A, NPHP3, ATP2C1, GP9, NA NA NA NA NA NA NA NA NA LTS-016 DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, LOC339874, H1FX-AS1, CFAP100, NPHP3-AS1, ITGB5, MCM2, MYLK, PODXL2, ACKR4, PLXNA1, SEMA5B, ROPN1, SLC41A3, ACPP, CDV3, IFT122, MUC13, HMCES, ISY1, HEG1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, TMEM108, SNORA7B, SNORA58, TRH, FAM86HP, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, ABTB1, ACAD11, BFSP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12) 0.441853734777896 207 0.10514105605252 1.18244047529557 9376 0.324355118693481 8 4 4 -6.96900173112902 LTS-016 NA NA NA NA LTS-016 chr3 133368363 133472450 104088 * c(TOPBP1, TF) 0 1 NA 1.1237075145974 53 1.00829996998066 7 7 0 -5.76442961710624 LTS-016 chr3 133472451 135820883 2348433 * c(MIR4788, EPHB1, ANAPC13, KY, AMOTL2, RAB6B, PPP2R3A, SRPRB, RYK, SLCO2A1, TF, C3orf36, CEP63) 0.346104766482519 14 0.189873830288883 1.20151730553941 1054 0.358669676463828 8 5 3 -6.765100142969 LTS-016 chr3 135820884 136699330 878447 * c(STAG1, NCK1, PCCB, IL20RB, MSL2, PPP2R3A, SLC35G2) NA 0 NA 1.16140932883941 632 0.265358513798508 7 NA NA -5.78367198075442 LTS-016 chr3 136699331 137881275 1181945 * c(DZIP1L, A4GNT, DBR1, CLDN18, IL20RB, SOX14) 0.486 1 NA 1.25887149637205 347 0.268837599357565 8 8 0 -5.76468203082893 LTS-016 chr3 137881276 140685945 2804670 * c(PISRT1, MRAS, ARMC8, TRIM42, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, DBR1, PIK3CB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, ESYT3, COPB2) 0.465405044229551 25 0.0344086713876992 1.25473169209231 1827 0.309914751409159 8 4 4 -7.82236449097643 LTS-016 chr3 140685946 140689720 3775 * SLC25A36 NA 0 NA 0.976 1 NA NA NA NA NA LTS-016 chr3 140689721 141536785 847065 * c(GRK7, ZBTB38, SLC25A36, RASA2, SPSB4, PXYLP1, RNF7) 0.468752554882013 17 0.0398244308699779 1.14971085779872 753 0.321054749239106 8 4 4 -7.71584259887768 LTS-016 chr3 141536786 141536947 162 * character(0) 0.363 1 NA 1.16702848210937 5 0.548555557806135 7 7 0 -5.76441112834156 LTS-016 chr3 141536948 143710830 2173883 * c(LOC100289361, LOC100507389, SLC9A9-AS1, C3orf58, U2SURP, GK5, PCOLCE2, SLC9A9, PAQR9, ATP1B3, PLS1, XRN1, ATR, TFDP2, TRPC1, CHST2) 0.424793333321422 49 0.116742794647211 1.13360504269159 1910 0.341935938482177 7 4 3 -6.75579618558634 LTS-016 chr3 143710831 150804556 7093726 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, ERICH6, CP, CPA3, CPB1, AGTR1, C3orf58, WWTR1, SERP1, GYG1, PLSCR5, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, PLOD2, PLSCR1, PLSCR2, PLSCR4, LOC646903, SIAH2, HLTF, TM4SF4, CLRN1, ZIC1, EIF2A, ZIC4, HPS3, TSC22D2) 0.38211507152885 39 0.113629794043934 1.43190399536984 2458 0.387276217835748 9 5 4 -6.78547122126008 LTS-016 chr3 150804557 150804623 67 * MED12L NA 0 NA 1.21 1 NA NA NA NA NA LTS-016 chr3 150804624 152555687 1751064 * c(MIR548H2, MIR5186, MED12L, AADAC, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY1, P2RY13, GPR87, SUCNR1, TMEM14EP, P2RY12, P2RY14) 0.450265226370124 18 0.0417679944392489 1.12496191177333 1016 0.247536493478326 8 4 4 -7.33442998089661 LTS-016 chr3 152555688 183704958 31149271 * c(LOC100128164, TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, NAALADL2-AS3, KCNAB1-AS2, KCNAB1-AS1, LINC01014, LOC101243545, KCNMB2, PDCD10, DNAJC19, OTOL1, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, ECT2, RPL22L1, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, NAALADL2, TIPARP, ARHGEF26, GHSR, GPR160, LAMP3, KCNMB3, NA NA NA NA NA NA NA NA NA LTS-016 GOLIM4, C3orf33, TRIM59, SCHIP1, CCDC39, LINC00880, LRRIQ4, SAMD7, GPR149, SOX2-OT, IL12A, KPNA4, LEKR1, TMEM212, C3orf80, FLJ46066, MIR15B, MIR16-2, MLF1, MME, NDUFB5, CLDN11, P2RY1, NMD3, ZNF639, RSRC1, PEX5L, SERPINI1, SERPINI2, PIK3CA, PLD1, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, MYNN, EIF5A2, MCCC1, LXN, CCNL1, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, GNB4, ZMAT3, LINC01330, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SKIL, SLC2A2, IQCJ, SOX2, SSR3, SCARNA7, MIR551B, MIR569, TERC, SEC62, LINC00886, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, B3GNT5, ACTRT3, GFM1, ACTL6A, B3GALNT1, TNFSF10, GMPS, USP13, KLHL6, SLC33A1, EGFEM1P) 0.386827815704166 205 0.113748966392369 1.44968493967792 11966 0.434488300078551 9 5 4 -6.87509546669457 LTS-016 NA NA NA NA LTS-016 chr3 183704959 185431219 1726261 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EHHADH, EIF4G1, LIPH, HTR3D, EPHB3, VPS8, HTR3E, C3orf70, EHHADH-AS1, POLR2H, ABCF3, PSMD2, SENP2, MAGEF1, IGF2BP2-AS1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.400298280107461 41 0.10417873946299 1.53922360729328 3174 0.383964144862289 10 6 4 -6.7379818433103 LTS-016 chr3 185431220 185542831 111612 * c(IGF2BP2, IGF2BP2-AS1) NA 0 NA 1.51660888599709 63 0.448407818206342 10 NA NA -5.76455924102033 LTS-016 chr3 185542832 185633693 90862 * TRA2B NA 0 NA 0.542 1 NA NA NA NA NA LTS-016 chr3 185633694 185774813 141120 * c(ETV5, NMRAL1P1, TRA2B) 0.047 1 NA 0.674139568778076 153 0.327227608830209 4 4 0 -5.76483433832304 LTS-016 chr3 185774814 195391111 9616298 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, CLDN16, RPL39L, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, AHSG, EIF4A2, ETV5, FGF12, ACAP2, LOC253573, UTS2B, FETUB, GP5, TPRG1, HRG, HES1, LPP-AS2, RTP2, OSTN, ATP13A5, APOD, IL1RAP, KNG1, FLJ42393, LINC00884, LPP, OPA1, DNAJB11, NA NA NA NA NA NA NA NA NA LTS-016 PPP1R2, TBCCD1, P3H2, LSG1, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SDHAP2, ATP13A3, ATP13A4, MGC2889, TP63, CLDN1, TMEM44, ADIPOQ) 0.0580693045828246 115 0.0532411221349977 0.671096298888583 5051 0.280786452150173 4 4 0 -6.77300368319353 LTS-016 NA NA NA NA LTS-016 chr3 195391112 195395402 4291 * SDHAP2 0.288 1 NA 0.809257198456663 3 0.0400790884793221 5 5 0 -5.76442161774434 LTS-016 chr3 195395403 195426455 31053 * c(MIR570, SDHAP2) 0.324929773053495 2 0.0636396103067893 0.799432160736389 30 0.211239649817861 6 4 2 -6.79164228246085 LTS-016 chr3 195426456 195456607 30152 * MUC20 0.421405949457128 13 0.0545074683191588 1.24730100022654 58 0.394705656602362 8 4 4 -6.74265134846023 LTS-016 chr3 195456608 195459980 3373 * MUC20 NA 0 NA 0.698 1 NA NA NA NA NA LTS-016 chr3 195459981 195473784 13804 * c(MUC20, MUC4) 0.488 1 NA 0.754883411628736 33 0.400967355374172 5 5 0 -5.76464051060212 LTS-016 chr3 195473785 195479237 5453 * MUC4 0.052 1 NA 1.13883163933624 25 0.5905955835708 7 7 0 -5.76441925121813 LTS-016 chr3 195479238 195962304 483067 * c(TNK2, ZDHHC19, SLC51A, SDHAP1, LINC00885, MUC4, TFRC) 0.156712595624785 19 0.130355855728874 0.688473499237831 657 0.272849792354888 5 4 1 -6.98792964324801 LTS-016 chr3 195962305 195962403 99 * character(0) NA 0 NA 0.68 1 NA NA NA NA NA LTS-016 chr3 195962404 197616531 1654128 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, NCBP2-AS2, RNF168, DLG1, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, RUBCN) 0.0883906699391206 24 0.0850232598183869 0.635327386401222 2246 0.184282020077494 4 4 0 -6.8924630749472 LTS-016 chr3 197616532 197770512 153981 * c(RPL35A, IQCG, LMLN) NA 0 NA 0.650748307971813 257 0.149603117132104 4 NA NA -5.76501963042924 LTS-016 chr4 53174 53360 187 * c(ZNF595, ZNF718) 0.084 1 NA 1.39971336743276 3 0.711605461849003 9 9 0 -5.76441013475039 LTS-016 chr4 53361 516114 462754 * c(ZNF595, ZNF721, ZNF718, PIGG, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.292745836839493 18 0.127352785702331 0.873272854852998 425 0.353584977345217 6 4 2 -6.84114389399887 LTS-016 chr4 516115 516121 7 * PIGG NA 0 NA 0.998 1 NA NA NA NA NA LTS-016 chr4 516122 1020465 504344 * c(LOC100129917, PCGF3, CPLX1, SLC26A1, DGKQ, GAK, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, MFSD7, TMEM175) 0.331281641247209 39 0.0932079937262193 1.02406776079579 1116 0.359544971883436 6 4 2 -6.75292907124919 LTS-016 chr4 1020466 1020552 87 * FGFRL1 NA 0 NA 0.808 1 NA NA NA NA NA LTS-016 chr4 1020553 3422562 2402010 * c(MIR943, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, SPON2, TACC3, MXD4, ADD1, CTBP1, FAM53A, FGFR3, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, MSANTD1, POLN, LETM1, C4orf48, CFAP99, FGFRL1, UVSSA, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.320506564436718 62 0.120449906863636 0.944795668348107 4038 0.31039168886805 6 4 2 -6.75485126041231 LTS-016 chr4 3422563 3424065 1503 * RGS12 NA 0 NA 1.434 1 NA NA NA NA NA LTS-016 chr4 3424066 3591786 167721 * c(DOK7, LINC00955, HGFAC, LRPAP1, RGS12) 0.41004984041988 42 0.0541598968341623 1.13689181988692 446 0.395959778110087 7 4 3 -6.73634719189061 LTS-016 chr4 3591787 3768424 176638 * c(LOC100133461, ADRA2C, LINC00955) NA 0 NA 0.939 1 NA NA NA NA NA LTS-016 chr4 3768425 9370815 5602391 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR4274, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, OTOP1, CRMP1, ADRA2C, JAKMIP1, TRMT44, ZBTB49, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, HMX1, FAM86EP, USP17L6P, USP17L9P, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, TBC1D14, SORCS2, AFAP1, S100P, LOC650293, USP17L24, USP17L5, NA NA NA NA NA NA NA NA NA LTS-016 USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, MRFAP1, LOC93622, TADA2B, HTRA3, KIAA0232) 0.325610120659127 118 0.0901097243483482 0.987520857907097 3679 0.365907227187646 6 4 2 -6.78120865659785 LTS-016 NA NA NA NA LTS-016 chr4 9370816 9783278 412463 * c(MIR548I2, DRD5, DEFB131) NA 0 NA 0.938 1 NA NA NA NA NA LTS-016 chr4 9783279 25767093 15983815 * c(MIR3138, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, CLNK, CPEB2, PACRGL, LINC01085, DHX15, ADGRA3, DRD5, TAPT1, TAPT1-AS1, SEL1L3, LCORL, BOD1L1, FBXL5, FAM184B, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, KCNIP4-IT1, MIR218-1, CPEB2-AS1, LAP3, SEPSECS, DCAF16, LGI2, PI4K2B, SLC2A9, CC2D2A, GBA3, NKX3-2, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR572, MIR573, MED28, NA NA NA NA NA NA NA NA NA LTS-016 KCNIP4, FGFBP2, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, RAB28, CD38, WDR1, HS3ST1, FGFBP1) 0.31495842335389 132 0.0864926659492688 0.925951109902141 5172 0.367132352651084 6 4 2 -6.86256442194725 LTS-016 NA NA NA NA LTS-016 chr4 25767094 25769121 2028 * SEL1L3 NA 0 NA 0.781 1 NA NA NA NA NA LTS-016 chr4 25769122 48582909 22813788 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, PTTG2, LIAS, ARAP2, CNGA1, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, COMMD8, TMEM33, PGM2, C4orf19, NA NA NA NA NA NA NA NA NA LTS-016 TBC1D19, CHRNA9, N4BP2, ATP10D, NWD2, SLAIN2, STIM2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, PHOX2B, FAM114A1) 0.319803169079306 141 0.107620067016897 0.881751501259796 8054 0.597271781154811 6 4 2 -6.99737268574233 LTS-016 NA NA NA NA LTS-016 chr4 48582910 49064107 481198 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.844311388541347 273 0.183221501292495 5 NA NA -5.7818385091035 LTS-016 chr4 52709193 52962529 253337 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0.308 1 NA 0.939285653761763 411 0.233016438963543 6 6 0 -5.76522837590619 LTS-016 chr4 52962530 56238886 3276357 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.32444438736449 19 0.0945869753530197 0.933671126805834 1270 0.250109150646563 6 4 2 -6.77151425098626 LTS-016 chr4 56238887 68906584 12667698 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, LOC401134, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.320272153477104 37 0.0891947038517153 0.866527414260309 2879 0.229737179683754 5 3 2 -7.76424308141489 LTS-016 chr4 68906585 68907560 976 * UBA6-AS1 NA 0 NA 0.314484548124178 40 0.235340766298683 2 NA NA -5.76461864107199 LTS-016 chr4 68907561 69363240 455680 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.331898205950153 9 0.131767788172983 0.880344762232128 398 0.201091689487602 6 4 2 -6.7819236544683 LTS-016 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.125253224638641 39 0.156849864176026 1 NA NA -6.2211191447314 LTS-016 chr4 69434317 69512310 77994 * character(0) NA 0 NA 1.878 1 NA NA NA NA NA LTS-016 chr4 69512311 187631037 118118727 * c(SNHG8, FAM47E, SCOC-AS1, CLDN24, PP12613, MIR1243, MIR2054, MIR1305, MIR1973, CSN1S2BP, MIR3140, MIR4276, THAP9-AS1, MIR3945, MIR3684, MIR3688-1, LINC01095, LINC01094, LINC01088, LINC01207, APELA, LINC00989, LOC100506085, LOC100506122, LINC01093, LOC100506746, LOC100507053, GIMD1, SEC24B-AS1, MIR4799, MIR4450, MIR3688-2, MIR4451, FAM47E-STBD1, MIR5705, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, ENAM, STPG2-AS1, NA NA NA NA NA NA NA NA NA LTS-016 FAM13A, SPRY1, ANAPC10, CDS1, PGRMC2, SEC24B, CLGN, CXCL13, MAB21L2, PDLIM5, CENPE, RRH, UGT2B11, PLK4, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, HELQ, CYP2U1, DDIT4L, WDR17, CLCN3, PCAT4, ANTXR2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, LIN54, C4orf32, SPATA4, C4orf36, TRAM1L1, ENPP6, SLC9B2, CPE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ASB5, CSN1S1, CSN2, CSN3, SLC9B1, CTSO, ZNF827, SH3D19, PAQR3, MGAT4D, WWC2-AS2, FAM218A, THAP6, C4orf26, PPM1K, C4orf45, RASGEF1B, DCK, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, TIGD2, RASSF6, RBM46, SGMS2, SYNPO2, AFM, AFP, AGA, DMP1, DSPP, EDNRA, EGF, EIF4E, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, PRIMPOL, ENPEP, EREG, ETFDH, ALB, F11, FABP2, ACSL1, FAT1, FGA, FGB, FGF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 FGF5, FGG, HSPA4L, SEC31A, RUFY3, MMRN1, WDFY3, PALLD, TBC1D9, METAP1, KIAA0922, TRIM2, ANP32C, SLC7A11, CNOT6L, GAB1, C4orf22, EPGN, ELMOD2, NPNT, CCDC110, MFSD8, LOC256880, AMBN, NOCT, PARM1, FAM149A, RCHY1, FDCSP, ANKRD17, FBXO8, GC, NAP1L5, SMR3A, PPA2, DAPP1, GK2, DKK2, GK3P, INTU, NAAA, COQ2, ARFIP1, SULT1B1, PDLIM3, HPGDS, ZNF330, GLRB, GPM6A, LINC01091, CYP4V2, F11-AS1, RPL34-AS1, LINC01098, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 FAM13A-AS1, GPRIN3, COX18, RNF175, STPG2, CSN1S2AP, ANK2, GRIA2, GRID2, SLC25A4, CXCL1, CXCL2, CXCL3, GRSF1, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, H2AFZ, ANXA2P1, HADH, ANXA3, ANXA5, HMGB2, HNRNPD, HPGD, HTN1, HTN3, IBSP, CCDC158, LOC340017, CFI, PRSS48, SOWAHB, LRIT3, SLC10A6, HSD17B13, JCHAIN, ANKRD37, IL2, CXCL8, PCNAP1, IL15, ING2, CXCL10, IRF2, AREG, KLKB1, LOC389247, TRIM61, HELT, PRR27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 AMTN, CCSER1, LINC01061, C4orf3, FAM92A1P2, WDFY3-AS2, MAD2L1, SMAD1, MANBA, ART3, MGST2, CXCL9, AFF1, NR3C2, LINC00575, MTHFD2L, LOC441025, TMEM150C, GUSBP5, C4orf47, GALNTL6, MIR302B, MTNR1A, MTTP, MUC7, NDUFC1, ATOH1, NEK1, NFKB1, NKX6-1, NPY1R, NPY2R, NPY5R, CISD2, SPOCK3, MRPS18C, COPS4, AADAT, HSD17B11, LEF1, HERC5, FAM198B, PLAC8, LARP7, PDHA2, EMCN, MYOZ2, ASIC5, GALNT7, GATB, PF4, PF4V1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PITX2, PKD2, NUDT9, NUP54, PLRG1, CLDN22, EXOSC9, GAR1, UGT2B28, PCDH18, USP53, DKFZP434I0714, POU4F2, PPEF2, OTUD4, PPBP, TET2, DCHS2, PPID, ARHGEF38, ODAM, HPF1, HERC6, MCUB, MARCH1, BANK1, LARP1B, SDAD1, BBS7, NEIL3, FBXW7, PPP3CA, TMEM144, TMA16, UFSP2, ZGRF1, AP1AR, MAML3, BMP2K, DDX60, CDKN2AIP, TENM3, TMEM184C, SEPT11, LRP2BP, PRKG2, MAPK10, PDGFC, FSTL5, BDH2, SMARCAD1, MEPE, STOX2, PRDM8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 UTP3, INTS12, ANKRD50, UGT2A2, RNF150, KLHL8, PCDH10, CFAP97, FNIP2, SHROOM3, SH3RF1, METTL14, PTPN13, ENOPH1, OPRPN, OSTC, IL21, RAP1GDS1, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPL34, RPS3A, MSMO1, CXCL6, CXCL11, CXCL5, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, SLED1, HHIP, SNCA-AS1, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, MRPL1, BMP3, FLJ38576, BMPR1B, SNCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SPP1, SNORA24, STATH, SULT1E1, BTC, TACR3, MIR575, MIR577, MIR578, TDO2, TLL1, TLR2, TLR3, TRPC3, LOC728040, LINC00290, LOC728175, CETN4P, FAM160A1, MIR3945HG, UBE2D3, UCP1, UGT2B4, UGT2B7, UGT8, VEGFC, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, CENPU, THAP9, HAND2-AS1, GSTCD, MAP9, TNIP3, JADE1, SCD5, DNAJB14, GLRA3, WWC2, FRAS1, NAA15, ABHD18, ALPK1, CXXC4, CEP44, SETD7, PLA2G12A, CAMK2D, SLC25A31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RAB33B, ARHGAP24, CASP3, SNX25, TTC29, CASP6, SPARCL1, MND1, SLC10A7, TKTL2, C4orf17, QRFPR, FAM175A, KIAA1109, COL25A1, USP38, SMARCA5, SORBS2, MGARP, NAA11, GPAT3, CBR4, PRSS12, CABS1, FHDC1, USO1, UNC5C, LAMTOR3, PDE5A, SLC4A4, SAP30, INPP4B, CCNA2, HERC3, SNORD73A, STBD1, CDKL2, FLJ20021, CCNG2, PAPSS1, LOC90768, PRMT9, DDX60L, LRAT, NAF1, AIMP1, MOB1B, TIFA, NDST3, TRMT10A, TBCK, ABCG2, HAND2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SCARB2, ADAMTS3, RAPGEF2, MFAP3L, LRBA, SEC24D, G3BP2, HNRNPDL) 0.329852796562103 784 0.0966435347736759 0.88744308316109 46312 0.441144205599266 6 4 2 -8.26816576892247 LTS-016 NA NA NA NA LTS-016 chr4 188923866 190981509 2057644 * c(ZFP42, TRIML2, FRG1, TRIML1, LINC01060) 0.375001701498587 16 0.0958052712537259 1.39802423185687 313 0.78695472795834 8 5 3 -6.7571187791017 LTS-016 chr4 190981510 190981567 58 * character(0) NA 0 NA 4.46839417990903 2 3.616144078988 20 NA NA -5.76441052736338 LTS-016 chr5 140347 156976 16630 * PLEKHG4B 0 1 NA 0.90875907313442 47 0.909532858821822 6 6 0 -5.76444045243635 LTS-016 chr5 156977 678224 521248 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.33742451265718 27 0.0815598114821439 0.932826620564147 1013 0.291134917780283 6 4 2 -6.73747225141387 LTS-016 chr5 678225 712039 33815 * TPPP NA 0 NA 2.028 1 NA NA NA NA NA LTS-016 chr5 712040 770275 58236 * character(0) 0.447166633428647 5 0.029159903977894 1.51797469771353 66 0.578640293714921 10 5 5 -7.40494400182431 LTS-016 chr5 770276 795895 25620 * ZDHHC11 NA 0 NA 0.707 1 NA NA NA NA NA LTS-016 chr5 795896 2755485 1959590 * c(MIR4277, LOC100506688, MIR4457, MIR4635, SLC12A7, C5orf38, IRX2, SLC6A19, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, BRD9, TERT, SDHAP3, LOC728613, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.302712974241006 51 0.126268801356782 1.01177351537293 1470 0.598252483621267 7 5 2 -6.75865594382497 LTS-016 chr5 2755486 3600629 845144 * c(C5orf38, LINC01019, IRX1) 0 1 NA 1.08020538757905 33 0.917125525305379 7 7 0 -5.76469330996925 LTS-016 chr5 3600630 5486926 1886297 * c(ADAMTS16, ICE1, LINC01020, IRX1) 0.231898805757151 15 0.190942848592377 0.946987964488254 469 0.404789770347491 6 5 1 -6.76271604862082 LTS-016 chr5 5486927 6337241 850315 * c(ICE1, FLJ33360) 0.336 1 NA 0.947702367725109 43 0.331223715186067 6 6 0 -5.76472103170867 LTS-016 chr5 6337242 6756679 419438 * c(PAPD7, UBE2QL1, LINC01018, FLJ33360, NSUN2, SRD5A1, MED10) 0.352329862521471 16 0.080306807515511 0.931815922690015 404 0.247195811304226 6 4 2 -6.74460435839434 LTS-016 chr5 6756680 11384874 4628195 * c(SNORD123, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4636, MARCH6, ADCY2, PAPD7, C5orf49, FAM173B, CMBL, CTNND2, DAP, CCT5, LOC285692, LOC442132, MTRR, TAS2R1, ANKRD33B, LOC729506, FASTKD3, ROPN1L, SEMA5A) 0.352345142751518 32 0.169828753288565 1.23341876184764 1418 0.466859414841725 8 5 3 -6.74614788027832 LTS-016 chr5 11384875 11564995 180121 * CTNND2 0.477 1 NA 1.19691734798512 23 0.334319514161838 8 8 0 -5.76638512649719 LTS-016 chr5 11564996 32786389 21221394 * c(LOC100130744, CDH6, MIR4279, MIR4637, CDH9, CDH10, CDH12, CDH18, BASP1, SUB1, CTNND2, DNAH5, PDZD2, FBXL7, LOC285696, DROSHA, LOC340107, LOC401177, LINC01194, MARCH11, MYO10, NPR3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, C5orf22, ANKH, PRDM9, GOLPH3, LINC01021, TRIO, GUSBP1, LSP1P3, OTULIN, ZNF622) 0.440354336482299 64 0.117069034036156 1.21454313370487 3814 0.344157764649238 8 4 4 -6.86105764216841 LTS-016 chr5 32786390 32786920 531 * NPR3 0 1 NA 1.28649648323975 9 1.39685149930517 8 8 0 -5.76441025320737 LTS-016 chr5 32786921 33937709 1150789 * c(LOC340113, NPR3, RXFP3, TARS, ADAMTS12) 0.271833073800566 14 0.227973405524359 1.24874637752115 499 0.618937778893043 8 6 2 -6.73390884161721 LTS-016 chr5 33937710 33946555 8846 * c(SLC45A2, RXFP3) 0.441 1 NA 1.13970957436269 45 0.29880476210828 7 7 0 -5.7644708057966 LTS-016 chr5 33946556 36036085 2089530 * c(C1QTNF3, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, AMACR, RAI14, IL7R, SLC45A2, BRIX1, PRLR, RAD1, AGXT2, SPEF2) 0.4451389389181 36 0.0864061101601957 1.21146805839638 1770 0.35196189529968 8 4 4 -6.81862519997685 LTS-016 chr5 36036086 44304720 8268635 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MROH2B, EGFLAM, NADK2, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, NIPBL-AS1, LOC648987, SKP2, SLC1A3, C5orf42, MIR580, C6, C7, NA NA NA NA NA NA NA NA NA LTS-016 C9, ZNF131, CARD6, OSMR, LMBRD2, NUP155) 0.429068557795739 65 0.105613402868124 1.13517181139377 5242 0.314346950018318 7 4 3 -6.79959740577213 LTS-016 NA NA NA NA LTS-016 chr5 44304721 45696278 1391558 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.21312507104083 189 0.274267286233881 8 NA NA -5.77557960223756 LTS-016 chr5 49692017 49698180 6164 * EMB 0.421 1 NA 1.01418864233846 69 0.378739173960898 6 6 0 -5.76450178688241 LTS-016 chr5 49698181 51376921 1678741 * c(EMB, ISL1, LOC642366, PARP8) 0.433342222634897 5 0.010285912696499 1.10323871943929 358 0.346001418614398 8 4 4 -8.40582703543086 LTS-016 chr5 52083711 52098919 15209 * c(ITGA1, PELO) 0.0886804583013578 4 0.0196871362400257 0.555721939505558 78 0.140622456686958 2 2 0 -6.82077345303715 LTS-016 chr5 52098920 52099813 894 * ITGA1 0.037 1 NA 0.686313877879565 21 0.371785274689827 4 4 0 -5.76441666991166 LTS-016 chr5 52099814 68850398 16750585 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, FLJ31104, NA NA NA NA NA NA NA NA NA LTS-016 NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.0538676539136783 137 0.0336529148446908 0.604463995670998 7748 0.270819490215965 4 4 0 -7.61401329756467 LTS-016 NA NA NA NA LTS-016 chr5 68850399 69373289 522891 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.882638607468856 39 0.222985823457205 6 NA NA -5.80382966214776 LTS-016 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.005 1 NA NA NA NA NA LTS-016 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.362912425298661 59 0.180093885833991 2 NA NA -5.76449126184733 LTS-016 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.938 1 NA NA NA NA NA LTS-016 chr5 70357051 74074793 3717743 * c(GUSBP9, MIR4804, MIR4803, NSA2, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, FAM169A, GTF2H2, HEXB, TNPO1, MAP1B, NAIP, PMCHL2, BDP1, ANKRA2, MCCC2, ARHGEF28, LOC647859, BTF3, PTCD2, UTP15, GFM2, ENC1, CARTPT) 0.0460213077691032 39 0.0237643627996051 0.64472908228235 2099 0.22807476611237 4 4 0 -6.76731814619667 LTS-016 chr5 74074794 118969960 44895167 * c(ARRDC3-AS1, CKMT2-AS1, LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, STARD4-AS1, TMEM161B-AS1, MIR3977, LINC01023, EDIL3, COL4A3BP, NREP-AS1, LHFPL2, CDO1, POLR3G, CETN3, IQGAP2, CHD1, EPB41L4A-AS1, CKMT2, LYSMD3, AP3S1, SLCO6A1, JMY, POU5F2, POC5, STARD4, WDR36, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, ARSK, FAM81B, CCDC112, NA NA NA NA NA NA NA NA NA LTS-016 DMXL1, PAPD4, DCP2, LIX1, FAM151B, S100Z, DHFR, EFNA5, LINC01554, CMYA5, LVRN, F2R, F2RL1, F2RL2, FER, RHOBTB3, ELL2, SV2C, PPIP5K2, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, TNFAIP8, FAM169A, RNU5E-1, GLRX, KIAA0825, GPR150, DTWD2, NBPF22P, RGMB, DMGDH, HMGCR, RFESD, APC, HSD17B4, FAM170A, ANKRD34B, FAM174A, MTX3, SLCO4C1, TICAM2, KCNN2, LNPEP, MIR9-2, ARSB, MAN2A1, MCC, MEF2C, CRSP8P, NR2F1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MSH3, RGMB-AS1, PAM, TMED7, PCSK1, GCNT4, COMMD10, POLK, ERAP1, PGGT1B, EPB41L4A-AS2, GIN1, AGGF1, WDR41, TRIM36, RIOK2, FEM1C, SEMA6A, ARRDC3, RASA1, RASGRF2, RPS23, BHMT, EPB41L4A, ERAP2, TMEM232, ARL14EPL, LOC644936, LINC00461, FBXL17, YTHDC2, SNORA13, SRP19, SCARNA18, SNORA47, TBCA, MIR583, NR2F1, THBS4, LINC00992, ZBED3-AS1, ANKDD1B, XRCC4, ST8SIA4, REEP5, MCTP1, CAMK4, CAST, NUDT12, ATG10, SPATA9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TSSK1B, FAM172A, ADGRV1, ZCCHC9, SLF1, ZBED3, SPZ1, AP3B1, TSLP, PDE8B, CCNH, C5orf30, SLC25A46, ATG12, ATP6AP1L, NREP, RAB9BP1, HOMER1, SCAMP1, TTC37, ZFYVE16, PJA2) 0.0527960312718825 301 0.0350255088185107 0.603167947270429 17046 0.287017187648491 4 4 0 -8.57599740316785 LTS-016 NA NA NA NA LTS-016 chr5 118969961 120532671 1562711 * c(FAM170A, PRR16) NA 0 NA 0.694047666191751 67 0.28454145628315 4 NA NA -5.79588005685264 LTS-016 chr5 121187563 121297707 110145 * c(SRFBP1, FTMT) 0.445 1 NA 1.14372632097903 25 0.191020094928954 7 7 0 -5.76668753946821 LTS-016 chr5 121297708 129241363 7943656 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, SNCAIP) 0.441970585752481 63 0.0892159596439848 1.20154504406701 3115 0.325714864478053 8 4 4 -6.86521231812831 LTS-016 chr5 129241364 129243772 2409 * CHSY3 NA 0 NA 1.114 1 NA NA NA NA NA LTS-016 chr5 129243773 132533517 3289745 * c(MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, FSTL4, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, RAPGEF6, ZCCHC10, LOC553103, CDC42SE2, CCNI2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.441086246016151 80 0.0628783925274449 1.11813820794665 2952 0.447400642216382 7 4 3 -6.91213968898531 LTS-016 chr5 132533518 132535046 1529 * FSTL4 0.5 1 NA 1.46144934920513 33 0.755826524308644 9 9 0 -5.76441303218097 LTS-016 chr5 132535047 134028398 1493352 * c(MIR1289-2, MIR3661, SEC24A, FSTL4, JADE2, SAR1B, CDKL3, PPP2CA, C5orf15, SKP1, TCF7, UBE2B, VDAC1, CDKN2AIPNL) 0.297556059019908 9 0.224284108021748 1.14553950044359 1049 0.419946118895918 7 5 2 -6.7400001051524 LTS-016 chr5 134028399 134210932 182534 * c(SEC24A, C5orf24, TXNDC15, CAMLG, DDX46) 0.494 1 NA 1.08936669689664 451 0.2340259745998 7 7 0 -5.76476002300613 LTS-016 chr5 134210933 134331918 120986 * c(MIR4461, CATSPER3, TXNDC15, PCBD2) 0.432 1 NA 1.07002818338886 105 0.224491475808376 7 7 0 -5.76580652503439 LTS-016 chr5 134331919 134331921 3 * CATSPER3 0.482 1 NA 2.187 1 NA NA NA NA NA LTS-016 chr5 134331922 137087449 2755528 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.4491321069942 40 0.0797203083542868 1.23906778910933 1326 0.473519642622264 8 4 4 -6.845013598369 LTS-016 chr5 137087450 138754741 1667292 * c(KIF20A, BRD8, HNRNPA0, CTNNA1, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, PROB1, NPY6R, MZB1, PAIP2, FAM13B, FAM53C, REEP2, KDM3B, SIL1, SNHG4, WNT8A, NME5, CDC23, MYOT, MATR3, CDC25C, SLC23A1) 0.440972832624674 16 0.120292975688525 1.14548451826677 2329 0.294938599818577 7 4 3 -6.79795942074481 LTS-016 chr5 138754742 138773090 18349 * DNAJC18 0.464 1 NA 0.981311503671252 31 0.181365715008778 6 6 0 -5.76464822919599 LTS-016 chr5 138773091 140308701 1535611 * c(SRA1, LINC01024, APBB3, SLC35A4, ZMAT2, HBEGF, DNAJC18, HARS2, HARS, TMEM173, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, CXXC5, PFDN1, WDR55, ANKHD1, TMCO6, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2, PCDHA9) 0.25014874330142 9 0.241045177877048 1.17263522441882 2420 0.30583429088297 8 6 2 -6.77700069594645 LTS-016 chr5 140308702 140474845 166144 * c(PCDHB1, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.472 1 NA 1.19180231726335 211 0.214064179278955 8 8 0 -5.76973249349237 LTS-016 chr5 140474846 140553623 78778 * c(PCDHB5, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2) 0.471485880650207 8 0.0154775182580597 1.13610232904474 277 0.289866893662311 8 4 4 -10.6725312461515 LTS-016 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.357 1 NA NA NA NA NA LTS-016 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.326850151981429 3 0.12683190975986 0.416935400638534 62 0.592624579632824 6 4 2 -6.74708183734661 LTS-016 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.041 1 NA NA NA NA NA LTS-016 chr5 140559822 142660770 2100949 * c(GNPDA1, LOC100505658, ARHGAP26-AS1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, ARAP3, TAF7, LOC729080, NDFIP1, SPRY4, SLC25A2, NA NA NA NA NA NA NA NA NA LTS-016 PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.450194150320094 26 0.0970835405522164 1.19408518348929 3463 0.285712435791311 8 4 4 -6.84780907318632 LTS-016 NA NA NA NA LTS-016 chr5 142660771 143854604 1193834 * c(MIR5197, NR3C1, KCTD16, HMHB1, YIPF5) 0.426223163802058 5 0.0583120913704868 0.910574687974557 217 0.235273228531195 6 3 3 -6.78703026472418 LTS-016 chr5 143854605 143855031 427 * KCTD16 0.302 1 NA 1.1237535728528 11 0.365197431037464 7 7 0 -5.76441074528264 LTS-016 chr5 143855032 146435580 2580549 * c(PPP2R2B-IT1, TCERG1, GPR151, PRELID2, SH3RF2, PLAC8L1, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, GRXCR2) 0.276238981007508 9 0.103390038204848 0.913189343677141 945 0.245333840970308 6 4 2 -7.02210705524839 LTS-016 chr5 146435581 146657838 222258 * c(STK32A, PPP2R2B) 0.335 1 NA 0.822008675283956 25 0.219758958861749 5 5 0 -5.76533584863146 LTS-016 chr5 146657839 147499670 841832 * c(SPINK5, SCGB3A2, JAKMIP2-AS1, DPYSL3, STK32A, C5orf46, SPINK1, JAKMIP2) 0.38370015071841 50 0.0585444572046556 0.919414899794211 740 0.238979117698235 5 3 2 -6.89659814438994 LTS-016 chr5 147499671 147505116 5446 * SPINK5 0.331 1 NA 1.05249341661769 17 0.329198067502011 7 7 0 -5.7644786177653 LTS-016 chr5 147505117 154297592 6792476 * c(MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, SPINK5, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, ADRB2, SLC26A2, SLC36A1, FAT2, ABLIM3, HMGXB3, LARP1, GEMIN5, CCDC69, IL17B, GLRA1, GM2A, SLC36A3, GPX3, GRIA1, ANXA6, NDST1, HTR4, ARSI, IRGM, SAP30L-AS1, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, DCTN4, PDE6A, PDGFRB, GALNT10, RBM22, NMUR2, RPS14, NA NA NA NA NA NA NA NA NA LTS-016 SPINK9, SLC6A7, SPARC, TCOF1, CARMN, PCYOX1L, SH3TC2, SAP30L, CAMK2A, FBXO38, TIGD6, SPINK7, SMIM3, ZNF300, MYOZ3, CNOT8, HAND1, CD74) 0.310556049759819 152 0.0966122091731193 0.924154072104314 7071 0.601089869258139 6 4 2 -6.81040865022982 LTS-016 NA NA NA NA LTS-016 chr5 154297593 154299513 1921 * GEMIN5 NA 0 NA 0.751 1 NA NA NA NA NA LTS-016 chr5 154299514 166712094 12412581 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, NUDCD2, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, GEMIN5, HAVCR1, CYFIP2, MAT2B, LOC285626, LOC285627, LOC285629, KIF4B, MRPL22, HMMR, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, TENM2, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, CCNG1, TIMD4, PTTG1, MED7, CLINT1) 0.298096636294768 33 0.112336859826851 0.86656345669653 3787 0.272195102173555 5 4 1 -7.44935371461465 LTS-016 chr5 166712095 167899144 1187050 * c(WWC1, TENM2) 0.186701507696821 5 0.191256895300535 1.0317303614161 464 0.502992970018307 6 5 1 -6.74972707160869 LTS-016 chr5 167899145 175386652 7487508 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, WWC1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, RARS, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, PANK3, CPEB4, THOC3, STC2, FGF18, NA NA NA NA NA NA NA NA NA LTS-016 ATP6V0E1, BOD1, UBTD2, SFXN1) 0.291084771589699 68 0.13673558367143 0.916071176242991 4145 0.403219779008647 6 4 2 -6.8653033207135 LTS-016 NA NA NA NA LTS-016 chr5 175386653 175388460 1808 * THOC3 NA 0 NA 0.371195687352636 73 0.320809789802114 2 NA NA -5.76441687295908 LTS-016 chr5 175388461 175391941 3481 * THOC3 NA 0 NA 0.7 1 NA NA NA NA NA LTS-016 chr5 175391942 180374817 4982876 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-016 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.331339716699435 147 0.0993973964405479 0.929428189190297 7007 0.370765651682788 6 4 2 -6.75715635513811 LTS-016 NA NA NA NA LTS-016 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.948 1 NA NA NA NA NA LTS-016 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) NA 0 NA 1.66384014425846 62 0.331402865608742 11 NA NA -5.76452908706139 LTS-016 chr5 180429800 180631828 202029 * c(BTNL3, BTNL9, OR2V1, OR2V2, TRIM7) 0.367308284405703 14 0.0334842098263093 0.887288845246603 292 0.404002114537848 8 5 3 -6.84744561790907 LTS-016 chr5 180631829 180688111 56283 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.924406692460894 249 0.176381625593119 6 NA NA -5.76559663016902 LTS-016 chr6 203389 312023 108635 * DUSP22 0.265 1 NA 0.982869237953901 25 0.308313017348711 6 6 0 -5.76495766138498 LTS-016 chr6 312024 3323761 3011738 * c(LOC100507194, GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, SLC22A23, BPHL, TUBB2A, RIPK1, FOXQ1) 0.426505084393443 87 0.0782720223926872 1.00899268618858 1738 0.434390055847268 6 3 3 -6.77541551660487 LTS-016 chr6 3323762 3456721 132960 * SLC22A23 NA 0 NA 1.08935057741993 47 0.326671537246503 7 NA NA -5.76454123332245 LTS-016 chr6 3456722 3722906 266185 * c(PXDC1, SLC22A23) NA 0 NA 3.114 1 NA NA NA NA NA LTS-016 chr6 3722907 4031998 309092 * c(PXDC1, FAM50B, PRPF4B) 0.287 1 NA 1.58843429428706 117 0.449160320340856 10 10 0 -5.7649898099328 LTS-016 chr6 4031999 29858253 25826255 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, NA NA NA NA NA NA NA NA NA LTS-016 KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, ZSCAN23, NKAPL, TOB2P1, FAM217A, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, STMND1, CASC15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 C6orf201, ERVFRD-1, MAK, NEDD9, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, LYRM4, MRS2, RREB1, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, CDYL, LY86, EEF1E1, FAM65B, ZSCAN12, KIAA0319, NUP153) 0.289833017062855 326 0.0722088098039856 1.54169065525482 13599 0.569178016317286 10 7 3 -6.77157830415213 LTS-016 NA NA NA NA LTS-016 chr6 29858254 29910176 51923 * character(0) 0.304 1 NA 0.921414770268083 5 0.498299909692948 6 6 0 -5.76457551604156 LTS-016 chr6 29910177 29910396 220 * character(0) 0.307 1 NA 1.30415297073402 5 0.918747897956779 8 8 0 -5.7644103912784 LTS-016 chr6 29910397 29910429 33 * character(0) 0.394 1 NA 0.296 1 NA NA NA NA NA LTS-016 chr6 29910430 29911239 810 * character(0) 0.338746259041686 29 0.06953258795829 0.742196408806839 41 0.752135666602515 9 6 3 -6.73339559453504 LTS-016 chr6 29911240 29911241 2 * character(0) NA 0 NA 1.457 1 NA NA NA NA NA LTS-016 chr6 29911242 29913067 1826 * character(0) 0.370737479894458 8 0.0651568163301869 1.22149480992478 19 0.549087456684014 16 10 6 -6.73497383931915 LTS-016 chr6 29913068 29913374 307 * character(0) 0.3 1 NA 1.54856970169002 5 0.192072382189632 10 10 0 -5.7644101351121 LTS-016 chr6 29913375 31976515 2063141 * character(0) 0.306245917441139 195 0.0681545269614161 1.57906730884881 6222 0.406207439349855 10 7 3 -6.73616149825203 LTS-016 chr6 31976516 31976549 34 * character(0) 0.279 1 NA 3.081 1 NA NA NA NA NA LTS-016 chr6 31976550 31996524 19975 * character(0) 0.323231012159334 2 0.0975807358037436 2.40874466353182 48 1.24923101860889 19 13 6 -6.73435154802303 LTS-016 chr6 31996525 31996619 95 * character(0) NA 0 NA 1.767 1 NA NA NA NA NA LTS-016 chr6 31996620 32270363 273744 * character(0) 0.316400904411991 49 0.0593168879601662 1.68772001464446 1243 0.471868744583834 10 7 3 -6.75064881037903 LTS-016 chr6 32270364 32270430 67 * character(0) NA 0 NA 1.43 1 NA NA NA NA NA LTS-016 chr6 32270431 32549420 278990 * HLA-DRB5 0.318336726230734 62 0.0773866992207813 1.50461223282581 407 0.842740783393864 10 7 3 -6.74405251062126 LTS-016 chr6 32549421 32557584 8164 * HLA-DRB5 0.259955372971541 8 0.0650833257118464 0.951833965210625 40 0.836465457085608 8 6 2 -6.73502631835119 LTS-016 chr6 32557585 32632794 75210 * c(HLA-DQA1, HLA-DRB5) 0.283713999467976 70 0.0721752582877449 2.09931115319528 193 1.94295680991869 18 13 5 -6.73391784614081 LTS-016 chr6 32632795 32634285 1491 * character(0) NA 0 NA 1.459 1 NA NA NA NA NA LTS-016 chr6 32634286 32917544 283259 * character(0) 0.345726478797835 34 0.0541363236004887 1.4859245293152 548 0.591142629242662 9 6 3 -6.74358031561755 LTS-016 chr6 32917545 32939894 22350 * character(0) 0.342 1 NA 1.51122319092789 49 0.471782312269195 10 10 0 -5.76444693908578 LTS-016 chr6 32939895 33048689 108795 * character(0) 0.401473151860265 76 0.0504927717599262 1.51774608321824 343 2.12937434016513 12 7 5 -6.73393314460261 LTS-016 chr6 33048690 33054721 6032 * character(0) 0.424255519680939 46 0.0418913709076433 2.01682117756598 93 14.116738731993 19 10 9 -6.76437575270256 LTS-016 chr6 33054722 33054807 86 * character(0) 0.301 1 NA 1.39988298460996 3 0.319038137741138 9 9 0 -5.76441013480238 LTS-016 chr6 33054808 35748945 2694138 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.304158077174847 91 0.0794646295557171 1.60076822948161 4312 0.494950201436047 10 7 3 -6.74149511321506 LTS-016 chr6 35748946 35765131 16186 * c(CLPS, CLPSL1) 0.408 1 NA 0.990614213113333 40 0.561124164124218 6 6 0 -5.76445034616289 LTS-016 chr6 35765132 35773087 7956 * LHFPL5 NA 0 NA 1.659 1 NA NA NA NA NA LTS-016 chr6 35773088 36653900 880813 * c(MIR3925, CDKN1A, STK38, SLC26A8, MAPK14, KCTD20, PXT1, LHFPL5, BRPF3, PNPLA1, C6orf222, ETV7, MAPK13, SRSF3, SRPK1) 0.325280888901444 13 0.0468268770072958 1.49621670271202 1194 0.379852836644273 9 6 3 -6.80108949344856 LTS-016 chr6 36653901 37349033 695133 * c(CDKN1A, TMEM217, FGD2, PI16, C6orf89, MTCH1, RAB44, PPIL1, PIM1, TBC1D22B, CPNE5, RNF8) 0.324931205050114 24 0.07702606372361 1.58250839454692 958 0.423364009086876 10 7 3 -6.76316912231298 LTS-016 chr6 37349034 37361341 12308 * RNF8 0 1 NA 1.65932229185833 59 0.991039733197491 11 11 0 -5.76441401091093 LTS-016 chr6 37361342 51618183 14256842 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR4647, MIR4641, MIR4642, MIR4462, RCAN2, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, BTBD9, FOXP4, KLHDC3, TAF8, C6orf141, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, ADGRF2, TSPO2, UNC5CL, ENPP4, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, CD2AP, ZNF318, DEFB110, NA NA NA NA NA NA NA NA NA LTS-016 DEFB112, DEFB113, DEFB114, YIPF3, USP49, MDGA1, ADGRF1, GNMT, TNFRSF21, GLO1, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, TREML1, TREML3P, SLC35B2, GLYATL3, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MUT, NFKBIE, NFYA, MRPL2, CYP39A1, PEX6, PGC, PGK2, PKHD1, CLIC5, TREM2, TREM1, POLH, GTPBP2, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, SAYSD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TRERF1, LRFN2, AARS2, XPO5, PTK7, ENPP5, PRPH2, RHAG, ZFAND3, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, TFAP2B, BYSL, CRISP2, TDRG1, VEGFA, PLA2G7, TFEB, TREML2, TFAP2D, KCNK16, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.280601741386972 175 0.118855558044885 1.61538488065482 11656 0.543326379273627 11 8 3 -6.80335331171871 LTS-016 NA NA NA NA LTS-016 chr6 51618184 51799061 180878 * PKHD1 NA 0 NA 1.42437395087894 97 0.278300554945838 9 NA NA -5.76480535008713 LTS-016 chr6 51799062 51824637 25576 * PKHD1 NA 0 NA 1.268 1 NA NA NA NA NA LTS-016 chr6 51824638 51917968 93331 * PKHD1 0.463 1 NA 1.11906454688041 109 0.245987657809832 7 7 0 -5.76458302838471 LTS-016 chr6 51917969 57372361 5454393 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, BEND6, GSTA5, FAM83B, ICK, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, RAB23, PKHD1, HMGCLL1, LRRC1, PRIM2, KIAA1586, ELOVL5, RPS16P5, BMP5, DST, LOC730101, GSTA7P, COL21A1, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.425815905837036 111 0.0860369052102007 1.08096455689786 3927 0.319925242785887 7 4 3 -6.77753548489014 LTS-016 chr6 57372362 57372365 4 * PRIM2 0.245 1 NA 2.646 1 NA NA NA NA NA LTS-016 chr6 57372366 57512565 140200 * PRIM2 0.340579574621037 30 0.0702943237681606 1.49637033733027 76 1.18963593981447 9 6 3 -6.73353901668956 LTS-016 chr6 57512566 58445634 933069 * c(GUSBP4, PRIM2) NA 0 NA 1.10488933049141 21 0.240435626470352 7 NA NA -5.76441834266997 LTS-016 chr6 62390154 62407067 16914 * KHDRBS2 0.401 1 NA 1.23424720523251 23 0.48330589581838 8 8 0 -5.76441925648968 LTS-016 chr6 62407068 66801673 4394606 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, PTP4A1) 0.445233534622981 21 0.037818425844201 1.10083643346125 872 0.369362153851853 7 4 3 -7.30787363794335 LTS-016 chr6 66801674 69758072 2956399 * ADGRB3 0.336 1 NA 1.11860586550462 111 0.450383852302027 7 7 0 -5.76594698921509 LTS-016 chr6 69758073 71266978 1508906 * c(COL9A1, COL19A1, LMBRD1, FAM135A, ADGRB3) 0.265005458043348 9 0.214880651628862 1.10695149157751 844 0.340249107070773 7 5 2 -6.74730069414786 LTS-016 chr6 71266979 71267329 351 * FAM135A 0.4 1 NA 0.721391825843155 5 0.277978776168254 4 4 0 -5.76443259392807 LTS-016 chr6 71267330 73839456 2572127 * c(MIR4282, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, KCNQ5, FAM135A, SMAP1, OGFRL1, LINC00472) 0.458347537439811 12 0.038650238150507 1.1158420757456 711 0.305910161157086 8 4 4 -7.63196395627546 LTS-016 chr6 73839457 73839459 3 * KCNQ5 0 1 NA 6.03 1 NA NA NA NA NA LTS-016 chr6 73839460 74117223 277764 * c(KHDC1L, KCNQ5-AS1, KHDC3L, DPPA5, NA, OOEP, DDX43, KCNQ5, KHDC1) 0.345202866892471 10 0.186071939492946 1.13261697670641 300 0.655266587829698 6 4 2 -6.74436219739871 LTS-016 chr6 74117224 74123363 6140 * DDX43 0.489 1 NA 1.03299987266127 23 0.396664128489128 7 7 0 -5.76451321486467 LTS-016 chr6 74123364 83838673 9715310 * c(HMGN3-AS1, LOC100506804, MB21D1, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, EEF1A1, DOPEY1, MTO1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, MYO6, PHIP, DDX43, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.436027849252993 70 0.0705351563518044 1.10399701144854 3377 0.338653451907273 7 4 3 -6.83723504359066 LTS-016 chr6 83838674 83863583 24910 * DOPEY1 0.371 1 NA 1.13774708188442 125 0.220214427173798 7 7 0 -5.76469167662148 LTS-016 chr6 83863584 87879526 4015943 * c(SYNCRIP, CGA, MRAP2, RWDD2A, RIPPLY2, PRSS35, CEP162, DOPEY1, ZNF292, SNORD50A, HTR1E, SNHG5, ME1, NT5E, CYB5R4, PGM3, SNX14, SNORD50B, TBX18, SNAP91) 0.335449023684261 18 0.180988615898811 1.09790314041704 1492 0.310519637127852 7 5 2 -6.75918840066013 LTS-016 chr6 87879527 87965528 86002 * ZNF292 0.458 1 NA 1.12230514980176 63 0.259005106438638 7 7 0 -5.76462107211586 LTS-016 chr6 87965529 88385309 419781 * c(SLC35A1, CFAP206, C6orf163, ZNF292, ORC3, GJB7, AKIRIN2, RARS2, SMIM8, LINC01590) 0.437608439923193 27 0.0429717988752565 1.07950429112921 707 0.257779295146929 6 3 3 -6.95765555483477 LTS-016 chr6 88385310 88852043 466734 * c(CNR1, AKIRIN2, SPACA1) 0 1 NA 1.02306061430811 151 0.583340378033778 6 6 0 -5.76825081146492 LTS-016 chr6 88852044 99846411 10994368 * c(MIR2113, MIR4464, MIR4643, FUT9, PNRC1, KLHL32, CNR1, PM20D2, SRSF12, EPHA7, ANKRD6, MDN1, UFL1, MMS22L, GABRR1, GABRR2, FBXL4, NDUFAF4, UBE2J1, COQ3, POU3F2, LYRM2, RRAGD, BACH2, TSG1, MAP3K7, MANEA, GPR63, FAXC, GJA10, RNGTT, FHL5, CASP8AP2) 0.349056903369548 28 0.184429059647139 1.09359981216363 3361 0.300533398577565 7 5 2 -6.78484038226539 LTS-016 chr6 99846412 99847260 849 * character(0) 0.452 1 NA 0.905935962325578 19 0.196770668308142 6 6 0 -5.76444739431291 LTS-016 chr6 99847261 121768057 21920797 * c(LIN28B-AS1, TRAPPC3L, TSTD3, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, ASCC3, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, PNISR, AMD1, GJA1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, NA NA NA NA NA NA NA NA NA LTS-016 OSTM1, GRIK2, DSE, HDAC2, RSPH4A, KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, PRDM13, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SIM1, SMPD2, MIR548B, NR2E1, TSPYL1, MCHR2-AS1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, MCHR2, RTN4IP1, USP45, DDO, SLC22A16, SNX3, CD164, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 WISP3, CCNC, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.41749097209139 205 0.117802303608772 1.08741008148844 10184 0.337407798996463 7 4 3 -6.7643376835065 LTS-016 NA NA NA NA LTS-016 chr6 121768058 121768171 114 * GJA1 NA 0 NA 1.213 1 NA NA NA NA NA LTS-016 chr6 121768172 123538035 1769864 * c(TRDN, SMPDL3A, CLVS2, FABP7, GJA1, HSF2, PKIB, SERINC1) 0.437562964601105 6 0.0345350063944784 1.18409971689655 450 0.30496464311638 8 4 4 -7.02493220837337 LTS-016 chr6 123538036 123538978 943 * TRDN 0 1 NA 1.31733698551126 20 1.09773431259692 8 8 0 -5.7644113384403 LTS-016 chr6 123538979 125145374 1606396 * c(TRDN, NKAIN2) 0.291848471098469 13 0.213610056903359 1.24007079803458 325 0.540198060877914 8 6 2 -6.74413587327256 LTS-016 chr6 125145375 125402711 257337 * c(RNF217, NKAIN2, RNF217-AS1) 0.471 1 NA 1.23282498498399 185 0.260934214012466 8 8 0 -5.76496502189219 LTS-016 chr6 125402712 126248851 846140 * c(NCOA7, RNF217, HEY2, HDDC2, LOC643623, TPD52L1) 0.463052864186268 5 0.02876977580726 1.21191695560287 513 0.432280009698042 8 4 4 -8.08850928758562 LTS-016 chr6 126248852 144081609 17832758 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, MIR4465, MIR5695, CITED2, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, ADAT2, TAAR1, NCOA7, HINT3, CTGF, LOC153910, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, HEBP2, FUCA2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, HIVEP2, TAAR6, SLC35D3, IFNGR1, ECT2L, C6orf58, NA NA NA NA NA NA NA NA NA LTS-016 ARG1, HMGA1P7, CENPW, SOGA3, THEMIS, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, IL20RA, AHI1, VNN3, ECHDC1, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, TRMT11, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, OR2A4, RNF146, TAAR8, STX7, L3MBTL3, RSPO3, REPS1, PEX3, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PHACTR2, BCLAF1) 0.404561484756092 139 0.135794087111566 1.11938510529208 8156 0.416171701104228 7 4 3 -6.74514323944719 LTS-016 NA NA NA NA LTS-016 chr6 144081610 144151586 69977 * PHACTR2 NA 0 NA 1.06972632945373 180 0.239269372765587 7 NA NA -5.76513412533162 LTS-016 chr6 144151587 144416232 264646 * c(ZC2HC1B, PLAGL1, HYMAI, SF3B5, LTV1, PHACTR2) 0.013 1 NA 0.676306383309956 181 0.177149325911683 4 4 0 -5.76792695350578 LTS-016 chr6 144416233 167584309 23168077 * c(UST-AS1, LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, LOC100507557, CAHM, MIR4466, RAET1E-AS1, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, PDE10A, RAB32, KATNA1, FGFR1OP, SFT2D1, GINM1, TAGAP, CCR6, STXBP5, PACRG, RAET1E, CNKSR3, RAET1L, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, TAB2, SASH1, SYNE1, SHPRH, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, NA NA NA NA NA NA NA NA NA LTS-016 GRM1, ZC3H12D, IGF2R, NUP43, RAET1G, SUMO4, SAMD5, IYD, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, PCMT1, TFB1M, SNX9, MPC1, PLG, MTRF1L, RMND1, AGPAT4, TULP4, PLEKHG1, ARID1B, TMEM181, ZBTB2, RPS6KA2, RPS18P9, RAET1K, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, KATNBL1P6, STXBP5-AS1, TMEM242, LOC729603, UTRN, EZR, VIP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ULBP3, EPM2A, ARMT1, ZDHHC14, ADGB, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, PPP1R14C, SF3B5, RSPH3, FBXO30, FNDC1, LRP11, SERAC1, PPIL4, RNASET2, STX11, SYNJ2, LINC00473, LATS1, SYTL3, QKI, WTAP, AKAP12) 0.0488429381113404 259 0.0277924489904243 0.663517285322804 11964 0.385165608424477 4 4 0 -6.73861278855153 LTS-016 NA NA NA NA LTS-016 chr6 167584310 167587493 3184 * TCP10L2 0.374 1 NA 1.08125484895287 13 0.819598119155405 7 7 0 -5.76441135314236 LTS-016 chr6 167587494 167587642 149 * TCP10L2 NA 0 NA 0.856224451577726 5 0.164081382246738 5 NA NA -5.76442165224303 LTS-016 chr6 167587643 167590506 2864 * TCP10L2 NA 0 NA 0.291 1 NA NA NA NA NA LTS-016 chr6 167590507 167593453 2947 * TCP10L2 0 1 NA 0.402592778664003 48 0.363386386953893 2 2 0 -5.76456192063964 LTS-016 chr6 167593454 167593466 13 * TCP10L2 NA 0 NA 0.643 1 NA NA NA NA NA LTS-016 chr6 167593467 168377309 783843 * c(HGC6.3, LINC01558, TCP10L2, AFDN, UNC93A, AFDN-AS1, TCP10, TTLL2) 0.207677944348645 14 0.125281046688398 0.697829251897888 749 0.292396997434764 5 4 1 -6.85805036980721 LTS-016 chr6 168377310 168436663 59354 * c(HGC6.3, KIF25) 0.041 1 NA 0.759475833313807 27 0.333147234375553 5 5 0 -5.76559646170832 LTS-016 chr6 168436664 170070748 1634085 * c(DACT2, WDR27, KIF25, SMOC2, THBS2, FRMD1) 0.0454197799093123 24 0.0428962347592623 0.715016654603325 692 0.23918702586028 4 4 0 -6.85226063416986 LTS-016 chr6 170070749 170890384 819636 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.0597862946324363 23 0.0191749795800995 0.631833106530122 637 0.498520330898654 3 3 0 -6.85249758389389 LTS-016 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.597041768492522 45 0.137849042745529 4 NA NA -5.76539033904864 LTS-016 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.079 1 NA 0.640259865897324 125 0.157243065594065 4 4 0 -5.76711079257145 LTS-016 chr7 331087 5427950 5096864 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ZNF890P, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, NA NA NA NA NA NA NA NA NA LTS-016 EIF3B, ZFAND2A, COX19, AP5Z1) 0.0624560086432524 147 0.0497591712030521 0.673957565784998 4756 0.259812440114998 4 4 0 -6.79562639016038 LTS-016 NA NA NA NA LTS-016 chr7 5427951 5770330 342380 * c(RNF216-IT1, RNF216, ACTB, FSCN1, MIR589, FBXL18, TNRC18) 0.486 1 NA 0.638972320588674 397 0.181472490832318 4 4 0 -5.7701745470945 LTS-016 chr7 5770331 5938049 167719 * c(ZNF815P, RNF216, OCM) NA 0 NA 0.595165037286982 92 0.23181946032089 4 NA NA -5.78361558255387 LTS-016 chr7 5938050 5958596 20547 * CCZ1 0.244 1 NA 0.173040865982525 50 0.136046548156527 1 1 0 -5.7937168347014 LTS-016 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.043 1 NA NA NA NA NA LTS-016 chr7 5959444 6006781 47338 * c(RSPH10B, CCZ1) 0.120131945148245 3 0.255489725820824 1.03563832975887 71 0.684661675030473 9 8 1 -6.73935668438811 LTS-016 chr7 6006782 6012853 6072 * RSPH10B NA 0 NA 0.476 1 NA NA NA NA NA LTS-016 chr7 6012854 6781431 768578 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.0565983763086427 5 0.0367246511215559 0.612801003720612 1264 0.170931271631777 4 4 0 -6.83514453065363 LTS-016 chr7 6781432 6785686 4255 * PMS2CL NA 0 NA 0.047 1 NA NA NA NA NA LTS-016 chr7 6785687 6805469 19783 * c(PMS2CL, RSPH10B2) 0.464 1 NA 0.371525070538003 40 0.26472313064301 2 2 0 -5.76452620090276 LTS-016 chr7 6805470 6819291 13822 * RSPH10B2 NA 0 NA 0.157 1 NA NA NA NA NA LTS-016 chr7 6819292 6844723 25432 * c(CCZ1B, RSPH10B2) NA 0 NA 0.156300033783684 51 0.210487944790101 1 NA NA -5.79775520511833 LTS-016 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.751 1 NA NA NA NA NA LTS-016 chr7 6845571 6865838 20268 * CCZ1B 0.349096013917342 3 0.230362757406661 1.44133706128184 39 0.624242311036339 9 6 3 -6.73417449057635 LTS-016 chr7 6865839 6865853 15 * CCZ1B 0.448 1 NA 0.295 1 NA NA NA NA NA LTS-016 chr7 6865854 7283688 417835 * c(LOC100131257, CCZ1B, C1GALT1) 0.048 1 NA 0.598026489884494 71 0.289757136910106 4 4 0 -5.79216806030487 LTS-016 chr7 7283689 30544313 23260625 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, THSD7A, DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, NA NA NA NA NA NA NA NA NA LTS-016 ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.0506493483155215 186 0.0317647672102251 0.622362096231893 9446 0.335298264712422 4 4 0 -7.1088698053258 LTS-016 NA NA NA NA LTS-016 chr7 30544314 32526412 1982099 * c(LOC100130673, INMT-FAM188B, PPP1R17, INMT, ADCYAP1R1, CRHR2, CCDC129, LSM5, GARS, GHRHR, AQP1, LOC401320, PDE1C, NEUROD6, GGCT, FAM188B) 0.0566314540012838 44 0.0283671470492271 0.711793753371517 1346 0.300349904346327 4 4 0 -6.84644525257547 LTS-016 chr7 32526413 41726549 9200137 * c(DPY19L1P1, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, FKBP9, MPLKIP, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.0540237347093331 106 0.0300008086144393 0.616803463919911 3646 0.365624092274215 4 4 0 -6.91852550854045 LTS-016 chr7 41726550 57531696 15805147 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, C7orf57, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HPVC1, HUS1, SEPT14, IGFBP1, IGFBP3, NA NA NA NA NA NA NA NA NA LTS-016 ZNF713, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, PSPH, PURB, MYL7, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CCT6A, ZNF479, TBRG4, STK17A, H2AFV NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ) 0.0506477898331223 145 0.0261230381580199 0.647678550829521 7763 0.351584185257408 4 4 0 -6.7555395330988 LTS-016 NA NA NA NA LTS-016 chr7 57531697 57533232 1536 * ZNF716 NA 0 NA 0.821999264969187 23 0.269621898924117 5 NA NA -5.76441437729065 LTS-016 chr7 62758725 63673608 914884 * c(LINC01005, ZNF727, ZNF733P, ZNF735) 0.417 1 NA 0.966017951168532 108 0.572461659797743 6 6 0 -5.76461152925465 LTS-016 chr7 63673609 64639874 966266 * c(LOC100128885, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.31382516506977 22 0.0907360951388088 0.867155552833724 513 0.246866496972771 6 4 2 -6.8805400758277 LTS-016 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.579 1 NA NA NA NA NA LTS-016 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) 0.365774344411868 2 0.0289913780286485 0.550001991818147 93 0.130172537173995 3 2 1 -6.97483134920536 LTS-016 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.919 1 NA NA NA NA NA LTS-016 chr7 65159973 66774604 1614632 * c(MIR4650-2, VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, TPST1) 0.354408481379928 30 0.0480283560878961 0.913644068069727 887 0.245749818646847 6 4 2 -6.80171028397223 LTS-016 chr7 66774605 70229715 3455111 * c(AUTS2, STAG3L4) 0.034 1 NA 0.925002376293716 103 0.260518821121211 6 6 0 -5.79634535719333 LTS-016 chr7 70229716 70231320 1605 * AUTS2 NA 0 NA 0.94421393176449 14 0.184234978960369 6 NA NA -5.76441412583559 LTS-016 chr7 70231321 87029067 16797747 * c(POM121C, PMS2P9, LOC100133091, MIR548M, MIR4284, MIR3914-1, MIR3914-2, APTR, MAGI2-AS3, MIR4651, MIR4650-1, MIR548AU, MAGI2-AS2, CCL26, SEMA3A, SEMA3C, FGL2, TP53TG1, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, KIAA1324L, SEMA3D, POMZP3, NSUN5P2, AUTS2, TBL2, PCLO, GNAI1, GRM3, GTF2I, GTF2IP1, HGF, HIP1, HSPB1, GNAT3, TRIM73, NA NA NA NA NA NA NA NA NA LTS-016 NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, MLXIPL, STYXL1, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, CROT, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, WBSCR17, NCF1, NCF1B, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, CACNA2D1, TMEM243, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, CD36, GTF2IRD1, SEMA3E, MAGI2, POM121, DMTF1) 0.061980565103014 73 0.0545474916309338 0.648786580528118 7315 0.21397606181747 4 4 0 -6.8133472799675 LTS-016 NA NA NA NA LTS-016 chr7 87029068 87038697 9630 * c(ABCB4, CROT) NA 0 NA 0.174538340397379 39 0.178393668454543 1 NA NA -5.77178380660387 LTS-016 chr7 87038698 87041224 2527 * ABCB4 NA 0 NA 1.047 1 NA NA NA NA NA LTS-016 chr7 87041225 94297814 7256590 * c(MIR4652, LOC101409256, AKAP9, CDK6, BET1, DBF4, COL1A2, RUNDC3B, CYP51A1, SAMD9L, C7orf62, ZNF804B, PEG10, HEPACAM2, FAM133B, STEAP2, STEAP1, GNG11, GNGT1, LRRD1, DPY19L2P4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, ANKIB1, SAMD9, VPS50, SLC25A40, MIR489, GATAD1, CASD1, SRI, MIR653, STEAP4, MTERF1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, GTPBP10, KRIT1, SGCE, CLDN12) 0.0489221495258583 60 0.037029210488188 0.608426278974304 5029 0.200429773733232 4 4 0 -7.34888216857267 LTS-016 chr7 94297815 96339206 2041392 * c(LOC100506136, SLC25A13, DYNC1I1, PEG10, C7orf76, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, MIR591, SHFM1) NA 0 NA 0.635825665636861 949 0.154245222489868 4 NA NA -5.82806404782021 LTS-016 chr7 96339207 96634852 295646 * DLX6-AS1 NA 0 NA 0.796 1 NA NA NA NA NA LTS-016 chr7 96634853 96639753 4901 * c(DLX6, DLX6-AS1) 0.317 1 NA 0.920942803302799 41 0.218463584619675 6 6 0 -5.76449364346472 LTS-016 chr7 96639754 99816272 3176519 * c(GS1-259H13.2, MIR3609, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, BHLHA15, DLX5, DLX6, ZSCAN25, FAM200A, GPC2, TMEM130, LMTK2, ZKSCAN5, CNPY4, MBLAC1, BRI3, TECPR1, PTCD1, DLX6-AS1, ZNF789, GJC3, GATS, MGC72080, LAMTOR4, KPNA7, MIR106B, MIR25, MIR93, MCM7, ASNS, NPTX2, OCM2, C7orf43, BAIAP2L1, AZGP1, SDHAF3, SMURF1, AZGP1P1, CYP3A43, NA NA NA NA NA NA NA NA NA LTS-016 TAC1, TAF6, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.312543417577593 54 0.100263003203179 0.926163561455114 4105 0.271153071952175 6 4 2 -6.81117648823544 LTS-016 NA NA NA NA LTS-016 chr7 99816273 99817353 1081 * c(GATS, PVRIG) NA 0 NA 1.063 1 NA NA NA NA NA LTS-016 chr7 99817354 100486019 668666 * c(PCOLCE-AS1, SAP25, POP7, EPHB4, EPO, PPP1R35, NYAP1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, C7orf61, LRCH4, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, MEPCE, SLC12A9, MOSPD3, GIGYF1, TFR2, TRIP6, ZAN, PVRIG, TSC22D4) 0.308479507740129 13 0.0971878303028438 1.00815193976119 2023 1.87585817814306 7 5 2 -6.74078519577802 LTS-016 chr7 100486020 100549499 63480 * c(UFSP1, ACHE, SRRT) NA 0 NA 1.03284475931477 102 0.165457483947901 7 NA NA -5.77055774890943 LTS-016 chr7 100549500 100549512 13 * character(0) NA 0 NA 8.121 1 NA NA NA NA NA LTS-016 chr7 100549513 100549650 138 * character(0) 0.401 1 NA 4.25637676066311 8 2.94212947357619 20 20 0 -5.76441122523524 LTS-016 chr7 100549651 100550504 854 * character(0) 0.377931320578446 25 0.0918563189624608 2.45657921539149 48 1.44452362512563 13 8 5 -6.73330544478839 LTS-016 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.421 1 NA NA NA NA NA LTS-016 chr7 100550727 100551183 457 * character(0) 0.278549951638235 8 0.119122985667275 0.859458501463354 43 0.51285402325558 4 3 1 -6.73369588744816 LTS-016 chr7 100551184 100551220 37 * character(0) 0.373 1 NA 3.128 1 NA NA NA NA NA LTS-016 chr7 100551221 100552795 1575 * character(0) 0.342886627457234 59 0.0748181742970462 2.64839989936272 93 2.1041977934922 6 4 2 -6.73326782593531 LTS-016 chr7 100552796 100696446 143651 * c(MUC12, MUC17) 0.321529275309181 47 0.123781868507964 1.21956238855242 458 1.21054545867401 10 7 3 -6.74362103365553 LTS-016 chr7 100696447 100701610 5164 * MUC17 0.377 1 NA 1.01472305423071 21 0.234097873304552 6 6 0 -5.76461467100373 LTS-016 chr7 100701611 102121432 1419822 * c(LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.330624166746657 44 0.0881828384784373 0.993760322172453 1693 0.295994736961272 6 4 2 -6.7588475932539 LTS-016 chr7 102121433 102136562 15130 * RASA4B NA 0 NA 0.664 1 NA NA NA NA NA LTS-016 chr7 102136563 102343863 207301 * c(RASA4B, SPDYE2B, RASA4, POLR2J2, POLR2J3) 0.436 1 NA 0.652802105882201 39 0.931728893023323 4 4 0 -5.76442174174808 LTS-016 chr7 102343864 102343928 65 * RASA4 NA 0 NA 0.869 1 NA NA NA NA NA LTS-016 chr7 102343929 123179331 20835403 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, BMT2, FEZF1-AS1, IQUB, C7orf66, RNF133, THAP5, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, TSPAN12, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, KCND2, SLC26A5, LHFPL3, RNF148, FEZF1, LAMB1, LINC00998, DNAJB9, MET, NA NA NA NA NA NA NA NA NA LTS-016 EIF3IP1, NRCAM, ORC5, PNPLA8, TAS2R16, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, PUS7, ING3, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, PTPRZ1, RINT1, TMEM168, LHFPL3-AS1, SLC13A1, SRPK2, SYPL1, LHFPL3-AS2, WNT2, ST7, CBLL1, CPED1, CAPZA2, ARMC10, IMMP2L, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, PMPCB, DOCK4) 0.327138590351527 113 0.100826405121172 0.914614444974231 9254 0.259707075752699 6 4 2 -7.08171112036479 LTS-016 NA NA NA NA LTS-016 chr7 123179332 123198295 18964 * NDUFA5 0.115750518674432 2 0.00777817459305202 0.440364737911745 107 0.187410029904389 10 9 1 -7.22506972681969 LTS-016 chr7 123198296 123254494 56199 * ASB15 NA 0 NA 0.869 1 NA NA NA NA NA LTS-016 chr7 123254495 133261628 10007134 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, ASB15, C7orf77, MGC27345, ZNF800, KLHDC10, FLNC, AHCYL2, TNPO3, HYAL4, POT1, HYALP1, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, GPR37, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, LMOD2, MIR335, NRF1, NA NA NA NA NA NA NA NA NA LTS-016 PAX4, CPA4, ZC3HC1, PODXL, CHCHD3, RBM28, METTL2B, STRIP2, EXOC4, OPN1SW, LRRC4, NA, CCDC136, SMO, SPAM1, MIR592, MIR593, TMEM229A, UBE2H, GCC1, CALU, FAM71F1, TMEM209, WASL, PLXNA4, ATP6V1F, CPA5, CEP41) 0.31146060716929 72 0.0959329284477618 0.972452182901265 5660 0.341704474102084 6 4 2 -6.81106785732352 LTS-016 NA NA NA NA LTS-016 chr7 133261629 133314741 53113 * EXOC4 NA 0 NA 1.285 1 NA NA NA NA NA LTS-016 chr7 133314742 134576465 1261724 * c(LRGUK, AKR1B1, AKR1B15, AKR1B10, EXOC4, BPGM, CALD1, SLC35B4) 0.472591124372993 3 0.00416333199893227 1.2304925054064 550 0.279847883454244 8 4 4 -17.7980855413332 LTS-016 chr7 134576466 134605293 28828 * CALD1 NA 0 NA 0.916 1 NA NA NA NA NA LTS-016 chr7 134605294 141627939 7022646 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, TMEM140, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, NA NA NA NA NA NA NA NA NA LTS-016 AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.332493231838377 93 0.0893278992576661 0.943163384111471 5486 0.267533348464737 6 4 2 -6.75044116010592 LTS-016 NA NA NA NA LTS-016 chr7 141627940 141628704 765 * CLEC5A 0.324 1 NA 0.959149565878531 17 0.915882855179506 6 6 0 -5.76441014266702 LTS-016 chr7 141628705 141765379 136675 * c(CLEC5A, TAS2R38, MGAM) 0.225158185292143 6 0.169749717721906 1.01806122645474 265 0.768404028062746 5 4 1 -6.74051819825357 LTS-016 chr7 141765380 141765555 176 * MGAM NA 0 NA 0.359 1 NA NA NA NA NA LTS-016 chr7 141765556 141794410 28855 * MGAM NA 0 NA 0.350588470799728 95 0.0744456527083137 2 NA NA -5.76757234296128 LTS-016 chr7 141794411 141794586 176 * MGAM NA 0 NA 0.816 1 NA NA NA NA NA LTS-016 chr7 141794587 142120072 325486 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.271160325026496 11 0.130813190883377 0.94275979240854 482 0.292194395961588 7 5 2 -6.8147964049074 LTS-016 chr7 142120073 142120191 119 * character(0) NA 0 NA 1.814 1 NA NA NA NA NA LTS-016 chr7 142120192 142498897 378706 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.280954719294885 57 0.11426377060636 1.39677059455101 369 2.19857189289097 11 8 3 -6.73482758043467 LTS-016 chr7 142498898 142498982 85 * character(0) NA 0 NA 1.047 1 NA NA NA NA NA LTS-016 chr7 142498983 143054411 555429 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, CASP2, OR6W1P, FAM131B) 0.1819544961841 9 0.145836190448203 0.961295989338245 1024 0.37418185057953 6 5 1 -6.73481802708143 LTS-016 chr7 143054412 143085819 31408 * c(ZYX, FAM131B) 0.286 1 NA 0.955527326581197 109 0.201378995081937 6 6 0 -5.76441013564382 LTS-016 chr7 143085820 143305587 219768 * c(EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX) 0.277 1 NA 1.04413151680162 189 0.28592284156264 7 7 0 -5.76939915051291 LTS-016 chr7 143305588 143321183 15596 * TCAF2 NA 0 NA 0.123362723854779 39 0.195748982034675 1 NA NA -5.83703791078722 LTS-016 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.691 1 NA NA NA NA NA LTS-016 chr7 143400289 143883454 483166 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.33880685664706 6 0.0223196475479938 1.04307841979648 283 0.405643917859165 6 4 2 -6.76289487226194 LTS-016 chr7 143883455 143883961 507 * ARHGEF35 NA 0 NA 0.615 1 NA NA NA NA NA LTS-016 chr7 143883962 143981556 97595 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.367 1 NA 0.695028447285506 83 0.453360879737029 4 4 0 -5.76523090225151 LTS-016 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 0.812 1 NA NA NA NA NA LTS-016 chr7 143982346 149416609 5434264 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, C7orf33, EZH2, CNTNAP2, TPK1, ZNF777, ZNF398, ARHGEF34P, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.365297725511352 22 0.0548154716365364 0.948654607682952 1804 0.326268958967892 6 4 2 -6.83667530765459 LTS-016 chr7 149416610 149416670 61 * KRBA1 NA 0 NA 1.266 1 NA NA NA NA NA LTS-016 chr7 149416671 149563791 147121 * c(ZNF467, SSPO, ZNF862, KRBA1) 0.258433572320956 15 0.154729933694009 1.07863162514017 863 0.349675104849306 8 6 2 -6.7496337504401 LTS-016 chr7 149563792 150642683 1078892 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, ATP6V0E2, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, KCNH2, ATP6V0E2-AS1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ZNF862, ACTR3C, LRRC61, LOC728743) 0.342615399976915 45 0.0952521533996619 0.908644257002864 1123 0.343417765251049 6 4 2 -6.74686592007331 LTS-016 chr7 150642684 151164264 521581 * c(WDR86-AS1, MIR3907, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GBX1, ATG9B, WDR86, KCNH2, NOS3, NUB1, CHPF2, RHEB, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.305899556790492 21 0.115300869364418 1.02333815208373 1638 0.291830384705003 7 5 2 -6.75677818449908 LTS-016 chr7 151164265 151164348 84 * RHEB 0.435 1 NA 0.516 1 NA NA NA NA NA LTS-016 chr7 151164349 158456939 7292591 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, DNAJB6, PRKAG2-AS1, LOC100506585, MIR5707, C7orf13, RNF32, RBM33, GALNTL5, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, PRKAG2, NCAPG2, ACTR3B, PTPRN2, KMT2C, RHEB, GALNT11, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, XRCC2, UBE3C) 0.33400242128172 59 0.123990400921798 0.937150372800223 3571 0.29050298306244 6 4 2 -6.75524060326019 LTS-016 chr7 158456940 159025951 569012 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) NA 0 NA 0.909199035770146 558 0.196399851997981 6 NA NA -5.78615255785056 LTS-016 chr8 182757 182934 178 * ZNF596 0.429 1 NA 0.0871675532731012 3 0.039585350825779 0 0 0 -5.77015129730272 LTS-016 chr8 182935 6793581 6610647 * c(LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA4, DEFA6, DEFB1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, AGPAT5, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.427116854636591 53 0.0583841937374702 0.0760270685340208 2220 0.0312954422216336 0 0 0 -17.2680860762376 LTS-016 chr8 6793582 6794207 626 * DEFA4 0.25 1 NA 0.0682537211318277 5 0.0821157719320716 0 0 0 -5.76453085899909 LTS-016 chr8 6794208 7214028 419821 * c(FAM66B, DEFA1, DEFA4, DEFA5, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) NA 0 NA 0.0824316447073671 25 0.0525824749005471 0 NA NA -8.72383068415566 LTS-016 chr8 7214029 7272382 58354 * ZNF705G NA 0 NA 0.934 1 NA NA NA NA NA LTS-016 chr8 7272383 7752350 479968 * c(DEFB4B, DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.239226917408885 8 0.142781989160298 0.9127714940568 117 0.996164510558116 5 4 1 -6.74378056333717 LTS-016 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.035 1 NA NA NA NA NA LTS-016 chr8 8175295 8889900 714606 * c(CLDN23, SGK223, ERI1, MFHAS1) 0.319425928642048 3 0.0758573222130424 0.0729882100971866 363 0.0837240391491178 0 0 0 -8.25637957399531 LTS-016 chr8 8889901 8890098 198 * ERI1 0.444 1 NA 0.0714739375157226 7 0.0167531091641721 0 0 0 -5.76802639237383 LTS-016 chr8 8890099 10464483 1574385 * c(MIR4660, LOC157273, LINC00599, PRSS55, MIR124-1, MSRA, MIR597, PPP1R3B, TNKS, ERI1, RP1L1) 0.391455140908297 10 0.0710978199384482 0.0701458448996389 624 0.0274910752653507 0 0 0 -10.357587345124 LTS-016 chr8 10464484 11175735 711252 * c(MIR1322, C8orf74, XKR6, PINX1, MTMR9, MIR598, SOX7, RP1L1) 0.416165578018329 15 0.0710595323855789 0.0817326796229981 715 0.0328080996868993 0 0 0 -12.8952018500497 LTS-016 chr8 11175736 11182036 6301 * MTMR9 0.4 1 NA 0.0533445619861032 97 0.023618254596219 0 0 0 -6.02358161122859 LTS-016 chr8 11182037 11302430 120394 * c(TDH, MTMR9, FAM167A, SLC35G5, FAM167A-AS1) 0.3396 2 0.105358910396796 0.0722304259505586 206 0.037600467044323 0 0 0 -7.52329971943424 LTS-016 chr8 11302431 11615844 313414 * c(GATA4, BLK, FAM167A, LINC00208) NA 0 NA 0.0817090527311289 172 0.0688583998228698 0 NA NA -7.31787597218311 LTS-016 chr8 11615845 11615943 99 * GATA4 NA 0 NA 0.891 1 NA NA NA NA NA LTS-016 chr8 11615944 11616338 395 * GATA4 0.062 1 NA 0.784770962898335 7 0.298522313116744 5 5 0 -5.76441222151834 LTS-016 chr8 11616339 16122654 4506316 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, LONRF1) 0.0468795700857569 46 0.0211614452078544 0.692704677981015 1182 0.290866888847359 4 4 0 -6.82382791985165 LTS-016 chr8 16122655 16122753 99 * character(0) NA 0 NA 0.799 1 NA NA NA NA NA LTS-016 chr8 16122754 16859579 736826 * FGF20 0 1 NA 1.15356091337247 39 0.32882115743402 7 7 0 -5.77232606242153 LTS-016 chr8 16859580 39313082 22453503 * c(NAT2, RBPMS-AS1, LOC100128993, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, LZTS1-AS1, NRG1-IT3, SORBS3, NPM2, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CLU, GOT1L1, VPS37A, NKX2-6, UNC5D, LETM2, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, ADAM3A, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, LGI3, DMTN, EPHX2, EXTL3, PTK2B, FGFR1, NA NA NA NA NA NA NA NA NA LTS-016 FGL1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, PSD3, LEPROTL1, SLC39A14, LOC254896, ADAM5, ADGRA2, FGF20, GFRA2, LSM1, ADAMDEC1, GNRH1, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, CNOT7, PURG, NRG1, LOC389641, NUGGC, C8orf86, LOXL2, LPL, MIR320A, ASAH1, NEFM, NEFL, NKX3-1, PCM1, ZDHHC2, SLC25A37, SCARA3, PDGFRL, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 INTS10, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, TEX15, MTUS1, CCAR2, PLEKHA2, LINC00589, MBOAT4, SH2D4A, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, RNF122, NUDT18, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, TNFRSF10D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, ASH2L, MTMR7, CHMP7, BAG4, ENTPD4, PHYHIP) 0.0509539505463255 274 0.0365149843449103 0.621441793917969 15324 0.270172250381517 4 4 0 -7.30214232666552 LTS-016 NA NA NA NA LTS-016 chr8 39313083 39323299 10217 * ADAM3A NA 0 NA 1.169 1 NA NA NA NA NA LTS-016 chr8 39323300 39349408 26109 * ADAM3A 0 1 NA 1.25671276670551 42 0.607233423251379 8 8 0 -5.76441066939409 LTS-016 chr8 39349409 39349414 6 * ADAM3A NA 0 NA 0.643 1 NA NA NA NA NA LTS-016 chr8 39349415 41391704 2042290 * c(LOC100130964, ADAM3A, IDO2, ADAM2, IDO1, GOLGA7, C8orf4, SFRP1, ZMAT4, GINS4, ADAM18) 0.0394022871504942 5 0.0295584167370311 0.65931358866937 625 0.20665497330029 4 4 0 -6.80552012928482 LTS-016 chr8 41391705 41391761 57 * GINS4 0.107 1 NA 0.414599974457453 3 0.421900857232281 2 2 0 -5.7644136196541 LTS-016 chr8 41391762 41513371 121610 * c(GPAT4, NKX6-3, ANK1, GINS4) 0.0622888883334773 4 0.0226936114358204 0.644617510292589 384 0.225742759850435 3 3 0 -6.8140934601008 LTS-016 chr8 41513372 43056513 1543142 * c(MIR4469, AP3M2, CHRNB3, SMIM19, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, PLAT, POLB, THAP1, MIR486-1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.433155344654754 5 0.0492371810728437 1.24267387601884 1838 0.314120119534389 8 4 4 -6.81851664925257 LTS-016 chr8 43056514 43212050 155537 * c(HGSNAT, POTEA) NA 0 NA 1.31469345878242 75 0.362845998653339 8 NA NA -5.76608745956711 LTS-016 chr8 47752736 48102818 350083 * c(LOC100287846, LINC00293) 0.446 1 NA 1.25093786288831 45 0.29410459041132 8 8 0 -5.76441285280803 LTS-016 chr8 48102819 59061057 10958239 * c(SBF1P1, LOC100287846, LINC00968, LINC01606, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, PXDNL, SDR16C5, SPIDR, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, PRKDC, RP1, RPS20, SOX17, SNAI2, TCEA1, UBE2V2, CHCHD7, EFCAB1, RGS20, FAM110B, TGS1, ST18, RB1CC1) 0.409589552749495 45 0.122781106038348 1.19417152132182 3830 0.392969872685548 8 4 4 -6.82854236434717 LTS-016 chr8 59061058 76478670 17417613 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, MIR2052, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, MIR4470, MIR5681A, MIR5681B, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, C8orf34, ADHFE1, UBXN2B, CRH, RDH10, MCMDC2, CLVS1, SBSPON, CYP7A1, EYA1, RRS1, SULF1, TRAM1, LY96, SGK3, YTHDF3, C8orf46, PTTG3P, STAU2, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, HNF4G, XKR9, LOC392232, NA NA NA NA NA NA NA NA NA LTS-016 LOC401463, MIR124-2, MIR2052HG, ASPH, MYBL1, PI15, LACTB2, PDE7A, GDAP1, TMEM70, ARMC1, UBE2W, LINC00251, CHD7, C8orf44, JPH1, CPA6, RAB2A, RPL7, SDCBP, PRDM14, SNHG6, SNORD87, UG0898H09, TCEB1, TERF1, TTPA, CA8, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NSMAF, TRIM55, DNAJC5B, GGH, TRPA1, FAM110B, MSC, KCNB2, CYP7B1, MTFR1, TOX) 0.436082919549642 135 0.0849741924207383 1.13125979607035 7190 0.321748861656483 7 4 3 -6.86550781634801 LTS-016 NA NA NA NA LTS-016 chr8 76478671 76479070 400 * HNF4G NA 0 NA 1.81946139843942 6 3.81173177178038 12 NA NA -5.76441013806007 LTS-016 chr8 76479071 77745635 1266565 * c(ZFHX4-AS1, ZFHX4) 0.044 1 NA 0.598571580147452 85 0.173018357698946 4 4 0 -5.98846731078266 LTS-016 chr8 77745636 88395004 10649369 * c(REXO1L2P, MIR5708, LOC101241902, WWP1, STMN2, RALYL, SLC7A13, CNBD1, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf59, ZC2HC1A, RMDN1, PMP2, CNGB3, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, CA1, CA2, CA3, ZFAND1, ZFHX4, LRRCC1, PSKH2, CPNE3, CHMP4C) 0.0562094299984034 55 0.0314476423401534 0.575042132556279 3215 0.222861708025307 3 3 0 -8.2022892219287 LTS-016 chr8 88395005 89340315 945311 * c(DCAF4L2, MMP16) NA 0 NA 0.60323173688786 363 0.145452535353598 4 NA NA -5.96503380585862 LTS-016 chr8 90770017 90770134 118 * RIPK2 0.468 1 NA 0.69444859326138 3 0.424653976785806 4 4 0 -5.76441122169826 LTS-016 chr8 90770135 99234772 8464638 * c(C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, SLC26A7, FAM92A1, NDUFAF6, C8orf37, DECR1, TMEM64, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, NBN, MTERF3, OTUD6B, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, SDC2, NECAB1, LINC00535, OSGIN2, NA NA NA NA NA NA NA NA NA LTS-016 UQCRB, CALB1, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, RIPK2, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.419063396410109 76 0.0891933991735955 1.06376990239523 4656 0.269936066855178 7 4 3 -6.83910757188843 LTS-016 NA NA NA NA LTS-016 chr8 99234773 99248574 13802 * NIPAL2 NA 0 NA 1.01744906376753 9 0.215804953089075 6 NA NA -5.76511209890298 LTS-016 chr8 99248575 99264654 16080 * NIPAL2 NA 0 NA 1.605 1 NA NA NA NA NA LTS-016 chr8 99264655 99441904 177250 * c(KCNS2, NIPAL2) 0.334 1 NA 1.6297026557268 55 0.268479722914342 11 11 0 -5.76685529332353 LTS-016 chr8 99441905 104513103 5071199 * c(MIR875, MIR3151, BAALC-AS1, MIR4471, MIR5680, CTHRC1, OSR2, COX6C, BAALC-AS2, ANKRD46, VPS13B, SNX31, DCAF13, RNF19A, RGS22, PABPC1, FBXO43, KCNS2, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, STK3, MIR599, KLF10, YWHAZ, BAALC, GRHL2, SLC25A32, FZD6, NACAP1, NCALD, RIMS2) 0.292463177854573 57 0.065321390717077 1.50717384864324 2916 1.81540170051182 11 8 3 -6.76302230118263 LTS-016 chr8 104513104 104513160 57 * RIMS2 NA 0 NA 2.154 1 NA NA NA NA NA LTS-016 chr8 104513161 109796130 5282970 * c(ABRA, TMEM74, DPYS, ZFPM2, ANGPT1, LRP12, RSPO2, EIF3E, OXR1, DCSTAMP, EMC2, RIMS2) 0.311679855981627 14 0.0427569157698944 1.62644117728238 1280 0.384581181141376 10 7 3 -6.78815505497869 LTS-016 chr8 109796131 117956650 8160520 * c(MIR2053, MIR3610, LINC00536, CSMD3, TMEM74, KCNV1, AARD, SYBU, ENY2, RAD21, RAD21-AS1, TRHR, TRPS1, UTP23, NUDCD1, EIF3H, EBAG9, PKHD1L1) 0.344676214286101 17 0.211002526469402 2.22476303450405 2067 1.72432074527236 15 10 5 -6.73538430983292 LTS-016 chr8 117956651 118810508 853858 * c(SLC30A8, MED30) 0.471 1 NA 2.3595282755526 172 0.52867284944675 15 15 0 -5.76600255832914 LTS-016 chr8 118810509 133048593 14238085 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, TRIB1, COLEC10, RNF139, ZHX1, ADCY8, MAL2, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, EXT1, ZHX2, EFR3A, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, MYC, NDUFB9, NOV, TNFRSF11B, ASAP1, FAM49B, ENPP2, POU5F1B, TRMT12, WDYHV1, SAMD12-AS1, GSDMC, NA NA NA NA NA NA NA NA NA LTS-016 PVT1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, CASC8, LINC00977, OC90, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.449779593542587 82 0.0764155395737469 2.16827844766524 4851 0.576073785891912 14 7 7 -6.86192991797823 LTS-016 NA NA NA NA LTS-016 chr8 133048594 133053366 4773 * OC90 0 1 NA 2.7883645137154 19 3.37840618673556 18 18 0 -5.76441022427073 LTS-016 chr8 133053367 133175817 122451 * c(HHLA1, KCNQ3, OC90) 0.305612788832614 9 0.230689786895254 2.3361255399652 233 1.20898297770802 17 12 5 -6.73404348520993 LTS-016 chr8 133175818 133700036 524219 * c(LRRC6, KCNQ3, HPYR1) 0.482 1 NA 2.12083159483779 153 0.633347758444707 14 14 0 -5.76449189078638 LTS-016 chr8 133700037 136569890 2869854 * c(NDRG1, KHDRBS3, TMEM71, LINC01591, MIR30B, MIR30D, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1) 0.416080650485741 36 0.146676977451425 2.16574527980024 1323 0.558081626525959 14 7 7 -6.7337377788017 LTS-016 chr8 136569891 136594056 24166 * KHDRBS3 NA 0 NA 3.57 1 NA NA NA NA NA LTS-016 chr8 136594057 141034189 4440133 * c(KHDRBS3, COL22A1, FAM135B, KCNK9, TRAPPC9) 0.387828993773342 24 0.170897624876432 2.47445375279409 742 1.2221421500333 17 10 7 -6.73838554609911 LTS-016 chr8 141034190 141407906 373717 * TRAPPC9 NA 0 NA 2.41875684702626 67 0.826784010270018 16 NA NA -5.76443377411373 LTS-016 chr8 141407907 141415668 7762 * TRAPPC9 NA 0 NA 1.952 1 NA NA NA NA NA LTS-016 chr8 141415669 141521345 105677 * TRAPPC9 0.449 1 NA 2.16366775365137 43 0.603004592193111 14 14 0 -5.76442683184466 LTS-016 chr8 141521346 142202467 681122 * c(DENND3, AGO2, CHRAC1, PTK2) 0.467983200578564 26 0.0294668523024667 2.11436232897881 654 0.523079100937746 14 7 7 -8.25175824824692 LTS-016 chr8 142202468 142266691 64224 * c(DENND3, SLC45A4) 0.472028539875146 17 0.0183397270490946 2.35501829171346 263 0.750003569046936 19 10 9 -9.9886688640324 LTS-016 chr8 142266692 142444119 177428 * c(PTP4A3, GPR20, MROH5, LINC01300) 0 1 NA 2.62913451600852 87 0.551966683045933 17 17 0 -5.76449801916844 LTS-016 chr8 142444120 143353158 909039 * c(MIR4472-1, TSNARE1, MROH5, LINC00051) 0.138559230904773 10 0.218820804414124 2.58281978733451 228 2.56643279651318 16 14 2 -6.73343061342612 LTS-016 chr8 143353159 143412377 59219 * TSNARE1 0.476 1 NA 2.96044198683843 33 0.803261866948718 20 20 0 -5.76444236332014 LTS-016 chr8 143412378 145931412 2519035 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, WDR97, TMEM249, SPATC1, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, NA NA NA NA NA NA NA NA NA LTS-016 THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, ADGRB1, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.434205729304834 128 0.126602635684273 2.42245179575257 6069 0.865491856638496 16 8 8 -6.74763069062303 LTS-016 NA NA NA NA LTS-016 chr8 145931413 145932215 803 * character(0) NA 0 NA 2.133 1 NA NA NA NA NA LTS-016 chr8 145932216 146280802 348587 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF517, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, ZNF34, ZNF251) 0.440230339846222 30 0.121514962893039 2.19142098536001 834 0.625109162200045 14 7 7 -6.76008631113405 LTS-016 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 1.27843261252799 3 0.281746931364537 8 NA NA -5.76441046446701 LTS-016 chr9 14732 213291 198560 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.356 1 NA 0.74011639077605 13 0.342449715567567 5 5 0 -5.77202489440249 LTS-016 chr9 213292 21440975 21227684 * c(LINC00583, C9orf92, MIR3152, MIR4473, MIR4665, MIR4474, RCL1, DMRT2, RRAGA, PSIP1, INSL6, UHRF2, PLIN2, C9orf66, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, CCDC171, KDM4C, MLANA, KANK1, SLC24A2, RANBP6, GLDC, LURAP1L, CD274, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, INSL4, JAK2, LOC389705, VLDLR-AS1, NA NA NA NA NA NA NA NA NA LTS-016 LINC01235, HACD4, PLPP6, MIR101-2, MLLT3, NFIB, AK3, BNC2, HAUS6, CNTLN, FOCAD, SPATA6L, CDC37L1, DENND4C, PLGRKT, KLHL9, MIR491, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, SH3GL2, SLC1A1, SMARCA2, SNAPC3, SCARNA8, TYRP1, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PUM3) 0.41223358542683 155 0.101490762868514 1.04307453240753 8252 0.28644045140783 7 4 3 -7.1959470634282 LTS-016 NA NA NA NA LTS-016 chr9 21440976 21441037 62 * IFNA1 NA 0 NA 1.177 1 NA NA NA NA NA LTS-016 chr9 21441038 34725213 13284176 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, ELAVL2, C9orf72, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, IFNE, IFNA1, KIF24, IL11RA, AQP3, AQP7, ENHO, LINC01242, TMEM215, MIR31, CNTFR-AS1, LINC01239, SUGT1P1, NA NA NA NA NA NA NA NA NA LTS-016 ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, UBAP1, CHMP5, EQTN, APTX, UBE2R2, SMU1, MIR31HG, UBAP2, PRSS3, IFNK, BAG1, KIAA1161, CCL19, CCL21, DMRTA1, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, C9orf24, PLAA) 0.408868699119469 90 0.0872166394517321 1.08795214739913 4876 0.292916940418006 7 4 3 -6.75306132386807 LTS-016 NA NA NA NA LTS-016 chr9 34725214 34726315 1102 * FAM205A NA 0 NA 0.444212966058827 48 0.391905356007514 3 NA NA -5.76449290453877 LTS-016 chr9 34726316 38624500 3898185 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, FAM205A, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, NA NA NA NA NA NA NA NA NA LTS-016 FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.411143420937238 95 0.0990163977958944 1.09351408152811 4982 0.444523695004118 7 4 3 -6.73547244142083 LTS-016 NA NA NA NA LTS-016 chr9 38624501 44175697 5551197 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) NA 0 NA 1.10227372897565 131 0.393024999989261 7 NA NA -5.76445543627598 LTS-016 chr9 65602571 66457127 854557 * LOC286297 0.441 1 NA 1.36992863856284 3 0.414658092087123 9 9 0 -5.76587663396841 LTS-016 chr9 66457128 68372384 1915257 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.314733142177043 14 0.115612653781001 1.76183933561883 36 1.46502476575849 13 9 4 -6.74132392551292 LTS-016 chr9 68372385 68409531 37147 * character(0) NA 0 NA 0.996 1 NA NA NA NA NA LTS-016 chr9 68409532 71081188 2671657 * c(FRG1HP, LOC100133920, FOXD4L3, LOC440896, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.327884955760994 10 0.0589990583729003 0.998591996691765 54 0.502743453198996 6 4 2 -6.78192543278794 LTS-016 chr9 71081189 71145379 64191 * PGM5 0.495 1 NA 1.03446317630576 47 0.195730688224084 7 7 0 -5.76864699700389 LTS-016 chr9 71145380 71688311 542932 * c(FAM122A, TMEM252, FXN, PGM5, PRKACG, PIP5K1B) 0.447418655120651 15 0.036751028492249 1.10023408653074 305 0.308519743447052 8 4 4 -7.23631267303146 LTS-016 chr9 71688312 71688476 165 * FXN 0.298 1 NA 1.28306666063368 3 0.401840764482649 8 8 0 -5.76441049452771 LTS-016 chr9 71688477 72324705 636229 * c(BANCR, FXN, APBA1, PTAR1, FAM189A2, TJP2) 0.340906716015803 9 0.185943539817871 1.08624919873109 357 0.285329600123943 7 5 2 -6.76585524208739 LTS-016 chr9 72324706 72325528 823 * PTAR1 0.436 1 NA 0.991989469874155 17 0.263380958711454 6 6 0 -5.76442013023687 LTS-016 chr9 72325529 78937974 6612446 * c(MAMDC2-AS1, SMC5-AS1, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, ALDH1A1, SMC5, TMEM2, MAMDC2, OSTF1, ANXA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PCSK5, NMRK1, C9orf40, RORB, KLF9, ZFAND5, TRPM3, GDA) 0.403169032173558 67 0.100405782311899 1.04730940991355 2764 0.442290507470809 7 4 3 -6.78923738896877 LTS-016 chr9 78937975 78938043 69 * PCSK5 0.458 1 NA 1.64438946171797 3 1.23467890562688 11 11 0 -5.76441016162515 LTS-016 chr9 78938044 80932515 1994472 * c(VPS13A-AS1, PRUNE2, VPS13A, GCNT1, GNAQ, PSAT1, FOXB2, PCA3, PCSK5, RFK, RPSAP9, CEP78, GNA14) 0.220279473422626 9 0.211326629756982 1.04733223319955 1609 0.288237195752683 7 6 1 -6.8144571257828 LTS-016 chr9 80932516 82006605 1074090 * PSAT1 0.49 1 NA 1.04336104364597 41 0.374077212585329 7 7 0 -5.77901238256853 LTS-016 chr9 82006606 85913590 3906985 * c(RASEF, FRMD3, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, TLE1, TLE4) 0.415798468543136 9 0.046446504473187 1.08460502329699 779 0.266969974696547 7 4 3 -6.76780396183198 LTS-016 chr9 85913591 85924428 10838 * FRMD3 0 1 NA 1.12941128848077 14 0.248666553732212 7 7 0 -5.7644651430099 LTS-016 chr9 85924429 86327929 403501 * c(FRMD3, UBQLN1, IDNK) 0 1 NA 1.08473818946997 235 0.379665895897602 7 7 0 -5.76492362202943 LTS-016 chr9 86327930 86354253 26324 * character(0) NA 0 NA 0.312 1 NA NA NA NA NA LTS-016 chr9 86354254 96713690 10359437 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, ANKRD19P, CTSL, CTSLP8, NXNL2, FAM120AOS, LINC00475, DAPK1, ECM2, S1PR3, SUSD3, FAM120A, AGTPBP1, BICD2, CDK20, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, HNRNPK, IARS, LINC01501, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, NA NA NA NA NA NA NA NA NA LTS-016 MIR7-1, LOC440173, SPATA31C1, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NOL8, KIF27, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, C9orf64, CARD19, FGD3) 0.0464741931322529 81 0.0306704254942771 0.632902786895941 5731 0.205649474401195 4 4 0 -6.96574640160153 LTS-016 NA NA NA NA LTS-016 chr9 96713691 96827123 113433 * c(PTPDC1, BARX1) 0.058 1 NA 0.652972804498744 41 0.161508687374893 4 4 0 -5.76460939883309 LTS-016 chr9 96827124 97078318 251195 * c(PTPDC1, MIRLET7DHG, ZNF169, MIRLET7A1, MIRLET7D, MIRLET7F1) 0.045 1 NA 0.624646409187362 212 0.19381767319016 4 4 0 -5.77569679541562 LTS-016 chr9 97078319 97078486 168 * character(0) NA 0 NA 1.539 1 NA NA NA NA NA LTS-016 chr9 97078487 97082605 4119 * NUTM2F 0.417121633110051 3 0.0310859024854247 1.81718937798669 41 7.96628288008967 19 10 9 -6.736811026059 LTS-016 chr9 97082606 97426576 343971 * c(LOC100132077, FBP1, NUTM2F, MFSD14B, FBP2) 0.0708186714204542 5 0.0169026625121606 0.677465174702281 247 0.305142028379074 3 3 0 -6.99862054698266 LTS-016 chr9 97426577 97572359 145783 * c(MIR2278, C9orf3) NA 0 NA 0.659351275870004 65 0.104659135365168 4 NA NA -5.76441783055844 LTS-016 chr9 97572360 97686280 113921 * C9orf3 NA 0 NA 0.912 1 NA NA NA NA NA LTS-016 chr9 97686281 97768286 82006 * C9orf3 0.059 1 NA 0.876532861196446 53 0.246578140536465 5 5 0 -5.76991762164996 LTS-016 chr9 97768287 99637660 1869374 * c(LINC00476, LOC100132781, LINC00092, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441455, PTCH1, C9orf3, CDC14B) 0.0424081256876265 19 0.0164158317536378 0.879739538216069 1401 0.271371612637369 5 5 0 -6.85102315413201 LTS-016 chr9 99637661 99700859 63199 * c(ZNF782, LOC441454, NUTM2G) NA 0 NA 0.766430872284943 39 0.444373329386953 5 NA NA -5.76492326035289 LTS-016 chr9 99700860 99702971 2112 * NUTM2G 0.449 1 NA 0.355295945501996 29 0.341587218124752 2 2 0 -5.76441384466527 LTS-016 chr9 99702972 99704019 1048 * NUTM2G NA 0 NA 0.303950828383692 17 0.245905409839302 2 NA NA -5.76472671903297 LTS-016 chr9 99704020 99704089 70 * NUTM2G NA 0 NA 1.388 1 NA NA NA NA NA LTS-016 chr9 99704090 100361864 657775 * c(CCDC180, LOC100499484, CTSV, TDRD7, LOC286359, GAS2L1P2, NUTM2G, LOC100499484-C9ORF174, TMOD1, MFSD14C) 0.166682176249038 9 0.143566573794568 0.921595819696533 544 0.275533483679058 6 5 1 -6.75521107896767 LTS-016 chr9 100361865 100364302 2438 * c(TSTD2, TMOD1) 0.02 1 NA 0.869338848247141 47 0.556263865837637 5 5 0 -5.76443621664908 LTS-016 chr9 100364303 116835398 16471096 * c(FAM225B, MIR548Q, MIR3134, MSANTD3-TMEFF1, MIR4668, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, AKAP2, PALM2, WDR31, ZNF618, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF883, ABCA1, LPAR1, ANKS6, ALAD, FKTN, ALDOB, PTGR1, FOXE1, ERP44, FKBP15, KIAA0368, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, NA NA NA NA NA NA NA NA NA LTS-016 OR2K2, INVS, GNG10, FAM225A, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, SNX30, MIR32, STX17-AS1, PALM2-AKAP2, MUSK, NCBP1, TRMO, POLE3, NANS, MRPL50, EPB41L4B, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, STX17, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, SUSD1, LRRC37A5P, TAL2, TGFBR1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SVEP1, NR4A3, HDHD3, FSD1L, HSDL2, TMEM246, IKBKAP, ALG2, TMEFF1, CTNNAL1, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, PTBP3) 0.0361305511150604 184 0.0356034960816813 0.907965495052405 10900 0.322083585710873 6 6 0 -6.97267526816168 LTS-016 NA NA NA NA LTS-016 chr9 116835399 117074810 239412 * c(KIF12, AMBP, MIR455, COL27A1) 0.0344053215451548 13 0.0136635393545123 1.00635109515659 500 0.327166787216115 6 6 0 -6.73664189572427 LTS-016 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.351 1 NA NA NA NA NA LTS-016 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.288449237043712 39 0.088821440615937 2 NA NA -5.78234324220736 LTS-016 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.005 1 NA NA NA NA NA LTS-016 chr9 117092173 135821182 18729010 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100272217, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100505478, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, POMT1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, AK8, OR1Q1, TTLL11, TTC16, BRINP1, OLFML2A, DNM1, TOR1A, MEGF9, NA NA NA NA NA NA NA NA NA LTS-016 ENDOG, ENG, AK1, TMEM268, NAIF1, STOM, DOLK, TRIM32, FNBP1, SETX, ZBTB43, ASTN2, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, WHRN, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, GSN, PKN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SLC2A8, ST6GALNAC6, HSPA5, TNC, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, BARHL1, SH3GLB2, PSMB7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, LINC00474, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TLR4, TRAF1, TSC1, C5, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, AKNA, MIR600HG, URM1, ARPC5L, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C4, LHX2, TNFSF8, MED27, PTGES, ATP6V1G1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RALGPS1, TNFSF15) 0.036116228100692 259 0.0323272791395225 0.933583452568047 18118 0.419001901304506 6 6 0 -6.7689944273446 LTS-016 NA NA NA NA LTS-016 chr9 135821183 135861950 40768 * GFI1B NA 0 NA 1.069 1 NA NA NA NA NA LTS-016 chr9 135861951 139973629 4111679 * c(LOC100128593, LINC01502, CCDC183-AS1, RNU6ATAC, MIR4292, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, UBAC1, OLFM1, AGPAT2, CEL, CELP, SDCCAG3, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, DBH, STKLD1, QSOX2, SARDH, ABCA2, FCN1, FCN2, PMPCA, NA NA NA NA NA NA NA NA NA LTS-016 FUT7, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, LCN12, C9orf142, PHPT1, OBP2B, OBP2A, GLT6D1, LCN15, C9orf172, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, REXO4, PTGDS, KCNT1, RALGDS, RPL7A, RXRA, CARD9, FAM163B, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TRAF2, DNLZ, C8G, VAV2, BRD3, LHX3, GFI1B, CCDC183, SNHG7, TMEM141, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, GTF3C5, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.0350401128296459 186 0.0219598700071161 0.993586632259581 7241 0.953440198039706 6 6 0 -6.73773360826215 LTS-016 NA NA NA NA LTS-016 chr9 139973630 139973820 191 * UAP1L1 0.03 1 NA 0.972082090035165 3 0.0955353337776134 6 6 0 -5.76441383974737 LTS-016 chr9 139973821 140002989 29169 * c(MAN1B1-AS1, MAN1B1, UAP1L1) 0.13090127476531 9 0.132618814653125 0.970472711398145 195 0.409443159190605 8 7 1 -6.74641571168958 LTS-016 chr9 140002990 140003427 438 * MAN1B1 0.017 1 NA 0.956146483217646 9 0.83894978991594 6 6 0 -5.76441013483088 LTS-016 chr9 140003428 140356374 352947 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, MAN1B1, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, RNF224, RNF208, SSNA1, TMEM203) 0.033565025183081 22 0.0172478745788917 0.968682130664031 1394 0.271024583765624 6 6 0 -6.73488228267123 LTS-016 chr9 140356375 140777306 420932 * c(ZMYND19, PNPLA7, EHMT1-IT1, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.415 1 NA 0.956872188496717 537 0.27931020099653 6 6 0 -5.76441696632002 LTS-016 chr9 140777307 141070283 292977 * c(TUBBP5, CACNA1B) 0.0856681497727396 11 0.111946659376037 0.999690672326875 323 0.653522725138143 5 5 0 -6.84734977912372 LTS-016 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.691996912078501 5 0.384858805277988 4 NA NA -5.76442466086021 LTS-016 chr10 94832 370564 275733 * c(ZMYND11, DIP2C, TUBB8) 0.381 1 NA 1.42291164623264 231 0.333580377830524 9 9 0 -5.76477975087327 LTS-016 chr10 370565 1421640 1051076 * c(MIR5699, ADARB2, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, LINC00200, PRR26, IDI2-AS1, IDI2) 0.385798914254091 26 0.0921545190677884 1.47580778017968 922 0.443793679084697 10 6 4 -6.74251958246271 LTS-016 chr10 1421641 1779684 358044 * c(ADARB2, ADARB2-AS1) NA 0 NA 1.56667159269133 30 0.328046457321093 10 NA NA -5.76466581103188 LTS-016 chr10 1779685 3124516 1344832 * c(LINC00700, LINC00701, PFKP) 0.069 1 NA 0.904326781076321 13 0.365879183506082 6 6 0 -5.78260578582974 LTS-016 chr10 3124517 16556151 13431635 * c(PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, OPTN, NET1, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, LINC00705, AKR1C8P, IL2RA, IL15RA, ITIH2, AKR1C6P, C1QL3, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, NA NA NA NA NA NA NA NA NA LTS-016 PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, PTER, NMT2, USP6NL) 0.0382211870043535 183 0.0339153532485289 0.864623414486796 6676 0.345889381244527 5 5 0 -7.03955396192371 LTS-016 NA NA NA NA LTS-016 chr10 16556152 17875806 1319655 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, RSU1, TMEM236, VIM, STAM, CUBN, HACD1) 0.0409938216349123 12 0.0148068370775944 0.791021729310763 975 0.244423493442817 5 5 0 -6.73872672652859 LTS-016 chr10 17875807 18086166 210360 * c(MRC1, NA, TMEM236) 0.235 1 NA 0.333813324361073 59 0.377505714635045 2 2 0 -5.77019474755582 LTS-016 chr10 18086167 23326509 5240343 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, SLC39A12, NSUN6, ARL5B, COMMD3, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, NA, DNAJC1, BMI1, TMEM236, CACNB2, MLLT10, PLXDC2, SPAG6) 0.0286296977039376 32 0.0211209076967701 0.885641779707929 2081 0.423300544436165 6 6 0 -6.87647419242721 LTS-016 chr10 23326510 23384435 57926 * c(ARMC3, MSRB2) NA 0 NA 0.348 1 NA NA NA NA NA LTS-016 chr10 23384436 25314538 1930103 * c(ENKUR, OTUD1, MSRB2, PTF1A, C10orf67, KIAA1217, PRTFDC1, ARHGAP21, MIR603, THNSL1) 0.0447752132390854 14 0.0367022471390369 0.628973466942642 940 0.245478063441295 4 4 0 -6.78469222383258 LTS-016 chr10 25314539 25314637 99 * c(ENKUR, THNSL1) 0.076 1 NA 0.941858693123726 3 0.575731129376668 6 6 0 -5.76441017124138 LTS-016 chr10 25314638 29600249 4285612 * c(ABI1, GPR158-AS1, LINC00837, MIR5586, YME1L1, MPP7, ENKUR, WAC-AS1, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, PTCHD3, LINC00202-1, LRRC37A6P, WAC, MYO3A, APBB1IP, ARMC4, GPR158, LINC00264, LINC00202-2, THNSL1, LYZL1, MASTL, ACBD5) 0.0591993926893394 47 0.0335672520029645 0.603906792288383 2173 0.233112756574018 4 4 0 -7.11760381616617 LTS-016 chr10 29600250 29746219 145970 * PTCHD3P1 NA 0 NA 0.295 1 NA NA NA NA NA LTS-016 chr10 29746220 30301851 555632 * c(MIR938, PTCHD3P1, KIAA1462, SVIL, MIR604) 0.11222096057876 7 0.0371053840272476 0.345377768704032 247 0.101417613068663 2 2 0 -7.00558858494968 LTS-016 chr10 30301852 30629226 327375 * c(MTPAP, KIAA1462) 0.0645940351473173 6 0.0141903723230459 0.591928897099961 244 0.949475401373231 3 3 0 -6.73848585326728 LTS-016 chr10 30629227 30739538 110312 * c(MAP3K8, MTPAP) 0.13 1 NA 0.556722655371992 55 0.109383281889429 3 3 0 -5.80602826607525 LTS-016 chr10 30739539 31166026 426488 * c(LYZL2, MAP3K8, ZNF438) 0.244561127701534 5 0.16120731993306 0.56664725807941 196 0.223495254609738 4 3 1 -6.86798003283201 LTS-016 chr10 31166027 31608119 442093 * c(ZNF438, ZEB1-AS1, ZEB1) NA 0 NA 1.142 1 NA NA NA NA NA LTS-016 chr10 31608120 33000652 1392533 * c(NA, KIF5B, ZEB1, CCDC7, EPC1, ARHGAP12) 0.197162844127502 4 0.24125436092777 1.06875916712289 654 0.343720956519877 7 6 1 -6.75155096117094 LTS-016 chr10 33000653 33466519 465867 * c(ITGB1, CCDC7, NRP1) 0.5 1 NA 1.04895115791739 207 0.705084525018705 7 7 0 -5.76587412883358 LTS-016 chr10 33466520 38672144 5205625 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, SEPT7P9, PARD3, ZNF248, ZNF33A, ZNF37A, FZD8, CUL2, NRP1, ANKRD30A) 0.431981622082313 46 0.0726147534283422 1.09854379501404 1560 0.285362377227596 7 4 3 -6.80762247345922 LTS-016 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.987617819513622 5 0.393846670672738 6 NA NA -5.76469893931765 LTS-016 chr10 42379906 43694541 1314636 * c(ZNF37BP, MIR5100, RASGEF1A, LOC441666, CSGALNACT2, RET, ZNF33B, LINC00839, BMS1) 0.288544128967768 16 0.189863064689616 1.15617599581083 615 0.554100361083922 7 5 2 -6.74005435893184 LTS-016 chr10 43694542 44051819 357278 * c(RASGEF1A, HNRNPF, FXYD4, ZNF487, ZNF239) 0.495 1 NA 1.09094884242314 169 0.338666354737134 7 7 0 -5.76466933933117 LTS-016 chr10 44051820 46659788 2607969 * c(C10orf142, RSU1P2, MIR3156-1, LINC00840, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, ALOX5, FAM21C, PTPN20, LINC00841, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, CXCL12, TMEM72, NA, ZNF22, ZNF32, OR13A1, ZNF239, RASSF4, ZFAND4) 0.458636769433231 21 0.0274344239787829 1.13306847025399 1012 0.252350873318797 8 4 4 -8.22086849642494 LTS-016 chr10 46659789 46927789 268001 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 1.72 1 NA NA NA NA NA LTS-016 chr10 46927790 47087859 160070 * c(PTPN20, GLUD1P7, FAM35BP, NPY4R, NA, NA, SYT15, GPRIN2) 0.415130952084685 31 0.041307058940084 1.76349700826177 196 1.37749727200452 12 6 6 -6.73327569117643 LTS-016 chr10 47087860 47087993 134 * c(PTPN20, GLUD1P7, NPY4R, NA, NA) NA 0 NA 0.713 1 NA NA NA NA NA LTS-016 chr10 47087994 49860258 2772265 * c(ZNF488, FRMPD2, CTSLP2, NA, PTPN20, GDF2, GDF10, NA, GLUD1P7, FAM35DP, NPY4R, NA, MAPK8, ARHGAP22, RBP3, LINC00842, NA, NA, HNRNPA1P33, FRMPD2B) 0.454495586392004 17 0.0462464625038245 1.23999586402362 857 0.477589821615092 8 4 4 -7.15197476446197 LTS-016 chr10 49860259 49929319 69061 * c(NA, WDFY4, ARHGAP22) 0 1 NA 1.25365398331742 25 2.20676437346627 8 8 0 -5.76441014515269 LTS-016 chr10 49929320 50950868 1021549 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, LRRC18, NA, OGDHL, WDFY4, DRGX, SLC18A3) 0.367836400670355 39 0.180617097093501 1.19223196558988 1370 0.745507834169674 8 5 3 -6.73650569281242 LTS-016 chr10 50950869 51050178 99310 * c(NA, OGDHL, PARG) NA 0 NA 1.24389556653681 116 0.243334270739536 8 NA NA -5.7644553549603 LTS-016 chr10 51050179 51391503 341325 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.486214177996861 39 0.530609844440851 3 NA NA -5.76611210869213 LTS-016 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 1.021 1 NA NA NA NA NA LTS-016 chr10 51537127 51620317 83191 * c(TIMM23, MSMB, NA, NCOA4, PARG) 0.482 1 NA 1.1230286473467 165 0.330615840066508 7 7 0 -5.7645452972327 LTS-016 chr10 51620318 63168472 11548155 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, PARG, CDK1, RHOBTB1) 0.440777004671166 58 0.088922548325641 1.16602134134972 2928 0.378282699926218 7 4 3 -6.96336974457587 LTS-016 chr10 63168473 71174736 8006264 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.455685267616498 44 0.0764315215349254 1.08944081539201 3764 0.289224391080935 7 4 3 -6.98283622667866 LTS-016 chr10 71174737 73574900 2400164 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.447153632710661 83 0.075953182836246 1.23177879618229 2591 0.396302407351542 8 4 4 -6.84442895640513 LTS-016 chr10 73574901 74671611 1096711 * c(MIR1256, MIR4676, MICU1, ANAPC16, OIT3, ASCC1, DDIT4, DNAJB12, PSAP, CDH23, MCU, CHST3, SPOCK2) 0.463822991902748 24 0.0209978863670622 1.11309818292965 862 0.279997024760942 8 4 4 -9.07822371858808 LTS-016 chr10 74671612 74767575 95964 * c(OIT3, P4HA1, PLA2G12B) 0.107 1 NA 1.15506610259852 87 0.196456928560615 7 7 0 -5.76747441172 LTS-016 chr10 74767576 76468851 1701276 * c(ECD, CHCHD1, MSS51, CFAP70, ADK, USP54, FUT11, ZSWIM8, DNAJC9, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, C10orf55, DNAJC9-AS1, P4HA1, MRPS16, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.284324275124341 9 0.204594110374664 1.12206360534308 2301 0.287794781687919 7 5 2 -6.73904481293454 LTS-016 chr10 76468852 76719805 250954 * c(ADK, KAT6B) 0.479 1 NA 0.970711835489075 25 0.114472893443528 6 6 0 -5.76728178592935 LTS-016 chr10 76719806 76994457 274652 * c(COMTD1, SAMD8, KAT6B, DUPD1, DUSP13, VDAC2) 0.423 1 NA 1.12354459449778 390 0.218906472709422 7 7 0 -5.7654829221493 LTS-016 chr10 76994458 76994651 194 * COMTD1 NA 0 NA 1.538 1 NA NA NA NA NA LTS-016 chr10 76994652 81074352 4079701 * c(DLG5-AS1, ZNF503-AS2, LINC00856, POLR3A, COMTD1, ZNF503-AS1, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, ZNF503, DLG5) 0.469325638391719 17 0.0333727830283724 1.26758843801045 1182 0.318326809012902 8 4 4 -8.03156439296878 LTS-016 chr10 81074353 91343607 10269255 * c(KLLN, BMS1P21, FAS-AS1, GRID1-AS1, MIR4679-1, MIR4679-2, MIR4678, PPIF, NRG3, ADIRF, LDB3, ANKRD22, AGAP11, LIPJ, CFL1P1, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, IFIT5, LRIT1, GHITM, GLUD1, GRID1, ANXA11, LIPM, LRIT2, IFIT2, IFIT1, IFIT3, FAS, SH2D4B, C10orf99, SLC16A12, LIPA, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, PANK1, CCSER2, FAM35A, RNLS, ZMIZ1, PTEN, STAMBPL1, ACTA2, NA NA NA NA NA NA NA NA NA LTS-016 RGR, LOC642361, FAM25A, LIPK, LIPN, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, MMRN2, TMEM254, TSPAN14, FAM213A, DYDC2, ATAD1, MBL1P, LIPF, CH25H, PAPSS2, CDHR1, OPN4, MINPP1) 0.431191146217688 129 0.0954628622389904 1.17431874566447 4844 0.444513457706865 8 4 4 -6.87741149310201 LTS-016 NA NA NA NA LTS-016 chr10 91343608 91371445 27838 * c(MIR107, PANK1) 0.045 1 NA 1.20345468779296 42 0.274710622744276 8 8 0 -5.7647599071741 LTS-016 chr10 91371446 92500757 1129312 * c(FLJ37201, HTR7, PANK1, LINC00865, KIF20B) 0.372610582155559 16 0.153339696425942 1.2493541809326 235 0.432877343407289 8 5 3 -6.7331400638862 LTS-016 chr10 92500758 105886106 13385349 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4685, MIR5692C2, LINC00502, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, NUDT9P1, SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, HECTD2, NA NA NA NA NA NA NA NA NA LTS-016 FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, DNTT, FGF8, CPEB3, NT5C2, PDCD11, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, CYP26C1, IDE, KIF11, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, EXOC6, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, FBXW4, SLIT1, SNORA12, TAF5, MIR608, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, TNKS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, BTAF1, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, ENTPD1, SH3PXD2A, SLK, ZNF518A) 0.33180517491035 240 0.0923438611142891 0.907162363201022 15672 0.26794692337034 6 4 2 -7.02813848992436 LTS-016 NA NA NA NA LTS-016 chr10 105886107 105923979 37873 * c(SFR1, CFAP43) 0 1 NA 0.798203032846829 73 0.612026667043189 5 5 0 -5.76441757783884 LTS-016 chr10 105923980 117823739 11899760 * c(MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, MIR4482, SMNDC1, SORCS1, GSTO2, ADD3, TRUB1, VTI1A, ADRA2A, ADRB1, CFAP58, DUSP5, SORCS3, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, MIR609, TCF7L2, TECTB, XPNPEP1, PLEKHS1, CFAP43, SHOC2, CASP7, AFAP1L2, ITPRIP, SMC3, BBIP1, GSTO1, DCLRE1A) 0.295156210522681 96 0.129472065248935 0.898015693980658 4909 0.317531498653988 6 4 2 -7.07298341497361 LTS-016 chr10 117823740 118031868 208129 * GFRA1 NA 0 NA 1.02018100447829 73 0.178082065975837 6 NA NA -5.78126575058589 LTS-016 chr10 118031869 118084425 52557 * c(GFRA1, CCDC172) NA 0 NA 0.702 1 NA NA NA NA NA LTS-016 chr10 118084426 118139534 55109 * CCDC172 0.094 1 NA 0.565618297158657 47 0.0992527632276584 3 3 0 -5.79973499887495 LTS-016 chr10 118139535 119308475 1168941 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.03634557493178 21 0.0310829152276233 0.697118670286299 1165 0.347619900602934 4 4 0 -6.8609705310566 LTS-016 chr10 119308476 122263189 2954714 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.0524646550073508 35 0.0284738712601187 0.594463699333217 1644 0.609139609558155 4 4 0 -6.78842342917114 LTS-016 chr10 122263190 122263266 77 * PLPP4 NA 0 NA 0.759 1 NA NA NA NA NA LTS-016 chr10 122263267 134693137 12429871 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, NA NA NA NA NA NA NA NA NA LTS-016 METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.0571810038470733 124 0.0541922947704156 0.665500832571866 6378 0.353531372051247 4 4 0 -6.7506105395974 LTS-016 NA NA NA NA LTS-016 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.301 1 NA NA NA NA NA LTS-016 chr10 134694406 134756359 61954 * CFAP46 0.0130521094787473 10 0.0398329846567724 0.399092790513254 177 0.781420489974526 10 10 0 -6.8685873401023 LTS-016 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.026 1 NA NA NA NA NA LTS-016 chr10 134884462 135438977 554516 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.0623501288004353 38 0.0371040691675576 0.691291841533767 1391 0.4473591014356 4 4 0 -6.8054491837796 LTS-016 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 0.637953911437049 7 0.192022940097816 4 NA NA -5.76497922048052 LTS-016 chr11 193025 193112 88 * SCGB1C1 0.414 1 NA 0.372 1 NA NA NA NA NA LTS-016 chr11 193113 1016779 823667 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.349517679515624 68 0.0728050589058391 0.956542596880199 2924 0.360205368896949 6 4 2 -6.73861136591479 LTS-016 chr11 1016780 1016834 55 * MUC6 0.235 1 NA 2.403 1 NA NA NA NA NA LTS-016 chr11 1016835 1283040 266206 * c(MUC2, MUC6, MUC5B) 0.337700065120227 86 0.101301041921548 1.16215389993841 991 0.703841916355709 9 6 3 -6.74436487262879 LTS-016 chr11 1283041 2869947 1586907 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.307921136545496 51 0.107840670417419 1.00953642663768 1787 0.342099306694262 7 5 2 -6.80222226936282 LTS-016 chr11 2869948 5776729 2906782 * c(LOC100506082, MIR4687, CDKN1C, TRIM22, OR7E12P, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, MRGPRG-AS1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, KCNQ1, MRGPRG, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, NA NA NA NA NA NA NA NA NA LTS-016 RHOG, OR51T1, OR51A4, OR51A2, ART1, TRIM6-TRIM34, NAP1L4, NUP98, SLC22A18, SLC22A18AS, UBQLN3, TRIM34, TRIM68, KCNQ1DN, MMP26, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, CARS, TRIM5) 0.318386012690715 163 0.0869839515747211 0.936010734189405 3517 0.467519220339901 6 4 2 -6.78215374134378 LTS-016 NA NA NA NA LTS-016 chr11 5776730 5809308 32579 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.384 1 NA 1.39870808117635 39 0.534290241421526 9 9 0 -5.76441026665376 LTS-016 chr11 5809309 5809392 84 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.522 1 NA NA NA NA NA LTS-016 chr11 5809393 17395273 11585881 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, NA NA NA NA NA NA NA NA NA LTS-016 LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.328421869388194 192 0.0747058622834336 0.895987192968495 10034 0.385158960845298 6 4 2 -6.94193915679752 LTS-016 NA NA NA NA LTS-016 chr11 17395274 17395324 51 * NCR3LG1 NA 0 NA 1.435 1 NA NA NA NA NA LTS-016 chr11 17395325 17615728 220404 * c(USH1C, OTOG, NCR3LG1, KCNJ11, ABCC8) 0.287638594467466 32 0.08911045610419 1.05823528836571 644 0.641998092569669 7 5 2 -6.7418814873515 LTS-016 chr11 17615729 17618380 2652 * OTOG 0 1 NA 1.49435636972978 7 1.93155625634579 10 10 0 -5.76441068534672 LTS-016 chr11 17618381 17804181 185801 * c(OTOG, KCNC1, MYOD1) 0.179450231509518 11 0.160651457849255 1.04197409991459 449 0.912295974814633 6 5 1 -6.73648627371037 LTS-016 chr11 17804182 18260753 456572 * c(SAA2-SAA4, SAAL1, MRGPRX3, MRGPRX4, SERGEF, KCNC1, LOC494141, SAA2, SAA3P, SAA4, TPH1) 0.107568301742577 3 0.174359781295267 0.854568522425712 429 0.241470356268532 5 5 0 -6.83546302460695 LTS-016 chr11 18260754 18267463 6710 * c(SAA2-SAA4, SAA2) 0.475 1 NA 0.996112564737078 43 0.329483902950407 6 6 0 -5.76447443635212 LTS-016 chr11 18267464 18720551 453088 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SPTY2D1, TMEM86A, LDHAL6A, GTF2H1, LDHA, LDHC, UEVLD, SAA1, SAA2, TSG101) 0.353224461259607 10 0.075735211244323 0.820163941423315 783 0.228686639329633 6 4 2 -6.86389000897152 LTS-016 chr11 18720552 18722483 1932 * TMEM86A NA 0 NA 1.085 1 NA NA NA NA NA LTS-016 chr11 18722484 34513921 15791438 * c(LOC100126784, C11orf91, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, CSTF3, SLC5A12, METTL15, IMMP1L, ELF5, ANO5, FANCF, FSHB, KIAA1549L, SVIP, ABTB2, MRGPRX1, GAS2, FBXO3, ELP4, LINC00294, IGSF22, LUZP2, CSTF3-AS1, DCDC1, KCNA4, FIBIN, NAV2-AS4, LMO2, CAPRIN1, DKFZp686K1684, NELL1, CCDC73, BDNF-AS, PAX6, WT1-AS, NA NA NA NA NA NA NA NA NA LTS-016 ZDHHC13, NAT10, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, PRRG4, E2F8, QSER1, CSRP3, KIF18A, BBOX1, CAT, PTPN5, NAV2, CCDC34, SLC6A5, DEPDC7, CD59) 0.319078649033698 151 0.0948485610667017 0.91001728922069 6909 0.276044290553893 6 4 2 -7.05126014396842 LTS-016 NA NA NA NA LTS-016 chr11 34513922 44080021 9566100 * c(MIR670, LOC100507205, ALKBH3-AS1, MIR3973, MIR1343, C11orf74, LDLRAD3, ELF5, ALKBH3, FJX1, PAMR1, EHF, COMMD9, C11orf96, ACCSL, HNRNPKP3, MIR129-2, APIP, HSD17B12, TRIM44, TTC17, LRRC4C, RAG1, RAG2, SLC1A2, TRAF6, SEC14L1P1, PRR5L, PDHX, API5, CD44) 0.342863998745282 40 0.0704184562054507 0.856733792227667 2290 0.271049945966237 5 3 2 -7.29535216769429 LTS-016 chr11 44080022 47447583 3367562 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, ACCSL, ARHGAP1, LRP4, MDK, MYBPC3, PHF21A, ACP2, SLC35C1, AMBRA1, PRDM11, PSMC3, SYT13, ALX4, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.32396526409608 62 0.0798824840868231 0.951104475693073 3861 0.271982816764524 6 4 2 -6.76571830093703 LTS-016 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.799 1 NA NA NA NA NA LTS-016 chr11 47447717 47857253 409537 * c(CELF1, C1QTNF4, PTPMT1, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN, AGBL2) 0.303775622310555 20 0.0629837907301303 0.838865618574573 881 0.195575861110669 6 4 2 -7.05854135204558 LTS-016 chr11 47857254 48166267 309014 * c(NUP160, PTPRJ) 0.274 1 NA 0.827477076661151 157 0.207208959543833 5 5 0 -5.76709526094777 LTS-016 chr11 48166268 48285782 119515 * c(OR4X2, OR4B1, OR4X1, PTPRJ) 0.244051008290258 4 0.170188865675754 0.864706676903192 132 0.708289309989815 5 4 1 -6.74160208856313 LTS-016 chr11 48285783 48285856 74 * OR4X1 0.371 1 NA 6.13 1 NA NA NA NA NA LTS-016 chr11 48285857 48373710 87854 * c(OR4C3, OR4S1, OR4X1, OR4C45) 0.328199639939277 42 0.07128640846978 1.63502518717381 127 2.47608166761456 18 12 6 -6.741784680021 LTS-016 chr11 48373711 48373748 38 * OR4C45 0.391 1 NA 2.225 1 NA NA NA NA NA LTS-016 chr11 48373749 48387983 14235 * OR4C45 0.346475906720044 42 0.0458187422662074 1.88517600618544 70 1.44814585022354 20 13 7 -6.73809599934929 LTS-016 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.886 1 NA NA NA NA NA LTS-016 chr11 48387986 51516257 3128272 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.321066250997728 38 0.102530292508773 0.969398927485865 483 0.632976555200387 6 4 2 -6.76010417850649 LTS-016 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.815655463476075 6 0.153004575094995 5 NA NA -5.76444279671493 LTS-016 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.332 1 NA 0.776023131001842 17 0.724365219063033 5 5 0 -5.76454372851689 LTS-016 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.323548852536968 6 0.0457806363724519 0.987702765264075 77 0.760300724086066 9 6 3 -6.8307391371427 LTS-016 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.547 1 NA NA NA NA NA LTS-016 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) 0 1 NA 0.629231035477824 68 0.849651491199143 4 4 0 -5.76449493745499 LTS-016 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.918 1 NA NA NA NA NA LTS-016 chr11 55432533 57414554 1982022 * c(PRG3, OR5I1, OR8I2, APLNR, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, SMTNL1, YPEL4, OR5L2, TIMM10, OR10AG1, OR5J2, OR9G4, SLC43A3, OR5F1, OR5AP2, RTN4RL2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, MIR130A, P2RX3, OR8U8, OR9G9, PRG2, SSRP1, SERPING1, OR8J3, NA NA NA NA NA NA NA NA NA LTS-016 TRIM51, SLC43A1, TNKS1BP1, UBE2L6) 0.315877181325007 68 0.0943525462564452 0.994557645665477 1984 0.47213390183283 6 4 2 -6.78896454483698 LTS-016 NA NA NA NA LTS-016 chr11 57414555 57414670 116 * YPEL4 NA 0 NA 0.736 1 NA NA NA NA NA LTS-016 chr11 57414671 59830103 2415433 * c(MIR3162, TMX2-CTNND1, GLYAT, CLP1, CNTF, CTNND1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, DTX4, ZDHHC5, GIF, SELENOH, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, TMX2, MRPL16, FAM111A, BTBD18, STX3, TCN1, ZFP91, OR10W1, OR10V2P, GLYATL1, MS4A3, LPXN) 0.313950649490053 38 0.0842899554280327 0.920586508888714 2499 0.354318570362091 6 4 2 -6.81699988779948 LTS-016 chr11 59830104 59831823 1720 * MS4A3 0 1 NA 1.1344751347849 5 0.725939598038294 7 7 0 -5.76441159817525 LTS-016 chr11 59831824 60468857 637034 * c(MS4A2, MS4A6E, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, MS4A8, MS4A14, MS4A1, MS4A3) 0.264761253125779 11 0.131892725004418 0.930990744424485 588 0.317616100630336 5 4 1 -6.86466781822743 LTS-016 chr11 60468858 60470750 1893 * MS4A8 NA 0 NA 1.066 1 NA NA NA NA NA LTS-016 chr11 60470751 61091206 620456 * c(PTGDR2, DDB1, MS4A15, VWCE, ZP1, PRPF19, MS4A10, SLC15A3, PGA5, TMEM132A, VPS37C, PGA3, PGA4, TMEM109, CCDC86, MS4A8, CD5, CD6) 0.224850241710476 14 0.168925303734397 1.0146302933129 1188 0.354221504826095 6 5 1 -6.76955156485253 LTS-016 chr11 61091207 61277031 185825 * c(MIR4488, DDB1, CYB561A3, PPP1R32, TKFC, LRRC10B, TMEM216, TMEM138, SDHAF2, CPSF7) 0.324 1 NA 0.964225018395367 661 0.231307852630007 6 6 0 -5.76458298165097 LTS-016 chr11 61277032 61730307 453276 * c(MIR1908, RPLP0P2, FEN1, DKFZP434K028, LRRC10B, FADS1, FADS3, RAB3IL1, MIR611, BEST1, MYRF, TMEM258, DAGLA, SYT7, FADS2) 0.321410044796573 13 0.0321113846733682 1.00787344305338 1163 0.256163596014532 6 4 2 -6.99296070876635 LTS-016 chr11 61730308 63668479 1938172 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, SCGB1D2, SCGB1D1, PLA2G16, CHRM1, SLC22A9, HRASLS5, C11orf84, EEF1G, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, FTH1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, INCENP, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, BEST1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NA NA NA NA NA NA NA NA NA LTS-016 ZBTB3, ASRGL1, INTS5, LGALS12, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.292610229643984 33 0.121560458520678 0.924375979571983 3775 0.358107805612778 6 4 2 -6.84232619915028 LTS-016 NA NA NA NA LTS-016 chr11 63668480 66620187 2951708 * c(NAALADL1, TMEM262, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, DPP3, KCNK7, LOC100996455, RASGRP2, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CDCA5, BATF2, SLC22A12, CATSPER1, COX8A, CST6, CTSW, GPHA2, MARK2, ESRRA, FAU, TIGD3, FKBP2, ATG2A, FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, TMEM151A, PRDX5, BRMS1, NA NA NA NA NA NA NA NA NA LTS-016 TEX40, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, RCOR2, MACROD1, SAC3D1, EFEMP2, SLC29A2, DNAJC4, MALAT1, SPDYC, PCNX3, ARL2, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, OVOL1, KCNK4, PC, TRMT112, PLCB3, CCDC87, PPP2R5B, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, BBS1, PYGM, MAP4K2, RBM4, RELA, DPF2, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SF1, ZFPL1, C11orf80, NAA40, MUS81, FOSL1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, SART1, AP5B1, FIBP, NRXN2, RIN1, CCS, RCE1) 0.307670543532932 90 0.103826011669167 0.971306564644166 9447 0.291246991577431 6 4 2 -6.80541047535964 LTS-016 NA NA NA NA LTS-016 chr11 66620188 66999400 379213 * c(KDM2A, C11orf86, RHOD, PC, LRFN4, SYT12) NA 0 NA 1.02062017421765 324 0.20858453872319 6 NA NA -5.78706903992801 LTS-016 chr11 66999401 67192555 193155 * c(LOC100130987, GRK2, KDM2A, CLCF1, ANKRD13D, TBC1D10C, SSH3, PPP1CA, CARNS1, POLD4, RAD9A) 0.457 1 NA 1.29534966192306 667 0.291406731126641 8 8 0 -5.76597157104256 LTS-016 chr11 67192556 73131083 5938528 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4691, MIR4692, IL18BP, SHANK2-AS1, CDK2AP2, TCIRG1, STARD10, CHKA, MRGPRD, MRGPRF, ARAP1, CPT1A, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, NUDT8, ANAPC15, MYEOV, ALG1L9P, GSTP1, TBX10, IGHMBP2, INPPL1, KRTAP5-9, KRTAP5-10, GPR152, DOC2GP, FLJ42102, PHOX2A, NA NA NA NA NA NA NA NA NA LTS-016 LRP5, MIR139, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, P2RY2, P2RY6, GAL, KMT5B, PDE2A, CABP2, C11orf24, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, CABP4, CORO1B, CARNS1, KRTAP5-8, PTPRCAP, CCND1, RPS6KB2, FAM86C2P, TMEM134, CLPB, UNC93B1, RELT, PPFIA1, FADD, ATG16L2, AIP, ACY3, PITPNM1, TESMIN, ARHGEF17, FCHSD2, FGF19) 0.42708607953901 138 0.111922629395975 1.27880331657825 6244 0.388235857021262 8 4 4 -6.75098973707403 LTS-016 NA NA NA NA LTS-016 chr11 73131084 73135958 4875 * FAM168A NA 0 NA 1.125 1 NA NA NA NA NA LTS-016 chr11 73135959 82444210 9308252 * c(KCNE3, MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, FAM181B, FAM168A, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, THAP12, EMSY, USP35, PLEKHB1, NA NA NA NA NA NA NA NA NA LTS-016 RAB6A, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.434597874253885 112 0.101459611506514 1.2216069323644 6094 0.382041534893296 8 4 4 -6.77989736424356 LTS-016 NA NA NA NA LTS-016 chr11 82444211 89486832 7042622 * c(SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, RAB30, GRM5, ANKRD42, TRIM77, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, CREBZF, CCDC90B, CCDC81, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.458923388695409 46 0.0272150853308458 1.13439651891715 3320 0.280289521486345 7 4 3 -8.44411093083935 LTS-016 chr11 89486833 89486855 23 * character(0) NA 0 NA 0.939 1 NA NA NA NA NA LTS-016 chr11 89486856 89608204 121349 * c(TRIM49, TRIM64B) 0.399 1 NA 0.683119629520294 38 0.403541290647522 4 4 0 -5.76500231607412 LTS-016 chr11 89608205 89707604 99400 * c(TRIM64, TRIM64B) NA 0 NA 17.294 1 NA NA NA NA NA LTS-016 chr11 89707605 92532677 2825073 * c(NAALAD2, MIR4490, FAT3, CHORDC1, TRIM49C, UBTFL1) 0.426490640085176 13 0.0881328397131139 1.28332083002183 489 1.04012775435214 8 4 4 -6.74505815370185 LTS-016 chr11 92532678 92577071 44394 * FAT3 0.055 1 NA 1.28456015928768 96 0.279456759789605 8 8 0 -5.76463129231724 LTS-016 chr11 92577072 92715916 138845 * c(FAT3, MTNR1B) 0.311313055732505 9 0.224373448617354 1.25680994227504 242 0.543729286046131 7 5 2 -6.73984560329374 LTS-016 chr11 92715917 92718127 2211 * MTNR1B 0.458 1 NA 1.5606916551978 7 1.22608602976339 10 10 0 -5.76441018417686 LTS-016 chr11 92718128 114393652 21675525 * c(LOC100132078, WTAPP1, NCAM1-AS1, MIR1304, MIR4301, MIR1260B, MIR3920, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, JRKL-AS1, LOC101054525, RBM7, YAP1, GPR83, CARD16, TMEM123, SLC36A4, COLCA2, PIH1D2, NXPE1, CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, DEUP1, C11orf65, DDX10, DLAT, DRD2, FDX1, ENDOD1, EXPH5, SIK2, PANX1, FUT4, ANGPTL5, ANKK1, REXO2, TIMM8B, GRIA4, C11orf54, NA NA NA NA NA NA NA NA NA LTS-016 GUCY1A2, BIRC2, BIRC3, HSPB2, HTR3A, C11orf53, HEPHL1, PLET1, IL18, ACAT1, VSTM5, IZUMO1R, KDM4E, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, NCAM1, ATM, NNMT, NPAT, CWC15, PGR, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, ANKRD49, TTC12, PPP2R1B, C11orf57, ELMOD1, KDM4D, TEX12, SMCO4, CEP126, ARHGAP20, USP28, PTS, CARD18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RDX, AASDHPPT, SCARNA9, SDHD, MMP27, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, SNORA8, SLN, SNORA18, SNORA40, SNORD5, TRPC6, ZBTB16, TAF1D, DYNC2H1, CCDC82, ALG9, PDGFD, CUL5, TMPRSS5, CASP1, CASP4, CASP5, BCO2, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, DIXDC1, CEP295, ZC3H12C, JRKL, MTMR2, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, MED17, CEP57) 0.436565263722196 249 0.082264942278431 1.17925271941942 12507 0.331529508701295 8 4 4 -7.17508849309665 LTS-016 NA NA NA NA LTS-016 chr11 114393653 114399525 5873 * NXPE1 0 1 NA 1.04077175394797 15 0.868882040325383 7 7 0 -5.76442630372143 LTS-016 chr11 114399526 115045778 646253 * c(NXPE1, NXPE2, CADM1, NXPE4) 0.377910455583071 12 0.122511471324365 1.24617399617853 171 0.763265884555517 8 5 3 -6.73351130535269 LTS-016 chr11 115045779 116629905 1584127 * c(CADM1, LINC00900, BUD13) 0.47 1 NA 1.19775248902754 157 0.251448685683439 8 8 0 -5.7940384551952 LTS-016 chr11 116629906 120707644 4077739 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, TMEM136, OAF, CEP164, PHLDB1, ARHGEF12, SIK3, BACE1, TRIM29, SLC37A4, RNF214, POU2F3, HINFP, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, NA NA NA NA NA NA NA NA NA LTS-016 TMPRSS4, IFT46, DSCAML1, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, LOC649133, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.445893352785438 140 0.0754506553149902 1.20721719356813 7367 0.418022195354436 8 4 4 -6.85388506730623 LTS-016 NA NA NA NA LTS-016 chr11 120707645 120738799 31155 * GRIK4 0 1 NA 1.66854972209578 9 1.26397449649025 11 11 0 -5.76441358020551 LTS-016 chr11 120738800 121008118 269319 * c(TBCEL, GRIK4, TECTA) 0.28511884122301 10 0.21312711387026 1.2187469704451 430 1.32185886693798 7 5 2 -6.73616574895716 LTS-016 chr11 121008119 121360884 352766 * c(SC5D, SORL1, TECTA) 0.493 1 NA 1.13521160111403 209 0.235443544471746 7 7 0 -5.76740097177937 LTS-016 chr11 121360885 130319732 8958848 * c(PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, HEPACAM, FLI1, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, ZBTB44, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, NA NA NA NA NA NA NA NA NA LTS-016 MIR100HG, PATE2, PATE4, ST3GAL4-AS1, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SORL1, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, ESAM, EI24, FEZ1, ARHGAP32) 0.437342055765293 167 0.0919151596872535 1.1865501242322 7179 0.449055409288889 8 4 4 -6.8463265973653 LTS-016 NA NA NA NA LTS-016 chr11 130319733 130332338 12606 * ADAMTS15 0.47 1 NA 1.60927815410442 15 0.617267187652463 10 10 0 -5.76443902343947 LTS-016 chr11 130332339 134856661 4524323 * c(LOC100128239, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, LOC283177, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.146671599184811 9 0.223802368173351 1.17956467918611 1719 0.339584968756026 8 7 1 -6.81610793997087 LTS-016 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.09 1 NA NA NA NA NA LTS-016 chr12 90923 247900 156978 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.314 1 NA 1.02449097278793 41 0.291899984959767 6 6 0 -5.76978069460273 LTS-016 chr12 247901 7805500 7557600 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, APOBEC1, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NA NA NA NA NA NA NA NA NA LTS-016 NINJ2, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CCND2, CD4, CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.333232870795018 205 0.0848832413262968 0.933856365617166 9300 0.376017133516879 6 4 2 -6.75692907423821 LTS-016 NA NA NA NA LTS-016 chr12 7805501 7807147 1647 * APOBEC1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-016 chr12 7807148 9581773 1774626 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CLEC6A, GDF3) 0.305599172401974 50 0.109122999315414 0.868585275899744 2149 0.344910744716762 6 4 2 -6.8811424903221 LTS-016 chr12 9581774 9582062 289 * DDX12P NA 0 NA 1.447 1 NA NA NA NA NA LTS-016 chr12 9582063 9717935 135873 * DDX12P NA 0 NA 1.47681958163164 111 0.459980761268448 10 NA NA -5.76528834041671 LTS-016 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.623 1 NA NA NA NA NA LTS-016 chr12 9747241 10573094 825854 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.321169233730956 25 0.0882163439127542 0.807691690682344 1090 0.262551322791249 6 4 2 -6.96429092626937 LTS-016 chr12 10573095 10586802 13708 * c(KLRC2, KLRC3) NA 0 NA 1.44076236277404 45 0.502490235092819 9 NA NA -5.76443610094676 LTS-016 chr12 10586803 10586996 194 * c(KLRC2, KLRC3) NA 0 NA 1.024 1 NA NA NA NA NA LTS-016 chr12 10586997 11215070 628074 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.274891722975771 40 0.11160979416631 0.84195130305351 752 0.41351490436565 5 4 1 -6.8567644313064 LTS-016 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.115 1 NA NA NA NA NA LTS-016 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) NA 0 NA 0.113719090226426 47 0.0961687250709717 0 NA NA -5.78695615645625 LTS-016 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.013 1 NA NA NA NA NA LTS-016 chr12 11285579 33592681 22307103 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, TAS2R30, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, NA NA NA NA NA NA NA NA NA LTS-016 GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, OVCH1, SYT10, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.311489827559011 242 0.0962535805808309 0.886316752203758 11775 0.380403226446953 6 4 2 -7.27611516928399 LTS-016 NA NA NA NA LTS-016 chr12 33592682 34182671 589990 * c(SYT10, ALG10) NA 0 NA 0.941780832660774 67 0.259213684162291 6 NA NA -5.76550916241228 LTS-016 chr12 38710341 38710819 479 * ALG10B 0.327 1 NA 0.830355689591498 7 0.203181246791182 5 5 0 -5.76441574366393 LTS-016 chr12 38710820 51637241 12926422 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, LARP4, SLC2A13, LRRK2, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, CNTN1, COL2A1, ASB8, PRICKLE1, BCDIN3D, ALG10B, CPNE8, ANO6, ARID2, ABCD2, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, C12orf40, GXYLT1, TMPRSS12, RACGAP1, SENP1, PDZRN4, C1QL4, H1FNT, NA NA NA NA NA NA NA NA NA LTS-016 OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, KIF21A, SLC48A1, PRKAG1, LMBR1L, PRPH, TWF1, DIP2B, NCKAP5L, RNY5, HIGD1C, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 KMT2D, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23, DAZAP2) 0.325051417310057 225 0.0844191796739663 0.897730027774432 12435 0.724147324927996 6 4 2 -6.81548879084429 LTS-016 NA NA NA NA LTS-016 chr12 51637242 51707626 70385 * c(BIN2, SMAGP, DAZAP2) 0.321 1 NA 0.884138391779291 105 0.223606335792601 6 6 0 -5.76949234020157 LTS-016 chr12 51707627 52100438 392812 * c(GALNT6, CELA1, BIN2, SCN8A, SLC4A8) 0.298356325744791 10 0.0624952442635082 0.916478359181732 376 0.345249196701013 7 5 2 -6.80070646011386 LTS-016 chr12 52100439 53165940 1065502 * c(KRT71, KRT74, KRT72, KRT80, GRASP, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, ANKRD33, KRT77, KRT1, KRT2, KRT5, KRT6A, KRT6B, KRT7, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, ATG101, SCN8A, ACVR1B, KRT75, ACVRL1) 0.272656040086632 51 0.127160001110227 1.00019587154093 2073 0.539155800469098 7 5 2 -6.77830019069429 LTS-016 chr12 53165941 53227803 61863 * c(KRT79, KRT3, KRT4, KRT76) 0.322 1 NA 0.963914395541199 207 0.199802677036495 6 6 0 -5.76448189498885 LTS-016 chr12 53227804 53563941 336138 * c(KRT78, EIF4B, TNS2, LOC283335, KRT79, IGFBP6, KRT8, KRT18, CSAD, SOAT2, SPRYD3) 0.386096226633418 6 0.0671912692741153 0.982005452688406 694 1.56226796388768 5 3 2 -6.7436501029914 LTS-016 chr12 53563942 58090211 4526270 * c(HOTAIR, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, CDK2, RNF41, GDF11, CNPY2, DCTN2, PTGES3, OS9, ATF7, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, MYL6B, CS, DGKA, DDIT3, DTX3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, OR6C74, OR6C3, B4GALNT1, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, NA NA NA NA NA NA NA NA NA LTS-016 GLI1, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, ITGB7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MARS, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, CSAD, PDE1B, IL23A, ATP5G2, PFDN5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 GPR84, PRR13, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, RPL41, RPS26, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, PIP4K2C, AAAS, INHBE, PYM1, SARNP, ZC3H10, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, COQ10A, CD63, ESPL1, TESPA1, ZBTB39, PAN2) 0.320035267983292 106 0.0797026865230634 0.911208944052536 10854 0.237020004231574 6 4 2 -6.88719210737946 LTS-016 NA NA NA NA LTS-016 chr12 58090212 58115206 24995 * OS9 0.085 1 NA 0.613149241613895 57 0.140250561228153 4 4 0 -5.76832327390407 LTS-016 chr12 58115207 75442059 17326853 * c(LOC100130075, AGAP2-AS1, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, TSFM, CTDSP2, CDK4, TMEM5, CCT2, AVIL, FRS2, OS9, CPSF6, WIF1, IRAK3, XPOT, C12orf56, AGAP2, RAB3IP, LRIG3, TPH2, CPM, BEST3, C12orf66, CYP27B1, ZFC3H1, RPSAP52, RAB21, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, METTL21B, KCNMB4, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, NA NA NA NA NA NA NA NA NA LTS-016 IFNG, KCNC2, LRRC10, FLJ41278, MIRLET7I, LYZ, MIR26A2, MDM2, METTL1, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TSPAN31, TBC1D15, MIR548C, TSPAN8, MRS2P2, YEATS4, HMGA2, THAP2, LLPH, DYRK2, LGR5, ATP23, SLC16A7, HELB, MARCH9, USP15) 0.327384721021682 129 0.11308639968451 0.888071094203188 8832 0.305247312654439 6 4 2 -7.28842044809411 LTS-016 NA NA NA NA LTS-016 chr12 75442060 75444160 2101 * KCNC2 NA 0 NA 0.73 1 NA NA NA NA NA LTS-016 chr12 75444161 77415791 1971631 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2) 0.363513745574812 20 0.0442372491292837 0.812679966916473 1320 0.223351300276686 5 3 2 -6.99932586437093 LTS-016 chr12 77415792 96661515 19245724 * c(PGAM1P5, MIR1252, MIR3685, POC1B-GALNT4, MIR4699, MIR548AL, MIR5700, PLXNC1, METAP2, KERA, NUDT4, CCDC38, AMDHD1, TSPAN19, E2F7, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, ELK3, LINC01619, MGAT4C, POC1B, OTOGL, MRPL42, CCDC59, HAL, LINC00936, C12orf74, PTPRQ, MKRN9P, LTA4H, LUM, KITLG, LINC00615, PLEKHG7, MIR331, MYF5, MYF6, PPP1R12A, ATP2B1, NTS, PAWR, CEP83, NA NA NA NA NA NA NA NA NA LTS-016 SLC6A15, VEZT, FGD6, NDUFA12, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, SNRPF, SYT1, MIR617, MIR618, BTG1, NR2C1, LOC728084, UBE2N, ACSS3, CEP290, ALX1, USP44, EEA1, LRRIQ1, METTL25, PPFIA2, GALNT4, CRADD, LIN7A, SOCS2, NAV3, C12orf29, RASSF9) 0.327034673533938 103 0.0850710333532011 0.883166326627241 7361 0.280336715220865 6 4 2 -7.54767482395878 LTS-016 NA NA NA NA LTS-016 chr12 96661516 97346558 685043 * c(NEDD1, ELK3, CDK17) 0.25928645595168 9 0.146746190561951 0.797939942659375 595 0.24146556571644 5 4 1 -6.7674395191481 LTS-016 chr12 97346559 99167002 1820444 * c(TMPO-AS1, MIR1251, MIR4303, NEDD1, SLC9A7P1, IKBIP, RMST, APAF1, MIR135A2, SLC25A3, ANKS1B, LOC643711, LOC643770, SNORA53, TMPO) 0.447258648071395 13 0.056724254297796 1.13106553615645 672 0.289768813350483 7 4 3 -7.03724629212821 LTS-016 chr12 99167003 99174932 7930 * ANKS1B NA 0 NA 0.768 1 NA NA NA NA NA LTS-016 chr12 99174933 109494680 10319748 * c(USP30-AS1, LOC100287944, MIR1827, MIR3652, MIR3922, LOC100505978, CKAP4, PRDM4, PWP1, FICD, DEPDC4, C12orf45, ASCL4, BTBD11, SPIC, ANO4, CMKLR1, CRY1, ALDH1L2, SLC5A8, DAO, FAM71C, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, HCFC2, TMEM119, IGF1, C12orf42, C12orf75, ARL1, ASCL1, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, NT5DC3, PMCH, SSH1, PARPBP, NA NA NA NA NA NA NA NA NA LTS-016 RIC8B, APPL2, DRAM1, SVOP, STAB2, GOLGA2P5, SCYL2, POLR3B, ANKS1B, CHPT1, RFX4, SELPLG, ACTR6, TDG, HSP90B1, C12orf73, LOC728739, TXNRD1, NUP37, GNPTAB, MTERF2, GLT8D2, SLC41A2, USP30, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.324984289906129 156 0.087766894621852 0.886503058383759 7842 0.557298947746705 6 4 2 -6.86672140087381 LTS-016 NA NA NA NA LTS-016 chr12 109494681 109495680 1000 * USP30 NA 0 NA 1.288 1 NA NA NA NA NA LTS-016 chr12 109495681 109973730 478050 * c(ALKBH2, FOXN4, MYO1H, ACACB, UNG, KCTD10, USP30, UBE3B) 0.328964440835625 24 0.114353879613281 0.968791334886177 1306 1.51273639844325 6 4 2 -6.74144232099187 LTS-016 chr12 109973731 110226531 252801 * c(MMAB, MVK, TRPV4, FAM222A, FAM222A-AS1, UBE3B) 0 1 NA 1.04159808140294 270 0.546925355969638 7 7 0 -5.7661194732686 LTS-016 chr12 110226532 110318235 91704 * c(MIR4497, GLTP, TRPV4) 0.331 1 NA 1.03349578496473 117 0.198887536403748 7 7 0 -5.77044069405622 LTS-016 chr12 110318236 111779792 1461557 * c(LINC01405, ARPC3, RAD9B, PPTC7, CCDC63, CUX2, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, ANAPC7, VPS29, PPP1CC, TCTN1, TCHP, HVCN1, ANKRD13A, GIT2) 0.113588397266125 8 0.147537828079058 0.857552934146283 1918 0.22796973994361 5 5 0 -6.93765409188224 LTS-016 chr12 111779793 111798553 18761 * c(FAM109A, CUX2) 0.31 1 NA 0.964860643518998 69 0.34472052693157 6 6 0 -5.76441916968365 LTS-016 chr12 111798554 113274293 1475740 * c(SH2B3, TRAFD1, ERP29, FAM109A, ALDH2, RPH3A, HECTD4, MAPKAPK5-AS1, PTPN11, RPL6, ATXN2, NAA25, ACAD10, BRAP, MAPKAPK5, ADAM1A, TMEM116) 0.347966389749247 30 0.0445217369098653 0.887904233873602 1975 0.236626122652785 6 4 2 -6.82598156285969 LTS-016 chr12 113274294 122694367 9420074 * c(LINC00173, MIR1178, PXN-AS1, NRAV, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, DTX1, PLBD2, MLXIP, RPH3A, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, CFAP73, TMEM233, MSI1, NOS1, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, NA NA NA NA NA NA NA NA NA LTS-016 TRIAP1, PLA2G1B, TPCN1, RHOF, VSIG10, TESC, PRKAB1, WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, TBX5, TBX3, HNF1A, MIR620, DDX54, B3GNT4, C12orf49, SLC8B1, RNF34, COQ5, RASAL1, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, RITA1, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, MLEC, RBM19, RNF10) 0.296155997803062 202 0.110434574328571 0.940387209092984 8628 0.358549162806965 6 4 2 -6.84798461160669 LTS-016 NA NA NA NA LTS-016 chr12 122694368 123199571 505204 * c(CLIP1-AS1, HCAR2, ZCCHC8, DIABLO, CLIP1, VPS33A, RSRC2, HCAR3, KNTC1) 0.272238951364608 13 0.0958196088277208 0.832299785108795 925 0.303158147184406 5 4 1 -6.88139095903786 LTS-016 chr12 123199572 123200806 1235 * HCAR3 0.318024284423111 4 0.0956011680542311 1.3733782800358 40 0.88966657215801 16 11 5 -6.73344475981428 LTS-016 chr12 123200807 124399013 1198207 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65) 0.319102822560321 24 0.108698551048301 0.887149651660579 2539 0.222546346144235 6 4 2 -6.83956987663932 LTS-016 chr12 124399014 133419709 9020696 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-016 CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.301311089986767 107 0.125887152669343 0.959178922488144 5139 0.432618965555616 6 4 2 -6.79699989152099 LTS-016 NA NA NA NA LTS-016 chr12 133419710 133420534 825 * CHFR NA 0 NA 0.525 1 NA NA NA NA NA LTS-016 chr12 133420535 133698537 278003 * c(ZNF605, ZNF891, CHFR, ZNF140) 0.330626735105822 27 0.108720177166324 0.819462717504506 669 0.213659448702534 6 4 2 -6.82512750598743 LTS-016 chr12 133698538 133812708 114171 * c(ZNF891, ZNF268, ANHX, ZNF10) NA 0 NA 0.836199974156859 315 0.184553262345595 5 NA NA -5.76693343917858 LTS-016 chr13 19271620 19801420 529801 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.038 1 NA 0.617645653146628 80 0.32836510413551 4 4 0 -5.77659712311005 LTS-016 chr13 19801421 24880817 5079397 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.0645330499973187 44 0.0598179187518715 0.60697961104139 2595 0.195552584221509 4 4 0 -7.26011979305115 LTS-016 chr13 24880818 24890157 9340 * c(SPATA13, C1QTNF9) 0.0303674542609371 2 0.0480832611206852 0.633282637968245 14 0.331996292843065 6 6 0 -6.74577431182255 LTS-016 chr13 24890158 24890228 71 * c(SPATA13, C1QTNF9) 0.057 1 NA 0.201 1 NA NA NA NA NA LTS-016 chr13 24890229 24895673 5445 * c(SPATA13, C1QTNF9) 0.218842500922883 2 0.0834386001800126 1.35977277079596 34 1.132015044731 19 15 4 -6.7346563579657 LTS-016 chr13 24895674 25049676 154003 * c(PARP4, SPATA13, C1QTNF9) 0.172581093623381 7 0.122740143625233 0.61103591530631 113 0.265258886197429 5 4 1 -6.93859649446794 LTS-016 chr13 25049677 25052420 2744 * PARP4 0.035 1 NA 0.616314204295218 11 0.446575718918161 4 4 0 -5.76444664872889 LTS-016 chr13 25052421 25601832 549412 * c(PARP4, TPTE2P6, ATP12A, CENPJ, RNF17, TPTE2P1) 0.046266472112823 19 0.0206055973772869 0.598983303370352 521 0.455350357173399 4 4 0 -6.76432908905232 LTS-016 chr13 25601833 25670826 68994 * PABPC3 NA 0 NA 0.560815167572528 28 0.154405786243252 3 NA NA -5.7798313996235 LTS-016 chr13 25670827 25670851 25 * PABPC3 0.435 1 NA 1.915 1 NA NA NA NA NA LTS-016 chr13 25670852 25671292 441 * PABPC3 0.401589267201617 20 0.0516081133972271 1.73044162875024 32 0.91017545277749 19 11 8 -6.73313523071488 LTS-016 chr13 25671293 25671786 494 * PABPC3 NA 0 NA 1.54602840078031 10 1.57396640158973 10 NA NA -5.76441013510393 LTS-016 chr13 25671787 25671820 34 * PABPC3 NA 0 NA 0.867 1 NA NA NA NA NA LTS-016 chr13 25671821 25821603 149783 * c(AMER2, PABPC3, MTMR6) 0.039 1 NA 0.60329780129016 279 0.141253764012535 4 4 0 -5.79898224555015 LTS-016 chr13 25821604 39586343 13764740 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00366, LINC00398, LINC00423, LINC00457, LINC00571, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, STOML3, EEF1DP3, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, NA NA NA NA NA NA NA NA NA LTS-016 ALG5, HMGB1, FREM2, PDX1, RASL11A, SHISA2, SERTM1, LINC00547, SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, UFM1, ATP8A2, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, TRPC4, CCDC169, PROSER1, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.0503749214240322 123 0.0264834737823402 0.624504653155647 7243 0.264177755997708 4 4 0 -7.0522076912733 LTS-016 NA NA NA NA LTS-016 chr13 39586344 39587166 823 * PROSER1 0.057 1 NA 0.608978698498571 13 0.189520379798518 4 4 0 -5.7644947306373 LTS-016 chr13 39587167 40363726 776560 * c(MIR4305, LHFP, NHLRC3, COG6, PROSER1) 0.147645099018074 9 0.181682491665482 0.676401462042615 377 0.241147785923941 4 4 0 -6.90802939901136 LTS-016 chr13 40363727 40363878 152 * COG6 0.043 1 NA 0.858528858534066 3 0.155320099579331 5 5 0 -5.76442446888066 LTS-016 chr13 40363879 52709938 12346060 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, NA NA NA NA NA NA NA NA NA LTS-016 LRCH1, SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.0503071349774758 82 0.0286297003309824 0.603608382588154 6621 0.205854322662388 4 4 0 -7.83673519009191 LTS-016 NA NA NA NA LTS-016 chr13 52709939 52726876 16938 * NEK3 NA 0 NA 0.586324590033042 45 0.142077415232654 4 NA NA -5.7712234615242 LTS-016 chr13 52726877 52727984 1108 * NEK3 NA 0 NA 1.308 1 NA NA NA NA NA LTS-016 chr13 52727985 52730761 2777 * NEK3 0.024 1 NA 1.26483961915552 17 0.361469061404903 8 8 0 -5.76441140782792 LTS-016 chr13 52730762 77764518 25033757 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, LINC00381, DIAPH3-AS1, DIAPH3-AS2, MYCBP2-AS1, LINC00348, MRPS31P5, PIBF1, OLFM4, SUGT1, LECT1, KLF12, KCTD12, CLN5, HNRNPA1L2, DACH1, COMMD6, TPTE2P3, DIS3, MYCBP2, FBXL3, CKAP2, PCDH17, OR7E156P, LINC00550, LINC00347, LMO7, MZT1, NEK3, PCDH8, PCDH9, VPS36, THSD1, KLHL1, ATXN8OS, CTAGE11P, PCDH20, KLF5, BTF3P11, PRR20B, PRR20D, PRR20E, NA NA NA NA NA NA NA NA NA LTS-016 LMO7DN, ACOD1, UCHL3, BORA, TDRD3, DIAPH3, TBC1D4) 0.027721131252848 32 0.0173166664079398 1.17399744079101 3535 0.863703960298707 7 7 0 -6.81697325311693 LTS-016 NA NA NA NA LTS-016 chr13 77764519 77765767 1249 * MYCBP2 NA 0 NA 2.05 1 NA NA NA NA NA LTS-016 chr13 77765768 77842086 76319 * MYCBP2 NA 0 NA 1.99025145055492 91 0.350647629673095 13 NA NA -5.76441160443217 LTS-016 chr13 77842087 77844060 1974 * MYCBP2 NA 0 NA 1.087 1 NA NA NA NA NA LTS-016 chr13 77844061 103719231 25875171 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, SOX21, SLITRK1, METTL21EP, SLAIN1, RNF113B, LINC00410, GPR180, DCT, CLYBL, GPR183, EDNRB, METTL21C, NA NA NA NA NA NA NA NA NA LTS-016 ERCC5, FGF14, GPC5, DZIP1, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, HS6ST3, OXGR1, FGF14-IT1, FGF14-AS2, GPR18, UBAC2, IPO5, MIR19B1, MIR17HG, PCCA, POU4F1, NDFIP2, BIVM, UGGT2, DNAJC3, RAP2A, RBM26, MIR4500HG, CCDC168, SLC10A2, SLC15A1, MIR622, MIR623, TPP2, ZIC2, KDELC1, RNF219, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, TEX30, ITGBL1, TM9SF2) 0.0294215948244653 84 0.0410165349443499 1.15120144344201 5824 0.422522451218082 7 7 0 -6.88255878465699 LTS-016 NA NA NA NA LTS-016 chr13 106118519 114839373 8720855 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, LINC00460, FAM155A, CARS2, GRTP1, CUL4A, NA NA NA NA NA NA NA NA NA LTS-016 ABHD13, IRS2, PROZ, ARHGEF7) 0.0294292171207087 89 0.0158073339930335 1.22912390222375 4326 0.409925514454869 8 8 0 -6.76743939023022 LTS-016 NA NA NA NA LTS-016 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.719 1 NA NA NA NA NA LTS-016 chr13 114897818 115047700 149883 * c(RASA3, UPF3A, CDC16) 0.0446766846806772 3 0.01113552872566 0.995264400763263 115 0.267825200289279 5 5 0 -6.86536191550927 LTS-016 chr13 115047701 115092817 45117 * c(CHAMP1, UPF3A) NA 0 NA 1.01163848427378 111 0.169789896181159 6 NA NA -5.76747105392694 LTS-016 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.074 1 NA 0.820472997112771 11 1.6753215376594 5 5 0 -5.76445450547696 LTS-016 chr14 20201973 22434220 2232248 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, NA NA NA NA NA NA NA NA NA LTS-016 ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.0478591863551194 82 0.0257692871027469 0.650407380173123 3666 0.474882034437211 4 4 0 -6.73716834717806 LTS-016 NA NA NA NA LTS-016 chr14 22434221 22991095 556875 * character(0) 0.0437889419115269 19 0.0196950434587514 0.791570291863366 676 0.315434607628392 5 5 0 -6.7495801364243 LTS-016 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.583 1 NA NA NA NA NA LTS-016 chr14 22992444 23793508 801065 * c(BCL2L2-PABPN1, MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, BCL2L2, C14orf93, ABHD4, CDH24, PABPN1, AJUBA, SLC7A7, PPP1R3E) 0.0724551273889215 24 0.0412213668739468 0.633315768856695 2046 0.162582037442097 4 4 0 -6.93791260063696 LTS-016 chr14 23793509 23887640 94132 * c(MIR208B, BCL2L2-PABPN1, EFS, CMTM5, MIR208A, MYH6, MYH7, SLC22A17, IL25, PABPN1) 0.0113040752432663 8 0.0311539953869713 0.756688975239947 498 0.556333733328334 10 10 0 -6.88643093029739 LTS-016 chr14 23887641 24436744 549104 * c(DHRS2, DHRS4, NGDN, DHRS4L2, MYH7, DHRS4-AS1, THTPA, JPH4, ZFHX2, AP1G2) 0.0672449928458806 14 0.0242636616100142 0.657910676032931 831 0.258284431757367 4 4 0 -7.03021781574828 LTS-016 chr14 24436745 24437916 1172 * c(DHRS4, DHRS4L2) NA 0 NA 0.053 1 NA NA NA NA NA LTS-016 chr14 24437917 24473833 35917 * c(DHRS4, DHRS4L2, DHRS4L1) 0.5 1 NA 0.0997801811534144 54 0.084739204058113 0 0 0 -6.26557580328332 LTS-016 chr14 24473834 24475045 1212 * c(DHRS4, DHRS4L2, DHRS4L1) NA 0 NA 0.612 1 NA NA NA NA NA LTS-016 chr14 24475046 35008625 10533580 * c(MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, MIR548AI, IRF9, TM9SF1, DHRS4, RIPK3, AP4S1, EGLN3, DTD2, DHRS1, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, SPTSSA, ADCY4, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, RNF31, G2E3, EAPP, PRKD1, LTB4R2, SDR39U1, PSME1, NA NA NA NA NA NA NA NA NA LTS-016 PSME2, NYNRIN, RABGGTA, NPAS3, CBLN3, MIR624, TGM1, DHRS4L1, IPO4, NUBPL, DCAF11, ARHGAP5-AS1, CARMIL3, CPNE6, AKAP6, REC8) 0.0512662852916333 84 0.0279429793961379 0.636725632130832 5680 0.220081944657894 4 4 0 -6.8814553617841 LTS-016 NA NA NA NA LTS-016 chr14 35008626 64693473 29684848 * c(SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, MIR4503, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, CFL2, FERMT2, WDHD1, BAZ1A, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, MIPOL1, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, TMEM30B, MDGA2, NA NA NA NA NA NA NA NA NA LTS-016 LINC01599, NID2, ATG14, FKBP3, DAAM1, SAMD4A, FAM179B, SYNE2, KLHDC2, RALGAPA1, SFTA3, FBXO33, NKX2-8, GCH1, TIMM9, ATP5S, KCNH5, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, FAM177A1, ERO1A, HIF1A, FOXA1, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MGAT2, MIA2, MNAT1, NFKBIA, SIX6, OTX2, PAX9, ATL1, NIN, DACT1, JKAMP, MBIP, DHRS7, C14orf166, SIX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, EAPP, ACTR10, PSMA3, PSMA6, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, FANCM, PYGL, SNX6, ARID4A, SAV1, RPL36AL, RPS29, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SOS2, SRP54, SSTR1, STYX, NKX2-1, CCDC175, VCPKMT, L2HGDH, DDHD1, SGPP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TMX1, SYT16, FSCB, BRMS1L, INSM2, GEMIN2, CDKL1, SLC25A21, NEMF, MAPK1IP1L, KIAA0391, KIAA0586, DLGAP5) 0.050771042780377 168 0.0587895096446156 0.606811888797043 14949 0.190675550504239 4 4 0 -8.95830982004473 LTS-016 NA NA NA NA LTS-016 chr14 64693474 64693679 206 * character(0) NA 0 NA 0.754 1 NA NA NA NA NA LTS-016 chr14 64693680 73989983 9296304 * c(MED6, LOC100289511, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, ADAM21P1, PPP1R36, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, DCAF4, PLEK2, GPX2, ADAM20P1, SNORD56B, HSPA2, RAB15, ARG2, HEATR4, PLEKHD1, MAX, MAP3K9, LINC00238, TEX21P, MTHFD1, RDH11, COX16, ATP6V1D, PIGH, ZFYVE1, EXD2, SYNJ2BP, NA NA NA NA NA NA NA NA NA LTS-016 SLC39A9, PSEN1, CCDC177, GALNT16, PLEKHH1, RBM25, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, SLC8A3, SLC10A1, SPTB, ZFP36L1, ZBTB25, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, CHURC1, AKAP5, RGS6, SUSD6) 0.0486603813873574 146 0.0330327245023647 0.631334858196305 7171 0.261006019905202 4 4 0 -6.87761847398895 LTS-016 NA NA NA NA LTS-016 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.032 1 NA NA NA NA NA LTS-016 chr14 74003792 74010484 6693 * c(HEATR4, ACOT1) NA 0 NA 0.119369965680101 39 0.169756008918985 1 NA NA -5.81117110773185 LTS-016 chr14 74010485 74020989 10505 * c(HEATR4, ACOT1) NA 0 NA 0.042 1 NA NA NA NA NA LTS-016 chr14 74020990 74533631 512642 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, HEATR4, ALDH6A1, COQ6, ZNF410, ACOT1, ACOT6, BBOF1, DNAL1, ELMSAN1, PNMA1, ENTPD5) 0.0610032835600903 47 0.0326263005206141 0.591679923362774 1164 0.949171451681793 3 3 0 -6.74596923796009 LTS-016 chr14 74533632 74534135 504 * c(ALDH6A1, BBOF1) NA 0 NA 0.703 1 NA NA NA NA NA LTS-016 chr14 74534136 91927773 17393638 * c(SNORA11B, MIR1260A, MIR4709, DIO2-AS1, LINC00911, BATF, NPC2, AHSA1, TMED10, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, TTC8, LRRC74A, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, VSX2, FOXN3-AS1, LINC00642, LTBP2, ALDH6A1, CCDC88C, FCF1, NA NA NA NA NA NA NA NA NA LTS-016 PGF, KCNK10, NRDE2, VRTN, FLVCR2, GPATCH2L, PPP4R3A, TDP1, SPATA7, YLPM1, KCNK13, PSMC1, ADCK1, TMEM63C, NGB, ABCD4, VIPAS39, SEL1L, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, ZC3H14, C14orf159, CALM1, BBOF1, GPR68, SLIRP, RPS6KL1, GPR65, STON2, CIPC, ALKBH1, EIF2B2, EFCAB11, LIN52, NEK9, RPS6KA5, NRXN3, SPTLC2, ACYP1, AREL1) 0.0520397957728864 148 0.0262243807690124 0.656910619480611 9436 0.209295296715962 4 4 0 -6.73942336379052 LTS-016 NA NA NA NA LTS-016 chr14 91927774 91927837 64 * PPP4R3A NA 0 NA 0.632 1 NA NA NA NA NA LTS-016 chr14 91927838 92629899 702062 * c(FBLN5, TC2N, ATXN3, NDUFB1, CPSF2, PPP4R3A, CATSPERB, TRIP11) 0.0719364954283898 25 0.0359094695031826 0.57974691478321 980 0.166364699789896 3 3 0 -6.99927972268279 LTS-016 chr14 92629900 104501474 11871575 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, CYP46A1, PAPOLA, CHGA, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, SLC24A4, SLC25A29, DEGS2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, EIF5, EML1, RCOR1, PPP1R13B, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, NA NA NA NA NA NA NA NA NA LTS-016 FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, KLC1, SERPINA13P, LINC01550, RTL1, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, ATG2B, UBR7, PPP2R5C, MEG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, RD3L, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.0452154669875056 194 0.0294317062907519 0.680146301808399 10682 0.262310275094691 4 4 0 -6.85154584348927 LTS-016 NA NA NA NA LTS-016 chr14 104501475 106369516 1868042 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00638, ELK2AP, AKT1, PACS2, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, TMEM179, C14orf180, MIR203A, CDCA4, INF2, TEX22, TMEM121, BTBD6, MTA1, FAM30A) 0.040147243925605 57 0.0237755402838605 0.756845674491342 3147 0.578675156039134 5 5 0 -6.74708736740298 LTS-016 chr14 106369517 106370412 896 * FAM30A NA 0 NA 0.59 1 NA NA NA NA NA LTS-016 chr14 106370413 106471388 100976 * c(ADAM6, FAM30A) 0.0484235155089359 5 0.00904433524367601 0.520030519078714 88 0.298943933613138 4 4 0 -6.78330340815458 LTS-016 chr14 106471389 106471528 140 * character(0) 0.131 1 NA 0.702082257460598 5 0.0457416659075727 4 4 0 -5.76457225693815 LTS-016 chr14 106471529 107178965 707437 * c(LINC00226, LINC00221) 0.135724406040056 27 0.0892279005335116 0.682202867226284 288 0.608807469904753 7 6 1 -7.04792617790487 LTS-016 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.673764871020389 54 0.579548116696739 4 NA NA -5.76450525220901 LTS-016 chr15 20169987 20433934 263948 * character(0) 0.047 1 NA 1.23411506959585 13 2.07762378445752 8 8 0 -5.76441795242332 LTS-016 chr15 20433935 21936489 1502555 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, GOLGA6L6, GOLGA8CP) 0.311801405223032 10 0.116271903551785 0.947110713803153 124 1.18355425663669 7 5 2 -6.75639314188653 LTS-016 chr15 21936490 22156760 220271 * c(POTEB, NF1P2, LOC646214, CXADRP2) NA 0 NA 2.556 1 NA NA NA NA NA LTS-016 chr15 22156761 22489900 333140 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.305098379557862 19 0.117269968935082 1.37387372017641 147 1.22523523228367 10 7 3 -6.73529722343238 LTS-016 chr15 22489901 22840279 350379 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, REREP3) 0.469 1 NA 1.01849796801877 29 0.372634949271696 6 6 0 -5.77057933046316 LTS-016 chr15 22840280 23259409 419130 * c(TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, NIPA2) 0.457830442884675 16 0.052459508194416 1.1296974031844 605 0.460190028925385 8 4 4 -7.12934836166482 LTS-016 chr15 23259410 23299024 39615 * c(GOLGA8IP, HERC2P2) NA 0 NA 1.878 1 NA NA NA NA NA LTS-016 chr15 23299025 23685517 386493 * c(HERC2P7, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.463 1 NA 1.59546656294395 31 0.804132673748087 10 10 0 -5.76472284901458 LTS-016 chr15 23685518 23686019 502 * character(0) 0.203 1 NA 2.49928574500761 3 1.21381725697624 16 16 0 -5.76441025475049 LTS-016 chr15 23686020 23687743 1724 * character(0) 0.233850322214071 2 0.0254558441227157 2.26904974930449 19 0.782602727595404 9 7 2 -6.7357181406274 LTS-016 chr15 23687744 23688912 1169 * character(0) NA 0 NA 1.096 1 NA NA NA NA NA LTS-016 chr15 23688913 25425798 1736886 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD116-28, SNORD116-29, MIR4508, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, MKRN3, NA NA NA NA NA NA NA NA NA LTS-016 PWRN1, PWRN2, PWAR5, SNURF) 0.342182552843739 8 0.209654818349455 1.17834092059483 608 0.65815832732758 8 5 3 -6.75614296210322 LTS-016 NA NA NA NA LTS-016 chr15 25425799 25434755 8957 * c(SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD109B) 0.498 1 NA 1.0828678072206 17 0.561198481193702 7 7 0 -5.76441643204808 LTS-016 chr15 25434756 27271789 1837034 * c(SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, MIR4715, GABRA5, GABRB3, GABRG3, SNORD109B, PWAR4, LINC00929, ATP10A, NA NA NA NA NA NA NA NA NA LTS-016 UBE3A) 0.460644701233048 19 0.0412543813019682 1.14391239496388 695 0.389104099341547 8 4 4 -7.46207806189799 LTS-016 NA NA NA NA LTS-016 chr15 27271790 27890414 618625 * GABRG3 0 1 NA 1.19037605979646 93 0.858025148356804 8 8 0 -5.76570491578505 LTS-016 chr15 27890415 28520243 629829 * c(OCA2, HERC2) 0.236911606265022 8 0.216573313222105 1.19803523495425 475 0.419481704916309 8 6 2 -6.74604739420432 LTS-016 chr15 28520244 28525198 4955 * HERC2 NA 0 NA 0.91 1 NA NA NA NA NA LTS-016 chr15 28525199 29008647 483449 * c(HERC2P9, WHAMMP2, HERC2) NA 0 NA 0.468056990702103 39 0.401870350582701 3 NA NA -5.77779973785071 LTS-016 chr15 29008648 29008658 11 * WHAMMP2 NA 0 NA 0.918 1 NA NA NA NA NA LTS-016 chr15 29008659 29394009 385351 * c(LOC100289656, APBA2, WHAMMP2, PDCD6IPP2, GOLGA6L7P) 0.476 1 NA 1.10404230880075 109 0.305853167174839 7 7 0 -5.76441019305958 LTS-016 chr15 29394010 29410073 16064 * APBA2 0.429 1 NA 1.26933118790197 45 0.296457812080293 8 8 0 -5.76443023473422 LTS-016 chr15 29410074 29544656 134583 * c(FAM189A1, APBA2) 0.460602256256604 13 0.0229941464123104 1.29028826387436 135 0.898706641590892 8 4 4 -8.50316964795167 LTS-016 chr15 29544657 30054476 509820 * c(FAM189A1, NSMCE3, TJP1) 0 1 NA 1.10024255716423 265 0.251289338847039 7 7 0 -5.76446269177472 LTS-016 chr15 30054477 30503046 448570 * c(DKFZP434L187, GOLGA8T, TJP1) NA 0 NA 1.04406731545899 83 0.219812299379643 7 NA NA -5.7816426240443 LTS-016 chr15 30503047 30650508 147462 * DKFZP434L187 NA 0 NA 0.263 1 NA NA NA NA NA LTS-016 chr15 30650509 30665357 14849 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.367889500626639 48 0.169739536334454 2 NA NA -5.7644927355251 LTS-016 chr15 30665358 33061582 2396225 * c(WHAMMP1, LOC100288637, LOC100996255, CHRNA7, OTUD7A, FAN1, DKFZP434L187, GREM1, LOC283710, FMN1, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, SCG5, GOLGA8O, CHRFAM7A, ARHGAP11B, ARHGAP11A) 0.262629696535674 15 0.201351741511028 1.07708195703026 1183 0.491770834249254 7 5 2 -6.75519270745916 LTS-016 chr15 33061583 33061759 177 * FMN1 0.428 1 NA 1.07157269303499 5 0.35691945870182 7 7 0 -5.76441086571228 LTS-016 chr15 33061760 42104009 9042250 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, MAPKBP1, GOLGA8A, RTF1, MGA, LPCAT4, NUTM1, RPAP1, GCHFR, RPUSD2, FAM98B, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, PLCB2, DLL4, INO80, PPP1R14D, NA NA NA NA NA NA NA NA NA LTS-016 ZNF770, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, MIR626, ACTC1, BUB1B, THBS1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, C15orf41, ZFYVE19, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR, SLC12A6) 0.418342127740559 116 0.131195779405182 1.08865848244266 7857 0.302146073951024 7 4 3 -6.74944180818406 LTS-016 NA NA NA NA LTS-016 chr15 42104010 42104178 169 * MAPKBP1 NA 0 NA 1.314 1 NA NA NA NA NA LTS-016 chr15 42104179 42480131 375953 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, JMJD7-PLA2G4B) 0.406726694843209 18 0.152855361168356 1.21440359521009 1323 0.365655461619356 8 4 4 -6.73616992921165 LTS-016 chr15 42480132 42481240 1109 * VPS39 NA 0 NA 1.107 1 NA NA NA NA NA LTS-016 chr15 42481241 43441377 960137 * c(TTBK2, CDAN1, UBR1, VPS39, LRRC57, GANC, TMEM87A, HAUS2, STARD9, ZNF106, MIR627, TMEM62, CAPN3, SNAP23) 0.402923105936409 7 0.173124645435429 1.08632137401335 1811 0.234659957334319 7 4 3 -6.73595455774802 LTS-016 chr15 43441378 43508648 67271 * c(EPB42, CCNDBP1, TMEM62) 0 1 NA 1.07392537502675 203 0.558453054583405 7 7 0 -5.76450803518298 LTS-016 chr15 43508649 44090803 582155 * c(MIR1282, SERF2-C15ORF63, SERF2, CKMT1B, TGM7, CATSPER2, ZSCAN29, STRC, ADAL, EPB42, TUBGCP4, PDIA3, MAP1A, CATSPER2P1, CKMT1A, SERINC4, TP53BP1, ELL3, TGM5, PPIP5K1, LCMT2) 0.393541917561734 2 0.122329473145273 1.07693661046185 1669 0.271643997355923 7 4 3 -6.74251381029016 LTS-016 chr15 44090804 44091011 208 * c(SERF2-C15ORF63, SERINC4, ELL3) NA 0 NA 1.823 1 NA NA NA NA NA LTS-016 chr15 44091012 44216546 125535 * c(SERF2-C15ORF63, HYPK, MFAP1, SERINC4, PIN4P1, WDR76, ELL3, FRMD5) 0.0781806223122427 3 0.174937131564457 1.61338875758785 364 0.532821235053466 12 11 1 -6.74579164323322 LTS-016 chr15 44216547 44486889 270343 * FRMD5 NA 0 NA 0.827 1 NA NA NA NA NA LTS-016 chr15 44486890 45060093 573204 * c(CASC4, TRIM69, PATL2, CTDSPL2, B2M, EIF3J-AS1, SPG11, FRMD5, EIF3J) 0.35026396522104 6 0.235242569843697 1.03268768103201 801 0.245572008847381 6 4 2 -6.76792105696354 LTS-016 chr15 45060094 45117968 57875 * character(0) NA 0 NA 2.241 1 NA NA NA NA NA LTS-016 chr15 45117969 45139695 21727 * character(0) NA 0 NA 2.29001836870083 41 2.79423741811259 15 NA NA -5.7644101349507 LTS-016 chr15 45139696 45142487 2792 * character(0) NA 0 NA 1.055 1 NA NA NA NA NA LTS-016 chr15 45142488 45414540 272053 * c(TERB2, DUOXA2, DUOX2, SORD, DUOXA1) 0.109639817409479 3 0.267313174634797 1.11519438563345 420 0.850562591870862 8 7 1 -6.7464392434019 LTS-016 chr15 45414541 45433646 19106 * c(DUOX1, DUOXA1) 0.45 1 NA 1.18532181476859 63 0.305944754039551 8 8 0 -5.76477972367331 LTS-016 chr15 45433647 45695290 261644 * c(NA, GATM, DUOX1, SPATA5L1, SHF, SLC28A2) 0.467341797311903 12 0.0221131730930327 1.08856552277253 408 0.245678841133463 6 3 3 -9.06229952379473 LTS-016 chr15 45695291 45697703 2413 * SPATA5L1 0 1 NA 1.12390902808077 17 0.569036899196404 7 7 0 -5.76441158084452 LTS-016 chr15 45697704 48591446 2893743 * c(MIR147B, BLOC1S6, HMGN2P46, SLC24A5, CTXN2, MYEF2, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48) 0.288038420440895 12 0.220530970820221 1.09497992689842 1167 0.403612707914599 7 5 2 -6.73497906431033 LTS-016 chr15 48591447 48595366 3920 * SLC12A1 0.48 1 NA 1.10216650856262 13 0.291689574191996 7 7 0 -5.76441020077015 LTS-016 chr15 48595367 48789565 194199 * c(DUT, FBN1, SLC12A1) 0.438736669552724 11 0.0381139440004931 1.08213241460563 421 0.262767330763363 6 3 3 -6.9923972537253 LTS-016 chr15 48789566 68486458 19696893 * c(GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, NDUFAF4P1, MIR2116, MIR4311, IQCH-AS1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4511, MIR4712, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, SLC27A2, LACTB, DIS3L, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, C15orf61, CYP19A1, DYX1C1, FAM227B, MGC15885, LCTL, FBN1, FGF7, CEP152, ZNF609, DMXL2, AP4E1, DAPK2, NA NA NA NA NA NA NA NA NA LTS-016 EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, USP50, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, SHC4, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ZWILCH, FLJ10038, MNS1, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, DTWD1, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, ATP8B4, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, SPPL2A, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, USP8, CCNB2, CALML4, SLC24A1, CCPG1, GCNT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 LDHAL6B, COPS2, TRIP4, PIGB, IGDCC3, SECISBP2L, KIAA0101, USP3) 0.430830313922081 269 0.104900532437154 1.02398224993257 16509 0.299688459671035 6 3 3 -7.3200572250643 LTS-016 NA NA NA NA LTS-016 chr15 68486459 68489823 3365 * CALML4 NA 0 NA 1.353 1 NA NA NA NA NA LTS-016 chr15 68489824 72104306 3614483 * c(NR2E3, MIR548H4, MIR4312, FEM1B, CORO2B, DRAIC, CT62, ITGA11, SPESP1, GLCE, EWSAT1, LINC00593, LRRC49, PAQR5, CLN6, UACA, LARP6, THAP10, RPLP1, MIR629, TLE3, NOX5, THSD4, ANP32A-IT1, ANP32A, CALML4, KIF23) 0.442707664055914 31 0.0891536790863039 1.08944699539598 2253 0.325651626815558 7 4 3 -6.83459085625463 LTS-016 chr15 72104307 72118370 14064 * c(NR2E3, MYO9A) 0 1 NA 1.14260831597919 108 0.233485835603541 7 7 0 -5.76459423667585 LTS-016 chr15 72118371 74177199 2058829 * c(HCN4, ADPGK-AS1, SENP8, HIGD2B, TBC1D21, GRAMD2, ARIH1, NPTN, REC114, HEXA, TMEM202, C15orf59, MYO9A, NEO1, PKM, GOLGA6B, PARP6, BBS4, CELF6, MIR630, HEXA-AS1, CD276, ADPGK) 0.170635108032413 9 0.226579701454281 1.10416437450675 1752 0.409647987432759 7 6 1 -6.73350535975423 LTS-016 chr15 74177200 74219546 42347 * c(LOXL1-AS1, TBC1D21, LOXL1) 0.484 1 NA 1.14984564979753 51 0.354424112843223 7 7 0 -5.76474686369873 LTS-016 chr15 74219547 78857896 4638350 * c(DNM1P35, LOXL1-AS1, MIR4313, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, ARID3B, CHRNA5, CLK3, TMEM266, HYKK, CRABP1, CSK, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, ODF3L1, SCAMP5, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, LOC283731, IDH3A, GOLGA6A, IREB2, ISLR, LOXL1, MAN2C1, MPI, UBL7-AS1, SCAPER, PML, RPP25, COMMD4, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, ISLR2, PTPN9, NA NA NA NA NA NA NA NA NA LTS-016 CPLX3, RCN2, PPCDC, STRA6, LOC645752, SH2D7, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, LINC00597, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A, STOML1) 0.437379575183197 87 0.085684401302515 1.07677527313718 5533 0.974147288225658 7 4 3 -6.81238576991716 LTS-016 NA NA NA NA LTS-016 chr15 78857897 78885928 28032 * c(CHRNA3, CHRNA5) 0 1 NA 1.04418389892112 51 0.637147697347557 7 7 0 -5.76453815436443 LTS-016 chr15 78885929 79761039 875111 * c(MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CTSH, KIAA1024, TMED3, ANKRD34C, MIR184, RASGRF1, LOC646938, ANKRD34C-AS1) 0.350594042866068 34 0.183266608340473 1.12689582608107 881 0.646440949501056 8 5 3 -6.75716751928393 LTS-016 chr15 79761040 79762525 1486 * KIAA1024 0.46 1 NA 1.07072580774719 31 0.205374360515107 7 7 0 -5.76442976988366 LTS-016 chr15 79762526 101113862 21351337 * c(NA, UBE2Q2P2, LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, MTHFS, ABHD2, CHD2, AKAP13, C15orf40, LRRC28, AGBL1, WHAMM, FSD2, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, LINC00052, CFAP161, ADAMTS17, ACAN, DNM1P46, CERS3, FAH, FES, MESDC2, NA NA NA NA NA NA NA NA NA LTS-016 KIAA1024, SYNM, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, FAM169B, ANPEP, LOC338963, IDH2, TMC3, ZNF774, IGF1R, ARPIN, IL16, ISG20, GOLGA6L5P, KIF7, ZNF710, HDDC3, GOLGA2P7, UBE2Q2P1, SPATA41, GDPGP1, ADAMTS7P1, ST20, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PRKXP1, NMB, NTRK3, FURIN, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, LINS1, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, ADAMTSL3, CEMIP, ALPK3, ABHD17C, MESDC1, BCL2A1, RLBP1, BLM, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, BNC1, GOLGA6L10, AEN, CRTC3, EFTUD1P1, TTC23, MRPS11, SCARNA15, MIR549A, NR2F2, HSP90B2P, AGBL1-AS1, ASB9P1, EFL1, STARD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 AP3B2, ST8SIA2, FAM103A1, MEX3B, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ARRDC4, LINC00923, HOMER2, ZNF592, SV2B, ARNT2) 0.420597886604747 283 0.127855746244472 1.10021789370494 12531 0.427800268514888 7 4 3 -6.74121436488527 LTS-016 NA NA NA NA LTS-016 chr15 101113863 101191899 78037 * c(ASB7, LINS1) NA 0 NA 1.03684896471752 131 0.18354731230496 7 NA NA -5.76985811254074 LTS-016 chr15 101191900 101417912 226013 * ASB7 NA 0 NA 0.516 1 NA NA NA NA NA LTS-016 chr15 101417913 101421673 3761 * ALDH1A3 0.211 1 NA 0.528333705906822 45 0.173732835065217 3 3 0 -5.76450013244401 LTS-016 chr15 101421674 102029620 607947 * c(LOC100507472, ALDH1A3, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1) 0.0562195749836834 18 0.0285070797306782 0.568276798223442 730 0.19203121830174 3 3 0 -6.89113700827592 LTS-016 chr15 102029621 102191869 162249 * c(PCSK6, TM2D3) 0.071 1 NA 0.492266987753715 71 0.101300850807115 3 3 0 -5.77668403472071 LTS-016 chr15 102191870 102516492 324623 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, TM2D3) 0.327649557475427 9 0.179541777867994 0.578560717695489 268 0.18511518121838 3 2 1 -6.83186626458193 LTS-016 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.606 1 NA NA NA NA NA LTS-016 chr16 81704 81779 76 * character(0) 0.281 1 NA 1.438 1 NA NA NA NA NA LTS-016 chr16 81780 5110271 5028492 * c(MIR940, LOC100128770, SRRM2-AS1, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MTRNR2L4, MIR3677, MIR3180-5, ERVK13-1, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4717, MIR4516, MIR5587, NUBP2, ZNF263, TRAP1, MSLN, STUB1, MRPL28, TBL3, RNPS1, PRSS21, RPUSD1, FLYWCH2, VASN, ADCY9, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, RNF151, PRR35, FBXL16, SSTR5-AS1, ZNF597, NA NA NA NA NA NA NA NA NA LTS-016 BICDL2, C16orf89, C16orf71, ECI1, DNASE1, DNASE1L2, E4F1, WDR90, EME2, NLRC3, ABCA3, CLUAP1, MAPK8IP3, MGRN1, TPSD1, SRRM2, MEIOB, TPSG1, RAB26, PRSS33, ZNF500, DECR2, OR1F2P, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, LINC00514, LINC00921, NHLRC4, C16orf91, UBN1, CDIP1, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, HMOX2, JMJD8, C16orf96, IGFALS, PRSS41, PRR25, C1QTNF8, PTX4, ARHGDIG, MEFV, MPG, SMIM22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 NDUFB10, NME3, NME4, NTHL1, NTN3, OR1F1, OR2C1, AMDHD2, PAM16, NAGPA, TNFRSF12A, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, KCTD5, ZSCAN32, PPL, HCFC1R1, LUC7L, ALG1, SNORA10, NMRAL1, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, SRL, CHTF18, PRSS22, MLST8, RHBDF1, MMP25, NARFL, LINC00235, TPSB2, FLJ42627, CCDC154, C16orf90, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MRPS34, CAPN15, SSTR5, SNORA78, TCEB2, TFAP4, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, CEMP1, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, METRN, THOC6, KREMEN2, CORO7, SNRNP25, ROGDI, TMEM204, NAA60, C16orf59, NPRL3, ZNF205-AS1, FAHD1, AXIN1, PRSS27, FAM234A, WDR24, TRAF7, FLYWCH1, HAGHL, NUDT16L1, METTL26, MCRIP2, SLX4, GNPTG, GLYR1, GLIS2, ZSCAN10, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, CLDN6, CLDN9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ZNF598, HN1L, SPSB3, PKMYT1, PIGQ, DNAJA3, TIGD7, SYNGR3, IL32, SLC9A3R2, SEC14L5, RAB11FIP3, IFT140, TELO2) 0.42836278010975 243 0.113650656040968 0.673239015232722 13110 0.327731144371382 4 2 2 -6.75529658272982 LTS-016 NA NA NA NA LTS-016 chr16 5110272 5134559 24288 * c(C16orf89, EEF2KMT, ALG1) 0 1 NA 0.608115137125168 53 0.206938475533245 4 4 0 -5.7665823010456 LTS-016 chr16 5134560 8858800 3724241 * c(ABAT, EEF2KMT, TMEM114, RBFOX1, ALG1, METTL22) 0.256880950320543 8 0.231692491708915 0.702596408909919 342 0.407121552654231 4 3 1 -6.79220131056792 LTS-016 chr16 8858801 8859940 1140 * ABAT NA 0 NA 0.553 1 NA NA NA NA NA LTS-016 chr16 8859941 8875208 15268 * ABAT 0.26078605040975 3 0.270825281931605 0.669668578584613 35 1.16590907439127 4 3 1 -6.73463910854943 LTS-016 chr16 8875209 8875799 591 * ABAT 0.45 1 NA 0.73557836924195 13 0.197327756764586 5 5 0 -5.76448839748186 LTS-016 chr16 8875800 12897578 4021779 * c(MIR548X, MIR4718, RMI2, TEKT5, ABAT, EMP2, CLEC16A, CARHSP1, TMEM186, RSL1D1, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, TXNDC11, PMM2, CPPED1, PRM1, PRM2, PRM3, TNFRSF17, TNP2, TVP23A, USP7, ATF7IP2, SNN, SOCS1, SNX29, LITAF) 0.435487835203713 70 0.0514689417695148 0.63685112097557 2570 0.188445445986991 4 2 2 -6.90755786779796 LTS-016 chr16 12897579 12995928 98350 * c(CPPED1, SHISA9) 0 1 NA 0.711669309394298 11 0.819862593809031 4 4 0 -5.76493517640932 LTS-016 chr16 12995929 15116625 2120697 * c(MIR365A, ERCC4, PDXDC1, NOMO1, PARN, BFAR, MIR193B, MKL2, NPIPA3, SHISA9, ABCC6P2, PLA2G10, NPIPA1) 0.297148290248323 19 0.168584630906194 0.671771183998166 642 0.325761779217582 4 3 1 -6.74817221666505 LTS-016 chr16 15116626 15129970 13345 * PDXDC1 0.485 1 NA 0.673869784852366 41 0.136289742469633 4 4 0 -5.76463345162978 LTS-016 chr16 15129971 25263278 10133308 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, ITPRIPL2, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, MPV17L, PDZD9, ANKS4B, TNRC6A, GP2, NOMO2, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, NOMO3, NA NA NA NA NA NA NA NA NA LTS-016 ABCC1, MYH11, NDUFAB1, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST2) 0.406300651116431 155 0.127972975781502 0.644603572343804 8243 0.247463594249203 4 2 2 -6.78162476001878 LTS-016 NA NA NA NA LTS-016 chr16 25263279 25704054 440776 * c(ZKSCAN2, HS3ST4) NA 0 NA 0.617423213974856 31 0.167667566640736 4 NA NA -5.80355823516155 LTS-016 chr16 25704055 25704108 54 * HS3ST4 NA 0 NA 1.465 1 NA NA NA NA NA LTS-016 chr16 25704109 25944700 240592 * HS3ST4 0.297 1 NA 0.971970142581659 11 1.00907248140422 6 6 0 -5.76445162796781 LTS-016 chr16 25944701 28608392 2663692 * c(SGF29, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, IL21R-AS1, GTF3C1, IL4R, SBK1, FLJ21408, IL21R, APOBR, SULT1A2, KDM8, HS3ST4) 0.254081259147547 11 0.167233369875752 0.928404279960234 1381 0.286310430358163 6 5 1 -6.83668058711077 LTS-016 chr16 28608393 28734890 126498 * SULT1A1 NA 0 NA 0.602193844919166 89 0.241880018417189 4 NA NA -5.77482891513844 LTS-016 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.498 1 NA NA NA NA NA LTS-016 chr16 28834304 29367259 532956 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.378402319033421 8 0.0516028792109233 0.963376983626119 840 0.20694345169679 5 3 2 -7.00978914666484 LTS-016 chr16 29367260 29624801 257542 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3, SLC7A5P1) NA 0 NA 0.428795725778041 40 0.356338573334622 2 NA NA -5.79918847716694 LTS-016 chr16 29624802 31512077 1887276 * c(MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, CDIPT-AS1, SULT1A4, TRIM72, NA NA NA NA NA NA NA NA NA LTS-016 ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.311025333123877 61 0.0997446110408677 0.94698973981818 5473 0.276129410775465 6 4 2 -6.79335280084138 LTS-016 NA NA NA NA LTS-016 chr16 31512078 31518980 6903 * C16orf58 NA 0 NA 0.622 1 NA NA NA NA NA LTS-016 chr16 31518981 32487868 968888 * c(CLUHP3, ZNF267, ZNF720, LOC390705, YBX3P1, NA, AHSP, C16orf58, TP53TG3D) 0.353296707145284 10 0.0466057936312643 0.822246686903261 307 0.296073531714504 6 4 2 -6.91104227087888 LTS-016 chr16 32487869 32858995 371127 * LOC390705 NA 0 NA 0.525 1 NA NA NA NA NA LTS-016 chr16 32858996 32896703 37708 * c(SLC6A10P, LOC390705) 0 1 NA 0.618081606937992 54 0.643301669852225 4 4 0 -5.76463163909939 LTS-016 chr16 32896704 32936849 40146 * LOC390705 NA 0 NA 1.499 1 NA NA NA NA NA LTS-016 chr16 32936850 33961248 1024399 * c(LOC390705, LINC00273) 0.302239477845637 10 0.0861201357278179 1.13217232181531 140 0.910686681160747 7 5 2 -6.73488123277142 LTS-016 chr16 33961249 33961254 6 * LINC00273 0.141 1 NA 3.381 1 NA NA NA NA NA LTS-016 chr16 33961255 33961352 98 * LINC00273 0.288517041620949 3 0.0108166538263919 2.48838254829434 5 2.34298911649201 14 10 4 -6.79788122806106 LTS-016 chr16 33961353 33961370 18 * LINC00273 0.384 1 NA 3.363 1 NA NA NA NA NA LTS-016 chr16 33961371 33962354 984 * LINC00273 0.357728255461735 46 0.0802149407216377 1.98428553980616 74 1.06043522400452 14 9 5 -6.73303331487724 LTS-016 chr16 33962355 33962365 11 * LINC00273 0.4 1 NA 1.158 1 NA NA NA NA NA LTS-016 chr16 33962366 33965644 3279 * LINC00273 0.450044814889588 2 0.0120208152801714 0.696222268677301 20 0.325953160987733 4 2 2 -9.76661843434829 LTS-016 chr16 33965645 34682380 716736 * c(LINC01566, UBE2MP1) NA 0 NA 0.939013161105261 115 0.247646709863423 6 NA NA -5.76652934157836 LTS-016 chr16 46508169 46658857 150689 * c(ANKRD26P1, SHCBP1) 0.275 1 NA 0.913717041716948 213 0.273156911725191 6 6 0 -5.76682989162753 LTS-016 chr16 46658858 52118306 5459449 * c(LINC00919, LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, SIAH1, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.156964140789601 25 0.168370593236072 0.898213080202099 2848 0.414677236079457 6 5 1 -6.8275615236384 LTS-016 chr16 52118307 53191470 1073164 * c(LINC00919, TOX3, CASC16, CHD9) 0.307 1 NA 0.931913123824024 121 0.198855338355012 6 6 0 -5.7745517698629 LTS-016 chr16 53191471 53945472 754002 * c(RPGRIP1L, RBL2, LOC643802, AKTIP, FTO, CHD9) 0.338253149864229 6 0.0356917357381229 0.847064152943078 637 0.186668132726291 6 4 2 -6.92415256280959 LTS-016 chr16 53945473 53967861 22389 * FTO NA 0 NA 1.595 1 NA NA NA NA NA LTS-016 chr16 53967862 58589112 4621251 * c(MIR3935, IRX5, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ARL2BP, DKFZP434H168, AMFR, GNAO1, LOC283856, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, NA NA NA NA NA NA NA NA NA LTS-016 CRNDE, MT1IP, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, NLRC5, DRC7, CAPNS2, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.336184426360755 122 0.0977921297281641 0.937745119065672 4996 0.309976908458182 6 4 2 -6.74564344739312 LTS-016 NA NA NA NA LTS-016 chr16 58589113 58699905 110793 * c(CNOT1, SNORA50A) 0 1 NA 0.948344785349727 117 0.536696287027667 6 6 0 -5.76442311272239 LTS-016 chr16 58699906 64295215 5595310 * c(CDH8, GOT2, SLC38A7, APOOP5) 0.253897884900334 3 0.231138486626524 0.922840434985411 291 0.417644109589913 6 5 1 -6.80210041597648 LTS-016 chr16 64977668 67116311 2138644 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CDH16, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, CES3, TERB1, CES4A, LINC00922, CKLF, FAM96B, PDP2, RRAD, TK2, CA7, CBFB, CES2, NAE1) 0.0944121600439885 12 0.0317073502615097 0.356903588550994 1521 0.0966241882303177 2 2 0 -6.76981080960239 LTS-016 chr16 67116312 67132560 16249 * CBFB NA 0 NA 0.087 1 NA NA NA NA NA LTS-016 chr16 67132561 67143915 11355 * c(C16orf70, CBFB) NA 0 NA 0.0744266999928251 50 0.042299230465331 0 NA NA -5.83118879193284 LTS-016 chr16 67143916 70868015 3724100 * c(CDH3, SNORD111B, VAC14-AS1, MIR1538, MIR1972-1, SMG1P7, LOC100506083, NUTF2, CTCF, NFAT5, WWP2, DDX19B, EXOSC6, NRN1L, ZFP90, CARMIL2, KCTD19, IL34, TMED6, CTRL, AARS, NQO1, AGRP, E2F4, FUK, SF3B3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, NIP7, TPPP3, PRMT7, NA NA NA NA NA NA NA NA NA LTS-016 HYDIN, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, TRADD, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.14566980869068 32 0.13628917016119 0.363321539694653 6893 0.105234904763807 2 2 0 -6.83344593521724 LTS-016 NA NA NA NA LTS-016 chr16 70868016 70874094 6079 * HYDIN NA 0 NA 0.385118823432317 11 0.0392618250860923 2 NA NA -5.7735236463785 LTS-016 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.763 1 NA NA NA NA NA LTS-016 chr16 70883627 70884524 898 * HYDIN 0.253 1 NA 0.770422197913442 11 0.12503075985169 5 5 0 -5.76448457902102 LTS-016 chr16 70884525 71167220 282696 * HYDIN 0.259303082921361 70 0.0646158195861257 0.778803276833694 526 0.448445341685528 4 3 1 -6.79093787756969 LTS-016 chr16 71167221 71196616 29396 * HYDIN NA 0 NA 0.661754283633946 15 0.0748562431788902 4 NA NA -5.76447730364038 LTS-016 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.44 1 NA NA NA NA NA LTS-016 chr16 71209484 71423351 213868 * c(HYDIN, CMTR2, CALB2) 0 1 NA 0.380483109623154 151 0.264153756817158 2 2 0 -5.76900476488197 LTS-016 chr16 71423352 84163126 12739775 * c(LOC100129617, SYCE1L, SNORA70D, MIR3182, LINC01568, MIR4720, MIR4719, CDH13, CLEC3A, CHST4, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, SLC38A8, CTRB1, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ATMIN, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, OSGIN1, HP, HPR, HSBP1, HSD17B2, ATXN1L, PKD1L3, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, PLCG2, NA NA NA NA NA NA NA NA NA LTS-016 BCO1, TERF2IP, NECAB2, TXNL4B, RFWD3, ZNF821, CENPN, CMC2, PSMD7, VAT1L, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, ZNRF1, CNTNAP4, MBTPS1, MARVELD3, SDR42E1, BCAR1, DHX38, IST1) 0.0999670423306177 160 0.0580609359874249 0.362957778144461 6284 0.146827405415459 2 2 0 -6.75248662498636 LTS-016 NA NA NA NA LTS-016 chr16 84163127 84164976 1850 * HSDL1 NA 0 NA 0.340261349065496 23 0.0719822386964106 2 NA NA -5.76522575844143 LTS-016 chr16 84164977 84178875 13899 * c(DNAAF1, HSDL1) NA 0 NA 0.68 1 NA NA NA NA NA LTS-016 chr16 84178876 84209590 30715 * DNAAF1 0.036 1 NA 0.723968021950496 55 0.263917230163368 4 4 0 -5.76677056934011 LTS-016 chr16 84209591 90095582 5885992 * c(VPS9D1-AS1, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, NA NA NA NA NA NA NA NA NA LTS-016 FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.0398064128797336 160 0.0405978702349035 0.818774893931522 6260 0.294585624720792 5 5 0 -6.74167463723513 LTS-016 NA NA NA NA LTS-016 chr16 90095583 90161242 65660 * c(URAHP, PRDM7, GAS8, GAS8-AS1) NA 0 NA 0.784693463240056 179 0.157013360194741 5 NA NA -5.76567584611348 LTS-016 chr17 6004 6115 112 * DOC2B 0.059 1 NA 0.425444195103888 3 0.253648050127205 2 2 0 -5.76443719948603 LTS-016 chr17 6116 4890932 4884817 * c(C17orf107, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, PRPF8, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, ENO3, RAP1GAP2, CAMTA2, ZZEF1, CLUH, SMG6, SHPK, ALOX15, RNF167, OR1A2, PELP1, GP1BA, LOC284009, VMO1, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, SMTNL2, RFLNB, ITGAE, GLTPD2, OR3A4P, C17orf97, MED11, NA NA NA NA NA NA NA NA NA LTS-016 MIR132, MIR212, MIR22, ARRB2, MNT, ASPA, MYO1C, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, GLOD4, ANKFY1, SERPINF1, INPP5K, PFN1, PITPNA, PLD2, SERPINF2, MRM3, VPS53, NCBP3, TSR1, PSMB6, CXCL16, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, BHLHA9, TLCD2, UBE2G1, TRPV1, YWHAE, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CAMKK1, DOC2B, SPATA22, MIR22HG, SCARF1, TM4SF5, RPH3AL, SPAG7, SGSM2) 0.0463179017850785 147 0.0288492380976133 0.664230588606783 7301 0.281092974057127 4 4 0 -6.74403376782208 LTS-016 NA NA NA NA LTS-016 chr17 4890933 4904164 13232 * c(KIF1C, CAMTA2, INCA1) 0.093 1 NA 0.555561613338359 47 0.217033351090705 3 3 0 -5.76562616908427 LTS-016 chr17 4904165 5036274 132110 * c(KIF1C, ZFP3, SLC52A1, ZNF232, USP6) 0.155360733178235 9 0.136556866461477 0.690458999587365 311 0.375498776852738 6 5 1 -6.82952538849198 LTS-016 chr17 5036275 5048152 11878 * USP6 NA 0 NA 0.659031350334868 47 0.1884274079496 4 NA NA -5.76441018410349 LTS-016 chr17 5048153 5048693 541 * USP6 NA 0 NA 0.466 1 NA NA NA NA NA LTS-016 chr17 5048694 5083008 34315 * c(ZNF594, USP6) 0.034 1 NA 0.519715165977983 43 0.171309990826019 3 3 0 -5.76464386074562 LTS-016 chr17 5083009 5346150 263142 * c(LOC100130950, SCIMP, NUP88, DHX33, C1QBP, RPAIN, ZNF594, RABEP1) 0.0555584706194777 8 0.0248736090781259 0.555147330914043 431 0.166864482426916 3 3 0 -6.84325472404519 LTS-016 chr17 5346151 8025712 2679562 * c(MIR4314, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4520-2, ALOX15P1, CLEC10A, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, CLDN7, DNAH2, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, FGF11, NLRP1, KDM6B, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15B, TMEM256, BCL6B, SENP3, SNORA67, LOC284023, SLC13A5, TMEM102, GPS2, NA NA NA NA NA NA NA NA NA LTS-016 GUCY2D, LOC339166, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, ATP1B2, MED31, DERL2, YBX2, POLR2A, FAM64A, XAF1, WRAP53, DHX33, PLSCR3, MIR497, NLGN2, ZBTB4, TRAPPC1, ALOXE3, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, TP53, LOC728392, MIS12, PHF23, PITPNM3, TEKT1, NAA38, NEURL4, HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, KCNAB3, TMEM88, FXR2, MPDU1, CD68, ACAP1, KIAA0753 NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 ) 0.0577805921583153 130 0.0224475284273906 0.657096961581623 5954 0.219591674040303 4 4 0 -6.80929499759729 LTS-016 NA NA NA NA LTS-016 chr17 8025713 8108331 82619 * c(NA, MIR4521, PER1, BORCS6, VAMP2, TMEM107, HES7, AURKB) 0.045 1 NA 0.650575975483282 323 0.164269412837103 4 4 0 -5.76469333952434 LTS-016 chr17 8108332 15458722 7350391 * c(MIR744, LOC100128288, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, USP43, KRBA2, COX10, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, TVP23C, ARHGEF15, PIK3R5, LINC00324, LINC00670, CDRT4, RANGRF, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PFAS, PMP22, ADPRM, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, RNF222, PIRT, TEKT3, ZNF18, CTC1, NDEL1, NA NA NA NA NA NA NA NA NA LTS-016 MGC12916, GAS7, MYH13, AURKB, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.0443275416234503 94 0.0327919406317435 0.671707036816572 5015 0.322680440004759 4 4 0 -6.76545446678269 LTS-016 NA NA NA NA LTS-016 chr17 15458723 15475328 16606 * c(TVP23C-CDRT4, TRIM16, TVP23C) 0.314 1 NA 0.729249529586678 39 0.235538292957627 5 5 0 -5.7662569081287 LTS-016 chr17 15475329 15499986 24658 * c(TRIM16, CDRT1) 0.153746248631586 8 0.117374172749253 0.685916144927733 89 0.746800359408774 7 6 1 -6.74383886233679 LTS-016 chr17 15499987 15501845 1859 * c(TRIM16, CDRT1) NA 0 NA 0.167 1 NA NA NA NA NA LTS-016 chr17 15501846 15518945 17100 * c(TRIM16, CDRT1) 0.0256666666666667 2 0.0176776695296637 0.320359821296475 39 0.21011323661238 7 7 0 -7.10155842982625 LTS-016 chr17 15518946 15519034 89 * c(TRIM16, CDRT1) NA 0 NA 0.546 1 NA NA NA NA NA LTS-016 chr17 15519035 15603031 83997 * c(TRIM16, CDRT1, ZNF286A) 0.26265004496892 4 0.164987625798624 0.602538913728736 117 0.116812203023166 4 3 1 -6.76547911976057 LTS-016 chr17 15603032 15643719 40688 * c(TBC1D26, ZNF286A) 0.034 1 NA 0.614153162777133 169 0.478254084517389 4 4 0 -5.76493352378677 LTS-016 chr17 15643720 16638086 994367 * c(MIR1288, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.0502266331405776 2 0.0544472221513642 0.635201064111543 978 1.23772212509383 4 4 0 -6.73359230445434 LTS-016 chr17 16638087 16638566 480 * c(USP32P1, CCDC144A) NA 0 NA 0.923 1 NA NA NA NA NA LTS-016 chr17 16638567 16734803 96237 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) NA 0 NA 1.18315656238592 41 0.519729905229865 8 NA NA -5.76509887316584 LTS-016 chr17 16734804 16796652 61849 * KRT16P2 NA 0 NA 0.756 1 NA NA NA NA NA LTS-016 chr17 16796653 18291559 1494907 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.0588627799705628 67 0.030241572232442 0.663987564447599 2709 0.203821969676817 4 4 0 -6.78855167612236 LTS-016 chr17 18291560 18291618 59 * EVPLL 0.112 1 NA 0.573217140499614 3 0.219402218159556 3 3 0 -5.76441990213669 LTS-016 chr17 18291619 18315385 23767 * EVPLL 0.425464704096157 2 0.089095454429505 0.812734443177863 15 0.302220795981695 6 3 3 -6.74619055143073 LTS-016 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.076 1 NA NA NA NA NA LTS-016 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.101 1 NA 0.0760977420540487 67 0.0859688656526366 0 0 0 -5.91328598247582 LTS-016 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 1.144 1 NA NA NA NA NA LTS-016 chr17 18483256 18653070 169815 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, ZNF286B) 0.266995952378633 6 0.199078627682632 0.598957846810661 325 0.205070650878793 4 3 1 -6.75577773787618 LTS-016 chr17 18653071 18678548 25478 * FBXW10 0.102 1 NA 0.662320676370542 56 0.260563429847755 4 4 0 -5.76441688393711 LTS-016 chr17 18678549 21094350 2415802 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.0735732197096144 60 0.0616408657278888 0.6439647263606 2177 0.247336322450678 4 4 0 -6.8335442243745 LTS-016 chr17 21094351 21194907 100557 * c(NATD1, DHRS7B, MAP2K3, TMEM11) NA 0 NA 0.617558442680521 66 0.137670231981692 4 NA NA -5.77762478082108 LTS-016 chr17 21194908 21198988 4081 * MAP2K3 NA 0 NA 1.01 1 NA NA NA NA NA LTS-016 chr17 21198989 21201719 2731 * MAP2K3 0.484 1 NA 0.835387836920628 14 0.228888103090274 5 5 0 -5.76444725408942 LTS-016 chr17 21201720 21208456 6737 * MAP2K3 0.28122636201979 10 0.149674461563904 0.965438064899028 60 0.45788668169847 4 3 1 -6.7369496211631 LTS-016 chr17 21208457 21217397 8941 * MAP2K3 0.393 1 NA 0.85565903553374 21 0.342445831656698 5 5 0 -5.76456630461479 LTS-016 chr17 21217398 21318543 101146 * c(KCNJ12, MAP2K3) 0.431838909379025 17 0.0326112349821166 0.884331570412299 44 0.339087271347439 6 3 3 -6.9012068106828 LTS-016 chr17 21318544 21318546 3 * KCNJ12 0.389 1 NA 2.487 1 NA NA NA NA NA LTS-016 chr17 21318547 21319008 462 * KCNJ12 0.359324535810032 11 0.0654513004246113 1.28596386303243 25 0.765250880430725 14 9 5 -6.73354320480582 LTS-016 chr17 21319009 21319069 61 * KCNJ12 0.239 1 NA 1.14535812636531 3 0.935961715741265 7 7 0 -5.76441019058471 LTS-016 chr17 21319070 21319908 839 * KCNJ12 0.293477106776956 16 0.07592866718177 1.39093517295786 34 0.893995605970052 14 10 4 -6.73334667678066 LTS-016 chr17 21319909 21319912 4 * KCNJ12 NA 0 NA 0.828 1 NA NA NA NA NA LTS-016 chr17 21319913 22066835 746923 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.29123078526099 22 0.16437469733977 0.719062257998859 229 0.41398100926069 4 3 1 -6.75904744246561 LTS-016 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.695 1 NA NA NA NA NA LTS-016 chr17 25620838 25752971 132134 * c(MIR4522, WSB1, TBC1D3P5) 0 1 NA 0.654699276371331 73 0.297333101695346 4 4 0 -5.76444348893094 LTS-016 chr17 25752972 27975282 2222311 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, NA NA NA NA NA NA NA NA NA LTS-016 RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.0399474518585853 34 0.0307812128733365 0.655414609103198 4114 0.214796853154471 4 4 0 -6.79383723138702 LTS-016 NA NA NA NA LTS-016 chr17 27975283 33501359 5526077 * c(MIR365B, MIR3184, AA06, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, UNC45B, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, TBC1D29, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, NLE1, FNDC8, RHOT1, COPRS, ADAP2, UTP6, PSMD11, RAD51D, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, BLMH, SH3GL1P1, NA NA NA NA NA NA NA NA NA LTS-016 SH3GL1P2, SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, GOSR1) 0.0556962332631852 63 0.0329339514982688 0.618336924266074 4524 0.239363931909631 4 4 0 -6.97556320387075 LTS-016 NA NA NA NA LTS-016 chr17 33501360 33749546 248187 * c(SLC35G3, UNC45B, SLFN5, SLFN12, SLFN11) 0.08 1 NA 0.583087208012078 301 0.122153063758563 4 4 0 -5.90924466094107 LTS-016 chr17 33749547 33769038 19492 * c(SLFN13, SLFN12) 0.240206443765609 9 0.138426374333474 0.584707393330063 149 0.189627488849799 5 4 1 -6.77432665179298 LTS-016 chr17 33769039 33770802 1764 * SLFN13 0.046 1 NA 0.528067491272738 7 0.189365481844727 3 3 0 -5.76444462949468 LTS-016 chr17 33770803 34432761 661959 * c(SLFN12L, C17orf50, SLFN13, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, PEX12, LYZL6, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, RASL10B) 0.0478421026897451 14 0.0162225253789393 0.612027084426857 1005 0.360872547850285 4 4 0 -6.75763521121899 LTS-016 chr17 34432762 34625714 192953 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.309721600106761 39 0.256395372509986 2 NA NA -5.80683710446378 LTS-016 chr17 34625715 34640930 15216 * c(CCL4L1, CCL3L3, CCL3L1, NA) NA 0 NA 2.498 1 NA NA NA NA NA LTS-016 chr17 34640931 36214044 1573114 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0494986353198651 20 0.0698980272291451 0.62263865514308 1557 0.633902319461941 4 4 0 -6.74047501282771 LTS-016 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.345 1 NA NA NA NA NA LTS-016 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) NA 0 NA 0.307918248496271 74 0.129820016808508 2 NA NA -5.93037374517601 LTS-016 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.545 1 NA NA NA NA NA LTS-016 chr17 36421727 39406419 2984693 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, NA NA NA NA NA NA NA NA NA LTS-016 PNMT, KRT20, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, KRTAP4-11, SMARCE1, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, PIP4K2B, PPP1R1B, MIEN1, MRPL45, KRTAP4-4, TNS4, FBXL20, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.0590644187864537 104 0.0316732274101968 0.647951413097352 6154 0.190857051093973 4 4 0 -6.797906047547 LTS-016 NA NA NA NA LTS-016 chr17 39406420 39406427 8 * KRTAP9-4 0.047 1 NA 2.388 1 NA NA NA NA NA LTS-016 chr17 39406428 39619219 212792 * c(KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRTAP9-9, KRTAP17-1, KRTAP9-4, KRT38, KRT37) 0.208104086678269 9 0.103063626518336 0.677691334801314 393 0.279829133704282 5 4 1 -6.79759171594475 LTS-016 chr17 39619220 39620399 1180 * KRT32 0.041 1 NA 0.754621922298958 5 0.278222572772232 5 5 0 -5.76445143109039 LTS-016 chr17 39620400 39994437 374038 * c(EIF1, P3H4, NT5C3B, LINC00974, GAST, KRT42P, KLHL10, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT32, KRT35, FKBP10, KRT36, HAP1) 0.0401771155899229 16 0.0298418051285999 0.695284843120812 974 0.223424748326549 4 4 0 -6.80708589050605 LTS-016 chr17 39994438 39998029 3592 * KLHL10 NA 0 NA 1.435 1 NA NA NA NA NA LTS-016 chr17 39998030 40384200 386171 * c(CNP, ZNF385C, KCNH4, KAT2A, NKIRAS2, HCRT, KLHL10, ACLY, KLHL11, RAB5C, STAT5B, DNAJC7, DHX58, TTC25, GHDC, HSPB9) 0.0351143081758124 6 0.0301557070331085 1.23405488070301 1101 0.275001507292767 8 8 0 -6.78465088376183 LTS-016 chr17 40384201 40441335 57135 * c(STAT5A, STAT5B) NA 0 NA 0.734 1 NA NA NA NA NA LTS-016 chr17 40441336 40926695 485360 * c(RAMP2-AS1, MIR5010, RAMP2, FAM134C, EZH1, TUBG2, CCR10, PTRF, PSMC3IP, HSD17B1, NAGLU, ATP6V0A1, STAT3, STAT5A, MLX, TUBG1, PLEKHH3, COASY, VPS25, CNTNAP1) 0.0427142223673594 14 0.0242953439214953 0.642815981036139 1198 0.15911548661896 4 4 0 -6.78959835085262 LTS-016 chr17 40926696 40939485 12790 * c(WNK4, VPS25) 0.054 1 NA 0.665497239276005 63 0.145019334127782 4 4 0 -5.76444854137456 LTS-016 chr17 40939486 41907079 967594 * c(LINC00910, MIR2117, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, VAT1, TMEM106A, CNTD1, RUNDC1, DHX8, DUSP3, ETV4, G6PC, C17orf105, COA3, AOC2, IFI35, ARL4D, LINC00671, NBR1, MEOX1, MPP3, SOST, RPL27, WNK4, BRCA1, AARSD1, RND2, AOC3, BECN1, AOC4P) 0.169181392839915 9 0.165917147998632 0.636501935404942 1562 0.179759843647547 4 3 1 -6.9878893528855 LTS-016 chr17 41907080 42254574 347495 * c(HDAC5, LSM12, CD300LG, NAGS, FAM215A, ASB16-AS1, MPP2, MPP3, PPY, PYY, C17orf53, TMEM101, G6PC3, ASB16) 0 1 NA 0.685484788138149 629 0.168380959507398 4 4 0 -5.77606640391009 LTS-016 chr17 42254575 44159874 1905300 * c(MAP3K14-AS1, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, CCDC43, KIF18B, GPATCH8, FZD2, GFAP, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, NMT1, SLC25A39, HIGD1B, ATXN7L3, SLC4A1, UBTF, FMNL1, TMUB2, ACBD4, DCAKD, DBF4B, MAP3K14, ASB16, EFTUD2) 0.0421613978886687 24 0.0256692662903336 0.674222031389318 2954 0.220506545376863 4 4 0 -6.79755925612032 LTS-016 chr17 44159875 44364336 204462 * character(0) NA 0 NA 0.358193639453602 75 0.142448315267407 2 NA NA -5.76505951157196 LTS-016 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.931 1 NA NA NA NA NA LTS-016 chr17 44408492 45050533 642042 * c(MIR5089, WNT3, WNT9B, GOSR2) 0.0546615822691495 4 0.00736545993132812 0.671803342760092 226 0.301082172229794 4 4 0 -6.9915717662069 LTS-016 chr17 45050534 45214473 163940 * c(RPRML, GOSR2, CDC27) 0.162 1 NA 0.564872188554543 105 0.150979978295646 3 3 0 -5.80860139674758 LTS-016 chr17 45214474 45258971 44498 * CDC27 0.217094479037434 13 0.106584503612187 0.779336142597643 101 0.331741694815722 5 4 1 -6.73623638508729 LTS-016 chr17 45258972 45266610 7639 * CDC27 0.059 1 NA 0.87411425162471 16 0.417364503961066 5 5 0 -5.76457754441872 LTS-016 chr17 45266611 48154817 2888207 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-016 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0527942614584061 70 0.032888005579133 0.624060195546807 3910 0.192848618253372 4 4 0 -6.87123053774597 LTS-016 NA NA NA NA LTS-016 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 0.808 1 NA NA NA NA NA LTS-016 chr17 48155444 48771682 616239 * c(CHAD, COL1A1, EME1, TMEM92, SAMD14, CACNA1G-AS1, ITGA3, HILS1, MRPL27, PDK2, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, ANKRD40) 0.0560984486264322 38 0.0522089303087406 0.688004716175628 2008 0.205307358703131 4 4 0 -6.75849294522844 LTS-016 chr17 48771683 65074573 16302891 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR3064, MIR5047, TOB1, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COX11, DYNLL2, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, ANKFN1, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, PPM1E, MMD, MTVR2, STXBP4, TANC2, OR4D1, GH1, GH2, CACNG5, CACNG4, MILR1, C17orf47, GDPD1, NA NA NA NA NA NA NA NA NA LTS-016 HLF, ICAM2, METTL2A, C17orf67, NACA2, SKA2, APOH, LRRC37A3, RNF126P1, YPEL2, C17orf82, TOB1-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, TACO1, MRPS23, PTRH2, LUC7L3, PECAM1, SEPT4, MBTD1, BCAS3, RNF43, MKS1, LINC00483, SMG8, TMEM100, MSX2P1, PRR11, PRKCA, TEX2, TEX14, CA10, CCDC47, PSMC5, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SCN4A, HEATR6, SRSF1, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, LOC729683, CA4, MIR454, TRIM25, VEZF1, CACNG1, DHX40, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, KIF2B, USP32, PPM1D, DGKE, RGS9, SPAG9, CEP95, MTMR4, ANKRD40, STRADA, PRR29, NOG, TSPOAP1, TBX4, CD79B, MRC2, HELZ, MED13) 0.0490505594702315 106 0.0366830135904028 0.635385206928232 9187 0.228125327844305 4 4 0 -6.96799484498973 LTS-016 NA NA NA NA LTS-016 chr17 65074574 67512916 2438343 * c(SNORA38B, LINC00674, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, C17orf58, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, MAP2K6, PSMD12, MIR635, SLC16A6, HELZ) 0.0608663223244936 27 0.0267006194108503 0.592856544253135 2081 0.170930854702493 4 4 0 -7.34511008072565 LTS-016 chr17 67512917 67513003 87 * MAP2K6 0.064 1 NA 1.058 1 NA NA NA NA NA LTS-016 chr17 67513004 72744798 5231795 * c(CD300LD, LINC00673, MIR3615, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, CDC42EP4, LINC00469, RAB37, CD300E, GPR142, KCNJ2, KCNJ16, BTBD17, KCNJ2-AS1, LINC00511, LOC400620, SDK2, C17orf80, GPRC5C, MAP2K6, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, SLC9A3R1, COG1, TTYH2) 0.0494700702069569 46 0.0317353564694261 0.679257463153119 2010 0.284876236641009 4 4 0 -6.7693680848702 LTS-016 chr17 72744799 72869078 124280 * c(MIR3615, FDXR, NAT9, GRIN2C, TMEM104, SLC9A3R1) 0.077 1 NA 0.677328016026175 325 0.198601106890469 4 4 0 -5.76587937891327 LTS-016 chr17 72869079 73038746 169668 * c(ATP5H, USH1G, FDXR, KCTD2, FADS6, HID1, CDR2L, MRPL58, OTOP3, OTOP2) 0.276626452738561 9 0.179740090130165 0.676946306125384 399 0.152193821930328 4 3 1 -6.73636911620603 LTS-016 chr17 73038747 73049228 10482 * c(ATP5H, KCTD2) 0.058 1 NA 0.712852660106642 19 0.276703073064386 4 4 0 -5.76492269295846 LTS-016 chr17 73049229 80363378 7314150 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, SLC25A10, NOTUM, TMC8, NA NA NA NA NA NA NA NA NA LTS-016 AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, GCGR, UTS2R, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, SAP30BP, H3F3B, NT5C, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, ZACN, ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.0497571308728592 255 0.0265812523536183 0.670278898615223 11610 0.256558976591163 4 4 0 -6.75319211961741 LTS-016 NA NA NA NA LTS-016 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.752 1 NA NA NA NA NA LTS-016 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.0650525710707028 3 0.0311929479209644 1.19221860200352 39 0.537158211953765 18 17 1 -6.76726813687731 LTS-016 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.559 1 NA NA NA NA NA LTS-016 chr17 80391535 81009622 618088 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0404889020843539 11 0.0271708399843388 0.643367837731852 849 0.179228470419978 4 4 0 -6.80814808976719 LTS-016 chr17 81009623 81083625 74003 * c(B3GNTL1, METRNL) NA 0 NA 0.656176729830175 33 0.16094174788451 4 NA NA -5.76443547148871 LTS-016 chr18 116845 122320 5476 * ROCK1P1 NA 0 NA 0.550004052149116 51 0.630256805424831 3 NA NA -5.76445652567851 LTS-016 chr18 122321 158470 36150 * character(0) NA 0 NA 1.396 1 NA NA NA NA NA LTS-016 chr18 158471 214770 56300 * c(USP14, THOC1) 0.235 1 NA 1.4566142196092 75 0.214860063406038 9 9 0 -5.76553299885036 LTS-016 chr18 214771 1359559 1144789 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, LINC00470, TYMS, YES1, COLEC12, THOC1) 0.226356720142159 6 0.0209061394491347 1.33691022885248 602 0.331627627485809 9 7 2 -6.85736995609845 LTS-016 chr18 2537498 5133025 2595528 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, DLGAP1-AS3, SMCHD1, DLGAP1-AS5, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, LOC727896, EMILIN2, MYOM1, DLGAP1, LPIN2) 0.316278181476389 27 0.0805538166626348 0.873117564111564 1239 0.355622580437141 6 4 2 -6.89435693366535 LTS-016 chr18 5133026 8546022 3412997 * c(LINC01387, LOC100192426, MIR4317, MIR3976, LINC00526, EPB41L3, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.214775670621434 16 0.105945819486503 1.2587888835871 1292 0.34635228170742 8 6 2 -6.85617548309482 LTS-016 chr18 8546023 10530863 1984841 * c(RALBP1, RAB31, APCDD1, RAB12, ANKRD12, MTCL1, NDUFV2, TWSG1, TXNDC2, NAPG, VAPA, PPP4R1) 0.259917694917775 10 0.0575059417219937 1.14192285793365 1086 0.321407632100503 8 6 2 -6.8314682458811 LTS-016 chr18 10530864 10532675 1812 * NAPG NA 0 NA 0.723 1 NA NA NA NA NA LTS-016 chr18 10532676 15004062 4471387 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, ZNF519, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, RNMT, NAPG) 0.315124681250267 62 0.13086820284191 0.927430367876975 2257 1.35160258315222 6 4 2 -6.7604646687926 LTS-016 chr18 15004063 15006193 2131 * character(0) NA 0 NA 1.0918150717908 31 0.506857486704061 7 NA NA -5.76441073472353 LTS-016 chr18 18529727 18529837 111 * ROCK1 0.353 1 NA 0.680062699696576 3 0.0374699879903904 4 4 0 -5.76445800142897 LTS-016 chr18 18529838 23748455 5218618 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.333794007422276 42 0.0916555594579982 0.886220301133681 2793 0.266507334238688 6 4 2 -6.97823105799557 LTS-016 chr18 23748456 23748515 60 * PSMA8 NA 0 NA 0.701 1 NA NA NA NA NA LTS-016 chr18 23748516 23759049 10534 * PSMA8 NA 0 NA 0.471160390213261 39 0.176286032294638 3 NA NA -5.76570581879987 LTS-016 chr18 23759050 23772280 13231 * PSMA8 NA 0 NA 0.898 1 NA NA NA NA NA LTS-016 chr18 23772281 48450503 24678223 * c(CDH2, ZSCAN30, SNORD58C, MIR302F, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, ACAA2, ZNF271P, MAPRE2, HAUS1, LOXHD1, INO80C, PSMA8, C18orf25, SLC25A52, DSG4, AQP4-AS1, TCEB3C, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, TRAPPC8, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, SNORD58B, SNORD58A, KCTD1, LINC00907, NA NA NA NA NA NA NA NA NA LTS-016 SIGLEC15, ST8SIA5, CXXC1, AQP4, CCDC178, MIR187, SMAD2, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, RNF138, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ELP2, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RIT2, RPL17, KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, SCARNA17, SYT4, TAF4B, TTR, PCAT18, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, NOL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PSTPIP2, PIAS2, B4GALT6, LIPG, CTIF) 0.28609997819903 129 0.131315716290782 0.921294237233142 8260 0.368151971320024 6 4 2 -6.9833515847643 LTS-016 NA NA NA NA LTS-016 chr18 48450504 77917479 29466976 * c(PARD6G-AS1, LOC100131655, LINC01630, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, MIR4529, MIR3591, MIR5011, LINC-ROR, LINC01544, TSHZ1, CD226, MALT1, TXNL4A, POLI, ALPK2, FAM69C, STARD6, CCBE1, CBLN2, CYB5A, C18orf54, DCC, FBXO15, DOK6, RNF152, LINC00305, FECH, ADNP2, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, GALR1, RTTN, KCNG2, SALL3, CDH20, DYNAP, BOD1L2, ZADH2, SMIM21, LINC00908, HMSD, NA NA NA NA NA NA NA NA NA LTS-016 LOC284294, CDH19, TIMM21, GRP, RAX, LOC339298, CPLX4, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, SMAD4, MBP, MC4R, ME2, HSBP1L1, NARS, NFATC1, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, ZCCHC2, ZNF532, ELAC1, ZNF407, CNDP2, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, LOC643542, C18orf63, SNORA37, TCF4, ZNF236, CCDC102B, RBFA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PQLC1, CCDC68, NETO1, PARD6G, CNDP1, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, CTDP1, DSEL, SOCS6, TXNL1, ONECUT2, VPS4B, ZNF516) 0.334200988696987 152 0.0951200082198821 0.879665899606674 9440 0.338428910776985 6 4 2 -7.64168904480865 LTS-016 NA NA NA NA LTS-016 chr18 77917480 78005362 87883 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.819501088518953 54 0.174691614074496 5 NA NA -5.76481225317514 LTS-016 chr19 107416 362283 254868 * c(LINC01002, THEG, MIER2, OR4F17, PLPP2) 0.109 1 NA 0.396198627739729 109 0.122066431616104 2 2 0 -5.84726949574714 LTS-016 chr19 362284 7570905 7208622 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, TUBB4A, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, NA NA NA NA NA NA NA NA NA LTS-016 TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ADGRE1, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 GZMM, ADGRE4P, ADAMTSL5, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, ONECUT3, MEX3D, PRSS57, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, FLJ25758, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PSPN, PRTN3, AZU1, NCLN, GPR108, SPPL2B, DUS3L, SHD, PTBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 WDR18, REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, TLE6, PLPPR3, DENND1C, ZNF556, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.0943374446082984 287 0.0617230592602421 0.39050260362173 12073 0.162006890817464 2 2 0 -7.56223205767854 LTS-016 NA NA NA NA LTS-016 chr19 7570906 7570978 73 * C19orf45 0.095 1 NA 0.733 1 NA NA NA NA NA LTS-016 chr19 7570979 7936007 365029 * c(PET100, CLEC4M, PNPLA6, EVI5L, TRAPPC5, PCP2, ZNF358, MCEMP1, FCER2, CD209, CLEC4G, C19orf45, CLEC4GP1, RETN, XAB2, MCOLN1, CAMSAP3, STXBP2, PRR36) 0.0609666708085466 19 0.0549497910111016 0.426891500022296 971 0.246608214222797 3 3 0 -6.84761113127719 LTS-016 chr19 7936008 8977679 1041672 * c(RAB11B-AS1, TGFBR3L, MIR4999, TIMM44, ZNF558, ELAVL1, KANK3, ACTL9, OR2Z1, LYPLA2P2, CTXN1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RPS28, CCL25, SNAPC2, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, MBD3L1, RAB11B, MUC16) 0.0913702148006248 59 0.0480304854000201 0.381111845279304 1685 0.175757043074019 2 2 0 -6.78683203124373 LTS-016 chr19 8977680 9000185 22506 * MUC16 0.358 1 NA 0.370569066025902 79 0.141059971685147 2 2 0 -5.76478812306249 LTS-016 chr19 9000186 9021159 20974 * MUC16 0.284174844181576 13 0.133787479771426 0.416086351238559 163 0.348308443146399 4 3 1 -6.75778028536722 LTS-016 chr19 9021160 9024297 3138 * MUC16 0.115 1 NA 0.363451889561505 7 0.0646525512331291 2 2 0 -5.76441811074386 LTS-016 chr19 9024298 10073675 1049378 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, OR7G2, OR7G3, COL5A3, PIN1, ZNF562, FBXL12, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2, MUC16) 0.0849384315803713 48 0.0589404638609321 0.372383741108203 1793 0.333083640069158 2 2 0 -6.7425951200652 LTS-016 chr19 10073676 10076946 3271 * COL5A3 0 1 NA 1.82263045100335 2 2.49891536471326 12 12 0 -5.7644101848716 LTS-016 chr19 10076947 10078125 1179 * COL5A3 0.365 1 NA 0.833617417415864 15 0.28521362085954 5 5 0 -5.76441921901027 LTS-016 chr19 10078126 11727581 1649456 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, NA NA NA NA NA NA NA NA NA LTS-016 KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.340370834309572 79 0.0758022847153192 0.965183495557576 3893 0.28325054147644 6 4 2 -6.73475928838807 LTS-016 NA NA NA NA LTS-016 chr19 11727582 12740997 1013416 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.348241774875817 38 0.0747524553943362 0.867252915824362 1695 0.325424188516584 6 4 2 -6.78999207114347 LTS-016 chr19 12740998 12741253 256 * character(0) NA 0 NA 0.978 1 NA NA NA NA NA LTS-016 chr19 12741254 13323391 582138 * c(RNASEH2A, KLF1, NACC1, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, HOOK2, TNPO2, JUNB, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, TRMT1, RAD23A, PRDX2, CACNA1A, C19orf43, CALR, RTBDN, FBXW9, WDR83, STX10, GADD45GIP1, IER2) 0.344390927352569 6 0.065132685087187 0.966597395329193 1542 0.202628399627541 6 4 2 -6.73467550119413 LTS-016 chr19 13323392 13352382 28991 * CACNA1A 0 1 NA 1.05047650829489 53 0.287932513057264 7 7 0 -5.76492584451074 LTS-016 chr19 13352383 14153293 800911 * c(RLN3, LOC284454, C19orf53, NANOS3, MIR181C, CC2D1A, MIR181D, RFX1, ZSWIM4, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, DCAF15, IL27RA) 0.187408046641824 9 0.185261601825935 0.981178723004255 841 0.364686299494062 6 5 1 -6.73566666212921 LTS-016 chr19 14153294 14162676 9383 * IL27RA 0.475 1 NA 0.928126956026781 39 0.214189020662124 6 6 0 -5.76451367170613 LTS-016 chr19 14162677 19249238 5086562 * c(TMEM221, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, GIPC1, ILVBL, CYP4F8, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, CALR3, LRRC25, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, LINC00905, SSBP4, FAM129C, NR2F6, ADGRL1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, BRD4, CASP14, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, OR10H3, OR10H2, NA NA NA NA NA NA NA NA NA LTS-016 OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, BABAM1, ADGRE2, DNAJB1, PALM3, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, CYP4F3, RAB8A, MYO9B, NDUFB7, NOTCH3, PDE4C, ISYNA1, PIK3R2, DDX49, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, PRKACA, ASF1B, PKN1, USE1, PTGER1, ANO8, CYP4F11, EPS15L1, WIZ, RAB3A, UPF1, RPL18A, C19orf67, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 RASAL3, MRPL34, SLC1A6, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, EPHX3, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, SAMD1, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, IL27RA, GDF15, TECR, ADGRE5) 0.33316879733552 202 0.0844038946824414 0.972860549705218 8608 0.356843706912733 6 4 2 -6.7481223832336 LTS-016 NA NA NA NA LTS-016 chr19 19249239 19257383 8145 * c(MEF2B, BORCS8-MEF2B, TMEM161A) 0.248 1 NA 0.901285144460767 27 0.259642659324909 6 6 0 -5.76465729414785 LTS-016 chr19 19257384 19770774 513391 * c(MEF2B, NR2C2AP, NCAN, CILP2, MAU2, YJEFN3, HAPLN4, BORCS8-MEF2B, NDUFA13, GMIP, TM6SF2, GATAD2A, ATP13A1, SUGP1, BORCS8, PBX4, TSSK6, RFXANK, LPAR2) 0.321470505422698 39 0.0718252584143545 0.999807391915294 1288 0.319165914235858 6 4 2 -6.79021681772821 LTS-016 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.66 1 NA NA NA NA NA LTS-016 chr19 19772755 22942325 3169571 * c(ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, LINC00664, ZNF506, GOLGA2P9, ZNF253, ATP13A1, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.320072486088914 23 0.0866494915585301 0.871830945411977 1115 0.343573583313292 6 4 2 -6.90522307676949 LTS-016 chr19 22942326 24345121 1402796 * c(HAVCR1P1, ZNF730, ZNF681, ZNF675, ZNF728, RPSAP58, ZNF724, ZNF726, ZNF91, ZNF99, ZNF254) NA 0 NA 0.924897308960078 441 0.252126109594279 6 NA NA -5.77839260498165 LTS-016 chr19 28247625 30021023 1773399 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.025 1 NA 0.69122836114201 47 0.173446238341509 4 4 0 -5.84546162785483 LTS-016 chr19 30021024 35849791 5828768 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, NA NA NA NA NA NA NA NA NA LTS-016 ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.0600724225290017 83 0.0562412993238303 0.665159429556866 3411 0.279001438854768 4 4 0 -6.75749379854213 LTS-016 NA NA NA NA LTS-016 chr19 35849792 35851352 1561 * FFAR3 NA 0 NA 0.537456231202003 39 0.665103192301959 3 NA NA -5.7644158163992 LTS-016 chr19 35851353 35862196 10844 * FFAR3 NA 0 NA 0.078 1 NA NA NA NA NA LTS-016 chr19 35862197 35863805 1609 * character(0) 0.057 1 NA 0.106924038267351 39 0.0923569981902284 0 0 0 -5.79205062260593 LTS-016 chr19 35863806 35863820 15 * character(0) NA 0 NA 0.334 1 NA NA NA NA NA LTS-016 chr19 35863821 40389790 4525970 * c(LINC01531, LOC100129935, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, DLL3, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, NA NA NA NA NA NA NA NA NA LTS-016 FBL, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, LGALS13, HNRNPL, APLP1, ZNF260, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, NPHS1, ATP4A, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 LRFN1, ZFP14, ZNF529, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, TIMM50, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.046136198943792 122 0.0334306200084975 0.670071668618455 8119 0.26974619290358 4 4 0 -6.75088850224122 LTS-016 NA NA NA NA LTS-016 chr19 40389791 40391997 2207 * FCGBP NA 0 NA 0.272 1 NA NA NA NA NA LTS-016 chr19 40391998 40408045 16048 * FCGBP 0.387211702044305 2 0.0226274169979695 0.426286228861598 40 0.225111459572296 5 3 2 -6.85668058012344 LTS-016 chr19 40408046 40715110 307065 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.0325529575594983 3 0.00862167810425171 0.605221762218609 560 0.13963843867909 5 5 0 -7.91507430118845 LTS-016 chr19 40715111 40718740 3630 * MAP3K10 NA 0 NA 0.651 1 NA NA NA NA NA LTS-016 chr19 40718741 49954766 9236026 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, DACT3-AS1, GFY, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, NA NA NA NA NA NA NA NA NA LTS-016 RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, HNRNPUL1, CLASRP, KPTN, EGLN2, PTH2, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CEACAM20, NTN5, IRGQ, ZNF428, C19orf47, CRX, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, CCDC155, DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DBP, ZNF296, DEDD2, ZNF114, SPACA4, DMPK, DMWD, MEGF8, CADM4, EMP3, ERCC1, ERCC2, ERF, AKT2, CARD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CYP2G1P, CIC, ZC3H4, FBXO46, ETHE1, FOSB, SYNGR4, PRG1, CBLC, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, GIPR, ZNF285, LYPD3, BBC3, DKKL1, C5AR2, DHDH, GPR4, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 EHD2, FOXA3, HRC, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNA7, B3GNT8, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIPE, BCAM, MAP3K10, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, HSD17B14, PLAUR, RAB4B, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 AXL, SMG9, IRGC, CABP5, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, CD177, PTGIR, PNMAL2, PLEKHA4, PRX, SPTBN4, MARK4, BAX, PVR, NECTIN2, BCAT2, BCKDHA, RELB, BCL3, RPL18, RPS19, RTN2, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SULT2B1, SULT2A1, SNORD23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, GEMIN7, COQ8B, CNTD2, OPA3, ITPKC, B9D2, CALM3, RSPH6A, SYMPK, MIA, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, CNFN, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, CYTH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SHKBP1, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34, CD79A) 0.0530741427417167 234 0.0491867088202314 0.672304211207144 15383 0.305219503866378 4 4 0 -6.76053142053416 LTS-016 NA NA NA NA LTS-016 chr19 49954767 49995590 40824 * c(ALDH16A1, FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, PIH1D1) NA 0 NA 0.661982079468613 165 0.156266742074225 4 NA NA -5.7644348485503 LTS-016 chr19 49995591 49999619 4029 * character(0) NA 0 NA 1.526 1 NA NA NA NA NA LTS-016 chr19 49999620 50095051 95432 * c(FCGRT, MIR150, NOSIP, PRRG2, RCN3, PRR12, RPS11, SNORD35B) 0.385 1 NA 0.99128215903128 181 0.265080226455973 6 6 0 -5.76551238055057 LTS-016 chr19 50095052 52132276 2037225 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, KLK11, KLK8, FAM71E1, PNKP, SIGLEC11, CLDND2, JOSD2, IZUMO2, CPT1C, VSIG10L, C19orf84, AP2A1, ADM5, ETFB, ATF5, NUP62, NAPSB, KLK5, ZNF473, IL4I1, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, PRMT1, C19orf81, KLK3, IRF3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, NA NA NA NA NA NA NA NA NA LTS-016 KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, PTOV1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, PRR12, SCAF1, TSKS, KLKP1, RRAS, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, TBC1D17, MYH14, FUZ, MED25, BCL2L12, SYT3, AKT1S1, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.304819700977873 106 0.10945174036124 0.996527275497942 4391 0.415603299071362 7 5 2 -6.80844636883362 LTS-016 NA NA NA NA LTS-016 chr19 52132277 52149142 16866 * c(SIGLEC14, SIGLEC5) NA 0 NA 0.350301385439288 39 0.442803775430791 2 NA NA -5.76446513012914 LTS-016 chr19 52149143 52195905 46763 * c(SIGLEC14, MIR99B) NA 0 NA 1.104 1 NA NA NA NA NA LTS-016 chr19 52195906 53770270 1574365 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, MIRLET7E, MIR125A, MIR99B, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432 NA NA NA NA NA NA NA NA NA LTS-016 ) 0.333320081797988 47 0.060051142249556 0.915428812694298 2047 0.290956553310839 6 4 2 -6.76739818160334 LTS-016 NA NA NA NA LTS-016 chr19 53770271 53770286 16 * VN1R4 NA 0 NA 1.227 1 NA NA NA NA NA LTS-016 chr19 53770287 53804788 34502 * c(BIRC8, VN1R4, FAM90A27P) 0.326302397358075 4 0.0186256990920252 1.33283751219779 97 0.845969229768304 19 13 6 -6.83849307589509 LTS-016 chr19 53804789 53818490 13702 * character(0) NA 0 NA 0.597 1 NA NA NA NA NA LTS-016 chr19 53818491 54080144 261654 * c(ZNF813, TPM3P9, ZNF525, ZNF761, ZNF331, ZNF765, ZNF845) 0.336325651208615 26 0.0382369132967286 0.860144900673895 416 0.263326786436646 6 4 2 -6.7735227037793 LTS-016 chr19 54080145 54105319 25175 * c(LOC284379, ZNF331) 0 1 NA 0.874737217697568 71 0.463078752249235 5 5 0 -5.76486635706194 LTS-016 chr19 54105320 54297351 192032 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, LOC284379, MIR372, MIR373, DPRX, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, NA NA NA NA NA NA NA NA NA LTS-016 MIR527, MIR516A1, MIR516A2, MIR519A2, NLRP12) 0.403880158952856 2 0.0855599205235722 0.847537201878753 225 0.250618540371174 5 3 2 -6.74608792502985 LTS-016 NA NA NA NA LTS-016 chr19 54297352 54566901 269550 * c(MIR935, VSTM1, PRKCG, CACNG8, CACNG7, CACNG6, NLRP12, MYADM) 0.15891937126746 7 0.175605618740783 0.955310490437418 537 0.54280323662671 7 6 1 -6.74503087270651 LTS-016 chr19 54566902 54579363 12462 * c(VSTM1, TARM1) 0.408 1 NA 0.984899876278984 29 0.608106051970665 6 6 0 -5.76442872484122 LTS-016 chr19 54579364 54724693 145330 * c(LILRB3, OSCAR, TMC4, PRPF31, TFPT, TARM1, NDUFA3, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.306068891942405 22 0.10199762326405 0.985631667130656 667 0.261905877749516 7 5 2 -6.75295038540567 LTS-016 chr19 54724694 54725685 992 * c(LILRB3, LILRA6) NA 0 NA 1.824 1 NA NA NA NA NA LTS-016 chr19 54725686 54743856 18171 * c(LILRB3, LILRA6) 0.138866377006835 5 0.0905113252582239 2.25264616636154 45 2.06897188223884 16 14 2 -6.7339608948893 LTS-016 chr19 54743857 54744026 170 * c(LILRB3, LILRA6) NA 0 NA 0.948 1 NA NA NA NA NA LTS-016 chr19 54744027 54800203 56177 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA6) 0.325181144566089 5 0.0395385887456798 0.95499258826001 194 0.436443525239848 9 6 3 -6.83280187644078 LTS-016 chr19 54800204 54804771 4568 * c(LILRA3, LILRA6) NA 0 NA 0.536036585604631 39 0.0857147924282947 3 NA NA -5.76531188216137 LTS-016 chr19 54804772 54818321 13550 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-016 chr19 54818322 55286925 468604 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.326735241047536 20 0.0986233665063844 0.957122983822324 904 0.575038495696969 6 4 2 -6.74831486551271 LTS-016 chr19 55286926 55294338 7413 * c(KIR2DL1, KIR2DL3, KIR2DS4) NA 0 NA 0.573 1 NA NA NA NA NA LTS-016 chr19 55294339 55336491 42153 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.327376983329907 12 0.113282798448142 0.792159297886136 114 1.37769901153034 9 6 3 -6.74382365132115 LTS-016 chr19 55336492 55336581 90 * c(KIR2DS4, KIR3DL1) NA 0 NA 2.127 1 NA NA NA NA NA LTS-016 chr19 55336582 55358615 22034 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.206155537090181 39 0.24114883885918 1 NA NA -5.76469138420147 LTS-016 chr19 55358616 55358658 43 * c(KIR2DS4, KIR3DL1) 0.409 1 NA 3.482 1 NA NA NA NA NA LTS-016 chr19 55358659 59074653 3715995 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, NA NA NA NA NA NA NA NA NA LTS-016 FKBP1AP1, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.3300439953404 229 0.091606502825076 0.966174291303042 7362 0.478676192053342 6 4 2 -6.74529857112956 LTS-016 NA NA NA NA LTS-016 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.947530413667133 35 0.152699243035221 6 NA NA -5.76442693681405 LTS-016 chr20 68260 389456 321197 * c(RBCK1, C20orf96, DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, TRIB3, SOX12, NRSN2, DEFB126, ZCCHC3) 0.047 1 NA 0.61179426458956 465 0.152525016578395 4 4 0 -5.8092872644491 LTS-016 chr20 389457 1559302 1169846 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, RAD21L1, TCF15, FAM110A, SCRT2, PSMF1, SNPH) 0.0531882310251192 41 0.0308055269035425 0.667970960921329 1473 0.36619612426055 4 4 0 -6.74157225140832 LTS-016 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.078 1 NA NA NA NA NA LTS-016 chr20 1569093 1592348 23256 * SIRPB1 NA 0 NA 0.134709850789952 39 0.142137475981082 1 NA NA -5.9075148581892 LTS-016 chr20 1592349 1600390 8042 * SIRPB1 NA 0 NA 0.714 1 NA NA NA NA NA LTS-016 chr20 1600391 14306953 12706563 * c(SNORD119, SNAP25-AS1, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, ISM1-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, MACROD2, ISM1, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, UBOX5, BTBD3, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, GNRH2, TMEM230, LOC339593, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, ESF1, TRMT6, PDYN, NA NA NA NA NA NA NA NA NA LTS-016 PLCB4, HAO1, SMOX, CRLS1, C20orf27, AVP, SPTLC3, AP5S1, SIRPG, FERMT1, TASP1, PRNP, TMX4, GPCPD1, CPXM1, PAK5, MAVS, EBF4, PTPRA, FASTKD5, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, NDUFAF5, ZNF343, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.0499045504601205 149 0.0320528865867843 0.651581892133686 7357 0.241672678205728 4 4 0 -6.74843476256066 LTS-016 NA NA NA NA LTS-016 chr20 14306954 14308225 1272 * c(MACROD2, FLRT3) NA 0 NA 0.676965236934982 29 0.139141757109175 4 NA NA -5.7644395884664 LTS-016 chr20 14308226 14474144 165919 * c(MACROD2, FLRT3) NA 0 NA 1.741 1 NA NA NA NA NA LTS-016 chr20 14474145 15874325 1400181 * c(MACROD2-AS1, MACROD2) 0.421 1 NA 1.59500022686935 39 0.23784605302437 10 10 0 -5.77707844604812 LTS-016 chr20 15874326 18794484 2920159 * c(C20orf78, LOC100270804, PET117, MIR3192, SEC23B, POLR3F, RBBP9, DSTN, MACROD2, BANF2, SCP2D1, SNX5, LINC00652, LINC00493, LINC00851, PCSK2, DZANK1, KIF16B, OTOR, KAT14, OVOL2, RRBP1, BFSP1, SNRPB2, SNORD17, ZNF133, MGME1, DTD1) 0.318170875181864 27 0.0813725385402841 1.7744300613489 1660 1.9636036312164 13 9 4 -6.74133675153121 LTS-016 chr20 18794485 18794525 41 * c(C20orf78, SCP2D1) NA 0 NA 0.86 1 NA NA NA NA NA LTS-016 chr20 18794526 21195409 2400884 * c(C20orf78, LOC100130264, SCP2D1, CFAP61, INSM1, NAA20, CRNKL1, RIN2, KIZ, RALGAPA2, SLC24A3) 0.386656174812066 26 0.0893825744504185 1.49912517296062 1099 0.473275090073114 10 6 4 -6.74140789662539 LTS-016 chr20 21195410 21196205 796 * KIZ NA 0 NA 1.012 1 NA NA NA NA NA LTS-016 chr20 21196206 21312325 116120 * c(XRN2, KIZ) 0.33188466856488 2 0.0325269119345812 0.89374996827934 62 0.218833831107599 6 4 2 -6.80269068301296 LTS-016 chr20 21312326 21324889 12564 * XRN2 0.33 1 NA 0.863823364181176 41 0.135684632557247 5 5 0 -5.76629878033771 LTS-016 chr20 21324890 23063779 1738890 * c(LINC01432, LINC00261, XRN2, CD93, LOC284788, FOXA2, NKX2-2, PAX1, NKX2-4, SSTR4, THBD) 0.203671555651321 9 0.145386553711132 1.01046221466798 493 0.446547425560959 6 5 1 -6.75488197038761 LTS-016 chr20 23063780 23064912 1133 * CD93 0.374 1 NA 0.987562451619846 19 0.225079453158031 6 6 0 -5.76442475464212 LTS-016 chr20 23064913 25196287 2131375 * c(CST8, CSTL1, CST9L, CST9, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, CD93, LOC284798, NXT1, VSX1, FLJ33581, APMAP, NAPB, GZF1, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6) 0.313455759198044 25 0.104788071840262 0.946992691087428 977 0.442846683234735 6 4 2 -6.77927818824321 LTS-016 chr20 25196288 25196376 89 * ENTPD6 NA 0 NA 1.173 1 NA NA NA NA NA LTS-016 chr20 25196377 25490430 294054 * c(NINL, ABHD12, PYGB, ENTPD6, GINS1) 0.305743081568033 3 0.251468354536577 1.45681993222597 513 0.468420482059239 10 7 3 -6.73610314533645 LTS-016 chr20 25490431 25491252 822 * NINL NA 0 NA 0.794 1 NA NA NA NA NA LTS-016 chr20 25491253 26188981 697729 * c(LOC100134868, NANP, NCOR1P1, NINL, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.348187828816547 20 0.101105195347795 1.24392269895997 284 0.833445356238168 9 6 3 -6.74629949426608 LTS-016 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.33208953681812 3 0.095840144685478 9 NA NA -5.76441638711074 LTS-016 chr20 29625845 29625876 32 * FRG1BP 0.43 1 NA 1.227 1 NA NA NA NA NA LTS-016 chr20 29625877 29652097 26221 * c(MLLT10P1, FRG1BP) 0.340129858936045 13 0.0861848787974627 0.97926580019467 38 0.464368912058599 6 4 2 -6.73352574742267 LTS-016 chr20 29652098 29652099 2 * FRG1BP 0.259 1 NA 3.779 1 NA NA NA NA NA LTS-016 chr20 29652100 31958355 2306256 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, BCL2L1, BPIFB2, HM13, PDRG1, COX4I2, MYLK2, BPIFB1, KIF3B, TM9SF4) 0.302023075905103 50 0.184132460085513 1.50238661427208 3075 0.80140579834823 10 7 3 -6.73566214297693 LTS-016 chr20 31958356 31981849 23494 * CDK5RAP1 0.371 1 NA 1.50592740903199 42 0.364389780744831 10 10 0 -5.76449471740171 LTS-016 chr20 31981850 33902549 1920700 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, PXMP4, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, EIF6, ASIP, CDK5RAP1, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, GDF5, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.394985521290126 49 0.0749434650865816 1.50383198914435 2497 0.39886761523353 10 6 4 -6.74098565563864 LTS-016 chr20 33902550 34743665 841116 * c(RBM12, CEP250, ROMO1, C20orf173, CNBD2, EPB41L1, PHF20, SCAND1, ERGIC3, UQCC1, NORAD, SPAG4, GDF5, CPNE1, NFS1, RBM39) 0.424382583889227 50 0.079627964014291 1.35777838764105 1505 0.387188073602665 9 5 4 -6.75305689284066 LTS-016 chr20 34743666 34761625 17960 * EPB41L1 NA 0 NA 2.142 1 NA NA NA NA NA LTS-016 chr20 34761626 36997632 2236007 * c(LOC100287792, TGIF2-C20orf24, LINC00489, MYL9, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, LBP, NNAT, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, BPI, SRC, TGM2, DSN1, SLA2, KIAA1755, TTI1) 0.377068366500017 48 0.120986281899236 1.48782848145623 2773 0.419610620763592 10 6 4 -6.75345628976466 LTS-016 chr20 36997633 37002515 4883 * LBP 0 1 NA 1.48190675329589 19 0.644133136141918 10 10 0 -5.7644239935543 LTS-016 chr20 37002516 37650678 648163 * c(SNHG11, SLC32A1, ADIG, PPP1R16B, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, DHX35, SNORA71E, SNORA71C, SNORA71D, ACTR5, FAM83D) 0.247338568493055 9 0.231986050825858 1.42574230101149 806 0.531493208979691 9 7 2 -6.73504560407427 LTS-016 chr20 37650679 37668272 17594 * DHX35 0.481 1 NA 1.42387221779316 51 0.366771122732677 9 9 0 -5.76443134955334 LTS-016 chr20 37668273 40179920 2511648 * c(ZHX3, LOC339568, PLCG1, DHX35, LPIN3, TOP1, CHD6, EMILIN3, MAFB) 0.443134971591992 9 0.0319965275893772 1.41864251583329 1137 0.330546416373418 10 5 5 -7.2836059491782 LTS-016 chr20 40179921 40701495 521575 * c(PTPRT, CHD6) 0 1 NA 1.49136107604482 13 2.10222335293875 10 10 0 -5.76451209988215 LTS-016 chr20 40701496 42340187 1638692 * c(SGK2, PTPRT, L3MBTL1, MYBL2, IFT52, SRSF6) 0.263841717998697 24 0.199599581045711 1.5563182479159 858 1.003262672474 11 8 3 -6.74505079084324 LTS-016 chr20 42340188 42815190 475003 * c(GTSF1L, MYBL2, JPH2, TOX2) 0.376 1 NA 1.49830175612139 189 0.387326807900549 10 10 0 -5.76651644820243 LTS-016 chr20 42815191 59830007 17014817 * c(ADA, ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, CDH4, MIR4325, MIR3194, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, TRERNA1, SYCP2, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, SERINC3, UBE2C, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, PHACTR3, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, WFDC3, GCNT7, CBLN4, NA NA NA NA NA NA NA NA NA LTS-016 CTCFL, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, R3HDML, CSE1L, CSTF1, WFDC5, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, WFDC11, WFDC9, SNORD12C, TP53TG5, MOCS3, GNAS, WFDC10B, LINC00494, LINC01270, C20orf197, MIR646HG, HNF4A, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, FAM209B, SPINT4, SUMO1P1, MIR296, MC3R, MMP9, ZFAS1, NFATC2, SLC35C2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, PFDN4, PI3, PLTP, CTSA, PPP1R3D, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, PMEPA1, CASS4, EPPIN, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, PREX1, PTPN1, NCOA5, CDH26, KCNK15, SDC4, ELMO2, ZNF335, PCIF1, FAM217B, SEMG1, SEMG2, CDH22, SLC13A3, BMP7, SLPI, SNAI1, STAU1, STK4, AURKA, SNORD12, MIR645, TFAP2C, TNNC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, ZNF217, GDAP1L1, LINC01260, TTPAL, NPEPL1, PABPC1L, TUBB1, ZBP1, SLC2A10, NCOA3, PARD6B, RAE1, BCAS1, STX16, MATN4, DPM1, WISP2, SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, SPATA2) 0.382743625119625 235 0.0983308511249676 1.44791331956116 12654 0.486086559815071 9 5 4 -6.82955147947188 LTS-016 NA NA NA NA LTS-016 chr20 59830008 59908171 78164 * CDH4 NA 0 NA 1.808 1 NA NA NA NA NA LTS-016 chr20 59908172 62907151 2998980 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, KCNQ2, NA NA NA NA NA NA NA NA NA LTS-016 LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PCMTD2, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.3961141348711 146 0.110288212625462 1.5321587509662 5620 0.508671715743143 10 6 4 -6.73510188369595 LTS-016 NA NA NA NA LTS-016 chr20 62907152 62959313 52162 * c(LINC00266-1, PCMTD2) NA 0 NA 1.20641240652668 19 0.424484420670315 8 NA NA -5.76465178443928 LTS-016 chr21 9825764 9825966 203 * MIR3648-1 0.311 1 NA 0.819681345005594 4 0.977153348593079 5 5 0 -5.76441016505232 LTS-016 chr21 9825967 9908284 82318 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.349873105164509 6 0.0975241850346193 0.693067458605365 36 2.43555909620586 3 2 1 -6.73398441059698 LTS-016 chr21 9908285 9908326 42 * TEKT4P2 0.396 1 NA 3.003 1 NA NA NA NA NA LTS-016 chr21 9908327 11059877 1151551 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.369682032080629 18 0.0870020095928974 1.14393208961829 128 0.813812740847275 8 5 3 -6.74339532051985 LTS-016 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.51167896403766 5 0.269399331847724 10 NA NA -5.7646017794133 LTS-016 chr21 14745307 14756926 11620 * character(0) 0.379 1 NA 1.26617073737989 15 1.06751286375655 8 8 0 -5.76441088102306 LTS-016 chr21 14756927 17102824 2345898 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, USP25, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.355642867430682 23 0.119580574651538 1.31097974898392 600 0.396925373710843 8 5 3 -6.76660907012209 LTS-016 chr21 17102825 17115561 12737 * USP25 NA 0 NA 1.533 1 NA NA NA NA NA LTS-016 chr21 17115562 18885168 1769607 * c(LINC01549, USP25, MIR99AHG, MIRLET7C, MIR125B2, MIR99A) 0.35342457191769 6 0.0402761302345032 1.52474648872492 234 0.416021529940961 11 7 4 -6.84432214355597 LTS-016 chr21 18885169 18885546 378 * CXADR 0.423 1 NA 1.40278041340876 7 0.498030023956292 9 9 0 -5.7644101367552 LTS-016 chr21 18885547 19756040 870494 * c(BTG3, CHODL, CXADR, C21orf91-OT1, CHODL-AS1, C21orf91, TMPRSS15) 0.397993212846581 23 0.0491728418890615 1.48969356563306 476 0.445644970696541 10 6 4 -6.74878939262698 LTS-016 chr21 19756041 22370848 2614808 * c(LINC00320, NCAM2, TMPRSS15) 0 1 NA 1.41079967390914 25 0.614307409472923 9 9 0 -5.76462679783099 LTS-016 chr21 22370849 26965205 4594357 * c(RNU6-67P, MIR155HG, D21S2088E, LINC00515, LOC339622, LINC00317, MIR155, NCAM2, LINC00158, LINC00308, MRPL39) 0.273810649776009 12 0.133639270221947 1.49732508229214 248 0.556539555531174 10 7 3 -6.78213900711412 LTS-016 chr21 26965206 26969703 4498 * MRPL39 0.382 1 NA 1.45442814782871 15 0.285893303440953 9 9 0 -5.76445699193046 LTS-016 chr21 26969704 28210854 1241151 * c(CYYR1, GABPA, APP, ATP5J, MRPL39, JAM2, ADAMTS1) 0.358028500261612 12 0.118298031439345 1.48401486993362 576 0.44416971459038 9 6 3 -6.76086785287342 LTS-016 chr21 28210855 30244516 2033662 * c(MIR4759, ADAMTS5, LINC00161, LINC00314, N6AMT1, LINC00113, ADAMTS1) 0.014 1 NA 1.52378681708074 303 0.418297831609784 10 10 0 -5.76629373379235 LTS-016 chr21 30244517 30244877 361 * N6AMT1 0.036 1 NA 1.34201883254861 7 0.239048709919727 9 9 0 -5.76441704666168 LTS-016 chr21 30244878 30244947 70 * N6AMT1 NA 0 NA 0.971 1 NA NA NA NA NA LTS-016 chr21 30244948 40871895 10626948 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, RWDD2B, BRWD1-AS1, OLIG2, DSCR4, DSCR3, USP16, CCT8, LINC00310, OLIG1, KRTAP13-1, TCP10L, LCA5L, RCAN1, DYRK1A, LINC00189, ERG, ETS2, MORC3, CLDN14, KRTAP15-1, DSCR9, NA, DSCR10, LTN1, GART, CLDN17, LINC00307, KRTAP13-4, GRIK1, N6AMT1, DONSON, HUNK, NA NA NA NA NA NA NA NA NA LTS-016 HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, KRTAP26-1, LINC00114, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, SETD4, CLIC6, DNAJC28, C21orf62, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MRAP, C21orf59, MAP3K7CL, BACH1, SCAF4, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, URB1, CRYZL1, DOPEY2, KCNE2) 0.0323551746595212 149 0.02107532507567 0.914040487540457 8432 0.726741317814486 6 6 0 -6.76215821223396 LTS-016 NA NA NA NA LTS-016 chr21 40871896 45940524 5068629 * c(MIR3197, DSCAM-AS1, MIR4760, LRRC3-AS1, DSCAM-IT1, B3GALT5, WDR4, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, CRYAA, CSTB, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, MX1, MX2, NDUFV3, ZBTB21, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, SH3BGR, TMPRSS3, TFF1, NA NA NA NA NA NA NA NA NA LTS-016 TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, U2AF1, C21orf2, LRRC3, C21orf33, PDXK, RRP1, CBS, RSPH1, UMODL1, ABCG1) 0.0318719902910429 153 0.029743343703559 0.968192668405131 5225 0.492403631311771 6 6 0 -6.73945167376852 LTS-016 NA NA NA NA LTS-016 chr21 45940525 45970287 29763 * c(KRTAP10-1, TSPEAR) 0.36 1 NA 0.930399363005517 65 0.36020266530962 6 6 0 -5.76450753966824 LTS-016 chr21 45970288 46086827 116540 * c(KRTAP12-2, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, TSPEAR) 0.276681480287631 9 0.18502597415258 1.05340358563919 253 0.722853330697162 8 6 2 -6.74022320557538 LTS-016 chr21 46086828 46086901 74 * c(KRTAP12-2, TSPEAR) 0.034 1 NA 0.699768251041037 3 0.431054520913538 4 4 0 -5.76441099674397 LTS-016 chr21 46086902 46644473 557572 * c(ITGB2-AS1, ADARB1, KRTAP12-1, ITGB2, PICSAR, KRTAP10-12, TSPEAR, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, LINC01547, FAM207A) 0.140645801407881 11 0.152891464771582 0.964460798494494 546 0.471903280360914 7 6 1 -6.7745661392857 LTS-016 chr21 46644474 46683851 39378 * c(ADARB1, POFUT2) 0.017 1 NA 0.995007650521052 45 0.215758745740784 6 6 0 -5.76524385445977 LTS-016 chr21 46683852 47931467 1247616 * c(LOC100129027, DIP2A-IT1, COL18A1-AS2, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, LOC642852, SLC19A1, COL18A1, SPATC1L, MCM3AP) 0.0389006058931961 73 0.0235831134926907 0.973663540399795 1975 0.357654513628693 6 6 0 -6.75716100429881 LTS-016 chr21 47931468 48022558 91091 * c(DIP2A, S100B) 0.0454574264979102 11 0.0268070547024134 0.648383284999032 241 0.3281900748156 4 4 0 -6.74840938376268 LTS-016 chr21 48022559 48084993 62435 * c(PRMT2, S100B) NA 0 NA 0.590470916886575 93 0.188661128141497 4 NA NA -5.7769695751989 LTS-016 chr22 16157787 16157883 97 * character(0) 0.067 1 NA 1.351 1 NA NA NA NA NA LTS-016 chr22 16157884 20305282 4147399 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-016 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.0547450058824453 126 0.0523364281766125 0.728829032867096 4491 0.356384137101492 4 4 0 -6.9326163927189 LTS-016 NA NA NA NA LTS-016 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.668 1 NA NA NA NA NA LTS-016 chr22 20307254 20718542 411289 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0.0896662954709577 2 0.014142135623731 0.39662419905604 40 0.29199446341783 2 2 0 -6.75840160707005 LTS-016 chr22 20718543 22569430 1850888 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F) 0.0443161349749719 28 0.027308036106224 0.722851030036696 2403 0.252014061415199 4 4 0 -6.90390400089685 LTS-016 chr22 22569431 22569434 4 * character(0) NA 0 NA 0.887 1 NA NA NA NA NA LTS-016 chr22 22569435 22578547 9113 * character(0) NA 0 NA 0.334463792284552 40 0.281888866990758 2 NA NA -5.76483852317625 LTS-016 chr22 22578548 22707820 129273 * c(VPREB1, BMS1P20) 0.0573625084151893 9 0.0558609384493713 1.02342502888705 91 1.24871550950864 4 4 0 -6.75383209569959 LTS-016 chr22 22707821 22712261 4441 * character(0) 0.101 1 NA 0.76371338955839 11 0.170081317449785 5 5 0 -5.76469120944084 LTS-016 chr22 22712262 22786420 74159 * character(0) 0.151507939461258 5 0.10871660406764 0.94074135825883 89 0.827775893294748 8 7 1 -6.74060213438654 LTS-016 chr22 22786421 23247082 460662 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, LL22NC03-63E9.3, MIR650, GGTLC2) 0.110514917206205 14 0.132453039573683 0.681984916025884 485 0.398736742445341 4 4 0 -6.85887202613206 LTS-016 chr22 23247083 23262069 14987 * character(0) 0 1 NA 0.655775913441225 21 1.48689398219433 4 4 0 -5.76441021539154 LTS-016 chr22 23262070 24236819 974750 * c(ZDHHC8P1, C22orf15, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3, RAB36) 0.0511548205835518 27 0.0266453975008294 0.709450782918848 1124 0.273957835689287 4 4 0 -6.7773454558845 LTS-016 chr22 24236820 24237221 402 * c(MIF-AS1, MIF) 0.057 1 NA 0.636607664476874 9 0.263482658084192 4 4 0 -5.76441416961239 LTS-016 chr22 24237222 24325094 87873 * c(DDTL, DDT, MIF-AS1, MIF) 0.316630723167917 4 0.200925151901564 0.70708133663593 67 0.550327487716056 6 4 2 -6.75869403971645 LTS-016 chr22 24325095 24340696 15602 * GSTTP1 NA 0 NA 0.546 1 NA NA NA NA NA LTS-016 chr22 24340697 24384316 43620 * c(GSTTP1, GSTT1, LOC391322) 0.038 1 NA 0.149359785641875 64 0.248992353722562 1 1 0 -5.81786708699544 LTS-016 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.637 1 NA NA NA NA NA LTS-016 chr22 24400149 24579049 178901 * c(CABIN1, SUSD2, GSTTP2) 0.143100094559572 4 0.146854519848726 0.706056701561058 244 0.200050403274019 5 4 1 -6.95960606116146 LTS-016 chr22 24579050 24584970 5921 * SUSD2 0.031 1 NA 0.746828894906517 77 0.133393701872495 5 5 0 -5.76561206787565 LTS-016 chr22 24584971 42522546 17937576 * c(LOC100128531, LOC100130899, NDUFA6-AS1, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, NA NA NA NA NA NA NA NA NA LTS-016 SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, ZC3H7B, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, SLC16A8, SEC14L2, RBFOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, XRCC6, TMEM211, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TXN2, TMEM184B, GGA1, SEC14L3, GGT1, SNORD43, GGT5, INPP5J, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, POM121L9P, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, SDC4P, LRRC75B, LGALS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 LGALS2, LIF, LIMK2, LOC400927, SRRD, MIR33A, MB, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, UPB1, PMM1, POLR2F, MIEF1, TUG1, CCDC157, ZMAT5, SEPT3, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, XPNPEP3, BCRP3, ADORA2A-AS1, POM121L10P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 FAM227A, SLC5A1, SMTN, SLC5A4, GATSL3, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCN2, TEF, TIMP3, TOP1P2, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, LARGE1, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.0443484216471906 283 0.0268064263264251 0.700070450791405 20802 0.313005882175897 4 4 0 -7.13928234346285 LTS-016 NA NA NA NA LTS-016 chr22 42522547 42522552 6 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 1.186 1 NA NA NA NA NA LTS-016 chr22 42522553 42536425 13873 * c(NDUFA6-AS1, CYP2D7, CYP2D6) 0.0285810272892253 5 0.0173407035612746 1.52382311895381 68 0.4660283226348 7 7 0 -6.73990774567337 LTS-016 chr22 42536426 42536618 193 * CYP2D7 NA 0 NA 0.198 1 NA NA NA NA NA LTS-016 chr22 42536619 42899261 362643 * c(NFAM1, CYP2D7, OGFRP1, TCF20, SERHL) 0.0334625961770618 7 0.0342720210750902 0.754528530567679 353 0.420109979848182 5 5 0 -6.76482765282935 LTS-016 chr22 42899262 42905026 5765 * c(RRP7A, SERHL) NA 0 NA 1.106 1 NA NA NA NA NA LTS-016 chr22 42905027 42952604 47578 * c(SERHL2, RRP7A, RRP7BP, SERHL) 0.0978952971023849 9 0.154152341676812 1.32860357183481 106 0.497498932532141 11 10 1 -6.74199846109645 LTS-016 chr22 42952605 42956189 3585 * c(SERHL2, RRP7BP) NA 0 NA 0.838 1 NA NA NA NA NA LTS-016 chr22 42956190 43435812 479623 * c(PACSIN2, CYB5R3, SERHL2, TTLL1, ARFGAP3, RNU12, ATP5L2, A4GALT, POLDIP3, RRP7BP) 0.0424789082178632 26 0.018554078962693 0.742543086504872 506 0.435649817692985 5 5 0 -6.74942558722188 LTS-016 chr22 43435813 43466247 30435 * TTLL1 0.025 1 NA 0.663189218675384 47 0.187460710653867 4 4 0 -5.76443406043757 LTS-016 chr22 43466248 43539398 73151 * c(TTLL1, MCAT, BIK) NA 0 NA 0.691973105301484 71 0.169815975672377 4 NA NA -5.76810286695289 LTS-016 chr22 43539399 43555143 15745 * c(MCAT, TSPO) NA 0 NA 1.239 1 NA NA NA NA NA LTS-016 chr22 43555144 50051192 6496049 * c(LINC01310, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, PHF21B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, TTLL12, KIAA0930, ARHGAP8, TBC1D22A, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, SMC1B, LOC284933, PARVB, C22orf34, LINC00207, MIRLET7BHG, LINC00898, MIRLET7A3, MIRLET7B, LINC00229, GTSE1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, PRR5, NA NA NA NA NA NA NA NA NA LTS-016 TRMU, PARVG, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, SCUBE1, PNPLA3, LDOC1L, KIAA1644, CELSR1) 0.0257740101688658 94 0.0128660495962167 1.25490357568605 4173 0.501296374908337 8 8 0 -6.73405648430438 LTS-016 NA NA NA NA LTS-016 chr22 50051193 50166896 115704 * character(0) NA 0 NA 0.676 1 NA NA NA NA NA LTS-016 chr22 50166897 50454825 287929 * c(BRD1, IL17REL, PIM3, ALG12, CRELD2, NA, ZBED4) 0.0169764103556065 5 0.027509998182479 0.593154246865789 474 0.225020845265317 5 5 0 -7.4544339542798 LTS-016 chr22 50454826 50480108 25283 * character(0) 0.077 1 NA 0.711339012136092 43 0.298937366818163 4 4 0 -5.76541311646794 LTS-016 chr22 50480109 51206426 726318 * c(CHKB-AS1, RABL2B, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, RPL23AP82, NCAPH2, CHKB-CPT1B, ARSA, DENND6B, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, LMF2, PPP6R2, SCO2) 0.058965335544822 72 0.0305087791054298 0.613494942397448 2621 0.212432662683128 4 4 0 -6.83585802097832 LTS-016 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.483758216748458 51 0.106066841670528 3 NA NA -5.76660569356965 LTS-016 chrX 2699993 2715425 15433 * XG 0.416 1 NA 0.768371959087647 15 0.275828846172681 5 5 0 -5.76470430605719 LTS-016 chrX 2715426 11785501 9070076 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.382488566167363 36 0.108373820273325 0.722206041273185 2688 0.304742135473793 4 2 2 -7.24426675374597 LTS-016 chrX 11785502 11785670 169 * MSL3 NA 0 NA 0.515 1 NA NA NA NA NA LTS-016 chrX 11785671 16887736 5102066 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.40815643452047 35 0.0855018305371884 0.661021617215534 2938 0.166976630865254 4 2 2 -6.73768291995264 LTS-016 chrX 16887737 16887833 97 * RBBP7 NA 0 NA 0.887 1 NA NA NA NA NA LTS-016 chrX 16887834 18230715 1342882 * c(MIR4768, RAI2, BEND2, NHS, RBBP7, SCML1, REPS2) 0.275594025110094 4 0.202476336065889 0.728238250766084 630 0.233568455048583 4 3 1 -6.87820837922299 LTS-016 chrX 18230716 18265832 35117 * c(SCML2, BEND2) 0.371 1 NA 0.746049632464293 67 0.237351860057251 5 5 0 -5.76672260169094 LTS-016 chrX 18265833 21608694 3342862 * c(PHKA2-AS1, SCARNA9L, MIR23C, ADGRG2, SCML2, EIF1AX, CNKSR2, CXorf23, MAP7D2, SH3KBP1, MAP3K15, PDHA1, PHKA2, PPEF1, RPS6KA3, RS1, CDKL5, LOC729609) 0.0467432098710276 9 0.121666666666667 0.714113300787271 1831 0.22835703392393 4 4 0 -6.9743554830228 LTS-016 chrX 21608695 21861434 252740 * c(CNKSR2, SMPX, KLHL34, MBTPS2) 0.478 1 NA 0.769188773702946 205 0.159991019594939 5 5 0 -5.7780872177768 LTS-016 chrX 21861435 23416946 1555512 * c(PTCHD1-AS, PHEX-AS1, PTCHD1, ZNF645, DDX53, YY2, MBTPS2, PHEX, SMS) 0.427246829628285 11 0.0472022726725583 0.703819888321516 774 0.182485515135548 4 2 2 -6.89702504645834 LTS-016 chrX 23416947 23417038 92 * character(0) NA 0 NA 0.577 1 NA NA NA NA NA LTS-016 chrX 23417039 24577151 1160113 * c(SUPT20HL1, ZFX-AS1, PRDX4, SUPT20HL2, EIF2S3, ACOT9, CXorf58, PDK3, SAT1, ZFX, APOO, KLHL15, PCYT1B) 0.367349111471502 13 0.126585179591877 0.652054450899457 985 0.174242276540246 4 2 2 -6.81749671138281 LTS-016 chrX 24577152 24577580 429 * PCYT1B NA 0 NA 0.724 1 NA NA NA NA NA LTS-016 chrX 24577581 46845302 22267722 * c(LOC100132831, ATP6AP2, IL1RAPL1, FUNDC1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, CXorf38, DDX3X, FAM47B, NA, ARX, DMD, NR0B1, TAB3, HYPM, GK, GPR82, GPR34, LINC01281, CFAP47, MAGEB18, LANCL3, MPC1L, DCAF8L2, MAGEB5, LOC392452, ZNF674-AS1, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, OTC, FTHL17, POLA1, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NA NA NA NA NA NA NA NA NA LTS-016 NYX, RP2, RPGR, DUSP21, ZNF674, NA, SCARNA23, DYNLT3, TSPAN7, LINC01545, KDM6A, XK, CXorf36, CXorf21, EFHC2, PPP1R2P9, USP9X, TMEM47, SRPX, SLC9A7, CASK, MED14, SYTL5, PCYT1B, JADE3) 0.335315655470848 60 0.177660339771384 0.722945005505292 5948 0.221277148883424 4 3 1 -8.54457406194166 LTS-016 NA NA NA NA LTS-016 chrX 46845303 46857454 12152 * JADE3 NA 0 NA 1.366 1 NA NA NA NA NA LTS-016 chrX 46857455 53349823 6492369 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, ELK1, IQSEC2, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, NA NA NA NA NA NA NA NA NA LTS-016 GPR173, NDUFB11, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, UXT, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, RGN, BMP15, SLC38A5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 MAGED1, PAGE4, JADE3) 0.353418206311544 73 0.172494614214557 1.09513064427683 6044 0.332179598174051 7 4 3 -6.7912871451308 LTS-016 NA NA NA NA LTS-016 chrX 53349824 57932398 4582575 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, ZXDA, SMC1A, TSR2, FAM104B, PAGE5) 0.321956917436897 31 0.17650977005461 1.03165807086938 3179 0.29207523681855 7 5 2 -6.88798146729527 LTS-016 chrX 57932399 57937169 4771 * ZXDA NA 0 NA 0.94466615068209 87 0.223037046079983 6 NA NA -5.76441759268344 LTS-016 chrX 61999880 63005086 1005207 * c(SPIN4, ARHGEF9, LINC01278) 0.451 1 NA 1.1248514226547 227 0.308656180992367 7 7 0 -5.7666531342132 LTS-016 chrX 63005087 69626945 6621859 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, ASB12, AWAT1, AWAT2, EDA, EFNB1, ARHGEF9, KIF4A, FAM155B, YIPF6, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, MTMR8, ZC4H2, EDA2R, PJA1, LAS1L, FRMD8P1, STARD8, HEPH) 0.29100175764545 13 0.209299074446359 1.0612023664838 2637 0.314303993650998 7 5 2 -6.79558425125112 LTS-016 chrX 69626946 69637824 10879 * KIF4A NA 0 NA 1.537 1 NA NA NA NA NA LTS-016 chrX 69637825 101439808 31801984 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, DACH2, COX7B, MAP2K4P1, APOOL, HDX, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, NA NA NA NA NA NA NA NA NA LTS-016 PABPC1L2A, KIAA2022, BEX5, SATL1, IL2RG, ZCCHC13, FLJ44635, ARL13A, XKRX, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, NAP1L2, NAP1L3, NONO, MIR384, TBX22, RLIM, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, GDPD2, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, RPL36A, BCYRN1, RPS4X, TNMD, BRDTP1, SH3BGRL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, ARMCX2, MED12) 0.270019596008101 92 0.124116780313056 1.57516328900634 10380 0.987176745272286 10 7 3 -6.79397200883085 LTS-016 NA NA NA NA LTS-016 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.78 1 NA NA NA NA NA LTS-016 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.73141016770937 43 0.620959700919563 5 NA NA -5.76670494172479 LTS-016 chrX 101625091 101768564 143474 * character(0) NA 0 NA 1.64 1 NA NA NA NA NA LTS-016 chrX 101768565 139865525 38096961 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, LINC00629, ARMCX5-GPRASP2, MIR3978, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ADGRG4, ACTRT1, GPR119, RBMXL3, DOCK11, RAB40A, NA NA NA NA NA NA NA NA NA LTS-016 AMOT, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, H2BFWT, FAM122B, FAM122C, DCX, ZCCHC12, TSC22D3, AGTR2, ELF4, CT83, SLC25A43, NRK, INTS6L, ZNF449, TMEM31, F9, ACSL4, GPC4, FGF13, FHL1, SEPT6, ATP1B4, KCNE5, CT47A11, FAM127B, IL1RAPL2, SNORA69, SNORD61, BEX3, GPC3, RBMX, HTATSF1, GLUD2, RAB40AL, ATP11C, LINC00632, H2BFM, LOC286437, FIRRE, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, HPRT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IL13RA2, LOC389895, LAMP2, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, GLRA4, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, PAK3, ZDHHC9, TCEAL9, RAB9B, LUZP4, TFDP3, VGLL1, RBMX2, STK26, PLP1, PLS3, CT45A6, CT45A1, SASH3, WDR44, NUP62CL, TBC1D8B, CT55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TMEM255A, CXorf57, RBM41, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, TEX13A, MOSPD1, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RGAG1, LRCH2, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, ARMCX5, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, SNORA35, BRS3, SERPINA7, SNORD96B, TDGF1P3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, GPR101, USP26, TMEM164, PHF6, CUL4B, BEX2, IRS4, MIR503HG, TCEAL3, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, TCEAL8, AIFM1, CHRDL1, RIPPLY1, TCEAL1, MMGT1, RAB33A, ARHGEF6, CD40LG, MORF4L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 GPRASP1, AMMECR1) 0.247470329066887 145 0.13008565112399 1.56125445158352 16345 0.516808733987489 10 8 2 -6.78030163278577 LTS-016 NA NA NA NA LTS-016 chrX 139865526 153762378 13896853 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, NA NA NA NA NA NA NA NA NA LTS-016 G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-016 OPN1LW, RENBP, FAM3A, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.259248792605388 97 0.127661828773417 1.67910615754682 7576 0.746437219457135 11 8 3 -6.75290152644364 LTS-016 NA NA NA NA LTS-016 chrX 153762379 153762549 171 * G6PD NA 0 NA 1.523 1 NA NA NA NA NA LTS-016 chrX 153762550 154507173 744624 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, IKBKG) 0.258221026578053 16 0.106517897557171 1.54946284996274 1064 0.717311261426921 12 9 3 -6.75954268510018 LTS-016 chrX 154507174 154774986 267813 * c(CLIC2, TMLHE) NA 0 NA 1.46252412047639 105 2.19856165735059 9 NA NA -5.76447224961687 LTS-016 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 1.10880234357608 25 0.389130663573732 7 NA NA -5.76446397531961 LTS-016 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.897007134947872 19 0.347445674999738 6 NA NA -5.91602549922658 LTS-016 chr1 65893 721757 655865 * c(LOC100288069, LOC729737, OR4F5) 0.274 1 NA 1.98416600048365 12 0.891141045871171 7 7 0 -5.76470163597557 LTS-017 chr1 721758 1593285 871528 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-017 CDK11B) 0.437663256015499 78 0.0877986525899082 1.25543888390756 2937 0.299980491385589 4 2 2 -6.74616073043131 LTS-017 NA NA NA NA LTS-017 chr1 1593286 1593364 79 * c(SLC35E2B, CDK11B) NA 0 NA 0.42 1 NA NA NA NA NA LTS-017 chr1 1593365 1639675 46311 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.368295804468668 10 0.0834476549167867 0.951518127922338 194 0.41983351959818 3 2 1 -6.73314184539132 LTS-017 chr1 1639676 1639687 12 * c(CDK11A, SLC35E2B, CDK11B) 0.268 1 NA 5.818 1 NA NA NA NA NA LTS-017 chr1 1639688 2268330 628643 * c(CALML6, FAAP20, GABRD, GNB1, TMEM52, PRKCZ, SKI, NADK, CDK11A, SLC35E2B, MORN1, CFAP74, CDK11B, SLC35E2) 0.419552772291911 39 0.0686190662156888 1.29263812666361 1053 0.865496952998607 5 3 2 -6.75250740421999 LTS-017 chr1 2268331 2286540 18210 * c(LOC100129534, MORN1) NA 0 NA 0.803 1 NA NA NA NA NA LTS-017 chr1 2286541 2310649 24109 * MORN1 0.108 1 NA 0.792568657615781 41 0.161993981369679 2 2 0 -5.77209880709168 LTS-017 chr1 2310650 6652358 4341709 * c(NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, DFFB, MEGF6, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, TNFRSF25, TNFRSF14, PLCH2, NA NA NA NA NA NA NA NA NA LTS-017 CEP104, KLHL21) 0.443155580843828 71 0.0777438708628561 1.27006532455315 3850 0.415294112730764 4 2 2 -6.78757651621593 LTS-017 NA NA NA NA LTS-017 chr1 6652359 12640461 5988103 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, CORT, C1orf127, PHF13, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, DNAJC11, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NA NA NA NA NA NA NA NA NA LTS-017 NMNAT1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, THAP3, DHRS3, VAMP3, FBXO44, TNFRSF8, H6PD, KLHL21, MFN2) 0.445077604250185 124 0.0712471987017237 1.21894776122936 7093 0.288265890918086 4 2 2 -6.75231426510689 LTS-017 NA NA NA NA LTS-017 chr1 12640462 12838099 197638 * c(AADACL3, AADACL4, PRAMEF12, DHRS3, C1orf158) NA 0 NA 1.1650025634855 243 0.207951095525181 4 NA NA -5.76644540425473 LTS-017 chr1 12838100 12853262 15163 * PRAMEF1 NA 0 NA 1.508 1 NA NA NA NA NA LTS-017 chr1 12853263 12854544 1282 * PRAMEF1 0.339 1 NA 2.19714972325377 3 1.5745637491064 8 8 0 -5.76441014741197 LTS-017 chr1 12854545 12921110 66566 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1, PRAMEF2) 0.292530061996114 15 0.127162325957247 1.8628920972011 72 0.84997066770249 7 5 2 -6.74320477161687 LTS-017 chr1 12921111 13183511 262401 * c(PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, PRAMEF2, PRAMEF22) 0.488 1 NA 1.29602025811766 11 0.368869846472118 4 4 0 -5.7716826170566 LTS-017 chr1 13183512 13183533 22 * HNRNPCL2 0.410995902988462 3 0.00200000000000003 2.48550599041494 3 0.0902902726396 17 10 7 -6.78656767953874 LTS-017 chr1 13183534 13183561 28 * HNRNPCL2 NA 0 NA 1.246 1 NA NA NA NA NA LTS-017 chr1 13183562 16113037 2929476 * c(PDPN, CTRC, FHAD1, LRRC38, TMEM51-AS1, PLEKHM2, KAZN, DNAJC16, SLC25A34, PRAMEF9, TMEM82, PRAMEF17, PRAMEF13, NA, HNRNPCL2, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, NA, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.365299836946581 91 0.0671181743527737 0.9568657429312 1833 0.240594534273562 3 2 1 -6.73657434180692 LTS-017 chr1 16113038 16203146 90109 * c(SPEN, UQCRHL, FBLIM1, FLJ37453) NA 0 NA 1.07652526546079 57 0.26978825587397 4 NA NA -5.77278119178774 LTS-017 chr1 16203147 16235763 32617 * SPEN NA 0 NA 0.334 1 NA NA NA NA NA LTS-017 chr1 16235764 16272409 36646 * c(SPEN, ZBTB17) 0.299 1 NA 0.464796442555301 315 0.0892081834244471 1 1 0 -5.76505547284691 LTS-017 chr1 16272410 16575024 302615 * c(CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, HSPB7, FAM131C, ZBTB17, RSG1) 0.271651312560533 40 0.0789821101132954 0.462708187138912 765 0.118646402239299 1 1 0 -6.89095489290908 LTS-017 chr1 16575025 16722416 147392 * c(SZRD1, SPATA21, FBXO42) 0.333 1 NA 0.438913084785393 165 0.0961578955267637 1 1 0 -5.78124551471522 LTS-017 chr1 16722417 16727386 4970 * c(SZRD1, SPATA21) 0.250638122389248 2 0.0410121933088197 0.514245266555399 61 0.123012232276378 1 1 0 -6.8730102730801 LTS-017 chr1 16727387 16730135 2749 * SPATA21 NA 0 NA 0.84 1 NA NA NA NA NA LTS-017 chr1 16730136 17012093 281958 * c(MST1P2, CROCCP3, SPATA21, NBPF1, NECAP2, CROCCP2) 0.3565529030617 19 0.0922628459811316 0.994842822179143 333 0.242060874133064 3 2 1 -6.75064603679723 LTS-017 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.328 1 NA NA NA NA NA LTS-017 chr1 17017583 17084530 66948 * c(MST1L, ESPNP, CROCC) 0.400141496087982 27 0.0745006357647016 1.21633370892885 151 0.422662452747429 5 3 2 -6.74869951603071 LTS-017 chr1 17084531 25599162 8514632 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, MST1L, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, ATP13A2, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, NA NA NA NA NA NA NA NA NA LTS-017 PADI1, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, NCMAP, LDLRAD2, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RHD, RPL11, SDHB, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CAPZB, USP48, NBPF3, IGSF21, AKR7A2, RUNX3, ALDH4A1, EIF4G3, STPG1, CROCC, CDA, ZBTB40, CDC42) 0.366946428287541 261 0.0752882438241168 0.985178201843578 10378 0.347095515465651 3 2 1 -6.78701061280588 LTS-017 NA NA NA NA LTS-017 chr1 25599163 25656954 57792 * c(RSRP1, RHD) 0.315809597283605 2 0.051618795026618 1.95510616193255 75 0.49487712625468 7 5 2 -6.74335749135852 LTS-017 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.283 1 NA NA NA NA NA LTS-017 chr1 25666924 26901319 1234396 * c(MIR1976, MIR3917, CNKSR1, CD52, PDIK1L, PAQR7, EXTL1, TMEM50A, ZNF683, LDLRAP1, HMGN2, CATSPER4, STMN1, PAFAH2, ZNF593, AIM1L, TMEM57, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, LOC646471, CEP85, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, SH3BGRL3, TRIM63, UBXN11) 0.369861152806625 80 0.0615917538763885 0.970121272361695 2282 0.244555575171717 3 2 1 -6.73811614802364 LTS-017 chr1 26901320 27057621 156302 * c(RPS6KA1, ARID1A) 0.416 1 NA 0.897902143014678 45 0.178495338478588 3 3 0 -5.77400577602441 LTS-017 chr1 27057622 27059377 1756 * ARID1A NA 0 NA 1.02562442313619 15 0.0804080664041684 3 NA NA -5.76534708621016 LTS-017 chr1 27059378 27087302 27925 * ARID1A NA 0 NA 0.723 1 NA NA NA NA NA LTS-017 chr1 27087303 32831543 5744241 * c(FAM229A, MATN1-AS1, MIR4254, MIR4420, PTPRU, WASF2, KHDRBS1, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, DCDC2B, LINC01225, FAM76A, TXLNA, EPB41, EYA3, FABP3, FGR, DNAJC8, WDTC1, KPNA6, STX12, IFI6, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, MTMR9LP, SERINC2, TRNP1, CD164L2, LCK, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, BSDC1, PPP1R8, XKR8, TMEM39B, NA NA NA NA NA NA NA NA NA LTS-017 PEF1, PIGV, IQCC, TMEM234, PTAFR, ADGRB2, RPA2, GPATCH3, TINAGL1, SRSF4, ACTG1P20, MARCKSL1, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, LAPTM5, CCDC28B, NKAIN1, PTP4A2, TSSK3, ARID1A, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, FAM167B, SYTL1, SNHG12, FCN3, EIF3I, MAP3K6, SPOCD1, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.455428286297988 108 0.0418257234103889 0.7201516518889 6556 0.174615726777921 2 1 1 -6.88699289037939 LTS-017 NA NA NA NA LTS-017 chr1 32831544 32859689 28146 * BSDC1 NA 0 NA 0.717355183817533 90 0.150055229532704 2 NA NA -5.76466604731743 LTS-017 chr1 32859690 33087022 227333 * c(ZBTB8OS, BSDC1, ZBTB8A, ZBTB8B) 0 1 NA 0.948003855484283 151 0.334011242755354 3 3 0 -5.76442002654931 LTS-017 chr1 33087023 43032196 9945174 * c(NFYC-AS1, MIR4255, MIR3659, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, CAP1, SF3A3, SMIM12, AZIN2, TMEM54, CSMD2, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, CSF3R, ZNF362, MANEAL, CTPS1, CITED4, EDN2, PHC2, AGO3, AGO4, SLFNL1, AK2, FHL3, FOXJ3, SCMH1, NCDN, MACF1, FNDC5, MYCBP, HEYL, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, NA NA NA NA NA NA NA NA NA LTS-017 EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HPCA, LINC01343, ZBTB8OS, TFAP2E, ZFP69, BMP8A, INPP5B, CSMD2-AS1, MIR30C1, MIR30E, MTF1, MYCL, NDUFS5, NFYC, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, TRIM62, PPT1, MAP7D1, PSMB2, KIAA1522, DLGAP3, HIVEP3, RBBP4, RLF, CLSPN, OXCT2, RRAGC, SFPQ, KIAA0754, SMAP2, S100PBP, MEAF6, EXO5, MRPS15, ZFP69B, LOC653160, BMP8B, SNORA55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LINC01137, PPIEL, CCDC30, ZSCAN20, DNALI1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, SYNC, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, C1orf94, YARS, PABPC4, KCNQ4, ZMYM4, ZMYM6, RIMS3, THRAP3) 0.371843643469468 152 0.0793933118699292 0.94956787540303 10911 0.237020167922591 3 2 1 -6.73373340100316 LTS-017 NA NA NA NA LTS-017 chr1 43032197 43042693 10497 * CCDC30 NA 0 NA 1.025 1 NA NA NA NA NA LTS-017 chr1 43042694 47333706 4291013 * c(LOC100129924, EFCAB14-AS1, KDM4A-AS1, MKNK1-AS1, MIR5584, TSPAN1, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CYP4B1, CYP4Z2P, DPH2, FAAH, MAST2, SZT2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, IPP, SVBP, TEX38, NSUN4, LINC01144, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, YBX1, NA NA NA NA NA NA NA NA NA LTS-017 PRDX1, ZNF691, TMEM69, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, P3H1, ATPAF1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, HECTD3, HYI, RAD54L, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14, CDC20) 0.362232224723442 107 0.0645302368847617 0.993757860316021 6489 0.225128485564989 3 2 1 -6.8385273648122 LTS-017 NA NA NA NA LTS-017 chr1 47333707 47348618 14912 * CYP4Z2P NA 0 NA 1.472 1 NA NA NA NA NA LTS-017 chr1 47348619 47427393 78775 * c(CYP4A11, CYP4Z2P, CYP4X1) 0.224477767543643 5 0.0576046873092806 1.50476585100201 92 0.715451048596874 10 8 2 -6.76358591872293 LTS-017 chr1 47427394 47489168 61775 * CYP4X1 NA 0 NA 0.671 1 NA NA NA NA NA LTS-017 chr1 47489169 66096234 18607066 * c(LINC01135, MIR761, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, LINC00853, PDZK1IP1, PATJ, CDKN2C, FAF1, KTI12, MYSM1, OSBPL9, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, AK4, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, USP24, ITGB3BP, NA NA NA NA NA NA NA NA NA LTS-017 SSBP3, PCSK9, PARS2, ACOT11, CYP4X1, RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, FAM151A, FAM159A, JAK1, JUN, MROH7, TRABD2B, LDLRAD1, SKINT1L, LEPR, MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, NRDC, ROR1, ORC1, TXNDC12, MRPL37, HOOK1, HSPB11, CMPK1, PGM1, YIPF1, SPATA6, L1TD1, LEPROT, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, PRKAA2, NDC1, CACHD1, RAB3B, CYB5RL, SCP2, DMRTB1, DMRTA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 STIL, SLC1A7, COA7, TAL1, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, BEND5, ZYG11B, TM2D1, EFCAB7, FOXD2-AS1, AGBL4, ATG4C, PRPF38A, DOCK7, PLPP3, BTF3L4, ZFYVE9, TMEM59, DNAJC6) 0.359806500583733 233 0.0685571186032027 0.97329787608171 11349 0.275350731259117 3 2 1 -6.82499373190924 LTS-017 NA NA NA NA LTS-017 chr1 66096235 66098826 2592 * LEPR NA 0 NA 0.903 1 NA NA NA NA NA LTS-017 chr1 66098827 74492348 8393522 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, NEGR1-IT1, ZRANB2-AS2, HHLA3, LRRIQ3, CTH, IL23R, GADD45A, TCTEX1D1, SLC35D1, NEGR1, SERBP1, IL12RB2, LEPR, C1orf141, MIR186, PDE4B, PIN1P1, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, ZRANB2) 0.359918627397402 47 0.0880131602303203 0.916960017384953 3140 0.263501177207954 3 2 1 -6.83330222149307 LTS-017 chr1 74492349 86488232 11995884 * c(PIGK, FPGT-TNNI3K, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, SLC44A5, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, ACADM, CYR61, MIGA1, UOX, LHX8, LINC01555, MSH4, TNNI3K, ZNHIT6, GIPC2, MCOLN3, PRKACB, PTGFR, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, RPF1, NA NA NA NA NA NA NA NA NA LTS-017 ST6GALNAC5, SYDE2, FPGT, FUBP1, BCL10, NEXN) 0.363542661851805 130 0.0699100644678136 0.966078133047783 5197 0.281230725777444 3 2 1 -6.76061800562164 LTS-017 NA NA NA NA LTS-017 chr1 86488233 86497669 9437 * COL24A1 NA 0 NA 0.836322552320194 13 0.19894078490203 3 NA NA -5.76675987822142 LTS-017 chr1 86497670 86499475 1806 * COL24A1 NA 0 NA 1.3 1 NA NA NA NA NA LTS-017 chr1 86499476 86590948 91473 * COL24A1 0.473 1 NA 1.20359171967687 55 0.217717176684728 4 4 0 -5.76444313663458 LTS-017 chr1 86590949 89445318 2854370 * c(LINC01364, CLCA1, CLCA4, COL24A1, GTF2B, LINC01140, RBMXL1, SH3GLB1, PKN2, KYAT3, ODF2L, LMO4, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.447448137456937 22 0.0383069173051019 1.21327039121597 1204 0.287172264952103 4 2 2 -6.7700944014865 LTS-017 chr1 89445319 94471134 5025816 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, ABCA4, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, GCLM, ZNF326, BTBD8, DNTTIP2, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.461632875703131 47 0.0261861443049854 1.12144482684553 3599 0.280384262493699 4 2 2 -7.3315244728434 LTS-017 chr1 94471135 94473103 1969 * ABCA4 NA 0 NA 1.631 1 NA NA NA NA NA LTS-017 chr1 94473104 94568796 95693 * ABCA4 0.291403150771448 3 0.253279160874584 1.5544720829641 214 0.499480860172221 7 5 2 -6.74703494516316 LTS-017 chr1 94568797 94574092 5296 * ABCA4 NA 0 NA 1.002 1 NA NA NA NA NA LTS-017 chr1 94574093 94983857 409765 * c(ABCA4, ABCD3, ARHGAP29) 0.423373280258695 8 0.0689429111656884 1.24073850357876 326 0.275194121026025 4 2 2 -6.76550188089276 LTS-017 chr1 94983858 95211557 227700 * c(F3, ABCD3) 0.385073249720388 3 0.02 1.63764838736985 63 0.534526047775156 8 5 3 -6.77234425377664 LTS-017 chr1 95211558 109159065 13947508 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, CNN3, SLC44A3, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729970, LOC729987, NA NA NA NA NA NA NA NA NA LTS-017 VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.446964259462759 66 0.0754717085263 1.15896665492257 3630 0.317706536544996 4 2 2 -6.82678225099846 LTS-017 NA NA NA NA LTS-017 chr1 109159066 109159084 19 * FAM102B NA 0 NA 1.191 1 NA NA NA NA NA LTS-017 chr1 109159085 110881555 1722471 * c(AHCYL1, HENMT1, ATXN7L2, C1orf194, CSF1, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, SCARNA2, STXBP3, TAF13, EPS8L3, GPR61, PSRC1, STRIP1) 0.458733891201096 55 0.0301532226307046 1.22569929410984 3561 0.417541331109834 4 2 2 -6.99772075734486 LTS-017 chr1 110881556 120484421 9602866 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, LAMTOR5, AP4B1, PHTF1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, MAB21L3, HSD3BP4, DRAM2, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, SPAG17, HIPK1, AKR7A2P1, MAGI3, PTPN22, PHGDH, AMPD1, CHIA, FAM19A3, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, NBPF7, KCNA2, KCNA3, KCNA10, KCND3, RHOC, MOV10, LOC440600, NA NA NA NA NA NA NA NA NA LTS-017 BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, OLFML3, PTGFRN, RAP1A, CYMP, LOC643355, LOC643441, LINC00622, RBM15, DCLRE1B, SLC16A1, SYCP1, TBX15, TSHB, WNT2B, CSDE1, WDR77, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, REG4, PROK1, CASQ2, TTF2, ATP1A1-AS1, ZNF697, SLC16A4, CD2, CD101, CD53, CD58, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LRIG2) 0.449960477675758 195 0.0618431094172578 1.16500262844941 8387 0.401510436127539 4 2 2 -6.78038014788424 LTS-017 NA NA NA NA LTS-017 chr1 120484422 120529742 45321 * NOTCH2 NA 0 NA 1.22812143532801 81 0.197430091549851 4 NA NA -5.76486423314858 LTS-017 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.855 1 NA NA NA NA NA LTS-017 chr1 120534071 120536008 1938 * NOTCH2 0.318 1 NA 0.753503815572451 18 0.113993019508793 2 2 0 -5.76481925058436 LTS-017 chr1 120536009 120926090 390082 * c(HIST2H2BA, NOTCH2, FAM72B) 0.326885917296846 11 0.0305950085055478 1.01355379385275 144 1.6405318887516 10 7 3 -6.89293161500565 LTS-017 chr1 120926091 120926148 58 * FCGR1B NA 0 NA 1.337 1 NA NA NA NA NA LTS-017 chr1 120926149 121307507 381359 * c(SRGAP2D, FCGR1B, EMBP1) 0.298935708446224 2 0.174655374953077 1.25874960973934 56 0.325471933076846 4 3 1 -6.73891670074687 LTS-017 chr1 121307508 121313547 6040 * EMBP1 NA 0 NA 1.08257691576922 29 0.327903870480149 4 NA NA -5.76475135020343 LTS-017 chr1 143912360 144013853 101494 * FAM72D 0.26 1 NA 1.09881469229835 5 0.780088648808583 4 4 0 -5.76514567480172 LTS-017 chr1 144013854 144680028 666175 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.273 1 NA 0.404061353723834 44 0.534630434388286 1 1 0 -5.78609384404288 LTS-017 chr1 144680029 144851495 171467 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.188 1 NA NA NA NA NA LTS-017 chr1 144851496 145014103 162608 * c(NBPF20, LOC653513, PDE4DIP) 0.42889423795475 45 0.0580959238125737 1.10895464629534 422 0.266174604305633 4 2 2 -6.75707395531251 LTS-017 chr1 145014104 145014263 160 * c(NBPF20, LOC653513, PDE4DIP) 0.366 1 NA 0.966095788286672 3 0.0773067483039697 3 3 0 -5.76441425186851 LTS-017 chr1 145014264 145136562 122299 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.294817513638119 19 0.100864189856071 1.06353125157183 115 0.268542282968961 4 3 1 -6.7472849360501 LTS-017 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.644 1 NA NA NA NA NA LTS-017 chr1 145136925 145138351 1427 * NBPF20 NA 0 NA 0.639958156145972 40 0.301231898062367 2 NA NA -5.76449648153699 LTS-017 chr1 145138352 145284883 146532 * c(NBPF10, NBPF20, NOTCH2NL) 0.310969538532929 12 0.0951362659079548 1.09009541147626 136 1.57166235125448 7 5 2 -6.74500939273408 LTS-017 chr1 145284884 145285310 427 * c(NBPF10, NBPF20, NOTCH2NL) 0.416 1 NA 1.11623648106689 9 0.257248150840995 4 4 0 -5.76442906498235 LTS-017 chr1 145285311 151023163 5737853 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, MIR5087, FALEC, SF3B4, PIAS3, POLR3C, TXNIP, MTMR11, CD160, VPS45, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, CERS2, HIST2H2AB, HIST2H2BC, NOTCH2NL, LINC01138, LOC388692, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, NA NA NA NA NA NA NA NA NA LTS-017 MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, OTUD7B, LINC00869, PRUNE1, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.433784007355645 71 0.0791283398346632 1.1780511479198 5038 0.29528267195922 4 2 2 -6.74529131704512 LTS-017 NA NA NA NA LTS-017 chr1 151023164 151091181 68018 * c(MLLT11, GABPB2, C1orf56, CDC42SE1) 0.465803697200332 3 0.0141774468787578 1.21072359720601 133 0.170103316547021 4 2 2 -8.40828975806761 LTS-017 chr1 151091182 151092360 1179 * character(0) 0 1 NA 1.14790385211467 15 0.255845898559121 4 4 0 -5.76442921280436 LTS-017 chr1 151092361 151655751 563391 * c(TNFAIP8L2-SCNM1, SEMA6C, POGZ, TMOD4, LYSMD1, PI4KB, PSMB4, PSMD4, CGN, ZNF687, RFX5, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, SNX27, PIP5K1A, SELENBP1) 0.329681855374774 12 0.192580305956825 1.21597798491805 1455 0.330018133707596 4 3 1 -6.75419594115004 LTS-017 chr1 151655752 151668295 12544 * SNX27 0.446 1 NA 1.32988397809538 55 0.258430725206272 5 5 0 -5.76516941614577 LTS-017 chr1 151668296 153234602 1566307 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, OAZ3, CRCT1, PRR9, RORC, S100A10, S100A11, MRPL9, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, NA NA NA NA NA NA NA NA NA LTS-017 TCHH, SNX27, LCE3D) 0.443002874673101 84 0.0671881867468138 1.25975497610523 2025 0.40543900077922 4 2 2 -6.75065939823597 LTS-017 NA NA NA NA LTS-017 chr1 153234603 153509890 275288 * c(PGLYRP3, S100A7A, PGLYRP4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2) 0.482 1 NA 1.23964408205037 291 0.254227084837101 4 4 0 -5.76751288806035 LTS-017 chr1 153509891 153905862 395972 * c(SLC27A3, S100A16, SNAPIN, CHTOP, ILF2, NPR1, S100A14, GATAD2B, S100A1, S100A2, S100A3, S100A4, S100A5, S100A13, INTS3, DENND4B) 0.453011373627704 21 0.0226757684807037 1.22969777239462 1020 0.256865961781551 4 2 2 -6.97526424426941 LTS-017 chr1 153905863 153905992 130 * DENND4B NA 0 NA 1.621 1 NA NA NA NA NA LTS-017 chr1 153905993 153927692 21700 * c(CRTC2, DENND4B) 0.359 1 NA 1.54069889588109 192 0.3674116090529 5 5 0 -5.76481825972958 LTS-017 chr1 153927693 153930814 3122 * CRTC2 NA 0 NA 1.271 1 NA NA NA NA NA LTS-017 chr1 153930815 157718780 3787966 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, PMF1, GLMP, CHRNB2, FCRL3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, CREB3L4, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, RUSC1, C1orf43, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, CYCSP52, INSRR, PEAR1, NA NA NA NA NA NA NA NA NA LTS-017 KCNN3, C1orf189, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, MTX1, MUC1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, HCN3, RAB13, RIT1, HAPLN2, RPS27, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ISG20L2, FCRL5, FCRL4, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, ARHGEF11, UBAP2L) 0.457300162079507 149 0.0513543880549789 1.22559474565736 9129 0.269236036539459 4 2 2 -6.83050593015526 LTS-017 NA NA NA NA LTS-017 chr1 157718781 157719458 678 * FCRL2 0 1 NA 1.60941769900463 5 1.20675730782954 6 6 0 -5.76441080271506 LTS-017 chr1 157719459 158224059 504601 * c(FCRL1, KIRREL, LOC646268, FCRL2, CD1A, CD1D, CD5L) 0.27198354208863 8 0.227161364924332 1.27073415621407 462 0.467721941998258 4 3 1 -6.74362751924874 LTS-017 chr1 158224060 158224282 223 * CD1A 0.453 1 NA 1.36806310512444 5 1.00768114996759 5 5 0 -5.76441051415179 LTS-017 chr1 158224283 161196753 2972471 * c(TSTD1, CADM3-AS1, LINC01133, SLAMF6, KLHDC9, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, OR10R2, FCRL6, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LY9, MNDA, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, NA NA NA NA NA NA NA NA NA LTS-017 ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SLAMF1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, CD1A, CD1B, CD1C, CD1E, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48) 0.437539818485451 83 0.11399989431405 1.21002516607289 5250 0.484001565923969 4 2 2 -6.733929656248 LTS-017 NA NA NA NA LTS-017 chr1 161196754 161196904 151 * TOMM40L NA 0 NA 1.137 1 NA NA NA NA NA LTS-017 chr1 161196905 167298490 6101586 * c(MIR921, MIR3658, LOC100505795, MIR4654, MIR5187, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, ATF6, CFAP126, OLFML2B, C1orf111, HSPA6, HSPA7, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, MPZ, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, POGK, RGS4, RXRG, SDHC, RPL31P11, PCP4L1, UAP1, MIR556, UCK2, NUF2, TOMM40L, FCRLA, RGS5, NA NA NA NA NA NA NA NA NA LTS-017 MAEL, FCGR2C, DUSP27, NOS1AP, NR1I3) 0.416971021349605 123 0.105544414745356 1.17343526199398 3533 0.408614274248276 4 2 2 -6.7664265508372 LTS-017 NA NA NA NA LTS-017 chr1 167298491 167387710 89220 * POU2F1 0.464 1 NA 1.16163693155408 165 0.472687375064592 4 4 0 -5.76462778858928 LTS-017 chr1 167387711 176659669 9271959 * c(MIR1295A, MIR3119-1, MIR3120, MIR3119-2, LOC100505918, LOC100506023, GAS5-AS1, DNM3OS, MIR1295B, SLC19A2, RC3H1, METTL11B, DPT, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TIPRL, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, LINC01142, NME7, ANKRD45, FASLG, SFT2D2, FMO6P, SERPINC1, MYOC, ATP1B1, SUCO, METTL13, PIGC, PRRX1, POU2F1, DARS2, C1orf112, ADCY10, NA NA NA NA NA NA NA NA NA LTS-017 DCAF6, SCYL3, CCDC181, GAS5, PAPPA2, SNORD74, XCL1, TNN, MRPS14, SELE, SELL, SELP, RFWD2, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR557, TNR, TOP1P1, TNFSF4, LOC730159, LINC00626, MROH9, ZBTB37, ANKRD36BP1, BLZF1, VAMP4, CREG1, TNFSF18, MPZL1, TBX19, CENPL, CD247, RCSD1, METTL18, GORAB, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.452573599411879 145 0.0410551913359588 1.15504532366003 6361 0.343559132166379 4 2 2 -6.8637185469197 LTS-017 NA NA NA NA LTS-017 chr1 176659670 176659748 79 * PAPPA2 NA 0 NA 1.545 1 NA NA NA NA NA LTS-017 chr1 176659749 183867038 7207290 * c(GM140, RASAL2-AS1, MIR3121, LHX4-AS1, MIR4424, ARPC5, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, C1orf220, APOBEC4, ASTN1, NCF2, IER5, RALGPS2, MIR488, QSOX1, KIAA1614, BRINP2, RGS16, RNASEL, PAPPA2, TOR3A, SOAT1, LOC730102, CACNA1E, NPHS2, NPL, SHCBP1L, TEX35, ACBD6, RGS8, SEC16B, NA NA NA NA NA NA NA NA NA LTS-017 LHX4, ANGPTL1, XPR1, RASAL2, CEP350, SMG7, FAM20B) 0.44680633922175 151 0.0822603013269033 1.21790977233673 6433 0.359681438815174 4 2 2 -6.74913702570749 LTS-017 NA NA NA NA LTS-017 chr1 183867039 183869191 2153 * RGL1 NA 0 NA 1.15 1 NA NA NA NA NA LTS-017 chr1 183869192 187610910 3741719 * c(GS1-279B7.1, MIR548F1, RNU6-72P, PRG4, IVNS1ABP, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, PDC, PLA2G4A, SWT1, C1orf27, PTGS2, RNF2, TPR, EDEM3, C1orf21, TRMT1L, HMCN1) 0.462166567019412 33 0.0289082928229841 1.15626427872339 2618 0.266738024712693 4 2 2 -7.15164858014054 LTS-017 chr1 190066764 192127689 2060926 * c(BRINP3, LOC440704, RGS18) NA 0 NA 0.700139300816744 69 0.131548382666216 2 NA NA -5.76682881024239 LTS-017 chr1 192127690 192127769 80 * RGS18 NA 0 NA 0.995 1 NA NA NA NA NA LTS-017 chr1 192127770 200342286 8214517 * c(MIR181A1HG, MIR1278, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFH, CFHR1, CFHR2, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, GLRX2, UCHL5, LINC00862, LHX9, PTPRC, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, CFHR5, B3GALT2) 0.452031475172707 42 0.0447450968641235 1.0781253591004 2886 0.294455416284539 4 2 2 -7.35494826131421 LTS-017 chr1 200342287 205027416 4685130 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, ZNF281, PHLDA3, TMEM9, LMOD1, OPTC, LINC00303, GPR25, UBE2T, RPS10P7, KISS1, LAD1, NA, MDM4, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PIK3C2B, PKP1, LAX1, ETNK2, LINC00862, PRELP, IPO9, C1orf106, PTPN7, NA NA NA NA NA NA NA NA NA LTS-017 RABIF, KLHL12, LGR6, REN, RNPEP, MGAT4EP, ASCL5, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, LINC01136, CACNA1S, BTG2, DDX59, LINC00260, PPP1R15B, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A, KIF14) 0.45261176869524 150 0.0567782014603653 1.24884406851128 7233 0.30742974966737 4 2 2 -6.82306350502777 LTS-017 NA NA NA NA LTS-017 chr1 205027417 211746226 6718810 * c(MIR4260, IL24, SLC26A9, CR1, CR1L, CR2, C1orf74, LOC148696, MFSD4A, PM20D1, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, SYT14, DSTYK, DIEXF, LEMD1-AS1, LOC284578, LOC284581, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, TMEM81, LAMB3, MIR205, MIR29C, CD46, C1orf186, MIR135B, G0S2, IL20, CDK18, PFKFB2, PIGR, PLXNA2, KLHDC8A, AVPR1B, YOD1, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, RBBP5, MIR205HG, NUCKS1, NA NA NA NA NA NA NA NA NA LTS-017 SRGAP2C, CNTN2, TRAF5, C4BPA, C4BPB, FAM72A, C1orf116, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00467, SLC45A3, RAB29, FCMR, MAPKAPK2, LEMD1, CD34, IKBKE, TMCC2) 0.43589453177362 155 0.0645960818577251 1.10441004498135 6143 0.319514181165029 4 2 2 -6.98042420186837 LTS-017 NA NA NA NA LTS-017 chr1 211746227 212989347 1243121 * c(MIR3122, TATDN3, FAM71A, INTS7, NSL1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, SNORA16B, SLC30A1, LPGAT1) 0.422964502557019 28 0.0421189264850609 1.0035470347127 1078 0.25024490461854 4 2 2 -7.16201009461532 LTS-017 chr1 212989348 219783284 6793937 * c(LINC00538, LINC00210, CENPF, LYPLAL1, SPATA17, TATDN3, SPATA45, ESRRG, RPS6KC1, FLVCR1, KCNK2, RRP15, KCTD3, GPATCH2, PROX1, SMYD2, PTPN14, FLVCR1-AS1, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A, VASH2, ANGEL2) 0.428359841276853 46 0.0839962875876215 1.09610824610814 2572 0.287807426567346 4 2 2 -7.10191484370794 LTS-017 chr1 219783285 219785375 2091 * character(0) NA 0 NA 0.539432519149087 41 0.372134572760853 1 NA NA -5.76465427400863 LTS-017 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 1.474 1 NA NA NA NA NA LTS-017 chr1 220088472 224621934 4533463 * c(MIR320B2, MIR4742, BPNT1, DUSP10, BROX, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.423304290504393 50 0.0467586071963096 1.0494361092274 3138 0.248426058127208 4 2 2 -7.47598940432476 LTS-017 chr1 224621935 224622024 90 * WDR26 NA 0 NA 1.1143068921406 3 0.0282901631902916 4 NA NA -5.76475349772131 LTS-017 chr1 224622025 224803981 181957 * character(0) NA 0 NA 1.556 1 NA NA NA NA NA LTS-017 chr1 224803982 225156655 352674 * c(DNAH14, CNIH3) 0.315 1 NA 1.59833535516003 121 0.372821461491637 6 6 0 -5.76915486780204 LTS-017 chr1 225156656 229795893 4639238 * c(NA, MIR3620, MIR4666A, MIR5008, LEFTY1, SPHAR, SNAP47, CCSAP, DNAH14, MRPL55, HIST3H2BB, PARP1, RNF187, SDE2, IBA57, EPHX1, ABCB10, TAF5L, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, LBR, ZNF847P, H3F3AP4, TRIM17, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, TRIM11, HIST3H3, MIXL1, OBSCN, CDC42BPA, WNT3A, NA NA NA NA NA NA NA NA NA LTS-017 HIST3H2A, TMEM63A, URB2) 0.300689098608582 138 0.0525373150247471 1.55275457078768 5301 0.355131668695513 6 4 2 -7.44342898258279 LTS-017 NA NA NA NA LTS-017 chr1 229795894 230417408 621515 * c(GALNT2, URB2) 0.261338713885924 9 0.0123973563490143 1.94208291616969 137 0.466450831456645 12 9 3 -7.22746275326604 LTS-017 chr1 230417409 230417664 256 * GALNT2 0.247 1 NA 2.40067332113386 7 0.215496105367525 9 9 0 -5.76441060656644 LTS-017 chr1 230417665 232650633 2232969 * c(LINC00582, MIR1182, TSNAX-DISC1, CAPN9, C1orf131, EXOC8, LOC149373, AGT, COG2, GALNT2, DISC2, DISC1, FAM89A, TRIM67, EGLN1, SIPA1L2, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, SPRTN, GNPAT, C1orf198) 0.237617284595908 34 0.0595103085783839 1.89635036224445 1900 0.4573771988937 6 5 1 -6.95837832252681 LTS-017 chr1 232650634 249211619 16560986 * c(AKT3, LOC100130331, LGALS8-AS1, MIR1537, LINC00184, MIR3123, MIR3124, MIR3916, LINC01354, LINC01132, ZNF670-ZNF695, MIR4753, MIR4677, MIR4671, MIR4427, ZBTB18, SDCCAG8, CHML, LYST, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, EDARADD, SLC35F3, B3GALNT2, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, RBM34, OPN3, OR2T6, LOC255654, C1orf101, NA NA NA NA NA NA NA NA NA LTS-017 TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, PGBD2, GNG4, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, IRF2BP2, KCNK1, COA6, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, LGALS8, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, MTR, NID1, DESI2, SCCPDH, ARID4B, MAP10, KIF26B, HEATR1, ZNF692, ERO1B, FMN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ZNF695, SIPA1L2, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, LYPD8, SMYD3, SNORA14B, TARBP1, TBCE, GPR137B, LINC01347, ZNF124, ZNF669, ZNF672, PCNX2, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, NTPCR, EFCAB2, MLK4, ZNF496, KMO, ACTN2, EXO1, ZNF670, GGPS1, TOMM20, CEP170) 0.253753551770285 255 0.0658131592574748 2.17134204407117 9498 0.79704447538202 8 6 2 -6.79084753937109 LTS-017 NA NA NA NA LTS-017 chr1 249211620 249214134 2515 * PGBD2 NA 0 NA 2.20571200864949 45 0.453314835852568 8 NA NA -5.76441091416379 LTS-017 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.466 1 NA 1.20946608778735 85 0.224376723404194 4 4 0 -5.76463310342139 LTS-017 chr2 218387 10262859 10044473 * c(LINC01304, RNASEH1-AS1, LOC100506274, YWHAQ, CMPK2, MBOAT2, TMEM18, LINC01105, CYS1, MYT1L, RNASEH1, SH3YL1, FAM150B, IAH1, GRHL1, LINC00298, LINC00299, ID2, LINC01115, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, RRM2, SOX11, ADAM17, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, RNF144A) 0.444029308889543 99 0.0796238580538983 1.18830206632961 3531 0.293541266591884 4 2 2 -6.73991373505315 LTS-017 chr2 10262860 10351242 88383 * c(MIR4261, C2orf48, RRM2) NA 0 NA 1.24693589279162 108 0.286704336557541 4 NA NA -5.76547953270957 LTS-017 chr2 10351243 10563233 211991 * HPCAL1 0.293 1 NA 1.0124734251621 23 0.148912394332274 3 3 0 -5.78705326292129 LTS-017 chr2 10563234 26534305 15971072 * c(MIR1301, SNORA80B, MIR3125, MIR4262, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, KLHL29, OSR1, TTC32, C2orf50, PQLC3, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, FLJ33534, TRIB2, HADHA, HADHB, HPCAL1, APOB, MSGN1, GEN1, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, NA NA NA NA NA NA NA NA NA LTS-017 MYCN, ODC1, ITSN2, DNAJC27, NBAS, SF3B6, POMC, ATAD2B, ASXL2, WDR35, RDH14, LDAH, SDC1, HS1BP3, LOC645949, FAM228A, RAD51AP2, DNAJC27-AS1, VSNL1, CENPO, SMC6, NOL10, WDCP, FAM49A, NCOA1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A) 0.35530722989692 144 0.0870927708719314 0.943660615219747 7555 0.225457598604684 3 2 1 -6.75918580820923 LTS-017 NA NA NA NA LTS-017 chr2 26534306 27545483 1011178 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.372828370488293 56 0.0689914520396944 1.00983338660272 2403 0.219215605758876 3 2 1 -6.78009491132233 LTS-017 chr2 27545484 32582565 5037082 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, EHD3, C2orf71, MPV17, CAPN14, MEMO1, YPEL5, PPM1G, PPP1CB, TRMT61B, SLC30A6, BIRC6, NLRC4, RBKS, FNDC4, SPAST, SRD5A2, SNORD92, XDH, GALNT14, CCDC121, CLIP4, LBH, C2orf16, YIPF4, ZNF512, DPY30, EIF2B4, CAPN13, MRPL33, BRE, SNX17, NA NA NA NA NA NA NA NA NA LTS-017 SUPT7L) 0.371847269378908 98 0.0779417376959763 0.944248577794822 4865 0.229426987824259 3 2 1 -6.73626831008911 LTS-017 NA NA NA NA LTS-017 chr2 32582566 32602663 20098 * BIRC6 NA 0 NA 1.546 1 NA NA NA NA NA LTS-017 chr2 32602664 32660744 58081 * BIRC6 NA 0 NA 1.37438599255023 83 0.229580394433151 5 NA NA -5.76600857395931 LTS-017 chr2 32660745 32661119 375 * BIRC6 NA 0 NA 0.924 1 NA NA NA NA NA LTS-017 chr2 32661120 43450033 10788914 * c(SLC8A1-AS1, ARHGEF33, LOC100271832, LOC100288911, CEBPZOS, MIR4765, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, OXER1, KCNG3, HAAO, PRKD3, GPATCH11, RASGRP3, QPCT, FAM98A, EML4, LINC00486, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, LTBP1, CRIM1, VIT, HEATR5B, NDUFAF7, TTC27, EIF2AK2, BIRC6, MTA3, ATL2, SRSF7, SLC8A1, SOS1, ZFP36L2, STRN, MIR558, LOC728730, MORN2, NA NA NA NA NA NA NA NA NA LTS-017 GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L, HNRNPLL, FEZ2) 0.372465682257279 110 0.0761544176620188 0.92274798081528 5171 0.227533394164494 3 2 1 -6.8433484438079 LTS-017 NA NA NA NA LTS-017 chr2 43450034 43457979 7946 * c(LINC01126, THADA, ZFP36L2) 0.473348572311287 5 0.0497272561076921 0.594978666394146 75 0.168958361521198 2 1 1 -7.02055547338504 LTS-017 chr2 43457980 53832111 10374132 * c(LINC01119, MIR548AD, LRPPRC, SIX2, GTF2A1L, STON1, PPP1R21, PLEKHH2, EPAS1, RHOQ, FSHR, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LHCGR, LINC01121, EPCAM, MSH2, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, NRXN1, CRIPT, PREPL, SOCS5) 0.360248757951194 115 0.0719966553592166 0.952950653240099 4321 0.726142863062561 3 2 1 -6.74284956930432 LTS-017 chr2 53832112 53897240 65129 * ASB3 NA 0 NA 0.573 1 NA NA NA NA NA LTS-017 chr2 53897241 54859926 962686 * c(MIR3682, GPR75, C2orf73, PSME4, ERLEC1, TSPYL6, CHAC2, ASB3, RPL23AP32, SPTBN1, ACYP2) 0.396689205759609 9 0.033555923471125 0.828427568490803 758 0.203190156635368 3 2 1 -7.35889225916309 LTS-017 chr2 54859927 54864853 4927 * SPTBN1 NA 0 NA 0.961 1 NA NA NA NA NA LTS-017 chr2 54864854 66795959 11931106 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, CCT4, B3GNT2, CFAP36, CCDC85A, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, SPRED2, EFEMP1, CEP68, EHBP1, LGALSL, LOC339803, C2orf74, LOC339807, PRORSD1P, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, MDH1, MEIS1, MTIF2, OTX1, WDPCP, VPS54, PEX13, BCL11A, AFTPH, FANCL, CCDC88A, RTN4, PELI1, PPP4R3B, RAB1A, NA NA NA NA NA NA NA NA NA LTS-017 REL, RPS27A, PAPOLG, SLC1A4, SPTBN1, MEIS1-AS3, UGP2, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, USP34, SERTAD2) 0.373170090399405 79 0.0763090327828781 0.914608522305845 5004 0.225155576579158 3 2 1 -6.93890378103426 LTS-017 NA NA NA NA LTS-017 chr2 66795960 66796169 210 * MEIS1 NA 0 NA 0.631 1 NA NA NA NA NA LTS-017 chr2 66796170 68361955 1565786 * c(C1D, WDR92, MEIS1, ETAA1, LOC644838) 0.466313444971118 3 0.029280255007997 0.738856843616653 215 0.185097094653138 2 1 1 -7.29694115776773 LTS-017 chr2 68361956 70781005 2419050 * c(SNORA36C, LOC100133985, MIR3126, PROKR1, SNRNP27, WDR92, ASPRV1, GKN2, APLF, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, PLEK, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.378142706145491 47 0.0523354299188595 0.907015229929355 2422 0.260650127742749 3 2 1 -6.79650218778877 LTS-017 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.341 1 NA NA NA NA NA LTS-017 chr2 70781031 91809286 21028256 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, MIR4436A, MIR4780, PARTICL, MIR5000, MPHOSPH10, SMYD5, SEMA4F, CCT7, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, CYTOR, TEX261, MRPL53, ADD2, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, SMYD1, FBXO41, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, TEX37, EMX1, FABP1, RPIA, EXOC6B, NA NA NA NA NA NA NA NA NA LTS-017 WBP1, VAX2, POLR1A, RAB11FIP5, GGCX, ZNF638, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, FIGLA, NOTO, FOXI3, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, PAIP2B, MAT2A, CD207, REG3A, TPRKB, RNF181, KRCC1, MRPL35, CHMP3, ATP6V1B1, RETSAT, AUP1, PTCD3, MOB1A, THNSL2, NAGK, KDM3A, CYP26B1, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, ANKRD36BP2, RMND5A, REEP1, LOC654342, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SPR, TACR1, SNORD94, GCFC2, TGFA, ACTG2, ALMS1, MOGS, RNF103, OR7E91P, ANKRD53, LRRTM4, CAPG, DYSF, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, PRADC1, DUSP11, MCEE, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, SFXN5, EIF2AK3, MRPL19) 0.358918168706748 193 0.0878994834602195 0.953116005182846 10646 0.298448420612535 3 2 1 -6.74251727534445 LTS-017 NA NA NA NA LTS-017 chr2 91809287 91809324 38 * LOC654342 0.46 1 NA 2.387 1 NA NA NA NA NA LTS-017 chr2 91809325 91925139 115815 * LOC654342 0.427215418354332 3 0.067278030094031 1.30375441601605 13 0.596125524554721 4 2 2 -6.75095675393596 LTS-017 chr2 91925140 91925151 12 * character(0) 0.415 1 NA 2.631 1 NA NA NA NA NA LTS-017 chr2 91925152 91937699 12548 * character(0) 0.16960609164833 9 0.108213908533053 1.46042849836704 49 0.877318193465195 8 7 1 -6.73813022196662 LTS-017 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.34693340649827 17 0.475689515026222 5 NA NA -5.76463675500066 LTS-017 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.4 1 NA 0.833 1 NA NA NA NA NA LTS-017 chr2 95537246 96619688 1082443 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.35513066040994 38 0.092697829664273 1.19122042472878 842 0.34389785385115 4 3 1 -6.98258711125922 LTS-017 chr2 96619689 96619734 46 * character(0) 0.487 1 NA 0.997 1 NA NA NA NA NA LTS-017 chr2 96619735 137852726 41232992 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, BCL2L11, FAR2P2, LOC100287010, SH3RF3-AS1, MIR663B, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, MIR3679, LINC01158, LOC100507334, LOC100507600, MIR4772, MIR4783, MIR4782, MIR4784, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, MAP3K2, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, TUBA3E, MGAT4A, TUBA3D, LYPD1, RPL23AP7, CNGA3, NMS, LYG1, MITD1, CNTNAP5, FBLN7, ACMSD, FAM168B, NA NA NA NA NA NA NA NA NA LTS-017 C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, GPAT2, ITPRIPL1, LOC150776, WTH3DI, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, DARS, DBI, LONRF2, CCDC138, C1QL2, DUSP2, FOXD4L1, CFAP221, VWA3B, CREG2, ANKRD23, EN1, AMER3, LINC00116, ERCC3, FHL2, RAB3GAP1, SNRNP200, UBXN4, CLASP1, NCAPH, TMEM131, R3HDM1, PSD4, NIFK-AS1, LYG2, UNC50, PTPN18, CNNM4, CNNM3, IL36RN, IL36B, IL37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, STARD7-AS1, MED15P9, PLGLA, RGPD4, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, KIAA1211L, NCKAP5, SH3RF3, GPR148, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, LOC389033, LINC01120, AFF3, LCT, LIMS1, FLJ42351, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, ASTL, LINC01191, FAR2P1, LOC440910, SULT1C3, POTEE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MYO7B, NPAS2, NPHP1, COA5, ARHGEF4, INSIG2, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POLR2D, CCDC93, POU3F3, SEMA4C, PLEKHB2, STEAP3, ACOXL, WDR33, ANKRD30BL, CNOT11, SMPD4, TMEM127, IWS1, LIMS2, KANSL3, CFC1, PROC, IL36G, UGGT1, STARD7, DPP10, EPB41L5, ANKRD36B, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, POTEI, CFC1B, RGPD3, POTEJ, MZT2A, FAM138B, PAX8-AS1, SLC9A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, POTEF, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, PAX8, IL1R2, MALL, CXCR4, PDCL3, C2orf49, TMEM185B, SAP130, MZT2B, MAP3K19, UXS1, SLC35F5, TSGA10, THSD7B, TMEM177, LMAN2L, TMEM163, AMMECR1L, ZRANB3, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 FER1L5, CCNT2, CCDC74A, CCDC74B, IL1RL1, IMP4, NEURL3, CIAO1, TGFBRAP1, HS6ST1, MAP4K4, CHST10, GCC2, EIF5B) 0.438390661849793 451 0.0827647878681795 1.17263320545861 20948 0.312995789343038 4 2 2 -6.83952945158615 LTS-017 NA NA NA NA LTS-017 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.469 1 NA NA NA NA NA LTS-017 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.446976290543394 17 0.0441202401198735 1.25097384939008 979 0.396623410277403 4 2 2 -6.79240637704786 LTS-017 chr2 143642881 148602475 4959595 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.278574760038561 3 0.220050751721809 1.00014609830026 458 0.304125830996293 3 2 1 -6.9151968477594 LTS-017 chr2 148602476 148602596 121 * ACVR2A NA 0 NA 2.058 1 NA NA NA NA NA LTS-017 chr2 148602597 161350351 12747755 * c(LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, STAM2, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, EPC2, ARL5A, MMADHC, GPD2, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, ORC4, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, ERMN, RBMS1, MARCH7, TNFAIP6, CACNB4, PKP4, TANC1, ACVR1, NMI, ACVR2A, DAPL1, CYTIP, CD302) 0.433162932836426 79 0.118921335338541 1.1599848895778 5961 0.265446264604947 4 2 2 -6.84043468325059 LTS-017 chr2 161350352 161797411 447060 * character(0) NA 0 NA 0.927 1 NA NA NA NA NA LTS-017 chr2 161797412 163302676 1505265 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.457722793249836 5 0.0802464952505715 1.07116349981147 1035 0.209939293850573 4 2 2 -7.01101895091072 LTS-017 chr2 163302677 163302681 5 * KCNH7 NA 0 NA 1.156 1 NA NA NA NA NA LTS-017 chr2 163302682 170366300 7063619 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, GRB14, LRP2, FIGN, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1, KCNH7) 0.455584130171003 71 0.0571343399085058 1.20082513443888 3863 0.31567685191536 4 2 2 -6.78727926790359 LTS-017 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 1.054 1 NA NA NA NA NA LTS-017 chr2 170366321 183948321 13582001 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, NA NA NA NA NA NA NA NA NA LTS-017 HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.445781516829694 224 0.0848147469467879 1.12451487009022 11323 0.282822924522829 4 2 2 -7.11262442381566 LTS-017 NA NA NA NA LTS-017 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.319 1 NA NA NA NA NA LTS-017 chr2 183951766 189923694 5971929 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.421389316132432 26 0.132853325716168 1.2266668854964 2171 0.623441937077152 4 2 2 -6.74828989088363 LTS-017 chr2 189923695 189925399 1705 * COL5A2 NA 0 NA 0.78 1 NA NA NA NA NA LTS-017 chr2 189925400 196664204 6738805 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, DNAH7, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.455186469275324 36 0.0354496177246722 1.1396516850271 2646 0.275638669317826 4 2 2 -6.99117727009975 LTS-017 chr2 196664205 196671373 7169 * DNAH7 NA 0 NA 0.859 1 NA NA NA NA NA LTS-017 chr2 196671374 196933490 262117 * DNAH7 0.331999768497718 3 0.0408574758561188 0.838213966358013 295 0.197442329769196 3 2 1 -7.26197470975651 LTS-017 chr2 196933491 198949169 2015679 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.434672830725849 47 0.134538870509886 1.03725766533939 1829 0.258554790332166 3 2 1 -7.00518437654725 LTS-017 chr2 198949170 206861167 7911998 * c(SNORD11B, LOC100507140, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SPATS2L, FAM126B, ICOS, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, INO80D, STRADB, WDR12, CYP20A1, ALS2, MPP4, NIF3L1, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, NRP2, NA NA NA NA NA NA NA NA NA LTS-017 CFLAR, CD28, BZW1) 0.430669469059681 68 0.0970529337479199 1.1446517858492 5513 0.297633571604001 4 2 2 -6.842824156115 LTS-017 NA NA NA NA LTS-017 chr2 206861168 207146689 285522 * c(GCSHP3, EEF1B2, SNORD51, GPR1, NDUFS1, INO80D, ZDBF2, SNORA41) 0.41971095422172 14 0.0395857672280451 1.43119077722078 461 0.419935670791978 5 3 2 -6.77423070071754 LTS-017 chr2 207146690 207161951 15262 * ZDBF2 NA 0 NA 1.012 1 NA NA NA NA NA LTS-017 chr2 207161952 224616644 17454693 * c(LOC100129175, LOC100130451, MIR548F2, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, SPEG, LANCL1, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, PIKFYVE, LOC200726, NA NA NA NA NA NA NA NA NA LTS-017 EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, CNPPD1, STK36, UNC80, RUFY4, CPS1-IT1, GMPPA, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, ATIC, MIR375, SMARCAL1, PAX3, PRKAG3, FEV, ANKZF1, ASIC4, MREG, PECR, PTH2R, MARCH4, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RPE, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC4A3, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, KLF7, ADAM23, CDK5R2, CNOT9, TMEM169, TTLL4) 0.440052777272834 166 0.0970409277446338 1.19410940945841 12140 0.444362983535605 4 2 2 -6.7335564980488 LTS-017 NA NA NA NA LTS-017 chr2 224616645 230911118 6294474 * c(MIR4439, MIR5702, MIR5703, COL4A3, COL4A4, AP1S3, FBXO36, SLC16A14, DAW1, AGFG1, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER, TRIP12) 0.43380089090138 65 0.0855042256040826 1.12714095481309 3157 0.699989354968187 4 2 2 -6.76264121315326 LTS-017 chr2 230911119 231177928 266810 * c(SP140, FBXO36, SLC16A14, SP110) 0.407413642689455 8 0.0363256599586101 1.39914178552673 275 0.33816313359633 5 3 2 -6.73603983795501 LTS-017 chr2 231177929 231191834 13906 * SP140 NA 0 NA 0.863 1 NA NA NA NA NA LTS-017 chr2 231191835 231624813 432979 * c(SP140, LOC151475, CAB39, SP100, SP140L) 0.439496931847172 23 0.0363903409848829 1.05713726405098 371 0.233080654882874 4 2 2 -6.80669769733971 LTS-017 chr2 231624814 233209098 1584285 * c(MIR1471, MIR4777, NMUR1, DIS3L2, SPATA3, LINC00471, LOC151484, C2orf57, C2orf72, SNORD82, HTR2B, SPATA3-AS1, NCL, NPPC, PDE6D, CAB39, PSMD1, PTMA, SNORD20, COPS7B, SNORA75, ARMC9, ITM2C, GPR55, B3GNT7) 0.45659593898279 34 0.0379697787697235 1.19444777378808 1332 0.278671020977016 4 2 2 -6.86796856486136 LTS-017 chr2 233209099 233243161 34063 * character(0) NA 0 NA 0.559 1 NA NA NA NA NA LTS-017 chr2 233243162 233310391 67230 * c(ALPP, ALPPL2, ECEL1P2) 0 2 0 0.622443061389045 149 0.31010264401917 0 0 0 -Inf LTS-017 chr2 233310392 233320722 10331 * character(0) NA 0 NA 1.539 1 NA NA NA NA NA LTS-017 chr2 233320723 241626139 8305417 * c(PP14571, LOC100286922, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, COPS8, CAPN10, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, TIGD1, SH3BP4, ALPI, NGEF, GIGYF2, TRAF3IP1, GBX2, GPC1, DUSP28, GPR35, ESPNL, INPP5D, RBM44, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NDUFA10, NEU2, PRLH, ANKMY1, NA NA NA NA NA NA NA NA NA LTS-017 SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, HES6, ACKR3, RNPEPL1, SAG, RAB17, LOC643387, PRR21, PRSS56, AQP12B, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, EFHD1, ILKAP, MGC16025, DGKD, PER2, LRRFIP1, ECEL1, EIF4E2, HDAC4) 0.454511767993918 212 0.0475173758793803 1.15657988890715 6966 0.281266622929769 4 2 2 -6.87538937279247 LTS-017 NA NA NA NA LTS-017 chr2 241626140 241655544 29405 * c(AQP12A, KIF1A) 0.443269627844314 7 0.0357790840735597 1.24987640557151 109 0.340350809654315 4 2 2 -6.74445435955955 LTS-017 chr2 241655545 241684853 29309 * KIF1A 0 1 NA 1.28982786838099 113 0.483249871403113 4 4 0 -5.76482845797237 LTS-017 chr2 241684854 241815307 130454 * c(AGXT, KIF1A) 0.334667798418673 10 0.164120856552589 1.26847167378415 204 0.551236957578995 6 4 2 -6.76222146584259 LTS-017 chr2 241815308 241817516 2209 * AGXT 0.491 1 NA 1.38443597352884 17 0.208394616476699 5 5 0 -5.76446366453944 LTS-017 chr2 241817517 242097293 279777 * c(MTERF4, AGXT, LOC200772, PASK, SNED1, PPP1R7, C2orf54) 0.44733189736781 40 0.0537094211761486 1.25434509281495 768 1.55826193359373 4 2 2 -6.74976707915326 LTS-017 chr2 242097294 242097823 530 * PPP1R7 NA 0 NA 1.862 1 NA NA NA NA NA LTS-017 chr2 242097824 242542477 444654 * c(BOK-AS1, STK25, HDLBP, SEPT2, ANO7, THAP4, PPP1R7, BOK, FARP2) 0.386742628056698 13 0.036733621851908 1.46226529794924 829 0.312961353710823 5 3 2 -6.95181630329157 LTS-017 chr2 242542478 242836535 294058 * c(NEU4, DTYMK, ATG4B, RTP5, THAP4, PDCD1, GAL3ST2, D2HGDH, ING5) 0.457311042386719 39 0.0805408673223838 1.19364968167456 700 0.238131725539372 4 2 2 -6.76599134665788 LTS-017 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 1.24838022740091 25 0.138545804700106 4 NA NA -5.77539003021471 LTS-017 chr3 239351 1215013 975663 * c(CHL1, CNTN6) 0.164 1 NA 0.745456598011463 223 0.163615734675174 2 2 0 -5.83438267094208 LTS-017 chr3 1215014 13573936 12358923 * c(MIR885, EGOT, GHRLOS, MKRN2OS, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, TAMM41, IL17RE, CPNE9, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, CNTN6, SUMF1, RPUSD3, PRRT3, LINC00606, GRM7, LINC00312, LMCD1, HRH1, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, NA NA NA NA NA NA NA NA NA LTS-017 GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, SETMAR, MTMR14, SLC6A1, SLC6A11, SYN2, TIMP4, VHL, BRPF1, CRELD1, HDAC11, TSEN2, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.131898317594126 178 0.0605353284871616 0.745121798977781 7107 0.240399165429806 2 2 0 -7.16965378206586 LTS-017 NA NA NA NA LTS-017 chr3 13573937 13574001 65 * FBLN2 NA 0 NA 1.007 1 NA NA NA NA NA LTS-017 chr3 13574002 13860356 286355 * c(FBLN2, LINC00620, WNT7A) 0.300636962428677 7 0.109340229166971 1.0233647122274 180 0.260700949502268 4 3 1 -6.79675009639489 LTS-017 chr3 13860357 13860454 98 * WNT7A NA 0 NA 0.762 1 NA NA NA NA NA LTS-017 chr3 13860455 16327855 2467401 * c(FGD5P1, MIR4270, FGD5-AS1, SH3BP5-AS1, GALNT15, CHCHD4, METTL6, FGD5, ANKRD28, CAPN7, HACL1, LSM3, DPH3, COL6A4P1, TPRXL, CCDC174, RBSN, MRPS25, SLC6A6, BTD, MIR563, NR2C2, WNT7A, XPC, TMEM43, GRIP2, COLQ, C3orf20, EAF1, OXNAD1, SH3BP5) 0.127780581341709 62 0.0523328266846934 0.732062329718776 2573 0.20703846133796 2 2 0 -6.89098088142649 LTS-017 chr3 16327856 16357978 30123 * c(RFTN1, OXNAD1) 0.106 1 NA 0.776605737394143 85 0.292634298695674 2 2 0 -5.76642953104048 LTS-017 chr3 16357979 16535355 177377 * c(RFTN1, OXNAD1) 0.125413269866732 3 0.0608522801544856 0.75723052226251 83 0.15708435492951 2 2 0 -6.85223261584092 LTS-017 chr3 16535356 21461226 4925871 * c(MIR3714, MIR4791, SGO1-AS1, KCNH8, SGO1, PP2D1, EFHB, DAZL, RFTN1, PLCL2, LOC339862, VENTXP7, RAB5A, SATB1, KAT2B, TBC1D5) 0.168032661670749 25 0.0617229562912644 0.664018121196836 1197 0.168713006192199 2 2 0 -7.12264280260075 LTS-017 chr3 21461227 26752211 5290985 * c(MIR548AC, MIR4792, MIR4442, LRRC3B, LINC00691, NKIRAS1, LINC00692, OXSM, NGLY1, RARB, RPL15, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0.150457424898032 17 0.036881467528541 0.74775932466665 1008 0.202747476201843 2 2 0 -6.99884988157169 LTS-017 chr3 26752212 27151599 399388 * LRRC3B NA 0 NA 0.648 1 NA NA NA NA NA LTS-017 chr3 27151600 29322492 2170893 * c(ZCWPW2, CMC1, NEK10, AZI2, LINC00693, EOMES, SLC4A7) 0.154666016039207 25 0.0864995761068612 0.65656953097802 827 0.235660348088002 2 2 0 -6.84775535265335 LTS-017 chr3 29322493 29322524 32 * character(0) NA 0 NA 0.859 1 NA NA NA NA NA LTS-017 chr3 29322525 35835971 6513447 * c(PDCD6IP, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, CCR4, TRIM71, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GADL1, ZNF860, MIR128-2, DYNC1LI1, CMTM6, TMPPE, TGFBR2, UBP1) 0.147241236972679 47 0.0627040093172584 0.739618700705972 2617 0.600625997845815 2 2 0 -6.76014837290476 LTS-017 chr3 36421822 38802262 2380441 * c(ACVR2B-AS1, CTDSPL, GOLGA4, ACAA1, C3orf35, ITGA9, MIR26A1, MLH1, MYD88, VILL, PLCD1, SCN5A, SCN10A, STAC, DCLK3, LRRFIP2, ACVR2B, SLC22A14, SLC22A13, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.215079517384185 29 0.054789790858024 0.502504008929918 2945 0.138890275967746 1 1 0 -7.36566343013263 LTS-017 chr3 38802263 38802694 432 * SCN10A NA 0 NA 0.732 1 NA NA NA NA NA LTS-017 chr3 38802695 38802848 154 * SCN10A 0 1 NA 1.22768979524677 4 1.50529299473558 4 4 0 -5.76441016030332 LTS-017 chr3 38802849 38887253 84405 * SCN10A 0.381 1 NA 0.708316099441961 31 0.178940477879254 2 2 0 -5.7644631935929 LTS-017 chr3 38887254 46623760 7736507 * c(KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, EIF1B, CXCR6, CCR9, SCN11A, ZNF501, CCR1, CCR3, CCR5, CCR8, ACKR2, LYZL4, KLHL40, TMEM42, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, SACM1L, EXOSC7, LARS2, ZNF620, TMEM158, MYRIP, HIGD1A, XCR1, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, RPSA, LTF, MIR138-1, MOBP, EIF1B-AS1, NKTR, ABHD5, SS18L2, ZDHHC3, LZTFL1, SLC6A20, NA NA NA NA NA NA NA NA NA LTS-017 SNRK, SLC25A38, ULK4, ANO10, ZKSCAN7, KIF15, SNORA6, KIAA1143, HHATL, WDR48, SNORA62, LIMD1-AS1, CSRNP1, GORASP1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, VIPR1, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, CCK, LIMD1, CCRL2, RPL14, SEC22C, ZNF502, ZBTB47, ENTPD3) 0.444731529704359 147 0.0694386674949353 0.726377916037473 7441 0.216360247172368 2 1 1 -6.8316756582092 LTS-017 NA NA NA NA LTS-017 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.812 1 NA NA NA NA NA LTS-017 chr3 46623907 47039781 415875 * c(LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.422613341134936 13 0.129933069555454 0.812360100998382 724 0.283965367246223 2 1 1 -6.80434804340282 LTS-017 chr3 47039782 47039895 114 * NBEAL2 NA 0 NA 1.169 1 NA NA NA NA NA LTS-017 chr3 47039896 47079213 39318 * c(NRADDP, NBEAL2, SETD2) NA 0 NA 1.13882463985106 214 1.05281863573286 4 NA NA -5.76446328675525 LTS-017 chr3 47079214 47539883 460670 * c(SCAP, KLHL18, PTPN23, KIF9-AS1, SETD2, ELP6, KIF9) 0.467347239488396 2 0.00282842712474619 0.754435840788211 750 0.277083513649352 2 1 1 -16.0182602525673 LTS-017 chr3 47539884 47712202 172319 * c(CSPG5, ELP6, SMARCC1) 0.319 1 NA 0.753628133365068 250 0.147021664332616 2 2 0 -5.78631800665702 LTS-017 chr3 47712203 49138739 1426537 * c(MIR1226, MIR711, MIR4793, MIR4443, NME6, ARIH2, WDR6, TREX1, COL7A1, CELSR3, DHX30, NDUFAF3, FBXW12, IMPDH2, MIR191, MAP4, TMEM89, MIR425, SHISA5, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLXNB1, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, SPINK8, ARIH2OS, SLC26A6, SMARCC1, UQCRC1, SLC25A20, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.305675719357403 10 0.234840749823743 0.750795367177463 3651 0.167510857640188 2 1 1 -7.04131698989638 LTS-017 chr3 49138740 49140119 1380 * QARS 0.458 1 NA 0.802612415858288 23 0.24892357987262 2 2 0 -5.76463848755503 LTS-017 chr3 49140120 56628086 7487967 * c(SNORD19B, LINC00696, BSN-AS2, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, TRAIP, NPRL2, USP19, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, KLHDC8B, ALAS1, LAMB2P1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, CCDC66, GPX1, NA NA NA NA NA NA NA NA NA LTS-017 SPCS1, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, MST1, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, C3orf84, CCDC71, NT5DC2, NEK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, ESRG, WDR82, BAP1, HYAL3, NICN1, MON1A, ABHD14B, HYAL2, BSN, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1) 0.451245405054742 110 0.0428116975978452 0.766808895135034 10700 0.163117293162897 2 1 1 -7.81314922341708 LTS-017 NA NA NA NA LTS-017 chr3 56628087 56647638 19552 * CCDC66 NA 0 NA 0.595 1 NA NA NA NA NA LTS-017 chr3 56647639 56771381 123743 * c(FAM208A, CCDC66, ARHGEF3) 0.462259258163715 13 0.0320706351827593 0.641942427673054 330 0.141235755361782 2 1 1 -7.0800005352666 LTS-017 chr3 56771382 56779239 7858 * ARHGEF3 NA 0 NA 0.837 1 NA NA NA NA NA LTS-017 chr3 56779240 58551571 1772332 * c(ARHGEF3-AS1, RPP14, FAM107A, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.460966907898708 44 0.0344330324097404 0.730126958050882 2365 0.171933412128069 2 1 1 -7.02706571564536 LTS-017 chr3 58551572 58552329 758 * FAM107A 0.404 1 NA 0.689786742336372 15 0.092841031569329 2 2 0 -5.76443274849103 LTS-017 chr3 58552330 62861055 4308726 * c(PTPRG-AS1, FAM107A, FAM3D, C3orf67, FHIT, FEZF2, C3orf14, PTPRG, CADPS) 0.406217462223847 11 0.141158131830292 0.782456489480694 963 0.446128703208274 2 1 1 -6.90481420207889 LTS-017 chr3 62861056 63263740 402685 * c(LINC00698, CADPS) NA 0 NA 0.919 1 NA NA NA NA NA LTS-017 chr3 63263741 69024826 5761086 * c(LINC00994, MIR4272, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, FAM19A4, PRICKLE2, LRIG1, EOGT, FAM19A1, ADAMTS9, ATXN7, MIR548A2, THOC7, KBTBD8, SUCLG2, MAGI1, PSMD6) 0.367970905224476 31 0.0548486872643608 1.03296385832891 1742 0.227869267807808 3 2 1 -7.16006945292656 LTS-017 chr3 69024827 74312218 5287392 * c(MIR1284, MIR3136, ARL6IP5, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.453992864064151 40 0.0438730029131285 1.19162146963942 1880 0.286153352206897 4 2 2 -6.80881804651977 LTS-017 chr3 74312219 74344356 32138 * CNTN3 0.4 1 NA 1.31954097814656 49 0.275353881766867 5 5 0 -5.76646477147019 LTS-017 chr3 74344357 74419157 74801 * CNTN3 0.434 1 NA 1.22784883986537 64 0.186836827204917 4 4 0 -5.76523246564492 LTS-017 chr3 74419158 74420309 1152 * CNTN3 NA 0 NA 1.39 1 NA NA NA NA NA LTS-017 chr3 74420310 75785475 1365166 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.368548047504444 72 0.0928022743704351 1.56082425808569 181 0.727345556713226 6 4 2 -6.75816479426263 LTS-017 chr3 75785476 75785525 50 * ZNF717 NA 0 NA 0.796 1 NA NA NA NA NA LTS-017 chr3 75785526 89448974 13663449 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.385658511912854 103 0.0939908619201903 1.09718914035232 1660 0.306510482976519 4 2 2 -7.51585408127172 LTS-017 chr3 89448975 90283666 834692 * EPHA3 NA 0 NA 1.14879209532862 135 0.281297234446486 4 NA NA -5.77516569237981 LTS-017 chr3 93591838 93692736 100899 * PROS1 0.401 1 NA 1.15734501049414 91 0.287746814161042 4 4 0 -5.76524744075422 LTS-017 chr3 93692737 100174637 6481901 * c(MTHFD2P1, MIR548G, MIR3921, ST3GAL6-AS1, ST3GAL6, FILIP1L, COL8A1, CRYBG3, DCBLD2, CPOX, ARL13B, DHFR2, GABRR3, LINC00879, OR5K1, OR5H1, GPR15, EPHA6, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, TBC1D23, PROS1, CLDND1, NIT2, NSUN3, TMEM30CP, OR5H6, OR5H2, OR5AC2, ARL6, CMSS1, MINA, TOMM70) 0.452393398304555 46 0.0469488775313029 1.11081159283215 2148 0.316043458941241 4 2 2 -6.99668680532128 LTS-017 chr3 100174638 100174722 85 * LNP1 0.409 1 NA 1.862 1 NA NA NA NA NA LTS-017 chr3 100174723 108474524 8299802 * c(ZBTB11-AS1, LINC00882, TFG, HHLA2, ZPLD1, FAM172BP, LINC00635, LOC152225, ALCAM, MYH15, ABI3BP, ZBTB11, LINC00636, PDCL3P4, DUBR, LNP1, IMPG2, TRMT10C, TMEM45A, IFT57, BBX, PCNP, SENP7, KIAA1524, RPL24, NFKBIZ, MIR548A3, CEP97, RETNLB, CCDC54, ADGRG7, CBLB, NXPE3, CD47, DZIP3) 0.455590708757933 59 0.0703249492031157 1.17897633606648 3055 0.308122291141738 4 2 2 -6.78100688390731 LTS-017 chr3 108474525 108476293 1769 * RETNLB 0 1 NA 1.22317422409255 19 0.551611159554472 4 4 0 -5.76441174289527 LTS-017 chr3 108476294 110790715 2314422 * c(PVRL3-AS1, DPPA2, NECTIN3, MORC1, FLJ22763, LINC01205, TRAT1, DPPA4, LINC00488, GUCA1C) 0.460068839924947 13 0.0260492629946435 1.21666858453305 434 0.708213102835806 4 2 2 -7.12295798059373 LTS-017 chr3 110790716 110790720 5 * NECTIN3 NA 0 NA 1.925 1 NA NA NA NA NA LTS-017 chr3 110790721 122598293 11807573 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, POLQ, FSTL1, LRRC58, CCDC58, CD200R1, ADPRH, CSTA, DTX3L, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, PARP15, GPR156, DRD3, TIGIT, USF3, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, FAM162A, GOLGB1, TUSC7, RABL3, SLC9C1, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, TMPRSS7, CD200R1L, KPNA1, LSAMP, MIR198, CD200, NDUFB4, NA NA NA NA NA NA NA NA NA LTS-017 ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, SLC35A5, TMEM39A, ABHD10, CFAP44, EAF2, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, SLC15A2, MIR567, MIR568, UPK1B, ZNF80, ZBED2, HSPBAP1, C3orf52, QTRT2, NAA50, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, CD80, CD86, STXBP5L, IQCB1) 0.402919051811023 151 0.0879034891205036 1.3695491127528 8722 0.382681102824861 5 3 2 -6.86764231281763 LTS-017 NA NA NA NA LTS-017 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.666 1 NA NA NA NA NA LTS-017 chr3 122598385 123303998 705614 * c(LOC100129550, PDIA5, ADCY5, HACD2, SEC22A, SEMA5B, DIRC2) 0.363992111492137 20 0.134806635398145 1.47713167896226 691 0.354619529497076 6 4 2 -6.7970111192379 LTS-017 chr3 123303999 123328888 24890 * MYLK-AS1 NA 0 NA 2.248 1 NA NA NA NA NA LTS-017 chr3 123328889 123471402 142514 * c(MYLK-AS1, MYLK) 0.452691213036193 18 0.0427072799965753 1.79994647950238 377 0.494368452856065 6 3 3 -6.80095888727562 LTS-017 chr3 123471403 123512547 41145 * MYLK NA 0 NA 1.521 1 NA NA NA NA NA LTS-017 chr3 123512548 138668692 15156145 * c(FAM86JP, MIR548I1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, NPHP3, ATP2C1, GP9, NA NA NA NA NA NA NA NA NA LTS-017 DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, ITGB5, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, ROPN1, SLC41A3, ACPP, MSL2, FAIM, PPP2R3A, CDV3, IFT122, MUC13, HMCES, ISY1, HEG1, KIAA1257, SRPRB, RHO, EEFSEC, RPN1, RYK, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12) 0.405398481900091 287 0.0756260344930947 1.43663232076875 11520 0.337340088051849 5 3 2 -6.73653876097579 LTS-017 NA NA NA NA LTS-017 chr3 138668693 138669222 530 * FOXL2NB 0.355 1 NA 1.41390606712479 13 0.201022610030787 5 5 0 -5.76441354156731 LTS-017 chr3 138669223 138723613 54391 * c(FOXL2NB, PRR23A) 0.240665613184636 9 0.185461586319108 1.43419911623573 79 0.442820732981119 5 4 1 -6.73322199219078 LTS-017 chr3 138723614 138724757 1144 * PRR23A 0.45 1 NA 1.25007394967489 25 0.20222512207933 4 4 0 -5.76444147632555 LTS-017 chr3 138724758 141011208 2286451 * c(PISRT1, TRIM42, NMNAT3, PRR23B, PRR23C, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, PRR23A, SPSB4, PXYLP1, COPB2) 0.408089905271089 31 0.0477552226497017 1.47477596191456 957 0.387911064111935 5 3 2 -6.73756454095241 LTS-017 chr3 141011209 158542114 17530906 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, LOC100507389, ARHGEF26-AS1, LOC100507537, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, GPR171, GYG1, LINC00880, AADACL2, GPR149, NA NA NA NA NA NA NA NA NA LTS-017 PAQR9, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, HLTF, SSR3, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, EIF2A, ZIC4, HPS3, GFM1, GMPS, SLC33A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.388013412617468 146 0.0854325314521695 1.34848543012876 8545 0.355171840858165 5 3 2 -7.13483367143339 LTS-017 NA NA NA NA LTS-017 chr3 158542115 158543688 1574 * MFSD1 NA 0 NA 2.284 1 NA NA NA NA NA LTS-017 chr3 158543689 178562263 20018575 * c(LOC100128164, MIR3919, IQCJ-SCHIP1, LINC00578, SMC4, MIR4789, NAALADL2-AS3, LINC01014, LOC101243545, KCNMB2, PDCD10, OTOL1, PPM1L, WDR49, LRRC34, SPTSSB, ECT2, RPL22L1, MECOM, SLITRK3, NLGN1, TNIK, NAALADL2, GHSR, GPR160, GOLIM4, TRIM59, SCHIP1, LRRIQ4, SAMD7, IL12A, KPNA4, TMEM212, C3orf80, MIR15B, MIR16-2, CLDN11, NMD3, SERPINI1, SERPINI2, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, IFT80, SLC7A14, BCHE, LINC01330, NA NA NA NA NA NA NA NA NA LTS-017 LINC01192, MFSD1, SI, FNDC3B, SKIL, SLC2A2, IQCJ, SCARNA7, MIR551B, MIR569, TERC, SEC62, TBL1XR1, ZBBX, LRRC31, PHC3, ARL14, SPATA16, ACTRT3, B3GALNT1, TNFSF10, EGFEM1P) 0.385571846213912 114 0.0898411940539816 1.41674476460151 5794 0.483530491110375 5 3 2 -6.79277586142137 LTS-017 NA NA NA NA LTS-017 chr3 178562264 178735014 172751 * ZMAT3 NA 0 NA 0.868 1 NA NA NA NA NA LTS-017 chr3 178735015 183704813 4969799 * c(LINC00888, ABCC5, DNAJC19, TTC14, MCF2L2, ATP11B, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, MAP6D1, FXR1, B3GNT5, ACTL6A, USP13, KLHL6) 0.406582157543162 39 0.0442780290849663 1.35147735094926 3514 0.325040488509468 5 3 2 -6.85574342773959 LTS-017 chr3 183704814 195306436 11601623 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, TMEM44-AS1, LOC100507391, ABCC5, MIR5692C1, OPA1-AS1, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, ACAP2, LOC253573, UTS2B, FETUB, NA NA NA NA NA NA NA NA NA LTS-017 GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, IL1RAP, KNG1, FLJ42393, LINC00884, LPP, OPA1, DNAJB11, POLR2H, PPP1R2, TBCCD1, P3H2, ABCF3, LSG1, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A3, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 VWA5B2, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ, CAMK2N2, ECE2) 0.386010104671018 279 0.0832341495311764 1.45585604897368 8538 0.469734881421574 5 3 2 -6.78191820360441 LTS-017 NA NA NA NA LTS-017 chr3 195306437 195345045 38609 * APOD NA 0 NA 3.223 1 NA NA NA NA NA LTS-017 chr3 195345046 195476016 130971 * c(MUC20, MUC4, MIR570, SDHAP2) 0.342573042854249 24 0.106845606814937 2.07503858262053 193 0.755286193848316 9 6 3 -6.73771121765882 LTS-017 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.346 1 NA NA NA NA NA LTS-017 chr3 195477782 195702756 224975 * c(TNK2, SDHAP1, MUC4) 0.34557868418754 24 0.0579459862185517 1.608811893976 379 0.479336862650624 6 4 2 -6.74619113820852 LTS-017 chr3 195702757 195703923 1167 * SDHAP1 NA 0 NA 0.762 1 NA NA NA NA NA LTS-017 chr3 195703924 197463689 1759766 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, CEP19, RUBCN) 0.366758751634559 72 0.101827526093992 1.34322966317055 2286 0.352804609243218 5 3 2 -6.87980282630662 LTS-017 chr3 197463690 197770512 306823 * c(RPL35A, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) NA 0 NA 1.35028021486822 535 0.312214024108034 5 NA NA -5.77284338904812 LTS-017 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.195 1 NA 1.05903165459668 13 0.214506260741816 3 3 0 -5.76549722948113 LTS-017 chr4 60336 3372183 3311848 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, NA NA NA NA NA NA NA NA NA LTS-017 TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.36229303597715 129 0.0610701867389755 0.940271739184916 5550 0.218452808980607 3 2 1 -6.7462920332067 LTS-017 NA NA NA NA LTS-017 chr4 3372184 3388020 15837 * RGS12 NA 0 NA 1.866 1 NA NA NA NA NA LTS-017 chr4 3388021 3769206 381186 * c(LOC100133461, ADRA2C, DOK7, LINC00955, HGFAC, LRPAP1, RGS12) 0.405624691841255 22 0.07113521360563 1.08015444334696 495 0.301795741579678 4 2 2 -6.88414788523616 LTS-017 chr4 3769207 17626418 13857212 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, CCDC96, BOD1L1, FBXL5, NSG1, GPR78, LOC285484, LINC01097, LINC01096, FAM200B, HMX1, FAM86EP, NA NA NA NA NA NA NA NA NA LTS-017 USP17L6P, USP17L9P, CPEB2-AS1, MSX1, LAP3, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, NKX3-2, QDPR, AFAP1, S100P, DEFB131, CLRN2, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 KIAA0232, WDR1, HS3ST1, FGFBP1) 0.368376385454537 218 0.0810909662686508 0.939038203859133 6362 0.238213767794594 3 2 1 -6.75538538712297 LTS-017 NA NA NA NA LTS-017 chr4 17626419 17626444 26 * MED28 NA 0 NA 0.615 1 NA NA NA NA NA LTS-017 chr4 17626445 17641035 14591 * c(FAM184B, MED28) 0.143 1 NA 0.643090482763446 113 0.104938788521134 2 2 0 -5.77095885043811 LTS-017 chr4 17641036 17643684 2649 * FAM184B NA 0 NA 0.942 1 NA NA NA NA NA LTS-017 chr4 17643685 25760680 8116996 * c(SLIT2-IT1, LOC100505912, SLC34A2, PPARGC1A, PACRGL, DHX15, ADGRA3, SEL1L3, LCORL, FAM184B, SEPSECS-AS1, ZCCHC4, ANAPC4, KCNIP4-IT1, MIR218-1, SEPSECS, DCAF16, LGI2, PI4K2B, GBA3, NCAPG, SOD3, MIR573, KCNIP4, CCDC149, SLIT2) 0.357748854447453 41 0.0803139191532582 0.947053266607429 2353 0.238775475957272 3 2 1 -6.74697250786256 LTS-017 chr4 25760681 25766965 6285 * SEL1L3 NA 0 NA 0.77 1 NA NA NA NA NA LTS-017 chr4 25766966 40816928 15049963 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, SEL1L3, PDS5A, UBE2K, APBB2, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, FAM114A1) 0.36836807079472 74 0.0523927458230944 0.897153076492494 4086 1.22992843901525 3 2 1 -6.75327679702224 LTS-017 chr4 40816929 40816933 5 * APBB2 NA 0 NA 1.383 1 NA NA NA NA NA LTS-017 chr4 40816934 41945883 1128950 * c(UCHL1-AS1, LIMCH1, APBB2, TMEM33, UCHL1, PHOX2B) 0.345324399971275 13 0.11324089367362 1.00892398417663 555 0.255288257751526 3 2 1 -6.79660340348206 LTS-017 chr4 41945884 41946718 835 * TMEM33 NA 0 NA 0.757 1 NA NA NA NA NA LTS-017 chr4 41946719 48993613 7046895 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.375907460441086 100 0.0711508966985666 0.915741938928615 3667 0.267857125261315 3 2 1 -6.81960093444378 LTS-017 chr4 48993614 49064107 70494 * CWH43 NA 0 NA 0.932786643491638 69 0.149946522152204 3 NA NA -5.76509104998217 LTS-017 chr4 52709193 52888499 179307 * c(DCUN1D4, LRRC66, SGCB) 0.442 1 NA 0.948100981874943 241 0.172116945049485 3 3 0 -5.76443743864192 LTS-017 chr4 52888500 78652768 25764269 * c(FAM47E, FTLP10, EPHA5-AS1, ERVMER34-1, CSN1S2BP, SRD5A3-AS1, THEGL, MIR4450, MIR4449, FAM47E-STBD1, LNX1-AS1, LNX1-AS2, ENAM, CXCL13, CENPC, PAICS, UGT2B11, NMU, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, SPATA18, TMPRSS11B, ARL9, AASDH, PDCL2, CSN1S1, CSN2, CSN3, LINC01618, SCFD2, THAP6, C4orf26, DCK, RASSF6, GSX2, AFM, AFP, EPHA5, EREG, ALB, RUFY3, ADGRL3, CNOT6L, TECRL, IGFBP7-AS1, EPGN, AMBN, PARM1, NA NA NA NA NA NA NA NA NA LTS-017 RCHY1, FDCSP, ANKRD17, STAP1, GC, CHIC2, SMR3A, NAAA, SULT1B1, GNRHR, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, CCDC158, TMPRSS11A, SOWAHB, IGFBP7, JCHAIN, CXCL8, CXCL10, AREG, KDR, KIT, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, PRR27, AMTN, RPL21P44, ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PDGFRA, PF4, PF4V1, NUP54, POLR2B, UGT2B28, PPEF2, PPAT, PPBP, ODAM, UBA6-AS1, LOC550113, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SDAD1, UBA6, SEPT11, EXOC1, TMEM165, UTP3, DANCR, UGT2A2, KIAA1211, SHROOM3, OPRPN, REST, CXCL6, CXCL11, CXCL5, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, SNORA26, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, TMPRSS11D, SCARB2, ADAMTS3, CLOCK, CEP135, G3BP2) 0.367731043556468 287 0.0784240642995547 0.927741236942541 11010 0.249591277309116 3 2 1 -6.87810724202508 LTS-017 NA NA NA NA LTS-017 chr4 78652769 78663203 10435 * CNOT6L NA 0 NA 0.548 1 NA NA NA NA NA LTS-017 chr4 78663204 78740158 76955 * CNOT6L 0.468086228262394 2 0.0502045814642449 0.565340701163086 45 0.144948186493232 2 1 1 -7.04016041353926 LTS-017 chr4 78740159 78740355 197 * CNOT6L NA 0 NA 0.975 1 NA NA NA NA NA LTS-017 chr4 78740356 82377329 3636974 * c(LINC01094, LINC01088, LINC00989, PCAT4, ANTXR2, PAQR3, RASGEF1B, FGF5, CNOT6L, C4orf22, GK2, ANXA3, BMP2K, PRKG2, PRDM8, MRPL1, BMP3, FRAS1, NAA11) 0.349566995251739 37 0.0559102133062641 0.923426461368631 1914 0.216953779787233 3 2 1 -6.84689863604623 LTS-017 chr4 82377330 82380713 3384 * RASGEF1B NA 0 NA 0.977169577793488 23 0.13544224152942 3 NA NA -5.76449355109367 LTS-017 chr4 83196933 83867599 670667 * c(THAP9-AS1, LIN54, SEC31A, HNRNPD, LINC00575, TMEM150C, ENOPH1, MIR575, THAP9, SCD5, HNRNPDL) 0.15 1 NA 0.66870955866623 684 0.182415166523365 2 2 0 -5.79662075030111 LTS-017 chr4 83867600 84465804 598205 * c(HPSE, HELQ, LIN54, COQ2, MRPS18C, COPS4, PLAC8, FAM175A, GPAT3) 0.194305789974892 9 0.0603137629401449 0.655383705883575 548 0.186891140183978 2 2 0 -7.09279266049222 LTS-017 chr4 84465805 84502671 36867 * GPAT3 NA 0 NA 0.843 1 NA NA NA NA NA LTS-017 chr4 84502672 87115513 2612842 * c(MIR4451, CDS1, WDFY3, WDFY3-AS2, NKX6-1, MAPK10, ARHGAP24, GPAT3) 0.155185682884066 20 0.0605431555521392 0.743278666815098 952 0.185433372429179 2 2 0 -6.86734208057811 LTS-017 chr4 87115514 87690998 575485 * c(MAPK10, PTPN13) 0.22978803542608 3 0.0261533936612441 0.458616686259811 167 0.113265010930577 1 1 0 -6.73401036664016 LTS-017 chr4 87690999 87706506 15508 * PTPN13 0.386 1 NA 0.421245296484039 57 0.0913191029929038 1 1 0 -5.77210502701634 LTS-017 chr4 87706507 88116842 410336 * c(LOC100506746, C4orf36, SLC10A6, AFF1, KLHL8, PTPN13) 0.34 1 NA 0.473931693781724 496 0.120952006173226 1 1 0 -5.7846612752081 LTS-017 chr4 88116843 88224922 108080 * c(MIR5705, KLHL8) NA 0 NA 0.592 1 NA NA NA NA NA LTS-017 chr4 88224923 90875529 2650607 * c(PYURF, FAM13A, PPM1K, TIGD2, DMP1, DSPP, MMRN1, NAP1L5, FAM13A-AS1, GPRIN3, IBSP, HSD17B13, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MEPE, SNCA-AS1, SNCA, SPP1, SPARCL1, HERC3, ABCG2) 0.440367161952144 40 0.0812310688004383 0.678654009073417 2020 0.748575446641278 2 1 1 -6.73726546992055 LTS-017 chr4 90875530 95588274 4712745 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, SMARCAD1) 0.440151853624735 23 0.0319395426916507 0.74580901756612 846 0.244547473191372 2 1 1 -6.88658120490478 LTS-017 chr4 95588275 95589407 1133 * PDLIM5 NA 0 NA 0.750089661825002 23 0.135636502717982 2 NA NA -5.76455709991298 LTS-017 chr4 95589408 95972829 383422 * BMPR1B NA 0 NA 0.898 1 NA NA NA NA NA LTS-017 chr4 95972830 96073956 101127 * BMPR1B 0.362 1 NA 1.0497980772582 47 0.17352757327411 3 3 0 -5.78415406733903 LTS-017 chr4 96073957 98109018 2035062 * c(PDHA2, BMPR1B, UNC5C) 0.347512036716167 21 0.0456422423388059 1.02451142892365 463 0.304389393081916 3 2 1 -6.94115004395446 LTS-017 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.767 1 NA NA NA NA NA LTS-017 chr4 98480011 104061623 5581613 * c(MIR3684, LOC100507053, LINC01216, TSPAN5, CENPE, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, EIF4E, METAP1, LOC256880, DAPP1, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, BANK1, PPP3CA, BDH2, RAP1GDS1, SLC39A8, UBE2D3, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.344618559602867 54 0.0761379201128158 0.901065861516131 2966 0.522259517527967 3 2 1 -6.83121053079878 LTS-017 chr4 104061624 104061920 297 * CENPE NA 0 NA 1.49 1 NA NA NA NA NA LTS-017 chr4 104061921 120422449 16360529 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, C4orf32, TRAM1L1, SGMS2, SYNPO2, EGF, ENPEP, FABP2, NPNT, PPA2, DKK2, RPL34-AS1, ANK2, HADH, CFI, LRIT3, LINC01061, C4orf3, MIR302B, LEF1, LARP7, MYOZ2, PITX2, GAR1, USP53, TET2, ARHGEF38, MCUB, ZGRF1, AP1AR, INTS12, METTL14, OSTC, RPL34, NEUROG2, LEF1-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, NA NA NA NA NA NA NA NA NA LTS-017 UGT8, ELOVL6, ARSJ, GSTCD, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, COL25A1, PRSS12, PDE5A, PAPSS1, AIMP1, TIFA, NDST3, TBCK, SEC24D) 0.340475649933196 124 0.0869298030045306 0.952779816424275 6681 0.25958380902991 3 2 1 -6.79958589630565 LTS-017 NA NA NA NA LTS-017 chr4 120422450 120423714 1265 * PDE5A NA 0 NA 0.791 1 NA NA NA NA NA LTS-017 chr4 120423715 190981476 70557762 * c(SCOC-AS1, CLDN24, PP12613, MIR2054, MIR1305, MIR3140, MIR4276, MIR3945, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, MIR4799, MIR3688-2, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZFP42, SPATA4, ENPP6, CPE, ASB5, CTSO, ZNF827, SH3D19, MGAT4D, WWC2-AS2, NA NA NA NA NA NA NA NA NA LTS-017 FAM218A, C4orf45, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, AGA, EDNRA, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, PRIMPOL, TRIML2, ETFDH, F11, ACSL1, FAT1, FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, KIAA0922, TRIM2, ANP32C, SLC7A11, FRG1, GAB1, ELMOD2, CCDC110, MFSD8, NOCT, FAM149A, FBXO8, GK3P, INTU, ARFIP1, PDLIM3, ZNF330, GLRB, GPM6A, LINC01091, CYP4V2, F11-AS1, LINC01098, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RNF175, GRIA2, SLC25A4, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, ANXA5, HMGB2, HPGD, LOC339975, TRIML1, LOC340017, PRSS48, ANKRD37, IL2, IL15, ING2, IRF2, KLKB1, LOC389247, TRIM61, HELT, LINC01060, FAM92A1P2, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, C4orf47, GALNTL6, MTNR1A, NDUFC1, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, GATB, PLRG1, CLDN22, EXOSC9, PCDH18, DKFZP434I0714, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 POU4F2, OTUD4, DCHS2, PPID, HPF1, MARCH1, LARP1B, BBS7, NEIL3, FBXW7, TMEM144, TMA16, UFSP2, MAML3, DDX60, CDKN2AIP, TENM3, TMEM184C, LRP2BP, PDGFC, FSTL5, STOX2, ANKRD50, RNF150, PCDH10, CFAP97, FNIP2, SH3RF1, IL21, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPS3A, MSMO1, SLC7A11-AS1, LINC00616, SFRP2, SLED1, HHIP, TNRC18P1, HHIP-AS1, C4orf51, FLJ38576, MIR578, TDO2, TLL1, TLR2, TLR3, TRPC3, LINC00290, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LOC728175, CETN4P, FAM160A1, MIR3945HG, UCP1, VEGFC, NDNF, FAT4, ARHGAP10, CENPU, HAND2-AS1, MAP9, TNIP3, JADE1, GLRA3, WWC2, NAA15, ABHD18, CEP44, SETD7, SLC25A31, RAB33B, CASP3, SNX25, TTC29, MND1, SLC10A7, TKTL2, QRFPR, KIAA1109, USP38, SMARCA5, SORBS2, MGARP, CBR4, FHDC1, PDE5A, SAP30, INPP4B, CCNA2, SNORD73A, LOC90768, PRMT9, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L, LRBA) 0.345559730011674 364 0.0949031855513631 0.91963871874818 22630 0.432938719571154 3 2 1 -7.01023714011366 LTS-017 NA NA NA NA LTS-017 chr4 190981477 190981567 91 * character(0) NA 0 NA 1.639 1 NA NA NA NA NA LTS-017 chr5 140347 171298 30952 * PLEKHG4B 0.427 1 NA 0.689152524660006 89 0.135950684480908 2 2 0 -5.76488043424508 LTS-017 chr5 171299 712144 540846 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.42685594639355 64 0.0706369669591672 0.686359413333587 1005 0.182257076585441 2 1 1 -6.75542699331985 LTS-017 chr5 712145 716871 4727 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-017 chr5 716872 796495 79624 * ZDHHC11 0.38341500702207 17 0.0628111665793498 1.1392578142106 90 0.347809075584115 3 2 1 -6.77550244410734 LTS-017 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 0.65 1 NA NA NA NA NA LTS-017 chr5 801171 7306654 6505484 * c(MIR4277, MIR4278, LOC100506688, MIR4454, MIR4457, MIR4635, SLC12A7, PAPD7, UBE2QL1, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, LINC01019, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, NDUFS6, IRX4, NSUN2, MRPL36, SLC6A3, BRD9, SRD5A1, TERT, SDHAP3, LOC728613, IRX1, ZDHHC11, LPCAT1, CLPTM1L, MED10, NKD2, TRIP13) 0.420034790541293 69 0.0906689358323935 0.713998926981687 2400 0.248127796166288 2 1 1 -6.76953746933035 LTS-017 chr5 7306655 7396380 89726 * c(ADCY2, LOC442132) NA 0 NA 1.013 1 NA NA NA NA NA LTS-017 chr5 7396381 7802363 405983 * ADCY2 0.418 2 0 0.937088622381212 106 0.191030239441174 0 0 0 -Inf LTS-017 chr5 7802364 7828404 26041 * ADCY2 0.333 1 NA 1.00828854513215 55 0.216065049751008 3 3 0 -5.76556729221084 LTS-017 chr5 7828405 34829999 27001595 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4637, MIR4636, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, ADCY2, SUB1, C1QTNF3, C5orf49, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, PDZD2, FBXL7, AMACR, RAI14, LOC285692, LOC285696, DROSHA, LOC340107, LOC340113, LOC401177, LINC01194, MARCH11, MTRR, MYO10, NPR3, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NA NA NA NA NA NA NA NA NA LTS-017 C5orf22, ANKH, PRDM9, GOLPH3, LINC01021, ANKRD33B, TARS, TRIO, GUSBP1, LOC729506, LSP1P3, FASTKD3, ADAMTS12, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.349242792849963 103 0.0931028438841203 0.966644578794638 6022 0.373170715866456 3 2 1 -6.7931177277571 LTS-017 NA NA NA NA LTS-017 chr5 34830000 34830683 684 * RAI14 NA 0 NA 1.232 1 NA NA NA NA NA LTS-017 chr5 34830684 34949857 119174 * c(DNAJC21, TTC23L, RAI14, BRIX1, RAD1) 0.445191298383373 3 0.0191398362932741 1.18729898124082 300 0.316534327947587 4 2 2 -6.80791418453601 LTS-017 chr5 34949858 34950299 442 * DNAJC21 NA 0 NA 0.938 1 NA NA NA NA NA LTS-017 chr5 34950300 39118929 4168630 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, UGT3A2, RANBP3L, RICTOR, FYB, NIPBL, GDNF, IL7R, LIFR, WDR70, PRLR, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, MIR580, SPEF2, OSMR, LMBRD2, NUP155) 0.369546041988302 74 0.0834308092131039 0.947496933909277 3682 0.267843570567349 3 2 1 -6.73342888134343 LTS-017 chr5 39118930 39119028 99 * FYB NA 0 NA 0.911 1 NA NA NA NA NA LTS-017 chr5 39119029 41941479 2822451 * c(LOC100506548, MROH2B, DAB2, TTC33, FYB, FBXO4, C5orf51, PLCXD3, OXCT1, PRKAA1, PTGER4, RPL37, SNORD72, C6, C7, C9, CARD6) 0.374636518074323 35 0.0469514678805088 0.880506628894185 1706 0.357271879426729 3 2 1 -6.81744453986882 LTS-017 chr5 41941480 41941577 98 * FBXO4 NA 0 NA 1.711 1 NA NA NA NA NA LTS-017 chr5 41941578 43706676 1765099 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, LOC153684, NIM1K, NNT, FBXO4, GHR, HMGCS1, C5orf34, ANXA2R, CCL28, SELENOP, TMEM267, LOC648987, ZNF131) 0.329459638805915 25 0.106495023357902 1.60798471655641 970 0.471602755742117 6 4 2 -6.77573052397679 LTS-017 chr5 44303628 44809162 505535 * c(MRPS30, FGF10) 0.442309297361976 5 0.0539240206216116 1.07010209199007 65 0.218672984244651 4 2 2 -6.8150324156542 LTS-017 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.987081718561543 149 0.204698381192508 3 NA NA -5.78226781762547 LTS-017 chr5 49692017 49694583 2567 * EMB 0.372 1 NA 0.894394965214812 45 0.282961979456926 3 3 0 -5.76448181440574 LTS-017 chr5 49694584 54830502 5135919 * c(MIR449C, MIR5687, CCNO, FST, ESM1, SNX18, EMB, CDC20B, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ISL1, ITGA1, ITGA2, RNF138P1, MOCS2, NDUFS4, GPX8, PELO, DHX29, ARL15, MIR449A, LOC642366, MIR449B, MIR581, PARP8, PLPP1, HSPB3) 0.392954276538166 39 0.0606151439948093 0.872033150989709 2057 0.233784639870378 3 2 1 -7.21567374674816 LTS-017 chr5 54830503 54830888 386 * PLPP1 NA 0 NA 0.994153262954861 7 0.0743521223317673 3 NA NA -5.76449358121993 LTS-017 chr5 54830889 54921666 90778 * PLPP1 NA 0 NA 0.485 1 NA NA NA NA NA LTS-017 chr5 54921667 54922172 506 * SLC38A9 0.155 1 NA 0.453991033692469 13 0.215329383944095 1 1 0 -5.76441057814175 LTS-017 chr5 54922173 69373289 14451117 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, PLK2, ADAMTS6, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CCDC125, GAPT, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, ACTBL2, IL6ST, TRIM23, MAST4, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, IPO11, PDE4D, PIK3R1, DDX4, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, GUSBP3, NA NA NA NA NA NA NA NA NA LTS-017 SMN1, SMN2, TAF9, GTF2H2C, ANKRD55, ELOVL7, TRAPPC13, SERF1A, CCNB1, NDUFAF2, MRPS36) 0.149171638197436 117 0.0569738772928551 0.700151963779525 6222 0.266539615850571 2 2 0 -6.73726854208468 LTS-017 NA NA NA NA LTS-017 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.002 1 NA NA NA NA NA LTS-017 chr5 69717474 70308346 590873 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.367718675759356 50 0.177615356019342 1 NA NA -6.26007688755912 LTS-017 chr5 70308347 70388996 80650 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.258347560584345 39 0.204230642156562 0 NA NA -5.81100115353382 LTS-017 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.628 1 NA NA NA NA NA LTS-017 chr5 70751404 92929992 22178589 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, NA NA NA NA NA NA NA NA NA LTS-017 RNU5E-1, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SCAMP1, CARTPT, ZFYVE16) 0.150066256963788 206 0.0506614400312344 0.704250975222298 9965 0.316238285467776 2 2 0 -6.73303030260858 LTS-017 NA NA NA NA LTS-017 chr5 92929993 96369079 3439087 * c(MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.139928716173475 45 0.066554693844441 0.664930060773882 2481 0.179678461869172 2 2 0 -6.95044035748886 LTS-017 chr5 96369080 96371042 1963 * character(0) NA 0 NA 1.14301399530254 40 0.336095133052442 4 NA NA -5.76443247746012 LTS-017 chr5 96371043 100147209 3776167 * c(LOC100133050, LOC100289230, CHD1, LIX1, RGMB, FAM174A, RGMB-AS1, RIOK2, ST8SIA4) 0.132792869925343 11 0.0798664794857927 0.706396939077895 649 0.285714084877322 2 2 0 -6.76109466156241 LTS-017 chr5 100147210 100221046 73837 * ST8SIA4 0.25 1 NA 0.679538017457261 27 0.118571026473959 2 2 0 -5.76842017618669 LTS-017 chr5 100221047 100238918 17872 * ST8SIA4 0.205294015136891 3 0.0460144904712997 0.664618938882498 47 0.199305635533034 1 1 0 -6.94912863293779 LTS-017 chr5 100238919 118965554 18726636 * c(LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, APC, HSD17B4, FAM170A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NA NA NA NA NA NA NA NA NA LTS-017 NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.204348233451264 105 0.0684759817254201 0.560872903711099 5900 0.168069535442662 1 1 0 -12.4243700500329 LTS-017 NA NA NA NA LTS-017 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 0.697 1 NA NA NA NA NA LTS-017 chr5 118968368 130495374 11527007 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, HINT1, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.196225870443284 81 0.0572149644804034 0.601445056319136 3299 0.1937625323068 2 2 0 -9.88345723276891 LTS-017 chr5 130495375 130496377 1003 * HINT1 NA 0 NA 0.5 1 NA NA NA NA NA LTS-017 chr5 130496378 133509752 3013375 * c(MIR1289-2, MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, FSTL4, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, IL3, IL4, IL5, IL13, IRF1, C5orf56, RAPGEF6, ZCCHC10, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, VDAC1, PDLIM4, P4HA2, LYRM7, FNIP1) 0.179708264337857 53 0.0617314458589579 0.55885479513865 3239 0.196605918241525 1 1 0 -8.56723883829307 LTS-017 chr5 133509753 133747671 237919 * c(MIR3661, CDKL3, PPP2CA, SKP1, UBE2B, CDKN2AIPNL) NA 0 NA 0.538882358484551 301 0.126258495059742 1 NA NA -5.99385947392448 LTS-017 chr5 133747672 133861305 113634 * JADE2 NA 0 NA 0.901 1 NA NA NA NA NA LTS-017 chr5 133861306 133887780 26475 * JADE2 0.457 1 NA 0.85784771263479 15 0.152080555095302 3 3 0 -5.77165592438418 LTS-017 chr5 133887781 138784865 4897085 * c(VTRNA2-1, MIR874, MIR4461, C5orf66, KIF20A, SEC24A, BRD8, HNRNPA0, C5orf24, DCANP1, CTNNA1, SLC25A48, EGR1, SPATA24, DNAJC18, ETF1, JADE2, LRRTM2, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, PROB1, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, SAR1B, MZB1, PAIP2, FAM13B, FAM53C, REEP2, KDM3B, PITX1, TRPC7, ECSCR, SIL1, SPOCK1, TGFBI, SNHG4, WNT8A, NA NA NA NA NA NA NA NA NA LTS-017 TXNDC15, CAMLG, NME5, PCBD2, CDC23, MYOT, CXCL14, H2AFY, SMAD5-AS1, MATR3, DDX46, CDC25C, SLC23A1) 0.416525968316494 77 0.0824510418332287 0.821278155375447 4648 0.203694997639375 2 1 1 -8.10532834698207 LTS-017 NA NA NA NA LTS-017 chr5 138784866 138837092 52227 * ECSCR NA 0 NA 1.479 1 NA NA NA NA NA LTS-017 chr5 138837093 138861327 24235 * c(TMEM173, ECSCR) 0.307446446007633 5 0.0538609320379809 1.19576782716228 68 0.250201613173089 4 3 1 -6.76964795016644 LTS-017 chr5 138861328 138940711 79384 * TMEM173 NA 0 NA 0.621 1 NA NA NA NA NA LTS-017 chr5 138940712 140553623 1612912 * c(SRA1, LINC01024, APBB3, SLC35A4, ZMAT2, HBEGF, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, CXXC5, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NA NA NA NA NA NA NA NA NA LTS-017 NRG2, PCDHA9) 0.423881432553582 59 0.0512490851795018 0.811820889199443 2860 0.172820788121192 2 1 1 -7.37319968496381 LTS-017 NA NA NA NA LTS-017 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.348 1 NA NA NA NA NA LTS-017 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.337 1 NA 0.424272699471206 60 0.12078818365525 1 1 0 -5.76540720747968 LTS-017 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.698 1 NA NA NA NA NA LTS-017 chr5 140559822 156184640 15624819 * c(GNPDA1, MIR3141, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, SLC36A1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, LARP1, GEMIN5, PCDHGA12, CCDC69, IL17B, GLRA1, GM2A, NA NA NA NA NA NA NA NA NA LTS-017 RELL2, SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, ANXA6, NDST1, HTR4, ARSI, IRGM, SAP30L-AS1, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, NMUR2, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SGCD, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, SAP30L, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, CNOT8, HAND1, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.422223524093458 269 0.0690073266014126 0.827040825246436 12747 0.190792797957817 3 2 1 -10.0078853816793 LTS-017 NA NA NA NA LTS-017 chr5 156184641 170410211 14225571 * c(FAM196B, C5orf52, MIR103B1, MIR3142, MIR378E, SLU7, SOX30, PWWP2A, C1QTNF2, C5orf58, LSM11, NUDCD2, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, DOCK2, EBF1, FABP6, FOXI1, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, HAVCR1, CYFIP2, MAT2B, LOC285626, LOC285627, LOC285629, KCNIP1, HMMR, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, SPDL1, THG1L, TENM2, NA NA NA NA NA NA NA NA NA LTS-017 RARS, ZBED8, SGCD, RANBP17, SLIT3, MIR585, TTC1, CCNJL, PANK3, HAVCR2, ADAM19, CCNG1, TIMD4, PTTG1, MED7, CLINT1) 0.415188548155354 131 0.0821115299274995 0.774239914436596 5656 0.205772736744171 2 1 1 -8.19740824886284 LTS-017 NA NA NA NA LTS-017 chr5 170410212 170455830 45619 * RANBP17 NA 0 NA 1.577 1 NA NA NA NA NA LTS-017 chr5 170455831 170739290 283460 * c(TLX3, RANBP17) NA 0 NA 1.05070997897249 134 0.267593330123459 3 NA NA -5.78807676548024 LTS-017 chr5 170739291 172756382 2017092 * c(LOC100268168, MIR3912, NKX2-5, CREBRF, DUSP1, FBXW11, EFCAB9, SH3PXD2B, NPM1, RPL26L1, NEURL1B, ERGIC1, BNIP1, SNORA74B, STK10, STC2, FGF18, ATP6V0E1, UBTD2) 0.382351382130764 12 0.0674605945584666 0.782252117241338 1618 0.218134927586994 2 1 1 -7.38931979696986 LTS-017 chr5 172756383 175386658 2630276 * c(MIR4634, CPLX2, C5orf47, DRD1, LOC285593, HRH2, FLJ16171, MSX2, HMP19, CPEB4, THOC3, STC2, BOD1, SFXN1) 0.44848836268167 16 0.0497295602903008 0.703374827892827 772 0.190718570989021 2 1 1 -6.75773592217593 LTS-017 chr5 175386659 175392041 5383 * THOC3 NA 0 NA 0.285800858856038 72 0.26507128953694 0 NA NA -5.768603548555 LTS-017 chr5 175392042 178772398 3380357 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, ZNF354B, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, N4BP3, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, PRR7-AS1, PFN3, ZNF879, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, NHP2, PROP1, KIAA1191, CLK4, LOC643201, NSD1, GMCL1P1, RMND5B, FAM153C, SLC34A1, SNCB, NA NA NA NA NA NA NA NA NA LTS-017 ZNF354A, LOC728554, AACSP1, DOK3, ZFP2, PRR7, MXD3, THOC3, PHYKPL, UNC5A, COL23A1, PDLIM7, ADAMTS2) 0.442784763776878 75 0.053727876234639 0.676733090538273 4865 0.1756342450867 2 1 1 -6.83953457245315 LTS-017 NA NA NA NA LTS-017 chr5 178772399 178949418 177020 * ADAMTS2 NA 0 NA 1.038 1 NA NA NA NA NA LTS-017 chr5 178949419 180488260 1538842 * c(MIR1229, HEIH, BTNL3, MGAT4B, OR2Y1, BTNL9, TBC1D9B, FLT4, RASGEF1C, C5orf60, HNRNPH1, LTC4S, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CNOT6, ZFP62, CBY3, LINC00847, BTNL8, RUFY1, CANX, SQSTM1, SCGB3A1, MAML1, GFPT2) 0.416151035106708 58 0.0439126890422708 0.793102532378252 2316 0.263154039104725 2 1 1 -7.06576010837368 LTS-017 chr5 180488261 180688111 199851 * c(MIR4638, RACK1, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.843203499100411 381 0.147362913460519 3 NA NA -5.84288139218749 LTS-017 chr6 203389 335251 131863 * DUSP22 0.362 1 NA 1.0750128388797 33 0.12444526909449 4 4 0 -5.82302423191124 LTS-017 chr6 335252 367462 32211 * DUSP22 0.325688001960061 8 0.0284152876358585 0.954744159086027 84 0.240065592430405 7 5 2 -7.09554041149262 LTS-017 chr6 367463 367481 19 * character(0) 0.228 1 NA 2.72 1 NA NA NA NA NA LTS-017 chr6 367482 408373 40892 * IRF4 0.458 1 NA 1.1978418808495 73 0.316050052150338 4 4 0 -5.76441020898606 LTS-017 chr6 408374 27371377 26963004 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, NA NA NA NA NA NA NA NA NA LTS-017 F13A1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, GUSBP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TPMT, TUBB2A, HULC, NBAT1, ZNF204P, DEK, ALDH5A1, ZNF322, TXNDC5, C6orf62, TMEM14B, HIST1H4I, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, RIOK1, DTNBP1, CMAHP, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, KIAA0319, NUP153) 0.451296596784562 411 0.0619962159605304 1.21348276614055 12880 0.408110543026746 4 2 2 -6.77663511135199 LTS-017 NA NA NA NA LTS-017 chr6 27371378 27926056 554679 * c(LOC100131289, LINC01012, OR2B6, HIST1H1B, ZNF184, OR2B2, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L) 0.415541193225359 5 0.0862832544587882 1.02821862928932 331 0.211107987108498 4 2 2 -6.9428719404873 LTS-017 chr6 27926057 28053262 127206 * ZNF165 NA 0 NA 1.322 1 NA NA NA NA NA LTS-017 chr6 28053263 29857424 1804162 * c(ZSCAN16-AS1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, PGBD1, ZSCAN12) 0.447998074592199 104 0.0787753912501669 1.21360240385136 2206 1.28994495207907 4 2 2 -6.74206400560775 LTS-017 chr6 29857425 29857502 78 * character(0) 0.135 1 NA 1.12408894174413 2 0.0339411254969543 4 4 0 -5.76456929629451 LTS-017 chr6 29857503 29912188 54686 * character(0) 0.387926928142001 28 0.0780288238697557 0.888996202818271 61 0.453929263765548 3 2 1 -6.76725359871343 LTS-017 chr6 29912189 29912333 145 * character(0) 0.457 1 NA 1.23172717190762 3 0.264205097099457 4 4 0 -5.7644111362046 LTS-017 chr6 29912334 30231114 318781 * character(0) 0.460915263919567 33 0.0387428145830705 1.21726791816472 607 0.264192609590605 4 2 2 -6.93005553846615 LTS-017 chr6 30231115 30313029 81915 * character(0) 0.462 1 NA 0.975473614586896 93 0.160512713607198 3 3 0 -5.76567180207083 LTS-017 chr6 30313030 30313124 95 * character(0) NA 0 NA 1.213 1 NA NA NA NA NA LTS-017 chr6 30313125 31371342 1058218 * character(0) 0.444913282972551 167 0.0482978630232623 1.25702366942207 2618 0.802996549496563 4 2 2 -6.74629881427629 LTS-017 chr6 31371343 31378387 7045 * character(0) 0.053 1 NA 1.36991451893436 5 0.310238617841171 5 5 0 -5.76453086201295 LTS-017 chr6 31378388 31379823 1436 * character(0) 0.358193262717836 10 0.12252840940415 1.13730214314048 24 0.257973368892936 6 4 2 -6.73586988085715 LTS-017 chr6 31379824 31382882 3059 * character(0) 0.409 1 NA 1.02713653139965 15 0.227041804415797 3 3 0 -5.76462296110054 LTS-017 chr6 31382883 31687107 304225 * character(0) 0.452869961493833 59 0.0417450305367935 1.26827148931596 1353 0.293142468495382 4 2 2 -6.81143020824053 LTS-017 chr6 31687108 31687151 44 * character(0) NA 0 NA 1.187 1 NA NA NA NA NA LTS-017 chr6 31687152 31704175 17024 * character(0) 0.430155930726713 5 0.0395815613638472 1.06907623865168 154 0.207257139357819 4 2 2 -6.76192371855693 LTS-017 chr6 31704176 31708147 3972 * character(0) 0.376 1 NA 0.942463036813947 9 0.236162020655312 3 3 0 -5.76441337280918 LTS-017 chr6 31708148 32498118 789971 * HLA-DRB5 0.356323770573116 136 0.0664517315445755 1.04774571884467 3139 0.297739203701808 3 2 1 -6.80638780447341 LTS-017 chr6 32498119 32552085 53967 * HLA-DRB5 0.350089566074459 36 0.0822589214537254 1.52883454812853 90 1.46569610298047 6 4 2 -6.73433042771407 LTS-017 chr6 32552086 32557414 5329 * HLA-DRB5 0.211 1 NA 1.03065329746632 5 0.72011436591697 3 3 0 -5.76445032691782 LTS-017 chr6 32557415 32709204 151790 * c(HLA-DQA1, HLA-DRB5) 0.293134830184867 63 0.0657872215961856 1.4652078563077 187 0.96802775797518 4 3 1 -6.73712289611666 LTS-017 chr6 32709205 32709235 31 * character(0) NA 0 NA 1.091 1 NA NA NA NA NA LTS-017 chr6 32709236 32713888 4653 * character(0) 0.340464825226752 4 0.0400530897684561 1.00910546770264 20 0.294901303739689 9 6 3 -6.77596253312328 LTS-017 chr6 32713889 32714143 255 * character(0) 0.464 1 NA 1.05581649960711 5 0.219898840378934 3 3 0 -5.76444479329951 LTS-017 chr6 32714144 32731376 17233 * character(0) 0.430764343405575 15 0.0485943363346957 1.04868756289714 62 0.271858011999876 4 2 2 -6.75021888693287 LTS-017 chr6 32731377 32732484 1108 * character(0) NA 0 NA 0.792 1 NA NA NA NA NA LTS-017 chr6 32732485 33035512 303028 * character(0) 0.452637713005168 31 0.0536152161037281 0.730426146640626 700 0.370986327914781 2 1 1 -6.77686981130091 LTS-017 chr6 33035513 33053695 18183 * character(0) 0.402484371051866 61 0.0840798865508534 0.978052013592442 153 2.24730808222905 10 6 4 -6.73535718444153 LTS-017 chr6 33053696 33053723 28 * character(0) 0.365 1 NA 1.482 1 NA NA NA NA NA LTS-017 chr6 33053724 33054575 852 * character(0) 0.33759906912462 19 0.0655712192605997 1.6711153281405 50 14.0226600029563 18 12 6 -6.73432239915145 LTS-017 chr6 33054576 33054579 4 * character(0) 0.379 1 NA 0.803 1 NA NA NA NA NA LTS-017 chr6 33054580 50811450 17756871 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4647, MIR4641, MIR4642, MIR4462, MIR5690, RCAN2, CDKN1A, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, NUDT3, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, IP6K3, CLPS, TAF8, C6orf141, MAPK14, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, FANCE, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, NA NA NA NA NA NA NA NA NA LTS-017 ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, ADGRF2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, ENPP4, FKBP5, CMTR1, CUL9, ANKS1A, UBR2, DAAM2, GLTSCR1L, CD2AP, MTCH1, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, SPDEF, YIPF3, USP49, MDGA1, ADGRF1, BRPF3, GNMT, TNFRSF21, GLO1, GLP1R, LOC285847, PNPLA1, TREML4, RPL7L1, GRM4, GUCA1A, GUCA1B, PRICKLE4, PACSIN1, HMGA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 HSP90AB1, CLPSL1, TREML1, TREML3P, SLC35B2, ITPR3, CLPSL2, C6orf222, GLYATL3, LINC00336, RAB44, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MLN, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, GGNBP1, MUT, RPL10A, NFKBIE, NFYA, DEF6, MRPL2, CYP39A1, ETV7, PPIL1, PEX6, PGC, PGK2, PIM1, CLIC5, TREM2, TREM1, POLH, PPARD, GTPBP2, UHRF1BP1, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, MAPK13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LRFN2, AARS2, XPO5, PTK7, CPNE5, BAK1, ENPP5, PRPH2, RHAG, ZFAND3, RPS10, SRSF3, C6orf132, C6orf106, MRPL14, DLK2, SNRPC, SRF, SRPK1, TAF11, TBCC, MIR586, TCP11, TEAD3, TFAP2B, BYSL, CRISP2, TULP1, TDRG1, VEGFA, ZNF76, PLA2G7, TFEB, TREML2, TFAP2D, KCNK16, UQCC2, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ) 0.441026166351391 398 0.074033830017354 0.769244075156077 18074 0.330013069251497 2 1 1 -7.41353290781139 LTS-017 NA NA NA NA LTS-017 chr6 50811451 55039150 4227700 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, GSTA5, FAM83B, ICK, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, LRRC1, ELOVL5, RPS16P5, TFAP2B, LOC730101, GSTA7P, GCM1, PAQR8, MLIP, TRAM2) 0.437006886977449 51 0.0992895508196144 0.71835963760709 2360 0.180073638796225 2 1 1 -6.76387929484476 LTS-017 chr6 55039151 57246969 2207819 * c(BEND6, ZNF451, HCRTR2, GFRAL, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.390743188021267 41 0.055884931866793 0.953497665011254 1966 0.197801119683459 3 2 1 -6.81929726161331 LTS-017 chr6 57246970 57372361 125392 * PRIM2 0.324 1 NA 1.18826839744988 11 0.3715341902779 4 4 0 -5.76444058233605 LTS-017 chr6 57372362 57512678 140317 * PRIM2 0.34649614288963 34 0.0580580338464682 1.35690532236674 80 0.861080372320108 6 4 2 -6.74769771779197 LTS-017 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.880572809935993 19 0.160229769229592 3 NA NA -5.88978797270057 LTS-017 chr6 62390154 62390920 767 * KHDRBS2 0.354 1 NA 1.1651110857394 19 0.360538405056199 4 4 0 -5.76441274185299 LTS-017 chr6 62390921 74304236 11913316 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, EEF1A1, KHDRBS2, RIMS1, PHF3, MTO1, SLC17A5, DPPA5, EYS, NA, MIR30A, MIR30C2, LOC441155, OOEP, SLC25A51P1, LGSN, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.447788684429309 47 0.0487818683047364 1.1854248324789 3249 0.311559712019943 4 2 2 -6.76238800097237 LTS-017 chr6 74304237 76023206 1718970 * c(LOC100506804, COL12A1, COX7A2, CD109, SLC17A5, FILIP1, TMEM30A) 0.366658931032306 15 0.0474005224001753 0.951687426388587 855 0.30185248873326 3 2 1 -6.73510053386726 LTS-017 chr6 76023207 76427667 404461 * c(SENP6, FILIP1) 0.448625246350708 7 0.0233584898402925 1.21409515012017 283 0.335760677662246 4 2 2 -6.84651099417995 LTS-017 chr6 76427668 76782478 354811 * c(SENP6, IMPG1, MYO6) 0.359085807189315 2 0.110308657865101 1.00167998045816 325 0.243172240240435 3 2 1 -6.74811276415696 LTS-017 chr6 78171891 80228673 2056783 * c(HMGN3-AS1, IRAK1BP1, LCA5, HTR1B, PHIP, HMGN3) 0.443797180393869 8 0.0458693797647189 1.20394162107539 404 0.226257053875499 4 2 2 -6.7421215893528 LTS-017 chr6 80228674 80580169 351496 * c(LCA5, RNY4, SH3BGRL2, LINC01621) NA 0 NA 1.35909898035556 139 0.381632350521344 5 NA NA -5.76968134873109 LTS-017 chr6 80580170 80624532 44363 * ELOVL4 NA 0 NA 0.699 1 NA NA NA NA NA LTS-017 chr6 80624533 80624656 124 * ELOVL4 0.082 1 NA 0.958352413607979 3 0.785835436547203 3 3 0 -5.76441014232397 LTS-017 chr6 80624657 111303415 30678759 * c(LIN28B-AS1, TSTD3, MIR2113, LOC100422737, MIR4464, MIR4643, LOC100996634, SYNCRIP, SLC35A1, FUT9, CGA, PNRC1, ASCC3, BVES, SEC63, GTF3C6, MRAP2, RWDD2A, KLHL32, CNR1, RIPPLY2, PM20D2, SRSF12, CFAP206, BVES-AS1, PRSS35, AIM1, EPHA7, C6orf163, CCDC162P, AK9, CEP162, ANKRD6, DOPEY1, ZNF292, FOXO3, CDK19, MDN1, UFL1, ORC3, LACE1, MMS22L, SCML4, GABRR1, GABRR2, PNISR, IBTK, AMD1, FBXL4, SNORD50A, SESN1, NA NA NA NA NA NA NA NA NA LTS-017 GPR6, CEP57L1, PPIL6, OSTM1, GRIK2, NDUFAF4, HTR1E, GJB7, SNHG5, LINC00222, LIN28B, ME1, NT5E, CYB5R4, C6orf203, CDC40, UBE2J1, COQ3, PGM3, POU3F2, SOBP, AKIRIN2, QRSL1, PREP, FAM46A, RARS2, PDSS2, SMIM8, LYRM2, SNX14, HACE1, BEND3, RRAGD, PRDM13, BCKDHB, BACH2, PRDM1, LINC01590, POPDC3, TSG1, MICAL1, SIM1, SMPD2, ELOVL4, MAP3K7, SNORD50B, NR2E1, TPBG, TTK, MCHR2-AS1, METTL24, MANEA, GPR63, SPACA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ARMC2, RPF2, MCHR2, FAXC, GJA10, RTN4IP1, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, CCNC, WASF1, UBE3D, TBX18, FHL5, ATG5, ZBTB24, SNAP91, FIG4, CASP8AP2) 0.146706201824658 197 0.0615605442731702 0.712359131138723 12359 0.213639376384985 2 2 0 -6.78749264910126 LTS-017 NA NA NA NA LTS-017 chr6 111303416 112375335 1071920 * c(TRAF3IP2, SLC16A10, FYN, GSTM2P1, REV3L, TRAF3IP2-AS1, RPF2, WISP3, MFSD4B) 0.0731566644572047 3 0.0762364742101837 0.81482610976217 768 0.355082435666434 3 3 0 -6.99731282894905 LTS-017 chr6 112375336 121655649 9280314 * c(TRAPPC3L, LOC100287632, NUS1, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, BRD7P3, FRK, VGLL2, FAM26E, MCM9, ASF1A, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, RFPL4B, TUBE1, RWDD1, PLN, GOPC, ROS1, FAM229B, MIR548B, TSPYL1, TPI1P3, FAM184A, WISP3) 0.149700068635774 71 0.0562244603321173 0.68824360578969 3892 0.193641305904683 2 2 0 -6.81029822102978 LTS-017 chr6 121655650 121767902 112253 * GJA1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-017 chr6 121767903 127647717 5879815 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, HEY2, GJA1, HSF2, CENPW, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3) 0.145513093745253 33 0.0534514612720851 0.751780779667271 1914 0.214932766745475 2 2 0 -7.04686689046733 LTS-017 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.588 1 NA NA NA NA NA LTS-017 chr6 127648124 150157383 22509260 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, NA NA NA NA NA NA NA NA NA LTS-017 PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.15535138974808 192 0.0593830840918967 0.696876082150711 10820 0.272274167428274 2 2 0 -6.757836862722 LTS-017 NA NA NA NA LTS-017 chr6 150157384 150158518 1135 * LRP11 NA 0 NA 1.597 1 NA NA NA NA NA LTS-017 chr6 150158519 153309782 3151264 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.151545770719507 82 0.0504713524929055 0.753273146032635 2726 0.289718627337592 2 2 0 -6.83399111064152 LTS-017 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.304 1 NA NA NA NA NA LTS-017 chr6 153309882 153314084 4203 * MTRF1L NA 0 NA 0.407829494455507 39 0.209423890045996 1 NA NA -5.76517645429549 LTS-017 chr6 153314085 153314183 99 * MTRF1L NA 0 NA 0.649 1 NA NA NA NA NA LTS-017 chr6 153314184 167591984 14277801 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, MTRF1L, NA NA NA NA NA NA NA NA NA LTS-017 AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.153313693945218 142 0.0662452939244453 0.701457385376839 6480 0.571491849133804 2 2 0 -6.73491510240237 LTS-017 NA NA NA NA LTS-017 chr6 167591985 167595671 3687 * TCP10L2 NA 0 NA 0.387102946793756 88 0.30856587216677 1 NA NA -5.76506272435644 LTS-017 chr6 167595672 170891863 3296192 * c(HGC6.3, MIR4644, LOC154449, DACT2, WDR27, LINC01558, DLL1, KIF25, C6orf120, TCP10L2, LINC00242, AFDN, PDCD2, UNC93A, PHF10, ERMARD, PSMB1, SMOC2, AFDN-AS1, TBP, TCP10, TCTE3, THBS2, FRMD1, LINC00574, TTLL2, FAM120B) 0.190907684357134 65 0.0793146363445079 0.700778904897271 2072 0.345787481407384 2 2 0 -6.88875141530813 LTS-017 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.662120287866761 21 0.171619609824141 2 NA NA -5.76454446982781 LTS-017 chr7 193047 227987 34941 * FAM20C 0.19 1 NA 0.668682973680876 35 0.0970700431508657 2 2 0 -5.77037136816665 LTS-017 chr7 227988 5926027 5698040 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-017 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.14978037539605 202 0.054380541451037 0.727416400354707 5403 0.223712949267032 2 2 0 -6.80391186751919 LTS-017 NA NA NA NA LTS-017 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.516 1 NA NA NA NA NA LTS-017 chr7 5937950 5958596 20647 * CCZ1 NA 0 NA 0.482442499268228 47 0.0861615632757668 1 NA NA -5.76901386857432 LTS-017 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.245 1 NA NA NA NA NA LTS-017 chr7 5959444 5984747 25304 * c(RSPH10B, CCZ1) 0.342271236499415 2 0.243951839509359 1.02582270732154 51 0.508344306663945 3 2 1 -6.74079992496896 LTS-017 chr7 5984748 6777356 792609 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.161413671954358 43 0.073569367451695 0.674319537672178 1317 0.202024453543585 2 2 0 -6.76923588090486 LTS-017 chr7 6777357 6781336 3980 * PMS2CL NA 0 NA 0.345 1 NA NA NA NA NA LTS-017 chr7 6781337 6820532 39196 * c(PMS2CL, RSPH10B2) NA 0 NA 0.417012210361459 46 0.303275873678662 1 NA NA -5.76663025850745 LTS-017 chr7 6820533 6844723 24191 * c(CCZ1B, RSPH10B2) NA 0 NA 0.205347395325882 41 0.301640017239092 0 NA NA -5.76453899603855 LTS-017 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.3 1 NA NA NA NA NA LTS-017 chr7 6845571 6865911 20341 * CCZ1B 0.451623769821002 2 0.0360624458405139 1.11186727640704 40 0.419065773400665 4 2 2 -6.81314711324891 LTS-017 chr7 6865912 30634438 23768527 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, DKFZP586I1420, MTURN, NA NA NA NA NA NA NA NA NA LTS-017 PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, FKBP14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.163359878358746 250 0.058617427675643 0.699313603783928 9617 0.297085239662696 2 2 0 -6.77182737333149 LTS-017 NA NA NA NA LTS-017 chr7 30634439 30634556 118 * GARS NA 0 NA 0.973 1 NA NA NA NA NA LTS-017 chr7 30634557 32249094 1614538 * c(INMT-FAM188B, PPP1R17, INMT, ADCYAP1R1, CRHR2, CCDC129, GARS, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.154810826549762 32 0.0508303531208184 0.771357697250265 1290 0.223615820143461 2 2 0 -6.89480893918653 LTS-017 chr7 32249095 38309169 6060075 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, TBX20, RP9, HERPUD2, SFRP4, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7) 0.166726984756123 46 0.0822021779981093 0.687038250221571 2467 0.401350705168512 2 2 0 -6.77144762380138 LTS-017 chr7 38309170 38313075 3906 * TARP NA 0 NA 1.101 1 NA NA NA NA NA LTS-017 chr7 38313076 38398511 85436 * c(TRG-AS1, TARP) 0.108849659353492 4 0.0163171688720807 0.976162584744882 73 1.07740776549581 3 3 0 -6.7448276003637 LTS-017 chr7 38398512 38402481 3970 * TRG-AS1 NA 0 NA 0.752 1 NA NA NA NA NA LTS-017 chr7 38402482 48886413 10483932 * c(MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, YKT6, ADCY1, POU6F2, C7orf57, MPLKIP, ABCA13, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, SUN3, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, FAM183BP, IGFBP1, IGFBP3, LINC00265, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, YAE1D1, PURB, MYL7, NA NA NA NA NA NA NA NA NA LTS-017 RALA, MYO1G, SEPT7P2, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.143236906999648 102 0.0483325293314394 0.720271794819437 6390 0.316285291150602 2 2 0 -6.77659089457385 LTS-017 NA NA NA NA LTS-017 chr7 48886414 51140256 2253843 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, DDC, CDC14C, COBL, GRB10, VWC2, FIGNL1) 0.146628350431594 16 0.0727323575400477 0.648744216691828 854 0.198778204616754 2 2 0 -6.95637628568414 LTS-017 chr7 51140257 57531782 6391526 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, HPVC1, SEPT14, ZNF713, FKBP9P1, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.181159136529369 52 0.0723933031910272 0.708671940323848 1631 0.234962067431678 2 2 0 -6.84475463672578 LTS-017 chr7 57531783 57533232 1450 * ZNF716 NA 0 NA 0.843357247372693 23 0.290017588399441 3 NA NA -5.76455851056283 LTS-017 chr7 62758725 63356407 597683 * ZNF733P 0.409 1 NA 1.12537139668668 47 0.608802989875244 4 4 0 -5.76811008201046 LTS-017 chr7 63356408 63797377 440970 * c(LINC01005, ZNF679, ZNF727, ZNF736, ZNF735) 0.461372577389857 7 0.0380788655293195 1.11189866273786 128 0.450860559206974 4 2 2 -6.95111067799612 LTS-017 chr7 63797378 63808434 11057 * ZNF736 NA 0 NA 1.54 1 NA NA NA NA NA LTS-017 chr7 63808435 64639874 831440 * c(LOC100128885, ZNF273, ERV3-1, ZNF680, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF138) 0.435884975047435 7 0.0268070708511588 1.32637679066143 432 0.305939538327029 4 2 2 -6.79372010508189 LTS-017 chr7 64639875 64643339 3465 * character(0) NA 0 NA 1.062 1 NA NA NA NA NA LTS-017 chr7 64643340 65084068 440729 * ZNF92 NA 0 NA 0.862513671735834 81 0.1152366941517 3 NA NA -5.94743697776848 LTS-017 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 1.624 1 NA NA NA NA NA LTS-017 chr7 65150661 73927173 8776513 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, MIR590, NA NA NA NA NA NA NA NA NA LTS-017 GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.371828387573799 102 0.0768800502584525 1.46496562554774 3452 0.33491965101259 5 3 2 -6.88242317452311 LTS-017 NA NA NA NA LTS-017 chr7 73927174 75544455 1617282 * c(POM121C, CCL26, NSUN5P1, GTF2I, GTF2IP1, HIP1, TRIM73, NA, GTF2IRD2B, STAG3L2, SPDYE5, PMS2P5, PMS2P3, STAG3L1, POR, RHBDD2, CCL24, NCF1, NCF1C, GATSL2, RCC1L, GTF2IRD2, GTF2IRD1) 0.421952534837462 20 0.119928432606152 1.19165048769818 812 0.420316487844382 4 2 2 -6.74439699872704 LTS-017 chr7 75544456 75747117 202662 * c(MIR4651, MDH2, STYXL1, POR, SNORA14A, TMEM120A) NA 0 NA 1.19408569065554 273 0.21699097169722 4 NA NA -5.7644274661992 LTS-017 chr7 75747118 75806255 59138 * character(0) NA 0 NA 0.553 1 NA NA NA NA NA LTS-017 chr7 75806256 75957889 151634 * c(SRRM3, HSPB1, YWHAG) 0.138 1 NA 0.74408744815945 171 0.184781726774342 2 2 0 -5.77247724134413 LTS-017 chr7 75957890 82584592 6626703 * c(PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3C, FGL2, DTX2, SSC4D, RSBN1L, POMZP3, PCLO, GNAI1, HGF, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, CACNA2D1, UPK3B, TMEM60, CD36, MAGI2) 0.171191553096679 59 0.0758356331124206 0.706017702033674 2488 0.185853921754633 2 2 0 -6.78015581194442 LTS-017 chr7 82584593 84627053 2042461 * c(SEMA3A, SEMA3D, PCLO, SEMA3E) 0.129463537383042 13 0.0560451969624883 0.822763874634033 529 0.327272238397516 3 3 0 -7.02648000978199 LTS-017 chr7 84627054 90043314 5416261 * c(LOC101409256, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, SEMA3D, STEAP2, STEAP1, GRM3, DPY19L2P4, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, CFAP69, GTPBP10, CLDN12, DMTF1) 0.146085389315023 36 0.0451208870086177 0.703055225595845 2650 0.211292709788438 2 2 0 -6.73780102276636 LTS-017 chr7 90043315 90492621 449307 * c(CDK14, CLDN12) NA 0 NA 0.767516710423016 77 0.0992708206397293 2 NA NA -5.96047623710518 LTS-017 chr7 90492622 90528565 35944 * CDK14 NA 0 NA 1.435 1 NA NA NA NA NA LTS-017 chr7 90528566 91502535 973970 * c(CDK14, MTERF1, FZD1) 0.12 1 NA 1.18680163974487 163 0.229432061606435 4 4 0 -5.76525211612725 LTS-017 chr7 91502536 93625700 2123165 * c(MIR4652, AKAP9, CDK6, BET1, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.0926979561894177 32 0.0242460297714372 1.12274526440893 2262 0.269964717735065 4 4 0 -6.82422391805998 LTS-017 chr7 93625701 93628493 2793 * BET1 NA 0 NA 1.351 1 NA NA NA NA NA LTS-017 chr7 93628494 99697616 6069123 * c(GS1-259H13.2, MIR3609, LOC100506136, ATP5J2-PTCD1, CYP3A7-CYP3A51P, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, COPS6, PDAP1, COL1A2, CYP3A7, CYP3A4, CYP3A5, BHLHA15, DLX5, DLX6, DYNC1I1, ZSCAN25, FAM200A, TMEM130, LMTK2, PEG10, ZKSCAN5, BRI3, TECPR1, PTCD1, DLX6-AS1, ZNF789, GJC3, MGC72080, C7orf76, KPNA7, MIR106B, MIR25, MIR93, MCM7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, NA NA NA NA NA NA NA NA NA LTS-017 AZGP1, SDHAF3, SMURF1, AZGP1P1, CYP3A43, CASD1, TAC1, MIR591, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, SHFM1, OR2AE1, TRRAP, ZNF394, MYH16, BUD31, SGCE, TRIM4, ATP5J2) 0.0862455197166684 76 0.0315152177109475 1.19634874451872 5130 0.322548212468543 4 4 0 -6.73550270115204 LTS-017 NA NA NA NA LTS-017 chr7 99697617 99797024 99408 * c(MIR4658, STAG3, GPC2, CNPY4, MBLAC1, LAMTOR4, MCM7, C7orf43, TAF6, GAL3ST4, AP4M1) 0.07 1 NA 1.44889085826569 496 0.250241230170262 5 5 0 -5.76442258456517 LTS-017 chr7 99797025 99797257 233 * STAG3 NA 0 NA 1.124 1 NA NA NA NA NA LTS-017 chr7 99797258 100416250 618993 * c(PCOLCE-AS1, SAP25, POP7, STAG3, EPHB4, EPO, PPP1R35, NYAP1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, C7orf61, LRCH4, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, MEPCE, MOSPD3, GIGYF1, TFR2, ZAN, PVRIG, TSC22D4) 0.0887644622795081 29 0.0188559486112356 1.26105338773719 1867 3.18921323210143 4 4 0 -6.73355398876807 LTS-017 chr7 100416251 100547278 131028 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6) 0.298 1 NA 1.24916752884669 387 0.295869709782681 4 4 0 -5.76603229410197 LTS-017 chr7 100547279 100549499 2221 * character(0) 0.293 1 NA 1.30233041207179 5 0.577462293141292 4 4 0 -5.76443844290305 LTS-017 chr7 100549500 100549573 74 * character(0) 0.291 1 NA 3.32 1 NA NA NA NA NA LTS-017 chr7 100549574 100550504 931 * character(0) 0.371625163352652 29 0.084395503347167 2.24440123149183 54 0.780658799397131 11 7 4 -6.73314847622316 LTS-017 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.394 1 NA NA NA NA NA LTS-017 chr7 100550727 100551118 392 * character(0) 0.279239898385022 9 0.124849909891838 0.757000878319929 40 0.376709245664652 8 6 2 -6.73586100666667 LTS-017 chr7 100551119 100553077 1959 * character(0) 0.314713075432498 72 0.116710105092374 2.1416401417897 113 1.05747828839942 10 7 3 -6.73312552074492 LTS-017 chr7 100553078 100553079 2 * character(0) NA 0 NA 1.188 1 NA NA NA NA NA LTS-017 chr7 100553080 100677181 124102 * c(MUC12, MUC17) 0.346236318381342 24 0.146450460288934 1.34625898440719 258 0.953111009698626 6 4 2 -6.73882206924343 LTS-017 chr7 100677182 100677441 260 * MUC17 NA 0 NA 2.238 1 NA NA NA NA NA LTS-017 chr7 100677442 100679290 1849 * MUC17 0.336001778833725 17 0.0733954338217464 2.28539948494799 42 0.793700804030231 18 12 6 -6.73631150002869 LTS-017 chr7 100679291 100679406 116 * MUC17 NA 0 NA 1.171 1 NA NA NA NA NA LTS-017 chr7 100679407 100680261 855 * MUC17 0.43557333769321 5 0.0356609029610861 1.2290452594063 21 1.08351167396528 11 6 5 -6.73371094410864 LTS-017 chr7 100680262 100681510 1249 * MUC17 0.068 1 NA 0.916696985437068 37 0.740837626534242 3 3 0 -5.76441194492067 LTS-017 chr7 100681511 102136576 1455066 * c(RASA4B, LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.0828203880724935 35 0.0253138949454825 1.23438769762084 1823 0.328560435761347 4 4 0 -6.76819572908064 LTS-017 chr7 102136577 102136661 85 * RASA4B NA 0 NA 0.909 1 NA NA NA NA NA LTS-017 chr7 102136662 102449280 312619 * c(RASA4B, SPDYE2B, RASA4, FAM185A, POLR2J2, POLR2J3) 0.0378699531480769 3 0.0122882057274445 0.926873081088639 86 0.36946916703546 9 9 0 -7.91995666237703 LTS-017 chr7 102449281 102453555 4275 * c(FAM185A, FBXL13) NA 0 NA 1.125 1 NA NA NA NA NA LTS-017 chr7 102453556 115892569 13439014 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, LRRC17, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, PUS7, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, NA NA NA NA NA NA NA NA NA LTS-017 RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, ARMC10, IMMP2L, FOXP2, PMPCB, DOCK4) 0.100501482159216 80 0.0670405306748429 1.14813354238431 6189 0.281405756505793 4 4 0 -6.92606900013943 LTS-017 NA NA NA NA LTS-017 chr7 115892570 120388257 4495688 * c(CFTR, ASZ1, TES, ST7-OT4, KCND2, MET, LSM8, ANKRD7, WNT2, ST7, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.0871059734219249 24 0.0341937944620094 1.26026192605681 1455 0.421306616991417 4 4 0 -6.77351881988064 LTS-017 chr7 120388258 126078884 5690627 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, HYAL4, TSPAN12, POT1, HYALP1, GPR37, GRM8, KCND2, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, WNT16, ING3, PTPRZ1, SLC13A1, SPAM1, TMEM229A, CPED1, WASL, CADPS2) 0.100552150517027 40 0.0413993682597657 1.12947478100639 2316 0.323398203300789 4 4 0 -6.89410596089771 LTS-017 chr7 126078885 134890888 8812004 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, MGC27345, ZNF800, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, AGBL3, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NRF1, PAX4, CPA4, NA NA NA NA NA NA NA NA NA LTS-017 ZC3HC1, PODXL, CHCHD3, RBM28, TMEM140, METTL2B, AKR1B10, STRIP2, EXOC4, OPN1SW, LRRC4, NA, CCDC136, SMO, BPGM, MIR592, MIR593, UBE2H, C7orf49, GCC1, CALD1, CALU, FAM71F1, SLC35B4, TMEM209, PLXNA4, ATP6V1F, CPA5, CEP41) 0.0889691746027368 98 0.0303914862478949 1.1990849486603 6046 0.441913412750371 4 4 0 -6.73342256966436 LTS-017 NA NA NA NA LTS-017 chr7 134890889 134891804 916 * WDR91 NA 0 NA 0.773 1 NA NA NA NA NA LTS-017 chr7 134891805 142120072 7228268 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, MOXD2P, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, PRSS58, CLEC2L, FMC1, TMEM213, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, STRA8, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, C7orf73, PARP12, NA NA NA NA NA NA NA NA NA LTS-017 CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, NA, LUZP6, TTC26, KDM7A, SLC37A3, TRIM24, MGAM, ADCK2, DGKI, ZC3HAV1L, MGAM2) 0.114752641855851 90 0.0534209591490502 0.92955331150369 5924 0.255419554035575 3 3 0 -6.76924062302082 LTS-017 NA NA NA NA LTS-017 chr7 142120073 142120191 119 * character(0) NA 0 NA 1.333 1 NA NA NA NA NA LTS-017 chr7 142120192 142131885 11694 * character(0) 0.189828825148424 6 0.0743146463805532 1.2358682163418 26 0.422505697731267 7 6 1 -6.74786984993041 LTS-017 chr7 142131886 142139296 7411 * character(0) 0.235 1 NA 1.31267583590621 3 1.38867142742023 4 4 0 -5.76442968945167 LTS-017 chr7 142139297 142499047 359751 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.28053071898929 37 0.101990887539727 1.2925346174069 340 2.69767627774129 8 6 2 -6.74347746935349 LTS-017 chr7 142499048 142499487 440 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-017 chr7 142499488 142499836 349 * character(0) 0.22 1 NA 0.870235409030984 5 0.402548754811141 3 3 0 -5.76442021284723 LTS-017 chr7 142499837 142570064 70228 * c(EPHB6, TRPV6) 0.117 1 NA 0.969529906201368 147 0.189571952340411 3 3 0 -5.76486090506956 LTS-017 chr7 142570065 143305763 735699 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.116753353688029 9 0.0259957261444603 0.956813882863069 1170 0.201536065235787 3 3 0 -6.76135218259541 LTS-017 chr7 143305764 143306195 432 * character(0) NA 0 NA 1.288 1 NA NA NA NA NA LTS-017 chr7 143306196 143400402 94207 * c(LOC154761, TCAF2) NA 0 NA 1.9693637368685 49 2.18439679460773 7 NA NA -5.76441346469574 LTS-017 chr7 143400403 143425207 24805 * c(LOC154761, TCAF2) NA 0 NA 1.181 1 NA NA NA NA NA LTS-017 chr7 143425208 143840031 414824 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.110265134077649 12 0.0385088537635414 1.02422734860966 281 0.512476427297726 3 3 0 -6.73859127398345 LTS-017 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.386 1 NA NA NA NA NA LTS-017 chr7 143883365 143974096 90732 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.382503952512584 53 0.191609363134056 1 NA NA -5.8118489961093 LTS-017 chr7 143974097 143975446 1350 * ARHGEF34P NA 0 NA 2.668 1 NA NA NA NA NA LTS-017 chr7 143975447 144016241 40795 * ARHGEF34P 0.051 1 NA 0.7492270044628 46 0.704912833203836 2 2 0 -5.7645991321293 LTS-017 chr7 144016242 144061044 44803 * ARHGEF5 NA 0 NA 0.36 1 NA NA NA NA NA LTS-017 chr7 144061045 144072694 11650 * ARHGEF5 NA 0 NA 0.275967376971726 45 0.163331703764289 0 NA NA -5.78305169196113 LTS-017 chr7 144072695 144074199 1505 * ARHGEF5 NA 0 NA 0.722 1 NA NA NA NA NA LTS-017 chr7 144074200 149315661 5241462 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, C7orf33, EZH2, CNTNAP2, TPK1, ZNF777, ZNF398, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, PDIA4) 0.117611684951047 37 0.0443651413360283 0.944158734277908 1733 0.414294802781908 3 3 0 -6.74665626588826 LTS-017 chr7 149315662 149317094 1433 * ZNF767P NA 0 NA 1.064 1 NA NA NA NA NA LTS-017 chr7 149317095 149547477 230383 * c(ZNF467, SSPO, ZNF862, ZNF767P, KRBA1) 0.0839476049882348 17 0.0309313756564431 1.04652746413981 775 0.28436141648812 4 4 0 -6.77544504632617 LTS-017 chr7 149547478 149556422 8945 * ZNF862 NA 0 NA 0.63 1 NA NA NA NA NA LTS-017 chr7 149556423 149990080 433658 * c(ATP6V0E2, ATP6V0E2-AS1, ZNF862, ACTR3C) 0.0897197710388431 2 0.00141421356237311 0.684892224879957 332 0.213133631022773 4 4 0 -8.71245404370334 LTS-017 chr7 149990081 150093701 103621 * c(RNU6-34P, ZBED6CL, ZNF775, REPIN1, RARRES2, ACTR3C, LRRC61) 0.161 1 NA 0.718604084574823 243 0.133918164138613 2 2 0 -5.76582605380484 LTS-017 chr7 150093702 158827326 8733625 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, CDK5, FASTK, ABCB8, AGAP3, C7orf13, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, RBM33, GALNTL5, GIMAP7, GIMAP1, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, AOC1, GIMAP2, GBX1, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, MNX1, HTR5A, WDR86, INSIG1, KCNH2, MIR153-2, GIMAP6, NOS3, PRKAG2, NA NA NA NA NA NA NA NA NA LTS-017 NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, PTPRN2, KMT2C, RHEB, GALNT11, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, SMARCD3, MIR595, LOC728743, VIPR2, XRCC2, MIR671, TMUB1, ASIC3, UBE3C) 0.169926936104694 160 0.0588040929216634 0.707062414020527 6375 0.294514256367792 2 2 0 -6.80195931241551 LTS-017 NA NA NA NA LTS-017 chr7 158827327 159025951 198625 * VIPR2 NA 0 NA 0.681309012708821 75 0.0719820347957276 2 NA NA -5.78947781257365 LTS-017 chr8 182757 196274 13518 * ZNF596 0.401 1 NA 0.825558824922065 45 0.223205917973027 3 3 0 -5.76765129870145 LTS-017 chr8 196275 3038779 2842505 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.357550322227028 52 0.0753809705693811 0.889170304923806 1550 0.26151393746039 3 2 1 -6.85754207450856 LTS-017 chr8 3038780 3045300 6521 * CSMD1 NA 0 NA 1.046 1 NA NA NA NA NA LTS-017 chr8 3045301 6617103 3571803 * c(LOC100287015, MIR4659A, MIR4659B, ANGPT2, AGPAT5, CSMD1, MCPH1) 0.358033963592622 14 0.0503704954629872 0.98730334741679 572 0.254304328890177 3 2 1 -6.81053364361317 LTS-017 chr8 6617104 6668721 51618 * c(XKR5, AGPAT5) NA 0 NA 0.685 1 NA NA NA NA NA LTS-017 chr8 6668722 7320350 651629 * c(FAM66B, ZNF705G, DEFB4B, GS1-24F4.2, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.428468483268266 13 0.0369828442555568 0.844840460041309 163 0.676458500691929 2 1 1 -6.80408332073591 LTS-017 chr8 7320351 7698578 378228 * c(DEFB107A, FAM90A7P, FAM90A10P, DEFB107B) NA 0 NA 0.516016279003971 52 0.231452671979642 1 NA NA -5.82462348489765 LTS-017 chr8 7698579 7698677 99 * character(0) NA 0 NA 0.603 1 NA NA NA NA NA LTS-017 chr8 7698678 7752350 53673 * c(DEFB4A, SPAG11A) 0.471 1 NA 0.237631728414546 38 0.531073150632662 0 0 0 -5.76598870869668 LTS-017 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.677 1 NA NA NA NA NA LTS-017 chr8 8175295 8641829 466535 * c(CLDN23, SGK223) 0.364500786053545 14 0.190667825760456 0.720809274090861 182 0.32076776355885 2 1 1 -6.82328215172618 LTS-017 chr8 8641830 8747537 105708 * MFHAS1 0.481 1 NA 0.700667876511656 47 0.138463729692411 2 2 0 -5.76449498153102 LTS-017 chr8 8747538 40012063 31264526 * c(NAT2, RBPMS-AS1, LOC100128993, LOC100130964, FAM66D, FAM66A, MIR1322, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, SMIM18, MIR548O2, MIR4660, LZTS1-AS1, NRG1-IT3, LINC00681, SORBS3, NPM2, DLC1, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CLU, GOT1L1, VPS37A, NKX2-6, SGCZ, UNC5D, LETM2, ADRA1A, CTSB, ADRB3, LOC157273, PEBP4, CDCA2, ESCO2, NA NA NA NA NA NA NA NA NA LTS-017 FBXO16, LINC00599, TDH, C8orf48, KCNU1, ADAM3A, IDO2, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, PRSS55, C8orf74, HTRA4, ADAM32, LGI3, DMTN, EPHX2, EXTL3, PTK2B, FDFT1, FGFR1, FGL1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, PSD3, LEPROTL1, SLC39A14, DEFB109P1, DEFB130, ADAM2, NEIL2, LOC254896, ADAM5, ADGRA2, GATA4, FGF20, GFRA2, LSM1, ADAMDEC1, GNRH1, XKR6, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RNF5P1, GSR, GTF2E2, CNOT7, PURG, NRG1, LOC340357, IDO1, USP17L2, FAM90A25P, LOC389641, NUGGC, C8orf86, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, SCARA3, PDGFRL, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, WHSC1L1, PINX1, PIWIL2, ELP3, PPP2CB, INTS10, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TEX15, C8orf4, MTUS1, KIAA1456, CCAR2, PLEKHA2, DEFB135, DEFB136, DEFB134, LINC00589, MBOAT4, SH2D4A, BLK, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STAR, STC1, TACC1, MIR597, MIR598, LOC728024, ZNF705D, FAM90A2P, LOC729732, WRN, DUSP26, HMBOX1, PPP1R3B, FZD3, RNF122, NUDT18, TUSC3, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TM2D2, PLPP5, MAK16, FUT10, FAM86B1, TNKS, ADAM18, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, ASH2L, MTMR7, LONRF1, CHMP7, MFHAS1, RP1L1, BAG4, ENTPD4, PHYHIP) 0.438999954810006 583 0.0718357879845362 0.70340267480493 19142 0.201371528768951 2 1 1 -6.73370504820237 LTS-017 NA NA NA NA LTS-017 chr8 40012064 40012436 373 * C8orf4 NA 0 NA 0.649653100644784 8 0.221499435665195 2 NA NA -5.76443973262136 LTS-017 chr8 40012437 40554742 542306 * c(C8orf4, ZMAT4) 0.375 1 NA 0.954191526765424 55 0.185604294693723 3 3 0 -5.7645367560652 LTS-017 chr8 40554743 43056513 2501771 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, GOLGA7, PLAT, POLB, THAP1, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, CHRNA6) 0.375680473542088 30 0.0616538445818599 0.95784846901964 2428 0.249202970304699 3 2 1 -6.74053286997858 LTS-017 chr8 43056514 43212050 155537 * c(HGSNAT, POTEA) NA 0 NA 0.979655005284243 75 0.312467124324758 3 NA NA -5.76527009940415 LTS-017 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.359 1 NA 0.957469920799206 47 0.152771769941396 3 3 0 -5.76486289058166 LTS-017 chr8 48102988 48192625 89638 * c(LOC100287846, SPIDR) 0.398896180098477 2 0.101116269709676 0.882205919662106 70 0.187029455945593 3 2 1 -6.79211808155697 LTS-017 chr8 48192626 55014624 6821999 * c(LYPLA1, CEBPD, PCMTD1, PXDNL, SPIDR, NPBWR1, FAM150A, MCM4, C8orf22, OPRK1, ATP6V1H, SNTG1, PRKDC, SNAI2, TCEA1, UBE2V2, EFCAB1, RGS20, ST18, RB1CC1) 0.41252166149639 28 0.0789109319751401 1.16061364917391 2366 0.287618118566462 4 2 2 -6.84406745191565 LTS-017 chr8 55014625 55047757 33133 * character(0) NA 0 NA 0.629 1 NA NA NA NA NA LTS-017 chr8 55047758 87076520 32028763 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, SBF1P1, ZFHX4-AS1, REXO1L2P, MIR2052, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, MIR5708, MIR5681A, MIR5681B, LOC101241902, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, STMN2, XKR4, C8orf34, TMEM68, ADHFE1, UBXN2B, RALYL, CRH, RDH10, MCMDC2, CLVS1, SBSPON, CYP7A1, E2F5, SDR16C5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, NA NA NA NA NA NA NA NA NA LTS-017 LY96, SGK3, YTHDF3, C8orf46, REXO1L1P, LINC00588, PTTG3P, SNORD54, STAU2, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, MRPL15, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, LOC392232, LOC401463, C8orf59, LYN, MIR124-2, MOS, MIR2052HG, ASPH, MYBL1, PI15, ZC2HC1A, LACTB2, PDE7A, PENK, PLAG1, PMP2, GDAP1, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, CHD7, PKIA, PAG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 C8orf44, JPH1, CPA6, PEX2, RAB2A, RP1, RPL7, ZNF704, RPS20, SDCBP, PRDM14, SNX16, SNHG6, SNORD87, SOX17, UG0898H09, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, TTPA, CA1, CA2, CA3, CA8, CHCHD7, ZFAND1, ZFHX4, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NSMAF, TRIM55, LRRCC1, DNAJC5B, PSKH2, GGH, TRPA1, FAM110B, MSC, CHMP4C, KCNB2, CYP7B1, MTFR1, TGS1, TOX) 0.354660102952896 160 0.10678593175192 0.929940995156336 11178 0.336911580660724 3 2 1 -6.82593258351467 LTS-017 NA NA NA NA LTS-017 chr8 87076521 87111396 34876 * c(ATP6V0D2, PSKH2) NA 0 NA 0.929411469197591 25 0.104315834528289 3 NA NA -5.76539660793581 LTS-017 chr8 87111397 87125980 14584 * ATP6V0D2 NA 0 NA 1.492 1 NA NA NA NA NA LTS-017 chr8 87125981 87235150 109170 * c(SLC7A13, ATP6V0D2) 0.182 1 NA 1.63412449162913 77 0.423763909898988 6 6 0 -5.76482447113452 LTS-017 chr8 87235151 92988216 5753066 * c(C8orf88, LRRC69, MIR4661, LINC00534, WWP1, SLC26A7, DCAF4L2, SLC7A13, DECR1, CNBD1, TMEM64, MMP16, NBN, RMDN1, OTUD6B, CNGB3, TMEM55A, NECAB1, OSGIN2, CALB1, RUNX1T1, RIPK2, CPNE3) 0.185551281945589 34 0.0280564747500656 1.81483959793882 2209 0.486606472855765 7 6 1 -6.80436494283663 LTS-017 chr8 92988217 92991988 3772 * RUNX1T1 NA 0 NA 1.308 1 NA NA NA NA NA LTS-017 chr8 92991989 95658559 2666571 * c(LOC100288748, MIR378D2, FSBP, CDH17, FAM92A1, RAD54B, KIAA1429, GEM, TRIQK, C8orf87, RBM12B, FLJ46284, PDP1, ESRP1, RBM12B-AS1, LINC00535, RUNX1T1, TMEM67) 0.205273202306927 29 0.0360663387132287 1.59236412935718 1238 0.415476840740806 6 5 1 -6.77014911147749 LTS-017 chr8 95658560 95673730 15171 * ESRP1 NA 0 NA 1.201 1 NA NA NA NA NA LTS-017 chr8 95673731 97847347 2173617 * c(MIR3150A, LOC100500773, MIR3150B, C8orf37-AS1, CPQ, NDUFAF6, C8orf37, DPY19L4, GDF6, MTERF3, ESRP1, INTS8, LINC01298, SDC2, UQCRB, PLEKHF2, CCNE2, TP53INP1, PTDSS1) 0.298361449350023 15 0.0331602171283603 1.16045551956674 1368 0.304527727332156 4 3 1 -6.75654569346859 LTS-017 chr8 97847348 97892037 44690 * CPQ NA 0 NA 1.389 1 NA NA NA NA NA LTS-017 chr8 97892038 99467856 1575819 * c(RIDA, CPQ, POP1, ERICH5, SNORA72, KCNS2, MATN2, LAPTM4B, RPL30, STK3, NIPAL2, TSPYL5, MTDH) 0.225515993174779 27 0.0556767481530691 1.43530142224809 973 0.434856711220509 5 4 1 -6.79807085363064 LTS-017 chr8 99467857 100791122 1323266 * c(MIR875, OSR2, VPS13B, STK3, MIR599) 0.444 1 NA 1.4278884237303 345 0.275125828583501 5 5 0 -5.76567585674612 LTS-017 chr8 100791123 100883147 92025 * VPS13B 0.451 1 NA 1.4302312892807 99 0.388696896388973 5 5 0 -5.76444206099007 LTS-017 chr8 100883148 101733775 850628 * c(MIR4471, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, POLR2K, SPAG1) 0.414594131078868 16 0.0517815523779141 1.29162233570295 801 0.265332788732432 5 3 2 -6.8277298990915 LTS-017 chr8 101733776 109213893 7480118 * c(MIR3151, BAALC-AS1, MIR5680, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, PABPC1, ANGPT1, LRP12, RSPO2, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, OXR1, KLF10, YWHAZ, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, RIMS2) 0.404734381868466 47 0.131187799234152 1.48396808192522 2710 2.44089425005935 5 3 2 -6.73433107245279 LTS-017 chr8 109213894 109213948 55 * character(0) NA 0 NA 2.309 1 NA NA NA NA NA LTS-017 chr8 109213949 110987441 1773493 * c(TMEM74, KCNV1, EIF3E, SYBU, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0.315760859554428 27 0.0382649706286047 1.92415907872216 1199 0.568536378748482 7 5 2 -6.75164333772262 LTS-017 chr8 110987442 116423715 5436274 * c(MIR2053, CSMD3, KCNV1, TRPS1) 0.39354027305878 8 0.0618591429897681 1.6576249365027 474 0.749031421090479 5 3 2 -6.8808141259606 LTS-017 chr8 116423716 121502801 5079086 * c(MIR3610, LINC00536, COLEC10, MAL2, SLC30A8, EXT1, MTBP, MRPL13, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, DEPTOR, TAF2, TRPS1, COL14A1, DSCC1, UTP23, EIF3H, MED30) 0.394766371656464 46 0.0971963026870809 1.43707238890603 2000 0.372935107605857 5 3 2 -6.74689433024763 LTS-017 chr8 121502802 121502816 15 * MTBP NA 0 NA 1.614 1 NA NA NA NA NA LTS-017 chr8 121502817 121509564 6748 * MTBP NA 0 NA 1.038 1 NA NA NA NA NA LTS-017 chr8 121509565 121530190 20626 * MTBP 0.447 1 NA 1.17543600646432 25 0.217512811883193 4 4 0 -5.76449803686636 LTS-017 chr8 121530191 124526604 2996414 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, ZHX1, FBXO32, ZHX2, MTBP, ATAD2, HAS2, WDYHV1, HAS2-AS1, SNTB1, DERL1, C8orf76, FAM83A, TBC1D31) 0.463173269348493 33 0.0340888155922855 1.17628896211544 1149 0.268420010412061 4 2 2 -7.04223693543008 LTS-017 chr8 124526605 124544028 17424 * FBXO32 NA 0 NA 1.658 1 NA NA NA NA NA LTS-017 chr8 124544029 125088628 544600 * c(FBXO32, FAM91A1, ANXA13, KLHL38, FER1L6-AS1, FER1L6) 0.430742143234712 4 0.02555223408367 1.46265108738873 451 0.745028722228251 6 3 3 -6.79857206135613 LTS-017 chr8 125088629 125094512 5884 * FER1L6 NA 0 NA 0.958 1 NA NA NA NA NA LTS-017 chr8 125094513 128748498 3653986 * c(LINC00861, PCAT1, TRIB1, RNF139, ZNF572, TMEM65, LINC00964, FAM84B, NSMCE2, MYC, NDUFB9, POU5F1B, TRMT12, FER1L6, SQLE, CASC8, TATDN1, MTSS1, KIAA0196) 0.462511470249852 27 0.0277600114124298 1.11824433237097 1163 0.265112656998957 4 2 2 -7.29669559022819 LTS-017 chr8 128748499 128753230 4732 * MYC NA 0 NA 1.11677374575354 43 0.155702395230127 4 NA NA -5.76497609377148 LTS-017 chr8 128753231 128753315 85 * MYC NA 0 NA 1.759 1 NA NA NA NA NA LTS-017 chr8 128753316 129021179 267864 * c(MIR1205, MIR1206, MIR1204, MYC, PVT1) 0.355 1 NA 1.3239623766205 35 0.402702275495279 5 5 0 -5.77182549141652 LTS-017 chr8 129021180 135725058 6703879 * c(MIR1206, MIR1207, MIR1208, ASAP1-IT2, MIR5194, HHLA1, NDRG1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, ASAP1, PHF20L1, FAM49B, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, TG, LINC00977, OC90, WISP1, HPYR1) 0.4010381181845 79 0.0658891080051652 1.35217515114248 2411 0.337498076057196 5 3 2 -6.89013539130404 LTS-017 chr8 135725059 135725065 7 * ZFAT NA 0 NA 1.641 1 NA NA NA NA NA LTS-017 chr8 135725066 139736861 4011796 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, ZFAT) 0.373167693955847 10 0.0768187621758007 1.50100834906486 535 0.458271016199546 5 3 2 -6.88033973776533 LTS-017 chr8 139736862 139736866 5 * COL22A1 NA 0 NA 2.042 1 NA NA NA NA NA LTS-017 chr8 139736867 142367864 2630998 * c(COL22A1, DENND3, AGO2, GPR20, KCNK9, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.385656394043925 25 0.109605839260507 1.88809099961641 1314 0.478801502907131 7 4 3 -6.81279316037742 LTS-017 chr8 142367865 142367867 3 * GPR20 NA 0 NA 2.468 1 NA NA NA NA NA LTS-017 chr8 142367868 144413416 2045549 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, PTP4A3, TOP1MT, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GLI4, GML, GPR20, C8orf31, ZFP41, GPIHBP1, MROH5, LY6E, LY6H, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, ZNF696, PSCA, LY6D, JRK) 0.403887036527777 55 0.0428399102760255 2.25499887083797 1620 0.52384475829258 8 5 3 -6.84903038027667 LTS-017 chr8 144413417 144416901 3485 * TOP1MT 0.344 1 NA 2.0181177032866 13 0.415061070575997 7 7 0 -5.76443075259311 LTS-017 chr8 144416902 144522464 105563 * c(RHPN1, TOP1MT, ZC3H3, MAFA, RHPN1-AS1) 0.329144631277999 12 0.0414099973290011 2.33799558359572 195 0.582397924242785 13 9 4 -6.79218242099958 LTS-017 chr8 144522465 144523099 635 * ZC3H3 NA 0 NA 3.312 1 NA NA NA NA NA LTS-017 chr8 144523100 144731974 208875 * c(EEF1D, ZC3H3, MROH6, PYCRL, TSTA3, GSDMD, TIGD5, NAPRT, ZNF623) 0.314778420619483 27 0.0503105739000645 2.70559375077728 602 0.614965811691799 10 7 3 -6.73327477699433 LTS-017 chr8 144731975 144732052 78 * ZNF623 NA 0 NA 2.569 1 NA NA NA NA NA LTS-017 chr8 144732053 145701453 969401 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, CYC1, ADCK5, MAPK15, PUF60, BOP1, SCRIB, FBXL6, OPLAH, ZNF707, BREA2, FAM83H, GRINA, CPSF1, HSF1, NRBP2, WDR97, TMEM249, SPATC1, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, SCX, MIR661, MROH1, SLC52A2, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, DGAT1, GPAA1, FOXH1, KIFC2, ZNF623) 0.346316049397535 69 0.0495730019611901 2.4595643562916 3351 0.501838452673709 9 6 3 -6.73369787779282 LTS-017 chr8 145701454 145739940 38487 * c(MFSD3, GPT, PPP1R16A, FOXH1, RECQL4) NA 0 NA 2.5371288418325 243 0.456343569871672 9 NA NA -5.76461817418499 LTS-017 chr8 145739941 145740329 389 * RECQL4 NA 0 NA 1.737 1 NA NA NA NA NA LTS-017 chr8 145740330 145741748 1419 * RECQL4 0.464 1 NA 1.71903042627324 25 0.2571810322192 6 6 0 -5.76441382965603 LTS-017 chr8 145741749 146280802 539054 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF517, C8orf82, LRRC24, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, ARHGAP39, ZNF34, ZNF251, RECQL4, LRRC14) 0.462453016821054 11 0.0371654776273994 1.73062130171521 1161 0.326662071288053 6 3 3 -6.97626937436125 LTS-017 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 1.52985649941046 3 0.00404145188432745 5 NA NA -5.77698454363136 LTS-017 chr9 14732 116211 101480 * c(WASH1, FAM138C) 0.135 1 NA 0.91605848936519 3 0.175448947940229 3 3 0 -5.76713477850291 LTS-017 chr9 116212 7799970 7683759 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.441542543487279 103 0.0615439974391339 0.654852942508672 3906 0.169978432859868 2 1 1 -7.47757538601679 LTS-017 chr9 7799971 14617558 6817588 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.450449262890908 23 0.0388855623145884 0.766110119952948 1032 0.305522245817889 2 1 1 -7.0860053238704 LTS-017 chr9 14617559 27567145 12949587 * c(CDKN2B-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, LINC00032, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, SLC24A2, TUSC1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MIR31, MLLT3, LINC01239, MTAP, CDKN2A-AS1, EQTN, BNC2, HAUS6, NA NA NA NA NA NA NA NA NA LTS-017 CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, CER1, PLAA) 0.449263107200658 109 0.0567969001752815 0.691057787428771 4897 0.170749453109899 2 1 1 -6.84841221624222 LTS-017 NA NA NA NA LTS-017 chr9 27567146 32384839 4817694 * c(MIR876, MIR873, LINGO2, C9orf72, LINC01242, ACO1) NA 0 NA 0.756982847426272 75 0.104362289968971 2 NA NA -6.90321888470503 LTS-017 chr9 32384840 32405407 20568 * ACO1 NA 0 NA 1.364 1 NA NA NA NA NA LTS-017 chr9 32405408 32408496 3089 * ACO1 0.359 1 NA 1.1827370502134 9 0.177401929088847 4 4 0 -5.76441881136492 LTS-017 chr9 32408497 34725313 2316817 * c(SNORD121A, TOPORS-AS1, SNORD121B, TOPORS, SIGMAR1, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, ENHO, TMEM215, CNTFR-AS1, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, UBAP1, CHMP5, APTX, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, CCL19, CCL21, NOL6, C9orf24) 0.313927000861861 69 0.0637010280283373 1.09499906543239 3251 0.296090782609758 4 3 1 -6.91422927673392 LTS-017 chr9 34725314 34726322 1009 * FAM205A NA 0 NA 0.545460489055851 48 0.499041435764536 1 NA NA -5.76448477449614 LTS-017 chr9 34726323 34833887 107565 * c(FAM205A, FAM205BP) 0.248209088570486 3 0.0325627599157893 1.18949408832554 97 0.446661916070803 5 4 1 -6.7555145704777 LTS-017 chr9 34833888 34835100 1213 * FAM205BP 0.456 1 NA 0.666178367232394 49 0.472085346075889 2 2 0 -5.76442020023072 LTS-017 chr9 34835101 35869496 1034396 * c(MIR4667, CREB3, UNC13B, C9orf131, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, GBA2, RMRP, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.296728685113243 22 0.0580828077326893 1.13377988937134 2631 0.233974654212913 4 3 1 -6.76764022014698 LTS-017 chr9 35869497 35869551 55 * OR13J1 NA 0 NA 0.969 1 NA NA NA NA NA LTS-017 chr9 35869552 39178214 3308663 * c(GNE, FAM95C, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ALDH1B1, FRMPD1, ANKRD18A, FBXO10, IGFBPL1, OR13J1, TOMM5, PAX5, EXOSC3, OR2S2, POLR1E, SHB, HRCT1, DCAF10, CNTNAP3, ZCCHC7, RECK, CCIN, SLC25A51, GRHPR, MELK, ZBTB5) 0.348247820082975 37 0.0823560624424275 0.989038993434049 2214 0.239992546954702 3 2 1 -6.82586704123575 LTS-017 chr9 40498471 43820352 3321882 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) 0.029248250339271 2 0.00848528137423857 0.668315677759201 51 0.395633137651339 11 11 0 -14.0872260268137 LTS-017 chr9 43820353 44175697 355345 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.465906729409328 29 0.324505235371097 1 NA NA -5.76504223023798 LTS-017 chr9 65602571 66457127 854557 * LOC286297 0.471 1 NA 0.915148190936338 3 0.0859437800735651 3 3 0 -5.86360750289915 LTS-017 chr9 66457128 68433537 1976410 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.318342099919134 23 0.09902149724679 0.983401998434813 58 0.310000031711647 3 2 1 -6.90274447721618 LTS-017 chr9 68433538 68433550 13 * FRG1JP 0.205 1 NA 2.984 1 NA NA NA NA NA LTS-017 chr9 68433551 69120851 687301 * c(FRG1HP, PGM5P2, FRG1JP) 0.226 1 NA 1.19619433815826 9 0.657800311644803 4 4 0 -5.76441078527417 LTS-017 chr9 69120852 69256369 135518 * c(LOC440896, PGM5P2, CBWD6, FOXD4L6) NA 0 NA 0.785 1 NA NA NA NA NA LTS-017 chr9 69256370 101536392 32280023 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MIR4670, BANCR, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SLC35D2, FAM122A, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, NA NA NA NA NA NA NA NA NA LTS-017 TRPM6, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, FOXE1, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, LOC286359, MIR4290HG, FOXD4L3, PSAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TRMO, PGM5, PHF2, SHC3, NANS, NUTM2F, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, RFK, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, CBWD6, SPATA31C2, IPPK, WNK2, RPSAP9, FOXD4L5, SYK, KLF9, TLE1, TLE4, TMOD1, ANKRD20A4, CORO2A, XPA, ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CDC14B, FBP2, FGD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.161527243272533 292 0.0578642931389291 0.702759235230515 15953 0.387406290695897 2 2 0 -6.75720600667139 LTS-017 NA NA NA NA LTS-017 chr9 101536393 101539649 3257 * ANKS6 NA 0 NA 0.571 1 NA NA NA NA NA LTS-017 chr9 101539650 102741475 1201826 * c(NAMA, SEC61B, COL15A1, ANKS6, ERP44, STX17-AS1, STX17, TGFBR1, GALNT12, NR4A3, ALG2) 0.192185700306708 24 0.0583830430017563 0.635462700963734 808 0.149016222118274 2 2 0 -7.35525388044832 LTS-017 chr9 102741476 102742870 1395 * ERP44 0 1 NA 0.642377538836286 29 0.428295823944014 2 2 0 -5.76444866158717 LTS-017 chr9 102742871 102770064 27194 * ERP44 NA 0 NA 0.696297662835333 61 0.229569206918148 2 NA NA -5.76444981360787 LTS-017 chr9 102770065 102778528 8464 * ERP44 NA 0 NA 1.117 1 NA NA NA NA NA LTS-017 chr9 102778529 115631835 12853307 * c(MIR548Q, MIR3134, MSANTD3-TMEFF1, MIR4668, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ZNF483, C9orf84, KIAA1958, ABCA1, LPAR1, FKTN, ALDOB, PTGR1, ERP44, KIAA0368, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, INVS, GNG10, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, DNAJC25, TEX10, PLPPR1, FAM206A, NA NA NA NA NA NA NA NA NA LTS-017 TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, INIP, ZNF462, RAD23B, SUSD1, LRRC37A5P, TAL2, TXN, UGCG, ZNF189, SVEP1, FSD1L, HSDL2, TMEM246, IKBKAP, TMEFF1, CTNNAL1, MSANTD3, KLF4, PTBP3) 0.10231284796549 178 0.0471229117552144 1.0748126002139 7167 1.42507141968446 3 3 0 -6.81062820802985 LTS-017 NA NA NA NA LTS-017 chr9 115631836 117074810 1442975 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.0923736302395485 78 0.0269874139705996 1.11884799621023 2187 0.339532761575758 4 4 0 -6.78111958784367 LTS-017 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.301 1 NA NA NA NA NA LTS-017 chr9 117085363 117089956 4594 * ORM1 0.108 1 NA 0.342830705634939 42 0.304440486585214 1 1 0 -5.76689381320226 LTS-017 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.047 1 NA NA NA NA NA LTS-017 chr9 117092173 123152099 6059927 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.0965764547859517 41 0.0331012858051046 1.11275262991672 1689 0.3196207626911 4 4 0 -6.9552183290665 LTS-017 chr9 123152100 123170733 18634 * CDK5RAP2 0.149 1 NA 1.09675426898733 35 0.258549811529649 4 4 0 -5.76569371114829 LTS-017 chr9 123170734 123205955 35222 * CDK5RAP2 NA 0 NA 1.00420456916592 50 0.208619881847442 3 NA NA -5.76586516909219 LTS-017 chr9 123205956 131720416 8514461 * c(LOC100129034, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, ZER1, ZBTB6, NEK6, SLC27A4, CNTRL, RPL35, SLC25A25, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, TTC16, OLFML2A, DNM1, MEGF9, ENDOG, ENG, AK1, NAIF1, STOM, DOLK, ZBTB43, ANGPTL2, NUP188, FPGS, RABGAP1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, NA NA NA NA NA NA NA NA NA LTS-017 CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, OR1J1, OR1B1, SWI5, PTGES2-AS1, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, SPOUT1, RAB14, RC3H2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TBC1D13, STRBP, PPP6C, CDK5RAP2, LRRC8A, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TRAF1, C5, ZNF79, C9orf16, MAPKAP1, PTGES2, MIR600HG, URM1, ARPC5L, GARNL3, ZDHHC12, DPM2, KYAT1, MVB12B, WDR34, LRSAM1, MRRF, RBM18, LHX2, RALGPS1) 0.143914939494027 159 0.0549294884949168 0.720219781524856 10839 0.206943513532121 2 2 0 -6.80001392812523 LTS-017 NA NA NA NA LTS-017 chr9 131720417 131721083 667 * NUP188 NA 0 NA 1.154 1 NA NA NA NA NA LTS-017 chr9 131721084 141070283 9349200 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, LAMC3, TUBB4B, UBAC1, OLFM1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, USP20, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, NA NA NA NA NA NA NA NA NA LTS-017 FAM69B, CRAT, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ABCA2, FCN1, FCN2, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, ABL1, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, TOR1B, ABO, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, DPP7, OBP2B, OBP2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 QRFP, GLT6D1, C9orf50, PNPLA7, CYSRT1, ENTPD8, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, PAEP, MRPS2, EGFL7, PRRX2, C9orf78, FBXW5, TOR4A, EXD3, PTPA, RABL6, INPP5E, NPDC1, BARHL1, SH3GLB2, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, FAM163B, EHMT1-IT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TUBBP5, RNF224, DDX31, MRPL41, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, NUP214, LHX3, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, FUBP3, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, ADAMTSL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 PPP1R26, SEC16A) 0.151914655278446 376 0.0541846430181753 0.750356000144071 15254 0.550057221201011 2 2 0 -6.80748493190064 LTS-017 NA NA NA NA LTS-017 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.617899496559002 5 0.172189430569939 2 NA NA -5.76492055360873 LTS-017 chr10 94832 332199 237368 * c(ZMYND11, DIP2C, TUBB8) 0.294 1 NA 0.938225891272763 215 0.215743894352646 3 3 0 -5.76494421914237 LTS-017 chr10 332200 16564030 16231831 * c(PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, NA NA NA NA NA NA NA NA NA LTS-017 LOC399715, GATA3-AS1, ACBD7, PRR26, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, ADARB2-AS1, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, PTER, NMT2, USP6NL) 0.349583376869746 171 0.0685224150350022 0.916970323888946 7664 0.254452458658379 3 2 1 -6.97315025577597 LTS-017 NA NA NA NA LTS-017 chr10 16564031 16632629 68599 * RSU1 NA 0 NA 0.753 1 NA NA NA NA NA LTS-017 chr10 16632630 16982199 349570 * c(RSU1, CUBN) 0.26376529209448 6 0.188640133587739 0.814188485459461 267 0.273290402521339 3 2 1 -6.98236275954496 LTS-017 chr10 16982200 16989195 6996 * CUBN NA 0 NA 1.006 1 NA NA NA NA NA LTS-017 chr10 16989196 17024512 35317 * CUBN 0.241 1 NA 1.34277764961255 39 0.2958355284935 5 5 0 -5.76568046878142 LTS-017 chr10 17024513 17024611 99 * CUBN NA 0 NA 0.916 1 NA NA NA NA NA LTS-017 chr10 17024612 17953120 928509 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, MRC1, NA, TMEM236, VIM, STAM, CUBN, HACD1) 0.360156200462349 26 0.0908560738412471 0.862394604851141 665 0.287565730151443 3 2 1 -6.8026386027239 LTS-017 chr10 17953121 18088712 135592 * c(MRC1, NA, TMEM236) NA 0 NA 0.57086910134443 46 0.20115116530696 2 NA NA -5.85174431801982 LTS-017 chr10 18088713 18196475 107763 * c(MRC1, NA, TMEM236) NA 0 NA 0.25697238432494 39 0.236992167485326 0 NA NA -5.80824186369352 LTS-017 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 0.898 1 NA NA NA NA NA LTS-017 chr10 18198201 26446312 8248112 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.338614114297548 51 0.0989463233372559 0.960640890800715 3295 0.298544041380998 3 2 1 -6.7966884876847 LTS-017 chr10 26446313 26446346 34 * MYO3A NA 0 NA 0.83 1 NA NA NA NA NA LTS-017 chr10 26446347 38672144 12225798 * c(ABI1, MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, SEPT7P9, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, ZNF248, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CCDC7, NA NA NA NA NA NA NA NA NA LTS-017 EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.362323872746333 98 0.0535120004198433 0.899724495403811 5007 0.386025583641952 3 2 1 -6.88953172069682 LTS-017 NA NA NA NA LTS-017 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.819543029825983 5 0.247815859056679 3 NA NA -5.77906765153741 LTS-017 chr10 42905475 42905510 36 * character(0) 0.39 1 NA 2.241 1 NA NA NA NA NA LTS-017 chr10 42905511 46934817 4029307 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.344715227839126 46 0.0769023880948179 0.917669041715004 1806 0.252866393146411 3 2 1 -6.84131996188791 LTS-017 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 4.499 1 NA NA NA NA NA LTS-017 chr10 46952744 47701299 748556 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.403576009781174 34 0.0755691476624646 1.16069627355957 294 0.485113694416487 5 3 2 -6.82596987918191 LTS-017 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 0.663 1 NA NA NA NA NA LTS-017 chr10 47755982 48055065 299084 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.346 1 NA 0.588096316835214 46 0.253380049087063 2 2 0 -5.85383449744011 LTS-017 chr10 48055066 48370391 315326 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.06 1 NA NA NA NA NA LTS-017 chr10 48370392 51592598 3222207 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, MSMB, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.359966871512537 49 0.106283614130557 0.933248319784217 2396 0.287743144104665 3 2 1 -6.74579682276914 LTS-017 chr10 51592599 51632856 40258 * c(TIMM23, NA, PARG) 0.436704368657698 3 0.0121243556529821 0.595993025516046 39 0.157428847754353 2 1 1 -6.77161247082179 LTS-017 chr10 51632857 51632906 50 * c(NA, PARG) 0.408 1 NA 1.831 1 NA NA NA NA NA LTS-017 chr10 51632907 60155120 8522214 * c(MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, UBE2D1, PARG) 0.380552855446712 45 0.077588483212863 0.943798541755069 1476 0.297270603484155 3 2 1 -6.74839575933283 LTS-017 chr10 60155121 60155189 69 * TFAM NA 0 NA 1.291 1 NA NA NA NA NA LTS-017 chr10 60155190 61836168 1680979 * c(MRLN, SLC16A9, FAM13C, LINC01553, ANK3, TFAM, FAM133CP, BICC1, CCDC6, PHYHIPL) 0.346300964330615 18 0.0999936109070086 1.03271204095576 966 0.284195291640526 3 2 1 -6.84927180139851 LTS-017 chr10 61836169 62149506 313338 * ANK3 0.132531436711885 3 0.0621315808050409 0.746417267682044 254 0.201033279914983 2 2 0 -6.7959281742798 LTS-017 chr10 62149507 62332165 182659 * ANK3 NA 0 NA 1.03 1 NA NA NA NA NA LTS-017 chr10 62332166 71211511 8879346 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, ANK3, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A, CDK1, RHOBTB1) 0.366171485848712 71 0.0680022872144635 0.924187091570412 4007 0.228209059482351 3 2 1 -6.81517766628369 LTS-017 chr10 71211512 71243391 31880 * TSPAN15 NA 0 NA 1.047 1 NA NA NA NA NA LTS-017 chr10 71243392 74671611 3428220 * c(MIR1256, MIR4676, MICU1, ANAPC16, COL13A1, ADAMTS14, OIT3, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, UNC5B-AS1, AIFM2, SGPL1, MCU, CHST3, SPOCK2) 0.368534761636081 81 0.0680590316572566 0.977991393779217 3397 0.250485474131084 3 2 1 -6.75927271679287 LTS-017 chr10 74671612 74692646 21035 * OIT3 0.305 1 NA 0.944568721083403 45 0.226658616167196 3 3 0 -5.76442043253398 LTS-017 chr10 74692647 75391563 698917 * c(ECD, MSS51, CFAP70, USP54, OIT3, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1, PLA2G12B) 0.321335792110261 59 0.0754984024122566 0.946770544344429 1153 0.244387421586397 3 2 1 -6.9673088069976 LTS-017 chr10 75391564 88281464 12889901 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, GRID1-AS1, PPIF, NRG3, POLR3A, CHCHD1, COMTD1, ADK, SAMD8, DYDC1, EIF5AL1, FUT11, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, ZSWIM8, WAPL, KAT6B, ZNF503-AS1, LRIT1, AP3M1, GHITM, GLUD1P3, ZMIZ1-AS1, GRID1, ANXA11, DUPD1, LRIT2, KCNMA1, SH2D4B, C10orf99, C10orf55, LINC00595, MAT1A, LINC00857, MIR346, DUSP13, PLAU, CCSER2, ZMIZ1, MYOZ1, RGR, RPS24, LOC642361, SFTPD, NA NA NA NA NA NA NA NA NA LTS-017 BEND3P3, SFTPA1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, ZNF503, NDST2, MBL1P, CDHR1, DLG5, SEC24C) 0.290463727910418 138 0.0585148143404937 1.23223947433207 5314 0.315942291695538 4 3 1 -6.79920184919234 LTS-017 NA NA NA NA LTS-017 chr10 88281465 88281563 99 * WAPL NA 0 NA 1.306 1 NA NA NA NA NA LTS-017 chr10 88281564 96163039 7881476 * c(PLCE1-AS1, KLLN, HECTD2-AS1, FAS-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, ADIRF, LDB3, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP26A1, SLC35G1, CPEB3, TBC1D12, IFIT5, MYOF, PIPSL, ANKRD1, GLUD1, FLJ37201, HHEX, HTR7, FFAR4, LIPM, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, LIPA, MIR107, LINC00863, IFIT1B, PLCE1, PDE6C, PANK1, EXOC6, FAM35A, NA NA NA NA NA NA NA NA NA LTS-017 MARCH5, PPP1R3C, CEP55, RNLS, PTEN, STAMBPL1, ACTA2, RBP4, FAM25A, NOC3L, LIPK, LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, PCGF5, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, LGI1, OPN4, MINPP1, KIF20B) 0.269139482278293 100 0.0496518576661233 1.33489524771033 6024 0.430905647450005 5 4 1 -7.03625606129373 LTS-017 NA NA NA NA LTS-017 chr10 96163040 96253174 90135 * TBC1D12 NA 0 NA 1.31920964117657 18 0.202584130832994 5 NA NA -5.77510037974154 LTS-017 chr10 96253175 96294851 41677 * TBC1D12 0.06 1 NA 1.07677145871707 85 0.281086095346602 4 4 0 -5.76796438042145 LTS-017 chr10 96294852 97442995 1148144 * c(SORBS1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, TBC1D12, TCTN3, HELLS, ALDH18A1, PDLIM1) 0.0827595778613897 18 0.027905829034767 1.07328364479833 932 0.282650535519499 4 4 0 -6.85745830392636 LTS-017 chr10 97442996 97816420 373425 * c(C10orf131, TCTN3, CC2D2B, CCNJ, ENTPD1-AS1, ENTPD1) 0.152 1 NA 1.03987369802749 357 0.247445428771039 3 3 0 -5.79367792439345 LTS-017 chr10 97816421 102587647 4771227 * c(DNMBP-AS1, FRAT1, MIR1287, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ERLIN1, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, ABCC2, COX15, CPN1, NKX2-3, DNTT, RRP12, DNMBP, FRAT2, SEC31B, C10orf12, ANKRD2, CNNM1, R3HCC1L, GOT1, BLOC1S2, BLNK, HPS1, GOLGA7B, C10orf62, NDUFB8, PAX2, EXOSC1, CUTC, PGAM1, CCNJ, CRTAC1, CWF19L1, PI4K2A, HIF1AN, TM9SF3, ENTPD7, AVPI1, HPSE2, SCD, MMS19, SFRP5, SLIT1, NA NA NA NA NA NA NA NA NA LTS-017 SNORA12, TLL2, ENTPD1-AS1, WNT8B, UBTD1, SLC25A28, MARVELD1, LOXL4, ZDHHC16, LCOR, PYROXD2, ARHGAP19, OLMALINC, PKD2L1, OPALIN, ZNF518A) 0.090914672244942 65 0.0333044522318194 1.0939211302747 5461 0.270093406796946 4 4 0 -7.04025400573448 LTS-017 NA NA NA NA LTS-017 chr10 102587648 102587651 4 * PAX2 NA 0 NA 1.018 1 NA NA NA NA NA LTS-017 chr10 102587652 105104801 2517150 * c(TLX1NB, KCNIP2-AS1, MIR3158-1, MIR3158-2, RPARP-AS1, BORCS7-ASMT, ACTR1A, NPM3, LBX1, MGEA5, SFXN2, BORCS7, CYP17A1, FGF8, NT5C2, PPRC1, DPCD, POLL, KCNIP2, TLX1, LBX1-AS1, ARL3, NFKB2, PAX2, SUFU, PITX3, CNNM2, WBP1L, SLF2, PSD, C10orf2, AS3MT, MIR146B, SEMA4G, FBXW4, MIR608, RPEL1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, TRIM8, KAZALD1, SFXN3, ELOVL3, PCGF6, LZTS2, MRPL43, GBF1, NA NA NA NA NA NA NA NA NA LTS-017 LDB1, BTRC, INA, NOLC1) 0.116491829369425 43 0.0566854310668808 0.99458735893064 3994 0.253586826775048 3 3 0 -6.78582541081425 LTS-017 NA NA NA NA LTS-017 chr10 105104802 105104805 4 * PCGF6 NA 0 NA 1.391 1 NA NA NA NA NA LTS-017 chr10 105104806 117823898 12719093 * c(MIR936, MIR1307, MIR2110, MIR4295, SH3PXD2A-AS1, ADD3-AS1, MIR4680, MIR4483, MIR4482, SMNDC1, SORCS1, GSTO2, SFR1, CALHM3, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CFAP58, DUSP5, PDCD11, SORCS3, CALHM1, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, CALHM2, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, TAF5, MIR609, TCF7L2, TECTB, XPNPEP1, NA NA NA NA NA NA NA NA NA LTS-017 PLEKHS1, OBFC1, CFAP43, SHOC2, CASP7, PCGF6, AFAP1L2, USMG5, ITPRIP, SMC3, NEURL1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.0862647609543392 91 0.0331894035489719 1.17905632149761 6399 0.345991482251232 4 4 0 -6.75000495817495 LTS-017 NA NA NA NA LTS-017 chr10 117823899 119308575 1484677 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.087218726172534 22 0.0522511625007902 1.33301994507858 1288 0.323521910727268 5 5 0 -6.82954889974272 LTS-017 chr10 119308576 121632254 2323679 * c(MIR4681, PRDX3, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.0938664713806247 12 0.0282681960706889 1.17099885365418 1495 1.34194242264129 4 4 0 -6.75689851021548 LTS-017 chr10 121632255 121632260 6 * MCMBP NA 0 NA 1.735 1 NA NA NA NA NA LTS-017 chr10 121632261 124338284 2706024 * c(MIR3941, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, DMBT1, PLPP4, FGFR2, WDR11-AS1, ARMS2, NSMCE4A, WDR11, HTRA1, PLEKHA1, MCMBP) 0.0932865836130053 40 0.0330125753040433 1.27065624643879 1350 0.424355257447067 4 4 0 -6.7787125856542 LTS-017 chr10 124338285 124357489 19205 * DMBT1 NA 0 NA 0.241824093536891 39 0.334797148888971 0 NA NA -5.76628537864082 LTS-017 chr10 124357490 124359492 2003 * DMBT1 NA 0 NA 1.266 1 NA NA NA NA NA LTS-017 chr10 124359493 126185618 1826126 * c(FAM24B-CUZD1, FAM24A, PSTK, CPXM2, DMBT1, FAM24B, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, NKX1-2, C10orf120, LOC399815, OAT, CUZD1, CHST15, LHPP, IKZF5, C10orf88, BUB3) 0.077093038663499 23 0.0476091215892293 1.24524226411995 1279 0.544562091616327 4 4 0 -6.77159030490841 LTS-017 chr10 126185619 126677472 491854 * c(CTBP2, FAM175B, METTL10, ZRANB1, LHPP, FAM53B) 0.204 1 NA 1.2839473385283 459 0.44004918499274 4 4 0 -5.77186159243493 LTS-017 chr10 126677473 127585237 907765 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS, FANK1) 0.28414271558662 27 0.1360252616056 1.16686515933837 642 0.321658422594539 4 3 1 -6.73970458999307 LTS-017 chr10 127585238 127668317 83080 * c(FANK1-AS1, FANK1) 0.044 1 NA 0.899911206265372 3 0.602346245941651 3 3 0 -5.76482430021124 LTS-017 chr10 127668318 133107630 5439313 * c(MIR378C, MIR4297, LINC00601, GLRX3, C10orf90, CTAGE7P, CLRN3, DOCK1, EBF3, TCERG1L, LINC00959, FOXI2, MGMT, MKI67, PTPRE, NPS, FAM196A, ADAM12, FANK1) 0.0825582614981223 33 0.0353285177536033 1.2142101261989 1769 0.316068151024042 4 4 0 -6.75513823244317 LTS-017 chr10 133107631 133109531 1901 * TCERG1L NA 0 NA 0.646 1 NA NA NA NA NA LTS-017 chr10 133109532 134693010 1583479 * c(DPYSL4, C10orf91, PWWP2B, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC01164, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.106118895319097 42 0.0590139503970325 1.04259697595092 982 0.313883317555091 3 3 0 -6.81835719067349 LTS-017 chr10 134693011 134756359 63349 * CFAP46 0.112454401388984 9 0.0458693797647189 0.531366754999096 177 0.157118446245143 3 3 0 -7.21398998944623 LTS-017 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.651 1 NA NA NA NA NA LTS-017 chr10 134884462 135237196 352735 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.107756041320835 63 0.0427986390239707 1.04174431935793 1125 0.298146763022029 3 3 0 -6.75661695262528 LTS-017 chr10 135237197 135237240 44 * SPRN NA 0 NA 1.389 3 0.0207846096908265 5 NA NA -5.76449911178793 LTS-017 chr10 135237241 135267393 30153 * SPRN NA 0 NA 1.602 1 NA NA NA NA NA LTS-017 chr10 135267394 135269955 2562 * SCART1 0.448 1 NA 1.79446115346407 14 0.327401566450568 6 6 0 -5.7644615563653 LTS-017 chr10 135269956 135381888 111933 * c(CYP2E1, SPRNP1, SCART1, SYCE1) 0.459290808422603 11 0.0268517817252074 1.95588132428189 261 0.66484109529446 8 4 4 -7.07801249505868 LTS-017 chr10 135381889 135437421 55533 * c(SPRNP1, SYCE1) NA 0 NA 0.539 1 NA NA NA NA NA LTS-017 chr10 135437422 135473026 35605 * FRG2B 0.274891293659247 6 0.09037625056765 1.13542773826681 36 0.986567364291823 8 6 2 -6.74243011001812 LTS-017 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.615292612869094 3 0.0727461339178928 2 NA NA -5.76459403332784 LTS-017 chr11 193025 193096 72 * SCGB1C1 0.081 1 NA 0.849 1 NA NA NA NA NA LTS-017 chr11 193097 494974 301878 * c(IFITM3, IFITM2, PKP3, ODF3, SCGB1C1, NLRP6, SIRT3, ANO9, B4GALNT4, IFITM5, BET1L, PSMD13, SIGIRR, RNH1, RIC8A, PGGHG, PTDSS2, IFITM1) 0.123964170732701 47 0.0584218604936009 0.904833592202962 1077 0.855621772462064 3 3 0 -6.76242046500583 LTS-017 chr11 494975 639970 144996 * c(MIR210HG, LRRC56, LOC143666, DRD4, LMNTD2, HRAS, IRF7, MIR210, CDHR5, PHRF1, RNH1, SCT, RASSF7) 0.0927023807023913 32 0.0228881396247898 1.18328358366509 676 0.418531163835988 4 4 0 -6.75559293934355 LTS-017 chr11 639971 640149 179 * DRD4 NA 0 NA 0.636 1 NA NA NA NA NA LTS-017 chr11 640150 1015828 375679 * c(DEAF1, AP2A2, LOC171391, DRD4, CRACR2B, TMEM80, PDDC1, MUC6, CEND1, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, CD151) 0.118221756733345 53 0.0351655219389187 0.929949331418954 1228 0.268000915441203 3 3 0 -6.75881392407596 LTS-017 chr11 1015829 1016834 1006 * MUC6 0.233 1 NA 0.898242945632678 21 0.16765288687103 3 3 0 -5.76447925599233 LTS-017 chr11 1016835 1018483 1649 * MUC6 0.305420648652961 39 0.0915496664685313 1.06664051236393 73 0.37402766585503 7 5 2 -6.73647837953606 LTS-017 chr11 1018484 1019375 892 * MUC6 0.13 1 NA 0.657234759452318 11 0.202982757888447 2 2 0 -5.76447201079786 LTS-017 chr11 1019376 1212825 193450 * c(MUC2, MUC6, MUC5B) 0.141125937891784 32 0.0681731370328755 1.00328484793443 474 0.375109028399198 2 2 0 -6.84483202156752 LTS-017 chr11 1212826 1212954 129 * MUC5B 0.394 1 NA 0.586314022327256 5 0.200619540424157 2 2 0 -5.76447420607469 LTS-017 chr11 1212955 1213556 602 * MUC5B 0.349255461866801 23 0.0725727384872688 1.30488516440847 44 0.45431870501817 9 6 3 -6.73407106605054 LTS-017 chr11 1213557 1219151 5595 * MUC5B 0.107 1 NA 0.977382893396994 57 0.177369799400429 3 3 0 -5.76449184910055 LTS-017 chr11 1219152 1253856 34705 * MUC5B 0.123793135268054 13 0.0459048625992542 0.965917246297975 123 0.316620282313159 3 3 0 -6.77834642868005 LTS-017 chr11 1253857 1253969 113 * MUC5B 0.417 1 NA 0.833566757083402 3 0.0549302588136387 3 3 0 -5.764795167989 LTS-017 chr11 1253970 1260193 6224 * MUC5B 0.284346147561506 13 0.0749920508607925 0.977987825032994 55 0.211433359051653 4 3 1 -6.74657623937451 LTS-017 chr11 1260194 1267325 7132 * MUC5B 0.158 1 NA 0.918475381094124 74 0.178462517207761 3 3 0 -5.76456991728176 LTS-017 chr11 1267326 2292149 1024824 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, CTSD, DUSP8, TOLLIP-AS1, H19, KRTAP5-AS1, IGF2, INS, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2) 0.129607310081754 56 0.0493813545968332 0.94048363358791 1450 0.270587027386438 3 3 0 -6.81679882560021 LTS-017 chr11 2292150 2320610 28461 * c(C11orf21, ASCL2) NA 0 NA 1.167 1 NA NA NA NA NA LTS-017 chr11 2320611 2542606 221996 * c(TSPAN32, TSSC4, C11orf21, TRPM5, KCNQ1, CD81) 0.128206499848398 18 0.106130330531962 1.21976275833605 382 0.333587816669168 4 4 0 -6.81725848539673 LTS-017 chr11 2542607 2608850 66244 * KCNQ1 0.075 1 NA 1.24422935816788 39 0.229134636210833 4 4 0 -5.76553464581361 LTS-017 chr11 2608851 2946497 337647 * c(CDKN1C, KCNQ1OT1, KCNQ1, SLC22A18, SLC22A18AS, KCNQ1DN) 0.0942641302056917 5 0.0151492574075431 1.16727989275173 182 0.321593118979895 4 4 0 -6.82701193190704 LTS-017 chr11 2946498 2950040 3543 * PHLDA2 NA 0 NA 0.819 1 NA NA NA NA NA LTS-017 chr11 2950041 5776886 2826846 * c(LOC100506082, MIR4687, TRIM22, OR7E12P, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, MRGPRG-AS1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, MRGPRG, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, NA NA NA NA NA NA NA NA NA LTS-017 OR51A4, OR51A2, ART1, TRIM6-TRIM34, NAP1L4, NUP98, UBQLN3, TRIM34, TRIM68, MMP26, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, CARS, TRIM5) 0.101796750570018 171 0.0432169183258566 1.12310580126614 3405 0.54496181754595 4 4 0 -6.81451796308841 LTS-017 NA NA NA NA LTS-017 chr11 5776887 5809477 32591 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.138 1 NA 0.336263712734399 39 0.242886004817141 1 1 0 -5.79577495716465 LTS-017 chr11 5809478 5809500 23 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 1.023 1 NA NA NA NA NA LTS-017 chr11 5809501 7273616 1464116 * c(TRIM22, TRIM3, PRKCDBP, TPP1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, TIMM10B, RBMXL2, OR10A4, APBB1, HPX, NLRP14, OR52L1, OR2AG2, OR10A2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, MRPL17, SMPD1, TAF10, ZNF214, ZNF215, OR52N1, FAM160A2, TRIM5, OR6A2, DCHS1, CCKBR) 0.105344648907965 69 0.0221003967437665 1.05964307446103 2848 0.355207806835136 3 3 0 -6.8548055080754 LTS-017 chr11 7273617 7324238 50622 * SYT9 NA 0 NA 1.313 1 NA NA NA NA NA LTS-017 chr11 7324239 18034670 10710432 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, USH1C, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, OR5P2, OR5P3, CYP2R1, COPB1, ADM, SYT9, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, SERGEF, OR5E1P, OR10A3, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, OLFML1, LOC283299, NLRP10, OTOG, OVCH2, GALNT18, NCR3LG1, KCNC1, KCNJ11, INSC, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, RNF141, NA NA NA NA NA NA NA NA NA LTS-017 PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, LOC644656, RASSF10, STK33, ST5, SNORA23, SNORA3B, ABCC8, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, CALCA, RIC3, CALCB, SBF2, FAR1, BTBD10, PPFIBP2, MICALCL, EIF3F, MICAL2, CTR9, TRIM66) 0.0946948874602421 147 0.0362594028113735 1.11565125779591 8375 0.447875214931541 4 4 0 -6.90714343436174 LTS-017 NA NA NA NA LTS-017 chr11 18034671 18720488 685818 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.156640635960053 29 0.107659539078894 1.02404702646105 1165 0.328206799761794 3 3 0 -6.85936832136052 LTS-017 chr11 18720489 26713331 7992843 * c(LOC100126784, CCDC179, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, MRGPRX2, DBX1, MUC15, TMEM86A, SLC5A12, ANO5, FANCF, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, NAV2-AS4, NELL1, ZDHHC13, SLC17A6, ANO3, E2F8, CSRP3, PTPN5, NAV2, SLC6A5) 0.0969141695990636 64 0.0667790700476472 1.15321448154645 2575 0.3773284512929 4 4 0 -6.7898779936254 LTS-017 chr11 26713332 26743583 30252 * SLC5A12 NA 0 NA 1.24427909520329 60 0.213204540925343 4 NA NA -5.76500455104738 LTS-017 chr11 26743584 27015603 272020 * SLC5A12 NA 0 NA 2.042 1 NA NA NA NA NA LTS-017 chr11 27015604 27017607 2004 * FIBIN 0.37 1 NA 1.75183317287272 41 0.256416579407654 6 6 0 -5.76443362764995 LTS-017 chr11 27017608 30255590 3237983 * c(LINC00678, METTL15, FSHB, KCNA4, FIBIN, BDNF-AS, LIN7C, LGR4, BDNF, MIR610, KIF18A, BBOX1, CCDC34) 0.382439098924848 21 0.0465538602562871 1.67729239296484 849 0.421164383711378 6 4 2 -6.95418231986231 LTS-017 chr11 30255591 30601858 346268 * c(ARL14EP, FSHB, MPPED2) 0.366203726283496 10 0.046083981309489 1.97926499178379 294 0.638525162673327 6 4 2 -6.78962989995676 LTS-017 chr11 30601859 30601957 99 * MPPED2 NA 0 NA 1.702 1 NA NA NA NA NA LTS-017 chr11 30601958 40136834 9534877 * c(C11orf91, DCDC5, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, DNAJC24, LDLRAD3, CSTF3, IMMP1L, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, WT1-AS, TRIM44, NAT10, TCP11L1, LRRC4C, RAG1, RAG2, RCN1, SLC1A2, TRAF6, MPPED2, WT1, PRRG4, QSER1, PRR5L, PDHX, CAT, DEPDC7, CD44, CD59) 0.41128131703424 118 0.076583372643005 1.40842918731765 4750 0.420555930411302 5 3 2 -6.75310854708063 LTS-017 chr11 40136835 43333476 3196642 * c(LOC100507205, HNRNPKP3, LRRC4C) 0.431044344795909 2 0.0190918830920368 1.23955304932385 48 0.224478472605104 4 2 2 -6.86623798102671 LTS-017 chr11 43333477 43602992 269516 * c(MIR670, MIR129-2, TTC17, API5) 0.452 1 NA 1.12762197661113 311 0.207588449187509 4 4 0 -5.77782652603704 LTS-017 chr11 43602993 48328644 4725652 * c(MIR3160-2, MIR3160-1, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, OR4X2, OR4B1, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, OR4S1, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, OR4X1, ARHGAP1, FAM180B, LRP4, MIR129-2, MDK, MYBPC3, NDUFS3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PRDM11, PSMC3, SYT13, NA NA NA NA NA NA NA NA NA LTS-017 PTPRJ, RAPSN, ALX4, SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, AGBL2, ARFGAP2, ACCS, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.451978557241677 104 0.0537159952007155 1.17959194841094 5354 0.391319295529852 4 2 2 -6.77524042647379 LTS-017 NA NA NA NA LTS-017 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 1.02262892535131 4 0.107270297224659 3 NA NA -5.7693353027307 LTS-017 chr11 48346420 48346423 4 * character(0) 0.362 1 NA 2.785 1 NA NA NA NA NA LTS-017 chr11 48346424 48388614 42191 * c(OR4C3, OR4C45) 0.31536711862801 110 0.0877843997190182 2.17884227623709 188 1.28174241591184 10 7 3 -6.73368975896685 LTS-017 chr11 48388615 48388641 27 * character(0) 0.377 1 NA 2.848 1 NA NA NA NA NA LTS-017 chr11 48388642 48388657 16 * character(0) 0.385 1 NA 2.916 1 NA NA NA NA NA LTS-017 chr11 48388658 48388675 18 * character(0) NA 0 NA 1.236 1 NA NA NA NA NA LTS-017 chr11 48388676 51526755 3138080 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.418199185418045 28 0.0979386483262805 1.24536108505939 476 0.600380866099673 4 2 2 -6.76654111697651 LTS-017 chr11 51526756 51527703 948 * character(0) NA 0 NA 1.25299893221415 5 0.0892608536817792 4 NA NA -5.76455821480042 LTS-017 chr11 55035776 55135876 100101 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) 0.49 1 NA 0.910115087609779 33 0.281395965489805 3 3 0 -5.76585375871546 LTS-017 chr11 55135877 55136500 624 * OR4A15 NA 0 NA 1.01352734575449 11 0.130177920205736 3 NA NA -5.76450045134547 LTS-017 chr11 55136501 55321804 185304 * OR4C15 NA 0 NA 1.219 1 NA NA NA NA NA LTS-017 chr11 55321805 56000471 678667 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR8J3, OR4P4, OR4C15, TRIM51) 0.457083241564838 22 0.0278217890879064 1.2384140149209 564 0.356421821859564 4 2 2 -6.9960435607185 LTS-017 chr11 56000472 56015788 15317 * OR5T2 0 1 NA 1.32389711101642 17 0.963781663857658 5 5 0 -5.76448433425321 LTS-017 chr11 56015789 56380128 364340 * c(OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8) 0.389118417559823 19 0.132586350545134 1.28365345244281 333 0.684604011509034 5 3 2 -6.75334423235683 LTS-017 chr11 56380129 56380134 6 * c(OR5M1, OR8U8) 0.421 1 NA 3.012 1 NA NA NA NA NA LTS-017 chr11 56380135 57480276 1100142 * c(TMX2-CTNND1, PRG3, CLP1, APLNR, OR5AR1, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, OR9G4, SLC43A3, OR5AP2, RTN4RL2, OR5M1, OR5AK2, MIR130A, P2RX3, OR8U8, OR9G9, TMX2, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.36536617177285 53 0.0924659118140584 1.73131155871262 1466 0.524358662136656 6 4 2 -6.74397253117871 LTS-017 chr11 57480277 57505105 24829 * c(TMX2-CTNND1, TMX2) NA 0 NA 0.975 1 NA NA NA NA NA LTS-017 chr11 57505106 60886913 3381808 * c(MIR3162, TMX2-CTNND1, GLYAT, PTGDR2, CNTF, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, DTX4, MS4A6E, GIF, PRPF19, SELENOH, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, MS4A13, TMX2, SLC15A3, MS4A4A, MS4A12, MRPL16, TMEM132A, NA NA NA NA NA NA NA NA NA LTS-017 MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, STX3, TCN1, TMEM109, CCDC86, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, CD5, GLYATL1, CD6, MS4A1, MS4A3, LPXN) 0.348971460177746 49 0.0968953736531015 0.968439981916558 3610 0.246115143029441 3 2 1 -6.77109743006207 LTS-017 NA NA NA NA LTS-017 chr11 60886914 60890563 3650 * CD5 0.349 1 NA 1.08345831773569 15 0.258793574660798 4 4 0 -5.7647357999334 LTS-017 chr11 60890564 66105194 5214631 * c(NAALADL1, TMEM262, MIR1908, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4488, KCNK7, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, PLA2G16, CHRM1, CDCA5, RPLP0P2, SLC22A9, BATF2, SLC22A12, CATSPER1, HRASLS5, COX8A, C11orf84, CST6, CTSW, DDB1, GPHA2, EEF1G, MARK2, ESRRA, FAU, VWCE, CYB561A3, PPP1R32, NA NA NA NA NA NA NA NA NA LTS-017 TIGD3, LRRN4CL, HNRNPUL2, FEN1, FKBP2, ATG2A, GANAB, FAM89B, SNHG1, POLA2, FLRT1, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, TKFC, DKFZP434K028, B3GAT3, PPP1R14B, BSCL2, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, EFEMP2, DNAJC4, INCENP, TMEM179B, MALAT1, SLC22A25, SLC22A10, SPDYC, LRRC10B, FADS1, FADS3, PCNX3, ARL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, OVOL1, KCNK4, UBXN1, TMEM216, TRMT112, TMEM138, PGA5, PLCB3, POLR2G, WDR74, SDHAF2, HRASLS2, VPS37C, PPP2R5B, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, PYGM, RAB3IL1, MAP4K2, RARRES3, RELA, DPF2, ROM1, PGA3, PGA4, KLC2, TUT1, SIPA1, SLC3A2, C11orf95, STX5, SNORA57, MIR611, TM7SF2, SCGB1A1, VPS51, MRPL49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, METTL12, SF1, ZFPL1, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, CPSF7, ASRGL1, MUS81, FOSL1, INTS5, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, BANF1, GAL3ST3, RPS6KA4, SYT7, SART1, AP5B1, FIBP, CD5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, FADS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RIN1) 0.358114249127205 225 0.0712967510223938 0.986571047580901 13866 0.254351752469796 3 2 1 -6.81372261860511 LTS-017 NA NA NA NA LTS-017 chr11 66105195 66285353 180159 * c(DPP3, B4GAT1, PELI3, BRMS1, NPAS4, SLC29A2, BBS1, MRPL11) 0 1 NA 1.0071102748145 543 0.197222650718315 3 3 0 -5.77362804594123 LTS-017 chr11 66285354 66813272 527919 * c(RBM14-RBM4, RBM14, ZDHHC24, C11orf86, PC, CCDC87, BBS1, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, CTSF, ACTN3, SYT12, CCS, RCE1) 0.283637915373018 4 0.168892470722252 0.995080139240407 1266 0.199996216337712 3 2 1 -6.90044311192065 LTS-017 chr11 66813273 73357710 6544438 * c(LOC100129216, LOC100130987, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4691, MIR4692, IL18BP, SHANK2-AS1, CDK2AP2, TCIRG1, STARD10, CHKA, MRGPRD, MRGPRF, ARAP1, CPT1A, GRK2, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, DEFB108B, NUDT8, ANAPC15, MYEOV, ALG1L9P, GSTP1, RHOD, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, NA NA NA NA NA NA NA NA NA LTS-017 KRTAP5-9, KRTAP5-10, GPR152, DOC2GP, FLJ42102, PHOX2A, LRP5, MIR139, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, P2RY2, P2RY6, GAL, KMT5B, PDE2A, CABP2, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, CABP4, CORO1B, CARNS1, POLD4, KRTAP5-8, PTPRCAP, PLEKHB1, RAD9A, CCND1, RPS6KB2, FAM86C2P, TMEM134, CLPB, UNC93B1, RELT, PPFIA1, FADD, ATG16L2, AIP, SYT12, ACY3, PITPNM1, TESMIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ARHGEF17, FCHSD2, FGF19) 0.156906303717712 80 0.0620381211918338 0.750259101801288 6987 0.177790317400632 2 2 0 -7.20120210653213 LTS-017 NA NA NA NA LTS-017 chr11 73357711 73689521 331811 * c(DNAJB13, COA4, MRPL48, PLEKHB1, RAB6A, UCP2, PAAF1) NA 0 NA 0.722300556177381 458 0.184351270823518 2 NA NA -5.76817015184581 LTS-017 chr11 73689522 73712020 22499 * c(UCP2, UCP3) 0.414 1 NA 1.06568196443051 17 0.258619951689278 3 3 0 -5.76703957661418 LTS-017 chr11 73712021 75430586 1718566 * c(KCNE3, TPBGL, MIR4696, POLD3, NEU3, SLCO2B1, SNORD15B, XRRA1, RNF169, CHRDL2, C2CD3, P4HA3, PGM2L1, KLHL35, OR2AT4, LIPT2, ARRB1, MAP6, MIR326, PPME1, SNORD15A, RPS3, UCP3, MOGAT2, GDPD5, SERPINH1, SPCS2) 0.350702572636218 60 0.0504789350259683 0.963813795659224 2274 0.272052581289892 3 2 1 -6.81715888863372 LTS-017 chr11 75430587 76061083 630497 * c(LOC283214, THAP12, UVRAG, WNT11, MOGAT2, DGAT2) NA 0 NA 0.978564347304145 311 0.187943839307761 3 NA NA -5.77333152426713 LTS-017 chr11 76061084 76061182 99 * THAP12 NA 0 NA 1.104 1 NA NA NA NA NA LTS-017 chr11 76061183 76116713 55531 * THAP12 0.444 1 NA 1.172172188095 125 0.216854195999479 4 4 0 -5.76472593404217 LTS-017 chr11 76116714 77033708 916995 * c(B3GNT6, GDPD4, TSKU, LRRC32, GUCY2EP, MYO7A, OMP, PAK1, ACER3, EMSY, CAPN5) 0.451079473626508 45 0.0407530379359637 1.24289635898426 1264 0.283955736440998 4 2 2 -6.80021760026128 LTS-017 chr11 77033709 77036317 2609 * PAK1 0 1 NA 1.17046760221104 17 0.611459434227556 4 4 0 -5.76441226627974 LTS-017 chr11 77036318 77300956 264639 * c(AQP11, PAK1) NA 0 NA 1.20878297104505 91 0.213959884638294 4 NA NA -5.76473261967926 LTS-017 chr11 77300957 77301089 133 * AQP11 NA 0 NA 1.729 1 NA NA NA NA NA LTS-017 chr11 77301090 77389186 88097 * c(CLNS1A, AQP11, RSF1) 0.316684869812554 3 0.0805253583247745 2.23644771743281 256 0.54591090183756 10 7 3 -6.73882432534932 LTS-017 chr11 77389187 77394684 5498 * RSF1 NA 0 NA 3.573 1 NA NA NA NA NA LTS-017 chr11 77394685 78365640 970956 * c(KCTD21-AS1, NDUFC2-KCTD14, TENM4, KCTD21, AAMDC, NDUFC2, RSF1, USP35, KCTD14, THRSP, ALG8, NARS2, INTS4, GAB2) 0.125014455337634 46 0.0386748429636226 4.55480953771697 953 1.253109155845 19 17 2 -6.73784154783171 LTS-017 chr11 78365641 78365645 5 * TENM4 NA 0 NA 5.736 1 NA NA NA NA NA LTS-017 chr11 78365646 78419534 53889 * TENM4 0.099 1 NA 6.76556812729937 169 1.09680952923499 20 20 0 -5.76643653961062 LTS-017 chr11 78419535 78498080 78546 * TENM4 NA 0 NA 6.17481060613534 69 1.86013839285675 20 NA NA -5.76486752291797 LTS-017 chr11 78498081 78516338 18258 * TENM4 NA 0 NA 1.206 1 NA NA NA NA NA LTS-017 chr11 78516339 82444226 3927888 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4) 0.143 1 NA 0.763158590087594 110 0.179652168095047 2 2 0 -6.20244997470824 LTS-017 chr11 82444227 101454697 19010471 * c(NAALAD2, MIR1304, SNORA70E, MIR1260B, MIR3920, RAB30-AS1, LOC100506368, MIR4490, GRM5-AS1, JRKL-AS1, LOC101054525, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, ENDOD1, RAB38, PANX1, FUT4, CHORDC1, RAB30, C11orf54, GRM5, ANKRD42, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, NA NA NA NA NA NA NA NA NA LTS-017 PCF11, PGR, CNTN5, SYTL2, ANKRD49, PRCP, KDM4D, TMEM126B, SMCO4, TRIM49, CREBZF, CCDC90B, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, CCDC82, PICALM, FZD4, TMEM133, TMEM126A, MAML2, CEP295, OR7E2P, JRKL, EED, MTMR2, MED17, CEP57) 0.15155429278212 161 0.0641104364281371 0.702186201858405 8025 0.206680639589566 2 2 0 -6.73561570760038 LTS-017 NA NA NA NA LTS-017 chr11 101454698 101761392 306695 * character(0) NA 0 NA 0.313 1 NA NA NA NA NA LTS-017 chr11 101761393 101786240 24848 * c(ANGPTL5, CEP126) 0.22 1 NA 0.466785316287355 66 0.145648140687689 1 1 0 -5.76467883299214 LTS-017 chr11 101786241 101793311 7071 * c(ANGPTL5, CEP126) NA 0 NA 0.592 1 NA NA NA NA NA LTS-017 chr11 101793312 114315188 12521877 * c(LOC100132078, WTAPP1, NCAM1-AS1, MIR4301, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, RBM7, YAP1, CARD16, TMEM123, COLCA2, PIH1D2, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANKK1, REXO2, TIMM8B, GRIA4, GUCY1A2, BIRC2, BIRC3, HSPB2, HTR3A, C11orf53, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, NA NA NA NA NA NA NA NA NA LTS-017 MMP13, CARD17, NCAM1, ATM, NNMT, NPAT, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, TTC12, PPP2R1B, C11orf57, ELMOD1, TEX12, CEP126, ARHGAP20, USP28, PTS, CARD18, RDX, AASDHPPT, SDHD, MMP27, LOC643733, LOC643923, CLDN25, C11orf1, SLN, ZBTB16, DYNC2H1, ALG9, PDGFD, CUL5, TMPRSS5, CASP1, CASP4, CASP5, BCO2, DCUN1D5, MSANTD4, C11orf70, DIXDC1, ZC3H12C, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20) 0.15470833706739 186 0.0548093565218251 0.719160574388616 8559 0.215881419372357 2 2 0 -6.80758091544746 LTS-017 NA NA NA NA LTS-017 chr11 114315189 114421747 106559 * c(NXPE1, REXO2) 0.468 1 NA 0.701321497697528 75 0.338505033430313 2 2 0 -5.76441966100321 LTS-017 chr11 114421748 114421967 220 * NXPE1 0.475457182168677 10 0.0137780017902936 1.04078130319138 14 0.332069542895282 4 2 2 -9.41838579235737 LTS-017 chr11 114421968 114452339 30372 * c(NXPE1, NXPE4) 0.181 1 NA 0.762905530648007 25 0.276069514192833 2 2 0 -5.76594133217867 LTS-017 chr11 114452340 118471527 4019188 * c(LOC100131626, BACE1-AS, TMPRSS4-AS1, FXYD6-FXYD2, LOC100652768, MPZL2, ATP5L, APOA5, NXPE2, JAML, TTC36, MPZL3, CEP164, SIK3, BACE1, CADM1, RNF214, LINC00900, APOA1, APOA4, APOC3, IL10RA, ARCN1, KMT2A, FXYD2, PAFAH1B2, SIDT2, FXYD6, NXPE4, TMPRSS4, IFT46, DSCAML1, SCN2B, SCN4B, TAGLN, TMPRSS13, BUD13, TMEM25, ZPR1, CD3D, PCSK7, CD3E, CD3G, UBE4A) 0.135189573239057 73 0.0552710183028263 0.731972982306378 4048 0.351590504721665 2 2 0 -6.80494079685664 LTS-017 chr11 118471528 118471574 47 * ARCN1 NA 0 NA 0.767 1 NA NA NA NA NA LTS-017 chr11 118471575 119370216 898642 * c(USP2-AS1, MIR3656, MIR4492, HYOU1, TREH, DDX6, DPAGT1, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, ARCN1, MCAM, TRAPPC4, VPS11, RPS25, ABCG4, CXCR5, RPL23AP64, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, CBL, USP2, C2CD2L) 0.139474743297253 20 0.0490441262108876 0.756567939467686 2587 0.158509586159684 2 2 0 -6.86899060735989 LTS-017 chr11 119370217 119879824 509608 * c(USP2-AS1, NECTIN1) NA 0 NA 0.794669647442692 187 0.274413336937896 2 NA NA -5.82311255731403 LTS-017 chr11 119879825 119981928 102104 * character(0) NA 0 NA 2.11 1 NA NA NA NA NA LTS-017 chr11 119981929 120176241 194313 * c(OAF, TRIM29, POU2F3, LOC649133) 0.343 1 NA 1.87652158180753 273 0.473733953933036 7 7 0 -5.76492635202106 LTS-017 chr11 120176242 123396926 3220685 * c(MIR4493, TBCEL, TMEM136, ARHGEF12, POU2F3, GRIK4, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, CLMP, C11orf63, UBASH3B) 0.318458489041542 65 0.062751811956677 1.89302191807492 2084 0.660631053550642 7 5 2 -6.74882282198301 LTS-017 chr11 123396927 123430973 34047 * GRAMD1B NA 0 NA 2.592 1 NA NA NA NA NA LTS-017 chr11 123430974 134244123 10813150 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, OR8G2, OR8B8, OR8B2, ACAD8, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, DCPS, ZBTB44, THYN1, DDX25, APLP2, TMEM225, OR8D4, STT3A, KCNJ1, NA NA NA NA NA NA NA NA NA LTS-017 KCNJ5, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.305591234236658 188 0.0567737163134015 2.00940553414161 7956 0.888703668184068 7 5 2 -6.74639866899859 LTS-017 NA NA NA NA LTS-017 chr11 134244124 134856681 612558 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 2.02062771971026 61 0.345740589447141 7 NA NA -5.76994926282181 LTS-017 chr12 90923 90953 31 * LOC100288778 0.454 1 NA 1.192 1 NA NA NA NA NA LTS-017 chr12 90954 4921599 4830646 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA6, IQSEC3, NDUFA9, NINJ2, ITFG2, PRMT8, PARP11, C12orf4, TIGAR, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, TEAD4, TULP3, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, DYRK4, NA NA NA NA NA NA NA NA NA LTS-017 CCND2, CACNA2D4) 0.153347917989586 119 0.0457809274702892 0.709071458681499 4784 0.199763705287892 2 2 0 -6.73960347327571 LTS-017 NA NA NA NA LTS-017 chr12 4921600 7654076 2732477 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ANO2, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, NA NA NA NA NA NA NA NA NA LTS-017 RBP5, ACRBP, SPSB2, CD4, CD9, CD163, CD27, CLSTN3, NCAPD2) 0.149112698306993 55 0.0575498788199293 0.751022681268135 4471 0.213147355164338 2 2 0 -6.87895476482081 LTS-017 NA NA NA NA LTS-017 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.659 1 NA NA NA NA NA LTS-017 chr12 7655021 9447474 1792454 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.164233217125691 38 0.0610120665256916 0.665040353143432 2031 0.225192824963162 2 2 0 -6.83411185513673 LTS-017 chr12 9447475 9450393 2919 * LOC642846 NA 0 NA 0.158 1 NA NA NA NA NA LTS-017 chr12 9450394 9459939 9546 * LOC642846 0.238542942679504 5 0.0882156448709638 0.489317237860268 49 0.516475388117006 1 1 0 -6.73775398143752 LTS-017 chr12 9459940 9462525 2586 * LOC642846 NA 0 NA 0.575 1 NA NA NA NA NA LTS-017 chr12 9462526 9590154 127629 * c(DDX12P, LOC642846) 0.193425405729211 6 0.13867612147254 0.728666165548613 105 0.322535058434605 2 2 0 -6.79208616238638 LTS-017 chr12 9590155 9590570 416 * DDX12P NA 0 NA 0.31 1 NA NA NA NA NA LTS-017 chr12 9590571 9717935 127365 * DDX12P NA 0 NA 0.216654339308833 97 0.0761815703308589 0 NA NA -5.7727454568754 LTS-017 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.496 1 NA NA NA NA NA LTS-017 chr12 9747241 10573116 825876 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.164754674813085 25 0.0567233637930615 0.634620046595673 1088 0.167014052735745 2 2 0 -6.95971069683067 LTS-017 chr12 10573117 10598627 25511 * c(KLRC1, KLRC2, KLRC3) 0.169593473770901 8 0.0946586913977943 1.01921997723581 79 0.50378109346528 2 2 0 -6.76679424734917 LTS-017 chr12 10598628 11061906 463279 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, MAGOHB, STYK1, PRB4, PRH1, YBX3) 0.156931872578912 10 0.0665519012166862 0.628978178331761 501 0.166212995377423 2 2 0 -6.86529013217475 LTS-017 chr12 11061907 11061973 67 * c(PRH1-PRR4, TAS2R13, PRB4) NA 0 NA 0.67 1 NA NA NA NA NA LTS-017 chr12 11061974 11150054 88081 * c(PRH1-PRR4, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH2) 0.078 1 NA 0.691050778102765 117 0.132012231055484 2 2 0 -5.76549147045334 LTS-017 chr12 11150055 11174202 24148 * c(PRH1-PRR4, TAS2R20, PRB4) 0.319 1 NA 0.637170387263256 9 0.136363281144319 2 2 0 -5.77220103795861 LTS-017 chr12 11174203 11244878 70676 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.272018680110649 38 0.0746793810721925 0.827584189451388 126 0.256452382163747 4 3 1 -6.8716641293178 LTS-017 chr12 11244879 11285580 40702 * c(PRH1-PRR4, TAS2R43, PRB4) 0.071 1 NA 0.670834740640761 3 0.491137455301467 2 2 0 -5.76464900875876 LTS-017 chr12 11285581 32135441 20849861 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, ABCC9, MIR3974, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, TAS2R30, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-017 SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RECQL, MRPS35, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.146353323371403 250 0.0546772547293567 0.71027618524209 10923 0.210621729492752 2 2 0 -6.75630435928686 LTS-017 NA NA NA NA LTS-017 chr12 32135442 32146059 10618 * KIAA1551 NA 0 NA 0.664140910763358 87 0.102689589691756 2 NA NA -5.76648411955376 LTS-017 chr12 32146060 32259762 113703 * RNU6-78P NA 0 NA 1.114 1 NA NA NA NA NA LTS-017 chr12 32259763 32260876 1114 * BICD1 0.337 1 NA 0.973381237170433 25 0.38030922944362 3 3 0 -5.76441270029104 LTS-017 chr12 32260877 33535289 1274413 * c(DNM1L, FGD4, SYT10, YARS2, PKP2, BICD1) 0.341548348209782 24 0.0691125814381396 0.971372685874602 728 0.23076962409588 3 2 1 -6.83579919868961 LTS-017 chr12 33535290 34182671 647382 * c(SYT10, ALG10) NA 0 NA 1.03823534789671 103 0.22620603439806 3 NA NA -5.82272483778272 LTS-017 chr12 38710341 38710459 119 * character(0) 0.387 1 NA 0.49003522028479 5 0.251621739919269 1 1 0 -5.76441533004377 LTS-017 chr12 38710460 45567542 6857083 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, KIF21A, TWF1, ADAMTS20, PUS7L, RACGAP1P, TMEM117, ZCRB1) 0.370952195878402 67 0.0751233750805409 0.902156456733931 3447 0.225765035299956 3 2 1 -6.94722343014024 LTS-017 chr12 45567543 45567778 236 * PLEKHA8P1 NA 0 NA 1.068 1 NA NA NA NA NA LTS-017 chr12 45567779 52886531 7318753 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, KRT80, GRASP, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, C12orf80, LINC00592, TMPRSS12, KRT6C, RACGAP1, SENP1, NR4A1, C1QL4, ANKRD33, H1FNT, OR8S1, AMIGO2, NA NA NA NA NA NA NA NA NA LTS-017 AQP2, AQP5, AQP6, ARF3, KRT6A, KRT6B, KRT7, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, LINC00938, FIGNL2, ASIC1, ATF1, SLC11A2, DHH, PLEKHA8P1, FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, ATG101, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.354300255931567 216 0.0602742224388796 0.970246762232793 10874 0.769001201687279 3 2 1 -6.77370086153915 LTS-017 NA NA NA NA LTS-017 chr12 52886532 52886915 384 * KRT6A NA 0 NA 0.682 1 NA NA NA NA NA LTS-017 chr12 52886916 53005141 118226 * c(KRT71, KRT74, KRT72, KRT73, KRT5, KRT6A) 0.20450157891817 2 0.303348809129029 0.759371879060755 337 0.185250224754286 2 2 0 -6.76404423252709 LTS-017 chr12 53005142 53007557 2416 * KRT73 NA 0 NA 0.961 1 NA NA NA NA NA LTS-017 chr12 53007558 54675814 1668257 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, SP7, KRT78, EIF4B, TNS2, CBX5, SMUG1, AMHR2, LOC283335, ZNF740, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT8, KRT18, LOC400043, MIR196A2, FLJ12825, PCBP2, KRT76, CSAD, ATP5G2, PFDN5, PRR13, CALCOCO1, RARG, C12orf10, SP1, TARBP2, NA NA NA NA NA NA NA NA NA LTS-017 MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ESPL1) 0.359636632752475 59 0.0639595914587289 0.996848458291363 3608 0.228813695437958 3 2 1 -6.78972308357994 LTS-017 NA NA NA NA LTS-017 chr12 54675815 54676052 238 * HNRNPA1 NA 0 NA 1.303 1 NA NA NA NA NA LTS-017 chr12 54676053 54739376 63324 * c(COPZ1, HNRNPA1, MIR148B, NFE2) 0.482 1 NA 1.3715505318543 112 0.250919492464897 5 5 0 -5.76599417140179 LTS-017 chr12 54739377 54740333 957 * COPZ1 NA 0 NA 1.129 1 NA NA NA NA NA LTS-017 chr12 54740334 54973253 232920 * c(GTSF1, COPZ1, ZNF385A, NCKAP1L, ITGA5, PDE1B, GPR84, PPP1R1A) 0.305068543414213 4 0.0185202591774522 1.09874694935606 666 0.208376602879077 4 3 1 -6.96003666211189 LTS-017 chr12 54973254 56095340 1122087 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, METTL7B, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.347710840653874 33 0.0537465643722293 0.983572274697895 934 0.369847379014964 3 2 1 -6.8351757960684 LTS-017 chr12 56095341 56096622 1282 * ITGA7 NA 0 NA 1.298 1 NA NA NA NA NA LTS-017 chr12 56096623 56236770 140148 * c(BLOC1S1-RDH5, GDF11, BLOC1S1, ORMDL2, ITGA7, MMP19, RDH5, SARNP, DNAJC14, CD63) 0.282950961201367 3 0.0138924439894498 1.17713517779015 500 0.239420925951695 4 3 1 -7.09692720778437 LTS-017 chr12 56236771 56295181 58411 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-017 chr12 56295182 57550010 1254829 * c(CDK2, RNF41, CNPY2, PTGES3, BAZ2A, GPR182, SDR9C7, MYL6B, CS, DGKA, ERBB3, NEMP1, ESYT1, SNORD59A, GLS2, ANKRD52, SLC39A5, SPRYD4, APOF, LRP1, MIP, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, RAB5B, RBMS2, RPL41, RPS26, IKZF4, PMEL, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PYM1, ZC3H10, RDH16, HSD17B6, TIMELESS, COQ10A, ZBTB39, PAN2) 0.340713633594596 42 0.0523001033747366 1.01683422374819 4198 0.217145259924268 3 2 1 -6.98009368027001 LTS-017 chr12 57550011 57550478 468 * LRP1 NA 0 NA 1.47 1 NA NA NA NA NA LTS-017 chr12 57550479 57607087 56609 * c(MIR1228, LRP1) 0.289946802413472 3 0.0241936630821654 1.31742133943605 411 0.2320293164221 4 3 1 -6.75643043879531 LTS-017 chr12 57607088 74934019 17326932 * c(LOC100130075, AGAP2-AS1, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, TSFM, CTDSP2, CDK4, TMEM5, DCTN2, CCT2, AVIL, FRS2, OS9, CPSF6, WIF1, IRAK3, NXPH4, XPOT, MBD6, ARHGEF25, C12orf56, AGAP2, RAB3IP, LRIG3, TPH2, CPM, BEST3, C12orf66, CYP27B1, DDIT3, DTX3, ZFC3H1, RPSAP52, R3HDM2, RAB21, MON2, TBC1D30, GRIP1, LEMD3, STAC3, MSRB3, B4GALNT1, METTL21B, KCNMB4, NA NA NA NA NA NA NA NA NA LTS-017 GLI1, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, IFNG, INHBC, LRRC10, KIF5A, FLJ41278, LRP1, MIRLET7I, LYZ, MIR26A2, MARS, MDM2, METTL1, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NDUFA4L2, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TSPAN31, ARHGAP9, SHMT2, TBC1D15, SLC26A10, MIR548C, TSPAN8, MRS2P2, PIP4K2C, YEATS4, HMGA2, THAP2, INHBE, LLPH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 DYRK2, LGR5, ATP23, SLC16A7, HELB, MARCH9, USP15) 0.368027943737356 199 0.0834851426737505 0.949126665629952 10485 0.285796395944893 3 2 1 -6.73355140833242 LTS-017 NA NA NA NA LTS-017 chr12 74934020 77158179 2224160 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, ATXN7L3B, BBS10, CAPS2) 0.346368578170999 21 0.0606665358449662 0.859921109718034 1222 0.362781862745221 3 2 1 -6.91897852556934 LTS-017 chr12 77158180 77158259 80 * ZDHHC17 NA 0 NA 1.143 1 NA NA NA NA NA LTS-017 chr12 77158260 92539520 15381261 * c(MIR1252, POC1B-GALNT4, MIR4699, MIR548AL, KERA, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, ZDHHC17, LINC01619, MGAT4C, POC1B, OTOGL, CCDC59, LINC00936, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, MYF5, MYF6, PPP1R12A, ATP2B1, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, GALNT4, LIN7A, NAV3, C12orf29, RASSF9) 0.360378309499233 93 0.0820726695977666 0.951193462631748 4777 0.288297146033756 3 2 1 -6.74035800117091 LTS-017 chr12 92539521 92539590 70 * BTG1 0.312 1 NA 0.184 1 NA NA NA NA NA LTS-017 chr12 92539591 92818786 279196 * c(CLLU1OS, CLLU1, BTG1) 0.236 1 NA 0.58703248487797 34 0.108577863335107 2 2 0 -6.20170023486693 LTS-017 chr12 92818787 113269541 20450755 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, METAP2, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, KRT19P2, ALDH1L2, SLC5A8, PPTC7, NA NA NA NA NA NA NA NA NA LTS-017 CCDC63, DAO, FAM71C, RMST, ELK3, ALDH2, RPH3A, UHRF1BP1L, CUX2, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, MYO1H, HECTD4, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, C12orf76, LTA4H, MIR135A2, ASCL1, PLEKHG7, MIR331, MVK, MYBPC1, MYL2, NFYB, ATP2A2, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MAPKAPK5-AS1, CDK17, ANAPC7, NT5DC3, VPS29, SLC25A3, PMCH, SSH1, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPN11, NTN4, TRPV4, RFX4, RPL6, ATXN2, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, GNPTAB, TCTN1, NAA25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, HVCN1, USP30, FAM222A, FAM222A-AS1, MAPKAPK5, CRADD, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, NR1H4) 0.147179927310137 296 0.0527194508197119 0.696244854917143 17551 0.384970768985615 2 2 0 -6.7455115039299 LTS-017 NA NA NA NA LTS-017 chr12 113269542 113269597 56 * RPH3A 0.138 1 NA 2.476 1 NA NA NA NA NA LTS-017 chr12 113269598 117289613 4020016 * c(LINC00173, MIR4472-2, SDS, SDSL, IQCD, DTX1, PLBD2, RPH3A, MED13L, TBX5-AS1, CFAP73, OAS1, OAS2, OAS3, TPCN1, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, RNFT2, RITA1, RBM19) 0.132366718357013 50 0.0519154886251076 0.732299702537691 2498 0.197049807402172 2 2 0 -6.89510829942548 LTS-017 chr12 117289614 117290433 820 * RNFT2 0.101 1 NA 0.931665619432931 17 0.526490154089268 3 3 0 -5.76441086009661 LTS-017 chr12 117290434 118105453 815020 * c(FBXO21, FBXW8, KSR2, NOS1, TESC, RNFT2, HRK) 0.13369876763105 10 0.0417214306775041 0.718290141377961 743 0.214604907045638 2 2 0 -6.82767411733725 LTS-017 chr12 118105454 124330508 6225055 * c(MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4498, MIR4700, MPHOSPH9, CAMKK2, TMED2, GCN1, RAB35, SNRNP35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HSPB8, HCAR1, MORN3, KSR2, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, TMEM233, KMT5A, MSI1, P2RX4, P2RX7, PEBP1, ARL6IP4, NA NA NA NA NA NA NA NA NA LTS-017 TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, SBNO1, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PITPNM2, DDX55, PXN, RFC5, BCL7A, RPLP0, CLIP1, SUDS3, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, SRRM4, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.105172366643244 245 0.0400320931808837 0.958071182733463 8802 0.550651914875758 3 3 0 -6.74705399664809 LTS-017 NA NA NA NA LTS-017 chr12 124330509 133419709 9089201 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-017 CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.114857702555357 115 0.0525037312974283 0.994507069885494 5315 0.333248256780041 3 3 0 -6.83405918078376 LTS-017 NA NA NA NA LTS-017 chr12 133419710 133420534 825 * CHFR NA 0 NA 0.697 1 NA NA NA NA NA LTS-017 chr12 133420535 133812415 391881 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.108075872928492 48 0.0456415215884374 0.911576831830304 1001 0.24579976516556 3 3 0 -6.74259343047577 LTS-017 chr12 133812416 133812708 293 * ANHX NA 0 NA 0.756617265603954 7 0.0570634567410536 2 NA NA -5.76468718082686 LTS-017 chr13 19271620 19271676 57 * character(0) 0.458 1 NA 0.961 1 NA NA NA NA NA LTS-017 chr13 19271677 21722557 2450881 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00417, SAP18, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, TUBA3C, ZMYM2, IFT88, ZMYM5, TPTE2) 0.34203702451192 13 0.0574105770653314 0.934345617021268 1366 0.230922132683134 3 2 1 -6.87496250765796 LTS-017 chr13 21722558 21727828 5271 * c(SAP18, SKA3) 0.091 1 NA 1.02521236232368 17 0.174351213325963 3 3 0 -5.76500225662841 LTS-017 chr13 21727829 21728497 669 * SKA3 0.121788611325426 9 0.102539965108461 1.04621807346227 25 0.475739886913006 11 10 1 -6.73499158147098 LTS-017 chr13 21728498 21728599 102 * SKA3 0.455 1 NA 0.736117034663152 3 0.181427671538826 2 2 0 -5.76441374617672 LTS-017 chr13 21728600 22277901 549302 * c(SKA3, MICU2, FGF9, ZDHHC20, MIPEPP3, MRPL57) 0.232484139480124 11 0.141319045875893 0.908171137806864 330 0.259365028496164 3 3 0 -7.15594032983886 LTS-017 chr13 22277902 24463556 2185655 * c(SACS-AS1, LINC00327, LINC00424, FGF9, SACS, MIPEP, C1QTNF9B-AS1, TNFRSF19, SGCG, BASP1P1) 0.295708751906636 17 0.0849387755282315 1.20238086530836 680 0.226839075033502 4 3 1 -6.73372329333481 LTS-017 chr13 24463557 24465199 1643 * c(MIPEP, C1QTNF9B-AS1) NA 0 NA 0.273 1 NA NA NA NA NA LTS-017 chr13 24465200 24695845 230646 * c(SPATA13, C1QTNF9B, ANKRD20A19P, C1QTNF9B-AS1) 0.39772724103068 2 0.0643467170879758 0.641864714180951 39 0.407239091275491 2 1 1 -6.97070389112674 LTS-017 chr13 24695846 24736548 40703 * SPATA13 NA 0 NA 1.369 1 NA NA NA NA NA LTS-017 chr13 24736549 24890275 153727 * c(MIR2276, SPATA13-AS1, SPATA13, C1QTNF9) 0.281999642986078 9 0.121694745618334 1.15228451216992 225 0.407847950922189 4 3 1 -6.73976582114254 LTS-017 chr13 24890276 24896629 6354 * c(SPATA13, C1QTNF9) 0.313437125307998 5 0.206260272471458 2.18505007477863 50 1.29639301186966 10 7 3 -6.73319568671571 LTS-017 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.833 1 NA NA NA NA NA LTS-017 chr13 24995032 25525544 530513 * c(PARP4, TPTE2P6, ATP12A, CENPJ, RNF17, TPTE2P1) 0.29683896685296 19 0.0691422806303078 1.13446446339985 600 0.343856891393042 4 3 1 -6.74175634010159 LTS-017 chr13 25525545 25670851 145307 * c(PABPC3, TPTE2P1) 0.141 1 NA 1.05203417746626 47 0.289319933727014 3 3 0 -5.77507450344545 LTS-017 chr13 25670852 26149015 478164 * c(AMER2, PABPC3, ATP8A2, MTMR6, NUP58) 0.136288091702036 14 0.0967736965897674 1.15179926737844 756 0.400980148159372 3 3 0 -6.83827166831724 LTS-017 chr13 26149016 26155953 6938 * ATP8A2 0.328 1 NA 1.15245704712369 17 0.257228854959022 4 4 0 -5.76450132739933 LTS-017 chr13 26155954 26434456 278503 * ATP8A2 NA 0 NA 1.14152498644807 59 0.179681442576984 4 NA NA -5.77611737048474 LTS-017 chr13 26434457 26434920 464 * ATP8A2 NA 0 NA 0.774 1 NA NA NA NA NA LTS-017 chr13 26434921 28973360 2538440 * c(PAN3-AS1, CDK8, CDX2, WASF3, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, PAN3, SNORD102, GPR12, GTF3A, PDX1, RASL11A, SHISA2, ATP5EP2, POLR1D, ATP8A2, RNF6, RPL21, SNORA27, URAD) 0.372522612197691 40 0.0792951925661484 0.919296489108724 1704 0.268700602751007 3 2 1 -6.75765216976769 LTS-017 chr13 28973361 28979889 6529 * FLT1 NA 0 NA 1.11 1 NA NA NA NA NA LTS-017 chr13 28979890 30088607 1108718 * c(MTUS2-AS1, FLT1, MTUS2, SLC46A3, POMP, SLC7A1) 0.349744888200791 7 0.0234226182912809 1.15277602589638 421 0.21718735254011 3 2 1 -7.61246473361959 LTS-017 chr13 30088608 30777202 688595 * c(LINC00297, LINC00544, UBL3, SLC7A1, KATNAL1) 0.294 1 NA 1.11093327138701 187 0.199918008752786 4 4 0 -5.8216536413275 LTS-017 chr13 30777203 33262793 2485591 * c(LINC00426, MINOS1P1, TEX26-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, ALOX5AP, HMGB1, ZAR1L, BRCA2, KATNAL1, MEDAG, N4BP2L1) 0.279780256293048 31 0.0581848740644205 1.10892916520267 1706 0.247248394532726 4 3 1 -6.90890147008472 LTS-017 chr13 33262794 33268318 5525 * PDS5B NA 0 NA 1.197 1 NA NA NA NA NA LTS-017 chr13 33268319 36220198 2951880 * c(MIR548F5, LINC00423, LINC00457, STARD13-AS, PDS5B, NBEA, RFC3, STARD13, KL) 0.275578812816706 16 0.0353664153305553 1.22766917088729 832 0.284177197865303 4 3 1 -6.90706149718861 LTS-017 chr13 36220199 36220330 132 * c(MIR548F5, NBEA) NA 0 NA 1.409 1 NA NA NA NA NA LTS-017 chr13 36220331 37559811 1339481 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, SPG20, NBEA, ALG5, SERTM1, SMAD9, SOHLH2, RFXAP, CCDC169, CCNA1, DCLK1) 0.233150048510868 5 0.02524480144505 1.41004930468216 879 0.501944832660093 5 4 1 -6.84211851554864 LTS-017 chr13 37559812 37679684 119873 * c(EXOSC8, CSNK1A1L, ALG5, SUPT20H) 0.309688083190956 7 0.0460279418241944 1.14044983963691 253 0.257887503068024 4 3 1 -6.80361840031851 LTS-017 chr13 37679685 37679729 45 * CSNK1A1L 0.351 1 NA 0.419 1 NA NA NA NA NA LTS-017 chr13 37679730 38138730 459001 * c(POSTN, CSNK1A1L, LINC00547) 0.256562789816231 4 0.174967377911808 0.751658597094534 32 0.611697742372974 4 3 1 -6.91587662849592 LTS-017 chr13 38138731 38153130 14400 * POSTN 0.489 1 NA 0.668022288658791 35 0.157118565731358 2 2 0 -5.76538477694025 LTS-017 chr13 38153131 39917634 1764504 * c(LINC00366, LINC00571, LHFP, POSTN, STOML3, FREM2, NHLRC3, UFM1, TRPC4, PROSER1) 0.449371509226119 24 0.051248683263396 0.73271962741561 897 0.189479318036269 2 1 1 -6.80649485128187 LTS-017 chr13 39917635 40175554 257920 * LHFP NA 0 NA 0.843370094674951 33 0.126694634073548 3 NA NA -5.89967447904101 LTS-017 chr13 40175555 40229697 54143 * LHFP NA 0 NA 0.363 1 NA NA NA NA NA LTS-017 chr13 40229698 40229724 27 * character(0) 0.286 1 NA 0.098 1 NA NA NA NA NA LTS-017 chr13 40229725 52440087 12210363 * c(LINC00462, TPT1-AS1, MIR320D1, MIR4305, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, NA NA NA NA NA NA NA NA NA LTS-017 ZC3H13, LRCH1, SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.233841544390261 137 0.0786074498516324 0.450092193797397 6354 0.307456822940255 1 1 0 -6.75589080426662 LTS-017 NA NA NA NA LTS-017 chr13 52440088 52440130 43 * CCDC70 0.21 1 NA 0.806 1 NA NA NA NA NA LTS-017 chr13 52440131 79940811 27500681 * c(MIR1297, MIR759, MIR3169, MIR3665, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00381, LINC00446, DIAPH3-AS1, DIAPH3-AS2, MYCBP2-AS1, RNF219-AS1, LINC00348, MRPS31P5, PIBF1, OLFM4, SUGT1, LECT1, KLF12, KCTD12, CLN5, SLAIN1, HNRNPA1L2, DACH1, COMMD6, EDNRB, TPTE2P3, DIS3, MYCBP2, FBXL3, CKAP2, PCDH17, OR7E156P, LINC00550, LINC00347, NEK5, LMO7, ALG11, MZT1, NEK3, PCDH8, PCDH9, VPS36, ATP7B, NA NA NA NA NA NA NA NA NA LTS-017 POU4F1, THSD1, KLHL1, ATXN8OS, RBM26, CTAGE11P, PCDH20, KLF5, BTF3P11, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, RNF219, BORA, TDRD3, DIAPH3, CCDC70, SCEL, UTP14C, TBC1D4) 0.222730767396214 72 0.0721556687452994 0.477041770552568 4905 0.215689522884779 1 1 0 -7.29133673258088 LTS-017 NA NA NA NA LTS-017 chr13 79940812 84452567 4511756 * c(RBM26-AS1, NDFIP2-AS1, SPRY2, SLITRK1, NDFIP2, RBM26) 0 1 NA 0.491865729615092 135 0.269662604335294 1 1 0 -5.95088831054454 LTS-017 chr13 84452568 90013381 5560814 * c(MIR4500, LINC00333, LINC00351, LINC00433, SLITRK1, SLITRK5, MIR4500HG, SLITRK6) NA 0 NA 0.486670920691879 269 0.103150238904479 1 NA NA -6.75756004598701 LTS-017 chr13 92002859 98676580 6673722 * c(GPC6, GPC5-AS1, GPC6-AS2, CLDN10-AS1, LINC00359, MBNL2, ABCC4, SOX21, GPR180, DCT, GPC5, DZIP1, TGDS, HS6ST3, OXGR1, IPO5, MIR19B1, MIR17HG, UGGT2, DNAJC3, RAP2A, CLDN10) 0.109628090869701 19 0.0459475291892447 0.995456828146465 1585 0.253305021960984 3 3 0 -6.8628988434142 LTS-017 chr13 98676581 98828065 151485 * c(FARP1, RNF113B) NA 0 NA 1.424 1 NA NA NA NA NA LTS-017 chr13 98828066 101717956 2889891 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, PCCA-AS1, NALCN-AS1, FARP1, RNF113B, CLYBL, GPR183, DOCK9, NALCN, GPR18, UBAC2, PCCA, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, TM9SF2) 0.0708987104959875 14 0.030095908962245 1.32732531145462 1638 0.41681152205962 5 5 0 -6.80616782950198 LTS-017 chr13 101717957 103719231 2001275 * c(BIVM-ERCC5, MIR2681, MIR4705, METTL21EP, METTL21C, ERCC5, FGF14, NALCN, FGF14-IT1, FGF14-AS2, BIVM, CCDC168, SLC10A2, TPP2, KDELC1, TEX30, ITGBL1) 0.0881666624006792 23 0.0219770811269754 1.19142150186531 1436 0.331746809595983 4 4 0 -6.73329498358475 LTS-017 chr13 106118519 115064542 8946024 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, UPF3A, SOX1, TFDP1, LINC00460, FAM155A, CARS2, GRTP1, NA NA NA NA NA NA NA NA NA LTS-017 CUL4A, ABHD13, IRS2, PROZ, ARHGEF7, CDC16) 0.0647331102241677 112 0.0224688526723516 1.59008094227981 4496 0.497629938912715 6 6 0 -6.81845999728765 LTS-017 NA NA NA NA LTS-017 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 1.43041420609534 85 0.240507517775313 5 NA NA -5.76443505959942 LTS-017 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.342 1 NA 0.785164686673685 5 0.442025225524517 2 2 0 -5.79217602503786 LTS-017 chr14 20201562 20404649 203088 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.328544068130252 7 0.074462518535614 1.1065742080198 195 0.272076141070442 4 3 1 -6.86892081809084 LTS-017 chr14 20404650 20404736 87 * OR4K1 0.363 1 NA 0.632 1 NA NA NA NA NA LTS-017 chr14 20404737 21945859 1541123 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K1, OR4K15, RNASE7, RAB2B, NA NA NA NA NA NA NA NA NA LTS-017 RPPH1, TMEM55B, TTC5, TOX4) 0.450785328899158 82 0.07825437120357 0.734058037746685 2891 0.192088168026945 2 1 1 -6.79087898687952 LTS-017 NA NA NA NA LTS-017 chr14 21945860 21950630 4771 * TOX4 NA 0 NA 1.038 1 NA NA NA NA NA LTS-017 chr14 21950631 22005422 54792 * c(METTL3, SALL2, TOX4) 0 1 NA 0.969664146748881 254 0.282647706512367 3 3 0 -5.76457058849415 LTS-017 chr14 22005423 22033604 28182 * character(0) NA 0 NA 0.757 1 NA NA NA NA NA LTS-017 chr14 22033605 22934808 901204 * c(OR10G3, OR10G2, OR4E2) 0.43201041791991 24 0.0972784737199107 0.781947792379699 780 0.207668739629983 2 1 1 -6.86997069422959 LTS-017 chr14 22934809 22948471 13663 * character(0) 0.49 1 NA 0.82455772281837 55 0.241198784972176 3 3 0 -5.76726416997566 LTS-017 chr14 22948472 23009253 60782 * character(0) 0.44956615603734 15 0.0436961369110861 0.776317542114148 259 0.165451583137108 2 1 1 -6.7846585629023 LTS-017 chr14 23009254 23316554 307301 * c(MRPL52, DAD1, MMP14, OXA1L, ABHD4, SLC7A7) 0.448821922675353 24 0.0549790309170661 0.686248110748219 490 0.146674979765051 2 1 1 -6.76028192616561 LTS-017 chr14 23316555 23568494 251940 * c(MIR4707, PRMT5, PSMB11, REM2, ACIN1, LRP10, MMP14, HAUS4, C14orf119, RBM23, PSMB5, C14orf93, CDH24, AJUBA) 0.440019161144585 12 0.074572874668767 0.83970898811185 966 0.164296040699005 2 1 1 -6.9018736563598 LTS-017 chr14 23568495 23569009 515 * C14orf119 0 1 NA 0.884289808296172 7 0.443878683554736 3 3 0 -5.76441834345932 LTS-017 chr14 23569010 23744829 175820 * c(CEBPE, SLC7A8, C14orf119, HOMEZ) 0.342108251905055 11 0.214783781341312 0.854615456091364 321 0.248765604912927 3 2 1 -6.7620181871445 LTS-017 chr14 23744830 23744932 103 * HOMEZ 0.365 1 NA 0.844424334357964 3 0.154936546151427 3 3 0 -5.76444596314658 LTS-017 chr14 23744933 23829518 84586 * c(BCL2L2-PABPN1, EFS, SLC22A17, HOMEZ, BCL2L2, PABPN1, PPP1R3E) 0.430051885514461 8 0.0377413660892887 0.899517664233449 353 0.22289691078038 2 1 1 -6.82274852920587 LTS-017 chr14 23829519 23829706 188 * EFS NA 0 NA 0.387 1 NA NA NA NA NA LTS-017 chr14 23829707 34081592 10251886 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, MIR548AI, DHRS2, EFS, IRF9, TM9SF1, DHRS4, RIPK3, AP4S1, DTD2, DHRS1, CMTM5, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, NGDN, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, RNF31, NA NA NA NA NA NA NA NA NA LTS-017 DHRS4-AS1, G2E3, PRKD1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, NPAS3, CBLN3, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, JPH4, ARHGAP5-AS1, ZFHX2, AP1G2, CARMIL3, CPNE6, AKAP6, REC8) 0.445848154398989 129 0.0800351515554017 0.730857293085419 6581 0.17469114498749 2 1 1 -7.00385381234598 LTS-017 NA NA NA NA LTS-017 chr14 34081593 37147341 3065749 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, NKX2-8, IGBP1P1, FAM177A1, NFKBIA, PAX9, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, SLC25A21, KIAA0391) 0.432160073037127 15 0.0463606976405046 0.693432970202228 1867 0.198719335160542 2 1 1 -6.75493239343626 LTS-017 chr14 37147342 37147394 53 * SLC25A21 0 1 NA 4.279 1 NA NA NA NA NA LTS-017 chr14 37147395 38019142 871748 * c(SLC25A21-AS1, MIR4503, MIPOL1, SLC25A21) 0.309731759167299 12 0.145893796989454 0.752100671683677 298 0.227636971281943 2 1 1 -7.21006991874982 LTS-017 chr14 38019143 38019733 591 * MIPOL1 0.432 1 NA 0.808029199876875 11 0.372404154844511 2 2 0 -5.76445839326014 LTS-017 chr14 38019734 73989983 35970250 * c(MED6, SNORD127, KTN1-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, NA NA NA NA NA NA NA NA NA LTS-017 C14orf37, FRMD6-AS1, ABHD12B, LOC145474, LRFN5, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, TMEM30B, MDGA2, EIF2S1, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, PCNX1, DAAM1, SAMD4A, FAM179B, SYNE2, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, FBXO33, PLEKHG3, SIPA1L1, DCAF4, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, FOXA1, ADAM20P1, C14orf39, SNORD56B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, HEATR4, FLJ22447, PLEKHD1, MAX, MGAT2, MIA2, MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, ATL1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, AP5M1, PRKCH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ACTR10, PSEN1, PSMA3, CCDC177, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, TRMT5, FANCM, PYGL, RBM25, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SSTR1, ZFP36L1, STYX, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, DPF3, SGPP1, TMX1, SYT16, FSCB, GEMIN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, PAPLN, NEMF, CHURC1, MAPK1IP1L, AKAP5, RGS6, SUSD6, KIAA0586, DLGAP5) 0.436292059981728 315 0.0765213997411175 0.699415732202098 20290 0.20039538137762 2 1 1 -6.75861499701797 LTS-017 NA NA NA NA LTS-017 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.299 1 NA NA NA NA NA LTS-017 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.42385222948021 43 0.16165138241047 1 NA NA -5.76676651063771 LTS-017 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.64 1 NA NA NA NA NA LTS-017 chr14 74035793 75515918 1480126 * c(MIR4505, MIR4709, NPC2, ACOT2, ISCA2, ACOT4, PTGR2, FAM161B, DLST, MLH3, PROX2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, YLPM1, ZNF410, ABCD4, ACOT1, ACOT6, SYNDIG1L, BBOF1, DNAL1, RPS6KL1, EIF2B2, ELMSAN1, LIN52, PNMA1, ENTPD5, AREL1) 0.442079970518713 93 0.0678155412798842 0.705745385286852 2980 0.698386913122743 2 1 1 -6.73481463161542 LTS-017 chr14 75515919 75544463 28545 * c(MLH3, ZC2HC1C, ACYP1) 0 1 NA 0.674730828897634 99 0.339173201971927 2 2 0 -5.76468264161122 LTS-017 chr14 75544464 75989030 444567 * c(BATF, TMED10, JDP2, FOS, LINC01220, ZC2HC1C, NEK9) 0.379450424187235 7 0.17156145643277 0.707583085957289 487 0.185578649929956 2 1 1 -6.80319576710862 LTS-017 chr14 75989031 88862502 12873472 * c(MIR1260A, DIO2-AS1, LINC00911, BATF, AHSA1, C14orf1, IFT43, NOXRED1, LRRC74A, ISM2, CEP128, SAMD15, DIO2, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FLRT2, GALC, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, KCNK10, FLVCR2, GPATCH2L, SPATA7, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, TSHR, SLIRP, GPR65, STON2, CIPC, ALKBH1, NRXN3, SPTLC2) 0.378331582000794 53 0.0436076733237865 0.966392709386061 4658 0.22992269063067 3 2 1 -6.79678234312919 LTS-017 chr14 88862503 89113378 250876 * c(PTPN21, EML5, SPATA7, ZC3H14) 0.40266775969192 10 0.0438336501889689 0.823426599104342 531 0.184702199647999 3 2 1 -7.14925952852458 LTS-017 chr14 89113379 89116319 2941 * EML5 NA 0 NA 1.354 1 NA NA NA NA NA LTS-017 chr14 89116320 103374095 14257776 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, FBLN5, CYP46A1, PAPOLA, FOXN3, CHGA, SERPINA3, ANKRD9, AK7, IFI27L1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, TTC7B, SYNE3, EML5, DIO3, DYNC1H1, EML1, RCOR1, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, NA NA NA NA NA NA NA NA NA LTS-017 SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, LGMN, KCNK13, C14orf132, PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, CLMN, CATSPERB, RIN3, C14orf159, CALM1, GPR68, TCL1A, IFI27L2, SETD3, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, EFCAB11, WDR20, RPS6KA5, TRIP11, TCL1B, TECPR2, GOLGA5) 0.368907402106035 251 0.0567481664059575 0.943103996274095 11716 0.231944238704914 3 2 1 -6.74330861300616 LTS-017 NA NA NA NA LTS-017 chr14 103374096 103374194 99 * TRAF3 NA 0 NA 1.067 1 NA NA NA NA NA LTS-017 chr14 103374195 105932757 2558563 * c(ZBTB42, LINC00605, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, LINC00637, LINC00638, EIF5, AKT1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, AMN, APOPT1, BTBD6, MTA1, EXOC3L4, BAG5, C14orf2, CDC42BPB) 0.360588043591397 128 0.0648088934276989 0.999763975580727 4416 0.269265162374779 3 2 1 -6.7973235103567 LTS-017 chr14 105932758 106066690 133933 * c(CRIP1, CRIP2, C14orf80, TMEM121, MTA1) 0.137 1 NA 1.03421115516298 263 0.268558823424841 3 3 0 -5.77229727584745 LTS-017 chr14 106066691 106318374 251684 * ELK2AP 0.236362786699494 8 0.164727426374602 1.10596250534561 163 0.503650099179975 5 4 1 -6.77626837978067 LTS-017 chr14 106318375 106318453 79 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-017 chr14 106318454 106780762 462309 * c(LINC00226, ADAM6, FAM30A) 0.354531030708373 15 0.100222751907938 0.84605759346114 332 0.327662877565899 3 2 1 -6.78120163666421 LTS-017 chr14 106780763 106791085 10323 * character(0) NA 0 NA 1.443 1 NA NA NA NA NA LTS-017 chr14 106791086 107283157 492072 * LINC00221 0.344697437980909 45 0.0667856892068075 1.26668755919114 248 0.635426146869363 6 4 2 -6.8041008670622 LTS-017 chr15 20169987 20446043 276057 * character(0) 0.457 1 NA 0.909934877119501 23 0.237713623501933 3 3 0 -5.77003581834012 LTS-017 chr15 20446044 21936464 1490421 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, GOLGA6L6, GOLGA8CP) 0.366217088879963 17 0.115224365529886 1.04130014377154 122 0.478450996072604 3 2 1 -6.76568999474312 LTS-017 chr15 21936465 22318963 382499 * c(POTEB, NF1P2, LOC646214, CXADRP2, LOC727924) 0.088 1 NA 1.32405713546776 7 1.035952701623 5 5 0 -5.76600910127252 LTS-017 chr15 22318964 22489960 170997 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.127976553597498 17 0.0821758337168466 0.988837936123347 145 0.743010955105058 3 3 0 -6.75840753099775 LTS-017 chr15 22489961 38992240 16502280 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-017 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, WHAMMP1, LOC100288637, LOC100289656, MIR1233-2, MIR3942, DPH6-AS1, MIR4508, MIR4510, MIR4715, TMCO5B, LOC100996255, RASGRP1, CHRM5, CHRNA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TUBGCP5, NIPA1, PWAR1, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, FAN1, GOLGA8A, CYFIP1, FAM189A1, NPAP1, LPCAT4, GABRA5, GABRB3, NUTM1, GABRG3, DKFZP434L187, GREM1, LOC283683, LOC283710, FAM98B, GOLGA6L1, GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, FMN1, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P10, HERC2P2, C15orf53, MIR211, MEIS2, TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, GOLGA8B, NDN, OCA2, LINC00929, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 EMC4, KLF13, MAGEL2, MTMR10, ZNF770, NOP10, NSMCE3, EMC7, AVEN, ATP10A, GJD2, RYR3, SCG5, PDCD6IPP2, REREP3, GOLGA8S, GOLGA8T, SNRPN, ACTC1, TJP1, ANP32AP1, SNORD116-19, GOLGA8O, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, KATNBL1, PWAR5, NIPA2, C15orf41, HERC2, SNURF, CHRFAM7A, ARHGAP11B, DPH6, AQR, ARHGAP11A, SLC12A6) 0.165060102229901 127 0.0733657536475566 0.68538066479939 7709 0.229516080138739 2 2 0 -6.89331700413033 LTS-017 NA NA NA NA LTS-017 chr15 39544130 43852706 4308577 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR4310, RAD51-AS1, GPR176, CHP1, CHST14, OIP5, TGM7, PLA2G4E, ZSCAN29, TTBK2, CDAN1, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, TUBGCP4, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf54, LTK, MAP1A, EIF2AK4, NDUFAF1, NUSAP1, SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, NA NA NA NA NA NA NA NA NA LTS-017 HAUS2, RMDN3, DNAJC17, PAK6, KNL1, STARD9, VPS18, RAD51, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, TP53BP1, OIP5-AS1, TYRO3, CHAC1, TMEM62, CAPN3, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, LCMT2) 0.15158896233768 179 0.0440235341447781 0.717480811568535 8998 0.188228330076438 2 2 0 -6.75905331269824 LTS-017 NA NA NA NA LTS-017 chr15 43852707 43910306 57600 * c(CKMT1B, STRC, PPIP5K1) 0.111977479583982 4 0.0759429610519193 0.546146811425814 133 0.27432871651117 3 3 0 -6.8709886769002 LTS-017 chr15 43910307 43920698 10392 * STRC NA 0 NA 0.146 1 NA NA NA NA NA LTS-017 chr15 43920699 44002839 82141 * c(CATSPER2, STRC, CKMT1A) 0.206 1 NA 0.15942904798409 226 0.20930017741859 0 0 0 -5.85227800020164 LTS-017 chr15 44002840 44005988 3149 * character(0) NA 0 NA 0.473 1 NA NA NA NA NA LTS-017 chr15 44005989 45059703 1053715 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.161439404540804 22 0.0376747300107815 0.687821334858148 1530 0.181192482084714 2 2 0 -6.7982866036766 LTS-017 chr15 45059704 45059802 99 * TRIM69 NA 0 NA 0.656 1 NA NA NA NA NA LTS-017 chr15 45059803 45120690 60888 * TRIM69 NA 0 NA 1.44356539489665 38 2.04350368748582 5 NA NA -5.76441013469062 LTS-017 chr15 45120691 45120706 16 * character(0) NA 0 NA 0.451 1 NA NA NA NA NA LTS-017 chr15 45120707 48787842 3667136 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.141573937923054 61 0.0518715837640012 0.724474671874173 2528 0.23141552487107 2 2 0 -6.78175053219109 LTS-017 chr15 48787843 48788289 447 * FBN1 NA 0 NA 0.619 1 NA NA NA NA NA LTS-017 chr15 48788290 57732774 8944485 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, PRTG, LINC00926, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, USP50, TEX9, TNFAIP8L3, SHC4, UNC13C, MYO5A, NEDD4, RSL24D1, ZNF280D, TRPM7, FLJ10038, NA NA NA NA NA NA NA NA NA LTS-017 MNS1, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, RFX7, MIR628, TCF12, ATP8B4, SPPL2A, CGNL1, USP8, CCPG1, COPS2, PIGB, SECISBP2L) 0.153607146803443 110 0.0516117022244512 0.680443376921617 6766 0.218363836369021 2 2 0 -6.86589194715043 LTS-017 NA NA NA NA LTS-017 chr15 57732775 57753932 21158 * CGNL1 NA 0 NA 0.726087551376957 26 0.104246601125187 2 NA NA -5.76550171507585 LTS-017 chr15 57753933 57840736 86804 * CGNL1 0.137 1 NA 0.918503128668436 71 0.186301953039246 3 3 0 -5.76619126019738 LTS-017 chr15 57840737 66829584 8988848 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, MGC15885, ZNF609, DAPK2, FOXB1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, LIPC, MIR190A, MYO1E, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, IGDCC4, SNORD16, NA NA NA NA NA NA NA NA NA LTS-017 SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, BNIP2, SNX1, HSP90AB4P, SCARNA14, TPM1, CA12, ICE2, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.109815482153858 164 0.0391262531297627 0.916477931544649 8544 0.273100606633609 3 3 0 -6.82938293645044 LTS-017 NA NA NA NA LTS-017 chr15 66829585 66832430 2846 * ZWILCH NA 0 NA 1.002 1 NA NA NA NA NA LTS-017 chr15 66832431 78385136 11552706 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, MIR4313, IQCH-AS1, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, FEM1B, HMG20A, CORO2B, ARID3B, CLK3, SENP8, HIGD2B, TMEM266, CSK, DRAIC, C15orf61, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, LCTL, ETFA, ITGA11, TBC1D2B, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, LOC283731, NA NA NA NA NA NA NA NA NA LTS-017 HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, SCAPER, PKM, PML, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZWILCH, UACA, IMP3, LARP6, GOLGA6B, MAP2K5, C15orf39, THAP10, PARP6, FAM219B, ISLR2, PTPN9, BBS4, CPLX3, RCN2, PPCDC, CELF6, RPLP1, STRA6, LOC645752, SH2D7, IQCH, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR629, MIR630, MIR631, TLE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LOC729739, TYRO3P, NOX5, NEIL1, AAGAB, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, CD276, ANP32A, LINC00597, ADPGK, SEMA7A, LINGO1, UBL7, PIAS1, PSTPIP1, LOC91450, CALML4, UBE2Q2, COX5A, STOML1, KIF23) 0.114519036621483 122 0.0464895254747201 0.961464955479931 10015 0.296379572467373 3 3 0 -6.74618312164282 LTS-017 NA NA NA NA LTS-017 chr15 78385137 78386431 1295 * SH2D7 NA 0 NA 0.653 1 NA NA NA NA NA LTS-017 chr15 78386432 102516492 24130061 * c(FAM138E, NA, UBE2Q2P2, LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB2, CIB1, MTHFS, MORF4L1, ABHD2, CHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, C15orf40, TARSL2, LRRC28, AGBL1, HYKK, WHAMM, FSD2, CRABP1, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, NA NA NA NA NA NA NA NA NA LTS-017 HAPLN3, MESP2, SPATA8, LINC00052, CTSH, CFAP161, ADAMTS17, ACAN, DNM1P46, CERS3, FAH, ALDH1A3, FES, CHSY1, MESDC2, ACSBG1, KIAA1024, SYNM, TMED3, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, OR4F4, SLCO3A1, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, FAM169B, ANPEP, LOC338963, IDH2, IDH3A, TMC3, ZNF774, IGF1R, ARPIN, IL16, IREB2, ISG20, GOLGA6L5P, KIF7, ZNF710, HDDC3, WASH3P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 GOLGA2P7, UBE2Q2P1, SPATA41, ANKRD34C, GDPGP1, OR4F6, OR4F15, OR4F13P, ADAMTS7P1, ST20, FAM174B, LINC01197, MIR184, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, NMB, NTRK3, FURIN, PCSK6, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, LINS1, FANCI, DNAJA4, MCTP2, SELENOS, MESP1, UNC45A, PSMA4, RGMA, WDR93, ADAMTSL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CEMIP, ALPK3, ABHD17C, RASGRF1, MESDC1, BCL2A1, RLBP1, BLM, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, CRTC3, EFTUD1P1, TTC23, MRPS11, SNRPA1, SCARNA15, MIR549A, NR2F2, HSP90B2P, AGBL1-AS1, ASB9P1, ANKRD34C-AS1, EFL1, LRRK1, TM2D3, WDR61, STARD5, AP3B2, ST8SIA2, FAM103A1, MEX3B, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ARRDC4, LINC00923, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 HOMER2, ZNF592, SV2B, ARNT2) 0.143531879360691 412 0.0495463551216137 0.716007757963059 15582 0.203115846054174 2 2 0 -6.83840914656025 LTS-017 NA NA NA NA LTS-017 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.791 1 NA NA NA NA NA LTS-017 chr16 81704 97354 15651 * POLR3K 0.366 1 NA 1.20114706125561 15 0.532830241884474 4 4 0 -5.76441049605283 LTS-017 chr16 97355 2201322 2103968 * c(LOC100134368, MIR1225, MIR3177, MIR3176, MIR3180-5, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, WDR90, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, NPW, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NA NA NA NA NA NA NA NA NA LTS-017 POLR3K, MSRB1, GNG13, PKD1, LUC7L, SNORA10, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, METRN, SNRNP25, TMEM204, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.374653599501794 264 0.0654876396602132 0.985327669327396 6915 0.312967506129801 3 2 1 -6.75328236757538 LTS-017 NA NA NA NA LTS-017 chr16 2201323 2201542 220 * RAB26 NA 0 NA 1.785 1 NA NA NA NA NA LTS-017 chr16 2201543 2297080 95538 * c(ECI1, DNASE1L2, E4F1, RAB26, SNORD60, BRICD5, PGP, CASKIN1, MLST8, TRAF7) 0.417677068709528 8 0.0411512888185604 1.58537357217849 531 0.311116757877648 5 3 2 -6.76291297505741 LTS-017 chr16 2297081 2301413 4333 * ECI1 NA 0 NA 1.111 1 NA NA NA NA NA LTS-017 chr16 2301414 2367336 65923 * c(MIR940, MIR3677, MIR4717, RNPS1, ECI1, ABCA3) 0.325831221824496 4 0.0528669714156832 1.00694995908901 208 0.253039684148544 4 3 1 -6.96019169396041 LTS-017 chr16 2367337 2512523 145187 * c(ABCA3, ABCA17P, C16orf59, CCNF) 0.469 1 NA 1.09316605159722 199 0.222022830017277 4 4 0 -5.77897442902007 LTS-017 chr16 2512524 2569936 57413 * c(NTN3, ATP6V0C, TBC1D24, C16orf59) NA 0 NA 0.976859291677025 145 0.175294050437469 3 NA NA -5.76523573025744 LTS-017 chr16 2569937 2570042 106 * c(ATP6V0C, TBC1D24) NA 0 NA 0.774 1 NA NA NA NA NA LTS-017 chr16 2570043 2653223 83181 * c(MIR3178, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CEMP1) 0.396575992003146 3 0.0829779087066752 0.746239476135586 252 0.177352174391695 2 1 1 -6.88696588777173 LTS-017 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.329 1 NA NA NA NA NA LTS-017 chr16 2672647 2747930 75284 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.428004503986696 2 0.0304055915910216 0.475252563852377 87 0.307235708003895 2 1 1 -6.87532231999802 LTS-017 chr16 2747931 3017679 269749 * c(SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, SRRM2, PRSS33, PRSS41, KCTD5, PRSS22, TCEB2, KREMEN2, PRSS27, FLYWCH1) 0.440748997465362 10 0.0449702370710031 0.785435423958889 696 0.562033591648287 2 1 1 -6.7407780585228 LTS-017 chr16 3017680 3062539 44860 * c(PAQR4, LINC00514, KREMEN2, CLDN9, PKMYT1) NA 0 NA 0.50632440501689 128 0.0827393316266907 1 NA NA -5.80414333817499 LTS-017 chr16 3062540 11016022 7953483 * c(LOC100128770, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, MGRN1, CARHSP1, TMEM186, ZNF500, OR1F2P, LINC00921, TMEM114, GRIN2A, C16orf72, UBN1, CDIP1, HMOX2, C16orf96, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, RBFOX1, NA NA NA NA NA NA NA NA NA LTS-017 ZSCAN32, PPL, HCFC1R1, ALG1, NMRAL1, SRL, MMP25, C16orf90, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, DNAJA3, TIGD7, IL32, SEC14L5) 0.431936284440445 140 0.085027302005479 0.73365630051845 5866 0.365427693056437 2 1 1 -6.79579659553717 LTS-017 NA NA NA NA LTS-017 chr16 11016023 15069171 4053149 * c(MIR365A, MIR4718, RMI2, ERCC4, PDXDC1, CLEC16A, NOMO1, RSL1D1, DEXI, ZC3H7A, GSPT1, BCAR4, CIITA, PARN, TXNDC11, BFAR, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, NPIPA3, TNP2, SHISA9, ABCC6P2, SNN, PLA2G10, SOCS1, SNX29, NPIPA1, LITAF) 0.433528166585834 57 0.0512906052847516 0.694351923699512 1794 0.160460119491358 2 1 1 -6.7571856412418 LTS-017 chr16 15069172 15082015 12844 * PDXDC1 NA 0 NA 0.983 1 NA NA NA NA NA LTS-017 chr16 15082016 15123936 41921 * PDXDC1 0.340545042295603 5 0.0789474508771499 0.966750450145246 100 0.153290883122529 3 2 1 -6.81262450542276 LTS-017 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.588 1 NA NA NA NA NA LTS-017 chr16 15125636 18542937 3417302 * c(NPIPA5, MIR3179-2, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, NOMO2, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, RRN3, NDE1, MIR484, XYLT1, C16orf45, KIAA0430) 0.454656307628755 43 0.0431892741288681 0.711222736496141 1476 0.185145923372695 2 1 1 -6.82280193025197 LTS-017 chr16 18542938 18549811 6874 * NOMO2 NA 0 NA 1.276 1 NA NA NA NA NA LTS-017 chr16 18549812 18792737 242926 * c(NOMO2, ABCC6P1) NA 0 NA 1.11448458017259 40 0.24367001514764 4 NA NA -5.77696135264575 LTS-017 chr16 18792738 21286927 2494190 * c(COQ7, ERI2, ACSM1, ACSM2A, DCUN1D3, IQCK, GPR139, CRYM, ITPRIPL2, PDILT, SMG1, ARL6IP1, ANKS4B, GP2, ACSM2B, KNOP1, GDE1, GPRC5B, SYT17, ACSM5, DNAH3, THUMPD1, C16orf62, TMEM159, LYRM1, RPS15A, ACSM3, CLEC19A, UMOD, ZP2, TMC5, TMC7, LOC81691, CCP110) 0.435004799703778 66 0.0708564917579358 0.730018291585142 3115 0.263023954467075 2 1 1 -6.76225843462924 LTS-017 chr16 21286928 21289626 2699 * CRYM 0.363 1 NA 0.722439938258422 13 0.132884565289983 2 2 0 -5.76446991265454 LTS-017 chr16 21289627 21397154 107528 * c(SNX29P1, CRYM, CRYM-AS1) 0.338049454349113 2 0.00848528137423854 0.663062173274483 39 0.11745462270197 6 4 2 -10.8706269554643 LTS-017 chr16 21397155 21397173 19 * SNX29P1 NA 0 NA 0.874 1 NA NA NA NA NA LTS-017 chr16 21397174 27078507 5681334 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, SLC5A11, EARS2, VWA3A, OTOA, C16orf82, GGA2, NPIPB3, PDZD9, TNRC6A, EEF2K, ZKSCAN2, AQP8, SLC7A5P2, NDUFAB1, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, POLR3E, PRKCB, UBFD1, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, PALB2, DCTN5, COG7, HS3ST4, HS3ST2) 0.361341312404955 64 0.0949297150193278 0.928946622176691 3715 0.240023460253589 3 2 1 -6.76893736429982 LTS-017 chr16 27078508 27713081 634574 * c(C16orf82, NSMCE1, KIAA0556, IL21R-AS1, GTF3C1, IL4R, FLJ21408, IL21R, KDM8) 0.44067134311158 10 0.0291397018210932 0.679689063283106 628 0.137563010435301 2 1 1 -6.76190432579026 LTS-017 chr16 27713082 27713103 22 * KIAA0556 0.46 1 NA 1.072 1 NA NA NA NA NA LTS-017 chr16 27713104 28515440 802337 * c(CLN3, GSG1L, XPO6, KIAA0556, IL27, SBK1, APOBR) 0.404551607870434 14 0.0493066208246201 0.975763892025518 593 0.232680750237642 3 2 1 -7.02890533907106 LTS-017 chr16 28515441 28518045 2605 * IL27 NA 0 NA 1.558 1 NA NA NA NA NA LTS-017 chr16 28518046 28608421 90376 * c(SGF29, IL27, NUPR1, SULT1A2) 0.437747044866934 5 0.0389255700022491 1.26581651946177 117 0.322950050839847 4 2 2 -6.73480836001306 LTS-017 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.362 1 NA NA NA NA NA LTS-017 chr16 28616944 28734890 117947 * SULT1A1 0.371347749062104 14 0.0837824236071893 0.77770585994252 101 0.370215384460302 3 2 1 -6.75410013252905 LTS-017 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.071 1 NA NA NA NA NA LTS-017 chr16 28834304 30795920 1961617 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4518, MIR4517, TMEM265, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, ZNF689, TMEM219, C16orf92, ZNF785, ZNF688, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, KCTD13, ASPHD1, SH2B1, TBC1D10B, SEZ6L2, LAT, C16orf54, INO80E, MYLPF, ITGAL, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, ATP2A1, ZNF771, PHKG2, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, NA NA NA NA NA NA NA NA NA LTS-017 LOC613038, FBRS, RRN3P2, ZG16, ZNF747, SPN, SNORA30, SULT1A3, TBX6, TUFM, LOC730183, PRR14, DCTPP1, GDPD3, PAGR1, ZNF768, RABEP2, SLC7A5P1, YPEL3, FAM57B, SPNS1, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, CD19, TAOK2, RNF40, MVP) 0.358080359986351 61 0.0697330232782082 0.976813441605006 4265 0.222644090191888 3 2 1 -6.76627611408752 LTS-017 NA NA NA NA LTS-017 chr16 30795921 30832405 36485 * ZNF629 NA 0 NA 0.59 1 NA NA NA NA NA LTS-017 chr16 30832406 31987905 1155500 * c(CLUHP3, MIR762, MIR4519, PYCARD-AS1, BCKDK, ZNF267, STX1B, ZNF720, COX6A2, PRSS36, CTF1, FUS, PYDC1, FBXL19-AS1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAM, ITGAX, YBX3P1, TRIM72, AHSP, FBXL19, PRSS8, C16orf58, SLC5A2, STX4, TGFB1I1, VKORC1, ZNF668, ARMC5, HSD3B7, KAT8, BCL7C, ORAI3, ZNF646, SETD1A) 0.450113038554245 31 0.0552778903476817 0.707672479173141 2384 0.145153558858735 2 1 1 -6.76068168373224 LTS-017 chr16 31987906 31993291 5386 * character(0) NA 0 NA 0.842 1 NA NA NA NA NA LTS-017 chr16 31993292 33961628 1968337 * c(SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.341219219079448 45 0.0879554122578852 0.964363061086704 252 0.4790061132287 3 2 1 -6.79520038686074 LTS-017 chr16 33961629 33965646 4018 * LINC00273 0.331241426048657 38 0.0977045980389441 0.723098421545346 62 0.328435464049604 6 4 2 -6.78059961200715 LTS-017 chr16 33965647 34682380 716734 * c(LINC01566, UBE2MP1) NA 0 NA 0.681243493454716 118 0.181651217202074 2 NA NA -5.77872252213874 LTS-017 chr16 46508169 46657971 149803 * c(ANKRD26P1, SHCBP1) 0.419 1 NA 0.705328477910271 205 0.175219123864282 2 2 0 -5.76441730684918 LTS-017 chr16 46657972 52498116 5840145 * c(LINC00919, LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, SIAH1, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.435479719267267 24 0.0966903019581262 0.691514405253689 2913 0.16541491450977 2 1 1 -6.77576200401525 LTS-017 chr16 52498117 53686907 1188791 * c(RPGRIP1L, TOX3, RBL2, CASC16, LOC643802, AKTIP, CHD9) 0.380940532620679 18 0.0913495226813892 0.902531313339524 601 0.20006923416189 3 2 1 -6.79033161395808 LTS-017 chr16 53686908 53690294 3387 * RPGRIP1L NA 0 NA 0.674 1 NA NA NA NA NA LTS-017 chr16 53690295 70016393 16326099 * c(CDH3, CDH5, MIR1538, MIR3935, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, IRX5, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, GNAO1, GOT2, NA NA NA NA NA NA NA NA NA LTS-017 TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, CRNDE, MT1IP, APOOP5, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.447337934461485 296 0.0562497375165658 0.719025867285714 12736 0.46234824114944 2 1 1 -6.76793454329207 LTS-017 NA NA NA NA LTS-017 chr16 70016394 70020272 3879 * c(PDXDC2P, CLEC18C) NA 0 NA 1.298 1 NA NA NA NA NA LTS-017 chr16 70020273 70048122 27850 * c(PDXDC2P, CLEC18C) 0.429 1 NA 1.19905477569581 9 0.303361354017138 4 4 0 -5.76441057775221 LTS-017 chr16 70048123 70180088 131966 * c(MIR1972-1, PDXDC2P, CLEC18C, PDPR) 0.282 1 NA 0.911214770002515 119 0.310481678702852 3 3 0 -5.76588809250695 LTS-017 chr16 70180089 70219815 39727 * c(CLEC18C, PDPR) NA 0 NA 0.958390710452796 40 0.186856449426579 3 NA NA -5.76445440081794 LTS-017 chr16 70219816 71167220 947405 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.405544477944512 92 0.0893430608001485 1.24951097652145 1786 0.3563030061518 4 2 2 -6.82122670950636 LTS-017 chr16 71167221 71218926 51706 * HYDIN 0.246 1 NA 1.17847700489121 31 0.477126526804626 4 4 0 -5.76444393255533 LTS-017 chr16 71218927 86614222 15395296 * c(LOC100129617, SYCE1L, MIR1910, SNORA70D, MIR3182, LINC01568, MIR4720, MIR4719, MIR5093, CDH13, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, COX4I1, SLC38A8, FLJ30679, LOC146513, CTRB1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LINC00311, LDHD, MLKL, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, NA NA NA NA NA NA NA NA NA LTS-017 OSGIN1, HP, HPR, HSBP1, HSD17B2, FAM92B, IRF8, ATXN1L, PKD1L3, KARS, LOC400548, FENDRR, C16orf74, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, GINS2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, HYDIN, TXNL4B, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, VAT1L, TLDC1, WFDC1, MTHFSD, TAT, SNORD71, LINC00917, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, KLHL36, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, ZNRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CNTNAP4, MBTPS1, TAF1C, USP10, MARVELD3, KCNG4, SDR42E1, BCAR1, KIAA0513, DHX38, IST1, ATP2C2) 0.28915061767662 268 0.0600572346130756 1.20751369923631 8311 0.294953663507605 4 3 1 -6.7449297913948 LTS-017 NA NA NA NA LTS-017 chr16 86614223 86614599 377 * FOXL1 0.341 1 NA 0.971882809010634 9 0.239125722395377 3 3 0 -5.76441204980369 LTS-017 chr16 86614600 87349530 734931 * c(C16orf95, FOXL1) NA 0 NA 1.16236855780888 41 0.163121288856019 4 NA NA -5.77880868304928 LTS-017 chr16 87349531 87350686 1156 * C16orf95 NA 0 NA 0.868 1 NA NA NA NA NA LTS-017 chr16 87350687 90161168 2810482 * c(VPS9D1-AS1, URAHP, LOC100287036, C16orf95, MIR4722, MIR5189, CDH15, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, SLC22A31, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, TCF25, ZCCHC14, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MC1R, MVD, CHMP1A, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, SPG7, GAS8-AS1, CA5A, DBNDD1, FBXO31, NA NA NA NA NA NA NA NA NA LTS-017 SLC7A5, CDT1, MAP1LC3B, SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, PIEZO1) 0.359604230466561 112 0.0784331601923614 0.977047974547615 4650 0.648181902072864 3 2 1 -6.74543977545056 LTS-017 NA NA NA NA LTS-017 chr16 90161169 90161242 74 * character(0) NA 0 NA 1.56155552782146 3 0.336017856668362 5 NA NA -5.76441252512205 LTS-017 chr17 6004 11843 5840 * DOC2B 0.214 1 NA 0.893664209296471 9 0.508065885928631 3 3 0 -5.76446209198306 LTS-017 chr17 11844 11701156 11689313 * c(LOC100128288, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, NA NA NA NA NA NA NA NA NA LTS-017 GGT6, SPNS2, WDR81, CLDN7, CRK, DNAH2, RTN4RL1, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPA1, RPL26, SCO1, SRR, NXN, SLC35G6, RNF222, PIRT, SHBG, SLC2A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2) 0.144768505036141 392 0.0605241984998588 0.736045337057346 18014 0.193030007487861 2 2 0 -7.08433686350207 LTS-017 NA NA NA NA LTS-017 chr17 11701157 11701165 9 * DNAH9 NA 0 NA 0.721 1 NA NA NA NA NA LTS-017 chr17 11701166 16220122 4518957 * c(MIR744, MIR1288, TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, ZSWIM7, COX10, ADORA2B, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TBC1D26, CDRT1, MEIS3P1, PMP22, TTC19, ZNF286A, ELAC2, MAP2K4, CDRT15P2, TEKT3, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, PIGL, NCOR1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.159834220768976 74 0.0934637511972227 0.677906397767074 2471 0.209306248907423 2 2 0 -6.82810435263643 LTS-017 chr17 16220123 16221055 933 * PIGL NA 0 NA 0.778 1 NA NA NA NA NA LTS-017 chr17 16221056 21117589 4896534 * c(FAM106CP, LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, RAI1, GRAP, AKAP10, LRRC75A-AS1, MIEF2, SLC5A10, SMCR5, SMCR8, NA, TOM1L2, SLC47A2, TRIM16L, USP32P1, DRG2, CENPV, FLCN, PLD6, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, MPRIP, USP22, TNFRSF13B, TBC1D28, CDRT15L2, DHRS7B, SNORD49A, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, LRRC75A, LLGL1, KRT16P2, GRAPL, MFAP4, TVP23B, NA NA NA NA NA NA NA NA NA LTS-017 MYO15A, TRPV2, RASD1, ALKBH5, MED9, SLC47A1, MAPK7, PRPSAP2, NT5M, ZNF287, ZNF624, FAM83G, KRT16P3, EVPLL, SHMT1, LGALS9C, SREBF1, SNORA59A, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, ZNF286B, UBB, RNF112, GID4, FAM106A, DRC3, COPS3, TMEM11, ATPAF2, SPECC1, PIGL, ULK2, CCDC144A) 0.164465559432944 139 0.0589840374328503 0.724674878289252 5854 0.206756905311303 2 2 0 -6.82456977793348 LTS-017 NA NA NA NA LTS-017 chr17 21117590 21194779 77190 * c(NATD1, MAP2K3, TMEM11) NA 0 NA 0.653770160001982 34 0.124101867909143 2 NA NA -5.78098403725855 LTS-017 chr17 21194780 21194785 6 * MAP2K3 0.47 1 NA 0.943 1 NA NA NA NA NA LTS-017 chr17 21194786 21218415 23630 * MAP2K3 0.408463968548853 47 0.050182396270676 0.877162978283451 145 0.258550369156195 5 3 2 -6.78539342780298 LTS-017 chr17 21218416 21318546 100131 * c(KCNJ12, MAP2K3) 0.307 1 NA 1.05725025551542 3 0.479266105624005 3 3 0 -5.7673599273891 LTS-017 chr17 21318547 21320422 1876 * KCNJ12 0.320288966724259 32 0.0650994276769847 1.00191928780885 83 0.549142919402647 13 9 4 -6.73872620875319 LTS-017 chr17 21320423 21431559 111137 * KCNJ12 NA 0 NA 0.78 1 NA NA NA NA NA LTS-017 chr17 21431560 22066835 635276 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.289372780072419 12 0.0743836797838196 0.742987265628256 202 0.313853059831128 4 3 1 -7.50759265984486 LTS-017 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-017 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.162 1 NA 0.711941634980597 17 0.194136720319652 2 2 0 -5.76442818950097 LTS-017 chr17 25630389 30213161 4582773 * c(MIR365B, MIR3184, SPAG5-AS1, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, LYRM9, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, EFCAB5, TMIGD1, LGALS9, MYO18A, MIR144, MIR193A, NA NA NA NA NA NA NA NA NA LTS-017 TBC1D3P5, SUZ12P1, NF1, NOS2, MIR423, OMG, DPRXP4, PIPOX, CRLF3, NLK, COPRS, FAM222B, ADAP2, UTP6, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, BLMH, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, TNFAIP1, VTN, TEFM, ATAD5, RAB34, NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.144313336364181 94 0.0594148090787405 0.726579972572121 6467 0.186083762302152 2 2 0 -6.81513092392071 LTS-017 NA NA NA NA LTS-017 chr17 30213162 30214161 1000 * UTP6 NA 0 NA 1.545 1 NA NA NA NA NA LTS-017 chr17 30214162 30303666 89505 * c(SUZ12, UTP6) 0.0902870566763414 2 0.0106066017177982 0.964975939122133 79 0.331459317948255 4 4 0 -6.77745703957083 LTS-017 chr17 30303667 30310014 6348 * SUZ12 NA 0 NA 0.59 1 NA NA NA NA NA LTS-017 chr17 30310015 34433730 4123716 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MYO1D, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, SH3GL1P1, SNORD7, NA NA NA NA NA NA NA NA NA LTS-017 MIR632, ZNF207, MMP28, TAF15, CDK5R1, ZNF830, SLFN11, RASL10B) 0.155342500157281 59 0.064850973342155 0.689452985498635 3645 0.206824614154905 2 2 0 -6.76294517503482 LTS-017 NA NA NA NA LTS-017 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.463 1 NA NA NA NA NA LTS-017 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.304759118740979 39 0.357409524427018 0 NA NA -5.82834234997233 LTS-017 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.778 1 NA NA NA NA NA LTS-017 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.151869158854412 20 0.0586879347413975 0.704632789926887 1545 0.189050035033314 2 2 0 -6.73363008940579 LTS-017 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.178 1 NA NA NA NA NA LTS-017 chr17 36351756 36398345 46590 * LOC440434 NA 0 NA 0.175001185580366 63 0.0542645470360544 0 NA NA -6.08352805416244 LTS-017 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.66 1 NA NA NA NA NA LTS-017 chr17 36421727 36962670 540944 * c(C17orf96, MIR4726, MIR4734, CISD3, SOCS7, MLLT6, LOC440434, GPR179, CWC25, PSMB3, ARHGAP23, PCGF2, SRCIN1, PIP4K2B, MRPL45) 0.120553768964367 10 0.0449795015040802 0.752930002317322 1100 0.161061192761369 2 2 0 -7.03558500073741 LTS-017 chr17 36962671 37054772 92102 * c(MIR4727, C17orf98, LASP1, CWC25, SNORA21, RPL23) 0.11 1 NA 0.714567524837131 155 0.199124804394576 2 2 0 -5.76470634783333 LTS-017 chr17 37054773 37219843 165071 * c(LOC100131347, LINC00672, LRRC37A11P, LASP1, FBXO47, PLXDC1) 0.144295171531507 3 0.00871779788708134 0.74077431099279 125 0.156712084471348 2 2 0 -6.99191648859237 LTS-017 chr17 37219844 41423944 4204101 * c(LOC100131347, KRTAP4-9, KRTAP4-7, RAMP2-AS1, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, STARD3, TMEM106A, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, KRT28, KRT24, ZNF385C, ERBB2, EZH1, CASC3, IKZF3, KCNH4, GAST, G6PC, NA NA NA NA NA NA NA NA NA LTS-017 KRT23, KAT2A, TUBG2, CCR10, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, MSL1, KRT27, STAC2, IFI35, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, KRT33B, KRT34, KRT35, ARL5C, KRT39, NBR1, NAGLU, ACLY, NEUROD2, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, KLHL11, GSDMB, PSMD3, PLXDC1, RAB5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 RARA, FKBP10, RPL19, RPL27, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, CACNB1, DHX58, PLEKHH3, COASY, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PPP1R1B, MIEN1, VPS25, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, PGAP3, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.104012217299689 189 0.042487804105322 0.982571093609221 9680 0.262659659648682 3 3 0 -6.78933705555558 LTS-017 NA NA NA NA LTS-017 chr17 41423945 41424033 89 * character(0) 0.187 1 NA 0.639414933477738 3 0.502475206685199 2 2 0 -5.76441208387848 LTS-017 chr17 41424034 41466096 42063 * LINC00910 0.36083975656895 9 0.125402795467689 0.748528670095599 39 0.326172590363527 3 2 1 -6.74937788917667 LTS-017 chr17 41466097 41566896 100800 * c(LINC00910, MIR2117, DHX8, ARL4D) NA 0 NA 0.924376131351325 33 0.277252735866492 3 NA NA -5.76503061356851 LTS-017 chr17 41566897 41567718 822 * DHX8 NA 0 NA 1.267 1 NA NA NA NA NA LTS-017 chr17 41567719 41891437 323719 * c(DHX8, DUSP3, ETV4, C17orf105, MEOX1, MPP3, SOST) 0.087 1 NA 1.24431989795414 343 0.2418912652947 4 4 0 -5.76935658013064 LTS-017 chr17 41891438 44363323 2471886 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, GPATCH8, FAM215A, FZD2, GFAP, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0888070219604731 45 0.0260728001774054 1.24530133199494 3712 0.40170623623515 4 4 0 -6.74753001224328 LTS-017 chr17 44363324 44782233 418910 * character(0) 0.078 1 NA 0.63655868937597 53 0.296338621132069 2 2 0 -5.79347837860649 LTS-017 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.206 1 NA NA NA NA NA LTS-017 chr17 44788332 45198343 410012 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.131526909105046 3 0.0639557138442949 1.02023021732111 265 0.224232724022575 3 3 0 -6.81767831276126 LTS-017 chr17 45198344 45214482 16139 * CDC27 0.486 1 NA 0.962468625782597 21 0.149172830412691 3 3 0 -5.76447594873751 LTS-017 chr17 45214483 45258971 44489 * CDC27 0.325641108214546 14 0.0909833942100317 0.933451882635195 85 0.331106062961662 4 3 1 -6.81932356723828 LTS-017 chr17 45258972 45266432 7461 * CDC27 0.077 1 NA 0.882187912832478 5 0.656437582714457 3 3 0 -5.76446824827583 LTS-017 chr17 45266433 47572957 2306525 * c(MIR1203, MIR3185, HOXB-AS1, CALCOCO2, HOXB13, IGF2BP1, CBX1, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, PRAC1, SKAP1, LRRC46, NA NA NA NA NA NA NA NA NA LTS-017 SCRN2, NPEPPS, TBKBP1, CDC27) 0.0942436123296489 28 0.0317950405436855 1.04625988059459 3151 0.478182015971173 4 4 0 -6.86211903772472 LTS-017 NA NA NA NA LTS-017 chr17 47572958 47579383 6426 * NGFR NA 0 NA 1.231 1 NA NA NA NA NA LTS-017 chr17 47579384 48771682 1192299 * c(SLC35B1, CHAD, KAT7, NXPH3, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, CACNA1G-AS1, TAC4, LOC284080, ITGA3, HILS1, NGFR, MRPL27, PDK2, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, ANKRD40) 0.0973405221388315 74 0.0621303880289144 1.12593946654341 2797 0.293631121036777 4 4 0 -6.77688393078501 LTS-017 chr17 48771683 61682087 12910405 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, TOB1, DCAF7, APPBP2, TLK2, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COX11, DYNLL2, EFCAB3, CYB561, ANKFN1, MARCH10, ACE, PPM1E, MMD, MTVR2, STXBP4, TANC2, OR4D1, C17orf47, GDPD1, HLF, METTL2A, C17orf67, NACA2, SKA2, RNF126P1, YPEL2, C17orf82, TOB1-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TBC1D3P2, TRIM37, NME1, NME2, UTP18, NA NA NA NA NA NA NA NA NA LTS-017 RNFT1, TUBD1, TACO1, MRPS23, PTRH2, LUC7L3, SEPT4, MBTD1, BCAS3, RNF43, MKS1, LINC00483, SMG8, TMEM100, MSX2P1, PRR11, TEX14, CA10, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SCARNA20, SUPT4H1, TBX2, CA4, MIR454, TRIM25, VEZF1, DHX40, KCNH6, COIL, AKAP1, VMP1, EPX, BRIP1, KIF2B, USP32, PPM1D, DGKE, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1, TBX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MRC2, MED13) 0.100491712408362 92 0.0341919136130422 1.0675235477812 6871 0.284829706581228 4 4 0 -7.85700882122359 LTS-017 NA NA NA NA LTS-017 chr17 61682088 61683686 1599 * TACO1 NA 0 NA 0.741 1 NA NA NA NA NA LTS-017 chr17 61683687 61829497 145811 * c(MAP3K3, TACO1, CCDC47, LOC729683, LIMD2, STRADA) 0.103917086666459 4 0.0137719521734091 0.852816561264144 193 0.203972373537856 3 3 0 -6.91828283050963 LTS-017 chr17 61829498 61829671 174 * CCDC47 NA 0 NA 1.056 1 NA NA NA NA NA LTS-017 chr17 61829672 70120059 8290388 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, NA NA NA NA NA NA NA NA NA LTS-017 CCDC47, PSMC5, PSMD12, SCN4A, SMURF2, SMARCD2, SOX9, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, PRR29, CD79B, HELZ) 0.108957533272028 81 0.0472621530520046 1.03008859858288 4404 0.265017311024176 3 3 0 -7.15837588163416 LTS-017 NA NA NA NA LTS-017 chr17 70120060 70120142 83 * SOX9 NA 0 NA 1.705 1 NA NA NA NA NA LTS-017 chr17 70120143 70732881 612739 * c(LINC00673, SLC39A11, LINC00511, SOX9) NA 0 NA 1.43980918754716 66 0.311577111648941 5 NA NA -5.76443717869866 LTS-017 chr17 70732882 74733288 4000407 * c(SMIM6, CD300LD, LOC100287042, MIR3678, MIR3615, RNF157-AS1, SNHG16, MIR4738, CDK3, ATP5H, ST6GALNAC2, CD300C, CD300A, CYGB, RNF157, METTL23, USH1G, CD300LB, KIF19, CD300LF, C17orf77, AANAT, SLC39A11, TRIM65, UNC13D, EVPL, FDXR, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GALK1, NAT9, LINC00469, FADS6, HID1, TSEN54, UBALD2, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, MRPL58, CD300E, OTOP3, NA NA NA NA NA NA NA NA NA LTS-017 GPR142, ZACN, ITGB4, BTBD17, LLGL2, LOC400620, MXRA7, ACOX1, MRPS7, HN1, SDK2, TMEM104, C17orf80, ST6GALNAC1, GPRC5C, PRPSAP1, MIF4GD, CASKIN2, SLC25A19, RPL38, UBE2O, SRSF2, CPSF4L, SMIM5, DNAI2, MRPL38, SUMO2, SRP68, SSTR2, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, ARMC7, RHBDF2, NUP85, MYO15B, QRICH2, FAM104A, MGC16275, FBF1, UNK, GALR2, SPHK1, TRIM47, SLC16A5, OTOP2, SLC9A3R1, COG1, RECQL5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TTYH2, TMEM94) 0.103590801579415 199 0.046627120553908 1.08170903853143 6781 0.310393761569314 4 4 0 -7.04312523677929 LTS-017 NA NA NA NA LTS-017 chr17 74733289 74857676 124388 * c(SRSF2, MFSD11) 0 1 NA 1.13343172447615 66 0.308930536998168 4 4 0 -5.76675085708023 LTS-017 chr17 74857677 74865194 7518 * MGAT5B NA 0 NA 0.979732476706117 3 0.249415316289918 3 NA NA -5.76447571910399 LTS-017 chr17 74865195 76230109 1364915 * c(TNRC6C-AS1, C17orf99, MIR4316, LOC100507351, SEPT9, TMC6, AFMID, MGAT5B, TMC8, TMEM235, BIRC5, FLJ45079, TNRC6C, SEC14L1, SNHG20, SCARNA16, TK1, SYNGR2) 0.0847767878662506 38 0.0215926993615516 1.28919370457834 1042 0.293666639498487 4 4 0 -6.80024093894725 LTS-017 chr17 76230110 76447782 217673 * c(LOC100996291, TMEM235, DNAH17, SOCS3, PGS1) 0.0646142079626416 8 0.0180826475621559 1.60926288777377 237 0.475715801631505 6 6 0 -6.74239011045185 LTS-017 chr17 76447783 76449327 1545 * DNAH17 NA 0 NA 1.16 1 NA NA NA NA NA LTS-017 chr17 76449328 80363378 3914051 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, DNAH17-AS1, ALYREF, BAIAP2, C1QTNF1, PPP1R27, SLC38A10, CANT1, TBC1D16, CSNK1D, TEPSIN, RBFOX3, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, NA NA NA NA NA NA NA NA NA LTS-017 TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, SGSH, ENGASE, TIMP2, ACTG1, MIR657, ASPSCR1, CARD14, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SLC16A3, HGS, CD7, MAFG-AS1, CYTH1, AATK, EIF4A3) 0.0761235833569677 142 0.0276450958317041 1.33576854396186 6093 0.577662066110088 5 5 0 -6.78190428674679 LTS-017 NA NA NA NA LTS-017 chr17 80363379 80386556 23178 * c(HEXDC, OGFOD3) 0.0597339238607153 2 0.0304055915910215 2.61825170314343 39 1.1354205419216 6 6 0 -6.74015912303356 LTS-017 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.112 1 NA NA NA NA NA LTS-017 chr17 80391535 80847694 456160 * c(RAB40B, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0802309122683503 17 0.02310700810424 1.30165679806951 674 0.303317030034424 5 5 0 -6.81982302372417 LTS-017 chr17 80847695 80851307 3613 * TBCD NA 0 NA 1.595 1 NA NA NA NA NA LTS-017 chr17 80851308 81050982 199675 * c(B3GNTL1, METRNL, TBCD) 0.0715994323269387 12 0.0138002525229421 1.51867840835976 206 0.396656878493809 5 5 0 -6.74302794908762 LTS-017 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.65968851319494 13 0.220636724283525 6 NA NA -5.76454313183396 LTS-017 chr18 116845 122301 5457 * ROCK1P1 0.117 1 NA 0.746902275389229 53 0.326380302096368 2 2 0 -5.76451651355746 LTS-017 chr18 122302 1359559 1237258 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, LINC00470, TYMS, YES1, COLEC12, USP14, THOC1) 0.1512989546083 13 0.0655252936091408 0.674517918408722 690 0.164321255563528 2 2 0 -6.78389860123259 LTS-017 chr18 2537498 2554774 17277 * METTL4 0.27596458050487 5 0.0845387485121468 0.430486813820608 57 0.109745504757764 1 1 0 -6.90287424540144 LTS-017 chr18 2554775 2908999 354225 * c(NDC80, SMCHD1, CBX3P2, METTL4, EMILIN2) 0.14924494970307 4 0.0433772213648285 0.702560261882777 373 0.181677841493905 2 2 0 -6.73325970792359 LTS-017 chr18 2909000 2909658 659 * EMILIN2 NA 0 NA 1.361 1 NA NA NA NA NA LTS-017 chr18 2909659 2925335 15677 * c(EMILIN2, LPIN2) 0.109632482267922 3 0.0190787840283389 0.941675452663185 131 0.241062672305069 3 3 0 -6.73677325418245 LTS-017 chr18 2925336 14843114 11917779 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, MYL12A, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, NA NA NA NA NA NA NA NA NA LTS-017 CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.154401233728595 128 0.0513494467985367 0.706913954768494 5293 0.250378074006842 2 2 0 -6.73904079637907 LTS-017 NA NA NA NA LTS-017 chr18 14843115 14848717 5603 * ANKRD30B NA 0 NA 1.998 1 NA NA NA NA NA LTS-017 chr18 14848718 15004191 155474 * ANKRD30B 0.320300200697253 5 0.0743592630409958 1.85353759941298 45 0.582303467517435 7 5 2 -6.74729625258958 LTS-017 chr18 15004192 15006193 2002 * character(0) NA 0 NA 2.19894758008269 27 0.860898741940447 8 NA NA -5.76441021941463 LTS-017 chr18 18529727 19244219 714493 * c(ESCO1, ABHD3, ROCK1, SNRPD1, GREB1L) NA 0 NA 2.07721691803852 505 0.408283787543458 8 NA NA -5.77075995729878 LTS-017 chr18 19244220 19263441 19222 * ABHD3 NA 0 NA 0.942 1 NA NA NA NA NA LTS-017 chr18 19263442 19446839 183398 * c(MIR320C1, ABHD3, MIR1-2, MIR133A1, MIB1) 0.396 1 NA 1.15670042771624 179 0.220362826449696 4 4 0 -5.76709045561094 LTS-017 chr18 19446840 22010422 2563583 * c(GATA6-AS1, MIR320C2, MIR4741, OSBPL1A, TTC39C, ANKRD29, CABYR, GATA6, C18orf8, LAMA3, NPC1, IMPACT, MIB1, RBBP8, CTAGE1, TMEM241, RIOK3, CABLES1) 0.437461934185719 31 0.125040715949491 1.18817164616518 1728 0.278397333931381 4 2 2 -6.73419548341737 LTS-017 chr18 22010423 22017817 7395 * IMPACT NA 0 NA 1.678 1 NA NA NA NA NA LTS-017 chr18 22017818 27879024 5861207 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, ZNF521, KCTD1, AQP4, IMPACT, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.403087461630663 13 0.0317348792986922 1.54089720678366 884 0.385118021727976 5 3 2 -6.85510490450942 LTS-017 chr18 28574092 28742854 168763 * c(DSC1, DSC2, DSC3) 0.216076178225807 2 0.0487903679018718 3.38519362715049 339 0.783337218063683 15 12 3 -6.73644350792398 LTS-017 chr18 28742855 28897936 155082 * character(0) NA 0 NA 1.848 1 NA NA NA NA NA LTS-017 chr18 28897937 30992076 2094140 * c(DSG2-AS1, SLC25A52, DSG4, DSG1, DSG2, DSG3, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, B4GALT6) 0.383247513123898 26 0.035312516848192 2.21236998551652 1515 0.586236349649786 8 5 3 -6.73563191574343 LTS-017 chr18 30992077 31158540 166464 * CCDC178 NA 0 NA 1.53 1 NA NA NA NA NA LTS-017 chr18 31158541 33048427 1889887 * c(ZSCAN30, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, ZNF24, ASXL3, ZNF397, NOL4) 0.409474776364069 23 0.0608192748207615 1.39512688595086 1049 0.382453645301019 5 3 2 -6.74208646557808 LTS-017 chr18 33048428 35145661 2097234 * c(MIR3975, INO80C, SLC39A6, GALNT1, TPGS2, MIR187, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, FHOD3, C18orf21) 0.411066899779755 28 0.0947314430181252 1.9409940758432 1056 0.950003075890543 7 4 3 -6.74550804898792 LTS-017 chr18 35145662 35237055 91394 * CELF4 NA 0 NA 1.482 1 NA NA NA NA NA LTS-017 chr18 35237056 40695611 5458556 * c(MIR4318, MIR5583-2, MIR5583-1, LINC00907, PIK3C3, RIT2, KC6, MIR924HG) 0.422 1 NA 1.41235504764346 297 0.413930190120511 5 5 0 -5.77358425693322 LTS-017 chr18 40695612 41559462 863851 * c(RIT2, SYT4) NA 0 NA 1.69892089723137 97 0.320041474707023 6 NA NA -5.76454598613755 LTS-017 chr18 42281045 42529996 248952 * SETBP1 0.118 1 NA 0.923929558607133 43 0.246832586141691 3 3 0 -5.76641022533462 LTS-017 chr18 42529997 66346843 23816847 * c(SNORD58C, LINC01630, MIR1539, MIR4319, MIR4320, CDH7, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4529, MIR3591, MIR4743, MIR4744, MIR5011, LINC-ROR, LINC01544, ACAA2, MALT1, POLI, HAUS1, ALPK2, LOXHD1, STARD6, C18orf25, CCBE1, C18orf54, TCEB3C, DCC, ZBTB7C, SKA1, CFAP53, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, SETBP1, SNORD58B, SNORD58A, CDH20, DYNAP, BOD1L2, SIGLEC15, HMSD, NA NA NA NA NA NA NA NA NA LTS-017 LOC284294, CDH19, GRP, ST8SIA5, RAX, CXXC1, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, SMAD2, SMAD4, SMAD7, MBD1, MC4R, ME2, MYO5B, NARS, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, DYM, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, EPG5, RAB27B, BCL2, RPL17, SERPINB3, SERPINB4, LOC643542, SKOR2, SLC14A1, SCARNA17, SNORA37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TCF4, CCDC68, SLC14A2, KATNAL2, MRO, HDHD2, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, DSEL, TXNL1, LIPG, ONECUT2, VPS4B, CTIF) 0.106272940992987 152 0.0386708720539959 0.960148173322826 9616 0.410572731356335 3 3 0 -6.75077855328984 LTS-017 NA NA NA NA LTS-017 chr18 66346844 66348120 1277 * TMX3 NA 0 NA 0.9 1 NA NA NA NA NA LTS-017 chr18 66348121 77917479 11569359 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.120482247874169 71 0.0392007832632296 0.895708960920036 3253 0.255194068366509 3 3 0 -7.12336675106214 LTS-017 chr18 77917480 78005362 87883 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.911828559674152 54 0.125235219637273 3 NA NA -5.77026488452191 LTS-017 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.464 1 NA 0.860751268656718 17 0.299386406819407 3 3 0 -5.77598385325468 LTS-017 chr19 282754 1277275 994522 * c(MED16, MIR3187, MIR4745, FSTL3, ABCA7, CIRBP, GRIN3B, MISP, CNN2, C2CD4C, CIRBP-AS1, CFD, ARID3A, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, FGF22, ODF3L2, GPX4, GZMM, PRSS57, PALM, THEG, ATP5D, POLR2E, POLRMT, MIER2, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, STK11, BSG, PLPPR3, MADCAM1, KISS1R, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, CDC34) 0.450168539230218 106 0.0421697506587358 0.739315254471288 2322 0.838698480729949 2 1 1 -6.78148742904573 LTS-017 chr19 1277276 1357082 79807 * c(EFNA2, C19orf24, MUM1) 0.38 1 NA 0.762724530532887 47 0.106016396895626 2 2 0 -5.79141699775264 LTS-017 chr19 1357083 1358726 1644 * MUM1 0.358 1 NA 0.758820453342223 12 0.102334678206541 2 2 0 -5.76493489387322 LTS-017 chr19 1358727 1358738 12 * MUM1 NA 0 NA 0.975 1 NA NA NA NA NA LTS-017 chr19 1358739 1646473 287735 * c(APC2, UQCR11, PLK5, C19orf25, GAMT, DAZAP1, ADAMTSL5, NDUFS7, MEX3D, MBD3, PCSK4, RPS15, TCF3, MUM1, REEP6) 0.366156206155595 32 0.0540095570993182 0.99780080739069 896 0.235914199267766 3 2 1 -6.74248439241984 LTS-017 chr19 1646474 2138750 492277 * c(LOC100288123, MIR1909, IZUMO4, SCAMP4, ADAT3, MOB3A, CSNK1G2, ATP8B3, CSNK1G2-AS1, MKNK2, ONECUT3, BTBD2, REXO1, TCF3, ABHD17A, KLF16, AP3D1) 0.450441485836585 32 0.0571995569433552 0.731355339364842 995 0.176807657088796 2 1 1 -6.77302016048988 LTS-017 chr19 2138751 2151143 12393 * AP3D1 NA 0 NA 1.059 1 NA NA NA NA NA LTS-017 chr19 2151144 3061267 910124 * c(MIR1227, MIR4321, ZNF554, ZNF57, JSRP1, DIRAS1, ZNF555, AES, TIMM13, AMH, GNG7, SLC39A3, TMPRSS9, C19orf35, GADD45B, OAZ1, LSM7, PLEKHJ1, SPPL2B, ZNF77, SGTA, LINGO3, THOP1, TLE2, TLE6, ZNF556, SF3A2, DOT1L, LMNB2, AP3D1) 0.353243983498431 45 0.055154905823178 0.995595120035565 1546 0.218855345723953 3 2 1 -6.80847123717665 LTS-017 chr19 3061268 3062119 852 * AES NA 0 NA 0.734 1 NA NA NA NA NA LTS-017 chr19 3062120 3110349 48230 * c(AES, GNA11) 0.4 1 NA 0.775152665231691 15 0.155447954848775 2 2 0 -5.77541760088832 LTS-017 chr19 3110350 3110361 12 * GNA11 0.45 1 NA 0.381 1 NA NA NA NA NA LTS-017 chr19 3110362 5215360 2104999 * c(C19orf71, DPP9-AS1, CHAF1A, MIR4747, MIR4746, EBI3, PLIN3, HMG20B, SEMA6B, MRPL54, LRG1, TMIGD2, TNFAIP8L1, MFSD12, GIPC3, TICAM1, DAPK3, ANKRD24, EEF2, KDM4B, ZFR2, PIP5K1C, SNORD37, TJP3, NMRK2, GNA11, GNA15, SMIM24, MIR7-3HG, UHRF1, CACTIN-AS1, MIR7-3, MATK, PLIN5, NFIC, ZBTB7A, FZR1, SIRT6, PIAS4, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, NCLN, SHD, PTPRS, CACTIN, CELF5, ARRDC5, SH3GL1, TBXA2R, NA NA NA NA NA NA NA NA NA LTS-017 MIR637, PLIN4, FSD1, UBXN6, DOHH, CREB3L3, HDGFRP2, RAX2, MPND, ATCAY, S1PR4, DPP9, APBA3) 0.456005769959943 82 0.0360302325461844 0.743967892701654 3389 0.220707917085181 2 1 1 -6.95028464699595 LTS-017 NA NA NA NA LTS-017 chr19 5215361 5215472 112 * PTPRS 0.464 1 NA 0.890462256839939 3 0.23067798623478 3 3 0 -5.76441549809635 LTS-017 chr19 5215473 5218836 3364 * PTPRS 0.371 1 NA 0.899480518698347 15 0.1194733682219 3 3 0 -5.76484374368163 LTS-017 chr19 5218837 6686289 1467453 * c(LOC100128568, MIR3940, TUBB4A, ACER1, C19orf70, NDUFA11, ZNRF4, PRR22, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, SLC25A41, GTF2F1, HSD11B1L, VMAC, MLLT1, NRTN, PSPN, DUS3L, PTPRS, RFX2, SAFB, C3, SLC25A23, DENND1C, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, TNFSF14, TNFSF9, CRB3, LONP1, SAFB2, CD70) 0.352682304124758 55 0.0741952923987864 0.989272529395473 1991 0.4932662247788 3 2 1 -6.76918464965632 LTS-017 chr19 6686290 6686979 690 * C3 NA 0 NA 1.43733915927866 7 0.395268022389631 5 NA NA -5.7644101856294 LTS-017 chr19 6686980 6689183 2204 * C3 NA 0 NA 0.622 1 NA NA NA NA NA LTS-017 chr19 6689184 6690571 1388 * C3 0.493 1 NA 0.655130080283165 5 0.151670695917174 2 2 0 -5.76459904764581 LTS-017 chr19 6690572 8651562 1960991 * c(LOC100128573, PET100, SH2D3A, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, KANK3, MBD3L5, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, GPR108, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, NA NA NA NA NA NA NA NA NA LTS-017 ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B, PEX11G, TRIP10) 0.443168671077015 124 0.0751508719419297 0.740769380015398 3491 0.186962327436102 2 1 1 -6.82039327177058 LTS-017 NA NA NA NA LTS-017 chr19 8651563 8841558 189996 * c(ACTL9, OR2Z1, ADAMTS10) 0.439 1 NA 0.711770198745585 115 0.178031644698664 2 2 0 -5.76481856190806 LTS-017 chr19 8841559 9056297 214739 * c(ZNF558, OR2Z1, MBD3L1, MUC16) 0.382789091381232 19 0.146734175053581 0.748626195263904 537 0.248284680101393 2 1 1 -6.82576666209948 LTS-017 chr19 9056298 9237542 181245 * c(OR7G1, OR1M1, OR7G2, OR7G3, MUC16) 0.353732249995155 59 0.0820911170002974 1.07412721327331 796 0.669120987368162 3 2 1 -6.75852283922681 LTS-017 chr19 9237543 9237662 120 * OR7G3 NA 0 NA 1.06494668091926 3 0.0779422863405995 3 NA NA -5.76456147570749 LTS-017 chr19 9237663 9251087 13425 * ZNF317 NA 0 NA 0.713 1 NA NA NA NA NA LTS-017 chr19 9251088 9267319 16232 * ZNF317 0.473 1 NA 0.788908373230973 13 0.102883055344032 2 2 0 -5.77624979987467 LTS-017 chr19 9267320 9490292 222973 * c(ZNF559-ZNF177, OR7D4, OR7D2, OR7E24, ZNF699, ZNF317, ZNF177, ZNF559) 0.452270245255647 5 0.027700180504827 0.738030678449946 254 0.205441847481891 2 1 1 -6.88699555827574 LTS-017 chr19 9490293 9490730 438 * c(ZNF559-ZNF177, ZNF177) NA 0 NA 0.823 1 NA NA NA NA NA LTS-017 chr19 9490731 9771475 280745 * c(ZNF559-ZNF177, ZNF266, ZNF560, ZNF561-AS1, ZNF562, ZNF121, ZNF177, ZNF426, ZNF561) 0.368654464595117 2 0.0544472221513641 0.928276607688092 359 0.154611860348087 3 2 1 -6.73716669336997 LTS-017 chr19 9771476 9800663 29188 * c(ZNF562, ZNF812P) NA 0 NA 0.715 1 NA NA NA NA NA LTS-017 chr19 9800664 12075954 2275291 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, ZNF846, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF763, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, ZNF833P, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, PIN1, S1PR5, ACP5, FBXL12, NA NA NA NA NA NA NA NA NA LTS-017 C19orf66, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF69, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, ZNF700, ZNF439, S1PR2, OLFM2, RAB3D, KEAP1) 0.445343611453702 93 0.0905808486136963 0.733320047089798 4603 0.216575455707562 2 1 1 -6.78389044389335 LTS-017 NA NA NA NA LTS-017 chr19 12075955 12075964 10 * ZNF763 NA 0 NA 0.462 1 NA NA NA NA NA LTS-017 chr19 12075965 12090190 14226 * ZNF763 NA 0 NA 0.447313455850396 39 0.0482628738602703 1 NA NA -5.76635728882059 LTS-017 chr19 12090191 12125497 35307 * ZNF763 NA 0 NA 2.608 1 NA NA NA NA NA LTS-017 chr19 12125498 12759271 633774 * c(ZNF625-ZNF20, ZNF443, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF844, ZNF788, MAN2B1, ZNF44, ZNF490, ZNF878, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.471337143034144 17 0.031061371887433 0.685637896120718 1227 0.210962233200437 2 1 1 -7.34803248484957 LTS-017 chr19 12759272 12760002 731 * MAN2B1 NA 0 NA 1.131 1 NA NA NA NA NA LTS-017 chr19 12760003 14236949 1476947 * c(RNASEH2A, KLF1, NACC1, MISP3, RLN3, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, NANOS3, PALM3, JUNB, LYL1, MIR181C, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, PRDX2, CACNA1A, C19orf43, C19orf57, PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, NA NA NA NA NA NA NA NA NA LTS-017 IER2) 0.452896782547608 47 0.042940657802448 0.750021669785746 2717 0.158194053394636 2 1 1 -6.93811250562694 LTS-017 NA NA NA NA LTS-017 chr19 14236950 14302096 65147 * c(LOC100507373, ADGRL1, ASF1B) 0.272 1 NA 0.493490364955983 161 0.107958934063371 1 1 0 -5.78330955061759 LTS-017 chr19 14302097 14736316 434220 * c(DDX39A, GIPC1, ADGRL1, DNAJB1, CLEC17A, NDUFB7, PKN1, PTGER1, MIR639, ADGRE3, TECR, ADGRE5) 0.464811654767821 14 0.0332351759898593 0.73482456116516 517 0.209270261864203 2 1 1 -7.1008735936595 LTS-017 chr19 14736317 14769383 33067 * ADGRE3 0 1 NA 0.750164374843612 59 0.372432996966824 2 2 0 -5.76498127935762 LTS-017 chr19 14769384 14863391 94008 * c(ADGRE2, ZNF333, ADGRE3) 0.462701743034006 3 0.0213853532431272 0.738802301980281 158 0.188088798159021 2 1 1 -7.42643824626678 LTS-017 chr19 14863392 14865809 2418 * ADGRE2 NA 0 NA 1.054 1 NA NA NA NA NA LTS-017 chr19 14865810 15770165 904356 * c(MIR1470, AKAP8, ILVBL, CYP4F8, PGLYRP2, OR1I1, CCDC105, CYP4F22, BRD4, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, AKAP8L, ADGRE2, OR7A10, CYP4F3, NOTCH3, WIZ, RASAL3, SLC1A6, EPHX3, SYDE1) 0.382708379130787 39 0.0529914565466602 1.00526875097568 1447 0.264048347224912 3 2 1 -6.79457570641824 LTS-017 chr19 15770166 16060835 290670 * c(OR10H4, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.429514425974295 26 0.0993336568571569 0.765516239054031 313 0.310105849364814 2 1 1 -6.75041893070047 LTS-017 chr19 16060836 16130522 69687 * LINC00661 NA 0 NA 0.837 1 NA NA NA NA NA LTS-017 chr19 16130523 16911022 780500 * c(KLF2, CHERP, CIB3, CALR3, LINC00661, LINC00905, FAM32A, NWD1, RAB8A, EPS15L1, TPM4, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, MED26) 0.373166097075375 31 0.0424836717527028 0.941841234633307 1044 0.221110877408856 3 2 1 -6.73849183228196 LTS-017 chr19 16911023 16918356 7334 * NWD1 NA 0 NA 0.555 1 NA NA NA NA NA LTS-017 chr19 16918357 17439123 520767 * c(ANKLE1, NR2F6, SIN3B, CPAMD8, NWD1, BABAM1, MYO9B, USE1, ANO8, MRPL34, DDA1, ABHD8, OCEL1, USHBP1, F2RL3, HAUS8) 0.436331315950736 38 0.084655829867666 0.739266924374025 1127 0.207612126269923 2 1 1 -6.75043033996699 LTS-017 chr19 17439124 17439129 6 * ANO8 NA 0 NA 1.068 1 NA NA NA NA NA LTS-017 chr19 17439130 18332173 893044 * c(TMEM221, B3GNT3, IFI30, CCDC124, NXNL1, FAM129C, UNC13A, MAST3, FCHO1, PGLS, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, SLC27A1, KCNN1, PDE4C, PIK3R2, MAP1S, ANO8, RAB3A, RPL18A, SLC5A5, BST2, COLGALT1, PLVAP, GTPBP3, MPV17L2, MVB12A) 0.387459701119012 55 0.0927085146406126 0.99296227702818 2052 0.256605859879786 3 2 1 -6.7709738037881 LTS-017 chr19 18332174 18332878 705 * PDE4C NA 0 NA 0.713 1 NA NA NA NA NA LTS-017 chr19 18332879 18542293 209415 * c(MIR3188, MIR3189, LRRC25, SSBP4, LSM4, JUND, PDE4C, PGPEP1, LOC729966, KIAA1683, GDF15) 0.387498702852832 6 0.110484388037406 0.864312746785604 289 0.190684508157553 3 2 1 -6.78022437366798 LTS-017 chr19 18542294 18542472 179 * SSBP4 NA 0 NA 0.732 1 NA NA NA NA NA LTS-017 chr19 18542473 19168983 626511 * c(SUGP2, CERS1, COPE, COMP, SSBP4, CRTC1, FKBP8, TMEM59L, GDF1, ISYNA1, DDX49, C19orf60, KLHL26, UPF1, UBA52, KXD1, ELL, CRLF1, ARMC6, HOMER3) 0.452032465281033 19 0.0415777296438752 0.744890921322546 1112 0.161945290397791 2 1 1 -6.84178327555074 LTS-017 chr19 19168984 19206692 37709 * c(SLC25A42, ARMC6) NA 0 NA 0.95 1 NA NA NA NA NA LTS-017 chr19 19206693 19656615 449923 * c(MEF2B, NR2C2AP, NCAN, CILP2, MAU2, SLC25A42, YJEFN3, HAPLN4, BORCS8-MEF2B, NDUFA13, TM6SF2, GATAD2A, TMEM161A, SUGP1, BORCS8, TSSK6, RFXANK) 0.368158971445834 30 0.0514030277743229 0.994554029928507 1093 0.258743884425242 3 2 1 -6.74158734741527 LTS-017 chr19 19656616 19752671 96056 * c(CILP2, GMIP, PBX4, LPAR2) 0 1 NA 0.998841066623943 173 0.255243115987826 3 3 0 -5.76656754151035 LTS-017 chr19 19752672 20188990 436319 * c(LINC00663, ZNF506, GMIP, ZNF253, ATP13A1, ZNF14, ZNF90, ZNF93, ZNF682, ZNF101) 0.370254608345659 7 0.0611411325969523 0.931548757701255 394 0.1775928371139 3 2 1 -6.73657424686364 LTS-017 chr19 20188991 20215154 26164 * ZNF90 NA 0 NA 0.738 1 NA NA NA NA NA LTS-017 chr19 20215155 20242814 27660 * ZNF90 NA 0 NA 0.589838792907263 42 0.125267314636117 2 NA NA -5.79745366932543 LTS-017 chr19 20242815 24309080 4066266 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF708, ZNF43, ZNF85, ZNF91, ZNF99, ZNF208, ZNF430, ZNF486, ZNF254) 0.29212663509435 50 0.0886725229511973 1.11536814319951 1252 0.400285061636114 4 3 1 -6.8086707679293 LTS-017 chr19 24309081 24345121 36041 * c(HAVCR1P1, ZNF254) NA 0 NA 1.10235995045959 21 0.19350759798052 4 NA NA -5.76833978433081 LTS-017 chr19 28247625 30017670 1770046 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.429 1 NA 1.47994076752432 29 0.225362739892866 5 5 0 -5.77726342226596 LTS-017 chr19 30017671 33457243 3439573 * c(THEG5, POP4, SLC7A9, DPY19L3, ZNF507, VSTM2B, RGS9BP, NUDT19, LOC400684, TSHZ3, PLEKHF1, C19orf12, ANKRD27, CEP89, URI1, CCNE1, PDCD5, TDRD12, NA, ZNF536) 0.411960301241992 24 0.0936394178736185 1.42526607498244 1196 0.458201865655347 5 3 2 -6.73512609863069 LTS-017 chr19 33457244 35036298 1579055 * c(UBA2, CEBPA, CEBPG, WDR88, WTIP, LSM14A, GPI, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, PDCD2L, CEP89, RHPN2, FAAP24, KIAA0355) 0.33519139316624 37 0.0539058934194152 1.69855784949354 1114 0.402464753526462 6 4 2 -6.80300994432806 LTS-017 chr19 35036299 35084412 48114 * c(SCGB2B2, SCGB1B2P) NA 0 NA 1.375 1 NA NA NA NA NA LTS-017 chr19 35084413 35175775 91363 * c(SCGB2B3P, SCGB2B2, ZNF302) 0.380551549884946 2 0.0254558441227157 1.54015382728471 48 0.34924549881096 8 5 3 -6.80771648564671 LTS-017 chr19 35175776 35422808 247033 * c(LINC00904, ZNF599, ZNF181, LOC400685, ZNF302, ZNF30) 0.212 1 NA 1.5530861990236 153 0.316479249574244 5 5 0 -5.77229901855015 LTS-017 chr19 35422809 36038390 615582 * c(HPN-AS1, LINC01531, TMEM147-AS1, MIR5196, TMEM147, ZNF792, FAM187B, LGI4, GAPDHS, FFAR1, FFAR3, FFAR2, HPN, SBSN, KRTDAP, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, ZNF30, DMKN, CD22) 0.245034017625674 53 0.049157576669083 1.44645943331619 1339 0.393860008858175 5 4 1 -6.73334518070044 LTS-017 chr19 36038391 36164446 126056 * c(UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, ATP4A, RBM42) NA 0 NA 1.47029536329884 321 0.284600146965261 5 NA NA -5.76472215954847 LTS-017 chr19 36164447 36166729 2283 * UPK1A NA 0 NA 1.973 1 NA NA NA NA NA LTS-017 chr19 36166730 36169285 2556 * UPK1A 0.373 1 NA 1.96331318966087 19 0.777120073210784 7 7 0 -5.76441061035378 LTS-017 chr19 36169286 40947448 4778163 * c(LOC100129935, LOC100134317, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, IFNL4, PAK4, SPINT2, DLL3, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, C19orf47, COX7A1, HIPK4, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, TTC9B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, ZNF780B, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, AKT2, FBL, ZFP30, NA NA NA NA NA NA NA NA NA LTS-017 SIRT2, SIPA1L3, PLD3, ZNF345, CLIP3, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, ZNF780A, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, LGALS13, SERTAD3, SERTAD1, HNRNPL, APLP1, ZNF260, ZNF546, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, ZNF829, ZNF568, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, MAP3K10, NFKBIB, NPHS1, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMC4, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LRFN1, ZFP14, ZNF529, PRX, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, MIR641, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, LRFN3, IGFLR1, CNTD2, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, TIMM50, KCNK6, PPP1R14A, GMFG, KMT2B) 0.352357620978944 204 0.0680443522936979 1.6898607095203 8708 0.43591048383875 6 4 2 -6.73326008038001 LTS-017 NA NA NA NA LTS-017 chr19 40947449 40947481 33 * SERTAD3 NA 0 NA 2.286 1 NA NA NA NA NA LTS-017 chr19 40947482 41078220 130739 * c(SERTAD3, SPTBN4, BLVRB) 0.388272312038572 7 0.0611633254569467 1.96701449390858 277 0.362213908632977 8 5 3 -6.7409701658369 LTS-017 chr19 41078221 41173537 95317 * c(SPTBN4, LTBP4, NUMBL, SHKBP1) NA 0 NA 2.0952827535148 289 0.398955175911508 8 NA NA -5.76501574560649 LTS-017 chr19 41173538 41173541 4 * NUMBL NA 0 NA 0.967 1 NA NA NA NA NA LTS-017 chr19 41173542 41206207 32666 * c(COQ8B, NUMBL) 0 1 NA 1.0096473224904 81 0.270816692366253 3 3 0 -5.76537692633041 LTS-017 chr19 41206208 41869541 663334 * c(MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, C19orf54, CYP2S1, RAB4B, AXL, TMEM91, SNRPA, TGFB1, COQ8B, ITPKC, B9D2, MIA, CCDC97) 0.132041650060374 16 0.0392799779361785 0.979424852354981 1018 0.270236010912187 3 3 0 -6.90315439396317 LTS-017 chr19 41869542 41884117 14576 * c(BCKDHA, TMEM91, B9D2) NA 0 NA 0.693 1 NA NA NA NA NA LTS-017 chr19 41884118 43370768 1486651 * c(ERICH4, LOC100289650, MIR4323, PCAT19, LOC100505622, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM8, CEACAM4, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, B3GNT8, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, POU2F2, ATP5SL, PSG1, PSG3, EXOSC5, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, ZNF574, PSG10P, CNFN, CEACAM21, ARHGEF1, CD79A) 0.144208771082954 39 0.0523619964999702 0.736677791679298 2316 0.217046137346867 2 2 0 -6.7786103351504 LTS-017 chr19 43370769 43371496 728 * c(PSG1, PSG3) NA 0 NA 1.199 1 NA NA NA NA NA LTS-017 chr19 43371497 44565104 1193608 * c(SRRM5, LOC100505715, IRGQ, ZNF428, CADM4, ETHE1, PRG1, LYPD3, LOC284344, ZNF575, LYPD5, ZNF283, ZNF404, ZNF284, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, PHLDB3, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF230, ZNF576, TEX101) 0.132297230515326 49 0.0722547517445037 0.953821556707243 1302 0.317295510141134 3 3 0 -6.78412840384138 LTS-017 chr19 44565105 44570195 5091 * c(ZNF284, ZNF223) NA 0 NA 0.523 1 NA NA NA NA NA LTS-017 chr19 44570196 45157264 587069 * c(LOC100379224, MIR4531, ZNF234, CEACAM20, IGSF23, ZNF285, ZNF284, ZNF233, CEACAM22P, PVR, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF235) 0.154825663566502 26 0.0297448896709748 0.735452204363695 861 0.196409127000807 2 2 0 -6.76575916465251 LTS-017 chr19 45157265 45161008 3744 * PVR NA 0 NA 1.059 1 NA NA NA NA NA LTS-017 chr19 45161009 45203952 42944 * c(CEACAM16, CEACAM19, PVR) 0.110214361746208 2 0.00919238815542513 0.989518429365839 140 0.250735989096421 3 3 0 -6.73972412941933 LTS-017 chr19 45203953 45411921 207969 * c(TOMM40, CBLC, APOE, CEACAM16, BCAM, NECTIN2, BCL3) 0.0888325778269404 12 0.0394722764235939 1.2723692411524 352 0.332802056208514 4 4 0 -6.73733176290316 LTS-017 chr19 45411922 48845905 3433984 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, RNU6-66P, PPP1R13L, CD3EAP, CLASRP, KPTN, CKM, AP2S1, CLPTM1, CRX, PPM1N, KLC3, DACT3, SIX5, IGFL2, ZNF296, ZNF114, DMPK, DMWD, EMP3, ERCC1, ERCC2, CARD8, ZC3H4, FBXO46, FOSB, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, NA NA NA NA NA NA NA NA NA LTS-017 GPR4, PPP1R37, NKPD1, TPRX1, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IGFL1, BLOC1S3, BHMG1, IGFL3, LIG1, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, TMEM143, PPP5C, CABP5, MEIS3, PTGIR, PNMAL2, MARK4, RELB, RTN2, ELSPBP1, SELENOW, HIF3A, SLC1A5, SLC8A2, SNRPD2, SULT2A1, SNORD23, MIR642A, C5AR1, CCDC61, VASP, MIR769, TRAPPC6A, FKRP, GEMIN7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 OPA3, CALM3, RSPH6A, SYMPK, CCDC8, ZNF541, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CCDC114, LOC93429, GNG8, DHX34) 0.103119633775626 104 0.0459507470433959 0.984872332724288 5550 0.263768828687789 3 3 0 -6.78793539324051 LTS-017 NA NA NA NA LTS-017 chr19 48845906 50763886 1917981 * c(SNAR-G1, SNAR-B2, SNAR-D, SNAR-G2, MIR4324, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, IZUMO2, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, SPACA4, ADM5, FCGRT, ATF5, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, ZNF473, IL4I1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, NA NA NA NA NA NA NA NA NA LTS-017 SLC6A16, GRIN2D, GYS1, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, SIGLEC16, LOC400710, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, VRK3, PTOV1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, SULT2B1, TULP2, CA11, TBC1D17, MYH14, FUZ, MED25, BCL2L12, GRWD1, AKT1S1, SNORD35B, TEAD2, PPFIA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 CYTH2, CGB5, CGB7, CGB8, CD37) 0.146484876775868 62 0.0476682330720304 0.748589001586907 4771 0.348317758540727 2 2 0 -6.77152987234654 LTS-017 NA NA NA NA LTS-017 chr19 50763887 50763889 3 * MYH14 0.105 1 NA 5.733 1 NA NA NA NA NA LTS-017 chr19 50763890 50813157 49268 * MYH14 0.117 1 NA 1.20030005267849 127 0.435694701041837 4 4 0 -5.76441118746849 LTS-017 chr19 50813158 50813169 12 * MYH14 0.129 1 NA 0.523 1 NA NA NA NA NA LTS-017 chr19 50813170 51825479 1012310 * c(SNAR-F, KLK11, KLK8, FAM71E1, JOSD2, NAPSB, KLK5, KLK13, SIGLEC7, SIGLEC9, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, IGLON5, KLK14, KLK12, MYBPC2, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, MYH14, SYT3, C19orf48, CTU1, ACPT, LRRC4B, CD33, NAPSA, KLK4) 0.109217774354582 51 0.0774601073798256 0.991404976044353 1794 0.389568303887138 3 3 0 -6.74042282421055 LTS-017 chr19 51825480 51826858 1379 * IGLON5 NA 0 NA 1.23 1 NA NA NA NA NA LTS-017 chr19 51826859 51857934 31076 * c(VSIG10L, ETFB, IGLON5) 0.046 1 NA 1.25447362877002 161 0.370464541454584 4 4 0 -5.76470696759593 LTS-017 chr19 51857935 52133720 275786 * c(LOC100129083, CLDND2, C19orf84, ETFB, SIGLEC8, LIM2, NKG7, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, SIGLEC6) 0.100906630395853 13 0.0306744694644109 0.95827288327289 591 0.242918917870988 3 3 0 -6.79921339085688 LTS-017 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.746 1 NA NA NA NA NA LTS-017 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.120605570742771 2 0.00989949493661164 1.6234544411744 39 0.667549625139803 11 10 1 -6.75641808750442 LTS-017 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 1.003 1 NA NA NA NA NA LTS-017 chr19 52196825 52394655 197831 * c(SPACA6, FPR1, FPR2, FPR3, HAS1, ZNF649, ZNF577) 0.107886552834056 26 0.025616491082594 0.990856383190505 245 0.326676118067663 3 3 0 -6.7445773078665 LTS-017 chr19 52394656 52394746 91 * ZNF649 NA 0 NA 1.324 1 NA NA NA NA NA LTS-017 chr19 52394747 53351266 956520 * c(ZNF480, ZNF534, ZNF578, ZNF836, ZNF610, ZNF600, ZNF615, ZNF841, ZNF808, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF613, ZNF614, ZNF611, ZNF528, ZNF616, ZNF766, ZNF468, ZNF432) 0.0819619989079462 37 0.0231535869486477 1.1861800678082 1287 1.22331832516098 4 4 0 -6.77716179464008 LTS-017 chr19 53351267 53351345 79 * ZNF468 NA 0 NA 0.908 1 NA NA NA NA NA LTS-017 chr19 53351346 53579136 227791 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, ERVV-1, ZNF320, ZNF321P, ZNF702P, ZNF468, ZNF160) 0.104369446352344 9 0.016271140095273 0.897421316641352 256 0.311613636087168 3 3 0 -6.83974845413388 LTS-017 chr19 53579137 53589562 10426 * ZNF160 NA 0 NA 0.694 1 NA NA NA NA NA LTS-017 chr19 53589563 54590467 1000905 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, ZNF813, TPM3P9, ZNF525, LOC284379, VSTM1, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, TARM1, MIR372, MIR373, DPRX, ZNF331, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, NA NA NA NA NA NA NA NA NA LTS-017 MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, NLRP12, MYADM, ZNF845) 0.146541144519798 49 0.0459807708995511 0.715443453643571 1646 0.331387216791852 2 2 0 -6.73783727366502 LTS-017 NA NA NA NA LTS-017 chr19 54590468 54597931 7464 * character(0) NA 0 NA 0.999 1 NA NA NA NA NA LTS-017 chr19 54597932 54711329 113398 * c(OSCAR, TMC4, PRPF31, TFPT, NDUFA3, CNOT3, RPS9, TSEN34, MBOAT7, LENG1) 0.105777450183607 14 0.0341486730068954 1.00754249648805 600 0.216878786446654 3 3 0 -6.75264612153608 LTS-017 chr19 54711330 54724006 12677 * c(LILRB3, RPS9, LILRA6) 0.396 1 NA 0.85106055098682 42 0.287170602088432 3 3 0 -5.76554050737052 LTS-017 chr19 54724007 54744209 20203 * c(LILRB3, LILRA6) 0.354522170694501 6 0.171493440107778 1.38370317330241 60 0.790746321825291 6 4 2 -6.73381954702519 LTS-017 chr19 54744210 54744256 47 * c(LILRB3, LILRA6) NA 0 NA 0.697 1 NA NA NA NA NA LTS-017 chr19 54744257 54746051 1795 * c(LILRB3, LILRA6) 0.418288392769609 3 0.0227449628123093 0.528951490174547 20 0.260243908872548 12 7 5 -6.79475089568529 LTS-017 chr19 54746052 54746081 30 * c(LILRB3, LILRA6) 0.144 1 NA 0.644321849581382 2 0.295570634535977 2 2 0 -5.76441170874479 LTS-017 chr19 54746082 54746753 672 * c(LILRB3, LILRA6) 0.187 1 NA 0.49067090834609 18 0.267259952766854 1 1 0 -5.76443732724473 LTS-017 chr19 54746754 54754227 7474 * LILRA6 NA 0 NA 0.789 1 NA NA NA NA NA LTS-017 chr19 54754228 54800203 45976 * c(MIR4752, LILRB2, LILRB5, LILRA3, LILRA6) 0.0857502812933158 5 0.0561889668885271 0.967362191471546 165 0.366303394459174 4 4 0 -6.74355476331692 LTS-017 chr19 54800204 54818321 18118 * c(LILRA3, LILRA6) NA 0 NA 0.141720093518414 39 0.186757418415798 0 NA NA -5.81368745629241 LTS-017 chr19 54818322 54818411 90 * LILRA5 NA 0 NA 0.977 1 NA NA NA NA NA LTS-017 chr19 54818412 54876626 58215 * c(LILRA4, LILRA5, LAIR1) NA 0 NA 0.932820997932556 152 0.166973107558111 3 NA NA -5.76486187402382 LTS-017 chr19 54876627 54881815 5189 * LAIR1 NA 0 NA 0.747 1 NA NA NA NA NA LTS-017 chr19 54881816 55281315 399500 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.163293091381182 39 0.0629408822298389 0.717725992532928 753 0.294195963230804 2 2 0 -6.76057403197564 LTS-017 chr19 55281316 55281352 37 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.28 1 NA 0.817133241499938 3 0.138283525169607 2 2 0 -5.76443511249618 LTS-017 chr19 55281353 55341708 60356 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.305948090168892 14 0.0587627002872991 0.85413462379034 139 0.504034629594294 4 3 1 -6.77352954861042 LTS-017 chr19 55341709 55351102 9394 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.191242649199652 40 0.214365897055742 0 NA NA -5.76562610446772 LTS-017 chr19 55351103 55377903 26801 * c(KIR2DS4, KIR3DL1, KIR3DL2) 0.381001396743994 15 0.0728329464956492 0.957792391388778 45 0.524694369912792 3 2 1 -6.7481242530802 LTS-017 chr19 55377904 55451797 73894 * c(NLRP7, FCAR, KIR3DL1, KIR3DL2, NCR1) 0.155 1 NA 0.712819269949411 149 0.358181836637796 2 2 0 -5.76446097748352 LTS-017 chr19 55451798 56249672 797875 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.144962589429077 55 0.071799791789462 0.750451201598823 2287 0.2268083883284 2 2 0 -6.77339148530389 LTS-017 chr19 56249673 56270508 20836 * c(NLRP9, RFPL4A) NA 0 NA 0.910685816315106 7 0.377760695225354 3 NA NA -5.76457214330011 LTS-017 chr19 56270509 56273088 2580 * RFPL4A NA 0 NA 0.468 1 NA NA NA NA NA LTS-017 chr19 56273089 56274086 998 * RFPL4A 0.274 1 NA 0.516511544365384 14 0.746578348714474 1 1 0 -5.7644257913429 LTS-017 chr19 56274087 56274593 507 * RFPL4A 0.337594170102569 3 0.0833726573883788 0.618702093602281 29 0.340758462916567 15 10 5 -6.7436176925999 LTS-017 chr19 56274594 56283091 8498 * character(0) NA 0 NA 1.178 1 NA NA NA NA NA LTS-017 chr19 56283092 56284587 1496 * RFPL4AL1 0.27732707822646 9 0.0410396150079408 1.66660337658142 33 1.07131316775679 15 11 4 -6.73495815497939 LTS-017 chr19 56284588 56307583 22996 * NLRP11 0.073 1 NA 0.873970908139535 45 0.240661615409091 3 3 0 -5.76609675823571 LTS-017 chr19 56307584 56487744 180161 * c(NLRP13, NLRP8, NLRP4, NLRP11) 0.11945293486238 9 0.0152269862780233 0.959140016602867 298 0.432104093931343 3 3 0 -6.90689670739 LTS-017 chr19 56487745 56490803 3059 * NLRP8 NA 0 NA 0.589 1 NA NA NA NA NA LTS-017 chr19 56490804 56758812 268009 * c(NLRP8, NLRP5, ZNF787, ZSCAN5B, ZNF444, ZSCAN5A, GALP) 0.147298865329067 11 0.048750571092226 0.730165328812537 319 0.284858921665203 2 2 0 -6.73749687980396 LTS-017 chr19 56758813 57832303 1073491 * c(MIMT1, ZNF667-AS1, PEG3-AS1, ZNF460, ZIM3, ZNF543, ZFP28, SMIM17, ZNF542P, ZNF582, ZNF583, ZIM2, ZNF582-AS1, ZNF470, ZNF805, DUXA, PEG3, ZNF471, USP29, ZNF71, ZNF667, AURKC, ZSCAN5A, ZNF835, ZNF264) 0.110921362036453 23 0.0272783920335631 0.966339480665623 1122 1.06090352688338 3 3 0 -6.73321948291247 LTS-017 chr19 57832304 57835074 2771 * ZNF543 NA 0 NA 1.223 1 NA NA NA NA NA LTS-017 chr19 57835075 59074653 1239579 * c(A1BG, LOC100128398, MZF1-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, SLC27A5, ZNF837, ZNF543, C19orf18, ZNF418, ZNF417, ZNF548, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF773, ZNF749, ZNF324B, ZNF772, A1BG-AS1, ZNF586, ZNF416, ZNF446, VN1R1, ZNF304, RPS5, RNF225, ZSCAN18, ZNF814, ZNF8, ZNF17, MZF1, NA NA NA NA NA NA NA NA NA LTS-017 ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, ZNF551, UBE2M) 0.104932367354829 44 0.0505832107034933 1.18961206714638 2964 0.297682328436315 4 4 0 -6.79783516014024 LTS-017 NA NA NA NA LTS-017 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 1.29271153907597 35 0.1657660242327 4 NA NA -5.76561277364291 LTS-017 chr20 68260 239795 171536 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) 0.43 1 NA 1.11324515922981 93 0.256344476078737 4 4 0 -5.77267492214444 LTS-017 chr20 239796 1559302 1319507 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.425124815803136 33 0.11576848795346 1.13296141929123 1834 0.296290316545 4 2 2 -6.7681879057497 LTS-017 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.085 1 NA NA NA NA NA LTS-017 chr20 1569093 1592347 23255 * SIRPB1 NA 0 NA 0.143391060077783 39 0.197250123792185 0 NA NA -5.81779279095286 LTS-017 chr20 1592348 1600390 8043 * SIRPB1 NA 0 NA 1.015 1 NA NA NA NA NA LTS-017 chr20 1600391 18396137 16795747 * c(SNORD119, SNAP25-AS1, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, ISM1-AS1, LINC00658, SIRPB1, NOP56, CENPB, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, MACROD2, BANF2, ISM1, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, UBOX5, BTBD3, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, SNX5, GNRH2, TMEM230, LOC339593, IDH3B, TGM6, ITPA, NA NA NA NA NA NA NA NA NA LTS-017 MIR103A2, LINC00851, OXT, PCNA, PCSK2, ESF1, TRMT6, PDYN, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, PRNP, TMX4, GPCPD1, CPXM1, OTOR, PAK5, KAT14, MAVS, EBF4, PTPRA, OVOL2, FASTKD5, RRBP1, BFSP1, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SNORA51, SNORD17, SNORD110, TGM3, LINC01433, ZNF133, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 NDUFAF5, ZNF343, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ATRN, CDS2, MGME1, LZTS3, RASSF2, CDC25B, SLC23A2) 0.44819374731208 187 0.0756425658538958 1.15496310786899 8729 0.290724501646918 4 2 2 -6.89297632174997 LTS-017 NA NA NA NA LTS-017 chr20 18396138 25277500 6881363 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, MIR3192, CST8, SEC23B, POLR3F, RBBP9, CSTL1, CST9L, CST9, LINC00261, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, CFAP61, ABHD12, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, DZANK1, KIZ, APMAP, RALGAPA2, SLC24A3, PYGB, NAPB, GZF1, NKX2-4, SSTR4, THBD, NA NA NA NA NA NA NA NA NA LTS-017 SYNDIG1, ACSS1, CST7, GGTLC1, DTD1, ENTPD6) 0.438652741740343 65 0.0887843730835903 1.20628624593898 3244 0.291028126180979 4 2 2 -6.73583091402899 LTS-017 NA NA NA NA LTS-017 chr20 25277501 25428761 151261 * c(ABHD12, PYGB, GINS1) 0 1 NA 1.16974490439049 177 0.321623199026483 4 4 0 -5.76488174826358 LTS-017 chr20 25428762 25900230 471469 * c(NANP, NINL, ZNF337, FAM182B, GINS1) 0.336021716366086 10 0.180843578818823 1.21353801781308 380 0.400268625464941 4 3 1 -6.7654251148962 LTS-017 chr20 25900231 26188981 288751 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.300326734953121 19 0.101332496533941 0.946452475329968 51 0.782600392858297 4 3 1 -6.75087652345994 LTS-017 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.856324604936998 3 0.0242487113059643 3 NA NA -5.76483397652616 LTS-017 chr20 29625845 29625876 32 * FRG1BP 0.256 1 NA 1.555 1 NA NA NA NA NA LTS-017 chr20 29625877 29632709 6833 * FRG1BP 0.326010147501083 12 0.0911453634187021 1.05659231876599 33 0.600032054068023 10 7 3 -6.75050068885006 LTS-017 chr20 29632710 29633916 1207 * FRG1BP 0.452 1 NA 0.892916429444831 3 0.300631003058567 3 3 0 -5.7644416195611 LTS-017 chr20 29633917 30435487 801571 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, MLLT10P1, LINC00028, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.446069013549181 10 0.0337811584565519 1.22279800003598 591 0.323970149266328 4 2 2 -6.76593207602827 LTS-017 chr20 30435488 30449181 13694 * DUSP15 0.461 1 NA 1.18275616740001 45 0.227432856114511 4 4 0 -5.76443348151587 LTS-017 chr20 30449182 31196726 747545 * c(DUSP15, TSPY26P, NOL4L, CCM2L, LOC149950, TTLL9, ASXL1, POFUT1, HCK, XKR7, PLAGL2, PDRG1, KIF3B, TM9SF4) 0.216801439726167 9 0.225391326363727 1.22378552084021 1344 0.28072982463737 4 3 1 -6.80552980754711 LTS-017 chr20 31196727 31315862 119136 * c(COMMD7, C20orf203) 0.5 1 NA 1.15965548269292 87 0.176807819620219 4 4 0 -5.7667285729136 LTS-017 chr20 31315863 31897554 581692 * c(BPIFB6, BPIFA3, BPIFA2, SUN5, COMMD7, BPIFB4, DNMT3B, MAPRE1, BPIFA4P, BPIFB3, BPIFA1, BPIFB2, BPIFB1) 0.440319486669693 50 0.0714434870141057 1.28025131579514 997 0.423621648164902 4 2 2 -6.74220748013926 LTS-017 chr20 31897555 31981849 84295 * c(CDK5RAP1, BPIFB1) 0.467 1 NA 1.20696338432791 71 0.207865325538841 4 4 0 -5.76448762082653 LTS-017 chr20 31981850 33862830 1880981 * c(MIR499B, MIR4755, PROCR, MMP24, PXMP4, C20orf144, CHMP4B, PIGU, HMGB3P1, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, ASIP, CDK5RAP1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.447708962293029 36 0.0896521452217243 1.24845266430461 2294 0.284490828223777 4 2 2 -6.76392681475638 LTS-017 chr20 33862831 39658442 5795612 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MMP24-AS1, MYL9, MMP24, BLCAP, CEP250, VSTM2L, SNHG11, FAM83C, SLC32A1, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, ADIG, EPB41L1, DLGAP4, SAMHD1, AAR2, PPP1R16B, SNORA71B, SNORA71A, GHRH, LOC339568, ARHGAP40, EIF6, SNHG17, LBP, NNAT, PHF20, SCAND1, ERGIC3, UQCC1, EDEM2, C20orf24, CTNNBL1, RALGAPB, NDRG3, RPRD1B, RBL1, TGIF2, DHX35, RPN2, MANBAL, NORAD, NA NA NA NA NA NA NA NA NA LTS-017 SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, TOP1, ACTR5, DSN1, FAM83D, GDF5, SLA2, KIAA1755, CPNE1, NFS1, RBM39, TTI1, MAFB) 0.436444674522425 89 0.109926342689823 1.19459006430532 5450 0.318106530985433 4 2 2 -6.73337906292236 LTS-017 NA NA NA NA LTS-017 chr20 39658443 39690020 31578 * TOP1 NA 0 NA 0.853 1 NA NA NA NA NA LTS-017 chr20 39690021 39730017 39997 * TOP1 NA 0 NA 0.870678940717109 55 0.126020833615123 3 NA NA -5.77607044288501 LTS-017 chr20 39730018 39741351 11334 * TOP1 NA 0 NA 1.253 1 NA NA NA NA NA LTS-017 chr20 39741352 45364961 5623610 * c(ADA, ACOT8, ZNF663P, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, SGK2, WFDC2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FITM2, WFDC12, SPATA25, OCSTAMP, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, GTSF1L, WFDC5, WFDC13, ZHX3, WFDC11, WFDC9, L3MBTL1, TP53TG5, WFDC10B, HNF4A, KCNS1, SPINT4, MMP9, MYBL2, SLC35C2, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, ZNF334, NA NA NA NA NA NA NA NA NA LTS-017 DBNDD2, EPPIN, JPH2, SLC12A5, NCOA5, KCNK15, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, SLPI, STK4, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, PABPC1L, SLC2A10, CHD6, TOX2, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40) 0.462256213539943 155 0.047563174314807 1.15972478881605 6402 0.278357465215261 4 2 2 -6.9241114690534 LTS-017 NA NA NA NA LTS-017 chr20 45364962 45607149 242188 * c(EYA2, SLC2A10) NA 0 NA 0.834 1 NA NA NA NA NA LTS-017 chr20 45607150 45978724 371575 * c(LOC100131496, MIR3616, EYA2, ZMYND8) 0.432188093895042 9 0.0610971448687343 0.928712912432625 308 0.189620549799367 4 2 2 -7.1145181473993 LTS-017 chr20 45978725 45985071 6347 * ZMYND8 NA 0 NA 1.232 1 NA NA NA NA NA LTS-017 chr20 45985072 59139743 13154672 * c(SNORD12B, MIR298, MIR4325, MIR3194, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, TRERNA1, SYCP2, CEBPB, ARFGEF2, FAM210B, PHACTR3, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, FAM65C, CSE1L, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, SLC9A8, ADNP, ZMYND8, SPO11, SNORD12C, MOCS3, GNAS, LINC00494, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, NA NA NA NA NA NA NA NA NA LTS-017 TMEM189, TMEM189-UBE2V1, FAM209B, SUMO1P1, MIR296, MC3R, ZFAS1, NFATC2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, BCAS4, DDX27, ZFP64, DOK5, RNF114, SULF2, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, PREX1, PTPN1, CDH26, FAM217B, BMP7, SNAI1, STAU1, AURKA, SNORD12, MIR645, TFAP2C, UBE2V1, ZNF217, NPEPL1, TUBB1, ZBP1, NCOA3, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB, B4GALT5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 SPATA2) 0.44541905085874 169 0.0614187382780309 1.15342181261549 7962 0.278373670590873 4 2 2 -6.87889487759921 LTS-017 NA NA NA NA LTS-017 chr20 59139744 59197235 57492 * MIR646HG NA 0 NA 1.305 1 NA NA NA NA NA LTS-017 chr20 59197236 62489039 3291804 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, RBBP8NL, LSM14B, EEF1A2, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, STMN3, RTEL1, YTHDF1, LIME1, GID8, MRGBP, ARFGAP1, NA NA NA NA NA NA NA NA NA LTS-017 SLC2A4RG, PSMA7, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.458049015432562 160 0.0523139106138195 1.22137448508048 4513 0.289198141083383 4 2 2 -6.82602734693063 LTS-017 NA NA NA NA LTS-017 chr20 62489040 62907521 418482 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RGS19, SAMD10, ABHD16B, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, SOX18, UCKL1, PCMTD2, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5) 0.421004246379715 37 0.0423470751619846 1.46116533611891 1191 0.352382674225619 5 3 2 -6.77872452896394 LTS-017 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.45267923920566 11 0.252537269976676 5 NA NA -5.7644290261523 LTS-017 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.348 1 NA 0.443490154688404 29 0.371804198562853 1 1 0 -5.76476405105814 LTS-017 chr21 9907223 11098723 1191501 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.310039819969738 37 0.115219479813652 0.804604675569254 164 0.644320636947296 3 2 1 -6.93594532817929 LTS-017 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 0.85182875042062 3 0.0594670777265315 3 NA NA -5.76450016465035 LTS-017 chr21 14745307 14756973 11667 * character(0) 0.34 1 NA 0.789176626358032 15 0.553056528584126 2 2 0 -5.76470695742513 LTS-017 chr21 14756974 15956136 1199163 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.365074530302455 16 0.0495149388232144 0.840521584844559 363 0.275237011681061 3 2 1 -6.87843837435122 LTS-017 chr21 15956137 15964241 8105 * SAMSN1-AS1 NA 0 NA 1.153 1 NA NA NA NA NA LTS-017 chr21 15964242 38458048 22493807 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, OLIG2, USP16, CCT8, BTG3, ADAMTS5, LINC00310, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, CXADR, RCAN1, LINC00189, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, GART, CLDN17, NA NA NA NA NA NA NA NA NA LTS-017 D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, PIGP, ATP5J, RIPPLY3, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, SETD4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, TTC3, KRTAP19-8, LINC01548, TMEM50B, MIR802, RUNX1-IT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 NRIP1, CHAF1B, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.355613032411332 210 0.0622768001788015 0.955611011936989 8778 0.763407826952251 3 2 1 -6.76305830643712 LTS-017 NA NA NA NA LTS-017 chr21 38458049 38791322 333274 * c(DSCR3, DYRK1A, DSCR9, TTC3) NA 0 NA 0.935872552778768 464 0.23326275757493 3 NA NA -5.76531859084228 LTS-017 chr21 38791323 38997701 206379 * c(DYRK1A, KCNJ6) 0.123 1 NA 0.695398194772091 177 0.200946779789209 2 2 0 -5.7648980090138 LTS-017 chr21 38997702 48084820 9087119 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, DSCR4, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, NA, BACE2, DSCR10, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, HMGN1, AIRE, PRMT2, NA NA NA NA NA NA NA NA NA LTS-017 KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00114, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, BRWD1, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 PRDM15, LOC642852, SH3BGR, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, DSCR8, FAM207A, PDXK, RRP1, PSMG1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.152806957356625 351 0.0548344842169657 0.730689957892728 9588 0.211147922856581 2 2 0 -6.89655465843329 LTS-017 NA NA NA NA LTS-017 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 0.886121451688176 5 0.174727788287954 3 NA NA -5.76442686365745 LTS-017 chr22 16157787 16157883 97 * character(0) 0.423 1 NA 0.946 1 NA NA NA NA NA LTS-017 chr22 16157884 19512912 3355029 * c(CECR7, CECR5-AS1, FLJ41941, MIR3198-1, USP18, GAB4, C22orf39, CCT8L2, XKR3, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, HSFY1P1, CECR6, CECR5, CECR3, CECR2, GSC2, TPTEP1, TUBA8, CECR1, ATP6V1E1, PEX26, PRODH, MICAL3, BID, MRPL40, SLC25A1, MIR648, CLDN5, HIRA, UFD1L, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR2) 0.446539151192397 87 0.0905423839013794 1.19500180232017 3028 0.403758140323239 4 2 2 -6.73792797548102 LTS-017 chr22 19512913 19702096 189184 * c(SEPT5-GP1BB, LINC00895) NA 0 NA 2.718 1 NA NA NA NA NA LTS-017 chr22 19702097 20307418 605322 * c(MIR1286, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, TANGO2, COMT, LINC00896, TRMT2A, LOC284865, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, RANBP1, RTN4R, TBX1, C22orf29, DGCR6L) 0.440295232158061 50 0.05520411475347 1.74277848810607 1457 0.381127019184849 6 3 3 -6.73609558614145 LTS-017 chr22 20307419 20307499 81 * DGCR6L NA 0 NA 1.396 1 NA NA NA NA NA LTS-017 chr22 20307500 20717994 410495 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) NA 0 NA 0.552076672535093 39 0.487415896755796 1 NA NA -5.80058810649333 LTS-017 chr22 20717995 20718442 448 * character(0) NA 0 NA 1.503 1 NA NA NA NA NA LTS-017 chr22 20718443 21385985 667543 * c(TUBA3FP, CRKL, AIFM3, POM121L4P, SERPIND1, THAP7-AS1, MED15, PI4KA, SLC7A4, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29) 0.453025926630533 46 0.0506439355950975 1.67136785366745 1430 0.380141337672371 6 3 3 -6.78307704308778 LTS-017 chr22 21385986 21576319 190334 * c(LRRC74B, BCRP2, P2RX6P, SLC7A4) NA 0 NA 1.73027998278159 53 0.403493682316199 6 NA NA -5.76479653788692 LTS-017 chr22 21576320 21797024 220705 * c(HIC2, POM121L8P) NA 0 NA 0.902 1 NA NA NA NA NA LTS-017 chr22 21797025 21800269 3245 * HIC2 0.098 1 NA 0.979138364772481 23 0.254268803642776 3 3 0 -5.76443628053357 LTS-017 chr22 21800270 24340955 2540686 * c(DDTL, MIR301B, IGLL5, ZNF280A, ZNF280B, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, YPEL1, VPREB3, IGLL1, PI4KAP2, CHCHD10, MIR130B, MIF, MMP11, DRICH1, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, TOP3B, GGTLC2, GUSBP11, DERL3, RAB36, PPM1F, BMS1P20) 0.105567984063717 96 0.0467022624268833 0.991927855773365 2860 0.450874843524612 3 3 0 -6.75503001843566 LTS-017 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.548 1 NA NA NA NA NA LTS-017 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.99084383454598 57 0.307066469051963 7 NA NA -5.76461380989558 LTS-017 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.869 1 NA NA NA NA NA LTS-017 chr22 24400149 24838165 438017 * c(ADORA2A, SPECC1L, CABIN1, GGT5, POM121L9P, SUSD2, ADORA2A-AS1, GSTTP2) 0.108769852060546 11 0.0359722114972099 0.976720607002085 631 0.215992755864329 3 3 0 -6.73972989713941 LTS-017 chr22 24838166 24838171 6 * c(ADORA2A, SPECC1L, ADORA2A-AS1) NA 0 NA 0.767 1 NA NA NA NA NA LTS-017 chr22 24838172 24939123 100952 * c(ADORA2A, SPECC1L, UPB1, ADORA2A-AS1, GUCD1) 0.168207238574392 4 0.0454413541464894 0.701981233899181 152 0.145758826043114 2 2 0 -6.82761564763395 LTS-017 chr22 24939124 24939727 604 * GUCD1 NA 0 NA 1.013 1 NA NA NA NA NA LTS-017 chr22 24939728 29196401 4256674 * c(LOC100128531, MIR548J, MIR3199-2, MIR3199-1, CHEK2, SGSM1, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, GRK3, TTC28, SEZ6L, PITPNB, TFIP11, TMEM211, GGT1, TTC28-AS1, LRRC75B, SRRD, MN1, PIWIL3, MIAT, ASPHD2, BCRP3, POM121L10P, SNRPD3, TOP1P2, XBP1, GUCD1, TPST2, MYO18B, KIAA1671, HPS4, IGLL3P, LRP5L) 0.107334433367528 51 0.0430303039592277 0.932488965957604 2587 0.263263609900654 3 3 0 -6.75147132592461 LTS-017 chr22 29196402 29196404 3 * XBP1 NA 0 NA 0.78 1 NA NA NA NA NA LTS-017 chr22 29196405 31354653 2158249 * c(MIR3200, MIR3653, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, EMID1, HORMAD2, DUSP18, MORC2-AS1, AP1B1, CABP7, RNF215, EWSR1, MORC2, PES1, SEC14L2, OSBP2, C22orf31, RHBDD3, SEC14L3, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, NEFH, NF2, OSM, MTFP1, CCDC157, ZMAT5, RFPL1, GATSL3, TCN2, SEC14L6, XBP1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, GAL3ST1) 0.131329798032507 52 0.0492585867747008 0.738193837965385 3507 0.200704946876921 2 2 0 -6.88873651299098 LTS-017 chr22 31354654 31500536 145883 * c(MORC2, TUG1, SMTN) 0.141 1 NA 0.775526667761907 157 0.183719571468898 2 2 0 -5.7884345097394 LTS-017 chr22 31500537 39358462 7857926 * c(HMGXB4, TOM1, MIR3909, MIR3928, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, APOBEC3A_B, DNAL4, CACNG2, DDX17, RFPL3S, RFPL3, RFPL2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, PIK3IP1, ELFN2, C1QTNF6, ANKRD54, SELENOM, CSF2RB, CSNK1E, C22orf42, TMPRSS6, APOBEC3A, GCAT, CBX6, NPTXR, SLC16A8, RBFOX2, RASD2, PATZ1, SH3BP1, PISD, MAFF, APOL2, AP1B1P1, PRR14L, BPIFC, C22orf24, CBY1, SUN2, FBXO7, TXN2, TMEM184B, NA NA NA NA NA NA NA NA NA LTS-017 GGA1, INPP5J, CYTH4, CARD10, H1F0, HMOX1, LOC339666, TEX33, IL2RB, KCNJ4, LGALS1, LGALS2, LIMK2, LOC400927, MB, MCM5, MFNG, MPST, MYH9, NCF4, DRG1, PLA2G3, EIF3L, RTCB, POLR2F, EIF4ENIF1, TOMM22, PDXP, PVALB, RAC2, FAM227A, SLC5A1, SMTN, SLC5A4, SOX10, SSTR3, TIMP3, MIR658, MIR659, TST, YWHAH, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, PLA2G6, C22orf23, GALR3, MICALL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 APOL1, EIF3D, RNF185, ISX, LARGE1, PICK1, GTPBP1, DEPDC5, SFI1, JOSD1) 0.154729584257283 184 0.0520333244828309 0.736286133468855 8859 0.216109897990163 2 2 0 -6.93163221468972 LTS-017 NA NA NA NA LTS-017 chr22 39358463 39388348 29886 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) NA 0 NA 0.125997961730343 52 0.0844979918902465 0 NA NA -6.36988332382629 LTS-017 chr22 39388349 42777997 3389649 * c(LOC100130899, NDUFA6-AS1, MIR1281, LOC100506472, MIR4766, APOBEC3A_B, TAB1, SLC25A17, TOB2, FAM83F, TNFRSF13C, APOBEC3D, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, ADSL, APOBEC3H, WBP2NL, POLR3H, APOBEC3F, EP300, TNRC6B, ZC3H7B, CBX7, XRCC6, SNORD43, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, LINC00634, OGFRP1, MIR33A, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, PDGFB, PMM1, MIEF1, NA NA NA NA NA NA NA NA NA LTS-017 SEPT3, MKL1, RANGAP1, APOBEC3G, RPL3, XPNPEP3, SREBF2, ST13, TCF20, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, APOBEC3B, RBX1) 0.159541896892404 120 0.0548176190521206 0.728006955268437 5590 0.192514249792907 2 2 0 -6.8109887453764 LTS-017 NA NA NA NA LTS-017 chr22 42777998 51183255 8405258 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, NA NA NA NA NA NA NA NA NA LTS-017 LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.177210398353533 324 0.0576314137376973 0.635976404818749 8235 0.183922380895965 2 2 0 -8.11264471336712 LTS-017 NA NA NA NA LTS-017 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.567410169945526 76 0.372123630654152 1 NA NA -5.77191323559766 LTS-017 chrX 2699993 2726299 26307 * XG 0.161 1 NA 0.916157095113404 25 0.320397705984297 3 3 0 -5.76462078928575 LTS-017 chrX 2726300 16188564 13462265 * c(GS1-600G8.3, LINC01546, LINC01203, CLDN34, PIR-FIGF, MIR4770, MIR4767, MSL3, CA5B, CLCN4, ASB11, ASB9, MOSPD2, TCEANC, FAM9A, FAM9B, FAM9C, FANCB, VEGFD, MXRA5, EGFL6, AMELX, VCX, GLRA2, GPM6B, GRPR, HCCS, CA5BP1, ARSH, TLR8-AS1, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, TLR7, TLR8, VCX2, VCX3A, PIGA, GEMIN8, WWC3, PRKX, PRPS2, TMEM27, NLGN4X, ACE2, TRAPPC2, NA NA NA NA NA NA NA NA NA LTS-017 MAGEB17, BMX, TBL1X, TMSB4X, MIR651, XG, PUDP, PNPLA4, ZRSR2, OFD1, PIR, INE2, AP1S2, GYG2, ATXN3L, RAB9A, FRMPD4) 0.105707586735057 64 0.0579856453740445 0.939756889112217 5155 0.262831976819224 3 3 0 -6.75392886743493 LTS-017 NA NA NA NA LTS-017 chrX 16188565 16189643 1079 * MAGEB17 NA 0 NA 0.972806561362095 25 0.160772541187853 3 NA NA -5.76442335158254 LTS-017 chrX 16189644 16608803 419160 * CTPS2 NA 0 NA 0.487 1 NA NA NA NA NA LTS-017 chrX 16608804 16759813 151010 * c(CTPS2, S100G, SYAP1) 0.25 1 NA 0.474826632701226 123 0.101125345318637 1 1 0 -5.77627737358761 LTS-017 chrX 16759814 44401381 27641568 * c(SUPT20HL1, PHKA2-AS1, LOC100132831, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, IL1RAPL1, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, ZNF645, FAM47A, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, GK, GPR82, GPR34, NA NA NA NA NA NA NA NA NA LTS-017 LINC01281, CFAP47, MAGEB18, SH3KBP1, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAP3K15, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, OTC, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, FTHL17, POLA1, PPEF1, BCOR, TXLNG, PRRG1, MID1IP1, RBBP7, NYX, RPGR, RPS6KA3, RS1, SAT1, SCML1, NA, SMS, SCARNA23, CDKL5, DYNLT3, TSPAN7, LOC729609, XK, ZFX, APOO, CXorf21, EFHC2, KLHL15, PPP1R2P9, USP9X, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 TMEM47, SRPX, CASK, REPS2, MED14, SYAP1, SYTL5, PCYT1B) 0.220493453880869 83 0.0754471672856259 0.483559175996862 9962 0.1309720295294 1 1 0 -8.7781081779331 LTS-017 NA NA NA NA LTS-017 chrX 44401382 44820722 419341 * c(FUNDC1, DUSP21, KDM6A) NA 0 NA 0.423855962162288 51 0.0812333651146075 1 NA NA -5.98193431249262 LTS-017 chrX 44820723 44833851 13129 * KDM6A NA 0 NA 0.96 1 NA NA NA NA NA LTS-017 chrX 44833852 44929077 95226 * KDM6A 0.154 1 NA 0.721344535727983 83 0.15791654450347 2 2 0 -5.76573155848582 LTS-017 chrX 44929078 53262161 8333084 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, ELK1, IQSEC2, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIR188, MIR221, MIR222, SPANXN5, NA NA NA NA NA NA NA NA NA LTS-017 TBC1D25, FOXP3, CDK16, CFP, PLP2, GPR173, NDUFB11, NUDT11, OTUD5, KRBOX4, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, RP2, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, KDM6A, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, MAGED4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 USP11, RBM10, KDM5C, UXT, SLC9A7, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.161941293548297 52 0.0838552292471765 0.767153208155817 6495 0.19295835438196 2 2 0 -7.59590844370651 LTS-017 NA NA NA NA LTS-017 chrX 53262162 57936091 4673930 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, ZXDA, SMC1A, TSR2, FAM104B, PAGE5) 0.175775080048783 28 0.0465463727353143 0.719168801271504 3395 0.166374672441506 2 2 0 -6.95559893479609 LTS-017 chrX 57936092 57937169 1078 * ZXDA NA 0 NA 0.682901181691734 19 0.187009459685054 2 NA NA -5.76442760409579 LTS-017 chrX 61999880 64723993 2724114 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MTMR8, ZC4H2, LINC01278) 0 1 NA 0.715403317196233 669 0.188338038166937 2 2 0 -5.77581600302755 LTS-017 chrX 64723994 101439808 36715815 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, MIR676, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, VSIG4, DACH2, COX7B, MAP2K4P1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, NA NA NA NA NA NA NA NA NA LTS-017 YIPF6, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 ARMCX6, POU3F4, ATRX, ERCC6L, GDPD2, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, LAS1L, FRMD8P1, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, STARD8, ARMCX2, HEPH, MED12) 0.142786922418703 99 0.0644388795854362 0.722238479414726 12528 0.431226480938668 2 2 0 -6.81522484399568 LTS-017 NA NA NA NA LTS-017 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.094 1 NA NA NA NA NA LTS-017 chrX 101472923 101624980 152058 * character(0) NA 0 NA 0.17094557002933 40 0.304749985801729 0 NA NA -5.80814945287093 LTS-017 chrX 101624981 148713637 47088657 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00893, CXorf51B, LINC00630, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR514B, MIR4329, LINC00629, ARMCX5-GPRASP2, MIR3978, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, TMSB15A, MID2, SLC6A14, NA NA NA NA NA NA NA NA NA LTS-017 GPRASP2, ATG4A, COL4A5, COL4A6, SLITRK4, SPANXN3, MAGEC3, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ADGRG4, ACTRT1, GPR119, RBMXL3, DOCK11, RAB40A, AMOT, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, H2BFWT, FAM122B, FAM122C, DCX, ZCCHC12, NA, NA, TSC22D3, AGTR2, ELF4, CT83, SLC25A43, NRK, INTS6L, ZNF449, TMEM31, F9, ACSL4, GPC4, FGF13, FHL1, SEPT6, FMR1, AFF2, ATP1B4, KCNE5, LDOC1, CT47A11, FAM127B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 IL1RAPL2, SNORA69, SNORD61, BEX3, GPC3, RBMX, HTATSF1, GLUD2, RAB40AL, ATP11C, LINC00632, H2BFM, LOC286437, FIRRE, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, HPRT1, XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IL13RA2, LOC389895, UBE2NL, LAMP2, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, GLRA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 FAM127C, CT45A3, CT45A5, SPANXN4, NDUFA1, SPANXN1, SPANXN2, MIR424, OCRL, PAK3, ZDHHC9, TCEAL9, RAB9B, LUZP4, TFDP3, MAGEC2, VGLL1, RBMX2, STK26, PLP1, PLS3, CT45A6, CT45A1, SASH3, WDR44, NUP62CL, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, TEX13A, MOSPD1, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, RGAG1, LRCH2, RAP2C, RPL39, SPANXA2-OT1, BCORL1, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, SPANXC, ARMCX5, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, SNORA35, BRS3, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-017 MIR766, RNF113A, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, GPR101, USP26, TMEM164, PHF6, CUL4B, TMEM185A, SLITRK2, BEX2, IRS4, MIR503HG, TCEAL3, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, TCEAL8, AIFM1, TMEM257, CHRDL1, CXorf40A, RIPPLY1, TCEAL1, MMGT1, RAB33A, ARHGEF6, CD40LG, MORF4L2, GPRASP1, MAGEC1, AMMECR1) 0.160054284577253 167 0.0758892771228156 0.708615023815413 18007 0.187812590599097 2 2 0 -6.7742613929812 LTS-017 NA NA NA NA LTS-017 chrX 148713638 148770462 56825 * MAGEA11 NA 0 NA 1.47 1 NA NA NA NA NA LTS-017 chrX 148770463 148851528 81066 * MAGEA11 NA 0 NA 1.25448647205764 57 0.266727640272269 4 NA NA -5.76590428790103 LTS-017 chrX 148851529 148853651 2123 * character(0) NA 0 NA 0.32 1 NA NA NA NA NA LTS-017 chrX 148853652 149014081 160430 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.520821589861131 39 0.18264160756825 1 NA NA -5.81211646715794 LTS-017 chrX 149014082 149014097 16 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.644 1 NA NA NA NA NA LTS-017 chrX 149014098 154158867 5144770 * c(CSAG4, SMIM9, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, NA NA NA NA NA NA NA NA NA LTS-017 MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA12, MECP2, MPP1, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, SNORA36A, SNORA56, TAZ, MIR767, ZNF185, PRRG3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, IKBKG, MTMR1, FATE1, FAM50A, FAM58A, GPR50) 0.128746086470585 60 0.0633084102016461 0.74763577507014 6266 0.265235096207065 2 2 0 -6.95309174331032 LTS-017 NA NA NA NA LTS-017 chrX 154158868 154774986 616119 * c(CMC4, RAB39B, CLIC2, F8, MTCP1, TMLHE, FUNDC2, VBP1, BRCC3) NA 0 NA 0.700353083444907 602 0.174964431763265 2 NA NA -5.76477723956483 LTS-017 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.67612306912194 25 0.213937662260139 2 NA NA -5.77925127924685 LTS-017 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 1.07212893216766 19 0.751432518866037 4 NA NA -5.8641963367328 LTS-017 chr1 65893 783071 717179 * c(LOC100288069, LINC01128, LOC729737, OR4F5, LINC00115) 0.361 1 NA 1.13221922458026 41 0.365405876906829 3 3 0 -5.76970701510562 LTS-018 chr1 783072 1593768 810697 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.331354272830676 54 0.073636470850206 1.05285403306263 2877 0.252627719805784 3 2 1 -6.85715977860947 LTS-018 chr1 1593769 1593784 16 * c(SLC35E2B, CDK11B) NA 0 NA 0.434 1 NA NA NA NA NA LTS-018 chr1 1593785 1596067 2283 * c(SLC35E2B, CDK11B) NA 0 NA 0.258838446023093 75 0.265361750028858 0 NA NA -5.7650778140438 LTS-018 chr1 1596068 1596196 129 * c(SLC35E2B, CDK11B) NA 0 NA 0.561 1 NA NA NA NA NA LTS-018 chr1 1596197 1645508 49312 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.292973697094638 8 0.086104587566517 0.888709306247755 146 0.319652538982324 4 3 1 -6.78950380152916 LTS-018 chr1 1645509 3160719 1515211 * c(LOC100129534, NA, TTC34, MIR4251, RER1, LOC115110, FAM213B, ACTRT2, CALML6, FAAP20, GABRD, GNB1, TMEM52, HES5, LINC00982, PEX10, PANK4, PRKCZ, PRDM16, SKI, NADK, CDK11A, SLC35E2B, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, CDK11B, SLC35E2) 0.390451519114769 37 0.0589177800396859 1.07119608475196 1871 0.234381550878667 3 2 1 -6.8544686789278 LTS-018 chr1 3160720 3301701 140982 * PRDM16 NA 0 NA 1.489 1 NA NA NA NA NA LTS-018 chr1 3301702 3755739 454038 * c(TPRG1L, CCDC27, MEGF6, ARHGEF16, SMIM1, WRAP73, TP73-AS1, LRRC47, PRDM16, MIR551A, TP73, CEP104) 0.217495858467871 22 0.0475771644813621 1.60939822266319 1065 0.418112146962942 6 5 1 -6.84526599769918 LTS-018 chr1 3755740 3756125 386 * CEP104 NA 0 NA 1.009 1 NA NA NA NA NA LTS-018 chr1 3756126 17009783 13253658 * c(LINC01134, NPPA-AS1, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, MST1P2, PARK7, CTRC, ACOT7, CROCCP3, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, PHF13, C1orf64, SLC2A7, DFFA, DFFB, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, ICMT, MTOR, CHD5, SZRD1, NA NA NA NA NA NA NA NA NA LTS-018 NPHP4, FBXO2, FBXO6, HSPB7, LOC284661, SLC25A34, UBIAD1, ZBTB48, C1orf174, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, GPR153, RNF207, TMEM82, HES3, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, HES2, FBLIM1, CASZ1, TMEM51, VPS13D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NBPF1, NECAP2, DNAJC11, AJAP1, CTNNBIP1, AGTRAP, PLEKHG5, DISP3, MIIP, RPL22, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, LINC01346, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, NOL9, AGMAT, GPR157, SPSB1, TAS1R1, ESPN, CASP9, SLC25A33, DDI2, LZIC, CROCCP2, KCNAB2, TNFRSF25, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 FBXO44, TNFRSF8, H6PD, CEP104, KLHL21, MFN2) 0.33457286315697 297 0.0886766574262899 1.07042851263033 12843 0.316344654424514 3 2 1 -6.81795309299627 LTS-018 NA NA NA NA LTS-018 chr1 17009784 17009812 29 * character(0) 0.338 1 NA 1.72 1 NA NA NA NA NA LTS-018 chr1 17009813 17029313 19501 * ESPNP 0.352804348729363 12 0.042939968666627 1.71100912006059 92 0.531242634866458 6 4 2 -6.73579233234736 LTS-018 chr1 17029314 17029394 81 * ESPNP NA 0 NA 1.235 1 NA NA NA NA NA LTS-018 chr1 17029395 17248500 219106 * c(MST1L, ESPNP, CROCC) 0.314115694667446 36 0.0835115998025861 1.10005087062734 197 0.454816122998238 4 3 1 -6.81895627376947 LTS-018 chr1 17248501 17248531 31 * CROCC NA 0 NA 1.671 1 NA NA NA NA NA LTS-018 chr1 17248532 17274945 26414 * CROCC 0.360438418973988 6 0.0568978617055744 1.67497737082401 77 0.518285788846296 3 2 1 -6.74649594801038 LTS-018 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.874 1 NA NA NA NA NA LTS-018 chr1 17275408 24134721 6859314 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, CELA3A, HNRNPR, PADI2, LYPLA2, IFFO2, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, ATP13A2, CELA3B, PADI4, AKR7L, ALPL, TMCO4, GALE, MDS2, PLA2G2D, LINC00339, PADI1, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, LDLRAD2, NA NA NA NA NA NA NA NA NA LTS-018 MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, RCC2, PITHD1, KIF17, RAP1GAP, RPL11, SDHB, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, ALDH4A1, EIF4G3, CROCC, CDA, ZBTB40, CDC42) 0.350101904657588 184 0.069218295687112 1.09524118236302 8404 0.289943944874119 3 2 1 -6.76007174089101 LTS-018 NA NA NA NA LTS-018 chr1 24134722 24143932 9211 * HMGCL 0.393 1 NA 1.08144486422494 21 0.343146407737072 3 3 0 -5.76441146415811 LTS-018 chr1 24143933 24255756 111824 * c(MIR378F, CNR2, FUCA1, HMGCL) NA 0 NA 1.1180495710651 174 0.195238659365122 3 NA NA -5.76578635030736 LTS-018 chr1 24255757 26596150 2340394 * c(MIR3917, RCAN3AS, SRRM1, CNKSR1, RCAN3, MYOM3, PDIK1L, IFNLR1, PAQR7, EXTL1, TMEM50A, CLIC4, SYF2, LDLRAP1, LOC284632, CATSPER4, STMN1, NCMAP, PAFAH2, ZNF593, TMEM57, PNRC2, MTFR1L, RSRP1, MAN1C1, NIPAL3, SELENON, GRHL3, IL22RA1, RHCE, RHD, LOC646471, CEP85, SLC30A2, AUNIP, FAM110D, TRIM63, RUNX3, STPG1) 0.422208237464442 107 0.0889770813276488 0.842828812342492 3150 0.231381162731316 2 1 1 -6.81679587918137 LTS-018 chr1 26596151 26597409 1259 * CEP85 NA 0 NA 0.711 1 NA NA NA NA NA LTS-018 chr1 26597410 27427778 830369 * c(MIR1976, CD52, NUDC, FAM46B, KDF1, ZNF683, SFN, HMGN2, TRNP1, GPN2, AIM1L, PIGV, RPS6KA1, GPATCH3, CEP85, SLC9A1, LIN28A, DHDDS, ARID1A, SH3BGRL3, ZDHHC18, NR0B2, UBXN11) 0.440112360125833 29 0.0633691390445793 0.711157410753582 1513 0.157840734973974 2 1 1 -7.00928154399637 LTS-018 chr1 27427779 41012917 13585139 * c(FAM229A, MATN1-AS1, MIR4255, MIR4254, MIR3659, MIR3605, TMEM35B, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, ZMPSTE24, PPIE, CAP1, KHDRBS1, GMEB1, SF3A3, RCC1, SMIM12, AZIN2, TMEM54, CSMD2, RAB42, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PHC2, AGO3, AGO4, FAM76A, TXLNA, EPB41, AK2, EYA3, FABP3, FGR, NA NA NA NA NA NA NA NA NA LTS-018 FHL3, DNAJC8, WDTC1, NCDN, MACF1, KPNA6, STX12, FNDC5, IFI6, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, GPR3, LINC01226, RSPO1, EPHA10, GRIK3, GNL2, HCRTR1, HDAC1, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, CD164L2, LCK, TMEM200B, CSMD2-AS1, MATN1, MTF1, MYCL, NDUFS5, OPRD1, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, MED18, TRIT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TRIM62, PEF1, PPT1, MAP7D1, IQCC, TMEM234, PSMB2, PTAFR, ADGRB2, KIAA1522, DLGAP3, RBBP4, RLF, RPA2, CLSPN, OXCT2, RRAGC, TINAGL1, SFPQ, SRSF4, KIAA0754, ACTG1P20, SMAP2, S100PBP, MEAF6, EXO5, MRPS15, MARCKSL1, ZFP69B, ZBTB8A, LOC653160, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SNORD99, SNORD103A, ZBTB8B, LINC01137, PPIEL, ZSCAN20, DNALI1, LAPTM5, CCDC28B, NKAIN1, AKIRIN1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, PTP4A2, SYNC, TSSK3, SESN2, STK40, TMEM222, SNHG3, NT5C1A, FAM167B, MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, THRAP3) 0.408805493024439 237 0.102292073726554 0.846637635822428 15502 0.221486620809843 2 1 1 -7.31285423395599 LTS-018 NA NA NA NA LTS-018 chr1 41012918 43887060 2874143 * c(LOC100129924, NFYC-AS1, SLFNL1-AS1, PPIH, EBNA1BP2, MED8, ERMAP, ZNF684, TMEM125, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, RIMKLA, GUCA2A, GUCA2B, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, NFYC, YBX1, ZNF691, HIVEP3, P3H1, ELOVL1, SLC2A1, TIE1, CCDC30, C1orf50, PPCS, ZMYND12, KCNQ4, RIMS3, CDC20) 0.399800514885039 43 0.0826765703352046 0.898210137179734 2884 0.221892216871086 2 1 1 -7.25995790396497 LTS-018 chr1 43887061 43887675 615 * SZT2 NA 0 NA 0.996 1 NA NA NA NA NA LTS-018 chr1 43887676 44088647 200972 * c(SZT2, PTPRF, HYI) 0.427603181529712 9 0.0288347783838275 1.00827095112957 589 0.218766663053871 2 1 1 -6.87188703922809 LTS-018 chr1 44088648 49511424 5422777 * c(EFCAB14-AS1, KDM4A-AS1, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, LRRC41, KIF2C, TOE1, PLK3, CCDC163, DMBX1, KLF17, KNCN, MOB3C, CCDC24, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, DPH2, CYP4Z1, SLC5A9, FAAH, FOXE3, FOXD2, MAST2, MMACHC, CYP4X1, BEST4, SNORD55, CYP4A22, C1orf228, TCTEX1D4, IPP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MUTYH, NASP, PRDX1, TMEM69, CMPK1, ATP6V0B, NA NA NA NA NA NA NA NA NA LTS-018 LURAP1, SPATA6, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, ATPAF1, ST3GAL3, STIL, SLC6A9, TAL1, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, TMEM53, HECTD3, BEND5, RAD54L, FOXD2-AS1, HPDL, AGBL4, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14) 0.381869529277624 113 0.067763147687932 0.88584666450463 5763 0.226415613733764 2 1 1 -7.62005247105738 LTS-018 NA NA NA NA LTS-018 chr1 49511425 50569824 1058400 * c(ELAVL4, AGBL4) 0 1 NA 0.991939788832983 39 1.28591944032958 3 3 0 -5.76763866608151 LTS-018 chr1 50569825 52980741 2410917 * c(MIR761, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, CC2D1B, EPS15, TTC39A, ZCCHC11, RNF11, C1orf185, NRDC, ORC1, TXNDC12, RAB3B, DMRTA2, PRPF38A, BTF3L4, ZFYVE9) 0.292139029427403 18 0.192141126306423 0.856231687075376 2331 0.227833961454886 2 1 1 -7.15308735124162 LTS-018 chr1 52980742 53074565 93824 * c(ZCCHC11, GPX7) 0.49 1 NA 0.811802868354651 69 0.296616388212419 2 2 0 -5.76464198732964 LTS-018 chr1 53074566 74492667 21418102 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, NEGR1-IT1, ZRANB2-AS2, PATJ, HHLA3, MYSM1, OMA1, LRRC42, LRRIQ3, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CTH, IL23R, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, TCTEX1D1, AK4, SLC35D1, USP24, ITGB3BP, SSBP3, NA NA NA NA NA NA NA NA NA LTS-018 PCSK9, NEGR1, PARS2, ACOT11, SERBP1, FOXD3, ANGPTL3, GPX7, ALG6, FAM151A, FAM159A, IL12RB2, JAK1, JUN, MROH7, LDLRAD1, LEPR, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, ROR1, MRPL37, HOOK1, PDE4B, HSPB11, PGM1, PIN1P1, YIPF1, L1TD1, LEPROT, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, PRKAA2, LRRC40, DEPDC1, NDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, CYB5RL, RPE65, SCP2, DMRTB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SLC1A7, COA7, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, ZYG11B, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, PLPP3, DIRAS3, SRSF11, ZRANB2, TMEM59, DNAJC6) 0.400021883875947 237 0.0789592048612761 0.863687321140428 10838 0.238619940777038 2 1 1 -8.00033030409452 LTS-018 NA NA NA NA LTS-018 chr1 74492668 74506927 14260 * LRRIQ3 NA 0 NA 0.946 1 NA NA NA NA NA LTS-018 chr1 74506928 77098483 2591556 * c(FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.381730315082767 53 0.0950473566176356 0.93677131292781 1540 0.313085819075874 3 2 1 -7.0863541616043 LTS-018 chr1 77098484 89301916 12203433 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ZZZ3, AK5, GNG5, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1 NA NA NA NA NA NA NA NA NA LTS-018 ) 0.380072594192648 69 0.118844949028696 0.871656541200089 4775 0.253103426134987 2 1 1 -7.63075305624282 LTS-018 NA NA NA NA LTS-018 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.413 1 NA NA NA NA NA LTS-018 chr1 89318581 94466528 5147948 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, ABCA4, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, GCLM, ZNF326, BTBD8, GTF2B, DNTTIP2, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.378712980283762 57 0.0840363590901153 0.79794952955804 3701 0.218409033857079 2 1 1 -6.91707018969161 LTS-018 chr1 94466529 99380455 4913927 * c(TMEM56-RWDD3, MIR2682, DPYD-AS1, CNN3, SLC44A3, TMEM56, PLPPR5, DPYD, ALG14, F3, ABCA4, RWDD3, MIR137HG, MIR137, FLJ31662, SNX7, PTBP2, ABCD3, LOC729970, LOC729987, ARHGAP29) 0.353074626570798 29 0.115256695733177 0.91321352559734 1425 0.281219829749596 2 1 1 -7.59065127537656 LTS-018 chr1 99380456 100492235 1111780 * c(LOC100129620, PLPPR5, AGL, SLC35A3, FRRS1, PALMD, PLPPR4) 0.426917213640786 12 0.0474070062588247 0.771052724266829 606 0.169894348947912 2 1 1 -6.75753870715439 LTS-018 chr1 100492236 113638959 13146724 * c(LINC01349, LOC100129138, LINC01160, MIR4256, FAM212B-AS1, VAV3-AS1, LAMTOR5-AS1, CEPT1, VAV3, LAMTOR5, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, NBPF4, SLC30A7, CHIAP2, DBT, FNDC7, SASS6, UBL4B, S1PR1, CELSR2, EXTL2, NTNG1, WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, NA NA NA NA NA NA NA NA NA LTS-018 CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, PGCP1, OVGP1, ATP5F1, DPH5, GPR88, TRMT13, ST7L, PRPF38B, PRMT6, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, MFSD14A, RBM15, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, TAF13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MIR553, VCAM1, WNT2B, WDR77, EPS8L3, DENND2D, CAPZA1, GPR61, PROK1, PSRC1, STRIP1, CDC14A, RTCA, SLC16A4, DNAJA1P5, CD53, LRIG2) 0.381833871798173 171 0.0843268792628985 0.852992019695148 8399 0.261546579246239 2 1 1 -7.39074086054539 LTS-018 NA NA NA NA LTS-018 chr1 113638960 113641239 2280 * LRIG2 NA 0 NA 1.082 1 NA NA NA NA NA LTS-018 chr1 113641240 114123337 482098 * c(MAGI3, LOC643441, LRIG2) 0.397 1 NA 1.12768611295515 108 0.389060909291595 3 3 0 -5.76696152429412 LTS-018 chr1 114123338 114128035 4698 * MAGI3 NA 0 NA 0.878 1 NA NA NA NA NA LTS-018 chr1 114128036 116109420 1981385 * c(AP4B1-AS1, TSPAN2, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, MAGI3, PTPN22, AMPD1, BCL2L15, NGF, NRAS, TRIM33, RSBN1, OLFML3, DCLRE1B, SYCP1, TSHB, CSDE1, SIKE1) 0.348272423646123 43 0.140026112894556 0.837084849613336 2157 0.267690644610465 2 1 1 -6.95291797953348 LTS-018 chr1 116109421 116193882 84462 * VANGL1 NA 0 NA 1.293 1 NA NA NA NA NA LTS-018 chr1 116193883 116311107 117225 * c(VANGL1, CASQ2) 0.323470446658944 18 0.0564821679303977 1.24289126026177 281 0.278238486991127 4 3 1 -6.95843475406623 LTS-018 chr1 116311108 121116733 4805626 * c(MIR942, MIR320B1, SRGAP2D, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HIST2H2BA, NBPF7, ATP1A1, NHLH2, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, FAM72B, TBX15, VTCN1, TRIM45, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.382623618552766 86 0.0886388243179623 0.842835711808852 3516 0.362263105970079 2 1 1 -6.94251539101903 LTS-018 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.780937143649362 59 0.220412545558609 2 NA NA -5.7653558783995 LTS-018 chr1 143912360 144013853 101494 * FAM72D 0.328 1 NA 1.19988121089461 5 0.502627297308851 3 3 0 -5.7667527304168 LTS-018 chr1 144013854 145103859 1090006 * c(NBPF20, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.301788073194574 56 0.0676710531067119 1.1325763448168 537 0.477880685987937 4 3 1 -6.8625857412244 LTS-018 chr1 145103860 145103928 69 * c(NBPF20, SEC22B) 0.204 1 NA 2.24 1 NA NA NA NA NA LTS-018 chr1 145103929 152760557 7656629 * c(C1orf68, LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, LCE4A, NUDT17, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, CA14, LCE5A, NBPF14, LCE2B, GJA5, GJA8, RNF115, RIIAD1, NA NA NA NA NA NA NA NA NA LTS-018 THEM5, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, NOTCH2NL, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, KPRP, CRNN, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, LCE3D, ITGA10, PEX11B, SELENBP1, PRPF3, SEC22B, CHD1L, SETDB1, SV2A, RBM8A) 0.296446410770505 183 0.0904166729275608 1.41240836735914 8568 0.904190573921829 4 3 1 -6.74054462457805 LTS-018 NA NA NA NA LTS-018 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.56 1 NA NA NA NA NA LTS-018 chr1 152760642 152777465 16824 * c(LCE1C, LCE1D, LCE1E) 0.259178943381833 2 0.0212132034355964 2.41261651515069 40 1.16181054520465 20 15 5 -6.73934680378887 LTS-018 chr1 152777466 152777473 8 * LCE1C NA 0 NA 1.454 1 NA NA NA NA NA LTS-018 chr1 152777474 161565408 8787935 * c(MIR190B, MSTO2P, TSTD1, CADM3-AS1, MIR4258, LINC01133, LOC100505666, PMF1-BGLAP, SCAMP3, MIR5187, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, SLAMF6, FCRL1, FCRL3, CKS1B, CLK2, TDRD10, SHE, KLHDC9, OR10J5, DCST2, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, S100A16, ITLN2, CREB3L4, LELP1, DCST1, LRRC71, PYHIN1, SPRR4, NA NA NA NA NA NA NA NA NA LTS-018 TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FCER1A, FCER1G, FCGR2A, FCGR3A, FDPS, KIAA0907, SYT11, SMG5, NCSTN, SNAPIN, RUSC1, ACKR1, ARHGAP30, CFAP126, CFAP45, C1orf43, CHTOP, GBA, GBAP1, OR10J1, USP21, SLC39A1, RUSC1-AS1, C1orf204, LAMTOR2, HDGF, APCS, HSPA6, APOA2, S100A7A, RXFP4, IFI16, OR10R2, FCRL6, LCE1A, LCE1B, LCE1C, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNJ9, KCNJ10, KCNN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 C1orf189, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, LOR, LY9, MIR9-1, SMCP, MEF2D, MNDA, MPZ, ETV3L, OR10J3, LCE6A, MTX1, MUC1, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, NPR1, NTRK1, DCAF8, F11R, ZBTB7B, RRNAD1, UFC1, CD244, PFDN2, PKLR, DPM3, GON4L, GPATCH4, DUSP23, PPOX, MSTO1, KIRREL, YY1AP1, PRCC, UBE2Q1, ITLN1, ASH1L, LENEP, SLC50A1, SLAMF8, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 VANGL2, PBXIP1, S100A14, PRR9, GATAD2B, IGSF9, HCN3, SLAMF7, CADM3, PEX19, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SDHC, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, SLAMF1, INTS3, PCP4L1, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPTA1, SSR2, SCARNA4, SNORA80E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MIR555, MIR92B, THBS3, TPM3, CCT3, USF1, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, OR6N2, OR6K2, NECTIN4, ISG20L2, FCRL5, FCRL4, TAGLN2, TOMM40L, TMEM79, CASQ1, PEA15, B4GALT3, ADAM15, CD84, AQP10, SLAMF9, SH2D2A, PYGO2, CD1A, CD1B, FCGR2C, CD1C, NUP210L, CD1D, CD1E, ARHGEF2, DEDD, CD5L, MEX3A, PIGM, IGSF8, AIM2, ADAMTS4, CD48, SLC25A44, ARHGEF11, UBAP2L, DENND4B, NR1I3) 0.284139876063452 326 0.085313482727314 1.39566063485654 17203 0.553180185314831 4 3 1 -6.7377751945632 LTS-018 NA NA NA NA LTS-018 chr1 161565409 161565497 89 * FCGR2C NA 0 NA 1.082 1 NA NA NA NA NA LTS-018 chr1 161565498 161570518 5021 * FCGR2C NA 0 NA 0.762870718792968 38 0.283564323324188 2 NA NA -5.76447982330242 LTS-018 chr1 161570519 161570541 23 * FCGR2C 0.235 1 NA 3.58 1 NA NA NA NA NA LTS-018 chr1 161570542 172380416 10809875 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-018 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.298292037785511 193 0.0684433059480757 1.35436602290258 7129 0.435293473906242 4 3 1 -6.75428357664319 LTS-018 NA NA NA NA LTS-018 chr1 172380417 172380515 99 * c(DNM3, PIGC) NA 0 NA 1.31 1 NA NA NA NA NA LTS-018 chr1 172380516 176105755 3725240 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.279137117592721 40 0.0992447893097074 1.28509091710387 2267 0.351905586178765 4 3 1 -6.82549694448149 LTS-018 chr1 176105756 176118085 12330 * RFWD2 NA 0 NA 1.633 1 NA NA NA NA NA LTS-018 chr1 176118086 178888052 2769967 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.301013516610686 45 0.0589202079858083 1.45762577699937 1426 0.646847651297487 4 3 1 -6.77047276409564 LTS-018 chr1 178888053 180249307 1361255 * c(LHX4-AS1, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, RALGPS2, QSOX1, TOR3A, SOAT1, NPHS2, LHX4, CEP350, FAM20B) 0.28384255304406 67 0.101253437998261 1.33866767790897 2012 0.570826639496741 4 3 1 -6.73666992079065 LTS-018 chr1 180249308 180757010 507703 * c(MIR3121, ACBD6, XPR1) NA 0 NA 1.51254897449476 74 0.405000797600469 4 NA NA -5.78050164334991 LTS-018 chr1 180757011 180853815 96805 * XPR1 0.185 1 NA 1.15608565495342 73 0.48658217975591 3 3 0 -5.76533541937161 LTS-018 chr1 180853816 183084829 2231014 * c(GM140, STX6, ZNF648, TEDDM1, DHX9, GLUL, LOC284648, MR1, RGSL1, LINC00272, LAMC1, IER5, KIAA1614, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, XPR1) 0.176380123556082 39 0.0692678308355615 1.15793422959877 2047 0.340318687860777 3 3 0 -7.4468935962966 LTS-018 chr1 183084830 183085704 875 * LAMC1 NA 0 NA 1.303 1 NA NA NA NA NA LTS-018 chr1 183085705 183497240 411536 * c(NMNAT2, SMG7-AS1, LAMC1, LAMC2, SMG7) NA 0 NA 1.36479129471896 544 0.345932519094846 4 NA NA -5.76459973338436 LTS-018 chr1 183497241 192154699 8657459 * c(GS1-279B7.1, MIR548F1, RNU6-72P, ARPC5, PRG4, IVNS1ABP, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, BRINP3, APOBEC4, LOC440704, NCF2, PDC, PLA2G4A, SWT1, C1orf27, PTGS2, RNF2, RGS18, TPR, EDEM3, C1orf21, TRMT1L, HMCN1, SMG7) 0.176127730798413 53 0.063022785982336 1.14196612322724 3139 0.337616500789988 3 3 0 -7.6269444886162 LTS-018 chr1 192154700 193222763 1068064 * c(MIR1278, RGS21, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.135167775898939 6 0.0214165045389453 0.976771721175868 566 0.274108418355384 2 2 0 -7.0686038928181 LTS-018 chr1 193222764 200828065 7605302 * c(MIR181A1HG, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFH, CFHR1, CFHR2, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CDC73, CFHR5, DDX59, KIF14) 0.190020397652737 34 0.0639490731537155 1.1208233057032 2753 0.388551313909378 3 3 0 -7.78122876120123 LTS-018 chr1 200828066 200828162 97 * CAMSAP2 NA 0 NA 1.713 1 NA NA NA NA NA LTS-018 chr1 200828163 201828136 999974 * c(MIR1231, MIR5191, CSRP1, KIF21B, CAMSAP2, PHLDA3, TMEM9, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1) 0.180851416382788 33 0.0451150885194877 1.19605381108092 1743 0.277668866980822 3 3 0 -8.32021415882729 LTS-018 chr1 201828137 202155461 327325 * c(TIMM17A, ARL8A, PTPRVP, SHISA4, ELF3, LMOD1, IPO9, PTPN7, RNPEP, GPR37L1) 0.146664959163981 15 0.057718363835174 1.47922392108345 835 0.364662016137662 7 6 1 -7.14459775563789 LTS-018 chr1 202155462 202155530 69 * PTPRVP 0.21 1 NA 0.443 1 NA NA NA NA NA LTS-018 chr1 202155531 205744546 3589016 * c(ZBED6, PCAT6, LRRN2, KDM5B, CHI3L1, CHIT1, SYT2, LINC00628, GOLT1A, ADORA1, LOC148709, PTPRVP, MFSD4A, ELK4, PLEKHA6, NFASC, FMOD, DSTYK, OPTC, LINC00303, LEMD1-AS1, LOC284578, UBE2T, KISS1, TMEM81, NA, MDM4, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CDK18, CYB5R1, PIK3C2B, LAX1, KLHDC8A, ETNK2, PRELP, RABIF, RBBP5, KLHL12, LGR6, REN, MGAT4EP, NUCKS1, SNRPE, SNORA77, CNTN2, LINC01136, BTG2, NA NA NA NA NA NA NA NA NA LTS-018 NUAK2, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, TMEM183A, LEMD1, SOX13, ZC3H11A, TMCC2) 0.184089452540995 117 0.0516244914997268 1.15985657194453 5659 0.32362314515082 3 3 0 -8.11945816700245 LTS-018 NA NA NA NA LTS-018 chr1 205744547 205759213 14667 * c(SLC41A1, RAB29) 0.325 1 NA 1.13333418658999 21 0.195528124879895 3 3 0 -5.76480734365989 LTS-018 chr1 205759214 206579964 820751 * c(SLC26A9, PM20D1, CTSE, SRGAP2, SLC41A1, LOC284581, C1orf186, AVPR1B, SRGAP2C, FAM72A) 0.205661718503582 8 0.0966591027418377 1.13896891928175 510 0.245265186024818 3 3 0 -7.40446207628048 LTS-018 chr1 206579965 206589163 9199 * c(SRGAP2, SRGAP2C) NA 0 NA 1.033 1 NA NA NA NA NA LTS-018 chr1 206589164 211745926 5156763 * c(MIR4260, IL24, CR1, CR1L, CR2, C1orf74, LOC148696, CD55, EIF2D, SRGAP2, SYT14, DIEXF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, G0S2, IL20, PFKFB2, PIGR, PLXNA2, YOD1, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, MIR205HG, TRAF5, C4BPA, C4BPB, C1orf116, TRAF3IP3, RASSF5, FCAMR, DYRK3, LINC00467, FCMR, MAPKAPK2, CD34, IKBKE) 0.227331894371129 92 0.0591719285516676 0.960055234633805 4060 0.28639825331599 2 2 0 -9.01198170886575 LTS-018 chr1 211745927 213277711 1531785 * c(MIR3122, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.229275926388495 38 0.074615600975678 0.904489045727912 1482 0.348348954274368 2 2 0 -7.68263772141597 LTS-018 chr1 213277712 214507595 1229884 * c(LINC00538, RPS6KC1, PROX1, SMYD2) NA 0 NA 0.942162987205036 238 0.154238157214327 3 NA NA -6.34128054333207 LTS-018 chr1 214507596 214557998 50403 * c(SMYD2, PTPN14) 0.401 1 NA 1.38789149528456 81 0.237213394969775 4 4 0 -5.7644379807012 LTS-018 chr1 214557999 219783284 5225286 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, PTPN14, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.344910085177398 36 0.129891245718431 1.27216524251915 1863 0.448839143516294 4 3 1 -6.93991625083792 LTS-018 chr1 219783285 224804181 5020897 * c(MIR320B2, MIR4742, BPNT1, DUSP10, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.343463466326328 54 0.114868107151337 1.0948514300495 3184 0.324920329551765 3 2 1 -6.75370689263544 LTS-018 chr1 224804182 234456023 9651842 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR3620, MIR4666A, MIR4671, MIR4427, MIR5008, LEFTY1, SPHAR, CAPN9, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, AGT, IBA57, EPHX1, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, FAM89A, KCNK1, LBR, ZNF847P, TRIM67, H3F3AP4, TRIM17, EGLN1, MAP10, NA NA NA NA NA NA NA NA NA LTS-018 ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, JMJD4, SRP9, LEFTY2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, WNT3A, HIST3H2A, TMEM63A, URB2) 0.325399907009768 136 0.0827803400270203 1.18338694172536 8201 0.304765343213966 3 2 1 -7.27878755512555 LTS-018 NA NA NA NA LTS-018 chr1 234456024 234458756 2733 * SLC35F3 NA 0 NA 0.751 1 NA NA NA NA NA LTS-018 chr1 234458757 236899015 2440259 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.349477687162849 49 0.0744169285290698 1.11115192548856 2195 0.300563698203887 3 2 1 -6.76374331648181 LTS-018 chr1 236899016 248570481 11671466 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, OR2T8, C1orf229, OR2M1P, OR11L1, NA NA NA NA NA NA NA NA NA LTS-018 OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.329101933088789 174 0.0926152814574601 1.23349723328585 5934 0.526786618100684 4 3 1 -7.13805471038108 LTS-018 NA NA NA NA LTS-018 chr1 248570482 248604490 34009 * character(0) NA 0 NA 0.872 1 NA NA NA NA NA LTS-018 chr1 248604491 248814126 209636 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.401529775471617 7 0.0644382317749775 1.10918686741357 237 0.461188228957315 5 3 2 -6.83028318464077 LTS-018 chr1 248814127 249214134 400008 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) NA 0 NA 1.11892737558583 323 0.221650298653052 3 NA NA -5.76844534053168 LTS-018 chr2 38824 38938 115 * FAM110C 0.456 1 NA 1.17301504807848 3 0.16497272501841 3 3 0 -5.76442463454682 LTS-018 chr2 38939 28974763 28935825 * c(OST4, MIR1301, BRE-AS1, SNORA80B, MIR4261, MIR4263, MIR3125, MIR4262, GTF3C2-AS1, LOC100505716, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PREB, PDIA6, MYCNOS, CENPA, CGREF1, RAB10, ADCY3, YWHAQ, EMILIN1, GPN1, KLHL29, CMPK2, MBOAT2, TMEM18, CIB4, OSR1, TTC32, ZNF513, C2orf50, PQLC3, LINC01105, TCF23, GAREM2, PLB1, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, NA NA NA NA NA NA NA NA NA LTS-018 DNMT3A, DTNB, E2F6, CYS1, KRTCAP3, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, MYT1L, LPIN1, PUM2, FOSL2, NTSR2, ATP6V1C2, RNASEH1, FTH1P3, IFT172, GCKR, SH3YL1, FAM150B, DNAJC5G, IAH1, FLJ33534, TRIB2, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, HPCAL1, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNK3, KCNS3, KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LOC400940, LINC00487, LINC00954, MATN3, MPV17, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, ATRAID, NBAS, SF3B6, CPSF3, ACP1, SNTG2, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, PPP1CB, ASXL2, ADI1, ALLC, DPYSL5, TRIM54, KIDINS220, WDR35, RDH14, AGBL5, LDAH, RPS7, RRM2, SDC1, RBKS, FAM110C, HS1BP3, LOC645949, FNDC4, FAM228A, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, MYT1L-AS1, UCN, VSNL1, SLC30A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PXDN, COLEC11, CAD, CENPO, CCDC121, SMC6, NOL10, WDCP, FAM49A, C2orf16, ZNF512, KLF11, ABHD1, SELENOI, NCOA1, ASAP2, SLC5A6, EIF2B4, TAF1B, RSAD2, ITGB1BP1, DRC1, NT5C1B, OTOF, ROCK2, TP53I3, MRPL33, BRE, GREB1, LAPTM4A, RNF144A, SNX17, SUPT7L) 0.331160950966024 324 0.0920803088188689 1.02060218039455 16081 0.256900978673118 3 2 1 -7.71032012122659 LTS-018 NA NA NA NA LTS-018 chr2 28974764 29075469 100706 * c(SPDYA, PPP1CB, TRMT61B) 0.482829710849711 2 0.00353553390593274 0.737424944357734 175 0.142754602903886 2 1 1 -18.6481372442775 LTS-018 chr2 29075470 29083957 8488 * TRMT61B NA 0 NA 1.155 1 NA NA NA NA NA LTS-018 chr2 29083958 30865545 1781588 * c(FAM179A, WDR43, ALK, LCLAT1, SNORD53, C2orf71, YPEL5, TRMT61B, SNORD92, CLIP4, LBH) 0.337303635112601 33 0.0461860942603973 1.00936661456446 1025 0.224600920214679 3 2 1 -7.04306338796741 LTS-018 chr2 30865546 30865666 121 * LCLAT1 NA 0 NA 0.094 1 NA NA NA NA NA LTS-018 chr2 30865667 30866986 1320 * LCLAT1 0.454754902256779 2 0.0643467170879758 0.503944947555067 40 0.318498959463743 2 1 1 -6.85255368792906 LTS-018 chr2 30866987 36778175 5911189 * c(LOC100271832, LOC100288911, MIR4765, MYADML, LCLAT1, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.34636138385315 33 0.0774797627536613 1.03856958447279 2490 0.261616806098992 3 2 1 -6.87093898454343 LTS-018 chr2 36778176 40339920 3561745 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL, FEZ2) 0.299414651152384 38 0.124965098968355 0.961448469062101 3069 0.274735482419283 3 2 1 -7.2895743706105 LTS-018 chr2 40339921 40339986 66 * c(SLC8A1-AS1, SLC8A1) 0.335 1 NA 1.81 1 NA NA NA NA NA LTS-018 chr2 40339987 56613333 16273347 * c(MIR216B, SLC8A1-AS1, LINC01126, LINC01119, MIR3682, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, OXER1, KCNG3, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, ASB3, DYNC2LI1, PIGF, NA NA NA NA NA NA NA NA NA LTS-018 PPM1B, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, RPS27A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, ACYP2) 0.340319365354701 160 0.0708428633063807 1.01215129492308 7620 0.565669004379942 3 2 1 -6.9520718346429 LTS-018 NA NA NA NA LTS-018 chr2 58275582 61010340 2734759 * c(MIR4432, LINC01122, BCL11A, FANCL, PAPOLG, VRK2) 0.354836084440096 8 0.210283312292182 0.808480811387153 386 0.280952401270796 2 1 1 -6.80550990615689 LTS-018 chr2 61010341 61027891 17551 * PAPOLG 0.487 1 NA 0.769956906211397 105 0.229813599016769 2 2 0 -5.76463907497482 LTS-018 chr2 61027892 74448655 13420764 * c(SNORA36C, SNORA70B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, BOLA3-AS1, MIR4434, MIR4778, MIR5192, ACTR2, MPHOSPH10, SMYD5, C1D, CCT7, CCT4, STAMBP, B3GNT2, MTHFD2, PROKR1, SNRNP27, TEX261, WDR92, ADD2, AHSA2, COMMD1, FBXO41, PUS10, LINC00309, ASPRV1, CLEC4F, DGUOK, EGR4, ALMS1P1, TET3, GKN2, APLF, TMEM17, SPRED2, EMX1, AAK1, CEP68, EXOC6B, EHBP1, VAX2, CNRIP1, RAB11FIP5, GFPT1, NFU1, BMP10, NA NA NA NA NA NA NA NA NA LTS-018 ZNF638, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, FIGLA, NOTO, C2orf78, BOLA3, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, MXD1, MDH1, MEIS1, OTX1, CD207, PCBP1, TPRKB, WDPCP, PCYOX1, VPS54, PEX13, ATP6V1B1, PLEK, ETAA1, AFTPH, C2orf42, MOB1A, PPP3R1, FBXO48, NAGK, GKN1, CYP26B1, PNO1, PELI1, SLC4A5, RAB1A, REL, GMCL1, LOC644838, PAPOLG, SLC1A4, SNRPG, SPR, TGFA, TIA1, ACTG2, MEIS1-AS3, UGP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 XPO1, ALMS1, OR7E91P, ANKRD53, DYSF, FAM161A, ANTXR1, PRADC1, DUSP11, KIAA1841, MCEE, FAM136A, NAT8, SFXN5, USP34, SERTAD2, ARHGAP25) 0.420392683224342 208 0.0797843373235798 0.767736644621189 9510 0.228416620745389 2 1 1 -6.93772095903985 LTS-018 NA NA NA NA LTS-018 chr2 74448656 74448672 17 * SLC4A5 0.482 1 NA 2.175 1 NA NA NA NA NA LTS-018 chr2 74448673 74908333 459661 * c(DCTN1-AS1, INO80B-WBP1, SEMA4F, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DOK1, WBP1, HTRA2, TLX2, C2orf81, AUP1, SLC4A5, RTKN, TTC31, MOGS, INO80B, WDR54, LOXL3, PCGF1, CCDC142, LBX2) 0.168175204923038 9 0.212626432975771 0.771271892268448 1607 0.260711845266773 2 2 0 -6.75170513108438 LTS-018 chr2 74908334 75061475 153142 * c(SEMA4F, HK2) 0.466 1 NA 0.803310394510096 25 0.132408773626725 2 2 0 -5.76479053492797 LTS-018 chr2 75061476 75196614 135139 * c(HK2, POLE4) 0.464777259191657 9 0.0280713376952364 0.76269521992233 184 0.173818479551088 2 1 1 -7.710038806432 LTS-018 chr2 75196615 80846382 5649768 * c(SNAR-H, MIR4264, MIR5000, REG3G, CTNNA2, LRRTM1, REG3A, POLE4, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.459252079921326 11 0.0453190708401903 0.856865936788114 735 0.21685609896506 2 1 1 -7.40271322118381 LTS-018 chr2 80846383 87085504 6239122 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.422966266573487 41 0.0637949458966086 0.77055008398317 3155 0.171625232715763 2 1 1 -6.87058293804626 LTS-018 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.566 1 NA NA NA NA NA LTS-018 chr2 87092741 87424340 331600 * c(ANAPC1P1, LOC285074, RMND5A) 0.390686733312363 2 0.0183847763108503 0.547679032314031 114 0.221613290731365 2 1 1 -8.90781869496299 LTS-018 chr2 87424341 90260036 2835696 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.372191440393216 36 0.0775024833191487 0.842050578142918 917 0.382998499201043 2 1 1 -7.04431658367911 LTS-018 chr2 91766520 91944161 177642 * LOC654342 0.406638870920507 25 0.0912423512776094 1.13293129647932 95 0.460579899336708 4 2 2 -6.77898281864809 LTS-018 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.33704261090771 7 0.209919825965375 4 NA NA -5.76454988136992 LTS-018 chr2 95537183 95537622 440 * c(TEKT4, LOC442028) 0.369 1 NA 0.808766553776254 9 0.179331242243075 2 2 0 -5.76441204916378 LTS-018 chr2 95537623 101635557 6097935 * c(MIR3127, ACTR1B, TXNDC9, ARID5A, TBC1D8, MGAT4A, CNGA3, NMS, LYG1, MITD1, TRIM43, COX5B, TEKT4, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, LONRF2, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, STARD7-AS1, KCNIP3, KIAA1211L, INPP4A, ANKRD36, AFF3, MAL, ASTL, LOC442028, NPAS2, COA5, FAHD2A, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, SEMA4C, TMEM127, KANSL3, STARD7, NA NA NA NA NA NA NA NA NA LTS-018 ANKRD36B, RPL31, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, PDCL3, TSGA10, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1, CHST10, EIF5B) 0.41206074546927 102 0.0836453719165597 0.79768383368397 5970 0.190871186531445 2 1 1 -6.74975048836633 LTS-018 NA NA NA NA LTS-018 chr2 101635558 101635636 79 * c(TBC1D8, RPL31) NA 0 NA 1.085 1 NA NA NA NA NA LTS-018 chr2 101635637 103057668 1422032 * c(MIR4772, MIR5696, TBC1D8, CREG2, RNF149, IL1R1, CNOT11, RPL31, SNORD89, RFX8, IL1R2, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4) 0.362954026483109 29 0.0749702732549454 1.08947097646729 1139 0.321260693155847 3 2 1 -6.73320237580582 LTS-018 chr2 103057669 103089998 32330 * c(SLC9A4, IL18RAP) 0 1 NA 1.15858775745084 47 1.27526065428022 3 3 0 -5.7644583517083 LTS-018 chr2 103089999 105707957 2617959 * c(LOC100287010, LINC01158, TMEM182, LINC01102, LINC01114, SLC9A4, POU3F3, MRPS9, SLC9A2, MFSD9) 0.217969984943669 12 0.170952944083771 1.12529888588208 596 0.453098778370584 3 3 0 -7.0194062130577 LTS-018 chr2 105707958 105713697 5740 * MRPS9 0.333 1 NA 1.02349560431712 13 0.196653182936291 3 3 0 -5.76473491398988 LTS-018 chr2 105713698 137852726 32139029 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, BCL2L11, FAR2P2, SH3RF3-AS1, MIR663B, MIR4265, MIR4267, MIR4266, LOC100499194, MIR3679, LOC100507334, LOC100507600, MIR4783, MIR4782, MIR4784, ACTR3, MERTK, MAP3K2, EDAR, RABL2A, GPR45, TUBA3E, TUBA3D, LYPD1, RPL23AP7, CNTNAP5, FBLN7, ACMSD, FAM168B, C2orf76, TMEM37, TTL, CKAP2L, CBWD2, LOC150776, WTH3DI, LINC01106, SEPT10, SULT1C2P1, DARS, DBI, CCDC138, C1QL2, FOXD4L1, NA NA NA NA NA NA NA NA NA LTS-018 CFAP221, EN1, AMER3, LINC00116, ERCC3, FHL2, RAB3GAP1, UBXN4, CLASP1, R3HDM1, PSD4, NIFK-AS1, PTPN18, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, LOC285000, MED15P9, PLGLA, RGPD4, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, SH3RF3, GPR148, IL1A, IL1B, IL1RN, INHBB, WASH2P, ZC3H6, DPP10-AS1, LOC389033, LINC01120, LCT, LIMS1, FLJ42351, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LINC01191, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 FAR2P1, LOC440910, SULT1C3, POTEE, MYO7B, NPHP1, ARHGEF4, INSIG2, MIR4435-2HG, POLR2D, CCDC93, PLEKHB2, STEAP3, ACOXL, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, IL36G, UGGT1, DPP10, EPB41L5, PTPN4, RALB, RANBP2, SLC5A7, SCTR, ANAPC1, MRPS9, SOWAHC, POTEI, CFC1B, RGPD3, POTEJ, MZT2A, FAM138B, PAX8-AS1, SLC20A1, SULT1C2, BUB1, TSN, RGPD8, POTEF, RGPD4-AS1, PAX8, MALL, CXCR4, C2orf49, TMEM185B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SAP130, MZT2B, MAP3K19, UXS1, SLC35F5, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, SFT2D3, TMEM87B, LINC01101, MARCO, DDX18, CCNT2, CCDC74A, CCDC74B, IMP4, TGFBRAP1, HS6ST1, GCC2) 0.342818067969769 299 0.108262965090144 1.09385800945576 13912 0.392853512446313 3 2 1 -6.76073013669736 LTS-018 NA NA NA NA LTS-018 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.488 1 NA NA NA NA NA LTS-018 chr2 137872656 139330605 1457950 * c(HNMT, SPOPL, THSD7B) 0.3619121151369 13 0.0585311663637197 1.2284656994565 423 0.359146334036562 3 2 1 -6.83337208426843 LTS-018 chr2 139330606 141816476 2485871 * c(NXPH2, SPOPL, LRP1B, YY1P2) 0.399913527481731 8 0.0476737423985753 1.00930761178523 492 0.315268261658858 3 2 1 -7.13589788717393 LTS-018 chr2 141816477 142356758 540282 * LRP1B 0.0415316797007336 2 0.108894444302728 0.674119586917256 39 0.312263857337333 2 2 0 -7.23739663651132 LTS-018 chr2 142356759 142567785 211027 * LRP1B NA 0 NA 1.454 1 NA NA NA NA NA LTS-018 chr2 142567786 158114268 15546483 * c(LOC100144595, ZEB2-AS1, MIR4773-1, MIR4773-2, STAM2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, EPC2, ARL5A, MMADHC, GPD2, RBM43, KCNJ3, KIF5C, RND3, TEX41, NEB, NR4A2, ORC4, LRP1B, RIF1, PRPF40A, MBD5, ARHGAP15, RPRM, TNFAIP6, PABPC1P2, CACNB4, GTDC1, KYNU, NMI, ACVR2A, ZEB2) 0.359724791499759 75 0.0861445820061193 1.10184443814425 4303 0.276586515913573 3 2 1 -6.75626970704944 LTS-018 chr2 158114269 159215064 1100796 * c(GALNT5, ACVR1C, CCDC148, UPP2, CCDC148-AS1, ERMN, ACVR1, CYTIP) 0.417959629827195 4 0.0619946234227883 0.953687831786383 621 0.225573351454456 2 1 1 -7.13702678769425 LTS-018 chr2 159215065 159222448 7384 * CCDC148 NA 0 NA 1.111 1 NA NA NA NA NA LTS-018 chr2 159222449 165539274 6316826 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, CCDC148, WDSUB1, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, GRB14, BAZ2B, ITGB6, LY75, FIGN, SLC4A10, RBMS1, IFIH1, MARCH7, PKP4, TANC1, KCNH7, DAPL1, CD302) 0.331668616596622 43 0.103268280527044 1.09232931091174 2981 0.294456292597455 3 2 1 -6.79254776620093 LTS-018 chr2 165539275 165542581 3307 * COBLL1 NA 0 NA 1.66418059519656 67 0.572317510153905 5 NA NA -5.76441017836806 LTS-018 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.238 1 NA NA NA NA NA LTS-018 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.328796618840358 46 0.124403325677465 1.12105297815521 3387 0.420482503482645 3 2 1 -6.79626184316683 LTS-018 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.881 1 NA NA NA NA NA LTS-018 chr2 170366321 183948321 13582001 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, NA NA NA NA NA NA NA NA NA LTS-018 HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.359554282607981 249 0.0856760562290303 1.06587499055131 11335 0.275797646858526 3 2 1 -6.77652170652626 LTS-018 NA NA NA NA LTS-018 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.18 1 NA NA NA NA NA LTS-018 chr2 183951766 191064859 7113094 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, MSTN, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, C2orf88, ZNF804A, ORMDL1) 0.325766224362868 38 0.150159668457594 1.14251880324815 3042 0.579817067395473 3 2 1 -6.80294324954677 LTS-018 chr2 191064860 203817270 12752411 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, NA NA NA NA NA NA NA NA NA LTS-018 CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.347382168600704 138 0.100660805152024 1.03076500776913 7849 0.280371323060655 3 2 1 -7.01420393902066 LTS-018 NA NA NA NA LTS-018 chr2 203817271 230020705 26203435 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, NA NA NA NA NA NA NA NA NA LTS-018 CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, EEF1B2, PIKFYVE, LOC200726, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, GMPPA, AGFG1, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, INO80D, PID1, ANKZF1, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, CYP20A1, PTH2R, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, RAPH1, NBEAL1, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 FAM134A, GLB1L, SPAG16, CHPF, CARF, NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, CD28, TTLL4) 0.348365079419845 258 0.0988530732033265 1.10211606116041 16857 0.335196259781575 3 2 1 -6.77398334076625 LTS-018 NA NA NA NA LTS-018 chr2 230020706 230092653 71948 * PID1 NA 0 NA 0.812 1 NA NA NA NA NA LTS-018 chr2 230092654 237395443 7302790 * c(LOC100286922, MIR1471, MIR4777, ARL4C, NMUR1, SP140, CHRND, CHRNG, AGAP1, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, GBX2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, ASB18, DNAJB3, NCL, NEU2, NPPC, PDE6D, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, NA NA NA NA NA NA NA NA NA LTS-018 UGT1A3, PID1, ATG16L1, USP40, HJURP, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, IQCA1, ARMC9, EFHD1, ITM2C, DGKD, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.352084743222222 135 0.0699969658980761 1.04803474326982 5902 0.307058166553794 3 2 1 -6.81258297221452 LTS-018 NA NA NA NA LTS-018 chr2 237395444 237489904 94461 * c(ACKR3, IQCA1) 0.369 1 NA 1.04527502178477 57 0.269347502434437 3 3 0 -5.76561896547179 LTS-018 chr2 237489905 242842568 5352664 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, STK25, COPS8, CAPN10, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, PRLH, THAP4, ANKMY1, PDCD1, SCLY, ASB1, NA NA NA NA NA NA NA NA NA LTS-018 KIF1A, PPP1R7, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, D2HGDH, MLPH, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.336458208069855 208 0.0745542875188249 1.04576778770439 6304 0.560574266196961 3 2 1 -6.82972341246698 LTS-018 NA NA NA NA LTS-018 chr2 242842569 243037218 194650 * LOC728323 NA 0 NA 1.06837536986373 15 0.210239206166509 3 NA NA -5.76521749796974 LTS-018 chr3 239351 418156 178806 * CHL1 0.322 1 NA 1.33650925862408 69 0.186140908363559 4 4 0 -5.76729408334194 LTS-018 chr3 418157 5260445 4842289 * c(EGOT, BHLHE40-AS1, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.306128761126777 37 0.123776771605941 1.31778500086614 1612 0.341219768343143 4 3 1 -6.79382938960292 LTS-018 chr3 5260446 5292054 31609 * c(MIR4790, EDEM1) NA 0 NA 1.28284161233028 29 0.222097873734175 4 NA NA -5.76637552726483 LTS-018 chr3 6814394 6903297 88904 * GRM7 0.376 1 NA 0.821380866398523 27 0.155073468481171 2 2 0 -5.76650892706809 LTS-018 chr3 6903298 15045437 8142140 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, CCDC174, GHRL, PPARG, SETD5, NA NA NA NA NA NA NA NA NA LTS-018 TMEM40, EMC3, BRK1, RAD18, RAF1, RPL32, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, CAV3, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.407449879333792 181 0.0821551949600989 0.808046814319936 6882 0.213334417903165 2 1 1 -6.78547278692642 LTS-018 NA NA NA NA LTS-018 chr3 15045438 15855878 810441 * c(MIR4270, SH3BP5-AS1, METTL6, ANKRD28, CAPN7, HACL1, COL6A4P1, RBSN, MRPS25, BTD, NR2C2, COLQ, EAF1, SH3BP5) 0.406736216179708 19 0.114068718387733 0.535415896082861 1240 0.14975149218357 1 1 0 -8.17231961097384 LTS-018 chr3 15855879 15900830 44952 * ANKRD28 NA 0 NA 0.721 1 NA NA NA NA NA LTS-018 chr3 15900831 49866584 33965754 * c(ACVR2B-AS1, NRADDP, LOC100132146, BSN-AS2, PDCD6IP, PRSS46, MIR1226, MIR711, MIR4271, MIR3714, KRBOX1, MIR4793, MIR4791, MIR548AC, MIR4443, MIR4792, MIR4442, MIR5193, SNRK-AS1, SGO1-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, NME6, CTDSPL, EIF1B, TRAIP, ARIH2, CRTAP, CXCR6, CSPG5, ARPP21, CCR9, USP19, WDR6, CMTM7, TREX1, SCN11A, OSBPL10, ZNF501, LRRC3B, GALNT15, CCR1, CCR3, CCR4, CCR5, CCR8, ACKR2, NA NA NA NA NA NA NA NA NA LTS-018 COL7A1, KCNH8, LYZL4, KLHL40, TRIM71, TMEM42, CTNNB1, SGO1, PP2D1, EFHB, CCDC12, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, CX3CR1, CYP8B1, DAG1, DAZL, XIRP1, CELSR3, TTC21A, KLHDC8B, STT3B, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, CLASP2, GPD1L, RFTN1, NBEAL2, PLCL2, ANKRD28, KLHL18, LARS2, ZNF620, FBXL2, CNOT10, TMEM158, NDUFAF3, ALS2CL, TMIE, MYRIP, PTPN23, HIGD1A, SUSD5, GLB1, RBMS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 AMT, GOLGA4, XCR1, NKIRAS1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, KIF9-AS1, DPH3, GPX1, SETD2, PRSS50, GMPPB, ACAA1, APEH, CCDC36, LOC339862, C3orf35, GADL1, PRSS42, ZNF860, ZNF445, IMPDH2, ITGA9, TOPAZ1, C3orf62, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, LAMB2, VENTXP7, RPSA, LTF, MIR128-2, MIR138-1, MIR191, MIR26A1, MAP4, MLH1, MOBP, EIF1B-AS1, TMEM89, MST1, MYD88, MYL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NKTR, MIR425, VILL, ABHD5, DYNC1LI1, SS18L2, SHISA5, ZDHHC3, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLCD1, PLXNB1, LZTFL1, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, CMTM6, SLC25A38, ULK4, OXSM, ANO10, DALRD3, PRKAR2A, NGLY1, ZKSCAN7, KIF15, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, QARS, RAB5A, RARB, SNORA62, RPL15, SATB1, SCN5A, SCN10A, RNF123, KIF9, AZI2, TMPPE, LIMD1-AS1, THRB-AS1, LINC00693, SPINK8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, SLC26A6, SMARCC1, STAC, MIR563, MIR564, TCTA, TDGF1, TGM4, TGFBR2, THRB, CLEC3B, TOP2B, FAM198A, CCR2, UBA7, UBE2E1, UBE2E2, UBP1, USP4, UQCRC1, VIPR1, ZNF35, SLC25A20, LRRC2, FYCO1, CCDC51, ZNF385D, CAMP, EOMES, RTP3, LRRC2-AS1, ATRIP, NICN1, POMGNT2, DCLK3, CCK, KAT2B, BSN, LIMD1, UCN2, CCRL2, RPL14, SEC22C, ZNF502, LRRFIP2, OXNAD1, ZBTB47, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ACVR2B, SLC22A14, SLC22A13, SLC4A7, ENTPD3, TBC1D5, IP6K1, EPM2AIP1, TRANK1, CDC25A, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.409215705268233 448 0.0830134580366614 0.800118658075919 24439 0.330340039173768 2 1 1 -6.76115718808999 LTS-018 NA NA NA NA LTS-018 chr3 49866585 49878395 11811 * TRAIP 0.344 1 NA 0.815848516359072 33 0.204015266994082 2 2 0 -5.7645082542926 LTS-018 chr3 49878396 50230780 352385 * c(RBM5-AS1, RBM6, RBM5, TRAIP, GNAT1, MST1R, SEMA3F, CAMKV, MON1A) 0.345750298925468 12 0.206337102819633 0.815544245173721 771 0.27671141019325 2 1 1 -6.82387352314698 LTS-018 chr3 50230781 56592860 6362080 * c(SNORD19B, LINC00696, PARP3, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, CACNA2D3-AS1, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, GNAI2, GNAT1, CCDC66, SPCS1, GRM2, RBM15B, HYAL1, ITIH1, ITIH3, ITIH4, TMEM110, IQCF2, IQCF5, MUSTN1, IQCF3, MIRLET7G, NA NA NA NA NA NA NA NA NA LTS-018 MIR135A1, IQCF6, SMIM4, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, TNNC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, ESRG, WDR82, BAP1, HYAL3, ABHD14B, HYAL2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1) 0.30907172859129 120 0.0486095747389598 1.05117145191964 7594 0.241573169164382 3 2 1 -7.49072798109032 LTS-018 NA NA NA NA LTS-018 chr3 56592861 58572832 1979972 * c(ARHGEF3-AS1, RPP14, FAM107A, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.324129933501185 78 0.099077964537747 1.0005348747111 2835 0.266005358902625 3 2 1 -6.94278138430103 LTS-018 chr3 58572833 58572838 6 * FAM107A NA 0 NA 1.365 1 NA NA NA NA NA LTS-018 chr3 58572839 67546445 8973607 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.311673019974502 51 0.0946479089397471 1.10714292914237 2526 0.472248421956582 3 2 1 -6.91956704425021 LTS-018 chr3 67546446 67548641 2196 * SUCLG2 NA 0 NA 0.774 1 NA NA NA NA NA LTS-018 chr3 67548642 75679977 8131336 * c(MIR1284, MIR1324, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, FAM86DP, TMF1, GXYLT2, SUCLG2, UBA3) 0.281992880756314 34 0.0978530173907668 1.03621274088019 2190 0.333300303045899 3 2 1 -7.2278556716458 LTS-018 chr3 75679978 75679988 11 * MIR1324 0.332 1 NA 1.622 1 NA NA NA NA NA LTS-018 chr3 75679989 75714337 34349 * MIR1324 0.272105024713144 5 0.0454004405264971 1.39108265973622 9 0.265786150462694 4 3 1 -6.81484558546376 LTS-018 chr3 75714338 75714345 8 * character(0) 0.312 1 NA 2.875 1 NA NA NA NA NA LTS-018 chr3 75714346 75787145 72800 * ZNF717 0.33651627478659 128 0.0943325861567657 1.4671819383493 254 0.806907983780681 6 4 2 -6.75146634898473 LTS-018 chr3 75787146 75787159 14 * ZNF717 0.398 1 NA 1.008 1 NA NA NA NA NA LTS-018 chr3 75787160 88108724 12321565 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ROBO1, ROBO2, CGGBP1) 0.331542754846168 68 0.0984895351932438 1.10635833923296 1325 0.462643754903742 3 2 1 -6.80834196342451 LTS-018 chr3 88108725 88135502 26778 * CGGBP1 NA 0 NA 1.425 1 NA NA NA NA NA LTS-018 chr3 88135503 90250226 2114724 * c(EPHA3, C3orf38, ZNF654, CGGBP1) 0.41542161217863 12 0.132314020421118 1.36053109702278 387 0.359423430241302 4 2 2 -6.73841296337077 LTS-018 chr3 90250227 90283666 33440 * character(0) NA 0 NA 1.37580797127556 24 0.344493789515127 4 NA NA -5.76441053890033 LTS-018 chr3 93591838 93593119 1282 * PROS1 0.48 1 NA 1.36602497373992 25 0.55235494928533 4 4 0 -5.76441032456241 LTS-018 chr3 93593120 97583230 3990111 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, LINC00879, EPHA6, STX19, PROS1, NSUN3, ARL6) 0.413617241664553 8 0.0626851543144673 1.40530633871989 581 0.318138133480722 4 2 2 -6.76529985365208 LTS-018 chr3 97583231 97583236 6 * CRYBG3 NA 0 NA 1.263 1 NA NA NA NA NA LTS-018 chr3 97583237 107520084 9936848 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LOC152225, GABRR3, ALCAM, ABI3BP, OR5K1, OR5H1, ZBTB11, GPR15, PDCL3P4, DUBR, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, BBX, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, MIR548A3, OR5H6, OR5H2, CEP97, OR5AC2, CMSS1, CCDC54, MINA, ADGRG7, NA NA NA NA NA NA NA NA NA LTS-018 CBLB, NXPE3, TOMM70) 0.42594153330794 20 0.14350480461423 1.29843421619242 3617 0.352524563065161 4 2 2 -6.89785520934606 LTS-018 NA NA NA NA LTS-018 chr3 107520085 107524173 4089 * BBX NA 0 NA 2.024 1 NA NA NA NA NA LTS-018 chr3 107524174 107529925 5752 * BBX 0.352236650041769 2 0.0622253967444162 1.97845971523949 123 0.408964140073658 6 4 2 -6.73359839495837 LTS-018 chr3 107529926 107530124 199 * BBX NA 0 NA 1.414 1 NA NA NA NA NA LTS-018 chr3 107530125 111694183 4164059 * c(PVRL3-AS1, CD96, HHLA2, LINC00635, DPPA2, MYH15, PLCXD2, NECTIN3, MORC1, LINC00636, FLJ22763, LINC01205, TRAT1, IFT57, DPPA4, BBX, KIAA1524, LINC00488, ZBED2, RETNLB, PHLDB2, CD47, GUCA1C, DZIP3) 0.409824405463092 67 0.125937721968295 1.36841274752145 1944 0.609952576542582 4 2 2 -6.74317364655811 LTS-018 chr3 111694184 111694355 172 * PHLDB2 0.441 1 NA 0.827029838518503 5 0.153193668276466 2 2 0 -5.76441632177668 LTS-018 chr3 111694356 113955965 2261610 * c(MIR4446, CFAP44-AS1, CD200R1, CCDC80, BTLA, SPICE1, DRD3, USF3, ZDHHC23, GCSAM, NEPRO, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, CD200, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, ABHD10, CFAP44, CCDC191, ATG3, MIR567, ZNF80, C3orf52, QTRT2, NAA50, PHLDB2, BOC) 0.458233686912909 71 0.0441774772591407 1.34414637989641 3003 0.338306634764125 4 2 2 -7.0447672871666 LTS-018 chr3 113955966 114070818 114853 * c(ZBTB20-AS1, TIGIT, ZBTB20, MIR568, ZNF80) 0.376213509823314 5 0.0685332036315245 1.05725386201025 152 0.508866974531908 3 2 1 -6.75196254886195 LTS-018 chr3 114070819 114099038 28220 * c(ZBTB20-AS1, ZBTB20) NA 0 NA 1.449 1 NA NA NA NA NA LTS-018 chr3 114099039 116163927 2064889 * c(ZBTB20-AS1, MIR4796, GAP43, ZBTB20, LSAMP) 0.462836767261266 3 0.01670329308849 1.33747729312512 136 0.379786362876572 4 2 2 -8.78292294320288 LTS-018 chr3 116163928 116164002 75 * LSAMP NA 0 NA 0.37 1 NA NA NA NA NA LTS-018 chr3 116164003 116728252 564250 * c(TUSC7, LSAMP) 0.437 1 NA 0.30913256888016 44 0.16891332828872 0 0 0 -7.02219819538515 LTS-018 chr3 117715910 129232973 11517064 * c(FAM86JP, LOC100129550, MIR548I1, IGSF11-AS1, MYLK-AS1, ISY1-RAB43, COX17, MIR5002, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, POLQ, ALDH1L1, PDIA5, ADCY5, FSTL1, MGLL, TXNRD3, OSBPL11, LRRC58, CCDC58, TPRA1, UROC1, RPL32P3, ADPRH, CSTA, DTX3L, ROPN1B, C3orf22, IGSF11, C3orf30, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, ALG1L, HACD2, COPG1, LINC01565, NUP210P1, GATA2, FAM162A, SEC22A, GOLGB1, GP9, DNAJB8-AS1, RABL3, NA NA NA NA NA NA NA NA NA LTS-018 ILDR1, ACAD9, KLF15, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, RAB43, H1FX-AS1, CFAP100, ITGB5, KPNA1, MIR198, MCM2, MYLK, NDUFB4, ARGFX, PODXL2, TIMMDC1, PLA1A, FBXO40, PLXNA1, SEMA5B, WDR5B, PARP14, ROPN1, SLC41A3, TMEM39A, IFT122, EAF2, MUC13, HMCES, POGLUT1, ISY1, HEG1, KIAA1257, ARHGAP31, EEFSEC, RPN1, POPDC2, TXNRD3NB, CCDC14, LOC653712, SLC15A2, SNORA7B, UPK1B, UMPS, CNBP, ZNF148, RAB7A, ZXDC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 HSPBAP1, EFCC1, ABTB1, PARP9, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, LOC90246, EFCAB12, CD80, CD86, STXBP5L, IQCB1) 0.448810600104389 289 0.0753451889064556 1.3516298493636 11122 0.374824516062711 4 2 2 -6.8059841984829 LTS-018 NA NA NA NA LTS-018 chr3 129232974 130449222 1216249 * c(TMCC1-AS1, COL6A6, H1FOO, TMCC1, PLXND1, COL6A5, PIK3R4, IFT122, RHO, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.446432408597434 33 0.108295995896768 1.41521432352922 1171 0.342034127829243 4 2 2 -6.75885803847174 LTS-018 chr3 130449223 130893850 444628 * c(ATP2C1, ASTE1, PIK3R4, NEK11) 0 1 NA 1.38868041692519 349 0.515068978564277 4 4 0 -5.76447078826352 LTS-018 chr3 130893851 132207824 1313974 * c(MIR5704, MRPL3, CPNE4, NUDT16, NUDT16P1, DNAJC13, LOC339874, ACPP, SNORA58, NEK11) 0.309842173822586 12 0.196334343003012 1.43124707445446 638 0.48264732167701 4 3 1 -6.74466759766802 LTS-018 chr3 132207825 132211285 3461 * DNAJC13 0.414 1 NA 1.44394132006448 9 0.225346461649119 4 4 0 -5.76449963092193 LTS-018 chr3 132211286 135914476 3703191 * c(NPHP3-ACAD11, MIR4788, TOPBP1, EPHB1, DNAJC13, ANAPC13, NPHP3, KY, NPHP3-AS1, AMOTL2, ACKR4, RAB6B, MSL2, PPP2R3A, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, TF, UBA5, C3orf36, CEP63, ACAD11, BFSP2) 0.460863818854782 23 0.027465609110203 1.41307916119895 2225 0.323258306921408 4 2 2 -7.58660947979832 LTS-018 chr3 135914477 135977904 63428 * c(PCCB, MSL2) 0.31 1 NA 1.55346583500032 34 0.249264552815984 5 5 0 -5.76754247256203 LTS-018 chr3 135977905 138409830 2431926 * c(STAG1, DZIP1L, MRAS, ARMC8, NME9, NCK1, PCCB, A4GNT, DBR1, CLDN18, PIK3CB, IL20RB, FAIM, CEP70, SLC35G2, ESYT3, SOX14) 0.223658921831924 9 0.236129201921321 1.38120230304914 1643 0.439820039125851 4 3 1 -6.77864263934805 LTS-018 chr3 138409831 138665796 255966 * c(PIK3CB, FOXL2) 0.447 1 NA 1.35124471586295 117 0.292076483337958 4 4 0 -5.76509892258907 LTS-018 chr3 138665797 140685827 2020031 * c(PISRT1, TRIM42, NMNAT3, PRR23B, PRR23C, FOXL2NB, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, COPB2) 0.438361357011551 21 0.105590944777702 1.41622666803266 841 0.396062103999137 4 2 2 -6.74710694987406 LTS-018 chr3 140685828 160939432 20253605 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, TRIM59, NA NA NA NA NA NA NA NA NA LTS-018 GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SLC25A36, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, IQCJ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 HLTF, SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, SPSB4, PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.427756837010788 209 0.112819524769892 1.30692565713838 10065 0.380847500406149 4 2 2 -6.95901157275765 LTS-018 NA NA NA NA LTS-018 chr3 160939433 169381237 8441805 * c(LOC101243545, PDCD10, OTOL1, WDR49, SPTSSB, MECOM, SLITRK3, GOLIM4, NMD3, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, MIR551B, ZBBX, EGFEM1P) 0.417991979138657 25 0.128313314455931 1.38345043949238 1330 0.587648004257038 4 2 2 -6.73557050373477 LTS-018 chr3 169381238 169482458 101221 * c(MECOM, TERC) NA 0 NA 1.836 1 NA NA NA NA NA LTS-018 chr3 169482459 169550942 68484 * c(LRRC34, LRRIQ4, MYNN, TERC, ACTRT3) 0.426215870226105 4 0.0432078310803338 1.86442988688414 195 0.338034833039248 6 3 3 -6.73393957315321 LTS-018 chr3 169550943 169555205 4263 * LRRIQ4 NA 0 NA 1.533 1 NA NA NA NA NA LTS-018 chr3 169555206 178916769 9361564 * c(LOC100128164, LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, ECT2, RPL22L1, NLGN1, TNIK, NAALADL2, GHSR, GPR160, LRRIQ4, SAMD7, TMEM212, CLDN11, PIK3CA, PLD1, PRKCI, EIF5A2, NCEH1, SLC7A14, ZMAT3, FNDC3B, SKIL, SLC2A2, MIR569, SEC62, TBL1XR1, LRRC31, PHC3, SPATA16, TNFSF10) 0.401747247721978 53 0.121229693584849 1.33058249551149 3165 0.37287239679098 4 2 2 -6.80585360633955 LTS-018 chr3 178916770 178952009 35240 * PIK3CA NA 0 NA 2.34687640414017 86 0.782167725897961 7 NA NA -5.76447142010004 LTS-018 chr3 178952010 195306436 16354427 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, LINC00888, TMEM44-AS1, LOC100507391, ABCC5, MIR5692C1, OPA1-AS1, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, TTC14, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, MCF2L2, NA NA NA NA NA NA NA NA NA LTS-018 ATP11B, VPS8, ACAP2, LOC253573, UTS2B, FETUB, LAMP3, KCNMB3, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, CCDC39, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, SOX2-OT, IL1RAP, KNG1, FLJ46066, FLJ42393, LINC00884, LPP, NDUFB5, OPA1, ZNF639, PEX5L, DNAJB11, PIK3CA, DCUN1D1, POLR2H, KLHL24, PPP1R2, TBCCD1, P3H2, ABCF3, LSG1, PARL, MFN1, YEATS2, MASP1, MCCC1, PSMD2, HRASLS, MRPL47, SENP2, GNB4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SOX2, SST, SNORA81, SNORD66, THPO, ATP13A3, MAP6D1, FXR1, B3GNT5, ATP13A4, MGC2889, ACTL6A, TP63, CHRD, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ, CAMK2N2, ECE2) 0.435006139990636 303 0.0916768649338215 1.33380262201688 11754 0.407538993246561 4 2 2 -6.80084485778935 LTS-018 NA NA NA NA LTS-018 chr3 195306437 195345045 38609 * APOD NA 0 NA 3.166 1 NA NA NA NA NA LTS-018 chr3 195345046 195452951 107906 * c(MUC20, MIR570, SDHAP2) 0.332503789765436 20 0.0893063768572459 1.77922122169989 125 0.910891569411973 6 4 2 -6.75755108317372 LTS-018 chr3 195452952 195453017 66 * MUC20 NA 0 NA 2.33 1 NA NA NA NA NA LTS-018 chr3 195453018 195475926 22909 * c(MUC20, MUC4) 0.424550284675515 3 0.0814636933445405 2.78795775234735 66 2.34735284382782 11 6 5 -6.73319473328699 LTS-018 chr3 195475927 195475989 63 * MUC4 0.466 1 NA 1.155 1 NA NA NA NA NA LTS-018 chr3 195475990 197608381 2132392 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.428039561954737 79 0.0785341194609493 1.26592027617971 2874 0.322642648404374 4 2 2 -6.82053615893804 LTS-018 chr3 197608382 197770512 162131 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.27848228777881 330 0.344393293181922 4 NA NA -5.76900948517379 LTS-018 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.341 1 NA 0.621626668817003 13 0.0895418538435719 1 1 0 -5.78711976028117 LTS-018 chr4 60336 434337 374002 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.221262217803554 15 0.0765853398876984 0.674242134147144 283 0.190533768420464 1 1 0 -7.21230564927371 LTS-018 chr4 434338 434436 99 * c(ZNF721, ABCA11P) NA 0 NA 0.702 1 NA NA NA NA NA LTS-018 chr4 434437 2733624 2299188 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, SCARNA22, WHSC1, NELFA, SLBP, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, TMEM129) 0.127583211101435 116 0.0594186554180937 0.77007213757103 3948 0.22221031652349 2 2 0 -6.77426896863621 LTS-018 chr4 2733625 3451109 717485 * c(HTT-AS, MFSD10, ADD1, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, RGS12, SH3BP2, TNIP2, NOP14, FAM193A) 0.128476477729974 23 0.0610317742684557 0.812891763827663 1529 0.238325137861145 2 2 0 -6.74325065817105 LTS-018 chr4 3451110 3589560 138451 * c(DOK7, LINC00955, HGFAC, LRPAP1) 0.472 1 NA 0.839613259037645 223 0.209881993746087 2 2 0 -5.76964692941233 LTS-018 chr4 3589561 3591714 2154 * LINC00955 0.376577969322969 22 0.107552383290726 1.29795217075292 48 0.753455719225313 8 5 3 -6.73521585619278 LTS-018 chr4 3591715 3769500 177786 * c(LOC100133461, ADRA2C, LINC00955) 0.175 1 NA 0.78681482979494 23 0.236640209881597 2 2 0 -5.76469496818649 LTS-018 chr4 3769501 36067990 32298490 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR4275, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, ARAP2, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, NA NA NA NA NA NA NA NA NA LTS-018 CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, FAM86EP, RBPJ, KCNIP4-IT1, SMIM20, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, PCDH7, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, TBC1D19, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, CCKAR, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.132439548926081 263 0.0532649048485623 0.808772520784697 9661 0.238441009984644 2 2 0 -6.81324630571776 LTS-018 NA NA NA NA LTS-018 chr4 36067991 40816682 4748692 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.118048899472527 66 0.0546357913548408 0.763623888072083 3221 0.297110011980579 2 2 0 -6.84775302224317 LTS-018 chr4 40816683 40816687 5 * APBB2 NA 0 NA 0.914 1 NA NA NA NA NA LTS-018 chr4 40816688 41748224 931537 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1, PHOX2B) 0.106303867364301 12 0.0706624498455992 0.875017536525841 514 0.416636928153481 2 2 0 -6.85943697818298 LTS-018 chr4 41748225 49019232 7271008 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43, PHOX2B) 0.120986206131275 63 0.059584703721364 0.799023742953652 3728 0.315594908305536 2 2 0 -6.76698466585186 LTS-018 chr4 49019233 49064107 44875 * CWH43 NA 0 NA 0.756484825958455 40 0.144087971703899 2 NA NA -5.76785293408796 LTS-018 chr4 52709193 52888557 179365 * c(DCUN1D4, LRRC66, SGCB) 0.161 1 NA 0.838171751745552 243 0.170449782300328 2 2 0 -5.774029926359 LTS-018 chr4 52888558 56238786 3350229 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.13270622847123 33 0.0447218253950648 0.815227436367281 1448 0.236615597005233 2 2 0 -6.75409851939276 LTS-018 chr4 56238787 56238847 61 * c(SRD5A3-AS1, SRD5A3) NA 0 NA 0.333 1 NA NA NA NA NA LTS-018 chr4 56238848 57845220 1606373 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.136775841194529 39 0.0566568023485413 0.746769536253616 1482 0.232728668154292 2 2 0 -6.80660352704457 LTS-018 chr4 57845221 57852456 7236 * POLR2B NA 0 NA 0.891 1 NA NA NA NA NA LTS-018 chr4 57852457 69363297 11510841 * c(FTLP10, EPHA5-AS1, CENPC, TMPRSS11B, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, POLR2B, UBA6-AS1, LOC550113, UBA6, TMPRSS11GP, TMPRSS11D) 0.133735569372255 56 0.0510094847304649 0.828610425897476 1863 0.323517535843542 2 2 0 -6.83483889041167 LTS-018 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.673 1 NA NA NA NA NA LTS-018 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.50476761085978 41 0.355467478187218 4 NA NA -5.76843755807827 LTS-018 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.881 1 NA NA NA NA NA LTS-018 chr4 69512574 90875515 21362942 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, CNOT6L, NA NA NA NA NA NA NA NA NA LTS-018 C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.123581632304987 238 0.0549737170183395 0.79788186734777 13037 0.259347287946071 2 2 0 -6.75986829286788 LTS-018 NA NA NA NA LTS-018 chr4 90875516 98109018 7233503 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.13487624008516 45 0.0490030095962988 0.872346757860212 1374 0.30701199186832 2 2 0 -7.09173549933521 LTS-018 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.524 1 NA NA NA NA NA LTS-018 chr4 98480011 104000850 5520840 * c(MIR3684, LOC100507053, LINC01216, TSPAN5, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, EIF4E, METAP1, LOC256880, DAPP1, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, BANK1, PPP3CA, BDH2, RAP1GDS1, SLC39A8, UBE2D3, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.181887036592801 57 0.0663607470336732 0.566893033927489 2834 0.324822620849228 1 1 0 -7.24277145472576 LTS-018 chr4 104000851 104000878 28 * BDH2 NA 0 NA 0.926 1 NA NA NA NA NA LTS-018 chr4 104000879 106819131 2818253 * c(ARHGEF38-IT1, CENPE, NPNT, PPA2, TET2, ARHGEF38, BDH2, INTS12, TACR3, GSTCD, CXXC4) 0.104474151723682 19 0.0475537246190685 0.822083466145831 1261 0.30857948020019 2 2 0 -6.98993198647775 LTS-018 chr4 106819132 106819230 99 * NPNT NA 0 NA 0.989 1 NA NA NA NA NA LTS-018 chr4 106819231 106965717 146487 * NPNT 0.0817552946268301 3 0.0558957362715023 1.14535853264119 139 0.3300401572076 4 4 0 -6.76298702558875 LTS-018 chr4 106965718 106965771 54 * character(0) NA 0 NA 0.925 1 NA NA NA NA NA LTS-018 chr4 106965772 185550141 78584370 * c(SNHG8, SCOC-AS1, CLDN24, PP12613, MIR1243, MIR2054, MIR1305, MIR1973, MIR3140, MIR4276, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, GIMD1, SEC24B-AS1, MIR4799, MIR3688-2, LINC00499, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, RRH, PLK4, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, CYP2U1, WDR17, CLCN3, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, SPATA4, TRAM1L1, ENPP6, NA NA NA NA NA NA NA NA NA LTS-018 CPE, ASB5, CTSO, ZNF827, SH3D19, MGAT4D, WWC2-AS2, FAM218A, C4orf45, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, SGMS2, SYNPO2, AGA, EDNRA, EGF, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, ENPEP, ETFDH, FABP2, FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, KIAA0922, TRIM2, ANP32C, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, FBXO8, DKK2, GK3P, INTU, ARFIP1, ZNF330, GLRB, GPM6A, LINC01091, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RPL34-AS1, LINC01098, RNF175, ANK2, GRIA2, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, HADH, ANXA5, HMGB2, HPGD, LOC340017, CFI, PRSS48, LRIT3, IL2, IL15, ING2, IRF2, LOC389247, TRIM61, LINC01061, C4orf3, FAM92A1P2, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, GALNTL6, MIR302B, NDUFC1, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, LEF1, FAM198B, LARP7, MYOZ2, ASIC5, GALNT7, GATB, PITX2, PLRG1, CLDN22, EXOSC9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, HPF1, MCUB, MARCH1, LARP1B, BBS7, NEIL3, FBXW7, TMEM144, TMA16, ZGRF1, AP1AR, MAML3, DDX60, CDKN2AIP, TENM3, TMEM184C, PDGFC, FSTL5, STOX2, ANKRD50, RNF150, PCDH10, FNIP2, SH3RF1, METTL14, OSTC, IL21, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPL34, RPS3A, MSMO1, NEUROG2, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, HHIP, TNRC18P1, CEP170P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, MIR577, MIR578, TDO2, TLL1, TLR2, TRPC3, LINC00290, LOC728175, CETN4P, FAM160A1, UCP1, UGT8, VEGFC, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, HAND2-AS1, MAP9, TNIP3, JADE1, GLRA3, WWC2, NAA15, ABHD18, ALPK1, CEP44, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP3, TTC29, CASP6, MND1, SLC10A7, TKTL2, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, CBR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PRSS12, FHDC1, PDE5A, SAP30, INPP4B, CCNA2, SNORD73A, PAPSS1, LOC90768, PRMT9, DDX60L, LRAT, NAF1, AIMP1, TIFA, NDST3, TBCK, HAND2, RAPGEF2, MFAP3L, LRBA, SEC24D) 0.129664440050519 416 0.060472673038572 0.808904821118665 25522 0.443922894718603 2 2 0 -6.79453491854323 LTS-018 NA NA NA NA LTS-018 chr4 185550142 185686968 136827 * c(PRIMPOL, ACSL1, CENPU, CASP3) 0.153624858099228 14 0.0578999231338099 0.662670462655257 277 0.21016038552001 2 2 0 -6.85601683856267 LTS-018 chr4 185686969 190946097 5259129 * c(MIR3945, LINC01093, ZFP42, TRIML2, F11, ACSL1, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, SLC25A4, LOC339975, TRIML1, ANKRD37, KLKB1, HELT, LINC01060, C4orf47, MTNR1A, UFSP2, LRP2BP, CFAP97, SLED1, FLJ38576, TLR3, MIR3945HG, SNX25, SORBS2) 0.1721386526615 61 0.0896377591690715 0.814459814084452 2231 0.346721088209105 2 2 0 -6.84674764421341 LTS-018 chr4 190946098 190981567 35470 * character(0) NA 0 NA 1.00525921794588 18 0.96862487258528 3 NA NA -5.76454946156252 LTS-018 chr5 140347 163266 22920 * PLEKHG4B 0.429 1 NA 1.03052238088466 71 0.207471070442176 3 3 0 -5.76532627184714 LTS-018 chr5 163267 712144 548878 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.408686139885005 54 0.0755370545544483 1.08728496109695 1022 0.288866433555541 3 2 1 -6.93521775519278 LTS-018 chr5 712145 716871 4727 * character(0) NA 0 NA 1.66 1 NA NA NA NA NA LTS-018 chr5 716872 796495 79624 * ZDHHC11 0.386688906616841 11 0.10207136540854 1.66180289984631 90 0.636519737541304 5 3 2 -6.74781844189113 LTS-018 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 1.145 1 NA NA NA NA NA LTS-018 chr5 801171 7870083 7068913 * c(MIR4277, MIR4278, LOC100506688, MIR4454, MIR4457, MIR4635, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, LINC01019, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, NSUN2, MRPL36, SLC6A3, BRD9, SRD5A1, TERT, SDHAP3, LOC728613, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, MED10, NKD2, TRIP13) 0.437929115229596 98 0.0463991920186912 1.16921571182225 2740 0.285734196169334 4 2 2 -7.9228023634565 LTS-018 chr5 7870084 7878179 8096 * MTRR 0.474 1 NA 1.23081920149654 27 0.191287458391531 4 4 0 -5.76610181605516 LTS-018 chr5 7878180 21751172 13872993 * c(SNORD123, LOC100130744, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4637, MIR4636, CDH12, CDH18, MARCH6, BASP1, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, FBXL7, LOC285692, LOC285696, LOC401177, LINC01194, MARCH11, MTRR, MYO10, TAS2R1, FAM134B, FAM105A, ANKH, ANKRD33B, TRIO, GUSBP1, LOC729506, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.421866512412014 87 0.108512550133556 1.21414877705058 3234 0.432766581306309 4 2 2 -7.37251493063683 LTS-018 chr5 21751173 21854957 103785 * CDH12 NA 0 NA 0.73359113891232 63 0.121928124261464 2 NA NA -5.79262694887225 LTS-018 chr5 21854958 22078490 223533 * CDH12 NA 0 NA 1.27 1 NA NA NA NA NA LTS-018 chr5 22078491 39122504 17044014 * c(CDH6, MIR4279, MIR3650, EGFLAM-AS2, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, SUB1, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, AMACR, RICTOR, FYB, NIPBL, RAI14, GDNF, DROSHA, LOC340107, LOC340113, IL7R, LIFR, NPR3, SLC45A2, RXFP3, ZFR, PMCHL1, MTMR12, WDR70, BRIX1, C5orf22, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, NA NA NA NA NA NA NA NA NA LTS-018 MIR580, LSP1P3, SPEF2, ADAMTS12, OSMR, LMBRD2, NUP155) 0.425476861592462 124 0.104504869590663 1.18074793200494 6540 0.333795953424568 3 2 1 -7.50106186729467 LTS-018 NA NA NA NA LTS-018 chr5 39122505 39124285 1781 * FYB NA 0 NA 0.852 1 NA NA NA NA NA LTS-018 chr5 39124286 45262385 6138100 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, HCN1, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6) 0.414131235207606 56 0.106064547855013 1.12896786394449 2818 0.354131914597994 3 2 1 -6.90512593037467 LTS-018 chr5 45262386 45696278 433893 * HCN1 NA 0 NA 0.999293628874651 55 0.168191669563144 3 NA NA -5.82914889784202 LTS-018 chr5 49692017 49694583 2567 * EMB 0.438 1 NA 0.894307909295667 47 0.385849616974695 2 2 0 -5.76454887234904 LTS-018 chr5 49694584 58652680 8958097 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, LOC642366, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, PLPP1, HSPB3) 0.414016152631448 82 0.085212015726713 0.895581338344294 3929 0.280220776399943 2 1 1 -7.56326548256134 LTS-018 chr5 58652681 58652704 24 * PDE4D NA 0 NA 0.751 1 NA NA NA NA NA LTS-018 chr5 58652705 59189692 536988 * PDE4D NA 0 NA 0.621188068259132 39 0.213528988383058 1 NA NA -6.04901515763981 LTS-018 chr5 59189693 59284243 94551 * PDE4D NA 0 NA 0.985 1 NA NA NA NA NA LTS-018 chr5 59284244 68862501 9578258 * c(LRRC70, FAM159B, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, ERCC8, SREK1, MARVELD2, CCDC125, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, TAF9, GTF2H2C, ELOVL7, TRAPPC13, CCNB1, NDUFAF2, MRPS36) 0.371756669034269 41 0.118123111676738 0.934732386906183 4247 0.409378199495155 3 2 1 -7.43133697273196 LTS-018 chr5 68862502 68902891 40390 * GTF2H2C NA 0 NA 0.406 1 NA NA NA NA NA LTS-018 chr5 68902892 70357226 1454335 * c(GUSBP9, NA, SMA4, SMA5, GTF2H2, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) 0.42486706455546 2 0.0127279220613579 0.570668290465574 103 0.36858513056967 2 1 1 -7.37786985800691 LTS-018 chr5 70357227 70369072 11846 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.957 1 NA NA NA NA NA LTS-018 chr5 70369073 93775867 23406795 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-018 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.399061162768167 201 0.109321381839799 0.935624866767512 10196 0.338035272247142 3 2 1 -8.75667575218659 LTS-018 NA NA NA NA LTS-018 chr5 93775868 93788652 12785 * KIAA0825 NA 0 NA 0.651 1 NA NA NA NA NA LTS-018 chr5 93788653 93998084 209432 * c(KIAA0825, SLF1) NA 0 NA 0.69428560874926 128 0.13902472956496 2 NA NA -5.88459804142949 LTS-018 chr5 93998085 96367779 2369695 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.43351120557439 79 0.0621882500843661 0.878742448618407 2154 0.228310348036065 2 1 1 -6.99437147007962 LTS-018 chr5 96367780 96367875 96 * character(0) 0.397 1 NA 2.189 1 NA NA NA NA NA LTS-018 chr5 96367876 96371144 3269 * character(0) 0.451975284051254 3 0.01955334583475 1.29002398772226 72 0.380270732772643 4 2 2 -7.64296782956594 LTS-018 chr5 96371145 96371241 97 * character(0) NA 0 NA 1.037 1 NA NA NA NA NA LTS-018 chr5 96371242 102366694 5995453 * c(LOC100133050, LOC100289230, CHD1, SLCO6A1, LIX1, RGMB, FAM174A, SLCO4C1, RGMB-AS1, PAM, RIOK2, ST8SIA4) 0.374224989407974 22 0.128598480800005 0.935218872017017 1086 0.401525395299176 3 2 1 -7.20436531801863 LTS-018 chr5 102366695 103951696 1585002 * c(PPIP5K2, PAM, GIN1, NUDT12, C5orf30) 0.343711698482301 18 0.0598969703643142 1.17600742147633 408 0.266455223768095 3 2 1 -6.88310859727036 LTS-018 chr5 103951697 118792036 14840340 * c(LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, STARD4, WDR36, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, TNFAIP8, DTWD2, APC, HSD17B4, TICAM2, KCNN2, MAN2A1, MCC, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, REEP5, CAMK4, TSSK1B, TSLP, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.402306260552017 83 0.0945156808624171 0.9320273077276 4997 0.308594860187479 2 1 1 -8.48263063158394 LTS-018 chr5 118792037 129522346 10730310 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, HSD17B4, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.413187161866956 83 0.0617937808263087 0.981442179844445 3425 0.263272714977713 3 2 1 -7.93255128813712 LTS-018 chr5 130494663 131817715 1323053 * c(MIR3936, CSF2, ACSL6, HINT1, IL3, IRF1, C5orf56, RAPGEF6, LOC553103, CDC42SE2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.418353308608965 50 0.053134795855562 0.898623100445941 1432 0.418652465734685 2 1 1 -6.81047505746064 LTS-018 chr5 131817716 134296736 2479021 * c(MIR1289-2, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, FSTL4, SEPT8, JADE2, GDF9, UQCRQ, AFF4, HSPA4, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, ZCCHC10, PPP2CA, C5orf15, CCNI2, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.39275804167162 39 0.0910666289273054 1.16265071179222 3083 0.39224235504092 3 2 1 -6.83511047964083 LTS-018 chr5 134296737 134296739 3 * PCBD2 NA 0 NA 2.169 1 NA NA NA NA NA LTS-018 chr5 134296740 137423630 3126891 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, PKD2L2, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, PITX1, TRPC7, SPOCK1, TGFBI, WNT8A, PCBD2, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.411060098576256 40 0.0485701976788658 1.2621397783018 1729 0.494852191091222 4 2 2 -6.84735361588391 LTS-018 chr5 137423631 137424585 955 * WNT8A NA 0 NA 0.772 1 NA NA NA NA NA LTS-018 chr5 137424586 140553623 3129038 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, GFRA3, SNORD63, SNORA74A, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, MZB1, PAIP2, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, NA NA NA NA NA NA NA NA NA LTS-018 PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.420761148461504 98 0.0666998585757168 1.19175780139739 4967 0.269374541200071 4 2 2 -7.23757961365683 LTS-018 NA NA NA NA LTS-018 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.368 1 NA NA NA NA NA LTS-018 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.278782222826266 3 0.231156512634477 0.454345583444628 62 0.534410886154664 4 3 1 -6.74505259213357 LTS-018 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.943 1 NA NA NA NA NA LTS-018 chr5 140559822 146420297 5860476 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, GPR151, PRELID2, SH3RF2, PLAC8L1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, NA NA NA NA NA NA NA NA NA LTS-018 PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, ARAP3, TAF7, LOC729080, NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.422486909505498 66 0.112082109637084 1.20797156136023 4641 0.292731044004433 3 2 1 -7.3154396408598 LTS-018 NA NA NA NA LTS-018 chr5 146420298 149432018 3011721 * c(SPINK5, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, CSNK1A1, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, HMGXB3, IL17B, HTR4, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, PPP2R2B, SPINK9, SPINK1, CARMN, PCYOX1L, SH3TC2, FBXO38, TIGD6, SPINK7, JAKMIP2) 0.407162911564707 64 0.0875474474531129 1.26971834043226 3013 0.365391236134629 4 2 2 -6.84974061194555 LTS-018 chr5 149432019 149934147 502129 * c(CDX1, CSF1R, HMGXB3, NDST1, ARSI, PDGFRB, RPS14, SLC6A7, TCOF1, CAMK2A, CD74) 0.337277084064374 28 0.0518640367391346 1.48596508190956 1110 0.341472080238346 6 4 2 -6.96215059696942 LTS-018 chr5 149934148 175386654 25452507 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, G3BP1, TNIP1, SLU7, CPLX2, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, C5orf47, C5orf58, LSM11, ZNF300P1, NUDCD2, UBLCP1, ADRA1B, NKX2-5, SLC36A2, CREBRF, PPP1R2P3, FAM71B, RNF145, DOCK2, DRD1, DUSP1, EBF1, SLC36A1, FABP6, FAT2, FOXI1, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, NA NA NA NA NA NA NA NA NA LTS-018 GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, NDST1, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, HMP19, NEURL1B, SPDL1, THG1L, GALNT10, RBM22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NMUR2, ERGIC1, TENM2, RARS, ZBED8, SGCD, RANBP17, SLIT3, BNIP1, SPARC, SNORA74B, STK10, MIR585, TTC1, CCNJL, PANK3, SAP30L, CPEB4, THOC3, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1) 0.399891065181084 190 0.103642523923564 1.21645585514829 12090 0.427323509511167 3 2 1 -7.70787449120589 LTS-018 NA NA NA NA LTS-018 chr5 175386655 175387333 679 * THOC3 NA 0 NA 0.339678525258766 40 0.246179104072728 1 NA NA -5.76547370756672 LTS-018 chr5 175387334 175392041 4708 * THOC3 NA 0 NA 0.822648365287317 42 0.528385890467435 2 NA NA -5.76442069305287 LTS-018 chr5 175392042 175477133 85092 * THOC3 NA 0 NA 2.55469925236223 44 1.59551578327933 8 NA NA -5.76441072980021 LTS-018 chr5 175477134 180687212 5210079 * c(MIR1229, MIR4281, LOC100507387, MIR4638, HEIH, RACK1, RGS14, BTNL3, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, BTNL9, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, OR2V1, PRELID1, FAM153A, ARL10, OR2V2, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, NA NA NA NA NA NA NA NA NA LTS-018 C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, SNORD95, SNORD96A, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, TRIM7, CANX, MXD3, TRIM52, PHYKPL, SQSTM1, UNC5A, TRIM41, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.415098837038044 166 0.0836550526565865 1.19961137033432 7539 0.309116438612913 3 2 1 -7.24922573748817 LTS-018 NA NA NA NA LTS-018 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 1.30223748505617 21 0.327310170356877 4 NA NA -5.76442619146553 LTS-018 chr6 203389 349317 145929 * DUSP22 0.432 1 NA 1.00957581417465 66 0.227406617531174 3 3 0 -5.77368984040444 LTS-018 chr6 349318 17282657 16933340 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, EDN1, SERPINB1, PIP5K1P1, F13A1, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, FAM50B, GCNT2, GMDS, GMPR, LINC01622, LY86-AS1, CAGE1, NA NA NA NA NA NA NA NA NA LTS-018 MYLIP, HIVEP1, MYLK4, TUBB2B, C6orf52, IRF4, JARID2, PSMG4, LINC01011, HTATSF1P2, STMND1, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, TMEM14C, SERPINB6, SERPINB9, GFOD1, ELOVL2, PAK1IP1, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, DTNBP1, ADTRP, RIPK1, PRPF4B, GCM2, CD83, FOXQ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CDYL, LY86, EEF1E1) 0.430661008159767 194 0.0890705073832425 1.13954911957132 7571 0.338787293782171 3 2 1 -7.2403037720045 LTS-018 NA NA NA NA LTS-018 chr6 17282658 17282879 222 * RBM24 NA 0 NA 1.645 1 NA NA NA NA NA LTS-018 chr6 17282880 24467062 7184183 * c(CAP2, NRSN1, MBOAT1, HDGFL1, E2F3, KDM1B, RBM24, RNF144B, GPLD1, ID4, KAAG1, NHLRC1, CASC15, FAM8A1, DCDC2, CDKAL1, PRL, MRS2, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, NUP153) 0.422439573818906 53 0.126192218667593 1.22311344426216 2142 0.686295032661324 4 2 2 -6.86076407872362 LTS-018 chr6 24467063 29798154 5331092 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, GPLD1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA LTS-018 HCG11, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, ZSCAN31, ZNF192P1, SLC17A1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, ZSCAN12, KIAA0319) 0.430596663610076 165 0.0980257922678583 1.14794667460209 5655 0.349554613198049 3 2 1 -7.07361057278033 LTS-018 NA NA NA NA LTS-018 chr6 29798155 29855582 57428 * character(0) NA 0 NA 0.094 1 NA NA NA NA NA LTS-018 chr6 29855583 29910715 55133 * character(0) NA 0 NA 0.348010325008511 39 0.568697742924146 1 NA NA -5.77867195100045 LTS-018 chr6 29910716 29910720 5 * character(0) NA 0 NA 0.715 1 NA NA NA NA NA LTS-018 chr6 29910721 31236900 1326180 * character(0) 0.431419222287381 123 0.101470263858701 1.16132945038358 3164 0.305793599432982 4 2 2 -6.97387236355943 LTS-018 chr6 31236901 31237257 357 * character(0) 0.364 1 NA 0.972999876175091 7 0.081939001702486 3 3 0 -5.76480203328493 LTS-018 chr6 31237258 31382911 145654 * character(0) 0.370654480695011 51 0.118600757197596 0.907461519602666 166 0.446039868093023 3 2 1 -6.74918134245182 LTS-018 chr6 31382912 31382932 21 * character(0) 0.473 1 NA 0.909060999506823 2 0.297691954879536 2 2 0 -5.76441250084064 LTS-018 chr6 31382933 32337686 954754 * character(0) 0.444530691790887 161 0.0754426770172424 1.16659445014389 4465 0.291452158276008 4 2 2 -6.9505642148606 LTS-018 chr6 32337687 32485458 147772 * HLA-DRB5 NA 0 NA 1.14840513266017 121 0.301158950325043 3 NA NA -5.76733942470883 LTS-018 chr6 32485459 32485481 23 * HLA-DRB5 NA 0 NA 2.86 1 NA NA NA NA NA LTS-018 chr6 32485482 32485487 6 * HLA-DRB5 0.288 1 NA 2.611 1 NA NA NA NA NA LTS-018 chr6 32485488 32549649 64162 * HLA-DRB5 0.314660231556836 57 0.1171569647352 1.73232657377651 127 1.18017692680067 7 5 2 -6.73817697923509 LTS-018 chr6 32549650 32551828 2179 * HLA-DRB5 NA 0 NA 1.053 1 NA NA NA NA NA LTS-018 chr6 32551829 32557550 5722 * HLA-DRB5 0.267973556068482 18 0.102549987810823 1.106695619051 32 0.650348340283634 8 6 2 -6.73922408574807 LTS-018 chr6 32557551 32557606 56 * HLA-DRB5 0.483 1 NA 1.2056611292147 3 0.343141855991561 3 3 0 -5.7644131315412 LTS-018 chr6 32557607 32605359 47753 * c(HLA-DQA1, HLA-DRB5) 0.412194575739858 12 0.121653351284656 1.3036420474033 21 1.24742204451535 5 3 2 -6.73777916436823 LTS-018 chr6 32605360 32610953 5594 * HLA-DQA1 0.411546763574971 33 0.10560225010516 0.741627648922147 107 0.929279686937361 7 4 3 -6.73889529365869 LTS-018 chr6 32610954 32610960 7 * HLA-DQA1 0.462 1 NA 2.076 1 NA NA NA NA NA LTS-018 chr6 32610961 32629889 18929 * HLA-DQA1 0.420633588051556 27 0.0825319069785478 1.04832566806759 91 0.885652076983508 4 2 2 -6.73660020294182 LTS-018 chr6 32629890 32629995 106 * character(0) 0 1 NA 2.26183584314197 3 3.68746868913261 7 7 0 -5.76441013477686 LTS-018 chr6 32629996 32781589 151594 * character(0) 0.340702247537503 22 0.112171067949131 1.2606896185662 149 0.807364294215054 3 2 1 -6.76205167412526 LTS-018 chr6 32781590 32795706 14117 * character(0) 0.444 1 NA 1.10180343552006 87 0.303747341509251 3 3 0 -5.76442644087401 LTS-018 chr6 32795707 33035512 239806 * character(0) 0.423866938598737 29 0.0898024240733964 1.10397721634352 587 1.06288436691292 4 2 2 -6.73960408932122 LTS-018 chr6 33035513 33054860 19348 * character(0) 0.449051633584422 5 0.0200124960961895 2.41278319236127 131 27.039551894018 19 10 9 -7.44100634321283 LTS-018 chr6 33054861 36567677 3512817 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, FANCE, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, ANKS1A, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPARD, UHRF1BP1, MAPK13, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, NA NA NA NA NA NA NA NA NA LTS-018 UQCC2) 0.441672485755508 86 0.0726002943243215 1.16136274096575 5445 0.868401448337347 4 2 2 -6.84166481396237 LTS-018 NA NA NA NA LTS-018 chr6 36567678 36568818 1141 * SRSF3 NA 0 NA 2.984 1 NA NA NA NA NA LTS-018 chr6 36568819 36936272 367454 * c(MIR3925, CDKN1A, PI16, C6orf89, MTCH1, RAB44, PPIL1, CPNE5, SRSF3) 0.436721544902542 11 0.0384710044295464 1.35763503427352 505 0.314478456019875 4 2 2 -6.78019457660165 LTS-018 chr6 36936273 36936324 52 * MTCH1 NA 0 NA 1.245 1 NA NA NA NA NA LTS-018 chr6 36936325 44403438 7467114 * c(LOC100131047, LINC01512, TOMM6, MIR4647, MIR4641, MIR4642, MIR4462, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, BTBD9, FOXP4, KLHDC3, TAF8, CCDC167, PTCRA, DNAH8, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, TSPO2, UNC5CL, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, MTCH1, ZNF318, YIPF3, USP49, MDGA1, GNMT, GLO1, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, NA NA NA NA NA NA NA NA NA LTS-018 PRICKLE4, HSP90AB1, TREML1, TREML3P, SLC35B2, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, NFYA, MRPL2, PEX6, PGC, PIM1, TREM2, TREM1, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, LRFN2, AARS2, XPO5, PTK7, PRPH2, ZFAND3, C6orf132, MRPL14, DLK2, SRF, TBCC, BYSL, TDRG1, VEGFA, TFEB, TREML2, KCNK16, TTBK1, KCNK5, RRP36, CCND3, KCNK17, ABCC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 KLC4, RNF8, TJAP1, NCR2, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.435843674814449 212 0.105463566655131 1.19202669530668 9372 0.310150929743753 3 2 1 -7.36931191370043 LTS-018 NA NA NA NA LTS-018 chr6 44403439 44415785 12347 * c(MIR4642, CDC5L) 0.439 1 NA 1.37624025179384 39 0.670765576665504 4 4 0 -5.76441015964838 LTS-018 chr6 44415786 50683009 6267224 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, CLIC5, CENPQ, ENPP5, RHAG, MIR586, CRISP2, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.429537871930312 67 0.112211781662697 1.24429467725475 2552 0.348633040203126 4 2 2 -7.03950241235751 LTS-018 chr6 50683010 50786571 103562 * c(TFAP2B, TFAP2D) 0.457 1 NA 1.25901871361495 45 0.317615576673208 4 4 0 -5.76942342038821 LTS-018 chr6 50786572 51747898 961327 * c(PKHD1, TFAP2B) 0.252720437604861 9 0.232966616587966 1.2400198970177 345 0.707085874897294 4 3 1 -6.76033463505707 LTS-018 chr6 51747899 51893109 145211 * PKHD1 NA 0 NA 1.1385231740873 109 0.17374986512314 3 NA NA -5.77054030093359 LTS-018 chr6 51893110 51897847 4738 * PKHD1 NA 0 NA 0.809 1 NA NA NA NA NA LTS-018 chr6 51897848 52054249 156402 * c(IL17A, MIR206, MIR133B, PKHD1) 0.469 1 NA 0.897456160626369 169 0.157095810985677 2 2 0 -5.81808412078327 LTS-018 chr6 52054250 53516408 1462159 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MCM3, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.36873684087648 17 0.0875020587993085 0.882209105537882 1293 0.216133696576763 2 1 1 -7.1691985942649 LTS-018 chr6 53516409 57244767 3728359 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.391670579514315 28 0.0533234117755629 0.949327513809637 2445 0.20176201029217 3 2 1 -7.76053553791594 LTS-018 chr6 57244768 57244780 13 * PRIM2 0.442 1 NA 1.648 1 NA NA NA NA NA LTS-018 chr6 57244781 57512678 267898 * PRIM2 0.364517011524234 41 0.0538207617025614 1.35682803200348 98 0.737645828636008 3 2 1 -6.74753022959063 LTS-018 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.948425251480223 19 0.157789370301415 3 NA NA -6.1569318284842 LTS-018 chr6 62390154 62407067 16914 * KHDRBS2 0.4 1 NA 1.04753492332621 23 0.232649815729334 3 3 0 -5.7646693051552 LTS-018 chr6 62407068 73951866 11544799 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.390152219450922 58 0.0482924425981873 0.971931697291915 2701 0.282996083567507 3 2 1 -7.83029133591847 LTS-018 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.841 1 NA NA NA NA NA LTS-018 chr6 73952151 74440383 488233 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.382714746514684 13 0.0560081266997054 0.837259739706473 636 0.2127427683671 2 1 1 -7.0868978236596 LTS-018 chr6 74440384 74446008 5625 * CD109 NA 0 NA 0.985 1 NA NA NA NA NA LTS-018 chr6 74446009 88279360 13833352 * c(HMGN3-AS1, LOC100506804, SYNCRIP, SLC35A1, CGA, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, CFAP206, PRSS35, LCA5, C6orf163, CEP162, DOPEY1, ZNF292, IBTK, SENP6, SNORD50A, FILIP1, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, RARS2, SMIM8, SNX14, BCKDHB, RNY4, LINC01590, ELOVL4, SNORD50B, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, NA NA NA NA NA NA NA NA NA LTS-018 SNAP91) 0.357447891863829 75 0.104867140311525 0.946899360940643 5084 0.258545290136131 3 2 1 -8.4825877388906 LTS-018 NA NA NA NA LTS-018 chr6 88279361 88294311 14951 * RARS2 NA 0 NA 0.673 1 NA NA NA NA NA LTS-018 chr6 88294312 88377178 82867 * c(ORC3, RARS2) 0.230200704395081 3 0.0156204993518133 0.680399565632312 146 0.139509847987172 1 1 0 -7.62130275862158 LTS-018 chr6 88377179 88384869 7691 * AKIRIN2 NA 0 NA 0.988 1 NA NA NA NA NA LTS-018 chr6 88384870 93950933 5566064 * c(MIR4464, MIR4643, PNRC1, CNR1, PM20D2, SRSF12, EPHA7, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, AKIRIN2, LYRM2, RRAGD, BACH2, MAP3K7, SPACA1, GJA10, RNGTT, CASP8AP2) 0.348839619154952 54 0.13355366622076 0.886739928611287 2401 0.316954386506062 2 1 1 -7.28707405977466 LTS-018 chr6 93950934 99728669 5777736 * c(MIR2113, FUT9, KLHL32, EPHA7, UFL1, MMS22L, FBXL4, NDUFAF4, POU3F2, TSG1, MANEA, GPR63, FAXC, FHL5) 0.41254784693448 13 0.0513265063725387 0.965252727609376 1072 0.272094381306281 3 2 1 -7.82415696137342 LTS-018 chr6 99728670 99951742 223073 * c(PNISR, COQ3, FAXC, USP45) 0.26404094145643 14 0.112745775486756 1.18177341655599 389 0.368395994374877 4 3 1 -6.78541819005514 LTS-018 chr6 99951743 99955253 3511 * USP45 NA 0 NA 0.632 1 NA NA NA NA NA LTS-018 chr6 99955254 109665369 9710116 * c(LIN28B-AS1, TSTD3, LOC100422737, LOC100996634, ASCC3, BVES, SEC63, BVES-AS1, AIM1, CCDC162P, FOXO3, LACE1, SCML4, SESN1, CEP57L1, OSTM1, GRIK2, LINC00222, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM13, PRDM1, POPDC3, SIM1, NR2E1, MCHR2-AS1, ARMC2, MCHR2, RTN4IP1, USP45, SNX3, CCNC, ATG5) 0.353105491151462 85 0.0810417518703692 0.947060514263427 3667 0.279429198444561 3 2 1 -7.90745902578465 LTS-018 chr6 109665370 109669552 4183 * character(0) NA 0 NA 0.814 1 NA NA NA NA NA LTS-018 chr6 109669553 110064605 395053 * c(AK9, PPIL6, MICAL1, SMPD2, CD164, ZBTB24, FIG4) 0.416495759714424 25 0.126732092752125 0.731732086314655 767 0.212538425274579 2 1 1 -6.77387070258322 LTS-018 chr6 110064606 117870868 7806263 * c(TRAPPC3L, TRAF3IP2, GTF3C6, SLC16A10, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, GPRC6A, RFX6, CDK19, TSPYL4, FRK, VGLL2, FYN, FAM26E, AMD1, GPR6, LINC01268, FLJ34503, DCBLD1, DSE, HDAC2, RSPH4A, KPNA5, LAMA4, MARCKS, FAM26F, GSTM2P1, RFPL4B, TUBE1, CDC40, RWDD1, GOPC, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, TSPYL1, TPI1P3, METTL24, RPF2, DDO, SLC22A16, WISP3, WASF1, MFSD4B, FIG4) 0.336850025389639 90 0.0951373282994381 1.00016666280471 4330 0.333355897492903 3 2 1 -7.06186513916929 LTS-018 chr6 117870869 117870920 52 * c(DCBLD1, GOPC) NA 0 NA 0.95 1 NA NA NA NA NA LTS-018 chr6 117870921 121624853 3753933 * c(LOC100287632, NUS1, TBC1D32, SLC35F1, BRD7P3, MCM9, ASF1A, DCBLD1, LOC285762, CEP85L, MAN1A1, PLN, GOPC, MIR548B, FAM184A) 0.336739950901009 10 0.125791714971836 0.935469797667497 1101 0.209867792973623 3 2 1 -7.73881232669948 LTS-018 chr6 121624854 125584585 3959732 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1, TPD52L1, RNF217-AS1) 0.35082720255006 49 0.0909553929319277 1.0626206200024 1328 0.349795304396315 3 2 1 -6.7559053324751 LTS-018 chr6 125584586 126661591 1077006 * c(MIR5695, NCOA7, HINT3, HEY2, CENPW, HDDC2, TRMT11, LOC643623, TPD52L1) 0.19076734989151 8 0.0353773030547634 0.810934382972329 450 0.379743411730584 1 1 0 -7.81740610969297 LTS-018 chr6 126661592 139145121 12483530 * c(LOC100130476, LINC00271, NHEG1, MIR3145, MIR3662, SMLR1, LINC01013, GVQW2, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, TAAR1, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, EPB41L2, EYA4, HEBP2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, TAAR6, SLC35D3, IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, CENPW, SOGA3, THEMIS, LAMA2, MAP3K5, FLJ46906, MYB, ENPP1, ENPP3, PEX7, IL20RA, AHI1, VNN3, ECHDC1, ARFGEF3, NA NA NA NA NA NA NA NA NA LTS-018 NHSL1, PTPRK, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, ALDH8A1, TCF21, TNFAIP3, OR2A4, RNF146, TAAR8, STX7, L3MBTL3, RSPO3, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1) 0.358839569293143 91 0.0976915319208139 0.972465384239724 6451 0.347049537111951 3 2 1 -7.4230984146391 LTS-018 NA NA NA NA LTS-018 chr6 139145122 139145137 16 * ECT2L NA 0 NA 1.212 1 NA NA NA NA NA LTS-018 chr6 139145138 146050446 6905309 * c(LOC100132735, MIR3668, LINC01277, MIR4465, CITED2, ADAT2, LOC153910, ZC2HC1B, TXLNB, FUCA2, PHACTR2-AS1, HIVEP2, ECT2L, NMBR, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, UTRN, EPM2A, SF3B5, LTV1, REPS1, PEX3, STX11, PHACTR2) 0.298047399340438 39 0.0922442263827101 1.09575793032111 2402 0.288102186520041 3 2 1 -7.02885473061186 LTS-018 chr6 146050447 146056288 5842 * c(LOC100507557, EPM2A) NA 0 NA 0.718 1 NA NA NA NA NA LTS-018 chr6 146056289 151941042 5884754 * c(UST-AS1, LOC100507557, RAET1E-AS1, UST, RAB32, KATNA1, GINM1, STXBP5, RAET1E, RAET1L, TAB2, SASH1, SHPRH, MTHFD1L, GRM1, ZC3H12D, NUP43, RAET1G, SUMO4, SAMD5, IYD, PCMT1, RMND1, PLEKHG1, ZBTB2, RPS18P9, RAET1K, KATNBL1P6, STXBP5-AS1, ULBP3, EPM2A, ARMT1, ADGB, CCDC170, ULBP2, ULBP1, PPP1R14C, FBXO30, LRP11, PPIL4, LATS1, AKAP12) 0.368682719718414 70 0.0736841561356607 0.982248741949349 3441 0.493068452523968 3 2 1 -6.88146099429717 LTS-018 chr6 151941043 152447941 506899 * c(ESR1, SYNE1, CCDC170) 0.360026018509454 6 0.0527737308389948 1.22747166964064 254 0.46612495314345 3 2 1 -6.75711955717503 LTS-018 chr6 152447942 154476227 2028286 * c(SYNE1, IPCEF1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.32981127423743 26 0.047372582138422 1.05859068797796 1388 0.485679515073414 3 2 1 -7.03543346153842 LTS-018 chr6 154476228 167590641 13114414 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, AGPAT4, TULP4, NA NA NA NA NA NA NA NA NA LTS-018 ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.351130549587122 199 0.0871153415703394 0.975573038679278 6328 0.754791094042974 3 2 1 -6.90419102820872 LTS-018 NA NA NA NA LTS-018 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.655 1 NA NA NA NA NA LTS-018 chr6 167591885 167595668 3784 * TCP10L2 NA 0 NA 0.654218726285726 86 0.484194996388897 2 NA NA -5.76478500421998 LTS-018 chr6 167595669 170067349 2471681 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.342455293070574 64 0.0885144538013201 1.03467930372939 1454 0.454628563362718 3 2 1 -6.78620415452893 LTS-018 chr6 170067350 170068131 782 * WDR27 NA 0 NA 0.853 1 NA NA NA NA NA LTS-018 chr6 170068132 170713682 645551 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, LINC00574, FAM120B) 0.407890740506895 11 0.0634759797088631 0.93152063811781 475 0.5635096647999 2 1 1 -6.81096965502784 LTS-018 chr6 170713683 170893599 179917 * c(PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.904027410466863 205 0.187249359339175 2 NA NA -5.81338360420816 LTS-018 chr7 193047 193245 199 * FAM20C 0.483 1 NA 0.431380042290057 5 0.175602676517188 1 1 0 -5.76450765525324 LTS-018 chr7 193246 2769921 2576676 * c(WI2-2373I1.2, MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, EIF3B, ZFAND2A, COX19) 0.440675938282915 123 0.0610707088606399 0.836645086759231 3115 0.209567963947121 2 1 1 -6.85166561775468 LTS-018 chr7 2769922 2770067 146 * GNA12 0.346 1 NA 0.681388913953388 5 0.115735474250551 2 2 0 -5.76456837405585 LTS-018 chr7 2770068 5926027 3155960 * c(RBAK-RBAKDN, MIR4656, RNF216-IT1, SDK1, FOXK1, MMD2, SLC29A4, WIPI2, GNA12, RBAKDN, ZNF815P, RNF216P1, RNF216, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, CARD11, TNRC18, AP5Z1) 0.405996559233544 96 0.0932400316858158 0.828334999102767 2306 0.277381484977383 2 1 1 -6.79795658366259 LTS-018 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.544 1 NA NA NA NA NA LTS-018 chr7 5937950 5958596 20647 * CCZ1 0.390821931782933 2 0.0120208152801713 0.455943674311804 55 0.172650116206919 5 3 2 -7.89962363800737 LTS-018 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.079 1 NA NA NA NA NA LTS-018 chr7 5959444 6840712 881269 * c(ANKRD61, KDELR2, DAGLB, CCZ1B, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, CCZ1, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.404966593072512 48 0.0601093418590106 0.781088106805517 1447 0.253005958689081 2 1 1 -6.80841893030172 LTS-018 chr7 6840713 6844536 3824 * CCZ1B NA 0 NA 0.32 1 NA NA NA NA NA LTS-018 chr7 6844537 6863802 19266 * CCZ1B 0.333658260210915 2 0.0487903679018718 1.31273380068195 39 0.508870790851053 9 6 3 -6.79119528694686 LTS-018 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.788 1 NA NA NA NA NA LTS-018 chr7 6864270 8008782 1144513 * c(LOC100131257, GLCCI1, CCZ1B, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.406528426469992 12 0.0444794811393326 0.814057232865553 475 0.257231772240976 2 1 1 -6.85022614981095 LTS-018 chr7 8008783 8008840 58 * GLCCI1 NA 0 NA 1.404 1 NA NA NA NA NA LTS-018 chr7 8008841 12276045 4267205 * c(GLCCI1, PER4, THSD7A, NXPH1, ICA1, NDUFA4, TMEM106B, PHF14) 0.389029777989374 24 0.0616461971510685 1.0511687526651 808 0.249950467764174 3 2 1 -6.87591124945829 LTS-018 chr7 12276046 12276522 477 * TMEM106B 0.351 1 NA 1.13560750007902 9 0.13428514437569 3 3 0 -5.76444016919118 LTS-018 chr7 12276523 30876372 18599850 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, FERD3L, NA NA NA NA NA NA NA NA NA LTS-018 RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, ANKMY2, NPVF, WIPF3, LOC646762, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SP4, SNORD93, MIR550A1, TWIST1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.32490653072201 219 0.0867445776900161 1.05069049105762 8631 0.32627929690711 3 2 1 -6.97299560956267 LTS-018 NA NA NA NA LTS-018 chr7 30876373 31692957 816585 * c(INMT-FAM188B, ADCYAP1R1, CCDC129, GHRHR, AQP1, NEUROD6, FAM188B) 0.355345600048445 16 0.110572977410095 1.23392928737226 615 0.342365832856204 3 2 1 -6.80301759402439 LTS-018 chr7 31692958 31693077 120 * CCDC129 NA 0 NA 1.09 1 NA NA NA NA NA LTS-018 chr7 31693078 34989515 3296438 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.30600517248203 31 0.0954996481443724 1.10432964062953 1454 0.751787712663459 4 3 1 -6.91877208889806 LTS-018 chr7 34989516 34994303 4788 * DPY19L1 NA 0 NA 0.822 1 NA NA NA NA NA LTS-018 chr7 34994304 37991117 2996814 * c(MIR1200, AOAH-IT1, DPY19L1, KIAA0895, AOAH, GPR141, LOC401324, NME8, ANLN, EPDR1, DPY19L2P1, TBX20, HERPUD2, SFRP4, EEPD1, ELMO1, SEPT7) 0.3217712876771 39 0.0819644766871386 0.994566647667846 1303 0.330770091754232 3 2 1 -7.01646310530213 LTS-018 chr7 37991118 38402610 411493 * c(TRG-AS1, TARP, EPDR1, STARD3NL) 0.34593462081732 22 0.0618738592531164 1.39928239002027 192 0.971043357148179 6 4 2 -6.76558041499006 LTS-018 chr7 38402611 38402770 160 * TRG-AS1 NA 0 NA 0.897 1 NA NA NA NA NA LTS-018 chr7 38402771 43594452 5191682 * c(MIR3943, TRG-AS1, LOC100506895, POU6F2-AS1, POU6F2, MPLKIP, HECW1, VPS41, AMPH, GLI3, INHBA-AS1, FAM183BP, LINC00265, INHBA, PSMA2, YAE1D1, RALA, LOC646999, MRPL32, C7orf25, SUGCT, CDK13) 0.347609925749809 34 0.056344148778771 1.10184868030202 1700 0.411708640755946 3 2 1 -6.78719360850988 LTS-018 chr7 43594453 43601323 6871 * HECW1 NA 0 NA 1.522 1 NA NA NA NA NA LTS-018 chr7 43601324 44229000 627677 * c(URGCP-MRPS24, MIR4649, AEBP1, HECW1, LINC00957, GCK, POLM, SPDYE1, DBNL, RASA4CP, UBE2D4, PGAM2, POLD2, URGCP, COA1, MYL7, BLVRA, MRPS24, POLR2J4, STK17A) 0.423318899890861 29 0.0403775897459789 1.2528194347919 1091 0.636962380401732 4 2 2 -6.74397525148692 LTS-018 chr7 44229001 44240482 11482 * GCK NA 0 NA 0.499 1 NA NA NA NA NA LTS-018 chr7 44240483 48075030 3834548 * c(RAMP3, YKT6, ADCY1, PKD1L1, TMED4, NACAD, NUDCD3, SUN3, SNHG15, NPC1L1, HUS1, IGFBP1, IGFBP3, C7orf65, OGDH, DDX56, PPIA, PURB, MYO1G, SEPT7P2, TNS3, SNORA5B, SNORA5C, SNORA9, C7orf69, CAMK2B, CCM2, ZMIZ2, LINC00525, TBRG4, H2AFV) 0.360592750040594 61 0.0496761094188598 1.09374380254141 3021 0.239201265100759 3 2 1 -6.73743842059684 LTS-018 chr7 48075031 48081095 6065 * C7orf57 0.322 1 NA 0.971730697099523 15 0.185259586218134 3 3 0 -5.76574669760089 LTS-018 chr7 48081096 53934389 5853294 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, COBL, POM121L12, GRB10, VWC2, LINC01446, FIGNL1, UPP1) 0.342678354037602 49 0.0728754645496914 1.08537470920195 1642 0.420698102347885 3 2 1 -6.78442839120279 LTS-018 chr7 53934390 53934397 8 * character(0) NA 0 NA 1.142 1 NA NA NA NA NA LTS-018 chr7 53934398 55273106 1338709 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1) 0.307441297958705 9 0.125338319936261 1.27446178350775 361 0.353581837623483 4 3 1 -6.78491407467105 LTS-018 chr7 55273107 57532512 2259406 * c(LOC100130849, MIR3147, EGFR, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.324820184063163 31 0.0999217005287597 1.09880468092044 1079 0.367815027862454 3 2 1 -6.8254145557812 LTS-018 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.47101509589482 13 0.333742799787885 4 NA NA -5.76442668275599 LTS-018 chr7 62758725 63023528 264804 * ZNF733P 0.26 1 NA 0.993113532607356 7 0.125728543563769 3 3 0 -5.84567518856652 LTS-018 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.36090091444609 21 0.101874572742312 1.06753406075841 606 0.334578112211957 3 2 1 -6.73650688135962 LTS-018 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-018 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) 0.351996183150503 2 0.0014142135623731 0.671852924697341 93 0.167018238821728 6 4 2 -12.4335273245296 LTS-018 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 1.059 1 NA NA NA NA NA LTS-018 chr7 65159973 71250624 6090652 * c(MIR3914-1, MIR3914-2, MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, CALN1, TPST1) 0.344145051423091 35 0.0816949439411413 1.1098531988041 1365 0.326111377325587 3 2 1 -6.78312901149479 LTS-018 chr7 71250625 73096993 1846369 * c(MIR4650-1, TRIM50, SBDSP1, VPS37D, NSUN5P2, TBL2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, MLXIPL, LOC541473, NSUN5, NCF1B, FZD9, CALN1, DNAJC30, FKBP6, BAZ1B, BCL7B, POM121) 0.252283515482591 11 0.132369455416545 0.972991367736653 1008 0.460949506486327 3 2 1 -7.19672762523005 LTS-018 chr7 73096994 73097238 245 * DNAJC30 0.311 1 NA 0.652618975934125 7 0.212631136007876 2 2 0 -5.76453865693957 LTS-018 chr7 73097239 73108269 11031 * c(WBSCR22, DNAJC30) 0.339402359202205 3 0.073184697854128 0.859483730726585 53 0.202000736465628 3 2 1 -6.80947453980663 LTS-018 chr7 73108270 73108310 41 * WBSCR22 0.352 1 NA 0.628 1 NA NA NA NA NA LTS-018 chr7 73108311 77166995 4058685 * c(POM121C, PMS2P9, LOC100133091, MIR4284, MIR4651, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, CLDN4, CLDN3, SSC4D, WBSCR27, NSUN5P1, ABHD11-AS1, ELN, SRRM3, POMZP3, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, MDH2, DTX2P1-UPK3BP1-PMS2P11, STAG3L2, SPDYE5, STYXL1, PMS2P5, PMS2P3, GSAP, STAG3L1, POR, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, NA NA NA NA NA NA NA NA NA LTS-018 CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, ABHD11, TMEM120A, GTF2IRD2, GTF2IRD1) 0.408300736411371 75 0.053225622089806 0.706617993944182 2996 0.174597986167512 2 1 1 -7.76828540278083 LTS-018 NA NA NA NA LTS-018 chr7 77166996 77193113 26118 * PTPN12 NA 0 NA 0.451 1 NA NA NA NA NA LTS-018 chr7 77193114 77379200 186087 * c(APTR, RSBN1L, PTPN12) 0.341468785620887 2 0.0417193000900063 0.463704267771474 134 0.105732849810838 1 1 0 -10.0069353005047 LTS-018 chr7 77379201 77553114 173914 * c(RSBN1L, PHTF2, TMEM60) NA 0 NA 0.698540624869576 130 0.166489070733854 2 NA NA -5.82854798710744 LTS-018 chr7 77553115 77648671 95557 * c(PHTF2, MAGI2) 0.342143428516582 2 0.00212132034355961 0.942663672647066 146 0.222623728555211 12 8 4 -8.36422266865753 LTS-018 chr7 77648672 77756724 108053 * MAGI2 0.303 1 NA 0.906275395058055 27 0.240997978499874 2 2 0 -5.78296309134324 LTS-018 chr7 77756725 94049763 16293039 * c(MIR548M, MAGI2-AS3, MIR4652, MIR548AU, MAGI2-AS2, LOC101409256, AKAP9, CDK6, BET1, SEMA3A, SEMA3C, DBF4, TP53TG1, COL1A2, RUNDC3B, CYP51A1, SAMD9L, C7orf62, ZNF804B, KIAA1324L, SEMA3D, HEPACAM2, FAM133B, STEAP2, STEAP1, PCLO, GNAI1, GNG11, GNGT1, GRM3, HGF, GNAT3, RPL13AP17, LRRD1, DPY19L2P4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, ANKIB1, CROT, SAMD9, VPS50, SLC25A40, MIR489, GATAD1, SRI, MIR653, CACNA2D1, NA NA NA NA NA NA NA NA NA LTS-018 TMEM243, STEAP4, MTERF1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, GTPBP10, KRIT1, CLDN12, CD36, SEMA3E, MAGI2, DMTF1) 0.345094222331926 131 0.109990587330158 1.01033781613583 7133 0.295363300651896 3 2 1 -7.30004822544249 LTS-018 NA NA NA NA LTS-018 chr7 94049764 98890090 4840327 * c(MIR3609, LOC100506136, SLC25A13, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, SHFM1, TRRAP, MYH16, SGCE) 0.380477143971862 41 0.0719684382042641 1.06176331918626 3046 0.2536941976315 3 2 1 -6.78920346997992 LTS-018 chr7 98890091 98891660 1570 * MYH16 NA 0 NA 0.875 1 NA NA NA NA NA LTS-018 chr7 98891661 100549499 1657839 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA LTS-018 MEPCE, AZGP1, SLC12A9, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, TRIP6, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.353599421051159 53 0.099951791717979 0.988515242184527 4623 0.215360129569777 3 2 1 -6.92785649913246 LTS-018 NA NA NA NA LTS-018 chr7 100549500 100549573 74 * character(0) 0.283 1 NA 1.484 1 NA NA NA NA NA LTS-018 chr7 100549574 100550504 931 * character(0) 0.344368607769434 37 0.108629940458255 1.76840885789831 58 0.582034568266342 9 6 3 -6.73341124495247 LTS-018 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.268 1 NA NA NA NA NA LTS-018 chr7 100550727 100551118 392 * character(0) 0.262922842492677 10 0.101792872485695 0.679028534590952 40 0.328389191200679 12 9 3 -6.73944156450306 LTS-018 chr7 100551119 100552867 1749 * character(0) 0.341233434765191 62 0.0764443663212194 1.97754604900249 98 0.856721068779519 12 8 4 -6.73366453908527 LTS-018 chr7 100552868 100552886 19 * character(0) NA 0 NA 1.259 1 NA NA NA NA NA LTS-018 chr7 100552887 102016728 1463842 * c(LOC100289561, MIR4285, MIR4653, LOC100630923, MUC12, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, SPDYE6, VGF, TRIM56, PLOD3, MYL10) 0.387430817827354 57 0.0611229091672072 1.01967416704245 1756 0.225597779472913 3 2 1 -6.88945230250343 LTS-018 chr7 102016729 116596732 14580004 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR3666, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, POLR2J2, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NA NA NA NA NA NA NA NA NA LTS-018 NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, LRRN3, ALKBH4, POLR2J3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, PRKRIP1, ST7, CBLL1, ORAI2, CAPZA2, ARMC10, IMMP2L, CAV1, CAV2, ST7-AS1, FOXP2, PMPCB, DOCK4) 0.335848598018253 129 0.0764481555970191 0.955174796095117 7201 0.564223599914531 3 2 1 -7.24237967933635 LTS-018 NA NA NA NA LTS-018 chr7 116596733 136704531 20107799 * c(LOC100130705, SMKR1, RNA5SP244, AASS, FAM3C, CFTR, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, ASZ1, ASB15, FEZF1-AS1, IQUB, C7orf77, MGC27345, RNF133, ZNF800, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POT1, HYALP1, SLC13A4, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, GPR37, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, STRA8, LOC349160, IMPDH1, IRF5, NA NA NA NA NA NA NA NA NA LTS-018 KCND2, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, CNOT4, NRF1, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, PODXL, ING3, CHCHD3, RBM28, TMEM140, METTL2B, ANKRD7, AKR1B10, MIR490, STRIP2, PTPRZ1, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, SLC13A1, SMO, SPAM1, BPGM, MIR592, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MIR593, TMEM229A, UBE2H, WNT2, LUZP6, C7orf49, GCC1, ST7, CPED1, CALD1, CALU, CTTNBP2, FAM71F1, SLC35B4, TMEM209, WASL, PLXNA4, ATP6V1F, ST7-AS2, ST7-OT3, CADPS2, CPA5, CEP41) 0.371721896129303 223 0.0831941463563456 1.03168327949509 10163 0.282238586661144 3 2 1 -7.12792929791654 LTS-018 NA NA NA NA LTS-018 chr7 136704532 136921062 216531 * c(LOC349160, PTN) 0.316 1 NA 1.03553234903539 33 0.516902824816261 3 3 0 -5.76556335721506 LTS-018 chr7 136921063 137075523 154461 * c(PTN, DGKI) 0.239788775067435 3 0.234718980911216 1.13951604632945 75 0.559664410385592 4 3 1 -6.76993040510869 LTS-018 chr7 137075524 140434278 3358755 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, MIR4468, C7orf55-LUC7L2, SVOPL, CLEC2L, FMC1, TMEM213, MKRN1, UBN2, DENND2A, HIPK2, KLRG2, RAB19, NDUFB2, ATP6V0A4, LUC7L2, ZC3HAV1, KIAA1549, PARP12, CREB3L2, AKR1D1, BRAF, TBXAS1, TTC26, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.337476746078175 66 0.0847820969468435 0.972501154313474 3375 0.256657026131528 3 2 1 -7.14968508890849 LTS-018 chr7 140434279 140507869 73591 * BRAF NA 0 NA 2.10189832065462 74 0.777586834787569 7 NA NA -5.76474911144195 LTS-018 chr7 140507870 143305429 2797560 * c(MOXD2P, MTRNR2L6, TMEM178B, CLCN1, OR9A4, OR9A2, C7orf34, TMEM139, PRSS37, PRSS58, PRSS3P2, EPHA1, EPHB6, CLEC5A, TAS2R39, TAS2R40, TAS2R41, WEE2-AS1, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, WEE2, TAS2R3, TAS2R4, MRPS33, PIP, TAS2R5, TRPV6, AGK, TRPV5, PRSS1, KIAA1147, TAS2R38, BRAF, SSBP1, NA, ZYX, CASP2, MGAM, OR6W1P, MGAM2, FAM131B) 0.295717581343388 92 0.115279825325554 1.00623009599067 3237 0.71808830917587 3 2 1 -6.95642534695837 LTS-018 chr7 143305430 143321183 15754 * TCAF2 NA 0 NA 0.263806310421968 43 0.287172798062149 0 NA NA -5.76919129991752 LTS-018 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.358 1 NA NA NA NA NA LTS-018 chr7 143400289 143633298 233010 * c(OR2F2, LOC154761, TCAF2, CTAGE6, TCAF1) NA 0 NA 1.14994581185593 120 0.392166626875993 3 NA NA -5.767269127489 LTS-018 chr7 143633299 143840031 206733 * c(OR2A14, OR6B1, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2) NA 0 NA 0.792696579331307 153 0.116158902779229 2 NA NA -5.76462024616136 LTS-018 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.432 1 NA NA NA NA NA LTS-018 chr7 143883365 144072694 189330 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.328277361028567 3 0.0242693221990232 0.510921389742636 153 0.24578131999471 3 2 1 -8.73429152486473 LTS-018 chr7 144072695 144074199 1505 * ARHGEF5 NA 0 NA 0.621 1 NA NA NA NA NA LTS-018 chr7 144074200 144096493 22294 * c(NOBOX, ARHGEF5) 0 1 NA 0.810975367074598 49 0.618923327952949 2 2 0 -5.7644214684761 LTS-018 chr7 144096494 144462951 366458 * c(NOBOX, TPK1) 0.473 1 NA 0.794642124000504 127 0.17238381008016 2 2 0 -5.7644502871893 LTS-018 chr7 144462952 158930775 14467824 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, ZNF786, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, NA NA NA NA NA NA NA NA NA LTS-018 GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, VIPR2, XRCC2, MIR671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.437148947868804 272 0.0602628151431154 0.792809028133302 9390 0.400024589917199 2 1 1 -6.75484719775598 LTS-018 NA NA NA NA LTS-018 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 0.745030664062384 19 0.127979530527027 2 NA NA -5.77992580354839 LTS-018 chr8 182757 182934 178 * ZNF596 0.178 1 NA 0.517918123696172 3 0.207928673667999 1 1 0 -5.7644115174127 LTS-018 chr8 182935 7272582 7089648 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.197249524995715 77 0.0690964881547874 0.532312349416901 2304 0.183547134836311 1 1 0 -7.07617060032953 LTS-018 chr8 7272583 7340195 67613 * DEFB4B 0.389 1 NA 0.114905431275464 41 0.132142365946916 0 0 0 -6.56124203358536 LTS-018 chr8 7340196 7698739 358544 * c(DEFB107A, FAM90A7P, FAM90A10P, DEFB107B) 0.25 1 NA 0.258999877397281 44 0.0777297419955687 0 0 0 -6.79589530940426 LTS-018 chr8 7698740 7717830 19091 * SPAG11A NA 0 NA 0.458 1 NA NA NA NA NA LTS-018 chr8 7717831 22069304 14351474 * c(NAT2, LOC100128993, FAM66E, ZNF705B, FAM66D, FAM66A, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, DEFB4A, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, FAM86B3P, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, NA NA NA NA NA NA NA NA NA LTS-018 USP17L8, LOC392196, USP17L7, LPL, MIR124-1, ASAH1, MSR1, MSRA, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, SFTPC, USP17L3, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MFHAS1, RP1L1) 0.211070776586389 228 0.0721735017566938 0.528691568245153 7086 0.318324130901748 1 1 0 -6.89573698612927 LTS-018 NA NA NA NA LTS-018 chr8 22069305 22069384 80 * BMP1 NA 0 NA 0.349 1 NA NA NA NA NA LTS-018 chr8 22069385 28423958 6354574 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, LOC100507156, SORBS3, PNMA2, ADAM28, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, EGR3, R3HCC1, EPHX2, PTK2B, TRIM35, RHOBTB2, SLC39A14, LOC254896, ADAMDEC1, GNRH1, LOC286059, SCARA5, LOC389641, NUGGC, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2R2A, CCDC25, PPP3CC, PBK, ZNF395, BIN3, CCAR2, NA NA NA NA NA NA NA NA NA LTS-018 PDLIM2, EBF2, BMP1, POLR3D, BNIP3L, STC1, FZD3, DOCK5, BIN3-IT1, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4, PHYHIP) 0.210708599870267 140 0.0719303019966116 0.505790757445893 6042 0.441253804511854 1 1 0 -6.73349200261016 LTS-018 NA NA NA NA LTS-018 chr8 28423959 28427578 3620 * FZD3 NA 0 NA 0.703851222572678 76 0.285399997233799 2 NA NA -5.76481772265222 LTS-018 chr8 28427579 39142444 10714866 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, DUSP4, EIF4EBP1, HTRA4, ADAM32, EXTL3, FGFR1, DDHD2, KIF13B, LEPROTL1, ADGRA2, LSM1, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, C8orf86, SARAF, WHSC1L1, PPP2CB, BRF2, INTS9, TEX15, PLEKHA2, LINC00589, MBOAT4, STAR, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, ZNF703, TTI2, NA NA NA NA NA NA NA NA NA LTS-018 RAB11FIP1, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ASH2L, BAG4) 0.2162798911263 47 0.0682430900088064 0.509941863972081 5631 0.136080399174532 1 1 0 -6.75796096991702 LTS-018 NA NA NA NA LTS-018 chr8 39142445 39349526 207082 * c(ADAM3A, ADAM5) NA 0 NA 0.111183353213063 57 0.0468779075957042 0 NA NA -12.4227757916076 LTS-018 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.55 1 NA NA NA NA NA LTS-018 chr8 39442068 39695535 253468 * c(ADAM2, ADAM18) 0.174 1 NA 0.549239484833455 185 0.161075255200288 1 1 0 -5.80398865703635 LTS-018 chr8 39695536 39695819 284 * ADAM2 NA 0 NA 0.51194596525346 5 0.0102567051239665 1 NA NA -5.76464753533379 LTS-018 chr8 39695820 39770766 74947 * character(0) NA 0 NA 1.194 1 NA NA NA NA NA LTS-018 chr8 39770767 39862881 92115 * c(IDO2, IDO1) 0.424 1 NA 0.890763646270751 113 0.200306104640517 2 2 0 -5.78159618498922 LTS-018 chr8 39862882 42552553 2689672 * c(AP3M2, SMIM19, GPAT4, NKX6-3, IDO2, DKK4, ANK1, IKBKB, GOLGA7, PLAT, POLB, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, GINS4) 0.414455314959109 48 0.133168225010632 0.809978309967214 1890 0.191829690802986 2 1 1 -6.74982838584621 LTS-018 chr8 42552554 42552633 80 * CHRNB3 0.36 1 NA 2.51 1 NA NA NA NA NA LTS-018 chr8 42552634 43197080 644447 * c(MIR4469, CHRNB3, HGSNAT, FNTA, POTEA, THAP1, RNF170, POMK, HOOK3, CHRNA6) 0.0987372818144241 3 0.144337567297406 1.09555853261888 727 0.416532251081833 3 3 0 -6.73316205288027 LTS-018 chr8 43197081 43212050 14970 * POTEA NA 0 NA 1.0963365139132 11 0.175065130737106 3 NA NA -5.76443058477184 LTS-018 chr8 47752736 48511457 758722 * c(LOC100287846, SPIDR, LINC00293) 0 1 NA 1.65111009046371 167 0.735082746682369 5 5 0 -5.76450429168695 LTS-018 chr8 48511458 49987214 1475757 * c(CEBPD, SPIDR, MCM4, C8orf22, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.239188877434123 2 0.00777817459305205 1.66840491901371 903 0.362669892767604 5 4 1 -6.73487055835363 LTS-018 chr8 49987215 49987315 101 * C8orf22 NA 0 NA 3.342 1 NA NA NA NA NA LTS-018 chr8 49987316 57870913 7883598 * c(SBF1P1, LINC00968, LYPLA1, XKR4, PCMTD1, TMEM68, PXDNL, SDR16C5, SNORD54, NPBWR1, MRPL15, FAM150A, LYN, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, RP1, RPS20, SOX17, TCEA1, CHCHD7, RGS20, TGS1, ST18, RB1CC1) 0.188316715210819 55 0.070242283926268 2.25325475133254 2628 0.622152618584031 7 6 1 -6.74831302870262 LTS-018 chr8 57870914 57871010 97 * IMPAD1 NA 0 NA 1.849 1 NA NA NA NA NA LTS-018 chr8 57871011 63891461 6020451 * c(LOC100130298, LINC01606, MIR4470, UBXN2B, CLVS1, CYP7A1, LINC00588, LOC286177, NKAIN3, ASPH, IMPAD1, CHD7, RAB2A, SDCBP, UG0898H09, CA8, NSMAF, FAM110B, TOX) 0.207027678984952 45 0.0677483310763916 1.77497060789353 1711 0.555564304694028 6 5 1 -6.84700480027948 LTS-018 chr8 63891462 67972815 4081354 * c(TCF24, MIR124-2HG, LINC00967, RRS1-AS1, C8orf44-SGK3, YTHDF3-AS1, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, MIR124-2, MYBL1, PDE7A, ARMC1, LINC00251, C8orf44, SNHG6, SNORD87, UG0898H09, TTPA, VCPIP1, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.266258322494351 32 0.112347961780039 1.28944900311946 1859 0.441119373130782 4 3 1 -6.81240967588585 LTS-018 chr8 67972816 67973598 783 * COPS5 NA 0 NA 2.135 1 NA NA NA NA NA LTS-018 chr8 67973599 69103988 1130390 * c(ARFGEF1, COPS5, CPA6, CSPP1, PREX2) 0.355020555231459 4 0.0313408678884296 1.41511376296391 742 0.304621988661846 3 2 1 -7.25198235368342 LTS-018 chr8 69103989 69621347 517359 * c(C8orf34, C8orf34-AS1, PREX2) 0.19189023394959 12 0.0326230769780404 2.47280272159281 359 0.671213434543166 6 5 1 -6.84338673891333 LTS-018 chr8 69621348 69688537 67190 * C8orf34 NA 0 NA 1.447 1 NA NA NA NA NA LTS-018 chr8 69688538 69731268 42731 * C8orf34 0.345283865548548 3 0.0621798466814878 1.26539298718723 58 0.271557244914544 3 2 1 -6.79540129403323 LTS-018 chr8 70476003 82570306 12094304 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, MIR5708, MIR5681A, MIR5681B, LOC101241902, NCOA2, STMN2, RDH10, SBSPON, EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, STAU2, LACTB2-AS1, MRPS28, HNF4G, IL7, IMPA1, XKR9, LOC392232, MIR2052HG, PI15, ZC2HC1A, LACTB2, PMP2, GDAP1, TMEM70, UBE2W, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, PRDM14, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, ZFHX4, SLCO5A1, NA NA NA NA NA NA NA NA NA LTS-018 CRISPLD1, TRPA1, MSC, KCNB2) 0.158311685755955 59 0.0612809398947931 2.29355688402548 4381 1.10147111143217 7 6 1 -6.79109709728606 LTS-018 NA NA NA NA LTS-018 chr8 82570307 92408904 9838598 * c(C8orf88, LRRC69, REXO1L2P, MIR4661, LINC00534, WWP1, SLC26A7, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ATP6V0D2, REXO1L1P, SLC10A5, IMPA1, CA13, C8orf59, MMP16, NBN, RMDN1, OTUD6B, CNGB3, TMEM55A, SNX16, NECAB1, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, RIPK2, CPNE3, CHMP4C) 0.200965474232699 70 0.0763215438380948 1.847618498724 3063 0.640088690123489 6 5 1 -6.78290954721778 LTS-018 chr8 92408905 93929199 1520295 * c(SLC26A7, TRIQK, FLJ46284, RUNX1T1) 0.304 1 NA 1.91479061440675 339 0.692227167013421 6 6 0 -5.76541866274468 LTS-018 chr8 93929200 94433117 503918 * c(TRIQK, C8orf87, LINC00535) 0.22973426785593 2 0.00777817459305201 1.88984205778483 53 0.418616097235906 5 4 1 -7.47476210383787 LTS-018 chr8 94433118 94712791 279674 * c(FAM92A1, LINC00535) NA 0 NA 1.455 1 NA NA NA NA NA LTS-018 chr8 94712792 98865211 4152420 * c(LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, C8orf37-AS1, FSBP, CDH17, CPQ, FAM92A1, NDUFAF6, C8orf37, RAD54B, KIAA1429, GEM, DPY19L4, RBM12B, GDF6, MTERF3, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, LINC01298, SDC2, UQCRB, PLEKHF2, TSPYL5, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.260951870626531 41 0.0873554345831987 1.36031922792891 2715 0.34629975723458 4 3 1 -6.79761764282916 LTS-018 chr8 98865212 99306296 441085 * c(RIDA, POP1, ERICH5, SNORA72, MATN2, RPL30, NIPAL2) 0.148388268040159 7 0.0322977221664757 1.13810746425278 479 0.256135683309507 2 2 0 -7.30708429067879 LTS-018 chr8 99306297 100883889 1577593 * c(MIR875, OSR2, VPS13B, KCNS2, STK3, MIR599, NIPAL2) 0.292548856747739 3 0.0277308492477241 1.38497545867359 580 0.303423418668314 4 3 1 -6.74320551314801 LTS-018 chr8 100883890 100887625 3736 * VPS13B NA 0 NA 1.25 1 NA NA NA NA NA LTS-018 chr8 100887626 104053252 3165627 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.30221243058935 15 0.0483658675395898 1.25637960911102 1801 0.284408472322607 4 3 1 -6.97146788129743 LTS-018 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.52 1 NA NA NA NA NA LTS-018 chr8 104054528 123683681 19629154 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, MTBP, ANGPT1, MRPL13, LRP12, HAS2, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRHR, TRPS1, COL14A1, DSCC1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, NA NA NA NA NA NA NA NA NA LTS-018 EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.276456886955506 109 0.0727797378948716 1.41452899618955 5621 1.70177770372951 4 3 1 -6.75354037908397 LTS-018 NA NA NA NA LTS-018 chr8 123683682 128100650 4416969 * c(LINC00861, FAM83A-AS1, ZHX1-C8orf76, MIR4663, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.279269203106077 61 0.0939561198593066 1.26968643204752 2430 0.433348548085602 4 3 1 -6.83244813586197 LTS-018 chr8 128100651 128427658 327008 * CASC8 NA 0 NA 2.167 1 NA NA NA NA NA LTS-018 chr8 128427659 131064447 2636789 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MIR5194, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977) 0.211743639537482 3 0.0169213868619961 2.07581431682517 319 0.495086333454471 6 5 1 -6.89822669907605 LTS-018 chr8 131064448 132054152 989705 * c(ASAP1-IT2, ADCY8, ASAP1-IT1, ASAP1) 0.303520242493613 8 0.059199270024457 1.26648634323084 354 0.266054087531761 4 3 1 -6.82808792707414 LTS-018 chr8 132054153 132054651 499 * character(0) NA 0 NA 1.31021856220565 13 0.199057104292288 4 NA NA -5.7644292848663 LTS-018 chr8 132916302 133047071 130770 * c(EFR3A, OC90) 0.181 1 NA 1.83411324665554 205 0.413583646803059 6 6 0 -5.76641158500853 LTS-018 chr8 133047072 133076410 29339 * c(HHLA1, OC90) 0.15102622564575 3 0.127996093690394 2.0578793451277 56 1.14547285293811 8 7 1 -6.73486718270784 LTS-018 chr8 133076411 133078034 1624 * HHLA1 NA 0 NA 2.422 1 NA NA NA NA NA LTS-018 chr8 133078035 133117491 39457 * HHLA1 0.159736186844591 6 0.0311897419033887 2.78282325549433 103 1.13424340930653 14 12 2 -6.73727750177297 LTS-018 chr8 133117492 135670079 2552588 * c(HHLA1, NDRG1, TMEM71, LRRC6, KCNQ3, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1, HPYR1) 0.158425451144611 42 0.0535180237096683 2.15303147849461 1493 0.503181854370308 7 6 1 -6.81695396252751 LTS-018 chr8 135670080 135725065 54986 * ZFAT NA 0 NA 1.226 1 NA NA NA NA NA LTS-018 chr8 135725066 141407870 5682805 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, TRAPPC9) 0.278823361058702 12 0.0398675838548594 1.40208853306618 872 0.461810238065832 4 3 1 -6.77656021995082 LTS-018 chr8 141407871 146231140 4823270 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, NA NA NA NA NA NA NA NA NA LTS-018 WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.193969218006948 230 0.0592751272144093 1.96259027122034 8148 0.434803991000512 6 5 1 -6.7480939014352 LTS-018 NA NA NA NA LTS-018 chr8 146231141 146280905 49765 * c(ZNF252P-AS1, C8orf33) NA 0 NA 1.69309592722425 55 0.321632748512686 5 NA NA -5.76447114691945 LTS-018 chr9 14732 14764 33 * WASH1 0.396 1 NA 0.502 1 NA NA NA NA NA LTS-018 chr9 14765 8437286 8422522 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.307344314030491 76 0.122297052079633 1.11526506076642 4037 0.356488492841207 3 2 1 -6.88518174891445 LTS-018 chr9 8437287 8449652 12366 * PTPRD NA 0 NA 1.176 1 NA NA NA NA NA LTS-018 chr9 8449653 14617758 6168106 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.321532473441146 13 0.0465517357631711 1.23532180494588 861 0.32063698184956 4 3 1 -7.41449251377878 LTS-018 chr9 14617759 26116924 11499166 * c(CDKN2B-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, ELAVL2, CCDC171, SLC24A2, TUSC1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MIR31, MLLT3, LINC01239, MTAP, CDKN2A-AS1, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, NA NA NA NA NA NA NA NA NA LTS-018 DENND4C, KLHL9, MIR491, RPS6, DMRTA1, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.324063761807655 108 0.0782179836067228 1.1275635363029 3989 0.324423932920715 3 2 1 -6.97195484259577 LTS-018 NA NA NA NA LTS-018 chr9 26116925 28889000 2772076 * c(MIR876, MIR873, LOC100506422, LINC00032, LINGO2, C9orf72, EQTN, IFNK, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.407444963342924 17 0.0492860050533379 0.929972860024583 994 0.217265223834575 2 1 1 -7.56155145786832 LTS-018 chr9 30558630 34725289 4166660 * c(SNORD121A, TOPORS-AS1, SNORD121B, TOPORS, SIGMAR1, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, ENHO, TMEM215, CNTFR-AS1, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, UBAP1, CHMP5, APTX, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, CCL19, CCL21, NOL6, C9orf24) 0.323246946813468 64 0.0662388580028657 1.0835989377692 3236 0.278286154740017 3 2 1 -6.95322555342503 LTS-018 chr9 34725290 34726307 1018 * FAM205A NA 0 NA 0.511077272798939 48 0.480173195703738 1 NA NA -5.764410422537 LTS-018 chr9 34726308 34833887 107580 * c(FAM205A, FAM205BP) NA 0 NA 1.11956933439025 96 0.227656943166533 3 NA NA -5.76548084702858 LTS-018 chr9 34833888 34835110 1223 * FAM205BP 0.412 1 NA 0.624432219614595 53 0.446465278109429 1 1 0 -5.76457350655906 LTS-018 chr9 34835111 40498570 5663460 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, POLR1E, SHB, HRCT1, NA, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, NA NA NA NA NA NA NA NA NA LTS-018 CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.317508241934462 93 0.0953883820573032 1.07903828259398 4898 0.298093886348947 3 2 1 -6.87497177210599 LTS-018 NA NA NA NA LTS-018 chr9 40498571 40498669 99 * c(ZNF658B, NA) NA 0 NA 0.852 1 NA NA NA NA NA LTS-018 chr9 40498670 43861081 3362412 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) 0.136336734202246 3 0.199505221318474 0.821959413233284 74 0.8762027769689 2 2 0 -6.73565376462209 LTS-018 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.05128197831268 8 0.355260367296197 3 NA NA -5.76609923911017 LTS-018 chr9 65602571 66457106 854536 * LOC286297 0.278 1 NA 1.03743523749058 3 0.0529181758314979 3 3 0 -6.14184036147247 LTS-018 chr9 66457107 69256833 2799727 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6) 0.330461500902595 25 0.0916786416420604 1.06290380293368 81 0.533588540791683 3 2 1 -6.81569668910564 LTS-018 chr9 69256834 70731724 1474891 * c(LOC100133920, CBWD6, FOXD4L5, ANKRD20A4) NA 0 NA 1.03556379175797 3 0.125285008414149 3 NA NA -5.89509416994922 LTS-018 chr9 70731725 70862960 131236 * character(0) NA 0 NA 0.547 1 NA NA NA NA NA LTS-018 chr9 70862961 71152343 289383 * c(TMEM252, FOXD4L3, PGM5, PGM5-AS1) 0.157 1 NA 0.771048093415681 93 0.185345339328129 2 2 0 -5.76973434753804 LTS-018 chr9 71152344 80645385 9493042 * c(VPS13A-AS1, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, TMEM252, ALDH1A1, SMC5, VPS13A, TMEM2, FXN, MAMDC2, GCNT1, OSTF1, GNAQ, ANXA1, APBA1, PTAR1, MIR204, FOXB2, C9orf135-AS1, PCA3, ABHD17B, PCSK5, NMRK1, C9orf40, RFK, PRKACG, RORB, RPSAP9, KLF9, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA, GNA14) 0.143118512429398 91 0.0627042226330854 0.75301397580133 4721 0.225229682694261 2 2 0 -7.07729105457247 LTS-018 chr9 80645386 80645394 9 * GNAQ NA 0 NA 1.161 1 NA NA NA NA NA LTS-018 chr9 80645395 80945036 299642 * c(GNAQ, PSAT1, CEP78) 0.125057331155521 7 0.0348274658990915 0.996740241883071 344 0.310060600905665 2 2 0 -6.87520167558125 LTS-018 chr9 82006168 100057325 18051158 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, LOC100507346, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, SLC35D2, CKS2, PTPDC1, ANKRD19P, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF782, LOC158434, LOC158435, DAPK1, ZNF169, ECM2, NA NA NA NA NA NA NA NA NA LTS-018 S1PR3, AAED1, ZNF367, SUSD3, FANCC, FBP1, ZNF510, HABP4, FAM120A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, UBQLN1, HNRNPK, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, NUTM2F, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, PTCH1, LOC100499484-C9ORF174, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, TLE1, TLE4, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, CDC14B, FBP2, FGD3) 0.130168478800309 115 0.0610454145633127 0.756059328890266 9074 0.237535089399604 2 2 0 -7.21741933939085 LTS-018 NA NA NA NA LTS-018 chr9 100057326 100057871 546 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 1.197 1 NA NA NA NA NA LTS-018 chr9 100057872 100616041 558170 * c(CCDC180, LOC100499484, TSTD2, FOXE1, TDRD7, LOC286359, NCBP1, LOC100499484-C9ORF174, TMOD1, XPA) 0.142614551793132 10 0.0327861759486118 0.963472610219244 698 0.241601153298196 2 2 0 -6.96526088792528 LTS-018 chr9 100616042 100616583 542 * FOXE1 0.088 1 NA 0.864008000639119 13 0.275006922989782 2 2 0 -5.76443854574945 LTS-018 chr9 100616584 100850000 233417 * c(ANP32B, FOXE1, TRMO, NANS, HEMGN, TRIM14) 0.0863935967570197 9 0.0216801240258855 0.945327482728848 379 0.277644900002019 3 3 0 -6.9649081992013 LTS-018 chr9 100850001 101470860 620860 * c(TBC1D2, CORO2A, GABBR2, TRIM14) 0.0816989666028027 15 0.0346311173038683 1.18950081058362 423 0.423452467861584 4 4 0 -6.78394490151552 LTS-018 chr9 101470861 103349484 1878624 * c(MSANTD3-TMEFF1, NAMA, SEC61B, COL15A1, ANKS6, ERP44, INVS, MURC, STX17-AS1, TEX10, STX17, TGFBR1, GALNT12, NR4A3, ALG2, TMEFF1, MSANTD3, GABBR2) 0.103686616119993 23 0.0233166042043123 0.902742596364259 1425 0.271862680644009 3 3 0 -7.2428179146404 LTS-018 chr9 103349485 117074810 13725326 * c(FAM225B, MIR548Q, MIR3134, MIR4668, SMC2, ACTL7B, ACTL7A, AKAP2, KIF12, PALM2, WDR31, ZNF618, GRIN3A, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ZNF483, C9orf84, KIAA1958, ZNF883, ABCA1, LPAR1, ALAD, FKTN, ALDOB, PTGR1, FKBP15, KIAA0368, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, GNG10, FAM225A, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, NA NA NA NA NA NA NA NA NA LTS-018 SNX30, MIR32, PALM2-AKAP2, MUSK, POLE3, MRPL50, EPB41L4B, BSPRY, DNAJC25, PLPPR1, FAM206A, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, MIR455, SUSD1, LRRC37A5P, TAL2, TXN, UGCG, ZFP37, ZNF189, SVEP1, HDHD3, FSD1L, HSDL2, TMEM246, IKBKAP, COL27A1, CTNNAL1, PRPF4, KLF4, PTBP3) 0.110435737180383 166 0.0445667542269943 0.964984538981023 8892 1.1387256928582 3 3 0 -6.8612204365572 LTS-018 NA NA NA NA LTS-018 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.33 1 NA NA NA NA NA LTS-018 chr9 117085363 117089956 4594 * ORM1 0.159863086231777 3 0.0646322932699539 0.368715382925843 42 0.25475993573327 2 2 0 -6.84486495675308 LTS-018 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.024 1 NA NA NA NA NA LTS-018 chr9 117092173 136243516 19151344 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100272217, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100505478, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, CELP, POMT1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, AK8, OR1Q1, TTLL11, TTC16, BRINP1, STKLD1, OLFML2A, NA NA NA NA NA NA NA NA NA LTS-018 DNM1, TOR1A, MEGF9, ENDOG, ENG, AK1, TMEM268, NAIF1, STOM, DOLK, TRIM32, FNBP1, SETX, ZBTB43, ASTN2, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, WHRN, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, GSN, PKN3, SLC2A8, OBP2B, ST6GALNAC6, HSPA5, TNC, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, BARHL1, SH3GLB2, PSMB7, PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, LINC00474, RALGDS, PRDM12, RPL7A, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TLR4, TRAF1, TSC1, C5, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, AKNA, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C5, GTF3C4, LHX2, TNFSF8, MED27, PTGES, ATP6V1G1, RALGPS1, TNFSF15) 0.108751259569616 396 0.049137089528367 0.952936443749627 19036 0.348317432340705 3 3 0 -8.06866704057452 LTS-018 NA NA NA NA LTS-018 chr9 136243517 136245820 2304 * STKLD1 NA 0 NA 1.608 1 NA NA NA NA NA LTS-018 chr9 136245821 137658365 1412545 * c(RNU6ATAC, MIR4669, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, DBH, STKLD1, SARDH, LINC00094, TMEM8C, REXO4, RXRA, FAM163B, VAV2, BRD3, ADAMTSL2) 0.101924657892696 71 0.0326854159910971 1.01483028469087 1548 0.25135101896497 3 3 0 -6.80081790955701 LTS-018 chr9 137658366 137658727 362 * COL5A1 NA 0 NA 0.938 1 NA NA NA NA NA LTS-018 chr9 137658728 139380452 1721725 * c(LINC01502, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, UBAC1, OLFM1, SDCCAG3, COL5A1, NACC2, C9orf116, CAMSAP1, C9orf62, C9orf163, QSOX2, FCN1, FCN2, PMPCA, GPSM1, DKFZP434A062, OBP2A, GLT6D1, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, INPP5E, KCNT1, CARD9, SNAPC4, DNLZ, LHX3, C9orf69, PPP1R26, SEC16A) 0.107491196379808 135 0.0388714696832322 0.947964733197844 2879 1.17948194440318 3 3 0 -6.77538441404654 LTS-018 chr9 139380453 139388857 8405 * C9orf163 NA 0 NA 1.084 1 NA NA NA NA NA LTS-018 chr9 139388858 139760806 371949 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, AGPAT2, LCN8, FAM69B, MAMDC4, LCN6, PHPT1, LCN15, C9orf172, MIR126, LCN10, NOTCH1, EGFL7, RABL6, SNORA17A, SNORA17B, CCDC183, SNHG7, TMEM141, EDF1) 0.0900917066762471 25 0.025617376914899 1.19036391313467 1053 0.272978928731701 3 3 0 -6.82936022084431 LTS-018 chr9 139760807 139780852 20046 * TRAF2 NA 0 NA 0.766 1 NA NA NA NA NA LTS-018 chr9 139780853 139973629 192777 * c(MIR4479, ABCA2, FUT7, LCN12, C9orf142, LCNL1, C9orf139, FBXW5, NPDC1, PTGDS, TRAF2, C8G, SAPCD2, CLIC3, UAP1L1, ENTPD2) 0.092281006351316 14 0.0291830147799769 0.971551084149764 995 0.468517212442136 3 3 0 -6.77140655250688 LTS-018 chr9 139973630 139973820 191 * UAP1L1 0.137 1 NA 0.719632035448459 3 0.631355156257818 2 2 0 -5.76441307995278 LTS-018 chr9 139973821 139997791 23971 * c(MAN1B1-AS1, MAN1B1, UAP1L1) 0.277148661398916 9 0.130642110787874 1.02645414474915 162 0.242545178312693 4 3 1 -6.75907404396467 LTS-018 chr9 139997792 140001978 4187 * MAN1B1 0.098 1 NA 0.984638815076122 23 0.144553462626505 3 3 0 -5.76559035585321 LTS-018 chr9 140001979 140357848 355870 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, MAN1B1, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, RNF224, RNF208, SSNA1, TMEM203) 0.0962143046589731 26 0.0280653084512096 0.950419626801946 1442 0.223636237521826 3 3 0 -6.81519538845652 LTS-018 chr9 140357849 140395253 37405 * PNPLA7 0.082 1 NA 1.04198675230802 67 0.201679293219291 3 3 0 -5.76540616966646 LTS-018 chr9 140395254 141070283 675030 * c(ZMYND19, PNPLA7, EHMT1-IT1, TUBBP5, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.209778381559309 9 0.138624292403765 0.942614691822551 775 0.223772860724067 2 2 0 -7.12337279977592 LTS-018 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.595865150215604 5 0.293197373794514 1 NA NA -5.76468675516873 LTS-018 chr10 94832 95353 522 * TUBB8 0.409 1 NA 0.905058537807676 7 0.244959666262097 2 2 0 -5.76449519114814 LTS-018 chr10 95354 18060381 17965028 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, IL2RA, IL15RA, NA NA NA NA NA NA NA NA NA LTS-018 ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.391036243644394 243 0.0726167618104839 0.955153780249463 8886 0.308561108980216 3 2 1 -8.28562579840821 LTS-018 NA NA NA NA LTS-018 chr10 18060382 18085856 25475 * c(MRC1, NA, TMEM236) NA 0 NA 0.428 1 NA NA NA NA NA LTS-018 chr10 18085857 18196475 110619 * c(MRC1, NA, TMEM236) NA 0 NA 0.425541646653148 79 0.268746597239994 1 NA NA -5.79170248968853 LTS-018 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.998 1 NA NA NA NA NA LTS-018 chr10 18198201 32128235 13930035 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, NA NA NA NA NA NA NA NA NA LTS-018 MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CACNB2, THNSL1, MLLT10, LYZL1, PLXDC2, MASTL, ACBD5, ARHGAP12, SPAG6) 0.373125134421479 145 0.12348930879624 0.98798312167298 6181 0.472845834580924 3 2 1 -7.06050528709974 LTS-018 NA NA NA NA LTS-018 chr10 32128236 33017943 889708 * c(NA, KIF5B, CCDC7, EPC1, ARHGAP12) 0.379766297991468 11 0.0493646910987269 1.4377476926865 420 0.439847637249123 5 3 2 -6.92075758834914 LTS-018 chr10 33017944 33018232 289 * CCDC7 NA 0 NA 1.037 1 NA NA NA NA NA LTS-018 chr10 33018233 38671982 5653750 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ITGB1, PARD3, ZNF248, ZNF33A, ZNF37A, CCDC7, FZD8, CUL2, NRP1, ANKRD30A) 0.359671385282387 62 0.087624475185345 0.964008292413378 1743 0.248908298937242 3 2 1 -7.43745665277024 LTS-018 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 0.800770890740677 9 0.232519413765341 2 NA NA -5.76443189014485 LTS-018 chr10 42379883 46934817 4554935 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.436604943003019 48 0.0458811629867997 0.929588468449241 1807 0.234752245082114 2 1 1 -7.76325035815967 LTS-018 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 6.193 1 NA NA NA NA NA LTS-018 chr10 46952744 47420602 467859 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.438062146114589 31 0.0808679927911193 1.37318169525004 213 0.643252714937952 4 2 2 -6.74646798597747 LTS-018 chr10 47420603 47658503 237901 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 1.009 1 NA NA NA NA NA LTS-018 chr10 47658504 60154956 12496453 * c(TIMM23, MIR4294, MTRNR2L5, MIR3924, FAM170B-AS1, PRKG1-AS1, NA, CHAT, ZWINT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, DKK1, CSTF2T, NA, IPMK, SGMS1, PTPN20, GDF2, GDF10, C10orf53, A1CF, NA, FAM21A, NA, AGAP6, GLUD1P7, MBL2, MSMB, LRRC18, NA, OGDHL, CISD1, PRKG1, MAPK8, ASAH2, WDFY4, ARHGAP22, RBP3, DRGX, PCDH15, NA, AGAP7P, ASAH2B, SLC18A3, MIR605, TFAM, NA, NA, PARGP1, FRMPD2B, NA NA NA NA NA NA NA NA NA LTS-018 UBE2D1, NCOA4, PARG) 0.390545113422102 71 0.0981392473540905 0.966773594064807 4016 0.292369910486944 3 2 1 -7.79229572483243 LTS-018 NA NA NA NA LTS-018 chr10 60154957 60155090 134 * TFAM NA 0 NA 1.499 1 NA NA NA NA NA LTS-018 chr10 60155091 63212808 3057718 * c(MRLN, TMEM26, SLC16A9, FAM13C, LINC01553, ANK3, TFAM, FAM133CP, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.381833186248605 19 0.130658946245246 1.05027753190405 1504 0.388516296094415 3 2 1 -6.75856406204002 LTS-018 chr10 63212809 63212923 115 * TMEM26 NA 0 NA 0.855 1 NA NA NA NA NA LTS-018 chr10 63212924 74684301 11471378 * c(MIR1296, MIR1256, MIR4676, MIR548AV, MICU1, ANAPC16, COL13A1, ADAMTS14, OIT3, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, UNC5B, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, PALD1, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, NA NA NA NA NA NA NA NA NA LTS-018 PSAP, SAR1A, CDH23, PBLD, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, AIFM2, ADO, JMJD1C-AS1, SGPL1, MCU, DDX21, CHST3, VPS26A, SPOCK2) 0.412697114775513 135 0.088336844011716 0.930165247341707 7133 0.248162041300236 2 1 1 -8.66678563554303 LTS-018 NA NA NA NA LTS-018 chr10 74684302 74701105 16804 * c(OIT3, PLA2G12B) 0 1 NA 0.990282420686082 41 1.27518068208047 3 3 0 -5.76446420396305 LTS-018 chr10 74701106 74953426 252321 * c(ECD, NUDT13, FAM149B1, P4HA1, PLA2G12B) 0.189918702709571 9 0.123752553284546 0.931640331493144 279 0.331761935383526 2 2 0 -6.88207491756513 LTS-018 chr10 74953427 75007463 54037 * c(DNAJC9, FAM149B1, DNAJC9-AS1, MRPS16) 0.405 1 NA 0.870325774885263 149 0.126554401729588 2 2 0 -5.78027555030167 LTS-018 chr10 75007464 95279506 20272043 * c(DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, HECTD2-AS1, BMS1P21, FAS-AS1, GRID1-AS1, MARK2P9, MIR4679-1, MIR4679-2, MIR4678, LINC00502, PPIF, RPP30, NRG3, ADIRF, POLR3A, LDB3, CHCHD1, MSS51, CFAP70, COMTD1, ANKRD22, NUDT9P1, AGAP11, ADK, SAMD8, LIPJ, CFL1P1, DYDC1, EIF5AL1, HECTD2, FGFBP3, USP54, CYP26A1, FUT11, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, CPEB3, ZSWIM8, WAPL, DNAJC9, KAT6B, IFIT5, ZNF503-AS1, NA NA NA NA NA NA NA NA NA LTS-018 LRIT1, MYOF, AP3M1, ANKRD1, GHITM, GLUD1, GLUD1P3, FLJ37201, ZMIZ1-AS1, GRID1, HHEX, ANXA7, ANXA11, HTR7, DUPD1, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KCNMA1, KIF11, SH2D4B, C10orf99, SLC16A12, LIPA, MIR107, C10orf55, LINC00595, DNAJC9-AS1, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, MRPS16, DUSP13, PLAU, PANK1, CCSER2, EXOC6, FAM35A, MARCH5, PPP1R3C, CEP55, PPP3CB, RNLS, ZMIZ1, PTEN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 STAMBPL1, MYOZ1, ACTA2, RGR, RPS24, LOC642361, FAM25A, LIPK, LIPN, LINC00865, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, MMRN2, SYNPO2L, TMEM254, TNKS2, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, PCGF5, ZNF503, ATAD1, NDST2, MBL1P, LIPF, CH25H, BTAF1, PAPSS2, CDHR1, DLG5, OPN4, MINPP1, KIF20B, SEC24C) 0.403803316041174 189 0.0806038259225274 0.940197052833619 10991 0.279367928560875 3 2 1 -9.09613475034604 LTS-018 NA NA NA NA LTS-018 chr10 95279507 95288086 8580 * CEP55 0 1 NA 1.12306305409915 9 2.39365843311957 3 3 0 -5.76441108003113 LTS-018 chr10 95288087 96827524 1539438 * c(PLCE1-AS1, FRA10AC1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, SLC35G1, TBC1D12, PIPSL, HELLS, FFAR4, PLCE1, PDE6C, CEP55, RBP4, NOC3L, LGI1) 0.145662892457451 10 0.213336588516832 0.956686025448854 1372 0.324992205162974 3 3 0 -6.90134009926344 LTS-018 chr10 96827525 96828323 799 * CYP2C8 0.458 1 NA 1.20246450522125 3 0.698624601150957 3 3 0 -5.76442009280578 LTS-018 chr10 96828324 113915256 17086933 * c(TLX1NB, MIR936, C10orf131, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4482, MIR4685, MIR5692C2, ACTR1A, SMNDC1, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, ACSM6, ADRA2A, CYP2C8, NA NA NA NA NA NA NA NA NA LTS-018 CYP17A1, NKX2-3, CFAP58, DNTT, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, RRP12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, PDCD4, R3HCC1L, POLL, GOT1, BLOC1S2, RBM20, PDCD4-AS1, BLNK, KCNIP2, TLX1, HPS1, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, MXI1, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, SUFU, PGAM1, PITX3, CCNJ, CNNM2, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, GPAM, SEMA4G, ALDH18A1, AVPI1, HPSE2, SCD, MMS19, SFRP5, RPL13AP6, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TLL2, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, SHOC2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, PDLIM1, SMC3, NEURL1, NOLC1, BBIP1, OPALIN, GSTO1, ENTPD1, SH3PXD2A, SLK, ZNF518A) 0.39946280171483 332 0.0868524095983173 0.926211366354845 14023 0.24048082478143 2 1 1 -9.34549473195339 LTS-018 NA NA NA NA LTS-018 chr10 113915257 119308575 5393319 * c(MIR2110, MIR4295, MIR3663, MIR4483, VAX1, PDZD8, PNLIPRP3, TRUB1, VTI1A, C10orf82, ADRB1, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, ZDHHC6, SLC18A2, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.388007629132133 79 0.0963600841779666 1.01226330602964 4200 0.26920180198631 3 2 1 -6.98938133878119 LTS-018 chr10 119308576 121632254 2323679 * c(MIR4681, PRDX3, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.419079706886854 19 0.0493358818687381 0.894484702378449 1492 0.184633575771739 2 1 1 -7.25013703648317 LTS-018 chr10 121632255 121632260 6 * MCMBP NA 0 NA 1.233 1 NA NA NA NA NA LTS-018 chr10 121632261 134693137 13060877 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, NA NA NA NA NA NA NA NA NA LTS-018 C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, MCMBP, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.390654752341578 203 0.110304430576337 0.967327361900933 6569 0.329239760340396 3 2 1 -7.62084106879523 LTS-018 NA NA NA NA LTS-018 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.515 1 NA NA NA NA NA LTS-018 chr10 134694406 134756359 61954 * CFAP46 0.447824868087456 8 0.0365842960064248 0.500552222026649 171 0.115495114018858 2 1 1 -7.48825312194671 LTS-018 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.523 1 NA NA NA NA NA LTS-018 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.348574296190914 32 0.0982499230484801 0.926063463780819 1391 0.289426769093641 3 2 1 -6.85454145736832 LTS-018 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.253 1 NA NA NA NA NA LTS-018 chr11 193025 193096 72 * SCGB1C1 0.264 1 NA 0.133 1 NA NA NA NA NA LTS-018 chr11 193097 747593 554497 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, IRF7, IFITM5, MIR210, BET1L, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, PGGHG, RASSF7, PTDSS2, IFITM1) 0.427097572520873 67 0.0626305240424849 0.776594791056686 1986 0.212517479873993 2 1 1 -6.73794372509016 LTS-018 chr11 747594 755786 8193 * TALDO1 NA 0 NA 1.818 1 NA NA NA NA NA LTS-018 chr11 755787 870524 114738 * c(LOC171391, CRACR2B, PDDC1, CEND1, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, CHID1, TALDO1, TSPAN4, SLC25A22, CD151) 0.294711922916554 12 0.0400827742038745 1.35331185858089 667 0.353141886605276 4 3 1 -6.74544452358682 LTS-018 chr11 870525 883113 12589 * CHID1 NA 0 NA 0.923 1 NA NA NA NA NA LTS-018 chr11 883114 1013167 130054 * c(AP2A2, MUC6, CHID1) 0.462251683726859 9 0.0168457050246577 0.804079589894879 247 0.167924576643702 2 1 1 -8.70393045726043 LTS-018 chr11 1013168 1016834 3667 * MUC6 0.274 1 NA 0.832547637364956 37 0.131770468832954 2 2 0 -5.76465838520039 LTS-018 chr11 1016835 1017773 939 * MUC6 0.288889300084746 26 0.0866731881175577 0.940971750449291 47 0.228739723790147 4 3 1 -6.73459495298223 LTS-018 chr11 1017774 1017783 10 * MUC6 0.402 1 NA 0.585 1 NA NA NA NA NA LTS-018 chr11 1017784 1253856 236073 * c(MUC2, MUC6, MUC5B) 0.399808071065311 76 0.0881825568541383 0.843608437149167 727 0.208966618842936 2 1 1 -6.7959944913238 LTS-018 chr11 1253857 1253942 86 * MUC5B 0.324 1 NA 0.550458157185611 3 0.379157399154142 1 1 0 -5.76441267729724 LTS-018 chr11 1253943 1260193 6251 * MUC5B 0.278715182269138 15 0.0676550775907435 0.752219723823115 60 0.344479092130791 4 3 1 -6.75837246288469 LTS-018 chr11 1260194 1262907 2714 * MUC5B 0.435 1 NA 0.743076321022508 49 0.135928749718373 2 2 0 -5.76483470500516 LTS-018 chr11 1262908 3379419 2116512 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, MRGPRE, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MUC5B, ZNF195, NA NA NA NA NA NA NA NA NA LTS-018 MOB2, CARS, SYT8, BRSK2, CD81) 0.434528485490136 135 0.068329290824081 0.819777602841512 2624 0.204616444691685 2 1 1 -6.76754573571724 LTS-018 NA NA NA NA LTS-018 chr11 3379420 3394894 15475 * ZNF195 0.474 1 NA 0.753227875584635 85 0.195674606990095 2 2 0 -5.76516650080439 LTS-018 chr11 3394895 4471625 1076731 * c(LOC100506082, MIR4687, OR7E12P, ART5, OR52K2, OR52B4, PGAP2, RHOG, ART1, NUP98, CHRNA10, RRM1, TSSC2, TRIM21, STIM1, TRPC2, ZNF195) 0.448649459885413 23 0.0388952175037501 0.807681055005166 843 0.192397079673292 2 1 1 -6.93412289294702 LTS-018 chr11 4471626 4496354 24729 * character(0) NA 0 NA 1.043 1 NA NA NA NA NA LTS-018 chr11 4496355 4968330 471976 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, OR51G1, OR51G2, OR51E2) 0.460513124995127 47 0.029954035092394 0.915413240650302 695 0.320909605272065 2 1 1 -7.49407703991552 LTS-018 chr11 4968331 4968390 60 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-018 chr11 4968391 5009631 41241 * c(OR51A2, MMP26) 0.48 1 NA 0.460864404617066 39 0.260879680748157 1 1 0 -5.76755215214184 LTS-018 chr11 5009632 5010830 1199 * MMP26 NA 0 NA 0.931 1 NA NA NA NA NA LTS-018 chr11 5010831 5776729 765899 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.43550902538556 84 0.0906900136256941 0.877912221907495 1215 0.388541289276949 2 1 1 -6.76838441013471 LTS-018 chr11 5776730 5809283 32554 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.454544709385843 2 0.0127279220613579 1.33539592484349 40 0.381054534592272 4 2 2 -8.82677013427349 LTS-018 chr11 5809284 6221214 411931 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.469896090787454 18 0.021938788879889 0.830520774304981 383 0.213797699290453 2 1 1 -8.51001225620025 LTS-018 chr11 6221215 6231731 10517 * c(OR52W1, C11orf42) 0.443 1 NA 0.760487093502382 31 0.103532416615872 2 2 0 -5.76566967257224 LTS-018 chr11 6231732 6644600 412869 * c(TRIM3, PRKCDBP, TPP1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.442824879493521 38 0.0336979407249737 0.804920655339475 1583 0.160036991619582 2 1 1 -6.88091373296366 LTS-018 chr11 6644601 6654616 10016 * DCHS1 0 1 NA 0.787020755106132 149 0.193515694823275 2 2 0 -5.76443311312807 LTS-018 chr11 6654617 6703892 49276 * c(MRPL17, DCHS1) 0.327070487562652 9 0.202543273839883 0.80115330904601 115 0.184096845885912 3 2 1 -6.83324300247952 LTS-018 chr11 6703893 6704051 159 * MRPL17 0.458 1 NA 0.724158281906351 3 0.133551488198372 2 2 0 -5.76445831669239 LTS-018 chr11 6704052 19247464 12543413 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, USH1C, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, COPB1, ADM, SYT9, PLEKHA7, SPTY2D1, TMEM86A, OR10A5, OR2AG1, LDHAL6A, EIF4G2, RRAS2, SWAP70, DENND5A, MRGPRX1, SERGEF, OR5E1P, OR10A3, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, OR10A4, NA NA NA NA NA NA NA NA NA LTS-018 OLFML1, LOC283299, GTF2H1, NLRP10, NLRP14, OR2AG2, OTOG, OR10A2, OVCH2, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR10A6, LDHA, LDHC, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LOC644656, RASSF10, STK33, ST5, SNORA23, SNORA3B, ABCC8, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, RIC3, CALCB, E2F8, CSRP3, SBF2, FAR1, BTBD10, PTPN5, PPFIBP2, MICALCL, OR6A2, EIF3F, MICAL2, CTR9, TRIM66) 0.43386298012295 272 0.0945720987636097 0.806776568199426 10730 0.263573123963812 2 1 1 -6.75499471471858 LTS-018 NA NA NA NA LTS-018 chr11 19247465 19250965 3501 * E2F8 NA 0 NA 1.006 1 NA NA NA NA NA LTS-018 chr11 19250966 30933022 11682057 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, DBX1, ARL14EP, MUC15, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, GAS2, LUZP2, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.430397503627112 85 0.104108321363044 0.864077343596271 3345 0.255344537302525 2 1 1 -7.37382555352805 LTS-018 chr11 30933023 30937026 4004 * DCDC5 NA 0 NA 0.746 1 NA NA NA NA NA LTS-018 chr11 30937027 46336792 15399766 * c(C11orf91, MIR670, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, LARGE2, DNAJC24, CRY2, LDLRAD3, C11orf94, CSTF3, IMMP1L, ELF5, EXT2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, DCDC1, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, LMO2, MIR129-2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, HSD17B12, PHF21A, NA NA NA NA NA NA NA NA NA LTS-018 WT1-AS, TRIM44, NAT10, SLC35C1, TCP11L1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, TRAF6, SEC14L1P1, WT1, PRRG4, QSER1, PRR5L, PDHX, ACCS, CAT, CHST1, API5, TSPAN18, CREB3L1, DEPDC7, PEX16, MAPK8IP1, TP53I11, CD44, CD59) 0.441610072871334 162 0.0984808573161588 0.81192968568797 6797 0.267552355256244 2 1 1 -6.79533574168402 LTS-018 NA NA NA NA LTS-018 chr11 46336793 46336846 54 * CREB3L1 NA 0 NA 1.157 1 NA NA NA NA NA LTS-018 chr11 46336847 46473388 136542 * c(MIR3160-2, MIR3160-1, MIR4688, CHRM4, MDK, AMBRA1, DGKZ, CREB3L1) 0 1 NA 1.09787723988328 362 0.251293001574766 3 3 0 -5.76453366299638 LTS-018 chr11 46473389 46515121 41733 * c(MIR3160-2, MIR3160-1, AMBRA1) NA 0 NA 0.8 1 NA NA NA NA NA LTS-018 chr11 46515122 48285839 1770718 * c(LRP4-AS1, NR1H3, MIR5582, CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, DDB2, F2, NUP160, FNBP4, MTCH2, HARBI1, PACSIN3, OR4X1, ARHGAP1, FAM180B, LRP4, MYBPC3, NDUFS3, ACP2, AMBRA1, KBTBD4, PSMC3, PTPRJ, RAPSN, SPI1, SNORD67, C11orf49, ZNF408, AGBL2, ARFGAP2, MADD, SLC39A13, ATG13, CKAP5) 0.394505031112798 32 0.154230334136129 0.795167968574083 3166 0.181888505317846 2 1 1 -6.75795668039621 LTS-018 chr11 48285840 48346419 60580 * c(OR4S1, OR4X1) NA 0 NA 1.18160277332513 36 4.48614510544887 3 NA NA -5.76442265186176 LTS-018 chr11 48346420 48346423 4 * character(0) 0.377 1 NA 2.237 1 NA NA NA NA NA LTS-018 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.328728392661723 100 0.0615958307325777 1.5748211603131 168 0.951914401116527 13 9 4 -6.77586543439312 LTS-018 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.794 1 NA NA NA NA NA LTS-018 chr11 48387986 51459390 3071405 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.406796050614492 11 0.0624409539266716 0.85035296431786 441 0.471307911359265 2 1 1 -6.82427064785737 LTS-018 chr11 51459391 51527703 68313 * OR4C46 NA 0 NA 0.835257417600246 35 0.183477757221299 2 NA NA -5.76715808854101 LTS-018 chr11 55035776 55340582 304807 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) NA 0 NA 0.819559451920038 91 0.130625515871997 2 NA NA -5.77313109970437 LTS-018 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.099 1 NA NA NA NA NA LTS-018 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.0689518724399028 67 0.0419625675840402 0 NA NA -12.0606055825909 LTS-018 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.799 1 NA NA NA NA NA LTS-018 chr11 55432533 55587391 154859 * c(OR4C6, OR5D14, OR5L1, OR5D18, OR5D13) 0.455 1 NA 0.896051909653332 97 0.173078497947868 2 2 0 -5.80712938281079 LTS-018 chr11 55587392 56128763 541372 * c(OR5I1, OR8I2, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8J3, TRIM51) 0.465540649661996 11 0.0149362280744139 0.88845103769104 495 0.189329902179993 2 1 1 -9.47219378685428 LTS-018 chr11 56128764 56128772 9 * OR8J1 0.466 1 NA 2.34 1 NA NA NA NA NA LTS-018 chr11 56128773 56143125 14353 * OR8U8 0.283 1 NA 1.43699916373499 3 1.6059048332119 4 4 0 -5.7644160161984 LTS-018 chr11 56143126 56143977 852 * OR8U8 0.290278327417147 16 0.140321297979554 1.62822523492654 36 0.887409223615988 4 3 1 -6.73309897547957 LTS-018 chr11 56143978 56144012 35 * OR8U8 NA 0 NA 0.678 1 NA NA NA NA NA LTS-018 chr11 56144013 56468835 324823 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.336288514403184 19 0.14344815882055 0.90341377944299 272 0.368537095001762 3 2 1 -6.80429391049079 LTS-018 chr11 56468836 56508619 39784 * OR8U8 0.475 1 NA 0.695650105500762 5 0.342567803507568 2 2 0 -5.76813542548998 LTS-018 chr11 56508620 60559805 4051186 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, OR9G4, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5AK2, OR5B2, OR5B12, OR5AN1, OR4D10, NA NA NA NA NA NA NA NA NA LTS-018 OR4D9, OR10V1, MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, MS4A4A, MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.437745481666245 72 0.0833407966141534 0.828076000652326 4306 0.241960440158875 2 1 1 -6.80715086752531 LTS-018 NA NA NA NA LTS-018 chr11 60559806 60610056 50251 * c(MS4A10, CCDC86) 0.494 1 NA 0.742411606080264 47 0.176339915950549 2 2 0 -5.76920048104895 LTS-018 chr11 60610057 62420855 1810799 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, EEF1G, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, GANAB, FTH1, EML3, TKFC, DKFZP434K028, B3GAT3, PRPF19, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, ROM1, PGA3, PGA4, TUT1, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, INTS5, NA NA NA NA NA NA NA NA NA LTS-018 SYT7, CD5, MTA2, CD6, FADS2) 0.438240914803381 38 0.101861818235415 0.817978775307745 4165 0.181062956199894 2 1 1 -6.7651371263454 LTS-018 NA NA NA NA LTS-018 chr11 62420856 62430348 9493 * LBHD1 NA 0 NA 1.34 1 NA NA NA NA NA LTS-018 chr11 62430349 62506167 75819 * c(HNRNPUL2-BSCL2, LRRN4CL, HNRNPUL2, BSCL2, GNG3, TTC9C, UBXN1, SNORA57, METTL12, LBHD1, UQCC3) NA 0 NA 0.976734762599096 451 0.179301911676699 3 NA NA -5.78061521240786 LTS-018 chr11 62506168 62518426 12259 * character(0) NA 0 NA 1.363 1 NA NA NA NA NA LTS-018 chr11 62518427 62606731 88305 * c(NXF1, TAF6L, TMEM179B, POLR2G, WDR74, STX5, TMEM223, ZBTB3) NA 0 NA 1.21159720196949 494 0.250185680173207 3 NA NA -5.77432525134514 LTS-018 chr11 62606732 62849178 242447 * c(CHRM1, SNHG1, SLC22A24, WDR74, SLC3A2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) NA 0 NA 0.999023689262542 336 0.175594218665201 3 NA NA -5.79798594159102 LTS-018 chr11 62849179 68852800 6003622 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, MARK2, ESRRA, FAU, MRPL21, TPCN2, NA NA NA NA NA NA NA NA NA LTS-018 TIGD3, ALDH3B1, ALDH3B2, FKBP2, KDM2A, ATG2A, CLCF1, FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, SLC22A24, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, C11orf95, SPTBN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, NAA40, TMEM134, MUS81, FOSL1, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.438498273589633 200 0.102340941669053 0.796178748761427 13868 0.192726684767422 2 1 1 -6.74205208006982 LTS-018 NA NA NA NA LTS-018 chr11 68852801 68853175 375 * TPCN2 NA 0 NA 1.237 1 NA NA NA NA NA LTS-018 chr11 68853176 73388363 4535188 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, ARAP1, DHCR7, CTTN, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, MYEOV, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, PDE2A, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, PLEKHB1, RAB6A, CCND1, NA NA NA NA NA NA NA NA NA LTS-018 CLPB, RELT, PPFIA1, FADD, ATG16L2, ARHGEF17, FCHSD2, FGF19) 0.442639878617098 69 0.0733818011962303 0.832575234278814 4006 0.191696644873326 2 1 1 -6.9058317399823 LTS-018 NA NA NA NA LTS-018 chr11 73388364 73388963 600 * RAB6A NA 0 NA 0.752057768005021 14 0.0763272307492297 2 NA NA -5.76461344186981 LTS-018 chr11 73388964 73441772 52809 * RAB6A 0.278 1 NA 0.526260994921034 39 0.119874850394422 1 1 0 -5.76788437209256 LTS-018 chr11 73441773 74110465 668693 * c(C2CD3, P4HA3, PGM2L1, DNAJB13, COA4, PPME1, MRPL48, RAB6A, UCP2, UCP3, PAAF1) 0.286574510484603 32 0.0550454357780915 0.571155376825668 1021 0.208528426270858 1 1 0 -7.78922886231007 LTS-018 chr11 74110466 74165903 55438 * KCNE3 NA 0 NA 1.029 1 NA NA NA NA NA LTS-018 chr11 74165904 74354080 188177 * c(KCNE3, POLD3, LIPT2) 0.3466862538359 4 0.0570087712549569 1.07684322006499 225 0.24859875213583 3 2 1 -6.78858594562185 LTS-018 chr11 74354081 74379782 25702 * POLD3 NA 0 NA 0.804 1 NA NA NA NA NA LTS-018 chr11 74379783 74562249 182467 * c(MIR4696, XRRA1, RNF169, CHRDL2) 0.30748815568232 4 0.210265506760698 0.844530229565734 326 0.253257641424827 3 2 1 -6.88317016281647 LTS-018 chr11 74562250 74660292 98043 * c(XRRA1, SPCS2) 0.479 1 NA 0.761140342096027 63 0.193837976904224 2 2 0 -5.76763590270134 LTS-018 chr11 74660293 77531890 2871598 * c(TPBGL, NEU3, SLCO2B1, SNORD15B, CLNS1A, B3GNT6, GDPD4, TSKU, LRRC32, AQP11, KLHL35, LOC283214, OR2AT4, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, OMP, PAK1, RSF1, ACER3, THAP12, EMSY, SNORD15A, RPS3, CAPN5, UVRAG, WNT11, MOGAT2, GDPD5, DGAT2, SERPINH1, SPCS2) 0.429550706897219 55 0.107947758283896 0.809036066294174 3094 0.206690084675452 2 1 1 -6.74352390479276 LTS-018 chr11 77531891 77531969 79 * character(0) NA 0 NA 1.34 1 NA NA NA NA NA LTS-018 chr11 77531970 77698651 166682 * c(AAMDC, INTS4) 0.398 1 NA 1.00120367665312 135 0.198263521584671 3 3 0 -5.78164244388313 LTS-018 chr11 77698652 77883855 185204 * c(KCTD21-AS1, NDUFC2-KCTD14, KCTD21, NDUFC2, KCTD14, THRSP, ALG8, INTS4) 0.344 1 NA 1.0550237025521 243 0.238550183644144 3 3 0 -5.76617378258986 LTS-018 chr11 77883856 102323789 24439934 * c(NAALAD2, MIR708, KCTD21-AS1, MIR1304, SNORA70E, MIR4300, MIR1260B, MIR3920, RAB30-AS1, LOC100506368, MIR4490, MIR5579, GRM5-AS1, JRKL-AS1, LOC101054525, YAP1, CTSC, ME3, GPR83, PRSS23, TMEM123, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, ENDOD1, RAB38, PANX1, FUT4, ANGPTL5, TENM4, CHORDC1, RAB30, KCTD21, C11orf54, GRM5, BIRC2, BIRC3, NA NA NA NA NA NA NA NA NA LTS-018 ANKRD42, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, PCF11, PGR, CNTN5, SYTL2, ANKRD49, PRCP, KDM4D, TMEM126B, SMCO4, TRIM49, USP35, CEP126, CREBZF, CCDC90B, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, NARS2, CCDC82, PICALM, FZD4, TMEM133, TMEM126A, MAML2, C11orf70, CEP295, OR7E2P, JRKL, EED, MTMR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MED17, CEP57, GAB2) 0.372850858654598 200 0.0936801738623193 1.04275755650022 9582 0.284057571582191 3 2 1 -7.03944286005798 LTS-018 NA NA NA NA LTS-018 chr11 102323790 102369135 45346 * character(0) NA 0 NA 2.092 1 NA NA NA NA NA LTS-018 chr11 102369136 102552657 183522 * c(MMP7, MMP20) NA 0 NA 2.28396949630792 123 0.553056630263865 7 NA NA -5.7644904910737 LTS-018 chr11 102552658 102554013 1356 * character(0) NA 0 NA 1.292 1 NA NA NA NA NA LTS-018 chr11 102554014 119534698 16980685 * c(LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, MIR4693, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, CARD16, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, EXPH5, PHLDB1, SIK2, SIK3, BACE1, NA NA NA NA NA NA NA NA NA LTS-018 CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, GRIA4, GUCY1A2, H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MCAM, KMT2A, MMP1, MMP3, MMP8, MMP10, MMP12, MMP13, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, RPS25, SCN2B, SCN4B, SDHD, MMP27, ABCG4, CXCR5, LOC643733, LOC643923, CLDN25, C11orf1, RPL23AP64, SLN, TAGLN, THY1, UPK2, ZBTB16, RNF26, DYNC2H1, NLRX1, ALG9, PDZD3, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, BCO2, TMPRSS13, DCUN1D5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MSANTD4, BUD13, TMEM25, DIXDC1, ZC3H12C, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, UBE4A, C2CD2L) 0.374341136453365 281 0.0813092637097574 1.04556755210129 14596 0.405479419477851 3 2 1 -6.83564398195828 LTS-018 NA NA NA NA LTS-018 chr11 119534699 121986476 2451778 * c(TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, MIR100HG, MIR125B1, BLID, NECTIN1, SC5D, LOC649133, SORL1, TECTA) 0.411794108571336 18 0.0510583736162823 1.11697504787483 1840 0.38822551339617 4 2 2 -7.18088650465896 LTS-018 chr11 121986477 123301926 1315450 * c(MIR4493, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, BLID, CRTAM, CLMP, C11orf63, UBASH3B) 0.276267662190954 9 0.195092784193687 0.971508840057298 541 0.630727915378869 3 2 1 -6.87722554122465 LTS-018 chr11 123301927 123306141 4215 * character(0) NA 0 NA 1.131 1 NA NA NA NA NA LTS-018 chr11 123306142 134856661 11550520 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, ZBTB44, THYN1, DDX25, APLP2, TMEM225, NA NA NA NA NA NA NA NA NA LTS-018 OR8D4, STT3A, KCNJ1, KCNJ5, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.370590581059808 195 0.088773810475732 1.0701278837122 8027 0.492038679153261 3 2 1 -6.74342351053639 LTS-018 NA NA NA NA LTS-018 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.006 1 NA NA NA NA NA LTS-018 chr12 90914 7653981 7563068 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NA NA NA NA NA NA NA NA NA LTS-018 NINJ2, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, FAM138D, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 DYRK4, CCND2, CD4, CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.124860394962707 200 0.0446619811787842 0.810608434137477 9272 0.284838064981167 2 2 0 -6.78165751559714 LTS-018 NA NA NA NA LTS-018 chr12 7653982 9583284 1929303 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.148877436694553 65 0.0718877831441798 0.771722016977309 2194 0.293866749139728 2 2 0 -6.76831461410007 LTS-018 chr12 9583285 9585518 2234 * DDX12P NA 0 NA 1.699 1 NA NA NA NA NA LTS-018 chr12 9585519 9717935 132417 * DDX12P NA 0 NA 1.17160434654805 105 0.341584934921855 3 NA NA -5.76821274902281 LTS-018 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.717 1 NA NA NA NA NA LTS-018 chr12 9747241 10579525 832285 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.118340237554046 35 0.0531392178206288 0.73831364905662 1113 0.337891719201095 2 2 0 -6.81724494470519 LTS-018 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 0.226 1 NA NA NA NA NA LTS-018 chr12 10583165 10594948 11784 * c(KLRC1, KLRC2, KLRC3) NA 0 NA 0.300801520630456 55 0.158857658158351 0 NA NA -5.79579096896613 LTS-018 chr12 10594949 10598595 3647 * KLRC1 NA 0 NA 0.954 1 NA NA NA NA NA LTS-018 chr12 10598596 11183451 584856 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R31, TAS2R19, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.178129613647802 40 0.0514798379751599 0.738267484678647 685 0.256508676089538 2 2 0 -7.15584615141177 LTS-018 chr12 11183452 11183487 36 * c(PRH1-PRR4, TAS2R31, PRB4) NA 0 NA 0.888 1 NA NA NA NA NA LTS-018 chr12 11183488 25361816 14178329 * c(MIR920, SMIM10L1, LOC100506314, LOC100506393, PRH1-PRR4, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, C12orf77, EMP1, EPS8, ETV6, TAS2R43, TAS2R31, TAS2R46, TAS2R30, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, TAS2R42, KCNJ8, KRAS, RPL13AP20, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, NA NA NA NA NA NA NA NA NA LTS-018 GOLT1B, DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, PRB1, PRB3, PRB4, ETNK1, GPRC5D, ATF7IP, H2AFJ, LMO3, CMAS, FAM234B, PTPRO, BCAT1, RECQL, ST8SIA1, PRB2, SLCO1A2, SOX5, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, C2CD5) 0.151825872198579 182 0.0695791378243163 0.806469973296349 6899 0.35329933249334 2 2 0 -6.7780065536145 LTS-018 NA NA NA NA LTS-018 chr12 25361817 25380399 18583 * KRAS NA 0 NA 1.70323246653947 41 1.32031830465602 5 NA NA -5.76441282459474 LTS-018 chr12 25380400 25386724 6325 * KRAS NA 0 NA 0.708 1 NA NA NA NA NA LTS-018 chr12 25386725 33592746 8206022 * c(MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, RASSF8, FGD4, LMNTD1, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, FGFR1OP2, SMCO2, OVCH1, SYT10, ITPR2, KRAS, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, BHLHE41, FLJ13224, SSPN, TMTC1, PPFIBP1, MED21) 0.125016238021659 107 0.0519422111508719 0.821263283390494 4924 0.262051117768844 2 2 0 -6.82208558667419 LTS-018 chr12 33592747 34182671 589925 * c(SYT10, ALG10) NA 0 NA 0.90221296441824 65 0.189795047607028 2 NA NA -5.9132767794851 LTS-018 chr12 38710341 39687754 977414 * c(ALG10B, CPNE8, KIF21A) 0.146 1 NA 0.812950081623363 210 0.210513240226778 2 2 0 -5.76993836245053 LTS-018 chr12 39687755 42475888 2788134 * c(SLC2A13, LRRK2, CNTN1, ABCD2, C12orf40, GXYLT1, PDZRN4, KIF21A) 0.125801424093596 26 0.0565190369562463 0.820643234531175 1861 0.267482519729434 2 2 0 -6.77003960615239 LTS-018 chr12 42475889 42477889 2001 * GXYLT1 NA 0 NA 0.875216922562761 49 0.259228397836537 2 NA NA -5.76456875938453 LTS-018 chr12 42477890 42477962 73 * GXYLT1 NA 0 NA 2.489 1 NA NA NA NA NA LTS-018 chr12 42477963 42478502 540 * GXYLT1 0.281 1 NA 1.21177720094439 25 0.394612713091372 3 3 0 -5.76443456870245 LTS-018 chr12 42478503 42479132 630 * GXYLT1 0.32420654830741 7 0.0646009730134594 1.55969415748841 26 0.699458577428615 19 13 6 -6.73486589018669 LTS-018 chr12 42479133 42479153 21 * GXYLT1 NA 0 NA 0.855 1 NA NA NA NA NA LTS-018 chr12 42479154 42538340 59187 * GXYLT1 0.207440698039813 4 0.107902733978338 0.903139235909362 93 0.550473903529108 1 1 0 -6.77359537106942 LTS-018 chr12 42538341 42538530 190 * GXYLT1 0.115 1 NA 0.405193867042326 2 0.14142135623731 1 1 0 -5.76468887126711 LTS-018 chr12 42538531 51856714 9318184 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, PRICKLE1, BCDIN3D, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, GXYLT1, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, NA NA NA NA NA NA NA NA NA LTS-018 LALBA, LINC00938, ASIC1, DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, BIN2, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, NCKAP5L, RNY5, HIGD1C, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23, SLC4A8, DAZAP2) 0.127876640131519 179 0.0402826160955361 0.795218100047668 10462 0.628031590647734 2 2 0 -6.75234025068522 LTS-018 NA NA NA NA LTS-018 chr12 51856715 51857366 652 * SLC4A8 NA 0 NA 1.083 1 NA NA NA NA NA LTS-018 chr12 51857367 53621580 1764214 * c(KRT71, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, ANKRD33, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, CSAD, RARG, ATG101, SCN8A, SOAT2, SPRYD3, ACVR1B, KRT75, ACVRL1, SLC4A8) 0.119092948339871 76 0.0474077941626524 0.849160593411359 3486 0.843724930301097 2 2 0 -6.80682170245386 LTS-018 chr12 53621581 53645246 23666 * RARG NA 0 NA 1.569 1 NA NA NA NA NA LTS-018 chr12 53645247 53881280 236034 * c(SP7, AMHR2, PCBP2, PFDN5, PRR13, C12orf10, SP1, MAP3K12, AAAS, MFSD5, ESPL1) 0.101738092964967 14 0.0216993695153255 1.04200052564838 945 0.251038089217385 3 3 0 -6.74656103273053 LTS-018 chr12 53881281 53894661 13381 * MAP3K12 NA 0 NA 0.785 1 NA NA NA NA NA LTS-018 chr12 53894662 54113612 218951 * c(LOC100652999, ATF7, ATP5G2, CALCOCO1, TARBP2, NPFF) 0.0570989173158095 3 0.0935788437628933 0.76879861364029 326 0.199775445268748 2 2 0 -7.12756106606417 LTS-018 chr12 54113613 54115259 1647 * CALCOCO1 NA 0 NA 0.974 1 NA NA NA NA NA LTS-018 chr12 54115260 54798366 683107 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, HOXC13-AS, COPZ1, CBX5, SMUG1, ZNF385A, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, ITGA5, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, GPR84, CALCOCO1, MIR615) 0.130559502499438 14 0.107250144086586 1.02159577029252 1179 0.247114250221802 3 3 0 -6.81041183083472 LTS-018 chr12 54798367 54798517 151 * ITGA5 NA 0 NA 0.553 1 NA NA NA NA NA LTS-018 chr12 54798518 58203354 3404837 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, OR6C74, OR6C3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, NA NA NA NA NA NA NA NA NA LTS-018 APOF, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, LRP1, MARS, METTL1, MIP, MMP19, OR9K2, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, PDE1B, IL23A, PPP1R1A, PRIM1, NDUFA4L2, NEUROD4, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, LACRT, MARCH9, COQ10A, CD63, TESPA1, ZBTB39, PAN2) 0.119568771049995 100 0.0340543401170553 0.809277998406918 8786 0.224312427751495 2 2 0 -6.86570375117375 LTS-018 NA NA NA NA LTS-018 chr12 58203355 58216989 13635 * c(CTDSP2, AVIL) 0.448 1 NA 0.734934757888718 111 0.121722527200899 2 2 0 -5.76798051507697 LTS-018 chr12 58216990 58220872 3883 * c(CTDSP2, MIR26A2) 0.403987036314118 17 0.0856174374075474 0.830201232906545 69 0.287258619527341 5 3 2 -6.74688350318065 LTS-018 chr12 58220873 58345606 124734 * c(LOC100506844, CTDSP2, ATP23) 0.115 1 NA 0.738291820662773 47 0.222377860956252 2 2 0 -5.77311174215385 LTS-018 chr12 58345607 75896688 17551082 * c(LOC100130075, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, TMEM5, CCT2, FRS2, GLIPR1, CPSF6, KRR1, WIF1, IRAK3, XPOT, C12orf56, RAB3IP, LRIG3, TPH2, CPM, GLIPR1L2, BEST3, C12orf66, ZFC3H1, RPSAP52, RAB21, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GLIPR1L1, KCNMB4, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, IFNG, KCNC2, LRRC10, FLJ41278, MIRLET7I, LYZ, NA NA NA NA NA NA NA NA NA LTS-018 MDM2, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TBC1D15, MIR548C, TSPAN8, MRS2P2, YEATS4, HMGA2, THAP2, LLPH, DYRK2, CAPS2, LGR5, ATP23, SLC16A7, HELB, USP15) 0.127119054259824 142 0.0577497940032849 0.809602503862545 8425 0.279540711379639 2 2 0 -6.78017876718964 LTS-018 NA NA NA NA LTS-018 chr12 75896689 75896701 13 * KRR1 NA 0 NA 0.707 1 NA NA NA NA NA LTS-018 chr12 75896702 76806197 909496 * c(KRR1, OSBPL8, PHLDA1, NAP1L1, BBS10) 0.146880097197265 6 0.0152534149181967 0.707814627381287 594 0.174268146215026 2 2 0 -7.31112791753757 LTS-018 chr12 76806198 76816268 10071 * OSBPL8 NA 0 NA 0.816 1 NA NA NA NA NA LTS-018 chr12 76816269 88974172 12157904 * c(MIR1252, MIR4699, MIR548AL, OSBPL8, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, ZDHHC17, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.116448941434015 40 0.0581733924551731 0.848891708952514 3850 0.270420485528303 2 2 0 -7.17394298569551 LTS-018 chr12 88974173 88974297 125 * KITLG NA 0 NA 0.731 1 NA NA NA NA NA LTS-018 chr12 88974298 123738265 34763968 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR4304, MIR3685, MIR3652, MIR3922, LOC100505978, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, POC1B-GALNT4, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5700, ARPC3, PLXNC1, MPHOSPH9, CAMKK2, TRAFD1, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, KERA, PRDM4, CIT, PWP1, FICD, NUDT4, SDSL, IQCD, DEPDC4, CCDC38, NA NA NA NA NA NA NA NA NA LTS-018 C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, SPPL3, CMKLR1, COX6A1, CRY1, AMDHD1, TMEM120B, WDR66, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DCN, EPYC, DTX1, DUSP6, PLBD2, FAM71C, RMST, CCER1, ELK3, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, UHRF1BP1L, CUX2, KIAA1033, MED13L, SIRT4, ABCB9, ISCU, CORO1C, SLC17A8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TTC41P, LRRC43, TCP11L2, TBX5-AS1, LINC01619, FBXW8, HSPB8, HCAR1, UTP20, POC1B, MORN3, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, HPD, MMAB, HCAR2, LINC00936, TMEM119, LINC01089, C12orf74, IGF1, ACADS, C12orf42, IL31, C12orf75, CFAP73, TMEM233, ARL1, C12orf76, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MSI1, MVK, MYBPC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MYL2, NFYB, NOS1, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, P2RX4, P2RX7, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, ARL6IP4, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, RHOF, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, ZCCHC8, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, DIABLO, ANKS1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CHPT1, PSMD9, CLLU1OS, CLLU1, TMCC3, PITPNM2, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643339, LOC643711, LOC643770, SUDS3, ACTR6, C12orf43, VPS33A, RSRC2, SNRPF, SNORA53, TBX5, TBX3, HNF1A, MIR620, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, B3GNT4, TCTN1, OGFOD2, VPS37B, C12orf49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NAA25, SLC8B1, RNF34, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, COQ5, HVCN1, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DENR, OASL, DYNLL1, SRSF9, GALNT4, CRADD, HRK, ADAM1A, SOCS2, HCAR3, ANKRD13A, TMEM116, UBE3B, HIP1R, TMEM263, C12orf65, BICDL1, CABP1, WSCD2, SART3, KNTC1, MLEC, GIT2, NUAK1, RBM19, RNF10, NR1H4 NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ) 0.129235634779328 458 0.0538719535672771 0.793380307150259 29135 0.386592678163606 2 2 0 -6.74229329358009 LTS-018 NA NA NA NA LTS-018 chr12 123738266 123892095 153830 * c(KMT5A, SBNO1, CDK2AP1, C12orf65) 0.339 1 NA 0.775120025985711 265 0.204432527896072 2 2 0 -5.76604401572037 LTS-018 chr12 123892096 124017850 125755 * c(SNRNP35, RILPL2, RILPL1, KMT5A) 0.352099558827138 9 0.150359384291252 0.839418435777441 204 0.193074991598996 3 2 1 -6.86929943166713 LTS-018 chr12 124017851 124018144 294 * RILPL1 0.182 1 NA 1.01500574026837 8 0.561229772145827 3 3 0 -5.76441277087791 LTS-018 chr12 124018145 124323244 305100 * c(MIR3908, TMED2, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, RILPL1, DDX55, TCTN2) 0.152108902982781 23 0.0351292925302502 0.764059471295939 792 0.212318042627739 2 2 0 -6.8773732598023 LTS-018 chr12 124323245 124325859 2615 * DNAH10 NA 0 NA 0.925 1 NA NA NA NA NA LTS-018 chr12 124325860 133181474 8855615 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, EP400, DHX37, FBRSL1, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NA NA NA NA NA NA NA NA NA LTS-018 NCOR2) 0.135648889501289 95 0.0559964044598402 0.832489326162619 4277 0.29055375125044 2 2 0 -6.85358675361039 LTS-018 NA NA NA NA LTS-018 chr12 133181475 133182679 1205 * LRCOL1 NA 0 NA 0.675 1 NA NA NA NA NA LTS-018 chr12 133182680 133811705 629026 * c(ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, POLE, CHFR, PXMP2, ANHX, ZNF10, ZNF140) 0.131241025219593 40 0.0785024864868329 0.774608295024353 1964 0.202666066532794 2 2 0 -6.74161099223091 LTS-018 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.68775310534619 19 0.113995075301447 2 NA NA -5.76540686171508 LTS-018 chr13 19271620 19753686 482067 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.38 1 NA 1.04928714264275 35 0.232668198850428 3 3 0 -5.77113968109539 LTS-018 chr13 19753687 24463556 4709870 * c(ANKRD26P3, LINC00421, SACS-AS1, LINC00327, MIR4499, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.332516360764477 44 0.0776136280834147 1.06832774208945 2399 0.305896431714858 3 2 1 -6.83996360748896 LTS-018 chr13 24463557 24465199 1643 * c(MIPEP, C1QTNF9B-AS1) NA 0 NA 0.336 1 NA NA NA NA NA LTS-018 chr13 24465200 24468770 3571 * c(C1QTNF9B, C1QTNF9B-AS1) NA 0 NA 0.447840848705234 41 0.244667235439404 1 NA NA -5.76493964741043 LTS-018 chr13 24468771 24470992 2222 * C1QTNF9B NA 0 NA 1.023 1 NA NA NA NA NA LTS-018 chr13 24470993 29242762 4771770 * c(PAN3-AS1, MIR2276, SPATA13-AS1, CDK8, CDX2, WASF3, PARP4, AMER2, USP12, MTIF3, GSX1, SPATA13, LNX2, FLT1, FLT3, PAN3, SNORD102, GPR12, GTF3A, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, ATP5EP2, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, CENPJ, RNF17, RNF6, RPL21, SNORA27, TPTE2P1, URAD, MTMR6, NUP58) 0.327675446718719 86 0.0964264638338282 1.09780181966567 3527 0.363778820958097 3 2 1 -6.81941911189987 LTS-018 chr13 29242763 29246467 3705 * POMP NA 0 NA 0.897 1 NA NA NA NA NA LTS-018 chr13 29246468 33268484 4022017 * c(LINC00426, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, MTUS2, ALOX5AP, SLC46A3, HMGB1, LINC00544, POMP, UBL3, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1) 0.356173627051985 30 0.109099664443156 1.01351560699497 2223 0.548342642591653 3 2 1 -6.77547338564929 LTS-018 chr13 33268485 33270853 2369 * PDS5B NA 0 NA 1.601 1 NA NA NA NA NA LTS-018 chr13 33270854 41239962 7969109 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.379928264640789 93 0.0818081299519015 1.0884189070333 3222 0.291462367515184 3 2 1 -6.75551058731989 LTS-018 chr13 41239963 41240056 94 * FOXO1 NA 0 NA 0.982 1 NA NA NA NA NA LTS-018 chr13 41240057 53420795 12180739 * c(LINC00462, TPT1-AS1, MIR759, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA LTS-018 CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.374628144687094 122 0.0942445648458341 1.00593570104223 7096 0.303979050308154 3 2 1 -7.18366073192144 LTS-018 NA NA NA NA LTS-018 chr13 53420796 109708218 56287423 * c(FKSG29, UBAC2-AS1, MIR1297, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, LINC00359, NA NA NA NA NA NA NA NA NA LTS-018 MBNL2, FARP1, SPRY2, ABCC4, PIBF1, OLFM4, TNFSF13B, SOX21, KLF12, SLITRK1, KCTD12, CLN5, METTL21EP, SLAIN1, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, DIS3, MYO16, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 IPO5, LIG4, LMO7, MIR19B1, MIR17HG, MZT1, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, ARGLU1, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, SLC10A2, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, RNF219, BORA, TDRD3, DIAPH3, SLITRK6, STK24, TMTC4, ABHD13, ZIC5, GGACT, SCEL, CLDN10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TEX30, ITGBL1, TM9SF2, TBC1D4) 0.350738791195552 180 0.114755257206311 1.05748217338107 9671 0.327982291582272 3 2 1 -6.97332522314797 LTS-018 NA NA NA NA LTS-018 chr13 109708219 109779906 71688 * MYO16 0.476 1 NA 1.11413823167296 33 0.299345586743867 3 3 0 -5.76469732019924 LTS-018 chr13 109779907 114839373 5059467 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, IRS2, PROZ, ARHGEF7) 0.357760877796214 81 0.0916606210127579 1.05136649052685 3642 0.311339413165777 3 2 1 -6.77089054356461 LTS-018 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.561 1 NA NA NA NA NA LTS-018 chr13 114897818 115090193 192376 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.39896426721263 5 0.0474584028386966 0.880092631523374 181 0.222633723067784 2 1 1 -6.94411666674677 LTS-018 chr13 115090194 115092817 2624 * CHAMP1 NA 0 NA 0.813370517514959 55 0.150961078222326 2 NA NA -5.76444048909832 LTS-018 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.346 1 NA 1.14633195738168 12 0.439737206301742 3 3 0 -5.77108188235495 LTS-018 chr14 20201973 20404847 202875 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.331978172422149 9 0.0334917070995858 1.30444931942774 191 0.423128199732247 6 4 2 -7.0183474414254 LTS-018 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.77 1 NA NA NA NA NA LTS-018 chr14 20443534 20848237 404704 * c(SNORD126, PARP2, OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, CCNB1IP1, TEP1, OR4K15, RPPH1, TTC5) 0.400639120835742 10 0.140694349566711 0.838985606307161 650 0.61940645100512 2 1 1 -6.75409426571304 LTS-018 chr14 20848238 20869819 21582 * TEP1 0.492 1 NA 0.837981303691019 147 0.17425769079507 2 2 0 -5.76550926480128 LTS-018 chr14 20869820 22471696 1601877 * c(EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, RNASE7, RAB2B, TMEM55B, TOX4) 0.445319891874153 79 0.0454136886397865 0.818372865291811 2725 0.225708431119509 2 1 1 -6.85406528913603 LTS-018 chr14 22471697 22991095 519399 * character(0) 0.45557527449793 26 0.029311693649726 0.977732962590957 629 0.239864988182035 2 1 1 -7.51017388522289 LTS-018 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.779 1 NA NA NA NA NA LTS-018 chr14 22992444 45433155 22440712 * c(MIR208B, SLC25A21-AS1, LOC100288846, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR4503, MIR548AI, MIR4707, PTCSC3, LINC00609, DHRS2, EFS, IRF9, PRMT5, SEC23A, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, NA, CMA1, C14orf28, TRAPPC6B, MRPL52, PSMB11, LTB4R, MIPOL1, MDP1, LRFN5, CTSG, DAD1, CLEC14A, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, NA NA NA NA NA NA NA NA NA LTS-018 FAM179B, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NGDN, LRP10, NKX2-8, TINF2, CIDEB, IGBP1P1, LINC00639, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, FOXA1, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MIA2, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OXA1L, PAX9, EMC9, PCK2, GMPR2, SLC22A17, MBIP, PNN, KLHL28, HAUS4, PPP2R3C, C14orf119, RNF31, RBM23, DHRS4-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, IL25, SRP54, SSTR1, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, FSCB, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, GEMIN2, AJUBA, ZFHX2, AP1G2, SLC25A21, SLC7A7, CARMIL3, PPP1R3E, CPNE6, AKAP6, KIAA0391, REC8) 0.433860870842778 205 0.107311327875427 0.801868587344258 12340 0.242135311762423 2 1 1 -6.74665198976937 LTS-018 NA NA NA NA LTS-018 chr14 45433156 45464798 31643 * FAM179B NA 0 NA 0.800425591436959 17 0.10854197480292 2 NA NA -5.76444917689303 LTS-018 chr14 45464799 45464987 189 * FAM179B NA 0 NA 0.581 1 NA NA NA NA NA LTS-018 chr14 45464988 45515838 50851 * FAM179B 0.309 1 NA 0.574089447292745 61 0.0967770831609251 1 1 0 -5.8162486369994 LTS-018 chr14 45515839 45679770 163932 * c(SNORD127, FKBP3, FAM179B, PRPF39, MIS18BP1, FANCM) 0.244610730230351 12 0.131820355258989 0.589742088872057 441 0.215139986092194 1 1 0 -6.81769305621825 LTS-018 chr14 45679771 45686220 6450 * MIS18BP1 NA 0 NA 0.799 1 NA NA NA NA NA LTS-018 chr14 45686221 50579417 4893197 * c(MIR548Y, LINC00871, LINC00648, NA, LRR1, KLHDC1, RPL10L, MDGA2, LINC01599, KLHDC2, LINC01588, ARF6, MGAT2, POLE2, DNAAF2, MIS18BP1, RPL36AL, RPS29, VCPKMT, NEMF) 0.272514837538187 9 0.241950924776079 0.783186846248257 1045 0.304869976528517 2 2 0 -6.92951372930744 LTS-018 chr14 50579418 50788249 208832 * c(ATP5S, SOS2, VCPKMT, L2HGDH) 0.378 1 NA 0.767222201671753 303 0.192085407324088 2 2 0 -5.76916785390722 LTS-018 chr14 50788250 65488860 14700611 * c(KTN1-AS1, OTX2-AS1, MIR4308, CHURC1-FNTB, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, FRMD6, SOCS4, NAA30, GPHB5, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, TMEM30B, ESR2, NID2, ATG14, ZBTB1, DAAM1, SAMD4A, SYNE2, FNTB, PLEKHG3, GCH1, TIMM9, ATP5S, KCNH5, GMFB, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, NA NA NA NA NA NA NA NA NA LTS-018 RAB15, PSMA3-AS1, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MAX, MNAT1, TEX21P, MTHFD1, SIX6, OTX2, ATL1, NIN, DACT1, JKAMP, DHRS7, C14orf166, SIX4, GNG2, TMEM260, PPM1A, FBXO34, C14orf105, PPP2R5E, AP5M1, PRKCH, ACTR10, PSMA3, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, PYGL, ARID4A, SAV1, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SPTB, STYX, CCDC175, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZBTB25, DDHD1, SGPP1, TMX1, SYT16, CDKL1, CHURC1, MAPK1IP1L, AKAP5, KIAA0586, DLGAP5) 0.436652110329563 209 0.0774126560297549 0.785518092888603 11212 0.24224189419894 2 1 1 -6.77328599587567 LTS-018 NA NA NA NA LTS-018 chr14 65488861 65494108 5248 * c(CHURC1-FNTB, FNTB, MAX) NA 0 NA 0.993 1 NA NA NA NA NA LTS-018 chr14 65494109 65544802 50694 * c(CHURC1-FNTB, MIR4706, FNTB, MAX) NA 0 NA 1.00826839268989 129 0.180305200922356 3 NA NA -5.76972241622886 LTS-018 chr14 65544803 65550502 5700 * MAX NA 0 NA 0.728 1 NA NA NA NA NA LTS-018 chr14 65550503 68053802 2503300 * c(LOC100506321, MIR4708, GPHN, FAM71D, TMEM229B, EIF2S1, FUT8, PLEK2, MAX, LINC00238, ATP6V1D, PLEKHH1, MPP5, FUT8-AS1) 0.440239769342142 22 0.102470056865957 0.813111825625272 1032 0.219397134818917 2 1 1 -6.75794860803369 LTS-018 chr14 68053803 68054742 940 * PLEKHH1 0 1 NA 0.957665640963649 17 0.624721043629028 3 3 0 -5.76443337322344 LTS-018 chr14 68054743 68249499 194757 * c(VTI1B, RDH12, ZFYVE26, ARG2, RDH11, PIGH, PLEKHH1) 0.301381365029736 9 0.222998006966679 0.779602849759941 514 0.255731878393003 2 1 1 -6.91546636515558 LTS-018 chr14 68249500 68257485 7986 * ZFYVE26 0.426 1 NA 0.751184381858571 51 0.112022868813715 2 2 0 -5.7657195338028 LTS-018 chr14 68257486 73989983 5732498 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, ACTN1-AS1, ERH, PCNX1, ZFYVE26, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, PLEKHD1, MAP3K9, COX16, ZFYVE1, EXD2, SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, RBM25, RAD51B, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, RGS6, SUSD6) 0.430862946914767 87 0.0978806533156804 0.789288668116942 4059 0.210624943957135 2 1 1 -6.74093944321374 LTS-018 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0 1 NA NA NA NA NA LTS-018 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.136924436212656 43 0.203119462527809 0 NA NA -5.81539173789358 LTS-018 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.733 1 NA NA NA NA NA LTS-018 chr14 74035793 74416825 381033 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, COQ6, ZNF410, ACOT1, ACOT6, DNAL1, ELMSAN1, PNMA1) 0.427819650667083 28 0.0995930542509188 0.737164328530547 735 0.216139847754795 2 1 1 -6.76242416178312 LTS-018 chr14 74416826 75016728 599903 * c(MIR4709, NPC2, ISCA2, FAM161B, VSX2, LTBP2, ALDH6A1, COQ6, VRTN, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.443225627141205 36 0.0843832338721986 0.826149074407274 1200 1.27212044955045 2 1 1 -6.75837080172038 LTS-018 chr14 75016729 75079047 62319 * LTBP2 NA 0 NA 0.469574664801638 59 0.0971792074650236 1 NA NA -5.78616700479243 LTS-018 chr14 75079048 75127856 48809 * character(0) NA 0 NA 0.757 1 NA NA NA NA NA LTS-018 chr14 75127857 77254836 2126980 * c(BATF, TMED10, C14orf1, IFT43, JDP2, DLST, ESRRB, VASH1, TTLL5, ANGEL1, FOS, MLH3, PROX2, FCF1, PGF, FLVCR2, GPATCH2L, YLPM1, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1, AREL1) 0.43857754107999 23 0.117523927426659 0.793554270246013 2515 0.299488125257045 2 1 1 -6.74014352206361 LTS-018 chr14 77254837 77257087 2251 * ANGEL1 0 1 NA 0.900335436400621 25 0.714518894081885 2 2 0 -5.76444984483488 LTS-018 chr14 77257088 78139232 882145 * c(MIR1260A, AHSA1, NOXRED1, LRRC74A, ISM2, SAMD15, ANGEL1, ZDHHC22, TMED8, GSTZ1, POMT2, TMEM63C, NGB, VIPAS39, IRF2BPL, CIPC, ALKBH1, SPTLC2) 0.358247277545201 27 0.178895145083574 0.824074406555152 1608 0.24144983659307 2 1 1 -6.82825702709726 LTS-018 chr14 78139233 78139988 756 * ALKBH1 0.429 1 NA 0.658436641370191 15 0.0714601454025416 2 2 0 -5.76762274214316 LTS-018 chr14 78139989 102931796 24791808 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR3173, TUNAR, MEG9, MIR2392, DIO2-AS1, MIR5698, LINC00911, FBLN5, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, SERPINA3, AK7, IFI27L1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, CEP128, TTC7B, SYNE3, EML5, DIO2, DIO3, DYNC1H1, EML1, SNW1, DICER1, FLRT2, LINC00521, NA NA NA NA NA NA NA NA NA LTS-018 SERPINA11, GALC, TMEM251, TCL6, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, GTF2A1, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, KCNK13, C14orf132, PSMC1, DDX24, ADCK1, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, SEL1L, MOAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 BCL11B, MIR539, MIR376A2, MIR487B, SNORA79, MIR411, MIR654, MIR655, MIR656, TSHR, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, TCL1A, SLIRP, IFI27L2, SETD3, HHIPL1, GON7, GPR65, STON2, SERPINA6, DLK1, CCNK, ALKBH1, FAM181A, EFCAB11, WDR20, RPS6KA5, TRIP11, NRXN3, TCL1B, TECPR2, GOLGA5 NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ) 0.443784555015739 283 0.0799067207985021 0.805445554014071 13930 0.248946234838171 2 1 1 -6.79259234085978 LTS-018 NA NA NA NA LTS-018 chr14 102931797 102965435 33639 * TECPR2 0.468 1 NA 0.834182488935662 31 0.222047645763803 2 2 0 -5.76528489435957 LTS-018 chr14 102965436 106436780 3471345 * c(ZBTB42, LINC00605, MIR4309, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, ANKRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, EIF5, ELK2AP, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, TMEM121, AMN, APOPT1, ADAM6, BTBD6, NA NA NA NA NA NA NA NA NA LTS-018 MTA1, EXOC3L4, BAG5, C14orf2, CDC42BPB, FAM30A, TECPR2) 0.425500598938365 119 0.0910043901769415 0.786665929566119 5379 0.22985591561774 2 1 1 -6.73911702778075 LTS-018 NA NA NA NA LTS-018 chr14 106436781 106437080 300 * ADAM6 0.437 1 NA 1.11198764506504 3 0.469099491934636 3 3 0 -5.76441054842166 LTS-018 chr14 106437081 107283157 846077 * c(LINC00226, LINC00221, ADAM6) 0.359716459083536 54 0.0924305488417621 0.814239237726107 374 0.337395889743733 2 1 1 -7.02846733551127 LTS-018 chr15 20169987 20445987 276001 * character(0) 0.463 1 NA 0.77358652500515 23 0.19836662069394 2 2 0 -5.7679923287579 LTS-018 chr15 20445988 20875072 429085 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.273199345996443 15 0.204080119654255 0.815693757761451 87 0.496645962407234 3 2 1 -6.93469573175924 LTS-018 chr15 20875073 20876434 1362 * NBEAP1 NA 0 NA 0.611 1 NA NA NA NA NA LTS-018 chr15 20876435 21936464 1060030 * c(POTEB, LINC01193, NF1P2, NBEAP1, LOC646214) 0.36345820997007 5 0.186504155449684 0.592392951157864 39 0.370052797414766 2 1 1 -7.18137324581816 LTS-018 chr15 21936465 22319174 382710 * c(POTEB, NF1P2, LOC646214, CXADRP2, LOC727924) 0.136 1 NA 0.897551895449882 11 0.92883209168582 2 2 0 -5.76820538023518 LTS-018 chr15 22319175 22833673 514499 * c(GOLGA8DP, TUBGCP5, OR4N4, GOLGA6L1, OR4M2, OR4N3P, REREP3, LOC727924) 0.144002671178749 10 0.0346474305604968 0.620723159895596 144 0.538524193751074 2 2 0 -6.83776932121118 LTS-018 chr15 22833674 22835934 2261 * TUBGCP5 NA 0 NA 1.543 1 NA NA NA NA NA LTS-018 chr15 22835935 28501387 5665453 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-018 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.141924396222151 52 0.0832215849531335 0.843572953914601 2488 0.254893725233136 2 2 0 -6.90480527725401 LTS-018 NA NA NA NA LTS-018 chr15 28501388 28501391 4 * HERC2 NA 0 NA 0.798 1 NA NA NA NA NA LTS-018 chr15 28501392 30502913 2001522 * c(LOC100289656, FAM189A1, DKFZP434L187, APBA2, HERC2P9, WHAMMP2, NSMCE3, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, HERC2) 0.245550391837154 9 0.10969958978957 0.766798536773352 716 0.200659238257387 2 2 0 -7.32953619247171 LTS-018 chr15 30502914 30700198 197285 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.142779342242554 61 0.211884242548702 0 NA NA -6.17701291269365 LTS-018 chr15 30700199 30918365 218167 * ARHGAP11B NA 0 NA 0.457 1 NA NA NA NA NA LTS-018 chr15 30918366 45059909 14141544 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, MIR1282, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, MIR4510, TMCO5B, LOC100996255, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CHRNA7, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, PATL2, EPB42, BAHD1, NA NA NA NA NA NA NA NA NA LTS-018 FAN1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, CCNDBP1, LPCAT4, PLA2G4F, LRRC57, NUTM1, HYPK, GANC, TMEM87A, RPAP1, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283710, FAM98B, PLA2G4D, PDIA3, EHD4, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, LTK, MIR211, MAP1A, MEIS2, MFAP1, TRPM1, GOLGA8B, EIF2AK4, CATSPER2P1, NDUFAF1, NUSAP1, EMC4, SPTBN5, CTDSPL2, KLF13, PLCB2, DLL4, INO80, CKMT1A, PPP1R14D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, B2M, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, RAD51, SERINC4, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, EIF3J-AS1, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TP53BP1, ANP32AP1, GOLGA8O, PIN4P1, OIP5-AS1, TYRO3, CHAC1, KATNBL1, WDR76, TMEM62, SPG11, ELL3, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, ARHGAP11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.131369114192559 262 0.055353113063782 0.786370967404483 15269 0.246293674268441 2 2 0 -6.75857038376715 LTS-018 NA NA NA NA LTS-018 chr15 45059910 45123849 63940 * TRIM69 NA 0 NA 1.74528090310965 39 2.46712363650198 5 NA NA -5.76442283884286 LTS-018 chr15 45123850 45127366 3517 * character(0) NA 0 NA 0.566 1 NA NA NA NA NA LTS-018 chr15 45127367 67665045 22537679 * c(MIR147B, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, NDUFAF4P1, MIR2116, MIR4311, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4511, MIR4712, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, SLC27A2, LACTB, DIS3L, LEO1, MTFMT, SLC51B, TERB2, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, MGC15885, LCTL, FBN1, FGF7, CEP152, ZNF609, DMXL2, AP4E1, NA NA NA NA NA NA NA NA NA LTS-018 DAPK2, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, BLOC1S6, GATM, FOXB1, HMGN2P46, SLC24A5, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, USP50, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, LIPC, SHC4, CTXN2, DUOXA2, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, DUOX2, MYEF2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, DUOX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, FLJ10038, MNS1, MYO5C, MAPK6, MAP2K1, FAM214A, DTWD1, IGDCC4, SQRDL, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, RFX7, SLC12A1, BNIP2, SNX1, HSP90AB4P, SORD, SCARNA14, MIR628, TCF12, TPM1, CA12, SLC30A4, SPATA5L1, ICE2, AAGAB, SLTM, SNX22, ATP8B4, SEMA6D, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TLN2, FAM96A, C15orf48, MEGF11, CILP, SPPL2A, CGNL1, RAB11A, ALDH1A2, HERC1, SHF, DUOXA1, USP8, CCNB2, SLC28A2, SLC24A1, CCPG1, GCNT3, LDHAL6B, COPS2, TRIP4, PIGB, IGDCC3, SECISBP2L, KIAA0101, USP3) 0.127299610146918 253 0.054645441874975 0.785809254618687 18378 0.226959901800107 2 2 0 -6.79277359548488 LTS-018 NA NA NA NA LTS-018 chr15 67665046 67665713 668 * IQCH NA 0 NA 0.832 1 NA NA NA NA NA LTS-018 chr15 67665714 74572423 6906710 * c(NR2E3, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, C15orf61, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, LINC00593, MYO9A, NEO1, PKM, PML, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, MAP2K5, THAP10, PARP6, ISLR2, BBS4, CELF6, RPLP1, STRA6, IQCH, MIR629, NA NA NA NA NA NA NA NA NA LTS-018 MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, CD276, ANP32A, ADPGK, PIAS1, CALML4, STOML1, KIF23) 0.124605849263367 75 0.0471437403294674 0.826294317450888 5351 0.237324018961461 2 2 0 -6.86031191002469 LTS-018 NA NA NA NA LTS-018 chr15 74572424 86291197 11718774 * c(DNM1P35, NA, UBE2Q2P2, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, NA NA NA NA NA NA NA NA NA LTS-018 SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, IDH3A, TMC3, IL16, IREB2, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, NMB, SCAPER, HDGFRP3, PDE8A, BTBD1, TM6SF1, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, ADAMTSL3, CEMIP, ALPK3, PTPN9, ABHD17C, RASGRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, LOC642423, GOLGA6L4, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, HOMER2, ZNF592, ARNT2 NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ) 0.13497099246474 152 0.0488667491825573 0.793375465453388 10249 0.217595420553851 2 2 0 -6.73532111099565 LTS-018 NA NA NA NA LTS-018 chr15 86291198 86291202 5 * AKAP13 NA 0 NA 1.036 1 NA NA NA NA NA LTS-018 chr15 86291203 88420300 2129098 * c(MIR1276, AKAP13, AGBL1, LINC00052, NTRK3, KLHL25, AGBL1-AS1) 0.109028021494709 20 0.0377836987963969 0.929875002508796 593 0.450657694127518 3 3 0 -6.92483409508159 LTS-018 chr15 88420301 88423493 3193 * NTRK3 NA 0 NA 0.782 1 NA NA NA NA NA LTS-018 chr15 88423494 102516492 14092999 * c(FAM138E, LINC00930, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR3529, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, ADAMTS17, ACAN, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, OR4F4, SLCO3A1, NTRK3-AS1, LINC00928, FAM169B, ANPEP, IDH2, NA NA NA NA NA NA NA NA NA LTS-018 ZNF774, IGF1R, ARPIN, ISG20, KIF7, ZNF710, HDDC3, WASH3P, SPATA41, GDPGP1, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, NTRK3, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, AEN, CRTC3, TTC23, MRPS11, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.130999892509832 234 0.0578517597562307 0.800417958327698 8787 0.246440131521416 2 2 0 -6.73941219940498 LTS-018 NA NA NA NA LTS-018 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.127 1 NA NA NA NA NA LTS-018 chr16 81704 96405 14702 * character(0) 0.429 1 NA 0.921144270678752 3 0.340473689634505 2 2 0 -5.76601824293 LTS-018 chr16 96406 2214007 2117602 * c(LOC100134368, MIR1225, MIR3177, MIR3176, MIR3180-5, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, WDR90, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NA NA NA NA NA NA NA NA NA LTS-018 NTHL1, POLR3K, MSRB1, GNG13, PKD1, LUC7L, SNORA10, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, METRN, SNRNP25, TMEM204, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, ZNF598, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.392671797201882 242 0.0696616148116699 0.940115193252869 6929 0.286868168053939 3 2 1 -7.14212176135984 LTS-018 NA NA NA NA LTS-018 chr16 2214008 2215795 1788 * TRAF7 NA 0 NA 1.143 1 NA NA NA NA NA LTS-018 chr16 2215796 2358603 142808 * c(MIR940, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, BRICD5, PGP, CASKIN1, MLST8, TRAF7) 0.314217064014481 4 0.0360404864932019 1.33046978111161 683 0.257375697538335 4 3 1 -7.01522803839448 LTS-018 chr16 2358604 2367214 8611 * ABCA3 NA 0 NA 1.128 1 NA NA NA NA NA LTS-018 chr16 2367215 2672816 305602 * c(MIR3178, ABCA3, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, ABCA17P, LOC652276, CEMP1, C16orf59, CCNF) 0.354229422975829 10 0.067401285843323 0.984967636316915 607 0.232156281128104 3 2 1 -6.7788425650068 LTS-018 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.235 1 NA NA NA NA NA LTS-018 chr16 2692191 2732840 40650 * c(ERVK13-1, KCTD5, FLJ42627) 0.405 1 NA 0.517657463304454 72 0.230489551801872 1 1 0 -5.76465770835076 LTS-018 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.751 1 NA NA NA NA NA LTS-018 chr16 2747831 2825594 77764 * c(SRRM2-AS1, SRRM2, KCTD5, TCEB2, PRSS27) 0.435757431279187 13 0.0523917687800043 1.0080271465945 361 0.192550870351526 2 1 1 -6.8229930077928 LTS-018 chr16 2825595 2849468 23874 * c(PRSS33, PRSS41, TCEB2) 0.355 1 NA 0.90274290675923 55 0.185513477960634 2 2 0 -5.77092878942201 LTS-018 chr16 2849469 2949481 100013 * c(PRSS21, FLYWCH2, ZG16B, PRSS30P, PRSS41, PRSS22) 0.330967692933446 7 0.159345237650533 1.07261266934286 152 0.322660409078902 3 2 1 -6.75894475699718 LTS-018 chr16 2949482 2972624 23143 * FLYWCH1 NA 0 NA 0.61 1 NA NA NA NA NA LTS-018 chr16 2972625 3811556 838932 * c(LOC100128770, MTRNR2L4, ZNF263, TRAP1, PAQR4, CREBBP, ZNF597, BICDL2, DNASE1, NLRC3, CLUAP1, OR1F2P, LINC00514, LINC00921, MEFV, OR1F1, OR2C1, TNFRSF12A, ZSCAN32, HCFC1R1, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, FLYWCH1, SLX4, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.285344465860773 52 0.0740113623008179 0.567583932238539 2214 0.193852060048986 1 1 0 -7.43455049124384 LTS-018 chr16 3811557 4033436 221880 * c(ADCY9, CREBBP) 0.385 1 NA 0.586277250158349 171 0.151416229574651 1 1 0 -5.888484437201 LTS-018 chr16 4033437 4057566 24130 * ADCY9 NA 0 NA 0.587326003147371 24 0.126534064841123 1 NA NA -5.78454901175282 LTS-018 chr16 4057567 5105365 1047799 * c(LINC01569, NAGPA-AS1, CORO7-PAM16, VASN, ADCY9, ANKS3, UBALD1, SEPT12, C16orf89, C16orf71, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, PPL, ALG1, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.420033880453363 44 0.0448641831086249 0.963616048036606 1899 0.201063523340327 2 1 1 -7.26041474516745 LTS-018 chr16 5105366 5106184 819 * c(C16orf89, ALG1) 0.489 1 NA 1.17827748039925 12 0.31403845547186 3 3 0 -5.7644423309513 LTS-018 chr16 5106185 11650605 6544421 * c(MIR548X, RMI2, TEKT5, C16orf89, ABAT, EEF2KMT, EMP2, CLEC16A, CARHSP1, TMEM186, TMEM114, DEXI, GRIN2A, C16orf72, CIITA, NUBP1, PMM2, RBFOX1, ALG1, PRM1, PRM2, PRM3, TNP2, TVP23A, USP7, METTL22, ATF7IP2, SOCS1, LITAF) 0.408089923806135 61 0.0786496519989939 0.971621230225449 2251 0.301309236340413 3 2 1 -7.4172544730891 LTS-018 chr16 11650606 11690223 39618 * LITAF NA 0 NA 1.296 1 NA NA NA NA NA LTS-018 chr16 11690224 11931240 241017 * c(RSL1D1, ZC3H7A, BCAR4, TXNDC11, SNN) 0.282751466147795 8 0.0473821847171638 1.22727762580675 325 0.334500036893662 4 3 1 -6.76066496942667 LTS-018 chr16 11931241 11931451 211 * RSL1D1 NA 0 NA 0.866 1 NA NA NA NA NA LTS-018 chr16 11931452 14968958 3037507 * c(MIR365A, MIR4718, ERCC4, NOMO1, RSL1D1, GSPT1, PARN, BFAR, CPPED1, MIR193B, MKL2, TNFRSF17, NPIPA3, SHISA9, ABCC6P2, PLA2G10, SNX29) 0.380985017153763 23 0.101884942469318 0.976850796557788 981 0.278120764274603 3 2 1 -7.00798972400906 LTS-018 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.244 1 NA NA NA NA NA LTS-018 chr16 15068593 15123936 55344 * PDXDC1 0.4154627138134 2 0.00424264068711925 1.28406248133352 109 0.261570820080855 7 4 3 -6.89278862677738 LTS-018 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.752 1 NA NA NA NA NA LTS-018 chr16 15125636 24202458 9076823 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, SNX29P1, COQ7, IGSF6, CDR2, ERN2, ERI2, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, ITPRIPL2, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, MPV17L, PDZD9, ANKS4B, GP2, NOMO2, EEF2K, PKD1P1, ACSM2B, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, NOMO3, ABCC1, MYH11, NDUFAB1, METTL9, GDE1, GPRC5B, SYT17, NA NA NA NA NA NA NA NA NA LTS-018 PLK1, RRN3, NDE1, ACSM5, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST2) 0.381653416931132 96 0.104271301307291 0.963616264338134 7230 0.281460965900562 3 2 1 -7.613985914421 LTS-018 NA NA NA NA LTS-018 chr16 24202459 24228983 26525 * PRKCB 0 1 NA 1.00782457005965 67 0.774508356917095 3 3 0 -5.7645626691318 LTS-018 chr16 24228984 24870185 641202 * c(CACNG3, SLC5A11, TNRC6A, PRKCB, RBBP6) 0.290120604876886 14 0.15631962185159 0.976717230943276 566 0.465067205765853 3 2 1 -6.88481085827338 LTS-018 chr16 24870186 24980189 110004 * c(SLC5A11, ARHGAP17) 0.445 1 NA 0.978013851239861 169 0.239248695340297 3 3 0 -5.77730215750306 LTS-018 chr16 24980190 28608421 3628232 * c(LCMT1-AS2, SGF29, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, APOBR, SULT1A2, KDM8, HS3ST4) 0.378305358777336 36 0.0837729925794363 0.940421878792591 1625 0.220927362639201 3 2 1 -7.56671319966147 LTS-018 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.307 1 NA NA NA NA NA LTS-018 chr16 28616944 28712734 95791 * SULT1A1 0.394 2 0.121622366364086 0.537022679180774 77 0.292667003110192 2 1 1 -6.87664104968023 LTS-018 chr16 28712735 28734495 21761 * character(0) NA 0 NA 1.101 1 NA NA NA NA NA LTS-018 chr16 28734496 33961448 5226953 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, NA NA NA NA NA NA NA NA NA LTS-018 ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, LINC00273, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.376619770816373 106 0.0914670002207356 0.942074748947926 6871 0.211075631308091 3 2 1 -7.92398752690552 LTS-018 NA NA NA NA LTS-018 chr16 33961449 33961453 5 * LINC00273 0.303 1 NA 0.273 1 NA NA NA NA NA LTS-018 chr16 33961454 33965652 4199 * LINC00273 0.35803671974565 60 0.102460491214355 0.545581654844908 97 0.30743945322113 3 2 1 -6.74776474009103 LTS-018 chr16 33965653 34256927 291275 * character(0) NA 0 NA 0.588921736709111 8 0.107445334938284 1 NA NA -6.09606949534108 LTS-018 chr16 34256928 34682380 425453 * c(LINC01566, UBE2MP1) NA 0 NA 0.770104585446103 107 0.200038655671859 2 NA NA -5.77164419974665 LTS-018 chr16 46508169 46602819 94651 * ANKRD26P1 0.464 1 NA 0.719087444082816 97 0.205123541058114 2 2 0 -5.77848518145983 LTS-018 chr16 46602820 58327840 11725021 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, KATNB1, CES1, CETP, NUDT21, ADCY7, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, CYLD, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, ZNF423, RPGRIP1L, ARL2BP, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, CCDC113, CFAP20, BRD7, MT1DP, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, NA NA NA NA NA NA NA NA NA LTS-018 MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, PHKB, POLR2C, LPCAT2, HEATR3, OGFOD1, DOK4, VPS35, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, SIAH1, SLC6A2, SLC12A3, FTO, IRX6, IRX3, USB1, SHCBP1, FAM192A, CHD9, ITFG1, NETO2, LONP2, NLRC5, DRC7, CAPNS2, MT4, GPT2, ABCC11, NKD1, CBLN1, RSPRY1, MYLK3, ADGRG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.4280924851095 150 0.0937523760176165 0.706511804240132 8256 0.196454323524439 2 1 1 -8.61632245617673 LTS-018 NA NA NA NA LTS-018 chr16 58327841 58426203 98363 * PRSS54 NA 0 NA 0.412 1 NA NA NA NA NA LTS-018 chr16 58426204 58616778 190575 * c(CNOT1, GINS3, NDRG4, SNORA46, SNORA50A, SETD6) NA 0 NA 0.525470442116153 492 0.122950023208932 1 NA NA -5.77542936289299 LTS-018 chr16 58616779 69975360 11358582 * c(CDH3, CDH5, MIR1538, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CNOT1, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NA NA NA NA NA NA NA NA NA LTS-018 NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, SLC38A7, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, APOOP5, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.435859847229639 66 0.0766210074841018 0.694779578073278 7412 0.160310602525694 2 1 1 -9.66680221033725 LTS-018 NA NA NA NA LTS-018 chr16 69975361 69988373 13013 * c(WWP2, CLEC18C, CLEC18A) 0.302 1 NA 0.770462727271062 11 0.166663406028711 2 2 0 -5.76472048743452 LTS-018 chr16 69988374 70871792 883419 * c(SNORD111B, VAC14-AS1, MIR1972-1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, PDXDC2P, CLEC18C, CLEC18A, HYDIN, PDPR, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.30314007710389 13 0.154464459442194 0.699493558683745 1426 0.216505419959021 2 1 1 -7.27506980925093 LTS-018 chr16 70871793 70874035 2243 * HYDIN NA 0 NA 0.841 1 NA NA NA NA NA LTS-018 chr16 70874036 71196616 322581 * HYDIN 0.348529931502762 77 0.0563129802354115 1.03745055032173 554 0.291496116170279 3 2 1 -6.78347566262719 LTS-018 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.765 1 NA NA NA NA NA LTS-018 chr16 71209484 71416545 207062 * c(HYDIN, CMTR2, CALB2) 0.38232579672197 7 0.16702280996205 0.708874835950456 133 0.349558249036019 2 1 1 -6.78746171381075 LTS-018 chr16 71416546 71423906 7361 * CALB2 0.436 1 NA 0.804806816493797 41 0.142308369224089 2 2 0 -5.76443363290778 LTS-018 chr16 71423907 71497660 73754 * c(ZNF23, CALB2) NA 0 NA 0.682544478987288 99 0.127603284546949 2 NA NA -5.82850433596532 LTS-018 chr16 71497661 71500857 3197 * ZNF23 NA 0 NA 0.349 1 NA NA NA NA NA LTS-018 chr16 71500858 71928804 427947 * c(SNORA70D, CHST4, AP1G1, PHLPP2, ATXN1L, ZNF821, TAT, SNORD71, ZNF19, ZNF23, MARVELD3, IST1) 0.266 1 NA 0.464771980418846 692 0.105698342615976 1 1 0 -5.9243450846222 LTS-018 chr16 71928805 71948682 19878 * IST1 NA 0 NA 0.734 1 NA NA NA NA NA LTS-018 chr16 71948683 90123940 18175258 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DHODH, DPEP1, SNAI3-AS1, NA NA NA NA NA NA NA NA NA LTS-018 LINC00311, LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, TXNL4B, BANP, RFWD3, ZDHHC7, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.427794161617685 364 0.0884099182698001 0.694420158923704 11947 0.293155328248643 2 1 1 -8.48923199065255 LTS-018 NA NA NA NA LTS-018 chr16 90123941 90161242 37302 * PRDM7 NA 0 NA 0.653897698923462 75 0.105907697361242 2 NA NA -5.84107211075936 LTS-018 chr17 6004 260299 254296 * c(LOC100506388, C17orf97, DOC2B, RPH3AL) 0.105 1 NA 0.791149060366243 111 0.23887737165667 2 2 0 -5.76453141861757 LTS-018 chr17 260300 4594796 4334497 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, P2RX5-TAX1BP3, MYBBP1A, PRPF8, SMYD4, OVCA2, SLC43A2, CYB5D2, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, RAP1GAP2, ZZEF1, CLUH, SMG6, SHPK, ALOX15, OR1A2, PELP1, LOC284009, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, SMTNL2, RFLNB, ITGAE, OR3A4P, C17orf97, MIR132, MIR212, MIR22, MNT, ASPA, MYO1C, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, NA NA NA NA NA NA NA NA NA LTS-018 GEMIN4, GLOD4, ANKFY1, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, NCBP3, TSR1, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, BHLHA9, TLCD2, UBE2G1, TRPV1, YWHAE, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, CAMKK1, SPATA22, MIR22HG, SCARF1, SGSM2) 0.132264021043931 152 0.0463630764224107 0.801963966182466 6063 0.25484394543477 2 2 0 -6.73716087230508 LTS-018 NA NA NA NA LTS-018 chr17 4594797 4607174 12378 * PELP1 NA 0 NA 0.351 1 NA NA NA NA NA LTS-018 chr17 4607175 4635088 27914 * c(LOC101559451, PELP1, MED11, ARRB2) NA 0 NA 0.538036934386259 80 0.108335939517499 1 NA NA -5.76986146294667 LTS-018 chr17 4635089 20924620 16289532 * c(MIR744, LOC100128288, FAM106CP, C17orf107, LOC100130950, LOC100287072, LINC00675, MIR1288, MIR1180, MIR4314, NA, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, EPN2-AS1, COX10-AS1, EPN2-IT1, TMEM220-AS1, PEMT, CLEC10A, FBXW10, TRIM16, RAI1, KIF1C, GRAP, CHD3, AKAP10, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, NA NA NA NA NA NA NA NA NA LTS-018 USP43, KRBA2, ZFP3, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, CLDN7, SMCR5, SMCR8, NA, TOM1L2, DNAH2, SLC47A2, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, TRIM16L, MFSD6L, SLC16A11, FBXO39, USP32P1, DLG4, DNAH9, DRG2, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, CENPV, FLCN, PLD6, SLC16A13, C17orf74, ENO3, ALDH3A1, USP32P2, ALDH3A2, FGF11, NLRP1, ARHGEF15, EPN2, FOXO3B, CAMTA2, KDM6B, FLII, MPRIP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 WSCD1, USP22, CTDNEP1, TNFRSF13B, PIK3R5, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15B, TBC1D28, TMEM256, BCL6B, CDRT15L2, RNF167, SENP3, SNORA67, SNORD49A, B9D1, GP1BA, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, CCDC144B, SLC13A5, TMEM102, LGALS9B, GPS2, RANGRF, GUCY2D, LOC339166, TMEM95, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LRRC75A, SLC25A35, LLGL1, MED11, KRT16P2, GRAPL, TNFSF12-TNFSF13, MEIS3P1, MFAP4, ASGR1, ASGR2, MIR324, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, NUP88, MINK1, MED31, DERL2, TVP23B, YBX2, MYO15A, TRPV2, RASD1, PER1, PFAS, PFN1, PLD2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, ALKBH5, TTC19, SLC52A1, MED9, WRAP53, SLC47A1, MAPK7, PRPSAP2, DHX33, PSMB6, NT5M, ADPRM, PLSCR3, ZNF286A, ZNF287, MIR497, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZNF624, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, SLC35G6, RNF222, PIRT, CDRT15P2, FAM83G, KRT16P3, EVPLL, TEKT3, SHBG, SHMT1, SLC2A4, SNORA48, SNORD10, LGALS9C, SOX15, SREBF1, SCARNA21, SNORA59A, VAMP2, SNORD49B, SNORD65, MIR33B, C1QBP, TOP3A, TP53, LOC728392, KRT16P1, ZNF286B, UBB, ZNF18, RNF112, ZNF232, MIS12, GID4, PHF23, FAM106A, CTC1, NDEL1, PITPNM3, DRC3, TEKT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SLC25A11, ZMYND15, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, MGC12916, TXNDC17, GAS7, COPS3, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, ATPAF2, KCNAB3, AURKB, TMEM88, SPECC1, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, FXR2, MPDU1, SPAG7, NCOR1, CD68, ULK2, CCDC144A, ACAP1, KIAA0753, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.129224030439855 468 0.0590053586593528 0.815305041383404 19996 0.341868384044521 2 2 0 -6.78420737554661 LTS-018 NA NA NA NA LTS-018 chr17 20924621 21194769 270149 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.417 1 NA 0.741710473289689 111 0.15621103399468 2 2 0 -5.79795455689001 LTS-018 chr17 21194770 21318552 123783 * c(KCNJ12, MAP2K3) 0.406632139433836 67 0.0623580142064808 0.796476656606537 152 0.215000606725416 2 1 1 -6.79006473325424 LTS-018 chr17 21318553 21318555 3 * KCNJ12 0.203 1 NA 0.914 1 NA NA NA NA NA LTS-018 chr17 21318556 22066835 748280 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.308437673999794 59 0.0875002179174042 0.801116394935383 299 0.28145210095839 3 2 1 -7.4532022886638 LTS-018 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.81 1 NA NA NA NA NA LTS-018 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.13 1 NA 0.838158207612009 17 0.219043508973741 2 2 0 -5.76472056534807 LTS-018 chr17 25630389 27085601 1455213 * c(SPAG5-AS1, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, TMEM199, PROCA1, LYRM9, ALDOC, SARM1, PPY2P, PYY2, POLDIP2, WSB1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, TBC1D3P5, NOS2, NLK, FAM222B, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, PIGS, TRAF4, KIAA0100) 0.152243149384148 24 0.0558354044608289 0.817859840618715 2550 0.198401387904783 2 2 0 -6.80451220357665 LTS-018 chr17 27085602 27287917 202316 * c(MIR451B, MIR4732, SEZ6, DHRS13, FLOT2, ERAL1, MIR144, FAM222B, MIR451A, PHF12) 0.0917629407473064 8 0.0160039057732792 1.0334012806666 468 0.296504656836364 3 3 0 -6.85711389949863 LTS-018 chr17 27287918 27288016 99 * SEZ6 NA 0 NA 1.166 1 NA NA NA NA NA LTS-018 chr17 27288017 27494052 206036 * c(SEZ6, MYO18A, PIPOX, TIAF1) 0.0899100455078835 3 0.0148436293854749 1.28703211202431 379 0.251371104630232 3 3 0 -7.00556886296226 LTS-018 chr17 27494053 29219741 1725689 * c(MIR3184, MIR4523, ABHD15, ANKRD13B, CPD, CRYBA1, LRRC37BP1, TBC1D29, GIT1, EFCAB5, TMIGD1, MYO18A, SUZ12P1, MIR423, CRLF3, NUFIP2, TAOK1, BLMH, SH3GL1P2, SLC6A4, ATAD5, NSRP1, CORO6, SSH2, TP53I13, GOSR1) 0.0812274512567356 12 0.0606951523200289 0.804368306236841 1908 0.259150902903236 2 2 0 -7.17359713200996 LTS-018 chr17 29219742 29630982 411241 * c(MIR4733, EVI2B, NF1, OMG, DPRXP4, ADAP2, TEFM, ATAD5, RNF135) 0.0410179568882333 2 0.0763675323681471 1.00934101690798 416 0.350919132075638 4 4 0 -7.05970648200219 LTS-018 chr17 29630983 29704560 73578 * c(EVI2A, EVI2B, NF1) 0.0767300095500167 5 0.0441565397195025 1.20848425736046 319 0.420689008241635 4 4 0 -6.73793513322543 LTS-018 chr17 29704561 30192492 487932 * c(MIR365B, MIR4724, MIR4725, MIR193A, NF1, COPRS, UTP6, RAB11FIP4) 0.116815980660798 12 0.0471946324631661 0.909426668385775 337 0.308056735881972 2 2 0 -6.87558911318267 LTS-018 chr17 30192493 30195028 2536 * UTP6 NA 0 NA 0.629 1 NA NA NA NA NA LTS-018 chr17 30195029 33998038 3803010 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, SUZ12, TMEM98, SLFN14, LIG3, ASIC2, C17orf102, MYO1D, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, UTP6, PSMD11, RAD51D, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, SH3GL1P1, SNORD7, MIR632, ZNF207, CDK5R1, ZNF830, SLFN11) 0.129345148048356 47 0.0506761041326655 0.778104012888164 3091 0.258096143282855 2 2 0 -6.75941533471858 LTS-018 chr17 33998039 33998869 831 * AP2B1 NA 0 NA 1.099 1 NA NA NA NA NA LTS-018 chr17 33998870 34432861 433992 * c(C17orf50, AP2B1, RDM1, GAS2L2, HEATR9, CCL15-CCL14, LYZL6, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, MMP28, TAF15, RASL10B) 0.065750494317241 6 0.0651083711975657 1.01017595819053 672 0.231764999300826 3 3 0 -6.9117095339068 LTS-018 chr17 34432862 34640942 208081 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.543714548962064 39 0.63819921882981 1 NA NA -5.76601348841435 LTS-018 chr17 34640943 34640956 14 * c(CCL4L1, NA) NA 0 NA 2.258 1 NA NA NA NA NA LTS-018 chr17 34640957 36214044 1573088 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.130858720264902 13 0.0525468045333555 0.789226140487289 1540 0.223005654187171 2 2 0 -6.73854595500837 LTS-018 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.524 1 NA NA NA NA NA LTS-018 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) 0.149951850441255 2 0.147078210486802 0.569650582202829 71 0.247160785569923 1 1 0 -6.86570482758461 LTS-018 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.713 1 NA NA NA NA NA LTS-018 chr17 36421727 37604150 1182424 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, LOC440434, GPR179, FBXO47, MED1, CWC25, PSMB3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, MRPL45, FBXL20, RPL23) 0.121913083667591 34 0.0348014101175162 0.822406247493605 2119 0.190303122211903 2 2 0 -6.83807631999179 LTS-018 chr17 37604151 37607141 2991 * MED1 NA 0 NA 1.67 1 NA NA NA NA NA LTS-018 chr17 37607142 37949204 342063 * c(MIR4728, STARD3, ERBB2, IKZF3, GRB7, NEUROD2, CDK12, PNMT, MED1, PPP1R1B, MIEN1, TCAP, PGAP3) 0.0627624137025466 4 0.053118578043217 1.068457455315 935 0.246866318383859 4 4 0 -6.99326547661764 LTS-018 chr17 37949205 37985548 36344 * IKZF3 NA 0 NA 0.714 1 NA NA NA NA NA LTS-018 chr17 37985549 38146471 160923 * c(LRRC3C, ZPBP2, IKZF3, GSDMA, GSDMB, PSMD3, ORMDL3) 0.133081180498175 12 0.0564027723367631 0.803399022499252 309 0.23495888642217 2 2 0 -6.73393474375163 LTS-018 chr17 38146472 38151207 4736 * PSMD3 NA 0 NA 1.233 1 NA NA NA NA NA LTS-018 chr17 38151208 38209900 58693 * c(SNORD124, CSF3, PSMD3, MED24) 0.101051453211949 11 0.0406351840381975 1.03014168489312 237 0.261756481943109 3 3 0 -6.73604008863009 LTS-018 chr17 38209901 40500653 2290753 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, EIF1, P3H4, NT5C3B, CCR7, GJD3, KRT222, KRT40, CNP, LINC00974, WIPF2, KRT25, TMEM99, KRT28, KRT24, ZNF385C, CASC3, KCNH4, GAST, KRT23, KAT2A, KRT42P, NKIRAS2, HCRT, KLHL10, MSL1, KRT27, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, KRT39, NA NA NA NA NA NA NA NA NA LTS-018 ACLY, RAPGEFL1, KRT20, KLHL11, RAB5C, RARA, FKBP10, KRTAP4-11, SMARCE1, STAT3, STAT5A, STAT5B, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, DHX58, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, GHDC, KRTAP4-4, TNS4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, KRT38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 KRT37, KRT36, HAP1, HSPB9, NR1D1, MED24, CDC6) 0.14066373986942 156 0.0504081845567368 0.83765228817407 5378 0.262115667509097 2 2 0 -6.79066363660407 LTS-018 NA NA NA NA LTS-018 chr17 40500654 40556718 56065 * c(PTRF, STAT3) NA 0 NA 1.112 1 NA NA NA NA NA LTS-018 chr17 40556719 41466073 909355 * c(LINC00910, RAMP2-AS1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, TMEM106A, CNTD1, RUNDC1, FAM134C, EZH1, G6PC, TUBG2, CCR10, PTRF, COA3, PSMC3IP, AOC2, HSD17B1, IFI35, LINC00671, NBR1, NAGLU, ATP6V0A1, RPL27, WNK4, BRCA1, MLX, TUBG1, PLEKHH3, COASY, AARSD1, RND2, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.113608493366338 40 0.0743126451606268 1.06391785238968 2172 0.330586745419972 3 3 0 -6.75844226895222 LTS-018 chr17 41466074 41522213 56140 * c(LINC00910, MIR2117, ARL4D) 0.069 1 NA 1.15261078892661 23 0.135435733632834 3 3 0 -5.77066844686027 LTS-018 chr17 41522214 41573725 51512 * c(MIR2117, DHX8) NA 0 NA 0.984201208874286 55 0.225230570973414 3 NA NA -5.77044132132252 LTS-018 chr17 41573726 41576187 2462 * DHX8 NA 0 NA 1.362 1 NA NA NA NA NA LTS-018 chr17 41576188 41739321 163134 * c(DHX8, ETV4, MEOX1) 0.06580450187183 3 0.00665832811847939 1.59128930367476 200 0.405631927587551 5 5 0 -6.75572192587918 LTS-018 chr17 41739322 41832710 93389 * SOST NA 0 NA 0.984 1 NA NA NA NA NA LTS-018 chr17 41832711 44159874 2327164 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DUSP3, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0879709578275148 114 0.0294270456709952 1.10235525464888 3818 0.39095484854927 3 3 0 -6.81802186843333 LTS-018 chr17 44159875 44364142 204268 * character(0) 0.130637379800619 16 0.0631516692838228 0.760628335266146 86 0.33202818452878 2 2 0 -6.73839456894234 LTS-018 chr17 44364143 44364209 67 * character(0) 0.129 1 NA 1.737 1 NA NA NA NA NA LTS-018 chr17 44364210 45196190 831981 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.100682946827203 6 0.0388814437317683 1.06625412893588 266 0.516744164999747 3 3 0 -6.73485082169944 LTS-018 chr17 45196191 45214473 18283 * CDC27 0.363 1 NA 0.998724829648025 67 0.20046143174528 3 3 0 -5.76637689135473 LTS-018 chr17 45214474 45221318 6845 * CDC27 0.365620812342953 17 0.0635177140646607 0.787481770630665 47 0.350804071758378 3 2 1 -6.73684855385995 LTS-018 chr17 45221319 45249365 28047 * CDC27 0.227 1 NA 0.864363803002229 33 0.191459842296293 2 2 0 -5.76747815232796 LTS-018 chr17 45249366 46507501 1258136 * c(MIR1203, CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, ITGB3, KPNB1, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0998067240674662 19 0.0434518621866242 1.04543030267472 1486 0.277574918111429 3 3 0 -6.74824373386926 LTS-018 chr17 46507502 46606518 99017 * SKAP1 NA 0 NA 1.235 1 NA NA NA NA NA LTS-018 chr17 46606519 46677932 71414 * c(HOXB-AS1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB-AS3, MIR10A) NA 0 NA 1.49980419348459 401 1.46022935683044 4 NA NA -5.76455445419324 LTS-018 chr17 46677933 46679399 1467 * c(HOXB6, HOXB-AS3) NA 0 NA 1.03 1 NA NA NA NA NA LTS-018 chr17 46679400 54672962 7993563 * c(TOM1L1, MIR3185, C17orf112, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, COX11, EME1, ANKFN1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, MMD, STXBP4, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, HLF, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, HILS1, TOB1-AS1, HOXB-AS3, MIR196A1, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, NA NA NA NA NA NA NA NA NA LTS-018 LUC7L3, PHB, MBTD1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, CA10, PCTP, XYLT2, SGCA, SPATA20, UBE2Z, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PRAC1, KIF2B, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40, NOG) 0.0937033506271634 107 0.0315049656989572 1.05005704102654 5710 0.346318631298826 3 3 0 -6.79797073471532 LTS-018 NA NA NA NA LTS-018 chr17 54672963 54872368 199406 * C17orf67 NA 0 NA 1.813 1 NA NA NA NA NA LTS-018 chr17 54872369 54976661 104293 * c(MIR3614, MTVR2, C17orf67, TRIM25, DGKE) 0.060382006513715 10 0.0266668749991862 1.49777575975057 133 0.533088980499595 5 5 0 -6.75019415961937 LTS-018 chr17 54976662 54978815 2154 * TRIM25 NA 0 NA 0.673 1 NA NA NA NA NA LTS-018 chr17 54978816 79479445 24500630 * c(SNORA38B, LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00674, LINC00673, MIR3678, MIR3615, TSPOAP1-AS1, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4729, MIR4737, MIR4736, MIR4738, MIR4740, MIR4524A, MIR4730, MIR3064, MIR5047, CEP295NL, MIR4524B, LOC100996291, DNAH17-AS1, CDK3, DCAF7, ABCA10, ABCA9, ABCA8, BAIAP2, ATP5H, APPBP2, NA NA NA NA NA NA NA NA NA LTS-018 ST6GALNAC2, GNA13, SEPT9, CD300C, TLK2, POLG2, CD300A, TMC6, DDX42, CYGB, RNF157, C1QTNF1, FTSJ3, CLTC, METTL23, HSF5, OR4D2, MSI2, SLC38A10, CANT1, USH1G, CD300LB, KIF19, C17orf64, TBC1D16, AFMID, DYNLL2, CSH1, CSH2, CSHL1, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, TCAM1P, EFCAB3, LOC146880, TMC8, AANAT, CYB561, MARCH10, ACE, DDX5, CEP112, SLC39A11, AMZ2P1, TRIM65, UNC13D, ERN1, EVPL, BPTF, FDXR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PPM1E, ARSG, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, WBP2, CDC42EP4, GAA, GALK1, NOL11, TANC2, NAT9, PITPNC1, OR4D1, GH1, GH2, CACNG5, CACNG4, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, C17orf58, MILR1, C17orf47, SLC26A11, ENDOV, GDPD1, NDUFAF8, LINC00482, TMEM105, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ICAM2, METTL2A, ENPP7, MRPL58, CD300E, NACA2, OTOP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SKA2, APOH, GPR142, ZACN, ITGB4, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, AATK-AS1, LGALS3BP, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, MXRA7, TBC1D3P2, PLEKHM1P1, LOC440461, BAIAP2-AS1, MIR338, TRIM37, NPTX1, ACOX1, MRPS7, RNFT1, HN1, TUBD1, TACO1, AMZ2, MRPS23, PTRH2, PECAM1, SEPT4, SDK2, FAM20A, BCAS3, TMEM104, RNF43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MKS1, C17orf80, CCDC40, WIPI1, SMG8, MSX2P1, PRKAR1A, PRR11, PRKCA, ST6GALNAC1, TEX2, GPRC5C, MAP2K6, TEX14, PRPSAP1, CCDC47, PSMC5, PSMD12, CBX8, MIF4GD, INTS2, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, RAD51C, SCPEP1, SLC25A19, RPL38, RPS6KB1, SCN4A, UBE2O, HEATR6, SEC14L1, SRSF1, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, WFDC21P, SMURF2, ENGASE, MRPL38, TBC1D3P1-DHX40P1, LOC653653, SNHG20, SMARCD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SUMO2, SOX9, SRP68, SSTR2, SCARNA20, SCARNA16, SNORA50C, SNORD1A, SNORD1B, SNORD1C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, MIR636, TIMP2, TK1, ACTG1, MIR657, LOC729683, CA4, PRCD, MIR454, TRIM25, VEZF1, CACNG1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, DHX40, NUP85, MYO15B, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, QRICH2, USP32, CBX2, FAM104A, PPM1D, MGC16275, FBF1, CBX4, UNK, DNAH17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 RGS9, GALR2, SPHK1, SOCS3, CEP95, MTMR4, TRIM47, SLC16A6, SLC16A5, SYNGR2, STRADA, PRR29, TSPOAP1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, TBX4, AATK, CD79B, TMEM94, EIF4A3, MRC2, HELZ, MED13) 0.0991425956040785 528 0.0452010789562946 1.03215993257337 21718 0.356587243711113 3 3 0 -7.03004746919561 LTS-018 NA NA NA NA LTS-018 chr17 79479446 79495335 15890 * ACTG1 NA 0 NA 1.642 1 NA NA NA NA NA LTS-018 chr17 79495336 79987515 492180 * c(ALYREF, PPP1R27, SLC25A10, NOTUM, CENPX, LRRC45, MYADML2, NPB, FSCN2, GCGR, OXLD1, CCDC137, ARL16, MCRIP1, ARHGDIA, MAFG, P4HB, PDE6G, ANAPC11, SIRT7, NPLOC4, PYCR1, PCYT2, MRPL12, ASPSCR1, FAAP100, TSPAN10, HGS, MAFG-AS1) 0.0782995616911845 45 0.0361207570644511 1.23631467589128 1320 0.339165492370771 4 4 0 -6.76308492401847 LTS-018 chr17 79987516 79987925 410 * LRRC45 NA 0 NA 0.886 1 NA NA NA NA NA LTS-018 chr17 79987926 80363378 375453 * c(CSNK1D, LRRC45, FASN, UTS2R, CCDC57, GPS1, TEX19, DCXR, RAC3, RFNG, SECTM1, DUS1L, OGFOD3, SLC16A3, CD7) 0.0950363682880897 55 0.0414732480405177 1.0176123102524 1013 0.337374318592342 3 3 0 -6.74717943192203 LTS-018 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.962 1 NA NA NA NA NA LTS-018 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.128544761737276 3 0.0189032625050104 2.0075219359976 39 0.927235304031202 10 9 1 -6.73749947265736 LTS-018 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.927 1 NA NA NA NA NA LTS-018 chr17 80391535 81043039 651505 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.105672860136661 29 0.0224604194829427 1.00481729222834 873 0.267627345748913 3 3 0 -6.81910613100717 LTS-018 chr17 81043040 81083625 40586 * METRNL NA 0 NA 1.05261279819149 23 0.221885078683296 3 NA NA -5.76492755025127 LTS-018 chr18 116845 203081 86237 * c(ROCK1P1, USP14) 0.464 1 NA 0.80972903495921 101 0.19526988787038 2 2 0 -5.76477857466375 LTS-018 chr18 203082 3580513 3377432 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.421532817110383 35 0.111352208265998 0.762183568754042 1752 0.260143685689246 2 1 1 -6.79148020272094 LTS-018 chr18 3580514 8546022 4965509 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.417674852260756 44 0.106310755543294 0.857808724072099 1429 0.23140580004392 2 1 1 -7.02803115631134 LTS-018 chr18 8546023 15004281 6458259 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.447144352582493 87 0.0699932081327179 0.807271119740132 3369 0.898433506936352 2 1 1 -6.78841393509012 LTS-018 chr18 15004282 15006193 1912 * character(0) NA 0 NA 0.920335050819707 25 0.373723257683186 2 NA NA -5.76458158311803 LTS-018 chr18 18529727 18622539 92813 * ROCK1 0.484 1 NA 0.715413252214216 149 0.145120681966707 2 2 0 -5.79473460887781 LTS-018 chr18 18622540 23772380 5149841 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.410815930774613 38 0.130107202215246 0.805291699446913 2668 0.210497458154884 2 1 1 -6.74953717033983 LTS-018 chr18 23772381 29204476 5432096 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, KCTD1, AQP4, TAF4B, TTR, PCAT18, CHST9, B4GALT6) 0.436772373966392 32 0.0433313843647736 0.885515417971024 1399 0.233913281398513 2 1 1 -7.37386076750194 LTS-018 chr18 29204477 29204534 58 * B4GALT6 NA 0 NA 0.768 1 NA NA NA NA NA LTS-018 chr18 29204535 57026361 27821827 * c(ZSCAN30, SNORD58C, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, MIR5583-2, MIR5583-1, LINC-ROR, ACAA2, ZNF271P, MALT1, MAPRE2, POLI, HAUS1, ALPK2, LOXHD1, INO80C, STARD6, C18orf25, SLC25A52, C18orf54, TCEB3C, DCC, DTNA, ZBTB7C, SKA1, CFAP53, FECH, TRAPPC8, NEDD4L, WDR7, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, NA NA NA NA NA NA NA NA NA LTS-018 SNORD58B, SNORD58A, DYNAP, BOD1L2, LINC00907, SIGLEC15, GRP, ST8SIA5, RAX, CXXC1, CPLX4, CCDC178, OACYLP, LMAN1, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, NARS, RNF165, C18orf32, ATP5A1, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RAB27B, RIT2, RPL17, KC6, GAREM1, MIR924HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, ZNF24, FHOD3, CCDC68, ASXL3, SLC14A2, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, NOL4, MBD2, PSTPIP2, PIAS2, SEC11C, B4GALT6, TXNL1, LIPG, ONECUT2, CTIF) 0.423264632670195 218 0.122511516787835 0.821526760574954 10433 0.281727800850392 2 1 1 -6.9282225011836 LTS-018 NA NA NA NA LTS-018 chr18 57026362 57571227 544866 * c(CCBE1, LMAN1, PMAIP1) 0 1 NA 0.836315768518135 96 0.312267254379794 2 2 0 -5.7723787115805 LTS-018 chr18 57571228 58310748 739521 * c(MC4R, PMAIP1) 0.464 1 NA 0.848059404508161 94 0.254482570389196 2 2 0 -5.79125009507854 LTS-018 chr18 58310749 77926862 19616114 * c(PARD6G-AS1, LOC100131655, CDH7, LINC01541, LOC100505817, RBFADN, MIR5011, LINC01544, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, RNF152, LINC00305, ADNP2, PHLPP1, PIGN, KDSR, GALR1, RTTN, KCNG2, SALL3, CDH20, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, LOC339298, ATP9B, LINC01538, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, SERPINB2, SERPINB5, SERPINB8, SERPINB10, NA NA NA NA NA NA NA NA NA LTS-018 SERPINB13, TMX3, ZCCHC2, ZNF407, CNDP2, KIAA1468, BCL2, SERPINB3, SERPINB4, LOC643542, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, CTDP1, DSEL, SOCS6, VPS4B, ZNF516) 0.286002217131197 109 0.0901234617744759 0.572447659639464 5765 0.173494277348986 1 1 0 -10.4001921593953 LTS-018 NA NA NA NA LTS-018 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.474498699346201 17 0.0846161314755192 1 NA NA -5.79109445004286 LTS-018 chr19 107416 327182 219767 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.359 1 NA 1.09216566951116 83 0.205599714088194 3 3 0 -5.76447448718881 LTS-018 chr19 327183 746459 419277 * c(FSTL3, C2CD4C, SHC2, FGF22, ODF3L2, GZMM, PRSS57, PALM, THEG, POLRMT, MIER2, RNF126, HCN2, BSG, MADCAM1, TPGS1, CDC34) 0.36836335419627 39 0.0873916526029195 1.04499035931434 701 0.294970812861523 3 2 1 -6.73899919429293 LTS-018 chr19 746460 1925992 1179533 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, GAMT, DAZAP1, GPX4, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, PALM, ATP5D, MBD3, POLR2E, PCSK4, C19orf24, PRTN3, AZU1, PTBP1, WDR18, REXO1, RPS15, STK11, TCF3, PLPPR3, ABHD17A, KLF16, KISS1R, MUM1, MIDN, R3HDM4, NA NA NA NA NA NA NA NA NA LTS-018 TMEM259, REEP6) 0.434176301116046 120 0.0798391761456683 0.771406497153544 3095 0.204473255126979 2 1 1 -6.75668314596463 LTS-018 NA NA NA NA LTS-018 chr19 1925993 1952766 26774 * c(SCAMP4, CSNK1G2, CSNK1G2-AS1) NA 0 NA 0.403 1 NA NA NA NA NA LTS-018 chr19 1952767 1986520 33754 * c(CSNK1G2, CSNK1G2-AS1, BTBD2) 0.191328454961523 3 0.0340440890610984 0.511822338208441 75 0.126793061168032 1 1 0 -6.96090925127842 LTS-018 chr19 1986521 1986561 41 * BTBD2 NA 0 NA 0.878 1 NA NA NA NA NA LTS-018 chr19 1986562 2046310 59749 * c(MKNK2, BTBD2) 0.321448828766413 3 0.190575444378335 0.800826139754261 93 0.181215734940417 3 2 1 -6.86325695166348 LTS-018 chr19 2046311 2073466 27156 * c(MOB3A, MKNK2) 0.489 1 NA 0.698907821305676 17 0.121642013349684 2 2 0 -5.78316196897492 LTS-018 chr19 2073467 8962315 6888849 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MIR1227, CHAF1A, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4999, EBI3, PLIN3, CLEC4M, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, IZUMO4, ZNF554, EVI5L, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, ZNF358, TICAM1, ZNRF4, ZNF558, DIRAS1, ZNF555, DAPK3, NA NA NA NA NA NA NA NA NA LTS-018 PRR22, AES, ANKRD24, EEF2, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, FUT3, FUT5, FUT6, KANK3, TINCR, CATSPERD, RPL36, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, OR2Z1, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, UHRF1, GTF2F1, SLC39A3, CD209, ADGRE4P, CLEC4G, TMPRSS9, INSR, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, ANGPTL4, MARCH2, CD320, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, PLEKHJ1, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STXBP2, TBXA2R, MIR637, THOP1, TLE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, SF3A2, ADAMTS10, CLPP, CAPS, DOHH, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, MBD3L1, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, DPP9, RAB11B, CRB3, PEX11G, TRIP10, LONP1, MUC16, APBA3, SAFB2, CD70) 0.443818433361833 351 0.0596948055421057 0.797050926367869 10918 0.243900646297653 2 1 1 -6.78634759631904 LTS-018 NA NA NA NA LTS-018 chr19 8962316 8976713 14398 * MUC16 0.391 1 NA 0.869498176059156 39 0.241642783500385 2 2 0 -5.76554760872269 LTS-018 chr19 8976714 9024988 48275 * MUC16 0.281334143013164 12 0.188362239669562 0.825214738713646 260 0.371702780370227 4 3 1 -6.78862462726234 LTS-018 chr19 9024989 9046876 21888 * MUC16 0.497 1 NA 0.812235056017866 71 0.320987685379034 2 2 0 -5.76445894003208 LTS-018 chr19 9046877 9346762 299886 * c(OR7D4, OR7G1, OR1M1, OR7D2, OR7G2, OR7G3, ZNF317, MUC16) 0.426848782628498 64 0.101563721299128 0.877874149397103 999 0.613487448615804 2 1 1 -6.73759769532569 LTS-018 chr19 9346763 9434930 88168 * c(ZNF559-ZNF177, OR7E24, ZNF699, ZNF559) 0.498 1 NA 0.846883542375677 69 0.172517258857137 2 2 0 -5.77109083137133 LTS-018 chr19 9434931 11708361 2273431 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, PIN1, S1PR5, ACP5, ZNF562, NA NA NA NA NA NA NA NA NA LTS-018 FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.459215111634747 70 0.03406457453272 0.799281142529256 4538 0.189821544773495 2 1 1 -7.25717742966907 LTS-018 NA NA NA NA LTS-018 chr19 11708362 11727495 19134 * ZNF627 0 1 NA 0.919377304311889 11 0.890516642690686 2 2 0 -5.76470811145815 LTS-018 chr19 11727496 11796069 68574 * c(ZNF627, ZNF833P) NA 0 NA 0.709938068465059 24 0.075853011461814 2 NA NA -5.85758997037267 LTS-018 chr19 11796070 12225431 429362 * c(ZNF441, ZNF491, ZNF440, ZNF433, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF823, ZNF878, ZNF69, ZNF700, ZNF439) 0.223537580626883 3 0.18124844826922 0.561666026679782 791 0.214821988302994 1 1 0 -6.79588377534265 LTS-018 chr19 12225432 12624675 399244 * c(ZNF625-ZNF20, ZNF443, ZNF563, ZNF709, ZNF788, ZNF44, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.439229101234037 5 0.106074030752112 0.791027307933628 620 0.156189064419984 2 1 1 -6.74288433169785 LTS-018 chr19 12624676 12636178 11503 * ZNF709 NA 0 NA 1.491 1 NA NA NA NA NA LTS-018 chr19 12636179 13868672 1232494 * c(RNASEH2A, KLF1, NACC1, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, HOOK2, TNPO2, JUNB, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, TRMT1, ZNF490, RAD23A, PRDX2, CACNA1A, C19orf43, CALR, CCDC130, RTBDN, FBXW9, WDR83, STX10, GADD45GIP1, IER2) 0.15735548536983 23 0.0585739288279344 2.36984549623706 2018 0.552233840328336 8 7 1 -6.74481913781654 LTS-018 chr19 13868673 13869645 973 * CCDC130 NA 0 NA 1.704 1 NA NA NA NA NA LTS-018 chr19 13869646 14044903 175258 * c(LOC284454, C19orf53, NANOS3, MIR181C, CC2D1A, MIR181D, ZSWIM4, C19orf57, PODNL1, CCDC130, MRI1) 0.252751073591457 12 0.036226559819608 1.68299910002844 431 0.389637266546727 5 4 1 -6.82129149503294 LTS-018 chr19 14044904 14044984 81 * PODNL1 NA 0 NA 1.214 1 NA NA NA NA NA LTS-018 chr19 14044985 15271648 1226664 * c(LOC100507373, DDX39A, GIPC1, ILVBL, MISP3, RLN3, OR1I1, CCDC105, ADGRL1, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, DNAJB1, PALM3, CLEC17A, OR7A10, NDUFB7, NOTCH3, PRKACA, ASF1B, PKN1, PTGER1, RFX1, C19orf67, SLC1A6, MIR639, PODNL1, ZNF333, ADGRE3, SYDE1, SAMD1, DCAF15, IL27RA, TECR, ADGRE5) 0.28629220030253 34 0.0752435676596564 1.41016628485099 1915 0.348084785182359 4 3 1 -6.73704177290846 LTS-018 chr19 15271649 15350594 78946 * c(BRD4, NOTCH3, EPHX3) 0.202859190522978 3 0.032316146634977 1.77164948012587 267 0.400278627016067 6 5 1 -6.73617138732573 LTS-018 chr19 15350595 15471856 121262 * c(AKAP8, BRD4) 0.155 1 NA 2.09919605529682 113 0.4367988922627 6 6 0 -5.76622129485603 LTS-018 chr19 15471857 17100552 1628696 * c(MIR1470, AKAP8, KLF2, CHERP, CYP4F8, PGLYRP2, CIB3, CALR3, CYP4F22, LINC00661, OR10H4, LINC00905, SIN3B, FAM32A, OR10H3, OR10H2, OR10H1, AKAP8L, CPAMD8, OR10H5, NWD1, CYP4F24P, CYP4F3, RAB8A, CYP4F11, EPS15L1, WIZ, RASAL3, UCA1, CYP4F12, TPM4, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, CYP4F2, AP1M1, F2RL3, MED26) 0.188273419453751 59 0.0409543444394229 1.89383964111982 2283 0.556969529542657 6 5 1 -6.81701298772681 LTS-018 chr19 17100553 17107910 7358 * CPAMD8 0.256 1 NA 1.75295779489226 9 0.394333861650815 5 5 0 -5.76447908654668 LTS-018 chr19 17107911 17291856 183946 * c(CPAMD8, MYO9B, HAUS8) 0.219528515424456 8 0.0403871885627113 1.85229591389935 191 0.427789538213869 6 5 1 -6.82958241328555 LTS-018 chr19 17291857 17294532 2676 * MYO9B NA 0 NA 1.723 1 NA NA NA NA NA LTS-018 chr19 17294533 17671375 376843 * c(TMEM221, NXNL1, ANKLE1, FAM129C, NR2F6, PGLS, BABAM1, SLC27A1, MYO9B, USE1, ANO8, MRPL34, BST2, DDA1, ABHD8, OCEL1, COLGALT1, PLVAP, USHBP1, GTPBP3, MVB12A) 0.218759091898371 34 0.0719051910938206 1.67075852817821 1086 0.685191702918387 6 5 1 -6.77262516406504 LTS-018 chr19 17671376 17678161 6786 * COLGALT1 NA 0 NA 1.174 1 NA NA NA NA NA LTS-018 chr19 17678162 19825258 2147097 * c(MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, CCDC124, LRRC25, NR2C2AP, COMP, NCAN, CILP2, SSBP4, UNC13A, MAST3, FCHO1, CRTC1, MAU2, FKBP8, TMEM59L, LSM4, GDF1, SNORA68, ARRDC2, SLC25A42, IL12RB1, INSL3, JAK3, JUND, YJEFN3, KCNN1, HAPLN4, BORCS8-MEF2B, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, ATP13A1, SUGP1, RAB3A, UPF1, NA NA NA NA NA NA NA NA NA LTS-018 RPL18A, SLC5A5, LOC729966, BORCS8, UBA52, ZNF14, KXD1, COLGALT1, PBX4, KIAA1683, ELL, TSSK6, MPV17L2, RFXANK, LPAR2, CRLF1, ARMC6, ZNF101, HOMER3, GDF15) 0.279859528376225 82 0.0575266744878167 1.38872439342158 4415 0.329380752344213 4 3 1 -6.74880282320994 LTS-018 NA NA NA NA LTS-018 chr19 19825259 20012012 186754 * c(LINC00663, ZNF506, ZNF253, ZNF14, ZNF93) NA 0 NA 1.27275444343105 97 0.245158752217129 4 NA NA -5.77614182215567 LTS-018 chr19 20012013 20044014 32002 * ZNF93 NA 0 NA 0.751 1 NA NA NA NA NA LTS-018 chr19 20044015 20133846 89832 * c(ZNF93, ZNF682) 0.476 1 NA 0.729298123718131 53 0.159108421651239 2 2 0 -5.78090431747334 LTS-018 chr19 20133847 24115138 3981292 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF486, ZNF682) 0.454926825567264 35 0.0274245182579507 0.783933538084759 1225 0.339525343856658 2 1 1 -7.34288110301849 LTS-018 chr19 24115139 24345121 229983 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.83899654193891 101 0.200794178646239 2 NA NA -5.77364506814923 LTS-018 chr19 28247625 29704002 1456378 * c(LINC01532, LINC00906, LINC00662, UQCRFS1) 0.061 1 NA 2.04231712909741 23 0.561842079003638 6 6 0 -5.76916414225859 LTS-018 chr19 29704003 30414738 710736 * c(POP4, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1) 0.162779068637788 8 0.0539296830538222 2.11093644361664 235 0.393827648324535 7 6 1 -6.78623272225499 LTS-018 chr19 30414739 30433465 18727 * URI1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-018 chr19 30433466 31025892 592427 * c(URI1, ZNF536) 0.222 1 NA 1.52871165644556 117 0.3250121340318 5 5 0 -5.79011859147373 LTS-018 chr19 31025893 33457257 2431365 * c(THEG5, SLC7A9, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, TSHZ3, ANKRD27, CEP89, PDCD5, TDRD12, NA, ZNF536) 0.345688890617803 19 0.0556779587244297 1.11192879538388 840 0.349015563641833 3 2 1 -6.80388597420832 LTS-018 chr19 33457258 34717459 1260202 * c(CEBPA, CEBPG, WDR88, LSM14A, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, CEP89, RHPN2, FAAP24) 0.232753769153435 22 0.0314388019555178 1.68957528133074 697 0.451509349782495 5 4 1 -6.75541017481936 LTS-018 chr19 34717460 34718112 653 * LSM14A NA 0 NA 1.247 1 NA NA NA NA NA LTS-018 chr19 34718113 35233572 515460 * c(SCGB2B3P, UBA2, WTIP, LSM14A, GPI, SCGB2B2, ZNF181, ZNF302, SCGB1B2P, PDCD2L, KIAA0355) 0.268853636389416 12 0.110667670678177 1.39654001638913 539 0.333692562734621 4 3 1 -6.75331267481213 LTS-018 chr19 35233573 35233662 90 * ZNF181 NA 0 NA 1.653 1 NA NA NA NA NA LTS-018 chr19 35233663 36019084 785422 * c(HPN-AS1, LINC01531, LINC00904, MIR5196, ZNF792, ZNF599, FAM187B, LGI4, FFAR1, FFAR3, FFAR2, HPN, ZNF181, SBSN, KRTDAP, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, ZNF30, DMKN, CD22) 0.258717115902296 41 0.0777193591101201 1.6657421445638 1306 0.382986398819564 5 4 1 -6.77235171792242 LTS-018 chr19 36019085 36219866 200782 * c(TMEM147-AS1, UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, GAPDHS, ZBTB32, SBSN, ATP4A, RBM42, KMT2B) 0.292042950959282 13 0.0634568296621351 1.38812821053538 609 0.300141238547576 4 3 1 -6.73449788315613 LTS-018 chr19 36219867 36342212 122346 * c(ARHGAP33, HSPB6, PROSER3, U2AF1L4, NPHS1, PSENEN, LIN37, PRODH2, IGFLR1, KMT2B) 0.259091189796694 17 0.0429967509032403 1.62691871974834 621 0.358238821817183 5 4 1 -6.86466361608068 LTS-018 chr19 36342213 36342617 405 * NPHS1 NA 0 NA 1.60652450715646 10 0.171776340370585 5 NA NA -5.76442196366425 LTS-018 chr19 36342618 36387881 45264 * c(APLP1, NPHS1, KIRREL2, NFKBID) 0.201 1 NA 1.86968867281408 195 0.347782251904298 6 6 0 -5.76490304231697 LTS-018 chr19 36387882 37488705 1100824 * c(LOC100134317, LINC00665, HCST, TBCB, COX7A1, ZNF565, ZNF567, SYNE4, THAP8, ZNF345, CLIP3, WDR62, ZFP82, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, POLR2I, ZFP14, ZNF529, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, LRFN3, CAPNS1, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461) 0.204435116086696 57 0.0709732070241173 1.87553047280742 1734 0.581545904841782 6 5 1 -6.73690071538703 LTS-018 chr19 37488706 37579887 91182 * c(ZNF420, ZNF568) NA 0 NA 1.094 1 NA NA NA NA NA LTS-018 chr19 37579888 37734560 154673 * c(ZNF420, ZNF383, ZNF585A, ZNF585B) 0.275486024692224 10 0.0377718295970835 1.39723173332108 259 0.326115723411826 4 3 1 -6.80883838236753 LTS-018 chr19 37734561 37825532 90972 * c(ZNF383, LOC284412, HKR1) NA 0 NA 2.471 1 NA NA NA NA NA LTS-018 chr19 37825533 38231118 405586 * c(ZNF571-AS1, ZNF573, ZNF569, ZNF570, ZNF781, ZNF540, ZFP30, HKR1, ZNF793, ZNF571, ZNF527, ZNF607) 0.315476079829107 2 0.0912167747730646 1.69459611553765 627 0.327712378651635 6 4 2 -6.86673215432819 LTS-018 chr19 38231119 38231440 322 * ZNF573 NA 0 NA 2.229 1 NA NA NA NA NA LTS-018 chr19 38231441 40030703 1799263 * c(MIR4530, LOC100631378, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, ZNF573, EID2B, RINL, FBXO27, FAM98C, CAPN12, EID2, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, HNRNPL, NCCRP1, SYCN, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, PAF1, SARS2, SAMD4B, MED29, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, LOC644554, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, NA NA NA NA NA NA NA NA NA LTS-018 WDR87, YIF1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.206234354369823 104 0.0445147337382904 1.97014933321085 3597 0.638339061231414 6 5 1 -6.73560921455993 LTS-018 NA NA NA NA LTS-018 chr19 40030704 40030751 48 * EID2 NA 0 NA 1.49 1 NA NA NA NA NA LTS-018 chr19 40030752 40384193 353442 * c(LOC100129935, CLC, LGALS16, EID2, FBL, LGALS13, LEUTX, LGALS17A, LGALS14, FCGBP, DYRK1B) 0.281515407545128 7 0.0752323385380566 1.74790583969263 306 0.614513456085605 4 3 1 -6.77053175254795 LTS-018 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.003 1 NA NA NA NA NA LTS-018 chr19 40389650 40399881 10232 * FCGBP NA 0 NA 0.210954319680721 39 0.200125304876275 0 NA NA -5.76446691031283 LTS-018 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 2.865 1 NA NA NA NA NA LTS-018 chr19 40405935 40520114 114180 * c(ZNF546, PSMC4, FCGBP) 0.241914718616891 2 0.0247487373415292 1.57460014686018 202 0.419220776947707 5 4 1 -6.74408726723849 LTS-018 chr19 40520115 40736910 216796 * c(TTC9B, ZNF780B, AKT2, ZNF780A, ZNF546, MAP3K10, CNTD2) 0 1 NA 1.0139702020009 476 0.233119992943823 3 3 0 -5.77603134137872 LTS-018 chr19 40736911 40884160 147250 * c(C19orf47, AKT2, PLD3, MIR641) 0.416 1 NA 1.09372430473377 264 0.169361795842173 3 3 0 -5.76451984365477 LTS-018 chr19 40884161 40929515 45355 * c(HIPK4, PLD3, SERTAD1, PRX) 0.377476518996406 5 0.0501398045468867 1.09508656432931 174 0.165281000266917 3 2 1 -6.7755629202706 LTS-018 chr19 40929516 40947357 17842 * c(SERTAD3, SERTAD1) NA 0 NA 1.816 1 NA NA NA NA NA LTS-018 chr19 40947358 42848764 1901407 * c(ERICH4, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, ZNF526, LYPD4, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, ERF, CYP2G1P, CIC, C19orf54, PRR19, TMEM145, GRIK5, GSK3A, CYP2S1, SERTAD3, B3GNT8, CEACAM6, ATP1A3, PAFAH1B3, RAB4B, POU2F2, ATP5SL, AXL, EXOSC5, SPTBN4, BCKDHA, RPS19, DMRTC2, TMEM91, BLVRB, ZNF574, NA NA NA NA NA NA NA NA NA LTS-018 SNRPA, TGFB1, COQ8B, ITPKC, B9D2, MIA, LTBP4, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, CD79A) 0.277275615963776 69 0.0701268762485434 1.38870145405853 3461 0.373702740762967 4 3 1 -6.75019821565813 LTS-018 NA NA NA NA LTS-018 chr19 42848765 42893766 45002 * c(MEGF8, CNFN) NA 0 NA 1.38597470168513 235 0.265370211368291 4 NA NA -5.76442310458299 LTS-018 chr19 42893767 42905951 12185 * c(LIPE-AS1, LIPE, CNFN) NA 0 NA 0.697 1 NA NA NA NA NA LTS-018 chr19 42905952 42912229 6278 * c(LIPE-AS1, LIPE) 0.481 1 NA 0.799922775686636 51 0.151357359239908 2 2 0 -5.76441316562664 LTS-018 chr19 42912230 51321813 8409584 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, ZNF234, CGB3, PPP1R13L, CD3EAP, RUVBL2, CEACAM8, NA NA NA NA NA NA NA NA NA LTS-018 KDELR1, CLASRP, KPTN, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, CADM4, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, PRKD2, ZNF473, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, LYPD3, BBC3, DKKL1, C5AR2, DHDH, GPR4, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, GPR32, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ZNF284, C19orf81, APOC2, APOE, ZNF233, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIPE, SIGLEC16, LOC400710, BCAM, MIR150, PSG8, MIR330, IGFL4, MYBPC2, NOVA2, NPAS1, NTF4, NUCB1, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, SMG9, IRGC, CABP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PRRG2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, MEIS3, CEACAM19, SLC17A7, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, RPS11, RRAS, RTN2, CLEC11A, CEACAM1, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 C5AR1, TULP2, CCDC61, NR1H2, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, ZNF235, CCDC114, LOC93429, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, NAPSA, CD37, DHX34) 0.443465784719382 333 0.0726709825877185 0.806843893579866 14448 0.200023906937269 2 1 1 -6.78862841776317 LTS-018 NA NA NA NA LTS-018 chr19 51321814 51323473 1660 * c(MGC45922, KLK1) 0.5 1 NA 0.950855699261773 15 0.0945562568753952 3 3 0 -5.76640893519689 LTS-018 chr19 51323474 52133652 810179 * c(LOC100129083, KLK11, KLK8, CLDND2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, KLK9, SIGLEC17P, SIGLECL1, KLK3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, NKG7, KLK15, KLK7, KLK6, KLK10, KLKP1, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, CD33, SIGLEC6, KLK4) 0.451019780235047 74 0.0474148040499499 0.797749276087111 1498 0.214309192223091 2 1 1 -6.89627212065826 LTS-018 chr19 52133653 52133657 5 * SIGLEC5 NA 0 NA 1.165 1 NA NA NA NA NA LTS-018 chr19 52133658 52196631 62974 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.428 1 NA 1.27891620199903 42 0.462118396421594 4 4 0 -5.76539393888307 LTS-018 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.826 1 NA NA NA NA NA LTS-018 chr19 52196825 55281352 3084528 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR4752, MIR371B, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, BIRC8, LENG8, KIR3DL3, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, CDC42EP5, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, LILRA4, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, LILRA5, NA NA NA NA NA NA NA NA NA LTS-018 KIR2DL1, KIR2DL3, KIR2DS4, ZNF808, ZNF761, LAIR1, LAIR2, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, PRKCG, TTYH1, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRP2, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, KIR3DX1, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LENG9, ZNF432) 0.439161319699738 154 0.0818700312703129 0.797172451380056 5243 0.312138265066436 2 1 1 -6.7486273843237 LTS-018 NA NA NA NA LTS-018 chr19 55281353 55284882 3530 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.294 1 NA 0.705776794529205 5 0.776656938422622 2 2 0 -5.76446146259633 LTS-018 chr19 55284883 55512347 227465 * c(RNU6-64P, NLRP7, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, NLRP2, NCR1) 0.33796514765778 70 0.116643578608691 0.891910543681813 516 0.588998262593235 3 2 1 -6.77835718628095 LTS-018 chr19 55512348 55558922 46575 * c(RDH13, GP6, NLRP2) 0.476 1 NA 0.798287896119256 81 0.144777971774407 2 2 0 -5.76441687144129 LTS-018 chr19 55558923 56156447 597525 * c(SBK3, ZNF865, RDH13, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, DNAAF3, IL11, TMEM238, ZNF580, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.444772818865469 41 0.0466016198818212 0.798017600015717 1810 0.194551561497896 2 1 1 -6.8293886466806 LTS-018 chr19 56156448 56249672 93225 * c(U2AF2, CCDC106, EPN1, NLRP9, ZNF581) 0.47 1 NA 0.85129151246452 247 0.200994688856416 2 2 0 -5.77053284844177 LTS-018 chr19 56249673 59082605 2832933 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, NLRP9, RFPL4A, NA NA NA NA NA NA NA NA NA LTS-018 ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.434552235948696 126 0.0690101276211377 0.812573364618198 4854 0.527095903958187 2 1 1 -6.74478099691616 LTS-018 NA NA NA NA LTS-018 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.820664856874063 9 0.0684082922199089 2 NA NA -5.76456996085757 LTS-018 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.485 1 NA 1.32360954259846 39 0.285159561839511 4 4 0 -5.76524413613385 LTS-018 chr20 138126 1559302 1421177 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.454533716364955 89 0.0758407068743644 1.35804752535019 1944 0.555686886354584 4 2 2 -6.81765462979389 LTS-018 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.086 1 NA NA NA NA NA LTS-018 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.07788820027086 39 0.0258764061272441 0 NA NA -12.0639676450353 LTS-018 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.558 1 NA NA NA NA NA LTS-018 chr20 1600391 25666737 24066347 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, CST1, CST2, NA NA NA NA NA NA NA NA NA LTS-018 CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SNX5, GNRH2, LOC284788, LOC284798, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, TGM3, THBD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 LINC01433, ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.44871066882665 311 0.0809724015980632 1.40773654168263 12517 0.550538819416936 4 2 2 -6.80179740702867 LTS-018 NA NA NA NA LTS-018 chr20 25666738 25753734 86997 * c(ZNF337, FAM182B) 0.242 1 NA 1.47850859725102 25 0.395575437390476 4 4 0 -5.7660651014964 LTS-018 chr20 25753735 25900230 146496 * FAM182B 0.307991196122941 8 0.0869351153775866 1.6440771179908 32 0.7251851793541 7 5 2 -6.74974927622426 LTS-018 chr20 25900231 26188981 288751 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.351101745982743 17 0.110654603051435 0.873627749182508 55 0.795387440055461 3 2 1 -6.75435395732477 LTS-018 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.686940494687797 5 0.433765259097591 2 NA NA -5.76441278799957 LTS-018 chr20 29625845 29625876 32 * FRG1BP 0.317 1 NA 1.847 1 NA NA NA NA NA LTS-018 chr20 29625877 29652166 26290 * c(MLLT10P1, FRG1BP) 0.274878766557615 19 0.128626095776168 1.35134837858975 46 0.942839387503523 4 3 1 -6.74024126391245 LTS-018 chr20 29652167 29960787 308621 * c(DEFB118, DEFB115, DEFB116, FRG1BP) 0.422 1 NA 1.37673373408487 41 0.602860719869006 4 4 0 -5.7644105235539 LTS-018 chr20 29960788 32319880 2359093 * c(MCTS2P, MIR3193, HM13-AS1, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, MAPRE1, TPX2, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, BCL2L1, NECAB3, SNTA1, BPIFB2, HM13, PDRG1, COX4I2, ZNF341, NA NA NA NA NA NA NA NA NA LTS-018 MYLK2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.450136141902757 82 0.069302188170036 1.39769742763547 3577 0.343937359613211 4 2 2 -6.80765853271821 LTS-018 NA NA NA NA LTS-018 chr20 32319881 32328661 8781 * ZNF341 NA 0 NA 2.171 1 NA NA NA NA NA LTS-018 chr20 32328662 32686488 357827 * c(MIR4755, CHMP4B, RALY, ZNF341, EIF2S2) 0.421168664517117 2 0.0381837661840736 1.6809837322622 233 0.324339026836125 6 3 3 -6.78997423137139 LTS-018 chr20 32686489 32691358 4870 * EIF2S2 NA 0 NA 1.468 1 NA NA NA NA NA LTS-018 chr20 32691359 47361725 14670367 * c(ADA, ACOT8, ZNF663P, LOC100131496, LOC100287792, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, MIR499B, LINC00489, SGK2, RBM12, MMP24-AS1, MYL9, WFDC2, PROCR, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, CEP250, TP53RK, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, PIGU, HMGB3P1, FAM83C, SLC32A1, WFDC3, MROH8, SOGA1, TLDC2, RIMS4, ROMO1, NEURL2, NA NA NA NA NA NA NA NA NA LTS-018 ZSWIM3, WFDC10A, WFDC6, C20orf173, CNBD2, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, AHCY, EPB41L1, EYA2, DLGAP4, ZHX3, NCOA6, ZMYND8, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, TRPC4AP, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, WFDC10B, LINC00494, GSS, HNF4A, LOC339568, ARHGAP40, EIF6, KCNS1, SNHG17, SPINT4, LBP, MMP9, ASIP, MYBL2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, OSER1, PIGT, ERGIC3, PI3, PLCG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PLTP, CTSA, UQCC1, ZNF334, EDEM2, DBNDD2, ACSS2, SULF2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, NDRG3, MIR499A, SLC12A5, PREX1, MYH7B, NCOA5, TP53INP2, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, SLPI, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, MIR644A, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, MKRN7P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, SLC2A10, FAM83D, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, TOX2, KIAA1755, MATN4, WISP2, EIF2S2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, CD40, RBM39, TTI1, MAFB) 0.438550495290463 298 0.0996431746453642 1.37758850428627 14308 0.377827439668745 4 2 2 -6.7426133419473 LTS-018 NA NA NA NA LTS-018 chr20 47361726 47641832 280107 * c(ARFGEF2, PREX1) 0 1 NA 1.37116415879983 193 0.405422382105809 4 4 0 -5.76443495959955 LTS-018 chr20 47641833 48257149 615317 * c(SNORD12B, ARFGEF2, CSE1L, SNORD12C, KCNB1, ZFAS1, DDX27, ZNFX1, PTGIS, STAU1, SNORD12, B4GALT5) 0.327789210153433 9 0.179168217047556 1.34644649199591 987 0.360349459466681 4 3 1 -6.76256580785748 LTS-018 chr20 48257150 48259034 1885 * B4GALT5 0.487 1 NA 1.13377315928613 3 0.173500240153532 3 3 0 -5.76447615682007 LTS-018 chr20 48259035 57833518 9574484 * c(MIR298, MIR4325, MIR3194, MTRNR2L3, SLMO2-ATP5E, MIR4756, MIR4532, MIR5095, ATP9A, TRERNA1, CEBPB, FAM210B, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, FAM65C, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, FAM209A, SLC9A8, ADNP, SPO11, MOCS3, GNAS, LINC01270, KCNG1, TMEM189, TMEM189-UBE2V1, FAM209B, SUMO1P1, MIR296, MC3R, NFATC2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP4R1L, RBM38, NA NA NA NA NA NA NA NA NA LTS-018 BCAS4, ZFP64, DOK5, RNF114, PMEPA1, CASS4, SALL4, RAB22A, PTPN1, BMP7, SNAI1, AURKA, MIR645, TFAP2C, UBE2V1, ZNF217, NPEPL1, TUBB1, ZBP1, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB, B4GALT5, SPATA2) 0.456856802007278 126 0.0346443417125858 1.37664136213647 5468 0.342866233519582 4 2 2 -7.17620228919632 LTS-018 NA NA NA NA LTS-018 chr20 57833519 57833613 95 * ZNF831 0 1 NA 2.36649183273085 3 2.7020177645604 7 7 0 -5.764410154301 LTS-018 chr20 57833614 58576449 742836 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3, PPP1R3D, CDH26, FAM217B) 0.359593336939376 9 0.197995580758763 1.35644669959627 619 0.388147110843415 4 2 2 -6.80040658356377 LTS-018 chr20 58576450 58589068 12619 * CDH26 0.403 1 NA 1.32356308867625 41 0.414579359257008 4 4 0 -5.76448153016748 LTS-018 chr20 58589069 62905721 4316653 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, MIR4533, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, NA NA NA NA NA NA NA NA NA LTS-018 C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PCMTD2, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.45349655226038 187 0.0582722193150563 1.39330842465185 5783 0.358555126629007 4 2 2 -6.86667947459852 LTS-018 NA NA NA NA LTS-018 chr20 62905722 62959313 53592 * c(LINC00266-1, PCMTD2) NA 0 NA 1.37403572554829 51 0.56993890969499 4 NA NA -5.76441093042384 LTS-018 chr21 9825764 9825769 6 * character(0) 0.293 1 NA 0.299 1 NA NA NA NA NA LTS-018 chr21 9825770 11098723 1272954 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.330085144199664 40 0.0952230310430499 0.977806514537608 180 0.699353395493087 3 2 1 -6.82609125961009 LTS-018 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 1.25732217261187 3 0.0398371685740841 4 NA NA -5.76454971980345 LTS-018 chr21 14745307 14756794 11488 * character(0) 0.417 1 NA 1.00028813547906 9 0.523255939075495 3 3 0 -5.76458493610154 LTS-018 chr21 14756795 28326276 13569482 * c(MIR3156-3, LINC01549, RNU6-67P, SAMSN1-AS1, BTG3, ADAMTS5, MIR155HG, CYYR1, CHODL, LIPI, ABCC13, CXADR, C21orf91-OT1, GABPA, D21S2088E, LINC00515, USP25, POTED, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, ANKRD20A11P, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, RBM11, LINC00158, CHODL-AS1, NA, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, SAMSN1, HSPA13, NRIP1, ADAMTS1) 0.412351946772525 87 0.0870908112790831 1.10097260418947 2458 0.348764620141371 3 2 1 -6.92242712682216 LTS-018 chr21 28326277 30246145 1919869 * c(MIR4759, ADAMTS5, LINC00161, LINC00314, N6AMT1, LINC00113) 0 1 NA 1.13501340768505 69 0.494856749446032 3 3 0 -5.77310483025517 LTS-018 chr21 30246146 31692605 1446460 * c(KRTAP25-1, GRIK1-AS2, RWDD2B, USP16, CCT8, LINC00189, LTN1, CLDN17, LINC00307, GRIK1, N6AMT1, KRTAP26-1, MAP3K7CL, BACH1, GRIK1-AS1, KRTAP24-1, CLDN8) 0.247123092234248 9 0.210607322865195 1.0517903232436 1015 0.346298626186215 3 2 1 -6.92053742290227 LTS-018 chr21 31692606 31744310 51705 * c(KRTAP13-2, KRTAP23-1, KRTAP26-1, KRTAP27-1) 0.339 1 NA 1.06553332175533 41 0.220844686623328 3 3 0 -5.76466825423054 LTS-018 chr21 31744311 44473867 12729557 * c(LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, MIR4327, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, WDR4, LINC00310, B3GALT5-AS1, OLIG1, KRTAP13-1, TCP10L, LCA5L, IGSF5, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, KRTAP15-1, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, NA NA NA NA NA NA NA NA NA LTS-018 KRTAP13-4, LINC00323, DONSON, HUNK, HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, PRDM15, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TMPRSS2, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, RSPH1, UMODL1, PAXBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.397804249204872 253 0.0886561608852699 1.08557145725869 10159 0.800231822169714 3 2 1 -6.81860613095448 LTS-018 NA NA NA NA LTS-018 chr21 44473868 44473980 113 * CBS 0.429 1 NA 0.829951872073945 5 0.281174678803053 2 2 0 -5.76441157371197 LTS-018 chr21 44473981 48080896 3606916 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, RRP1B, DIP2A, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, NA NA NA NA NA NA NA NA NA LTS-018 KRTAP10-12, LSS, PCNT, PFKL, PCBP3, C21orf58, YBEY, TSPEAR, AGPAT3, PWP2, S100B, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP) 0.398912678933917 174 0.0633578814994352 1.07055308321431 5521 0.253599637223979 3 2 1 -6.91705420307208 LTS-018 NA NA NA NA LTS-018 chr21 48080897 48084993 4097 * PRMT2 NA 0 NA 0.96772693401485 29 0.256867353780942 3 NA NA -5.76491497690113 LTS-018 chr22 16157787 16157883 97 * character(0) 0.279 1 NA 0.495 1 NA NA NA NA NA LTS-018 chr22 16157884 20305282 4147399 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-018 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.135744649586372 117 0.0617629484700458 0.820617251655548 4468 0.256076131154697 2 2 0 -6.76668419230968 LTS-018 NA NA NA NA LTS-018 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.897 1 NA NA NA NA NA LTS-018 chr22 20307254 20398710 91457 * c(TMEM191B, PI4KAP1, NA, DGCR6L) 0.264939800062912 2 0.0551543289325507 0.405987081608958 39 0.248073723315731 1 1 0 -7.27077010917277 LTS-018 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.919 1 NA NA NA NA NA LTS-018 chr22 20717835 24340931 3623097 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, NA NA NA NA NA NA NA NA NA LTS-018 SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.148428570588164 110 0.0592905203623426 0.813935820575375 4336 0.368922534460605 2 2 0 -6.77064647411675 LTS-018 NA NA NA NA LTS-018 chr22 24340932 24340940 9 * GSTTP1 0.121 1 NA 3.215 1 NA NA NA NA NA LTS-018 chr22 24340941 24384316 43376 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.38124345506932 59 0.249738231159876 4 NA NA -5.76441253141801 LTS-018 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.728 1 NA NA NA NA NA LTS-018 chr22 24400149 45768128 21367980 * c(LOC100128531, LOC100130899, NDUFA6-AS1, MIR1249, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, EFCAB6-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PACSIN2, NA NA NA NA NA NA NA NA NA LTS-018 PHF21B, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TTLL12, ZC3H7B, KIAA0930, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, ARHGAP8, APOL2, AP1B1P1, TFIP11, PRR14L, SERHL2, BPIFC, XRCC6, TMEM211, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TTLL1, SAMM50, TXN2, TMEM184B, SULT4A1, GGA1, ARFGAP3, SEC14L3, RNU12, ATP5L2, GGT1, SNORD43, GGT5, INPP5J, SMC1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, POM121L9P, CARD10, PARVB, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, SDC4P, LRRC75B, OGFRP1, LINC00207, LGALS1, LGALS2, LIF, LIMK2, LOC400927, SRRD, MIR33A, LINC00229, MB, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, UPB1, PMM1, A4GALT, POLR2F, MIEF1, TUG1, FAM118A, CCDC157, PRR5-ARHGAP8, PRR5, ZMAT5, SEPT3, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, BIK, XPNPEP3, PARVG, BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, EFCAB6, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TSPO, TIMP3, TOP1P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 MIR658, MIR659, TST, SEC14L6, UPK3A, XBP1, YWHAH, MPPED1, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, SCUBE1, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, LDOC1L, POLDIP3, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1644, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.13142112258154 475 0.051219954594006 0.803672971996944 24238 0.23007554528398 2 2 0 -6.75556621684998 LTS-018 NA NA NA NA LTS-018 chr22 45768129 45944645 176517 * c(FBLN1, RIBC2, SMC1B) 0.0887416534661078 8 0.0414382070075432 1.29489888934275 189 0.471240521102582 4 4 0 -6.77387613125954 LTS-018 chr22 45944646 45946311 1666 * FBLN1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-018 chr22 45946312 46777918 831607 * c(LINC00899, MIR3619, MIR4763, MIR4762, PKDREJ, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, ATXN10, MIRLET7BHG, MIRLET7A3, MIRLET7B, GTSE1, PPARA, TTC38, PRR34, TRMU, LOC730668, WNT7B, CELSR1) 0.109677093489056 54 0.0516123674906259 0.844541940873787 1283 0.271520782487652 2 2 0 -6.89840416826205 LTS-018 chr22 46777919 46780410 2492 * CELSR1 NA 0 NA 0.618 1 NA NA NA NA NA LTS-018 chr22 46780411 46860219 79809 * CELSR1 0.208603310738424 3 0.0416693332480055 0.521247760954228 122 0.167531846699614 1 1 0 -6.74038717406237 LTS-018 chr22 46860220 46929454 69235 * CELSR1 NA 0 NA 0.768 1 NA NA NA NA NA LTS-018 chr22 46929455 51220734 4291280 * c(LINC01310, CHKB-AS1, MIR3201, MIR4535, RABL2B, CHKB, KLHDC7B, CPT1B, TYMP, GRAMD4, MLC1, MAPK8IP2, PLXNB2, BRD1, TBC1D22A, FAM19A5, LOC284933, RPL23AP82, NCAPH2, C22orf34, CHKB-CPT1B, LINC00898, IL17REL, ARSA, DENND6B, PIM3, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, CERK, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, CELSR1, PPP6R2, ZBED4, SCO2) 0.138496262969316 110 0.0564475119144719 0.78060789111137 3917 0.247974023938977 2 2 0 -6.75214101734076 LTS-018 chr22 51220735 51220846 112 * c(RABL2B, RPL23AP82) NA 0 NA 0.66066788103271 3 0.120088855991442 2 NA NA -5.76457157107191 LTS-018 chrX 2699993 2700027 35 * XG 0.164 1 NA 1.444 1 NA NA NA NA NA LTS-018 chrX 2700028 12712575 10012548 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.215051052750231 65 0.0821659963825575 0.53560628371521 2813 0.166737826180325 1 1 0 -7.37051770839443 LTS-018 chrX 12712576 12720018 7443 * FRMPD4 NA 0 NA 0.33 1 NA NA NA NA NA LTS-018 chrX 12720019 13790905 1070887 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, GPM6B, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.202197554457285 16 0.0825929526856458 0.477953811193672 1011 0.146230761806149 1 1 0 -6.83739835525504 LTS-018 chrX 13790906 13790958 53 * GPM6B NA 0 NA 0.521 1 NA NA NA NA NA LTS-018 chrX 13790959 57021465 43230507 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, SUPT20HL1, PHKA2-AS1, GAGE12D, LOC100132831, UXT-AS1, SCARNA9L, MIR500B, MTRNR2L10, MIR23C, PIR-FIGF, MIR4769, MIR4536-1, MIR4768, HUWE1, PQBP1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SSX3, TIMM17B, RRAGB, SCML2, PRDX4, EBP, RAI2, MAGED2, PIM2, IL1RAPL1, WDR45, PRAF2, CA5B, KLF8, CLCN5, BEND2, DGKK, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, NA NA NA NA NA NA NA NA NA LTS-018 FOXR2, PAGE3, ASB11, ASB9, CYBB, ZNF645, USP27X-AS1, FAM47A, MOSPD2, RIBC1, MAGEB6, USP51, CXorf38, DDX3X, DDX53, SPIN3, FAM47B, NA, SUPT20HL2, ARX, XAGE3, XAGE5, NUDT10, DMD, NR0B1, EIF1AX, EIF2S3, ELK1, PAGE2, ALAS2, FANCB, FGD1, VEGFD, CNKSR2, IQSEC2, PHF8, ACOT9, SMPX, GSPT2, FTSJ1, CXorf58, GAGE1, CXorf23, MAP7D2, KLHL34, TAB3, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GK, GPR82, GPKOW, APEX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 PCSK1N, GLRA2, SSX6, SSX7, SSX8, SSX9, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, CCDC22, MAGEH1, GRPR, UBQLN2, SH3KBP1, HSD17B10, ERAS, CA5BP1, ZNF81, ITIH6, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, MAP3K15, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, YY2, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, UQCRBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NDP, NHS, SPANXN5, TBC1D25, OTC, FOXP3, CDK16, MBTPS2, PDHA1, PDK3, CFP, PFKFB1, PHEX, PHKA2, PIGA, PLP2, FTHL17, POLA1, GPR173, NDUFB11, GNL3L, PPEF1, BCOR, FAM120C, GEMIN8, LINC01420, NUDT11, OTUD5, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, GRIPAP1, ZNF630, TMEM27, MIR362, MIR500A, MIR501, MIR502, SHROOM4, MID1IP1, ACE2, RBBP7, RBM3, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TSPYL2, ZNF674, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 NA, GAGE2B, GAGE13, NA, MAGEB17, WDR13, PORCN, WNK3, XAGE1B, BMX, SMS, SSX1, SSX5, SCARNA23, SNORA11, CDKL5, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, TSPAN7, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, LOC729609, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, ZNF41, ZNF157, CACNA1F, APOO, S100G, CXorf36, MAGIX, CXorf21, EFHC2, KLHL15, PPP1R2P9, MAGED4B, ZRSR2, USP11, USP9X, RBM10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 KDM5C, SMC1A, TMEM47, SRPX, UXT, SLC9A7, CCNB3, PIR, INE2, INE1, CASK, PAGE1, AKAP4, AP1S2, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, RGN, REPS2, BMP15, SLC38A5, MED14, SYAP1, SYTL5, PCYT1B, MAGED1, PAGE4, JADE3) 0.22075305676119 179 0.0742416961822115 0.538194875763098 21174 0.148249924236621 1 1 0 -9.51112030097369 LTS-018 NA NA NA NA LTS-018 chrX 57021466 57146006 124541 * SPIN3 NA 0 NA 0.324 1 NA NA NA NA NA LTS-018 chrX 57146007 57405237 259231 * c(FAAH2, SPIN2B, SPIN2A) NA 0 NA 0.303839887789638 98 0.0583117569025065 0 NA NA -8.87600879056872 LTS-018 chrX 57405238 57622607 217370 * c(FAAH2, ZXDB) 0.173122956370108 6 0.0952736409856717 0.554510391319761 126 0.204880703964875 1 1 0 -6.86102606306144 LTS-018 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 0.489768619255587 125 0.102402915155078 1 NA NA -5.78296536999488 LTS-018 chrX 61999880 64726328 2726449 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MTMR8, ZC4H2, LINC01278) 0 1 NA 0.539233823464717 711 0.193267980769709 1 1 0 -5.9389454858662 LTS-018 chrX 64726329 101473106 36746778 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, MIR676, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, VSIG4, DACH2, COX7B, MAP2K4P1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, NA NA NA NA NA NA NA NA NA LTS-018 YIPF6, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, TAF7L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 ARMCX6, POU3F4, ATRX, ERCC6L, GDPD2, JPX, HDAC8, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, LAS1L, FRMD8P1, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, STARD8, ARMCX2, HEPH, MED12) 0.190987704247143 71 0.0767586538813315 0.53816153524875 12456 0.161192972215188 1 1 0 -8.99167264673065 LTS-018 NA NA NA NA LTS-018 chrX 101473107 101609294 136188 * character(0) NA 0 NA 0.21 1 NA NA NA NA NA LTS-018 chrX 101609295 101625090 15796 * character(0) NA 0 NA 0.125577079734751 39 0.208906613129998 0 NA NA -5.82660723441778 LTS-018 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.434 1 NA NA NA NA NA LTS-018 chrX 101768565 127186469 25417905 * c(ZBTB33, TEX13C, PRR32, LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TENM1, STAG2, PGRMC1, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ACTRT1, RBMXL3, DOCK11, RAB40A, AMOT, AKAP14, RHOXF1, NKAPP1, H2BFWT, DCX, ZCCHC12, TSC22D3, AGTR2, CT83, SLC25A43, NRK, TMEM31, ACSL4, SEPT6, ATP1B4, NA NA NA NA NA NA NA NA NA LTS-018 KCNE5, CT47A11, IL1RAPL2, SNORA69, BEX3, GLUD2, RAB40AL, H2BFM, LOC286437, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, IL13RA1, IL13RA2, LAMP2, SLC25A53, LINC00890, SH2D1A, GLRA4, NDUFA1, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, WDR44, NUP62CL, TBC1D8B, TMEM255A, CXorf57, RBM41, MIR448, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, KIAA1210, RGAG1, LRCH2, RPL39, CXorf56, CT47B1, ZCCHC18, ARMCX5, UPF3B, CT47A7, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, RNF128, MORC4, LONRF3, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, CUL4B, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-018 TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.196052327797698 84 0.0854126059373676 0.533901493850842 10521 0.150715145184477 1 1 0 -8.26806859410718 LTS-018 NA NA NA NA LTS-018 chrX 127186470 128621112 1434643 * SMARCA1 NA 0 NA 0.310003061371367 40 0.116886576623973 0 NA NA -9.77614575503588 LTS-018 chrX 128621113 139586304 10965192 * c(MIR450B, MIR934, LINC00892, LINC00633, FGF13-AS1, LINC00629, HS6ST2-AS1, SLC9A6, ENOX2, PLAC1, UTP14A, ADGRG4, GPR119, LINC00889, ARHGAP36, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, ATP11C, FIRRE, HPRT1, OR13H1, CCDC160, CXorf66, IGSF1, LOC389895, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, NA NA NA NA NA NA NA NA NA LTS-018 VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, RAP2C, BCORL1, SMIM10, SMIM10L2B, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, XPNPEP2, ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.182371314088934 36 0.10711532132936 0.522795842711696 5647 0.155782321831926 1 1 0 -7.06398556458801 LTS-018 NA NA NA NA LTS-018 chrX 139586305 148075896 8489592 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, NA, FMR1, AFF2, LDOC1, LINC00632, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SLITRK2, TMEM257, MAGEC1) 0.17676404719285 26 0.100843763393601 0.581893170778329 1316 0.267926994697683 1 1 0 -7.95364029328772 LTS-018 chrX 148075897 148851528 775632 * c(LINC00893, AFF2, IDS, MAGEA11, TMEM185A, CXorf40A) 0.194348613392266 9 0.0494219362002115 0.502263596261516 522 0.180846992832695 1 1 0 -6.81537327497276 LTS-018 chrX 148851529 148853651 2123 * character(0) NA 0 NA 0.137 1 NA NA NA NA NA LTS-018 chrX 148853652 149014030 160379 * c(MAGEA8-AS1, MAGEA8) 0.177 1 NA 0.304110735769502 39 0.194692116540231 0 0 0 -6.05470142478635 LTS-018 chrX 149014031 149014081 51 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.5 1 NA NA NA NA NA LTS-018 chrX 149014082 153707202 4693121 * c(CSAG4, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, NA NA NA NA NA NA NA NA NA LTS-018 MAGEA12, MECP2, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, RPL10, BGN, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, LAGE3, TKTL1, CD99L2, MTMR1, FATE1, FAM50A, FAM58A, GPR50) 0.203020289138485 105 0.0466656469014692 0.542589100595365 5520 0.169535388997576 1 1 0 -7.20715996277898 LTS-018 NA NA NA NA LTS-018 chrX 153707203 153707343 141 * LAGE3 NA 0 NA 0.399 1 NA NA NA NA NA LTS-018 chrX 153707344 154489354 782011 * c(SMIM9, CMC4, RAB39B, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, IKBKG) 0.124800162135109 14 0.113548677657656 0.511322967236553 1212 0.258483408966002 1 1 0 -7.07349084366762 LTS-018 chrX 154489355 154774986 285632 * c(RAB39B, CLIC2, TMLHE) NA 0 NA 0.486359623915071 169 0.112460346475746 1 NA NA -5.78510023879498 LTS-018 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.197765195834129 25 0.169786758415765 0 NA NA -5.86282197001414 LTS-018 chrY 13309514 13310581 1068 * character(0) 0.25 1 NA 0.913728704738915 7 0.500385137383482 2 2 0 -5.76445834301901 LTS-018 chrY 21154508 21154528 21 * c(CD24, TTTY14) NA 0 NA 0.86 1 NA NA NA NA NA LTS-018 chr1 65893 909309 843417 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, KLHL17, LINC01128, LOC729737, OR4F5, LINC00115, PLEKHN1) 0.145 1 NA 1.01510893599102 341 0.434400964070014 2 2 0 -5.7656689444824 LTS-019 chr1 909310 1558792 649483 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, SSU72, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.134806142102642 83 0.0438039772392942 1.00722326692943 2401 0.303801671859548 2 2 0 -6.74619306947343 LTS-019 chr1 1558793 1562437 3645 * MIB2 0.168 1 NA 1.06618150610093 41 0.323012349684622 2 2 0 -5.76442588943006 LTS-019 chr1 1562438 1567616 5179 * c(MIB2, MMP23B) NA 0 NA 1.06155182596886 51 0.14632258748342 2 NA NA -5.76448734914393 LTS-019 chr1 1567617 1569873 2257 * MMP23B NA 0 NA 3.013 1 NA NA NA NA NA LTS-019 chr1 1569874 1588717 18844 * c(MMP23B, CDK11B) 0.326867567353852 9 0.164586181409957 1.29059819568518 97 0.594925532281546 6 4 2 -6.75888201971754 LTS-019 chr1 1588718 1588737 20 * CDK11B 0.289 1 NA 1.194 1 NA NA NA NA NA LTS-019 chr1 1588738 1603048 14311 * c(SLC35E2B, CDK11B) 0.133933081114532 7 0.0907282703881158 1.42719141105076 146 0.862329269239786 2 2 0 -6.73717877636148 LTS-019 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.75 1 NA NA NA NA NA LTS-019 chr1 1606859 1633268 26410 * c(SLC35E2B, MMP23A, CDK11B) 0.151 1 NA 0.390903059264805 43 0.316701822376804 0 0 0 -5.77831368775226 LTS-019 chr1 1633269 1639013 5745 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.719135926589641 40 0.383154885164787 1 NA NA -5.76456006784566 LTS-019 chr1 1639014 1645772 6759 * c(CDK11A, SLC35E2B, CDK11B) 0 1 NA 0.318764088734631 35 0.598769153480424 0 0 0 -5.76450794572142 LTS-019 chr1 1645773 1646658 886 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.352543041217897 8 0.219884222782289 0 NA NA -5.7648222526414 LTS-019 chr1 1646659 1646757 99 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.449 1 NA NA NA NA NA LTS-019 chr1 1646758 1647814 1057 * c(CDK11A, SLC35E2B, CDK11B) 0.496 1 NA 0.890066150761671 3 0.344683913172634 2 2 0 -5.76453517427308 LTS-019 chr1 1647815 1650967 3153 * c(CDK11A, SLC35E2B, CDK11B) 0.402584379564546 10 0.127700213173058 1.1062699339107 18 0.365267370064706 2 1 1 -6.73817716683096 LTS-019 chr1 1650968 1656641 5674 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) NA 0 NA 0.820713175748548 18 0.240604277394758 1 NA NA -5.76705259156936 LTS-019 chr1 1656642 1661298 4657 * c(SLC35E2B, SLC35E2) 0.103 1 NA 0.498294901218069 63 0.229651851423548 1 1 0 -5.76876817543537 LTS-019 chr1 1661299 1662163 865 * c(SLC35E2B, SLC35E2) NA 0 NA 0.675262763682889 19 0.112467019207218 1 NA NA -5.76442193687497 LTS-019 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 0.974 1 NA NA NA NA NA LTS-019 chr1 1663709 7904299 6240591 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, UTS2, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NA NA NA NA NA NA NA NA NA LTS-019 NADK, MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, THAP3, VAMP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.135874966629172 105 0.0499628378380889 1.04461478386684 5629 0.336390012035051 2 2 0 -6.73939346340442 LTS-019 NA NA NA NA LTS-019 chr1 7904300 12907379 5003080 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, HNRNPCL1, TNFRSF9, DRAXIN, CENPS, PRAMEF12, MIR34A, PRAMEF11, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, NA NA NA NA NA NA NA NA NA LTS-019 MIIP, PIK3CD-AS1, NMNAT1, HNRNPCL3, PRAMEF1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, C1orf158, FBXO44, TNFRSF8, H6PD, MFN2) 0.127686608200361 115 0.0488326974651603 0.998213877656863 6523 0.298477084312253 2 2 0 -6.82234539251701 LTS-019 NA NA NA NA LTS-019 chr1 12907380 12907385 6 * c(HNRNPCL1, HNRNPCL3) 0.329 1 NA 2.764 1 NA NA NA NA NA LTS-019 chr1 12907386 13183973 276588 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.378629027735515 19 0.102584553629067 1.18837435242048 72 0.63519730632123 3 2 1 -6.75905857298374 LTS-019 chr1 13183974 13801621 617648 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, NA, HNRNPCL2, PRAMEF19, PRAMEF20, NA) 0.079 1 NA 0.953500391198896 23 0.522088701896738 2 2 0 -5.77405171196671 LTS-019 chr1 13801622 14925728 1124107 * c(PDPN, LRRC38, KAZN, PRDM2) 0.129478214563509 16 0.066649206046784 1.03776926835169 429 0.394002710863226 2 2 0 -6.74887193381142 LTS-019 chr1 14925729 15250616 324888 * KAZN NA 0 NA 1.17 1 NA NA NA NA NA LTS-019 chr1 15250617 16748076 1497460 * c(CTRC, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.0953055900554489 77 0.0276828167978741 1.36861614557902 2738 0.825182740113293 3 3 0 -6.78326899931773 LTS-019 chr1 16748077 16748305 229 * SPATA21 NA 0 NA 0.856 1 NA NA NA NA NA LTS-019 chr1 16748306 16802533 54228 * c(CROCCP3, SPATA21, NECAP2) 0.135426388970617 3 0.0285365263010993 1.03864131026234 95 0.351513785393103 2 2 0 -6.75063900779817 LTS-019 chr1 16802534 16862454 59921 * CROCCP3 0.481 1 NA 0.91465462855575 11 0.182014434991993 2 2 0 -5.78155496062663 LTS-019 chr1 16862455 17012093 149639 * c(MST1P2, NBPF1, CROCCP2) 0.318972001701038 21 0.137561587938605 1.0176457904548 204 0.372187690426813 3 2 1 -6.86216549852773 LTS-019 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.344 1 NA NA NA NA NA LTS-019 chr1 17017583 17086233 68651 * c(MST1L, ESPNP, CROCC) 0.298975374683175 29 0.144539782649874 1.47948261197824 187 0.511448676076686 4 3 1 -6.74057037191737 LTS-019 chr1 17086234 17086794 561 * c(MST1L, CROCC) NA 0 NA 0.819 1 NA NA NA NA NA LTS-019 chr1 17086795 17197619 110825 * c(MST1L, CROCC) 0.355011467838982 8 0.122366472415562 1.17306461910645 34 0.302053991998114 3 2 1 -6.7602816624229 LTS-019 chr1 17197620 17251055 53436 * CROCC 0.182 1 NA 0.927361891110574 35 0.447141975460242 2 2 0 -5.766423677625 LTS-019 chr1 17251056 21583973 4332918 * c(LOC100506730, MINOS1-NBL1, MIR4695, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, PADI4, AKR7L, TMCO4, PLA2G2D, PADI1, PLA2G2E, HTR6, LINC01141, PADI6, PLA2G2C, SH2D5, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, CAMK2N1, RCC2, KIF17, SDHB, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, ACTL8, CAPZB, IGSF21, NA NA NA NA NA NA NA NA NA LTS-019 AKR7A2, ALDH4A1, EIF4G3, CROCC, CDA) 0.13342806302776 136 0.0435114833464286 1.05061787504834 5109 0.502699328085034 2 2 0 -6.74971756830185 LTS-019 NA NA NA NA LTS-019 chr1 21583974 21750008 166035 * c(LOC100506801, ECE1) 0.411 1 NA 1.01976922534833 45 0.576369986741296 2 2 0 -5.7644976940984 LTS-019 chr1 21750009 21808159 58151 * NBPF3 0.269793570479953 11 0.164736980448449 1.02098316737075 156 0.454111201096301 4 3 1 -6.79483446112588 LTS-019 chr1 21808160 21896767 88608 * c(ALPL, NBPF3) 0.162 1 NA 1.1544744290908 45 0.233894688380316 2 2 0 -5.77551184291566 LTS-019 chr1 21896768 25599160 3702393 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, CLIC4, SYF2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, NCMAP, LDLRAD2, WNT4, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, GRHL3, IL22RA1, RAP1GAP, RHD, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, NA NA NA NA NA NA NA NA NA LTS-019 USP48, RUNX3, STPG1, ZBTB40, CDC42) 0.118048980744417 108 0.0517539936304226 1.01362118581932 4927 0.388768761786785 2 2 0 -6.85000705430965 LTS-019 NA NA NA NA LTS-019 chr1 25599161 25656954 57794 * c(RSRP1, RHD) NA 0 NA 1.74129118139292 74 0.359290026599159 4 NA NA -5.76456954934892 LTS-019 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.187 1 NA NA NA NA NA LTS-019 chr1 25666924 33235626 7568703 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, DCDC2B, LINC01225, PDIK1L, PAQR7, FAM76A, TXLNA, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, HMGN2, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, NA NA NA NA NA NA NA NA NA LTS-019 STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZBTB8B, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.141097495941941 157 0.0509919567235669 0.993433653900913 9324 0.281555422959877 2 2 0 -6.83846468714752 LTS-019 NA NA NA NA LTS-019 chr1 33235627 33475879 240253 * c(TMEM54, RNF19B, AK2, FNDC5, HPCA, KIAA1522, S100PBP, YARS) 0.494 1 NA 1.00224157061567 539 0.198635593954021 2 2 0 -5.7687366360977 LTS-019 chr1 33475880 35184057 1708178 * c(MIR3605, AZIN2, CSMD2, HMGB4, A3GALT2, ZNF362, PHC2, AK2, CSMD2-AS1, TRIM62, ZSCAN20, C1orf94) 0.204384031888156 19 0.117237201448639 1.02214436456293 1149 0.311125611686754 2 2 0 -6.90934125458936 LTS-019 chr1 35184058 35222843 38786 * GJB5 NA 0 NA 0.602 1 NA NA NA NA NA LTS-019 chr1 35222844 37324888 2102045 * c(TMEM35B, SMIM12, GJB4, OSCP1, C1orf216, COL8A2, CSF3R, AGO3, AGO4, NCDN, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, GRIK3, TFAP2E, ADPRHL2, EVA1B, MAP7D1, PSMB2, DLGAP3, CLSPN, SFPQ, MRPS15, LOC653160, SH3D21, ZMYM1, KIAA0319L, STK40, LSM10, ZMYM4, ZMYM6, THRAP3) 0.203283330750457 33 0.0764348851419734 0.654703258639258 3076 0.183922965056226 1 1 0 -6.76574376875024 LTS-019 chr1 37324889 37325489 601 * GRIK3 NA 0 NA 1.047 1 NA NA NA NA NA LTS-019 chr1 37325490 37346240 20751 * GRIK3 0 1 NA 1.4968809718019 13 1.96392104193991 3 3 0 -5.76442146063451 LTS-019 chr1 37346241 37959499 613259 * c(MIR4255, GRIK3, MEAF6, LINC01137, ZC3H12A) 0.471 1 NA 1.07244960264729 111 0.200232749090537 2 2 0 -5.7745584172521 LTS-019 chr1 37959500 52376955 14417456 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR761, MIR3659, SLFNL1-AS1, MKNK1-AS1, GJA9-MYCBP, MIR5581, MIR5584, LINC00853, TSPAN1, PDZK1IP1, ZMPSTE24, CDKN2C, AKR1A1, TESK2, PPIE, PPIH, CAP1, LRRC41, SF3A3, EBNA1BP2, KIF2C, FAF1, MED8, TOE1, ERMAP, OSBPL9, PLK3, CCDC163, DMBX1, TMCO2, ZNF684, C1orf122, KLF17, TMEM125, COL9A2, KNCN, MOB3C, MANEAL, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, NA NA NA NA NA NA NA NA NA LTS-019 CTPS1, CYP4A11, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, ELAVL4, CYP4Z1, SLC5A9, SLFNL1, EPS15, FAAH, FHL3, FOXJ3, SCMH1, TTC39A, FOXE3, FOXD2, MAST2, SZT2, MACF1, MMACHC, CYP4X1, MYCBP, HEYL, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, RSPO1, EPHA10, RIMKLA, GUCA2A, GUCA2B, GNL2, LINC01343, C1orf228, ZFP69, TCTEX1D4, BMP8A, INPP5B, IPP, SVBP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MIR30C1, MIR30E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MPL, SLC2A1-AS1, FAM183A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, NRDC, YBX1, PRDX1, ZNF691, UTP11, TMEM69, HPCAL4, CMPK1, ATP6V0B, LURAP1, POU3F1, SPATA6, TRIT1, RHBDL2, C1orf109, CDCA8, RNF220, PPT1, POMGNT1, DMAP1, ZSWIM5, PTPRF, RAB3B, HIVEP3, RLF, GPBP1L1, RPS8, DMRTA2, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, ATPAF1, MEAF6, EXO5, ELOVL1, ST3GAL3, STIL, SLC2A1, ZFP69B, SLC6A9, BMP8B, SNORA55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TAL1, TIE1, PPIEL, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, BEND5, YRDC, PPCS, SNIP1, HYI, ZMYND12, RAD54L, NT5C1A, FOXD2-AS1, HPDL, AGBL4, MFSD2A, PIK3R3, MKNK1, PTCH2, B4GALT2, PABPC4, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20) 0.431242057642824 270 0.110049189119614 1.03093470460549 14890 0.260409060251573 2 1 1 -6.75202996428162 LTS-019 NA NA NA NA LTS-019 chr1 52376956 52377685 730 * RAB3B 0 1 NA 1.31982426126377 13 0.840097872808541 3 3 0 -5.76441288774086 LTS-019 chr1 52377686 52698980 321295 * c(KTI12, TXNDC12, RAB3B, BTF3L4, ZFYVE9) 0.194436262408093 5 0.230654069983601 1.03929854798643 410 0.451365477548802 2 2 0 -6.76587805151852 LTS-019 chr1 52698981 52703192 4212 * ZFYVE9 NA 0 NA 0.594 1 NA NA NA NA NA LTS-019 chr1 52703193 59042997 6339805 * c(LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, OMA1, LRRC42, TCEANC2, PODN, CPT2, GLIS1, DAB1, SLC25A3P1, LEXM, DHCR24, DIO1, C1orf168, TMEM61, CDCP2, CC2D1B, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, GPX7, FAM151A, FAM159A, MROH7, LDLRAD1, TACSTD2, MAGOH, ZYG11A, ORC1, MRPL37, HSPB11, YIPF1, C1orf123, TTC22, ECHDC2, PRKAA2, NDC1, CYB5RL, SCP2, DMRTB1, SLC1A7, COA7, TTC4, C8A, C8B, NA NA NA NA NA NA NA NA NA LTS-019 LRP8, BSND, ZYG11B, PRPF38A, PLPP3, ZFYVE9, TMEM59) 0.211553287022126 91 0.0591444951493485 0.668531425609188 4925 0.20315540210541 1 1 0 -6.74714037149779 LTS-019 NA NA NA NA LTS-019 chr1 59042998 59096045 53048 * TACSTD2 0.356 1 NA 0.854079910205514 9 1.2124492887448 2 2 0 -5.76522821065406 LTS-019 chr1 59096046 59096250 205 * character(0) 0.450257565998999 9 0.0340200104513669 1.44583085596237 13 0.888928756050412 0 0 0 -7.3316945281044 LTS-019 chr1 59096251 59120399 24149 * character(0) 0.235 1 NA 0.692765420739223 5 0.232559024765757 1 1 0 -5.76489533321519 LTS-019 chr1 59120400 74492267 15371868 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, MIR4711, NEGR1-IT1, ZRANB2-AS2, PATJ, HHLA3, MYSM1, LRRIQ3, C1orf87, UBE2U, CTH, IL23R, CYP2J2, KANK4, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, NEGR1, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, JUN, LEPR, C1orf141, MIR101-1, MIR186, MGC34796, NFIA, ROR1, HOOK1, PDE4B, PGM1, PIN1P1, L1TD1, LEPROT, RAVER2, FGGY, NA NA NA NA NA NA NA NA NA LTS-019 LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, RPE65, HSD52, USP1, DLEU2L, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, SRSF11, ZRANB2, DNAJC6) 0.215838375476797 135 0.0762718690602915 0.677783709241411 6631 0.222773905785037 1 1 0 -6.81266711092565 LTS-019 NA NA NA NA LTS-019 chr1 74492268 84331810 9839543 * c(PIGK, FPGT-TNNI3K, MIR548AP, IFI44, IFI44L, DNAJB4, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, MGC27382, SLC44A5, USP33, ADGRL2, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, MIGA1, LHX8, MSH4, TNNI3K, GIPC2, PTGFR, RABGGTB, ADGRL4, SNORD45C, ST6GALNAC5, FPGT, FUBP1, NEXN) 0.231826206734799 44 0.0767122620032094 0.707664227097537 3232 0.199062313815814 1 1 0 -7.3025124341846 LTS-019 chr1 84331811 89418841 5087031 * c(LINC01364, MIR4423, MIR548AP, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, CLCA4, LPAR3, DDAH1, MCOLN2, COL24A1, GNG5, GTF2B, LINC01140, CYR61, UOX, LINC01555, SH3GLB1, ZNHIT6, MCOLN3, PRKACB, PKN2, KYAT3, ODF2L, DNASE2B, LOC646626, TTLL7, RPF1, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.218251161920113 75 0.0702432914946331 0.672881882772595 3154 0.881105842882607 1 1 0 -6.73381992098453 LTS-019 chr1 89418842 89420723 1882 * KYAT3 NA 0 NA 0.512 1 NA NA NA NA NA LTS-019 chr1 89420724 94496187 5075464 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, ABCA4, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, GCLM, ZNF326, BTBD8, DNTTIP2, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.227295796279257 62 0.0660779070019618 0.631315638907057 3745 0.174032321506829 1 1 0 -6.98675040237218 LTS-019 chr1 94496188 94496551 364 * ABCA4 NA 0 NA 0.922 1 NA NA NA NA NA LTS-019 chr1 94496552 98348977 3852426 * c(TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.228854336516256 14 0.100674783773853 0.705888852193032 1155 0.193832260041766 1 1 0 -6.96158525498132 LTS-019 chr1 98348978 98349267 290 * DPYD NA 0 NA 0.543 1 NA NA NA NA NA LTS-019 chr1 98349268 116676668 18327401 * c(LINC01349, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR4256, FAM212B-AS1, MIR2682, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, MAB21L3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, S1PR1, CELSR2, HIPK1, EXTL2, NTNG1, NA NA NA NA NA NA NA NA NA LTS-019 WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, NGF, NHLH2, NRAS, OVGP1, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RSBN1, PALMD, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, TSHB, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, PROK1, CASQ2, PSRC1, STRIP1, CDC14A, RTCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC16A4, DNAJA1P5, CD53, LRIG2, PLPPR4) 0.22771612325988 234 0.0693158056852451 0.65679956256504 12049 0.215759259903776 1 1 0 -6.76955416581631 LTS-019 NA NA NA NA LTS-019 chr1 116676669 117142700 466032 * c(MAB21L3, IGSF3, ATP1A1, ATP1A1-AS1, CD58) 0.468 1 NA 0.647971441805128 350 0.136277192204061 1 1 0 -5.7732770618799 LTS-019 chr1 117142701 120927081 3784381 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HIST2H2BA, NBPF7, NOTCH2, HAO2, GDAP2, FAM46C, PTGFRN, LINC00622, FAM72B, TBX15, VTCN1, TRIM45, REG4, TTF2, ZNF697, CD2, CD101) 0.323807944722939 52 0.107624010340676 0.662716737726229 2772 0.433612900589874 1 1 0 -7.25351244900046 LTS-019 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.70778457607336 79 0.219078108870861 1 NA NA -5.78413881146867 LTS-019 chr1 143912360 144013853 101494 * FAM72D 0.277 1 NA 0.969488769463451 5 0.169606308844925 2 2 0 -5.77408273860746 LTS-019 chr1 144013854 144895428 881575 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.284981331494257 19 0.0660335286092209 1.00732225637445 170 0.494332461112249 4 3 1 -7.37254289161516 LTS-019 chr1 144895429 144897987 2559 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.452 1 NA NA NA NA NA LTS-019 chr1 144897988 144906510 8523 * c(NBPF20, LOC653513, PDE4DIP) 0.0700079731719821 2 0.00141421356237309 1.33693130286625 105 0.387500339832062 19 18 1 -6.90935219539283 LTS-019 chr1 144906511 144909957 3447 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.89 1 NA NA NA NA NA LTS-019 chr1 144909958 145283733 373776 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, SEC22B, PDE4DIP) 0.256816836745783 63 0.0824835690941348 1.04764105681795 443 0.434827036590645 1 1 0 -7.09334757801326 LTS-019 chr1 145283734 145283822 89 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 1.345 1 NA NA NA NA NA LTS-019 chr1 145283823 146322339 1038517 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, GPR89A, NA, NA, NA, POLR3GL, ITGA10, PEX11B, RBM8A) 0.251500807513519 9 0.181055240189286 1.34186683237944 1286 0.635538762103975 4 3 1 -6.88355489667817 LTS-019 chr1 146322340 146509468 187129 * c(NBPF10, NBPF20, NBPF12, NA, NA, NA, LOC728989) 0.327 1 NA 1.45536078474347 29 0.521655313410927 3 3 0 -5.76480930511717 LTS-019 chr1 146509469 161336071 14826603 * c(MIR190B, C1orf68, MSTO2P, TSTD1, CADM3-AS1, LOC100132111, FCGR1CP, C2CD4D, LINC00624, MIR4257, MIR4258, LINC01133, LOC100505666, PMF1-BGLAP, TNFAIP8L2-SCNM1, SCAMP3, MIR5087, MIR5187, FALEC, SF3B4, ADAR, HAX1, C1orf61, SEMA6C, PMVK, FAM189B, NES, JTB, MTMR11, MLLT11, SLC27A3, TDRKH, CELF3, PMF1, GLMP, VPS45, CHRNB2, PGLYRP3, SLAMF6, FCRL1, FCRL3, CKS1B, THEM4, CLK2, GABPB2, TCHHL1, RPTN, TDRD10, SHE, NA NA NA NA NA NA NA NA NA LTS-019 KLHDC9, OR10J5, DCST2, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, S100A16, ITLN2, CREB3L4, CIART, LELP1, DCST1, BNIPL, LRRC71, PYHIN1, CTSK, CTSS, SPRR4, TTC24, PDIA3P1, ECM1, EFNA1, EFNA3, EFNA4, LCE4A, KRTCAP2, CRTC2, ENSA, ETV3, FCER1A, FCER1G, FCGR1A, FDPS, KIAA0907, FLG, POGZ, SYT11, RPRD2, FMO5, SMG5, NCSTN, SNAPIN, RUSC1, CA14, ACKR1, LCE5A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ARHGAP30, CFAP126, CFAP45, NBPF14, C1orf43, CHTOP, LCE2B, GBA, GBAP1, OR10J1, USP21, GJA5, GJA8, SLC39A1, RIIAD1, THEM5, NBPF15, RUSC1-AS1, C1orf204, LAMTOR2, TMOD4, CERS2, HDGF, HIST2H2AB, APCS, APOA2, HIST2H2BC, S100A7A, LINGO4, RXFP4, IFI16, OR10R2, FCRL6, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNJ9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KCNJ10, KCNN3, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, C1orf189, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, LOR, ARNT, LY9, MIR9-1, MCL1, SMCP, MEF2D, MNDA, MPZ, HIST2H2BF, ETV3L, OR10J3, KPRP, LCE6A, MTX1, MUC1, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, NPR1, NTRK1, CRNN, DCAF8, F11R, BOLA1, ZBTB7B, RRNAD1, APH1A, PLEKHO1, ACP6, GPR89B, UFC1, OAZ3, CD244, PFDN2, PI4KB, PKLR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 DPM3, MRPS21, ADAMTSL4, CRCT1, GON4L, GPATCH4, DUSP23, C1orf56, PPOX, MSTO1, GOLPH3L, KIRREL, YY1AP1, PRCC, UBE2Q1, ITLN1, PRKAB2, FAM63A, ASH1L, LENEP, SLC50A1, SLAMF8, CDC42SE1, UBQLN4, PSMB4, OTUD7B, PSMD4, RAB25, PGLYRP4, RHBG, ATP8B2, VANGL2, LINC00869, PBXIP1, S100A14, PRR9, GATAD2B, CGN, IGSF9, ZNF687, HCN3, SLAMF7, CADM3, PEX19, PRUNE1, RAB13, RFX5, RIT1, HAPLN2, BCL9, RORC, RPS27, S100A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A12, S100A13, BGLAP, BCAN, SDHC, SEMA4A, NBPF13P, PPIAL4D, LOC645166, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, MRPL9, SLAMF1, INTS3, HIST2H3D, PCP4L1, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPTA1, SSR2, SCARNA4, SNORA80E, MIR554, MIR555, MIR92B, VPS72, THBS3, TCHH, TPM3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CCT3, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, USF1, MIR765, DAP3, SCNM1, FCRL2, MRPL24, TNFAIP8L2, C1orf54, PAQR6, TRIM46, TARS2, FLAD1, OR6N2, OR6K2, NECTIN4, SNX27, ANP32E, ISG20L2, HIST2H2AC, FCRL5, FCRL4, HIST2H2BE, PIP5K1A, TAGLN2, HORMAD1, TOMM40L, ANXA9, TMEM79, CASQ1, LCE3D, PEA15, B4GALT3, ADAM15, CD84, AQP10, SLAMF9, SELENBP1, SH2D2A, PYGO2, CD1A, CD1B, CD1C, NUP210L, CD1D, PRPF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CD1E, ARHGEF2, DEDD, CD5L, MEX3A, PIGM, IGSF8, AIM2, ADAMTS4, CHD1L, CD48, SLC25A44, ARHGEF11, SETDB1, UBAP2L, SV2A, DENND4B, NR1I3) 0.352713702532431 414 0.0931645652542704 1.36576225358453 24037 0.389429856431366 3 2 1 -6.80138172541932 LTS-019 NA NA NA NA LTS-019 chr1 161336072 161336165 94 * CFAP126 NA 0 NA 1.178 1 NA NA NA NA NA LTS-019 chr1 161336166 161571035 234870 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, FCGR2C) 0.375728719341039 11 0.0804192423829928 1.15522352105962 262 0.348110628340935 3 2 1 -6.79418563633392 LTS-019 chr1 161571036 161575983 4948 * HSPA7 NA 0 NA 1.852 1 NA NA NA NA NA LTS-019 chr1 161575984 172381599 10805616 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-019 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.361224224187063 213 0.0839703214340834 1.38628006332745 7165 0.425431800893394 3 2 1 -6.74427038004078 LTS-019 NA NA NA NA LTS-019 chr1 172381600 176660247 4278648 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.347399679944789 51 0.0944851933622718 1.32447064404952 2390 1.01892151972493 3 2 1 -6.75912080104371 LTS-019 chr1 176660248 178888706 2228459 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.356242054186695 12 0.0602999447208149 1.50469584677832 1263 0.703275046861839 3 2 1 -6.7516964418677 LTS-019 chr1 178888707 179834354 945648 * c(AXDND1, FAM163A, TDRD5, TOR1AIP2, ABL2, RALGPS2, TOR3A, SOAT1, NPHS2, FAM20B) 0.343250568436386 39 0.0934368738385042 1.38271827216878 1165 0.439978784397475 3 2 1 -6.76082046961481 LTS-019 chr1 179834355 179851181 16827 * c(TOR1AIP2, TOR1AIP1) NA 0 NA 1.107 1 NA NA NA NA NA LTS-019 chr1 179851182 180013294 162113 * c(TOR1AIP1, CEP350) 0.329407933563161 8 0.195455466246698 1.00662684750997 234 0.224567155360688 2 1 1 -6.84600222732629 LTS-019 chr1 180013295 180080629 67335 * CEP350 0.46 1 NA 0.991340418936852 133 0.205954940909709 2 2 0 -5.766369294951 LTS-019 chr1 180080630 181028733 948104 * c(MIR3121, LHX4-AS1, STX6, FLJ23867, MR1, QSOX1, KIAA1614, ACBD6, LHX4, XPR1, CEP350) 0.466709082342172 27 0.0343249097624368 1.00842780636286 1169 0.258484336828254 2 1 1 -7.88615109199007 LTS-019 chr1 181028734 181029053 320 * MR1 0.373 1 NA 1.07012885706113 9 0.206507129282368 2 2 0 -5.76441447988853 LTS-019 chr1 181029054 181695403 666350 * c(GM140, MR1, IER5, CACNA1E) 0.257528238814202 9 0.211376901397585 1.01348517271075 175 0.645545383761587 2 2 0 -6.9125739140562 LTS-019 chr1 181695404 181702616 7213 * CACNA1E 0.489 1 NA 1.14399796749056 21 0.441079347143108 2 2 0 -5.76462315155881 LTS-019 chr1 181702617 204589101 22886485 * c(MIR181A1HG, GS1-279B7.1, MIR1231, MIR1278, MIR548F1, ZBED6, PCAT6, MIR4735, MIR5191, RNU6-72P, ARPC5, PRG4, TIMM17A, LRRN2, IVNS1ABP, KDM5B, CFHR4, CFHR3, OCLM, CHI3L1, CHIT1, TSEN15, FAM129A, ATP6V1G3, ZNF648, TEDDM1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, NEK7, CSRP1, LOC148709, PTPRVP, SHISA4, DENND1B, DHX9, ELF3, F13B, PLEKHA6, KIF21B, NMNAT2, COLGALT2, RGL1, CAMSAP2, FMOD, CRB1, ZNF281, PHLDA3, NA NA NA NA NA NA NA NA NA LTS-019 NR5A2, TMEM9, LMOD1, ASPM, OPTC, GLUL, LINC00303, LOC284648, SMG7-AS1, GPR25, UBE2T, CFH, CFHR1, CFHR2, BRINP3, KCNT2, RGSL1, ZBTB41, RPS10P7, KISS1, LINC00272, C1orf53, LAD1, LAMC1, LAMC2, NA, APOBEC4, MIR181B1, MIR181A1, MDM4, RGS21, LOC440704, MYBPH, MYOG, PPP1R12B, NCF2, ATP2B4, GLRX2, ADIPOR1, PDC, UCHL5, CYB5R1, PIK3C2B, PKP1, PLA2G4A, SWT1, LAX1, C1orf27, ETNK2, LINC00862, PRELP, IPO9, C1orf106, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LHX9, PTGS2, PTPN7, PTPRC, RABIF, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RNPEP, MGAT4EP, RGS18, ASCL5, SNRPE, TROVE2, SNORA77, TNNI1, TNNT2, TPR, LINC01136, CACNA1E, CACNA1S, BTG2, CDC73, EDEM3, NPL, CFHR5, C1orf21, SHCBP1L, TRMT1L, DDX59, HMCN1, LINC00260, PPP1R15B, PPFIA4, RGS8, B3GALT2, NAV1, IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A, SMG7, KIF14) 0.447793061690767 319 0.0803515239560661 1.02546266651436 14652 0.267708454096383 2 1 1 -6.86053033131818 LTS-019 NA NA NA NA LTS-019 chr1 204589102 204938012 348911 * c(LRRN2, NFASC, MDM4) 0 1 NA 1.04090630926621 117 0.503746480389261 2 2 0 -5.76441982793671 LTS-019 chr1 204938013 205053001 114989 * c(NFASC, TMEM81, CNTN2) 0.319075655722634 13 0.208119541585464 1.04288619069856 513 0.609564668794506 3 2 1 -6.77650651476196 LTS-019 chr1 205053002 205238275 185274 * c(DSTYK, TMEM81, RBBP5, TMCC2) 0.486 1 NA 1.01612082438693 341 0.207275461083297 2 2 0 -5.76551558907323 LTS-019 chr1 205238276 214837608 9599333 * c(MIR4260, MIR3122, LINC00538, CENPF, IL24, SLC26A9, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, MFSD4A, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, C1orf186, MIR135B, ATF3, NEK2, G0S2, IL20, CDK18, DTL, PFKFB2, PIGR, PLXNA2, NA NA NA NA NA NA NA NA NA LTS-019 KLHDC8A, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, SLC30A1, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00467, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, LEMD1, CD34, IKBKE, TMCC2, LPGAT1) 0.448451363773788 157 0.0799743196370219 1.01456849793205 7666 0.263216050589241 2 1 1 -6.88088208332952 LTS-019 NA NA NA NA LTS-019 chr1 214837609 219783370 4945762 * c(LINC00210, CENPF, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.442075616312308 39 0.0581062826290898 1.10180209997322 1548 0.318705637061556 2 1 1 -6.97095132371775 LTS-019 chr1 219783371 219783381 11 * character(0) NA 0 NA 0.838 1 NA NA NA NA NA LTS-019 chr1 219783382 219785375 1994 * character(0) NA 0 NA 0.543746059040258 39 0.379551985703608 1 NA NA -5.7647409837365 LTS-019 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 1.166 1 NA NA NA NA NA LTS-019 chr1 220088472 223567803 3479332 * c(BPNT1, DUSP10, BROX, CCDC185, EPRS, RAB3GAP2, RNU5F-1, HLX, MIA3, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, C1orf115, HHIPL2, DISP1, TAF1A) 0.451608313565168 44 0.0794997141218416 1.03255340021365 2084 0.273862157190602 2 1 1 -6.86260022644865 LTS-019 chr1 223567804 223805663 237860 * c(CCDC185, CAPN8) 0 1 NA 0.988559231501351 127 0.460688622470906 2 2 0 -5.76597007825707 LTS-019 chr1 223805664 225491063 1685400 * c(MIR320B2, MIR4742, DNAH14, CNIH3, FBXO28, CNIH4, CAPN8, NVL, TP53BP2, WDR26, CAPN2, DEGS1) 0.293771080836599 9 0.230445281526391 0.994091866266554 1327 0.302218130212885 2 1 1 -6.91297523568122 LTS-019 chr1 225491064 225555512 64449 * DNAH14 0.418 1 NA 0.986691553875358 111 0.163644550982729 2 2 0 -5.76802680052928 LTS-019 chr1 225555513 237023239 11467727 * c(NA, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR3620, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, MIR5008, LEFTY1, SPHAR, CAPN9, LYST, SNAP47, CCSAP, DNAH14, C1orf131, EDARADD, MRPL55, HIST3H2BB, PARP1, SLC35F3, B3GALNT2, EXOC8, LOC149373, RNF187, SDE2, AGT, IBA57, EPHX1, COG2, RBM34, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GNG4, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, NA NA NA NA NA NA NA NA NA LTS-019 IRF2BP2, ITPKB, ARF1, STUM, FAM89A, KCNK1, COA6, LBR, LGALS8, ZNF847P, TRIM67, H3F3AP4, MTR, NID1, TRIM17, ARID4B, EGLN1, MAP10, HEATR1, ENAH, NUP133, ERO1B, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, JMJD4, SRP9, SNORA14B, TARBP1, TBCE, LEFTY2, GPR137B, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MLK4, CDC42BPA, C1orf198, ACTN2, WNT3A, HIST3H2A, GGPS1, TMEM63A, TOMM20, URB2) 0.441509979026728 262 0.0924161960786714 1.00921521644911 10183 0.251298932460014 2 1 1 -6.86564330073129 LTS-019 NA NA NA NA LTS-019 chr1 237023240 237024460 1221 * MTR NA 0 NA 1.381 1 NA NA NA NA NA LTS-019 chr1 237024461 245848996 8824536 * c(AKT3, LOC100130331, MIR3123, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, ADSS, PLD5, C1orf100, FH, OPN3, C1orf101, NA, HNRNPU, LOC339529, LINC01139, MAP1LC3C, MTR, DESI2, KIF26B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, LINC01347, EFCAB2, KMO, EXO1, CEP170) 0.430843600662734 78 0.120680907569845 1.06429676355643 3513 0.352037434608019 2 1 1 -6.77219492935169 LTS-019 chr1 245848997 245850095 1099 * KIF26B 0.431 1 NA 1.05262758077331 25 0.190801965398682 2 2 0 -5.76441400553197 LTS-019 chr1 245850096 247319489 1469394 * c(ZNF670-ZNF695, LINC01341, CNST, LOC255654, AHCTF1, C1orf229, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, ZNF670) 0.264719059716205 9 0.221326932638373 1.03210871322732 969 0.376405302511336 2 2 0 -6.9169824348387 LTS-019 chr1 247319490 247322298 2809 * ZNF124 0.476 1 NA 1.06686864715042 29 0.121816687767806 2 2 0 -5.76449955237303 LTS-019 chr1 247322299 248604694 1282396 * c(MIR3916, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2W5, OR13G1, ZNF124, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496) 0.428178756441026 45 0.0740330393073992 1.11371859212123 1173 0.784908863980174 2 1 1 -6.76018870273933 LTS-019 chr1 248604695 248604881 187 * character(0) 0.271 1 NA 1.09544710225165 3 1.71430724589653 2 2 0 -5.76441024743811 LTS-019 chr1 248604882 249214082 609201 * c(MIR3124, OR2T34, OR2T10, OR2T11, PGBD2, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.291065621278294 13 0.182812956113829 0.991555908993746 552 0.627404824445802 3 2 1 -6.9377437716089 LTS-019 chr1 249214083 249214134 52 * character(0) NA 0 NA 1.213 1 NA NA NA NA NA LTS-019 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.175 1 NA 1.01374734086772 85 0.202223733462099 2 2 0 -5.76580471754382 LTS-019 chr2 218387 26257670 26039284 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, NA NA NA NA NA NA NA NA NA LTS-019 GRHL1, HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, ACP1, SNTG2, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TPO, TSSC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LINC01249, RAD51AP2, DNAJC27-AS1, MYT1L-AS1, VSNL1, PXDN, COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.135650969719441 211 0.0494904667238758 1.01773176623523 10794 0.294194915754978 2 2 0 -6.80342746301391 LTS-019 NA NA NA NA LTS-019 chr2 26257671 26321481 63811 * RAB10 NA 0 NA 1.387 1 NA NA NA NA NA LTS-019 chr2 26321482 26539222 217741 * c(RAB10, GAREM2, ADGRF3, HADHA, HADHB) 0.200562451215523 5 0.192755804063068 1.37647467284389 499 0.703944546374805 5 4 1 -6.81168185105304 LTS-019 chr2 26539223 26684692 145470 * c(ADGRF3, SELENOI, DRC1, OTOF) 0.363 1 NA 1.40972544949389 353 0.304779668361357 3 3 0 -5.76441066843407 LTS-019 chr2 26684693 27547581 862889 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SLC5A6, OTOF) 0.35811158448096 30 0.0443269073209905 1.40753707349333 1984 0.310921476254634 3 2 1 -6.74025891520247 LTS-019 chr2 27547582 30865545 3317964 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, MPV17, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.367508889326914 68 0.0772686995588697 1.32111622389839 3557 0.302232058448724 3 2 1 -6.82765002607233 LTS-019 chr2 30865546 30865666 121 * LCLAT1 NA 0 NA 0.082 1 NA NA NA NA NA LTS-019 chr2 30865667 30867110 1444 * LCLAT1 0.37259234679407 3 0.0553383531859535 0.725195668473541 40 0.497696684481211 8 5 3 -6.74677297932112 LTS-019 chr2 30867111 30953511 86401 * CAPN13 NA 0 NA 1.235 1 NA NA NA NA NA LTS-019 chr2 30953512 32983526 2030015 * c(MIR4765, EHD3, CAPN14, MEMO1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.348788803583267 33 0.0775799929300738 1.41722052658435 1761 0.423500122999059 3 2 1 -6.75315325403544 LTS-019 chr2 32983527 33174019 190493 * c(LOC100271832, LINC00486, LTBP1, TTC27) NA 0 NA 1.38331548092366 69 0.273140271368279 3 NA NA -5.76500254899664 LTS-019 chr2 33174020 33246000 71981 * LTBP1 NA 0 NA 0.945 1 NA NA NA NA NA LTS-019 chr2 33246001 33392911 146911 * LTBP1 0.445 1 NA 1.03475206566936 31 0.189062343930443 2 2 0 -5.76442557344601 LTS-019 chr2 33392912 74732932 41340021 * c(SNORA36C, SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LOC100133985, LINC01119, DBIL5P2, DCTN1-AS1, ARHGEF33, LOC100288911, MIR3126, MIR3682, CEBPZOS, BOLA3-AS1, INO80B-WBP1, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, RMDN2-AS1, CEBPZ, MPHOSPH10, SMYD5, C1D, CCT7, CCT4, CDC42EP3, STAMBP, B3GNT2, SIX2, MTHFD2, PROKR1, GPR75, SNRNP27, GTF2A1L, STON1, CFAP36, TEX261, CCDC85A, WDR92, NA NA NA NA NA NA NA NA NA LTS-019 MRPL53, ADD2, PPP1R21, C2orf73, CLHC1, PLEKHH2, GALM, TMEM178A, AHSA2, COMMD1, FBXO41, PUS10, LINC00309, MYADML, RMDN2, ASPRV1, LBX2-AS1, CYP1B1, DCTN1, OXER1, CLEC4F, KCNG3, DGUOK, EGR4, ALMS1P1, TET3, GKN2, APLF, TMEM17, SPRED2, EMX1, EPAS1, EFEMP1, AAK1, CEP68, PSME4, EXOC6B, EHBP1, RHOQ, HAAO, WBP1, PRKD3, FSHR, GPATCH11, RASGRP3, QPCT, VAX2, CNRIP1, FAM98A, RAB11FIP5, GFPT1, NFU1, ERLEC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 BMP10, ZNF638, EML4, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, LGALSL, MSH6, ANXA4, FOXN2, LOC339803, C2orf74, LOC339807, FIGLA, NOTO, CDKL4, PRORSD1P, LOC375196, LOC388942, TMEM247, LINC01118, TSPYL6, C2orf78, BOLA3, C2orf81, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, LTBP1, MIR216A, MIR217, EPCAM, MXD1, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, CD207, PCBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TPRKB, WDPCP, ASB3, CRIM1, PCYOX1, VPS54, DYNC2LI1, PEX13, VIT, ATP6V1B1, PIGF, BCL11A, PLEK, ETAA1, HEATR5B, AFTPH, PPM1B, C2orf42, FANCL, SRBD1, MOB1A, PPP3R1, FBXO48, NDUFAF7, NAGK, CCDC88A, PRKCE, EIF2AK2, GKN1, CYP26B1, KCNK12, PNO1, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, SLC4A5, RAB1A, REL, RPS27A, RTKN, THADA, ATL2, ABCG5, ABCG8, SRSF7, GMCL1, TTC31, LOC644838, PAPOLG, SIX3, SLC1A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC3A1, SLC8A1, SNRPG, SOS1, SPR, SPTBN1, ZFP36L2, STRN, MIR559, TGFA, TIA1, ACTG2, LOC728730, C1GALT1C1L, MORN2, MEIS1-AS3, UGP2, VRK2, XPO1, ALMS1, MOGS, OR7E91P, CAMKMT, GEMIN6, ANKRD53, FBXO11, CALM2, THUMPD2, DYSF, INO80B, WDR54, FAM161A, ANTXR1, PRADC1, DUSP11, KIAA1841, MCEE, PCGF1, CCDC142, FAM136A, MAP4K3, LBX2, PNPT1, NAT8, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, SFXN5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CRIPT, PREPL, FEZ2, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.444923305861541 363 0.0861152997281392 0.999566705190892 22271 0.442114876846127 2 1 1 -6.9774636348431 LTS-019 NA NA NA NA LTS-019 chr2 74732933 74746978 14046 * c(DQX1, TLX2, PCGF1) 0 1 NA 0.965206815103062 115 0.796465862434093 2 2 0 -5.76447914679066 LTS-019 chr2 74746979 75719511 972533 * c(MIR5000, SEMA4F, M1AP, DQX1, DOK1, HTRA2, HK2, AUP1, POLE4, TACR1, EVA1A, LOXL3) 0.40514318148054 9 0.154044636388288 1.0039394847656 791 0.225741634077152 2 1 1 -6.74741538490269 LTS-019 chr2 75719512 75719691 180 * EVA1A NA 0 NA 1.667 1 NA NA NA NA NA LTS-019 chr2 75719692 80801499 5081808 * c(SNAR-H, MIR4264, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, GCFC2, LRRTM4, EVA1A, MRPL19) 0.280008521080293 6 0.254283109938509 1.1102983477839 630 0.391765545428132 2 1 1 -6.98638273424238 LTS-019 chr2 80801500 80875611 74112 * CTNNA2 0.468 1 NA 1.15122407519172 47 0.305067270905916 2 2 0 -5.76958959758216 LTS-019 chr2 80875612 84676883 3801272 * c(CTNNA2, DHFRP3, FUNDC2P2, SUCLG1) 0.479 1 NA 1.09228206043748 66 0.318804307499423 2 2 0 -5.82358370278823 LTS-019 chr2 84676884 84686276 9393 * SUCLG1 NA 0 NA 0.8 1 NA NA NA NA NA LTS-019 chr2 84686277 87092865 2406589 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.433626722871091 52 0.0955897054069571 0.993547847298491 3077 0.23803593854386 2 1 1 -6.80438175459819 LTS-019 chr2 87092866 87092912 47 * c(ANAPC1P1, RMND5A) NA 0 NA 0.737 1 NA NA NA NA NA LTS-019 chr2 87092913 87400212 307300 * c(ANAPC1P1, LOC285074, RMND5A) 0.456 1 NA 0.714102060977269 65 0.230296278653257 1 1 0 -5.78282571058922 LTS-019 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.107 1 NA NA NA NA NA LTS-019 chr2 87404257 87424310 20054 * RMND5A NA 0 NA 0.354195976049102 62 0.311460572136779 0 NA NA -5.76928812062866 LTS-019 chr2 87424311 87426774 2464 * RMND5A 0.483656530412556 3 0.0358096821171779 0.704047260043683 48 0.27572873142517 2 1 1 -8.41337113271233 LTS-019 chr2 87929222 89161322 1232101 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.408713019480789 31 0.10373353995612 1.07033007838283 622 0.363950302287226 2 1 1 -6.74026460243913 LTS-019 chr2 89161323 89185134 23812 * character(0) 0 1 NA 1.18695319367251 9 1.47502704306659 2 2 0 -5.76452931953538 LTS-019 chr2 89185135 91944161 2759027 * LOC654342 0.38962601321625 20 0.0698536063191406 1.16100085040761 350 1.05926537931096 2 1 1 -6.82592017781346 LTS-019 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.34612325062364 8 0.310735418000588 3 NA NA -5.76456482324502 LTS-019 chr2 95537183 95542363 5181 * c(TEKT4, LOC442028) 0.28 1 NA 1.12069800409025 42 0.482263575458177 2 2 0 -5.76448995752428 LTS-019 chr2 95542364 96617209 1074846 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.322191076599304 32 0.113821149318824 1.04164227094437 788 0.537634471172117 3 2 1 -7.00766491417395 LTS-019 chr2 96617210 96619734 2525 * character(0) 0.408 1 NA 0.913144943666184 4 0.288067700376144 2 2 0 -5.76470690342425 LTS-019 chr2 96619735 111851616 15231882 * c(LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, ACTR1B, TXNDC9, ARID5A, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, COX5B, LINC01102, C2orf15, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, DUSP2, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, SULT1C4, NA NA NA NA NA NA NA NA NA LTS-019 RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1R1, INPP4A, ANKRD36, SLC9A4, AFF3, LIMS1, ASTL, SULT1C3, NPAS2, NPHP1, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, STARD7, ANKRD36B, RANBP2, SLC5A7, RPL31, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, IL1R2, MALL, PDCL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 C2orf49, UXS1, TSGA10, LMAN2L, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.433751737925316 224 0.0896074630683183 1.00706711582318 9493 0.290708941737493 2 1 1 -6.8544453435259 LTS-019 NA NA NA NA LTS-019 chr2 111851617 111886332 34716 * c(BCL2L11, ACOXL) 0.301 1 NA 1.02624675944102 36 0.27187895882905 2 2 0 -5.76444273311203 LTS-019 chr2 111886333 112754547 868215 * c(BCL2L11, MERTK, MIR4435-2HG, ANAPC1) 0.329854084039794 10 0.210986597783946 1.06402746478323 366 0.399065571562453 2 1 1 -6.82985781464487 LTS-019 chr2 112754548 112754880 333 * MERTK 0.418 1 NA 0.997133091408994 3 0.33260537177462 2 2 0 -5.76441294910658 LTS-019 chr2 112754881 118673738 5918858 * c(LOC100499194, MIR4782, ACTR3, MERTK, RABL2A, RPL23AP7, FBLN7, TTL, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, DPP10-AS1, FLJ42351, LINC01191, CCDC93, IL36G, DPP10, FAM138B, PAX8-AS1, SLC20A1, RGPD8, PAX8, SLC35F5, POLR1B, CHCHD5, ZC3H8, IL1F10, DDX11L2, TMEM87B, DDX18) 0.453278518676007 91 0.057996090559162 1.02405947182721 2683 0.303880807942933 2 1 1 -6.99824792760186 LTS-019 chr2 118673739 118673906 168 * CCDC93 0 1 NA 1.39685718471537 5 1.55473801651597 3 3 0 -5.76441013873384 LTS-019 chr2 118673907 137852726 19178820 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DARS, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, LOC389033, LINC01120, NA NA NA NA NA NA NA NA NA LTS-019 LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, TMEM185B, SAP130, MZT2B, MAP3K19, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, CCNT2, CCDC74A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CCDC74B, IMP4, HS6ST1) 0.40779421141463 173 0.120303145515025 1.02542193203753 8451 0.350322950693085 2 1 1 -6.74731435652448 LTS-019 NA NA NA NA LTS-019 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.228 1 NA NA NA NA NA LTS-019 chr2 137872656 143713944 5841289 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B, KYNU) 0.465162003370619 8 0.0202127081666107 1.14153757233716 1001 0.565407266768553 2 1 1 -9.28310108885665 LTS-019 chr2 143713945 143715164 1220 * KYNU NA 0 NA 0.746 1 NA NA NA NA NA LTS-019 chr2 143715165 148602472 4887308 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.357625862339823 3 0.262660109901244 0.955778202414298 423 0.261339644526718 2 1 1 -7.03583350060287 LTS-019 chr2 148602473 152106538 3504066 * c(LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, ORC4, MBD5, ACVR2A) 0.474433021290633 10 0.0255942701921087 1.06861757027364 1056 0.224052316560962 2 1 1 -8.9986713049955 LTS-019 chr2 152106539 153550026 1443488 * c(MIR4773-1, MIR4773-2, STAM2, FMNL2, ARL5A, RBM43, NEB, RIF1, PRPF40A, TNFAIP6, CACNB4, NMI) 0.371068564786684 30 0.0430161824668692 1.41228629647261 2114 0.335734369108703 3 2 1 -6.75422762171028 LTS-019 chr2 153550027 165539374 11989348 * c(TANK, LOC100144595, LY75-CD302, MIR4785, PSMD14, TBR1, GALNT5, GALNT13, ACVR1C, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, GCG, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, KCNJ3, LY75, NR4A2, FIGN, CCDC148-AS1, PRPF40A, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, PKP4, TANC1, ACVR1, KCNH7, DAPL1, CYTIP, CD302) 0.417666082121104 45 0.141974969340345 1.03347391191548 4242 0.261715104133514 2 1 1 -6.73482427708132 LTS-019 chr2 165539375 165542581 3207 * COBLL1 NA 0 NA 1.55216111593975 63 0.476688550731357 3 NA NA -5.76448733910166 LTS-019 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.14 1 NA NA NA NA NA LTS-019 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.443469326658809 53 0.0941651114521937 1.06659364056106 3399 0.371197776210432 2 1 1 -6.80605647307688 LTS-019 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.939 1 NA NA NA NA NA LTS-019 chr2 170366321 171914592 1548272 * c(NA, PHOSPHO2-KLHL23, KLHL41, CCDC173, UBR3, MYO3B, KLHL23, GAD1, GORASP2, METTL5, SP5, LINC01124, PHOSPHO2, SSB, FASTKD1, PPIG, TLK1) 0.427071374870363 26 0.126677761997185 0.996753239494752 1634 0.237476898450128 2 1 1 -6.7652057838155 LTS-019 chr2 171914593 172016756 102164 * TLK1 0.409 1 NA 0.930776599661944 47 0.178979905745029 2 2 0 -5.78681138267816 LTS-019 chr2 172016757 183387104 11370348 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, HOXD-AS2, TTN-AS1, MIR4437, UBE2E3, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, ZNF385B, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, CCDC141, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, HAGLR, MIR10B, NEUROD1, NFE2L2, DFNB59, NA NA NA NA NA NA NA NA NA LTS-019 PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, CWC22, PLEKHA3, SP3, SSFA2, TTN, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, CIR1, TLK1) 0.44605357605211 121 0.0728487772897876 1.01999756717825 9087 0.23964312557034 2 1 1 -6.87816421328902 LTS-019 NA NA NA NA LTS-019 chr2 183387105 190728981 7341877 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, FRZB, SLC40A1, ITGAV, FSIP2, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.458717613278199 71 0.035407583677672 1.08620037104002 3409 0.353790037924699 2 1 1 -7.62595965082026 LTS-019 chr2 190728982 190732521 3540 * PMS1 NA 0 NA 0.906 1 NA NA NA NA NA LTS-019 chr2 190732522 202965222 12232701 * c(LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, PLCL1, PMS1, PPIL3, MFSD6, STRADB, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, NA NA NA NA NA NA NA NA NA LTS-019 TRAK2, BOLL, STAT1, STAT4, C2orf47, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.435061659297809 119 0.101776359887696 0.9703206316834 7083 0.279180908682056 2 1 1 -7.15095445444586 LTS-019 NA NA NA NA LTS-019 chr2 202965223 203072700 107478 * c(KIAA2012, SUMO1) 0 1 NA 0.950195958245438 117 0.790248940900375 2 2 0 -5.7652051688694 LTS-019 chr2 203072701 203776545 703845 * c(SNORD11B, ICA1L, FAM117B, NOP58, WDR12, BMPR2, SNORD11, SNORD70, SUMO1) 0.42754574979287 7 0.175538219959833 0.972208070176846 697 0.217560117055921 2 1 1 -6.77370739675534 LTS-019 chr2 203776546 204305759 529214 * c(ABI2, WDR12, CYP20A1, RAPH1, NBEAL1, CARF) 0 2 0 1.03295650763783 888 0.273742632513162 0 0 0 -Inf LTS-019 chr2 204305760 204821494 515735 * c(CTLA4, ICOS, RAPH1, CD28) 0.484 1 NA 0.969104183447572 189 0.215853737207076 2 2 0 -5.79500588833991 LTS-019 chr2 204821495 216300398 11478904 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NDUFS1, INO80D, NA NA NA NA NA NA NA NA NA LTS-019 PTH2R, ZDBF2, BARD1, RPE, SNORA41, FZD5, SPAG16, KLF7, ADAM23, NRP2) 0.448778808881039 110 0.0585695376649435 1.03867939238831 6099 0.318454925778438 2 1 1 -6.93361928323592 LTS-019 NA NA NA NA LTS-019 chr2 216300399 216300482 84 * FN1 0.443 1 NA 0.136 1 NA NA NA NA NA LTS-019 chr2 216300483 220197388 3896906 * c(LOC100129175, MIR3131, ABCB6, ARPC2, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, FN1, CFAP65, PNKD, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, NA NA NA NA NA NA NA NA NA LTS-019 XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.432601579562252 108 0.118826695915383 0.976303623893139 5025 0.377470626226317 2 1 1 -6.80690683542147 LTS-019 NA NA NA NA LTS-019 chr2 220197389 220197424 36 * RESP18 0.383 1 NA 0.798 1 NA NA NA NA NA LTS-019 chr2 220197425 220330976 133552 * c(SPEG, DES, DNPEP, RESP18) 0.322334037800183 9 0.226933972286605 1.00511961468141 265 0.253882366299173 2 1 1 -6.83132574196947 LTS-019 chr2 220330977 220336723 5747 * SPEG 0.447 1 NA 1.09658680744283 39 0.172871181358055 2 2 0 -5.76476595741301 LTS-019 chr2 220336724 227662171 7325448 * c(MIR4268, MIR3132, FARSB, MIR4439, MIR5702, SPEG, STK11IP, MOGAT1, AP1S3, SGPP2, TMEM198, CCDC140, EPHA4, ACSL3, OBSL1, KCNE4, GMPPA, INHA, IRS1, PAX3, SERPINE2, ASIC4, DOCK10, WDFY1, NYAP2, LOC646736, SLC4A3, MRPL44, SCG2, CHPF, FAM124B, CUL3) 0.450949766836609 54 0.0406862902442147 1.00414952757138 2798 0.252369574031984 2 1 1 -7.25517492657729 LTS-019 chr2 227662172 227924182 262011 * c(COL4A4, IRS1, RHBDD1) 0.42 1 NA 1.01788393098609 397 0.271247814398603 2 2 0 -5.7651763546585 LTS-019 chr2 227924183 228384825 460643 * c(MIR5703, COL4A3, COL4A4, AGFG1, MFF, LOC654841, TM4SF20) 0.365056583893365 8 0.212212452509272 0.970906065286006 643 0.345865634399502 2 1 1 -6.77533460688396 LTS-019 chr2 228384826 228388444 3619 * AGFG1 NA 0 NA 1.319 1 NA NA NA NA NA LTS-019 chr2 228388445 229035354 646910 * c(DAW1, AGFG1, C2orf83, CCL20, SPHKAP, SLC19A3) 0.409439311862609 15 0.192822074413052 1.12114472470812 538 0.766468572494813 2 1 1 -6.7374036124023 LTS-019 chr2 229035355 229035356 2 * SPHKAP 0.5 1 NA 0.205 1 NA NA NA NA NA LTS-019 chr2 229035357 233680507 4645151 * c(MIR1471, MIR4777, NMUR1, SP140, CHRND, CHRNG, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, SNORD82, GIGYF2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, KCNJ13, NCL, NPPC, PDE6D, CAB39, PID1, PSMD1, PTMA, SNORD20, PRSS56, COPS7B, SNORA75, SP100, ARMC9, EFHD1, SPHKAP, ITM2C, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.402143310029222 81 0.142970286345722 0.978768812875532 3429 0.261081740264638 2 1 1 -6.87244997800538 LTS-019 chr2 233680508 233708806 28299 * GIGYF2 0.489 1 NA 0.997195446779647 27 0.240749813986372 2 2 0 -5.76486651907564 LTS-019 chr2 233708807 234066969 358163 * c(NGEF, GIGYF2, INPP5D, C2orf82, NEU2) 0.465179060101822 17 0.0254409639569499 0.975360172188706 337 0.235431813134337 2 1 1 -8.50831162151831 LTS-019 chr2 234066970 234091158 24189 * INPP5D 0.065 1 NA 0.927914516000559 44 0.174666326409515 2 2 0 -5.77031617590973 LTS-019 chr2 234091159 234379086 287928 * c(INPP5D, ATG16L1, SAG, SCARNA6, SCARNA5, DGKD) 0.362543998138459 8 0.189143747300452 0.958120135088629 469 0.228930491021117 2 1 1 -6.79844030600486 LTS-019 chr2 234379087 234379522 436 * DGKD 0.472 1 NA 0.964863580827225 11 0.0887017474461467 2 2 0 -5.76458416739926 LTS-019 chr2 234379523 242757597 8378075 * c(PP14571, LOC100286922, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NDUFA10, NA NA NA NA NA NA NA NA NA LTS-019 SEPT2, ANO7, PRLH, THAP4, ANKMY1, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, PPP1R7, USP40, HJURP, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, SPP2, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, DGKD, PER2, LRRFIP1, HDAC4, FARP2) 0.441411015422143 278 0.0891642880566805 0.979865976428051 7900 0.326993663024688 2 1 1 -6.93679471393573 LTS-019 NA NA NA NA LTS-019 chr2 242757598 243037214 279617 * c(NEU4, RTP5, PDCD1, LOC728323) NA 0 NA 0.966024992239468 169 0.188901197561381 2 NA NA -5.78816996915873 LTS-019 chr3 239351 425514 186164 * CHL1 0 1 NA 1.53950641751933 85 0.282898249071519 3 3 0 -5.77503136001243 LTS-019 chr3 425515 2861331 2435817 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6) 0.392954945057146 4 0.0164215305823381 1.52716406577172 288 0.27703786404409 4 2 2 -8.03863077154879 LTS-019 chr3 2861332 15062428 12201097 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, NA NA NA NA NA NA NA NA NA LTS-019 ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, SETMAR, MTMR14, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.352651662700968 195 0.0892539430471175 1.37977978697218 8271 0.364547859842753 3 2 1 -6.76812526108129 LTS-019 NA NA NA NA LTS-019 chr3 15062429 16679606 1617178 * c(MIR4270, SH3BP5-AS1, GALNT15, METTL6, DAZL, RFTN1, ANKRD28, CAPN7, HACL1, DPH3, COL6A4P1, RBSN, MRPS25, BTD, MIR563, NR2C2, COLQ, EAF1, OXNAD1, SH3BP5) 0.353827032771566 45 0.106326256057818 1.29026050496309 1720 0.380495516505188 3 2 1 -6.79044400570432 LTS-019 chr3 16679607 17202706 523100 * c(MIR3714, PLCL2, TBC1D5) 0.413 1 NA 1.33369062254448 181 0.223366940656005 3 3 0 -5.78421242674129 LTS-019 chr3 17202707 18462908 1260202 * c(LOC339862, SATB1, TBC1D5) 0.402691207848731 2 0.0445477272147525 1.29390179209338 305 0.23483327764955 3 2 1 -7.27656075703183 LTS-019 chr3 18462909 18951441 488533 * SATB1 NA 0 NA 0.88 1 NA NA NA NA NA LTS-019 chr3 18951442 42589955 23638514 * c(ACVR2B-AS1, PDCD6IP, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, LRRC3B, CCR4, CCR8, KCNH8, LYZL4, TRIM71, CTNNB1, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CX3CR1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, SUSD5, GLB1, RBMS3, GOLGA4, NKIRAS1, ENTPD3-AS1, ZNF619, ZNF621, LINC00692, NA NA NA NA NA NA NA NA NA LTS-019 ACAA1, C3orf35, GADL1, ZNF860, ITGA9, VENTXP7, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, SLC25A38, ULK4, OXSM, NGLY1, SNORA6, WDR48, RAB5A, RARB, SNORA62, RPL15, SCN5A, SCN10A, AZI2, TMPPE, THRB-AS1, LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, THRB, TOP2B, UBE2E1, UBE2E2, UBP1, VIPR1, ZNF385D, EOMES, DCLK3, CCK, KAT2B, RPL14, SEC22C, LRRFIP2, ACVR2B, SLC22A14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC22A13, SLC4A7, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.441406500620865 156 0.0775375316682463 1.03059426190331 10338 0.408432246079946 2 1 1 -6.80883532401135 LTS-019 NA NA NA NA LTS-019 chr3 42589956 42590061 106 * SEC22C NA 0 NA 0.799 1 NA NA NA NA NA LTS-019 chr3 42590062 57011234 14421173 * c(SNORD19B, LINC00696, NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, PARP3, MIR4271, MIR3938, KRBOX1, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, SNRK-AS1, CCDC13-AS1, ARHGEF3-AS1, CACNA2D3-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CXCR6, CSPG5, CCR9, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, ZNF501, NA NA NA NA NA NA NA NA NA LTS-019 GPR62, CCR1, CCR3, CCR5, ACKR2, COL7A1, KLHL40, TMEM42, IQCF1, GLYCTK, PPM1M, LSMEM2, CCDC12, CCDC13, CYP8B1, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, RAD54L2, STAB1, NBEAL2, FAM208A, KLHL18, LARS2, NAT6, ABHD14A, POC1A, TMEM158, NDUFAF3, ALS2CL, TMIE, PTPN23, DNAH1, HIGD1A, ERC2, GNL3, AMT, GNAI2, GNAT1, XCR1, FBXW12, CCDC66, TCAIM, ZNF660, KIF9-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, ZNF445, IMPDH2, ITIH1, ITIH3, ITIH4, TOPAZ1, C3orf62, TMEM110, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, LTF, MIRLET7G, MIR135A1, MIR138-1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYL3, NKTR, MIR425, ARHGEF3, ABHD5, C3orf18, SS18L2, SHISA5, ZDHHC3, ZMYND10, TEX264, TMA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, LZTFL1, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, ANO10, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, ZKSCAN7, SEMA3G, KIF15, PCBP4, LRTM1, PTH1R, KIAA1143, HHATL, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CDCP1, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, MIR564, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TCTA, TDGF1, TGM4, TKT, ERC2-IT1, CLEC3B, TNNC1, FAM198A, CCR2, UBA7, USP4, UQCRC1, WNT5A, ZNF35, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, ESRG, LRRC2, FYCO1, CCDC51, WDR82, CAMP, BAP1, RTP3, LRRC2-AS1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, POMGNT2, HYAL2, BSN, LIMD1, UCN2, CCRL2, SEC22C, RRP9, ZNF502, RFT1, CACNA2D2, ZBTB47, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.438777804650056 350 0.103720565157121 1.00355531466846 21934 0.261094245368705 2 1 1 -6.90218452391041 LTS-019 NA NA NA NA LTS-019 chr3 57011235 57128211 116977 * c(SPATA12, ARHGEF3, IL17RD) 0.49 1 NA 0.989429849519643 135 0.24584119980668 2 2 0 -5.76700608669053 LTS-019 chr3 57128212 57885926 757715 * c(ASB14, DNAH12, PDE12, DENND6A, APPL1, ARF4, IL17RD, SLMAP, HESX1) 0.263244767147389 9 0.231546431628734 1.01001111011569 1147 0.273041253004948 2 2 0 -6.90187873402227 LTS-019 chr3 57885927 57887796 1870 * SLMAP 0.497 1 NA 0.898371640713015 33 0.18750232321793 2 2 0 -5.76506996337568 LTS-019 chr3 57887797 58572813 685017 * c(RPP14, FAM107A, DNASE1L3, KCTD6, FLNB, PDHB, PXK, ABHD6, SLMAP, ACOX2) 0.431649272107409 32 0.116883437249363 1.0063802655458 1024 0.271986389551382 2 1 1 -6.75124238793767 LTS-019 chr3 58572814 71247585 12674772 * c(LINC00994, MIR3136, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, ARL6IP5, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, FAM19A4, PRICKLE2, C3orf67, FHIT, FRMD4B, LRIG1, FOXP1, EOGT, LINC00698, FAM19A1, MITF, FEZF2, LMOD3, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, TMF1, THOC7, KBTBD8, CADPS, SUCLG2, UBA3, MAGI1, PSMD6) 0.447340302133564 61 0.0675391244637753 1.06763413705498 3734 0.283050488568746 2 1 1 -6.95049343768646 LTS-019 chr3 71247586 71591038 343453 * FOXP1 NA 0 NA 1.308 1 NA NA NA NA NA LTS-019 chr3 71591039 72496000 904962 * c(MIR1284, LINC00870, RYBP, FOXP1, GPR27, EIF4E3, PROK2) 0.345 1 NA 1.43518673725523 333 0.346450712257508 3 3 0 -5.76573979933038 LTS-019 chr3 72496001 74312218 1816218 * c(PPP4R2, PDZRN3, CNTN3, EBLN2, SHQ1, GXYLT2) 0.439914038586237 15 0.1224866173448 1.05274488090391 483 0.287056650694996 2 1 1 -6.76192329954721 LTS-019 chr3 74312219 74312594 376 * CNTN3 0 1 NA 1.59871868920032 9 0.817965311000412 4 4 0 -5.76441418791353 LTS-019 chr3 74312595 74570331 257737 * CNTN3 0.459461171520092 3 0.0208806130178211 1.12414423510256 132 0.190778530102313 2 1 1 -8.73834149455388 LTS-019 chr3 75263493 75786521 523029 * c(ZNF717, MIR1324, FAM86DP) 0.317899587394097 117 0.093358287367636 1.56184753406534 247 0.793294749526355 4 3 1 -6.79278539037569 LTS-019 chr3 75786522 75786527 6 * ZNF717 NA 0 NA 1.069 1 NA NA NA NA NA LTS-019 chr3 75786528 75986622 200095 * ZNF717 0.332535708389762 63 0.0860673833112526 1.24715510898987 129 0.579543947336507 3 2 1 -6.81256129886414 LTS-019 chr3 75986623 75986663 41 * ROBO2 0.424 1 NA 1.015 1 NA NA NA NA NA LTS-019 chr3 75986664 89530956 13544293 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.452451539002626 46 0.0286267754127391 1.07254548199024 1624 0.259012126839871 2 1 1 -7.77484217027671 LTS-019 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.11732213844147 31 0.398456522094946 2 NA NA -5.78006035459282 LTS-019 chr3 93591838 93768268 176431 * c(ARL13B, STX19, PROS1) 0.447 1 NA 1.03763324839795 161 0.231590991669279 2 2 0 -5.76441028763984 LTS-019 chr3 93768269 97591153 3822885 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, LINC00879, EPHA6, NSUN3, ARL6) 0.286273197206688 9 0.173289818255751 1.07025403552238 468 0.322883307162934 2 1 1 -7.065468137124 LTS-019 chr3 97591154 97593485 2332 * CRYBG3 0.478 1 NA 0.95420802072808 49 0.103085745466419 2 2 0 -5.76532845337719 LTS-019 chr3 97593486 98620438 1026953 * c(ST3GAL6-AS1, ST3GAL6, CRYBG3, DCBLD2, CPOX, GABRR3, OR5K1, OR5H1, GPR15, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2, MINA) 0.469882846276627 32 0.0270035653261302 1.00255719777444 936 0.303847790290287 2 1 1 -8.57959672902811 LTS-019 chr3 98620439 100015146 1394708 * c(MIR548G, MIR3921, FILIP1L, COL8A1, DCBLD2, TBC1D23, TMEM30CP, CMSS1) 0.4 1 NA 1.30697976780394 341 0.243012498125712 3 3 0 -5.84606422226159 LTS-019 chr3 100015147 100042849 27703 * TBC1D23 0.314 1 NA 1.38734243755306 59 0.792004012942268 3 3 0 -5.76441757660264 LTS-019 chr3 100042850 101488439 1445590 * c(ZBTB11-AS1, TFG, FAM172BP, ABI3BP, ZBTB11, PDCL3P4, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, NIT2, PCNP, SENP7, RPL24, CEP97, ADGRG7, TOMM70) 0.34146786304739 33 0.11117546873517 1.37739529947166 1573 0.38820872151891 3 2 1 -6.75869167031125 LTS-019 chr3 101488440 103243064 1754625 * c(ZPLD1, LOC152225, NFKBIZ, NXPE3) NA 0 NA 1.38729932883716 307 0.369220959369927 3 NA NA -5.76658630984802 LTS-019 chr3 105085707 105260520 174814 * ALCAM 0.436 1 NA 1.05360952436754 53 0.195598671642552 2 2 0 -5.76507364637079 LTS-019 chr3 105260521 130107936 24847416 * c(FAM86JP, LOC100129550, ZBTB20-AS1, MIR548I1, LINC00882, PVRL3-AS1, IGSF11-AS1, MYLK-AS1, TMCC1-AS1, ISY1-RAB43, MIR4796, MIR4446, COX17, MIR5002, MIR5092, ALDH1L1-AS2, CFAP44-AS1, ALDH1L1-AS1, CD96, POLQ, ALDH1L1, PDIA5, ADCY5, HHLA2, FSTL1, MGLL, TXNRD3, OSBPL11, LRRC58, CCDC58, CD200R1, TPRA1, UROC1, RPL32P3, H1FOO, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, ROPN1B, C3orf22, SPICE1, IGSF11, C3orf30, NA NA NA NA NA NA NA NA NA LTS-019 PARP15, DNAJB8, GPR156, CHST13, KBTBD12, DRD3, ALG1L, HACD2, TIGIT, USF3, ALCAM, COPG1, MYH15, TMCC1, PLXND1, LINC01565, ZDHHC23, NUP210P1, COL6A5, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, GATA2, FAM162A, SEC22A, MORC1, GOLGB1, GP9, TUSC7, LINC00636, DNAJB8-AS1, RABL3, SLC9C1, ILDR1, ACAD9, KLF15, GTPBP8, TAGLN3, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, RAB43, H1FX-AS1, DUBR, TMPRSS7, CD200R1L, CFAP100, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ITGB5, KPNA1, FLJ22763, LINC01205, LSAMP, MIR198, MCM2, CD200, MYLK, NDUFB4, ARGFX, PODXL2, TRAT1, TIMMDC1, PLA1A, FBXO40, ATP6V1A, PLXNA1, SEMA5B, WDR5B, PARP14, GRAMD1C, ROPN1, SIDT1, SLC41A3, SLC35A5, IFT57, DPPA4, TMEM39A, ABHD10, IFT122, CFAP44, EAF2, MUC13, HMCES, POGLUT1, BBX, ISY1, HEG1, KIAA1257, ARHGAP31, CCDC191, KIAA1524, RHO, EEFSEC, RPN1, POPDC2, ATG3, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LOC653712, SLC15A2, LINC00488, SNORA7B, MIR567, MIR568, TRH, FAM86HP, UPK1B, UMPS, CNBP, ZNF80, ZNF148, RAB7A, ZXDC, ZBED2, HSPBAP1, C3orf52, QTRT2, EFCC1, NAA50, ABTB1, PARP9, CHCHD6, SLC12A8, CASR, RETNLB, CCDC54, DIRC2, RUVBL1, CBLB, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, PHLDB2, LOC90246, EFCAB12, BOC, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3) 0.435145024376201 390 0.0986008454093774 1.01999390306756 17389 0.381392831562961 2 1 1 -6.78861851974904 LTS-019 NA NA NA NA LTS-019 chr3 130107937 134967368 4859432 * c(NPHP3-ACAD11, MIR4788, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, EPHB1, DNAJC13, COL6A5, ANAPC13, NPHP3, ATP2C1, ASTE1, PIK3R4, KY, LOC339874, NPHP3-AS1, AMOTL2, ACKR4, RAB6B, ACPP, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, SNORA58, TF, NEK11, UBA5, C3orf36, CEP63, ACAD11, BFSP2) 0.411444184968673 51 0.119113266247209 1.07041814450157 3504 0.252381142717368 2 1 1 -6.77814096572899 LTS-019 chr3 134967369 136052489 1085121 * c(EPHB1, PCCB, MSL2, PPP2R3A) 0 1 NA 1.0293544501898 423 0.288531674960757 2 2 0 -5.76487766093307 LTS-019 chr3 136052490 136221541 169052 * c(STAG1, PCCB) NA 0 NA 1.03592200675377 196 0.199727400500601 2 NA NA -5.76441492185183 LTS-019 chr3 136221542 140685827 4464286 * c(STAG1, PISRT1, DZIP1L, MRAS, ARMC8, TRIM42, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, A4GNT, DBR1, CLDN18, PIK3CB, IL20RB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, SLC35G2, ESYT3, SOX14, COPB2) 0.333731672153046 32 0.1150247825681 1.45318644444433 2336 0.383321550711371 3 2 1 -6.78749108998447 LTS-019 chr3 140685828 142171514 1485687 * c(GRK7, ZBTB38, GK5, ATP1B3, XRN1, ATR, SLC25A36, RASA2, TFDP2, SPSB4, PXYLP1, RNF7) 0.3109969322829 19 0.162439930417838 1.36399656639862 1449 0.371607382245092 3 2 1 -6.80116736755391 LTS-019 chr3 142171515 142413407 241893 * c(PLS1, ATR) 0.434 1 NA 1.36007706995713 279 0.237038261440774 3 3 0 -5.76786969739363 LTS-019 chr3 142413408 158263513 15850106 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, LOC100507389, ARHGEF26-AS1, LOC100507537, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, CP, CPA3, CPB1, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, GPR171, GYG1, LINC00880, AADACL2, GPR149, PAQR9, PLSCR5, ANKUB1, NA NA NA NA NA NA NA NA NA LTS-019 LEKR1, MBNL1-AS1, TM4SF1, MBNL1, MME, P2RY1, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, SUCNR1, CCNL1, PLSCR2, PLSCR4, PTX3, RAP2B, TMEM14EP, LOC646903, PA2G4P4, SHOX2, SIAH2, P2RY12, HLTF, SSR3, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, EIF2A, ZIC4, HPS3, GMPS, SLC33A1, CHST2, TSC22D2, P2RY14) 0.357351727910056 105 0.0808917956330097 1.37997206161949 6596 0.35876130343831 3 2 1 -6.77174833968372 LTS-019 NA NA NA NA LTS-019 chr3 158263514 158288840 25327 * character(0) NA 0 NA 1.793 1 NA NA NA NA NA LTS-019 chr3 158288841 161090563 2801723 * c(MIR3919, IQCJ-SCHIP1, SMC4, PPM1L, SPTSSB, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, MLF1, NMD3, LXN, IFT80, RARRES1, MFSD1, IQCJ, SCARNA7, ARL14, GFM1, B3GALNT1) 0.425025932276445 26 0.128552341928821 1.78668891245669 1885 0.478516837328023 4 2 2 -6.73717904813488 LTS-019 chr3 161090564 161147320 56757 * LOC101243545 NA 0 NA 1.373 1 NA NA NA NA NA LTS-019 chr3 161147321 169487206 8339886 * c(LOC101243545, PDCD10, OTOL1, WDR49, MECOM, SLITRK3, GOLIM4, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, MIR551B, TERC, ZBBX, ACTRT3, EGFEM1P) 0.361266190397643 16 0.0495425742838083 1.49002601291229 1172 0.327752026506287 3 2 1 -6.86970896129965 LTS-019 chr3 169487207 195306436 25819230 * c(MIR944, DPPA2P3, LOC100128164, LINC00887, LOC100131635, SNAR-I, MIR1224, LINC00578, LINC00888, TMEM44-AS1, LOC100507391, ABCC5, MIR4789, MIR5692C1, NAALADL2-AS3, OPA1-AS1, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, LINC01014, XXYLT1-AS2, ALG3, KCNMB2, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, TTC14, LRRC34, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, HTR3C, DVL3, NA NA NA NA NA NA NA NA NA LTS-019 ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, EPHB3, ETV5, FGF12, NLGN1, TNIK, MCF2L2, ATP11B, VPS8, ACAP2, LOC253573, NAALADL2, UTS2B, GHSR, GPR160, FETUB, LAMP3, KCNMB3, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, CCDC39, EHHADH-AS1, LPP-AS2, LRRIQ4, SAMD7, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, SOX2-OT, IL1RAP, KNG1, TMEM212, FLJ46066, FLJ42393, LINC00884, LPP, NDUFB5, OPA1, CLDN11, ZNF639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PEX5L, DNAJB11, PIK3CA, PLD1, DCUN1D1, POLR2H, KLHL24, PPP1R2, TBCCD1, P3H2, ABCF3, LSG1, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, MCCC1, PSMD2, HRASLS, MRPL47, NCEH1, SLC7A14, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, GMNC, LOC647323, FNDC3B, ST6GAL1, SKIL, SLC2A2, SOX2, SST, SNORA81, SNORD66, MIR569, THPO, SEC62, ATP13A3, TBL1XR1, LRRC31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ATP13A4, ACTRT3, MGC2889, ACTL6A, TP63, CHRD, TNFSF10, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ, CAMK2N2, ECE2) 0.354793777481997 263 0.0762485715140933 1.40043894503923 15038 0.484308801965948 3 2 1 -6.74350021569068 LTS-019 NA NA NA NA LTS-019 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.18 1 NA NA NA NA NA LTS-019 chr3 195345046 195477791 132746 * c(MUC20, MUC4, MIR570, SDHAP2) 0.338650375056796 25 0.0838414575254987 1.8942868686572 198 1.80709569728608 6 4 2 -6.74524019958981 LTS-019 chr3 195477792 195477880 89 * MUC4 NA 0 NA 1.087 1 NA NA NA NA NA LTS-019 chr3 195477881 197770405 2292525 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.33173399633049 96 0.0985736427664394 1.33461414909539 3207 0.403737657484697 3 2 1 -6.8185691531237 LTS-019 chr3 197770406 197770512 107 * LMLN NA 0 NA 1.52893272641291 5 0.135207248326412 3 NA NA -5.76443263540723 LTS-019 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.264 1 NA 1.2455250035182 14 0.441578885464321 3 3 0 -5.76475216195079 LTS-019 chr4 60336 2746288 2685953 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, TMEM129) 0.3477077752492 122 0.0867963545723583 1.32449057447559 4264 0.372919630417659 3 2 1 -6.79734422958948 LTS-019 chr4 2746289 22456431 19710143 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, HTT-AS, MIR5091, MIR548AX, LINC01587, MFSD10, C1QTNF7, MRFAP1L1, CLNK, ADD1, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, LCORL, CCDC96, BOD1L1, NA NA NA NA NA NA NA NA NA LTS-019 FBXL5, NSG1, FAM184B, GPR78, LOC285484, DOK7, LINC00955, LINC01097, LINC01096, FAM200B, GRK4, HTT, HGFAC, HMX1, NOP14-AS1, MSANTD1, FAM86EP, KCNIP4-IT1, USP17L6P, USP17L9P, LRPAP1, MIR218-1, CPEB2-AS1, MSX1, LAP3, STX18, CYTL1, SH3TC1, DCAF16, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, NKX3-2, QDPR, RGS12, AFAP1, S100P, NCAPG, DEFB131, CLRN2, SH3BP2, LOC650293, BST1, MIR572, USP17L24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, TNIP2, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, NOP14, PROM1, LDB2, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.350927262709183 335 0.0846137715666045 1.39637020137755 9366 0.404594443330233 3 2 1 -6.75277403749288 LTS-019 NA NA NA NA LTS-019 chr4 22456432 22820455 364024 * c(ADGRA3, GBA3) NA 0 NA 1.42780308848714 86 0.335308309441178 3 NA NA -5.7646893149572 LTS-019 chr4 22820456 23794036 973581 * c(PPARGC1A, GBA3) 0.45 1 NA 1.02655592654597 13 0.127727273556811 2 2 0 -5.76832108965932 LTS-019 chr4 23794037 49019346 25225310 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, SLC34A2, CORIN, PTTG2, PPARGC1A, LIAS, ARAP2, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, DHX15, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, NA NA NA NA NA NA NA NA NA LTS-019 PCDH7, KLHL5, SEPSECS, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, ATP10D, NWD2, SLAIN2, STIM2, WDR19, RFC1, GUF1, RPL9, SOD3, MIR573, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1) 0.440750367190861 212 0.0735670033016376 1.02076384114933 9529 0.266929054697995 2 1 1 -6.86396964672591 LTS-019 NA NA NA NA LTS-019 chr4 49019347 49064107 44761 * CWH43 NA 0 NA 1.04298074192066 39 0.164101360171866 2 NA NA -5.76443941723878 LTS-019 chr4 52709193 52714511 5319 * DCUN1D4 0.458 1 NA 1.06539066377133 17 0.187820432077776 2 2 0 -5.76447450735121 LTS-019 chr4 52714512 62775388 10060877 * c(ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, DCUN1D4, ADGRL3, IGFBP7-AS1, CHIC2, LRRC66, IGFBP7, KDR, KIT, RPL21P44, PDGFRA, POLR2B, PPAT, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, CLOCK, CEP135) 0.450691458998224 67 0.0702125222543719 1.03718962041676 3366 0.270126650775635 2 1 1 -6.88961597417473 LTS-019 chr4 62775389 62778369 2981 * ADGRL3 NA 0 NA 1.298 1 NA NA NA NA NA LTS-019 chr4 62778370 62861964 83595 * ADGRL3 0.457453744527539 6 0.0215352424334314 1.19098394197461 40 0.246128899677405 2 1 1 -8.51421429319398 LTS-019 chr4 62861965 65275197 2413233 * c(ADGRL3, TECRL) NA 0 NA 1.20100592907142 201 0.297637640888433 2 NA NA -6.09614429834925 LTS-019 chr4 66185251 66467555 282305 * EPHA5 0.201 1 NA 0.704221243293401 199 0.141350489260462 1 1 0 -5.79373730555431 LTS-019 chr4 66467556 68906584 2439029 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.263946398593049 8 0.0471893980223767 0.662412676535668 746 0.171672165714371 1 1 0 -7.23216546174977 LTS-019 chr4 68906585 68907453 869 * UBA6-AS1 0 1 NA 0.244416223480387 40 0.809750572549097 0 0 0 -5.76443379126665 LTS-019 chr4 68907454 68907460 7 * UBA6-AS1 NA 0 NA 0.667 1 NA NA NA NA NA LTS-019 chr4 68907461 69363240 455780 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.230817575359482 11 0.0374275056852335 0.685843393175758 403 0.166810654307005 1 1 0 -6.80199722964322 LTS-019 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.304662333269203 39 0.074889932729917 0 NA NA -5.78169733560624 LTS-019 chr4 69434317 69512310 77994 * character(0) NA 0 NA 1.768 1 NA NA NA NA NA LTS-019 chr4 69512311 76405018 6892708 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CSN1S1, CSN2, CSN3, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, AREG, PRR27, AMTN, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, UGT2B28, PPBP, ODAM, UTP3, UGT2A2, OPRPN, CXCL6, CXCL5, STATH, SULT1E1, BTC, LOC728040, NA NA NA NA NA NA NA NA NA LTS-019 UGT2B4, UGT2B7, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.203895982361534 46 0.0727670527186079 0.695208503726561 3592 0.213441526745856 1 1 0 -6.94580136959963 LTS-019 NA NA NA NA LTS-019 chr4 76405019 85564311 9159293 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, PAQR3, THAP6, C4orf26, RASGEF1B, FGF5, SEC31A, CNOT6L, C4orf22, RCHY1, GK2, NAAA, COQ2, ANXA3, HNRNPD, CCDC158, SOWAHB, CXCL10, ART3, CXCL9, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, PLAC8, NUP54, PPEF2, SDAD1, BMP2K, SEPT11, PRKG2, PRDM8, SHROOM3, ENOPH1, CXCL11, MRPL1, NA NA NA NA NA NA NA NA NA LTS-019 BMP3, MIR575, THAP9, SCD5, FRAS1, FAM175A, NAA11, GPAT3, USO1, STBD1, CDKL2, CCNG2, SCARB2, G3BP2, HNRNPDL) 0.222014900041505 112 0.0627282114130357 0.657142900691696 5940 0.167775465977245 1 1 0 -6.75472232324334 LTS-019 NA NA NA NA LTS-019 chr4 85564312 85566289 1978 * CDS1 NA 0 NA 1.145 1 NA NA NA NA NA LTS-019 chr4 85566290 85572278 5989 * CDS1 0.157606749647351 3 0.0242693221990232 1.08814881117917 63 0.268100464734749 8 7 1 -6.79412357879388 LTS-019 chr4 85572279 85572374 96 * CDS1 0.194 1 NA 0.433 1 NA NA NA NA NA LTS-019 chr4 85572375 90875677 5303303 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, C4orf36, PPM1K, TIGD2, DMP1, DSPP, MMRN1, WDFY3, NAP1L5, FAM13A-AS1, GPRIN3, IBSP, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, MEPE, KLHL8, PTPN13, SNCA-AS1, SNCA, SPP1, ARHGAP24, SPARCL1, HERC3, ABCG2) 0.242865127225767 68 0.0488934692418522 0.672951470013208 3412 0.25602821459707 1 1 0 -6.88083137287194 LTS-019 chr4 90875678 98109018 7233341 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.213874484195116 44 0.0507348275573371 0.732899563099206 1377 0.228402481345874 1 1 0 -7.45898438838755 LTS-019 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.641 1 NA NA NA NA NA LTS-019 chr4 98480011 155456833 56976823 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3140, MIR3684, LINC01095, LOC100507053, GIMD1, SEC24B-AS1, MIR4799, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, CENPE, RRH, PLK4, PRDM5, LSM6, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, ZNF827, SH3D19, NA NA NA NA NA NA NA NA NA LTS-019 MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SGMS2, SYNPO2, EDNRA, EGF, EIF4E, ELF2, TIGD4, TMEM154, ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ARFIP1, ZNF330, LINC01091, RPL34-AS1, RNF175, STPG2, ANK2, GYPA, GYPB, GYPE, H2AFZ, ANXA2P1, HADH, ANXA5, CFI, PRSS48, LRIT3, IL2, PCNAP1, IL15, LINC01061, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 C4orf3, MAD2L1, SMAD1, MANBA, MGST2, NR3C2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, GATB, PITX2, PLRG1, EXOSC9, GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, TET2, DCHS2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, FBXW7, PPP3CA, ZGRF1, AP1AR, MAML3, TMEM184C, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, ABCE1, SCOC, RPL34, RPS3A, NEUROG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, TACR3, MIR577, TLR2, TRPC3, CETN4P, FAM160A1, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, TTC29, CASP6, MND1, SLC10A7, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SMARCA5, MGARP, PRSS12, FHDC1, LAMTOR3, PDE5A, INPP4B, CCNA2, SNORD73A, FLJ20021, PAPSS1, PRMT9, AIMP1, TIFA, NDST3, TRMT10A, TBCK, LRBA, SEC24D) 0.224139695865704 431 0.0653911751253691 0.676873092239678 21289 0.240935414310445 1 1 0 -6.94945086229565 LTS-019 NA NA NA NA LTS-019 chr4 155456834 184241686 28784853 * c(MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, RBM46, AGA, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GPM6A, LINC01098, GRIA2, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC340017, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, NA NA NA NA NA NA NA NA NA LTS-019 SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, CLDN22, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, DDX60, TENM3, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TDO2, TLL1, LINC00290, VEGFC, HAND2-AS1, MAP9, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.221066986079933 166 0.0736211779220303 0.696343575232984 7902 0.261840245952338 1 1 0 -7.25821403701161 LTS-019 NA NA NA NA LTS-019 chr4 184241687 186545396 2303710 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.224209088834546 68 0.058466442053168 0.647588872501588 1923 0.200048899669125 1 1 0 -6.75896991409181 LTS-019 chr4 186545397 190946092 4400696 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.271392555403629 44 0.080957963539513 0.723900359399967 1253 0.207222264058805 1 1 0 -7.40201512027849 LTS-019 chr4 190946093 190981567 35475 * character(0) NA 0 NA 1.34943777666281 17 0.436673656582282 3 NA NA -5.76463077395538 LTS-019 chr5 140347 163205 22859 * PLEKHG4B 0.441 1 NA 0.961909341825455 67 0.164773264990779 2 2 0 -5.76728813404681 LTS-019 chr5 163206 795995 632790 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3, ZDHHC11) 0.438797192949157 51 0.0491410215604031 0.977802882715833 1074 0.273796398446061 2 1 1 -6.89561665758784 LTS-019 chr5 795996 796041 46 * ZDHHC11 0.374 1 NA 3.003 1 NA NA NA NA NA LTS-019 chr5 796042 45261064 44465023 * c(SNORD123, CCDC152, LOC100130744, LOC100132356, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506548, LOC100506639, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, NNT-AS1, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, PAIP1, SLC12A7, ADCY2, MRPS30, SUB1, PAPD7, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, NA NA NA NA NA NA NA NA NA LTS-019 FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, LOC153684, DAB2, DAP, UGT3A2, NIM1K, ADAMTS16, DNAH5, RANBP3L, FGF10, CCT5, PDZD2, FBXL7, ICE1, NNT, TTC33, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, FBXO4, GDNF, GHR, LINC01019, C5orf51, LOC285692, LOC285696, DROSHA, HMGCS1, SLC6A19, LINC01020, LOC340107, LOC340113, PLCXD3, SLC6A18, HCN1, IL7R, C5orf34, ANXA2R, LIFR, FLJ33360, LOC401177, LINC01194, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, OXCT1, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, PRKAA1, ANKH, PRLR, CCL28, PRDM9, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, LINC01021, TMEM267, NIPBL-AS1, LOC648987, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 C6, LOC729506, LSP1P3, C7, C9, ZNF131, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, CARD6, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155) 0.435597691246304 343 0.104919056201526 1.04735286871178 15386 0.365631432558687 2 1 1 -6.77588024427671 LTS-019 NA NA NA NA LTS-019 chr5 45261065 45696278 435214 * HCN1 NA 0 NA 1.11291377467018 81 0.207492816326639 2 NA NA -5.79425114162034 LTS-019 chr5 49692017 49694583 2567 * EMB 0.224 1 NA 0.666914872417569 47 0.223649065989227 1 1 0 -5.76441076636171 LTS-019 chr5 49694584 59189692 9495109 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, LOC642366, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, PLPP1, HSPB3) 0.222106810597545 103 0.0560269033306399 0.637179229136277 3982 0.168397458218749 1 1 0 -7.05602245167578 LTS-019 chr5 59189693 59284243 94551 * PDE4D NA 0 NA 0.785 1 NA NA NA NA NA LTS-019 chr5 59284244 68607146 9322903 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, ERCC8, SREK1, CCDC125, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, CENPK, SMIM15, SLC30A5, CENPH, ELOVL7, TRAPPC13, CCNB1, NDUFAF2, MRPS36) 0.21717557365954 53 0.0608913710727354 0.675545099583573 3901 0.279725995370146 1 1 0 -6.75514278856271 LTS-019 chr5 68607147 68609735 2589 * CCDC125 NA 0 NA 0.867 1 NA NA NA NA NA LTS-019 chr5 68609736 68740198 130463 * c(MARVELD2, CCDC125, RAD17, TAF9) 0.361873832426988 6 0.239381425066079 1.00635148897005 281 0.437283306144005 2 1 1 -6.76210175246664 LTS-019 chr5 68740199 68799972 59774 * OCLN NA 0 NA 0.636 1 NA NA NA NA NA LTS-019 chr5 68799973 69337771 537799 * c(NA, OCLN, GUSBP3, GTF2H2C, SERF1A) NA 0 NA 0.616486184575089 69 0.222564695997632 1 NA NA -5.79996298060192 LTS-019 chr5 69337772 69372302 34531 * c(GUSBP3, SMN1, SMN2, SERF1A) NA 0 NA 0.34 1 NA NA NA NA NA LTS-019 chr5 69372303 70378792 1006490 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) 0.268612703884912 2 0.0806101730552664 0.307276846320574 111 0.182426911082159 0 0 0 -8.30185236778954 LTS-019 chr5 70378793 70388840 10048 * c(GUSBP9, NAIP, LOC647859) NA 0 NA 0.985 1 NA NA NA NA NA LTS-019 chr5 70388841 94860258 24471418 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, FAM81B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, NA NA NA NA NA NA NA NA NA LTS-019 BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, MCTP1, PTCD2, ATG10, FAM172A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ADGRV1, UTP15, ZCCHC9, SLF1, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, TTC37, ZFYVE16) 0.220026009938268 174 0.0675295076468776 0.668827129605541 10819 0.297576637020316 1 1 0 -6.74220155673823 LTS-019 NA NA NA NA LTS-019 chr5 94860259 96369079 1508821 * c(ARSK, LINC01554, RHOBTB3, ELL2, GLRX, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, CAST, SPATA9, TTC37) 0.234947671750592 66 0.0507213145359202 0.614694910168443 1622 0.158808983249029 1 1 0 -6.99694436778114 LTS-019 chr5 96369080 96369178 99 * character(0) NA 0 NA 0.665 1 NA NA NA NA NA LTS-019 chr5 96369179 96371042 1864 * character(0) 0.216 1 NA 1.0230086900082 39 0.30127224384646 2 2 0 -5.76441251957634 LTS-019 chr5 96371043 102895124 6524082 * c(LOC100133050, LOC100289230, CHD1, SLCO6A1, LIX1, PPIP5K2, RGMB, FAM174A, SLCO4C1, RGMB-AS1, PAM, GIN1, RIOK2, ST8SIA4, NUDT12, C5orf30) 0.240851935212856 29 0.0599553816037496 0.667212920142361 1485 0.200433343336286 1 1 0 -6.81364999001196 LTS-019 chr5 102895125 105879502 2984378 * c(NUDT12, RAB9BP1) NA 0 NA 0.663963428969324 33 0.163692362051317 1 NA NA -5.76441073662236 LTS-019 chr5 106712574 106712653 80 * EFNA5 0.443 1 NA 1.013 1 NA NA NA NA NA LTS-019 chr5 106712654 122924110 16211457 * c(LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, TNFAIP8, DTWD2, SNX24, APC, HSD17B4, FAM170A, TICAM2, KCNN2, LOX, MAN2A1, MCC, TMED7, PRR16, COMMD10, PGGT1B, EPB41L4A-AS2, PPIC, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, NA NA NA NA NA NA NA NA NA LTS-019 SNX2, SRP19, LINC00992, REEP5, CAMK4, TSSK1B, TSLP, SLC25A46, ATG12, NREP, PRDM6, FTMT, SNCAIP, PJA2) 0.442260277606463 180 0.0834688179826394 1.03245511439826 6113 0.308209614713961 2 1 1 -6.80166208186782 LTS-019 NA NA NA NA LTS-019 chr5 122924111 125968374 3044264 * c(CSNK1G3, TEX43, ALDH7A1, PHAX, ZNF608, GRAMD3) 0.368668266701474 16 0.117074459924728 1.28128599929945 651 0.515472937916904 3 2 1 -6.79751158216519 LTS-019 chr5 125968375 125971714 3340 * TEX43 NA 0 NA 1.036 1 NA NA NA NA NA LTS-019 chr5 125971715 129522217 3550503 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, TEX43, LMNB1, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.445920288590349 55 0.0440217424088802 1.09633777726937 1703 0.288321531813264 2 1 1 -7.10415070840979 LTS-019 chr5 129522218 140185132 10662915 * c(SRA1, VTRNA2-1, MIR874, MIR1289-2, MIR3936, MIR3661, LINC01024, MIR4461, C5orf66, RAD50, KIF20A, APBB3, SEC24A, BRD8, HNRNPA0, KIF3A, SLC35A4, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, CTNNA1, SLC25A48, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FSTL4, SEPT8, ACSL6, JADE2, HARS2, LRRTM2, FBXL21, KLHL3, GDF9, GFRA3, SNORD63, SNORA74A, PKD2L2, UQCRQ, AFF4, HARS, HINT1, HSPA4, HSPA9, CHSY3, NA NA NA NA NA NA NA NA NA LTS-019 TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, C5orf56, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, CXXC5, RAPGEF6, KDM3B, PFDN1, PITX1, ZCCHC10, WDR55, ANKHD1, PPP2CA, LOC553103, TMCO6, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, C5orf15, CDC42SE2, TRPC7, PURA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ECSCR, SIL1, CCNI2, SKP1, SLC22A4, SLC22A5, SPOCK1, TCF7, TGFBI, SNHG4, MEIKIN, UBE2B, UBE2D2, VDAC1, WNT8A, TXNDC15, CAMLG, SLC4A9, NME5, PCBD2, PSD2, CYSTM1, PDLIM4, EIF4EBP3, CDC23, P4HA2, LYRM7, CDKN2AIPNL, CD14, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, FNIP1, MATR3, DDX46, CDC25C, SLC23A1) 0.428871532690249 152 0.102235308884513 0.949077076494516 10158 0.27142908289009 2 1 1 -7.36351645632108 LTS-019 NA NA NA NA LTS-019 chr5 140185133 140186574 1442 * c(PCDHA3, PCDHA2, PCDHA1) NA 0 NA 0.930744432656541 6 0.159048001140117 2 NA NA -5.76481198554043 LTS-019 chr5 140186575 140186657 83 * c(PCDHA3, PCDHA2, PCDHA1) 0.334 1 NA 2.742 1 NA NA NA NA NA LTS-019 chr5 140186658 143856528 3669871 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, PCDHB5, RELL2, NR3C1, PCDHB1, PCDH1, PCDHGC3, PCDH12, PCDHB18P, PCDHB17P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, NA NA NA NA NA NA NA NA NA LTS-019 PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, KCTD16, PCDHB16, HMHB1, ARAP3, TAF7, LOC729080, NDFIP1, YIPF5, SPRY4, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, PCDHA9, KIAA0141) 0.325597760646774 112 0.0853662443384865 1.30556662840328 4842 0.979146324416785 3 2 1 -6.85964509777133 LTS-019 NA NA NA NA LTS-019 chr5 143856529 143856937 409 * KCTD16 NA 0 NA 1.23213231994596 10 0.136241778549101 3 NA NA -5.76465191787905 LTS-019 chr5 143856938 145197411 1340474 * c(PRELID2, KCTD16) 0.103 1 NA 1.03579518171563 39 0.238356623344177 2 2 0 -5.76444175596801 LTS-019 chr5 145197412 150038433 4841022 * c(PPP2R2B-IT1, CDX1, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, HMGXB3, IL17B, NDST1, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PPP2R2B, RPS14, GRXCR2, SPINK9, SLC6A7, SPINK1, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, FBXO38, TIGD6, NA NA NA NA NA NA NA NA NA LTS-019 SPINK7, CD74, JAKMIP2) 0.133111758497201 91 0.0583836831371099 1.04612865131634 5250 0.545979635625597 2 2 0 -6.74286016994428 LTS-019 NA NA NA NA LTS-019 chr5 150038434 156715747 6677314 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, SYNPO, ZNF300P1, SLC36A2, PPP1R2P3, FAM71B, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, ITK, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, RBM22, NMUR2, SGCD, SPARC, SAP30L, HAVCR2, SMIM3, TIMD4, ZNF300, MYOZ3, CNOT8, HAND1, MED7) 0.145125675970915 111 0.0451561164923962 0.990520104521065 4361 0.273660963841556 2 2 0 -6.85182551540954 LTS-019 chr5 156715748 156721777 6030 * CYFIP2 NA 0 NA 0.584 1 NA NA NA NA NA LTS-019 chr5 156721778 156738096 16319 * CYFIP2 NA 0 NA 0.627379768109184 41 0.0774333938801915 1 NA NA -5.7696330273735 LTS-019 chr5 156738097 156738643 547 * CYFIP2 NA 0 NA 1.005 1 NA NA NA NA NA LTS-019 chr5 156738644 159992573 3253930 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, ATP10B, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, MIR146A, FNDC9, THG1L, ZBED8, TTC1, CCNJL, ADAM19, PTTG1, CLINT1) 0.148020672490349 26 0.0501773010280698 0.981532473284358 1957 0.255850694139858 2 2 0 -6.83698305074243 LTS-019 chr5 159992574 159992578 5 * ATP10B NA 0 NA 1.15 1 NA NA NA NA NA LTS-019 chr5 159992579 168233566 8240988 * c(MIR103B1, NUDCD2, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.137847236882603 30 0.0763264992172353 1.07378953205596 1903 0.322376050288668 2 2 0 -6.78985903545074 LTS-019 chr5 168233567 168244264 10698 * SLIT3 NA 0 NA 0.845 1 NA NA NA NA NA LTS-019 chr5 168244265 175386658 7142394 * c(FAM196B, LOC100268168, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, KCNMB1, LCP2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.130157404955481 103 0.0506024132443946 1.01352688481942 3646 0.431015825395591 2 2 0 -6.76956348386013 LTS-019 chr5 175386659 175387394 736 * THOC3 NA 0 NA 0.309833064838791 40 0.255924262634726 0 NA NA -5.764438215523 LTS-019 chr5 175387395 175395303 7909 * THOC3 0.473 1 NA 0.849594938122215 53 1.06921170350336 2 2 0 -5.7645755816125 LTS-019 chr5 175395304 175476922 81619 * THOC3 0.062 1 NA 1.24320643504066 7 0.905583947358988 3 3 0 -5.76536486636429 LTS-019 chr5 175476923 175717961 241039 * c(LOC100507387, FAM153B, SIMC1, LOC643201) 0.137551190564581 2 0.00989949493661165 0.992071909330002 91 0.365354611556488 2 2 0 -6.7818346171396 LTS-019 chr5 175717962 175721977 4016 * SIMC1 NA 0 NA 1.18 1 NA NA NA NA NA LTS-019 chr5 175721978 180374817 4652840 * c(MIR1229, MIR4281, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, NHP2, NA NA NA NA NA NA NA NA NA LTS-019 RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.101843816405674 203 0.0335878154271605 1.32969718219748 6928 0.457693762877723 3 3 0 -6.78042383430408 LTS-019 NA NA NA NA LTS-019 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.379 1 NA NA NA NA NA LTS-019 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) 0.150983446430669 2 0.0141421356237309 2.38304424105961 64 0.533328686503194 15 13 2 -6.82748562301886 LTS-019 chr5 180429800 180687212 257413 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.112123402249953 21 0.022838876629867 1.29073257761723 531 0.467417882703128 3 3 0 -6.82782566171744 LTS-019 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 1.30305705871109 21 0.480637438844549 3 NA NA -5.76442485173152 LTS-019 chr6 203389 312023 108635 * DUSP22 0.462 1 NA 0.938836117897936 26 0.307696903811827 2 2 0 -5.77125630299834 LTS-019 chr6 312024 367352 55329 * DUSP22 0.381825709175473 9 0.130179683514748 0.968431369551805 89 0.323998688899477 2 1 1 -6.77174384030735 LTS-019 chr6 367353 410417 43065 * IRF4 0.119 1 NA 0.997561177801079 118 0.309119453012301 2 2 0 -5.76482362467824 LTS-019 chr6 410418 29691303 29280886 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, NA NA NA NA NA NA NA NA NA LTS-019 DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, ZSCAN23, NKAPL, TOB2P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZSCAN12, KIAA0319, NUP153) 0.140097761936055 437 0.0531734234322266 0.998863364588758 15126 0.383541559586052 2 2 0 -6.89901971194519 LTS-019 NA NA NA NA LTS-019 chr6 29691304 29691713 410 * character(0) 0.196 1 NA 0.726370743635926 9 0.332542269660732 1 1 0 -5.7644280808795 LTS-019 chr6 29691714 29910180 218467 * character(0) 0.239594561066765 52 0.146179700717852 0.88785273181702 202 0.449245196155348 1 1 0 -6.79922139000854 LTS-019 chr6 29910181 29910189 9 * character(0) 0.13 1 NA 0.069 1 NA NA NA NA NA LTS-019 chr6 29910190 29911223 1034 * character(0) 0.313177417888039 27 0.151567996456566 0.478291683483859 53 0.613908996059408 7 5 2 -6.73947359244191 LTS-019 chr6 29911224 29911239 16 * character(0) 0.211 1 NA 0.768 1 NA NA NA NA NA LTS-019 chr6 29911240 30075903 164664 * character(0) 0.240708456249276 52 0.0975158938199887 0.94456368860771 283 0.404028097669566 1 1 0 -6.83675894508074 LTS-019 chr6 30075904 30104783 28880 * character(0) 0.144 1 NA 0.926867301917519 35 0.243802830516931 2 2 0 -5.76810444669636 LTS-019 chr6 30104784 30152437 47654 * character(0) 0.113096032580643 36 0.0356539808325291 1.14179759434188 263 0.871922320550428 3 3 0 -6.78011463773565 LTS-019 chr6 30152438 30154199 1762 * character(0) 0.108186692149833 2 0.014142135623731 1.59970754367606 38 0.667416809590558 12 11 1 -6.73788201651434 LTS-019 chr6 30154200 30228416 74217 * character(0) 0.111 1 NA 1.32255582137995 51 0.373812661479454 3 3 0 -5.76573898331293 LTS-019 chr6 30228417 30692965 464549 * character(0) 0.150216698750748 54 0.0836637641799454 1.30522593783992 1374 0.326770535701941 2 2 0 -6.87608263659932 LTS-019 chr6 30692966 30861000 168035 * character(0) 0.076 1 NA 1.3043877519139 175 0.239928712319043 3 3 0 -5.77515999748105 LTS-019 chr6 30861001 31106236 245236 * character(0) 0.096516208660617 41 0.0289146346606865 1.45087698866924 733 0.669183258685792 3 3 0 -6.76566340202416 LTS-019 chr6 31106237 31106459 223 * character(0) 0.131 1 NA 1.13582090873587 3 0.668271651351454 2 2 0 -5.76441258785056 LTS-019 chr6 31106460 31237932 131473 * character(0) 0.125713063685242 36 0.0243249170050298 1.28940054499467 338 3.04722483756655 10 9 1 -6.75621368057901 LTS-019 chr6 31237933 31239827 1895 * character(0) 0.219130372936372 30 0.111298397712336 0.730515090186042 60 7.28373958936271 1 1 0 -6.73303013211091 LTS-019 chr6 31239828 31239855 28 * character(0) 0.109 1 NA 0.482951955880112 2 0.864791593391148 1 1 0 -5.76441232812897 LTS-019 chr6 31239856 31382964 143109 * character(0) 0.183703316465487 40 0.110398204068447 0.898623737878396 130 0.607721887058168 1 1 0 -6.81519459871048 LTS-019 chr6 31382965 31382980 16 * character(0) NA 0 NA 0.815 1 NA NA NA NA NA LTS-019 chr6 31382981 31431060 48080 * character(0) NA 0 NA 1.143 1 NA NA NA NA NA LTS-019 chr6 31431061 31431691 631 * character(0) 0.132 1 NA 1.22837959542994 11 0.292471226245965 3 3 0 -5.76449484232827 LTS-019 chr6 31431692 31779807 348116 * character(0) 0.109597397855545 56 0.0277586771270562 1.3239659303419 1987 0.354982535726371 3 3 0 -6.77090886954735 LTS-019 chr6 31779808 31783256 3449 * character(0) NA 0 NA 1.09 1 NA NA NA NA NA LTS-019 chr6 31783257 31797671 14415 * character(0) 0.104618052946039 2 0.0176776695296637 0.522663017171685 40 0.487923438062014 3 3 0 -6.77222162972509 LTS-019 chr6 31797672 31938412 140741 * character(0) 0.108061100470991 14 0.0280505822548332 1.3638054245079 786 0.322574756941177 3 3 0 -6.75155195204085 LTS-019 chr6 31938413 31938451 39 * character(0) 0.137 1 NA 0.304 1 NA NA NA NA NA LTS-019 chr6 31938452 32020717 82266 * character(0) 0.24026415201495 9 0.146628782986152 1.31386227235971 374 0.562135397257733 5 4 1 -6.77122731397003 LTS-019 chr6 32020718 32025870 5153 * character(0) 0.071 1 NA 1.35081618269996 25 0.321701041341181 3 3 0 -5.7644664973292 LTS-019 chr6 32025871 32427918 402048 * character(0) 0.0963215314119954 53 0.0286061159435514 1.404889651094 1339 0.438391214027891 3 3 0 -6.7680541856935 LTS-019 chr6 32427919 32427927 9 * character(0) NA 0 NA 1.324 1 NA NA NA NA NA LTS-019 chr6 32427928 32546463 118536 * HLA-DRB5 0.0982883901426074 7 0.129255192398235 0.717171114648413 39 0.999921870092258 3 3 0 -6.76630098687955 LTS-019 chr6 32546464 32546466 3 * HLA-DRB5 NA 0 NA 2.955 1 NA NA NA NA NA LTS-019 chr6 32546467 32548732 2266 * HLA-DRB5 0.0888294119989604 24 0.0541407184224992 1.90015756786523 45 1.64064595648953 15 14 1 -6.73372675325668 LTS-019 chr6 32548733 32549259 527 * HLA-DRB5 NA 0 NA 0.901 1 NA NA NA NA NA LTS-019 chr6 32549260 32549611 352 * HLA-DRB5 0.100712731389223 7 0.069592692555633 1.20463391228399 13 0.76665409409981 13 12 1 -6.73380504613895 LTS-019 chr6 32549612 32549613 2 * HLA-DRB5 0.281 1 NA 0.468 1 NA NA NA NA NA LTS-019 chr6 32549614 32552056 2443 * HLA-DRB5 0.14404969872668 7 0.081908194833926 0.880983548780508 24 1.85490868119692 9 8 1 -6.73414331881962 LTS-019 chr6 32552057 32552059 3 * HLA-DRB5 0.174 1 NA 1.687 1 NA NA NA NA NA LTS-019 chr6 32552060 32557506 5447 * HLA-DRB5 0.208303908070879 11 0.12184931081239 1.37989294873826 19 0.82125770755727 6 5 1 -6.73519069498866 LTS-019 chr6 32557507 32557552 46 * HLA-DRB5 0.106 1 NA 1.89619294652337 3 0.759708057962619 4 4 0 -5.76441030792514 LTS-019 chr6 32557553 32634490 76938 * c(HLA-DQA1, HLA-DRB5) 0.0610127552816854 72 0.0384292126102869 2.25059073496663 195 1.76641901537545 6 6 0 -6.73776993258417 LTS-019 chr6 32634491 32634501 11 * character(0) NA 0 NA 1.299 1 NA NA NA NA NA LTS-019 chr6 32634502 32731252 96751 * character(0) 0.0664288897159202 12 0.0348123758906443 1.5387386005745 79 1.02476345747908 5 5 0 -6.74002515440184 LTS-019 chr6 32731253 32784620 53368 * character(0) 0.15 1 NA 1.18032984551223 47 0.23787507118488 2 2 0 -5.77383115660841 LTS-019 chr6 32784621 32917544 132924 * character(0) 0.141732920397979 24 0.062715830237021 1.21530857942838 418 0.365542796203786 2 2 0 -6.74825924508917 LTS-019 chr6 32917545 32940621 23077 * character(0) 0.084 1 NA 1.26501790221249 63 0.32211036867157 3 3 0 -5.76599699126626 LTS-019 chr6 32940622 32973265 32644 * character(0) 0.102344987740386 5 0.0237739353073907 1.28542245845687 125 0.267785681035678 3 3 0 -6.7362654769455 LTS-019 chr6 32973266 33048723 75458 * character(0) 0.0724063161920306 9 0.0393160272662435 2.02009499252453 146 8.81452972082067 18 17 1 -6.73527124459565 LTS-019 chr6 33048724 33052693 3970 * character(0) NA 0 NA 2.526 1 NA NA NA NA NA LTS-019 chr6 33052694 33054760 2067 * character(0) NA 0 NA 4.59580223370811 42 53.8354243409831 12 NA NA -5.7644101352554 LTS-019 chr6 33054761 37599840 4545080 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, NA NA NA NA NA NA NA NA NA LTS-019 UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.0974000330161685 152 0.0462997342177809 1.3543723408065 6815 0.75618335971358 3 3 0 -6.75052881341855 LTS-019 NA NA NA NA LTS-019 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.901 1 NA NA NA NA NA LTS-019 chr6 37599845 38147355 547511 * c(BTBD9, MDGA1, ZFAND3) 0.0901200599112032 25 0.0177864180392418 1.51575207609005 495 0.711668684663063 4 4 0 -6.88184348231772 LTS-019 chr6 38147356 38224303 76948 * BTBD9 NA 0 NA 1.37628938972667 17 0.18890135147276 3 NA NA -5.76520306384964 LTS-019 chr6 38224304 38256027 31724 * BTBD9 NA 0 NA 0.626 1 NA NA NA NA NA LTS-019 chr6 38256028 38690855 434828 * c(BTBD9, DNAH8, GLO1) 0.155 1 NA 0.620960545291899 115 0.129237845647167 1 1 0 -5.83344595159183 LTS-019 chr6 38690856 41309698 2618843 * c(LOC100131047, APOBEC2, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MOCS1, NFYA, TREM2, TREM1, SAYSD1, LRFN2, TDRG1, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.228003592470831 40 0.067212083010156 0.666351787466184 1944 0.178639558297025 1 1 0 -6.7442937628078 LTS-019 chr6 41309699 41318527 8829 * NCR2 NA 0 NA 0.692176758482091 12 0.155179270718115 1 NA NA -5.76479276732518 LTS-019 chr6 41318528 41621271 302744 * c(MIR4641, FOXP4, MDFI, NCR2) 0.486 1 NA 1.0379903811173 207 0.168835556805373 2 2 0 -5.76441260423046 LTS-019 chr6 41621272 42585022 963751 * c(TOMM6, FRS3, TAF8, UBR2, USP49, GUCA1A, GUCA1B, PRICKLE4, MDFI, PGC, MRPS10, TRERF1, C6orf132, BYSL, TFEB, CCND3, MED20) 0.444330830845551 39 0.0772754768683841 0.999945351025601 1316 0.310416546020307 2 1 1 -6.8300922525803 LTS-019 chr6 42585023 42587763 2741 * UBR2 0 1 NA 0.997297495868719 11 0.714824428539179 2 2 0 -5.76441512162141 LTS-019 chr6 42587764 44185523 1597760 * c(LINC01512, DNPH1, CNPY3, SLC22A7, CAPN11, KLHDC3, PTCRA, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, GNMT, RPL7L1, CRIP3, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, POLH, GTPBP2, MRPS18A, PPP2R5D, TMEM63B, XPO5, PTK7, PRPH2, MRPL14, DLK2, SRF, TBCC, VEGFA, TTBK1, RRP36, ABCC10, KLC4, TJAP1, POLR1C, MAD2L1BP, CUL7) 0.329055892414609 16 0.219247795503931 1.01025546553948 3701 0.217214884761178 2 1 1 -6.83668152983037 LTS-019 chr6 44185524 44198312 12789 * SLC29A1 0.394 1 NA 1.04060920982471 45 0.228781775957136 2 2 0 -5.76441158214339 LTS-019 chr6 44198313 46190659 1992347 * c(MIR4647, MIR4642, RCAN2, TCTE1, SLC29A1, SPATS1, ENPP4, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, CLIC5, AARS2, ENPP5, MIR586, SUPT3H, RUNX2, CDC5L) 0.452953902295365 19 0.109913123587869 1.03139813246051 1243 0.269320823642106 2 1 1 -6.80669094246877 LTS-019 chr6 46190660 46190708 49 * RCAN2 NA 0 NA 1.065 1 NA NA NA NA NA LTS-019 chr6 46190709 50811448 4620740 * c(ANKRD66, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, CENPQ, RHAG, TFAP2B, CRISP2, PLA2G7, TFAP2D, SLC25A27) 0.44593107548867 48 0.0442088651614724 1.09454544085826 2094 0.261647156783468 2 1 1 -7.13904617364753 LTS-019 chr6 50811449 53516444 2704996 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, TFAP2B, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.400453858103895 38 0.155162735202265 0.996022515943293 1847 0.253641593870549 2 1 1 -6.77923670387827 LTS-019 chr6 53516445 53516450 6 * KLHL31 NA 0 NA 1.188 1 NA NA NA NA NA LTS-019 chr6 53516451 56911537 3395087 * c(MLIP-IT1, BEND6, FAM83B, TINAG, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, KIAA1586, BMP5, DST, COL21A1, MLIP) 0.449407931664419 28 0.0930940811035156 1.08674108434796 1927 0.223433507439783 2 1 1 -6.90396457921703 LTS-019 chr6 56911538 56915525 3988 * KIAA1586 NA 0 NA 1.605 1 NA NA NA NA NA LTS-019 chr6 56915526 56955041 39516 * c(ZNF451, KIAA1586) 0.386 1 NA 1.56312484547252 66 0.297985436355068 3 3 0 -5.76721616103812 LTS-019 chr6 56955042 56963810 8769 * ZNF451 NA 0 NA 0.905 1 NA NA NA NA NA LTS-019 chr6 56963811 57398226 434416 * c(ZNF451, RAB23, PRIM2, BAG2) 0.417820662611246 24 0.10417668937289 1.04870573825477 490 0.257394948135294 2 1 1 -6.73416243635629 LTS-019 chr6 57398227 57398264 38 * PRIM2 0.373 1 NA 1.049 1 NA NA NA NA NA LTS-019 chr6 57398265 57512678 114414 * PRIM2 0.333847843169499 22 0.051834339016705 1.32808002461764 60 0.630512153944067 6 4 2 -6.85871238037321 LTS-019 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.969633023669056 19 0.164164498160048 2 NA NA -5.85758943822105 LTS-019 chr6 62390154 62442604 52451 * KHDRBS2 0.481 1 NA 1.17480773697026 27 0.217144076266312 2 2 0 -5.77472770389896 LTS-019 chr6 62442605 70447993 8005389 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, LMBRD1, ADGRB3, PTP4A1) 0.436642155420098 22 0.100984429385698 1.08131595419661 1130 0.298032357867556 2 1 1 -6.85390751731332 LTS-019 chr6 70447994 70451573 3580 * LMBRD1 0 1 NA 1.07308260047162 4 0.475888905102861 2 2 0 -5.76442101314514 LTS-019 chr6 70451574 71266593 815020 * c(COL9A1, COL19A1, LMBRD1, FAM135A) 0.33543677436073 9 0.237196121384815 1.05719561584651 690 0.32251559367491 2 1 1 -6.80040413395946 LTS-019 chr6 71266594 71570880 304287 * c(SDHAF4, FAM135A, SMAP1) 0.47 1 NA 1.03611153319721 210 0.337495061979183 2 2 0 -5.76441240138168 LTS-019 chr6 71570881 73951866 2380986 * c(KHDC1L, MIR4282, KCNQ5-AS1, B3GAT2, RIMS1, MIR30A, MIR30C2, KCNQ5, SMAP1, OGFRL1, LINC00472, KHDC1) 0.46116826662018 6 0.02258982071642 1.05057275879117 664 0.318404422735355 2 1 1 -8.59555368258209 LTS-019 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.902 1 NA NA NA NA NA LTS-019 chr6 73952151 74492461 540311 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.446854831270067 17 0.0485593935905542 0.939174575665619 705 0.225124842702312 2 1 1 -7.05307156223336 LTS-019 chr6 74492462 85445422 10952961 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.449314351288783 69 0.0684156595546171 1.07732519016053 3852 0.275060765946334 2 1 1 -7.00750501619481 LTS-019 chr6 85445423 90338863 4893441 * c(SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, LINC01590, SNORD50B, SPACA1, RNGTT, TBX18) 0.447141536323725 49 0.0780952943524768 1.01133912657034 2410 0.229288590213912 2 1 1 -6.87277777391909 LTS-019 chr6 90338864 90340734 1871 * c(ANKRD6, LYRM2) 0.478 1 NA 1.01729978449273 21 0.132666499162373 2 2 0 -5.76443440512518 LTS-019 chr6 90340735 90583380 242646 * c(ANKRD6, MDN1, LYRM2, CASP8AP2) 0.30889383885617 9 0.211198826806506 1.00312099789379 865 0.255923219728642 2 1 1 -6.88151294676197 LTS-019 chr6 90583381 90583396 16 * CASP8AP2 0.489 1 NA 1.198 1 NA NA NA NA NA LTS-019 chr6 90583397 91296539 713143 * c(MIR4464, BACH2, MAP3K7, GJA10, CASP8AP2) 0.483294666337845 9 0.0190248375668347 0.973159937329622 385 0.189210990513968 2 1 1 -10.6462722373982 LTS-019 chr6 91296540 105177190 13880651 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.452811533238806 49 0.0436133580454429 1.07355412590529 2433 0.260559434127455 2 1 1 -7.30778476605236 LTS-019 chr6 105177191 121624921 16447731 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-019 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.451670312393663 241 0.0723271490781707 1.01271967718345 8970 0.272464850951454 2 1 1 -6.96443447964423 LTS-019 NA NA NA NA LTS-019 chr6 121624922 121625458 537 * TBC1D32 NA 0 NA 1.255 1 NA NA NA NA NA LTS-019 chr6 121625459 123103898 1478440 * c(FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1) 0.465038897300357 9 0.0265946945419152 1.10132767449295 367 0.240190626271149 2 1 1 -8.42599812345981 LTS-019 chr6 123103899 123130743 26845 * c(SMPDL3A, FABP7) 0.462 1 NA 1.15075161249198 65 0.75718068606255 2 2 0 -5.7647125228267 LTS-019 chr6 123130744 125231211 2100468 * c(TRDN, SMPDL3A, CLVS2, NKAIN2, RNF217-AS1) 0.292454899977767 9 0.225084120077608 1.11218961976318 472 0.357200349867777 2 1 1 -6.95159038612101 LTS-019 chr6 125231212 125402711 171500 * c(RNF217, RNF217-AS1) 0.48 1 NA 1.0869938761809 123 0.181869409028998 2 2 0 -5.77120220250827 LTS-019 chr6 125402712 127647717 2245006 * c(MIR5695, NCOA7, HINT3, RNF217, HEY2, CENPW, HDDC2, ECHDC1, TRMT11, LOC643623, TPD52L1, RNF146, RSPO3) 0.452334523987007 23 0.0346880508181884 1.10128365139477 944 0.314706836755399 2 1 1 -7.42619825482826 LTS-019 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.964 1 NA NA NA NA NA LTS-019 chr6 127648124 139144140 11496017 * c(LOC100130476, LINC00271, NHEG1, MIR3145, MIR3662, SMLR1, LINC01013, GVQW2, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, TAAR1, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, EPB41L2, EYA4, HEBP2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, TAAR6, SLC35D3, IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, SOGA3, THEMIS, LAMA2, MAP3K5, FLJ46906, MYB, ENPP1, ENPP3, PEX7, IL20RA, AHI1, VNN3, ECHDC1, ARFGEF3, NHSL1, NA NA NA NA NA NA NA NA NA LTS-019 PTPRK, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, ALDH8A1, TCF21, TNFAIP3, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1) 0.438499144358027 100 0.112944328379655 1.01541805721163 6231 0.465771547621085 2 1 1 -6.7748116820605 LTS-019 NA NA NA NA LTS-019 chr6 139144141 139144991 851 * ECT2L NA 0 NA 0.237956219714819 39 0.248170409107966 0 NA NA -5.76473925322488 LTS-019 chr6 139144992 139145001 10 * ECT2L NA 0 NA 0.79 1 NA NA NA NA NA LTS-019 chr6 139145002 145051594 5906593 * c(LOC100132735, MIR3668, LINC01277, MIR4465, CITED2, ADAT2, LOC153910, ZC2HC1B, TXLNB, FUCA2, PHACTR2-AS1, HIVEP2, ECT2L, NMBR, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, UTRN, SF3B5, LTV1, REPS1, PEX3, STX11, PHACTR2) 0.436370597829614 44 0.103025035956444 1.02649366378394 2146 0.266432347776522 2 1 1 -6.76583176289751 LTS-019 chr6 145051595 145051679 85 * UTRN NA 0 NA 1.26156937728493 3 0.0357957166897567 3 NA NA -5.76490167123213 LTS-019 chr6 145051680 145069383 17704 * UTRN NA 0 NA 0.788 1 NA NA NA NA NA LTS-019 chr6 145069384 145114935 45552 * UTRN 0.2 1 NA 0.719761283001102 37 0.214994912294018 1 1 0 -5.76826670598162 LTS-019 chr6 145114936 167787735 22672800 * c(UST-AS1, LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, LOC100507557, CAHM, MIR4466, RAET1E-AS1, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, PDE10A, RAB32, KATNA1, FGFR1OP, SFT2D1, GINM1, TAGAP, CCR6, STXBP5, PACRG, RAET1E, CNKSR3, RAET1L, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, TAB2, SASH1, SYNE1, SHPRH, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, NA NA NA NA NA NA NA NA NA LTS-019 GRM1, ZC3H12D, IGF2R, NUP43, RAET1G, SUMO4, SAMD5, IYD, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, PCMT1, TFB1M, SNX9, MPC1, PLG, UNC93A, MTRF1L, RMND1, AGPAT4, TULP4, PLEKHG1, ARID1B, TMEM181, ZBTB2, RPS6KA2, RPS18P9, RAET1K, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, KATNBL1P6, STXBP5-AS1, TMEM242, LOC729603, UTRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 EZR, VIP, ULBP3, EPM2A, ARMT1, ZDHHC14, ADGB, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, PPP1R14C, RSPH3, TTLL2, FBXO30, FNDC1, LRP11, SERAC1, PPIL4, RNASET2, SYNJ2, LINC00473, LATS1, SYTL3, QKI, WTAP, AKAP12) 0.219308169171502 308 0.0686210747313708 0.671319318925839 11924 0.207788185946354 1 1 0 -6.77169682352768 LTS-019 NA NA NA NA LTS-019 chr6 167787736 167794761 7026 * TCP10 0.410245838984408 8 0.0781440976657866 0.449809264072645 85 0.256625195092576 0 0 0 -6.7470430267046 LTS-019 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 0.698 1 NA NA NA NA NA LTS-019 chr6 167796265 168707814 911550 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, AFDN-AS1, TCP10, FRMD1) 0.230937994698645 23 0.0470018921492811 0.715125503415296 611 0.168059822300402 1 1 0 -6.87619137494027 LTS-019 chr6 168707815 170891863 2184049 * c(MIR4644, LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.231207731730379 36 0.0461197888181952 0.647016102314593 1174 0.15918773823478 1 1 0 -6.80846486867602 LTS-019 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.600644514662611 21 0.145288547052966 1 NA NA -5.76490452614991 LTS-019 chr7 193047 228788 35742 * FAM20C 0.15 1 NA 0.98216257479455 51 0.229256742796471 2 2 0 -5.76562902067805 LTS-019 chr7 228789 1133305 904517 * c(WI2-2373I1.2, ADAP1, GPR146, SUN1, GPER1, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, C7orf50, COX19) 0.156955578427718 47 0.0764605428707919 0.98545417983578 1078 0.272632404355692 2 2 0 -6.78045714922433 LTS-019 chr7 1133306 1191689 58384 * c(GPER1, C7orf50) 0.159 1 NA 0.984028095568844 13 0.14943024270842 2 2 0 -5.76877462494026 LTS-019 chr7 1191690 5926027 4734338 * c(RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, PSMG3-AS1, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, TFAMP1, WIPI2, INTS1, GNA12, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, NUDT1, RNF216, CHST12, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, CARD11, TNRC18, EIF3B, ZFAND2A, AP5Z1) 0.143933296415273 120 0.0824749244635368 1.00803798300747 4267 0.325525703371113 2 2 0 -6.75611517570488 LTS-019 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.739 1 NA NA NA NA NA LTS-019 chr7 5937950 5983639 45690 * c(RSPH10B, CCZ1) 0.161530693491136 4 0.0343171482886715 0.755315270507382 95 0.644597360372256 8 7 1 -6.87642393446347 LTS-019 chr7 5983640 5984647 1008 * RSPH10B NA 0 NA 0.624 1 NA NA NA NA NA LTS-019 chr7 5984648 6017391 32744 * c(RSPH10B, PMS2) NA 0 NA 0.305443829665278 39 0.349590541288955 0 NA NA -5.76481701755738 LTS-019 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.834 1 NA NA NA NA NA LTS-019 chr7 6018171 6821140 802970 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.129201366940991 18 0.072102505100933 0.967664085725232 1305 0.300452321305639 2 2 0 -6.77296354023625 LTS-019 chr7 6821141 6825552 4412 * RSPH10B2 NA 0 NA 1.452 1 NA NA NA NA NA LTS-019 chr7 6825553 6863802 38250 * c(CCZ1B, RSPH10B2) 0.251409254432741 2 0.229102597104441 1.5551295382968 69 0.451188873314978 5 4 1 -6.74641595583854 LTS-019 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.839 1 NA NA NA NA NA LTS-019 chr7 6864270 20826452 13962183 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, TWIST1, UMAD1, ISPD, SCIN, PHF14, HDAC9) 0.1394278658074 87 0.0404151901752203 1.04446000265214 4019 0.281372343344635 2 2 0 -6.73826427773417 LTS-019 chr7 20826453 20826558 106 * SP8 NA 0 NA 1.12941386664743 3 0.0427239199200323 2 NA NA -5.76465969398064 LTS-019 chr7 21467647 21582963 115317 * c(SP4, DNAH11) 0.409 1 NA 0.637370142489546 133 0.148052839982044 1 1 0 -5.76965526395309 LTS-019 chr7 21582964 29186256 7603293 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, KLHL7-AS1, RNU6-16P, HOXA10-AS, GPNMB, IGF2BP3, NUPL2, HIBADH, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, DFNA5, EVX1, HOXA11-AS, JAZF1, STEAP1B, RPS2P32, OSBPL3, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, FAM221A, IL6, MIR148A, LOC441204, MIR196B, NPY, MPP6, NA NA NA NA NA NA NA NA NA LTS-019 CYCS, CPVL, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SNORD93, FAM126A, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, KIAA0087, TRIL) 0.231845238169139 76 0.064966867399076 0.653857915858291 4318 0.231856852475724 1 1 0 -6.77581330746132 LTS-019 NA NA NA NA LTS-019 chr7 29186257 29332610 146354 * c(CHN2, CPVL) NA 0 NA 0.635934287599351 29 0.0781310317868567 1 NA NA -5.79093583140491 LTS-019 chr7 29332611 29394131 61521 * CHN2 NA 0 NA 0.936 1 NA NA NA NA NA LTS-019 chr7 29394132 29439773 45642 * CHN2 0.423 1 NA 1.13371717935698 19 0.189370841972764 2 2 0 -5.77043073507207 LTS-019 chr7 29439774 34989515 5549742 * c(DPY19L1P1, LOC100130673, MIR550B2, MIR550B1, INMT-FAM188B, MIR550A3, NOD1, PPP1R17, INMT, CHN2, FKBP9, ADCYAP1R1, CRHR2, BMPER, DKFZP586I1420, MTURN, PRR15, CCDC129, ZNRF2, AVL9, DPY19L1, LSM5, KBTBD2, GARS, GHRHR, BBS9, AQP1, NPSR1, LOC401320, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, DPY19L2P3, NT5C3A, PDE1C, FKBP14, RP9, NEUROD6, WIPF3, LOC646762, MIR550A1, MIR550A2, GGCT, FAM188B, PLEKHA8, SCRN1) 0.435449393048688 118 0.0936895469293369 1.06210154824545 3413 0.304358801689607 2 1 1 -6.78323721415002 LTS-019 chr7 34989516 34994303 4788 * DPY19L1 NA 0 NA 0.906 1 NA NA NA NA NA LTS-019 chr7 34994304 38299826 3305523 * c(MIR1200, AOAH-IT1, DPY19L1, KIAA0895, AOAH, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, TBX20, HERPUD2, SFRP4, EEPD1, STARD3NL, ELMO1, SEPT7) 0.442943671583816 47 0.0357622300099161 0.979227085228488 1384 0.242801021568299 2 1 1 -7.20378987301415 LTS-019 chr7 38299827 38301699 1873 * TARP NA 0 NA 1.234 1 NA NA NA NA NA LTS-019 chr7 38301700 38402496 100797 * c(TRG-AS1, TARP) 0.426102550408848 9 0.0533317708104445 1.38086890147188 95 0.760019508649242 4 2 2 -6.76889555952202 LTS-019 chr7 38402497 38402580 84 * TRG-AS1 NA 0 NA 1.071 1 NA NA NA NA NA LTS-019 chr7 38402581 57245247 18842667 * c(DDC-AS1, LOC100130849, C7orf72, MIR3943, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, NA NA NA NA NA NA NA NA NA LTS-019 HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, C7orf69, VOPP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.447252757997407 195 0.081285341812347 1.01464533682021 8821 0.27703307887181 2 1 1 -6.90101938095035 LTS-019 NA NA NA NA LTS-019 chr7 57245248 57533232 287985 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 1.0696844707206 95 0.454883015368537 2 NA NA -5.76519705797223 LTS-019 chr7 62758725 63023528 264804 * ZNF733P 0.271 1 NA 0.94600342535604 7 0.783664195576506 2 2 0 -5.76660730248921 LTS-019 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.468451132073089 17 0.0351125291866358 1.00577881565034 607 0.29340615674993 2 1 1 -7.90935988587823 LTS-019 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.663 1 NA NA NA NA NA LTS-019 chr7 64643340 65150775 507436 * c(ZNF92, LOC441242, INTS4P2) 0.460125674703986 6 0.0210206247924905 0.640172850098936 91 0.145620827482972 2 1 1 -10.9813221074469 LTS-019 chr7 65150776 65154685 3910 * c(LOC441242, INTS4P2) NA 0 NA 0.876 1 NA NA NA NA NA LTS-019 chr7 65154686 70765503 5610818 * c(MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, TPST1) 0.429014939345954 30 0.0862045415770291 1.02790626788876 1161 0.237279346678578 2 1 1 -6.75533523354852 LTS-019 chr7 70765504 71142334 376831 * c(MIR3914-1, MIR3914-2, WBSCR17) 0 1 NA 1.13407419757847 51 0.723365021082365 2 2 0 -5.76784256507252 LTS-019 chr7 71142335 73112059 1969725 * c(MIR4650-1, WBSCR22, TRIM50, SBDSP1, VPS37D, NSUN5P2, TBL2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, MLXIPL, LOC541473, NSUN5, WBSCR17, NCF1B, FZD9, CALN1, DNAJC30, FKBP6, BAZ1B, BCL7B, POM121) 0.265037035107028 11 0.213682857609972 0.996085740019506 1231 0.344570582591669 2 2 0 -6.94710472201629 LTS-019 chr7 73112060 73150511 38452 * c(MIR4284, WBSCR22, ABHD11-AS1, STX1A, ABHD11) 0.47 1 NA 1.00080960635147 89 0.242070602740047 2 2 0 -5.76491622781962 LTS-019 chr7 73150512 73944185 793674 * c(WBSCR28, CLDN4, CLDN3, WBSCR27, ELN, LIMK1, RFC2, MIR590, EIF4H, CLIP2, LAT2, ABHD11, GTF2IRD1) 0.459903954533325 23 0.0301563776774417 1.0138698205543 923 0.218701605565449 2 1 1 -7.86610569693229 LTS-019 chr7 73944186 73952505 8320 * GTF2IRD1 0 1 NA 1.05536634660365 13 0.287595625122747 2 2 0 -5.76442803753809 LTS-019 chr7 73952506 75048750 1096245 * c(POM121C, NSUN5P1, GTF2I, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1, NCF1C, GATSL2, RCC1L, GTF2IRD2, GTF2IRD1) 0.33334246973614 9 0.195405632239992 0.995352022013245 345 0.408054625408358 2 1 1 -6.8411507984752 LTS-019 chr7 75048751 75115226 66476 * POM121C 0.375 1 NA 0.955782744696844 47 0.230768644831913 2 2 0 -5.76942824192503 LTS-019 chr7 75115227 77538297 2423071 * c(POM121C, PMS2P9, LOC100133091, APTR, MIR4651, CCL26, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A, TMEM60) 0.429103609447375 55 0.0829535385760581 0.998974963120398 1830 0.285174861038558 2 1 1 -6.77723711677355 LTS-019 chr7 77538298 77539549 1252 * PHTF2 NA 0 NA 1.092 1 NA NA NA NA NA LTS-019 chr7 77539550 91502731 13963182 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, LOC101409256, SEMA3A, SEMA3C, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, SEMA3D, STEAP2, STEAP1, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, PHTF2, SRI, CACNA2D1, TMEM243, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12, CD36, SEMA3E, MAGI2, DMTF1) 0.445218152417747 67 0.0878128586576901 1.07825820595301 4887 0.255055651042338 2 1 1 -6.99304397210746 LTS-019 chr7 91502732 91502797 66 * MTERF1 NA 0 NA 0.941 1 NA NA NA NA NA LTS-019 chr7 91502798 93536166 2033369 * c(MIR4652, AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.432363944660328 28 0.123394981375141 0.980888836805543 2151 0.227231580552086 2 1 1 -6.81888466769953 LTS-019 chr7 93536167 93538761 2595 * GNGT1 NA 0 NA 1.086 1 NA NA NA NA NA LTS-019 chr7 93538762 98937684 5398923 * c(MIR3609, LOC100506136, SLC25A13, BET1, ARPC1A, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, SHFM1, TRRAP, MYH16, SGCE) 0.440229685108326 54 0.0711270872711357 1.04859839091118 3373 0.260792531375237 2 1 1 -6.8169706794425 LTS-019 chr7 98937685 98941907 4223 * ARPC1A NA 0 NA 0.831 1 NA NA NA NA NA LTS-019 chr7 98941908 100464888 1522981 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, NA NA NA NA NA NA NA NA NA LTS-019 SLC12A9, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, ZNF394, BUD31, TRIM4, AP4M1, ATP5J2) 0.445580720441023 52 0.0943125719975996 0.988759606295383 4358 0.753101292575314 2 1 1 -6.80181684749718 LTS-019 NA NA NA NA LTS-019 chr7 100464889 100549499 84611 * c(UFSP1, ACHE, SRRT, TRIP6) NA 0 NA 1.0312122629486 242 0.317213361408071 2 NA NA -5.76442786918953 LTS-019 chr7 100549500 100549505 6 * character(0) 0.212 1 NA 5.259 1 NA NA NA NA NA LTS-019 chr7 100549506 100550184 679 * character(0) 0.383232353473191 23 0.0704664021643797 2.10011705151108 36 0.867029246499629 13 8 5 -6.7336895710778 LTS-019 chr7 100550185 100550203 19 * character(0) 0.074 1 NA 1.40958379535656 3 0.667026985960838 3 3 0 -5.76441013466918 LTS-019 chr7 100550204 100550504 301 * character(0) 0.239202390965431 8 0.137092708465059 1.74563663996586 19 0.652881986953913 5 4 1 -6.73311630225794 LTS-019 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.164 1 NA NA NA NA NA LTS-019 chr7 100550727 100551220 494 * character(0) 0.283789230134857 10 0.115744738301335 0.646369505799814 39 0.380379782161806 4 3 1 -6.7372034359107 LTS-019 chr7 100551221 100551222 2 * character(0) 0.278 1 NA 1.672 1 NA NA NA NA NA LTS-019 chr7 100551223 100551565 343 * character(0) 0.298251065150553 20 0.0814279629973312 1.93049856257701 26 0.799047245161386 14 10 4 -6.73358287749464 LTS-019 chr7 100551566 100551578 13 * character(0) 0.392 1 NA 2.292 1 NA NA NA NA NA LTS-019 chr7 100551579 100552867 1289 * character(0) 0.350477341172521 44 0.092776604887096 1.88277405868067 72 1.12238483799882 6 4 2 -6.73314068581293 LTS-019 chr7 100552868 100552894 27 * character(0) NA 0 NA 0.826 1 NA NA NA NA NA LTS-019 chr7 100552895 100612996 60102 * MUC12 0.390949587199955 26 0.0688778182447284 1.21836659797053 93 0.503699096024738 5 3 2 -6.78335231953477 LTS-019 chr7 100612997 100613018 22 * MUC12 0.347 1 NA 1.33089462186403 3 0.868719939527886 3 3 0 -5.76441019139392 LTS-019 chr7 100613019 100657228 44210 * MUC12 0.283033048968545 2 0.348603643124968 1.17674992927397 100 0.39012529391145 4 3 1 -6.76335451214953 LTS-019 chr7 100657229 100856399 199171 * c(MIR4653, MUC12, AP1S1, MUC17, MOGAT3, NAT16, SERPINE1, VGF, TRIM56, PLOD3) 0.0492338307375788 7 0.167438261543088 1.02515630230225 697 0.419235613350233 3 3 0 -6.86336730476044 LTS-019 chr7 100856400 100883147 26748 * c(ZNHIT1, CLDN15, FIS1, PLOD3) 0.493 1 NA 1.00117902069448 123 0.307847167571671 2 2 0 -5.76462336366579 LTS-019 chr7 100883148 101952374 1069227 * c(MIR4285, SH2B2, COL26A1, CUX1, FIS1, IFT22, MYL10) 0.435692244915244 28 0.0939827956224748 1.01926975275335 694 0.270358862826892 2 1 1 -6.76652344013421 LTS-019 chr7 101952375 102044983 92609 * c(LOC100289561, LOC100630923, SH2B2, SPDYE6, PRKRIP1) 0 1 NA 1.0302883862335 75 0.264396373883082 2 2 0 -5.76444716188492 LTS-019 chr7 102044984 102412901 367918 * c(RASA4B, SPDYE2B, MIR4467, LOC100630923, MIR5090, RASA4, LRWD1, FAM185A, POLR2J2, POLR2J, ALKBH4, POLR2J3, PRKRIP1, ORAI2) 0.360516327887353 14 0.170866505311493 0.976573196717334 416 0.27446522034091 2 1 1 -6.80266532063912 LTS-019 chr7 102412902 102427889 14988 * FAM185A 0.435 1 NA 0.881579781932109 9 0.0494064773081425 2 2 0 -5.86037856799774 LTS-019 chr7 102427890 107747072 5319183 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, NAMPT, LRRC17, COG5, DUS4L, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, HBP1, DNAJC2, GPR22, SLC26A4-AS1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, ORC5, SLC26A4, PIK3CG, PUS7, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, ARMC10, PMPCB) 0.457542598364481 43 0.0334338241606706 1.00100633061395 4015 0.255969626215493 2 1 1 -7.65842051969677 LTS-019 chr7 107747073 107747719 647 * LAMB4 NA 0 NA 1.401 1 NA NA NA NA NA LTS-019 chr7 107747720 123301940 15554221 * c(MIR3666, AASS, FAM3C, CFTR, ZNF277, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf66, RNF133, THAP5, TFEC, LAMB4, TSPAN12, TES, LSMEM1, MDFIC, ST7-OT4, IFRD1, KCND2, RNF148, FEZF1, LINC00998, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, PNPLA8, TAS2R16, WNT16, LSM8, GPR85, ING3, LRRN3, PPP1R3A, ANKRD7, PTPRZ1, TMEM168, SLC13A1, WNT2, ST7, CPED1, CAPZA2, IMMP2L, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, NA NA NA NA NA NA NA NA NA LTS-019 ST7-OT3, CADPS2, FOXP2, DOCK4) 0.455409472913298 104 0.0751460607871745 1.05176258690831 5422 0.381161206093189 2 1 1 -6.91923058933354 LTS-019 NA NA NA NA LTS-019 chr7 123301941 123304323 2383 * LMOD2 0.132 1 NA 1.06847699340342 45 0.180196082873153 2 2 0 -5.76444862132613 LTS-019 chr7 123304324 127528007 4223684 * c(C7orf77, ZNF800, HYAL4, POT1, HYALP1, SND1, GPR37, GRM8, FSCN3, ARF5, PAX4, SPAM1, MIR592, TMEM229A, GCC1, WASL) 0.42029429698732 12 0.136704808055366 1.04021598210248 986 0.288614441762115 2 1 1 -6.73439651663004 LTS-019 chr7 127528008 127528013 6 * SND1 NA 0 NA 1.489 1 NA NA NA NA NA LTS-019 chr7 127528014 138529202 11001189 * c(LOC100130705, LOC100130880, SMKR1, MIR4468, RNA5SP244, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, TMEM213, MGC27345, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, SLC13A4, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, WDR91, HILPDA, MESTIT1, TSPAN33, AGBL3, FAM71F2, STRA8, LOC349160, IMPDH1, IRF5, KCP, LINC-PINT, FAM180A, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, NA NA NA NA NA NA NA NA NA LTS-019 LOC407835, MEST, MKLN1, AKR1B15, MIR335, CNOT4, NRF1, ATP6V0A4, CPA4, ZC3HC1, PODXL, CHCHD3, RBM28, TMEM140, METTL2B, AKR1B10, MIR490, STRIP2, PTN, KIAA1549, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, CREB3L2, SMO, BPGM, AKR1D1, MIR593, UBE2H, LUZP6, C7orf49, CALD1, CALU, FAM71F1, SLC35B4, TMEM209, TRIM24, PLXNA4, DGKI, ATP6V1F, CPA5, CEP41) 0.359564476281922 156 0.0857171170315002 1.37802042756853 7586 0.380614044092602 3 2 1 -6.75903612847692 LTS-019 NA NA NA NA LTS-019 chr7 138529203 138529221 19 * KIAA1549 NA 0 NA 1.527 1 NA NA NA NA NA LTS-019 chr7 138529222 138707177 177956 * KIAA1549 0.404304511021454 2 0.0869741340859453 1.65903817917535 154 0.286569662272894 4 2 2 -6.74789626075453 LTS-019 chr7 138707178 138713715 6538 * ZC3HAV1L 0.488 1 NA 1.61601347462756 26 0.202092366544075 4 4 0 -5.76535172073426 LTS-019 chr7 138713716 140774467 2060752 * c(LOC100129148, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, C7orf55-LUC7L2, CLEC2L, FMC1, MKRN1, UBN2, DENND2A, HIPK2, KLRG2, RAB19, NDUFB2, LUC7L2, MRPS33, ZC3HAV1, PARP12, BRAF, TBXAS1, TTC26, KDM7A, SLC37A3, ADCK2, ZC3HAV1L) 0.451095612224144 76 0.0699508336105226 1.67570001016558 2266 0.463812606107767 4 2 2 -6.91674422146206 LTS-019 chr7 140774468 141720671 946204 * c(TMEM178B, OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, MGAM) 0 1 NA 1.64478598308485 739 0.298367888808672 4 4 0 -5.80634800204258 LTS-019 chr7 141720672 141765655 44984 * MGAM 0.339060040284811 6 0.178774065979008 1.78674389358793 168 0.631047425888997 6 4 2 -6.74331244547021 LTS-019 chr7 141765656 141794410 28755 * MGAM NA 0 NA 0.867797529294498 93 0.158307938713005 2 NA NA -5.78625492314443 LTS-019 chr7 141794411 141794586 176 * MGAM NA 0 NA 1.682 1 NA NA NA NA NA LTS-019 chr7 141794587 142480067 685481 * c(MOXD2P, MTRNR2L6, PRSS58, PRSS3P2, PRSS1, NA, MGAM, MGAM2) 0.364867827990607 57 0.0876992504033145 1.82883323789067 804 0.783714241542152 3 2 1 -6.77807771237191 LTS-019 chr7 142480068 142481251 1184 * PRSS3P2 0.137 1 NA 12.7994754407578 4 8.67579819094474 20 20 0 -5.76441249696734 LTS-019 chr7 142481252 142499874 18623 * PRSS3P2 0.263311148979106 13 0.121427302298905 2.45821523977819 57 4.55472648488692 12 9 3 -6.7334401802345 LTS-019 chr7 142499875 142566163 66289 * EPHB6 0.492 1 NA 1.74746909378496 89 0.351838220713224 4 4 0 -5.7645493995767 LTS-019 chr7 142566164 143305763 739600 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.472603956288529 6 0.019356308187944 1.69291877091928 1219 0.354059868011708 4 2 2 -9.84394032188821 LTS-019 chr7 143305764 143306195 432 * character(0) NA 0 NA 3.183 1 NA NA NA NA NA LTS-019 chr7 143306196 143321183 14988 * TCAF2 NA 0 NA 3.35815318659332 47 4.26307762624181 8 NA NA -5.76441042334658 LTS-019 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.789 1 NA NA NA NA NA LTS-019 chr7 143400289 143929977 529689 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.459340049162265 16 0.0408344217542014 1.73294163451246 309 0.471320454568652 4 2 2 -7.38630068544323 LTS-019 chr7 143929978 143955678 25701 * character(0) NA 0 NA 0.812 1 NA NA NA NA NA LTS-019 chr7 143955679 143981556 25878 * c(OR2A7, ARHGEF34P) NA 0 NA 1.03154240121994 65 0.512068034185513 2 NA NA -5.76441199739703 LTS-019 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 1.435 1 NA NA NA NA NA LTS-019 chr7 143982346 149588476 5606131 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, CNTNAP2, TPK1, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ARHGEF34P, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.431845964184552 87 0.114388038547469 1.68800019606245 2812 1.21733817184046 4 2 2 -6.75400340114886 LTS-019 chr7 149588477 149589344 868 * character(0) NA 0 NA 1.382 1 NA NA NA NA NA LTS-019 chr7 149589345 149990080 400736 * ACTR3C 0.462668070848053 2 0.0275771644662754 1.18858696632662 142 0.355604150576034 2 1 1 -8.20415342680679 LTS-019 chr7 149990081 150027146 37066 * c(ZBED6CL, ACTR3C, LRRC61) 0.366 1 NA 1.36324201040525 25 0.376360523080375 3 3 0 -5.76459465792724 LTS-019 chr7 150027147 156476683 6449537 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, ASB10, RNF32, GIMAP8, CRYGN, RBM33, GALNTL5, GIMAP7, GIMAP1, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, AOC1, GIMAP2, GBX1, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, NA NA NA NA NA NA NA NA NA LTS-019 TMEM176A, ACTR3B, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, LINC00244, SHH, SLC4A2, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, TMUB1, ASIC3) 0.377378540903905 161 0.0691102633028468 1.3312127629525 5157 0.335278341294238 3 2 1 -6.87284452285469 LTS-019 NA NA NA NA LTS-019 chr7 156476684 156521323 44640 * LMBR1 0 1 NA 1.20376633412333 31 0.326392701663081 2 2 0 -5.76997093315595 LTS-019 chr7 156521324 157408733 887410 * c(DNAJB6, MNX1, MIR153-2, PTPRN2, LMBR1, NOM1, MNX1-AS1, UBE3C) 0.295376811865912 17 0.116997077640728 1.33829820121594 668 0.462462659442459 4 3 1 -6.93318341176869 LTS-019 chr7 157408734 157800998 392265 * c(LOC100506585, PTPRN2) NA 0 NA 1.30942502087217 75 0.263566158677475 3 NA NA -5.78318638797143 LTS-019 chr7 157800999 157873990 72992 * PTPRN2 NA 0 NA 0.801 1 NA NA NA NA NA LTS-019 chr7 157873991 157959911 85921 * PTPRN2 0.181 1 NA 1.02134193102019 35 0.239046783508757 2 2 0 -5.76462817403725 LTS-019 chr7 157959912 158902425 942514 * c(MIR5707, LINC00689, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2) 0.138838916860443 25 0.0552635503745461 0.967087524534149 715 0.720606186491807 2 2 0 -6.73881334127326 LTS-019 chr7 158902426 159025951 123526 * VIPR2 NA 0 NA 0.938161050922715 35 0.141491859195105 2 NA NA -5.80156900031714 LTS-019 chr8 182757 280241 97485 * ZNF596 0.313 1 NA 0.622717761152411 87 0.112292275776852 1 1 0 -5.78337272200467 LTS-019 chr8 280242 22105568 21825327 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDRP, ERICH1, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, C8orf74, LGI3, DMTN, CLN8, FDFT1, NA NA NA NA NA NA NA NA NA LTS-019 FGL1, XPO7, PSD3, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FBXO25, FGF20, GFRA2, ANGPT2, FAM86B3P, XKR6, LOC286083, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, MIR320A, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, AGPAT5, CSGALNACT1, HR, MTUS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KIAA1456, DEFB135, DEFB136, DEFB134, ERICH1-AS1, SH2D4A, BLK, SFTPC, CSMD1, USP17L4, USP17L3, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR596, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MYOM2, DLGAP2, MFHAS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RP1L1, ARHGEF10, PHYHIP, KBTBD11) 0.218358123455134 338 0.0709564569942513 0.692827021675441 9576 0.854974726916174 1 1 0 -6.76549762137527 LTS-019 NA NA NA NA LTS-019 chr8 22105569 39142479 17036911 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, NKX2-6, UNC5D, LETM2, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, RHOBTB2, DDHD2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADGRA2, LSM1, NA NA NA NA NA NA NA NA NA LTS-019 ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, C8orf86, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, PLEKHA2, LINC00589, MBOAT4, PDLIM2, EBF2, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RNF122, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, ASH2L, CHMP7, BAG4, ENTPD4) 0.208996070309527 206 0.0667979010036895 0.663897331551051 11623 0.392377876755321 1 1 0 -6.746629513734 LTS-019 NA NA NA NA LTS-019 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.295 1 NA NA NA NA NA LTS-019 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.295250162027417 55 0.1319691959772 0 NA NA -5.76476068056276 LTS-019 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.644 1 NA NA NA NA NA LTS-019 chr8 39442068 43047593 3605526 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.230820802655112 51 0.0639643528175854 0.66630742972389 2798 0.21158656697471 1 1 0 -6.75386392994255 LTS-019 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 0.736423345789145 143 0.182401576940452 1 NA NA -5.79611879392289 LTS-019 chr8 47752736 47759712 6977 * LINC00293 0.492 1 NA 1.11190059532146 23 0.237203253348704 2 2 0 -5.76476847419013 LTS-019 chr8 47759713 52567361 4807649 * c(LOC100287846, CEBPD, PXDNL, SPIDR, MCM4, C8orf22, LINC00293, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.47166329186552 12 0.0255645350934738 1.04742654243479 1364 0.330200940263526 2 1 1 -8.8227890624269 LTS-019 chr8 52567362 52730441 163080 * c(PCMTD1, PXDNL) 0.222 1 NA 1.15214939390746 21 0.175716004637353 2 2 0 -5.7991239747746 LTS-019 chr8 52730442 53076716 346275 * c(PCMTD1, ST18) 0.329025080461958 11 0.170408813259067 1.08567735681712 275 0.401890396240788 3 2 1 -6.84373286103852 LTS-019 chr8 53076717 53537316 460600 * c(FAM150A, ST18, RB1CC1) 0.44 1 NA 1.06474239487302 117 0.359620080459056 2 2 0 -5.76586200148556 LTS-019 chr8 53537317 91636668 38099352 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, SBF1P1, ZFHX4-AS1, REXO1L2P, MIR2052, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, MIR5708, MIR5681A, MIR5681B, LINC00534, LOC101241902, YTHDF3-AS1, LYPLA1, NCOA2, ARFGEF1, COPS5, WWP1, STMN2, XKR4, C8orf34, TMEM68, ADHFE1, UBXN2B, DCAF4L2, RALYL, CRH, RDH10, SLC7A13, MCMDC2, CLVS1, SBSPON, CYP7A1, DECR1, CNBD1, TMEM64, NA NA NA NA NA NA NA NA NA LTS-019 E2F5, SDR16C5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, LINC00588, PTTG3P, SNORD54, STAU2, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, MRPL15, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, LOC392232, LOC401463, C8orf59, LYN, MIR124-2, MMP16, MOS, MIR2052HG, ASPH, MYBL1, NBN, OPRK1, PI15, ZC2HC1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LACTB2, RMDN1, PDE7A, ATP6V1H, PENK, PLAG1, PMP2, GDAP1, CNGB3, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, CHD7, PKIA, PAG1, C8orf44, JPH1, CPA6, PEX2, RAB2A, RP1, RPL7, ZNF704, RPS20, SDCBP, PRDM14, SNX16, SNHG6, SNORD87, SOX17, UG0898H09, FABP9, FABP12, ZBTB10, TCEA1, TCEB1, TERF1, TPD52, TTPA, OSGIN2, CA1, CA2, CA3, CA8, CHCHD7, CALB1, ZFAND1, ZFHX4, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 NSMAF, TRIM55, LRRCC1, DNAJC5B, PSKH2, RGS20, RIPK2, GGH, CPNE3, TRPA1, FAM110B, MSC, CHMP4C, KCNB2, CYP7B1, MTFR1, TGS1, TOX, RB1CC1) 0.437578570188248 264 0.0992560122242905 1.0318819636362 13509 0.307685979407965 2 1 1 -6.77243610827176 LTS-019 NA NA NA NA LTS-019 chr8 91636669 92307889 671221 * c(C8orf88, LRRC69, MIR4661, SLC26A7, TMEM64, OTUD6B, TMEM55A, NECAB1) NA 0 NA 1.06438756098533 467 0.308523517724724 2 NA NA -5.76721108279478 LTS-019 chr8 92307890 92330364 22475 * SLC26A7 NA 0 NA 0.789 1 NA NA NA NA NA LTS-019 chr8 92330365 92364100 33736 * SLC26A7 0.295 1 NA 0.74011555361594 35 0.305166685407095 1 1 0 -5.76697594545445 LTS-019 chr8 92364101 100904083 8539983 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, C8orf37-AS1, FSBP, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, C8orf37, VPS13B, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, MTERF3, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, RPL30, LINC01298, SDC2, LINC00535, STK3, MIR599, UQCRB, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, NA NA NA NA NA NA NA NA NA LTS-019 TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.242957730201086 61 0.0490124886505047 0.677340504488579 4299 0.169304150168919 1 1 0 -6.94329735064925 LTS-019 NA NA NA NA LTS-019 chr8 100904084 100904098 15 * COX6C 0.266 1 NA 0.276 1 NA NA NA NA NA LTS-019 chr8 100904099 104145625 3241527 * c(MIR4471, MIR5680, COX6C, BAALC-AS2, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.21408426773725 48 0.0631342709644514 0.641178221554223 1928 0.181334373066106 1 1 0 -6.8076486241459 LTS-019 chr8 104145626 104145669 44 * BAALC-AS2 NA 0 NA 0.595 1 NA NA NA NA NA LTS-019 chr8 104145670 104153001 7332 * c(BAALC-AS2, BAALC) NA 0 NA 0.927 1 NA NA NA NA NA LTS-019 chr8 104153002 104153137 136 * c(BAALC-AS2, BAALC) 0.113 1 NA 1.26966413246406 3 0.456934349770292 3 3 0 -5.76441444415924 LTS-019 chr8 104153138 123682818 19529681 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, MTBP, ANGPT1, MRPL13, LRP12, HAS2, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRHR, TRPS1, COL14A1, DSCC1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, NA NA NA NA NA NA NA NA NA LTS-019 EBAG9, PKHD1L1, EMC2, RIMS2) 0.128504702646153 102 0.0581825096255308 1.09579464868262 5463 1.79616997655987 2 2 0 -6.76857444968019 LTS-019 NA NA NA NA LTS-019 chr8 123682819 123683581 763 * character(0) NA 0 NA 0.66 1 NA NA NA NA NA LTS-019 chr8 123683582 126044527 2360946 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.149271437262831 43 0.0328139322974849 1.00039780780312 2069 0.304491160761324 2 2 0 -6.79735673527003 LTS-019 chr8 126044528 126051186 6659 * KIAA0196 0 1 NA 1.51798222115195 11 1.19622510043432 3 3 0 -5.76442510683493 LTS-019 chr8 126051187 126450309 399123 * c(TRIB1, NSMCE2, KIAA0196) 0.114969893431689 4 0.0389732814459684 0.9910887791435 228 0.241978875004994 2 2 0 -6.98524870664636 LTS-019 chr8 126450310 146105917 19655608 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, LINC00861, CCDC166, LOC100133669, LOC100288181, MIR1205, MIR1206, MIR1207, MIR1204, MIR1234, MIR1208, ASAP1-IT2, MIR4472-1, MIR4664, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, PTP4A3, MFSD3, ADCY8, RHPN1, TOP1MT, LYPD2, TMEM71, CYC1, FAM84B, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, EFR3A, ARC, BOP1, SCRIB, LRRC6, FBXL6, OPLAH, NA NA NA NA NA NA NA NA NA LTS-019 AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, LINC01591, C8orf31, ZFP41, GPT, COMMD5, ASAP1-IT1, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, KCNQ3, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, C8orf82, LRRC24, MYC, TONSL, CYHR1, ASAP1, FAM135B, PHF20L1, VPS28, HGH1, KCNK9, THEM6, FAM49B, PLEC, CHRAC1, EXOSC4, POU5F1B, LY6K, SLC39A4, GSDMC, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PVT1, ZNF250, ZFAT-AS1, RPL8, LINC00051, MROH6, SCX, ST3GAL1, SLA, PYCRL, LYNX1, TG, MIR661, TSTA3, CASC8, MROH1, LINC00977, OC90, LINC01300, ZNF7, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, WISP1, FOXH1, ZNF251, KIFC2, NAPRT, HPYR1, RECQL4, LRRC14, ZNF623) 0.107449534207413 305 0.051072257597617 1.33486640473549 11392 0.416208504530394 3 3 0 -6.93849151400701 LTS-019 NA NA NA NA LTS-019 chr8 146105918 146280905 174988 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF16) NA 0 NA 1.30199015580928 365 0.213676083497285 3 NA NA -5.77918475428315 LTS-019 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.352 1 NA 0.801875898517328 5 0.186849404601674 1 1 0 -5.84902679266726 LTS-019 chr9 154796 8341885 8187090 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.440640887590521 79 0.109090047342008 1.01730012242623 4003 0.262301713736334 2 1 1 -6.79473760338245 LTS-019 chr9 8341886 14398521 6056636 * c(LINC00583, LURAP1L, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.469246012960483 5 0.0180969610708539 1.13323741322482 823 0.281676848695073 2 1 1 -10.2030582586437 LTS-019 chr9 14398522 34833949 20435428 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, RRAGA, CCL27, PSIP1, PTENP1, DCTN3, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, FAM219A, DDX58, SLC24A2, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, NA NA NA NA NA NA NA NA NA LTS-019 ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, ENHO, LOC389705, FAM205BP, HACD4, LINC01242, TMEM215, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, NOL6, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, C9orf24, ADAMTSL1, CER1, PLAA) 0.423990458900371 191 0.114540902288447 1.03817761567591 8430 0.29683865368311 2 1 1 -6.73736695910114 LTS-019 NA NA NA NA LTS-019 chr9 34833950 34835095 1146 * FAM205BP 0.29626978183029 2 0.183847763108502 0.549266932900701 52 0.730365625703766 4 3 1 -6.73539076734923 LTS-019 chr9 34835096 36215581 1380486 * c(GNE, MIR4667, CREB3, UNC13B, CLTA, C9orf131, GLIPR2, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, RECK, HINT2, PIGO, ARHGEF39, CCIN, LINC00950, CD72, RGP1, RUSC2) 0.459304032292275 53 0.0332756225141021 1.02851115815651 3059 0.245020473560458 2 1 1 -7.66754996389138 LTS-019 chr9 36215582 36390652 175071 * c(GNE, RNF38) NA 0 NA 0.948681848763735 240 0.186125224226715 2 NA NA -5.78851775640194 LTS-019 chr9 36390653 36597142 206490 * c(RNF38, MELK) 0.277 1 NA 0.725410633277412 35 0.184903436074803 1 1 0 -5.79272604859775 LTS-019 chr9 36597143 37707617 1110475 * c(EBLN3P, MIR4540, MIR4475, MIR4476, FRMPD1, FBXO10, TOMM5, PAX5, POLR1E, ZCCHC7, GRHPR, MELK, ZBTB5) 0.108800099504866 10 0.0930469415581906 0.673120276606905 800 0.494943726006633 2 2 0 -7.27106204755239 LTS-019 chr9 37707618 37715724 8107 * FRMPD1 0.299 1 NA 0.749786882387716 11 0.0701246941331848 1 1 0 -5.77901278245945 LTS-019 chr9 37715725 40503123 2787399 * c(FAM95C, FAM201A, TRMT10B, ALDH1B1, FRMPD1, ANKRD18A, IGFBPL1, FAM74A1, ZNF658B, EXOSC3, NA, SHB, NA, DCAF10, CNTNAP3, SLC25A51) 0.274557342318124 16 0.110124304765115 0.66329809271176 769 0.184103270253512 1 1 0 -6.88168554343266 LTS-019 chr9 40503124 44175697 3672574 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.65113254427063 55 0.34740612471316 1 NA NA -5.77128714750107 LTS-019 chr9 65602571 65602660 90 * LOC286297 0.288 1 NA 1.06525327967189 2 0.0572756492761105 2 2 0 -5.7644216078336 LTS-019 chr9 65602661 68433556 2830896 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.343750684434043 26 0.0813815703952682 1.05636272240452 67 0.435949828855408 2 1 1 -7.1566039686215 LTS-019 chr9 68433557 71145692 2712136 * c(FRG1HP, LOC100133920, FOXD4L3, LOC440896, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.464 1 NA 0.99564862151259 92 0.228257129414447 2 2 0 -5.81652128094577 LTS-019 chr9 71145693 86592026 15446334 * c(VPS13A-AS1, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, RASEF, PRUNE2, TMEM252, ALDH1A1, SMC5, VPS13A, TMEM2, FXN, MAMDC2, FRMD3, GCNT1, OSTF1, GNAQ, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, MIR204, MIR7-1, IDNK, FOXB2, C9orf135-AS1, PCA3, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, KIF27, PRKACG, RORB, RPSAP9, NA NA NA NA NA NA NA NA NA LTS-019 KLF9, TLE1, TLE4, ZFAND5, TRPM3, GKAP1, PIP5K1B, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14) 0.441715877931494 123 0.0786973004236004 1.02858836770609 6466 0.253668678701632 2 1 1 -6.81505054615225 LTS-019 NA NA NA NA LTS-019 chr9 86592027 87429642 837616 * c(HNRNPK, NTRK2, SLC28A3, RMI1) 0 1 NA 1.04295163162348 353 0.380569118107298 2 2 0 -5.76451097407951 LTS-019 chr9 87429643 88968178 1538536 * c(AGTPBP1, LOC389765, C9orf153, NTRK2, GOLM1, NAA35, ZCCHC6, ISCA1) 0.348871713288318 5 0.203109083991829 1.00533494669403 902 0.247750081826728 2 1 1 -6.809485809783 LTS-019 chr9 89559236 103349484 13790249 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, LOC100507346, MSANTD3-TMEFF1, MIR4670, NAMA, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SEC61B, SLC35D2, CKS2, COL15A1, PTPDC1, ANKRD19P, CTSL, CTSV, CTSLP8, NXNL2, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, NA NA NA NA NA NA NA NA NA LTS-019 ZNF782, LOC158434, LOC158435, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, FANCC, FBP1, ZNF510, HABP4, FOXE1, ERP44, FAM120A, BICD2, TDRD7, CDK20, GAS1, INVS, C9orf47, SPATA31E1, LOC286238, LOC286359, MIR4290HG, HSD17B3, IARS, GAS2L1P2, LINC01501, MURC, ERCC6L2, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 C9orf129, NCBP1, NFIL3, NINJ1, ROR2, LOC494127, OMD, OGN, TRMO, PHF2, SHC3, NANS, NUTM2F, DIRAS2, ASPN, TEX10, AUH, STX17, NOL8, TBC1D2, HEMGN, BARX1, PTCH1, LOC100499484-C9ORF174, SPATA31C2, IPPK, WNK2, SYK, TGFBR1, TMOD1, CORO2A, XPA, SECISBP2, GALNT12, NR4A3, ZNF484, CARD19, MFSD14C, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, GABBR2, TRIM14) 0.349434705331987 189 0.0868384763376487 1.34584922372133 9455 0.517973249760898 3 2 1 -6.81528542308708 LTS-019 NA NA NA NA LTS-019 chr9 103349485 110045881 6696397 * c(MIR548Q, SMC2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, FKTN, ALDOB, SLC44A1, NIPSNAP3A, OR13C9, OR13D1, NA, MURC, OR13C2, MRPL50, PLPPR1, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, ZNF462, RAD23B, TAL2, ZNF189, FSD1L, TMEM246) 0.346280207418153 75 0.0960054465421924 1.4443410220572 2730 0.374967852554874 3 2 1 -6.76685471843461 LTS-019 chr9 110045882 117085526 7039645 * c(FAM225B, MIR3134, MIR4668, ACTL7B, ACTL7A, AKAP2, KIF12, PALM2, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, ALAD, PTGR1, FKBP15, KIAA0368, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, OR2K2, GNG10, FAM225A, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, ORM1, POLE3, EPB41L4B, BSPRY, DNAJC25, FAM206A, DNAJC25-GNG10, PTPN3, SLC46A2, INIP, RAD23B, RGS3, MIR455, SUSD1, NA NA NA NA NA NA NA NA NA LTS-019 LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, HDHD3, HSDL2, IKBKAP, COL27A1, CTNNAL1, PRPF4, KLF4, PTBP3) 0.34800966728489 165 0.0954036586988486 1.38185465446911 6207 1.12648549244252 3 2 1 -6.74917728350584 LTS-019 NA NA NA NA LTS-019 chr9 117085527 117085561 35 * ORM1 NA 0 NA 0.432 1 NA NA NA NA NA LTS-019 chr9 117085562 117089956 4395 * ORM1 0.335089819915913 3 0.13804830072599 0.480993149510991 40 0.569405447903832 6 4 2 -6.76196379472131 LTS-019 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.166 1 NA NA NA NA NA LTS-019 chr9 117092173 127910339 10818167 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100288842, MIR181A2HG, LOC100505478, MIR4478, ZBTB6, NEK6, CNTRL, RPL35, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, BRINP1, OLFML2A, MEGF9, TMEM268, STOM, TRIM32, ASTN2, RABGAP1, NR5A1, PSMD5-AS1, MORN5, OR1L4, WHRN, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, GGTA1P, GOLGA1, GPR21, CRB2, SCAI, GSN, TNC, ADGRD2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, NA NA NA NA NA NA NA NA NA LTS-019 WDR38, MIR147A, MIR181A2, MIR181B2, NDUFA8, ORM1, ORM2, DEC1, PAPPA, PDCL, RAB14, RC3H2, STRBP, PPP6C, CDK5RAP2, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, LINC00474, SNORD90, MIR601, TLR4, TRAF1, C5, AKNA, MIR600HG, ARPC5L, MRRF, RBM18, LHX2, TNFSF8, ATP6V1G1, TNFSF15) 0.357757741901767 155 0.0917622417289481 1.37356477245642 6865 0.351029043028718 3 2 1 -6.77239421626162 LTS-019 NA NA NA NA LTS-019 chr9 127910340 127911135 796 * PPP6C 0.302217685672402 3 0.00960902353693306 1.08049590130117 21 0.193775766335854 17 12 5 -6.77662274515632 LTS-019 chr9 127911136 127951863 40728 * PPP6C 0.458 1 NA 1.15167544873099 51 0.216837065422811 2 2 0 -5.77008604401919 LTS-019 chr9 127951864 136133506 8181643 * c(LOC100272217, SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, CELP, POMT1, USP20, SLC27A4, SPACA9, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, AK8, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, ABL1, PHYHD1, CIZ1, GAPVD1, GBGT1, SNORA65, SNORD62A, TRUB2, ST6GALNAC4, NA NA NA NA NA NA NA NA NA LTS-019 GLE1, TOR1B, TOR2A, ABO, GOLGA2, CFAP157, FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, OBP2B, ST6GALNAC6, HSPA5, QRFP, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN2, FAM102A, LMX1B, ZBTB34, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, PPP6C, LRRC8A, BARHL1, SH3GLB2, DOLPP1, GPR107, RALGDS, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TSC1, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, URM1, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C5, GTF3C4, MED27, PTGES, RALGPS1) 0.439365854704816 170 0.0883615496289917 0.994173686670749 11634 0.294007242930371 2 1 1 -6.8816365509321 LTS-019 NA NA NA NA LTS-019 chr9 136133507 136135237 1731 * ABO 0.056 1 NA 1.68590015135367 3 1.74262244906922 4 4 0 -5.76441123310764 LTS-019 chr9 136135238 136298702 163465 * c(ADAMTS13, STKLD1, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, REXO4, RPL7A, SURF1, SURF2, SURF4, MED22, SURF6) 0.35610858396114 10 0.191597639744219 1.02379303227379 636 0.323911798406804 2 1 1 -6.78812638009525 LTS-019 chr9 136298703 136311017 12315 * ADAMTS13 0.443 1 NA 1.00072118311905 53 0.228130457864607 2 2 0 -5.76459353523138 LTS-019 chr9 136311018 137809685 1498668 * c(RNU6ATAC, MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, DBH, SARDH, FCN1, FCN2, LINC00094, TMEM8C, RXRA, FAM163B, VAV2, BRD3, ADAMTSL2) 0.464309231960236 53 0.0235718184299152 1.02597362936624 1637 0.443550159066433 2 1 1 -8.65664922827989 LTS-019 chr9 137809686 137809861 176 * FCN1 0.451 1 NA 1.13881056236972 5 1.55939709503385 2 2 0 -5.76441051068684 LTS-019 chr9 137809862 139235415 1425554 * c(LINC01502, PPP1R26-AS1, UBAC1, OLFM1, NACC2, C9orf116, CAMSAP1, C9orf62, QSOX2, GPSM1, DKFZP434A062, OBP2A, GLT6D1, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, KCNT1, LHX3, C9orf69, PPP1R26) 0.376753792806967 43 0.161178096333036 1.02381702815665 1456 1.96657774016042 3 2 1 -6.76006223057855 LTS-019 chr9 139235416 139235526 111 * GPSM1 0.451 1 NA 0.882648049823006 3 0.342494282190715 2 2 0 -5.76442480843667 LTS-019 chr9 139235527 141070283 1834757 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, LCN8, FAM69B, SLC34A3, C9orf163, MAMDC4, LCN6, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, MIR126, LCN10, STPG3, NRARP, NOTCH1, NA NA NA NA NA NA NA NA NA LTS-019 EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.44947734020231 151 0.0402043982965061 0.991887932974104 5537 0.252111139012925 2 1 1 -7.19387129689823 LTS-019 NA NA NA NA LTS-019 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.699770440468419 5 0.24082088779838 1 NA NA -5.76445238755299 LTS-019 chr10 94832 94870 39 * TUBB8 0.419 1 NA 1.198 1 NA NA NA NA NA LTS-019 chr10 94871 14974843 14879973 * c(LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, UCMA, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, AKR1C8P, IDI1, TUBB8, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, GATA3-AS1, NA NA NA NA NA NA NA NA NA LTS-019 PRR26, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, ADARB2-AS1, DCLRE1C, SUV39H2, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, PRPF18, AKR1C3, CDC123, IDI2, USP6NL) 0.444028287911071 168 0.0794066944158338 0.998839962346413 6995 0.287475034113592 2 1 1 -6.96640760650517 LTS-019 NA NA NA NA LTS-019 chr10 14974844 14987138 12295 * DCLRE1C 0 1 NA 1.13854064039046 27 0.907536791810684 2 2 0 -5.7644877332847 LTS-019 chr10 14987139 15256194 269056 * c(PPIAP30, RPP38, C10orf111, FAM171A1, ACBD7, OLAH, DCLRE1C, MEIG1, NMT2) 0.203149586877256 9 0.216063326622338 1.01242135798448 347 0.43575379087366 2 2 0 -6.78384082927428 LTS-019 chr10 15256195 15263100 6906 * FAM171A1 0.45 1 NA 1.05582123154897 19 0.253936171010292 2 2 0 -5.7644301606781 LTS-019 chr10 15263101 17813397 2550297 * c(ST8SIA6-AS1, TRDMT1, FAM171A1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.444994699408871 39 0.0554770988969709 0.978287233904824 1400 0.26847253315643 2 1 1 -6.98280918446168 LTS-019 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.003 1 NA NA NA NA NA LTS-019 chr10 17842448 17898391 55944 * c(MRC1, NA, TMEM236) NA 0 NA 0.391108126597103 45 0.315754752357528 0 NA NA -5.79406608040765 LTS-019 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 1.76 1 NA NA NA NA NA LTS-019 chr10 17905571 18254637 349067 * c(SLC39A12, MRC1, NA, TMEM236) 0.27 1 NA 0.80713957624132 126 0.541660419187415 1 1 0 -5.79153271446381 LTS-019 chr10 18254638 18266836 12199 * SLC39A12 NA 0 NA 1.156 1 NA NA NA NA NA LTS-019 chr10 18266837 29170151 10903315 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, GPR158, ARHGAP21, NA NA NA NA NA NA NA NA NA LTS-019 DNAJC1, LINC00264, BMI1, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.442595942286101 114 0.0994071594056288 1.04101296002305 5090 0.316484671727317 2 1 1 -6.78190001079105 LTS-019 NA NA NA NA LTS-019 chr10 29170152 38671982 9501831 * c(MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, ITGB1, KIF5B, PTCHD3P1, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ANKRD30A, ARHGAP12) 0.428561162246762 74 0.0917566855181817 0.982861122625318 3200 0.528261417908031 2 1 1 -6.80627221867926 LTS-019 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 0.841068935689473 9 0.130678783451808 2 NA NA -5.8683175715996 LTS-019 chr10 42379879 47000547 4620669 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, LINC00839, ZFAND4, GPRIN2, BMS1) 0.418959785899317 92 0.0974554230609783 1.02535694336991 1986 0.390257767315028 2 1 1 -6.73683025187532 LTS-019 chr10 47000548 47086915 86368 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, GPRIN2) 0.263 1 NA 1.13081647346373 7 0.882288015818612 2 2 0 -5.76490560966977 LTS-019 chr10 47086916 48438504 1351589 * c(ZNF488, CTSLP2, NA, PTPN20, GDF2, GDF10, GLUD1P7, FAM35DP, NPY4R, NA, RBP3, LINC00842, NA, NA, HNRNPA1P33) 0.326544508858729 7 0.127354398656438 1.04613601134844 437 0.393594059493897 2 1 1 -7.00585734847728 LTS-019 chr10 48438505 48739488 300984 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) 0.414 2 0 0.362862832516085 39 0.340653581146857 0 0 0 -Inf LTS-019 chr10 49364631 49643203 278573 * c(FRMPD2, NA, MAPK8, FRMPD2B) 0 2 0 1.11731887672702 180 0.52851940866168 0 0 0 -Inf LTS-019 chr10 49643204 49643570 367 * NA 0.471 1 NA 1.2221123264645 7 0.278386935243531 3 3 0 -5.76446853899532 LTS-019 chr10 49643571 53893717 4250147 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MSMB, LRRC18, NA, OGDHL, PRKG1, ASAH2, WDFY4, ARHGAP22, DRGX, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.456948936063015 63 0.0658048986795069 1.01810430161485 2392 0.261421259149311 2 1 1 -6.98753807053092 LTS-019 chr10 53893718 53921558 27841 * PRKG1 NA 0 NA 1.751 1 NA NA NA NA NA LTS-019 chr10 53921559 63168472 9246914 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, IPMK, LINC01553, ANK3, MBL2, CISD1, PRKG1, PCDH15, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.447400901914533 65 0.088801740064379 1.09154758024764 2498 0.289932483777668 2 1 1 -6.98152283922515 LTS-019 chr10 63168473 69934258 6765786 * c(MIR1296, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, CTNNA3, NRBF2, ANXA2P3, LRRTM3, DNAJC12, ARID5B, MYPN, ADO, JMJD1C-AS1) 0.449491476411535 31 0.0791646168382048 0.997407063162378 1917 0.23525994973442 2 1 1 -6.95996561417993 LTS-019 chr10 69934259 70042928 108670 * c(ATOH7, PBLD, MYPN) 0 1 NA 1.03661257850192 129 0.213082929933558 2 2 0 -5.76441084985302 LTS-019 chr10 70042929 71055459 1012531 * c(DNA2, STOX1, KIF1BP, HK1, HNRNPH3, SRGN, RUFY2, CCAR1, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, DDX21, VPS26A) 0.333854875419571 15 0.223123561753401 0.99528249992485 1549 0.329223732067093 2 1 1 -6.81970903463965 LTS-019 chr10 71055460 71060610 5151 * HK1 0.471 1 NA 1.0616961609244 7 0.30983705394933 2 2 0 -5.76442746505275 LTS-019 chr10 71060611 74671611 3611001 * c(MIR1256, MIR4676, MICU1, ANAPC16, COL13A1, ADAMTS14, OIT3, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1, MCU, CHST3, SPOCK2) 0.450146349210155 135 0.055697454272009 1.01573506548394 3636 0.288489377719734 2 1 1 -6.98267353427552 LTS-019 chr10 74671612 74767562 95951 * c(OIT3, P4HA1, PLA2G12B) 0.238 1 NA 1.03285964364572 87 0.142471188531627 2 2 0 -5.76446337620424 LTS-019 chr10 74767563 75559666 792104 * c(ECD, CHCHD1, MSS51, CFAP70, USP54, FUT11, ZSWIM8, DNAJC9, NUDT13, GLUD1P3, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1, AGAP5, BMS1P4, SYNPO2L, SEC24C) 0.166713410784976 11 0.155462769585752 1.0024236245255 1605 0.228394449144586 2 2 0 -6.76093540738337 LTS-019 chr10 75559667 75671875 112209 * c(ZSWIM8, C10orf55, PLAU, CAMK2G, NDST2) 0.416 1 NA 0.974306015109728 301 0.196578943646748 2 2 0 -5.77125012400707 LTS-019 chr10 75671876 82369202 6697327 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, PPIF, POLR3A, COMTD1, ADK, SAMD8, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, KAT6B, ZNF503-AS1, AP3M1, ZMIZ1-AS1, ANXA11, DUPD1, KCNMA1, SH2D4B, C10orf55, LINC00595, MAT1A, LINC00857, DUSP13, PLAU, ZMIZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, VCL, VDAC2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, DLG5) 0.435498098636691 87 0.0890295011310217 1.02311771677513 3296 0.29311690975861 2 1 1 -6.77560192681781 LTS-019 chr10 82369203 82904413 535211 * SH2D4B NA 0 NA 1.08809758336108 65 0.193697831686367 2 NA NA -5.7838758081098 LTS-019 chr10 83635035 84744926 1109892 * NRG3 0.096 1 NA 0.768294691105383 83 0.164749437086371 1 1 0 -6.24675081877199 LTS-019 chr10 84744927 88493858 3748932 * c(GRID1-AS1, NRG3, LDB3, LINC00858, WAPL, LRIT1, GHITM, GRID1, LRIT2, C10orf99, MIR346, CCSER2, RGR, CDHR1, OPN4) 0.178186767835598 17 0.112662921245321 0.695298903359462 1193 0.351081620435233 1 1 0 -6.84971176572317 LTS-019 chr10 88493859 88964698 470840 * c(ADIRF, LDB3, AGAP11, GLUD1, FAM35A, FAM25A, BMPR1A, SNCG, MMRN2) 0.481 1 NA 0.660527199464811 369 0.164906108203425 1 1 0 -5.76467967529849 LTS-019 chr10 88964699 89469104 504406 * c(MIR4678, LINC00863, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, PAPSS2, MINPP1) 0.221816779542129 4 0.0460615530205687 0.688330584081223 157 0.161076050228488 1 1 0 -6.75036580551385 LTS-019 chr10 89469105 89472773 3669 * PAPSS2 NA 0 NA 0.34 1 NA NA NA NA NA LTS-019 chr10 89472774 89574554 101781 * c(ATAD1, PAPSS2) 0.458185918258295 5 0.0478664809652851 0.303057366002616 217 0.103493695456035 0 0 0 -7.20514691118443 LTS-019 chr10 89574555 89731742 157188 * c(KLLN, CFL1P1, PTEN, ATAD1) NA 0 NA 0.317355163036354 235 0.0951626067908181 0 NA NA -5.84501127877799 LTS-019 chr10 89731743 90033622 301880 * RNLS NA 0 NA 0.758 1 NA NA NA NA NA LTS-019 chr10 90033623 90122512 88890 * RNLS 0.246 1 NA 0.606412763251841 55 0.142461556040551 1 1 0 -5.78588988460646 LTS-019 chr10 90122513 106166570 16044058 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, GSTO2, NA NA NA NA NA NA NA NA NA LTS-019 SFR1, CALHM3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, DNTT, FGF8, CPEB3, NT5C2, PDCD11, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, R3HCC1L, POLL, GOT1, BLOC1S2, FLJ37201, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, CC2D2B, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf62, IFIT1B, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, PANK1, EXOC6, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, STAMBPL1, SEMA4G, ALDH18A1, ACTA2, RBP4, AVPI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 HPSE2, SCD, MMS19, SFRP5, NOC3L, LIPK, LIPN, LINC00865, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PKD2L1, BTAF1, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, GSTO1, ENTPD1, KIF20B, SH3PXD2A, SLK, ZNF518A) 0.219902183999663 326 0.0736773905371028 0.662322428700484 17568 0.199433257397086 1 1 0 -6.73447761886138 LTS-019 NA NA NA NA LTS-019 chr10 106166571 106918725 752155 * c(CFAP58, SORCS3) 0 1 NA 0.676504711592192 103 0.269415575871864 1 1 0 -5.766608521668 LTS-019 chr10 106918726 108924301 2005576 * c(SORCS1, SORCS3) 0.248283893005825 2 0.053033008588991 0.699461104254996 279 0.135773136144801 1 1 0 -7.08251292052106 LTS-019 chr10 109654604 113910321 4255718 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, GPAM, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.13294325686956 22 0.0337265551084086 0.979781143882215 1119 0.244196745097997 2 2 0 -6.89802656123297 LTS-019 chr10 113910322 120096015 6185694 * c(MIR2110, MIR4295, MIR3663, MIR4483, VAX1, PDZD8, PNLIPRP3, TRUB1, VTI1A, C10orf82, ADRB1, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, ATRNL1, GFRA1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, FAM204A, ZDHHC6, SLC18A2, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.137665606501195 105 0.0536036908958299 1.06172803318354 4610 0.328383253209315 2 2 0 -6.75302467734409 LTS-019 chr10 120096016 120352963 256948 * c(PRLHR, FAM204A) NA 0 NA 0.742 1 NA NA NA NA NA LTS-019 chr10 120352964 121685725 1332762 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, INPP5F, PRLHR, GRK5, NANOS1, RGS10, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.140972067942643 31 0.0386134134585992 0.967199337550552 1294 0.236052531182024 2 2 0 -6.80273745371644 LTS-019 chr10 121685726 121689106 3381 * SEC23IP NA 0 NA 1.251 1 NA NA NA NA NA LTS-019 chr10 121689107 134693137 13004031 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, NA NA NA NA NA NA NA NA NA LTS-019 C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.164068210778503 165 0.0778009156975051 1.04196141152928 6469 0.366279688437973 2 2 0 -6.78955568200826 LTS-019 NA NA NA NA LTS-019 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.513 1 NA NA NA NA NA LTS-019 chr10 134694406 134756359 61954 * CFAP46 0.141625841288473 7 0.0240891202472343 0.58054255368318 172 0.571207980883969 2 2 0 -6.77292801192706 LTS-019 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.777 1 NA NA NA NA NA LTS-019 chr10 134884462 135381888 497427 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.138529474362951 74 0.0634835232116429 1.0460338811952 1403 0.484094548884501 2 2 0 -6.73359680283171 LTS-019 chr10 135381889 135437421 55533 * c(SPRNP1, SYCE1) NA 0 NA 0.457 1 NA NA NA NA NA LTS-019 chr10 135437422 135473026 35605 * FRG2B 0.311336963528444 2 0.0657609306503489 0.384400635181846 44 1.35543148462537 7 5 2 -6.78320277873472 LTS-019 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.232 1 NA NA NA NA NA LTS-019 chr11 193025 193096 72 * SCGB1C1 0.418 1 NA 0.395 1 NA NA NA NA NA LTS-019 chr11 193097 1025332 832236 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.24805548263184 165 0.0765920128834998 0.648131649458723 3098 0.337939089433712 1 1 0 -6.82031152167107 LTS-019 chr11 1025333 1213023 187691 * c(MUC2, MUC6, MUC5B) 0.222851104156359 16 0.117772379331205 0.715893373555555 426 0.273352424936608 1 1 0 -6.74220579865873 LTS-019 chr11 1213024 1213174 151 * MUC5B 0.468 1 NA 0.899486484696849 3 0.214479214222109 2 2 0 -5.76444991597603 LTS-019 chr11 1213175 1213566 392 * MUC5B 0.41950974444055 15 0.0527571254496896 1.02800724663547 24 0.386081954204439 2 1 1 -6.73876395078091 LTS-019 chr11 1213567 1215698 2132 * MUC5B 0.21 1 NA 0.692814660858127 27 0.143001832913163 1 1 0 -5.76452376156967 LTS-019 chr11 1215699 5776808 4561110 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, TRIM22, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, CTSD, DUSP8, OR52A1, TOLLIP-AS1, OR51F1, PGAP2, OR51B5, OR51V1, H19, MRGPRG-AS1, C11orf21, TRPM5, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, KRTAP5-AS1, NA NA NA NA NA NA NA NA NA LTS-019 OR52B6, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, TRIM6-TRIM34, NAP1L4, NUP98, SLC22A18, SLC22A18AS, UBQLN3, IGF2-AS, TRIM34, TOLLIP, TRIM68, KCNQ1DN, MMP26, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, MOB2, CARS, TRIM5, SYT8, BRSK2, CD81) 0.228195994018729 223 0.060808470299743 0.692884285923034 5668 0.268051073772546 1 1 0 -6.81528242817927 LTS-019 NA NA NA NA LTS-019 chr11 5776809 5809500 32692 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) NA 0 NA 1.15051176411611 39 0.348753007039407 2 NA NA -5.7661385926323 LTS-019 chr11 5809501 5809505 5 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.636 1 NA NA NA NA NA LTS-019 chr11 5809506 7794982 1985477 * c(TRIM22, TRIM3, PRKCDBP, TPP1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, TIMM10B, RBMXL2, OR10A4, OLFML1, APBB1, HPX, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, CYB5R2, MRPL17, SMPD1, TAF10, ZNF214, ZNF215, OR52N1, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, CCKBR) 0.22284206194027 113 0.0628118654089875 0.663818378879353 3379 0.188313994206619 1 1 0 -6.73520003704334 LTS-019 chr11 7794983 7794988 6 * character(0) NA 0 NA 0.553 1 NA NA NA NA NA LTS-019 chr11 7794989 7847092 52104 * c(OR5P2, OR5P3) NA 0 NA 0.312459075102481 40 0.240715258962609 0 NA NA -5.76728542183298 LTS-019 chr11 7847093 19247405 11400313 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, USH1C, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, OR5P3, CYP2R1, COPB1, ADM, PLEKHA7, SPTY2D1, TMEM86A, LDHAL6A, EIF4G2, RRAS2, SWAP70, DENND5A, MRGPRX1, SERGEF, OR5E1P, OR10A3, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, LOC283299, GTF2H1, NLRP10, OTOG, GALNT18, NCR3LG1, KCNC1, KCNJ11, NA NA NA NA NA NA NA NA NA LTS-019 INSC, OR10A6, LDHA, LDHC, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, LOC644656, RASSF10, STK33, ST5, SNORA23, SNORA3B, ABCC8, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, CALCA, RIC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CALCB, E2F8, CSRP3, SBF2, FAR1, BTBD10, PTPN5, MICALCL, EIF3F, MICAL2, CTR9, TRIM66) 0.212136846290364 184 0.0747633645146917 0.665343565707944 9518 0.213545658083305 1 1 0 -6.73888354337048 LTS-019 NA NA NA NA LTS-019 chr11 19247406 26702700 7455295 * c(LOC100126784, CCDC179, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, DBX1, MUC15, SLC5A12, ANO5, FANCF, SVIP, GAS2, LUZP2, NAV2-AS4, NELL1, SLC17A6, ANO3, E2F8, NAV2, SLC6A5) 0.213710561223695 39 0.0780070414483178 0.706010774159565 2010 0.179134238244941 1 1 0 -7.22154108048199 LTS-019 chr11 26702701 27149323 446623 * c(SLC5A12, FIBIN, BBOX1) NA 0 NA 0.732378661448722 179 0.135046080010005 1 NA NA -5.90276435491071 LTS-019 chr11 27149324 27360090 210767 * c(BBOX1, CCDC34) NA 0 NA 1.107 1 NA NA NA NA NA LTS-019 chr11 27360091 28057957 697867 * c(LINC00678, BDNF-AS, LIN7C, LGR4, BDNF, KIF18A, CCDC34) 0.438 1 NA 1.08552087717135 513 0.270617311917254 2 2 0 -5.776169802335 LTS-019 chr11 28057958 34500431 6442474 * c(C11orf91, DCDC5, HIPK3, EIF3M, DNAJC24, ARL14EP, CSTF3, METTL15, IMMP1L, ELF5, FSHB, KIAA1549L, ABTB2, FBXO3, ELP4, LINC00294, CSTF3-AS1, DCDC1, KCNA4, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, MIR610, MPPED2, WT1, PRRG4, QSER1, KIF18A, CAT, DEPDC7, CD59) 0.419627035254854 63 0.132774263772494 1.05405097109824 3586 0.284296102127918 2 1 1 -6.74616060381931 LTS-019 chr11 34500432 34500457 26 * ELF5 NA 0 NA 0.733 1 NA NA NA NA NA LTS-019 chr11 34500458 48328644 13828187 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, C11orf74, OR4X2, OR4B1, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, FJX1, OR4S1, PAMR1, EHF, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, OR4X1, ARHGAP1, HNRNPKP3, FAM180B, LRP4, NA NA NA NA NA NA NA NA NA LTS-019 MIR129-2, MDK, MYBPC3, NDUFS3, APIP, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, PTPRJ, RAG1, RAG2, RAPSN, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, AGBL2, PRR5L, PDHX, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, CD44, ATG13, CKAP5) 0.4297054988628 141 0.109893405108415 1.00975746438867 7416 0.370950738987778 2 1 1 -6.78821040084926 LTS-019 NA NA NA NA LTS-019 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.927688879151066 4 0.0876484455081777 2 NA NA -5.78168763005499 LTS-019 chr11 48346420 48346423 4 * character(0) 0.35 1 NA 2.926 1 NA NA NA NA NA LTS-019 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.307768585374972 102 0.0944950003248372 1.99461782364585 184 1.35807972362708 7 5 2 -6.73501636818347 LTS-019 chr11 48387984 48387985 2 * character(0) NA 0 NA 1.001 1 NA NA NA NA NA LTS-019 chr11 48387986 48388614 629 * character(0) 0.225009736227405 3 0.158544420694433 1.6481726039679 5 0.780157804549823 10 8 2 -6.73374517452062 LTS-019 chr11 48388615 48388641 27 * character(0) 0.399 1 NA 2.273 1 NA NA NA NA NA LTS-019 chr11 48388642 51527499 3138858 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.43800211681796 20 0.0332967518567581 1.07767569147326 476 0.494859146445608 2 1 1 -7.03263408665062 LTS-019 chr11 51527500 51527703 204 * character(0) NA 0 NA 0.978306300701347 3 0.0565803263805832 2 NA NA -5.76454076664929 LTS-019 chr11 55035776 55135435 99660 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) 0.374 1 NA 0.834635887203511 27 0.211670832451099 2 2 0 -5.82684575236993 LTS-019 chr11 55135436 55340582 205147 * c(OR4C16, OR4C15, OR4A15) 0.465349143737689 6 0.0272231519115623 1.13695864807965 71 0.388905443862121 2 1 1 -8.33512059661343 LTS-019 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.535 1 NA NA NA NA NA LTS-019 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.573531108059387 67 0.0670895699981211 1 NA NA -5.90025559365187 LTS-019 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.018 1 NA NA NA NA NA LTS-019 chr11 55432533 56468835 1036303 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, TRIM51) 0.36647189443877 64 0.116723931524243 1.15357143301614 922 0.462332224866101 3 2 1 -6.84917065000913 LTS-019 chr11 56468836 56468883 48 * OR8U8 NA 0 NA 0.906 1 NA NA NA NA NA LTS-019 chr11 56468884 57970981 1502098 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, ZDHHC5, TIMM10, SELENOH, OR9G4, SLC43A3, RTN4RL2, OR5AK2, MIR130A, P2RX3, OR8U8, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.358701420260846 20 0.183260097014857 1.04507624883965 1793 0.274158518417101 2 1 1 -6.78851177249274 LTS-019 chr11 57970982 57971195 214 * OR1S2 0.477 1 NA 1.15295035386125 4 0.433740705952301 2 2 0 -5.76441771855463 LTS-019 chr11 57971196 62375773 4404578 * c(MIR1908, MIR3162, MIR4488, GLYAT, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, CNTF, DDB1, EEF1G, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, FTH1, EML3, TKFC, DKFZP434K028, GIF, PRPF19, LOC283194, LINC00301, MS4A10, INCENP, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, NA NA NA NA NA NA NA NA NA LTS-019 LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, OR5B3, OSBP, MS4A13, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, PGA3, PGA4, TUT1, STX3, MIR611, TCN1, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SYT7, CD5, MTA2, GLYATL1, CD6, MS4A1, MS4A3, LPXN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 FADS2) 0.457673798218881 88 0.0627665798617737 1.02794026655831 6382 0.247451030377916 2 1 1 -7.00965432800075 LTS-019 NA NA NA NA LTS-019 chr11 62375774 62847335 471562 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, SLC3A2, STX5, SNORA57, METTL12, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.444766462879912 15 0.0340382138191768 0.986249201170869 1639 0.198548862782189 2 1 1 -7.19578330262541 LTS-019 chr11 62847336 62848539 1204 * SLC22A24 0 1 NA 1.00164235706806 7 1.58978507082831 2 2 0 -5.76441048495626 LTS-019 chr11 62848540 63676944 828405 * c(RTN3, PLA2G16, SLC22A9, HRASLS5, C11orf84, MARK2, ATL3, SLC22A24, SLC22A25, SLC22A10, HRASLS2, RARRES3, C11orf95, LGALS12) 0.381151868894315 12 0.210675734605377 0.980081665676171 1158 0.230803435616555 2 1 1 -6.77782662881083 LTS-019 chr11 63676945 63680045 3101 * c(MARK2, RCOR2) 0.475 1 NA 1.12384869293622 27 0.400563548884764 2 2 0 -5.76448450110547 LTS-019 chr11 63680046 77051820 13371775 * c(NAALADL1, KCNE3, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1237, MIR548K, MIR3165, MIR3664, TPBGL, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4696, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, POLD3, CFL1, STARD10, NEU3, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CHKA, SLCO2B1, CDCA5, SNORD15B, BATF2, SLC22A12, NA NA NA NA NA NA NA NA NA LTS-019 MRGPRD, MRGPRF, ARAP1, CATSPER1, COX8A, CPT1A, XRRA1, CST6, CTSW, GRK2, GPHA2, DHCR7, B3GNT6, CTTN, ESRRA, FAU, MRPL21, TPCN2, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, ALDH3B2, FGF3, FGF4, FKBP2, SHANK2, KDM2A, ATG2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, POLA2, FLRT1, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, RNF169, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 BRMS1, TEX40, CHRDL2, ANAPC15, TSKU, C2CD3, LRRC32, PPP1R14B, MYEOV, NPAS4, MAJIN, SLC25A45, NEAT1, P4HA3, PGM2L1, KLHL35, LOC283214, CCDC88B, RCOR2, ALG1L9P, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, OR2AT4, TBX10, IGHMBP2, INPPL1, TBC1D10C, DNAJB13, MALAT1, KRTAP5-9, KRTAP5-10, SPDYC, LIPT2, GPR152, DOC2GP, GUCY2EP, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MIR192, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MIR194-2, ARRB1, MAP6, MEN1, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFV1, NDUFS8, NUMA1, OMP, OVOL1, P2RY2, P2RY6, PAK1, KCNK4, PC, GAL, KMT5B, COA4, PDE2A, PPME1, CABP2, TRMT112, MRPL48, PLCB3, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, ACER3, CDC42BPG, OTUB1, PACS1, SLC22A11, THAP12, GPR137, EMSY, CABP4, CD248, CORO1B, BAD, SCYL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, RAB6A, MAP4K2, RAD9A, RBM4, CCND1, RELA, DPF2, SNORD15A, RPS3, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, CAPN5, UCP2, UCP3, VPS51, MRPL49, UVRAG, ZNHIT2, VEGFB, WNT11, SF1, ZFPL1, LRFN4, C11orf80, NAA40, MOGAT2, TMEM134, MUS81, PAAF1, FOSL1, GDPD5, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 EIF1AD, NUDT22, SYVN1, DGAT2, RELT, PPFIA1, SERPINH1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, SPCS2, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.445019956416959 346 0.0858472546743696 1.0048434812231 21082 0.235929218562163 2 1 1 -6.9512601827328 LTS-019 NA NA NA NA LTS-019 chr11 77051821 77300729 248909 * c(AQP11, PAK1) NA 0 NA 0.958369830463297 63 0.151399525033058 2 NA NA -5.80498827343562 LTS-019 chr11 77300730 77300797 68 * AQP11 NA 0 NA 1.179 1 NA NA NA NA NA LTS-019 chr11 77300798 77412851 112054 * c(CLNS1A, AQP11, RSF1) 0.31 1 NA 1.42929158074673 306 0.321298788208071 3 3 0 -5.76452070873402 LTS-019 chr11 77412852 85347194 7934343 * c(MIR708, KCTD21-AS1, SNORA70E, MIR4300, RAB30-AS1, NDUFC2-KCTD14, MIR5579, DLG2, DDIAS, FAM181B, TENM4, RAB30, KCTD21, AAMDC, ANKRD42, NDUFC2, PCF11, RSF1, PRCP, TMEM126B, USP35, CCDC90B, KCTD14, THRSP, ALG8, NARS2, INTS4, GAB2) 0.338431584521791 49 0.10725613059877 1.37222759085251 2525 0.382711034932725 3 2 1 -6.78913251908923 LTS-019 chr11 85347195 85374025 26831 * c(TMEM126B, CREBZF, TMEM126A) 0.260740478460717 3 0.192486363153341 1.22561504727526 75 0.193055085263108 4 3 1 -6.80772375127827 LTS-019 chr11 85374026 85395180 21155 * c(CCDC89, CREBZF) 0.415 1 NA 1.28043773497837 57 0.285467346450911 3 3 0 -5.76587362835499 LTS-019 chr11 85395181 85989843 594663 * c(CCDC83, CCDC89, SYTL2, PICALM, EED) 0.377973451959662 16 0.0437313293494111 1.26134783617999 641 0.261970482659977 3 2 1 -6.86731040100436 LTS-019 chr11 85989844 86013236 23393 * character(0) NA 0 NA 1.011 1 NA NA NA NA NA LTS-019 chr11 86013237 95710493 9697257 * c(NAALAD2, MIR1304, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, FOLH1B, ENDOD1, RAB38, PANX1, FUT4, CHORDC1, C11orf54, GRM5, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, ANKRD49, KDM4D, SMCO4, TRIM49, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, NA NA NA NA NA NA NA NA NA LTS-019 TYR, TAF1D, FZD4, CEP295, OR7E2P, MTMR2, MED17, CEP57) 0.413228114229461 112 0.137051841019264 1.04543865385333 4900 0.320761839685759 2 1 1 -6.73648433916303 LTS-019 NA NA NA NA LTS-019 chr11 95710494 95711448 955 * MAML2 0.454 1 NA 0.909972794748981 21 0.13418666813347 2 2 0 -5.76495565910881 LTS-019 chr11 95711449 99941322 4229874 * c(MIR1260B, JRKL-AS1, CNTN5, CCDC82, MAML2, JRKL) 0.246542509934336 9 0.234547495782363 1.10056135793691 309 0.623457732888141 2 2 0 -6.87639178315882 LTS-019 chr11 99941323 100227347 286025 * CNTN5 0.453 1 NA 1.14178951624692 109 0.241691841284291 2 2 0 -5.79132636604687 LTS-019 chr11 100227348 106849520 6622173 * c(WTAPP1, MIR3920, CASP12, MIR4693, LOC101054525, YAP1, CARD16, TMEM123, ARHGAP42, KBTBD3, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, PGR, CNTN5, CEP126, CARD18, AASDHPPT, MMP27, LOC643733, TRPC6, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, C11orf70, MMP20) 0.444859815835289 81 0.0804769942588456 1.04925703735594 3579 0.329413401129896 2 1 1 -6.82282047908394 LTS-019 chr11 106849521 107286888 437368 * c(CWF19L2, GUCY1A2) 0 1 NA 1.04431925217933 70 0.288368661055755 2 2 0 -5.76455184554278 LTS-019 chr11 107286889 107833779 546891 * c(CWF19L2, SLC35F2, RAB39A, ELMOD1, LOC643923, SLN, ALKBH8) 0.287832115570829 10 0.231011399430129 1.05845464144736 399 0.392658324169439 2 1 1 -6.9086666049122 LTS-019 chr11 107833780 107977149 143370 * c(RAB39A, CUL5) 0.495 1 NA 1.07691689423828 143 0.301853738268402 2 2 0 -5.76573310048872 LTS-019 chr11 107977150 117780764 9803615 * c(LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, LOC100652768, RBM7, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, CRYAB, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, CEP164, EXPH5, SIK2, SIK3, BACE1, CADM1, ANKK1, RNF214, REXO2, TIMM8B, LINC00900, HSPB2, APOA1, HTR3A, APOA4, C11orf53, APOC3, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, ATM, NNMT, NA NA NA NA NA NA NA NA NA LTS-019 FXYD2, NPAT, PAFAH1B2, SIDT2, FXYD6, C11orf71, POU2AF1, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, TEX12, DSCAML1, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, TAGLN, ZBTB16, ALG9, CUL5, TMPRSS5, BCO2, TMPRSS13, BUD13, DIXDC1, ZC3H12C, ZPR1, PCSK7, HTR3B, ZW10, FDXACB1) 0.432650835101159 148 0.104624221637551 1.03009386548418 7341 0.272775251154119 2 1 1 -6.75521906165639 LTS-019 NA NA NA NA LTS-019 chr11 117780765 117781397 633 * TMPRSS13 NA 0 NA 0.583 1 NA NA NA NA NA LTS-019 chr11 117781398 119534175 1752778 * c(LOC100131626, USP2-AS1, MIR3656, TMPRSS4-AS1, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, MCAM, KMT2A, TRAPPC4, VPS11, TMPRSS4, IFT46, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, TMEM25, CBL, USP2, CD3D, CD3E, CD3G, UBE4A, C2CD2L NA NA NA NA NA NA NA NA NA LTS-019 ) 0.436003257602314 91 0.090915354640466 0.995227815500836 4615 0.418402342669826 2 1 1 -6.77717605292287 LTS-019 NA NA NA NA LTS-019 chr11 119534176 119534193 18 * NECTIN1 NA 0 NA 0.991 1 NA NA NA NA NA LTS-019 chr11 119534194 121232034 1697841 * c(TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, NECTIN1, SC5D, LOC649133, TECTA) 0.446429343767777 43 0.0341350487093192 1.06877778389058 1494 0.538347625085018 2 1 1 -7.22414545208924 LTS-019 chr11 121232035 121403330 171296 * SORL1 NA 0 NA 0.985871613997881 71 0.133977416337722 2 NA NA -5.77920393475196 LTS-019 chr11 121403331 121414210 10880 * SORL1 NA 0 NA 0.835 1 NA NA NA NA NA LTS-019 chr11 121414211 122022927 608717 * c(MIR100HG, MIRLET7A2, MIR125B1, BLID, SORL1) 0.202 1 NA 0.708261745563713 329 0.1715281674384 1 1 0 -5.81590023744946 LTS-019 chr11 122022928 134251777 12228850 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, DCPS, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, NA NA NA NA NA NA NA NA NA LTS-019 OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIR100, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.218107751843575 216 0.073412413169759 0.68375894350832 8538 0.274023400347202 1 1 0 -6.81683541111116 LTS-019 NA NA NA NA LTS-019 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 0.660533031352537 39 0.0935312269691443 1 NA NA -5.76548272244859 LTS-019 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.065 1 NA 0.987902390104202 6 0.341257527389507 2 2 0 -5.7654570245989 LTS-019 chr12 176140 7653981 7477842 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NA NA NA NA NA NA NA NA NA LTS-019 NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.223153684716014 181 0.0605665724571068 0.669774336410746 9235 0.177737362090712 1 1 0 -6.74676405850968 LTS-019 NA NA NA NA LTS-019 chr12 7653982 9586720 1932739 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.227019204302228 52 0.108102534632481 0.644025390167581 2205 0.312527647412868 1 1 0 -6.74722500082149 LTS-019 chr12 9586721 9590055 3335 * DDX12P NA 0 NA 0.122 1 NA NA NA NA NA LTS-019 chr12 9590056 9717935 127880 * DDX12P NA 0 NA 0.0773601968329658 99 0.0936542389367975 0 NA NA -11.1910756482139 LTS-019 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.387 1 NA NA NA NA NA LTS-019 chr12 9747241 10579525 832285 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.224936753762501 42 0.085945871332315 0.626961592838222 1112 0.204148748428021 1 1 0 -6.77484246293865 LTS-019 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 1.592 1 NA NA NA NA NA LTS-019 chr12 10583165 10602459 19295 * c(KLRC1, KLRC2, KLRC3) 0.242626657704231 5 0.151435464802668 0.987576125766812 106 0.394615532067792 1 1 0 -6.75922150917104 LTS-019 chr12 10602460 10603088 629 * KLRC1 NA 0 NA 0.428 1 NA NA NA NA NA LTS-019 chr12 10603089 11150546 547458 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.239585530797639 20 0.0602890188133269 0.603722281114917 589 0.142824489436544 1 1 0 -6.94372103295369 LTS-019 chr12 11150547 11174198 23652 * c(PRH1-PRR4, PRB4) NA 0 NA 0.677 1 NA NA NA NA NA LTS-019 chr12 11174199 21317922 10143724 * c(SMIM10L1, LOC100506314, LOC100506393, PRH1-PRR4, MIR3974, CDKN1B, SLCO1B1, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, C12orf60, EMP1, EPS8, ETV6, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, SLCO1B7, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, NA NA NA NA NA NA NA NA NA LTS-019 PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, PRB2, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3) 0.230859543553612 117 0.0651931576494265 0.682499643447968 4694 0.200847350984371 1 1 0 -6.86563013712608 LTS-019 NA NA NA NA LTS-019 chr12 21317923 21327738 9816 * SLCO1B1 NA 0 NA 0.574236667973158 15 0.0730168278060417 1 NA NA -5.78757320485329 LTS-019 chr12 21327739 21329708 1970 * SLCO1B1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-019 chr12 21329709 21329761 53 * SLCO1B1 0.456 1 NA 1.856 1 NA NA NA NA NA LTS-019 chr12 21329762 32945495 11615734 * c(MIR920, MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, RASSF8, FGD4, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, GYS2, IAPP, SMCO2, OVCH1, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, H3F3C, TSPAN11, GOLT1B, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, CMAS, ARNTL2, PTHLH, NA NA NA NA NA NA NA NA NA LTS-019 KLHL42, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, C12orf71, BHLHE41, FLJ13224, PYROXD1, SPX, SSPN, TMTC1, PPFIBP1, MED21, C2CD5) 0.445164417835358 178 0.057499423847367 1.02833227266356 7008 0.266524007697285 2 1 1 -6.90804399777252 LTS-019 NA NA NA NA LTS-019 chr12 32945496 34182671 1237176 * c(SYT10, PKP2, ALG10) NA 0 NA 1.11427176551976 243 0.27551319291606 2 NA NA -5.8140422272175 LTS-019 chr12 38710341 38710459 119 * character(0) 0.479 1 NA 0.476215646650685 5 0.306145063654471 1 1 0 -5.76449352818993 LTS-019 chr12 38710460 41967677 3257218 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, PDZRN4, KIF21A) 0.46569977133039 39 0.0286991467754884 1.06217593415121 2079 0.260196395864136 2 1 1 -8.23374769373761 LTS-019 chr12 41967678 42478315 510638 * c(GXYLT1, PDZRN4) 0.219 1 NA 1.09621222184381 72 0.36348152827981 2 2 0 -5.77146706828742 LTS-019 chr12 42478316 42538334 60019 * GXYLT1 0.267850502936908 15 0.0314139792964549 1.05952201303342 113 0.440990651534513 8 6 2 -6.97217696531819 LTS-019 chr12 42538335 42538682 348 * GXYLT1 0.431 1 NA 0.674566066363414 4 0.274442465130065 1 1 0 -5.76441083677932 LTS-019 chr12 42538683 46581876 4043194 * c(YAF2, PRICKLE1, ANO6, ARID2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, TWF1, RNY5, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, SCAF11) 0.420712394896301 10 0.105082031448451 1.03920437210672 1862 0.227226597271878 2 1 1 -6.73537939700002 LTS-019 chr12 46581877 51851317 5269441 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, ASIC1, ATF1, SLC11A2, DHH, NA NA NA NA NA NA NA NA NA LTS-019 FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, DDX23, SLC4A8, DAZAP2) 0.448871387068759 139 0.0636854604194346 0.993333970226825 8516 0.244708357315901 2 1 1 -7.00196808693459 LTS-019 NA NA NA NA LTS-019 chr12 51851318 51852342 1025 * SLC4A8 NA 0 NA 1.136 1 NA NA NA NA NA LTS-019 chr12 51852343 66547063 14694721 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, MIR548Z, LOC100506844, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, WIF1, NXPH4, XPOT, KRT71, GPR182, MBD6, ARHGEF25, C12orf56, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, LRIG3, SP7, GTSF1, OR10A7, KRT74, MYL6B, KRT72, CS, KRT80, C12orf66, CYP27B1, NA NA NA NA NA NA NA NA NA LTS-019 DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, EIF4B, RPSAP52, ERBB3, COPZ1, R3HDM2, MON2, NEMP1, TBC1D30, ESYT1, TNS2, CBX5, SMUG1, LEMD3, STAC3, MSRB3, OR6C74, OR6C3, B4GALNT1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, GNS, LOC283335, ZNF740, RASSF3, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, LINC01465, DPY19L2, KRT6C, ORMDL2, TBK1, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, FAM19A2, ANKRD33, OR6C2, OR6C4, IGFBP6, INHBC, ITGA5, ITGA7, ITGB7, KRT77, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, FLJ41278, FIGNL2, OR6C65, OR6C68, LRP1, MIRLET7I, MIR196A2, MIR26A2, MARS, METTL1, MIP, MMP19, FLJ12825, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, KRT76, CSAD, PDE1B, IL23A, TMBIM4, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, AVPR1A, PRIM1, NDUFA4L2, PPM1H, SRGAP1, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR548C, MIR615, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MAP3K12, NABP2, PIP4K2C, AAAS, HMGA2, INHBE, LLPH, PYM1, SARNP, SOAT2, ZC3H10, SPRYD3, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, ACVR1B, KRT75, ATP23, SLC16A7, MARCH9, COQ10A, ACVRL1, SLC4A8, CD63, ESPL1, TESPA1, ZBTB39, PAN2, USP15) 0.440986925819851 310 0.0797572944982538 1.02284450273797 18293 0.264605296448568 2 1 1 -6.82406751101207 LTS-019 NA NA NA NA LTS-019 chr12 66547064 66583180 36117 * c(IRAK3, TMBIM4, LLPH) 0 1 NA 1.05407346443629 33 0.303054856770389 2 2 0 -5.76447052177065 LTS-019 chr12 66583181 66592012 8832 * IRAK3 0.348169826436593 2 0.0254558441227157 1.19041494272015 31 0.258828011978893 6 4 2 -6.77952171341476 LTS-019 chr12 66592013 66597494 5482 * IRAK3 NA 0 NA 0.741 1 NA NA NA NA NA LTS-019 chr12 66597495 81112838 14515344 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, CCT2, FRS2, GLIPR1, CPSF6, KRR1, IRAK3, OSBPL8, RAB3IP, TPH2, CPM, GLIPR1L2, BEST3, E2F7, CSRP2, ZFC3H1, PHLDA1, RAB21, ZDHHC17, GRIP1, GLIPR1L1, KCNMB4, OTOGL, TRHDE-AS1, TRHDE, IFNG, PTPRQ, KCNC2, LRRC10, LYZ, MDM2, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, IL22, PAWR, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, NA NA NA NA NA NA NA NA NA LTS-019 MDM1, NUP107, PTPRB, PTPRR, RAP1B, TBC1D15, SYT1, TSPAN8, MRS2P2, BBS10, YEATS4, THAP2, DYRK2, CAPS2, LGR5, NAV3, HELB) 0.215567122770627 113 0.064115692780182 0.669199597765912 7652 0.193219369119566 1 1 0 -6.74952262008305 LTS-019 NA NA NA NA LTS-019 chr12 81112839 88900985 7788147 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, CCDC59, MKRN9P, KITLG, MYF5, NTS, SLC6A15, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, C12orf29, RASSF9) 0.211186938442693 24 0.0743550895892547 0.721819945625686 1903 0.26863156177954 1 1 0 -7.16168410165691 LTS-019 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.604 1 NA NA NA NA NA LTS-019 chr12 88909243 93788511 4879269 * c(POC1B-GALNT4, KERA, NUDT4, DCN, EPYC, DUSP6, CCER1, LINC01619, POC1B, LINC00936, C12orf74, LUM, KITLG, LINC00615, PLEKHG7, ATP2B1, CLLU1OS, CLLU1, LOC643339, BTG1, LOC728084, EEA1, GALNT4) 0.246814666001307 9 0.0388279681558424 0.650474192063358 1435 0.165617541575787 1 1 0 -7.06907005438324 LTS-019 chr12 93788512 93795916 7405 * NUDT4 NA 0 NA 0.956546091305878 73 0.217393751931824 2 NA NA -5.76502817452663 LTS-019 chr12 93795917 125834314 32038398 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR4304, MIR3685, MIR3652, MIR3922, MIR3908, LOC100505978, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5188, MIR5700, ARPC3, PLXNC1, MPHOSPH9, CAMKK2, TRAFD1, TMED2, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, SNRNP35, PRDM4, CIT, PWP1, FICD, NUDT4, NA NA NA NA NA NA NA NA NA LTS-019 SDSL, TMEM132B, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, SPPL3, CMKLR1, COX6A1, CRY1, BRI3BP, AMDHD1, RFLNA, ZNF664, TMEM120B, WDR66, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DTX1, RILPL2, DNAH10, PLBD2, FAM71C, RMST, EIF2B1, ELK3, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, UHRF1BP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CUX2, KIAA1033, MED13L, SIRT4, ABCB9, ISCU, ATP6V0A2, CORO1C, SLC17A8, TTC41P, LRRC43, TCP11L2, TBX5-AS1, FBXW8, HSPB8, HCAR1, UTP20, MORN3, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, MRPL42, IFT81, GTF2H3, FAM216A, HCFC2, HAL, APAF1, ACACB, HPD, MMAB, HCAR2, TMEM119, LINC01089, IGF1, ACADS, RILPL1, C12orf42, IL31, C12orf75, CFAP73, TMEM233, KMT5A, ARL1, C12orf76, LTA4H, MIR135A2, ASCL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MIR331, MSI1, MVK, MYBPC1, MYL2, NFYB, NOS1, ATP2A2, OAS1, EID3, OAS2, OAS3, P2RX4, P2RX7, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, ARL6IP4, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, RHOF, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, SBNO1, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, ZCCHC8, PRKAB1, SCYL2, POLR3B, FGD6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 WSB2, NDUFA12, DIABLO, ANKS1B, CHPT1, PSMD9, TMCC3, PITPNM2, DHX37, DDX55, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643711, LOC643770, SUDS3, ACTR6, C12orf43, VPS33A, RSRC2, AACS, SNRPF, SNORA53, TBX5, TBX3, HNF1A, MIR620, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBC, UBE2N, UNG, NUP37, DDX54, GNPTAB, B3GNT4, TCTN1, OGFOD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 VPS37B, C12orf49, TCTN2, NAA25, SLC8B1, RNF34, CCDC92, MTERF2, ACAD10, CDK2AP1, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, TCHP, COQ5, HVCN1, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DENR, OASL, DYNLL1, SRSF9, CRADD, HRK, ADAM1A, SOCS2, HCAR3, ANKRD13A, TMEM116, UBE3B, HIP1R, TMEM263, C12orf65, BICDL1, CABP1, SCARB1, NCOR2, WSCD2, SART3, KNTC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MLEC, GIT2, NUAK1, RBM19, RNF10, NR1H4) 0.215267459882667 606 0.0712434769366844 0.658641361881957 30543 0.209809210690333 1 1 0 -6.762227495415 LTS-019 NA NA NA NA LTS-019 chr12 125834315 133245551 7411237 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, EP400, FBRSL1, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1) 0.20860533958357 78 0.0662575940143374 0.693539659339034 3052 0.200136649129141 1 1 0 -6.95257925621342 LTS-019 chr12 133245552 133781107 535556 * c(ZNF605, ZNF891, ZNF268, PGAM5, ANKLE2, GOLGA3, POLE, CHFR, PXMP2, ZNF10, ZNF140) 0.216292387359942 60 0.0784315509988831 0.638253451149251 1597 0.155178433423333 1 1 0 -6.75441932781214 LTS-019 chr12 133781108 133781236 129 * ZNF268 NA 0 NA 0.803 1 NA NA NA NA NA LTS-019 chr12 133781237 133812039 30803 * c(ZNF268, ANHX) 0.131643797129942 8 0.0346221956058744 1.04673064211678 124 0.534997535969384 2 2 0 -6.77049876603792 LTS-019 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.812490420648263 11 0.0756854735671972 1 NA NA -5.76726298053036 LTS-019 chr13 19271620 19943770 672151 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.49 1 NA 0.917770938262435 94 0.55423744526443 2 2 0 -5.78403803246474 LTS-019 chr13 19943771 25266932 5323162 * c(MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.447117728036593 65 0.0610490345164001 1.0225622127996 2854 0.310351274043699 2 1 1 -6.90791503219757 LTS-019 chr13 25266933 25280667 13735 * ATP12A 0 1 NA 1.0193545521366 37 0.933808722239051 2 2 0 -5.76441302684815 LTS-019 chr13 25280668 25671089 390422 * c(ATP12A, PABPC3, CENPJ, RNF17, TPTE2P1) 0.343625510872325 25 0.103198804902641 1.05007958719434 430 0.38807652366551 3 2 1 -6.88668379959122 LTS-019 chr13 25671090 25671292 203 * PABPC3 0.433 1 NA 1.30530733305612 5 0.542889767816635 3 3 0 -5.76441261798361 LTS-019 chr13 25671293 33268484 7597192 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, PABPC3, POLR1D, POMP, ATP8A2, UBL3, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, NA NA NA NA NA NA NA NA NA LTS-019 BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.435718346590433 115 0.0977776342081095 1.017284914696 4872 0.350549314954056 2 1 1 -6.77566074393883 LTS-019 NA NA NA NA LTS-019 chr13 33268485 33270853 2369 * PDS5B NA 0 NA 1.497 1 NA NA NA NA NA LTS-019 chr13 33270854 39952751 6681898 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.443131006604364 52 0.0948077577793257 1.07964559449856 2937 0.331714635052575 2 1 1 -6.84546897964985 LTS-019 chr13 39952752 40174914 222163 * LHFP NA 0 NA 0.758 1 NA NA NA NA NA LTS-019 chr13 40174915 40363726 188812 * c(MIR4305, LHFP, COG6) 0.458522287764457 2 0.0367695526217005 0.688790348665279 168 0.222871927734163 2 1 1 -7.85372840804263 LTS-019 chr13 40363727 41382711 1018985 * c(MIR320D1, TPTE2P5, LINC00332, SLC25A15, MRPS31, FOXO1, LINC00548, COG6, LINC00598) 0.258 1 NA 0.660926855748858 165 0.127603928629279 1 1 0 -5.76516667460686 LTS-019 chr13 41382712 49039526 7656815 * c(TPT1-AS1, OR7E37P, VWA8-AS1, CPB2-AS1, TPTE2P5, MIR5006, LINC00563, LINC00441, MED4-AS1, SMIM2-IT1, LPAR6, SLC25A15, WBP4, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, VWA8, ZC3H13, LRCH1, SLC25A30, NUFIP1, SUGT1P3, SIAH3, RGCC, MED4, DNAJC15, GTF2F2, HTR2A, KCTD4, SERP2, LCP1, ENOX1, NUDT15, GPALPP1, RB1, TSC22D1-AS1, SNORA31, MIR621, TPT1, NAA16, RUBCNL, NA NA NA NA NA NA NA NA NA LTS-019 COG3, KBTBD7, TNFSF11, SUCLA2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.223247438023894 70 0.0591768868203407 0.645764720393582 3929 0.186160622146731 1 1 0 -6.83603311616595 LTS-019 NA NA NA NA LTS-019 chr13 49039527 49047462 7936 * RB1 NA 0 NA 0.339 1 NA NA NA NA NA LTS-019 chr13 49047463 49070495 23033 * c(RCBTB2, RB1) NA 0 NA 0.295317760687238 89 0.131222641975801 0 NA NA -5.76463122962224 LTS-019 chr13 49070496 49073761 3266 * RCBTB2 NA 0 NA 0.534 1 NA NA NA NA NA LTS-019 chr13 49073762 53420795 4347034 * c(LINC00462, MIR759, MIR3613, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, MRPS31P5, TRIM13, DLEU1, SUGT1, RCBTB2, LECT1, ARL11, WDFY2, HNRNPA1L2, ST13P4, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, INTS6, CKAP2, KCNRG, LINC00282, MLNR, GUCY1B2, NEK5, KPNA3, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, RCBTB1, THSD1, CYSLTR2, SPRYD7, LINC00371, SERPINE3, RNASEH2B, DHRS12, CDADC1, CAB39L, CCDC70, SETDB2, NA NA NA NA NA NA NA NA NA LTS-019 EBPL, DLEU2, UTP14C) 0.228224817113485 66 0.0595104425617284 0.64735115209359 3039 0.175876120922629 1 1 0 -6.80046869743864 LTS-019 NA NA NA NA LTS-019 chr13 53420796 107144320 53723525 * c(FKSG29, UBAC2-AS1, MIR1297, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, LINC00359, MBNL2, NA NA NA NA NA NA NA NA NA LTS-019 FARP1, SPRY2, ABCC4, PIBF1, OLFM4, SOX21, KLF12, SLITRK1, KCTD12, CLN5, METTL21EP, SLAIN1, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MZT1, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, SLC10A2, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, TPP2, LINC00460, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, RNF219, BORA, TDRD3, DIAPH3, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.21739994154874 127 0.0653992650342236 0.684665030320612 9036 0.192357893890933 1 1 0 -7.46326176356198 LTS-019 NA NA NA NA LTS-019 chr13 107144321 108183591 1039271 * c(LINC00443, EFNB2, LINC00551, ARGLU1, FAM155A) NA 0 NA 0.684346655853764 156 0.161363201619996 1 NA NA -5.78636320213027 LTS-019 chr13 108183592 108860827 677236 * c(LIG4, FAM155A) 0.109 1 NA 1.194064905743 47 0.271298724932244 2 2 0 -5.87175627203371 LTS-019 chr13 108860828 114773106 5912279 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.139658244863315 117 0.0458691050824082 1.05207238681839 3988 0.349073529086964 2 2 0 -6.73893594739026 LTS-019 chr13 114773107 114774832 1726 * RASA3 NA 0 NA 0.78 1 NA NA NA NA NA LTS-019 chr13 114774833 115064542 289710 * c(RASA3, UPF3A, CDC16) 0.103173510939516 3 0.0980612053770501 0.926437434403965 217 0.300385478505899 2 2 0 -6.84245520539889 LTS-019 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.896545932115763 85 0.126718508483003 2 NA NA -5.78680594215574 LTS-019 chr14 19434116 20444012 1009897 * c(BMS1P17, OR4N2, OR4K2, POTEG, OR4Q3, OR4M1, POTEM, OR4K5, OR11H2, OR4K1, OR4K15) 0.277 1 NA 0.690643028370003 199 0.126961801222239 1 1 0 -5.82246882389911 LTS-019 chr14 20444013 22471696 2027684 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-019 TEP1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.228384878405759 143 0.0602117917361673 0.668083604087111 3577 0.443204650652115 1 1 0 -6.74761744557484 LTS-019 NA NA NA NA LTS-019 chr14 22471697 22991095 519399 * character(0) 0.219588731706464 22 0.0662731622501298 0.817444425394306 629 0.193101977043269 1 1 0 -7.07462152689391 LTS-019 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.652 1 NA NA NA NA NA LTS-019 chr14 22992444 78366967 55374524 * c(MED6, SNORD127, MIR208B, KTN1-AS1, SLC25A21-AS1, LOC100288846, LOC100289511, MIR1260A, OTX2-AS1, MIR4308, MIR4307, MIR548Y, LINC00645, LOC100506071, LOC100506321, LINC00871, LINC00648, NA, NEDD8-MDP1, BCL2L2-PABPN1, SYNJ2BP-COX16, CHURC1-FNTB, MIR4505, MIR4708, MIR4709, MIR4503, MIR548AI, MIR4707, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, DHRS2, GPHN, EFS, CDKN3, IRF9, PRMT5, SEC23A, VTI1B, NA NA NA NA NA NA NA NA NA LTS-019 CEBPE, BATF, TM9SF1, NPC2, AHSA1, EXOC5, CGRRF1, CFL2, DHRS4, ACOT2, TMED10, FERMT2, RIPK3, AP4S1, C14orf1, WDHD1, BAZ1A, MAP4K5, EGLN3, DTD2, IFT43, WDR89, L3HYPDH, TRIM9, DHRS1, CMTM5, NA, CMA1, C14orf28, TRAPPC6B, MRPL52, PSMB11, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, NOXRED1, JDP2, ISCA2, ACOT4, LTB4R, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PTGR2, FAM161B, LRRC74A, ISM2, MDP1, LRFN5, CTSG, DAD1, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, FITM1, REM2, TMEM30B, MDGA2, SAMD15, NOP9, COCH, SPTSSA, DLST, EIF2S1, ADCY4, LINC01599, ERH, ESR2, ESRRB, NID2, VASH1, ATG14, FKBP3, ZBTB1, FOXG1, SNW1, ACIN1, PCNX1, DAAM1, SAMD4A, TTLL5, FAM179B, SYNE2, SCFD1, KHNYN, ANGEL1, FNTB, SLC7A8, ZFYVE26, TTC9, FOS, KLHDC2, FUT8, RALGAPA1, SFTA3, FBXO33, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 HECTD1, HEATR5A, NGDN, LRP10, PLEKHG3, SIPA1L1, DCAF4, NKX2-8, TINF2, GCH1, PLEK2, TIMM9, MLH3, ATP5S, KCNH5, CIDEB, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, PROX2, ZDHHC22, TMED8, C14orf178, TSSK4, FAM177A1, GPR33, GPX2, CHMP4A, STXBP6, GSTZ1, POMT2, STRN3, GZMH, ERO1A, GZMB, HIF1A, FOXA1, DHRS4L2, ADAM20P1, C14orf39, SNORD56B, HSPA2, VSX2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ARG2, TBPL2, LINC01551, TOMM20L, KTN1, ARHGAP5, LGALS3, HEATR4, FLJ22447, PLEKHD1, LTBP2, MIR208A, MAX, MGAT2, MIA2, MAP3K9, MMP14, ALDH6A1, MNAT1, LINC00238, TEX21P, MTHFD1, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, SIX6, OTX2, OXA1L, PAX9, COQ6, EMC9, PCK2, ATL1, FCF1, RDH11, NIN, COX16, GMPR2, SLC22A17, DACT1, ATP6V1D, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PGF, PIGH, ZFYVE1, PNN, POLE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 GNG2, KLHL28, TMEM260, HAUS4, PPM1A, PPP2R3C, PRPF39, C14orf119, FBXO34, RNF31, RBM23, DNAAF2, C14orf105, EXD2, VRTN, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, DHRS4-AS1, G2E3, FLVCR2, GPATCH2L, AP5M1, PRKCH, EAPP, ACTR10, PRKD1, YLPM1, LTB4R2, PSEN1, PSMA3, PSMA6, PSMB5, CCDC177, SDR39U1, PSMC6, ADCK1, TMEM63C, PELI2, PSME1, PSME2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, NYNRIN, TXNDC16, TRMT5, HOMEZ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 FANCM, ZNF410, NGB, ABCD4, PYGL, RBM25, SNX6, RABGGTA, RAD51B, ARID4A, BCL2L2, SAV1, C14orf93, RPL36AL, RPS29, RTN1, ABHD4, VIPAS39, NPAS3, SMOC1, ACOT1, ACOT6, IRF2BPL, SRSF5, CBLN3, MPP5, CDH24, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SYNDIG1L, IL25, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SRP54, SSTR1, ZFP36L1, STYX, MIR624, TGFB3, TGM1, NKX2-1, DHRS4L1, CCDC175, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LINC01220, ZBTB25, THTPA, VCPKMT, ZC2HC1C, IPO4, L2HGDH, BBOF1, NUBPL, DCAF11, DDHD1, PABPN1, DPF3, SGPP1, TMX1, SLIRP, DNAL1, RPS6KL1, SYT16, FSCB, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, GEMIN2, AJUBA, ZFHX2, CIPC, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, ALKBH1, EIF2B2, AP1G2, SLC25A21, PAPLN, SLC7A7, CARMIL3, PPP1R3E, NEMF, CHURC1, ELMSAN1, LIN52, NEK9, PNMA1, MAPK1IP1L, CPNE6, AKAP6, AKAP5, SPTLC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ENTPD5, RGS6, KIAA0391, ACYP1, SUSD6, KIAA0586, DLGAP5, AREL1, REC8) 0.221023150282925 672 0.0689625302692219 0.655349213935656 37721 0.258822537634593 1 1 0 -6.81573146094855 LTS-019 NA NA NA NA LTS-019 chr14 78366968 78367045 78 * ADCK1 NA 0 NA 0.679 1 NA NA NA NA NA LTS-019 chr14 78367046 81945897 3578852 * c(DIO2-AS1, CEP128, DIO2, GTF2A1, ADCK1, SEL1L, SNORA79, TSHR, STON2, NRXN3) 0.242525627376886 14 0.0460955171713769 0.703741285965037 1133 0.18729880604336 1 1 0 -7.08557861227147 LTS-019 chr14 81945898 83159094 1213197 * SEL1L NA 0 NA 0.715160883798387 120 0.188434907105043 1 NA NA -5.87572058511114 LTS-019 chr14 83159095 85995687 2836593 * LINC00911 0.103 1 NA 1.06434766509168 19 0.210606101109539 2 2 0 -5.78964382139549 LTS-019 chr14 85995688 106494285 20498598 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, FBLN5, SIVA1, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, NA NA NA NA NA NA NA NA NA LTS-019 GSC, SERPINA12, PRIMA1, TTC7B, SYNE3, EML5, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, FLRT2, NUDT14, LINC00521, SERPINA11, GALC, KIF26A, TMEM251, TCL6, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, FOXN3-AS2, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RTL1, TMEM179, FOXN3-AS1, LINC00642, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, CDCA4, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KCNK13, C14orf132, PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, TMEM121, GPR68, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, GPR65, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, BTBD6, EFCAB11, MTA1, EXOC3L4, WDR20, RPS6KA5, TRIP11, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2, GOLGA5) 0.141214496414966 354 0.0490005431008693 1.00505415173509 17886 0.300551949069466 2 2 0 -6.86638341332524 LTS-019 NA NA NA NA LTS-019 chr14 106494286 106518848 24563 * character(0) 0.200719343921043 4 0.0425049016781202 0.732515592502852 16 0.206643321934197 1 1 0 -6.84609785547554 LTS-019 chr14 106518849 106733295 214447 * character(0) NA 0 NA 0.574467942242368 64 0.348396417163069 1 NA NA -5.78651992986794 LTS-019 chr14 106733296 106791119 57824 * LINC00226 0.328 1 NA 1.10089221016254 19 0.779831392032919 2 2 0 -5.76461180467351 LTS-019 chr14 106791120 106866465 75346 * character(0) 0.317499820205136 9 0.150565600320923 1.21935263833828 56 0.898350760177609 4 3 1 -6.76024978412066 LTS-019 chr14 106866466 106940497 74032 * LINC00221 0.389695049573389 15 0.108509819612701 2.11003822671508 53 0.635001615371133 5 3 2 -6.73562023840572 LTS-019 chr14 106940498 106962915 22418 * LINC00221 NA 0 NA 0.588 1 NA NA NA NA NA LTS-019 chr14 106962916 107178941 216026 * character(0) 0.348898339881945 10 0.112431164125729 1.2938197018321 80 1.07229445752519 3 2 1 -6.7432587152131 LTS-019 chr14 107178942 107283157 104216 * character(0) NA 0 NA 0.95552766463779 54 0.310405131903372 2 NA NA -5.76878717572443 LTS-019 chr15 20169987 20446043 276057 * character(0) 0.492 1 NA 1.22642148829454 23 0.358739118219231 3 3 0 -5.78954778638561 LTS-019 chr15 20446044 22466414 2020371 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.383975442941664 41 0.104388352074264 1.39206616637126 264 0.81285668157214 3 2 1 -6.75755282511262 LTS-019 chr15 22466415 22482905 16491 * character(0) NA 0 NA 0.853 1 NA NA NA NA NA LTS-019 chr15 22482906 23932461 1449556 * c(HERC2P7, GOLGA8DP, MIR4508, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, MAGEL2, REREP3, GOLGA8S, MKRN3, NIPA2) 0.425689661888526 28 0.0786946748633721 1.04996518228746 895 0.272352494938556 2 1 1 -6.7471769651965 LTS-019 chr15 24920497 25328715 408219 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, NPAP1, SNORD109B, PWARSN, IPW, SNRPN, PWAR5, SNURF) 0.302 1 NA 0.698762946765541 301 0.163526409556285 1 1 0 -5.78830623525306 LTS-019 chr15 25328716 25415825 87110 * c(SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD116-26, SNORD116-28, SNORD116-29, PWAR1, SNORD109B, IPW, SNORD116-19) 0.172 1 NA 0.696784959666218 77 0.130476773073556 1 1 0 -5.77157695278404 LTS-019 chr15 25415826 30502814 5086989 * c(SNORD115-2, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, NA NA NA NA NA NA NA NA NA LTS-019 LOC100128714, LOC100289656, MIR4715, FAM189A1, GABRA5, GABRB3, GABRG3, DKFZP434L187, APBA2, SNORD109B, SNORD115-1, PWAR4, IPW, HERC2P9, WHAMMP2, OCA2, LINC00929, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, UBE3A, HERC2) 0.233946000043875 43 0.0657054402058668 0.671003174851104 1949 0.185012141998071 1 1 0 -6.773733570539 LTS-019 NA NA NA NA LTS-019 chr15 30502815 30700198 197384 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.245090448316644 60 0.204907041759701 0 NA NA -5.84467659809286 LTS-019 chr15 30700199 30918365 218167 * ARHGAP11B NA 0 NA 0.568 1 NA NA NA NA NA LTS-019 chr15 30918366 38644572 7726207 * c(WHAMMP1, LOC100288637, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, CHRM5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, FAN1, GOLGA8A, LPCAT4, NUTM1, GREM1, LOC283710, FMN1, HERC2P10, MIR211, MEIS2, TRPM1, GOLGA8B, EMC4, KLF13, MTMR10, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, ANP32AP1, GOLGA8O, KATNBL1, C15orf41, ARHGAP11B, DPH6, AQR, ARHGAP11A, SLC12A6) 0.210820253354413 76 0.0534124812931841 0.664066715890888 3980 0.208926058296938 1 1 0 -6.74729560871185 LTS-019 chr15 38644573 41272455 2627883 * c(SRP14-AS1, ANKRD63, RAD51-AS1, RASGRP1, GPR176, CHST14, SPRED1, FSIP1, RHOV, BAHD1, GCHFR, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, EIF2AK4, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, BUB1B, THBS1, CHAC1, ZFYVE19, DISP2, C15orf57, KNSTRN, BMF) 0.202390818895732 73 0.0806830807105033 0.635228696420059 3691 0.200133236596822 1 1 0 -6.83430173172506 LTS-019 chr15 41272456 41549250 276795 * c(CHP1, EXD1, INO80) NA 0 NA 0.636962766790336 281 0.115411662453143 1 NA NA -5.7857260990799 LTS-019 chr15 41549251 41555045 5795 * CHP1 NA 0 NA 0.878 1 NA NA NA NA NA LTS-019 chr15 41555046 41570909 15864 * CHP1 0.399 1 NA 1.07031913721089 13 0.485706094522614 2 2 0 -5.76444964197807 LTS-019 chr15 41570910 45050593 3479684 * c(JMJD7, PLA2G4B, MIR1282, MIR4310, SERF2-C15ORF63, SERF2, CHP1, CASC4, OIP5, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, HYPK, GANC, TMEM87A, RPAP1, TUBGCP4, PLA2G4D, PDIA3, EHD4, ITPKA, LTK, MAP1A, MFAP1, CATSPER2P1, NDUFAF1, NUSAP1, SPTBN5, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, NA NA NA NA NA NA NA NA NA LTS-019 EIF3J-AS1, MIR626, MIR627, TP53BP1, PIN4P1, OIP5-AS1, TYRO3, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, JMJD7-PLA2G4B, SNAP23, TGM5, PPIP5K1, LCMT2) 0.411476758907852 95 0.137103872638585 0.996721235665027 7259 0.266801268706924 2 1 1 -6.77973850995223 LTS-019 NA NA NA NA LTS-019 chr15 45050594 45118037 67444 * TRIM69 0.258 1 NA 0.919070029746304 33 0.813353032393087 2 2 0 -5.76530641622992 LTS-019 chr15 45118038 45366571 248534 * c(TERB2, SORD) 0.258583787793103 12 0.114293349312065 1.08592074552492 172 0.741683741798226 4 3 1 -6.84580470166532 LTS-019 chr15 45366572 45366822 251 * SORD 0.498 1 NA 1.00164310313207 7 0.112251206378076 2 2 0 -5.76442473609358 LTS-019 chr15 45366823 81666550 36299728 * c(NR2E3, MIR147B, DNM1P35, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR1266, NDUFAF4P1, MIR548H4, MIR2116, MIR4311, MIR4312, MIR4313, IQCH-AS1, ST20-MTHFS, DYX1C1-CCPG1, MIR4514, MIR4513, MIR4716, MIR4713, MIR4511, MIR4712, SCAMP2, SNUPN, PDCD7, MYZAP, MIR5003, TSPAN3, FEM1B, ADAM10, DENND4A, SNAPC5, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, GNB5, ARPP19, CLPX, NA NA NA NA NA NA NA NA NA LTS-019 MORF4L1, SLC27A2, ADAMTS7, CHRNA3, CHRNA5, LACTB, CHRNB4, DIS3L, CLK3, LEO1, SENP8, MTFMT, SLC51B, HIGD2B, TMEM266, HYKK, CRABP1, CSK, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DRAIC, C15orf61, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CYP19A1, CFAP161, TBC1D21, DYX1C1, ODF3L1, DUT, SCAMP5, FAM227B, CT62, GRAMD2, MGC15885, LCTL, ETFA, FAH, FBN1, FGF7, ITGA11, CEP152, ZNF609, TBC1D2B, MESDC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ACSBG1, KIAA1024, DMXL2, TMED3, AP4E1, DAPK2, EID1, SPESP1, LINGO1-AS1, GABPB1, LYSMD2, WDR72, SNX33, ARIH1, GALK2, SIN3A, ULK3, GLCE, PYGO1, BLOC1S6, FBXO22, GATM, NPTN, FOXB1, HMGN2P46, SLC24A5, PRTG, LINC00926, EWSAT1, REC114, ST20-AS1, LINC00927, LOC283731, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, HEXA, ONECUT1, TMEM202, IDH3A, GLDN, GOLGA6A, TMC3, RBPMS2, ANKDD1A, IL16, IREB2, AQP9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ISLR, USP50, TEX9, TNFAIP8L3, C2CD4B, C15orf59, KBTBD13, UBAP1L, SKOR1, ANKRD34C, LIPC, SHC4, CTXN2, ST20, LOXL1, DUOXA2, MIR184, MIR190A, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UNC13C, UBL7-AS1, MYO1E, MYO5A, MYO9A, NEDD4, NEO1, OAZ2, SCAPER, DUOX2, MYEF2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, PKM, PML, DUOX1, CSNK1G1, ZFAND6, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, LRRC49, PAQR5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZWILCH, FLJ10038, UACA, IMP3, LARP6, MNS1, DNAJA4, GOLGA6B, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, PSMA4, C15orf39, THAP10, PARP6, DTWD1, FAM219B, CEMIP, ISLR2, IGDCC4, PTPN9, SQRDL, ABHD17C, BBS4, RAB27A, RASGRF1, MESDC1, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, BCL2A1, PPCDC, CELF6, RORA, RPL4, RPLP1, STRA6, LOC645752, SH2D7, LOC646938, IQCH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ISL2, RFX7, GOLGA6C, GOLGA6D, SLC12A1, BNIP2, SNX1, HSP90AB4P, SORD, SCARNA14, FBXO22-AS1, MIR549A, MIR628, MIR629, MIR630, MIR631, TCF12, TLE3, TPM1, LOC729739, ANKRD34C-AS1, TYRO3P, CA12, SLC30A4, SPATA5L1, NOX5, NEIL1, ICE2, AAGAB, LMAN1L, SLTM, PEAK1, SNX22, THSD4, ATP8B4, SEMA6D, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, PLEKHO2, WDR61, CD276, STARD5, ANP32A, POLR2M, VWA9, LINC00597, ADPGK, APH1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TLN2, FAM96A, C15orf48, MEGF11, SEMA7A, CILP, SPPL2A, LINGO1, CGNL1, UBL7, PIAS1, RAB11A, ALDH1A2, HERC1, PSTPIP1, SHF, DUOXA1, USP8, CCNB2, LOC91450, SLC28A2, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, UBE2Q2, COPS2, TRIP4, COX5A, STOML1, PIGB, KIF23, IGDCC3, SECISBP2L, KIAA0101, ARNT2, USP3) 0.434062286439011 642 0.0977647408682426 0.984338429372497 31192 0.566000367378084 2 1 1 -6.93875278755465 LTS-019 NA NA NA NA LTS-019 chr15 82334086 84651290 2317205 * c(NA, UBE2Q2P2, NA, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, ADAMTS7P1, GOLGA6L9, HDGFRP3, BTBD1, TM6SF1, ADAMTSL3, CPEB1, SH3GL3, BNC1, GOLGA6L10, SCARNA15, EFL1, AP3B2, FAM103A1, MEX3B, HOMER2) 0.383719329868044 20 0.0515964860084585 1.34407503433322 1380 0.324290579003264 3 2 1 -6.85938691957767 LTS-019 chr15 84651291 84773393 122103 * c(ADAMTSL3, EFTUD1P1) 0.321 1 NA 1.3912921585885 141 0.327188022282334 3 3 0 -5.76454265525242 LTS-019 chr15 84773394 89442398 4669005 * c(MIR1276, MIR1179, UBE2Q2L, LINC00933, MIR3529, AKAP13, AGBL1, HAPLN3, LINC00052, ACAN, SEC11A, MRPL46, NTRK3-AS1, ISG20, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, MIR7-2, MFGE8, DNM1P41, LOC440300, NMB, NTRK3, PDE8A, SCAND2P, ZSCAN2, DET1, ALPK3, LOC642423, GOLGA6L4, KLHL25, AEN, EFTUD1P1, MRPS11, AGBL1-AS1, WDR73, SLC28A1, ZNF592) 0.295788626197774 34 0.162807468612491 1.3900580373443 2564 0.573160180771916 3 2 1 -6.83536277933211 LTS-019 chr15 89442399 89442466 68 * MFGE8 0.4 1 NA 0.991858133858201 3 0.0990471268302788 2 2 0 -5.76441837331846 LTS-019 chr15 89442467 102516492 13074026 * c(FAM138E, LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, MESP2, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, OR4F4, SLCO3A1, LINC00928, FAM169B, ANPEP, IDH2, ZNF774, IGF1R, ARPIN, KIF7, ZNF710, HDDC3, WASH3P, NA NA NA NA NA NA NA NA NA LTS-019 SPATA41, GDPGP1, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, CRTC3, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.356646219477442 286 0.0744417278829719 1.35560800729154 8244 0.397455142863281 3 2 1 -6.81538324955444 LTS-019 NA NA NA NA LTS-019 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.579 1 NA NA NA NA NA LTS-019 chr16 81704 96405 14702 * character(0) 0.389 1 NA 0.942619658903267 3 0.185608009884631 2 2 0 -5.76675690385854 LTS-019 chr16 96406 571904 475499 * c(LOC100134368, MRPL28, DECR2, HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, NME4, POLR3K, LUC7L, TMEM8A, RHBDF1, PDIA2, SNRNP25, NPRL3, AXIN1, FAM234A, RGS11, RAB11FIP3) 0.440336832548919 24 0.0675401651837148 0.985788678734313 1202 0.242566828724918 2 1 1 -6.83314038852246 LTS-019 chr16 571905 602047 30143 * c(MIR3176, MIR5587, LINC00235, CAPN15, RAB11FIP3) 0 1 NA 1.02489600839324 96 0.21704810258954 2 2 0 -5.76446608793843 LTS-019 chr16 602048 820229 218182 * c(MSLN, STUB1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, NHLRC4, JMJD8, RAB40C, NARFL, FAM173A, CAPN15, MIR662, METRN, WDR24, HAGHL, METTL26, MCRIP2, RHOT2, RHBDL1, PIGQ) 0.288971022332699 10 0.236938247932522 1.02822907042566 1427 0.253915988612098 2 1 1 -6.89665963632498 LTS-019 chr16 820230 822721 2492 * MIR662 0.43 1 NA 1.23658571371047 11 0.289425920809391 3 3 0 -5.7647200354255 LTS-019 chr16 822722 1485255 662534 * c(RPUSD1, TSR3, SSTR5-AS1, TPSD1, TPSG1, C16orf91, SOX8, PRR25, C1QTNF8, GNG13, CHTF18, TPSB2, CCDC154, UNKL, LMF1, SSTR5, TPSAB1, UBE2I, GNPTG, CACNA1H, BAIAP3) 0.390255143473758 74 0.143117056477796 1.03025420734128 1583 0.503066570518197 2 1 1 -6.75006188051922 LTS-019 chr16 1485256 1486875 1620 * CCDC154 0.498 1 NA 0.980811485396731 13 0.142934941270137 2 2 0 -5.76455944539022 LTS-019 chr16 1486876 2653223 1166348 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, LINC00254, ABCA17P, MRPS34, NA NA NA NA NA NA NA NA NA LTS-019 SNORA78, TSC2, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.446772211599513 120 0.0907343982313707 1.0086086112083 3902 0.251667603780165 2 1 1 -6.81738701294387 LTS-019 NA NA NA NA LTS-019 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.506 1 NA NA NA NA NA LTS-019 chr16 2672647 2747857 75211 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.468602718490856 3 0.0135277492584687 0.625508510791189 81 0.481316572435683 2 1 1 -11.0997003645793 LTS-019 chr16 2747858 2747929 72 * KCTD5 NA 0 NA 0.764 1 NA NA NA NA NA LTS-019 chr16 2747930 3535540 787611 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, ZNF263, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, ZNF597, BICDL2, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, OR2C1, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, PRSS22, MMP25, TCEB2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.437202905985627 78 0.0900786693211365 1.00880142687737 2086 0.318898727939451 2 1 1 -6.77501724229566 LTS-019 chr16 3535541 3612828 77288 * c(NLRC3, CLUAP1, C16orf90, NAA60) 0 1 NA 0.997736719897893 171 0.277241216741057 2 2 0 -5.76532433406633 LTS-019 chr16 3612829 4253131 640303 * c(TRAP1, ADCY9, CREBBP, DNASE1, NLRC3, SRL, SLX4) 0.283954637438158 10 0.212838514685038 1.00998852088626 794 0.353151263428946 2 1 1 -6.95237965901272 LTS-019 chr16 4253132 4254523 1392 * SRL 0.4 1 NA 0.984504407929502 5 0.160598256528519 2 2 0 -5.76449858025226 LTS-019 chr16 4254524 12162969 7908446 * c(MIR548X, LINC01569, NAGPA-AS1, CORO7-PAM16, VASN, RMI2, ANKS3, UBALD1, SEPT12, TEKT5, C16orf89, C16orf71, ABAT, EEF2KMT, EMP2, CLEC16A, MGRN1, CARHSP1, TMEM186, ZNF500, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, BCAR4, CIITA, SMIM22, NUBP1, PAM16, TXNDC11, NAGPA, PMM2, RBFOX1, PPL, ALG1, PRM1, PRM2, NMRAL1, PRM3, TNFRSF17, SRL, TFAP4, TNP2, TVP23A, USP7, NA NA NA NA NA NA NA NA NA LTS-019 METTL22, CORO7, ROGDI, ATF7IP2, SNN, NUDT16L1, GLYR1, GLIS2, SOCS1, DNAJA3, SNX29, LITAF, SEC14L5) 0.442611475367544 115 0.0822834610561972 1.02369430865124 4678 0.250486279711348 2 1 1 -6.81622948563759 LTS-019 NA NA NA NA LTS-019 chr16 12162970 12297186 134217 * SNX29 0.316 1 NA 1.03535248190459 47 0.19449530028162 2 2 0 -5.7644179990887 LTS-019 chr16 12297187 12798778 501592 * c(CPPED1, SNX29) 0.336528306666154 9 0.219051617458331 1.0465160078737 119 0.249879595560449 2 1 1 -6.80819131967595 LTS-019 chr16 12798779 12897578 98800 * c(MIR4718, CPPED1) 0.489 1 NA 0.926320881600191 19 0.217885545897637 2 2 0 -5.7803679420239 LTS-019 chr16 12897579 14968958 2071380 * c(MIR365A, ERCC4, NOMO1, PARN, BFAR, CPPED1, MIR193B, MKL2, NPIPA3, SHISA9, ABCC6P2, PLA2G10) 0.446787896905747 16 0.0563264295572395 1.04610625441522 553 0.303512999726472 2 1 1 -6.92665533102801 LTS-019 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.289 1 NA NA NA NA NA LTS-019 chr16 15068593 15123936 55344 * PDXDC1 0.225 1 NA 1.40954159965549 108 0.284578393680077 3 3 0 -5.7644104551687 LTS-019 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.843 1 NA NA NA NA NA LTS-019 chr16 15125636 20850993 5725358 * c(NPIPA5, MIR3179-2, MIR3180-4, COQ7, ERI2, ACSM1, NTAN1, FOPNL, ACSM2A, IQCK, GPR139, ITPRIPL2, PDILT, PDXDC1, SMG1, ARL6IP1, MPV17L, GP2, NOMO2, PKD1P1, ACSM2B, ABCC6, KNOP1, NOMO3, ABCC1, MYH11, GDE1, GPRC5B, SYT17, RRN3, NDE1, ACSM5, THUMPD1, C16orf62, MIR484, RPS15A, ACSM3, XYLT1, ABCC6P1, CLEC19A, UMOD, TMC5, TMC7, LOC81691, C16orf45, KIAA0430, CCP110) 0.422387658094023 93 0.138896889655795 1.04827532951333 3884 0.316554732067634 2 1 1 -6.73880276389722 LTS-019 chr16 20850994 20857698 6705 * c(ERI2, LOC81691) 0.434 1 NA 1.01825281384513 31 0.191732295449357 2 2 0 -5.76444789055384 LTS-019 chr16 20857699 21152616 294918 * c(ERI2, DCUN1D3, DNAH3, LYRM1, LOC81691) 0.18106625595384 9 0.235445912637654 1.05967678348552 479 0.60092049717512 2 2 0 -6.75116630366596 LTS-019 chr16 21152617 21185384 32768 * c(DNAH3, TMEM159) 0.494 1 NA 0.969099035845684 51 0.204288872749868 2 2 0 -5.76659099674623 LTS-019 chr16 21185385 29370683 8185299 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, ATP2A1-AS1, MIR548AA2, LCMT1-AS2, MIR4721, MIR4517, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ATXN2L, SGF29, SLC5A11, CLN3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, SH2B1, NUPR1, LAT, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, SBK1, CRYM-AS1, FLJ21408, SNX29P2, NDUFAB1, ATP2A1, IL21R, NA NA NA NA NA NA NA NA NA LTS-019 METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, POLR3E, PRKCB, APOBR, UBFD1, TMEM159, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, RRN3P2, LOC653786, SULT1A2, SULT1A1, MIR548D2, TUFM, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, RABEP2, SPNS1, DCTN5, NFATC2IP, COG7, CD19, HS3ST4, HS3ST2) 0.424341215759844 68 0.12927800708848 1.00754931820113 6162 0.258017300949402 2 1 1 -6.79862139090562 LTS-019 NA NA NA NA LTS-019 chr16 29370684 29375978 5295 * SNX29P2 NA 0 NA 0.805 1 NA NA NA NA NA LTS-019 chr16 29375979 29624801 248823 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3, SLC7A5P1) NA 0 NA 0.418103701427046 40 0.36863707397343 0 NA NA -5.90676046934456 LTS-019 chr16 29624802 31927308 2302507 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, NA NA NA NA NA NA NA NA NA LTS-019 CDIPT-AS1, YBX3P1, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MVP) 0.441855162162916 111 0.0915544717314304 0.990792985157822 5786 0.244561195749685 2 1 1 -6.83500171742618 LTS-019 NA NA NA NA LTS-019 chr16 31927309 32486856 559548 * c(ZNF267, LOC390705, NA, TP53TG3D) 0 1 NA 1.08781564795781 19 0.854603570761259 2 2 0 -5.76544745165317 LTS-019 chr16 32486857 34301478 1814622 * c(SLC6A10P, LOC390705, LINC00273) 0.309093436426068 83 0.116373849121398 1.05830638685537 361 0.599789787121284 3 2 1 -7.09919189548678 LTS-019 chr16 34301479 34682380 380902 * c(LINC01566, UBE2MP1) NA 0 NA 1.02690611246824 59 0.206939217790469 2 NA NA -5.76495594179574 LTS-019 chr16 46508169 46602819 94651 * ANKRD26P1 0.45 1 NA 1.10354936677358 97 0.335953591938568 2 2 0 -5.76633544983941 LTS-019 chr16 46602820 48172071 1569252 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, GPT2, MYLK3, ABCC12) 0.284744211935213 10 0.230896922649239 1.03032771671817 1185 0.282486979696357 2 1 1 -6.91689966053985 LTS-019 chr16 48172072 48201432 29361 * c(ABCC11, ABCC12) 0.477 1 NA 1.06063606049686 49 0.193129457216909 2 2 0 -5.76464299051178 LTS-019 chr16 48201433 57159248 8957816 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, CES1, CETP, NUDT21, ADCY7, C16orf78, SNX20, CYLD, CPNE2, CES5A, ZNF423, RPGRIP1L, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, BRD7, MT1DP, C16orf97, CES1P2, MIR138-2, MMP2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, CES1P1, LPCAT2, HEATR3, OGFOD1, BBS2, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, NA NA NA NA NA NA NA NA NA LTS-019 AKTIP, MT1IP, SIAH1, SLC6A2, SLC12A3, FTO, IRX6, IRX3, CHD9, LONP2, NLRC5, CAPNS2, MT4, ABCC11, NKD1, CBLN1, N4BP1, NUP93, HERPUD1) 0.423947386911774 130 0.115624546349575 1.02153546887306 5017 0.315286680440122 2 1 1 -6.7498854292475 LTS-019 NA NA NA NA LTS-019 chr16 57159249 57161845 2597 * CPNE2 NA 0 NA 0.861482470877225 13 0.15965423376464 2 NA NA -5.76651812282927 LTS-019 chr16 57161846 57168660 6815 * CPNE2 NA 0 NA 0.585 1 NA NA NA NA NA LTS-019 chr16 57168661 57180158 11498 * CPNE2 0.197 1 NA 0.585042339971876 17 0.120552953949218 1 1 0 -5.77198988375538 LTS-019 chr16 57180159 70161182 12981024 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, NA NA NA NA NA NA NA NA NA LTS-019 TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR140, MMP15, MIR328, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, POLR2C, PRMT7, DUS2, CHTF8, PDPR, SLC38A7, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, APOOP5, GINS3, NDRG4, ACD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, DRC7, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, CDH1) 0.236150523995478 177 0.0664910990718165 0.655638798880911 10088 0.75974703580771 1 1 0 -6.7745064232212 LTS-019 NA NA NA NA LTS-019 chr16 70161183 70161263 81 * c(CLEC18C, PDPR) 0.405 1 NA 1.826 1 NA NA NA NA NA LTS-019 chr16 70161264 70191100 29837 * c(CLEC18C, PDPR) 0.422136341538091 5 0.0272084545683874 1.19087988208093 108 0.275274016695933 2 1 1 -6.78626894477884 LTS-019 chr16 70191101 70208038 16938 * c(CLEC18C, PDPR) NA 0 NA 0.447 1 NA NA NA NA NA LTS-019 chr16 70208039 70726795 518757 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.178306010668329 20 0.0730478394075093 0.655475390179037 1090 0.172127576768091 1 1 0 -6.9159528042805 LTS-019 chr16 70726796 70874094 147299 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.688687968490937 173 0.16225781274072 1 NA NA -5.76891730374571 LTS-019 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.917 1 NA NA NA NA NA LTS-019 chr16 70883627 70884524 898 * HYDIN 0.357 1 NA 0.97955038460487 11 0.1715004903253 2 2 0 -5.76447026665133 LTS-019 chr16 70884525 71209486 324962 * HYDIN 0.349584987780057 83 0.0511443653433761 0.998040697620545 550 0.269948881259264 3 2 1 -7.07837144977299 LTS-019 chr16 71209487 71209582 96 * HYDIN NA 0 NA 0.722 1 NA NA NA NA NA LTS-019 chr16 71209583 71218926 9344 * HYDIN 0.329 1 NA 0.713968513106092 13 0.325462353567573 1 1 0 -5.76468988118384 LTS-019 chr16 71218927 71318001 99075 * c(HYDIN, CMTR2) 0.188 1 NA 0.711555993816595 53 0.143113099387357 1 1 0 -5.77832522857692 LTS-019 chr16 71318002 74384648 3066647 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, PHLPP2, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, ZFHX3, TXNL4B, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.238363936900864 53 0.0647364759679944 0.670245898578441 2220 0.173396704047136 1 1 0 -6.79142226419015 LTS-019 chr16 74384649 74385189 541 * LOC283922 NA 0 NA 0.873 1 NA NA NA NA NA LTS-019 chr16 74385190 74452124 66935 * c(LOC283922, CLEC18B) 0.341732814190885 3 0.139903538196859 1.15953788347772 40 0.481833727571702 3 2 1 -6.75347090421022 LTS-019 chr16 74452125 74485832 33708 * c(GLG1, CLEC18B) NA 0 NA 0.544 1 NA NA NA NA NA LTS-019 chr16 74485833 90108832 15623000 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, MLKL, NA NA NA NA NA NA NA NA NA LTS-019 ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, BANP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RFWD3, ZDHHC7, CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.219517541727252 261 0.0618479341723804 0.653652578229834 10473 0.283220724890947 1 1 0 -6.76120898740021 LTS-019 NA NA NA NA LTS-019 chr16 90108833 90161242 52410 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.672900647498796 134 0.254389340789743 1 NA NA -5.76449823952679 LTS-019 chr17 6004 6115 112 * DOC2B 0.139 1 NA 1.25907311163928 3 0.482113402980391 3 3 0 -5.76441384361785 LTS-019 chr17 6116 15469192 15463077 * c(MIR744, LOC100128288, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, NA NA NA NA NA NA NA NA NA LTS-019 USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, COX10, CLDN7, CRK, DNAH2, RTN4RL1, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF18, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.141933120233925 489 0.0600202305339744 1.01733382494645 19576 0.33864966735513 2 2 0 -6.76400071448091 LTS-019 NA NA NA NA LTS-019 chr17 15469193 15476237 7045 * TRIM16 0.247033303550014 3 0.130408333067076 0.584115382757624 57 0.303514832849069 1 1 0 -6.7612549372826 LTS-019 chr17 15476238 16638673 1162436 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.174600988456316 29 0.0827431779516411 0.971960179230167 1383 0.253860038401486 2 2 0 -6.87980324799059 LTS-019 chr17 16638674 16648947 10274 * c(USP32P1, CCDC144A) NA 0 NA 1.106 1 NA NA NA NA NA LTS-019 chr17 16648948 16734809 85862 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) 0.342008185071466 2 0.0473761543394987 1.93387624739466 39 0.833641250264795 6 4 2 -6.75364574682943 LTS-019 chr17 16734810 16734869 60 * KRT16P2 0.438 1 NA 1.041 1 NA NA NA NA NA LTS-019 chr17 16734870 18291559 1556690 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, KRT16P2, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.142773355618808 37 0.095330892049634 1.01640435129761 2680 0.267518926622058 2 2 0 -6.73884888296913 LTS-019 chr17 18291560 18314964 23405 * EVPLL 0.44 1 NA 0.907458436913957 5 0.440029885348711 2 2 0 -5.76570764327393 LTS-019 chr17 18314965 18378910 63946 * c(KRT17P5, KRT16P1) 0.096 1 NA 1.1221577412181 15 0.594162075050715 2 2 0 -5.76508129667655 LTS-019 chr17 18378911 18456633 77723 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.286093798381135 3 0.0820507972742089 0.133134622730082 65 0.206034242626354 0 0 0 -8.5328331124731 LTS-019 chr17 18456634 18456685 52 * CCDC144B NA 0 NA 0.009 1 NA NA NA NA NA LTS-019 chr17 18456686 18684642 227957 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, ZNF286B) 0.303345468213014 16 0.122627348771254 0.958307437212284 418 0.536511631909237 4 3 1 -6.91770559566798 LTS-019 chr17 18684643 18700843 16201 * TVP23B 0.175 1 NA 1.2198895697916 12 0.478377814424262 3 3 0 -5.76530780818074 LTS-019 chr17 18700844 21117589 2416746 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.15461375314604 39 0.0672018632059676 1.0210160973976 2132 0.281013939874477 2 2 0 -6.76466224418257 LTS-019 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.389 1 NA 0.916753782166843 34 0.162367239062736 2 2 0 -5.79111668374399 LTS-019 chr17 21194770 21202223 7454 * MAP2K3 0.367247343872725 10 0.0917620110212645 1.01767063901559 31 0.350399805445029 3 2 1 -6.7382160443376 LTS-019 chr17 21202224 21202237 14 * MAP2K3 0.442 1 NA 1.64 1 NA NA NA NA NA LTS-019 chr17 21202238 21318952 116715 * c(KCNJ12, MAP2K3) 0.379577218516354 62 0.090693625387237 1.34291760415216 150 0.47542970442314 3 2 1 -6.75383270851026 LTS-019 chr17 21318953 21319007 55 * KCNJ12 0.045 1 NA 2.05807817101998 3 0.100478853496644 5 5 0 -5.76441730217184 LTS-019 chr17 21319008 21320350 1343 * KCNJ12 0.30048178716616 20 0.0825934239767945 1.52370275580731 63 0.622216256326092 7 5 2 -6.73728744276178 LTS-019 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 1.052 1 NA NA NA NA NA LTS-019 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.271441718189441 14 0.112590281234978 1.0790433830489 210 0.434542714575464 3 2 1 -7.27123606569352 LTS-019 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.95 1 NA NA NA NA NA LTS-019 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.209 1 NA 0.69203884301855 17 0.211881296540137 1 1 0 -5.76463005091821 LTS-019 chr17 25630389 34433730 8803342 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, RFFL, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, TMEM199, PROCA1, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, LYRM9, RDM1, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, GAS2L2, NA NA NA NA NA NA NA NA NA LTS-019 HEATR9, TMEM98, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LGALS9, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, TBC1D3P5, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RAD51D, RPL23A, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, SNORD7, MIR632, TNFAIP1, VTN, ZNF207, MMP28, TEFM, ATAD5, TAF15, RAB34, NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, ZNF830, SLFN11, RASL10B, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100 NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ) 0.21390051767401 132 0.0758644925854862 0.649834476975336 10160 0.19123260457185 1 1 0 -6.80132280311467 LTS-019 NA NA NA NA LTS-019 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.275 1 NA NA NA NA NA LTS-019 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) 0.309 1 NA 0.241941386227802 40 0.245870009432752 0 0 0 -5.79819177808814 LTS-019 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.652 1 NA NA NA NA NA LTS-019 chr17 34842415 35549275 706861 * c(MIR2909, AATF, PIGW, ACACA, LHX1, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.221791231039351 9 0.0298011931155635 0.633633607859115 709 0.16867918810404 1 1 0 -6.77033016500609 LTS-019 chr17 35549276 35567336 18061 * ACACA 0 1 NA 0.742500963357405 31 0.233982716942848 1 1 0 -5.76688710191473 LTS-019 chr17 35567337 35592048 24712 * ACACA NA 0 NA 0.700963123476103 27 0.135625248302844 1 NA NA -5.76678783851265 LTS-019 chr17 35592049 35597319 5271 * ACACA NA 0 NA 1.244 1 NA NA NA NA NA LTS-019 chr17 35597320 36234012 636693 * c(DDX52, DUSP14, SYNRG, C17orf78, YWHAEP7, ACACA, TADA2A, HNF1B) 0.129102087279262 18 0.0619051826100766 0.986384155617135 790 1.12998690037617 2 2 0 -6.75343472046309 LTS-019 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.33 1 NA NA NA NA NA LTS-019 chr17 36351756 36398345 46590 * LOC440434 NA 0 NA 0.308195456632142 61 0.0916475757566806 0 NA NA -5.77608286865659 LTS-019 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.905 1 NA NA NA NA NA LTS-019 chr17 36421727 44159874 7738148 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-019 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.15267652199946 245 0.0695364905612281 1.01025426604023 15105 0.295934828268699 2 2 0 -6.78880420495157 LTS-019 NA NA NA NA LTS-019 chr17 44159875 44336603 176729 * character(0) 0.132791738566811 2 0.0176776695296637 0.723872269816749 49 0.247319378537146 2 2 0 -7.05640880698668 LTS-019 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.418 1 NA NA NA NA NA LTS-019 chr17 44336710 44782233 445524 * character(0) NA 0 NA 0.454255716353586 65 0.12396121252851 1 NA NA -7.58554732490365 LTS-019 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.05 1 NA NA NA NA NA LTS-019 chr17 44788332 45000565 212234 * c(WNT3, WNT9B, GOSR2) 0.117393292688093 2 0.0629325035256027 1.02166906468647 134 0.20548180200992 2 2 0 -6.81233698767052 LTS-019 chr17 45000566 45214482 213917 * c(MIR5089, RPRML, GOSR2, CDC27) 0.387 1 NA 0.942162765332506 149 0.20155028507394 2 2 0 -5.79353340741392 LTS-019 chr17 45214483 45229261 14779 * CDC27 0.35124429645326 12 0.114565946339242 0.943047092012099 42 0.396002822201607 3 2 1 -6.74846811220507 LTS-019 chr17 45229262 45266610 37349 * CDC27 0.127 1 NA 0.875828211056138 50 0.214858587571131 2 2 0 -5.77828287918063 LTS-019 chr17 45266611 48154817 2888207 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-019 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.13682489412431 77 0.0389888165959019 0.98111491136212 3926 0.35721861020803 2 2 0 -6.77973774145476 LTS-019 NA NA NA NA LTS-019 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.175 1 NA NA NA NA NA LTS-019 chr17 48155444 56435589 8280146 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, CA10, PCTP, SCPEP1, XYLT2, NA NA NA NA NA NA NA NA NA LTS-019 SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, ANKRD40, NOG, TSPOAP1) 0.144642691940821 92 0.0363036445912361 1.02792329048011 4928 0.270741689747589 2 2 0 -6.74715175612984 LTS-019 NA NA NA NA LTS-019 chr17 56435590 56448478 12889 * RNF43 0.091 1 NA 1.6104368170823 40 0.574641234229604 4 4 0 -5.76465607371871 LTS-019 chr17 56448479 56492648 44170 * RNF43 NA 0 NA 0.907 1 NA NA NA NA NA LTS-019 chr17 56492649 66970892 10478244 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR3064, MIR5047, DCAF7, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, C17orf47, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, KPNA2, YPEL2, NA NA NA NA NA NA NA NA NA LTS-019 C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, SEPT4, FAM20A, BCAS3, RNF43, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, MIR454, CACNG1, DHX40, LIMD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, MTMR4, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.141973748530034 114 0.054257819353812 0.989716093614108 7598 0.251568491458589 2 2 0 -6.94538422992072 LTS-019 NA NA NA NA LTS-019 chr17 66970893 72346790 5375898 * c(LINC00673, MIR4524A, MIR4524B, ABCA10, ABCA9, KIF19, SLC39A11, ABCA6, ABCA5, CDC42EP4, LINC00469, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, LOC400620, SDK2, C17orf80, MAP2K6, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, COG1, TTYH2) 0.126533069385555 47 0.0453958435178338 1.06857124502855 2030 0.322460005504679 2 2 0 -6.81504829624592 LTS-019 chr17 72346791 80363378 8016588 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-019 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TMEM94, EIF4A3) 0.146610360805598 356 0.0534682962502907 0.999242361159599 13184 0.356359828304129 2 2 0 -6.79389474245332 LTS-019 NA NA NA NA LTS-019 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 1.004 1 NA NA NA NA NA LTS-019 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.199131921665889 3 0.0351188458428425 1.9184664944264 39 0.84737843964371 6 5 1 -6.75263221461396 LTS-019 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.861 1 NA NA NA NA NA LTS-019 chr17 80391535 81043039 651505 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.15120054996121 23 0.0356121509662459 0.975740112766863 871 0.242050050288276 2 2 0 -6.81340423658887 LTS-019 chr17 81043040 81083625 40586 * METRNL NA 0 NA 0.990773179812985 23 0.206334823257097 2 NA NA -5.76561668664165 LTS-019 chr18 116845 121294 4450 * ROCK1P1 0.375 1 NA 1.33338211401432 31 0.276506532229514 3 3 0 -5.76452131174881 LTS-019 chr18 121295 3580513 3459219 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.35996263186043 45 0.0933259575007636 1.34828471954451 1830 0.42120706386034 3 2 1 -6.75758044432915 LTS-019 chr18 3580514 6302077 2721564 * c(MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LINC00667, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, L3MBTL4, DLGAP1) 0.356711157995338 24 0.0492005471573204 1.4633177906478 588 0.344546017180932 3 2 1 -6.76105267846561 LTS-019 chr18 6302078 6374417 72340 * c(MIR4317, L3MBTL4) 0 1 NA 1.72178439748876 9 2.01596772323148 4 4 0 -5.76442369016957 LTS-019 chr18 6374418 6986259 611842 * c(LINC01387, MIR4317, LAMA1, LINC00668, ARHGAP28, L3MBTL4) 0.255102601906516 12 0.143851775565453 1.50479223333455 390 0.612762701952256 4 3 1 -6.79754404776421 LTS-019 chr18 6986260 6992509 6250 * LAMA1 0.373 1 NA 1.30700545095408 5 0.0901731667404444 3 3 0 -5.76710113424616 LTS-019 chr18 6992510 8638334 1645825 * c(LOC100192426, RAB12, LAMA1, LRRC30, PTPRM) 0.347025621046858 7 0.050799325079881 1.46558274553195 461 0.280466254207396 3 2 1 -6.80973924400462 LTS-019 chr18 8638335 15005895 6367561 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.44812671311014 81 0.0819216258247954 1.03358248599434 3332 1.06915083987606 2 1 1 -6.83337681609987 LTS-019 chr18 15005896 15006193 298 * character(0) NA 0 NA 0.925127201073579 11 0.15782354934316 2 NA NA -5.76450390756154 LTS-019 chr18 18529727 19446687 916961 * c(MIR320C1, ESCO1, ABHD3, MIR1-2, MIR133A1, MIB1, ROCK1, SNRPD1, GREB1L) 0 1 NA 0.664782783110105 686 0.158651570623935 1 1 0 -5.76444869376138 LTS-019 chr18 19446688 74209649 54762962 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, LINC01630, MIR302F, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, MAPRE2, POLI, OSBPL1A, HAUS1, ALPK2, LOXHD1, INO80C, TTC39C, FAM69C, PSMA8, NA NA NA NA NA NA NA NA NA LTS-019 STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, DSG4, AQP4-AS1, ANKRD29, CYB5A, C18orf54, TCEB3C, DCC, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALNT1, RTTN, ZNF521, TPGS2, SETBP1, CABYR, GATA6, SNORD58B, SNORD58A, CDH20, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, HMSD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LOC284294, CDH19, TIMM21, GRP, ST8SIA5, C18orf8, RAX, CXXC1, LOC339298, CPLX4, AQP4, CCDC178, OACYLP, LAMA3, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MC4R, ME2, MEP1B, WBP11P1, MYO5B, NARS, NPC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, RBBP8, HRH4, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, CCDC102B, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, CHST9, C18orf21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MRO, HDHD2, ZNF397, CNDP1, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CABLES1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.219858238073238 335 0.0748097874536812 0.678282662738711 18549 0.293347005956858 1 1 0 -6.90354927873075 LTS-019 NA NA NA NA LTS-019 chr18 74209650 74210058 409 * C18orf65 NA 0 NA 0.691761699143394 9 0.0830347985953948 1 NA NA -5.76447013702685 LTS-019 chr18 74210059 74536176 326118 * c(LOC100131655, LINC00908, ZNF236) NA 0 NA 1.142 1 NA NA NA NA NA LTS-019 chr18 74536177 74638978 102802 * ZNF236 0.475 1 NA 0.962746874296063 127 0.192929332681876 2 2 0 -5.77362517147851 LTS-019 chr18 74638979 77898227 3259249 * c(RBFADN, TXNL4A, ADNP2, GALR1, KCNG2, SALL3, ATP9B, MBP, HSBP1L1, NFATC1, ZNF236, RBFA, PQLC1, CTDP1) 0.437820123307098 47 0.0552480320996035 1.00564569918018 1170 0.297530095278046 2 1 1 -6.86060404763029 LTS-019 chr18 77898228 77906025 7798 * c(PARD6G-AS1, ADNP2) NA 0 NA 0.624 1 NA NA NA NA NA LTS-019 chr18 77906026 77926862 20837 * c(PARD6G-AS1, PARD6G) 0.229839440837801 3 0.0150996688705415 0.644978500222789 89 0.197398538088893 1 1 0 -7.02426586709116 LTS-019 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.587103991095044 17 0.07618027187881 1 NA NA -5.88461383235958 LTS-019 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.494 1 NA 0.937860808854963 17 0.176530887982145 2 2 0 -5.79852826566965 LTS-019 chr19 282754 5455990 5173237 * c(C19orf71, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, CFD, ANKRD24, NA NA NA NA NA NA NA NA NA LTS-019 ARID3A, EEF2, EFNA2, ELANE, SBNO2, KDM4B, ZFR2, PIP5K1C, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, ODF3L2, MKNK2, GPX4, UHRF1, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, ONECUT3, MEX3D, PRSS57, CACTIN-AS1, MIR7-3, MATK, PLIN5, GADD45B, NFIC, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PRTN3, AZU1, NCLN, SPPL2B, SHD, PTBP1, WDR18, REXO1, PTPRS, ZNF77, CACTIN, CELF5, HCN2, RPS15, SGTA, LINGO3, ARRDC5, SH3GL1, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, PLPPR3, ZNF556, UBXN6, MADCAM1, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 RAX2, MUM1, MPND, ATCAY, PLPP2, S1PR4, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, REEP6, APBA3, CDC34) 0.443525387665222 282 0.0933175639380398 0.994057940918314 9391 0.322601576587531 2 1 1 -6.84481535005989 LTS-019 NA NA NA NA LTS-019 chr19 5455991 5696146 240156 * c(C19orf70, ZNRF4, TINCR, RPL36, HSD11B1L, SAFB, LONP1, SAFB2) 0.425 1 NA 1.0127362592817 335 0.193309631843625 2 2 0 -5.7666318705395 LTS-019 chr19 5696147 5892486 196340 * c(NDUFA11, PRR22, FUT3, FUT5, FUT6, CATSPERD, NRTN, DUS3L, LONP1) 0.287560831708754 9 0.207045553227088 1.01528471690392 397 0.338384021526544 3 2 1 -6.92091472854572 LTS-019 chr19 5892487 5892568 82 * c(NDUFA11, FUT5) 0.468 1 NA 1.05587090562686 3 0.151582760673281 2 2 0 -5.76441079744547 LTS-019 chr19 5892569 8651562 2758994 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, FUT5, KANK3, SLC25A41, MBD3L5, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, VMAC, CTXN1, MLLT1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, PSPN, RETN, NA NA NA NA NA NA NA NA NA LTS-019 GPR108, XAB2, MCOLN1, CAMSAP3, RFX2, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, ACSBG2, ADAMTS10, CLPP, CAPS, PRAM1, ALKBH7, ZNF414, FBN3, RANBP3, KHSRP, TNFSF14, TNFSF9, RAB11B, CRB3, PEX11G, TRIP10, CD70) 0.434060754361132 155 0.0823260461833576 1.0112992033409 4599 0.285625363323335 2 1 1 -6.78032032142433 LTS-019 NA NA NA NA LTS-019 chr19 8651563 8661467 9905 * ADAMTS10 0 1 NA 1.03964132351272 49 0.295814648255371 2 2 0 -5.76441046685904 LTS-019 chr19 8661468 9025014 363547 * c(ZNF558, ACTL9, OR2Z1, ADAMTS10, MBD3L1, MUC16) 0.300273436577478 21 0.16523759228687 1.03944293947676 457 0.634388556703862 3 2 1 -6.86834387901295 LTS-019 chr19 9025015 9028373 3359 * MUC16 0.486 1 NA 1.06847550512628 19 0.374818084530653 2 2 0 -5.7644226735649 LTS-019 chr19 9028374 9801726 773353 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, OR7D2, OR7E24, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, MUC16) 0.407949626667553 42 0.140671223594248 1.04085349523177 1550 0.667818596286425 2 1 1 -6.73428333689388 LTS-019 chr19 9801727 9805397 3671 * ZNF812P 0.496 1 NA 1.16565841670442 11 0.453465504351063 2 2 0 -5.76455577443785 LTS-019 chr19 9805398 16631322 6825925 * c(SNORD105B, ZGLP1, MIR1470, MIR1181, MIR1238, MIR4322, LOC100507373, ZNF625-ZNF20, AP1M2, MIR4748, DDX39A, ZNF443, AKAP8, CDKN2D, KLF2, CARM1, CHERP, RNASEH2A, KLF1, GIPC1, ILVBL, TMED1, CDC37, FDX1L, CYP4F8, NACC1, MISP3, PGLYRP2, CCDC151, ZNF653, CIB3, RLN3, RAVER1, CALR3, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, OR1I1, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ILF3-AS1, ZNF563, SPC24, LINC00905, NA NA NA NA NA NA NA NA NA LTS-019 ZNF846, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, DNASE2, DNM2, DNMT1, ELAVL3, ZNF627, DAND5, EPOR, FARSA, ADGRL1, MAST1, BRD4, CASP14, C19orf38, SYCE2, KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, SNORD41, AKAP8L, ZNF763, ZNF844, OR10H5, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, ICAM1, ICAM3, ICAM4, NANOS3, PALM3, ILF3, JUNB, TMEM205, C3P1, ZNF788, CLEC17A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CYP4F24P, OR7A10, LDLR, ZNF833P, CYP4F3, LYL1, MIR181C, MIR199A1, MAN2B1, RAB8A, ASNA1, NDUFB7, NFIX, NOTCH3, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, WDR83OS, PDE4A, ZNF44, PIN1, S1PR5, ACP5, BEST2, FBXL12, CC2D1A, C19orf66, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, PTGER1, MIR181D, ZNF490, DOCK6, CYP4F11, EPS15L1, WIZ, RAD23A, UBL5, RFX1, C19orf67, PLPPR2, RASAL3, KRI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SLC1A6, ZSWIM4, UCA1, SMARCA4, CYP4F12, SNORD105, PPAN-P2RY11, MIR638, MIR639, PRDX2, ICAM5, TPM4, ZNF812P, TYK2, ZNF878, ZNF20, ZNF69, ZNF136, CACNA1A, YIPF2, C19orf43, C19orf57, EPHX3, PODNL1, ZNF442, CALR, CCDC130, QTRT1, RTBDN, ANGPTL6, C19orf44, MRI1, FBXW9, WDR83, ELOF1, ZNF333, ADGRE3, HSH2D, ATG4D, CYP4F2, SYDE1, EIF3G, STX10, AP1M1, SAMD1, DCAF15, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZNF439, S1PR2, OLFM2, MED26, IL27RA, TECR, RAB3D, IER2, ADGRE5, KEAP1) 0.443980272327342 280 0.0961303614378359 1.00405271736888 11825 0.350399534620286 2 1 1 -6.82478357821105 LTS-019 NA NA NA NA LTS-019 chr19 16631323 16663433 32111 * c(CHERP, SLC35E1, C19orf44, MED26) 0 1 NA 0.943937724074867 109 0.254137506223141 2 2 0 -5.76706491842515 LTS-019 chr19 16663434 17286571 623138 * c(SIN3B, CPAMD8, NWD1, MYO9B, TMEM38A, SMIM7, SLC35E1, F2RL3, HAUS8, MED26) 0.351995069336523 12 0.20424198363409 1.008770018353 913 0.235521083923912 2 1 1 -6.79369326010314 LTS-019 chr19 17286572 17301880 15309 * MYO9B 0.454 1 NA 1.0144497683168 27 0.239308661204803 2 2 0 -5.76449001552544 LTS-019 chr19 17301881 19304899 2003019 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, CCDC124, NXNL1, LRRC25, ANKLE1, COMP, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, CRTC1, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, BORCS8-MEF2B, MYO9B, PDE4C, ISYNA1, PIK3R2, DDX49, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ANO8, RAB3A, UPF1, RPL18A, NA NA NA NA NA NA NA NA NA LTS-019 MRPL34, SLC5A5, BST2, LOC729966, BORCS8, UBA52, DDA1, KXD1, ABHD8, OCEL1, COLGALT1, KIAA1683, ELL, PLVAP, USHBP1, GTPBP3, MPV17L2, RFXANK, CRLF1, MVB12A, ARMC6, HOMER3, GDF15) 0.451115516723375 102 0.0580937994627002 1.01725654570015 4181 0.269272722651476 2 1 1 -6.97053428662883 LTS-019 NA NA NA NA LTS-019 chr19 19304900 19308005 3106 * RFXANK 0 1 NA 1.25618142855836 9 1.29281673531522 3 3 0 -5.76442515202894 LTS-019 chr19 19308006 20736677 1428672 * c(ZNF737, MIR1270, NR2C2AP, NCAN, CILP2, MAU2, LINC00663, YJEFN3, HAPLN4, ZNF506, NDUFA13, GMIP, TM6SF2, GATAD2A, ZNF253, ATP13A1, SUGP1, ZNF826P, ZNF14, ZNF90, PBX4, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ZNF101) 0.381419689773641 9 0.206533761028178 1.01203236050808 1559 0.280806351537629 2 1 1 -6.75487089271943 LTS-019 chr19 20736678 20808143 71466 * c(ZNF737, ZNF626) 0.475 1 NA 0.96894838872586 7 0.142942545900692 2 2 0 -5.77415745969173 LTS-019 chr19 20808144 23869823 3061680 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, ZNF493, ZNF429, ZNF728, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF708, ZNF43, ZNF85, ZNF91, ZNF99, ZNF208, ZNF430) 0.42337936317024 32 0.120965300109764 0.998486484819004 918 0.395657156014041 2 1 1 -6.75342713506588 LTS-019 chr19 23869824 24345121 475298 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.06918485209415 251 0.308170654073149 2 NA NA -5.7671535074647 LTS-019 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.496 1 NA 1.16151481246772 5 0.654128045569061 2 2 0 -5.78796917825296 LTS-019 chr19 29567135 35851141 6284007 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, LOC284395, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, UQCRFS1, USF2, KCTD15, PLEKHF1, NA NA NA NA NA NA NA NA NA LTS-019 CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.420665274640327 124 0.110316999067422 1.02054713680261 3531 0.345100947029207 2 1 1 -6.74342103554958 LTS-019 NA NA NA NA LTS-019 chr19 35851142 35863609 12468 * FFAR3 NA 0 NA 0.597387104122656 39 0.28149966621343 1 NA NA -5.765461942399 LTS-019 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.879 1 NA NA NA NA NA LTS-019 chr19 35863628 36342212 478585 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, UPK1A, ARHGAP33, HSPB6, COX6B1, PROSER3, U2AF1L4, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR2, SBSN, KRTDAP, NPHS1, ATP4A, PSENEN, LIN37, PRODH2, RBM42, IGFLR1, DMKN, KMT2B) 0.440422296336606 19 0.110615238525947 1.02582472943697 1427 0.240732068187971 2 1 1 -6.76679768377549 LTS-019 chr19 36342213 36348419 6207 * c(NPHS1, KIRREL2) 0 1 NA 1.03398948317383 21 0.602932500367993 2 2 0 -5.76441024213681 LTS-019 chr19 36348420 38102976 1754557 * c(LOC100134317, LINC00665, ZNF571-AS1, HCST, TBCB, COX7A1, ZNF420, ZNF565, ZNF569, ZNF570, ZNF567, ZNF383, SYNE4, ZNF540, ZNF585A, THAP8, ZNF345, CLIP3, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, APLP1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, POLR2I, ZFP14, ZNF529, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, LRFN3, CAPNS1, KIRREL2, ZNF527, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, NA NA NA NA NA NA NA NA NA LTS-019 ZNF585B) 0.335655742293285 15 0.219809332961871 1.01797737177617 2541 0.227835643755192 2 1 1 -6.81615808132491 LTS-019 NA NA NA NA LTS-019 chr19 38102977 38125673 22697 * c(ZNF540, ZFP30) 0.448 1 NA 1.05390938533043 55 0.347468326197422 2 2 0 -5.76443844302753 LTS-019 chr19 38125674 40376880 2251207 * c(LOC100129935, MIR4530, LOC100631378, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, ZNF573, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, ZNF781, EID2, ECH1, GGN, FBL, ZFP30, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, NA NA NA NA NA NA NA NA NA LTS-019 RYR1, C19orf33, CCER2, LOC644554, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, WDR87, ZNF607, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.431639828624984 63 0.106013283036776 1.01505602537648 4033 0.248282215437588 2 1 1 -6.75926644719643 LTS-019 NA NA NA NA LTS-019 chr19 40376881 40384094 7214 * FCGBP NA 0 NA 0.614 1 NA NA NA NA NA LTS-019 chr19 40384095 40405934 21840 * FCGBP 0.2 1 NA 0.408040262457304 39 0.259483107602218 0 0 0 -5.78681162972577 LTS-019 chr19 40405935 40406019 85 * FCGBP 0.452 1 NA 0.687 1 NA NA NA NA NA LTS-019 chr19 40406020 51455814 11049795 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LIPE-AS1, LOC101059948, NA NA NA NA NA NA NA NA NA LTS-019 TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, HNRNPUL1, CLASRP, KPTN, EGLN2, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, C19orf47, CRX, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, CCDC155, DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CYP2B7P, CYP2F1, AP2A1, DBP, ZNF296, DEDD2, ZNF114, ZNF780B, SPACA4, DMPK, DMWD, MEGF8, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, AKT2, FCGRT, ATF5, CARD8, CYP2G1P, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, PRG1, CBLC, NUP62, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 LYPD3, BBC3, DKKL1, C5AR2, DHDH, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, GPR32, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, C19orf81, APOC2, APOE, ZNF233, KLK3, IRF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KCNA7, KCNC3, B3GNT8, IGFL1, KCNJ14, KCNN4, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIPE, SIGLEC16, LOC400710, BCAM, MIR150, MAP3K10, PSG8, MIR330, IGFL4, MYBPC2, CEACAM6, ATP1A3, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, SHANK1, NOSIP, HSD17B14, VRK3, PLAUR, PTOV1, RAB4B, POLD1, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, ATP5SL, C19orf73, PNMAL1, TMEM143, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PPP5C, ASPDH, KLK15, AXL, SMG9, IRGC, CABP5, PRRG2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, SLC17A7, PSMC4, CD177, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, PRX, SPTBN4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RPS19, RRAS, RTN2, CLEC11A, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, NR1H2, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, MYH14, COQ8B, CNTD2, FUZ, OPA3, ITPKC, B9D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CALM3, RSPH6A, MED25, SYMPK, MIA, BCL2L12, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, SYT3, AKT1S1, CNFN, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, FCGBP, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, NAPSA, CD37, KLK4, DHX34, CD79A) 0.436603879901826 409 0.103422322340169 1.00556700577673 19527 0.271529290210056 2 1 1 -6.84648779681304 LTS-019 NA NA NA NA LTS-019 chr19 51455815 51480872 25058 * c(KLK5, KLK7, KLK6) 0 1 NA 1.17024339246676 35 0.59872784182083 2 2 0 -5.76501952513952 LTS-019 chr19 51480873 51988186 507314 * c(LOC100129083, KLK11, KLK8, CLDND2, VSIG10L, C19orf84, ETFB, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, KLK9, SIGLEC17P, SIGLECL1, LIM2, IGLON5, KLK14, KLK12, NKG7, KLK7, KLK10, CEACAM18, SIGLEC10, CTU1, CD33) 0.355749797413643 12 0.215395830127613 0.986460994675249 882 0.369652128629693 2 1 1 -6.78274309935031 LTS-019 chr19 51988187 51994813 6627 * SIGLEC12 0.429 1 NA 1.11632349246093 11 0.922705242011968 2 2 0 -5.76443527615825 LTS-019 chr19 51994814 52133652 138839 * c(LINC01530, ZNF175, SIGLEC5, SIGLEC12, SIGLEC6) 0.442570149374915 13 0.0594621189476425 0.987977154278792 344 0.258538622114812 2 1 1 -6.86817932251935 LTS-019 chr19 52133653 52133657 5 * SIGLEC5 NA 0 NA 1.523 1 NA NA NA NA NA LTS-019 chr19 52133658 52196631 62974 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.490479166220117 2 0.00636396103067893 1.71313693041446 43 0.752329157804799 4 2 2 -16.8985552883657 LTS-019 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 1.052 1 NA NA NA NA NA LTS-019 chr19 52196825 54742693 2545869 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, LILRB3, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, NA NA NA NA NA NA NA NA NA LTS-019 ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.446848392287602 148 0.0704029259345335 0.993133040791634 4134 0.408452078428663 2 1 1 -6.87554886901549 LTS-019 NA NA NA NA LTS-019 chr19 54742694 54743801 1108 * c(LILRB3, LILRA6) 0 1 NA 1.07475831858402 13 1.30485220206381 2 2 0 -5.76441062438902 LTS-019 chr19 54743802 54819035 75234 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA5, LILRA6) 0.269513219733806 9 0.176753359232576 1.04667354120983 247 0.530609626922168 4 3 1 -6.7868114750462 LTS-019 chr19 54819036 54844626 25591 * LILRA5 0.465 1 NA 1.01887413610162 29 0.562873626324615 2 2 0 -5.76442577655278 LTS-019 chr19 54844627 55045042 200416 * c(LENG8, CDC42EP5, LILRA4, LAIR1, LAIR2, TTYH1, KIR3DX1, LENG9) 0.447255249596937 16 0.117995480139425 0.968691864075793 456 0.263145731666089 2 1 1 -6.78746264508159 LTS-019 chr19 55045043 55055707 10665 * KIR3DX1 0 1 NA 0.992559119677096 44 0.157625930393279 2 2 0 -5.76491166876833 LTS-019 chr19 55055708 55401357 345650 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LILRP2) 0.337495498492455 60 0.118404215263184 1.09470690313366 612 0.950143231192218 3 2 1 -6.77542161366277 LTS-019 chr19 55401358 55418054 16697 * c(FCAR, NCR1) 0.422 1 NA 1.07176928921724 15 0.489416104975637 2 2 0 -5.76445470912725 LTS-019 chr19 55418055 59074653 3656599 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, NA NA NA NA NA NA NA NA NA LTS-019 PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.43955375792263 202 0.0813782101246971 1.01048925473082 7235 0.589092175782104 2 1 1 -6.79438457472173 LTS-019 NA NA NA NA LTS-019 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 1.00622947316593 35 0.144449741194273 2 NA NA -5.76465939653455 LTS-019 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.368 1 NA 0.920708307938369 39 0.336583256860647 2 2 0 -5.7696697162465 LTS-019 chr20 138126 940212 802087 * c(RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, DEFB128, RSPO4, DEFB132, ANGPT4, TRIB3, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2) 0.439850962007606 34 0.0885797424160198 0.990556206819101 1110 0.390650919037191 2 1 1 -6.78905994269519 LTS-019 chr20 940213 940494 282 * RSPO4 0 1 NA 1.09249711676779 7 1.72700751370136 2 2 0 -5.76441028634343 LTS-019 chr20 940495 1289098 348604 * c(RSPO4, C20orf202, TMEM74B, RAD21L1, PSMF1, SNPH) 0.326649823886208 9 0.198651076010174 1.02286400096457 399 0.381971705297082 2 1 1 -6.8480327361804 LTS-019 chr20 1289099 1292989 3891 * c(FKBP1A-SDCBP2, SDCBP2, SNPH) 0.418 1 NA 0.952756104657559 43 0.130667716168633 2 2 0 -5.76539902162601 LTS-019 chr20 1292990 1559302 266313 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, SIRPD, FKBP1A, SDCBP2, SIRPB2, NSFL1C) 0.44476323696646 10 0.0409384361640202 1.01471462204001 353 0.294782905409705 2 1 1 -7.04803676630777 LTS-019 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.08 1 NA NA NA NA NA LTS-019 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0527834976263437 39 0.0375675909081175 0 NA NA -12.8422538624778 LTS-019 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 0.979 1 NA NA NA NA NA LTS-019 chr20 1600391 5296651 3696261 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, SIRPB1, NOP56, CENPB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, PDYN, SMOX, C20orf27, AVP, AP5S1, SIRPG, PRNP, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, GFRA4, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, NA NA NA NA NA NA NA NA NA LTS-019 TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.447439370262065 129 0.0896688128777613 1.01209314206097 4425 0.267286038507464 2 1 1 -6.83243551055682 LTS-019 NA NA NA NA LTS-019 chr20 5296652 5454400 157749 * c(LINC00658, PROKR2, LOC643406) 0.318 1 NA 1.01929393896702 13 0.34863194169386 2 2 0 -5.76465007669494 LTS-019 chr20 5454401 5924781 470381 * c(CHGB, LINC00654, C20orf196, TRMT6, GPCPD1, LOC643406) 0.294580391205892 9 0.20204269350808 1.01697563023695 366 0.823418005164075 3 2 1 -6.84526796574869 LTS-019 chr20 5924782 5933108 8327 * c(TRMT6, MCM8) 0.394 1 NA 0.928374451019797 28 0.189275016169678 2 2 0 -5.76612724567252 LTS-019 chr20 5933109 6760331 827223 * c(LRRN4, CRLS1, FERMT1, BMP2, MCM8) 0.452528335744656 16 0.0280528519049312 1.00975779119368 440 0.256622051718162 2 1 1 -7.68388968576836 LTS-019 chr20 6760332 9461050 2700719 * c(PLCB1, PLCB4, HAO1, TMX4, BMP2) 0.430302034160131 17 0.0441198234757281 1.07130110819476 669 0.232831982690256 2 1 1 -6.84131236712112 LTS-019 chr20 9461051 9495017 33967 * c(LAMP5, PLCB4) 0 1 NA 1.18913486016463 19 0.687866270322912 2 2 0 -5.76521327149342 LTS-019 chr20 9495018 10036746 541729 * c(SNAP25-AS1, LAMP5, PAK5, ANKEF1) 0.397441548169432 10 0.19466578196146 1.10459104363857 240 0.279067751705282 2 1 1 -6.75397382287399 LTS-019 chr20 10036747 10386013 349267 * c(SNAP25-AS1, ANKEF1, SNAP25, MKKS) 0.482 1 NA 1.10091848068068 85 0.329509448651629 2 2 0 -5.77123088340672 LTS-019 chr20 10386014 14308112 3922099 * c(ISM1-AS1, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, FLRT3, LOC339593, ESF1, SPTLC3, TASP1, NDUFAF5, SEL1L2, MKKS) 0.474304045033744 22 0.02769613253824 1.08149388609527 1147 0.294224203979417 2 1 1 -8.76361401010839 LTS-019 chr20 14308113 17489733 3181621 * c(MACROD2-AS1, MACROD2, FLRT3, PCSK2, KIF16B, OTOR, BFSP1, SNRPB2) 0.460580811565748 5 0.0211849002829846 1.05465278594943 617 0.969905691324779 2 1 1 -8.74084667978412 LTS-019 chr20 17489734 17495257 5524 * BFSP1 0 1 NA 0.931896836306791 9 0.584107224745594 2 2 0 -5.76452174372433 LTS-019 chr20 17495258 17970965 475708 * c(DSTN, BANF2, SNX5, RRBP1, BFSP1, SNORD17, MGME1) 0.35977156771157 9 0.205982402160961 0.984036759234824 365 0.29105001127327 2 1 1 -6.78422388666993 LTS-019 chr20 17970966 17971553 588 * MGME1 0.448 1 NA 0.73200609002153 17 0.243859831967175 1 1 0 -5.76446661645698 LTS-019 chr20 17971554 25595123 7623570 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, PET117, MIR3192, CST8, SEC23B, POLR3F, RBBP9, CSTL1, CST9L, CST9, LINC00261, NANP, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, NINL, CFAP61, ABHD12, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, DZANK1, KIZ, APMAP, RALGAPA2, KAT14, SLC24A3, NA NA NA NA NA NA NA NA NA LTS-019 PYGB, OVOL2, NAPB, GZF1, NKX2-4, SSTR4, THBD, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.458909376452269 104 0.055571294592385 1.04315904389475 3982 0.281685029130761 2 1 1 -7.09774071066916 LTS-019 NA NA NA NA LTS-019 chr20 25595124 25595466 343 * NANP 0.291 1 NA 0.873967062299714 7 0.162118710180152 2 2 0 -5.76463943113561 LTS-019 chr20 25595467 26188981 593515 * c(LOC100134868, NANP, NCOR1P1, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.378806893327718 29 0.0943378923393696 1.05729097512113 218 0.562764622179046 2 1 1 -6.81742060911514 LTS-019 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.928738224282171 3 0.0444559707276012 2 NA NA -5.76455123061322 LTS-019 chr20 29625845 29625876 32 * FRG1BP 0.294 1 NA 1.561 1 NA NA NA NA NA LTS-019 chr20 29625877 29633938 8062 * FRG1BP 0.399310972271394 13 0.0745772702019136 1.19089125987953 30 0.35389221035751 5 3 2 -6.74734718890646 LTS-019 chr20 29633939 29633952 14 * FRG1BP 0.241 1 NA 1.695 1 NA NA NA NA NA LTS-019 chr20 29633953 29978212 344260 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, FRG1BP) 0.153507320506864 9 0.160508566749566 1.21550643494631 91 0.627415498934166 2 2 0 -6.75022843151418 LTS-019 chr20 29978213 30038038 59826 * c(DEFB119, DEFB121, DEFB122, DEFB123) 0.487 1 NA 1.10881050837113 36 0.382377253881182 2 2 0 -5.76549964245471 LTS-019 chr20 30038039 31238627 1200589 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, TSPY26P, NOL4L, CCM2L, LINC00028, LOC149950, TTLL9, ASXL1, TPX2, FOXS1, POFUT1, DEFB123, DEFB124, C20orf203, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.450474176915436 31 0.0311970842310003 1.01385869898264 1881 0.221073289918321 2 1 1 -7.45346351949811 LTS-019 chr20 31238628 31372491 133864 * c(COMMD7, DNMT3B, C20orf203) 0 1 NA 0.992883076739476 113 0.33761995199459 2 2 0 -5.76576199538443 LTS-019 chr20 31372492 31480918 108427 * c(DNMT3B, MAPRE1) 0.281831535752759 10 0.243043228893773 1.04734415401991 248 0.497335757433855 4 3 1 -6.80753913040029 LTS-019 chr20 31480919 31619578 138660 * c(BPIFB6, SUN5, BPIFB2) 0.442 1 NA 1.03106383096246 239 0.194950861056072 2 2 0 -5.76449086392796 LTS-019 chr20 31619579 35519475 3899897 * c(TGIF2-C20orf24, MIR499B, MIR4755, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, CEP250, PXMP4, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, BPIFB4, ACTL10, E2F1, AHCY, EPB41L1, DLGAP4, RALY, NCOA6, AAR2, TRPC4AP, GGT7, GSS, BPIFA4P, BPIFB3, EIF6, ASIP, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, UQCC1, EDEM2, ACSS2, C20orf24, NDRG3, MIR499A, MYH7B, NA NA NA NA NA NA NA NA NA LTS-019 TP53INP2, TGIF2, NECAB3, NORAD, SNTA1, SPAG4, MIR644A, DSN1, GDF5, DYNLRB1, ITCH, SLA2, MAP1LC3A, ZNF341, EIF2S2, CPNE1, NFS1, CBFA2T2, BPIFB1, RBM39) 0.44058693783014 104 0.0980829840049075 1.01029839322433 5670 0.267277250914075 2 1 1 -6.79843297643735 LTS-019 NA NA NA NA LTS-019 chr20 35519476 35519946 471 * TLDC2 0.455 1 NA 1.05902657769932 11 0.397655995691114 2 2 0 -5.76441089777445 LTS-019 chr20 35519947 36531611 1011665 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, MROH8, TLDC2, SAMHD1, GHRH, NNAT, CTNNBL1, RBL1, RPN2, MANBAL, SRC) 0.242818965080065 9 0.242901100130165 0.993293766126182 860 0.341469802843769 2 2 0 -6.84779221084438 LTS-019 chr20 36531612 36573629 42018 * VSTM2L 0.486 1 NA 1.17215927284849 47 0.278814697465295 2 2 0 -5.76924763013083 LTS-019 chr20 36573630 62907506 26333877 * c(ADA, ACOT8, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, TRERNA1, SGK2, ARFRP1, OGFR-AS1, RGS19, SYCP2, WFDC2, NA NA NA NA NA NA NA NA NA LTS-019 CEBPB, ARFGEF2, TCFL5, SPINT3, TOMM34, SERINC3, ADRM1, OGFR, UBE2C, DIDO1, PTPRT, PKIG, HRH3, TP53RK, RBPJL, CHRNA4, DNTTIP1, FAM210B, PHACTR3, BHLHE23, NKAIN4, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, SLC32A1, ZBTB46, WFDC3, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, RBBP8NL, R3HDML, CSE1L, CSTF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, EYA2, ZHX3, SLC9A8, ADNP, ZMYND8, SPO11, PRPF6, C20orf166-AS1, WFDC11, WFDC9, L3MBTL1, SS18L1, PPP1R16B, MTG2, GMEB2, SNORD12C, SNORA71B, SNORA71A, TP53TG5, MOCS3, GNAS, WFDC10B, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, HNF4A, LOC339568, ARHGAP40, KCNB1, KCNG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KCNQ2, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, LAMA5, SPINT4, SUMO1P1, LBP, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ZFAS1, MYBL2, MYT1, NFATC2, NTSR1, OPRL1, STMN3, SLC35C2, PRELID3B, PCK1, IFT52, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, RTEL1, PFDN4, PI3, PLCG1, PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, PCMTD2, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, ARFGAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 DOK5, DBNDD2, RNF114, SULF2, SLC2A4RG, PSMA7, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, PTPN1, NCOA5, RPRD1B, CDH26, KCNK15, DHX35, RPS21, SDC4, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, BPI, SRMS, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, TAF4, TCEA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SNORD12, MIR645, MIR647, TFAP2C, TGM2, TNNC2, TOP1, TPD52L2, UBE2V1, YWHAB, SYS1-DBNDD2, HAR1A, HAR1B, MKRN7P, ZNF217, GDAP1L1, LINC01260, FNDC11, PPDPF, TTPAL, BIRC7, NPEPL1, ACTR5, DNAJC5, PABPC1L, TUBB1, ZBP1, SLC2A10, FAM83D, CABLES2, NCOA3, CHD6, PARD6B, ZGPAT, RAE1, TOX2, BCAS1, HELZ2, KIAA1755, STX16, TNFRSF6B, MATN4, DPM1, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TTI1, SPATA2, OSBPL2, MAFB) 0.448395622433734 524 0.0771987955399 1.01045912916991 22074 0.262458518868484 2 1 1 -7.00164917257796 LTS-019 NA NA NA NA LTS-019 chr20 62907507 62959313 51807 * c(LINC00266-1, PCMTD2) NA 0 NA 0.881653111347636 11 0.351894663991165 2 NA NA -5.77104110246183 LTS-019 chr21 9825764 9825769 6 * character(0) 0.363 1 NA 2.081 1 NA NA NA NA NA LTS-019 chr21 9825770 9907340 81571 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.378732235542944 3 0.107686272724676 0.505563875442741 38 0.710943245779698 0 0 0 -6.82817403425612 LTS-019 chr21 9907341 9907375 35 * TEKT4P2 0.493 1 NA 2.784 1 NA NA NA NA NA LTS-019 chr21 9907376 11059877 1152502 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.321491261337276 32 0.112221802083656 1.11523016654044 148 0.954116232570562 3 2 1 -6.85559024110854 LTS-019 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.16240711576008 7 0.263919089332859 2 NA NA -5.76874763182862 LTS-019 chr21 14745307 14756794 11488 * character(0) 0.375 1 NA 1.02264060262732 9 0.659882754737537 2 2 0 -5.76441336039345 LTS-019 chr21 14756795 48063476 33306682 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3156-3, MIR3197, ITGB2-AS1, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, RNU6-67P, BRWD1-AS1, SAMSN1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, BTG3, HSF2BP, ADAMTS5, NA NA NA NA NA NA NA NA NA LTS-019 LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CHODL, CRYAA, CSTB, LIPI, ABCC13, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 D21S2088E, LINC00307, LINC00515, KRTAP13-4, LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, USP25, DNMT3L, DONSON, HUNK, HLCS, HMGN1, POTED, AIRE, PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, LINC00317, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, ANKRD20A11P, LINC00114, LSS, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, RBM11, PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, NA, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, SAMSN1, LOC642852, GRIK1-AS1, KRTAP24-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, SON, SNORA80A, HSPA13, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, NRIP1, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.441461338478231 552 0.0844239988415262 1.00197096419393 19265 0.563584423559453 2 1 1 -6.86907201925355 LTS-019 NA NA NA NA LTS-019 chr21 48063477 48084993 21517 * PRMT2 NA 0 NA 0.949548808141026 77 0.243005544803395 2 NA NA -5.76611927938458 LTS-019 chr22 16157787 16157827 41 * character(0) 0.333 1 NA 0.838 1 NA NA NA NA NA LTS-019 chr22 16157828 17662163 1504336 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, HSFY1P1, CECR6, CECR5, TPTEP1, CECR1, OR11H1) 0.366049529106986 15 0.187464155303913 1.0182973918923 733 0.370543610181209 2 1 1 -6.77485477171194 LTS-019 chr22 17662164 17669306 7143 * CECR1 0.408 1 NA 1.04359961149998 25 0.315432438619324 2 2 0 -5.76441169127761 LTS-019 chr22 17669307 18273323 604017 * c(MIR3198-1, BCL2L13, CECR3, CECR2, CECR1, ATP6V1E1, MICAL3, BID, SLC25A18) 0.171466654967932 9 0.219231295920795 1.05927862469351 597 0.393113375910204 2 2 0 -6.74614085857869 LTS-019 chr22 18273324 18300240 26917 * MICAL3 0.497 1 NA 1.14755480861101 33 0.158774825069208 2 2 0 -5.77093401650537 LTS-019 chr22 18300241 19959485 1659245 * c(FLJ41941, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, COMT, LINC00895, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, GSC2, ARVCF, TUBA8, GNB1L, PEX26, PRODH, MICAL3, MRPL40, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, DGCR2) 0.452888763520973 83 0.0791468410663289 1.03034251341876 2343 0.253701577926154 2 1 1 -6.87272957839716 LTS-019 chr22 19959486 19960606 1121 * ARVCF 0.224 1 NA 1.0435503353769 21 0.192768155836907 2 2 0 -5.76441077804355 LTS-019 chr22 19960607 20052532 91926 * c(TANGO2, MIR185, ARVCF) 0.309108620192915 9 0.185979837616877 1.1147535110611 167 0.529665770363931 4 3 1 -6.78215895133375 LTS-019 chr22 20052533 20052566 34 * TANGO2 0.373 1 NA 1.866 1 NA NA NA NA NA LTS-019 chr22 20052567 40080978 20028412 * c(DDTL, MIR301B, LOC100128531, MIR1286, MIR1306, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, IGLL5, TOM1, MIR3909, MIR3653, MIR3618, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, TUBA3FP, PIK3IP1, ELFN2, C1QTNF6, TANGO2, ZNF280A, SGSM1, NA NA NA NA NA NA NA NA NA LTS-019 EMID1, ANKRD54, ADORA2A, CRKL, APOBEC3D, SELENOM, ZNF280B, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CCDC116, CABP7, TMPRSS6, APOBEC3H, DDT, RNF215, APOBEC3A, APOBEC3F, EWSR1, MORC2, HIC2, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, PRAME, SLC16A8, SEC14L2, RBFOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SEZ6L, RASD2, PATZ1, SH3BP1, SDF2L1, PPIL2, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, GSTTP1, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, POM121L1P, TXN2, TMEM184B, GGA1, FBXW4P1, SEC14L3, POM121L4P, RGL4, GGT1, SNORD43, GGT5, TRMT2A, INPP5J, CYTH4, RSPH14, APOBEC3C, GNAZ, LOC284865, MIF-AS1, TTC28-AS1, SEC14L4, GSTT1, POM121L9P, CARD10, UQCR10, POM121L8P, YPEL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 ZDHHC8, VPREB3, H1F0, SERPIND1, HMOX1, SLC35E4, LOC339666, TEX33, IGLL1, IL2RB, PI4KAP2, KCNJ4, SDC4P, CCDC188, LRRC75B, LOC391322, LGALS1, LGALS2, LIF, LIMK2, LRRC74B, BCRP2, CHCHD10, LOC400927, SRRD, MIR130B, MB, MCM5, MFNG, MGAT3, MIF, MMP11, MN1, MPST, THAP7-AS1, P2RX6P, PIWIL3, MIAT, MYH9, ATF4, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, DRICH1, EIF3L, RTCB, MTFP1, PDGFB, MED15, UPB1, PI4KA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 POLR2F, MIEF1, DGCR8, TUG1, CCDC157, MAPK1, ZMAT5, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, PVALB, RAC2, RANBP1, RFPL1, APOBEC3G, RPL3, BCR, BCRP3, TMEM191C, ADORA2A-AS1, POM121L10P, FAM227A, LL22NC03-63E9.3, CES5AP1, RTN4R, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SLC7A4, SMARCB1, SLC2A11, SNRPD3, SOX10, SSTR3, TCN2, TIMP3, TOP1P2, MIR650, MIR658, MIR659, TST, TMEM191B, PI4KAP1, NA, SEC14L6, UBE2L3, VPREB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 XBP1, YWHAH, ZNF70, ZNF74, NOL12, KCTD17, FOXRED2, BAIAP2L2, THAP7, APOL6, APOL5, APOL4, APOL3, LZTR1, SYN3, GUCD1, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TMEM191A, TPST2, C22orf23, MYO18B, GALR3, KLHL22, NIPSNAP1, DGCR6L, KIAA1656, RIMBP3, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, TOP3B, HPS4, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, LARGE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SNAP29, PICK1, GAL3ST1, GTPBP1, APOBEC3B, RAB36, PPM1F, BMS1P20, DEPDC5, SFI1, JOSD1) 0.439683569797432 628 0.0796950181426708 1.0110812534688 22351 0.326013735083192 2 1 1 -6.86649991798777 LTS-019 NA NA NA NA LTS-019 chr22 40080979 40343296 262318 * c(ENTHD1, CACNA1I, GRAP2) NA 0 NA 0.953786819161806 173 0.170003044736815 2 NA NA -5.80257302246387 LTS-019 chr22 40343297 40351723 8427 * GRAP2 NA 0 NA 0.731 1 NA NA NA NA NA LTS-019 chr22 40351724 40552119 200396 * c(LOC100130899, FAM83F, TNRC6B, GRAP2) 0.123 1 NA 0.625938917092308 157 0.140610444117559 1 1 0 -5.78541924762977 LTS-019 chr22 40552120 42524832 1972713 * c(NDUFA6-AS1, MIR1281, MIR4766, SLC25A17, TOB2, TNFRSF13C, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, WBP2NL, POLR3H, EP300, TNRC6B, ZC3H7B, XRCC6, CSDC2, DESI1, SGSM3, MCHR1, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, MKL1, RANGAP1, XPNPEP3, SREBF2, ST13, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, SMDT1, RBX1) 0.223064239865933 78 0.0847513895773871 0.646271628977467 3736 0.182740921601448 1 1 0 -6.75992788141247 LTS-019 chr22 42524833 42538811 13979 * c(NDUFA6-AS1, CYP2D7, CYP2D6) 0.166622503942973 11 0.126336707398775 1.08700395292219 73 0.423931182670951 2 2 0 -6.75902204448328 LTS-019 chr22 42538812 42538885 74 * CYP2D7 0.188 1 NA 0.22 1 NA NA NA NA NA LTS-019 chr22 42538886 51206426 8667541 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, NA NA NA NA NA NA NA NA NA LTS-019 RRP7A, MCAT, LOC284933, RPL23AP82, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.217679076124189 337 0.0601145978288215 0.66450439629163 8524 0.227893470815563 1 1 0 -6.73343101527454 LTS-019 NA NA NA NA LTS-019 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.5768782938898 51 0.0965095586041133 1 NA NA -5.78269028554464 LTS-019 chrX 2699993 2700027 35 * XG 0.486 1 NA 1.208 1 NA NA NA NA NA LTS-019 chrX 2700028 12725717 10025690 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.41826006502174 52 0.117713613150584 1.04808183946585 2828 0.316184334507793 2 1 1 -6.74006559884586 LTS-019 chrX 12725718 13613120 887403 * c(GS1-600G8.3, LINC01203, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.470162314522886 12 0.0541352822831727 0.934583711914889 592 0.185894571667055 2 1 1 -7.47444561256423 LTS-019 chrX 13613121 37701208 24088088 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, DDX53, FAM47B, NA, SUPT20HL2, TCEANC, ARX, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, EGFL6, GK, NA NA NA NA NA NA NA NA NA LTS-019 GLRA2, GPM6B, CFAP47, MAGEB18, GRPR, SH3KBP1, CA5BP1, LANCL3, DCAF8L2, MAGEB5, MAP3K15, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, NHS, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, GEMIN8, TXLNG, PRRG1, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, TRAPPC2, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, DYNLT3, LOC729609, XK, ZFX, APOO, S100G, CXorf21, KLHL15, ZRSR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 TMEM47, OFD1, PIR, INE2, AP1S2, REPS2, RAB9A, SYAP1, PCYT1B) 0.419731183796768 93 0.13830043402472 1.0568070908714 9574 0.257076923009799 2 1 1 -6.80856386009793 LTS-019 NA NA NA NA LTS-019 chrX 37701209 37893344 192136 * c(HYPM, DYNLT3, SYTL5) 0 1 NA 1.04946870607962 57 0.209993963990113 2 2 0 -5.76476310247682 LTS-019 chrX 37893345 41782358 3889014 * c(LOC100132831, ATP6AP2, CXorf38, DDX3X, GPR82, GPR34, LINC01281, MPC1L, OTC, BCOR, MID1IP1, NYX, RPGR, TSPAN7, USP9X, SRPX, CASK, MED14, SYTL5) 0.360608031857692 8 0.207797978815964 1.04779674938544 1871 0.241560846558014 2 1 1 -6.77691252560413 LTS-019 chrX 41782359 41782609 251 * character(0) NA 0 NA 0.619 1 NA NA NA NA NA LTS-019 chrX 41782610 47862104 6079495 * c(SNORA11C, UXT-AS1, MIR4769, FUNDC1, ELK1, ZNF81, ARAF, LOC392452, CXXC1P1, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, CDK16, CFP, NDUFB11, KRBOX4, CHST7, ZNF630, RP2, DUSP21, ZNF674, SYN1, TIMP1, LINC01545, UBA1, KDM6A, ZNF182, ZNF41, ZNF157, CXorf36, EFHC2, PPP1R2P9, USP11, RBM10, UXT, SLC9A7, INE1, RGN, JADE3) 0.192775720077972 23 0.0728702621020004 0.698333096475929 2800 0.180181413527417 1 1 0 -7.08444844633782 LTS-019 chrX 47862105 47916569 54465 * c(SPACA5, ZNF630, ZNF182) NA 0 NA 1.251 1 NA NA NA NA NA LTS-019 chrX 47916570 47970738 54169 * c(SSX6, SPACA5, ZNF630) 0.159933920910524 3 0.204961785055979 1.18719043939901 72 0.204290336215516 2 2 0 -6.75266170716416 LTS-019 chrX 47970739 47976446 5708 * c(SSX6, SPACA5) NA 0 NA 0.731 1 NA NA NA NA NA LTS-019 chrX 47976447 49126656 1150210 * c(HDAC6, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, FTSJ1, GATA1, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, KCND1, SPACA5, GLOD5, PRICKLE3, TBC1D25, FOXP3, PLP2, OTUD5, GRIPAP1, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYP, TFE3, SLC35A2, WAS, CACNA1F, MAGIX, PPP1R3F, CCDC120, SLC38A5) 0.218216331151146 28 0.0674432546115072 0.699086943043851 2485 0.181130658702822 1 1 0 -6.78870687778607 LTS-019 chrX 49126657 49173748 47092 * c(NA, PPP1R3F) NA 0 NA 0.703852123927814 93 0.162947846568349 1 NA NA -5.76804168276095 LTS-019 chrX 49173749 49369554 195806 * c(GAGE12F, GAGE8, GAGE12D, GAGE1, GAGE2C, GAGE4, GAGE2E, NA, GAGE2B, GAGE13, GAGE12J, GAGE2D, GAGE2A) NA 0 NA 0.921 1 NA NA NA NA NA LTS-019 chrX 49369555 49458781 89227 * c(GAGE1, PAGE1) 0.493 1 NA 1.0114707666504 21 0.10381744508878 2 2 0 -5.76757742674467 LTS-019 chrX 49458782 56292257 6833476 * c(MIR500B, MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, CLCN5, DGKK, FOXR2, PAGE3, USP27X-AS1, RIBC1, USP51, XAGE3, XAGE5, NUDT10, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, MAGEH1, HSD17B10, ITIH6, USP27X, PAGE2B, MIRLET7F2, MIR188, MIR98, SPANXN5, PFKFB1, GPR173, GNL3L, FAM120C, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, TSPYL2, WNK3, XAGE1B, SNORA11, MIR532, TRO, MIR660, NA NA NA NA NA NA NA NA NA LTS-019 FAM156B, MAGED4B, KDM5C, SMC1A, CCNB3, PAGE1, AKAP4, TSR2, FAM104B, PAGE5, BMP15, MAGED1, PAGE4) 0.370365091800946 45 0.130470167649408 1.0476867845373 4507 0.304629295589133 2 1 1 -6.80480332979264 LTS-019 NA NA NA NA LTS-019 chrX 56292258 57937169 1644912 * c(KLF8, FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA) NA 0 NA 1.03675268732359 471 0.244338842502126 2 NA NA -5.76441551647439 LTS-019 chrX 61999880 62893847 893968 * c(SPIN4, ARHGEF9, LINC01278) 0 1 NA 1.09218229638962 181 0.382663369541946 2 2 0 -5.77411487179597 LTS-019 chrX 62893848 70146398 7252551 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, ASB12, AWAT1, AWAT2, DLG3, EDA, EFNB1, ARHGEF9, KIF4A, FAM155B, YIPF6, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, GDPD2, MTMR8, ZC4H2, TEX11, EDA2R, PJA1, LAS1L, FRMD8P1, SLC7A3, STARD8, HEPH) 0.451199124299702 26 0.0969715342847501 1.04311668464407 3135 0.237516393360068 2 1 1 -6.82081712199044 LTS-019 chrX 70146399 70322431 176033 * c(SNX12, FOXO4, SLC7A3) 0 1 NA 1.00806715739014 157 0.304278405464487 2 2 0 -5.76534500446996 LTS-019 chrX 70322432 77303467 6981036 * c(MIR374B, FTX, MIR374C, CDX4, COX7B, MAP2K4P1, UPRT, MAGEE2, CXorf65, ZDHHC15, ABCB7, ITGB1BP2, GJB1, INGX, CXCR3, TTC3P1, RGAG4, NHSL2, PABPC1L2A, KIAA2022, IL2RG, ZCCHC13, FLJ44635, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, CITED1, NAP1L2, NONO, MIR384, RLIM, PBDC1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, ATRX, ERCC6L, JPX, HDAC8, MAGEE1, BCYRN1, RPS4X, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, NA NA NA NA NA NA NA NA NA LTS-019 TAF1, MIR421, XIST, MAGT1, OGT, FGF16, ZMYM3, TSIX, ACRC, MED12) 0.299706078136578 13 0.235966941404718 1.04959936900712 4475 0.251160725720051 2 1 1 -6.88056125334081 LTS-019 NA NA NA NA LTS-019 chrX 77303468 77304308 841 * ATP7A 0.487 1 NA 1.11723178854129 17 0.126933487678066 2 2 0 -5.76458230433143 LTS-019 chrX 77304309 79928258 2623950 * c(MIR4328, CYSLTR1, FAM46D, ZCCHC5, BRWD3, P2RY10, LPAR4, TBX22, TAF9B, PGK1, ATP7A, GPR174, ITM2A) 0.460127993828179 16 0.036881284775163 1.02450757222127 656 0.215813021582104 2 1 1 -7.54406439786147 LTS-019 chrX 79928259 79945270 17012 * BRWD3 0 1 NA 1.08813442017396 125 0.261723923247379 2 2 0 -5.76475057278609 LTS-019 chrX 79945271 82764804 2819534 * c(BRWD3, POU3F4, SH3BGRL, HMGN5) 0.443157407270667 2 0.0325269119345812 1.09587202120224 277 0.27609498264026 2 1 1 -7.23632386479954 LTS-019 chrX 82764805 83116097 351293 * character(0) NA 0 NA 1.87 1 NA NA NA NA NA LTS-019 chrX 83116098 85236824 2120727 * c(UBE2DNL, CHM, APOOL, HDX, CYLC1, RPS6KA6, SATL1, ZNF711, POF1B) 0.162210208946592 9 0.164223932482449 1.4721671370487 854 0.484952003258626 3 3 0 -6.81918240969886 LTS-019 chrX 85236825 85282462 45638 * CHM NA 0 NA 0.73 1 NA NA NA NA NA LTS-019 chrX 85282463 101439808 16157346 * c(ARMCX4, RPL36A-HNRNPH2, CHM, DACH2, TCEAL2, PABPC5, CSTF2, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, PCDH11X, FAM133A, RPA4, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, CPXCR1, TAF7L, ARMCX6, NXF5, KLHL4, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, ZMAT1, TGIF2LX, SYTL4, ARMCX2) 0.215624198194851 36 0.0861616421119547 0.714770984645961 3351 1.13412207773991 1 1 0 -6.77479069305085 LTS-019 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.087 1 NA NA NA NA NA LTS-019 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.294153845092745 43 0.306154768003386 0 NA NA -5.764565986922 LTS-019 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.708 1 NA NA NA NA NA LTS-019 chrX 101768565 117775167 16006603 * c(LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, DOCK11, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, NA NA NA NA NA NA NA NA NA LTS-019 LINC00890, GLRA4, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, WDR44, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 AMMECR1) 0.205904016792637 53 0.0943262257541442 0.70181892872012 7215 0.182877885553899 1 1 0 -7.52092288418733 LTS-019 NA NA NA NA LTS-019 chrX 117775168 117775173 6 * DOCK11 NA 0 NA 0.646 1 NA NA NA NA NA LTS-019 chrX 117775174 154286043 36510870 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, CSAG4, LINC00893, SMIM9, CXorf51B, LINC00894, NA, NA, MIR320D2, SLC25A5-AS1, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, LINC00629, MAGEA10-MAGEA5, HS6ST2-AS1, BCAP31, MAGEA8-AS1, TENM1, CDR1, SLC9A6, ENOX2, CETN2, STAG2, PLAC1, UTP14A, ZNF275, NA NA NA NA NA NA NA NA NA LTS-019 PGRMC1, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, DCAF12L1, ADGRG4, GAB3, PNCK, ZFP92, ACTRT1, GPR119, DOCK11, TEX28, CSAG1, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, NA, NA, DKC1, DNASE1L1, DUSP9, ELF4, EMD, SLC25A43, INTS6L, ZNF449, VMA21, ABCD1, F8, F9, GPC4, FGF13, FHL1, SEPT6, FLNA, FMR1, AFF2, ATP1B4, LDOC1, G6PD, CT47A11, GABRA3, GABRE, FAM127B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 OPN1MW, SRPK3, GDI1, SNORA70, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, PNMA3, HCFC1, CTAG2, HMGB3, HPRT1, XIAP, DCAF12L2, IDH3G, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IRAK1, L1CAM, LOC389895, UBE2NL, LAMP2, ARHGAP4, SMIM10L2A, SH2D1A, MIR105-1, MIR105-2, MIR106A, MIR19B2, MIR92A2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MAGEA8, MAGEA10, MAGEA11, MAGEA12, MCF2, MECP2, MPP1, FAM127C, CT45A3, CT45A5, SPANXN4, MTM1, NDUFA1, ATP2B3, SPANXN1, SPANXN2, MIR424, OCRL, NSDHL, ZDHHC9, TFDP3, MAGEC2, VGLL1, RBMX2, STK26, PLXNB3, ATP6AP1, CT45A6, CT45A1, CXorf40B, SASH3, CT55, TMEM255A, AVPR2, MIR450A1, SAGE1, PLXNA3, HAUS7, ZNF280C, MBNL3, GABRQ, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR452, MIR450A2, MIR503, MIR504, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, PDZD4, RAP2C, OPN1LW, RENBP, FAM3A, RPL10, RPL39, SPANXA2-OT1, BCORL1, BGN, CXorf56, CT47B1, SMIM10, SMIM10L2B, SPANXC, UPF3B, CT47A7, SLC6A8, SMARCA1, FUNDC2, MIR542, SOX3, SRD5A1P1, SSR4, SNORA36A, SNORA56, BRS3, TAZ, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-019 MIR767, MIR766, RNF113A, ZNF185, PRRG3, NKAP, MAP7D3, LONRF3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, GPR101, CD99L2, USP26, PHF6, CUL4B, TMEM185A, SLITRK2, MIR503HG, IKBKG, MTMR1, APLN, FAM127A, FATE1, SLC25A14, HS6ST2, FRMD7, FAM50A, AIFM1, TMEM257, CXorf40A, FAM58A, GPR50, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.203994757665476 217 0.0868589393044161 0.685914997639855 17401 0.205716631521224 1 1 0 -7.2567706928962 LTS-019 NA NA NA NA LTS-019 chrX 154286044 154774986 488943 * c(CMC4, RAB39B, CLIC2, MTCP1, TMLHE, VBP1, BRCC3) NA 0 NA 0.664829340549088 409 0.168846750642559 1 NA NA -5.76443025198469 LTS-019 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.296449362196085 25 0.208959629274812 0 NA NA -5.76832984663682 LTS-019 chrY 13309514 13310602 1089 * character(0) 0.143 1 NA 0.635757706644815 7 0.512462820951084 1 1 0 -5.76441479828469 LTS-019 chr1 65893 878314 812422 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.429 1 NA 1.04163156120154 89 0.295169317850288 3 3 0 -5.80649106085142 LTS-020 chr1 878315 1271093 392779 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, DVL1, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, SDF4, CPSF3L, C1orf159, MIR429, HES4, SCNN1D, TNFRSF4, CPTP, TAS1R3, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.44726897352302 18 0.0409402561687564 1.02918015876256 1660 0.250559731894063 4 2 2 -7.71571168844086 LTS-020 chr1 1271094 1274738 3645 * DVL1 0 1 NA 0.990544523380836 36 0.165018332314928 3 3 0 -5.7645185226719 LTS-020 chr1 1274739 1582961 308223 * c(MIB2, LOC148413, DVL1, ATAD3C, SSU72, TMEM240, ANKRD65, MXRA8, AURKAIP1, MRPL20, ATAD3A, TMEM88B, FNDC10, VWA1, CCNL2, ATAD3B, MMP23B, CDK11B) 0.318471703904915 9 0.197096916374773 1.02881898253628 1062 0.29054355442537 4 3 1 -6.77634949221826 LTS-020 chr1 1582962 1583003 42 * CDK11B 0.459 1 NA 1.07428185136149 3 0.5770184861279 4 4 0 -5.76441079452099 LTS-020 chr1 1583004 1603048 20045 * c(SLC35E2B, CDK11B) 0.382693934223769 7 0.0730065228657849 1.02270822234051 155 0.292605259044406 4 2 2 -6.74713745867625 LTS-020 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.616 1 NA NA NA NA NA LTS-020 chr1 1606859 1639066 32208 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.429219753937435 5 0.0437298525037531 0.708594414828643 85 0.260998431475158 2 1 1 -7.12535614586319 LTS-020 chr1 1639067 1639575 509 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.382 1 NA NA NA NA NA LTS-020 chr1 1639576 1646772 7197 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.363666935420455 39 0.299883614401045 0 NA NA -5.76796883729455 LTS-020 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.862 1 NA NA NA NA NA LTS-020 chr1 1647807 10725498 9077692 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4417, UBE4B, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, TPRG1L, FAM213B, CORT, ACTRT2, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, TNFRSF9, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, NA NA NA NA NA NA NA NA NA LTS-020 MIR34A, LINC00982, RERE, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, ERRFI1, HES2, CASZ1, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, SLC2A5, NADK, MIR551A, TP73, CDK11A, SLC35E2B, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, THAP3, VAMP3, H6PD, PLCH2, CEP104, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CDK11B, KLHL21, SLC35E2) 0.423394816587199 242 0.112133029612286 1.02657463615677 9013 0.342912066920128 3 2 1 -7.12330195619899 LTS-020 NA NA NA NA LTS-020 chr1 10725499 11137565 412067 * c(MASP2, C1orf127, TARDBP, EXOSC10, CASZ1, SRM) 0 1 NA 1.00281877112432 331 0.313413042516201 3 3 0 -5.77046147101916 LTS-020 chr1 11137566 11740358 602793 * c(MTOR-AS1, ANGPTL7, MAD2L2, MTOR, FBXO2, FBXO6, UBIAD1, EXOSC10, DISP3, FBXO44) 0.324231971243721 9 0.225184800651475 1.02739158541267 889 0.394668198727638 3 2 1 -6.76545127337705 LTS-020 chr1 11740359 11740812 454 * MAD2L2 0.489 1 NA 0.999774861014459 9 0.135558105622644 3 3 0 -5.7644414557587 LTS-020 chr1 11740813 12170288 429476 * c(NPPA-AS1, MAD2L2, CLCN6, DRAXIN, MTHFR, NPPA, NPPB, PLOD1, AGTRAP, MIIP, KIAA2013, TNFRSF8, MFN2) 0.44485947214482 36 0.085167379551578 1.01146953756134 1131 0.227513137657716 4 2 2 -7.06709443110072 LTS-020 chr1 12170289 12253316 83028 * c(MIR4632, TNFRSF1B, TNFRSF8) 0 1 NA 0.999044054731556 113 0.421586285226734 3 3 0 -5.76498489099093 LTS-020 chr1 12253317 12907370 654054 * c(AADACL3, AADACL4, HNRNPCL1, PRAMEF12, PRAMEF11, VPS13D, HNRNPCL3, PRAMEF1, SNORA59B, TNFRSF1B, DHRS3, C1orf158) 0.139790634047236 10 0.19705566049554 1.01586629219489 860 0.367004353148182 3 3 0 -6.74491674989378 LTS-020 chr1 12907371 12907379 9 * c(HNRNPCL1, HNRNPCL3) 0.483 1 NA 1.962 1 NA NA NA NA NA LTS-020 chr1 12907380 12921110 13731 * c(HNRNPCL1, HNRNPCL3, PRAMEF2) 0.408374923307776 10 0.0796665969316292 1.11528580020742 44 0.566215485672765 4 2 2 -6.75630585283353 LTS-020 chr1 12921111 12921127 17 * PRAMEF2 0.386 1 NA 2.743 1 NA NA NA NA NA LTS-020 chr1 12921128 13447824 526697 * c(PRAMEF9, PRAMEF10, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, PRAMEF2, PRAMEF22) 0.250726036148327 9 0.127732576546123 1.34094359772084 34 1.14143714530608 5 4 1 -6.73668063880681 LTS-020 chr1 13447825 13910417 462593 * c(PDPN, LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, PRAMEF19, PRAMEF20, NA) 0.485 1 NA 0.964595654001424 65 0.313087798726713 3 3 0 -5.76470448546923 LTS-020 chr1 13910418 16862454 2952037 * c(PDPN, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.446343503596561 111 0.0812371993318489 1.03591679169865 3235 2.99569104603385 4 2 2 -6.98741083215129 LTS-020 chr1 16862455 16862461 7 * character(0) 0.378 1 NA 0.956 1 NA NA NA NA NA LTS-020 chr1 16862462 16978916 116455 * c(MST1P2, NBPF1, CROCCP2) 0.319552090846495 18 0.0914559074447132 1.07351692393212 139 0.346204336938798 4 3 1 -6.74962459836923 LTS-020 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.845 1 NA NA NA NA NA LTS-020 chr1 17009684 17012093 2410 * character(0) 0.378494801429821 6 0.124985465821697 2.00456567180976 57 0.407515446299194 10 6 4 -6.73374808901362 LTS-020 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.177 1 NA NA NA NA NA LTS-020 chr1 17017583 17273493 255911 * c(MST1L, ESPNP, CROCC) 0.318350614289082 46 0.0709801802641988 1.34297808911477 304 0.57651252121704 4 3 1 -6.75603011366634 LTS-020 chr1 17273494 17274945 1452 * CROCC NA 0 NA 1.50329635181417 5 0.246414894030373 5 NA NA -5.76447336774183 LTS-020 chr1 17274946 17275407 462 * CROCC NA 0 NA 0.845 1 NA NA NA NA NA LTS-020 chr1 17275408 17282573 7166 * CROCC 0.468 1 NA 0.934952211093932 35 0.142305447317151 3 3 0 -5.7645039077965 LTS-020 chr1 17282574 22313103 5030530 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, CELA3B, PADI4, AKR7L, ALPL, TMCO4, PLA2G2D, PADI1, PLA2G2E, HSPG2, HTR6, LINC01141, PADI6, PLA2G2C, SH2D5, LDLRAD2, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, CAMK2N1, RCC2, KIF17, RAP1GAP, SDHB, RPS14P3, NA NA NA NA NA NA NA NA NA LTS-020 PLA2G2F, PINK1, MUL1, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, ALDH4A1, EIF4G3, CROCC, CDA) 0.441911963212421 147 0.0737283704693012 1.04979039506665 6230 0.275558079667911 4 2 2 -7.49379592032754 LTS-020 NA NA NA NA LTS-020 chr1 22313104 22315710 2607 * CELA3B 0.422 1 NA 0.925662009259358 9 0.357367457947698 3 3 0 -5.76442190318657 LTS-020 chr1 22315711 22315738 28 * CELA3B 0.24 1 NA 3.97 1 NA NA NA NA NA LTS-020 chr1 22315739 22315776 38 * CELA3B NA 0 NA 0.467 1 NA NA NA NA NA LTS-020 chr1 22315777 22336686 20910 * c(CELA3A, CELA3B) 0.153038410975527 4 0.0694376218870817 0.50293587065 60 0.505301353280514 3 3 0 -6.75832615921494 LTS-020 chr1 22336687 22336714 28 * CELA3A 0 1 NA 4.571 1 NA NA NA NA NA LTS-020 chr1 22336715 22919904 583190 * c(CELA3A, EPHA8, LINC00339, WNT4, ZBTB40, CDC42) 0.189804061728667 3 0.252302067635866 1.04151773111852 365 0.28338962818678 3 3 0 -6.78332116866455 LTS-020 chr1 22919905 22920100 196 * EPHA8 0.434 1 NA 0.9495791318117 5 0.190514303924928 3 3 0 -5.76441023195107 LTS-020 chr1 22920101 35227362 12307262 * c(FAM229A, MATN1-AS1, MIR1976, MIR3115, MIR4253, MIR4254, MIR3917, MIR3605, TCEB3-AS1, MIR4420, MIR4684, MIR378F, RCAN3AS, PTPRU, WASF2, HNRNPR, SRRM1, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RCAN3, LYPLA2, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, CNR2, MYOM3, GJB4, HMGB4, RNF19B, A3GALT2, COL16A1, ZNF436-AS1, DCDC2B, ZNF362, LINC01225, PDIK1L, IFNLR1, PAQR7, E2F2, PHC2, FAM76A, TXLNA, EPB41, AK2, NA NA NA NA NA NA NA NA NA LTS-020 EPHA8, EPHB2, EXTL1, EYA3, FABP3, FGR, DNAJC8, KDM1A, WDTC1, TMEM50A, KPNA6, STX12, FUCA1, FNDC5, IFI6, ZNF683, GALE, MDS2, CLIC4, SYF2, LDLRAP1, RNU11, GJB5, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, LOC284632, HCRTR1, HDAC1, HMGN2, HMGCL, HPCA, HTR1D, MTMR9LP, ZBTB8OS, ID3, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, NCMAP, CSMD2-AS1, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, TRIM62, PEF1, ASAP3, PNRC2, PIGV, IQCC, TMEM234, MTFR1L, RSRP1, PITHD1, MAN1C1, NIPAL3, SELENON, PTAFR, ADGRB2, KIAA1522, GRHL3, IL22RA1, RBBP4, RHCE, RHD, RPA2, RPL11, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, TCEA3, SNORA16A, SNORD103C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SNORD99, SNORD103A, TCEB3, C1QA, C1QB, C1QC, ZBTB8B, C1orf234, ZSCAN20, SLC30A2, LUZP1, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, ZNF436, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, C1orf94, SNHG12, FCN3, YARS, RUNX3, EIF3I, STPG1, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.423678644343196 244 0.119507230148423 1.02278732651455 14570 0.27524598404881 3 2 1 -7.30129545693506 LTS-020 NA NA NA NA LTS-020 chr1 35227363 35319550 92188 * c(SMIM12, GJB4, GJA4, GJB3) 0.361 1 NA 1.0672824282775 117 0.226279950446486 4 4 0 -5.77541860292621 LTS-020 chr1 35319551 36299701 980151 * c(TMEM35B, SMIM12, C1orf216, AGO4, NCDN, TFAP2E, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.095655214378882 9 0.205496417919578 1.02669669793548 1376 0.356666501099196 3 3 0 -6.79392485374736 LTS-020 chr1 36299702 36645971 346270 * c(COL8A2, AGO3, AGO4, AGO1, TRAPPC3, TEKT2, ADPRHL2, MAP7D1) 0.468 1 NA 1.00264258733775 755 0.236158149895533 3 3 0 -5.77329814259728 LTS-020 chr1 36645972 36937065 291094 * c(OSCP1, CSF3R, EVA1B, MAP7D1, MRPS15, SH3D21, STK40, LSM10, THRAP3) 0.436672668515994 11 0.0363458138142232 1.00730667067223 547 0.196823058211635 4 2 2 -7.615593981076 LTS-020 chr1 36937066 37266282 329217 * c(CSF3R, GRIK3) 0 1 NA 1.02974053460135 145 0.466786803296538 3 3 0 -5.76958002281495 LTS-020 chr1 37266283 38338618 1072336 * c(MIR4255, MIR5581, C1orf122, MANEAL, RSPO1, EPHA10, GRIK3, GNL2, INPP5B, MTF1, C1orf109, CDCA8, MEAF6, LINC01137, DNALI1, YRDC, SNIP1, ZC3H12A) 0.297232300704957 9 0.248216695203562 1.04655957599782 1181 0.327592287465577 4 3 1 -6.81997850733121 LTS-020 chr1 38338619 38338795 177 * INPP5B 0.493 1 NA 1.02106471969765 3 0.184459570999537 3 3 0 -5.76442410329785 LTS-020 chr1 38338796 40145842 1807047 * c(MIR3659, GJA9-MYCBP, SF3A3, FHL3, MACF1, MYCBP, HEYL, LINC01343, BMP8A, INPP5B, NDUFS5, UTP11, HPCAL4, POU3F1, RHBDL2, RRAGC, KIAA0754, SNORA55, PPIEL, AKIRIN1, NT5C1A, PABPC4) 0.435110782132223 33 0.0854142313030499 1.01190818734861 1966 0.249013571792873 3 2 1 -7.16666639197553 LTS-020 chr1 40145843 40147501 1659 * HPCAL4 0 1 NA 1.16238496663688 37 1.18795727721686 4 4 0 -5.76441030802264 LTS-020 chr1 40147502 41285591 1138090 * c(NFYC-AS1, ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, ZFP69, MIR30C1, MIR30E, MYCL, NFYC, HPCAL4, TRIT1, PPT1, RLF, OXCT2, SMAP2, EXO5, ZFP69B, BMP8B, MFSD2A, KCNQ4, RIMS3) 0.29291152708418 15 0.197858102112167 0.9989062016935 1631 0.382608039131818 3 2 1 -6.82198754681243 LTS-020 chr1 41285592 41466803 181212 * c(CTPS1, CITED4, KCNQ4) 0.468 1 NA 1.03970527981994 167 0.223320722951906 3 3 0 -5.78018651382674 LTS-020 chr1 41466804 47902286 6435483 * c(LOC100129924, EFCAB14-AS1, KDM4A-AS1, SLFNL1-AS1, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, CYP4Z2P, DPH2, EDN2, CYP4Z1, SLFNL1, FAAH, FOXJ3, SCMH1, FOXE3, FOXD2, MAST2, SZT2, MMACHC, CYP4X1, BEST4, SNORD55, NA NA NA NA NA NA NA NA NA LTS-020 CYP4A22, RIMKLA, GUCA2A, GUCA2B, C1orf228, TCTEX1D4, IPP, SVBP, TEX38, NSUN4, LINC01144, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, YBX1, PRDX1, ZNF691, TMEM69, CMPK1, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, P3H1, ATPAF1, ELOVL1, ST3GAL3, STIL, SLC2A1, SLC6A9, TAL1, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, HECTD3, PPCS, HYI, ZMYND12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RAD54L, FOXD2-AS1, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14, CDC20) 0.449867233917267 194 0.0684095941827699 1.04037014322543 8207 0.251317389592544 3 2 1 -7.95099552511179 LTS-020 NA NA NA NA LTS-020 chr1 47902287 47902886 600 * FOXD2 0.466 1 NA 1.04247756982245 13 0.265366920628971 3 3 0 -5.76444951608577 LTS-020 chr1 47902887 50906847 3003961 * c(ELAVL4, SLC5A9, FOXD2, TRABD2B, SKINT1L, SPATA6, DMRTA2, BEND5, AGBL4) 0.278123198726442 9 0.235602949896643 1.06154484170685 831 0.309088474855415 4 3 1 -6.94845662575532 LTS-020 chr1 50906848 51873951 967104 * c(CDKN2C, FAF1, EPS15, TTC39A, RNF11, C1orf185) 0.498 1 NA 1.02732899736711 553 0.224975224865043 3 3 0 -5.82522672684044 LTS-020 chr1 51873952 52375872 501921 * c(MIR761, OSBPL9, EPS15, NRDC, RAB3B) 0.465651567628158 9 0.0239484399863076 0.984685316584476 473 0.233076530193735 4 2 2 -10.0595745778769 LTS-020 chr1 52375873 52376067 195 * RAB3B 0 1 NA 1.62615050627843 5 1.82647890762527 6 6 0 -5.76441013520716 LTS-020 chr1 52376068 53361778 985711 * c(KTI12, CC2D1B, ZCCHC11, GPX7, FAM159A, ZYG11A, ORC1, TXNDC12, ECHDC2, RAB3B, COA7, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.204373946165649 9 0.220614482752153 1.02439015422406 1522 0.330438116976343 3 3 0 -6.80059456486914 LTS-020 chr1 53361779 53544439 182661 * c(PODN, ECHDC2, SCP2) 0.45 1 NA 1.02320624463291 317 0.211518450555804 3 3 0 -5.77611201200266 LTS-020 chr1 53544440 54231418 686979 * c(LOC100507564, PODN, CPT2, GLIS1, SLC25A3P1, MAGOH, C1orf123, NDC1, DMRTB1, SLC1A7, LRP8) 0.458128475381944 13 0.0191746360243595 1.05850794108714 535 0.223463314791287 4 2 2 -10.438951907557 LTS-020 chr1 54231419 54275465 44047 * NDC1 0 1 NA 1.04813298536683 97 0.358554075000289 3 3 0 -5.76619721221033 LTS-020 chr1 54275466 55103456 827991 * c(MIR4781, LRRC42, TCEANC2, DIO1, CDCP2, SSBP3, ACOT11, FAM151A, LDLRAD1, MRPL37, HSPB11, YIPF1, NDC1, CYB5RL, TMEM59) 0.357487031338844 15 0.205985390143041 1.0048649697075 889 0.276514286067238 3 2 1 -6.75082964852983 LTS-020 chr1 55103457 55119289 15833 * c(MROH7-TTC4, MROH7) 0.433 1 NA 1.17015403597259 31 0.314431841256096 4 4 0 -5.76441795389013 LTS-020 chr1 55119290 62677723 7558434 * c(LINC01135, LOC100507634, MROH7-TTC4, MIR4422, MIR4711, PATJ, MYSM1, OMA1, C1orf87, CYP2J2, DAB1, LEXM, DHCR24, C1orf168, TMEM61, USP24, PCSK9, PARS2, JUN, MROH7, TACSTD2, MGC34796, NFIA, HOOK1, L1TD1, TTC22, FGGY, PRKAA2, TTC4, HSD52, C8A, C8B, BSND, TM2D1, PLPP3) 0.40829396470982 88 0.121210547126012 1.05918880075933 3291 0.358494748783593 4 2 2 -7.13305473855653 LTS-020 chr1 62677724 62703398 25675 * c(KANK4, L1TD1) 0 1 NA 1.20775111417432 19 1.02935046799665 4 4 0 -5.76441756255572 LTS-020 chr1 62703399 64125611 1422213 * c(KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, PGM1, USP1, DLEU2L, EFCAB7, ATG4C, DOCK7) 0.330802327248705 14 0.211861205343664 1.02952150861915 958 0.288672008208851 3 2 1 -6.80654785739738 LTS-020 chr1 64125612 64643363 517752 * c(ROR1, PGM1) 0.447 1 NA 1.02017502959675 87 0.190894640311208 3 3 0 -5.80155740685321 LTS-020 chr1 64643364 66103627 1460264 * c(MIR3671, MIR4794, UBE2U, AK4, JAK1, LEPR, MIR101-1, ROR1, LEPROT, RAVER2, CACHD1, DNAJC6) 0.418489737671227 12 0.138050605565386 1.02456995704115 1138 0.30383495566438 3 2 1 -6.86731475027471 LTS-020 chr1 66103628 67442275 1338648 * c(INSL5, MIR3117, TCTEX1D1, PDE4B, MIER1, WDR78, SGIP1) 0.463079791979246 33 0.0270936926574836 0.956056263237954 789 0.288975696436449 4 2 2 -9.69722185840291 LTS-020 chr1 67442276 67447450 5175 * MIER1 0.385 1 NA 0.975926487177886 5 0.280581182547939 3 3 0 -5.76442900285616 LTS-020 chr1 67447451 70397087 2949637 * c(GNG12-AS1, MIR1262, IL23R, GADD45A, SLC35D1, SERBP1, IL12RB2, C1orf141, PIN1P1, DEPDC1, GNG12, LRRC7, MIER1, RPE65, WLS, DIRAS3) 0.370314531109981 34 0.177633966918516 0.997591378148983 1254 0.370565715933146 3 2 1 -6.75814792479135 LTS-020 chr1 70397088 70452061 54974 * LRRC7 0 1 NA 1.11996911373357 15 0.620184649922908 4 4 0 -5.76464969883638 LTS-020 chr1 70452062 71869354 1417293 * c(ZRANB2-AS1, ZRANB2-AS2, HHLA3, CTH, NEGR1, MIR186, LRRC40, PTGER3, LRRC7, ANKRD13C, SRSF11, ZRANB2) 0.240391256473455 15 0.234091821626431 0.997714369977279 896 0.425248108120947 3 3 0 -6.83692740265101 LTS-020 chr1 71869355 71873154 3800 * NEGR1 0.496 1 NA 1.02968765862512 77 0.180665434758487 3 3 0 -5.76480816059948 LTS-020 chr1 71873155 77555481 5682327 * c(PIGK, FPGT-TNNI3K, NEGR1-IT1, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, ST6GALNAC5, FPGT) 0.443993320655845 50 0.0960708178419249 1.05591456705301 1735 0.328391179714528 4 2 2 -7.27038826686335 LTS-020 chr1 77555482 77619548 64067 * PIGK 0.473 1 NA 1.02545020924798 69 0.317675708742388 3 3 0 -5.76634991327448 LTS-020 chr1 77619549 78343765 724217 * c(PIGK, USP33, ZZZ3, AK5, MIGA1) 0.191652808820186 9 0.236915479537417 0.994231348252176 539 0.3903327087959 3 3 0 -6.75932461700255 LTS-020 chr1 78343766 78392446 48681 * c(MIGA1, NEXN) 0.5 1 NA 0.962990519055583 29 0.149873690662202 3 3 0 -5.76450476085851 LTS-020 chr1 78392447 89322926 10930480 * c(LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, GNG5, GTF2B, LINC01140, CYR61, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.427710607506893 73 0.135135656797915 1.00293227551078 3995 0.281063686678925 3 2 1 -7.0522615014346 LTS-020 chr1 89322927 93306317 3983391 * c(GLMN, GBP4, GBP5, GBP6, HFM1, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.378341193910328 46 0.168465184407604 0.935593689161871 2690 0.357204166552607 3 2 1 -6.74430331446445 LTS-020 chr1 93306318 93307736 1419 * c(SNORA66, FAM69A, RPL5) 0 1 NA 0.919083211810221 9 0.744512051241915 3 3 0 -5.76441236698562 LTS-020 chr1 93307737 93913894 606158 * c(CCDC18-AS1, DR1, MTF2, CCDC18, FAM69A, TMED5, FNBP1L) 0.278075375741773 7 0.218059624873565 0.94148825848827 544 0.294745291399107 3 2 1 -6.8285596035078 LTS-020 chr1 93913895 93964951 51057 * FNBP1L NA 0 NA 1.202 1 NA NA NA NA NA LTS-020 chr1 93964952 94473807 508856 * c(MIR760, LOC100129046, ABCA4, GCLM, DNTTIP2, FNBP1L, BCAR3) 0.229900407105903 2 0.303348809129029 0.976431412055423 480 0.237301631474852 3 3 0 -6.78066555276577 LTS-020 chr1 94473808 94473845 38 * ABCA4 0.424 1 NA 0.921182743841619 3 0.109831689416124 3 3 0 -5.76441250048203 LTS-020 chr1 94473846 100503892 6030047 * c(LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, CNN3, SLC44A3, TMEM56, PLPPR5, AGL, DPYD, ALG14, F3, SLC35A3, ABCA4, RWDD3, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, PALMD, PTBP2, ABCD3, MFSD14A, LOC729970, LOC729987, ARHGAP29, PLPPR4) 0.427167859285712 42 0.108449116185397 1.00022176687321 2007 0.253857157703587 3 2 1 -7.0404566427771 LTS-020 chr1 100503893 100548694 44802 * MFSD14A 0 1 NA 0.98433611103322 79 0.313767897356039 3 3 0 -5.76466336010804 LTS-020 chr1 100548695 109363186 8814492 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, HENMT1, OLFM3, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, FNDC7, SASS6, S1PR1, EXTL2, NTNG1, AKNAD1, AMY2A, AMY2B, FAM102B, SLC25A24, DPH5, GPR88, TRMT13, PRPF38B, PRMT6, RNPC3, MFSD14A, ACTG1P4, NBPF6, STXBP3, MIR553, VCAM1, CDC14A, RTCA, DNAJA1P5) 0.359781359704946 46 0.187932315136231 0.975100112251244 2585 0.337294575958657 3 2 1 -6.75404914843715 LTS-020 chr1 109363187 109363232 46 * AKNAD1 0.462 1 NA 0.574 1 NA NA NA NA NA LTS-020 chr1 109363233 113454571 4091339 * c(LINC01160, MIR4256, FAM212B-AS1, LAMTOR5-AS1, CEPT1, LAMTOR5, AHCYL1, CHI3L2, DDX20, ATXN7L2, C1orf194, DRAM2, PIFO, C1orf162, ADORA3, CSF1, CHIAP2, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, PGCP1, OVGP1, ATP5F1, NA NA NA NA NA NA NA NA NA LTS-020 ST7L, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, RBM15, SLC16A1, SCARNA2, TAF13, WNT2B, WDR77, EPS8L3, DENND2D, CAPZA1, GPR61, PROK1, PSRC1, STRIP1, SLC16A4, CD53) 0.454053572836206 111 0.0685694587974171 0.977871437806184 5575 0.294785089275774 3 2 1 -7.61439962341005 LTS-020 NA NA NA NA LTS-020 chr1 113454572 114269050 814479 * c(PHTF1, AKR7A2P1, MAGI3, LOC643441, SLC16A1, LRIG2) 0 1 NA 0.987024437434892 477 0.422066882231748 3 3 0 -5.76742905964457 LTS-020 chr1 114269051 115520265 1251215 * c(AP4B1-AS1, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, PTPN22, AMPD1, BCL2L15, NRAS, TRIM33, RSBN1, OLFML3, DCLRE1B, SYCP1, CSDE1, SIKE1) 0.380199687339579 13 0.202636721809353 0.958070416395458 1717 0.269375214121402 3 2 1 -6.73635025932832 LTS-020 chr1 115520266 115537933 17668 * SYCP1 0.423 1 NA 1.07800363661597 23 0.316097004423537 4 4 0 -5.76528941878645 LTS-020 chr1 115537934 117122130 1584197 * c(TSPAN2, MAB21L3, IGSF3, ATP1A1, NGF, NHLH2, SLC22A15, SYCP1, TSHB, VANGL1, CASQ2, ATP1A1-AS1, CD58) 0.468521731252849 21 0.0262162254375125 1.01855154094089 1071 0.259663633106039 4 2 2 -9.97652191004046 LTS-020 chr1 117122131 117142613 20483 * IGSF3 0.302 1 NA 0.980620756324087 31 0.116629603943977 3 3 0 -5.76505282275215 LTS-020 chr1 117142614 117150736 8123 * IGSF3 0.306383730879062 13 0.0560359316958828 1.06434596900829 35 0.509236092907138 4 3 1 -6.73330043120388 LTS-020 chr1 117150737 117150928 192 * IGSF3 0.407 1 NA 1.10147778282891 5 0.560772413729492 4 4 0 -5.76441189512537 LTS-020 chr1 117150929 118617274 1466346 * c(MIR942, MIR320B1, WDR3, MAN1A2, SPAG17, IGSF3, GDAP2, FAM46C, PTGFRN, VTCN1, TRIM45, TTF2, CD2, CD101) 0.448979463761766 26 0.0340799286745371 0.979834250313283 1455 0.420581723414069 4 2 2 -8.20785711499223 LTS-020 chr1 118617275 118642317 25043 * SPAG17 0 1 NA 0.989057251305192 45 0.366866044966681 3 3 0 -5.76454876250694 LTS-020 chr1 118642318 120163248 1520931 * c(WARS2, HSD3BP4, SPAG17, HSD3B1, HSD3B2, HAO2, LINC00622, TBX15, ZNF697) 0.297237280676544 9 0.208567002290498 0.992639779120802 371 0.421890983561673 3 2 1 -6.80416316029299 LTS-020 chr1 120163249 120163531 283 * ZNF697 0.488 1 NA 1.11678312854814 7 0.361199259082718 4 4 0 -5.7644141588871 LTS-020 chr1 120163532 120344936 181405 * c(PHGDH, HMGCS2, REG4, ZNF697) 0.451357552147716 28 0.0524724543509113 0.995901234114827 305 0.310476890520089 4 2 2 -7.43521944680615 LTS-020 chr1 120344937 120456111 111175 * c(ADAM30, NBPF7, NOTCH2, REG4) 0 1 NA 0.93063718891078 155 0.379220648890084 3 3 0 -5.76471513419552 LTS-020 chr1 120456112 121116733 660622 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.3551860381322 13 0.0902649944927115 1.01869963211422 440 0.892805159208305 3 2 1 -6.74278238133252 LTS-020 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.956319804873906 59 0.186499730884806 3 NA NA -5.76441860466376 LTS-020 chr1 143912360 144676632 764273 * c(NBPF20, LOC653513, FAM72D, NA, PFN1P2, PDE4DIP) 0.436 1 NA 0.93001163806326 21 0.396349088557045 3 3 0 -5.76643096524756 LTS-020 chr1 144676633 144851627 174995 * c(NBPF20, LOC653513, PDE4DIP) 0.383 1 NA 0.687882708652965 22 0.350214170712673 2 2 0 -5.76727541831849 LTS-020 chr1 144851628 144851674 47 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.126 1 NA NA NA NA NA LTS-020 chr1 144851675 145103859 252185 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.333581477232584 58 0.0778865435881662 1.13610929153555 514 0.494032105567034 4 3 1 -6.80312990889633 LTS-020 chr1 145103860 145103928 69 * c(NBPF20, SEC22B) 0.204 1 NA 2.629 1 NA NA NA NA NA LTS-020 chr1 145103929 145442032 338104 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL, SEC22B) 0.305715656032975 23 0.125392285633697 1.35352019101231 338 0.746444551277332 4 3 1 -6.73987213177864 LTS-020 chr1 145442033 145501347 59315 * c(NBPF10, NBPF20, TXNIP, LIX1L, ANKRD34A, POLR3GL) 0 1 NA 1.38043223910861 183 0.381441164895803 5 5 0 -5.76449707975961 LTS-020 chr1 145501348 145827086 325739 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115, PDZK1, GPR89A, ITGA10, PEX11B, RBM8A) 0.349453839798088 5 0.0195780489324141 1.31463174448064 894 0.292701351882236 6 4 2 -6.84508778495893 LTS-020 chr1 145827087 146310605 483519 * c(NBPF10, NBPF20, GPR89A, NA, NA, NA) NA 0 NA 2.573 1 NA NA NA NA NA LTS-020 chr1 146310606 146767504 456899 * c(NBPF10, NBPF20, NBPF12, PDIA3P1, FMO5, PRKAB2, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.226236023904971 16 0.0796333001953329 2.17568236601187 466 0.996488838903551 10 8 2 -6.74531430363231 LTS-020 chr1 146767505 147083291 315787 * c(LINC00624, BCL9, NA, NA, NA) NA 0 NA 1.167 1 NA NA NA NA NA LTS-020 chr1 147083292 149676551 2593260 * c(FCGR1CP, MIR5087, NBPF14, GJA5, GJA8, NBPF15, LINC01138, LOC388692, ACP6, GPR89B, LINC00869, BCL9, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.3653060962573 11 0.0452102160618995 1.35588210954754 423 0.405977994472069 5 3 2 -6.85098845315737 LTS-020 chr1 149676552 152760544 3083993 * c(C1orf68, LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, BNIPL, CTSK, CTSS, ECM1, LCE4A, ENSA, FCGR1A, FLG, POGZ, RPRD2, CA14, LCE5A, LCE2B, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, NA NA NA NA NA NA NA NA NA LTS-020 KPRP, CRNN, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, LCE3D, SELENBP1, PRPF3, SETDB1, SV2A) 0.231532165404225 111 0.0769397383770139 2.09160529965915 6246 0.736315834412993 9 7 2 -6.82888787766146 LTS-020 NA NA NA NA LTS-020 chr1 152760545 152777473 16929 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 3.81195845720653 43 1.7813350254425 16 NA NA -5.76441152120439 LTS-020 chr1 152777474 152777490 17 * LCE1C NA 0 NA 2.288 1 NA NA NA NA NA LTS-020 chr1 152777491 153122613 345123 * c(SPRR4, LCE1A, LCE1B, LCE1C, IVL, SMCP, LCE6A, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.273979765305521 17 0.0836457867860589 2.13429661038135 254 1.30402908849318 8 6 2 -6.74037982752378 LTS-020 chr1 153122614 153177103 54490 * c(LELP1, SPRR2G) NA 0 NA 1.292 1 NA NA NA NA NA LTS-020 chr1 153177104 153318665 141562 * c(PGLYRP3, LELP1, LOR, PGLYRP4, PRR9) 0.181784965007349 3 0.198525397199787 1.37757077677646 167 0.469050751706267 7 6 1 -6.77127982763212 LTS-020 chr1 153318666 153410822 92157 * c(S100A7A, PGLYRP4, S100A8, S100A9, S100A12, S100A7L2) 0.361 1 NA 1.45421077910707 151 0.340885553030487 5 5 0 -5.76493498106499 LTS-020 chr1 153410823 171604877 18194055 * c(MIR190B, MIR921, MSTO2P, TSTD1, CADM3-AS1, MIR1295A, MIR3119-1, MIR3119-2, MIR4258, MIR3658, LINC01133, LOC100505666, LOC100505795, LOC100505918, PMF1-BGLAP, MIR4654, SCAMP3, MIR1295B, MIR5187, GPA33, ADAR, HAX1, C1orf61, SLC19A2, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, DUSP12, GLMP, CHRNB2, SLAMF6, FCRL1, FCRL3, FMO9P, CKS1B, TADA1, SH2D1B, CLK2, TDRD10, SHE, KLHDC9, OR10J5, DCST2, UHMK1, FCRLB, TSACC, NA NA NA NA NA NA NA NA NA LTS-020 IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, S100A16, ITLN2, CREB3L4, DCST1, METTL11B, FAM78B, LRRC71, PYHIN1, TTC24, DPT, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, F5, FCER1A, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, FDPS, ALDH9A1, KIAA0907, KIFAP3, ATF6, SYT11, PRRC2C, FMO1, FMO2, FMO3, FMO4, SMG5, NCSTN, GPR161, SNAPIN, RUSC1, ACKR1, ARHGAP30, CFAP126, CFAP45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MPC2, OLFML2B, C1orf43, CHTOP, TIPRL, GBA, GBAP1, OR10J1, USP21, SLC39A1, RUSC1-AS1, C1orf204, C1orf111, LINC01142, LAMTOR2, NME7, HDGF, APCS, HSPA6, HSPA7, APOA2, RXFP4, CCDC190, IFI16, OR10R2, FCRL6, IL6R, CYCSP52, ILF2, INSRR, PEAR1, SFT2D2, KCNJ9, KCNJ10, KCNN3, ILDR2, C1orf189, FMO6P, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, C1orf226, LOC400794, LMX1A, LY9, MIR9-1, MEF2D, MGST3, MNDA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MPZ, ETV3L, LRRC52, LOC440700, OR10J3, MTX1, MUC1, MYOC, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, ATP1B1, NIT1, NPR1, NTRK1, DDR2, DCAF8, F11R, PBX1, ZBTB7B, RRNAD1, HSD17B7, UFC1, CD244, PFDN2, PKLR, PRRX1, DPM3, TMCO1, POU2F1, GON4L, GPATCH4, DUSP23, PPOX, MSTO1, KIRREL, YY1AP1, PRCC, UBE2Q1, ITLN1, C1orf112, ADCY10, DCAF6, ASH1L, LENEP, SLC50A1, SLAMF8, UBQLN4, RAB25, RHBG, SCYL3, ATP8B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 VANGL2, PBXIP1, S100A14, GATAD2B, IGSF9, POGK, HCN3, CCDC181, SLAMF7, CADM3, PEX19, RAB13, RGS4, RIT1, HAPLN2, RPS27, RXRG, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A13, BGLAP, XCL1, BCAN, SDHC, SELE, SELL, SELP, RPL31P11, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, SLAMF1, INTS3, PCP4L1, UAP1, SPTA1, SSR2, SCARNA4, SNORA80E, XCL2, MIR555, MIR556, MIR557, MIR92B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 THBS3, TOP1P1, TPM3, CCT3, UCK2, USF1, MIR765, DAP3, LINC00626, FCRL2, MRPL24, PAQR6, TRIM46, MROH9, FLAD1, OR6N2, OR6K2, NECTIN4, ISG20L2, FCRL5, FCRL4, NUF2, TAGLN2, TOMM40L, TMEM79, CASQ1, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, PEA15, B4GALT3, ADAM15, CREG1, CD84, AQP10, SLAMF9, MPZL1, SH2D2A, PYGO2, CD1A, TBX19, CD1B, FCGR2C, CD1C, NUP210L, CD1D, CD1E, ARHGEF2, CD247, DEDD, CD5L, DUSP27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RCSD1, MEX3A, METTL18, GORAB, PIGM, IGSF8, AIM2, ADAMTS4, CD48, SLC25A44, NOS1AP, ARHGEF11, UBAP2L, DENND4B, NR1I3) 0.327325024045168 479 0.109782782390524 1.34658009042152 23193 0.389310029554259 5 3 2 -7.02537410069975 LTS-020 NA NA NA NA LTS-020 chr1 171604878 176176118 4571241 * c(MIR3120, LOC100506023, GAS5-AS1, DNM3OS, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, MYOC, SUCO, METTL13, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, VAMP4, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.325175040439996 54 0.125186877777086 1.2947713505738 2831 0.48065175478809 4 3 1 -6.84488982462854 LTS-020 chr1 176176119 176176228 110 * RFWD2 NA 0 NA 2.342 1 NA NA NA NA NA LTS-020 chr1 176176229 178822117 2645889 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.285704929772379 15 0.15275136972342 1.4622202209536 1202 0.441702532606964 5 4 1 -6.76226665491658 LTS-020 chr1 178822118 178822734 617 * c(RALGPS2, ANGPTL1) NA 0 NA 1.249 1 NA NA NA NA NA LTS-020 chr1 178822735 179888152 1065418 * c(AXDND1, FAM163A, TDRD5, TOR1AIP2, TOR1AIP1, ABL2, RALGPS2, TOR3A, SOAT1, NPHS2, ANGPTL1, FAM20B) 0.338897310959021 49 0.0992366956760829 1.32990421142946 1425 0.464575558917837 4 3 1 -6.83607510124625 LTS-020 chr1 179888153 179888328 176 * TOR1AIP1 NA 0 NA 0.749 1 NA NA NA NA NA LTS-020 chr1 179888329 180083888 195560 * c(TOR1AIP1, CEP350) 0.285256067995211 2 0.33375440072005 0.974084816620008 338 0.404728581307574 4 3 1 -6.76197437051899 LTS-020 chr1 180083889 180144485 60597 * c(QSOX1, CEP350) 0.447 1 NA 0.869933840519666 19 0.248120561150214 3 3 0 -5.76952411372052 LTS-020 chr1 180144486 180246451 101966 * c(LHX4-AS1, FLJ23867, QSOX1, LHX4) 0.466374824644534 12 0.0328605870583315 1.01960763635766 310 0.282449696267863 4 2 2 -8.83770420334599 LTS-020 chr1 180246452 180257677 11226 * ACBD6 NA 0 NA 0.973124767183325 65 0.194192307787528 3 NA NA -5.76447460342559 LTS-020 chr1 180257678 180283709 26032 * ACBD6 NA 0 NA 0.419 1 NA NA NA NA NA LTS-020 chr1 180283710 180601190 317481 * c(MIR3121, ACBD6, XPR1) 0.121 1 NA 0.639269815995572 49 0.209653682692832 2 2 0 -5.83805094016865 LTS-020 chr1 180601191 181777198 1176008 * c(GM140, STX6, MR1, IER5, KIAA1614, CACNA1E, XPR1) 0.199559013695133 30 0.0783313401556153 0.649876348964739 1248 0.217536765064117 2 2 0 -6.92930672157805 LTS-020 chr1 181777199 182023732 246534 * ZNF648 NA 0 NA 1.051 1 NA NA NA NA NA LTS-020 chr1 182023733 182544270 520538 * c(ZNF648, TEDDM1, GLUL, RGSL1, LINC00272, RNASEL) 0.335534254554567 6 0.243950336475822 1.01921578925105 370 0.331702731117938 3 2 1 -6.75407774700651 LTS-020 chr1 182544271 182635936 91666 * c(LOC284648, RGS16, RNASEL, RGS8) 0.482 1 NA 1.03667951181214 169 0.243449799351263 3 3 0 -5.7706836982802 LTS-020 chr1 182635937 186289480 3653544 * c(GS1-279B7.1, MIR548F1, RNU6-72P, ARPC5, PRG4, IVNS1ABP, TSEN15, FAM129A, DHX9, NMNAT2, COLGALT2, RGL1, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, SWT1, RNF2, TPR, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, RGS8, SMG7) 0.44888505513632 85 0.0774703286473492 1.00038064003442 3361 0.254361112456061 3 2 1 -7.4323895102334 LTS-020 chr1 186289481 186303546 14066 * c(MIR548F1, TPR) 0 1 NA 0.92084106603646 49 0.482109678752604 3 3 0 -5.7644577802723 LTS-020 chr1 186303547 186957917 654371 * c(MIR548F1, OCLM, PDC, PLA2G4A, C1orf27, PTGS2, TPR) 0 1 NA 1.00291632237218 516 0.247282371521195 3 3 0 -5.77988382323794 LTS-020 chr1 187610629 200146170 12535542 * c(MIR181A1HG, MIR1278, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, UCHL5, LHX9, PTPRC, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, CFHR5, B3GALT2) 0.179664382908919 53 0.111494160162597 0.621166854330476 2905 0.229408711144187 2 2 0 -9.12939513905916 LTS-020 chr1 200146171 200182664 36494 * NR5A2 0.24 1 NA 0.585292325342066 10 0.13856647021075 1 1 0 -5.79053549761448 LTS-020 chr1 200182665 201173096 990432 * c(KIF21B, CAMSAP2, ZNF281, TMEM9, GPR25, LINC00862, C1orf106, ASCL5, CACNA1S, DDX59, IGFN1, KIF14) 0.20651409994044 17 0.0708185336326752 0.650349972218911 1265 0.178130481408895 2 2 0 -6.99358158086902 LTS-020 chr1 201173097 201174166 1070 * IGFN1 NA 0 NA 1.273 1 NA NA NA NA NA LTS-020 chr1 201174167 201178498 4332 * IGFN1 0.115577098043292 3 0.013228756555323 1.06884086385514 75 0.301521527774903 4 4 0 -6.76815809739832 LTS-020 chr1 201178499 223410186 22231688 * c(MIR1231, ZBED6, MIR4260, MIR3122, PCAT6, MIR5191, LINC00538, LINC00210, BPNT1, TIMM17A, LRRN2, CENPF, KDM5B, IL24, CHI3L1, CHIT1, DUSP10, SLC26A9, LYPLAL1, ARL8A, SYT2, LINC00628, GOLT1A, SPATA17, TATDN3, ADORA1, CR1, CR1L, CR2, CSRP1, C1orf74, BROX, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELF3, ELK4, EPRS, ESRRG, PLEKHA6, NFASC, FMOD, SRGAP2, PHLDA3, NA NA NA NA NA NA NA NA NA LTS-020 SLC41A1, SYT14, DSTYK, RAB3GAP2, LMOD1, INTS7, NSL1, OPTC, RPS6KC1, RNU5F-1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, UBE2T, NENF, IL19, HLX, HSD11B1, RD3, IL10, IRF6, MIA3, KCNH1, RPS10P7, KCNK2, KISS1, TMEM81, LAD1, LAMB3, C1orf140, FAM177B, NA, MIR194-1, MIR205, MIR215, MIR29C, MARK1, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, RRP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ADIPOR1, KCTD3, CDK18, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, LAX1, MARC2, SUSD4, GPATCH2, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, SLC30A10, IARS2, IPO9, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN7, PTPN14, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, MIR205HG, FLVCR1-AS1, LYPLAL1-AS1, NUCKS1, MARC1, AIDA, SRGAP2C, SNRPE, SNORA36B, SNORA77, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 AURKAPS1, CNTN2, SNORA16B, TGFB2, TLR5, TNNI1, TNNT2, TRAF5, C4BPA, C4BPB, TGFB2-AS1, FAM72A, LINC01136, USH2A, SLC30A1, BTG2, C1orf116, C1orf115, HHIPL2, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, DISP1, SLC45A3, RAB29, NAV1, TAF1A, ANGEL2, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, LPGAT1) 0.210707931431396 351 0.0796034438852257 0.659357465678181 17667 0.196937583951078 2 2 0 -9.0659950445078 LTS-020 NA NA NA NA LTS-020 chr1 223410187 233519224 10109038 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4742, MIR5008, LEFTY1, SPHAR, CAPN9, SNAP47, CCSAP, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, COG2, FBXO28, ABCB10, GALNT2, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, FAM89A, CAPN8, LBR, ZNF847P, TRIM67, H3F3AP4, NVL, NA NA NA NA NA NA NA NA NA LTS-020 TRIM17, EGLN1, MAP10, SUSD4, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, JMJD4, SRP9, LEFTY2, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DEGS1, WNT3A, HIST3H2A, TMEM63A, URB2) 0.213425726801761 217 0.0719258957914816 0.641658490001257 9221 0.19078258838713 2 2 0 -8.71666771545399 LTS-020 NA NA NA NA LTS-020 chr1 233519225 236912624 3393400 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.224060959441073 43 0.0940732261142314 0.6092210918679 2375 0.181598214239752 2 2 0 -8.32721662054014 LTS-020 chr1 236912625 236914699 2075 * ACTN2 NA 0 NA 0.994 1 NA NA NA NA NA LTS-020 chr1 236914700 237811766 897067 * c(MTR, RYR2, MT1HL1, ACTN2) 0.228570249089968 14 0.0308940052508502 0.661910736975795 684 0.180265332691052 2 2 0 -7.63992493416825 LTS-020 chr1 237811767 237923053 111287 * RYR2 0.174 1 NA 0.694364776574383 169 0.207662237512507 2 2 0 -5.76804834242645 LTS-020 chr1 237923054 238053917 130864 * c(LOC100130331, ZP4, RYR2) 0 2 0 0.68351886638872 229 0.329662205435793 0 0 0 -Inf LTS-020 chr1 238053918 238053994 77 * c(LOC100130331, ZP4) NA 0 NA 1.026 1 NA NA NA NA NA LTS-020 chr1 238053995 249143646 11089652 * c(AKT3, LOC100130331, MIR3123, MIR3124, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, NA NA NA NA NA NA NA NA NA LTS-020 OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, TFB2M, GREM2, RPS7P5, LYPD8, SMYD3, LINC01347, ZNF124, ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, EXO1, ZNF670, CEP170) 0.1228694653037 111 0.0642149734669634 1.06736489877585 5178 0.590017985582338 4 4 0 -6.92423931226564 LTS-020 NA NA NA NA LTS-020 chr1 249143647 249214134 70488 * c(PGBD2, ZNF692, ZNF672) NA 0 NA 0.974752736122347 155 0.194544801435032 3 NA NA -5.76488756194886 LTS-020 chr2 38824 41120 2297 * FAM110C 0 1 NA 0.964119845919531 45 0.301919738147125 3 3 0 -5.76441155739673 LTS-020 chr2 41121 26532731 26491611 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, NA NA NA NA NA NA NA NA NA LTS-020 TRIB2, GRHL1, HADHA, HADHB, HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, ACP1, SNTG2, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, FAM110C, HS1BP3, LOC645949, FAM228A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, DNAJC27-AS1, MYT1L-AS1, VSNL1, PXDN, COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.395063871133988 264 0.124866902985652 0.98688599741658 11264 0.29286926616354 3 2 1 -6.96249826677405 LTS-020 NA NA NA NA LTS-020 chr2 26532732 26532830 99 * ADGRF3 NA 0 NA 1.003 1 NA NA NA NA NA LTS-020 chr2 26532831 27547881 1015051 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.406717017606792 64 0.111479832149992 1.06071014006069 2448 0.295512930470445 4 2 2 -6.82164444020068 LTS-020 chr2 27547882 37317871 9769990 * c(LOC100271832, LOC100288911, BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, MIR4765, GPN1, ZNF513, PLB1, MYADML, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, GPATCH11, RASGRP3, FAM98A, IFT172, GCKR, SNORD53, LINC00486, GTF3C2, NRBP1, EHD3, C2orf71, LTBP1, MPV17, CAPN14, MEMO1, CRIM1, YPEL5, VIT, HEATR5B, PPM1G, PPP1CB, TRMT61B, TTC27, SLC30A6, BIRC6, NLRC4, RBKS, FNDC4, SPAST, NA NA NA NA NA NA NA NA NA LTS-020 SRD5A2, STRN, SNORD92, MIR558, XDH, GALNT14, CCDC121, CLIP4, LBH, C2orf16, YIPF4, ZNF512, DPY30, EIF2B4, CAPN13, MRPL33, BRE, FEZ2, SNX17, SUPT7L) 0.408139717363778 98 0.115664384956657 0.995580362788787 6688 0.280296615038967 3 2 1 -6.9415589108787 LTS-020 NA NA NA NA LTS-020 chr2 37317872 37318950 1079 * GPATCH11 NA 0 NA 0.76 1 NA NA NA NA NA LTS-020 chr2 37318951 40339814 3020864 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.389810844811207 32 0.133577994614238 0.935177846175647 2421 0.237624007180663 3 2 1 -6.76683049773766 LTS-020 chr2 40339815 69409029 29069215 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3126, MIR3682, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, C1D, CCT4, B3GNT2, SIX2, PROKR1, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, LINC00309, OXER1, KCNG3, GKN2, APLF, TMEM17, SPRED2, EPAS1, EFEMP1, CEP68, PSME4, EHBP1, RHOQ, HAAO, FSHR, CNRIP1, NA NA NA NA NA NA NA NA NA LTS-020 ERLEC1, BMP10, EML4, C2orf61, STON1-GTF2A1L, LGALSL, MSH6, FOXN2, LOC339803, C2orf74, LOC339807, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, EPCAM, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, DYNC2LI1, PEX13, PIGF, BCL11A, PLEK, ETAA1, AFTPH, PPM1B, FANCL, SRBD1, PPP3R1, FBXO48, CCDC88A, PRKCE, GKN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 KCNK12, PNO1, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, RAB1A, REL, RPS27A, THADA, ABCG5, ABCG8, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, MEIS1-AS3, UGP2, VRK2, XPO1, CAMKMT, FBXO11, CALM2, FAM161A, ANTXR1, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.385922385348028 228 0.143367553614206 0.987599769137268 12175 0.339802193070297 3 2 1 -6.91275108302186 LTS-020 NA NA NA NA LTS-020 chr2 69409030 69633045 224016 * c(GFPT1, NFU1, ANTXR1) 0 1 NA 0.952521785009449 235 0.244162663367974 3 3 0 -5.76442312014204 LTS-020 chr2 69633046 73268736 3635691 * c(SNORA36C, LOC100133985, MPHOSPH10, SNRNP27, TEX261, ADD2, ASPRV1, CLEC4F, EMX1, AAK1, EXOC6B, VAX2, NFU1, ZNF638, ANXA4, FIGLA, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, CYP26B1, GMCL1, SNRPG, SPR, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, MCEE, FAM136A, SFXN5) 0.329541147414498 62 0.195557590711878 1.00155127940561 3331 0.318648042562082 3 2 1 -6.80180740406908 LTS-020 chr2 73268737 73300560 31824 * c(RAB11FIP5, SFXN5) 0.484 1 NA 0.898899011107257 19 0.214699844880738 3 3 0 -5.76591799786396 LTS-020 chr2 73300561 75719791 2419231 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SMYD5, SEMA4F, CCT7, STAMBP, MTHFD2, MRPL53, M1AP, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, RAB11FIP5, HTRA2, HK2, TLX2, NOTO, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, ACTG2, ALMS1, MOGS, INO80B, WDR54, EVA1A, PRADC1, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.378038864142364 29 0.137426836782269 0.985644263963326 3661 0.262680849364631 3 2 1 -6.75927785329301 LTS-020 chr2 75719792 80875819 5156028 * c(SNAR-H, MIR4264, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, GCFC2, LRRTM4, EVA1A, MRPL19) 0.343624289827149 10 0.181592217160685 1.12286254567347 683 0.351695227188216 4 3 1 -6.81992304959556 LTS-020 chr2 80875820 87085504 6209685 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.4133893527427 69 0.116537039178221 0.937529874242186 3146 0.258430288032293 3 2 1 -6.85165419794443 LTS-020 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.606 1 NA NA NA NA NA LTS-020 chr2 87092741 87407206 314466 * c(ANAPC1P1, LOC285074, RMND5A) 0.429 1 NA 0.630498121279717 76 0.307302470574274 2 2 0 -5.80611235055809 LTS-020 chr2 87407207 87408164 958 * RMND5A NA 0 NA 0.285 1 NA NA NA NA NA LTS-020 chr2 87408165 87424285 16121 * RMND5A NA 0 NA 0.345692697233572 48 0.316231314448125 0 NA NA -5.76915793476933 LTS-020 chr2 87424286 87426774 2489 * RMND5A 0.418864591859504 2 0.0424264068711929 0.652454131718941 47 0.231686582532177 2 1 1 -6.95360171913587 LTS-020 chr2 87929222 89597177 1667956 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.389293646998875 21 0.112818501522198 0.978744670808762 738 0.407430463538326 3 2 1 -6.76352335025348 LTS-020 chr2 89597178 89890617 293440 * character(0) NA 0 NA 1.415 1 NA NA NA NA NA LTS-020 chr2 89890618 90260011 369394 * character(0) 0.258515151515152 2 0.00919238815542513 1.65481005566436 126 1.45080354599765 5 4 1 -6.74943920887258 LTS-020 chr2 90260012 91955404 1695393 * LOC654342 0.364508356171521 23 0.0806092904540778 1.21198463395972 96 0.57623683215537 4 2 2 -6.80752713106789 LTS-020 chr2 91955405 91955470 66 * character(0) NA 0 NA 1.38690902625114 3 0.17031832941094 5 NA NA -5.76441040471178 LTS-020 chr2 95537183 95537544 362 * c(TEKT4, LOC442028) 0.032 1 NA 1.07942665292959 7 0.11535947955764 4 4 0 -5.76454116888788 LTS-020 chr2 95537545 96050582 513038 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.245310850279039 9 0.21126109438323 0.981249621027949 499 0.254705453149795 3 3 0 -6.8648091037556 LTS-020 chr2 96050583 96080548 29966 * c(KCNIP3, FAHD2A) 0.467 1 NA 1.0268460608372 97 0.187677584860597 3 3 0 -5.76710927391132 LTS-020 chr2 96080549 118771566 22691018 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, TRIM43, TMEM182, COX5B, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, DUSP2, NA NA NA NA NA NA NA NA NA LTS-020 FOXD4L1, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, PSD4, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, ASTL, LINC01191, SULT1C3, NPAS2, NPHP1, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MIR4435-2HG, CCDC93, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, IL36G, STARD7, DPP10, ANKRD36B, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, TRIM43B, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, PAX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, SLC35F5, TSGA10, LMAN2L, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, DDX18, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.404553139955582 298 0.121933505557915 0.93972793078844 12879 0.575654548111803 3 2 1 -6.80467358293312 LTS-020 NA NA NA NA LTS-020 chr2 118771567 118867637 96071 * c(INSIG2, CCDC93) NA 0 NA 0.967910085020974 61 0.181485617910061 3 NA NA -5.76473506295245 LTS-020 chr2 119591363 119726838 135476 * c(EN1, MARCO) 0 1 NA 0.586199005829846 67 0.24993105426502 1 1 0 -5.79481172811965 LTS-020 chr2 119726839 122525368 2798530 * c(RNU4ATAC, C2orf76, TMEM37, DBI, C1QL2, CFAP221, CLASP1, NIFK-AS1, GLI2, TFCP2L1, INHBB, STEAP3, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, TMEM177, NIFK, LINC01101, MARCO) 0.213927575107371 45 0.0925928417505065 0.583692433713629 2105 0.263284226849308 1 1 0 -7.48307569156641 LTS-020 chr2 122525369 128046933 5521565 * c(CNTNAP5, ERCC3, BIN1, GYPC, CYP27C1, TSN) 0.282262727684462 12 0.207437814705268 0.793808740605758 482 0.294448710823047 2 2 0 -7.11182949518156 LTS-020 chr2 128046934 128060068 13135 * c(MAP3K2, ERCC3) 0.492 1 NA 0.848292641875945 111 0.293336670277349 3 3 0 -5.76569128003941 LTS-020 chr2 128060069 128620120 560052 * c(MIR4783, MAP3K2, GPR17, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, AMMECR1L, SFT2D3) 0.434257129157743 34 0.0480050595224133 0.766698538940767 1177 0.185876651409588 2 1 1 -7.1771582460468 LTS-020 chr2 128620121 128621421 1301 * AMMECR1L 0 1 NA 0.935283751738177 31 0.754836571359898 3 3 0 -5.76441071913506 LTS-020 chr2 128621422 128953059 331638 * c(UGGT1, SAP130, AMMECR1L) 0.236901555709512 10 0.216416291233149 0.770059708206441 518 0.301228554674699 2 2 0 -6.76587103004128 LTS-020 chr2 128953060 129023282 70223 * c(UGGT1, HS6ST1) 0.444 1 NA 0.75412441272234 11 0.344375983747151 2 2 0 -5.76482253037208 LTS-020 chr2 129023283 132200779 3177497 * c(RAB6C-AS1, CYP4F30P, FAR2P2, TUBA3E, FAM168B, WTH3DI, AMER3, PTPN18, MED15P9, GPR148, LOC389033, LINC01120, NOC2LP2, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, POTEF, MZT2B, RAB6C, CCDC115, CCDC74B, IMP4, HS6ST1) 0.394350503532157 27 0.12680704097575 0.812150895361099 1298 0.343685068648472 2 1 1 -6.91638247138762 LTS-020 chr2 132200780 132289529 88750 * c(MIR4784, TUBA3D, LOC150776, NOC2LP2, MZT2A, CCDC74A) 0.408604483854569 3 0.0724591839129681 0.610708501014907 286 0.257352133345262 2 1 1 -6.78691032731052 LTS-020 chr2 132289530 162087797 29798268 * c(TANK, CCNT2-AS1, LOC100144595, ZEB2-AS1, MIR663B, MIR3679, LOC100507600, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, STAM2, GALNT5, NXPH2, FMNL2, GALNT13, LYPD1, ACMSD, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DARS, PLA2R1, RAB3GAP1, UBXN4, R3HDM1, EPC2, ARL5A, MMADHC, GPD2, GPR39, C2orf27A, BAZ2B, HNMT, SPOPL, NCKAP5, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LCT, TEX41, LY75, MIR128-1, C2orf27B, NA NA NA NA NA NA NA NA NA LTS-020 MCM6, MGAT5, NEB, NR4A2, ORC4, LRP1B, RIF1, CCDC148-AS1, ANKRD30BL, PRPF40A, MBD5, ARHGAP15, RPRM, ERMN, RBMS1, YY1P2, MARCH7, TNFAIP6, PABPC1P2, CACNB4, CXCR4, GTDC1, MAP3K19, THSD7B, TMEM163, ZRANB3, PKP4, TANC1, KYNU, ACVR1, CCNT2, CCDC74A, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.374620296117551 177 0.135598495957012 0.783817458584465 9606 0.230521663237775 2 1 1 -8.13973402743795 LTS-020 NA NA NA NA LTS-020 chr2 162087798 168116187 6028390 * c(TANK, SNORA70F, LOC100506124, TTC21B-AS1, PSMD14, TBR1, XIRP2, SLC38A11, DPP4, FAP, COBLL1, GCA, GALNT3, GCG, AHCTF1P1, GRB14, FIGN, SLC4A10, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, IFIH1, TTC21B, CSRNP3, KCNH7) 0.359429614990135 72 0.167536182530712 0.967116204680892 3574 0.455692171117733 3 2 1 -6.73664574348425 LTS-020 chr2 168116188 168116189 2 * XIRP2 0.316 1 NA 2.201 1 NA NA NA NA NA LTS-020 chr2 168116190 169630514 1514325 * c(MIR4774, CERS6-AS1, XIRP2, CERS6, STK39, B3GALT1) 0.167612769692033 9 0.207457893987618 0.968138976899751 333 0.451664253276756 3 3 0 -6.740041444497 LTS-020 chr2 169630515 169658834 28320 * c(CERS6-AS1, NOSTRIN, CERS6) 0.49 1 NA 1.0477773341125 25 0.261142094142889 3 3 0 -5.76656032684638 LTS-020 chr2 169658835 170366420 707586 * c(DHRS9, KLHL41, NOSTRIN, BBS5, LRP2, SPC25, G6PC2, ABCB11) 0.434568570416825 24 0.100366682791117 0.954047208877389 929 0.283873544341977 3 2 1 -7.00528992226932 LTS-020 chr2 170366421 183948321 13581901 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, NA NA NA NA NA NA NA NA NA LTS-020 HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.414404428158237 156 0.131687574692416 0.923849942708229 11229 0.237842492464586 3 2 1 -6.96757987546371 LTS-020 NA NA NA NA LTS-020 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.035 1 NA NA NA NA NA LTS-020 chr2 183951766 183964169 12404 * DUSP19 0.454667191475742 4 0.0182460041287584 1.06609094471301 78 0.484973500345427 4 2 2 -10.3225835662354 LTS-020 chr2 183964170 183995338 31169 * c(NUP35, DUSP19) 0 1 NA 0.980754988821187 19 0.503902791609466 3 3 0 -5.76446307045201 LTS-020 chr2 183995339 186668691 2673353 * c(NUP35, FSIP2, ZNF804A) 0.280485733576091 12 0.236579203855643 1.01964052100957 554 0.48149816305539 3 2 1 -6.83905049766567 LTS-020 chr2 186668692 186672527 3836 * FSIP2 0.489 1 NA 1.00799412144166 81 0.163594568112909 3 3 0 -5.7646627355806 LTS-020 chr2 186672528 189922097 3249570 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI) 0.402115710735892 24 0.131681763948247 0.994858085000267 1446 0.431424756846004 3 2 1 -6.79695666194546 LTS-020 chr2 189922098 196601963 6679866 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.418892466267142 35 0.114159059019872 0.920864659941949 2592 0.269127913193196 3 2 1 -6.93362559380875 LTS-020 chr2 196601964 198949169 2347206 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.403443383177586 30 0.163891992048029 0.856040559769794 2180 0.235888019722683 3 2 1 -7.05274432747892 LTS-020 chr2 198949170 201304064 2354895 * c(TYW5, SATB2-AS1, C2orf69, SATB2, SPATS2L, FTCDNL1, PLCL1, C2orf47) 0.26737979822114 4 0.232345289027631 0.989199605062491 555 0.237145519593281 3 2 1 -6.86924284390695 LTS-020 chr2 201304065 201305390 1326 * SPATS2L NA 0 NA 0.78 1 NA NA NA NA NA LTS-020 chr2 201305391 203826688 2521298 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.399951506253871 37 0.131182683294696 0.898405971785984 3348 0.250014460487595 3 2 1 -6.86279147876107 LTS-020 chr2 203826689 203880834 54146 * c(NBEAL1, CARF) 0.461567202626234 4 0.0322283519073915 0.997741534288273 122 0.364699368781311 4 2 2 -8.68708814826942 LTS-020 chr2 203880835 203972139 91305 * NBEAL1 0 1 NA 0.975313212110973 53 0.384557919146804 3 3 0 -5.76457734017432 LTS-020 chr2 203972140 204738248 766109 * c(ABI2, CTLA4, CYP20A1, RAPH1, NBEAL1, CD28) 0.201208691715057 11 0.226762190210562 0.934050886275904 843 0.335295607079343 3 3 0 -6.76961548855013 LTS-020 chr2 204738249 205829991 1091743 * c(PARD3B, CTLA4, ICOS) 0.468 1 NA 0.911585732574318 95 0.237866887596836 3 3 0 -5.78915492826011 LTS-020 chr2 205829992 208591523 2761532 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, PARD3B, CPO, MDH1B, CREB1, METTL21A, CCNYL1, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, DYTN, NDUFS1, INO80D, ZDBF2, SNORA41, KLF7, ADAM23, NRP2) 0.393743946661583 40 0.154606612042239 0.954593303282065 2204 0.272661882877794 3 2 1 -6.75313424940468 LTS-020 chr2 208591524 208618798 27275 * CCNYL1 0 1 NA 0.894490850320193 43 0.77015448321601 3 3 0 -5.76452762609459 LTS-020 chr2 208618799 209220784 601986 * c(LOC100507443, IDH1-AS1, MIR4775, CRYGA, CRYGB, CRYGC, CRYGD, CCNYL1, PIKFYVE, IDH1, PLEKHM3, C2orf80, FZD5) 0.218058777754291 13 0.220406762658592 0.962643132670211 730 0.313461015232723 3 3 0 -6.79570988351215 LTS-020 chr2 209220785 209315573 94789 * c(PIKFYVE, PTH2R) 0.447 1 NA 0.956928685880573 86 0.148587376588767 3 3 0 -5.76442278413692 LTS-020 chr2 209315574 215632192 6316619 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, LANCL1, CPS1, KANSL1L, ERBB4, IKZF2, UNC80, CPS1-IT1, ACADL, VWC2L, MAP2, MYL1, PTH2R, BARD1, RPE, SPAG16) 0.362868709883819 34 0.162232244784358 0.996032554228985 2189 0.338302385359991 3 2 1 -6.79175982720267 LTS-020 chr2 215632193 215634055 1863 * BARD1 0.406 1 NA 1.19221597248497 11 1.33539524281969 4 4 0 -5.76441019307748 LTS-020 chr2 215634056 228135631 12501576 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, MIR4439, MIR5702, ARPC2, SPEG, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, PKI55, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EPHA4, ACSL3, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, RESP18, MIR153-1, NA NA NA NA NA NA NA NA NA LTS-020 MIR26B, ATIC, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, ANKZF1, ASIC4, DOCK10, MREG, PECR, MARCH4, WDFY1, NYAP2, USP37, PTPRN, BARD1, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, LOC646736, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, FAM124B, TUBA4B, WNT10A, RHBDD1, CUL3, PLCD4, STK16, CDK5R2, CNOT9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TMEM169, TTLL4) 0.433763345949839 197 0.0930653016314959 0.948655440236356 9511 0.247250774569295 3 2 1 -7.04564021192069 LTS-020 NA NA NA NA LTS-020 chr2 228135632 228144692 9061 * c(COL4A3, LOC654841) 0 1 NA 1.02703637782623 25 0.435318779746521 3 3 0 -5.76456266064776 LTS-020 chr2 228144693 228846023 701331 * c(MIR5703, COL4A3, DAW1, AGFG1, C2orf83, MFF, CCL20, LOC654841, TM4SF20, SPHKAP, SLC19A3) 0.253584687455429 11 0.226107215115468 0.970528444597904 726 1.10045453260892 4 3 1 -6.77963527282956 LTS-020 chr2 228846024 230092723 1246700 * c(PID1, SPHKAP) 0.454 1 NA 0.969728569952325 217 0.17868527202307 3 3 0 -5.77003584722069 LTS-020 chr2 230092724 230272084 179361 * c(PID1, DNER) 0.441 1 NA 0.985175278958124 72 0.204108538721509 3 3 0 -5.76694086292947 LTS-020 chr2 230272085 230282724 10640 * DNER NA 0 NA 0.771 1 NA NA NA NA NA LTS-020 chr2 230282725 234396542 4113818 * c(MIR1471, MIR4777, NMUR1, SP140, CHRND, CHRNG, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, ATG16L1, USP40, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SCARNA6, SCARNA5, ARMC9, EFHD1, ITM2C, DGKD, DNER, NA NA NA NA NA NA NA NA NA LTS-020 GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.415834071121081 135 0.108990413462123 0.921568046254324 4319 0.254814925767134 3 2 1 -6.90620821472938 LTS-020 NA NA NA NA LTS-020 chr2 234396543 234429752 33210 * USP40 0 1 NA 0.905556736493435 85 0.364564928146872 3 3 0 -5.7648306397212 LTS-020 chr2 234429753 234681416 251664 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.305235381477145 9 0.224303923282675 0.886281725635259 329 0.40000797278269 3 2 1 -6.78111496218117 LTS-020 chr2 234681417 234681544 128 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0.417 1 NA 1.05885622813761 3 0.644118777866319 3 3 0 -5.76441209950476 LTS-020 chr2 234681545 242836535 8154991 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, NA NA NA NA NA NA NA NA NA LTS-020 PRLH, THAP4, ANKMY1, PDCD1, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, PPP1R7, HJURP, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, SPP2, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.435439782328309 238 0.0769156556442357 0.945170745040889 7506 0.474276748959071 3 2 1 -7.19563842967624 LTS-020 NA NA NA NA LTS-020 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.914252273731201 25 0.122774345854498 3 NA NA -5.7794230033281 LTS-020 chr3 239351 449992 210642 * CHL1 0 1 NA 1.0442700013788 187 0.556797827812635 3 3 0 -5.76767823398555 LTS-020 chr3 449993 10085130 9635138 * c(EGOT, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, ARPC4, TADA3, CHL1, IL17RE, CPNE9, CIDECP, CNTN4, FANCD2, THUMPD3, TTLL3, CNTN6, SUMF1, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, IL5RA, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, OGG1, OXTR, SSUH2, TRNT1, CRBN, ARL8B, SETD5, EMC3, RAD18, LRRN1, CIDEC, SETMAR, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, BHLHE40, CAV3, NA NA NA NA NA NA NA NA NA LTS-020 EDEM1, SRGAP3) 0.43885343771723 81 0.10741310585139 0.990353078665457 4256 0.27689291008231 3 2 1 -7.10034983184775 LTS-020 NA NA NA NA LTS-020 chr3 10085131 10085536 406 * FANCD2 0.304 1 NA 1.47555873152738 7 0.580377422356308 5 5 0 -5.76441178202072 LTS-020 chr3 10085537 10167270 81734 * c(FANCD2OS, FANCD2, BRK1) 0.276335040869818 14 0.189625889640571 0.968667316622896 204 0.680637499395179 5 4 1 -6.75223046767076 LTS-020 chr3 10167271 10183337 16067 * c(BRK1, VHL) 0.454 1 NA 0.990212983178734 43 0.25708811955857 3 3 0 -5.76460344486118 LTS-020 chr3 10183338 10353626 170289 * c(GHRLOS, IRAK2, GHRL, SEC13, VHL, LINC00852, TATDN2) 0.466521839617575 13 0.0340636658821879 0.921153954473141 293 0.219901653582046 2 1 1 -8.83443027636052 LTS-020 chr3 10353627 10354820 1194 * SEC13 0 1 NA 1.08404209497795 15 1.69816442919154 4 4 0 -5.76441194747983 LTS-020 chr3 10354821 12938692 2583872 * c(MIR885, MKRN2OS, SLC6A1-AS1, ATG7, TAMM41, CAND2, MKRN2, LINC00606, HRH1, ATP2B2, PPARG, TMEM40, RAF1, RPL32, SEC13, SLC6A1, SLC6A11, SYN2, TIMP4, TSEN2, VGLL4, IQSEC1) 0.391526459261882 34 0.181821054121697 0.994499341496242 1804 0.306957138859947 3 2 1 -6.77256399061529 LTS-020 chr3 12938693 12939546 854 * IQSEC1 0.486 1 NA 0.972457306923391 19 0.145187799335975 3 3 0 -5.76441827741953 LTS-020 chr3 12939547 15113123 2173577 * c(FGD5P1, FGD5-AS1, CHCHD4, FGD5, FBLN2, NUP210, LSM3, LINC00620, TPRXL, CCDC174, RBSN, MRPS25, SLC6A6, NR2C2, WNT7A, XPC, TMEM43, HDAC11, GRIP2, C3orf20, IQSEC1) 0.451522551106985 60 0.0718263186895805 0.988141699486923 1984 0.251269055014228 3 2 1 -7.5155050955757 LTS-020 chr3 15113124 15113519 396 * RBSN 0.426 1 NA 1.10707960472248 9 0.236576097693744 4 4 0 -5.76442771372076 LTS-020 chr3 15113520 15452662 339143 * c(SH3BP5-AS1, METTL6, CAPN7, COL6A4P1, RBSN, SH3BP5) 0.308253053276087 9 0.226552667411159 0.97684969405533 387 0.340475218652314 3 2 1 -6.77187485984347 LTS-020 chr3 15452663 15456291 3629 * METTL6 0.44 1 NA 0.930288773179975 25 0.163871362151333 3 3 0 -5.76446500666686 LTS-020 chr3 15456292 15642844 186553 * c(MIR4270, METTL6, HACL1, COLQ, EAF1) 0.463713839430559 14 0.0158002642904589 0.916443699063478 358 0.233763375875397 2 1 1 -11.6920767994943 LTS-020 chr3 15642845 15793197 150353 * c(ANKRD28, HACL1, BTD) 0 1 NA 0.898242315342134 237 0.203152150939588 3 3 0 -5.77255205559246 LTS-020 chr3 15793198 16450872 657675 * c(GALNT15, RFTN1, ANKRD28, DPH3, MIR563, OXNAD1) 0.305304805636719 9 0.232490202899917 1.0077259414899 391 0.436572141060093 3 2 1 -6.77886567326236 LTS-020 chr3 16450873 16679606 228734 * c(DAZL, RFTN1) 0.492 1 NA 0.875638467119955 123 0.291683119811632 3 3 0 -5.77647200079069 LTS-020 chr3 16679607 21706369 5026763 * c(MIR3714, MIR4791, SGO1-AS1, KCNH8, SGO1, PP2D1, EFHB, PLCL2, LOC339862, VENTXP7, RAB5A, SATB1, ZNF385D, KAT2B, TBC1D5) 0.430250948203713 34 0.116027287957627 0.954040683361561 1168 0.28490298184735 3 2 1 -6.91489121047766 LTS-020 chr3 21706370 24020775 2314406 * c(MIR548AC, NKIRAS1, RPL15, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0 1 NA 1.02784087230047 313 0.292250249938873 3 3 0 -5.8514528953038 LTS-020 chr3 24020776 27204146 3183371 * c(MIR4792, MIR4442, LRRC3B, LINC00691, NEK10, LINC00692, OXSM, NGLY1, RARB, THRB-AS1, THRB, TOP2B, NR1D2) 0.345996976438085 7 0.222322481351495 0.972247600019112 685 0.323890191511607 3 2 1 -6.74355201324793 LTS-020 chr3 27204147 27204149 3 * NEK10 NA 0 NA 0.86 1 NA NA NA NA NA LTS-020 chr3 27204150 28552523 1348374 * c(ZCWPW2, CMC1, NEK10, AZI2, EOMES, SLC4A7) 0.379543770544596 23 0.180712599113235 0.888021616581703 719 0.35933149797547 3 2 1 -6.7694745307501 LTS-020 chr3 28552524 28579634 27111 * ZCWPW2 NA 0 NA 0.883751678068473 35 0.284185295807051 3 NA NA -5.76561451164894 LTS-020 chr3 29322426 29804487 482062 * RBMS3 0.427 1 NA 1.16411842588845 39 0.237836205672612 4 4 0 -5.76543991059443 LTS-020 chr3 29804488 43120835 13316348 * c(ACVR2B-AS1, PDCD6IP, KRBOX1, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, NA NA NA NA NA NA NA NA NA LTS-020 MOBP, EIF1B-AS1, MYD88, NKTR, VILL, DYNC1LI1, SS18L2, PLCD1, CMTM6, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, CSRNP1, GORASP1, STAC, TGFBR2, FAM198A, UBP1, VIPR1, POMGNT2, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.443249691755533 177 0.0803413968561228 0.995140075475897 9051 0.405241455287658 3 2 1 -7.33148437064234 LTS-020 NA NA NA NA LTS-020 chr3 43120836 43122966 2131 * POMGNT2 0.378 1 NA 0.925255148317652 41 0.117289801606856 3 3 0 -5.76450198088701 LTS-020 chr3 43122967 45017905 1894939 * c(SNRK-AS1, ZNF197, ZNF501, TMEM42, EXOSC7, TCAIM, ZNF660, ZNF445, TOPAZ1, MIR138-1, ABHD5, ZDHHC3, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, MIR564, TGM4, ZNF35, POMGNT2, ZNF502) 0.345348246401218 29 0.194762397873963 0.971953143627346 1889 0.321593939557618 3 2 1 -6.74285962106873 LTS-020 chr3 45017906 45052775 34870 * EXOSC7 0.5 1 NA 0.947111820862566 33 0.164124975478315 3 3 0 -5.7644610382919 LTS-020 chr3 45052776 46714821 1662046 * c(LOC100132146, LARS2-AS1, CXCR6, CCR9, CCR1, CCR3, CCR5, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, XCR1, LTF, LZTFL1, SLC6A20, LIMD1-AS1, CDCP1, TDGF1, CLEC3B, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2) 0.416240533353471 60 0.130622494839871 0.949228268335805 2099 0.28513495591908 3 2 1 -6.82300806420473 LTS-020 chr3 46714822 46720794 5973 * ALS2CL 0 1 NA 1.14306334343098 33 0.382896697141433 4 4 0 -5.76443586209501 LTS-020 chr3 46720795 47168032 447238 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.275028446203252 9 0.238307574365566 1.0503004981041 1013 0.26941948620911 4 3 1 -6.79404963142502 LTS-020 chr3 47168033 47451436 283404 * c(KLHL18, PTPN23, KIF9-AS1, SETD2, KIF9) 0.497 1 NA 0.969366050803881 335 0.232375475865882 3 3 0 -5.76513085571771 LTS-020 chr3 47451437 48677895 1226459 * c(MIR1226, MIR711, MIR4443, NME6, CSPG5, TREX1, COL7A1, CELSR3, DHX30, SCAP, PTPN23, FBXW12, MAP4, TMEM89, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, SPINK8, SLC26A6, SMARCC1, UQCRC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.458493475830605 23 0.100743147748032 0.993634361054044 2776 0.213489002789656 3 2 1 -7.23161295378899 LTS-020 chr3 48677896 48716021 38126 * c(MIR4793, CELSR3, NCKIPSD) 0 1 NA 0.998077247702615 313 0.224873319334475 3 3 0 -5.76529847033945 LTS-020 chr3 48716022 49726070 1010049 * c(BSN-AS2, MIR4271, ARIH2, USP19, WDR6, DAG1, KLHDC8B, LAMB2P1, NDUFAF3, AMT, GPX1, APEH, CCDC36, IMPDH2, C3orf62, RHOA, LAMB2, MIR191, MST1, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, ARIH2OS, C3orf84, CCDC71, TCTA, USP4, SLC25A20, NICN1, BSN) 0.347759834273198 9 0.19976180259944 0.980475353854803 2690 0.219381228043058 3 2 1 -6.74654907246078 LTS-020 chr3 49726071 49763253 37183 * c(GMPPB, AMIGO3, MST1, RNF123, IP6K1) 0.477 1 NA 1.00258433802581 333 0.177894749340861 3 3 0 -5.76609006822898 LTS-020 chr3 49763254 50416501 653248 * c(RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, LSMEM2, NAT6, GNAI2, GNAT1, HYAL1, CDHR4, FAM212A, MST1R, ZMYND10, SEMA3F, UBA7, IFRD2, SEMA3B, CAMKV, HYAL3, MON1A, HYAL2, CACNA2D2, IP6K1) 0.465038343432685 15 0.0430110727714664 0.986776848444436 2155 0.196066779370659 4 2 2 -8.39026295975913 LTS-020 chr3 50416502 50622276 205775 * c(C3orf18, HEMK1, CACNA2D2) 0 1 NA 1.02203262869633 269 0.223501516172111 3 3 0 -5.77582916216176 LTS-020 chr3 50622277 52843048 2220772 * c(SNORD19B, LINC00696, PARP3, IQCF4, ABHD14A-ACY1, MIR4787, NISCH, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, GRM2, RBM15B, ITIH1, ITIH3, IQCF2, IQCF5, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, TEX264, HEMK1, PHF7, TLR9, PBRM1, GLT8D1, SEMA3G, PCBP4, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TNNC1, MAPKAPK3, MANF, WDR82, BAP1, ABHD14B, NA NA NA NA NA NA NA NA NA LTS-020 RRP9, ACY1, DCAF1) 0.249426761758372 17 0.242915608076259 0.982377952958252 4297 0.276839009635361 3 3 0 -6.85273495244125 LTS-020 NA NA NA NA LTS-020 chr3 52843049 53212574 369526 * c(TMEM110-MUSTN1, ITIH4, TMEM110, MUSTN1, SFMBT1, PRKCD, RFT1) 0.372 1 NA 0.982612835909599 578 0.230346278775197 3 3 0 -5.76785059770762 LTS-020 chr3 53212575 56468948 3256374 * c(MIR3938, CACNA2D3-AS1, ERC2, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, LRTM1, SELENOK, TKT, ERC2-IT1, WNT5A, CACNA1D, ESRG, ACTR8) 0.414091082282848 17 0.116715528983432 1.02270141835162 1337 0.321354864788243 3 2 1 -6.92365737554697 LTS-020 chr3 56468949 57199350 730402 * c(ARHGEF3-AS1, FAM208A, ERC2, CCDC66, SPATA12, ARHGEF3, IL17RD) 0.442226065453199 2 0.0961665222413705 0.929211646626178 742 0.197032405377394 3 2 1 -7.10177750408726 LTS-020 chr3 57199351 57306421 107071 * c(ASB14, APPL1, IL17RD, HESX1) 0 1 NA 0.965864557879702 193 0.557047581536672 3 3 0 -5.76443756542685 LTS-020 chr3 57306422 57847778 541357 * c(ASB14, DNAH12, PDE12, DENND6A, APPL1, ARF4, SLMAP) 0.282614453678308 19 0.222420101956604 0.942638959689743 733 0.399543118096537 3 2 1 -6.81534825213612 LTS-020 chr3 57847779 57882601 34823 * SLMAP 0.429 1 NA 0.948717893685233 27 0.325028142546601 3 3 0 -5.76441823889145 LTS-020 chr3 57882602 59033091 1150490 * c(RPP14, FAM107A, FAM3D, DNASE1L3, C3orf67, KCTD6, FLNB, PDHB, PXK, ABHD6, SLMAP, ACOX2) 0.450821541035886 39 0.039409045592274 0.964941273795 1373 0.234076282624277 4 2 2 -8.29096044908191 LTS-020 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.673 1 NA NA NA NA NA LTS-020 chr3 59035205 67061492 8026288 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.424061637929878 40 0.12498541196927 1.04733810378511 2201 0.270952271007001 3 2 1 -7.3768355048519 LTS-020 chr3 67061493 73453325 6391833 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.405218134428034 30 0.14162578179472 0.966480607388404 2022 0.322952608208371 3 2 1 -6.78551615622668 LTS-020 chr3 73453326 74418487 965162 * c(PDZRN3, CNTN3) NA 0 NA 1.00507043895503 186 0.236608100943611 3 NA NA -5.79150979471243 LTS-020 chr3 74418488 75679988 1261501 * c(MIR1324, CNTN3, FAM86DP) 0.309 1 NA 1.18247347395211 39 0.314701014845741 4 4 0 -5.76442624289048 LTS-020 chr3 75679989 75790607 110619 * c(ZNF717, MIR1324) 0.329115331512713 190 0.0911303119222374 1.36448184428571 334 0.85584580911699 7 5 2 -6.7557652424125 LTS-020 chr3 75790608 75790614 7 * ZNF717 NA 0 NA 1.019 1 NA NA NA NA NA LTS-020 chr3 75790615 75986794 196180 * c(ZNF717, ROBO2) 0.342034070809568 5 0.0556749494835873 1.06833091227941 21 0.355625773076405 3 2 1 -6.84858392843997 LTS-020 chr3 75986795 75986813 19 * ROBO2 0.458 1 NA 1.647 1 NA NA NA NA NA LTS-020 chr3 75986814 90264768 14277955 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.453876573050021 31 0.0427327780817096 1.02287347659863 1625 0.295447909108509 3 2 1 -9.02320497666594 LTS-020 chr3 90264769 90283666 18898 * character(0) NA 0 NA 1.22350846863533 7 0.271500416556727 4 NA NA -5.76460469609172 LTS-020 chr3 93591838 93778710 186873 * c(ARL13B, DHFR2, STX19, PROS1) 0 1 NA 1.32616207524324 249 0.26639852377231 5 5 0 -5.76989757226446 LTS-020 chr3 93778711 113563490 19784780 * c(ZBTB11-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, MIR4446, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, DHFR2, GABRR3, USF3, ALCAM, MYH15, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, LINC00636, EPHA6, SLC9C1, PDCL3P4, GTPBP8, NA NA NA NA NA NA NA NA NA LTS-020 TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NSUN3, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, OR5H6, OR5H2, ZBED2, CEP97, C3orf52, NAA50, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MINA, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.341102029049051 123 0.116431498669591 1.29839517637536 8504 0.40095712086422 5 3 2 -7.25498232958404 LTS-020 NA NA NA NA LTS-020 chr3 113563491 113588313 24823 * GRAMD1C NA 0 NA 2.114 1 NA NA NA NA NA LTS-020 chr3 113588314 114035490 447177 * c(DRD3, TIGIT, ZDHHC23, GRAMD1C, CCDC191, MIR568, ZNF80, QTRT2) 0.250890100080096 15 0.0770775737874019 1.60972162152677 603 0.714191990359125 5 4 1 -6.75076589355562 LTS-020 chr3 114035491 119542102 5506612 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, COX17, ADPRH, IGSF11, C3orf30, GAP43, ZBTB20, TUSC7, GSK3B, LSAMP, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, UPK1B, B4GALT4, NR1I2, MAATS1, CD80) 0.34032661251563 26 0.109875684998302 1.25681468099031 1584 0.332153783371644 4 3 1 -6.90227168190508 LTS-020 chr3 119542103 119721147 179045 * GSK3B NA 0 NA 1.22861699016948 125 0.395358098682129 4 NA NA -5.76549491900431 LTS-020 chr3 119721148 119812135 90988 * GSK3B NA 0 NA 1.048 1 NA NA NA NA NA LTS-020 chr3 119812136 119886108 73973 * c(GPR156, GSK3B) 0.479 1 NA 0.911185529754059 59 0.156836832200033 3 3 0 -5.76835383629755 LTS-020 chr3 119886109 120115385 229277 * c(FSTL1, LRRC58, GPR156, MIR198) 0.471306327322678 11 0.0170986442843764 1.00835972963782 315 0.28267337322722 4 2 2 -11.7382012050849 LTS-020 chr3 120115386 120321299 205914 * c(FSTL1, NDUFB4) 0 1 NA 1.01994051622717 85 0.323018353321654 3 3 0 -5.76956147828619 LTS-020 chr3 120321300 121150335 829036 * c(POLQ, RABL3, GTF2E1, HGD, STXBP5L) 0.236959572851424 9 0.241499194845679 0.992132887025707 503 0.509809879978831 3 3 0 -6.81870672538842 LTS-020 chr3 121150336 121289499 139164 * c(POLQ, ARGFX) 0.483 1 NA 0.957890941640183 223 0.173491323135565 3 3 0 -5.7644389159914 LTS-020 chr3 121289500 141161766 19872267 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, CCDC58, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, CSTA, DTX3L, ROPN1B, C3orf22, NUDT16P1, PARP15, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, NA NA NA NA NA NA NA NA NA LTS-020 DNAJC13, LINC01565, ZBTB38, NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, FAM162A, SEC22A, NPHP3, ATP2C1, GOLGB1, GP9, DNAJB8-AS1, ILDR1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, HCLS1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, KPNA1, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, ARGFX, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, FBXO40, PIK3CB, PLXNA1, IL20RB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SEMA5B, WDR5B, PARP14, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, EAF2, MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLC15A2, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, HSPBAP1, EFCC1, NEK11, UBA5, C3orf36, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CEP63, CEP70, ABTB1, SLC35G2, PARP9, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2, CD86, IQCB1) 0.424711653237017 312 0.127614077840076 0.982782785863158 15732 0.288423076124659 3 2 1 -6.97711883128703 LTS-020 NA NA NA NA LTS-020 chr3 141161767 158451924 17290158 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, LOC100507389, ARHGEF26-AS1, LOC100507537, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, GPR171, GYG1, LINC00880, AADACL2, GPR149, NA NA NA NA NA NA NA NA NA LTS-020 PAQR9, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, SIAH2, P2RY12, HLTF, SSR3, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, EIF2A, ZIC4, HPS3, GFM1, GMPS, SLC33A1, CHST2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RNF7, TSC22D2, P2RY14) 0.427363251506005 145 0.116609944339125 0.949708386779065 8355 0.428268411147928 3 2 1 -6.89947439162376 LTS-020 NA NA NA NA LTS-020 chr3 158451925 158519581 67657 * character(0) NA 0 NA 0.55 1 NA NA NA NA NA LTS-020 chr3 158519582 158539961 20380 * MFSD1 0.309 1 NA 0.618028332622116 81 0.153930625106504 2 2 0 -5.77841832308438 LTS-020 chr3 158539962 159557953 1017992 * c(MIR3919, IQCJ-SCHIP1, SCHIP1, MFSD1, IQCJ) 0.219 1 NA 0.645517061059066 161 0.17321793573666 2 2 0 -6.0505100231797 LTS-020 chr3 159557954 165490764 5932811 * c(IQCJ-SCHIP1, SMC4, LOC101243545, OTOL1, PPM1L, SPTSSB, SLITRK3, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, NMD3, IFT80, BCHE, LINC01192, SI, SCARNA7, ARL14, B3GALNT1) 0.107514255492075 6 0.0993587775018728 0.646375358472476 1634 0.20236837421309 2 2 0 -8.18193771721112 LTS-020 chr3 165490765 183704813 18214049 * c(LOC100128164, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, PDCD10, DNAJC19, TTC14, WDR49, LRRC34, ECT2, RPL22L1, MECOM, NLGN1, TNIK, MCF2L2, ATP11B, NAALADL2, GHSR, GPR160, LAMP3, KCNMB3, GOLIM4, CCDC39, LRRIQ4, SAMD7, SOX2-OT, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, SERPINI1, SERPINI2, PIK3CA, PLD1, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, MYNN, EIF5A2, MCCC1, NA NA NA NA NA NA NA NA NA LTS-020 MRPL47, NCEH1, SLC7A14, BCHE, GNB4, ZMAT3, LINC01330, FNDC3B, SKIL, SLC2A2, SOX2, MIR551B, MIR569, TERC, SEC62, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTRT3, ACTL6A, TNFSF10, USP13, KLHL6, EGFEM1P) 0.130813457025794 116 0.0609645262695312 0.969346716972213 7475 0.285443536104725 3 3 0 -6.80340138223704 LTS-020 NA NA NA NA LTS-020 chr3 183704814 189688683 5983870 * c(MIR944, LOC100131635, MIR1224, ABCC5, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, RPL39L, AP2M1, CLCN2, FAM131A, RTP1, CRYGS, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, VPS8, LOC253573, FETUB, HTR3E, C3orf70, TPRG1, HRG, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, KNG1, FLJ42393, LPP, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, SENP2, RFC4, BCL6, SNORA63, SNORD2, NA NA NA NA NA NA NA NA NA LTS-020 SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, ST6GAL1, SST, SNORA81, SNORD66, THPO, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.124706001055402 133 0.0538759862614896 1.00451148948715 5662 0.318684048273002 3 3 0 -6.92008727415185 LTS-020 NA NA NA NA LTS-020 chr3 189688684 190024057 335374 * c(P3H2, CLDN1) 0.151735802840099 3 0.0684397545290747 0.658760355255972 83 0.208446004286264 2 2 0 -6.97661444567973 LTS-020 chr3 190024058 190024103 46 * CLDN1 0.187 1 NA 0.577244161593137 5 0.16982932608946 1 1 0 -5.76442792187699 LTS-020 chr3 190024104 195452014 5427911 * c(DPPA2P3, LINC00887, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, CLDN16, LRRC15, FAM43A, TMEM207, CPN2, MB21D2, XXYLT1, CCDC50, PYDC2, MUC20, FGF12, ACAP2, UTS2B, GP5, HES1, OSTN, ATP13A5, APOD, IL1RAP, LINC00884, OPA1, PPP1R2, LSG1, HRASLS, GMNC, LOC647323, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, CLDN1, TMEM44) 0.179694629608927 98 0.0877840410941444 0.661631953458249 2807 0.242909185403789 2 2 0 -7.22090667015907 LTS-020 chr3 195452015 195452618 604 * MUC20 NA 0 NA 1.573 1 NA NA NA NA NA LTS-020 chr3 195452619 195476016 23398 * c(MUC20, MUC4) 0.289596830874341 12 0.122239209104216 1.07883866179473 85 1.92466804566252 8 6 2 -6.73631573280921 LTS-020 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.516 1 NA NA NA NA NA LTS-020 chr3 195477782 197610193 2132412 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.193253069734933 67 0.0878096935910678 0.613731992082752 2887 0.224192159057777 2 2 0 -7.4046337791546 LTS-020 chr3 197610194 197770512 160319 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 0.612063005432181 283 0.14198518045667 2 NA NA -5.90653156710759 LTS-020 chr4 53174 68100 14927 * c(ZNF595, ZNF718) 0.319 1 NA 1.04954389268161 20 0.480307782353642 3 3 0 -5.76475750671226 LTS-020 chr4 68101 1714073 1645973 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, ZNF718, GAK, CRIPAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, ZNF141, SLBP, ABCA11P, MFSD7, TMEM175, CTBP1-AS2) 0.136261479554649 87 0.0489401327592545 0.96885961095471 2334 0.305890421492869 3 3 0 -6.76187790652964 LTS-020 chr4 1714074 1714171 98 * character(0) NA 0 NA 1.774 1 NA NA NA NA NA LTS-020 chr4 1714172 2133042 418871 * c(MIR943, TACC3, FGFR3, NAT8L, POLN, LETM1, C4orf48, SCARNA22, WHSC1, NELFA, TMEM129) 0.126495764720784 10 0.0500271037649704 1.28464046223633 1145 0.271606966441065 4 4 0 -6.77141519729446 LTS-020 chr4 2133043 2158060 25018 * POLN NA 0 NA 1.04 1 NA NA NA NA NA LTS-020 chr4 2158061 3449886 1291826 * c(MIR4800, HTT-AS, MFSD10, MXD4, ADD1, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, POLN, CFAP99, ZFYVE28, RGS12, RNF4, SH3BP2, TNIP2, HAUS3, NOP14, FAM193A) 0.135877568745311 80 0.0451674521550332 0.977665566667101 2312 0.310380250827773 3 3 0 -6.77107998953112 LTS-020 chr4 3449887 3487237 37351 * c(DOK7, HGFAC) 0.125 1 NA 1.04847624881991 19 0.209562660729267 3 3 0 -5.76887552837838 LTS-020 chr4 3487238 3526786 39549 * c(DOK7, LRPAP1) 0.116743709042351 27 0.0440252776393866 1.15225250810155 221 0.551588255699472 4 4 0 -6.73435249530529 LTS-020 chr4 3526787 3589560 62774 * c(LINC00955, LRPAP1) 0.46 1 NA 1.08888269257239 13 0.685429848287246 4 4 0 -5.76493612569683 LTS-020 chr4 3589561 4190595 601035 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.370108933689674 21 0.0760600326809591 1.19722089988408 92 0.633680290040385 5 3 2 -6.77741006298763 LTS-020 chr4 4190596 4199634 9039 * OTOP1 0.156 1 NA 1.13283793922745 15 0.279666893694215 4 4 0 -5.76452914290543 LTS-020 chr4 4199635 10094671 5895037 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, OTOP1, CRMP1, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, HMX1, USP17L6P, USP17L9P, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, AFAP1, S100P, DEFB131, LOC650293, NA NA NA NA NA NA NA NA NA LTS-020 USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, MRFAP1, LOC93622, TADA2B, HTRA3, KIAA0232, WDR1) 0.142764012910597 136 0.0532464897530717 1.00275451534585 3853 0.295377916234407 3 3 0 -6.83188722269096 LTS-020 NA NA NA NA LTS-020 chr4 10094672 10094783 112 * WDR1 0.105 1 NA 1.03005793114062 3 0.297247371729339 3 3 0 -5.76441447209859 LTS-020 chr4 10094784 16020112 5925329 * c(MIR5091, C1QTNF7, CLNK, CPEB2, LINC01085, BOD1L1, FBXL5, LINC01097, LINC01096, FAM200B, CPEB2-AS1, CC2D2A, NKX3-2, BST1, MIR572, FGFBP2, ZNF518B, PROM1, RAB28, CD38, WDR1, HS3ST1, FGFBP1) 0.0919686773322088 33 0.0659152060903961 1.03397837754811 1922 0.357074953617077 4 4 0 -7.28565658362362 LTS-020 chr4 16020113 16026970 6858 * PROM1 NA 0 NA 0.955059257317782 15 0.182433627852511 3 NA NA -5.76441014304017 LTS-020 chr4 16026971 16034916 7946 * PROM1 NA 0 NA 0.579 1 NA NA NA NA NA LTS-020 chr4 16034917 16037352 2436 * PROM1 0.298 1 NA 0.600012638393869 7 0.0649780182611232 1 1 0 -5.77517400227182 LTS-020 chr4 16037353 17847477 1810125 * c(MIR548AX, TAPT1, TAPT1-AS1, LCORL, FAM184B, LAP3, DCAF16, QDPR, NCAPG, CLRN2, MED28, PROM1, LDB2) 0.229887810955039 10 0.042903509309975 0.6312172640421 923 0.174838750885951 2 2 0 -7.83469070480159 LTS-020 chr4 17847478 17847571 94 * LCORL 0 1 NA 2.235 1 NA NA NA NA NA LTS-020 chr4 17847572 17875709 28138 * LCORL 0.481 1 NA 1.04907790792033 23 0.167746915524501 3 3 0 -5.76972402636753 LTS-020 chr4 17875710 38699657 20823948 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR4801, SLC34A2, PTTG2, PPARGC1A, ARAP2, PACRGL, DHX15, ADGRA3, TBC1D1, SEL1L3, LCORL, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, DTHD1, MIR218-1, PCDH7, SEPSECS, KLF3, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, NWD2, STIM2, GBA3, SOD3, MIR573, RELL1, KLF3-AS1, KCNIP4, CCKAR, CCDC149, SLIT2) 0.423860401147649 92 0.125344404186122 0.97613215177087 3916 0.285885530275845 3 2 1 -6.93445427449622 LTS-020 chr4 38699658 38701940 2283 * KLF3 0 1 NA 1.12422141032611 51 0.717719908227901 4 4 0 -5.76441653370942 LTS-020 chr4 38701941 38776180 74240 * c(KLF3, TLR10) 0.295497171284167 9 0.219143281388633 1.11982880044746 69 1.01462161274551 4 3 1 -6.73479850033914 LTS-020 chr4 38776181 38776491 311 * TLR10 0.442 1 NA 1.13488195818627 7 0.873125884121992 4 4 0 -5.7644105177963 LTS-020 chr4 38776492 41691709 2915218 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, LIAS, KLB, SMIM14, LIMCH1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, LOC401127, KLHL5, RBM47, CHRNA9, N4BP2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, NSUN7, TMEM156, TLR10, FAM114A1) 0.415496997306061 47 0.145459519404486 0.960063322028648 2469 0.255248684393417 3 2 1 -6.80418545575528 LTS-020 chr4 41691710 41699709 8000 * LIMCH1 0 1 NA 1.14712239607294 21 1.25463501807156 4 4 0 -5.76441268118837 LTS-020 chr4 41699710 41986527 286818 * c(LIMCH1, DCAF4L1, TMEM33, PHOX2B) 0.30302207949628 10 0.243409485800734 1.02070215575539 348 0.403111673525183 4 3 1 -6.75557565066244 LTS-020 chr4 41986528 42400112 413585 * c(SLC30A9, SHISA3, DCAF4L1, BEND4) 0.484 1 NA 0.990065657062176 351 0.2125475715001 3 3 0 -5.7716228229573 LTS-020 chr4 42400113 46922950 4522838 * c(ATP8A1, GNPDA2, SHISA3, COX7B2, GABRA2, GABRA4, GABRG1, YIPF7, KCTD8, GRXCR1, GUF1) 0.43569487187942 40 0.0798358853507844 0.995818926527861 1205 0.32824163231425 3 2 1 -7.20972351518629 LTS-020 chr4 46922951 46924265 1315 * GABRA4 0 1 NA 1.02303812881236 27 0.478397523909971 3 3 0 -5.76442654458392 LTS-020 chr4 46924266 46979547 55282 * GABRA4 0.286409481222679 11 0.230338130897719 1.07198329156718 157 0.705368875909903 4 3 1 -6.73843448451081 LTS-020 chr4 46979548 47034075 54528 * c(GABRA4, GABRB1) 0.461 1 NA 1.04118432919397 49 0.187532262530467 3 3 0 -5.77137887896782 LTS-020 chr4 47034076 48988450 1954375 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, SLC10A4, GABRB1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.397816322570543 35 0.150379586939409 0.975728831820762 1657 0.376367600319391 3 2 1 -6.76467303613449 LTS-020 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.906096676712163 87 0.201777498865416 3 NA NA -5.76746605009075 LTS-020 chr4 52709193 52936068 226876 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0 1 NA 1.04313970449726 335 0.243793589886134 3 3 0 -5.78228589483687 LTS-020 chr4 52936069 56238886 3302818 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.385401573548221 10 0.149759065761568 1.02911104140231 1333 0.248962542352321 3 2 1 -6.91809297748876 LTS-020 chr4 56238887 68906584 12667698 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, LOC401134, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.397264789757319 56 0.156167492501755 0.969860294405859 2897 0.303792492504582 3 2 1 -6.77798734687515 LTS-020 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.325946300934355 41 0.299027507095919 0 NA NA -5.76456544691267 LTS-020 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 1.01 1 NA NA NA NA NA LTS-020 chr4 68907461 69363297 455837 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.467591037292603 11 0.0330190027931575 1.01125918869614 402 0.307277954100865 4 2 2 -8.92498047513613 LTS-020 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 2.198 1 NA NA NA NA NA LTS-020 chr4 69402959 69512573 109615 * UGT2B17 0.255093097260987 2 0.316076731190387 1.86510186837516 47 0.431895816487868 8 6 2 -6.7421301941311 LTS-020 chr4 69512574 69512595 22 * character(0) 0.466 1 NA 1.297 1 NA NA NA NA NA LTS-020 chr4 69512596 78532232 9019637 * c(FAM47E, CSN1S2BP, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, CSN1S1, CSN2, CSN3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, ART3, CXCL9, MTHFD2L, LOC441025, NA NA NA NA NA NA NA NA NA LTS-020 MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.422441293805483 136 0.126422816318253 0.995368767934848 5937 0.289161776268878 3 2 1 -6.96273800458104 LTS-020 NA NA NA NA LTS-020 chr4 78532233 78532366 134 * CXCL13 0 1 NA 1.69435106785675 3 4.65302098999492 6 6 0 -5.76441013972287 LTS-020 chr4 78532367 78987196 454830 * c(CXCL13, CNOT6L, MRPL1, FRAS1) 0.358875357515319 7 0.216828547584535 0.943109220950205 312 0.227319461900378 3 2 1 -6.7343752502743 LTS-020 chr4 78987197 78989669 2473 * FRAS1 NA 0 NA 0.607 1 NA NA NA NA NA LTS-020 chr4 78989670 84406304 5416635 * c(THAP9-AS1, LINC01094, LINC01088, LINC00989, HPSE, HELQ, PCAT4, ANTXR2, LIN54, PAQR3, RASGEF1B, FGF5, SEC31A, C4orf22, GK2, COQ2, ANXA3, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, BMP2K, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FRAS1, FAM175A, NAA11, HNRNPDL) 0.193154089823717 56 0.0918370592655571 0.624722337539608 3063 0.182776638155997 2 2 0 -8.44757583810907 LTS-020 chr4 84406305 84457547 51243 * GPAT3 NA 0 NA 1.003 1 NA NA NA NA NA LTS-020 chr4 84457548 125592065 41134518 * c(SNHG8, PP12613, MIR1243, MIR1973, MIR3684, LOC100506746, LOC100507053, GIMD1, SEC24B-AS1, MIR4451, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, STPG2-AS1, FAM13A, SPRY1, CDS1, SEC24B, PDLIM5, CENPE, RRH, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, TMEM155, ADAD1, C4orf32, C4orf36, TRAM1L1, SLC9B2, SLC9B1, PPM1K, SPATA5, BBS12, TIGD2, SGMS2, SYNPO2, DMP1, DSPP, EGF, NA NA NA NA NA NA NA NA NA LTS-020 EIF4E, ENPEP, FABP2, FGF2, MMRN1, WDFY3, METAP1, NPNT, LOC256880, NAP1L5, PPA2, DAPP1, DKK2, HPGDS, LINC01091, RPL34-AS1, FAM13A-AS1, GPRIN3, STPG2, ANK2, GRID2, H2AFZ, HADH, ANXA5, IBSP, CFI, LRIT3, SLC10A6, HSD17B13, IL2, PCNAP1, CCSER1, LINC01061, C4orf3, WDFY3-AS2, MAD2L1, MANBA, AFF1, MIR302B, MTTP, ATOH1, NFKB1, NKX6-1, CISD2, HSD17B11, LEF1, HERC5, LARP7, PDHA2, EMCN, MYOZ2, PITX2, PKD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 NUDT9, EXOSC9, GAR1, USP53, TET2, ARHGEF38, HERC6, MCUB, BANK1, BBS7, PPP3CA, ZGRF1, AP1AR, MAPK10, BDH2, SMARCAD1, MEPE, INTS12, ANKRD50, KLHL8, METTL14, PTPN13, OSTC, IL21, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, BMPR1B, SNCA, SPP1, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UGT8, ELOVL6, NDNF, ARSJ, GSTCD, TNIP3, DNAJB14, ALPK1, CXXC4, PLA2G12A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CAMK2D, ARHGAP24, CASP6, SPARCL1, C4orf17, QRFPR, KIAA1109, COL25A1, GPAT3, PRSS12, UNC5C, LAMTOR3, PDE5A, CCNA2, HERC3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, ABCG2, SEC24D) 0.202724221628659 310 0.0878950562455737 0.650952466226604 16745 0.259981990119012 2 2 0 -9.55749402570467 LTS-020 NA NA NA NA LTS-020 chr4 125592066 125632406 40341 * ANKRD50 NA 0 NA 0.660882615840858 69 0.12431722650049 2 NA NA -5.77938592839491 LTS-020 chr4 126237480 126237971 492 * FAT4 0.36 1 NA 1.20426537478979 13 0.194566414736947 4 4 0 -5.76441315882857 LTS-020 chr4 126237972 148466117 22228146 * c(SCOC-AS1, MIR2054, LINC01095, LINC00499, ANAPC10, PGRMC2, CLGN, PLK4, LSM6, SCLT1, C4orf33, PABPC4L, ZNF827, MGAT4D, FREM3, MMAA, EDNRA, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, GYPA, GYPB, GYPE, IL15, SMAD1, MGST2, GUSBP5, NDUFC1, PCDH18, POU4F2, OTUD4, LARP1B, MAML3, RNF150, PCDH10, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, HHIP-AS1, C4orf51, UCP1, FAT4, NA NA NA NA NA NA NA NA NA LTS-020 JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, SLC10A7, USP38, SMARCA5, MGARP, INPP4B) 0.377408140685303 83 0.173787182264301 1.01445581636544 6420 0.503034411276758 3 2 1 -6.92343024464402 LTS-020 NA NA NA NA LTS-020 chr4 148466118 148538522 72405 * character(0) NA 0 NA 0.737 1 NA NA NA NA NA LTS-020 chr4 148538523 149357852 819330 * c(MIR4799, NR3C2, TMEM184C, ARHGAP10, PRMT9) 0.463 1 NA 0.918039672420119 455 0.186473557497663 3 3 0 -5.78613583631166 LTS-020 chr4 149357853 149358014 162 * NR3C2 0.491 1 NA 0.709534362579295 3 0.357412926459019 2 2 0 -5.76441068090267 LTS-020 chr4 149358015 151161470 1803456 * c(DCLK2, NR3C2) 0.252 1 NA 0.674595666493383 85 0.156379970706274 2 2 0 -6.01825103770513 LTS-020 chr4 151161471 155264805 4103335 * c(MIR3140, MAB21L2, SH3D19, DCLK2, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, GATB, DKFZP434I0714, DCHS2, FBXW7, RPS3A, SFRP2, TLR2, FAM160A1, MND1, FHDC1, SNORD73A, LRBA) 0.173046098533017 37 0.101840502689195 0.637860600844205 2347 0.225605055027643 2 2 0 -7.50924364763041 LTS-020 chr4 155264806 155278303 13498 * DCHS2 NA 0 NA 0.895 1 NA NA NA NA NA LTS-020 chr4 155278304 190862083 35583780 * c(CLDN24, MIR1305, MIR4276, MIR3945, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, ZFP42, SPATA4, ENPP6, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, RBM46, AGA, C4orf46, TMEM192, RWDD4, PRIMPOL, TRIML2, ETFDH, F11, ACSL1, FAT1, FGA, FGB, FGG, PALLD, ANP32C, FRG1, CCDC110, FAM149A, FBXO8, GK3P, PDLIM3, GLRB, NA NA NA NA NA NA NA NA NA LTS-020 GPM6A, CYP4V2, F11-AS1, LINC01098, GRIA2, SLC25A4, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC339975, TRIML1, LOC340017, ANKRD37, ING2, IRF2, KLKB1, LOC389247, TRIM61, HELT, LINC01060, FAM92A1P2, C4orf47, GALNTL6, MTNR1A, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, CLDN22, DCHS2, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, UFSP2, DDX60, CDKN2AIP, TENM3, LRP2BP, PDGFC, FSTL5, STOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CFAP97, FNIP2, SH3RF1, RXFP1, SPCS3, TRAPPC11, MSMO1, SLED1, FLJ38576, MIR578, TDO2, TLL1, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, MAP9, GLRA3, WWC2, CEP44, CASP3, SNX25, TKTL2, SORBS2, CBR4, SAP30, LOC90768, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.124023706200897 188 0.0689776411524123 0.98918199081643 11033 0.435158708810169 3 3 0 -6.93436215758161 LTS-020 NA NA NA NA LTS-020 chr4 190862084 190862155 72 * FRG1 0.094 1 NA 0.868362374018759 3 0.117285975291166 3 3 0 -5.76443802682855 LTS-020 chr4 190862156 190945944 83789 * FRG1 0.281358850801966 9 0.145404416867042 1.08672700158269 45 0.486102693145006 4 3 1 -6.75306811736507 LTS-020 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.947672550411656 23 0.233873492035074 3 NA NA -5.76443213729454 LTS-020 chr5 140347 163205 22859 * PLEKHG4B 0.343 1 NA 1.19445215043805 67 0.260496576378346 4 4 0 -5.76443700777208 LTS-020 chr5 163206 712144 548939 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.342340432557922 68 0.0855611172490112 1.24110415852608 1037 0.43086917225396 4 3 1 -6.83819369150447 LTS-020 chr5 712145 716871 4727 * character(0) NA 0 NA 1.896 1 NA NA NA NA NA LTS-020 chr5 716872 748684 31813 * character(0) 0.406973949500335 5 0.0820566877225738 2.34315114383857 48 0.715817097154025 10 5 5 -6.75141120172247 LTS-020 chr5 748685 751243 2559 * character(0) NA 0 NA 0.004 1 NA NA NA NA NA LTS-020 chr5 751244 796495 45252 * ZDHHC11 0.408492266140847 9 0.0493735759288306 1.08713986884403 44 0.632382698512883 4 2 2 -6.79439694202084 LTS-020 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 0.501 1 NA NA NA NA NA LTS-020 chr5 801171 840475 39305 * ZDHHC11 0.389 1 NA 0.530865332089783 65 0.533467320659418 1 1 0 -5.76465253291463 LTS-020 chr5 840476 44812020 43971545 * c(SNORD123, CCDC152, LOC100130744, LOC100132356, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506548, LOC100506639, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, NNT-AS1, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, PAIP1, SLC12A7, ADCY2, MRPS30, SUB1, PAPD7, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, NA NA NA NA NA NA NA NA NA LTS-020 FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, LOC153684, DAB2, DAP, UGT3A2, NIM1K, ADAMTS16, DNAH5, RANBP3L, FGF10, CCT5, PDZD2, FBXL7, ICE1, NNT, TTC33, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, FBXO4, GDNF, GHR, LINC01019, C5orf51, LOC285692, LOC285696, DROSHA, HMGCS1, SLC6A19, LINC01020, LOC340107, LOC340113, PLCXD3, SLC6A18, IL7R, C5orf34, ANXA2R, LIFR, FLJ33360, LOC401177, LINC01194, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, OXCT1, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, PRKAA1, ANKH, PRLR, CCL28, PRDM9, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, LINC01021, TMEM267, NIPBL-AS1, LOC648987, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 C6, LOC729506, LSP1P3, C7, C9, ZNF131, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, CARD6, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155) 0.324516550486109 288 0.130365506602219 1.31909361371425 15224 0.467425098698483 5 3 2 -7.31893717327814 LTS-020 NA NA NA NA LTS-020 chr5 44812021 45696278 884258 * c(MRPS30, HCN1) NA 0 NA 1.4437128545836 133 0.266745964656478 5 NA NA -5.7694339895175 LTS-020 chr5 49692017 49693677 1661 * EMB 0.228 1 NA 0.580512008750077 31 0.189306339890086 1 1 0 -5.76498229968004 LTS-020 chr5 49693678 68850398 19156721 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, NA NA NA NA NA NA NA NA NA LTS-020 FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.190212975460629 145 0.0958770914591524 0.613804594867842 8210 0.240222496007875 2 2 0 -9.9885341338621 LTS-020 NA NA NA NA LTS-020 chr5 68850399 68850480 82 * OCLN NA 0 NA 0.415 1 NA NA NA NA NA LTS-020 chr5 68850481 69373289 522809 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) 0.223 1 NA 0.918197544361778 39 0.316168940473883 3 3 0 -5.76920381285877 LTS-020 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.001 1 NA NA NA NA NA LTS-020 chr5 69717474 70307196 589723 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.339870010416683 40 0.195630327403498 0 NA NA -6.1286340166757 LTS-020 chr5 70307197 93807270 23500074 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-020 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.205848016985426 181 0.0904296748287062 0.634027044961945 10182 0.300789868026315 2 2 0 -8.84146976564718 LTS-020 NA NA NA NA LTS-020 chr5 93807271 96369079 2561809 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.207746375336592 43 0.0831224729838457 0.594007794453684 2253 0.17357451861252 1 1 0 -8.26760702770952 LTS-020 chr5 96369080 96371342 2263 * character(0) NA 0 NA 0.884116648839602 46 0.195040429352803 3 NA NA -5.76462124115575 LTS-020 chr5 96371343 121187690 24816348 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, PRR16, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, NA NA NA NA NA NA NA NA NA LTS-020 ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, FTMT, PJA2) 0.197205730139942 107 0.0953350198115504 0.627711147586498 6682 0.225551529729185 2 2 0 -10.2036625113777 LTS-020 NA NA NA NA LTS-020 chr5 121187691 121188505 815 * FTMT NA 0 NA 0.660621022928022 19 0.0673828200986308 2 NA NA -5.76544947293214 LTS-020 chr5 121188506 121297604 109099 * FTMT NA 0 NA 0.9 1 NA NA NA NA NA LTS-020 chr5 121297605 121413208 115604 * c(SRFBP1, LOX) 0.135 1 NA 0.988980186677667 169 0.257422907947617 3 3 0 -5.76570392797315 LTS-020 chr5 121413209 129521126 8107918 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, SNCAIP) 0.136125564914691 78 0.0448395908889556 1.00336817100332 2992 0.323418550119123 3 3 0 -6.87783306182886 LTS-020 chr5 129521127 130498228 977102 * c(HINT1, CHSY3) 0.333 1 NA 1.09883754352874 49 0.302947511506352 4 4 0 -5.79725592500929 LTS-020 chr5 130498229 130535923 37695 * c(HINT1, LYRM7) 0.366235340333504 2 0.00989949493661167 1.06105406543217 51 0.19357074604777 3 2 1 -6.74404661875764 LTS-020 chr5 130535924 130535929 6 * LYRM7 NA 0 NA 1.182 1 NA NA NA NA NA LTS-020 chr5 130535930 134332018 3796089 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, DDX46 NA NA NA NA NA NA NA NA NA LTS-020 ) 0.354428572290943 78 0.113117083260993 1.21772841212313 4427 0.402950844082799 4 2 2 -6.81417703224125 LTS-020 NA NA NA NA LTS-020 chr5 134332019 140553623 6221605 * c(SRA1, VTRNA2-1, MIR874, LINC01024, C5orf66, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, DCANP1, CTNNA1, SLC25A48, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL9, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, MZB1, PAIP2, NA NA NA NA NA NA NA NA NA LTS-020 FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PITX1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, TRPC7, PURA, ECSCR, SIL1, SPOCK1, TGFBI, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, CXCL14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 H2AFY, SMAD5-AS1, PCDHA9, MATR3, CDC25C, SLC23A1) 0.339085774781038 119 0.127742000926636 1.26411266015368 6661 0.421938000790134 4 3 1 -6.86670356763211 LTS-020 NA NA NA NA LTS-020 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.354 1 NA NA NA NA NA LTS-020 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0 1 NA 0.402345796879622 68 1.12694751652612 1 1 0 -5.76450902215188 LTS-020 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.225 1 NA NA NA NA NA LTS-020 chr5 140559822 153767845 13208024 * c(GNPDA1, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, FAM114A2, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, SLC36A1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, PCDHGA12, CCDC69, IL17B, GLRA1, GM2A, RELL2, SLC36A3, GPX3, GRIA1, NA NA NA NA NA NA NA NA NA LTS-020 NR3C1, ANXA6, NDST1, HTR4, ARSI, IRGM, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PCDHB11, PCDHB10, PCDHB8, NMUR2, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.363225643556653 301 0.0951436844283435 1.28586293259401 11845 0.598292667828945 5 3 2 -6.93611046865728 LTS-020 NA NA NA NA LTS-020 chr5 153767846 153855062 87217 * c(SAP30L-AS1, GALNT10, SAP30L, HAND1) 0 1 NA 1.28618105625131 193 0.285756048713023 4 4 0 -5.7690935306536 LTS-020 chr5 153855063 154397441 542379 * c(MIR3141, FAXDC2, LARP1, GEMIN5, KIF4B, MRPL22, CNOT8, HAND1) 0.31143948837641 5 0.182620371262354 1.27724551701828 716 0.348511806630511 4 3 1 -6.74987298767739 LTS-020 chr5 154397442 154397502 61 * KIF4B NA 0 NA 1.096 1 NA NA NA NA NA LTS-020 chr5 154397503 156821623 2424121 * c(PPP1R2P3, FAM71B, HAVCR1, CYFIP2, KIF4B, ITK, FNDC9, SGCD, HAVCR2, TIMD4, MED7) 0.249810235606946 18 0.183165564948782 1.20357573164492 956 0.419995301204693 4 3 1 -6.79394120649194 LTS-020 chr5 156821624 156822196 573 * CYFIP2 0.446 1 NA 1.19881623450666 13 0.273329025919781 4 4 0 -5.76441119293874 LTS-020 chr5 156822197 160067632 3245436 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, ATP10B, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, MIR146A, THG1L, ZBED8, TTC1, CCNJL, ADAM19, PTTG1, CLINT1) 0.365565962013955 41 0.0817706414606003 1.23479182645532 1861 0.37367934071437 4 2 2 -6.8260841150518 LTS-020 chr5 160067633 160071056 3424 * ATP10B NA 0 NA 1.559 1 NA NA NA NA NA LTS-020 chr5 160071057 161582582 1511526 * c(ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, LOC285629) 0.310466018325838 11 0.166123721692872 1.34819473421153 522 0.538419996554195 4 3 1 -6.78780968291334 LTS-020 chr5 162866195 170341192 7474998 * c(FAM196B, MIR103B1, MIR378E, C5orf58, NUDCD2, DOCK2, FOXI1, WWC1, GABRP, LINC01366, MAT2B, KCNIP1, HMMR, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, RANBP17, SLIT3, MIR585, PANK3, CCNG1) 0.373878587353299 54 0.187514427117911 0.93024730263392 2282 0.343448270290362 3 2 1 -6.75997334872546 LTS-020 chr5 170341193 170610273 269081 * RANBP17 0.428 1 NA 0.957695762260561 55 0.274955512777493 3 3 0 -5.76442957630621 LTS-020 chr5 170610274 172294382 1684109 * c(MIR3912, DUSP1, FBXW11, EFCAB9, SH3PXD2B, TLX3, NPM1, NEURL1B, ERGIC1, RANBP17, STK10, FGF18, UBTD2) 0.433456728776402 28 0.1271958609273 0.895876096003412 1074 0.390029946275814 3 2 1 -6.92692076800513 LTS-020 chr5 172294383 175386614 3092232 * c(LOC100268168, MIR4634, CPLX2, C5orf47, NKX2-5, CREBRF, DRD1, LOC285593, HRH2, FLJ16171, MSX2, RPL26L1, HMP19, ERGIC1, BNIP1, SNORA74B, CPEB4, THOC3, STC2, ATP6V0E1, BOD1, SFXN1) 0.468054358229492 25 0.0288956167379529 0.995881483504845 1449 0.261426656639231 4 2 2 -10.0090541768267 LTS-020 chr5 175386615 175387365 751 * THOC3 NA 0 NA 0.241276836729994 40 0.204411963057512 0 NA NA -5.76461509552509 LTS-020 chr5 175387366 175394264 6899 * THOC3 NA 0 NA 0.528230835174818 43 0.376742689728103 1 NA NA -5.76448046498524 LTS-020 chr5 175394265 175395032 768 * THOC3 NA 0 NA 1.594 1 NA NA NA NA NA LTS-020 chr5 175395033 180374817 4979785 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-020 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.431671183176562 187 0.111436915733783 0.958767310199883 7015 0.307363687288015 3 2 1 -6.9386218843606 LTS-020 NA NA NA NA LTS-020 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.929 1 NA NA NA NA NA LTS-020 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) 0.462851552509128 4 0.0450804835821445 1.70308798190332 66 0.319844331308836 6 3 3 -7.91897204226622 LTS-020 chr5 180429800 180650685 220886 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.391719696342251 14 0.166683239102803 0.95199493769835 312 0.390232843226926 3 2 1 -6.74796408003841 LTS-020 chr5 180650686 180688111 37426 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 0.966503876593982 227 0.165739132672467 3 NA NA -5.76453125252023 LTS-020 chr6 203389 312023 108635 * DUSP22 0.211 1 NA 1.14158134069419 25 0.257570812269817 4 4 0 -5.76552851361875 LTS-020 chr6 312024 5261219 4949196 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.338844309830357 69 0.107138710673632 1.28782075251362 2434 0.364039973423823 4 3 1 -6.94985652894608 LTS-020 chr6 5261220 5368721 107502 * FARS2 NA 0 NA 1.475 1 NA NA NA NA NA LTS-020 chr6 5368722 10627737 5259016 * c(SCARNA27, TFAP2A-AS1, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, FARS2, SNRNP48, DSP, PIP5K1P1, F13A1, LINC00518, GCNT2, LY86-AS1, CAGE1, SLC35B3, NRN1, RREB1, BLOC1S5, BMP6, SSR1, TFAP2A, HULC, TXNDC5, RIOK1, LY86, EEF1E1) 0.324061422584131 73 0.13438112698856 1.38965445163055 2065 0.461668796636494 5 3 2 -6.85383856228944 LTS-020 chr6 10627738 29635508 19007771 * c(TMEM170B, ZSCAN16-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, ELOVL2-AS1, LINC01012, MIR4639, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, CAP2, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, MBOAT1, HDGFL1, E2F3, EDN1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, ZSCAN23, NKAPL, TOB2P1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, GCNT2, GMPR, NA NA NA NA NA NA NA NA NA LTS-020 GPLD1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, STMND1, CASC15, ERVFRD-1, MAK, NEDD9, HCG11, GMNN, TBC1D7, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MCUR1, KIF13A, ZSCAN31, ZNF192P1, SLC17A1, SOX4, MIR548A1, BTN1A1, TPMT, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FAM65B, ZSCAN12, KIAA0319, NUP153) 0.351936521392158 286 0.0982557697793526 1.32276234102552 10722 0.534551461688978 5 3 2 -6.94525345668624 LTS-020 NA NA NA NA LTS-020 chr6 29635509 29644633 9125 * character(0) 0.45 1 NA 1.31057060991405 83 0.406169655813375 5 5 0 -5.76457640966799 LTS-020 chr6 29644634 29798154 153521 * character(0) 0.363814556001721 23 0.0934925754275656 1.22201519310297 160 0.847197172386317 3 2 1 -6.74100471774335 LTS-020 chr6 29798155 29855582 57428 * character(0) NA 0 NA 0.564 1 NA NA NA NA NA LTS-020 chr6 29855583 29910768 55186 * character(0) 0.345192825475712 8 0.0547592131843713 0.625369386592744 50 0.411743789960976 3 2 1 -6.84838575042922 LTS-020 chr6 29910769 29911023 255 * character(0) NA 0 NA 1.88 1 NA NA NA NA NA LTS-020 chr6 29911024 31239016 1327993 * character(0) 0.351950609650326 169 0.0702801076648982 1.37340542559868 3229 8.19117551801447 6 4 2 -6.73340456496944 LTS-020 chr6 31239017 31239049 33 * character(0) 0.274 1 NA 0.539 1 NA NA NA NA NA LTS-020 chr6 31239050 31324921 85872 * character(0) 0.354451734244236 31 0.107246054142016 0.834821968664983 87 0.432389049077443 3 2 1 -6.74423800379353 LTS-020 chr6 31324922 31324955 34 * character(0) NA 0 NA 1.272 1 NA NA NA NA NA LTS-020 chr6 31324956 31976523 651568 * character(0) 0.36160991240333 76 0.0438151840219483 1.32576211496531 3016 0.301670062868957 5 3 2 -6.90622609814752 LTS-020 chr6 31976524 31976572 49 * character(0) 0.305 1 NA 2.422 1 NA NA NA NA NA LTS-020 chr6 31976573 31996520 19948 * character(0) NA 0 NA 2.15179489141366 44 0.72060081924577 8 NA NA -5.76443336905067 LTS-020 chr6 31996521 32605361 608841 * c(HLA-DQA1, HLA-DRB5) 0.366348594175991 106 0.0920667947688616 1.37704801955547 1708 0.602421799922316 5 3 2 -6.7564751484767 LTS-020 chr6 32605362 32605371 10 * HLA-DQA1 0.319 1 NA 1.112 1 NA NA NA NA NA LTS-020 chr6 32605372 32627906 22535 * HLA-DQA1 0.320771234680343 27 0.0841822571665337 1.1282349770364 103 0.630982271295724 7 5 2 -6.74417053133053 LTS-020 chr6 32627907 32627923 17 * character(0) 0.402 1 NA 1.323 1 NA NA NA NA NA LTS-020 chr6 32627924 33048686 420763 * character(0) 0.43233409129809 90 0.0637001363090595 1.07910617112324 952 2.25843122211459 4 2 2 -6.95735556315237 LTS-020 chr6 33048687 33048723 37 * character(0) NA 0 NA 4.10793620611166 5 17.5421404281234 17 NA NA -5.76441013465189 LTS-020 chr6 33048724 33052693 3970 * character(0) NA 0 NA 1.74 1 NA NA NA NA NA LTS-020 chr6 33052694 33052695 2 * character(0) 0.264 1 NA 1.509 1 NA NA NA NA NA LTS-020 chr6 33052696 33054721 2026 * character(0) 0.299439115585674 48 0.086600142396653 2.21230858200287 88 15.4170928375387 14 10 4 -6.73346215136074 LTS-020 chr6 33054722 33054807 86 * character(0) 0.498 1 NA 1.3018149429587 3 0.221093494552267 5 5 0 -5.76441639965242 LTS-020 chr6 33054808 33054890 83 * character(0) 0.464498055035136 2 0.0367695526217005 1.44804870093735 4 0.812277046333331 19 10 9 -8.42315387812904 LTS-020 chr6 33054891 33054959 69 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-020 chr6 33054960 34008006 953047 * c(MIR1275, LINC01016, IP6K3, LEMD2, GRM4, ITPR3, LINC00336, MLN, GGNBP1, BAK1, UQCC2) 0.45839005988059 63 0.0380596050708155 1.00492691941061 2346 0.552030255100127 4 2 2 -8.18417630948097 LTS-020 chr6 34008007 34078463 70457 * GRM4 0.429 1 NA 1.11734737543882 45 0.172108105561592 4 4 0 -5.76875540638989 LTS-020 chr6 34078464 34393066 314603 * c(RPS10-NUDT3, NUDT3, C6orf1, GRM4, HMGA1, RPS10) 0.45 1 NA 1.01294359389975 151 0.285092105638812 3 3 0 -5.77251179201782 LTS-020 chr6 34393067 36200603 1807537 * c(RPS10-NUDT3, MIR5690, SLC26A8, CLPS, MAPK14, FANCE, ARMC12, LHFPL5, SCUBE3, FKBP5, ANKS1A, SPDEF, BRPF3, LOC285847, PACSIN1, CLPSL1, CLPSL2, RPL10A, DEF6, PPARD, UHRF1BP1, MAPK13, RPS10, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76) 0.379546930127684 16 0.0440200238527877 1.29842399650304 2415 0.278946568944418 5 3 2 -6.82844333012121 LTS-020 chr6 36200604 36238202 37599 * PNPLA1 NA 0 NA 1.844 1 NA NA NA NA NA LTS-020 chr6 36238203 41738158 5499956 * c(LOC100131047, MIR3925, MIR4641, MIR4462, CDKN1A, FRS3, APOBEC2, STK38, BTBD9, FOXP4, CCDC167, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, TSPO2, UNC5CL, KCTD20, PXT1, CMTR1, DAAM2, MTCH1, MDGA1, GLO1, GLP1R, PNPLA1, TREML4, TREML1, TREML3P, C6orf222, RAB44, LINC00951, MDFI, MOCS1, NFYA, ETV7, PPIL1, PGC, PIM1, TREM2, TREM1, TBC1D22B, SAYSD1, LRFN2, CPNE5, ZFAND3, SRSF3, NA NA NA NA NA NA NA NA NA LTS-020 TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, RNF8, NCR2) 0.431466988730675 142 0.122729087539096 1.68803981871962 4791 0.465681069757521 6 3 3 -6.80925097234828 LTS-020 NA NA NA NA LTS-020 chr6 41738159 41738247 89 * FRS3 0 1 NA 2.66641149608415 5 3.67145148408637 11 11 0 -5.76441013954987 LTS-020 chr6 41738248 42048690 310443 * c(TOMM6, FRS3, TAF8, USP49, PRICKLE4, BYSL, CCND3, MED20) 0.321935514710538 9 0.23165761373199 1.62327932785509 523 0.543629972923215 6 4 2 -6.74283802388532 LTS-020 chr6 42048691 42048843 153 * TAF8 0.451 1 NA 1.3829375478518 5 0.37884073170661 5 5 0 -5.76441031917433 LTS-020 chr6 42048844 42713368 664525 * c(TAF8, UBR2, GUCA1A, GUCA1B, ATP6V0CP3, MRPS10, TRERF1, PRPH2, C6orf132, TBCC) 0.422230825572412 31 0.139567080260616 1.61061681936961 913 0.499408075462663 6 3 3 -6.7601004108388 LTS-020 chr6 42713369 45869630 3156262 * c(LINC01512, MIR4647, MIR4642, DNPH1, CNPY3, SLC22A7, CAPN11, KLHDC3, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, GLTSCR1L, ZNF318, YIPF3, GNMT, RPL7L1, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, NFKBIE, MRPL2, PEX6, CLIC5, POLH, GTPBP2, MRPS18A, PPP2R5D, TMEM63B, AARS2, XPO5, PTK7, MRPL14, DLK2, SRF, TBCC, MIR586, VEGFA, TTBK1, SUPT3H, RUNX2, RRP36, ABCC10, KLC4, TJAP1, NA NA NA NA NA NA NA NA NA LTS-020 POLR1C, MAD2L1BP, CUL7, CDC5L) 0.364790873394546 52 0.0703521711028442 1.33960923646748 4427 0.297956494496928 5 3 2 -6.82982764605086 LTS-020 NA NA NA NA LTS-020 chr6 45869631 46113472 243842 * c(ENPP4, CLIC5) 0 1 NA 1.34447885419476 155 0.654481135018816 5 5 0 -5.76510922803047 LTS-020 chr6 46113473 46661274 547802 * c(RCAN2, TDRD6, ENPP4, CYP39A1, ENPP5, SLC25A27) 0.204607520088151 12 0.183888532606692 1.40768740253746 444 0.661504073278053 6 5 1 -6.75659065306995 LTS-020 chr6 46661275 46672943 11669 * c(TDRD6, PLA2G7) 0.339 1 NA 1.41888743906918 51 0.231919835710701 5 5 0 -5.76441981179958 LTS-020 chr6 46672944 48036412 1363469 * c(ANKRD66, OPN5, ADGRF4, ADGRF5, ADGRF2, CD2AP, ADGRF1, TNFRSF21, MEP1A, PTCHD4, PLA2G7) 0.364433244020599 22 0.0933383386103773 1.42258827130102 1042 0.393492545262856 5 3 2 -6.76103906699251 LTS-020 chr6 48036413 57512678 9476266 * c(MIR5685, MLIP-IT1, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, FAM83B, ICK, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, PTCHD4, MIR133B, MUT, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, LRRC1, PRIM2, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, CRISP2, LOC730101, GSTA7P, NA NA NA NA NA NA NA NA NA LTS-020 COL21A1, TFAP2D, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.375962760528127 130 0.137501359889193 1.00975989068873 5068 0.338144414826576 3 2 1 -6.88835557108143 LTS-020 NA NA NA NA LTS-020 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.00992989968269 19 0.136078902980063 3 NA NA -5.85814784454035 LTS-020 chr6 62390154 62407067 16914 * KHDRBS2 0.479 1 NA 1.24834982835068 23 0.382521135327621 4 4 0 -5.76462502864877 LTS-020 chr6 62407068 69723984 7316917 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, ADGRB3, PTP4A1) 0.235496236367549 11 0.233211180146781 1.01267595573717 961 0.365141477399062 3 3 0 -6.93087142088175 LTS-020 chr6 69723985 69724069 85 * ADGRB3 0.442 1 NA 1.19737061418819 3 1.03292803879715 4 4 0 -5.76441014387227 LTS-020 chr6 69724070 101304375 31580306 * c(KHDC1L, TSTD3, HMGN3-AS1, MIR2113, MIR4282, LOC100506804, MIR4464, MIR4643, KCNQ5-AS1, SYNCRIP, SLC35A1, FUT9, CGA, PNRC1, ASCC3, MRAP2, RWDD2A, KLHL32, MB21D1, CNR1, COL9A1, COL12A1, COL19A1, COX7A2, RIPPLY2, IRAK1BP1, B3GAT2, SDHAF4, CD109, PM20D2, SRSF12, KHDC3L, CFAP206, PRSS35, LCA5, EEF1A1, EPHA7, C6orf163, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, MDN1, UFL1, ORC3, MMS22L, GABRR1, GABRR2, MTO1, NA NA NA NA NA NA NA NA NA LTS-020 PNISR, IBTK, SENP6, FBXL4, SLC17A5, SNORD50A, FILIP1, NDUFAF4, HTR1B, HTR1E, DPPA5, IMPG1, GJB7, SNHG5, NA, MIR30A, MIR30C2, ME1, OOEP, MYO6, NT5E, CYB5R4, UBE2J1, COQ3, PGM3, POU3F2, PHIP, AKIRIN2, DDX43, FAM46A, TMEM30A, LMBRD1, KCNQ5, RARS2, SMIM8, LYRM2, SNX14, FAM135A, ADGRB3, RRAGD, PRDM13, BCKDHB, BACH2, SMAP1, RNY4, LINC01590, TSG1, SIM1, ELOVL4, MAP3K7, SNORD50B, TPBG, TTK, MCHR2-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 OGFRL1, MANEA, LINC00472, KHDC1, GPR63, SPACA1, SH3BGRL2, MCHR2, FAXC, GJA10, USP45, RNGTT, CCNC, LINC01621, UBE3D, TBX18, HMGN3, FHL5, SNAP91, CASP8AP2) 0.40617528692328 175 0.15275392641803 0.988822188607571 12065 0.31419874571843 3 2 1 -7.00187195603879 LTS-020 NA NA NA NA LTS-020 chr6 101304376 102517915 1213540 * c(ASCC3, GRIK2) 0.487428085178356 3 0.0111504857891185 1.1298884022395 209 0.281855261334468 4 2 2 -14.9616448932257 LTS-020 chr6 102517916 108042213 5524298 * c(LIN28B-AS1, LOC100422737, BVES, BVES-AS1, AIM1, SCML4, GRIK2, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, RTN4IP1, ATG5) 0.414310471769805 30 0.123699399268187 0.940233565684449 1608 0.225343874745568 3 2 1 -6.8408195783774 LTS-020 chr6 108042214 108093384 51171 * SCML4 0 1 NA 0.920184251180314 33 0.539113768422798 3 3 0 -5.76455426810965 LTS-020 chr6 108093385 109285451 1192067 * c(SEC63, FOXO3, LACE1, SCML4, OSTM1, LINC00222, NR2E1, ARMC2, SNX3) 0.219262838941359 11 0.22894469359929 0.922294217076698 739 0.449188528010658 3 3 0 -6.79713921557509 LTS-020 chr6 109285452 109586062 300611 * c(LOC100996634, SESN1, CEP57L1, ARMC2) 0.401 1 NA 0.909208428202654 289 0.23106410231181 3 3 0 -5.77249004407613 LTS-020 chr6 109586063 110146588 560526 * c(LOC100996634, CCDC162P, AK9, PPIL6, MICAL1, SMPD2, CD164, ZBTB24, FIG4) 0.434724201063942 27 0.0936885183015425 0.9392583272333 920 0.262284978667358 3 2 1 -7.04611548451957 LTS-020 chr6 110146589 110146670 82 * FIG4 NA 0 NA 0.792863934603411 3 0.0409918691124635 2 NA NA -5.76461501394759 LTS-020 chr6 110146671 110299949 153279 * character(0) NA 0 NA 0.705 1 NA NA NA NA NA LTS-020 chr6 110299950 110301661 1712 * GPR6 0.244 1 NA 0.69323318711818 35 0.48251347697467 2 2 0 -5.76442121087886 LTS-020 chr6 110301662 136580696 26279035 * c(TRAPPC3L, LINC00271, LOC100287632, MIR3662, SMLR1, LINC01013, MIR5695, TRDN, TRAF3IP2, HBS1L, SMPDL3A, GTF3C6, MTFR2, TMEM200A, NUS1, SLC18B1, SLC16A10, COL10A1, CLVS2, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, EPB41L2, EYA4, FABP7, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CDK19, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, FYN, TMEM244, FAM26E, NA NA NA NA NA NA NA NA NA LTS-020 MCM9, ASF1A, MOXD1, AMD1, GJA1, PDE7B, GPR6, LINC00326, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, TAAR6, HSF2, RSPH4A, C6orf58, ARG1, KPNA5, HMGA1P7, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, MYB, HDDC2, TUBE1, CDC40, RWDD1, ENPP1, ENPP3, PLN, AHI1, VNN3, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS12, LOC643623, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TRAF3IP2-AS1, CTAGE9, SGK1, ALDH8A1, MIR548B, TCF21, TPD52L1, TSPYL1, TPI1P3, METTL24, OR2A4, RNF217-AS1, FAM184A, RNF146, TAAR8, RPF2, STX7, L3MBTL3, RSPO3, DDO, SLC22A16, WISP3, VNN2, VNN1, WASF1, TAAR5, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1) 0.198313257206004 219 0.0845517310546081 0.639900377066083 11833 0.232701713740366 2 2 0 -9.65451242035227 LTS-020 NA NA NA NA LTS-020 chr6 136580697 136597262 16566 * BCLAF1 0.434 1 NA 0.604416592912961 87 0.19794722389636 1 1 0 -5.77297088277191 LTS-020 chr6 136597263 137113137 515875 * c(MAP3K5, MAP7, BCLAF1) 0.410642720452039 9 0.0932913596094396 0.672152903889172 337 0.169698499044418 2 1 1 -6.82489088522901 LTS-020 chr6 137113138 137143709 30572 * c(MAP3K5, PEX7) 0.198 1 NA 0.586495517598688 13 0.16502606631712 1 1 0 -5.78028815901269 LTS-020 chr6 137143710 167787605 30643896 * c(UST-AS1, LOC100129518, LOC100130476, C6orf99, LOC100132735, AIRN, LOC100289495, NHEG1, MIR1913, MIR3145, MIR3918, MIR3939, MIR3668, MIR3692, GVQW2, LINC01277, LOC100507557, CAHM, MIR4466, MIR4465, RAET1E-AS1, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, CITED2, PDE10A, RAB32, KATNA1, FGFR1OP, SFT2D1, GINM1, IL22RA2, TAGAP, CCR6, ADAT2, STXBP5, PACRG, RAET1E, LOC153910, ZC2HC1B, CNKSR3, RAET1L, PNLDC1, OLIG3, TXLNB, NA NA NA NA NA NA NA NA NA LTS-020 C6orf118, OSTCP1, ESR1, SCAF8, TAB2, SASH1, SYNE1, HEBP2, FUCA2, SHPRH, CCDC28A, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PHACTR2-AS1, PACRG-AS1, PRR18, MRPL18, GRM1, HIVEP2, SLC35D3, ZC3H12D, IFNGR1, ECT2L, IGF2R, NUP43, RAET1G, SUMO4, SAMD5, IYD, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, FLJ46906, LINC00602, NMBR, CLDN20, OPRM1, NOX3, PARK2, PCMT1, TFB1M, AIG1, SNX9, VTA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MPC1, HECA, PEX7, PLAGL1, PLG, IL20RA, UNC93A, MTRF1L, RMND1, AGPAT4, TULP4, HYMAI, ADGRG6, ARFGEF3, NHSL1, PLEKHG1, ARID1B, TMEM181, ZBTB2, ABRACL, PBOV1, RPS6KA2, PERP, LINC01625, RPS18P9, RAET1K, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TNFAIP3, KATNBL1P6, STXBP5-AS1, TMEM242, LOC729603, UTRN, EZR, VIP, ULBP3, EPM2A, ARMT1, ZDHHC14, ADGB, AGPAT4-IT1, CCDC170, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MYCT1, ULBP2, ULBP1, LPAL2, PPP1R14C, SF3B5, RSPH3, TTLL2, FBXO30, FNDC1, LRP11, LTV1, SERAC1, REPS1, PEX3, PPIL4, RNASET2, STX11, SYNJ2, LINC00473, LATS1, SYTL3, QKI, WTAP, AKAP12, PHACTR2) 0.198474202962248 296 0.0933155361170166 0.644397763737399 15283 0.348987792558107 2 2 0 -8.43807551998029 LTS-020 NA NA NA NA LTS-020 chr6 167787606 167789479 1874 * TCP10 0 1 NA 0.310542395966473 59 0.264060996398217 0 0 0 -5.76462112341712 LTS-020 chr6 167789480 167789493 14 * TCP10 0.238 1 NA 0.93 1 NA NA NA NA NA LTS-020 chr6 167789494 169051554 1262061 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, FRMD1) 0.217767010258291 27 0.0569725529959102 0.714184170432052 772 0.193079087439243 2 2 0 -6.86574799831886 LTS-020 chr6 169051555 169053656 2102 * SMOC2 NA 0 NA 0.621 1 NA NA NA NA NA LTS-020 chr6 169053657 170166672 1113016 * c(WDR27, C6orf120, PHF10, ERMARD, SMOC2, TCTE3, THBS2) 0.210634329041961 19 0.0582526760673349 0.634119324845606 577 0.194136101582267 2 2 0 -7.12195009713961 LTS-020 chr6 170166673 170893599 726927 * c(MIR4644, LOC154449, DLL1, LINC00242, PDCD2, ERMARD, PSMB1, TBP, LINC00574, FAM120B) NA 0 NA 0.628718789051416 461 0.134742392708156 2 NA NA -6.24804209078366 LTS-020 chr7 193047 286402 93356 * FAM20C 0.372 1 NA 0.964273865708586 71 0.140372232947603 3 3 0 -5.7646866230744 LTS-020 chr7 286403 5569327 5282925 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, MIR589, MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, NA NA NA NA NA NA NA NA NA LTS-020 PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.447416183638125 163 0.0819003311530245 0.939892638761516 5039 0.244090457777265 3 2 1 -7.29461686514118 LTS-020 NA NA NA NA LTS-020 chr7 5569328 5770330 201003 * c(RNF216-IT1, RNF216, ACTB, FSCN1) 0.395 1 NA 0.898503322760266 189 0.186598032504497 3 3 0 -5.77717951345797 LTS-020 chr7 5770331 5938049 167719 * c(ZNF815P, RNF216, OCM) NA 0 NA 0.888588269067005 86 0.321088993676932 3 NA NA -5.76944883050682 LTS-020 chr7 5938050 5952632 14583 * CCZ1 NA 0 NA 0.571887804712981 45 0.384487830651624 1 NA NA -5.76538754955272 LTS-020 chr7 5952633 5958446 5814 * CCZ1 NA 0 NA 1.089 1 NA NA NA NA NA LTS-020 chr7 5958447 6777356 818910 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, CCZ1, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.414680528387321 40 0.108579641100615 0.908060116922612 1361 0.281101119497605 3 2 1 -6.86979557227437 LTS-020 chr7 6777357 6781336 3980 * PMS2CL NA 0 NA 0.733 1 NA NA NA NA NA LTS-020 chr7 6781337 6844723 63387 * c(CCZ1B, PMS2CL, RSPH10B2) NA 0 NA 0.665599299009521 89 0.251762851613383 2 NA NA -5.7693527319603 LTS-020 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.379 1 NA NA NA NA NA LTS-020 chr7 6845571 6865853 20283 * CCZ1B 0.47610710653702 3 0.0240901086202062 1.52843486330496 39 0.556916595610991 6 3 3 -10.4032530040788 LTS-020 chr7 6865854 6865910 57 * CCZ1B NA 0 NA 0.745 1 NA NA NA NA NA LTS-020 chr7 6865911 19036738 12170828 * c(LOC100131257, ISPD-AS1, LRRC72, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, CCZ1B, THSD7A, SNX13, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, UMAD1, ISPD, SCIN, PHF14, HDAC9) 0.421217150761226 78 0.127638363282956 0.952623968973234 3315 0.291250351846745 3 2 1 -6.84609881785659 LTS-020 chr7 19036739 19735283 698545 * c(TWISTNB, FERD3L, TWIST1, HDAC9) 0 1 NA 1.03890099205027 45 0.427189860328726 3 3 0 -5.78072810502013 LTS-020 chr7 19735284 20177314 442031 * c(MIR3146, TWISTNB, TMEM196, MACC1) 0.243338189668195 9 0.24315889866505 1.04087644590346 217 0.600472440052842 4 3 1 -6.78552615917693 LTS-020 chr7 20177315 20178742 1428 * MACC1 0.441 1 NA 1.10054931329684 17 0.307868669479469 4 4 0 -5.76445483742767 LTS-020 chr7 20178743 20768013 589271 * c(MACC1-AS1, ABCB5, MACC1, ITGB8) 0.465882744071144 11 0.0282871638091138 0.98165434625265 351 0.205837936179646 4 2 2 -9.55450869030212 LTS-020 chr7 20768014 20795811 27798 * ABCB5 0 1 NA 1.06708655301955 45 0.385166116596122 4 4 0 -5.76556183957609 LTS-020 chr7 20795812 21934511 1138700 * c(SP8, RPL23P8, ABCB5, SP4, DNAH11) 0.333188825930403 9 0.231786539729985 0.931636335266373 603 0.267492300474733 3 2 1 -6.75035125279988 LTS-020 chr7 21934512 21939032 4521 * DNAH11 0.446 1 NA 1.01525337112765 7 0.221788079889232 3 3 0 -5.76461784613583 LTS-020 chr7 21939033 24329133 2390101 * c(LOC100506178, KLHL7-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, STEAP1B, RPS2P32, TRA2A, FAM221A, IL6, NPY, TOMM7, CDCA7L, KLHL7, STK31, SNORD93, FAM126A, DNAH11, CCDC126, RAPGEF5) 0.423623837373364 41 0.105914237049398 0.923494959876226 1464 0.322787315691335 3 2 1 -6.92436889622408 LTS-020 chr7 24329134 24681350 352217 * c(NPY, MPP6) 0 1 NA 1.04171444474561 25 0.949678836940854 3 3 0 -5.76618766362315 LTS-020 chr7 24681351 25174705 493355 * c(C7orf31, DFNA5, OSBPL3, MPP6, CYCS) 0.31613022134379 10 0.194677511113465 0.961683349330476 435 0.386488788837985 3 2 1 -6.7713130389381 LTS-020 chr7 25174706 25181912 7207 * C7orf31 0.433 1 NA 0.906041352719116 43 0.145975027825364 3 3 0 -5.76496779989137 LTS-020 chr7 25181913 30876359 5694447 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CBX3, C7orf31, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, C7orf71, SNX10, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, CPVL, FKBP14, NA NA NA NA NA NA NA NA NA LTS-020 NPVF, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.440767816869255 89 0.0662909768817343 0.964662778155484 3325 0.253664161060264 3 2 1 -7.42848621881413 LTS-020 NA NA NA NA LTS-020 chr7 30876360 32209459 1333100 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.441061151589308 22 0.104937468496111 1.06716026638682 978 0.337778048888271 4 2 2 -6.92881433991487 LTS-020 chr7 32209460 32338942 129483 * PDE1C NA 0 NA 1.11922020423285 21 0.223177859885019 4 NA NA -5.76887531685671 LTS-020 chr7 32338943 32524917 185975 * LOC100130673 NA 0 NA 0.909 1 NA NA NA NA NA LTS-020 chr7 32524918 32907907 382990 * c(DPY19L1P1, MIR550B2, AVL9, LSM5, KBTBD2, LINC00997, ZNRF2P1, MIR550A2) 0 1 NA 0.956301035716185 287 0.287384286327679 3 3 0 -5.76441690461686 LTS-020 chr7 32907908 33388713 480806 * c(FKBP9, AVL9, KBTBD2, BBS9, RP9P, NT5C3A, RP9) 0.361132795750987 9 0.194912444731246 0.980799420855938 343 0.646995780912025 3 2 1 -6.73381378548087 LTS-020 chr7 33388714 33392380 3667 * BBS9 0.495 1 NA 1.16222924971251 17 0.277928246664706 4 4 0 -5.76441725840915 LTS-020 chr7 33392381 36492212 3099832 * c(BMPER, DPY19L1, KIAA0895, BBS9, NPSR1, LOC401324, NPSR1-AS1, ANLN, DPY19L2P1, TBX20, HERPUD2, EEPD1, SEPT7) 0.453027172347773 43 0.0741726906608295 0.955002294119447 1176 0.260216553090111 3 2 1 -7.47164411412546 LTS-020 chr7 36492213 36492709 497 * ANLN 0 1 NA 1.05477655003617 12 1.992296229267 3 3 0 -5.76441087800209 LTS-020 chr7 36492710 37311415 818706 * c(MIR1200, AOAH-IT1, AOAH, ANLN, ELMO1) 0.273207629535339 9 0.247243862972932 0.908414722821979 306 0.623865818083933 3 2 1 -6.81843837211822 LTS-020 chr7 37311416 37903846 592431 * c(GPR141, NME8, ELMO1) 0.463 1 NA 0.862709728577674 67 0.156573074135043 3 3 0 -5.9100047463495 LTS-020 chr7 37903847 51138652 13234806 * c(DDC-AS1, C7orf72, MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, TMED4, HECW1, NACAD, COBL, NUDCD3, LINC00957, SUN3, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HUS1, FAM183BP, IGFBP1, IGFBP3, LINC00265, INHBA, VWC2, RASA4CP, C7orf65, TARP, OGDH, NME8, NA NA NA NA NA NA NA NA NA LTS-020 UBE2D4, PGAM2, POLD2, DDX56, EPDR1, PPIA, URGCP, COA1, PSMA2, YAE1D1, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.413535381885801 191 0.125699885776003 0.979731466525985 7613 0.369400907495622 3 2 1 -6.85814817920141 LTS-020 NA NA NA NA LTS-020 chr7 51138653 51139123 471 * COBL 0 1 NA 1.24523597243066 13 1.25261206059936 4 4 0 -5.76441064272145 LTS-020 chr7 51139124 54619468 3480345 * c(VSTM2A, COBL, POM121L12, HPVC1, LINC01446) 0.28225410146612 9 0.229521664433762 1.06407750014834 272 0.535537015473701 4 3 1 -6.81779306841146 LTS-020 chr7 54619469 54619599 131 * VSTM2A 0.496 1 NA 1.25551417238845 3 0.257519578543716 4 4 0 -5.76441456715183 LTS-020 chr7 54619600 56174140 1554541 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, SUMF2, GBAS, VSTM2A-OT1, SEPT14, ZNF713, FKBP9P1, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, SNORA15, VOPP1, CCT6A) 0.436836919881896 42 0.103231258827309 0.999568394225167 1246 0.271194717693907 3 2 1 -7.03393949641876 LTS-020 chr7 56174141 57533232 1359092 * c(LOC100130849, MIR3147, DKFZp434L192, NUPR2, ZNF716, CHCHD2, PSPH, GUSBP10, LOC650226, ZNF479) NA 0 NA 1.03942767693047 141 0.343767604578219 3 NA NA -5.81375455441552 LTS-020 chr7 62758725 63023528 264804 * ZNF733P 0.289 1 NA 0.806223548684504 7 0.589092764948175 2 2 0 -5.76906534746629 LTS-020 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.437866580055354 18 0.0879863328662005 1.00064529291738 605 0.325664461293645 4 2 2 -7.12782105789647 LTS-020 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.672 1 NA NA NA NA NA LTS-020 chr7 64643340 65159972 516633 * c(ZNF92, LOC441242, INTS4P2) 0.474720668725856 5 0.0174499283666151 0.624238318575555 99 0.251165296946921 2 1 1 -11.9193859190345 LTS-020 chr7 65159973 65159983 11 * c(LOC441242, INTS4P2) 0.365 1 NA 1.916 1 NA NA NA NA NA LTS-020 chr7 65159984 82073151 16913168 * c(POM121C, PMS2P9, LOC100133091, MIR548M, MIR4284, MIR3914-1, MIR3914-2, APTR, MAGI2-AS3, MIR4651, MIR4650-1, MIR4650-2, MIR548AU, MAGI2-AS2, CCL26, SEMA3C, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, GNAI1, LINC00174, GTF2I, GTF2IP1, GUSB, HGF, HIP1, HSPB1, GNAT3, NA NA NA NA NA NA NA NA NA LTS-020 TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, ASL, LOC441242, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, CACNA2D1, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, CD36, GTF2IRD1, MAGI2, POM121) 0.409058389136609 168 0.130940285589891 1.01039163111631 6859 0.322498772529641 3 2 1 -7.09615559358243 LTS-020 NA NA NA NA LTS-020 chr7 82073152 82387472 314321 * PCLO NA 0 NA 1.121 1 NA NA NA NA NA LTS-020 chr7 82387473 84627076 2239604 * c(SEMA3A, SEMA3D, PCLO, SEMA3E) 0.367193592323609 21 0.154302130960812 1.21137376402982 841 0.390767130381833 4 2 2 -6.7551173654369 LTS-020 chr7 84627077 90893972 6266896 * c(LOC101409256, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, SEMA3D, STEAP2, STEAP1, GRM3, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, CFAP69, FZD1, GTPBP10, CLDN12, DMTF1) 0.415379581510394 59 0.121377547590276 1.08520229306322 2793 0.335317473477115 4 2 2 -6.9831210287274 LTS-020 chr7 90893973 90894471 499 * FZD1 0 1 NA 1.21956695860956 5 0.439784833753962 4 4 0 -5.76441175034566 LTS-020 chr7 90894472 93054214 2159743 * c(AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, GATAD1, MTERF1, CALCR, FZD1, RBM48, NA, KRIT1) 0.180376837408952 10 0.219089048359591 1.02688863824285 2069 0.317933570411091 3 3 0 -6.81440742325376 LTS-020 chr7 93054215 93520037 465823 * c(MIR4652, GNGT1, MIR489, MIR653, TFPI2, CALCR) 0.429 1 NA 1.03459899507274 169 0.176083252806309 3 3 0 -5.82191759963592 LTS-020 chr7 93520038 99699436 6179399 * c(GS1-259H13.2, MIR3609, LOC100506136, ATP5J2-PTCD1, CYP3A7-CYP3A51P, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, COPS6, PDAP1, COL1A2, CYP3A7, CYP3A4, CYP3A5, BHLHA15, DLX5, DLX6, DYNC1I1, ZSCAN25, FAM200A, TMEM130, LMTK2, PEG10, ZKSCAN5, BRI3, TECPR1, PTCD1, GNG11, GNGT1, DLX6-AS1, ZNF789, GJC3, MGC72080, C7orf76, KPNA7, MIR106B, MIR25, MIR93, MCM7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, NA NA NA NA NA NA NA NA NA LTS-020 BAIAP2L1, AZGP1, SDHAF3, SMURF1, AZGP1P1, CYP3A43, CASD1, TAC1, MIR591, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, SHFM1, TFPI2, OR2AE1, TRRAP, ZNF394, MYH16, BUD31, SGCE, TRIM4, AP4M1, ATP5J2) 0.33946719387539 56 0.199242471219523 1.07355667989174 5221 0.31629448546153 4 3 1 -7.06718319783347 LTS-020 NA NA NA NA LTS-020 chr7 99699437 99752566 53130 * c(CNPY4, MBLAC1, LAMTOR4, C7orf43, TAF6, AP4M1) 0.448 1 NA 1.06022017081356 241 0.195153466315456 3 3 0 -5.77357482268553 LTS-020 chr7 99752567 100488658 736092 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, EPHB4, EPO, PPP1R35, GPC2, NYAP1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, C7orf61, UFSP1, LRCH4, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, MEPCE, SLC12A9, MOSPD3, GIGYF1, TFR2, TRIP6, ZAN, PVRIG, GAL3ST4, TSC22D4) 0.455217180685494 52 0.0348517383376837 1.06986078728565 2458 0.263655327147319 4 2 2 -8.28546479483463 LTS-020 chr7 100488659 100547278 58620 * ACHE 0.234 1 NA 1.10763201828415 53 0.134967353468078 4 4 0 -5.77229148978748 LTS-020 chr7 100547279 100549499 2221 * character(0) 0.235331668887916 3 0.0321299444962691 1.01961319197397 7 0.352892807143095 10 8 2 -6.7428325907827 LTS-020 chr7 100549500 100549573 74 * character(0) 0.287 1 NA 1.509 1 NA NA NA NA NA LTS-020 chr7 100549574 100550747 1174 * character(0) 0.371928068268709 27 0.083572238741816 1.59011553883111 55 0.564226315722278 8 5 3 -6.73321962572352 LTS-020 chr7 100550748 100550766 19 * character(0) 0.23 1 NA 0.218 1 NA NA NA NA NA LTS-020 chr7 100550767 100551253 487 * character(0) 0.26358333415992 12 0.0926414970177888 0.606886456505876 45 0.389448467824575 5 4 1 -6.73533526121017 LTS-020 chr7 100551254 100551282 29 * character(0) NA 0 NA 1.407 1 NA NA NA NA NA LTS-020 chr7 100551283 100552739 1457 * character(0) 0.316083679836871 54 0.0964168915757611 1.48794149136032 88 0.488750264640335 7 5 2 -6.73326909508898 LTS-020 chr7 100552740 100552788 49 * character(0) 0.387 1 NA 1.399 1 NA NA NA NA NA LTS-020 chr7 100552789 100553092 304 * character(0) 0.409001814092831 8 0.0261082909655699 1.42234883713551 17 0.534377379595665 19 10 9 -6.95162222274733 LTS-020 chr7 100553093 100554932 1840 * character(0) NA 0 NA 0.905 1 NA NA NA NA NA LTS-020 chr7 100554933 102739650 2184718 * c(RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MUC12, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, FBXL13, CLDN15, POLR2J2, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10) 0.389813785478836 91 0.122038234365836 1.09866579732432 2472 0.37949725814767 4 2 2 -6.78025533220252 LTS-020 chr7 102739651 102739903 253 * ARMC10 NA 0 NA 0.905 1 NA NA NA NA NA LTS-020 chr7 102739904 121081041 18341138 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, TSPAN12, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, KCND2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NRCAM, ORC5, PNPLA8, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, PUS7, NA NA NA NA NA NA NA NA NA LTS-020 ING3, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, WNT2, ST7, CBLL1, CPED1, CAPZA2, ARMC10, IMMP2L, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, FOXP2, PMPCB, DOCK4) 0.403788096630977 153 0.136502752895272 1.03083939616555 8056 0.423156379293953 3 2 1 -7.12077998205175 LTS-020 NA NA NA NA LTS-020 chr7 121081042 135069549 13988508 * c(LOC100130705, SMKR1, RNA5SP244, AASS, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, ASB15, FEZF1-AS1, IQUB, C7orf77, MGC27345, RNF133, ZNF800, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, HYAL4, POT1, HYALP1, COPG2, SND1, SND1-IT1, TPI1P2, FLJ40288, GPR37, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, AGBL3, FAM71F2, STRA8, IMPDH1, IRF5, KCP, LINC-PINT, RNF148, ARF5, FEZF1, LEP, PRRT4, LINC01000, MIR129-1, NA NA NA NA NA NA NA NA NA LTS-020 MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, CNOT4, NRF1, PAX4, TAS2R16, CPA4, ZC3HC1, PODXL, CHCHD3, RBM28, TMEM140, METTL2B, AKR1B10, STRIP2, PTPRZ1, EXOC4, OPN1SW, LRRC4, NA, CCDC136, SLC13A1, SMO, SPAM1, BPGM, MIR592, MIR593, TMEM229A, UBE2H, C7orf49, GCC1, CALD1, CALU, FAM71F1, SLC35B4, TMEM209, WASL, PLXNA4, ATP6V1F, CADPS2, CPA5, CEP41) 0.409911958011896 193 0.119861709679626 1.08605223226136 7911 0.401652414376 4 2 2 -7.08866607720962 LTS-020 NA NA NA NA LTS-020 chr7 135069550 135070938 1389 * CNOT4 NA 0 NA 1.74 1 NA NA NA NA NA LTS-020 chr7 135070939 135344996 274058 * c(NUP205, CNOT4) 0.305184743156184 8 0.0336279539329155 1.56630612762259 328 0.396263231490523 7 5 2 -6.81557901706277 LTS-020 chr7 135344997 135662146 317150 * c(SLC13A4, FAM180A, C7orf73, LUZP6) NA 0 NA 1.61374343382877 259 0.381304837886968 6 NA NA -5.76458775378414 LTS-020 chr7 136587866 137128830 540965 * c(CHRM2, LOC349160, MIR490, PTN, DGKI) 0.153 1 NA 1.24996170690948 247 0.306971038522888 4 4 0 -5.77556336684031 LTS-020 chr7 137128831 141765379 4636549 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, KIAA1549, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, TTC26, KDM7A, SLC37A3, TRIM24, MGAM, ADCK2, DGKI, ZC3HAV1L NA NA NA NA NA NA NA NA NA LTS-020 ) 0.09797892147679 74 0.0483418117821707 1.16437369219105 4369 0.357448039771669 4 4 0 -6.84630278886147 LTS-020 NA NA NA NA LTS-020 chr7 141765380 141765555 176 * MGAM NA 0 NA 0.007 1 NA NA NA NA NA LTS-020 chr7 141765556 141794410 28855 * MGAM NA 0 NA 0.0637743601783519 97 0.0375992615267102 0 NA NA -12.6126272285036 LTS-020 chr7 141794411 141794586 176 * MGAM NA 0 NA 1.112 1 NA NA NA NA NA LTS-020 chr7 141794587 141920985 126399 * c(MGAM, MGAM2) 0.0344364253004789 4 0.047 1.21442875274168 338 0.72064521581964 13 13 0 -6.89489859532296 LTS-020 chr7 141920986 142008484 87499 * c(MOXD2P, PRSS58, NA) 0.33 1 NA 1.21821265438138 51 0.252295090219805 4 4 0 -5.76521433720237 LTS-020 chr7 142008485 142168474 159990 * character(0) 0.28252418209658 33 0.127962892644467 1.37576253795466 180 0.934123960886175 5 4 1 -6.75177743286084 LTS-020 chr7 142168475 142180849 12375 * character(0) 0.044 1 NA 1.319992946564 23 0.434158779537858 5 5 0 -5.76456957406358 LTS-020 chr7 142180850 142423289 242440 * MTRNR2L6 0.173131755369695 26 0.108456648553164 1.39953273392756 157 0.939384520609116 8 7 1 -6.75962755950295 LTS-020 chr7 142423290 142458371 35082 * PRSS1 0.409 1 NA 1.36732057534917 47 0.393928193750634 5 5 0 -5.76451951501 LTS-020 chr7 142458372 142495123 36752 * c(PRSS3P2, PRSS1) 0.39205985802686 8 0.0959545093111463 2.37481342014511 74 6.99254203976616 9 5 4 -6.73303654982478 LTS-020 chr7 142495124 142498897 3774 * character(0) 0.402080194359959 6 0.0689620668677112 1.19373629892859 16 0.423319087686818 4 2 2 -6.74415493855231 LTS-020 chr7 142498898 142499836 939 * character(0) 0.212 1 NA 1.07840268052274 11 0.734162441772317 4 4 0 -5.76441871985741 LTS-020 chr7 142499837 143305429 805593 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.116878852219594 41 0.0308499911056634 1.15058727869301 1352 0.322063274698167 4 4 0 -6.73841445633717 LTS-020 chr7 143305430 143321183 15754 * TCAF2 NA 0 NA 0.325589233151185 43 0.326018798417167 0 NA NA -5.76673537633977 LTS-020 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.341 1 NA NA NA NA NA LTS-020 chr7 143400289 143556264 155976 * c(LOC154761, TCAF2, CTAGE6, TCAF1) NA 0 NA 1.50926961410052 87 0.474754874496365 5 NA NA -5.76646583516764 LTS-020 chr7 143556265 143573043 16779 * TCAF1 NA 0 NA 0.672 1 NA NA NA NA NA LTS-020 chr7 143573044 149321678 5748635 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, OR2A14, OR6B1, OR2F2, ZNF786, ZNF425, LOC155060, ZNF746, C7orf33, EZH2, CNTNAP2, OR2F1, TPK1, ZNF777, OR2A12, OR2A25, OR2A5, OR2A7, OR2A2, ARHGEF35, ZNF398, ARHGEF34P, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, PDIA4, TCAF1) 0.111908422923805 57 0.0483472389468567 1.17894964395128 2104 1.65936789595646 4 4 0 -6.74510887741834 LTS-020 chr7 149321679 149416399 94721 * c(ZNF767P, KRBA1) NA 0 NA 2.046 1 NA NA NA NA NA LTS-020 chr7 149416400 149430919 14520 * KRBA1 0.054 1 NA 2.40437539372836 109 0.528886641456091 9 9 0 -5.76445953594893 LTS-020 chr7 149430920 157449189 8018270 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, DNAJB6, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, ASB10, RNF32, GIMAP8, CRYGN, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, SSPO, AOC1, GIMAP2, GBX1, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, NA NA NA NA NA NA NA NA NA LTS-020 MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, TMUB1, KRBA1, ASIC3, UBE3C) 0.123275128921155 157 0.0638691967512267 1.18295085306076 6913 0.355436327723741 4 4 0 -6.73613885369254 LTS-020 NA NA NA NA LTS-020 chr7 157449190 157462197 13008 * PTPRN2 NA 0 NA 0.691 1 NA NA NA NA NA LTS-020 chr7 157462198 158334230 872033 * c(LOC100506585, PTPRN2, MIR595) 0.151139914867917 6 0.112033328374492 0.790422307995073 92 0.563198293326877 3 3 0 -6.79233834442232 LTS-020 chr7 158334231 158433732 99502 * c(MIR5707, NCAPG2, PTPRN2) 0.235 1 NA 0.707384595575969 63 0.155891605047615 2 2 0 -5.76660720166655 LTS-020 chr7 158433733 158930788 497056 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) 0.229610494724986 56 0.0683017345903598 0.673245886308616 663 0.257280738387562 2 2 0 -6.94192335646124 LTS-020 chr7 158930789 159025951 95163 * VIPR2 NA 0 NA 0.712078599888547 19 0.161170335958521 2 NA NA -5.76560295508568 LTS-020 chr8 182757 250576 67820 * ZNF596 0 1 NA 0.611100231970403 73 0.387818996208793 2 2 0 -5.77280030696756 LTS-020 chr8 250577 7366781 7116205 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, CLN8, DEFB107A, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.206420011607519 80 0.092652146511371 0.667642332842096 2279 0.277960372335752 2 2 0 -7.14620631834166 LTS-020 chr8 7366782 7398443 31662 * DEFB107A NA 0 NA 0.345 1 NA NA NA NA NA LTS-020 chr8 7398444 7752350 353907 * c(DEFB4A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) NA 0 NA 0.315659386012536 63 0.214309133043574 0 NA NA -5.8424399904257 LTS-020 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.599 1 NA NA NA NA NA LTS-020 chr8 8175295 22105568 13930274 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, LPL, MIR124-1, MIR320A, NA NA NA NA NA NA NA NA NA LTS-020 ASAH1, MSR1, MSRA, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, SFTPC, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MFHAS1, RP1L1, PHYHIP) 0.197315491530598 186 0.0904305702002172 0.663854338725767 7125 0.23284551682275 2 2 0 -7.84704068422853 LTS-020 NA NA NA NA LTS-020 chr8 22105569 39142479 17036911 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, NKX2-6, UNC5D, LETM2, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, RHOBTB2, DDHD2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADGRA2, LSM1, NA NA NA NA NA NA NA NA NA LTS-020 ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, C8orf86, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, PLEKHA2, LINC00589, MBOAT4, PDLIM2, EBF2, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RNF122, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, STMN4, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, ASH2L, CHMP7, BAG4, ENTPD4) 0.206522622371962 275 0.080608701518206 0.641338830806114 11698 0.406971916400727 2 2 0 -7.62420054808673 LTS-020 NA NA NA NA LTS-020 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.094 1 NA NA NA NA NA LTS-020 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.0898444095822395 55 0.00676144745725142 0 NA NA -21.8280204253487 LTS-020 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.64 1 NA NA NA NA NA LTS-020 chr8 39442068 43211994 3769927 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, POTEA, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.173928534026972 50 0.0934976066484035 0.641344222702543 2943 0.199431909620559 2 2 0 -7.56484352866126 LTS-020 chr8 43211995 43212050 56 * POTEA NA 0 NA 0.618874078680262 3 0.018475208614068 2 NA NA -5.76699613923538 LTS-020 chr8 47752736 47759712 6977 * LINC00293 0.432 1 NA 1.05367824459261 23 0.358870637399261 3 3 0 -5.76472562916438 LTS-020 chr8 47759713 64048465 16288753 * c(LOC100130298, SBF1P1, LOC100287846, LINC00968, LINC01606, MIR4470, LYPLA1, CEBPD, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CLVS1, CYP7A1, SDR16C5, SPIDR, LINC00588, SNORD54, NPBWR1, LOC286177, NKAIN3, MRPL15, FAM150A, LYN, MCM4, MOS, ASPH, C8orf22, LINC00293, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, CHD7, PRKDC, RAB2A, RP1, RPS20, SDCBP, SOX17, UG0898H09, SNAI2, TCEA1, TTPA, UBE2V2, CA8, CHCHD7, EFCAB1, NA NA NA NA NA NA NA NA NA LTS-020 NSMAF, RGS20, GGH, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.405815545731485 89 0.140452349070959 0.987968834355723 5479 0.295073200226908 3 2 1 -6.91035704184952 LTS-020 NA NA NA NA LTS-020 chr8 64048466 64048574 109 * character(0) NA 0 NA 1.38 1 NA NA NA NA NA LTS-020 chr8 64048575 66514965 2466391 * c(MIR124-2HG, YTHDF3-AS1, YTHDF3, BHLHE22, LINC01289, LINC01299, LOC401463, MIR124-2, ARMC1, LINC00251, CYP7B1) 0.402274126410546 2 0.0197989898732233 1.37660217397965 276 0.352613839605627 4 2 2 -7.13862722413804 LTS-020 chr8 66514966 66515783 818 * ARMC1 0.287 1 NA 1.24613542827491 23 0.337461167433664 4 4 0 -5.76442263577297 LTS-020 chr8 66515784 100904183 34388400 * c(MIR875, C8orf88, STAU2-AS1, TCF24, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, NCOA2, ARFGEF1, POP1, COPS5, WWP1, STMN2, SLC26A7, OSR2, C8orf34, COX6C, FAM92A1, NDUFAF6, ADHFE1, DCAF4L2, RALYL, NA NA NA NA NA NA NA NA NA LTS-020 CRH, RDH10, C8orf37, VPS13B, SLC7A13, MCMDC2, SBSPON, DECR1, CNBD1, TMEM64, E2F5, ERICH5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, LY96, SGK3, ATP6V0D2, C8orf46, REXO1L1P, RAD54B, KIAA1429, PTTG3P, GEM, SNORA72, STAU2, TRIQK, DPY19L4, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MYBL1, NBN, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, PDE7A, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, ARMC1, UBE2W, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, C8orf44, JPH1, CPA6, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, SNHG6, SNORD87, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ZFHX4, NIPAL2, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, TRIM55, LRRCC1, TSPYL5, DNAJC5B, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, TP53INP1, MTFR1, PTDSS1) 0.296181879866302 256 0.145556731610167 1.34404877223631 14261 0.45301791718153 5 4 1 -6.97185882128263 LTS-020 NA NA NA NA LTS-020 chr8 100904184 104075433 3171250 * c(MIR4471, MIR5680, COX6C, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.248025713354777 25 0.155360355303404 1.24426978916279 1779 0.460419820639373 4 3 1 -6.84274806690062 LTS-020 chr8 104075434 104076940 1507 * ATP6V1C1 NA 0 NA 1.391 1 NA NA NA NA NA LTS-020 chr8 104076941 104892576 815636 * c(MIR3151, BAALC-AS1, CTHRC1, BAALC-AS2, DCAF13, ATP6V1C1, BAALC, SLC25A32, FZD6, RIMS2) 0.308494127994322 23 0.110035531451519 1.39323898195194 557 5.28476105799574 4 3 1 -6.73362288058479 LTS-020 chr8 104892577 104934028 41452 * RIMS2 0.371 1 NA 1.50909302544874 63 0.474227661099573 5 5 0 -5.76495597909963 LTS-020 chr8 104934029 120743721 15809693 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, ABRA, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TAF2, TRHR, TRPS1, DCSTAMP, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.325949721835596 70 0.131436279817157 1.4011714602705 3998 0.442895889227175 5 3 2 -6.85016847264292 LTS-020 chr8 120743722 120743734 13 * TAF2 NA 0 NA 1.122 1 NA NA NA NA NA LTS-020 chr8 120743735 131373887 10630153 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, FER1L6-AS1, MYC, NDUFB9, ASAP1, FAM49B, POU5F1B, TRMT12, WDYHV1, GSDMC, PVT1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, CASC8, LINC00977, COL14A1, NA NA NA NA NA NA NA NA NA LTS-020 DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.351812396166253 70 0.103283508992548 1.30773888227418 3874 0.358012201951139 5 3 2 -7.04596853651549 LTS-020 NA NA NA NA LTS-020 chr8 131373888 131797737 423850 * c(ADCY8, ASAP1) 0 1 NA 1.40743328081118 31 1.6746170899192 5 5 0 -5.76441015890944 LTS-020 chr8 131797738 133906211 2108474 * c(HHLA1, ADCY8, TMEM71, EFR3A, LRRC6, KCNQ3, PHF20L1, TG, OC90, HPYR1) 0.242532908400115 28 0.155556498013018 1.34418498199829 1167 0.463043586955161 5 4 1 -6.75267151984341 LTS-020 chr8 133906212 133920411 14200 * TG 0.346 1 NA 1.25005822445601 30 0.293243002679842 4 4 0 -5.7647323829007 LTS-020 chr8 133920412 135545251 1624840 * c(NDRG1, ZFAT, ST3GAL1, SLA, TG, WISP1) 0.338525009738205 30 0.0533105087654168 1.3004617606152 709 0.305601029270232 4 3 1 -7.03185388449144 LTS-020 chr8 135545252 135577262 32011 * ZFAT NA 0 NA 1.503 1 NA NA NA NA NA LTS-020 chr8 135577263 139736933 4159671 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, ZFAT, ZFAT-AS1) 0.311069245335063 35 0.0903006369967389 1.48162541123863 662 0.802190755539314 6 4 2 -6.88755102966369 LTS-020 chr8 139736934 139768085 31152 * COL22A1 0.408 1 NA 1.621325752001 31 0.325878105715843 6 6 0 -5.76441866564927 LTS-020 chr8 139768086 145747628 5979543 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, WDR97, TMEM249, SPATC1, MROH5, MAFA, NA NA NA NA NA NA NA NA NA LTS-020 LY6E, LY6H, TONSL, CYHR1, VPS28, HGH1, KCNK9, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.364314062933611 285 0.0562481799392556 1.35637449932187 7499 0.331435409608161 5 3 2 -6.85165935304764 LTS-020 NA NA NA NA LTS-020 chr8 145747629 145750453 2825 * c(LRRC24, LRRC14) 0 1 NA 1.39253553412407 54 0.280449280159779 5 5 0 -5.76441234282882 LTS-020 chr8 145750454 146200876 450423 * c(ZNF252P, COMMD5, ZNF517, C8orf82, LRRC24, ZNF250, RPL8, ZNF7, ZNF16, ARHGAP39, ZNF34, ZNF251, LRRC14) 0.159634630005855 9 0.182406140247526 1.36161488177697 816 0.468135966464079 4 4 0 -6.78792968946934 LTS-020 chr8 146200877 146280905 80029 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) NA 0 NA 1.30379194761505 215 0.225708336300231 5 NA NA -5.76984551104311 LTS-020 chr9 14732 271638 256907 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0.471 1 NA 0.950583309618247 67 0.289311211212967 3 3 0 -5.76444639124366 LTS-020 chr9 271639 34725299 34453661 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, SNORD121B, RCL1, TOPORS, SIGMAR1, CDKN2A, CDKN2B, DMRT2, RRAGA, CCL27, PSIP1, INSL6, PTENP1, DCTN3, UHRF2, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FAM219A, KDM4C, MLANA, KANK1, DDX58, NA NA NA NA NA NA NA NA NA LTS-020 SLC24A2, DCAF12, GALT, FAM205A, B4GALT1, RANBP6, DNAI1, SPINK4, GLDC, TUSC1, LURAP1L, CD274, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, CNTFR-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, MOB3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, C9orf24, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.421373097888633 291 0.110626231625202 0.993401169273969 13099 0.298196304762791 3 2 1 -7.22725977695342 LTS-020 NA NA NA NA LTS-020 chr9 34725300 34726284 985 * FAM205A NA 0 NA 0.465352318696588 46 0.431236622560841 1 NA NA -5.76442926585861 LTS-020 chr9 34726285 43816026 9089742 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, FAM205A, ZNF658, SPAG8, FBXO10, SIT1, LOC286297, STOML2, IGFBPL1, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, AQP7P3, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, NA, LOC642929, NA NA NA NA NA NA NA NA NA LTS-020 LINC01189, POLR1E, SHB, HRCT1, NA, FGF7P3, MSMP, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.415648770990082 77 0.120774845171697 0.988106669557855 5056 0.340174662704176 3 2 1 -6.8900181889755 LTS-020 NA NA NA NA LTS-020 chr9 43816027 43816599 573 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.837 1 NA NA NA NA NA LTS-020 chr9 43816600 43818062 1463 * c(LOC286297, LINC01189, CNTNAP3B) 0.411856063235252 2 0.0586898628384835 1.45300923100539 6 0.274023174202475 6 3 3 -6.79655731210203 LTS-020 chr9 43818063 44175697 357635 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.86306308226276 33 1.04365902252749 7 NA NA -5.764411267613 LTS-020 chr9 65602571 66457127 854557 * LOC286297 0.398 1 NA 0.956163250921175 4 0.342952377646421 3 3 0 -5.76441887266452 LTS-020 chr9 66457128 69002317 2545190 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.311658557914569 27 0.0812899912539218 1.05598673907655 68 0.787223301166773 4 3 1 -6.76559402783061 LTS-020 chr9 69002318 70971798 1969481 * c(LOC100133920, FOXD4L3, LOC440896, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.4 1 NA 0.867695672065392 16 0.270758925676206 3 3 0 -5.90843547934336 LTS-020 chr9 70971799 77362916 6391118 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, C9orf57, C9orf85, C9orf135, TRPM6, TMEM252, ALDH1A1, SMC5, TMEM2, FXN, MAMDC2, ANXA1, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PGM5, PRKACG, PGM5-AS1, RORB, KLF9, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.415234933865467 72 0.135905822559719 1.00591988218838 2734 0.290553085502981 3 2 1 -6.93368547507358 LTS-020 chr9 77362917 79318402 1955486 * c(CARNMT1, TRPM6, PRUNE2, GCNT1, OSTF1, PCSK5, NMRK1, C9orf40, RFK, RPSAP9) 0.430085343821825 34 0.0851333074398653 0.924301896150731 1155 0.234014463896649 3 2 1 -7.08338202593615 LTS-020 chr9 79318403 79471995 153593 * c(PRUNE2, PCA3) 0.424 1 NA 0.904607367731173 183 0.15418531373317 3 3 0 -5.77569756884478 LTS-020 chr9 79471996 79954405 482410 * c(VPS13A-AS1, PRUNE2, VPS13A, FOXB2) 0.257334177315809 9 0.229828801018884 0.940049671467385 284 0.287210763607141 3 2 1 -6.86367744504833 LTS-020 chr9 79954406 79954545 140 * VPS13A 0.425 1 NA 1.26325501048848 6 0.59078918970024 4 4 0 -5.76441122448492 LTS-020 chr9 79954546 96870198 16915653 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, CTSL, CTSLP8, NXNL2, RASEF, FAM120AOS, LINC00475, DAPK1, ECM2, S1PR3, SUSD3, FAM120A, VPS13A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, GNAQ, C9orf47, SPATA31E1, LOC286238, MIR4290HG, PSAT1, UBQLN1, HNRNPK, IARS, LINC01501, NA NA NA NA NA NA NA NA NA LTS-020 SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIR7-1, IDNK, LOC440173, SPATA31C1, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, TLE1, TLE4, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, FGD3, GNA14) 0.432054589756883 186 0.101278518610218 0.94815557692504 7780 0.281151800746956 3 2 1 -6.98856634131233 LTS-020 NA NA NA NA LTS-020 chr9 96870199 96871979 1781 * PTPDC1 0 1 NA 1.08333540237372 35 0.508698616425228 4 4 0 -5.76444073844764 LTS-020 chr9 96871980 99691283 2819304 * c(LINC00476, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, PTPDC1, MIRLET7DHG, ZNF782, LOC158434, LOC158435, ZNF169, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, HSD17B3, ERCC6L2, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, LOC441454, LOC441455, NUTM2F, PTCH1, MFSD14B, C9orf3, CDC14B, FBP2) 0.294697634244727 16 0.191590611721973 0.931710249475327 1928 1.52448247321432 4 3 1 -6.77606482675644 LTS-020 chr9 99691284 100190780 499497 * c(CCDC180, LOC100499484, CTSV, TDRD7, LOC286359, GAS2L1P2, NUTM2G, LOC100499484-C9ORF174, MFSD14C) 0.434 1 NA 0.98202622972626 441 0.268477109562624 3 3 0 -5.76769261677368 LTS-020 chr9 100190781 101832442 1641662 * c(ANP32B, COL15A1, TSTD2, ANKS6, FOXE1, TDRD7, NCBP1, TRMO, NANS, TBC1D2, HEMGN, TMOD1, CORO2A, XPA, GALNT12, GABBR2, TRIM14) 0.417853088492105 45 0.118361840356279 0.928666622398068 1790 0.290475689948777 3 2 1 -6.85760828429193 LTS-020 chr9 101832443 101911891 79449 * c(COL15A1, TGFBR1) 0 1 NA 0.92512193764498 73 0.531756733614434 3 3 0 -5.76457833309874 LTS-020 chr9 101911892 112963104 11051213 * c(MIR548Q, MSANTD3-TMEFF1, NAMA, SMC2, ACTL7B, ACTL7A, SEC61B, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, FKTN, ALDOB, ERP44, SLC44A1, TMEM245, FRRS1L, NIPSNAP3A, INVS, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, STX17-AS1, PALM2-AKAP2, MRPL50, EPB41L4B, TEX10, PLPPR1, FAM206A, STX17, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TGFBR1, NA NA NA NA NA NA NA NA NA LTS-020 ZNF189, NR4A3, FSD1L, TMEM246, IKBKAP, ALG2, TMEFF1, CTNNAL1, MSANTD3, KLF4) 0.357871720245568 84 0.188409179534529 0.962824601525899 5214 1.21518670573877 3 2 1 -6.73430029241901 LTS-020 NA NA NA NA LTS-020 chr9 112963105 112963504 400 * C9orf152 0.491 1 NA 1.18282524394392 7 0.273213853096452 4 4 0 -5.76441014446472 LTS-020 chr9 112963505 117074810 4111306 * c(FAM225B, MIR3134, MIR4668, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, TXNDC8, C9orf43, AMBP, OR2K2, GNG10, FAM225A, C9orf152, SNX30, MUSK, POLE3, BSPRY, DNAJC25, DNAJC25-GNG10, SLC46A2, INIP, RGS3, MIR455, SUSD1, LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.424791644897981 90 0.119616919228815 0.94261537606803 4495 0.27537927457222 3 2 1 -6.88280245486505 LTS-020 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.262 1 NA NA NA NA NA LTS-020 chr9 117085363 117089956 4594 * ORM1 0.435369613163695 3 0.108512672071054 0.30199402682547 42 0.224495449255331 0 0 0 -6.82361053414712 LTS-020 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 1.155 1 NA NA NA NA NA LTS-020 chr9 117092173 120478202 3386030 * c(SNORA70C, ASTN2-AS1, LOC100505478, TMEM268, TRIM32, ASTN2, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.419949654449648 47 0.0985703024893399 0.982509340237799 1549 0.280078940218902 3 2 1 -6.93250631046187 LTS-020 chr9 120478203 120478287 85 * TLR4 NA 0 NA 0.87 1 NA NA NA NA NA LTS-020 chr9 120478288 123232527 2754240 * c(BRINP1, MIR147A, CDK5RAP2, TLR4) 0.468467435091426 3 0.052624455658309 0.901530657511169 255 0.181224828782476 3 2 1 -8.60274412123135 LTS-020 chr9 123232528 123280937 48410 * CDK5RAP2 0.48 1 NA 0.798723893516565 29 0.287598319020554 2 2 0 -5.76735059059625 LTS-020 chr9 123280938 123860689 579752 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, CDK5RAP2, PSMD5, TRAF1, C5) 0.156518562160234 9 0.213327473877865 0.877399916072462 821 0.441789490040219 3 3 0 -6.74704312968498 LTS-020 chr9 123860690 123914306 53617 * CNTRL 0.493 1 NA 0.889830806376552 107 0.200882836370252 3 3 0 -5.76836766606802 LTS-020 chr9 123914307 126146225 2231919 * c(MIR4478, ZBTB6, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, STOM, RABGAP1, MORN5, OR1L4, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GPR21, CRB2, GSN, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, NDUFA8, PDCL, RAB14, RC3H2, STRBP, PTGS1, ZBTB26, DENND1A, SNORD90, MIR600HG, MRRF, RBM18) 0.404549920992422 32 0.134755689179081 0.908378553504656 2719 0.279789597353354 3 2 1 -6.82547401523122 LTS-020 chr9 126146226 126149985 3760 * DENND1A NA 0 NA 1.44 1 NA NA NA NA NA LTS-020 chr9 126149986 126176965 26980 * c(DENND1A, MIR601) NA 0 NA 1.25863271843652 77 0.170722401617999 4 NA NA -5.76667486954793 LTS-020 chr9 126176966 126201618 24653 * DENND1A NA 0 NA 0.786 1 NA NA NA NA NA LTS-020 chr9 126201619 141071755 14870137 * c(LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, NA NA NA NA NA NA NA NA NA LTS-020 CELP, POMT1, NEK6, SDCCAG3, NOXA1, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, ABCA2, ENDOG, ENG, AK1, NAIF1, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 NCS1, ANGPTL2, NUP188, FPGS, ABL1, NR5A1, FUT7, PHYHD1, CIZ1, NELFB, NSMF, GPSM1, DKFZP434A062, GAPVD1, GBGT1, NR6A1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 QRFP, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, ODF2, PAEP, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, TOR4A, EXD3, PTPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PPP6C, RABL6, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, DOLPP1, PTGDS, KCNT1, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, CACNA1B, C9orf16, MAPKAP1, EHMT1, PTGES2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 BRD3, NUP214, LHX3, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, LHX2, TMEM203, MED27, PTGES, ENTPD2, RALGPS1, ADAMTSL2, PPP1R26, SEC16A) 0.421692233062132 537 0.0934529192830053 0.8974852746426 22341 0.412019179216615 3 2 1 -7.13822691934165 LTS-020 NA NA NA NA LTS-020 chr9 141071756 141071759 4 * TUBBP5 NA 0 NA 1.147 1 NA NA NA NA NA LTS-020 chr10 94832 300500 205669 * c(ZMYND11, TUBB8) 0 1 NA 1.56482982194953 137 0.489015290537588 6 6 0 -5.76533896575014 LTS-020 chr10 300501 1064792 764292 * c(MIR5699, ZMYND11, DIP2C, LARP4B, GTPBP4, PRR26) 0.363734565002812 9 0.203454608642266 1.58780847223741 647 0.393272165403278 6 4 2 -6.73748110562399 LTS-020 chr10 1064793 1070710 5918 * c(IDI2-AS1, IDI2) 0.486 1 NA 1.49702155137123 33 0.39144508883847 5 5 0 -5.76449984917366 LTS-020 chr10 1070711 12391652 11320942 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, NET1, ADARB2, PITRM1, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, WDR37, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, GATA3-AS1, PRKCQ-AS1, CELF2-AS2, ATP5C1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, SEC61A2, DHTKD1, IDI2-AS1, NA NA NA NA NA NA NA NA NA LTS-020 PRKCQ, CAMK1D, SFMBT2, ADARB2-AS1, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, TAF3, FBXO18, RBM17, AKR1C3, CDC123, IDI2, USP6NL) 0.438839833891433 139 0.0786091382845084 1.56074876015587 4670 0.519048591812661 6 3 3 -6.98379824736195 LTS-020 NA NA NA NA LTS-020 chr10 12391653 12391801 149 * CAMK1D NA 0 NA 1.291 1 NA NA NA NA NA LTS-020 chr10 12391802 12875285 483484 * c(MIR4480, NA, CAMK1D) 0.430533969165979 11 0.0514083473943501 1.27389421605745 165 0.305386324332472 4 2 2 -7.05973893648395 LTS-020 chr10 12875286 12875451 166 * NA 0.343 1 NA 1.69012986917058 5 0.385697160995515 6 6 0 -5.76441093130636 LTS-020 chr10 12875452 17813397 4937946 * c(ST8SIA6-AS1, PPIAP30, MIR1265, OPTN, RPP38, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, NA, ST8SIA6, C1QL3, ACBD7, CDNF, HSPA14, PHYH, OLAH, MCM10, FRMD4A, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, HACD1, PTER, NMT2) 0.34196794387934 72 0.124770530376332 1.2106987970799 3161 0.36916714398351 4 3 1 -6.79344058477085 LTS-020 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.099 1 NA NA NA NA NA LTS-020 chr10 17842448 17898391 55944 * c(MRC1, NA, TMEM236) NA 0 NA 0.327919070231588 39 0.243512615817083 0 NA NA -5.78050799813749 LTS-020 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 2.214 1 NA NA NA NA NA LTS-020 chr10 17905571 18196475 290905 * c(MRC1, NA, TMEM236) 0.421675038611827 2 0.037476659402887 1.06794980764983 105 0.638441373043122 4 2 2 -7.07653642306698 LTS-020 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.481 1 NA NA NA NA NA LTS-020 chr10 18198201 27459670 9261470 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, YME1L1, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, EBLN1, C10orf113, SKIDA1, LINC00202-1, CASC10, MRC1, PIP4K2A, MYO3A, APBB1IP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, LINC00264, BMI1, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, NA NA NA NA NA NA NA NA NA LTS-020 MASTL, SPAG6) 0.341018240980525 108 0.123012687999214 1.26817589663386 4245 0.415347076989497 4 3 1 -6.9385927466794 LTS-020 NA NA NA NA LTS-020 chr10 27459671 27475444 15774 * MASTL 0.438 1 NA 1.2097792294733 25 0.183395519756254 4 4 0 -5.76457602412492 LTS-020 chr10 27475445 28233933 758489 * c(RAB18, MKX, PTCHD3, LRRC37A6P, ARMC4, MASTL, ACBD5) 0.193708718806391 9 0.177066920808051 1.28477204335164 479 0.380485695878246 5 4 1 -6.84146264097959 LTS-020 chr10 28233934 28341714 107781 * c(MPP7, ARMC4) 0.426 1 NA 1.3681248075299 73 0.297863576231909 5 5 0 -5.76497376951881 LTS-020 chr10 28341715 30305208 1963494 * c(MIR938, LINC00837, MIR5586, MPP7, WAC-AS1, BAMBI, PTCHD3P1, WAC, KIAA1462, SVIL, MIR604, LYZL1) 0.391131784088932 20 0.0847346322039391 1.26612843901722 682 0.331817422943785 4 2 2 -6.78492382962105 LTS-020 chr10 30305209 30305222 14 * KIAA1462 0.375 1 NA 0.665 1 NA NA NA NA NA LTS-020 chr10 30305223 34399636 4094414 * c(LINC00838, LYZL2, MAP3K8, ZNF438, ZEB1-AS1, NA, ITGB1, KIF5B, MTPAP, PARD3, KIAA1462, ZEB1, CCDC7, EPC1, NRP1, ARHGAP12) 0.351084083564422 48 0.11251817032143 1.19961447767774 1558 0.915533903117665 4 2 2 -6.81466968989563 LTS-020 chr10 34399637 38740353 4340717 * c(LOC100129055, MTRNR2L7, ZNF33BP1, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, SEPT7P9, LINC00999, PARD3, ZNF248, ZNF33A, ZNF37A, FZD8, CUL2, ANKRD30A) 0.437542140183514 22 0.141273283718616 0.965069937923403 1288 0.224388659843878 3 2 1 -6.89146569293609 LTS-020 chr10 38740354 38740384 31 * LINC00999 NA 0 NA 0.964 2 0 0 NA NA -Inf LTS-020 chr10 42379883 46148326 3768444 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.434657139133832 55 0.112348238078426 0.983108354722692 1775 0.370114879064814 3 2 1 -6.96685612744408 LTS-020 chr10 46148327 46659737 511411 * c(AGAP4, FAM21C, PTPN20, NA, ZFAND4) 0 1 NA 1.3941757368716 41 1.47173962975958 5 5 0 -5.76442147489841 LTS-020 chr10 46659738 47000547 340810 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15, GPRIN2) 0.280599673002196 28 0.0642498739010147 1.00558001490956 168 0.375629390272663 4 3 1 -6.86966751394389 LTS-020 chr10 47000548 47087078 86531 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, GPRIN2) 0.423 1 NA 1.01686940111333 11 0.261682771170119 3 3 0 -5.76741505196655 LTS-020 chr10 47087079 47701299 614221 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.469005464735855 2 0.0268700576850888 1.10423697709268 116 0.430613982354383 4 2 2 -9.62419876921089 LTS-020 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 0.657 1 NA NA NA NA NA LTS-020 chr10 47755982 48025640 269659 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.43862652744795 4 0.0610157083599516 0.526956913915287 42 0.411229535814972 2 1 1 -7.154301704793 LTS-020 chr10 48025641 48438836 413196 * c(ZNF488, CTSLP2, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.228567851328687 3 0.25593032906112 1.05960246341243 281 0.394958336884964 4 3 1 -6.80740130716204 LTS-020 chr10 48438837 48438935 99 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.868 1 NA NA NA NA NA LTS-020 chr10 48438936 49364771 925836 * c(FRMPD2, PTPN20, GDF10, NA, GLUD1P7, NA, NA, NA, FRMPD2B) 0.462 1 NA 0.299787691313795 38 0.337825711332861 0 0 0 -5.79476668213165 LTS-020 chr10 49364772 49367164 2393 * c(FRMPD2, NA, FRMPD2B) NA 0 NA 1.966 1 NA NA NA NA NA LTS-020 chr10 49367165 50534599 1167435 * c(MIR4294, FAM170B-AS1, C10orf71, FRMPD2, FAM170B, C10orf128, VSTM4, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, FRMPD2B) 0.452549070740052 35 0.085173160249522 0.998962866034603 1151 0.277671725722148 4 2 2 -7.25949636291596 LTS-020 chr10 50534600 50664556 129957 * c(C10orf71, ERCC6, NA, DRGX) 0 1 NA 0.983721253398317 127 0.303542691979676 3 3 0 -5.76516305846223 LTS-020 chr10 50664557 51065522 400966 * c(NA, CHAT, ERCC6, C10orf53, NA, OGDHL, SLC18A3, PARG) 0.387439574106989 10 0.195922433631272 0.975639689700443 641 0.276688475933691 3 2 1 -6.7420783153219 LTS-020 chr10 51065523 51124012 58490 * c(NA, PARG) NA 0 NA 0.922 1 NA NA NA NA NA LTS-020 chr10 51124013 51540236 416224 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.516501016446496 40 0.417471313308948 1 NA NA -5.76542805518426 LTS-020 chr10 51540237 63169472 11629236 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.402029027363859 75 0.151590625824415 1.03000960760299 3105 0.312062087868695 3 2 1 -7.15374222705662 LTS-020 chr10 63169473 64414530 1245058 * c(MIR548AV, C10orf107, TMEM26, RTKN2, ZNF365, ARID5B) 0.288796434450591 11 0.213962825998095 0.925183474187705 657 0.36511929434946 3 2 1 -6.81452407223807 LTS-020 chr10 64414531 64415184 654 * ZNF365 0.479 1 NA 0.828796357300206 9 0.224985431627127 2 2 0 -5.76453791863953 LTS-020 chr10 64415185 71174736 6759552 * c(MIR1296, DNA2, EGR2, STOX1, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.422090528094383 67 0.125271251597114 0.948782533019866 3096 0.299152330297451 3 2 1 -6.85528866514079 LTS-020 chr10 71174737 73476067 2301331 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SAR1A, CDH23, NPFFR1, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.447133695023617 50 0.0954104452417265 0.999744425869981 2194 0.255007008431996 3 2 1 -7.18848578427696 LTS-020 chr10 73476068 73476158 91 * c(C10orf105, CDH23) NA 0 NA 0.581 1 NA NA NA NA NA LTS-020 chr10 73476159 74594137 1117979 * c(MIR1256, MIR4676, MICU1, ANAPC16, C10orf105, ASCC1, DDIT4, DNAJB12, PSAP, CDH23, C10orf54, MCU, CHST3, SPOCK2) 0.447744762081224 34 0.0429541894184002 0.915177153272004 1132 0.206897480504966 2 1 1 -8.30413445659208 LTS-020 chr10 74594138 74646703 52566 * MCU 0 1 NA 0.988235302806705 55 0.34046851557965 3 3 0 -5.76473223271688 LTS-020 chr10 74646704 75559665 912962 * c(ECD, CHCHD1, MSS51, CFAP70, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, NUDT13, GLUD1P3, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1, AGAP5, BMS1P4, SYNPO2L, PLA2G12B, MCU, SEC24C) 0.234390315791619 11 0.203575181555745 0.91729073235611 1737 0.219236409351219 3 3 0 -6.86087503940768 LTS-020 chr10 75559666 75607168 47503 * c(ZSWIM8, CAMK2G, NDST2) 0.449 1 NA 0.926813928374888 215 0.219661362539175 3 3 0 -5.76493323585015 LTS-020 chr10 75607169 92503476 16896308 * c(DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, BMS1P21, FAS-AS1, GRID1-AS1, MIR4679-1, MIR4679-2, MIR4678, PPIF, NRG3, ADIRF, POLR3A, LDB3, COMTD1, ANKRD22, AGAP11, ADK, SAMD8, LIPJ, CFL1P1, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, KAT6B, IFIT5, ZNF503-AS1, LRIT1, AP3M1, GHITM, GLUD1, FLJ37201, ZMIZ1-AS1, GRID1, ANXA11, HTR7, DUPD1, LIPM, LRIT2, IFIT2, IFIT1, IFIT3, FAS, KCNMA1, SH2D4B, NA NA NA NA NA NA NA NA NA LTS-020 C10orf99, SLC16A12, LIPA, MIR107, C10orf55, LINC00595, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, DUSP13, PLAU, PANK1, CCSER2, FAM35A, RNLS, ZMIZ1, PTEN, STAMBPL1, ACTA2, RGR, RPS24, LOC642361, FAM25A, LIPK, LIPN, LINC00865, SFTPD, BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, VCL, VDAC2, MMRN2, TMEM254, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, ZNF503, ATAD1, MBL1P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 LIPF, CH25H, PAPSS2, CDHR1, DLG5, OPN4, MINPP1, KIF20B) 0.416636080906016 179 0.114397237792539 0.943710582902059 7212 0.269615286049758 3 2 1 -6.87006019789844 LTS-020 NA NA NA NA LTS-020 chr10 92503477 92631506 128030 * c(RPP30, HTR7) 0 1 NA 0.983852696839743 41 0.493042676132406 3 3 0 -5.76469382812729 LTS-020 chr10 92631507 94819193 2187687 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CPEB3, ANKRD1, HHEX, IDE, KIF11, EXOC6, MARCH5, PPP1R3C, TNKS2, PCGF5, BTAF1) 0.340450107995082 26 0.172644182775308 0.942412404372274 1852 0.36166522354045 3 2 1 -6.74724477086859 LTS-020 chr10 94819194 94820860 1667 * EXOC6 0.487 1 NA 0.95314686821303 5 0.165469634676577 3 3 0 -5.76441024567745 LTS-020 chr10 94820861 97175926 2355066 * c(PLCE1-AS1, SORBS1, FRA10AC1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, TBC1D12, MYOF, PIPSL, HELLS, FFAR4, CYP26C1, PLCE1, PDE6C, CEP55, RBP4, NOC3L, PDLIM1, LGI1) 0.434475721157402 51 0.0969946066824862 0.91671961576932 2269 0.20999311075452 3 2 1 -7.07554334810615 LTS-020 chr10 97175927 97626646 450720 * c(SORBS1, TCTN3, ALDH18A1, ENTPD1-AS1, ENTPD1) 0 1 NA 0.861964222338584 319 0.320722549329464 3 3 0 -5.79179799062706 LTS-020 chr10 97626647 98319393 692747 * c(C10orf131, MIR3157, DNTT, BLNK, CC2D2B, CCNJ, TM9SF3, TLL2, ENTPD1-AS1, OPALIN, ENTPD1, ZNF518A) 0.264423499983138 12 0.225751052885225 0.907150370692855 956 0.299671825824252 3 2 1 -6.86283474130223 LTS-020 chr10 98319394 98353213 33820 * c(PIK3AP1, TM9SF3) 0.435 1 NA 0.868682437195954 31 0.198113023025931 3 3 0 -5.76902691720921 LTS-020 chr10 98353214 102584597 4231384 * c(DNMBP-AS1, FRAT1, MIR1287, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ERLIN1, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, ABCC2, COX15, CPN1, NKX2-3, RRP12, DNMBP, FRAT2, SEC31B, C10orf12, ANKRD2, CNNM1, R3HCC1L, GOT1, BLOC1S2, HPS1, GOLGA7B, C10orf62, NDUFB8, PAX2, EXOSC1, CUTC, PGAM1, CRTAC1, CWF19L1, PI4K2A, HIF1AN, ENTPD7, AVPI1, HPSE2, SCD, MMS19, SFRP5, SLIT1, SNORA12, WNT8B, UBTD1, SLC25A28, NA NA NA NA NA NA NA NA NA LTS-020 MARVELD1, LOXL4, ZDHHC16, LCOR, PYROXD2, ARHGAP19, OLMALINC, PKD2L1) 0.434657056643272 155 0.0836178752264982 0.925936634967975 4756 0.247218841354272 3 2 1 -7.15769493624317 LTS-020 NA NA NA NA LTS-020 chr10 102584598 102587574 2977 * PAX2 0.311 1 NA 1.11448860836018 17 0.381128018094276 4 4 0 -5.76445114640825 LTS-020 chr10 102587575 117278894 14691320 * c(TLX1NB, MIR936, KCNIP2-AS1, MIR1307, MIR2110, MIR3158-1, MIR4295, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4680, MIR4483, MIR4482, ACTR1A, SMNDC1, NPM3, LBX1, MGEA5, SORCS1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CYP17A1, CFAP58, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, CALHM1, DPCD, ATRNL1, PDCD4, POLL, RBM20, PDCD4-AS1, HABP2, KCNIP2, NA NA NA NA NA NA NA NA NA LTS-020 TLX1, VWA2, NHLRC2, GUCY2GP, ABLIM1, LBX1-AS1, ARL3, MXI1, NFKB2, NRAP, PAX2, CALHM2, SUFU, ACSL5, PITX3, CNNM2, WBP1L, CCDC186, SLF2, TDRD1, PSD, C10orf2, AS3MT, MIR146B, GPAM, FAM160B1, SEMA4G, ZDHHC6, RPL13AP6, FBXW4, TAF5, MIR608, MIR609, TCF7L2, TECTB, RPEL1, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, CFAP43, SHOC2, TRIM8, KAZALD1, SFXN3, ELOVL3, CASP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PCGF6, LZTS2, MRPL43, AFAP1L2, USMG5, ITPRIP, GBF1, LDB1, BTRC, INA, SMC3, NEURL1, NOLC1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.36207430723322 144 0.182445161583521 0.921086655228032 10254 0.276642519929076 3 2 1 -6.87858043978613 LTS-020 NA NA NA NA LTS-020 chr10 117278895 117308950 30056 * ATRNL1 NA 0 NA 1.097 1 NA NA NA NA NA LTS-020 chr10 117308951 119134964 1826014 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.34752090145469 33 0.188716884512224 1.0129041027393 1377 0.353300403992813 3 2 1 -6.76887344281314 LTS-020 chr10 119134965 119309471 174507 * c(EMX2OS, EMX2) NA 0 NA 0.967160377953569 73 0.199271452727545 3 NA NA -5.76484559027335 LTS-020 chr10 119309472 119764469 454998 * RAB11FIP2 NA 0 NA 0.581 1 NA NA NA NA NA LTS-020 chr10 119764470 119767880 3411 * RAB11FIP2 0.253 1 NA 0.640250303921285 73 0.0817017141272091 2 2 0 -5.76955600326642 LTS-020 chr10 119767881 122263189 2495309 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.205277009453003 22 0.0705538540431798 0.610594027257217 1528 0.150820986166671 2 2 0 -8.32582981108141 LTS-020 chr10 122263190 122263266 77 * PLPP4 NA 0 NA 0.689 1 NA NA NA NA NA LTS-020 chr10 122263267 125449851 3186585 * c(MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, DMBT1, PLPP4, FAM24B, FGFR2, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, WDR11, HTRA1, PLEKHA1, IKZF5, C10orf88, BUB3) 0.163992781142195 37 0.0957992066146061 0.666131762971888 2083 0.203529777204366 2 2 0 -7.13463471667 LTS-020 chr10 125449852 125450857 1006 * GPR26 0.291 1 NA 0.625471729103201 21 0.0770710556502739 2 2 0 -5.76678495048238 LTS-020 chr10 125450858 127585090 2134233 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CPXM2, CTBP2, FAM175B, EDRF1, LOC283038, GPR26, TEX36, NKX1-2, METTL10, FLJ37035, OAT, CHST15, ZRANB1, DHX32, BCCIP, LHPP, UROS, FAM53B) 0.300157186232453 30 0.0823853365482045 0.663806608121292 1506 0.179221798666681 2 1 1 -7.73756123849745 LTS-020 chr10 127585091 127585097 7 * character(0) 0.108 1 NA 0.082 1 NA NA NA NA NA LTS-020 chr10 127585098 134693137 7108040 * c(MIR378C, MIR4297, LINC00601, FANK1-AS1, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2, FANK1) 0.209964677402462 105 0.0788858450976888 0.658080367892533 2801 0.253710529769254 2 2 0 -7.38774384204304 LTS-020 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.386 1 NA NA NA NA NA LTS-020 chr10 134694406 134884610 190205 * c(LINC01168, CFAP46, ADGRA1) 0.206881328077948 15 0.0745430524372773 0.347069387923306 183 0.15060985156509 1 1 0 -7.82774991084864 LTS-020 chr10 134884611 134884685 75 * ADGRA1 NA 0 NA 0.576 1 NA NA NA NA NA LTS-020 chr10 134884686 135473026 588341 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.174869405767607 17 0.0931652153592808 0.654527387254427 1376 0.221584377877945 2 2 0 -6.83429363403154 LTS-020 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.958 1 NA NA NA NA NA LTS-020 chr11 193025 193112 88 * SCGB1C1 0.388 1 NA 0.317 1 NA NA NA NA NA LTS-020 chr11 193113 1013987 820875 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.423711161808454 120 0.0938653600234129 0.881001013039372 2975 0.321101969579783 2 1 1 -6.96482948655722 LTS-020 chr11 1013988 1016869 2882 * MUC6 0.357 1 NA 0.806370776184129 23 0.13724954912559 2 2 0 -5.76534714725097 LTS-020 chr11 1016870 1018523 1654 * MUC6 0.328513669488717 34 0.0974338113468979 0.742210891316394 72 0.163646798465131 4 3 1 -6.77016289827578 LTS-020 chr11 1018524 1025332 6809 * MUC6 NA 0 NA 0.758136869184434 50 0.14425390880001 2 NA NA -5.76471450685987 LTS-020 chr11 1025333 1028379 3047 * MUC6 0.449 1 NA 0.928573235456599 39 0.175272419543497 3 3 0 -5.76445632233292 LTS-020 chr11 1028380 1255773 227394 * c(MUC2, MUC6, MUC5B) 0.392074043922992 41 0.0703219339199649 0.932981289872436 618 0.20375310671821 3 2 1 -6.81991788123158 LTS-020 chr11 1255774 1258175 2402 * MUC5B 0.299 1 NA 0.872339268997827 19 0.140935491858854 3 3 0 -5.76500192354858 LTS-020 chr11 1258176 1260217 2042 * MUC5B 0.232468542570493 13 0.117506410081563 0.875582329112323 19 0.154845291589655 6 5 1 -6.75546947279189 LTS-020 chr11 1260218 1267325 7108 * MUC5B 0.415 1 NA 0.948710679986611 71 0.158807358338253 3 3 0 -5.76441707972387 LTS-020 chr11 1267326 3681115 2413790 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TSSC2, SNORA54, TH, TNNI2, TNNT3, TRPC2, NA NA NA NA NA NA NA NA NA LTS-020 INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.446319524755497 107 0.0580757384353891 0.93108156455866 2719 0.213110847293234 3 2 1 -7.73743284464557 LTS-020 NA NA NA NA LTS-020 chr11 3681116 3681519 404 * ART1 0.479 1 NA 0.999253288092273 9 0.170633378915147 3 3 0 -5.76442732410499 LTS-020 chr11 3681520 6976988 3295469 * c(LOC100506082, MIR4687, TRIM22, TRIM3, PRKCDBP, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, TPP1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, OR52A1, ARFIP2, OR52B2, OR51F1, TIMM10B, PGAP2, OR51B5, OR51V1, OR10A4, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, APBB1, HPX, OR52L1, OR2AG2, NA NA NA NA NA NA NA NA NA LTS-020 OR52B6, OR10A2, ILK, OR56B1, GVINP1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, RHOG, OR51T1, OR51A4, OR51A2, ART1, TRIM6-TRIM34, NUP98, UBQLN3, TRIM34, TRIM68, MMP26, CHRNA10, RRM1, MRPL17, SMPD1, TRIM21, STIM1, TAF10, ZNF215, OR51G1, OR51B4, OR51B2, OR52N1, OR51G2, OR51E2, FAM160A2, TRIM5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 OR6A2, DCHS1, CCKBR) 0.452968275973949 234 0.0798431893693432 0.963795510886856 5362 0.323698306429982 3 2 1 -7.38145342622432 LTS-020 NA NA NA NA LTS-020 chr11 6976989 6978301 1313 * ZNF215 0 1 NA 0.999063100075322 27 1.28753025467177 3 3 0 -5.76441110933452 LTS-020 chr11 6978302 7675036 696735 * c(SYT9, RBMXL2, OLFML1, NLRP14, ZNF214, ZNF215, PPFIBP2) 0.373624831822689 11 0.222701349140707 0.979342199762641 561 0.297952813524372 3 2 1 -6.73687760621946 LTS-020 chr11 7675037 7686339 11303 * c(CYB5R2, PPFIBP2) 0.453 1 NA 0.921629303361445 15 0.144322654394342 3 3 0 -5.76481739609678 LTS-020 chr11 7686340 7870760 184421 * c(OR5P2, OR5P3, OR5E1P, OVCH2, CYB5R2) 0.469944578910558 22 0.0288388566638772 1.02206006220489 244 0.548093357814883 4 2 2 -9.4112044302663 LTS-020 chr11 7870761 8017080 146320 * c(OR5E1P, OR10A3, LOC283299, NLRP10, OR10A6, EIF3F) 0 1 NA 0.986489132344745 149 0.478920344382422 3 3 0 -5.76481787229763 LTS-020 chr11 8017081 8636350 619270 * c(LMO1, STK33, TUB, RIC3, EIF3F, TRIM66) 0.297571562435642 11 0.212098090514743 0.992991841463646 638 0.417215686558282 3 2 1 -6.79704641138515 LTS-020 chr11 8636351 8637191 841 * TRIM66 0.444 1 NA 1.06945729656744 11 0.595646280026234 4 4 0 -5.7644240588288 LTS-020 chr11 8637192 8751889 114698 * c(RPL27A, SNORA3A, ST5, SNORA3B, TRIM66) 0.462801101639365 13 0.0274359393721223 0.96760715102259 437 0.287107518491658 4 2 2 -9.27296903098467 LTS-020 chr11 8751890 9003349 251460 * c(TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, ST5) 0 1 NA 0.933715193625354 263 0.414855943369003 3 3 0 -5.76484767081191 LTS-020 chr11 9003350 11678189 2674840 * c(MRVI1-AS1, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, TMEM41B, LOC440028, RNF141, NRIP3, SCUBE2, ZBED5, LOC644656, SNORA23, SNORD97, ZBED5-AS1, WEE1, ZNF143, SBF2, CTR9) 0.310945517780806 34 0.213797464005009 0.935513163122086 2257 0.390307566856383 3 2 1 -6.77608662862647 LTS-020 chr11 11678190 11863080 184891 * c(MIR4299, USP47) 0.459 1 NA 0.810089719567708 7 0.215018382381379 2 2 0 -5.79107852740217 LTS-020 chr11 11863081 12958851 1095771 * c(DKK3, USP47, PARVA, TEAD1, MICALCL, MICAL2) 0.456561992755589 14 0.0313674605669248 0.955985904412721 726 0.335051050209955 4 2 2 -8.79553859114262 LTS-020 chr11 12958852 12960291 1440 * TEAD1 0 1 NA 1.11543253730867 33 1.06736434894983 4 4 0 -5.76441258953143 LTS-020 chr11 12960292 16872816 3912525 * c(LINC00958, SPON1, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, INSC, ARNTL, PDE3B, SOX6, PSMA1, PTH, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10) 0.294296452346085 26 0.207394210289339 0.961484224856726 1658 0.356791894962112 3 2 1 -6.80362574098362 LTS-020 chr11 16872817 17096059 223243 * c(OR7E14P, PLEKHA7, RPS13) 0.453 1 NA 1.04131627707298 45 0.128311202342058 3 3 0 -5.82498939638809 LTS-020 chr11 17096060 19596865 2500806 * c(SPTY2D1-AS1, SAA2-SAA4, MIR4486, USH1C, NAV2-AS5, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, LDHA, LDHC, NAV2-AS4, MYOD1, NUCB2, LOC494141, PIK3C2A, ZDHHC13, UEVLD, RPS13, SAA1, SAA2, SAA3P, SAA4, ABCC8, TPH1, TSG101, E2F8, CSRP3, PTPN5, NAV2) 0.420494861963102 66 0.1308580362111 0.969396325013421 3345 0.477037473764387 3 2 1 -6.83907479470452 LTS-020 chr11 19596866 19596870 5 * c(MIR4486, NAV2) NA 0 NA 1.395 1 NA NA NA NA NA LTS-020 chr11 19596871 27679916 8083046 * c(LOC100126784, CCDC179, MIR4486, MIR4694, LINC00678, PRMT3, HTATIP2, DBX1, MUC15, SLC5A12, ANO5, FANCF, SVIP, GAS2, LUZP2, FIBIN, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, BBOX1, NAV2, CCDC34, SLC6A5) 0.441263936880871 70 0.100519179180009 1.04544281394629 2529 0.279551319602241 3 2 1 -7.52801301877567 LTS-020 chr11 27679917 28090821 410905 * c(BDNF-AS, BDNF, MIR610, KIF18A) 0 1 NA 1.03074847367169 127 0.310774423066387 3 3 0 -5.7793228746365 LTS-020 chr11 28090822 30947064 2856243 * c(DCDC5, ARL14EP, METTL15, FSHB, KCNA4, MPPED2, KIF18A) 0.357898665516067 13 0.199574740192934 1.06280469150709 628 0.356997589446583 3 2 1 -6.88442877022802 LTS-020 chr11 30947065 33055078 2108014 * c(DCDC5, EIF3M, DNAJC24, IMMP1L, ELP4, DCDC1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, RCN1, WT1, PRRG4, QSER1, DEPDC7) 0.34952832207035 18 0.196825094048139 0.990007396860299 1416 0.295875775389737 3 2 1 -6.75580014508762 LTS-020 chr11 33055079 33055206 128 * DEPDC7 0.488 1 NA 1.03083213525328 3 0.108794914096815 3 3 0 -5.76444791726433 LTS-020 chr11 33055207 47446857 14391651 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, NA NA NA NA NA NA NA NA NA LTS-020 CAPRIN1, MDK, MYBPC3, APIP, HSD17B12, PHF21A, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.439876927624499 174 0.100266428846868 0.989324456078893 7718 0.295535812243879 3 2 1 -7.16921751187739 LTS-020 NA NA NA NA LTS-020 chr11 47446858 47857253 410396 * c(CELF1, C1QTNF4, PTPMT1, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN, AGBL2) 0.383812062115677 18 0.126109455518775 0.914105280393712 876 0.283458400739459 3 2 1 -6.7516084590151 LTS-020 chr11 47857254 48153436 296183 * c(NUP160, PTPRJ) 0 1 NA 0.880765624120491 113 0.376573937374501 3 3 0 -5.77256460278968 LTS-020 chr11 48153437 48346419 192983 * c(OR4X2, OR4B1, OR4S1, OR4X1, PTPRJ) 0 1 NA 0.954967890019648 211 0.252521095601465 3 3 0 -5.76441018398535 LTS-020 chr11 48346420 48346423 4 * character(0) 0.362 1 NA 2.9 1 NA NA NA NA NA LTS-020 chr11 48346424 48346962 539 * OR4C3 0.282254335596658 19 0.10063761634976 2.00292503023069 31 1.140761599966 8 6 2 -6.73308316091658 LTS-020 chr11 48346963 48346999 37 * OR4C3 0.375 1 NA 3.712 1 NA NA NA NA NA LTS-020 chr11 48347000 48387983 40984 * c(OR4C3, OR4C45) 0.344108577192824 72 0.0493147229679783 1.7067954943991 143 1.02714497288914 9 6 3 -6.73547414437293 LTS-020 chr11 48387984 48387985 2 * character(0) NA 0 NA 1.005 1 NA NA NA NA NA LTS-020 chr11 48387986 49145005 757020 * c(TRIM49B, OR4A47, TRIM64C) 0.349392184310848 8 0.14133439324625 0.997597877379235 112 0.419941228095906 3 2 1 -6.74565894256825 LTS-020 chr11 49145006 51527703 2382698 * c(OR4C46, FOLH1, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 1.0011312783589 349 0.347459990643026 3 NA NA -5.7908680917821 LTS-020 chr11 55035776 55035862 87 * TRIM48 0.495 1 NA 0.796463540312366 5 0.217868079350785 2 2 0 -5.76441868661936 LTS-020 chr11 55035863 55340582 304720 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) NA 0 NA 0.973269067932043 87 0.143287840514263 3 NA NA -5.76767322229175 LTS-020 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.094 1 NA NA NA NA NA LTS-020 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.0900807165811621 67 0.0054156915588924 0 NA NA -23.8843848797334 LTS-020 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.104 1 NA NA NA NA NA LTS-020 chr11 55432533 56467945 1035413 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, TRIM51) 0.410472050042644 102 0.101746310911598 1.1511351778693 942 0.694940512824743 4 2 2 -6.75214790026916 LTS-020 chr11 56467946 56468020 75 * c(OR8U8, OR9G9) 0.324 1 NA 1.017887701737 3 0.185354615085067 3 3 0 -5.7644154234317 LTS-020 chr11 56468021 56468828 808 * c(OR8U8, OR9G9) 0.285062216540865 24 0.141104333636549 1.73928736460093 39 0.938314010439061 8 6 2 -6.73315219485077 LTS-020 chr11 56468829 56508619 39791 * OR8U8 0.47 1 NA 0.980672983119471 5 0.278400251436668 3 3 0 -5.76463014512687 LTS-020 chr11 56508620 57080674 572055 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, TNKS1BP1) 0.463319164290052 8 0.0200672974904801 1.0496326246555 334 0.229654711819532 4 2 2 -10.5613622919893 LTS-020 chr11 57080675 58170025 1089351 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, OR5B3, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, OR10W1, SLC43A1, TNKS1BP1, UBE2L6) 0.458281788168502 35 0.0410474208239997 0.994782576710299 1590 0.245932634891281 4 2 2 -8.27272082660401 LTS-020 chr11 58170026 58170143 118 * OR5B3 0.415 1 NA 1.42197100315116 3 3.36268151926405 5 5 0 -5.76441013537471 LTS-020 chr11 58170144 61314753 3144610 * c(MIR3162, MIR4488, GLYAT, PTGDR2, CNTF, DDB1, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, ZP1, DTX4, MS4A6E, TKFC, GIF, PRPF19, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, OR5B3, OSBP, MS4A13, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, NA NA NA NA NA NA NA NA NA LTS-020 MS4A7, FAM111A, MS4A6A, MS4A5, PGA3, PGA4, STX3, TCN1, TMEM109, CCDC86, CPSF7, ZFP91, OR10V2P, MS4A8, MS4A14, SYT7, CD5, GLYATL1, CD6, MS4A1, MS4A3, LPXN) 0.385759772609718 59 0.179172365088635 1.00754211653439 4243 0.299808214064932 3 2 1 -6.80082273794681 LTS-020 NA NA NA NA LTS-020 chr11 61314754 61487690 172937 * c(RPLP0P2, DAGLA, SYT7) 0.407 1 NA 0.882114343386109 31 0.190851239710212 3 3 0 -5.78222204952212 LTS-020 chr11 61487691 62572868 1085178 * c(MIR1908, HNRNPUL2-BSCL2, NXF1, TAF6L, SCGB1D2, SCGB1D1, EEF1G, LRRN4CL, HNRNPUL2, FEN1, GANAB, FTH1, EML3, DKFZP434K028, B3GAT3, BSCL2, GNG3, TTC9C, INCENP, TMEM179B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, RAB3IL1, ROM1, TUT1, SNORA57, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, ASRGL1, INTS5, MTA2, FADS2) 0.468232953600541 44 0.0303784010702608 0.98272250278672 3180 0.232450479810834 4 2 2 -9.52938722125688 LTS-020 chr11 62572869 62871049 298181 * c(NXF1, CHRM1, SNHG1, SLC22A24, WDR74, SLC3A2, STX5, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0 1 NA 0.989472089743333 517 0.349871008058255 3 3 0 -5.7662679805149 LTS-020 chr11 62871050 63283220 412171 * c(SLC22A9, HRASLS5, SLC22A24, SLC22A25, SLC22A10, LGALS12) 0.268598989086794 9 0.218164183841233 0.953694589820106 405 0.479485847546932 4 3 1 -6.80020973408424 LTS-020 chr11 63283221 63381877 98657 * c(PLA2G16, HRASLS2, RARRES3, LGALS12) 0.475 1 NA 0.959475612501287 147 0.218297855217123 3 3 0 -5.76443964312557 LTS-020 chr11 63381878 65004309 1622432 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, RTN3, EHD1, STIP1, PLA2G16, CDCA5, BATF2, SLC22A12, COX8A, C11orf84, GPHA2, MARK2, ESRRA, FAU, FKBP2, ATG2A, FLRT1, PRDX5, TEX40, ATL3, PPP1R14B, MAJIN, CCDC88B, RCOR2, MACROD1, SAC3D1, DNAJC4, SPDYC, ARL2, MIR192, MIR194-2, MEN1, SLC22A20, KCNK4, TRMT112, PLCB3, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, PYGM, MAP4K2, C11orf95, NA NA NA NA NA NA NA NA NA LTS-020 TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, NAA40, CAPN1, FERMT3, TRPT1, NUDT22, SYVN1, RPS6KA4, NRXN2) 0.453449175518801 51 0.0486791496211996 0.979580090904025 4655 0.207073296150211 4 2 2 -8.24982485009483 LTS-020 NA NA NA NA LTS-020 chr11 65004310 65009469 5160 * SLC22A20 0 1 NA 1.22243854044493 7 1.82098145959548 4 4 0 -5.76441125806713 LTS-020 chr11 65009470 65029467 19998 * c(POLA2, SLC22A20) NA 0 NA 0.739537027834381 12 0.177878320684947 2 NA NA -5.76449028577033 LTS-020 chr11 65029468 66392848 1363381 * c(RBM14-RBM4, MIR4489, MIR4690, DPP3, KCNK7, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, TIGD3, FAM89B, POLA2, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, TMEM151A, BRMS1, NPAS4, SLC25A45, NEAT1, EFEMP2, SLC29A2, MALAT1, PCNX3, LTBP3, MAP3K11, OVOL1, CCDC87, PACS1, CD248, SCYL1, BBS1, RELA, DPF2, KLC2, SIPA1, MRPL11, MUS81, FOSL1, NA NA NA NA NA NA NA NA NA LTS-020 RAB1B, C11orf68, FRMD8, RNASEH2C, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, AP5B1, FIBP, RIN1, CCS) 0.356717902557086 46 0.0912713134396829 1.32913762566745 4641 0.293956677708194 5 3 2 -6.81804024473417 LTS-020 NA NA NA NA LTS-020 chr11 66392849 66568271 175423 * c(RBM14-RBM4, RBM14, RBM4, SPTBN2, C11orf80, RBM4B) 0 1 NA 1.73097615156606 445 0.382843560466501 6 6 0 -5.76686494080826 LTS-020 chr11 66568272 66817171 248900 * c(C11orf86, PC, LRFN4, C11orf80, SYT12, RCE1) 0.488 1 NA 1.71350171547811 379 0.300066084450781 6 6 0 -5.76828220177429 LTS-020 chr11 66817172 92085330 25268159 * c(NAALAD2, KCNE3, MIR708, LOC100129216, LOC100130987, LOC100133315, KCTD21-AS1, MIR548K, SNORA70E, MIR4300, MIR3165, MIR3664, RAB30-AS1, LOC100506368, TPBGL, NDUFC2-KCTD14, MIR4490, MIR4696, MIR4691, MIR4692, IL18BP, MIR5579, GRM5-AS1, SHANK2-AS1, CDK2AP2, TCIRG1, POLD3, CTSC, STARD10, NEU3, ME3, PRSS23, CHKA, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, FAT3, TRIM64, CLNS1A, CPT1A, XRRA1, GRK2, DHCR7, DLG2, NA NA NA NA NA NA NA NA NA LTS-020 B3GNT6, CTTN, FOLH1B, MRPL21, TPCN2, GDPD4, DDIAS, CCDC83, ORAOV1, SHANK2-AS3, LRTOMT, FAM181B, CCDC89, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, RAB38, DEFB108B, RNF169, NUDT8, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, CHORDC1, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, GRM5, GSTP1, RHOD, ANKRD13D, ANKRD42, OR2AT4, TBX10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 IGHMBP2, INPPL1, TBC1D10C, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GPR152, DOC2GP, GUCY2EP, TRIM77, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NDUFV1, NDUFS8, NUMA1, OMP, P2RY2, P2RY6, NOX4, PAK1, GAL, KMT5B, COA4, PDE2A, PPME1, CABP2, HIKESHI, PCF11, MRPL48, RSF1, C11orf24, SYTL2, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, ACER3, PRCP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TMEM126B, THAP12, EMSY, CABP4, TRIM49, CORO1B, USP35, CARNS1, POLD4, KRTAP5-8, PTPRCAP, PLEKHB1, CREBZF, RAB6A, RAD9A, CCND1, CCDC90B, CCDC81, SNORD15A, RPS3, RPS6KB2, TRIM64B, TRIM49C, UBTFL1, FAM86C2P, TMEM135, KCTD14, THRSP, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, TMEM134, PAAF1, GDPD5, CLPB, UNC93B1, PICALM, FZD4, TMEM126A, DGAT2, RELT, PPFIA1, OR7E2P, SERPINH1, EED, FADD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ATG16L2, AIP, SYT12, ACY3, INTS4, PITPNM1, TESMIN, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.427225292508464 305 0.126832206248438 1.67638134834557 16759 0.463876964348491 6 3 3 -6.82603166823476 LTS-020 NA NA NA NA LTS-020 chr11 92085331 92600266 514936 * FAT3 0.378 1 NA 1.43434657836547 277 0.237440723353601 5 5 0 -5.76648447883831 LTS-020 chr11 92600267 92622244 21978 * FAT3 0.333 1 NA 1.45800514052355 29 0.341102981286245 5 5 0 -5.76455553230449 LTS-020 chr11 92622245 93469286 847042 * c(MIR1304, SLC36A4, FAT3, DEUP1, MTNR1B, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295) 0.323213880077362 17 0.129272000061885 1.37456542645942 659 0.484592660577751 4 3 1 -6.79205308449514 LTS-020 chr11 93469287 93482294 13008 * c(C11orf54, TAF1D) 0 1 NA 1.40787517806909 59 0.372880375456976 5 5 0 -5.76441017342411 LTS-020 chr11 93482295 94731243 1248949 * c(GPR83, PIWIL4, AMOTL1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, MRE11A, CWC15, ANKRD49, KDM4D, C11orf97, MED17) 0.155297547308604 9 0.206140391750649 1.35258245331813 1373 0.376787797948752 5 5 0 -6.7841878375304 LTS-020 chr11 94731244 94732407 1164 * KDM4D 0.366 1 NA 1.43533940752627 23 0.19362987797411 5 5 0 -5.76441769206548 LTS-020 chr11 94732408 119534698 24802291 * c(LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, BACE1-AS, MIR4301, MIR1260B, USP2-AS1, MIR3920, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, MIR4693, LOC100652768, JRKL-AS1, LOC101054525, RBM7, MPZL2, YAP1, HYOU1, ATP5L, TREH, CARD16, TMEM123, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, FAM76B, SESN3, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, NA NA NA NA NA NA NA NA NA LTS-020 DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, ENDOD1, EXPH5, PHLDB1, SIK2, SIK3, BACE1, CADM1, ANGPTL5, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, GRIA4, GUCY1A2, H2AFX, HMBS, BIRC2, BIRC3, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, KDM4E, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MCAM, KMT2A, MMP1, MMP3, MMP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MMP8, MMP10, MMP12, MMP13, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, PGR, FXYD6, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, KDM4D, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, CEP126, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, RPS25, SCN2B, SCN4B, SDHD, MMP27, ABCG4, CXCR5, LOC643733, LOC643923, CLDN25, C11orf1, RPL23AP64, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SLN, TAGLN, THY1, TRPC6, UPK2, ZBTB16, RNF26, DYNC2H1, NLRX1, CCDC82, ALG9, PDZD3, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, BCO2, TMEM133, TMPRSS13, DCUN1D5, MSANTD4, MAML2, BUD13, TMEM25, C11orf70, DIXDC1, ZC3H12C, CBL, JRKL, ZPR1, MTMR2, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, UBE4A, CEP57, C2CD2L) 0.34435238183474 326 0.110533412081636 1.34605595412422 17352 0.487430414808772 5 3 2 -6.93004709225168 LTS-020 NA NA NA NA LTS-020 chr11 119534699 134856661 15321963 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, NA NA NA NA NA NA NA NA NA LTS-020 LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.338435491541512 288 0.116463858847432 1.38583700028123 10479 0.643359595767819 5 3 2 -6.83003547095309 LTS-020 NA NA NA NA LTS-020 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.214 1 NA NA NA NA NA LTS-020 chr12 90923 90953 31 * LOC100288778 0.213 1 NA 1.199 1 NA NA NA NA NA LTS-020 chr12 90954 6428606 6337653 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, IQSEC3, NDUFA9, NINJ2, NTF3, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, NA NA NA NA NA NA NA NA NA LTS-020 WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, DYRK4, CCND2, CD9, CACNA2D4) 0.428078683561604 160 0.110564466346804 0.999793539737551 5582 0.322976108031062 3 2 1 -6.99620831574665 LTS-020 NA NA NA NA LTS-020 chr12 6428607 6428621 15 * PLEKHG6 0.49 1 NA 1.048 1 NA NA NA NA NA LTS-020 chr12 6428622 7276847 848226 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD27, NCAPD2) 0.462754660561386 77 0.0287050608687827 0.985982389604355 3124 0.231840257253903 4 2 2 -9.38017827756299 LTS-020 chr12 7276848 7277429 582 * RBP5 0 1 NA 1.617269724333 8 1.32367788485611 6 6 0 -5.76441015248282 LTS-020 chr12 7277430 7585247 307818 * c(CD163L1, ACSM4, PEX5, RBP5, CLSTN3) 0.306562180062567 12 0.215510581192805 1.00874749911258 502 0.407040424857203 4 3 1 -6.76053916105381 LTS-020 chr12 7585248 7585303 56 * CD163L1 NA 0 NA 0.73 1 NA NA NA NA NA LTS-020 chr12 7585304 9590154 2004851 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.201805785837031 66 0.103097696215943 0.618627973723914 2346 0.262517164172612 2 2 0 -7.17502267084606 LTS-020 chr12 9590155 9590570 416 * DDX12P NA 0 NA 0.064 1 NA NA NA NA NA LTS-020 chr12 9590571 9717935 127365 * DDX12P NA 0 NA 0.0794856853341839 95 0.0341037117905769 0 NA NA -16.4415247200357 LTS-020 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.613 1 NA NA NA NA NA LTS-020 chr12 9747241 10069302 322062 * c(KLRF2, CLECL1, CLEC2D, LOC374443, KLRB1, CLEC2A, KLRF1, CD69, CLEC2B) 0.210767822931053 7 0.017468338705866 0.594071622914211 285 0.174642745793421 2 2 0 -7.6364821007824 LTS-020 chr12 10069303 10145008 75706 * c(CLEC12A, CLEC2A) 0 1 NA 0.595571222098858 109 0.489015393638857 1 1 0 -5.76983663140277 LTS-020 chr12 10145009 10344387 199379 * c(TMEM52B, CLEC9A, CLEC12B, OLR1, CLEC1B, CLEC1A, CLEC7A) 0.110588587398518 9 0.117034301714402 0.588644220756887 471 0.316746866690003 3 3 0 -7.05601075989984 LTS-020 chr12 10344388 10365574 21187 * c(TMEM52B, GABARAPL1) 0.223 1 NA 0.390669149916131 7 0.135100844169228 1 1 0 -5.80850834145352 LTS-020 chr12 10365575 10573094 207520 * c(KLRC4-KLRK1, KLRK1, GABARAPL1, KLRC3, KLRD1, KLRC4) 0.233588993777857 4 0.0647276344899662 0.578914636532585 217 0.161469666211125 1 1 0 -7.06973311397882 LTS-020 chr12 10573095 10573097 3 * KLRC3 NA 0 NA 0.813 1 NA NA NA NA NA LTS-020 chr12 10573098 10588581 15484 * c(KLRC2, KLRC3) 0.304639975086361 4 0.11990378086894 0.997130266689607 63 0.321426156672957 4 3 1 -6.73582646852441 LTS-020 chr12 10588582 10588655 74 * c(KLRC2, KLRC3) NA 0 NA 0.616 1 NA NA NA NA NA LTS-020 chr12 10588656 11904770 1316115 * c(SMIM10L1, PRH1-PRR4, KLRA1P, PRR4, ETV6, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, LINC01252, TAS2R42, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB1, PRB3, PRB4, PRH1, PRH2, PRB2, YBX3) 0.261939139509897 82 0.116723396324917 0.646884294950522 951 0.362286343033147 2 2 0 -7.02804017780062 LTS-020 chr12 11904771 12037568 132798 * ETV6 NA 0 NA 0.639345413750107 52 0.153964805678545 2 NA NA -5.82157979366387 LTS-020 chr12 12037569 12044195 6627 * ETV6 0.423 1 NA 0.939440194170478 13 0.171042954568998 3 3 0 -5.7644459243985 LTS-020 chr12 12044196 34180172 22135977 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, SLCO1B7, NA NA NA NA NA NA NA NA NA LTS-020 SMCO2, OVCH1, SYT10, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, RECQL, MRPS35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, ALG10, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.429201301579075 243 0.120849683443957 0.987551789700176 11609 0.512640578841833 3 2 1 -6.95269236463284 LTS-020 NA NA NA NA LTS-020 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 0.982790755758724 13 0.155723785710139 3 NA NA -5.76446169609915 LTS-020 chr12 38710341 38710459 119 * character(0) 0.462 1 NA 0.438749533806116 5 0.276618871373592 1 1 0 -5.76442737283198 LTS-020 chr12 38710460 40499888 1789429 * c(SLC2A13, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.324429951452886 7 0.226488935922349 0.96006681984757 828 0.241144419126414 3 2 1 -6.75315196643625 LTS-020 chr12 40499889 40618704 118816 * character(0) NA 0 NA 0.592 1 NA NA NA NA NA LTS-020 chr12 40618705 42477988 1859284 * c(LRRK2, CNTN1, GXYLT1, PDZRN4) 0.211459446526862 32 0.070946936099704 0.666268292148356 1300 0.242521127183462 2 2 0 -6.92901151146388 LTS-020 chr12 42477989 42479188 1200 * GXYLT1 0.276007629007112 3 0.00793725393319376 1.05577529143671 40 0.508440753046974 1 1 0 -6.73556974585605 LTS-020 chr12 42479189 58203354 15724166 * c(HOTAIR, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1228, MIR1293, LOC100335030, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, YAF2, CDK2, CDK4, RNF41, GDF11, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, ADCY6, GALNT6, NXPH4, KRT71, GPR182, LARP4, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, RHEBL1, NA NA NA NA NA NA NA NA NA LTS-020 C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, COL2A1, ASB8, MYL6B, KRT72, CS, PRICKLE1, BCDIN3D, KRT80, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ANO6, ARID2, EIF4B, CELA1, ERBB3, COPZ1, R3HDM2, FAIM2, DDN, NEMP1, ESYT1, TNS2, KCNH3, CBX5, ANP32D, SMUG1, STAC3, OR6C74, OR6C3, LINC00935, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 GLI1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, GXYLT1, TMPRSS12, KRT6C, ORMDL2, RACGAP1, SENP1, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, ARF3, KIF5A, KRT1, KRT2, KRT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FIGNL2, OR6C65, OR6C68, LRP1, MIR196A2, ASIC1, MARS, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NELL2, NFE2, SLC11A2, PA2G4, ATP5B, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PPHLN1, IL23A, HDAC7, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, PRIM1, SLC48A1, PRKAG1, LMBR1L, PRPH, NDUFA4L2, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SUOX, TAC3, TARBP2, SNORD59B, MIR615, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, PIP4K2C, DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, CSRNP2, PUS7L, INHBE, RACGAP1P, FAM186B, TMEM117, PYM1, SARNP, SOAT2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MARCH9, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.20562659967416 421 0.0750860885098232 0.639371827005502 25253 0.354766277486348 2 2 0 -7.82450757412502 LTS-020 NA NA NA NA LTS-020 chr12 58203355 58216989 13635 * c(CTDSP2, AVIL) 0.396 1 NA 0.597721236498556 113 0.118321954264353 1 1 0 -5.78178743416051 LTS-020 chr12 58216990 58335626 118637 * c(LOC100506844, CTDSP2, MIR26A2, ATP23) 0.362447750262816 20 0.104916244791036 0.592117717621088 110 0.249810841699325 2 1 1 -6.83129042451161 LTS-020 chr12 58335627 58350631 15005 * ATP23 0.239 1 NA 0.652309646453709 25 0.0738191935294158 2 2 0 -5.78468389370797 LTS-020 chr12 58350632 93793003 35442372 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, POC1B-GALNT4, MIR4699, MIR548AL, TMEM5, CCT2, FRS2, GLIPR1, CPSF6, KERA, KRR1, NUDT4, WIF1, IRAK3, XPOT, OSBPL8, C12orf56, RAB3IP, LRIG3, TPH2, CPM, GLIPR1L2, TSPAN19, BEST3, E2F7, C12orf66, CSRP2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, ZFC3H1, CCER1, RPSAP52, PHLDA1, RAB21, MON2, TBC1D30, ZDHHC17, NA NA NA NA NA NA NA NA NA LTS-020 GRIP1, LEMD3, MSRB3, LINC01619, GLIPR1L1, MGAT4C, KCNMB4, GNS, POC1B, OTOGL, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, CCDC59, TBK1, TRHDE, LINC00936, C12orf74, FAM19A2, IFNG, PTPRQ, KCNC2, LRRC10, FLJ41278, MKRN9P, LUM, MIRLET7I, LYZ, MDM2, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, ATP2B1, NTS, IL22, PAWR, TMBIM4, SLC6A15, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 NUP107, CLLU1OS, CLLU1, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, LOC643339, TBC1D15, SYT1, MIR548C, MIR617, MIR618, BTG1, TSPAN8, LOC728084, MRS2P2, ACSS3, BBS10, CEP290, YEATS4, HMGA2, ALX1, THAP2, EEA1, LRRIQ1, METTL25, LLPH, DYRK2, CAPS2, PPFIA2, LGR5, GALNT4, LIN7A, NAV3, C12orf29, ATP23, RASSF9, SLC16A7, HELB, USP15) 0.179011738738952 216 0.0986287996291097 0.646509524014264 14259 0.24537149563431 2 2 0 -9.7141332070214 LTS-020 NA NA NA NA LTS-020 chr12 93793004 93796068 3065 * NUDT4 0.404 1 NA 0.910470547327961 57 0.272171257867216 3 3 0 -5.7644662493813 LTS-020 chr12 93796069 93796167 99 * NUDT4 NA 0 NA 0.678 1 NA NA NA NA NA LTS-020 chr12 93796168 124496077 30699910 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR4304, MIR3685, MIR3652, MIR3922, MIR3908, LOC100505978, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5700, ARPC3, PLXNC1, MPHOSPH9, CAMKK2, TRAFD1, TMED2, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, SNRNP35, PRDM4, CIT, PWP1, FICD, NUDT4, SDSL, IQCD, NA NA NA NA NA NA NA NA NA LTS-020 DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, SPPL3, CMKLR1, COX6A1, CRY1, AMDHD1, ZNF664, TMEM120B, WDR66, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DTX1, RILPL2, DNAH10, PLBD2, FAM71C, RMST, EIF2B1, ELK3, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, UHRF1BP1L, CUX2, KIAA1033, MED13L, SIRT4, ABCB9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ISCU, ATP6V0A2, CORO1C, SLC17A8, TTC41P, LRRC43, TCP11L2, TBX5-AS1, FBXW8, HSPB8, HCAR1, UTP20, MORN3, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, MRPL42, IFT81, GTF2H3, FAM216A, HCFC2, HAL, APAF1, ACACB, HPD, MMAB, HCAR2, TMEM119, LINC01089, IGF1, ACADS, RILPL1, C12orf42, IL31, C12orf75, CFAP73, TMEM233, KMT5A, ARL1, C12orf76, LTA4H, MIR135A2, ASCL1, MIR331, MSI1, MVK, MYBPC1, MYL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 NFYB, NOS1, ATP2A2, OAS1, EID3, OAS2, OAS3, P2RX4, P2RX7, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, ARL6IP4, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, RHOF, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, SBNO1, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, ZCCHC8, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, DIABLO, ANKS1B, CHPT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PSMD9, TMCC3, PITPNM2, DDX55, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643711, LOC643770, SUDS3, ACTR6, C12orf43, VPS33A, RSRC2, SNRPF, SNORA53, TBX5, TBX3, HNF1A, MIR620, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, B3GNT4, TCTN1, OGFOD2, VPS37B, C12orf49, TCTN2, NAA25, SLC8B1, RNF34, CCDC92, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MTERF2, ACAD10, CDK2AP1, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, TCHP, COQ5, HVCN1, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DENR, OASL, DYNLL1, SRSF9, CRADD, HRK, ADAM1A, SOCS2, HCAR3, ANKRD13A, TMEM116, UBE3B, HIP1R, TMEM263, C12orf65, BICDL1, CABP1, WSCD2, SART3, KNTC1, MLEC, GIT2, NUAK1, RBM19, RNF10, NR1H4) 0.195722027433451 509 0.0982048052330668 0.634282195107407 29287 0.315994529421642 2 2 0 -9.08295651109827 LTS-020 NA NA NA NA LTS-020 chr12 124496078 124496153 76 * c(ZNF664-FAM101A, ZNF664) 0.453 1 NA 1.293 1 NA NA NA NA NA LTS-020 chr12 124496154 124499839 3686 * c(ZNF664-FAM101A, ZNF664) 0.352269952516224 3 0.197689149929884 1.06870063230506 77 0.30300859359465 3 2 1 -6.73597967593471 LTS-020 chr12 124499840 124499851 12 * c(ZNF664-FAM101A, ZNF664) NA 0 NA 0.783 1 NA NA NA NA NA LTS-020 chr12 124499852 133811705 9311854 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, ZNF891, ZNF268, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, ANHX, AACS, NA NA NA NA NA NA NA NA NA LTS-020 SNORA49, UBC, ZNF10, ZNF140, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.203404477082197 199 0.0760278124275896 0.650953195644573 5838 0.223621853583286 2 2 0 -7.91546173217656 LTS-020 NA NA NA NA LTS-020 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.569797010167972 19 0.0428699242984721 1 NA NA -5.76950553319843 LTS-020 chr13 19271620 19271676 57 * character(0) 0.475 1 NA 0.75 1 NA NA NA NA NA LTS-020 chr13 19271677 20438709 1167033 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, MPHOSPH8, PSPC1, TUBA3C, ZMYM5, TPTE2) 0.425321781078701 8 0.0708212034431981 0.953342546161554 384 0.273588310897739 3 2 1 -7.13452982115912 LTS-020 chr13 20438710 20539330 100621 * ZMYM2 NA 0 NA 1.358 1 NA NA NA NA NA LTS-020 chr13 20539331 20661118 121788 * ZMYM2 0.354 1 NA 1.34075485144601 141 0.351565327836201 5 5 0 -5.76577297222796 LTS-020 chr13 20661119 20714429 53311 * c(GJA3, ZMYM2) 0 1 NA 1.42960008025825 89 0.923538442956208 5 5 0 -5.76441990895797 LTS-020 chr13 20714430 21476738 762309 * c(MIR4499, GJB6, EEF1AKMT1, GJA3, GJB2, CRYL1, IL17D, XPO4, IFT88) 0.31031194615327 14 0.145053836159598 1.27869384329621 594 0.48901943620112 4 3 1 -6.74546533499834 LTS-020 chr13 21476739 21547858 71120 * c(LATS2, XPO4) 0 1 NA 1.19623590513216 23 1.08174411577591 4 4 0 -5.76441631946863 LTS-020 chr13 21547859 21620472 72614 * LATS2 NA 0 NA 1.30716401524558 107 0.284879058444805 5 NA NA -5.76730025372823 LTS-020 chr13 21620473 21714605 94133 * LATS2 NA 0 NA 1.049 1 NA NA NA NA NA LTS-020 chr13 21714606 25525544 3810939 * c(MIR2276, SACS-AS1, LINC00327, LINC00424, SPATA13-AS1, SAP18, PARP4, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, C1QTNF9B-AS1, TNFRSF19, CENPJ, RNF17, SGCG, BASP1P1, TPTE2P1, MIPEPP3, MRPL57) 0.148142320175185 48 0.0764066638464332 0.958565694747909 1979 0.32404280226829 3 3 0 -6.73361337888969 LTS-020 chr13 25525545 25599975 74431 * TPTE2P1 0.36 1 NA 0.484460680786314 5 0.186605198212697 1 1 0 -5.7662021235181 LTS-020 chr13 25599976 25739871 139896 * PABPC3 0.244669695852452 21 0.0493192708400122 1.00208347202436 195 0.823451651920432 5 4 1 -6.80393273177127 LTS-020 chr13 25739872 25740256 385 * character(0) 0.182 1 NA 0.772254434097196 9 0.141632839098534 2 2 0 -5.7644485436499 LTS-020 chr13 25740257 47470824 21730568 * c(LINC00426, TPT1-AS1, PAN3-AS1, MIR548F5, MIR320D1, MIR4305, MINOS1P1, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, TPTE2P5, MIR5006, LINC00563, LINC00297, MTUS2-AS1, LINC00332, LINC00366, LINC00398, LINC00423, LINC00457, LINC00571, STARD13-AS, SMIM2-IT1, FRY, SLC25A15, LHFP, USPL1, CDK8, MRPS31, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, WBP4, AKAP11, EXOSC8, N4BP2L2-IT2, LINC00284, CSNK1A1L, RXFP2, NA NA NA NA NA NA NA NA NA LTS-020 TEX26, CPB2, FAM216B, LACC1, LINC00330, B3GLCT, DGKH, CCDC122, STOML3, EEF1DP3, ELF1, ESD, AMER2, USP12, MTIF3, GSX1, ERICH6B, SPERT, LNX2, PDS5B, VWA8, FOXO1, ZC3H13, SPG20, LRCH1, FLT1, FLT3, MTUS2, ALOX5AP, SLC25A30, PAN3, NUFIP1, SNORD102, NBEA, GPR12, SUGT1P3, SIAH3, SLC46A3, RGCC, DNAJC15, GTF2F2, GTF3A, ALG5, HMGB1, HTR2A, FREM2, PDX1, KCTD4, RASL11A, SHISA2, NHLRC3, SERP2, LCP1, SERTM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 LINC00547, LINC00548, SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, UFM1, ATP8A2, UBL3, SOHLH2, ENOX1, GPALPP1, SUPT20H, COG6, RFC3, RFXAP, RNF6, RPL21, SNORA27, TSC22D1-AS1, URAD, ZAR1L, LINC00598, SLC7A1, BRCA2, SNORA31, MIR621, TPT1, TRPC4, CCDC169, NAA16, RUBCNL, PROSER1, COG3, KATNAL1, KBTBD7, MEDAG, TNFSF11, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, MTMR6, DCLK1, KL, EPSTI1, MTRF1, NUP58) 0.124713918779607 193 0.0614015071290616 0.94851813049553 11477 0.32300029398024 3 3 0 -6.8136876021849 LTS-020 NA NA NA NA LTS-020 chr13 47470825 48516867 1046043 * c(HTR2A, SUCLA2) NA 0 NA 0.960316474269274 8 0.119138499834676 3 NA NA -5.76587172815855 LTS-020 chr13 48516868 48523594 6727 * SUCLA2 0 1 NA 1.26269082453012 17 0.258195121154981 4 4 0 -5.76468258488512 LTS-020 chr13 48523595 52483462 3959868 * c(LINC00462, MIR3613, MIR4703, MIR5693, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, LPAR6, TRIM13, DLEU1, RCBTB2, ARL11, WDFY2, ST13P4, DLEU7, FAM124A, CTAGE10P, FNDC3A, INTS6, KCNRG, LINC00282, MLNR, MED4, GUCY1B2, KPNA3, MIR16-1, PHF11, RCBTB1, NUDT15, CYSLTR2, SPRYD7, RB1, LINC00371, SERPINE3, RNASEH2B, DHRS12, CDADC1, CAB39L, CCDC70, SETDB2, EBPL, SUCLA2, DLEU2, ITM2B) 0.101833951980252 31 0.04026287278289 1.23986733932149 2448 1.32572702347502 5 5 0 -6.75590277060731 LTS-020 chr13 52483463 52492461 8999 * character(0) NA 0 NA 1.765 1 NA NA NA NA NA LTS-020 chr13 52492462 114839373 62346912 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-020 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.0935097265699933 306 0.0476979506127931 1.30592537764846 14341 0.47436924230861 5 5 0 -7.54515570383822 LTS-020 NA NA NA NA LTS-020 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.63 1 NA NA NA NA NA LTS-020 chr13 114897818 115091399 193582 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.10099498742765 13 0.0392717357748449 1.09575173929889 209 0.328640798346013 5 5 0 -6.79987913983006 LTS-020 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 0.998012213574844 29 0.10883309633169 3 NA NA -5.76455069637642 LTS-020 chr14 19434116 19685516 251401 * c(BMS1P17, POTEG) 0.429 1 NA 0.571731641184736 4 0.218114648751522 1 1 0 -5.81611103493233 LTS-020 chr14 19685517 22337119 2651603 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, POTEM, NA NA NA NA NA NA NA NA NA LTS-020 EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR11H2, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.447518524086021 135 0.0764019273660784 1.00684176246694 3631 0.736236635601436 4 2 2 -7.10082291479075 LTS-020 NA NA NA NA LTS-020 chr14 22337120 22991095 653976 * character(0) 0.433093807947756 26 0.050389925733073 1.18898141249948 759 0.329223627781528 4 2 2 -7.09623735553895 LTS-020 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.926 1 NA NA NA NA NA LTS-020 chr14 22992444 23102896 110453 * c(DAD1, ABHD4) 0.441638622252679 21 0.0408000933705748 0.977404430900661 301 0.388176876176606 4 2 2 -7.50788781103783 LTS-020 chr14 23102897 23102976 80 * character(0) 0 1 NA 1.81722750783596 3 3.12154256738555 7 7 0 -5.76441013711672 LTS-020 chr14 23102977 23242484 139508 * c(OXA1L, SLC7A7) 0.349592679415295 10 0.202514306764842 0.930651788251724 98 0.321745133756751 3 2 1 -6.73721244607564 LTS-020 chr14 23242485 23248112 5628 * SLC7A7 0.484 1 NA 0.939839811498002 41 0.168893612783386 3 3 0 -5.76443969454109 LTS-020 chr14 23248113 24901249 1653137 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, MRPL52, PSMB11, LTB4R, MDP1, FITM1, REM2, NOP9, ADCY4, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, LTB4R2, PSMB5, PSME1, PSME2, NYNRIN, NA NA NA NA NA NA NA NA NA LTS-020 HOMEZ, RABGGTA, BCL2L2, C14orf93, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.460669684093856 102 0.0333446845358999 0.985948565063487 5681 0.226531424114656 4 2 2 -9.1189054886451 LTS-020 NA NA NA NA LTS-020 chr14 24901250 24976674 75425 * c(CMA1, KHNYN, SDR39U1) 0 1 NA 0.981806188904193 163 0.280165208886188 3 3 0 -5.76485827892759 LTS-020 chr14 24976675 32257058 7280384 * c(MIR4307, LINC00645, LOC100506071, MIR548AI, AP4S1, DTD2, CMA1, CTSG, COCH, FOXG1, SCFD1, HECTD1, HEATR5A, GPR33, STXBP6, STRN3, GZMH, GZMB, LINC01551, NOVA1, G2E3, PRKD1, MIR624, NUBPL) 0.395398846355367 36 0.158434150860003 0.975638802502174 1835 0.288527497733076 3 2 1 -6.77880536901593 LTS-020 chr14 32257059 32414145 157087 * NUBPL 0.492 1 NA 1.02240251828872 51 0.210412183722387 3 3 0 -5.77435295439886 LTS-020 chr14 32414146 34903778 2489633 * c(EGLN3, SPTSSA, ARHGAP5, NPAS3, ARHGAP5-AS1, AKAP6) 0.455372327208084 7 0.0401473476559725 1.00876483148882 929 0.202976295176382 4 2 2 -8.71067783875448 LTS-020 chr14 34903779 35873770 969992 * c(CFL2, BAZ1A, SPTSSA, IGBP1P1, FAM177A1, NFKBIA, PPP2R3C, EAPP, PSMA6, SNX6, SRP54, KIAA0391) 0.465731293694845 15 0.0375895122151303 0.922561641322067 807 0.216678800813898 2 1 1 -9.04079329520781 LTS-020 chr14 35873771 36003936 130166 * c(NFKBIA, INSM2) 0.318 1 NA 0.941377462909023 21 0.288109114581198 3 3 0 -5.76459901105501 LTS-020 chr14 36003937 38060646 2056710 * c(SLC25A21-AS1, MIR4503, PTCSC3, LINC00609, MIPOL1, RALGAPA1, SFTA3, NKX2-8, FOXA1, PAX9, MBIP, NKX2-1, BRMS1L, INSM2, SLC25A21) 0.322642710093947 9 0.234110432156375 0.97974181614568 1082 0.317453381350968 3 2 1 -6.76109859099576 LTS-020 chr14 38060647 38194107 133461 * FOXA1 0.46 1 NA 1.02251392208385 85 0.182280970210388 3 3 0 -5.77569944321074 LTS-020 chr14 38194108 44589218 6395111 * c(LOC100288846, SEC23A, NA, TRAPPC6B, LRFN5, CLEC14A, FBXO33, LINC00639, MIA2, PNN, SSTR1, GEMIN2) 0.450726799052495 19 0.0412691210334942 0.949173566322437 1080 0.257434174645132 3 2 1 -8.58877864235761 LTS-020 chr14 44589219 44974990 385772 * FSCB 0 1 NA 0.987923589881957 31 0.834112459863132 3 3 0 -5.76479678690777 LTS-020 chr14 44974991 50246428 5271438 * c(SNORD127, MIR548Y, LINC00871, LINC00648, C14orf28, LRR1, KLHDC1, RPL10L, MDGA2, FKBP3, FAM179B, KLHDC2, MGAT2, POLE2, KLHL28, PRPF39, DNAAF2, MIS18BP1, FANCM, RPL36AL, RPS29, FSCB, NEMF) 0.326058306473894 13 0.231425598610672 0.970107298205596 1397 0.245675870275799 3 2 1 -6.76352462399938 LTS-020 chr14 50246429 50318458 72030 * c(KLHDC2, NEMF) 0.484 1 NA 0.913794768913534 191 0.224655683517415 3 3 0 -5.7660604599462 LTS-020 chr14 50318459 51411479 1093021 * c(NA, MAP4K5, ABHD12B, LINC01599, ATP5S, LINC01588, ARF6, ATL1, NIN, PYGL, SAV1, SOS2, VCPKMT, L2HGDH, CDKL1, NEMF) 0.458682073502964 26 0.0971431695211526 0.927158950295947 1446 0.248123068068514 3 2 1 -7.25000412612644 LTS-020 chr14 51411480 51443499 32020 * TRIM9 0 1 NA 1.04665240564966 35 0.879113602471501 3 3 0 -5.76461979232457 LTS-020 chr14 51443500 53224064 1780565 * c(FRMD6-AS2, TRIM9, FRMD6, FRMD6-AS1, NID2, LINC00640, GPR137C, ERO1A, C14orf166, GNG2, PSMC6, PTGDR, PTGER2, TXNDC16, STYX, TMX1) 0.36150278619063 19 0.191273525098244 0.939684776660522 1331 0.28362413578578 3 2 1 -6.73666289475738 LTS-020 chr14 53224065 53324891 100827 * c(FERMT2, GNPNAT1, STYX) 0.491 1 NA 0.943007848963717 191 0.258655928050101 3 3 0 -5.76455002556645 LTS-020 chr14 53324892 60076783 6751892 * c(KTN1-AS1, OTX2-AS1, MIR4308, MIR5580, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, L3HYPDH, SOCS4, NAA30, C14orf37, ATG14, DAAM1, SAMD4A, GCH1, TIMM9, GMFB, SLC35F4, PSMA3-AS1, TBPL2, TOMM20L, KTN1, LGALS3, OTX2, DACT1, JKAMP, TMEM260, FBXO34, C14orf105, AP5M1, ACTR10, PSMA3, PELI2, ARID4A, RTN1, RPL13AP3, LINC00520, GPR135, BMP4, CCDC175, DDHD1, MAPK1IP1L, KIAA0586, DLGAP5) 0.437125450806573 82 0.103658413535892 0.961291738991522 4141 0.307693833822933 3 2 1 -7.00934790890917 LTS-020 chr14 60076784 60394709 317926 * c(LRRC9, RTN1) 0 1 NA 0.941254864910188 72 0.383911225708955 3 3 0 -5.76467474254498 LTS-020 chr14 60394710 62242889 1848180 * c(HIF1A-AS2, SLC38A6, TMEM30B, HIF1A, C14orf39, LRRC9, FLJ22447, MNAT1, SIX6, DHRS7, SIX4, PPM1A, PRKCH, TRMT5, PCNX4, SIX1, SNAPC1) 0.206189730477698 15 0.225107233705776 0.932458700176237 1753 0.338692199543005 3 3 0 -6.78021845912286 LTS-020 chr14 62242890 62568192 325303 * c(SNAPC1, SYT16) 0.441 1 NA 0.904395038441831 117 0.261895589376278 3 3 0 -5.77277235800955 LTS-020 chr14 62568193 73989983 11421791 * c(MED6, LOC100289511, LOC100506321, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, WDR89, GPHB5, RDH12, ADAM21P1, PPP1R36, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ESR2, ZBTB1, PCNX1, SYNE2, FNTB, ZFYVE26, TTC9, FUT8, PLEKHG3, SIPA1L1, DCAF4, PLEK2, KCNH5, GPX2, ADAM20P1, SNORD56B, HSPA2, RAB15, ARG2, HEATR4, PLEKHD1, MAX, MAP3K9, LINC00238, TEX21P, MTHFD1, RDH11, COX16, ATP6V1D, NA NA NA NA NA NA NA NA NA LTS-020 PIGH, ZFYVE1, EXD2, PPP2R5E, SYNJ2BP, SLC39A9, PSEN1, CCDC177, RHOJ, GALNT16, PLEKHH1, RBM25, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, LINC00643, SLC8A3, SLC10A1, SPTB, ZFP36L1, ZBTB25, DPF3, SGPP1, SYT16, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, CHURC1, AKAP5, RGS6, SUSD6) 0.42240385243044 155 0.121026097584804 0.965096304567168 8414 0.285852212820609 3 2 1 -6.87289819108492 LTS-020 NA NA NA NA LTS-020 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.08 1 NA NA NA NA NA LTS-020 chr14 74003792 74010368 6577 * c(HEATR4, ACOT1) NA 0 NA 0.195375822344278 40 0.282043731833676 0 NA NA -5.77044456414398 LTS-020 chr14 74010369 74010467 99 * c(HEATR4, ACOT1) NA 0 NA 0.094 1 NA NA NA NA NA LTS-020 chr14 74010468 74058419 47952 * c(ACOT2, ACOT4, HEATR4, ACOT1) 0.466268709798086 2 0.0183847763108503 0.696917812101156 48 0.50914382268751 2 1 1 -11.0414887301962 LTS-020 chr14 74058420 76525515 2467096 * c(MIR4505, MIR4709, BATF, NPC2, TMED10, C14orf1, IFT43, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, DLST, TTLL5, FOS, MLH3, PROX2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, YLPM1, ZNF410, ABCD4, ACOT6, SYNDIG1L, TGFB3, LINC01220, ZC2HC1C, BBOF1, DNAL1, RPS6KL1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, ENTPD5, ACYP1, AREL1) 0.441355300124157 91 0.110220509360829 0.965726584814512 4053 0.737958183465965 4 2 2 -6.95570004486061 LTS-020 chr14 76525516 76525553 38 * IFT43 0.432 1 NA 2.058 1 NA NA NA NA NA LTS-020 chr14 76525554 89063167 12537614 * c(MIR1260A, DIO2-AS1, LINC00911, AHSA1, PTPN21, IFT43, NOXRED1, LRRC74A, ISM2, CEP128, SAMD15, DIO2, ESRRB, VASH1, SNW1, ANGEL1, FLRT2, GALC, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, KCNK10, GPATCH2L, SPATA7, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TSHR, ZC3H14, SLIRP, GPR65, STON2, CIPC, ALKBH1, NRXN3, SPTLC2) 0.43019984764403 120 0.120275314135845 1.0009967969881 4486 0.28868109882774 3 2 1 -7.09729552592099 LTS-020 chr14 89063168 89081257 18090 * c(EML5, ZC3H14) 0 1 NA 0.931747190622387 107 0.523327364652615 3 3 0 -5.76443382783269 LTS-020 chr14 89081258 90449481 1368224 * c(FOXN3, TTC8, EML5, FOXN3-AS2, FOXN3-AS1, TDP1, EFCAB11) 0.374126944449604 11 0.22276493930109 0.951124292225845 699 0.228280913951699 3 2 1 -6.73418686676312 LTS-020 chr14 90449482 90456188 6707 * TDP1 0.491 1 NA 1.12535174853404 23 0.310810504906887 4 4 0 -5.76450634050163 LTS-020 chr14 90456189 106054770 15598582 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, FBLN5, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, TC2N, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, NA NA NA NA NA NA NA NA NA LTS-020 PRIMA1, TTC7B, SYNE3, DIO3, DYNC1H1, LINC00638, EIF5, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, LINC00642, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MIR154, MIR203A, MIR299, MARK3, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, LGMN, KCNK13, C14orf132, PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, CATSPERB, RIN3, C14orf159, CALM1, TMEM121, GPR68, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, RPS6KA5, TRIP11, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.440088906693029 361 0.103304697280171 0.989147430363162 15789 0.276437962816149 3 2 1 -7.18046519516773 LTS-020 NA NA NA NA LTS-020 chr14 106054771 106066404 11634 * character(0) NA 0 NA 1.181 1 NA NA NA NA NA LTS-020 chr14 106066405 106175039 108635 * ELK2AP 0.363281913737887 2 0.1209152595829 1.35877048104229 75 0.242649473205377 5 3 2 -6.75261389415307 LTS-020 chr14 106175040 106188132 13093 * character(0) NA 0 NA 0.819 1 NA NA NA NA NA LTS-020 chr14 106188133 106667810 479678 * c(ADAM6, FAM30A) 0.422632305627493 18 0.121959491828471 0.889851362875126 393 0.394131293894063 2 1 1 -6.8418967026411 LTS-020 chr14 106667811 106691778 23968 * character(0) 0.359 1 NA 1.04480273698367 7 0.479548547619331 3 3 0 -5.76491739172529 LTS-020 chr14 106691779 107013201 321423 * c(LINC00226, LINC00221) 0.314660093918143 18 0.104174187963759 1.11524935895168 159 0.669237492190736 4 3 1 -6.7376903929992 LTS-020 chr14 107013202 107179263 166062 * character(0) 0.335688178807186 18 0.0993460315610448 1.53889056810767 72 0.520770981807702 6 4 2 -6.74956507724902 LTS-020 chr14 107179264 107198951 19688 * character(0) NA 0 NA 0.902 1 NA NA NA NA NA LTS-020 chr14 107198952 107282988 84037 * character(0) 0.253879781284504 2 0.0346482322781408 0.959803737285732 42 0.358496321682243 5 4 1 -6.80789504692413 LTS-020 chr14 107282989 107283157 169 * character(0) NA 0 NA 0.934245982510099 5 0.165264333720256 3 NA NA -5.76441188427018 LTS-020 chr15 20169987 20446043 276057 * character(0) 0.268 1 NA 1.05663115096535 23 0.367181520197713 3 3 0 -5.77699750503823 LTS-020 chr15 20446044 21936489 1490446 * c(POTEB, HERC2P3, LINC01193, NF1P2, NBEAP1, CHEK2P2, LOC646214, GOLGA6L6, GOLGA8CP) 0.391314100845533 9 0.0568770604022395 1.21787223285825 116 0.353414336407581 4 2 2 -6.74022648589939 LTS-020 chr15 21936490 22156760 220271 * c(POTEB, NF1P2, LOC646214, CXADRP2) NA 0 NA 2.995 1 NA NA NA NA NA LTS-020 chr15 22156761 22483192 326432 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.31668689156249 16 0.104150532083774 1.75341861018237 140 1.04621429016995 7 5 2 -6.73377064916541 LTS-020 chr15 22483193 22489860 6668 * character(0) NA 0 NA 1.039 1 NA NA NA NA NA LTS-020 chr15 22489861 23300185 810325 * c(GOLGA8DP, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, HERC2P2, REREP3, NIPA2) 0.43790926552161 5 0.0348783600531906 1.01322852183136 630 0.230139000547535 4 2 2 -7.81032148442222 LTS-020 chr15 23300186 23330357 30172 * HERC2P2 NA 0 NA 0.796 1 NA NA NA NA NA LTS-020 chr15 23330358 23685517 355160 * c(HERC2P7, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.401726882898422 2 0.0113137084989847 0.545585320381104 16 0.274482422023706 2 1 1 -7.32228298649851 LTS-020 chr15 23685518 23686062 545 * character(0) 0.237 1 NA 0.89623689391279 9 0.550840897577916 3 3 0 -5.76441444603138 LTS-020 chr15 23686063 25344852 1658790 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD116-26, MIR4508, NPAP1, SNORD109B, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, MKRN3, PWRN1, PWRN2, PWAR5, SNURF) 0.147211112641852 10 0.144154238385295 0.694213051744997 583 0.320492564214465 2 2 0 -6.81219293335085 LTS-020 chr15 25344853 25346645 1793 * c(SNORD116-26, SNORD109B, IPW) NA 0 NA 0.447 1 NA NA NA NA NA LTS-020 chr15 25346646 34678938 9332293 * c(SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, NA NA NA NA NA NA NA NA NA LTS-020 SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, WHAMMP1, LOC100288637, LOC100289656, MIR1233-2, MIR4715, TMCO5B, LOC100996255, CHRM5, CHRNA7, PWAR1, OTUD7A, PGBD4, FAN1, GOLGA8A, FAM189A1, LPCAT4, GABRA5, GABRB3, NUTM1, GABRG3, DKFZP434L187, GREM1, LOC283710, APBA2, SNORD109B, SNORD115-1, FMN1, PWAR4, IPW, HERC2P10, MIR211, TRPM1, HERC2P9, WHAMMP2, OCA2, LINC00929, EMC4, KLF13, MTMR10, NOP10, NSMCE3, EMC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 AVEN, ATP10A, RYR3, SCG5, PDCD6IPP2, GOLGA8T, TJP1, GOLGA8O, GOLGA6L7P, UBE3A, KATNBL1, HERC2, CHRFAM7A, ARHGAP11B, ARHGAP11A, SLC12A6) 0.205429123622097 131 0.0775977568066308 0.634289168130802 4910 0.219077455784648 2 2 0 -8.4329648970437 LTS-020 NA NA NA NA LTS-020 chr15 34678939 34781179 102241 * c(MIR1233-2, GOLGA8A) NA 0 NA 0.095 1 NA NA NA NA NA LTS-020 chr15 34781180 34819918 38739 * c(MIR1233-2, GOLGA8B) NA 0 NA 0.124393525911917 51 0.0412887773766056 0 NA NA -9.85646339364787 LTS-020 chr15 34819919 34819923 5 * c(MIR1233-2, GOLGA8B) NA 0 NA 0.331 1 NA NA NA NA NA LTS-020 chr15 34819924 43028749 8208826 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, OIP5, PLA2G4E, LOC145845, TMCO5A, CDAN1, CSNK1A1P1, SPRED1, EXD1, FSIP1, RHOV, BAHD1, MAPKBP1, RTF1, MGA, VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, FAM98B, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, GOLGA8B, EIF2AK4, NDUFAF1, NA NA NA NA NA NA NA NA NA LTS-020 NUSAP1, SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, ZNF770, HAUS2, RMDN3, DNAJC17, PAK6, KNL1, GJD2, STARD9, VPS18, RAD51, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF, AQR) 0.207692321976884 147 0.0806148415563403 0.633453718300695 8793 0.203153302515826 2 2 0 -8.49187576566938 LTS-020 NA NA NA NA LTS-020 chr15 43028750 43170793 142044 * c(TTBK2, CDAN1) 0.129 1 NA 0.622707962619612 153 0.158456119898427 2 2 0 -5.84735502270738 LTS-020 chr15 43170794 44962188 1791395 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, ZSCAN29, TTBK2, STRC, ADAL, UBR1, PATL2, EPB42, CCNDBP1, HYPK, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, SERINC4, EIF3J-AS1, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, FRMD5, EIF3J, TGM5, PPIP5K1, LCMT2) 0.166650037735188 43 0.107840562556245 0.628166688065343 3205 0.219982361741503 2 2 0 -7.21959884334941 LTS-020 chr15 44962189 45059909 97721 * c(TRIM69, PATL2, B2M) NA 0 NA 0.638685567911995 154 0.108181334279511 2 NA NA -5.85055140790253 LTS-020 chr15 45059910 45127455 67546 * TRIM69 NA 0 NA 0.309229611540128 39 0.248281551358411 0 NA NA -5.77238094723717 LTS-020 chr15 45127456 45139649 12194 * character(0) NA 0 NA 0.741 1 NA NA NA NA NA LTS-020 chr15 45139650 45365724 226075 * c(TERB2, SORD) 0.433 1 NA 0.632675232384729 109 0.188216589437768 2 2 0 -5.84014237204212 LTS-020 chr15 45365725 45366583 859 * SORD 0.394271035888584 12 0.0378873929619675 1.09385951711241 30 0.919248258589343 4 2 2 -6.73408903531097 LTS-020 chr15 45366584 45366822 239 * SORD 0.254 1 NA 0.696642190608491 7 0.0436801142506791 2 2 0 -5.76456313490132 LTS-020 chr15 45366823 45981317 614495 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, DUOXA2, DUOX2, DUOX1, SQRDL, SORD, SLC30A4, SPATA5L1, C15orf48, SHF, DUOXA1, SLC28A2) 0.203987848940529 31 0.0786085442290242 0.638903091145475 1174 0.177718720308576 2 2 0 -6.9440149846989 LTS-020 chr15 45981318 45983585 2268 * SQRDL NA 0 NA 0.626542093687398 15 0.0968145994500141 2 NA NA -5.7677289662725 LTS-020 chr15 47873448 47873605 158 * SEMA6D 0.183 1 NA 1.47732840425894 5 1.25531776853512 5 5 0 -5.76441027809042 LTS-020 chr15 47873606 48787842 914237 * c(DUT, FBN1, SLC24A5, CTXN2, MYEF2, SLC12A1, SEMA6D) 0.133292483921889 10 0.0556601792626969 1.0098714536218 1173 0.264670608141885 3 3 0 -6.79158689039734 LTS-020 chr15 48787843 48788289 447 * FBN1 NA 0 NA 0.935 1 NA NA NA NA NA LTS-020 chr15 48788290 59377998 10589709 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, ADAM10, GNB5, ARPP19, SLC27A2, LEO1, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, PRTG, LINC00926, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, AQP9, USP50, TEX9, TNFAIP8L3, LIPC, SHC4, UNC13C, MYO5A, NEDD4, NA NA NA NA NA NA NA NA NA LTS-020 RSL24D1, FAM63B, RNF111, ZNF280D, TRPM7, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, RFX7, HSP90AB4P, MIR628, TCF12, SLTM, ATP8B4, POLR2M, SPPL2A, CGNL1, ALDH1A2, USP8, CCPG1, COPS2, PIGB, SECISBP2L) 0.133320032625899 177 0.0688672970985204 0.958405500590062 8111 0.331145275786342 3 3 0 -6.756037657256 LTS-020 NA NA NA NA LTS-020 chr15 59377999 59381830 3832 * RNF111 NA 0 NA 1.666 1 NA NA NA NA NA LTS-020 chr15 59381831 59389511 7681 * RNF111 NA 0 NA 1.42350421184079 67 0.182173939377042 5 NA NA -5.76442970152446 LTS-020 chr15 59389512 59397245 7734 * RNF111 NA 0 NA 0.927 1 NA NA NA NA NA LTS-020 chr15 59397246 60885302 1488057 * c(MIR2116, FAM81A, FOXB1, GTF2A2, ANXA2, MYO1E, RORA, BNIP2, ICE2, CCNB2, GCNT3, LDHAL6B) 0.110023640198138 13 0.056811090466563 0.924713002071089 1231 0.310470291275526 3 3 0 -6.9813043804061 LTS-020 chr15 60885303 62929444 2044142 * c(C2CD4A, MGC15885, C2CD4B, VPS13C, RORA) 0 1 NA 1.39041863378016 583 0.375411175199637 5 5 0 -5.76559014485767 LTS-020 chr15 62929445 63009733 80289 * c(MGC15885, TLN2) 0.393 1 NA 1.41245394964721 163 0.301853524752008 5 5 0 -5.76441892743071 LTS-020 chr15 63009734 73848808 10839075 * c(NR2E3, USP3-AS1, HCN4, ADPGK-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, IQCH-AS1, MIR4511, PDCD7, FEM1B, DENND4A, SNAPC5, CORO2B, CLPX, LACTB, DIS3L, SENP8, MTFMT, SLC51B, HIGD2B, DRAIC, C15orf61, CT62, GRAMD2, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, ARIH1, GLCE, EWSAT1, REC114, FBXL22, HEXA, TMEM202, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, SKOR1, MIR190A, SMAD3, SMAD6, LINC00593, MYO9A, NEO1, OAZ2, RPS27L, NA NA NA NA NA NA NA NA NA LTS-020 RASL12, SPG21, HACD3, RAB8B, PKM, CSNK1G1, PPIB, LRRC49, PAQR5, DPP8, PARP16, TIPIN, CLN6, ZWILCH, UACA, LARP6, GOLGA6B, MAP2K1, MAP2K5, THAP10, PARP6, IGDCC4, BBS4, SNORD16, SNORD18A, SNORD18B, SNORD18C, CELF6, RPL4, RPLP1, IQCH, SNX1, SCARNA14, MIR629, MIR630, TLE3, TPM1, CA12, NOX5, AAGAB, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, PLEKHO2, ANP32A, VWA9, ADPGK, APH1B, TLN2, FAM96A, MEGF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CILP, PIAS1, RAB11A, HERC1, CALML4, SLC24A1, TRIP4, KIF23, IGDCC3, KIAA0101, USP3) 0.333778370293145 141 0.117073941165835 1.3258403505613 10249 0.339480905037485 5 3 2 -7.03472585799523 LTS-020 NA NA NA NA LTS-020 chr15 73848809 73884530 35722 * c(NPTN, REC114) NA 0 NA 1.39432812142688 42 0.284123494767233 5 NA NA -5.76443087175814 LTS-020 chr15 73884531 73889317 4787 * NPTN NA 0 NA 0.674 1 NA NA NA NA NA LTS-020 chr15 73889318 73925782 36465 * NPTN 0.404 1 NA 0.899508199602298 15 0.272350841659028 3 3 0 -5.76545996060586 LTS-020 chr15 73925783 78789676 4863894 * c(DNM1P35, LOXL1-AS1, MIR4313, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, ARID3B, CLK3, TMEM266, CRABP1, CSK, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, LOC283731, IDH3A, GOLGA6A, IREB2, ISLR, C15orf59, LOXL1, MAN2C1, MPI, UBL7-AS1, SCAPER, PML, RPP25, COMMD4, IMP3, DNAJA4, C15orf39, FAM219B, ISLR2, PTPN9, NA NA NA NA NA NA NA NA NA LTS-020 CPLX3, RCN2, PPCDC, STRA6, LOC645752, SH2D7, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, CD276, LINC00597, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A, STOML1) 0.441745936129853 114 0.090057947240661 0.970311472659238 5609 0.831105902997486 4 2 2 -7.06456484553608 LTS-020 NA NA NA NA LTS-020 chr15 78789677 78792488 2812 * IREB2 0 1 NA 1.00311383222813 39 0.350000196645405 3 3 0 -5.76444366760498 LTS-020 chr15 78792489 79764056 971568 * c(MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, HYKK, CTSH, KIAA1024, TMED3, IREB2, ANKRD34C, MIR184, PSMA4, RASGRF1, LOC646938, ANKRD34C-AS1) 0.374713722359886 26 0.169628281386548 0.989281257110893 1094 0.376937207482229 3 2 1 -6.73999563208416 LTS-020 chr15 79764057 80216165 452109 * c(ST20-MTHFS, MTHFS, KIAA1024, ST20-AS1, ST20) 0.491 1 NA 0.950824340825241 71 0.169779162988603 3 3 0 -5.76457483820009 LTS-020 chr15 80216166 101606261 21390096 * c(NA, UBE2Q2P2, LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR4514, MIR3529, MIR4515, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, AKAP13, C15orf40, LRRC28, AGBL1, WHAMM, FSD2, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, LINC00052, CFAP161, ADAMTS17, ACAN, DNM1P46, CERS3, FAH, ALDH1A3, FES, MESDC2, SYNM, NA NA NA NA NA NA NA NA NA LTS-020 SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, FAM169B, ANPEP, LOC338963, IDH2, TMC3, ZNF774, IGF1R, ARPIN, IL16, ISG20, GOLGA6L5P, KIF7, ZNF710, HDDC3, GOLGA2P7, UBE2Q2P1, SPATA41, GDPGP1, ADAMTS7P1, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, NMB, NTRK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 FURIN, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, LINS1, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, ADAMTSL3, CEMIP, ALPK3, ABHD17C, MESDC1, BCL2A1, RLBP1, BLM, LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, BNC1, GOLGA6L10, AEN, CRTC3, EFTUD1P1, TTC23, MRPS11, SCARNA15, MIR549A, NR2F2, HSP90B2P, AGBL1-AS1, ASB9P1, EFL1, LRRK1, STARD5, AP3B2, ST8SIA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 FAM103A1, MEX3B, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ARRDC4, LINC00923, HOMER2, ZNF592, SV2B, ARNT2) 0.437685268540141 343 0.101304588971307 0.983830392210138 12977 0.325885217916674 3 2 1 -7.1303933488316 LTS-020 NA NA NA NA LTS-020 chr15 101606262 101606889 628 * LRRK1 0.062 1 NA 0.748250912402587 8 0.234392223176696 2 2 0 -5.76441485394771 LTS-020 chr15 101606890 102177088 570199 * c(LOC100507472, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.359121625305614 9 0.198201917246025 0.916199837997794 428 0.210875082559102 3 2 1 -6.74671153510572 LTS-020 chr15 102177089 102191869 14781 * TM2D3 0.471 1 NA 0.851120577119503 45 0.156497345638574 3 3 0 -5.76919150249035 LTS-020 chr15 102191870 102516492 324623 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, TM2D3) 0.44605266292617 10 0.0850208471167186 0.954691596036991 268 0.219254059002742 4 2 2 -7.13824448762323 LTS-020 chr15 102516493 102516544 52 * WASH3P NA 0 NA 0.837 1 NA NA NA NA NA LTS-020 chr16 81704 81779 76 * character(0) 0.495 1 NA 1.699 1 NA NA NA NA NA LTS-020 chr16 81780 2653223 2571444 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-020 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.444967743350064 253 0.0631556223202208 0.960509562522281 8219 0.293071125343046 3 2 1 -7.56083249564731 LTS-020 NA NA NA NA LTS-020 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.004 1 NA NA NA NA NA LTS-020 chr16 2672647 2732840 60194 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.361 1 NA 0.586287665695289 78 0.41569079513845 1 1 0 -5.7693235821201 LTS-020 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.834 1 NA NA NA NA NA LTS-020 chr16 2747831 6533549 3785719 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, EEF2KMT, NLRC3, CLUAP1, MGRN1, SRRM2, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, MEFV, SMIM22, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, KCTD5, RBFOX1, NA NA NA NA NA NA NA NA NA LTS-020 ZSCAN32, PPL, HCFC1R1, ALG1, NMRAL1, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, SEC14L5) 0.450009644374297 109 0.0839672130323739 0.972618738204337 4962 0.350891588091587 3 2 1 -7.29400058917198 LTS-020 NA NA NA NA LTS-020 chr16 6533550 7637329 1103780 * RBFOX1 0 1 NA 1.08512676366432 43 0.521942714405239 4 4 0 -5.78170175357661 LTS-020 chr16 7637330 10527432 2890103 * c(MIR548X, ABAT, CARHSP1, TMEM186, TMEM114, GRIN2A, C16orf72, PMM2, RBFOX1, USP7, METTL22, ATF7IP2) 0.283736503094217 16 0.229990860325651 1.01638245449151 1168 0.383047439415707 3 2 1 -6.85353390865142 LTS-020 chr16 10527433 10623304 95872 * c(EMP2, ATF7IP2) 0.424 1 NA 1.03619666273325 101 0.288902453988872 3 3 0 -5.76901802509245 LTS-020 chr16 10623305 11836508 1213204 * c(RMI2, TEKT5, EMP2, CLEC16A, DEXI, CIITA, NUBP1, TXNDC11, PRM1, PRM2, PRM3, TNP2, TVP23A, SNN, SOCS1, LITAF) 0.463099403599446 32 0.025861428964087 0.949375866145944 1012 0.219283454478012 4 2 2 -10.1066612548948 LTS-020 chr16 11836509 11858895 22387 * c(ZC3H7A, TXNDC11) 0 1 NA 0.87941641741747 59 0.165638662664421 3 3 0 -5.76772055049103 LTS-020 chr16 11858896 14576662 2717767 * c(MIR365A, MIR4718, ERCC4, RSL1D1, ZC3H7A, GSPT1, BCAR4, PARN, CPPED1, MIR193B, MKL2, TNFRSF17, SHISA9, SNX29) 0.392963669095474 29 0.126134282187109 0.964597286009169 871 0.32135123428715 3 2 1 -6.76319508073086 LTS-020 chr16 14576663 14645850 69188 * PARN NA 0 NA 0.582 1 NA NA NA NA NA LTS-020 chr16 14645851 14766657 120807 * c(PARN, BFAR, PLA2G10) 0.260442154451571 2 0.00989949493661167 0.634429210484054 165 0.147947644601857 1 1 0 -8.07051964674813 LTS-020 chr16 14766658 14772607 5950 * PLA2G10 NA 0 NA 0.924 1 NA NA NA NA NA LTS-020 chr16 14772608 15123936 351329 * c(PDXDC1, NOMO1, NPIPA3, ABCC6P2, PLA2G10, NPIPA1) 0.409340400204619 6 0.130318711882318 0.883037625784659 145 0.197625907293848 3 2 1 -6.83326904303994 LTS-020 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.502 1 NA NA NA NA NA LTS-020 chr16 15125636 15186413 60778 * c(NTAN1, PDXDC1, RRN3) 0.227351758154448 5 0.0451851745598045 0.62829953835995 192 0.172959857933481 2 2 0 -7.11438934610925 LTS-020 chr16 15186414 15187939 1526 * c(PDXDC1, RRN3) NA 0 NA 0.917 1 NA NA NA NA NA LTS-020 chr16 15187940 15705617 517678 * c(NPIPA5, MIR3180-4, PDXDC1, MPV17L, RRN3, C16orf45, KIAA0430) 0.361745813199458 5 0.209590553222229 0.984044114376969 247 0.278744284939723 3 2 1 -6.73684533565027 LTS-020 chr16 15705618 15771601 65984 * c(NDE1, MIR484, KIAA0430) 0.484 1 NA 0.951482026888081 131 0.192528165878368 3 3 0 -5.76442315925667 LTS-020 chr16 15771602 20548251 4776650 * c(MIR3179-2, COQ7, FOPNL, ACSM2A, IQCK, GPR139, ITPRIPL2, PDILT, SMG1, ARL6IP1, GP2, NOMO2, PKD1P1, ACSM2B, ABCC6, KNOP1, NOMO3, ABCC1, MYH11, GDE1, GPRC5B, SYT17, NDE1, ACSM5, C16orf62, RPS15A, XYLT1, ABCC6P1, CLEC19A, UMOD, TMC5, TMC7, CCP110) 0.442027926854376 65 0.0848730245040292 1.00258560835495 2877 0.313599460341747 3 2 1 -7.25483082243582 LTS-020 chr16 20548252 20807812 259561 * c(ERI2, ACSM1, ACSM2B, THUMPD1, ACSM3) 0 1 NA 1.00092525352944 289 0.239545913631606 3 3 0 -5.77044205120507 LTS-020 chr16 20807813 22126676 1318864 * c(LOC100190986, SMG1P3, SNX29P1, IGSF6, ERI2, DCUN1D3, CRYM, VWA3A, OTOA, NPIPB3, PDZD9, ANKS4B, SLC7A5P2, CRYM-AS1, METTL9, DNAH3, TMEM159, LYRM1, ACSM3, RRN3P1, C16orf52, UQCRC2, ZP2, LOC81691) 0.300669260098851 24 0.207054638171681 0.969128608533135 1408 0.309839775376942 3 2 1 -6.79292439155798 LTS-020 chr16 22126677 22149909 23233 * VWA3A 0.494 1 NA 0.999792785320335 73 0.249046835160579 3 3 0 -5.76488636883008 LTS-020 chr16 22149910 28608392 6458483 * c(RRN3P3, NPIPB5, MIR548AA2, LCMT1-AS2, CACNG3, CDR2, ERN2, SGF29, SLC5A11, CLN3, EARS2, VWA3A, GSG1L, C16orf82, NSMCE1, GGA2, XPO6, KIAA0556, IL27, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, NDUFAB1, IL21R, LCMT1, PLK1, ARHGAP17, LOC554206, POLR3E, PRKCB, APOBR, UBFD1, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, PALB2, KDM8, DCTN5, NA NA NA NA NA NA NA NA NA LTS-020 COG7, HS3ST4, HS3ST2) 0.420275664164289 99 0.136549385549249 0.978531096700729 4484 0.308898323901801 3 2 1 -6.85276852365628 LTS-020 NA NA NA NA LTS-020 chr16 28608393 28712734 104342 * SULT1A1 0.455428571428571 2 0.0403050865276332 0.556328802311601 77 0.300862476332745 2 1 1 -7.96876557066989 LTS-020 chr16 28712735 28734495 21761 * character(0) NA 0 NA 1.131 1 NA NA NA NA NA LTS-020 chr16 28734496 28950051 215556 * c(ATP2A1-AS1, MIR4721, ATXN2L, SH2B1, ATP2A1, TUFM, RABEP2, CD19) 0.46686534612534 7 0.0347316241239265 1.00771853497006 551 0.18598536955941 4 2 2 -8.77059944250978 LTS-020 chr16 28950052 28976565 26514 * c(MIR4517, NFATC2IP, CD19) 0 1 NA 1.05151804446982 81 0.560609729515249 3 3 0 -5.76488122560268 LTS-020 chr16 28976566 29367177 390612 * c(LAT, SNX29P2, RRN3P2, SPNS1, NFATC2IP) 0.476188451222591 2 0.0113137084989848 0.951766218947533 220 0.228461427211546 4 2 2 -14.3633844618114 LTS-020 chr16 29367178 29624350 257173 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.422903996338349 41 0.362381619021824 1 NA NA -5.79948391850335 LTS-020 chr16 29624351 29624403 53 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.279 1 NA NA NA NA NA LTS-020 chr16 29624404 29989739 365336 * c(SLX1B-SULT1A4, CDIPT, PRRT2, TMEM219, QPRT, KCTD13, ASPHD1, SEZ6L2, C16orf54, KIF22, MAZ, SMG1P2, CDIPT-AS1, SLX1A, BOLA2, LOC606724, LOC613038, ZG16, SPN, PAGR1, SLC7A5P1, TAOK2, MVP) 0.245554459093891 7 0.231202549829406 0.978165146743575 851 0.32342021494509 3 3 0 -6.84222254341157 LTS-020 chr16 29989740 29994398 4659 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, TAOK2) 0.441 1 NA 0.990078591870649 33 0.239668489477622 3 3 0 -5.76447414553045 LTS-020 chr16 29994399 30670388 675990 * c(SLX1B-SULT1A4, MIR4518, CD2BP2, CORO1A, ZNF689, C16orf92, ZNF785, ZNF688, SEPT1, ZNF48, ALDOA, SEPHS2, TBC1D10B, INO80E, MYLPF, ITGAL, SMG1P2, SULT1A4, ZNF771, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, LOC613038, ZNF747, TBX6, PRR14, DCTPP1, GDPD3, ZNF768, YPEL3, FAM57B, DOC2A, HIRIP3, ZNF764, TAOK2) 0.458492181895153 29 0.0415821046674099 0.972052386658608 1747 0.208176838323516 4 2 2 -8.28603301378121 LTS-020 chr16 30670389 30722924 52536 * c(SRCAP, FBRS, SNORA30, LOC730183) 0 1 NA 1.01910790941796 187 0.298399338375423 3 3 0 -5.7659132469267 LTS-020 chr16 30722925 32001859 1278935 * c(CLUHP3, MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, ZNF267, SRCAP, STX1B, ZNF720, COX6A2, PRSS36, CTF1, ZNF629, FUS, PYDC1, FBXL19-AS1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAM, ITGAX, YBX3P1, TRIM72, AHSP, PHKG2, FBXL19, PRSS8, C16orf58, SLC5A2, STX4, TGFB1I1, VKORC1, ZNF668, ARMC5, HSD3B7, KAT8, CCDC189, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.419807326737468 11 0.142947097652498 0.977173662032913 2922 0.226803833816081 3 2 1 -6.82670962200853 LTS-020 chr16 32001860 32013405 11546 * character(0) NA 0 NA 0.702 1 NA NA NA NA NA LTS-020 chr16 32013406 32893344 879939 * c(SLC6A10P, LOC390705, NA, TP53TG3D) NA 0 NA 0.637072934189892 53 0.165569556196307 2 NA NA -6.09449919445485 LTS-020 chr16 32893345 32893865 521 * c(SLC6A10P, LOC390705) NA 0 NA 1.087 1 NA NA NA NA NA LTS-020 chr16 32893866 33962291 1068426 * c(SLC6A10P, LOC390705, LINC00273) 0.34735458428947 77 0.0853613964912503 1.01649250810467 232 0.623375624426975 3 2 1 -6.7661719027651 LTS-020 chr16 33962292 33962298 7 * LINC00273 0.257 1 NA 0.231 1 NA NA NA NA NA LTS-020 chr16 33962299 34301582 339284 * LINC00273 0.254977388171352 11 0.125621726551653 0.786875978017292 86 0.321423543829701 2 2 0 -6.8936955501537 LTS-020 chr16 34301583 34682380 380798 * c(LINC01566, UBE2MP1) NA 0 NA 1.04047295013358 56 0.249429510121558 3 NA NA -5.79139747807663 LTS-020 chr16 46508169 46508314 146 * ANKRD26P1 0.39 1 NA 1.0774309061233 3 0.962585580610888 4 4 0 -5.76441092208743 LTS-020 chr16 46508315 48226479 1718165 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, GPT2, ABCC11, MYLK3, ABCC12) 0.239491046798713 9 0.235658003141087 0.998359025356001 1360 0.288860896595805 3 3 0 -6.84933442757704 LTS-020 chr16 48226480 48234381 7902 * ABCC11 0.477 1 NA 1.04348869531111 21 0.135829269585721 3 3 0 -5.76643615258729 LTS-020 chr16 48234382 50100253 1865872 * c(LOC100507577, MIR548AE2, C16orf78, ZNF423, CNEP1R1, HEATR3, SIAH1, LONP2, ABCC11, CBLN1, N4BP1) 0.46083107173497 15 0.0251333585954148 0.967488536128324 607 0.235397870006006 4 2 2 -10.1567979549938 LTS-020 chr16 50100254 50104266 4013 * HEATR3 0 1 NA 1.1163218869971 13 0.918023098977586 4 4 0 -5.76441912960447 LTS-020 chr16 50104267 50668474 564208 * c(ADCY7, BRD7, HEATR3, PAPD5, NKD1) 0.243634724163953 9 0.217595955844772 0.940566126800957 503 0.429939969089574 3 3 0 -6.85047670863108 LTS-020 chr16 50668475 50670182 1708 * NKD1 0.466 1 NA 1.13336231526608 39 0.28175292341261 4 4 0 -5.76443178843816 LTS-020 chr16 50670183 53513055 2842873 * c(LINC00919, SNX20, CYLD, TOX3, C16orf97, RBL2, SALL1, NOD2, CASC16, LOC643802, CHD9, NKD1) 0.453094847451412 28 0.0929454738602753 0.97590307327007 1012 0.240002868584692 3 2 1 -7.23873189038729 LTS-020 chr16 53513056 53513780 725 * RBL2 0 1 NA 1.15235817047771 5 0.571701670454093 4 4 0 -5.76441092244606 LTS-020 chr16 53513781 54148802 635022 * c(RPGRIP1L, RBL2, AKTIP, FTO) 0.284364927088943 9 0.246876881146138 0.954321468186243 363 0.335804434532706 3 2 1 -6.79698362256029 LTS-020 chr16 54148803 54149532 730 * character(0) 0.436 1 NA 1.13656335052376 17 0.209093544362607 4 4 0 -5.76442469356579 LTS-020 chr16 54149533 55690425 1540893 * c(IRX5, MMP2, LPCAT2, CRNDE, SLC6A2, IRX6, IRX3, CAPNS2) 0.461616548921454 32 0.0379003228984458 1.0423086086092 668 0.28420237445796 4 2 2 -8.42940995368114 LTS-020 chr16 55690426 55735912 45487 * SLC6A2 0.477 1 NA 1.00792717150294 69 0.409943100037727 3 3 0 -5.76488607963334 LTS-020 chr16 55735913 55813610 77698 * c(CES1P2, CES1P1, SLC6A2) NA 0 NA 0.931994372694798 50 0.319012699510505 3 NA NA -5.76467808369601 LTS-020 chr16 55813611 55813658 48 * character(0) 0 1 NA 2.032 1 NA NA NA NA NA LTS-020 chr16 55813659 55867046 53388 * CES1 0.198940158473133 4 0.169181362251678 1.39870863710381 58 0.412600824173793 7 6 1 -6.74823301836742 LTS-020 chr16 55867047 55880040 12994 * CES1 NA 0 NA 0.948 1 NA NA NA NA NA LTS-020 chr16 55880041 56501045 621005 * c(MIR3935, NUDT21, CES5A, DKFZP434H168, AMFR, GNAO1, LOC283856, OGFOD1) 0.352346388714198 4 0.227045516728842 0.972565869627582 432 0.334080497498689 3 2 1 -6.73614439107032 LTS-020 chr16 56501046 56660906 159861 * c(MT1A, MT1E, MT1M, MT1L, MT2A, MT3, OGFOD1, BBS2, MT4) 0.491 1 NA 0.961281454798522 237 0.198162267893744 3 3 0 -5.7645215664103 LTS-020 chr16 56660907 66975195 10314289 * c(CDH5, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, KATNB1, CETP, CMTM1, CMTM3, CNGB1, CSNK2A2, CMTM4, CMTM2, BEAN1, DYNC1LI2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, GOT2, TERB1, LINC00922, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1X, PLLP, CKLF, FAM96B, POLR2C, SLC38A7, DOK4, COQ9, CIAPIN1, PDP2, ZNF319, RRAD, CCL17, NA NA NA NA NA NA NA NA NA LTS-020 CCL22, CX3CL1, MT1IP, APOOP5, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, TK2, CA7, USB1, SETD6, FAM192A, NLRC5, DRC7, CES2, NAE1, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.417400365578096 96 0.137630340137325 0.976306786996469 5088 0.259395975529152 3 2 1 -6.86273992155621 LTS-020 NA NA NA NA LTS-020 chr16 66975196 67134062 158867 * c(CES3, CES4A, CBFB, CES2) 0 1 NA 0.961572482703687 263 0.350816940856526 3 3 0 -5.76444870610139 LTS-020 chr16 67134063 68289831 1155769 * c(NUTF2, CTCF, NRN1L, CARMIL2, KCTD19, CTRL, AGRP, E2F4, EDC4, PLA2G15, PLEKHG4, LRRC29, EXOC3L1, TMEM208, FHOD1, ZDHHC1, HSD11B2, HSF4, C16orf86, LCAT, MIR328, NFATC3, PARD6A, TPPP3, DUS2, LRRC36, FBXL8, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, FAM65A, ELMO3, ESRP2, CENPT, C16orf70, GFOD2, ENKD1, B3GNT9, CBFB, TRADD, NOL3, ATP6V0D1) 0.297649771540613 12 0.230351049619067 0.963477992387983 3396 0.233351817789499 3 2 1 -6.78552327851028 LTS-020 chr16 68289832 68294800 4969 * PLA2G15 0.474 1 NA 0.921433269284055 39 0.156805138793207 3 3 0 -5.76456362276134 LTS-020 chr16 68294801 70068086 1773286 * c(CDH3, MIR1538, MIR1972-1, NFAT5, WWP2, ZFP90, TMED6, NQO1, PLA2G15, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, PRMT7, CHTF8, SMPD3, PDF, SNTB2, TERF2, TANGO6, CYB5B, SLC7A6OS, COG8, UTP4, SLC7A6, CDH1) 0.434167997062777 45 0.0936202678134096 0.962571547042068 2159 1.48441969945204 4 2 2 -6.86868281587989 LTS-020 chr16 70068087 70172890 104804 * c(PDXDC2P, CLEC18C, PDPR) 0.273 1 NA 0.950288427893512 72 0.649017906801486 3 3 0 -5.76441349908574 LTS-020 chr16 70172891 70874094 701204 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, PDPR, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.34664526724403 16 0.16006913870783 0.954545439561936 1317 0.240413516316908 3 2 1 -6.74125266605559 LTS-020 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 1.544 1 NA NA NA NA NA LTS-020 chr16 70883627 71209583 325957 * HYDIN 0.343436182667446 77 0.044678696482147 1.46825771540196 555 0.378680724126699 6 4 2 -6.76806027346971 LTS-020 chr16 71209584 71509796 300213 * c(HYDIN, CMTR2, ZNF19, ZNF23, CALB2) 0.458484825893609 8 0.0293257565972304 1.0077020123886 312 0.246665759726803 4 2 2 -8.89639211747276 LTS-020 chr16 71509797 71572174 62378 * c(CHST4, ZNF19, ZNF23) 0 1 NA 1.0257685457049 65 0.685945618008734 3 3 0 -5.76481884684489 LTS-020 chr16 71572175 72007399 435225 * c(SNORA70D, CHST4, AP1G1, PHLPP2, ATXN1L, PKD1L3, ZNF821, TAT, SNORD71, MARVELD3, IST1) 0.229883978981943 9 0.221630385502029 0.955264022533095 789 0.432218438444713 3 3 0 -6.81660446479883 LTS-020 chr16 72007400 72020134 12735 * PKD1L3 0.433 1 NA 0.926634857034021 33 0.130191161898048 3 3 0 -5.76481453643887 LTS-020 chr16 72020135 74341902 2321768 * c(LINC01568, DHODH, HCCAT5, HP, HPR, PKD1L3, ZFHX3, TXNL4B, PSMD7, PMFBP1, DHX38) 0.456315167072723 26 0.0432862564793954 0.985625421057405 987 0.229507271833097 4 2 2 -8.56915421192886 LTS-020 chr16 74341903 74343670 1768 * character(0) 0 1 NA 0.866700160154267 27 0.18261771756659 3 3 0 -5.76470812954707 LTS-020 chr16 74343671 74514241 170571 * c(GLG1, LOC283922, CLEC18B) 0.312897780630621 10 0.182537180383127 0.964964076200235 209 0.53847067815867 4 3 1 -6.7480024502267 LTS-020 chr16 74514242 74537591 23350 * GLG1 0.496 1 NA 0.938461750956022 35 0.205488624478135 3 3 0 -5.76450909496642 LTS-020 chr16 74537592 90161231 15623640 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, NA NA NA NA NA NA NA NA NA LTS-020 MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 BANP, RFWD3, ZDHHC7, CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.440288611200804 372 0.0911463572256092 0.944949245118321 10600 0.432334797720763 3 2 1 -7.11840252139346 LTS-020 NA NA NA NA LTS-020 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.022 1 NA NA NA NA NA LTS-020 chr17 6004 6115 112 * DOC2B 0.213 1 NA 0.681985249570533 3 0.0298161030317511 2 2 0 -5.76474119010062 LTS-020 chr17 6116 16648947 16642832 * c(MIR744, LOC100128288, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1288, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, TRIM16, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, NA NA NA NA NA NA NA NA NA LTS-020 CYB5D1, OVCA2, USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CLDN7, CRK, DNAH2, RTN4RL1, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, USP32P1, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, CENPV, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, SNORD49A, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, TBC1D26, RFLNB, ITGAE, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 LRRC75A, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, MEIS3P1, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, TRPV2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TTC19, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, ZNF286A, ZNF287, MIR497, ZNF624, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, CDRT15P2, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD49B, SNORD65, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBB, UBE2G1, TRPV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 YWHAE, ZNF18, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, DOC2B, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RPH3AL, FXR2, MPDU1, SPAG7, NCOR1, CD68, CCDC144A, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.202237941799856 442 0.0748563744503201 0.655328298578656 20894 0.22264966833958 2 2 0 -8.44016500552255 LTS-020 NA NA NA NA LTS-020 chr17 16648948 16649035 88 * c(USP32P1, CCDC144A) NA 0 NA 0.695 1 NA NA NA NA NA LTS-020 chr17 16649036 16734869 85834 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) 0.373746361216687 3 0.0640858798800485 1.21300646928358 39 0.435923991133642 5 3 2 -6.75552104632771 LTS-020 chr17 16734870 16796652 61783 * KRT16P2 NA 0 NA 0.552 1 NA NA NA NA NA LTS-020 chr17 16796653 18315385 1518733 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.206290794863656 52 0.0558807277290067 0.649968775826399 2709 0.157241799461072 2 2 0 -7.22286971120524 LTS-020 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.093 1 NA NA NA NA NA LTS-020 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.198 1 NA 0.148582799902935 66 0.146532990310774 0 0 0 -6.50806971191804 LTS-020 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 1.033 1 NA NA NA NA NA LTS-020 chr17 18483256 21117589 2634334 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, TMEM11, SPECC1, ULK2) 0.219007426945983 50 0.0938850708611984 0.6446829934577 2536 0.208822893983214 2 2 0 -7.2854439398548 LTS-020 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.448 1 NA 0.566666846662221 33 0.128126343304119 1 1 0 -5.80432387416227 LTS-020 chr17 21194770 22066835 872066 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.366303903322742 106 0.086191377462985 0.704054500115875 446 0.238787032011635 2 1 1 -6.79968961500911 LTS-020 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.57 1 NA NA NA NA NA LTS-020 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.191 1 NA 0.716823114022728 17 0.140598772063921 2 2 0 -5.76449055402214 LTS-020 chr17 25630389 27975282 2344894 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-020 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.186483697692479 42 0.0834479293366175 0.653847935693077 4174 0.182992032219928 2 2 0 -7.19395468044152 LTS-020 NA NA NA NA LTS-020 chr17 27975283 36214044 8238762 * c(MIR365B, MIR2909, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, DDX52, DUSP14, SYNRG, LRRC37B, RFFL, TMEM132E, SPACA3, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, AATF, PIGW, C17orf78, YWHAEP7, ACACA, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, CCL4L1, LHX1, LIG3, ASIC2, C17orf102, MIR193A, TBC1D3B, NA NA NA NA NA NA NA NA NA LTS-020 TBC1D3C, CCL3L3, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, NA, TADA2A, SNORD7, HNF1B, MIR632, TBC1D3H, ZNF207, MMP28, DHRS11, TEFM, GGNBP2, ATAD5, MRM1, MYO19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TAF15, NSRP1, RNF135, RAB11FIP4, SSH2, CDK5R1, ZNF830, SLFN11, RASL10B, ZNHIT3, GOSR1) 0.194688667078119 100 0.0931063994372117 0.622047890225875 7546 0.193450598708379 2 2 0 -8.96765451591237 LTS-020 NA NA NA NA LTS-020 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.187 1 NA NA NA NA NA LTS-020 chr17 36214814 36398171 183358 * c(YWHAEP7, LOC440434) 0.463 1 NA 0.414716136598445 70 0.382646397916548 1 1 0 -5.79221868375899 LTS-020 chr17 36398172 44360815 7962644 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-020 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.202783215671032 283 0.0695234854127225 0.655990445045287 15174 0.210007995148149 2 2 0 -7.75949346982217 LTS-020 NA NA NA NA LTS-020 chr17 44360816 44363223 2408 * character(0) NA 0 NA 0.459 1 NA NA NA NA NA LTS-020 chr17 44363224 44782233 419010 * character(0) 0.156 1 NA 0.37444955907162 56 0.202169639935595 1 1 0 -6.2568488919698 LTS-020 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.803 1 NA NA NA NA NA LTS-020 chr17 44788332 45214510 426179 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.199298090305285 8 0.040129922928978 0.637848605429236 291 0.18637432953548 2 2 0 -6.8834381259846 LTS-020 chr17 45214511 45216216 1706 * CDC27 0.417 1 NA 1.11725925949201 10 0.327587545550804 4 4 0 -5.76443926353048 LTS-020 chr17 45216217 45266571 50355 * CDC27 0.377657621955517 9 0.0751655580110406 0.658609667090438 82 0.202905332788653 2 1 1 -6.76443443046788 LTS-020 chr17 45266572 45364540 97969 * c(ITGB3, MYL4, CDC27) 0.211 1 NA 0.716408617369582 79 0.164167655613482 2 2 0 -5.76505793107833 LTS-020 chr17 45364541 47905162 2540622 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, NA NA NA NA NA NA NA NA NA LTS-020 FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1) 0.177386486278216 72 0.0725902977690782 0.676888348036561 3589 0.335850321354894 2 2 0 -6.82889171507712 LTS-020 NA NA NA NA LTS-020 chr17 47905163 48615541 710379 * c(CHAD, KAT7, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, TAC4, LOC284080, ITGA3, HILS1, MRPL27, PDK2, EPN3, RSAD1, LRRC59, XYLT2, SGCA, FLJ45513, ACSF2, MYCBPAP, PPP1R9B) 0.190779541559206 45 0.0542792536217787 0.722486230207003 1652 0.224776081084248 2 2 0 -6.73380583970124 LTS-020 chr17 48615542 48616125 584 * EPN3 NA 0 NA 1.446 1 NA NA NA NA NA LTS-020 chr17 48616126 48619662 3537 * EPN3 0.114823864764214 4 0.0284018778721877 1.1172488804685 47 0.303397816352759 4 4 0 -6.74468573654483 LTS-020 chr17 48619663 48619719 57 * EPN3 NA 0 NA 0.778 1 NA NA NA NA NA LTS-020 chr17 48619720 60689924 12070205 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, TOB1, APPBP2, TLK2, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COX11, DYNLL2, EFCAB3, ANKFN1, PPM1E, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, C17orf47, GDPD1, HLF, METTL2A, C17orf67, NACA2, SKA2, RNF126P1, YPEL2, C17orf82, TOB1-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TBC1D3P2, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, MRPS23, NA NA NA NA NA NA NA NA NA LTS-020 PTRH2, LUC7L3, SEPT4, MBTD1, BCAS3, RNF43, MKS1, LINC00483, EPN3, SMG8, TMEM100, MSX2P1, PRR11, TEX14, CA10, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, SPATA20, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SCARNA20, SUPT4H1, TBX2, CA4, MIR454, TRIM25, VEZF1, DHX40, COIL, AKAP1, VMP1, EPX, BRIP1, KIF2B, USP32, PPM1D, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1, TBX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 MED13) 0.183130483473614 101 0.0795886777359844 0.692789537096179 6771 0.196124298004292 2 2 0 -7.18941588399292 LTS-020 NA NA NA NA LTS-020 chr17 60689925 60689940 16 * TLK2 NA 0 NA 1.004 1 NA NA NA NA NA LTS-020 chr17 60689941 67513714 6823774 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, GNA13, TLK2, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KPNA2, MAP3K3, PLEKHM1P1, LOC440461, TACO1, AMZ2, PECAM1, FAM20A, WIPI1, NA NA NA NA NA NA NA NA NA LTS-020 PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, SCN4A, SMURF2, SMARCD2, SNORA50C, SNORD104, MIR634, MIR635, LOC729683, CACNG1, LIMD2, KCNH6, AXIN2, RGS9, CEP95, SLC16A6, STRADA, PRR29, CD79B, MRC2, HELZ) 0.162219637802656 97 0.0706658318695424 0.73864593052823 5174 0.226823087806196 2 2 0 -6.84884945116246 LTS-020 NA NA NA NA LTS-020 chr17 67513715 67513720 6 * MAP2K6 NA 0 NA 0.901 1 NA NA NA NA NA LTS-020 chr17 67513721 79827770 12314050 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-020 AFMID, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, TMC8, AANAT, SLC39A11, TRIM65, UNC13D, EVPL, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, FSCN2, GALK1, NAT9, GCGR, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 OTOP3, MCRIP1, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, PDE6G, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SRSF2, CPSF4L, SMIM5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SYNGR2, HGS, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.177069264886418 306 0.0699446847155767 0.772335481427017 12896 0.287915109218215 2 2 0 -7.04383214116067 LTS-020 NA NA NA NA LTS-020 chr17 79827771 79845681 17911 * ARHGDIA NA 0 NA 0.709 1 NA NA NA NA NA LTS-020 chr17 79845682 80363378 517697 * c(ALYREF, CSNK1D, NOTUM, CENPX, LRRC45, FASN, MYADML2, NPB, UTS2R, CCDC57, GPS1, TEX19, MAFG, DCXR, ANAPC11, SIRT7, PYCR1, PCYT2, RAC3, RFNG, SECTM1, DUS1L, ASPSCR1, OGFOD3, SLC16A3, CD7, MAFG-AS1) 0.184020734756668 62 0.045817782243922 0.707842237693231 1518 0.204273994561247 2 2 0 -6.75560972200795 LTS-020 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.798 1 NA NA NA NA NA LTS-020 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.213274856803486 3 0.0690096611593865 1.36190346004137 39 0.557488313754656 6 5 1 -6.7506659501968 LTS-020 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.649 1 NA NA NA NA NA LTS-020 chr17 80391535 81042978 651444 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.197311078948712 32 0.0476740338975476 0.689879669418585 873 0.19876884506641 2 2 0 -6.7714859830576 LTS-020 chr17 81042979 81083625 40647 * METRNL NA 0 NA 0.661336089331711 25 0.130589535058008 2 NA NA -5.77789724660069 LTS-020 chr18 116845 121139 4295 * ROCK1P1 0.409 1 NA 0.969857629626928 25 0.816852836603183 3 3 0 -5.76441107871046 LTS-020 chr18 121140 909561 788422 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, ROCK1P1, TYMS, YES1, COLEC12, USP14, THOC1) 0.407513612523773 21 0.137925152234999 0.924449442968148 632 0.302209180891026 3 2 1 -6.79386598063398 LTS-020 chr18 909562 912123 2562 * ADCYAP1 NA 0 NA 0.967049472312608 54 0.275012978538795 3 NA NA -5.76441343054123 LTS-020 chr18 912124 2587993 1675870 * c(NDC80, ADCYAP1, LINC00470, METTL4) 0.314 1 NA 0.587277310104606 139 0.129663528377024 1 1 0 -6.9393653190238 LTS-020 chr18 2587994 14866503 12278510 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, NA NA NA NA NA NA NA NA NA LTS-020 PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.218499480638512 149 0.0817127150654893 0.64110323376172 5789 0.561970023699614 2 2 0 -7.15884317462646 LTS-020 NA NA NA NA LTS-020 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.779175771583254 33 0.364862967219866 2 NA NA -5.76721405243614 LTS-020 chr18 18529727 19029515 499789 * c(ROCK1, GREB1L) 0.229 1 NA 0.618700916937803 247 0.206212330529723 2 2 0 -5.94802810135926 LTS-020 chr18 19029516 77926862 58897347 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, PARD6G-AS1, LOC100131655, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, ESCO1, OSBPL1A, NA NA NA NA NA NA NA NA NA LTS-020 HAUS1, ALPK2, LOXHD1, INO80C, TTC39C, FAM69C, PSMA8, STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, DSG4, AQP4-AS1, ANKRD29, CYB5A, C18orf54, TCEB3C, DCC, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, ZNF521, TPGS2, SETBP1, KCNG2, CABYR, GATA6, SNORD58B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SNORD58A, SALL3, CDH20, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, C18orf8, RAX, CXXC1, LOC339298, CPLX4, AQP4, CCDC178, ATP9B, OACYLP, LAMA3, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR1-2, MIR122, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, NPC1, RNF165, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, RBBP8, HRH4, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SNRPD1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, ZNF236, CCDC102B, RBFA, GREB1L, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, PARD6G, CNDP1, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, CABLES1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.197474170223658 396 0.0909333147658496 0.648023832965463 20366 0.257738154015953 2 2 0 -10.4512202398819 LTS-020 NA NA NA NA LTS-020 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.555901611862914 17 0.127086468942352 1 NA NA -5.79352911835477 LTS-020 chr19 107416 374453 267038 * c(LINC01002, THEG, MIER2, OR4F17, PLPP2) 0.426 1 NA 0.972164829882365 141 0.248016557647417 3 3 0 -5.76525511626827 LTS-020 chr19 374454 7550864 7176411 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, TUBB4A, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, NA NA NA NA NA NA NA NA NA LTS-020 TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ADGRE1, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 GZMM, ADGRE4P, ADAMTSL5, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, ONECUT3, MEX3D, PRSS57, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, FLJ25758, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PSPN, PRTN3, AZU1, NCLN, GPR108, SPPL2B, DUS3L, SHD, PTBP1, WDR18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, TLE6, PLPPR3, DENND1C, ZNF556, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.439647298498782 379 0.0867493292980252 0.953117591497435 12143 0.30219568968403 3 2 1 -7.1433753567488 LTS-020 NA NA NA NA LTS-020 chr19 7550865 7553704 2840 * PEX11G NA 0 NA 1.21 1 NA NA NA NA NA LTS-020 chr19 7553705 9000240 1446536 * c(PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, TRAPPC5, PCP2, ZNF358, ZNF558, ELAVL1, MCEMP1, FCER2, KANK3, ACTL9, OR2Z1, CD209, CLEC4G, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, SNAPC2, STXBP2, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, MBD3L1, RAB11B, PEX11G, MUC16) 0.443572186112389 112 0.0593011036801458 0.984213308222364 2796 0.234560951877431 4 2 2 -7.62728336265038 LTS-020 chr19 9000241 9004882 4642 * MUC16 0 1 NA 1.09264850653876 35 0.69036538005841 4 4 0 -5.76444527360417 LTS-020 chr19 9004883 9058926 54044 * MUC16 0.191942670752665 13 0.166333924257724 1.00876043984271 341 0.65747647866148 2 2 0 -6.74094515326199 LTS-020 chr19 9058927 9213026 154100 * c(OR1M1, OR7G2, MUC16) 0.39 1 NA 1.00850732364398 623 0.214552991226147 3 3 0 -5.77041688734134 LTS-020 chr19 9213027 10169278 956252 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, C3P1, OR7G2, OR7G3, COL5A3, RDH8, PIN1, ZNF562, FBXL12, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.416337718239045 26 0.154960724552533 0.996775301313607 1283 0.488146358460211 3 2 1 -6.80163096415378 LTS-020 chr19 10169279 10200761 31483 * c(C3P1, C19orf66) 0.454 1 NA 0.916831403859473 37 0.169497043477896 3 3 0 -5.76549314792116 LTS-020 chr19 10200762 10403368 202607 * c(SNORD105B, MIR4322, DNMT1, ICAM1, ICAM4, P2RY11, MRPL4, C19orf66, PPAN, SNORD105, PPAN-P2RY11, ICAM5, ANGPTL6, EIF3G, S1PR2) 0.284678216477973 9 0.238607476366056 0.958634159326256 615 0.372414558189391 4 3 1 -6.77609549673358 LTS-020 chr19 10403369 10403947 579 * ICAM5 0.454 1 NA 1.01934742373862 13 0.111240614700632 3 3 0 -5.76453001997026 LTS-020 chr19 10403948 12256358 1852411 * c(ZGLP1, MIR1181, MIR1238, ZNF625-ZNF20, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, ZNF433, DNM2, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF763, ZNF844, ICAM3, ILF3, TMEM205, ZNF788, LDLR, ZNF833P, MIR199A1, ECSIT, PDE4A, S1PR5, ACP5, ZNF823, PRKCSH, ANGPTL8, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, NA NA NA NA NA NA NA NA NA LTS-020 SMARCA4, MIR638, ICAM5, TYK2, ZNF878, ZNF20, ZNF69, YIPF2, QTRT1, ELOF1, ATG4D, C19orf52, ZNF625, ZNF700, ZNF439, RAB3D, KEAP1) 0.4400918037086 98 0.0973975009734659 0.977707393622326 3838 0.274392697186194 3 2 1 -7.07494191427826 LTS-020 NA NA NA NA LTS-020 chr19 12256359 12300050 43692 * c(ZNF625-ZNF20, ZNF136, ZNF625) 0 1 NA 0.983244233349677 103 0.338279292712641 3 3 0 -5.7646073934025 LTS-020 chr19 12300051 12542654 242604 * c(ZNF443, ZNF563, ZNF44, ZNF136, ZNF442, ZNF799) 0.327409562088103 14 0.158628947097126 0.978974870775435 342 0.366566730091378 3 2 1 -6.76791804229598 LTS-020 chr19 12542655 12542772 118 * ZNF443 0.476 1 NA 0.946651753880045 5 0.971513252611615 3 3 0 -5.76441014012888 LTS-020 chr19 12542773 15303225 2760453 * c(LOC100507373, DDX39A, ZNF443, RNASEH2A, KLF1, GIPC1, ILVBL, NACC1, MISP3, RLN3, OR1I1, CCDC105, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, CASP14, SYCE2, OR7A17, GCDH, OR7C2, OR7A5, OR7C1, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, OR7A10, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, NOTCH3, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, NA NA NA NA NA NA NA NA NA LTS-020 ASF1B, PKN1, PTGER1, MIR181D, ZNF490, RAD23A, RFX1, C19orf67, SLC1A6, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, SYDE1, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.453949926700018 75 0.0373048218026803 0.972033108923858 4656 0.251957769661039 4 2 2 -8.88080050238889 LTS-020 NA NA NA NA LTS-020 chr19 15303226 15376259 73034 * c(BRD4, NOTCH3, EPHX3) 0.429 1 NA 0.99526871621609 147 0.186109340716897 3 3 0 -5.76658819583921 LTS-020 chr19 15376260 15807212 430953 * c(MIR1470, AKAP8, CYP4F8, PGLYRP2, CYP4F22, BRD4, AKAP8L, CYP4F3, WIZ, RASAL3, CYP4F12) 0.265183744884513 9 0.201872553304747 0.97659762114589 661 0.288220346081417 4 3 1 -6.86876982581705 LTS-020 chr19 15807213 15807830 618 * CYP4F12 0.492 1 NA 0.837160373971243 5 0.162099660702914 3 3 0 -5.76465374053472 LTS-020 chr19 15807831 16197432 389602 * c(LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F11, UCA1, CYP4F12, TPM4, CYP4F2) 0.437526662546837 19 0.0599242699467834 0.963059358549939 315 0.294022876260046 4 2 2 -7.16179012272781 LTS-020 chr19 16197433 16232508 35076 * c(RAB8A, TPM4) 0.336 1 NA 0.89967469576219 31 0.162846163965503 3 3 0 -5.76721639112039 LTS-020 chr19 16232509 16965149 732641 * c(KLF2, CHERP, CIB3, CALR3, SIN3B, FAM32A, NWD1, RAB8A, EPS15L1, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, MED26) 0.279408373301084 9 0.243766680340945 0.944315074837101 1023 0.284367789960907 3 2 1 -6.80743835731027 LTS-020 chr19 16965150 16976289 11140 * SIN3B 0.429 1 NA 1.02529779314628 23 0.173153077195563 3 3 0 -5.76554077923186 LTS-020 chr19 16976290 22786020 5809731 * c(ZNF737, TMEM221, MEF2B, ZNF729, MIR1270, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, ZNF257, CCDC124, NXNL1, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, SSBP4, ZNF431, ZNF626, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, CPAMD8, SLC25A42, LINC00663, ZNF493, BABAM1, ZNF429, IL12RB1, INSL3, NA NA NA NA NA NA NA NA NA LTS-020 JAK3, JUND, YJEFN3, SLC27A1, KCNN1, LINC00664, HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, MYO9B, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ZNF253, ATP13A1, ANO8, SUGP1, RAB3A, UPF1, RPL18A, LOC641367, MRPL34, SLC5A5, ZNF826P, BST2, LOC729966, BORCS8, UBA52, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF208, DDA1, KXD1, ABHD8, OCEL1, COLGALT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ZNF430, PBX4, KIAA1683, ELL, ZNF93, PLVAP, USHBP1, TSSK6, GTPBP3, MPV17L2, RFXANK, F2RL3, ZNF486, ZNF682, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, HOMER3, GDF15) 0.438559296943219 160 0.104865441633822 0.977454852993059 6913 0.284597192170795 3 2 1 -7.03528267088953 LTS-020 NA NA NA NA LTS-020 chr19 22786021 22941546 155526 * c(GOLGA2P9, ZNF492, ZNF99) 0.342 1 NA 0.976001236913375 51 0.260072376050041 3 3 0 -5.76507482933352 LTS-020 chr19 22941547 24115369 1173823 * c(ZNF730, ZNF681, ZNF675, ZNF728, RPSAP58, ZNF724, ZNF726, ZNF91, ZNF99) 0.256735220403979 13 0.234709941012852 1.04032584277665 363 0.342728881377116 4 3 1 -6.85502742203362 LTS-020 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 1.02565082972703 91 0.223822853706385 3 NA NA -5.77847192728434 LTS-020 chr19 28247625 30102967 1855343 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.48 1 NA 0.98280189271957 71 0.17885281990263 3 3 0 -5.79332524024247 LTS-020 chr19 30102968 32954725 2851758 * c(THEG5, POP4, DPY19L3, ZNF507, LOC400684, TSHZ3, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.443358257905196 11 0.0514101157361078 0.974990335410413 611 0.198094624946029 3 2 1 -7.8872187838525 LTS-020 chr19 32954726 33182862 228137 * c(DPY19L3, RGS9BP, ANKRD27, PDCD5) 0.417 1 NA 0.967170962922263 222 0.528378946434296 3 3 0 -5.76449124785448 LTS-020 chr19 33182863 33467357 284495 * c(SLC7A9, NUDT19, CEP89, FAAP24, TDRD12) 0.265026878200314 9 0.239901947562842 0.981977763985427 342 0.454592918192122 4 3 1 -6.77926296591366 LTS-020 chr19 33467358 33487071 19714 * c(RHPN2, FAAP24) 0.479 1 NA 0.953231182526238 28 0.160069065781324 3 3 0 -5.76441139970823 LTS-020 chr19 33487072 37690420 4203349 * c(HPN-AS1, LINC01531, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, UBA2, LINC00904, MIR5196, UPK1A-AS1, TMEM147, CEBPA, CEBPG, HCST, UPK1A, TBCB, ARHGAP33, WDR88, WTIP, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, ZNF599, FAM187B, PROSER3, ZNF567, LGI4, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, GPI, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, FFAR1, FFAR3, FFAR2, NA NA NA NA NA NA NA NA NA LTS-020 HPN, APLP1, ZNF181, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, LOC400685, LRP3, MAG, NPHS1, ATP4A, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, GPATCH1, PSENEN, ZNF302, LIN37, SLC7A10, GRAMD1A, ZFP14, ZNF529, HAMP, PRODH2, SCN1B, SCGB1B2P, CHST8, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, USF2, ZNF146, KCTD15, RBM42, LRFN3, IGFLR1, CEBPA-AS1, CAPNS1, KIRREL2, PDCD2L, NFKBID, ZNF382, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ZNF566, ALKBH6, RHPN2, ZNF30, ZNF461, ZNF585B, DMKN, CD22, KIAA0355, KMT2B) 0.448172859462114 161 0.0749002265957813 0.989224859418967 5855 0.251795592100443 3 2 1 -7.43814983342614 LTS-020 NA NA NA NA LTS-020 chr19 37690421 38024216 333796 * c(ZNF569, ZNF570, ZNF383, LOC284412, HKR1, ZNF793, ZNF527, ZNF585B) 0 1 NA 1.0400777501793 353 0.308770269957841 3 3 0 -5.77974100281216 LTS-020 chr19 38024217 39062893 1038677 * c(ZNF571-AS1, LOC100631378, SPINT2, RASGRP4, ZNF573, FAM98C, ZNF781, ZNF540, GGN, ZFP30, SIPA1L3, ZNF793, SPRED3, ZNF571, PSMD8, CATSPERG, RYR1, C19orf33, LOC644554, DPF1, WDR87, ZNF607, YIF1B, KCNK6, PPP1R14A) 0.347792709964514 26 0.19635478486266 1.00246772501049 1838 0.455890160177034 3 2 1 -6.74495368308618 LTS-020 chr19 39062894 39232475 169582 * c(MAP4K1, CAPN12, EIF3K, RYR1, ACTN4) 0.431 1 NA 0.962868898740073 447 0.218597972645968 3 3 0 -5.7645605306822 LTS-020 chr19 39232476 40384193 1151718 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, RINL, FBXO27, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.450914642675361 46 0.0435628093387918 0.978388827672038 1907 0.255011403503957 4 2 2 -8.00358556927531 LTS-020 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.36 1 NA NA NA NA NA LTS-020 chr19 40389650 40405934 16285 * FCGBP 0.216979522667408 3 0.228648930313119 0.459310846885778 39 0.633337574387391 2 2 0 -6.74562402063671 LTS-020 chr19 40405935 40405997 63 * FCGBP NA 0 NA 1.067 1 NA NA NA NA NA LTS-020 chr19 40405998 41531915 1125918 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2B6, CYP2B7P, ZNF780B, AKT2, CYP2G1P, PLD3, ZNF780A, C19orf54, SERTAD3, SERTAD1, ZNF546, MAP3K10, RAB4B, PSMC4, PRX, SPTBN4, BLVRB, SNRPA, MIR641, COQ8B, CNTD2, ITPKC, MIA, LTBP4, FCGBP, NUMBL, SHKBP1) 0.456864566596656 41 0.0792519908190355 0.962126665030873 2344 0.215567116981673 3 2 1 -7.44243311415679 LTS-020 chr19 41531916 41532005 90 * CYP2A7 0.449 1 NA 0.868663263715905 5 0.428266038812325 3 3 0 -5.76441273783175 LTS-020 chr19 41532006 41782002 249997 * c(HNRNPUL1, CYP2A7, CYP2A13, CYP2F1, CYP2S1, AXL) 0.346688876149058 9 0.248716203734296 0.988078461555455 303 0.219177145867758 3 2 1 -6.74008273250998 LTS-020 chr19 41782003 41798111 16109 * HNRNPUL1 0.494 1 NA 1.03434415016399 16 0.163772555698444 3 3 0 -5.76671598791066 LTS-020 chr19 41798112 42083849 285738 * c(ERICH4, PCAT19, HNRNPUL1, B3GNT8, ATP5SL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CEACAM21, CCDC97) 0.456912208140454 25 0.031346025798071 0.952831335610506 393 0.273237059323654 4 2 2 -8.66572817348549 LTS-020 chr19 42083850 42085829 1980 * CEACAM21 0 1 NA 1.13446946586844 11 1.81460967503408 4 4 0 -5.76441071137297 LTS-020 chr19 42085830 43859641 1773812 * c(LOC100289650, MIR4323, LOC100505622, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM8, CEACAM4, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRG1, PRR19, TMEM145, CXCL17, LOC284344, GRIK5, GSK3A, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, POU2F2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, RPS19, CEACAM1, DMRTC2, ZNF574, PSG10P, CNFN, CEACAM21, ARHGEF1, CD79A) 0.367032435059148 17 0.15612024023734 0.972736529078802 2195 0.237039646858778 3 2 1 -6.73964176286583 LTS-020 chr19 43859642 43865499 5858 * CD177 0.474 1 NA 1.16694244364148 15 0.322956845119474 4 4 0 -5.7644148018863 LTS-020 chr19 43865500 44764064 898565 * c(SRRM5, LOC100379224, LOC100505715, ZNF234, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, KCNN4, PINLYP, PLAUR, SMG9, IRGC, CD177, PHLDB3, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF230, ZNF576, TEX101, ZNF235) 0.445027708001972 42 0.0840601003126696 0.982513309936149 1492 0.24611416583984 3 2 1 -7.23552432964615 LTS-020 chr19 44764065 44769998 5934 * c(ZNF233, ZNF235) 0 1 NA 1.20319059403297 11 0.907375255638732 4 4 0 -5.76441166609783 LTS-020 chr19 44769999 44892228 122230 * c(ZNF285, ZNF233, ZNF112, ZNF235) 0.306262972252629 15 0.184708186839984 1.00602534536722 221 0.361707143176532 4 3 1 -6.74738124490108 LTS-020 chr19 44892229 45004305 112077 * c(ZNF285, ZNF180, ZNF112, ZNF229) 0.469 1 NA 1.00145395440789 139 0.215827189113006 3 3 0 -5.76769233408139 LTS-020 chr19 45004306 51519451 6515146 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, NA NA NA NA NA NA NA NA NA LTS-020 CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, GPR32, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, C19orf81, APOC2, APOE, KLK3, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, SIGLEC16, LOC400710, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 BCAM, MIR150, MIR330, IGFL4, MYBPC2, NOVA2, NPAS1, NTF4, NUCB1, SHANK1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, CABP5, PRRG2, KLK7, KLK6, KLK10, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, KLKP1, RPL18, RPS11, RRAS, RTN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CLEC11A, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, C5AR1, TULP2, CCDC61, NR1H2, VASP, MIR769, CA11, ZNF180, TRAPPC6A, FKRP, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 CYTH2, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, NAPSA, CD37, KLK4, DHX34) 0.449011080102271 319 0.051978154776439 0.959844668296405 12586 0.401831012484433 3 2 1 -7.98499214067389 LTS-020 NA NA NA NA LTS-020 chr19 51519452 51520487 1036 * KLK10 0.389 1 NA 0.911840852837923 7 0.327441016135149 3 3 0 -5.76442241568937 LTS-020 chr19 51520488 51841417 320930 * c(KLK11, VSIG10L, KLK13, SIGLEC7, SIGLEC9, SIGLEC17P, SIGLECL1, IGLON5, KLK14, KLK12, KLK10, CTU1, CD33) 0.31213870856228 9 0.191859395854823 0.952788734407786 468 0.440193800794711 4 3 1 -6.7788483532948 LTS-020 chr19 51841418 51843589 2172 * VSIG10L 0.489 1 NA 0.804575619379011 15 0.224679517789864 2 2 0 -5.76466215551435 LTS-020 chr19 51843590 52133675 290086 * c(LOC100129083, CLDND2, VSIG10L, C19orf84, ETFB, SIGLEC8, LIM2, NKG7, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, SIGLEC6) 0.45608005574749 30 0.047468670853982 0.95584043580577 668 0.259265257164059 4 2 2 -7.76178030588764 LTS-020 chr19 52133676 52133720 45 * SIGLEC5 NA 0 NA 1.121 1 NA NA NA NA NA LTS-020 chr19 52133721 52196631 62911 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.452 1 NA 1.68174069194018 39 0.706680918362642 6 6 0 -5.7644764598943 LTS-020 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.909 1 NA NA NA NA NA LTS-020 chr19 52196825 53770080 1573256 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.450694471031785 76 0.043467253251881 0.983257820939064 2053 0.249611726321612 4 2 2 -8.11615145106708 LTS-020 chr19 53770081 53770181 101 * VN1R4 NA 0 NA 1.294 1 NA NA NA NA NA LTS-020 chr19 53770182 53818565 48384 * c(BIRC8, VN1R4, FAM90A27P) 0.441091930279819 10 0.04077104092095 1.29987507077856 108 0.603148862738755 4 2 2 -7.47895952134458 LTS-020 chr19 53818566 53818589 24 * character(0) NA 0 NA 0.732 1 NA NA NA NA NA LTS-020 chr19 53818590 53997928 179339 * c(ZNF813, TPM3P9, ZNF525, ZNF761, ZNF765, ZNF845) 0.464488975923556 11 0.0195397031707239 0.952005615650055 355 0.220791978090064 4 2 2 -10.7595240344517 LTS-020 chr19 53997929 54007145 9217 * ZNF813 0.47 1 NA 1.11553568447532 27 0.460277149260154 4 4 0 -5.7644944060551 LTS-020 chr19 54007146 54297234 290089 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, LOC284379, MIR372, MIR373, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, NA NA NA NA NA NA NA NA NA LTS-020 MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, NLRP12) 0.248368150859335 9 0.241656149196424 0.926294569279566 313 0.334514956899951 3 3 0 -6.83904836739794 LTS-020 NA NA NA NA LTS-020 chr19 54297235 54297423 189 * NLRP12 0.488 1 NA 1.05931772489779 5 0.890861212535376 3 3 0 -5.76441166802414 LTS-020 chr19 54297424 54722684 425261 * c(MIR935, LILRB3, OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, PRKCG, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.454592506730084 32 0.087719655170468 0.965015322851 1211 0.213347169894438 4 2 2 -7.23788587035824 LTS-020 chr19 54722685 54725809 3125 * c(LILRB3, LILRA6) NA 0 NA 0.686350656984429 39 0.525393279853787 2 NA NA -5.76443465905033 LTS-020 chr19 54725810 54726225 416 * c(LILRB3, LILRA6) NA 0 NA 3.392 1 NA NA NA NA NA LTS-020 chr19 54726226 54744209 17984 * c(LILRB3, LILRA6) 0.423261032223963 4 0.0597348307103987 1.55642060005586 46 0.621968896499303 6 3 3 -6.88634831401648 LTS-020 chr19 54744210 54744256 47 * c(LILRB3, LILRA6) NA 0 NA 0.847 1 NA NA NA NA NA LTS-020 chr19 54744257 55281352 537096 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.430285621575622 34 0.0598029741896265 0.920366753579176 1123 0.256766527771612 2 1 1 -7.21622318428996 LTS-020 chr19 55281353 55281368 16 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.273 1 NA 0.334 1 NA NA NA NA NA LTS-020 chr19 55281369 55341707 60339 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.337146696166179 26 0.0882188188540291 1.18802999880011 148 0.85386086472562 6 4 2 -6.75398861997077 LTS-020 chr19 55341708 55341710 3 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.183 1 NA NA NA NA NA LTS-020 chr19 55341711 55351171 9461 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.354401434785458 39 0.453907026156307 0 NA NA -5.7660840050627 LTS-020 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.403 1 NA NA NA NA NA LTS-020 chr19 55358616 55377853 19238 * c(KIR2DS4, KIR3DL1, KIR3DL2) 0.358776599263385 10 0.0910247829500906 1.35303434792288 38 0.767901057519393 6 4 2 -6.73750305946168 LTS-020 chr19 55377854 55377871 18 * c(KIR3DL1, KIR3DL2) 0.457 1 NA 1.486 1 NA NA NA NA NA LTS-020 chr19 55377872 55401600 23729 * c(FCAR, KIR3DL1, KIR3DL2) 0.221099262705015 9 0.21778946255501 0.972178191591944 56 0.542264771852467 6 5 1 -6.74617056721378 LTS-020 chr19 55401601 55420801 19201 * c(FCAR, NCR1) 0.477 1 NA 0.950235236971209 19 0.159781996951182 3 3 0 -5.76442054530968 LTS-020 chr19 55420802 59028162 3607361 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, PPP6R1, ZIM2, NA NA NA NA NA NA NA NA NA LTS-020 HSPBP1, TMEM86B, ZNF549, ZNF324, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, ZNF835, ZNF264, NCR1) 0.428107597168515 198 0.0962556788954962 0.978058061719963 7063 0.619033696991056 3 2 1 -6.98073796669835 LTS-020 NA NA NA NA LTS-020 chr19 59028163 59084001 55839 * c(MZF1-AS1, TRIM28, CHMP2A, MZF1, ZBTB45, UBE2M) NA 0 NA 0.92854399722586 197 0.148201980233029 3 NA NA -5.76559684224311 LTS-020 chr20 68260 76962 8703 * DEFB125 0.498 1 NA 1.09783436247305 11 0.299003618099119 4 4 0 -5.76471977838041 LTS-020 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.435279431294212 69 0.112457954632397 0.981244303217448 1950 0.309540512961491 3 2 1 -6.96312628259609 LTS-020 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.081 1 NA NA NA NA NA LTS-020 chr20 1569093 1592347 23255 * SIRPB1 NA 0 NA 0.141956362589828 39 0.180745524617805 0 NA NA -5.94938206271285 LTS-020 chr20 1592348 1600390 8043 * SIRPB1 NA 0 NA 1.125 1 NA NA NA NA NA LTS-020 chr20 1600391 20348962 18748572 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, MACROD2, BANF2, SCP2D1, ISM1, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, UBOX5, BTBD3, PLCB1, PRND, FLRT3, NA NA NA NA NA NA NA NA NA LTS-020 LAMP5, SPEF1, C20orf194, CFAP61, SNX5, GNRH2, TMEM230, LINC00652, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, MIR103A2, LINC00851, OXT, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, PRNP, TMX4, GPCPD1, CPXM1, OTOR, PAK5, KAT14, SLC24A3, MAVS, EBF4, PTPRA, OVOL2, FASTKD5, RRBP1, BFSP1, ANKEF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SNORA51, SNORD17, SNORD110, TGM3, LINC01433, ZNF133, NDUFAF5, ZNF343, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ATRN, CDS2, MGME1, DTD1, LZTS3, RASSF2, CDC25B, SLC23A2) 0.435946640101632 237 0.0988690027456846 1.0106013132375 9765 0.333745188303509 3 2 1 -7.33315885949557 LTS-020 NA NA NA NA LTS-020 chr20 20348963 20370194 21232 * INSM1 0 1 NA 1.05082096930304 53 0.298102982614786 3 3 0 -5.76572582263826 LTS-020 chr20 20370195 23531060 3160866 * c(LINC01432, CST8, CSTL1, LINC00261, CST11, CST13P, LINC00656, XRN2, CD93, LOC284788, NXT1, FOXA2, NKX2-2, PAX1, KIZ, RALGAPA2, NAPB, GZF1, NKX2-4, SSTR4, THBD) 0.341732753671327 18 0.187166321826721 1.00723701977975 1373 0.266829802787372 3 2 1 -6.81776535301205 LTS-020 chr20 23531061 23549216 18156 * CST9L 0.453 1 NA 1.12033855042994 25 0.432359907947071 4 4 0 -5.76457089864478 LTS-020 chr20 23549217 25595123 2045907 * c(CST9L, CST9, NANP, CST1, CST2, CST3, CST4, CST5, NINL, ABHD12, LOC284798, VSX1, FLJ33581, APMAP, PYGB, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.434612938731026 45 0.0995077429604898 1.01822924725531 1177 0.31474356428738 3 2 1 -7.06094664706456 LTS-020 chr20 25595124 25595466 343 * NANP 0.301 1 NA 0.853310887466434 7 0.264085754470562 3 3 0 -5.76444729945865 LTS-020 chr20 25595467 26188981 593515 * c(LOC100134868, NANP, NCOR1P1, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.326342989749449 30 0.10593437569563 1.02470391869571 226 0.601010549450373 4 3 1 -6.77275068641134 LTS-020 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.07834410960797 3 0.206114046100696 4 NA NA -5.76441455260404 LTS-020 chr20 29625845 29625876 32 * FRG1BP 0.347 1 NA 1.509 1 NA NA NA NA NA LTS-020 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.355164287076266 16 0.103491042285472 1.04699375536291 39 0.621467439756471 3 2 1 -6.7392363820805 LTS-020 chr20 29652192 29891003 238812 * c(DEFB115, FRG1BP) 0.49 1 NA 1.0482313068696 17 0.549866227047142 3 3 0 -5.76853671574927 LTS-020 chr20 29891004 31396536 1505533 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, TSPY26P, NOL4L, CCM2L, LINC00028, LOC149950, COMMD7, TTLL9, ASXL1, DNMT3B, TPX2, FOXS1, POFUT1, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf203, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.460448046867557 40 0.0793327582935419 0.97556651879989 2217 0.218627849209851 3 2 1 -7.49894858734218 LTS-020 chr20 31396537 31396672 136 * DNMT3B 0 1 NA 1.36528964636489 5 1.03834902609864 5 5 0 -5.76441020174367 LTS-020 chr20 31396673 31946729 550057 * c(BPIFB6, BPIFA3, BPIFA2, SUN5, BPIFB4, DNMT3B, MAPRE1, BPIFA4P, BPIFB3, BPIFA1, CDK5RAP1, BPIFB2, BPIFB1) 0.308280154069096 31 0.218348764126795 1.02240367796556 827 0.507102786038064 4 3 1 -6.75954651960011 LTS-020 chr20 31946730 31981849 35120 * CDK5RAP1 0.479 1 NA 0.988437122863823 63 0.167769124879022 3 3 0 -5.7653068641046 LTS-020 chr20 31981850 34148012 2166163 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, CEP250, PXMP4, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, C20orf173, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, EIF6, ASIP, ERGIC3, CDK5RAP1, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, GDF5, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.432163386640886 31 0.120723651369564 0.990767015946875 3017 0.245055151849596 3 2 1 -6.9405884535145 LTS-020 chr20 34148013 34297097 149085 * c(RBM12, ROMO1, SPAG4, CPNE1, NFS1, RBM39) 0 1 NA 0.945278701621044 499 0.17745453982731 3 3 0 -5.76469606217182 LTS-020 chr20 34297098 35384220 1087123 * c(TGIF2-C20orf24, MYL9, CNBD2, EPB41L1, DLGAP4, AAR2, PHF20, SCAND1, C20orf24, NDRG3, TGIF2, NORAD, DSN1, SLA2, RBM39) 0.287658420627693 9 0.249719731788348 0.990665156965959 1173 0.262019666213384 3 2 1 -6.80350173290418 LTS-020 chr20 35384221 35407640 23420 * c(SOGA1, DSN1) 0.464 1 NA 0.89617193376142 75 0.159651892713011 3 3 0 -5.76662386097044 LTS-020 chr20 35407641 44757953 9350313 * c(ADA, ACOT8, LOC100287792, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, LINC00489, SGK2, WFDC2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, SLC32A1, WFDC3, MROH8, SOGA1, TLDC2, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, ZHX3, WFDC11, WFDC9, SAMHD1, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, GHRH, TP53TG5, WFDC10B, NA NA NA NA NA NA NA NA NA LTS-020 HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, DBNDD2, CTNNBL1, EPPIN, RALGAPB, JPH2, SLC12A5, NCOA5, RPRD1B, RBL1, KCNK15, DHX35, RPN2, SDC4, MANBAL, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, LPIN3, SLPI, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 FAM83D, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40, TTI1, MAFB) 0.437440258641485 143 0.0989600221525748 0.975614645477082 8548 0.264497318530347 3 2 1 -7.0723069010249 LTS-020 NA NA NA NA LTS-020 chr20 44757954 51873072 7115119 * c(SNORD12B, ZNF663P, LOC100131496, MIR3194, MIR3616, ATP9A, TRERNA1, CEBPB, ARFGEF2, TP53RK, OCSTAMP, TSHZ2, FAM65C, CSE1L, EYA2, SLC9A8, ADNP, ZMYND8, SNORD12C, MOCS3, LINC00494, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, ZFAS1, NFATC2, SLC35C2, BCAS4, DDX27, ZNF334, ZFP64, RNF114, SULF2, SALL4, ZNFX1, PTGIS, PREX1, PTPN1, ELMO2, CDH22, SLC13A3, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, MKRN7P, NA NA NA NA NA NA NA NA NA LTS-020 SLC2A10, NCOA3, PARD6B, DPM1, B4GALT5, CD40, SPATA2) 0.43754743356418 57 0.0896428481562467 0.947324640959346 4834 0.232920939870546 3 2 1 -7.10339518698328 LTS-020 NA NA NA NA LTS-020 chr20 51873073 52592070 718998 * c(TSHZ2, SUMO1P1, ZNF217, BCAS1) 0.423147322263673 5 0.021529050141611 1.29787630041137 246 0.285750097291103 4 2 2 -7.79040358547034 LTS-020 chr20 52592071 52684924 92854 * BCAS1 0.29 1 NA 1.20557639408543 51 0.426475898222521 4 4 0 -5.76454266765929 LTS-020 chr20 52684925 62872739 10187815 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ARFRP1, OGFR-AS1, RGS19, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, NA NA NA NA NA NA NA NA NA LTS-020 GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, GNAS, SLCO4A1, NPBWR2, LINC00176, C20orf197, MIR646HG, KCNQ2, FAM209B, LAMA5, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MYT1, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 LIME1, UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, ARFGAP1, DOK5, SLC2A4RG, PSMA7, PMEPA1, CASS4, RAB22A, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, AURKA, TAF4, TCEA2, MIR647, TFAP2C, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, VAPB, OSBPL2) 0.338677938627048 235 0.0892265940636414 1.30322381318616 9427 0.371229667946992 5 3 2 -7.13500073562997 LTS-020 NA NA NA NA LTS-020 chr20 62872740 62959313 86574 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.29757923975987 111 0.404096563252439 5 NA NA -5.76648361110985 LTS-020 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.344 1 NA 0.463885112836882 27 0.415012864936351 1 1 0 -5.76626104040161 LTS-020 chr21 9907203 9907375 173 * TEKT4P2 0.295490604072041 6 0.0595751626099333 1.50514192423114 12 0.701089730780633 11 8 3 -6.73318214870646 LTS-020 chr21 9907376 9907384 9 * TEKT4P2 0.38 1 NA 1.473 1 NA NA NA NA NA LTS-020 chr21 9907385 11059877 1152493 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.36353632490559 28 0.0928175943456079 1.04452677208543 146 1.03477745315724 3 2 1 -6.73847462924087 LTS-020 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.14495826352047 5 0.00303315017762062 4 NA NA -7.53012096984857 LTS-020 chr21 14745307 14756794 11488 * character(0) 0.458 1 NA 0.931405550734591 11 0.769261381278998 3 3 0 -5.7644173084048 LTS-020 chr21 14756795 15966430 1209636 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.358484189478974 12 0.176995291839454 0.906160200454572 386 0.488220266255935 3 2 1 -6.74226081898546 LTS-020 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 1.322 1 NA NA NA NA NA LTS-020 chr21 15974248 15984982 10735 * LOC388813 0.41 1 NA 1.0365785650025 11 0.513429998769417 3 3 0 -5.7645750807957 LTS-020 chr21 15984983 18914251 2929269 * c(LINC01549, CXADR, USP25, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, NRIP1) 0 1 NA 1.00211597509039 441 0.296222021886047 3 3 0 -5.81088418562087 LTS-020 chr21 18914252 19666901 752650 * c(BTG3, CHODL, CXADR, C21orf91-OT1, CHODL-AS1, C21orf91, TMPRSS15) 0.0962873810605707 9 0.195540277180943 1.01386819760383 373 0.484702925065635 3 3 0 -6.77938845801782 LTS-020 chr21 19666902 19666910 9 * TMPRSS15 0.486 1 NA 1.654 1 NA NA NA NA NA LTS-020 chr21 19666911 24837178 5170268 * c(RNU6-67P, D21S2088E, LINC00317, LINC00320, NCAM2, LINC00308, TMPRSS15) 0.265347877644546 5 0.247520706204552 0.995779561904846 310 0.469798538171753 3 2 1 -6.85419709404718 LTS-020 chr21 26734871 27423561 688691 * c(MIR155HG, GABPA, LINC00515, APP, MIR155, ATP5J, LINC00158, MRPL39, JAM2) 0.185231856419864 9 0.0810848321204404 0.634500280325931 451 0.222358913815791 2 2 0 -6.89318524894054 LTS-020 chr21 27423562 27607664 184103 * APP NA 0 NA 0.59871711323089 37 0.144354397896954 1 NA NA -5.92139809725799 LTS-020 chr21 27607665 27838546 230882 * CYYR1 NA 0 NA 0.799 1 NA NA NA NA NA LTS-020 chr21 27838547 27839202 656 * CYYR1 0.454 1 NA 0.87067667034671 15 0.269302220032226 3 3 0 -5.76445624183657 LTS-020 chr21 27839203 30244848 2405646 * c(MIR4759, ADAMTS5, CYYR1, LINC00161, LINC00314, N6AMT1, LINC00113, ADAMTS1) 0.452648549071147 21 0.0358557294352427 0.970534785830058 435 0.284826580803961 4 2 2 -8.68208262350666 LTS-020 chr21 30244849 31312154 1067306 * c(GRIK1-AS2, RWDD2B, USP16, CCT8, LINC00189, LTN1, GRIK1, N6AMT1, MAP3K7CL, BACH1, GRIK1-AS1) 0.367 1 NA 0.615265967983912 881 0.140488716873178 2 2 0 -6.57557145849623 LTS-020 chr21 31312155 31587793 275639 * c(CLDN17, LINC00307, GRIK1, CLDN8) 0.225 1 NA 0.616311046905481 55 0.176586989846832 2 2 0 -5.91003372945881 LTS-020 chr21 31587794 34542356 2954563 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, PAXBP1-AS1, LINC00159, OLIG2, OLIG1, KRTAP13-1, TCP10L, KRTAP15-1, KRTAP13-4, HUNK, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, C21orf62-AS1, MIS18A, C21orf62, MRAP, C21orf59, NA NA NA NA NA NA NA NA NA LTS-020 SCAF4, EVA1C, KRTAP24-1, KRTAP27-1, SOD1, SNORA80A, TIAM1, KRTAP19-8, LINC01548, URB1-AS1, SYNJ1, CLDN8, PAXBP1, URB1) 0.191300327166985 33 0.0811971972945178 0.641301707337222 2133 0.251250540710283 2 2 0 -7.16100078883822 LTS-020 NA NA NA NA LTS-020 chr21 34542357 34542562 206 * LINC01548 NA 0 NA 0.66359229446506 5 0.0658619768910712 2 NA NA -5.76465970215862 LTS-020 chr21 34542563 34602673 60111 * IFNAR2 NA 0 NA 1.246 1 NA NA NA NA NA LTS-020 chr21 34602674 34602934 261 * IFNAR2 0.496 1 NA 0.904387373063134 6 0.339812693504328 3 3 0 -5.76441411138402 LTS-020 chr21 34602935 35270206 667272 * c(IL10RB-AS1, GART, DONSON, IFNAR1, IFNAR2, IFNGR2, IL10RB, DNAJC28, ITSN1, SON, TMEM50B, CRYZL1) 0.416571767713883 25 0.132619970844012 0.947093937871973 1464 1.61123318930044 4 2 2 -6.75992676182831 LTS-020 chr21 35270207 35271024 818 * DONSON 0 1 NA 1.08859025279683 21 1.17748201280367 4 4 0 -5.76441247003546 LTS-020 chr21 35271025 36161901 890877 * c(LINC00649, LINC01426, LINC00310, RCAN1, DONSON, KCNE1, ATP5O, LINC00160, SMIM11A, CLIC6, MRPS6, SLC5A3, RUNX1, KCNE2) 0.344067443516537 15 0.212929386909191 0.95974158452146 737 0.371719355014103 3 2 1 -6.73914667564357 LTS-020 chr21 36161902 37420650 1258749 * c(LOC100506403, SETD4, MIR802, RUNX1-IT1, RUNX1) 0.467 1 NA 0.947123434624457 277 0.172669634940641 3 3 0 -5.76606488638719 LTS-020 chr21 37420651 41383839 3963189 * c(LOC100133286, CBR3-AS1, BRWD1-AS1, DSCR4, DSCR3, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DYRK1A, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, DSCR10, HLCS, HMGN1, KCNJ6, KCNJ15, LINC00114, PCP4, PIGP, RIPPLY3, BRWD1, SETD4, SH3BGR, SIM2, TTC3, WRB, CHAF1B, DSCR8, PSMG1, CBR1, CBR3, DOPEY2) 0.45310206388032 108 0.0543055436708058 0.986641310981108 3070 0.27984270789454 3 2 1 -8.02493503081747 LTS-020 chr21 41383840 41452182 68343 * DSCAM 0 1 NA 1.04854105514583 77 0.47911039829309 3 3 0 -5.76597615300365 LTS-020 chr21 41452183 42860416 1408234 * c(MIR3197, DSCAM-AS1, MIR4760, DSCAM-IT1, DSCAM, PLAC4, BACE2, LINC00323, MX1, MX2, FAM3B, TMPRSS2) 0.260053815283172 13 0.223759600854039 1.0050630781929 591 0.402434098280277 3 2 1 -6.87684442421826 LTS-020 chr21 42860417 42866332 5916 * TMPRSS2 0.469 1 NA 1.05207231661723 9 0.147870532711708 3 3 0 -5.76593704552403 LTS-020 chr21 42866333 48022375 5156043 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, RRP1B, DIP2A, POFUT2, ICOSLG, C2CD2, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, NA NA NA NA NA NA NA NA NA LTS-020 KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, NDUFV3, ZBTB21, PCNT, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 UMODL1, ABCG1) 0.434369096991822 245 0.0930821593580969 0.969369011800241 7387 0.300033745228601 3 2 1 -7.05346164044765 LTS-020 NA NA NA NA LTS-020 chr21 48022376 48084993 62618 * c(PRMT2, S100B) NA 0 NA 0.906709177672525 95 0.298459300554273 3 NA NA -5.76553687480319 LTS-020 chr22 16157787 16157827 41 * character(0) 0.296 1 NA 0.551 1 NA NA NA NA NA LTS-020 chr22 16157828 20303796 4145969 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-020 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.419198765616401 125 0.114258591827712 0.94430564672233 4464 0.297036444285467 3 2 1 -6.86665093746999 LTS-020 NA NA NA NA LTS-020 chr22 20303797 20305193 1397 * DGCR6L NA 0 NA 0.95 1 NA NA NA NA NA LTS-020 chr22 20305194 20398710 93517 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.440236469825185 39 0.3220976059307 1 NA NA -5.77397747467613 LTS-020 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.008 1 NA NA NA NA NA LTS-020 chr22 20717835 22681765 1963931 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, VPREB1, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, BMS1P20) 0.421383535484123 55 0.111544477094881 0.933250060092556 2531 0.252769690175535 3 2 1 -6.89010816053148 LTS-020 chr22 22681766 22712261 30496 * character(0) 0.403 1 NA 1.04373673263813 37 0.350802205933326 3 3 0 -5.76558891974957 LTS-020 chr22 22712262 23047069 334808 * c(ZNF280A, ZNF280B, PRAME, POM121L1P, LL22NC03-63E9.3, GGTLC2) 0.196139932522516 9 0.163157217976336 0.964906891297823 377 0.706234632780197 2 2 0 -6.76503541074001 LTS-020 chr22 23047070 23054916 7847 * character(0) 0.425 1 NA 0.942253538572848 7 0.120646867620617 3 3 0 -5.76446681608999 LTS-020 chr22 23054917 24325002 1270086 * c(DDTL, IGLL5, ZDHHC8P1, C22orf15, DDT, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, MIR650, ZNF70, GUSBP11, DERL3, RAB36) 0.449695549371684 53 0.0470398805572963 0.925393700448987 1394 0.253106184612299 2 1 1 -8.11703225817638 LTS-020 chr22 24325003 24325006 4 * character(0) 0.34 1 NA 2.512 1 NA NA NA NA NA LTS-020 chr22 24325007 24384316 59310 * c(GSTTP1, GSTT1, LOC391322) 0.416382362498344 6 0.0907995961811872 1.64209706674995 73 0.581516320798172 6 3 3 -6.77363687646416 LTS-020 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.88 1 NA NA NA NA NA LTS-020 chr22 24400149 32621619 8221471 * c(LOC100128531, MIR548J, MIR3200, MIR3199-2, MIR3199-1, MIR3653, MIR3928, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL2, RFPL1S, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, SEC14L2, SEZ6L, PATZ1, PITPNB, PISD, OSBP2, AP1B1P1, TFIP11, PRR14L, NA NA NA NA NA NA NA NA NA LTS-020 TMEM211, C22orf31, C22orf24, RHBDD3, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, SLC35E4, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, BCRP3, ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TOP1P2, SEC14L6, XBP1, YWHAH, GUCD1, TBC1D10A, KREMEN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, GAL3ST1, DEPDC5, SFI1) 0.417854466112843 186 0.128764366367085 0.928586685475777 9071 0.294246957834385 3 2 1 -6.87486065338418 LTS-020 NA NA NA NA LTS-020 chr22 32621620 32630888 9269 * SLC5A4 0 1 NA 0.839397210061257 21 0.305882517129885 3 3 0 -5.76539637530843 LTS-020 chr22 32630889 35661568 3030680 * c(HMGXB4, LARGE-AS1, MIR4764, RFPL3S, RFPL3, BPIFC, FBXO7, LOC339666, RTCB, SLC5A4, TIMP3, SYN3, ISX, LARGE1) 0.291946507404735 22 0.214074348859986 0.960157030238301 886 0.508313975952087 3 2 1 -6.8030630202843 LTS-020 chr22 35661569 35679951 18383 * HMGXB4 0.494 1 NA 1.0648884171877 3 0.5737092759694 4 4 0 -5.76476759045147 LTS-020 chr22 35679952 40058186 4378235 * c(HMGXB4, TOM1, MIR3909, LL22NC01-81G9.3, LOC100506472, MIR4534, APOBEC3A_B, DNAL4, CACNG2, TAB1, DDX17, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, ELFN2, C1QTNF6, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, TMPRSS6, APOBEC3H, APOBEC3A, APOBEC3F, GCAT, CBX6, NPTXR, CBX7, SLC16A8, RBFOX2, RASD2, SH3BP1, MAFF, APOL2, CBY1, SUN2, TXN2, TMEM184B, GGA1, SNORD43, CYTH4, APOBEC3C, CARD10, H1F0, HMOX1, TEX33, IL2RB, KCNJ4, NA NA NA NA NA NA NA NA NA LTS-020 LGALS1, LGALS2, LOC400927, MB, MCM5, MFNG, MGAT3, MPST, MYH9, ATF4, NCF4, EIF3L, PDGFB, POLR2F, MIEF1, TOMM22, PDXP, PVALB, RAC2, APOBEC3G, RPL3, FAM227A, SOX10, SSTR3, MIR658, MIR659, TST, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, PLA2G6, C22orf23, GALR3, MICALL1, APOL1, EIF3D, CACNA1I, SYNGR1, RPS19BP1, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.431663839543108 155 0.0869295840117494 0.93401449346352 7130 0.372841977246359 3 2 1 -7.07203332198705 LTS-020 NA NA NA NA LTS-020 chr22 40058187 40139576 81390 * c(ENTHD1, CACNA1I) 0 1 NA 0.937507014464113 205 0.415901471910881 3 3 0 -5.76450456081983 LTS-020 chr22 40139577 41755999 1616423 * c(LOC100130899, MIR1281, MIR4766, SLC25A17, FAM83F, ENTHD1, DNAJB7, CHADL, ADSL, EP300, TNRC6B, ZC3H7B, SGSM3, MCHR1, MKL1, RANGAP1, XPNPEP3, ST13, L3MBTL2, GRAP2, RBX1) 0.307647619106877 21 0.226015117488484 0.933901934694137 2200 0.663349951006644 3 2 1 -6.77302733452475 LTS-020 chr22 41756000 41792601 36602 * c(ZC3H7B, TEF) 0.426 1 NA 0.990913440656807 63 0.21271042652027 3 3 0 -5.76507863365039 LTS-020 chr22 41792602 42779752 987151 * c(NDUFA6-AS1, TOB2, TNFRSF13C, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, WBP2NL, POLR3H, XRCC6, CSDC2, DESI1, LINC00634, OGFRP1, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, SREBF2, TCF20, TEF, CENPM, C22orf46, CCDC134, PHF5A, SMDT1) 0.440221727755832 40 0.106343755015371 0.937680484492515 2002 0.261443254465291 3 2 1 -7.01911243240283 LTS-020 chr22 42779753 42779879 127 * NFAM1 0.062 1 NA 0.924266041362841 3 0.207321811041032 3 3 0 -5.76441199392794 LTS-020 chr22 42779880 42909005 129126 * c(NFAM1, RRP7A, SERHL) 0.333626559393635 4 0.231980423024588 0.940781639825386 131 0.448208983374331 3 2 1 -6.74434646003669 LTS-020 chr22 42909006 42910107 1102 * RRP7A NA 0 NA 0.457 1 NA NA NA NA NA LTS-020 chr22 42910108 51183255 8273148 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, NA NA NA NA NA NA NA NA NA LTS-020 PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-020 POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.237965468313187 247 0.0532727183647594 0.571916052934504 7992 0.159276610939505 1 1 0 -9.21406764793036 LTS-020 NA NA NA NA LTS-020 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.492372293510038 69 0.102538727011234 1 NA NA -5.76537288719528 LTS-020 chrX 2699993 2700027 35 * XG 0.187 1 NA 1.625 1 NA NA NA NA NA LTS-020 chrX 2700028 7066240 4366213 * c(LINC01546, MIR4770, MIR4767, MXRA5, ARSH, LOC389906, STS, ARSD, ARSE, ARSF, VCX3A, PRKX, NLGN4X, XG, PUDP, GYG2) 0.194947352242831 28 0.0827044524498316 0.651504151271725 943 0.272783339240453 2 2 0 -7.14742093559246 LTS-020 chrX 7066241 7137389 71149 * STS NA 0 NA 1.175 1 NA NA NA NA NA LTS-020 chrX 7137390 7270808 133419 * STS 0.156271805298713 3 0.264426423288849 1.08701883811494 113 0.457836061141063 3 3 0 -6.74024983528669 LTS-020 chrX 7270809 7867378 596570 * c(VCX, STS, PNPLA4) 0.498 1 NA 1.05115982101557 61 0.259478650268871 3 3 0 -5.81314650681407 LTS-020 chrX 7867379 16873058 9005680 * c(GS1-600G8.3, LINC01203, CLDN34, PIR-FIGF, MSL3, CA5B, CLCN4, ASB11, ASB9, MOSPD2, TCEANC, FAM9A, FAM9B, FAM9C, FANCB, VEGFD, EGFL6, AMELX, GLRA2, GPM6B, GRPR, HCCS, CA5BP1, TLR8-AS1, SHROOM2, ANOS1, ARHGAP6, VCX3B, MID1, GPR143, TLR7, TLR8, VCX2, PIGA, GEMIN8, TXLNG, WWC3, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TBL1X, TMSB4X, MIR651, S100G, PNPLA4, ZRSR2, OFD1, PIR, INE2, NA NA NA NA NA NA NA NA NA LTS-020 AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.388879052728888 89 0.169308270168037 1.0506962078739 4528 0.357980107340471 3 2 1 -7.10777467949152 LTS-020 NA NA NA NA LTS-020 chrX 16873059 16876980 3922 * RBBP7 0.469 1 NA 1.00136029319829 11 0.130611081250614 3 3 0 -5.76472260690764 LTS-020 chrX 16876981 19362068 2485088 * c(PHKA2-AS1, MIR4768, ADGRG2, SCML2, RAI2, BEND2, NHS, PDHA1, PHKA2, PPEF1, RBBP7, RS1, SCML1, CDKL5, REPS2) 0.189338599525955 9 0.2244176414139 1.10204819363562 1413 0.299047479917962 4 4 0 -6.87008854954344 LTS-020 chrX 19362069 19364803 2735 * PDHA1 0.451 1 NA 0.946070705314277 12 0.345817301563421 3 3 0 -5.76441129453512 LTS-020 chrX 19364804 19482454 117651 * c(MAP3K15, PDHA1) 0.472962624011402 9 0.0295032954844784 1.09957141983621 222 0.304239939001226 4 2 2 -9.46271532472976 LTS-020 chrX 19482455 19933725 451271 * c(CXorf23, SH3KBP1, MAP3K15) 0 1 NA 1.03552213183159 275 0.474690342036603 3 3 0 -5.77231241143227 LTS-020 chrX 19933726 24002662 4068937 * c(SCARNA9L, MIR23C, PTCHD1-AS, PHEX-AS1, PRDX4, PTCHD1, ZNF645, DDX53, EIF1AX, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, YY2, MBTPS2, PHEX, RPS6KA3, SAT1, SMS, LOC729609, APOO, KLHL15) 0.268275046567764 23 0.226898786441306 1.07346045902933 2044 0.351095622019366 4 3 1 -6.92501676652146 LTS-020 chrX 24002663 24073143 70481 * c(EIF2S3, KLHL15) 0.484 1 NA 0.961120743560481 117 0.151040656739207 3 3 0 -5.76449056496001 LTS-020 chrX 24073144 41375129 17301986 * c(SUPT20HL1, LOC100132831, ZFX-AS1, ATP6AP2, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, CXorf38, DDX3X, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF2S3, TAB3, HYPM, GK, LINC01281, CFAP47, MAGEB18, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, OTC, PDK3, FTHL17, POLA1, BCOR, PRRG1, MID1IP1, NYX, RPGR, NA, SCARNA23, DYNLT3, TSPAN7, XK, NA NA NA NA NA NA NA NA NA LTS-020 ZFX, CXorf21, USP9X, TMEM47, SRPX, CASK, MED14, SYTL5, PCYT1B) 0.391166977651663 57 0.162011186918425 1.06344278950475 4887 0.309574754273324 4 2 2 -7.73261699428657 LTS-020 NA NA NA NA LTS-020 chrX 41375130 41376749 1620 * CASK 0 1 NA 0.889671695419523 36 0.580918632118868 3 3 0 -5.76442450668783 LTS-020 chrX 41376750 47917687 6540938 * c(SNORA11C, UXT-AS1, MIR4769, FUNDC1, ELK1, GPR82, GPR34, ZNF81, ARAF, SPACA5, LOC392452, CXXC1P1, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, CDK16, CFP, NDUFB11, KRBOX4, CHST7, ZNF630, RP2, DUSP21, ZNF674, SYN1, TIMP1, LINC01545, UBA1, KDM6A, ZNF182, ZNF41, ZNF157, CXorf36, EFHC2, PPP1R2P9, USP11, RBM10, UXT, SLC9A7, INE1, CASK, RGN, JADE3) 0.24961207672816 15 0.226339399596102 1.07293680434939 3087 0.288812093949456 4 3 1 -7.17441832089364 LTS-020 chrX 47917688 47927449 9762 * c(SPACA5, ZNF630) 0.464 1 NA 1.02993107582244 53 0.251262244536964 3 3 0 -5.7649421663791 LTS-020 chrX 47927450 53250104 5322655 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, KCND1, SPACA5, USP27X, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, PLP2, GPR173, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA NA NA NA NA NA NA NA NA LTS-020 RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYP, MIR532, TFE3, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, CACNA1F, MAGIX, MAGED4B, KDM5C, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, MAGED1, PAGE4) 0.39995885994183 34 0.153195903497727 1.0364019124646 4135 0.262085974431536 3 2 1 -7.06078041009391 LTS-020 NA NA NA NA LTS-020 chrX 53250105 54469825 1219721 * c(HUWE1, RIBC1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, FAM120C, WNK3, KDM5C, SMC1A, TSR2) 0.476825001053815 5 0.0253239017530869 0.985156173851092 1733 0.220574567428249 4 2 2 -10.6868027372784 LTS-020 chrX 54469826 54565501 95676 * c(FGD1, GNL3L, TSR2) 0 1 NA 1.001911506165 169 0.417911445393012 3 3 0 -5.76517213649672 LTS-020 chrX 54565502 57515550 2950049 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, USP51, SPIN3, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, LINC01420, SNORA11, TRO, FAM104B, PAGE5) 0.257969395926217 15 0.198392276155336 1.01404204522922 1328 0.321584605940219 3 2 1 -6.96535822516752 LTS-020 chrX 57515551 57937169 421619 * c(FAAH2, ZXDB, ZXDA) NA 0 NA 0.981366531177657 213 0.224176234466471 3 NA NA -5.76819602484042 LTS-020 chrX 61999880 62519369 519490 * character(0) 0 1 NA 1.08557795817765 15 0.270553788332288 4 4 0 -5.79433738140813 LTS-020 chrX 62519370 66765627 4246258 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, AR, MIR223, MSN, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, LINC01278, HEPH) 0.132537499571925 9 0.215245854263858 1.00789441403875 1280 0.44177913634177 3 3 0 -6.77355912723264 LTS-020 chrX 66765628 66914801 149174 * AR 0.384 1 NA 1.0374429991282 49 0.180734986109723 3 3 0 -5.78322778145336 LTS-020 chrX 66914802 70518246 3603445 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, GJB1, FAM155B, YIPF6, SNX12, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ARR3, FOXO4, NONO, OPHN1, P2RY4, PDZD11, NLGN3, GDPD2, TEX11, BCYRN1, PJA1, SLC7A3, ZMYM3, STARD8, MED12) 0.368389938602354 30 0.192605904589549 1.01674652359109 2826 0.289376297517155 3 2 1 -6.83346917225565 LTS-020 chrX 70518247 70520822 2576 * c(NONO, BCYRN1) 0 1 NA 1.07286244906868 39 0.623445711073443 4 4 0 -5.76444663512661 LTS-020 chrX 70520823 72225511 1704689 * c(ITGB1BP2, INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, CITED1, NONO, PHKA1, PIN4, ERCC6L, HDAC8, BCYRN1, RPS4X, PABPC1L2B, FAM226B, TAF1, OGT, ACRC) 0.150123531465738 6 0.24231418998207 1.00341163312455 1442 0.270279813187499 3 3 0 -6.76747290618219 LTS-020 chrX 72225512 73062087 836576 * c(CDX4, MAP2K4P1, PABPC1L2A, NAP1L2, CHIC1, PABPC1L2B, NAP1L6, XIST, TSIX) 0 2 0 0.841756032107313 470 0.257229322797083 0 0 0 -Inf LTS-020 chrX 73062088 73095032 32945 * XIST 0.0984834716244907 2 0.119501046020527 0.657235242494155 213 0.304020335910283 4 4 0 -6.82279974416296 LTS-020 chrX 73095033 73095347 315 * character(0) NA 0 NA 0.963 1 NA NA NA NA NA LTS-020 chrX 73095348 77302558 4207211 * c(MIR374B, FTX, MIR374C, COX7B, UPRT, MAGEE2, ZDHHC15, ABCB7, TTC3P1, KIAA2022, ZCCHC13, PGAM4, MIR374A, MIR384, RLIM, PBDC1, ATP7A, ATRX, JPX, MAGEE1, SLC16A2, MIR545, MIR421, MAGT1, FGF16) 0.217396283771377 11 0.205039419713292 0.860652186522842 1627 0.256970856270125 3 3 0 -7.18985615379954 LTS-020 chrX 77302559 77381002 78444 * c(PGK1, ATP7A) 0.359 1 NA 0.87910863682048 119 0.125728790710638 3 3 0 -5.78465784805788 LTS-020 chrX 77381003 79698593 2317591 * c(MIR4328, CYSLTR1, FAM46D, ZCCHC5, P2RY10, LPAR4, TBX22, TAF9B, PGK1, GPR174, ITM2A) 0.373348946232327 10 0.140196845740393 0.845006748185247 466 0.255824673533529 3 2 1 -7.03641112250437 LTS-020 chrX 79698594 79941093 242500 * c(FAM46D, BRWD3) 0 1 NA 0.848148486402811 204 0.23309955753617 3 3 0 -5.80175193705126 LTS-020 chrX 79941094 85117818 5176725 * c(UBE2DNL, CHM, APOOL, HDX, CYLC1, BRWD3, RPS6KA6, SATL1, POU3F4, SH3BGRL, ZNF711, HMGN5, POF1B) 0.185495057413512 10 0.203925067937547 0.860204806849437 1000 0.338623824457894 3 3 0 -7.03609257035074 LTS-020 chrX 85117819 85219021 101203 * CHM 0.384 1 NA 0.919331159944659 89 0.253405788442045 3 3 0 -5.7657656956419 LTS-020 chrX 85219022 92927365 7708344 * c(CHM, DACH2, PABPC5, PCDH11X, NAP1L3, CPXCR1, KLHL4, TGIF2LX) 0.330861351224285 20 0.157642834146988 0.884546944401185 836 0.588406987452189 3 2 1 -6.83873885322565 LTS-020 chrX 92927366 99664018 6736653 * c(DIAPH2, FAM133A, RPA4, XRCC6P5, NAP1L3, PCDH19, BRDTP1) 0.464008287992376 6 0.0191902753150304 1.05556399215773 586 0.288368842427009 4 2 2 -11.2644271639131 LTS-020 chrX 99664019 100081783 417765 * c(CSTF2, SRPX2, PCDH19, TNMD, TSPAN6, SYTL4) 0 1 NA 1.05667911652338 355 0.205115497220003 3 3 0 -5.82501947167182 LTS-020 chrX 100081784 100493941 412158 * c(CSTF2, DRP2, CENPI, NOX1, ARL13A, XKRX, TMEM35A, TRMT2B) 0.23842174378182 11 0.231945800879116 1.08532629713396 512 4.12740491714906 6 5 1 -6.73757348973847 LTS-020 chrX 100493942 100505617 11676 * DRP2 0.489 1 NA 1.09472294378461 49 0.293853389679021 4 4 0 -5.76487442743234 LTS-020 chrX 100505618 109931799 9426182 * c(ARMCX4, LINC00630, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, TCEAL2, RAB40A, TCEAL6, H2BFWT, TIMM8A, DRP2, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, GLA, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HNRNPH2, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, SLC25A53, GLRA4, TCEAL9, RAB9B, ARMCX1, ARMCX3, PLP1, TAF7L, ARMCX6, NUP62CL, TBC1D8B, NA NA NA NA NA NA NA NA NA LTS-020 CXorf57, RBM41, BEX1, NXT2, NXF5, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, RPL36A, ZCCHC18, ARMCX5, SERPINA7, SNORD96B, BTK, TDGF1P3, RNF128, MORC4, TCEAL4, ESX1, BHLHB9, TMEM164, ZMAT1, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, ARMCX2, AMMECR1) 0.349012740441978 44 0.205118070469135 1.03080195803378 5999 0.288438412643581 3 2 1 -7.1111646178135 LTS-020 NA NA NA NA LTS-020 chrX 109931800 109931856 57 * CHRDL1 0.415 1 NA 0.757 1 NA NA NA NA NA LTS-020 chrX 109931857 114239797 4307941 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, AMOT, DCX, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, MIR448, SNORA35, TRPC5, ALG13, CAPN6, CHRDL1) 0.0949662124536261 9 0.200423302038461 1.05446784333659 1191 0.402252884331962 3 3 0 -6.92602639931586 LTS-020 chrX 114239798 114424148 184351 * c(RBMXL3, IL13RA2, LRCH2) 0.47 1 NA 0.972473819222672 171 0.225285769370764 3 3 0 -5.76514230386605 LTS-020 chrX 114424149 114541557 117409 * c(RBMXL3, LUZP4, LRCH2) 0.47134476510152 9 0.0210640557453792 0.999595262056795 113 0.252966081085033 4 2 2 -10.7599260527283 LTS-020 chrX 114541558 114541631 74 * LUZP4 0.416 1 NA 1.2971269391962 3 0.548570262895587 5 5 0 -5.7644110919278 LTS-020 chrX 114541632 117773329 3231698 * c(MIR1277, SLC6A14, DOCK11, AGTR2, CT83, LUZP4, PLS3, WDR44, KLHL13) 0.164456382495315 9 0.220371277620292 1.0226419498556 831 0.37120743558126 3 3 0 -6.80253262693386 LTS-020 chrX 117773330 118108785 335456 * c(DOCK11, ZCCHC12, IL13RA1, LONRF3) 0.44 1 NA 1.01392432362571 251 0.273307592575403 3 3 0 -5.77411756179378 LTS-020 chrX 118108786 119571073 1462288 * c(ZBTB33, SLC25A5-AS1, PGRMC1, AKAP14, RHOXF1, NKAPP1, SLC25A43, SEPT6, ATP1B4, SNORA69, SLC25A5, SOWAHD, LAMP2, NDUFA1, TMEM255A, NKRF, KIAA1210, RPL39, CXorf56, UPF3B, UBE2A, MIR766, RNF113A, NKAP, LONRF3) 0.38646197589549 22 0.165054602011036 0.99670912512666 1487 0.301099048248818 3 2 1 -6.76058318333728 LTS-020 chrX 119571074 119571992 919 * LAMP2 0 1 NA 0.960906140869457 15 0.194485695397594 3 3 0 -5.76441072438837 LTS-020 chrX 119571993 123182795 3610803 * c(STAG2, CT47A11, GLUD2, GRIA3, MCTS1, C1GALT1C1, XIAP, LAMP2, THOC2, CT47B1, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CUL4B) 0.196344955920876 10 0.230859384811525 0.986480914673875 886 0.353343774739647 3 3 0 -6.77919233337991 LTS-020 chrX 123182796 123510464 327669 * c(TENM1, STAG2, SH2D1A) 0.474 1 NA 1.01169430138794 225 0.246659175642366 3 3 0 -5.77521198704156 LTS-020 chrX 123510465 128724525 5214061 * c(TEX13C, PRR32, TENM1, DCAF12L1, ACTRT1, DCAF12L2, OCRL, SMARCA1) 0.461817105660911 11 0.0253495562091331 1.03033724943918 727 0.259932731372677 4 2 2 -10.2230327810354 LTS-020 chrX 128724526 128938102 213577 * c(OCRL, ZDHHC9, SASH3, XPNPEP2, APLN) 0 1 NA 1.03816653047664 325 0.289222113636119 3 3 0 -5.77512289593815 LTS-020 chrX 128938103 130678596 1740494 * c(ENOX2, UTP14A, GPR119, ARHGAP36, ELF4, OR13H1, IGSF1, ZDHHC9, RBMX2, ZNF280C, BCORL1, SLC25A14, AIFM1, RAB33A) 0.408033842239438 9 0.209872050968627 1.00537612669746 1325 0.313292844545795 3 2 1 -6.78589218983804 LTS-020 chrX 130678597 131206868 528272 * c(FIRRE, OR13H1, IGSF1, STK26) 0 1 NA 1.01885463178265 57 0.559897183320049 3 3 0 -5.76866866727443 LTS-020 chrX 131206869 133699916 2493048 * c(MIR450B, LINC00629, HS6ST2-AS1, PLAC1, GPC4, GPC3, HPRT1, CCDC160, MIR106A, MIR19B2, MIR92A2, MIR424, TFDP3, STK26, MIR450A1, MBNL3, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, RAP2C, MIR542, USP26, PHF6, MIR503HG, HS6ST2, FRMD7) 0.153178129024711 13 0.202541828538434 1.03630394539219 1115 0.558496947203028 3 3 0 -6.76566259401547 LTS-020 chrX 133699917 134154976 455060 * c(PLAC1, FAM122B, FAM122C, FAM127C, MOSPD1, SMIM10) 0.44 1 NA 0.966281581275825 291 0.199968388958189 3 3 0 -5.76538379791131 LTS-020 chrX 134154977 135390818 1235842 * c(LINC00633, SLC9A6, ADGRG4, INTS6L, ZNF449, FHL1, FAM127B, SMIM10L2A, FAM127C, CT45A3, CT45A5, CT45A6, CT45A1, CT55, SAGE1, SMIM10L2B, CT45A2, ZNF75D, MAP7D3, FAM127A, MMGT1) 0.393835117836529 9 0.151205158642157 0.995619595594546 934 0.31762781539471 3 2 1 -6.76702601868205 LTS-020 chrX 135390819 135482074 91256 * ADGRG4 0 1 NA 1.03673816095865 209 0.402086114320103 3 3 0 -5.76670434554525 LTS-020 chrX 135482075 138727877 3245803 * c(MIR934, LINC00892, FGF13-AS1, ADGRG4, LINC00889, F9, FGF13, SNORD61, RBMX, HTATSF1, MCF2, VGLL1, MIR504, SRD5A1P1, BRS3, ZIC3, GPR101, ARHGEF6, CD40LG) 0.209841075009521 11 0.240285852494671 1.01795801521214 921 0.3368802066249 3 3 0 -6.84388679919177 LTS-020 chrX 138727878 138880835 152958 * c(ATP11C, MCF2) 0.443 1 NA 0.978688013373928 167 0.209729540590338 3 3 0 -5.76568277033515 LTS-020 chrX 138880836 148081601 9200766 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, NA, FMR1, AFF2, LDOC1, ATP11C, LINC00632, CXorf66, LOC389895, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SLITRK2, TMEM257, MAGEC1) 0.380618605037587 24 0.176694400680622 1.06795868052713 1568 0.349634193842522 4 2 2 -7.15970012393482 LTS-020 chrX 148081602 148560247 478646 * AFF2 0 1 NA 1.02305959127034 51 0.493129178478283 3 3 0 -5.7700340584246 LTS-020 chrX 148560248 149831978 1271731 * c(LINC00893, LINC00894, MIR2114, MAMLD1, MAGEA8-AS1, IDS, MAGEA8, MAGEA11, MTM1, CXorf40B, TMEM185A, CXorf40A) 0.213606620381592 11 0.238815866687744 1.01804018187223 637 0.503997014706057 3 3 0 -6.7922380937882 LTS-020 chrX 149831979 149932521 100543 * c(MTM1, MTMR1) 0.377 1 NA 1.05448916875961 161 0.251357987516209 3 3 0 -5.7738099904464 LTS-020 chrX 149932522 152132533 2200012 * c(CSAG4, MIR4330, MAGEA10-MAGEA5, CETN2, CNGA2, PASD1, CSAG1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA10, MAGEA12, NSDHL, GABRQ, MIR452, MIR767, ZNF185, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.444059387324167 36 0.084884047896537 1.06604997927526 1435 0.375665020928626 4 2 2 -7.04129314610514 LTS-020 chrX 152132534 152614615 482082 * c(NA, NA, ZNF275, PNMA5, PNMA3, MAGEA1, ZNF185) 0 1 NA 1.02846844813546 263 0.273172442146086 3 3 0 -5.7857397960502 LTS-020 chrX 152614616 152967615 353000 * c(BCAP31, ZNF275, TREX2, PNCK, ZFP92, DUSP9, ATP2B3, HAUS7, BGN, SLC6A8, FAM58A) 0.234794596003182 9 0.246436604423937 1.03438048644359 749 0.338502344281434 4 3 1 -6.81628147359745 LTS-020 chrX 152967616 153010090 42475 * c(BCAP31, ABCD1) 0.444 1 NA 1.04523381913084 113 0.198616144327722 3 3 0 -5.76969454792488 LTS-020 chrX 153010091 153284483 274393 * c(MIR3202-2, MIR3202-1, ABCD1, SRPK3, HCFC1, IDH3G, IRAK1, L1CAM, ARHGAP4, PLXNB3, AVPR2, PDZD4, RENBP, SSR4, NAA10, TMEM187) 0.447221881102654 24 0.104313273642289 1.01118793116784 1313 0.212820069740636 4 2 2 -6.9788427618157 LTS-020 chrX 153284484 153292180 7697 * c(MIR718, IRAK1, MECP2) 0.434 1 NA 1.01337359848487 123 0.250420562155254 3 3 0 -5.76467104457648 LTS-020 chrX 153292181 154488373 1196193 * c(SMIM9, CMC4, RAB39B, GAB3, TEX28, DKC1, DNASE1L1, EMD, F8, FLNA, G6PD, OPN1MW, GDI1, SNORA70, CTAG2, MECP2, MPP1, MTCP1, ATP6AP1, PLXNA3, OPN1LW, FAM3A, RPL10, FUNDC2, SNORA36A, SNORA56, TAZ, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.199668170891289 9 0.21867943306229 1.00369168768444 2315 0.3439451731223 3 3 0 -6.78325883880692 LTS-020 chrX 154488374 154774986 286613 * c(RAB39B, CLIC2, TMLHE) NA 0 NA 0.999071486867193 189 0.218142460219417 3 NA NA -5.77182123809106 LTS-020 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.459424362087323 25 0.180176552303567 1 NA NA -5.86613931912931 LTS-020 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.902362598384294 19 0.33003172805121 3 NA NA -5.89926854040605 LTS-020 chr1 65893 777273 711381 * c(LOC100288069, LINC01128, LOC729737, OR4F5, LINC00115) 0 1 NA 0.753835232549686 29 0.335727894598919 2 2 0 -5.77083280835654 LTS-021 chr1 777274 1593136 815863 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.153726442684152 59 0.139104775315185 0.791530473126406 2946 0.507172152034611 4 4 0 -7.08364947224934 LTS-021 chr1 1593137 1596067 2931 * c(SLC35E2B, CDK11B) NA 0 NA 0.16996559421955 67 0.187731453405974 0 NA NA -5.81752570756725 LTS-021 chr1 1596068 1596425 358 * c(SLC35E2B, CDK11B) NA 0 NA 0.605 1 NA NA NA NA NA LTS-021 chr1 1596426 1608309 11884 * c(SLC35E2B, CDK11B) 0.0861147142180933 4 0.1875 1.05764997570916 57 0.5232164297218 14 14 0 -6.75765153289436 LTS-021 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.162 1 NA NA NA NA NA LTS-021 chr1 1630372 1636296 5925 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0 2 0 0.397090971049836 56 0.496428477669803 0 0 0 -Inf LTS-021 chr1 1636297 1646681 10385 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.318035172181468 56 0.366538475771343 0 NA NA -5.77219252424586 LTS-021 chr1 1646682 1647814 1133 * c(CDK11A, SLC35E2B, CDK11B) 0.395 1 NA 0.851932774541841 3 0.375920647654972 2 2 0 -5.76444176847192 LTS-021 chr1 1647815 1661844 14030 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.401661332344205 12 0.0797205345965745 0.660245625857555 110 0.400261535537319 2 1 1 -6.91306920963478 LTS-021 chr1 1661845 1693401 31557 * c(NADK, SLC35E2B, SLC35E2) 0 1 NA 0.798440929841717 127 0.407872399027274 2 2 0 -5.76444030632729 LTS-021 chr1 1693402 2702491 1009090 * c(LOC100129534, NA, TTC34, RER1, LOC115110, FAM213B, CALML6, FAAP20, GABRD, GNB1, TMEM52, HES5, PEX10, PANK4, PRKCZ, SKI, NADK, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2) 0.120848168502368 45 0.13308623694675 0.750428072532759 1598 0.458103646690362 3 3 0 -7.46171530835381 LTS-021 chr1 2702492 3354476 651985 * c(TTC34, MIR4251, ACTRT2, LINC00982, PRDM16) 0.131501620998359 8 0.125371448105221 0.478263309613039 292 0.280067121526076 0 0 0 -8.24044075436739 LTS-021 chr1 3354477 9909496 6555020 * c(LINC01134, MIR4252, ENO1-AS1, MIR4689, MIR4417, UTS2, PARK7, ACOT7, TPRG1L, PHF13, CCDC27, SLC2A7, DFFB, MEGF6, TMEM201, ENO1, CLSTN1, CAMTA1, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, TNFRSF9, GPR153, SMIM1, RNF207, HES3, MIR34A, RERE, WRAP73, SLC45A1, PIK3CD, ERRFI1, HES2, DNAJC11, AJAP1, CTNNBIP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, PIK3CD-AS1, SLC2A5, MIR551A, TP73, LINC01346, NA NA NA NA NA NA NA NA NA LTS-021 CA6, NOL9, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, KCNAB2, TNFRSF25, PER3, THAP3, VAMP3, H6PD, CEP104, KLHL21) 0.119610910503708 133 0.136656981773995 0.787695856337732 5721 0.539806024829252 2 2 0 -7.63117471316041 LTS-021 NA NA NA NA LTS-021 chr1 9909497 10043142 133646 * c(CTNNBIP1, NMNAT1, LZIC) 0.296 1 NA 0.716545427857373 144 0.353459191640846 2 2 0 -5.76983035097311 LTS-021 chr1 10043143 12726022 2682880 * c(NPPA-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, RBP7, CLCN6, CORT, C1orf127, DFFA, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, DRAXIN, CENPS, MTHFR, NPPA, NPPB, PEX14, PGD, PLOD1, EXOSC10, CASZ1, VPS13D, AGTRAP, DISP3, MIIP, NMNAT1, SRM, SNORA59B, TNFRSF1B, KIAA2013, DHRS3, FBXO44, TNFRSF8, MFN2) 0.179998474361244 142 0.12436817222871 0.787799873490461 4517 0.543434763538792 3 3 0 -7.13025978697573 LTS-021 chr1 12726023 13910664 1184642 * c(PDPN, LRRC38, AADACL3, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, C1orf158) 0.345415572075066 21 0.0958070481550834 0.519530339753168 403 0.391548892606226 0 0 0 -6.77351640169836 LTS-021 chr1 13910665 13912032 1368 * PDPN NA 0 NA 1.035 1 NA NA NA NA NA LTS-021 chr1 13912033 16621337 2709305 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, FAM131C, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.189493950703304 53 0.147785061925426 0.79116899986174 2995 0.537060361511521 3 3 0 -7.02428262093467 LTS-021 chr1 16621338 16862454 241117 * c(CROCCP3, SZRD1, SPATA21, FBXO42, NECAP2) 0.484 1 NA 0.745834296557737 273 0.393417221585748 2 2 0 -5.7669244123541 LTS-021 chr1 16862455 16976698 114244 * c(MST1P2, NBPF1, CROCCP2) 0.317738147528432 12 0.118975519508949 0.827040024491908 96 0.4552409886918 2 2 0 -6.74702338970957 LTS-021 chr1 16976699 17012093 35395 * MST1P2 0.249658967173112 11 0.132248113923653 0.493399609808587 118 0.395472064283758 3 3 0 -6.79184238712236 LTS-021 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.07 1 NA NA NA NA NA LTS-021 chr1 17017583 17046605 29023 * ESPNP 0.310655827268433 8 0.135443187879115 1.69068370919492 72 0.982294986813501 8 6 2 -6.73303719799045 LTS-021 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.305 1 NA NA NA NA NA LTS-021 chr1 17081542 17085377 3836 * c(MST1L, CROCC) 0.277719123084702 9 0.12793791897288 0.430142694506118 108 0.393626746410592 6 5 1 -6.75403845455502 LTS-021 chr1 17085378 17085412 35 * c(MST1L, CROCC) 0.374 1 NA 1.15 1 NA NA NA NA NA LTS-021 chr1 17085413 17267496 182084 * c(MST1L, CROCC) 0.377690466276974 15 0.056941908576908 1.14899569686399 126 0.709500478695992 4 2 2 -6.80787851727463 LTS-021 chr1 17267497 17285281 17785 * CROCC 0 1 NA 1.33199141961121 65 0.835242924992484 6 6 0 -5.76444620447982 LTS-021 chr1 17285282 17298210 12929 * CROCC 0.163361822841534 2 0.261629509039023 1.09015048631122 49 0.467639328614122 7 7 0 -6.73744330759054 LTS-021 chr1 17298211 17298750 540 * CROCC NA 0 NA 0.636 1 NA NA NA NA NA LTS-021 chr1 17298751 18024038 725288 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, CROCC) 0.168921628472938 25 0.145626428462236 0.796209714456846 1077 0.421376589562469 3 3 0 -7.02116675479829 LTS-021 chr1 18024039 19199089 1175051 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.108523020512815 21 0.127120153136052 0.57314088283411 473 0.509148170149082 3 3 0 -8.0746542861119 LTS-021 chr1 19199090 21625613 2426524 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.142981304573723 92 0.138470713716277 0.778217558164363 3544 0.429654171212139 3 3 0 -7.39402986785631 LTS-021 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.154 1 NA NA NA NA NA LTS-021 chr1 21749805 21755255 5451 * character(0) 0.165 1 NA 0.260958758063325 46 0.233646431756327 0 0 0 -5.78645160095181 LTS-021 chr1 21755256 21755596 341 * character(0) NA 0 NA 0.618 1 NA NA NA NA NA LTS-021 chr1 21755597 24727951 2972355 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, LDLRAD2, WNT4, ASAP3, PNRC2, PITHD1, GRHL3, IL22RA1, RAP1GAP, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, USP48, NBPF3, STPG1, ZBTB40, CDC42) 0.153298180540353 112 0.150338078897324 0.692614316518795 4381 0.438844221197519 2 2 0 -7.4001566927985 LTS-021 chr1 24727952 24745751 17800 * c(NIPAL3, STPG1) NA 0 NA 1.384 1 NA NA NA NA NA LTS-021 chr1 24745752 25656425 910674 * c(RCAN3AS, SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, NIPAL3, RHD, RUNX3) 0.195445054498467 23 0.225226298143654 1.08669376966552 885 0.655679393727956 4 4 0 -6.74443889586187 LTS-021 chr1 25656426 25687901 31476 * c(TMEM50A, RSRP1, RHD) 0.495 1 NA 0.985335002202823 53 0.3501400590591 3 3 0 -5.76477180428953 LTS-021 chr1 25687902 26365549 677648 * c(MIR3917, PAQR7, EXTL1, TMEM50A, LDLRAP1, STMN1, PAFAH2, TMEM57, MTFR1L, MAN1C1, SELENON, RHCE, LOC646471, SLC30A2, AUNIP) 0.431604040457396 24 0.103072570115162 1.04706981413217 996 0.594965150113898 4 2 2 -7.02995023055859 LTS-021 chr1 26365550 26369018 3469 * SLC30A2 0 1 NA 1.2442380883759 15 0.505916659803437 5 5 0 -5.76441013846301 LTS-021 chr1 26369019 28220484 1851466 * c(MIR1976, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, FAM76A, FGR, WDTC1, STX12, IFI6, ZNF683, AHDC1, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, ZNF593, GPN2, AIM1L, PPP1R8, PIGV, RPA2, RPS6KA1, GPATCH3, ACTG1P20, CEP85, SLC9A1, SCARNA1, SLC30A2, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, TRIM63, SYTL1, FCN3, MAP3K6, UBXN11, THEMIS2) 0.296890195998889 84 0.211034578280582 1.09425488748189 3420 0.567040673233072 4 3 1 -6.75225085969169 LTS-021 chr1 28220485 28220576 92 * RPA2 0 1 NA 1.46942265119855 5 0.335489642165 6 6 0 -5.76441132964913 LTS-021 chr1 28220577 28764921 544345 * c(EYA3, DNAJC8, SMPDL3B, MED18, XKR8, PTAFR, RPA2, PHACTR4, SESN2, ATPIF1) 0.0917824353427297 12 0.203571947671549 1.06907788638334 712 0.602568832420466 6 6 0 -6.90786534934534 LTS-021 chr1 28764922 31345362 2580441 * c(MATN1-AS1, MIR4420, PTPRU, GMEB1, RCC1, RAB42, EPB41, RNU11, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, TRNAU1AP, SRSF4, PHACTR4, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, LAPTM5, SNHG3, SNHG12, SDC3) 0.143354676192037 39 0.190249069648249 1.39126019985441 1484 0.812468903308991 6 6 0 -6.7553148303979 LTS-021 chr1 31345363 31347399 2037 * SDC3 0.387 1 NA 1.29893168296249 25 0.488843526430834 5 5 0 -5.76441929618963 LTS-021 chr1 31347400 31973138 625739 * c(LINC01225, FABP3, SERINC2, ZCCHC17, SNORD103C, SNORD103A, NKAIN1, SNRNP40, SDC3, PUM1) 0.28994868398552 16 0.126658711372991 1.43566853415697 587 0.760914283677346 6 5 1 -6.73635156574137 LTS-021 chr1 31973139 31973163 25 * LINC01225 0 1 NA 4.926 1 NA NA NA NA NA LTS-021 chr1 31973164 33329041 1355878 * c(FAM229A, MIR4254, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, KPNA6, FNDC5, LINC01226, HCRTR1, HDAC1, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, KIAA1522, RBBP4, TINAGL1, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.0751300419981734 42 0.162567445129792 1.42968171216896 2724 0.811198945653817 8 8 0 -6.89384175506626 LTS-021 chr1 33329042 33475791 146750 * c(TMEM54, RNF19B, AK2, FNDC5, HPCA) 0.302 1 NA 1.27150405776086 234 0.597938134517665 5 5 0 -5.76451865985721 LTS-021 chr1 33475792 33958851 483060 * c(MIR3605, AZIN2, A3GALT2, ZNF362, PHC2, AK2, TRIM62, ZSCAN20) 0.262554175589262 16 0.183553080424528 1.26710987722369 565 0.65289842081817 6 5 1 -6.74579511812376 LTS-021 chr1 33958852 35260202 1301351 * c(CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, ZSCAN20, C1orf94) 0.221063612687379 19 0.187926699658256 1.07910769647727 784 0.64899865254741 4 4 0 -6.73378822281532 LTS-021 chr1 35260203 35260837 635 * GJA4 0 1 NA 1.06625589264898 15 1.05734815638442 4 4 0 -5.76441032696593 LTS-021 chr1 35260838 35321611 60774 * c(SMIM12, GJA4) 0.036 1 NA 1.29747900852413 53 1.59060794075414 5 5 0 -5.76443461659771 LTS-021 chr1 35321612 36770581 1448970 * c(TMEM35B, SMIM12, C1orf216, COL8A2, AGO3, AGO4, NCDN, AGO1, TRAPPC3, TEKT2, TFAP2E, ADPRHL2, MAP7D1, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZMYM1, KIAA0319L, ZMYM4, ZMYM6, THRAP3) 0.00503229109261776 28 0.043248145814614 1.63609164165198 2283 0.961482696814451 20 20 0 -8.53330094542933 LTS-021 chr1 36770582 36773405 2824 * c(SH3D21, THRAP3) 0.368 1 NA 1.59013677830795 30 0.863411975959267 7 7 0 -5.76441151275769 LTS-021 chr1 36773406 36941254 167849 * c(OSCP1, CSF3R, EVA1B, MRPS15, SH3D21, STK40, LSM10) 0.200353815346026 12 0.15550823324204 1.72725981622235 477 0.824979747463727 10 9 1 -6.73668942278137 LTS-021 chr1 36941255 36945023 3769 * CSF3R NA 0 NA 0.868 1 NA NA NA NA NA LTS-021 chr1 36945024 37270788 325765 * c(CSF3R, GRIK3) 0 2 0 0.888206490400637 151 0.651503445173429 0 0 0 -Inf LTS-021 chr1 37270789 37271748 960 * GRIK3 NA 0 NA 2.055 1 NA NA NA NA NA LTS-021 chr1 37271749 42620544 5348796 * c(NFYC-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, CAP1, SF3A3, TMCO2, ZNF684, C1orf122, COL9A2, MANEAL, CTPS1, CITED4, EDN2, SLFNL1, FHL3, SCMH1, MACF1, MYCBP, HEYL, RSPO1, EPHA10, GRIK3, GUCA2B, GNL2, LINC01343, ZFP69, BMP8A, INPP5B, MIR30C1, MIR30E, MTF1, MYCL, NDUFS5, NFYC, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, PPT1, HIVEP3, RLF, OXCT2, RRAGC, KIAA0754, NA NA NA NA NA NA NA NA NA LTS-021 SMAP2, MEAF6, EXO5, ZFP69B, BMP8B, SNORA55, LINC01137, PPIEL, DNALI1, AKIRIN1, YRDC, SNIP1, ZC3H12A, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3) 0.180477036116058 137 0.151675034960081 1.57139065696832 5775 0.860401031324858 7 7 0 -6.74143655413322 LTS-021 NA NA NA NA LTS-021 chr1 42620545 42621077 533 * GUCA2B NA 0 NA 0.976 1 NA NA NA NA NA LTS-021 chr1 42621078 42898880 277803 * c(FOXJ3, RIMKLA, GUCA2A, GUCA2B, ZMYND12) 0.157799019267408 6 0.0865309193294512 0.890446015548854 246 0.39465161748939 6 6 0 -6.98278992785599 LTS-021 chr1 42898881 45800027 2901147 * c(LOC100129924, KDM4A-AS1, MIR5584, PPIH, EBNA1BP2, KIF2C, MED8, ERMAP, PLK3, KLF17, TMEM125, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, DPH2, SZT2, BEST4, SNORD55, C1orf228, TCTEX1D4, SVBP, LINC01144, MPL, SLC2A1-AS1, FAM183A, MUTYH, YBX1, ZNF691, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, RPS8, P3H1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, CCDC30, UROD, ERI3, C1orf50, TMEM53, HECTD3, PPCS, HYI, ZMYND12, NA NA NA NA NA NA NA NA NA LTS-021 HPDL, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, CDC20) 0.168806073602163 83 0.199394373225656 1.26408912442382 4475 0.735274056448189 5 5 0 -6.7490431721362 LTS-021 NA NA NA NA LTS-021 chr1 45800028 45965307 165280 * c(TESK2, TOE1, CCDC163, MUTYH) 0.35 1 NA 1.21551955565968 217 0.604564449695089 5 5 0 -5.76456688707696 LTS-021 chr1 45965308 46487560 522253 * c(AKR1A1, CCDC163, CCDC17, MAST2, MMACHC, IPP, NASP, PRDX1, TMEM69, GPBP1L1, RPS15AP10) 0.366455796093178 29 0.0696161183985914 1.17625997306635 641 0.731623231334086 5 3 2 -6.74573485143704 LTS-021 chr1 46487561 46491456 3896 * MAST2 0 1 NA 1.2177753807877 21 1.1108590648254 5 5 0 -5.76441106652269 LTS-021 chr1 46491457 47074653 583197 * c(MKNK1-AS1, TSPAN1, LRRC41, DMBX1, KNCN, MOB3C, FAAH, MAST2, NSUN4, LURAP1, POMGNT1, FAAHP1, UQCRH, RAD54L, PIK3R3, MKNK1) 0.0753179729509094 23 0.155619582782677 1.36756513481873 1083 0.795806587810957 9 9 0 -6.87968866874373 LTS-021 chr1 47074654 47099235 24582 * c(MOB3C, MKNK1) 0.331 1 NA 1.54046810913908 115 0.630126461342892 7 7 0 -5.7644120101384 LTS-021 chr1 47099236 47282772 183537 * c(EFCAB14-AS1, CYP4B1, TEX38, ATPAF1, EFCAB14) 0.326362214968926 14 0.147852763113983 1.40357003651527 330 0.58179458612465 7 5 2 -6.73679213491031 LTS-021 chr1 47282773 47282836 64 * CYP4B1 NA 0 NA 1.204 1 NA NA NA NA NA LTS-021 chr1 47282837 47283568 732 * CYP4B1 NA 0 NA 0.981 1 NA NA NA NA NA LTS-021 chr1 47283569 47283795 227 * CYP4B1 0 1 NA 1.1977422829337 5 1.89702944099452 5 5 0 -5.76441019128807 LTS-021 chr1 47283796 47614553 330758 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0 7 0 0.911957115449372 336 0.773157808558491 0 0 0 -Inf LTS-021 chr1 47614554 47614560 7 * character(0) NA 0 NA 1.106 1 NA NA NA NA NA LTS-021 chr1 47614561 51061820 3447260 * c(LINC00853, PDZK1IP1, FAF1, ELAVL4, SLC5A9, FOXE3, FOXD2, TRABD2B, SKINT1L, CMPK1, SPATA6, DMRTA2, STIL, TAL1, BEND5, FOXD2-AS1, AGBL4) 0.132202979870517 44 0.180447428113832 1.20101355719187 1370 0.749801869323564 5 5 0 -6.82294390266493 LTS-021 chr1 51061821 51613740 551920 * c(CDKN2C, FAF1, C1orf185) 0.444 1 NA 1.22941852812052 115 0.445226623702008 5 5 0 -5.76467816058383 LTS-021 chr1 51613741 51924226 310486 * c(EPS15, TTC39A, RNF11, C1orf185) 0.320482534895909 13 0.189390689669089 1.38468783207694 479 0.66903640314836 7 5 2 -6.74012842122372 LTS-021 chr1 51924227 52231719 307493 * c(OSBPL9, EPS15) 0 1 NA 1.49899617474716 129 0.524269518569195 7 7 0 -5.7652041788038 LTS-021 chr1 52231720 52384395 152676 * c(MIR761, OSBPL9, NRDC, RAB3B) 0.0697759550159795 9 0.155757646503934 1.26792706231353 463 0.74016509835169 12 12 0 -6.83706745079963 LTS-021 chr1 52384396 52520740 136345 * c(KTI12, TXNDC12, RAB3B) 0.433 1 NA 1.29053168188557 151 0.743274850806254 5 5 0 -5.76460040053982 LTS-021 chr1 52520741 57002627 4481887 * c(LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, LRRC42, TCEANC2, PODN, CPT2, GLIS1, SLC25A3P1, LEXM, DHCR24, DIO1, TMEM61, CDCP2, CC2D1B, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, GPX7, FAM151A, FAM159A, MROH7, LDLRAD1, MAGOH, ZYG11A, ORC1, TXNDC12, MRPL37, HSPB11, YIPF1, C1orf123, TTC22, ECHDC2, NDC1, CYB5RL, SCP2, DMRTB1, SLC1A7, COA7, TTC4, LRP8, BSND, ZYG11B, PRPF38A, PLPP3, BTF3L4, NA NA NA NA NA NA NA NA NA LTS-021 ZFYVE9, TMEM59) 0.229877728973566 80 0.195392756042603 1.2620806820977 4475 0.732834821968105 5 5 0 -6.74733429186542 LTS-021 NA NA NA NA LTS-021 chr1 57002628 57158098 155471 * c(PRKAA2, PLPP3) NA 0 NA 1.4011206419259 38 0.57068161499202 6 NA NA -5.7644113211843 LTS-021 chr1 57158099 57174431 16333 * PRKAA2 0 1 NA 0.814920196954214 55 0.215994071810407 2 2 0 -5.76469319847514 LTS-021 chr1 57174432 58999627 1825196 * c(OMA1, DAB1, C1orf168, PRKAA2, C8A, C8B) 0.0845789203670612 9 0.186174649187262 0.868651238155969 531 0.421309193500134 3 3 0 -7.2564344514154 LTS-021 chr1 58999628 59041220 41593 * c(OMA1, DAB1, TACSTD2) 0.393 1 NA 0.910969025625106 29 0.493241365190487 3 3 0 -5.76450255087297 LTS-021 chr1 59041221 59148219 106999 * c(MYSM1, TACSTD2) 0.37834825406308 24 0.178782430928477 0.845115429401725 270 0.55866241025085 2 1 1 -6.74225315263956 LTS-021 chr1 59148220 59150808 2589 * MYSM1 NA 0 NA 1.927 1 NA NA NA NA NA LTS-021 chr1 59150809 60503727 1352919 * c(LINC01135, MIR4711, MYSM1, C1orf87, CYP2J2, JUN, HOOK1, FGGY, HSD52) 0.143114538906794 7 0.225790463335663 1.03913883234621 505 0.500804036795302 4 4 0 -6.82168216477061 LTS-021 chr1 60503728 61743160 1239433 * c(C1orf87, NFIA) 0.5 1 NA 0.905086067295922 61 0.505693629036482 3 3 0 -5.76828082111093 LTS-021 chr1 61743161 62594677 851517 * c(PATJ, MGC34796, NFIA, TM2D1) 0.403259519027665 11 0.140902867897776 1.12772975737442 467 0.545408162730731 4 2 2 -6.79736062992616 LTS-021 chr1 62594678 62627523 32846 * PATJ 0 1 NA 1.0246167105912 21 0.759520873408267 4 4 0 -5.76454835304524 LTS-021 chr1 62627524 63307220 679697 * c(PATJ, KANK4, ANGPTL3, L1TD1, USP1, ATG4C, DOCK7) 0.135531450951104 25 0.217132770442418 1.03859766035669 734 0.684828306847108 5 5 0 -6.81499202617392 LTS-021 chr1 63307221 63329703 22483 * ATG4C NA 0 NA 0.63 1 NA NA NA NA NA LTS-021 chr1 63329704 65298364 1968661 * c(MIR4794, UBE2U, LINC00466, ITGB3BP, FOXD3, ALG6, ROR1, PGM1, RAVER2, CACHD1, DLEU2L, EFCAB7, ATG4C) 0.117079638583824 12 0.207296650998398 0.921447945044555 911 0.468333216921832 3 3 0 -7.00462198771107 LTS-021 chr1 65298365 65299088 724 * c(JAK1, RAVER2) 0.452 1 NA 1.07353221276848 15 0.214828392200002 4 4 0 -5.76441284251913 LTS-021 chr1 65299089 65860687 561599 * c(MIR3671, AK4, JAK1, MIR101-1, DNAJC6) 0.313047192225121 9 0.191166884626438 0.931370371327446 346 0.519314612825318 3 2 1 -6.7612757288483 LTS-021 chr1 65860688 65879359 18672 * DNAJC6 0 1 NA 0.942041054618558 49 0.43516088587859 3 3 0 -5.76441086919864 LTS-021 chr1 65879360 66107147 227788 * c(LEPR, LEPROT, DNAJC6) 0.0794890366507701 11 0.200237858558266 0.946019972577822 403 0.581792011541415 7 7 0 -6.9335215760442 LTS-021 chr1 66107148 66829262 722115 * PDE4B 0.485 1 NA 0.802885388560188 103 0.295334406028101 2 2 0 -5.76677706255029 LTS-021 chr1 66829263 68941207 2111945 * c(INSL5, GNG12-AS1, MIR1262, MIR3117, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, C1orf141, PDE4B, DEPDC1, GNG12, MIER1, RPE65, WDR78, WLS, SGIP1, DIRAS3) 0.308694376373029 46 0.196223716354327 0.895070726694879 1696 0.517568126361644 3 2 1 -6.77634976790829 LTS-021 chr1 68941208 68941914 707 * DEPDC1 0 1 NA 0.39885588639696 19 0.457080821292014 0 0 0 -5.76447839274941 LTS-021 chr1 68941915 70728140 1786226 * c(PIN1P1, LRRC40, DEPDC1, LRRC7, ANKRD13C, SRSF11) 0.00611787354457195 11 0.0429077233988559 0.860147351950482 630 0.467384006070103 9 9 0 -11.9444109087744 LTS-021 chr1 70728141 70904487 176347 * c(HHLA3, CTH, ANKRD13C) NA 0 NA 1.00194160518828 140 0.547316660842108 3 NA NA -5.76590990408976 LTS-021 chr1 70904488 70904722 235 * CTH NA 0 NA 0.495 1 NA NA NA NA NA LTS-021 chr1 70904723 70904800 78 * CTH 0.444 1 NA 0.981 1 NA NA NA NA NA LTS-021 chr1 70904801 74672640 3767840 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, LRRIQ3, CTH, NEGR1, MIR186, PTGER3, FPGT, ZRANB2) 0.315158027798851 20 0.197905107511017 0.728190975940428 653 0.421598473464538 2 2 0 -6.80871979938777 LTS-021 chr1 74672641 74801749 129109 * c(FPGT-TNNI3K, TNNI3K, FPGT) 0 1 NA 0.736445511299349 77 0.506359790926764 2 2 0 -5.76566848837512 LTS-021 chr1 74801750 75171471 369722 * c(FPGT-TNNI3K, ERICH3, CRYZ, TNNI3K) 0.0267455242943219 10 0.131234522896988 0.681930892641257 482 0.375297216217148 5 5 0 -8.15868326661091 LTS-021 chr1 75171472 75175886 4415 * CRYZ 0.466 1 NA 0.525236769580321 25 0.220382833572248 0 0 0 -5.76486929383746 LTS-021 chr1 75175887 75699744 523858 * c(TYW3, CRYZ, SLC44A5, LHX8) 0.249261986746136 11 0.219044951800061 0.753834659689993 299 0.43541386441878 2 2 0 -6.76802413405619 LTS-021 chr1 75699745 76608691 908947 * c(ASB17, SLC44A5, ST6GALNAC3, SNORD45B, SNORD45A, ACADM, MSH4, RABGGTB, SNORD45C) 0.346844893144963 10 0.194914938712592 0.991121513311541 374 0.543675062531855 3 2 1 -6.73940858508304 LTS-021 chr1 76608692 76773496 164805 * ST6GALNAC3 0 1 NA 0.947150213445034 9 0.419076796197441 3 3 0 -5.76445505881768 LTS-021 chr1 76773497 78030158 1256662 * c(PIGK, ST6GALNAC3, AK5, ST6GALNAC5) 0.0200593053362137 17 0.110596245016568 0.799905768577486 540 0.609865249052884 6 6 0 -8.35558439801486 LTS-021 chr1 78030159 78046630 16472 * ZZZ3 0.475 1 NA 0.840449319662674 51 0.469653106861132 2 2 0 -5.76461461503388 LTS-021 chr1 78046631 79357360 1310730 * c(IFI44, IFI44L, DNAJB4, MGC27382, USP33, ZZZ3, MIGA1, GIPC2, PTGFR, ADGRL4, FUBP1, NEXN) 0.292476587584412 11 0.218733378589302 0.910540385118632 939 0.477617089261827 3 3 0 -6.75004257123937 LTS-021 chr1 79357361 79401957 44597 * ADGRL4 0 1 NA 0.786947781056117 35 0.40225343823444 2 2 0 -5.76441066032797 LTS-021 chr1 79401958 85412913 6010956 * c(MIR548AP, SSX2IP, SAMD13, CTBS, ADGRL2, LPAR3, MCOLN2, GNG5, UOX, LINC01555, PRKACB, DNASE2B, ADGRL4, TTLL7, RPF1) 0.127553538105646 16 0.19941380761288 0.892739881272287 1329 0.426311053925655 3 3 0 -7.0335983695931 LTS-021 chr1 85412914 85732065 319152 * c(MIR4423, WDR63, C1orf52, MCOLN2, MCOLN3, SYDE2, BCL10) 0.475 1 NA 0.852164657442367 396 0.359846052080687 2 2 0 -5.77419293338967 LTS-021 chr1 85732066 86047311 315246 * c(DDAH1, CYR61, LOC646626, BCL10) 0.402990265655756 11 0.139184834597086 1.181488386572 198 0.907207149783649 4 2 2 -6.79779259524292 LTS-021 chr1 86047312 86048924 1613 * CYR61 0 1 NA 0.928808833349886 33 0.393932153633931 3 3 0 -5.76441083788998 LTS-021 chr1 86048925 89301209 3252285 * c(LINC01364, CLCA1, CLCA4, COL24A1, LINC01140, CYR61, SH3GLB1, ZNHIT6, PKN2, ODF2L, LMO4, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.164490554060664 23 0.223787616353545 0.925237406771153 1468 0.541890907119943 3 3 0 -6.84012353010936 LTS-021 chr1 89301210 89426902 125693 * c(GTF2B, PKN2, KYAT3) 0.481 1 NA 0.847708869304558 99 0.389479884852876 2 2 0 -5.76729227220625 LTS-021 chr1 89426903 89655994 229092 * c(GBP4, GBP1, GBP2, GBP3, GBP7, RBMXL1, KYAT3) 0.432241804228091 15 0.074953001147068 0.87438523951412 508 0.477018584588876 2 1 1 -7.28370692946311 LTS-021 chr1 89655995 89735877 79883 * c(GBP4, GBP5) 0 1 NA 0.818227776216174 111 0.308353926753243 2 2 0 -5.765247562049 LTS-021 chr1 89735878 91980447 2244570 * c(GBP5, GBP6, HFM1, LRRC8B, ZNF326, BARHL2, GBP1P1, FLJ27354, GEMIN8P4, LRRC8D, LOC729930, CDC7, ZNF644, LRRC8C) 0.0500752229687586 9 0.159666666666667 0.857981496692424 1051 0.419100165687781 3 3 0 -7.67974236692819 LTS-021 chr1 91980448 92107937 127490 * CDC7 0.339 1 NA 0.970651322289674 55 0.297474770454973 3 3 0 -5.76537672524025 LTS-021 chr1 92107938 92763622 655685 * c(GLMN, KIAA1107, EPHX4, BTBD8, C1orf146, BRDT, TGFBR3) 0.257712910885953 9 0.241782156312477 0.819597967375226 584 0.418219808609259 2 2 0 -6.75548477811628 LTS-021 chr1 92763623 92764469 847 * GLMN NA 0 NA 1.284 1 NA NA NA NA NA LTS-021 chr1 92764470 94983383 2218914 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, DR1, MTF2, ABCA4, GFI1, SNORA66, GCLM, DNTTIP2, CCDC18, FAM69A, TMED5, FNBP1L, ABCD3, SNORD21, RPL5, EVI5, RPAP2, BCAR3, ARHGAP29) 0.194305054829994 43 0.222055481279644 1.01425738454934 2003 0.639302264103377 4 4 0 -6.76328540188117 LTS-021 chr1 94983384 95286085 302702 * c(SLC44A3, F3, ABCD3) 0.48 1 NA 1.2272098737148 79 0.732175397734526 5 5 0 -5.764481020576 LTS-021 chr1 95286086 95448454 162369 * c(CNN3, SLC44A3, ALG14, LOC729970) 0.350360038100049 9 0.14969886439115 1.03363397302356 181 0.475530454930707 4 2 2 -6.73570149314051 LTS-021 chr1 95448455 97189091 1740637 * c(TMEM56-RWDD3, TMEM56, ALG14, RWDD3, FLJ31662, PTBP2) 0.431766467410541 5 0.0389743505398101 0.787089945911454 235 0.34350465230306 2 1 1 -8.36981769025278 LTS-021 chr1 97189092 97236381 47290 * PTBP2 0 1 NA 1.24225003422831 23 0.282864218323748 5 5 0 -5.76441198423804 LTS-021 chr1 97236382 100591541 3355160 * c(LOC100129620, MIR2682, DPYD-AS1, PLPPR5, SASS6, AGL, DPYD, SLC35A3, FRRS1, MIR137HG, MIR137, SNX7, PALMD, PTBP2, MFSD14A, LOC729987, PLPPR4) 0.157280989525939 28 0.214527708154769 0.820586395098845 1208 0.469855370695942 2 2 0 -7.00523000958126 LTS-021 chr1 100591542 100598866 7325 * c(SASS6, TRMT13) 0.476 1 NA 0.883668133553368 14 0.287704757472878 3 3 0 -5.76460408547787 LTS-021 chr1 100598867 101005090 406224 * c(LRRC39, DBT, GPR88, TRMT13, MIR553, CDC14A, RTCA) 0.44101991432469 9 0.0445757781760453 0.929950650090903 468 0.586156953779626 4 2 2 -8.34599860714894 LTS-021 chr1 101005091 101006361 1271 * GPR88 0 1 NA 0.845697782679811 27 0.491896455066635 2 2 0 -5.76442727896917 LTS-021 chr1 101006362 108728564 7722203 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, OLFM3, COL11A1, SLC30A7, S1PR1, EXTL2, NTNG1, AMY2A, AMY2B, SLC25A24, DPH5, GPR88, PRMT6, RNPC3, ACTG1P4, VCAM1, DNAJA1P5) 0.164621548679477 26 0.222952192184782 0.795154168973954 1457 0.431430651769607 2 2 0 -6.95053872289251 LTS-021 chr1 108728565 108735088 6524 * SLC25A24 NA 0 NA 0.192 1 NA NA NA NA NA LTS-021 chr1 108735089 109103178 368090 * c(NBPF4, FAM102B, SLC25A24, NBPF6) 0.25 1 NA 0.507481246501058 59 0.600660448409952 0 0 0 -5.76642468293759 LTS-021 chr1 109103179 109103184 6 * FAM102B NA 0 NA 0.691 1 NA NA NA NA NA LTS-021 chr1 109103185 109255371 152187 * c(HENMT1, FAM102B, PRPF38B) 0.113082447116648 9 0.202332029100684 1.0368285096968 310 0.735908315942146 8 8 0 -6.79372822567629 LTS-021 chr1 109255372 109268573 13202 * FNDC7 0.427 1 NA 0.805059410670577 33 0.271584704823264 2 2 0 -5.76447478782791 LTS-021 chr1 109268574 109839896 571323 * c(C1orf194, FNDC7, CELSR2, WDR47, CLCC1, AKNAD1, GPSM2, MYBPHL, TMEM167B, KIAA1324, SARS, SPATA42, SCARNA2, STXBP3, TAF13, PSRC1) 0.338950611105887 23 0.193254649837448 0.994696170686956 1255 0.725203541031106 4 3 1 -6.73898087276173 LTS-021 chr1 109839897 109852212 12316 * c(MYBPHL, SORT1) 0 1 NA 1.51549754575523 18 0.649158210571923 7 7 0 -5.76441977529152 LTS-021 chr1 109852213 110199830 347618 * c(ATXN7L2, AMPD2, GNAI3, GNAT2, SYPL2, CYB561D1, GSTM2, GSTM4, MIR197, PSMA5, AMIGO1, SORT1, GPR61) 0.0395328398675502 11 0.145931490775638 0.983347826160309 1019 0.517231105266307 8 8 0 -7.28251904894877 LTS-021 chr1 110199831 110199999 169 * c(GSTM2, GSTM4) NA 0 NA 0.535 1 NA NA NA NA NA LTS-021 chr1 110200000 110277208 77209 * c(GSTM1, GSTM2, GSTM3, GSTM4, GSTM5) NA 0 NA 0.627377604749863 228 0.347824057959794 1 NA NA -5.76443413696764 LTS-021 chr1 110277209 110292943 15735 * c(GSTM3, EPS8L3) 0 3 0 0.868198694080893 101 0.569375846740521 0 0 0 -Inf LTS-021 chr1 110292944 110300441 7498 * EPS8L3 0.487 1 NA 1.04366486591352 47 0.295852350541616 4 4 0 -5.76451507598178 LTS-021 chr1 110300442 110925611 625170 * c(AHCYL1, CSF1, UBL4B, ALX3, KCNC4, SLC6A17, LOC440600, RBM15, EPS8L3, STRIP1, SLC16A4) 0.281722800433664 15 0.22357020842509 0.93429287846023 839 0.461349853096962 3 3 0 -6.73912356735331 LTS-021 chr1 110925612 111690641 765030 * c(LAMTOR5-AS1, CEPT1, LAMTOR5, DRAM2, KCNA2, KCNA3, KCNA10, LRIF1, CYMP, PROK1, SLC16A4, CD53) 0 4 0 0.674465592716836 481 0.391904463925102 0 0 0 -Inf LTS-021 chr1 111690642 111701963 11322 * CEPT1 NA 0 NA 0.985 1 NA NA NA NA NA LTS-021 chr1 111701964 111772602 70639 * c(CEPT1, CHI3L2, DENND2D) 0.449 1 NA 1.17962320954398 132 0.611197686575259 5 5 0 -5.76474111263972 LTS-021 chr1 111772603 111773371 769 * CHI3L2 NA 0 NA 0.358 1 NA NA NA NA NA LTS-021 chr1 111773372 111888990 115619 * c(CHI3L2, CHIAP2, CHIA) 0.254328655798112 3 0.251732662428485 0.570275738812982 135 0.350377593049902 2 2 0 -6.81022851385348 LTS-021 chr1 111888991 112042632 153642 * c(PIFO, C1orf162, ADORA3, PGCP1, OVGP1, ATP5F1, WDR77) 0.317277033996843 14 0.181387145915296 0.84154707102585 396 0.416075186741061 2 2 0 -6.74091260974152 LTS-021 chr1 112042633 112045863 3231 * ADORA3 0 1 NA 0.733051784641204 19 0.88437142246089 2 2 0 -5.76442198759712 LTS-021 chr1 112045864 113098542 1052679 * c(LINC01160, MIR4256, FAM212B-AS1, DDX20, ADORA3, KCND3, ST7L, CTTNBP2NL, FAM212B, RAP1A, LOC643355, WNT2B) 0.114503934561594 12 0.201333791139355 0.900253292990416 796 0.456850570532668 4 4 0 -7.02381464717509 LTS-021 chr1 113098543 113217311 118769 * c(MOV10, ST7L, CAPZA1) 0.356 1 NA 1.00163600435172 151 0.5972053705869 3 3 0 -5.7652506789998 LTS-021 chr1 113217312 113248365 31054 * c(RHOC, MOV10) 0.406173092744119 10 0.150063727203553 1.09617531208341 180 0.512428694862452 4 2 2 -6.79542141134213 LTS-021 chr1 113248366 113254760 6395 * c(PPM1J, RHOC) 0 1 NA 1.1487752043594 33 0.450709682393257 4 4 0 -5.76445881147387 LTS-021 chr1 113254761 114423432 1168672 * c(AP4B1-AS1, PHTF1, AKR7A2P1, MAGI3, PTPN22, FAM19A3, PPM1J, BCL2L15, RSBN1, LOC643441, SLC16A1, LRIG2) 0.0535526379898907 9 0.160666666666667 0.971692129988766 883 0.608216156656985 5 5 0 -7.31236642667225 LTS-021 chr1 114423433 114429340 5908 * c(AP4B1-AS1, BCL2L15) 0.376 1 NA 0.801091136418163 19 0.303627676738915 2 2 0 -5.76442489710829 LTS-021 chr1 114429341 115168822 739482 * c(AP4B1-AS1, BCAS2, AP4B1, SYT6, DENND2C, HIPK1, BCL2L15, TRIM33, OLFML3, DCLRE1B) 0.262163990355337 20 0.226933858901199 0.92325080732111 941 0.680099661115357 3 3 0 -6.73339350980868 LTS-021 chr1 115168823 115218231 49409 * c(DENND2C, AMPD1) 0 1 NA 0.62823875865014 29 0.594634913037366 1 1 0 -5.76441372681659 LTS-021 chr1 115218232 115399283 181052 * c(AMPD1, NRAS, SYCP1, CSDE1, SIKE1) 0.0381820984684591 9 0.151 0.921788911105701 343 0.481081718348968 9 9 0 -7.20560733411535 LTS-021 chr1 115399284 115399884 601 * SYCP1 0.449 1 NA 1.39524505780971 3 0.610085239946026 6 6 0 -5.76441013919328 LTS-021 chr1 115399885 116310967 911083 * c(TSPAN2, NGF, SYCP1, TSHB, VANGL1, CASQ2) 0.391175584392351 21 0.138606087958097 0.989649301182274 561 0.513290292278094 3 2 1 -6.78038345966995 LTS-021 chr1 116310968 116383197 72230 * c(NHLH2, CASQ2) 0 1 NA 0.835616754703985 102 0.415355978663895 2 2 0 -5.76536910384706 LTS-021 chr1 116383198 118319383 1936186 * c(MIR942, MIR320B1, MAN1A2, MAB21L3, IGSF3, ATP1A1, NHLH2, FAM46C, SLC22A15, PTGFRN, VTCN1, TRIM45, TTF2, ATP1A1-AS1, CD2, CD101, CD58) 0.166512591957627 39 0.197044858124642 0.952670517845697 1699 0.79233497422457 4 4 0 -6.82235420259344 LTS-021 chr1 118319384 118319409 26 * character(0) NA 0 NA 0.74 1 NA NA NA NA NA LTS-021 chr1 118319410 118320896 1487 * character(0) 0.221934368243607 2 0.306884343034962 0.372430999249793 38 0.309074643306654 4 4 0 -6.74394136398992 LTS-021 chr1 118320897 118320995 99 * character(0) NA 0 NA 0.979 1 NA NA NA NA NA LTS-021 chr1 118320996 119964731 1643736 * c(WARS2, WDR3, SPAG17, HSD3B2, HAO2, GDAP2, TBX15) 0.125072880085848 22 0.206097106520245 0.805348664570778 777 0.399571772519622 3 3 0 -7.11882289172001 LTS-021 chr1 119964732 120057158 92427 * c(HSD3B1, HSD3B2) 0.355 1 NA 0.599939388767756 49 0.28084774938271 1 1 0 -5.76635751235897 LTS-021 chr1 120057159 120455310 398152 * c(ADAM30, HSD3BP4, PHGDH, HMGCS2, HSD3B1, NBPF7, NOTCH2, LINC00622, REG4, ZNF697) 0.400092540125809 35 0.131749526811773 0.821673232002651 489 0.458980181060128 2 1 1 -6.79729636345059 LTS-021 chr1 120455311 120455441 131 * NOTCH2 0.438 1 NA 1.29122025947934 3 0.160702623915521 5 5 0 -5.76441413193284 LTS-021 chr1 120455442 120529742 74301 * NOTCH2 0.0988968215017623 8 0.200948465319558 0.9642942278242 277 0.443462209973721 8 8 0 -6.84343134149788 LTS-021 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.28 1 NA NA NA NA NA LTS-021 chr1 120534071 120536047 1977 * NOTCH2 0.211 1 NA 0.383794711373294 29 0.228185150818775 0 0 0 -5.76553186821507 LTS-021 chr1 120536048 120538700 2653 * NOTCH2 NA 0 NA 0.388889519015336 88 0.539608349012438 0 NA NA -5.76464834386699 LTS-021 chr1 120538701 120538706 6 * NOTCH2 NA 0 NA 0.53 1 NA NA NA NA NA LTS-021 chr1 120538707 120539331 625 * NOTCH2 0.436 1 NA 0.537774624492517 23 0.291951570243403 0 0 0 -5.76446858637096 LTS-021 chr1 120539332 120612194 72863 * NOTCH2 0.367183336479263 10 0.0965475703129464 0.888156858173677 50 0.433572642502419 2 1 1 -6.74252515346714 LTS-021 chr1 120612195 121313547 701353 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) NA 0 NA 0.63538750291604 110 0.432779440018915 1 NA NA -5.76446123483175 LTS-021 chr1 143912360 144013853 101494 * FAM72D 0.272 1 NA 0.707598445495905 5 0.403395959325326 2 2 0 -5.76849407538209 LTS-021 chr1 144013854 144900555 886702 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.404805440293836 15 0.0761215819468778 0.680562778888038 233 0.481505048274663 2 1 1 -7.00281943369674 LTS-021 chr1 144900556 144900651 96 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.928 1 NA NA NA NA NA LTS-021 chr1 144900652 145137236 236585 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.376306528597369 49 0.102676718409781 0.966421702957472 389 0.542780080419119 4 2 2 -6.76020055399801 LTS-021 chr1 145137237 145139113 1877 * NBPF20 NA 0 NA 0.349448524221677 48 0.309344221013531 0 NA NA -5.76558242969508 LTS-021 chr1 145139114 145282055 142942 * c(NBPF10, NBPF20, NOTCH2NL) 0.281081042665646 5 0.102787645171976 0.887604158969871 63 0.462254772451705 2 2 0 -6.75954264301485 LTS-021 chr1 145282056 145415705 133650 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) 0.333954564321598 12 0.0939756577121131 0.458173154489153 171 0.493287595012472 0 0 0 -6.77272684264498 LTS-021 chr1 145415706 145509393 93688 * c(NBPF10, NBPF20, TXNIP, LIX1L, HFE2, ANKRD34A, POLR3GL, RBM8A) 0.446 1 NA 1.13876704778796 329 0.463393012637403 4 4 0 -5.76487228539016 LTS-021 chr1 145509394 145511249 1856 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.574813298927115 49 0.296226956680086 1 NA NA -5.76452561884617 LTS-021 chr1 145511250 145511353 104 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 1.216 1 NA NA NA NA NA LTS-021 chr1 145511354 145746986 235633 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115, PDZK1, ITGA10, PEX11B, RBM8A) 0.282232163371734 21 0.212858873434959 1.16407114753698 799 0.620234663075444 5 4 1 -6.74329079893342 LTS-021 chr1 145746987 145747076 90 * c(NBPF10, NBPF20, PDZK1) NA 0 NA 0.626 1 NA NA NA NA NA LTS-021 chr1 145747077 146511357 764281 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.400138918004297 3 0.0515396287659635 0.583268898133327 134 0.321477254533441 0 0 0 -7.27615467986599 LTS-021 chr1 146511358 146514458 3101 * c(NA, NA, NA, LOC728989) NA 0 NA 0.932 1 NA NA NA NA NA LTS-021 chr1 146514459 147230775 716317 * c(LINC00624, PDIA3P1, FMO5, GJA5, ACP6, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.362607212193529 26 0.141283310571893 1.0221471363022 646 0.503950102614884 4 2 2 -6.74117206683189 LTS-021 chr1 147230776 149764234 2533459 * c(FCGR1CP, MIR5087, FCGR1A, NBPF14, GJA5, GJA8, NBPF15, LINC01138, LOC388692, HIST2H2BF, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.224 2 0.316783837971573 0.641327788811527 208 0.408643100827098 1 1 0 -6.81877185073292 LTS-021 chr1 149764235 149764249 15 * HIST2H2BF NA 0 NA 1.161 1 NA NA NA NA NA LTS-021 chr1 149764250 151108137 1343888 * c(MIR4257, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, RPRD2, CA14, CERS2, HIST2H2AB, HIST2H2BC, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, OTUD7B, PRUNE1, HIST2H3D, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, HORMAD1, ANXA9, PRPF3, SETDB1, SV2A) 0.29116758223944 62 0.187315582495947 1.21962084258313 3301 0.702209600560146 5 4 1 -6.73841586589761 LTS-021 chr1 151108138 151112483 4346 * SEMA6C 0.371 1 NA 1.42292868674771 49 0.692430140880652 6 6 0 -5.76441179607252 LTS-021 chr1 151112484 151313640 201157 * c(TNFAIP8L2-SCNM1, SEMA6C, TMOD4, LYSMD1, PI4KB, PSMD4, ZNF687, RFX5, VPS72, SCNM1, TNFAIP8L2, PIP5K1A) 0 9 0 1.07593993649702 659 0.5919964608073 0 0 0 -Inf LTS-021 chr1 151313641 151315287 1647 * RFX5 0.388 1 NA 0.925701610638768 35 0.349757738485158 3 3 0 -5.76441171094776 LTS-021 chr1 151315288 151778899 463612 * c(TDRKH, CELF3, POGZ, RIIAD1, LINGO4, OAZ3, PSMB4, CGN, RFX5, RORC, MRPL9, MIR554, TUFT1, SNX27, SELENBP1) 0.301779941547363 30 0.212862129574278 1.24050325872161 1129 0.641005742688107 5 4 1 -6.73350786518421 LTS-021 chr1 151778900 151779367 468 * RORC 0 1 NA 1.20863619484276 11 0.725705236931008 5 5 0 -5.7644106044514 LTS-021 chr1 151779368 152009532 230165 * c(LOC100132111, C2CD4D, THEM4, THEM5, RORC, S100A10, S100A11) 0 4 0 1.32361021995554 284 0.774081164787642 0 0 0 -Inf LTS-021 chr1 152009533 152056513 46981 * character(0) NA 0 NA 0.837 1 NA NA NA NA NA LTS-021 chr1 152056514 152322022 265509 * c(TCHHL1, RPTN, FLG, HRNR, FLG2, TCHH) 0.0504136031030776 8 0.120208152801713 0.719632331117678 492 0.351875114357144 6 6 0 -7.88024425376274 LTS-021 chr1 152322023 152323132 1110 * FLG2 0.478 1 NA 0.813604096384814 23 0.235206931010242 2 2 0 -5.76442494857206 LTS-021 chr1 152323133 152323221 89 * FLG2 NA 0 NA 0.454949941552763 2 0.0827314933988261 0 NA NA -5.76443090987929 LTS-021 chr1 152323222 152328907 5686 * FLG2 0.215813146770119 3 0.217345347316201 0.343310097801571 105 0.425189041559482 4 4 0 -6.75963150078515 LTS-021 chr1 152328908 153191287 862380 * c(C1orf68, LELP1, SPRR4, LCE4A, LCE5A, LCE2B, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, FLG2, SMCP, KPRP, LCE6A, CRNN, CRCT1, PRR9, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.363430422593905 26 0.167099196702023 0.671617052009026 657 0.424785751919243 1 1 0 -6.7520889922604 LTS-021 chr1 153191288 153234295 43008 * c(LOR, PRR9) 0.333 1 NA 1.11191712216417 31 0.643981312758993 4 4 0 -5.76443065050791 LTS-021 chr1 153234296 153274880 40585 * c(PGLYRP3, LOR) 0 1 NA 1.05860250476658 29 0.594424637987277 4 4 0 -5.76447626614328 LTS-021 chr1 153274881 153507281 232401 * c(PGLYRP3, S100A7A, PGLYRP4, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2) 0.222610019346522 4 0.274230286438242 0.867780688505112 271 0.505672007259438 3 3 0 -6.74708955348071 LTS-021 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.074 1 NA NA NA NA NA LTS-021 chr1 153507608 155583272 2075665 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, IL6R, ILF2, KCNN3, C1orf189, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, MSTO1, UBE2Q1, ASH1L, LENEP, SLC50A1, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, NA NA NA NA NA NA NA NA NA LTS-021 RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, ASH1L-AS1, POU5F1P4, SHC1, INTS3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.20047865008504 113 0.216438238081719 1.23945251422084 5847 0.7487333973378 5 5 0 -6.73307590716428 LTS-021 NA NA NA NA LTS-021 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.662 1 NA NA NA NA NA LTS-021 chr1 155583288 155642562 59275 * c(MSTO1, YY1AP1) 0.472 1 NA 0.598659351498614 116 0.315534252804119 1 1 0 -5.76548160807059 LTS-021 chr1 155642563 155644702 2140 * YY1AP1 NA 0 NA 1.41 1 NA NA NA NA NA LTS-021 chr1 155644703 155708463 63761 * c(YY1AP1, DAP3) 0.421530743608719 2 0.0190918830920368 1.14510283634444 123 0.628917380348811 7 4 3 -10.2585857663002 LTS-021 chr1 155708464 155716482 8019 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 0.163 1 NA NA NA NA NA LTS-021 chr1 155716483 155722401 5919 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.576011756586129 83 0.39432796978148 1 NA NA -5.764609070281 LTS-021 chr1 155722402 155722940 539 * c(GON4L, YY1AP1) NA 0 NA 0.804 1 NA NA NA NA NA LTS-021 chr1 155722941 156883546 1160606 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, TTC24, KIAA0907, SYT11, SMG5, LAMTOR2, HDGF, RXFP4, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, NTRK1, RRNAD1, GON4L, GPATCH4, YY1AP1, PRCC, UBQLN4, RAB25, RHBG, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, SSR2, SCARNA4, SNORA80E, CCT3, MRPL24, PAQR6, ISG20L2, TMEM79, SH2D2A, ARHGEF2, MEX3A, SLC25A44) 0.242234610472547 70 0.214782120329534 1.18258815662165 3460 0.660207799423918 4 4 0 -6.74640202034808 LTS-021 chr1 156883547 156909634 26088 * c(LRRC71, PEAR1, MIR765, ARHGEF11) 0 1 NA 1.08602168824782 179 0.504867652267349 4 4 0 -5.76441192942677 LTS-021 chr1 156909635 157105553 195919 * c(ETV3, CYCSP52, ETV3L, ARHGEF11) 0 7 0 1.22261197057571 366 0.581403665993817 0 0 0 -Inf LTS-021 chr1 157105554 157105983 430 * ETV3 NA 0 NA 0.191 1 NA NA NA NA NA LTS-021 chr1 157105984 158259712 1153729 * c(FCRL1, FCRL3, ETV3, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1C, CD1D, CD5L) 0.0857455491286525 29 0.185398917528365 1.00544452112323 1036 0.652185784026313 5 5 0 -7.02858671151142 LTS-021 chr1 158259713 158259796 84 * CD1C NA 0 NA 0.68 1 NA NA NA NA NA LTS-021 chr1 158259797 158368476 108680 * c(OR10T2, CD1B, CD1C, CD1E) 0 1 NA 0.755691535215138 141 0.392929994589914 2 2 0 -5.76504410274339 LTS-021 chr1 158368477 158390252 21776 * c(OR10T2, OR10K2) 0.446 1 NA 0.837019334421446 35 0.174676353784445 2 2 0 -5.76613449832634 LTS-021 chr1 158390253 159805391 1415139 * c(CADM3-AS1, OR10J5, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, AIM2) 0.244155766252137 47 0.207123225465638 0.777243259045208 1408 0.549088048708071 2 2 0 -6.77684622981164 LTS-021 chr1 159805392 160156027 350636 * c(LINC01133, CFAP45, C1orf204, KCNJ9, KCNJ10, VSIG8, ATP1A2, ATP1A4, SLAMF8, IGSF9, TAGLN2, SLAMF9, PIGM, IGSF8) 0.288012149024947 43 0.192744573602936 1.15470517161921 1079 0.597472256089344 5 4 1 -6.74264835539417 LTS-021 chr1 160156028 160168735 12708 * c(ATP1A4, CASQ1) 0 1 NA 1.34902386653861 55 0.919190101718705 6 6 0 -5.7644217358005 LTS-021 chr1 160168736 160849207 680472 * c(SLAMF6, COPA, NCSTN, LY9, SUMO1P3, NHLH1, DCAF8, CD244, ITLN1, VANGL2, SLAMF7, PEX19, SLAMF1, CASQ1, PEA15, CD84, CD48) 0.0948726648544648 43 0.184542668989426 1.12901942774641 1487 0.651180244623774 6 6 0 -6.90190014102169 LTS-021 chr1 160849208 160920809 71602 * c(ITLN2, ITLN1) 0.425 1 NA 0.970692060148229 49 0.468478032213536 3 3 0 -5.76462959405564 LTS-021 chr1 160920810 161070132 149323 * c(TSTD1, KLHDC9, ITLN2, ARHGAP30, F11R, USF1, NECTIN4) 0.315745597377057 21 0.194095460068101 1.20578033822618 508 0.681513639464666 5 4 1 -6.73425111168605 LTS-021 chr1 161070133 161070166 34 * KLHDC9 0 1 NA 3.487 1 NA NA NA NA NA LTS-021 chr1 161070167 161476490 406324 * c(MIR5187, FCER1G, FCGR2A, CFAP126, USP21, APOA2, MPZ, NDUFS2, NIT1, UFC1, PFDN2, PPOX, SDHC, PCP4L1, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.201112729122034 23 0.219884123274019 1.37625173967719 954 0.866770124906457 5 5 0 -6.73628559207608 LTS-021 chr1 161476491 161479565 3075 * FCGR2A NA 0 NA 0.729 1 NA NA NA NA NA LTS-021 chr1 161479566 161594429 114864 * c(FCGR2A, FCGR3A, FCGR3B, HSPA6, HSPA7, FCGR2C) 0.350575367567759 14 0.0947755300639416 0.626994178257161 353 0.374113540350076 1 1 0 -6.73657916611663 LTS-021 chr1 161594430 161595933 1504 * FCGR3B NA 0 NA 1.261 1 NA NA NA NA NA LTS-021 chr1 161595934 161967681 371748 * c(DUSP12, FCRLB, FCGR2B, FCGR3B, ATF6, OLFML2B, RPL31P11, FCRLA) 0.369333423539725 14 0.170916533835851 1.00219626257036 463 0.538825612521779 3 2 1 -6.74079229919149 LTS-021 chr1 161967682 161968066 385 * OLFML2B 0 1 NA 1.50397766160773 11 1.25420491293742 7 7 0 -5.76441027612374 LTS-021 chr1 161968067 167944197 5976131 * c(MIR921, MIR3658, LOC100505795, MIR4654, GPA33, FMO9P, TADA1, SH2D1B, UHMK1, FAM78B, ALDH9A1, MPC2, OLFML2B, C1orf111, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, RGS4, RXRG, UAP1, MIR556, UCK2, NUF2, RGS5, MAEL, CREG1, MPZL1, CD247, DUSP27, RCSD1, NOS1AP) 0.151171937712809 83 0.203780508010937 1.05998346887379 3417 0.605113161179548 4 4 0 -6.8225102887391 LTS-021 chr1 167944198 168014204 70007 * DCAF6 0.35 1 NA 1.1537471488528 67 0.492206084827487 4 4 0 -5.76493622739063 LTS-021 chr1 168014205 169292531 1278327 * c(LOC100505918, DPT, GPR161, TIPRL, NME7, SFT2D2, ATP1B1, DCAF6, XCL1, XCL2, MIR557, LINC00626, ANKRD36BP1, TBX19) 0.324423853399434 13 0.161043671414198 1.05993873523172 600 0.675916022184436 4 3 1 -6.7369571332316 LTS-021 chr1 169292532 169293567 1036 * NME7 NA 0 NA 0.405 1 NA NA NA NA NA LTS-021 chr1 169293568 169512120 218553 * c(SLC19A2, F5, NME7, CCDC181, BLZF1) 0.417713447883363 10 0.148156111360056 0.824672303911606 343 0.410125393639353 2 1 1 -6.83227966546011 LTS-021 chr1 169512121 169512194 74 * F5 0 1 NA 0.975524753841078 3 1.39950360247244 3 3 0 -5.76441016771335 LTS-021 chr1 169512195 171482622 1970428 * c(MIR1295A, MIR3119-1, MIR3119-2, MIR1295B, METTL11B, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, LINC01142, FMO6P, PRRX1, C1orf112, SCYL3, SELE, SELL, SELP, TOP1P1, MROH9, METTL18, GORAB) 0.118249054602326 20 0.191385282390756 0.87675365852633 1438 0.46499576741515 3 3 0 -7.06761927898391 LTS-021 chr1 171482623 171509327 26705 * PRRC2C 0.415 1 NA 1.13585297300737 75 0.442898059163518 4 4 0 -5.76453729362973 LTS-021 chr1 171509328 172502617 993290 * c(MIR3120, DNM3OS, PRRC2C, DNM3, MYOC, SUCO, METTL13, PIGC, VAMP4, C1orf105) 0.39594958069741 24 0.15693446892328 0.961395684706252 941 0.745405981730531 3 2 1 -6.77507627222231 LTS-021 chr1 172502618 172539836 37219 * SUCO 0 1 NA 0.967974557527114 37 0.380834026257575 3 3 0 -5.76455506243796 LTS-021 chr1 172539837 177899786 5359950 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, ASTN1, SERPINC1, SUCO, DARS2, MIR488, BRINP2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, SEC16B, TNFSF18, CENPL, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.057717933321481 50 0.16203593075964 0.916194648540609 2752 0.760560861866268 4 4 0 -7.48859295666665 LTS-021 chr1 177899787 178447287 547501 * c(RASAL2-AS1, LOC730102, SEC16B, RASAL2) 0.205671542659673 7 0.202188620093313 1.04054714406303 399 0.471096460707617 4 4 0 -6.74281982912532 LTS-021 chr1 178447288 178483231 35944 * c(TEX35, RASAL2) 0.45 1 NA 1.0770579292642 25 0.365996917109056 4 4 0 -5.7644403261457 LTS-021 chr1 178483232 178888856 405625 * c(MIR4424, C1orf220, RALGPS2, TEX35, ANGPTL1) 0.357775304013078 9 0.157599175124745 0.90857791955723 357 0.506766309027027 3 2 1 -6.73428832092503 LTS-021 chr1 178888857 179064968 176112 * c(RALGPS2, TOR3A, FAM20B) 0 1 NA 1.09707574683515 225 0.71182641418296 4 4 0 -5.76441478216302 LTS-021 chr1 179064969 179079727 14759 * c(ABL2, TOR3A) 0 10 0 1.10781339777651 222 0.731457465326868 0 0 0 -Inf LTS-021 chr1 179079728 179310439 230712 * c(ABL2, SOAT1) 0.487 1 NA 0.915033362531196 103 0.628111387642752 3 3 0 -5.76463943686586 LTS-021 chr1 179310440 179783922 473483 * c(AXDND1, FAM163A, TDRD5, SOAT1, NPHS2) 0.322972214455423 20 0.179065145452122 0.981799671538056 470 0.557170737447088 4 3 1 -6.74592724955804 LTS-021 chr1 179783923 179809366 25444 * c(FAM163A, TOR1AIP2) 0 1 NA 0.883714030079294 33 0.568222804279299 3 3 0 -5.76458256879735 LTS-021 chr1 179809367 180166843 357477 * c(TOR1AIP2, TOR1AIP1, QSOX1, CEP350) 0 12 0 1.01047638063375 692 0.753972915981133 0 0 0 -Inf LTS-021 chr1 180166844 180169330 2487 * c(FLJ23867, QSOX1) 0.439 1 NA 0.84485742074249 51 0.397925455626169 2 2 0 -5.76446004330798 LTS-021 chr1 180169331 181453165 1283835 * c(GM140, MIR3121, LHX4-AS1, STX6, FLJ23867, MR1, IER5, KIAA1614, CACNA1E, ACBD6, LHX4, XPR1) 0.286294096858623 30 0.210940338571791 1.04636418948122 1101 0.488227895925835 4 3 1 -6.77032954891763 LTS-021 chr1 181453166 182027183 574018 * c(ZNF648, CACNA1E) 0.084081276274638 8 0.197973618372319 0.778516032704747 556 0.392736124834578 3 3 0 -7.24663525014227 LTS-021 chr1 182027184 184677464 2650281 * c(ARPC5, TSEN15, ZNF648, TEDDM1, DHX9, NMNAT2, COLGALT2, RGL1, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, RGS16, RNASEL, EDEM3, NPL, C1orf21, SHCBP1L, RGS8, SMG7) 0.292603174076431 58 0.203812628207425 1.02640045153015 2497 0.503226338702161 4 3 1 -6.78246691113207 LTS-021 chr1 184677465 184706812 29348 * EDEM3 0 1 NA 1.04462025006662 63 0.617273371162683 4 4 0 -5.76450071853713 LTS-021 chr1 184706813 185276027 569215 * c(IVNS1ABP, FAM129A, SWT1, RNF2, EDEM3, TRMT1L) 0.148054157301228 3 0.261539671942901 0.971431154000327 597 0.567216226686316 4 4 0 -6.80099221605195 LTS-021 chr1 185276028 185986270 710243 * c(GS1-279B7.1, IVNS1ABP, HMCN1) 0 6 0 0.813997413959688 216 0.442373077292629 0 0 0 -Inf LTS-021 chr1 185986271 186057181 70911 * c(MIR548F1, HMCN1) 0.398 1 NA 0.842440468695883 136 0.286921829648732 2 2 0 -5.76693595082885 LTS-021 chr1 186057182 186316488 259307 * c(MIR548F1, RNU6-72P, PRG4, TPR, HMCN1) 0.394048311509596 11 0.143186591551025 0.812548463608618 516 0.354970352904659 2 1 1 -6.7732154160621 LTS-021 chr1 186316489 186329970 13482 * c(MIR548F1, TPR) 0 1 NA 0.96543096796412 61 0.424379453106037 3 3 0 -5.76444547013045 LTS-021 chr1 186329971 196195334 9865364 * c(MIR1278, MIR548F1, OCLM, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, CDC73, B3GALT2) 0.191679377479721 20 0.24091787200752 0.862103028544634 1142 0.471164706633134 3 3 0 -6.96721841806984 LTS-021 chr1 196195335 196715007 519673 * c(MIR4735, CFHR4, CFH, KCNT2) 0.0269205896584333 9 0.088 0.557041206801719 306 0.345920254911382 5 5 0 -9.79992130437701 LTS-021 chr1 196715008 196715023 16 * c(CFHR4, CFH) NA 0 NA 0.323 1 NA NA NA NA NA LTS-021 chr1 196715024 196888051 173028 * c(CFHR4, CFHR3, CFH, CFHR1) NA 0 NA 0.297610026646603 193 0.180818232080388 0 NA NA -6.41002092713373 LTS-021 chr1 196888052 196918544 30493 * CFHR2 NA 0 NA 0.503 1 NA NA NA NA NA LTS-021 chr1 196918545 200342331 3423787 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.12184268230054 44 0.168258878551524 0.573247834638791 1786 0.349154311758111 1 1 0 -7.78369692461287 LTS-021 chr1 200342332 200375879 33548 * c(ZNF281, LINC00862) NA 0 NA 1.949 1 NA NA NA NA NA LTS-021 chr1 200375880 204226125 3850246 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, KIF21B, CAMSAP2, FMOD, ZNF281, PHLDA3, TMEM9, LMOD1, OPTC, LINC00303, GPR25, UBE2T, RPS10P7, KISS1, LAD1, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PKP1, LAX1, ETNK2, PRELP, IPO9, C1orf106, PTPN7, RABIF, KLHL12, LGR6, REN, RNPEP, MGAT4EP, ASCL5, NA NA NA NA NA NA NA NA NA LTS-021 SNRPE, SNORA77, TNNI1, TNNT2, LINC01136, CACNA1S, BTG2, DDX59, LINC00260, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, SOX13, ZC3H11A, KIF14) 0.138067642088765 139 0.149161804691181 0.710057863118672 6296 0.448004790817912 2 2 0 -7.48411824125157 LTS-021 NA NA NA NA LTS-021 chr1 204226126 204226493 368 * PLEKHA6 NA 0 NA 1.225 1 NA NA NA NA NA LTS-021 chr1 204226494 204527240 300747 * c(LINC00628, PLEKHA6, MDM4, PIK3C2B, PPP1R15B) 0.244011015950657 5 0.189513324069839 0.894473958097043 604 0.513559447779868 3 3 0 -6.73850353153766 LTS-021 chr1 204527241 204527685 445 * MDM4 NA 0 NA 0.573 1 NA NA NA NA NA LTS-021 chr1 204527686 214814163 10286478 * c(MIR4260, MIR3122, LINC00538, LRRN2, CENPF, IL24, SLC26A9, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, MFSD4A, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELK4, NFASC, SRGAP2, SLC41A1, SYT14, DSTYK, INTS7, NSL1, RPS6KC1, DIEXF, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, TMEM81, LAMB3, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, ATF3, NEK2, G0S2, IL20, NA NA NA NA NA NA NA NA NA LTS-021 CDK18, DTL, PFKFB2, PIGR, PLXNA2, KLHDC8A, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, RBBP5, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, CNTN2, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, SLC30A1, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00467, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, LEMD1, CD34, IKBKE, TMCC2, LPGAT1) 0.139953677431765 181 0.156440399868019 0.69890363678488 8696 0.39376835779517 2 2 0 -7.80367412161827 LTS-021 NA NA NA NA LTS-021 chr1 214814164 218475668 3661505 * c(LINC00210, CENPF, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, USH2A) 0.117424240872935 33 0.150369947835733 0.565416967642052 1379 0.308127351195715 1 1 0 -8.12714142299447 LTS-021 chr1 218475669 219385649 909981 * c(LYPLAL1, RRP15, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.0769806226149877 4 0.1765 0.797192637262142 342 0.384180282577988 3 3 0 -7.4102645551148 LTS-021 chr1 219385650 220101749 716100 * c(LYPLAL1, RNU5F-1, SLC30A10) 0.217008333322999 2 0.31749094475276 0.451029262946453 113 0.388738450383512 0 0 0 -6.85949092445228 LTS-021 chr1 220101750 220101835 86 * c(RNU5F-1, SLC30A10) NA 0 NA 0.806 1 NA NA NA NA NA LTS-021 chr1 220101836 228468459 8366624 * c(NA, MIR320B2, MIR3620, MIR4742, MIR5008, BPNT1, LEFTY1, DUSP10, SNAP47, DNAH14, MRPL55, PARP1, BROX, CNIH3, SDE2, CCDC185, IBA57, EPHX1, EPRS, FBXO28, RAB3GAP2, RNU5F-1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, ITPKB, ARF1, MIA3, STUM, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, H3F3AP4, NVL, MARC2, SUSD4, SLC30A10, IARS2, ENAH, PSEN2, COQ8A, GJC2, C1orf145, NA NA NA NA NA NA NA NA NA LTS-021 ACBD3, MARC1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, WNT9A, C1orf35, C1orf115, HHIPL2, WDR26, CAPN2, MIXL1, OBSCN, CDC42BPA, DISP1, DEGS1, WNT3A, TAF1A, TMEM63A) 0.146335368533119 149 0.142394941399316 0.707174027545748 6910 0.396753573478181 2 2 0 -7.69518277345277 LTS-021 NA NA NA NA LTS-021 chr1 228468460 228469588 1129 * OBSCN NA 0 NA 0.55 1 NA NA NA NA NA LTS-021 chr1 228469589 228562138 92550 * OBSCN 0.156704446710927 20 0.138961514929778 0.545861518780201 555 0.342392989788353 5 5 0 -7.09840631120284 LTS-021 chr1 228562139 228562259 121 * OBSCN NA 0 NA 0.723 1 NA NA NA NA NA LTS-021 chr1 228562260 237632552 9070293 * c(LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, SPHAR, CAPN9, LYST, CCSAP, C1orf131, EDARADD, HIST3H2BB, SLC35F3, B3GALNT2, EXOC8, LOC149373, RNF187, AGT, COG2, RBM34, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GNG4, IRF2BP2, FAM89A, KCNK1, COA6, LGALS8, TRIM67, MTR, NID1, TRIM17, ARID4B, EGLN1, MAP10, HEATR1, NUP133, ERO1B, DUSP5P1, NA NA NA NA NA NA NA NA NA LTS-021 SIPA1L2, ACTA1, RHOU, RAB4A, RYR2, SNRPD2P2, MT1HL1, ARV1, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, ACTN2, HIST3H2A, GGPS1, TOMM20, URB2) 0.159054209178967 146 0.150975647383861 0.681312234647182 6859 0.396247023609077 1 1 0 -7.70205853804073 LTS-021 NA NA NA NA LTS-021 chr1 237632553 237634338 1786 * RYR2 NA 0 NA 0.858 1 NA NA NA NA NA LTS-021 chr1 237634339 241757549 4123211 * c(LOC100130331, MIR3123, CHRM3, FH, OPN3, LINC01139, FMN2, ZP4, RGS7, RYR2, GREM2, RPS7P5, KMO) 0.152971601471816 16 0.134479986119373 0.79378292317818 1284 0.405881362439536 2 2 0 -7.37873812551556 LTS-021 chr1 241757550 241757567 18 * c(OPN3, KMO) 0 1 NA 1.831 1 NA NA NA NA NA LTS-021 chr1 241757568 242612612 855045 * c(CHML, WDR64, PLD5, OPN3, MAP1LC3C, KMO, EXO1) 0.0471451225609872 11 0.105975297293113 0.859502801533893 513 0.509990314310164 6 6 0 -7.98755146643837 LTS-021 chr1 242612613 242612618 6 * PLD5 NA 0 NA 0.38 1 NA NA NA NA NA LTS-021 chr1 242612619 243419568 806950 * c(SDCCAG8, PLD5, LINC01347, CEP170) 0.104727038587846 6 0.126771842299463 0.563609461096526 227 0.378614180598898 2 2 0 -8.25028972727581 LTS-021 chr1 243419569 243433381 13813 * SDCCAG8 NA 0 NA 1.247 1 NA NA NA NA NA LTS-021 chr1 243433382 246943707 3510326 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, NA, HNRNPU, LOC339529, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, EFCAB2) 0.0610494403263786 34 0.104357041721499 0.979080314348063 1727 0.522297965853546 4 4 0 -8.04523206618014 LTS-021 chr1 246943708 246943710 3 * LINC01341 NA 0 NA 0.567 1 NA NA NA NA NA LTS-021 chr1 246943711 247003925 60215 * c(LINC01341, AHCTF1) NA 0 NA 0.410101014520718 46 0.162612874213278 0 NA NA -5.79734180968264 LTS-021 chr1 247003926 247150168 146243 * c(ZNF670-ZNF695, AHCTF1, ZNF695) 0.139916609496286 6 0.14063522555415 1.15659207768337 282 0.612700250855053 7 7 0 -6.76964472836799 LTS-021 chr1 247150169 247150269 101 * c(ZNF670-ZNF695, ZNF695) NA 0 NA 0.598 1 NA NA NA NA NA LTS-021 chr1 247150270 247740767 590498 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2C3, ZNF496, ZNF670) 0.0909283978417448 14 0.115066273306939 0.841603728774345 708 0.568881511940592 6 6 0 -7.34255379247819 LTS-021 chr1 247740768 247769647 28880 * c(OR2G3, OR2G2) 0 2 0 0.54836597570747 50 0.454217506559695 0 0 0 -Inf LTS-021 chr1 247769648 247875415 105768 * c(OR6F1, OR13G1, OR2G3) 0.242 1 NA 0.525038944415864 39 0.168791429162456 0 0 0 -5.78295625292205 LTS-021 chr1 247875416 248685836 810421 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR2L5) 0.224634286564507 40 0.143772041788381 0.562763976799054 749 0.733213711488954 2 2 0 -6.99301952984322 LTS-021 chr1 248685837 248814178 128342 * c(OR2T34, OR2T10, OR2T11, OR2T29, OR2G6, OR2T27, OR2T35) 0.233962803628743 5 0.115283563442496 0.146133484822568 132 0.23765274535932 0 0 0 -8.84363604850963 LTS-021 chr1 248814179 248844595 30417 * OR2T27 NA 0 NA 0.59 1 NA NA NA NA NA LTS-021 chr1 248844596 249111122 266527 * c(OR14I1, LYPD8, SH3BP5L) 0.192948169510765 5 0.138886644426309 0.866733090014793 101 0.529497457617846 4 4 0 -6.79809738187845 LTS-021 chr1 249111123 249214134 103012 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 0.845608811777205 239 0.462116965040249 2 NA NA -5.76598082929169 LTS-021 chr2 38824 40569 1746 * FAM110C 0.432 1 NA 1.78511155604233 33 0.658103192896069 9 9 0 -5.7644139872763 LTS-021 chr2 40570 7182177 7141608 * c(LINC01304, RNASEH1-AS1, CMPK2, TMEM18, LINC01105, MYT1L, RNASEH1, SH3YL1, FAM150B, LINC01115, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, ACP1, SNTG2, ADI1, ALLC, RPS7, FAM110C, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, RSAD2, RNF144A) 0.271695009930255 55 0.213353681163446 1.39001114843092 2131 0.777761177881678 6 5 1 -6.73446561944698 LTS-021 chr2 7182178 8178737 996560 * c(LOC100506274, LINC00298, LINC00299, RNF144A) 0 1 NA 1.450138705115 93 1.01877954386586 6 6 0 -5.76517426958994 LTS-021 chr2 8178738 9467973 1289236 * c(MBOAT2, LINC00299, ID2, KIDINS220, ASAP2) 0.0811121982639043 10 0.172459850400028 1.29753879817458 506 0.682104012637858 7 7 0 -6.91888132297836 LTS-021 chr2 9467974 9496291 28318 * ASAP2 0.491 1 NA 1.77171247526559 27 0.571834462429165 8 8 0 -5.76448753283725 LTS-021 chr2 9496292 10784512 1288221 * c(SNORA80B, MIR4261, YWHAQ, CYS1, IAH1, GRHL1, HPCAL1, C2orf48, ODC1, CPSF3, RRM2, ADAM17, NOL10, KLF11, ASAP2, TAF1B, ITGB1BP1) 0.275810465667813 24 0.225389260703743 1.51108321983021 1278 0.683562093618584 7 6 1 -6.73816950413342 LTS-021 chr2 10784513 10912719 128207 * c(ATP6V1C2, NOL10) 0.452 1 NA 1.64151637455646 95 0.774629131072081 8 8 0 -5.76459262583952 LTS-021 chr2 10912720 10960952 48233 * c(PDIA6, ATP6V1C2) 0.461848749564276 11 0.0324667662247244 1.30176670259664 137 0.545707320756289 7 4 3 -10.0857990004822 LTS-021 chr2 10960953 10977575 16623 * PDIA6 0 1 NA 1.06162580524205 7 1.18878753758769 4 4 0 -5.76441571728328 LTS-021 chr2 10977576 11427823 450248 * c(PDIA6, C2orf50, PQLC3, FLJ33534, KCNF1, ROCK2) 0.0540224113153718 9 0.147666666666667 1.50137671526332 439 0.981131614564705 13 13 0 -6.874020220031 LTS-021 chr2 11427824 11725241 297418 * c(MIR4429, LINC00570, E2F6, ROCK2, GREB1) 0.463 1 NA 1.64404936467185 131 0.639943338837961 8 8 0 -5.76498073817116 LTS-021 chr2 11725242 17947886 6222645 * c(MIR3125, MIR4262, LOC100506474, MYCNOS, FAM84A, DDX1, LPIN1, NTSR2, TRIB2, GEN1, MYCN, NBAS, RAD51AP2, VSNL1, SMC6, FAM49A, GREB1) 0.282740819975823 49 0.208629556071681 1.43252416415733 1693 0.648811252276586 6 5 1 -6.73825318195352 LTS-021 chr2 17947887 17965427 17541 * c(GEN1, SMC6) 0 1 NA 1.34814241667687 103 0.595694699445655 6 6 0 -5.76444966581524 LTS-021 chr2 17965428 20526147 2560720 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, PUM2, MSGN1, GEN1, KCNS3, LINC00954, MATN3, WDR35, RDH14, SDC1, SMC6, NT5C1B, LAPTM4A) 0.21147183953301 23 0.231180806334331 1.33805728909794 918 0.758242896276918 5 5 0 -6.74816719016666 LTS-021 chr2 20526148 20817777 291630 * c(PUM2, RHOB, HS1BP3) 0.453 1 NA 1.42199539143539 79 0.591510428329425 6 6 0 -5.76455168397005 LTS-021 chr2 20817778 20838318 20541 * HS1BP3 0.446398598005961 11 0.0380559396869207 1.51186687834038 161 0.677849358367884 9 5 4 -8.93084644305365 LTS-021 chr2 20838319 20839859 1541 * HS1BP3 0 1 NA 1.69687987491154 7 0.936619580243355 8 8 0 -5.76441015654968 LTS-021 chr2 20839860 20884398 44539 * c(GDF7, HS1BP3) 0.335052717161265 6 0.177170445240358 1.57949946466289 138 0.899981111059819 7 5 2 -6.73341441899943 LTS-021 chr2 20884399 21363232 478834 * c(APOB, LDAH) 0.0923867532415376 4 0.238 0.966486066849446 540 0.524750059036561 5 5 0 -6.9209128940041 LTS-021 chr2 21363233 21365377 2145 * character(0) 0 3 0 1.327844055004 47 0.72121907536587 0 0 0 -Inf LTS-021 chr2 21365378 23860176 2494799 * c(KLHL29, LOC645949) 0.444 1 NA 1.39557251569174 55 0.768911122613085 6 6 0 -5.76441958801657 LTS-021 chr2 23860177 24256071 395895 * c(KLHL29, UBXN2A, MFSD2B, ATAD2B, WDCP) 0.335746522563804 19 0.193971783080888 1.60550921958791 611 1.23315614133905 7 5 2 -6.73363061152532 LTS-021 chr2 24256072 24261759 5688 * WDCP 0 1 NA 1.1113077427049 27 1.00967238911111 4 4 0 -5.76441117264386 LTS-021 chr2 24261760 25656889 1395130 * c(MIR1301, ADCY3, DNMT3A, DTNB, FKBP1B, EFR3B, PFN4, FAM228B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3) 0.207808655635435 30 0.215745808819056 1.44713843512626 1565 0.772552928368278 6 6 0 -6.74460826825321 LTS-021 chr2 25656890 25674334 17445 * DTNB NA 0 NA 0.827 1 NA NA NA NA NA LTS-021 chr2 25674335 27163011 1488677 * c(CENPA, RAB10, CIB4, GAREM2, ADGRF3, DTNB, HADHA, HADHB, C2orf70, KCNK3, KIF3C, SLC35F6, ASXL2, DPYSL5, SELENOI, DRC1, OTOF) 0.150277980184832 54 0.193661404757176 1.29656129572795 1942 0.716767109563047 6 6 0 -6.757065724104 LTS-021 chr2 27163012 27169842 6831 * DPYSL5 0.357 1 NA 1.40137081680355 27 0.623183658157747 6 6 0 -5.76441018636964 LTS-021 chr2 27169843 27463351 293509 * c(OST4, PREB, CGREF1, EMILIN1, TCF23, MAPRE3, PRR30, KHK, ATRAID, TMEM214, DPYSL5, AGBL5, CAD, ABHD1, SLC5A6) 0.322485513967704 28 0.131080506584119 1.27331379121435 1140 0.585036315739808 5 4 1 -6.7408806297963 LTS-021 chr2 27463352 27465330 1979 * CAD 0 1 NA 1.03015683405149 27 0.603460937065609 4 4 0 -5.76442117972647 LTS-021 chr2 27465331 27720568 255238 * c(GTF3C2-AS1, ZNF513, KRTCAP3, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, MPV17, PPM1G, TRIM54, FNDC4, UCN, SLC30A3, CAD, EIF2B4, SNX17) 0.0927671302626146 18 0.196270263514036 1.30413761004923 1201 0.660478086681458 8 8 0 -6.80770860753329 LTS-021 chr2 27720569 27721054 486 * GCKR NA 0 NA 0.256 1 NA NA NA NA NA LTS-021 chr2 27721055 27800805 79751 * c(GCKR, C2orf16) 0.084674433501536 7 0.173082281561332 1.07324724214758 153 1.17532205786945 14 14 0 -6.76516746489734 LTS-021 chr2 27800806 27801493 688 * C2orf16 0.372 1 NA 0.723217140229056 15 0.577472555521864 2 2 0 -5.76441858227935 LTS-021 chr2 27801494 29286193 1484700 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, SPDYA, SNORD53, C2orf71, PPP1CB, TRMT61B, RBKS, SNORD92, CCDC121, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.30434226327737 46 0.133491654192801 1.20955933755912 1846 0.565509947726844 5 4 1 -6.73575030957055 LTS-021 chr2 29286194 29286639 446 * C2orf71 0 1 NA 1.20371744361171 11 0.592721995235847 5 5 0 -5.76441100256042 LTS-021 chr2 29286640 29449927 163288 * c(ALK, C2orf71, CLIP4) 0.0765316169581863 14 0.170612809510982 1.08248192702748 350 0.776922324557234 11 11 0 -6.84762346438941 LTS-021 chr2 29449928 29940529 490602 * ALK 0.295 1 NA 1.15925721886533 91 0.604132715529575 4 4 0 -5.76729791329625 LTS-021 chr2 29940530 30864006 923477 * c(ALK, LCLAT1, YPEL5, LBH) 0.346941881552494 16 0.145426040767578 1.14244419133477 264 0.7768758727206 4 2 2 -6.7380871661462 LTS-021 chr2 30864007 30864139 133 * LCLAT1 0 1 NA 1.51229328918568 5 1.1136475205378 7 7 0 -5.76441017638796 LTS-021 chr2 30864140 33759395 2895256 * c(LOC100271832, MIR4765, LCLAT1, RASGRP3, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.167650580354296 40 0.19367858485328 1.2070211884936 2209 0.657954929053478 5 5 0 -6.75427637785153 LTS-021 chr2 33759396 33787773 28378 * RASGRP3 0.425 1 NA 1.40456882389913 48 0.513411217265638 6 6 0 -5.76441143878605 LTS-021 chr2 33787774 36810473 3022700 * c(LOC100288911, MYADML, RASGRP3, FAM98A, CRIM1, FEZ2) 0.353083686875847 12 0.0873524296725453 1.11597096889602 444 0.598428147004708 4 2 2 -6.73698906409939 LTS-021 chr2 36810474 36986579 176106 * c(VIT, FEZ2) 0 1 NA 1.01255140708669 47 0.8462382396151 4 4 0 -5.76525006437999 LTS-021 chr2 36986580 37499506 512927 * c(CEBPZOS, CEBPZ, PRKD3, GPATCH11, SULT6B1, VIT, HEATR5B, NDUFAF7, EIF2AK2, STRN) 0.0400119247262166 9 0.147 1.1911025100084 1125 0.602643782558475 9 9 0 -7.1504564079004 LTS-021 chr2 37499507 37595525 96019 * c(PRKD3, QPCT) 0.387 1 NA 1.17484398625133 101 0.421479575395116 5 5 0 -5.76550362793845 LTS-021 chr2 37595526 39998640 2403115 * c(ARHGEF33, RMDN2-AS1, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, QPCT, CYP1B1-AS1, CDKL4, LOC375196, ATL2, SRSF7, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.197321946704793 20 0.190299065185634 1.16199970013968 1756 0.679641199831362 5 5 0 -6.74806753513822 LTS-021 chr2 39998641 40405721 407081 * c(SLC8A1-AS1, SLC8A1, THUMPD2) NA 0 NA 1.27550653416377 142 0.42415880167934 5 NA NA -5.76520085331305 LTS-021 chr2 40405722 42163538 1757817 * c(SLC8A1-AS1, LOC388942, C2orf91, SLC8A1) 0.411 1 NA 0.865434560586959 61 0.293669653818318 3 3 0 -5.84416030238337 LTS-021 chr2 42163539 43994026 1830488 * c(LINC01126, PLEKHH2, OXER1, KCNG3, HAAO, EML4, C2orf91, MTA3, THADA, ZFP36L2, C1GALT1C1L, PKDCC, COX7A2L) 0.355349723041476 47 0.182053064307819 0.957709861435928 1368 0.499687282487278 3 2 1 -6.73480327812998 LTS-021 chr2 43994027 44036895 42869 * c(PLEKHH2, DYNC2LI1) 0 1 NA 0.995573802437821 137 0.408711182262799 3 3 0 -5.76494234164874 LTS-021 chr2 44036896 44460322 423427 * c(LRPPRC, DYNC2LI1, PPM1B, ABCG5, ABCG8) 0.070959582977299 17 0.182067214479256 0.854649295362062 511 0.524468056514973 5 5 0 -7.15104021666991 LTS-021 chr2 44460323 44502788 42466 * c(PPM1B, SLC3A1) 0.452 1 NA 1.24409056998517 41 3.44234508162323 5 5 0 -5.76441013603892 LTS-021 chr2 44502789 47201797 2699009 * c(LINC01119, MIR548AD, SIX2, EPAS1, RHOQ, TMEM247, LINC01118, LINC01121, PIGF, SRBD1, PRKCE, TTC7A, SIX3, SLC3A1, CAMKMT, MCFD2, ATP6V1E2, CRIPT, PREPL, SOCS5) 0.347345653843302 37 0.18253795113237 0.931695225862565 1337 0.573709185158168 3 2 1 -6.73424641300052 LTS-021 chr2 47201798 47278954 77157 * TTC7A 0 1 NA 1.12023796990156 83 0.550534762066225 4 4 0 -5.76451033959025 LTS-021 chr2 47278955 48605853 1326899 * c(C2orf61, MSH6, FOXN2, EPCAM, MSH2, KCNK12, TTC7A, MIR559, FBXO11, CALM2) 0.145205701656511 12 0.222175657368832 0.99192825003261 786 0.750231405747997 4 4 0 -6.82530524659355 LTS-021 chr2 48605854 48667927 62074 * c(PPP1R21, FOXN2) 0.462 1 NA 1.09596447803282 13 0.518812932543474 4 4 0 -5.76441203642767 LTS-021 chr2 48667928 48873662 205735 * c(GTF2A1L, STON1, PPP1R21, STON1-GTF2A1L) 0.391777587705638 6 0.0734738048558804 0.962729702818481 290 0.474055113440083 4 2 2 -6.86933320161749 LTS-021 chr2 48873663 48873721 59 * c(GTF2A1L, STON1-GTF2A1L) NA 0 NA 0.645 1 NA NA NA NA NA LTS-021 chr2 48873722 49189921 316200 * c(GTF2A1L, FSHR, STON1-GTF2A1L, LHCGR) 0.402682510716509 9 0.155207925055391 0.663096178949209 200 0.414277471620727 2 1 1 -6.81496119030261 LTS-021 chr2 49189922 49190388 467 * FSHR 0 1 NA 0.658936461987011 11 0.62215300661201 1 1 0 -5.76441135847218 LTS-021 chr2 49190389 51253601 2063213 * c(FSHR, NRXN1) 0.0739996162201268 12 0.188381684595157 0.782348252233398 443 0.470210362270955 3 3 0 -7.44387007367086 LTS-021 chr2 51253602 51254635 1034 * NRXN1 NA 0 NA 1.557 1 NA NA NA NA NA LTS-021 chr2 51254636 54087099 2832464 * c(MIR3682, GPR75, ERLEC1, CHAC2, ASB3, NRXN1) 0.232698422649721 7 0.233510171084687 0.935492679641245 287 0.54283557157002 3 3 0 -6.74084791528317 LTS-021 chr2 54087100 54115904 28805 * c(GPR75, PSME4, ASB3) 0.4 1 NA 0.969707933641125 43 0.707634519727889 3 3 0 -5.76444652130742 LTS-021 chr2 54115905 54886347 770443 * c(C2orf73, PSME4, TSPYL6, RPL23AP32, SPTBN1, ACYP2) 0.444576334850873 11 0.0317879336741589 0.980810074042709 581 0.57981165951371 4 2 2 -9.49734298581564 LTS-021 chr2 54886348 54888253 1906 * SPTBN1 0 1 NA 1.04603586538747 29 0.483300231016387 4 4 0 -5.76441914883576 LTS-021 chr2 54888254 61147617 6259364 * c(MIR216B, MIR4432, CFAP36, CCDC85A, CLHC1, EFEMP1, PRORSD1P, EML6, LINC01122, LINC01185, MIR216A, MIR217, MTIF2, BCL11A, FANCL, CCDC88A, RTN4, PPP4R3B, REL, RPS27A, PAPOLG, SPTBN1, VRK2, PNPT1) 0.16784848536596 28 0.222017254680039 0.992078904015776 2057 0.58015396707215 3 3 0 -6.86694587941163 LTS-021 chr2 61147618 61180288 32671 * c(PUS10, REL) 0.435 1 NA 0.903281047010089 48 0.494368348329247 3 3 0 -5.76452896242143 LTS-021 chr2 61180289 62738931 1558643 * c(SNORA70B, MIR5192, CCT4, B3GNT2, AHSA2, COMMD1, PUS10, TMEM17, LOC339803, C2orf74, PEX13, XPO1, FAM161A, KIAA1841, USP34) 0.322453947093456 27 0.191358064454856 1.01365082045784 1257 0.602660297424164 4 3 1 -6.74969586618255 LTS-021 chr2 62738932 63206277 467346 * c(TMEM17, EHBP1) 0 1 NA 0.76412941306676 103 0.681743042260825 2 2 0 -5.76487107695212 LTS-021 chr2 63206278 64174548 968271 * c(LOC100132215, DBIL5P2, EHBP1, MDH1, OTX1, WDPCP, VPS54, UGP2) 0.152389458713141 9 0.212121427489068 0.936112752672369 517 0.793879013410901 4 4 0 -6.82714197303779 LTS-021 chr2 64174549 64327544 152996 * c(VPS54, PELI1) 0.389 1 NA 0.908200588080496 123 0.420620725850887 3 3 0 -5.76497716801953 LTS-021 chr2 64327545 66794834 2467290 * c(MIR4434, MIR4778, ACTR2, LINC00309, SPRED2, CEP68, LGALSL, LOC339807, LOC400958, MEIS1, AFTPH, PELI1, RAB1A, SLC1A4, MEIS1-AS3, SERTAD2) 0.390119621510718 25 0.155313317737619 0.95059628858326 942 0.459555299613617 3 2 1 -6.76541458926352 LTS-021 chr2 66794835 67631971 837137 * c(MEIS1, ETAA1, LOC644838) 0 1 NA 1.00968794096839 103 0.428595449572941 3 3 0 -5.77889512050945 LTS-021 chr2 67631972 69015028 1383057 * c(C1D, PROKR1, WDR92, APLF, CNRIP1, PLEK, ETAA1, PPP3R1, FBXO48, PNO1, ARHGAP25) 0.170204121042225 15 0.21280268079228 0.895529138230082 736 0.716235347242358 4 4 0 -6.83764293218791 LTS-021 chr2 69015029 69172588 157560 * c(GKN2, BMP10, ARHGAP25) 0.491 1 NA 0.822651886287382 125 0.348113070803893 2 2 0 -5.76607146288822 LTS-021 chr2 69172589 69693006 520418 * c(MIR3126, GKN2, AAK1, GFPT1, NFU1, GKN1, ANTXR1) 0.436624961162733 12 0.0512896557590201 0.935719752952497 512 0.466932468257464 4 2 2 -7.93421798834246 LTS-021 chr2 69693007 69693242 236 * AAK1 0 1 NA 1.05360319407475 5 1.15234096516613 4 4 0 -5.76441027006868 LTS-021 chr2 69693243 71043873 1350631 * c(SNORA36C, LOC100133985, SNRNP27, ADD2, ASPRV1, CLEC4F, AAK1, ANXA4, FIGLA, PCBP1-AS1, MXD1, PCBP1, PCYOX1, C2orf42, GMCL1, SNRPG, TGFA, TIA1, FAM136A) 0.11183855474049 16 0.217182872252855 0.953501711119111 1520 0.943483311920647 5 5 0 -6.89586813620438 LTS-021 chr2 71043874 71058226 14353 * c(CLEC4F, CD207) 0.389 1 NA 0.876225724852968 45 0.295927137496835 3 3 0 -5.7648769192568 LTS-021 chr2 71058227 71186244 128018 * c(VAX2, CD207, ATP6V1B1) 0.246846757350064 12 0.241223192889653 1.09396168108495 102 0.960422095504723 3 3 0 -6.73656605457671 LTS-021 chr2 71186245 71187104 860 * ATP6V1B1 0.478 1 NA 0.819311679261776 3 0.156946912468303 2 2 0 -5.76444719448715 LTS-021 chr2 71187105 71376999 189895 * c(MPHOSPH10, TEX261, ATP6V1B1, NAGK, OR7E91P, ANKRD53, MCEE) 0.428368072834584 10 0.149810102018077 0.942399894429879 378 0.602308043947911 4 2 2 -6.87107293684864 LTS-021 chr2 71377000 71412287 35288 * c(MPHOSPH10, PAIP2B) 0 1 NA 0.61486757931122 55 0.397093393250206 1 1 0 -5.76451584520914 LTS-021 chr2 71412288 71891541 479254 * c(ZNF638, PAIP2B, DYSF) 0.0476460941594441 9 0.150666666666667 0.931951247341795 591 0.475486850531679 6 6 0 -7.36621296812231 LTS-021 chr2 71891542 71894544 3003 * DYSF 0 1 NA 1.6368490040003 7 1.02155434790044 8 8 0 -5.76441297659622 LTS-021 chr2 71894545 72690622 796078 * c(EXOC6B, CYP26B1, DYSF) 0.291602214256461 9 0.2325763315559 0.890023672465835 292 0.456289511131115 3 3 0 -6.75111956245092 LTS-021 chr2 72690623 72719413 28791 * EXOC6B 0 1 NA 0.908949810710866 47 0.388247315249359 3 3 0 -5.76452921220046 LTS-021 chr2 72719414 73316060 596647 * c(EMX1, EXOC6B, RAB11FIP5, SPR, SFXN5) 0.0682216083786631 9 0.161894341401353 0.946480290831936 419 0.641769523902258 6 6 0 -7.13594041970838 LTS-021 chr2 73316061 73429742 113682 * c(RAB11FIP5, NOTO) 0.482 1 NA 0.898441800237907 37 0.40808366148962 3 3 0 -5.76519805916038 LTS-021 chr2 73429743 73675263 245521 * c(SMYD5, CCT7, FBXO41, EGR4, NOTO, ALMS1, PRADC1) 0.252339382541691 22 0.232046686040039 0.972619320874642 589 0.525131189338839 3 3 0 -6.73423427901887 LTS-021 chr2 73675264 73762168 86905 * ALMS1 0.264973482651203 8 0.238993686407941 0.565920575525285 189 0.444248764694983 2 2 0 -6.77426055539871 LTS-021 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 0.835 1 NA NA NA NA NA LTS-021 chr2 73777367 74092805 315439 * c(STAMBP, ALMS1P1, C2orf78, TPRKB, ALMS1, DUSP11, NAT8) 0.273650875964725 14 0.231238946869792 0.873040679774205 458 0.514844955722606 3 3 0 -6.73910995003227 LTS-021 chr2 74092806 74093652 847 * STAMBP 0.459 1 NA 0.90845876459462 19 0.169397901766247 3 3 0 -5.76442913697537 LTS-021 chr2 74093653 74185876 92224 * c(STAMBP, DGUOK, ACTG2) 0.431247765138788 14 0.0507740090991444 0.852920275300079 136 0.427714579089347 2 1 1 -7.79040843910139 LTS-021 chr2 74185877 74274013 88137 * c(DGUOK, TET3) 0 1 NA 1.27238263599095 39 1.56611422912809 5 5 0 -5.76442027146799 LTS-021 chr2 74274014 74906458 632445 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DOK1, TET3, WBP1, HTRA2, TLX2, BOLA3, C2orf81, AUP1, MOB1A, SLC4A5, RTKN, TTC31, MOGS, INO80B, WDR54, LOXL3, PCGF1, CCDC142, LBX2) 0.105411387607923 17 0.195106079743665 0.964716436485667 1959 0.513318169974477 5 5 0 -6.96503178830748 LTS-021 chr2 74906459 75113572 207114 * c(SEMA4F, HK2) 0.475 1 NA 0.943165952553725 135 0.433145416328067 3 3 0 -5.76442487274691 LTS-021 chr2 75113573 77745735 2632163 * c(MIR5000, HK2, POLE4, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.294685643168353 14 0.206326477662503 0.961045356094523 505 0.49016677034803 3 3 0 -6.75429896316545 LTS-021 chr2 77745736 79350577 1604842 * c(SNAR-H, REG3G, REG1A, REG1B, LRRTM4) 0.371 1 NA 0.496314951203359 142 0.301975774350983 0 0 0 -5.77741201553498 LTS-021 chr2 79350578 79384060 33483 * REG1CP NA 0 NA 1.096 1 NA NA NA NA NA LTS-021 chr2 79384061 80772039 1387979 * c(MIR4264, CTNNA2, LRRTM1, REG3A) 0.206949535405405 6 0.242378560658047 0.769384412888297 168 0.619467290830054 2 2 0 -6.82135431823721 LTS-021 chr2 80772040 80801386 29347 * CTNNA2 0 1 NA 0.884110949438519 17 0.286463155930885 3 3 0 -5.76518099855085 LTS-021 chr2 80801387 85048938 4247552 * c(TRABD2A, CTNNA2, DHFRP3, DNAH6, FUNDC2P2, SUCLG1) 0.120380921226455 9 0.228648991056403 0.774300642664124 528 0.41794472618565 2 2 0 -7.08566955264944 LTS-021 chr2 85048939 85049031 93 * TRABD2A NA 0 NA 1.757 1 NA NA NA NA NA LTS-021 chr2 85049032 85097693 48662 * TRABD2A 0 2 0 0.996655308860676 46 0.744946227025428 0 0 0 -Inf LTS-021 chr2 85097694 85570186 472493 * c(TGOLN2, TRABD2A, RETSAT, KCMF1, TCF7L1, TMSB10) 0.205 1 NA 0.97339979924108 381 0.478932339349534 3 3 0 -5.766035566491 LTS-021 chr2 85570187 86393819 823633 * c(PARTICL, GNLY, USP39, VAMP5, IMMT, TMEM150A, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, RETSAT, PTCD3, SFTPB, SNORD94, CAPG, ELMOD3, ATOH8, VAMP8, ST3GAL5, LOC90784) 0.250290221612229 27 0.225638871396088 1.06200613216435 1479 0.584075453785007 4 4 0 -6.74081309893434 LTS-021 chr2 86393820 86408385 14566 * IMMT 0.492 1 NA 0.90940630843686 25 0.59000650561385 3 3 0 -5.76443541442213 LTS-021 chr2 86408386 86509267 100882 * c(MIR4779, IMMT, MRPL35, REEP1) 0.417547332587257 13 0.126561477916101 0.925487969350929 211 0.42485640501677 2 1 1 -6.8740107802583 LTS-021 chr2 86509268 86711254 201987 * c(KDM3A, REEP1) NA 0 NA 1.03868730815709 116 0.632838545849132 4 NA NA -5.76516565425066 LTS-021 chr2 86711255 86732153 20899 * c(RNF103-CHMP3, CHMP3, KDM3A) 0 1 NA 0.818579813305402 69 0.466769616277995 2 2 0 -5.76450778377145 LTS-021 chr2 86732154 87408669 676516 * c(ANAPC1P1, RNF103-CHMP3, LOC285074, CHMP3, RMND5A, RNF103, CD8A, CD8B) 0.246453483283725 14 0.215662345467973 0.794037113498327 522 0.546710940750941 2 2 0 -6.77012274449704 LTS-021 chr2 87408670 87426774 18105 * RMND5A 0.453255573087213 2 0.0169705627484772 0.32489298967612 81 0.404247077911517 0 0 0 -12.7069953008872 LTS-021 chr2 87929222 88326821 397600 * c(KRCC1, RMND5A) 0.302674119861829 3 0.0828311535595153 0.705587971752835 28 0.486964439234905 2 2 0 -6.74516731915312 LTS-021 chr2 88326822 88390579 63758 * c(MIR4780, SMYD1, KRCC1) 0 1 NA 0.878481904666427 61 0.4027069945969 3 3 0 -5.76544776701415 LTS-021 chr2 88390580 89247016 856437 * c(MIR4436A, SMYD1, TEX37, FABP1, RPIA, FOXI3, THNSL2, ANKRD36BP2, EIF2AK3) 0.0753500173827965 16 0.183898704001234 0.799733748677646 567 0.453585428835372 3 3 0 -7.34348046520819 LTS-021 chr2 89247017 89247097 81 * character(0) NA 0 NA 0.459 1 NA NA NA NA NA LTS-021 chr2 89247098 90007760 760663 * character(0) 0 4 0 0.494574728669748 146 0.514787614414579 0 0 0 -Inf LTS-021 chr2 90007761 90259965 252205 * character(0) 0.386 1 NA 0.57758718049532 97 0.718580002307673 1 1 0 -5.76681504125055 LTS-021 chr2 90259966 90260036 71 * character(0) NA 0 NA 0.239187495862641 3 0.225743955253144 0 NA NA -5.76480801406405 LTS-021 chr2 91766520 91955068 188549 * LOC654342 0.353769386131333 14 0.11676650882174 0.781030687890664 87 0.440078393298355 2 1 1 -6.73367139975396 LTS-021 chr2 91955069 91955470 402 * character(0) NA 0 NA 1.07717008835954 5 0.312199775784673 4 NA NA -5.76441059055884 LTS-021 chr2 95537183 95537329 147 * c(TEKT4, LOC442028) 0 1 NA 1.30720911372448 5 1.23435055798586 5 5 0 -5.76441027093429 LTS-021 chr2 95537330 96049905 512576 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.24985469918654 13 0.191293203600101 0.980825853592628 508 0.633431513760673 3 3 0 -6.73595258932998 LTS-021 chr2 96049906 96050022 117 * KCNIP3 NA 0 NA 0.573 1 NA NA NA NA NA LTS-021 chr2 96050023 96504479 454457 * c(TRIM43, KCNIP3, FAHD2A, TRIM43B) 0.153021831020485 6 0.2356011460074 0.703403851881712 277 0.671857191565137 3 3 0 -6.90249313971249 LTS-021 chr2 96504480 96601240 96761 * character(0) 0.379 1 NA 0.797818368949521 27 0.42576567529148 2 2 0 -5.76448709658201 LTS-021 chr2 96601241 96789761 188521 * c(GPAT2, ADRA2B, ASTL, FAHD2CP) 0.374496308325774 29 0.119066690754764 0.75667579905646 269 0.471018416511856 2 1 1 -6.7459026146507 LTS-021 chr2 96789762 97166204 376443 * c(ITPRIPL1, DUSP2, SNRNP200, NCAPH, STARD7-AS1, ASTL, TMEM127, STARD7, NEURL3, CIAO1) 0.396789442990905 21 0.141071933694093 0.980131838896627 796 0.465631935697858 3 2 1 -6.78824493158449 LTS-021 chr2 97166205 97216374 50170 * c(ARID5A, NEURL3) 0 1 NA 1.29398680082217 41 0.554422963044659 5 5 0 -5.76455543419186 LTS-021 chr2 97216375 99154342 1937968 * c(MIR3127, ACTR1B, ARID5A, CNGA3, COX5B, FAHD2B, VWA3B, ANKRD23, TMEM131, CNNM4, CNNM3, INPP4A, ANKRD36, ANKRD39, FAM178B, SEMA4C, KANSL3, ANKRD36B, LINC01125, ZAP70, LMAN2L, FER1L5) 0.138284846844871 40 0.189294228988116 0.910684660974789 2090 0.515284929913288 3 3 0 -6.97259342221853 LTS-021 chr2 99154343 99172244 17902 * INPP4A 0.467 1 NA 0.954702031388127 57 0.417784553277636 3 3 0 -5.76442765592661 LTS-021 chr2 99172245 101925223 2752979 * c(TXNDC9, TBC1D8, MGAT4A, NMS, LYG1, MITD1, C2orf15, LONRF2, LYG2, UNC50, RNF149, KIAA1211L, INPP4A, AFF3, NPAS2, COA5, MRPL30, REV1, LIPT1, CNOT11, RPL31, SNORD89, PDCL3, TSGA10, CHST10, EIF5B) 0.296698529143655 64 0.210248445250277 0.949190220992843 2463 0.490062510442931 3 3 0 -6.75284607059143 LTS-021 chr2 101925224 101965175 39952 * c(MIR5696, CREG2) NA 0 NA 0.58 1 NA NA NA NA NA LTS-021 chr2 101965176 102083442 118267 * c(CREG2, RFX8) 0.0971083517961781 6 0.154533815069712 0.589330624594292 169 0.388075900774455 6 6 0 -7.23362650933146 LTS-021 chr2 102083443 102090564 7122 * RFX8 NA 0 NA 0.865 1 NA NA NA NA NA LTS-021 chr2 102090565 103057668 967104 * c(MIR4772, IL1R1, RFX8, IL1R2, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4) 0.284716514331977 29 0.22332918225194 0.911659171202126 735 0.516264821117025 3 3 0 -6.7426825747992 LTS-021 chr2 103057669 103141490 83822 * c(SLC9A4, IL18RAP) 0 1 NA 0.818636832022682 111 0.404601933371709 2 2 0 -5.76493313551015 LTS-021 chr2 103141491 105965075 2823585 * c(LOC100287010, LINC01158, GPR45, TMEM182, LINC01102, LINC01114, SLC9A4, POU3F3, MRPS9, SLC9A2, C2orf49, MFSD9, TGFBRAP1) 0.10524900276336 15 0.201543567309427 0.899967832226874 839 0.456150221253847 3 3 0 -7.07881294854378 LTS-021 chr2 105965076 106013147 48072 * FHL2 0.492 1 NA 1.09811609994232 123 1.05273119102129 4 4 0 -5.76441097094412 LTS-021 chr2 106013148 112524028 6510881 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, SULT1C2P1, CCDC138, LINC00116, FHL2, SULT1C4, LOC285000, PLGLA, RGPD4, SH3RF3, LIMS1, SULT1C3, NPHP1, MIR4435-2HG, ACOXL, RANBP2, SLC5A7, SOWAHC, RGPD3, SULT1C2, BUB1, RGPD4-AS1, MALL, UXS1, NCK2, C2orf40, ST6GAL2, GCC2) 0.29221970866353 43 0.20763088841747 0.903978500270761 2271 0.504910512257475 3 3 0 -6.76984023190097 LTS-021 chr2 112524029 112579053 55025 * ANAPC1 0.259226151027533 4 0.205841970129191 0.429652357458429 127 0.425945222074945 2 2 0 -6.82215875173837 LTS-021 chr2 112579054 112582505 3452 * ANAPC1 NA 0 NA 1.067 1 NA NA NA NA NA LTS-021 chr2 112582506 113421334 838829 * c(MERTK, FBLN7, TTL, ZC3H6, FLJ42351, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.319860768471737 29 0.205325765433223 0.973404727607644 1187 2.49966050624893 4 3 1 -6.73722779907315 LTS-021 chr2 113421335 113479031 57697 * SLC20A1 0 1 NA 1.29952084432366 3 1.47612510761566 5 5 0 -5.76443922057766 LTS-021 chr2 113479032 113593687 114656 * c(CKAP2L, IL1A, IL1B) 0.0874779186349165 10 0.194956433879755 0.872261881085875 292 0.584796133391233 8 8 0 -6.88199639574142 LTS-021 chr2 113593688 113763463 169776 * c(IL37, IL36A, IL1B, IL36G) 0.397 1 NA 0.6667024512294 85 0.269869035568261 1 1 0 -5.76831840109157 LTS-021 chr2 113763464 113940839 177376 * c(PSD4, IL36RN, IL36B, IL36A, IL1RN, IL1F10) 0.337116979370796 20 0.183131359239323 0.815703977520272 279 0.544138294826558 2 1 1 -6.74098539561413 LTS-021 chr2 113940840 113941083 244 * PSD4 0 1 NA 0.953202073775432 7 1.08674866766271 3 3 0 -5.76441016355713 LTS-021 chr2 113941084 114004574 63491 * c(PSD4, PAX8-AS1, PAX8) 0.0988902171132261 4 0.2285 1.0624925323826 243 0.635498759023549 9 9 0 -6.77969871067871 LTS-021 chr2 114004575 114035847 31273 * c(PAX8-AS1, PAX8) NA 0 NA 0.349 1 NA NA NA NA NA LTS-021 chr2 114035848 114425155 389308 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, WASH2P, FAM138B, PAX8, DDX11L2) 0 1 NA 0.53913285540127 106 0.437105908964169 0 0 0 -5.78135035679972 LTS-021 chr2 114425156 114425311 156 * character(0) NA 0 NA 1.312 1 NA NA NA NA NA LTS-021 chr2 114425312 114501217 75906 * c(MIR4782, SLC35F5) 0.162179037987336 6 0.19524753519571 0.930942851292888 86 0.505519698320329 6 6 0 -6.7673933663128 LTS-021 chr2 114501218 114513386 12169 * SLC35F5 0.433 1 NA 0.774139384262892 25 0.264825558937703 2 2 0 -5.76443240672724 LTS-021 chr2 114513387 115822286 1308900 * c(LOC100499194, ACTR3, LINC01191, DPP10, SLC35F5) 0.468194478347106 9 0.0274853496329307 0.924220733478019 215 0.463285034475404 2 1 1 -11.1634794217737 LTS-021 chr2 115822287 116535405 713119 * c(DPP10-AS1, DPP10) 0 1 NA 0.79023433406586 95 0.450827099793451 2 2 0 -5.76448467715811 LTS-021 chr2 116535406 127810987 11275582 * c(RNU4ATAC, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, CLASP1, NIFK-AS1, GLI2, BIN1, TFCP2L1, GYPC, INHBB, INSIG2, CCDC93, STEAP3, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, TMEM177, NIFK, LINC01101, MARCO, DDX18) 0.190100159645325 65 0.221141604259839 0.910906062674188 3014 0.464849919897112 3 3 0 -6.81934143922884 LTS-021 chr2 127810988 127945046 134059 * c(BIN1, CYP27C1) 0 1 NA 1.13570912786596 129 0.575340887956567 4 4 0 -5.76478598071957 LTS-021 chr2 127945047 128948754 1003708 * c(MIR4783, MAP3K2, ERCC3, GPR17, CYP27C1, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, SAP130, AMMECR1L, SFT2D3) 0.0358425993261446 19 0.124651725345376 0.979276803961356 1865 0.496441964882414 6 6 0 -7.73949146934665 LTS-021 chr2 128948755 129075961 127207 * c(UGGT1, HS6ST1) 0.333 1 NA 1.03064133081776 163 0.943532367160781 4 4 0 -5.76469600616826 LTS-021 chr2 129075962 130737359 1661398 * c(RAB6C-AS1, LOC389033, RAB6C, HS6ST1) NA 0 NA 0.960933642516281 11 0.405721781072157 3 NA NA -5.76771859089254 LTS-021 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.126 1 NA NA NA NA NA LTS-021 chr2 130737484 130739829 2346 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.405115997796828 50 0.188211318491113 0 NA NA -5.76552975440004 LTS-021 chr2 130739830 130739891 62 * RAB6C 0.407 1 NA 1.059 1 NA NA NA NA NA LTS-021 chr2 130739892 131131869 391978 * c(TUBA3E, PTPN18, MED15P9, FAR2P1, SMPD4, POTEF, MZT2B, RAB6C, CCDC115, CCDC74B, IMP4) 0.325970243251846 33 0.172360335423417 0.999752065027034 577 0.749901721877103 4 3 1 -6.73782073884084 LTS-021 chr2 131131870 131519913 388044 * c(CYP4F30P, FAR2P2, AMER3, PTPN18, GPR148, CFC1, POTEI, CFC1B, POTEJ) 0 1 NA 0.782704400100568 113 0.622147503887077 2 2 0 -5.76441803390203 LTS-021 chr2 131519914 131796656 276743 * c(AMER3, ARHGEF4) 0.0476683775739252 9 0.148333333333333 0.762348152560387 241 0.643961204781916 9 9 0 -7.2488083474835 LTS-021 chr2 131796657 132120172 323516 * c(FAM168B, WTH3DI, LOC440910, POTEE, ARHGEF4, PLEKHB2) NA 0 NA 0.877012385853918 235 0.458849768940169 3 NA NA -5.76867068308708 LTS-021 chr2 132120173 132179876 59704 * c(WTH3DI, LINC01120) NA 0 NA 0.38553830135302 51 0.193868289633685 0 NA NA -5.80913814184772 LTS-021 chr2 132179877 132181174 1298 * character(0) NA 0 NA 0.907 1 NA NA NA NA NA LTS-021 chr2 132181175 132200307 19133 * NOC2LP2 0.461 1 NA 0.881083032371683 5 0.324990461398485 3 3 0 -5.76484660134534 LTS-021 chr2 132200308 132275396 75089 * c(MIR4784, TUBA3D, LOC150776, NOC2LP2, MZT2A) 0.387574069029768 28 0.146663253026652 0.893266402374493 214 0.737623815061108 2 1 1 -6.75947011552928 LTS-021 chr2 132275397 132277261 1865 * LOC150776 0 1 NA 0.845197558892493 19 1.37652038218586 2 2 0 -5.76441329658108 LTS-021 chr2 132277262 135722143 3444882 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, LOC150776, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, TMEM163, CCNT2, CCDC74A) 0.274693482721363 39 0.204096660172716 0.899495384072519 1046 0.526242481687831 3 3 0 -6.75003369885405 LTS-021 chr2 135722144 135740910 18767 * MAP3K19 0 1 NA 0.45835450255673 29 0.544821614047208 0 0 0 -5.76448504670512 LTS-021 chr2 135740911 136670024 929114 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, MAP3K19, ZRANB3) 0.000176767251849655 10 0.00411096095821889 0.851140036105894 1036 0.386935165253013 20 20 0 -23.1979040509645 LTS-021 chr2 136670025 136873084 203060 * c(DARS, CXCR4) 0.452 1 NA 0.910488824608856 85 0.301179362512376 3 3 0 -5.76566290236843 LTS-021 chr2 136873085 141032088 4159004 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, CXCR4, THSD7B) 0.275407833880806 18 0.211797967612929 0.799189113511267 606 0.445635327683951 2 2 0 -6.74491480115254 LTS-021 chr2 141032089 141946014 913926 * LRP1B 0 1 NA 0.815631000775977 385 0.378159486495753 2 2 0 -5.7698214767905 LTS-021 chr2 141946015 149271096 7325082 * c(ZEB2-AS1, TEX41, ORC4, LRP1B, MBD5, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.131378601081299 8 0.221311311117555 0.779510596608416 888 0.512658710934854 2 2 0 -7.06402831241496 LTS-021 chr2 149271097 152273229 3002133 * c(MIR4773-1, MIR4773-2, LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, RIF1, TNFAIP6, NMI) 0.0402428322969062 13 0.111217389343158 0.945054091916155 887 0.501747340828649 4 4 0 -8.21447490452248 LTS-021 chr2 152273230 152311570 38341 * RIF1 0.486 1 NA 1.23727575145826 79 0.450329826474761 5 5 0 -5.76441463125705 LTS-021 chr2 152311571 152500957 189387 * c(NEB, RIF1) 0.262368415545846 20 0.222962464388775 0.937637550670424 711 0.439009532728244 3 3 0 -6.73314762693342 LTS-021 chr2 152500958 152511889 10932 * NEB 0 1 NA 0.82544549840623 31 0.471642800414462 2 2 0 -5.76448250597535 LTS-021 chr2 152511890 158114268 5602379 * c(LOC100144595, STAM2, FMNL2, GALNT13, ARL6IP6, ARL5A, GPD2, KCNJ3, NEB, NR4A2, PRPF40A, RPRM, CACNB4) 0.103214737591741 20 0.202035503654289 0.91189916770509 1798 0.484483105461991 3 3 0 -7.0831554976998 LTS-021 chr2 158114269 158485327 371059 * c(GALNT5, ACVR1C, ERMN, CYTIP) 0 4 0 0.713663897842455 398 0.43090223127202 0 0 0 -Inf LTS-021 chr2 158485328 159077063 591736 * c(ACVR1C, CCDC148, UPP2, CCDC148-AS1, ACVR1) 0 5 0 0.857799008478019 191 0.438078141971736 0 0 0 -Inf LTS-021 chr2 159077064 159196771 119708 * c(CCDC148, CCDC148-AS1) 0.375 1 NA 0.791154652044455 33 0.376627425718083 2 2 0 -5.76443576380693 LTS-021 chr2 159196772 160599595 1402824 * c(CCDC148, WDSUB1, BAZ2B, MARCH7, PKP4, TANC1, DAPL1) 0.362763699583329 16 0.181876503430212 0.966922361894705 762 0.478670115192266 3 2 1 -6.73746389540576 LTS-021 chr2 160599596 160604811 5216 * MARCH7 0 1 NA 0.843199382578314 19 0.72843723615528 2 2 0 -5.76443971382333 LTS-021 chr2 160604812 162081237 1476426 * c(TANK, LY75-CD302, MIR4785, PLA2R1, ITGB6, LY75, RBMS1, MARCH7, CD302) 0.161429071603091 13 0.239336100976784 0.980272493942748 900 0.541966855325729 4 4 0 -6.8119243772303 LTS-021 chr2 162081238 164450352 2369115 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.172452981165879 13 0.223134804603946 0.727025255502536 1064 0.420098399953407 2 2 0 -6.97119317733422 LTS-021 chr2 164450353 164459089 8737 * character(0) NA 0 NA 1.055 1 NA NA NA NA NA LTS-021 chr2 164459090 165771807 1312718 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN) 0.1531351307197 19 0.225553212040947 0.991293972007258 630 0.586538565273639 4 4 0 -6.81715362361468 LTS-021 chr2 165771808 165772315 508 * SLC38A11 NA 0 NA 0.713 1 NA NA NA NA NA LTS-021 chr2 165772316 167163043 1390728 * c(LOC100506124, TTC21B-AS1, SLC38A11, GALNT3, SCN1A, SCN2A, SCN3A, SCN9A, TTC21B, CSRNP3) 0.173047140143183 19 0.221031394134368 0.763995907185761 1430 0.725882038847581 3 3 0 -6.88937612930228 LTS-021 chr2 167163044 167273298 110255 * c(SCN7A, SCN9A) 0 1 NA 0.738660867603708 101 0.336060143426738 2 2 0 -5.76662765070275 LTS-021 chr2 167273299 168726223 1452925 * c(XIRP2, SCN7A, B3GALT1) 0 3 0 0.674676988065251 407 0.313712205168845 0 0 0 -Inf LTS-021 chr2 168726224 169996998 1270775 * c(MIR4774, CERS6-AS1, DHRS9, NOSTRIN, CERS6, STK39, LRP2, SPC25, G6PC2, ABCB11, B3GALT1) 0 11 0 0.904890307908982 769 0.529847737169339 0 0 0 -Inf LTS-021 chr2 169996999 170003432 6434 * LRP2 0.5 1 NA 0.986228472552075 15 0.428265049217132 3 3 0 -5.76446141336819 LTS-021 chr2 170003433 171649402 1645970 * c(NA, PHOSPHO2-KLHL23, KLHL41, BBS5, CCDC173, UBR3, MYO3B, KLHL23, METTL5, SP5, LRP2, LINC01124, PHOSPHO2, SSB, FASTKD1, PPIG) 0.339742156726588 45 0.191008210199552 0.904252465142693 1783 0.444201203516885 3 2 1 -6.74364014832876 LTS-021 chr2 171649403 171649433 31 * character(0) 0 1 NA 1.09768831587554 3 0.284246958353706 4 4 0 -5.76441014085995 LTS-021 chr2 171649434 172641051 991618 * c(DYNC1I2, GAD1, GORASP2, METTL8, CYBRD1, DCAF17, SLC25A12, TLK1) 0.095036565189821 11 0.199267796057101 0.968700920549426 889 0.460863982584846 4 4 0 -7.02329179817392 LTS-021 chr2 172641052 172864695 223644 * c(HAT1, SLC25A12) 0.46 1 NA 0.943613135562626 181 0.383494253676406 3 3 0 -5.76443472188992 LTS-021 chr2 172864696 174772928 1908233 * c(RAPGEF4, DLX1, DLX2, METAP1D, MLK7-AS1, ITGA6, PDK1, ZAK, SP3, CDCA7, RAPGEF4-AS1) 0.345494517971254 22 0.175661871428017 0.976479173322924 1105 0.441016762728146 3 2 1 -6.74376674220257 LTS-021 chr2 174772929 174777976 5048 * SP3 0 1 NA 0.893101358030447 43 0.253548279011297 3 3 0 -5.7645270712747 LTS-021 chr2 174777977 176042217 1264241 * c(MIR933, SP9, CHN1, CHRNA1, ATF2, GPR155, LINC01305, OLA1, ATP5G3, SP3, WIPF1, SCRN3, CIR1) 0.204349473375993 18 0.228826024903643 0.971123638465335 1033 0.849260541448048 4 4 0 -6.75306158589963 LTS-021 chr2 176042218 176043097 880 * ATP5G3 0.475 1 NA 0.761329148964389 21 0.36434753817122 2 2 0 -5.76441403014359 LTS-021 chr2 176043098 178482594 2439497 * c(LOC100130691, MIR1246, MIR3128, HOXD-AS2, MTX2, TTC30B, HNRNPA3, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, NFE2L2, ATP5G3, LNPK, AGPS, TTC30A) 0.409197182059924 20 0.118770499615634 0.944866397585356 1322 0.491424137083212 3 2 1 -6.85762167468434 LTS-021 chr2 178482595 178493098 10504 * c(PDE11A, TTC30A) 0 1 NA 0.856277967648729 23 0.552125383165072 2 2 0 -5.76456379249673 LTS-021 chr2 178493099 179345183 852085 * c(MIR548N, OSBPL6, RBM45, DFNB59, PDE11A, FKBP7, PRKRA) 0.257081442282093 12 0.209179837808175 0.86592704368908 603 0.452437997088869 3 3 0 -6.74932561542264 LTS-021 chr2 179345184 179368902 23719 * c(MIR548N, PLEKHA3) 0 1 NA 0.857104226039239 57 0.411445756937966 2 2 0 -5.76504898229395 LTS-021 chr2 179368903 179401112 32210 * c(MIR548N, TTN-AS1, PLEKHA3, TTN) 0 3 0 0.816085544538186 227 0.397061316838912 0 0 0 -Inf LTS-021 chr2 179401113 179647727 246615 * c(MIR548N, TTN-AS1, TTN) 0.0843717221136747 41 0.199761345414851 0.638700572038281 2762 0.35672787659087 3 3 0 -7.32852815177676 LTS-021 chr2 179647728 179738826 91099 * c(CCDC141, TTN) 0 4 0 0.853400608061349 227 0.524104312068368 0 0 0 -Inf LTS-021 chr2 179738827 179967969 229143 * c(CCDC141, SESTD1) 0.453 1 NA 0.863121611346328 171 0.390677952020206 3 3 0 -5.77075470833447 LTS-021 chr2 179967970 180815412 847443 * c(MIR1258, ZNF385B, CWC22, SESTD1) 0.31251717960893 12 0.204990964324151 0.842342615074514 354 0.382485144345811 2 2 0 -6.75211036055735 LTS-021 chr2 180815413 180819711 4299 * CWC22 0 1 NA 0.967070762983996 15 0.319508253116447 3 3 0 -5.76443248706295 LTS-021 chr2 180819712 185802243 4982532 * c(MIR4437, UBE2E3, NCKAP1, NUP35, DUSP19, PPP1R1C, FRZB, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, ZNF804A) 0.197247499747292 52 0.222600700854953 0.874560255343275 1443 0.560611212356517 3 3 0 -6.82653821496938 LTS-021 chr2 185802244 185803046 803 * ZNF804A 0 1 NA 0.600780351125334 17 0.749809568961268 1 1 0 -5.76441238155004 LTS-021 chr2 185803047 187530007 1726961 * c(ITGAV, FSIP2, ZC3H15, ZNF804A) 0.0504459176148865 12 0.155170360923376 0.872182105989698 750 0.462037263593339 4 4 0 -7.65579258951115 LTS-021 chr2 187530008 187703838 173831 * c(ZSWIM2, FAM171B, ITGAV) 0.5 1 NA 0.894393240041423 313 1.23197838073782 3 3 0 -5.76457097045058 LTS-021 chr2 187703839 189866199 2162361 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, ZSWIM2, GULP1, MIR561, TFPI) 0.42145543262578 18 0.0521557496564111 0.853083780857569 626 0.71046431952911 2 1 1 -7.53859786529991 LTS-021 chr2 189866200 189901403 35204 * c(COL3A1, COL5A2) 0 1 NA 0.873705604235559 163 0.269756698876328 3 3 0 -5.7659053551767 LTS-021 chr2 189901404 196825215 6923812 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, DNAH7, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.157683988988707 46 0.204959947778186 0.909420066193393 3035 0.557564407459613 3 3 0 -6.89028559834334 LTS-021 chr2 196825216 196825402 187 * DNAH7 0.464 1 NA 0.383481875205594 5 0.352813406774743 0 0 0 -5.76445463498749 LTS-021 chr2 196825403 197106759 281357 * c(DNAH7, HECW2, STK17B) 0.352353869838267 12 0.175317957904022 0.914713859772611 303 0.408515546430365 3 2 1 -6.7338044219293 LTS-021 chr2 197106760 197106830 71 * HECW2 0 1 NA 1.57820553861107 3 1.71083030524168 7 7 0 -5.76441013884562 LTS-021 chr2 197106831 198592803 1485973 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, MARS2, GTF3C3) 0.21344617227057 41 0.218532143084205 0.854616003773192 1564 0.514169164146068 3 3 0 -6.78884974411414 LTS-021 chr2 198592804 198592902 99 * BOLL NA 0 NA 0.733 1 NA NA NA NA NA LTS-021 chr2 198592903 199013131 420229 * c(PLCL1, BOLL) 0.354296637325753 3 0.280022022943434 0.640358799240954 209 0.356815308244538 1 1 0 -6.73426396290954 LTS-021 chr2 199013132 199013183 52 * PLCL1 NA 0 NA 0.838 1 NA NA NA NA NA LTS-021 chr2 199013184 201437328 2424145 * c(TYW5, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, SPATS2L, FTCDNL1, PLCL1, C2orf47) 0.224504934284283 14 0.234299857185025 0.983987338419399 663 0.466480395943976 3 3 0 -6.76098187721132 LTS-021 chr2 201437329 201440809 3481 * SGO2 0 1 NA 0.867328029903866 35 0.567766014356992 3 3 0 -5.76445066948243 LTS-021 chr2 201440810 201775176 334367 * c(LOC100507140, CLK1, SGO2, AOX1, AOX2P, ORC2, PPIL3, NIF3L1, BZW1) 0 12 0 0.928288769625144 528 0.582664732933072 0 0 0 -Inf LTS-021 chr2 201775177 202025621 250445 * c(FAM126B, NDUFB3, ORC2, CFLAR-AS1, CFLAR) 0.398 1 NA 0.951776041633393 319 0.55204811158591 3 3 0 -5.76450409608392 LTS-021 chr2 202025622 206892962 4867341 * c(SNORD11B, KIAA2012, ABI2, PARD3B, ICA1L, ALS2CR12, CTLA4, FAM117B, ALS2CR11, ICOS, NOP58, INO80D, STRADB, WDR12, CYP20A1, ALS2, MPP4, RAPH1, CDK15, TMEM237, NBEAL1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, NRP2, CFLAR, CD28) 0.202247136041064 65 0.220465124574945 0.974118050400847 4231 0.548660145263741 3 3 0 -6.78613706900854 LTS-021 chr2 206892963 206911228 18266 * INO80D 0.482 1 NA 1.11457159158671 7 0.642520260936794 4 4 0 -5.76442133704163 LTS-021 chr2 206911229 207040690 129462 * c(GCSHP3, EEF1B2, SNORD51, GPR1, NDUFS1, INO80D, SNORA41) 0.428469419215454 6 0.0471536495582968 1.13959956447536 212 0.837140327432946 4 2 2 -7.85342805575303 LTS-021 chr2 207040691 207834257 793567 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, ADAM23) 0.272923267044799 23 0.198845700602807 0.737150955993136 814 0.389499051456125 2 2 0 -6.75690170279943 LTS-021 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.38 1 NA NA NA NA NA LTS-021 chr2 207908643 208866664 958022 * c(MIR2355, MIR4775, CREB1, METTL21A, CCNYL1, PLEKHM3, FZD5, KLF7) 0.407295874753 10 0.145582508106801 1.06272372090361 858 0.614822383117291 4 2 2 -6.80345164913728 LTS-021 chr2 208866665 210557542 1690878 * c(LOC100507443, IDH1-AS1, CRYGA, CRYGB, CRYGC, CRYGD, PIKFYVE, IDH1, PLEKHM3, C2orf80, MAP2, PTH2R) 0.289074578483776 18 0.225593922008238 0.867122428028614 644 0.650438095310587 2 2 0 -6.75778737490934 LTS-021 chr2 210557543 210559425 1883 * MAP2 0 1 NA 0.66385257998422 37 0.570520287016945 1 1 0 -5.7644183267667 LTS-021 chr2 210559426 212242708 1683283 * c(LANCL1, CPS1, KANSL1L, ERBB4, UNC80, CPS1-IT1, ACADL, MAP2, MYL1, RPE) 0.0465013553860261 16 0.139318086286981 0.838389033392371 1343 0.390378016750226 3 3 0 -7.96498520985458 LTS-021 chr2 212242709 212243703 995 * ERBB4 0.429 1 NA 1.08761866505608 21 0.245843368641015 4 4 0 -5.76441028758913 LTS-021 chr2 212243704 215592094 3348391 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, ERBB4, IKZF2, VWC2L, SPAG16) 0.172981389996187 22 0.202842804810039 0.906032341790923 682 0.464371357824345 3 3 0 -6.85133361765594 LTS-021 chr2 215592095 215592906 812 * character(0) 0.43 1 NA 0.817042880282773 17 0.603306209443381 2 2 0 -5.76441220079421 LTS-021 chr2 215592907 216230216 637310 * c(FN1, ABCA12, ATIC, BARD1) 0.442573579857615 17 0.0612830343089965 0.79922709894983 564 0.473063132620576 2 1 1 -7.71097042264597 LTS-021 chr2 216230217 216236811 6595 * FN1 0 1 NA 0.880239109069083 21 0.460566240517867 3 3 0 -5.76448732421075 LTS-021 chr2 216236812 216248966 12155 * FN1 NA 0 NA 0.736416420266933 65 0.244731215394484 2 NA NA -5.764917936499 LTS-021 chr2 216248967 216249540 574 * FN1 NA 0 NA 1.048 1 NA NA NA NA NA LTS-021 chr2 216249541 217735785 1486245 * c(PKI55, FN1, IGFBP2, IGFBP5, SMARCAL1, MREG, PECR, MARCH4, RPL37A, LINC00607, TNP1, XRCC5, TMEM169) 0.223422780707652 24 0.227899382673996 1.00422354522619 972 0.651524824704983 4 4 0 -6.74782445137534 LTS-021 chr2 217735786 218604356 868571 * DIRC3 0.467 1 NA 0.796586790501917 23 0.211021887855621 2 2 0 -5.76668905045172 LTS-021 chr2 218604357 219501328 896972 * c(ARPC2, AAMP, GPBAR1, PNKD, RUFY4, CXCR1, CXCR2, CXCR2P1, CATIP, MIR26B, USP37, CTDSP1, TMBIM1, SLC11A1, TNS1, DIRC3, VIL1, PLCD4, CNOT9) 0.378865751351989 43 0.164520858728645 1.05080090562854 1788 0.554234547152845 4 2 2 -6.74568260667457 LTS-021 chr2 219501329 219501859 531 * PLCD4 0 1 NA 0.484398474555447 13 0.70089123667016 0 0 0 -5.76441021050917 LTS-021 chr2 219501860 219602819 100960 * c(STK36, BCS1L, RNF25, ZNF142, PLCD4, TTLL4) 0.224457119725144 20 0.22593336232289 0.9248387665737 490 0.566287689645257 4 4 0 -6.73828308532733 LTS-021 chr2 219602820 219605254 2435 * TTLL4 0 1 NA 0.823683832066381 31 0.635176241734935 2 2 0 -5.76441827011515 LTS-021 chr2 219605255 219923467 318213 * c(LOC100129175, MIR3131, CRYBA2, LINC00608, CYP27A1, CFAP65, IHH, MIR375, PRKAG3, FEV, WNT6, WNT10A, CDK5R2, TTLL4) 0.0564438554310973 13 0.174488115824839 1.00725016670183 791 0.534112344175765 7 7 0 -7.07229882670509 LTS-021 chr2 219923468 220072852 149385 * c(MIR3131, ZFAND2B, SLC23A3, CNPPD1, IHH, FAM134A, NHEJ1) 0.415 1 NA 1.06450570167196 347 0.566436942605436 4 4 0 -5.76459059555692 LTS-021 chr2 220072853 220436973 364121 * c(MIR3132, ABCB6, SPEG, TMEM198, ZFAND2B, DES, OBSL1, DNPEP, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, ANKZF1, ASIC4, PTPRN, TUBA4A, ATG9A, GLB1L, CHPF, TUBA4B, STK16) 0.37857879122326 50 0.171649590855371 1.04578109530997 1924 0.511326552563993 4 2 2 -6.74359496788664 LTS-021 chr2 220436974 220495822 58849 * c(STK11IP, INHA, SLC4A3) 0 1 NA 1.10267675458646 203 0.459087689029669 4 4 0 -5.76442626755888 LTS-021 chr2 220495823 224461848 3966026 * c(MIR4268, FARSB, MOGAT1, SGPP2, CCDC140, EPHA4, ACSL3, KCNE4, PAX3, SLC4A3, SCG2) 0.143443574086416 12 0.218415419452349 1.02499356097329 855 0.66822145508763 4 4 0 -6.83978471671611 LTS-021 chr2 224461849 224740544 278696 * c(AP1S3, WDFY1, SCG2) 0.190485218499515 4 0.256936438313707 0.797625579908419 124 0.54374471585858 3 3 0 -6.79067397348191 LTS-021 chr2 224740545 224862821 122277 * c(SERPINE2, WDFY1, MRPL44) 0.424 1 NA 1.00273468430952 205 0.392955450689624 3 3 0 -5.76647661770898 LTS-021 chr2 224862822 225630233 767412 * c(SERPINE2, DOCK10, FAM124B, CUL3) 0.362072660814019 16 0.154150575736842 0.948520297484082 308 0.474377522221027 3 2 1 -6.73467275169203 LTS-021 chr2 225630234 225635011 4778 * DOCK10 0 1 NA 0.801738930349502 15 0.429032277618008 2 2 0 -5.7644166174092 LTS-021 chr2 225635012 231120124 5485113 * c(MIR4439, MIR5702, MIR5703, SP140, COL4A3, COL4A4, FBXO36, SLC16A14, DAW1, AGFG1, SP110, IRS1, PID1, DOCK10, C2orf83, MFF, NYAP2, CCL20, LOC646736, LOC654841, TM4SF20, SPHKAP, SLC19A3, RHBDD1, DNER, TRIP12) 0.180218781591749 86 0.215676183847614 0.880451059998059 2850 0.604574017036444 3 3 0 -6.84929755770318 LTS-021 chr2 231120125 231236963 116839 * c(SP140, SP140L) 0.364 1 NA 0.757188608782963 119 0.367994414617361 2 2 0 -5.76510982974363 LTS-021 chr2 231236964 232457857 1220894 * c(MIR4777, NMUR1, SPATA3, LOC151475, LINC00471, LOC151484, C2orf57, C2orf72, SNORD82, HTR2B, SPATA3-AS1, NCL, CAB39, PSMD1, SNORD20, SNORA75, SP100, ARMC9, ITM2C, GPR55, B3GNT7, SP140L) 0.365098101057749 33 0.166951340216244 0.951454368696662 1298 0.526526879844226 3 2 1 -6.73589593489054 LTS-021 chr2 232457858 232597303 139446 * c(C2orf57, PDE6D, PTMA) 0 1 NA 1.03669217935924 81 0.455896571211032 4 4 0 -5.76549393746612 LTS-021 chr2 232597304 233445789 848486 * c(MIR1471, CHRND, CHRNG, DIS3L2, TIGD1, ALPI, ALPP, ALPPL2, ECEL1P2, NPPC, PDE6D, PRSS56, COPS7B, ECEL1, EIF4E2) 0.180667916581577 29 0.22298204548985 0.964625463038434 983 0.639928024903271 4 4 0 -6.77730046928927 LTS-021 chr2 233445790 233470931 25142 * c(EFHD1, EIF4E2) 0.491 1 NA 1.0252149728383 59 0.402534533732769 4 4 0 -5.76477990146645 LTS-021 chr2 233470932 234113057 642126 * c(NGEF, GIGYF2, INPP5D, KCNJ13, C2orf82, NEU2, EFHD1) 0.368975134586311 18 0.176195820950048 0.931405197757904 711 0.496557696095622 3 2 1 -6.73713578873948 LTS-021 chr2 234113058 234115601 2544 * INPP5D 0 1 NA 1.08330393298514 15 0.594437989877434 4 4 0 -5.76441040494867 LTS-021 chr2 234115602 234471530 355929 * c(INPP5D, ATG16L1, USP40, SAG, SCARNA6, SCARNA5, DGKD) 0.113849688957272 16 0.207888431616576 0.940263351950725 711 0.484537451619326 5 5 0 -6.90675441595747 LTS-021 chr2 234471531 234473954 2424 * USP40 NA 0 NA 0.552 1 NA NA NA NA NA LTS-021 chr2 234473955 234678263 204309 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.142180064152536 14 0.228468058700016 0.546984148010164 255 0.58959819671105 4 4 0 -6.97759050717051 LTS-021 chr2 234678264 234678270 7 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) NA 0 NA 0.71 1 NA NA NA NA NA LTS-021 chr2 234678271 236649560 1971290 * c(ARL4C, AGAP1, MSL3P1, SH3BP4, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, SPP2, TRPM8) 0.0564959576143028 20 0.16557202280833 0.839005227159157 834 0.605733085956854 4 4 0 -7.52276386604651 LTS-021 chr2 236649561 236761396 111836 * AGAP1 0.445 1 NA 0.918326168130608 57 0.475355383477987 3 3 0 -5.76455349904224 LTS-021 chr2 236761397 238483670 1722274 * c(COPS8, AGAP1, COL6A3, GBX2, ASB18, PRLH, ACKR3, RAB17, MLPH, IQCA1) 0.287898561391792 16 0.211423390380535 0.86707998759395 1032 0.482834815464945 3 3 0 -6.77183453907613 LTS-021 chr2 238483671 238672703 189033 * c(RAB17, LRRFIP1) 0.430336682388962 10 0.0415292400337133 1.11958442568176 220 0.550575666054607 4 2 2 -8.17071662883256 LTS-021 chr2 238672704 238674515 1812 * LRRFIP1 0 1 NA 0.931065491116151 25 1.10408189913611 3 3 0 -5.76441019452304 LTS-021 chr2 238674516 239039755 365240 * c(UBE2F-SCLY, RAMP1, UBE2F, ESPNL, RBM44, SCLY, LRRFIP1) 0.169651085097617 13 0.2414700968905 0.927328607185508 453 0.544630314840558 4 4 0 -6.78574901806029 LTS-021 chr2 239039756 239039841 86 * ESPNL 0.455 1 NA 0.820942187663643 3 0.521066534459212 2 2 0 -5.76441049952588 LTS-021 chr2 239039842 239360121 320280 * c(LOC151174, TRAF3IP1, ESPNL, KLHL30, ASB1, HES6, LOC643387, ILKAP, PER2) 0.381163815017035 36 0.161910584279062 1.03361949206121 841 0.49696694460988 4 2 2 -6.74812753928807 LTS-021 chr2 239360122 239360124 3 * ASB1 NA 0 NA 0.719 1 NA NA NA NA NA LTS-021 chr2 239360125 239972080 611956 * c(TWIST2, LINC01107, FLJ43879, ASB1, HDAC4) 0.256 1 NA 0.769872814004215 80 0.329203659166876 2 2 0 -5.7657859134555 LTS-021 chr2 239972081 242577022 2604942 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, MTERF4, OTOS, COPS9, OR6B3, LOC150935, AGXT, LOC200772, PASK, SNED1, GPC1, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, KIF1A, PPP1R7, RNPEPL1, PRR21, AQP12B, BOK, C2orf54, MGC16025, HDAC4, FARP2) 0.155615539484121 108 0.164177036586524 0.645470973172587 3495 0.457130806282036 1 1 0 -7.43291590468877 LTS-021 chr2 242577023 242607712 30690 * ATG4B 0 1 NA 0.804524377681951 61 0.438984934454015 2 2 0 -5.76446458737927 LTS-021 chr2 242607713 242815587 207875 * c(NEU4, DTYMK, ATG4B, RTP5, PDCD1, GAL3ST2, D2HGDH, ING5) 0 11 0 0.702218317621069 575 0.538615160954797 0 0 0 -Inf LTS-021 chr2 242815588 243037218 221631 * LOC728323 NA 0 NA 0.7424205472445 47 0.540734238040014 2 NA NA -5.76585969597446 LTS-021 chr3 239351 439918 200568 * CHL1 0 1 NA 0.863357749036013 113 0.30238595634209 3 3 0 -5.77361527516928 LTS-021 chr3 439919 3216857 2776939 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, IL5RA, TRNT1, CRBN) 0.131031509143259 16 0.2218064377635 0.824691155305274 626 0.411865485817479 2 2 0 -7.08605995550863 LTS-021 chr3 3216858 3886180 669323 * c(SUMF1, CRBN, LRRN1) 0.41 1 NA 1.04397192384806 21 0.570394963411945 4 4 0 -5.76689697359166 LTS-021 chr3 3886181 4355709 469529 * c(SUMF1, LRRN1, SETMAR) 0.448598377084006 5 0.0164772570532841 0.68302184123134 121 0.293916910027307 2 1 1 -12.6803809969616 LTS-021 chr3 4355710 4856234 500525 * c(EGOT, SUMF1, ITPR1, SETMAR) 0.368538257169229 12 0.17985876192842 0.950243441522753 426 0.441295287738711 3 2 1 -6.73687796159742 LTS-021 chr3 4856235 4888521 32287 * ITPR1 0 1 NA 1.02902844239555 49 1.13452614775155 4 4 0 -5.76446307936654 LTS-021 chr3 4888522 7735461 2846940 * c(BHLHE40-AS1, MIR4790, GRM7, ITPR1, ARL8B, BHLHE40, EDEM1) 0.138304176065079 10 0.229936126396489 0.920813280571591 522 0.563103925619823 3 3 0 -6.89661180997218 LTS-021 chr3 7735462 8543757 808296 * c(LMCD1-AS1, GRM7, LMCD1) 0.5 1 NA 1.07805952664033 43 0.731821437049612 4 4 0 -5.7645576794682 LTS-021 chr3 8543758 8810050 266293 * c(LINC00312, LMCD1, OXTR, SSUH2, CAV3) 0.399975010706343 15 0.123330836525563 0.986895820364919 308 0.488450408536069 4 2 2 -6.81010673013673 LTS-021 chr3 8810051 8919135 109085 * c(OXTR, RAD18) 0 1 NA 0.748852287479735 17 0.606350716315624 2 2 0 -5.76481748367937 LTS-021 chr3 8919136 9428270 509135 * c(SRGAP3-AS3, THUMPD3, THUMPD3-AS1, RAD18, SRGAP3) 0.254402762342433 14 0.230448964577247 0.970645896729104 532 0.443718256180322 3 3 0 -6.73502969575788 LTS-021 chr3 9428271 9475072 46802 * c(THUMPD3, THUMPD3-AS1, SETD5) 0 1 NA 0.878397039584256 15 1.05834012896206 3 3 0 -5.76452075368528 LTS-021 chr3 9475073 9785877 310805 * c(CPNE9, LHFPL4, SETD5, MTMR14, BRPF1) 0.0437403028313276 9 0.152333333333333 0.975532511269554 575 0.568115188412485 8 8 0 -7.18359504939446 LTS-021 chr3 9785878 9787527 1650 * BRPF1 0.488 1 NA 1.43195629570811 17 0.644834366557892 6 6 0 -5.76441148297376 LTS-021 chr3 9787528 9962157 174630 * c(ARPC4-TTLL3, ARPC4, TADA3, IL17RE, TTLL3, RPUSD3, OGG1, CIDEC, BRPF1, JAGN1, IL17RC, CAMK1) 0.388527986759463 19 0.14572039235652 1.03760855051702 761 0.672826995460643 4 2 2 -6.7606603251221 LTS-021 chr3 9962158 9986499 24342 * c(CIDEC, CRELD1, IL17RC) 0 1 NA 1.08210428093001 147 0.574352132087611 4 4 0 -5.76441373656977 LTS-021 chr3 9986500 10368093 381594 * c(GHRLOS, PRRT3-AS1, FANCD2OS, CIDECP, FANCD2, PRRT3, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, VHL, CRELD1, LINC00852, TATDN2) 0.207096227558605 19 0.20042685442976 0.978223722946253 935 0.634126887770892 4 4 0 -6.74551834376502 LTS-021 chr3 10368094 10368948 855 * ATP2B2 0.493 1 NA 0.752788081682318 18 0.200361478888089 2 2 0 -5.76443329261562 LTS-021 chr3 10368949 12861608 2492660 * c(MIR885, MKRN2OS, SLC6A1-AS1, ATG7, TAMM41, CAND2, MKRN2, LINC00606, HRH1, ATP2B2, PPARG, TMEM40, RAF1, SLC6A1, SLC6A11, SYN2, TIMP4, TSEN2, VGLL4) 0.354072325970915 38 0.190071374255889 0.935389842882943 1635 0.510051804952941 3 2 1 -6.73310669472436 LTS-021 chr3 12861609 12867181 5573 * CAND2 0 1 NA 1.02777778114893 9 0.768937813552638 4 4 0 -5.76443085025204 LTS-021 chr3 12867182 13612093 744912 * c(FBLN2, CAND2, NUP210, RPL32, HDAC11, IQSEC1) 0.0687814822150748 11 0.19195094070195 0.940323838898451 621 0.619077112261619 5 5 0 -7.09420162244496 LTS-021 chr3 13612094 13857858 245765 * c(FBLN2, LINC00620) 0.435 1 NA 0.896844424392896 117 0.372855750721186 3 3 0 -5.76661901048571 LTS-021 chr3 13857859 14709058 851200 * c(FGD5P1, CHCHD4, LSM3, TPRXL, CCDC174, SLC6A6, WNT7A, XPC, TMEM43, GRIP2) 0.288611201108577 16 0.237464936008105 0.979427768874297 831 0.443722577388128 3 3 0 -6.74685551484509 LTS-021 chr3 14709059 14713423 4365 * CCDC174 0 1 NA 0.926965806338366 35 0.586945580344306 3 3 0 -5.76441134292358 LTS-021 chr3 14713424 16300031 1586608 * c(MIR4270, FGD5-AS1, SH3BP5-AS1, GALNT15, METTL6, FGD5, ANKRD28, CAPN7, HACL1, DPH3, COL6A4P1, CCDC174, RBSN, MRPS25, BTD, MIR563, NR2C2, COLQ, C3orf20, EAF1, SH3BP5) 0.0741681566213396 26 0.173037465929736 0.939311745653286 1727 0.53107286235245 4 4 0 -7.24081957951917 LTS-021 chr3 16300032 16301327 1296 * DPH3 0.484 1 NA 1.05360505278909 25 0.297512027768066 4 4 0 -5.76442132864431 LTS-021 chr3 16301328 18386956 2085629 * c(MIR3714, DAZL, RFTN1, PLCL2, DPH3, LOC339862, OXNAD1, TBC1D5) 0.292422101885555 30 0.199608743733116 0.881215880687028 671 0.615567826930383 3 3 0 -6.76272251229532 LTS-021 chr3 18386957 19575820 1188864 * c(MIR4791, KCNH8, SATB1) 0.324393082314561 4 0.218377921655708 0.594904214038843 322 0.260833835643257 1 1 0 -6.77637848660813 LTS-021 chr3 19575821 24562877 4987057 * c(MIR548AC, MIR4792, SGO1-AS1, KCNH8, SGO1, PP2D1, EFHB, LINC00691, NKIRAS1, VENTXP7, RAB5A, RPL15, THRB-AS1, THRB, UBE2E1, UBE2E2, ZNF385D, KAT2B, NR1D2) 0.290025182554694 21 0.208965376489572 0.919139168118916 1068 0.449894001543215 3 3 0 -6.75257926604006 LTS-021 chr3 24562878 25656754 1093877 * c(MIR4792, RARB, TOP2B) 0 1 NA 0.830432273452658 147 0.351210588741582 2 2 0 -5.78079481833192 LTS-021 chr3 25656755 28579612 2922858 * c(MIR4442, LRRC3B, ZCWPW2, CMC1, NEK10, LINC00692, OXSM, NGLY1, AZI2, TOP2B, EOMES, SLC4A7) 0.0674001605582259 17 0.176184374515816 0.871796058479916 1127 0.524574192045015 3 3 0 -7.40614369661743 LTS-021 chr3 28579613 29804395 1224783 * c(RBMS3, LINC00693) 0.423 1 NA 1.24970555004992 41 1.0272172550266 5 5 0 -5.76441966829801 LTS-021 chr3 29804396 32208467 2404072 * c(OSBPL10-AS1, OSBPL10, STT3B, GPD1L, RBMS3, GADL1, ZNF860, TGFBR2) 0.278476875953593 17 0.226240323159974 0.92700781726299 817 0.903256410069069 3 3 0 -6.7376374733655 LTS-021 chr3 32208468 32280199 71732 * c(CMTM8, GPD1L) 0 1 NA 1.05139222419186 39 0.314917683051485 4 4 0 -5.76503055115773 LTS-021 chr3 32280200 37315155 5034956 * c(PDCD6IP, CRTAP, ARPP21, CMTM7, CCR4, TRIM71, CMTM8, CLASP2, FBXL2, CNOT10, SUSD5, GLB1, GOLGA4, MIR128-2, MLH1, DYNC1LI1, CMTM6, TMPPE, STAC, UBP1, DCLK3, LRRFIP2, EPM2AIP1, TRANK1) 0.111385605739083 33 0.209333334841247 0.927924048331391 2609 0.496083856200705 3 3 0 -7.02004035307671 LTS-021 chr3 37315156 37318147 2992 * GOLGA4 NA 0 NA 0.425 1 NA NA NA NA NA LTS-021 chr3 37318148 37323571 5424 * GOLGA4 NA 0 NA 0.410757796241159 40 0.311962356991172 0 NA NA -5.76520375969467 LTS-021 chr3 37323572 37458881 135310 * c(GOLGA4, C3orf35) 0.0456687024728034 5 0.10196469977399 1.05141599725539 221 0.509971844989529 14 14 0 -7.14790945878166 LTS-021 chr3 37458882 37627149 168268 * c(C3orf35, ITGA9) 0.462 1 NA 1.11132074439329 127 0.498277841569415 4 4 0 -5.76453640329183 LTS-021 chr3 37627150 38050781 423632 * c(CTDSPL, ITGA9, MIR26A1, VILL, PLCD1) 0.351027139475744 19 0.160990846421711 0.95495647695562 435 0.499931600353535 3 2 1 -6.73361833584631 LTS-021 chr3 38050782 38127811 77030 * c(PLCD1, DLEC1) 0 1 NA 1.05490895025555 118 0.413232295483329 4 4 0 -5.76473176058279 LTS-021 chr3 38127812 38138663 10852 * DLEC1 0 2 0 1.00209721419157 38 0.497929240404199 0 0 0 -Inf LTS-021 chr3 38138664 38401768 263105 * c(ACAA1, MYD88, SLC22A14, SLC22A13, DLEC1, XYLB, OXSR1) 0.0696819558129755 14 0.168353500405846 0.822459188551943 592 0.50354532911576 6 6 0 -7.1507728701509 LTS-021 chr3 38401769 38404472 2704 * XYLB 0.48 1 NA 0.872801140366311 9 0.23500319146769 3 3 0 -5.76456584191971 LTS-021 chr3 38404473 38596039 191567 * c(ACVR2B-AS1, SCN5A, ACVR2B, EXOG, XYLB) 0.345949207669799 9 0.202968662058402 0.861264425489724 347 0.505828067281049 3 2 1 -6.73744098936818 LTS-021 chr3 38596040 38597245 1206 * SCN5A 0 1 NA 1.55954268200633 3 0.915864072884181 7 7 0 -5.76441015796318 LTS-021 chr3 38597246 39139747 542502 * c(SCN11A, WDR48, SCN5A, SCN10A, GORASP1) 0.136259660297409 21 0.209077474817806 0.804959432230265 724 0.456904677048864 3 3 0 -6.97042114276812 LTS-021 chr3 39139748 39149092 9345 * GORASP1 0.392 1 NA 0.87355660213506 73 0.287551058929764 3 3 0 -5.76476114272323 LTS-021 chr3 39149093 40500338 1351246 * c(EIF1B, CCR8, CX3CR1, XIRP1, TTC21A, MYRIP, ENTPD3-AS1, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, CSRNP1, GORASP1, RPL14, ENTPD3) 0.276246857324548 30 0.218700448574978 0.83893709959639 957 0.541995176567283 2 2 0 -6.75208501175538 LTS-021 chr3 40500339 40502962 2624 * RPL14 NA 0 NA 1.31 1 NA NA NA NA NA LTS-021 chr3 40502963 40519532 16570 * c(ZNF619, RPL14) 0.484768532256246 2 0.00141421356237306 1.02603223452158 28 0.37869315802706 7 4 3 -28.9029708574572 LTS-021 chr3 40519533 40528438 8906 * ZNF619 0 1 NA 1.07344285466536 23 0.949543322728948 4 4 0 -5.76441185860805 LTS-021 chr3 40528439 41979618 1451180 * c(CTNNB1, ZNF620, ZNF619, ZNF621, ULK4) 0.0719826120026733 9 0.179273379073538 1.02962691262122 511 0.659885217149149 5 5 0 -7.0985823393382 LTS-021 chr3 41979619 42226151 246533 * c(TRAK1, ULK4) 0.493 1 NA 0.976632498634082 63 0.400224432685184 3 3 0 -5.76585684022714 LTS-021 chr3 42226152 42914012 687861 * c(CCDC13-AS1, ACKR2, LYZL4, KLHL40, CCDC13, CYP8B1, TRAK1, HIGD1A, NKTR, SS18L2, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.286264387709034 26 0.214999638640126 1.01082762444579 1173 0.554373939619323 3 3 0 -6.74982958699698 LTS-021 chr3 42914013 42914267 255 * c(ACKR2, CYP8B1) 0 1 NA 1.18938534282456 7 0.19730722961195 5 5 0 -5.76441833604005 LTS-021 chr3 42914268 42915534 1267 * c(ACKR2, CYP8B1) NA 0 NA 1.1989512101693 18 0.282779996010663 5 NA NA -5.76442367941377 LTS-021 chr3 42915535 44483856 1568322 * c(KRBOX1, SNRK-AS1, ACKR2, CYP8B1, TCAIM, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, SNRK, ANO10, FAM198A, POMGNT2) 0.181323686645214 24 0.235146666381101 0.830900027505848 984 0.58501622699531 3 3 0 -6.8388726000745 LTS-021 chr3 44483857 44485227 1371 * ZNF445 0.408 1 NA 1.34370825559044 21 0.589782720281679 6 6 0 -5.76441387867582 LTS-021 chr3 44485228 44640492 155265 * c(ZNF660, ZNF445, ZKSCAN7) 0.403020796282094 10 0.146678067738689 0.847475061973345 368 0.532632062155317 2 1 1 -6.79208421637217 LTS-021 chr3 44640493 44686502 46010 * ZNF197 0 1 NA 0.960777447723784 106 0.646539743822002 3 3 0 -5.76444573363993 LTS-021 chr3 44686503 44791637 105135 * c(ZNF197, ZNF501, KIAA1143, ZNF35, ZNF502) 0.173977549573001 4 0.238407214655933 0.793651780793597 272 0.464299102748435 4 4 0 -6.79163906154298 LTS-021 chr3 44791638 44794574 2937 * KIAA1143 NA 0 NA 0.383839358632161 64 0.140489294309126 0 NA NA -5.76880004074868 LTS-021 chr3 44794575 44970972 176398 * c(TMEM42, ZDHHC3, KIF15, KIAA1143, MIR564, TGM4) 0.101700932710491 15 0.191141857069061 0.854810352139199 477 0.572576578758434 7 7 0 -6.90723544981208 LTS-021 chr3 44970973 45017904 46932 * c(EXOSC7, ZDHHC3) 0.425 1 NA 0.952133517841272 41 0.441558518896144 3 3 0 -5.76443917439961 LTS-021 chr3 45017905 45187750 169846 * c(EXOSC7, CDCP1, CLEC3B) 0.293895375271528 9 0.231254429387009 1.0516322112391 195 0.425014580583651 5 4 1 -6.75122058271487 LTS-021 chr3 45187751 45589520 401770 * c(LARS2-AS1, LARS2, TMEM158, CDCP1) 0 1 NA 1.0671275095435 158 0.494780449797253 4 4 0 -5.76492904674121 LTS-021 chr3 45589521 45883676 294156 * c(SACM1L, LARS2, LZTFL1, SLC6A20, LIMD1-AS1, LIMD1) 0 8 0 0.979417776771417 619 0.578024637618081 0 0 0 -Inf LTS-021 chr3 45883677 45896445 12769 * LZTFL1 NA 0 NA 0.698 1 NA NA NA NA NA LTS-021 chr3 45896446 45943454 47009 * c(CCR9, LZTFL1) NA 0 NA 0.358764168643704 39 0.133970176148149 0 NA NA -5.89323449309434 LTS-021 chr3 45943455 45943543 89 * c(CCR9, LZTFL1) NA 0 NA 1.007 1 NA NA NA NA NA LTS-021 chr3 45943544 46449614 506071 * c(CXCR6, CCR9, CCR1, CCR3, CCR5, XCR1, LZTFL1, CCR2, FYCO1, CCRL2) 0.0475178591215627 14 0.153220608747828 0.840218558054206 718 0.449350651110431 5 5 0 -7.5035313934779 LTS-021 chr3 46449615 46449864 250 * CCRL2 0.45 1 NA 0.80200964072398 5 0.0435120672917295 2 2 0 -5.7644440828016 LTS-021 chr3 46449865 46713671 263807 * c(LOC100132146, ALS2CL, LTF, TDGF1, LRRC2, RTP3, LRRC2-AS1, CCRL2) 0.213486459726563 15 0.241247018239654 0.837741797865071 425 0.621137464236667 3 3 0 -6.75985611046515 LTS-021 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 1.153 1 NA NA NA NA NA LTS-021 chr3 46714809 47168097 453289 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.164566732257132 36 0.22938194909676 0.982617248164301 1122 0.611952925914404 4 4 0 -6.78451071624096 LTS-021 chr3 47168098 47187075 18978 * SETD2 0.354 1 NA 2.22342370741667 6 1.36649367604342 11 11 0 -5.76441458218254 LTS-021 chr3 47187076 47555142 368067 * c(SCAP, KLHL18, PTPN23, KIF9-AS1, SETD2, ELP6, KIF9) 0.420872030605863 10 0.151647288139287 0.982488747759651 596 0.502356608785759 4 2 2 -6.8456669468918 LTS-021 chr3 47555143 47620774 65632 * c(CSPG5, ELP6) 0 1 NA 1.03619506244174 67 0.812141968849481 4 4 0 -5.76457388533276 LTS-021 chr3 47620775 48200578 579804 * c(MIR1226, CSPG5, DHX30, MAP4, SMARCC1, CDC25A) 0.0620549626189713 12 0.189033646996956 0.931962738843749 760 0.505516989249426 5 5 0 -7.15152557953397 LTS-021 chr3 48200579 48229624 29046 * CDC25A 0.494 1 NA 1.25113360010172 77 0.533576967307446 5 5 0 -5.76441156969763 LTS-021 chr3 48229625 48348564 118940 * c(MIR4443, NME6, ZNF589, SPINK8, CAMP, CDC25A) 0.226725599835007 16 0.233132571369454 0.860339052128227 248 0.53847968802203 3 3 0 -6.74655817145677 LTS-021 chr3 48348565 48361162 12598 * SPINK8 0 1 NA 1.40536590161003 15 1.43114916197073 6 6 0 -5.76441022915794 LTS-021 chr3 48361163 49365127 1003965 * c(MIR711, MIR4271, MIR4793, ARIH2, USP19, WDR6, TREX1, COL7A1, CELSR3, KLHDC8B, LAMB2P1, NDUFAF3, FBXW12, CCDC36, IMPDH2, C3orf62, LAMB2, MIR191, TMEM89, MIR425, SHISA5, TMA7, IP6K2, NCKIPSD, PFKFB4, PLXNB1, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, SPINK8, ARIH2OS, C3orf84, CCDC71, SLC26A6, USP4, UQCRC1, SLC25A20, CCDC51, ATRIP, UCN2) 0.0330294001230612 42 0.140643016848165 0.937136556180117 3710 0.547148455512706 6 6 0 -7.63198347465984 LTS-021 chr3 49365128 49394834 29707 * c(GPX1, USP4) 0.454 1 NA 1.05300059469062 19 0.321542563097082 4 4 0 -5.76463708116351 LTS-021 chr3 49394835 49898273 503439 * c(BSN-AS2, MIR5193, TRAIP, DAG1, AMT, GPX1, GMPPB, APEH, AMIGO3, RHOA, CDHR4, FAM212A, MST1, RNF123, TCTA, UBA7, CAMKV, NICN1, BSN, IP6K1) 0.282448652721871 45 0.212828479335266 0.899123139746779 1701 0.557937245255029 3 3 0 -6.74195037739941 LTS-021 chr3 49898274 49898523 250 * CAMKV 0 1 NA 0.943609597773767 5 0.422996099272795 3 3 0 -5.76441015711991 LTS-021 chr3 49898524 50416501 517978 * c(RBM5-AS1, RBM6, RBM5, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, LSMEM2, NAT6, GNAI2, GNAT1, HYAL1, MST1R, ZMYND10, SEMA3F, IFRD2, SEMA3B, CAMKV, HYAL3, MON1A, HYAL2, CACNA2D2) 0.183785465270784 22 0.215330195452456 1.01024140644864 1770 0.53674093863946 4 4 0 -6.76305123533136 LTS-021 chr3 50416502 50417371 870 * CACNA2D2 0 1 NA 0.833020781066759 14 1.45383349258979 2 2 0 -5.76441098405948 LTS-021 chr3 50417372 53124640 2707269 * c(SNORD19B, LINC00696, PARP3, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, NISCH, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, GRM2, RBM15B, ITIH1, ITIH3, ITIH4, TMEM110, IQCF2, IQCF5, MUSTN1, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, C3orf18, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, GLT8D1, SEMA3G, PCBP4, RPL29, NT5DC2, NEK4, NA NA NA NA NA NA NA NA NA LTS-021 SNORD19, SNORD69, TNNC1, MAPKAPK3, MANF, WDR82, BAP1, ABHD14B, RRP9, RFT1, CACNA2D2, ACY1, DCAF1) 0.0523165217199937 82 0.15632660868116 0.947741323644968 5264 0.556000557257227 4 4 0 -7.50187848780862 LTS-021 NA NA NA NA LTS-021 chr3 53124641 53125429 789 * RFT1 0.39 1 NA 0.794079294611993 17 0.15686609126333 2 2 0 -5.76441237759107 LTS-021 chr3 53125430 54354431 1229002 * c(CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, SELENOK, TKT, CACNA1D, RFT1, ACTR8) 0.292369945431094 41 0.199964990838336 0.959828048859287 968 0.564332452614762 3 3 0 -6.75058495240363 LTS-021 chr3 54354432 54537596 183165 * CACNA2D3 0 1 NA 0.773554040246429 23 0.596386331270664 2 2 0 -5.76448325477549 LTS-021 chr3 54537597 56468994 1931398 * c(MIR3938, CACNA2D3-AS1, ERC2, CACNA2D3, LRTM1, ERC2-IT1, WNT5A, ESRG) 0.114461434177333 10 0.194534458529988 0.918814346392512 492 0.464473006601255 3 3 0 -7.05073018274813 LTS-021 chr3 56468995 56591178 122184 * ERC2 0.454 1 NA 0.984491960795366 7 0.249852242049462 3 3 0 -5.76706980389329 LTS-021 chr3 56591179 57306961 715783 * c(ARHGEF3-AS1, ASB14, FAM208A, APPL1, CCDC66, SPATA12, ARHGEF3, IL17RD, HESX1) 0.377076937773696 28 0.162239759054276 0.968923214286364 974 0.495805172026974 3 2 1 -6.74630979444002 LTS-021 chr3 57306962 57311974 5013 * c(ASB14, APPL1) 0 1 NA 0.657160718243508 23 0.432068583525307 1 1 0 -5.76443396518313 LTS-021 chr3 57311975 58095253 783279 * c(ASB14, DNAH12, PDE12, DENND6A, FLNB, ARF4, SLMAP) 0.141127254207166 18 0.218907246003738 0.958162252091431 1041 0.579529624899144 4 4 0 -6.84670819086067 LTS-021 chr3 58095254 58109162 13909 * FLNB 0.497 1 NA 1.21393005780203 45 0.474158007589892 5 5 0 -5.76443397721533 LTS-021 chr3 58109163 64554254 6445092 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, RPP14, FAM107A, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, DNASE1L3, C3orf67, KCTD6, FHIT, FLNB, LINC00698, PDHB, PXK, FEZF2, ADAMTS9, ABHD6, C3orf14, PTPRG, ATXN7, THOC7, ACOX2, CADPS, PSMD6) 0.333239057109078 49 0.193319896759214 0.96907528313657 2516 0.577358105808131 3 2 1 -6.75204376038027 LTS-021 chr3 64554255 64617162 62908 * ADAMTS9 0 1 NA 0.971013500729242 77 0.519893082756725 3 3 0 -5.76456980902177 LTS-021 chr3 64617163 68055642 3438480 * c(MIR4272, ADAMTS9-AS2, MAGI1-AS1, SLC25A26, LRIG1, FAM19A1, ADAMTS9, MIR548A2, KBTBD8, SUCLG2, MAGI1) 0.208878266739012 20 0.230873826329904 0.910588422925777 823 0.46899870359977 3 3 0 -6.77013462400487 LTS-021 chr3 68055643 68055719 77 * FAM19A1 NA 0 NA 0.091 1 NA NA NA NA NA LTS-021 chr3 68055720 69024826 969107 * c(FAM19A4, EOGT, FAM19A1) 0.0632255822383605 5 0.164574603143985 0.541176396877546 127 0.268987810959334 1 1 0 -8.29280838486099 LTS-021 chr3 69024827 72426663 3401837 * c(MIR1284, MIR3136, ARL6IP5, LINC00870, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, MITF, LMOD3, PROK2, TMF1, UBA3) 0.202812578141151 16 0.230083137148293 1.02888724954411 1385 0.512710517150177 4 4 0 -6.76669579513748 LTS-021 chr3 72426664 72799459 372796 * c(RYBP, SHQ1) 0.423 1 NA 1.17725953805 63 0.629124272892445 5 5 0 -5.76618304729771 LTS-021 chr3 72799460 73431763 632304 * c(PPP4R2, PDZRN3, EBLN2, SHQ1, GXYLT2) 0.374461526999349 20 0.141500567229661 1.03136199600309 326 0.679711625865669 4 2 2 -6.74427934195577 LTS-021 chr3 73431764 90250449 16818686 * c(ZNF717, MIR1324, MIR4795, MIR5688, CADM2-AS2, EPHA3, PDZRN3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, CNTN3, POU1F1, ZNF654, ROBO1, ROBO2, FAM86DP, CGGBP1) 0.321994573659708 251 0.137954371115816 0.84169766006051 2344 0.510937137118516 2 2 0 -6.92689155611 LTS-021 chr3 90250450 90283666 33217 * character(0) NA 0 NA 0.589394393953231 23 0.341724567220294 1 NA NA -5.76525515086023 LTS-021 chr3 93591838 93593119 1282 * PROS1 0.491 1 NA 0.551369056803413 25 0.17765309829365 1 1 0 -5.76486759468014 LTS-021 chr3 93593120 97806123 4213004 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, GABRR3, LINC00879, EPHA6, STX19, PROS1, NSUN3, OR5AC2, ARL6, MINA) 0.230614088099813 19 0.22274688648463 0.809739975705101 984 0.447070922990397 2 2 0 -6.80251632675716 LTS-021 chr3 97806124 98234703 428580 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.303949567996645 7 0.223576236065762 0.426451029384284 222 0.33631025788719 0 0 0 -6.79864069478284 LTS-021 chr3 98234704 98234817 114 * CLDND1 NA 0 NA 1.106 1 NA NA NA NA NA LTS-021 chr3 98234818 99860401 1625584 * c(MIR548G, MIR3921, ST3GAL6-AS1, ST3GAL6, FILIP1L, COL8A1, DCBLD2, CPOX, GPR15, CLDND1, CMSS1) 0.292017026608147 20 0.229397718292695 0.822377916372209 637 0.466248718375109 2 2 0 -6.74318493756938 LTS-021 chr3 99860402 99904480 44079 * CMSS1 0 1 NA 0.757814830013632 61 0.356715726159666 2 2 0 -5.7646785842158 LTS-021 chr3 99904481 100536284 631804 * c(TFG, ABI3BP, LNP1, TMEM45A, TBC1D23, NIT2, TMEM30CP, ADGRG7, TOMM70) 0.0573797897391263 11 0.182308779023641 0.890554856463272 730 0.455353993813666 5 5 0 -7.28107348203905 LTS-021 chr3 100536285 100558905 22621 * ABI3BP 0.397 1 NA 0.826376920661688 81 0.283806905426738 2 2 0 -5.76484275130563 LTS-021 chr3 100558906 101579158 1020253 * c(ZBTB11-AS1, FAM172BP, ABI3BP, ZBTB11, PDCL3P4, IMPG2, TRMT10C, PCNP, SENP7, RPL24, NFKBIZ, CEP97, NXPE3) 0.246198367205014 18 0.217996821947213 0.91349248430663 1112 0.464668980034902 3 3 0 -6.73728530867688 LTS-021 chr3 101579159 102171941 592783 * c(ZPLD1, LOC152225, NFKBIZ) 0 1 NA 1.03507660757555 31 1.10157570135077 4 4 0 -5.76524744152603 LTS-021 chr3 102171942 111565044 9393103 * c(LINC00882, PVRL3-AS1, CD96, HHLA2, ZPLD1, LINC00635, DPPA2, ALCAM, MYH15, PLCXD2, NECTIN3, MORC1, LINC00636, DUBR, FLJ22763, LINC01205, TRAT1, IFT57, DPPA4, BBX, KIAA1524, LINC00488, MIR548A3, ZBED2, RETNLB, CCDC54, CBLB, PHLDB2, CD47, GUCA1C, DZIP3) 0.112308872599014 53 0.202732870635213 0.874584463521534 2357 0.508341168645511 3 3 0 -7.14007101185437 LTS-021 chr3 111565045 111602770 37726 * c(PLCXD2, PHLDB2) 0.443 1 NA 1.19330380586569 9 0.283429346477115 5 5 0 -5.76491861071665 LTS-021 chr3 111602771 111785208 182438 * c(TAGLN3, TMPRSS7, ABHD10, PHLDB2) 0.379301532738359 17 0.121129306212532 0.854618426552414 423 0.391839184359554 2 1 1 -6.75741020745269 LTS-021 chr3 111785209 111840608 55400 * c(GCSAM, TMPRSS7, MIR567, C3orf52) 0 1 NA 0.963177378347821 123 0.387859834003213 3 3 0 -5.76455621092809 LTS-021 chr3 111840609 116164345 4323737 * c(ZBTB20-AS1, MIR4796, MIR4446, CFAP44-AS1, CD200R1, CCDC80, BTLA, SPICE1, DRD3, TIGIT, USF3, ZDHHC23, GCSAM, NEPRO, GAP43, ZBTB20, SLC9C1, GTPBP8, CD200R1L, LSAMP, CD200, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, CFAP44, CCDC191, ATG3, MIR568, ZNF80, C3orf52, QTRT2, NAA50, BOC) 0.111836370754826 41 0.201919049222763 0.862258018897253 3071 0.527748932503917 3 3 0 -7.1034231032864 LTS-021 chr3 116164346 116363133 198788 * LSAMP NA 0 NA 0.265 1 NA NA NA NA NA LTS-021 chr3 116363134 116728252 365119 * TUSC7 0 2 0 0.398381950959442 41 0.548732264005841 0 0 0 -Inf LTS-021 chr3 117715910 119308146 1592237 * c(IGSF11-AS1, ADPRH, IGSF11, C3orf30, TIMMDC1, TMEM39A, POGLUT1, ARHGAP31, UPK1B, B4GALT4, CD80) 0.164110086559769 14 0.226537773091735 0.836077901610266 974 0.504127524491114 3 3 0 -6.8870316686951 LTS-021 chr3 119308147 119378872 70726 * c(ADPRH, PLA1A, POPDC2) 0.346 1 NA 0.917787139920375 133 0.467641659368227 3 3 0 -5.76450888885071 LTS-021 chr3 119378873 119813282 434410 * c(COX17, GSK3B, POPDC2, NR1I2, MAATS1) 0.407979744521189 11 0.142937303483985 0.964020217041998 413 0.578798220375806 3 2 1 -6.81621728248624 LTS-021 chr3 119813283 120045586 232304 * c(LRRC58, GPR156) 0 1 NA 0.856806058736918 159 0.314210030832623 2 2 0 -5.77503595696733 LTS-021 chr3 120045587 121411238 1365652 * c(POLQ, FSTL1, LRRC58, GOLGB1, RABL3, GTF2E1, HCLS1, HGD, MIR198, NDUFB4, ARGFX, FBXO40, STXBP5L) 0.202594638215662 40 0.218019518062971 0.857484990907775 1362 0.502559708960169 3 3 0 -6.79974772980638 LTS-021 chr3 121411239 121435621 24383 * GOLGB1 0.389 1 NA 0.795340910394741 134 0.276349199550173 2 2 0 -5.76443955017114 LTS-021 chr3 121435622 121659202 223581 * c(GOLGB1, EAF2, SLC15A2, IQCB1) 0.395045505180788 15 0.119554211652328 0.884570868432521 300 0.467998887303463 2 1 1 -6.80015675883838 LTS-021 chr3 121659203 121660210 1008 * SLC15A2 0 1 NA 1.19404478296147 15 0.664927221223353 5 5 0 -5.76441252941855 LTS-021 chr3 121660211 122081804 421594 * c(CCDC58, CSTA, ILDR1, SLC15A2, CASR, CD86) 0.167096488707494 9 0.231715582365777 0.841879735805789 378 1.29285249937775 5 5 0 -6.7686792278171 LTS-021 chr3 122081805 122087135 5331 * CCDC58 NA 0 NA 1.257 1 NA NA NA NA NA LTS-021 chr3 122087136 122145615 58480 * c(CCDC58, FAM162A, KPNA1, WDR5B) 0.0613333995055747 5 0.150710981683486 1.05254268556383 277 0.550432467850316 14 14 0 -6.86698030752011 LTS-021 chr3 122145616 122288210 142595 * c(DTX3L, KPNA1, PARP9) 0.5 1 NA 1.07701313529664 267 0.513868001340213 4 4 0 -5.76447126472937 LTS-021 chr3 122288211 122513964 225754 * c(DTX3L, PARP15, PARP14, HSPBAP1, DIRC2) 0.377180363288104 18 0.150226419527935 0.965072773189026 478 0.887891123820522 4 2 2 -6.74589678022588 LTS-021 chr3 122513965 122629838 115874 * c(LOC100129550, SEMA5B, DIRC2) 0 1 NA 0.937393192635335 123 0.400947042289932 3 3 0 -5.76441100954425 LTS-021 chr3 122629839 123687776 1057938 * c(MYLK-AS1, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, CCDC14) 0.218217008627337 22 0.228687673362715 1.02253799649773 1138 0.504522503498363 4 4 0 -6.74454055115351 LTS-021 chr3 123687777 123699253 11477 * ROPN1 0.417 1 NA 0.389743807874641 76 0.300405369400935 0 0 0 -5.76766491791798 LTS-021 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-021 chr3 123699426 124238686 539261 * c(MIR5002, ROPN1, KALRN) 0 3 0 1.00149762170262 257 0.511134495826141 0 0 0 -Inf LTS-021 chr3 124238687 124303786 65100 * KALRN 0.385 1 NA 1.41499773020208 17 0.370121601639245 6 6 0 -5.76445044921314 LTS-021 chr3 124303787 124481760 177974 * c(UMPS, KALRN) 0.422391447525218 11 0.0534141622350545 0.962493363939601 328 0.409437862664085 4 2 2 -7.51847647344187 LTS-021 chr3 124481761 124567341 85581 * ITGB5 0 1 NA 1.00722226291773 85 0.447755978772602 3 3 0 -5.76568018314136 LTS-021 chr3 124567342 125690904 1123563 * c(FAM86JP, MIR548I1, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, MUC13, HEG1, ZNF148, SLC12A8, SNX4) 0.199545567001409 24 0.23237095140738 0.959819821141647 876 0.511826489170215 3 3 0 -6.77365499105806 LTS-021 chr3 125690905 125725475 34571 * c(ROPN1B, SLC41A3) 0.35190940468994 3 0.282929908870259 0.412096259515457 78 0.435189956840457 0 0 0 -6.73579835791717 LTS-021 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 0.989 1 NA NA NA NA NA LTS-021 chr3 125725550 126219627 494078 * c(ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, UROC1, KLF15, CFAP100, SLC41A3, ZXDC) 0.246486050894665 14 0.216823876467961 0.917050044212193 550 0.512806549020193 3 3 0 -6.73572463498486 LTS-021 chr3 126219628 126226650 7023 * UROC1 0 1 NA 0.805967675137819 31 0.280450336776138 2 2 0 -5.76444541795135 LTS-021 chr3 126226651 127706061 1479411 * c(MGLL, TXNRD3, TPRA1, UROC1, C3orf22, CHST13, KBTBD12, NUP210P1, MCM2, PODXL2, PLXNA1, TXNRD3NB, ABTB1, CHCHD6) 0.0648954286669727 18 0.176586256210253 0.941063631434211 1196 0.537125840487955 4 4 0 -7.26483949523802 LTS-021 chr3 127706062 127775499 69438 * c(KBTBD12, SEC61A1) 0.386 1 NA 0.793488060224085 45 0.387335514780276 2 2 0 -5.7644382356147 LTS-021 chr3 127775500 128627933 852434 * c(DNAJB8, LINC01565, GATA2, DNAJB8-AS1, ACAD9, SEC61A1, EEFSEC, RPN1, LOC653712, RAB7A, RUVBL1, LOC90246) 0.395792483855658 21 0.139640934099534 1.01462194697786 609 0.503975770334124 4 2 2 -6.78857525402893 LTS-021 chr3 128627934 128629655 1722 * c(ACAD9, KIAA1257) 0 1 NA 0.894135518435888 25 0.508958223563912 3 3 0 -5.76441957635797 LTS-021 chr3 128629656 129694822 1065167 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, GP9, ACAD9, RAB43, H1FX-AS1, IFT122, HMCES, ISY1, KIAA1257, RHO, SNORA7B, TRH, CNBP, EFCC1, MBD4, H1FX, EFCAB12) 0.179146774270656 22 0.227045149694945 1.03918869449267 1519 0.594933392677685 4 4 0 -6.76342661459728 LTS-021 chr3 129694823 130394698 699876 * c(COL6A6, COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.27256751721102 13 0.209219796092347 0.695930293648541 597 0.349721830741799 2 2 0 -6.79338073579827 LTS-021 chr3 130394699 131253262 858564 * c(MRPL3, NUDT16, COL6A6, NUDT16P1, ATP2C1, ASTE1, PIK3R4, LOC339874, SNORA58, NEK11) 0.113300444843193 11 0.204904767236791 0.916813501861593 735 0.408858779907387 4 4 0 -7.0034449439824 LTS-021 chr3 131253263 131404641 151379 * CPNE4 0.333 1 NA 0.879438672741394 71 0.348346172557721 3 3 0 -5.76759438206893 LTS-021 chr3 131404642 133524717 2120076 * c(NPHP3-ACAD11, MIR5704, TOPBP1, CPNE4, DNAJC13, NPHP3, NPHP3-AS1, ACKR4, ACPP, CDV3, SRPRB, TMEM108, TF, UBA5, ACAD11, BFSP2) 0.315017656740739 39 0.201495826634566 0.925095703621122 1478 0.500973090078191 3 2 1 -6.75713899928528 LTS-021 chr3 133524718 133543157 18440 * c(RAB6B, SRPRB) 0 1 NA 1.14227559008444 59 0.573277842844493 4 4 0 -5.76447859036213 LTS-021 chr3 133543158 133692624 149467 * c(RAB6B, SLCO2A1, C3orf36) 0.02813076640309 9 0.150333333333333 0.897650594325803 250 0.656250051226619 13 13 0 -7.09424847505756 LTS-021 chr3 133692625 133698280 5656 * SLCO2A1 0.493 1 NA 1.11626465718952 7 0.122604668597508 4 4 0 -5.76451998332385 LTS-021 chr3 133698281 134369716 671436 * c(MIR4788, ANAPC13, KY, AMOTL2, RYK, SLCO2A1, CEP63) 0.407469911614168 13 0.13267910004874 1.01507078071422 423 0.520183291893911 4 2 2 -6.8247690900076 LTS-021 chr3 134369717 134670524 300808 * c(EPHB1, KY) 0.069 1 NA 0.586258948502333 31 0.389969976787571 1 1 0 -5.77120415637079 LTS-021 chr3 134670525 136729673 2059149 * c(STAG1, EPHB1, NCK1, PCCB, IL20RB, MSL2, PPP2R3A, SLC35G2) 0.0358079268642669 12 0.129823277317026 0.897418041368974 924 0.523227890140604 4 4 0 -7.97796047401571 LTS-021 chr3 136729674 137484100 754427 * c(IL20RB, SOX14) 0.472 1 NA 0.65790199934154 35 0.368709780886008 1 1 0 -5.76962439440457 LTS-021 chr3 137484101 137881265 397165 * c(DZIP1L, A4GNT, DBR1, CLDN18, SOX14) 0.359755867017119 11 0.219058149191654 0.942783351502781 290 0.555189029446593 3 2 1 -6.73338091010301 LTS-021 chr3 137881266 137888949 7684 * DBR1 0 1 NA 1.01165134992991 23 0.353725709371479 3 3 0 -5.76461634058754 LTS-021 chr3 137888950 140784818 2895869 * c(PISRT1, MRAS, ARMC8, TRIM42, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, DBR1, PIK3CB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, ESYT3, SPSB4, COPB2) 0.133045804903675 39 0.209888502628806 0.953627989028902 1946 0.560943678332661 3 3 0 -6.94385649913203 LTS-021 chr3 140784819 140785175 357 * SPSB4 0.478 1 NA 1.15762151271478 9 0.367402367983659 4 4 0 -5.76441553893529 LTS-021 chr3 140785176 147130527 6345352 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, C3orf58, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, PAQR9, PLSCR5, ATP1B3, PLOD2, PLS1, PLSCR1, XRN1, ATR, PLSCR2, PLSCR4, RASA2, TFDP2, TRPC1, ZIC1, ZIC4, SPSB4, PXYLP1, CHST2, RNF7) 0.283617832152566 57 0.202325381873792 0.945092861223871 3090 0.559997164602262 3 3 0 -6.74227238911486 LTS-021 chr3 147130528 147131194 667 * ZIC1 NA 0 NA 0.651 1 NA NA NA NA NA LTS-021 chr3 147131195 148745467 1614273 * c(CPA3, CPB1, AGTR1, GYG1, ZIC1) 0.231966034549349 7 0.234177893308241 0.680100490748126 349 0.387512998593142 1 1 0 -6.89968566987368 LTS-021 chr3 148745468 148747918 2451 * HLTF NA 0 NA 1.698 1 NA NA NA NA NA LTS-021 chr3 148747919 150421419 1673501 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, ERICH6, CP, WWTR1, SERP1, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, LOC646903, HLTF, TM4SF4, EIF2A, HPS3, TSC22D2) 0.299497226519344 36 0.192957212133379 1.07215542769292 1486 0.864916037174697 4 3 1 -6.75338882318265 LTS-021 chr3 150421420 150644996 223577 * c(CLRN1-AS1, ERICH6, SIAH2, CLRN1) 0 1 NA 1.19611332919741 125 0.57046924917831 5 5 0 -5.7650739036164 LTS-021 chr3 150644997 151130946 485950 * c(MED12L, CLRN1-AS1, GPR171, P2RY13, GPR87, P2RY12, CLRN1, P2RY14) 0 9 0 0.976022650770682 526 0.654422627145049 0 0 0 -Inf LTS-021 chr3 151130947 151143447 12501 * MED12L 0.474 1 NA 1.66290169720734 19 0.816772051918601 8 8 0 -5.76441704179677 LTS-021 chr3 151143448 153992952 2849505 * c(MIR548H2, ARHGEF26-AS1, MIR5186, MED12L, AADAC, C3orf79, AADACP1, ARHGEF26, IGSF10, AADACL2, MBNL1-AS1, MBNL1, P2RY1, SUCNR1, RAP2B, TMEM14EP) 0.299326022557238 23 0.160067870980275 1.09709335129821 935 1.07656394500404 5 4 1 -6.7582133550086 LTS-021 chr3 153992953 153993160 208 * character(0) 0 1 NA 2.60539272892712 3 0.295954388377669 14 14 0 -5.7644102043526 LTS-021 chr3 153993161 155836177 1843017 * c(LOC100507537, DHX36, PLCH1, C3orf33, GPR149, MME, GMPS, SLC33A1) 0.0496196723233133 11 0.166207591993758 1.12316638299163 859 0.745577797653196 6 6 0 -7.1754185585303 LTS-021 chr3 155836178 155991348 155171 * c(KCNAB1-AS2, KCNAB1) 0.396 1 NA 1.02957981065221 25 0.469945429456088 4 4 0 -5.76586615871773 LTS-021 chr3 155991349 157318422 1327074 * c(TIPARP-AS1, LINC00881, KCNAB1-AS1, PQLC2L, TIPARP, LINC00880, LEKR1, CCNL1, PTX3, PA2G4P4, SSR3, LINC00886, KCNAB1, VEPH1) 0.25605798515341 32 0.18820445889185 1.11347455003583 838 0.764624478277269 4 4 0 -6.7483209085638 LTS-021 chr3 157318423 160213286 2894864 * c(MIR3919, IQCJ-SCHIP1, SMC4, PQLC2L, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, MLF1, RSRC1, LXN, IFT80, RARRES1, SHOX2, MFSD1, IQCJ, GFM1) 0.278511240132291 17 0.197506961902612 1.22473685903666 1380 0.677188894483964 5 4 1 -6.74716201107214 LTS-021 chr3 160213287 160216447 3161 * KPNA4 0 1 NA 1.27644994390189 53 0.65494389349657 5 5 0 -5.76441286956811 LTS-021 chr3 160216448 161062712 846265 * c(PPM1L, SPTSSB, KPNA4, NMD3, SCARNA7, ARL14, B3GALNT1) 0.0223613571329569 10 0.121747689916483 1.29018761684539 678 0.983235179548475 13 13 0 -7.214675793874 LTS-021 chr3 161062713 164783108 3720396 * c(LOC101243545, OTOL1, SPTSSB, LINC01192, SI) 0.0957305630432397 7 0.180915265617176 0.977324971625653 291 0.549934256549671 4 4 0 -7.1205339309844 LTS-021 chr3 164783109 164905688 122580 * c(SLITRK3, SI) 0.43 1 NA 1.1066486912372 49 0.559162041608253 4 4 0 -5.76445242782369 LTS-021 chr3 164905689 167189607 2283919 * c(SLITRK3, SERPINI2, BCHE, ZBBX) 0.305526509565167 10 0.178450864697011 0.8932025359974 310 0.461802221061106 3 3 0 -6.78894174710998 LTS-021 chr3 167189608 167422596 232989 * c(PDCD10, WDR49, SERPINI2) 0 1 NA 0.998286612957915 171 0.598753618297908 3 3 0 -5.76588532375745 LTS-021 chr3 167422597 167512574 89978 * c(PDCD10, SERPINI1) NA 0 NA 0.861494438382388 31 0.382279858640997 3 NA NA -5.76713201923431 LTS-021 chr3 167512575 167524930 12356 * SERPINI1 NA 0 NA 1.649 1 NA NA NA NA NA LTS-021 chr3 167524931 169854495 2329565 * c(LOC100128164, LRRC34, MECOM, GPR160, GOLIM4, LRRIQ4, SAMD7, SERPINI1, MYNN, LINC01330, MIR551B, TERC, SEC62, LRRC31, PHC3, ACTRT3, EGFEM1P) 0.102545345037522 25 0.150429252474377 1.45895210034147 1008 0.87072444914802 8 8 0 -6.83509373941182 LTS-021 chr3 169854496 169863158 8663 * PHC3 NA 0 NA 3.489 1 NA NA NA NA NA LTS-021 chr3 169863159 170077915 214757 * c(PRKCI, SKIL, PHC3) 0.0734394700946733 7 0.16371360009829 2.11836401741032 271 1.21784291623387 16 16 0 -6.74838766524259 LTS-021 chr3 170077916 172520787 2442872 * c(ECT2, RPL22L1, TNIK, GHSR, TMEM212, CLDN11, PLD1, EIF5A2, NCEH1, SLC7A14, FNDC3B, SKIL, SLC2A2, MIR569, TNFSF10) 0.158962312578046 38 0.182298742279534 1.44316314257902 1596 0.928315479894574 7 7 0 -6.74225783734885 LTS-021 chr3 172520788 172523507 2720 * ECT2 NA 0 NA 1.153 1 NA NA NA NA NA LTS-021 chr3 172523508 174003595 1480088 * c(ECT2, NLGN1, SPATA16) 0.0361961382554605 11 0.120303026486528 0.945793680646387 319 0.707729986741971 7 7 0 -7.74301759546702 LTS-021 chr3 174003596 174003736 141 * character(0) 0.489 1 NA 1.41940841313762 3 0.127672758775446 6 6 0 -5.76441129462061 LTS-021 chr3 174003737 179298999 5295263 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, NAALADL2, KCNMB3, ZNF639, PIK3CA, MFN1, GNB4, ZMAT3, TBL1XR1, ACTL6A) 0.349829860319337 27 0.159841107000607 0.97910470529685 1241 0.577676202124558 3 2 1 -6.75039440848171 LTS-021 chr3 179299000 179306816 7817 * c(MRPL47, ACTL6A) 0 1 NA 1.14241678381442 37 0.650457810594479 4 4 0 -5.76443279829184 LTS-021 chr3 179306817 181431400 2124584 * c(DNAJC19, TTC14, CCDC39, SOX2-OT, NDUFB5, PEX5L, MRPL47, SOX2, FXR1, USP13) 0.109128062706695 13 0.196712760786916 0.952934068406589 1049 0.801960289477218 4 4 0 -6.975860535398 LTS-021 chr3 181431401 182546017 1114617 * c(ATP11B, SOX2-OT, FLJ46066, SOX2) 0.367 1 NA 0.904055326005835 41 0.480796707965273 3 3 0 -5.76850492234679 LTS-021 chr3 182546018 185236964 2690947 * c(MIR1224, LINC00888, ABCC5, ABCC5-AS1, ALG3, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EHHADH, EIF4G1, LIPH, HTR3D, EPHB3, MCF2L2, ATP11B, VPS8, LAMP3, HTR3E, C3orf70, EHHADH-AS1, DCUN1D1, POLR2H, KLHL24, ABCF3, PARL, YEATS2, MCCC1, PSMD2, MAGEF1, SNORD66, THPO, MAP6D1, B3GNT5, CHRD, EIF2B5, KLHL6, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.275657979517683 116 0.21345370799607 0.998290966892058 4710 0.580674465132292 3 3 0 -6.75463944026511 LTS-021 chr3 185236965 185241887 4923 * LIPH 0 1 NA 1.71797126233383 9 0.643519230481887 8 8 0 -5.76441056777 LTS-021 chr3 185241888 186024734 782847 * c(IGF2BP2, DGKG, LIPH, ETV5, NMRAL1P1, SENP2, TRA2B, IGF2BP2-AS1) 0.0645145172370732 12 0.171557283480334 1.10541518560137 758 0.595386153965228 6 6 0 -7.06576868778787 LTS-021 chr3 186024735 186337713 312979 * c(CRYGS, DGKG, AHSG, LOC253573, DNAJB11, TBCCD1) 0.416 1 NA 0.977171100522993 197 0.571529632560778 3 3 0 -5.76533611577148 LTS-021 chr3 186337714 193096529 6758816 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, CLDN16, RPL39L, TMEM207, RTP1, MB21D2, CCDC50, PYDC2, AHSG, EIF4A2, FGF12, UTS2B, FETUB, TPRG1, HRG, LPP-AS2, RTP2, OSTN, ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, P3H2, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, ST6GAL1, SST, SNORA81, MGC2889, TP63, CLDN1, ADIPOQ) 0.334474993642105 97 0.188721790181598 0.949177141026506 3116 0.720372498091272 3 2 1 -6.74077930230713 LTS-021 chr3 193096530 193156266 59737 * ATP13A4 0 1 NA 0.828321289511141 50 0.379142891592204 2 2 0 -5.76511101760388 LTS-021 chr3 193156267 194309437 1153171 * c(DPPA2P3, LINC00887, TMEM44-AS1, OPA1-AS1, LRRC15, CPN2, GP5, HES1, LINC00884, OPA1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.0867621498874382 13 0.177869982766151 0.974937797627333 829 0.544291264918669 5 5 0 -7.10605494014604 LTS-021 chr3 194309438 194313832 4395 * c(TMEM44-AS1, TMEM44) 0.394 1 NA 1.41495426852949 9 0.806075058539836 6 6 0 -5.76441070539617 LTS-021 chr3 194313833 194790434 476602 * c(LOC100507391, FAM43A, XXYLT1, LSG1, TMEM44) 0.3687712793664 20 0.175893650584066 1.18135852196181 280 0.709652577198971 5 3 2 -6.73723662145085 LTS-021 chr3 194790435 194995469 205035 * c(XXYLT1-AS2, XXYLT1, ACAP2) 0 1 NA 1.12634418508994 73 0.34823998060873 4 4 0 -5.76538796753989 LTS-021 chr3 194995470 197765432 2769963 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, MIR5692C1, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, ACAP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, APOD, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, PPP1R2, RPL35A, BDH1, MIR570, TFRC, SDHAP2, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.248218132215179 115 0.200096504939722 0.993940549992048 3726 0.673348992426602 3 3 0 -6.74680348189869 LTS-021 chr3 197765433 197766147 715 * LMLN 0 1 NA 0.755751727930674 13 1.34553546675949 2 2 0 -5.76441048841944 LTS-021 chr3 197766148 197770321 4174 * LMLN 0.0475082291466054 9 0.147666666666667 1.07449145765472 79 0.670001058969162 20 20 0 -6.76285510659912 LTS-021 chr3 197770322 197770512 191 * LMLN NA 0 NA 1.32264346393058 5 0.133588173129211 6 NA NA -5.7644298857017 LTS-021 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.266 1 NA 0.62676126210315 13 0.278178599704099 1 1 0 -5.7644145329203 LTS-021 chr4 60336 36317992 36257657 * c(MIR943, LOC100129917, LOC100129931, LOC100130872, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, TMED11P, MIR4274, MIR4275, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4800, MIR4798, HTT-AS, MIR5091, MIR548AX, LINC01587, MFSD10, MAEA, PCGF3, SPON2, TACC3, SLC34A2, MXD4, CPLX1, SLC26A1, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, ARAP2, ADD1, CPEB2, NA NA NA NA NA NA NA NA NA LTS-021 EVC2, PACRGL, OTOP1, CRMP1, CTBP1, ADRA2C, ZNF595, LINC01085, JAKMIP1, FAM53A, TRMT44, DGKQ, DHX15, ADGRA3, ZBTB49, ZNF721, DRD5, TAPT1, TAPT1-AS1, EVC, FGFR3, SEL1L3, MAN2B2, LCORL, ZNF718, CCDC96, GAK, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, CRIPAK, LOC285484, DOK7, LINC00955, RNF212, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, GRK4, ZCCHC4, ANAPC4, HTT, HGFAC, HMX1, NOP14-AS1, NAT8L, IDUA, MSANTD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 FAM86EP, RBPJ, POLN, KCNIP4-IT1, SMIM20, USP17L6P, USP17L9P, LETM1, C4orf48, DTHD1, CFAP99, LRPAP1, MIR218-1, CPEB2-AS1, MSX1, MYL5, PCDH7, LAP3, SEPSECS, PDE6B, ATP5I, STX18, FGFRL1, CYTL1, SH3TC1, PIGG, DCAF16, LGI2, PPP2R2C, TBC1D19, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, STIM2, UVSSA, ZFYVE28, GBA3, NKX3-2, QDPR, RGS12, AFAP1, RNF4, S100P, NCAPG, ZNF876P, DEFB131, CLRN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 SH3BP2, LOC650293, ZNF732, SOD3, SCARNA22, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, WHSC1, NELFA, PSAPL1, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, MFSD7, TMEM175, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, NOP14, FAM193A, PROM1, CCKAR, LDB2, CCDC149, CTBP1-AS2, TMEM129, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 KIAA0232, WDR1, HS3ST1, FGFBP1) 0.178887137765518 487 0.152957740231915 0.662982306510705 16354 0.408542395847072 1 1 0 -7.63493439773377 LTS-021 NA NA NA NA LTS-021 chr4 36317993 37450981 1132989 * c(MIR4801, DTHD1, NWD2) 0.0937731307202572 6 0.174510744654878 0.432460564059559 231 0.228839257963574 0 0 0 -7.99888209785954 LTS-021 chr4 37450982 37450987 6 * NWD2 NA 0 NA 0.628 1 NA NA NA NA NA LTS-021 chr4 37450988 42089536 4638549 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, SLC30A9, PTTG2, LIAS, KLB, SMIM14, LIMCH1, TBC1D1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.142628974889154 75 0.161006309540067 0.672349698034811 3682 0.473929381669969 2 2 0 -7.54430011205589 LTS-021 chr4 42089537 47428153 5338617 * c(ATP8A1, SLC30A9, GNPDA2, SHISA3, COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, KCTD8, BEND4, GRXCR1, GUF1) 0.146045646284021 46 0.17366087225027 0.530507923250246 1681 0.293675083448833 0 0 0 -7.87716420889178 LTS-021 chr4 47428154 47428181 28 * GABRB1 NA 0 NA 0.763 1 NA NA NA NA NA LTS-021 chr4 47428182 49040147 1611966 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, SLC10A4, GABRB1, FRYL, ZAR1, OCIAD1, COMMD8, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.13024380463169 33 0.16391190815912 0.612141256707671 1705 0.355163018214134 1 1 0 -7.61458486912122 LTS-021 chr4 49040148 49064107 23960 * CWH43 NA 0 NA 0.40755676527114 19 0.0949317390956223 0 NA NA -5.80593370283455 LTS-021 chr4 52709193 52771442 62250 * DCUN1D4 0 1 NA 1.36778590462286 59 0.803862385034678 6 6 0 -5.76443822057775 LTS-021 chr4 52771443 57976260 5204818 * c(ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, DCUN1D4, IGFBP7-AS1, CHIC2, LRRC66, IGFBP7, KDR, KIT, RPL21P44, PDGFRA, POLR2B, PPAT, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, CLOCK, CEP135) 0.24638383837868 82 0.21132225534414 0.932848746351786 3339 0.52529183642823 3 3 0 -6.73570082609135 LTS-021 chr4 57976261 66509180 8532920 * c(EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134) 0.233561834652693 9 0.241011295263198 0.675805341520182 550 0.347190900501379 1 1 0 -7.03681365446168 LTS-021 chr4 66509181 66535248 26068 * EPHA5 NA 0 NA 1.92 1 NA NA NA NA NA LTS-021 chr4 66535249 68566792 2031544 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, UBA6) 0.156995585278599 7 0.23867581121082 1.07865376181435 449 0.484571121242196 4 4 0 -6.78424811324 LTS-021 chr4 68566793 68906164 339372 * c(GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.198093382901186 4 0.245487779736589 0.700567003114317 282 0.348188829234389 2 2 0 -6.85686673326709 LTS-021 chr4 68906165 68908146 1982 * UBA6-AS1 NA 0 NA 0.221363894353343 57 0.159752034121682 0 NA NA -5.79205940657981 LTS-021 chr4 68908147 68918917 10771 * c(TMPRSS11F, UBA6-AS1) NA 0 NA 0.771 1 NA NA NA NA NA LTS-021 chr4 68918918 71027268 2108351 * c(FTLP10, CSN1S2BP, UGT2B11, UGT2A1, TMPRSS11B, CSN1S1, CSN2, SULT1B1, CSN1S2AP, HTN1, HTN3, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, UGT2B28, UBA6-AS1, LOC550113, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17) 0.258191513713767 29 0.215480086058282 0.740413494199621 1109 0.570778977991566 2 2 0 -6.76923296295004 LTS-021 chr4 71027269 71062256 34988 * c(PRR27, ODAM) 0.46 1 NA 0.54385550967864 9 0.1945 0 0 0 -5.7732908882277 LTS-021 chr4 71062257 71396989 334733 * c(SMR3B, CSN3, FDCSP, SMR3A, AMTN, MUC7, ODAM, OPRPN, CABS1) 0.431316201623034 11 0.0362747094468659 0.561625808391853 275 0.449610110532484 0 0 0 -8.54942966939299 LTS-021 chr4 71396990 71467561 70572 * c(AMBN, AMTN) 0 1 NA 0.667487967976355 45 0.333388040965158 1 1 0 -5.7655230835058 LTS-021 chr4 71467562 71510772 43211 * c(ENAM, AMBN) NA 0 NA 0.767831891354537 132 0.504155936152136 2 NA NA -5.76446319641868 LTS-021 chr4 71510773 72425931 915159 * c(ENAM, DCK, RUFY3, GRSF1, JCHAIN, UTP3, SLC4A4, MOB1B) 0 9 0 0.997902316857483 735 0.563813875126112 0 0 0 -Inf LTS-021 chr4 72425932 73013188 587257 * c(NPFFR2, GC, SLC4A4) 0 1 NA 0.604250364291903 129 0.413811976464324 1 1 0 -5.7686627369774 LTS-021 chr4 73013189 73147916 134728 * c(NPFFR2, ADAMTS3) 0.48 1 NA 0.631844864608788 41 0.147230791947748 1 1 0 -5.76441265474542 LTS-021 chr4 73147917 73185245 37329 * ADAMTS3 NA 0 NA 0.721706937162888 94 0.330631235774854 2 NA NA -5.76588167309641 LTS-021 chr4 73185246 76808051 3622806 * c(PPBPP2, THAP6, C4orf26, RASSF6, AFM, AFP, EREG, ALB, EPGN, PARM1, RCHY1, ANKRD17, COX18, CXCL1, CXCL2, CXCL3, CXCL8, AREG, MTHFD2L, LOC441025, PF4, PF4V1, PPEF2, PPBP, CXCL6, CXCL5, BTC, LOC728040, USO1, CDKL2, ADAMTS3, G3BP2) 0.223932110579229 63 0.22279199242657 0.90758138970811 2204 0.562614832925975 3 3 0 -6.75588095734764 LTS-021 chr4 76808052 76856440 48389 * c(NAAA, PPEF2) 0.489 1 NA 1.02407641317219 89 0.542344093430789 4 4 0 -5.76481612644902 LTS-021 chr4 76856441 77033590 177150 * c(NAAA, CXCL10, ART3, CXCL9, SDAD1, CXCL11) 0.398207315491812 19 0.146997732408814 0.85423987156893 381 0.391240022440896 2 1 1 -6.78350237088958 LTS-021 chr4 77033591 77033872 282 * ART3 0 1 NA 0.731678412908502 7 0.710743440416609 2 2 0 -5.76441181892092 LTS-021 chr4 77033873 78639219 1605347 * c(FAM47E, MIR4450, FAM47E-STBD1, CXCL13, CCNI, CNOT6L, CCDC158, SOWAHB, ART3, NUP54, SEPT11, SHROOM3, STBD1, CCNG2, SCARB2) 0.198366727448863 41 0.218652185099487 0.9692916142718 1424 0.548029104954489 3 3 0 -6.78248846410632 LTS-021 chr4 78639220 78639357 138 * CNOT6L NA 0 NA 0.608 1 NA NA NA NA NA LTS-021 chr4 78639358 78641737 2380 * CNOT6L NA 0 NA 0.413575974854543 56 0.206458881633111 0 NA NA -5.76513604987878 LTS-021 chr4 78641738 83276578 4634841 * c(LINC01094, LINC01088, LINC00989, PCAT4, ANTXR2, PAQR3, RASGEF1B, FGF5, CNOT6L, C4orf22, GK2, ANXA3, HNRNPD, BMP2K, PRKG2, PRDM8, MRPL1, BMP3, FRAS1, NAA11) 0.185632800356992 57 0.219722237219682 0.825124045950191 2065 0.464212952397417 2 2 0 -6.92269854917757 LTS-021 chr4 83276579 83276590 12 * HNRNPD 0 1 NA 3.452 1 NA NA NA NA NA LTS-021 chr4 83276591 85738707 2462117 * c(THAP9-AS1, CDS1, HPSE, HELQ, LIN54, SEC31A, WDFY3, COQ2, HNRNPD, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, PLAC8, ENOPH1, MIR575, THAP9, SCD5, FAM175A, GPAT3, HNRNPDL) 0.183373738693216 37 0.227642339064012 0.994172407314539 1924 0.508799673167257 4 4 0 -6.80424263086927 LTS-021 chr4 85738708 85762385 23678 * WDFY3 0.482 1 NA 1.03548131362052 35 0.605154202169465 4 4 0 -5.76451935157678 LTS-021 chr4 85762386 88375674 2613289 * c(LOC100506746, MIR4451, MIR5705, C4orf36, WDFY3, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, HSD17B11, NUDT9, MAPK10, KLHL8, PTPN13, ARHGAP24) 0.341631766418876 28 0.159295119778307 0.965757077235992 1195 0.539917597982482 3 2 1 -6.74131385823562 LTS-021 chr4 88375675 88378968 3294 * NUDT9 NA 0 NA 0.521 1 NA NA NA NA NA LTS-021 chr4 88378969 90743331 2364363 * c(PYURF, FAM13A, PPM1K, TIGD2, DMP1, DSPP, NAP1L5, FAM13A-AS1, GPRIN3, IBSP, HERC5, PKD2, NUDT9, HERC6, MEPE, SNCA, SPP1, SPARCL1, HERC3, ABCG2) 0.381934624194575 26 0.148913216854133 0.885326398516846 1763 1.04851568289909 3 2 1 -6.7576523676988 LTS-021 chr4 90743332 90816194 72863 * c(MMRN1, SNCA-AS1, SNCA) 0 1 NA 0.713061408867091 27 0.537575884791005 2 2 0 -5.76582763545419 LTS-021 chr4 90816195 95561412 4745218 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, SMARCAD1) 0.202937220804985 26 0.204653857863617 0.798800401634037 903 0.446954356914559 2 2 0 -6.8693718886804 LTS-021 chr4 95561413 95561459 47 * PDLIM5 0.333 1 NA 0.475 1 NA NA NA NA NA LTS-021 chr4 95561460 100063974 4502515 * c(MIR3684, LOC100507053, TSPAN5, STPG2-AS1, PDLIM5, ADH4, ADH5, EIF4E, METAP1, STPG2, PDHA2, RAP1GDS1, BMPR1B, UNC5C) 0.13109100439965 28 0.150248295379849 0.675164978201872 1341 0.433090981995173 2 2 0 -7.72329385865603 LTS-021 chr4 100063975 100064250 276 * c(LOC100507053, ADH4) NA 0 NA 0.516 1 NA NA NA NA NA LTS-021 chr4 100064251 100462296 398046 * c(LOC100507053, ADH1A, ADH1B, ADH1C, ADH4, ADH6, ADH7, PCNAP1, C4orf17) 0.312316611282289 16 0.0693559658573075 0.47438703821551 438 0.328715662347125 0 0 0 -6.98291577243711 LTS-021 chr4 100462297 119388948 18926652 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, ENPEP, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, ANK2, H2AFZ, HADH, CFI, LRIT3, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RPL34, NEUROG2, SLC39A8, NA NA NA NA NA NA NA NA NA LTS-021 LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK) 0.164681639848876 165 0.161932442137774 0.634195406108087 7599 0.393745958926335 1 1 0 -7.38718235214222 LTS-021 NA NA NA NA LTS-021 chr4 119388949 119399800 10852 * character(0) NA 0 NA 0.342 1 NA NA NA NA NA LTS-021 chr4 119399801 119607828 208028 * c(METTL14, CEP170P1) 0.271 1 NA 0.29591998174147 182 0.204451362287003 0 0 0 -6.38846147247132 LTS-021 chr4 119607829 119609021 1193 * METTL14 NA 0 NA 0.907 1 NA NA NA NA NA LTS-021 chr4 119609022 120486548 877527 * c(SYNPO2, FABP2, LINC01061, C4orf3, MYOZ2, USP53, METTL14, LOC645513, PDE5A, SEC24D) 0.258377032526463 22 0.124910253496546 0.668884006810524 936 0.348894323103649 2 2 0 -6.9090851447214 LTS-021 chr4 120486549 126413661 5927113 * c(PP12613, SPRY1, PRDM5, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, FGF2, LINC01091, ANXA5, IL2, MAD2L1, EXOSC9, BBS7, ANKRD50, IL21, TRPC3, CETN4P, NDNF, FAT4, TNIP3, QRFPR, KIAA1109, PDE5A, CCNA2) 0.185685115857244 63 0.150424791917933 0.550666521567677 2502 0.403668310033048 1 1 0 -7.71970954797949 LTS-021 chr4 126413662 138453470 12039809 * c(MIR2054, PGRMC2, PLK4, SCLT1, C4orf33, PABPC4L, HSPA4L, MFSD8, INTU, PCDH18, LARP1B, PCDH10, FAT4, JADE1, ABHD18, SLC25A31) 0.20255918706226 16 0.193409313374512 0.654574530299711 1647 0.348283253629994 1 1 0 -7.10524207621751 LTS-021 chr4 138453471 138453532 62 * PCDH18 NA 0 NA 0.998 1 NA NA NA NA NA LTS-021 chr4 138453533 139937071 1483539 * c(LINC00499, SLC7A11, NOCT, PCDH18, SLC7A11-AS1, LINC00616) 0.267617198124317 5 0.255938078448675 0.880479369764812 225 0.393653108612945 3 3 0 -6.75714928455895 LTS-021 chr4 139937072 140262137 325066 * c(ELF2, NOCT, NDUFC1, NAA15, MGARP) 0 1 NA 0.896805432941679 203 0.569790556007606 3 3 0 -5.76566376812734 LTS-021 chr4 140262138 144477998 4215861 * c(SCOC-AS1, CLGN, MGAT4D, TBC1D9, GAB1, ELMOD2, ZNF330, IL15, MGST2, MAML3, RNF150, SCOC, TNRC18P1, UCP1, NAA15, SETD7, RAB33B, USP38, SMARCA5, INPP4B) 0.195920231854848 68 0.222503626747331 0.91976596686921 2366 0.51580274713844 3 3 0 -6.78520806325265 LTS-021 chr4 144477999 146025738 1547740 * c(ANAPC10, FREM3, GYPA, GYPB, GYPE, GUSBP5, ABCE1, HHIP, HHIP-AS1, SMARCA5) 0.223396682385244 19 0.218834753005109 0.75040323224075 614 0.420904458295596 2 2 0 -6.81686345292533 LTS-021 chr4 146025739 146026657 919 * ABCE1 NA 0 NA 1.543 1 NA NA NA NA NA LTS-021 chr4 146026658 146046333 19676 * ABCE1 NA 0 NA 1.51165304147671 69 0.50769639256619 7 NA NA -5.76444106688278 LTS-021 chr4 146046334 146048544 2211 * ABCE1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-021 chr4 146048545 146058882 10338 * c(OTUD4, ABCE1) 0.388 1 NA 0.570800076414147 129 0.301191345330403 1 1 0 -5.76512732966201 LTS-021 chr4 146058883 154624374 8565492 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, DKFZP434I0714, POU4F2, OTUD4, FBXW7, TMEM184C, RPS3A, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.174696177748159 54 0.22000757959753 0.94668049402617 3554 0.513180215694632 3 3 0 -6.82176381312747 LTS-021 chr4 154624375 155219524 595150 * c(RNF175, DCHS2, SFRP2, TLR2) 0.0621762520964467 4 0.189 0.697327991137624 260 0.417645060760386 3 3 0 -7.4989945882117 LTS-021 chr4 155219525 155312411 92887 * DCHS2 0.447 1 NA 0.737032006827702 133 0.294577253658876 2 2 0 -5.76701894474222 LTS-021 chr4 155312412 155488821 176410 * c(FGB, PLRG1, DCHS2) 0.38183516780671 9 0.149336030481595 0.869842650650276 207 0.368730788897944 2 1 1 -6.75695927594732 LTS-021 chr4 155488822 155490357 1536 * FGB 0 1 NA 0.718081109692044 11 1.10396506861733 2 2 0 -5.76441622814947 LTS-021 chr4 155490358 156845906 1355549 * c(CTSO, RBM46, FGA, FGB, FGG, GUCY1A3, GUCY1B3, NPY2R, ASIC5, TDO2, MAP9, LRAT) 0.0868522528946613 21 0.189730372596783 0.722174636138314 999 0.437222356229462 2 2 0 -7.43892719368776 LTS-021 chr4 156845907 156846048 142 * CTSO 0 1 NA 1.21283999965639 3 0.916436759047417 5 5 0 -5.76441020402672 LTS-021 chr4 156846049 157555582 709534 * CTSO 0.453 1 NA 1.03310475076094 63 0.53305329581594 4 4 0 -5.76899814494547 LTS-021 chr4 157555583 159092605 1537023 * c(GLRB, GRIA2, LOC340017, FAM198B, PDGFC) 0.438650976172957 11 0.0404360325362507 0.963179552856262 473 0.789597760934524 4 2 2 -8.52778663173896 LTS-021 chr4 159092606 159589337 496732 * c(C4orf46, FAM198B, TMEM144, RXFP1) 0 1 NA 0.864954781164129 303 0.433230342458227 3 3 0 -5.77502907487993 LTS-021 chr4 159589338 160280498 691161 * c(MIR3688-1, MIR3688-2, C4orf45, C4orf46, ETFDH, PPID, FNIP2, RAPGEF2) 0.147048414218321 9 0.195968180523721 0.927998034707944 659 0.532084734720368 4 4 0 -6.86855383880374 LTS-021 chr4 160280499 169013905 8733407 * c(LINC01207, APELA, ANXA10, KLHL2, CPE, FAM218A, TRIM60, TMEM192, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, SPOCK3, MARCH1, TMA16, FSTL5, MSMO1, MIR578, TLL1, TKTL2, NAF1, RAPGEF2) 0.271312521763922 20 0.189949577797012 0.783252441918686 1415 0.495157214536779 2 2 0 -6.74698789365296 LTS-021 chr4 169013906 169048794 34889 * ANXA10 NA 0 NA 1.98 1 NA NA NA NA NA LTS-021 chr4 169048795 170983165 1934371 * c(LOC100506085, ANXA10, CLCN3, PALLD, NEK1, AADAT, HPF1, DDX60, SH3RF1, CBR4, DDX60L, MFAP3L) 0.194834632258462 36 0.218881478401672 0.984481491477988 1537 0.614136033586205 4 4 0 -6.77838215658484 LTS-021 chr4 170983166 170985766 2601 * AADAT NA 0 NA 0.362 1 NA NA NA NA NA LTS-021 chr4 170985767 183838027 12852261 * c(MIR1305, MIR4276, LOC100506122, ADAM29, SCRG1, WDR17, SPATA4, ASB5, DCTD, AGA, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, GALNTL6, AADAT, GALNT7, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, HAND2-AS1, GLRA3, CEP44, SAP30, LOC90768, HAND2) 0.224837761748991 46 0.217463795642996 0.762487699146877 2172 0.513707992790792 2 2 0 -6.82992578654115 LTS-021 chr4 183838028 184432016 593989 * c(CLDN24, WWC2-AS2, DCTD, ING2, LOC389247, FAM92A1P2, CLDN22, CDKN2AIP, WWC2) 0.0955484428717596 10 0.164100104949523 1.13314525234238 432 0.695511110308837 7 7 0 -6.90541572550353 LTS-021 chr4 184432017 184432115 99 * ING2 NA 0 NA 0.861 1 NA NA NA NA NA LTS-021 chr4 184432116 184562442 130327 * c(RWDD4, ING2) 0.456051530232692 3 0.0365011415346607 0.508470541626787 39 0.311590261767068 0 0 0 -9.41569223245364 LTS-021 chr4 184562443 189068752 4506310 * c(MIR3945, LINC01093, ZFP42, ENPP6, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, SLC25A4, LOC339975, TRIML1, ANKRD37, IRF2, KLKB1, HELT, C4orf47, MTNR1A, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, FLJ38576, TLR3, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.234781504086091 81 0.181281171861848 1.2016399156431 2910 0.659229305736652 5 5 0 -6.7620496451887 LTS-021 chr4 189660530 190945944 1285415 * FRG1 0.276237077928803 8 0.0624705644969807 0.813453984611634 152 0.641976396603292 3 3 0 -6.8152018656567 LTS-021 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.918688802542445 21 2.1589473702754 3 NA NA -5.76441226964137 LTS-021 chr5 140347 145007 4661 * PLEKHG4B 0 1 NA 1.70072054803227 29 1.42745938318412 8 8 0 -5.76441014190292 LTS-021 chr5 145008 677969 532962 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.23321801798225 30 0.133522033138105 1.40776206048467 1090 0.885329010694962 8 7 1 -6.74835348556801 LTS-021 chr5 677970 848703 170734 * c(TPPP, ZDHHC11) 0.200922410433709 11 0.183465032586099 0.849354255475534 181 0.694711657883869 4 4 0 -6.75802666588371 LTS-021 chr5 848704 10266277 9417574 * c(SNORD123, MIR4277, MIR4278, MIR4458HG, SNHG18, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4636, MIR4635, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, C5orf38, IRX2, ADAMTS16, CCT5, ICE1, LINC01018, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, NSUN2, MRPL36, SLC6A3, BRD9, SRD5A1, TERT, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, NA NA NA NA NA NA NA NA NA LTS-021 CLPTM1L, MED10, NKD2, SEMA5A, TRIP13) 0.199497318682687 90 0.159316267322919 1.32093174574608 3381 0.799348072504754 5 5 0 -6.76382237123954 LTS-021 NA NA NA NA LTS-021 chr5 10266278 11023148 756871 * c(ROPN1L-AS1, MARCH6, CMBL, CTNND2, DAP, CCT5, ANKRD33B, ROPN1L) 0.147738166555849 6 0.177479764104719 1.64768944859436 455 1.05609127430267 8 8 0 -6.733554614399 LTS-021 chr5 11023149 11082727 59579 * CTNND2 NA 0 NA 0.965 1 NA NA NA NA NA LTS-021 chr5 11082728 13944681 2861954 * c(CTNND2, DNAH5, LINC01194) 0.208149905784268 31 0.194174835307428 1.01272284390084 592 0.573250155583636 4 4 0 -6.76785083721772 LTS-021 chr5 13944682 14143929 199248 * TRIO NA 0 NA 1.5 1 NA NA NA NA NA LTS-021 chr5 14143930 14871904 727975 * c(LOC100130744, MIR4637, FAM105A, ANKH, TRIO, OTULIN) 0.129045016667996 9 0.20412339677536 1.29662407013492 916 0.599692815536428 6 6 0 -6.77715405946873 LTS-021 chr5 15500513 19473290 3972778 * c(CDH18, BASP1, FBXL7, LOC285696, LOC401177, MARCH11, MYO10, FAM134B, ZNF622) 0.189675762141798 6 0.237135755774338 0.981058381965695 640 0.503152191661127 3 3 0 -6.80250475573747 LTS-021 chr5 19473291 19473297 7 * CDH18 NA 0 NA 0.683 1 NA NA NA NA NA LTS-021 chr5 19473298 31324472 11851175 * c(CDH6, CDH9, CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.127060272321142 8 0.196663554253015 0.648253687011836 592 0.373480726177639 1 1 0 -7.41405326642312 LTS-021 chr5 31324473 31526226 201754 * c(CDH6, DROSHA) 0 2 0 0.958881327043254 258 0.434114254443202 0 0 0 -Inf LTS-021 chr5 31526227 31532685 6459 * c(DROSHA, C5orf22) 0.476 1 NA 1.07125638926936 35 0.458769779872617 4 4 0 -5.76441684756285 LTS-021 chr5 31532686 34824555 3291870 * c(MIR4279, SUB1, C1QTNF3, PDZD2, AMACR, RAI14, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, GOLPH3, TARS, ADAMTS12) 0.297771434718234 53 0.202738069843124 0.948389820226712 1935 0.549315793975998 3 3 0 -6.75529573329041 LTS-021 chr5 34824556 34867203 42648 * c(TTC23L, RAI14) 0 1 NA 0.880689216782363 87 0.451882476447933 3 3 0 -5.76492048693546 LTS-021 chr5 34867204 34897025 29822 * TTC23L NA 0 NA 0.965920250948064 19 0.813018079541174 3 NA NA -5.76443220809812 LTS-021 chr5 34897026 34902542 5517 * TTC23L NA 0 NA 2.288 1 NA NA NA NA NA LTS-021 chr5 34902543 34956365 53823 * c(DNAJC21, BRIX1, RAD1) 0.094039761380148 6 0.213943684178804 1.36208641555803 256 0.745894866139137 12 12 0 -6.75361688882573 LTS-021 chr5 34956366 35086315 129950 * c(DNAJC21, PRLR, AGXT2) 0.0397679657331072 9 0.163666666666667 0.770577705309451 397 0.409803693378716 8 8 0 -7.27026494689786 LTS-021 chr5 35086316 35641582 555267 * c(PRLR, SPEF2) 0.494 1 NA 0.833739273691271 25 0.228133184784678 2 2 0 -5.78701913720337 LTS-021 chr5 35641583 35955682 314100 * c(UGT3A1, CAPSL, IL7R, SPEF2) 0.350378933923044 29 0.17453175216079 0.745472888243029 596 0.400939271654016 2 1 1 -6.73724921309323 LTS-021 chr5 35955683 35962971 7289 * UGT3A1 0 1 NA 0.705873233643937 15 0.901864988311919 2 2 0 -5.76447162107341 LTS-021 chr5 35962972 36105337 142366 * c(UGT3A1, UGT3A2, LMBRD2) 0 2 0 0.726325364306443 207 0.361063477146799 0 0 0 -Inf LTS-021 chr5 36105338 36108566 3229 * LMBRD2 NA 0 NA 1.546 1 NA NA NA NA NA LTS-021 chr5 36108567 38480624 2372058 * c(EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NADK2, RANBP3L, NIPBL, GDNF, LIFR, WDR70, NIPBL-AS1, SKP2, SLC1A3, C5orf42, MIR580, LMBRD2, NUP155) 0.1278730478215 20 0.206785014218302 0.94947496220389 1787 0.55889281834193 4 4 0 -6.95420851931955 LTS-021 chr5 38480625 38481335 711 * LIFR 0.451 1 NA 0.858953470427435 15 0.156366632660308 3 3 0 -5.76454755120537 LTS-021 chr5 38481336 39202801 721466 * c(MIR3650, RICTOR, FYB, LIFR, OSMR) 0.411184761739261 8 0.0447019894092294 0.991553911852623 722 0.610243861931573 4 2 2 -7.50339728023661 LTS-021 chr5 39202802 39394493 191692 * c(DAB2, FYB, C9) 0.402869350343786 7 0.180846554267634 0.723907302509461 191 0.354833920376669 2 1 1 -6.77660046145206 LTS-021 chr5 39394494 40715482 1320989 * c(DAB2, TTC33, PTGER4) 0 1 NA 0.731118053551775 91 0.381587699814306 2 2 0 -5.79234427802394 LTS-021 chr5 40715483 45396737 4681255 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, NIM1K, FGF10, NNT, TTC33, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, HCN1, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, ZNF131, CARD6) 0.230703621458145 50 0.224468788794472 0.866437688668604 2548 0.65347328461637 3 3 0 -6.78466345729773 LTS-021 chr5 45396738 45696278 299541 * HCN1 NA 0 NA 0.851186413886339 27 0.364795766925757 2 NA NA -5.77309556900806 LTS-021 chr5 49692017 49693770 1754 * EMB 0 1 NA 0.462097945407473 33 0.323297176594444 0 0 0 -5.7644233988065 LTS-021 chr5 49693771 54462383 4768613 * c(FST, ESM1, SNX18, EMB, CDC20B, LOC257396, GZMA, GZMK, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, GPX8, PELO, ARL15, LOC642366, MIR581, PARP8, HSPB3) 0.318172614550663 47 0.19947625455981 0.767498722038428 1635 0.464913954435807 2 2 0 -6.74507814523453 LTS-021 chr5 54462384 54720335 257952 * c(MIR449C, CCNO, CDC20B, SKIV2L2, MCIDAS, GPX8, DHX29, MIR449A, MIR449B) 0.258795514924083 12 0.207704973605848 1.09392644307287 430 0.505410201610977 3 3 0 -6.74718337812575 LTS-021 chr5 54720336 54720363 28 * SKIV2L2 NA 0 NA 0.93 1 NA NA NA NA NA LTS-021 chr5 54720364 55237708 517345 * c(MIR5687, IL31RA, SLC38A9, SKIV2L2, IL6ST, RNF138P1, DDX4, PLPP1) 0.298191981869055 9 0.19860954156334 0.809431083182516 533 0.44125095005288 2 2 0 -6.73451666184069 LTS-021 chr5 55237709 55238421 713 * IL6ST NA 0 NA 1.139 1 NA NA NA NA NA LTS-021 chr5 55238422 60448903 5210482 * c(PLK2, RAB3C, ERCC8, SETD9, MIER3, GAPT, PART1, ACTBL2, IL6ST, MAP3K1, FLJ31104, PDE4D, DEPDC1B, GPBP1, ANKRD55, ELOVL7, NDUFAF2) 0.224283745230656 50 0.185830843642759 1.11038494253198 1849 0.57480989418706 4 4 0 -6.73577728322126 LTS-021 chr5 60448904 60453562 4659 * SMIM15 NA 0 NA 2.841 1 NA NA NA NA NA LTS-021 chr5 60453563 61785240 1331678 * c(DIMT1, C5orf64, KIF2A, IPO11, ZSWIM6, SMIM15) 0.277852868925583 14 0.139633429040092 1.30636533306006 542 0.703261335858752 6 5 1 -6.74083006765827 LTS-021 chr5 61785241 61785986 746 * IPO11 0 1 NA 2.76892156032013 7 0.859831074217765 15 15 0 -5.76441013966315 LTS-021 chr5 61785987 66195793 4409807 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CWC27, ADAMTS6, SREK1, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, IPO11, SGTB, ERBIN, NLN, CENPK, TRAPPC13) 0.081270040662524 26 0.157755585052906 1.25211298448395 2050 0.703758767841603 6 6 0 -7.02387861694767 LTS-021 chr5 66195794 66195805 12 * MAST4 NA 0 NA 1.862 1 NA NA NA NA NA LTS-021 chr5 66195806 66198472 2667 * MAST4 NA 0 NA 0.57 1 NA NA NA NA NA LTS-021 chr5 66198473 66226652 28180 * MAST4 0.407 1 NA 0.815429441990699 15 0.309430506083738 2 2 0 -5.76465627730782 LTS-021 chr5 66226653 67576279 1349627 * c(MAST4, CD180, PIK3R1) 0.40975029228032 3 0.0289194283023253 0.937114736002026 435 0.425099511069043 4 2 2 -8.34215703390553 LTS-021 chr5 67576280 68809945 1233666 * c(OCLN, CDK7, MARVELD2, CCDC125, PIK3R1, RAD17, SLC30A5, CENPH, TAF9, CCNB1, MRPS36) 0.188108608519538 17 0.151997532874715 0.712669815211678 926 0.46054627547189 2 2 0 -7.07529573240086 LTS-021 chr5 68809946 68830513 20568 * OCLN NA 0 NA 0.011 1 NA NA NA NA NA LTS-021 chr5 68830514 70388996 1558483 * c(GUSBP9, NA, OCLN, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.332332052502588 172 0.358752671811882 0 NA NA -6.60711857091307 LTS-021 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 1.241 1 NA NA NA NA NA LTS-021 chr5 70751404 73207509 2456106 * c(MIR4804, MIR4803, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, TNPO1, MAP1B, BDP1, ANKRA2, MCCC2, ARHGEF28, BTF3, PTCD2, UTP15, CARTPT) 0.176771341223238 36 0.153230242259344 0.704395062816094 1798 0.422356567648001 2 2 0 -7.19531298855289 LTS-021 chr5 73207510 73931246 723737 * c(ARHGEF28, ENC1) 0.151772920959645 5 0.136327546739461 0.588708206538553 57 0.485938917538972 3 3 0 -7.4603550047515 LTS-021 chr5 73931247 74059453 128207 * c(HEXB, GFM2, ENC1) 0 1 NA 0.630015823324761 189 0.474972787455866 1 1 0 -5.76441485578591 LTS-021 chr5 74059454 75699262 1639809 * c(COL4A3BP, NSA2, IQGAP2, POC5, SV2C, ANKRD31, FAM169A, HMGCR, GCNT4, POLK, ANKDD1B, GFM2) 0 14 0 0.621529808376484 1217 0.401045856820392 0 0 0 -Inf LTS-021 chr5 75699263 75858215 158953 * IQGAP2 0.284 1 NA 0.724187321843586 17 0.274537445211995 2 2 0 -5.77276805881374 LTS-021 chr5 75858216 79172136 3313921 * c(NCRUPAR, LHFPL2, IQGAP2, JMY, CRHBP, PAPD4, S100Z, CMYA5, F2R, F2RL1, F2RL2, OTP, BHMT2, DMGDH, ARSB, AGGF1, WDR41, BHMT, SNORA47, TBCA, ZBED3-AS1, ZBED3, AP3B1, PDE8B, HOMER1, SCAMP1) 0.207837323128558 75 0.134563045942537 0.621180366309064 2595 0.473660687263919 1 1 0 -7.28966908397203 LTS-021 chr5 79172137 79276165 104029 * MTX3 0 1 NA 0.895264950452961 13 0.568910891585055 3 3 0 -5.76484348378408 LTS-021 chr5 79276166 90664942 11388777 * c(CKMT2-AS1, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR3977, EDIL3, POLR3G, CETN3, CKMT2, LYSMD3, ACOT12, COX7C, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, FAM151B, DHFR, SSBP2, SERINC5, RNU5E-1, NBPF22P, ANKRD34B, MTX3, MIR9-2, MEF2C, CRSP8P, MSH3, ARRDC3, RASA1, RASGRF2, RPS23, LOC644936, LINC00461, SCARNA18, THBS4, XRCC4, ATG10, ADGRV1, ZCCHC9, SPZ1, CCNH, ATP6AP1L, ZFYVE16) 0.136617212580396 84 0.160383284819024 0.61161222291952 4134 0.385385398953531 1 1 0 -7.64433021485015 LTS-021 chr5 90664943 106716383 16051441 * c(ARRDC3-AS1, LOC100133050, LOC100289230, MIR2277, CHD1, SLCO6A1, POU5F2, ARSK, FAM81B, LIX1, EFNA5, LINC01554, RHOBTB3, ELL2, PPIP5K2, GLRX, KIAA0825, GPR150, RGMB, RFESD, FAM174A, SLCO4C1, LNPEP, NR2F1-AS1, RGMB-AS1, PAM, PCSK1, ERAP1, GIN1, RIOK2, ARRDC3, ERAP2, MIR583, NR2F1, ST8SIA4, MCTP1, CAST, NUDT12, SPATA9, FAM172A, SLF1, C5orf30, RAB9BP1, TTC37) 0.0956748492525862 104 0.118557635750601 0.883779353125247 4399 0.512737707985009 3 3 0 -7.83128388917357 LTS-021 chr5 106716384 110827305 4110922 * c(LOC100289673, LINC01023, WDR36, EFNA5, FER, MAN2A1, TMEM232, FBXL17, CAMK4, TSLP, SLC25A46, PJA2) 0.111911732910516 41 0.166694477354494 0.61571900552907 1503 0.384597930717406 1 1 0 -7.72290740969447 LTS-021 chr5 110827306 110836285 8980 * STARD4 0.212 1 NA 0.689013008855507 159 0.290626528517441 1 1 0 -5.76487958593152 LTS-021 chr5 110836286 111545670 709385 * c(STARD4-AS1, NREP-AS1, EPB41L4A-AS1, STARD4, EPB41L4A, SNORA13, NREP) 0.322145464751306 19 0.0845888577402554 0.576248244978692 265 0.323849075495449 1 1 0 -6.80523762860868 LTS-021 chr5 111545671 111595052 49382 * EPB41L4A 0.208 1 NA 0.734904718812913 23 0.239016628326568 2 2 0 -5.76671228404358 LTS-021 chr5 111595053 122911612 11316560 * c(TMED7-TICAM2, LOC100505841, CDO1, AP3S1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LVRN, TNFAIP8, DTWD2, SNX24, APC, HSD17B4, FAM170A, TICAM2, KCNN2, LOX, MCC, TMED7, PRR16, COMMD10, PGGT1B, EPB41L4A-AS2, PPIC, TRIM36, FEM1C, SEMA6A, EPB41L4A, ARL14EPL, YTHDC2, SNX2, SRP19, LINC00992, REEP5, TSSK1B, ATG12, PRDM6, FTMT, SNCAIP) 0.161295796580275 78 0.142734084860691 0.640089848943632 4141 0.353450682028896 1 1 0 -7.58586706258607 LTS-021 chr5 122911613 122911641 29 * CSNK1G3 0 1 NA 1.844 1 NA NA NA NA NA LTS-021 chr5 122911642 128300994 5389353 * c(MARCH3, PRRC1, CSNK1G3, FBN2, TEX43, LMNB1, C5orf63, ALDH7A1, PHAX, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, MEGF10) 0.162263634606518 32 0.105519753348718 0.951129586147849 1987 0.564634313114319 4 4 0 -7.13476097487447 LTS-021 chr5 128300995 128301211 217 * SLC27A6 0.132 1 NA 1.1090165591851 7 0.728125839464057 4 4 0 -5.76441019373158 LTS-021 chr5 128301212 135561791 7260580 * c(VTRNA2-1, KIAA1024L, MIR1289-2, MIR3936, MIR3661, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, SLC25A48, ADAMTS19, FSTL4, SEPT8, ACSL6, JADE2, FBXL21, GDF9, UQCRQ, AFF4, SLC27A6, HINT1, HSPA4, CHSY3, C5orf66-AS2, LOC340074, CATSPER3, IL3, IL4, IL5, IL9, IL13, IRF1, LOC389332, LECT2, SMAD5, C5orf56, NEUROG1, TIFAB, ISOC1, SAR1B, CDKL3, RAPGEF6, NA NA NA NA NA NA NA NA NA LTS-021 PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, TRPC7, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, TGFBI, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, CXCL14, H2AFY, SMAD5-AS1, FNIP1, DDX46) 0.0704745783519929 113 0.106571979231265 0.944726181037748 5928 0.529478992942157 4 4 0 -8.11245117289164 LTS-021 NA NA NA NA LTS-021 chr5 135561792 136320928 759137 * c(TRPC7, SPOCK1) 0.0904721346072777 3 0.146646968374165 0.635365835912259 164 0.260988417702341 2 2 0 -8.04809110793412 LTS-021 chr5 136320929 136324118 3190 * SPOCK1 NA 0 NA 1.268 1 NA NA NA NA NA LTS-021 chr5 136324119 140166025 3841907 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SPOCK1, SNHG4, NA NA NA NA NA NA NA NA NA LTS-021 UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.0877947590503307 51 0.117172736573311 0.997804045185911 4577 0.639441817225205 5 5 0 -7.50806467742529 LTS-021 NA NA NA NA LTS-021 chr5 140166026 140166220 195 * PCDHA1 NA 0 NA 0.717 1 NA NA NA NA NA LTS-021 chr5 140166221 140553564 387344 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.0692291984431625 8 0.122703766387647 0.740277150795402 1143 0.421190488635881 6 6 0 -7.67424908751736 LTS-021 chr5 140553565 140558897 5333 * c(PCDHB8, PCDHB7) NA 0 NA 0.225380451040428 65 0.116475707272441 0 NA NA -5.89566499272983 LTS-021 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.119 1 NA NA NA NA NA LTS-021 chr5 140559822 140871400 311579 * c(PCDHGA12, PCDHGC3, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.0951413547862571 33 0.087060922156078 0.721273036711708 1648 0.493279821188118 8 8 0 -7.47822656825253 LTS-021 chr5 140871401 147513647 6642247 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, C5orf46, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA LTS-021 PCDHGA1, KCTD16, HMHB1, GRXCR2, ARAP3, SPINK1, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.0881838373597126 92 0.117132950299509 0.992454947710866 3968 0.540134612793471 4 4 0 -7.59298552195984 LTS-021 NA NA NA NA LTS-021 chr5 147513648 147516508 2861 * SPINK5 NA 0 NA 0.407 1 NA NA NA NA NA LTS-021 chr5 147516509 148207839 691331 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.0538095768035224 3 0.132213211644424 0.673636154030316 427 0.400214722290628 4 4 0 -8.16407780226537 LTS-021 chr5 148207840 149374486 1166647 * c(PPARGC1B, AFAP1L1, GRPEL2, CSNK1A1, ADRB2, SLC26A2, ABLIM3, IL17B, ARHGEF37, MIR143, PDE6A, CARMN, PCYOX1L, SH3TC2, TIGD6) 0.0662681183115139 47 0.106492632848774 1.12777647849319 1693 0.664277111378086 8 8 0 -7.33750867351821 LTS-021 chr5 149374487 149374555 69 * TIGD6 NA 0 NA 0.964 1 NA NA NA NA NA LTS-021 chr5 149374556 160721196 11346641 * c(C5orf52, MIR3142, MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, SLU7, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, LSM11, ZNF300P1, UBLCP1, CSF1R, ADRA1B, SLC36A2, PPP1R2P3, FAM71B, RNF145, EBF1, SLC36A1, FABP6, FAT2, HMGXB3, ATP10B, LARP1, GABRB2, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, GM2A, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, ARSI, IRGM, NIPAL4, NA NA NA NA NA NA NA NA NA LTS-021 IL12B, ITK, SAP30L-AS1, MIR146A, FNDC9, MFAP3, ATOX1, DCTN4, PDGFRB, THG1L, GALNT10, RBM22, NMUR2, RPS14, ZBED8, SGCD, SLC6A7, SPARC, TCOF1, TTC1, CCNJL, SAP30L, CAMK2A, TIGD6, HAVCR2, SMIM3, ADAM19, TIMD4, ZNF300, MYOZ3, PTTG1, CNOT8, HAND1, MED7, CLINT1, CD74) 0.0891181801729984 225 0.116070326759117 0.959514520700715 8443 0.580003358094686 4 4 0 -7.79434933646072 LTS-021 NA NA NA NA LTS-021 chr5 160721197 168201328 7480132 * c(MIR103B1, NUDCD2, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3, CCNG1) 0.11644653390214 49 0.139308233832769 0.72828182415891 1653 0.461086700020861 2 2 0 -7.74679510458896 LTS-021 chr5 168201329 170410122 2208794 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, GABRP, LINC01366, KCNIP1, KCNMB1, LCP2, SPDL1, RANBP17, SLIT3, MIR585) 0.14310456740633 21 0.17778253168247 0.555874876011876 1083 0.300741394418039 1 1 0 -7.64539144348882 LTS-021 chr5 170410123 171639164 1229042 * c(MIR3912, FBXW11, EFCAB9, TLX3, NPM1, RANBP17, STK10, FGF18, UBTD2) 0.0816633984632766 17 0.196131802172747 1.02909361313063 677 0.63436792110783 5 5 0 -7.01194105661472 LTS-021 chr5 171639165 171760569 121405 * c(SH3PXD2B, UBTD2) 0.479 1 NA 0.909374527638101 25 0.494220574912323 3 3 0 -5.76471109111888 LTS-021 chr5 171760570 172347440 586871 * c(DUSP1, SH3PXD2B, NEURL1B, ERGIC1) 0.374382965801285 15 0.161928761526555 0.993611117169544 537 0.548994808675592 3 2 1 -6.7457725350999 LTS-021 chr5 172347441 172378023 30583 * ERGIC1 0 1 NA 1.12833165847403 33 0.45053322154101 4 4 0 -5.76450746326493 LTS-021 chr5 172378024 173380085 1002062 * c(LOC100268168, NKX2-5, CREBRF, LOC285593, RPL26L1, ERGIC1, BNIP1, SNORA74B, CPEB4, STC2, ATP6V0E1, BOD1) 0.0397405377456483 10 0.154635377582234 0.988065936228882 700 0.524712454648597 5 5 0 -7.435712764895 LTS-021 chr5 173380086 173380346 261 * CPEB4 0.328 1 NA 0.885019726447508 7 0.0949972430677659 3 3 0 -5.76447013490919 LTS-021 chr5 173380347 173426825 46479 * c(C5orf47, CPEB4) 0.431 1 NA 1.34134302261117 153 0.913276223139704 6 6 0 -5.7644678990048 LTS-021 chr5 173426826 173426886 61 * C5orf47 NA 0 NA 1.056 1 NA NA NA NA NA LTS-021 chr5 173426887 175386653 1959767 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.241553117460307 17 0.227744584102971 0.769223206887245 510 0.408274551732102 2 2 0 -6.77556683448888 LTS-021 chr5 175386654 175394264 7611 * THOC3 NA 0 NA 0.218050521917557 67 0.18154797345789 0 NA NA -5.84908448318302 LTS-021 chr5 175394265 175395032 768 * THOC3 NA 0 NA 4.74 1 NA NA NA NA NA LTS-021 chr5 175395033 175723359 328327 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) 0.368 1 NA 0.56120589814766 128 0.667437994406936 1 1 0 -5.77070560578952 LTS-021 chr5 175723360 175740061 16702 * SIMC1 NA 0 NA 0.946 1 NA NA NA NA NA LTS-021 chr5 175740062 176734842 994781 * c(MIR4281, GPRIN1, CLTB, HIGD2A, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, HK3, SIMC1, NOP16, UIMC1, RAB24, CDHR2, KIAA1191, NSD1, SNCB, MXD3, UNC5A) 0.263123397630446 52 0.222976315795493 0.905822116416375 2097 0.540246868392811 3 3 0 -6.73581306056301 LTS-021 chr5 176734843 176734846 4 * MXD3 NA 0 NA 1.257 1 NA NA NA NA NA LTS-021 chr5 176734847 177037367 302521 * c(RGS14, LMAN2, B4GALT7, DBN1, F12, GRK6, PRR7-AS1, PFN3, DDX41, FAM193B, TMED9, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.280538845416604 11 0.22615272393994 1.05170271514254 1070 0.560550514989861 3 3 0 -6.7457909264441 LTS-021 chr5 177037368 177053401 16034 * LOC202181 NA 0 NA 0.326 1 NA NA NA NA NA LTS-021 chr5 177053402 177344279 290878 * c(LOC202181, FAM153A, LOC728554) 0 1 NA 0.492876283703851 178 0.461373174503253 0 0 0 -5.76506094422254 LTS-021 chr5 177344280 177347981 3702 * LOC728554 NA 0 NA 0.744 1 NA NA NA NA NA LTS-021 chr5 177347982 177688772 340791 * c(N4BP3, HNRNPAB, NHP2, PROP1, GMCL1P1, RMND5B, FAM153C, LOC728554, PHYKPL, COL23A1) 0.295108667057078 22 0.203004083724092 0.972050805200324 583 0.61889474107945 3 3 0 -6.75233851688597 LTS-021 chr5 177688773 177689311 539 * COL23A1 0 1 NA 1.24842551792292 5 0.652000230061309 5 5 0 -5.76441014008538 LTS-021 chr5 177689312 178460947 771636 * c(ZNF354B, ZNF454, GRM6, ZNF879, CLK4, ZNF354A, AACSP1, ZFP2, COL23A1) 0.1522099670265 18 0.212944015165421 0.877209674803231 628 0.642637926073365 4 4 0 -6.85842821896578 LTS-021 chr5 178460948 178461594 647 * ZNF879 0.37 1 NA 1.17002913103482 15 0.501086533730167 5 5 0 -5.7644161029632 LTS-021 chr5 178461595 179201847 740253 * c(C5orf60, ZNF354C, HNRNPH1, CBY3, RUFY1, CANX, ADAMTS2, MAML1) 0.39544791146064 42 0.137603220679835 0.874800834475371 918 0.518388377917435 3 2 1 -6.79374012732359 LTS-021 chr5 179201848 179202614 767 * MAML1 0 1 NA 0.856744720233136 17 0.351339056116654 2 2 0 -5.76443816152263 LTS-021 chr5 179202615 180687916 1485302 * c(MIR1229, MIR4638, HEIH, RACK1, BTNL3, MGAT4B, OR2Y1, BTNL9, TBC1D9B, FLT4, RASGEF1C, OR2V1, OR2V2, LTC4S, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CNOT6, SNORD95, SNORD96A, ZFP62, LINC00847, BTNL8, TRIM7, TRIM52, SQSTM1, TRIM41, SCGB3A1, MAML1, GFPT2) 0.164643750593755 63 0.224880221858899 0.931447625298057 2211 0.609852391119641 3 3 0 -6.83753737764194 LTS-021 chr5 180687917 180688111 195 * TRIM52 NA 0 NA 0.833403916831574 3 0.229208056868281 2 NA NA -5.7644178836818 LTS-021 chr6 203389 312023 108635 * DUSP22 0.371 1 NA 0.852018906845993 27 0.384711806147373 2 2 0 -5.7673145991054 LTS-021 chr6 312024 656363 344340 * c(HUS1B, IRF4, EXOC2, DUSP22) 0.238226804952071 10 0.177735915210054 0.9317563721265 437 0.413167846166001 3 3 0 -6.74148255820855 LTS-021 chr6 656364 2961142 2304779 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, SERPINB6, SERPINB9, EXOC2, WRNIP1, FOXQ1) 0.244843627541686 25 0.203305459838146 1.2888629536738 702 0.727202474898371 5 5 0 -6.76435359591797 LTS-021 chr6 2961143 3046089 84947 * c(LINC01011, HTATSF1P2, NQO2, SERPINB6) 0 1 NA 1.47708028534934 61 0.901053756515752 7 7 0 -5.76456162396074 LTS-021 chr6 3046090 3298453 252364 * c(LOC100507194, TUBB2B, PSMG4, SLC22A23, BPHL, TUBB2A, RIPK1) 0 11 0 1.30205233424016 523 0.736680655386563 0 0 0 -Inf LTS-021 chr6 3298454 3439646 141193 * SLC22A23 0.356 1 NA 1.06266826275614 43 0.539306354874046 4 4 0 -5.76462473821591 LTS-021 chr6 3439647 4079973 640327 * c(PXDC1, FAM217A, FAM50B, C6orf201, SLC22A23, PRPF4B) 0.28788687998421 10 0.1815972650308 1.23725320694037 342 0.571516033371487 5 4 1 -6.74023269586359 LTS-021 chr6 4079974 4716053 636080 * c(ECI2, FAM217A, C6orf201, CDYL) 0.368066017177982 2 0.0530330085889911 0.831801430074894 135 0.383311386926746 2 1 1 -6.76510963229185 LTS-021 chr6 4716054 6169656 1453603 * c(MIR3691, FARS2, RPP40, F13A1, NRN1, LYRM4, PPP1R3G, CDYL) 0.197435740578536 10 0.113408063597298 2.03859790724318 412 1.37931252563385 10 9 1 -6.73480477097334 LTS-021 chr6 6169657 6196066 26410 * F13A1 0 1 NA 1.63901486424408 17 1.11201175009662 8 8 0 -5.76442988085417 LTS-021 chr6 6196067 10930652 4734586 * c(SCARNA27, TFAP2A-AS1, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, SNRNP48, DSP, PIP5K1P1, F13A1, SYCP2L, LINC00518, GCNT2, LY86-AS1, CAGE1, C6orf52, MAK, SLC35B3, TMEM14C, PAK1IP1, RREB1, BLOC1S5, BMP6, SSR1, TFAP2A, HULC, TXNDC5, TMEM14B, RIOK1, GCM2, LY86, EEF1E1) 0.0630963739620858 51 0.116322486150846 2.06549023632576 2449 1.32517986940182 12 12 0 -6.85872006747624 LTS-021 chr6 10930653 10982652 52000 * c(SYCP2L, ELOVL2) 0.438 1 NA 1.74696312000446 83 0.599373216550581 8 8 0 -5.76446238324898 LTS-021 chr6 10982653 25081512 14098860 * c(TMEM170B, LOC100130357, RANBP9, ELOVL2-AS1, MIR4639, CAP2, NRSN1, MBOAT1, HDGFL1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SIRT5, RNF144B, GMPR, GPLD1, MYLIP, HIVEP1, ID4, KAAG1, JARID2, NHLRC1, STMND1, CASC15, ERVFRD-1, NEDD9, GMNN, TBC1D7, NOL7, FAM8A1, DCDC2, TDP2, GFOD1, ELOVL2, CDKAL1, ACOT13, PRL, MRS2, ATXN1, MCUR1, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, C6orf62, NA NA NA NA NA NA NA NA NA LTS-021 DTNBP1, CMAHP, ADTRP, CD83, FAM65B, KIAA0319, NUP153) 0.140451382622482 132 0.114812575951315 2.03991790398807 5714 1.20314151126996 10 10 0 -6.74134802539651 LTS-021 NA NA NA NA LTS-021 chr6 25081513 25605091 523579 * c(CARMIL1, CMAHP) 0.249966377406376 8 0.155314830034261 1.27766830595197 260 0.690631487685004 7 6 1 -6.75913841918957 LTS-021 chr6 25605092 25620360 15269 * CARMIL1 0 1 NA 1.46786043428578 31 0.393813317489719 6 6 0 -5.7645494687544 LTS-021 chr6 25620361 25652579 32219 * c(SCGN, CARMIL1) NA 0 NA 1.25437106538843 12 0.356074675092774 5 NA NA -5.76441854283555 LTS-021 chr6 25652580 25917362 264783 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) 0 6 0 0.83773766359398 341 0.528229777946558 0 0 0 -Inf LTS-021 chr6 25917363 25918714 1352 * SLC17A2 NA 0 NA 1.09 1 NA NA NA NA NA LTS-021 chr6 25918715 26600330 681616 * c(SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HCG11, BTN2A3P, BTN1A1, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, NA NA NA NA NA NA NA NA NA LTS-021 HIST1H4G, HIST1H3F) 0 5 0 1.11333046664633 1306 0.623314299244849 0 0 0 -Inf LTS-021 NA NA NA NA LTS-021 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.259 1 NA NA NA NA NA LTS-021 chr6 26636496 26638861 2366 * ZNF322 0.321 1 NA 0.387165239284602 49 0.184448396263979 0 0 0 -5.76630595129828 LTS-021 chr6 26638862 28972087 2333226 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-021 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0 13 0 1.04397235955593 1963 0.50586343411481 0 0 0 -Inf LTS-021 NA NA NA NA LTS-021 chr6 28972088 29011943 39856 * character(0) NA 0 NA 0.396 1 NA NA NA NA NA LTS-021 chr6 29011944 29431195 419252 * character(0) 0 6 0 0.668150776030446 402 0.46599011556749 0 0 0 -Inf LTS-021 chr6 29431196 29643740 212545 * character(0) 0 5 0 1.05222765745521 373 0.894019361768226 0 0 0 -Inf LTS-021 chr6 29643741 29794867 151127 * character(0) 0.356 1 NA 0.949292636153258 111 0.551304054811645 3 3 0 -5.76444750424307 LTS-021 chr6 29794868 30072069 277202 * character(0) 0 1 NA 1.14317147003713 311 7.0670983782405 4 4 0 -5.76441714420662 LTS-021 chr6 30072070 30072904 835 * character(0) NA 0 NA 1.21 1 NA NA NA NA NA LTS-021 chr6 30072905 30140081 67177 * character(0) 0.194229682169903 16 0.22200180179449 1.30806570657819 274 0.901963153089579 5 5 0 -6.73365391532006 LTS-021 chr6 30140082 30154199 14118 * character(0) 0.39 1 NA 1.30210473858026 53 0.460982041592226 5 5 0 -5.76449003886156 LTS-021 chr6 30154200 30978561 824362 * character(0) 0.311988116625898 41 0.178586028323033 1.3532652220016 2122 0.71049673870435 5 4 1 -6.74016380493684 LTS-021 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.635 1 NA NA NA NA NA LTS-021 chr6 30993285 30997736 4452 * character(0) 0.405534158381891 4 0.0179814719456816 0.499285245564282 82 0.151260174764338 0 0 0 -9.35647348370001 LTS-021 chr6 30997737 31641139 643403 * character(0) 0.384906848227563 99 0.0845192389472127 1.32967246719281 1780 11.5536672323141 9 5 4 -6.79365727073673 LTS-021 chr6 31641140 31675515 34376 * character(0) 0 1 NA 1.54986177990548 177 0.66490976034856 7 7 0 -5.76441018379193 LTS-021 chr6 31675516 31948626 273111 * character(0) 0.265136510228189 43 0.166460990478406 1.38723332332307 1722 0.725067473981899 7 6 1 -6.73821647343046 LTS-021 chr6 31948627 31962056 13430 * character(0) NA 0 NA 0.056 1 NA NA NA NA NA LTS-021 chr6 31962057 31976519 14463 * character(0) NA 0 NA 0.439241002586492 84 0.308401067748865 0 NA NA -5.76510113722828 LTS-021 chr6 31976520 31976553 34 * character(0) 0 1 NA 2.04 1 NA NA NA NA NA LTS-021 chr6 31976554 32014034 37481 * character(0) 0.207 1 NA 0.979488262188432 185 0.659727270992838 3 3 0 -5.76450348102959 LTS-021 chr6 32014035 32549340 535306 * HLA-DRB5 0.298326163532397 104 0.147537185031909 1.36709223454532 1553 0.803840780670407 5 4 1 -6.73980705747847 LTS-021 chr6 32549341 32549611 271 * HLA-DRB5 0.333 1 NA 1.61039913723867 6 0.52943819280441 7 7 0 -5.76441093830478 LTS-021 chr6 32549612 32605419 55808 * c(HLA-DQA1, HLA-DRB5) 0.382832831447185 17 0.0721816540158965 1.99767717480303 57 5.53712528023772 11 6 5 -6.80320970966805 LTS-021 chr6 32605420 32628071 22652 * HLA-DQA1 0.410840707333771 33 0.0888839684559868 0.587870479390537 120 0.722875921364846 0 0 0 -6.93898965318937 LTS-021 chr6 32628072 32628505 434 * character(0) NA 0 NA 1.445 1 NA NA NA NA NA LTS-021 chr6 32628506 33096777 468272 * character(0) 0.356908190719237 98 0.106902466209704 1.28630432168935 1061 1.29111728009958 5 3 2 -6.73321043051437 LTS-021 chr6 33096778 33131166 34389 * character(0) 0 1 NA 1.04169009710593 31 0.912567539406533 4 4 0 -5.76446505727933 LTS-021 chr6 33131167 34360199 1229033 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, C6orf1, LEMD2, GRM4, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, BAK1, UQCC2) 0.2434555931481 61 0.181017227390163 1.3617499804398 2554 0.955397802142492 7 6 1 -6.75031087181349 LTS-021 chr6 34360200 34501442 141243 * c(RPS10-NUDT3, NUDT3, PACSIN1, RPS10) 0.017 1 NA 1.16251215328332 111 0.754007697808058 4 4 0 -5.76499525464466 LTS-021 chr6 34501443 34846206 344764 * c(SPDEF, PACSIN1, UHRF1BP1, C6orf106, SNRPC, TAF11) 0 10 0 1.2957378918297 480 0.599564007911135 0 0 0 -Inf LTS-021 chr6 34846207 35050506 204300 * c(ANKS1A, UHRF1BP1, TAF11) 0.321 1 NA 1.49188458336989 149 0.841809976508934 7 7 0 -5.76467527551641 LTS-021 chr6 35050507 37321902 2271396 * c(MIR3925, MIR5690, CDKN1A, STK38, SLC26A8, CLPS, MAPK14, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, ANKS1A, MTCH1, BRPF3, LOC285847, PNPLA1, CLPSL1, CLPSL2, C6orf222, RAB44, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, TBC1D22B, MAPK13, CPNE5, SRSF3, SRPK1, TCP11, TEAD3, TULP1, ZNF76, RNF8) 0.223769298482686 95 0.191706027280982 1.23966316348645 3331 0.85406211258384 5 5 0 -6.74177035580931 LTS-021 chr6 37321903 37358795 36893 * RNF8 0 1 NA 1.04181721897148 65 0.479524447920902 4 4 0 -5.76462241981622 LTS-021 chr6 37358796 39267483 1908688 * c(LOC100131047, MIR4462, BTBD9, CCDC167, DNAH8, CMTR1, MDGA1, GLO1, GLP1R, SAYSD1, ZFAND3, KCNK5, KCNK17, RNF8) 0.0737428371874787 40 0.16270862544706 1.20000391360815 1664 0.757034969006857 6 6 0 -7.02512309929389 LTS-021 chr6 39267484 39298047 30564 * c(KCNK16, KCNK17) 0.32 1 NA 1.1560080298971 83 0.52982128513453 4 4 0 -5.76462270985811 LTS-021 chr6 39298048 40400288 1102241 * c(KIF6, DAAM2, LINC00951, MOCS1, LRFN2, TDRG1) 0.31496080100263 23 0.142516416085148 1.32107187307576 603 0.837658132043975 5 4 1 -6.73787879649933 LTS-021 chr6 40400289 41002682 602394 * c(UNC5CL, LRFN2) 0 1 NA 1.39480239036506 63 0.429591298882765 6 6 0 -5.76442222185178 LTS-021 chr6 41002683 43588859 2586177 * c(TOMM6, MIR4641, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, FOXP4, KLHDC3, TAF8, PTCRA, LRRC73, TREML5P, ADCY10P1, OARD1, TSPO2, UNC5CL, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, CRIP3, MDFI, MEA1, C6orf226, ATP6V0CP3, NFYA, MRPL2, PEX6, PGC, TREM2, TREM1, POLH, GTPBP2, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, DLK2, SRF, NA NA NA NA NA NA NA NA NA LTS-021 TBCC, BYSL, TFEB, TREML2, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, NCR2, MED20, POLR1C, CUL7) 0.0945347014473347 73 0.177066145015942 1.27455731872648 5332 0.787756978596129 6 6 0 -6.89115996728348 LTS-021 NA NA NA NA LTS-021 chr6 43588860 43640039 51180 * c(RSPH9, GTPBP2, MRPS18A, MAD2L1BP) 0.287 1 NA 1.40347305049177 181 0.670439774584103 6 6 0 -5.76441107641741 LTS-021 chr6 43640040 46047641 2407602 * c(LINC01512, MIR4647, MIR4642, CAPN11, TCTE1, SLC29A1, SPATS1, C6orf223, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, CLIC5, MRPS18A, TMEM63B, AARS2, MRPL14, MIR586, VEGFA, SUPT3H, RUNX2, CDC5L) 0.217180021340713 35 0.185039605117891 1.30186887331851 1583 0.714801235837799 5 5 0 -6.74342420716287 LTS-021 chr6 46047642 46987807 940166 * c(ANKRD66, RCAN2, ADGRF5, TDRD6, ENPP4, ADGRF1, MEP1A, CYP39A1, CLIC5, ENPP5, PLA2G7, SLC25A27) 0.239712470537274 27 0.210951716704621 1.03556577152548 1027 0.530274492916662 4 4 0 -6.74101066249534 LTS-021 chr6 46987808 47646884 659077 * c(ADGRF2, CD2AP, ADGRF1, TNFRSF21) 0.0898222830848785 8 0.185865350647797 1.44833567634324 322 0.910626497354146 9 9 0 -6.80218772962454 LTS-021 chr6 47646885 51695647 4048763 * c(CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF2, DEFB110, DEFB112, DEFB113, DEFB114, GLYATL3, PTCHD4, MUT, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.204853459104457 30 0.215074282810467 0.924697806169256 1271 0.802181525154195 3 3 0 -6.77202801527768 LTS-021 chr6 51695648 51777389 81742 * PKHD1 NA 0 NA 0.985310378588019 72 0.341020340239353 3 NA NA -5.76539917910047 LTS-021 chr6 51777390 51882198 104809 * PKHD1 0 1 NA 1.33561961810685 17 0.719381254764038 6 6 0 -5.76466548174025 LTS-021 chr6 51882199 52144386 262188 * c(IL17F, IL17A, MIR206, MCM3, MIR133B, PKHD1) 0.0379878349201285 10 0.127505163294145 1.15309863249316 360 0.63908116345898 12 12 0 -7.1108427767867 LTS-021 chr6 52144387 52267967 123581 * c(MCM3, PAQR8) 0.372 1 NA 1.11539564714234 27 0.515133017424651 4 4 0 -5.7645366858846 LTS-021 chr6 52267968 53378158 1110191 * c(MIR5685, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, TRAM2-AS1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.343996363101777 35 0.149098326363409 1.15416427043315 1101 0.600656595913327 4 3 1 -6.74102912901673 LTS-021 chr6 53378159 55929347 2551189 * c(MLIP-IT1, FAM83B, TINAG, GCLC, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, BMP5, COL21A1, MLIP) 0.252290726078371 27 0.215882017741278 0.719893045195696 1021 0.410617106757208 2 2 0 -6.83071455906998 LTS-021 chr6 55929348 55929404 57 * COL21A1 NA 0 NA 0.852 1 NA NA NA NA NA LTS-021 chr6 55929405 57512565 1583161 * c(BEND6, ZNF451, RAB23, PRIM2, KIAA1586, DST, COL21A1, BAG2) 0.273412158852151 54 0.182322492482002 0.841007556886165 1666 0.361773021083289 2 2 0 -6.77947455063387 LTS-021 chr6 57512566 58445634 933069 * c(GUSBP4, PRIM2) NA 0 NA 0.882058157005038 21 0.388028263575391 3 NA NA -5.77879197421733 LTS-021 chr6 62390154 64388758 1998605 * c(KHDRBS2, PHF3, LGSN, PTP4A1) 0 1 NA 0.564087682585324 273 0.345046730461726 1 1 0 -5.89309698235465 LTS-021 chr6 64388759 66803203 2414445 * c(PHF3, EYS, LOC441155, SLC25A51P1) 0.291001798194225 12 0.202412195703957 0.570557419878841 642 0.284374187177941 1 1 0 -6.95660818975702 LTS-021 chr6 66803204 67419892 616689 * character(0) 0 1 NA 0.460850771539469 3 0.54329212522669 0 0 0 -5.7663170311549 LTS-021 chr6 67419893 70098789 2678897 * ADGRB3 0.27 1 NA 0.595592173149203 187 0.288978541976667 1 1 0 -5.83270979650262 LTS-021 chr6 70098790 70098901 112 * ADGRB3 NA 0 NA 0.754 1 NA NA NA NA NA LTS-021 chr6 70098902 73906935 3808034 * c(MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472) 0.065777551859124 28 0.128101770058276 0.877786059064682 1577 0.561518986618811 4 4 0 -7.88087952094362 LTS-021 chr6 73906936 73951784 44849 * c(KHDC1L, KCNQ5, KHDC1) 0.085402124333791 5 0.148969124317759 1.26470809171035 67 1.04951380313745 15 15 0 -6.75044254264103 LTS-021 chr6 73951785 74019338 67554 * c(NA, KHDC1) 0.268 1 NA 0.611026778231483 13 0.961026574514502 1 1 0 -5.76446184135098 LTS-021 chr6 74019339 74230528 211190 * c(MB21D1, KHDC3L, EEF1A1, MTO1, DPPA5, NA, OOEP, DDX43, KHDC1) 0.362353999856193 20 0.104066008910337 1.27828290438291 532 0.858400240650993 5 3 2 -6.73467659309126 LTS-021 chr6 74230529 74304412 73884 * c(EEF1A1, SLC17A5) 0 1 NA 1.98591660641367 29 0.971659382533316 10 10 0 -5.76441753036099 LTS-021 chr6 74304413 76618315 2313903 * c(LOC100506804, COL12A1, COX7A2, CD109, SENP6, SLC17A5, FILIP1, MYO6, TMEM30A) 0.152802019467983 24 0.188572190458967 1.21846872298616 1316 0.641004223752675 5 5 0 -6.77300924407498 LTS-021 chr6 76618316 88769295 12150980 * c(HMGN3-AS1, SYNCRIP, SLC35A1, CGA, MRAP2, RWDD2A, RIPPLY2, IRAK1BP1, CFAP206, PRSS35, LCA5, C6orf163, CEP162, DOPEY1, ZNF292, ORC3, IBTK, SNORD50A, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, AKIRIN2, FAM46A, RARS2, SMIM8, SNX14, BCKDHB, RNY4, LINC01590, ELOVL4, SNORD50B, TPBG, TTK, SPACA1, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.0895520471343986 87 0.120007150281493 0.898510931007368 4220 0.508086159082566 3 3 0 -7.79596449771036 LTS-021 chr6 88769296 89321376 552081 * c(CNR1, SPACA1, RNGTT) 0 2 0 0.579954726445042 176 0.273615883412941 0 0 0 -Inf LTS-021 chr6 89321377 90571943 1250567 * c(PNRC1, PM20D2, SRSF12, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, LYRM2, RRAGD, RNGTT, CASP8AP2) 0.09843167476488 32 0.112571693105814 0.987310121864876 1625 0.499607587363592 5 5 0 -7.34859812316092 LTS-021 chr6 90571944 106555802 15983859 * c(LIN28B-AS1, TSTD3, MIR2113, MIR4464, MIR4643, FUT9, ASCC3, BVES, KLHL32, BVES-AS1, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, LIN28B, COQ3, POU3F2, PREP, HACE1, PRDM13, BACH2, PRDM1, POPDC3, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, GJA10, USP45, CCNC, FHL5, CASP8AP2) 0.0771617362412005 53 0.115814491198438 0.828417877164427 3670 0.469287519380507 2 2 0 -8.51739383450521 LTS-021 chr6 106555803 109784977 3229175 * c(LOC100422737, LOC100996634, SEC63, AIM1, CCDC162P, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, C6orf203, SOBP, QRSL1, PDSS2, BEND3, PRDM1, MICAL1, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5, ZBTB24) 0.120039764643972 49 0.105821691737455 0.977588754883554 2467 0.548597680536376 4 4 0 -7.3636948228271 LTS-021 chr6 109784978 136580146 26795169 * c(TRAPPC3L, LINC00271, LOC100287632, MIR3662, SMLR1, LINC01013, MIR5695, TRDN, TRAF3IP2, HBS1L, SMPDL3A, GTF3C6, MTFR2, TMEM200A, NUS1, SLC18B1, SLC16A10, COL10A1, CLVS2, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, EPB41L2, EYA4, FABP7, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CDK19, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, FYN, TMEM244, NA NA NA NA NA NA NA NA NA LTS-021 FAM26E, MCM9, ASF1A, MOXD1, AMD1, GJA1, PDE7B, GPR6, LINC00326, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, TAAR6, HSF2, RSPH4A, C6orf58, ARG1, KPNA5, HMGA1P7, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, MYB, HDDC2, TUBE1, CDC40, RWDD1, ENPP1, ENPP3, PLN, AHI1, VNN3, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, SNORA33, REV3L, TRMT11, ROS1, FAM229B, RPS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, ALDH8A1, MICAL1, MIR548B, TCF21, TPD52L1, TSPYL1, TPI1P3, METTL24, OR2A4, RNF217-AS1, FAM184A, RNF146, TAAR8, RPF2, STX7, L3MBTL3, RSPO3, DDO, SLC22A16, WISP3, VNN2, VNN1, WASF1, TAAR5, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1, ZBTB24, FIG4) 0.112828872342654 232 0.116434006516839 0.864477657001679 12627 0.543588382071174 3 3 0 -7.90588609911378 LTS-021 NA NA NA NA LTS-021 chr6 136580147 136590698 10552 * BCLAF1 0.28 1 NA 0.742287558440121 69 0.268622409194072 2 2 0 -5.7646915974206 LTS-021 chr6 136590699 147891165 11300467 * c(LOC100130476, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, LOC100507557, MIR4465, CITED2, RAB32, IL22RA2, ADAT2, STXBP5, LOC153910, ZC2HC1B, OLIG3, TXLNB, HEBP2, FUCA2, SHPRH, CCDC28A, PHACTR2-AS1, GRM1, HIVEP2, SLC35D3, IFNGR1, ECT2L, SAMD5, MAP3K5, FLJ46906, NMBR, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, PERP, LINC01625, TNFAIP3, KATNBL1P6, STXBP5-AS1, NA NA NA NA NA NA NA NA NA LTS-021 UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, REPS1, PEX3, STX11, MAP7, PHACTR2, BCLAF1) 0.141605747107069 129 0.121093864247258 0.897062458566357 5255 0.498133867164699 3 3 0 -7.30760637703554 LTS-021 NA NA NA NA LTS-021 chr6 147891166 148050859 159694 * character(0) NA 0 NA 1.298 1 NA NA NA NA NA LTS-021 chr6 148050860 152806171 4755312 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, RAET1L, ESR1, TAB2, SASH1, SYNE1, MTHFD1L, ZC3H12D, NUP43, RAET1G, SUMO4, IYD, PCMT1, RMND1, PLEKHG1, ZBTB2, RPS18P9, RAET1K, ULBP3, ARMT1, CCDC170, ULBP2, ULBP1, PPP1R14C, LRP11, PPIL4, LATS1, AKAP12) 0.147704155383213 93 0.0965812171700659 1.00314314253777 3703 0.568490130080007 4 4 0 -7.17070221802634 LTS-021 chr6 152806172 152809482 3311 * SYNE1 NA 0 NA 0.312 1 NA NA NA NA NA LTS-021 chr6 152809483 160560948 7751466 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, SYNE1, IPCEF1, TIAM2, FBXO5, RGS17, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, TULP4, ARID1B, TMEM181, SLC22A1, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, LOC729603, EZR, VIP, ZDHHC14, MYCT1, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.159598824998729 102 0.137438140547626 0.696462028198372 4278 0.628945269701408 2 2 0 -7.46832527228961 LTS-021 chr6 160560949 160564523 3575 * SLC22A1 NA 0 NA 0.193 1 NA NA NA NA NA LTS-021 chr6 160564524 160679400 114877 * c(SLC22A1, SLC22A2) 0.209 1 NA 0.603998539496552 121 0.332754738061653 1 1 0 -5.76572098273706 LTS-021 chr6 160679401 160769550 90150 * c(SLC22A3, SLC22A2) 0 1 NA 0.654975446193413 17 0.34757746703179 1 1 0 -5.76496268200836 LTS-021 chr6 160769551 166571675 5802125 * c(CAHM, PDE10A, PACRG, C6orf118, PACRG-AS1, DKFZp451B082, LPA, MAP3K4, LINC00602, PARK2, PLG, AGPAT4, SLC22A3, T, AGPAT4-IT1, LPAL2, LINC00473, QKI) 0.0640120070928125 41 0.135106958532499 0.598358101962413 1660 0.349496025676175 1 1 0 -8.67213548785679 LTS-021 chr6 166571676 166737980 166305 * c(SFT2D1, PRR18, T) 0.356 1 NA 0.560870478294608 125 0.204378711725198 1 1 0 -5.79859973226481 LTS-021 chr6 166737981 167587642 849662 * c(LOC100289495, MIR1913, MIR3939, RPS6KA2-IT1, FGFR1OP, SFT2D1, CCR6, GPR31, TCP10L2, MPC1, RPS6KA2, RNASET2) 0.168476140563856 22 0.135089268225164 0.698803103089465 659 0.374308297427998 3 3 0 -7.29375373432799 LTS-021 chr6 167587643 167590506 2864 * TCP10L2 NA 0 NA 0.172 1 NA NA NA NA NA LTS-021 chr6 167590507 167622095 31589 * TCP10L2 NA 0 NA 0.256119233377943 139 0.437117425441072 0 NA NA -5.80308537825235 LTS-021 chr6 167622096 167622109 14 * character(0) NA 0 NA 0.441 1 NA NA NA NA NA LTS-021 chr6 167622110 167794761 172652 * c(UNC93A, TCP10, TTLL2) 0.179464967446565 9 0.132544332206247 0.488347315355991 267 0.438625405816632 4 4 0 -7.1374359581565 LTS-021 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 0.756 1 NA NA NA NA NA LTS-021 chr6 167796265 170878853 3082589 * c(HGC6.3, MIR4644, LOC154449, DACT2, WDR27, LINC01558, DLL1, KIF25, C6orf120, LINC00242, AFDN, PHF10, ERMARD, PSMB1, SMOC2, AFDN-AS1, TBP, TCP10, TCTE3, THBS2, FRMD1, LINC00574, FAM120B) 0.226521067077701 61 0.127916571171713 0.691877718526941 1702 0.52200482855707 2 2 0 -7.03287250307795 LTS-021 chr6 170878854 170893599 14746 * c(PDCD2, TBP) NA 0 NA 0.581324583027642 137 0.275363841629476 1 NA NA -5.7652363623181 LTS-021 chr7 193047 193683 637 * FAM20C 0 1 NA 0.935957283401117 13 0.827632249870461 3 3 0 -5.76441013951709 LTS-021 chr7 193684 1785738 1592055 * c(WI2-2373I1.2, ADAP1, PSMG3-AS1, GPR146, TMEM184A, SUN1, TFAMP1, INTS1, GPER1, UNCX, ELFN1, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, MAFK, MICALL2, PSMG3, C7orf50, ZFAND2A, COX19) 0.310060532682612 65 0.171859683932965 1.29608830900543 1894 0.719627195263629 5 4 1 -6.73611088880527 LTS-021 chr7 1785739 1786003 265 * ELFN1 0 1 NA 1.25974315899564 7 0.812797198392247 5 5 0 -5.76441016747199 LTS-021 chr7 1786004 2473867 687864 * c(MIR4655, SNX8, MRM2, ELFN1, NUDT1, CHST12, MAD1L1, EIF3B) 0.128862212237585 14 0.210522374890819 1.32938058186235 524 0.794198147313473 7 7 0 -6.76460139593525 LTS-021 chr7 2473868 2489311 15444 * CHST12 0.468 1 NA 2.61552835058941 11 0.78831280132145 14 14 0 -5.76441028057333 LTS-021 chr7 2489312 2854010 364699 * c(MIR4648, AMZ1, BRAT1, IQCE, GNA12, LFNG, TTYH3) 0.349732811847152 67 0.132077506266932 1.23884777621272 915 0.662474109201534 5 3 2 -6.73490953452364 LTS-021 chr7 2854011 2998072 144062 * c(GNA12, CARD11) 0 1 NA 1.27539231151699 162 0.838216460307354 5 5 0 -5.76448126524108 LTS-021 chr7 2998073 5920600 2922528 * c(RBAK-RBAKDN, MIR4656, RNF216-IT1, SDK1, FOXK1, MMD2, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216P1, RNF216, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, CARD11, TNRC18, AP5Z1) 0.189074297372745 51 0.195408081796461 1.3471796188628 2103 0.835942999850296 6 6 0 -6.73778715287087 LTS-021 chr7 5920601 6017391 96791 * c(RSPH10B, CCZ1, PMS2, OCM) 0.278419332065491 5 0.0516168577114105 0.798727090011863 180 0.767510408197502 6 5 1 -6.76550879305433 LTS-021 chr7 6017392 6018170 779 * PMS2 NA 0 NA 2.972 1 NA NA NA NA NA LTS-021 chr7 6018171 6803674 785504 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.249691753171575 52 0.187346521398022 1.231201509219 1371 0.784095474337284 4 4 0 -6.75324614387331 LTS-021 chr7 6803675 6845594 41920 * c(CCZ1B, RSPH10B2) 0.359 1 NA 0.172466300195331 59 0.323397258297685 0 0 0 -6.00557654474181 LTS-021 chr7 6845595 6845639 45 * CCZ1B NA 0 NA 2.53 1 NA NA NA NA NA LTS-021 chr7 6845640 22852450 16006811 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, LOC100506178, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, IL6, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TOMM7, TMEM106B, CDCA7L, C1GALT1, ANKMY2, RPA3, SP4, TWIST1, UMAD1, ISPD, SCIN, DNAH11, PHF14, NA NA NA NA NA NA NA NA NA LTS-021 HDAC9, RAPGEF5) 0.182791109464125 120 0.193610802351302 1.06979678418718 5222 0.643256582194717 4 4 0 -6.77314361234922 LTS-021 NA NA NA NA LTS-021 chr7 22852451 22857682 5232 * TOMM7 0.39 1 NA 1.54400979161324 19 1.36240304338752 7 7 0 -5.76441017376129 LTS-021 chr7 22857683 22984967 127285 * c(TOMM7, SNORD93, FAM126A) 0.394481517688364 10 0.0639556269785718 0.987276033151666 124 0.382406117579373 4 2 2 -6.93221186230872 LTS-021 chr7 22984968 23015849 30882 * FAM126A 0 1 NA 0.794882642345963 43 0.567469675647627 2 2 0 -5.76441816737331 LTS-021 chr7 23015850 23205585 189736 * c(KLHL7-AS1, KLHL7, FAM126A) 0 2 0 0.933310210879084 113 0.485466295777867 0 0 0 -Inf LTS-021 chr7 23205586 23207415 1830 * KLHL7 NA 0 NA 1.594 1 NA NA NA NA NA LTS-021 chr7 23207416 26192069 2984654 * c(RNU6-16P, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, C7orf31, DFNA5, RPS2P32, OSBPL3, TRA2A, FAM221A, MIR148A, NPY, MPP6, CYCS, KLHL7, STK31, NPVF, CCDC126, NFE2L3) 0.153114036800569 27 0.176022345447577 1.25303130816505 1299 0.859158952086834 6 6 0 -6.77607463403607 LTS-021 chr7 26192070 26223431 31362 * NFE2L3 0.393 1 NA 1.43417719258787 17 1.89665981166272 6 6 0 -5.76441349716264 LTS-021 chr7 26223432 29186256 2962825 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, HOTAIRM1, LOC100506497, HOXA10-HOXA9, HOXA10-AS, HIBADH, CHN2, CBX3, EVX1, HOXA11-AS, JAZF1, C7orf71, SNX10, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC441204, MIR196B, CPVL, TAX1BP1, SKAP2, CREB5, NFE2L3, KIAA0087, TRIL) 0.291692553744277 53 0.168757310221707 1.21402583873403 1944 0.689680200510561 5 4 1 -6.7408290515617 LTS-021 chr7 29186257 29394159 207903 * c(CHN2, CPVL) 0 1 NA 1.27431005566966 33 0.725299554102867 5 5 0 -5.76453772635946 LTS-021 chr7 29394160 30100628 706469 * c(MIR550A3, CHN2, PRR15, DPY19L2P3, FKBP14, WIPF3, LOC646762, PLEKHA8, SCRN1) 0.100795029148387 17 0.168184138407178 1.36850431007452 617 0.857425963564055 8 8 0 -6.81048479518162 LTS-021 chr7 30100629 30102181 1553 * PLEKHA8 NA 0 NA 1.47732855351043 6 0.539712763112627 7 NA NA -5.76441779662207 LTS-021 chr7 30102182 30102280 99 * PLEKHA8 NA 0 NA 1.004 1 NA NA NA NA NA LTS-021 chr7 30102281 30177035 74755 * c(MTURN, PLEKHA8) 0.423 1 NA 0.820684753581487 71 0.430021286731545 2 2 0 -5.76487457369983 LTS-021 chr7 30177036 30890161 713126 * c(MIR550B1, INMT-FAM188B, NOD1, INMT, CRHR2, DKFZP586I1420, MTURN, ZNRF2, GARS, LOC401320, MIR550A1, GGCT, FAM188B) 0.376262194097741 19 0.174783424883583 1.02506167760509 675 0.472291982751238 4 2 2 -6.74755946889352 LTS-021 chr7 30890162 30897803 7642 * c(INMT-FAM188B, AQP1, FAM188B) 0 1 NA 1.18926793687357 21 0.705744048437365 5 5 0 -5.76442950180973 LTS-021 chr7 30897804 31148076 250273 * c(INMT-FAM188B, ADCYAP1R1, GHRHR, AQP1, FAM188B) 0.110730356423165 15 0.199795919687589 0.971168436412942 345 0.504760133545214 6 6 0 -6.88167433610892 LTS-021 chr7 31148077 31149053 977 * ADCYAP1R1 0.468 1 NA 0.847678243775565 21 0.310876165822005 2 2 0 -5.76444524588186 LTS-021 chr7 31149054 31150063 1010 * ADCYAP1R1 0.352654431609867 2 0.109601551083915 0.879147879627421 26 0.493674587619758 3 2 1 -6.73322283096345 LTS-021 chr7 31150064 32338905 1188842 * c(PPP1R17, ADCYAP1R1, CCDC129, PDE1C, NEUROD6) 0.30906728465123 20 0.211121136342448 0.714146445693036 596 0.376296878183581 2 2 0 -6.77950236749556 LTS-021 chr7 32338906 32908945 570040 * c(DPY19L1P1, LOC100130673, MIR550B2, AVL9, LSM5, KBTBD2, LINC00997, ZNRF2P1, MIR550A2) 0.386012986431983 14 0.170120190221147 0.963950125198454 327 0.446724119455828 3 2 1 -6.75466723932329 LTS-021 chr7 32908946 32997073 88128 * c(FKBP9, AVL9, KBTBD2, RP9P) 0 1 NA 0.841315252807214 63 0.738233656363355 2 2 0 -5.76486651746038 LTS-021 chr7 32997074 35244130 2247057 * c(FKBP9, BMPER, AVL9, DPY19L1, BBS9, NPSR1, NPSR1-AS1, NT5C3A, DPY19L2P1, TBX20, RP9) 0.169533852597894 24 0.203713709313632 0.846098532361819 818 0.502654898674954 3 3 0 -6.90425770645881 LTS-021 chr7 35244131 35414769 170639 * c(LOC401324, TBX20) 0.418 1 NA 0.767210581489684 55 0.341806094241466 2 2 0 -5.76489890533494 LTS-021 chr7 35414770 36552656 1137887 * c(KIAA0895, AOAH, LOC401324, ANLN, HERPUD2, EEPD1, SEPT7) 0.389257681418029 30 0.140514260739842 0.965195628401155 642 0.476345886241617 3 2 1 -6.77170796365749 LTS-021 chr7 36552657 36569993 17337 * AOAH 0 1 NA 0.741697080846425 23 0.954871209990114 2 2 0 -5.76444777097097 LTS-021 chr7 36569994 37780986 1210993 * c(MIR1200, AOAH-IT1, AOAH, GPR141, ELMO1) 0.0629795389720913 14 0.176227936815607 0.924875237170172 318 0.654197336557873 5 5 0 -7.22500635616247 LTS-021 chr7 37780987 37901581 120595 * NME8 0.404 1 NA 0.788923984312736 19 0.545739141464414 2 2 0 -5.7644146079303 LTS-021 chr7 37901582 38469039 567458 * c(TRG-AS1, AMPH, TARP, NME8, EPDR1, SFRP4, STARD3NL) 0.395958942005428 22 0.137458037674092 0.746561688858084 485 0.327503587454425 2 1 1 -6.78777529307018 LTS-021 chr7 38469040 38503641 34602 * AMPH 0 1 NA 0.843944544094927 35 0.41659460374031 2 2 0 -5.76502517162682 LTS-021 chr7 38503642 39874090 1370449 * c(POU6F2-AS1, POU6F2, VPS41, AMPH, FAM183BP, LINC00265, YAE1D1, RALA, LOC646999) 0.224800194613984 18 0.226183373174629 0.941030883416782 589 0.512586455281556 3 3 0 -6.74693796171338 LTS-021 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.358 1 NA NA NA NA NA LTS-021 chr7 39892331 39989991 97661 * CDK13 NA 0 NA 0.401347788925041 40 0.286355306461154 0 NA NA -5.78677832763801 LTS-021 chr7 39989992 44611954 4621963 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, YKT6, MPLKIP, AEBP1, HECW1, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, DBNL, NPC1L1, INHBA, RASA4CP, UBE2D4, PGAM2, POLD2, DDX56, URGCP, COA1, PSMA2, MYL7, BLVRA, MRPS24, MRPL32, C7orf25, SUGCT, CAMK2B, POLR2J4, CDK13, STK17A) 0.226798895325121 68 0.22426698615689 0.970267723372467 2662 0.711479179220823 3 3 0 -6.75154573550568 LTS-021 chr7 44611955 44612347 393 * DDX56 0.434 1 NA 1.22489724244144 7 0.30206125206653 5 5 0 -5.76441082384759 LTS-021 chr7 44612348 44866704 254357 * c(TMED4, OGDH, DDX56, PPIA, ZMIZ2, H2AFV) 0.377495738631456 9 0.158247257304651 0.972643050883627 475 0.599213536809692 3 2 1 -6.74613647784747 LTS-021 chr7 44866705 44867296 592 * H2AFV 0 1 NA 0.957897758263407 17 0.514020441914407 3 3 0 -5.76441068313578 LTS-021 chr7 44867297 45761880 894584 * c(RAMP3, ADCY1, NACAD, SNHG15, PURB, MYO1G, SNORA5B, SNORA5C, SNORA9, CCM2, TBRG4, H2AFV) 0.129472949078774 22 0.213046714589553 0.899578709471414 1040 0.540300060720597 4 4 0 -6.92319124288307 LTS-021 chr7 45761881 45761952 72 * ADCY1 0.441 1 NA 1.22050169098772 3 0.21911260423201 5 5 0 -5.76441048766427 LTS-021 chr7 45761953 47874630 2112678 * c(ADCY1, PKD1L1, IGFBP1, IGFBP3, C7orf65, SEPT7P2, TNS3, C7orf69, LINC00525) 0.365009696748188 20 0.167286037734931 0.973696873241474 656 0.458520430774901 3 2 1 -6.74342223228523 LTS-021 chr7 47874631 47874740 110 * PKD1L1 0 1 NA 1.2508205151864 3 1.79051957077641 5 5 0 -5.76441013508156 LTS-021 chr7 47874741 48008974 134234 * c(PKD1L1, HUS1) 0.177641448179798 11 0.207526778118786 1.00236779406658 251 0.563237293280401 5 5 0 -6.75231730575424 LTS-021 chr7 48008975 48065475 56501 * c(SUN3, HUS1) 0 1 NA 1.03525454263086 95 1.5134392860516 4 4 0 -5.7644521489049 LTS-021 chr7 48065476 48260952 195477 * c(C7orf57, ABCA13, SUN3, UPP1) 0 3 0 0.932636737053178 158 0.592413546916361 0 0 0 -Inf LTS-021 chr7 48260953 48266849 5897 * ABCA13 NA 0 NA 0.736 1 NA NA NA NA NA LTS-021 chr7 48266850 48336755 69906 * ABCA13 0.00256498009336757 9 0.00566666666666667 0.733903494790301 215 0.500946708524539 20 20 0 -17.7332201952865 LTS-021 chr7 48336756 48450157 113402 * ABCA13 0.462 1 NA 0.802451393518886 97 0.252392231858964 2 2 0 -5.76489433744296 LTS-021 chr7 48450158 50435777 1985620 * c(C7orf72, IKZF1, ZPBP, ABCA13, CDC14C, VWC2) 0.35979037919061 15 0.162673731306388 0.650585862569678 403 0.364928002533138 1 1 0 -6.74638429263242 LTS-021 chr7 50435778 50436698 921 * IKZF1 0 1 NA 0.701775081911068 21 0.62363124406289 1 1 0 -5.76442552951171 LTS-021 chr7 50436699 53930226 3493528 * c(DDC-AS1, IKZF1, DDC, COBL, POM121L12, GRB10, LINC01446, FIGNL1) 0.247762732330491 18 0.218874072190208 0.769681154411964 727 0.396348851635085 2 2 0 -6.77272672149289 LTS-021 chr7 53930227 53934489 4263 * character(0) NA 0 NA 0.42142918574485 74 0.166828715309321 0 NA NA -5.76592527312021 LTS-021 chr7 53934490 55538381 1603892 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, LANCL2, VOPP1) 0.228482297269901 7 0.242985890242917 0.833836073852944 609 0.395480965576046 2 2 0 -6.80656291549028 LTS-021 chr7 55538382 55540401 2020 * VOPP1 NA 0 NA 0.321758265045216 57 0.190263861762374 0 NA NA -5.76971375702225 LTS-021 chr7 55540402 55540646 245 * VOPP1 NA 0 NA 0.681 1 NA NA NA NA NA LTS-021 chr7 55540647 56148068 607422 * c(SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, MRPS17, PHKG1, PSPH, SNORA15, VOPP1, CCT6A) 0.280750329420264 13 0.205457681711731 0.96851643319965 604 0.798814925027675 3 3 0 -6.74014827165041 LTS-021 chr7 56148069 56149847 1779 * c(SUMF2, PHKG1, PSPH) 0.449 1 NA 1.24692982373457 20 1.0143420527613 5 5 0 -5.76441013691124 LTS-021 chr7 56149848 57532683 1382836 * c(LOC100130849, MIR3147, DKFZp434L192, NUPR2, ZNF716, CHCHD2, PHKG1, PSPH, GUSBP10, LOC650226, ZNF479) 0.407068234652739 10 0.152685770274916 0.95194950765218 188 0.523661933882766 3 2 1 -6.80373991933624 LTS-021 chr7 57532684 57533232 549 * ZNF716 NA 0 NA 2.51947640970841 11 2.68151361259746 13 NA NA -5.76441015224218 LTS-021 chr7 62758725 63023528 264804 * ZNF733P 0.28 1 NA 1.05554297098558 7 1.035217000486 4 4 0 -5.76458022670626 LTS-021 chr7 63023529 63985051 961523 * c(LINC01005, ZNF679, ZNF680, ZNF727, YWHAEP1, ZNF736, ZNF735) 0.122577737668649 11 0.196363855218733 0.728380604737752 239 0.498072356374576 3 3 0 -7.1565411517187 LTS-021 chr7 63985052 64152353 167302 * c(LOC100128885, ZNF680, ZNF107, LOC641746) 0.431 1 NA 0.840115845732241 51 0.234901906936391 2 2 0 -5.77260450535006 LTS-021 chr7 64152354 65084068 931715 * c(ZNF273, ZNF92, ERV3-1, ZNF117, ZNF107, CCT6P3, ZNF138) 0.318583595086439 19 0.20072239419697 0.766061044782608 431 0.596529242620201 2 2 0 -6.73908919680832 LTS-021 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 1.178 1 NA NA NA NA NA LTS-021 chr7 65150661 70765503 5614843 * c(MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, TPST1) 0.26383536407132 24 0.217366313237435 0.982782368629303 1182 0.612668897485247 3 3 0 -6.75211506172478 LTS-021 chr7 70765504 71134981 369478 * c(MIR3914-1, MIR3914-2, WBSCR17) 0 1 NA 1.11634528991639 41 0.661987573569909 4 4 0 -5.76465793008618 LTS-021 chr7 71134982 71250124 115143 * c(WBSCR17, CALN1) 0 3 0 0.984956439223813 159 0.505009609883176 0 0 0 -Inf LTS-021 chr7 71250125 72721454 1471330 * c(MIR4650-1, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, CALN1, FKBP6, POM121) 0.255223024191419 8 0.219551124862915 0.714748489755207 493 0.882849360473319 2 2 0 -6.76811080203323 LTS-021 chr7 72721455 73010157 288703 * c(TRIM50, TBL2, MLXIPL, NSUN5, FZD9, FKBP6, BAZ1B, BCL7B) 0.0779709658395034 5 0.21734580741298 1.05240528485458 459 0.680955058199369 7 7 0 -6.87982660255798 LTS-021 chr7 73010158 73084309 74152 * c(VPS37D, MLXIPL) 0.348 1 NA 1.21302054519908 87 0.468225489547235 5 5 0 -5.76454831516276 LTS-021 chr7 73084310 74824313 1740004 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, GTF2I, GTF2IP1, NA, GTF2IRD2B, LIMK1, STAG3L2, PMS2P5, RFC2, NCF1, NCF1C, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, RCC1L, ABHD11, GTF2IRD2, DNAJC30, GTF2IRD1) 0.361659341928128 29 0.170431580539876 1.06317432994057 1421 0.657984371448398 4 2 2 -6.7350964327344 LTS-021 chr7 74824314 75048064 223751 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, STAG3L1, GATSL2) 0.340527739730726 3 0.122649908275547 0.509859294529103 116 0.244889187680629 0 0 0 -6.75379225319445 LTS-021 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.698 1 NA NA NA NA NA LTS-021 chr7 75048588 76634994 1586407 * c(POM121C, LOC100133091, MIR4651, CCL26, DTX2, SSC4D, SRRM3, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A) 0.360496232062792 27 0.16348348235479 1.10251397909563 1276 0.620008841676341 4 2 2 -6.73345856271167 LTS-021 chr7 76634995 76713177 78183 * c(PMS2P9, DTX2P1-UPK3BP1-PMS2P11) NA 0 NA 0.824 1 NA NA NA NA NA LTS-021 chr7 76713178 76950035 236858 * c(FGL2, GSAP, CCDC146) 0.461002358959722 9 0.0429227341989197 0.792632682333961 273 0.436271623888588 2 1 1 -9.04655579623251 LTS-021 chr7 76950036 77210821 260786 * c(GSAP, PTPN12) 0 1 NA 1.07702529932954 151 0.490330469090309 4 4 0 -5.7645327211841 LTS-021 chr7 77210822 86568335 9357514 * c(MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, RSBN1L, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, PHTF2, PTPN12, CACNA2D1, TMEM60, CD36, SEMA3E, MAGI2) 0.172072441422196 40 0.222113830830396 0.795538137371305 2657 0.437764692968082 2 2 0 -6.93078850542518 LTS-021 chr7 86568336 86782139 213804 * c(KIAA1324L, DMTF1) 0.482 1 NA 0.671290912101079 57 0.258180821259375 1 1 0 -5.77126978516873 LTS-021 chr7 86782140 87844303 1062164 * c(DBF4, TP53TG1, RUNDC3B, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, DMTF1) 0.351193651310384 26 0.179562288314154 0.814145839383874 1301 0.416118459121344 2 1 1 -6.73847977043226 LTS-021 chr7 87844304 87900770 56467 * SRI 0 1 NA 0.943178931265409 27 0.510717845731592 3 3 0 -5.76441304173436 LTS-021 chr7 87900771 88389503 488733 * c(ZNF804B, STEAP4) 0.108307230117712 5 0.201918795559007 0.902886646932602 230 0.461286042479631 4 4 0 -6.98123298515865 LTS-021 chr7 88389504 88423410 33907 * ZNF804B NA 0 NA 0.303 1 NA NA NA NA NA LTS-021 chr7 88423411 89861907 1438497 * c(C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4) 0.262952638737697 6 0.157842220798703 0.598193561159964 224 0.370276293532559 1 1 0 -6.90404557091272 LTS-021 chr7 89861908 90338754 476847 * c(LOC101409256, STEAP2, CDK14, CFAP69, GTPBP10, CLDN12) 0.079543435639648 14 0.188736166802605 1.03258712791753 536 0.704257923899297 7 7 0 -6.94300127626166 LTS-021 chr7 90338755 90547119 208365 * CDK14 0.444 1 NA 0.839709587710637 35 0.25329514786662 2 2 0 -5.77306076723048 LTS-021 chr7 90547120 92462638 1915519 * c(AKAP9, CDK6, CYP51A1, FAM133B, LRRD1, PEX1, CDK14, ANKIB1, GATAD1, MTERF1, FZD1, RBM48, NA, KRIT1) 0.280672173575885 44 0.19477200310206 0.905155091584389 1666 0.458928775550053 3 3 0 -6.74750572320487 LTS-021 chr7 92462639 92462730 92 * CDK6 NA 0 NA 0.773 1 NA NA NA NA NA LTS-021 chr7 92462731 92762681 299951 * c(CDK6, SAMD9L, SAMD9) 0.280805528431981 3 0.278354689799424 0.628458350377136 222 0.310357785361625 1 1 0 -6.76321360602136 LTS-021 chr7 92762682 92764547 1866 * SAMD9L 0 1 NA 0.67160791845615 41 0.6070410813036 1 1 0 -5.76442114275378 LTS-021 chr7 92764548 92861859 97312 * c(SAMD9L, HEPACAM2, VPS50) NA 0 NA 0.733955504165373 97 0.262086082186645 2 NA NA -5.76833000602376 LTS-021 chr7 92861860 92869150 7291 * VPS50 NA 0 NA 1.051 1 NA NA NA NA NA LTS-021 chr7 92869151 95167403 2298253 * c(MIR4652, BET1, COL1A2, PEG10, GNG11, GNGT1, ASB4, PON1, PON2, PON3, PPP1R9A, VPS50, MIR489, CASD1, MIR653, TFPI2, CALCR, SGCE) 0.0852404600099318 20 0.188606936022484 0.87110215632987 1588 0.436472433438394 3 3 0 -7.24486388875115 LTS-021 chr7 95167404 95499234 331831 * c(DYNC1I1, PDK4, ASB4) 0.451 1 NA 0.953440381732836 187 0.356294555535417 3 3 0 -5.76478943194799 LTS-021 chr7 95499235 97823858 2324624 * c(LOC100506136, SLC25A13, DLX5, DLX6, DYNC1I1, LMTK2, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, SDHAF3, TAC1, MIR591, SHFM1) 0.296227104967066 12 0.188191633472615 0.875666922025575 708 0.578983461732679 3 3 0 -6.77615366344776 LTS-021 chr7 97823859 98030377 206519 * c(BHLHA15, LMTK2, BRI3, TECPR1, BAIAP2L1) 0.268266245429421 17 0.222271379571169 1.10909244557788 447 0.578380915653915 3 3 0 -6.74430059247126 LTS-021 chr7 98030378 98446351 415974 * c(TMEM130, NPTX2, BAIAP2L1) 0 1 NA 1.132491094518 99 0.491234887081236 4 4 0 -5.76578715538898 LTS-021 chr7 98446352 99081656 635305 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, TMEM130, PTCD1, ZNF789, KPNA7, SMURF1, TRRAP, MYH16, BUD31, ATP5J2) 0.047116635830784 15 0.165150090466074 1.13600153080247 1256 0.606664728265126 7 7 0 -7.11506923997989 LTS-021 chr7 99081657 99489195 407539 * c(GS1-259H13.2, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4) 0.0678097491510915 16 0.163989379737429 0.779102986290451 858 0.498215430654708 5 5 0 -7.31208929837033 LTS-021 chr7 99489196 99489868 673 * TRIM4 0.484 1 NA 0.592649303226083 15 0.223046268956103 1 1 0 -5.76444423225893 LTS-021 chr7 99489869 99566058 76190 * c(GJC3, AZGP1, TRIM4) 0.471404082057735 2 0.00565685424949235 0.709052774658601 125 0.305589778793771 2 1 1 -19.9599937261592 LTS-021 chr7 99566059 99567795 1737 * AZGP1 NA 0 NA 2.234 1 NA NA NA NA NA LTS-021 chr7 99567796 99818927 251132 * c(MIR4658, STAG3, COPS6, GPC2, CNPY4, MBLAC1, GATS, LAMTOR4, MIR106B, MIR25, MIR93, MCM7, C7orf43, AZGP1, AZGP1P1, TAF6, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, AP4M1) 0.397623875457927 29 0.116328543570618 1.02930351607437 1126 0.537098309835603 4 2 2 -6.80529143721139 LTS-021 chr7 99818928 99950450 131523 * c(PILRB, GATS, SPDYE3, PMS2P1, PVRIG) 0 1 NA 1.00514374409378 49 0.60651903876775 3 3 0 -5.76541244256375 LTS-021 chr7 99950451 100459297 508847 * c(PCOLCE-AS1, SAP25, POP7, EPHB4, EPO, PPP1R35, NYAP1, FBXO24, GNB2, PILRB, PILRA, AGFG2, C7orf61, LRCH4, PCOLCE, ACTL6B, ZCWPW1, MEPCE, SLC12A9, MOSPD3, GIGYF1, TFR2, ZAN, TSC22D4) 0.245222990812125 33 0.223761316795239 1.08944466401948 1832 1.21721778999423 4 4 0 -6.73723194753169 LTS-021 chr7 100459298 100465619 6322 * c(SLC12A9, TRIP6) 0.464 1 NA 1.20150114953252 67 0.657572220548777 5 5 0 -5.76442127338635 LTS-021 chr7 100465620 100550382 84763 * c(UFSP1, ACHE, SRRT, TRIP6) 0.363457163286811 31 0.0681912553912007 1.13757679296349 301 0.735940477921407 4 2 2 -6.73771703203149 LTS-021 chr7 100550383 100550385 3 * character(0) NA 0 NA 0.339 1 NA NA NA NA NA LTS-021 chr7 100550386 100675249 124864 * c(MUC12, MUC17) 0.36764586588767 105 0.0754828025437151 0.80520780745521 392 0.528646052533776 2 1 1 -6.74395044260183 LTS-021 chr7 100675250 100685515 10266 * MUC17 0.442963662198236 2 0.0445477272147525 0.347948889411655 136 0.170306094895649 0 0 0 -8.39468389550131 LTS-021 chr7 100685516 100701995 16480 * MUC17 0.385795066956314 3 0.0943186089804128 0.642029168658016 96 0.283638946890201 2 1 1 -6.79143329400535 LTS-021 chr7 100701996 100730512 28517 * c(MUC17, TRIM56) NA 0 NA 1.094 1 NA NA NA NA NA LTS-021 chr7 100730513 100782460 51948 * c(SERPINE1, TRIM56) 0.454497179785468 6 0.0563086731034098 1.18900828638723 144 0.871250676224517 7 4 3 -8.12694661501302 LTS-021 chr7 100782461 100797722 15262 * c(AP1S1, SERPINE1) 0 1 NA 2.98854244415916 5 1.36200745225568 16 16 0 -5.76441206075599 LTS-021 chr7 100797723 101926104 1128382 * c(MIR4653, ZNHIT1, AP1S1, COL26A1, CUX1, CLDN15, MOGAT3, NAT16, FIS1, IFT22, VGF, PLOD3, MYL10) 0.0282806358471627 12 0.0952627944162883 1.11215619467643 1060 0.614639441709822 9 9 0 -7.8750465496064 LTS-021 chr7 101926105 101952374 26270 * c(MIR4285, SH2B2, CUX1) 0.391 1 NA 1.02153926873314 63 0.410986011051571 4 4 0 -5.76482420958025 LTS-021 chr7 101952375 102109449 157075 * c(LOC100289561, LOC100630923, MIR5090, SH2B2, LRWD1, ALKBH4, SPDYE6, PRKRIP1, ORAI2) 0.140945447073836 3 0.243064463328832 1.17018722187768 392 0.62863963764088 6 6 0 -6.75606340208491 LTS-021 chr7 102109450 102109980 531 * LRWD1 NA 0 NA 0.662 1 NA NA NA NA NA LTS-021 chr7 102109981 102953544 843564 * c(RPL19P12, RASA4B, SPDYE2B, MIR4467, RASA4, LRRC17, LRWD1, FAM185A, FBXL13, NAPEPLD, POLR2J2, DNAJC2, DPY19L2P2, POLR2J, POLR2J3, ARMC10, PMPCB) 0.277843230199055 15 0.210334382308153 0.890012560041779 631 0.587013759390855 3 3 0 -6.74188115617908 LTS-021 chr7 102953545 102960064 6520 * c(DNAJC2, PMPCB) 0 1 NA 0.799264768571814 19 0.532490710459015 2 2 0 -5.76441426957888 LTS-021 chr7 102960065 103216153 256089 * c(DNAJC2, SLC26A5, RELN, PSMC2, PMPCB) 0.0246767498727051 12 0.105077748992512 0.866164749225252 550 0.499757160837056 11 11 0 -7.66107365062339 LTS-021 chr7 103216154 103251161 35008 * RELN 0.464 1 NA 0.692171487338411 35 0.250012796311164 1 1 0 -5.7671530370523 LTS-021 chr7 103251162 107626770 4375609 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, COG5, DUS4L, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, HBP1, GPR22, SLC26A4-AS1, LHFPL3, LAMB1, ORC5, SLC26A4, PIK3CG, PUS7, PRKAR2B, KMT2E, BCAP29, RELN, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1) 0.289025081559627 62 0.210344151531612 0.876869064649804 2821 0.508770458698032 3 3 0 -6.79178937712535 LTS-021 chr7 107626771 107710268 83498 * c(LAMB4, LAMB1) 0 1 NA 0.891723560085874 155 0.347123218320396 3 3 0 -5.76550706011382 LTS-021 chr7 107710269 112721672 5011404 * c(ZNF277, BMT2, C7orf66, THAP5, LAMB4, LSMEM1, IFRD1, DNAJB9, EIF3IP1, NRCAM, PNPLA8, GPR85, LRRN3, TMEM168, IMMP2L, DOCK4) 0.185661848869331 36 0.216889619721316 0.87933763005407 1517 0.528306401577186 3 3 0 -6.84698999836264 LTS-021 chr7 112721673 115582116 2860444 * c(MIR3666, TFEC, MDFIC, LINC00998, GPR85, PPP1R3A, FOXP2) 0.268145584234556 12 0.219750047402346 0.655566507071556 709 0.365077553113798 1 1 0 -6.8191107311802 LTS-021 chr7 115582117 115590872 8756 * TFEC NA 0 NA 1.56 1 NA NA NA NA NA LTS-021 chr7 115590873 115624397 33525 * TFEC 0 1 NA 0.966289490925341 27 0.796901322591899 3 3 0 -5.76443665888445 LTS-021 chr7 115624398 115850563 226166 * c(TFEC, TES) 0.462 1 NA 0.53717236797638 13 0.270098082849498 0 0 0 -5.78858652470048 LTS-021 chr7 115850564 116917427 1066864 * c(TES, ST7-OT4, MET, WNT2, ST7, CAPZA2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.434331497415602 16 0.12303615660989 0.901738153493961 780 0.41866596931495 3 2 1 -6.9810709894986 LTS-021 chr7 116917428 117350689 433262 * c(CFTR, ASZ1, WNT2) 0 1 NA 0.862945231316126 324 0.391732008689955 3 3 0 -5.77638885664333 LTS-021 chr7 117350690 120988959 3638270 * c(FAM3C, TSPAN12, KCND2, WNT16, LSM8, ING3, ANKRD7, CPED1, CTTNBP2) 0.212811385586861 17 0.224766954474027 0.919093683878998 960 0.505324105515639 3 3 0 -6.76235384848185 LTS-021 chr7 120988960 120988965 6 * FAM3C NA 0 NA 0.444 1 NA NA NA NA NA LTS-021 chr7 120988966 120990550 1585 * FAM3C NA 0 NA 0.296473996103798 41 0.132472523612239 0 NA NA -5.77686841173561 LTS-021 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.745 1 NA NA NA NA NA LTS-021 chr7 120990582 127222279 6231698 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, MIR592, TMEM229A, GCC1, WASL, CADPS2) 0.241267575061852 33 0.227853849855427 0.823837562428913 1971 0.447932334941118 2 2 0 -6.81472169980443 LTS-021 chr7 127222280 129037029 1814750 * c(LOC100130705, MGC27345, FLNC, AHCYL2, TNPO3, SND1, SND1-IT1, TPI1P2, HILPDA, FSCN3, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, ARF5, LEP, PRRT4, LINC01000, MIR129-1, LOC407835, PAX4, RBM28, METTL2B, OPN1SW, LRRC4, CCDC136, SMO, MIR593, GCC1, CALU, FAM71F1, ATP6V1F) 0.221007869742336 61 0.224350866892486 0.98775561091238 2410 0.627326468191654 3 3 0 -6.75757831330191 LTS-021 chr7 129037030 129037159 130 * AHCYL2 0 1 NA 1.07822421268628 3 0.535655050693385 4 4 0 -5.7644101775594 LTS-021 chr7 129037160 129396816 359657 * c(SMKR1, RNA5SP244, AHCYL2, NRF1, STRIP2) 0 10 0 0.988559682026653 402 0.576935622387367 0 0 0 -Inf LTS-021 chr7 129396817 129663496 266680 * c(MIR182, MIR183, MIR96, NRF1, ZC3HC1, UBE2H) 0.48 1 NA 1.22261687273046 179 0.774149650869178 5 5 0 -5.76449871158377 LTS-021 chr7 129663497 130150705 487209 * c(CPA1, CPA2, SSMEM1, KLHDC10, COPG2, MESTIT1, MEST, MIR335, CPA4, ZC3HC1, TMEM209, CPA5, CEP41) 0.312651673243367 27 0.200981126241777 1.03533232845936 911 0.647305201816626 4 3 1 -6.74222071440392 LTS-021 chr7 130150706 130292571 141866 * COPG2 0 1 NA 1.08027033960519 39 0.468768198027321 4 4 0 -5.76445461629186 LTS-021 chr7 130292572 133059768 2767197 * c(TSGA13, KLF14, COPG2, FLJ40288, LINC-PINT, MIR29A, MIR29B1, MKLN1, PODXL, CHCHD3, EXOC4, NA, PLXNA4) 0.127211125974596 16 0.218301282634803 0.92371674135958 1053 0.492772579546016 3 3 0 -6.94666158128589 LTS-021 chr7 133059769 133160069 100301 * EXOC4 NA 0 NA 0.395 1 NA NA NA NA NA LTS-021 chr7 133160070 141445499 8285430 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, LUC7L2, MRPS33, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, MIR490, PTN, KIAA1549, EXOC4, C7orf73, PARP12, CREB3L2, BPGM, NA NA NA NA NA NA NA NA NA LTS-021 AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.164665932192155 147 0.145086738474303 0.674629368383433 6061 0.390443726049282 1 1 0 -7.66110010928016 LTS-021 NA NA NA NA LTS-021 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.323 1 NA NA NA NA NA LTS-021 chr7 141450032 142960309 1510278 * c(MOXD2P, MTRNR2L6, OR9A4, OR9A2, C7orf34, PRSS37, PRSS58, PRSS3P2, EPHB6, CLEC5A, TAS2R39, TAS2R40, OR6V1, KEL, TAS2R3, TAS2R4, PIP, TAS2R5, TRPV6, TRPV5, PRSS1, TAS2R38, SSBP1, NA, MGAM, OR6W1P, MGAM2) 0.213738925373564 91 0.151071238724382 0.492595715824155 2055 0.3520015989415 0 0 0 -7.24118953933444 LTS-021 chr7 142960310 143295524 335215 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.214162971947804 19 0.139427819889233 0.693626382257153 714 0.429895694003241 3 3 0 -6.89316081904207 LTS-021 chr7 143295525 143321183 25659 * TCAF2 NA 0 NA 0.149249469884135 63 0.0715782400205848 0 NA NA -8.34395579371179 LTS-021 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 0.741 1 NA NA NA NA NA LTS-021 chr7 143400289 143533765 133477 * c(LOC154761, TCAF2, CTAGE6) 0.33066290151256 5 0.0538544334293844 0.690812222648861 44 0.294820083452205 1 1 0 -6.77318469008962 LTS-021 chr7 143533766 143548494 14729 * c(LOC154761, TCAF1) NA 0 NA 0.278 1 NA NA NA NA NA LTS-021 chr7 143548495 143549969 1475 * TCAF1 NA 0 NA 0.200562522534033 41 0.102450767474419 0 NA NA -5.82765502976156 LTS-021 chr7 143549970 143550169 200 * TCAF1 NA 0 NA 0.627 1 NA NA NA NA NA LTS-021 chr7 143550170 143884091 333922 * c(OR2A14, OR6B1, OR2F2, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0 1 NA 0.37263806814927 204 0.209707079253784 0 0 0 -6.03951215733525 LTS-021 chr7 143884092 143884103 12 * ARHGEF35 NA 0 NA 0.153 1 NA NA NA NA NA LTS-021 chr7 143884104 144074299 190196 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) NA 0 NA 0.139194431368116 144 0.0954999318598552 0 NA NA -11.7582674033748 LTS-021 chr7 144074300 149577793 5503494 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, CNTNAP2, TPK1, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.142778089279251 74 0.157442831781971 0.653094826149598 2785 0.398388746271867 1 1 0 -7.59767451131093 LTS-021 chr7 149577794 149986715 408922 * ACTR3C 0.182689512361199 4 0.191263343761074 0.38393929001506 147 0.302664991382661 0 0 0 -7.32771440516809 LTS-021 chr7 149986716 149990032 3317 * ACTR3C NA 0 NA 1.234 1 NA NA NA NA NA LTS-021 chr7 149990033 150642583 652551 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, KCNH2, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.16657627594482 26 0.138502346550519 0.591935861298741 897 0.382955631973835 2 2 0 -7.45119022217005 LTS-021 chr7 150642584 153418716 2776133 * c(LINC01003, WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, FABP5P3, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, ACTR3B, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, XRCC2, MIR671, TMUB1, ASIC3) 0.176407950296041 52 0.155534735418069 0.734547407846998 2738 0.403271308399759 2 2 0 -7.13629714156294 LTS-021 chr7 153418717 153584796 166080 * DPP6 NA 0 NA 0.341359422616566 76 0.179390388269575 0 NA NA -6.10096393956494 LTS-021 chr7 153584797 158851817 5267021 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.20521294623434 104 0.135243806275638 0.629452164968589 3111 0.43141652490099 1 1 0 -7.30167960375644 LTS-021 chr7 158851818 159025951 174134 * VIPR2 NA 0 NA 0.507169168698123 53 0.193793363984756 0 NA NA -5.77336010436882 LTS-021 chr8 182757 182949 193 * ZNF596 0.264 1 NA 0.924991763988665 3 0.571107695623163 3 3 0 -5.76441021139287 LTS-021 chr8 182950 4852482 4669533 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.221618176116891 72 0.156517409047359 0.61362698123523 1843 0.328243425086837 1 1 0 -7.09891704008602 LTS-021 chr8 6264045 6693148 429104 * c(LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, ANGPT2, XKR5, AGPAT5, MCPH1) 0.205940564383585 30 0.127422823160017 0.776545038298198 452 0.395043870339943 3 3 0 -6.89503552128414 LTS-021 chr8 6693149 6728046 34898 * c(GS1-24F4.2, XKR5) NA 0 NA 0.455 1 NA NA NA NA NA LTS-021 chr8 6728047 7320405 592359 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.233820504125105 4 0.0163375844807813 0.388424786888159 96 0.367139640572664 4 4 0 -8.83781210171498 LTS-021 chr8 7320406 7332478 12073 * character(0) NA 0 NA 0.01 1 NA NA NA NA NA LTS-021 chr8 7332479 7752350 419872 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) NA 0 NA 0.177695193960325 83 0.12913185565374 0 NA NA -11.1175067488589 LTS-021 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.354 1 NA NA NA NA NA LTS-021 chr8 8175295 9436566 1261272 * c(MIR4660, CLDN23, LOC157273, SGK223, PPP1R3B, TNKS, ERI1, MFHAS1) 0.159107514569216 22 0.147186308887102 0.792754729462472 628 0.618777868478338 4 4 0 -7.05228155387956 LTS-021 chr8 9436567 9437640 1074 * TNKS NA 0 NA 0.351 1 NA NA NA NA NA LTS-021 chr8 9437641 13259178 3821538 * c(FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, CTSB, LINC00599, TDH, PRSS55, C8orf74, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, XKR6, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MIR124-1, MSRA, PINX1, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, NA NA NA NA NA NA NA NA NA LTS-021 TNKS, LONRF1, RP1L1) 0.191445263583115 98 0.133475623458547 0.655957916105812 2541 0.417458039100537 1 1 0 -7.44144447122497 LTS-021 NA NA NA NA LTS-021 chr8 13259179 13356522 97344 * DLC1 NA 0 NA 0.353 1 NA NA NA NA NA LTS-021 chr8 13356523 16859688 3503166 * c(DLC1, SGCZ, C8orf48, FGF20, MSR1, MIR383, TUSC3) 0.137125179795846 10 0.157324858528813 0.497880909542565 411 0.326911411672696 0 0 0 -7.75871365429504 LTS-021 chr8 16859689 16884750 25062 * MICU3 NA 0 NA 0.909 1 NA NA NA NA NA LTS-021 chr8 16884751 21982997 5098247 * c(NAT2, LOC100128993, LZTS1-AS1, NPM2, LZTS1, VPS37A, DMTN, FGL1, XPO7, PSD3, GFRA2, MICU3, LOC286114, CNOT7, LPL, ASAH1, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, INTS10, CSGALNACT1, HR, MTUS1, SH2D4A, FAM160B2, SLC7A2, SLC18A1, NUDT18, FGF17, NAT1, DOK2, MTMR7) 0.199770724196375 101 0.144362950870916 0.675774624304318 3260 0.36015991422205 1 1 0 -7.37656455387798 LTS-021 chr8 21982998 21984580 1583 * HR 0 1 NA 0.891935954958005 9 0.471810637626768 3 3 0 -5.76442128239277 LTS-021 chr8 21984581 24257855 2273275 * c(LOC100507156, SORBS3, ADAM28, NKX2-6, PEBP4, EGR3, R3HCC1, LGI3, RHOBTB2, SLC39A14, LOC254896, ADAMDEC1, LOC286059, LOC389641, LOXL2, MIR320A, NKX3-1, SLC25A37, C8orf58, PIWIL2, PPP3CC, HR, BIN3, CCAR2, PDLIM2, SFTPC, BMP1, POLR3D, STC1, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4, PHYHIP) 0.160795958420893 81 0.150477028516352 0.710715580482005 3168 0.458736982725261 2 2 0 -7.27206670640734 LTS-021 chr8 24257856 24259449 1594 * ADAMDEC1 NA 0 NA 0.508 1 NA NA NA NA NA LTS-021 chr8 24259450 24813985 554536 * c(ADAMDEC1, NEFM, NEFL, ADAM7) 0.0880974960543206 7 0.112362508575295 0.483685907429412 301 0.337501076164151 3 3 0 -8.94571380446039 LTS-021 chr8 24813986 26613957 1799972 * c(PNMA2, ADRA1A, CDCA2, DPYSL2, GNRH1, NEFL, KCTD9, PPP2R2A, EBF2, BNIP3L, DOCK5) 0.154396155881499 35 0.152981033591277 0.684275844054651 1240 0.453595178766816 2 2 0 -7.33172414445082 LTS-021 chr8 26613958 27101394 487437 * c(ADRA1A, STMN4) 0.164741436626716 9 0.164519755652627 0.413914867022931 202 0.336079273820117 0 0 0 -7.5191876925268 LTS-021 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 0.678 1 NA NA NA NA NA LTS-021 chr8 27142392 30690824 3548433 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, SCARA3, SARAF, PNOC, ELP3, PPP2CB, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, HMBOX1, FZD3, UBXN8) 0.120806117297305 68 0.143049979140319 0.688510291844838 3304 0.383600598013967 2 2 0 -7.79443297612275 LTS-021 chr8 30690825 31498106 807282 * c(PURG, NRG1, TEX15, WRN) 0.126460907591617 4 0.201415615084829 0.557793374544396 483 0.364690844885534 1 1 0 -7.41537226385714 LTS-021 chr8 31498107 31498205 99 * NRG1 NA 0 NA 0.819 1 NA NA NA NA NA LTS-021 chr8 31498206 33347868 1849663 * c(NRG1-IT3, NRG1, TTI2, MAK16, FUT10) 0.101598929774025 3 0.179555933717974 1.00122035890588 288 0.543674648037856 4 4 0 -7.03821645842114 LTS-021 chr8 33347869 33353043 5175 * c(TTI2, MAK16) NA 0 NA 1.269 1 NA NA NA NA NA LTS-021 chr8 33353044 35093287 1740244 * c(UNC5D, DUSP26, RNF122, TTI2, MAK16) 0.218148350286521 8 0.204383699028497 1.5899109464395 226 1.17559944418837 8 7 1 -6.74166770003929 LTS-021 chr8 35093288 37455953 2362666 * c(UNC5D, KCNU1) 0.0744837946070931 7 0.187660788201935 0.927332346488534 469 0.467265167506517 3 3 0 -7.26563613610751 LTS-021 chr8 37455954 43057794 5601841 * c(LOC100130964, MIR4469, AP3M2, ERLIN2, PROSC, CHRNB3, SMIM19, GOT1L1, GPAT4, LETM2, HGSNAT, ADRB3, NKX6-3, ADAM3A, IDO2, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, FNTA, ADAM2, ADAM5, ADGRA2, DKK4, LSM1, ANK1, RNF5P1, IKBKB, IDO1, C8orf86, GOLGA7, PLAT, POLB, WHSC1L1, THAP1, BRF2, C8orf4, PLEKHA2, MIR486-1, SFRP1, SLC20A2, STAR, TACC1, LOC728024, VDAC3, ZMAT4, KAT6A, ZNF703, RAB11FIP1, RNF170, TM2D2, NA NA NA NA NA NA NA NA NA LTS-021 POMK, GINS4, HOOK3, PLPP5, ADAM18, ADAM9, CHRNA6, ASH2L, BAG4) 0.151657838259725 109 0.191087071627714 1.30706344079511 5806 0.774226723556749 6 6 0 -6.77164155000996 LTS-021 NA NA NA NA LTS-021 chr8 43057795 43212050 154256 * c(HGSNAT, POTEA) NA 0 NA 1.15125749791924 49 0.382797366735446 4 NA NA -5.76617896262782 LTS-021 chr8 47752736 48114516 361781 * c(LOC100287846, LINC00293) NA 0 NA 0.797610660351661 97 0.345897649693625 2 NA NA -5.76483157159563 LTS-021 chr8 48114517 48173114 58598 * character(0) NA 0 NA 1.85 1 NA NA NA NA NA LTS-021 chr8 48173115 48243354 70240 * SPIDR 0 1 NA 1.51446104784816 31 0.792043533614021 7 7 0 -5.76444925758024 LTS-021 chr8 48243355 49636816 1393462 * c(CEBPD, SPIDR, MCM4, PRKDC, UBE2V2, EFCAB1) 0.0419904320341496 11 0.100403277744395 1.40129613655552 876 0.665644161456908 10 10 0 -7.37989488467196 LTS-021 chr8 49636817 49636832 16 * EFCAB1 NA 0 NA 0.872 1 NA NA NA NA NA LTS-021 chr8 49636833 52721683 3084851 * c(PXDNL, C8orf22, SNTG1, SNAI2, EFCAB1) 0 10 0 0.984040233886044 424 0.628437619073468 0 0 0 -Inf LTS-021 chr8 52721684 52731018 9335 * c(PCMTD1, PXDNL) 0.38 1 NA 1.14425852037423 31 0.673136246573911 4 4 0 -5.76443723960547 LTS-021 chr8 52731019 52733050 2032 * PCMTD1 0.304508508973064 12 0.125522182030979 1.16976308997096 49 0.565960155054085 5 4 1 -6.73343994747333 LTS-021 chr8 52733051 52860910 127860 * PCMTD1 0 1 NA 1.11547031222821 91 0.612150377352889 4 4 0 -5.76450343905591 LTS-021 chr8 52860911 56717426 3856516 * c(SBF1P1, LYPLA1, XKR4, TMEM68, NPBWR1, MRPL15, FAM150A, OPRK1, ATP6V1H, RP1, SOX17, TCEA1, RGS20, TGS1, ST18, RB1CC1) 0.105471947613804 31 0.175551322030529 1.07484632653638 1630 0.609280345116427 4 4 0 -7.00696879353153 LTS-021 chr8 56717427 56860113 142687 * c(LYN, TGS1) 0.479 1 NA 1.09797781387856 51 0.477631608800643 4 4 0 -5.76442166360462 LTS-021 chr8 56860114 61488859 4628746 * c(LINC00968, LINC01606, UBXN2B, CYP7A1, SDR16C5, LINC00588, SNORD54, LOC286177, LYN, MOS, PENK, PLAG1, IMPAD1, RAB2A, RPS20, SDCBP, CA8, CHCHD7, NSMAF, FAM110B, TOX) 0.304888380108608 31 0.155827454894588 1.05298277882408 1394 0.5996250951485 4 3 1 -6.76508107786993 LTS-021 chr8 61488860 61504468 15609 * RAB2A 0 1 NA 1.75091888057943 13 0.920876651725033 8 8 0 -5.76441806032978 LTS-021 chr8 61504469 62519416 1014948 * c(LOC100130298, CLVS1, ASPH, CHD7, RAB2A) 0.0641940098410639 12 0.156094279979839 1.1297848513242 635 0.634994177195475 7 7 0 -7.11376874534997 LTS-021 chr8 62519417 62537309 17893 * ASPH 0.458 1 NA 1.07344223495423 23 0.393159372888551 4 4 0 -5.76443034024683 LTS-021 chr8 62537310 66525548 3988239 * c(MIR124-2HG, MIR4470, YTHDF3-AS1, YTHDF3, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, ASPH, ARMC1, LINC00251, UG0898H09, TTPA, GGH, CYP7B1) 0.279639754914231 17 0.177099008533446 1.09378423951963 693 0.838983910268285 4 4 0 -6.78659432969535 LTS-021 chr8 66525549 66617190 91642 * c(ARMC1, MTFR1) 0 1 NA 1.19571227018419 47 0.688984189725009 5 5 0 -5.76459980096269 LTS-021 chr8 66617191 67706074 1088884 * c(LINC00967, RRS1-AS1, C8orf44-SGK3, ADHFE1, CRH, RRS1, SGK3, C8orf46, PTTG3P, MYBL1, PDE7A, C8orf44, VCPIP1, TRIM55, DNAJC5B, MTFR1) 0.0515858706476129 14 0.157190809366994 1.11061318668037 1017 0.615937301084273 6 6 0 -7.19910337096785 LTS-021 chr8 67706075 67710724 4650 * c(C8orf44-SGK3, SGK3) NA 0 NA 1.68 1 NA NA NA NA NA LTS-021 chr8 67710725 74700836 6990112 * c(STAU2-AS1, TCF24, C8orf89, MSC-AS1, LINC01592, C8orf44-SGK3, NCOA2, ARFGEF1, COPS5, C8orf34, RDH10, MCMDC2, SBSPON, EYA1, SULF1, TRAM1, SGK3, STAU2, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LACTB2, UBE2W, CPA6, RPL7, PRDM14, SNHG6, SNORD87, TERF1, CSPP1, PREX2, SLCO5A1, TRPA1, MSC, KCNB2) 0.137537015533043 65 0.173264654169901 1.34188735095659 3501 0.738105547272121 6 6 0 -6.78193163244347 LTS-021 chr8 74700837 74700869 33 * UBE2W 0.271 1 NA 3.893 1 NA NA NA NA NA LTS-021 chr8 74700870 74891394 190525 * c(TMEM70, UBE2W, TCEB1) 0.135385645147027 3 0.170371163444209 1.90506316690888 192 0.935039303286819 9 9 0 -6.7332341335286 LTS-021 chr8 74891395 74893431 2037 * TMEM70 NA 0 NA 1.063 1 NA NA NA NA NA LTS-021 chr8 74893432 80578089 5684658 * c(ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, LOC101241902, STMN2, LY96, HNF4G, IL7, MIR2052HG, PI15, ZC2HC1A, GDAP1, TMEM70, PKIA, JPH1, PEX2, ZFHX4, CRISPLD1) 0.114537670980607 28 0.159637332858978 1.13870626853648 1300 1.35781810773076 6 6 0 -6.90939137448237 LTS-021 chr8 80578090 81905604 1327515 * c(MIR5708, STMN2, HEY1, MRPS28, PAG1, ZNF704, ZBTB10, TPD52) 0.138149051628525 17 0.159808295080295 1.5803228270475 916 0.759641769775164 8 8 0 -6.74392493277565 LTS-021 chr8 81905605 82168685 263081 * PAG1 NA 0 NA 1.057 1 NA NA NA NA NA LTS-021 chr8 82168686 92364100 10195415 * c(C8orf88, LRRC69, REXO1L2P, MIR4661, LINC00534, WWP1, SLC26A7, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, ATP6V0D2, REXO1L1P, SLC10A5, IMPA1, CA13, C8orf59, MMP16, NBN, RMDN1, OTUD6B, PMP2, CNGB3, TMEM55A, SNX16, NECAB1, FABP9, FABP12, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, RIPK2, CPNE3, CHMP4C) 0.1532257802257 64 0.170734482869961 1.33825545269562 3234 0.735078376742438 6 6 0 -6.76950127278324 LTS-021 chr8 92364101 92408344 44244 * SLC26A7 0 1 NA 1.2260634489505 63 0.748636671113152 5 5 0 -5.76442136688132 LTS-021 chr8 92408345 104085267 11676923 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, ANKRD46, C8orf37, VPS13B, SNX31, ERICH5, RAD54B, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, TRIQK, DPY19L4, FBXO43, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, FLJ42969, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, NA NA NA NA NA NA NA NA NA LTS-021 PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, RPL30, LINC01298, SDC2, LINC00535, SPAG1, STK3, MIR599, KLF10, UQCRB, YWHAZ, PLEKHF2, NIPAL2, GRHL2, NACAP1, NCALD, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.0692114771797169 119 0.0815778455197658 1.2530251656207 6328 0.746121036823101 6 6 0 -7.82324975462703 LTS-021 NA NA NA NA LTS-021 chr8 104085268 108263337 4178070 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, ATP6V1C1, OXR1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.0672159750300143 30 0.0750049883398569 1.13357344618246 1438 3.72055877294529 17 17 0 -6.94650633423792 LTS-021 chr8 108263338 110352817 2089480 * c(TMEM74, ANGPT1, RSPO2, EIF3E, ENY2, TRHR, NUDCD1, EMC2) 0.0633104670144949 6 0.139714590027909 0.633773985124509 495 0.46560900554374 2 2 0 -8.35040177566849 LTS-021 chr8 110352818 110397738 44921 * c(ENY2, PKHD1L1) 0.294 1 NA 0.626905039913216 85 0.195752539147346 1 1 0 -5.76446301553849 LTS-021 chr8 110397739 113960166 3562428 * c(MIR2053, CSMD3, KCNV1, SYBU, EBAG9, PKHD1L1) 0.133147234010421 39 0.158634919821503 0.576756186749074 1132 0.35331301599281 1 1 0 -7.77738523049807 LTS-021 chr8 113960167 113966828 6662 * CSMD3 NA 0 NA 1.048 1 NA NA NA NA NA LTS-021 chr8 113966829 121013955 7047127 * c(MIR3610, LINC00536, COLEC10, MAL2, CSMD3, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, DEPTOR, TAF2, TRPS1, DSCC1, UTP23, EIF3H, MED30) 0.158178184474136 40 0.219015558222675 0.954326457621812 1742 1.71851295845151 4 4 0 -6.81670051531222 LTS-021 chr8 121013956 121061879 47924 * DEPTOR 0.444 1 NA 1.52509697158041 27 0.282059524743582 7 7 0 -5.76451623767297 LTS-021 chr8 121061880 123966159 2904280 * c(ZHX2, MTBP, MRPL13, HAS2, HAS2-AS1, DEPTOR, SNTB1, COL14A1) 0.362089782134959 22 0.179687342697089 0.883182107106038 763 0.445077831500044 3 2 1 -6.76663001818853 LTS-021 chr8 123966160 124025682 59523 * c(ZHX2, DERL1) 0.471 1 NA 0.90069227676955 9 0.340170177999189 3 3 0 -5.76493808153774 LTS-021 chr8 124025683 124381370 355688 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, ZHX1, ATAD2, DERL1, C8orf76, FAM83A, TBC1D31) 0.0347626339871139 9 0.154333333333333 0.925342016830202 603 0.539576174110321 8 8 0 -7.30906775467987 LTS-021 chr8 124381371 124440174 58804 * c(ATAD2, WDYHV1) 0.481 1 NA 1.27461230364852 47 0.40593876535888 5 5 0 -5.76452770907939 LTS-021 chr8 124440175 124664663 224489 * c(FBXO32, KLHL38, WDYHV1) 0.396660085172398 19 0.145020305091697 1.01382304827495 269 0.46724914243988 4 2 2 -6.77979280017183 LTS-021 chr8 124664664 124798013 133350 * c(FAM91A1, ANXA13, KLHL38) 0 1 NA 1.04190426225175 143 0.77543057419503 4 4 0 -5.76470252325051 LTS-021 chr8 124798014 136657482 11859469 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, RNF139, ADCY8, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, EFR3A, LRRC6, NSMCE2, LINC01591, ASAP1-IT1, KCNQ3, MIR30B, MIR30D, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, FER1L6, SQLE, TG, CASC8, LINC00977, OC90, TATDN1, NA NA NA NA NA NA NA NA NA LTS-021 WISP1, HPYR1, MTSS1, KIAA0196) 0.194104383082326 90 0.222387363233262 0.914310629165745 4071 0.545096663227619 3 3 0 -6.80067343491277 LTS-021 NA NA NA NA LTS-021 chr8 136657483 136659165 1683 * KHDRBS3 NA 0 NA 0.495 1 NA NA NA NA NA LTS-021 chr8 136659166 139263118 2603953 * c(KHDRBS3, FAM135B) 0.117554129581491 13 0.210979461875637 0.714912117724064 195 0.531713621073212 2 2 0 -7.20037519733102 LTS-021 chr8 139263119 139321179 58061 * FAM135B 0.493 1 NA 0.80826405495077 13 0.318075079832194 2 2 0 -5.76468999314399 LTS-021 chr8 139321180 140743305 1422126 * c(COL22A1, FAM135B, KCNK9, TRAPPC9) 0.251842194728631 10 0.237044979322959 0.767259661319051 441 0.43918403544094 2 2 0 -6.76027538507268 LTS-021 chr8 140743306 140743316 11 * TRAPPC9 NA 0 NA 1.248 1 NA NA NA NA NA LTS-021 chr8 140743317 142487589 1744273 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.275510581522577 26 0.217298178688958 1.07005480532925 1345 0.532209257200744 4 4 0 -6.76491692539163 LTS-021 chr8 142487590 142487799 210 * MROH5 NA 0 NA 0.527 1 NA NA NA NA NA LTS-021 chr8 142487800 143559561 1071762 * c(MIR4472-1, TSNARE1, MROH5, ADGRB1, LINC00051) 0.380803026267071 10 0.147644806508353 0.738595702889156 233 0.443029873621541 2 1 1 -6.76031869234925 LTS-021 chr8 143559562 143592339 32778 * ADGRB1 0 1 NA 0.80879277551003 55 0.487032315246408 2 2 0 -5.76448065059086 LTS-021 chr8 143592340 143954302 361963 * c(LOC100288181, LYPD2, CYP11B1, ARC, GML, THEM6, LY6K, SLURP1, ADGRB1, LYNX1, PSCA, LY6D, JRK) 0 8 0 0.908030780399904 581 0.561488306222675 0 0 0 -Inf LTS-021 chr8 143954303 143954373 71 * CYP11B1 NA 0 NA 0.649 1 NA NA NA NA NA LTS-021 chr8 143954374 144032128 77755 * c(CYP11B1, CYP11B2) 0 1 NA 0.540891311365389 167 0.39098288108754 0 0 0 -5.76888498997943 LTS-021 chr8 144032129 144099790 67662 * c(CDC42P3, LOC100133669) 0 1 NA 1.31886853537532 17 0.791862719274288 5 5 0 -5.76462467457554 LTS-021 chr8 144099791 144124512 24722 * c(LOC100133669, C8orf31, LY6E) 0.469 1 NA 1.03681555153515 45 0.565361896255287 4 4 0 -5.76453451972703 LTS-021 chr8 144124513 144689146 564634 * c(RHPN1, TOP1MT, EEF1D, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6H, MROH6, PYCRL, RHPN1-AS1, GSDMD, ZNF696, TIGD5, NAPRT) 0.387983941611729 53 0.147035983866277 0.987992827508566 1113 0.496451612641883 3 2 1 -6.76745867827715 LTS-021 chr8 144689147 144798505 109359 * c(CCDC166, ZNF707, BREA2, PYCRL, TSTA3, ZNF623) 0 1 NA 0.918104452177074 303 0.563061818737028 3 3 0 -5.76451226032806 LTS-021 chr8 144798506 144990407 191902 * c(MIR937, FAM83H-AS1, MIR4664, MAPK15, PUF60, SCRIB, FAM83H, NRBP2, PLEC, EPPK1) 0.173978256404053 22 0.240795147439277 0.971420049971402 792 0.622795219567421 5 5 0 -6.75862048748795 LTS-021 chr8 144990408 144990528 121 * PLEC 0.462 1 NA 1.0257217178965 3 0.234291129437999 4 4 0 -5.76441526338877 LTS-021 chr8 144990529 145066853 76325 * c(GRINA, PLEC, MIR661, PARP10) 0.416348731470695 36 0.130158206541726 0.995011087348078 597 0.442701569216631 4 2 2 -6.85514013942439 LTS-021 chr8 145066854 145107798 40945 * c(OPLAH, GRINA, SPATC1) 0 1 NA 0.88878294521346 103 0.816904205441541 3 3 0 -5.76452016759377 LTS-021 chr8 145107799 145577829 470031 * c(CYC1, BOP1, OPLAH, HSF1, WDR97, TMEM249, HGH1, EXOSC4, SCX, MROH1, SHARPIN, SCRT1, MAF1, DGAT1, GPAA1) 0.292710110910645 12 0.234884433221312 0.926170095380799 835 0.504739285470562 3 3 0 -6.74537914391265 LTS-021 chr8 145577830 145579230 1401 * c(FBXL6, TMEM249) 0 1 NA 0.998194822317349 16 0.527971207390454 3 3 0 -5.7644215037134 LTS-021 chr8 145579231 145622397 43167 * c(MIR939, ADCK5, FBXL6, CPSF1, TMEM249, SLC52A2) 0.17950110258562 10 0.23296294412059 0.945047039675629 240 0.478065011783577 5 5 0 -6.74657906016228 LTS-021 chr8 145622398 145622923 526 * CPSF1 0.476 1 NA 0.96348028330043 12 0.470479027323764 3 3 0 -5.76441109864504 LTS-021 chr8 145622924 145668042 45119 * c(MIR1234, CPSF1, TONSL, VPS28, SLC39A4) 0.431701970883692 14 0.128362381946196 1.06644372351199 340 0.49430778690196 4 2 2 -6.92702063903403 LTS-021 chr8 145668043 145676903 8861 * c(TONSL, CYHR1) 0 1 NA 1.0065304386799 55 0.629017443404985 3 3 0 -5.76447547937943 LTS-021 chr8 145676904 145722665 45762 * c(CYHR1, PPP1R16A, FOXH1, KIFC2) 0.272300046524997 10 0.201530835798837 0.867772057174687 336 0.509868190031961 3 3 0 -6.73619559053385 LTS-021 chr8 145722666 145723419 754 * PPP1R16A 0.451 1 NA 1.31518369505081 13 0.824813110144757 5 5 0 -5.76441212666765 LTS-021 chr8 145723420 145747628 24209 * c(MFSD3, GPT, PPP1R16A, RECQL4, LRRC14) 0.453991600707138 11 0.0297962779859865 0.955799134736694 331 0.362880556982468 4 2 2 -10.1254295392915 LTS-021 chr8 145747629 145747920 292 * c(LRRC24, LRRC14) 0.433 1 NA 0.673988586517785 9 0.195358502360262 1 1 0 -5.76442872556561 LTS-021 chr8 145747921 146002834 254914 * c(C8orf82, LRRC24, ARHGAP39, ZNF34, ZNF251, LRRC14) 0.0880996599778725 9 0.177416960231478 0.949544403732551 405 0.559879272700821 7 7 0 -6.95425425737631 LTS-021 chr8 146002835 146015961 13127 * c(RPL8, ZNF34) 0.346 1 NA 1.14547634510125 29 0.457295271697884 4 4 0 -5.76449651812964 LTS-021 chr8 146015962 146105917 89956 * c(COMMD5, ZNF517, ZNF250, RPL8, ZNF7) 0.365953606932619 9 0.147228563804718 1.03839442503215 309 0.519824009771372 4 2 2 -6.73549754954747 LTS-021 chr8 146105918 146106066 149 * c(COMMD5, ZNF250) 0.042 1 NA 0.838189461601434 5 0.79205448044942 2 2 0 -5.76441073021264 LTS-021 chr8 146106067 146220827 114761 * c(ZNF252P, TMED10P1, COMMD5, ZNF250, ZNF16) 0.168719569168079 15 0.23172257632987 0.916689442601792 261 0.600410912784721 5 5 0 -6.7622633970527 LTS-021 chr8 146220828 146280905 60078 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) NA 0 NA 0.899563868324643 133 0.446786782511651 3 NA NA -5.76473805014148 LTS-021 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.404 1 NA 0.544859900253609 7 0.343367497144442 0 0 0 -5.77614689057864 LTS-021 chr9 154796 5892525 5737730 * c(RCL1, DMRT2, INSL6, C9orf66, KCNV2, GLIS3, DMRT1, MLANA, KANK1, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, PUM3) 0.189277097842208 77 0.153125341240012 0.644169122362409 2950 0.381616399416334 1 1 0 -7.2940779205896 LTS-021 chr9 5892526 5897584 5059 * MLANA 0 1 NA 0.560744728182493 5 1.0046415778774 1 1 0 -5.76445357716185 LTS-021 chr9 5897585 6589391 691807 * c(MIR4665, UHRF2, KIAA2026, MLANA, RANBP6, GLDC, TPD52L3, IL33) 0.0822176650982775 11 0.161574806767077 0.615690530582976 676 0.32891509743292 2 2 0 -7.88331690582609 LTS-021 chr9 6589392 6592061 2670 * GLDC NA 0 NA 1.162 1 NA NA NA NA NA LTS-021 chr9 6592062 6815060 222999 * c(KDM4C, GLDC) 0.067085119534357 3 0.151843120796872 1.02577965441402 99 0.66392033815775 10 10 0 -6.96235359386527 LTS-021 chr9 6815061 7046901 231841 * KDM4C 0.458 1 NA 1.31519465017698 73 0.595653281861001 5 5 0 -5.76558627023501 LTS-021 chr9 7046902 14081933 7035032 * c(LINC00583, KDM4C, LURAP1L, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, TMEM261) 0.252621759176832 26 0.204500475831683 1.06509011562372 893 0.470203820744525 4 4 0 -6.75459245897293 LTS-021 chr9 14081934 14088071 6138 * NFIB 0 2 0 1.93860079787726 135 0.797583288746424 0 0 0 -Inf LTS-021 chr9 14088072 14088189 118 * NFIB NA 0 NA 1.238 1 NA NA NA NA NA LTS-021 chr9 14088190 19435162 5346973 * c(C9orf92, MIR3152, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, CCDC171, ZDHHC21, ACER2, LOC389705, NFIB, BNC2, HAUS6, CNTLN, DENND4C, RPS6, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.294334959078179 51 0.154604050881662 1.10459518684674 2599 0.699238498245024 4 3 1 -6.77454227514095 LTS-021 chr9 19435163 19516132 80970 * c(SLC24A2, ACER2) 0 1 NA 1.07885740844274 47 0.507703843214163 4 4 0 -5.76443738739407 LTS-021 chr9 19516133 21029370 1513238 * c(MIR4473, MIR4474, SLC24A2, HACD4, MLLT3, FOCAD, MIR491) 0.0997438362886566 13 0.172737833071852 1.17277108593014 585 0.614992453975102 6 6 0 -6.93329653291456 LTS-021 chr9 21029371 21077716 48346 * c(IFNB1, HACD4) 0.454 1 NA 1.15323527328447 23 0.624396166806403 4 4 0 -5.76463228591965 LTS-021 chr9 21077717 21351324 273608 * c(IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KLHL9) NA 0 NA 0.977335436450922 245 0.704215224180231 3 NA NA -5.76494783690344 LTS-021 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-021 chr9 21367330 21441235 73906 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.371 1 NA 0.510455336015656 83 0.414784776143158 0 0 0 -5.76544009577123 LTS-021 chr9 21441236 22155079 713844 * c(CDKN2B-AS1, CDKN2A, CDKN2B, IFNE, IFNA1, MIR31, MTAP, CDKN2A-AS1, MIR31HG) 0.202325381211083 5 0.217252617935895 1.34465405497793 350 0.686773152566675 5 5 0 -6.73843418850314 LTS-021 chr9 22155080 22155087 8 * character(0) NA 0 NA 0.237 1 NA NA NA NA NA LTS-021 chr9 22155088 24545498 2390411 * c(IZUMO3, ELAVL2, LINC01239, DMRTA1) 0.300237818646951 4 0.211538018647555 0.689791260325372 202 0.374850375515928 1 1 0 -6.83396185337438 LTS-021 chr9 24545499 26904901 2359403 * c(IZUMO3, LOC100506422, TUSC1, CAAP1, PLAA) 0.412724363623774 11 0.146450550140188 0.933525647990262 185 0.434504349765048 3 2 1 -6.82642334514532 LTS-021 chr9 26904902 26990131 85230 * c(IFT74, PLAA) 0 1 NA 0.93717447116211 121 1.05510085139363 3 3 0 -5.76441026057371 LTS-021 chr9 26990132 27376799 386668 * c(LINC00032, EQTN, LRRC19, TEK, MOB3B, IFT74) 0.139470749310644 16 0.217072491731833 0.994485253823598 547 0.457132991360484 5 5 0 -6.835888030849 LTS-021 chr9 27376800 27378301 1502 * MOB3B 0.49 1 NA 1.05537816259132 31 0.197639527412152 4 4 0 -5.76443683164236 LTS-021 chr9 27378302 32629983 5251682 * c(MIR876, MIR873, TOPORS-AS1, TOPORS, TAF1L, LINGO2, C9orf72, DDX58, LINC01242, NDUFB6, ACO1, IFNK, MOB3B) 0.331004757909979 14 0.195722513262532 0.952120545416392 697 0.52549306770126 3 2 1 -6.74400091505103 LTS-021 chr9 32629984 32787349 157366 * c(TAF1L, TMEM215) 0.0926783175183895 4 0.2155 0.564073323552642 168 0.278006981773376 3 3 0 -7.37295051404413 LTS-021 chr9 32787350 33568800 781451 * c(B4GALT1, SPINK4, DNAJA1, AQP3, AQP7, TMEM215, SUGT1P1, ANKRD18B, NFX1, CHMP5, APTX, SMU1, BAG1, NOL6) 0.388150907251151 21 0.138329489332707 1.04075806827193 1008 0.654381570670402 4 2 2 -6.76480677309486 LTS-021 chr9 33568801 33571448 2648 * ANKRD18B NA 0 NA 0.612 1 NA NA NA NA NA LTS-021 chr9 33571449 33799249 227801 * c(PTENP1, ANXA2P2, ANKRD18B, PRSS3) 0.367968519899415 13 0.0809799753658669 0.573667429075274 174 0.260626179322956 0 0 0 -6.80657659473112 LTS-021 chr9 33799250 33817466 18217 * UBE2R2 NA 0 NA 3.694 1 NA NA NA NA NA LTS-021 chr9 33817467 33935736 118270 * c(SNORD121B, UBE2R2, UBAP2) 0.4520704022284 4 0.0467225855448947 1.00813746999653 194 0.575572006588613 4 2 2 -8.52903008857576 LTS-021 chr9 33935737 33941759 6023 * UBAP2 0.25 1 NA 0.978478478469977 15 0.376752754595422 3 3 0 -5.7644539191542 LTS-021 chr9 33941760 34250852 309093 * c(SNORD121A, DCAF12, KIF24, UBAP1, UBAP2) 0.1542173584864 9 0.217838689044082 1.10870806976911 253 0.598286697622137 5 5 0 -6.76714519189425 LTS-021 chr9 34250853 34251943 1091 * c(KIF24, UBAP1) 0.444 1 NA 0.990769113605891 17 0.265371798005121 3 3 0 -5.76443717123759 LTS-021 chr9 34251944 34407204 155261 * c(FAM219A, NUDT2, KIF24, UBAP1, KIAA1161, C9orf24) 0.403638922420423 19 0.152390580052997 0.972060129411824 449 0.448955204172934 4 2 2 -6.79370339167298 LTS-021 chr9 34407205 34490125 82921 * c(FAM219A, DNAI1) 0 1 NA 0.941230129618248 65 0.485281161068984 3 3 0 -5.76441163230191 LTS-021 chr9 34490126 34723813 233688 * c(SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, GALT, FAM205A, DNAI1, IL11RA, ENHO, CNTFR-AS1, CCL19, CCL21) 0.469 1 NA 0.989335560205104 531 0.530671760681864 3 3 0 -5.76578257170075 LTS-021 chr9 34723814 34726347 2534 * FAM205A 0.251983868449417 2 0.0346482322781408 0.277211493697786 72 0.417892057256413 3 3 0 -6.77224649117167 LTS-021 chr9 34726348 34833277 106930 * c(FAM205A, FAM205BP) 0.160424804898017 5 0.240730554770266 0.753270222965534 89 0.588775328444634 5 5 0 -6.79612486211877 LTS-021 chr9 34833278 34833287 10 * FAM205BP NA 0 NA 0.452 1 NA NA NA NA NA LTS-021 chr9 34833288 34835727 2440 * FAM205BP 0.485149606737105 2 0.00494974746830584 0.33273905462338 62 0.21442441986632 0 0 0 -21.4076380059318 LTS-021 chr9 34835728 35684294 848567 * c(MIR4667, UNC13B, C9orf131, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SIT1, STOML2, FAM205BP, RMRP, TESK1, TPM2, FAM166B, VCP, CA9, FAM214B, PIGO, ARHGEF39, CD72, RUSC2) 0.170595623471622 35 0.230588439804403 0.977035402084726 1611 0.573422870412162 4 4 0 -6.78715398698833 LTS-021 chr9 35684295 35690102 5808 * TPM2 0.471 1 NA 1.12925223169151 51 0.769352030390943 4 4 0 -5.76441679137886 LTS-021 chr9 35690103 35958047 267945 * c(CREB3, LINC00961, SPAG8, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, HRCT1, MSMP, TLN1, HINT2, LINC00950, RGP1) 0.423889296455723 31 0.120175337852477 1.01861911197869 1141 0.473385994447037 4 2 2 -6.91407633668758 LTS-021 chr9 35958048 36063970 105923 * c(OR2S2, RECK) 0 1 NA 1.08700583893143 39 0.504840931108005 4 4 0 -5.76441518520995 LTS-021 chr9 36063971 36836218 772248 * c(GNE, MIR4475, CLTA, RNF38, GLIPR2, RECK, CCIN, MELK) 0.286637014161168 17 0.179052346108781 0.97576689489951 731 0.508268755689394 3 3 0 -6.74971549272428 LTS-021 chr9 36836219 36836692 474 * character(0) 0 1 NA 0.801570593687109 11 0.604590680468274 2 2 0 -5.76441045127111 LTS-021 chr9 36836693 38527470 1690778 * c(EBLN3P, MIR4540, MIR4476, TRMT10B, ALDH1B1, FRMPD1, FBXO10, IGFBPL1, TOMM5, PAX5, EXOSC3, POLR1E, SHB, DCAF10, ZCCHC7, SLC25A51, GRHPR, ZBTB5) 0.156661078691315 22 0.217620230987528 0.943318529685731 1212 1.52421235949829 5 5 0 -6.79091117534902 LTS-021 chr9 38527471 38571981 44511 * c(FAM95C, ANKRD18A) NA 0 NA 0.393090460538293 48 0.141426845924764 0 NA NA -5.81632603027593 LTS-021 chr9 38571982 39140675 568694 * c(FAM95C, FAM201A, ANKRD18A, CNTNAP3) 0.201665454616095 4 0.266187903556867 0.82103764711455 166 0.439279933261625 3 3 0 -6.79254528938547 LTS-021 chr9 39140676 39172772 32097 * CNTNAP3 NA 0 NA 0.342 1 NA NA NA NA NA LTS-021 chr9 39172773 44175692 5002920 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0 2 0 0.354561117815655 114 0.38402675515199 0 0 0 -Inf LTS-021 chr9 44175693 44175697 5 * c(LOC286297, LINC01189) NA 0 NA 0.884 1 NA NA NA NA NA LTS-021 chr9 65602571 87491480 21888910 * c(FRG1HP, FAM27B, LOC100133920, VPS13A-AS1, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, RASEF, PRUNE2, TMEM252, ALDH1A1, SMC5, VPS13A, TMEM2, FXN, MAMDC2, FRMD3, GCNT1, OSTF1, GNAQ, LOC286297, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, SPATA31D5P, AQP7P1, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, MIR204, MIR7-1, IDNK, LOC440896, PTGER4P2-CDK2AP2P2, FOXB2, NTRK2, NA NA NA NA NA NA NA NA NA LTS-021 C9orf135-AS1, PCA3, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, KIF27, PRKACG, PGM5-AS1, PGM5P2, RORB, SLC28A3, FRG1JP, CBWD6, RPSAP9, FOXD4L6, FOXD4L5, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, RMI1, TRPM3, GKAP1, PIP5K1B, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14) 0.266383901354978 187 0.206814873145902 0.947937218248099 7242 0.569846154137507 3 3 0 -6.7375955037246 LTS-021 NA NA NA NA LTS-021 chr9 87491481 87491958 478 * NTRK2 0 1 NA 0.824470959630706 13 0.805857681333437 2 2 0 -5.76441116546142 LTS-021 chr9 87491959 88842733 1350775 * c(AGTPBP1, LOC389765, C9orf153, NTRK2, GOLM1, NAA35) 0 9 0 0.916444574829494 525 0.549979978902639 0 0 0 -Inf LTS-021 chr9 88842734 88934624 91891 * c(C9orf153, GOLM1, ZCCHC6, ISCA1) 0.36 1 NA 0.879609934555275 149 0.624679491409092 3 3 0 -5.76500787260338 LTS-021 chr9 88934625 90322054 1387430 * c(GAS1RR, DAPK1, GAS1, C9orf170, LOC440173, LOC494127, ZCCHC6) 0.34966043307132 5 0.200166680543991 0.933260960694704 419 0.465649278727421 3 2 1 -6.7335209556115 LTS-021 chr9 90322055 95608658 5286604 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, ANKRD19P, CTSL, CTSLP8, NXNL2, LINC00475, DAPK1, ECM2, S1PR3, BICD2, CDK20, C9orf47, SPATA31E1, LOC286238, MIR4290HG, IARS, LINC01501, CTSL3P, LOC392364, CENPP, SPATA31C1, NFIL3, ROR2, OMD, OGN, SHC3, DIRAS2, ASPN, AUH, NOL8, SPATA31C2, IPPK, SYK, NA NA NA NA NA NA NA NA NA LTS-021 SECISBP2, ZNF484) 0.2094650747314 57 0.160018275115461 0.65334142262457 2966 0.326203100540188 1 1 0 -7.15755394795255 LTS-021 NA NA NA NA LTS-021 chr9 95608659 95765314 156656 * c(ANKRD19P, ZNF484, FGD3) 0 1 NA 0.546251327418726 89 0.268062370778091 0 0 0 -5.78677281083001 LTS-021 chr9 95765315 97061995 1296681 * c(MIR4291, PTPDC1, MIRLET7DHG, FAM120AOS, ZNF169, SUSD3, FAM120A, MIRLET7A1, MIRLET7D, MIRLET7F1, C9orf129, NINJ1, PHF2, BARX1, WNK2, CARD19, FGD3) 0.171095165636026 33 0.151091038430277 0.691554124553988 1097 0.407639840243621 2 2 0 -7.21659590332728 LTS-021 chr9 97061996 97200853 138858 * c(LOC100132077, ZNF169, NUTM2F, MFSD14B) 0.0933144387718996 3 0.20091789367799 0.386918926890262 126 0.454465963033048 4 4 0 -7.39119860239084 LTS-021 chr9 97200854 97203194 2341 * MFSD14B NA 0 NA 0.635 1 NA NA NA NA NA LTS-021 chr9 97203195 99579644 2376450 * c(LINC00476, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441455, PTCH1, MFSD14B, C9orf3, CDC14B, FBP2) 0.0791579107943521 32 0.134698693027163 0.711321383090871 1728 0.461788305851011 2 2 0 -8.09008378706825 LTS-021 chr9 99579645 99579743 99 * ZNF782 NA 0 NA 0.613 1 NA NA NA NA NA LTS-021 chr9 99579744 99925094 345351 * c(LOC100132781, CTSV, ZNF782, GAS2L1P2, LOC441454, NUTM2G, MFSD14C) 0 4 0 0.550951833691182 233 0.466219696798618 0 0 0 -Inf LTS-021 chr9 99925095 99959512 34418 * character(0) NA 0 NA 0.124 1 NA NA NA NA NA LTS-021 chr9 99959513 99961959 2447 * character(0) 0.336 1 NA 0.167990144388229 46 0.102382771422041 0 0 0 -5.91442010756616 LTS-021 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 0.751 1 NA NA NA NA NA LTS-021 chr9 100041691 104355495 4313805 * c(CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SEC61B, GRIN3A, COL15A1, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.139236579947793 99 0.15598400327097 0.639887966573788 3712 0.358658934727364 1 1 0 -7.61913903023088 LTS-021 chr9 104355496 107510145 3154650 * c(SMC2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, NIPSNAP3A, OR13C9, OR13D1, OR13C2, PPP3R2) 0.185710796632054 25 0.117022262839171 0.463227914987484 599 0.315309493522353 0 0 0 -7.8352087683952 LTS-021 chr9 107510146 107510226 81 * NIPSNAP3A NA 0 NA 0.616 1 NA NA NA NA NA LTS-021 chr9 107510227 108234328 724102 * c(ABCA1, SLC44A1, NIPSNAP3A, NA, NIPSNAP3B, FSD1L) 0.114292222265522 24 0.152612556466709 0.74563060042131 754 0.439172267027621 3 3 0 -7.3478628616702 LTS-021 chr9 108234329 108241521 7193 * FSD1L NA 0 NA 0.269 1 NA NA NA NA NA LTS-021 chr9 108241522 109701335 1459814 * c(MIR548Q, FKTN, TMEM38B, ZNF462, TAL2, FSD1L) 0.124261692760358 9 0.168133131773604 0.562302602896359 652 0.263945727032959 1 1 0 -7.7784633225417 LTS-021 chr9 109701336 109734276 32941 * c(MIR548Q, ZNF462) NA 0 NA 1.133 1 NA NA NA NA NA LTS-021 chr9 109734277 113086042 3351766 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, TMEM245, FRRS1L, TXNDC8, C9orf152, MIR32, PALM2-AKAP2, EPB41L4B, FAM206A, PTPN3, ZNF462, RAD23B, TXN, IKBKAP, CTNNAL1, KLF4) 0.175732815170023 42 0.164229982719837 0.735542419182547 1878 1.86575430370039 4 4 0 -6.87865022651778 LTS-021 chr9 113086043 113086136 94 * TXNDC8 NA 0 NA 0.628 1 NA NA NA NA NA LTS-021 chr9 113086137 114155157 1069021 * c(LPAR1, KIAA0368, TXNDC8, OR2K2, MUSK, SVEP1) 0.189933713895229 17 0.157478219782554 0.554334183803653 802 0.287220734160223 1 1 0 -7.38615254426039 LTS-021 chr9 114155158 114155945 788 * KIAA0368 NA 0 NA 0.909 1 NA NA NA NA NA LTS-021 chr9 114155946 117074810 2918865 * c(FAM225B, MIR3134, MIR4668, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, C9orf43, AMBP, GNG10, FAM225A, SNX30, POLE3, BSPRY, DNAJC25, DNAJC25-GNG10, SLC46A2, INIP, RGS3, MIR455, SUSD1, LRRC37A5P, UGCG, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.134425193877674 85 0.151760847724177 0.719464028662036 3743 0.401306099598492 2 2 0 -7.45738556046922 LTS-021 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.013 1 NA NA NA NA NA LTS-021 chr9 117085363 117092724 7362 * c(ORM1, ORM2) 0.294665484611328 3 0.0878464569575803 0.169241308426261 63 0.215015036566796 2 2 0 -6.95241374775495 LTS-021 chr9 117092725 125239936 8147212 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, WHRN, PHF19, FBXW2, LHX6, GGTA1P, GSN, TNC, OR1J1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, PTGS1, LINC00474, TLR4, TRAF1, C5, AKNA, MRRF, RBM18, TNFSF8, ATP6V1G1, TNFSF15) 0.1263510595882 66 0.147945406676393 0.701680381093964 4127 0.387840821483152 2 2 0 -7.85209346653386 LTS-021 chr9 125239937 125563062 323126 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1) 0.124961465426883 11 0.139147469189411 0.413882939521705 361 0.282244244862636 0 0 0 -8.12074750986729 LTS-021 chr9 125563063 130170009 4606947 * c(LOC100129034, MIR181A2HG, RABEPK, ZBTB6, NEK6, RPL35, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, GOLGA1, GPR21, CRB2, SCAI, SLC2A8, HSPA5, ADGRD2, OR1K1, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PDCL, PBX3, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, NRON, SNORD90, MIR601, MAPKAP1, MIR600HG, ARPC5L, GARNL3, MVB12B, LHX2, RALGPS1) 0.121859237317306 101 0.155278324372083 0.678743510746101 4292 0.407842824562518 2 2 0 -7.77035625876428 LTS-021 chr9 130170010 133339609 3169600 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, CDK9, ZER1, USP20, SLC27A4, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, NCS1, NUP188, FPGS, PHYHD1, CIZ1, SNORA65, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA2, CFAP157, NTMT1, PKN3, SLC2A8, ST6GALNAC6, SWI5, C9orf50, PTGES2-AS1, IER5L, LCN2, FAM102A, MIR199B, NA NA NA NA NA NA NA NA NA LTS-021 MIR219A2, C9orf106, ASS1, ODF2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, GPR107, RPL12, SET, FAM129B, SPTAN1, STXBP1, ZNF79, C9orf16, PTGES2, URM1, ZDHHC12, MIGA2, DPM2, KYAT1, WDR34, LRSAM1, PTGES) 0.120704634311071 106 0.146010227767641 0.770373701506223 6409 0.427769178808398 2 2 0 -7.5287023502293 LTS-021 NA NA NA NA LTS-021 chr9 133339610 136298779 2959170 * c(LOC100272217, LAMC3, CEL, CELP, POMT1, SPACA9, ADAMTS13, AK8, STKLD1, SETX, EXOSC2, ABL1, GBGT1, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, FAM78A, RAPGEF1, OBP2B, QRFP, CFAP77, ASS1, BARHL1, REXO4, RALGDS, PRDM12, RPL7A, DDX31, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, TTF1, NUP214, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, GTF3C5, GTF3C4, MED27) 0.121735116777138 117 0.141395461525238 0.691135344379823 4548 0.512099045660476 2 2 0 -7.67117861783133 LTS-021 chr9 136298780 136301982 3203 * ADAMTS13 0.264 1 NA 0.988648361702546 7 0.133896015090603 3 3 0 -5.76469781060132 LTS-021 chr9 136301983 137300970 998988 * c(RNU6ATAC, MIR4669, WDR5, ADAMTS13, CACFD1, SLC2A6, DBH-AS1, DBH, SARDH, LINC00094, TMEM8C, RXRA, FAM163B, VAV2, BRD3, ADAMTSL2) 0.201167179760006 25 0.147773328671539 0.701480486197212 1113 0.415635008041551 2 2 0 -7.03484121505979 LTS-021 chr9 137300971 137309036 8066 * RXRA NA 0 NA 0.503 1 NA NA NA NA NA LTS-021 chr9 137309037 138714939 1405903 * c(LINC01502, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, COL5A1, C9orf116, CAMSAP1, C9orf62, FCN1, FCN2, OBP2A, GLT6D1, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, KCNT1, RXRA, PPP1R26) 0.216767183650639 48 0.161697740031225 0.565629020472685 1499 0.44839919623312 1 1 0 -7.1314657650757 LTS-021 chr9 138714940 141070283 2355344 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, UBAC1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, NACC2, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCNL1, C9orf139, FAM166A, NA NA NA NA NA NA NA NA NA LTS-021 MIR126, LCN10, STPG3, NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, SEC16A) 0.173325934810895 184 0.146127880766881 0.725127509888662 6266 0.687615158254251 3 3 0 -7.12653002215849 LTS-021 NA NA NA NA LTS-021 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 1.0026051886535 5 0.533894652529879 3 NA NA -5.76442359029269 LTS-021 chr10 94832 285307 190476 * c(ZMYND11, TUBB8) 0 1 NA 0.904097900412483 48 0.501626072201253 3 3 0 -5.7650517419818 LTS-021 chr10 285308 1232341 947034 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, LINC00200, PRR26, IDI2-AS1, IDI2) 0.0880853354676564 20 0.185288530334946 0.965948882163732 1066 0.527446011539077 5 5 0 -7.07553616297059 LTS-021 chr10 1232342 1232500 159 * ADARB2 0.495 1 NA 0.769462004546118 3 0.0714446172453414 2 2 0 -5.76441808305472 LTS-021 chr10 1232501 4867291 3634791 * c(LINC00704, PITRM1-AS1, ADARB2, PITRM1, KLF6, LINC00700, LINC00705, LINC00701, PFKP, ADARB2-AS1) 0.33512476444642 24 0.19394294973941 1.02885142178767 621 0.516110600491948 4 3 1 -6.7618636777684 LTS-021 chr10 4867292 4868445 1154 * AKR1E2 0.5 1 NA 1.10606218661405 3 1.49381268348255 4 4 0 -5.7644101860715 LTS-021 chr10 4868446 4882008 13563 * AKR1E2 0.465724680657494 6 0.0195627196473292 0.827028590714383 40 0.57330096584246 0 0 0 -12.6055584917767 LTS-021 chr10 4882009 4889770 7762 * AKR1E2 0.474934755719421 7 0.0221165742632727 0.548993132357474 29 0.300450007316611 0 0 0 -12.3909390444374 LTS-021 chr10 4889771 4889793 23 * AKR1E2 0 1 NA 5.002 1 NA NA NA NA NA LTS-021 chr10 4889794 5041537 151744 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.22469323247697 7 0.163674328207834 0.489721822347095 174 0.410938963641094 2 2 0 -6.97587817830175 LTS-021 chr10 5041538 5042576 1039 * c(AKR1C2, AKR1C3) NA 0 NA 0.626 1 NA NA NA NA NA LTS-021 chr10 5042577 5436110 393534 * c(AKR1C4, UCN3, AKR1C2, AKR1C8P, TUBAL3, AKR1C3) 0.243008277036232 9 0.246769629411725 0.696163153808878 247 0.408995290709627 2 2 0 -6.7855309385968 LTS-021 chr10 5436111 5496916 60806 * c(NET1, TUBAL3) 0.140456651606265 6 0.223442162538765 0.953448878912425 86 0.483124332078439 6 6 0 -6.77462970597308 LTS-021 chr10 5496917 5499173 2257 * NET1 0.486 1 NA 1.21501354038721 25 0.448303200970058 5 5 0 -5.76441416187684 LTS-021 chr10 5499174 6552951 1053778 * c(MIR3155A, MIR3155B, NET1, GDI2, IL2RA, IL15RA, LOC399715, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, ASB13, CALML3, FBXO18, RBM17) 0.407180549421062 30 0.122574607822169 0.989382933622327 1211 0.480824112380854 3 2 1 -6.8491385762994 LTS-021 chr10 6552952 6553083 132 * PRKCQ 0 1 NA 1.21238374183033 5 0.773181544011495 5 5 0 -5.7644102278188 LTS-021 chr10 6553084 15556788 9003705 * c(PPIAP30, MIR1265, LINC00707, MIR4480, OPTN, RPP38, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ITIH2, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ITIH5, FAM107B, CCDC3, TAF3, PRPF18, CDC123, NMT2, USP6NL) 0.224020269546414 98 0.225072862410478 0.973197023240975 4125 0.57006769239554 3 3 0 -6.76923686553874 LTS-021 chr10 15556789 15876533 319745 * c(FAM188A, ITGA8) 0 2 0 0.825337252359303 273 0.420750726445169 0 0 0 -Inf LTS-021 chr10 15876534 16547058 670525 * c(FAM188A, PTER) 0.468 1 NA 0.821615696265862 59 0.274527303214823 2 2 0 -5.77514977406921 LTS-021 chr10 16547059 17243480 696422 * c(TRDMT1, C1QL3, RSU1, CUBN, PTER) 0.323955946502608 31 0.188978692546433 0.833616576247228 758 0.423468167645254 2 2 0 -6.7507629298474 LTS-021 chr10 17243481 17401464 157984 * c(TRDMT1, ST8SIA6, VIM) 0 1 NA 0.900997211442654 129 0.298791361348147 3 3 0 -5.76619641938644 LTS-021 chr10 17401465 17813397 411933 * c(ST8SIA6-AS1, ST8SIA6, TMEM236, STAM, HACD1) 0.168134933162565 4 0.225167160127759 0.845065027620061 165 0.36038301020285 3 3 0 -6.8506622631537 LTS-021 chr10 17813398 17839549 26152 * TMEM236 0.233 1 NA 0.451 1 NA NA NA NA NA LTS-021 chr10 17839550 18196475 356926 * c(MRC1, NA, TMEM236) 0.211216429222504 2 0.269407683632075 0.315106971749406 148 0.285657145750257 0 0 0 -7.33500286684859 LTS-021 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.445 1 NA NA NA NA NA LTS-021 chr10 18198201 18835123 636923 * c(SLC39A12-AS1, SLC39A12, NSUN6, MRC1, CACNB2) 0.216176461090272 6 0.24684381026606 0.8313526677969 264 0.481472591093398 3 3 0 -6.77547297636992 LTS-021 chr10 18835124 18940157 105034 * NSUN6 0.465 1 NA 0.915461147026676 45 0.32132234986887 3 3 0 -5.76479456581263 LTS-021 chr10 18940158 19620407 680250 * c(NSUN6, ARL5B) 0.440765282172857 10 0.0494841164190872 0.837340131543376 287 0.37160164689103 2 1 1 -8.09037360693185 LTS-021 chr10 19620408 19676714 56307 * character(0) 0 1 NA 0.814389528779701 25 0.426561980646814 2 2 0 -5.76465155367123 LTS-021 chr10 19676715 25464284 5787570 * c(NEBL-AS1, GPR158-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, KIAA1217, PRTFDC1, ARHGAP21, DNAJC1, BMI1, MIR603, THNSL1, MLLT10, PLXDC2, SPAG6) 0.17471806010269 50 0.222562556214138 0.904758506328646 2459 0.599842627065891 3 3 0 -6.83144760752548 LTS-021 chr10 25464285 25891007 426723 * c(GPR158-AS1, GPR158) 0.0747715231244641 5 0.177991011008983 0.675177364079002 159 0.424465752523899 4 4 0 -7.4516995368707 LTS-021 chr10 25891008 26310403 419396 * c(MYO3A, GPR158) 0.42 1 NA 0.588433942283646 33 0.244999652133334 1 1 0 -5.78606500977836 LTS-021 chr10 26310404 26591270 280867 * c(GAD2, MYO3A) 0.320147666909453 15 0.188337033254849 0.682518561601555 309 0.459841907367479 1 1 0 -6.74673815784228 LTS-021 chr10 26591271 26591569 299 * GAD2 0 1 NA 0.668345497090378 7 0.638786572897619 1 1 0 -5.7644114765605 LTS-021 chr10 26591570 26790340 198771 * c(GAD2, APBB1IP) 0 2 0 0.74753670493298 66 0.465793782717898 0 0 0 -Inf LTS-021 chr10 26790341 26790402 62 * APBB1IP 0 1 NA 2.746 1 NA NA NA NA NA LTS-021 chr10 26790403 27318271 527869 * c(ABI1, ANKRD26, PDSS1, LINC00202-1, APBB1IP, LINC00264, LINC00202-2) 0.142189270453322 6 0.239035074134878 0.934338357093734 343 0.576988562499152 4 4 0 -6.82976461253824 LTS-021 chr10 27318272 27368126 49855 * ANKRD26 0.441 1 NA 1.13181092530578 105 0.629131177904091 4 4 0 -5.76450748674263 LTS-021 chr10 27368127 30315722 2947596 * c(MIR938, LINC00837, MIR5586, YME1L1, MPP7, WAC-AS1, ANKRD26, RAB18, BAMBI, MKX, PTCHD3, LRRC37A6P, PTCHD3P1, WAC, ARMC4, KIAA1462, SVIL, MIR604, LYZL1, MASTL, ACBD5) 0.3086857069682 38 0.206569680052343 0.970765891971427 1556 0.521936094913346 3 2 1 -6.76978572085104 LTS-021 chr10 30315723 31146643 830921 * c(LYZL2, MAP3K8, ZNF438, MTPAP, KIAA1462) 0.31478965398428 11 0.182325034435258 0.781383398900905 387 0.901828097340064 2 2 0 -6.73692485464803 LTS-021 chr10 31146644 31812997 666354 * c(ZNF438, ZEB1-AS1, ZEB1) 0 1 NA 0.651524217088222 97 0.453535441495414 1 1 0 -5.76614136968701 LTS-021 chr10 31812998 33190567 1377570 * c(NA, ITGB1, KIF5B, ZEB1, CCDC7, EPC1, ARHGAP12) 0.122381144824532 9 0.21322353945514 0.898722555432043 693 0.553845108806793 4 4 0 -6.9732244100952 LTS-021 chr10 33190568 33209266 18699 * ITGB1 0.418 1 NA 0.869604416507675 43 0.80513522384887 3 3 0 -5.76451137965833 LTS-021 chr10 33209267 36810841 3601575 * c(LINC00838, CREM, GJD4, CCNY, ITGB1, PARD3, FZD8, CUL2, NRP1) 0.353902888970663 26 0.186363800545723 0.877423130768555 964 0.484976558236371 3 2 1 -6.77465274192395 LTS-021 chr10 36810842 36812667 1826 * character(0) 0.171 1 NA 0.301636131029508 50 0.156621917042153 0 0 0 -5.77395828658306 LTS-021 chr10 36812668 36812681 14 * character(0) NA 0 NA 0.468 1 NA NA NA NA NA LTS-021 chr10 36812682 38645403 1832722 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.297916407896921 23 0.169751550605013 0.816294094239945 585 0.403428271483077 2 2 0 -6.74307549521416 LTS-021 chr10 38645404 38740384 94981 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 0.666746292422295 61 0.302249877625435 1 NA NA -5.76615817833866 LTS-021 chr10 42379869 45869903 3490035 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, BMS1) 0.319427710482614 52 0.192134963680421 0.88943629282328 1507 0.497435914404236 3 2 1 -6.77754952973028 LTS-021 chr10 45869904 45920526 50623 * ALOX5 0 1 NA 0.960590577433137 22 1.38956378047213 3 3 0 -5.76441847265181 LTS-021 chr10 45920527 45953949 33423 * c(MARCH8, ALOX5) 0.133146964061258 9 0.228206290691364 0.979726380137298 143 0.670848645192949 8 8 0 -6.74972152407978 LTS-021 chr10 45953950 45958856 4907 * MARCH8 0.496 1 NA 1.18774103722416 17 0.311841930640962 5 5 0 -5.76447744131383 LTS-021 chr10 45958857 47915891 1957035 * c(AGAP4, MARCH8, NA, FAM21C, PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, NA, LINC00842, NA, NA, HNRNPA1P33, SYT15, ZFAND4, GPRIN2) 0.361112551139943 31 0.159436710064304 0.861074373230258 501 0.828131845009334 3 2 1 -6.74677909141109 LTS-021 chr10 47915892 48371936 456045 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) 0 1 NA 0.705289187185158 77 0.581011757192485 2 2 0 -5.77380978729584 LTS-021 chr10 48371937 49634158 1262222 * c(ZNF488, FRMPD2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, RBP3, NA, NA, FRMPD2B) 0.0299713944561667 10 0.152421783220116 0.880486477445048 437 0.510176732984687 4 4 0 -7.72595831643509 LTS-021 chr10 49634159 49645909 11751 * c(NA, MAPK8) 0.373 1 NA 0.874294198249419 81 0.31042227114006 3 3 0 -5.76478004471397 LTS-021 chr10 49645910 50190652 544743 * c(LRRC18, NA, WDFY4, ARHGAP22) 0.210980755966147 27 0.214811246900324 0.897856918350442 605 0.610529141521815 3 3 0 -6.76491459428895 LTS-021 chr10 50190653 50226804 36152 * c(MIR4294, VSTM4, NA, WDFY4) 0.466 1 NA 0.669143650101299 21 0.198854194012071 1 1 0 -5.7661627081074 LTS-021 chr10 50226805 50534599 307795 * c(FAM170B-AS1, C10orf71, FAM170B, C10orf128, VSTM4, NA) 0.357362999674281 21 0.160565607418632 0.800842502847753 319 0.535019429487585 2 1 1 -6.73327031623918 LTS-021 chr10 50534600 50572508 37909 * c(C10orf71, NA) 0 1 NA 1.28024919776196 23 0.468469119799303 5 5 0 -5.76449049845779 LTS-021 chr10 50572509 51592690 1020182 * c(TIMM23, NA, CHAT, ERCC6, C10orf53, MSMB, NA, OGDHL, DRGX, AGAP7P, SLC18A3, NA, PARGP1, NCOA4, PARG) 0.114028363390396 18 0.204394530707176 0.826447794722983 965 0.577194598465429 4 4 0 -7.04866523697822 LTS-021 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.036 1 NA NA NA NA NA LTS-021 chr10 51603249 51633060 29812 * c(TIMM23, NA, PARG) 0.32 1 NA 0.401700038606409 44 0.374273567712672 0 0 0 -5.76837972804158 LTS-021 chr10 51633061 51827843 194783 * c(NA, FAM21A, AGAP6, NA, PARG) NA 0 NA 1.996 1 NA NA NA NA NA LTS-021 chr10 51827844 54531521 2703678 * c(PRKG1-AS1, DKK1, CSTF2T, SGMS1, A1CF, FAM21A, MBL2, NA, PRKG1, ASAH2, ASAH2B, MIR605) 0.115048140042812 15 0.208857367598081 0.79609432155074 697 0.450583227861366 2 2 0 -7.17207879195878 LTS-021 chr10 54531522 55755340 1223819 * PCDH15 0.355 1 NA 0.738036067992467 285 0.428974891513246 2 2 0 -5.77990046144 LTS-021 chr10 55755341 59956163 4200823 * c(MTRNR2L5, MIR3924, ZWINT, IPMK, PCDH15) 0.437825304812267 5 0.0400037498242352 0.685697944431254 281 0.325631198056852 2 1 1 -8.91593345374147 LTS-021 chr10 59956164 61715655 1759492 * c(MRLN, SLC16A9, FAM13C, IPMK, LINC01553, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL) 0.324537706267495 14 0.181410544661234 0.99597843747574 908 0.521265548297474 3 2 1 -6.76300968048593 LTS-021 chr10 61715656 61716756 1101 * LINC01553 0 1 NA 1.89433796260129 19 0.773641310422978 9 9 0 -5.76441055257282 LTS-021 chr10 61716757 62630418 913662 * c(LINC01553, ANK3, CDK1, RHOBTB1) 0.151698041099814 14 0.214456173959741 0.94114700596861 624 0.566605158897472 4 4 0 -6.84260076270654 LTS-021 chr10 62630419 62630615 197 * RHOBTB1 0.495 1 NA 0.717210250896921 5 0.419999047617968 2 2 0 -5.76441565654237 LTS-021 chr10 62630616 64564934 1934319 * c(MIR548AV, C10orf107, TMEM26, RTKN2, ZNF365, ARID5B, ADO, RHOBTB1) 0.368196803040026 18 0.140886745875539 0.923533885641208 882 0.384807697669858 3 2 1 -6.74072737438162 LTS-021 chr10 64564935 64966691 401757 * c(EGR2, JMJD1C, NRBF2, ADO) 0 1 NA 0.923527032334226 298 0.380971404486662 3 3 0 -5.76485273030297 LTS-021 chr10 64966692 65384870 418179 * c(MIR1296, REEP3, JMJD1C, JMJD1C-AS1) 0 1 NA 1.00403580027438 259 0.522008052640608 3 3 0 -5.76857251904046 LTS-021 chr10 65928619 69666089 3737471 * c(SIRT1, CTNNA3, ANXA2P3, LRRTM3, DNAJC12) 0 4 0 0.651310211505267 267 0.455845343530376 0 0 0 -Inf LTS-021 chr10 69666090 69666550 461 * SIRT1 NA 0 NA 2.051 1 NA NA NA NA NA LTS-021 chr10 69666551 70968314 1301764 * c(DNA2, STOX1, ATOH7, SIRT1, HERC4, KIF1BP, HNRNPH3, SRGN, RUFY2, CCAR1, PBLD, SUPV3L1, SNORD98, DDX50, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.176968988850646 22 0.227691843853871 0.963352344771234 1913 0.563246076224146 4 4 0 -6.79966514378651 LTS-021 chr10 70968315 70992664 24350 * c(SUPV3L1, HKDC1) 0.497 1 NA 1.18334864290135 31 0.875397416353932 5 5 0 -5.76445944841967 LTS-021 chr10 70992665 71583757 591093 * c(COL13A1, C10orf35, TSPAN15, HK1, NEUROG3, TACR2, HKDC1) 0.39129545617312 18 0.150676047339416 1.00238179286822 478 0.462512458620029 4 2 2 -6.77511909482989 LTS-021 chr10 71583758 71664554 80797 * COL13A1 0 1 NA 0.976239273297895 81 0.543473221880558 3 3 0 -5.76466210670651 LTS-021 chr10 71664555 72327119 662565 * c(COL13A1, EIF4EBP2, TYSND1, PALD1, NODAL, PPA1, LRRC20, H2AFY2, SAR1A, NPFFR1, AIFM2) 0.208073846994911 27 0.222740302067772 1.09137671122121 951 0.588231877474271 4 4 0 -6.73712993790793 LTS-021 chr10 72327120 72357720 30601 * c(PALD1, PRF1) 0.465 1 NA 0.977032781172032 35 0.233158463083721 3 3 0 -5.76495032137312 LTS-021 chr10 72357721 72520835 163115 * c(ADAMTS14, PRF1) 0.40500902664225 9 0.158594608987822 1.02198687617733 177 0.469660430256085 4 2 2 -6.7882708129328 LTS-021 chr10 72520836 72520863 28 * ADAMTS14 0 1 NA 3.727 1 NA NA NA NA NA LTS-021 chr10 72520864 72639403 118540 * c(ADAMTS14, TBATA, SGPL1) 0.157288895259739 13 0.230712719576444 0.968295085402214 275 0.704946721466361 6 6 0 -6.75812075785609 LTS-021 chr10 72639404 72648422 9019 * c(PCBD1, SGPL1) 0.46 1 NA 1.04659535764343 61 0.538983333075646 4 4 0 -5.76444359525362 LTS-021 chr10 72648423 73862032 1213610 * c(ANAPC16, UNC5B, C10orf105, PCBD1, ASCC1, SLC29A3, PSAP, CDH23, C10orf54, UNC5B-AS1, CHST3, SPOCK2) 0.384551088701236 45 0.14653735001526 1.04313510897404 1334 0.513939649018345 4 2 2 -6.75911336874194 LTS-021 chr10 73862033 74127438 265406 * c(MIR1256, MICU1, ANAPC16, ASCC1, DDIT4, DNAJB12) 0 1 NA 1.09481345727518 205 0.574559223984035 4 4 0 -5.76441353897314 LTS-021 chr10 74127439 75276633 1149195 * c(MIR1256, MIR4676, MICU1, ECD, MSS51, CFAP70, USP54, OIT3, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, PLA2G12B, MCU) 0.0122008627254622 13 0.0854238302186853 0.966488380432875 1275 0.55204983432726 8 8 0 -8.63378221268163 LTS-021 chr10 75276634 75404647 128014 * c(USP54, MYOZ1, SYNPO2L) 0.393 1 NA 1.06250392591806 159 0.705383719929355 4 4 0 -5.76452517313196 LTS-021 chr10 75404648 78977190 3572543 * c(ZNF503-AS2, CHCHD1, COMTD1, ADK, SAMD8, FUT11, ZSWIM8, KAT6B, ZNF503-AS1, AP3M1, GLUD1P3, DUPD1, KCNMA1, C10orf55, DUSP13, PLAU, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, C10orf11, ZNF503, NDST2, SEC24C) 0.378642565148476 27 0.142435410463291 1.00722273482521 2111 0.503313880108594 3 2 1 -6.79180331727168 LTS-021 chr10 78977191 79551241 574051 * c(KCNMA1, DLG5) 0 1 NA 0.858866063892806 65 0.422175500099917 3 3 0 -5.77964833769161 LTS-021 chr10 79551242 79762112 210871 * c(DLG5-AS1, POLR3A, DLG5) 0.146535708535773 9 0.209478519185142 1.17303381619783 361 0.641198846983313 6 6 0 -6.75781738613582 LTS-021 chr10 79762113 79793688 31576 * c(POLR3A, RPS24) 0.5 1 NA 0.986735833225948 83 0.376041384468245 3 3 0 -5.76474341027578 LTS-021 chr10 79793689 81272881 1479193 * c(LINC00856, PPIF, EIF5AL1, ZCCHC24, ZMIZ1-AS1, LINC00595, ZMIZ1, RPS24) 0.385187829023673 14 0.167309806731618 0.976724861526656 500 0.510137254806472 3 2 1 -6.7584268841204 LTS-021 chr10 81272882 81274035 1154 * EIF5AL1 NA 0 NA 1.00883889412655 20 0.635925343185238 3 NA NA -5.76441901023299 LTS-021 chr10 81274036 81275506 1471 * EIF5AL1 NA 0 NA 0.384025307348188 40 0.166791669148779 0 NA NA -5.76596345624172 LTS-021 chr10 81275507 81316492 40986 * c(EIF5AL1, SFTPA2) 0.207 1 NA 0.823024517745605 44 0.471507305358403 2 2 0 -5.76465039651041 LTS-021 chr10 81316493 81851731 535239 * c(BMS1P21, TMEM254-AS1, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.208031225908581 10 0.209268594023194 0.714533379153836 256 0.596456013809328 3 3 0 -6.83524618162942 LTS-021 chr10 81851732 81851901 170 * TMEM254 0 1 NA 0.666199897132872 3 0.698177627828334 1 1 0 -5.76441069982058 LTS-021 chr10 81851902 82004265 152364 * c(PLAC9, ANXA11, LINC00857, TMEM254) 0 1 NA 0.960791442343086 213 0.487567558274394 3 3 0 -5.76461768694245 LTS-021 chr10 82004266 82009627 5362 * character(0) NA 0 NA 0.271981378592713 76 0.298050329848512 0 NA NA -5.77600182759375 LTS-021 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.005 1 NA NA NA NA NA LTS-021 chr10 82012432 82405031 392600 * c(DYDC1, SH2D4B, MAT1A, TSPAN14, FAM213A, DYDC2) 0 9 0 0.937869316175606 453 0.660502370169725 0 0 0 -Inf LTS-021 chr10 82405032 82405083 52 * SH2D4B 0.396 1 NA 0.652299634933432 3 0.427344123628722 1 1 0 -5.76441029607064 LTS-021 chr10 82405084 88426012 6020929 * c(GRID1-AS1, NRG3, LINC00858, WAPL, LRIT1, GHITM, GRID1, LRIT2, SH2D4B, C10orf99, MIR346, CCSER2, RGR, CDHR1, OPN4) 0.199001932304577 25 0.231029420925849 0.882345641173761 1187 0.524542253523189 3 3 0 -6.82351997813428 LTS-021 chr10 88426013 88492235 66223 * c(LDB3, OPN4) 0.476 1 NA 1.04345503340307 115 0.539124068230906 4 4 0 -5.76469176372108 LTS-021 chr10 88492236 90425396 1933161 * c(KLLN, MIR4678, ADIRF, LDB3, AGAP11, LIPJ, CFL1P1, GLUD1, LINC00863, FAM35A, RNLS, PTEN, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, LIPF, PAPSS2, MINPP1) 0.386323619880637 24 0.157154399985437 0.966138321458739 1224 0.524214983975115 3 2 1 -6.76092695035381 LTS-021 chr10 90425397 90433472 8076 * LIPF 0 1 NA 0.783609932272575 33 0.510210885543687 2 2 0 -5.76441024798103 LTS-021 chr10 90433473 90967052 533580 * c(FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, LIPM, FAS, STAMBPL1, ACTA2, LIPK, LIPN, LIPF, CH25H) 0.175207025722352 16 0.21797789452144 0.830968372817359 502 0.54187636941797 3 3 0 -6.8370961386047 LTS-021 chr10 90967053 90973676 6624 * c(LIPA, CH25H) 0.352 1 NA 1.56949234120742 11 0.63805365975541 7 7 0 -5.76441143907191 LTS-021 chr10 90973677 91179829 206153 * c(IFIT5, IFIT2, IFIT1, IFIT3, LIPA, IFIT1B) 0.404133532831238 18 0.111354656288474 0.922939486300288 376 0.367188695794341 3 2 1 -6.8498859997101 LTS-021 chr10 91179830 91191521 11692 * c(IFIT5, SLC16A12) 0 1 NA 1.22323508209489 45 0.617380632555432 5 5 0 -5.76441590611735 LTS-021 chr10 91191522 93624760 2433239 * c(HECTD2-AS1, LINC00502, RPP30, NUDT9P1, HECTD2, ANKRD1, FLJ37201, HTR7, SLC16A12, MIR107, PANK1, PPP1R3C, LINC00865, TNKS2, PCGF5, KIF20B) 0.106257465417255 7 0.198553459276025 0.9234774924956 1203 0.490301443421432 3 3 0 -7.07129556517059 LTS-021 chr10 93624761 94389982 765222 * c(MARK2P9, FGFBP3, CPEB3, IDE, KIF11, MARCH5, TNKS2, BTAF1) 0.0941082435333657 14 0.179329888170402 1.11805318619882 791 0.618397975039516 6 6 0 -6.92718605290662 LTS-021 chr10 94389983 94414263 24281 * KIF11 0.43 1 NA 1.15929051357805 61 0.262513530226372 4 4 0 -5.76516804241591 LTS-021 chr10 94414264 95241847 827584 * c(CYP26A1, MYOF, HHEX, CYP26C1, KIF11, EXOC6) 0.259279274476386 20 0.211368871880417 1.0887489700099 698 0.709408720080768 4 4 0 -6.74743994687152 LTS-021 chr10 95241848 95279506 37659 * c(MYOF, CEP55) 0.45834012539225 6 0.0305117463719576 0.874159647290177 58 0.300267650317148 2 1 1 -10.2096047464598 LTS-021 chr10 95279507 95335925 56419 * c(FFAR4, CEP55) 0 1 NA 0.79757801505362 43 0.634132640683372 2 2 0 -5.76442958530517 LTS-021 chr10 95335926 96341254 1005329 * c(PLCE1-AS1, FRA10AC1, SLC35G1, TBC1D12, PIPSL, HELLS, FFAR4, PLCE1, PDE6C, RBP4, NOC3L, LGI1) 0.190799631643209 23 0.229053646822157 0.933708502908879 1107 0.512123066820981 3 3 0 -6.78621139758859 LTS-021 chr10 96341255 96361776 20522 * HELLS 0.453 1 NA 1.01532884310989 55 0.214566061185814 4 4 0 -5.76582388267889 LTS-021 chr10 96361777 96480220 118444 * c(CYP2C19, CYP2C18, HELLS) NA 0 NA 1.24237546244878 27 0.782992540889323 5 NA NA -5.76441068697207 LTS-021 chr10 96480221 96484088 3868 * c(CYP2C19, CYP2C18) NA 0 NA 0.626 1 NA NA NA NA NA LTS-021 chr10 96484089 96954470 470382 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18) 0.429769581427954 3 0.0397156560229506 0.571573540706009 206 0.325580355613119 0 0 0 -8.3225645609398 LTS-021 chr10 96954471 96961220 6750 * ACSM6 NA 0 NA 2.118 1 NA NA NA NA NA LTS-021 chr10 96961221 97050555 89335 * c(ACSM6, PDLIM1) 0.438696864322467 7 0.0362392841304256 1.06311405441985 103 0.527338818581655 4 2 2 -8.81754802322308 LTS-021 chr10 97050556 97073998 23443 * c(SORBS1, PDLIM1) 0 1 NA 0.938784664960038 57 0.57940045875371 3 3 0 -5.76441013480729 LTS-021 chr10 97073999 98985886 1911888 * c(C10orf131, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, SORBS1, PIK3AP1, DNTT, TCTN3, C10orf12, BLNK, CC2D2B, CCNJ, TM9SF3, ALDH18A1, SLIT1, TLL2, ENTPD1-AS1, LCOR, ARHGAP19, OPALIN, ENTPD1, ZNF518A) 0.0635664073403428 40 0.170707500248307 0.937656825457362 2416 0.567933637654774 4 4 0 -7.31649461420866 LTS-021 chr10 98985887 99003811 17925 * c(ARHGAP19-SLIT1, ARHGAP19) 0.5 1 NA 0.765445429737288 17 0.312346609412948 2 2 0 -5.76448419945479 LTS-021 chr10 99003812 100152373 1148562 * c(FRAT1, ARHGAP19-SLIT1, MIR5692C2, HOGA1, MORN4, ZFYVE27, RRP12, FRAT2, ANKRD2, R3HCC1L, GOLGA7B, C10orf62, EXOSC1, PGAM1, CRTAC1, PI4K2A, AVPI1, MMS19, SFRP5, UBTD1, MARVELD1, LOXL4, ZDHHC16, PYROXD2, ARHGAP19) 0.372000850398583 51 0.168630939407602 0.988662914902078 1609 0.50963352569073 3 2 1 -6.74655577769257 LTS-021 chr10 100152374 100174929 22556 * c(MIR1287, PYROXD2) 0 1 NA 1.07326202258341 45 0.372906517383473 4 4 0 -5.76443900820873 LTS-021 chr10 100174930 102309685 2134756 * c(DNMBP-AS1, MIR4685, ERLIN1, CHUK, ABCC2, COX15, CPN1, NKX2-3, DNMBP, SEC31B, CNNM1, GOT1, BLOC1S2, HPS1, NDUFB8, CUTC, CWF19L1, HIF1AN, ENTPD7, HPSE2, SCD, SNORA12, WNT8B, SLC25A28, PYROXD2, OLMALINC, PKD2L1) 0.141596656827061 34 0.20778558510184 0.953062080244401 2231 0.495248372828854 3 3 0 -6.92068988949451 LTS-021 chr10 102309686 102505643 195958 * c(PAX2, HIF1AN) 0.413 1 NA 0.580099943532857 9 0.433060907956375 1 1 0 -5.76907191076595 LTS-021 chr10 102505644 103799758 1294115 * c(TLX1NB, KCNIP2-AS1, MIR3158-1, MIR3158-2, NPM3, LBX1, MGEA5, FGF8, DPCD, POLL, KCNIP2, TLX1, LBX1-AS1, PAX2, SLF2, C10orf2, SEMA4G, FBXW4, MIR608, C10orf76, PDZD7, KAZALD1, SFXN3, LZTS2, MRPL43, BTRC) 0.349609690636753 51 0.172469341407365 1.0142002033701 1949 0.569338637428196 4 2 2 -6.74732258569862 LTS-021 chr10 103799759 103897787 98029 * c(PPRC1, C10orf76, HPS6, LDB1) 0 1 NA 1.02931667089904 133 0.413472634527732 4 4 0 -5.76560880587191 LTS-021 chr10 103897788 104140437 242650 * c(PPRC1, PITX3, ELOVL3, GBF1, NOLC1) 0 4 0 0.952357926263397 510 0.481954089755362 0 0 0 -Inf LTS-021 chr10 104140438 104574757 434320 * c(RPARP-AS1, ACTR1A, SFXN2, ARL3, NFKB2, SUFU, WBP1L, PSD, MIR146B, CUEDC2, FBXL15, MFSD13A, C10orf95, TRIM8, GBF1) 0.0252146663870772 11 0.144122422708171 1.18403712380859 1031 0.69577734500147 11 11 0 -7.16872088511903 LTS-021 chr10 104574758 105086393 511636 * c(BORCS7-ASMT, BORCS7, CYP17A1, NT5C2, CNNM2, WBP1L, AS3MT, RPEL1, PCGF6, INA) 0.0358112969605196 5 0.041148511516214 0.935442917305778 613 0.45928851137639 18 18 0 -9.08865234658221 LTS-021 chr10 105086394 105127708 41315 * PCGF6 0.422 1 NA 1.21988538044872 37 0.476532577372521 5 5 0 -5.76445579055123 LTS-021 chr10 105127709 105781532 653824 * c(MIR1307, SH3PXD2A-AS1, CALHM3, PDCD11, CALHM1, CALHM2, TAF5, OBFC1, USMG5, NEURL1, SH3PXD2A, SLK) 0.421262543894972 19 0.108730500033003 0.999771502476701 1023 0.478770405199284 4 2 2 -6.94567105458271 LTS-021 chr10 105781533 105786777 5245 * SLK 0 1 NA 0.836243654024019 35 0.369064811779879 2 2 0 -5.76450048558349 LTS-021 chr10 105786778 106116611 329834 * c(MIR936, MIR4482, GSTO2, SFR1, COL17A1, CFAP58, MIR609, CFAP43, ITPRIP, GSTO1, SLK) 0.221019076095123 16 0.217503936745982 0.954760213507886 794 0.494546052963089 4 4 0 -6.74795184789258 LTS-021 chr10 106116612 111629819 5513208 * c(SORCS1, CFAP58, SORCS3, XPNPEP1) 0.0989422877642542 15 0.209659201926319 0.727542096405036 515 0.466964742382372 2 2 0 -7.32808659621641 LTS-021 chr10 111629820 111630520 701 * XPNPEP1 NA 0 NA 0.864 1 NA NA NA NA NA LTS-021 chr10 111630521 111630535 15 * XPNPEP1 0 1 NA 2.256 1 NA NA NA NA NA LTS-021 chr10 111630536 111646147 15612 * XPNPEP1 0.463 1 NA 1.08180630440815 49 0.372409502543952 4 4 0 -5.76441596997504 LTS-021 chr10 111646148 112543217 897070 * c(ADD3-AS1, SMNDC1, ADD3, DUSP5, RBM20, MXI1, XPNPEP1, SMC3) 0.450596820036275 12 0.0366840523520739 1.00629598732036 579 0.690908903138345 4 2 2 -9.22259874277601 LTS-021 chr10 112543218 112557397 14180 * RBM20 0 1 NA 0.85623208435866 19 0.485710464135538 2 2 0 -5.76467784132939 LTS-021 chr10 112557398 115385905 2828508 * c(MIR4295, MIR4680, VTI1A, ADRA2A, PDCD4, RBM20, PDCD4-AS1, HABP2, GUCY2GP, NRAP, ACSL5, GPAM, ZDHHC6, RPL13AP6, TCF7L2, TECTB, SHOC2, BBIP1) 0.191200485287885 21 0.228228373512564 0.959210930144041 1450 0.559217804294418 3 3 0 -6.78843504977991 LTS-021 chr10 115385906 115401081 15176 * NRAP 0.387 1 NA 0.77670906314892 47 0.42238630927691 2 2 0 -5.76441666632147 LTS-021 chr10 115401082 115614740 213659 * c(MIR4483, NHLRC2, NRAP, PLEKHS1, CASP7, DCLRE1A) 0.420895588276173 10 0.146828547027553 0.882461145146673 372 0.4240837753443 2 1 1 -6.85237782380871 LTS-021 chr10 115614741 115672254 57514 * NHLRC2 0 1 NA 0.982203190132593 139 0.520883255803663 3 3 0 -5.76467080836965 LTS-021 chr10 115672255 116038458 366204 * c(MIR2110, ADRB1, VWA2, NHLRC2, CCDC186, TDRD1) 0.115073198984771 10 0.215851286254629 0.955350682793115 500 0.611958284103554 5 5 0 -6.86679802449145 LTS-021 chr10 116038459 116050008 11550 * VWA2 0.469 1 NA 1.02039096133461 53 0.756777529127393 4 4 0 -5.76446565673796 LTS-021 chr10 116050009 118031791 1981783 * c(TRUB1, ATRNL1, GFRA1, VWA2, ABLIM1, FAM160B1, AFAP1L2) 0.359832068993843 25 0.168694269809815 0.891074763775186 1025 0.454032529043346 3 2 1 -6.74922883089572 LTS-021 chr10 118031792 118203899 172108 * c(PNLIPRP3, GFRA1, CCDC172) 0 1 NA 0.713126131303509 73 0.426075279094081 2 2 0 -5.76972669395735 LTS-021 chr10 118203900 120829151 2625252 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, CACUL1, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, PRLHR, KCNK18, NANOS1, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, FAM204A, SNORA19, SLC18A2, EIF3A) 0.125429500058279 35 0.20487915273861 0.951304030734283 1898 0.485481321003474 3 3 0 -6.97986567529265 LTS-021 chr10 120829152 120914692 85541 * c(SFXN4, EIF3A) 0.437 1 NA 1.05449961860973 121 0.567987193454548 4 4 0 -5.76460346979202 LTS-021 chr10 120914693 123239112 2324420 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, PLPP4, FGFR2, INPP5F, WDR11-AS1, GRK5, WDR11, RGS10, TIAL1, MCMBP, BAG3) 0.406843295327416 30 0.121063434497844 0.980308799510973 1126 0.465062058664556 3 2 1 -6.85496469031058 LTS-021 chr10 123239113 123500980 261868 * FGFR2 0 1 NA 0.965336764158928 155 0.575765464007142 3 3 0 -5.76478041943092 LTS-021 chr10 123500981 124793864 1292884 * c(MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, DMBT1, FAM24B, ACADSB, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, HTRA1, PLEKHA1, IKZF5, C10orf88) 0.199079677896513 23 0.229565193062042 0.887892247625142 1312 0.516477512753866 3 3 0 -6.78297401130571 LTS-021 chr10 124793865 124813543 19679 * ACADSB 0.494 1 NA 0.796058302264605 49 0.305985550823769 2 2 0 -5.76443241927657 LTS-021 chr10 124813544 126721441 1907898 * c(MIR4296, CPXM2, CTBP2, FAM175B, GPR26, HMX2, HMX3, ACADSB, NKX1-2, METTL10, OAT, CHST15, ZRANB1, LHPP, BUB3, FAM53B) 0.330227110596378 36 0.171795584972004 1.01342948318145 1357 0.542547249070647 4 3 1 -6.75499523645997 LTS-021 chr10 126721442 127350624 629183 * c(TEX36-AS1, CTBP2, TEX36) 0 1 NA 0.980099250827155 43 0.398001828073065 3 3 0 -5.76883978488101 LTS-021 chr10 127350625 129536906 2186282 * c(MIR4484, LINC00601, FANK1-AS1, C10orf90, MMP21, DOCK1, EDRF1, LOC283038, TEX36, FLJ37035, FOXI2, DHX32, BCCIP, NPS, FAM196A, UROS, ADAM12, FANK1) 0.201431909925629 38 0.198739249957537 0.930124941116522 1396 0.560021419628059 3 3 0 -6.78374733877942 LTS-021 chr10 129536907 129763277 226371 * c(CLRN3, FOXI2, PTPRE) 0.463 1 NA 0.828715459461899 79 0.291505893835551 2 2 0 -5.76898120660524 LTS-021 chr10 129763278 129901669 138392 * c(MKI67, PTPRE) 0.228718021327513 5 0.246701236316318 0.895098306529122 289 0.602900840911297 4 4 0 -6.74208856310661 LTS-021 chr10 129901670 129906903 5234 * MKI67 0.455729981429101 4 0.0521943483530545 0.701422498683747 102 0.190740428554688 0 0 0 -8.33945967329323 LTS-021 chr10 129906904 129910262 3359 * MKI67 0 1 NA 0.76362017423263 29 0.839986585044182 2 2 0 -5.76441242298432 LTS-021 chr10 129910263 132944879 3034617 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, EBF3, TCERG1L, LINC00959, MGMT, MKI67) 0.0702781244156937 9 0.133678719323608 0.705815965579365 399 0.405257328499588 2 2 0 -8.2510134930807 LTS-021 chr10 132944880 133608210 663331 * c(TCERG1L, LINC01164) 0.237 1 NA 0.665446953301296 45 0.353504493992265 1 1 0 -5.77268027404341 LTS-021 chr10 133608211 134151034 542824 * c(DPYSL4, JAKMIP3, STK32C, LINC01164, PPP2R2D, BNIP3, LRRC27) 0.306859519611686 34 0.0837255564669719 0.585815093724811 481 0.327607476492595 1 1 0 -6.86240131697569 LTS-021 chr10 134151035 134189579 38545 * LRRC27 0 1 NA 0.597324931984177 89 0.284575761251246 1 1 0 -5.76533796091361 LTS-021 chr10 134189580 134693137 503558 * c(C10orf91, PWWP2B, INPP5A, CFAP46, LRRC27, NKX6-2) 0.0607761516266019 10 0.139845986713956 0.714631663855882 419 0.431952948326295 5 5 0 -7.74198798331838 LTS-021 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.317 1 NA NA NA NA NA LTS-021 chr10 134694406 134756359 61954 * CFAP46 0 2 0 0.318888986558066 167 0.308356730728808 0 0 0 -Inf LTS-021 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.289 1 NA NA NA NA NA LTS-021 chr10 134884462 135039082 154621 * c(ADGRA1, KNDC1) 0.195313819629935 16 0.155322889491536 0.499609610820481 364 0.367721774836269 3 3 0 -7.09422387558169 LTS-021 chr10 135039083 135233967 194885 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, CALY, MIR202, UTF1, KNDC1, MTG1) 0.0273572034533699 9 0.139 0.77783670994273 679 0.435153167753845 8 8 0 -7.5213336982002 LTS-021 chr10 135233968 135438955 204988 * c(CYP2E1, SPRNP1, FRG2B, SPRN, SCART1, MTG1, SYCE1) 0.204687803590319 14 0.195213042259302 0.598862771612423 376 0.48821232981022 3 3 0 -6.88203191344058 LTS-021 chr10 135438956 135473116 34161 * FRG2B NA 0 NA 0.792686466706073 9 0.812507692271279 2 NA NA -5.7644126767753 LTS-021 chr11 193025 193797 773 * SCGB1C1 0.135 1 NA 1.32494472628663 9 0.352617986558321 6 6 0 -5.76442094384199 LTS-021 chr11 193798 1010691 816894 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.23820279214843 125 0.12958094842047 0.716926278633886 2973 0.44159262895975 2 2 0 -6.88794255417189 LTS-021 chr11 1010692 1010784 93 * AP2A2 NA 0 NA 0.178 1 NA NA NA NA NA LTS-021 chr11 1010785 1284227 273443 * c(AP2A2, MUC2, MUC6, MUC5B) 0.288539619860508 124 0.128381187667707 0.518847785713375 1164 0.372104757392255 1 1 0 -6.88636461105825 LTS-021 chr11 1284228 1284290 63 * character(0) NA 0 NA 0.653 1 NA NA NA NA NA LTS-021 chr11 1284291 1852909 568619 * c(FAM99B, CTSD, DUSP8, TOLLIP-AS1, KRTAP5-AS1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, KRTAP5-5, KRTAP5-2, KRTAP5-6, TOLLIP, MOB2, SYT8, BRSK2) 0.157372941037833 23 0.130209089984626 0.652158335360702 653 0.36930860453139 3 3 0 -7.39430992038194 LTS-021 chr11 1852910 1852914 5 * SYT8 NA 0 NA 0.396 1 NA NA NA NA NA LTS-021 chr11 1852915 1891639 38725 * c(MIR4298, LSP1, TNNI2, SYT8) 0.210380313541384 8 0.204800251115917 0.4025298844779 142 0.284965431190047 3 3 0 -6.96544173012328 LTS-021 chr11 1891640 4185675 2294036 * c(MIR675, MRPL23-AS1, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, IGF2, INS, KCNQ1, MRGPRG, RHOG, LSP1, ART1, ASCL2, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, SNORA54, STIM1, TH, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, CARS, CD81) 0.180627721076652 60 0.140909229708168 0.701961343549221 2516 0.374127225556153 2 2 0 -7.25815163744569 LTS-021 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.332 1 NA NA NA NA NA LTS-021 chr11 4229252 4965429 736178 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, TRIM68, TRIM21, OR51G1, OR51G2, OR51E2) 0.254587318358468 30 0.143787554814526 0.459803790982906 782 0.292017430141147 0 0 0 -7.03718654990836 LTS-021 chr11 4965430 4967266 1837 * character(0) NA 0 NA 0.154 1 NA NA NA NA NA LTS-021 chr11 4967267 4976978 9712 * c(OR51A4, OR51A2) NA 0 NA 0.156717136620949 59 0.120497720973426 0 NA NA -6.22794046354447 LTS-021 chr11 4976979 5009215 32237 * character(0) NA 0 NA 0.731 1 NA NA NA NA NA LTS-021 chr11 5009216 5624733 615518 * c(TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, TRIM6-TRIM34, UBQLN3, MMP26, OR51B4, OR51B2) 0.221600078682923 46 0.153326466449891 0.405416534969365 851 0.296416907899776 0 0 0 -7.28907059203522 LTS-021 chr11 5624734 5732092 107359 * c(TRIM22, TRIM6, HBG2, TRIM6-TRIM34, TRIM34, TRIM5) 0.286473356440721 10 0.128710873234894 0.639368085768781 321 0.401565616037585 2 2 0 -6.756661317305 LTS-021 chr11 5732093 5755335 23243 * c(TRIM22, TRIM5) NA 0 NA 0.324 1 NA NA NA NA NA LTS-021 chr11 5755336 6232897 477562 * c(TRIM22, OR52W1, OR56A4, OR56A1, C11orf42, OR56B4, OR52B2, OR52L1, OR56B1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, FAM160A2, TRIM5) 0.204120616349167 34 0.114076826225312 0.360286060197402 532 0.272250310890575 0 0 0 -7.96312808465136 LTS-021 chr11 6232898 6566281 333384 * c(TRIM3, PRKCDBP, CNGA4, DNHD1, ARFIP2, TIMM10B, APBB1, HPX, SMPD1, FAM160A2, CCKBR) 0.115819683485369 20 0.14572147188531 0.694124216664138 894 0.382687515253177 4 4 0 -7.32856042625645 LTS-021 chr11 6566282 6616552 50271 * DNHD1 0 2 0 0.457475212457613 286 0.328848100803451 0 0 0 -Inf LTS-021 chr11 6616553 6735905 119353 * c(TPP1, RRP8, ILK, GVINP1, MRPL17, TAF10, DCHS1) 0.153806557125124 7 0.146193772260035 0.700628304860696 697 0.310351190349909 4 4 0 -7.0207133787417 LTS-021 chr11 6735906 6978238 242333 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, OR2AG2, OR10A2, GVINP1, ZNF215, OR6A2) 0.177402562711203 17 0.175504671464558 0.379655326685325 375 0.328735436691724 0 0 0 -7.38136231348663 LTS-021 chr11 6978239 8707481 1729243 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, RBMXL2, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, OR10A6, LMO1, CYB5R2, RPL27A, SNORA3A, STK33, SNORA3B, TUB, ZNF214, ZNF215, RIC3, PPFIBP2, EIF3F, TRIM66) 0.196679143772448 71 0.138153999454928 0.573912997817547 1904 0.382645622803401 1 1 0 -7.40858501418454 LTS-021 chr11 8707482 8707595 114 * RPL27A NA 0 NA 0.687 1 NA NA NA NA NA LTS-021 chr11 8707596 12474487 3766892 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, RPL27A, LOC644656, ST5, SNORA23, SNORD97, ZBED5-AS1, WEE1, ZNF143, SBF2, MICALCL, MICAL2, CTR9) 0.232927190123797 75 0.135674440753864 0.724318319066145 3315 0.384695315492946 2 2 0 -6.97564631618338 LTS-021 chr11 12474488 12902574 428087 * c(PARVA, TEAD1) 0 1 NA 0.703292168823937 167 0.248956435755864 1 1 0 -5.81088163922242 LTS-021 chr11 12902575 12962281 59707 * TEAD1 0.123028573476788 4 0.203100960115899 0.723715431451236 119 0.342664237499359 5 5 0 -6.90793092235319 LTS-021 chr11 12962282 15099071 2136790 * c(LINC00958, SPON1, CYP2R1, COPB1, RRAS2, ARNTL, PDE3B, PSMA1, PTH, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10) 0.0761040622108459 12 0.141031159247834 0.564941171032517 1051 0.325184115603488 1 1 0 -8.50680446718948 LTS-021 chr11 15099072 15133901 34830 * CALCB NA 0 NA 1.132 1 NA NA NA NA NA LTS-021 chr11 15133902 17553103 2419202 * c(USH1C, OR7E14P, C11orf58, PLEKHA7, NCR3LG1, KCNJ11, INSC, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8) 0.152535300579186 51 0.155369474883229 0.718071500238828 1558 0.822065889404494 3 3 0 -7.15391686093483 LTS-021 chr11 17553104 17554771 1668 * USH1C NA 0 NA 0.407 1 NA NA NA NA NA LTS-021 chr11 17554772 18291505 736734 * c(SAA2-SAA4, USH1C, SAAL1, MRGPRX3, MRGPRX4, SERGEF, OTOG, KCNC1, MYOD1, LOC494141, SAA1, SAA2, SAA3P, SAA4, TPH1) 0.156569856788292 25 0.171453103403428 0.543464517478077 1147 0.376133946581898 1 1 0 -7.44265085400283 LTS-021 chr11 18291506 19372602 1081097 * c(SPTY2D1-AS1, HPS5, MRGPRX2, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, IGSF22, GTF2H1, LDHA, LDHC, ZDHHC13, UEVLD, SAA1, TSG101, E2F8, CSRP3, PTPN5, NAV2) 0.109943311756066 36 0.150930878744974 0.654673864800362 1399 0.422612382045776 2 2 0 -7.67862738264703 LTS-021 chr11 19372603 19596746 224144 * c(NAV2-AS5, NAV2-AS4, NAV2) NA 0 NA 2.624 1 NA NA NA NA NA LTS-021 chr11 19596747 20143135 546389 * c(LOC100126784, MIR4486, MIR4694, NAV2) 0.20227502856858 11 0.13267362552177 1.76546617195737 402 0.694601492125604 9 8 1 -6.74421528716737 LTS-021 chr11 20143136 20177679 34544 * NAV2 NA 0 NA 0.177 1 NA NA NA NA NA LTS-021 chr11 20177680 26677689 6500010 * c(CCDC179, PRMT3, HTATIP2, DBX1, MUC15, ANO5, FANCF, SVIP, GAS2, LUZP2, NELL1, SLC17A6, ANO3, SLC6A5) 0.130978913277117 34 0.183428450451225 1.02928881757379 1412 0.511165220571937 4 4 0 -6.94307276589203 LTS-021 chr11 26677690 26677796 107 * ANO3 0.303 1 NA 0.972466411330957 3 0.623940969430068 3 3 0 -5.76441033834402 LTS-021 chr11 26677797 26730853 53057 * c(SLC5A12, ANO3) 0.296143064460195 12 0.153020175932536 1.03816905966249 248 0.460543417343246 5 4 1 -6.74142228659795 LTS-021 chr11 26730854 36518825 9787972 * c(C11orf91, DCDC5, MIR3973, MIR1343, HIPK3, LINC00678, EIF3M, DNAJC24, ARL14EP, LDLRAD3, CSTF3, SLC5A12, METTL15, IMMP1L, ELF5, FJX1, FSHB, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, DCDC1, KCNA4, FIBIN, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, BDNF-AS, PAX6, APIP, WT1-AS, TRIM44, NAT10, LIN7C, TCP11L1, LGR4, RCN1, BDNF, SLC1A2, MIR610, TRAF6, MPPED2, WT1, PRRG4, QSER1, NA NA NA NA NA NA NA NA NA LTS-021 PRR5L, PDHX, KIF18A, BBOX1, CAT, CCDC34, DEPDC7, CD44, CD59) 0.204953937499731 128 0.194640992805258 1.1972888935822 5812 0.697017349640385 5 5 0 -6.75179062733995 LTS-021 NA NA NA NA LTS-021 chr11 36518826 43775579 7256754 * c(MIR670, LOC100507205, C11orf74, HNRNPKP3, MIR129-2, HSD17B12, TTC17, LRRC4C, RAG1, RAG2, TRAF6, API5) 0.215373830841081 13 0.208665263778359 0.86433925993989 655 0.539089251172515 3 3 0 -6.85986555627028 LTS-021 chr11 43775580 43776481 902 * HSD17B12 0.434 1 NA 0.69149379748241 7 0.594672699093896 1 1 0 -5.76442234926607 LTS-021 chr11 43776482 44618560 842079 * c(ALKBH3-AS1, EXT2, ALKBH3, CD82, C11orf96, ACCSL, HSD17B12, ALX4, SEC14L1P1, ACCS) 0.388089231431569 17 0.15344262675633 0.882940755387856 632 0.418970751005243 3 2 1 -6.77231789465615 LTS-021 chr11 44618561 44621664 3104 * CD82 NA 0 NA 1.112 1 NA NA NA NA NA LTS-021 chr11 44621665 44640640 18976 * CD82 0.4662228189487 2 0.0127279220613578 0.990986057665895 32 0.394951589520179 4 2 2 -14.9727116881308 LTS-021 chr11 44640641 44641579 939 * CD82 0 1 NA 1.09581507062459 13 0.761696301953906 4 4 0 -5.76441014702158 LTS-021 chr11 44641580 47814131 3172552 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, LARGE2, CRY2, C11orf94, DDB2, F2, LOC221122, NUP160, FNBP4, MTCH2, HARBI1, PACSIN3, DKFZp779M0652, ARHGAP1, FAM180B, LRP4, MDK, MYBPC3, NDUFS3, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PRDM11, PSMC3, SYT13, RAPSN, SPI1, SNORD67, C11orf49, ZNF408, AGBL2, ARFGAP2, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, NA NA NA NA NA NA NA NA NA LTS-021 PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.119952769512101 48 0.206741538713891 1.00108766688309 4356 0.522820911709911 4 4 0 -6.9403428440605 LTS-021 NA NA NA NA LTS-021 chr11 47814132 47857224 43093 * NUP160 0 2 0 0.813167974616 104 0.478756240294953 0 0 0 -Inf LTS-021 chr11 47857225 48157869 300645 * c(NUP160, PTPRJ) 0.438 1 NA 0.752544386042969 139 0.390267950507877 2 2 0 -5.76659095018949 LTS-021 chr11 48157870 48388717 230848 * c(OR4X2, OR4B1, OR4C3, OR4S1, OR4X1, OR4C45, PTPRJ) 0.375436667146653 105 0.0874669241514346 0.725262263561899 381 0.605740462139857 2 1 1 -6.76047808502176 LTS-021 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.652 1 NA NA NA NA NA LTS-021 chr11 48388749 49080616 691868 * c(TRIM49B, OR4A47, TRIM64C) 0.359577995058892 6 0.188473870868086 0.496670650140102 91 0.327629492709806 0 0 0 -6.73803634816156 LTS-021 chr11 49080617 49138972 58356 * TRIM64C 0 1 NA 0.575367492848707 11 0.661349721815512 1 1 0 -5.76512427505835 LTS-021 chr11 49138973 49729467 590495 * c(FOLH1, LOC440040) 0.165178321021089 12 0.210797242089946 0.668562189599831 240 0.526395751986284 3 3 0 -6.99399432850399 LTS-021 chr11 49729468 51527703 1798236 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 0.491289770609593 125 0.191160906045143 0 NA NA -5.78273602236406 LTS-021 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.38 1 NA 0.388155310849806 21 0.150874277526183 0 0 0 -5.85181360573753 LTS-021 chr11 55111585 56955636 1844052 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.308186023600643 75 0.171397991094853 0.527027281479568 1228 0.35268498494099 0 0 0 -6.86279463561165 LTS-021 chr11 56955637 57081197 125561 * c(APLNR, LRRC55, TNKS1BP1) 0.320093251225625 7 0.215547254790264 0.992172354510577 226 0.47847771599114 4 3 1 -6.73880398298305 LTS-021 chr11 57081198 57099682 18485 * c(SSRP1, TNKS1BP1) 0 1 NA 1.27323442850118 91 0.546338974419247 5 5 0 -5.76442869852606 LTS-021 chr11 57099683 57582894 483212 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, UBE2L6) 0.183301135017241 18 0.219513968468845 1.0419652829627 1167 0.583482766686656 4 4 0 -6.75803496335076 LTS-021 chr11 57582895 57886949 304055 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9I1, OR9Q1) 0.079917580936008 5 0.171282807076484 0.648618393649579 152 0.638621785487247 6 6 0 -7.18430741403221 LTS-021 chr11 57886950 57957960 71011 * c(OR9Q1, OR9Q2) 0.456 1 NA 0.541430107506676 49 0.322559194061291 0 0 0 -5.77051202603398 LTS-021 chr11 57957961 57983194 25234 * c(OR9Q2, OR1S2, OR1S1) 0.404767426630519 11 0.142194297290075 0.477052380478652 75 0.40655076254082 0 0 0 -6.79723670522294 LTS-021 chr11 57983195 58275389 292195 * c(OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1) NA 0 NA 0.561928626048253 163 0.251632688801491 1 NA NA -5.80277581646782 LTS-021 chr11 58275390 58275394 5 * OR5B21 NA 0 NA 1.206 1 NA NA NA NA NA LTS-021 chr11 58275395 58275486 92 * OR5B21 0 1 NA 1.526 1 NA NA NA NA NA LTS-021 chr11 58275487 58393231 117745 * c(CNTF, OR5B21, ZFP91-CNTF, ZFP91, LPXN) 0 2 0 1.03461598779405 269 0.494244382325317 0 0 0 -Inf LTS-021 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.701 1 NA NA NA NA NA LTS-021 chr11 58476545 58893875 417331 * c(GLYAT, GLYATL2, LOC283194, FAM111B, GLYATL1) 0.0995371619602667 4 0.232 0.624397812715008 211 0.38148505307982 2 2 0 -7.24039119341648 LTS-021 chr11 58893876 58893931 56 * FAM111B NA 0 NA 1.011 1 NA NA NA NA NA LTS-021 chr11 58893932 58980455 86524 * c(MPEG1, DTX4, FAM111B, FAM111A) 0 1 NA 0.953702877029331 316 0.498897583069517 3 3 0 -5.76446238088729 LTS-021 chr11 58980456 59056111 75656 * MPEG1 NA 0 NA 0.234 1 NA NA NA NA NA LTS-021 chr11 59056112 59132882 76771 * OR5AN1 0.4567468591709 2 0.014142135623731 0.439855564583068 24 0.160940510208235 0 0 0 -13.8708798882893 LTS-021 chr11 59132883 59189912 57030 * OR5A2 0.494 1 NA 0.517084742987698 17 0.240420954357389 0 0 0 -5.76783859354835 LTS-021 chr11 59189913 59271617 81705 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR4D10) 0.45257857754106 6 0.0396724085480072 0.559212991851058 98 0.223298618649287 0 0 0 -9.03406352408928 LTS-021 chr11 59271618 59626603 354986 * c(MIR3162, OR4D11, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, TCN1, OR10V2P) 0.133171292645035 3 0.267313174634797 0.979911065313133 541 0.528943534286225 4 4 0 -6.81418144680608 LTS-021 chr11 59626604 60184191 557588 * c(OOSP2, MS4A2, MS4A6E, MS4A4A, MS4A7, MS4A6A, TCN1, MS4A14, MS4A3) 0.301742900031772 26 0.204238401421928 0.676742009220732 539 0.4605693695349 1 1 0 -6.76503903991764 LTS-021 chr11 60184192 60201209 17018 * c(MS4A5, MS4A14) 0 1 NA 0.602482531439291 39 0.222211158406543 1 1 0 -5.764894629237 LTS-021 chr11 60201210 60511426 310217 * c(LINC00301, MS4A13, MS4A12, MS4A5, MS4A8, MS4A1) 0.0881745732476644 5 0.21421531224448 0.642854112792706 250 0.477632837831634 4 4 0 -7.19396021778411 LTS-021 chr11 60511427 60511508 82 * character(0) NA 0 NA 1.245 1 NA NA NA NA NA LTS-021 chr11 60511509 60775304 263796 * c(PTGDR2, MS4A15, ZP1, PRPF19, MS4A10, SLC15A3, TMEM132A, TMEM109, CCDC86, CD6) 0.163103868709832 6 0.227687505146857 0.955987087806566 620 0.528265440157194 5 5 0 -6.78864711644863 LTS-021 chr11 60775305 60776209 905 * CD6 0.434 1 NA 0.962896848643458 7 0.539083083975533 3 3 0 -5.76441134079351 LTS-021 chr11 60776210 60899767 123558 * c(VPS37C, CD5, CD6) 0.279230592912274 9 0.228713794949059 1.11333293038401 183 0.639511218721825 6 5 1 -6.74247191477106 LTS-021 chr11 60899768 61018754 118987 * c(PGA5, VPS37C, PGA3, PGA4) 0 1 NA 0.929240057824925 61 0.889709430678495 3 3 0 -5.76441944078858 LTS-021 chr11 61018755 61624453 605699 * c(MIR1908, MIR4488, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, TKFC, DKFZP434K028, LRRC10B, FADS1, TMEM216, TMEM138, PGA5, SDHAF2, MIR611, MYRF, TMEM258, DAGLA, CPSF7, SYT7, FADS2) 0.0489765912600442 22 0.146923928250781 1.01737282780984 1883 0.662205969479096 8 8 0 -7.21420918548408 LTS-021 chr11 61624454 61633770 9317 * FADS2 0.482 1 NA 0.865455122468534 50 0.385322430053119 3 3 0 -5.76465877444877 LTS-021 chr11 61633771 62284057 650287 * c(SCGB1D2, SCGB1D1, FTH1, INCENP, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, RAB3IL1, SCGB1A1, BEST1, AHNAK, ASRGL1, FADS2) 0.24621182701137 22 0.221477784644215 1.08852687508347 676 0.658618545829681 4 4 0 -6.73779092549854 LTS-021 chr11 62284058 62300063 16006 * AHNAK NA 0 NA 0.690032782906074 259 0.223705085371422 1 NA NA -5.76587133830447 LTS-021 chr11 62300064 62300069 6 * AHNAK NA 0 NA 0.909 1 NA NA NA NA NA LTS-021 chr11 62300070 62752231 452162 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, TUT1, SLC3A2, STX5, SNORA57, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6) 0.270807620224786 24 0.219562109498739 1.09560372978504 1993 0.68869762984579 3 3 0 -6.74831962538857 LTS-021 chr11 62752232 62752295 64 * SLC22A6 NA 0 NA 0.554 1 NA NA NA NA NA LTS-021 chr11 62752296 63064970 312675 * c(SLC22A24, SLC22A25, SLC22A10, SLC22A6, SLC22A8) 0.282718577351704 14 0.211215789869294 0.679125615325638 304 0.495916883997915 2 2 0 -6.75322490043599 LTS-021 chr11 63064971 63067009 2039 * SLC22A10 0 1 NA 0.89695000996737 11 0.976623208258482 3 3 0 -5.76441279171135 LTS-021 chr11 63067010 63177389 110380 * c(SLC22A9, SLC22A10) 0 3 0 0.637672550798948 109 0.56964341502858 0 0 0 -Inf LTS-021 chr11 63177390 63766430 589041 * c(RTN3, PLA2G16, SLC22A9, HRASLS5, COX8A, C11orf84, MARK2, ATL3, RCOR2, MACROD1, HRASLS2, OTUB1, RARRES3, C11orf95, NAA40, LGALS12) 0 5 0 0.976098696219388 1117 0.602510591302294 0 0 0 -Inf LTS-021 chr11 63766431 63885305 118875 * c(FLRT1, MACROD1) 0.467 1 NA 0.930976166549381 71 0.308476791322635 3 3 0 -5.76446166371287 LTS-021 chr11 63885306 64337181 451876 * c(MIR1237, LOC100996455, STIP1, ESRRA, FKBP2, FLRT1, PRDX5, TEX40, PPP1R14B, CCDC88B, MACROD1, DNAJC4, KCNK4, TRMT112, PLCB3, SLC22A11, GPR137, BAD, VEGFB, FERMT3, TRPT1, NUDT22, RPS6KA4) 0.278725260756829 34 0.214227509963019 1.06852605575601 1309 0.537403238435932 3 3 0 -6.75368766023537 LTS-021 chr11 64337182 64337264 83 * SLC22A11 NA 0 NA 0.832 1 NA NA NA NA NA LTS-021 chr11 64337265 64418900 81636 * c(SLC22A12, SLC22A11, NRXN2) 0.336566508356043 8 0.157736160814733 0.74164322443248 237 0.411782211510021 1 1 0 -6.74146038307678 LTS-021 chr11 64418901 64434747 15847 * NRXN2 0 1 NA 0.997671622220856 33 0.749209296575902 3 3 0 -5.76447295219575 LTS-021 chr11 64434748 64878343 443596 * c(NAALADL1, TMEM262, ARL2-SNX15, RASGRP2, EHD1, CDCA5, BATF2, GPHA2, ATG2A, MAJIN, SAC3D1, ARL2, MIR192, MIR194-2, MEN1, PPP2R5B, CDC42BPG, PYGM, MAP4K2, VPS51, SF1, ZFPL1, NRXN2) 0.0949093210048649 29 0.141610537513899 0.738215941932915 1855 0.426655882269564 5 5 0 -7.42532055381118 LTS-021 chr11 64878344 64882789 4446 * c(TM7SF2, VPS51) 0.233 1 NA 0.733767645881261 51 0.219559596626037 2 2 0 -5.76466734998322 LTS-021 chr11 64882790 65427240 544451 * c(MIR4489, MIR4690, KCNK7, CDC42EP2, SSSCA1, FAU, TIGD3, FAM89B, POLA2, SSSCA1-AS1, EHBP1L1, SLC25A45, NEAT1, MALAT1, SPDYC, PCNX3, LTBP3, MAP3K11, SLC22A20, SCYL1, RELA, DPF2, SIPA1, TM7SF2, MRPL49, ZNHIT2, CAPN1, FRMD8, SYVN1) 0.196688023769436 42 0.144712749635562 0.780486184538552 2162 0.384247967453682 3 3 0 -6.91760688927359 LTS-021 chr11 65427241 65480090 52850 * c(KAT5, RELA) 0.5 1 NA 1.00444860720215 43 0.414211781313033 3 3 0 -5.76525630889276 LTS-021 chr11 65480091 65488066 7976 * c(KAT5, RNASEH2C) NA 0 NA 0.792909793060754 106 0.375306739357778 2 NA NA -5.76441309211227 LTS-021 chr11 65488067 65747057 258991 * c(DRAP1, CFL1, CCDC85B, CTSW, SNX32, TSGA10IP, EFEMP2, OVOL1, MUS81, FOSL1, C11orf68, RNASEH2C, SART1, AP5B1, FIBP) 0.379237011030647 22 0.158774589055901 1.11593348440666 883 0.561244784016488 4 2 2 -6.74445726684626 LTS-021 chr11 65747058 65747112 55 * SART1 0 1 NA 3.138 1 NA NA NA NA NA LTS-021 chr11 65747113 66010396 263284 * c(SF3B2, CATSPER1, CST6, PACS1, EIF1AD, BANF1, GAL3ST3, SART1) 0.12322120604034 14 0.223543208203841 1.04479526242521 540 0.662896464877005 6 6 0 -6.80191718442955 LTS-021 chr11 66010397 66050712 40316 * c(CNIH2, PACS1, KLC2, RAB1B) 0.371 1 NA 0.975269803794106 233 0.391762605021468 3 3 0 -5.76463997809242 LTS-021 chr11 66050713 66358126 307414 * c(DPP3, YIF1A, B4GAT1, PELI3, CNIH2, ZDHHC24, TMEM151A, BRMS1, NPAS4, SLC29A2, CCDC87, CD248, BBS1, MRPL11, CTSF, ACTN3, RIN1) 0.354676449157679 33 0.192571744796425 1.01676585624114 1198 0.676048540305747 4 2 2 -6.73521241295689 LTS-021 chr11 66358127 66358501 375 * CCDC87 0 1 NA 1.36106521836258 11 0.783605930647194 6 6 0 -5.7644104004607 LTS-021 chr11 66358502 66581316 222815 * c(RBM14-RBM4, RBM14, CCDC87, RBM4, SPTBN2, C11orf80, RBM4B, CCS) 0 10 0 1.05744425552385 626 0.652217774440291 0 0 0 -Inf LTS-021 chr11 66581317 66590120 8804 * C11orf80 0.402 1 NA 1.17784039043835 15 0.266574299479258 5 5 0 -5.76463928146714 LTS-021 chr11 66590121 67007710 417590 * c(KDM2A, C11orf86, RHOD, PC, LRFN4, C11orf80, SYT12, RCE1) 0.30194010752456 7 0.222561601959248 1.03343374858881 503 0.561104244712419 4 3 1 -6.74841674190108 LTS-021 chr11 67007711 67801496 793786 * c(LOC100130987, MIR4691, CDK2AP2, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.34226300243449 39 0.191903530223601 1.21432084130298 1732 0.607604515457949 5 3 2 -6.73742276357818 LTS-021 chr11 67801497 67811721 10225 * c(TCIRG1, NDUFS8) 0 1 NA 1.31736840499332 51 0.828220559333056 5 5 0 -5.76443860991399 LTS-021 chr11 67811722 67815007 3286 * TCIRG1 NA 0 NA 1.20133647219662 14 0.354152912898208 5 NA NA -5.76443024522928 LTS-021 chr11 67815008 68704520 889513 * c(TCIRG1, CHKA, CPT1A, MRPL21, IGHMBP2, LRP5, GAL, KMT5B, C11orf24, PPP6R3, TESMIN) 0.129293655637138 27 0.212174120829703 0.980222424911382 1111 0.583564726164825 4 4 0 -6.87456917181554 LTS-021 chr11 68704521 68845979 141459 * c(MRGPRD, MRGPRF, TPCN2, IGHMBP2) 0.5 1 NA 1.03847730101126 177 0.386525232875834 4 4 0 -5.76583982186556 LTS-021 chr11 68845980 70007484 1161505 * c(TPCN2, ORAOV1, FGF3, FGF4, MYEOV, ANO1, CCND1, FGF19) 0.306409951516453 11 0.204502367179009 1.04078832733123 549 0.475582024431846 4 3 1 -6.75157113667049 LTS-021 chr11 70007485 70016203 8719 * ANO1 0 1 NA 0.867302999669238 25 0.625998823215081 3 3 0 -5.76449372794476 LTS-021 chr11 70016204 70346965 330762 * c(MIR548K, CTTN, SHANK2, ANO1, PPFIA1, FADD) 0 10 0 0.951762146909744 640 0.590923643496164 0 0 0 -Inf LTS-021 chr11 70346966 70666765 319800 * c(SHANK2-AS1, SHANK2) 0.44 1 NA 0.982425343172601 51 0.309076327903947 3 3 0 -5.76856544781683 LTS-021 chr11 70666766 71507186 840421 * c(MIR3664, DHCR7, SHANK2-AS3, SHANK2, ALG1L9P, KRTAP5-9, KRTAP5-10, FLJ42102, KRTAP5-7, KRTAP5-11, NADSYN1, FAM86C1, KRTAP5-8) 0.180062895451582 14 0.243472903923732 1.02137707239617 480 0.597128739008512 4 4 0 -6.76106940840612 LTS-021 chr11 71507187 71707968 200782 * c(LOC100129216, LOC100133315, DEFB108B, ALG1L9P, FAM86C1, RNF121) 0 1 NA 0.959093621116618 133 0.555866100586937 3 3 0 -5.76458974177311 LTS-021 chr11 71707969 72290253 582285 * c(MIR3165, IL18BP, LRTOMT, FOLR1, FOLR2, FOLR3, ANAPC15, INPPL1, PHOX2A, NUMA1, PDE2A, LAMTOR1, RNF121, CLPB) 0.0343662653618513 11 0.142011843296127 1.05380576576072 1009 0.652991375808276 8 8 0 -7.28693619067797 LTS-021 chr11 72290254 72326186 35933 * c(MIR139, PDE2A) 0.476 1 NA 0.987935688654266 127 0.49954704104741 3 3 0 -5.76463565053519 LTS-021 chr11 72326187 73670645 1344459 * c(MIR4692, STARD10, ARAP1, FAM168A, DNAJB13, P2RY2, P2RY6, COA4, PDE2A, MRPL48, PLEKHB1, RAB6A, PAAF1, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.34963334457118 38 0.177790189131322 1.1076044558672 1492 0.612235438115939 4 2 2 -6.73465145698716 LTS-021 chr11 73670646 73739313 68668 * c(C2CD3, DNAJB13, UCP2, UCP3) 0 1 NA 1.07305736363387 153 0.483482663668628 4 4 0 -5.76446359179585 LTS-021 chr11 73739314 74167786 428473 * c(KCNE3, C2CD3, P4HA3, PGM2L1, PPME1) 0.115341851368762 9 0.200513091841904 0.997919704462794 663 0.590476003014225 5 5 0 -6.87563427098903 LTS-021 chr11 74167787 74202919 35133 * KCNE3 0.441 1 NA 1.17393412533587 29 0.31090965773185 5 5 0 -5.76516520388165 LTS-021 chr11 74202920 74676794 473875 * c(MIR4696, POLD3, XRRA1, RNF169, CHRDL2, LIPT2, SPCS2) 0.333270686552771 21 0.213943361441205 1.02576298125395 595 0.453657177696291 4 3 1 -6.7384468927707 LTS-021 chr11 74676795 74689023 12229 * SPCS2 0 1 NA 0.65360516054816 37 0.433119916260915 1 1 0 -5.76445282219274 LTS-021 chr11 74689024 76393818 1704795 * c(TPBGL, NEU3, SLCO2B1, SNORD15B, LRRC32, KLHL35, LOC283214, OR2AT4, GUCY2EP, ARRB1, MAP6, MIR326, THAP12, EMSY, SNORD15A, RPS3, UVRAG, WNT11, MOGAT2, GDPD5, DGAT2, SERPINH1, SPCS2) 0.148339852367049 30 0.216694045131384 0.994999011786272 1708 0.606350357725398 4 4 0 -6.83401323332745 LTS-021 chr11 76393819 76427731 33913 * GUCY2EP 0.465 1 NA 1.00192553897804 75 0.499537714219785 3 3 0 -5.76475625156827 LTS-021 chr11 76427732 76737245 309514 * c(TSKU, GUCY2EP, ACER3) 0.350722391629554 17 0.173241564602385 1.0031293223278 265 0.621676536732418 3 2 1 -6.73543988467192 LTS-021 chr11 76737246 76737586 341 * character(0) 0 1 NA 1.15087329074933 9 1.12641755135474 4 4 0 -5.76441057938234 LTS-021 chr11 76737587 76916534 178948 * c(B3GNT6, MYO7A, OMP, CAPN5) 0.150911471442362 15 0.22228353836614 1.09539558289049 414 0.862547267829985 6 6 0 -6.75190278159991 LTS-021 chr11 76916535 76917220 686 * MYO7A 0.4 1 NA 1.08648248208633 7 0.721292919825556 4 4 0 -5.76441015425937 LTS-021 chr11 76917221 77883478 966258 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, GDPD4, AQP11, KCTD21, AAMDC, MYO7A, NDUFC2, PAK1, RSF1, KCTD14, THRSP, ALG8, INTS4) 0.30637004457591 37 0.19831028710072 0.994679233802568 1051 0.700265928096277 4 3 1 -6.75552120545096 LTS-021 chr11 77883479 77907762 24284 * c(KCTD21-AS1, KCTD21, USP35) 0 1 NA 0.990673949654456 59 0.464454361467966 3 3 0 -5.76460606027614 LTS-021 chr11 77907763 78368664 460902 * c(TENM4, USP35, NARS2, GAB2) 0.0538275555933093 9 0.119666666666667 0.992038803856602 449 0.503482230576733 8 8 0 -7.39726062422234 LTS-021 chr11 78368665 78482113 113449 * TENM4 0.45 1 NA 0.861891917845471 165 0.349975566880255 3 3 0 -5.7684600604979 LTS-021 chr11 78482114 82641317 4159204 * c(MIR708, MIR4300, MIR5579, DDIAS, FAM181B, TENM4, PRCP) 0.349321773960338 5 0.205329734816952 0.987892117188523 270 0.51210660268956 3 2 1 -6.75811638458471 LTS-021 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.355 1 NA NA NA NA NA LTS-021 chr11 82642812 82645159 2348 * DDIAS 0.453 1 NA 0.387873722688446 49 0.111565308349912 0 0 0 -5.76946211644506 LTS-021 chr11 82645160 82691050 45891 * DDIAS 0.442294343188802 7 0.0293111387895942 0.846919953416485 179 0.332504837579843 2 1 1 -9.68359162202011 LTS-021 chr11 82691051 82691492 442 * character(0) 0 1 NA 1.3576364659983 13 0.590458937107617 6 6 0 -5.7644107947541 LTS-021 chr11 82691493 84865566 2174074 * c(SNORA70E, RAB30-AS1, DLG2, RAB30, ANKRD42, PCF11, CCDC90B) 0.165346924675996 19 0.22659418345714 0.829501782590634 893 0.487961046173276 3 3 0 -6.9170277738757 LTS-021 chr11 84865567 85395652 530086 * c(DLG2, CCDC89, TMEM126B, CREBZF, TMEM126A) 0.46 1 NA 0.781318261039089 203 0.378228824846532 2 2 0 -5.76447487710818 LTS-021 chr11 85395653 85692181 296529 * c(CCDC83, CCDC89, SYTL2, PICALM) 0.450880975754311 11 0.0440144604337339 0.76828798986917 400 0.406381893523147 2 1 1 -8.65858281301585 LTS-021 chr11 85692182 85722049 29868 * PICALM 0 1 NA 1.08347800918661 45 0.430767716121491 4 4 0 -5.76441593684206 LTS-021 chr11 85722050 88241831 2519782 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, RAB38, GRM5, HIKESHI, CCDC81, TMEM135, PICALM, FZD4, OR7E2P, EED) 0.344624816773435 17 0.201074009640583 0.951653596348721 1023 0.58454247584951 3 2 1 -6.73532329254581 LTS-021 chr11 88241832 92592492 4350661 * c(NAALAD2, MIR4490, GRM5-AS1, FAT3, TRIM64, FOLH1B, CHORDC1, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.218483721748935 24 0.231577998879897 0.72023279101094 1136 0.573532613530087 2 2 0 -6.86590223915725 LTS-021 chr11 92592493 92599852 7360 * FAT3 NA 0 NA 1.267 1 NA NA NA NA NA LTS-021 chr11 92599853 93521405 921553 * c(MIR1304, SLC36A4, FAT3, DEUP1, C11orf54, MTNR1B, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.282073004064893 27 0.21455935763494 0.932734144157749 915 0.593424832220137 3 3 0 -6.73987335554808 LTS-021 chr11 93521406 93542894 21489 * MED17 0 1 NA 1.18182863331302 65 0.437905579588358 5 5 0 -5.76459294511806 LTS-021 chr11 93542895 99942546 6399652 * c(MIR1260B, JRKL-AS1, GPR83, FAM76B, SESN3, PIWIL4, AMOTL1, ENDOD1, PANX1, FUT4, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, CWC15, CNTN5, ANKRD49, KDM4D, C11orf97, CCDC82, MAML2, JRKL, MTMR2, MED17, CEP57) 0.180349519097833 41 0.220909381598086 0.921661978298417 2402 0.466476810228537 3 3 0 -6.81454883783639 LTS-021 chr11 99942547 100229099 286553 * CNTN5 0.47 1 NA 0.781787798048203 143 0.300801527339209 2 2 0 -5.76445383449057 LTS-021 chr11 100229100 102398593 2169494 * c(MIR3920, LOC101054525, YAP1, TMEM123, ARHGAP42, ANGPTL5, BIRC2, BIRC3, MMP7, PGR, CNTN5, CEP126, TRPC6, TMEM133, C11orf70) 0.302325569092895 46 0.204648685656817 0.911408815186047 1472 0.516340015564497 3 3 0 -6.76374650879945 LTS-021 chr11 102398594 102582964 184371 * c(MMP7, MMP8, MMP27, MMP20) 0 1 NA 0.843024618028812 163 0.494450952064587 2 2 0 -5.76666568641732 LTS-021 chr11 102582965 104035111 1452147 * c(WTAPP1, MIR4693, DDI1, MMP1, MMP3, MMP8, MMP10, MMP12, MMP13, DYNC2H1, PDGFD, DCUN1D5) 0 9 0 0.894266982922654 1068 0.53288301004862 0 0 0 -Inf LTS-021 chr11 104035112 105881703 1846592 * c(CASP12, CARD16, GRIA4, CARD17, CARD18, LOC643733, CASP1, CASP4, CASP5, MSANTD4) 0.179142085308432 6 0.253615194076906 0.720767684131238 572 0.390445700967139 2 2 0 -6.91990797836506 LTS-021 chr11 105881704 106408071 526368 * c(KBTBD3, AASDHPPT, MSANTD4) 0.432 1 NA 0.860780756786202 169 0.531493956301172 3 3 0 -5.77279945700851 LTS-021 chr11 106408072 106849443 441372 * GUCY1A2 0.4 1 NA 0.599744346529115 147 0.214658384571647 1 1 0 -5.78048812324002 LTS-021 chr11 106849444 108009660 1160217 * c(CWF19L2, GUCY1A2, ACAT1, SLC35F2, RAB39A, ELMOD1, LOC643923, SLN, CUL5, ALKBH8) 0.354672535619048 26 0.165809269481998 1.01838962696539 716 0.69010396176257 4 2 2 -6.74030161717744 LTS-021 chr11 108009661 108028460 18800 * c(ACAT1, NPAT) 0 1 NA 1.20638969885789 57 0.641032134427301 5 5 0 -5.76443750221398 LTS-021 chr11 108028461 108377416 348956 * c(KDELC2, C11orf65, EXPH5, ATM, NPAT) 0.12373009165795 17 0.209209752612624 1.08661761003095 749 0.545170462440835 6 6 0 -6.82064735815793 LTS-021 chr11 108377417 108378207 791 * EXPH5 0.457 1 NA 1.11658943778886 11 0.348397578532447 4 4 0 -5.76441208557393 LTS-021 chr11 108378208 108722851 344644 * c(DDX10, EXPH5) 0.365193214263169 9 0.14452248959937 0.898629347102255 271 0.387800755359749 3 2 1 -6.73889173889463 LTS-021 chr11 108722852 108789588 66737 * DDX10 0 1 NA 1.1999890063336 23 0.577441412595457 5 5 0 -5.76457360352349 LTS-021 chr11 108789589 113142424 4352836 * c(LOC100132078, NCAM1-AS1, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, LAYN, DDX10, DLAT, FDX1, SIK2, TIMM8B, HSPB2, C11orf53, PLET1, IL18, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, POU2AF1, BTG4, PPP2R1B, C11orf57, TEX12, ARHGAP20, PTS, RDX, SDHD, C11orf1, ALG9, BCO2, DIXDC1, ZC3H12C, FDXACB1) 0.144541371424133 35 0.209033884109449 0.966985186582427 2829 0.562218902743965 3 3 0 -6.91574704819027 LTS-021 chr11 113142425 113143796 1372 * c(NCAM1-AS1, NCAM1) 0.494 1 NA 0.820577885678884 7 0.288546026699051 2 2 0 -5.76442894188902 LTS-021 chr11 113143797 114311507 1167711 * c(NCAM1-AS1, MIR4301, RBM7, DRD2, ANKK1, REXO2, HTR3A, NCAM1, NNMT, C11orf71, TTC12, USP28, CLDN25, ZBTB16, TMPRSS5, HTR3B, ZW10) 0.291683452319691 38 0.21554730530683 0.946579975941253 1159 0.478434647111571 3 3 0 -6.74679335047591 LTS-021 chr11 114311508 114312406 899 * REXO2 NA 0 NA 0.638 1 NA NA NA NA NA LTS-021 chr11 114312407 114578494 266088 * c(NXPE1, NXPE2, REXO2, NXPE4) 0.347548737793509 24 0.155013113049804 0.584130357372171 227 0.386617581016582 1 1 0 -6.74019237529015 LTS-021 chr11 114578495 114578652 158 * character(0) NA 0 NA 0.952 1 NA NA NA NA NA LTS-021 chr11 114578653 114579249 597 * character(0) 0.297 1 NA 0.86653103765326 13 0.304361774445461 3 3 0 -5.76443485706868 LTS-021 chr11 114579250 114579261 12 * character(0) 0 1 NA 1.491 1 NA NA NA NA NA LTS-021 chr11 114579262 116827606 2248345 * c(APOA5, SIK3, CADM1, LINC00900, APOA1, APOA4, APOC3, BUD13, ZPR1) 0.147861215481218 12 0.198230123387395 1.01722916407059 646 0.412746770677647 4 4 0 -6.86546410590272 LTS-021 chr11 116827607 117015195 187589 * c(SIK3, PAFAH1B2) 0.441 1 NA 1.08391536102906 26 0.526743072679067 4 4 0 -5.76443203489727 LTS-021 chr11 117015196 118185140 1169945 * c(BACE1-AS, TMPRSS4-AS1, FXYD6-FXYD2, LOC100652768, MPZL2, JAML, MPZL3, CEP164, BACE1, RNF214, IL10RA, FXYD2, PAFAH1B2, SIDT2, FXYD6, TMPRSS4, DSCAML1, SCN2B, SCN4B, TAGLN, TMPRSS13, PCSK7, CD3E) 0.341487246472039 67 0.192078587112978 1.00912714876987 2275 0.532652311944386 3 2 1 -6.74872109162806 LTS-021 chr11 118185141 118186845 1705 * CD3E 0 1 NA 0.998133620087029 19 0.688636461014516 3 3 0 -5.76441825247089 LTS-021 chr11 118186846 118423019 236174 * c(LOC100131626, ATP5L, TTC36, KMT2A, IFT46, TMEM25, CD3D, CD3E, CD3G, UBE4A) 0.034724555105227 16 0.116725818337961 0.989933825962097 1010 0.872273017188836 16 16 0 -7.07691874070498 LTS-021 chr11 118423020 118509668 86649 * c(PHLDB1, ARCN1, IFT46) 0.478 1 NA 0.96382855023903 235 0.504180214549726 3 3 0 -5.76455254780582 LTS-021 chr11 118509669 119005485 495817 * c(MIR3656, MIR4492, HYOU1, TREH, DDX6, DPAGT1, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, H2AFX, HMBS, CCDC84, TRAPPC4, VPS11, RPS25, CXCR5, RPL23AP64, UPK2, C2CD2L) 0.273105608491864 36 0.220841527251398 1.01308635789822 1482 0.637320493015304 3 3 0 -6.73964263087006 LTS-021 chr11 119005486 119005554 69 * HINFP 0 1 NA 1.04048730745826 3 1.1848697537423 4 4 0 -5.76441020227567 LTS-021 chr11 119005555 119053769 48215 * c(HINFP, ABCG4, NLRX1) 0.1147193305929 10 0.194535600854959 0.915431057461883 226 0.782641119031965 10 10 0 -6.76490488946807 LTS-021 chr11 119053770 119054488 719 * NLRX1 0.46 1 NA 0.507554558476233 19 0.309623313869011 0 0 0 -5.76442500320774 LTS-021 chr11 119054489 119369816 315328 * c(USP2-AS1, CCDC153, MCAM, THY1, RNF26, NLRX1, PDZD3, MFRP, CBL, USP2) 0.415178246800041 15 0.122318942970923 0.95985569834614 861 0.418803474050901 3 2 1 -6.87739048334053 LTS-021 chr11 119369817 119369979 163 * USP2-AS1 0 1 NA 1.06888532779256 5 1.7621943139166 4 4 0 -5.7644101488672 LTS-021 chr11 119369980 120186092 816113 * c(USP2-AS1, OAF, TRIM29, POU2F3, NECTIN1, LOC649133) 0.0761034737588419 16 0.191495332841299 0.996875334022372 516 0.683399189516277 6 6 0 -7.02247115155209 LTS-021 chr11 120186093 120186190 98 * POU2F3 0.429 1 NA 1.63533053791264 3 0.958987139295066 8 8 0 -5.7644102436742 LTS-021 chr11 120186191 120319064 132874 * c(TMEM136, ARHGEF12, POU2F3) 0.30344267757348 10 0.218384497821821 1.06928965672438 226 0.531241939264429 5 4 1 -6.73979893668402 LTS-021 chr11 120319065 120319855 791 * ARHGEF12 0 1 NA 1.53461679257389 3 0.893528026048055 7 7 0 -5.76441020533544 LTS-021 chr11 120319856 121231644 911789 * c(TBCEL, ARHGEF12, GRIK4, SC5D, TECTA) 0.131119585385689 23 0.214906294498369 0.964717933736309 870 0.546834853813844 4 4 0 -6.87686148976285 LTS-021 chr11 121231645 121231721 77 * character(0) NA 0 NA 1.493 1 NA NA NA NA NA LTS-021 chr11 121231722 123756389 2524668 * c(MIR4493, HSPA8, TMEM225, LOC341056, BSX, OR6X1, OR6M1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SORL1, ZNF202, CLMP, C11orf63, UBASH3B) 0.10042321130027 47 0.133288302216898 1.72156305361015 1515 1.04560413208001 9 9 0 -6.78790801199306 LTS-021 chr11 123756390 123777076 20687 * character(0) NA 0 NA 0.507 1 NA NA NA NA NA LTS-021 chr11 123777077 123886984 109908 * c(OR10S1, OR6T1, OR4D5, OR8D4, OR10G4) 0.145019210348674 8 0.110055829987719 0.997731724572031 125 0.782229172095633 8 8 0 -6.76475649134669 LTS-021 chr11 123886985 123887164 180 * OR10G4 0.309 1 NA 0.789742252744076 5 0.58829218930732 2 2 0 -5.76441014345978 LTS-021 chr11 123887165 124253170 366006 * c(OR10G8, OR10G9, OR8G2, OR8B2, OR8D1, OR8D2, OR10G4, OR10G7, VWA5A) 0.332265169185944 15 0.133326916512258 1.10850750698234 395 0.732358802395993 4 3 1 -6.73332414256366 LTS-021 chr11 124253171 124439883 186713 * c(OR8B12, OR8B8, OR8B2, OR8B4, OR8B3) 0 1 NA 0.87238879721719 105 0.601821145227127 3 3 0 -5.76607108725468 LTS-021 chr11 124439884 124441029 1146 * OR8A1 NA 0 NA 1.20551582359308 26 0.385591517621353 5 NA NA -5.76441495547342 LTS-021 chr11 124441030 124763564 322535 * c(PANX3, VSIG2, NRGN, SPA17, SIAE, ROBO4, ROBO3, MSANTD2, TBRG1, ESAM) 0.0120895186489979 21 0.0586855218617887 1.92117605728003 865 1.00160778034151 20 20 0 -7.43881919009498 LTS-021 chr11 124763565 124763647 83 * ROBO4 0.233 1 NA 1.112 1 NA NA NA NA NA LTS-021 chr11 124763648 125280041 516394 * c(TMEM218, SLC37A2, HEPACAM, ROBO4, PKNOX2, HEPN1, CCDC15) 0.239955979460852 27 0.0895348537078719 1.68196074759064 480 0.90361732065933 8 7 1 -6.7338608734551 LTS-021 chr11 125280042 125324080 44039 * c(PKNOX2, FEZ1) 0 1 NA 1.66891350385051 101 0.731537737499672 8 8 0 -5.76443227961014 LTS-021 chr11 125324081 128838719 3514639 * c(PATE3, MIR3167, SENCR, KIRREL3-AS2, CHEK1, TIRAP, PATE1, ETS1, C11orf45, HYLS1, FLI1, KIRREL3-AS3, DCPS, DDX25, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, CDON, FOXRED1, ACRV1, TP53AIP1, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4, EI24, FEZ1, ARHGAP32) 0.155306503564987 81 0.122649369754739 1.82166281719399 2535 1.61729059997471 8 8 0 -6.7379565429049 LTS-021 chr11 128838720 128844567 5848 * ARHGAP32 0.0370862034052264 4 0.102 1.04706721710363 128 0.697023905077514 20 20 0 -6.82881762917748 LTS-021 chr11 128844568 130340962 1496395 * c(ADAMTS8, TMEM45B, ADAMTS15, ZBTB44, APLP2, LINC00167, NFRKB, PRDM10, ST14, BARX2, ARHGAP32) 0.162738405196579 30 0.120259183700738 1.92957251365492 1294 1.00060058422875 8 8 0 -6.75410786497891 LTS-021 chr11 130340963 130586173 245211 * c(ADAMTS15, C11orf44) 0 1 NA 1.48072255769864 149 0.539039845564419 7 7 0 -5.76551241649549 LTS-021 chr11 130586174 130746146 159973 * c(C11orf44, SNX19) 0.223 1 NA 1.32427243438139 65 0.501997289680088 6 6 0 -5.76553601186435 LTS-021 chr11 130746147 133715494 2969348 * c(SPATA19, SNX19, OPCML, NTM) 0.246289219138375 20 0.142977537801535 1.1936974812287 497 0.615377553369541 4 4 0 -6.78165258352158 LTS-021 chr11 133715495 133768340 52846 * MIR4697HG NA 0 NA 1.514 1 NA NA NA NA NA LTS-021 chr11 133768341 134251777 483437 * c(LOC100128239, VPS26B, GLB1L3, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, THYN1, JAM3, GLB1L2) 0.212556136028916 33 0.208873507284803 1.62543915970468 1049 0.881370297447824 9 8 1 -6.74024494088554 LTS-021 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 1.57851484889918 43 0.766710193285093 7 NA NA -5.76459475074005 LTS-021 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.341 1 NA 1.6024909198654 5 0.862617064519361 7 7 0 -5.76448211938678 LTS-021 chr12 176140 670848 494709 * c(B4GALNT3, IQSEC3, LOC574538, KDM5A, SLC6A12, SLC6A13, CCDC77) 0.0597390835604074 16 0.156451363581998 1.30460950240105 882 0.73392321489227 10 10 0 -6.94635695320885 LTS-021 chr12 670849 671670 822 * B4GALNT3 0.474 1 NA 1.01052129603604 19 0.347782372968166 3 3 0 -5.76443225393244 LTS-021 chr12 671671 3409204 2737534 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, LOC283440, NINJ2, ITFG2, RAD52, WNK1, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CACNA2D4) 0.208585693572899 71 0.204027364322422 1.19577252857544 2636 0.642448248412523 5 5 0 -6.74042793535014 LTS-021 chr12 3409205 4740515 1331311 * c(AKAP3, RAD51AP1, FGF6, PRMT8, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.311044890985402 23 0.166339977582939 0.986027579348287 1080 0.713958683570587 4 3 1 -6.76140534367822 LTS-021 chr12 4740516 4920374 179859 * c(AKAP3, GALNT8, KCNA6, NDUFA9) 0 1 NA 1.08909932154684 250 0.794364186819374 4 4 0 -5.76441126982591 LTS-021 chr12 4920375 5603976 683602 * c(KCNA1, KCNA5, KCNA6, NTF3) 0 3 0 0.917409888395553 173 0.530920050744268 0 0 0 -Inf LTS-021 chr12 5603977 6143911 539935 * c(NTF3, ANO2, VWF) 0.0648824149629677 10 0.165151647483961 1.34158879535068 388 0.755673814131094 9 9 0 -6.90734547951136 LTS-021 chr12 6143912 6172202 28291 * VWF 0.326 1 NA 1.82245405524393 45 1.42627418950087 9 9 0 -5.7644132162921 LTS-021 chr12 6172203 7285482 1113280 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, CLSTN3, NCAPD2) 0.328947083191936 79 0.146203096213525 1.37482672704276 3502 0.790213847086451 6 4 2 -6.74300593955471 LTS-021 chr12 7285483 7303338 17856 * CLSTN3 0 1 NA 1.27246135767181 79 0.609618043298181 5 5 0 -5.764423765217 LTS-021 chr12 7303339 7355396 52058 * c(PEX5, CLSTN3) 0 2 0 1.45509290171785 117 1.04025025490898 0 0 0 -Inf LTS-021 chr12 7355397 7355926 530 * PEX5 NA 0 NA 1.026 1 NA NA NA NA NA LTS-021 chr12 7355927 8074163 718237 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, SLC2A3, NANOG, CD163, GDF3) 0.193572090414521 11 0.18772228036505 0.905069759918739 825 0.608033918697915 4 4 0 -6.79220125816279 LTS-021 chr12 8074164 9027121 952958 * c(A2ML1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.107860329901483 24 0.189198610276172 1.18040573978824 1020 0.768952760008838 6 6 0 -6.84672178186723 LTS-021 chr12 9027122 9073724 46603 * c(A2ML1, PHC1) NA 0 NA 1.08166240297145 32 0.681440799709017 4 NA NA -5.76441548727457 LTS-021 chr12 9073725 9086898 13174 * PHC1 0.421 1 NA 0.705691127223439 51 0.326694044070859 2 2 0 -5.76526106132222 LTS-021 chr12 9086899 9093909 7011 * c(PHC1, M6PR) 0.344479512999823 3 0.0153079500042734 0.53964666136657 86 0.556769519347475 1 1 0 -6.73680790948999 LTS-021 chr12 9093910 9093989 80 * c(PHC1, M6PR) NA 0 NA 0.733 1 NA NA NA NA NA LTS-021 chr12 9093990 9590665 496676 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.287632967971918 26 0.163884110085333 1.00476584534184 689 0.544131538406107 3 3 0 -6.7556166926786 LTS-021 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 1.697 1 NA NA NA NA NA LTS-021 chr12 9633155 9747340 114186 * character(0) NA 0 NA 1.71148581717278 96 0.81378145039879 8 NA NA -5.76441179905837 LTS-021 chr12 9747341 10569363 822023 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.281953917320574 41 0.193580489971384 0.73879969574261 1120 0.493438066520521 2 2 0 -6.74592826659096 LTS-021 chr12 10569364 10570915 1552 * KLRC3 NA 0 NA 0.427 1 NA NA NA NA NA LTS-021 chr12 10570916 10599981 29066 * c(KLRC1, KLRC2, KLRC3) 0.360793209978637 5 0.201013681126435 0.412058014109797 120 0.306703916451921 0 0 0 -6.73736487229222 LTS-021 chr12 10599982 11803039 1203058 * c(SMIM10L1, PRH1-PRR4, KLRA1P, PRR4, ETV6, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, LINC01252, TAS2R42, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB1, PRB3, PRB4, PRH1, PRH2, PRB2, YBX3) 0.329210377598169 68 0.115115520098358 0.65434302078339 901 0.433367303606019 1 1 0 -6.74651400577701 LTS-021 chr12 11803040 15102681 3299642 * c(LOC100506314, CDKN1B, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, SMCO3, LOH12CR2, HEBP1, DDX47, WBP11, MANSC1, GPRC5D, ATF7IP, H2AFJ, FAM234B, MIR613, MIR614, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, GPRC5A, HTR7P1) 0.313981542266161 85 0.208287839514543 0.928640295626588 2668 0.552545525814133 3 2 1 -6.75647940858047 LTS-021 chr12 15102682 15261342 158661 * c(ARHGDIB, PDE6H, RERG) 0 1 NA 0.900551609473959 49 0.331809665187084 3 3 0 -5.7659001773694 LTS-021 chr12 15261343 16189224 927882 * c(STRAP, EPS8, DERA, PTPRO, RERG) 0 3 0 0.888863051938375 495 0.484385962373724 0 0 0 -Inf LTS-021 chr12 16189225 19353880 3164656 * c(MIR3974, MGST1, DERA, PIK3C2G, PLEKHA5, LMO3, SKP1P2, SLC15A5, RERGL, PLCZ1, CAPZA3) 0.121069847304953 6 0.201149115500582 0.703621241165176 602 0.415127976729305 2 2 0 -7.3051256221634 LTS-021 chr12 19353881 19354014 134 * PLEKHA5 NA 0 NA 1.029 1 NA NA NA NA NA LTS-021 chr12 19354015 20836642 1482628 * c(LOC100506393, AEBP2, PDE3A, PLEKHA5) 0.133591217369905 6 0.228472026004644 1.00532846654569 482 0.50593831084684 4 4 0 -6.85425402441667 LTS-021 chr12 20836643 21467434 630792 * c(SLCO1B1, SLCO1B3, SLCO1B7, PDE3A, SLCO1C1, SLCO1A2) 0.0432936504454771 9 0.151333333333333 0.729451949428557 489 0.440232029379099 4 4 0 -7.80619067959642 LTS-021 chr12 21467435 21609773 142339 * c(IAPP, SLCO1A2, PYROXD1) 0.352 1 NA 0.758329764673655 111 0.345865269673879 2 2 0 -5.76529764599559 LTS-021 chr12 21609774 21715801 106028 * c(GYS2, GOLT1B, RECQL, PYROXD1, SPX) 0.374973467493585 19 0.150225600328812 0.794182127692611 340 0.451436104529006 2 1 1 -6.74114583611326 LTS-021 chr12 21715802 21757504 41703 * GYS2 0 1 NA 0.682013204114615 33 0.216841968709794 1 1 0 -5.76744857316199 LTS-021 chr12 21757505 22487577 730073 * c(ABCC9, GYS2, KCNJ8, LDHB, CMAS, ST8SIA1) 0.206964599790545 13 0.238029921626974 0.742467053881166 537 0.354780656184371 2 2 0 -6.83461178052922 LTS-021 chr12 22487578 23689546 1201969 * c(ETNK1, ST8SIA1, SOX5, C2CD5) 0 5 0 0.935154619547848 355 0.455796657719766 0 0 0 -Inf LTS-021 chr12 23689547 23893753 204207 * SOX5 0.46 1 NA 0.843330796028043 53 0.494232168256309 2 2 0 -5.76693623639926 LTS-021 chr12 23893754 29444284 5550531 * c(MIR920, MANSC4, MIR4302, RASSF8-AS1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, SMCO2, ITPR2, KRAS, REP15, LRMP, TM7SF3, CASC1, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, BCAT1, MRPS35, SOX5, C12orf71, BHLHE41, SSPN, PPFIBP1, MED21) 0.323028504269563 78 0.197013043208157 0.928612428442349 2900 0.854459622282356 3 2 1 -6.7489003845006 LTS-021 chr12 29444285 29460591 16307 * FAR2 0 1 NA 0.730271192419659 21 0.479702050384254 2 2 0 -5.76463646588735 LTS-021 chr12 29460592 29670431 209840 * c(OVCH1-AS1, OVCH1, ERGIC2, FAR2, TMTC1) 0.106695637758355 10 0.20521912408177 0.846640325470822 506 0.452690423170867 5 5 0 -6.9462836937448 LTS-021 chr12 29670432 29689157 18726 * TMTC1 0.492 1 NA 1.26701141013286 19 0.485257759924817 5 5 0 -5.76442466775022 LTS-021 chr12 29689158 30907317 1218160 * c(IPO8, CAPRIN2, TMTC1) 0.417748265347377 14 0.126401592701052 0.901869804712066 426 0.587038805690825 3 2 1 -6.88271926099707 LTS-021 chr12 30907318 31107854 200537 * c(LINC00941, TSPAN11, CAPRIN2) 0 1 NA 0.686638504920138 41 0.305369654042041 1 1 0 -5.77314592532378 LTS-021 chr12 31107855 31824710 716856 * c(DDX11-AS1, DENND5B-AS1, DENND5B, DDX11, AMN1, ETFBKMT, TSPAN11, FAM60A, FLJ13224) 0.181975016219267 15 0.227513097477507 1.01133929584145 796 0.629239582815713 4 4 0 -6.76229018035503 LTS-021 chr12 31824711 31944691 119981 * c(AMN1, H3F3C) 0.42 1 NA 0.862868737302015 88 0.407806223928494 3 3 0 -5.76748198037143 LTS-021 chr12 31944692 34175508 2230817 * c(DNM1L, RNU6-78P, FGD4, SYT10, H3F3C, YARS2, PKP2, KIAA1551, BICD1, ALG10) 0.34117567274514 32 0.194040640488765 0.977203627085571 971 0.51493865792899 3 2 1 -6.74401966526849 LTS-021 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 0.646414041344574 57 0.411746067297354 1 NA NA -5.76442237389944 LTS-021 chr12 38710341 38710459 119 * character(0) 0.454 1 NA 0.582070143653104 3 0.0616116872029975 1 1 0 -5.76453823337993 LTS-021 chr12 38710460 39687754 977295 * c(ALG10B, CPNE8, KIF21A) 0.372990717777868 9 0.144777799096101 0.719704548107078 222 0.340040021821583 2 1 1 -6.7784755808994 LTS-021 chr12 39687755 39687918 164 * KIF21A 0 1 NA 1.05911413672226 3 0.461078084493288 4 4 0 -5.7644105624462 LTS-021 chr12 39687919 40151144 463226 * c(SLC2A13, ABCD2, C12orf40, KIF21A) 0.151870623327155 15 0.220207110304303 0.780710655734842 490 0.424400866507923 3 3 0 -6.9243913323522 LTS-021 chr12 40151145 40151546 402 * c(SLC2A13, C12orf40) 0.333 1 NA 0.780008792007227 9 0.256214753673554 2 2 0 -5.76441031804709 LTS-021 chr12 40151547 40838146 686600 * c(SLC2A13, LRRK2, C12orf40) 0.350956836155396 13 0.165193903159365 0.770191148200337 620 0.361586619327759 2 1 1 -6.73520710132851 LTS-021 chr12 40838147 40838290 144 * character(0) 0 1 NA 0.442424497322424 5 0.567731626739254 0 0 0 -5.76441183034064 LTS-021 chr12 40838291 40912897 74607 * character(0) 0.159066746941187 9 0.215201907777582 0.745353675619963 143 0.570712347311999 5 5 0 -6.79132757353769 LTS-021 chr12 40912898 40915480 2583 * character(0) 0.444 1 NA 0.786355148512861 25 0.545836284979297 2 2 0 -5.76441014016332 LTS-021 chr12 40915481 41366155 450675 * CNTN1 0.417506704801112 14 0.128134973479419 0.731347750618619 412 0.470704949290539 2 1 1 -6.86791842851622 LTS-021 chr12 41366156 41410548 44393 * CNTN1 0 1 NA 0.976612099103743 17 0.553491703800943 3 3 0 -5.76454622676384 LTS-021 chr12 41410549 44188758 2778210 * c(YAF2, CNTN1, PRICKLE1, GXYLT1, PDZRN4, IRAK4, PPHLN1, TWF1, ADAMTS20, PUS7L, ZCRB1) 0.234127048089324 34 0.216071497789187 0.823017237421544 1190 0.495471308967868 2 2 0 -6.80320354475423 LTS-021 chr12 44188759 44605170 416412 * c(TWF1, TMEM117) 0 1 NA 0.785963763890077 107 0.488298238591254 2 2 0 -5.76441043091998 LTS-021 chr12 44605171 45567942 962772 * c(DBX2, NELL2, PLEKHA8P1, RACGAP1P, TMEM117) 0.129631272944354 6 0.24845254409377 0.673425084525726 309 0.452540907961617 2 2 0 -7.06921584138954 LTS-021 chr12 45567943 45568022 80 * PLEKHA8P1 NA 0 NA 1.058 1 NA NA NA NA NA LTS-021 chr12 45568023 46321686 753664 * c(ANO6, ARID2, LINC00938, PLEKHA8P1, RNY5, SCAF11) 0.0435031398744839 8 0.171473394437738 0.974459819714159 534 0.642749122445319 6 6 0 -7.23062429627872 LTS-021 chr12 46321687 46323213 1527 * SCAF11 0.232 1 NA 1.11282032416949 29 1.49040369279188 4 4 0 -5.76441028298579 LTS-021 chr12 46323214 48190044 1866831 * c(PCED1B-AS1, MIR4698, RAPGEF3, AMIGO2, HDAC7, SLC38A2, SLC38A4, SLC48A1, RPAP3, SLC38A1, ENDOU, PCED1B, SCAF11) 0.328669529857339 35 0.198254589739913 1.01418183299653 1241 0.624932544619025 4 3 1 -6.74918537080779 LTS-021 chr12 48190045 48237920 47876 * c(HDAC7, VDR) 0 1 NA 1.12219510437546 91 0.645577333499786 4 4 0 -5.76446172497671 LTS-021 chr12 48237921 48388150 150230 * c(COL2A1, VDR, TMEM106C) 0.122035168217502 13 0.214276630454593 0.936263106806902 373 0.579257572533023 6 6 0 -6.81958549635661 LTS-021 chr12 48388151 48413875 25725 * COL2A1 0.484 1 NA 0.814717189668497 63 0.656421832842151 2 2 0 -5.76445775617847 LTS-021 chr12 48413876 48735114 321239 * c(ZNF641, OR10AD1, ASB8, SENP1, H1FNT, CCDC184, PFKM) 0.377106656659034 34 0.166231538049867 0.946732888974498 568 0.588319301657683 3 2 1 -6.74408214929254 LTS-021 chr12 48735115 48736413 1299 * ZNF641 0 1 NA 1.03374388272388 27 0.322833082923977 4 4 0 -5.76443252618488 LTS-021 chr12 48736414 50050370 1313957 * c(TROAP, LOC100335030, MIR4701, TUBA1B, MCRS1, ADCY6, RHEBL1, C12orf54, ZNF641, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, RND1, C1QL4, OR8S1, ARF3, LALBA, DHH, FKBP11, KANSL2, PRKAG1, LMBR1L, PRPH, SPATS2, SNORA2A, SNORA2B, SNORA2C, WNT1, WNT10B, CACNB3, TUBA1A, DNAJC22, KMT2D, FAM186B, TUBA1C, CCDC65, CCNT1, FMNL3, DDX23) 0.0976734830269922 48 0.189516162599723 0.960843798898436 3417 0.544022936731629 4 4 0 -7.04141848965094 LTS-021 chr12 50050371 50135756 85386 * c(TMBIM6, FMNL3) 0.475 1 NA 0.913899060711688 53 0.429390691267824 3 3 0 -5.76460977360442 LTS-021 chr12 50135757 50746917 611161 * c(BCDIN3D-AS1, MIR1293, FAM186A, BCDIN3D, FAIM2, GPD1, LOC283332, RACGAP1, AQP2, AQP5, AQP6, ASIC1, LIMA1, NCKAP5L, SMARCD1, TMBIM6, COX14, CERS5) 0.379315307533776 28 0.146187909082471 1.01245165680816 1454 1.35384272576709 4 2 2 -6.74746671839809 LTS-021 chr12 50746918 50848160 101243 * c(LARP4, FAM186A) 0 1 NA 1.0702402296423 151 0.407553286376399 4 4 0 -5.76455706581351 LTS-021 chr12 50848161 52174035 1325875 * c(GALNT6, LARP4, CELA1, METTL7A, LETMD1, TMPRSS12, ATF1, SLC11A2, BIN2, POU6F1, SMAGP, DIP2B, HIGD1C, SCN8A, TFCP2, CSRNP2, SLC4A8, DAZAP2) 0.0524226260349304 36 0.165001491094754 0.999304619071413 1840 0.610890626834435 5 5 0 -7.28333263266279 LTS-021 chr12 52174036 52200742 26707 * SCN8A 0.367 1 NA 0.752932537317523 57 0.51708437476544 2 2 0 -5.76451788764464 LTS-021 chr12 52200743 52699548 498806 * c(KRT80, GRASP, C12orf80, LINC00592, NR4A1, ANKRD33, KRT7, KRT81, KRT86, FIGNL2, ATG101, SCN8A, ACVR1B, ACVRL1) 0.263044293507886 15 0.21041722725055 1.10796230458825 855 0.693425503478274 3 3 0 -6.7502762042196 LTS-021 chr12 52699549 52708138 8590 * c(KRT81, KRT83, KRT86) 0 1 NA 1.05225774565465 21 0.485446588695595 4 4 0 -5.76444005467255 LTS-021 chr12 52708139 52794348 86210 * c(KRT82, KRT83, KRT84, KRT85) 0.0576083085008905 10 0.168299501550724 1.01515979467921 238 0.802629588567697 14 14 0 -6.84205858977283 LTS-021 chr12 52794349 52818504 24156 * c(KRT82, KRT75) 0.485 1 NA 0.822800818372483 41 0.26603819641401 2 2 0 -5.76484973743631 LTS-021 chr12 52818505 53004654 186150 * c(KRT71, KRT74, KRT72, KRT6C, KRT73, KRT5, KRT6A, KRT6B, KRT75) 0.34880226497496 25 0.150120695886121 0.872766815837061 550 0.415527931884076 3 2 1 -6.73734556667586 LTS-021 chr12 53004655 53007636 2982 * KRT73 0 1 NA 1.11212650756624 8 1.04803454652711 4 4 0 -5.76441068276402 LTS-021 chr12 53007637 53240646 233010 * c(KRT78, KRT73, KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT76) 0.129630412729 23 0.21226451728078 0.897915762452819 585 0.639711907455576 6 6 0 -6.83295978217744 LTS-021 chr12 53240647 53298769 58123 * c(KRT78, KRT8) 0.473 1 NA 0.972935309455363 57 0.583567411323574 3 3 0 -5.76454131932083 LTS-021 chr12 53298770 53720494 421725 * c(SP7, EIF4B, TNS2, LOC283335, ZNF740, IGFBP6, ITGB7, KRT8, KRT18, CSAD, PFDN5, RARG, C12orf10, AAAS, SOAT2, SPRYD3, MFSD5, ESPL1) 0.37633953104987 16 0.185669419488868 1.04023602016345 1334 0.601757196935992 4 2 2 -6.74082313041013 LTS-021 chr12 53720495 53721701 1207 * SP7 0 1 NA 1.09663065667491 25 0.420737099227851 4 4 0 -5.76441021076134 LTS-021 chr12 53721702 54340155 618454 * c(LOC100652999, HOXC13-AS, ATF7, SP7, AMHR2, HOXC13, PCBP2, ATP5G2, PRR13, CALCOCO1, SP1, TARBP2, MAP3K12, NPFF) 0.148022809200453 17 0.215746123269648 1.09028751783262 963 0.676024787294372 5 5 0 -6.78281408509672 LTS-021 chr12 54340156 54370108 29953 * c(HOTAIR, HOXC11, HOXC12, HOXC13) 0.486 1 NA 1.03034436028911 77 0.60944931498236 4 4 0 -5.7645730869 LTS-021 chr12 54370109 54745525 375417 * c(LOC100240734, LOC100240735, MIR3198-2, COPZ1, CBX5, SMUG1, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, MIR615) 0.356402050161339 14 0.164555428385055 1.06737991084502 836 0.60368905579634 4 2 2 -6.73337695446651 LTS-021 chr12 54745526 54769559 24034 * c(COPZ1, ZNF385A, GPR84) 0 1 NA 1.077400299819 105 0.639674343657822 4 4 0 -5.76441644016672 LTS-021 chr12 54769560 55041081 271522 * c(DCD, GTSF1, ZNF385A, NCKAP1L, ITGA5, PDE1B, PPP1R1A, GLYCAM1, LACRT) 0.140258982684742 8 0.225873542370188 0.958014498952722 638 0.475144850451416 5 5 0 -6.82480006846226 LTS-021 chr12 55041082 55042015 934 * DCD NA 0 NA 0.561 1 NA NA NA NA NA LTS-021 chr12 55042016 56031664 989649 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.222379753487677 16 0.216934398686177 0.52206477393067 648 0.334531292629086 0 0 0 -6.99755083351212 LTS-021 chr12 56031665 56031668 4 * character(0) 0 1 NA 4.462 1 NA NA NA NA NA LTS-021 chr12 56031669 56031705 37 * character(0) 0.14133956282964 2 0.264457936163769 2.506 2 1.63341666454092 16 15 1 -6.73305131033489 LTS-021 chr12 56031706 56078189 46484 * METTL7B 0.441 1 NA 0.919895443587479 29 0.403134867848065 3 3 0 -5.76448061017962 LTS-021 chr12 56078190 56120096 41907 * c(BLOC1S1-RDH5, METTL7B, BLOC1S1, ITGA7, RDH5, CD63) 0.46181881722689 12 0.0476823453765234 0.991941781271472 299 0.512366879706758 4 2 2 -8.74774107809422 LTS-021 chr12 56120097 56182848 62752 * c(GDF11, SARNP, DNAJC14, CD63) 0 1 NA 1.04858946018789 139 0.478533340381131 4 4 0 -5.76467956220052 LTS-021 chr12 56182849 56633602 450754 * c(CDK2, RNF41, MYL6B, DGKA, ERBB3, ESYT1, ANKRD52, SLC39A5, ORMDL2, MMP19, MYL6, PA2G4, RAB5B, RPL41, RPS26, IKZF4, PMEL, SMARCC2, SUOX, NABP2, PYM1, SARNP, ZC3H10, DNAJC14) 0.17552148730114 20 0.209864085089675 1.05491070572159 1912 0.571867045701191 5 5 0 -6.76426228277032 LTS-021 chr12 56633603 56633732 130 * ANKRD52 0.412 1 NA 1.30132137562747 3 1.18704689601268 5 5 0 -5.76441024182841 LTS-021 chr12 56633733 57114307 480575 * c(CNPY2, PTGES3, BAZ2A, CS, SNORD59A, GLS2, ANKRD52, SPRYD4, APOF, MIP, NACA, ATP5B, IL23A, RBMS2, STAT2, SNORD59B, TIMELESS, COQ10A, PAN2) 0.366561853722179 38 0.165576573545203 1.00994419036949 1664 0.572980646499118 4 2 2 -6.74015760750225 LTS-021 chr12 57114308 57133087 18780 * c(NACA, PRIM1) 0 1 NA 1.15325706318645 45 0.4739234829345 4 4 0 -5.76456002691131 LTS-021 chr12 57133088 57176026 42939 * c(PRIM1, HSD17B6) 0.497 1 NA 1.09632533390803 78 0.525740386863093 4 4 0 -5.76441165335112 LTS-021 chr12 57176027 57178649 2623 * HSD17B6 NA 0 NA 0.644 1 NA NA NA NA NA LTS-021 chr12 57178650 57924238 745589 * c(MIR1228, DCTN2, NXPH4, GPR182, MBD6, SDR9C7, DDIT3, R3HDM2, NEMP1, STAC3, GLI1, INHBC, LRP1, MARS, MYO1A, NAB2, NDUFA4L2, ARHGAP9, SHMT2, STAT6, TAC3, INHBE, RDH16, HSD17B6, ZBTB39) 0.15876891827644 35 0.218358844276914 0.955383219632485 2300 0.48568827132476 4 4 0 -6.82384153171109 LTS-021 chr12 57924239 57958313 34075 * c(DCTN2, KIF5A) 0.435 1 NA 0.985941909053154 129 0.494390058841203 3 3 0 -5.76461155021363 LTS-021 chr12 57958314 58026159 67846 * c(ARHGEF25, DTX3, B4GALNT1, KIF5A, SLC26A10, PIP4K2C) 0.347505841120631 14 0.19541650362779 0.907211415154182 555 0.395043959344135 3 2 1 -6.73411687709278 LTS-021 chr12 58026160 58110542 84383 * c(OS9, B4GALNT1) 0 1 NA 0.994193132108585 53 0.357414029976977 3 3 0 -5.76571595394718 LTS-021 chr12 58110543 58216768 106226 * c(AGAP2-AS1, TSFM, CTDSP2, CDK4, AVIL, OS9, AGAP2, CYP27B1, METTL21B, METTL1, TSPAN31, MARCH9) 0.154759341487202 9 0.227033832525267 0.884469450892302 838 0.493151541829036 5 5 0 -6.78794936054222 LTS-021 chr12 58216769 58216989 221 * CTDSP2 0.478 1 NA 0.992706323668704 5 0.0957298281623863 3 3 0 -5.76445515935763 LTS-021 chr12 58216990 59314301 1097312 * c(LOC100506844, CTDSP2, LRIG3, MIR26A2, ATP23) 0.397824795811858 22 0.107291497183912 0.955811126026377 324 0.434873848054431 3 2 1 -6.83014877727757 LTS-021 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.071 1 NA NA NA NA NA LTS-021 chr12 59445677 59917126 471450 * character(0) 0.418 1 NA 0.351737582791823 3 0.258571073401492 0 0 0 -6.14385012203805 LTS-021 chr12 59917127 60174455 257329 * SLC16A7 0 1 NA 0.665878530741385 87 0.403151989118072 1 1 0 -5.76694241551667 LTS-021 chr12 60174456 62652686 2478231 * c(FAM19A2, SLC16A7) 0 3 0 0.59641043602603 136 0.372920594604501 0 0 0 -Inf LTS-021 chr12 62652687 62654132 1446 * c(FAM19A2, USP15) NA 0 NA 2.622 1 NA NA NA NA NA LTS-021 chr12 62654133 63041188 387056 * c(MON2, LINC01465, MIRLET7I, PPM1H, USP15) 0.186481106600105 7 0.250998671975238 0.983165327538439 580 0.631027684579099 4 4 0 -6.75464937523849 LTS-021 chr12 63041189 63359168 317980 * PPM1H 0.481 1 NA 1.11438685139486 79 0.649470312727667 4 4 0 -5.76459793415579 LTS-021 chr12 63359169 64521724 1162556 * c(TMEM5, DPY19L2, AVPR1A, SRGAP1) 0.439560127312815 10 0.0446777349470628 0.788612447241178 361 0.465094422347747 2 1 1 -8.27910236188376 LTS-021 chr12 64521725 64536319 14595 * SRGAP1 0 1 NA 1.14512285097252 15 0.93020257394367 4 4 0 -5.76443304859443 LTS-021 chr12 64536320 66358242 1821923 * c(MIR548Z, WIF1, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, TBK1, FLJ41278, SRGAP1, MIR548C, HMGA2) 0.159342602443729 29 0.216335325146875 1.04971163923031 1707 0.702730464499177 4 4 0 -6.79372433432519 LTS-021 chr12 66358243 66529936 171694 * c(HMGA2, LLPH) 0.434 1 NA 1.09311410812626 85 0.523459675823158 4 4 0 -5.76441059218857 LTS-021 chr12 66529937 66741210 211274 * c(IRAK3, TMBIM4, LLPH, HELB) 0.359681724234733 11 0.187864748253534 0.974126145164659 407 0.421130258894428 3 2 1 -6.73445385860582 LTS-021 chr12 66741211 66741547 337 * GRIP1 0 1 NA 1.24338319194563 10 0.331602523110626 5 5 0 -5.76441013810282 LTS-021 chr12 66741548 67699848 958301 * c(GRIP1, CAND1) 0.110524255673763 9 0.20946227451368 0.839533961711678 263 0.493855230164626 3 3 0 -7.0504961323749 LTS-021 chr12 67699849 67707441 7593 * CAND1 0.443 1 NA 0.925398705912755 53 0.212920096148712 3 3 0 -5.7644306828181 LTS-021 chr12 67707442 70290921 2583480 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, RAB3IP, CPM, BEST3, IFNG, LRRC10, LYZ, MDM2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, DYRK2) 0.265353561890714 63 0.211669695298675 0.902114613823168 2051 0.607313277908031 3 3 0 -6.74017242254461 LTS-021 chr12 70290922 70352448 61527 * character(0) 0 1 NA 0.836007328262565 81 0.558879477775855 2 2 0 -5.76486820969598 LTS-021 chr12 70352449 72029348 1676900 * c(ZFC3H1, KCNMB4, CNOT2, PTPRB, PTPRR, TSPAN8, LGR5) 0.124949443817641 24 0.206018427310045 0.923020882636531 1051 0.503545188463551 3 3 0 -6.97888671014326 LTS-021 chr12 72029349 72058798 29450 * c(ZFC3H1, THAP2) 0.436 1 NA 1.01699463311672 93 0.607142851996339 4 4 0 -5.76465227291394 LTS-021 chr12 72058799 72319408 260610 * c(RAB21, TMEM19, TBC1D15, MRS2P2, THAP2) 0.350156961262311 16 0.184603618148002 1.02875537345959 494 0.454054808285212 4 2 2 -6.73667757071293 LTS-021 chr12 72319409 78225186 5905778 * c(LOC100507377, GLIPR1, KRR1, OSBPL8, TPH2, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, TRHDE-AS1, TRHDE, KCNC2, NAP1L1, ATXN7L3B, TBC1D15, BBS10, CAPS2, NAV3) 0.305223356262506 49 0.208437981200171 0.830462146866956 1944 0.472569159372124 2 2 0 -6.78204847661367 LTS-021 chr12 78225187 78362418 137232 * NAV3 0 1 NA 1.02340557059375 25 0.634941317498449 4 4 0 -5.76526739199828 LTS-021 chr12 78362419 78606766 244348 * NAV3 0.124053558846789 6 0.244551562388521 0.810292212340125 297 0.457271915738442 4 4 0 -6.89824867734703 LTS-021 chr12 79611223 88423110 8811888 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, RASSF9) 0.131035634800986 46 0.168741492539173 0.590013522912715 2581 0.344625581779319 1 1 0 -7.76468021382303 LTS-021 chr12 88423111 102872451 14449341 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, C12orf50, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, SLC17A8, LINC01619, UTP20, POC1B, GAS2L3, MRPL42, HAL, APAF1, LINC00936, C12orf74, IGF1, ARL1, LTA4H, LUM, MIR135A2, KITLG, NA NA NA NA NA NA NA NA NA LTS-021 LINC00615, PLEKHG7, MIR331, MYBPC1, ATP2B1, SYCP3, CCDC53, CEP83, CDK17, SLC25A3, PMCH, PARPBP, DRAM1, VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TMPO, NR2C1, LOC728084, UBE2N, NUP37, GNPTAB, CEP290, USP44, EEA1, GALNT4, CRADD, SOCS2, C12orf29, NR1H4) 0.15933391505264 148 0.162523227157512 0.66431870742493 8446 0.389626227873505 1 1 0 -7.55324084144484 LTS-021 NA NA NA NA LTS-021 chr12 102872452 102874063 1612 * IGF1 NA 0 NA 0.343 1 NA NA NA NA NA LTS-021 chr12 102874064 104119913 1245850 * c(LINC00485, IGF1, C12orf42, ASCL1, PAH, STAB2) 0.0879613115927092 11 0.154774087565775 0.511316769526822 499 0.362098220552092 0 0 0 -8.1834682320556 LTS-021 chr12 104119914 104120944 1031 * STAB2 NA 0 NA 0.916 1 NA NA NA NA NA LTS-021 chr12 104120945 108961828 4840884 * c(LOC100287944, MIR3652, MIR3922, LOC100505978, CKAP4, PRDM4, PWP1, FICD, C12orf45, ASCL4, BTBD11, CMKLR1, CRY1, ALDH1L2, KIAA1033, ISCU, TTC41P, TCP11L2, HCFC2, C12orf75, NFYB, EID3, CHST11, NT5DC3, RIC8B, APPL2, STAB2, POLR3B, RFX4, TDG, HSP90B1, C12orf73, LOC728739, TXNRD1, MTERF2, GLT8D2, SLC41A2, TMEM263, WSCD2, SART3, NUAK1) 0.143755371886752 103 0.153936549461888 0.665894923101239 4091 0.637916969121459 2 2 0 -7.48472950102097 LTS-021 chr12 108961829 108961952 124 * ISCU NA 0 NA 1.138 1 NA NA NA NA NA LTS-021 chr12 108961953 109896347 934395 * c(USP30-AS1, ALKBH2, FOXN4, DAO, ISCU, CORO1C, MYO1H, ACACB, TMEM119, SSH1, SVOP, SELPLG, UNG, KCTD10, USP30) 0.159895792732966 39 0.154767986207277 0.808391771693363 1694 1.61748749477706 6 6 0 -6.80683491292185 LTS-021 chr12 109896348 109928731 32384 * c(KCTD10, UBE3B) 0 1 NA 0.824307519101845 105 0.339387666926096 2 2 0 -5.76480143089586 LTS-021 chr12 109928732 114386765 4458034 * c(LINC01405, SH2B3, MIR4497, ARPC3, TRAFD1, ERP29, SDS, SDSL, IQCD, RAD9B, FAM109A, PPTC7, CCDC63, DTX1, PLBD2, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, MMAB, CFAP73, C12orf76, MVK, MYL2, ATP2A2, OAS1, OAS2, OAS3, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, TPCN1, PPP1CC, PTPN11, TRPV4, RPL6, ATXN2, LHX5, DDX54, TCTN1, NAA25, SLC8B1, ACAD10, BRAP, TCHP, HVCN1, RASAL1, FAM222A, RITA1, FAM222A-AS1, NA NA NA NA NA NA NA NA NA LTS-021 MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, UBE3B, GIT2, RBM19) 0.0667545499862201 96 0.123639260215624 0.734170542488555 6485 0.448182317303171 2 2 0 -8.40729573014038 LTS-021 NA NA NA NA LTS-021 chr12 114386766 114393028 6263 * RBM19 0.368 1 NA 0.757456953116099 17 0.254881647852027 2 2 0 -5.76448681369578 LTS-021 chr12 114393029 123109294 8716266 * c(LINC00173, MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, TMEM233, MSI1, NOS1, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, TESC, ZCCHC8, PRKAB1, NA NA NA NA NA NA NA NA NA LTS-021 WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, CLIP1, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, TBX5, TBX3, HNF1A, MIR620, B3GNT4, C12orf49, RNF34, COQ5, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, KNTC1, MLEC, RBM19, RNF10) 0.139773631471783 166 0.142615668548945 0.766703388825521 7908 0.450728011325146 2 2 0 -7.4244149278402 LTS-021 NA NA NA NA LTS-021 chr12 123109295 123110715 1421 * KNTC1 NA 0 NA 0.47 1 NA NA NA NA NA LTS-021 chr12 123110716 123201383 90668 * c(HCAR2, HCAR3, KNTC1) 0.25 1 NA 0.38392198472797 105 0.317935662853801 0 0 0 -5.79073247119293 LTS-021 chr12 123201384 124809387 1608004 * c(MIR4304, MIR3908, LOC100507091, ZNF664-FAM101A, MPHOSPH9, TMED2, SNRNP35, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, NCOR2) 0.142554175226331 91 0.138244727349019 0.754307128343491 3023 0.457078259499841 3 3 0 -7.34590718211613 LTS-021 chr12 124809388 125612441 803054 * c(MIR5188, BRI3BP, DHX37, AACS, UBC, SCARB1, NCOR2) 0.212233527521288 38 0.106090463022078 0.905491406586411 936 0.869558625641079 4 4 0 -6.76609852557726 LTS-021 chr12 125612442 130916994 5304553 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, GLT1D1, RIMBP2, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, AACS, TMEM132C, PIWIL1) 0.117274891915568 41 0.153349115483306 0.575771253771364 1167 0.378301554047142 1 1 0 -8.00500678113446 LTS-021 chr12 130916995 130919306 2312 * RIMBP2 NA 0 NA 0.832 1 NA NA NA NA NA LTS-021 chr12 130919307 133618022 2698716 * c(LOC100130238, ZNF605, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.209226738436852 97 0.147429110316547 0.763285029664123 3189 0.485987234504313 2 2 0 -6.95853058925007 LTS-021 chr12 133618023 133634848 16826 * character(0) 0 1 NA 0.640933968627777 39 0.431758246633185 1 1 0 -5.76441994637879 LTS-021 chr12 133634849 133770224 135376 * c(ZNF891, ZNF268, ZNF10, ZNF140) 0.00648281883992528 10 0.0553398590529466 0.650517406248107 423 0.481029917140115 20 20 0 -8.42048481490704 LTS-021 chr12 133770225 133778702 8478 * ZNF268 NA 0 NA 0.306 1 NA NA NA NA NA LTS-021 chr12 133778703 133787341 8639 * ZNF268 0 1 NA 0.364279062131128 83 0.296900070851628 0 0 0 -5.76882624560233 LTS-021 chr12 133787342 133812708 25367 * ANHX NA 0 NA 0.496781269959608 99 0.212562260271802 0 NA NA -5.76484828568747 LTS-021 chr13 19271620 19943792 672173 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0 1 NA 0.438568249649687 86 0.31123297210851 0 0 0 -5.79689289598254 LTS-021 chr13 19943793 25525488 5581696 * c(MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, TPTE2P1, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.216294388221383 71 0.146496630598318 0.624655383435513 3295 0.427487852438869 1 1 0 -7.15603651417115 LTS-021 chr13 25525489 25525521 33 * TPTE2P1 NA 0 NA 0.322 1 NA NA NA NA NA LTS-021 chr13 25525522 25603532 78011 * TPTE2P1 0.361 1 NA 0.150370090790129 38 0.186386511639643 0 0 0 -7.18052989625687 LTS-021 chr13 25603533 25670213 66681 * character(0) NA 0 NA 1.175 1 NA NA NA NA NA LTS-021 chr13 25670214 25746320 76107 * c(AMER2, PABPC3) 0.0641532659651658 5 0.116275534829989 0.463361458671609 281 0.283453550968559 7 7 0 -7.87293006154162 LTS-021 chr13 25746321 31549661 5803341 * c(LINC00426, PAN3-AS1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, USPL1, CDK8, CDX2, WASF3, TEX26, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, RNF6, RPL21, SNORA27, URAD, SLC7A1, KATNAL1, MEDAG, MTMR6, NUP58) 0.11265285269364 71 0.140700844224164 0.632404727178948 3405 0.353506104481774 1 1 0 -8.02357965698532 LTS-021 chr13 31549662 31710749 161088 * character(0) NA 0 NA 0.326 1 NA NA NA NA NA LTS-021 chr13 31710750 32691588 980839 * c(FRY, HSPH1, RXFP2, B3GLCT, EEF1DP3) 0 1 NA 0.357499498325379 376 0.166148263085237 0 0 0 -7.19282197323317 LTS-021 chr13 32691589 32698360 6772 * FRY NA 0 NA 1.378 1 NA NA NA NA NA LTS-021 chr13 32698361 47325645 14627285 * c(TPT1-AS1, MIR548F5, MIR320D1, MIR4305, MINOS1P1, OR7E37P, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, TPTE2P5, MIR5006, LINC00563, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, SMIM2-IT1, FRY, SLC25A15, LHFP, MRPS31, N4BP2L2, POSTN, WBP4, AKAP11, EXOSC8, N4BP2L2-IT2, LINC00284, CSNK1A1L, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, STOML3, ELF1, ERICH6B, SPERT, PDS5B, VWA8, FOXO1, NA NA NA NA NA NA NA NA NA LTS-021 ZC3H13, SPG20, LRCH1, SLC25A30, NUFIP1, NBEA, SUGT1P3, SIAH3, RGCC, DNAJC15, GTF2F2, ALG5, FREM2, KCTD4, NHLRC3, SERP2, LCP1, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, ENOX1, GPALPP1, SUPT20H, COG6, RFC3, RFXAP, TSC22D1-AS1, ZAR1L, LINC00598, BRCA2, SNORA31, MIR621, TPT1, TRPC4, CCDC169, NAA16, RUBCNL, PROSER1, COG3, KBTBD7, TNFSF11, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, DCLK1, KL, EPSTI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 MTRF1) 0.180299744180333 158 0.155555261335625 0.635301563872534 7744 0.37856800544449 1 1 0 -7.33005550745149 LTS-021 NA NA NA NA LTS-021 chr13 47325646 47470995 145350 * c(ESD, LRCH1, HTR2A) 0.351 1 NA 0.29195973109881 120 0.123508143677338 0 0 0 -6.91574748600565 LTS-021 chr13 48516768 49047481 530714 * c(LINC00441, MED4-AS1, LPAR6, MED4, NUDT15, RB1, SUCLA2, ITM2B) 0.141110591007821 7 0.129081185232211 0.717780956336531 392 0.337348609019685 3 3 0 -7.39275559788841 LTS-021 chr13 49047482 49050861 3380 * RB1 NA 0 NA 0.327 1 NA NA NA NA NA LTS-021 chr13 49050862 49580359 529498 * c(LINC00462, RCBTB2, FNDC3A, CYSLTR2, RB1) 0.234681217989964 2 0.3153696244092 0.356153511034757 216 0.211647849781112 0 0 0 -7.39065434611214 LTS-021 chr13 49580360 51286237 1705878 * c(MIR3613, TRIM13, DLEU1, ARL11, ST13P4, CTAGE10P, FNDC3A, KCNRG, MLNR, KPNA3, MIR16-1, PHF11, RCBTB1, SPRYD7, CDADC1, CAB39L, SETDB2, EBPL, DLEU2) 0.210651492745902 41 0.151018283499779 0.703271628358932 1257 0.541132317762026 2 2 0 -6.97906851188702 LTS-021 chr13 51286238 51286336 99 * character(0) NA 0 NA 0.528 1 NA NA NA NA NA LTS-021 chr13 51286337 51397705 111369 * c(DLEU7-AS1, DLEU7) 0.443 1 NA 0.249871745061165 38 0.1581031857813 0 0 0 -6.7258536163398 LTS-021 chr13 51397706 51417303 19598 * c(DLEU7-AS1, DLEU7) NA 0 NA 2.129 1 NA NA NA NA NA LTS-021 chr13 51417304 52391341 974038 * c(MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, WDFY2, DLEU7, FAM124A, INTS6, LINC00282, GUCY1B2, LINC00371, SERPINE3, RNASEH2B, DHRS12) 0.183325674518202 6 0.144578928847418 0.651161181962132 574 0.329630042017407 2 2 0 -7.28469894702718 LTS-021 chr13 52391342 52439944 48603 * c(LINC00282, CCDC70) 0 1 NA 0.687324284762975 33 0.479568617313645 1 1 0 -5.76529067604154 LTS-021 chr13 52439945 70681608 18241664 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, MRPS31P5, OLFM4, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, PCDH17, OR7E156P, LINC00550, NEK5, ALG11, NEK3, PCDH8, PCDH9, VPS36, ATP7B, THSD1, KLHL1, ATXN8OS, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3, CCDC70, UTP14C) 0.0815029548088234 30 0.135230450389857 0.606519187300918 1911 0.404786432104311 1 1 0 -8.52545773847895 LTS-021 chr13 70681609 84453484 13771876 * c(MIR3665, RBM26-AS1, LINC00331, LINC00381, LINC00446, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, SPRY2, PIBF1, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, DACH1, COMMD6, EDNRB, DIS3, MYCBP2, FBXL3, LINC00347, LMO7, MZT1, POU4F1, NDFIP2, KLHL1, ATXN8OS, RBM26, CTAGE11P, KLF5, BTF3P11, LMO7DN, ACOD1, UCHL3, RNF219, BORA, SCEL, TBC1D4) 0.0825994940326781 59 0.116587232149045 1.08396522355389 3265 0.532766477068514 4 4 0 -7.53239683779279 LTS-021 chr13 84453485 84453606 122 * SLITRK1 NA 0 NA 0.594 1 NA NA NA NA NA LTS-021 chr13 84453607 94482600 10028994 * c(MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00559, SLITRK1, LINC00410, GPC5, SLITRK5, MIR19B1, MIR17HG, MIR4500HG, MIR622, SLITRK6) 0.0564666551842483 10 0.138610765975968 0.675091306567238 380 0.424198550502682 1 1 0 -8.7288545493781 LTS-021 chr13 94482601 101707124 7224524 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, GPC6, GPC6-AS2, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, ABCC4, SOX21, RNF113B, GPR180, DCT, CLYBL, GPR183, DZIP1, DOCK9, TGDS, NALCN, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, PCCA, UGGT2, DNAJC3, RAP2A, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, CLDN10, TM9SF2) 0.0926413565471566 76 0.112328030745794 0.970408418386141 3223 0.567502684388809 4 4 0 -7.66462499486424 LTS-021 chr13 101707125 103698226 1991102 * c(BIVM-ERCC5, MIR2681, MIR4705, NALCN-AS1, METTL21EP, METTL21C, ERCC5, FGF14, NALCN, FGF14-IT1, FGF14-AS2, BIVM, CCDC168, SLC10A2, TPP2, KDELC1, TEX30, ITGBL1) 0.0910480408609774 35 0.122541250129062 0.75238592302573 1449 0.435670885748708 3 3 0 -7.98573239656924 LTS-021 chr13 103698227 110406951 6708725 * c(MIR548AS, LINC00443, MYO16-AS1, TNFSF13B, LINC00343, EFNB2, MYO16, DAOA, DAOA-AS1, LINC00551, LIG4, ARGLU1, SLC10A2, LINC00460, FAM155A, ABHD13, IRS2) 0.117344403267247 16 0.161795137957439 0.617231265506971 833 0.330016077097062 1 1 0 -7.74285697125738 LTS-021 chr13 110406952 110406957 6 * IRS2 NA 0 NA 0.851 1 NA NA NA NA NA LTS-021 chr13 110406958 115090193 4683236 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, ATP11A, MCF2L, GAS6, LINC00346, CHAMP1, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, UPF3A, SOX1, TFDP1, CARS2, GRTP1, CUL4A, IRS2, PROZ, ARHGEF7, CDC16) 0.120754462836131 103 0.11175933969704 0.991383911947533 3851 0.53539679847115 4 4 0 -7.31717821405469 LTS-021 chr13 115090194 115092817 2624 * CHAMP1 NA 0 NA 0.657731966275627 53 0.332170927986073 1 NA NA -5.76443219979232 LTS-021 chr14 19434116 20215915 781800 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0 1 NA 1.10831711122156 27 0.556217793331204 4 4 0 -5.76474741995372 LTS-021 chr14 20215916 20404718 188803 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.311279687616206 9 0.157908201180306 0.936820044648136 181 0.397264285409138 2 2 0 -6.75820156559879 LTS-021 chr14 20404719 20404736 18 * OR4K1 0.47 1 NA 0.489 1 NA NA NA NA NA LTS-021 chr14 20404737 20712010 307274 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4K1, OR4K15) 0.124201910559834 5 0.21197924426698 0.499765202823918 274 0.606038170859214 3 3 0 -7.16030932145611 LTS-021 chr14 20712011 20754345 42335 * character(0) NA 0 NA 3.159 1 NA NA NA NA NA LTS-021 chr14 20754346 20757037 2692 * character(0) 0 3 0 0.960962454927843 49 0.511129686207374 0 0 0 -Inf LTS-021 chr14 20757038 20757804 767 * TTC5 0.37 1 NA 0.99458387186966 17 0.201522915059597 3 3 0 -5.76444794175026 LTS-021 chr14 20757805 20876142 118338 * c(SNORD126, PARP2, CCNB1IP1, TEP1, RPPH1, TTC5) 0.293986490701625 13 0.217259209476984 0.99950231291804 533 0.492345023827061 3 3 0 -6.74947802075053 LTS-021 chr14 20876143 20876164 22 * TEP1 NA 0 NA 0.686 1 NA NA NA NA NA LTS-021 chr14 20876165 21539068 662904 * c(EDDM3A, RNASE11, TPPP2, RNASE8, KLHL33, ANG, SLC39A2, APEX1, RNASE10, OR6S1, RNASE9, RNASE13, PNP, RNASE12, OSGEP, ARHGEF40, NDRG2, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, TEP1, RNASE7, TMEM55B) 0.353706438205974 36 0.182378315597003 0.783576209676683 1009 0.44993113670625 2 1 1 -6.73330580851769 LTS-021 chr14 21539069 21541147 2079 * ARHGEF40 NA 0 NA 2.061 1 NA NA NA NA NA LTS-021 chr14 21541148 21966287 425140 * c(SUPT16H, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, ARHGEF40, METTL3, RPGRIP1, CHD8, TMEM253, SNORD9, RAB2B, TOX4) 0.263869707708345 24 0.219047241116111 1.01907133294173 1162 0.541602413919365 3 3 0 -6.73915506777493 LTS-021 chr14 21966288 21966393 106 * c(METTL3, TOX4) NA 0 NA 0.467 1 NA NA NA NA NA LTS-021 chr14 21966394 22038659 72266 * c(OR10G3, METTL3, SALL2, TOX4) 0.456211698711051 6 0.0373242548485566 0.832921152801871 213 0.388771108948188 2 1 1 -9.35797568491054 LTS-021 chr14 22038660 22090520 51861 * OR10G3 0 1 NA 0.761412658187658 23 0.512303470464336 2 2 0 -5.76452556690482 LTS-021 chr14 22090521 23834887 1744367 * c(BCL2L2-PABPN1, MIR4707, EFS, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, OR10G2, OR4E2, MMP14, OXA1L, SLC22A17, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, BCL2L2, C14orf93, ABHD4, CDH24, PABPN1, AJUBA, SLC7A7, PPP1R3E) 0.214876966024545 96 0.16043297467801 0.722868545618688 3312 0.391881290950626 2 2 0 -6.94459076243625 LTS-021 chr14 23834888 23886409 51522 * c(CMTM5, MIR208A, MYH6, MYH7, IL25) 0.160756603284225 15 0.129504109146059 0.54439615401637 312 0.3349981168646 5 5 0 -6.97229992768745 LTS-021 chr14 23886410 23896494 10085 * c(MIR208B, MYH7) 0 1 NA 0.640961068580822 95 0.362137466861433 1 1 0 -5.76441854631266 LTS-021 chr14 23896495 24025883 129389 * c(NGDN, MYH7, THTPA, ZFHX2) 0 5 0 0.550054829741424 430 0.53913747975266 0 0 0 -Inf LTS-021 chr14 24025884 24025979 96 * THTPA NA 0 NA 0.798 1 NA NA NA NA NA LTS-021 chr14 24025980 24529896 503917 * c(DHRS2, DHRS4, DHRS4L2, DHRS4-AS1, DHRS4L1, THTPA, JPH4, AP1G2, CARMIL3) 0.037993938947205 6 0.0967548448399355 0.638598253878045 585 0.441786496935838 7 7 0 -8.62476492119815 LTS-021 chr14 24529897 24563212 33316 * c(NRL, CARMIL3, CPNE6) 0.329 1 NA 0.626448459004328 227 0.307514290383245 1 1 0 -5.76442880981704 LTS-021 chr14 24563213 32737228 8174016 * c(MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, MIR548AI, IRF9, TM9SF1, RIPK3, AP4S1, DTD2, DHRS1, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, LINC01551, ARHGAP5, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, RNF31, G2E3, PRKD1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, MIR624, NA NA NA NA NA NA NA NA NA LTS-021 TGM1, IPO4, NUBPL, DCAF11, ARHGAP5-AS1, REC8) 0.202322366415188 107 0.145350572500129 0.670450539721538 4689 0.369154064561479 1 1 0 -7.37099070945337 LTS-021 NA NA NA NA LTS-021 chr14 32737229 32902814 165586 * AKAP6 NA 0 NA 0.322510497023492 84 0.153306933701076 0 NA NA -6.36318211856655 LTS-021 chr14 32902815 32902913 99 * AKAP6 NA 0 NA 0.421 1 NA NA NA NA NA LTS-021 chr14 32902914 34417716 1514803 * c(EGLN3, NPAS3, AKAP6) 0.194571178832388 16 0.108924878547863 0.582604220881909 518 0.319995349544121 1 1 0 -7.74301817195101 LTS-021 chr14 34417717 34902577 484861 * c(EGLN3, SPTSSA) 0 1 NA 0.569206409099059 71 0.38648000825487 1 1 0 -5.78589720951158 LTS-021 chr14 34902578 47770683 12868106 * c(SNORD127, SLC25A21-AS1, LOC100288846, LINC00871, MIR4503, PTCSC3, LINC00609, SEC23A, CFL2, BAZ1A, NA, C14orf28, TRAPPC6B, RPL10L, MIPOL1, LRFN5, CLEC14A, MDGA2, SPTSSA, FKBP3, FAM179B, RALGAPA1, SFTA3, FBXO33, NKX2-8, IGBP1P1, LINC00639, FAM177A1, FOXA1, MIA2, NFKBIA, PAX9, MBIP, PNN, KLHL28, PPP2R3C, PRPF39, MIS18BP1, EAPP, PSMA6, FANCM, SNX6, SRP54, SSTR1, NKX2-1, FSCB, BRMS1L, INSM2, GEMIN2, SLC25A21, NA NA NA NA NA NA NA NA NA LTS-021 KIAA0391) 0.0947310943162231 63 0.138693854049304 0.65071309212105 4160 0.430284202033078 1 1 0 -8.25563419770226 LTS-021 NA NA NA NA LTS-021 chr14 47770684 48230210 459527 * c(MIR548Y, MDGA2) NA 0 NA 0.464162145442392 27 0.271347891207354 0 NA NA -5.76820605363956 LTS-021 chr14 50043415 50043520 106 * c(RPS29, NEMF) 0.41 1 NA 1.0350009955079 3 0.446178215514832 4 4 0 -5.76441104129745 LTS-021 chr14 50043521 50101682 58162 * c(LRR1, MGAT2, DNAAF2, RPL36AL, RPS29, NEMF) 0.420083795172687 11 0.139634522951883 0.947831306473925 227 0.664711683952326 4 2 2 -6.85267010132878 LTS-021 chr14 50101683 50141077 39395 * c(POLE2, DNAAF2, NEMF) 0 1 NA 1.15252761516378 69 0.652905124059398 4 4 0 -5.76457199477386 LTS-021 chr14 50141078 50952374 811297 * c(NA, MAP4K5, KLHDC1, LINC01599, KLHDC2, ATP5S, LINC01588, ARF6, POLE2, SOS2, VCPKMT, L2HGDH, CDKL1, NEMF) 0.208901263838646 13 0.217163208150826 1.06007269351349 1164 0.617235459805567 4 4 0 -6.7380827457192 LTS-021 chr14 50952375 50952741 367 * MAP4K5 NA 0 NA 0.352 1 NA NA NA NA NA LTS-021 chr14 50952742 53244297 2291556 * c(FRMD6-AS2, MAP4K5, TRIM9, FRMD6, FRMD6-AS1, ABHD12B, NID2, LINC00640, GPR137C, ERO1A, ATL1, NIN, C14orf166, GNG2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, GNPNAT1, STYX, TMX1) 0.170022376620557 39 0.217447410925535 0.905503424763224 2207 0.495586512639477 3 3 0 -6.83966147728778 LTS-021 chr14 53244298 53348540 104243 * c(FERMT2, GNPNAT1) 0.468 1 NA 0.94836345988775 131 0.525820388679357 3 3 0 -5.7644337283988 LTS-021 chr14 53348541 57101682 3753142 * c(KTN1-AS1, MIR4308, MIR5580, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, SOCS4, ATG14, SAMD4A, GCH1, GMFB, TBPL2, KTN1, LGALS3, TMEM260, FBXO34, PELI2, RPL13AP3, LINC00520, BMP4, DDHD1, MAPK1IP1L, DLGAP5) 0.288894279850924 34 0.217730425812335 0.968773569368365 2120 0.605042428053848 3 3 0 -6.75022864392979 LTS-021 chr14 57101683 57114693 13011 * TMEM260 0 1 NA 0.691973080885067 27 0.424233852755013 1 1 0 -5.7647620674631 LTS-021 chr14 57114694 57881891 767198 * c(OTX2-AS1, EXOC5, NAA30, OTX2, TMEM260, AP5M1) 0 11 0 0.873338124440836 515 0.458230941646553 0 0 0 -Inf LTS-021 chr14 57881892 58047219 165328 * c(SLC35F4, C14orf105) 0.493 1 NA 0.883823611917926 127 1.03816049083194 3 3 0 -5.76474441447169 LTS-021 chr14 58047220 59804999 1757780 * c(C14orf37, DAAM1, TIMM9, SLC35F4, PSMA3-AS1, TOMM20L, DACT1, ACTR10, PSMA3, ARID4A, KIAA0586) 0.297172817157399 24 0.2074727806488 0.95795531399482 916 0.573588499405247 3 3 0 -6.75432313261005 LTS-021 chr14 59805000 59830322 25323 * DAAM1 0 1 NA 1.11880740512442 41 0.312955233298279 4 4 0 -5.76450200429881 LTS-021 chr14 59830323 60865119 1034797 * c(L3HYPDH, DAAM1, LRRC9, JKAMP, DHRS7, PPM1A, RTN1, PCNX4, GPR135, CCDC175) 0.0814760227386625 16 0.164267046299615 0.908212976356721 1104 0.429833624802443 4 4 0 -7.27950344475149 LTS-021 chr14 60865120 60867038 1919 * character(0) NA 0 NA 0.338489904870872 43 0.185309205548806 0 NA NA -5.76845629818586 LTS-021 chr14 60867039 60899978 32940 * character(0) NA 0 NA 1.145 1 NA NA NA NA NA LTS-021 chr14 60899979 61518698 618720 * c(SLC38A6, C14orf39, MNAT1, SIX6, SIX4, TRMT5, SIX1) 0.142820948465558 10 0.212780037701953 0.973820038711362 683 0.441599726083049 4 4 0 -6.84923741191687 LTS-021 chr14 61518699 61642955 124257 * SLC38A6 0.474 1 NA 1.54445744195729 21 0.566367413980578 7 7 0 -5.76441488180623 LTS-021 chr14 61642956 64009521 2366566 * c(HIF1A-AS2, GPHB5, TMEM30B, KCNH5, HIF1A, FLJ22447, PPP2R5E, PRKCH, RHOJ, LINC00643, SNAPC1, SYT16) 0.293226035994065 10 0.218783099083189 0.901362302398607 905 0.53218819541913 3 3 0 -6.75572193971292 LTS-021 chr14 64009522 64066431 56910 * c(WDR89, PPP2R5E) 0.333 1 NA 0.892003264694662 63 0.438375141832835 3 3 0 -5.76487325023796 LTS-021 chr14 64066432 64596901 530470 * c(WDR89, SYNE2, SGPP1) 0.0495351788743928 9 0.163333333333333 0.974705444830782 567 0.465271715568903 6 6 0 -7.27911474504297 LTS-021 chr14 64596902 64604595 7694 * SYNE2 0.421 1 NA 1.22736780034283 17 0.406149313314552 5 5 0 -5.76441588565849 LTS-021 chr14 64604596 65414738 810143 * c(CHURC1-FNTB, PPP1R36, ESR2, ZBTB1, SYNE2, PLEKHG3, GPX2, HSPA2, RAB15, TEX21P, MTHFD1, SPTB, ZBTB25, CHURC1, AKAP5) 0.300276800109511 56 0.203311248179641 0.987268759352561 1610 0.544717747370528 3 3 0 -6.76152021689287 LTS-021 chr14 65414739 65415421 683 * c(CHURC1-FNTB, RAB15) 0 1 NA 1.07845267732301 13 0.40698410792384 4 4 0 -5.76441051451925 LTS-021 chr14 65415422 68244466 2829045 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, FAM71D, TMEM229B, EIF2S1, FNTB, ZFYVE26, FUT8, PLEK2, RAB15, ARG2, MAX, LINC00238, RDH11, ATP6V1D, PIGH, PLEKHH1, MPP5, FUT8-AS1) 0.10088222690589 36 0.195436091531262 0.913552138800006 1780 0.549475038894261 3 3 0 -7.107370658993 LTS-021 chr14 68244467 68249499 5033 * ZFYVE26 0.489 1 NA 1.0610794313101 24 0.383238630393763 4 4 0 -5.76442699705767 LTS-021 chr14 68249500 69697289 1447790 * c(ACTN1-AS1, ZFYVE26, EXD2, RAD51B, ZFP36L1, ACTN1, DCAF5) 0.407623643410912 14 0.126756689140093 1.03924608338124 792 0.545521881366269 4 2 2 -6.83242785801184 LTS-021 chr14 69697290 69708107 10818 * EXD2 0 1 NA 1.02315290478548 42 0.490288967035037 4 4 0 -5.76452433998898 LTS-021 chr14 69708108 70517900 809793 * c(LOC100289511, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SMOC1, SRSF5, SLC8A3, SLC10A1, SUSD6) 0.167789076486848 20 0.222823856560808 1.0624282594313 805 0.640748647540845 4 4 0 -6.77527413256763 LTS-021 chr14 70517901 70518677 777 * SLC8A3 NA 0 NA 0.344 1 NA NA NA NA NA LTS-021 chr14 70518678 70991428 472751 * c(SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SLC8A3, ADAM21, ADAM20) 0.0705022810455983 5 0.21600416662648 0.625834678629257 319 0.558012798080574 4 4 0 -7.30039142551609 LTS-021 chr14 70991429 73412641 2421213 * c(MED6, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, SNORD56B, MAP3K9, DPF3, ADAM20, RGS6) 0.189624681439709 39 0.222478912251838 0.945933861865437 1303 0.580352740600621 3 3 0 -6.79148310380866 LTS-021 chr14 73412642 73425462 12821 * DCAF4 0.442 1 NA 1.01564828283061 71 0.767027564634712 4 4 0 -5.76447866663526 LTS-021 chr14 73425463 73740649 315187 * c(DCAF4, ZFYVE1, PSEN1, RBM25, PAPLN) 0.370393313394732 13 0.174593630747046 1.00764942091188 619 0.511348167548621 4 2 2 -6.74094559578498 LTS-021 chr14 73740650 73741183 534 * PAPLN 0 1 NA 0.86647180094582 13 0.697922797141081 3 3 0 -5.76441434657506 LTS-021 chr14 73741184 73989983 248800 * c(HEATR4, NUMB, PAPLN) 0.134518716648348 4 0.2435 0.991357613249258 255 0.484528100103623 5 5 0 -6.80981880500351 LTS-021 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.601 1 NA NA NA NA NA LTS-021 chr14 74003792 74042343 38552 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.533981445415273 89 0.470816645670747 0 NA NA -5.76563328217014 LTS-021 chr14 74042344 74058319 15976 * c(ACOT2, ACOT1) NA 0 NA 1.085 1 NA NA NA NA NA LTS-021 chr14 74058320 74728735 670416 * c(MIR4505, ACOT4, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, ZNF410, ACOT6, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.0553348780647178 9 0.149333333333333 0.957895556093753 1327 0.880900946739857 8 8 0 -7.12972916408803 LTS-021 chr14 74728736 74872926 144191 * c(VSX2, VRTN, ABCD4, SYNDIG1L) 0.5 1 NA 0.891307891591449 207 0.468406518950133 3 3 0 -5.7654694218932 LTS-021 chr14 74872927 74965769 92843 * c(MIR4709, NPC2, ISCA2, LTBP2, SYNDIG1L) 0.331963217000299 14 0.193278936391805 0.963834255068924 218 0.479506750017196 4 3 1 -6.73691946245997 LTS-021 chr14 74965770 74978070 12301 * LTBP2 0 1 NA 1.0709360830845 129 0.553707265574159 4 4 0 -5.76441918873018 LTS-021 chr14 74978071 75264300 286230 * c(LTBP2, FCF1, YLPM1, AREL1) 0.102122809573132 12 0.210752385945731 0.996338781418336 434 0.674320282923372 7 7 0 -6.85631332221122 LTS-021 chr14 75264301 75278302 14002 * YLPM1 0.475 1 NA 0.825542236569877 69 0.285849396077465 2 2 0 -5.76466368049353 LTS-021 chr14 75278303 75601516 323214 * c(TMED10, DLST, MLH3, PROX2, PGF, YLPM1, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1) 0.228744689027108 21 0.231420931678722 0.964498858568795 981 0.46152007556934 3 3 0 -6.74410726201675 LTS-021 chr14 75601517 75705863 104347 * TMED10 0.38 1 NA 1.15849602723534 47 0.397360083649208 4 4 0 -5.76579922704247 LTS-021 chr14 75705864 76088479 382616 * c(BATF, JDP2, FOS, FLVCR2, LINC01220) 0.426082049518288 16 0.117043421429827 0.968142305024891 274 0.604885332224191 4 2 2 -6.94116862827789 LTS-021 chr14 76088480 76099282 10803 * FLVCR2 0 1 NA 0.698280939000716 25 0.815572921325862 1 1 0 -5.76450593277359 LTS-021 chr14 76099283 77843378 1744096 * c(MIR1260A, C14orf1, IFT43, LRRC74A, ESRRB, VASH1, TTLL5, ANGEL1, ZDHHC22, TMED8, GSTZ1, POMT2, FLVCR2, GPATCH2L, TMEM63C, NGB, IRF2BPL, TGFB3, CIPC) 0.0617107850715947 33 0.158943374231584 0.947063141283719 1997 0.543400530743145 4 4 0 -7.38810390361426 LTS-021 chr14 77843379 77948645 105267 * c(AHSA1, NOXRED1, ISM2, SAMD15, TMED8, VIPAS39) 0 1 NA 0.941102821758117 352 0.581961990686389 3 3 0 -5.76441132575361 LTS-021 chr14 77948646 78023519 74874 * c(ISM2, SPTLC2) 0.341330548023891 9 0.205386830152276 0.974125957898575 201 0.406606673231537 3 2 1 -6.73589243536721 LTS-021 chr14 78023520 78200351 176832 * c(SNW1, SLIRP, ALKBH1, SPTLC2) 0 1 NA 0.989644049139433 193 1.04434521415465 3 3 0 -5.76468152957631 LTS-021 chr14 78200352 80668384 2468033 * c(DIO2, SNW1, C14orf178, ADCK1, NRXN3) 0 9 0 0.853642328951618 506 0.463031204758014 0 0 0 -Inf LTS-021 chr14 80668385 80669580 1196 * DIO2 0.397 1 NA 0.465533240265356 25 0.260555803364014 0 0 0 -5.7644189550199 LTS-021 chr14 80669581 86092261 5422681 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GTF2A1, SEL1L, SNORA79, TSHR, STON2) 0.135162639183208 21 0.211110307433725 0.920940063599309 995 0.534331983232624 3 3 0 -6.93765428944863 LTS-021 chr14 86092262 86094035 1774 * FLRT2 0.477 1 NA 0.956328054011621 39 0.360349343169662 3 3 0 -5.76441296155032 LTS-021 chr14 86094036 90262313 4168278 * c(PTPN21, FOXN3, TTC8, EML5, FLRT2, GALC, LOC283585, LINC01146, FOXN3-AS2, FOXN3-AS1, KCNK10, SPATA7, ZC3H14, GPR65) 0.296205019987352 56 0.205408682747473 0.896750958666187 1436 0.536196087571571 3 3 0 -6.77053378372204 LTS-021 chr14 90262314 90390174 127861 * EFCAB11 0 1 NA 0.79486066527368 67 0.8533467544915 2 2 0 -5.76442477343309 LTS-021 chr14 90390175 91690157 1299983 * c(SNORA11B, TTC7B, LINC00642, NRDE2, TDP1, KCNK13, PSMC1, C14orf159, CALM1, EFCAB11, RPS6KA5) 0.136686271228274 10 0.22849108905552 0.944523964808914 956 0.467991964593371 4 4 0 -6.89827474669993 LTS-021 chr14 91690158 91699418 9261 * c(C14orf159, GPR68) 0.489 1 NA 0.828158150638673 29 0.332841046990266 2 2 0 -5.76455008059624 LTS-021 chr14 91699419 92251587 552169 * c(TC2N, CCDC88C, PPP4R3A, CATSPERB, GPR68) 0.373976403791675 18 0.148029110809526 1.02715563617629 684 0.473270617712812 4 2 2 -6.74594981884482 LTS-021 chr14 92251588 92336122 84535 * c(FBLN5, TC2N) 0 1 NA 0.779452439068744 59 0.584214905255836 2 2 0 -5.76441914640202 LTS-021 chr14 92336123 92530024 193902 * c(FBLN5, ATXN3, TRIP11) 0.171224230047088 12 0.221092792119673 1.06695332989979 416 0.656153253515645 5 5 0 -6.75008243718326 LTS-021 chr14 92530025 92530282 258 * ATXN3 0.304 1 NA 0.963056467253262 7 0.245995257406859 3 3 0 -5.76441180292093 LTS-021 chr14 92530283 93429069 898787 * c(CHGA, SLC24A4, ITPK1, ATXN3, NDUFB1, CPSF2, LGMN, RIN3, GOLGA5) 0.363269972110382 38 0.168042728089397 1.01451542835666 942 0.934714383316836 4 2 2 -6.7370637883879 LTS-021 chr14 93429070 93669495 240426 * c(TMEM251, ITPK1-AS1, ITPK1, MOAP1, GON7) 0 1 NA 1.04506064508333 129 0.545201454703892 4 4 0 -5.76534325624059 LTS-021 chr14 93669496 93930873 261378 * c(COX8C, UBR7, BTBD7, UNC79, GON7) 0.0682894224104857 15 0.19486363974646 0.973129502800483 401 0.520159117200672 7 7 0 -6.99585580829084 LTS-021 chr14 93930874 93943998 13125 * UNC79 0.436 1 NA 0.600005677389585 21 0.23923495126081 1 1 0 -5.76478971462802 LTS-021 chr14 93943999 101013010 7069012 * c(LOC100129345, MIR3173, TUNAR, MIR5698, CYP46A1, PAPOLA, SERPINA3, AK7, IFI27L1, SLC25A29, DEGS2, GSC, SERPINA12, PRIMA1, SYNE3, EML1, DICER1, LINC00521, SERPINA11, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, CCDC85C, SERPINA9, IFI27, SERPINA13P, LINC01550, DICER1-AS1, MIR345, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, ASB2, SERPINA1, SERPINA4, ATG2B, C14orf132, DDX24, UNC79, BEGAIN, PPP4R4, BDKRB1, BDKRB2, NA NA NA NA NA NA NA NA NA LTS-021 BCL11B, VRK1, WARS, YY1, OTUB2, WDR25, LINC00341, CLMN, TCL1A, IFI27L2, SETD3, HHIPL1, SERPINA6, CCNK, FAM181A, TCL1B) 0.277031282579707 123 0.212653751795586 0.931189586496537 5462 0.537115425907638 3 3 0 -6.73817563278837 LTS-021 NA NA NA NA LTS-021 chr14 101013011 101034178 21168 * BEGAIN NA 0 NA 0.635 1 NA NA NA NA NA LTS-021 chr14 101034179 101459679 425501 * c(MIR665, MIR2392, LINC00523, RTL1, MIR127, MIR136, MIR337, MEG3, MIR433, MIR431, MIR493, MIR432, BEGAIN, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, NA NA NA NA NA NA NA NA NA LTS-021 SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR770, MEG8, DLK1) 0.37816868010935 11 0.189153809468283 0.662967272195216 418 0.295331911176025 1 1 0 -6.75985607170192 LTS-021 NA NA NA NA LTS-021 chr14 101459680 101488370 28691 * character(0) NA 0 NA 1.025 1 NA NA NA NA NA LTS-021 chr14 101488371 101531803 43433 * c(MIR300, MIR541, MIR543, MIR889, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR134, MIR154, MIR299, MIR323A, MIR376C, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR376B, MIR485, MIR494, MIR495, MIR496, MIR487A, MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, MIR758, MIR668) 0.053070297952929 6 0.192693193098943 0.853904073788631 158 0.503476089021514 12 12 0 -6.88944217363989 LTS-021 chr14 101531804 101531854 51 * MIR412 0.466 1 NA 1.50716577857795 3 0.47473922666379 7 7 0 -5.7644102462974 LTS-021 chr14 101531855 102828850 1296996 * c(MIR1247, MEG9, LINC00239, DIO3, DYNC1H1, HSP90AA1, MIR369, CINP, PPP2R5C, ZNF839, MIR412, MIR410, MOK, MIR656, WDR20) 0.409514644360978 23 0.133412863303587 0.945009090276088 1295 0.479297480003548 3 2 1 -6.83327516807501 LTS-021 chr14 102828851 102900889 72039 * c(CINP, TECPR2) 0 1 NA 0.752876209024871 72 0.46571869762853 2 2 0 -5.76476969397186 LTS-021 chr14 102900890 102901350 461 * TECPR2 0.411886734664299 2 0.00282842712474619 0.676789094891475 13 0.325483328967702 0 0 0 -19.6287658663328 LTS-021 chr14 102901351 102973892 72542 * c(ANKRD9, TECPR2) 0.130617073170426 9 0.234995744642323 1.13095162680293 192 0.685498409459663 8 8 0 -6.75242678656929 LTS-021 chr14 102973893 103005971 32079 * ANKRD9 0.5 1 NA 1.32956958115814 9 0.192671352307498 6 6 0 -5.7657258925384 LTS-021 chr14 103005972 104205123 1199152 * c(LINC00605, MIR4309, CKB, TRMT61A, EIF5, RCOR1, PPP1R13B, KLC1, MARK3, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, AMN, APOPT1, EXOC3L4, BAG5, CDC42BPB) 0.344112491108952 50 0.17316813111151 1.07178682367222 1812 0.573847341894401 4 3 1 -6.73555509294097 LTS-021 chr14 104205124 104212905 7782 * PPP1R13B 0 1 NA 0.985835335572419 49 0.40037011044799 3 3 0 -5.76447996038797 LTS-021 chr14 104212906 104578455 365550 * c(TDRD9, LINC00637, PPP1R13B, ASPG, RD3L, C14orf2) 0.137099179207338 9 0.202567752725957 1.04908111843615 412 0.577959355701292 5 5 0 -6.81073545919837 LTS-021 chr14 104578456 104578818 363 * ASPG NA 0 NA 0.655 1 NA NA NA NA NA LTS-021 chr14 104578819 105174084 595266 * c(MIR203B, MIR4710, KIF26A, ASPG, TMEM179, C14orf180, MIR203A, INF2) 0.116043712118109 15 0.206546731712105 0.813843471441859 458 0.554641957992837 4 4 0 -6.99852635602679 LTS-021 chr14 105174085 105179194 5110 * INF2 0.474 1 NA 0.881346575871167 45 0.33078492050933 3 3 0 -5.76452158752701 LTS-021 chr14 105179195 105241378 62184 * c(SIVA1, ADSSL1, AKT1, INF2) 0.364203774533036 11 0.186350403077838 0.952008225507894 260 0.69230254622052 3 2 1 -6.73464968747452 LTS-021 chr14 105241379 105246562 5184 * AKT1 0 1 NA 1.11489780220255 17 1.08327274755171 4 4 0 -5.76441128507278 LTS-021 chr14 105246563 105643113 396551 * c(ZBTB42, AHNAK2, C14orf79, PLD4, LINC00638, AKT1, NUDT14, CEP170B, GPR132, JAG2, CDCA4) 0.00381368386129525 11 0.00647231867964712 0.900643887921405 1099 0.511857797371091 20 20 0 -17.8237928010992 LTS-021 chr14 105643114 105686520 43407 * c(NUDT14, BRF1) NA 0 NA 0.965183233060039 75 0.332664394366574 3 NA NA -5.76459191225145 LTS-021 chr14 105686521 105687989 1469 * BRF1 NA 0 NA 1.682 1 NA NA NA NA NA LTS-021 chr14 105687990 105693309 5320 * BRF1 0.259 1 NA 1.26896954239854 17 0.797692960244435 5 5 0 -5.76441194467484 LTS-021 chr14 105693310 106054568 361259 * c(CRIP1, CRIP2, PACS2, C14orf80, BRF1, TEX22, TMEM121, BTBD6, MTA1) 0.290054812417403 19 0.217934978768348 1.13629529784787 866 0.743453479507929 5 4 1 -6.74025094438573 LTS-021 chr14 106054569 106054641 73 * character(0) NA 0 NA 0.647 1 NA NA NA NA NA LTS-021 chr14 106054642 106357014 302373 * c(ELK2AP, FAM30A) 0.252564510023607 10 0.187141182592775 0.784967658649226 281 0.470198702521144 3 3 0 -6.75994018418742 LTS-021 chr14 106357015 106357548 534 * FAM30A NA 0 NA 0.45 1 NA NA NA NA NA LTS-021 chr14 106357549 106388112 30564 * FAM30A 0 3 0 0.523516789754905 75 0.709370867055468 0 0 0 -Inf LTS-021 chr14 106388113 106452766 64654 * c(ADAM6, FAM30A) 0.468 1 NA 0.557238724953255 35 0.274010556135981 1 1 0 -5.7726628740544 LTS-021 chr14 106452767 106866565 413799 * LINC00226 0.42431559016918 9 0.042395295860639 0.449496873665344 179 0.482212859422819 0 0 0 -7.93235012507761 LTS-021 chr14 106866566 107282973 416408 * LINC00221 0.339558245993748 37 0.0639985454038903 0.813975431476692 195 0.633051475060803 1 1 0 -6.77457834986262 LTS-021 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.819503098096751 5 0.366797900757352 2 NA NA -5.76441159623568 LTS-021 chr15 20169987 20446043 276057 * character(0) 0.411 1 NA 0.740082275355718 23 0.387610731341875 2 2 0 -5.76832595100483 LTS-021 chr15 20446044 20875072 429029 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.231630696262352 10 0.141592529620896 1.09015434849272 85 1.35439624904966 4 4 0 -6.73382006764978 LTS-021 chr15 20875073 20876434 1362 * NBEAP1 NA 0 NA 0.523 1 NA NA NA NA NA LTS-021 chr15 20876435 22369595 1493161 * c(POTEB, LINC01193, OR4M2, NF1P2, NBEAP1, LOC646214, CXADRP2, LOC727924) 0.364293261090843 10 0.0478650881819585 0.44116886435908 110 0.326095221898125 0 0 0 -6.8003882297939 LTS-021 chr15 22369596 23060982 691387 * c(GOLGA8DP, TUBGCP5, NIPA1, CYFIP1, OR4N4, GOLGA6L1, OR4N3P, REREP3, LOC727924, NIPA2) 0.322189244936303 22 0.207831126293145 0.943757783917713 667 0.541451336437209 3 2 1 -6.74759571345893 LTS-021 chr15 23060983 23062210 1228 * NIPA1 NA 0 NA 0.561 1 NA NA NA NA NA LTS-021 chr15 23062211 25204023 2141813 * c(HERC2P7, MIR4508, NIPA1, NPAP1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, MAGEL2, GOLGA8S, SNRPN, MKRN3, PWRN1, PWRN2, SNURF) 0.243158239720041 13 0.208918306939241 0.743463559648135 495 0.520451440106584 2 2 0 -6.79166374475031 LTS-021 chr15 25204024 25207207 3184 * c(SNRPN, SNURF) NA 0 NA 0.473 1 NA NA NA NA NA LTS-021 chr15 25207208 25324348 117141 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD109B, PWARSN, IPW, SNRPN, PWAR5, SNURF) 0.449508771177903 4 0.0365330900235207 0.513217773381398 130 0.251564131315614 0 0 0 -9.17737450945386 LTS-021 chr15 25324349 25337147 12799 * c(SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD109B, IPW, SNORD116-19) 0 1 NA 0.519624832733292 49 0.228330336019853 0 0 0 -5.76537691586012 LTS-021 chr15 25337148 25496209 159062 * c(SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-24, NA NA NA NA NA NA NA NA NA LTS-021 SNORD115-27, SNORD115-28, PWAR1, SNORD109B, SNORD115-1, PWAR4, IPW) 0 3 0 0.480351671318612 170 0.341436831318352 0 0 0 -Inf LTS-021 NA NA NA NA LTS-021 chr15 25496210 25514841 18632 * c(SNORD115-45, SNORD115-47, SNORD109B) NA 0 NA 1.401 1 NA NA NA NA NA LTS-021 chr15 25514842 26790247 1275406 * c(SNORD115-48, LOC100128714, MIR4715, GABRB3, SNORD109B, LINC00929, ATP10A, UBE3A) 0.0734595789115369 15 0.192514860279853 0.956337396080379 389 0.550357467164565 4 4 0 -7.1341291674619 LTS-021 chr15 26790248 26791100 853 * GABRB3 NA 0 NA 1.16346016644984 18 0.732223163685709 4 NA NA -5.76441397574483 LTS-021 chr15 26791101 26866738 75638 * GABRB3 0.351 1 NA 0.653832946737521 79 0.223825645328353 1 1 0 -5.7654196657032 LTS-021 chr15 26866739 28090272 1223534 * c(GABRA5, GABRB3, GABRG3, OCA2) 0.218119673780876 10 0.23498217426482 0.635795925885153 261 0.495563353331086 1 1 0 -6.8987893519172 LTS-021 chr15 28090273 28096523 6251 * OCA2 NA 0 NA 1.203 1 NA NA NA NA NA LTS-021 chr15 28096524 28267758 171235 * OCA2 0.420371492520956 2 0.0388908729652601 0.922569910504939 94 0.318338570629161 2 1 1 -8.0195744508717 LTS-021 chr15 28267759 28375792 108034 * c(OCA2, HERC2) 0 1 NA 1.01029848811205 103 0.503173086859587 3 3 0 -5.76579199234807 LTS-021 chr15 28375793 30010795 1635003 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, NSMCE3, PDCD6IPP2, TJP1, GOLGA6L7P, HERC2) 0.0884083008041413 12 0.172327977467914 0.914693173584852 750 0.606047770939252 4 4 0 -7.17808195745653 LTS-021 chr15 30010796 30018627 7832 * TJP1 0.495 1 NA 0.955331856635161 31 0.173189274296022 3 3 0 -5.76445829245148 LTS-021 chr15 30018628 30337572 318945 * TJP1 0.494 1 NA 0.891647663680001 160 0.440041035107655 3 3 0 -5.76702548425452 LTS-021 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.256 1 NA NA NA NA NA LTS-021 chr15 30491510 30665383 173874 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.294235786346511 65 0.238241206755158 0 NA NA -6.17252473190277 LTS-021 chr15 30665384 30700100 34717 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.861 1 NA NA NA NA NA LTS-021 chr15 30700101 32393601 1693501 * c(LOC100288637, CHRNA7, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.203224812051998 17 0.22426459884279 0.941587981623095 790 0.548719699624934 3 3 0 -6.77027898509638 LTS-021 chr15 32393602 32403943 10342 * CHRNA7 NA 0 NA 0.436 1 NA NA NA NA NA LTS-021 chr15 32403944 32620311 216368 * CHRNA7 0.265 1 NA 0.478061905823988 89 0.398125810685278 0 0 0 -5.76441462856444 LTS-021 chr15 32620312 33064532 444221 * c(WHAMMP1, LOC100996255, GREM1, FMN1, SCG5, GOLGA8O, ARHGAP11A) 0.274281029670875 12 0.185514742532688 0.815161553827828 403 0.409582545915588 2 2 0 -6.74682861739087 LTS-021 chr15 33064533 33064556 24 * FMN1 0.492 1 NA 1.216 1 NA NA NA NA NA LTS-021 chr15 33064557 33446947 382391 * FMN1 0.408412886833976 12 0.134199619518044 0.870847848442397 314 0.342200462520904 2 1 1 -6.83881943014408 LTS-021 chr15 33446948 33842363 395416 * c(TMCO5B, FMN1, RYR3) 0 1 NA 0.894883921973652 61 0.488101880657757 3 3 0 -5.76668753758334 LTS-021 chr15 33842364 34131103 288740 * RYR3 0.162044242493445 23 0.22484791522324 0.798342501111456 493 0.690987869572282 4 4 0 -6.81729422225249 LTS-021 chr15 34131104 34135607 4504 * RYR3 0.4 1 NA 0.988171696222028 13 0.561726003104808 3 3 0 -5.76443269611992 LTS-021 chr15 34135608 34634324 498717 * c(CHRM5, PGBD4, EMC4, NOP10, EMC7, AVEN, RYR3, KATNBL1, SLC12A6) 0.388716212690294 19 0.143879416699219 0.894487138590054 565 0.433368658383268 3 2 1 -6.77035415425402 LTS-021 chr15 34634325 34647262 12938 * c(NUTM1, NOP10) 0 1 NA 0.815836396877866 63 0.456110384161206 2 2 0 -5.76446354504741 LTS-021 chr15 34647263 34678938 31676 * c(MIR1233-2, GOLGA8A, LPCAT4, NUTM1) 0 1 NA 0.867137182758839 162 0.678727925580953 3 3 0 -5.76466973791555 LTS-021 chr15 34678939 34781179 102241 * c(MIR1233-2, GOLGA8A) NA 0 NA 0.206 1 NA NA NA NA NA LTS-021 chr15 34781180 34819958 38779 * c(MIR1233-2, GOLGA8B) NA 0 NA 0.19469922469752 52 0.106525887491644 0 NA NA -7.08760877889839 LTS-021 chr15 34819959 36984277 2164319 * c(MIR1233-2, MIR3942, DPH6-AS1, MIR4510, GOLGA8B, ZNF770, GJD2, ACTC1, ANP32AP1, C15orf41, DPH6, AQR) 0.123003427836172 11 0.209039752635278 0.888047372846994 644 0.485929937465444 3 3 0 -6.99456809383725 LTS-021 chr15 36984278 36989469 5192 * C15orf41 0.48 1 NA 1.4035135162641 7 0.5018899993311 6 6 0 -5.76441030776207 LTS-021 chr15 36989470 40655873 3666404 * c(SRP14-AS1, ANKRD63, RASGRP1, GPR176, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, FSIP1, FAM98B, C15orf52, C15orf53, C15orf54, MEIS2, EIF2AK4, PLCB2, PAK6, C15orf56, PHGR1, SRP14, BUB1B, THBS1, C15orf41, DISP2, BMF) 0.343917161559183 46 0.188403653666737 0.903593170718207 2483 0.470843932705648 3 2 1 -6.74935000610758 LTS-021 chr15 40655874 40662699 6826 * DISP2 0 1 NA 0.802907509674326 109 0.248800679495791 2 2 0 -5.76444174806082 LTS-021 chr15 40662700 40911274 248575 * c(CHST14, BAHD1, RPUSD2, MRPL42P5, IVD, KNL1, DISP2, C15orf57, KNSTRN) 0.196722335435786 13 0.233831190479426 0.98633724827491 570 0.639000493966256 4 4 0 -6.74651382320868 LTS-021 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.531 1 NA NA NA NA NA LTS-021 chr15 40912850 40916457 3608 * KNL1 0 2 0 0.433283570998765 80 0.478279487699849 0 0 0 -Inf LTS-021 chr15 40916458 41195689 279232 * c(RAD51-AS1, RHOV, GCHFR, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, ZFYVE19) 0.172925976440765 11 0.230962806923145 1.04594903979644 805 0.578535038642104 5 5 0 -6.75683566721796 LTS-021 chr15 41195690 41230672 34983 * c(DLL4, VPS18) 0 1 NA 0.923539805528995 87 0.523138156073022 3 3 0 -5.76443053961107 LTS-021 chr15 41230673 41803569 572897 * c(CHP1, OIP5, EXD1, RTF1, ITPKA, LTK, NDUFAF1, NUSAP1, DLL4, INO80, OIP5-AS1, CHAC1) 0.0390458683747115 14 0.124976833017999 0.973747740392733 894 0.557873129582122 8 8 0 -7.49575879638893 LTS-021 chr15 41803570 41817367 13798 * c(RPAP1, LTK) 0.49 1 NA 0.931059519512642 117 0.339030049692876 3 3 0 -5.76441497963414 LTS-021 chr15 41817368 42149596 332229 * c(JMJD7, PLA2G4B, MAPKBP1, MGA, RPAP1, SPTBN5, MIR626, TYRO3, JMJD7-PLA2G4B) 0.28958298121419 40 0.214385751954335 0.96180441523277 966 0.516010311881303 3 3 0 -6.74545582727763 LTS-021 chr15 42149597 42149690 94 * SPTBN5 0 1 NA 1.39516651184559 3 2.61730070874556 6 6 0 -5.76441013469173 LTS-021 chr15 42149691 42211431 61741 * c(MIR4310, EHD4, SPTBN5) 0.111411402272691 11 0.212241414860103 0.992373758767135 355 0.62325622166837 9 9 0 -6.77956563463299 LTS-021 chr15 42211432 42211486 55 * EHD4 0.441 1 NA 1.765 1 NA NA NA NA NA LTS-021 chr15 42211487 42861567 650081 * c(PLA2G4E, VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, PLA2G4D, EHD4, HAUS2, ZNF106, MIR627, CAPN3, SNAP23) 0.343128616887475 50 0.183841241403599 0.982610961322044 1443 0.529873281205828 3 2 1 -6.73824943663661 LTS-021 chr15 42861568 42875683 14116 * c(HAUS2, STARD9) 0 1 NA 1.2661962833974 24 0.338573154277036 5 5 0 -5.76443100948827 LTS-021 chr15 42875684 42976559 100876 * STARD9 0 5 0 1.01969851707584 123 0.639796200099898 0 0 0 -Inf LTS-021 chr15 42976560 43009327 32768 * STARD9 0 6 0 0.604055365802867 243 0.492424053699351 0 0 0 -Inf LTS-021 chr15 43009328 43009817 490 * STARD9 NA 0 NA 2.745 1 NA NA NA NA NA LTS-021 chr15 43009818 43816354 806537 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, LCMT2) 0.0222756706079847 16 0.11975 0.937423316311651 1638 0.493570747403488 6 6 0 -7.9288491943397 LTS-021 chr15 43816355 44002669 186315 * c(CKMT1B, CATSPER2, STRC, MAP1A, CKMT1A, PPIP5K1) 0.221219312164527 6 0.228625822396917 0.653247279996505 575 0.464206746360021 3 3 0 -6.81702129305919 LTS-021 chr15 44002670 44002792 123 * character(0) NA 0 NA 0.025 1 NA NA NA NA NA LTS-021 chr15 44002793 44029073 26281 * CATSPER2P1 NA 0 NA 0.383727557851689 69 0.272585548957435 0 NA NA -5.77486469914688 LTS-021 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 0.956 1 NA NA NA NA NA LTS-021 chr15 44029088 44958558 929471 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.0249304180502902 12 0.0952627944162883 0.956209859775179 1312 0.483987844970683 7 7 0 -8.30036845205208 LTS-021 chr15 44958559 45028710 70152 * c(TRIM69, PATL2, B2M) 0.462 1 NA 0.952610071001201 103 0.439890541565648 3 3 0 -5.76445701330137 LTS-021 chr15 45028711 45050529 21819 * TRIM69 0.331002805870901 4 0.230553500660187 0.942044264783624 62 0.353749094696993 4 3 1 -6.73546368180756 LTS-021 chr15 45050530 45365792 315263 * c(TRIM69, TERB2, SORD) 0.252933301473759 10 0.162495435833339 0.774133615624276 194 0.848757261814236 3 3 0 -6.74367990431129 LTS-021 chr15 45365793 45365905 113 * SORD 0.23 1 NA 0.518479924163335 5 0.344084001371758 0 0 0 -5.76441366078102 LTS-021 chr15 45365906 45388097 22192 * c(DUOX2, SORD) 0.18183111024196 3 0.155429512427123 0.566561908797463 86 0.521158741187109 5 5 0 -6.77206197544882 LTS-021 chr15 45388098 45440140 52043 * c(DUOXA2, DUOX2, DUOX1, DUOXA1) 0.0545844119612513 6 0.165748805928328 0.908916406561662 340 0.545911797656685 13 13 0 -6.8921953163576 LTS-021 chr15 45440141 45443012 2872 * DUOX1 0.492 1 NA 0.778398381010919 13 0.27377440179265 2 2 0 -5.76441205481993 LTS-021 chr15 45443013 45654327 211315 * c(GATM, DUOX1, SHF, SLC28A2) 0.423489561003995 16 0.120386322589681 0.972526776817718 296 0.463720924809605 4 2 2 -6.91584025286047 LTS-021 chr15 45654328 45656158 1831 * GATM 0 1 NA 0.802091291354831 11 1.3384350631173 2 2 0 -5.76441040093715 LTS-021 chr15 45656159 45983585 327427 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, SQRDL, SLC30A4, SPATA5L1, C15orf48) 0.199876091517671 12 0.237949367545181 1.02922598075897 515 0.762600578661525 4 4 0 -6.74170814083249 LTS-021 chr15 47873448 48064996 191549 * SEMA6D 0.291141490454591 7 0.213971960779912 0.650900049164711 161 0.490864902556815 2 2 0 -6.75090313738615 LTS-021 chr15 48064997 48066138 1142 * SEMA6D 0 1 NA 0.76089099244276 25 0.395674845464471 2 2 0 -5.76441458134832 LTS-021 chr15 48066139 48635465 569327 * c(DUT, SLC24A5, CTXN2, MYEF2, SLC12A1, SEMA6D) 0 11 0 0.76913999005002 715 0.3983785640373 0 0 0 -Inf LTS-021 chr15 48635466 48701029 65564 * c(DUT, FBN1) 0.405 1 NA 0.842006045073819 15 0.191443837344384 2 2 0 -5.76957638299578 LTS-021 chr15 48701030 49868418 1167389 * c(NDUFAF4P1, MIR4716, FAM227B, FBN1, FGF7, CEP152, EID1, GALK2, SHC4, COPS2, SECISBP2L) 0.187683246039636 23 0.213980023817377 0.809215006417233 1396 0.442402470484709 3 3 0 -6.87727090895163 LTS-021 chr15 49868419 49917341 48923 * c(FAM227B, DTWD1) 0.387 1 NA 0.920377660557916 45 0.380913711430234 3 3 0 -5.76448897297866 LTS-021 chr15 49917342 50526249 608908 * c(SLC27A2, DTWD1, ATP8B4) 0.403751082151525 16 0.158792409033514 0.736517585865283 359 0.373749079873484 2 1 1 -6.79428292231377 LTS-021 chr15 50526250 50528215 1966 * SLC27A2 0 1 NA 0.956839226766461 7 0.664180626608383 3 3 0 -5.76441111070447 LTS-021 chr15 50528216 50544856 16641 * c(SLC27A2, HDC) 0 1 NA 0.783802922834392 47 0.593778452066729 2 2 0 -5.76441027438079 LTS-021 chr15 50544857 52201415 1656559 * c(GABPB1-AS1, DCAF13P3, MIR4713, MIR4712, CYP19A1, DMXL2, AP4E1, GABPB1, LYSMD2, SCG3, TMOD3, TMOD2, HDC, GLDN, USP50, TNFAIP8L3, TRPM7, FLJ10038, SPPL2A, USP8) 0.217334130288927 50 0.220071276950845 0.892024068439151 1894 0.50559681986146 3 3 0 -6.76482972559677 LTS-021 chr15 52201416 52203813 2398 * TMOD3 0.463 1 NA 1.46129563497398 47 0.74845297308112 6 6 0 -5.76441512463978 LTS-021 chr15 52203814 52534344 330531 * c(LOC100129973, BCL2L10, GNB5, LEO1, TMOD3, MYO5C, MAPK6) 0.437821358202452 12 0.0358543983185868 0.933158644520093 430 0.619083294533582 4 2 2 -8.82965161523667 LTS-021 chr15 52534345 52538208 3864 * MYO5C 0 1 NA 1.6209637970608 15 0.768177385268595 7 7 0 -5.76441767987538 LTS-021 chr15 52538209 52901638 363430 * c(MIR1266, ARPP19, MYO5A, MYO5C, FAM214A) 0.235944688173124 15 0.21722529450188 0.953287102895732 526 0.51955238200417 3 3 0 -6.74012139753457 LTS-021 chr15 52901639 52901664 26 * FAM214A NA 0 NA 0.843 1 NA NA NA NA NA LTS-021 chr15 52901665 55731572 2829908 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, WDR72, ONECUT1, UNC13C, RSL24D1, FAM214A, RAB27A, MIR628, CCPG1, PIGB) 0.182218355587112 21 0.213540227056704 0.787901899862086 893 0.441222086553014 2 2 0 -6.91067755410196 LTS-021 chr15 55731573 55831868 100296 * c(DYX1C1-CCPG1, DYX1C1) 0 1 NA 0.973060321294078 61 0.397424408731695 3 3 0 -5.76490169974763 LTS-021 chr15 55831869 55976086 144218 * c(PYGO1, PRTG) 0 12 0 0.83748845017507 479 0.475560671594742 0 0 0 -Inf LTS-021 chr15 55976087 56121060 144974 * c(PRTG, NEDD4) 0.409 1 NA 0.855206896939877 67 0.490281893549486 2 2 0 -5.76702128756594 LTS-021 chr15 56121061 57841502 1720442 * c(LOC145783, LINC00926, TEX9, NEDD4, ZNF280D, MNS1, RFX7, TCF12, CGNL1) 0.22067958605902 23 0.232225382890196 0.85539636176658 1136 0.49990860386909 3 3 0 -6.78502283098718 LTS-021 chr15 57841503 57884219 42717 * c(MYZAP, GCOM1, CGNL1) 0.352 1 NA 1.01639198560091 33 0.436304270740806 4 4 0 -5.76510159541731 LTS-021 chr15 57884220 58571479 687260 * c(MYZAP, GCOM1, AQP9, POLR2M, ALDH1A2) 0.389821538888947 17 0.0735669463022307 0.757752465372611 460 0.382691567139053 2 1 1 -6.85011116155445 LTS-021 chr15 58571480 58723513 152034 * LIPC NA 0 NA 1.659 1 NA NA NA NA NA LTS-021 chr15 58723514 58857378 133865 * LIPC 0.463276039200407 3 0.0244199372098565 1.16107148613849 75 0.527270882055005 4 2 2 -11.4087617665935 LTS-021 chr15 58857379 58984879 127501 * c(ADAM10, LIPC, HSP90AB4P) 0 1 NA 0.887628006219673 191 0.537083974585359 3 3 0 -5.76524087402696 LTS-021 chr15 58984880 62978784 3993905 * c(MIR2116, ADAM10, C2CD4A, FAM81A, MGC15885, FOXB1, GTF2A2, ANXA2, C2CD4B, MYO1E, FAM63B, RNF111, VPS13C, RORA, BNIP2, HSP90AB4P, ICE2, SLTM, TLN2, CCNB2, GCNT3, LDHAL6B) 0.108718568135342 49 0.185425987306816 0.962064416257937 2547 0.520602363873093 4 4 0 -7.10428122535636 LTS-021 chr15 62978785 63340416 361632 * c(MIR190A, TPM1, TLN2) 0.421 1 NA 1.09283572576274 391 0.450666142095151 4 4 0 -5.7644109037531 LTS-021 chr15 63340417 63547859 207443 * c(LACTB, RPS27L, RAB8B, TPM1) 0.431842221076032 12 0.0423780782380645 0.904888307597274 270 0.489404098902512 2 1 1 -8.18139401451113 LTS-021 chr15 63547860 63557776 9917 * RAB8B 0 1 NA 0.768346940156418 59 0.431003499248787 2 2 0 -5.76442583052373 LTS-021 chr15 63557777 64039177 481401 * c(USP3-AS1, FBXL22, RAB8B, CA12, APH1B, HERC1, USP3) 0.215952614198257 24 0.214985742702202 0.932768400934702 885 0.429324741159509 3 3 0 -6.75733528593784 LTS-021 chr15 64039178 64039879 702 * HERC1 0.444 1 NA 1.34963650736929 7 0.591770426850851 6 6 0 -5.76441163991284 LTS-021 chr15 64039880 65689267 1649388 * c(MIR1272, PDCD7, CLPX, MTFMT, SLC51B, ZNF609, DAPK2, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, OAZ2, RASL12, SPG21, CSNK1G1, PPIB, PARP16, IGDCC4, SNX1, SNX22, PIF1, PLEKHO2, FAM96A, CILP, HERC1, TRIP4, IGDCC3, KIAA0101) 0.33475192074818 72 0.180804115897588 0.978955031041418 2340 0.599234136037668 3 2 1 -6.74507512919561 LTS-021 chr15 65689268 65693232 3965 * IGDCC4 0 1 NA 1.22945909099637 6 1.3497299976909 5 5 0 -5.76441034303222 LTS-021 chr15 65693233 66857840 1164608 * c(MIR4311, MIR4511, DENND4A, SNAPC5, DIS3L, LCTL, HACD3, DPP8, TIPIN, ZWILCH, MAP2K1, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, SCARNA14, VWA9, MEGF11, RAB11A, SLC24A1) 0.122773946461669 22 0.206802753337277 0.960244954923299 1591 0.538704135989812 4 4 0 -6.91977256988596 LTS-021 chr15 66857841 66995075 137235 * c(LCTL, SMAD6) 0.423 1 NA 0.971918456797034 33 0.705778343444851 3 3 0 -5.76460970251098 LTS-021 chr15 66995076 67547301 552226 * c(SMAD3, SMAD6, IQCH, AAGAB) 0.459628217398623 20 0.0319691874680671 0.934239232086147 427 0.479521639763646 4 2 2 -10.1033204355879 LTS-021 chr15 67547302 67596771 49470 * c(IQCH, AAGAB) 0.333 1 NA 0.755857323912375 35 0.355231116624779 2 2 0 -5.76475923662306 LTS-021 chr15 67596772 68484089 887318 * c(IQCH-AS1, C15orf61, SKOR1, MAP2K5, IQCH, PIAS1, CALML4) 0.227837034520017 10 0.237376517606757 0.820307533373355 582 0.403259898877618 2 2 0 -6.79429799313313 LTS-021 chr15 68484090 68486097 2008 * CALML4 0.491 1 NA 0.836368105979112 47 0.408325475328242 2 2 0 -5.76443851896677 LTS-021 chr15 68486098 69328226 842129 * c(MIR548H4, MIR4312, FEM1B, CORO2B, ITGA11, SPESP1, CLN6, NOX5, ANP32A-IT1, ANP32A, CALML4) 0.388737924536067 21 0.134866088787219 1.04134328338286 681 0.563885943806789 4 2 2 -6.76855697263089 LTS-021 chr15 69328227 69340262 12036 * c(MIR548H4, NOX5) 0 1 NA 1.14305488966053 33 0.520696610539451 4 4 0 -5.76446594542634 LTS-021 chr15 69340263 72837195 3496933 * c(NR2E3, MIR548H4, SENP8, DRAIC, CT62, GRAMD2, ARIH1, GLCE, EWSAT1, HEXA, TMEM202, LINC00593, MYO9A, PKM, LRRC49, PAQR5, UACA, LARP6, THAP10, PARP6, CELF6, RPLP1, MIR629, TLE3, NOX5, THSD4, HEXA-AS1, KIF23) 0.046351943572711 33 0.155969445094321 0.977436355441715 2567 0.477870796031877 4 4 0 -7.55312429866707 LTS-021 chr15 72837196 72978531 141336 * c(HIGD2B, ARIH1, GOLGA6B, BBS4, MIR630) 0.482 1 NA 1.10078177809393 141 0.471463076950958 4 4 0 -5.76443512343453 LTS-021 chr15 72978532 74623302 1644771 * c(HCN4, ADPGK-AS1, LOXL1-AS1, TBC1D21, NPTN, REC114, LOC283731, GOLGA6A, ISLR, C15orf59, LOXL1, NEO1, PML, ISLR2, BBS4, STRA6, CCDC33, CD276, ADPGK, STOML1) 0.372757567456509 37 0.173174745538986 0.967269421573095 1517 0.482937240994401 3 2 1 -6.74343730954869 LTS-021 chr15 74623303 74636335 13033 * c(CYP11A1, CCDC33) 0 1 NA 0.93290275231102 85 0.573707603231474 3 3 0 -5.76441105498534 LTS-021 chr15 74636336 75760803 1124468 * c(MIR4513, SCAMP2, ARID3B, CLK3, CSK, CYP1A1, CYP1A2, CYP11A1, SCAMP5, SIN3A, ULK3, MAN2C1, MPI, UBL7-AS1, RPP25, COMMD4, C15orf39, FAM219B, PTPN9, CPLX3, PPCDC, GOLGA6C, GOLGA6D, MIR631, LOC729739, NEIL1, LMAN1L, EDC3, SEMA7A, UBL7, COX5A) 0.160262553462385 38 0.223113557000044 0.986933248510808 1869 0.657760907821693 4 4 0 -6.80133002281664 LTS-021 chr15 75760804 75871521 110718 * PTPN9 0.459 1 NA 0.985855178599266 85 0.406684522154734 3 3 0 -5.765373730041 LTS-021 chr15 75871522 75970070 98549 * c(SNUPN, CSPG4, SNX33, IMP3, PTPN9) 0.384307707025239 11 0.132240277181693 0.904423860545751 337 0.421305755605226 3 2 1 -6.76368950698467 LTS-021 chr15 75970071 75979705 9635 * CSPG4 0 1 NA 1.679146601652 41 0.897863453141849 8 8 0 -5.76441176201513 LTS-021 chr15 75979706 76494539 514834 * c(DNM1P35, MIR4313, TMEM266, NRG4, CSPG4, ODF3L1, FBXO22, FBXO22-AS1, UBE2Q2) 0.188693646400743 18 0.18657392654216 0.997173888632554 460 0.619835055625791 4 4 0 -6.76417138976172 LTS-021 chr15 76494540 76496232 1693 * TMEM266 0.416 1 NA 0.649752395483159 9 0.363505081731252 1 1 0 -5.76441578769861 LTS-021 chr15 76496233 78287465 1791233 * c(TSPAN3, HMG20A, TMEM266, ETFA, TBC1D2B, LINGO1-AS1, SCAPER, RCN2, LOC645752, ISL2, TYRO3P, PEAK1, LINC00597, LINGO1, PSTPIP1, LOC91450) 0.350046593093891 27 0.183466043653285 0.936575980984936 1138 0.552832142380972 3 2 1 -6.73341223056952 LTS-021 chr15 78287466 78290518 3053 * TBC1D2B 0.217184219079537 2 0.329511760032931 0.512060610527814 72 0.419966592446968 4 4 0 -6.73945610007041 LTS-021 chr15 78290519 79310288 1019770 * c(MIR5003, CIB2, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, CTSH, TBC1D2B, ACSBG1, IDH3A, IREB2, DNAJA4, PSMA4, RASGRF1, SH2D7, LOC646938, WDR61) 0.331529500117685 30 0.180631790330941 0.889473339825613 1647 0.512568375155429 3 2 1 -6.74952951291341 LTS-021 chr15 79310289 79341879 31591 * RASGRF1 0 1 NA 0.972044655598958 37 0.5485259348483 3 3 0 -5.76448675944071 LTS-021 chr15 79341880 81243520 1901641 * c(ST20-MTHFS, MTHFS, FAH, MESDC2, KIAA1024, TMED3, ST20-AS1, LINC00927, ANKRD34C, ST20, MIR184, ZFAND6, CEMIP, ABHD17C, RASGRF1, BCL2A1, MIR549A, ANKRD34C-AS1, ARNT2) 0.143726606054614 25 0.209666703762583 0.816679254699683 1082 0.554002937356176 3 3 0 -6.98113729562207 LTS-021 chr15 81243521 81270141 26621 * c(MESDC2, CEMIP) 0.424 1 NA 1.12867089481895 59 0.31630032743609 4 4 0 -5.76458518082953 LTS-021 chr15 81270142 81604871 334730 * c(MIR4514, CFAP161, MESDC2, IL16, MESDC1) 0.408090016214994 9 0.156385829849695 0.935186292639165 457 0.438868970176302 3 2 1 -6.80251863981762 LTS-021 chr15 81604872 81636348 31477 * c(TMC3, IL16, STARD5) 0 1 NA 1.0414063305402 135 0.557481971340119 4 4 0 -5.76454640395896 LTS-021 chr15 81636349 83935711 2299363 * c(NA, UBE2Q2P2, NA, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, ADAMTS7P1, GOLGA6L9, HDGFRP3, BTBD1, TM6SF1, CPEB1, BNC1, GOLGA6L10, SCARNA15, EFL1, AP3B2, FAM103A1, MEX3B, HOMER2) 0.0476300812062291 17 0.15718876812142 0.875322756600466 1287 0.581168921657881 4 4 0 -7.61717499172392 LTS-021 chr15 83935712 84324441 388730 * c(ADAMTSL3, SH3GL3, BNC1) 0.461 1 NA 0.83415121027469 91 0.417015162978334 2 2 0 -5.76924032757208 LTS-021 chr15 84324442 85346747 1022306 * c(UBE2Q2L, LINC00933, SEC11A, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, SCAND2P, ZSCAN2, ADAMTSL3, LOC642423, GOLGA6L4, EFTUD1P1, WDR73, ZNF592) 0.269075064447658 16 0.231641452464795 0.885671132072 680 0.443588481565083 3 3 0 -6.74464108395841 LTS-021 chr15 85346748 86313048 966301 * c(AKAP13, PDE8A, ALPK3, LOC642423, KLHL25, SLC28A1, ZNF592) 0.254980664336788 29 0.225649713280226 1.01482344165146 1046 0.57485023781909 3 3 0 -6.74388523640295 LTS-021 chr15 86313049 86685135 372087 * c(MIR1276, KLHL25) 0 1 NA 1.24044917488449 9 0.385688597763072 5 5 0 -5.76443106578494 LTS-021 chr15 86685136 86685215 80 * character(0) NA 0 NA 0.838974681259543 2 0.0643467170879757 2 NA NA -5.7644597018607 LTS-021 chr15 86685216 89401653 2716438 * c(MIR1179, MIR3529, AGBL1, LINC00052, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, AEN, MRPS11, AGBL1-AS1) 0.0582969747890954 28 0.144967077999468 0.774430190741019 1039 0.458767929531538 3 3 0 -7.98243813123775 LTS-021 chr15 89401654 89414630 12977 * ACAN NA 0 NA 0.6686552868081 34 0.224047065019894 1 NA NA -5.76489307010216 LTS-021 chr15 89414631 89415247 617 * ACAN 0.433 1 NA 1.13076193944931 5 0.451462844539836 4 4 0 -5.7644123515023 LTS-021 chr15 89415248 90174824 759577 * c(ABHD2, HAPLN3, ACAN, MIR9-3HG, LINC00928, KIF7, MIR9-3, MFGE8, RHCG, POLG, FANCI, RLBP1, TICRR) 0.324802225535882 42 0.186438533960693 0.928827572175599 1013 0.530887151764011 3 2 1 -6.74846389993943 LTS-021 chr15 90174825 90190360 15536 * KIF7 0 1 NA 1.13218893307727 45 0.500221787174086 4 4 0 -5.76445901801807 LTS-021 chr15 90190361 90344386 154026 * c(MESP2, ANPEP, KIF7, PLIN1, MESP1, WDR93, PEX11A) 0.154979669109378 15 0.216412568951066 0.999007450398228 469 0.752789723643014 6 6 0 -6.75944360584806 LTS-021 chr15 90344387 90346861 2475 * ANPEP 0.48 1 NA 1.00949636066113 19 0.394179368142228 3 3 0 -5.76446060188786 LTS-021 chr15 90346862 91509420 1162559 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, FES, GABARAPL3, ANPEP, IDH2, ZNF774, ARPIN, ZNF710, HDDC3, GDPGP1, MAN2A2, TTLL13P, FURIN, NGRN, UNC45A, BLM, CRTC3, IQGAP1, PRC1, RCCD1) 0.302188373468071 40 0.200435295525283 1.00682806557073 2050 0.508365246737066 4 3 1 -6.76649110358706 LTS-021 chr15 91509421 91565804 56384 * c(PRC1-AS1, VPS33B, PRC1) 0.459182053064655 4 0.0251992063367083 0.855626676980462 254 0.346590584171918 2 1 1 -11.0790422887162 LTS-021 chr15 91565805 91769634 203830 * c(VPS33B, SV2B) 0 1 NA 1.03417735032507 13 0.454330360996353 4 4 0 -5.76615790779396 LTS-021 chr15 91769635 92396914 627280 * SV2B 0.0451518872443385 9 0.16 0.711607379084245 254 0.471430822695753 4 4 0 -7.71440682458988 LTS-021 chr15 92396915 92397670 756 * SLCO3A1 0.454 1 NA 0.934318190694516 12 0.442432626269671 3 3 0 -5.76441018594862 LTS-021 chr15 92397671 94885059 2487389 * c(LINC00930, MIR3175, LINC01578, CHD2, C15orf32, SLCO3A1, FAM174B, MCTP2, RGMA, ASB9P1, ST8SIA2) 0.356803358983956 30 0.185578700348366 0.940891421901732 989 0.5805824357618 3 2 1 -6.73314044096336 LTS-021 chr15 94885060 94885309 250 * MCTP2 0 1 NA 0.936687142982981 7 0.426388655705432 3 3 0 -5.76441013854175 LTS-021 chr15 94885310 97327004 2441695 * c(MIR1469, SPATA8-AS1, LINC00924, SPATA8, LINC01197, LOC440311, MCTP2, NR2F2-AS1, NR2F2) 0.165169483286168 9 0.20315231012989 0.955198289731793 303 0.486035360918353 3 3 0 -6.86091005146482 LTS-021 chr15 97327005 97940925 613921 * SPATA8 0.485 1 NA 0.611610885363502 25 0.31238831070747 1 1 0 -5.76861037031953 LTS-021 chr15 97940926 99677707 1736782 * c(MIR4714, PGPEP1L, SYNM, FAM169B, IGF1R, TTC23, ARRDC4, LINC00923) 0.394618534275739 40 0.127049394795681 0.916542322394102 818 0.503851581001636 3 2 1 -6.79442336218024 LTS-021 chr15 99677708 99677893 186 * TTC23 0 1 NA 0.839424557380392 5 1.05919025675277 2 2 0 -5.76441057005818 LTS-021 chr15 99677894 101120778 1442885 * c(LRRC28, LYSMD4, ADAMTS17, DNM1P46, CERS3, SPATA41, MEF2A, PRKXP1, LINS1, TTC23, HSP90B2P) 0.204952191084123 20 0.211423521073597 0.966775704881942 969 1.01253609685887 4 4 0 -6.75173534619433 LTS-021 chr15 101120779 101440988 320210 * c(ASB7, ALDH1A3, LINS1) 0.407 1 NA 0.904501953702374 209 0.327579377656482 3 3 0 -5.76687885942054 LTS-021 chr15 101440989 102312835 871847 * c(LOC100507472, TARSL2, ALDH1A3, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.385727767213933 32 0.140069535582821 0.919457666086896 978 0.531894441160791 3 2 1 -6.76337653877561 LTS-021 chr15 102312836 102516544 203709 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) NA 0 NA 0.615758607762684 81 0.447816674971708 1 NA NA -5.76484170148347 LTS-021 chr16 81704 81779 76 * character(0) 0.317 1 NA 1.34 1 NA NA NA NA NA LTS-021 chr16 81780 332095 250316 * c(HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, POLR3K, LUC7L, RHBDF1, PDIA2, SNRNP25, NPRL3, FAM234A, RGS11) 0.110076180869805 15 0.192019145870802 0.893140882437324 711 0.599570869164613 6 6 0 -6.89443454379989 LTS-021 chr16 332096 334580 2485 * c(ARHGDIG, LUC7L, PDIA2) 0.428 1 NA 0.916635348034805 27 0.267246501020485 3 3 0 -5.76442197035353 LTS-021 chr16 334581 848698 514118 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, DECR2, NHLRC4, JMJD8, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, NARFL, LINC00235, PDIA2, FAM173A, CAPN15, MIR662, METRN, AXIN1, WDR24, HAGHL, METTL26, MCRIP2, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.345229334240118 92 0.175928445581276 0.934644741837941 2400 0.508001498519702 3 2 1 -6.73474170682292 LTS-021 chr16 848699 1358858 510160 * c(SSTR5-AS1, TPSD1, TPSG1, SOX8, PRR25, C1QTNF8, GNG13, TPSB2, LMF1, SSTR5, TPSAB1, CACNA1H) 0.325320733065806 56 0.177475623897825 0.74067585170808 756 0.553857966167311 2 2 0 -6.74854593774179 LTS-021 chr16 1358859 1375098 16240 * UBE2I 0 1 NA 0.783321557606061 61 0.694450704423516 2 2 0 -5.76441029710914 LTS-021 chr16 1375099 1376446 1348 * UBE2I 0 1 NA 0.684707471271205 31 0.526343863235425 1 1 0 -5.76442858454315 LTS-021 chr16 1376447 1448926 72480 * c(TSR3, UNKL, UBE2I, GNPTG, BAIAP3) 0.0456425842999281 9 0.162666666666667 0.897853586020675 415 0.565474416915995 13 13 0 -6.94950971882715 LTS-021 chr16 1448927 1479250 30324 * c(C16orf91, UNKL) 0.464 1 NA 0.982444729097416 69 0.384052113653479 3 3 0 -5.76466570408863 LTS-021 chr16 1479251 2287026 807776 * c(MIR1225, MIR3177, MIR3180-5, MIR4516, NUBP2, TBL3, CLCN7, NOXO1, RNF151, DNASE1L2, E4F1, EME2, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, MSRB1, PKD1, SNORA10, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, LINC00254, MRPS34, SNORA78, TSC2, SNHG9, TMEM204, FAHD1, TRAF7, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, NA NA NA NA NA NA NA NA NA LTS-021 TELO2) 0.339257763783178 105 0.184455059199982 0.955336892574873 3149 0.557707843121314 3 2 1 -6.7376385089723 LTS-021 NA NA NA NA LTS-021 chr16 2287027 2296976 9950 * c(ECI1, DNASE1L2) 0 1 NA 0.771975394627949 61 0.498013241314516 2 2 0 -5.76441744364965 LTS-021 chr16 2296977 2649029 352053 * c(MIR940, MIR3178, MIR3677, MIR4717, RNPS1, ECI1, ABCA3, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, ABCA17P, CEMP1, C16orf59, CCNF) 0.072952514811721 10 0.173921565974755 1.01171547124839 766 0.565455207166879 7 7 0 -7.00905985844336 LTS-021 chr16 2649030 2650146 1117 * PDPK1 0.311 1 NA 0.775235797983752 21 0.289482699540635 2 2 0 -5.76441152937746 LTS-021 chr16 2650147 2650467 321 * PDPK1 NA 0 NA 0.642370854244827 9 0.20120042522597 1 NA NA -5.76441130370246 LTS-021 chr16 2650468 2650507 40 * PDPK1 NA 0 NA 0.305 1 NA NA NA NA NA LTS-021 chr16 2650508 2732840 82333 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.451197877895561 2 0.0700035713374682 0.391221948107366 147 0.308791553874604 0 0 0 -7.66449010679303 LTS-021 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 1.229 1 NA NA NA NA NA LTS-021 chr16 2747831 3367229 619399 * c(LOC100128770, SRRM2-AS1, ZNF263, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, ZNF75A, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, ZNF205-AS1, PRSS27, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.272607539197125 31 0.216864181270858 0.984599112436667 1791 0.600467680728509 3 3 0 -6.73764918191945 LTS-021 chr16 3367230 3367417 188 * ZNF75A 0 1 NA 0.910415507209175 5 0.712615464328413 3 3 0 -5.76441034185996 LTS-021 chr16 3367418 3795321 427904 * c(MTRNR2L4, TRAP1, CREBBP, ZNF597, DNASE1, NLRC3, CLUAP1, OR2C1, ZSCAN32, C16orf90, ZNF75A, ZNF174, NAA60, SLX4) 0.0722395204540458 15 0.171502131043264 0.939853575472284 995 0.556547830264817 6 6 0 -7.08922673907856 LTS-021 chr16 3795322 3811556 16235 * CREBBP 0.39 1 NA 1.12576540319876 37 0.539926835773133 4 4 0 -5.76444128920056 LTS-021 chr16 3811557 4802386 990830 * c(LINC01569, CORO7-PAM16, VASN, ADCY9, ANKS3, UBALD1, CREBBP, C16orf71, MGRN1, ZNF500, CDIP1, HMOX2, C16orf96, PAM16, NMRAL1, SRL, TFAP4, CORO7, NUDT16L1, GLIS2, DNAJA3) 0.354574414782372 44 0.180385403409515 1.07728976499693 1334 0.534236138362193 4 2 2 -6.73356921034789 LTS-021 chr16 4802387 4827615 25229 * c(SEPT12, ZNF500) 0 1 NA 1.10985843849405 43 0.367983368768104 4 4 0 -5.76443985265539 LTS-021 chr16 4827616 4931613 103998 * c(SEPT12, UBN1, SMIM22, ROGDI, GLYR1) 0.20909419829298 20 0.22414926300406 1.00983830761137 435 0.566518083513702 4 4 0 -6.73782923363945 LTS-021 chr16 4931614 4932929 1316 * c(UBN1, PPL) 0.484 1 NA 1.04352119509272 33 0.376878871405815 4 4 0 -5.76442154713592 LTS-021 chr16 4932930 9851188 4918259 * c(MIR548X, NAGPA-AS1, C16orf89, ABAT, EEF2KMT, CARHSP1, TMEM186, TMEM114, GRIN2A, C16orf72, NAGPA, PMM2, RBFOX1, PPL, ALG1, USP7, METTL22, SEC14L5) 0.360839702920247 49 0.16438589595557 0.996211147252317 1455 0.509650976750217 3 2 1 -6.77376931882697 LTS-021 chr16 9851189 9852391 1203 * GRIN2A 0 1 NA 1.02647455611064 25 0.425243330341582 4 4 0 -5.764425365286 LTS-021 chr16 9852392 11439478 1587087 * c(RMI2, TEKT5, EMP2, CLEC16A, DEXI, GRIN2A, CIITA, NUBP1, PRM1, PRM2, PRM3, TNP2, TVP23A, ATF7IP2, SOCS1) 0.175646067937287 24 0.218592098289903 1.0240374995344 1085 0.624757710986731 4 4 0 -6.77535009641116 LTS-021 chr16 11439479 11541896 102418 * RMI2 0.439 1 NA 1.22840305111789 48 0.578691912284915 5 5 0 -5.76444354255107 LTS-021 chr16 11541897 16306173 4764277 * c(MIR365A, NPIPA5, MIR3180-4, MIR4718, NTAN1, FOPNL, ERCC4, PDXDC1, NOMO1, MPV17L, RSL1D1, ZC3H7A, GSPT1, ABCC6, BCAR4, ABCC1, MYH11, PARN, TXNDC11, BFAR, RRN3, NDE1, CPPED1, MIR193B, MKL2, TNFRSF17, MIR484, NPIPA3, SHISA9, ABCC6P2, SNN, PLA2G10, C16orf45, SNX29, NPIPA1, LITAF, KIAA0430) 0.330513906297822 69 0.182055818286225 1.07474047430833 2855 0.619834886867509 4 3 1 -6.73521615756355 LTS-021 chr16 16306174 16308154 1981 * ABCC6 NA 0 NA 0.491 1 NA NA NA NA NA LTS-021 chr16 16308155 18804134 2495980 * c(MIR3179-2, ARL6IP1, NOMO2, PKD1P1, ABCC6, NOMO3, RPS15A, XYLT1, ABCC6P1) 0.363307925573145 5 0.212524586812914 0.776605349006798 307 0.571056546363474 2 1 1 -6.73407483629768 LTS-021 chr16 18804135 18861335 57201 * c(SMG1, ARL6IP1) 0.362352881383165 7 0.173119144219344 0.99797006616405 291 0.396083059559373 3 2 1 -6.73506273099498 LTS-021 chr16 18861336 18869434 8099 * SMG1 0 1 NA 0.841406327064322 34 0.436981190219969 2 2 0 -5.76453021013624 LTS-021 chr16 18869435 19896618 1027184 * c(COQ7, IQCK, ITPRIPL2, SMG1, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, TMC5, TMC7, CCP110) 0.168597277485067 22 0.214356709018633 1.07057986520988 1120 0.607262438810598 4 4 0 -6.77713257323845 LTS-021 chr16 19896619 20396203 499585 * c(GPR139, PDILT, GP2, GPRC5B, UMOD) 0.0416332338840332 8 0.145310443533836 0.708352257555571 286 0.433707166678923 5 5 0 -7.84565641141923 LTS-021 chr16 20396204 20435262 39059 * c(PDILT, ACSM5) 0.43 1 NA 0.672184504288872 29 0.471872598026706 1 1 0 -5.76480259442223 LTS-021 chr16 20435263 20599432 164170 * c(ACSM2A, ACSM2B, ACSM5) 0.366104228905146 7 0.166443040450136 0.56043406689545 209 0.37866309068091 0 0 0 -6.75125691559825 LTS-021 chr16 20599433 20601839 2407 * character(0) NA 0 NA 1.354 1 NA NA NA NA NA LTS-021 chr16 20601840 20753123 151284 * c(ACSM1, THUMPD1) 0.378858554835946 7 0.168734223248392 0.93898306804838 137 0.48306886367291 3 2 1 -6.74544078928101 LTS-021 chr16 20753124 20792180 39057 * c(ERI2, THUMPD1, ACSM3) 0 1 NA 0.777774419329237 41 0.747230546099656 2 2 0 -5.7644142833729 LTS-021 chr16 20792181 27230453 6438273 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, C16orf82, GGA2, NPIPB3, PDZD9, ANKS4B, TNRC6A, EEF2K, ZKSCAN2, AQP8, SLC7A5P2, CRYM-AS1, NDUFAB1, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, DNAH3, POLR3E, PRKCB, UBFD1, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, NA NA NA NA NA NA NA NA NA LTS-021 RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.169200272573503 99 0.222705148985983 0.957360447306538 4853 0.526286316762433 3 3 0 -6.83494726270543 LTS-021 NA NA NA NA LTS-021 chr16 27230454 27231740 1287 * KDM8 0.374 1 NA 0.795722897859045 3 0.379666081357465 2 2 0 -5.7644110215702 LTS-021 chr16 27231741 27974487 742747 * c(GSG1L, NSMCE1, KIAA0556, IL21R-AS1, GTF3C1, IL4R, FLJ21408, IL21R, KDM8) 0.278536102792881 30 0.206633263893126 0.882055659555487 775 0.48308196779315 3 3 0 -6.74564573016308 LTS-021 chr16 27974488 28123152 148665 * c(GSG1L, XPO6) NA 0 NA 0.870343155974168 50 0.301647872154786 3 NA NA -5.77001320585335 LTS-021 chr16 28123153 28331521 208369 * c(XPO6, SBK1) 0 1 NA 1.2130204142588 123 0.658261649680599 5 5 0 -5.76460659421644 LTS-021 chr16 28331522 28608392 276871 * c(SGF29, CLN3, IL27, NUPR1, SBK1, APOBR, SULT1A2) 0.110090771629166 6 0.185716630021834 1.1972192740267 386 0.552185316715044 7 7 0 -6.81823147946509 LTS-021 chr16 28608393 28734890 126498 * SULT1A1 0 1 NA 0.630112025717597 96 0.508436820067154 1 1 0 -5.76441387307601 LTS-021 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.665 1 NA NA NA NA NA LTS-021 chr16 28834304 29141381 307078 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.00180476985926913 12 0.00461880215351701 1.04968008323701 830 0.501013964484335 20 20 0 -19.5302919575428 LTS-021 chr16 29141382 29141436 55 * character(0) 0.48 1 NA 0.965010810630865 3 0.345492884634884 3 3 0 -5.76441034163244 LTS-021 chr16 29141437 31574966 2433530 * c(MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, NA NA NA NA NA NA NA NA NA LTS-021 TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.219921649306493 87 0.221826691950484 1.05681340970722 5843 0.593334438910377 4 4 0 -6.73797946429761 LTS-021 NA NA NA NA LTS-021 chr16 31574967 31575244 278 * character(0) NA 0 NA 0.458 1 NA NA NA NA NA LTS-021 chr16 31575245 31805156 229912 * c(CLUHP3, ZNF720, YBX3P1) 0.274459449328187 4 0.196309916543544 0.505653859261414 187 0.286080717107239 0 0 0 -6.84464187698804 LTS-021 chr16 31805157 31805267 111 * character(0) NA 0 NA 1.337 1 NA NA NA NA NA LTS-021 chr16 31805268 34300626 2495359 * c(ZNF267, SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.327815968602509 59 0.125162629449197 1.00205400225788 442 0.735911152592701 4 3 1 -6.75516675360285 LTS-021 chr16 34300627 34682380 381754 * c(LINC01566, UBE2MP1) NA 0 NA 0.754102781776022 63 0.456659247363683 2 NA NA -5.76624247754663 LTS-021 chr16 46508169 46534265 26097 * ANKRD26P1 0 1 NA 0.877127557093637 37 0.652742213969572 3 3 0 -5.76457942024315 LTS-021 chr16 46534266 53355164 6820899 * c(LINC00919, LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, CASC16, SIAH1, SHCBP1, CHD9, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.144079097633982 63 0.211555577607386 0.960046318234307 3431 0.551615494609042 3 3 0 -6.91256699468944 LTS-021 chr16 53355165 53358439 3275 * CHD9 0.436 1 NA 0.734335917759446 17 0.235476784793046 2 2 0 -5.76457112558632 LTS-021 chr16 53358440 55883618 2525179 * c(IRX5, CES1, CES5A, RPGRIP1L, CES1P2, MMP2, CES1P1, LPCAT2, RBL2, LOC643802, CRNDE, AKTIP, SLC6A2, FTO, IRX6, IRX3, CHD9, CAPNS2) 0.36132970343564 51 0.167539448091089 0.885437745915187 1403 0.534234658542946 3 2 1 -6.75208492613085 LTS-021 chr16 55883619 55895395 11777 * CES5A 0 1 NA 0.786096431169632 17 0.710038508690571 2 2 0 -5.76441014152873 LTS-021 chr16 55895396 55989898 94503 * CES5A 0.0657523480748824 5 0.144897204941986 0.7709048274649 61 0.762875959450943 13 13 0 -6.90726550903556 LTS-021 chr16 55989899 57953010 1963112 * c(MIR3935, KATNB1, CETP, NUDT21, CNGB1, CPNE2, ADGRG5, CES5A, ADGRG3, ARL2BP, DKFZP434H168, AMFR, GNAO1, LOC283856, MT1DP, KIFC3, LOC388282, MIR138-2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, POLR2C, OGFOD1, DOK4, COQ9, CIAPIN1, BBS2, CCL17, CCL22, CX3CL1, MT1IP, SLC12A3, FAM192A, NLRC5, DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.272170417877194 85 0.212503697776362 1.03062533597559 3040 0.602812714394526 3 3 0 -6.76338732811018 LTS-021 chr16 57953011 57996745 43735 * CNGB1 0 1 NA 1.11930593252445 71 0.730820770635836 4 4 0 -5.76444030614895 LTS-021 chr16 57996746 58293859 297114 * c(CNGB1, CSNK2A2, CCDC113, CFAP20, TEPP, MMP15, ZNF319, USB1) 0.0878311469570063 13 0.192432172532664 1.06364710978216 423 0.696205847600069 8 8 0 -6.87461938949315 LTS-021 chr16 58293860 58314433 20574 * c(PRSS54, CCDC113) 0.493 1 NA 0.732525424047305 37 0.387569449361115 2 2 0 -5.76481140573937 LTS-021 chr16 58314434 58317024 2591 * c(PRSS54, CCDC113) 0.391283941396968 9 0.163852660779264 0.839776626200985 53 0.523357652992959 2 1 1 -6.75840967872933 LTS-021 chr16 58317025 58327633 10609 * c(PRSS54, CCDC113) 0 1 NA 0.901876514323681 31 0.561169029410829 3 3 0 -5.76444254969662 LTS-021 chr16 58327634 58498407 170774 * c(PRSS54, GINS3, NDRG4) 0.441863507935345 2 0.0212132034355964 0.986997595835481 68 0.678576508522972 4 2 2 -11.0125333730298 LTS-021 chr16 58498408 58700615 202208 * c(CNOT1, SLC38A7, NDRG4, SNORA46, SNORA50A, SETD6) 0 7 0 1.32905520859424 521 0.62689146109498 0 0 0 -Inf LTS-021 chr16 58700616 58712670 12055 * SLC38A7 0 1 NA 0.868996078900735 59 0.603453802796765 3 3 0 -5.76452845756909 LTS-021 chr16 58712671 58743454 30784 * c(GOT2, SLC38A7) 0.382 1 NA 0.736914909683905 43 0.504710144549398 2 2 0 -5.76470624061204 LTS-021 chr16 58743455 64979976 6236522 * c(CDH8, GOT2, APOOP5) 0.286162335450587 11 0.20358527362352 0.754727408776545 241 0.439625386076586 2 2 0 -6.76670456524613 LTS-021 chr16 64979977 64980035 59 * character(0) 0 1 NA 0.765370408042766 3 0.955308501654483 2 2 0 -5.76441016046662 LTS-021 chr16 64980036 65087892 107857 * CDH11 0.124988660875996 3 0.229208056868281 0.706556812844747 120 0.332059321819585 4 4 0 -6.95763586931966 LTS-021 chr16 65087893 65155696 67804 * CDH11 NA 0 NA 1.305 1 NA NA NA NA NA LTS-021 chr16 65155697 67690805 2535109 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CDH16, CTCF, CMTM1, CMTM3, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, DYNC1LI2, AGRP, E2F4, CES3, PLEKHG4, LRRC29, TERB1, CES4A, EXOC3L1, LINC00922, TMEM208, FHOD1, ZDHHC1, HSD11B2, HSF4, MIR328, CKLF, FAM96B, TPPP3, LRRC36, FBXL8, PDP2, RRAD, KIAA0895L, SLC9A5, TK2, CA7, FAM65A, ELMO3, C16orf70, B3GNT9, CBFB, TRADD, CES2, NAE1, NOL3, ATP6V0D1) 0.12514707187938 34 0.204741191353182 1.03822642303071 3328 0.526252064795788 4 4 0 -6.89047889124426 LTS-021 chr16 67690806 67691477 672 * c(CARMIL2, ACD) 0.45 1 NA 0.870003110797508 13 0.60101504951506 3 3 0 -5.76441657714256 LTS-021 chr16 67691478 68225515 534038 * c(NUTF2, NRN1L, CTRL, EDC4, C16orf86, LCAT, NFATC3, PARD6A, DUS2, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, DPEP2, DPEP3, ACD, SLC12A4, CENPT, GFOD2, ENKD1) 0.282859801457328 22 0.218361370923724 0.960734889799537 1434 0.425951133778019 3 3 0 -6.74098201610028 LTS-021 chr16 68225516 68259901 34386 * NFATC3 0 1 NA 0.936091543719054 17 0.787082368251103 3 3 0 -5.76441039796329 LTS-021 chr16 68259902 68857303 597402 * c(CDH3, ZFP90, PLA2G15, NFATC3, PRMT7, SMPD3, ESRP2, SLC7A6OS, SLC7A6, CDH1) 0.00155912287732633 13 0.00443760156980183 1.07285762444119 881 0.602755909353403 20 20 0 -20.0129643506889 LTS-021 chr16 68857304 68868522 11219 * CDH1 0.477 1 NA 1.41626692115234 43 0.46393396540078 6 6 0 -5.76441524818316 LTS-021 chr16 68868523 70211218 1342696 * c(MIR1538, MIR1972-1, NFAT5, WWP2, TMED6, NQO1, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, CHTF8, PDPR, PDF, SNTB2, TERF2, TANGO6, CYB5B, COG8, UTP4, CDH1) 0.278904278039916 21 0.206432347963478 1.02139990842502 1677 0.564994526067067 3 3 0 -6.75638726399592 LTS-021 chr16 70211219 70346593 135375 * c(SMG1P7, DDX19B, EXOSC6, AARS, CLEC18C, DDX19A) 0 1 NA 1.21312130811503 163 0.569932342567206 5 5 0 -5.76457931775543 LTS-021 chr16 70346594 70817479 470886 * c(SNORD111B, VAC14-AS1, LOC100506083, DDX19B, IL34, FUK, SF3B3, COG4, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.141630782103564 11 0.214105114371423 1.11651909032451 1028 0.548357657258475 5 5 0 -6.78943669715902 LTS-021 chr16 70817480 70889147 71668 * c(HYDIN, VAC14) 0.464 1 NA 1.10323484526694 108 0.531301312631948 4 4 0 -5.76442635574054 LTS-021 chr16 70889148 71406024 516877 * c(HYDIN, CMTR2, CALB2) 0.435673952033918 72 0.0555818965331539 0.885510524854949 671 0.397265414592594 2 1 1 -7.76047644840081 LTS-021 chr16 71406025 71417783 11759 * CALB2 0.246 1 NA 0.89850878877527 25 0.320371045300081 3 3 0 -5.7645419275172 LTS-021 chr16 71417784 71508025 90242 * c(ZNF19, ZNF23, CALB2) 0.146353078781822 11 0.230374201522811 1.00576103822159 155 0.810956685881684 7 7 0 -6.75169674868794 LTS-021 chr16 71508026 71509796 1771 * c(ZNF19, ZNF23) 0.45 1 NA 0.909426640526244 35 0.267285347789319 3 3 0 -5.76442508281292 LTS-021 chr16 71509797 72020323 510527 * c(SNORA70D, CHST4, AP1G1, PHLPP2, ATXN1L, PKD1L3, ZNF821, TAT, SNORD71, ZNF19, ZNF23, MARVELD3, IST1) 0.350492148418762 33 0.175492537396375 1.02914920669872 929 0.603951964543956 4 2 2 -6.73693570280401 LTS-021 chr16 72020324 72057089 36766 * c(DHODH, PKD1L3) 0.013 1 NA 1.04355129379534 53 0.877716233142367 4 4 0 -5.76446888737719 LTS-021 chr16 72057090 72992659 935570 * c(DHODH, HP, HPR, ZFHX3, TXNL4B, PMFBP1, DHX38) 0.0470502761728788 10 0.14704591119783 1.08034184116236 718 0.581214875643934 6 6 0 -7.29614299395478 LTS-021 chr16 72992660 72993831 1172 * ZFHX3 0.429 1 NA 1.22772660330109 25 0.193022252603165 5 5 0 -5.76441385402436 LTS-021 chr16 72993832 74752969 1759138 * c(LINC01568, MLKL, GLG1, HCCAT5, LOC283922, ZFHX3, CLEC18B, RFWD3, PSMD7, FA2H) 0.271675612909142 19 0.224182921865472 1.11365837013487 667 0.648485060598814 4 4 0 -6.75827972244588 LTS-021 chr16 74752970 74808425 55456 * FA2H 0.477 1 NA 1.20909255894248 21 0.47816604009984 5 5 0 -5.7645353868287 LTS-021 chr16 74808426 75564287 755862 * c(CFDP1, TMEM170A, CTRB1, ZFP1, LDHD, CHST5, CHST6, CTRB2, FA2H, WDR59, ZNRF1, BCAR1) 0.461563394182951 12 0.0474005338161988 1.09233830623147 750 0.757276111148532 4 2 2 -8.75707244963683 LTS-021 chr16 75564288 75564612 325 * CHST5 0 1 NA 0.769531964357305 8 0.431082358720465 2 2 0 -5.76441057842482 LTS-021 chr16 75564613 79245762 3681150 * c(SYCE1L, MIR4719, CLEC3A, GABARAPL2, ADAMTS18, MON1B, ADAT1, CHST5, NUDT7, KARS, WWOX, TERF2IP, VAT1L, TMEM231, CNTNAP4) 0.276174488621858 31 0.211364354427563 0.987198518899452 1015 0.544580321332282 3 3 0 -6.75569085993207 LTS-021 chr16 79245763 83813514 4567752 * c(LOC100129617, MIR3182, MIR4720, CDH13, MPHOSPH6, PKD1L2, C16orf46, CDYL2, ATMIN, GCSH, HSD17B2, MAF, WWOX, PLCG2, BCO1, CENPN, CMC2, CMIP, GAN, DYNLRB2, SDR42E1) 0.259549494783394 87 0.112474145058331 0.700040859927857 1623 0.388540275141849 2 2 0 -7.04202307663734 LTS-021 chr16 83813515 83948860 135346 * c(CDH13, MLYCD, HSBP1) 0 1 NA 0.788806754755236 81 0.706384965471693 2 2 0 -5.76441292729781 LTS-021 chr16 83948861 84438772 489912 * c(DNAAF1, SLC38A8, ADAD2, MLYCD, OSGIN1, NECAB2, WFDC1, HSDL1, MBTPS1, TAF1C, KCNG4, ATP2C2) 0.0622631425048027 16 0.156037054894022 0.75149796339237 781 0.507902913869312 5 5 0 -7.44865880093233 LTS-021 chr16 84438773 84492984 54212 * ATP2C2 0.212 1 NA 0.657293852172803 83 0.260326922112805 1 1 0 -5.76512758134142 LTS-021 chr16 84492985 90106875 5613891 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, NA NA NA NA NA NA NA NA NA LTS-021 LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, USP10, CENPBD1, ZNF276, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.195485330049352 207 0.135446700882952 0.711445718869067 6127 0.577088075376864 2 2 0 -7.16901607570079 LTS-021 NA NA NA NA LTS-021 chr16 90106876 90108679 1804 * c(URAHP, GAS8) NA 0 NA 0.476 1 NA NA NA NA NA LTS-021 chr16 90108680 90130138 21459 * c(URAHP, PRDM7, GAS8) 0 1 NA 0.480122108435943 111 0.26122848406045 0 0 0 -5.76441085783378 LTS-021 chr16 90130139 90161242 31104 * PRDM7 NA 0 NA 0.56359022112263 29 0.429865232632974 1 NA NA -5.76574868080122 LTS-021 chr17 6004 12057 6054 * DOC2B 0 1 NA 1.37261068904567 15 1.08207772804166 6 6 0 -5.76441119880529 LTS-021 chr17 12058 1960433 1948376 * c(DBIL5P, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MYO1C, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, RPA1, NXN, BHLHA9, TLCD2, YWHAE, FAM57A, RILP, DOC2B, MIR22HG, SCARF1, RPH3AL) 0.119062504238654 65 0.111409926104523 1.53402963484571 2638 1.19805988994196 9 9 0 -6.77970120515546 LTS-021 chr17 1960434 1960727 294 * HIC1 NA 0 NA 1.94950445148496 7 0.541123214557769 10 NA NA -5.76441071369321 LTS-021 chr17 1960728 1960730 3 * HIC1 NA 0 NA 0.997 1 NA NA NA NA NA LTS-021 chr17 1960731 2091765 131035 * c(SMG6, HIC1) 0.364 1 NA 1.10968418023795 77 0.454535871156664 4 4 0 -5.76450936181243 LTS-021 chr17 2091766 2937725 845960 * c(MIR1253, RAP1GAP2, CLUH, SMG6, LOC284009, MNT, PAFAH1B1, TSR1, SRR, SNORD91A, SNORD91B, METTL16, SGSM2) 0.203597730719753 24 0.125647302260006 0.825137809602471 860 0.491948870434082 3 3 0 -6.88318869040602 LTS-021 chr17 2937726 3386899 449174 * c(RAP1GAP2, OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.216034590945174 7 0.176627668651696 0.381804363550684 310 0.309922373316274 0 0 0 -7.2389993062403 LTS-021 chr17 3386900 3392554 5655 * c(ASPA, SPATA22) NA 0 NA 0.613 1 NA NA NA NA NA LTS-021 chr17 3392555 10233735 6841181 * c(LOC100128288, C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, NA NA NA NA NA NA NA NA NA LTS-021 DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ASPA, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 UBE2G1, TRPV1, ZNF232, MIS12, PHF23, CTC1, NDEL1, PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.174022285214838 350 0.146925162128465 0.744462236971985 13164 0.399100692497116 2 2 0 -7.21880498278043 LTS-021 NA NA NA NA LTS-021 chr17 10233736 10233834 99 * MYH13 NA 0 NA 0.478 1 NA NA NA NA NA LTS-021 chr17 10233835 10532025 298191 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.103779441216639 15 0.164687091465112 0.466247669828412 833 0.248156216252191 0 0 0 -7.90440225641145 LTS-021 chr17 10532026 10532946 921 * MYH3 NA 0 NA 0.942 1 NA NA NA NA NA LTS-021 chr17 10532947 15406301 4873355 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, COX10, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH3, PMP22, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.115489156874314 46 0.152953391909491 0.617484384423255 2031 0.373639553482089 1 1 0 -7.84661528008101 LTS-021 chr17 15406302 15644037 237736 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A) 0.193885249894567 8 0.127384050919145 0.394180476481396 517 0.360426678581372 2 2 0 -7.60514949233177 LTS-021 chr17 15644038 15644443 406 * TBC1D26 NA 0 NA 0.64 1 NA NA NA NA NA LTS-021 chr17 15644444 17495084 1850641 * c(FAM106CP, MIR1288, PEMT, LRRC75A-AS1, ZSWIM7, ADORA2B, NA, USP32P1, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, KRT16P2, MEIS3P1, TRPV2, RASD1, TTC19, MED9, NT5M, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, COPS3, PIGL, NCOR1, CCDC144A) 0.185261934178497 26 0.155912480380698 0.708270265187577 1827 0.842647068284314 3 3 0 -6.98680212133934 LTS-021 chr17 17495085 17681972 186888 * c(RAI1, SMCR5) NA 0 NA 0.356 1 NA NA NA NA NA LTS-021 chr17 17681973 17701185 19213 * c(RAI1, SMCR5) 0.375 1 NA 0.321455196266544 119 0.130102902093581 0 0 0 -5.8710313892256 LTS-021 chr17 17701186 18315241 614056 * c(RAI1, MIEF2, SMCR8, TOM1L2, DRG2, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, ATPAF2) 0.198257956860975 42 0.152469461537417 0.740664505382801 1852 0.46842328334344 3 3 0 -6.92039407493509 LTS-021 chr17 18315242 18483362 168121 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0 1 NA 0.162958247632635 78 0.228831893096297 0 0 0 -7.43813189389814 LTS-021 chr17 18483363 18486728 3366 * CCDC144B NA 0 NA 0.368 1 NA NA NA NA NA LTS-021 chr17 18486729 18710079 223351 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, ZNF286B) 0.24510706522957 20 0.156598472466839 0.409644175209512 493 0.408503243498602 0 0 0 -7.04938116160248 LTS-021 chr17 18710080 18769081 59002 * PRPSAP2 NA 0 NA 0.535 1 NA NA NA NA NA LTS-021 chr17 18769082 20630207 1861126 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, CDRT15L2, B9D1, LGALS9B, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.142299072477796 57 0.143534572695561 0.693684919644848 1910 0.407862395171959 2 2 0 -7.48481663319337 LTS-021 chr17 20630208 20640352 10145 * LOC100287072 NA 0 NA 0.456 1 NA NA NA NA NA LTS-021 chr17 20640353 20689427 49075 * LOC100287072 0 2 0 0.40506656254669 28 0.703988616543068 0 0 0 -Inf LTS-021 chr17 20689428 20768839 79412 * CCDC144NL NA 0 NA 0.278061883171859 33 0.154848533030889 0 NA NA -6.30183333618038 LTS-021 chr17 20768840 20799137 30298 * CCDC144NL NA 0 NA 0.804 1 NA NA NA NA NA LTS-021 chr17 20799138 20903068 103931 * c(USP22, CCDC144NL) 0.407 1 NA 0.675908500745828 11 0.387661778546009 1 1 0 -5.76624961003459 LTS-021 chr17 20903069 22066807 1163739 * c(MTRNR2L1, USP22, NATD1, DHRS7B, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3, TMEM11) 0.308695100892371 93 0.0849129301319876 0.716194747308249 685 0.525560427844251 2 2 0 -6.76065004666059 LTS-021 chr17 22066808 22066858 51 * character(0) NA 0 NA 0.461 1 NA NA NA NA NA LTS-021 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.148 1 NA 0.605567856374923 21 0.17745270328953 1 1 0 -5.76475127032081 LTS-021 chr17 25630389 29703750 4073362 * c(MIR3184, SPAG5-AS1, MIR4523, MIR4733, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, LYRM9, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, EFCAB5, TMIGD1, LGALS9, MYO18A, MIR144, TBC1D3P5, SUZ12P1, NF1, NOS2, NA NA NA NA NA NA NA NA NA LTS-021 MIR423, OMG, DPRXP4, PIPOX, CRLF3, NLK, FAM222B, ADAP2, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, BLMH, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, TNFAIP1, VTN, TEFM, ATAD5, RAB34, NSRP1, RNF135, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.0846330319428536 107 0.142290569139172 0.715137097033407 6205 0.427248283329727 2 2 0 -7.98151078616309 LTS-021 NA NA NA NA LTS-021 chr17 29703751 29704002 252 * NF1 0.262 1 NA 0.912181438300822 7 0.360531750137409 3 3 0 -5.76441108807264 LTS-021 chr17 29704003 30708923 1004921 * c(MIR365B, MIR4724, MIR4725, LRRC37B, RHBDL3, SUZ12, MIR193A, NF1, ARGFXP2, RHOT1, COPRS, UTP6, C17orf75, SH3GL1P1, MIR632, ZNF207, RAB11FIP4) 0.156840653444411 19 0.149316023432856 0.751562200605321 1172 0.514629948576659 3 3 0 -7.1133041501985 LTS-021 chr17 30708924 30714663 5740 * character(0) NA 0 NA 0.609 1 NA NA NA NA NA LTS-021 chr17 30714664 34417492 3702829 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MYO1D, PEX12, NLE1, FNDC8, SLFN12, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, CDK5R1, ZNF830, SLFN11, RASL10B) 0.153232515563223 72 0.15334252881184 0.639069130907036 3045 0.431583130048187 1 1 0 -7.5383321608693 LTS-021 chr17 34417493 34431045 13553 * CCL3 NA 0 NA 0.148 1 NA NA NA NA NA LTS-021 chr17 34431046 34641761 210716 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.284660645862332 65 0.269615309105114 0 NA NA -6.20251437963224 LTS-021 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.577 1 NA NA NA NA NA LTS-021 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.142955229146917 20 0.140040257369838 0.70040836145302 1576 0.505842625534932 3 3 0 -7.38824784453483 LTS-021 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.178 1 NA NA NA NA NA LTS-021 chr17 36351756 36375187 23432 * LOC440434 0.413 1 NA 0.180235495905588 60 0.194159823356043 0 0 0 -6.10132837398436 LTS-021 chr17 36375188 36384845 9658 * LOC440434 NA 0 NA 0.603 1 NA NA NA NA NA LTS-021 chr17 36384846 36485238 100393 * c(LOC440434, GPR179, MRPL45) 0 2 0 0.514597638306734 150 0.38503106873682 0 0 0 -Inf LTS-021 chr17 36485239 38811474 2326236 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, CISD3, GSDMA, GRB7, SOCS7, MSL1, LRRC37A11P, STAC2, IGFBP4, C17orf98, ARL5C, LASP1, MLLT6, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, PCGF2, CACNB1, NA NA NA NA NA NA NA NA NA LTS-021 SRCIN1, PIP4K2B, PPP1R1B, MIEN1, TNS4, FBXL20, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.157846874538002 99 0.156403022286444 0.775864620246621 5021 0.443066150796286 2 2 0 -7.19360455398157 LTS-021 NA NA NA NA LTS-021 chr17 38811475 39623736 812262 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, NA NA NA NA NA NA NA NA NA LTS-021 KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, KRT38, KRT37) 0.22039810808306 50 0.131318557993413 0.555200795346236 1623 0.344969533436618 1 1 0 -7.28602006705103 LTS-021 NA NA NA NA LTS-021 chr17 39623737 39632930 9194 * character(0) NA 0 NA 0.769 1 NA NA NA NA NA LTS-021 chr17 39632931 43316454 3683524 * c(LINC00910, HDAC5, RAMP2-AS1, MIR2117, GJC1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, KRT42P, NA NA NA NA NA NA NA NA NA LTS-021 PTRF, NKIRAS2, COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, LINC00671, CCDC103, KRT35, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, FKBP10, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, VPS25, TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT36, HAP1, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.147503424171143 151 0.150473489924232 0.761272019982788 7798 0.44402540177533 2 2 0 -7.3053764049647 LTS-021 NA NA NA NA LTS-021 chr17 43316455 43319770 3316 * FMNL1 0.275 1 NA 1.27783725840562 27 2.15578666705362 5 5 0 -5.76441042309668 LTS-021 chr17 43319771 43903016 583246 * c(MAP3K14-AS1, SPATA32, FMNL1, MAP3K14) 0.234432739588768 16 0.155502505338874 0.740165101189094 525 0.376842956259365 2 2 0 -6.84696223691728 LTS-021 chr17 43903017 43906523 3507 * character(0) NA 0 NA 0.348 1 NA NA NA NA NA LTS-021 chr17 43906524 44061298 154775 * character(0) 0.29772820752289 19 0.0868032324835351 0.451766081327398 147 0.190599284671057 0 0 0 -7.0180757714145 LTS-021 chr17 44061299 44061317 19 * character(0) 0.299 1 NA 2.118 1 NA NA NA NA NA LTS-021 chr17 44061318 45369789 1308472 * c(MIR5089, ITGB3, RPRML, MYL4, WNT3, WNT9B, GOSR2, CDC27) 0.313181933643157 60 0.117556683046153 0.795885444541288 889 0.464061473051449 2 2 0 -6.74104318237353 LTS-021 chr17 45369790 45380082 10293 * ITGB3 0 1 NA 0.778991424440033 15 0.441803123574291 2 2 0 -5.76441235575908 LTS-021 chr17 45380083 48913478 3533396 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, CHAD, KAT7, NXPH3, SNF8, OSBPL7, WFIKKN2, FLJ40194, B4GALNT2, EFCAB13, MRPL10, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, HILS1, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NA NA NA NA NA NA NA NA NA LTS-021 NFE2L1, NGFR, ABI3, COPZ2, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, LINC00483, EPN3, PNPO, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, UBE2Z, MRPL45P2, SP2, FLJ45513, PRR15L, ACSF2, CDK5RAP3, SP6, FAM117A, SPOP, MYCBPAP, PRAC1, PPP1R9B, SKAP1, ABCC3, CACNA1G, LRRC46, SCRN2, ANKRD40, NPEPPS, TBKBP1) 0.150334794084975 143 0.140815405513817 0.723795044751435 6267 0.423699760965528 2 2 0 -7.42319582635152 LTS-021 NA NA NA NA LTS-021 chr17 48913479 48917333 3855 * WFIKKN2 0.365 1 NA 0.452305002561101 15 0.0947924047590312 0 0 0 -5.76526755789801 LTS-021 chr17 48917334 49249186 331853 * c(TOB1, WFIKKN2, TOB1-AS1, NME1, NME2, NME1-NME2, SPAG9) 0.332966216967912 17 0.0994204899582043 0.756068511205767 445 0.364845863384454 2 1 1 -6.7716211639779 LTS-021 chr17 49249187 49256665 7479 * MBTD1 0 1 NA 0.832567026236082 37 0.240565821376218 2 2 0 -5.76467214704347 LTS-021 chr17 49256666 49371472 114807 * c(UTP18, MBTD1) 0.102076017610727 5 0.135322577569303 0.737666278006651 197 0.391066668591334 7 7 0 -7.09249981236324 LTS-021 chr17 49371473 54893343 5521871 * c(TOM1L1, C17orf112, COX11, ANKFN1, MMD, STXBP4, HLF, C17orf67, UTP18, TMEM100, CA10, PCTP, KIF2B, NOG) 0.12224747859908 21 0.167117665989309 0.56852203927042 731 0.350507838632926 1 1 0 -7.92420241543028 LTS-021 chr17 54893344 58176778 3283435 * c(MIR3614, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, CLTC, HSF5, OR4D2, MSI2, DYNLL2, PPM1E, MTVR2, OR4D1, C17orf47, GDPD1, C17orf67, SKA2, RNF126P1, YPEL2, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TRIM37, RNFT1, TUBD1, MRPS23, PTRH2, SEPT4, RNF43, MKS1, SMG8, MSX2P1, PRR11, TEX14, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, SUPT4H1, MIR454, TRIM25, VEZF1, DHX40, COIL, AKAP1, NA NA NA NA NA NA NA NA NA LTS-021 VMP1, EPX, DGKE, MTMR4, TSPOAP1) 0.0900250115095788 48 0.140809587678785 0.706006089064875 3138 0.410509912996236 2 2 0 -7.9682841320428 LTS-021 NA NA NA NA LTS-021 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.192 1 NA NA NA NA NA LTS-021 chr17 58177075 58180107 3033 * LOC653653 NA 0 NA 0.291332393141402 63 0.120433720801073 0 NA NA -5.79530864809346 LTS-021 chr17 58180108 58227299 47192 * LOC653653 NA 0 NA 0.801 1 NA NA NA NA NA LTS-021 chr17 58227300 61791527 3564228 * c(DCAF7, APPBP2, TLK2, C17orf64, EFCAB3, CYB561, MARCH10, ACE, TANC2, METTL2A, NACA2, C17orf82, MAP3K3, TBC1D3P2, TACO1, BCAS3, INTS2, SCARNA20, TBX2, LOC729683, CA4, LIMD2, KCNH6, BRIP1, USP32, PPM1D, STRADA, TBX4, MRC2, MED13) 0.116688194450018 44 0.148426381051234 0.672036390442971 2353 0.374024681075241 2 2 0 -7.88373638802809 LTS-021 chr17 61791528 61805607 14080 * STRADA 0.283 1 NA 0.567511171618905 15 0.14091040719955 1 1 0 -5.76938722440918 LTS-021 chr17 61805608 71746551 9940944 * c(SNORA38B, LINC00674, LINC00673, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, DDX5, CEP112, SLC39A11, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, CDC42EP4, NOL11, PITPNC1, GH1, GH2, CACNG5, CACNG4, LINC00469, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, LINC00511, PLEKHM1P1, LOC440461, AMZ2, PECAM1, NA NA NA NA NA NA NA NA NA LTS-021 SDK2, FAM20A, C17orf80, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, SCN4A, CPSF4L, SMURF2, SMARCD2, SOX9, SSTR2, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, FAM104A, RGS9, CEP95, SLC16A6, STRADA, PRR29, COG1, CD79B, HELZ) 0.201322520683452 110 0.149633965405594 0.699317941402403 5276 0.3584721391263 2 2 0 -7.55366406069531 LTS-021 NA NA NA NA LTS-021 chr17 71746552 72741653 995102 * c(CD300LD, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, LINC00469, RAB37, CD300E, GPR142, BTBD17, LOC400620, GPRC5C, RPL38, DNAI2, MGC16275, TTYH2) 0.159310213702025 49 0.167583292317419 0.572435792463755 1094 0.395473043896309 1 1 0 -7.41870660980423 LTS-021 chr17 72741654 72741727 74 * RAB37 NA 0 NA 1.064 1 NA NA NA NA NA LTS-021 chr17 72741728 80363378 7621651 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, NA NA NA NA NA NA NA NA NA LTS-021 SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, OTOP3, MCRIP1, ZACN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.183110061557292 392 0.14599366961327 0.758752511009366 12762 0.448339310677634 2 2 0 -7.12293897571655 LTS-021 NA NA NA NA LTS-021 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.847 1 NA NA NA NA NA LTS-021 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.214 1 NA 1.97965503174898 39 1.0510282864126 10 10 0 -5.7644132399875 LTS-021 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.572 1 NA NA NA NA NA LTS-021 chr17 80391535 81043039 651505 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.195227253565975 25 0.134918802741995 0.847734729390449 878 0.386446108689605 3 3 0 -6.89228313091446 LTS-021 chr17 81043040 81083625 40586 * METRNL NA 0 NA 0.677051810380809 25 0.270673160841632 1 NA NA -5.76595939611331 LTS-021 chr18 116845 122072 5228 * ROCK1P1 0.414 1 NA 0.443916508045834 57 0.274590930655029 0 0 0 -5.76465320102209 LTS-021 chr18 122073 2946541 2824469 * c(NDC80, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, USP14, LPIN2, THOC1) 0.234726935318522 31 0.231596947813565 0.957870529118065 1340 0.52384581865835 3 3 0 -6.74226701761904 LTS-021 chr18 2946542 3100429 153888 * c(LOC727896, MYOM1, LPIN2) 0.467 1 NA 1.02335948143824 90 0.587573316380473 4 4 0 -5.76553419129232 LTS-021 chr18 3100430 3497852 397423 * c(MYL12B, MYL12A, TGIF1, MYOM1, DLGAP1) 0.420772028498573 11 0.0482357845286143 1.0319672712728 353 0.466985581764409 4 2 2 -7.62301354395793 LTS-021 chr18 3497853 3498652 800 * DLGAP1 0 1 NA 1.02510590733862 17 0.935622771520785 4 4 0 -5.76441231732342 LTS-021 chr18 3498653 9792254 6293602 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, RALBP1, RAB31, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1, PPP4R1) 0.214611393566618 59 0.219760013359242 0.938070625892768 2351 0.538723093337522 3 3 0 -6.75769401072194 LTS-021 chr18 9792255 9887546 95292 * c(RAB31, TXNDC2) 0.442 1 NA 0.877289701776176 49 0.497935738825805 3 3 0 -5.76546647003252 LTS-021 chr18 9887547 13754231 3866685 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, APCDD1, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA) 0.283903289508213 63 0.201352761242068 0.986437701956061 2213 0.664183391553188 3 3 0 -6.75490594955456 LTS-021 chr18 13754232 13759906 5675 * RNMT NA 0 NA 0.446 1 NA NA NA NA NA LTS-021 chr18 13759907 14866503 1106597 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.46227743749417 6 0.0185553226864962 0.741138946987409 350 0.529184091110151 2 1 1 -12.7347381757129 LTS-021 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.32631305538228 33 0.779476510667139 6 NA NA -5.7647951765587 LTS-021 chr18 18529727 18530422 696 * ROCK1 0 1 NA 0.322551607087939 15 0.268560625415956 0 0 0 -5.76531582590263 LTS-021 chr18 18530423 18535127 4705 * ROCK1 NA 0 NA 0.355933620336055 44 0.159926864561451 0 NA NA -5.77415043734946 LTS-021 chr18 18535128 21395492 2860365 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ANKRD29, ABHD3, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.108921380385444 24 0.199666456473239 1.01720072145736 1735 0.58218300945788 4 4 0 -6.95949846100228 LTS-021 chr18 21395493 21404334 8842 * LAMA3 0.489 1 NA 0.780588375981889 21 0.271338007447748 2 2 0 -5.76441302250547 LTS-021 chr18 21404335 21708999 304665 * c(TTC39C, LAMA3) 0.392481005897075 9 0.147484744973845 1.02994992836818 397 0.493621335139238 4 2 2 -6.76909690220718 LTS-021 chr18 21709000 21736626 27627 * c(TTC39C, CABYR) 0 1 NA 0.732807625643476 58 0.503986745905482 2 2 0 -5.76472528992736 LTS-021 chr18 21736627 25591928 3855302 * c(CDH2, MIR320C2, OSBPL1A, PSMA8, AQP4-AS1, ZNF521, CABYR, KCTD1, AQP4, IMPACT, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.104619099445501 20 0.19387174273622 0.959408071395177 1078 0.555868145293746 4 4 0 -7.08397310189494 LTS-021 chr18 25591929 25616451 24523 * CDH2 0.491 1 NA 0.522338463998035 11 0.240283506792213 0 0 0 -5.76630452936936 LTS-021 chr18 25616452 28709748 3093297 * c(CDH2, MIR302F, DSC1, DSC2, DSC3) 0.307041225141286 6 0.244630878399818 0.964677665091363 268 0.48419444531366 3 2 1 -6.76146996998315 LTS-021 chr18 28709749 28934631 224883 * c(DSC1, DSG1) 0.337483759223692 8 0.215331637911651 0.806074763081842 198 0.447381601103117 2 1 1 -6.73867378900033 LTS-021 chr18 28934632 28970698 36067 * c(DSG4, DSG1) 0 1 NA 0.63942128118066 81 0.231493507095038 1 1 0 -5.76445986518328 LTS-021 chr18 28970699 29056477 85779 * c(DSG4, DSG3) 0.0696394440585707 9 0.194362276289522 0.741865760464553 187 0.592842572571359 9 9 0 -6.92688871336794 LTS-021 chr18 29056478 29098323 41846 * c(DSG2, DSG3) 0.494 1 NA 0.773915673045339 51 0.352493992717551 2 2 0 -5.76445509144032 LTS-021 chr18 29098324 29847002 748679 * c(DSG2-AS1, SLC25A52, DSG2, TRAPPC8, MEP1B, RNF138, RNF125, GAREM1, TTR, B4GALT6) 0.28338024986002 25 0.217277280603994 0.892404159504752 821 0.451675241750067 3 3 0 -6.74605240229031 LTS-021 chr18 29847003 30803103 956101 * c(CCDC178, WBP11P1, KLHL14, GAREM1) 0 1 NA 0.950405506048821 253 0.39598453920043 3 3 0 -5.76496930911455 LTS-021 chr18 30803104 31802011 998908 * c(CCDC178, ASXL3, NOL4) 0.101151448943224 10 0.216614763013871 0.855234201036678 346 0.571408901045493 4 4 0 -7.03508904649458 LTS-021 chr18 31802012 32459704 657693 * c(DTNA, NOL4) 0.431 1 NA 0.673895590424253 203 0.287571769572782 1 1 0 -5.78365557358267 LTS-021 chr18 32459705 32720754 261050 * c(MAPRE2, DTNA) NA 0 NA 0.799046718056882 71 0.279421404202972 2 NA NA -5.76499260546767 LTS-021 chr18 32720755 32887540 166786 * c(ZSCAN30, ZNF271P, MAPRE2, ZNF397) 0.428111729844004 11 0.0333324848376857 1.00774239317592 276 0.519489222980755 4 2 2 -8.65586796731632 LTS-021 chr18 32887541 32913186 25646 * c(ZNF271P, ZNF24) 0 1 NA 1.00086092429283 34 0.311599564778344 3 3 0 -5.76506101779492 LTS-021 chr18 32913187 43205630 10292444 * c(MIR4319, MIR4318, MIR3975, MIR5583-2, MIR5583-1, INO80C, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, LINC00907, MIR187, PIK3C3, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, RIT2, KC6, MIR924HG, SYT4, ZNF24, FHOD3, SLC14A2, C18orf21) 0.202972609227706 50 0.217376228916501 0.937987342659442 1940 0.639779113123595 3 3 0 -6.77299245989549 LTS-021 chr18 43205631 43243862 38232 * SLC14A2 0 1 NA 0.888189578875893 53 0.458510382305731 3 3 0 -5.76474426941455 LTS-021 chr18 43243863 43445722 201860 * c(SIGLEC15, EPG5, SLC14A1, SLC14A2) 0 11 0 1.04901076566127 360 0.967628069985835 0 0 0 -Inf LTS-021 chr18 43445723 43496508 50786 * EPG5 0.43 1 NA 1.0228605661154 121 0.417779092146449 4 4 0 -5.76515501794809 LTS-021 chr18 43496509 43669980 173472 * c(ATP5A1, EPG5, PSTPIP2) 0.399129337420087 11 0.137046773700873 0.988662265263676 259 0.425206402281315 4 2 2 -6.79348351627787 LTS-021 chr18 43669981 44101231 431251 * c(HAUS1, LOXHD1, C18orf25, RNF165, ATP5A1) 0 1 NA 0.976853102496092 219 0.49362944663081 3 3 0 -5.76609267575297 LTS-021 chr18 44101232 44601624 500393 * c(TCEB3CL2, LOXHD1, TCEB3C, ST8SIA5, TCEB3B, KATNAL2, PIAS2) 0.0194420312210989 14 0.122151140391325 0.890015029174721 504 0.71667033589049 10 10 0 -7.53774700490793 LTS-021 chr18 44601625 44610718 9094 * KATNAL2 0.5 1 NA 0.926508148420626 11 0.23700264670559 3 3 0 -5.76442680889742 LTS-021 chr18 44610719 48723426 4112708 * c(SNORD58C, MIR1539, MIR4320, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, SKA1, CFAP53, SNORD58B, SNORD58A, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, C18orf32, IER3IP1, MEX3C, DYM, ELAC1, MAPK4, RPL17, SKOR2, SCARNA17, KATNAL2, MRO, HDHD2, LIPG, CTIF) 0.27205632573187 56 0.223883659925905 1.01104564310633 2196 0.551449558223473 3 3 0 -6.77935595002389 LTS-021 chr18 48723427 48918487 195061 * c(LINC01630, MEX3C) NA 0 NA 0.739 1 NA NA NA NA NA LTS-021 chr18 48918488 50942653 2024166 * c(LINC01630, DCC) 0.35705922181359 6 0.184483874634072 0.690540524676684 142 0.317988692190152 1 1 0 -6.82797254935754 LTS-021 chr18 50942654 51060152 117499 * DCC 0 1 NA 0.76399712199487 123 0.414730437753167 2 2 0 -5.76472722507211 LTS-021 chr18 51060153 54359066 3298914 * c(LINC01539, MIR4529, POLI, STARD6, C18orf54, DCC, WDR7, DYNAP, RAB27B, SNORA37, TCF4, CCDC68, MBD2, TXNL1) 0.0393556938331595 8 0.0834386001800126 0.868625449819823 947 0.431532783689056 4 4 0 -9.33182668019883 LTS-021 chr18 54359067 54361816 2750 * WDR7 NA 0 NA 0.666 1 NA NA NA NA NA LTS-021 chr18 54361817 55143873 782057 * c(LINC-ROR, WDR7, BOD1L2, ST8SIA3, ONECUT2) 0.047670951780534 6 0.0999928330765094 0.565143023565393 279 0.341973316060853 3 3 0 -9.53927675788144 LTS-021 chr18 55143874 55145547 1674 * ONECUT2 0.318 1 NA 0.628190715447235 35 0.192696923176476 1 1 0 -5.76441132013529 LTS-021 chr18 55145548 61271839 6126292 * c(LOC100505549, MIR3591, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, PIGN, KDSR, CDH20, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TNFRSF11A, SERPINB12, SEC11C, ONECUT2, VPS4B) 0.162961669756388 72 0.141347713304241 0.664280425031579 3417 0.458148030392025 1 1 0 -7.62085754327318 LTS-021 chr18 61271840 61304514 32675 * SERPINB4 NA 0 NA 0.167 1 NA NA NA NA NA LTS-021 chr18 61304515 61323303 18789 * c(SERPINB3, SERPINB4) 0.228357579140154 5 0.145721309354535 0.244789437599248 73 0.156421054922716 0 0 0 -7.37487939675282 LTS-021 chr18 61323304 61323351 48 * c(SERPINB3, SERPINB4) 0 1 NA 2.001 1 NA NA NA NA NA LTS-021 chr18 61323352 63548926 2225575 * c(CDH7, LINC00305, HMSD, LOC284294, LINC01538, SERPINB2, SERPINB8, SERPINB10, SERPINB3, SERPINB4, SERPINB7, SERPINB11) 0.149271728362021 14 0.162611787415899 0.476388714743034 476 0.25498893618409 0 0 0 -7.58821608275442 LTS-021 chr18 63548927 71807489 8258563 * c(LINC01541, LOC100505817, MIR5011, CD226, CBLN2, FBXO15, DOK6, RTTN, CDH19, LOC400655, TMX3, LOC643542, CCDC102B, NETO1, DSEL, SOCS6) 0.104407233470272 16 0.186557486671892 0.601917613650518 1305 0.385431636142131 1 1 0 -7.66420994934488 LTS-021 chr18 71807490 71807495 6 * FBXO15 NA 0 NA 0.678 1 NA NA NA NA NA LTS-021 chr18 71807496 77920454 6112959 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, PARD6G, CNDP1, CTDP1, ZNF516) 0.163708805618006 57 0.140908458259334 0.724448707264002 2459 0.410266417464805 2 2 0 -7.38803092577634 LTS-021 chr18 77920455 78005362 84908 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.68860516109661 31 0.266515625235414 1 NA NA -5.76961216979046 LTS-021 chr19 107416 327998 220583 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.213 1 NA 0.659130103313865 93 0.353737967695894 1 1 0 -5.76622723916759 LTS-021 chr19 327999 1277275 949277 * c(MED16, MIR3187, MIR4745, FSTL3, ABCA7, CIRBP, GRIN3B, MISP, CNN2, C2CD4C, CIRBP-AS1, CFD, ARID3A, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, FGF22, ODF3L2, GPX4, GZMM, PRSS57, PALM, THEG, ATP5D, POLR2E, POLRMT, MIER2, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, STK11, BSG, PLPPR3, MADCAM1, KISS1R, MIDN, R3HDM4, TMEM259, TPGS1, CDC34) 0.24662233442795 103 0.0982220809898894 0.84950022418547 2285 0.462341620550025 3 3 0 -6.76939827952362 LTS-021 chr19 1277276 1278861 1586 * C19orf24 0.208 1 NA 1.05850464035697 5 0.217343046817698 4 4 0 -5.76442956929606 LTS-021 chr19 1278862 8807832 7528971 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4999, EBI3, PLIN3, APC2, CLEC4M, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, EVI5L, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, PLK5, NA NA NA NA NA NA NA NA NA LTS-021 ZNF358, CSNK1G2, TICAM1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, EFNA2, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, FUT3, FUT5, FUT6, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, MKNK2, UHRF1, GTF2F1, SLC39A3, CD209, ADGRE4P, ADAMTSL5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, ANGPTL4, MARCH2, CD320, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 SHD, MCOLN1, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STXBP2, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, CREB3L3, HDGFRP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, DPP9, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70) 0.175570824539849 330 0.139579458540234 0.78364936100218 12770 0.498224200200379 2 2 0 -7.17649355519771 LTS-021 NA NA NA NA LTS-021 chr19 8807833 9406374 598542 * c(OR7D4, OR7G1, OR1M1, ZNF558, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF699, OR7G2, OR7G3, ZNF317, MBD3L1, MUC16) 0.169909240073103 78 0.149829197904776 0.512365922029925 1532 0.392629127087724 1 1 0 -7.54656323320163 LTS-021 chr19 9406375 9406577 203 * ZNF699 NA 0 NA 1.123 1 NA NA NA NA NA LTS-021 chr19 9406578 10200810 794233 * c(ZNF559-ZNF177, ZNF266, ZNF560, ZNF846, ZNF561-AS1, ZNF699, C3P1, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.159610633469437 27 0.145283287470492 0.620917278159868 1118 0.419124869265767 2 2 0 -7.39396001118045 LTS-021 chr19 10200811 10201916 1106 * C19orf66 NA 0 NA 2.115 1 NA NA NA NA NA LTS-021 chr19 10201917 11725727 1523811 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, NA NA NA NA NA NA NA NA NA LTS-021 PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.185854536515492 69 0.149055135784837 0.822315499552694 3644 0.489026610921248 3 3 0 -6.9413846530544 LTS-021 NA NA NA NA LTS-021 chr19 11725728 11727481 1754 * ZNF627 NA 0 NA 0.633 1 NA NA NA NA NA LTS-021 chr19 11727482 12740347 1012866 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.149334390598266 41 0.137447515482075 0.556646941493674 1721 0.620373804998291 3 3 0 -7.49706021480962 LTS-021 chr19 12740348 12740567 220 * ZNF791 NA 0 NA 1.396 1 NA NA NA NA NA LTS-021 chr19 12740568 14693897 1953330 * c(LOC100507373, DDX39A, RNASEH2A, KLF1, GIPC1, NACC1, MISP3, RLN3, ZNF791, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, SYCE2, GCDH, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, NA NA NA NA NA NA NA NA NA LTS-021 PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.169842082326457 42 0.1409197677843 0.799231617415753 3463 0.473656655273177 3 3 0 -7.09758135813782 LTS-021 NA NA NA NA LTS-021 chr19 14693898 15227165 533268 * c(ILVBL, OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.186458959215905 18 0.175891863690218 0.551030507137265 750 0.313663432012897 1 1 0 -7.23688616097331 LTS-021 chr19 15227166 15590521 363356 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3) 0.163109591683067 15 0.171392531925986 0.785569323261642 878 0.431968120200053 4 4 0 -6.93805849506278 LTS-021 chr19 15590522 15729056 138535 * c(CYP4F8, CYP4F22) 0.426 1 NA 0.77442194309543 66 0.435515216950917 2 2 0 -5.76449927221166 LTS-021 chr19 15729057 16146770 417714 * c(CYP4F8, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.333625680317708 39 0.185653468931544 0.744504241484995 492 0.436982289512599 2 1 1 -6.74673726617143 LTS-021 chr19 16146771 16631776 485006 * c(KLF2, CHERP, CIB3, CALR3, LINC00905, FAM32A, RAB8A, EPS15L1, TPM4, C19orf44, HSH2D, AP1M1, MED26) 0.304283190948321 17 0.216153455157373 1.14956299576319 550 0.628964363756781 5 4 1 -6.73786615931684 LTS-021 chr19 16631777 16632353 577 * c(CHERP, C19orf44, MED26) 0 1 NA 0.939258408525381 3 2.28104939300606 3 3 0 -5.76441013467271 LTS-021 chr19 16632354 17270234 637881 * c(CHERP, SIN3B, CPAMD8, NWD1, MYO9B, TMEM38A, SMIM7, SLC35E1, F2RL3, HAUS8, MED26) 0.0837446100524481 13 0.182718888754535 1.12584205281438 1013 0.647151572769381 7 7 0 -6.93714804418198 LTS-021 chr19 17270235 17273893 3659 * MYO9B 0.488 1 NA 1.11237933884014 7 0.228049597779998 4 4 0 -5.76442469389387 LTS-021 chr19 17273894 17366278 92385 * c(NR2F6, MYO9B, USE1, OCEL1, USHBP1) 0.425546005425023 15 0.041653102554083 1.24961246527607 313 0.628049522482964 7 4 3 -8.0137957754718 LTS-021 chr19 17366279 17379737 13459 * c(BABAM1, USHBP1) 0 1 NA 1.22326525669795 53 0.747465600317148 5 5 0 -5.7644146545422 LTS-021 chr19 17379738 17932138 552401 * c(TMEM221, B3GNT3, NXNL1, ANKLE1, FAM129C, UNC13A, FCHO1, PGLS, BABAM1, INSL3, SLC27A1, MAP1S, ANO8, MRPL34, BST2, DDA1, ABHD8, COLGALT1, PLVAP, GTPBP3, MVB12A) 0.284939442701883 32 0.213119750904993 1.24050716190771 1408 0.660957916581977 5 4 1 -6.73989417739998 LTS-021 chr19 17932139 17946799 14661 * c(INSL3, JAK3) 0 1 NA 1.25717198271128 69 0.680192109666715 5 5 0 -5.76441190751422 LTS-021 chr19 17946800 18112384 165585 * c(CCDC124, SNORA68, ARRDC2, JAK3, KCNN1, RPL18A, SLC5A5) 0.102806942542896 10 0.200183499153485 1.24670219940972 266 0.613111540378107 8 8 0 -6.79116510138954 LTS-021 chr19 18112385 18119399 7015 * ARRDC2 0.5 1 NA 1.22178902376533 9 0.312342804907969 5 5 0 -5.76442553050291 LTS-021 chr19 18119400 18562438 443039 * c(MIR3188, MIR3189, IFI30, LRRC25, SSBP4, MAST3, LSM4, ARRDC2, IL12RB1, JUND, PDE4C, ISYNA1, PIK3R2, PGPEP1, RAB3A, LOC729966, KIAA1683, ELL, MPV17L2, GDF15) 0.400188488843556 37 0.146432844942923 1.15493311773019 1047 0.646608093927117 4 2 2 -6.78552350695607 LTS-021 chr19 18562439 18584020 21582 * ELL 0 1 NA 1.27011103510814 39 0.802866234364979 5 5 0 -5.76441808667748 LTS-021 chr19 18584021 19014158 430138 * c(CERS1, COPE, COMP, CRTC1, FKBP8, TMEM59L, GDF1, C19orf60, KLHL26, UPF1, UBA52, KXD1, ELL, CRLF1) 0.163405863746959 10 0.208982827577345 1.16261702672035 648 0.618336968408458 5 5 0 -6.75520655920211 LTS-021 chr19 19014159 19014248 90 * COPE 0.384 1 NA 0.994574101102033 3 0.082002032495136 3 3 0 -5.76443665549913 LTS-021 chr19 19014249 19105773 91525 * c(SUGP2, COPE, DDX49, HOMER3) 0.410927756015381 11 0.141338214609818 1.24830020870311 173 0.589676719242697 5 3 2 -6.81881135579842 LTS-021 chr19 19105774 19112492 6719 * SUGP2 0 1 NA 1.0501181824386 11 0.340842325583386 4 4 0 -5.76446297429344 LTS-021 chr19 19112493 19309127 196635 * c(MEF2B, SUGP2, SLC25A42, BORCS8-MEF2B, TMEM161A, BORCS8, RFXANK, ARMC6) 0.193954247699749 9 0.216858696953672 1.10238702276663 389 0.609573642964677 5 5 0 -6.73830488911872 LTS-021 chr19 19309128 19946126 636999 * c(NR2C2AP, NCAN, CILP2, MAU2, LINC00663, YJEFN3, HAPLN4, ZNF506, NDUFA13, GMIP, TM6SF2, GATAD2A, ATP13A1, SUGP1, ZNF14, PBX4, TSSK6, RFXANK, LPAR2, ZNF101) 0.118919369444988 18 0.213965698796414 1.01484709515456 1359 0.5768082659468 5 5 0 -6.86699251440936 LTS-021 chr19 19946127 20727463 781337 * c(ZNF737, MIR1270, ZNF253, ZNF826P, ZNF90, ZNF93, ZNF486, ZNF682) 0.416 1 NA 0.908232828713175 233 0.50467893995394 3 3 0 -5.76641683627799 LTS-021 chr19 20727464 21608153 880690 * c(ZNF737, ZNF738, ZNF714, ZNF431, ZNF626, ZNF493, ZNF708, ZNF85, ZNF430) 0.440702371591871 21 0.0483917053104883 0.982451582395906 336 0.744634098741952 4 2 2 -8.13637178696852 LTS-021 chr19 21608154 21608311 158 * ZNF493 0.24 1 NA 0.504368797981807 3 0.0994535067255047 0 0 0 -5.76443512513189 LTS-021 chr19 21608312 24345092 2736781 * c(HAVCR1P1, ZNF730, ZNF729, ZNF257, ZNF98, ZNF681, ZNF676, ZNF100, ZNF675, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF726, ZNF43, ZNF91, ZNF99, ZNF208, ZNF254) 0.297824801941 37 0.189857248412524 0.895929319016451 883 0.636846072654022 3 3 0 -6.76649562136829 LTS-021 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.451911206818481 3 0.0167431578064991 0 NA NA -5.7646158985865 LTS-021 chr19 28247625 30191355 1943731 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12) 0 1 NA 0.925874351335195 133 0.340347761014948 3 3 0 -5.76632314728181 LTS-021 chr19 30191356 32968531 2777176 * c(THEG5, DPY19L3, ZNF507, LOC400684, TSHZ3, C19orf12, URI1, CCNE1, NA, ZNF536) 0.0392016971244306 11 0.136283127749149 0.870148539140519 583 0.487449313462246 3 3 0 -8.03206997433001 LTS-021 chr19 32968532 33072118 103587 * c(DPY19L3, PDCD5) 0.326 1 NA 0.84202501480968 21 0.343209626349623 2 2 0 -5.76695258938113 LTS-021 chr19 33072119 33882222 810104 * c(CEBPA, CEBPG, SLC7A9, WDR88, RGS9BP, NUDT19, LRP3, PEPD, GPATCH1, SLC7A10, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12) 0.328941851038084 31 0.183791700703029 1.01121778054873 982 0.578318652637891 4 3 1 -6.74217351527448 LTS-021 chr19 33882223 33904568 22346 * PEPD 0 1 NA 1.02321300378623 15 1.04449234878321 4 4 0 -5.76446202342019 LTS-021 chr19 33904569 34929653 1025085 * c(UBA2, LSM14A, GPI, PEPD, CHST8, KCTD15, PDCD2L, KIAA0355) 0.073327797860667 11 0.185306772677093 0.993312623905549 513 0.517966350582398 5 5 0 -7.11852717616257 LTS-021 chr19 34929654 34959979 30326 * UBA2 0.364 1 NA 1.04526330612633 55 0.421116878775033 4 4 0 -5.76460569119079 LTS-021 chr19 34959980 35610283 650304 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, WTIP, ZNF792, ZNF599, SCGB2B2, HPN, ZNF181, LOC400685, FXYD3, ZNF302, GRAMD1A, SCN1B, SCGB1B2P, ZNF30) 0.267083338549859 37 0.211734453925144 0.936154304762504 710 0.57656327085591 3 3 0 -6.73385895543891 LTS-021 chr19 35610284 35612159 1876 * FXYD3 0.397 1 NA 1.45134610551271 5 0.413544072621045 6 6 0 -5.76441926451108 LTS-021 chr19 35612160 35832817 220658 * c(FAM187B, LGI4, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, HAMP, USF2, CD22) 0.443752760858926 24 0.101053580277774 1.03723813954654 521 0.525317107419046 4 2 2 -7.14208922857212 LTS-021 chr19 35832818 35863805 30988 * c(MIR5196, FFAR1, FFAR3, CD22) 0.439429559625355 3 0.0609289203361863 0.647060811762082 132 0.413708458998554 0 0 0 -7.65909945475123 LTS-021 chr19 35863806 35863809 4 * character(0) 0.302 1 NA 1.302 1 NA NA NA NA NA LTS-021 chr19 35863810 36017598 153789 * c(LINC01531, FFAR2, SBSN, KRTDAP, DMKN) 0.430406628205617 7 0.0443986271774037 1.00197714911557 189 0.437013685003494 4 2 2 -8.02970354831219 LTS-021 chr19 36017599 36033394 15796 * c(TMEM147-AS1, GAPDHS, SBSN) 0 1 NA 0.872039011433979 59 0.519056454127675 3 3 0 -5.76460114485838 LTS-021 chr19 36033395 36592140 558746 * c(TMEM147-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, ARHGAP33, HSPB6, COX6B1, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, GAPDHS, ZBTB32, WDR62, APLP1, NPHS1, ATP4A, PSENEN, LIN37, PRODH2, SDHAF1, TYROBP, RBM42, LRFN3, IGFLR1, KIRREL2, NFKBID, ALKBH6, KMT2B) 0.0733392650753131 17 0.179903466761875 1.03833943332034 1901 0.56317894796355 6 6 0 -7.02918426682718 LTS-021 chr19 36592141 36595436 3296 * WDR62 0.474 1 NA 0.782022119689606 47 0.438937449053181 2 2 0 -5.76441034206691 LTS-021 chr19 36595437 36643791 48355 * c(TBCB, COX7A1, WDR62, POLR2I, OVOL3, CAPNS1) NA 0 NA 1.19094927615303 171 0.58079816863821 5 NA NA -5.76458011892907 LTS-021 chr19 36643792 36673361 29570 * ZNF565 NA 0 NA 0.711 1 NA NA NA NA NA LTS-021 chr19 36673362 37210805 537444 * c(LOC100134317, LINC00665, ZNF565, ZNF567, ZFP82, ZNF260, ZFP14, ZNF529, LOC644189, LOC728752, ZNF146, ZNF382, ZNF566, ZNF461) 0.3177137724698 26 0.190247615976168 0.848637793902648 648 0.487011866223956 2 2 0 -6.74625561896712 LTS-021 chr19 37210806 37369051 158246 * c(ZNF567, ZNF345, ZNF790-AS1, ZNF850, ZNF790) 0 1 NA 0.75091904915919 159 0.293903729877849 2 2 0 -5.76664318491048 LTS-021 chr19 37369052 37642420 273369 * c(ZNF420, ZNF585A, ZNF345, ZNF829, ZNF568) 0.151229148108898 10 0.211055574566406 0.88602919565272 358 0.703117234991298 5 5 0 -6.80392204643174 LTS-021 chr19 37642421 37677661 35241 * c(ZNF585A, ZNF585B) 0.263254580882546 3 0.229090229676722 0.43934556469565 106 0.272217387926099 0 0 0 -6.8360930363302 LTS-021 chr19 37677662 37677677 16 * ZNF585B NA 0 NA 0.62 1 NA NA NA NA NA LTS-021 chr19 37677678 38388988 711311 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.180717047593734 31 0.227380421131588 0.78827273154647 974 0.54090597975111 3 3 0 -6.84795146759593 LTS-021 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 2.473 1 NA NA NA NA NA LTS-021 chr19 38571875 39760191 1188317 * c(IFNL4, PAK4, SPINT2, MAP4K1, FBXO17, RASGRP4, RINL, FBXO27, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, HNRNPL, NCCRP1, SYCN, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, SARS2, PSMD8, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, LGALS7B, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A) 0.191880177926144 86 0.217916172590136 1.09688532538728 2606 0.67072927848166 4 4 0 -6.7481613182283 LTS-021 chr19 39760192 39787537 27346 * c(IFNL2, IFNL1) 0 1 NA 1.0055905458124 24 0.609239559270169 3 3 0 -5.76461939128747 LTS-021 chr19 39787538 40384193 596656 * c(LOC100129935, MIR4530, DLL3, CLC, EID2B, LGALS16, EID2, FBL, IFNL1, LGALS13, LEUTX, SELENOV, LGALS17A, PAF1, SAMD4B, MED29, LGALS14, LRFN1, RPS16, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.102536405065239 13 0.162277263522683 0.978880721796986 1160 0.575594269237714 6 6 0 -7.00119624926337 LTS-021 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.15 1 NA NA NA NA NA LTS-021 chr19 40389650 40406034 16385 * FCGBP NA 0 NA 0.342305150785821 40 0.867407654140508 0 NA NA -5.76588814729957 LTS-021 chr19 40406035 40540452 134418 * c(ZNF780B, ZNF546, PSMC4, FCGBP) 0 8 0 0.778362004948468 358 0.592151323167856 0 0 0 -Inf LTS-021 chr19 40540453 40728417 187965 * c(TTC9B, ZNF780B, ZNF780A, MAP3K10, CNTD2) 0.47 1 NA 0.792588246807518 297 0.419222987181241 2 2 0 -5.76446124843723 LTS-021 chr19 40728418 40902990 174573 * c(C19orf47, HIPK4, AKT2, PLD3, PRX, MIR641, CNTD2) 0.278099394339224 9 0.231372955300408 0.864342577704067 467 0.460706084849191 3 3 0 -6.7403692927272 LTS-021 chr19 40902991 40903010 20 * PRX 0 1 NA 3.335 1 NA NA NA NA NA LTS-021 chr19 40903011 41962394 1059384 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, TGFB1, COQ8B, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.258032504544181 43 0.215741419091018 1.11621108383826 2005 0.575970895343995 4 4 0 -6.7467541167101 LTS-021 chr19 41962395 42026804 64410 * PCAT19 NA 0 NA 0.369 1 NA NA NA NA NA LTS-021 chr19 42026805 42213782 186978 * c(CEACAM5, CEACAM7, CEACAM4, CEACAM21) 0.195992830273627 11 0.232874214974522 0.630808944290319 179 0.527141209733868 3 3 0 -6.84011212607754 LTS-021 chr19 42213783 42219191 5409 * CEACAM5 0 1 NA 0.566473133629538 11 1.10067509862233 1 1 0 -5.76444256407958 LTS-021 chr19 42219192 42270239 51048 * c(CEACAM5, CEACAM6) NA 0 NA 0.62661860218992 70 0.218614024997176 1 NA NA -5.76446352989598 LTS-021 chr19 42270240 43022978 752739 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM3, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, CEACAM6, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.0270517268811739 24 0.114011369570339 1.04604209038029 1830 0.732908164512494 10 10 0 -7.5087073055774 LTS-021 chr19 43022979 43433768 410790 * c(LOC100289650, LIPE-AS1, CEACAM8, PSG8, PSG1, PSG3, PSG6, PSG7, CEACAM1, PSG10P) 0 6 0 0.610801729354464 158 0.498844934670331 0 0 0 -Inf LTS-021 chr19 43433769 43519362 85594 * c(PSG3, PSG6, PSG7, PSG11) 0.493 1 NA 0.487805294265275 17 0.360543727461406 0 0 0 -5.76453578031411 LTS-021 chr19 43519363 43530661 11299 * c(PSG6, PSG11) 0.456 1 NA 0.640213499484249 10 0.29047824550405 1 1 0 -5.76442235985896 LTS-021 chr19 43530662 43568698 38037 * c(PSG2, PSG6) NA 0 NA 0.247 1 NA NA NA NA NA LTS-021 chr19 43568699 43857908 289210 * c(PRG1, LOC284344, PSG2, PSG4, PSG5, PSG6, PSG9, CD177) 0 1 NA 0.236093243211566 61 0.268143639632585 0 0 0 -6.78042982421278 LTS-021 chr19 43857909 43920751 62843 * c(CD177, TEX101) NA 0 NA 0.678530017667848 75 0.541273375834603 1 NA NA -5.76504904657362 LTS-021 chr19 43920752 43922052 1301 * TEX101 NA 0 NA 1.012 1 NA NA NA NA NA LTS-021 chr19 43922053 44335631 413579 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, ZNF283, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF576, TEX101) 0.324560583438255 25 0.195479325420021 1.10595923816298 789 0.526823155320503 4 3 1 -6.73479189186591 LTS-021 chr19 44335632 44339578 3947 * ZNF283 NA 0 NA 0.62 1 NA NA NA NA NA LTS-021 chr19 44339579 44680115 340537 * c(LOC100379224, LOC100505715, ZNF234, ZNF283, ZNF404, ZNF284, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF225, ZNF226, ZNF230) 0.369919890859908 17 0.152325285645748 0.727907018031227 575 0.355148988410633 2 1 1 -6.74638932229384 LTS-021 chr19 44680116 44680807 692 * ZNF226 0 1 NA 0.818340619224744 15 0.738415891331862 2 2 0 -5.7644114065934 LTS-021 chr19 44680808 44983545 302738 * c(ZNF285, ZNF233, ZNF180, ZNF226, ZNF227, ZNF112, ZNF229, ZNF235) 0.0948290569388902 10 0.1933517519962 0.796384238132626 438 0.44110880203263 5 5 0 -7.08847416513102 LTS-021 chr19 44983546 45117213 133668 * c(CEACAM20, IGSF23, CEACAM22P, ZNF180) 0.200840893744112 4 0.247839329674153 1.01902522389687 90 0.553157707451825 4 4 0 -6.7407009259693 LTS-021 chr19 45117214 45130859 13646 * IGSF23 0.436 1 NA 1.12678040475532 25 0.440751657209968 4 4 0 -5.76445178459109 LTS-021 chr19 45130860 45506772 375913 * c(APOC4-APOC2, MIR4531, TOMM40, CLPTM1, IGSF23, CBLC, APOC1, APOC1P1, APOC2, APOE, CEACAM16, BCAM, CEACAM19, PVR, NECTIN2, RELB, BCL3) 0.325299126068623 17 0.198168767201387 1.16146996240425 719 0.607246945003922 4 3 1 -6.73671369890469 LTS-021 chr19 45506773 45555995 49223 * c(CLASRP, RELB) 0 1 NA 1.249575565752 92 0.860960996534541 5 5 0 -5.76441064981926 LTS-021 chr19 45555996 45857996 302001 * c(CLASRP, CKM, KLC3, ZNF296, ERCC2, PPP1R37, NKPD1, BLOC1S3, MARK4, TRAPPC6A, GEMIN7, EXOC3L2) 0.126421245213987 11 0.197658474969511 1.00203426777505 589 0.522315224091156 5 5 0 -6.84766651030754 LTS-021 chr19 45857997 45865002 7006 * ERCC2 0.453 1 NA 0.98511111392187 29 0.256435085746803 3 3 0 -5.76455880199581 LTS-021 chr19 45865003 48284026 2419024 * c(SNAR-E, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, PPP5D1, DACT3-AS1, SAE1, RNU6-66P, PPP1R13L, CD3EAP, KPTN, AP2S1, PPM1N, DACT3, SIX5, IGFL2, DMPK, DMWD, ERCC1, ERCC2, ZC3H4, FBXO46, FOSB, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, GPR4, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, FOXA3, MYPOP, NANOS2, IGFL1, BHMG1, IGFL3, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, NA NA NA NA NA NA NA NA NA LTS-021 PNMAL1, PPP5C, MEIS3, PTGIR, PNMAL2, RTN2, SELENOW, HIF3A, SLC1A5, SLC8A2, SNRPD2, SNORD23, MIR642A, C5AR1, CCDC61, VASP, MIR769, FKRP, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, ZNF541, NAPA, PGLYRP1, LOC93429, GNG8, DHX34) 0.363652105646068 121 0.168509710259648 1.11753354808124 3981 0.563229938638813 4 2 2 -6.7362824793506 LTS-021 NA NA NA NA LTS-021 chr19 48284027 48593644 309618 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SELENOW, SULT2A1, PLA2G4C) 0.293465900642362 20 0.19038503921762 0.847754484272993 371 0.850577923861392 2 2 0 -6.73525519929135 LTS-021 chr19 48593645 48598721 5077 * PLA2G4C NA 0 NA 1.225 1 NA NA NA NA NA LTS-021 chr19 48598722 48601512 2791 * PLA2G4C 0.404821257428268 2 0.073539105243401 1.20669337704369 10 0.290198705870459 7 4 3 -6.97015007407602 LTS-021 chr19 48601513 48603086 1574 * PLA2G4C 0 1 NA 1.08362436710017 5 0.441463815051698 4 4 0 -5.76441041555427 LTS-021 chr19 48603087 49244623 641537 * c(CARD8-AS1, KDELR1, LMTK3, NTN5, DBP, ZNF114, SPACA4, EMP3, CARD8, SYNGR4, FUT2, MAMSTR, IZUMO1, GRIN2D, KCNJ14, LIG1, FAM83E, RASIP1, TMEM143, SPHK2, RPL18, SEC1P, SULT2B1, CA11, GRWD1, PLA2G4C, CYTH2, CCDC114) 0.143657072086548 27 0.214574321858743 1.14463854138874 1571 0.630533338889576 5 5 0 -6.7819227211366 LTS-021 chr19 49244624 49259529 14906 * c(FUT1, FGF21, IZUMO1) 0.409 1 NA 1.08847282265747 67 0.476258213603108 4 4 0 -5.76441052631565 LTS-021 chr19 49259530 49699866 440337 * c(SNAR-G1, SNAR-G2, LOC101059948, CGB3, RUVBL2, CGB1, CGB2, PPP1R15A, FTL, FGF21, DHDH, GYS1, HRC, KCNA7, LHB, NTF4, NUCB1, HSD17B14, TRPM4, C19orf73, PLEKHA4, BAX, BCAT2, LIN7B, SNRNP70, TULP2, PPFIA3, CGB5, CGB7, CGB8) 0.351003576033157 52 0.172153361247577 1.15785252020065 1206 0.586858264292829 4 2 2 -6.73652860660288 LTS-021 chr19 49699867 49793514 93648 * c(SLC6A16, TRPM4) 0 1 NA 1.27129070096252 57 0.466501684943514 5 5 0 -5.76452210003617 LTS-021 chr19 49793515 50242951 449437 * c(MIR4324, GFY, MIR5088, PTH2, CPT1C, ALDH16A1, CCDC155, ADM5, FCGRT, FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, SLC6A16, PRMT1, IRF3, MIR150, NOSIP, PIH1D1, PRRG2, SLC17A7, RCN3, PRR12, SCAF1, RPS11, RRAS, BCL2L12, SNORD35B, TEAD2, CD37) 0.213245604756775 34 0.220017111633992 1.15848491882165 1394 1.00635544214631 4 4 0 -6.73613657666642 LTS-021 chr19 50242952 50304336 61385 * c(AP2A1, TSKS) 0.434 1 NA 1.19180252236054 133 0.652319107789183 5 5 0 -5.76457573287564 LTS-021 chr19 50304337 50462244 157908 * c(PTOV1-AS1, MIR4749, MIR4750, MIR4751, PNKP, SIGLEC11, AP2A1, ATF5, NUP62, IL4I1, PTOV1, TBC1D17, FUZ, MED25, AKT1S1) 0.279015848095286 29 0.210449237996717 1.09886973156054 729 0.629794062155216 3 3 0 -6.74423650144094 LTS-021 chr19 50462245 50462270 26 * SIGLEC11 NA 0 NA 0.609 1 NA NA NA NA NA LTS-021 chr19 50462271 50474543 12273 * c(SIGLEC11, SIGLEC16) 0.350472756247941 2 0.0367695526217005 0.5531331244308 53 0.515834512762891 3 2 1 -6.74818618216837 LTS-021 chr19 50474544 50474557 14 * SIGLEC16 NA 0 NA 1.084 1 NA NA NA NA NA LTS-021 chr19 50474558 50771609 297052 * c(SNAR-B2, SNAR-D, IZUMO2, ZNF473, SIGLEC16, LOC400710, VRK3, MYH14) 0.346442921358247 15 0.194018948510068 1.02545512819284 333 0.623029513014705 4 2 2 -6.7367981360895 LTS-021 chr19 50771610 50775776 4167 * MYH14 0 1 NA 1.6574200934218 15 0.440824908552137 8 8 0 -5.76442028306568 LTS-021 chr19 50775777 51518765 742989 * c(SNAR-F, KLK8, FAM71E1, JOSD2, NAPSB, KLK5, EMC10, MGC45922, KLK9, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, MYBPC2, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, MYH14, SYT3, C19orf48, ACPT, LRRC4B, NAPSA, KLK4) 0.1806203782737 39 0.228535828331815 1.04964051256079 1526 0.606692063915194 4 4 0 -6.7589936595995 LTS-021 chr19 51518766 51519236 471 * KLK10 0.47 1 NA 1.62975227266981 5 0.611220336703549 8 8 0 -5.76441165795875 LTS-021 chr19 51519237 51607904 88668 * c(KLK11, KLK13, KLK14, KLK12, KLK10, CTU1) 0.46947807412666 5 0.0236579796263332 1.17377037986905 188 0.519992398741672 4 2 2 -11.8364149101815 LTS-021 chr19 51607905 51628192 20288 * c(SIGLEC9, CTU1) NA 0 NA 0.633 1 NA NA NA NA NA LTS-021 chr19 51628193 51850290 222098 * c(VSIG10L, ETFB, SIGLEC7, SIGLEC9, SIGLEC17P, SIGLECL1, IGLON5, CD33) 0.262031017658463 11 0.218525721390162 0.821687309211231 363 0.468190856843372 3 3 0 -6.74388760548634 LTS-021 chr19 51850291 51853636 3346 * ETFB 0 1 NA 1.68353578030886 3 0.984885949403957 8 8 0 -5.76441045560154 LTS-021 chr19 51853637 52033651 180015 * c(LOC100129083, CLDND2, C19orf84, ETFB, SIGLEC8, LIM2, NKG7, CEACAM18, SIGLEC10, SIGLEC12, SIGLEC6) 0.149146549970685 12 0.222997944684101 0.811470710252785 384 0.571198315507494 5 5 0 -6.82494851507037 LTS-021 chr19 52033652 52035059 1408 * SIGLEC6 0.454 1 NA 0.711427919708218 29 0.18446101087227 2 2 0 -5.76465380820575 LTS-021 chr19 52035060 52249702 214643 * c(SIGLEC14, SPACA6, FPR1, HAS1, MIRLET7E, MIR125A, MIR99B, LINC01530, ZNF175, SIGLEC5, SIGLEC6) 0.406188780539983 15 0.120773972282741 0.862121227873491 357 0.630051952872072 2 1 1 -6.83168090948414 LTS-021 chr19 52249703 52249756 54 * FPR1 0 1 NA 1.19455503209478 3 1.29701824710886 5 5 0 -5.76441016710452 LTS-021 chr19 52249757 52658620 408864 * c(ZNF836, FPR1, FPR2, FPR3, ZNF615, ZNF841, ZNF350, ZNF649, ZNF613, ZNF614, ZNF577, ZNF616, ZNF432) 0.155073225137281 17 0.210560893106679 0.840001035853168 569 0.445176012128126 4 4 0 -6.88524182568353 LTS-021 chr19 52658621 52659872 1252 * ZNF836 0.402 1 NA 0.832737446380495 23 0.125563425857387 2 2 0 -5.76457216451665 LTS-021 chr19 52659873 53116514 456642 * c(ZNF480, ZNF534, ZNF578, ZNF836, ZNF610, ZNF808, ZNF880, PPP2R1A, ZNF701, ZNF83, MIR643, ZNF137P, ZNF528, ZNF766) 0.382464683089991 22 0.163839035144954 0.831228929880882 679 0.531238454734751 2 1 1 -6.74999523134408 LTS-021 chr19 53116515 53209431 92917 * c(ZNF83, ZNF611) 0 1 NA 0.783281198769364 49 0.574002845817686 2 2 0 -5.76441154513062 LTS-021 chr19 53209432 53517424 307993 * c(ZNF816-ZNF321P, ZNF816, ERVV-1, ZNF600, ZNF320, ZNF321P, ZNF28, ZNF702P, ZNF611, ZNF468) 0.237504380722506 14 0.193201710910905 0.749763250112847 294 0.751105105889538 3 3 0 -6.75712651472421 LTS-021 chr19 53517425 53553608 36184 * c(ERVV-2, ERVV-1) 0 1 NA 0.352423697992112 49 0.447631494571118 0 0 0 -5.77462081796802 LTS-021 chr19 53553609 53553759 151 * ERVV-2 NA 0 NA 0.476 1 NA NA NA NA NA LTS-021 chr19 53553760 53667725 113966 * c(ERVV-2, ZNF415, ZNF665, ZNF347, ZNF160) 0.191174640583415 8 0.238882181061232 0.859857356628929 176 0.912643211017801 5 5 0 -6.74520569488065 LTS-021 chr19 53667726 53667804 79 * ZNF665 0.485 1 NA 1.09108698143427 3 0.237373826133661 4 4 0 -5.76441013512241 LTS-021 chr19 53667805 53741188 73384 * c(ZNF677, ZNF818P, ZNF665) 0.433254428844291 11 0.0549517143416919 0.795741744829986 108 0.380151965728735 2 1 1 -7.69886778331033 LTS-021 chr19 53741189 53770894 29706 * c(VN1R2, VN1R4, ZNF677) 0 1 NA 0.588244362980197 75 0.389929076480178 1 1 0 -5.76502322462413 LTS-021 chr19 53770895 54318244 547350 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, ZNF813, TPM3P9, ZNF525, LOC284379, VN1R4, ZNF761, MIR372, MIR373, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, NA NA NA NA NA NA NA NA NA LTS-021 MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, FAM90A27P, ZNF765, NLRP12, ZNF845) 0.240102545672028 14 0.206183490774921 0.751128275780765 855 0.618547848869477 3 3 0 -6.7805667477196 LTS-021 NA NA NA NA LTS-021 chr19 54318245 54327150 8906 * NLRP12 NA 0 NA 1.011 1 NA NA NA NA NA LTS-021 chr19 54327151 54327568 418 * NLRP12 0.377793348877508 2 0.0367695526217005 1.0545055352314 8 0.415504082840521 11 6 5 -6.90274935883054 LTS-021 chr19 54327569 54378778 51210 * c(NLRP12, MYADM) 0 1 NA 1.00427840030123 44 0.706621274279419 3 3 0 -5.76469048672035 LTS-021 chr19 54378779 54590368 211590 * c(MIR935, VSTM1, TARM1, PRKCG, CACNG8, CACNG7, CACNG6, MYADM) 0.0988466010270314 12 0.204321641862367 0.885344527931661 468 0.726193242457684 7 7 0 -6.86693469399148 LTS-021 chr19 54590369 54599229 8861 * OSCAR 0.471 1 NA 1.21096178899904 29 0.479811277555004 5 5 0 -5.76442797154265 LTS-021 chr19 54599230 54710673 111444 * c(OSCAR, TMC4, PRPF31, TFPT, NDUFA3, CNOT3, RPS9, TSEN34, MBOAT7, LENG1) 0.39619345865674 18 0.148274211615052 1.05096378663603 576 0.584821024977761 4 2 2 -6.77383685526024 LTS-021 chr19 54710674 54711032 359 * RPS9 0.31 1 NA 1.14316413485725 9 0.122455207230145 4 4 0 -5.76444027743039 LTS-021 chr19 54711033 54746590 35558 * c(LILRB3, RPS9, LILRA6) 0.20834201804908 10 0.153484744084442 0.955885563921515 138 0.738476874772089 5 5 0 -6.73726382219067 LTS-021 chr19 54746591 54926844 180254 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA4, LILRA5, LAIR1, TTYH1, LILRA6) 0.168159475780783 6 0.214604519989678 0.570864766499201 388 0.434599294574456 3 3 0 -6.97764275194561 LTS-021 chr19 54926845 54976702 49858 * c(LENG8, CDC42EP5, TTYH1, LENG9) 0.131 1 NA 0.912036368397951 290 0.458013263446486 3 3 0 -5.76452878312345 LTS-021 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.358 1 NA NA NA NA NA LTS-021 chr19 55009101 55385821 376721 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR2, LILRP2, KIR3DX1) 0.231101012122712 31 0.215386159837308 0.525489722953333 683 0.398172510334492 1 1 0 -6.9401087276792 LTS-021 chr19 55385822 55494881 109060 * c(RNU6-64P, NLRP7, FCAR, NLRP2, NCR1) 0.246696627258996 15 0.202736446320504 0.794303190385043 233 0.50761319560899 3 3 0 -6.74240964775901 LTS-021 chr19 55494882 55501447 6566 * NLRP2 0.409 1 NA 0.847445752169519 17 0.26030300499949 2 2 0 -5.76474455305787 LTS-021 chr19 55501448 55530027 28580 * c(GP6, NLRP2) 0.464202548085105 4 0.045040722315108 0.702256733488634 80 0.474981257291781 0 0 0 -8.98688483297715 LTS-021 chr19 55530028 55594996 64969 * c(RDH13, GP6, EPS8L1) 0.454193827339569 7 0.0313520713981131 1.08955908193473 151 0.392494445567481 4 2 2 -9.92839575316915 LTS-021 chr19 55594997 55658135 63139 * c(PPP1R12C, EPS8L1, TNNT1) 0 1 NA 1.13835088995394 173 0.521935013793356 4 4 0 -5.76465139640588 LTS-021 chr19 55658136 55944632 286497 * c(COX6B2, TMEM190, PPP6R1, HSPBP1, TMEM86B, UBE2S, TMEM150B, FAM71E2, DNAAF3, IL11, TMEM238, PTPRH, RPL28, SYT5, TNNI3, TNNT1, SHISA7, BRSK1, KMT5C) 0.0592471553490358 21 0.149128244586106 1.07942157674251 1004 0.64810980288224 10 10 0 -7.01206655490589 LTS-021 chr19 55944633 55992992 48360 * c(SHISA7, ISOC2, ZNF628) 0.5 1 NA 0.951180590031309 75 0.368032368337547 3 3 0 -5.76444733998612 LTS-021 chr19 55992993 56243518 250526 * c(SBK3, ZNF865, U2AF2, ZNF524, ZNF784, ZNF579, SSC5D, CCDC106, EPN1, NLRP9, ZNF580, ZNF581, NAT14, SBK2, FIZ1, ZNF628) 0.359386886745942 25 0.169751750113708 1.20169499765182 737 0.614675314534147 5 3 2 -6.73363906389656 LTS-021 chr19 56243519 56289787 46269 * c(NLRP9, RFPL4A, RFPL4AL1) 0.439056052242244 3 0.0391535439009038 0.420449153526937 111 0.288147668371408 0 0 0 -8.59578742627949 LTS-021 chr19 56289788 56562025 272238 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11) 0.328710748942157 23 0.191826069935031 0.622520759673569 454 0.349329747538193 1 1 0 -6.73683753029462 LTS-021 chr19 56562026 56564955 2930 * NLRP5 NA 0 NA 1.408 1 NA NA NA NA NA LTS-021 chr19 56564956 57323357 758402 * c(ZNF667-AS1, NLRP5, ZNF787, ZFP28, SMIM17, ZNF542P, ZNF582, ZNF583, ZIM2, ZSCAN5B, ZNF582-AS1, ZNF470, PEG3, ZNF444, ZNF471, ZNF71, ZNF667, ZSCAN5A, GALP, ZNF835) 0.348193167497418 31 0.184740614439965 0.822799741823905 839 0.596610477625629 2 1 1 -6.73730516661573 LTS-021 chr19 57323358 57324354 997 * c(PEG3-AS1, ZIM2, PEG3) NA 0 NA 0.919539295176082 20 0.245582894141137 3 NA NA -5.76441436088697 LTS-021 chr19 57324355 57325158 804 * c(PEG3-AS1, ZIM2, PEG3) 0 1 NA 0.65004243679551 19 0.507660469257538 1 1 0 -5.76441155582392 LTS-021 chr19 57325159 57647261 322103 * c(MIMT1, PEG3-AS1, ZIM3, ZIM2, PEG3, USP29) 0.0543169094009647 7 0.154209504987765 0.571905253755191 229 0.430282981390339 5 5 0 -7.8032310509429 LTS-021 chr19 57647262 57647360 99 * ZIM3 NA 0 NA 0.724 1 NA NA NA NA NA LTS-021 chr19 57647361 57678813 31453 * c(ZIM3, DUXA) 0 4 0 0.945484239541518 68 0.626133237587328 0 0 0 -Inf LTS-021 chr19 57678814 57703369 24556 * c(DUXA, ZNF264) 0.475 1 NA 1.36164162581165 7 0.241374437436152 6 6 0 -5.76458832893247 LTS-021 chr19 57703370 58016474 313105 * c(TRAPPC2B, ZNF460, ZNF543, ZNF548, ZNF547, ZNF773, ZNF749, ZNF805, ZNF772, VN1R1, ZNF304, AURKC, ZNF17, ZNF419, ZNF264) 0.370055257749022 13 0.173464435134151 0.8757831207047 691 1.12466897201477 2 1 1 -6.73791203561068 LTS-021 chr19 58016475 58058567 42093 * c(ZNF550, ZNF549, ZNF773) 0 1 NA 0.864997637257511 99 0.456099999613567 3 3 0 -5.76522233125788 LTS-021 chr19 58058568 58232919 174352 * c(ZNF211, ZNF550, ZSCAN4, ZIK1, ZNF776, ZNF530, ZNF416, ZNF134, ZNF154, ZNF671, ZNF551) 0.0801008815424922 9 0.205291933055777 0.925268324008174 437 0.512924530350583 7 7 0 -6.93434142168562 LTS-021 chr19 58232920 58258120 25201 * c(ZNF776, ZNF671) 0.379 1 NA 1.13924334888378 19 0.197269785879776 4 4 0 -5.76510976236992 LTS-021 chr19 58258121 59082605 824485 * c(A1BG, LOC100128398, MZF1-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF274, SLC27A5, ZNF837, C19orf18, ZNF418, ZNF417, ZNF497, ZNF584, FKBP1AP1, ZNF324, CHMP2A, ZNF544, ZNF776, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF586, ZNF446, RPS5, RNF225, ZSCAN18, ZNF814, ZNF8, MZF1, ZNF132, ZNF135, ZNF329, ZNF552, ZNF606, ZBTB45, ZNF587, UBE2M) 0.356024327647805 71 0.168611352909524 0.93418844403914 2028 0.536726230044302 3 2 1 -6.73311497625892 LTS-021 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.769803698732413 11 0.164456681226395 2 NA NA -5.76442281668802 LTS-021 chr20 68260 76962 8703 * DEFB125 0.084 1 NA 0.40837589400418 11 0.243969409408788 0 0 0 -5.76665197549202 LTS-021 chr20 76963 240050 163088 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) 0.220097928957663 6 0.134843242322335 0.369044129523798 95 0.423886400351716 3 3 0 -7.2238704727696 LTS-021 chr20 240051 240137 87 * DEFB132 NA 0 NA 0.681 1 NA NA NA NA NA LTS-021 chr20 240138 1149058 908921 * c(RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, CSNK2A1, RSPO4, DEFB132, ANGPT4, TRIB3, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1) 0.136541873261391 37 0.136360153973188 0.715100852941679 1220 0.414279428212639 3 3 0 -7.40986520033679 LTS-021 chr20 1149059 1161175 12117 * character(0) NA 0 NA 0.242 1 NA NA NA NA NA LTS-021 chr20 1161176 1165113 3938 * TMEM74B NA 0 NA 0.355994750779075 44 0.13699826390468 0 NA NA -5.77550401381002 LTS-021 chr20 1165114 3026852 1861739 * c(SNORD119, TMEM239, LOC100289473, MIR1292, SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, NOP56, TMC2, SIRPD, C20orf141, SIRPA, STK35, FKBP1A, SDCBP2, GNRH2, SIRPB2, IDH3B, TGM6, C20orf202, PDYN, TMEM74B, SIRPG, NSFL1C, CPXM1, EBF4, PTPRA, RAD21L1, VPS16, PCED1A, MRPS26, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, SNPH) 0.15907038977342 60 0.155676159596345 0.622901739217144 2022 0.349902529656181 1 1 0 -7.47605140820033 LTS-021 chr20 3026853 3026951 99 * MRPS26 NA 0 NA 0.592 1 NA NA NA NA NA LTS-021 chr20 3026952 5178582 2151631 * c(UBOX5-AS1, MIR103B2, PCNA-AS1, CENPB, RNF24, HSPA12B, ADRA1D, PRNT, UBOX5, PRND, SPEF1, C20orf194, TMEM230, ITPA, MIR103A2, OXT, PCNA, SMOX, C20orf27, AVP, AP5S1, PRNP, MAVS, FASTKD5, GFRA4, MRPS26, DDRGK1, SIGLEC1, LINC01433, PANK2, ADAM33, SLC4A11, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.16883979849325 78 0.151172020736246 0.724520852985991 3087 0.377554670789126 2 2 0 -7.21317107648189 LTS-021 chr20 5178583 5261090 82508 * character(0) NA 0 NA 0.491 1 NA NA NA NA NA LTS-021 chr20 5261091 5283383 22293 * PROKR2 0.261732439715502 2 0.00919238815542513 0.300345770509104 39 0.148519309031505 3 3 0 -7.47560662895111 LTS-021 chr20 5283384 5294557 11174 * PROKR2 NA 0 NA 0.577 1 NA NA NA NA NA LTS-021 chr20 5294558 20031320 14736763 * c(C20orf78, LOC100130264, SNAP25-AS1, LOC100270804, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, LINC00658, SEC23B, POLR3F, RBBP9, DSTN, CHGB, PROKR2, SLX4IP, MACROD2, BANF2, SCP2D1, ISM1, LINC00654, C20orf196, LRRN4, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, SNX5, LINC00652, LOC339593, LINC00493, LINC00851, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PLCB4, HAO1, RIN2, CRLS1, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, TMX4, GPCPD1, NA NA NA NA NA NA NA NA NA LTS-021 OTOR, PAK5, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, ANKEF1, LOC643406, BMP2, SNAP25, SNRPB2, SNORD17, ZNF133, NDUFAF5, SEL1L2, MKKS, MCM8, MGME1, DTD1) 0.188814273127254 147 0.150918663267253 0.677844795596107 5235 0.381200464199112 1 1 0 -7.58397643680427 LTS-021 NA NA NA NA LTS-021 chr20 20031321 20032973 1653 * CRNKL1 NA 0 NA 0.507 1 NA NA NA NA NA LTS-021 chr20 20032974 20512295 479322 * c(CFAP61, INSM1, CRNKL1, RALGAPA2) 0.0907694434448205 11 0.131310665633417 0.560435992982619 469 0.399613102597876 4 4 0 -8.02403472555658 LTS-021 chr20 20512296 20512394 99 * RALGAPA2 NA 0 NA 0.732 1 NA NA NA NA NA LTS-021 chr20 20512395 25002061 4489667 * c(LINC01432, CST8, CSTL1, CST9L, CST9, LINC00261, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, LOC284788, NXT1, FOXA2, FLJ33581, NKX2-2, PAX1, KIZ, APMAP, RALGAPA2, NAPB, GZF1, NKX2-4, SSTR4, THBD, SYNDIG1, ACSS1, CST7, GGTLC1) 0.129781928682842 36 0.210914734897364 0.948213607035279 1618 0.555756482603705 3 3 0 -6.95188929534805 LTS-021 chr20 25002062 25003705 1644 * ACSS1 0.458 1 NA 1.06571584857071 9 0.431467553820678 4 4 0 -5.76441325651966 LTS-021 chr20 25003706 25259006 255301 * c(LOC284798, VSX1, PYGB, ACSS1, ENTPD6) 0.420487565639503 14 0.127075148658553 0.993392986716499 326 0.398302861626665 4 2 2 -6.88542354978244 LTS-021 chr20 25259007 25270576 11570 * PYGB 0 1 NA 1.06067582666054 45 0.271152758019936 4 4 0 -5.76448964845127 LTS-021 chr20 25270577 25459831 189255 * c(NINL, ABHD12, PYGB, GINS1) 0.0215371145513191 11 0.109750129426306 1.01948851065843 331 0.608538401035719 15 15 0 -7.28160225491454 LTS-021 chr20 25459832 25469844 10013 * NINL 0.401 1 NA 1.64443112810377 15 0.758698208399474 8 8 0 -5.76442362689002 LTS-021 chr20 25469845 26188981 719137 * c(LOC100134868, NANP, NCOR1P1, NINL, ZNF337, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.275649472697954 24 0.129881823376015 0.854146809845788 343 0.589223286577431 3 3 0 -6.75363597029109 LTS-021 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.10952654582971 3 0.410496041393824 4 NA NA -5.76441016931561 LTS-021 chr20 29625845 29625852 8 * FRG1BP 0.199 1 NA 1.052 1 NA NA NA NA NA LTS-021 chr20 29625853 29633938 8086 * FRG1BP 0.411854428322208 13 0.0943056949635816 0.783213048193543 34 0.396632757804092 2 1 1 -6.92579965668205 LTS-021 chr20 29633939 29652099 18161 * c(MLLT10P1, FRG1BP) 0.232 1 NA 0.872755397255404 6 0.565573691042997 3 3 0 -5.764591006482 LTS-021 chr20 29652100 30065824 413725 * c(DEFB118, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1) 0.17224096754546 8 0.148673599827657 0.694825130072248 157 0.546033469273822 4 4 0 -6.97734460074973 LTS-021 chr20 30065825 30070047 4223 * REM1 NA 0 NA 1.347 1 NA NA NA NA NA LTS-021 chr20 30070048 30512874 442827 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, LINC00028, TTLL9, TPX2, FOXS1, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.1943761836556 10 0.22726871026753 1.15788566473712 601 0.578717292646982 5 5 0 -6.7376685423925 LTS-021 chr20 30512875 30513628 754 * TTLL9 NA 0 NA 0.547 1 NA NA NA NA NA LTS-021 chr20 30513629 30738693 225065 * c(CCM2L, TTLL9, HCK, XKR7, PDRG1, TM9SF4) 0.0715992814152822 7 0.183312769409475 0.945504986377052 383 0.555048874009486 7 7 0 -6.98510509052281 LTS-021 chr20 30738694 30746248 7555 * TM9SF4 0.42 1 NA 1.09623160887034 13 0.31600807357424 4 4 0 -5.76441084318303 LTS-021 chr20 30746249 31196471 450223 * c(TSPY26P, NOL4L, LOC149950, ASXL1, POFUT1, PLAGL2, KIF3B, TM9SF4) 0.317533748844256 23 0.202330717805253 0.984664855023202 904 0.580601417249628 4 3 1 -6.74590139696427 LTS-021 chr20 31196472 31238562 42091 * c(LOC149950, C20orf203) 0 1 NA 1.17596584559935 17 1.18580359014964 5 5 0 -5.76446872831853 LTS-021 chr20 31238563 31608118 369556 * c(SUN5, COMMD7, DNMT3B, MAPRE1, C20orf203, BPIFB2) 0.125142739014633 21 0.219464554031375 1.00936593318348 592 0.737256524070019 6 6 0 -6.81335927181878 LTS-021 chr20 31608119 31608250 132 * BPIFB2 0.456 1 NA 0.781722256453829 3 0.461515980221704 2 2 0 -5.76441014343747 LTS-021 chr20 31608251 31672812 64562 * c(BPIFB6, BPIFB4, BPIFB3, BPIFB2) 0.257865931039147 12 0.225511069405123 0.768778383660406 222 0.580332785321182 3 3 0 -6.73763690607306 LTS-021 chr20 31672813 31672831 19 * BPIFB4 0 1 NA 3.629 1 NA NA NA NA NA LTS-021 chr20 31672832 31973594 300763 * c(BPIFA3, BPIFA2, BPIFB4, BPIFA4P, BPIFA1, CDK5RAP1, BPIFB1) 0 5 0 0.938277266507294 323 0.550437694860823 0 0 0 -Inf LTS-021 chr20 31973595 32233698 260104 * c(CDK5RAP1, SNTA1, CBFA2T2) 0.193195866140525 4 0.26409657324547 1.08465321573515 190 0.523547526153514 4 4 0 -6.74257728534065 LTS-021 chr20 32233699 32248163 14465 * c(NECAB3, CBFA2T2) 0.456 1 NA 1.40453307696729 121 0.55394046730882 6 6 0 -5.76441069921799 LTS-021 chr20 32248164 33176468 928305 * c(MIR4755, PXMP4, C20orf144, CHMP4B, PIGU, ACTL10, E2F1, AHCY, RALY, ASIP, NECAB3, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2) 0.218681205628193 22 0.228466585126754 1.20406852756556 900 0.607736292080621 5 5 0 -6.73845202625533 LTS-021 chr20 33176469 33203752 27284 * PIGU NA 0 NA 0.701 1 NA NA NA NA NA LTS-021 chr20 33203753 34145221 941469 * c(MIR499B, MMP24-AS1, PROCR, MMP24, CEP250, PIGU, HMGB3P1, FAM83C, C20orf173, NCOA6, TRPC4AP, GGT7, GSS, EIF6, ERGIC3, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, GDF5) 0.233611242532304 49 0.22577543249514 1.05478297624733 1921 0.969916155298061 4 4 0 -6.73434458998332 LTS-021 chr20 34145222 34146779 1558 * ERGIC3 0.488 1 NA 0.975785562892825 9 0.33781199570833 3 3 0 -5.76442240644685 LTS-021 chr20 34146780 34537994 391215 * c(RBM12, ROMO1, PHF20, SPAG4, CPNE1, NFS1, RBM39) 0.373465696108661 25 0.16799578367725 0.986638960986926 826 0.471480807153042 3 2 1 -6.74322978014308 LTS-021 chr20 34537995 34575350 37356 * c(CNBD2, PHF20, SCAND1) 0 1 NA 1.00655760131001 71 0.403539528804611 3 3 0 -5.76507997464033 LTS-021 chr20 34575351 35406570 831220 * c(TGIF2-C20orf24, MYL9, SOGA1, CNBD2, EPB41L1, DLGAP4, AAR2, C20orf24, NDRG3, TGIF2, NORAD, DSN1, SLA2) 0.0750472667257678 16 0.179581550648538 0.999923412346043 922 0.664581760725084 6 6 0 -7.05575911454021 LTS-021 chr20 35406571 35407394 824 * SOGA1 0.452 1 NA 0.892399773067034 17 0.279970875586141 3 3 0 -5.76442627128566 LTS-021 chr20 35407395 35869619 462225 * c(MROH8, SOGA1, TLDC2, SAMHD1, RBL1, RPN2) 0.315425162192138 18 0.220368289475904 1.04783602703943 872 0.574233434632957 4 3 1 -6.73904703455434 LTS-021 chr20 35869620 35869784 165 * RPN2 0 1 NA 0.874611195188896 3 0.583361237427834 3 3 0 -5.76441158182303 LTS-021 chr20 35869785 36760905 891121 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, GHRH, NNAT, CTNNBL1, RPRD1B, RPN2, MANBAL, SRC, TGM2, TTI1) 0.158972217784166 14 0.21151130694843 0.954079794148761 670 0.498135354948552 4 4 0 -6.83253702868499 LTS-021 chr20 36760906 36793501 32596 * TGM2 0.46 1 NA 1.31872470536273 71 0.947043564934211 5 5 0 -5.7644821199404 LTS-021 chr20 36793502 36850940 57439 * c(TGM2, KIAA1755) 0.336793724738671 13 0.197182916511808 1.0411343313212 101 0.504033086490587 4 3 1 -6.73340448665471 LTS-021 chr20 36850941 36946101 95161 * c(BPI, KIAA1755) 0 1 NA 1.01545442732021 165 0.624089586851801 4 4 0 -5.76518250198772 LTS-021 chr20 36946102 36993452 47351 * c(LBP, BPI) 0.0616356871257144 4 0.2235 1.0880937158957 101 0.45956047663302 10 10 0 -6.83568399100979 LTS-021 chr20 36993453 36995346 1894 * LBP NA 0 NA 0.766 1 NA NA NA NA NA LTS-021 chr20 36995347 39974502 2979156 * c(SNHG11, SLC32A1, ADIG, ZHX3, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, PLCG1, RALGAPB, DHX35, LPIN3, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, MAFB) 0.156614074579555 25 0.222191456481417 0.884143863098624 1562 0.465800534175632 3 3 0 -6.8878268412254 LTS-021 chr20 39974503 39984690 10188 * LPIN3 0 1 NA 0.905169352427988 59 0.513266133603367 3 3 0 -5.76444088050707 LTS-021 chr20 39984691 42090250 2105560 * c(PTPRT, SRSF6, LPIN3, CHD6, EMILIN3) 0.0311055084399006 20 0.121162298721917 0.823611662869203 856 0.466906120877882 4 4 0 -8.41801541853334 LTS-021 chr20 42090251 42090343 93 * SRSF6 NA 0 NA 0.926 1 NA NA NA NA NA LTS-021 chr20 42090344 42157354 67011 * c(L3MBTL1, SRSF6) 0 3 0 1.02162038339203 83 0.383219013774586 0 0 0 -Inf LTS-021 chr20 42157355 42160883 3529 * L3MBTL1 0.416 1 NA 1.45637321135876 39 0.995491378677004 6 6 0 -5.76441367506244 LTS-021 chr20 42160884 44313528 2152645 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, SGK2, WFDC2, SPINT3, TOMM34, SERINC3, PKIG, RBPJL, FITM2, WFDC12, RIMS4, WFDC10A, WFDC6, R3HDML, GTSF1L, WFDC5, WFDC11, WFDC9, L3MBTL1, TP53TG5, WFDC10B, HNF4A, KCNS1, MYBL2, IFT52, OSER1, PIGT, PI3, DBNDD2, EPPIN, JPH2, KCNK15, SDC4, SEMG1, SEMG2, SLPI, STK4, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, MATN4, WISP2, SYS1, WFDC8 NA NA NA NA NA NA NA NA NA LTS-021 ) 0.169686519858451 70 0.219006104266534 0.960710130995733 2897 0.591226510590672 4 4 0 -6.8330733106431 LTS-021 NA NA NA NA LTS-021 chr20 44313529 44352620 39092 * c(WFDC13, WFDC10B, SPINT4) 0.489 1 NA 0.593477967895826 39 0.260666929841686 1 1 0 -5.76580020240514 LTS-021 chr20 44352621 44477173 124553 * c(ACOT8, UBE2C, DNTTIP1, WFDC3, SPINT4, TNNC2, SNX21) 0.448356557658598 11 0.0387077629047573 1.0836422919254 301 0.523605316983529 4 2 2 -8.96054895522602 LTS-021 chr20 44477174 44516160 38987 * c(ACOT8, SPATA25, ZSWIM3, ZSWIM1) 0 1 NA 1.01692474563442 169 0.582389129834072 4 4 0 -5.76475918532631 LTS-021 chr20 44516161 44690466 174306 * c(SPATA25, NEURL2, MMP9, PLTP, CTSA, SLC12A5, NCOA5, ZNF335, PCIF1) 0.178020558352541 15 0.234220429347676 0.965809843923993 745 0.513309747574121 5 5 0 -6.76412920603105 LTS-021 chr20 44690467 44691350 884 * NCOA5 0.497 1 NA 0.665808847664346 21 0.230373278873761 1 1 0 -5.76443664883745 LTS-021 chr20 44691351 45878118 1186768 * c(ZNF663P, MIR3616, TP53RK, OCSTAMP, EYA2, ZMYND8, SLC35C2, ZNF334, NCOA5, ELMO2, CDH22, SLC13A3, MKRN7P, SLC2A10, CD40) 0.269858523706783 25 0.209291527141768 1.01365475467893 1103 0.49494177673015 3 3 0 -6.75166248409445 LTS-021 chr20 45878119 45891167 13049 * ZMYND8 0 1 NA 1.38564100796978 9 0.946618249935586 6 6 0 -5.76441085403615 LTS-021 chr20 45891168 47567896 1676729 * c(LOC100131496, ARFGEF2, ZMYND8, LINC00494, SULF2, PREX1, NCOA3) 0.0442527565010787 11 0.138996729850349 1.07148580898735 671 0.56298626421272 6 6 0 -7.47395249957065 LTS-021 chr20 47567897 47580347 12451 * ARFGEF2 0.496 1 NA 1.17500204916206 19 0.501811426336965 5 5 0 -5.76450971238613 LTS-021 chr20 47580348 47688957 108610 * c(ARFGEF2, CSE1L) 0.381505707637942 11 0.194022304247358 1.03860192354081 285 0.401031885687753 4 2 2 -6.74319271963641 LTS-021 chr20 47688958 47691854 2897 * CSE1L 0 1 NA 1.33556918353617 13 0.675698261819313 6 6 0 -5.76441814554149 LTS-021 chr20 47691855 50216236 2524382 * c(SNORD12B, MIR3194, ATP9A, TRERNA1, CEBPB, FAM65C, CSE1L, SLC9A8, ADNP, SNORD12C, MOCS3, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, ZFAS1, NFATC2, BCAS4, DDX27, RNF114, ZNFX1, PTGIS, PTPN1, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, PARD6B, DPM1, B4GALT5, SPATA2) 0.237956312305075 56 0.223939845094122 1.03864973097014 2444 0.642452062703693 4 4 0 -6.74376390657997 LTS-021 chr20 50216237 50216286 50 * ATP9A 0.466 1 NA 1.213 1 NA NA NA NA NA LTS-021 chr20 50216287 54945783 4729497 * c(MIR4756, ATP9A, FAM210B, TSHZ2, CBLN4, CYP24A1, SUMO1P1, MC3R, PFDN4, ZFP64, DOK5, SALL4, AURKA, ZNF217, BCAS1) 0.316159130446713 43 0.199433605523697 1.03113372683904 1273 0.598064939265628 4 3 1 -6.76412231963526 LTS-021 chr20 54945784 54959316 13533 * AURKA 0 1 NA 1.34222542440385 17 0.305330149182815 6 6 0 -5.76455587531275 LTS-021 chr20 54959317 55913441 954125 * c(MIR4325, MIR5095, GCNT7, CSTF1, FAM209A, SPO11, FAM209B, RTFDC1, CASS4, BMP7, AURKA, TFAP2C) 0.067324812530009 13 0.168749814814713 0.922843435387535 555 0.572995631209105 5 5 0 -7.23848702554116 LTS-021 chr20 55913442 55974893 61452 * c(MTRNR2L3, MIR5095, SPO11, RBM38, RAE1) 0.473 1 NA 0.94979216678953 135 0.452096235419747 3 3 0 -5.76443490470155 LTS-021 chr20 55974894 56223451 248558 * c(MIR5095, CTCFL, PCK1, RBM38, PMEPA1, ZBP1) 0.416044193036125 11 0.141306822842417 0.987940994578254 328 0.587310693217266 4 2 2 -6.83851454128601 LTS-021 chr20 56223452 56223679 228 * PMEPA1 0 1 NA 0.835418057668743 5 1.26645698703114 2 2 0 -5.76441045638697 LTS-021 chr20 56223680 57617932 1394253 * c(MIR298, SLMO2-ATP5E, MIR4532, C20orf85, APCDD1L-AS1, GNAS-AS1, CTSZ, APCDD1L, GNAS, MIR296, PRELID3B, ATP5E, NELFCD, PPP4R1L, PMEPA1, RAB22A, NPEPL1, TUBB1, STX16, VAPB) 0.242636630129209 19 0.225099211395243 0.963801012051591 1556 0.482495033933363 3 3 0 -6.73879336457589 LTS-021 chr20 57617933 57769140 151208 * ZNF831 0.3325509533753 5 0.202777710806686 0.635580203013129 75 0.554876193641672 1 1 0 -6.73472925903012 LTS-021 chr20 57769141 57831236 62096 * ZNF831 0 1 NA 0.754324431290009 75 0.314917593682555 2 2 0 -5.76502799195623 LTS-021 chr20 57831237 58443997 612761 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3) 0 6 0 0.724104608684246 272 0.398838629150661 0 0 0 -Inf LTS-021 chr20 58443998 58444864 867 * SYCP2 NA 0 NA 1.353 1 NA NA NA NA NA LTS-021 chr20 58444865 60711869 2267005 * c(CDH4, MIR1257, MIR4533, SYCP2, LSM14B, C20orf197, MIR646HG, PPP1R3D, PSMA7, CDH26, FAM217B, TAF4) 0.0577740117331389 22 0.171957258355961 0.90843897699485 940 0.551049406878013 4 4 0 -7.40915549240192 LTS-021 chr20 60711870 60775922 64053 * c(SS18L1, MTG2, PSMA7) 0.441 1 NA 0.978758231615515 193 0.478043306853623 3 3 0 -5.76470338536788 LTS-021 chr20 60775923 60990162 214240 * c(MIR4758, ADRM1, HRH3, RBBP8NL, MTG2, LAMA5, RPS21, CABLES2, OSBPL2) 0.271521362475642 18 0.19473344442875 1.06168666748609 861 0.576401069961462 3 3 0 -6.74126624581456 LTS-021 chr20 60990163 60990268 106 * RBBP8NL 0 1 NA 1.51105892826104 3 2.92334380461827 7 7 0 -5.76441013978216 LTS-021 chr20 60990269 61303540 313272 * c(SLCO4A1-AS1, MIR1-1HG, GATA5, RBBP8NL, C20orf166-AS1, SLCO4A1, MIR1-1, MIR133A2) 0.109432497143925 10 0.214397994393604 0.877205795295168 284 0.573987681310689 5 5 0 -6.90891828652419 LTS-021 chr20 61303541 61428423 124883 * c(LINC00659, SLCO4A1, NTSR1, MRGBP) 0.476 1 NA 0.746464541625123 121 0.423857657444223 2 2 0 -5.76549605484946 LTS-021 chr20 61428424 61443547 15124 * c(OGFR-AS1, OGFR, MRGBP) 0.44587069051714 10 0.0431201164706735 1.04632916805145 114 0.456118122225087 7 4 3 -8.56005546435145 LTS-021 chr20 61443548 61443922 375 * OGFR 0 1 NA 1.1149100874889 9 0.928977903098047 4 4 0 -5.76441024764966 LTS-021 chr20 61443923 61519343 75421 * c(DPH3P1, TCFL5, OGFR, DIDO1, COL9A3) 0.188617933106917 12 0.22716893993838 0.9846676922129 395 0.766548275444982 5 5 0 -6.73895332202247 LTS-021 chr20 61519344 61519618 275 * DIDO1 0.465 1 NA 0.838218651430831 7 0.298834402303349 2 2 0 -5.76441788872347 LTS-021 chr20 61519619 61595636 76018 * c(DIDO1, GID8, SLC17A9) 0.444664471832996 13 0.0454965481925376 0.919014881370238 267 0.431203214654731 2 1 1 -8.38964792969241 LTS-021 chr20 61595637 61595667 31 * SLC17A9 0 1 NA 0.895161517002312 3 2.16507182328901 3 3 0 -5.76441014332305 LTS-021 chr20 61595668 61918283 322616 * c(LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, BHLHE23, NKAIN4, MIR124-3, YTHDF1, ARFGAP1, SLC17A9, LOC63930, HAR1A, HAR1B, BIRC7) 0.223103256876372 22 0.227867399923842 0.958252558794221 383 0.58313968228414 4 4 0 -6.74285159601435 LTS-021 chr20 61918284 61918870 587 * ARFGAP1 NA 0 NA 0.139 1 NA NA NA NA NA LTS-021 chr20 61918871 62126299 207429 * c(CHRNA4, EEF1A2, KCNQ2, ARFGAP1, COL20A1) 0.208930591801264 14 0.229071609322941 0.761159147972617 497 0.468091511943876 3 3 0 -6.78671721422254 LTS-021 chr20 62126300 62153060 26761 * c(EEF1A2, PPDPF) NA 0 NA 0.669449136726212 29 0.204134162152334 1 NA NA -5.76566126059556 LTS-021 chr20 62153061 62153066 6 * PPDPF NA 0 NA 0.915 1 NA NA NA NA NA LTS-021 chr20 62153067 62165730 12664 * c(PTK6, PPDPF) 0 1 NA 1.14666030423527 59 0.611774395641941 4 4 0 -5.76445872889597 LTS-021 chr20 62165731 62572091 406361 * c(MIR941-1, MIR941-3, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, ABHD16B, GMEB2, STMN3, RTEL1, LIME1, UCKL1, SLC2A4RG, PTK6, SRMS, TPD52L2, FNDC11, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.11558951438641 20 0.197817373245867 1.03244261262855 1341 0.565968004128027 6 6 0 -6.86527156154229 LTS-021 chr20 62572092 62576991 4900 * c(MIR1914, UCKL1, MIR647) 0.475 1 NA 1.25615021727306 39 0.2590608336271 5 5 0 -5.76441356004476 LTS-021 chr20 62576992 62599141 22150 * c(UCKL1-AS1, UCKL1, ZNF512B) 0.339193746214228 11 0.184785526784678 1.05741106853394 187 0.675516924502649 4 3 1 -6.73341347748722 LTS-021 chr20 62599142 62605979 6838 * c(SAMD10, ZNF512B) 0 1 NA 1.15835392153905 19 0.785882228576892 4 4 0 -5.76443331241122 LTS-021 chr20 62605980 62905352 299373 * c(RGS19, SAMD10, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, SOX18, PCMTD2, TCEA2) 0.103641417730938 13 0.204029566736206 0.976526395886354 641 0.660748496571524 6 6 0 -6.86855560881252 LTS-021 chr20 62905353 62959313 53961 * c(LINC00266-1, PCMTD2) NA 0 NA 0.943052057637573 57 0.377824127642176 3 NA NA -5.76441492611156 LTS-021 chr21 9825764 9825838 75 * MIR3648-1 0.369 1 NA 2.58886351023641 3 1.17235546372819 14 14 0 -5.76441014043089 LTS-021 chr21 9825839 10793871 968033 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.327996046387752 18 0.0784166015502636 0.745346687238438 61 0.740185526145138 1 1 0 -6.78436798149997 LTS-021 chr21 10793872 10793885 14 * character(0) NA 0 NA 0.32 1 NA NA NA NA NA LTS-021 chr21 10793886 11059877 265992 * c(BAGE, TPTE, BAGE3) 0.302603393536626 17 0.0812273950455285 0.394987991272439 124 0.44238680966472 0 0 0 -7.03018994867115 LTS-021 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.4595054517179 6 1.30993746670086 6 NA NA -5.76443511524707 LTS-021 chr21 14745307 14756794 11488 * character(0) 0.348 1 NA 0.683959362249538 9 0.961276379496437 1 1 0 -5.76445601752779 LTS-021 chr21 14756795 19169218 4412424 * c(MIR3156-3, LINC01549, SAMSN1-AS1, BTG3, LIPI, ABCC13, CXADR, C21orf91-OT1, USP25, POTED, LOC388813, MIR99AHG, ANKRD20A11P, MIRLET7C, MIR125B2, MIR99A, RBM11, NA, C21orf91, SAMSN1, HSPA13, NRIP1) 0.37811026119448 23 0.0685847907176698 0.346068736661744 1103 0.231614950817681 0 0 0 -9.81058489243923 LTS-021 chr21 19169219 19651331 482113 * c(CHODL, CHODL-AS1, C21orf91, TMPRSS15) 0 1 NA 0.302131440740428 109 0.220918671988195 0 0 0 -6.81695493495365 LTS-021 chr21 19651332 26946466 7295135 * c(RNU6-67P, MIR155HG, D21S2088E, LOC339622, LINC00317, LINC00320, MIR155, NCAM2, LINC00158, LINC00308, TMPRSS15) 0.252466725461762 4 0.196364457068992 0.345569240378058 332 0.187179361120163 0 0 0 -11.9883072428756 LTS-021 chr21 26946467 26957909 11443 * c(MIR155HG, LINC00515) NA 0 NA 1.416 1 NA NA NA NA NA LTS-021 chr21 26957910 28291073 1333164 * c(ADAMTS5, CYYR1, GABPA, APP, ATP5J, MRPL39, JAM2, ADAMTS1) 0.158786337752917 13 0.112164028238866 0.703340090011091 709 0.39053178621985 3 3 0 -7.58751986522912 LTS-021 chr21 28291074 31586459 3295386 * c(GRIK1-AS2, MIR4759, RWDD2B, USP16, CCT8, ADAMTS5, LINC00161, LINC00189, LINC00314, LTN1, CLDN17, LINC00307, GRIK1, N6AMT1, LINC00113, MAP3K7CL, BACH1, GRIK1-AS1, CLDN8) 0.152828655440465 28 0.117039511937197 0.926740421170738 1177 0.468572632873328 3 3 0 -7.1936266783491 LTS-021 chr21 31586460 32491064 904605 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.144682340679851 19 0.108719097242679 0.492748486025602 532 0.335718310119702 0 0 0 -8.44969432733702 LTS-021 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.038 1 NA NA NA NA NA LTS-021 chr21 32491171 45857013 13365843 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, WDR4, HSF2BP, LINC00310, LINC00313, B3GALT5-AS1, OLIG1, TCP10L, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, RRP1B, ICOSLG, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, NA NA NA NA NA NA NA NA NA LTS-021 LINC00319, AATBC, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, AGPAT3, SCAF4, PWP2, EVA1C, PRDM15, SH3BGR, ITSN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 TMPRSS3, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC01548, U2AF1, WRB, C21orf2, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, C21orf33, DSCR8, URB1-AS1, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, RSPH1, UMODL1, PAXBP1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.116206346043206 272 0.113541294557465 1.0251672847857 12302 0.843865986063108 4 4 0 -7.29607096171823 LTS-021 NA NA NA NA LTS-021 chr21 45857014 46131515 274502 * c(LRRC3-AS1, TSPEAR-AS2, KRTAP12-2, KRTAP12-1, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, TSPEAR, TRPM2, LRRC3) 0.190423745603118 20 0.18976752398104 0.755385972117145 576 0.53255198133428 4 4 0 -6.83244766680748 LTS-021 chr21 46131516 46188936 57421 * UBE2G2 NA 0 NA 1.572 1 NA NA NA NA NA LTS-021 chr21 46188937 48084820 1895884 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, ITGB2, PICSAR, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.158534831760399 108 0.117035301008896 0.967754435019647 2942 0.58419026389377 4 4 0 -6.97697423935239 LTS-021 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.1174498963151 5 0.1778277256223 4 NA NA -5.76441187936159 LTS-021 chr22 16157787 16157827 41 * character(0) 0.294 1 NA 1.086 1 NA NA NA NA NA LTS-021 chr22 16157828 17156550 998723 * c(CCT8L2, ANKRD62P1-PARP4P3, POTEH, TPTEP1, OR11H1) 0.358172963308 9 0.149611162685142 0.519531868359818 142 0.39256969214458 0 0 0 -6.75833752871293 LTS-021 chr22 17156551 17156758 208 * TPTEP1 NA 0 NA 0.965 1 NA NA NA NA NA LTS-021 chr22 17156759 17660424 503666 * c(CECR7, CECR5-AS1, GAB4, XKR3, IL17RA, HSFY1P1, CECR6, CECR5, TPTEP1, CECR1) 0.225332485923071 24 0.235717590791811 0.924292859002202 592 0.633365280852122 3 3 0 -6.74561016516905 LTS-021 chr22 17660425 17660556 132 * CECR1 0.487 1 NA 0.885194039814046 3 0.705291665435891 3 3 0 -5.76441067944445 LTS-021 chr22 17660557 19109764 1449208 * c(FLJ41941, MIR3198-1, USP18, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, CECR3, CECR2, TUBA8, CECR1, ATP6V1E1, PEX26, PRODH, MICAL3, BID, MIR648, DGCR6, SLC25A18, DGCR2) 0.337399938610363 53 0.171044711050999 0.98104077807264 1478 0.643939265396685 3 2 1 -6.74314001158274 LTS-021 chr22 19109765 19117795 8031 * c(DGCR14, DGCR2) 0 1 NA 1.14453561931139 9 0.675294709326561 4 4 0 -5.76443354433209 LTS-021 chr22 19117796 19747284 629489 * c(SEPT5-GP1BB, C22orf39, LINC00895, TSSK2, GSC2, MRPL40, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, CLTCL1, DGCR14, CDC45) 0.0634457337028758 14 0.16819807789209 0.916045538397236 1014 0.513096758721456 5 5 0 -7.24008329112151 LTS-021 chr22 19747285 19751829 4545 * TBX1 0.495 1 NA 0.913759481133578 19 0.436826420489222 3 3 0 -5.7644205180269 LTS-021 chr22 19751830 20307418 555589 * c(MIR1286, MIR1306, MIR3618, MIR4761, TXNRD2, TANGO2, COMT, LINC00896, TRMT2A, LOC284865, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, RANBP1, RTN4R, TBX1, C22orf29, DGCR6L) 0.317212789518966 52 0.204029168463018 1.01960763396442 1376 0.584614469576365 4 3 1 -6.74201201414437 LTS-021 chr22 20307419 20307499 81 * DGCR6L NA 0 NA 0.409 1 NA NA NA NA NA LTS-021 chr22 20307500 20721039 413540 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0 1 NA 0.40107309525567 46 0.464133429195332 0 0 0 -5.80065926591542 LTS-021 chr22 20721040 20721803 764 * character(0) NA 0 NA 1.09 1 NA NA NA NA NA LTS-021 chr22 20721804 21385843 664040 * c(TUBA3FP, CRKL, AIFM3, POM121L4P, SERPIND1, THAP7-AS1, MED15, PI4KA, SLC7A4, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29) 0.337585496016956 40 0.190771033386851 0.986122242716741 1455 0.523331802326922 3 2 1 -6.7413066469141 LTS-021 chr22 21385844 21386024 181 * SLC7A4 0 1 NA 1.6289026661246 3 2.38716700993737 8 8 0 -5.76441017379107 LTS-021 chr22 21386025 22319826 933802 * c(MIR301B, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L8P, YPEL1, PI4KAP2, LRRC74B, BCRP2, MIR130B, P2RX6P, MAPK1, TMEM191C, SLC7A4, UBE2L3, TOP3B, PPM1F) 0.0698696194084579 10 0.189179544348748 1.01237434620779 924 0.596577103169746 5 5 0 -7.07357733690228 LTS-021 chr22 22319827 22330410 10584 * TOP3B NA 0 NA 1.29552283682961 47 0.40750838768233 5 NA NA -5.7644704184435 LTS-021 chr22 22330411 22385410 55000 * TOP3B NA 0 NA 0.37 1 NA NA NA NA NA LTS-021 chr22 22385411 22516998 131588 * character(0) 0.487 1 NA 0.554779146238657 31 0.299409257081017 1 1 0 -5.77946218415451 LTS-021 chr22 22516999 22578666 61668 * character(0) 0.473878886299677 4 0.0167605688049859 0.601599459277826 79 0.425516209023243 0 0 0 -13.8147064437049 LTS-021 chr22 22578667 22578670 4 * character(0) NA 0 NA 0.857 1 NA NA NA NA NA LTS-021 chr22 22578671 23114350 535680 * c(ZNF280A, ZNF280B, PRAME, POM121L1P, LL22NC03-63E9.3, VPREB1, GGTLC2, BMS1P20) 0.303481516737503 40 0.185435411037554 0.805663482373906 563 1.38341487828272 2 2 0 -6.73333342110686 LTS-021 chr22 23114351 23154633 40283 * character(0) 0 1 NA 0.846581804244057 23 0.579324664755158 2 2 0 -5.76481333034543 LTS-021 chr22 23154634 23482682 328049 * c(IGLL5, RSPH14, GNAZ, MIR650) 0.195943695533978 9 0.231888323217113 0.741812186600265 262 0.509701269204892 3 3 0 -6.8191248858327 LTS-021 chr22 23482683 23487465 4783 * RSPH14 NA 0 NA 1.993 1 NA NA NA NA NA LTS-021 chr22 23487466 24340955 853490 * c(DDTL, ZDHHC8P1, C22orf15, DDT, GSTTP1, FBXW4P1, RGL4, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3, RAB36) 0.184884071801776 30 0.230356744822151 0.955265468624033 1084 0.635075161751764 4 4 0 -6.77515070340748 LTS-021 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.88 1 NA NA NA NA NA LTS-021 chr22 24342341 24384173 41833 * c(GSTTP1, GSTT1, LOC391322) 0.271825512484147 4 0.188573593061171 3.39239420221108 58 2.16891245088425 14 11 3 -6.73351219772948 LTS-021 chr22 24384174 26388337 2004164 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, GSTT1, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.145321422358476 45 0.209316726324467 0.967703752896749 1935 0.610375943060514 4 4 0 -6.86862977256204 LTS-021 chr22 26388338 26388375 38 * MYO18B NA 0 NA 0.693 1 NA NA NA NA NA LTS-021 chr22 26388376 26779594 391219 * c(SEZ6L, MYO18B) 0.154477426015326 2 0.266579256507328 0.599788939921592 216 0.317899526615556 1 1 0 -7.02644381736576 LTS-021 chr22 26779595 26847714 68120 * c(ASPHD2, HPS4) 0 2 0 1.04546000948519 80 0.344616344190963 0 0 0 -Inf LTS-021 chr22 26847715 26853905 6191 * HPS4 0.435 1 NA 1.01194871326233 33 0.868123300225227 3 3 0 -5.76443793496846 LTS-021 chr22 26853906 30079213 3225308 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, RFPL1S, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, AP1B1, EWSR1, TTC28, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, SRRD, MN1, MIAT, NEFH, NF2, RFPL1, XBP1, KREMEN1, ZNRF3, TPST2, NIPSNAP1, THOC5, HPS4) 0.339920608893216 70 0.183797834860422 1.0091946206042 2572 0.551944007259337 3 2 1 -6.76993482290105 LTS-021 chr22 30079214 30079628 415 * NF2 0 1 NA 0.938265410918194 9 0.733136829733107 3 3 0 -5.76441013476346 LTS-021 chr22 30079629 30637539 557911 * c(HORMAD2, CABP7, UQCR10, LIF, NF2, ZMAT5, ASCC2, MTMR3) 0.0754361041604096 10 0.200920548144451 1.0455948604364 620 0.623954600684336 6 6 0 -6.96317184221789 LTS-021 chr22 30637540 30639110 1571 * LIF 0.415 1 NA 0.994566004200931 39 0.747118199877632 3 3 0 -5.76441576903996 LTS-021 chr22 30639111 30975799 336689 * c(SF3A1, RNF215, PES1, SEC14L2, SEC14L3, SEC14L4, SDC4P, LIF, OSM, MTFP1, CCDC157, GATSL3, SEC14L6, TBC1D10A, KIAA1656, GAL3ST1) 0.236101555767797 33 0.232571140142694 1.02110502257908 1023 0.666370836732293 4 4 0 -6.73609782279266 LTS-021 chr22 30975800 30987861 12062 * PES1 0.486 1 NA 1.11203639456394 79 0.552160568210607 4 4 0 -5.7644180535757 LTS-021 chr22 30987862 31302233 314372 * c(MIR3200, DUSP18, PES1, OSBP2, SLC35E4, TCN2) 0.42039636577395 11 0.146732719286091 1.01772434577652 348 0.733009788335929 4 2 2 -6.84293086474806 LTS-021 chr22 31302234 31302820 587 * OSBP2 0 1 NA 0.642720987176556 11 1.06584316601715 1 1 0 -5.7644102163263 LTS-021 chr22 31302821 32078147 775327 * c(MIR3928, PIK3IP1, SELENOM, MORC2-AS1, MORC2, PATZ1, PISD, OSBP2, PRR14L, INPP5J, LIMK2, DRG1, PLA2G3, TUG1, EIF4ENIF1, SMTN, RNF185, SFI1) 0.26932562740999 33 0.215565104768697 1.04715320973579 1559 0.748040098213212 3 3 0 -6.74425567685545 LTS-021 chr22 32078148 32078463 316 * PRR14L 0 1 NA 1.03095259658979 9 0.813973655047331 4 4 0 -5.76441107596312 LTS-021 chr22 32078464 32341587 263124 * c(PRR14L, C22orf24, YWHAH, DEPDC5) 0.0508715380165182 7 0.178021266787346 1.03243627079874 518 0.680060974168026 9 9 0 -6.98839391161243 LTS-021 chr22 32341588 32343369 1782 * YWHAH NA 0 NA 0.305 1 NA NA NA NA NA LTS-021 chr22 32343370 32547981 204612 * c(C22orf42, AP1B1P1, SLC5A1, YWHAH) 0.141144593085762 10 0.205300565567224 0.849746466362325 218 0.885709146202645 6 6 0 -6.7930584571762 LTS-021 chr22 32547982 32554985 7004 * C22orf42 0.357 1 NA 0.519204651434733 11 0.198233379447743 0 0 0 -5.76509807131604 LTS-021 chr22 32554986 32741945 186960 * c(RFPL2, C22orf42, SLC5A4) 0.43124889084773 9 0.0418860889131994 0.701631788221403 144 0.410879470404265 2 1 1 -8.18786925773749 LTS-021 chr22 32741946 32804153 62208 * c(RFPL3S, RFPL3, LOC339666, RTCB) 0 1 NA 0.743680750045646 133 0.410324065450259 2 2 0 -5.76507499150476 LTS-021 chr22 32804154 35660914 2856761 * c(HMGXB4, LARGE-AS1, MIR4764, BPIFC, FBXO7, RTCB, TIMP3, SYN3, ISX, LARGE1) 0.18608625893981 21 0.222689469890249 0.850542159812877 701 0.61525244917316 3 3 0 -6.84085941903458 LTS-021 chr22 35660915 35790081 129167 * c(HMGXB4, TOM1, MIR3909, HMOX1) 0 5 0 1.05780669679905 253 0.647976330117851 0 0 0 -Inf LTS-021 chr22 35790082 35797333 7252 * c(HMOX1, MCM5) 0.477 1 NA 1.73505592502265 11 0.79413472637605 8 8 0 -5.76441229317748 LTS-021 chr22 35797334 36536488 739155 * c(RBFOX2, RASD2, MB, MCM5, APOL6, APOL5, APOL3) 0.382904017862105 11 0.186547239934749 1.08267549415229 514 0.512611463444192 4 2 2 -6.74423173562285 LTS-021 chr22 36536489 36655851 119363 * c(APOL2, APOL4, APOL3, APOL1) 0.434178720629209 8 0.0643460232981473 0.740016158089537 262 0.394576584025937 2 1 1 -7.4841188379561 LTS-021 chr22 36655852 36962353 306502 * c(CACNG2, TXN2, MYH9, FOXRED2, APOL1, EIF3D) 0.39586490957244 10 0.147137313040877 1.20359559379486 520 0.678550412304557 5 3 2 -6.77484489088075 LTS-021 chr22 36962354 37159901 197548 * c(CACNG2, IFT27) 0 1 NA 0.901678919771893 45 0.645213103939272 3 3 0 -5.76487174228265 LTS-021 chr22 37159902 37522885 362984 * c(LL22NC01-81G9.3, IFT27, CSF2RB, TMPRSS6, TEX33, IL2RB, MPST, NCF4, PVALB, TST, KCTD17) 0.13754582787578 20 0.21217665802469 0.991578423178381 634 0.577704078712912 5 5 0 -6.81929191512552 LTS-021 chr22 37522886 37523721 836 * IL2RB 0.295 1 NA 0.88794025496857 17 0.112513071136071 3 3 0 -5.76453256682621 LTS-021 chr22 37523722 37764253 240532 * c(ELFN2, C1QTNF6, CYTH4, IL2RB, RAC2, SSTR3) 0.389591416783946 11 0.134403192602773 1.04941306189466 417 0.585232813450683 4 2 2 -6.76764359905434 LTS-021 chr22 37764254 37764324 71 * ELFN2 0 1 NA 1.35242004674168 3 1.33081641608951 6 6 0 -5.76441016101365 LTS-021 chr22 37764325 37912385 148061 * c(ELFN2, CARD10, MFNG) 0.165739567808667 10 0.246064693390444 1.09175158703361 350 0.7184733156071 6 6 0 -6.7455747545486 LTS-021 chr22 37912386 38035562 123177 * c(CDC42EP1, SH3BP1, GGA1, CARD10, LGALS2) 0.454 1 NA 1.191483738216 203 0.741343914483373 5 5 0 -5.76467056793488 LTS-021 chr22 38035563 38227917 192355 * c(TRIOBP, ANKRD54, GCAT, SH3BP1, H1F0, LGALS1, PDXP, NOL12, GALR3) 0.423528986338858 27 0.0995209036153222 1.15815575723384 658 0.595316221786558 4 2 2 -6.9870676389016 LTS-021 chr22 38227918 38323479 95562 * c(ANKRD54, EIF3L, MIR658, MIR659, MICALL1) 0 1 NA 1.11163271201085 199 0.666762139805962 4 4 0 -5.7644514689435 LTS-021 chr22 38323480 38481740 158261 * c(MIR4534, SLC16A8, POLR2F, SOX10, BAIAP2L2, C22orf23, MICALL1, PICK1) 0.0447252098157469 9 0.130333333333333 1.03838338873633 479 0.672518704447592 14 14 0 -7.01351504167617 LTS-021 chr22 38481741 38485064 3324 * BAIAP2L2 0.431 1 NA 1.48730945361023 23 0.859399572088518 7 7 0 -5.76441494743 LTS-021 chr22 38485065 39178701 693637 * c(DNAL4, DDX17, KDELR3, DMC1, CSNK1E, MAFF, CBY1, SUN2, TMEM184B, KCNJ4, LOC400927, TOMM22, FAM227A, BAIAP2L2, PLA2G6, GTPBP1, JOSD1) 0.236778920538536 30 0.208010634675083 1.12924055844503 1318 0.571483901601997 4 4 0 -6.73593643261932 LTS-021 chr22 39178702 39214896 36195 * c(DNAL4, NPTXR, SUN2) 0 1 NA 1.39504680000035 13 0.748040722873376 6 6 0 -5.76441034157787 LTS-021 chr22 39214897 39385513 170617 * c(APOBEC3A_B, APOBEC3A, CBX6, NPTXR, APOBEC3B) 0.0739671794822756 10 0.1825452455329 1.07037587788694 330 0.694886128375224 10 10 0 -6.86815784823046 LTS-021 chr22 39385514 39387558 2045 * c(APOBEC3A_B, APOBEC3B) 0.385 1 NA 1.31642792938668 7 0.69996234592604 5 5 0 -5.76441790443328 LTS-021 chr22 39387559 39827553 439995 * c(APOBEC3A_B, TAB1, APOBEC3D, APOBEC3H, APOBEC3F, CBX7, SNORD43, APOBEC3C, PDGFB, APOBEC3G, RPL3, SYNGR1, APOBEC3B) 0.378608525705217 35 0.162055017112796 1.07566287569854 742 0.785697373271902 4 2 2 -6.74325968287915 LTS-021 chr22 39827554 39887200 59647 * c(LOC100506472, TAB1, MGAT3) 0 1 NA 1.04269093631049 101 0.418687231500773 4 4 0 -5.7648443944199 LTS-021 chr22 39887201 40036987 149787 * c(MGAT3, ATF4, MIEF1, CACNA1I, RPS19BP1) 0.0846323363879621 4 0.185 1.13036405576018 246 0.577138724715257 9 9 0 -6.84808874553188 LTS-021 chr22 40036988 40037086 99 * CACNA1I NA 0 NA 0.779 1 NA NA NA NA NA LTS-021 chr22 40037087 40367853 330767 * c(ENTHD1, CACNA1I, GRAP2) 0.192196955022305 7 0.246966259503871 0.801142746713301 434 0.529547315834715 3 3 0 -6.79466490328413 LTS-021 chr22 40367854 40417780 49927 * FAM83F 0.417 1 NA 0.864884248517931 79 0.269933772997394 3 3 0 -5.76716845133484 LTS-021 chr22 40417781 40521934 104154 * c(LOC100130899, FAM83F, TNRC6B) 0.406 1 NA 0.802619470715508 28 0.263690264430744 2 2 0 -5.76482561711223 LTS-021 chr22 40521935 40545992 24058 * TNRC6B NA 0 NA 2.199 1 NA NA NA NA NA LTS-021 chr22 40545993 40727723 181731 * TNRC6B 0.269486537235354 9 0.22849112552667 1.25075157833924 396 0.634297040250406 6 5 1 -6.73796945341016 LTS-021 chr22 40727724 40728280 557 * TNRC6B 0 1 NA 1.58191280720292 12 0.514089928461407 7 7 0 -5.7644106118068 LTS-021 chr22 40728281 40763041 34761 * c(ADSL, TNRC6B) 0 3 0 1.31569311752623 160 0.737363098795572 0 0 0 -Inf LTS-021 chr22 40763042 40796666 33625 * SGSM3 NA 0 NA 0.665 1 NA NA NA NA NA LTS-021 chr22 40796667 41513629 716963 * c(MIR1281, MIR4766, SLC25A17, DNAJB7, EP300, SGSM3, MCHR1, MKL1, XPNPEP3, ST13, RBX1) 0.0868844514175097 15 0.147178932239768 0.752023129479329 799 0.540771043254287 5 5 0 -7.42415555285768 LTS-021 chr22 41513630 41548008 34379 * EP300 0.333 1 NA 0.698816787111923 79 0.254823342210149 1 1 0 -5.76758008017496 LTS-021 chr22 41548009 47433132 5885124 * c(NDUFA6-AS1, LINC00899, MIR1249, MIR3619, NUP50-AS1, MIR4763, MIR4762, EFCAB6-AS1, PKDREJ, NUP50, TOB2, PACSIN2, PHF21B, TNFRSF13C, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, WBP2NL, POLR3H, CYB5R3, EP300, FBLN1, GRAMD4, TTLL12, ZC3H7B, KIAA0930, ARHGAP8, SERHL2, XRCC6, TBC1D22A, TTLL1, SAMM50, ATXN10, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, CSDC2, RRP7A, NA NA NA NA NA NA NA NA NA LTS-021 MCAT, DESI1, PARVB, LINC00634, OGFRP1, LINC00207, MIRLET7BHG, MIRLET7A3, MIRLET7B, MIR33A, LINC00229, SHISA8, NAGA, NDUFA6, SNU13, ACO2, GTSE1, PMM1, A4GALT, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, PRR5, TRMU, SEPT3, RANGAP1, BIK, PARVG, CERK, EFCAB6, SREBF2, TCF20, TEF, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, C22orf46, CCDC134, SCUBE1, PNPLA3, L3MBTL2, LDOC1L, POLDIP3, PHF5A, KIAA1644, SMDT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-021 RRP7BP, SERHL, CELSR1) 0.191090608573408 244 0.144778787540612 0.70456847798039 7607 0.418204172191921 2 2 0 -7.28531707197342 LTS-021 NA NA NA NA LTS-021 chr22 47433133 47507321 74189 * TBC1D22A NA 0 NA 0.368 1 NA NA NA NA NA LTS-021 chr22 47507322 50297886 2790565 * c(LINC01310, MIR3201, MIR4535, BRD1, TBC1D22A, FAM19A5, LOC284933, C22orf34, LINC00898, ALG12, NA, ZBED4) 0.17672388566024 18 0.143543393725915 0.533924499322896 602 0.316512992436353 0 0 0 -7.75304907456052 LTS-021 chr22 50297887 50297888 2 * ALG12 0.239 1 NA 1.689 1 NA NA NA NA NA LTS-021 chr22 50297889 50691409 393521 * c(MLC1, IL17REL, PIM3, MOV10L1, PANX2, MAPK12, ALG12, CRELD2, TRABD, SELENOO, HDAC10, TUBGCP6) 0.194075205957058 39 0.136061419408854 0.706188112107289 1077 0.417531215881373 3 3 0 -6.97542372052677 LTS-021 chr22 50691410 50845274 153865 * c(PLXNB2, DENND6B, MAPK11, MAPK12, PPP6R2) 0.310799257953832 6 0.182573181674272 0.388647851494808 448 0.207326310643804 0 0 0 -6.86560552382122 LTS-021 chr22 50845275 51121918 276644 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, MAPK8IP2, NCAPH2, CHKB-CPT1B, ARSA, ODF3B, MIOX, SBF1, SYCE3, ADM2, SHANK3, LMF2, PPP6R2, SCO2) 0.175223782929961 28 0.143273497107961 0.73964219464969 1228 0.423882745472237 4 4 0 -6.94587795068086 LTS-021 chr22 51121919 51183804 61886 * c(ACR, SHANK3) NA 0 NA 0.654069547384822 167 0.287683714573172 1 NA NA -5.7649210609145 LTS-021 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.193 1 NA NA NA NA NA LTS-021 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.334560694541874 73 0.234945795912042 0 NA NA -5.78526397923458 LTS-021 chrX 2699993 2700027 35 * XG 0.365 1 NA 1.63 1 NA NA NA NA NA LTS-021 chrX 2700028 12632938 9932911 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.10550175724944 71 0.135180084075964 0.643921974482862 2840 0.401891090418708 1 1 0 -8.19055197994318 LTS-021 chrX 12632939 13338066 705128 * c(GS1-600G8.3, FAM9C, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.102141097833853 13 0.152662817665062 0.459087996124473 626 0.338353016187146 0 0 0 -8.07730074474577 LTS-021 chrX 13338067 13338156 90 * ATXN3L NA 0 NA 0.567 1 NA NA NA NA NA LTS-021 chrX 13338157 15848463 2510307 * c(LINC01203, PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, CA5BP1, PIGA, GEMIN8, TMEM27, ACE2, TRAPPC2, BMX, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A) 0.149456599795616 32 0.170869476572598 0.635709783066945 1719 0.366840616900827 1 1 0 -7.4206021334584 LTS-021 chrX 15848464 15851194 2731 * AP1S2 NA 0 NA 0.295967494475497 63 0.103862267988551 0 NA NA -5.79945723736614 LTS-021 chrX 15851195 15851509 315 * AP1S2 NA 0 NA 0.509 1 NA NA NA NA NA LTS-021 chrX 15851510 23019435 7167926 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, GRPR, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RPS6KA3, RS1, SCML1, MAGEB17, SMS, CDKL5, LOC729609, S100G, AP1S2, REPS2, SYAP1) 0.0758218715462696 55 0.127641187425034 0.6442882211914 3915 0.391011588305647 1 1 0 -8.63408847554959 LTS-021 chrX 23019436 23096437 77002 * c(PTCHD1-AS, DDX53) NA 0 NA 0.295309684968844 51 0.120332288301366 0 NA NA -6.43193239694634 LTS-021 chrX 23096438 23352114 255677 * PTCHD1-AS NA 0 NA 0.73 1 NA NA NA NA NA LTS-021 chrX 23352115 24330056 977942 * c(ZFX-AS1, PRDX4, PTCHD1, SUPT20HL2, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.131111929584693 21 0.152487860562891 0.662489923530852 976 0.380933565554573 2 2 0 -7.50726694934316 LTS-021 chrX 24330057 24382354 52298 * c(SUPT20HL1, SUPT20HL2) NA 0 NA 0.326238896665988 69 0.185556059321422 0 NA NA -5.89617251114938 LTS-021 chrX 24382355 24382511 157 * SUPT20HL1 NA 0 NA 0.495 1 NA NA NA NA NA LTS-021 chrX 24382512 26157045 1774534 * c(SUPT20HL1, ARX, MAGEB18, PDK3, POLA1, SCARNA23, PCYT1B) 0.200812495401597 5 0.118533539557376 0.654915381593912 517 0.373182312308479 2 2 0 -7.36996705279938 LTS-021 chrX 26157046 26157057 12 * MAGEB18 NA 0 NA 0.17 1 NA NA NA NA NA LTS-021 chrX 26157058 27481361 1324304 * c(PPP4R3CP, VENTXP1, MAGEB6, MAGEB18, MAGEB5) 0.0552414598586221 3 0.137986714336321 0.369042807986432 163 0.22371144200905 0 0 0 -9.68083539710182 LTS-021 chrX 27481362 37314990 9833629 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, MAGEB16, FAM47A, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, DCAF8L2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, CXorf21, TMEM47) 0.123411206322911 41 0.168637347221927 0.51421663094437 1955 0.311454234046175 0 0 0 -8.00304233223102 LTS-021 chrX 37314991 47695547 10380557 * c(SNORA11C, LOC100132831, UXT-AS1, MIR4769, ATP6AP2, FUNDC1, CYBB, CXorf38, DDX3X, ELK1, HYPM, GPR82, GPR34, LINC01281, LANCL3, MPC1L, ARAF, LOC392452, CXXC1P1, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, OTC, CDK16, CFP, NDUFB11, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NYX, RP2, RPGR, DUSP21, ZNF674, SYN1, DYNLT3, TIMP1, TSPAN7, LINC01545, UBA1, KDM6A, XK, ZNF41, ZNF157, CXorf36, EFHC2, PPP1R2P9, NA NA NA NA NA NA NA NA NA LTS-021 USP11, USP9X, RBM10, SRPX, UXT, SLC9A7, INE1, CASK, RGN, MED14, SYTL5, JADE3) 0.0952100644822402 93 0.14096936079362 0.667778804615925 5026 0.363657388123315 1 1 0 -8.31614050826634 LTS-021 NA NA NA NA LTS-021 chrX 47695548 47757771 62224 * ZNF81 0 1 NA 0.678768118589256 43 0.404036025169231 1 1 0 -5.76555673601621 LTS-021 chrX 47757772 47765261 7490 * ZNF81 NA 0 NA 0.673906424537541 6 0.199002931301694 1 NA NA -5.76486942009035 LTS-021 chrX 47765262 48317478 552217 * c(SSX3, SSX6, SSX9, ZNF81, SPACA5, ZNF630, SSX1, SSX5, ZNF182, SLC38A5) 0 10 0 0.504850546867404 425 0.496752385430239 0 0 0 -Inf LTS-021 chrX 48317479 48317885 407 * SLC38A5 NA 0 NA 0.85 1 NA NA NA NA NA LTS-021 chrX 48317886 49158041 840156 * c(HDAC6, PQBP1, TIMM17B, EBP, PIM2, WDR45, PRAF2, FTSJ1, GATA1, GPKOW, PCSK1N, CCDC22, ERAS, KCND1, GLOD5, PRICKLE3, TBC1D25, FOXP3, PLP2, OTUD5, GRIPAP1, RBM3, WDR13, PORCN, SUV39H1, SYP, TFE3, SLC35A2, WAS, CACNA1F, MAGIX, PPP1R3F, CCDC120, SLC38A5) 0.0323927028829525 35 0.0998559214168935 0.713551339020271 2568 0.451144211444228 5 5 0 -8.76576462193671 LTS-021 chrX 49158042 49161221 3180 * NA NA 0 NA 0.527 1 NA NA NA NA NA LTS-021 chrX 49161222 53108329 3947108 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, BMP15, MAGED1, PAGE4) 0.0475925582644662 22 0.107918610104682 0.542511669971808 1309 0.311348827331096 1 1 0 -10.0091681126686 LTS-021 chrX 53108330 54839930 1731601 * c(HUWE1, MAGED2, RIBC1, FGD1, IQSEC2, PHF8, HSD17B10, ITIH6, MIRLET7F2, MIR98, GPR173, GNL3L, FAM120C, TSPYL2, WNK3, KDM5C, SMC1A, TSR2) 0.0180656010728679 41 0.097952296752166 0.674447704392784 2515 0.407706764344787 3 3 0 -9.73107519580049 LTS-021 chrX 54839931 55171811 331881 * c(MAGED2, PAGE2, ALAS2, APEX2, PAGE2B, PFKFB1, SNORA11, TRO, FAM104B) 0 8 0 0.538961246367309 432 0.366041999242227 0 0 0 -Inf LTS-021 chrX 55171812 55172471 660 * FAM104B 0.204 1 NA 0.407620116768747 13 0.0724805897977927 0 0 0 -5.76637857889539 LTS-021 chrX 55172472 57932969 2760498 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) 0.230663693370449 19 0.141513766817333 0.511847007578121 774 0.309029785577429 0 0 0 -7.25778941435334 LTS-021 chrX 57932970 57937169 4200 * ZXDA NA 0 NA 0.483905811438152 81 0.346823594733976 0 NA NA -5.76441214934618 LTS-021 chrX 61999880 62567779 567900 * SPIN4 0.141 1 NA 0.42380550762737 31 0.276572458374262 0 0 0 -5.83085167746257 LTS-021 chrX 62567780 70260681 7692902 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, SPIN4, ASB12, AWAT1, AWAT2, DLG3, EDA, EFNB1, ARHGEF9, KIF4A, FAM155B, YIPF6, SNX12, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, GDPD2, MTMR8, ZC4H2, TEX11, EDA2R, PJA1, LAS1L, FRMD8P1, SLC7A3, LINC01278, STARD8, HEPH) 0.0481631156484969 58 0.112728849040202 0.580905614539811 3422 0.367888224883417 1 1 0 -9.55923629831338 LTS-021 chrX 70260682 70276267 15586 * SNX12 NA 0 NA 1.156 1 NA NA NA NA NA LTS-021 chrX 70276268 70514393 238126 * c(CXorf65, GJB1, SNX12, IL2RG, FOXO4, NONO, NLGN3, BCYRN1, ZMYM3, MED12) 0.0636020081141662 15 0.12771814205321 0.732327367701778 789 0.362027990211356 6 6 0 -7.61885469672104 LTS-021 chrX 70514394 71934101 1419708 * c(ITGB1BP2, INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, CITED1, NONO, PHKA1, PIN4, ERCC6L, HDAC8, BCYRN1, RPS4X, TAF1, OGT, ACRC) 0.0706768712737021 18 0.136300813514468 0.598302654110398 1501 0.388894078982953 2 2 0 -8.47103730956646 LTS-021 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.236 1 NA NA NA NA NA LTS-021 chrX 72066651 72225053 158403 * c(PABPC1L2B, FAM226B) NA 0 NA 0.168528239856425 41 0.110140863243837 0 NA NA -9.80998080841777 LTS-021 chrX 72225054 72225111 58 * PABPC1L2B NA 0 NA 0.557 1 NA NA NA NA NA LTS-021 chrX 72225112 76762029 4536918 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, UPRT, MAGEE2, ZDHHC15, ABCB7, TTC3P1, PABPC1L2A, KIAA2022, ZCCHC13, MIR374A, NAP1L2, MIR384, RLIM, PBDC1, CHIC1, ATRX, JPX, MAGEE1, PABPC1L2B, NAP1L6, SLC16A2, MIR545, MIR421, XIST, FGF16, TSIX) 0.0321023122603901 33 0.0983986653795916 0.553190625677411 1802 0.318199269581522 1 1 0 -10.4757279222408 LTS-021 chrX 76762030 76762034 5 * ATRX NA 0 NA 0.696 1 NA NA NA NA NA LTS-021 chrX 76762035 77528012 765978 * c(COX7B, PGAM4, TAF9B, PGK1, ATP7A, ATRX, MAGT1) 0 12 0 0.699350897865957 892 0.475569041732559 0 0 0 -Inf LTS-021 chrX 77528013 77528088 76 * character(0) NA 0 NA 0.529 1 NA NA NA NA NA LTS-021 chrX 77528089 79826405 2298317 * c(MIR4328, CYSLTR1, FAM46D, ZCCHC5, P2RY10, LPAR4, TBX22, GPR174, ITM2A) 0.000915945055092898 9 0.0113333333333333 0.417519428380424 373 0.302028199981613 0 0 0 -22.8951239976087 LTS-021 chrX 79826406 79830293 3888 * character(0) NA 0 NA 1.197 1 NA NA NA NA NA LTS-021 chrX 79830294 85969699 6139406 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, CYLC1, BRWD3, RPS6KA6, SATL1, POU3F4, SH3BGRL, ZNF711, HMGN5, POF1B) 0 17 0 0.557070122908374 1387 0.339033538622241 0 0 0 -Inf LTS-021 chrX 85969700 86085064 115365 * DACH2 0.5 1 NA 0.540518836132012 83 0.239657530658178 0 0 0 -5.78184296227236 LTS-021 chrX 86085065 86924883 839819 * c(DACH2, KLHL4) 0.0763372652119752 7 0.196634541363268 0.508042754529558 198 0.347446069431517 0 0 0 -7.77883172096554 LTS-021 chrX 88008310 90693597 2685288 * c(PABPC5, CPXCR1, TGIF2LX) 0.35758787847868 2 0.11879393923934 0.355719112995742 129 0.207925334014867 0 0 0 -8.96273893887055 LTS-021 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.178 1 NA NA NA NA NA LTS-021 chrX 91066177 91138406 72230 * PCDH11X 0.106531494162013 4 0.170437427423282 0.209206895101288 136 0.381880860637363 5 5 0 -7.73249930751665 LTS-021 chrX 91138407 91873776 735370 * PCDH11X NA 0 NA 0.582896510161342 58 0.451040125149479 1 NA NA -5.77876621976251 LTS-021 chrX 91873777 91878172 4396 * PCDH11X 0.380788663233744 2 0.0190918830920368 0.264091895141478 118 0.463812902882398 0 0 0 -7.48938768769111 LTS-021 chrX 91878173 100626758 8748586 * c(CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, SRPX2, PCDH11X, FAM133A, RPA4, ARL13A, XKRX, XRCC6P5, NAP1L3, TAF7L, PCDH19, TMEM35A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, SYTL4) 0.113765952521564 23 0.150132958201522 0.626023153859593 1922 0.397884936655106 1 1 0 -7.88722708891427 LTS-021 chrX 100626759 101439808 813050 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, GLA, HNRNPH2, BEX5, ARMCX1, ARMCX3, ARMCX6, NXF5, RPL36A, BTK, ZMAT1, ARMCX2) 0.144930179147467 13 0.131041439912567 0.50827940021394 714 0.252124314711749 0 0 0 -8.03297095749516 LTS-021 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.209 1 NA NA NA NA NA LTS-021 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.292093543364248 47 0.391687753219579 0 NA NA -5.90679703736911 LTS-021 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.577 1 NA NA NA NA NA LTS-021 chrX 101768565 102930960 1162396 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, GPRASP2, RAB40A, BEX3, RAB40AL, TCEAL5, TCEAL9, BEX1, NXF4, NXF3, BEX4, TCEAL7, ARMCX5, TCEAL4, BHLHB9, BEX2, TCEAL3, TCEAL8, TCEAL1, MORF4L2, GPRASP1) 0.0996191690467043 7 0.144524342981678 0.568965844486096 835 0.389346387508553 1 1 0 -8.13463825497221 LTS-021 chrX 102930961 103036292 105332 * c(TMEM31, MORF4L2-AS1, GLRA4, RAB9B, PLP1, MORF4L2) 0 1 NA 0.534162711475603 113 0.316173169537315 0 0 0 -5.77185952247031 LTS-021 chrX 103036293 114953716 11917424 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, MIR3978, MID2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, AMOT, H2BFWT, DCX, TSC22D3, NRK, ACSL4, KCNE5, IL1RAPL2, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, PAK3, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, NXT2, TEX13B, TEX13A, PRPS1, PSMD10, RGAG1, NA NA NA NA NA NA NA NA NA LTS-021 LRCH2, ZCCHC18, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, ESX1, CAPN6, TMEM164, IRS4, CLDN2, CHRDL1, RIPPLY1, AMMECR1) 0.0359280654597317 82 0.103171976037907 0.564512963750695 5707 0.343741068811806 1 1 0 -10.4884331338486 LTS-021 NA NA NA NA LTS-021 chrX 114953717 115235688 281972 * character(0) NA 0 NA 0.305 1 NA NA NA NA NA LTS-021 chrX 115235689 117106769 1871081 * c(SLC6A14, AGTR2, CT83, KLHL13) NA 0 NA 0.422872167988455 332 0.194206486766165 0 NA NA -6.19687018890947 LTS-021 chrX 117106770 118924065 1817296 * c(MIR1277, SLC25A5-AS1, PGRMC1, DOCK11, ZCCHC12, SLC25A43, SEPT6, SNORA69, SLC25A5, SOWAHD, IL13RA1, WDR44, NKRF, KIAA1210, RPL39, CXorf56, UBE2A, MIR766, LONRF3, KLHL13) 0.0727537658930254 32 0.117098645346287 0.693042461440192 1510 0.388157876420516 2 2 0 -8.5303305063954 LTS-021 chrX 118924066 122753400 3829335 * c(ZBTB33, AKAP14, RHOXF1, NKAPP1, ATP1B4, CT47A11, GLUD2, GRIA3, MCTS1, C1GALT1C1, LAMP2, NDUFA1, TMEM255A, THOC2, RPL39, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, RNF113A, NKAP, CUL4B) 0.107033575238126 13 0.137949033695187 0.551307958315406 1200 0.332443103397864 1 1 0 -8.48583675536742 LTS-021 chrX 122753401 122754622 1222 * THOC2 NA 0 NA 0.736 1 NA NA NA NA NA LTS-021 chrX 122754623 123514204 759582 * c(TENM1, STAG2, XIAP, SH2D1A, THOC2) 0.108833995260676 8 0.184899200338223 0.698860564631675 660 0.449993784568491 3 3 0 -7.29577903850224 LTS-021 chrX 123514205 128602878 5088674 * c(TEX13C, PRR32, TENM1, DCAF12L1, ACTRT1, DCAF12L2, SMARCA1) 0.0295353106478565 9 0.0967007123953995 0.456668975515371 437 0.289828367081566 0 0 0 -10.4046890665261 LTS-021 chrX 128602879 128605159 2281 * SMARCA1 NA 0 NA 0.839 1 NA NA NA NA NA LTS-021 chrX 128605160 135338513 6733354 * c(MIR450B, LINC00633, LINC00629, HS6ST2-AS1, SLC9A6, ENOX2, PLAC1, UTP14A, GPR119, ARHGAP36, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, GPC4, FHL1, FAM127B, GPC3, FIRRE, HPRT1, OR13H1, CCDC160, IGSF1, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, NA NA NA NA NA NA NA NA NA LTS-021 MIR503, RAP2C, BCORL1, SMIM10, SMIM10L2B, SMARCA1, MIR542, CT45A2, XPNPEP2, ZNF75D, MAP7D3, USP26, PHF6, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A) 0.0362127479118048 67 0.0957575995167974 0.603570222232437 4338 0.396911290056716 1 1 0 -10.1406622749098 LTS-021 NA NA NA NA LTS-021 chrX 135338514 135390812 52299 * c(ADGRG4, MAP7D3) NA 0 NA 0.358 1 NA NA NA NA NA LTS-021 chrX 135390813 135432251 41439 * ADGRG4 0 4 0 0.390472636431994 144 0.435715840494388 0 0 0 -Inf LTS-021 chrX 135432252 140983309 5551058 * c(MIR934, LINC00892, FGF13-AS1, MIR320D2, CDR1, MAGEC3, ADGRG4, LINC00889, NA, NA, F9, FGF13, LDOC1, SNORD61, RBMX, HTATSF1, ATP11C, LINC00632, CXorf66, LOC389895, MCF2, VGLL1, MIR504, MIR505, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, BRS3, ZIC3, GPR101, ARHGEF6, CD40LG) 0.06112729201082 22 0.124956442627471 0.545646374964421 1517 0.322305518270247 1 1 0 -9.46947779414891 LTS-021 chrX 140983310 140984301 992 * MAGEC3 NA 0 NA 0.139 1 NA NA NA NA NA LTS-021 chrX 140984302 144900372 3916071 * c(SLITRK4, SPANXN3, MAGEC3, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, SLITRK2, MAGEC1) 0.0773965346506439 18 0.114355382884984 0.409031407838926 474 0.374760049421402 0 0 0 -9.49653977783699 LTS-021 chrX 144900373 144900396 24 * SLITRK2 0 1 NA 1.412 1 NA NA NA NA NA LTS-021 chrX 144900397 148627372 3726976 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, MIR514B, FMR1NB, FMR1, AFF2, IDS, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SLITRK2, TMEM257, CXorf40A) 0.0314563199493756 17 0.126579578549948 0.568314497796364 1051 0.333827187122645 1 1 0 -9.33802255746944 LTS-021 chrX 148627373 148664798 37426 * CXorf40A 0 1 NA 0.180396300547516 53 0.502349916210206 0 0 0 -5.84815314782139 LTS-021 chrX 148664799 149014630 349832 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.0282676458848827 7 0.125862169512073 0.491187482664667 146 0.443930995501692 6 6 0 -8.48365836485406 LTS-021 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.193 1 NA NA NA NA NA LTS-021 chrX 149097210 149101882 4673 * CXorf40B NA 0 NA 0.19828605840826 40 0.114709082979286 0 NA NA -5.92585478511213 LTS-021 chrX 149101883 151825944 2724062 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.0454683064876207 33 0.105028279020173 0.579604146331659 1523 0.385192874186239 1 1 0 -9.69181338745556 LTS-021 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.083 1 NA NA NA NA NA LTS-021 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.135418692510463 7 0.156038304210705 0.278067029869172 114 0.516076583443063 6 6 0 -7.1499912531876 LTS-021 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 0.794 1 NA NA NA NA NA LTS-021 chrX 151995517 154467919 2472403 * c(SMIM9, CMC4, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, F8, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, MTCP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, NA NA NA NA NA NA NA NA NA LTS-021 SNORA56, TAZ, VBP1, ZNF185, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.0901176503341901 76 0.121583877624649 0.657581365158612 5175 0.410201858980187 2 2 0 -8.40338248492078 LTS-021 NA NA NA NA LTS-021 chrX 154467920 154506905 38986 * c(RAB39B, CLIC2, VBP1) NA 0 NA 0.579716188120023 108 0.240858577332915 1 NA NA -5.76745533974259 LTS-021 chrX 154506906 154774986 268081 * c(CLIC2, TMLHE) NA 0 NA 0.435864795687084 115 0.338237104898967 0 NA NA -5.77700590000432 LTS-021 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.126189336531122 25 0.0829339697188874 0 NA NA -16.5504530656408 LTS-021 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.796666177429244 19 0.72345640880332 2 NA NA -5.76618662768573 LTS-021 chr1 65893 878664 812772 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.191 1 NA 0.603657787350613 97 0.376723969085007 1 1 0 -5.80353397988799 LTS-022 chr1 878665 1387876 509212 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, HES4, SCNN1D, TMEM88B, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.197967492103503 63 0.0680577974906855 0.6287430614583 2245 0.369929545310539 1 1 0 -6.83928610779908 LTS-022 chr1 1387877 1389710 1834 * ATAD3C NA 0 NA 1.68 1 NA NA NA NA NA LTS-022 chr1 1389711 1459018 69308 * c(ATAD3C, ATAD3A, ATAD3B) 0.200419039279189 6 0.0513202364245009 1.03451103695515 227 0.830593788561424 6 5 1 -6.76744326598393 LTS-022 chr1 1459019 1459214 196 * ATAD3A NA 0 NA 0.681 1 NA NA NA NA NA LTS-022 chr1 1459215 1562536 103322 * c(MIB2, SSU72, TMEM240, ATAD3A, FNDC10) 0.262996630129117 4 0.0393615717843347 0.691962079288447 278 0.396066381497244 4 3 1 -7.22502693505017 LTS-022 chr1 1562537 1575836 13300 * c(MIB2, MMP23B, CDK11B) 0.424 1 NA 0.74041388017135 93 0.325555043716133 2 2 0 -5.76578257129378 LTS-022 chr1 1575837 1608309 32473 * c(SLC35E2B, CDK11B) 0.416438591627899 8 0.0825096314724183 0.666008465822479 206 0.469090624551536 2 1 1 -6.74228969181328 LTS-022 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.004 1 NA NA NA NA NA LTS-022 chr1 1630372 1660634 30263 * c(CDK11A, SLC35E2B, MMP23A, CDK11B, SLC35E2) 0.44466735874621 11 0.0378914718157481 0.331601933566377 210 0.270761873875362 0 0 0 -7.22979648246755 LTS-022 chr1 1660635 1660759 125 * c(SLC35E2B, SLC35E2) NA 0 NA 0.898 1 NA NA NA NA NA LTS-022 chr1 1660760 1661298 539 * c(SLC35E2B, SLC35E2) 0.389189724300865 2 0.0707106781186547 0.667965536867742 6 0.142260324757116 5 3 2 -6.75055368102673 LTS-022 chr1 1661299 1666162 4864 * c(SLC35E2B, SLC35E2) 0 1 NA 0.513535150809402 33 0.563881839720581 1 1 0 -5.76443752662412 LTS-022 chr1 1666163 16778533 15112371 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, RER1, PARK7, CTRC, ACOT7, FHAD1, LOC115110, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, TPRG1L, FAM213B, ARHGEF19, CORT, ACTRT2, C1orf127, PHF13, CCDC27, C1orf64, SLC2A7, CALML6, DFFA, DFFB, MEGF6, EPHA2, TMEM201, FAAP20, TMEM51-AS1, NA NA NA NA NA NA NA NA NA LTS-022 ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, ICMT, MTOR, GABRD, CHD5, SZRD1, NPHP4, FBXO2, FBXO6, HSPB7, ARHGEF16, GNB1, LOC284661, SLC25A34, UBIAD1, ZBTB48, C1orf174, TMEM52, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, GPR153, HES5, SMIM1, RNF207, TMEM82, HES3, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, LINC00982, PRAMEF11, PRAMEF6, HNRNPCL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 UQCRHL, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, CELA2B, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, HES2, FBLIM1, CASZ1, TMEM51, VPS13D, PANK4, NECAP2, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, RSC1A1, CELA2A, PRDM16, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, SKI, PRAMEF1, PRAMEF2, SLC2A5, NADK, PRAMEF22, NA, SRM, SNORA59B, MIR551A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TNFRSF1B, TP73, SLC35E2B, LINC01346, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, MMEL1, RSG1, NOL9, AGMAT, MORN1, GPR157, SPSB1, TAS1R1, ESPN, CASP9, SLC25A33, DDI2, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, SLC35E2, MFN2) 0.209062778588285 410 0.0882733009321798 0.654275337071772 15978 0.462351289583576 1 1 0 -7.95227909294236 LTS-022 NA NA NA NA LTS-022 chr1 16778534 16862454 83921 * c(CROCCP3, NECAP2) 0.46 1 NA 0.718432988769247 45 0.442631361543918 2 2 0 -5.77141305721682 LTS-022 chr1 16862455 16975360 112906 * c(MST1P2, NBPF1, CROCCP2) 0.35931570450905 20 0.0766158393682747 0.58530624053023 98 0.570007614345959 3 2 1 -6.82785081647053 LTS-022 chr1 16975361 16978916 3556 * MST1P2 0.297013198102772 4 0.132692627275721 0.155636076890689 82 0.156515474624872 1 1 0 -7.06524703838273 LTS-022 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.891 1 NA NA NA NA NA LTS-022 chr1 17009684 17012093 2410 * character(0) 0.320098241109801 5 0.111156196408477 0.578351302248193 60 0.226241723636743 7 5 2 -6.79771315091405 LTS-022 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.075 1 NA NA NA NA NA LTS-022 chr1 17017583 17046601 29019 * ESPNP 0.385935601620175 14 0.0647149710077002 1.5440497526218 80 0.724916828053354 5 3 2 -6.74244415189928 LTS-022 chr1 17046602 17081541 34940 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.35 1 NA NA NA NA NA LTS-022 chr1 17081542 17198553 117012 * c(MST1L, CROCC) 0.304465388926135 22 0.0993890536361222 0.713207795087998 180 0.52730261842385 4 3 1 -6.87109623028022 LTS-022 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.882 1 NA NA NA NA NA LTS-022 chr1 17248433 17273493 25061 * CROCC 0.397278070117512 6 0.0635253230347289 1.73561799499413 73 0.722310874900828 5 3 2 -6.7348413468036 LTS-022 chr1 17273494 17279907 6414 * CROCC NA 0 NA 1.64400897459813 17 0.507160666038358 5 NA NA -5.76448284182811 LTS-022 chr1 17279908 17279911 4 * CROCC NA 0 NA 0.851 1 NA NA NA NA NA LTS-022 chr1 17279912 17295679 15768 * CROCC 0.159 1 NA 0.81346113946605 55 0.43013837097127 2 2 0 -5.76449584442992 LTS-022 chr1 17295680 18691737 1396058 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.201340740303639 33 0.102948087462183 0.73243987001262 1184 0.500268870430471 2 2 0 -7.00612512698713 LTS-022 chr1 18691738 24255656 5563919 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, IFFO2, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, NA NA NA NA NA NA NA NA NA LTS-022 HP1BP3, PAX7, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PITHD1, KIF17, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, CAPZB, USP48, NBPF3, IGSF21, AKR7A2, ALDH4A1, EIF4G3, CDA, ZBTB40, CDC42) 0.212682478175806 210 0.0854508987359548 0.636918204812921 7625 0.388348053067208 1 1 0 -7.25969207336381 LTS-022 NA NA NA NA LTS-022 chr1 24255657 24255673 17 * character(0) 0.147 1 NA 0.224 1 NA NA NA NA NA LTS-022 chr1 24255674 24297763 42090 * PNRC2 0.260641077907829 4 0.0336687293097517 0.341138509929495 161 0.219013436228116 1 1 0 -7.63775211430023 LTS-022 chr1 24297764 24298289 526 * character(0) NA 0 NA 0.746 1 NA NA NA NA NA LTS-022 chr1 24298290 25599178 1300889 * c(RCAN3AS, SRRM1, RCAN3, MYOM3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.227716205075269 27 0.0864821013051478 0.607865825091041 1435 0.358367477072121 1 1 0 -6.81679045604632 LTS-022 chr1 25599179 25656954 57776 * c(RSRP1, RHD) NA 0 NA 0.0603223599693878 73 0.0739758254766159 0 NA NA -10.5689861852425 LTS-022 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.422 1 NA NA NA NA NA LTS-022 chr1 25666924 35575953 9909030 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR3605, TMEM35B, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, SMIM12, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, GJB4, HMGB4, RNF19B, A3GALT2, COL16A1, DCDC2B, ZNF362, LINC01225, PDIK1L, PAQR7, PHC2, FAM76A, TXLNA, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, RNU11, NA NA NA NA NA NA NA NA NA LTS-022 GJA4, GJB3, GJB5, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HDAC1, HMGN2, HPCA, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, TRIM62, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, RBBP4, RHCE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, MARCKSL1, ZBTB8A, LOC653160, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, ZSCAN20, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, ZMYM1, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, C1orf94, SNHG12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.216341388977638 186 0.0858536932258099 0.618725432810375 11866 0.354244274802095 1 1 0 -7.46007828003591 LTS-022 NA NA NA NA LTS-022 chr1 35575954 36039627 463674 * c(NCDN, TFAP2E, PSMB2, SFPQ, ZMYM1, KIAA0319L, ZMYM4) 0 1 NA 0.926571091164411 634 0.466319066718367 2 2 0 -5.77458376398873 LTS-022 chr1 36039628 36056263 16636 * c(TFAP2E, PSMB2) 0.454 1 NA 1.69603187394467 37 0.877032446042569 5 5 0 -5.76442943047157 LTS-022 chr1 36056264 53453861 17397598 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR761, MIR4255, MIR3659, SLFNL1-AS1, MKNK1-AS1, GJA9-MYCBP, MIR5581, MIR5584, LINC00853, TSPAN1, PDZK1IP1, ZMPSTE24, CDKN2C, AKR1A1, TESK2, PPIE, PPIH, CAP1, LRRC41, SF3A3, EBNA1BP2, KIF2C, FAF1, MED8, KTI12, TOE1, ERMAP, OSBPL9, PLK3, CCDC163, DMBX1, TMCO2, ZNF684, C1orf122, OSCP1, C1orf216, KLF17, TMEM125, COL8A2, COL9A2, CSF3R, KNCN, MOB3C, MANEAL, NA NA NA NA NA NA NA NA NA LTS-022 CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, AGO3, AGO4, ELAVL4, CYP4Z1, SLC5A9, CC2D1B, SLFNL1, EPS15, FAAH, FHL3, FOXJ3, SCMH1, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, SZT2, MACF1, MMACHC, CYP4X1, MYCBP, HEYL, AGO1, BEST4, SNORD55, RNF11, TRAPPC3, TEKT2, CYP4A22, C1orf185, RSPO1, EPHA10, RIMKLA, GPX7, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TFAP2E, C1orf228, ZFP69, TCTEX1D4, FAM159A, BMP8A, INPP5B, IPP, SVBP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, ZYG11A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, NRDC, YBX1, ORC1, PRDX1, ZNF691, TXNDC12, UTP11, TMEM69, HPCAL4, CMPK1, ATP6V0B, LURAP1, POU3F1, SPATA6, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, RNF220, EVA1B, ECHDC2, PPT1, POMGNT1, MAP7D1, DMAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PSMB2, ZSWIM5, PTPRF, RAB3B, HIVEP3, RLF, GPBP1L1, RPS8, SCP2, DMRTA2, CLSPN, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, ATPAF1, MEAF6, EXO5, ELOVL1, ST3GAL3, STIL, MRPS15, SLC2A1, ZFP69B, COA7, SLC6A9, BMP8B, SNORA55, TAL1, TIE1, LINC01137, PPIEL, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, BEND5, YRDC, ZYG11B, PPCS, SH3D21, SNIP1, ZC3H12A, HYI, STK40, ZMYND12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RAD54L, NT5C1A, FOXD2-AS1, HPDL, AGBL4, MFSD2A, PRPF38A, LSM10, PIK3R3, MKNK1, PTCH2, B4GALT2, PABPC4, EIF2B3, ARTN, KCNQ4, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20, THRAP3) 0.404685448140796 339 0.12428070703227 0.95431746829799 19142 0.559069978629875 2 1 1 -7.17145281214064 LTS-022 NA NA NA NA LTS-022 chr1 53453862 53457498 3637 * SCP2 NA 0 NA 0.48 1 NA NA NA NA NA LTS-022 chr1 53457499 53459902 2404 * SCP2 NA 0 NA 0.367342624115275 47 0.127315130525341 1 NA NA -5.77788542392503 LTS-022 chr1 53459903 53480577 20675 * SCP2 NA 0 NA 0.666 1 NA NA NA NA NA LTS-022 chr1 53480578 55518467 2037890 * c(LOC100507564, MROH7-TTC4, MIR4781, LRRC42, TCEANC2, PODN, CPT2, GLIS1, SLC25A3P1, LEXM, DHCR24, DIO1, TMEM61, CDCP2, SSBP3, PCSK9, PARS2, ACOT11, FAM151A, MROH7, LDLRAD1, MAGOH, MRPL37, HSPB11, YIPF1, C1orf123, TTC22, NDC1, CYB5RL, SCP2, DMRTB1, SLC1A7, TTC4, LRP8, BSND, TMEM59) 0.399111401366861 77 0.127146355946544 1.04245474805962 2521 0.655669161839643 3 2 1 -6.81301608020201 LTS-022 chr1 55518468 55529608 11141 * PCSK9 NA 0 NA 1.52492580268464 46 0.658515310016836 4 NA NA -5.76444153588275 LTS-022 chr1 55529609 56197506 667898 * c(LOC100507634, MIR4422, USP24, PCSK9) 0 1 NA 0.887636122183763 413 0.467346881544549 2 2 0 -5.76834431231029 LTS-022 chr1 56197507 57395292 1197786 * c(C1orf168, PRKAA2, C8A, C8B, PLPP3) 0.196383164118483 9 0.214282199706628 0.980967805163294 504 0.686585170795271 2 2 0 -6.80605201363976 LTS-022 chr1 57395293 57417905 22613 * C8B 0.425 1 NA 0.852580817536833 41 0.423935786670001 2 2 0 -5.76441287695802 LTS-022 chr1 57417906 65901701 8483796 * c(LINC01135, MIR3671, MIR4794, MIR4711, PATJ, MYSM1, OMA1, C1orf87, UBE2U, CYP2J2, DAB1, KANK4, LINC00466, AK4, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, JUN, LEPR, MIR101-1, TACSTD2, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, LEPROT, RAVER2, FGGY, CACHD1, HSD52, C8B, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.407696287699218 80 0.108437554216964 0.922134529634393 3669 0.522824920031847 2 1 1 -6.86316806545317 LTS-022 chr1 65901702 66031186 129485 * LEPR NA 0 NA 0.547 1 NA NA NA NA NA LTS-022 chr1 66031187 75685577 9654391 * c(ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, IL23R, GADD45A, TCTEX1D1, SLC44A5, SLC35D1, NEGR1, SERBP1, IL12RB2, LEPR, C1orf141, MIR186, LHX8, TNNI3K, PDE4B, PIN1P1, LRRC40, DEPDC1, GNG12, PTGER3, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, FPGT, DIRAS3, SRSF11, ZRANB2) 0.403145370901707 74 0.11427645393077 0.771644811749837 4325 0.457198452339452 2 1 1 -6.96895876232008 LTS-022 chr1 75685578 75687981 2404 * SLC44A5 NA 0 NA 0.825 1 NA NA NA NA NA LTS-022 chr1 75687982 94344820 18656839 * c(MIR760, LOC100129046, CCDC18-AS1, PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GLMN, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, GBP6, HFM1, DR1, SLC44A5, CLCA4, MTF2, USP33, ADGRL2, KIAA1107, LRRC8B, LPAR3, DDAH1, EPHX4, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GBP1, GBP2, GBP3, GFI1, SNORA66, SNORD45B, SNORD45A, GNG5, ZNF326, BTBD8, GTF2B, DNTTIP2, LINC01140, NA NA NA NA NA NA NA NA NA LTS-022 ACADM, CCDC18, BARHL2, CYR61, MIGA1, GBP7, C1orf146, FAM69A, UOX, GBP1P1, FLJ27354, LINC01555, MSH4, GEMIN8P4, RBMXL1, TMED5, SH3GLB1, ZNHIT6, GIPC2, FNBP1L, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, RABGGTB, SNORD21, RPL5, ADGRL4, LOC646626, BRDT, SNORD45C, TGFBR3, LOC729930, EVI5, TTLL7, RPAP2, RPF1, ST6GALNAC5, CDC7, BCAR3, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CLCA3P, CLCA2, HS2ST1) 0.405765463589374 139 0.111819529760907 0.845877555882237 9047 0.511914139936445 2 1 1 -6.73388228627331 LTS-022 NA NA NA NA LTS-022 chr1 94344821 94350822 6002 * character(0) NA 0 NA 1.964 1 NA NA NA NA NA LTS-022 chr1 94350823 95448446 1097624 * c(CNN3, SLC44A3, ALG14, F3, ABCA4, GCLM, ABCD3, LOC729970, ARHGAP29) 0.425737391304769 19 0.0765223661070401 1.00831662852583 947 0.733894382584592 2 1 1 -6.79631825605148 LTS-022 chr1 95448447 103354138 7905692 * c(LINC01349, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, OLFM3, LRRC39, COL11A1, TMEM56, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, SLC35A3, RWDD3, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PTBP2, MFSD14A, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.412460839188471 50 0.101867911672771 0.769888238785569 2534 0.441802029021892 2 1 1 -6.94948288442857 LTS-022 chr1 103354139 103354428 290 * COL11A1 0.383 1 NA 1.29635826224204 7 0.303801391889974 4 4 0 -5.76443596318487 LTS-022 chr1 103354429 107951560 4597132 * c(LOC100129138, COL11A1, NTNG1, AMY2A, AMY2B, PRMT6, RNPC3, ACTG1P4) 0.112311755206899 9 0.200254490863778 0.809515387091182 515 0.555886443099941 2 2 0 -6.76354377880083 LTS-022 chr1 107951561 107951858 298 * NTNG1 0.5 1 NA 0.843543291680012 7 0.231782122651753 2 2 0 -5.76441020574625 LTS-022 chr1 107951859 109143376 1191518 * c(VAV3-AS1, VAV3, NBPF4, NTNG1, FAM102B, SLC25A24, NBPF6) 0.423197467826314 6 0.0829282822684758 0.8036730917061 468 0.513852385986567 2 1 1 -6.75673809599782 LTS-022 chr1 109143377 109148817 5441 * FAM102B NA 0 NA 1.268 1 NA NA NA NA NA LTS-022 chr1 109148818 110768991 1620174 * c(AHCYL1, HENMT1, ATXN7L2, C1orf194, CSF1, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, MYBPHL, KCNC4, SLC6A17, MIR197, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, SCARNA2, STXBP3, TAF13, EPS8L3, GPR61, PSRC1, STRIP1) 0.414154295637784 76 0.120117073738535 0.915645931563784 3671 0.608292390179591 2 1 1 -6.74958700457397 LTS-022 chr1 110768992 110774765 5774 * KCNC4 NA 0 NA 0.273 1 NA NA NA NA NA LTS-022 chr1 110774766 111727152 952387 * c(LAMTOR5-AS1, CEPT1, LAMTOR5, DRAM2, KCNA2, KCNA3, KCNA10, KCNC4, LOC440600, LRIF1, CYMP, RBM15, PROK1, SLC16A4, CD53) 0.396634642381324 8 0.0462755720810513 0.683935682783679 716 0.394997223198755 2 1 1 -6.94349671854151 LTS-022 chr1 111727153 118319410 6592258 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, BCAS2, CEPT1, AP4B1, PHTF1, MAN1A2, CHI3L2, DDX20, MAB21L3, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, IGSF3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, FAM46C, ST7L, SLC22A15, CTTNBP2NL, FAM212B, OLFML3, PTGFRN, RAP1A, NA NA NA NA NA NA NA NA NA LTS-022 LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, CASQ2, TTF2, ATP1A1-AS1, CD2, CD101, CD58, LRIG2) 0.41680934409741 137 0.0982770649449988 0.872312204850633 6383 0.518269764388682 2 1 1 -6.74854029409984 LTS-022 NA NA NA NA LTS-022 chr1 118319411 118321106 1696 * character(0) NA 0 NA 0.327154765103173 39 0.153393265585962 0 NA NA -5.76886489004463 LTS-022 chr1 118321107 118412057 90951 * GDAP2 NA 0 NA 0.769 1 NA NA NA NA NA LTS-022 chr1 118412058 120529742 2117685 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.406425464600531 45 0.120773454337976 0.799965133546503 1590 0.366995706945046 2 1 1 -6.76465848004809 LTS-022 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.198 1 NA NA NA NA NA LTS-022 chr1 120534071 120539329 5259 * NOTCH2 0.399269087570287 2 0.0431335136523794 0.360685199858497 126 0.599081769546674 5 3 2 -6.7647294430659 LTS-022 chr1 120539330 121116733 577404 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.280484187305792 13 0.0509613981613937 0.776199122977862 99 0.417591849282401 4 3 1 -7.45669313964778 LTS-022 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.466752784184594 61 0.241534296515925 1 NA NA -5.80970391572146 LTS-022 chr1 143912360 144013853 101494 * FAM72D 0.319 1 NA 0.598556247595688 5 0.806702423449936 1 1 0 -5.76531911776486 LTS-022 chr1 144013854 145210034 1196181 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.344260366901669 67 0.097923337869491 0.738318168369759 690 0.532422149905523 2 1 1 -7.03664019147957 LTS-022 chr1 145210035 145248753 38719 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 0.201 1 NA NA NA NA NA LTS-022 chr1 145248754 145290585 41832 * c(NBPF10, NBPF20, NOTCH2NL) 0.347116482658695 13 0.0846978793667868 0.397085665106141 174 0.53678770177321 3 2 1 -6.84811289079856 LTS-022 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 0.974 1 NA NA NA NA NA LTS-022 chr1 145414668 145459851 45184 * c(NBPF10, NBPF20, TXNIP, HFE2, POLR3GL) 0.201213370213753 2 0.3153696244092 0.742394785242229 170 0.374183153323499 1 1 0 -6.75400447391721 LTS-022 chr1 145459852 145507823 47972 * c(NBPF10, NBPF20, LIX1L, ANKRD34A, POLR3GL, RBM8A) NA 0 NA 0.967023274112071 151 0.471289436806124 2 NA NA -5.76666654905402 LTS-022 chr1 145507824 145508044 221 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.378 1 NA NA NA NA NA LTS-022 chr1 145508045 145511387 3343 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.464586387530976 74 0.229913041527005 1 NA NA -5.76531908777421 LTS-022 chr1 145511388 145536082 24695 * c(NBPF10, NBPF20, ITGA10, PEX11B, RBM8A) 0.46 1 NA 0.866089145528935 179 0.367287410867715 2 2 0 -5.76446207748589 LTS-022 chr1 145536083 145706867 170785 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115, ITGA10) 0.423187759244352 15 0.126824851102388 0.954370992382988 616 0.575173477799465 2 1 1 -6.74428282936593 LTS-022 chr1 145706868 145746977 40110 * c(NBPF10, NBPF20, CD160, PDZK1) NA 0 NA 0.636 1 NA NA NA NA NA LTS-022 chr1 145746978 146511357 764380 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.44038600818281 5 0.0776189409873647 0.541011506859044 136 0.402468780572496 2 1 1 -7.34810229281326 LTS-022 chr1 146511358 146514458 3101 * c(NA, NA, NA, LOC728989) NA 0 NA 1.19 1 NA NA NA NA NA LTS-022 chr1 146514459 147381442 866984 * c(LINC00624, PDIA3P1, FMO5, GJA5, GJA8, ACP6, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.362255421331982 18 0.173760907402029 0.851616588415867 689 0.524001529748424 2 1 1 -6.77728295814034 LTS-022 chr1 147381443 147400493 19051 * c(NA, NA, NA) NA 0 NA 0.409 1 NA NA NA NA NA LTS-022 chr1 147400494 149760175 2359682 * c(FCGR1CP, MIR5087, FCGR1A, NBPF14, NBPF15, LINC01138, LOC388692, HIST2H2BF, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.478 1 NA 0.440603633485524 134 0.320623125559043 1 1 0 -6.30700252202717 LTS-022 chr1 149760176 149761605 1430 * c(FCGR1A, HIST2H2BF) NA 0 NA 1.185 1 NA NA NA NA NA LTS-022 chr1 149761606 152009532 2247927 * c(LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, NA NA NA NA NA NA NA NA NA LTS-022 PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, HIST2H3D, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.404037051544986 60 0.116675555754984 0.975726496446133 5465 1.59128762542764 2 1 1 -6.7449531779709 LTS-022 NA NA NA NA LTS-022 chr1 152009533 152056513 46981 * character(0) NA 0 NA 0.665 1 NA NA NA NA NA LTS-022 chr1 152056514 152322880 266367 * c(TCHHL1, RPTN, FLG, HRNR, FLG2, TCHH) 0.402712780087803 16 0.131542372767612 0.725573128261186 524 0.32372678765407 2 1 1 -6.77121871011609 LTS-022 chr1 152322881 152329620 6740 * FLG2 NA 0 NA 0.334155801303471 122 0.148916077610779 0 NA NA -5.7857021577265 LTS-022 chr1 152329621 152760123 430503 * c(C1orf68, LCE4A, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, FLG2, KPRP, CRNN, CRCT1, LCE3D) 0.349777950742555 9 0.203249914582461 0.764886977223069 317 0.480261845000836 2 1 1 -6.79629954414129 LTS-022 chr1 152760124 152770879 10756 * c(LCE1D, LCE1E) NA 0 NA 0.223577371081045 39 0.27485947335769 0 NA NA -5.76471269333444 LTS-022 chr1 152770880 152770890 11 * character(0) NA 0 NA 0.883 1 NA NA NA NA NA LTS-022 chr1 152770891 153611027 840137 * c(PGLYRP3, S100A16, LELP1, SPRR4, CHTOP, S100A7A, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PGLYRP4, S100A14, PRR9, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.402695115624899 21 0.145258603548161 0.789714052822206 840 0.448672821224037 2 1 1 -6.74682791814986 LTS-022 chr1 153611028 153614660 3633 * CHTOP NA 0 NA 1.719 1 NA NA NA NA NA LTS-022 chr1 153614661 155447748 1833088 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, IL6R, ILF2, KCNN3, C1orf189, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, UBE2Q1, ASH1L, LENEP, SLC50A1, ATP8B2, PBXIP1, GATAD2B, HCN3, RAB13, RPS27, POU5F1P4, NA NA NA NA NA NA NA NA NA LTS-022 SHC1, INTS3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.431076360081108 85 0.0938649247037244 0.99531154276943 5482 0.55345209340815 2 1 1 -6.85574114013309 LTS-022 NA NA NA NA LTS-022 chr1 155447749 155838491 390743 * c(MSTO2P, SYT11, GON4L, MSTO1, YY1AP1, ASH1L, ASH1L-AS1, DAP3) NA 0 NA 0.751255731826143 716 0.521890300846369 2 NA NA -5.77688155562818 LTS-022 chr1 155838492 156005142 166651 * c(KIAA0907, SYT11, RXFP4, UBQLN4, RIT1, SSR2, SCARNA4, SNORA80E, ARHGEF2) NA 0 NA 1.18638290620571 535 0.620418493768625 3 NA NA -5.76462767191449 LTS-022 chr1 156005143 156005153 11 * UBQLN4 NA 0 NA 0.55 1 NA NA NA NA NA LTS-022 chr1 156005154 156006772 1619 * UBQLN4 0.409262371698383 2 0.0473761543394987 0.509264307102208 41 0.206407724614385 2 1 1 -6.7389634588673 LTS-022 chr1 156006773 156006782 10 * UBQLN4 NA 0 NA 1.203 1 NA NA NA NA NA LTS-022 chr1 156006783 156146217 139435 * c(LAMTOR2, LMNA, UBQLN4, RAB25, SEMA4A, MEX3A) 0.429096629999587 3 0.0311929479209644 1.38445395083303 347 0.674830638393738 4 2 2 -6.95931327601644 LTS-022 chr1 156146218 158326033 2179816 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, SMG5, HDGF, CYCSP52, INSRR, PEAR1, VHLL, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GPATCH4, KIRREL, PRCC, RHBG, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, CCT3, MIR765, FCRL2, MRPL24, PAQR6, ISG20L2, FCRL5, FCRL4, TMEM79, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, SLC25A44, ARHGEF11) 0.414772615695387 50 0.134693447865734 0.970042303078888 4003 0.515599803767427 2 1 1 -6.82239270728713 LTS-022 chr1 158326034 158326277 244 * CD1E NA 0 NA 0.687 1 NA NA NA NA NA LTS-022 chr1 158326278 158592935 266658 * c(OR10T2, OR6P1, OR10X1, OR10Z1, OR10R2, OR10K2, OR10K1, OR6Y1, SPTA1, CD1E) 0.460435959914154 8 0.0355326811340128 0.67266695729712 302 0.349115286389308 2 1 1 -7.83185265196596 LTS-022 chr1 158592936 158597507 4572 * SPTA1 0.393 1 NA 0.609661398104721 17 0.243511263177122 1 1 0 -5.76504266138346 LTS-022 chr1 158597508 158647522 50015 * SPTA1 0.177614080987389 9 0.230779897545499 0.85953076691024 191 0.700076060427026 2 2 0 -6.74854036683766 LTS-022 chr1 158647523 158687163 39641 * c(OR6K3, SPTA1, OR6K2) 0.429 1 NA 0.640148291490472 75 0.296197436588235 1 1 0 -5.77184838038089 LTS-022 chr1 158687164 159806820 1119657 * c(CADM3-AS1, OR10J5, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, FCRL6, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, OR6N2, AIM2) 0.405129710230814 22 0.100277375055652 0.713054898942589 904 0.459012820867131 2 1 1 -6.82782239658187 LTS-022 chr1 159806821 161336367 1529547 * c(TSTD1, LINC01133, MIR5187, SLAMF6, KLHDC9, COPA, ITLN2, FCER1G, NCSTN, ARHGAP30, CFAP126, CFAP45, USP21, C1orf204, APOA2, KCNJ9, KCNJ10, VSIG8, LY9, MPZ, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, PEX19, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, NA NA NA NA NA NA NA NA NA LTS-022 ADAMTS4, CD48, NR1I3) 0.399199130212079 67 0.140940316348805 0.973289380307779 4024 0.589152064423299 2 1 1 -6.78654345974755 LTS-022 NA NA NA NA LTS-022 chr1 161336368 161337583 1216 * CFAP126 NA 0 NA 0.435 1 NA NA NA NA NA LTS-022 chr1 161337584 161643044 305461 * c(FCGR2A, FCGR2B, FCGR3A, FCGR3B, CFAP126, HSPA6, HSPA7, FCGR2C) 0.356511109484874 9 0.134791505667086 0.553868926116042 412 0.36933486890322 2 1 1 -7.05837322312126 LTS-022 chr1 161643045 161643176 132 * FCGR2B NA 0 NA 0.99 1 NA NA NA NA NA LTS-022 chr1 161643177 169364148 7720972 * c(MIR921, MIR3658, LOC100505795, LOC100505918, MIR4654, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, DPT, FCGR2B, ALDH9A1, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, NME7, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, CCDC181, RGS4, RXRG, XCL1, RPL31P11, UAP1, XCL2, MIR556, MIR557, UCK2, NA NA NA NA NA NA NA NA NA LTS-022 LINC00626, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, NOS1AP) 0.422483538569029 93 0.103549834650735 0.878293399663344 4614 0.518920957752446 2 1 1 -6.76420480917166 LTS-022 NA NA NA NA LTS-022 chr1 169364149 175054627 5690479 * c(MIR1295A, MIR3119-1, MIR3120, MIR3119-2, LOC100506023, GAS5-AS1, DNM3OS, MIR1295B, SLC19A2, RC3H1, METTL11B, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, LINC01142, ANKRD45, FASLG, FMO6P, SERPINC1, MYOC, SUCO, METTL13, PIGC, PRRX1, DARS2, C1orf112, SCYL3, CCDC181, GAS5, SNORD74, TNN, MRPS14, SELE, SELL, SELP, SNORD75, SNORD76, NA NA NA NA NA NA NA NA NA LTS-022 SNORD77, SNORD78, TOP1P1, TNFSF4, LOC730159, MROH9, ZBTB37, BLZF1, VAMP4, TNFSF18, CENPL, METTL18, GORAB, C1orf105, GPR52, PRDX6, RABGAP1L) 0.425606134446201 105 0.0987104601602836 0.790556932509317 4513 0.474166204296755 2 1 1 -6.82124900663489 LTS-022 NA NA NA NA LTS-022 chr1 175054628 181680082 6625455 * c(GM140, RASAL2-AS1, MIR3121, LHX4-AS1, MIR4424, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, C1orf220, ASTN1, IER5, RALGPS2, MIR488, QSOX1, KIAA1614, BRINP2, PAPPA2, TNN, TOR3A, RFWD2, SOAT1, SCARNA3, TNR, LOC730102, CACNA1E, NPHS2, TEX35, ACBD6, SEC16B, LHX4, ANGPTL1, XPR1, RASAL2, KIAA0040, CEP350, FAM20B) 0.416262517065854 103 0.104628743640607 0.921252428874817 4701 0.845707502998432 2 1 1 -6.77396313900193 LTS-022 chr1 181680083 181768978 88896 * CACNA1E 0 1 NA 0.999699932605588 285 0.528141407326616 3 3 0 -5.7682780511798 LTS-022 chr1 181768979 181776112 7134 * CACNA1E 0 1 NA 0.845640693735905 157 0.4069912383826 2 2 0 -5.76441025367349 LTS-022 chr1 181776113 182542851 766739 * c(ZNF648, TEDDM1, GLUL, RGSL1, LINC00272, RNASEL) 0.26479218347839 9 0.16468108911199 1.20157805179982 373 0.683119680242958 4 3 1 -6.78422535330806 LTS-022 chr1 182542852 182543331 480 * RNASEL 0.407 1 NA 1.0252777828211 11 0.256012925810042 3 3 0 -5.76447016625297 LTS-022 chr1 182543332 185267030 2723699 * c(ARPC5, IVNS1ABP, TSEN15, FAM129A, DHX9, NMNAT2, COLGALT2, RGL1, LOC284648, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, SWT1, RGS16, RNASEL, RNF2, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, RGS8, SMG7) 0.369351347236924 55 0.0780133157933788 1.177614679095 2829 0.63653494141066 3 2 1 -6.74063862876177 LTS-022 chr1 185267031 196716667 11449637 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, OCLM, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, CDC73, HMCN1, B3GALT2) 0.322730473744416 14 0.117515114763175 0.937886728915009 2397 0.485303292306831 2 1 1 -7.32994374946747 LTS-022 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.222 1 NA NA NA NA NA LTS-022 chr1 196743864 196857228 113365 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.159961316092383 109 0.0884013672571052 0 NA NA -6.88151104270114 LTS-022 chr1 196857229 196857327 99 * CFHR4 NA 0 NA 0.567 1 NA NA NA NA NA LTS-022 chr1 196857328 199998383 3141056 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LHX9, PTPRC, CFHR5) 0.31953423332521 26 0.130076072416815 0.880814713602634 1681 0.523601347693798 2 1 1 -7.0179203466495 LTS-022 chr1 199998384 200007702 9319 * NR5A2 NA 0 NA 1.87 1 NA NA NA NA NA LTS-022 chr1 200007703 207134024 7126322 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, IL10, RPS10P7, KISS1, TMEM81, NA NA NA NA NA NA NA NA NA LTS-022 LAD1, NA, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PIGR, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, AVPR1B, LINC00862, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, FAM72A, LINC01136, CACNA1S, BTG2, NUAK2, DDX59, RASSF5, FCAMR, DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, SOX13, IKBKE, ZC3H11A, TMCC2, KIF14) 0.351315986510466 231 0.11342324856268 1.31723290006203 10813 0.76416844514517 3 2 1 -6.86592684414828 LTS-022 NA NA NA NA LTS-022 chr1 207134025 207968414 834390 * c(CR1, CR1L, CR2, CD55, CD46, PFKFB2, YOD1, C4BPA, C4BPB, C1orf116, FCAMR) 0.351916152589091 28 0.1012113078464 1.06334735634672 1190 0.560157527223623 3 2 1 -6.74898382616249 LTS-022 chr1 207968415 209605605 1637191 * c(LOC148696, MIR205, MIR29C, CD46, PLXNA2, MIR205HG, CD34) 0.353695763152259 10 0.0590036722021039 1.44982228209264 477 0.653418498865698 3 2 1 -6.86286320712612 LTS-022 chr1 209605606 209768228 162623 * c(CAMK1G, MIR205HG) NA 0 NA 0.704 1 NA NA NA NA NA LTS-022 chr1 209768229 218504326 8736098 * c(MIR4260, MIR3122, LINC00538, LINC00210, CENPF, SPATA17, TATDN3, C1orf74, SPATA45, FAM71A, ESRRG, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, KCNK2, LAMB3, ATF3, NEK2, G0S2, RRP15, KCTD3, DTL, GPATCH2, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, USH2A, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, NA NA NA NA NA NA NA NA NA LTS-022 LPGAT1) 0.382664088091347 93 0.137995404453568 0.883125109263337 4795 0.483122197163469 2 1 1 -6.7937228848743 LTS-022 NA NA NA NA LTS-022 chr1 218504327 222731785 4227459 * c(BPNT1, DUSP10, LYPLAL1, EPRS, RAB3GAP2, RNU5F-1, HLX, C1orf140, MIR194-1, MIR215, MARK1, RRP15, MARC2, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, C1orf115, HHIPL2, TAF1A) 0.36301704616189 32 0.149807534453486 1.10025750607983 1691 0.654470119784176 3 2 1 -6.74581149878927 LTS-022 chr1 222731786 222731934 149 * TAF1A NA 0 NA 0.595 1 NA NA NA NA NA LTS-022 chr1 222731935 223533641 801707 * c(BROX, MIA3, FAM177B, SUSD4, AIDA, TLR5, DISP1, TAF1A) 0.351150694498648 11 0.175482348244644 0.856556362601291 788 0.447332904825335 2 1 1 -6.79913041980929 LTS-022 chr1 223533642 223567803 34162 * c(CCDC185, SUSD4) 0.498 1 NA 0.921589514007131 42 0.261725627895567 2 2 0 -5.76651360870326 LTS-022 chr1 223567804 237617757 14049954 * c(NA, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR320B2, MIR3620, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, LEFTY1, SPHAR, CAPN9, LYST, SNAP47, CCSAP, DNAH14, C1orf131, EDARADD, MRPL55, HIST3H2BB, PARP1, SLC35F3, B3GALNT2, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, COG2, RBM34, FBXO28, ABCB10, GALNT2, TAF5L, DISC2, DISC1, NA NA NA NA NA NA NA NA NA LTS-022 GNG4, LIN9, CNIH4, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, STUM, FAM89A, KCNK1, CAPN8, COA6, LBR, LGALS8, ZNF847P, TRIM67, H3F3AP4, MTR, NID1, NVL, TRIM17, ARID4B, EGLN1, MAP10, HEATR1, ENAH, NUP133, ERO1B, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, RYR2, SNRPD2P2, MT1HL1, ACBD3, ARV1, JMJD4, SRP9, SNORA14B, TARBP1, TBCE, LEFTY2, GPR137B, TP53BP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DEGS1, ACTN2, WNT3A, HIST3H2A, GGPS1, TMEM63A, TOMM20, URB2) 0.427032491185782 270 0.0978179104488085 0.933574357092286 12382 0.529935336269095 2 1 1 -7.02078738912648 LTS-022 NA NA NA NA LTS-022 chr1 237617758 237965094 347337 * RYR2 0.353 1 NA 0.854137227121313 467 0.351966554396174 2 2 0 -5.76451382630221 LTS-022 chr1 237965095 242511578 4546484 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, PLD5, FH, OPN3, LINC01139, MAP1LC3C, FMN2, ZP4, RGS7, RYR2, GREM2, RPS7P5, KMO, EXO1) 0.361906581512781 26 0.164532348935259 0.832700112798776 1361 0.477910931394062 2 1 1 -6.78670049082579 LTS-022 chr1 242511579 242612519 100941 * PLD5 NA 0 NA 0.37 1 NA NA NA NA NA LTS-022 chr1 242612520 243419567 807048 * c(SDCCAG8, PLD5, LINC01347, CEP170) 0.447164268346855 2 0.0155563491861041 0.51332266154873 227 0.320019792536802 2 1 1 -10.0534217008398 LTS-022 chr1 243419568 243433381 13814 * SDCCAG8 NA 0 NA 1.004 1 NA NA NA NA NA LTS-022 chr1 243433382 244586279 1152898 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, ADSS, C1orf100, LOC339529) 0.439395559600161 2 0.0643467170879758 0.8416751072197 411 0.463581957182185 2 1 1 -6.85918440001001 LTS-022 chr1 244586280 244587186 907 * ADSS NA 0 NA 2.076 1 NA NA NA NA NA LTS-022 chr1 244587187 246943955 2356769 * c(COX20, LINC01341, ADSS, CNST, LOC255654, C1orf101, NA, HNRNPU, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, EFCAB2) 0.311263132645957 24 0.115506038489493 1.26796134282437 1323 0.835807057258805 4 3 1 -6.79135975900412 LTS-022 chr1 246943956 247002368 58413 * LINC01341 NA 0 NA 0.399 1 NA NA NA NA NA LTS-022 chr1 247002369 247003889 1521 * AHCTF1 NA 0 NA 0.416046716878415 39 0.116676953469763 1 NA NA -5.76911652009574 LTS-022 chr1 247003890 247003901 12 * AHCTF1 NA 0 NA 0.722 1 NA NA NA NA NA LTS-022 chr1 247003902 247752281 748380 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, AHCTF1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2G2, OR2C3, ZNF496, ZNF670) 0.340031980719363 18 0.139581365218785 1.2857619755903 1016 0.937172770258996 3 2 1 -6.7535860072374 LTS-022 chr1 247752282 248605384 853103 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3, OR2G2) 0.364534528599941 53 0.0585065401427695 0.823315603758537 728 0.775171060362639 3 2 1 -6.82929565404171 LTS-022 chr1 248605385 248616012 10628 * character(0) NA 0 NA 0.13 1 NA NA NA NA NA LTS-022 chr1 248616013 248814154 198142 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.281720174892495 11 0.104180437877577 0.499831472406128 241 0.339269888884142 1 1 0 -6.94849510287041 LTS-022 chr1 248814155 249105163 291009 * c(OR14I1, OR2T27, LYPD8, SH3BP5L) 0.376026647438415 6 0.0391918358845308 1.12224641067911 52 0.758810381169193 3 2 1 -6.81219175151271 LTS-022 chr1 249105164 249214134 108971 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.21329149691621 291 0.789064542576952 3 NA NA -5.76468719577152 LTS-022 chr2 38824 38938 115 * FAM110C 0.327 1 NA 1.29276256540603 3 0.117069779761189 3 3 0 -5.76447592015159 LTS-022 chr2 38939 12858025 12819087 * c(SNORA80B, MIR4261, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, MIR4429, LINC00570, PDIA6, YWHAQ, CMPK2, MBOAT2, TMEM18, C2orf50, PQLC3, LINC01105, E2F6, CYS1, MYT1L, LPIN1, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, C2orf48, KCNF1, RNF144A-AS1, LOC400940, LINC00487, ODC1, TRAPPC12, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, NA NA NA NA NA NA NA NA NA LTS-022 RPS7, RRM2, FAM110C, SOX11, ADAM17, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, NOL10, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.431194701094742 155 0.0891230576042603 0.916938697549855 5382 0.523441716364353 2 1 1 -6.93749930395554 LTS-022 NA NA NA NA LTS-022 chr2 12858026 20884398 8026373 * c(MIR3125, LOC100506474, NT5C1B-RDH14, MIR4757, MYCNOS, OSR1, TTC32, FAM84A, GDF7, DDX1, PUM2, TRIB2, MSGN1, GEN1, KCNS3, RHOB, LINC00954, MATN3, MYCN, NBAS, WDR35, RDH14, SDC1, HS1BP3, RAD51AP2, VSNL1, SMC6, FAM49A, NT5C1B, LAPTM4A) 0.433047017222157 73 0.0728393099122524 0.805414312290886 2583 0.449387982601592 2 1 1 -6.85570682522995 LTS-022 chr2 20884399 20884586 188 * character(0) 0.4735372606195 2 0.014142135623731 0.465917621588097 4 0.165622814450989 0 0 0 -11.5998653495144 LTS-022 chr2 20884587 20884973 387 * LDAH 0.474 1 NA 0.427082465597954 9 0.194486503387767 1 1 0 -5.7647597939814 LTS-022 chr2 20884974 21235259 350286 * c(APOB, LDAH) 0.27539422677188 6 0.21615773561607 0.516504822865567 303 0.338201229288984 1 1 0 -6.77767726259182 LTS-022 chr2 21235260 21235358 99 * APOB NA 0 NA 0.578 1 NA NA NA NA NA LTS-022 chr2 21235359 21365954 130596 * APOB 0.112376856568597 3 0.225743955253144 0.750404202701692 287 0.424956029211824 2 2 0 -6.74872320647149 LTS-022 chr2 21365955 21366191 237 * character(0) NA 0 NA 0.427067873056268 5 0.0968540138559058 1 NA NA -5.76527231990475 LTS-022 chr2 23729986 23860176 130191 * KLHL29 0.478 1 NA 0.982018506997844 39 0.513110477064554 2 2 0 -5.77084671591991 LTS-022 chr2 23860177 27789861 3929685 * c(OST4, MIR1301, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, KRTCAP3, FKBP1B, MAPRE3, EFR3B, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, PFN4, FAM228B, KCNK3, KHK, KIF3C, MFSD2B, PTRHD1, MPV17, ITSN2, DNAJC27, ATRAID, SF3B6, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, NA NA NA NA NA NA NA NA NA LTS-022 AGBL5, FNDC4, FAM228A, DNAJC27-AS1, UCN, SLC30A3, CAD, CENPO, WDCP, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, DRC1, OTOF, TP53I3, SNX17) 0.428881991780646 114 0.108776053329696 0.964510025328512 6569 0.524828539750308 2 1 1 -6.89180254933921 LTS-022 NA NA NA NA LTS-022 chr2 27789862 27789868 7 * character(0) NA 0 NA 0.678 1 NA NA NA NA NA LTS-022 chr2 27789869 27806708 16840 * c(C2orf16, ZNF512) 0.432424894788632 4 0.0221716786313832 0.526301366142941 147 0.191383039974643 2 1 1 -7.37190568979273 LTS-022 chr2 27806709 27820933 14225 * ZNF512 NA 0 NA 0.792 1 NA NA NA NA NA LTS-022 chr2 27820934 30865048 3044115 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, LCLAT1, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, RBKS, SNORD92, CCDC121, CLIP4, LBH, ZNF512, MRPL33, BRE, SUPT7L) 0.440033518296099 47 0.0451801922166413 0.855120604956018 2472 0.437324508682797 2 1 1 -6.99447085359844 LTS-022 chr2 30865049 30954292 89244 * c(LCLAT1, CAPN13) 0 1 NA 0.719963542163765 53 1.19294883141258 2 2 0 -5.76541013267974 LTS-022 chr2 30954293 31602753 648461 * c(EHD3, CAPN14, XDH, GALNT14, CAPN13) 0.301350213331032 28 0.199941327372643 1.02077681451569 614 1.11774348748744 4 3 1 -6.77404799260373 LTS-022 chr2 31602754 31606685 3932 * XDH 0.49 1 NA 1.06010837130876 17 0.427900990128489 3 3 0 -5.76450015996038 LTS-022 chr2 31606686 71681232 40074547 * c(SNORA36C, SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LOC100133985, LINC01119, DBIL5P2, ARHGEF33, LOC100271832, LOC100288911, MIR3126, MIR3682, CEBPZOS, MIR4765, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, RMDN2-AS1, CEBPZ, MPHOSPH10, C1D, CCT4, CDC42EP3, B3GNT2, SIX2, PROKR1, GPR75, SNRNP27, GTF2A1L, STON1, CFAP36, TEX261, CCDC85A, WDR92, ADD2, PPP1R21, C2orf73, CLHC1, PLEKHH2, NA NA NA NA NA NA NA NA NA LTS-022 GALM, TMEM178A, AHSA2, COMMD1, PUS10, LINC00309, MYADML, RMDN2, ASPRV1, CYP1B1, OXER1, CLEC4F, KCNG3, GKN2, APLF, TMEM17, SPRED2, EPAS1, EFEMP1, AAK1, CEP68, PSME4, EHBP1, RHOQ, HAAO, PRKD3, FSHR, GPATCH11, RASGRP3, QPCT, VAX2, CNRIP1, FAM98A, GFPT1, NFU1, ERLEC1, BMP10, ZNF638, EML4, LINC00486, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, LGALSL, MSH6, ANXA4, FOXN2, LOC339803, C2orf74, LOC339807, FIGLA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CDKL4, PRORSD1P, LOC375196, LOC388942, TMEM247, LINC01118, TSPYL6, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, PCBP1-AS1, PAIP2B, LTBP1, MIR216A, MIR217, EPCAM, MXD1, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, CD207, PCBP1, WDPCP, MEMO1, ASB3, CRIM1, PCYOX1, VPS54, DYNC2LI1, PEX13, VIT, ATP6V1B1, PIGF, BCL11A, PLEK, ETAA1, HEATR5B, AFTPH, PPM1B, C2orf42, FANCL, SRBD1, PPP3R1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 FBXO48, NDUFAF7, NAGK, TTC27, SLC30A6, CCDC88A, PRKCE, EIF2AK2, GKN1, KCNK12, PNO1, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, BIRC6, MTA3, NLRC4, RAB1A, REL, RPS27A, THADA, ATL2, ABCG5, ABCG8, SRSF7, GMCL1, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SLC8A1, SNRPG, SOS1, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, MIR558, MIR559, TGFA, TIA1, LOC728730, C1GALT1C1L, MORN2, MEIS1-AS3, UGP2, VRK2, XDH, XPO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 OR7E91P, CAMKMT, GEMIN6, ANKRD53, FBXO11, CALM2, THUMPD2, DYSF, FAM161A, ANTXR1, YIPF4, KIAA1841, DPY30, MCEE, FAM136A, MAP4K3, PNPT1, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, CRIPT, PREPL, FEZ2, SOCS5, USP34, SERTAD2, ACYP2, ARHGAP25) 0.418598968502945 400 0.0955182917240709 0.869171226034423 20369 0.590173615307461 2 1 1 -6.78221902226074 LTS-022 NA NA NA NA LTS-022 chr2 71681233 71693748 12516 * DYSF NA 0 NA 1.383 1 NA NA NA NA NA LTS-022 chr2 71693749 73646381 1952633 * c(SMYD5, CCT7, FBXO41, EGR4, EMX1, EXOC6B, RAB11FIP5, NOTO, CYP26B1, SPR, ALMS1, DYSF, PRADC1, SFXN5) 0.395442153622601 17 0.180950350681519 0.992554120900776 1585 0.515087935866093 2 1 1 -6.84501178811816 LTS-022 chr2 73646382 73762168 115787 * ALMS1 0.430656833401235 4 0.0287097544399112 0.50186289059421 213 0.225903566263959 2 1 1 -7.39186801867633 LTS-022 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 1.077 1 NA NA NA NA NA LTS-022 chr2 73777367 87408672 13631306 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, NA NA NA NA NA NA NA NA NA LTS-022 REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.435309381721991 117 0.0909493094729393 0.885884443290643 6969 0.507560932816573 2 1 1 -6.84240406447933 LTS-022 NA NA NA NA LTS-022 chr2 87408673 88272945 864273 * c(CYTOR, RMND5A) 0.402022950291817 3 0.0927739187487518 0.446888391669607 100 0.42798940041628 0 0 0 -7.69948484888943 LTS-022 chr2 88272946 88273020 75 * character(0) NA 0 NA 0.593 1 NA NA NA NA NA LTS-022 chr2 88273021 89160543 887523 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, EIF2AK3) 0.387033787836537 16 0.124572602659386 0.830642900998893 581 0.430103702807652 2 1 1 -6.75380232815535 LTS-022 chr2 89160544 89160706 163 * character(0) NA 0 NA 0.636 1 NA NA NA NA NA LTS-022 chr2 89160707 91937761 2777055 * LOC654342 0.328729507311096 12 0.0725302444752281 0.680110175934461 357 0.727498029592582 2 1 1 -7.54774201979917 LTS-022 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.24509273463479 14 0.600955100624858 3 NA NA -5.76458564621877 LTS-022 chr2 95537183 95537568 386 * c(TEKT4, LOC442028) 0.315 1 NA 1.38460506500584 9 0.691021667130955 4 4 0 -5.76441141246856 LTS-022 chr2 95537569 95719703 182135 * c(TEKT4, MAL, LOC442028) 0.30126082153426 11 0.0571158312713575 1.36205982050961 81 0.971244862388496 4 3 1 -6.75462672572197 LTS-022 chr2 95719704 95775761 56058 * c(MAL, MRPS5) 0.476 1 NA 1.13832716644949 61 0.692948894968634 3 3 0 -5.76442092299269 LTS-022 chr2 95775762 96049899 274138 * c(PROM2, KCNIP3, MRPS5, ZNF2, ZNF514) NA 0 NA 0.989137472452751 370 0.573074490378644 3 NA NA -5.77609493937448 LTS-022 chr2 96049900 96789740 739841 * c(TRIM43, GPAT2, ADRA2B, KCNIP3, ASTL, FAHD2A, TRIM43B, FAHD2CP) 0.421917975274629 31 0.0793023071163664 0.732109430366627 568 0.467495613659522 2 1 1 -6.79064969792957 LTS-022 chr2 96789741 112523996 15734256 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, ACTR1B, TXNDC9, ARID5A, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, COX5B, LINC01102, C2orf15, ITPRIPL1, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, DUSP2, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, SULT1C4, RNF149, NA NA NA NA NA NA NA NA NA LTS-022 LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1R1, INPP4A, ANKRD36, SLC9A4, AFF3, LIMS1, ASTL, SULT1C3, NPAS2, NPHP1, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, STARD7, ANKRD36B, RANBP2, SLC5A7, RPL31, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, LINC01125, RGPD4-AS1, RFX8, ZAP70, IL1R2, MALL, PDCL3, C2orf49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 UXS1, TSGA10, LMAN2L, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.410075857195535 224 0.104031827227215 0.893724802393776 9692 0.5347989575075 2 1 1 -6.82489122821319 LTS-022 NA NA NA NA LTS-022 chr2 112523997 112543007 19011 * ANAPC1 0.466961866965405 3 0.0146401275039985 0.442018162663366 96 0.315081449891595 0 0 0 -10.9719540482082 LTS-022 chr2 112543008 112543013 6 * ANAPC1 NA 0 NA 0.97 1 NA NA NA NA NA LTS-022 chr2 112543014 113346480 803467 * c(MERTK, FBLN7, TTL, ZC3H6, ANAPC1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.429194312687574 31 0.125137902426307 0.952053715326296 1117 0.506424190249325 2 1 1 -6.7730635259744 LTS-022 chr2 113346481 113346512 32 * CHCHD5 0.42 1 NA 2.114 1 NA NA NA NA NA LTS-022 chr2 113346513 113788822 442310 * c(CKAP2L, IL36B, IL37, IL36A, IL1A, IL1B, FLJ42351, IL36G, SLC20A1, CHCHD5) 0.376654043643634 15 0.156424727067351 0.852569300175182 538 0.469484599248312 2 1 1 -6.75956461978909 LTS-022 chr2 113788823 113789225 403 * IL36B NA 0 NA 1.182 1 NA NA NA NA NA LTS-022 chr2 113789226 114004574 215349 * c(PSD4, IL36RN, IL36B, IL1RN, PAX8-AS1, PAX8, IL1F10) 0.363896235543272 20 0.13888816970574 1.45842165062438 465 0.824341850448925 3 2 1 -6.74369404823923 LTS-022 chr2 114004575 114035847 31273 * c(PAX8-AS1, PAX8) NA 0 NA 0.525 1 NA NA NA NA NA LTS-022 chr2 114035848 118866665 4830818 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, CBWD2, FOXD4L1, WASH2P, DPP10-AS1, LINC01191, INSIG2, CCDC93, DPP10, FAM138B, PAX8, SLC35F5, DDX11L2, DDX18) 0.355573254602023 26 0.144524200794831 0.920982665310287 1015 0.558810332418512 2 1 1 -6.87928711042142 LTS-022 chr2 118866666 118866669 4 * INSIG2 NA 0 NA 1.021 1 NA NA NA NA NA LTS-022 chr2 118866670 130737578 11870909 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, MYO7B, INSIG2, POLR2D, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, TMEM177, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, MARCO, HS6ST1) 0.34379341453464 62 0.128903894076111 1.13434961070127 4707 0.674385815805257 3 2 1 -6.74856872696043 LTS-022 chr2 130737579 130737582 4 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.443 1 NA NA NA NA NA LTS-022 chr2 130737583 130739919 2337 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.489484690390577 55 0.208750309179392 1 NA NA -5.76474870172967 LTS-022 chr2 130739920 130750378 10459 * RAB6C NA 0 NA 1.74 1 NA NA NA NA NA LTS-022 chr2 130750379 132120172 1369794 * c(CYP4F30P, FAR2P2, TUBA3E, FAM168B, WTH3DI, AMER3, PTPN18, MED15P9, GPR148, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, POTEF, MZT2B, CCDC115, CCDC74B, IMP4) 0.394064848715147 29 0.123450315088972 1.10001824808968 1178 0.686681556518368 3 2 1 -6.77773718025368 LTS-022 chr2 132120173 132179876 59704 * c(WTH3DI, LINC01120) NA 0 NA 0.377256446979928 47 0.186592220628996 1 NA NA -5.89702958530242 LTS-022 chr2 132179877 132181174 1298 * character(0) NA 0 NA 1.024 1 NA NA NA NA NA LTS-022 chr2 132181175 144936544 12755370 * c(CCNT2-AS1, MIR663B, MIR3679, LOC100507600, MIR4784, NXPH2, TUBA3D, LYPD1, ACMSD, LOC150776, DARS, RAB3GAP1, UBXN4, R3HDM1, GPR39, C2orf27A, HNMT, SPOPL, NCKAP5, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LRP1B, ANKRD30BL, ARHGAP15, YY1P2, MZT2A, CXCR4, GTDC1, MAP3K19, THSD7B, TMEM163, ZRANB3, KYNU, CCNT2, CCDC74A) 0.360768186661511 91 0.126028742579 0.969563649332605 3757 0.561728966642766 2 1 1 -7.23186775156215 LTS-022 chr2 144936545 145255210 318666 * c(GTDC1, ZEB2) 0.297 1 NA 0.783083127832892 147 0.8188440380572 2 2 0 -5.76618935789182 LTS-022 chr2 145255211 162282412 17027202 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, EPC2, ARL5A, MMADHC, GPD2, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, ERMN, RBMS1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, PKP4, TANC1, ACVR1, NMI, ACVR2A, NA NA NA NA NA NA NA NA NA LTS-022 DAPL1, CYTIP, ZEB2, CD302) 0.367125886162203 96 0.114688869739418 0.982590130902826 6413 0.545273660545024 2 1 1 -7.48534352112425 LTS-022 NA NA NA NA LTS-022 chr2 162282413 162356011 73599 * AHCTF1P1 NA 0 NA 0.355 1 NA NA NA NA NA LTS-022 chr2 162356012 163693301 1337290 * c(DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.384875248976951 6 0.050784512074713 0.74885342618287 833 0.506304370567624 2 1 1 -6.91944343748664 LTS-022 chr2 163693302 163694879 1578 * KCNH7 NA 0 NA 1.77 1 NA NA NA NA NA LTS-022 chr2 163694880 165944761 2249882 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN3A, KCNH7) 0.393799573608753 16 0.0559749571981376 1.08303507103855 716 0.687210241527639 3 2 1 -6.93497983954354 LTS-022 chr2 165944762 168726323 2781562 * c(LOC100506124, TTC21B-AS1, XIRP2, GALNT3, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, B3GALT1) 0.298916683873921 16 0.170524485045403 0.859209962930204 1877 0.726476817699828 2 1 1 -6.97630289767552 LTS-022 chr2 168726324 178372815 9646492 * c(MIR933, LOC100130691, SP9, MIR1246, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, NOSTRIN, BBS5, CCDC173, UBR3, ATF2, MYO3B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, CERS6, METAP1D, GAD1, GORASP2, STK39, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, NA NA NA NA NA NA NA NA NA LTS-022 LRP2, MIR10B, LINC01124, NFE2L2, PHOSPHO2, PDK1, ZAK, ATP5G3, SPC25, G6PC2, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, PPIG, CIR1, TLK1) 0.373238258424351 146 0.120815354691136 1.01182846345215 6963 0.642668380342402 3 2 1 -6.96714043743716 LTS-022 NA NA NA NA LTS-022 chr2 178372816 178378523 5708 * AGPS NA 0 NA 0.743 1 NA NA NA NA NA LTS-022 chr2 178378524 179397541 1019018 * c(MIR548N, TTN-AS1, OSBPL6, RBM45, TTC30B, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, AGPS, PRKRA, TTC30A) 0.382279729923316 43 0.0784887645287757 0.878260417410326 1129 0.457319850947227 2 1 1 -6.80855830590974 LTS-022 chr2 179397542 179641385 243844 * c(MIR548N, TTN-AS1, TTN) 0.422471550967394 73 0.0532319384336734 0.688531952616705 2809 0.27139447973305 2 1 1 -6.85240448965418 LTS-022 chr2 179641386 199012084 19370699 * c(LOC100130452, NEMP2, MIR1258, MIR1245A, MIR3129, MIR3606, HSPE1-MOB4, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, RFTN2, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, SF3B1, TMEFF2, FRZB, MOB4, HIBCH, MSTN, GLS, CCDC150, CCDC141, SLC40A1, HSPD1, HSPE1, INPP1, ITGA4, ITGAV, CERKL, FSIP2, C2orf66, MYO1B, NAB1, NEUROD1, PDE1A, GULP1, PLCL1, PMS1, DNAJC10, NA NA NA NA NA NA NA NA NA LTS-022 ASNSD1, MFSD6, ZC3H15, DNAH7, SLC39A10, HECW2, CWC22, PCGEM1, OSGEPL1, NABP1, BOLL, SSFA2, STAT1, STAT4, MIR561, TFPI, TTN, PGAP1, COQ10B, WDR75, C2orf88, SDPR, SESTD1, ANKRD44, ZNF804A, STK17B, MARS2, GTF3C3, ORMDL1) 0.389013755038195 156 0.0954505183195841 0.917879654055409 9183 0.522646102129612 2 1 1 -7.02035932986358 LTS-022 NA NA NA NA LTS-022 chr2 199012085 199012154 70 * PLCL1 NA 0 NA 1.126 1 NA NA NA NA NA LTS-022 chr2 199012155 207024872 8012718 * c(SNORD11B, GCSHP3, LOC100507140, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, EEF1B2, C2orf69, SATB2, SPATS2L, FAM126B, ICOS, AOX1, AOX2P, FTCDNL1, NDUFB3, NDUFS1, ORC2, NOP58, PLCL1, PPIL3, INO80D, STRADB, WDR12, CYP20A1, ALS2, MPP4, NIF3L1, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, NA NA NA NA NA NA NA NA NA LTS-022 CASP8, CASP10, NRP2, CFLAR, CD28, BZW1) 0.370813777930927 78 0.128137577475301 1.08006461676805 5972 0.666175624426719 3 2 1 -6.78140674578508 LTS-022 NA NA NA NA LTS-022 chr2 207024873 207025401 529 * EEF1B2 NA 0 NA 0.437 1 NA NA NA NA NA LTS-022 chr2 207025402 216248823 9223422 * c(LOC100130451, MIR548F2, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, LANCL1, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, PTH2R, ZDBF2, BARD1, RPE, SNORA41, NA NA NA NA NA NA NA NA NA LTS-022 FZD5, SPAG16, KLF7, ADAM23) 0.395095291765167 89 0.0973168967668142 0.94503302211293 5068 0.598588263064001 2 1 1 -6.92436240142274 LTS-022 NA NA NA NA LTS-022 chr2 216248824 224462032 8213209 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, ARPC2, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, PKI55, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EPHA4, ACSL3, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PAX3, PRKAG3, FEV, ANKZF1, NA NA NA NA NA NA NA NA NA LTS-022 ASIC4, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC4A3, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.40805747768161 181 0.0739727356739065 1.17319880504172 7539 0.868746199644669 3 2 1 -6.96177859928326 LTS-022 NA NA NA NA LTS-022 chr2 224462033 224462095 63 * SCG2 NA 0 NA 0.615 1 NA NA NA NA NA LTS-022 chr2 224462096 232672932 8210837 * c(MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, COL4A3, COL4A4, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, C2orf72, SNORD82, AGFG1, HTR2B, SP110, SPATA3-AS1, IRS1, NCL, PDE6D, CAB39, SERPINE2, PID1, DOCK10, C2orf83, MFF, PSMD1, PTMA, WDFY1, NYAP2, SNORD20, CCL20, LOC646736, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCG2, FAM124B, TM4SF20, ARMC9, SPHKAP, SLC19A3, NA NA NA NA NA NA NA NA NA LTS-022 ITM2C, RHBDD1, CUL3, DNER, GPR55, B3GNT7, TRIP12, SP140L) 0.368356740775323 121 0.120372169659976 0.984971632234981 5108 0.586892083275901 3 2 1 -7.06863559477803 LTS-022 NA NA NA NA LTS-022 chr2 232672933 232791194 118262 * c(MIR1471, NPPC, COPS7B) NA 0 NA 1.19057502316622 41 0.506752995827837 3 NA NA -5.76470136754965 LTS-022 chr2 232791195 232879518 88324 * DIS3L2 NA 0 NA 0.385 1 NA NA NA NA NA LTS-022 chr2 232879519 233204356 324838 * DIS3L2 0 1 NA 0.682270141034729 137 0.636857433173958 2 2 0 -5.7869152681299 LTS-022 chr2 233204357 234471530 1267174 * c(CHRND, CHRNG, DIS3L2, TIGD1, ALPI, ALPP, ALPPL2, NGEF, GIGYF2, ECEL1P2, INPP5D, KCNJ13, C2orf82, NEU2, ATG16L1, USP40, SAG, PRSS56, SCARNA6, SCARNA5, EFHD1, DGKD, ECEL1, EIF4E2) 0.221465429606151 44 0.0822767303641074 0.607704809548888 2158 0.338501709725711 1 1 0 -6.81810872736528 LTS-022 chr2 234471531 234473954 2424 * USP40 NA 0 NA 0.374 1 NA NA NA NA NA LTS-022 chr2 234473955 234676646 202692 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.25597552384717 6 0.0670146750097818 0.358676485663079 241 0.196046010438499 1 1 0 -7.40586893808042 LTS-022 chr2 234676647 234676884 238 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) NA 0 NA 0.514 1 NA NA NA NA NA LTS-022 chr2 234676885 242815360 8138476 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, NA NA NA NA NA NA NA NA NA LTS-022 PRLH, THAP4, ANKMY1, PDCD1, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, PPP1R7, HJURP, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, SPP2, D2HGDH, TRPM8, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.206416156248906 179 0.0814551575429828 0.626028455674042 7657 0.395664999094326 1 1 0 -7.3293864030067 LTS-022 NA NA NA NA LTS-022 chr2 242815361 243037218 221858 * c(RTP5, LOC728323) NA 0 NA 0.737010310968624 53 0.597448098807947 2 NA NA -5.77167305705359 LTS-022 chr3 239351 367757 128407 * CHL1 0.189 1 NA 0.606208971032662 13 0.172624648387098 1 1 0 -5.79625125636407 LTS-022 chr3 367758 5257823 4890066 * c(EGOT, BHLHE40-AS1, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.203423993145436 23 0.0855125906639212 0.541875563649833 1616 0.286923915633712 1 1 0 -6.75344100698138 LTS-022 chr3 5257824 5257828 5 * EDEM1 NA 0 NA 0.67 1 NA NA NA NA NA LTS-022 chr3 5257829 5260738 2910 * EDEM1 0.18056940623282 8 0.0807791300840932 0.858721592572977 64 0.348612937451739 7 6 1 -6.74803973640001 LTS-022 chr3 5260739 6814410 1553672 * c(MIR4790, EDEM1) 0.377 1 NA 0.637455703242399 27 0.295558840994528 1 1 0 -6.03067801932647 LTS-022 chr3 6814411 7783195 968785 * GRM7 0.470452113556951 9 0.0330748309813436 0.77492596154601 178 0.410492564058055 2 1 1 -8.31171478762491 LTS-022 chr3 8299330 11684881 3385552 * c(MIR885, GHRLOS, LMCD1-AS1, SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, LINC00606, LINC00312, LMCD1, HRH1, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, GHRL, SETD5, EMC3, BRK1, RAD18, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A11, VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, CAV3, VGLL4, NA NA NA NA NA NA NA NA NA LTS-022 TATDN2, SRGAP3) 0.404539290108883 86 0.136847336731306 1.01425975589861 4175 0.624751331428307 3 2 1 -6.8750495327833 LTS-022 NA NA NA NA LTS-022 chr3 11684882 12194685 509804 * c(TAMM41, SYN2, TIMP4, VGLL4) 0 1 NA 0.921742844706033 133 0.671613783396945 2 2 0 -5.76919411779839 LTS-022 chr3 12194686 12780167 585482 * c(MKRN2OS, MKRN2, PPARG, TMEM40, RAF1, SYN2, TIMP4, TSEN2) 0.26675517157175 11 0.223963146318967 1.01792693193403 547 0.643338373173058 4 3 1 -6.84725576893957 LTS-022 chr3 12780168 12838293 58126 * c(CAND2, TMEM40) 0.433 1 NA 1.1784992096341 31 0.390657989187638 3 3 0 -5.76452348215901 LTS-022 chr3 12838294 15563197 2724904 * c(FGD5P1, MIR4270, FGD5-AS1, SH3BP5-AS1, CHCHD4, METTL6, FGD5, FBLN2, CAND2, NUP210, CAPN7, HACL1, LSM3, LINC00620, COL6A4P1, TPRXL, CCDC174, RPL32, RBSN, MRPS25, SLC6A6, NR2C2, WNT7A, XPC, TMEM43, HDAC11, GRIP2, COLQ, C3orf20, EAF1, SH3BP5, IQSEC1) 0.429629503916527 42 0.0784956555756487 1.03186173100708 2935 0.537976142052794 2 1 1 -6.98320461818537 LTS-022 chr3 15563198 15602243 39046 * c(HACL1, COLQ) NA 0 NA 0.574 1 NA NA NA NA NA LTS-022 chr3 15602244 28502605 12900362 * c(MIR3714, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, AZI2, THRB-AS1, BTD, MIR563, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, EOMES, KAT2B, OXNAD1, SLC4A7, TBC1D5, NR1D2) 0.435185907829585 81 0.0723952841039651 0.807209160029026 3774 0.478369401812327 2 1 1 -6.8861103855201 LTS-022 chr3 28502606 28520304 17699 * ZCWPW2 NA 0 NA 1.334 1 NA NA NA NA NA LTS-022 chr3 28520305 39224757 10704453 * c(ACVR2B-AS1, PDCD6IP, OSBPL10-AS1, CTDSPL, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, TRIM71, ZCWPW2, CMTM8, XIRP1, TTC21A, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, WDR48, SCN5A, SCN10A, TMPPE, LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, DCLK3, LRRFIP2, ACVR2B, SLC22A14, NA NA NA NA NA NA NA NA NA LTS-022 SLC22A13, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.421764294891378 134 0.103555565442442 0.951638864328316 6510 0.697916005583275 2 1 1 -6.91352468544499 LTS-022 NA NA NA NA LTS-022 chr3 39224758 40500338 1275581 * c(EIF1B, CCR8, CX3CR1, XIRP1, MYRIP, ENTPD3-AS1, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, RPL14, ENTPD3) 0.330629235252097 4 0.216851715849026 0.749767720151053 693 0.706432381101255 2 1 1 -6.83447294463387 LTS-022 chr3 40500339 40502962 2624 * RPL14 NA 0 NA 1.109 1 NA NA NA NA NA LTS-022 chr3 40502963 42956034 2453072 * c(CCDC13-AS1, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CYP8B1, TRAK1, ZNF620, HIGD1A, ZNF619, ZNF621, ZNF662, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, RPL14, SEC22C, ZBTB47) 0.443159669536131 45 0.0583915467107417 0.970034895556577 1901 0.503425459101837 2 1 1 -7.02915713396573 LTS-022 chr3 42956035 44791637 1835603 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, SNRK, ANO10, ZKSCAN7, KIAA1143, FAM198A, ZNF35, POMGNT2, ZNF502) 0.301972203671328 10 0.215056194206693 0.831477677678541 1654 0.51750060477886 2 1 1 -6.88114291655414 LTS-022 chr3 44791638 44794485 2848 * KIAA1143 NA 0 NA 0.338232250886551 62 0.148939352504583 0 NA NA -5.77406951107794 LTS-022 chr3 44794486 46009864 1215379 * c(LARS2-AS1, CXCR6, CCR9, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ZDHHC3, LZTFL1, SLC6A20, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TGM4, CLEC3B, FYCO1, LIMD1) 0.43821265306141 45 0.0787253440639023 0.852347549747073 1857 0.449359296589216 2 1 1 -6.81140243293513 LTS-022 chr3 46009865 46016851 6987 * FYCO1 0.354 1 NA 0.979310174926785 27 0.418005554837067 2 2 0 -5.76491173927989 LTS-022 chr3 46016852 46488890 472039 * c(CCR1, CCR3, CCR5, XCR1, LTF, CCR2, FYCO1, CCRL2) 0.216308241205798 9 0.225488358901297 0.819449517014583 473 0.61502556031102 2 2 0 -6.80097984260089 LTS-022 chr3 46488891 46539523 50633 * c(LTF, RTP3) 0.47 1 NA 0.910024295322684 81 0.457712894538881 2 2 0 -5.76514577958526 LTS-022 chr3 46539524 46713671 174148 * c(LOC100132146, ALS2CL, TDGF1, LRRC2, RTP3, LRRC2-AS1) 0.446044049056573 6 0.0258514989894203 0.782596457876971 265 0.458594775010835 2 1 1 -7.74039888009485 LTS-022 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 1.034 1 NA NA NA NA NA LTS-022 chr3 46714809 47042977 328169 * c(PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.453252181077483 8 0.031097772083727 1.08367045159957 704 0.526341684517507 2 1 1 -7.77257141356507 LTS-022 chr3 47042978 52825585 5782608 * c(SNORD19B, LINC00696, NRADDP, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, IQCF4, ABHD14A-ACY1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, NBEAL2, NA NA NA NA NA NA NA NA NA LTS-022 KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, GNL3, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, C3orf62, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, NCKIPSD, PHF7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, PRKAR2A, GLT8D1, SEMA3G, PCBP4, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TNNC1, UBA7, USP4, UQCRC1, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, CACNA2D2, ACY1, DCAF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 IP6K1, CDC25A) 0.427371438041881 169 0.114890180268459 0.887979077285733 14020 0.477767053561421 2 1 1 -6.78033675181854 LTS-022 NA NA NA NA LTS-022 chr3 52825586 52833760 8175 * c(ITIH1, ITIH3) 0 1 NA 1.14163222428702 47 0.6165437166062 3 3 0 -5.76441130181842 LTS-022 chr3 52833761 52861211 27451 * c(ITIH3, ITIH4) 0.289709194515897 9 0.224110153966997 0.953565627507767 183 0.642439177930346 4 3 1 -6.74021546184534 LTS-022 chr3 52861212 52864584 3373 * c(ITIH4, MUSTN1) 0.464 1 NA 0.854081178678124 13 0.253111154258868 2 2 0 -5.76441204881313 LTS-022 chr3 52864585 75790607 22926023 * c(ZNF717, LINC00994, MIR1284, MIR1324, MIR3136, MIR4272, MIR3938, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, TMEM110-MUSTN1, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, ARHGEF3-AS1, CACNA2D3-AS1, PRICKLE2-AS2, PRICKLE2-AS3, ARL6IP5, RPP14, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, ASB14, FAM19A4, PPP4R2, PRICKLE2, DNASE1L3, C3orf67, KCTD6, LINC00870, DNAH12, PDE12, DENND6A, FHIT, PDZRN3, FRMD4B, FLNB, FAM208A, RYBP, LRIG1, NA NA NA NA NA NA NA NA NA LTS-022 ERC2, APPL1, FOXP1, GPR27, EOGT, CCDC66, LINC00698, EIF4E3, SPATA12, ITIH4, TMEM110, ARF4, MUSTN1, FAM19A1, MITF, ARHGEF3, CNTN3, SFMBT1, PDHB, IL17RD, PXK, FEZF2, EBLN2, SHQ1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, LMOD3, ADAMTS9, ABHD6, LRTM1, C3orf14, PTPRG, SELENOK, PROK2, ATXN7, FAM86DP, MIR548A2, TKT, ERC2-IT1, TMF1, GXYLT2, WNT5A, CACNA1D, SLMAP, ESRG, THOC7, ACOX2, KBTBD8, CADPS, SUCLG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 HESX1, UBA3, RFT1, MAGI1, ACTR8, PSMD6) 0.378076070647331 358 0.0969136570388578 0.899307368066752 9912 0.501526717655759 2 1 1 -6.98274259903471 LTS-022 NA NA NA NA LTS-022 chr3 75790608 75790633 26 * ZNF717 NA 0 NA 0.795 1 NA NA NA NA NA LTS-022 chr3 75790634 88191480 12400847 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.377348636415925 28 0.103711647465971 0.762074275001899 1343 0.445804063140215 2 1 1 -7.18551186211441 LTS-022 chr3 88191481 90283666 2092186 * c(EPHA3, C3orf38, ZNF654, CGGBP1) NA 0 NA 0.636117214097131 314 0.37133781484734 1 NA NA -5.98731221619334 LTS-022 chr3 93591838 93593119 1282 * PROS1 0.364 1 NA 0.48209080615538 25 0.183184042245315 1 1 0 -5.76472807768995 LTS-022 chr3 93593120 97731391 4138272 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, GABRR3, LINC00879, EPHA6, STX19, PROS1, NSUN3, ARL6, MINA) 0.282576873203654 6 0.183106253306653 0.731537476402012 962 0.441181595168243 2 1 1 -7.27272596540008 LTS-022 chr3 97731392 97736425 5034 * GABRR3 NA 0 NA 0.519 1 NA NA NA NA NA LTS-022 chr3 97736426 98225641 489216 * c(GABRR3, OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.469 1 NA 0.447598081255403 225 0.22056750460415 1 1 0 -5.97909474943317 LTS-022 chr3 98225642 113300183 15074542 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, ALCAM, MYH15, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, ZBTB11, MORC1, GPR15, LINC00636, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, CD200, TRAT1, IMPG2, NA NA NA NA NA NA NA NA NA LTS-022 SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, ZBED2, CEP97, C3orf52, CMSS1, RETNLB, CCDC54, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.4072534061981 119 0.111280598486381 0.797466781270134 7139 0.480574310446183 2 1 1 -6.87468476553805 LTS-022 NA NA NA NA LTS-022 chr3 113300184 113302358 2175 * SIDT1 0 1 NA 1.1000520952477 7 0.802891737943007 3 3 0 -5.76441453113496 LTS-022 chr3 113302359 116164247 2861889 * c(ZBTB20-AS1, MIR4796, MIR4446, DRD3, TIGIT, USF3, ZDHHC23, GAP43, ZBTB20, LSAMP, ATP6V1A, GRAMD1C, SIDT1, CCDC191, MIR568, ZNF80, QTRT2, NAA50) 0.310743913825162 17 0.213659810694202 0.842118847614372 1447 0.560506764960143 2 1 1 -6.85900651180498 LTS-022 chr3 116164248 116164290 43 * LSAMP NA 0 NA 1.544 1 NA NA NA NA NA LTS-022 chr3 116164291 116728252 563962 * c(TUSC7, LSAMP) 0.478 1 NA 0.337141228566232 38 0.428717722389399 0 0 0 -5.98333250399495 LTS-022 chr3 117715910 118933326 1217417 * c(IGSF11-AS1, IGSF11, C3orf30, UPK1B, B4GALT4) 0 2 0 0.774859706616327 290 0.659785281327305 0 0 0 -Inf LTS-022 chr3 118933327 118948716 15390 * B4GALT4 0.426 1 NA 0.908773237015147 59 0.613456718069398 2 2 0 -5.76452985752151 LTS-022 chr3 118948717 122599659 3650943 * c(COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, PARP15, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.420792711769431 104 0.090236629841755 0.843021011305518 4609 0.512008593522392 2 1 1 -6.74248450724725 LTS-022 chr3 122599660 122599663 4 * DIRC2 NA 0 NA 0.983 1 NA NA NA NA NA LTS-022 chr3 122599664 123687808 1088145 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, CCDC14, DIRC2) 0.374200044835259 22 0.157563434624712 1.05728884085202 1183 0.628787554467199 3 2 1 -6.74905645289602 LTS-022 chr3 123687809 123687859 51 * character(0) NA 0 NA 0.339 1 NA NA NA NA NA LTS-022 chr3 123687860 123699253 11394 * ROPN1 NA 0 NA 0.37965772632611 73 0.239688667930394 1 NA NA -5.77950979733959 LTS-022 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 0.965 1 NA NA NA NA NA LTS-022 chr3 123699426 125690980 1991555 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.416543289250092 30 0.0878706533726587 0.959266521039499 1557 0.493704222584462 2 1 1 -6.81114136938678 LTS-022 chr3 125690981 125690988 8 * ROPN1B NA 0 NA 0.387 1 NA NA NA NA NA LTS-022 chr3 125690989 125725549 34561 * c(ROPN1B, SLC41A3) 0.445603839721756 2 0.0155563491861041 0.387257436067337 70 0.397566594288818 0 0 0 -8.93098296187781 LTS-022 chr3 125725550 125725559 10 * SLC41A3 0.492 1 NA 1.289 1 NA NA NA NA NA LTS-022 chr3 125725560 129369703 3644144 * c(ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, RPL32P3, H1FOO, C3orf22, DNAJB8, CHST13, KBTBD12, COPG1, TMCC1, PLXND1, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, H1FX-AS1, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, TXNRD3NB, LOC653712, SNORA7B, CNBP, RAB7A, ZXDC, EFCC1, ABTB1, CHCHD6, RUVBL1, NA NA NA NA NA NA NA NA NA LTS-022 MBD4, H1FX, LOC90246, EFCAB12) 0.415198209658768 93 0.125107466660143 0.998849262793859 3931 0.580362967964877 2 1 1 -6.90466858032799 LTS-022 NA NA NA NA LTS-022 chr3 129369704 137484419 8114716 * c(TMCC1-AS1, NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, EPHB1, TMCC1, DNAJC13, COL6A5, ANAPC13, NPHP3, ATP2C1, ASTE1, PIK3R4, KY, LOC339874, NPHP3-AS1, NCK1, PCCB, AMOTL2, ACKR4, RAB6B, IL20RB, ACPP, MSL2, PPP2R3A, CDV3, SRPRB, RYK, ALG1L2, COL6A4P2, SLCO2A1, TMEM108, SNORA58, TF, TRH, FAM86HP, NEK11, UBA5, C3orf36, CEP63, SLC35G2, SOX14, ACAD11, BFSP2) 0.401150193209076 69 0.121616720061287 0.857336239698639 4639 0.48000734797745 2 1 1 -6.73875844849004 LTS-022 chr3 137484420 137717471 233052 * SOX14 NA 0 NA 1.218 1 NA NA NA NA NA LTS-022 chr3 137717472 150916335 13198864 * c(WWTR1-AS1, LOC100289361, LOC100507389, HLTF-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, ERICH6, GRK7, CP, CPA3, CPB1, PISRT1, AGTR1, DZIP1L, C3orf58, MRAS, U2SURP, ZBTB38, GK5, ARMC8, WWTR1, PCOLCE2, SERP1, SLC9A9, TRIM42, GPR171, GYG1, PAQR9, NME9, NMNAT3, PRR23B, PRR23C, PLSCR5, ANKUB1, FOXL2NB, TM4SF1, ATP1B3, COMMD2, A4GNT, DBR1, CLDN18, SELENOT, PFN2, PIK3CB, PLOD2, PLS1, PLSCR1, XRN1, NA NA NA NA NA NA NA NA NA LTS-022 ATR, FAIM, SLC25A36, MRPS22, PLSCR2, PLSCR4, RASA2, RBP1, RBP2, BPESC1, CLSTN2, LOC646903, SIAH2, HLTF, FOXL2, TFDP2, TM4SF4, TRPC1, PRR23A, CLRN1, ZIC1, CEP70, ESYT3, EIF2A, ZIC4, HPS3, SPSB4, PXYLP1, COPB2, CHST2, RNF7, TSC22D2) 0.423827142838071 118 0.091398692500897 1.08513632737559 7485 0.673376626712903 3 2 1 -7.06082098036659 LTS-022 NA NA NA NA LTS-022 chr3 150916336 152555742 1639407 * c(MIR548H2, MIR5186, MED12L, AADAC, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY1, P2RY13, GPR87, SUCNR1, TMEM14EP, P2RY12, P2RY14) 0.432015388905859 18 0.058974709324161 0.866747682749873 949 0.453871970599716 2 1 1 -6.82093234017847 LTS-022 chr3 152555743 152555786 44 * P2RY1 NA 0 NA 1.008 1 NA NA NA NA NA LTS-022 chr3 152555787 158520483 5964697 * c(TIPARP-AS1, LINC00881, ARHGEF26-AS1, LOC100507537, KCNAB1-AS2, KCNAB1-AS1, PQLC2L, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, LINC00880, GPR149, LEKR1, MLF1, MME, P2RY1, RSRC1, LXN, CCNL1, PTX3, RAP2B, RARRES1, PA2G4P4, SHOX2, MFSD1, SSR3, LINC00886, KCNAB1, VEPH1, GFM1, GMPS, SLC33A1) 0.410209602581145 46 0.100135919706462 1.15018301069015 2603 0.707554608814456 3 2 1 -6.87057277279207 LTS-022 chr3 158520484 158545199 24716 * MFSD1 NA 0 NA 1.37218366052668 91 0.732700371857852 4 NA NA -5.76451092492902 LTS-022 chr3 158545200 158546636 1437 * MFSD1 NA 0 NA 0.577 1 NA NA NA NA NA LTS-022 chr3 158546637 159738355 1191719 * c(MIR3919, IQCJ-SCHIP1, SCHIP1, IL12A, MFSD1, IQCJ) 0.211 1 NA 0.84970299887253 245 0.485667890813548 2 2 0 -5.76443135905737 LTS-022 chr3 159738356 167761364 8023009 * c(SMC4, LOC101243545, PDCD10, OTOL1, PPM1L, WDR49, SPTSSB, SLITRK3, GOLIM4, TRIM59, KPNA4, C3orf80, MIR15B, MIR16-2, NMD3, SERPINI1, SERPINI2, IFT80, BCHE, LINC01330, LINC01192, SI, SCARNA7, ZBBX, ARL14, B3GALNT1) 0.2673997331249 49 0.124253290105497 0.907862928209646 2170 0.631989662227063 2 2 0 -7.35824272465394 LTS-022 chr3 167761365 167762544 1180 * GOLIM4 NA 0 NA 1.37 1 NA NA NA NA NA LTS-022 chr3 167762545 182991223 15228679 * c(LOC100128164, LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, DNAJC19, TTC14, LRRC34, ECT2, RPL22L1, MECOM, NLGN1, TNIK, MCF2L2, ATP11B, NAALADL2, GHSR, GPR160, LAMP3, KCNMB3, GOLIM4, CCDC39, LRRIQ4, SAMD7, SOX2-OT, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, PIK3CA, PLD1, DCUN1D1, MFN1, PRKCI, MYNN, EIF5A2, MCCC1, MRPL47, NCEH1, SLC7A14, GNB4, ZMAT3, FNDC3B, SKIL, SLC2A2, SOX2, MIR551B, NA NA NA NA NA NA NA NA NA LTS-022 MIR569, TERC, SEC62, TBL1XR1, LRRC31, PHC3, FXR1, SPATA16, B3GNT5, ACTRT3, ACTL6A, TNFSF10, USP13, EGFEM1P) 0.226665911531231 90 0.0962889955377711 1.16312885357856 6179 0.766207789636273 3 3 0 -7.58488764596907 LTS-022 NA NA NA NA LTS-022 chr3 182991224 186024805 3033582 * c(MIR1224, LINC00888, ABCC5, ABCC5-AS1, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, DGKG, HTR3C, DVL3, EHHADH, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, MCF2L2, VPS8, HTR3E, C3orf70, EHHADH-AS1, NMRAL1P1, POLR2H, KLHL24, ABCF3, PARL, YEATS2, PSMD2, SENP2, MAGEF1, TRA2B, IGF2BP2-AS1, SNORD66, THPO, MAP6D1, CHRD, EIF2B5, KLHL6, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.220382892877586 70 0.0977532968208105 1.37260466809072 4649 0.779355207699024 5 4 1 -6.94092518647274 LTS-022 chr3 186024806 186370347 345542 * c(CRYGS, DGKG, AHSG, LOC253573, FETUB, DNAJB11, TBCCD1) 0.232101351571842 7 0.111859818735858 1.01625973638261 267 0.574965414942446 5 4 1 -6.92106586714709 LTS-022 chr3 186370348 186370350 3 * FETUB 0.293 1 NA 1.088 1 NA NA NA NA NA LTS-022 chr3 186370351 190991439 4621089 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, CLDN16, RPL39L, TMEM207, RTP1, EIF4A2, UTS2B, FETUB, TPRG1, HRG, LPP-AS2, RTP2, OSTN, IL1RAP, KNG1, FLJ42393, LPP, P3H2, MASP1, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, ST6GAL1, SST, SNORA81, TP63, CLDN1, ADIPOQ) 0.294068362264511 79 0.0829006338486168 1.02882957586308 2439 0.571473563146311 3 2 1 -7.21561316801017 LTS-022 chr3 190991440 191110947 119508 * c(CCDC50, UTS2B) 0.234 1 NA 0.990601705768284 121 0.367990041150131 3 3 0 -5.77652508329184 LTS-022 chr3 191110948 191860769 749822 * c(CCDC50, PYDC2, FGF12) 0 1 NA 0.994529176821831 145 0.597253183043148 3 3 0 -5.79170870982634 LTS-022 chr3 191860770 195710993 3850224 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, TNK2, LRRC15, FAM43A, CPN2, MB21D2, XXYLT1, MUC20, FGF12, ACAP2, SDHAP1, GP5, HES1, ATP13A5, APOD, LINC00884, MUC4, OPA1, PPP1R2, LSG1, HRASLS, LOC647323, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, TMEM44) 0.192783555864556 84 0.127353242571889 1.42660462174908 2534 0.907818346317952 5 4 1 -6.93997559491685 LTS-022 chr3 195710994 195777211 66218 * c(SDHAP1, TFRC) 0.071 1 NA 1.02112753683688 29 0.642338803071272 3 3 0 -5.76582108537979 LTS-022 chr3 195777212 195956727 179516 * c(ZDHHC19, SLC51A, LINC00885, TFRC) 0.0838795794037681 9 0.04651105006101 1.3881139559769 215 0.74394854148944 4 4 0 -6.73465396817941 LTS-022 chr3 195956728 197665599 1708872 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, RUBCN) 0.092225649639827 62 0.0501010190514595 1.17830510676122 2442 0.685687337900409 3 3 0 -6.76376604669507 LTS-022 chr3 197665600 197770512 104913 * c(RPL35A, IQCG, LMLN) NA 0 NA 1.19614485753213 219 0.583395790416893 3 NA NA -5.76466514820893 LTS-022 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.27 1 NA 0.702691272619627 13 0.292716060898086 2 2 0 -5.76616922292194 LTS-022 chr4 60336 3516689 3456354 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, DOK7, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NA NA NA NA NA NA NA NA NA LTS-022 NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.209236867029223 82 0.0813738847773529 0.64039368307175 6071 0.361756060699858 1 1 0 -7.15029795234114 LTS-022 NA NA NA NA LTS-022 chr4 3516690 3589560 72871 * c(LINC00955, LRPAP1) 0.41 1 NA 0.707189086904365 42 0.444313897082383 2 2 0 -5.77165246494336 LTS-022 chr4 3589561 4239539 649979 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP, TMEM128) 0.409300954510799 24 0.0907876962870049 0.614065293598941 142 0.452309932123795 2 1 1 -6.9246052832348 LTS-022 chr4 4239540 4249884 10345 * TMEM128 0.23 1 NA 0.44211027991064 27 0.24757252815116 1 1 0 -5.76863747056928 LTS-022 chr4 4249885 6625107 2375223 * c(STX18-AS1, MIR378D1, LINC01587, EVC2, CRMP1, JAKMIP1, ZBTB49, EVC, MAN2B2, NSG1, LOC285484, MSX1, STX18, CYTL1, PPP2R2C, STK32B, LYAR, WFS1, TMEM128) 0.198971421984444 37 0.0948614447164584 0.621003715237632 1636 0.405844218077063 1 1 0 -6.91475759037986 LTS-022 chr4 6625108 6642420 17313 * MRFAP1 NA 0 NA 0.304 1 NA NA NA NA NA LTS-022 chr4 6642421 7640242 997822 * c(LOC100129931, MIR4274, MIR4798, MRFAP1L1, CCDC96, BLOC1S4, TBC1D14, SORCS2, S100P, FLJ36777, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.215043233096274 34 0.0754769563823392 0.520998154629634 807 0.259279878893669 1 1 0 -6.74922158020125 LTS-022 chr4 7640243 7655770 15528 * SORCS2 NA 0 NA 0.81 1 NA NA NA NA NA LTS-022 chr4 7655771 10105722 2449952 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SH3TC1, SLC2A9, SORCS2, AFAP1, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, ACOX3, ABLIM2, AFAP1-AS1, CPZ, HTRA3, WDR1) 0.193502661664957 46 0.0732626800619188 0.694484461011682 1460 0.359766631281364 1 1 0 -7.43038916028238 LTS-022 chr4 10105723 11401759 1296037 * c(CLNK, MIR572, ZNF518B, WDR1, HS3ST1) 0.231830553513702 3 0.043844421918111 0.511501513030751 495 0.251147015738784 1 1 0 -6.82437061159213 LTS-022 chr4 13369396 13529990 160595 * c(LINC01097, RAB28) 0.5 1 NA 0.877136527838328 87 0.401753483204615 2 2 0 -5.76511739224845 LTS-022 chr4 13529991 17635431 4105441 * c(MIR5091, MIR548AX, C1QTNF7, CPEB2, LINC01085, TAPT1, TAPT1-AS1, BOD1L1, FBXL5, FAM184B, LINC01097, LINC01096, FAM200B, CPEB2-AS1, LAP3, CC2D2A, NKX3-2, QDPR, CLRN2, BST1, MED28, FGFBP2, PROM1, LDB2, CD38, FGFBP1) 0.422119700836187 54 0.0981788414357206 0.89645507428087 1984 0.670672338933068 2 1 1 -6.76002926981819 LTS-022 chr4 17635432 17805039 169608 * c(FAM184B, DCAF16) 0.349563095392186 5 0.205794314790278 1.55236248730422 160 0.881549006346002 6 4 2 -6.74378473408683 LTS-022 chr4 17805040 17805120 81 * DCAF16 NA 0 NA 0.675 1 NA NA NA NA NA LTS-022 chr4 17805121 42404257 24599137 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, SLC30A9, SLC34A2, PTTG2, PPARGC1A, LIAS, ARAP2, PACRGL, SHISA3, KLB, DHX15, ADGRA3, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, LCORL, DCAF4L1, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, LOC344967, RBPJ, KCNIP4-IT1, SMIM20, BEND4, RHOH, DTHD1, LOC401127, MIR218-1, PCDH7, KLHL5, SEPSECS, KLF3, RBM47, DCAF16, TMEM33, LGI2, PGM2, NA NA NA NA NA NA NA NA NA LTS-022 C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, NWD2, STIM2, WDR19, GBA3, RFC1, RPL9, NCAPG, SOD3, MIR573, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, KCNIP4, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1, SLIT2) 0.399353675974016 173 0.123922795543339 0.861061666198778 7600 0.521550289826812 2 1 1 -6.75085476603843 LTS-022 NA NA NA NA LTS-022 chr4 42404258 48536555 6132298 * c(ATP8A1, CORIN, CNGA1, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, KCTD8, GRXCR1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK) 0.366384909872219 58 0.150608177231523 0.740594412405008 2735 0.414676783593601 2 1 1 -7.14755160267356 LTS-022 chr4 48536556 49064107 527552 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.832976405500273 441 1.24173937451537 2 NA NA -5.76447111632495 LTS-022 chr4 52709193 52961668 252476 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0 1 NA 0.918597260722886 399 0.526388061502444 2 2 0 -5.76796027519971 LTS-022 chr4 52961669 68906179 15944511 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NA NA NA NA NA NA NA NA NA LTS-022 NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.4194179158802 108 0.103433775255574 0.850236283756635 4260 0.481755847979444 2 1 1 -6.73887745398228 LTS-022 NA NA NA NA LTS-022 chr4 68906180 68908146 1967 * UBA6-AS1 0.439 1 NA 0.303835266714397 50 0.169320708860374 0 0 0 -5.76692356299003 LTS-022 chr4 68908147 68918917 10771 * c(TMPRSS11F, UBA6-AS1) NA 0 NA 0.795 1 NA NA NA NA NA LTS-022 chr4 68918918 71202163 2283246 * c(FTLP10, CSN1S2BP, UGT2B11, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, FDCSP, SULT1B1, CSN1S2AP, HTN1, HTN3, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, UGT2B28, ODAM, UBA6-AS1, LOC550113, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17, CABS1) 0.377046788711404 38 0.144804329151823 0.703722836352667 1240 0.567478379365144 2 1 1 -6.90665332233653 LTS-022 chr4 71202164 71227718 25555 * c(SMR3B, SMR3A, CABS1) NA 0 NA 0.27 1 NA NA NA NA NA LTS-022 chr4 71227719 71265090 37372 * c(SMR3B, SMR3A, OPRPN) 0.476 1 NA 0.367718200681174 42 0.137682774730928 1 1 0 -5.93794754183051 LTS-022 chr4 71265091 71275057 9967 * OPRPN NA 0 NA 1.208 1 NA NA NA NA NA LTS-022 chr4 71275058 88084448 16809391 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, ENAM, CDS1, CXCL13, HPSE, NPFFR2, PPBPP2, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, THAP6, C4orf26, RASGEF1B, DCK, RASSF6, AFM, AFP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, EPGN, AMBN, PARM1, RCHY1, ANKRD17, GC, GK2, NAAA, COQ2, COX18, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, NA NA NA NA NA NA NA NA NA LTS-022 CCDC158, SOWAHB, SLC10A6, JCHAIN, CXCL8, CXCL10, AREG, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, PLAC8, PF4, PF4V1, NUP54, PPEF2, PPBP, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, PRDM8, UTP3, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, BTC, MIR575, LOC728040, THAP9, SCD5, FRAS1, ARHGAP24, FAM175A, NAA11, GPAT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.411326584744687 208 0.110756303019247 0.876322628808816 10410 0.506910419975703 2 1 1 -6.77688759398502 LTS-022 NA NA NA NA LTS-022 chr4 88084449 96762592 8678144 * c(MIR5705, PYURF, FAM13A, PDLIM5, PPM1K, TIGD2, DMP1, DSPP, MMRN1, NAP1L5, HPGDS, FAM13A-AS1, GPRIN3, GRID2, IBSP, HSD17B13, CCSER1, ATOH1, HSD17B11, HERC5, PDHA2, PKD2, NUDT9, HERC6, SMARCAD1, MEPE, KLHL8, SNCA-AS1, BMPR1B, SNCA, SPP1, SPARCL1, UNC5C, HERC3, ABCG2) 0.411952567846382 84 0.0929196432275382 0.78921247811685 3433 0.477799345350907 2 1 1 -6.84688347842983 LTS-022 chr4 98105284 99983943 1878660 * c(MIR3684, TSPAN5, STPG2-AS1, EIF4E, METAP1, STPG2, RAP1GDS1) 0.398019666768489 18 0.0865771030425587 1.24241082493146 684 0.816590132708058 4 2 2 -6.786571988278 LTS-022 chr4 99983944 104507990 4524047 * c(LOC100507053, LINC01216, CENPE, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, METAP1, LOC256880, DAPP1, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, BANK1, PPP3CA, BDH2, SLC39A8, UBE2D3, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.37126368294718 54 0.0796029037919059 0.952616776109633 2658 0.601268738172112 2 1 1 -6.97003826950087 LTS-022 chr4 104507991 111484156 6976166 * c(GIMD1, SEC24B-AS1, ARHGEF38-IT1, SEC24B, RRH, CYP2U1, SGMS2, EGF, ENPEP, NPNT, PPA2, DKK2, RPL34-AS1, HADH, CFI, LRIT3, LEF1, GAR1, TET2, ARHGEF38, MCUB, INTS12, OSTC, RPL34, LEF1-AS1, ETNPPL, TACR3, ELOVL6, GSTCD, CXXC4, PLA2G12A, CASP6, COL25A1, PAPSS1, AIMP1, TBCK) 0.361610766967939 55 0.155662931194771 0.789861033499037 3339 0.508835817723838 2 1 1 -6.86854516400601 LTS-022 chr4 111484157 119388948 7904792 * c(SNHG8, MIR1243, MIR1973, C4orf32, TRAM1L1, ENPEP, ANK2, MIR302B, LARP7, PITX2, ZGRF1, AP1AR, NEUROG2, NDST4, SNORA24, MIR577, UGT8, ARSJ, ALPK1, CAMK2D, PRSS12, TIFA, NDST3) 0.400119314243025 44 0.105998371980796 0.924307496650885 2226 0.618995557272322 2 1 1 -6.82967138900418 LTS-022 chr4 119388949 119399800 10852 * character(0) NA 0 NA 0.547 1 NA NA NA NA NA LTS-022 chr4 119399801 119607828 208028 * c(METTL14, CEP170P1) 0.226 1 NA 0.486386677605769 180 0.356229899255419 1 1 0 -5.77606264144045 LTS-022 chr4 119607829 119609021 1193 * METTL14 NA 0 NA 0.899 1 NA NA NA NA NA LTS-022 chr4 119609022 122053553 2444532 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, TNIP3, PDE5A, SEC24D) 0.434096270991677 33 0.0494794684998768 0.955016468149151 1324 0.557900987190374 2 1 1 -6.94318947131582 LTS-022 chr4 122053554 122053665 112 * TNIP3 NA 0 NA 0.645 1 NA NA NA NA NA LTS-022 chr4 122053666 126408785 4355120 * c(PP12613, SPRY1, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, FGF2, LINC01091, ANXA5, IL2, EXOSC9, BBS7, ANKRD50, IL21, TRPC3, CETN4P, FAT4, TNIP3, QRFPR, KIAA1109, CCNA2) 0.404375790060904 59 0.0965721885927053 0.756539813515637 2075 0.690470415749992 2 1 1 -6.80455428911524 LTS-022 chr4 126408786 126411047 2262 * FAT4 NA 0 NA 2.236 1 NA NA NA NA NA LTS-022 chr4 126411048 146046333 19635286 * c(SCOC-AS1, MIR2054, LINC00499, ANAPC10, PGRMC2, CLGN, PLK4, SCLT1, C4orf33, PABPC4L, MGAT4D, FREM3, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, GYPA, GYPB, GYPE, IL15, MGST2, GUSBP5, NDUFC1, PCDH18, LARP1B, MAML3, RNF150, PCDH10, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, HHIP-AS1, UCP1, FAT4, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, USP38, SMARCA5, MGARP, NA NA NA NA NA NA NA NA NA LTS-022 INPP4B) 0.399589040875696 72 0.132669530131647 0.920124381090257 5171 0.522002657996081 2 1 1 -7.01565557169361 LTS-022 NA NA NA NA LTS-022 chr4 146046334 146048544 2211 * ABCE1 NA 0 NA 0.635 1 NA NA NA NA NA LTS-022 chr4 146048545 146058811 10267 * c(OTUD4, ABCE1) 0.382755593301934 3 0.115361749871148 0.528433973767038 131 0.26176408764523 2 1 1 -6.78532063987235 LTS-022 chr4 146058812 156643176 10584365 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, RBM46, EDNRA, TIGD4, TMEM154, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, RNF175, GUCY1A3, ANXA2P1, PRSS48, SMAD1, NR3C2, NPY2R, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, TMEM184C, RPS3A, SFRP2, C4orf51, TLR2, FAM160A1, ARHGAP10, MAP9, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRAT, LRBA) 0.383944601771859 108 0.130490976825539 1.00259810286879 4874 0.564643031644517 3 2 1 -7.11433133096217 LTS-022 chr4 156643177 156643735 559 * GUCY1A3 NA 0 NA 0.867361465517575 11 0.306180695312128 2 NA NA -5.76441205936346 LTS-022 chr4 156643736 156651171 7436 * GUCY1A3 NA 0 NA 0.248 1 NA NA NA NA NA LTS-022 chr4 156651172 156706412 55241 * c(GUCY1A3, GUCY1B3) 0.095 1 NA 0.561813397060198 75 0.243495176340109 1 1 0 -5.7651033284073 LTS-022 chr4 156706413 167921617 11215205 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, KLHL2, CPE, CTSO, FAM218A, C4orf45, TRIM60, C4orf46, TMEM192, ETFDH, ANP32C, GK3P, GLRB, GRIA2, GUCY1B3, LOC340017, TRIM61, NPY1R, NPY5R, SPOCK3, FAM198B, ASIC5, PPID, MARCH1, TMEM144, TMA16, PDGFC, FSTL5, FNIP2, RXFP1, MSMO1, MIR578, TDO2, TLL1, TKTL2, NAF1, RAPGEF2) 0.22513756258571 51 0.111626646618512 0.536664633930088 3097 0.350179244421053 1 1 0 -6.74085705912332 LTS-022 chr4 167921618 167932353 10736 * SPOCK3 NA 0 NA 0.714 1 NA NA NA NA NA LTS-022 chr4 167932354 174169369 6237016 * c(LOC100506085, LOC100506122, ANXA10, CLCN3, PALLD, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, HPF1, DDX60, SH3RF1, CBR4, DDX60L, MFAP3L) 0.183012001102744 27 0.119669749740062 0.626883105335877 1724 0.420880868697273 1 1 0 -7.20061070461193 LTS-022 chr4 174169370 184240537 10071168 * c(MIR1305, MIR4276, ADAM29, SCRG1, WDR17, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, FAM92A1P2, GALNT7, CLDN22, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, SAP30, LOC90768, HAND2) 0.203217939157896 52 0.088845893321982 0.515353161683634 2259 0.39334947435119 1 1 0 -6.85269993473438 LTS-022 chr4 184240538 184240644 107 * c(CLDN22, WWC2) NA 0 NA 0.377 1 NA NA NA NA NA LTS-022 chr4 184240645 184577274 336630 * c(CLDN24, RWDD4, ING2, LOC389247, CLDN22, CDKN2AIP, WWC2) 0.18308523631498 4 0.0397523584206019 0.363248345812853 219 0.238960977286554 1 1 0 -7.7121549169501 LTS-022 chr4 184577275 184580288 3014 * RWDD4 NA 0 NA 0.796 1 NA NA NA NA NA LTS-022 chr4 184580289 190878661 6298373 * c(MIR3945, LINC01093, ZFP42, ENPP6, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, SLC25A4, LOC339975, TRIML1, ANKRD37, IRF2, KLKB1, HELT, LINC01060, C4orf47, MTNR1A, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, FLJ38576, TLR3, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.246956466311841 64 0.098051649614188 0.567704179740684 2986 0.320822359687168 1 1 0 -6.85623285462187 LTS-022 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.653786019441068 52 1.40002157708001 1 NA NA -5.76550943169659 LTS-022 chr5 140347 140788 442 * PLEKHG4B 0.175 1 NA 4.74944659616272 9 6.10290751290818 15 15 0 -5.76441013592875 LTS-022 chr5 140789 4420591 4279803 * c(PDCD6, MIR4277, LOC100506688, MIR4457, MIR4456, MIR4635, LOC100996325, SLC12A7, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, C5orf38, IRX2, PP7080, LINC01019, SLC6A19, SLC6A18, LRRC14B, NDUFS6, IRX4, CEP72, AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, TERT, SDHAP3, LOC728613, IRX1, ZDHHC11, LPCAT1, CLPTM1L, NKD2, TRIP13) 0.222852210459206 103 0.0879007225593798 2.27383055895271 2959 1.36152007405586 6 5 1 -6.76906661786143 LTS-022 chr5 4420592 4830612 410021 * character(0) NA 0 NA 1.075 1 NA NA NA NA NA LTS-022 chr5 4830613 5319216 488604 * c(ADAMTS16, LINC01020) 0.21420466814646 10 0.124694337392593 1.59378961182018 168 1.07301000402657 6 5 1 -6.75323335303315 LTS-022 chr5 5319217 5319407 191 * ADAMTS16 0.29 1 NA 1.78683925705092 5 0.708366218844462 5 5 0 -5.76441017664055 LTS-022 chr5 5319408 9202149 3882742 * c(MIR4278, MIR4458HG, MIR4458, MIR4454, MIR4636, ADCY2, PAPD7, UBE2QL1, C5orf49, ADAMTS16, ICE1, LINC01018, FLJ33360, LOC442132, MTRR, NSUN2, SRD5A1, LOC729506, FASTKD3, MED10, SEMA5A) 0.297972335913174 49 0.0981992152939816 1.30937246654744 1406 0.793083828687941 4 3 1 -6.77877776200463 LTS-022 chr5 9202150 10509354 1307205 * c(SNORD123, SNHG18, ROPN1L-AS1, MARCH6, FAM173B, CMBL, CCT5, LOC285692, TAS2R1, ROPN1L, SEMA5A) 0.309063908816852 10 0.147219752599831 0.989718433500811 527 0.773638093134869 3 2 1 -6.83905554777571 LTS-022 chr5 10509355 10564392 55038 * character(0) NA 0 NA 3.264 1 NA NA NA NA NA LTS-022 chr5 10564393 19473397 8909005 * c(LOC100130744, MIR4637, CDH18, BASP1, CTNND2, DAP, DNAH5, FBXL7, LOC285696, LOC401177, LINC01194, MARCH11, MYO10, FAM134B, FAM105A, ANKH, ANKRD33B, TRIO, OTULIN, ZNF622) 0.277916698365914 47 0.113325972897699 1.48174846836863 2332 0.809926653068178 4 3 1 -6.74265968834006 LTS-022 chr5 19473398 31324502 11851105 * c(CDH6, CDH9, CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.220602145835024 9 0.145591036812024 1.0508737057752 591 0.643000246525863 3 3 0 -7.24187274952277 LTS-022 chr5 31324503 31324601 99 * CDH6 NA 0 NA 1.341 1 NA NA NA NA NA LTS-022 chr5 31324602 37813540 6488939 * c(CDH6, MIR4279, SUB1, C1QTNF3, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, AMACR, NIPBL, RAI14, GDNF, DROSHA, LOC340113, IL7R, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRLR, RAD1, GOLPH3, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, SPEF2, ADAMTS12, LMBRD2, NUP155) 0.318698362097943 86 0.0922107382371382 1.29542438266199 5270 0.73425333917832 4 3 1 -6.88732178704839 LTS-022 chr5 37813541 37814148 608 * GDNF 0.483 1 NA 3.20985603590413 9 2.77997424048817 10 10 0 -5.76441016201038 LTS-022 chr5 37814149 37814472 324 * GDNF NA 0 NA 1.17501015645061 8 0.468237863087311 3 NA NA -5.76441046413153 LTS-022 chr5 37814473 43352105 5537633 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, EGFLAM-AS4, GDNF-AS1, MROH2B, EGFLAM, LOC153684, DAB2, NIM1K, TTC33, RICTOR, FYB, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, ANXA2R, LIFR, OXCT1, PRKAA1, PTGER4, RPL37, SNORD72, SELENOP, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.402664738619397 36 0.111786882695856 0.809356480875384 3236 0.474034752175645 2 1 1 -6.76646245819169 LTS-022 chr5 43352106 43379529 27424 * CCL28 NA 0 NA 1.922 1 NA NA NA NA NA LTS-022 chr5 43379530 43381824 2295 * CCL28 NA 0 NA 2.36607795436062 40 1.35321011856991 7 NA NA -5.76441014084817 LTS-022 chr5 43381825 44812133 1430309 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, C5orf34, CCL28, TMEM267) 0.290175544814185 4 0.213175201809842 0.759262070089025 488 0.601650409011089 2 1 1 -6.94414391223185 LTS-022 chr5 44812134 45696278 884145 * c(MRPS30, HCN1) NA 0 NA 0.833332640249168 141 0.456290252835656 2 NA NA -5.7651298640961 LTS-022 chr5 49692017 50040778 348762 * c(EMB, PARP8) 0.465 1 NA 0.525027912123581 115 0.274286998023085 1 1 0 -5.76734700384259 LTS-022 chr5 50040779 52098126 2057348 * c(ISL1, ITGA1, PELO, LOC642366, PARP8) 0.420634863817961 8 0.0464903983942614 0.628751674435416 378 0.371836636616787 2 1 1 -7.47230652275015 LTS-022 chr5 52098127 61779988 9681862 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, RNF138P1, KIF2A, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, SMIM15, GPBP1, MIR449B, MIR581, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.438364342492665 108 0.0475086773149349 0.788757823863849 4487 0.474978741993079 2 1 1 -7.07517580309154 LTS-022 chr5 61779989 61781203 1215 * IPO11 NA 0 NA 2.643 1 NA NA NA NA NA LTS-022 chr5 61781204 61857086 75883 * IPO11 0.378 1 NA 1.46257325882943 69 0.827178898481929 4 4 0 -5.76441089824005 LTS-022 chr5 61857087 61923349 66263 * c(LRRC70, IPO11-LRRC70, IPO11) NA 0 NA 0.42412009937337 68 0.277992652093695 1 NA NA -5.79536682321404 LTS-022 chr5 61923350 65466045 3542696 * c(FAM159B, LOC100303749, IPO11-LRRC70, CWC27, ADAMTS6, SREK1, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, RGS7BP, IPO11, SGTB, ERBIN, NLN, CENPK, TRAPPC13) 0.441034887772936 13 0.0455199308277605 0.866331347361299 1757 0.724629282123487 2 1 1 -7.00836975543477 LTS-022 chr5 65466046 65478682 12637 * SREK1 0 1 NA 0.924568035486102 101 0.503753096641835 2 2 0 -5.76463670532432 LTS-022 chr5 65478683 66124657 645975 * c(SREK1, MAST4) 0.389 1 NA 0.966963033746641 47 0.323650899454727 2 2 0 -5.82812055723014 LTS-022 chr5 66124658 68390265 2265608 * c(MAST4, CD180, PIK3R1, SLC30A5) 0.216288423753399 5 0.057778023503751 0.510546324651707 630 0.247043638361836 1 1 0 -6.81493081250399 LTS-022 chr5 68390266 68396653 6388 * SLC30A5 NA 0 NA 1.187 1 NA NA NA NA NA LTS-022 chr5 68396654 68740198 343545 * c(CDK7, MARVELD2, CCDC125, RAD17, SLC30A5, CENPH, TAF9, CCNB1, MRPS36) 0.214969197504 17 0.0783625154236987 0.665497985695923 731 0.484147724416989 1 1 0 -6.77136903877953 LTS-022 chr5 68740199 68799972 59774 * OCLN NA 0 NA 0.284 1 NA NA NA NA NA LTS-022 chr5 68799973 70388996 1589024 * c(GUSBP9, NA, OCLN, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.25 1 NA 0.362849080085019 186 0.508520303269739 1 1 0 -6.30780935096324 LTS-022 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.62 1 NA NA NA NA NA LTS-022 chr5 70751404 82136073 11384670 * c(CKMT2-AS1, NCRUPAR, MTRNR2L2, MIR4804, MIR3977, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, CKMT2, JMY, TMEM171, TMEM174, POC5, ACOT12, CRHBP, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, ARSB, MAP1B, CRSP8P, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, RASGRF2, NA NA NA NA NA NA NA NA NA LTS-022 RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.226448635884224 158 0.0743194219669153 0.553853643494154 7560 0.382413029106579 1 1 0 -6.75913909672218 LTS-022 NA NA NA NA LTS-022 chr5 82136074 82348624 212551 * character(0) NA 0 NA 0.252 1 NA NA NA NA NA LTS-022 chr5 82348625 96364218 14015594 * c(ARRDC3-AS1, MIR2277, MIR4280, MIR3607, MIR3660, TMEM161B-AS1, EDIL3, POLR3G, CETN3, LYSMD3, POU5F2, COX7C, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, NBPF22P, RFESD, LNPEP, MIR9-2, MEF2C, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, RASA1, ERAP2, LINC00461, SCARNA18, MIR583, NR2F1, XRCC4, MCTP1, CAST, SPATA9, FAM172A, ADGRV1, SLF1, CCNH, TTC37) 0.245325419837137 76 0.0930477061191467 0.486324928880984 4919 0.289776006729436 1 1 0 -7.78327638100803 LTS-022 chr5 96364219 96364313 95 * LNPEP NA 0 NA 0.776 1 NA NA NA NA NA LTS-022 chr5 96364314 96430724 66411 * c(LIX1, LNPEP) 0.287404613963839 6 0.0564623768539724 0.724183887382229 251 0.361930855318903 4 3 1 -6.88014969468599 LTS-022 chr5 96430725 96432502 1778 * LIX1 NA 0 NA 0.35 1 NA NA NA NA NA LTS-022 chr5 96432503 112343795 15911293 * c(LOC100133050, LOC100289230, LOC100289673, STARD4-AS1, LINC01023, NREP-AS1, CHD1, EPB41L4A-AS1, SLCO6A1, STARD4, WDR36, DCP2, LIX1, EFNA5, FER, PPIP5K2, RGMB, APC, FAM174A, SLCO4C1, MAN2A1, RGMB-AS1, PAM, EPB41L4A-AS2, GIN1, RIOK2, EPB41L4A, TMEM232, FBXL17, SNORA13, SRP19, ST8SIA4, REEP5, CAMK4, NUDT12, TSLP, C5orf30, SLC25A46, NREP, RAB9BP1, PJA2) 0.257274154899119 80 0.0903521932722938 0.516045612231466 4001 0.311099145339058 1 1 0 -7.07246074253989 LTS-022 chr5 112343796 112351617 7822 * DCP2 0.237 1 NA 0.545793479316212 63 0.12694130828902 1 1 0 -5.76442164485725 LTS-022 chr5 112351618 122135564 9783947 * c(TMED7-TICAM2, LOC100505841, CDO1, AP3S1, ZNF474, MGC32805, SRFBP1, CCDC112, DMXL1, DCP2, LVRN, TNFAIP8, DTWD2, HSD17B4, FAM170A, TICAM2, KCNN2, LOX, MCC, TMED7, PRR16, COMMD10, PGGT1B, TRIM36, FEM1C, SEMA6A, ARL14EPL, YTHDC2, SNX2, LINC00992, TSSK1B, ATG12, FTMT, SNCAIP) 0.219297283804191 57 0.0884251308135787 0.538813539852141 3025 0.339504668962413 1 1 0 -6.73523735686379 LTS-022 chr5 122135565 122137537 1973 * SNX2 NA 0 NA 1.563 1 NA NA NA NA NA LTS-022 chr5 122137538 140166320 18028783 * c(SRA1, VTRNA2-1, MIR874, KIAA1024L, MIR1289-2, MIR3936, MIR3661, LINC01024, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, KIF20A, APBB3, SEC24A, BRD8, HNRNPA0, KIF3A, SLC35A4, MARCH3, LEAP2, PRRC1, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, CSNK1G3, CTNNA1, CEP120, SLC25A48, ZMAT2, ADAMTS19, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FBN2, FSTL4, SEPT8, ACSL6, JADE2, HARS2, LRRTM2, FBXL21, KLHL3, GDF9, GFRA3, NA NA NA NA NA NA NA NA NA LTS-022 SNORD63, SNORA74A, PKD2L2, UQCRQ, AFF4, SLC27A6, SNX24, HARS, HINT1, HSPA4, HSPA9, CHSY3, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, TEX43, LOC389332, PROB1, LECT2, LMNB1, C5orf63, ANKHD1-EIF4EBP3, SMAD5, C5orf56, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, ALDH7A1, ISOC1, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, CXXC5, RAPGEF6, KDM3B, PHAX, PFDN1, PITX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PPIC, ZCCHC10, WDR55, ANKHD1, PPP2CA, LOC553103, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, C5orf15, CDC42SE2, TRPC7, ZNF608, PURA, CTXN3, ECSCR, SIL1, LINC01184, CCNI2, SKP1, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, SPOCK1, TCF7, TGFBI, SNHG4, MEIKIN, UBE2B, UBE2D2, VDAC1, WNT8A, TXNDC15, CAMLG, SLC4A9, NME5, PCBD2, PSD2, CYSTM1, MEGF10, PDLIM4, EIF4EBP3, CDC23, P4HA2, LYRM7, CDKN2AIPNL, CD14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PRDM6, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, FNIP1, MATR3, DDX46, CDC25C, SLC23A1) 0.208796520634348 196 0.0935749270939519 0.579348934279606 13071 0.369535666828168 1 1 0 -7.06661130119457 LTS-022 NA NA NA NA LTS-022 chr5 140166321 140871400 705080 * c(PCDHGA12, PCDHB5, PCDHB1, PCDHGC3, PCDHB18P, PCDHB17P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, NA NA NA NA NA NA NA NA NA LTS-022 PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8, PCDHA9) 0.185352264936049 18 0.0980585392721256 0.443162631781094 2833 0.309846718903608 1 1 0 -6.97837667003635 LTS-022 NA NA NA NA LTS-022 chr5 140871401 147506704 6635304 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, C5orf46, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA LTS-022 PCDHGA1, KCTD16, HMHB1, GRXCR2, ARAP3, SPINK1, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.202261939673721 59 0.0907103791269551 0.591701787222275 3856 0.32436698789644 1 1 0 -7.02774366565902 LTS-022 NA NA NA NA LTS-022 chr5 147506705 147510795 4091 * SPINK5 NA 0 NA 0.243 1 NA NA NA NA NA LTS-022 chr5 147510796 148207705 696910 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.134270533165398 2 0.0558614357137373 0.403587088847388 427 0.234613182272051 1 1 0 -8.47282769113017 LTS-022 chr5 148207706 148207786 81 * c(ADRB2, SH3TC2) NA 0 NA 0.508 1 NA NA NA NA NA LTS-022 chr5 148207787 150110337 1902551 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, ADRB2, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, MYOZ3, CD74) 0.210519178917153 56 0.086590420798296 0.648441891039678 3571 0.639703579131056 1 1 0 -6.82677364556588 LTS-022 chr5 150110338 156479426 6369089 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, ZNF300P1, SLC36A2, PPP1R2P3, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, HAVCR1, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, NMUR2, SGCD, SPARC, SAP30L, SMIM3, TIMD4, ZNF300, CNOT8, HAND1) 0.187828366495444 62 0.0818394553800373 0.571366780089322 3753 0.353864442613809 1 1 0 -6.90163233736733 LTS-022 chr5 156479427 156482207 2781 * HAVCR1 0 1 NA 0.454294880398927 9 1.27565140222555 1 1 0 -5.76444232254754 LTS-022 chr5 156482208 156522442 40235 * c(HAVCR1, HAVCR2) 0.25 1 NA 0.506814286848221 53 0.275493718302946 1 1 0 -5.76587228212033 LTS-022 chr5 156522443 159797753 3275311 * c(C5orf52, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, FAM71B, RNF145, EBF1, FABP6, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, ITK, FNDC9, THG1L, TTC1, CCNJL, HAVCR2, ADAM19, MED7, CLINT1) 0.104273592973224 34 0.0727105033028419 0.919116145371898 2103 0.569949619564852 2 2 0 -6.91779410575154 LTS-022 chr5 159797754 159820165 22412 * ZBED8 NA 0 NA 0.487 1 NA NA NA NA NA LTS-022 chr5 159820166 167303152 7482987 * c(MIR3142, SLU7, NUDCD2, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, MIR146A, TENM2, ZBED8, CCNG1, PTTG1) 0.0798705705989728 15 0.106418222571316 0.735602184175845 1184 0.481361677467186 2 2 0 -7.28667824918442 LTS-022 chr5 167303153 168727622 1424470 * c(MIR103B1, WWC1, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, MIR585, PANK3) 0.126560061145312 15 0.0571811657303846 1.07444459259382 1054 0.567605166395739 3 3 0 -6.84295624765352 LTS-022 chr5 168727623 169015342 287720 * c(SPDL1, SLIT3) NA 0 NA 0.478 1 NA NA NA NA NA LTS-022 chr5 169015343 169690037 674695 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, LCP2, SPDL1) 0.0680679420934271 11 0.0849202834748833 0.759583419902445 649 0.594773854135345 3 3 0 -7.02773201361758 LTS-022 chr5 169690038 169693784 3747 * LCP2 NA 0 NA 1.367 1 NA NA NA NA NA LTS-022 chr5 169693785 174919230 5225446 * c(LOC100268168, MIR3912, MIR4634, C5orf47, NKX2-5, CREBRF, DRD1, DUSP1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, KCNMB1, LCP2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, ERGIC1, RANBP17, BNIP1, SNORA74B, STK10, CPEB4, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.106910278168351 39 0.0663227600603616 0.987175023342704 2681 0.633538259019507 3 3 0 -6.91647054488754 LTS-022 chr5 174919231 174935964 16734 * SFXN1 NA 0 NA 2.023 1 NA NA NA NA NA LTS-022 chr5 174935965 175386666 450702 * c(CPLX2, HRH2, THOC3, SFXN1) 0.0869311585406923 2 0.00777817459305202 1.45473796096587 306 0.68696896317801 4 4 0 -6.9801651589745 LTS-022 chr5 175386667 175394264 7598 * THOC3 NA 0 NA 0.34538057538561 77 0.304016637468785 0 NA NA -5.77135109192016 LTS-022 chr5 175394265 175395032 768 * THOC3 NA 0 NA 11.509 1 NA NA NA NA NA LTS-022 chr5 175395033 175740601 345569 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) 0.103 1 NA 1.04319200420902 144 1.35684656337493 3 3 0 -5.7655290624027 LTS-022 chr5 175740602 175740614 13 * SIMC1 NA 0 NA 1.278 1 NA NA NA NA NA LTS-022 chr5 175740615 177099274 1358660 * c(MIR4281, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.07538443559266 74 0.0442899658351236 1.48371480459747 3237 0.962090365662473 4 4 0 -6.74600582906975 LTS-022 chr5 177099275 177150966 51692 * c(LOC202181, FAM153A) NA 0 NA 0.465 1 NA NA NA NA NA LTS-022 chr5 177150967 177310913 159947 * c(FAM153A, LOC728554) 0.109 1 NA 0.590290302255121 149 0.470983657528954 1 1 0 -5.76750935518711 LTS-022 chr5 177310914 180661889 3350976 * c(MIR1229, MIR4638, HEIH, BTNL3, MGAT4B, ZNF354B, OR2Y1, BTNL9, TBC1D9B, N4BP3, FLT4, RASGEF1C, OR2V1, OR2V2, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, TRIM7, CANX, PHYKPL, SQSTM1, TRIM41, COL23A1, SCGB3A1, ADAMTS2, NA NA NA NA NA NA NA NA NA LTS-022 MAML1, GFPT2) 0.0898172663853816 129 0.0626232254231854 1.46996776696351 4304 0.989622329643462 4 4 0 -6.74290908013687 LTS-022 NA NA NA NA LTS-022 chr5 180661890 180688111 26222 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 1.09567250751551 163 0.626424823346508 3 NA NA -5.76451279180522 LTS-022 chr6 203389 335251 131863 * DUSP22 0.294 1 NA 1.06970229411759 35 0.335590461698769 3 3 0 -5.76831610344961 LTS-022 chr6 335252 14136770 13801519 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, MIR5689, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, EDN1, SERPINB1, PIP5K1P1, F13A1, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, FAM50B, GCNT2, GMDS, LINC01622, LY86-AS1, CAGE1, HIVEP1, MYLK4, TUBB2B, NA NA NA NA NA NA NA NA NA LTS-022 C6orf52, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, TMEM14C, SERPINB6, SERPINB9, GFOD1, ELOVL2, PAK1IP1, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, BLOC1S5, MCUR1, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, ADTRP, RIPK1, PRPF4B, GCM2, CD83, FOXQ1, CDYL, LY86, EEF1E1) 0.210360432816023 203 0.0786497142064073 1.35138467300301 7218 0.891242583229496 4 3 1 -7.35869828577168 LTS-022 NA NA NA NA LTS-022 chr6 14136771 17111023 2974253 * c(MIR4639, GMPR, MYLIP, JARID2, STMND1, ATXN1, DTNBP1, CD83) 0.198034007804831 9 0.0415361288518803 1.84454046835418 687 0.796880859282671 6 5 1 -6.78828982471147 LTS-022 chr6 17111024 17111122 99 * STMND1 NA 0 NA 1.995 1 NA NA NA NA NA LTS-022 chr6 17111123 17821964 710842 * c(CAP2, RBM24, STMND1, FAM8A1, KIF13A, NUP153) 0.211385345443462 16 0.0943998366877118 1.22656180320693 678 0.674404032950998 5 4 1 -6.91151105175412 LTS-022 chr6 17821965 17831419 9455 * KIF13A 0.288 1 NA 1.34255054421051 23 0.726704573777685 4 4 0 -5.76448277832783 LTS-022 chr6 17831420 24596868 6765449 * c(NRSN1, MBOAT1, HDGFL1, E2F3, KDM1B, RNF144B, GPLD1, ID4, KAAG1, NHLRC1, CASC15, DCDC2, CDKAL1, PRL, MRS2, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, KIAA0319) 0.258694296025192 57 0.0911119935212073 1.23743984638805 1923 0.867611164992032 4 3 1 -6.94669571549333 LTS-022 chr6 24596869 26600330 2003462 * c(SLC17A4, SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, HIST1H2AA, HIST1H2BA, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2APS1, HCG11, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, SLC17A1, BTN1A1, C6orf62, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, NA NA NA NA NA NA NA NA NA LTS-022 HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, CMAHP, HIST1H3F, FAM65B, KIAA0319) 0.281753862710069 54 0.0538348277534653 0.930838435997818 2465 0.532551707473746 4 3 1 -7.49929864100582 LTS-022 NA NA NA NA LTS-022 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.239 1 NA NA NA NA NA LTS-022 chr6 26636496 26638910 2415 * ZNF322 0.33 1 NA 0.320315916456795 49 0.139164403826974 0 0 0 -5.77113497811812 LTS-022 chr6 26638911 29571320 2932410 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-022 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.239159429439263 78 0.0892690001005634 0.913228793825187 2560 0.50798192259429 2 2 0 -7.42687293652194 LTS-022 NA NA NA NA LTS-022 chr6 29571321 30993784 1422464 * character(0) 0.271349590327535 141 0.0866598060568774 1.17107482472974 3238 0.698342912429348 4 3 1 -6.84500864953204 LTS-022 chr6 30993785 30997388 3604 * character(0) 0.2692759938682 14 0.0384141686314874 0.363466037018076 82 0.177168699600231 8 6 2 -6.99959289453087 LTS-022 chr6 30997389 32270363 1272975 * character(0) 0.26679424462355 244 0.0709679688833941 1.17961862716516 5254 1.0573830619728 4 3 1 -6.82990123410079 LTS-022 chr6 32270364 32270500 137 * character(0) 0.299 1 NA 1.54308842462926 3 0.552645757545766 4 4 0 -5.7644110019742 LTS-022 chr6 32270501 32338374 67874 * character(0) 0.299815846607 21 0.0528080531376652 1.21843137504983 184 0.533272834135799 4 3 1 -6.75608142339233 LTS-022 chr6 32338375 32339404 1030 * character(0) NA 0 NA 0.628 1 NA NA NA NA NA LTS-022 chr6 32339405 32713513 374109 * c(HLA-DQA1, HLA-DRB5) 0.341934414952986 147 0.0831917966805952 0.89296899350815 553 0.949141506046875 3 2 1 -6.78294499882659 LTS-022 chr6 32713514 32713598 85 * character(0) 0.302 1 NA 2.779 1 NA NA NA NA NA LTS-022 chr6 32713599 33054091 340493 * character(0) 0.304736422995414 120 0.0826084144627896 1.14387035060467 991 2.00419288318071 4 3 1 -6.75368358371021 LTS-022 chr6 33054092 33054268 177 * character(0) 0.468 1 NA 0.885695349943512 5 0.156649289816456 2 2 0 -5.76441851607232 LTS-022 chr6 33054269 33054721 453 * character(0) 0.477597967066715 14 0.0196054488949788 1.15269300244529 35 5.45960015311861 0 0 0 -10.3965896487385 LTS-022 chr6 33054722 33054807 86 * character(0) 0.189 1 NA 1.03731156625316 3 0.128958649703435 3 3 0 -5.76444416264159 LTS-022 chr6 33054808 39298919 6244112 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-022 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, KCNK16, UQCC2, KCNK5, KCNK17, RNF8) 0.250749902382463 184 0.0733367793311171 1.18588496636418 8535 0.726563954736246 4 3 1 -7.19249939476019 LTS-022 NA NA NA NA LTS-022 chr6 39298920 39299057 138 * character(0) NA 0 NA 2.796 1 NA NA NA NA NA LTS-022 chr6 39299058 44201902 4902845 * c(LINC01512, TOMM6, MIR4641, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, FOXP4, KLHDC3, TAF8, PTCRA, SLC29A1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, CUL9, UBR2, DAAM2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, ATP6V0CP3, NFYA, MRPL2, PEX6, PGC, TREM2, TREM1, POLH, NA NA NA NA NA NA NA NA NA LTS-022 GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, LRFN2, XPO5, PTK7, PRPH2, C6orf132, MRPL14, DLK2, SRF, TBCC, BYSL, TDRG1, VEGFA, TFEB, TREML2, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, NCR2, MED20, POLR1C, MAD2L1BP, CUL7) 0.244471115893739 139 0.0904449830782713 1.28453784535271 6765 0.767886503053459 4 3 1 -6.96347494005646 LTS-022 NA NA NA NA LTS-022 chr6 44201903 44216216 14314 * HSP90AB1 NA 0 NA 1.152 1 NA NA NA NA NA LTS-022 chr6 44216217 47800390 3584174 * c(ANKRD66, MIR4647, MIR4642, RCAN2, TCTE1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, ADGRF2, ENPP4, CD2AP, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, MEP1A, TMEM151B, NFKBIE, CYP39A1, CLIC5, AARS2, ENPP5, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.238218897475388 59 0.0886945684681152 1.06685681973825 2587 0.568032938579132 4 3 1 -7.5225431916235 LTS-022 chr6 47800391 47869426 69036 * PTCHD4 0.312 1 NA 0.994584219914529 77 0.429827493652261 3 3 0 -5.76927733579044 LTS-022 chr6 47869427 49398861 1529435 * c(PTCHD4, MUT) 0.408503799356199 2 0.0756604255869606 1.07402121926169 50 0.474576575614989 2 1 1 -6.95356727127618 LTS-022 chr6 49398862 49398930 69 * MUT NA 0 NA 0.799 1 NA NA NA NA NA LTS-022 chr6 49398931 58445574 9046644 * c(MIR5685, MLIP-IT1, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, FAM83B, ICK, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GUSBP4, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, MUT, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, LRRC1, PRIM2, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, CRISP2, LOC730101, GSTA7P, NA NA NA NA NA NA NA NA NA LTS-022 COL21A1, TFAP2D, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.350895374264411 129 0.105923945675385 0.672723864105333 5169 0.402259022455974 2 1 1 -8.31469194881953 LTS-022 NA NA NA NA LTS-022 chr6 58445575 58445634 60 * character(0) NA 0 NA 0.331 1 NA NA NA NA NA LTS-022 chr6 62390154 62407067 16914 * KHDRBS2 0.438 1 NA 0.79232474976406 23 0.410120781399783 2 2 0 -5.76468313608217 LTS-022 chr6 62407068 70098901 7691834 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, ADGRB3, PTP4A1) 0.395172543961726 13 0.0686919918446812 0.571139318389624 1096 0.34155850272648 1 1 0 -9.35166711263895 LTS-022 chr6 70098902 70099000 99 * ADGRB3 NA 0 NA 0.599 1 NA NA NA NA NA LTS-022 chr6 70099001 101306061 31207061 * c(KHDC1L, TSTD3, HMGN3-AS1, MIR2113, MIR4282, LOC100506804, MIR4464, MIR4643, KCNQ5-AS1, SYNCRIP, SLC35A1, FUT9, CGA, PNRC1, ASCC3, MRAP2, RWDD2A, KLHL32, MB21D1, CNR1, COL9A1, COL12A1, COL19A1, COX7A2, RIPPLY2, IRAK1BP1, B3GAT2, SDHAF4, CD109, PM20D2, SRSF12, KHDC3L, CFAP206, PRSS35, LCA5, EEF1A1, EPHA7, C6orf163, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, MDN1, UFL1, ORC3, MMS22L, GABRR1, GABRR2, MTO1, NA NA NA NA NA NA NA NA NA LTS-022 PNISR, IBTK, SENP6, FBXL4, SLC17A5, SNORD50A, FILIP1, NDUFAF4, HTR1B, HTR1E, DPPA5, IMPG1, GJB7, SNHG5, NA, MIR30A, MIR30C2, ME1, OOEP, MYO6, NT5E, CYB5R4, UBE2J1, COQ3, PGM3, POU3F2, PHIP, AKIRIN2, DDX43, FAM46A, TMEM30A, LMBRD1, KCNQ5, RARS2, SMIM8, LYRM2, SNX14, FAM135A, ADGRB3, RRAGD, PRDM13, BCKDHB, BACH2, SMAP1, RNY4, LINC01590, TSG1, SIM1, ELOVL4, MAP3K7, SNORD50B, TPBG, TTK, MCHR2-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 OGFRL1, MANEA, LINC00472, KHDC1, GPR63, SPACA1, SH3BGRL2, MCHR2, FAXC, GJA10, USP45, RNGTT, CCNC, LINC01621, UBE3D, TBX18, HMGN3, FHL5, SNAP91, CASP8AP2) 0.381983437227376 184 0.128823896507889 0.723434632124126 12245 0.434655246329149 2 1 1 -8.56870918034443 LTS-022 NA NA NA NA LTS-022 chr6 101306062 102513865 1207804 * c(ASCC3, GRIK2) 0.378585247985786 4 0.051720402163943 0.493618499186022 140 0.343112702427814 2 1 1 -8.35018501137947 LTS-022 chr6 102513866 105192363 2678498 * c(GRIK2, HACE1) 0.267 1 NA 0.536929598227454 84 0.271237034399073 1 1 0 -5.76663184006158 LTS-022 chr6 105192364 106553503 1361140 * c(LIN28B-AS1, BVES, BVES-AS1, LIN28B, PREP, HACE1, PRDM1, POPDC3) 0.222904603274656 12 0.0580414559264377 0.544244310768815 646 0.344463434409429 1 1 0 -6.73553981955615 LTS-022 chr6 106553504 112029290 5475787 * c(LOC100422737, LOC100996634, TRAF3IP2, SEC63, GTF3C6, SLC16A10, AIM1, CCDC162P, AK9, FOXO3, CDK19, LACE1, FYN, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, LINC00222, GSTM2P1, C6orf203, CDC40, SOBP, QRSL1, PDSS2, BEND3, REV3L, PRDM1, TRAF3IP2-AS1, MICAL1, SMPD2, NR2E1, METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.164862869239498 64 0.0983046757575328 0.941585572183775 4533 0.590839068502444 2 2 0 -6.87235914813017 LTS-022 chr6 112029291 134310874 22281584 * c(TRAPPC3L, LOC100287632, SMLR1, LINC01013, MIR5695, TRDN, SMPDL3A, TMEM200A, NUS1, SLC18B1, COL10A1, CLVS2, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, RNF217, NKAIN2, EPB41L2, EYA4, FABP7, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, FYN, TMEM244, FAM26E, MCM9, ASF1A, MOXD1, GJA1, LINC00326, LINC01268, FLJ34503, DCBLD1, LOC285762, NA NA NA NA NA NA NA NA NA LTS-022 DSE, HDAC2, TAAR6, HSF2, RSPH4A, C6orf58, ARG1, KPNA5, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, LAMA4, MARCKS, MAN1A1, FAM26F, RFPL4B, HDDC2, TUBE1, RWDD1, ENPP1, ENPP3, PLN, VNN3, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, SNORA33, TRMT11, ROS1, FAM229B, RPS12, LOC643623, CTAGE9, MIR548B, TCF21, TPD52L1, TSPYL1, TPI1P3, OR2A4, RNF217-AS1, FAM184A, RNF146, TAAR8, STX7, L3MBTL3, RSPO3, WISP3, VNN2, VNN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408) 0.130470338646564 157 0.0751672271444369 0.792029844865807 9432 0.5055491426197 2 2 0 -6.97390524722972 LTS-022 NA NA NA NA LTS-022 chr6 134310875 134311630 756 * SLC2A12 0.4 1 NA 0.973771453222291 15 0.222804484010619 2 2 0 -5.76458627784079 LTS-022 chr6 134311631 135606603 1294973 * c(MIR3662, HBS1L, SLC2A12, LINC01010, HMGA1P7, MYB, AHI1, SGK1, ALDH8A1) 0.168169068794801 4 0.129001291983194 0.804872462470809 715 0.661579322474308 2 2 0 -6.76526996715096 LTS-022 chr6 135606604 135606644 41 * AHI1 NA 0 NA 0.356 1 NA NA NA NA NA LTS-022 chr6 135606645 146112350 10505706 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, LOC100507557, MIR4465, CITED2, MTFR2, IL22RA2, ADAT2, LOC153910, ZC2HC1B, OLIG3, TXLNB, HEBP2, FUCA2, CCDC28A, PDE7B, PHACTR2-AS1, HIVEP2, SLC35D3, IFNGR1, ECT2L, MAP3K5, FLJ46906, NMBR, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, AHI1, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, PERP, LINC01625, TNFAIP3, UTRN, EPM2A, SF3B5, NA NA NA NA NA NA NA NA NA LTS-022 LTV1, REPS1, PEX3, STX11, MAP7, PHACTR2, BCLAF1) 0.224653737071518 56 0.103509506119693 0.553740287286823 4696 0.336198555242686 1 1 0 -6.75858574127159 LTS-022 NA NA NA NA LTS-022 chr6 146112351 146119219 6869 * LOC100507557 NA 0 NA 0.393 1 NA NA NA NA NA LTS-022 chr6 146119220 147886257 1767038 * c(LOC100507557, RAB32, STXBP5, SHPRH, GRM1, SAMD5, KATNBL1P6, STXBP5-AS1, ADGB, FBXO30) 0.22062903915702 15 0.0837810638907544 0.464469418953376 895 0.307777170108024 1 1 0 -6.99090816081429 LTS-022 chr6 147886258 153304228 5417971 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, RAET1L, ESR1, TAB2, SASH1, SYNE1, MTHFD1L, FBXO5, ZC3H12D, NUP43, RAET1G, SUMO4, SAMD5, IYD, PCMT1, RMND1, PLEKHG1, ZBTB2, RPS18P9, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, PPIL4, LATS1, AKAP12) 0.214998137541844 103 0.0691666626528959 0.594893729940463 3970 0.361765286291786 1 1 0 -6.94028904481063 LTS-022 chr6 153304229 153308452 4224 * c(FBXO5, MTRF1L) NA 0 NA 0.318 1 NA NA NA NA NA LTS-022 chr6 153308453 153311302 2850 * MTRF1L 0.056 1 NA 0.22464954425625 62 0.348907938957821 0 0 0 -5.76445220017625 LTS-022 chr6 153311303 153314084 2782 * MTRF1L NA 0 NA 0.815 1 NA NA NA NA NA LTS-022 chr6 153314085 167587631 14273547 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, MTRF1L, NA NA NA NA NA NA NA NA NA LTS-022 AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.219020038312606 110 0.086966253652755 0.582404795831599 6602 0.682120043415185 1 1 0 -6.82494999970036 LTS-022 NA NA NA NA LTS-022 chr6 167587632 167791618 203987 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.267644485895591 16 0.121885670473057 0.376278814052835 417 0.344330563821734 1 1 0 -6.96122103908009 LTS-022 chr6 167791619 167794423 2805 * TCP10 NA 0 NA 0.718 1 NA NA NA NA NA LTS-022 chr6 167794424 170062480 2268057 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.2012747692578 38 0.0876487274922458 0.684162761551596 1134 0.440251180869474 1 1 0 -7.11468079945628 LTS-022 chr6 170062481 170890384 827904 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.217117316827606 17 0.0639208494937294 0.534090765315403 671 0.488915371243787 1 1 0 -6.73416557894747 LTS-022 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.511974489637611 47 0.284624668054483 1 NA NA -5.76448932656598 LTS-022 chr7 193047 296739 103693 * FAM20C 0.259 1 NA 0.608658376420473 89 0.343503200752885 1 1 0 -5.77141197736343 LTS-022 chr7 296740 5541009 5244270 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ZNF890P, MIR589, MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, NA NA NA NA NA NA NA NA NA LTS-022 C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.198079029973811 148 0.0671296942107173 0.727742845686698 5146 0.441470977199745 2 2 0 -7.49803236680079 LTS-022 NA NA NA NA LTS-022 chr7 5541010 5760860 219851 * c(RNF216-IT1, RNF216, ACTB, FSCN1, FBXL18) 0.238 1 NA 0.715890882949483 233 0.379880231723557 2 2 0 -5.79031643204725 LTS-022 chr7 5760861 5925699 164839 * c(ZNF815P, RNF216, OCM) 0.39 1 NA 0.601129038834199 98 0.230971712191183 1 1 0 -5.78395953545743 LTS-022 chr7 5925700 5925706 7 * OCM NA 0 NA 0.249 1 NA NA NA NA NA LTS-022 chr7 5925707 6022570 96864 * c(RSPH10B, CCZ1, PMS2, OCM) 0.44999256056993 2 0.0374766594028871 0.329476096294492 151 0.290501882376791 0 0 0 -7.42724465573117 LTS-022 chr7 6022571 6026483 3913 * PMS2 NA 0 NA 0.571 1 NA NA NA NA NA LTS-022 chr7 6026484 6803668 777185 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.220756072924506 31 0.0764814124582758 0.645348332340904 1343 0.419906373256476 1 1 0 -6.81214786969859 LTS-022 chr7 6803669 6844723 41055 * c(CCZ1B, RSPH10B2) NA 0 NA 0.315231448622116 63 0.19501972933134 0 NA NA -5.8162100747065 LTS-022 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 0.892 1 NA NA NA NA NA LTS-022 chr7 6845571 17879484 11033914 * c(LOC100131257, ISPD-AS1, LRRC72, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, CCZ1B, THSD7A, SNX13, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, UMAD1, ISPD, SCIN, PHF14) 0.220290981934553 91 0.0820209255887315 0.515728102627515 3008 0.318620109918732 1 1 0 -6.89421185512376 LTS-022 chr7 17879485 17932932 53448 * SNX13 0.352 1 NA 0.608053817839112 125 0.299601068088884 1 1 0 -5.76907475204308 LTS-022 chr7 17932933 18707281 774349 * c(PRPS1L1, SNX13, HDAC9) 0.478 1 NA 0.647010388940114 172 0.502095743450306 1 1 0 -5.82122150853599 LTS-022 chr7 18707282 23353318 4646037 * c(MIR3146, LOC100506178, KLHL7-AS1, MACC1-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, TWISTNB, SP8, FERD3L, RPL23P8, TMEM196, STEAP1B, ABCB5, MACC1, IL6, ITGB8, TOMM7, CDCA7L, KLHL7, SP4, SNORD93, TWIST1, FAM126A, DNAH11, HDAC9, RAPGEF5) 0.417201478389097 68 0.0950001559538482 0.785181364397977 2546 0.483970947114901 2 1 1 -6.80541759916454 LTS-022 chr7 23353319 23357173 3855 * IGF2BP3 NA 0 NA 1.845 1 NA NA NA NA NA LTS-022 chr7 23357174 25264400 1907227 * c(IGF2BP3, CLK2P1, C7orf31, DFNA5, RPS2P32, OSBPL3, TRA2A, FAM221A, NPY, MPP6, CYCS, STK31, NPVF, CCDC126) 0.381527022741556 27 0.129302666202904 0.973142300641362 950 0.714758567179232 2 1 1 -6.80370369344647 LTS-022 chr7 25264401 26412877 1148477 * c(RNU6-16P, CBX3, SNX10, HNRNPA2B1, MIR148A, NPVF, NFE2L3) 0.465623317854716 5 0.0239060661757639 0.595801295123498 259 0.405882114673635 2 1 1 -9.43569272440907 LTS-022 chr7 26412878 31591626 5178749 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, ADCYAP1R1, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, CCDC129, ZNRF2, GARS, GHRHR, C7orf71, SNX10, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, AQP1, LOC401320, LOC441204, DPY19L2P3, MIR196B, CPVL, FKBP14, NEUROD6, NA NA NA NA NA NA NA NA NA LTS-022 WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, SCRN1, KIAA0087, TRIL) 0.432695094798802 100 0.0719898730251819 0.944319164267972 3642 0.524526106588142 2 1 1 -6.92362214952706 LTS-022 NA NA NA NA LTS-022 chr7 31591627 31592531 905 * CCDC129 NA 0 NA 0.48 1 NA NA NA NA NA LTS-022 chr7 31592532 39874090 8281559 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, PPP1R17, POU6F2, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7 NA NA NA NA NA NA NA NA NA LTS-022 ) 0.401470309478939 130 0.129606216354886 0.834760407332432 3865 0.481712717238088 2 1 1 -6.74026285207746 LTS-022 NA NA NA NA LTS-022 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.255 1 NA NA NA NA NA LTS-022 chr7 39892331 39990117 97787 * CDK13 NA 0 NA 0.382747408523035 40 0.245368690404398 1 NA NA -5.8805436650103 LTS-022 chr7 39990118 48260940 8270823 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, C7orf57, MPLKIP, ABCA13, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, SUN3, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, NA NA NA NA NA NA NA NA NA LTS-022 UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.424495049368939 144 0.0963105640491984 0.940393546599096 5406 0.578585891724632 2 1 1 -6.90372234192632 LTS-022 NA NA NA NA LTS-022 chr7 48260941 50515035 2254095 * c(C7orf72, IKZF1, ZPBP, ABCA13, CDC14C, VWC2, FIGNL1) 0.38647408026599 27 0.133563209957424 0.704361416601678 962 0.39382592433411 2 1 1 -7.03532035054903 LTS-022 chr7 50515036 50530852 15817 * c(DDC, FIGNL1) NA 0 NA 3.294 1 NA NA NA NA NA LTS-022 chr7 50530853 53930236 3399384 * c(DDC-AS1, DDC, COBL, POM121L12, GRB10, LINC01446) 0.431857352377784 19 0.108140962804375 0.931855745883587 527 0.540278922164386 2 1 1 -6.82067567068703 LTS-022 chr7 53930237 53934389 4153 * character(0) 0.399419521120817 3 0.0190087699058443 0.421510433703528 70 0.26228067086722 5 3 2 -6.85836410259055 LTS-022 chr7 53934390 53934397 8 * character(0) NA 0 NA 0.672 1 NA NA NA NA NA LTS-022 chr7 53934398 55538381 1603984 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, LANCL2, VOPP1) 0.377888727302252 20 0.16525836231728 0.846457808539725 616 0.433231983632158 2 1 1 -6.75504238659199 LTS-022 chr7 55538382 55539987 1606 * VOPP1 0.383 1 NA 0.349338826728503 45 0.184339437676337 0 0 0 -5.76864639101928 LTS-022 chr7 55539988 57532487 1992500 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.391061248151451 25 0.0787731341681075 0.975654902994428 825 0.760657404064243 2 1 1 -6.80678615792725 LTS-022 chr7 57532488 57533232 745 * ZNF716 NA 0 NA 2.47817724046461 15 3.02152423376648 7 NA NA -5.76441022682754 LTS-022 chr7 62758725 63354921 596197 * ZNF733P 0 1 NA 2.11709268886856 25 1.11932592364035 6 6 0 -5.76456861400138 LTS-022 chr7 63354922 65154711 1799790 * c(LOC100128885, LINC01005, ZNF273, ZNF92, ZNF679, ERV3-1, ZNF680, LOC441242, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, INTS4P2, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.45004789433275 11 0.0548503749883593 0.726322133677771 683 0.568004245234365 2 1 1 -7.12141565103621 LTS-022 chr7 65154712 66452701 1297990 * c(VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, TMEM248, CCT6P1, INTS4P2, SNORA22, GTF2IRD1P1, TPST1) 0.220890330550551 4 0.269772126061978 1.06738288973503 706 0.556994194984958 3 3 0 -6.85949403474472 LTS-022 chr7 66452702 66452771 70 * SBDS NA 0 NA 0.42 1 NA NA NA NA NA LTS-022 chr7 66452772 66786524 333753 * c(MIR4650-2, SBDS, PMS2P4, TYW1, STAG3L4) NA 0 NA 0.626177901289066 199 0.418552714849471 1 NA NA -5.78791564363231 LTS-022 chr7 69063868 71248232 2184365 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.332744797054445 7 0.156842656977045 1.43456811500761 400 0.927693549750872 4 3 1 -6.77655049081073 LTS-022 chr7 71248233 72850369 1602137 * c(MIR4650-1, TRIM50, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, FZD9, CALN1, FKBP6, POM121) 0.289059313924017 7 0.169086199487548 0.793034241311773 689 0.701699334950228 2 1 1 -7.03200760730677 LTS-022 chr7 72850370 74210975 1360606 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, GTF2IRD2, DNAJC30, BAZ1B, BCL7B, GTF2IRD1) 0.375547731800476 17 0.179521606925019 1.13061686769764 1721 0.651441875549594 3 2 1 -6.73729884783378 LTS-022 chr7 74210976 74211405 430 * GTF2IRD2 NA 0 NA 0.356 1 NA NA NA NA NA LTS-022 chr7 74211406 75048064 836659 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.420271444471261 4 0.0115181016954473 0.572472684643887 235 0.543268215350193 2 1 1 -7.45965683761174 LTS-022 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.928 1 NA NA NA NA NA LTS-022 chr7 75048588 75172324 123737 * c(POM121C, HIP1, SPDYE5, PMS2P3) 0.38069714588662 8 0.171185780450864 1.03247105951123 184 0.772734227273671 3 2 1 -6.74190160184807 LTS-022 chr7 75172325 75241024 68700 * HIP1 0.491 1 NA 1.28086747465276 129 0.449698725187294 3 3 0 -5.76668079841139 LTS-022 chr7 75241025 76713277 1472253 * c(PMS2P9, LOC100133091, MIR4651, CCL26, DTX2, SSC4D, SRRM3, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, STYXL1, POR, RHBDD2, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A) 0.435795031496452 17 0.091566393462693 1.05648684586121 963 0.606505565474931 2 1 1 -6.89625779953593 LTS-022 chr7 76713278 95739431 19026154 * c(MIR548M, APTR, MAGI2-AS3, MIR4652, MIR548AU, MAGI2-AS2, LOC101409256, AKAP9, CDK6, BET1, SEMA3A, SEMA3C, FGL2, DBF4, TP53TG1, COL1A2, RUNDC3B, CYP51A1, DYNC1I1, SAMD9L, C7orf62, ZNF804B, RSBN1L, KIAA1324L, SEMA3D, PEG10, HEPACAM2, FAM133B, STEAP2, STEAP1, PCLO, GNAI1, GNG11, GNGT1, GRM3, HGF, GNAT3, RPL13AP17, LRRD1, DPY19L2P4, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, GSAP, PON1, PON2, PON3, NA NA NA NA NA NA NA NA NA LTS-022 ANKIB1, CROT, SAMD9, PPP1R9A, VPS50, SLC25A40, PHTF2, MIR489, CCDC146, GATAD1, PTPN12, CASD1, SRI, MIR653, CACNA2D1, TMEM243, STEAP4, MTERF1, TFPI2, CFAP69, CALCR, FZD1, RBM48, NA, TMEM60, GTPBP10, KRIT1, SGCE, CLDN12, CD36, SEMA3E, MAGI2, DMTF1) 0.417649510295371 199 0.0851396142880666 0.763877718984009 9421 0.453626065826373 2 1 1 -7.2837800708195 LTS-022 NA NA NA NA LTS-022 chr7 95739432 95926165 186734 * c(SLC25A13, MIR591) 0.345 1 NA 1.07272560474042 113 0.865644269103719 3 3 0 -5.76518014046544 LTS-022 chr7 95926166 97823859 1897694 * c(LOC100506136, SLC25A13, DLX5, DLX6, LMTK2, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, SDHAF3, TAC1, SHFM1) 0.281343434241119 5 0.235821542697015 0.804160413087558 510 0.494638661278439 2 1 1 -6.91821514412497 LTS-022 chr7 97823860 97921533 97674 * c(BHLHA15, LMTK2, BRI3, TECPR1, BAIAP2L1) 0.194855855561634 4 0.2080150234959 1.1818923753746 332 0.575667386806156 6 5 1 -6.78939811819358 LTS-022 chr7 97921534 97921834 301 * c(BRI3, BAIAP2L1) 0.487 1 NA 1.06342638144287 5 0.459550650092022 3 3 0 -5.76441565438263 LTS-022 chr7 97921835 99055790 1133956 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, TMEM130, BRI3, PTCD1, KPNA7, NPTX2, BAIAP2L1, SMURF1, TRRAP, MYH16, BUD31, ATP5J2) 0.4148471100382 23 0.105011254808062 1.1635848776581 1371 0.669095052228304 4 2 2 -6.8107001882255 LTS-022 chr7 99055791 99565768 509978 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.431359888427776 30 0.0915353332947409 0.782798287796781 1109 0.421585790517711 2 1 1 -6.77758520128232 LTS-022 chr7 99565769 99565859 91 * AZGP1 NA 0 NA 0.88 1 NA NA NA NA NA LTS-022 chr7 99565860 100016849 450990 * c(MIR4658, STAG3, COPS6, GPC2, CNPY4, MBLAC1, PILRB, PILRA, GATS, LAMTOR4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PMS2P1, ZCWPW1, C7orf43, AZGP1, AZGP1P1, TAF6, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, AP4M1) 0.432464072618728 37 0.0852484973844484 1.00059479366186 1365 0.538014753162033 2 1 1 -6.80158326988478 LTS-022 chr7 100016850 100033470 16621 * c(PPP1R35, ZCWPW1, MEPCE) 0.444133726727604 8 0.0442226509511004 0.622408330576494 120 0.29345553540614 2 1 1 -7.08936652196724 LTS-022 chr7 100033471 100612952 579482 * c(PCOLCE-AS1, SAP25, MUC12, POP7, EPHB4, EPO, PPP1R35, NYAP1, FBXO24, GNB2, AGFG2, C7orf61, UFSP1, LRCH4, ACHE, PCOLCE, ACTL6B, SRRT, SLC12A9, MOSPD3, GIGYF1, TFR2, TRIP6, ZAN, TSC22D4) 0.386799543007239 141 0.0795490825525625 1.12852557520841 2155 0.685908606980986 3 2 1 -6.79242735129474 LTS-022 chr7 100612953 100612961 9 * MUC12 0.316 1 NA 4.552 1 NA NA NA NA NA LTS-022 chr7 100612962 100674948 61987 * c(MUC12, MUC17) 0.295576051290517 16 0.0959534609415766 1.02582262132652 152 0.992188502430448 4 3 1 -6.73934107320049 LTS-022 chr7 100674949 100680120 5172 * MUC17 0.275050765219486 22 0.120644266175558 0.5659026806832 83 0.472869619503793 4 3 1 -6.75529917880748 LTS-022 chr7 100680121 100680370 250 * MUC17 0.474 1 NA 0.946166801742337 9 1.14615692400493 2 2 0 -5.76441151520225 LTS-022 chr7 100680371 100687052 6682 * MUC17 0.465308869434848 4 0.00962635271879576 0.441151414800241 108 0.213552106638903 0 0 0 -12.8701060024961 LTS-022 chr7 100687053 102279673 1592621 * c(RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, POLR2J2, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.423758576325651 42 0.139047322720955 1.15040840639636 1827 0.705464971271558 4 2 2 -6.84493272732306 LTS-022 chr7 102279674 102318880 39207 * c(SPDYE2B, RASA4, POLR2J2) NA 0 NA 0.36 1 NA NA NA NA NA LTS-022 chr7 102318881 105890642 3571762 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, NAMPT, RASA4, LRRC17, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, DNAJC2, DPY19L2P2, SLC26A5, LHFPL3, ORC5, PUS7, KMT2E, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, ARMC10, PMPCB) 0.433302343724516 26 0.0659587400168877 0.81142013491514 2432 0.485355085602843 2 1 1 -6.82668515974719 LTS-022 chr7 105890643 105909130 18488 * NAMPT NA 0 NA 0.354400885917289 59 0.226829542047611 0 NA NA -5.79890390068222 LTS-022 chr7 105909131 105909667 537 * NAMPT NA 0 NA 0.927 1 NA NA NA NA NA LTS-022 chr7 105909668 112099042 6189375 * c(NAMPT, COG5, DUS4L, ZNF277, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LAMB4, HBP1, GPR22, SLC26A4-AS1, IFRD1, LAMB1, DNAJB9, EIF3IP1, NRCAM, PNPLA8, SLC26A4, PIK3CG, LRRN3, PRKAR2B, BCAP29, CBLL1, IMMP2L, DOCK4) 0.42408640751584 26 0.0963136542760163 0.791993512603168 2809 0.48524189720948 2 1 1 -6.81798520183777 LTS-022 chr7 112099043 112101925 2883 * IFRD1 NA 0 NA 0.504 1 NA NA NA NA NA LTS-022 chr7 112101926 115897693 3795768 * c(MIR3666, BMT2, TFEC, TES, LSMEM1, MDFIC, IFRD1, LINC00998, GPR85, PPP1R3A, TMEM168, FOXP2) 0.437830052498923 24 0.0452973269198852 0.630907368150023 1118 0.397245779817223 2 1 1 -8.00714766448928 LTS-022 chr7 115897694 120988959 5091266 * c(FAM3C, CFTR, ASZ1, TSPAN12, TES, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.395605469656979 37 0.131227715110845 0.793525932929285 1990 0.488227443624558 2 1 1 -6.79474526205926 LTS-022 chr7 120988960 120988965 6 * FAM3C NA 0 NA 0.408 1 NA NA NA NA NA LTS-022 chr7 120988966 120990550 1585 * FAM3C 0.267 1 NA 0.292448123392691 40 0.14984538826609 0 0 0 -5.76625867459694 LTS-022 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.462 1 NA NA NA NA NA LTS-022 chr7 120990582 127220768 6230187 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, MIR592, TMEM229A, GCC1, WASL, CADPS2) 0.415098441953904 24 0.109412661217898 0.74847684005691 1920 0.410526856029219 2 1 1 -7.05855311041831 LTS-022 chr7 127220769 141137614 13916846 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, MGC27345, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, MKRN1, UBN2, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, TPI1P2, FLJ40288, HIPK2, WDR91, HILPDA, FSCN3, MESTIT1, TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, LOC349160, NA NA NA NA NA NA NA NA NA LTS-022 IMPDH1, IRF5, KCP, LINC-PINT, ARF5, FAM180A, LEP, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NDUFB2, CNOT4, NRF1, ATP6V0A4, PAX4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, CHCHD3, RBM28, TMEM140, METTL2B, ZC3HAV1, AKR1B10, MIR490, STRIP2, PTN, KIAA1549, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, PARP12, CREB3L2, SMO, BPGM, AKR1D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 BRAF, TBXAS1, MIR593, UBE2H, LUZP6, C7orf49, GCC1, TTC26, CALD1, KDM7A, CALU, SLC37A3, FAM71F1, SLC35B4, TMEM209, TRIM24, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, CPA5, CEP41) 0.397411224382509 227 0.136534874013057 0.955887453983369 10634 0.559192390067161 2 1 1 -7.1018851704231 LTS-022 NA NA NA NA LTS-022 chr7 141137615 141170316 32702 * TMEM178B NA 0 NA 0.681 1 NA NA NA NA NA LTS-022 chr7 141170317 141952110 781794 * c(MOXD2P, TMEM178B, OR9A4, PRSS37, PRSS58, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, MGAM, MGAM2) 0.418050533861833 14 0.148645015588619 0.733377954596909 1356 0.369232590013368 2 1 1 -6.80604307942446 LTS-022 chr7 141952111 142032571 80461 * c(PRSS58, NA) 0.214 1 NA 0.867855392762737 109 0.587839169525712 2 2 0 -5.76448916390494 LTS-022 chr7 142032572 143295577 1263006 * c(MTRNR2L6, CLCN1, OR9A2, C7orf34, TMEM139, PRSS3P2, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, PRSS1, ZYX, CASP2, OR6W1P, FAM131B) 0.342779919749984 86 0.116627178516887 0.829817632947942 1821 0.660344235207855 2 1 1 -6.92453201694065 LTS-022 chr7 143295578 143321183 25606 * TCAF2 NA 0 NA 0.159369962707136 63 0.0939451856172824 0 NA NA -6.0282602544159 LTS-022 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.044 1 NA NA NA NA NA LTS-022 chr7 143400289 144074420 674132 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A7, OR2A2, ARHGEF35, ARHGEF34P, ARHGEF5, TCAF1) 0.116155943828142 2 0.147785317267988 0.497103420342889 465 0.439223169896209 1 1 0 -7.02734674364883 LTS-022 chr7 144074421 144075785 1365 * ARHGEF5 NA 0 NA 0.909 1 NA NA NA NA NA LTS-022 chr7 144075786 148483760 4407975 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, CNTNAP2, TPK1, ARHGEF5, CUL1) 0.301228519200088 25 0.15285314302733 0.766848844149846 630 0.553648889225328 2 1 1 -7.10537468280858 LTS-022 chr7 148483761 148506064 22304 * c(EZH2, CUL1) 0.471 1 NA 0.758715648642842 79 0.907941469001581 2 2 0 -5.76460874545327 LTS-022 chr7 148506065 149745351 1239287 * c(ZNF783, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, EZH2, SSPO, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ZNF212, ZNF767P, ZNF282, KRBA1, PDIA4) 0.374832215399845 42 0.106335522388894 0.84238072846063 2102 0.454058521122871 2 1 1 -6.79661007353317 LTS-022 chr7 149745352 149941029 195678 * character(0) NA 0 NA 0.435 1 NA NA NA NA NA LTS-022 chr7 149941030 149945037 4008 * ACTR3C NA 0 NA 0.329704150336363 87 0.221174544413452 0 NA NA -5.76972262067503 LTS-022 chr7 149945038 149945050 13 * ACTR3C NA 0 NA 0.629 1 NA NA NA NA NA LTS-022 chr7 149945051 150554919 609869 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.404041075016444 37 0.0963877149412289 0.681606416801611 917 0.395282335151371 2 1 1 -6.84409586367403 LTS-022 chr7 150554920 153418603 2863684 * c(LINC01003, WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, FABP5P3, AOC1, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, ACTR3B, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, XRCC2, MIR671, TMUB1, ASIC3) 0.394673083827899 52 0.0856766255340156 0.84867978521794 2843 0.470871068428845 2 1 1 -6.75119195522062 LTS-022 chr7 153418604 153418616 13 * character(0) NA 0 NA 0.487 1 NA NA NA NA NA LTS-022 chr7 153418617 153584403 165787 * character(0) NA 0 NA 0.381024824724113 72 0.184407410681461 1 NA NA -6.10857133477312 LTS-022 chr7 153584404 158738797 5154394 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, UBE3C) 0.386190257226245 93 0.101963755947306 0.785935692847888 3031 0.462557959250285 2 1 1 -6.84547565642621 LTS-022 chr7 158738798 159025951 287154 * c(LINC00689, WDR60, VIPR2) NA 0 NA 0.710157502235969 151 0.359893678928167 2 NA NA -5.80568295246172 LTS-022 chr8 182757 280241 97485 * ZNF596 0.22 1 NA 0.449945331271553 89 0.199261385098618 1 1 0 -5.81539310104705 LTS-022 chr8 280242 7305470 7025229 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.231367770852526 98 0.0932572331219422 0.613048223210262 2284 0.32812023614067 1 1 0 -7.27966757034172 LTS-022 chr8 7305471 7308043 2573 * character(0) NA 0 NA 0.019 1 NA NA NA NA NA LTS-022 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.205 1 NA 0.12241454270996 96 0.104640604644425 0 0 0 -10.3131242903773 LTS-022 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.191 1 NA NA NA NA NA LTS-022 chr8 8175295 13134119 4958825 * c(FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LINC00681, DLC1, CLDN23, CTSB, LOC157273, SGK223, LINC00599, TDH, PRSS55, C8orf74, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, XKR6, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MIR124-1, MSRA, PINX1, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, SOX7, FAM167A, NA NA NA NA NA NA NA NA NA LTS-022 SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ERI1, LONRF1, MFHAS1, RP1L1) 0.189659915366115 63 0.101138437870828 0.634584071994008 3076 0.606299467827977 1 1 0 -6.97701163118863 LTS-022 NA NA NA NA LTS-022 chr8 13134120 13162049 27930 * DLC1 NA 0 NA 0.5 1 NA NA NA NA NA LTS-022 chr8 13162050 19819781 6657732 * c(NAT2, LOC100128993, DLC1, VPS37A, SGCZ, C8orf48, FGL1, PSD3, FGF20, MICU3, CNOT7, LPL, ASAH1, MSR1, MIR383, PCM1, ZDHHC2, PDGFRL, INTS10, CSGALNACT1, MTUS1, SH2D4A, SLC7A2, TUSC3, NAT1, MTMR7) 0.227212556047686 64 0.0865766688736288 0.54369472577977 2485 0.315178527896447 1 1 0 -6.73838826964884 LTS-022 chr8 19819782 19822680 2899 * LPL NA 0 NA 1.187 1 NA NA NA NA NA LTS-022 chr8 19822681 23709036 3886356 * c(LOC100507156, LZTS1-AS1, SORBS3, NPM2, LZTS1, NKX2-6, PEBP4, EGR3, R3HCC1, LGI3, DMTN, XPO7, RHOBTB2, SLC39A14, LOC254896, GFRA2, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, NKX3-1, SLC25A37, ATP6V1B2, C8orf58, PIWIL2, PPP3CC, HR, BIN3, CCAR2, PDLIM2, SFTPC, FAM160B2, BMP1, SLC18A1, POLR3D, STC1, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, NA NA NA NA NA NA NA NA NA LTS-022 PHYHIP) 0.216801803942469 104 0.0634687380780398 0.633500343447554 4065 0.634055458908597 1 1 0 -6.8706310968317 LTS-022 NA NA NA NA LTS-022 chr8 23709037 23709688 652 * STC1 NA 0 NA 0.479 1 NA NA NA NA NA LTS-022 chr8 23709689 27101390 3391702 * c(PNMA2, ADAM28, ADRA1A, CDCA2, DPYSL2, ADAMDEC1, GNRH1, NEFM, NEFL, KCTD9, PPP2R2A, EBF2, BNIP3L, STC1, DOCK5, STMN4, ADAM7) 0.212790581390895 39 0.0862797759042898 0.539952212119574 2023 0.346285346614931 1 1 0 -6.73669020874711 LTS-022 chr8 27101391 27142391 41001 * STMN4 NA 0 NA 1.033 1 NA NA NA NA NA LTS-022 chr8 27142392 27468862 326471 * c(CHRNA2, CLU, EPHX2, PTK2B, TRIM35) 0.158996537046619 17 0.071684972582248 0.81469663599101 589 0.401124266516453 2 2 0 -6.7747090566981 LTS-022 chr8 27468863 27529926 61064 * c(CLU, SCARA3) 0.104 1 NA 0.89913940135699 83 0.255979877946697 2 2 0 -5.76636888429755 LTS-022 chr8 27529927 27767305 237379 * c(MIR4287, MIR3622A, MIR3622B, ESCO2, SCARA5, SCARA3, CCDC25, PBK) 0.080496611948178 15 0.0701374840343355 0.720808311091894 367 0.582191094151345 3 3 0 -6.88747611626264 LTS-022 chr8 27767306 27879537 112232 * c(SCARA5, NUGGC) 0.436 1 NA 1.24034451118427 34 0.454534852639283 3 3 0 -5.76616651450914 LTS-022 chr8 27879538 38964688 11085151 * c(RBPMS-AS1, MIR3148, MIR4288, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, FBXO16, KCNU1, DUSP4, EIF4EBP1, HTRA4, EXTL3, FGFR1, DDHD2, KIF13B, LEPROTL1, ADGRA2, LSM1, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, NUGGC, C8orf86, SARAF, PNOC, WHSC1L1, ELP3, PPP2CB, BRF2, INTS9, ZNF395, TEX15, PLEKHA2, LINC00589, MBOAT4, STAR, TACC1, LOC728024, WRN, DUSP26, HMBOX1, NA NA NA NA NA NA NA NA NA LTS-022 FZD3, RNF122, UBXN8, ZNF703, TTI2, RAB11FIP1, TM2D2, PLPP5, MAK16, FUT10, ADAM9, ASH2L, BAG4) 0.41156438142751 77 0.11990462147128 0.890597827849854 6317 0.511347612404446 2 1 1 -6.79525494792023 LTS-022 NA NA NA NA LTS-022 chr8 38964689 38964946 258 * character(0) NA 0 NA 1.525 1 NA NA NA NA NA LTS-022 chr8 38964947 43047593 4082647 * c(LOC100130964, MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, ADAM3A, IDO2, ADAM32, FNTA, ADAM2, ADAM5, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.400722161183783 35 0.148573904310336 1.03397978978231 3039 0.655384242318961 3 2 1 -6.84056532689166 LTS-022 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 1.08794456170958 147 0.420682327453643 3 NA NA -5.76626456162864 LTS-022 chr8 47752736 47759712 6977 * LINC00293 0.472 1 NA 0.434535746813221 23 0.203031958776408 1 1 0 -5.76939557469915 LTS-022 chr8 47759713 53447317 5687605 * c(LOC100287846, CEBPD, PCMTD1, PXDNL, SPIDR, FAM150A, MCM4, C8orf22, LINC00293, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1, ST18) 0.357537569989323 24 0.127002046942308 0.861009572649073 1767 0.506072867116446 2 1 1 -6.83553435288116 LTS-022 chr8 53447318 53450951 3634 * FAM150A NA 0 NA 1.049 1 NA NA NA NA NA LTS-022 chr8 53450952 75227889 21776938 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, SBF1P1, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, NCOA2, ARFGEF1, COPS5, XKR4, C8orf34, TMEM68, ADHFE1, UBXN2B, CRH, RDH10, MCMDC2, CLVS1, SBSPON, CYP7A1, SDR16C5, EYA1, RRS1, SULF1, TRAM1, LY96, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, STAU2, BHLHE22, NPBWR1, LOC286177, NKAIN3, NA NA NA NA NA NA NA NA NA LTS-022 LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPL15, FAM150A, XKR9, LOC392232, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, OPRK1, LACTB2, PDE7A, ATP6V1H, PENK, PLAG1, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, CHD7, C8orf44, JPH1, CPA6, RAB2A, RP1, RPL7, RPS20, SDCBP, PRDM14, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TCEB1, TERF1, TTPA, CA8, CHCHD7, CSPP1, VCPIP1, PREX2, SLCO5A1, NSMAF, TRIM55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 DNAJC5B, RGS20, GGH, TRPA1, FAM110B, MSC, KCNB2, CYP7B1, MTFR1, TGS1, TOX, RB1CC1) 0.343747336106073 160 0.111343396065884 1.07465685813399 9038 0.636873344031087 3 2 1 -6.90231754323217 LTS-022 NA NA NA NA LTS-022 chr8 75227890 75233170 5281 * JPH1 NA 0 NA 0.697 1 NA NA NA NA NA LTS-022 chr8 75233171 76478622 1245452 * c(MIR2052, MIR5681A, MIR5681B, HNF4G, MIR2052HG, PI15, GDAP1, JPH1, CRISPLD1) 0.279851122378859 21 0.167242225244589 0.871021059893293 508 0.483548037699706 2 1 1 -7.07640672787775 LTS-022 chr8 76478623 77892834 1414212 * c(ZFHX4-AS1, HNF4G, PEX2, ZFHX4) 0.402 1 NA 0.901948529186207 345 1.50697531739227 2 2 0 -5.76586076208907 LTS-022 chr8 77892835 92968803 15075969 * c(C8orf88, LRRC69, REXO1L2P, MIR4661, MIR5708, LINC00534, LOC101241902, WWP1, STMN2, SLC26A7, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf59, MMP16, NBN, ZC2HC1A, RMDN1, OTUD6B, PMP2, CNGB3, TMEM55A, PKIA, PAG1, PEX2, ZNF704, SNX16, NECAB1, FABP9, FABP12, ZBTB10, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, NA NA NA NA NA NA NA NA NA LTS-022 LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, CHMP4C) 0.415160188725444 93 0.081412445046864 0.822559810658794 4612 0.460406392496078 2 1 1 -6.77353909562904 LTS-022 NA NA NA NA LTS-022 chr8 92968804 92968807 4 * RUNX1T1 NA 0 NA 1.158 1 NA NA NA NA NA LTS-022 chr8 92968808 92983023 14216 * RUNX1T1 0.365 1 NA 1.61500869141053 92 0.701466464308487 5 5 0 -5.76454288051098 LTS-022 chr8 92983024 92988043 5020 * RUNX1T1 NA 0 NA 1.124 1 NA NA NA NA NA LTS-022 chr8 92988044 114628160 21640117 * c(MIR875, LOC100288748, MIR2053, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR378D2, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, CSMD3, CTHRC1, OSR2, COX6C, FAM92A1, NDUFAF6, ABRA, BAALC-AS2, ANKRD46, C8orf37, VPS13B, TMEM74, SNX31, DPYS, ERICH5, ZFPM2, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, KCNV1, ANGPT1, TRIQK, DPY19L4, FBXO43, LRP12, RSPO2, EIF3E, NA NA NA NA NA NA NA NA NA LTS-022 KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, FLJ42969, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, PDP1, ESRP1, OXR1, LAPTM4B, RBM12B-AS1, SYBU, INTS8, ENY2, RPL30, LINC01298, SDC2, LINC00535, SPAG1, STK3, MIR599, KLF10, TRHR, UQCRB, YWHAZ, PLEKHF2, NIPAL2, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, NUDCD1, TSPYL5, RUNX1T1, TMEM67, CCNE2, EBAG9, MTDH, PKHD1L1, TP53INP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 EMC2, RIMS2, PTDSS1) 0.408903395399217 184 0.0910523503272639 0.911243276547077 9309 0.730490104995239 2 1 1 -6.85854338763213 LTS-022 NA NA NA NA LTS-022 chr8 114628161 114628203 43 * character(0) NA 0 NA 1.469 1 NA NA NA NA NA LTS-022 chr8 114628204 117656871 3028668 * c(LINC00536, TRPS1) 0.375854721782127 3 0.085541412972509 1.44175030557219 291 0.739729598050543 4 2 2 -6.82535330547139 LTS-022 chr8 117656872 117783975 127104 * c(UTP23, EIF3H) 0.262 1 NA 1.16401099677643 83 0.660376861701752 3 3 0 -5.7644272792454 LTS-022 chr8 117783976 144940226 27156251 * c(MIR937, FAM83H-AS1, CDC42P3, LINC00861, CCDC166, FAM83A-AS1, LOC100133669, LOC100288181, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MIR3610, ASAP1-IT2, ZHX1-C8orf76, MIR4663, MIR4472-1, MIR4664, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, COLEC10, KHDRBS3, PTP4A3, RNF139, ZHX1, ADCY8, MAL2, RHPN1, FBXO32, TOP1MT, ZNF572, LYPD2, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, CYP11B1, CYP11B2, SLC30A8, COL22A1, EEF1D, NA NA NA NA NA NA NA NA NA LTS-022 TSNARE1, EXT1, MAPK15, PUF60, ZHX2, DENND3, ZC3H3, EFR3A, ARC, SCRIB, LRRC6, MTBP, AGO2, GLI4, GML, GPR20, NSMCE2, ZNF707, BREA2, FAM83H, LINC01591, C8orf31, ZFP41, MRPL13, ATAD2, ASAP1-IT1, HAS2, ANXA13, GPIHBP1, KLHL38, NRBP2, KCNQ3, MROH5, MAFA, SAMD12, LY6E, LY6H, MIR30B, MIR30D, FER1L6-AS1, AARD, MYC, NDUFB9, NOV, TNFRSF11B, ASAP1, FAM135B, PHF20L1, KCNK9, THEM6, FAM49B, ENPP2, CHRAC1, POU5F1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 LY6K, TRMT12, WDYHV1, SAMD12-AS1, GSDMC, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, PVT1, RAD21, ZFAT-AS1, HAS2-AS1, LINC00051, MROH6, RAD21-AS1, DEPTOR, ST3GAL1, SLA, PYCRL, FER1L6, LYNX1, SNTB1, SQLE, TAF2, TG, TSTA3, CASC8, LINC00977, OC90, LINC01300, COL14A1, RHPN1-AS1, DSCC1, DERL1, GSDMD, ZNF696, PSCA, EPPK1, TRAPPC9, TATDN1, UTP23, C8orf76, TIGD5, FAM83A, LY6D, JRK, WISP1, MED30, NAPRT, TBC1D31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 HPYR1, MTSS1, ZNF623, KIAA0196) 0.266556605943971 358 0.082832551861973 1.55580559027765 12502 1.51711065100751 4 3 1 -6.81284326894833 LTS-022 NA NA NA NA LTS-022 chr8 144940227 144940475 249 * EPPK1 NA 0 NA 1.069 1 NA NA NA NA NA LTS-022 chr8 144940476 144995822 55347 * c(PLEC, EPPK1) 0.319074651700123 9 0.0398246155034798 1.06630584726163 293 0.406461534964013 7 5 2 -6.9179337912554 LTS-022 chr8 144995823 146230890 1235068 * c(MIR939, MIR1234, MFSD3, CYC1, ADCK5, BOP1, FBXL6, OPLAH, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, GRINA, CPSF1, HSF1, ZNF517, WDR97, TMEM249, SPATC1, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, SCX, MIR661, MROH1, ZNF7, ZNF16, SLC52A2, ARHGAP39, ZNF34, SHARPIN, SCRT1, MAF1, PARP10, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.302557965533028 83 0.0769467856159852 1.42215638593787 3829 0.738585770522837 4 3 1 -6.74845417306192 LTS-022 chr8 146230891 146280905 50015 * c(ZNF252P-AS1, C8orf33) NA 0 NA 1.20830555927174 63 0.432019039613809 3 NA NA -5.76476904979482 LTS-022 chr9 14732 215296 200565 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0.306 1 NA 0.942525146660061 59 0.875729380230663 2 2 0 -5.76618342699535 LTS-022 chr9 215297 14082138 13866842 * c(LINC00583, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, LURAP1L, CD274, INSL4, JAK2, VLDLR-AS1, LINC01235, PLPP6, MIR101-2, NFIB, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, TYRP1, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, PUM3) 0.313149295581439 77 0.0842970348758396 1.13430450471275 4675 0.653061863001893 3 2 1 -6.93081981394439 LTS-022 chr9 14082139 14088071 5933 * NFIB 0.309 1 NA 2.07447248091686 130 1.2339836542332 6 6 0 -5.76441015893621 LTS-022 chr9 14088072 14088189 118 * NFIB NA 0 NA 1.328 1 NA NA NA NA NA LTS-022 chr9 14088190 16870775 2782586 * c(C9orf92, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, NFIB, BNC2, SNAPC3, CER1) 0.321079530425455 33 0.11015101548384 1.19243147310227 1342 0.686284962472989 3 2 1 -6.81769941062319 LTS-022 chr9 16870776 17134914 264139 * BNC2 NA 0 NA 0.775 1 NA NA NA NA NA LTS-022 chr9 17134915 19033257 1898343 * c(MIR3152, SAXO1, CNTLN, SH3GL2, ADAMTSL1) 0.398356610214636 22 0.112728046883252 0.966539258677185 653 0.429885355779067 2 1 1 -6.84368757673364 LTS-022 chr9 19033258 19049364 16107 * character(0) NA 0 NA 0.466 1 NA NA NA NA NA LTS-022 chr9 19049365 19056488 7124 * c(RRAGA, HAUS6) 0.466 1 NA 0.512156430459403 113 0.242381866125642 1 1 0 -5.7646491710464 LTS-022 chr9 19056489 19056724 236 * HAUS6 0.466 1 NA 0.904 1 NA NA NA NA NA LTS-022 chr9 19056725 21351324 2294600 * c(MIR4473, MIR4474, PLIN2, SLC24A2, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, MLLT3, HAUS6, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SCARNA8) 0.377986665060676 28 0.123505301602035 0.902641640017937 1409 0.652216768075673 2 1 1 -6.78492730945091 LTS-022 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.429 1 NA NA NA NA NA LTS-022 chr9 21367330 21441163 73834 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.394509018974924 3 0.0520480547186924 0.401368425870322 81 0.29852569269249 0 0 0 -6.91870106800426 LTS-022 chr9 21441164 33524740 12083577 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, TOPORS, CDKN2A, CDKN2B, TAF1L, LINC00032, LINGO2, ELAVL2, C9orf72, DDX58, B4GALT1, SPINK4, TUSC1, DNAJA1, IFNE, IFNA1, AQP3, AQP7, LINC01242, TMEM215, MIR31, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, CHMP5, EQTN, APTX, SMU1, MIR31HG, IFNK, BAG1, DMRTA1, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.391660705844645 56 0.0631977904224959 1.06353672665007 3228 0.635590245882878 3 2 1 -6.97853996843517 LTS-022 chr9 33524741 33528735 3995 * ANKRD18B NA 0 NA 0.799 1 NA NA NA NA NA LTS-022 chr9 33528736 33799249 270514 * c(PTENP1, ANXA2P2, ANKRD18B, PRSS3) 0.304697473937314 9 0.0818928839670728 0.758354279769454 226 0.561479420325768 4 3 1 -6.9630387750178 LTS-022 chr9 33799250 33817466 18217 * UBE2R2 NA 0 NA 2.74 1 NA NA NA NA NA LTS-022 chr9 33817467 34724201 906735 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, KIAA1161, CCL19, CCL21, C9orf24) 0.328669846604793 37 0.123268688926546 1.25552444380592 1543 0.625919315310869 3 2 1 -6.78599830278061 LTS-022 chr9 34724202 34726134 1933 * FAM205A 0.309215940756349 3 0.0980832979325906 0.502092051164642 55 0.553619498231004 7 5 2 -6.74258928725107 LTS-022 chr9 34726135 34726155 21 * FAM205A 0.286 1 NA 1.391 1 NA NA NA NA NA LTS-022 chr9 34726156 34833277 107122 * c(FAM205A, FAM205BP) 0.386929775182474 10 0.0692343042782181 0.966212986564785 93 0.510458944514244 2 1 1 -6.80089431514279 LTS-022 chr9 34833278 34833287 10 * FAM205BP NA 0 NA 0.551 1 NA NA NA NA NA LTS-022 chr9 34833288 34835727 2440 * FAM205BP 0.376661412257272 2 0.00919238815542509 0.394647074350138 74 0.240559692318368 8 5 3 -6.82602944452331 LTS-022 chr9 34835728 36834750 1999023 * c(GNE, MIR4667, MIR4475, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, RECK, HINT2, PIGO, ARHGEF39, CCIN, LINC00950, CD72, RGP1, MELK, RUSC2) 0.337122459451346 44 0.110789097394463 1.26053933180679 3526 0.659228527559553 3 2 1 -6.78451275581703 LTS-022 chr9 36834751 38414058 1579308 * c(EBLN3P, MIR4540, MIR4476, TRMT10B, ALDH1B1, FRMPD1, FBXO10, IGFBPL1, TOMM5, PAX5, EXOSC3, POLR1E, SHB, DCAF10, ZCCHC7, SLC25A51, GRHPR, ZBTB5) 0.31796391437673 21 0.19226664272505 0.921831007919985 1225 1.18747548430034 3 2 1 -6.79728124048284 LTS-022 chr9 38414059 38414157 99 * IGFBPL1 NA 0 NA 0.957 1 NA NA NA NA NA LTS-022 chr9 38414158 43861128 5446971 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.433938565230599 9 0.0703647244323776 0.621494372816403 358 0.467603531401573 2 1 1 -7.97839969231577 LTS-022 chr9 43861129 44175697 314569 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.8837873146285 8 0.393047070972422 2 NA NA -5.76656199805065 LTS-022 chr9 65602571 66457127 854557 * LOC286297 0.35 1 NA 2.15205824256246 3 0.999074738612349 6 6 0 -5.7652294982681 LTS-022 chr9 66457128 68409858 1952731 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.301205254459956 21 0.113142893217887 2.43776747497332 49 1.93598666968657 7 5 2 -6.73458458460413 LTS-022 chr9 68409859 68409869 11 * character(0) 0.376 1 NA 1.753 1 NA NA NA NA NA LTS-022 chr9 68409870 68415352 5483 * character(0) NA 0 NA 1.75078908184344 4 0.568316226526512 5 NA NA -5.76441060373324 LTS-022 chr9 68415353 90745574 22330222 * c(FRG1HP, LOC100133920, VPS13A-AS1, GAS1RR, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, CTSL, CTSLP8, RASEF, PRUNE2, DAPK1, TMEM252, ALDH1A1, SMC5, VPS13A, AGTPBP1, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, SPATA31E1, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, NA NA NA NA NA NA NA NA NA LTS-022 LOC392364, C9orf170, MIR204, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, FOXB2, NTRK2, LOC494127, C9orf135-AS1, PCA3, ABHD17B, PCSK5, GOLM1, PGM5, NMRK1, C9orf40, RFK, KIF27, PRKACG, PGM5-AS1, PGM5P2, NAA35, RORB, SLC28A3, FRG1JP, CBWD6, SPATA31C2, RPSAP9, FOXD4L6, FOXD4L5, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, PIP5K1B, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14 NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ) 0.404100609214527 178 0.116242342271377 0.877734932430351 8668 0.525667226846844 2 1 1 -6.7935319307829 LTS-022 NA NA NA NA LTS-022 chr9 90745575 90745774 200 * SPATA31C2 NA 0 NA 1.894 1 NA NA NA NA NA LTS-022 chr9 90745775 95738993 4993219 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, ANKRD19P, NXNL2, LINC00475, ECM2, S1PR3, BICD2, C9orf47, LOC286238, MIR4290HG, IARS, LINC01501, CENPP, NFIL3, ROR2, OMD, OGN, SHC3, DIRAS2, ASPN, AUH, NOL8, SPATA31C2, IPPK, SYK, SECISBP2, ZNF484, FGD3) 0.413935479390133 52 0.0807592366150308 0.996547815364759 2730 0.446716151424111 2 1 1 -7.10519656292655 LTS-022 chr9 95738994 96079955 340962 * c(SUSD3, NINJ1, WNK2, CARD19, FGD3) 0.465636091887513 8 0.0258677957534626 1.3417287017147 398 0.690400294053485 4 2 2 -8.72199887928323 LTS-022 chr9 96079956 96328200 248245 * c(FAM120AOS, FAM120A, C9orf129, WNK2) 0.434952702269638 7 0.0609148507969858 0.835600340895055 336 0.565369455974057 2 1 1 -6.83533195676996 LTS-022 chr9 96328201 96328304 104 * FAM120A NA 0 NA 1.261 1 NA NA NA NA NA LTS-022 chr9 96328305 97061995 733691 * c(MIR4291, PTPDC1, MIRLET7DHG, ZNF169, FAM120A, MIRLET7A1, MIRLET7D, MIRLET7F1, PHF2, BARX1) 0.422830586600821 15 0.12302624574804 1.18204367201177 383 0.627447763459477 4 2 2 -6.78867553170942 LTS-022 chr9 97061996 97078694 16699 * ZNF169 NA 0 NA 0.536367769787102 58 0.234426063503717 1 NA NA -5.76443273313602 LTS-022 chr9 97078695 98241296 1162602 * c(LOC100132077, MIR2278, MIR3074, LOC100507346, FANCC, FBP1, MIR23B, NUTM2F, PTCH1, MFSD14B, C9orf3, FBP2) 0.315355791710514 12 0.163461491155896 1.21303053462424 812 3.85205760878635 4 3 1 -6.74841199224803 LTS-022 chr9 98241297 99925094 1683798 * c(LINC00476, LOC100132781, LINC00092, SLC35D2, CTSV, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ZNF510, HABP4, HSD17B3, GAS2L1P2, ERCC6L2, LOC441454, LOC441455, NUTM2G, PTCH1, MFSD14C, CDC14B) 0.337905152866542 11 0.170699789636128 0.956348102044032 1222 1.60959789028595 3 2 1 -6.75822943434946 LTS-022 chr9 99925095 99959512 34418 * character(0) NA 0 NA 0.242 1 NA NA NA NA NA LTS-022 chr9 99959513 99961959 2447 * character(0) NA 0 NA 0.378179015300202 49 0.261452433532373 1 NA NA -5.76720035329066 LTS-022 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 1.576 1 NA NA NA NA NA LTS-022 chr9 100041691 101832666 1790976 * c(CCDC180, LOC100499484, ANP32B, COL15A1, TSTD2, ANKS6, FOXE1, TDRD7, LOC286359, NCBP1, TRMO, NANS, TBC1D2, HEMGN, LOC100499484-C9ORF174, TMOD1, CORO2A, XPA, GALNT12, GABBR2, TRIM14) 0.408980879011385 57 0.104966279344839 1.06432515948334 2110 0.596220709748213 3 2 1 -6.87138792894687 LTS-022 chr9 101832667 106903670 5071004 * c(MSANTD3-TMEFF1, NAMA, SMC2, SEC61B, GRIN3A, COL15A1, CYLC2, ALDOB, ERP44, INVS, MURC, STX17-AS1, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, RNF20, BAAT, TGFBR1, ZNF189, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3) 0.415045111172477 32 0.0630831184922692 0.895097376997815 2024 0.454014009658083 2 1 1 -6.78133439664661 LTS-022 chr9 106903671 107266448 362778 * SMC2 NA 0 NA 0.512 1 NA NA NA NA NA LTS-022 chr9 107266449 107457836 191388 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.446346282971417 19 0.0453152698790433 0.602498132195626 212 0.259848627511001 2 1 1 -7.29546545408698 LTS-022 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 2.512 1 NA NA NA NA NA LTS-022 chr9 107509996 115380866 7870871 * c(MIR548Q, MIR3134, MIR4668, ACTL7B, ACTL7A, AKAP2, PALM2, ZNF483, C9orf84, KIAA1958, ABCA1, LPAR1, FKTN, PTGR1, KIAA0368, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, GNG10, NA, C9orf152, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, DNAJC25, FAM206A, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PTPN3, ZNF462, RAD23B, SUSD1, LRRC37A5P, TAL2, TXN, UGCG, SVEP1, FSD1L, HSDL2, IKBKAP, CTNNAL1, KLF4, PTBP3) 0.396946294364878 110 0.132766245006695 1.01310255340502 5297 1.38813375536113 3 2 1 -6.81546248617561 LTS-022 chr9 115380867 115430565 49699 * KIAA1958 0.401548770751882 5 0.0364897245810379 1.31534374951577 198 0.558238725474406 4 2 2 -6.76307479143623 LTS-022 chr9 115430566 115430670 105 * character(0) 0.317 1 NA 1.18846737677697 3 0.750950286858813 3 3 0 -5.76441023890183 LTS-022 chr9 115430671 117074810 1644140 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.348635946665069 97 0.0866109162643555 1.33227654320375 2424 0.764844919521405 3 2 1 -6.78189162684985 LTS-022 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.226 1 NA NA NA NA NA LTS-022 chr9 117085363 117097370 12008 * c(ORM1, ORM2, AKNA) 0.422358051099043 3 0.051733290377989 0.806675894960314 108 0.694387613728592 2 1 1 -6.76936248494553 LTS-022 chr9 117097371 117097519 149 * AKNA NA 0 NA 1.608 1 NA NA NA NA NA LTS-022 chr9 117097520 117187803 90284 * c(WHRN, AKNA) 0.321840955418868 2 0.00636396103067897 1.59604673976804 271 0.876331247830727 19 13 6 -6.85547431955695 LTS-022 chr9 117187804 117187910 107 * WHRN NA 0 NA 0.847 1 NA NA NA NA NA LTS-022 chr9 117187911 124073080 6885170 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, CNTRL, BRINP1, MEGF9, TMEM268, TRIM32, ASTN2, PSMD5-AS1, WHRN, PHF19, FBXW2, GSN, TNC, MIR147A, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, LINC00474, TLR4, TRAF1, C5, TNFSF8, ATP6V1G1, TNFSF15) 0.343836899962724 46 0.128911736272507 1.17241531326777 2869 0.638871068173336 3 2 1 -6.74750596918409 LTS-022 chr9 124073081 124991112 918032 * c(MIR4478, DAB2IP, TTLL11, STOM, MORN5, LHX6, GGTA1P, GSN, NDUFA8) 0.380003073835153 19 0.0668557406546329 1.42471156610105 684 0.742664141121973 5 3 2 -6.80337223543689 LTS-022 chr9 124991113 125001824 10712 * character(0) NA 0 NA 0.901 1 NA NA NA NA NA LTS-022 chr9 125001825 125865369 863545 * c(ZBTB6, OR1L8, OR1N2, OR1N1, OR1Q1, RABGAP1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, GPR21, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, PDCL, RC3H2, PTGS1, ZBTB26, SNORD90, MRRF, RBM18) 0.324244129977275 50 0.113601027589489 1.04854719279442 1394 0.693943782092085 3 2 1 -6.80721926327348 LTS-022 chr9 125865370 140149890 14284521 * c(LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, NA NA NA NA NA NA NA NA NA LTS-022 CELP, POMT1, NEK6, SDCCAG3, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, ABCA2, ENDOG, ENG, AK1, NAIF1, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NCS1, ANGPTL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PHYHD1, CIZ1, NELFB, GPSM1, DKFZP434A062, GAPVD1, GBGT1, NR6A1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, CRB2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, QRFP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 GLT6D1, SWI5, C9orf50, CYSRT1, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, ASS1, NOTCH1, ODF2, PAEP, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, PTPA, STRBP, PPP6C, RABL6, LRRC8A, INPP5E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, DOLPP1, PTGDS, KCNT1, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, RNF224, DDX31, FAM129B, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, MIR601, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, ZNF79, C9orf16, MAPKAP1, PTGES2, BRD3, NUP214, LHX3, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, GTF3C5, GTF3C4, LHX2, TMEM203, MED27, PTGES, ENTPD2, RALGPS1, ADAMTSL2, PPP1R26, SEC16A) 0.362005039888504 576 0.0838609497076534 1.28477005331599 22288 1.20329420618409 3 2 1 -6.80206131013195 LTS-022 NA NA NA NA LTS-022 chr9 140149891 140149910 20 * NELFB NA 0 NA 2.461 1 NA NA NA NA NA LTS-022 chr9 140149911 141070283 920373 * c(NOXA1, ZMYND19, NELFB, NSMF, PNPLA7, ENTPD8, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.356489515986632 34 0.103303008603103 1.45622136975433 1558 0.715497377064289 3 2 1 -6.79299440255805 LTS-022 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 1.20826345897011 5 0.258186560455807 3 NA NA -5.76443972934137 LTS-022 chr10 94832 298735 203904 * c(ZMYND11, TUBB8) 0.265 1 NA 0.579937073882892 103 0.331707806530088 1 1 0 -5.7693922043841 LTS-022 chr10 298736 4882008 4583273 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.274759806347617 86 0.067185550690712 0.701248754499001 1706 0.367823290612671 1 1 0 -8.22632028411774 LTS-022 chr10 4882009 5091015 209007 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.26212240232666 19 0.0860016659705357 0.335622656596344 244 0.312870244624933 1 1 0 -7.16029802588078 LTS-022 chr10 5091016 5120124 29109 * AKR1C3 NA 0 NA 0.533 1 NA NA NA NA NA LTS-022 chr10 5120125 8116503 2996379 * c(MIR3155A, LINC00707, MIR3155B, NET1, AKR1C4, UCN3, KIN, GATA3, GDI2, AKR1C8P, IL2RA, IL15RA, ITIH2, LOC399715, GATA3-AS1, PRKCQ-AS1, ATP5C1, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, TUBAL3, ITIH5, CALML3, TAF3, FBXO18, RBM17, AKR1C3) 0.287489840346693 60 0.0919632019259583 0.662195999254469 2437 0.347517026949416 1 1 0 -7.58801491570188 LTS-022 chr10 8116504 11207602 3091099 * c(CELF2, SFTA1P, LINC00710, GATA3, CELF2-AS2) NA 0 NA 0.660688663674337 61 0.430823803574937 1 NA NA -6.13025470381569 LTS-022 chr10 11207603 11259366 51764 * CELF2 NA 0 NA 0.781 1 NA NA NA NA NA LTS-022 chr10 11259367 11299607 40241 * CELF2 0.427 1 NA 0.799879953960415 13 0.219403123882115 2 2 0 -5.76608409517033 LTS-022 chr10 11299608 15556788 4257181 * c(PPIAP30, MIR1265, MIR4480, OPTN, RPP38, CELF2, NUDT5, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, PROSER2, UPF2, NA, ACBD7, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, DCLRE1C, MEIG1, SUV39H2, ECHDC3, FAM107B, CCDC3, PRPF18, CDC123, NMT2, USP6NL) 0.413320508812125 71 0.0764173097628301 0.821891696961782 3142 0.52991477892874 2 1 1 -6.74297831445764 LTS-022 chr10 15556789 17813397 2256609 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.392293818734878 25 0.0671158699563672 0.689895779886284 1367 0.359099082633203 2 1 1 -7.18693996144163 LTS-022 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.12 1 NA NA NA NA NA LTS-022 chr10 17842448 18196475 354028 * c(MRC1, NA, TMEM236) 0.39 1 NA 0.305759322016893 150 0.350504444660933 0 0 0 -5.87353234975737 LTS-022 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.187 1 NA NA NA NA NA LTS-022 chr10 18198201 30306359 12108159 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, NA NA NA NA NA NA NA NA NA LTS-022 PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, LINC00202-2, CACNB2, THNSL1, MLLT10, LYZL1, PLXDC2, MASTL, ACBD5, SPAG6) 0.361931980855214 103 0.0955829688836111 0.722629147000768 5578 0.442499736133656 2 1 1 -7.6979087186606 LTS-022 NA NA NA NA LTS-022 chr10 30306360 32317529 2011170 * c(LYZL2, MAP3K8, ZNF438, ZEB1-AS1, KIF5B, MTPAP, KIAA1462, ZEB1, ARHGAP12) 0.362177164894401 14 0.0625646478838902 0.556847473477696 763 0.468901487069303 2 1 1 -7.89815735841513 LTS-022 chr10 32317530 32320038 2509 * KIF5B NA 0 NA 1.063 1 NA NA NA NA NA LTS-022 chr10 32320039 38740382 6420344 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, NA, SEPT7P9, ITGB1, KIF5B, LINC00999, PARD3, ZNF248, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, NRP1, ANKRD30A) 0.394079295212499 48 0.0796974303713829 0.682618058751317 2097 0.42434495296176 2 1 1 -7.61943334279363 LTS-022 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 1.523 1 NA NA NA NA NA LTS-022 chr10 42379883 51592690 9212808 * c(ZNF37BP, C10orf142, RSU1P2, TIMM23, MIR4294, MIR3156-1, FAM170B-AS1, LINC00840, MIR5100, NA, HNRNPA3P1, CHAT, C10orf10, C10orf71, ZNF488, AGAP4, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, GDF2, GDF10, C10orf53, LINC00841, HNRNPF, ANKRD30BP3, NA, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, MSMB, NA NA NA NA NA NA NA NA NA LTS-022 LRRC18, FXYD4, NPY4R, CSGALNACT2, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, RET, CXCL12, ZNF487, TMEM72, LINC00842, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, HNRNPA1P33, FRMPD2B, ZNF22, ZNF32, ZNF33B, OR13A1, NCOA4, ZNF239, SYT15, RASSF4, LINC00839, PARG, ZFAND4, GPRIN2, BMS1) 0.398294343071056 134 0.10510624664514 0.755725792150718 4682 0.463487114583732 2 1 1 -7.05998090020657 LTS-022 NA NA NA NA LTS-022 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.224 1 NA NA NA NA NA LTS-022 chr10 51603249 51632912 29664 * c(TIMM23, NA, PARG) 0.366405907165899 4 0.0826291917746587 0.318438134152395 42 0.21694509359584 0 0 0 -6.92670442363124 LTS-022 chr10 51632913 51632971 59 * c(NA, PARG) 0.456 1 NA 0.544 1 NA NA NA NA NA LTS-022 chr10 51632972 69902872 18269901 * c(MIR1296, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, MIR548AV, ZWINT, EGR2, C10orf107, TMEM26, RTKN2, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, DKK1, CSTF2T, SIRT1, IPMK, SGMS1, HERC4, LINC01553, ANK3, CTNNA3, A1CF, NRBF2, ANXA2P3, NA, LRRTM3, FAM21A, AGAP6, MBL2, NA, CISD1, PRKG1, DNAJC12, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, MYPN, ADO, JMJD1C-AS1, PARG, CDK1, NA NA NA NA NA NA NA NA NA LTS-022 RHOBTB1) 0.400411900658152 60 0.0913198637434611 0.688565355534652 4751 0.388349155068545 2 1 1 -8.88453614004789 LTS-022 NA NA NA NA LTS-022 chr10 69902873 69905165 2293 * MYPN NA 0 NA 1.473 1 NA NA NA NA NA LTS-022 chr10 69905166 81273684 11368519 * c(DLG5-AS1, ZNF503-AS2, LINC00856, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, EIF5AL1, USP54, FUT11, OIT3, DNA2, EIF4EBP2, ZCCHC24, UNC5B, STOX1, C10orf35, TYSND1, TBATA, ATOH7, ZSWIM8, DNAJC9, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, KIF1BP, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, HK1, ANXA7, FAM149B1, HNRNPH3, DUPD1, KCNMA1, C10orf105, C10orf55, NA NA NA NA NA NA NA NA NA LTS-022 LINC00595, DNAJC9-AS1, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, PBLD, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, AGAP5, BMS1P4, VCL, VDAC2, DDX50, SYNPO2L, HKDC1, TET1, SLC25A16, CAMK2G, C10orf11, PLA2G12B, MYPN, ZNF503, AIFM2, NDST2, SGPL1, MCU, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 DDX21, DLG5, CHST3, VPS26A, SEC24C, SPOCK2) 0.388977889487499 197 0.0981827150788088 0.823932152846035 9839 0.456112305942243 2 1 1 -6.78524623647638 LTS-022 NA NA NA NA LTS-022 chr10 81273685 81275993 2309 * EIF5AL1 0.452049254901111 4 0.0349511563947938 0.331866314201261 62 0.146367097873913 0 0 0 -7.50919208728444 LTS-022 chr10 81275994 82004400 728407 * c(BMS1P21, EIF5AL1, TMEM254-AS1, PLAC9, ANXA11, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.36413791278101 43 0.0893961779576961 0.728217613009636 542 0.508800394557967 2 1 1 -6.92286313929807 LTS-022 chr10 82004401 82004442 42 * character(0) NA 0 NA 0.351 1 NA NA NA NA NA LTS-022 chr10 82004443 82006241 1799 * character(0) 0.421 1 NA 0.271394808645127 40 0.126628266783992 0 0 0 -5.76562335669028 LTS-022 chr10 82006242 85933686 3927445 * c(NRG3, DYDC1, GHITM, SH2D4B, C10orf99, MAT1A, TSPAN14, FAM213A, DYDC2) 0.339013230464162 25 0.140244156146819 0.831710187432166 702 0.491145008359299 2 1 1 -6.8847152527137 LTS-022 chr10 85933687 85936123 2437 * C10orf99 NA 0 NA 1.751 1 NA NA NA NA NA LTS-022 chr10 85936124 88635620 2699497 * c(GRID1-AS1, LDB3, LINC00858, WAPL, LRIT1, GRID1, LRIT2, C10orf99, MIR346, CCSER2, RGR, BMPR1A, CDHR1, OPN4) 0.376344278129445 20 0.109015341749875 1.16386612331198 1146 0.694223473031185 3 2 1 -6.74413459855188 LTS-022 chr10 88635621 93624775 4989155 * c(KLLN, HECTD2-AS1, FAS-AS1, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, ADIRF, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, HECTD2, IFIT5, ANKRD1, GLUD1, FLJ37201, HTR7, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, LINC00863, IFIT1B, PANK1, FAM35A, PPP1R3C, RNLS, PTEN, STAMBPL1, ACTA2, FAM25A, LIPK, LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, PCGF5, NA NA NA NA NA NA NA NA NA LTS-022 ATAD1, LIPF, CH25H, PAPSS2, MINPP1, KIF20B) 0.400582783087105 64 0.0938223887193243 0.886403324139472 3346 0.50884271677218 2 1 1 -6.76181120111971 LTS-022 NA NA NA NA LTS-022 chr10 93624776 95454699 1829924 * c(MARK2P9, FRA10AC1, FGFBP3, CYP26A1, CPEB3, MYOF, HHEX, FFAR4, CYP26C1, IDE, KIF11, PDE6C, EXOC6, MARCH5, CEP55, RBP4, TNKS2, BTAF1) 0.373683985557249 30 0.136984167220031 1.0576125735434 1957 0.70817587575324 3 2 1 -6.75373787045755 LTS-022 chr10 95454700 95457898 3199 * FRA10AC1 NA 0 NA 0.749 1 NA NA NA NA NA LTS-022 chr10 95457899 97920546 2462648 * c(C10orf131, PLCE1-AS1, MIR3157, SORBS1, FRA10AC1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, SLC35G1, TBC1D12, TCTN3, PIPSL, HELLS, CC2D2B, PLCE1, CCNJ, ALDH18A1, NOC3L, ENTPD1-AS1, PDLIM1, LGI1, ENTPD1, ZNF518A) 0.381963174059004 38 0.124971222861047 0.845470617027144 2186 0.533249600829228 2 1 1 -6.76224928864765 LTS-022 chr10 97920547 97951484 30938 * c(BLNK, ZNF518A) NA 0 NA 2.542 1 NA NA NA NA NA LTS-022 chr10 97951485 104865211 6913727 * c(TLX1NB, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ACTR1A, NPM3, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, SFXN2, BORCS7, ABCC2, COX15, CPN1, CYP17A1, NKX2-3, DNTT, FGF8, NT5C2, PPRC1, RRP12, DNMBP, FRAT2, DPCD, SEC31B, C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, KCNIP2, TLX1, NA NA NA NA NA NA NA NA NA LTS-022 HPS1, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CUTC, SUFU, PGAM1, PITX3, CNNM2, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, FBXW4, SLIT1, SNORA12, MIR608, TLL2, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, UBTD1, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, LOXL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, NOLC1, OPALIN) 0.410944666309037 122 0.113148818799725 0.955710435535176 9427 0.543317996494873 2 1 1 -6.92961634552243 LTS-022 NA NA NA NA LTS-022 chr10 104865212 122646361 17781150 * c(MIR936, MIR1307, MIR2110, MIR4295, MIR3663, SH3PXD2A-AS1, ADD3-AS1, MIR4680, MIR4483, MIR4682, MIR4482, MIR4681, SMNDC1, PRDX3, VAX1, SEC23IP, SORCS1, PDZD8, GSTO2, SFR1, CALHM3, PNLIPRP3, SFXN4, ADD3, COL17A1, TRUB1, VTI1A, C10orf82, CACUL1, ADRA2A, ADRB1, CFAP58, DUSP5, EMX2OS, PLPP4, EMX2, RAB11FIP2, INPP5F, NT5C2, PDCD11, SORCS3, CALHM1, CASC2, HSPA12A, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, WDR11-AS1, NA NA NA NA NA NA NA NA NA LTS-022 PRLHR, GRK5, HABP2, KCNK18, VWA2, NANOS1, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, MXI1, NRAP, CALHM2, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, WDR11, TDRD1, GPAM, SHTN1, FAM160B1, RGS10, FAM204A, SNORA19, ZDHHC6, RPL13AP6, SLC18A2, TAF5, MIR609, TCF7L2, TECTB, TIAL1, RPEL1, XPNPEP1, MCMBP, PLEKHS1, OBFC1, CFAP43, SHOC2, CASP7, PCGF6, AFAP1L2, USMG5, ITPRIP, EIF3A, INA, SMC3, NEURL1, BBIP1, GSTO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 BAG3, SH3PXD2A, SLK, DCLRE1A) 0.385884334224641 182 0.130903843305287 0.869188868415896 9895 0.502257080730682 2 1 1 -6.77964190534317 LTS-022 NA NA NA NA LTS-022 chr10 122646362 122648588 2227 * WDR11 NA 0 NA 1.242 1 NA NA NA NA NA LTS-022 chr10 122648589 127731771 5083183 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, FANK1-AS1, TACC2, ATE1, BTBD16, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, FAM24B, FGFR2, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, HTRA1, BCCIP, PLEKHA1, LHPP, IKZF5, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.326577025648301 100 0.117741981219165 1.05711288620421 3798 0.655087220816656 3 2 1 -6.83862500409834 LTS-022 chr10 127731772 127734528 2757 * ADAM12 NA 0 NA 0.678 1 NA NA NA NA NA LTS-022 chr10 127734529 134166400 6431872 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, LINC00959, FOXI2, LINC01164, MGMT, MKI67, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12) 0.406445981176935 86 0.106509341414176 0.810176296650326 2154 0.467282605456248 2 1 1 -6.76911454144039 LTS-022 chr10 134166401 134693137 526737 * c(C10orf91, PWWP2B, INPP5A, CFAP46, LRRC27, NKX6-2) 0.428740611422563 9 0.0450249930594109 1.0490948370782 462 0.484558069589955 2 1 1 -6.90030131951113 LTS-022 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.483 1 NA NA NA NA NA LTS-022 chr10 134694406 134756359 61954 * CFAP46 0.360763508381763 13 0.170213892590379 0.58505362033312 180 0.828323107577137 3 2 1 -6.75785157434035 LTS-022 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.735 1 NA NA NA NA NA LTS-022 chr10 134884462 135235890 351429 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.343008733126714 16 0.184010223900739 0.946850230390281 1099 0.591118342932387 3 2 1 -6.76245520359363 LTS-022 chr10 135235891 135236144 254 * SPRN 0 1 NA 0.843039421660713 8 0.779681940647229 2 2 0 -5.76441014147425 LTS-022 chr10 135236145 135473026 236882 * c(CYP2E1, SPRNP1, FRG2B, SPRN, SCART1, SYCE1) 0.261149236397199 12 0.131053308607489 0.89826821744795 334 0.634888054501685 4 3 1 -6.84457150963166 LTS-022 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.004 1 NA NA NA NA NA LTS-022 chr11 193025 193096 72 * SCGB1C1 0.261 1 NA 0.42 1 NA NA NA NA NA LTS-022 chr11 193097 4185675 3992579 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR210HG, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, IFITM3, DEAF1, IFITM2, OR7E12P, KCNQ1OT1, PKP3, ODF3, OSBPL5, LRRC56, MRGPRE, ART5, LOC143666, SCGB1C1, CTSD, AP2A2, NLRP6, LOC171391, DRD4, DUSP8, SIRT3, TOLLIP-AS1, LMNTD2, PGAP2, H19, CRACR2B, TMEM80, MRGPRG-AS1, C11orf21, TRPM5, HRAS, ANO9, KRTAP5-AS1, B4GALNT4, PDDC1, IGF2, INS, IRF7, KCNQ1, MRGPRG, KRTAP5-1, NA NA NA NA NA NA NA NA NA LTS-022 KRTAP5-3, IFITM5, FAM99A, RHOG, IFITM10, LSP1, MIR210, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, BET1L, CEND1, CDHR5, POLR2L, TOLLIP, PIDD1, KCNQ1DN, CHRNA10, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, MRPL23, RPLP2, MIR483, SNORA52, RRM1, SCT, EPS8L2, TSSC2, CHID1, SNORA54, STIM1, TALDO1, TH, TSPAN4, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 MUC5B, ZNF195, SLC25A22, PGGHG, RASSF7, PTDSS2, MOB2, CARS, IFITM1, SYT8, BRSK2, CD81, CD151) 0.255090073344335 305 0.0933755105972251 0.633565667286842 7487 0.463192491193556 1 1 0 -7.07856602468693 LTS-022 NA NA NA NA LTS-022 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.36 1 NA NA NA NA NA LTS-022 chr11 4229252 4967735 738484 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, TRIM21, OR51G1, OR51G2, OR51E2) 0.209970847275087 23 0.125022812147673 0.440488070885415 777 0.364710242507569 1 1 0 -6.87716333674769 LTS-022 chr11 4967736 4976978 9243 * c(OR51A4, OR51A2) NA 0 NA 0.138173073071362 39 0.168605033198814 0 NA NA -5.82091707149736 LTS-022 chr11 4976979 5009215 32237 * character(0) NA 0 NA 0.728 1 NA NA NA NA NA LTS-022 chr11 5009216 5510276 501061 * c(OR52E2, OR52J3, OR51L1, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, MMP26, OR51B4, OR51B2) 0.234862480231373 13 0.0635300252051272 0.371035183460074 607 0.212270218271936 1 1 0 -7.6034184055529 LTS-022 chr11 5510277 5732092 221816 * c(TRIM22, TRIM6, UBQLNL, OR51B5, HBE1, HBG2, OR52B6, OR52D1, OR52H1, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM5) 0.215087835035064 33 0.0720032354071045 0.552535852952064 542 0.366166292304636 1 1 0 -6.73533892986857 LTS-022 chr11 5732093 5755335 23243 * c(TRIM22, TRIM5) NA 0 NA 0.204 1 NA NA NA NA NA LTS-022 chr11 5755336 6220663 465328 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR56B1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.247166554541829 32 0.086085754085398 0.361785981246795 482 0.239673153705495 1 1 0 -7.50231062788196 LTS-022 chr11 6220664 6735905 515242 * c(TRIM3, PRKCDBP, TPP1, OR52W1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, GVINP1, MRPL17, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.170091165044366 11 0.0735696330634516 0.564481516245694 1927 0.283536249824021 1 1 0 -6.99537207533139 LTS-022 chr11 6735906 7078963 343058 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, NLRP14, OR2AG2, OR10A2, GVINP1, ZNF214, ZNF215, OR6A2) 0.226169681758338 38 0.0747441154075102 0.371494794001879 536 0.265273253028821 1 1 0 -7.13031615508203 LTS-022 chr11 7078964 7981466 902503 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, RBMXL2, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, OR10A6, CYB5R2, PPFIBP2) 0.216950180586487 13 0.117794584351591 0.476276750108739 729 0.261739146446987 1 1 0 -6.8638552281421 LTS-022 chr11 7981467 9316730 1335264 * c(MIR5691, DENND5A, KRT8P41, NLRP10, LMO1, TMEM41B, TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, RPL27A, SNORA3A, STK33, ST5, SNORA3B, TUB, RIC3, EIF3F, TRIM66) 0.205586881403868 37 0.0819703491400283 0.607680676899953 1972 0.606838612431014 1 1 0 -6.77755181968316 LTS-022 chr11 9316731 9610540 293810 * c(IPO7, TMEM41B, LOC644656, SNORA23, WEE1, ZNF143) NA 0 NA 0.582063818862372 390 0.350678968811692 1 NA NA -5.77155202995918 LTS-022 chr11 9610541 9830595 220055 * c(SWAP70, SBF2-AS1, LOC440028, WEE1, SBF2) 0.426 1 NA 0.986755108117654 259 0.531887628098273 2 2 0 -5.77519912315079 LTS-022 chr11 9830596 17409793 7579198 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MRVI1, SPON1, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, DKK3, AMPD3, SBF2-AS1, CSNK2A3, GALNT18, NCR3LG1, KCNJ11, INSC, ARNTL, NUCB2, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, PSMA1, PTH, ZBED5, RPS13, RASSF10, SNORD97, TEAD1, ZBED5-AS1, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.431040656222614 52 0.0758123029529818 0.904556725899017 4180 0.720752921726375 2 1 1 -6.81764893492317 LTS-022 chr11 17409794 17662629 252836 * c(USH1C, OTOG, KCNJ11, ABCC8) 0.150095680551489 5 0.239506158584701 1.18601270653055 684 1.48018698263275 2 2 0 -6.74180950731573 LTS-022 chr11 17662630 17663383 754 * OTOG NA 0 NA 0.847 1 NA NA NA NA NA LTS-022 chr11 17663384 36511059 18847676 * c(LOC100126784, C11orf91, CCDC179, SPTY2D1-AS1, DCDC5, SAA2-SAA4, MIR4486, MIR3973, MIR4694, MIR1343, NAV2-AS5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, DBX1, DNAJC24, ARL14EP, LDLRAD3, MUC15, SPTY2D1, TMEM86A, CSTF3, SLC5A12, LDHAL6A, METTL15, IMMP1L, ELF5, ANO5, FANCF, FJX1, FSHB, KIAA1549L, SVIP, ABTB2, PAMR1, MRGPRX1, GAS2, FBXO3, SERGEF, EHF, ELP4, LINC00294, NA NA NA NA NA NA NA NA NA LTS-022 IGSF22, COMMD9, GTF2H1, LUZP2, CSTF3-AS1, OTOG, DCDC1, KCNA4, KCNC1, FIBIN, LDHA, LDHC, NAV2-AS4, LMO2, CAPRIN1, DKFZp686K1684, MYOD1, NELL1, CCDC73, LOC494141, BDNF-AS, PAX6, APIP, WT1-AS, ZDHHC13, TRIM44, NAT10, UEVLD, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, SAA1, SAA2, SAA3P, SAA4, ANO3, SLC1A2, MIR610, TPH1, TRAF6, TSG101, MPPED2, WT1, PRRG4, E2F8, QSER1, PRR5L, CSRP3, PDHX, KIF18A, BBOX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CAT, PTPN5, NAV2, CCDC34, SLC6A5, DEPDC7, CD44, CD59) 0.404025901015992 197 0.104832759374645 0.888628769615022 10024 0.543806140520414 2 1 1 -6.81956868714255 LTS-022 NA NA NA NA LTS-022 chr11 36511060 43515524 7004465 * c(LOC100507205, C11orf74, HNRNPKP3, TTC17, LRRC4C, RAG1, RAG2, TRAF6, API5) 0.365317328615632 9 0.146937155878892 0.701988842677444 641 0.433079373408613 2 1 1 -7.49199811021177 LTS-022 chr11 43515525 43515622 98 * TTC17 NA 0 NA 1.626 1 NA NA NA NA NA LTS-022 chr11 43515623 45263340 1747718 * c(MIR670, ALKBH3-AS1, EXT2, ALKBH3, LOC221122, CD82, C11orf96, ACCSL, MIR129-2, HSD17B12, TTC17, PRDM11, SYT13, ALX4, SEC14L1P1, ACCS, TSPAN18, TP53I11) 0.446143180274215 38 0.0890146630719949 0.947119491065004 1066 0.480207657049308 2 1 1 -6.88820319441619 LTS-022 chr11 45263341 45265879 2539 * SYT13 0 1 NA 1.12686345373569 45 0.622854322511056 3 3 0 -5.76441212751091 LTS-022 chr11 45265880 48388748 3122869 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, OR4X2, OR4B1, LARGE2, CRY2, C11orf94, DDB2, F2, NUP160, FNBP4, MTCH2, OR4C3, OR4S1, HARBI1, PACSIN3, DKFZp779M0652, OR4X1, ARHGAP1, FAM180B, OR4C45, LRP4, MDK, MYBPC3, NDUFS3, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PSMC3, SYT13, PTPRJ, RAPSN, SPI1, SNORD67, C11orf49, ZNF408, AGBL2, ARFGAP2, DGKZ, NA NA NA NA NA NA NA NA NA LTS-022 CHST1, MADD, CREB3L1, SLC39A13, PEX16, MAPK8IP1, ATG13, CKAP5) 0.371559204697873 143 0.0973012033843637 0.89822581135398 4602 0.50237804627618 2 1 1 -6.84836954632503 LTS-022 NA NA NA NA LTS-022 chr11 48388749 48453725 64977 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-022 chr11 48453726 49208333 754608 * c(FOLH1, TRIM49B, OR4A47, TRIM64C) 0.29961176771164 6 0.161717861309958 0.707692713325874 188 0.496964997200377 1 1 0 -7.00482407187932 LTS-022 chr11 49208334 51527703 2319370 * c(OR4C46, FOLH1, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 0.599403639488739 281 0.451245056388543 1 NA NA -5.83196189173742 LTS-022 chr11 55035776 55135435 99660 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) 0.451 1 NA 0.442731356438483 27 0.713058687842517 1 1 0 -5.76925206385845 LTS-022 chr11 55135436 55370827 235392 * c(OR4C16, OR4C15, OR4A15) 0.459570904851605 7 0.022246455041304 0.583579672639828 75 0.21876199828099 2 1 1 -9.21133868896398 LTS-022 chr11 55370828 55419421 48594 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.23919924243863 65 0.0615093684234048 0 NA NA -5.76490597095375 LTS-022 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.631 1 NA NA NA NA NA LTS-022 chr11 55432533 56854968 1422436 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51) 0.393921051703443 81 0.0827263412152635 0.558115518582622 1033 0.301973885802418 2 1 1 -8.05811231808708 LTS-022 chr11 56854969 56949188 94220 * character(0) NA 0 NA 1.073 1 NA NA NA NA NA LTS-022 chr11 56949189 57479719 530531 * c(PRG3, CLP1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SLC43A3, RTN4RL2, MIR130A, P2RX3, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.453720969981 9 0.0472546294028426 1.01419426037792 1253 0.514703985416439 2 1 1 -7.25379025850754 LTS-022 chr11 57479720 58956735 1477016 * c(TMX2-CTNND1, GLYAT, CNTF, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, DTX4, SELENOH, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5B3, TMX2, FAM111A, BTBD18, ZFP91, OR10W1, GLYATL1, LPXN) 0.433230058369833 21 0.0442722637023829 0.744233313695209 1311 0.408312167039794 2 1 1 -6.98769258180831 LTS-022 chr11 58956736 59282844 326109 * c(MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, DTX4, OR5AN1, OR4D10, OR4D9) NA 0 NA 0.812562905607274 322 0.43649303058304 2 NA NA -5.76622526237108 LTS-022 chr11 59282845 59282868 24 * OR4D9 NA 0 NA 1.099 1 NA NA NA NA NA LTS-022 chr11 59282869 59343619 60751 * c(OR4D9, OSBP) 0.302 1 NA 1.37925527235912 46 0.35612669202539 4 4 0 -5.76528782935178 LTS-022 chr11 59343620 59612785 269166 * c(MIR3162, PATL1, GIF, OR10V1, OSBP, MRPL16, STX3, OR10V2P) NA 0 NA 1.31413099571411 438 0.672457546558247 4 NA NA -5.76824340260418 LTS-022 chr11 59612786 60511426 898641 * c(OOSP2, MS4A2, MS4A6E, GIF, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, MS4A8, MS4A14, MS4A1, MS4A3) 0.29798701282761 18 0.150143166971512 0.939197404587324 849 0.662504816184077 3 2 1 -6.89026390923463 LTS-022 chr11 60511427 60511508 82 * character(0) NA 0 NA 1.224 1 NA NA NA NA NA LTS-022 chr11 60511509 62284078 1772570 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, FTH1, TKFC, DKFZP434K028, PRPF19, MS4A10, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, SYT7, CD5, CD6, FADS2) 0.337683739899806 92 0.0846506063491544 1.3153797254385 3536 0.783140836640144 3 2 1 -6.81113872745133 LTS-022 chr11 62284079 62284103 25 * AHNAK NA 0 NA 0.769 1 NA NA NA NA NA LTS-022 chr11 62284104 62300063 15960 * AHNAK NA 0 NA 0.805072113823625 255 0.24072544335141 2 NA NA -5.76484511365242 LTS-022 chr11 62300064 62300069 6 * AHNAK NA 0 NA 1.171 1 NA NA NA NA NA LTS-022 chr11 62300070 64085298 1785229 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, STIP1, PLA2G16, CHRM1, SLC22A9, HRASLS5, COX8A, C11orf84, EEF1G, MARK2, ESRRA, LRRN4CL, HNRNPUL2, FKBP2, GANAB, SNHG1, FLRT1, EML3, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, TTC9C, SLC22A24, RCOR2, MACROD1, DNAJC4, TMEM179B, SLC22A25, SLC22A10, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, OTUB1, GPR137, BAD, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, NA NA NA NA NA NA NA NA NA LTS-022 SNORA57, VEGFB, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, INTS5, FERMT3, TRPT1, NUDT22, LGALS12, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.361921494469923 98 0.0891714414538966 1.21130299562819 4561 0.715751094657613 3 2 1 -6.73819849879252 LTS-022 NA NA NA NA LTS-022 chr11 64085299 64085311 13 * character(0) NA 0 NA 1.67 1 NA NA NA NA NA LTS-022 chr11 64085312 65421154 1335843 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, MIR4489, MIR4690, KCNK7, LOC100996455, RASGRP2, CDC42EP2, SSSCA1, EHD1, CDCA5, BATF2, SLC22A12, GPHA2, FAU, TIGD3, ATG2A, FAM89B, POLA2, SSSCA1-AS1, EHBP1L1, PRDX5, MAJIN, SLC25A45, NEAT1, CCDC88B, SAC3D1, MALAT1, SPDYC, PCNX3, ARL2, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, PPP2R5B, CDC42BPG, SLC22A11, SCYL1, PYGM, MAP4K2, RELA, DPF2, SIPA1, TM7SF2, NA NA NA NA NA NA NA NA NA LTS-022 VPS51, MRPL49, ZNHIT2, SF1, ZFPL1, CAPN1, FRMD8, SYVN1, RPS6KA4, NRXN2) 0.332406394361278 41 0.0719151939575443 1.45463671963258 4769 0.774395767406317 3 2 1 -6.90263942964076 LTS-022 NA NA NA NA LTS-022 chr11 65421155 65687517 266363 * c(KAT5, DRAP1, CFL1, CCDC85B, CTSW, SNX32, EFEMP2, OVOL1, RELA, MUS81, FOSL1, C11orf68, RNASEH2C, AP5B1, FIBP) 0.377442850126751 11 0.0579506059267091 1.16039741226971 921 0.517233299969891 3 2 1 -6.77692292671709 LTS-022 chr11 65687518 65687763 246 * DRAP1 NA 0 NA 1.965 1 NA NA NA NA NA LTS-022 chr11 65687764 65744600 56837 * c(DRAP1, TSGA10IP, SART1) 0.332180073222682 6 0.0190411834366109 2.15580068170311 157 1.13541165072827 18 12 6 -6.80875570331072 LTS-022 chr11 65744601 65745012 412 * SART1 NA 0 NA 1.1 1 NA NA NA NA NA LTS-022 chr11 65745013 73744710 7999698 * c(LOC100129216, LOC100130987, LOC100133315, MIR548K, MIR3165, MIR3664, RBM14-RBM4, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, CDK2AP2, TCIRG1, RBM14, STARD10, YIF1A, SF3B2, B4GAT1, CHKA, MRGPRD, MRGPRF, ARAP1, CATSPER1, CPT1A, CST6, GRK2, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, DEFB108B, PELI3, CNIH2, ZDHHC24, NA NA NA NA NA NA NA NA NA LTS-022 C11orf86, NUDT8, TMEM151A, BRMS1, ANAPC15, C2CD3, MYEOV, NPAS4, ALG1L9P, GSTP1, RHOD, SLC29A2, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, DNAJB13, KRTAP5-9, KRTAP5-10, GPR152, DOC2GP, FLJ42102, PHOX2A, LRP5, MIR139, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, P2RY2, P2RY6, PC, GAL, KMT5B, COA4, PDE2A, CABP2, MRPL48, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP6R3, RNF121, PACS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CABP4, CD248, CORO1B, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PLEKHB1, RAB6A, RAD9A, RBM4, CCND1, RPS6KB2, FAM86C2P, KLC2, MRPL11, SPTBN2, UCP2, UCP3, LRFN4, C11orf80, TMEM134, PAAF1, CLPB, UNC93B1, RAB1B, RBM4B, EIF1AD, RELT, PPFIA1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, AIP, SART1, SYT12, ACY3, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.312332048931563 153 0.105544683279446 1.42851081030891 10967 0.803623056607691 4 3 1 -6.76152349624067 LTS-022 NA NA NA NA LTS-022 chr11 73744711 77333584 3588874 * c(KCNE3, TPBGL, MIR4696, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, RNF169, CHRDL2, TSKU, C2CD3, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, OR2AT4, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, OMP, PAK1, PPME1, ACER3, THAP12, EMSY, SNORD15A, RPS3, CAPN5, UVRAG, WNT11, MOGAT2, GDPD5, DGAT2, SERPINH1, SPCS2) 0.343570284333383 68 0.0935630711764631 1.27609485408826 4112 0.749160319576264 3 2 1 -6.79503986993051 LTS-022 chr11 77333585 77373471 39887 * CLNS1A 0.402 1 NA 1.47717805828553 75 0.583532369544575 4 4 0 -5.76442261108581 LTS-022 chr11 77373472 82641317 5267846 * c(MIR708, KCTD21-AS1, MIR4300, NDUFC2-KCTD14, MIR5579, DDIAS, FAM181B, TENM4, KCTD21, AAMDC, NDUFC2, RSF1, PRCP, USP35, KCTD14, THRSP, ALG8, NARS2, INTS4, GAB2) 0.332675285301715 20 0.0978125355221055 1.31664981664519 1589 0.845443605898563 3 2 1 -6.86281590616584 LTS-022 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.391 1 NA NA NA NA NA LTS-022 chr11 82642812 82645376 2565 * DDIAS 0.324 1 NA 0.416299278220128 54 0.0915135809574218 1 1 0 -5.77723883200105 LTS-022 chr11 82645377 82645467 91 * DDIAS NA 0 NA 1.853 1 NA NA NA NA NA LTS-022 chr11 82645468 88242691 5597224 * c(SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, DDIAS, CCDC83, CCDC89, RAB38, RAB30, GRM5, ANKRD42, HIKESHI, PCF11, SYTL2, TMEM126B, CREBZF, CCDC90B, CCDC81, TMEM135, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.336308308151496 62 0.0975815121175066 1.04219735960725 2786 0.673537414742539 3 2 1 -6.84749021953996 LTS-022 chr11 88242692 88245423 2732 * c(GRM5-AS1, GRM5) NA 0 NA 0.586 1 NA NA NA NA NA LTS-022 chr11 88245424 92565070 4319647 * c(NAALAD2, MIR4490, GRM5-AS1, FAT3, TRIM64, FOLH1B, CHORDC1, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.3138010065254 12 0.0647996329020653 0.840755309929959 1048 0.63277659411183 3 2 1 -7.62777673049332 LTS-022 chr11 92565071 94703312 2138242 * c(MIR1304, GPR83, SLC36A4, FAT3, PIWIL4, AMOTL1, DEUP1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, MRE11A, MTNR1B, CWC15, ANKRD49, SMCO4, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.261553698909739 47 0.0946017799106189 1.0578271952652 2225 0.571277792030892 4 3 1 -7.16788740248544 LTS-022 chr11 94703313 94704102 790 * CWC15 NA 0 NA 0.572 1 NA NA NA NA NA LTS-022 chr11 94704103 103909166 9205064 * c(WTAPP1, MIR1260B, MIR3920, MIR4693, JRKL-AS1, LOC101054525, YAP1, TMEM123, FAM76B, SESN3, ARHGAP42, ENDOD1, ANGPTL5, BIRC2, BIRC3, KDM4E, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CWC15, PGR, CNTN5, KDM4D, CEP126, MMP27, TRPC6, DYNC2H1, CCDC82, PDGFD, TMEM133, DCUN1D5, MAML2, C11orf70, JRKL, MTMR2, MMP20, CEP57) 0.298277520438852 94 0.0875602795926481 0.853482044502234 4035 0.481619863954115 2 1 1 -7.57450846334683 LTS-022 chr11 103909167 104035130 125964 * c(DDI1, PDGFD) NA 0 NA 0.941861965705166 33 0.355119164805451 2 NA NA -5.77108799834447 LTS-022 chr11 104757419 104839222 81804 * c(CASP12, LOC643733, CASP4) 0.426 1 NA 0.442281445625212 97 0.209673958872364 1 1 0 -5.81051865672687 LTS-022 chr11 104839223 106849556 2010334 * c(CARD16, KBTBD3, GRIA4, GUCY1A2, CARD17, CARD18, AASDHPPT, CASP1, CASP4, CASP5, MSANTD4) 0.436985280248325 12 0.047430571269057 0.482458503495776 798 0.278352292210123 2 1 1 -9.84685607155253 LTS-022 chr11 106849557 106856746 7190 * GUCY1A2 NA 0 NA 1.198 1 NA NA NA NA NA LTS-022 chr11 106856747 114262468 7405722 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANKK1, TIMM8B, GUCY1A2, HSPB2, HTR3A, C11orf53, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, ATM, NNMT, NPAT, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, TTC12, PPP2R1B, C11orf57, ELMOD1, TEX12, ARHGAP20, USP28, PTS, RDX, NA NA NA NA NA NA NA NA NA LTS-022 SDHD, LOC643923, CLDN25, C11orf1, SLN, ZBTB16, ALG9, CUL5, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ALKBH8, ZW10, FDXACB1) 0.420279584748507 99 0.0858172301482125 0.63052518842523 5599 0.375963622418939 2 1 1 -8.69328822086096 LTS-022 NA NA NA NA LTS-022 chr11 114262469 114270620 8152 * C11orf71 NA 0 NA 0.335 1 NA NA NA NA NA LTS-022 chr11 114270621 114578494 307874 * c(RBM7, NXPE1, NXPE2, REXO2, C11orf71, NXPE4) 0.40572441717024 27 0.0589585058588276 0.445867004221807 416 0.276733153795144 0 0 0 -7.56852937721799 LTS-022 chr11 114578495 114578652 158 * character(0) NA 0 NA 0.711 1 NA NA NA NA NA LTS-022 chr11 114578653 117283630 2704978 * c(BACE1-AS, LOC100652768, APOA5, CEP164, SIK3, BACE1, CADM1, RNF214, LINC00900, APOA1, APOA4, APOC3, PAFAH1B2, SIDT2, TAGLN, BUD13, ZPR1, PCSK7) 0.432424740717187 37 0.0693370256293355 0.631317347246966 1686 0.32032197255748 2 1 1 -7.92667865213231 LTS-022 chr11 117283631 117391966 108336 * c(CEP164, DSCAML1) 0.451465181766234 5 0.0529499763928182 0.826949748793911 185 0.399826382121275 2 1 1 -7.08676874991749 LTS-022 chr11 117391967 117403235 11269 * DSCAML1 0.345 1 NA 0.873991854962016 15 0.289592784703592 2 2 0 -5.76448675960051 LTS-022 chr11 117403236 120857863 3454628 * c(LOC100131626, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, TMEM136, OAF, PHLDB1, ARHGEF12, TRIM29, SLC37A4, POU2F3, HINFP, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, LOC649133, RPL23AP64, THY1, NA NA NA NA NA NA NA NA NA LTS-022 UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, TMEM25, CBL, USP2, CD3D, CD3E, CD3G, UBE4A, C2CD2L) 0.271690542348654 101 0.0716444480102476 0.955027868215371 6090 0.696178223247339 4 3 1 -7.45536293251332 LTS-022 NA NA NA NA LTS-022 chr11 120857864 123624894 2767031 * c(MIR4493, TBCEL, HSPA8, LOC341056, BSX, OR6X1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.281974801942083 41 0.0904701945259375 0.841242405844622 1829 0.517855859328991 3 2 1 -7.72465458016556 LTS-022 chr11 123624895 124502469 877575 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A, TBRG1) 0.324783165683044 51 0.0659434041358164 0.603867669591538 846 0.345586897485946 1 1 0 -8.02496094106203 LTS-022 chr11 124502470 124502541 72 * TBRG1 NA 0 NA 1.257 1 NA NA NA NA NA LTS-022 chr11 124502542 134856661 10354120 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, ACAD8, B3GAT1, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, ZBTB44, THYN1, DDX25, APLP2, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, SNX19, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, NA NA NA NA NA NA NA NA NA LTS-022 SIAE, ROBO4, FOXRED1, ACRV1, PRDM10, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, FAM118B, MSANTD2, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.278129827787971 167 0.0870262712768958 0.876691170119667 7008 0.577880129992511 2 1 1 -7.88226978458878 LTS-022 NA NA NA NA LTS-022 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.515 1 NA NA NA NA NA LTS-022 chr12 90923 248202 157280 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.459 1 NA 1.20068077278896 51 0.553609082720459 3 3 0 -5.76492562022148 LTS-022 chr12 248203 3395735 3147533 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CACNA2D4) 0.345151667824413 74 0.106534331861776 1.01042374302535 3483 0.517817942434315 3 2 1 -6.86706394713108 LTS-022 chr12 3395736 3407321 11586 * character(0) NA 0 NA 0.836 1 NA NA NA NA NA LTS-022 chr12 3407322 5603612 2196291 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PRMT8, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.367909281446773 36 0.061553435296703 0.80511248366903 1495 0.545840188173378 2 1 1 -7.00791723458653 LTS-022 chr12 5603613 7470737 1867125 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, ACSM4, LAG3, LTBR, MIR141, MIR200C, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ANO2, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, NA NA NA NA NA NA NA NA NA LTS-022 CD27, CLSTN3, NCAPD2) 0.329107386151519 94 0.0747522469322084 0.968574573960805 4241 0.547570946673082 3 2 1 -6.95600156921946 LTS-022 NA NA NA NA LTS-022 chr12 7470738 7473317 2580 * ACSM4 NA 0 NA 0.438 1 NA NA NA NA NA LTS-022 chr12 7473318 8077160 603843 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, SLC2A3, NANOG, CD163, GDF3) 0.323186257350569 12 0.0654110545749422 0.689305324980996 719 0.442635817484931 3 2 1 -7.38699580643001 LTS-022 chr12 8077161 8078535 1375 * SLC2A3 NA 0 NA 2.057 1 NA NA NA NA NA LTS-022 chr12 8078536 9090446 1011911 * c(A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.418688966238578 19 0.0555010668460763 0.977445894820095 1101 0.59189317515088 2 1 1 -6.78417906689337 LTS-022 chr12 9090447 9093784 3338 * c(PHC1, M6PR) 0.467 1 NA 0.340620223947356 53 0.231812503998727 0 0 0 -5.76927511721301 LTS-022 chr12 9093785 9590665 496881 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.364010200821255 31 0.0785982160732193 0.960830720800773 692 0.525969273476559 3 2 1 -6.76899830350063 LTS-022 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.186 1 NA NA NA NA NA LTS-022 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.1771875750032 95 0.140222461231497 0 NA NA -5.9773552025629 LTS-022 chr12 9717936 9747240 29305 * character(0) NA 0 NA 1.132 1 NA NA NA NA NA LTS-022 chr12 9747241 11287290 1540050 * c(KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.35303996199907 66 0.125327536380842 0.753964305729526 2007 0.505796678668975 2 1 1 -6.90174257076394 LTS-022 chr12 11287291 11338533 51243 * c(SMIM10L1, PRH1-PRR4, PRB4) NA 0 NA 1.297 1 NA NA NA NA NA LTS-022 chr12 11338534 11338614 81 * c(TAS2R42, PRB4) 0.278130848493559 6 0.0816014705749841 1.09611129581214 7 0.22678760779112 15 11 4 -6.73507337156498 LTS-022 chr12 11338615 11338669 55 * c(TAS2R42, PRB4) 0.497 1 NA 0.796 1 NA NA NA NA NA LTS-022 chr12 11338670 32944542 21605873 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-022 SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.398313877367618 296 0.101427704542399 0.920916519854742 11859 0.554914138662455 2 1 1 -7.01810702225976 LTS-022 NA NA NA NA LTS-022 chr12 32944543 34182669 1238127 * c(SYT10, PKP2, ALG10) NA 0 NA 0.811839798168588 269 0.485063651255477 2 NA NA -5.77022550619303 LTS-022 chr12 38710341 39836937 1126597 * c(ALG10B, CPNE8, KIF21A) 0.498 1 NA 0.715206009571524 395 0.35484540467946 2 2 0 -5.91510517898881 LTS-022 chr12 39836938 48104695 8267758 * c(PCED1B-AS1, MIR4698, YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ANO6, ARID2, ABCD2, C12orf40, GXYLT1, PDZRN4, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, SLC38A2, SLC38A4, KIF21A, TWF1, RNY5, RPAP3, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, ENDOU, PCED1B, SCAF11) 0.347014493796881 42 0.170878192178338 0.764760514896703 4378 0.470849583781171 2 1 1 -7.03952997305309 LTS-022 chr12 48104696 48105407 712 * ENDOU NA 0 NA 1.231 1 NA NA NA NA NA LTS-022 chr12 48105408 52307016 4201609 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, ANKRD33, H1FNT, OR8S1, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, FIGNL2, ASIC1, ATF1, SLC11A2, DHH, FKBP11, BIN2, NA NA NA NA NA NA NA NA NA LTS-022 LIMA1, HDAC7, PFKM, POU6F1, KANSL2, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.41564802800597 179 0.0988789868757338 0.929259584276957 8716 0.93047012387793 2 1 1 -6.75990021380828 LTS-022 NA NA NA NA LTS-022 chr12 52307017 55041081 2734065 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, DCD, SP7, GTSF1, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NCKAP1L, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, IGFBP6, ITGA5, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, NA NA NA NA NA NA NA NA NA LTS-022 KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, KRT76, CSAD, PDE1B, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, CALCOCO1, RARG, C12orf10, ATG101, GLYCAM1, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, LACRT, ACVR1B, KRT75, ACVRL1, ESPL1) 0.427463736857766 119 0.0925019468416288 1.00449433346353 6222 1.02882837233025 2 1 1 -6.7997920857022 LTS-022 NA NA NA NA LTS-022 chr12 55041082 55042015 934 * DCD NA 0 NA 0.566 1 NA NA NA NA NA LTS-022 chr12 55042016 56075832 1033817 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, METTL7B, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.4371614968335 29 0.0549482066924773 0.58182108002986 671 0.324263687519857 2 1 1 -7.61652910676851 LTS-022 chr12 56075833 58119746 2043914 * c(MIR1228, BLOC1S1-RDH5, CDK2, RNF41, GDF11, CNPY2, DCTN2, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, MYL6B, CS, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MARS, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, NA NA NA NA NA NA NA NA NA LTS-022 RBMS2, RDH5, RPL41, RPS26, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, COQ10A, CD63, ZBTB39, PAN2) 0.440676552498277 122 0.089393697954493 0.935940139088708 7258 0.486831447070583 2 1 1 -6.85530265204525 LTS-022 NA NA NA NA LTS-022 chr12 58119747 72319390 14199644 * c(LOC100130075, AGAP2-AS1, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, TSFM, CTDSP2, CDK4, TMEM5, CCT2, AVIL, FRS2, CPSF6, WIF1, IRAK3, XPOT, C12orf56, AGAP2, RAB3IP, LRIG3, CPM, BEST3, C12orf66, CYP27B1, ZFC3H1, RPSAP52, RAB21, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, METTL21B, KCNMB4, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, LRRC10, FLJ41278, MIRLET7I, LYZ, NA NA NA NA NA NA NA NA NA LTS-022 MIR26A2, MDM2, METTL1, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TSPAN31, TBC1D15, MIR548C, TSPAN8, MRS2P2, YEATS4, HMGA2, THAP2, LLPH, DYRK2, LGR5, ATP23, SLC16A7, HELB, MARCH9, USP15) 0.40766361461711 167 0.107453477550399 0.849485195184563 8646 0.526872856774356 2 1 1 -6.733398896819 LTS-022 NA NA NA NA LTS-022 chr12 72319391 93149718 20830328 * c(MIR1252, LOC100507377, POC1B-GALNT4, MIR4699, MIR548AL, GLIPR1, KERA, KRR1, OSBPL8, TPH2, GLIPR1L2, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, PHLDA1, ZDHHC17, LINC01619, GLIPR1L1, MGAT4C, POC1B, OTOGL, TRHDE-AS1, CCDC59, TRHDE, LINC00936, C12orf74, PTPRQ, KCNC2, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, NAP1L1, ATP2B1, NTS, PAWR, SLC6A15, ATXN7L3B, CLLU1OS, NA NA NA NA NA NA NA NA NA LTS-022 CLLU1, TBC1D15, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, BBS10, CEP290, ALX1, LRRIQ1, METTL25, CAPS2, PPFIA2, GALNT4, LIN7A, NAV3, C12orf29, RASSF9) 0.409711830133723 106 0.105269733975558 0.775643479849666 6524 0.446083807330001 2 1 1 -7.18901226948896 LTS-022 NA NA NA NA LTS-022 chr12 93149719 93150054 336 * PLEKHG7 NA 0 NA 1.72 1 NA NA NA NA NA LTS-022 chr12 93150055 93793115 643061 * c(NUDT4, PLEKHG7, LOC643339, EEA1) 0.43 1 NA 1.07701146787585 375 0.768517837729933 3 3 0 -5.76740987442956 LTS-022 chr12 93793116 93795950 2835 * NUDT4 0.242 1 NA 0.45461365331263 65 0.323635012992438 1 1 0 -5.76491586779625 LTS-022 chr12 93795951 93796068 118 * NUDT4 NA 0 NA 0.85 1 NA NA NA NA NA LTS-022 chr12 93796069 99478816 5682748 * c(TMPO-AS1, PGAM1P5, MIR1251, MIR4303, MIR3685, MIR5700, PLXNC1, METAP2, NUDT4, CCDC38, NEDD1, SLC9A7P1, IKBIP, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, RMST, ELK3, MRPL42, HAL, APAF1, LTA4H, MIR135A2, MIR331, CEP83, CDK17, SLC25A3, VEZT, FGD6, NDUFA12, ANKS1B, TMCC3, NTN4, LOC643711, LOC643770, SNRPF, SNORA53, TMPO, NR2C1, UBE2N, USP44, CRADD, SOCS2) 0.399885750602527 63 0.0632302135678356 0.98373501780754 3696 0.547908326900076 2 1 1 -6.98962234543142 LTS-022 chr12 99478817 99548011 69195 * ANKS1B NA 0 NA 0.545 1 NA NA NA NA NA LTS-022 chr12 99548012 108961828 9413817 * c(LOC100287944, MIR1827, MIR3652, MIR3922, LOC100505978, CKAP4, PRDM4, PWP1, FICD, DEPDC4, C12orf45, ASCL4, BTBD11, SPIC, ANO4, CMKLR1, CRY1, ALDH1L2, SLC5A8, FAM71C, UHRF1BP1L, KIAA1033, ISCU, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, HCFC2, IGF1, C12orf42, C12orf75, ARL1, ASCL1, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, NT5DC3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, GOLGA2P5, SCYL2, NA NA NA NA NA NA NA NA NA LTS-022 POLR3B, ANKS1B, CHPT1, RFX4, ACTR6, TDG, HSP90B1, C12orf73, LOC728739, TXNRD1, NUP37, GNPTAB, MTERF2, GLT8D2, SLC41A2, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.419410168522216 167 0.0931485463363902 0.835859604723731 7236 0.596384014427966 2 1 1 -6.74269775044542 LTS-022 NA NA NA NA LTS-022 chr12 108961829 108961952 124 * ISCU NA 0 NA 1.088 1 NA NA NA NA NA LTS-022 chr12 108961953 110353399 1391447 * c(USP30-AS1, MIR4497, ALKBH2, FOXN4, DAO, ISCU, CORO1C, MYO1H, ACACB, MMAB, TMEM119, MVK, GLTP, SSH1, SVOP, TRPV4, SELPLG, UNG, KCTD10, TCHP, USP30, FAM222A, FAM222A-AS1, UBE3B) 0.419141165853146 59 0.120688876009842 1.05782748698594 2540 1.09010594819114 2 1 1 -6.77112463792018 LTS-022 chr12 110353400 110354347 948 * TCHP NA 0 NA 0.509 1 NA NA NA NA NA LTS-022 chr12 110354348 113449001 3094654 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, OAS1, OAS2, OAS3, GPN3, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.396218388189244 88 0.136867414429828 0.913072706150803 4618 0.537580386817936 2 1 1 -6.77427678013807 LTS-022 chr12 113449002 113740467 291466 * c(IQCD, DTX1, CFAP73, OAS2, TPCN1, DDX54, SLC8B1, RASAL1, RITA1) 0.431189050891263 35 0.112845488176004 1.12594232188637 795 0.773267260456343 4 2 2 -6.77435331976376 LTS-022 chr12 113740468 113837350 96883 * c(SDS, PLBD2, SLC8B1) 0 1 NA 1.08074387468751 202 0.611620904044751 3 3 0 -5.76505294741209 LTS-022 chr12 113837351 113909875 72525 * c(SDS, SDSL, LHX5) 0.462 1 NA 1.10214393268873 126 0.52272896184883 3 3 0 -5.76472849828399 LTS-022 chr12 113909876 114259857 349982 * c(LHX5, RBM19) NA 0 NA 0.548 1 NA NA NA NA NA LTS-022 chr12 114259858 123109294 8849437 * c(LINC00173, MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, TMEM233, MSI1, NOS1, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, TESC, ZCCHC8, PRKAB1, NA NA NA NA NA NA NA NA NA LTS-022 WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, CLIP1, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, TBX5, TBX3, HNF1A, MIR620, B3GNT4, C12orf49, RNF34, COQ5, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, KNTC1, MLEC, RBM19, RNF10) 0.216596630050885 158 0.0901246514205683 0.646608607683685 8048 0.400118577408261 1 1 0 -7.61516917496497 LTS-022 NA NA NA NA LTS-022 chr12 123109295 123110715 1421 * KNTC1 NA 0 NA 0.386 1 NA NA NA NA NA LTS-022 chr12 123110716 123200612 89897 * c(HCAR2, HCAR3, KNTC1) 0.293658358927417 3 0.0273191019862171 0.275621246301975 84 0.164099315044075 4 3 1 -9.88500800973401 LTS-022 chr12 123200613 123200706 94 * HCAR3 NA 0 NA 0.746 1 NA NA NA NA NA LTS-022 chr12 123200707 129298819 6098113 * c(LOC100128554, MIR4304, MIR3612, MIR3908, LOC100507091, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, MPHOSPH9, TMED2, SNRNP35, TMEM132B, SLC15A4, BRI3BP, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, LINC00944, LINC00939, FLJ37505, LOC440117, ARL6IP4, SBNO1, PITPNM2, DHX37, DDX55, AACS, UBC, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, NA NA NA NA NA NA NA NA NA LTS-022 TMEM132C, SCARB1, NCOR2) 0.234747355700154 134 0.0885556150609037 0.640435668926449 4537 0.423100926221501 1 1 0 -7.26870797325269 LTS-022 NA NA NA NA LTS-022 chr12 129298820 129569537 270718 * c(TMEM132D, SLC15A4, GLT1D1) 0 1 NA 0.790754266484667 227 0.579265517079362 2 2 0 -5.76673088234511 LTS-022 chr12 129569538 130898900 1329363 * c(LOC100190940, FZD10, TMEM132D, RIMBP2, FZD10-AS1, PIWIL1) 0.0820006078270923 3 0.0812916559883813 0.671354719576688 344 0.272902333704332 2 2 0 -7.55965415615257 LTS-022 chr12 130898901 130898966 66 * RIMBP2 NA 0 NA 1.285 1 NA NA NA NA NA LTS-022 chr12 130898967 133563585 2664619 * c(LOC100130238, ZNF605, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.134300876028415 36 0.0703381627770952 0.870924288439989 3065 0.532440053543125 2 2 0 -6.74185421013935 LTS-022 chr12 133563586 133578129 14544 * character(0) NA 0 NA 2.862 1 NA NA NA NA NA LTS-022 chr12 133578130 133589106 10977 * character(0) NA 0 NA 1.46480115134037 107 0.996615178297581 4 NA NA -5.76441029447512 LTS-022 chr12 133589107 133617660 28554 * character(0) NA 0 NA 0.937 1 NA NA NA NA NA LTS-022 chr12 133617661 133770224 152564 * c(ZNF891, ZNF268, ZNF10, ZNF140) 0.220287995937254 14 0.08651176633433 0.609062405382761 471 0.362473209643506 1 1 0 -6.74247757880174 LTS-022 chr12 133770225 133778702 8478 * ZNF268 NA 0 NA 0.272 1 NA NA NA NA NA LTS-022 chr12 133778703 133781008 2306 * ZNF268 0.2 1 NA 0.239835127621729 51 0.049889414964401 0 0 0 -5.76447347245559 LTS-022 chr12 133781009 133811705 30697 * c(ZNF268, ANHX) 0.167437673678178 3 0.0177857620959388 0.583106981460953 119 0.447665864512609 8 7 1 -7.08039707499281 LTS-022 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.902356384209962 19 0.20110074284281 2 NA NA -5.76446870445046 LTS-022 chr13 19271620 19271712 93 * character(0) 0.439 1 NA 1.877 1 NA NA NA NA NA LTS-022 chr13 19271713 23903055 4631343 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00417, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.349305892689902 59 0.13864692005057 0.87663554077861 1907 0.61537217935253 2 1 1 -6.85278619923616 LTS-022 chr13 23903056 23915765 12710 * SACS NA 0 NA 0.562472863069187 266 0.157721887467633 1 NA NA -5.76481601047317 LTS-022 chr13 23915766 25739665 1823900 * c(MIR2276, SACS-AS1, LINC00327, SPATA13-AS1, PARP4, SPATA13, SACS, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, PABPC3, C1QTNF9B-AS1, TNFRSF19, CENPJ, RNF17, TPTE2P1) 0.353462479916433 31 0.122471818132006 0.762870293064673 1424 0.490896479418735 2 1 1 -6.90629266905246 LTS-022 chr13 25739666 25821603 81938 * c(AMER2, MTMR6) 0.438 1 NA 0.785816328902924 193 0.357962736850725 2 2 0 -5.76659736975878 LTS-022 chr13 25821604 37622782 11801179 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, PDX1, RASL11A, SHISA2, SERTM1, SMAD9, NA NA NA NA NA NA NA NA NA LTS-022 ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.422865305043714 141 0.077420279617479 0.811922183596175 6618 0.455586284740966 2 1 1 -6.81255892760239 LTS-022 NA NA NA NA LTS-022 chr13 37622783 37625581 2799 * SUPT20H NA 0 NA 0.418 1 NA NA NA NA NA LTS-022 chr13 37625582 52364303 14738722 * c(LINC00462, TPT1-AS1, MIR320D1, MIR4305, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, LINC00366, LINC00571, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, LHFP, TRIM13, MRPS31, DLEU1, POSTN, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CSNK1A1L, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, STOML3, ELF1, ESD, ERICH6B, NA NA NA NA NA NA NA NA NA LTS-022 SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, FREM2, KPNA3, KCTD4, NHLRC3, SERP2, LCP1, LINC00547, LINC00548, MIR16-1, PHF11, UFM1, ENOX1, RCBTB1, NUDT15, GPALPP1, SUPT20H, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, TRPC4, NAA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RNASEH2B, DHRS12, RUBCNL, PROSER1, CDADC1, CAB39L, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.394169226472272 151 0.0994072032248173 0.673058422993928 7472 0.430441460459319 2 1 1 -8.58425739794066 LTS-022 NA NA NA NA LTS-022 chr13 52364304 52482526 118223 * c(LINC00282, DHRS12, CCDC70) 0 1 NA 0.742004431400659 79 0.595827260734904 2 2 0 -5.76793635591243 LTS-022 chr13 52482527 70681553 18199027 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, MRPS31P5, OLFM4, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, PCDH17, OR7E156P, LINC00550, NEK5, ALG11, NEK3, PCDH8, PCDH9, VPS36, ATP7B, THSD1, KLHL1, ATXN8OS, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3, UTP14C) 0.3604691787243 33 0.131562355592665 0.659658104293691 1909 0.449920305195607 1 1 0 -8.92805781895075 LTS-022 chr13 70681554 96413093 25731540 * c(MIR3665, RBM26-AS1, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, LINC00410, DACH1, GPR180, DCT, COMMD6, EDNRB, GPC5, DZIP1, DIS3, MYCBP2, TGDS, SLITRK5, FBXL3, LINC00347, LMO7, MIR19B1, MIR17HG, NA NA NA NA NA NA NA NA NA LTS-022 MZT1, POU4F1, NDFIP2, DNAJC3, KLHL1, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, KLF5, BTF3P11, MIR622, LMO7DN, ACOD1, UCHL3, RNF219, BORA, SLITRK6, SCEL, CLDN10, TBC1D4) 0.332928565259149 69 0.152881359703947 0.777398708096651 4385 0.465029255531493 2 1 1 -7.36962861056508 LTS-022 NA NA NA NA LTS-022 chr13 96413094 96511868 98775 * c(UGGT2, DNAJC3) 0.48 1 NA 0.748247629865652 65 0.449772492168583 2 2 0 -5.76894815215821 LTS-022 chr13 96511869 102220179 5708311 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, RNF113B, CLYBL, GPR183, DOCK9, NALCN, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, PCCA, UGGT2, RAP2A, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, ITGBL1, TM9SF2) 0.41770255482645 41 0.0613221501381106 0.780325059762141 2608 0.443082421550252 2 1 1 -6.86003285192715 LTS-022 chr13 102220180 109777738 7557559 * c(BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, LINC00443, TNFSF13B, METTL21EP, LINC00343, EFNB2, METTL21C, ERCC5, FGF14, MYO16, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LIG4, BIVM, ARGLU1, CCDC168, SLC10A2, TPP2, LINC00460, FAM155A, KDELC1, ABHD13, TEX30, ITGBL1) 0.386193344153898 35 0.113154070618246 0.646928959176587 1911 0.330746027625076 2 1 1 -8.84897284252013 LTS-022 chr13 109777739 109779542 1804 * MYO16 NA 0 NA 0.966 1 NA NA NA NA NA LTS-022 chr13 109779543 115047700 5268158 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, UPF3A, SOX1, TFDP1, CARS2, GRTP1, CUL4A, IRS2, PROZ, ARHGEF7, CDC16) 0.431985501316047 119 0.081047771128863 0.869769153950511 3938 0.460460994779737 2 1 1 -6.78852591827869 LTS-022 chr13 115047701 115071323 23623 * UPF3A NA 0 NA 0.926676928819839 39 0.363524249386527 2 NA NA -5.76526651329643 LTS-022 chr13 115071324 115089243 17920 * CHAMP1 NA 0 NA 0.344 1 NA NA NA NA NA LTS-022 chr13 115089244 115092817 3574 * CHAMP1 NA 0 NA 0.488259509580528 73 0.269617714455578 1 NA NA -5.76473591476548 LTS-022 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.411 1 NA 0.582299918238185 5 0.108327281882266 1 1 0 -5.9561349291603 LTS-022 chr14 20201562 20712010 510449 * c(OR4K14, OR4L1, OR11H6, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4Q3, OR4M1, OR4K5, OR4K1, OR4K15) 0.436009401356842 41 0.056057907777496 0.578841109652858 496 0.366458046172983 2 1 1 -7.17773602687161 LTS-022 chr14 20712011 20754345 42335 * character(0) NA 0 NA 5 1 NA NA NA NA NA LTS-022 chr14 20754346 20874597 120252 * c(SNORD126, PARP2, CCNB1IP1, TEP1, RPPH1, TTC5) 0.379240795790061 12 0.176870843992291 1.01893008657861 601 0.51345003639345 3 2 1 -6.7430664262686 LTS-022 chr14 20874598 20875965 1368 * TEP1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-022 chr14 20875966 21460447 584482 * c(EDDM3A, RNASE11, KLHL33, ANG, APEX1, RNASE10, OR6S1, RNASE9, PNP, RNASE12, OSGEP, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, TEP1, TMEM55B) 0.426516685219815 22 0.0637276401666665 0.693847367181626 692 0.376358526764878 2 1 1 -6.87245885837909 LTS-022 chr14 21460448 21460647 200 * METTL17 NA 0 NA 1.1 1 NA NA NA NA NA LTS-022 chr14 21460648 32737865 11277218 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, AP4S1, SUPT16H, DTD2, DHRS1, CMTM5, CMA1, TPPP2, RNASE8, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, HECTD1, HEATR5A, NGDN, LRP10, TINF2, OR10G3, OR10G2, OR4E2, CIDEB, LINC00641, TSSK4, GPR33, NA NA NA NA NA NA NA NA NA LTS-022 CHMP4A, STXBP6, STRN3, SLC39A2, GZMH, GZMB, DHRS4L2, HNRNPC, SNORD8, LINC01551, OR5AU1, ARHGAP5, MIR208A, MMP14, RNASE13, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, ZNF219, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, ARHGEF40, PRKD1, METTL3, LTB4R2, PSMB5, SDR39U1, RPGRIP1, PSME1, PSME2, NDRG2, NYNRIN, HOMEZ, CHD8, RABGGTA, BCL2L2, C14orf93, SALL2, ABHD4, TMEM253, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CBLN3, CDH24, METTL17, IL25, SNORD9, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, RNASE7, ARHGAP5-AS1, RAB2B, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, TOX4, REC8) 0.407613464508109 182 0.122411741464716 0.886250999545023 11428 0.524409165930318 2 1 1 -6.78207888385082 LTS-022 NA NA NA NA LTS-022 chr14 32737866 32902910 165045 * AKAP6 NA 0 NA 0.408138952327801 72 0.169010151004045 1 NA NA -6.03237597695043 LTS-022 chr14 32902911 71109276 38206366 * c(MED6, SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4503, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, EXOC5, CGRRF1, CFL2, FERMT2, WDHD1, BAZ1A, MAP4K5, EGLN3, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, NA NA NA NA NA NA NA NA NA LTS-022 GPHB5, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, TMEM30B, MDGA2, SPTSSA, EIF2S1, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, DAAM1, SAMD4A, FAM179B, SYNE2, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, RALGAPA1, SFTA3, FBXO33, PLEKHG3, NKX2-8, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 GPR137C, FAM177A1, GPX2, ERO1A, HIF1A, FOXA1, ADAM20P1, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, PLEKHD1, MAX, MGAT2, MIA2, MNAT1, LINC00238, TEX21P, MTHFD1, NFKBIA, SIX6, OTX2, PAX9, ATL1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PIGH, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, AP5M1, PRKCH, EAPP, ACTR10, PSMA3, PSMA6, CCDC177, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, TRMT5, FANCM, PYGL, SNX6, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NPAS3, SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SRP54, SSTR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ZFP36L1, STYX, NKX2-1, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, SGPP1, TMX1, SYT16, FSCB, BRMS1L, INSM2, GEMIN2, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, SLC25A21, NEMF, CHURC1, MAPK1IP1L, AKAP6, AKAP5, KIAA0391, SUSD6, KIAA0586, DLGAP5) 0.411398112076153 340 0.114716269350006 0.842877578178939 21140 0.518344644841873 2 1 1 -6.73568241343159 LTS-022 NA NA NA NA LTS-022 chr14 71109277 71138411 29135 * TTC9 0 1 NA 1.11780031219896 19 0.87781436114453 3 3 0 -5.76443138668936 LTS-022 chr14 71138412 73086110 1947699 * c(LOC145474, PCNX1, TTC9, SIPA1L1, SNORD56B, MAP3K9, DPF3, RGS6) 0.319505029443665 21 0.190223189713457 0.860660756294573 1082 0.538820318656197 2 1 1 -6.86564042576802 LTS-022 chr14 73086111 73989983 903873 * c(DCAF4, HEATR4, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, PAPLN) 0.266080759973228 24 0.0698924121443975 1.7429029837609 1082 0.942291626910154 5 4 1 -6.810704238897 LTS-022 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.113 1 NA NA NA NA NA LTS-022 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.299030366373421 47 0.338333872728859 0 NA NA -5.76926940831921 LTS-022 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.897 1 NA NA NA NA NA LTS-022 chr14 74035793 74042343 6551 * c(ACOT2, ACOT1) 0.236322757140557 2 0.0770746391493337 0.757886355955138 47 0.88892523949211 5 4 1 -6.73857928880656 LTS-022 chr14 74042344 74058319 15976 * c(ACOT2, ACOT1) NA 0 NA 2.204 1 NA NA NA NA NA LTS-022 chr14 74058320 93199080 19140761 * c(SNORA11B, MIR1260A, MIR4505, MIR4709, DIO2-AS1, LINC00911, FBLN5, BATF, NPC2, AHSA1, TMED10, PTPN21, FOXN3, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, TC2N, SLC24A4, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, VSX2, NA NA NA NA NA NA NA NA NA LTS-022 FOXN3-AS1, LINC00642, LTBP2, ATXN3, ALDH6A1, CCDC88C, NDUFB1, COQ6, FCF1, PGF, CPSF2, KCNK10, NRDE2, VRTN, FLVCR2, GPATCH2L, PPP4R3A, TDP1, SPATA7, YLPM1, LGMN, KCNK13, PSMC1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, SEL1L, ACOT6, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, BBOF1, GPR68, SLIRP, DNAL1, RPS6KL1, GPR65, STON2, CIPC, ALKBH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 EIF2B2, EFCAB11, ELMSAN1, LIN52, NEK9, PNMA1, RPS6KA5, TRIP11, NRXN3, SPTLC2, ENTPD5, ACYP1, AREL1) 0.278351019657359 228 0.0814932835700107 1.55414898644782 12381 0.932432491403366 4 3 1 -6.80024240084563 LTS-022 NA NA NA NA LTS-022 chr14 93199081 93389403 190323 * c(LGMN, GOLGA5) 0.346 1 NA 1.45984897245689 97 0.937269701954049 4 4 0 -5.76441043622108 LTS-022 chr14 93389404 98435891 5046488 * c(LOC100129345, MIR3173, TUNAR, PAPOLA, CHGA, SERPINA3, AK7, IFI27L1, GSC, SERPINA12, PRIMA1, SYNE3, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, SNHG10, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, DICER1-AS1, SERPINA5, SERPINA10, GLRX5, GSKIP, ASB2, SERPINA1, SERPINA4, ATG2B, UBR7, BTBD7, C14orf132, DDX24, UNC79, PPP4R4, BDKRB1, BDKRB2, MOAP1, VRK1, OTUB2, LINC00341, CLMN, NA NA NA NA NA NA NA NA NA LTS-022 TCL1A, IFI27L2, GON7, SERPINA6, FAM181A, TCL1B) 0.253622988720664 81 0.0991478989399046 1.54248812125261 4404 0.879275170303925 5 4 1 -6.81203204972707 LTS-022 NA NA NA NA LTS-022 chr14 98435892 98444227 8336 * LINC01550 NA 0 NA 4.1 1 NA NA NA NA NA LTS-022 chr14 98444228 101406011 2961784 * c(MIR665, MIR2392, MIR5698, CYP46A1, SLC25A29, DEGS2, EML1, C14orf177, SLC25A47, LINC00523, CCDC85C, LINC01550, RTL1, MIR127, MIR136, MIR337, MIR345, EVL, MEG3, MIR433, MIR431, MIR493, MIR432, BEGAIN, BCL11B, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, MIR770, MEG8, WDR25, SETD3, HHIPL1, DLK1, CCNK) 0.237093601345301 42 0.0813132805481118 1.75248208685713 2100 1.48738274358216 5 4 1 -6.73429158368547 LTS-022 chr14 101406012 101407445 1434 * character(0) NA 0 NA 1.051 1 NA NA NA NA NA LTS-022 chr14 101407446 101459679 52234 * c(SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31) NA 0 NA 1.07332387036509 167 0.428041347883777 3 NA NA -5.76527738414458 LTS-022 chr14 101459680 101488370 28691 * character(0) NA 0 NA 2.308 1 NA NA NA NA NA LTS-022 chr14 101488371 106385412 4897042 * c(MIR300, MIR541, MIR543, MIR889, ZBTB42, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, ANKRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00239, LINC00637, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, HSP90AA1, JAG2, ASPG, KLC1, TMEM179, C14orf180, NA NA NA NA NA NA NA NA NA LTS-022 MIR134, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, CINP, CDCA4, PPP2R5C, ZNF839, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR494, MIR495, MIR496, MOK, MIR487A, INF2, RD3L, TEX22, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, XRCC3, MIR758, MIR668, ZFYVE21, TMEM121, AMN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 APOPT1, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, FAM30A, TECPR2) 0.248958047344474 182 0.0781012871972435 1.8017914402071 7405 1.12626679846178 5 4 1 -6.74071061529204 LTS-022 NA NA NA NA LTS-022 chr14 106385413 106386954 1542 * FAM30A NA 0 NA 1.133 1 NA NA NA NA NA LTS-022 chr14 106386955 107283157 896203 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.239426758983317 25 0.125777541715522 1.19774473986459 384 1.24093243808827 5 4 1 -6.78479074852284 LTS-022 chr15 20169987 20446043 276057 * character(0) 0.484 1 NA 0.640251824100641 23 0.453357570750199 1 1 0 -5.78651051935641 LTS-022 chr15 20446044 20875072 429029 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.30410474253167 10 0.0800639327870754 1.17476934553016 90 2.3826763545144 4 3 1 -6.75231212683331 LTS-022 chr15 20875073 20876434 1362 * NBEAP1 NA 0 NA 0.401 1 NA NA NA NA NA LTS-022 chr15 20876435 22483192 1606758 * c(POTEB, OR4N4, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, LOC646214, CXADRP2, LOC727924) 0.413568989947656 19 0.0686294823523624 0.400466878856229 178 0.437844244666347 0 0 0 -7.8683514998599 LTS-022 chr15 22483193 22489860 6668 * character(0) NA 0 NA 0.846 1 NA NA NA NA NA LTS-022 chr15 22489861 23686062 1196202 * c(HERC2P7, GOLGA8DP, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, REREP3, GOLGA8S, NIPA2) 0.422598205390139 24 0.0642165155514157 0.987047015786899 696 0.57652360153547 2 1 1 -6.80731676663839 LTS-022 chr15 23686063 23686113 51 * character(0) 0.235 1 NA 2.132 1 NA NA NA NA NA LTS-022 chr15 23686114 24921347 1235234 * c(MIR4508, NPAP1, NDN, MAGEL2, MKRN3, PWRN1, PWRN2) NA 0 NA 0.919902242383926 246 0.554059113971916 2 NA NA -5.78061046385132 LTS-022 chr15 24921348 25230343 308996 * c(NPAP1, PWARSN, SNRPN, PWAR5, SNURF) 0.225441432180388 2 0.0898025612106915 0.570749257199629 220 0.377129267647576 1 1 0 -6.73930421116954 LTS-022 chr15 25230344 25496184 265841 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-022 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-24, SNORD115-27, SNORD115-28, PWAR1, SNORD109B, SNORD115-1, PWAR4, IPW, SNRPN, SNORD116-19, PWAR5, SNURF) 0.163241327947098 3 0.164693655008321 0.378988293212181 281 0.217341993691181 1 1 0 -7.2067451228704 LTS-022 NA NA NA NA LTS-022 chr15 25496185 31330063 5833879 * c(SNORD115-48, SNORD115-45, SNORD115-47, LOC100128714, LOC100288637, LOC100289656, MIR4715, FAN1, FAM189A1, GABRA5, GABRB3, GABRG3, DKFZP434L187, APBA2, SNORD109B, HERC2P10, TRPM1, HERC2P9, WHAMMP2, OCA2, LINC00929, MTMR10, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, UBE3A, HERC2, CHRFAM7A, ARHGAP11B) 0.186411264568849 40 0.102380086204701 0.603425403618785 2288 0.419672925040083 1 1 0 -7.0120044565707 LTS-022 chr15 31330064 31330230 167 * TRPM1 NA 0 NA 1.289 1 NA NA NA NA NA LTS-022 chr15 31330231 31942063 611833 * c(OTUD7A, LOC283710, MIR211, TRPM1, KLF13) 0.206837677374624 10 0.0878800318616237 0.794770452373001 383 0.578350886142497 1 1 0 -6.9010022757279 LTS-022 chr15 31942064 31947326 5263 * OTUD7A NA 0 NA 0.354 1 NA NA NA NA NA LTS-022 chr15 31947327 32930279 982953 * c(WHAMMP1, LOC100996255, CHRNA7, OTUD7A, GOLGA8O, ARHGAP11A) NA 0 NA 0.434359089411491 230 0.25111543966919 1 NA NA -6.19348811811689 LTS-022 chr15 32930280 40911274 7980995 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, RASGRP1, GPR176, CHST14, CHRM5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, FSIP1, BAHD1, GOLGA8A, LPCAT4, NUTM1, GREM1, RPUSD2, FAM98B, FMN1, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, MEIS2, GOLGA8B, EIF2AK4, EMC4, PLCB2, ZNF770, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, RYR3, SCG5, C15orf56, PHGR1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, NA NA NA NA NA NA NA NA NA LTS-022 KATNBL1, C15orf41, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6) 0.166147820778092 122 0.0849791210998127 0.661361693430925 5805 0.441414495969324 1 1 0 -7.79639677130535 LTS-022 NA NA NA NA LTS-022 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.355 1 NA NA NA NA NA LTS-022 chr15 40912850 40916428 3579 * KNL1 NA 0 NA 0.265579879898737 76 0.101666762151235 0 NA NA -5.76704423331845 LTS-022 chr15 40916429 41829302 912874 * c(RAD51-AS1, CHP1, OIP5, EXD1, RHOV, RTF1, RPAP1, GCHFR, ITPKA, LTK, NDUFAF1, NUSAP1, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, OIP5-AS1, CHAC1, ZFYVE19) 0.162696248263318 19 0.0660124921723685 0.74563705632215 1944 0.389672125951617 2 2 0 -6.8587835909844 LTS-022 chr15 41829303 41829351 49 * RPAP1 0.173 1 NA 2.53 1 NA NA NA NA NA LTS-022 chr15 41829352 41863181 33830 * c(RPAP1, TYRO3) 0.464 1 NA 1.25574207644839 67 0.385612073448832 3 3 0 -5.76541382540864 LTS-022 chr15 41863182 42976559 1113378 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, PLA2G4D, EHD4, SPTBN5, HAUS2, STARD9, ZNF106, MIR626, MIR627, TYRO3, CAPN3, JMJD7-PLA2G4B, SNAP23) 0.394290915859415 42 0.103916633253135 1.11612845296782 2737 0.571592769860435 3 2 1 -6.79352219924427 LTS-022 chr15 42976560 42976628 69 * STARD9 NA 0 NA 0.844 1 NA NA NA NA NA LTS-022 chr15 42976629 42985728 9100 * STARD9 0.422655271579185 2 0.0572756492761104 0.673951539884875 196 0.186653185391931 2 1 1 -6.77227627692247 LTS-022 chr15 42985729 43852785 867057 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, PPIP5K1, LCMT2) 0.381454440600436 45 0.158022604187956 1.04620389610843 1938 0.578815220304729 3 2 1 -6.75689186808419 LTS-022 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.072 1 NA NA NA NA NA LTS-022 chr15 43873177 43892459 19283 * c(CKMT1B, STRC, PPIP5K1) 0.387 1 NA 0.426699320490781 60 0.325928144918044 1 1 0 -5.77067011932267 LTS-022 chr15 43892460 43892735 276 * STRC NA 0 NA 1.548 1 NA NA NA NA NA LTS-022 chr15 43892736 44029073 136338 * c(CATSPER2, STRC, CATSPER2P1, CKMT1A) 0.407057136159945 15 0.130675096909782 0.824894278571279 409 0.871543238647437 2 1 1 -6.7333345170189 LTS-022 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 1.251 1 NA NA NA NA NA LTS-022 chr15 44029088 45361255 1332168 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, TERB2, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.318894215497885 22 0.190808736765312 0.998225837933156 1674 0.608620070575946 3 2 1 -6.80735719513147 LTS-022 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.158 1 NA NA NA NA NA LTS-022 chr15 45365581 45384926 19346 * c(DUOX2, SORD) NA 0 NA 0.333532012813629 39 0.380397544022008 0 NA NA -5.77369368359733 LTS-022 chr15 45384927 45385012 86 * DUOX2 NA 0 NA 1.167 1 NA NA NA NA NA LTS-022 chr15 45385013 47873672 2488660 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, DUOXA2, DUOX2, DUOX1, SQRDL, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.403370461758412 19 0.105731039111412 1.06996316565656 1219 0.716203115215436 3 2 1 -6.84078515040335 LTS-022 chr15 47873673 50518357 2644685 * c(NDUFAF4P1, MIR4716, SLC27A2, DUT, FAM227B, FBN1, FGF7, CEP152, EID1, GALK2, SLC24A5, SHC4, CTXN2, MYEF2, DTWD1, SLC12A1, ATP8B4, SEMA6D, COPS2, SECISBP2L) 0.33490475228706 21 0.178581953975519 0.840344288056135 2646 0.495878501256544 2 1 1 -6.83665022960185 LTS-022 chr15 50518358 50519175 818 * SLC27A2 NA 0 NA 1.347 1 NA NA NA NA NA LTS-022 chr15 50519176 51296407 777232 * c(GABPB1-AS1, DCAF13P3, MIR4712, SLC27A2, AP4E1, GABPB1, HDC, USP50, TRPM7, FLJ10038, SPPL2A, USP8) 0.44555907431593 14 0.0546280630695 1.01805398058058 926 0.540379905974859 2 1 1 -7.03566036654036 LTS-022 chr15 51296408 51349386 52979 * c(AP4E1, TNFAIP8L3) 0.037 1 NA 1.43274799175753 39 0.87879184026453 4 4 0 -5.76442233345371 LTS-022 chr15 51349387 51500358 150972 * c(CYP19A1, TNFAIP8L3) 0.366 1 NA 1.28979617082947 41 0.4885611078438 3 3 0 -5.76921047619818 LTS-022 chr15 51500359 56197608 4697250 * c(LOC100129973, BCL2L10, MIR1266, DYX1C1-CCPG1, MIR4713, GNB5, ARPP19, LEO1, C15orf65, CYP19A1, DYX1C1, DMXL2, LYSMD2, WDR72, PYGO1, PRTG, SCG3, TMOD3, TMOD2, ONECUT1, GLDN, UNC13C, MYO5A, NEDD4, RSL24D1, MYO5C, MAPK6, FAM214A, RAB27A, MIR628, CCPG1, PIGB) 0.22843966534592 56 0.0765019289290808 0.53565056391431 3550 0.333741146170449 1 1 0 -6.74568104146604 LTS-022 chr15 56197609 56383454 185846 * c(NEDD4, RFX7) 0.105 1 NA 0.29403158962366 123 0.227932077866379 0 0 0 -5.86149321131101 LTS-022 chr15 56383455 60297923 3914469 * c(MIR2116, MYZAP, ADAM10, FAM81A, GCOM1, LOC145783, FOXB1, LINC00926, GTF2A2, AQP9, TEX9, LIPC, MYO1E, FAM63B, RNF111, ZNF280D, MNS1, RFX7, BNIP2, HSP90AB4P, TCF12, SLTM, POLR2M, CGNL1, ALDH1A2, CCNB2, GCNT3, LDHAL6B) 0.205624180719506 33 0.0857578183554765 0.53276847290225 2770 0.30248111215764 1 1 0 -6.75623652648577 LTS-022 chr15 60297924 75342362 15044439 * c(NR2E3, USP3-AS1, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, IQCH-AS1, MIR4513, MIR4511, SCAMP2, PDCD7, FEM1B, DENND4A, SNAPC5, CORO2B, ARID3B, CLPX, LACTB, DIS3L, CLK3, SENP8, MTFMT, SLC51B, HIGD2B, CSK, C2CD4A, DRAIC, C15orf61, CYP1A1, CYP1A2, CYP11A1, TBC1D21, SCAMP5, CT62, GRAMD2, MGC15885, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, ARIH1, ULK3, GLCE, NPTN, FOXB1, EWSAT1, REC114, NA NA NA NA NA NA NA NA NA LTS-022 LOC283731, FBXL22, ANXA2, HEXA, TMEM202, GOLGA6A, RBPMS2, ANKDD1A, ISLR, C2CD4B, C15orf59, KBTBD13, UBAP1L, SKOR1, LOXL1, MIR190A, SMAD3, SMAD6, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, PKM, PML, CSNK1G1, PPIB, VPS13C, LRRC49, PAQR5, DPP8, RPP25, PARP16, TIPIN, CLN6, ZWILCH, UACA, LARP6, GOLGA6B, MAP2K1, MAP2K5, THAP10, PARP6, FAM219B, ISLR2, IGDCC4, BBS4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, PPCDC, CELF6, RORA, RPL4, RPLP1, STRA6, IQCH, SNX1, SCARNA14, MIR629, MIR630, TLE3, TPM1, LOC729739, CA12, NOX5, ICE2, AAGAB, LMAN1L, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, PLEKHO2, CD276, ANP32A, VWA9, ADPGK, APH1B, TLN2, FAM96A, MEGF11, SEMA7A, CILP, UBL7, PIAS1, RAB11A, HERC1, CALML4, SLC24A1, TRIP4, COX5A, STOML1, KIF23, IGDCC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 KIAA0101, USP3) 0.205853976988412 220 0.088191899429302 0.602280781882523 14165 0.345357345685362 1 1 0 -7.48009706925857 LTS-022 NA NA NA NA LTS-022 chr15 75342363 75645886 303524 * c(COMMD4, C15orf39, PPCDC, GOLGA6C, GOLGA6D, NEIL1) 0 1 NA 0.659927856172851 219 0.364031827311452 1 1 0 -5.8168376172745 LTS-022 chr15 75645887 75913449 267563 * c(SNUPN, SIN3A, MAN2C1, PTPN9, MIR631, NEIL1) NA 0 NA 0.658410187177989 499 0.407456775937461 1 NA NA -5.80053746326749 LTS-022 chr15 75913450 75916978 3529 * SNUPN NA 0 NA 2.931 1 NA NA NA NA NA LTS-022 chr15 75916979 90170670 14253692 * c(DNM1P35, NA, UBE2Q2P2, MIR1276, MIR1179, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR3529, MIR4515, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, MORF4L1, ABHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, C15orf40, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, HAPLN3, NRG4, LINC00052, CSPG4, CTSH, CFAP161, ODF3L1, ACAN, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, MIR9-3HG, NA NA NA NA NA NA NA NA NA LTS-022 SNX33, FBXO22, MRPL46, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, LOC338963, IDH3A, TMC3, IL16, IREB2, ISG20, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MIR7-2, MIR9-3, MFGE8, GOLGA6L9, DNM1P41, LOC440300, NMB, NTRK3, SCAPER, HDGFRP3, RHCG, PDE8A, BTBD1, TM6SF1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, FANCI, IMP3, DNAJA4, PSMA4, ADAMTSL3, CEMIP, ALPK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ABHD17C, RASGRF1, MESDC1, RCN2, BCL2A1, RLBP1, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, ISL2, EFTUD1P1, MRPS11, SCARNA15, FBXO22-AS1, MIR549A, AGBL1-AS1, ANKRD34C-AS1, TYRO3P, EFL1, PEAK1, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, LINGO1, WDR73, TICRR, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, HOMER2, ZNF592, ARNT2) 0.105439126479732 248 0.0536275470664287 1.08808516567553 10691 0.673687326523181 3 3 0 -6.79567298057498 LTS-022 NA NA NA NA LTS-022 chr15 90170671 91509592 1338922 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, MESP2, FES, GABARAPL3, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, MAN2A2, TTLL13P, FURIN, NGRN, PLIN1, MESP1, UNC45A, WDR93, BLM, CRTC3, PEX11A, IQGAP1, TICRR, PRC1, RCCD1) 0.102953506320677 86 0.0421477386599211 1.33021185423403 2691 0.789985788714501 3 3 0 -6.75943832518242 LTS-022 chr15 91509593 91509619 27 * c(PRC1-AS1, PRC1) NA 0 NA 0.618 1 NA NA NA NA NA LTS-022 chr15 91509620 102516492 11006873 * c(FAM138E, LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, VPS33B, OR4F4, SLCO3A1, FAM169B, IGF1R, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, PCSK6, LINS1, MCTP2, SELENOS, RGMA, NR2F2-AS1, TTC23, SNRPA1, NA NA NA NA NA NA NA NA NA LTS-022 NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PRC1, ARRDC4, LINC00923, SV2B) 0.110536928007007 151 0.0528869083730813 1.10136189438443 4977 0.802140768476903 3 3 0 -6.76505539974974 LTS-022 NA NA NA NA LTS-022 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.736 1 NA NA NA NA NA LTS-022 chr16 81704 81779 76 * character(0) 0.338 1 NA 3.498 1 NA NA NA NA NA LTS-022 chr16 81780 2160503 2078724 * c(LOC100134368, MIR1225, MIR3177, MIR3176, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, WDR90, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, DECR2, GFER, SNORA64, NPW, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, POLR3K, MSRB1, GNG13, NA NA NA NA NA NA NA NA NA LTS-022 PKD1, LUC7L, SNORA10, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, METRN, SNRNP25, TMEM204, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RAB11FIP3, IFT140, TELO2) 0.451805012569074 230 0.0569276692088238 0.957663431037589 7083 0.526884023768511 2 1 1 -7.11239297966973 LTS-022 NA NA NA NA LTS-022 chr16 2160504 2226863 66360 * c(MIR3180-5, MIR4516, RAB26, SNORD60, PKD1, TRAF7) 0 1 NA 0.883244817100505 159 0.514022997992086 2 2 0 -5.76466792195049 LTS-022 chr16 2226864 2650483 423620 * c(MIR940, MIR3178, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, BRICD5, PGP, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CASKIN1, MLST8, ABCA17P, CEMP1, C16orf59, TRAF7, CCNF) 0.375882880231599 15 0.123747130798869 1.02669727757932 1212 0.497212580679022 3 2 1 -6.75459607889722 LTS-022 chr16 2650484 2650491 8 * PDPK1 NA 0 NA 0.357 1 NA NA NA NA NA LTS-022 chr16 2650492 2732840 82349 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.348172226644906 147 0.280045570861938 0 NA NA -5.8556284057986 LTS-022 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 1.772 1 NA NA NA NA NA LTS-022 chr16 2747831 2758805 10975 * KCTD5 0 2 0 1.1408488244476 66 0.821565395490584 0 0 0 -Inf LTS-022 chr16 2758806 2809508 50703 * c(SRRM2-AS1, SRRM2, KCTD5, PRSS27) 0.489 1 NA 1.18822180517414 87 0.61970432477676 3 3 0 -5.76448376379872 LTS-022 chr16 2809509 3198475 388967 * c(LOC100128770, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, HCFC1R1, PRSS22, MMP25, TCEB2, ZNF205, ZNF213, THOC6, KREMEN2, ZNF205-AS1, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, IL32) 0.431767460624161 33 0.0446861742227578 1.01800462821864 1261 0.599126351942715 2 1 1 -6.89900066726353 LTS-022 chr16 3198476 3198858 383 * character(0) NA 0 NA 0.526 1 NA NA NA NA NA LTS-022 chr16 3198859 3544770 345912 * c(MTRNR2L4, ZNF263, ZNF597, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, C16orf90, ZNF75A, ZNF174, ZNF200, NAA60, TIGD7) 0.346438918525459 6 0.235180498057698 0.835450543800965 736 0.458602660004697 2 1 1 -6.77619132675284 LTS-022 chr16 3544771 5075226 1530456 * c(LINC01569, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf71, DNASE1, NLRC3, CLUAP1, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, PPL, NMRAL1, SRL, C16orf90, TFAP4, CORO7, ROGDI, NUDT16L1, SLX4, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.454154387908662 79 0.0363880818735238 1.11793718271878 2839 0.605090594838561 4 2 2 -7.6914587771604 LTS-022 chr16 5075227 5075248 22 * NAGPA 0.369 1 NA 2.67994598071857 3 3.49698741776404 8 8 0 -5.76441013465203 LTS-022 chr16 5075249 19896518 14821270 * c(MIR365A, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, NAGPA-AS1, MIR4718, COQ7, RMI2, NTAN1, FOPNL, IQCK, TEKT5, C16orf89, ITPRIPL2, ABAT, EEF2KMT, EMP2, ERCC4, PDXDC1, SMG1, ARL6IP1, CLEC16A, NOMO1, CARHSP1, MPV17L, TMEM186, RSL1D1, NOMO2, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, PKD1P1, ABCC6, BCAR4, KNOP1, NOMO3, CIITA, ABCC1, MYH11, NUBP1, PARN, TXNDC11, NAGPA, BFAR, GDE1, GPRC5B, SYT17, PMM2, NA NA NA NA NA NA NA NA NA LTS-022 RRN3, RBFOX1, NDE1, CPPED1, ALG1, PRM1, PRM2, C16orf62, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, RPS15A, XYLT1, NPIPA3, ABCC6P1, TNP2, CLEC19A, SHISA9, ABCC6P2, TVP23A, USP7, METTL22, TMC5, TMC7, ATF7IP2, SNN, PLA2G10, SOCS1, C16orf45, SNX29, NPIPA1, LITAF, KIAA0430, CCP110) 0.38697712430515 182 0.120547164023771 1.21124890524193 6977 0.75340110851123 3 2 1 -6.79768499027517 LTS-022 NA NA NA NA LTS-022 chr16 19896519 20818418 921900 * c(ERI2, ACSM1, ACSM2A, GPR139, PDILT, GP2, ACSM2B, GPRC5B, ACSM5, THUMPD1, ACSM3, UMOD, LOC81691) 0.398271696682806 22 0.111423104538997 0.873539511006773 835 0.524186122641736 2 1 1 -6.74106942208464 LTS-022 chr16 20818419 20824489 6071 * c(ERI2, LOC81691) NA 0 NA 1.236 1 NA NA NA NA NA LTS-022 chr16 20824490 23585468 2760979 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, SNX29P1, IGSF6, CDR2, ERI2, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, GGA2, NPIPB3, PDZD9, ANKS4B, EEF2K, SLC7A5P2, CRYM-AS1, METTL9, DNAH3, POLR3E, UBFD1, TMEM159, LYRM1, USP31, SCNN1B, SCNN1G, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, LOC81691, COG7, HS3ST2) 0.370901507997089 50 0.13723041996316 1.16703413869716 2948 0.652799832241218 3 2 1 -6.73632341390151 LTS-022 chr16 23585469 23699910 114442 * c(NDUFAB1, PLK1, UBFD1, PALB2, DCTN5) 0 1 NA 1.05627886936217 291 0.654332895798096 3 3 0 -5.76562985323989 LTS-022 chr16 23699911 24231696 531786 * c(ERN2, PLK1, PRKCB, CHP2) 0.15870952538582 9 0.21955738303333 1.19331724678819 431 0.753567791232018 3 3 0 -6.7715529491565 LTS-022 chr16 24231697 24267309 35613 * c(CACNG3, PRKCB) 0.443 1 NA 0.829058614522282 15 0.236584586705615 2 2 0 -5.76459405499753 LTS-022 chr16 24267310 28608421 4341112 * c(LCMT1-AS2, CACNG3, SGF29, SLC5A11, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, APOBR, RBBP6, SULT1A2, KDM8, HS3ST4) 0.409979294718681 40 0.108561869397959 1.07910858613012 2357 0.566309921131184 3 2 1 -6.88432609906942 LTS-022 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.215 1 NA NA NA NA NA LTS-022 chr16 28616944 28621392 4449 * SULT1A1 NA 0 NA 0.295569837017403 42 0.138497629928945 0 NA NA -5.77111406124995 LTS-022 chr16 28621393 30198597 1577205 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, CDIPT, CORO1A, PRRT2, ATXN2L, TMEM219, C16orf92, ALDOA, QPRT, KCTD13, ASPHD1, SH2B1, SEZ6L2, LAT, C16orf54, INO80E, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, ATP2A1, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A1, SULT1A3, TBX6, TUFM, GDPD3, PAGR1, RABEP2, SLC7A5P1, YPEL3, FAM57B, SPNS1, DOC2A, HIRIP3, NFATC2IP, CD19, TAOK2, NA NA NA NA NA NA NA NA NA LTS-022 MVP) 0.356299829585628 9 0.206017259255411 1.04781909019088 2600 0.637251790025959 3 2 1 -6.75451643239256 LTS-022 NA NA NA NA LTS-022 chr16 30198598 30198688 91 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.493 1 NA NA NA NA NA LTS-022 chr16 30198689 30217325 18637 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.405336980179524 56 0.2979305745853 1 NA NA -5.77507581592426 LTS-022 chr16 30217326 30566747 349422 * c(MIR4518, CD2BP2, SEPT1, ZNF48, SEPHS2, TBC1D10B, MYLPF, ITGAL, SMG1P2, ZNF771, SMG1P5, LOC613037, LOC613038, ZNF747, DCTPP1, ZNF768, ZNF764) 0.442496172053282 18 0.0448904621804147 1.01080178447237 738 0.445993635611744 2 1 1 -7.07172900861435 LTS-022 chr16 30566748 30999955 433208 * c(MIR762, MIR4519, TMEM265, SRCAP, ZNF689, ZNF785, ZNF688, CTF1, ZNF629, FBXL19-AS1, PHKG2, FBXL19, FBRS, SNORA30, LOC730183, PRR14, HSD3B7, CCDC189, ZNF764, BCL7C, ORAI3, SETD1A, RNF40) 0 1 NA 1.01453866707514 1567 0.53605630631918 3 3 0 -5.77908690597635 LTS-022 chr16 30999956 31580549 580594 * c(PYCARD-AS1, BCKDK, STX1B, COX6A2, PRSS36, FUS, PYDC1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAM, ITGAX, YBX3P1, TRIM72, AHSP, PRSS8, C16orf58, SLC5A2, STX4, TGFB1I1, VKORC1, ZNF668, ARMC5, HSD3B7, KAT8, ZNF646) 0.331280355061501 16 0.204766604943287 1.01676665697705 1769 0.648375640862473 3 2 1 -6.7592468428268 LTS-022 chr16 31580550 31580678 129 * YBX3P1 NA 0 NA 0.409 1 NA NA NA NA NA LTS-022 chr16 31580679 31804798 224120 * c(CLUHP3, ZNF720, YBX3P1) 0.432580865265448 2 0.0480832611206852 0.484517823692364 167 0.257899051259687 2 1 1 -7.44057857654677 LTS-022 chr16 31804799 31805012 214 * character(0) NA 0 NA 1.059 1 NA NA NA NA NA LTS-022 chr16 31805013 33816335 2011323 * c(ZNF267, SLC6A10P, LOC390705, NA, TP53TG3D) 0.295337946999334 15 0.122640512222084 1.0726187619399 290 0.869841342598408 4 3 1 -6.88035388601087 LTS-022 chr16 33816336 33961104 144769 * LINC00273 NA 0 NA 3.041 1 NA NA NA NA NA LTS-022 chr16 33961105 33965542 4438 * LINC00273 0.317704243795626 69 0.082518268921993 2.12325331883256 106 0.878432732483628 13 9 4 -6.73464353896042 LTS-022 chr16 33965543 34267241 301699 * character(0) 0.177349241110111 3 0.156621624730857 0.82262453141342 33 0.853669686536966 2 2 0 -6.76632360437227 LTS-022 chr16 34267242 34682380 415139 * c(LINC01566, UBE2MP1) NA 0 NA 0.774344428702433 99 0.470519422448925 2 NA NA -5.77355487433205 LTS-022 chr16 46508169 46602819 94651 * ANKRD26P1 0.498 1 NA 0.890315564578474 97 0.439083248384663 2 2 0 -5.76512700188656 LTS-022 chr16 46602820 48595396 1992577 * c(LOC100507577, MIR548AE2, DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SIAH1, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, MYLK3, ABCC12, N4BP1) 0.217732763721101 6 0.24588161107872 0.929679037839782 1678 0.528750161708689 2 2 0 -6.8281322107113 LTS-022 chr16 48595397 55735912 7140516 * c(LINC00919, IRX5, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, CNEP1R1, TOX3, BRD7, C16orf97, MMP2, LPCAT2, HEATR3, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SLC6A2, FTO, IRX6, IRX3, CHD9, CAPNS2, NKD1, CBLN1, N4BP1) 0.223579251457345 53 0.065963980583328 0.599376907151809 2944 0.351238980818739 1 1 0 -7.06387083652021 LTS-022 chr16 55735913 55736527 615 * SLC6A2 0.4 1 NA 0.624262394501145 9 0.133478566735554 1 1 0 -5.7648189647872 LTS-022 chr16 55736528 55862901 126374 * c(CES1, CES1P2, CES1P1, SLC6A2) 0.464273071893707 9 0.0521291132136779 0.629609756608691 97 0.343493593531598 2 1 1 -7.3858760828726 LTS-022 chr16 55862902 55880480 17579 * c(CES1, CES5A) 0.25 1 NA 0.656642073046429 17 0.280131442362331 1 1 0 -5.76931865778671 LTS-022 chr16 55880481 70608038 14727558 * c(CDH3, SNORD111B, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00920, SMG1P7, LOC100506083, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, CETP, NFAT5, NUDT21, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, SF3B3, CES3, ARL2BP, EDC4, PLA2G15, NA NA NA NA NA NA NA NA NA LTS-022 COG4, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR138-2, MIR140, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TPPP3, POLR2C, PRMT7, DUS2, CHTF8, PDPR, SLC38A7, OGFOD1, LRRC36, DDX19A, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, MT1IP, APOOP5, GINS3, ST3GAL2, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, COG8, MT4, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.20371494910482 148 0.086360133034171 0.618078904419331 12960 0.94611856885767 1 1 0 -6.9162586053871 LTS-022 NA NA NA NA LTS-022 chr16 70608039 70608338 300 * SF3B3 NA 0 NA 1.922 1 NA NA NA NA NA LTS-022 chr16 70608339 70796515 188177 * c(VAC14-AS1, IL34, SF3B3, VAC14, MTSS1L) 0.240545158728727 4 0.0346698716467194 0.864918358124922 208 0.444412883727052 5 4 1 -7.0096840359396 LTS-022 chr16 70796516 70884524 88009 * c(VAC14-AS1, HYDIN, VAC14) 0.33 1 NA 0.736039721493604 141 0.321368693533431 2 2 0 -5.774551671452 LTS-022 chr16 70884525 71166930 282406 * HYDIN 0.396156267595705 81 0.0919781542769669 0.825854208285958 538 0.572683989112296 2 1 1 -6.74615618419562 LTS-022 chr16 71166931 71167220 290 * HYDIN 0.357010211974527 2 0.0410121933088197 0.441444809362858 8 0.250590124933697 3 2 1 -6.74346164092801 LTS-022 chr16 71167221 71218926 51706 * HYDIN 0.074 1 NA 0.678638233071681 31 0.24675881742806 2 2 0 -5.78944975470237 LTS-022 chr16 71218927 82203797 10984871 * c(LOC100129617, SYCE1L, SNORA70D, LINC01568, MIR4720, MIR4719, CLEC3A, CHST4, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ATMIN, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, HP, HPR, HSD17B2, ATXN1L, PKD1L3, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, NA NA NA NA NA NA NA NA NA LTS-022 CENPN, CMC2, PSMD7, VAT1L, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, ZNRF1, CNTNAP4, MARVELD3, SDR42E1, BCAR1, DHX38, IST1) 0.206446163870355 160 0.0906211271130815 0.653536527858109 5948 0.406843045259462 1 1 0 -7.88308217759842 LTS-022 NA NA NA NA LTS-022 chr16 82203798 83065664 861867 * c(CDH13, MPHOSPH6) 0.476 1 NA 0.820388721716826 39 0.490925326412643 2 2 0 -5.76667041383383 LTS-022 chr16 83065665 83205308 139644 * CDH13 0.467 1 NA 0.627897460536834 22 0.225325051398815 1 1 0 -5.7995841865532 LTS-022 chr16 83205309 83214384 9076 * CDH13 NA 0 NA 1.227 1 NA NA NA NA NA LTS-022 chr16 83214385 90111279 6896895 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4722, MIR5093, MIR5189, CDH13, CDH15, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, NA NA NA NA NA NA NA NA NA LTS-022 SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ATP2C2) 0.42587253625158 257 0.100566330444469 1.03452491186102 7306 0.8280163004382 2 1 1 -6.97969912949121 LTS-022 NA NA NA NA LTS-022 chr16 90111280 90161242 49963 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.667044038178129 95 0.396698122284394 1 NA NA -5.7725536507356 LTS-022 chr17 6004 6115 112 * DOC2B 0.112 1 NA 0.925024227016098 3 0.458520810142063 2 2 0 -5.7644125643746 LTS-022 chr17 6116 2937789 2931674 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, DOC2B, MIR22HG, NA NA NA NA NA NA NA NA NA LTS-022 SCARF1, RPH3AL, SGSM2) 0.118967720664568 85 0.0496592929687008 1.09660255936736 3624 0.696883466747492 3 3 0 -6.80041661815807 LTS-022 NA NA NA NA LTS-022 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.146 1 NA NA NA NA NA LTS-022 chr17 2965957 3379677 413721 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.197313787244458 15 0.105837611462088 0.64005615400602 314 0.520538672486627 1 1 0 -6.78362341267808 LTS-022 chr17 3379678 3384912 5235 * c(ASPA, SPATA22) NA 0 NA 1.51 1 NA NA NA NA NA LTS-022 chr17 3384913 8656764 5271852 * c(LOC100128288, C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, CCDC42, ODF4, KCTD11, CTNS, TRPV3, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, NA NA NA NA NA NA NA NA NA LTS-022 C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ASGR2, MIR324, ASPA, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, UBE2G1, TRPV1, ZNF232, MIS12, PHF23, CTC1, NDEL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.132585302287323 243 0.0454461735649782 1.03456472896788 12125 0.561471849443505 3 3 0 -7.08567268102007 LTS-022 NA NA NA NA LTS-022 chr17 8656765 8658918 2154 * SPDYE4 NA 0 NA 0.443 1 NA NA NA NA NA LTS-022 chr17 8658919 8794014 135096 * c(PIK3R6, MFSD6L, PIK3R5, SPDYE4) 0.175687988862206 13 0.0488100714701697 0.716170460423954 269 0.528285295338438 2 2 0 -7.03831085615378 LTS-022 chr17 8794015 9145392 351378 * c(PIK3R5, NTN1) 0.219 1 NA 0.645230300380673 141 0.411426594367928 1 1 0 -5.80173539093573 LTS-022 chr17 9145393 10263473 1118081 * c(USP43, CFAP52, DHRS7C, RCVRN, GAS7, MYH13, GLP2R, NTN1, STX8) 0.227103963466366 12 0.115419754361936 0.671837629985543 813 0.354161392264078 1 1 0 -6.97141558183726 LTS-022 chr17 10263474 10532025 268552 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.272725340123564 10 0.0691217926722262 0.45903419296278 764 0.212479060459095 1 1 0 -7.17040881050591 LTS-022 chr17 10532026 10532946 921 * MYH3 NA 0 NA 1.382 1 NA NA NA NA NA LTS-022 chr17 10532947 14063289 3530343 * c(MIR744, LINC00675, MAGOH2P, COX10-AS1, TMEM220-AS1, COX10, DNAH9, LINC00670, TMEM220, SHISA6, MYH3, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, MYOCD, CDRT15P1, ARHGAP44, HS3ST3A1) 0.221263172629055 39 0.0995550221191769 0.619439471179698 1558 0.347481455516033 1 1 0 -7.02799467510068 LTS-022 chr17 14063290 14095482 32193 * COX10 0.239969241546646 2 0.0268700576850888 0.30330613174226 78 0.120830291624077 1 1 0 -7.48789602936019 LTS-022 chr17 14095483 14095550 68 * COX10 0.474 1 NA 0.787 1 NA NA NA NA NA LTS-022 chr17 14095551 15406489 1310939 * c(TVP23C-CDRT4, MIR4731, COX10, CDRT15, TVP23C, CDRT4, PMP22, TEKT3, MGC12916, CDRT7, HS3ST3B1) 0.255247572334954 10 0.072542784310747 0.557852838044344 425 0.464870303120817 1 1 0 -6.88043457682466 LTS-022 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.16 1 NA NA NA NA NA LTS-022 chr17 15440243 15603144 162902 * c(TVP23C-CDRT4, TRIM16, TVP23C, CDRT1, ZNF286A) 0.231332831981395 7 0.0567974680857552 0.348658523386906 344 0.271218651480015 1 1 0 -7.00904671521878 LTS-022 chr17 15603145 15603592 448 * ZNF286A NA 0 NA 0.026 1 NA NA NA NA NA LTS-022 chr17 15603593 15621783 18191 * ZNF286A NA 0 NA 0.0803305366897416 72 0.0460199466007189 0 NA NA -9.07545362333183 LTS-022 chr17 15621784 15643808 22025 * c(TBC1D26, ZNF286A) 0.282688083881587 2 0.0671751442127221 0.392221831011031 95 0.365580415046569 4 3 1 -6.90694114018532 LTS-022 chr17 15643809 15643818 10 * TBC1D26 NA 0 NA 0.465 1 NA NA NA NA NA LTS-022 chr17 15643819 18315299 2671481 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF287, ZNF624, CDRT15P2, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A) 0.227565729836729 68 0.0659261765541449 0.631302183936928 3842 0.349866630386658 1 1 0 -7.03027878812691 LTS-022 chr17 18315300 18315317 18 * character(0) NA 0 NA 0.046 1 NA NA NA NA NA LTS-022 chr17 18315318 18498144 182827 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.378369457817927 3 0.155887780149696 0.147655791847152 88 0.15793037763435 0 0 0 -7.61269266006855 LTS-022 chr17 18498145 18498409 265 * CCDC144B NA 0 NA 0.449 1 NA NA NA NA NA LTS-022 chr17 18498410 18542582 44173 * c(TBC1D28, CCDC144B) 0.143974992182613 2 0.0544472221513642 0.511359048021222 49 0.580805690399121 2 2 0 -6.75549058499361 LTS-022 chr17 18542583 18544532 1950 * TBC1D28 NA 0 NA 0.247 1 NA NA NA NA NA LTS-022 chr17 18544533 18564206 19674 * c(TBC1D28, ZNF286B) 0.433631539340256 3 0.199199230252864 0.212861794838283 81 0.131743121262554 0 0 0 -6.74961475779756 LTS-022 chr17 18564207 18601656 37450 * c(TRIM16L, FOXO3B, ZNF286B) NA 0 NA 0.696048703589377 113 0.316937687546954 2 NA NA -5.77306302133845 LTS-022 chr17 18601657 18601951 295 * TRIM16L NA 0 NA 0.309 1 NA NA NA NA NA LTS-022 chr17 18601952 18770735 168784 * c(FBXW10, TRIM16L, TVP23B, PRPSAP2) 0.215579772261495 7 0.0644145798343674 0.39760400439109 244 0.27480395973403 1 1 0 -6.86151328289501 LTS-022 chr17 18770736 18775860 5125 * PRPSAP2 NA 0 NA 0.898 1 NA NA NA NA NA LTS-022 chr17 18775861 21081644 2305784 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.21844503086564 33 0.101665179447642 0.618105130456181 2091 0.386635790488711 1 1 0 -6.88714453341339 LTS-022 chr17 21081645 21191422 109778 * c(NATD1, DHRS7B, MAP2K3, TMEM11) NA 0 NA 0.570295619544875 79 0.250483140421034 1 NA NA -5.76705461888334 LTS-022 chr17 21191423 21194679 3257 * MAP2K3 NA 0 NA 0.934 1 NA NA NA NA NA LTS-022 chr17 21194680 21194769 90 * MAP2K3 0.425 1 NA 1.24649678012804 4 0.362215750623851 3 3 0 -5.76441263425088 LTS-022 chr17 21194770 21320410 125641 * c(KCNJ12, MAP2K3) 0.352984215910756 79 0.0779249945215153 1.03908830996479 239 0.565897922232923 3 2 1 -6.74308112646544 LTS-022 chr17 21320411 22066835 746425 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.31801903833691 11 0.0902932595893665 0.534760518440189 209 0.386847978458742 1 1 0 -7.37774596855983 LTS-022 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.609 1 NA NA NA NA NA LTS-022 chr17 25620838 25753033 132196 * c(MIR4522, WSB1, TBC1D3P5) 0.209 1 NA 0.631931147864569 73 0.333333111872073 1 1 0 -5.78103674989446 LTS-022 chr17 25753034 27494082 1741049 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, TIAF1, PIGS, NA NA NA NA NA NA NA NA NA LTS-022 TRAF4, KIAA0100) 0.217382685111454 27 0.0998165125735025 0.617204595610985 3440 0.335852851712057 1 1 0 -6.88407897046416 LTS-022 NA NA NA NA LTS-022 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.234 1 NA NA NA NA NA LTS-022 chr17 27528620 27530504 1885 * character(0) NA 0 NA 0.208545997384707 43 0.059057107711156 0 NA NA -5.76980839733504 LTS-022 chr17 27530505 27573746 43242 * character(0) NA 0 NA 0.503 1 NA NA NA NA NA LTS-022 chr17 27573747 34433730 6859984 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, ABHD15, RFFL, TMEM132E, SPACA3, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, NA NA NA NA NA NA NA NA NA LTS-022 DPRXP4, CRLF3, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, NUFIP2, TAOK1, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, ZNF830, SLFN11, RASL10B, GOSR1) 0.200827470994267 89 0.0960517368887532 0.587147779130286 6818 0.392171127142125 1 1 0 -6.91876377337346 LTS-022 NA NA NA NA LTS-022 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.168 1 NA NA NA NA NA LTS-022 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.0688280089591542 39 0.0670521681406476 0 NA NA -11.9963709646277 LTS-022 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.416 1 NA NA NA NA NA LTS-022 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.230731761641877 20 0.101621835096701 0.605412351624743 1561 0.981066236776609 1 1 0 -6.75120096801629 LTS-022 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.141 1 NA NA NA NA NA LTS-022 chr17 36351756 36421902 70147 * LOC440434 NA 0 NA 0.147432791052371 73 0.0949991147919985 0 NA NA -6.66932253275528 LTS-022 chr17 36421903 36453020 31118 * MRPL45 NA 0 NA 0.474 1 NA NA NA NA NA LTS-022 chr17 36453021 58022936 21569916 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR1203, MIR2117, TOM1L1, MIR3185, MIR3614, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, C17orf112, TSPOAP1-AS1, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4729, MIR4736, MIR4727, MIR5010, MIR5089, LINC00854, HOXB-AS1, PTGES3L, PTGES3L-AARSD1, SNORD124, TOB1, PSME3, EIF1, NBR2, SLC35B1, CALCOCO2, RAMP2, NA NA NA NA NA NA NA NA NA LTS-022 HOXB13, VAT1, P3H4, HEXIM1, IGF2BP1, C1QL1, RUNDC3A, STARD3, CBX1, CHAD, KAT7, NXPH3, SNF8, PLCD3, TMEM106A, OSBPL7, NT5C3B, CLTC, CCR7, HSF5, OR4D2, MSI2, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, WFIKKN2, FLJ40194, B4GALNT2, EFCAB13, MRPL10, GJD3, KRT222, KRT40, CNP, COL1A1, COX11, DYNLL2, CSF3, CD300LG, KIF18B, RUNDC1, EME1, LINC00974, WIPF2, KRT25, TMEM99, ANKFN1, NAGS, FAM134C, TMEM92, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 PHOSPHO1, KRT28, DHX8, DLX3, DLX4, DUSP3, KRT24, ZNF385C, SAMD14, ERBB2, ETV4, EZH1, CASC3, IKZF3, ZNF652, PPM1E, GPATCH8, KCNH4, MMD, FAM215A, MTVR2, GAST, STXBP4, FZD2, G6PC, CACNA1G-AS1, TAC4, KRT23, KAT2A, OR4D1, GFAP, GIP, TUBG2, GNGT2, CCR10, C17orf105, FAM171A2, MEIOC, TTLL6, LOC284080, C17orf47, CISD3, GSDMA, KRT42P, PTRF, GDPD1, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, SNX11, TBX21, HCRT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 SOCS7, HLF, AOC2, KLHL10, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HSD17B1, ASB16-AS1, C17orf67, MSL1, KRT27, LRRC37A11P, STAC2, IFI35, SKA2, IGFBP4, KRT26, PRAC2, ITGA2B, ITGA3, ITGB3, JUP, HILS1, RNF126P1, ARL4D, KPNB1, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, RPRML, KRT33B, YPEL2, KRT34, KRT35, ARL5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 KRT39, LASP1, TOB1-AS1, LPO, CUEDC1, HOXB-AS3, MIR10A, MIR142, MIR152, MIR196A1, MIR21, MIR301A, NBR1, ADAM11, MEOX1, MLLT6, MPO, MPP2, MPP3, GPR179, TRIM37, MYL4, NAGLU, ACLY, NEUROD2, NFE2L1, NGFR, NME1, NME2, NMT1, FBXO47, SOST, UTP18, TUBD1, RAPGEFL1, ABI3, COPZ2, MRPL27, ATP5G1, SLC25A39, PDK2, MRPS23, PTRH2, LUC7L3, HIGD1B, CDK12, PHB, ATP6V0A1, PNMT, SEPT4, KRT20, MED1, MBTD1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RNF43, MKS1, LINC00483, EPN3, PNPO, KLHL11, SMG8, TMEM100, RSAD1, LRRC59, PPY, MSX2P1, PRR11, GSDMB, TEX14, PSMB3, CA10, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, PCTP, RAB5C, RAD51C, RARA, SCPEP1, FKBP10, RPL19, RPL27, SNORA21, RPS6KB1, XYLT2, SRSF1, SGCA, SPATA20, SLC4A1, UBE2Z, WNK4, KRTAP4-11, MRPL45P2, NME1-NME2, SMARCE1, SP2, BRCA1, STAT3, STAT5A, STAT5B, SUPT4H1, MLX, THRA, TOP2A, DNAJC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, FLJ45513, KRTAP2-3, UBTF, WNT3, WNT9B, FMNL1, MIR454, PCGF2, TRIM25, VEZF1, CACNB1, C17orf53, TMUB2, DHX58, PRR15L, DHX40, ACBD4, DCAKD, PLEKHH3, DBF4B, ACSF2, CDK5RAP3, SP6, COASY, SRCIN1, AARSD1, RND2, FAM117A, COIL, AKAP1, VMP1, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, EPX, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 KRTAP17-1, PIP4K2B, SPOP, MYCBPAP, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, PRAC1, GHDC, KRTAP4-4, KIF2B, PPP1R9B, TNS4, FBXL20, CNTNAP1, DGKE, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, SKAP1, AOC3, BECN1, KRT38, KRT37, KRT36, ABCC3, CACNA1G, HAP1, MAP3K14, SPAG9, LRRC46, SCRN2, AOC4P, MTMR4, ANKRD40, NOG, TSPOAP1, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 NPEPPS, GOSR2, NR1D1, TBKBP1, MED24, CDC6, CDC27) 0.210806598716391 614 0.082183910029743 0.662473554467258 26767 0.397752659950693 1 1 0 -8.9522410969214 LTS-022 NA NA NA NA LTS-022 chr17 58022937 58176778 153842 * c(MIR4737, RNFT1, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1) 0.224330992393914 2 0.0268700576850888 0.50353891970259 325 0.339517405730431 1 1 0 -6.75914958160111 LTS-022 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.218 1 NA NA NA NA NA LTS-022 chr17 58177075 58180107 3033 * LOC653653 0.255795828055942 5 0.0807446592661087 0.235225890949458 66 0.117044697895126 1 1 0 -6.94501669197444 LTS-022 chr17 58180108 58227299 47192 * LOC653653 NA 0 NA 1.03 1 NA NA NA NA NA LTS-022 chr17 58227300 75493400 17266101 * c(SNORA38B, SMIM6, CD300LD, LOC100287042, MIR4316, LINC00674, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, MIR4738, MIR4524A, MIR3064, MIR5047, MIR4524B, CDK3, DCAF7, ABCA10, ABCA9, ABCA8, ATP5H, APPBP2, ST6GALNAC2, GNA13, SEPT9, CD300C, TLK2, POLG2, CD300A, DDX42, CYGB, RNF157, FTSJ3, METTL23, USH1G, CD300LB, KIF19, C17orf64, CSH1, CSH2, CSHL1, MGAT5B, CD300LF, C17orf77, TCAM1P, EFCAB3, LOC146880, NA NA NA NA NA NA NA NA NA LTS-022 AANAT, CYB561, MARCH10, ACE, DDX5, CEP112, SLC39A11, AMZ2P1, TRIM65, UNC13D, ERN1, EVPL, BPTF, FDXR, ARSG, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, WBP2, CDC42EP4, GALK1, NOL11, TANC2, NAT9, PITPNC1, GH1, GH2, CACNG5, CACNG4, LINC00469, FADS6, HID1, TSEN54, UBALD2, C17orf58, MILR1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, ICAM2, METTL2A, MRPL58, CD300E, NACA2, OTOP3, APOH, GPR142, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ZACN, ITGB4, LRRC37A3, KCNJ2, KCNJ16, KPNA2, C17orf82, BTBD17, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, MAP3K3, MXRA7, TBC1D3P2, PLEKHM1P1, LOC440461, ACOX1, MRPS7, HN1, TACO1, AMZ2, PECAM1, SDK2, FAM20A, BCAS3, TMEM104, C17orf80, WIPI1, PRKAR1A, PRKCA, ST6GALNAC1, TEX2, GPRC5C, MAP2K6, PRPSAP1, CCDC47, PSMC5, PSMD12, MIF4GD, INTS2, CASKIN2, SLC25A19, RPL38, SCN4A, UBE2O, SEC14L1, SRSF2, CPSF4L, SMIM5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 DNAI2, SMURF2, MRPL38, SNHG20, SMARCD2, SUMO2, SOX9, SRP68, SSTR2, SCARNA20, SCARNA16, SNORA50C, SNORD1A, SNORD1B, SNORD1C, TBX2, SNORD104, MIR634, MIR635, MIR636, LOC729683, CA4, PRCD, CACNG1, MFSD11, ARMC7, RHBDF2, NUP85, MYO15B, LIMD2, KCNH6, AXIN2, BRIP1, QRICH2, USP32, FAM104A, PPM1D, MGC16275, FBF1, UNK, RGS9, GALR2, SPHK1, CEP95, TRIM47, SLC16A6, SLC16A5, STRADA, PRR29, OTOP2, SLC9A3R1, COG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RECQL5, TTYH2, TBX4, CD79B, TMEM94, MRC2, HELZ, MED13) 0.197453775172078 248 0.0727779283920763 0.654415748535836 14317 0.364684353064732 1 1 0 -8.73635685437958 LTS-022 NA NA NA NA LTS-022 chr17 75493401 76267593 774193 * c(TNRC6C-AS1, C17orf99, LOC100507351, LOC100996291, SEPT9, TMC6, AFMID, TMC8, TMEM235, BIRC5, FLJ45079, TNRC6C, TK1, SYNGR2) 0.148840322172829 14 0.0593295878967653 1.08729444587517 714 0.61772368514586 2 2 0 -6.81959798641317 LTS-022 chr17 76267594 78298978 2031385 * c(C1QTNF1-AS1, MIR4739, CEP295NL, LOC100996291, DNAH17-AS1, C1QTNF1, CANT1, TBC1D16, RBFOX3, GAA, SLC26A11, ENPP7, LGALS3BP, CCDC40, CBX8, USP36, RNF213, SGSH, ENGASE, TIMP2, CARD14, CBX2, CBX4, DNAH17, SOCS3, CYTH1, PGS1, EIF4A3) 0.196551156058169 57 0.0590887622951601 0.7354180265904 2261 0.397082257082034 2 2 0 -7.38142869441022 LTS-022 chr17 78298979 78301659 2681 * RNF213 NA 0 NA 0.608 1 NA NA NA NA NA LTS-022 chr17 78301660 80350485 2048826 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, MIR4740, MIR4730, ALYREF, BAIAP2, PPP1R27, SLC38A10, CSNK1D, TEPSIN, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, ARHGDIA, TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, RPTOR, BAHCC1, NA NA NA NA NA NA NA NA NA LTS-022 RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, ACTG1, MIR657, ASPSCR1, CHMP6, OGFOD3, FAAP100, TSPAN10, SLC16A3, HGS, CD7, MAFG-AS1, AATK) 0.198148892613713 111 0.0726086623910526 0.650907472752045 4141 0.37100724394615 1 1 0 -7.06645558517268 LTS-022 NA NA NA NA LTS-022 chr17 80350486 80386556 36071 * c(HEXDC, OGFOD3) 0.185 1 NA 1.65260203058813 60 1.23594956050063 5 5 0 -5.76446907920268 LTS-022 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.462 1 NA NA NA NA NA LTS-022 chr17 80391535 81083528 691994 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.204916413533617 33 0.0619072497835074 0.725037947796828 931 0.352198674125076 1 1 0 -7.03439352274844 LTS-022 chr17 81083529 81083625 97 * character(0) NA 0 NA 0.843601087696325 3 0.263271722750469 2 NA NA -5.76441015193982 LTS-022 chr18 116845 121139 4295 * ROCK1P1 0.354 1 NA 0.463722865402959 27 0.183063951274985 1 1 0 -5.76629649266671 LTS-022 chr18 121140 122129 990 * ROCK1P1 NA 0 NA 0.280574623763423 27 0.140747465351419 0 NA NA -5.76525108404799 LTS-022 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.636 1 NA NA NA NA NA LTS-022 chr18 122232 14866503 14744272 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, CETN1, RALBP1, AFG3L2, RAB31, CIDEA, ADCYAP1, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, CLUL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, NA NA NA NA NA NA NA NA NA LTS-022 TYMSOS, C18orf61, CEP192, ENOSF1, LINC00470, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, TYMS, YES1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, COLEC12, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, USP14, L3MBTL4, VAPA, DLGAP1, LPIN2, THOC1, PPP4R1) 0.391271513385017 183 0.109071699176093 0.898972735741473 6792 0.585362220282779 2 1 1 -6.83850439118142 LTS-022 NA NA NA NA LTS-022 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.38879116413882 33 0.847960421773292 4 NA NA -5.76468291001835 LTS-022 chr18 18529727 18529837 111 * ROCK1 0.391 1 NA 0.438575460982746 3 0.295127091267474 1 1 0 -5.76444432642965 LTS-022 chr18 18529838 18535133 5296 * ROCK1 NA 0 NA 0.333298875092557 50 0.139414110784075 0 NA NA -5.78322050551355 LTS-022 chr18 18535134 34324091 15788958 * c(CDH2, ZSCAN30, GATA6-AS1, MIR302F, MIR320C1, MIR320C2, MIR4741, MIR3975, DSG2-AS1, ZNF271P, MAPRE2, ESCO1, OSBPL1A, INO80C, TTC39C, PSMA8, SLC25A52, DSG4, AQP4-AS1, ANKRD29, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, CABYR, GATA6, KCTD1, C18orf8, AQP4, CCDC178, LAMA3, MIR1-2, MIR133A1, MIR187, MEP1B, WBP11P1, NPC1, RNF138, RNF125, MOCOS, RPRD1A, ELP2, NA NA NA NA NA NA NA NA NA LTS-022 IMPACT, MIB1, KLHL14, RBBP8, HRH4, ROCK1, CTAGE1, GAREM1, SNRPD1, SS18, TAF4B, TTR, PCAT18, LOC729950, ZNF24, GREB1L, FHOD3, ASXL3, CHST9, C18orf21, ZNF397, TMEM241, NOL4, RIOK3, CABLES1, B4GALT6) 0.364373899519529 111 0.167491665909257 0.888810022946536 7101 0.593777608678306 2 1 1 -6.83682855282937 LTS-022 NA NA NA NA LTS-022 chr18 34324092 34539489 215398 * c(TPGS2, KIAA1328, FHOD3) NA 0 NA 0.984268113218292 101 0.373663986029488 2 NA NA -5.78507007525438 LTS-022 chr18 34539490 34646830 107341 * KIAA1328 NA 0 NA 0.485 1 NA NA NA NA NA LTS-022 chr18 34646831 34850846 204016 * c(CELF4, KIAA1328) 0.061 1 NA 0.637281738386066 69 0.376343459360249 1 1 0 -5.78680075042312 LTS-022 chr18 34850847 48611125 13760279 * c(SNORD58C, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, SKA1, CFAP53, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, PIK3C3, DYM, ELAC1, MAPK4, CELF4, EPG5, RIT2, RPL17, KC6, MIR924HG, SKOR2, SLC14A1, NA NA NA NA NA NA NA NA NA LTS-022 SCARNA17, SYT4, SLC14A2, KATNAL2, MRO, HDHD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.185307869519187 64 0.108400743678993 0.623140213030596 4291 0.407089734490733 1 1 0 -7.62407861622701 LTS-022 NA NA NA NA LTS-022 chr18 48611126 52899906 4288781 * c(LINC01630, POLI, STARD6, C18orf54, DCC, DYNAP, SMAD4, MEX3C, RAB27B, SNORA37, TCF4, CCDC68, MBD2) 0.202061194442227 18 0.101504064762938 0.469984311449693 993 0.299645300674136 1 1 0 -7.28718066303277 LTS-022 chr18 52899907 61271839 8371933 * c(LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TCF4, TNFRSF11A, SERPINB12, SEC11C, TXNL1, ONECUT2, VPS4B) 0.229396786372257 89 0.0840478425455878 0.581349142252703 4070 0.424787975220981 1 1 0 -6.87298672534244 LTS-022 chr18 61271840 61304514 32675 * SERPINB4 NA 0 NA 0.15 1 NA NA NA NA NA LTS-022 chr18 61304515 61323392 18878 * c(SERPINB3, SERPINB4) 0.262052778186154 2 0.0014142135623731 0.218799161532371 71 0.128149934193517 16 12 4 -10.3128936945204 LTS-022 chr18 61323393 61324141 749 * c(SERPINB3, SERPINB4) NA 0 NA 0.501 1 NA NA NA NA NA LTS-022 chr18 61324142 71807489 10483348 * c(CDH7, LINC01541, LOC100505817, MIR5011, CD226, CBLN2, FBXO15, DOK6, LINC00305, RTTN, HMSD, LOC284294, CDH19, LINC01538, LOC400655, SERPINB2, SERPINB8, SERPINB10, TMX3, SERPINB3, SERPINB4, LOC643542, CCDC102B, NETO1, SERPINB7, SERPINB11, DSEL, SOCS6) 0.231991449710741 44 0.0838598196075384 0.487438702078067 1769 0.262244897911699 1 1 0 -7.64207005094682 LTS-022 chr18 71807490 71807495 6 * FBXO15 NA 0 NA 0.869 1 NA NA NA NA NA LTS-022 chr18 71807496 77917479 6109984 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, PARD6G, CNDP1, CTDP1, ZNF516) 0.207146043840755 65 0.0723500372122598 0.625880988607055 2445 0.354434574201797 1 1 0 -7.29536121173362 LTS-022 chr18 77917480 78005362 87883 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.568002513576983 62 0.183752679069027 1 NA NA -5.76773751408333 LTS-022 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.194 1 NA 0.943364164786288 17 0.664119053820216 2 2 0 -5.76715055808205 LTS-022 chr19 282754 8807932 8525179 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-022 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, ANGPTL4, MARCH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.191754073353513 420 0.0797295018851175 0.763336657969224 15216 0.553210917322525 2 2 0 -7.14880670577342 LTS-022 NA NA NA NA LTS-022 chr19 8807933 9868826 1060894 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, ZNF846, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, MBD3L1, ZNF561, MUC16) 0.225837877702223 84 0.113713691537756 0.536287363956423 2069 0.350191629070337 1 1 0 -6.7357273395198 LTS-022 chr19 9868827 10370490 501664 * c(SNORD105B, MIR4322, ZNF846, DNMT1, C3P1, P2RY11, COL5A3, RDH8, MRPL4, PIN1, FBXL12, C19orf66, PPAN, UBL5, SNORD105, PPAN-P2RY11, ANGPTL6, EIF3G, S1PR2, OLFM2) 0.200490630939884 20 0.046560063076463 0.689320244007425 1100 0.435365599191132 1 1 0 -6.91841344516021 LTS-022 chr19 10370491 10385555 15065 * c(ICAM1, MRPL4) NA 0 NA 0.620243313698062 10 0.261452035116705 1 NA NA -5.76678899601561 LTS-022 chr19 10385556 10395683 10128 * ICAM1 0.364 1 NA 1.09478397070767 33 0.395072694212244 3 3 0 -5.76451303573099 LTS-022 chr19 10395684 10406272 10589 * c(ICAM1, ICAM4, ICAM5) 0.389051302223692 4 0.0419602986961088 0.953333644423474 113 0.352811078005766 5 3 2 -6.75990302406159 LTS-022 chr19 10406273 10407057 785 * ICAM5 NA 0 NA 1.44 1 NA NA NA NA NA LTS-022 chr19 10407058 11687420 1280363 * c(ZGLP1, MIR1181, MIR1238, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM3, ILF3, TMEM205, LDLR, MIR199A1, ECSIT, PDE4A, S1PR5, ACP5, PRKCSH, ANGPTL8, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ELOF1, ATG4D, C19orf52, RAB3D, KEAP1) 0.408476336662506 62 0.102552521014195 1.51767625992032 3018 0.872273969937953 4 2 2 -6.73474624998446 LTS-022 chr19 11687421 12188557 501137 * c(ZNF441, ZNF491, ZNF440, ZNF433, ZNF627, ZNF763, ZNF844, ZNF833P, ACP5, ZNF823, ZNF878, ZNF69, ZNF700, ZNF439) 0.452805559167213 7 0.0364051278439361 0.849541828184053 719 0.914617470197343 2 1 1 -7.47773051083607 LTS-022 chr19 12188558 12221295 32738 * c(ZNF844, ZNF788) 0 2 0 1.5995696634717 70 1.30326996642408 0 0 0 -Inf LTS-022 chr19 12221296 12224720 3425 * ZNF788 0.026 1 NA 0.415562005458912 68 0.10997508297886 1 1 0 -5.77643387488595 LTS-022 chr19 12224721 12224946 226 * ZNF788 NA 0 NA 1.111 1 NA NA NA NA NA LTS-022 chr19 12224947 12494545 269599 * c(ZNF625-ZNF20, ZNF563, ZNF788, ZNF44, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.287654281688706 2 0.342239682094289 0.938539313336032 447 0.53161387260629 3 2 1 -6.78504857849186 LTS-022 chr19 12494546 12500786 6241 * ZNF799 NA 0 NA 0.365 1 NA NA NA NA NA LTS-022 chr19 12500787 12551810 51024 * c(ZNF443, ZNF799) 0.437464966940192 14 0.0437460830271669 0.495462543638952 120 0.230471146805417 2 1 1 -7.12878285924863 LTS-022 chr19 12551811 12740253 188443 * c(ZNF443, ZNF791, ZNF564, ZNF709, ZNF490) 0.451186779598101 5 0.0691433293962621 0.971918338312379 319 0.83965043515504 2 1 1 -6.94564270377806 LTS-022 chr19 12740254 15586597 2846344 * c(MIR1470, LOC100507373, DDX39A, AKAP8, RNASEH2A, KLF1, GIPC1, ILVBL, NACC1, MISP3, PGLYRP2, RLN3, OR1I1, CCDC105, ZNF791, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, BRD4, CASP14, SYCE2, OR7A17, GCDH, OR7C2, OR7A5, OR7C1, SNORD41, AKAP8L, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, OR7A10, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, NOTCH3, WDR83OS, BEST2, CC2D1A, NA NA NA NA NA NA NA NA NA LTS-022 TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, WIZ, RAD23A, RFX1, C19orf67, RASAL3, SLC1A6, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, EPHX3, PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, SYDE1, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.396038214546308 101 0.0876607931373276 1.38138637929136 5200 0.798097750398203 4 2 2 -6.75507453521872 LTS-022 NA NA NA NA LTS-022 chr19 15586598 16146800 560203 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.39388696015661 34 0.0852420742940159 1.11801745975974 591 0.794402378806473 4 2 2 -6.79057866191815 LTS-022 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 3.289 1 NA NA NA NA NA LTS-022 chr19 16178447 18337161 2158715 * c(TMEM221, B3GNT3, KLF2, IFI30, CHERP, CCDC124, NXNL1, CIB3, CALR3, ANKLE1, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, PGLS, FAM32A, SNORA68, ARRDC2, CPAMD8, NWD1, BABAM1, IL12RB1, INSL3, JAK3, SLC27A1, KCNN1, RAB8A, MYO9B, PDE4C, PIK3R2, MAP1S, USE1, ANO8, EPS15L1, RAB3A, RPL18A, MRPL34, SLC5A5, BST2, TPM4, DDA1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, PLVAP, USHBP1, C19orf44, GTPBP3, NA NA NA NA NA NA NA NA NA LTS-022 MPV17L2, HSH2D, AP1M1, F2RL3, HAUS8, MVB12A, MED26) 0.382456073922462 103 0.105015294454159 1.48948401844365 4369 0.897212066550363 4 2 2 -6.77358870149919 LTS-022 NA NA NA NA LTS-022 chr19 18337162 18343766 6605 * PDE4C NA 0 NA 0.843 1 NA NA NA NA NA LTS-022 chr19 18343767 19822218 1478452 * c(MEF2B, MIR3188, MIR3189, SUGP2, CERS1, COPE, LRRC25, NR2C2AP, COMP, NCAN, CILP2, SSBP4, CRTC1, MAU2, FKBP8, TMEM59L, LSM4, GDF1, SLC25A42, JUND, YJEFN3, HAPLN4, BORCS8-MEF2B, NDUFA13, GMIP, PDE4C, ISYNA1, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, KLHL26, ATP13A1, SUGP1, UPF1, LOC729966, BORCS8, UBA52, ZNF14, KXD1, PBX4, KIAA1683, ELL, TSSK6, RFXANK, LPAR2, CRLF1, ARMC6, ZNF101, HOMER3, NA NA NA NA NA NA NA NA NA LTS-022 GDF15) 0.383010285504852 36 0.141008364043268 0.994590482916591 2965 0.544398425388158 3 2 1 -6.81101271351401 LTS-022 NA NA NA NA LTS-022 chr19 19822219 19822231 13 * ZNF14 NA 0 NA 0.692 1 NA NA NA NA NA LTS-022 chr19 19822232 19824879 2648 * ZNF14 0.365 1 NA 0.736572516264725 27 0.21983899184672 2 2 0 -5.76505630993674 LTS-022 chr19 19824880 19825258 379 * ZNF14 0.406 1 NA 1.17233316217639 5 0.309139127255027 3 3 0 -5.76441082257923 LTS-022 chr19 19825259 24115369 4290111 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682) 0.392551037454516 48 0.0707728579971024 0.800880661945883 1425 0.575986567802738 2 1 1 -6.7923208859465 LTS-022 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.673586494901643 95 0.438027529853198 1 NA NA -5.79794867749 LTS-022 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.455 1 NA 0.862865880738644 57 0.363627898746599 2 2 0 -5.76713384803308 LTS-022 chr19 30097269 34991190 4893922 * c(THEG5, UBA2, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, DPY19L3, ZNF507, LSM14A, GPI, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, PDCD5, FAAP24, TDRD12, NA, KIAA0355, ZNF536) 0.387770624610019 44 0.13114734382675 1.04572570429809 2313 0.662023459849995 3 2 1 -6.81933287720487 LTS-022 chr19 34991191 35033708 42518 * WTIP NA 0 NA 0.476 1 NA NA NA NA NA LTS-022 chr19 35033709 35260479 226771 * c(SCGB2B3P, ZNF599, SCGB2B2, ZNF181, ZNF302, SCGB1B2P) 0.460179792345399 2 0.0325269119345812 0.645504851929493 199 0.328931817249357 2 1 1 -8.00841318920411 LTS-022 chr19 35260480 35263583 3104 * ZNF599 NA 0 NA 1.435 1 NA NA NA NA NA LTS-022 chr19 35263584 35862561 598978 * c(HPN-AS1, LINC00904, MIR5196, ZNF792, ZNF599, FAM187B, LGI4, FFAR1, FFAR3, HPN, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, ZNF30, CD22) 0.432139294709985 37 0.0896798275615619 1.06128415085382 1051 0.641268856940936 2 1 1 -6.81462570333553 LTS-022 chr19 35862562 35863820 1259 * character(0) 0.341426406871193 2 0.0742462120245875 0.436162020167133 39 0.471746333572256 9 6 3 -6.74600471824746 LTS-022 chr19 35863821 35898672 34852 * LINC01531 NA 0 NA 0.798 1 NA NA NA NA NA LTS-022 chr19 35898673 36643791 745119 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, GAPDHS, ZBTB32, WDR62, FFAR2, APLP1, SBSN, KRTDAP, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, PRODH2, SDHAF1, OVOL3, TYROBP, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ALKBH6, DMKN, KMT2B) 0.421037833628998 32 0.139151399185065 1.07708168223907 2401 0.61895534965178 2 1 1 -6.80343313206907 LTS-022 chr19 36643792 36673361 29570 * ZNF565 NA 0 NA 0.949 1 NA NA NA NA NA LTS-022 chr19 36673362 37641920 968559 * c(LOC100134317, LINC00665, ZNF420, ZNF565, ZNF567, ZNF585A, ZNF345, ZFP82, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZFP14, ZNF529, LOC644189, LOC728752, ZNF146, ZNF382, ZNF566, ZNF461) 0.391111149270396 17 0.113245179094897 0.873978403103749 1150 0.58416830284073 2 1 1 -6.75058897459182 LTS-022 chr19 37641921 37642319 399 * ZNF585A NA 0 NA 0.515 1 NA NA NA NA NA LTS-022 chr19 37642320 37678109 35790 * c(ZNF585A, ZNF585B) 0.405913868489036 6 0.0926038156161325 0.485236306305882 119 0.382100934383053 2 1 1 -6.7793624762324 LTS-022 chr19 37678110 37678115 6 * ZNF585B NA 0 NA 0.791 1 NA NA NA NA NA LTS-022 chr19 37678116 38388988 710873 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.388187399793379 14 0.169787925249234 0.890757500937879 949 0.504087070926493 2 1 1 -6.74671849576232 LTS-022 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 2.511 1 NA NA NA NA NA LTS-022 chr19 38571875 39303583 731709 * c(SPINT2, MAP4K1, RASGRP4, FAM98C, CAPN12, GGN, SIPA1L3, EIF3K, LGALS4, LGALS7, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, LGALS7B, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A) 0.414928740925026 49 0.100949737442927 1.38016194544125 1900 0.888289238232191 4 2 2 -6.7363627536268 LTS-022 chr19 39303584 39306236 2653 * c(ECH1, LGALS4) NA 0 NA 1.09 1 NA NA NA NA NA LTS-022 chr19 39306237 40519892 1213656 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, RINL, FBXO27, LGALS16, EID2, ECH1, FBL, SIRT2, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, ZNF546, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMC4, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.441641115237451 72 0.0709489321842885 1.07046495423277 2202 0.639500250069724 2 1 1 -6.94863456617053 LTS-022 chr19 40519893 40698260 178368 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10) 0.176328449071313 3 0.259807621135332 0.674659979483636 351 0.417537133548308 2 2 0 -6.77618587390555 LTS-022 chr19 40698261 41962365 1264105 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AKT2, CYP2G1P, PLD3, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.417603770638516 69 0.123274976977686 1.1900362949538 2593 0.660745656020757 4 2 2 -6.80619101812282 LTS-022 chr19 41962366 42315044 352679 * c(PCAT19, CEACAM5, CEACAM3, CEACAM7, CEACAM4, CEACAM6, CEACAM21) 0.457840835023087 7 0.0555213386691914 0.750082387577874 299 0.410568718486859 2 1 1 -7.17360865842718 LTS-022 chr19 42315045 42315160 116 * CEACAM3 NA 0 NA 1.501 1 NA NA NA NA NA LTS-022 chr19 42315161 43023006 707846 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM3, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.436385203298251 23 0.104120217839024 1.19480858049109 1820 0.760124739551624 4 2 2 -6.80140767328793 LTS-022 chr19 43023007 43865617 842611 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P) 0.408916474166546 19 0.0993009190018898 0.643929601217383 282 0.438597647702311 2 1 1 -6.92503046652658 LTS-022 chr19 43865618 43877332 11715 * CD177 0 1 NA 0.5832272469638 21 1.70112190851186 1 1 0 -5.76442294423379 LTS-022 chr19 43877333 44335631 458299 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, ZNF283, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF576, TEX101) 0.191870703936813 16 0.0910561868664984 0.740597443672567 823 0.377231536598276 2 2 0 -6.95323942302512 LTS-022 chr19 44335632 44339578 3947 * ZNF283 NA 0 NA 0.243 1 NA NA NA NA NA LTS-022 chr19 44339579 44983683 644105 * c(LOC100379224, LOC100505715, ZNF234, ZNF285, ZNF283, ZNF404, ZNF284, ZNF233, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.240142972827738 28 0.07728491231772 0.4878616321973 1026 0.233642019201384 1 1 0 -6.85511714734799 LTS-022 chr19 44983684 44988558 4875 * ZNF180 NA 0 NA 1.683 1 NA NA NA NA NA LTS-022 chr19 44988559 50463727 5475169 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, NA NA NA NA NA NA NA NA NA LTS-022 CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, PPP1R37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IRF3, KCNA7, IGFL1, KCNJ14, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, BCAM, MIR150, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CABP5, PRRG2, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, ZNF180, TRAPPC6A, FKRP, TBC1D17, GEMIN7, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 BCL2L12, GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.210589864630686 215 0.072012775376533 0.745857844324941 10981 0.579845231404045 2 2 0 -7.40912794328688 LTS-022 NA NA NA NA LTS-022 chr19 50463728 50463738 11 * SIGLEC11 NA 0 NA 0.289 1 NA NA NA NA NA LTS-022 chr19 50463739 50475074 11336 * c(SIGLEC11, SIGLEC16) 0.247 1 NA 0.282987775865009 45 0.192442099386183 0 0 0 -5.77010154678971 LTS-022 chr19 50475075 50475078 4 * SIGLEC16 NA 0 NA 0.548 1 NA NA NA NA NA LTS-022 chr19 50475079 50662865 187787 * c(SNAR-B2, SNAR-D, IZUMO2, ZNF473, SIGLEC16, LOC400710, VRK3) 0.200133883978213 7 0.0324638993638282 0.593376939158152 184 0.318252464993159 1 1 0 -6.94235999456332 LTS-022 chr19 50662866 50665871 3006 * IZUMO2 NA 0 NA 1.62 1 NA NA NA NA NA LTS-022 chr19 50665872 50826411 160540 * c(IZUMO2, KCNC3, MYH14) 0.147831375126227 10 0.0833669265623031 1.05309082856475 283 0.956407518465764 2 2 0 -6.74266320879191 LTS-022 chr19 50826412 50826418 7 * KCNC3 NA 0 NA 0.701 1 NA NA NA NA NA LTS-022 chr19 50826419 51914553 1088135 * c(SNAR-F, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, KLK13, SIGLEC7, SIGLEC9, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, SYT3, C19orf48, SIGLEC10, CTU1, ACPT, LRRC4B, CD33, NA NA NA NA NA NA NA NA NA LTS-022 NAPSA, KLK4) 0.170531145565237 47 0.0819076215280655 0.74829915948202 2075 0.543464543948131 2 2 0 -6.84678661984797 LTS-022 NA NA NA NA LTS-022 chr19 51914554 52097651 183098 * c(LOC100129083, SIGLEC8, CEACAM18, LINC01530, ZNF175, SIGLEC10, SIGLEC12, SIGLEC6) 0.222066654195884 19 0.0436957182052622 0.497571998543085 439 0.420887684401396 1 1 0 -6.74019662167692 LTS-022 chr19 52097652 52101769 4118 * character(0) NA 0 NA 0.879 1 NA NA NA NA NA LTS-022 chr19 52101770 52227280 125511 * c(SIGLEC14, SPACA6, HAS1, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.204035235435587 8 0.0274301059838586 0.913847725514638 196 0.541067817127903 6 5 1 -6.90130677125682 LTS-022 chr19 52227281 52249135 21855 * FPR1 NA 0 NA 0.404 1 NA NA NA NA NA LTS-022 chr19 52249136 53059455 810320 * c(ZNF480, ZNF534, ZNF578, ZNF836, ZNF610, FPR1, FPR2, FPR3, ZNF615, ZNF841, ZNF808, ZNF880, PPP2R1A, ZNF350, ZNF649, MIR643, ZNF613, ZNF614, ZNF528, ZNF577, ZNF616, ZNF766, ZNF432) 0.237752693098675 27 0.0740062559918141 0.539630257643192 1215 0.324619750540224 1 1 0 -6.77057544558885 LTS-022 chr19 53059456 53059493 38 * ZNF808 NA 0 NA 0.926 1 NA NA NA NA NA LTS-022 chr19 53059494 53059545 52 * ZNF808 0.22 1 NA 0.159 1 NA NA NA NA NA LTS-022 chr19 53059546 53085659 26114 * c(ZNF808, ZNF701) 0.112 1 NA 1.17731445059958 13 1.23105794610435 3 3 0 -5.76441480995503 LTS-022 chr19 53085660 54081851 996192 * c(ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF813, ERVV-1, TPM3P9, ZNF600, ZNF320, ZNF525, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, ZNF321P, ZNF331, ZNF701, ZNF83, ZNF415, FAM90A27P, ZNF28, ZNF137P, ZNF665, ZNF702P, ZNF611, ZNF347, ZNF468, ZNF160, ZNF765, ZNF845) 0.131808767995221 29 0.0732562645482726 0.720185841264363 1301 0.712665168184109 2 2 0 -6.77241985530211 LTS-022 chr19 54081852 54756657 674806 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB5, LILRB3, OSCAR, TMC4, PRPF31, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, NA NA NA NA NA NA NA NA NA LTS-022 MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.136491626344359 46 0.101437153623639 1.09504128720327 1670 0.763748218409695 2 2 0 -6.77921021391954 LTS-022 NA NA NA NA LTS-022 chr19 54756658 54756733 76 * c(LILRB5, LILRA6) NA 0 NA 0.48 1 NA NA NA NA NA LTS-022 chr19 54756734 55385916 629183 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, FCAR, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.141891083551211 54 0.0455331795535033 0.779688793434337 1362 0.606302552382633 2 2 0 -6.74073497558336 LTS-022 chr19 55385917 55386722 806 * FCAR NA 0 NA 1.787 1 NA NA NA NA NA LTS-022 chr19 55386723 56249765 863043 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628, NCR1) 0.119764229416711 66 0.0544985447080138 1.19360094950253 2527 0.729454561218701 3 3 0 -6.78787236667597 LTS-022 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 0.368 1 NA NA NA NA NA LTS-022 chr19 56270381 56289787 19407 * c(RFPL4A, RFPL4AL1) 0.401052031635713 3 0.0588245980295092 0.349263854784957 77 0.237718853368329 0 0 0 -6.77692335924551 LTS-022 chr19 56289788 58509789 2220002 * c(MIMT1, ZNF667-AS1, PEG3-AS1, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF550, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, ZSCAN5B, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF444, ZNF416, VN1R1, ZNF304, ZNF471, USP29, NA NA NA NA NA NA NA NA NA LTS-022 ZNF71, ZNF667, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZSCAN5A, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, GALP, ZNF551, ZNF835, ZNF264) 0.135190765773056 111 0.0639419051950068 0.827995479509517 3584 0.479012610595372 2 2 0 -6.74025708366156 LTS-022 NA NA NA NA LTS-022 chr19 58509790 58509979 190 * ZNF606 NA 0 NA 2.133 1 NA NA NA NA NA LTS-022 chr19 58509980 59074653 564674 * c(A1BG, LOC100128398, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, MZF1, ZNF132, ZNF135, ZNF329, ZNF606, ZBTB45, UBE2M) 0.114109349069162 38 0.0566858528867339 0.998039067953306 1304 0.507797035669787 3 3 0 -6.78148817283388 LTS-022 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.829546614409473 39 0.410874834413907 2 NA NA -5.76442529357259 LTS-022 chr20 68260 138148 69889 * c(DEFB127, DEFB125, DEFB126) 0.2 1 NA 0.271714513588044 39 0.286244975911924 0 0 0 -5.77378853490698 LTS-022 chr20 138149 240188 102040 * c(DEFB127, DEFB129, DEFB128, DEFB132) 0.228948390900246 7 0.0394660794679612 0.361027600964872 71 0.243487488265106 1 1 0 -6.93569374603706 LTS-022 chr20 240189 1553567 1313379 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.182983242676169 48 0.0811418483689988 0.622664218830627 1878 0.42498903637487 1 1 0 -6.93233478695634 LTS-022 chr20 1553568 1586574 33007 * SIRPB1 NA 0 NA 0.0761500308105596 40 0.084124415645473 0 NA NA -8.13653171941583 LTS-022 chr20 1586575 2082732 496158 * c(LOC100289473, SIRPB1, SIRPA, STK35, PDYN, SIRPG) 0.203181382554558 11 0.102808648380465 0.60260180023697 219 0.403204238043375 1 1 0 -6.76781749506604 LTS-022 chr20 2082733 2098088 15356 * STK35 NA 0 NA 0.599267454517132 33 0.115644128229406 1 NA NA -5.77125746214972 LTS-022 chr20 2098089 2124442 26354 * STK35 NA 0 NA 0.763 1 NA NA NA NA NA LTS-022 chr20 2124443 2384151 259709 * c(STK35, TGM6, TGM3) 0.488 1 NA 1.00959336399958 126 0.439480947886886 3 3 0 -5.7785244172335 LTS-022 chr20 2384152 26188981 23804830 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100134868, LINC01432, LOC100270804, TMEM239, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, ADRA1D, CST1, CST2, CST3, CST4, CST5, PRNT, NA NA NA NA NA NA NA NA NA LTS-022 LINC00654, C20orf196, NCOR1P1, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SNX5, GNRH2, LOC284788, LOC284798, FAM182A, MIR663AHG, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PLCB4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, THBD, MIR663A, LINC01433, FAM182B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.414164352460003 320 0.105863198934827 0.946693212830401 12562 0.521617942555452 2 1 1 -7.31729903132688 LTS-022 NA NA NA NA LTS-022 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.90606045776751 3 0.482087474773337 5 NA NA -5.76441073434692 LTS-022 chr20 29625845 29625876 32 * FRG1BP 0.337 1 NA 1.054 1 NA NA NA NA NA LTS-022 chr20 29625877 30193963 568087 * c(MCTS2P, HM13-AS1, DEFB118, MLLT10P1, LINC00028, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, HM13) 0.350365041007462 25 0.0998548613405143 0.882055782231882 339 0.51804728548505 3 2 1 -6.83028544984267 LTS-022 chr20 30193964 30194080 117 * ID1 NA 0 NA 1.257 1 NA NA NA NA NA LTS-022 chr20 30194081 30474825 280745 * c(MIR3193, DUSP15, TTLL9, TPX2, FOXS1, ID1, BCL2L1, COX4I2, MYLK2) 0.361286091039832 16 0.118842122162136 1.33164236668485 442 0.829788945474365 3 2 1 -6.73813733620101 LTS-022 chr20 30474826 30474953 128 * TTLL9 NA 0 NA 0.802 1 NA NA NA NA NA LTS-022 chr20 30474954 36993452 6518499 * c(LOC100287792, TGIF2-C20orf24, MIR499B, MIR4755, LINC00489, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, CEP250, PXMP4, VSTM2L, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, MROH8, CCM2L, SOGA1, TLDC2, SUN5, ROMO1, C20orf173, CNBD2, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, EPB41L1, DLGAP4, RALY, MAPRE1, NCOA6, POFUT1, SAMHD1, AAR2, TRPC4AP, NA NA NA NA NA NA NA NA NA LTS-022 GGT7, GHRH, C20orf203, GSS, HCK, BPIFA4P, XKR7, BPIFB3, EIF6, LBP, ASIP, NNAT, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, C20orf24, CTNNBL1, NDRG3, MIR499A, MYH7B, TP53INP2, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NECAB3, NORAD, SNTA1, SPAG4, BPI, SRC, MIR644A, TGM2, DSN1, BPIFB2, PDRG1, GDF5, DYNLRB1, ITCH, SLA2, MAP1LC3A, ZNF341, KIAA1755, EIF2S2, CPNE1, NFS1, CBFA2T2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 BPIFB1, KIF3B, RBM39, TTI1, TM9SF4) 0.42252253127718 214 0.115718384944235 1.00418636190594 9488 0.646613449253435 2 1 1 -6.99845361023122 LTS-022 NA NA NA NA LTS-022 chr20 36993453 36995346 1894 * LBP NA 0 NA 0.764 1 NA NA NA NA NA LTS-022 chr20 36995347 40705387 3710041 * c(PTPRT, SNHG11, SLC32A1, ADIG, ZHX3, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, PLCG1, RALGAPB, DHX35, LPIN3, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, CHD6, EMILIN3, MAFB) 0.391240974914127 21 0.134812691927585 0.861127631268477 2184 0.445169675323953 2 1 1 -6.74700568298253 LTS-022 chr20 40705388 44987234 4281847 * c(ADA, ACOT8, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, SGK2, WFDC2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, RBPJL, DNTTIP1, FITM2, WFDC12, SPATA25, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, GTSF1L, WFDC5, WFDC13, WFDC11, WFDC9, L3MBTL1, TP53TG5, WFDC10B, HNF4A, KCNS1, SPINT4, MMP9, MYBL2, SLC35C2, IFT52, OSER1, PIGT, PI3, PLTP, CTSA, DBNDD2, EPPIN, JPH2, SLC12A5, NCOA5, KCNK15, NA NA NA NA NA NA NA NA NA LTS-022 SDC4, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLPI, STK4, TNNC2, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, MATN4, WISP2, SYS1, WFDC8, SNX21, ZSWIM1, CD40) 0.383482159040098 82 0.158145464542728 0.962708594675506 4863 0.557803389159256 2 1 1 -6.88067535934584 LTS-022 NA NA NA NA LTS-022 chr20 44987235 45947646 960412 * c(ZNF663P, LOC100131496, MIR3616, TP53RK, OCSTAMP, EYA2, ZMYND8, SLC35C2, ZNF334, ELMO2, SLC13A3, MKRN7P, SLC2A10) 0.386419711166067 17 0.110309791043225 0.832692175169208 895 0.439377560662089 2 1 1 -6.76031980420662 LTS-022 chr20 45947647 46284584 336938 * c(LOC100131496, ZMYND8, NCOA3) 0.25 1 NA 0.728907666879236 192 0.289585809137909 2 2 0 -5.81866058218215 LTS-022 chr20 46284585 47879919 1595335 * c(ARFGEF2, CSE1L, LINC00494, DDX27, SULF2, ZNFX1, PREX1, STAU1, NCOA3) 0.271730237435691 12 0.139165124288314 0.853570165386451 1157 0.55250420234721 2 2 0 -7.22441634846963 LTS-022 chr20 47879920 47942184 62265 * c(SNORD12B, SNORD12C, ZFAS1, ZNFX1, SNORD12) 0.458 1 NA 0.614367412337866 71 0.33145551033584 1 1 0 -5.76968809850585 LTS-022 chr20 47942185 60504892 12562708 * c(MIR298, CDH4, MIR4325, MIR3194, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, TRERNA1, SYCP2, CEBPB, FAM210B, PHACTR3, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, FAM65C, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, SLC9A8, ADNP, SPO11, MOCS3, GNAS, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, FAM209B, SUMO1P1, MIR296, NA NA NA NA NA NA NA NA NA LTS-022 MC3R, NFATC2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, BCAS4, ZFP64, DOK5, RNF114, PMEPA1, CASS4, SALL4, PTGIS, RAB22A, PTPN1, CDH26, FAM217B, BMP7, SNAI1, AURKA, MIR645, TFAP2C, UBE2V1, ZNF217, NPEPL1, TUBB1, ZBP1, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB, B4GALT5, SPATA2) 0.37154639764355 130 0.0920804530777201 0.826037138096173 6924 0.489848428664029 2 1 1 -6.85428544788742 LTS-022 NA NA NA NA LTS-022 chr20 60504893 60507954 3062 * CDH4 NA 0 NA 1.035 1 NA NA NA NA NA LTS-022 chr20 60507955 60509159 1205 * CDH4 0 1 NA 1.71138139345423 7 1.2748187359479 5 5 0 -5.76441052286582 LTS-022 chr20 60509160 60511860 2701 * CDH4 0.399 1 NA 2.24866666894039 9 0.738309894285591 7 7 0 -5.76441872631346 LTS-022 chr20 60511861 61167934 656074 * c(CDH4, MIR1257, MIR4758, ADRM1, HRH3, MIR1-1HG, GATA5, RBBP8NL, LSM14B, C20orf166-AS1, SS18L1, MTG2, LAMA5, MIR1-1, MIR133A2, PSMA7, RPS21, TAF4, CABLES2, OSBPL2) 0.454696277848288 54 0.034810683958807 1.14394138611515 1438 0.561205592358068 4 2 2 -7.67395037683263 LTS-022 chr20 61167935 61167973 39 * MIR1-1HG NA 0 NA 0.58 1 NA NA NA NA NA LTS-022 chr20 61167974 61519042 351069 * c(SLCO4A1-AS1, DPH3P1, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, COL9A3, SLCO4A1, NTSR1, MRGBP) 0.430174757149871 14 0.0262198020964694 0.879208696980365 760 0.604577007195526 2 1 1 -7.08237315806934 LTS-022 chr20 61519043 61519232 190 * DIDO1 0.294 1 NA 0.905083333420415 5 0.844832113499481 2 2 0 -5.76441082226041 LTS-022 chr20 61519233 62872106 1352874 * c(UCKL1-AS1, MIR941-1, MIR941-3, LINC00029, LINC01056, FLJ16779, MIR1914, MIR4326, MIR3196, RTEL1-TNFRSF6B, ARFRP1, RGS19, DIDO1, CHRNA4, BHLHE23, NKAIN4, ZBTB46, SAMD10, ABHD16B, EEF1A2, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, KCNQ2, MIR124-3, MYT1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, ARFGAP1, SLC2A4RG, ZNF512B, PTK6, COL20A1, SLC17A9, LOC63930, SRMS, TCEA2, MIR647, TPD52L2, HAR1A, NA NA NA NA NA NA NA NA NA LTS-022 HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.356626408118682 95 0.0677290365826694 0.856751475834389 3419 0.459971792174455 3 2 1 -7.05620992375541 LTS-022 NA NA NA NA LTS-022 chr20 62872107 62959313 87207 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 0.873067955427021 131 0.412251674893784 2 NA NA -5.76468302311604 LTS-022 chr21 9825764 9825966 203 * MIR3648-1 0.241 1 NA 0.902579496538612 4 0.489908409807384 2 2 0 -5.76441213992395 LTS-022 chr21 9825967 11098664 1272698 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.342130099845766 47 0.0806010894167761 0.748136436863518 212 0.997349366934467 3 2 1 -6.90829288585111 LTS-022 chr21 11098665 11098768 104 * c(BAGE, BAGE3) NA 0 NA 2.31589534859707 6 0.423528708196583 7 NA NA -5.7644103382351 LTS-022 chr21 14745307 14916954 171648 * MIR3156-3 0 1 NA 0.605910418115199 53 0.763686186965925 1 1 0 -5.76657639705087 LTS-022 chr21 14916955 31312350 16395396 * c(GRIK1-AS2, LINC01549, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, LIPI, ABCC13, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, GRIK1, N6AMT1, USP25, POTED, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, ANKRD20A11P, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, RBM11, LINC00158, CHODL-AS1, LINC00113, NA, NA NA NA NA NA NA NA NA NA LTS-022 LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, SAMSN1, GRIK1-AS1, HSPA13, NRIP1, ADAMTS1) 0.412468839224282 99 0.0936187855884087 0.783342097803564 3427 0.501226171381873 2 1 1 -6.96665092710654 LTS-022 NA NA NA NA LTS-022 chr21 31312351 31538170 225820 * character(0) NA 0 NA 0.578 1 NA NA NA NA NA LTS-022 chr21 31538171 32491064 952894 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.431688628740383 9 0.0582210824740011 0.518624859364926 552 0.342100462860381 2 1 1 -7.81189253510788 LTS-022 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.268 1 NA NA NA NA NA LTS-022 chr21 32491171 33765558 1274388 * c(LINC00159, HUNK, MIS18A, MRAP, SCAF4, SOD1, SNORA80A, TIAM1, URB1-AS1, URB1) 0.430973489212089 30 0.0918152880866622 1.06813174160512 961 0.669128838179415 2 1 1 -6.85548133739757 LTS-022 chr21 33765559 33765571 13 * URB1-AS1 NA 0 NA 0.882 1 NA NA NA NA NA LTS-022 chr21 33765572 40778182 7012611 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, BRWD1-AS1, OLIG2, DSCR4, DSCR3, LINC00310, OLIG1, TCP10L, LCA5L, RCAN1, DYRK1A, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, DSCR10, GART, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, SETD4, CLIC6, DNAJC28, C21orf62, C21orf59, NA NA NA NA NA NA NA NA NA LTS-022 EVA1C, ITSN1, SIM2, MRPS6, SLC5A3, SON, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.429960069902921 145 0.0862925568284118 0.89633270605307 6158 0.888717965608167 2 1 1 -6.78296335906842 LTS-022 NA NA NA NA LTS-022 chr21 40778183 40871810 93628 * c(LCA5L, SH3BGR, WRB) 0.422 1 NA 0.757961687275891 81 0.502726809264322 2 2 0 -5.76717757707087 LTS-022 chr21 40871811 41711384 839574 * c(MIR4760, B3GALT5, B3GALT5-AS1, IGSF5, DSCAM, PCP4, SH3BGR) 0.440873598159058 4 0.0591516412846395 0.927076166626869 439 0.475759650994492 2 1 1 -6.91416306779748 LTS-022 chr21 41711385 41719616 8232 * DSCAM NA 0 NA 1.794 1 NA NA NA NA NA LTS-022 chr21 41719617 48084820 6365204 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, DSCAM-IT1, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, NA NA NA NA NA NA NA NA NA LTS-022 KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.43641755719942 293 0.0852347029058982 1.03223904478388 8292 0.645942390266462 2 1 1 -7.12837803168262 LTS-022 NA NA NA NA LTS-022 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.73061439239652 5 0.586714410936019 5 NA NA -5.76441023589656 LTS-022 chr22 16157771 17072607 914837 * c(CCT8L2, POTEH, OR11H1) 0.288288626571088 5 0.200126959703084 0.524619800982098 114 1.24840561074252 1 1 0 -6.80406574559766 LTS-022 chr22 17072608 24342396 7269789 * c(DDTL, MIR301B, CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, IGLL5, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, ZNF280A, COMT, CRKL, ZNF280B, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, TSSK2, SDF2L1, PPIL2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, GSTTP1, DGCR11, DGCR9, POM121L1P, DGCR5, DGCR10, FBXW4P1, POM121L4P, NA NA NA NA NA NA NA NA NA LTS-022 RGL4, GGT3P, TRMT2A, RSPH14, HSFY1P1, CECR6, CECR5, CECR3, CECR2, GNAZ, LOC284865, MIF-AS1, GSC2, POM121L8P, YPEL1, ZDHHC8, VPREB3, SERPIND1, IGLL1, PI4KAP2, TPTEP1, CCDC188, LRRC74B, BCRP2, CHCHD10, MIR130B, MIR185, ARVCF, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BCR, BID, TMEM191C, LL22NC03-63E9.3, CES5AP1, MRPL40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 RTN4R, SLC7A4, SLC25A1, SMARCB1, SLC2A11, TBX1, MIR648, CLDN5, MIR650, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, VPREB1, ZNF70, ZNF74, C22orf29, THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, RIMBP3, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20, DGCR2) 0.3086232910268 207 0.111711329689496 1.42134916907586 9105 0.883961994701081 4 3 1 -6.75225412533217 LTS-022 NA NA NA NA LTS-022 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.133 1 NA NA NA NA NA LTS-022 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.103334989767962 55 0.0559188746195821 0 NA NA -8.7568561162231 LTS-022 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 2.201 1 NA NA NA NA NA LTS-022 chr22 24400149 29755837 5355689 * c(LOC100128531, MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, CHEK2, SGSM1, EMID1, ADORA2A, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, GRK3, AP1B1, EWSR1, TTC28, SPECC1L, CABIN1, SEZ6L, PITPNB, TFIP11, TMEM211, C22orf31, RHBDD3, GGT1, GGT5, TTC28-AS1, POM121L9P, LRRC75B, SRRD, MN1, PIWIL3, MIAT, UPB1, SUSD2, ASPHD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, NA NA NA NA NA NA NA NA NA LTS-022 XBP1, GUCD1, KREMEN1, ZNRF3, TPST2, MYO18B, KIAA1671, HPS4, IGLL3P, LRP5L) 0.287352267162458 91 0.101313745214926 1.51683351863105 4425 0.861129525332854 4 3 1 -6.74048539781823 LTS-022 NA NA NA NA LTS-022 chr22 29755838 29755843 6 * AP1B1 NA 0 NA 1.007 1 NA NA NA NA NA LTS-022 chr22 29755844 29838470 82627 * c(RFPL1S, AP1B1, RFPL1) NA 0 NA 0.777866389246897 75 0.278486626395382 2 NA NA -5.76909978236192 LTS-022 chr22 29838471 29876175 37705 * character(0) NA 0 NA 1.48 1 NA NA NA NA NA LTS-022 chr22 29876176 31600451 1724276 * c(MIR3200, MIR3928, SF3A1, SELENOM, HORMAD2, DUSP18, MORC2-AS1, CABP7, RNF215, MORC2, PES1, SEC14L2, OSBP2, SEC14L3, INPP5J, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, NEFH, NF2, OSM, PLA2G3, MTFP1, TUG1, CCDC157, ZMAT5, SMTN, GATSL3, TCN2, SEC14L6, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, RNF185, GAL3ST1) 0.336333838415766 74 0.112157833762046 1.34660063415619 3134 0.87393285907746 3 2 1 -6.79622662759532 LTS-022 chr22 31600452 31602620 2169 * RNF185 0.396 1 NA 0.549872761092996 55 0.168900361120194 1 1 0 -5.76441873449103 LTS-022 chr22 31602621 31602641 21 * RNF185 0.417 1 NA 1.207 1 NA NA NA NA NA LTS-022 chr22 31602642 31722320 119679 * c(PIK3IP1, PATZ1, LIMK2, RNF185) 0.307596144268381 8 0.142477817822384 1.41442631771689 256 0.844325438923716 4 3 1 -6.74170675246417 LTS-022 chr22 31722321 31741863 19543 * PATZ1 0.437 1 NA 1.48275928851085 93 0.809737761358107 4 4 0 -5.76441536057919 LTS-022 chr22 31741864 33562856 1820993 * c(RFPL3S, RFPL3, RFPL2, C22orf42, PATZ1, PISD, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, LOC339666, DRG1, RTCB, EIF4ENIF1, SLC5A1, SLC5A4, TIMP3, YWHAH, SYN3, DEPDC5, SFI1) 0.423074389068954 51 0.11565576034924 1.558285338086 2037 0.946345489487156 4 2 2 -6.74660332824423 LTS-022 chr22 33562857 33668827 105971 * character(0) NA 0 NA 4.473 1 NA NA NA NA NA LTS-022 chr22 33668828 36536903 2868076 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, MIR4764, RBFOX2, RASD2, HMOX1, MB, MCM5, APOL6, APOL5, APOL3, ISX, LARGE1) 0.427512776359715 26 0.0945829062455059 1.84223614959423 1083 1.11785255457213 6 3 3 -6.77280061585016 LTS-022 chr22 36536904 36537002 99 * APOL3 NA 0 NA 1.351 1 NA NA NA NA NA LTS-022 chr22 36537003 36677400 140398 * c(APOL2, MYH9, APOL4, APOL3, APOL1) 0.441979237979971 23 0.0475415773931373 1.07297898762882 305 0.492022028458434 2 1 1 -7.01856505171261 LTS-022 chr22 36677401 36677444 44 * MYH9 NA 0 NA 1.941 1 NA NA NA NA NA LTS-022 chr22 36677445 36684358 6914 * MYH9 0.388610059527923 6 0.0553594315963113 1.94882754664126 68 0.862333149618314 10 6 4 -6.73509407746299 LTS-022 chr22 36684359 36708338 23980 * MYH9 0.294 1 NA 1.79242061174231 111 0.545699167123408 5 5 0 -5.7644236308691 LTS-022 chr22 36708339 39640703 2932365 * c(LL22NC01-81G9.3, MIR4534, APOBEC3A_B, DNAL4, CACNG2, DDX17, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, ELFN2, C1QTNF6, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, TMPRSS6, APOBEC3H, APOBEC3A, APOBEC3F, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, CBY1, SUN2, TXN2, TMEM184B, GGA1, CYTH4, APOBEC3C, CARD10, H1F0, TEX33, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MFNG, MPST, MYH9, NCF4, EIF3L, PDGFB, POLR2F, TOMM22, NA NA NA NA NA NA NA NA NA LTS-022 PDXP, PVALB, RAC2, APOBEC3G, FAM227A, SOX10, SSTR3, MIR658, MIR659, TST, NOL12, KCTD17, FOXRED2, BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, EIF3D, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.306823183739016 127 0.0974989147129532 1.55678443845415 5466 0.962903109131562 4 3 1 -6.75792568161984 LTS-022 NA NA NA NA LTS-022 chr22 39640704 39713678 72975 * c(PDGFB, RPL3) NA 0 NA 1.70177447558947 55 1.19268206736109 5 NA NA -5.76444823305859 LTS-022 chr22 39713679 39714351 673 * RPL3 NA 0 NA 0.619 1 NA NA NA NA NA LTS-022 chr22 39714352 39771920 57569 * c(TAB1, SNORD43, RPL3, SYNGR1) 0.224 1 NA 0.670602645921385 39 0.355391965852793 1 1 0 -5.77670184289022 LTS-022 chr22 39771921 46641196 6869276 * c(LOC100130899, NDUFA6-AS1, LINC00899, MIR1249, MIR1281, MIR3619, LOC100506472, NUP50-AS1, MIR4763, MIR4762, MIR4766, EFCAB6-AS1, TAB1, SLC25A17, NUP50, TOB2, PACSIN2, PHF21B, FAM83F, TNFRSF13C, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, CYP2D7, CYP2D6, ADSL, WBP2NL, POLR3H, CYB5R3, EP300, FBLN1, TNRC6B, TTLL12, ZC3H7B, KIAA0930, ARHGAP8, SERHL2, XRCC6, TTLL1, SAMM50, ATXN10, NA NA NA NA NA NA NA NA NA LTS-022 SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, CSDC2, RRP7A, MCAT, DESI1, SGSM3, MCHR1, PARVB, LINC00634, OGFRP1, LINC00207, MIRLET7BHG, MIRLET7A3, MIRLET7B, MIR33A, LINC00229, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, PMM1, A4GALT, MIEF1, PPARA, FAM118A, PRR34, PRR5-ARHGAP8, PRR5, SEPT3, MKL1, RANGAP1, BIK, XPNPEP3, PARVG, EFCAB6, SREBF2, ST13, TCF20, TEF, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CENPM, C22orf46, CCDC134, SCUBE1, PNPLA3, L3MBTL2, LDOC1L, POLDIP3, PHF5A, KIAA1644, CACNA1I, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, RBX1) 0.211222377914286 176 0.0725217421496173 0.642931100701915 8883 0.409459303194924 1 1 0 -7.3784977361627 LTS-022 NA NA NA NA LTS-022 chr22 46641197 46658189 16993 * c(PKDREJ, CDPF1) 0.254 1 NA 0.398156224939918 159 0.130370865971094 1 1 0 -5.82118327167849 LTS-022 chr22 46658190 51183804 4525615 * c(LINC01310, CHKB-AS1, MIR3201, MIR4535, PKDREJ, CHKB, KLHDC7B, CPT1B, GTSE1-AS1, TYMP, GRAMD4, MLC1, MAPK8IP2, PLXNB2, BRD1, TBC1D22A, FAM19A5, LOC284933, NCAPH2, C22orf34, CHKB-CPT1B, LINC00898, IL17REL, ARSA, DENND6B, PIM3, ODF3B, ACR, GTSE1, MOV10L1, TTC38, MIOX, TRMU, MAPK11, PANX2, MAPK12, SBF1, SYCE3, CERK, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, CELSR1, PPP6R2, NA NA NA NA NA NA NA NA NA LTS-022 ZBED4, SCO2) 0.211774777517335 116 0.0841358240083213 0.65157886166996 4512 0.36530410823074 1 1 0 -7.35448196975286 LTS-022 NA NA NA NA LTS-022 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.223 1 NA NA NA NA NA LTS-022 chr22 51205930 51206426 497 * c(RABL2B, RPL23AP82) 0.190079002116969 2 0.0190918830920368 0.245169313822527 12 0.0988859152883981 12 10 2 -6.96873537327726 LTS-022 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.322253438323404 61 0.200057084749503 0 NA NA -5.78459096551478 LTS-022 chrX 2699993 2800624 100632 * c(XG, GYG2) 0.258 1 NA 0.586133412825141 135 0.299122526758472 1 1 0 -5.768470300005 LTS-022 chrX 2800625 12734293 9933669 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4, GYG2, FRMPD4) 0.18809618884054 54 0.105193670180205 0.59518756993232 2760 0.394772334165362 1 1 0 -7.09835495327928 LTS-022 chrX 12734294 13338066 603773 * c(GS1-600G8.3, FAM9C, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.228315035193257 7 0.0554702837648446 0.39502786956839 556 0.210041875217159 1 1 0 -7.47809013088394 LTS-022 chrX 13338067 13338156 90 * ATXN3L NA 0 NA 0.75 1 NA NA NA NA NA LTS-022 chrX 13338157 14934464 1596308 * c(LINC01203, MOSPD2, TCEANC, FANCB, EGFL6, GLRA2, GPM6B, GEMIN8, TRAPPC2, OFD1, ATXN3L, RAB9A) 0.162415627368274 9 0.0860355223794864 0.529993451202193 816 0.332338326819032 1 1 0 -6.98834875939531 LTS-022 chrX 14934465 14936809 2345 * MOSPD2 NA 0 NA 1.04 1 NA NA NA NA NA LTS-022 chrX 14936810 15848463 911654 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, VEGFD, CA5BP1, PIGA, TMEM27, ACE2, BMX, ZRSR2, PIR, INE2, AP1S2) NA 0 NA 0.82517045014468 894 0.420913672137102 2 NA NA -5.7666022269173 LTS-022 chrX 15848464 15851062 2599 * AP1S2 NA 0 NA 0.305114577027507 58 0.12540806231325 0 NA NA -5.77066847415626 LTS-022 chrX 15851063 18278300 2427238 * c(MIR4768, SCML2, RAI2, BEND2, GRPR, NHS, TXLNG, CTPS2, RBBP7, SCML1, MAGEB17, S100G, AP1S2, REPS2, SYAP1) 0.281513054454099 4 0.220282394515162 0.890835668083153 1258 0.524514611036362 2 1 1 -6.94247606397913 LTS-022 chrX 18278301 18913283 634983 * c(PHKA2-AS1, SCML2, PHKA2, PPEF1, RS1, CDKL5) 0.5 1 NA 0.940643231309493 361 0.518414756410842 2 2 0 -5.77979892489073 LTS-022 chrX 18913284 20144164 1230881 * c(MIR23C, ADGRG2, EIF1AX, CXorf23, MAP7D2, SH3KBP1, MAP3K15, PDHA1, PHKA2, LOC729609) 0.451589408839011 9 0.0476028127086812 0.918397664150788 1131 0.481274084699981 2 1 1 -7.18754482254458 LTS-022 chrX 20144165 20146530 2366 * EIF1AX NA 0 NA 0.372612452479953 63 0.178475146393509 1 NA NA -5.77068198617943 LTS-022 chrX 20146531 20148691 2161 * EIF1AX NA 0 NA 1.41 1 NA NA NA NA NA LTS-022 chrX 20148692 23019735 2871044 * c(SCARNA9L, PTCHD1-AS, PHEX-AS1, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, KLHL34, YY2, MBTPS2, PHEX, RPS6KA3, SMS) 0.271651526774555 6 0.214814959131497 0.86968314035517 1094 0.566538384456018 2 2 0 -6.95240859044622 LTS-022 chrX 23019736 23096437 76702 * c(PTCHD1-AS, DDX53) 0.462 1 NA 0.401038675197635 48 0.294279573946008 1 1 0 -5.81245688253687 LTS-022 chrX 23096438 23352114 255677 * PTCHD1-AS NA 0 NA 1.686 1 NA NA NA NA NA LTS-022 chrX 23352115 24330019 977905 * c(ZFX-AS1, PRDX4, PTCHD1, SUPT20HL2, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.443093508450329 16 0.0506075998903985 0.888561266171606 980 0.476820445925882 2 1 1 -6.99080883744747 LTS-022 chrX 24330020 24382247 52228 * c(SUPT20HL1, SUPT20HL2) 0.474 1 NA 0.404766121565518 69 0.198049258901433 1 1 0 -5.83206112019268 LTS-022 chrX 24382248 25022319 640072 * c(SUPT20HL1, ARX, PDK3, POLA1, SCARNA23, PCYT1B) 0.346479539261255 5 0.211902571952301 0.870916536651279 458 0.480254227065974 2 1 1 -6.78703409775179 LTS-022 chrX 25022320 25022446 127 * ARX NA 0 NA 3.986 1 NA NA NA NA NA LTS-022 chrX 25022447 25034152 11706 * ARX 0 1 NA 1.71099544698052 62 1.07896181579661 5 5 0 -5.76441548404713 LTS-022 chrX 26156999 27481434 1324436 * c(PPP4R3CP, VENTXP1, MAGEB6, MAGEB18, MAGEB5) 0.429 1 NA 0.511248081042237 164 0.25046801822493 1 1 0 -5.80832904890223 LTS-022 chrX 27481435 27536285 54851 * PPP4R3CP NA 0 NA 1.295 1 NA NA NA NA NA LTS-022 chrX 27536286 37670962 10134677 * c(IL1RAPL1, MAGEB10, DCAF8L1, MAGEB16, CYBB, FAM47A, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, LANCL3, DCAF8L2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, XK, CXorf21, TMEM47) 0.443439821882319 26 0.0430379439028471 0.738728415470953 2232 0.402549415534535 2 1 1 -7.71809968835581 LTS-022 chrX 37670963 46464968 8794006 * c(LOC100132831, ATP6AP2, FUNDC1, CYBB, CXorf38, DDX3X, HYPM, GPR82, GPR34, LINC01281, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, OTC, BCOR, KRBOX4, CHST7, MID1IP1, NYX, RPGR, DUSP21, ZNF674, DYNLT3, TSPAN7, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, SRPX, SLC9A7, CASK, MED14, SYTL5) 0.436105878749138 34 0.0534888080318699 0.866633109468621 3054 0.454630672961681 2 1 1 -6.88966435665829 LTS-022 chrX 46464969 46913962 448994 * c(RP2, LINC01545, SLC9A7, JADE3) 0 1 NA 0.865433305706215 259 0.425189766590591 2 2 0 -5.76506655305148 LTS-022 chrX 46913963 48761923 1847961 * c(SNORA11C, HDAC6, UXT-AS1, MIR4769, PQBP1, SSX3, TIMM17B, EBP, ELK1, FTSJ1, GATA1, PCSK1N, SSX6, SSX9, ERAS, ZNF81, ARAF, SPACA5, CXXC1P1, GLOD5, TBC1D25, CDK16, CFP, NDUFB11, ZNF630, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, TIMP1, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, USP11, RBM10, UXT, INE1, RGN, SLC38A5, JADE3) 0.324074056268673 22 0.18951391455385 0.898735320571272 2852 0.54158134991374 2 1 1 -6.8658104589861 LTS-022 chrX 48761924 48762022 99 * SLC35A2 NA 0 NA 0.899 1 NA NA NA NA NA LTS-022 chrX 48762023 49143993 381971 * c(PIM2, WDR45, PRAF2, GPKOW, CCDC22, KCND1, PRICKLE3, FOXP3, PLP2, OTUD5, GRIPAP1, SYP, TFE3, SLC35A2, CACNA1F, MAGIX, PPP1R3F, CCDC120) 0.346328898180208 18 0.189433175828774 1.05196449059687 1592 0.637316003444124 3 2 1 -6.74168680250133 LTS-022 chrX 49143994 53108389 3964396 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.335293292877419 16 0.153749132788882 0.805978447035787 1324 0.478930340723617 2 1 1 -6.89598775633183 LTS-022 chrX 53108390 54842447 1734058 * c(HUWE1, MAGED2, RIBC1, FGD1, IQSEC2, PHF8, HSD17B10, ITIH6, MIRLET7F2, MIR98, GPR173, GNL3L, FAM120C, TSPYL2, WNK3, SNORA11, KDM5C, SMC1A, TSR2) 0.306201831078347 19 0.217490028002899 0.955859989949417 2535 0.564460949453889 3 2 1 -6.88407407921034 LTS-022 chrX 54842448 54948589 106142 * TRO NA 0 NA 0.497 1 NA NA NA NA NA LTS-022 chrX 54948590 56292257 1343668 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, USP51, PAGE2, ALAS2, APEX2, MAGEH1, PAGE2B, PFKFB1, TRO, FAM104B, PAGE5) 0.351714999471172 14 0.115157226491379 0.72060177261818 791 0.414192170886871 2 1 1 -7.00198927987605 LTS-022 chrX 56292258 57937169 1644912 * c(KLF8, FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA) NA 0 NA 0.687637697632956 477 0.410569536304668 2 NA NA -6.00979177525115 LTS-022 chrX 61999880 63445277 1445398 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, MTMR8, LINC01278) 0 1 NA 0.798803303841176 429 0.67733403906412 2 2 0 -5.77101118764841 LTS-022 chrX 63445278 71934101 8488824 * c(MIR676, VSIG4, OTUD6A, ASB12, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, CITED1, MSN, NONO, OPHN1, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, MTMR8, HDAC8, ZC4H2, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, TAF1, LAS1L, FRMD8P1, NA NA NA NA NA NA NA NA NA LTS-022 OGT, SLC7A3, ZMYM3, ACRC, STARD8, HEPH, MED12) 0.315701221534232 56 0.166505261997113 0.773228530967695 5311 0.453567950929802 2 1 1 -7.11914260250152 LTS-022 NA NA NA NA LTS-022 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.259 1 NA NA NA NA NA LTS-022 chrX 72066651 72299208 232558 * c(PABPC1L2A, PABPC1L2B, FAM226B) 0.461336351538029 3 0.0125033328890074 0.368517954720207 91 0.329274496457126 0 0 0 -11.4152779537269 LTS-022 chrX 72299209 83403205 11103997 * c(MIR374B, FTX, MIR4328, MIR374C, CDX4, CYSLTR1, COX7B, MAP2K4P1, UPRT, MAGEE2, CYLC1, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, RPS6KA6, P2RY10, LPAR4, TTC3P1, PABPC1L2A, KIAA2022, ZCCHC13, PGAM4, MIR374A, NAP1L2, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, CHIC1, ATP7A, POU3F4, ATRX, JPX, MAGEE1, SH3BGRL, NAP1L6, SLC16A2, MIR545, MIR421, XIST, HMGN5, MAGT1, GPR174, FGF16, TSIX, ITM2A) 0.230442271048223 21 0.218676124940625 0.707617446131443 3583 0.458694422758475 2 2 0 -7.71822254461646 LTS-022 chrX 83403206 83411034 7829 * RPS6KA6 NA 0 NA 0.31 1 NA NA NA NA NA LTS-022 chrX 83411035 90693597 7282563 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, PABPC5, RPS6KA6, SATL1, CPXCR1, KLHL4, ZNF711, POF1B, TGIF2LX) 0.407747169247907 16 0.066982460390762 0.547271966027859 1173 0.306062483628316 1 1 0 -9.58541005901308 LTS-022 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.148 1 NA NA NA NA NA LTS-022 chrX 91066177 91138403 72227 * PCDH11X 0.488 1 NA 0.215354795090022 135 0.0999251848382229 0 0 0 -5.8049605240966 LTS-022 chrX 91138404 91873721 735318 * PCDH11X NA 0 NA 0.670329418726987 54 0.56767253554937 1 NA NA -5.82521481891466 LTS-022 chrX 91873722 91878165 4444 * PCDH11X 0.386437826812415 6 0.0492087390612684 0.239382713988111 120 0.312273550894461 5 3 2 -6.85344613864204 LTS-022 chrX 91878166 100626758 8748593 * c(CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, SRPX2, PCDH11X, FAM133A, RPA4, ARL13A, XKRX, XRCC6P5, NAP1L3, TAF7L, PCDH19, TMEM35A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, SYTL4) 0.27422161046912 18 0.185959558819491 0.774913058652587 1920 0.638507854952759 2 2 0 -7.1297500559912 LTS-022 chrX 100626759 101609367 982609 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, GLA, HNRNPH2, BEX5, ARMCX1, ARMCX3, ARMCX6, NXF5, RPL36A, BTK, ZMAT1, ARMCX2) 0.318468667984177 10 0.118994350939679 0.633455283411713 723 0.428509010250921 1 1 0 -7.20028628134125 LTS-022 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.036 1 NA NA NA NA NA LTS-022 chrX 101615285 101625090 9806 * character(0) NA 0 NA 0.305470696207376 45 0.34430097826809 0 NA NA -5.76757450042478 LTS-022 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.876 1 NA NA NA NA NA LTS-022 chrX 101768565 117107441 15338877 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, NA NA NA NA NA NA NA NA NA LTS-022 GLRA4, PAK3, TCEAL9, RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.323592948576336 46 0.169215994093362 0.684504406912829 6990 0.378538635448209 2 1 1 -8.92782926540578 LTS-022 NA NA NA NA LTS-022 chrX 117107442 117117365 9924 * KLHL13 NA 0 NA 1.298 1 NA NA NA NA NA LTS-022 chrX 117117366 118921473 1804108 * c(MIR1277, SLC25A5-AS1, PGRMC1, DOCK11, ZCCHC12, SLC25A43, SEPT6, SNORA69, SLC25A5, SOWAHD, IL13RA1, WDR44, NKRF, KIAA1210, RPL39, CXorf56, UBE2A, MIR766, LONRF3, KLHL13) 0.368676072285037 31 0.134599701225123 0.848459352038213 1501 0.471059097701108 2 1 1 -6.7879825951922 LTS-022 chrX 118921474 118923965 2492 * RPL39 NA 0 NA 0.644 1 NA NA NA NA NA LTS-022 chrX 118923966 147985955 29061990 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, CXorf51B, MIR320D2, MIR514B, LINC00629, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, SLITRK4, SPANXN3, MAGEC3, DCAF12L1, ADGRG4, ACTRT1, GPR119, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, NA, NA, ELF4, INTS6L, ZNF449, NA NA NA NA NA NA NA NA NA LTS-022 F9, GPC4, FGF13, FHL1, FMR1, AFF2, ATP1B4, LDOC1, CT47A11, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, HPRT1, XIAP, DCAF12L2, OR13H1, CCDC160, CXorf66, IGSF1, LOC389895, UBE2NL, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, SPANXN4, NDUFA1, SPANXN1, SPANXN2, MIR424, OCRL, ZDHHC9, TFDP3, MAGEC2, VGLL1, RBMX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 STK26, CT45A6, CT45A1, SASH3, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, RAP2C, RPL39, SPANXA2-OT1, BCORL1, CT47B1, SMIM10, SMIM10L2B, SPANXC, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-022 CT45A2, XPNPEP2, ZIC3, ZNF75D, RNF113A, NKAP, MAP7D3, GPR101, USP26, PHF6, CUL4B, SLITRK2, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, TMEM257, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.369105363500345 89 0.111676659155816 0.707236619163272 9266 0.427964709783376 2 1 1 -8.94714763153862 LTS-022 NA NA NA NA LTS-022 chrX 147985956 148035053 49098 * AFF2 NA 0 NA 1.34 1 NA NA NA NA NA LTS-022 chrX 148035054 148627393 592340 * c(LINC00893, AFF2, IDS, CXorf40A) NA 0 NA 0.946545753701945 520 0.434888421231242 2 NA NA -5.78730031071174 LTS-022 chrX 148627394 148664780 37387 * CXorf40A NA 0 NA 0.221827652248033 54 0.146569971221977 0 NA NA -5.76914619845721 LTS-022 chrX 148664781 148794811 130031 * c(MAGEA11, TMEM185A) 0.343 1 NA 1.08567725895277 45 0.387635185933549 3 3 0 -5.76626420618245 LTS-022 chrX 148794812 149014630 219819 * c(MAGEA8-AS1, MAGEA8, MAGEA11) 0.279342872946398 2 0.0502045814642449 0.60184068215105 103 0.440010815548155 4 3 1 -7.25336275834573 LTS-022 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.135 1 NA NA NA NA NA LTS-022 chrX 149097210 149100977 3768 * CXorf40B NA 0 NA 0.231507458674291 41 0.117212668923191 0 NA NA -5.76451020027067 LTS-022 chrX 149100978 149101817 840 * CXorf40B NA 0 NA 0.649 1 NA NA NA NA NA LTS-022 chrX 149101818 151825944 2724127 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.267185709930982 39 0.171504315089933 0.945437016280523 1564 0.73201836706884 3 2 1 -7.02734012627892 LTS-022 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.074 1 NA NA NA NA NA LTS-022 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.370020154304669 7 0.0581660185528089 0.48271209510305 120 0.375490140094415 3 2 1 -6.95280835427162 LTS-022 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 1.435 1 NA NA NA NA NA LTS-022 chrX 151995517 154051688 2056172 * c(SMIM9, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, SNORA36A, SNORA56, TAZ, ZNF185, NA NA NA NA NA NA NA NA NA LTS-022 NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.3270833884374 93 0.112201726558597 1.03097966724035 4745 0.745277564234818 3 2 1 -6.81712493945157 LTS-022 NA NA NA NA LTS-022 chrX 154051689 154507173 455485 * c(SMIM9, CMC4, RAB39B, CLIC2, F8, MTCP1, FUNDC2, VBP1, BRCC3) 0.276642593540468 12 0.183422925767118 0.805951608623264 679 0.382450498652585 2 1 1 -7.03748937021188 LTS-022 chrX 154507174 154528460 21287 * CLIC2 NA 0 NA 0.663667869954716 33 0.378026201092095 1 NA NA -5.76804845847541 LTS-022 chrX 154528461 154563642 35182 * CLIC2 NA 0 NA 0.626 1 NA NA NA NA NA LTS-022 chrX 154563643 154580169 16527 * CLIC2 NA 0 NA 0.263932422152924 40 0.383559435269966 0 NA NA -5.76517331648018 LTS-022 chrX 154580170 154774986 194817 * TMLHE NA 0 NA 1.10408018689654 39 2.09295505212186 3 NA NA -5.76445937648352 LTS-022 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.238279559848147 25 0.198353699234474 0 NA NA -5.76459155779486 LTS-022 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.041 1 NA 0.993705994108466 17 1.13621730523077 3 3 0 -5.84352658846726 LTS-022 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.76850823920776 3 0.0681273317643758 5 NA NA -5.76441027537086 LTS-022 chr1 65893 721757 655865 * c(LOC100288069, LOC729737, OR4F5) 0.226 1 NA 1.58211692868802 12 0.477130120108919 7 7 0 -5.7691382619435 LTS-023 chr1 721758 1262685 540928 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LINC01342, TTLL10, NOC2L, FAM41C, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, SDF4, CPSF3L, C1orf159, MIR429, HES4, SCNN1D, LINC01128, TNFRSF4, LINC00115, CPTP, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.346844167037229 64 0.115279997946683 1.15967653641781 1663 0.432493003385102 5 3 2 -6.78765234880174 LTS-023 chr1 1262686 1270559 7874 * c(CPTP, TAS1R3) NA 0 NA 1.56558358362928 116 0.313693946831718 7 NA NA -5.76459960274572 LTS-023 chr1 1270560 1328940 58381 * c(DVL1, MXRA8, AURKAIP1, CCNL2) 0.324364121897444 3 0.0521664004253057 1.16171599389636 284 0.239411282614395 6 4 2 -6.78666869735597 LTS-023 chr1 1328941 1330752 1812 * CCNL2 NA 0 NA 1.579 1 NA NA NA NA NA LTS-023 chr1 1330753 1404305 73553 * c(LOC148413, ATAD3C, ANKRD65, MRPL20, TMEM88B, VWA1, CCNL2) 0.168165891022777 6 0.14355300995335 1.42832370987617 272 0.601368489243134 6 5 1 -6.73788625681381 LTS-023 chr1 1404306 1593809 189504 * c(MIB2, ATAD3C, SSU72, TMEM240, ATAD3A, FNDC10, SLC35E2B, ATAD3B, MMP23B, CDK11B) 0.32574404368356 18 0.13187337955514 1.16455544782598 646 0.511582113858104 6 4 2 -6.75530570624423 LTS-023 chr1 1593810 1597382 3573 * c(SLC35E2B, CDK11B) 0.317013071778104 4 0.0540401085614503 1.76173820480164 86 0.913922547059992 19 13 6 -6.73541007611957 LTS-023 chr1 1597383 1663985 66603 * c(CDK11A, SLC35E2B, MMP23A, CDK11B, SLC35E2) 0.37470369906685 17 0.0940337470711196 0.925696809080713 272 1.19358103347481 5 3 2 -6.73758998921882 LTS-023 chr1 1663986 1666125 2140 * c(SLC35E2B, SLC35E2) NA 0 NA 1.564 1 NA NA NA NA NA LTS-023 chr1 1666126 1850428 184303 * c(CALML6, GNB1, TMEM52, NADK, SLC35E2B, SLC35E2) 0.344107596004472 18 0.0914421850275592 1.2246785609199 268 0.985761434543467 6 4 2 -6.74153599974704 LTS-023 chr1 1850429 1854837 4409 * TMEM52 0 1 NA 1.14812278866608 21 1.17326742983207 5 5 0 -5.76441494461563 LTS-023 chr1 1854838 2082377 227540 * c(GABRD, PRKCZ, CFAP74) 0.189356286459524 19 0.173461760789346 1.20595657816889 307 0.821362234063694 6 5 1 -6.74060956190278 LTS-023 chr1 2082378 2113565 31188 * PRKCZ 0.365 1 NA 1.10088364997874 49 0.351789319536759 5 5 0 -5.76569102727631 LTS-023 chr1 2113566 11782814 9669249 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, CHD5, NPHP4, FBXO2, FBXO6, ARHGEF16, LOC284661, UBIAD1, ZBTB48, C1orf174, NA NA NA NA NA NA NA NA NA LTS-023 TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, MIR34A, LINC00982, RERE, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, EXOSC10, ERRFI1, HES2, CASZ1, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, TP73-AS1, PLEKHG5, LRRC47, DISP3, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, SLC2A5, SRM, MIR551A, TP73, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, TNFRSF25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TNFRSF14, PER3, THAP3, VAMP3, FBXO44, H6PD, PLCH2, CEP104, KLHL21) 0.279111963789577 275 0.162063049246238 1.15361415784333 9656 0.546008710915873 5 4 1 -6.86429002896236 LTS-023 NA NA NA NA LTS-023 chr1 11782815 11783566 752 * character(0) 0 1 NA 1.34192987435841 11 0.452976238590141 6 6 0 -5.7644204369741 LTS-023 chr1 11783567 11905916 122350 * c(NPPA-AS1, CLCN6, MTHFR, NPPA, AGTRAP) 0.0980735195272069 13 0.180523845999245 1.14274144720478 565 0.372463847135475 4 4 0 -6.82997522902522 LTS-023 chr1 11905917 11982373 76457 * c(NPPA-AS1, NPPA, NPPB, KIAA2013) 0.312 1 NA 1.03857154527513 67 0.206428820620603 4 4 0 -5.76842872819513 LTS-023 chr1 11982374 16346082 4363709 * c(MIR4632, PDPN, CTRC, FHAD1, CLCNKA, LRRC38, AADACL3, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, CELA2B, PLOD1, FBLIM1, TMEM51, VPS13D, MIIP, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, SNORA59B, TNFRSF1B, FLJ37453, ZBTB17, NA NA NA NA NA NA NA NA NA LTS-023 PRDM2, EFHD2, AGMAT, CASP9, DDI2, KIAA2013, DHRS3, C1orf158, TNFRSF8, MFN2) 0.327524136167813 117 0.139180073952985 1.13588694818739 3780 0.398057412672393 5 3 2 -6.88029989892911 LTS-023 NA NA NA NA LTS-023 chr1 16346083 16349043 2961 * c(CLCNKA, HSPB7) NA 0 NA 2.082 1 NA NA NA NA NA LTS-023 chr1 16349044 16360308 11265 * c(CLCNKA, CLCNKB) 0.329331393076309 2 0.0749533188057741 1.6144870809424 90 0.339102538085208 6 4 2 -6.73759221015025 LTS-023 chr1 16360309 16362714 2406 * c(CLCNKA, CLCNKB) 0.400952222694745 2 0.103944696834423 0.623621395465561 40 0.554656159948874 2 1 1 -6.73419167920167 LTS-023 chr1 16362715 17009883 647169 * c(MST1P2, CROCCP3, CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.317410069374797 61 0.103024653529981 1.15825764962139 1012 11.0425880936354 16 11 5 -6.73827779838221 LTS-023 chr1 17009884 17012093 2210 * character(0) 0.241094784586509 5 0.0191128229207514 1.72741758706389 52 0.444845903463272 17 13 4 -6.7394352303739 LTS-023 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.149 1 NA NA NA NA NA LTS-023 chr1 17017583 17197595 180013 * c(MST1L, ESPNP, CROCC) 0.320302695329202 22 0.0920692850344416 1.25193254024107 202 0.48197950849955 6 4 2 -6.75767791937317 LTS-023 chr1 17197596 17197615 20 * CROCC 0.263 1 NA 1.26355902586984 3 0.396671148434065 5 5 0 -5.76441028642408 LTS-023 chr1 17197616 19027239 1829624 * c(PADI2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.259764104476652 53 0.163825826127143 1.21658011130558 1519 0.724268431858621 5 4 1 -6.77706642470764 LTS-023 chr1 19027240 19072090 44851 * PAX7 0 1 NA 1.19635824298175 37 0.809322760294266 5 5 0 -5.76441337490598 LTS-023 chr1 19072091 19202872 130782 * c(PAX7, TAS1R2, ALDH4A1) 0.102104565492545 9 0.175587189484629 1.26542146386516 193 0.980006157924725 9 8 1 -6.763208589831 LTS-023 chr1 19202873 19209792 6920 * c(MIR4695, ALDH4A1) 0.367 1 NA 1.21033114539095 31 0.479561145708364 5 5 0 -5.764410269284 LTS-023 chr1 19209793 19229033 19241 * ALDH4A1 NA 0 NA 1.20707799902349 28 0.186080695216551 5 NA NA -5.76441013517339 LTS-023 chr1 19229034 21134002 1904969 * c(LOC100506730, MINOS1-NBL1, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.288302508952011 93 0.150410355788971 1.11258506238449 3018 0.378218888036132 4 3 1 -6.87927646323339 LTS-023 chr1 21134003 21180181 46179 * EIF4G3 0.485 1 NA 1.04731509450309 55 0.239752780921507 4 4 0 -5.76673760400315 LTS-023 chr1 21180182 22163554 983373 * c(LOC100506801, ECE1, ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3, EIF4G3) 0.294382701695714 28 0.15131224942283 1.15410633972572 1140 0.478883839776073 4 3 1 -6.82599356581473 LTS-023 chr1 22163555 22165314 1760 * HSPG2 NA 0 NA 1.599 1 NA NA NA NA NA LTS-023 chr1 22165315 22180548 15234 * HSPG2 0.477823979247563 5 0.0256183527963841 1.65050255452957 121 0.372962346972121 6 3 3 -10.0348916952341 LTS-023 chr1 22180549 22181129 581 * HSPG2 0 1 NA 2.06558710016647 7 1.85407937622242 9 9 0 -5.7644102220072 LTS-023 chr1 22181130 22192374 11245 * HSPG2 0.145097316028695 3 0.274818728134262 1.56398614549647 74 0.74266859312058 8 7 1 -6.73395301932841 LTS-023 chr1 22192375 22198680 6306 * HSPG2 NA 0 NA 1.244 1 NA NA NA NA NA LTS-023 chr1 22198681 22336287 137607 * c(CELA3A, CELA3B, HSPG2) 0.245111657942017 21 0.159896529043003 1.13601949061608 275 0.940641215415327 4 3 1 -6.74450985705241 LTS-023 chr1 22336288 22453626 117339 * c(CELA3A, LINC00339, WNT4, CDC42) 0.391 1 NA 1.14088730918622 103 0.267911585325971 5 5 0 -5.76752380463633 LTS-023 chr1 22453627 22856601 402975 * c(WNT4, ZBTB40) 0.370659622178783 9 0.0597789911070585 1.12979240722869 213 0.264212350207751 5 3 2 -6.76561797792933 LTS-023 chr1 22856602 22913153 56552 * c(EPHA8, ZBTB40) 0.304 1 NA 1.22061204676562 49 0.281781753548119 5 5 0 -5.7644636374709 LTS-023 chr1 22913154 22929722 16569 * EPHA8 0.261049007566783 9 0.159601848360224 1.24939002635115 113 0.501476275414945 4 3 1 -6.73580548211858 LTS-023 chr1 22929723 22929768 46 * EPHA8 0 1 NA 1.93827619676174 3 1.48184040976078 8 8 0 -5.76441014031215 LTS-023 chr1 22929769 23420844 491076 * c(MIR3115, MIR4253, MIR4684, EPHA8, EPHB2, KDM1A, C1QA, C1QB, C1QC, C1orf234, LUZP1) 0.120875261513786 13 0.166734742507296 1.15780487104781 615 0.455884594034837 6 5 1 -6.87572741227867 LTS-023 chr1 23420845 24922065 1501221 * c(TCEB3-AS1, MIR378F, RCAN3AS, HNRNPR, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, FUCA1, GALE, MDS2, LOC284632, HMGCL, HTR1D, ID3, NCMAP, ASAP3, PNRC2, PITHD1, NIPAL3, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, LUZP1, ZNF436, STPG1) 0.0357285411869613 95 0.0294555751438479 0.765507541306811 2310 0.461642813233944 3 3 0 -6.74315922217484 LTS-023 chr1 24922066 24927399 5334 * NCMAP NA 0 NA 0.228 1 NA NA NA NA NA LTS-023 chr1 24927400 24933056 5657 * NCMAP 0.0599809744172236 9 0.0141872399633536 0.461728077240446 39 0.669132501821016 19 18 1 -6.77250285476433 LTS-023 chr1 24933057 24933131 75 * NCMAP NA 0 NA 0.585 1 NA NA NA NA NA LTS-023 chr1 24933132 25586803 653672 * c(SRRM1, CLIC4, SYF2, NCMAP, RSRP1, RUNX3) 0.0424998365787371 17 0.0486614202785884 0.713038645571709 514 0.293965780617142 3 3 0 -6.74584463746419 LTS-023 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 1.143 1 NA NA NA NA NA LTS-023 chr1 25598904 25656954 58051 * c(RSRP1, RHD) NA 0 NA 1.39556398668111 79 0.446399561655859 6 NA NA -5.76456021759527 LTS-023 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.987 1 NA NA NA NA NA LTS-023 chr1 25666924 29139007 3472084 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, PDIK1L, PAQR7, FAM76A, EXTL1, EYA3, FGR, DNAJC8, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, OPRD1, PAFAH2, ZNF593, YTHDF2, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, PTAFR, RHCE, RPA2, RPS6KA1, GPATCH3, NA NA NA NA NA NA NA NA NA LTS-023 ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, MAP3K6, UBXN11, ATPIF1, THEMIS2) 0.0375357713374155 122 0.0408688193898479 0.753393614429939 5650 0.30709268379167 3 3 0 -6.73546878925512 LTS-023 NA NA NA NA LTS-023 chr1 29139008 33841254 4702247 * c(FAM229A, MATN1-AS1, MIR4254, MIR3605, MIR4420, PTPRU, KHDRBS1, AZIN2, TMEM54, RNF19B, A3GALT2, COL16A1, DCDC2B, ZNF362, LINC01225, PHC2, TXLNA, EPB41, AK2, FABP3, KPNA6, FNDC5, LINC01226, HCRTR1, HDAC1, HPCA, MTMR9LP, ZBTB8OS, SERINC2, LCK, TMEM200B, MATN1, OPRD1, MECR, ZCCHC17, BSDC1, TMEM39B, TRIM62, PEF1, IQCC, TMEM234, ADGRB2, KIAA1522, RBBP4, TINAGL1, SRSF4, S100PBP, MARCKSL1, ZBTB8A, SNORD103C, NA NA NA NA NA NA NA NA NA LTS-023 SNORD103A, ZBTB8B, LAPTM5, CCDC28B, NKAIN1, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1, SNRNP40, SDC3, PUM1) 0.041392590175018 116 0.0501713966367268 1.09384798720654 4756 0.430755084926953 5 5 0 -6.9441819966414 LTS-023 NA NA NA NA LTS-023 chr1 33841255 33944742 103488 * c(PHC2, ZSCAN20) NA 0 NA 0.326 1 NA NA NA NA NA LTS-023 chr1 33944743 34684306 739564 * c(CSMD2, HMGB4, CSMD2-AS1, ZSCAN20, C1orf94) 0.014029417599305 25 0.024180088227024 0.787265916700187 667 0.44087189514867 4 4 0 -7.09039036159927 LTS-023 chr1 34684307 34684746 440 * C1orf94 NA 0 NA 0.717877129770556 11 0.250166853410788 3 NA NA -5.76441677383604 LTS-023 chr1 34684747 35135140 450394 * character(0) NA 0 NA 1.375 1 NA NA NA NA NA LTS-023 chr1 35135141 35228765 93625 * c(GJB4, GJB5) 0.373 1 NA 1.31872644269517 82 0.227799654247231 6 6 0 -5.77239376318597 LTS-023 chr1 35228766 35483304 254539 * c(TMEM35B, SMIM12, GJB4, GJA4, GJB3, DLGAP3, LOC653160, ZMYM6) 0.295754148515395 9 0.163316410687965 1.12023162389641 401 0.405758321462923 4 3 1 -6.7714094630561 LTS-023 chr1 35483305 35484164 860 * ZMYM6 0 1 NA 1.29674985803028 15 0.638612759928 5 5 0 -5.76441663120755 LTS-023 chr1 35484165 36359659 875495 * c(C1orf216, AGO4, NCDN, AGO1, TFAP2E, PSMB2, CLSPN, SFPQ, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.20988999687267 11 0.191286838401011 1.12349193747038 1220 0.312481002029874 5 4 1 -6.7610528438746 LTS-023 chr1 36359660 36385061 25402 * AGO1 0.364 1 NA 1.05033329127072 67 0.298367696350053 4 4 0 -5.76530687334975 LTS-023 chr1 36385062 36929673 544612 * c(OSCP1, COL8A2, AGO3, AGO1, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, MRPS15, SH3D21, STK40, LSM10, THRAP3) 0.280351453439742 20 0.133987224449906 1.09512005767119 1039 0.350579246169436 4 3 1 -6.77523297331126 LTS-023 chr1 36929674 36932124 2451 * c(CSF3R, MRPS15) 0 1 NA 0.947870143483117 21 0.482436998107377 4 4 0 -5.76441592010132 LTS-023 chr1 36932125 37356536 424412 * c(CSF3R, GRIK3) 0.111429400826844 18 0.186835322967839 1.25954861179938 302 1.17379066927146 8 7 1 -6.77547289988206 LTS-023 chr1 37356537 37947266 590730 * c(MIR4255, GRIK3, LINC01137, ZC3H12A) 0.326 1 NA 1.13389506611076 33 0.220887264712389 5 5 0 -5.7926571259172 LTS-023 chr1 37947267 38077590 130324 * c(MIR5581, RSPO1, GNL2, MEAF6, DNALI1, SNIP1, ZC3H12A) 0.342932130641118 14 0.0501860823051855 1.0924716216167 378 0.241225403012315 6 4 2 -6.84631694113325 LTS-023 chr1 38077591 38077628 38 * RSPO1 0 1 NA 2.795 1 NA NA NA NA NA LTS-023 chr1 38077629 38345848 268220 * c(C1orf122, MANEAL, RSPO1, EPHA10, INPP5B, MTF1, C1orf109, CDCA8, YRDC) 0.169108413078412 23 0.195064841758115 1.11493307443317 723 0.486109260128826 5 4 1 -6.7707517353961 LTS-023 chr1 38345849 38447523 101675 * c(SF3A3, INPP5B) 0.403 1 NA 1.05768135808643 181 0.281930804043965 4 4 0 -5.76923886907487 LTS-023 chr1 38447524 39929240 1481717 * c(MIR3659, GJA9-MYCBP, SF3A3, FHL3, MACF1, MYCBP, LINC01343, NDUFS5, UTP11, POU3F1, RHBDL2, RRAGC, KIAA0754, AKIRIN1) 0.365853896790189 30 0.0343765657950597 1.08565767792256 1377 0.250502719712979 5 3 2 -7.00053836793535 LTS-023 chr1 39929241 39980760 51520 * c(MACF1, BMP8A) 0 1 NA 1.19297283519027 87 0.296439751602005 5 5 0 -5.76445840705832 LTS-023 chr1 39980761 40148005 167245 * c(HEYL, BMP8A, HPCAL4, SNORA55, PPIEL, NT5C1A, PABPC4) 0.111930377346775 13 0.140339743443344 1.1990275520381 355 0.707261600344396 8 7 1 -6.79470870059822 LTS-023 chr1 40148006 40149642 1637 * HPCAL4 0.275 1 NA 1.10598758832316 11 0.381954257137494 5 5 0 -5.76446155944948 LTS-023 chr1 40149643 40980731 831089 * c(ZMPSTE24, PPIE, CAP1, TMCO2, COL9A2, ZFP69, MYCL, HPCAL4, TRIT1, PPT1, RLF, OXCT2, SMAP2, EXO5, ZFP69B, BMP8B, MFSD2A) 0.316183333304291 32 0.131072249068239 1.0818523851299 1264 0.392654922801826 4 3 1 -6.85624600400934 LTS-023 chr1 40980732 40981021 290 * EXO5 0 1 NA 1.50059924622611 7 2.56891636409485 6 6 0 -5.76441018382962 LTS-023 chr1 40981022 41485958 504937 * c(NFYC-AS1, SLFNL1-AS1, ZNF684, CTPS1, CITED4, SLFNL1, MIR30C1, MIR30E, NFYC, EXO5, KCNQ4, RIMS3) 0.205020975935144 21 0.200181072793513 1.13372418853371 627 0.494879780838554 5 4 1 -6.73945879092795 LTS-023 chr1 41485959 41488320 2362 * c(SLFNL1-AS1, SLFNL1) 0.385 1 NA 1.17984065004165 55 0.258516752089901 5 5 0 -5.76442113772701 LTS-023 chr1 41488321 41979156 490836 * c(SLFNL1-AS1, EDN2, SCMH1, HIVEP3) 0.325351139724598 12 0.10944141922702 1.11575138601765 336 0.319814340450602 5 3 2 -6.90138834704289 LTS-023 chr1 41979157 42045567 66411 * HIVEP3 0 1 NA 1.08946269906208 31 0.426845538782467 5 5 0 -5.76670597330554 LTS-023 chr1 42045568 42870260 824693 * c(FOXJ3, RIMKLA, GUCA2A, GUCA2B, HIVEP3) 0.179404137484021 16 0.181440244984403 1.17836461177513 332 0.84245849154547 5 4 1 -6.75680462644302 LTS-023 chr1 42870261 42896540 26280 * c(RIMKLA, ZMYND12) 0.42 1 NA 1.10412912323574 37 0.306847694316753 5 5 0 -5.76573946512552 LTS-023 chr1 42896541 43055140 158600 * c(CCDC30, PPCS, ZMYND12) 0.31894479215512 9 0.123787901042244 1.06680830868169 165 0.500955454807515 6 4 2 -6.77691928863794 LTS-023 chr1 43055141 43199041 143901 * c(PPIH, CLDN19, YBX1, CCDC30) 0 1 NA 1.11774972476392 124 0.245920708134189 5 5 0 -5.7728289169384 LTS-023 chr1 43199042 43649508 450467 * c(LOC100129924, EBNA1BP2, ERMAP, CLDN19, CFAP57, SVBP, SLC2A1-AS1, FAM183A, ZNF691, P3H1, SLC2A1, C1orf50) 0.25298900150805 12 0.155204752348358 1.14935552404621 647 0.366800338184439 5 4 1 -6.77304486698187 LTS-023 chr1 43649509 43738774 89266 * c(EBNA1BP2, TMEM125, CFAP57) 0.406 1 NA 1.16538343127296 146 0.359447933387089 5 5 0 -5.76492117517688 LTS-023 chr1 43738775 43885575 146801 * c(MED8, TMEM125, C1orf210, SZT2, MPL, ELOVL1, TIE1, CDC20) 0.119220283713924 6 0.187520665527829 1.16582331393758 459 0.455797335608947 7 6 1 -6.81008727061299 LTS-023 chr1 43885576 43885839 264 * SZT2 NA 0 NA 1.287 1 NA NA NA NA NA LTS-023 chr1 43885840 43916524 30685 * SZT2 0 3 0 1.29387993266322 323 0.688692704193375 0 0 0 -Inf LTS-023 chr1 43916525 43916642 118 * SZT2 0.397 1 NA 1.51391142324739 3 0.504120355999768 6 6 0 -5.76441088429408 LTS-023 chr1 43916643 44121476 204834 * c(SZT2, PTPRF, HYI, KDM4A) 0.381956382117027 9 0.0472169931745388 1.29002954062327 312 0.335783572717213 5 3 2 -6.73815949707911 LTS-023 chr1 44121477 44125976 4500 * KDM4A NA 0 NA 1.066 1 NA NA NA NA NA LTS-023 chr1 44125977 44170316 44340 * c(KDM4A-AS1, KDM4A) 0.392726491823013 2 0.00989949493661167 1.06801389238889 108 0.26771085025141 7 4 3 -6.8172445757958 LTS-023 chr1 44170317 44290530 120214 * c(KDM4A-AS1, ST3GAL3, KDM4A) 0.278 1 NA 1.23709836177388 41 0.234015087068355 5 5 0 -5.76520744161045 LTS-023 chr1 44290531 45092031 801501 * c(MIR5584, KLF17, CCDC24, DPH2, ATP6V0B, RNF220, DMAP1, ST3GAL3, SLC6A9, ERI3, B4GALT2, ARTN, IPO13) 0.20173144886489 17 0.193369712179119 1.1879588070698 826 0.725551894145686 5 4 1 -6.73620734259812 LTS-023 chr1 45092032 45205598 113567 * c(KIF2C, C1orf228, RNF220, TMEM53) 0.409 1 NA 1.12583468555357 189 0.281170988626512 5 5 0 -5.76858701876539 LTS-023 chr1 45205599 45474157 268559 * c(KIF2C, PLK3, BTBD19, BEST4, SNORD55, TCTEX1D4, RPS8, HECTD3, PTCH2, EIF2B3, SNORD46, SNORD38A, SNORD38B) 0.363114734086886 19 0.0387970427521968 1.07370107995072 667 0.263936632686351 5 3 2 -6.88776482855789 LTS-023 chr1 45474158 45474356 199 * HECTD3 0 1 NA 1.22746649288845 5 0.308486952722477 5 5 0 -5.7644104865418 LTS-023 chr1 45474357 45981512 507156 * c(TESK2, TOE1, CCDC163, MMACHC, LINC01144, MUTYH, PRDX1, ZSWIM5, UROD, HECTD3, HPDL) 0.284948803884322 15 0.150964360347859 1.129319893258 615 0.286409108481467 4 3 1 -6.82026554103578 LTS-023 chr1 45981513 46027557 46045 * c(AKR1A1, PRDX1) 0 1 NA 1.08918291520949 11 1.19814738811065 5 5 0 -5.76461324293875 LTS-023 chr1 46027558 46466672 439115 * c(AKR1A1, CCDC17, MAST2, IPP, NASP, TMEM69, GPBP1L1, RPS15AP10) 0.338 1 NA 1.08813169123203 461 0.247647222224416 5 5 0 -5.81025632657116 LTS-023 chr1 46466673 49332724 2866052 * c(EFCAB14-AS1, MKNK1-AS1, LINC00853, TSPAN1, PDZK1IP1, LRRC41, DMBX1, KNCN, MOB3C, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, SLC5A9, FAAH, FOXE3, FOXD2, MAST2, CYP4X1, CYP4A22, TEX38, NSUN4, TRABD2B, SKINT1L, CMPK1, LURAP1, SPATA6, POMGNT1, ATPAF1, STIL, TAL1, FAAHP1, UQCRH, BEND5, RAD54L, FOXD2-AS1, AGBL4, PIK3R3, MKNK1, EFCAB14) 0.0393784255072579 75 0.031167273203136 0.788713017927945 2844 0.340417360779723 3 3 0 -6.77667447310722 LTS-023 chr1 49332725 49332924 200 * AGBL4 NA 0 NA 0.785622187552251 5 0.0369364318796496 3 NA NA -5.76463296681277 LTS-023 chr1 49332925 49511261 178337 * AGBL4 NA 0 NA 1.078 1 NA NA NA NA NA LTS-023 chr1 49511262 50569610 1058349 * c(ELAVL4, AGBL4) 0.269 1 NA 1.0633404197251 39 0.397695397106746 4 4 0 -5.79306773561503 LTS-023 chr1 50569611 51765277 1195667 * c(CDKN2C, FAF1, ELAVL4, TTC39A, RNF11, C1orf185, DMRTA2) 0.123255740732975 16 0.141461169583741 1.01954935989662 568 0.485528924764575 4 4 0 -6.98828211294877 LTS-023 chr1 51765278 51787868 22591 * TTC39A 0.281 1 NA 1.0291332320802 106 0.283379043509025 4 4 0 -5.76486629947601 LTS-023 chr1 51787869 59359392 7571524 * c(LINC01135, MIR761, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, KTI12, MYSM1, OSBPL9, OMA1, LRRC42, TCEANC2, PODN, CPT2, GLIS1, DAB1, SLC25A3P1, LEXM, DHCR24, DIO1, C1orf168, TMEM61, CDCP2, CC2D1B, EPS15, TTC39A, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, GPX7, FAM151A, FAM159A, JUN, MROH7, LDLRAD1, TACSTD2, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, MRPL37, HSPB11, YIPF1, C1orf123, TTC22, NA NA NA NA NA NA NA NA NA LTS-023 ECHDC2, PRKAA2, NDC1, RAB3B, CYB5RL, SCP2, DMRTB1, SLC1A7, COA7, TTC4, C8A, C8B, LRP8, BSND, ZYG11B, PRPF38A, PLPP3, BTF3L4, ZFYVE9, TMEM59) 0.221236305150473 207 0.111944728551029 1.00164473040236 6361 0.45067412789142 4 3 1 -6.83760476052654 LTS-023 NA NA NA NA LTS-023 chr1 59359393 60377783 1018391 * c(LINC01135, MIR4711, CYP2J2, HOOK1, FGGY, HSD52) 0.269155341209292 5 0.246861702173504 1.41658154289628 319 0.389592526196447 6 4 2 -6.77659213190112 LTS-023 chr1 60377784 60456435 78652 * c(C1orf87, CYP2J2) 0.468 1 NA 1.50485553030457 27 0.435441561264371 6 6 0 -5.76493889955054 LTS-023 chr1 60456436 62579907 2123472 * c(PATJ, C1orf87, MGC34796, NFIA, TM2D1) 0.436527485039525 17 0.0518127993498767 1.43570870815147 521 0.474874878272966 6 3 3 -7.06788513182975 LTS-023 chr1 62579908 62628097 48190 * PATJ 0 1 NA 1.45039590597377 63 0.68845501726975 6 6 0 -5.76441533672867 LTS-023 chr1 62628098 62737809 109712 * c(PATJ, KANK4, L1TD1) 0.255503893826575 11 0.231056427582685 1.52491044958223 183 0.902884695802631 8 6 2 -6.73696011049994 LTS-023 chr1 62737810 62739198 1389 * KANK4 0.446 1 NA 1.35104737108652 21 0.982461939163427 6 6 0 -5.76441342156084 LTS-023 chr1 62739199 65325970 2586772 * c(MIR4794, UBE2U, KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, ROR1, PGM1, RAVER2, CACHD1, USP1, DLEU2L, EFCAB7, ATG4C, DOCK7) 0.410752010361788 38 0.144817862749269 1.36552157753736 1533 0.369018953150083 6 3 3 -6.76823652771013 LTS-023 chr1 65325971 65330618 4648 * JAK1 0 1 NA 1.26783746086332 7 0.243229951946321 5 5 0 -5.76452398194825 LTS-023 chr1 65330619 66083729 753111 * c(MIR3671, AK4, JAK1, LEPR, MIR101-1, LEPROT, DNAJC6) 0.340775079235284 17 0.170609181016318 1.32607287539647 504 0.473442966367361 6 4 2 -6.74665066269745 LTS-023 chr1 66083730 66085583 1854 * LEPR NA 0 NA 1.023 1 NA NA NA NA NA LTS-023 chr1 66085584 68619251 2533668 * c(INSL5, GNG12-AS1, MIR3117, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, LEPR, C1orf141, PDE4B, GNG12, MIER1, WDR78, WLS, SGIP1, DIRAS3) 0.313947762759706 48 0.115125432673354 1.07201481569843 1806 0.358455111337924 4 3 1 -6.93938388801172 LTS-023 chr1 68619252 77098337 8479086 * c(ZRANB2-AS1, GNG12-AS1, MIR1262, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, MIR186, LHX8, MSH4, TNNI3K, PIN1P1, LRRC40, DEPDC1, PTGER3, LRRC7, RABGGTB, RPE65, SNORD45C, WLS, ANKRD13C, FPGT, SRSF11, ZRANB2) 0.290792274091144 81 0.122028781264053 1.1799529920541 2953 0.402741630338933 5 4 1 -6.97048840969603 LTS-023 chr1 77098338 77098391 54 * character(0) 0 1 NA 4.394 1 NA NA NA NA NA LTS-023 chr1 77098392 77949076 850685 * c(PIGK, AK5, ST6GALNAC5) 0.155143645796114 11 0.17242289449332 1.2097209190985 341 0.519728790771234 6 5 1 -6.80209813131757 LTS-023 chr1 77949077 78025551 76475 * AK5 0.413 1 NA 1.25291839585263 53 0.618116623018399 5 5 0 -5.76457732915211 LTS-023 chr1 78025552 82459771 4434220 * c(IFI44, IFI44L, DNAJB4, MGC27382, USP33, ADGRL2, ZZZ3, AK5, MIGA1, GIPC2, PTGFR, ADGRL4, FUBP1, NEXN) 0.290581373916333 25 0.122622904331396 1.14901738130418 1322 0.35489799926578 5 4 1 -7.00195795517378 LTS-023 chr1 82459772 82459781 10 * character(0) 0.202 1 NA 0.663 1 NA NA NA NA NA LTS-023 chr1 82459782 84331981 1872200 * MIR548AP 0.481 1 NA 0.863152723202515 29 0.246987784145778 4 4 0 -6.03451850602975 LTS-023 chr1 84331982 92710492 8378511 * c(LINC01364, MIR4423, MIR548AP, GBP4, GBP5, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, GBP6, HFM1, CLCA4, KIAA1107, LRRC8B, LPAR3, DDAH1, EPHX4, MCOLN2, COL24A1, GBP1, GBP2, GBP3, GNG5, ZNF326, BTBD8, GTF2B, LINC01140, BARHL2, CYR61, GBP7, C1orf146, UOX, GBP1P1, FLJ27354, LINC01555, GEMIN8P4, RBMXL1, SH3GLB1, ZNHIT6, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, ODF2L, DNASE2B, LOC646626, BRDT, TGFBR3, NA NA NA NA NA NA NA NA NA LTS-023 LOC729930, TTLL7, RPF1, CDC7, SYDE2, ZNF644, LRRC8C, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.425738095534135 177 0.116564972370648 0.771002151090178 5418 0.998595158356255 4 2 2 -7.04012800133032 LTS-023 NA NA NA NA LTS-023 chr1 92710493 92713571 3079 * c(GLMN, C1orf146) 0 1 NA 0.784059521144878 27 0.277089209821368 3 3 0 -5.7644666425065 LTS-023 chr1 92713572 92975188 261617 * c(GLMN, GFI1, EVI5, RPAP2) 0.117784467597156 10 0.24104128277123 0.731105309704357 242 0.322091216730065 3 3 0 -6.79708095412425 LTS-023 chr1 92975189 92975244 56 * EVI5 0.463 1 NA 0.509 1 NA NA NA NA NA LTS-023 chr1 92975245 94473896 1498652 * c(MIR760, LOC100129046, CCDC18-AS1, DR1, MTF2, ABCA4, SNORA66, GCLM, DNTTIP2, CCDC18, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, EVI5, BCAR3) 0.383299472431041 37 0.161767735659186 0.758166493526494 1273 0.292622105628887 3 2 1 -6.77723330304686 LTS-023 chr1 94473897 94474328 432 * ABCA4 0.482 1 NA 0.889547593645394 3 0.752524418208472 4 4 0 -5.76441414993975 LTS-023 chr1 94474329 109854450 15380122 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, HENMT1, OLFM3, CNN3, SLC44A3, C1orf194, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, FNDC7, SASS6, AGL, DPYD, S1PR1, CELSR2, ALG14, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKNAD1, RWDD3, AMY2A, AMY2B, FAM102B, GPSM2, SLC25A24, MYBPHL, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, NA NA NA NA NA NA NA NA NA LTS-023 PALMD, PRPF38B, PRMT6, RNPC3, TMEM167B, KIAA1324, PTBP2, ABCD3, SORT1, SARS, SPATA42, MFSD14A, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, LOC729970, LOC729987, VCAM1, PSRC1, CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.411230651803746 111 0.147414909172565 0.784178179071821 5834 0.282693842734411 3 2 1 -7.1296569085178 LTS-023 NA NA NA NA LTS-023 chr1 109854451 109854764 314 * SORT1 0 1 NA 0.890329533239775 7 0.628041779016712 4 4 0 -5.76441424303237 LTS-023 chr1 109854765 110048168 193404 * c(ATXN7L2, SYPL2, CYB561D1, PSMA5, SORT1) 0.278159369651458 14 0.226135425728104 0.770363266199686 520 0.311412432852023 3 2 1 -6.77929860147981 LTS-023 chr1 110048169 110048436 268 * character(0) 0.497 1 NA 0.824573824900457 7 0.233642686086907 3 3 0 -5.76443881060974 LTS-023 chr1 110048437 110283134 234698 * c(AMPD2, GNAI3, GNAT2, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, MIR197, AMIGO1, GPR61) 0.449801990991079 32 0.0880864677828077 0.748162950293468 744 0.221827568315324 4 2 2 -7.14057849121144 LTS-023 chr1 110283135 110293886 10752 * c(GSTM3, EPS8L3) 0 1 NA 0.851514671973667 17 0.892981259272424 3 3 0 -5.76454895552228 LTS-023 chr1 110293887 111216415 922529 * c(LAMTOR5-AS1, LAMTOR5, AHCYL1, CSF1, UBL4B, ALX3, KCNA2, KCNA3, KCNA10, KCNC4, SLC6A17, LOC440600, CYMP, RBM15, EPS8L3, PROK1, STRIP1, SLC16A4) 0.360703420331906 29 0.192456104649213 0.775707210100475 1090 0.267846000571359 3 2 1 -6.75067192086588 LTS-023 chr1 111216416 111743098 526683 * c(CEPT1, DRAM2, KCNA3, LRIF1, DENND2D, CD53) 0.334842431900876 7 0.221530068903911 0.715435147544898 333 0.274173295072059 3 2 1 -6.7412170233894 LTS-023 chr1 111743099 111770423 27325 * c(CHI3L2, DENND2D) 0.432 1 NA 0.747756008755381 17 0.107787440608548 3 3 0 -5.76441172324458 LTS-023 chr1 111770424 112281974 511551 * c(LINC01160, CHI3L2, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, PGCP1, OVGP1, ATP5F1, FAM212B, RAP1A, WDR77) 0.439881440520132 41 0.106263535723174 0.698293538575014 742 0.255613388112682 2 1 1 -7.22777514210618 LTS-023 chr1 112281975 113666851 1384877 * c(MIR4256, FAM212B-AS1, DDX20, AKR7A2P1, FAM19A3, PPM1J, KCND3, RHOC, MOV10, ST7L, CTTNBP2NL, FAM212B, LOC643355, SLC16A1, WNT2B, CAPZA1, LRIG2) 0.426028560856752 36 0.112971621664856 0.810519352295317 1232 0.210914132596046 3 2 1 -7.18127679720736 LTS-023 chr1 113666852 114157202 490351 * c(MAGI3, LOC643441, LRIG2) 0 1 NA 0.942220289242894 63 0.341390932160167 4 4 0 -5.76772440934218 LTS-023 chr1 114157203 115223060 1065858 * c(AP4B1-AS1, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, MAGI3, PTPN22, AMPD1, BCL2L15, TRIM33, RSBN1, OLFML3, DCLRE1B) 0.287433160587266 15 0.200161672750043 0.820390797198915 1548 0.253077009938179 3 2 1 -6.86129919925149 LTS-023 chr1 115223061 115284056 60996 * c(AMPD1, NRAS, CSDE1) 0.493 1 NA 0.819051112940935 167 0.237267742897119 3 3 0 -5.7699230146526 LTS-023 chr1 115284057 115312052 27996 * CSDE1 NA 0 NA 0.805494647550067 7 0.0993814201280433 3 NA NA -5.774073643361 LTS-023 chr1 115312053 115312130 78 * SIKE1 NA 0 NA 1.305 1 NA NA NA NA NA LTS-023 chr1 115312131 116385467 1073337 * c(TSPAN2, NGF, NHLH2, SYCP1, TSHB, SIKE1, VANGL1, CASQ2) 0.420328005428066 44 0.100938835539571 0.91008182467177 840 0.284745719738136 4 2 2 -6.80540370490615 LTS-023 chr1 116385468 116563398 177931 * SLC22A15 0 1 NA 0.975761957237282 39 0.427959168534246 4 4 0 -5.76441106676631 LTS-023 chr1 116563399 116612363 48965 * SLC22A15 0.329564205425987 7 0.217815999237452 0.991740151097919 119 0.460979768955658 3 2 1 -6.74560442036338 LTS-023 chr1 116612364 118071369 1459006 * c(MIR942, MIR320B1, MAN1A2, MAB21L3, IGSF3, ATP1A1, SLC22A15, PTGFRN, VTCN1, TRIM45, TTF2, ATP1A1-AS1, CD2, CD101, CD58) 0.294190246148373 30 0.177286575591773 0.832505538001504 1319 0.267664022560129 3 2 1 -6.91384945490359 LTS-023 chr1 118071370 118727881 656512 * c(WDR3, SPAG17, GDAP2, FAM46C) 0.2756212118836 13 0.130778977766463 1.09917717001526 654 0.306684139627074 4 3 1 -6.79450656700781 LTS-023 chr1 119425646 120162620 736975 * c(WARS2, HSD3BP4, HSD3B1, HSD3B2, HAO2, LINC00622, TBX15, ZNF697) 0.241806400437604 6 0.262300336764303 1.43238691151919 331 0.746172708250173 5 4 1 -6.76233967455274 LTS-023 chr1 120162621 120164303 1683 * ZNF697 0.435 1 NA 1.3668357874376 39 0.722802982248343 6 6 0 -5.7644149839065 LTS-023 chr1 120164304 120344900 180597 * c(PHGDH, HMGCS2, REG4, ZNF697) 0.48349263637269 13 0.0121960481199276 1.38266815508989 273 0.46261641718076 6 3 3 -13.9614391610723 LTS-023 chr1 120344901 120344903 3 * REG4 0 1 NA 6.162 1 NA NA NA NA NA LTS-023 chr1 120344904 121116733 771830 * c(SRGAP2D, ADAM30, FCGR1B, HIST2H2BA, NBPF7, NOTCH2, FAM72B, REG4) 0.278293336320149 10 0.15116822858436 1.41917755095999 591 0.976484956592913 7 5 2 -6.75095037342649 LTS-023 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 1.33455120922448 61 0.34602954562882 6 NA NA -5.76980689615265 LTS-023 chr1 143912360 144851537 939178 * c(NBPF20, LOC653513, FAM72D, NA, PFN1P2, PDE4DIP) 0.377 1 NA 1.116540599553 39 0.571967827488148 5 5 0 -5.77485216011915 LTS-023 chr1 144851538 145115887 264350 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.330377436320421 63 0.0921889492040708 1.47111745487657 525 0.513937530605931 6 4 2 -6.73504957272737 LTS-023 chr1 145115888 145136246 20359 * c(NBPF20, SEC22B) NA 0 NA 6.241 1 NA NA NA NA NA LTS-023 chr1 145136247 145138669 2423 * NBPF20 0.281901767838781 3 0.060343461396686 2.58445140697818 50 1.55064466172582 18 13 5 -6.73334979854007 LTS-023 chr1 145138670 145138977 308 * NBPF20 NA 0 NA 1.624 1 NA NA NA NA NA LTS-023 chr1 145138978 145284598 145621 * c(NBPF10, NBPF20, NOTCH2NL) 0.374640852292302 12 0.0693567850780559 1.38748732344846 120 0.425762796676287 5 3 2 -6.7472203060263 LTS-023 chr1 145284599 145597501 312903 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, LIX1L, HFE2, ANKRD35, NUDT17, ANKRD34A, NOTCH2NL, POLR3GL, ITGA10, PEX11B, RBM8A) 0.387018104459418 18 0.105037948324571 1.7122201809566 976 0.795486117513554 7 4 3 -6.73426376288136 LTS-023 chr1 145597502 145689583 92082 * c(NBPF10, NBPF20, POLR3C, RNF115) 0 1 NA 1.83196997437485 119 0.527630253063787 8 8 0 -5.76465255040495 LTS-023 chr1 145689584 147381159 1691576 * c(NBPF10, NBPF20, LINC00624, CD160, NBPF12, PDIA3P1, FMO5, GJA5, GJA8, ACP6, PDZK1, PRKAB2, BCL9, NBPF13P, GPR89A, NA, NA, NA, LOC728989, CHD1L) 0.242458392457661 17 0.182702788220458 1.84548735818066 897 0.640812605064526 8 6 2 -6.73935613583037 LTS-023 chr1 147381160 149379694 1998535 * c(FCGR1CP, MIR5087, NBPF14, GJA8, NBPF15, LINC01138, LOC388692, GPR89B, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.491 1 NA 2.025935848504 118 0.636813051755146 9 9 0 -5.77143156902816 LTS-023 chr1 149379695 151094212 1714518 * c(MIR4257, FALEC, SF3B4, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, RPRD2, CA14, CERS2, HIST2H2AB, HIST2H2BC, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, OTUD7B, LINC00869, PRUNE1, HIST2H3D, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, HORMAD1, ANXA9, PRPF3, SETDB1, SV2A) 0.350900446634535 54 0.15609753441862 1.68522748517572 3135 0.509217052825929 7 4 3 -6.7735234974061 LTS-023 chr1 151094213 151096933 2721 * character(0) 0 1 NA 1.82732633162929 39 0.594021037718667 8 8 0 -5.76441663476856 LTS-023 chr1 151096934 151262173 165240 * c(TNFAIP8L2-SCNM1, SEMA6C, TMOD4, LYSMD1, PSMD4, ZNF687, VPS72, SCNM1, TNFAIP8L2, PIP5K1A) 0.136689385107018 12 0.21150492508056 1.72651344331448 603 0.713164634922919 8 7 1 -6.73476772815202 LTS-023 chr1 151262174 151288172 25999 * c(PI4KB, ZNF687) 0.381 1 NA 1.73442400026823 139 0.480643979763689 7 7 0 -5.76451597136994 LTS-023 chr1 151288173 151669997 381825 * c(POGZ, PI4KB, PSMB4, CGN, RFX5, MIR554, TUFT1, SNX27, SELENBP1) 0.338275608287485 18 0.168346369132215 1.78179224318308 764 0.595995549804213 8 5 3 -6.75109969748229 LTS-023 chr1 151669998 151678383 8386 * c(CELF3, SNX27) 0 1 NA 1.85678095207479 49 1.16705732077134 8 8 0 -5.76441184185026 LTS-023 chr1 151678384 152060490 382107 * c(LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RIIAD1, THEM5, LINGO4, OAZ3, RORC, S100A10, S100A11, MRPL9) 0.2207028816353 19 0.203301061574766 1.8184732029383 716 0.74219045055189 9 7 2 -6.74469561793733 LTS-023 chr1 152060491 152760557 700067 * c(C1orf68, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, CRCT1, TCHH, LCE3D) 0.22539257688406 28 0.0918021437542915 1.46668297404203 876 0.769472471980011 5 4 1 -6.76710684545698 LTS-023 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.864 1 NA NA NA NA NA LTS-023 chr1 152760642 152777590 16949 * c(LCE1C, LCE1D, LCE1E) 0.25662400486506 2 0.0311126983722081 2.34422034740073 40 0.657635000764687 12 9 3 -6.7342590821015 LTS-023 chr1 152777591 153410822 633232 * c(PGLYRP3, LELP1, SPRR4, S100A7A, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PGLYRP4, PRR9, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.229311178282741 42 0.102630888640486 1.48126871169508 588 0.871066797082688 5 4 1 -6.76513287733145 LTS-023 chr1 153410823 153517172 106350 * c(S100A4, S100A5, S100A6, S100A7, S100A7L2) 0.292 1 NA 1.35502908999876 61 0.267712872247886 6 6 0 -5.76748460002897 LTS-023 chr1 153517173 153994647 477475 * c(JTB, SLC27A3, S100A16, CREB3L4, CRTC2, SNAPIN, CHTOP, SLC39A1, ILF2, NPR1, S100A14, GATAD2B, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A13, INTS3, NUP210L, DENND4B) 0.270145496362432 32 0.033917297423529 1.37217713462195 1484 0.356490320843793 4 3 1 -6.99571980285588 LTS-023 chr1 153994648 154128340 133693 * c(TPM3, NUP210L) 0.202 1 NA 1.35721533420568 159 0.288123521430695 6 6 0 -5.76756631110141 LTS-023 chr1 154128341 157062369 2934029 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, FDPS, KIAA0907, SYT11, SMG5, RUSC1, C1orf43, GBA, GBAP1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, INSRR, PEAR1, KCNN3, C1orf189, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, NA NA NA NA NA NA NA NA NA LTS-023 MTX1, MUC1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, HCN3, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, ARHGEF2, MEX3A, SLC25A44, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 ARHGEF11, UBAP2L) 0.197377837938645 165 0.11578178528335 1.41342946321897 8112 0.486739155208198 6 5 1 -6.74693718382145 LTS-023 NA NA NA NA LTS-023 chr1 157062370 157483440 421071 * c(ETV3, CYCSP52, ETV3L, FCRL5) 0.373 1 NA 1.41330000653458 169 0.391559206525282 6 6 0 -5.76486826604588 LTS-023 chr1 157483441 157483644 204 * FCRL5 NA 0 NA 1.51627217154042 6 0.157130200789027 6 NA NA -5.76442433540033 LTS-023 chr1 157483645 157801578 317934 * c(FCRL1, FCRL3, FCRL2, FCRL5, FCRL4, CD5L) 0.30013468466483 38 0.165369485868252 1.84543572028575 674 1.03900973897463 7 5 2 -6.73610512400935 LTS-023 chr1 157801579 157801840 262 * CD5L 0 1 NA 2.19715879071175 6 2.89818656519325 9 9 0 -5.76441015419315 LTS-023 chr1 157801841 158068690 266850 * c(KIRREL, CD5L) 0.141237498118193 10 0.211600252047739 2.00865743100371 198 0.832054442644089 8 7 1 -6.73397873219377 LTS-023 chr1 158068691 158069099 409 * character(0) 0.498 1 NA 1.80364918082769 9 0.751100858740023 8 8 0 -5.76441124262071 LTS-023 chr1 158069100 158549115 480016 * c(OR10T2, OR6P1, OR10X1, OR10R2, OR10K2, OR10K1, OR6Y1, LOC646268, CD1A, CD1B, CD1C, CD1D, CD1E) 0.358158171294699 20 0.127226321341558 1.91091210490098 458 0.810419064861535 8 5 3 -6.73499497614041 LTS-023 chr1 158549116 160113371 1564256 * c(CADM3-AS1, LINC01133, OR10J5, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, MNDA, OR10J3, ATP1A2, DUSP23, SLAMF8, IGSF9, CADM3, SPTA1, OR6N2, OR6K2, TAGLN2, SLAMF9, PIGM, IGSF8, AIM2) 0.329908824556237 73 0.156337945721602 1.74926748017383 2183 1.65041319088353 9 6 3 -6.74648843250868 LTS-023 chr1 160113372 160129180 15809 * c(ATP1A2, ATP1A4) 0 1 NA 1.8172136767461 39 0.78212532777048 8 8 0 -5.76443885471171 LTS-023 chr1 160129181 160141182 12002 * ATP1A4 NA 0 NA 1.5941600027028 26 0.249705454177825 7 NA NA -5.76464125149044 LTS-023 chr1 160141183 160141268 86 * ATP1A4 0.299 1 NA 1.31 1 NA NA NA NA NA LTS-023 chr1 160141269 160516659 375391 * c(SLAMF6, COPA, NCSTN, SUMO1P3, ATP1A4, NHLH1, DCAF8, VANGL2, PEX19, CASQ1, PEA15, CD84) 0.207085454898078 38 0.11445795627799 1.3954054782023 1097 0.662121898639256 5 4 1 -6.74689241551267 LTS-023 chr1 160516660 160517097 438 * CD84 0 1 NA 1.81345737919964 11 1.11348563284196 8 8 0 -5.76441056494286 LTS-023 chr1 160517098 161274648 757551 * c(TSTD1, MIR5187, KLHDC9, ITLN2, FCER1G, ARHGAP30, USP21, APOA2, LY9, MPZ, NDUFS2, NIT1, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SLAMF7, SLAMF1, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, CD84, DEDD, ADAMTS4, CD48, NR1I3) 0.129113829396654 42 0.136420798071047 1.37515664466659 1793 0.655205750971203 7 6 1 -6.79566723049037 LTS-023 chr1 161274649 161274905 257 * MPZ 0.304 1 NA 1.17590241342123 6 0.18511771029987 5 5 0 -5.76441319434919 LTS-023 chr1 161274906 161933457 658552 * c(DUSP12, FCRLB, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ATF6, CFAP126, HSPA6, HSPA7, MPZ, SDHC, RPL31P11, FCRLA, FCGR2C) 0.24536452469263 39 0.0782930840977916 1.33249024861237 861 0.454522057163753 5 4 1 -6.83895841248496 LTS-023 chr1 161933458 167095765 5162308 * c(MIR921, MIR3658, LOC100505795, MIR4654, GPA33, FMO9P, TADA1, SH2D1B, UHMK1, FAM78B, ALDH9A1, ATF6, OLFML2B, C1orf111, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POGK, RGS4, RXRG, UAP1, MIR556, UCK2, NUF2, RGS5, MAEL, DUSP27, NOS1AP) 0.216758307750743 58 0.102609462304341 1.47564477792948 2413 0.448957623612003 6 5 1 -6.81547318870607 LTS-023 chr1 167095766 167095823 58 * DUSP27 0 1 NA 2.05260336937316 3 1.48024502476223 9 9 0 -5.76441015452309 LTS-023 chr1 167095824 167392030 296207 * c(POU2F1, DUSP27) 0.0773719069305469 11 0.142561438111306 1.433360124509 335 0.942187848780617 10 9 1 -6.8149548616306 LTS-023 chr1 167392031 167394736 2706 * POU2F1 0.281 1 NA 1.64476621815359 57 0.298538391254176 7 7 0 -5.76441344650543 LTS-023 chr1 167394737 168282426 887690 * c(GPR161, MPC2, TIPRL, SFT2D2, POU2F1, ADCY10, DCAF6, ANKRD36BP1, CREG1, MPZL1, TBX19, CD247, RCSD1) 0.246535629137824 28 0.0960518695300182 1.43580074956041 986 0.62596834662498 5 4 1 -6.8365504150855 LTS-023 chr1 168282427 168282768 342 * TBX19 0 1 NA 1.91086097497054 7 1.54539227567446 8 8 0 -5.76441013910635 LTS-023 chr1 168282769 169094100 811332 * c(LOC100505918, DPT, ATP1B1, XCL1, XCL2, MIR557, LINC00626, TBX19) 0.208630469235812 9 0.115737610328037 1.4638820280624 153 0.770338738488351 5 4 1 -6.76539155879984 LTS-023 chr1 169094101 169159866 65766 * c(NME7, ATP1B1) 0.347 1 NA 1.65277586035546 67 1.23134267962377 7 7 0 -5.76441207193125 LTS-023 chr1 169159867 169512223 352357 * c(SLC19A2, F5, NME7, CCDC181, BLZF1) 0.29152932054443 12 0.0248649381964877 1.45952104327691 382 0.403179060201458 7 5 2 -6.75701779866649 LTS-023 chr1 169512224 169529881 17658 * F5 0 1 NA 1.47688351866773 47 0.439128261413733 6 6 0 -5.7644511766559 LTS-023 chr1 169529882 170632641 1102760 * c(MIR3119-1, MIR3119-2, METTL11B, F5, KIFAP3, LINC01142, C1orf112, SCYL3, SELE, SELL, SELP, METTL18, GORAB) 0.240207710264917 24 0.0840137044548798 1.43081454818139 738 0.409785169768922 5 4 1 -6.89724300834556 LTS-023 chr1 170632642 170699588 66947 * PRRX1 NA 0 NA 1.64288254908224 88 0.406544334898722 7 NA NA -5.76446216372802 LTS-023 chr1 170699589 170705130 5542 * PRRX1 NA 0 NA 1.267 1 NA NA NA NA NA LTS-023 chr1 170705131 170959029 253899 * c(PRRX1, MROH9) 0.025 1 NA 1.30181499775717 115 0.751366340154192 5 5 0 -5.76595182882273 LTS-023 chr1 170959030 172387577 1428548 * c(MIR1295A, MIR3120, DNM3OS, MIR1295B, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, FMO6P, MYOC, METTL13, PIGC, TOP1P1, MROH9, VAMP4) 0.0283870219888663 39 0.0180207183208362 1.19786927010459 1305 0.498282134773396 5 5 0 -6.76099830481072 LTS-023 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 0.957 1 NA NA NA NA NA LTS-023 chr1 172389836 176659599 4269764 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.0276764147921692 38 0.029162808794511 1.11309942099202 2378 0.956329727316322 5 5 0 -6.75846281205397 LTS-023 chr1 176659600 178888608 2229009 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.0223164088363943 43 0.0173017644201026 1.22587501028849 1293 0.514104027194949 5 5 0 -6.74379652351124 LTS-023 chr1 178888609 178888707 99 * RALGPS2 NA 0 NA 1.221 1 NA NA NA NA NA LTS-023 chr1 178888708 192336101 13447394 * c(GM140, GS1-279B7.1, MIR548F1, MIR3121, LHX4-AS1, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, BRINP3, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, IER5, PDC, PLA2G4A, SWT1, C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS16, RNASEL, NA NA NA NA NA NA NA NA NA LTS-023 RNF2, TOR3A, RGS18, SOAT1, TPR, CACNA1E, NPHS2, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.0271900232497875 189 0.023310599481393 1.13593452140904 7966 0.454497351996562 5 5 0 -6.88160392598979 LTS-023 NA NA NA NA LTS-023 chr1 192336102 196654324 4318223 * c(MIR1278, MIR4735, CFH, KCNT2, RGS21, GLRX2, UCHL5, RGS1, RGS2, RGS13, TROVE2, CDC73, B3GALT2) 0.0352947736595225 16 0.029303512303704 0.746381333289265 762 0.229656907021679 3 3 0 -6.74286173954927 LTS-023 chr1 196654325 196659237 4913 * c(CFHR4, CFH) 0.057 1 NA 0.893189296706972 13 0.497235021560898 4 4 0 -5.76450601193869 LTS-023 chr1 196659238 196758937 99700 * c(CFHR4, CFHR3, CFH, CFHR1) 0.114461611119074 7 0.0920703664647447 0.796355482017724 137 0.387572850116856 2 2 0 -7.03898395550047 LTS-023 chr1 196758938 196758941 4 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.418 1 NA NA NA NA NA LTS-023 chr1 196758942 196797383 38442 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.447067534469837 55 0.269963920771866 2 NA NA -5.77107460417111 LTS-023 chr1 196797384 196799601 2218 * c(CFHR4, CFHR1) NA 0 NA 0.789 1 NA NA NA NA NA LTS-023 chr1 196799602 196920178 120577 * c(CFHR4, CFHR1, CFHR2) 0.238252349167356 2 0.281428498912246 0.809265853682936 102 0.460624504123763 4 3 1 -6.75055662696522 LTS-023 chr1 196920179 196926973 6795 * CFHR2 0.04 1 NA 1.27282726724482 5 1.55280349690487 5 5 0 -5.76441489749604 LTS-023 chr1 196926974 201177278 4250305 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, KIF21B, CAMSAP2, CRB1, ZNF281, NR5A2, TMEM9, ASPM, GPR25, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, C1orf106, LHX9, PTPRC, ASCL5, CACNA1S, CFHR5, DDX59, IGFN1, KIF14) 0.0285209459186087 81 0.0306265337232478 0.770416360885795 3055 0.401455453866914 3 3 0 -6.81811609807012 LTS-023 chr1 201177279 201177538 260 * IGFN1 0.076 1 NA 0.703186926544819 7 0.240393031354508 3 3 0 -5.76441994261975 LTS-023 chr1 201177539 201197531 19993 * IGFN1 0.169193647317142 9 0.211661745349613 0.82091905927501 151 0.395909935016276 6 5 1 -6.75881905861299 LTS-023 chr1 201197532 201197808 277 * IGFN1 0.047 1 NA 0.697916248604266 7 0.231502236953092 3 3 0 -5.76442438747007 LTS-023 chr1 201197809 205744122 4546314 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, MFSD4A, SHISA4, ELF3, ELK4, PLEKHA6, NFASC, FMOD, PHLDA3, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, UBE2T, RPS10P7, KISS1, TMEM81, LAD1, NA, MDM4, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CDK18, CYB5R1, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, PRELP, NA NA NA NA NA NA NA NA NA LTS-023 IPO9, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, LINC01136, BTG2, NUAK2, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, TMEM183A, GPR37L1, LEMD1, SOX13, ZC3H11A, TMCC2) 0.0363570441909206 208 0.0254107980687594 0.782053416597978 7391 0.342533856620007 3 3 0 -6.78832841375622 LTS-023 NA NA NA NA LTS-023 chr1 205744123 205769055 24933 * c(SLC41A1, RAB29) NA 0 NA 0.772327526864875 103 0.126214849654736 3 NA NA -5.76545707725117 LTS-023 chr1 205769056 205770088 1033 * SLC41A1 NA 0 NA 1.496 1 NA NA NA NA NA LTS-023 chr1 205770089 205797303 27215 * c(PM20D1, SLC41A1) 0.279 1 NA 1.11526993397441 27 0.107835357779647 5 5 0 -5.7731755394004 LTS-023 chr1 205797304 205896647 99344 * c(SLC26A9, PM20D1, LOC284581) 0.269110592601863 10 0.100773453294451 1.13383552476691 185 0.561172882029473 4 3 1 -6.73817361817801 LTS-023 chr1 205896648 206224085 327438 * c(SLC26A9, FAM72A) 0.052 1 NA 1.08400135565114 53 0.32540962909135 4 4 0 -5.78438407219017 LTS-023 chr1 206224086 206225062 977 * AVPR1B 0.0435676634837153 3 0.0168027775481714 0.979575698950658 23 0.25398851550396 3 3 0 -6.77688591483516 LTS-023 chr1 206225063 206579936 354874 * c(CTSE, SRGAP2, C1orf186, AVPR1B, SRGAP2C) 0.153702128060128 9 0.162470082716104 0.852885629769244 166 0.351428678125006 5 4 1 -7.0190674159634 LTS-023 chr1 206579937 206603535 23599 * c(SRGAP2, SRGAP2C) 0.053 1 NA 0.770890835014662 19 0.23558863692452 3 3 0 -5.76466375074547 LTS-023 chr1 206603536 213448059 6844524 * c(MIR4260, MIR3122, IL24, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, SPATA45, FAM71A, CD55, EIF2D, SRGAP2, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, ATF3, NEK2, G0S2, IL20, DTL, PFKFB2, PIGR, PLXNA2, TMEM206, PPP2R5A, YOD1, BATF3, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, MIR205HG, FLVCR1-AS1, SNORA16B, TRAF5, C4BPA, NA NA NA NA NA NA NA NA NA LTS-023 C4BPB, SLC30A1, C1orf116, VASH2, TRAF3IP3, RASSF5, FCAMR, DYRK3, LINC00467, ANGEL2, FCMR, MAPKAPK2, CD34, IKBKE, LPGAT1) 0.0373690413607023 151 0.0252673405584412 0.764296851158811 5682 0.284634097410409 3 3 0 -6.7622215155961 LTS-023 NA NA NA NA LTS-023 chr1 213448060 213448130 71 * character(0) NA 0 NA 0.684138628713693 3 0.147801668912544 3 NA NA -5.76442497430764 LTS-023 chr1 214169771 214454784 285014 * c(PROX1, SMYD2) 0.171 1 NA 1.02977458032595 69 0.205020051833666 4 4 0 -5.77565045915174 LTS-023 chr1 214454785 216246214 1791430 * c(CENPF, KCNK2, KCTD3, SMYD2, PTPN14, USH2A) 0.230623237453727 33 0.117270472141813 1.10053318948695 1042 0.401191039910836 5 4 1 -6.79971929742261 LTS-023 chr1 216246215 216246488 274 * USH2A 0 1 NA 1.4695981153629 7 1.31422838125466 6 6 0 -5.76441018218079 LTS-023 chr1 216246489 216678292 431804 * c(ESRRG, USH2A) 0.136620928066371 10 0.170360271842417 1.19911869027613 240 0.599234452208306 6 5 1 -6.79716656958205 LTS-023 chr1 216678293 216692741 14449 * ESRRG 0.304 1 NA 1.12623428774038 51 0.268029524273638 5 5 0 -5.7649893104252 LTS-023 chr1 216692742 221509473 4816732 * c(LINC00210, BPNT1, LYPLAL1, SPATA17, EPRS, ESRRG, RAB3GAP2, RNU5F-1, HLX, C1orf140, MIR194-1, MIR215, MARK1, RRP15, MARC2, GPATCH2, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, C1orf115) 0.288208118786488 47 0.126709202572865 1.1350438804047 1828 0.382620455785592 5 4 1 -6.9991904274789 LTS-023 chr1 221509474 221874730 365257 * C1orf140 NA 0 NA 1.475 1 NA NA NA NA NA LTS-023 chr1 221874731 223807167 1932437 * c(DUSP10, BROX, CCDC185, MIA3, CAPN8, FAM177B, SUSD4, AIDA, TLR5, HHIPL2, DISP1, TAF1A) 0.263266116461185 18 0.232061160802365 1.44370477239842 1103 0.548408480371467 6 4 2 -6.79032910007003 LTS-023 chr1 223807168 223810318 3151 * CAPN8 0.46 1 NA 1.478344113634 7 0.740669163340698 6 6 0 -5.76441289788486 LTS-023 chr1 223810319 225155225 1344907 * c(MIR320B2, MIR4742, DNAH14, CNIH3, FBXO28, CNIH4, CAPN8, NVL, TP53BP2, WDR26, CAPN2, DEGS1) 0.437616531722279 27 0.0939090455276212 1.38758791325026 1043 0.365314699470812 6 3 3 -6.8521550959356 LTS-023 chr1 225155226 225211468 56243 * DNAH14 0 1 NA 1.68492207268805 31 0.54072496934497 7 7 0 -5.76442318897686 LTS-023 chr1 225211469 225496016 284548 * DNAH14 0.299485534935834 14 0.207890027986587 1.5338968125081 280 0.553532066349098 7 5 2 -6.73755241488844 LTS-023 chr1 225496017 225512398 16382 * DNAH14 0.484 1 NA 1.31641804830483 17 0.106843859412311 5 5 0 -5.77088271499358 LTS-023 chr1 225512399 226420722 908324 * c(LEFTY1, DNAH14, SDE2, EPHX1, LIN9, PYCR2, H3F3A, LBR, H3F3AP4, ENAH, ACBD3, SRP9, LEFTY2, MIXL1, TMEM63A) 0.463272895788148 13 0.0229039241962975 1.4345313863878 1107 0.391824412838394 6 3 3 -9.70045514049626 LTS-023 chr1 226420723 226475391 54669 * LIN9 0 1 NA 1.30002038548914 45 0.336391235968424 5 5 0 -5.76600632892872 LTS-023 chr1 226475392 226836584 361193 * c(PARP1, LIN9, ITPKB, STUM) 0.367615605635773 9 0.198545404826649 1.43929678562934 486 0.356734487181637 6 3 3 -6.74589472614205 LTS-023 chr1 226836585 226895483 58899 * ITPKB NA 0 NA 0.945 1 NA NA NA NA NA LTS-023 chr1 226895484 228363116 1467633 * c(NA, MIR3620, MIR5008, SNAP47, MRPL55, IBA57, GUK1, ZNF678, PRSS38, ITPKB, ARF1, ZNF847P, PSEN2, COQ8A, GJC2, JMJD4, WNT9A, C1orf35, CDC42BPA, WNT3A) 0.317070450237214 38 0.116896913285613 1.11000022267017 1223 0.348578578488355 5 3 2 -6.95714228238033 LTS-023 chr1 228363117 228399401 36285 * c(IBA57, C1orf145, OBSCN) 0.307444728852158 3 0.252023808399127 0.777726836355769 149 0.167226166026812 3 2 1 -6.7445473281442 LTS-023 chr1 228399402 228431095 31694 * c(C1orf145, OBSCN) 0.491 1 NA 0.864370646956901 75 0.166364771262179 4 4 0 -5.77469949099743 LTS-023 chr1 228431096 228492044 60949 * OBSCN 0.380856596292421 20 0.174934002592858 0.81925299368366 346 0.514890378528916 4 2 2 -6.74223066659104 LTS-023 chr1 228492045 228494709 2665 * OBSCN 0 1 NA 0.858836319503325 27 0.815839268637341 4 4 0 -5.76445003823815 LTS-023 chr1 228494710 228528296 33587 * OBSCN 0.246098822476349 12 0.236601057914077 0.854656741818465 164 0.460062471076627 4 3 1 -6.73859930290467 LTS-023 chr1 228528297 228528412 116 * OBSCN 0.476 1 NA 0.799283837252927 3 0.123721461355741 3 3 0 -5.76443079512219 LTS-023 chr1 228528413 231004044 2475632 * c(MIR4666A, SPHAR, CAPN9, CCSAP, HIST3H2BB, RNF187, AGT, COG2, ABCB10, GALNT2, TAF5L, TRIM17, NUP133, DUSP5P1, ACTA1, RHOU, RAB4A, PGBD5, TRIM11, HIST3H3, OBSCN, C1orf198, HIST3H2A, URB2) 0.450609333632007 69 0.0746183297901056 0.783376461806392 1996 0.205002015253582 3 2 1 -7.89803252958777 LTS-023 chr1 231004045 231067236 63192 * c(TTC13, C1orf198) 0.375448294453726 4 0.0232002155162404 1.06455603609069 88 0.227662319084265 5 3 2 -6.77723234644534 LTS-023 chr1 231067237 231067617 381 * TTC13 0 1 NA 1.33600881186479 7 0.764480527018495 6 6 0 -5.76441220880027 LTS-023 chr1 231067618 231360291 292674 * c(MIR1182, C1orf131, LOC149373, FAM89A, TRIM67, ARV1, TTC13) 0.190995624733788 11 0.181365928443024 1.14411581255931 363 0.526557858774514 5 4 1 -6.74558564793698 LTS-023 chr1 231360292 231377081 16790 * c(C1orf131, GNPAT) 0.306 1 NA 1.11775078166331 45 0.197240808058668 5 5 0 -5.76593874975395 LTS-023 chr1 231377082 231700952 323871 * c(TSNAX-DISC1, EXOC8, EGLN1, SNRPD2P2, TSNAX, SPRTN, GNPAT) 0.331948485888211 19 0.0876028051034229 1.09163039962103 515 0.310376841209789 6 4 2 -6.88261562565297 LTS-023 chr1 231700953 231717044 16092 * c(TSNAX-DISC1, TSNAX) 0 1 NA 1.45509802519875 21 0.388531674261909 6 6 0 -5.76442008182688 LTS-023 chr1 231717045 232176131 459087 * c(LINC00582, TSNAX-DISC1, DISC2, DISC1) 0.140766684613713 13 0.200463213582941 1.16085169907164 249 0.514051512818828 6 5 1 -6.80431689970152 LTS-023 chr1 232176132 232177047 916 * c(TSNAX-DISC1, DISC1) NA 0 NA 1.24976180883808 19 0.160996167910517 5 NA NA -5.76443577051055 LTS-023 chr1 232177048 232533712 356665 * SIPA1L2 NA 0 NA 0.661 1 NA NA NA NA NA LTS-023 chr1 232533713 232534447 735 * SIPA1L2 0.485 1 NA 0.881023433278957 15 0.175624789442341 4 4 0 -5.76456278479294 LTS-023 chr1 232534448 232945255 410808 * c(MAP10, SIPA1L2) 0.429654327610246 19 0.108646161018664 0.790906338572163 285 0.416364213033177 4 2 2 -6.85049988619427 LTS-023 chr1 232945256 233112168 166913 * c(MAP10, NTPCR) 0 1 NA 0.754552601641648 47 0.288983260240714 3 3 0 -5.76453268813846 LTS-023 chr1 233112169 233511547 399379 * c(PCNX2, NTPCR, MLK4) 0.290506386324515 10 0.247315273374785 0.81013922783725 440 0.280884292905891 3 2 1 -6.77731767386443 LTS-023 chr1 233511548 233518682 7135 * MLK4 0.479 1 NA 0.789639389108739 43 0.161712352120517 3 3 0 -5.7649153729783 LTS-023 chr1 233518683 235345346 1826664 * c(LINC00184, LINC01354, LINC01132, MIR4671, MIR4427, SLC35F3, RBM34, IRF2BP2, KCNK1, COA6, ARID4B, SNORA14B, TARBP1, MLK4, TOMM20) 0.43780818866495 31 0.0948406359982847 0.733358633893713 729 0.22494810266885 3 2 1 -7.31447936751082 LTS-023 chr1 235345347 235357460 12114 * c(MIR4753, ARID4B) 0.437 1 NA 0.753375702564048 25 0.108726062499599 3 3 0 -5.76445506045619 LTS-023 chr1 235357461 235714263 356803 * c(B3GALNT2, GNG4, ARID4B, TBCE, GGPS1) 0.220255917886415 9 0.238670158261238 0.76680868632567 319 0.293694316913399 3 2 1 -6.88308004961997 LTS-023 chr1 235714264 235747154 32891 * GNG4 0.462 1 NA 0.830030602340418 23 0.593226213110099 3 3 0 -5.76503357754015 LTS-023 chr1 235747155 236383889 636735 * c(MIR1537, LYST, GNG4, NID1, ERO1B, GPR137B) 0.44626746621271 25 0.0953637771902938 0.7507161545386 710 0.196263082546036 3 2 1 -7.39411443467199 LTS-023 chr1 236383890 236383910 21 * ERO1B 0.41 1 NA 0.416 1 NA NA NA NA NA LTS-023 chr1 236383911 236889352 505442 * c(LGALS8-AS1, EDARADD, LGALS8, HEATR1, ERO1B, ACTN2) 0.201133547852788 9 0.239571550434892 0.759405357011582 553 0.264364096765169 3 2 1 -6.93044699701021 LTS-023 chr1 236889353 236894647 5295 * ACTN2 0.417 1 NA 0.644091768175391 13 0.38741505272372 3 3 0 -5.76487475205185 LTS-023 chr1 236894648 236899015 4368 * ACTN2 NA 0 NA 0.754530408982373 8 0.0600700483958996 3 NA NA -5.76448391207322 LTS-023 chr1 236899016 237065405 166390 * c(MTR, ACTN2) 0.45230084999444 9 0.0332983149390142 0.814199266884479 397 0.356665370961695 4 2 2 -8.08791035882851 LTS-023 chr1 237065406 237066483 1078 * MTR 0 1 NA 0.755208293497035 21 0.345781667970935 3 3 0 -5.76441078598108 LTS-023 chr1 237066484 238050713 984230 * c(LOC100130331, MTR, ZP4, RYR2, MT1HL1) 0.271110389515744 26 0.231325451724156 0.831322240022587 714 0.451814873291519 4 3 1 -6.80792279418324 LTS-023 chr1 238050714 242687598 4636885 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, PLD5, FH, OPN3, LINC01139, MAP1LC3C, FMN2, ZP4, RGS7, GREM2, RPS7P5, KMO, EXO1) 0.310900853157245 27 0.136489420188386 1.11642722786952 1231 0.331835280212311 5 3 2 -7.03675434320987 LTS-023 chr1 243287734 243542256 254523 * c(MIR4677, SDCCAG8, CEP170) 0.440135340272012 2 0.0339411254969543 1.44012096786492 285 0.574344316522261 6 3 3 -7.58249934815113 LTS-023 chr1 243542257 243578927 36671 * SDCCAG8 NA 0 NA 1.608 1 NA NA NA NA NA LTS-023 chr1 243578928 243858986 280059 * c(AKT3, SDCCAG8) 0.17449335190443 4 0.232323588987429 1.74343758173876 156 0.545463697381678 7 6 1 -6.73785833627129 LTS-023 chr1 243858987 247016620 3157634 * c(AKT3, ZBTB18, COX20, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, EFCAB2) 0.281388884892244 45 0.151886164842974 1.15143412564742 1581 0.458849010357393 5 4 1 -6.86452469067778 LTS-023 chr1 247016621 247275315 258695 * c(ZNF670-ZNF695, AHCTF1, C1orf229, ZNF695, ZNF669, ZNF670) 0.243026688500876 12 0.187029956278278 1.00911239381015 379 0.314869842810072 4 3 1 -6.74301042039217 LTS-023 chr1 247275316 248224489 949174 * c(MIR3916, NLRP3, OR2B11, GCSAML, GCSAML-AS1, TRIM58, OR1C1, OR2L2, OR2L1P, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, C1orf229, OR11L1, OR2L8, OR2AK2, OR2L3, OR2W5, OR13G1, ZNF124, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496) 0.309649173712169 51 0.129930343329213 1.22044165877548 997 0.617181526783307 6 4 2 -6.79592241661826 LTS-023 chr1 248224490 248224569 80 * c(OR2L13, OR2L3) 0.146 1 NA 2.44164886846457 3 1.00822831409028 10 10 0 -5.76441019242676 LTS-023 chr1 248224570 248801506 576937 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, OR2M4, OR2T1, OR2L13, OR2T3, OR2T29, OR2M1P, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5) 0.173304932940423 16 0.163141132663307 1.15662144457166 416 0.943943134341882 6 5 1 -6.75264722750639 LTS-023 chr1 248801507 248801528 22 * character(0) 0.349 1 NA 1.5544836525629 5 0.491513987593436 7 7 0 -5.76441038977923 LTS-023 chr1 248801529 249208101 406573 * c(MIR3124, PGBD2, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.390218246192785 15 0.07269060330967 1.21385490864235 319 0.603206746885167 5 3 2 -6.74294125474616 LTS-023 chr1 249208102 249214134 6033 * PGBD2 NA 0 NA 1.29202624936505 69 0.304277180054289 5 NA NA -5.76459114387858 LTS-023 chr2 38824 39545 722 * FAM110C 0 1 NA 0.430297366466405 13 0.198255145113822 2 2 0 -5.76478043222574 LTS-023 chr2 39546 677295 637750 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0.108671382481052 10 0.0526772141337114 0.352904191696491 344 0.119235331205742 1 1 0 -7.72491882737652 LTS-023 chr2 677296 677484 189 * TMEM18 NA 0 NA 0.295381321787682 5 0.0389653692398776 1 NA NA -5.76447325393419 LTS-023 chr2 677485 905264 227780 * LINC01115 NA 0 NA 0.719 1 NA NA NA NA NA LTS-023 chr2 905265 1093965 188701 * SNTG2 0.413 1 NA 0.844303047384128 7 0.116468062248024 3 3 0 -5.88710891403364 LTS-023 chr2 1093966 3691548 2597583 * c(RNASEH1-AS1, MYT1L, RNASEH1, TRAPPC12, SNTG2, ADI1, RPS7, TPO, TSSC1, MYT1L-AS1, PXDN, COLEC11) 0.386309602668829 37 0.149527258053175 0.706882688843537 1112 0.229641526031517 3 2 1 -6.87760571670966 LTS-023 chr2 3691549 3749084 57536 * c(ALLC, COLEC11) 0.434 1 NA 0.691870293318991 55 0.13933299985461 3 3 0 -5.77483027446337 LTS-023 chr2 3749085 6980764 3231680 * c(LINC01304, CMPK2, LINC01105, LOC400940, LINC00487, ALLC, SOX11, LINC01249) 0.176861128759228 9 0.230856617357566 0.766655960089536 275 0.370559978085858 3 3 0 -6.94913400975959 LTS-023 chr2 6980765 6988669 7905 * CMPK2 0.481 1 NA 0.775436005670189 9 0.25699610891996 3 3 0 -5.76451062110322 LTS-023 chr2 6988670 10282147 3293478 * c(LOC100506274, YWHAQ, CMPK2, MBOAT2, CYS1, IAH1, GRHL1, LINC00298, LINC00299, ID2, C2orf48, RNF144A-AS1, CPSF3, KIDINS220, RRM2, ADAM17, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, RNF144A) 0.422523996427224 53 0.0975996346265973 0.689303125270373 1926 0.260444724515957 3 2 1 -7.31256803836427 LTS-023 chr2 10282148 10332793 50646 * c(MIR4261, C2orf48) 0 1 NA 0.708611819663397 9 0.226360209499029 3 3 0 -5.76605723001357 LTS-023 chr2 10332794 10815936 483143 * c(SNORA80B, MIR4261, HPCAL1, C2orf48, ODC1, NOL10) 0.21891501893274 11 0.235645959400577 0.690868647144583 273 0.28800758079717 3 2 1 -6.90965977761009 LTS-023 chr2 10815937 10908893 92957 * c(ATP6V1C2, NOL10) 0.469 1 NA 0.598014646845612 45 0.174008527597838 2 2 0 -5.80326488431664 LTS-023 chr2 10908894 11320856 411963 * c(PDIA6, C2orf50, PQLC3, ATP6V1C2, FLJ33534, KCNF1) 0.422383729482487 24 0.0332935723003967 0.665677422133923 396 0.290124823340794 2 1 1 -7.25218958878883 LTS-023 chr2 11320857 11338633 17777 * ROCK2 0 1 NA 0.689424064902838 83 0.225135965709895 3 3 0 -5.76576190786372 LTS-023 chr2 11338634 13554969 2216336 * c(MIR3125, MIR4262, LOC100506474, MIR4429, LINC00570, E2F6, LPIN1, NTSR2, TRIB2, ROCK2, GREB1) 0.237847778251605 14 0.226712009308804 0.702717800080886 820 0.196867879342147 3 2 1 -6.97865627938167 LTS-023 chr2 13554970 15448311 1893342 * c(FAM84A, NBAS) 0.315 1 NA 0.728483722246094 213 0.19272553043741 3 3 0 -5.78354151248321 LTS-023 chr2 15448312 18113294 2664983 * c(MYCNOS, DDX1, MSGN1, GEN1, KCNS3, MYCN, NBAS, RAD51AP2, VSNL1, SMC6, FAM49A) 0.386752249735832 11 0.131175316414193 0.727555754841193 997 0.45277547019617 3 2 1 -6.81238788708965 LTS-023 chr2 18113295 25314186 7200892 * c(NT5C1B-RDH14, MIR4757, ADCY3, KLHL29, OSR1, TTC32, GDF7, UBXN2A, FKBP1B, EFR3B, PUM2, APOB, PFN4, FAM228B, KCNS3, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, ITSN2, DNAJC27, SF3B6, ATAD2B, WDR35, RDH14, LDAH, SDC1, HS1BP3, LOC645949, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, NT5C1B, TP53I3, LAPTM4A) 0.386446811074162 95 0.160950680683686 0.769953475984086 3501 0.221394058883733 3 2 1 -6.86164363795789 LTS-023 chr2 25314187 25358503 44317 * EFR3B 0 1 NA 0.752259971362618 53 0.566205821813961 3 3 0 -5.76441427600909 LTS-023 chr2 25358504 27800515 2442012 * c(OST4, MIR1301, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, EMILIN1, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, DNMT3A, DTNB, KRTCAP3, MAPRE3, EFR3B, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, KCNK3, KHK, KIF3C, MPV17, ATRAID, POMC, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, AGBL5, FNDC4, UCN, SLC30A3, CAD, C2orf16, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17 NA NA NA NA NA NA NA NA NA LTS-023 ) 0.285155397354316 104 0.216262705705386 0.768984557963682 4713 0.312377904204998 3 2 1 -6.78459703595352 LTS-023 NA NA NA NA LTS-023 chr2 27800516 27801403 888 * C2orf16 0.465 1 NA 0.766586318008055 19 0.196363116914075 3 3 0 -5.76441941604066 LTS-023 chr2 27801404 30865048 3063645 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, LCLAT1, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, RBKS, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.416404811801965 88 0.119094239266815 0.752671451838272 2550 0.249925677050107 3 2 1 -6.96958729881824 LTS-023 chr2 30865049 30866042 994 * LCLAT1 0.221 1 NA 0.374039169367101 26 0.350032596284315 1 1 0 -5.76475222519442 LTS-023 chr2 30866043 31621553 755511 * c(LCLAT1, EHD3, CAPN14, XDH, GALNT14, CAPN13) 0.267451951677074 30 0.218764808365766 0.8133629444433 684 0.396739297004974 3 2 1 -6.81985107956421 LTS-023 chr2 31621554 31637598 16045 * XDH 0.454 1 NA 0.80841339070791 19 0.332984299719445 3 3 0 -5.76495271873991 LTS-023 chr2 31637599 36778169 5140571 * c(LOC100271832, LOC100288911, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, LTBP1, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, YIPF4, DPY30) 0.436081495676923 31 0.117779381878574 0.78301326632622 1852 0.207995302524159 3 2 1 -7.2592209735875 LTS-023 chr2 36778170 36943419 165250 * c(CRIM1, VIT, FEZ2) 0.477 1 NA 0.684272779016904 91 0.151552692352259 3 3 0 -5.79739893136015 LTS-023 chr2 36943420 36986502 43083 * VIT 0 1 NA 0.773851100936223 29 0.708135900235238 3 3 0 -5.76447460001264 LTS-023 chr2 36986503 37442150 455648 * c(CEBPZOS, CEBPZ, GPATCH11, SULT6B1, VIT, HEATR5B, EIF2AK2, STRN) 0.315506033977143 10 0.239720578081139 0.749038174377066 889 0.219171086869069 3 2 1 -6.73954358990578 LTS-023 chr2 37442151 37869494 427344 * c(CEBPZ, CDC42EP3, PRKD3, QPCT, NDUFAF7) 0.387 1 NA 0.725199566707332 364 0.167684932662854 3 3 0 -5.77237230415607 LTS-023 chr2 37869495 40657509 2788015 * c(SLC8A1-AS1, ARHGEF33, RMDN2-AS1, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, CYP1B1-AS1, CDKL4, LOC375196, ATL2, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.413557130178432 54 0.13391568970694 0.740815774881803 1899 0.21523270373257 3 2 1 -6.90935629540036 LTS-023 chr2 42162923 64861821 22698899 * c(SNORA70B, MIR216B, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3682, MIR4434, MIR4432, MIR548AD, MIR5192, LRPPRC, CCT4, B3GNT2, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, LINC00309, OXER1, KCNG3, TMEM17, EPAS1, EFEMP1, PSME4, EHBP1, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, LGALSL, MSH6, FOXN2, LOC339803, C2orf74, LOC339807, NA NA NA NA NA NA NA NA NA LTS-023 PRORSD1P, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, MIR216A, MIR217, EPCAM, MDH1, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, DYNC2LI1, PEX13, PIGF, BCL11A, AFTPH, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, UGP2, VRK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 XPO1, CAMKMT, FBXO11, CALM2, FAM161A, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, SERTAD2, ACYP2) 0.366680254661143 237 0.127404433827842 0.624248103274751 10349 0.300839495494524 3 2 1 -9.64292560343508 LTS-023 NA NA NA NA LTS-023 chr2 64861822 69476118 4614297 * c(MIR3126, MIR4778, ACTR2, C1D, PROKR1, WDR92, GKN2, APLF, SPRED2, CEP68, CNRIP1, BMP10, LOC400958, MEIS1, PLEK, ETAA1, PPP3R1, FBXO48, GKN1, PNO1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, ANTXR1, SERTAD2, ARHGAP25) 0.375781369322071 55 0.132099691973633 0.578705195435004 1882 0.19852775303768 2 1 1 -7.53142678507007 LTS-023 chr2 69476119 69709079 232961 * c(AAK1, GFPT1, NFU1, ANTXR1) 0.378133280137271 8 0.0597829407105405 0.850762300510407 260 0.310961856042306 4 2 2 -6.8179841167894 LTS-023 chr2 69709080 69709919 840 * AAK1 0.28 1 NA 0.897274738213841 11 0.0558522401276146 4 4 0 -5.76557915474734 LTS-023 chr2 69709920 70676098 966179 * c(SNORA36C, LOC100133985, SNRNP27, ASPRV1, AAK1, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, C2orf42, GMCL1, SNRPG, TGFA, TIA1, FAM136A) 0.265097299856544 28 0.125471175466782 0.924938961463684 1077 0.399148101806488 4 3 1 -6.74391919411958 LTS-023 chr2 70676099 70677404 1306 * TGFA 0 1 NA 0.835414212483094 29 0.781423179032375 3 3 0 -5.76442619448426 LTS-023 chr2 70677405 70781005 103601 * TGFA 0.00393500680294833 3 0.00692820323027551 0.859289544071768 62 0.709544751114368 20 20 0 -7.18234830016991 LTS-023 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.379 1 NA NA NA NA NA LTS-023 chr2 70781031 71748116 967086 * c(MPHOSPH10, TEX261, ADD2, CLEC4F, VAX2, ZNF638, FIGLA, PAIP2B, CD207, ATP6V1B1, NAGK, TGFA, OR7E91P, ANKRD53, DYSF, MCEE) 0.0946821603909739 29 0.152314621236323 0.993515284971748 1241 0.476329144962737 4 4 0 -6.83985052364971 LTS-023 chr2 71748117 71791332 43216 * DYSF 0.398 1 NA 0.991332333314458 56 0.174390977366987 4 4 0 -5.76459103609607 LTS-023 chr2 71791333 73493044 1701712 * c(SMYD5, CCT7, FBXO41, EMX1, EXOC6B, RAB11FIP5, NOTO, CYP26B1, SPR, DYSF, PRADC1, SFXN5) 0.204171390075589 31 0.162313436328923 1.0135789294189 1318 0.424719584620659 4 3 1 -6.82403554281877 LTS-023 chr2 73493045 73493108 64 * FBXO41 NA 0 NA 0.803 1 NA NA NA NA NA LTS-023 chr2 73493109 75196665 1703557 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.257826472961108 87 0.130859015981396 0.934413738103991 3146 0.362058633932362 4 3 1 -6.75032667864478 LTS-023 chr2 75196666 75196728 63 * POLE4 NA 0 NA 1.101 1 NA NA NA NA NA LTS-023 chr2 75196729 80646810 5450082 * c(SNAR-H, MIR4264, MIR5000, REG3G, CTNNA2, LRRTM1, REG3A, POLE4, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.274245330414832 15 0.150966032130221 1.04767635722508 696 0.416078317816609 4 3 1 -6.82599557831263 LTS-023 chr2 80646811 80771996 125186 * CTNNA2 NA 0 NA 0.656 1 NA NA NA NA NA LTS-023 chr2 80771997 80875881 103885 * CTNNA2 NA 0 NA 0.68799386044985 75 0.213471087562755 3 NA NA -5.77364594184565 LTS-023 chr2 84517922 87085504 2567583 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.293936136024004 109 0.119974058527974 1.00673476005317 3211 0.35542114214434 4 3 1 -6.77844395002137 LTS-023 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.778 1 NA NA NA NA NA LTS-023 chr2 87092741 87407206 314466 * c(ANAPC1P1, LOC285074, RMND5A) 0.236939811860736 4 0.197386887440208 0.716794142036303 79 0.627785972962204 4 3 1 -6.79078287760582 LTS-023 chr2 87407207 87408164 958 * RMND5A NA 0 NA 0.292 1 NA NA NA NA NA LTS-023 chr2 87408165 87424547 16383 * RMND5A NA 0 NA 0.370424902218794 60 0.388567970262764 1 NA NA -5.76865794973135 LTS-023 chr2 87424548 87424567 20 * RMND5A NA 0 NA 0.73 1 NA NA NA NA NA LTS-023 chr2 87424568 89953068 2528501 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.251916714352955 19 0.156451027406688 1.02171606343866 789 0.528327260648347 4 3 1 -6.74815232401639 LTS-023 chr2 89953069 89975746 22678 * character(0) NA 0 NA 1.458 1 NA NA NA NA NA LTS-023 chr2 89975747 91937761 1962015 * LOC654342 0.340427526083552 12 0.150838766016344 1.38280660044804 192 1.49143327045983 6 4 2 -6.73451451276802 LTS-023 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.04174689041212 16 0.257717028282313 4 NA NA -5.76506880096379 LTS-023 chr2 95537183 95537572 390 * c(TEKT4, LOC442028) 0.415 1 NA 1.13048697897244 9 0.215262888373986 5 5 0 -5.76443175366325 LTS-023 chr2 95537573 96262166 724594 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.0994490367228756 9 0.176972063080903 1.11428034771872 681 0.465561258633378 5 5 0 -6.8515515156464 LTS-023 chr2 96262167 96514594 252428 * TRIM43 0.283 1 NA 1.09743116487564 70 0.39129685664557 5 5 0 -5.77336000596023 LTS-023 chr2 96514595 96646413 131819 * character(0) 0.376110394136509 33 0.0631223709323502 0.864052007164295 100 0.36335055561073 5 3 2 -6.80265803623923 LTS-023 chr2 96646414 96680935 34522 * FAHD2CP 0 1 NA 0.624967778881055 23 0.680795021765053 3 3 0 -5.76583075416065 LTS-023 chr2 96680936 97001485 320550 * c(GPAT2, ITPRIPL1, ADRA2B, DUSP2, SNRNP200, NCAPH, STARD7-AS1, ASTL, TMEM127, STARD7, FAHD2CP, CIAO1) 0.278942680729122 18 0.133083110795792 1.03474372471774 811 0.392560606690167 4 3 1 -6.74362988862068 LTS-023 chr2 97001486 97009958 8473 * NCAPH 0 1 NA 1.10401869252771 37 0.287374508452138 5 5 0 -5.76489990730286 LTS-023 chr2 97009959 97372010 362052 * c(ARID5A, NCAPH, KANSL3, LMAN2L, FER1L5, NEURL3) 0.135576142882407 11 0.159343026204475 1.0710847336963 585 0.390480464590469 5 4 1 -6.89980483912863 LTS-023 chr2 97372011 97400324 28314 * LMAN2L 0.232 1 NA 1.05534177259702 51 0.162389973611094 4 4 0 -5.76824070932391 LTS-023 chr2 97400325 97827787 427463 * c(MIR3127, FAHD2B, ANKRD23, CNNM4, CNNM3, ANKRD36, ANKRD39, FAM178B, SEMA4C, LMAN2L) 0.265423148831887 11 0.17599049561114 1.05825264805784 669 0.297875559162636 4 3 1 -6.75142444552244 LTS-023 chr2 97827788 97827790 3 * ANKRD36 0.429 1 NA 0.737 1 NA NA NA NA NA LTS-023 chr2 97827791 98128275 300485 * c(ANKRD36, ANKRD36B) 0.319441915453923 5 0.180354650619273 0.657216377013998 48 0.477134303903369 3 2 1 -6.75407847456452 LTS-023 chr2 98128276 98162127 33852 * ANKRD36B NA 0 NA 9.139 1 NA NA NA NA NA LTS-023 chr2 98162128 100722098 2559971 * c(ACTR1B, TXNDC9, MGAT4A, CNGA3, LYG1, MITD1, COX5B, C2orf15, VWA3B, TMEM131, LYG2, UNC50, KIAA1211L, INPP4A, AFF3, COA5, MRPL30, REV1, LIPT1, ANKRD36B, LINC01125, ZAP70, TSGA10, EIF5B) 0.286178683477697 39 0.150441540872104 1.07874840469383 2215 0.360369899109524 4 3 1 -6.85869145870073 LTS-023 chr2 100722099 100722553 455 * AFF3 NA 0 NA 1.03002418593932 12 0.190802670554972 4 NA NA -5.76443103714787 LTS-023 chr2 100722554 100891459 168906 * c(LONRF2, AFF3) 0.058 1 NA 0.779069504900129 37 0.168030996890205 3 3 0 -5.7707605303409 LTS-023 chr2 100891460 101437601 546142 * c(NMS, LONRF2, NPAS2, PDCL3, CHST10) 0.0388703862262819 31 0.0201251995248241 0.76226178745236 479 0.29183065163793 3 3 0 -6.73465516762495 LTS-023 chr2 101437602 101437716 115 * NPAS2 NA 0 NA 0.5859422863406 3 0.0519615242270663 2 NA NA -5.76480793857301 LTS-023 chr2 101437717 101521060 83344 * NPAS2 NA 0 NA 1.645 1 NA NA NA NA NA LTS-023 chr2 101521061 101564628 43568 * NPAS2 0.389 1 NA 1.08341134852126 25 0.232391028226134 4 4 0 -5.76957936681767 LTS-023 chr2 101564629 101656726 92098 * c(TBC1D8, NPAS2, RPL31) 0.255225203593787 12 0.149971790276665 1.08958830720089 328 0.367982489820102 4 3 1 -6.74047918375284 LTS-023 chr2 101656727 101676007 19281 * TBC1D8 NA 0 NA 1.09568396383245 17 0.249957967054698 5 NA NA -5.76614396964881 LTS-023 chr2 101676008 101706617 30610 * TBC1D8 NA 0 NA 0.803 1 NA NA NA NA NA LTS-023 chr2 101706618 101893240 186623 * c(TBC1D8, RNF149, CNOT11, SNORD89) 0.025 1 NA 0.758569178544088 91 0.195148989761997 3 3 0 -5.76510901610065 LTS-023 chr2 101893241 105990000 4096760 * c(LOC100287010, LINC01158, MIR4772, MIR5696, GPR45, TMEM182, LINC01102, CREG2, FHL2, RNF149, LINC01114, IL1R1, SLC9A4, POU3F3, MRPS9, SLC9A2, RFX8, IL1R2, C2orf49, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4) 0.0387458962244833 66 0.0342390506207837 0.773637784549505 1970 0.318970950388473 3 3 0 -6.76267313579025 LTS-023 chr2 105990001 106016018 26018 * FHL2 NA 0 NA 0.77800577247958 45 0.244794962647056 3 NA NA -5.76484200184609 LTS-023 chr2 106016019 106471433 455415 * c(FHL2, LOC285000, NCK2) NA 0 NA 1.395 1 NA NA NA NA NA LTS-023 chr2 106471434 106713586 242153 * c(UXS1, NCK2, C2orf40) 0.364 1 NA 1.13303685939518 107 0.19305295832684 5 5 0 -5.77997116245758 LTS-023 chr2 106713587 107460162 746576 * c(PLGLA, RGPD3, UXS1, ST6GAL2) 0.232075042726369 10 0.163262569704959 1.15761830318034 276 0.469167457736797 5 4 1 -6.7429225854063 LTS-023 chr2 107460163 107460262 100 * ST6GAL2 NA 0 NA 1.00821032797548 2 0.135057395206631 4 NA NA -5.76441335542091 LTS-023 chr2 107460263 108507311 1047049 * c(RGPD4, RGPD4-AS1, ST6GAL2) 0.059 1 NA 0.765161221536763 7 0.414752823693709 3 3 0 -5.76652542016055 LTS-023 chr2 108507312 111995955 3488644 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, SULT1C2P1, CCDC138, LINC00116, SULT1C4, RGPD4, SH3RF3, LIMS1, SULT1C3, NPHP1, MIR4435-2HG, ACOXL, RANBP2, SLC5A7, SOWAHC, SULT1C2, BUB1, MALL, GCC2) 0.0401969440455413 40 0.030654808883637 0.760499216707178 1827 0.251566184674525 3 3 0 -6.74452850898878 LTS-023 chr2 111995956 112631010 635055 * c(MIR4435-2HG, ANAPC1) 0 1 NA 1.16243640888715 163 0.563388522093978 5 5 0 -5.7661108582694 LTS-023 chr2 112631011 112753020 122010 * c(MERTK, ANAPC1) 0.381 1 NA 1.17676087333586 73 0.153210741145767 5 5 0 -5.76642106066129 LTS-023 chr2 112753021 115200415 2447395 * c(LOC100499194, MIR4782, ACTR3, MERTK, RABL2A, RPL23AP7, FBLN7, TTL, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, ZC3H6, FLJ42351, LINC01191, IL36G, DPP10, FAM138B, PAX8-AS1, SLC20A1, RGPD8, PAX8, SLC35F5, POLR1B, CHCHD5, ZC3H8, IL1F10, DDX11L2, TMEM87B) 0.318356993108981 80 0.126303732142659 1.1399408022008 2374 0.432005599389195 5 3 2 -6.90218027785793 LTS-023 chr2 115200416 116601511 1401096 * c(DPP10-AS1, DPP10) 0.304383625849441 6 0.24549412756045 1.67049212182753 182 0.884463292835963 7 5 2 -6.73442010885758 LTS-023 chr2 116601512 118675578 2074067 * c(CCDC93, DPP10, DDX18) 0.482 1 NA 1.57300026813685 193 0.766153018815759 7 7 0 -5.77155783813022 LTS-023 chr2 118675579 120980428 2304850 * c(C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, INSIG2, CCDC93, STEAP3, EPB41L5, PTPN4, SCTR, TMEM185B, TMEM177, MARCO) 0.403806370496106 31 0.140860160961986 1.49605073146969 1435 0.570582846098405 6 3 3 -6.7414157367609 LTS-023 chr2 120980429 121109104 128676 * c(INHBB, RALB, TMEM185B) 0 1 NA 1.45253866441078 131 0.431301432889943 6 6 0 -5.76445774744679 LTS-023 chr2 121109105 121974796 865692 * c(GLI2, TFCP2L1, INHBB, LINC01101) 0.0952557966393677 10 0.207529810442313 1.681523856743 204 0.983705784477439 8 7 1 -6.76550701773946 LTS-023 chr2 121974797 121975329 533 * TFCP2L1 0.493 1 NA 1.51203577515538 11 0.251023251367822 6 6 0 -5.76442323550952 LTS-023 chr2 121975330 130739891 8764562 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, LOC389033, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, TSN, SAP130, AMMECR1L, RAB6C, NIFK, SFT2D3, HS6ST1) 0.390626372031949 103 0.16589244828348 1.44961787898856 3128 0.561829183093101 6 3 3 -6.73509800780186 LTS-023 chr2 130739892 130897612 157721 * c(MED15P9, FAR2P1, POTEF, RAB6C, CCDC74B) 0 1 NA 1.71567478791084 17 0.966517916208976 7 7 0 -5.76449370532859 LTS-023 chr2 130897613 130948303 50691 * c(SMPD4, MZT2B, CCDC74B) 0.240481301880352 9 0.214518647208116 1.47005552657722 243 1.45335117869264 9 7 2 -6.73624123358602 LTS-023 chr2 130948304 130949303 1000 * character(0) 0.461 1 NA 1.59695026937585 5 0.89051642320622 7 7 0 -5.76441153145024 LTS-023 chr2 130949304 131769237 819934 * c(CYP4F30P, FAR2P2, TUBA3E, AMER3, PTPN18, GPR148, ARHGEF4, CFC1, POTEI, CFC1B, POTEJ, CCDC115, IMP4) 0.398979211640568 29 0.166047451524061 1.47656313816804 629 0.532562358908887 6 3 3 -6.7344163048832 LTS-023 chr2 131769238 131803288 34051 * ARHGEF4 0 1 NA 1.52649418129112 57 1.00716105824397 6 6 0 -5.76448354070099 LTS-023 chr2 131803289 132286131 482843 * c(MIR4784, TUBA3D, FAM168B, LOC150776, WTH3DI, LINC01120, NOC2LP2, LOC440910, POTEE, ARHGEF4, PLEKHB2, MZT2A, CCDC74A) 0.134784371530975 9 0.177995084201784 1.37526690114932 505 0.542003146786831 6 5 1 -6.77525228710971 LTS-023 chr2 132286132 132494171 208040 * c(C2orf27A, CCDC74A) 0.492 1 NA 1.17116508279885 81 0.71597057430568 5 5 0 -5.76463168167288 LTS-023 chr2 132494172 137852627 5358456 * c(CCNT2-AS1, MIR663B, MIR3679, LOC100507600, LYPD1, ACMSD, DARS, RAB3GAP1, UBXN4, R3HDM1, GPR39, C2orf27A, NCKAP5, LCT, MIR128-1, C2orf27B, MCM6, MGAT5, ANKRD30BL, CXCR4, MAP3K19, THSD7B, TMEM163, ZRANB3, CCNT2) 0.416493467521374 62 0.136197996445814 1.4892422020193 2113 0.449313265783649 6 3 3 -6.7658454412583 LTS-023 chr2 137852628 137852698 71 * THSD7B 0.486 1 NA 2.717 1 NA NA NA NA NA LTS-023 chr2 137852699 141459964 3607266 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.412132367859209 25 0.156401726333183 1.61658728281318 767 0.665995808731072 7 4 3 -6.74821594524852 LTS-023 chr2 141459965 141473504 13540 * LRP1B 0 1 NA 1.18103985583486 7 0.665376513533432 5 5 0 -5.76441882881555 LTS-023 chr2 141473505 142889262 1415758 * LRP1B 0.347465503676492 5 0.159561900214306 1.60352911041019 217 0.334858455639384 7 4 3 -6.78951246351946 LTS-023 chr2 142889263 148602458 5713196 * c(ZEB2-AS1, TEX41, LRP1B, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.214145778238411 3 0.173854345166675 0.99400067746302 463 0.285593864403764 4 3 1 -6.79661222667093 LTS-023 chr2 148602459 150330555 1728097 * c(LYPD6, LYPD6B, EPC2, KIF5C, ORC4, MBD5, ACVR2A) 0.195986995896435 11 0.184991252864463 1.18423571211402 867 0.366617094031418 5 4 1 -6.74235427179389 LTS-023 chr2 150330556 150433145 102590 * c(LYPD6, MMADHC) NA 0 NA 1.40539589765685 41 1.41904446766813 6 NA NA -5.76442531235054 LTS-023 chr2 150433146 150436056 2911 * MMADHC NA 0 NA 0.837 1 NA NA NA NA NA LTS-023 chr2 150436057 151900223 1464167 * c(MMADHC, RND3) 0.376 1 NA 1.12395340716998 107 0.244553596315082 5 5 0 -5.83819229372632 LTS-023 chr2 151900224 153497504 1597281 * c(MIR4773-1, MIR4773-2, STAM2, FMNL2, ARL5A, RBM43, NEB, RIF1, TNFAIP6, CACNB4, NMI) 0.332431694869844 53 0.117160391470253 1.09184873125029 1937 0.334335677817348 5 3 2 -6.91892513005414 LTS-023 chr2 153497505 153499847 2343 * FMNL2 NA 0 NA 1.733 1 NA NA NA NA NA LTS-023 chr2 153499848 153509744 9897 * c(FMNL2, PRPF40A) 0 1 NA 1.55098099391003 85 0.268130095101538 7 7 0 -5.76484058200471 LTS-023 chr2 153509745 162356090 8846346 * c(TANK, LOC100144595, LY75-CD302, MIR4785, PSMD14, TBR1, GALNT5, GALNT13, ACVR1C, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, GPD2, AHCTF1P1, BAZ2B, ITGB6, KCNJ3, LY75, NR4A2, CCDC148-AS1, PRPF40A, RPRM, ERMN, RBMS1, MARCH7, PKP4, TANC1, ACVR1, DAPL1, CYTIP, CD302) 0.304365371338591 87 0.139284298269594 1.1011581826528 3301 0.335409359673983 5 3 2 -7.28220981473336 LTS-023 chr2 162356091 162567236 211146 * c(AHCTF1P1, SLC4A10) 0 1 NA 1.08133350728511 77 0.478501372944503 4 4 0 -5.77010133593558 LTS-023 chr2 162567237 163374411 807175 * c(DPP4, FAP, GCA, GCG, SLC4A10, IFIH1, KCNH7) 0.157496872374074 6 0.187351808104432 1.0756927229423 735 0.237516791723896 5 4 1 -6.90139130317295 LTS-023 chr2 163374412 163374414 3 * KCNH7 NA 0 NA 1.351 1 NA NA NA NA NA LTS-023 chr2 163374415 163694958 320544 * KCNH7 0 3 0 1.31686866126371 19 1.01047370918746 0 0 0 -Inf LTS-023 chr2 163694959 164459422 764464 * KCNH7 0.377 1 NA 1.16837303075958 25 0.240739831907116 5 5 0 -5.77278404936562 LTS-023 chr2 164459423 166731075 2271653 * c(SNORA70F, LOC100506124, SLC38A11, COBLL1, GALNT3, GRB14, FIGN, SCN2A, SCN3A, TTC21B, CSRNP3) 0.258213307441586 40 0.161152189575966 1.20348659334091 1487 0.419941095979671 5 4 1 -6.77537484036135 LTS-023 chr2 166731076 166731126 51 * TTC21B NA 0 NA 0.973 1 NA NA NA NA NA LTS-023 chr2 166731127 172340029 5608903 * c(NA, TTC21B-AS1, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CCDC173, UBR3, MYO3B, KLHL23, CERS6, GAD1, GORASP2, STK39, METTL5, SP5, LRP2, LINC01124, PHOSPHO2, SPC25, G6PC2, SCN1A, SCN7A, SCN9A, SSB, FASTKD1, TTC21B, METTL8, DCAF17, ABCB11, B3GALT1, PPIG, TLK1) 0.279119901717237 106 0.147776787067681 1.10687615103318 4255 0.354914598014576 5 4 1 -7.03699949376823 LTS-023 chr2 172340030 172340097 68 * DCAF17 0.454 1 NA 0.898 1 NA NA NA NA NA LTS-023 chr2 172340098 179264161 6924064 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, HOXD-AS2, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, HAGLR, MIR10B, NFE2L2, PDE11A, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, NA NA NA NA NA NA NA NA NA LTS-023 SLC25A12, RAPGEF4-AS1, TTC30A, CIR1) 0.329270101488854 108 0.118897500804151 1.10900847091888 4333 0.360433219619742 5 3 2 -7.06504614730639 LTS-023 NA NA NA NA LTS-023 chr2 179264162 179296161 32000 * c(MIR548N, PRKRA) NA 0 NA 0.729 1 NA NA NA NA NA LTS-023 chr2 179296162 179315937 19776 * c(MIR548N, PRKRA) NA 0 NA 0.839508434897558 63 0.207094724178058 3 NA NA -5.76818193246855 LTS-023 chr2 179315938 179317968 2031 * c(MIR548N, DFNB59, PRKRA) NA 0 NA 1.055 1 NA NA NA NA NA LTS-023 chr2 179317969 179583496 265528 * c(MIR548N, TTN-AS1, DFNB59, FKBP7, PLEKHA3, TTN) 0.342906725090864 46 0.112643192820911 1.16533440210181 2425 0.298377041748463 5 3 2 -6.8026560575949 LTS-023 chr2 179583497 179585900 2404 * TTN 0 1 NA 1.09204702147549 45 0.522520431189156 5 5 0 -5.76446305727934 LTS-023 chr2 179585901 179739242 153342 * c(CCDC141, TTN) 0.208758212639861 16 0.177608828140195 1.17567529566188 902 0.467113264191993 5 4 1 -6.73413177993433 LTS-023 chr2 179739243 179914640 175398 * CCDC141 0.374 1 NA 1.04793790820503 123 0.28406817252673 4 4 0 -5.77081125956799 LTS-023 chr2 179914641 190732692 10818052 * c(MIR1258, MIR1245A, MIR3129, MIR3606, MIR4437, MIR1245B, OSGEPL1-AS1, CALCRL, UBE2E3, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, ZNF385B, PPP1R1C, FAM171B, FRZB, CCDC141, SLC40A1, ITGA4, ITGAV, CERKL, FSIP2, NEUROD1, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, ZC3H15, CWC22, OSGEPL1, SSFA2, MIR561, TFPI, WDR75, SESTD1, ZNF804A, ORMDL1) 0.310241744956231 124 0.128479687733038 1.16049924161694 4587 0.559938073583851 5 3 2 -6.94094299532964 LTS-023 chr2 190732693 190738243 5551 * PMS1 NA 0 NA 0.962 1 NA NA NA NA NA LTS-023 chr2 190738244 192250658 1512415 * c(NEMP2, HIBCH, MSTN, GLS, INPP1, MYO1B, NAB1, PMS1, MFSD6, STAT1, STAT4, C2orf88) 0.344378615440725 31 0.104960217758101 1.08537371615137 1273 0.747254881742504 5 3 2 -6.82300797455644 LTS-023 chr2 192250659 192543396 292738 * c(MYO1B, NABP1) 0.0571400431755715 3 0.00709459888459759 0.747362371589344 115 0.174835621611521 2 2 0 -7.44196438912362 LTS-023 chr2 192543397 193060485 517089 * c(TMEFF2, NABP1, SDPR) 0.335594295101988 9 0.130553096903563 1.19118945594847 340 0.845792087913921 6 4 2 -6.74826623842558 LTS-023 chr2 196544710 197208469 663760 * c(DNAH7, SLC39A10, HECW2, STK17B) 0.342221180045764 24 0.201339315404459 0.748214647154072 806 0.36801332173383 3 2 1 -6.733086366142 LTS-023 chr2 197208470 198415980 1207511 * c(LOC100130452, HSPE1-MOB4, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, HECW2, PGAP1, COQ10B, ANKRD44, GTF3C3) 0.313268782821378 29 0.091670632844485 1.03717982716274 1175 0.289054938540503 4 3 1 -6.9251246984163 LTS-023 chr2 198415981 198417419 1439 * c(HSPE1-MOB4, MOB4) 0 1 NA 1.18317515319079 27 0.682362977907091 5 5 0 -5.76441087299687 LTS-023 chr2 198417420 202137354 3719935 * c(LOC100507140, HSPE1-MOB4, CLK1, TYW5, RFTN2, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, MOB4, SPATS2L, FAM126B, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, PLCL1, PPIL3, NIF3L1, CFLAR-AS1, BOLL, C2orf47, CASP8, CASP10, CFLAR, MARS2, BZW1) 0.235111910607334 56 0.161212273347664 1.09566903218314 2122 0.390228100330689 5 4 1 -6.87637618844555 LTS-023 chr2 202137355 202149696 12342 * CASP8 0.308 1 NA 1.07861111322115 31 0.355944927478746 4 4 0 -5.76498226298655 LTS-023 chr2 202149697 202677292 527596 * c(ALS2CR12, ALS2CR11, STRADB, ALS2, MPP4, CDK15, TMEM237, TRAK2, CASP8) 0.312507877661224 38 0.121772518371104 1.06833144401741 1100 0.358804309108865 4 3 1 -6.84220439724569 LTS-023 chr2 202677293 202741311 64019 * CDK15 0 1 NA 1.21771050784809 39 0.300481071773127 5 5 0 -5.76444315000627 LTS-023 chr2 202741312 203241949 500638 * c(SNORD11B, KIAA2012, NOP58, CDK15, BMPR2, SNORD11, SNORD70, SUMO1, FZD7) 0.146291859541601 5 0.184165143281784 1.08911354792647 402 0.374587826129763 5 4 1 -6.83861261293613 LTS-023 chr2 203241950 203242027 78 * BMPR2 NA 0 NA 1.321 1 NA NA NA NA NA LTS-023 chr2 203242028 206860400 3618373 * c(ABI2, PARD3B, ICA1L, CTLA4, FAM117B, ICOS, INO80D, WDR12, CYP20A1, RAPH1, NBEAL1, BMPR2, CARF, NRP2, CD28) 0.218500191702204 41 0.170551633695188 1.15722700764902 2233 0.342207815778156 5 4 1 -6.76597915477556 LTS-023 chr2 206860401 206862015 1615 * INO80D 0.439 1 NA 1.10445167325885 35 0.204609782330196 5 5 0 -5.76459258795067 LTS-023 chr2 206862016 209221935 2359920 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4775, CPO, MDH1B, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, FASTKD2, SNORD51, GPR1, IDH1, PLEKHM3, C2orf80, DYTN, NDUFS1, INO80D, ZDBF2, SNORA41, FZD5, KLF7, ADAM23) 0.316212670076571 81 0.127944519226108 1.13678818629702 2556 0.465013991983763 5 3 2 -6.9059571203058 LTS-023 chr2 209221936 209223147 1212 * PIKFYVE 0 1 NA 1.19677188868675 27 0.233627128834892 5 5 0 -5.76441110442824 LTS-023 chr2 209223148 211158570 1935423 * c(KANSL1L, PIKFYVE, UNC80, ACADL, MAP2, MYL1, PTH2R, RPE) 0.274681445299193 34 0.141814910378648 1.17795237615525 1095 0.468902316956398 5 4 1 -6.83961855516477 LTS-023 chr2 211158571 211158914 344 * MYL1 NA 0 NA 1.221 1 NA NA NA NA NA LTS-023 chr2 211158915 213791045 2632131 * c(MIR548F2, MIR4776-1, MIR4776-2, LANCL1, CPS1, ERBB4, CPS1-IT1, MYL1) 0.212876556849429 13 0.191985943662818 1.25018701833799 704 0.456450224777189 5 4 1 -6.74246427889609 LTS-023 chr2 213791046 213870062 79017 * c(MIR4776-1, MIR4776-2, IKZF2) NA 0 NA 1.768 1 NA NA NA NA NA LTS-023 chr2 213870063 213870095 33 * IKZF2 0 1 NA 3.69 1 NA NA NA NA NA LTS-023 chr2 213870096 213870894 799 * IKZF2 0.455 1 NA 1.55383291512294 17 0.175952721758197 7 7 0 -5.76448669431028 LTS-023 chr2 213870895 214261444 390550 * c(LOC100130451, IKZF2, SPAG16) 0.354574064491915 12 0.170346949879748 1.56508528736136 229 0.530665083295457 6 4 2 -6.74677767222605 LTS-023 chr2 214261445 214286927 25483 * SPAG16 NA 0 NA 0.811 1 NA NA NA NA NA LTS-023 chr2 214286928 214354714 67787 * SPAG16 0.242 1 NA 0.777467847698293 9 0.31048420965396 3 3 0 -5.76508600028334 LTS-023 chr2 214354715 215442114 1087400 * c(VWC2L-IT1, VWC2L, SPAG16) 0.043 1 NA 0.911088992045305 99 0.30036748982286 4 4 0 -5.7994800433286 LTS-023 chr2 215442115 228124552 12682438 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, MIR4439, MIR5702, ARPC2, SPEG, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, PKI55, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EPHA4, ACSL3, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, RESP18, MIR153-1, NA NA NA NA NA NA NA NA NA LTS-023 MIR26B, ATIC, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, ANKZF1, ASIC4, DOCK10, MREG, PECR, MARCH4, WDFY1, NYAP2, USP37, PTPRN, BARD1, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, LOC646736, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, FAM124B, TUBA4B, WNT10A, RHBDD1, CUL3, PLCD4, STK16, CDK5R2, CNOT9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TMEM169, TTLL4) 0.0390447228850401 263 0.0260995523153675 0.783323924949129 9727 0.316574345501259 3 3 0 -6.89983861437434 LTS-023 NA NA NA NA LTS-023 chr2 228124553 228124639 87 * c(COL4A3, LOC654841) 0 1 NA 4.886 1 NA NA NA NA NA LTS-023 chr2 228124640 228135631 10992 * c(COL4A3, LOC654841) 0.312 1 NA 1.13800679635091 37 0.326478903567251 5 5 0 -5.76462465448044 LTS-023 chr2 228135632 230900802 2765171 * c(MIR5703, COL4A3, FBXO36, SLC16A14, DAW1, AGFG1, PID1, C2orf83, MFF, CCL20, LOC654841, TM4SF20, SPHKAP, SLC19A3, DNER, TRIP12) 0.245686422978718 25 0.155234467822066 1.15519567752426 1415 0.535153922524239 5 4 1 -6.76709596434187 LTS-023 chr2 230900803 231036897 136095 * c(FBXO36, SLC16A14, SP110) 0 1 NA 1.13208805258898 93 0.59757055915183 5 5 0 -5.76534953242943 LTS-023 chr2 231036898 231149057 112160 * c(SP140, SP110) 0.173744140840119 10 0.180737501488884 1.18407695383269 182 0.594686276919016 6 5 1 -6.74114459084961 LTS-023 chr2 231149058 231158931 9874 * SP140 0.372 1 NA 0.978159828719842 23 0.219736538256748 4 4 0 -5.76441030834885 LTS-023 chr2 231158932 232952286 1793355 * c(MIR1471, MIR4777, NMUR1, SP140, DIS3L2, SPATA3, LOC151475, LINC00471, LOC151484, C2orf57, C2orf72, SNORD82, HTR2B, SPATA3-AS1, NCL, NPPC, PDE6D, CAB39, PSMD1, PTMA, SNORD20, COPS7B, SNORA75, SP100, ARMC9, ITM2C, GPR55, B3GNT7, SP140L) 0.310364327599788 58 0.125418955497421 1.10612088206445 1621 0.381747943643534 4 3 1 -6.92185585045099 LTS-023 chr2 232952287 233208988 256702 * DIS3L2 0.357 1 NA 1.21783218363548 135 0.374480445981273 5 5 0 -5.76449731317774 LTS-023 chr2 233208989 233346206 137218 * c(ALPI, ALPP, ALPPL2, ECEL1P2, ECEL1) 0.106169207155912 9 0.178936518848942 1.18657989521444 263 0.797321526856408 8 7 1 -6.77966886611959 LTS-023 chr2 233346207 233347919 1713 * ECEL1 0.366 1 NA 1.09667665293749 19 0.294266031128337 5 5 0 -5.76451918080415 LTS-023 chr2 233347920 234681645 1333726 * c(LOC100286922, CHRND, CHRNG, TIGD1, NGEF, GIGYF2, INPP5D, KCNJ13, C2orf82, DNAJB3, NEU2, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, SAG, PRSS56, SCARNA6, SCARNA5, EFHD1, DGKD, ECEL1, EIF4E2) 0.314587379643602 68 0.116869482141464 1.11518686350906 2071 0.400616906884185 4 3 1 -6.92475940279187 LTS-023 chr2 234681646 234688058 6413 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0 1 NA 1.12437993409231 15 1.46352030913073 5 5 0 -5.76441917160857 LTS-023 chr2 234688059 234916711 228653 * c(MSL3P1, HJURP, TRPM8) 0.155364211643962 20 0.176382538818331 1.16077355425502 460 0.899471546768465 6 5 1 -6.75347732209016 LTS-023 chr2 234916712 234923170 6459 * TRPM8 0.326 1 NA 1.05853272556796 7 0.298362116195995 4 4 0 -5.76468978253322 LTS-023 chr2 234923171 238463408 3540238 * c(ARL4C, COPS8, AGAP1, COL6A3, SH3BP4, GBX2, ASB18, ACKR3, SPP2, TRPM8, MLPH, IQCA1) 0.34377338336365 58 0.0941633069335172 1.15487585357213 1379 0.388118926050414 5 3 2 -6.85216088501098 LTS-023 chr2 238463409 238475915 12507 * c(PRLH, MLPH) NA 0 NA 1.15822047378039 20 0.350273592315613 5 NA NA -5.76451433993688 LTS-023 chr2 238475916 238483751 7836 * RAB17 0.054 1 NA 0.722608088668544 21 0.178398523910186 3 3 0 -5.76457243849566 LTS-023 chr2 238483752 239360922 877171 * c(UBE2F-SCLY, RAMP1, UBE2F, LOC151174, TRAF3IP1, ESPNL, RBM44, KLHL30, SCLY, ASB1, HES6, RAB17, LOC643387, ILKAP, PER2, LRRFIP1) 0.0410531187405944 68 0.0321605252666341 0.765013918693948 1526 0.311035572319873 3 3 0 -6.7384723172757 LTS-023 chr2 239360923 239756637 395715 * LINC01107 NA 0 NA 0.306 1 NA NA NA NA NA LTS-023 chr2 239756638 240723861 967224 * c(MIR4269, MIR2467, MIR4440, MIR4441, TWIST2, LOC150935, FLJ43879, MGC16025, HDAC4) 0.0649341676050837 17 0.0411953738122306 0.448748866896505 449 0.186421456420061 2 2 0 -7.07774219120066 LTS-023 chr2 240723862 240898024 174163 * c(MIR4786, NDUFA10) 0.1 1 NA 0.410457442281386 51 0.100375311393066 2 2 0 -6.27084701423455 LTS-023 chr2 240898025 240984833 86809 * c(OR6B3, OR6B2, NDUFA10, PRR21) 0.183760764019501 9 0.163113457446037 0.428439981733923 189 0.141910386536882 2 2 0 -7.1699501152504 LTS-023 chr2 240984834 241389297 404464 * c(PP14571, OTOS, COPS9, OR6B3, GPC1) 0.1 1 NA 0.394712902044227 91 0.141246936928548 2 2 0 -6.54001184678575 LTS-023 chr2 241389298 242836535 1447238 * c(PP14571, BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, MIR149, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.0660888535512712 122 0.0647006153348799 0.447438236388741 3376 0.300439938216027 2 2 0 -6.94160939401159 LTS-023 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.437475464426747 27 0.0556637749389658 2 NA NA -6.6885645816867 LTS-023 chr3 239351 391100 151750 * CHL1 0.029 1 NA 1.21855633558881 37 0.350748455419235 5 5 0 -5.76447698106163 LTS-023 chr3 391101 1445895 1054795 * c(CHL1, CNTN6) 0.0292795582698118 16 0.017156145643277 1.29198032094068 320 0.519323493649223 5 5 0 -6.79005117338605 LTS-023 chr3 1445896 8793851 7347956 * c(EGOT, LMCD1-AS1, BHLHE40-AS1, MIR4790, CNTN4-AS2, CNTN4, SUMF1, GRM7, LINC00312, LMCD1, IL5RA, ITPR1, OXTR, SSUH2, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, CAV3, EDEM1) 0.0423720008227775 78 0.0350384119173559 0.827891320361067 1854 0.335902984278674 3 3 0 -7.12578394797954 LTS-023 chr3 8793852 8793960 109 * OXTR NA 0 NA 1.444 1 NA NA NA NA NA LTS-023 chr3 8793961 8810118 16158 * OXTR 0.0374968021939006 3 0.0211266025033211 1.75411750009027 50 0.449832359250167 3 3 0 -6.77095762856469 LTS-023 chr3 8810119 8817115 6997 * OXTR NA 0 NA 0.863 1 NA NA NA NA NA LTS-023 chr3 8817116 10028460 1211345 * c(SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, PRRT3, LHFPL4, THUMPD3-AS1, OGG1, SETD5, EMC3, RAD18, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, SRGAP3) 0.0336404033225013 61 0.025418497201841 0.815416804621912 2185 0.352084190475098 3 3 0 -6.80475900196289 LTS-023 chr3 10028461 10028514 54 * c(EMC3, CIDEC) 0.029 1 NA 1.129 1 NA NA NA NA NA LTS-023 chr3 10028515 10103812 75298 * c(CIDECP, FANCD2, LOC401052, EMC3, CIDEC) 0.365145900354261 9 0.15570681138316 0.705555512711032 153 0.352537383321467 3 2 1 -6.74931252652019 LTS-023 chr3 10103813 10106532 2720 * FANCD2 0.013 1 NA 0.756493183438452 16 0.283138003748467 3 3 0 -5.76441340544294 LTS-023 chr3 10106533 11304184 1197652 * c(MIR885, GHRLOS, SLC6A1-AS1, FANCD2OS, FANCD2, LINC00606, HRH1, IRAK2, ATP2B2, GHRL, BRK1, SEC13, SLC6A1, SLC6A11, VHL, LINC00852, TATDN2) 0.0196123919123291 42 0.0204637295633586 0.82862795873574 1156 0.427170046333832 4 4 0 -6.99047312967654 LTS-023 chr3 11304185 11350553 46369 * c(ATG7, HRH1) 0.045 1 NA 0.781609850693149 41 0.243327271335561 3 3 0 -5.76537592116664 LTS-023 chr3 11350554 11924678 574125 * c(ATG7, TAMM41, VGLL4) 0.128778248165959 9 0.126532604493862 0.836738055521327 332 0.240221012830431 3 3 0 -7.09648968177484 LTS-023 chr3 11924679 12187113 262435 * SYN2 0 1 NA 0.958403327467643 23 0.487754157929048 4 4 0 -5.76465448361163 LTS-023 chr3 12187114 20215932 8028819 * c(MKRN2OS, FGD5P1, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, MIR4791, SGO1-AS1, GALNT15, KCNH8, CHCHD4, METTL6, SGO1, PP2D1, EFHB, FGD5, DAZL, FBLN2, CAND2, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, HACL1, LSM3, LINC00620, DPH3, LOC339862, COL6A4P1, TPRXL, CCDC174, PPARG, TMEM40, RAB5A, RAF1, RPL32, SATB1, RBSN, MRPS25, SLC6A6, SYN2, BTD, MIR563, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, NA NA NA NA NA NA NA NA NA LTS-023 GRIP2, COLQ, C3orf20, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5, IQSEC1) 0.0368707738220572 155 0.0248336990794902 0.813294267330976 5398 0.311129099440615 3 3 0 -7.07778665234048 LTS-023 NA NA NA NA LTS-023 chr3 20215933 37090138 16874206 * c(PDCD6IP, MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, LRRC3B, CCR4, TRIM71, SGO1, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, NKIRAS1, LINC00692, GADL1, ZNF860, VENTXP7, MIR128-2, MLH1, DYNC1LI1, CMTM6, OXSM, NGLY1, RARB, RPL15, AZI2, TMPPE, THRB-AS1, LINC00693, STAC, TGFBR2, THRB, TOP2B, UBE2E1, UBE2E2, UBP1, NA NA NA NA NA NA NA NA NA LTS-023 ZNF385D, EOMES, DCLK3, SLC4A7, EPM2AIP1, TRANK1, NR1D2) 0.0308084672264739 129 0.0235964923774569 0.921479173027767 5137 0.382907065742996 4 4 0 -6.96112879495515 LTS-023 NA NA NA NA LTS-023 chr3 37090139 37090381 243 * MLH1 NA 0 NA 1.607 1 NA NA NA NA NA LTS-023 chr3 37090382 37100419 10038 * c(MLH1, LRRFIP2) 0.049 1 NA 1.46656648546163 66 0.452080244594306 6 6 0 -5.76442230358078 LTS-023 chr3 37100420 37105158 4739 * c(MLH1, LRRFIP2) NA 0 NA 0.85 1 NA NA NA NA NA LTS-023 chr3 37105159 46416169 9311011 * c(ACVR2B-AS1, KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, CTDSPL, EIF1B, CXCR6, CCR9, SCN11A, ZNF501, CCR1, CCR3, CCR5, CCR8, ACKR2, LYZL4, KLHL40, TMEM42, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, SACM1L, EXOSC7, LARS2, ZNF620, TMEM158, MYRIP, HIGD1A, GOLGA4, XCR1, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, ACAA1, C3orf35, ZNF445, ITGA9, TOPAZ1, ZNF662, RPSA, MIR138-1, MIR26A1, MLH1, NA NA NA NA NA NA NA NA NA LTS-023 MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, SS18L2, ZDHHC3, PLCD1, LZTFL1, SLC6A20, SNRK, SLC25A38, ULK4, ANO10, ZKSCAN7, KIF15, SNORA6, KIAA1143, HHATL, WDR48, SNORA62, SCN5A, SCN10A, LIMD1-AS1, CSRNP1, GORASP1, CDCP1, MIR564, TGM4, CLEC3B, FAM198A, CCR2, VIPR1, ZNF35, FYCO1, POMGNT2, CCK, LIMD1, RPL14, SEC22C, ZNF502, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, DLEC1, EXOG, XYLB, OXSR1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 ) 0.0319907817574688 256 0.0255245025373544 0.90128642112928 9539 0.453577265660181 4 4 0 -6.90812337554623 LTS-023 NA NA NA NA LTS-023 chr3 46416170 46416236 67 * CCR5 0.5 1 NA 0.681959637956106 5 0.445609919099654 3 3 0 -5.76441178775393 LTS-023 chr3 46416237 46450884 34648 * c(CCR5, CCRL2) 0.0556919743607199 9 0.147994087719746 0.8554864465484 79 0.472164086970137 3 3 0 -6.74232871701881 LTS-023 chr3 46450885 46480801 29917 * c(LTF, CCRL2) 0.034 1 NA 0.849478648563057 23 0.359048203794729 3 3 0 -5.76671217281755 LTS-023 chr3 46480802 58899403 12418602 * c(SNORD19B, LINC00696, NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, LSMEM2, NA NA NA NA NA NA NA NA NA LTS-023 ASB14, CCDC12, DAG1, DNASE1L3, DOCK3, DUSP7, CELSR3, C3orf67, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, FLNB, NBEAL2, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, ALS2CL, TMIE, PTPN23, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, SPATA12, IMPDH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, PRSS45, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, LTF, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYL3, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, PTH1R, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TDGF1, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, LRRC2, CCDC51, WDR82, CAMP, ACOX2, BAP1, RTP3, LRRC2-AS1, HYAL3, ATRIP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.0285048714472524 470 0.0268365201062667 0.909385504288229 19895 0.382626113519555 4 4 0 -6.98599800391741 LTS-023 NA NA NA NA LTS-023 chr3 58899404 58899422 19 * C3orf67 NA 0 NA 1.017 1 NA NA NA NA NA LTS-023 chr3 58899423 69098142 10198720 * c(LINC00994, MIR3136, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, FAM19A4, PRICKLE2, C3orf67, FHIT, LRIG1, EOGT, LINC00698, FAM19A1, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, TMF1, THOC7, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.033884836052052 66 0.0233806097814602 0.951697531084431 2759 0.447504327752678 4 4 0 -6.77000020478124 LTS-023 chr3 69098143 69915551 817409 * c(MIR3136, ARL6IP5, FRMD4B, MITF, LMOD3, TMF1, UBA3) 0.0460581049670511 20 0.0146843095638992 0.802573148780023 459 0.266365233903351 3 3 0 -6.90235242057494 LTS-023 chr3 69915552 69928214 12663 * MITF NA 0 NA 1.029 1 NA NA NA NA NA LTS-023 chr3 69928215 74473971 4545757 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.0332341513322806 36 0.019539703170724 0.938706705611198 1293 0.32261761562471 4 4 0 -6.79041404521282 LTS-023 chr3 74473972 75680045 1206074 * c(MIR1324, CNTN3, FAM86DP) 0.11531548228786 6 0.0550635995917448 1.4671405369831 30 0.434777845241272 8 7 1 -7.07106781458144 LTS-023 chr3 75680046 75714298 34253 * character(0) 0.252 1 NA 1.2128307615874 10 0.297182491633227 5 5 0 -5.76441548282157 LTS-023 chr3 75714299 75779281 64983 * ZNF717 0.318069225359673 27 0.123523380948813 1.71551172796597 80 0.94090450817958 9 6 3 -6.74433952498415 LTS-023 chr3 75779282 75779287 6 * ZNF717 0.013 1 NA 3.084 1 NA NA NA NA NA LTS-023 chr3 75779288 75779303 16 * ZNF717 NA 0 NA 0.833 1 NA NA NA NA NA LTS-023 chr3 75779304 75779688 385 * ZNF717 0.175371205317194 9 0.145775512346896 0.958853482134463 28 1.01202852697836 12 10 2 -6.73330699077516 LTS-023 chr3 75779689 75779709 21 * ZNF717 0.305 1 NA 1.124 1 NA NA NA NA NA LTS-023 chr3 75779710 75785631 5922 * ZNF717 0.34539781708186 35 0.0478386293050032 1.1599496138549 68 0.656595275823348 3 2 1 -6.74113349408769 LTS-023 chr3 75785632 75785664 33 * ZNF717 0.285 1 NA 0.929 1 NA NA NA NA NA LTS-023 chr3 75785665 75786020 356 * ZNF717 0.227977438265662 15 0.101590072630857 0.973446592659472 28 0.850890837258938 9 7 2 -6.73364138099515 LTS-023 chr3 75786021 75786059 39 * ZNF717 0.152 1 NA 0.981191850094649 5 0.29372827579244 4 4 0 -5.76441013950327 LTS-023 chr3 75786060 75786302 243 * ZNF717 0.123002500748661 9 0.169428778875111 1.16724160662775 19 0.707510411553173 9 8 1 -6.73313651433556 LTS-023 chr3 75786303 75786450 148 * ZNF717 0.343 1 NA 0.839625382701282 10 0.334860850039071 3 3 0 -5.76442089103011 LTS-023 chr3 75786451 75787032 582 * ZNF717 0.254233471403881 22 0.111062713846396 0.827818842683123 39 0.557162168054751 8 6 2 -6.73456272752047 LTS-023 chr3 75787033 75787116 84 * ZNF717 0.434 1 NA 0.824945403686033 3 0.187641502161258 3 3 0 -5.76442408169515 LTS-023 chr3 75787117 75787520 404 * ZNF717 0.376460531489306 11 0.0764819646000997 1.0224845606441 18 0.499489451758794 10 6 4 -6.73478167515858 LTS-023 chr3 75787521 75787546 26 * ZNF717 0.016 1 NA 1.63248917167026 3 0.907687721631179 7 7 0 -5.76441014266365 LTS-023 chr3 75787547 75788281 735 * ZNF717 0.240437817172854 20 0.0529940165440749 1.00983429094731 49 0.572778389373528 17 13 4 -6.73557351017153 LTS-023 chr3 75788282 75788292 11 * ZNF717 0.311 1 NA 0.896760878704765 2 0.265165042944955 4 4 0 -5.76441076129295 LTS-023 chr3 75788293 75986813 198521 * c(ZNF717, ROBO2) 0.366055591483715 17 0.0564028315934999 0.99533468361874 52 0.692239623580957 5 3 2 -6.78341163156455 LTS-023 chr3 75986814 77089395 1102582 * ROBO2 0.106 1 NA 0.945894699827328 11 0.202336757996079 4 4 0 -5.78127535749289 LTS-023 chr3 77089396 86117120 9027725 * c(MIR5688, CADM2-AS2, CADM2, GBE1, LINC00971, ROBO1, ROBO2) 0.0125599696855134 10 0.0259248915137557 0.986530707709797 619 0.288499317555806 4 4 0 -7.00082019445183 LTS-023 chr3 86117121 86117809 689 * CADM2 NA 0 NA 1.07287542029048 16 0.118869115697336 4 NA NA -5.7646661515223 LTS-023 chr3 86117810 86988216 870407 * c(CADM2, VGLL3) 0.26 1 NA 1.3039415061562 27 0.160575097145734 5 5 0 -5.88284307314686 LTS-023 chr3 86988217 90264768 3276552 * c(MIR4795, EPHA3, CHMP2B, C3orf38, HTR1F, VGLL3, POU1F1, ZNF654, CGGBP1) 0.297456745156293 35 0.0502876933338599 1.25114809546995 979 0.589226988392854 6 4 2 -7.16121248139371 LTS-023 chr3 90264769 90283666 18898 * character(0) NA 0 NA 1.55505183477712 7 0.328111697009244 7 NA NA -5.76491990246723 LTS-023 chr3 93591838 93778710 186873 * c(ARL13B, DHFR2, STX19, PROS1) 0 1 NA 0.775442374707098 249 0.238601646797304 3 3 0 -5.76716632669747 LTS-023 chr3 93778711 97983257 4204547 * c(MTHFD2P1, CRYBG3, DHFR2, GABRR3, LINC00879, OR5H1, EPHA6, OR5H14, OR5H15, NSUN3, OR5H6, OR5AC2, ARL6, MINA) 0.449158347832388 20 0.0421132245762602 0.751413497640657 812 0.306872595067136 4 2 2 -8.9822654786319 LTS-023 chr3 97983258 98002376 19119 * c(OR5H6, OR5H2) 0 1 NA 0.788676264440114 25 0.38553976016316 3 3 0 -5.76463800176625 LTS-023 chr3 98002377 98110012 107636 * c(OR5K3, OR5K4, OR5H2) 0.467 1 NA 0.668580010686913 45 0.247243678106512 3 3 0 -5.77736590107419 LTS-023 chr3 98110013 113680090 15570078 * c(ZBTB11-AS1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, MIR4446, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, USF3, ALCAM, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, OR5K1, ZBTB11, MORC1, GPR15, LINC00636, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, NA NA NA NA NA NA NA NA NA LTS-023 LINC01205, OR5K2, OR5K3, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, ZBED2, CEP97, C3orf52, NAA50, CMSS1, RETNLB, CCDC54, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.250486330020351 210 0.102128320054332 1.00264556445669 7970 0.357948394006786 4 3 1 -6.79385324590096 LTS-023 NA NA NA NA LTS-023 chr3 113680091 113683761 3671 * c(ZDHHC23, CCDC191) 0 1 NA 1.17501444076773 57 0.499110851018098 5 5 0 -5.76441652263849 LTS-023 chr3 113683762 115738526 2054765 * c(ZBTB20-AS1, MIR4796, DRD3, TIGIT, GAP43, ZBTB20, LSAMP, CCDC191, MIR568, ZNF80, QTRT2) 0.106621028868698 13 0.143369882042649 0.986363306944449 568 0.423839954316723 4 4 0 -6.90005196761572 LTS-023 chr3 115738527 115805135 66609 * LSAMP NA 0 NA 1.348 1 NA NA NA NA NA LTS-023 chr3 115805136 116728252 923117 * c(TUSC7, LSAMP) NA 0 NA 1.54360216635939 59 0.202223532510711 6 NA NA -5.83289471981948 LTS-023 chr3 117715910 118269801 553892 * character(0) 0 1 NA 1.02348563122935 20 1.06107227790918 4 4 0 -5.76504793782428 LTS-023 chr3 118269802 118621664 351863 * IGSF11 0.277 1 NA 1.0490385435513 56 0.30669860834969 4 4 0 -5.77574931469815 LTS-023 chr3 118621665 119531673 910009 * c(IGSF11-AS1, COX17, ADPRH, IGSF11, C3orf30, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, UPK1B, B4GALT4, NR1I2, MAATS1, CD80) 0.232911744875619 44 0.112237073538705 0.937843122280744 1204 0.392252700350099 4 3 1 -6.7878983275648 LTS-023 chr3 119531674 119531700 27 * NR1I2 0 1 NA 4.454 1 NA NA NA NA NA LTS-023 chr3 119531701 129202316 9670616 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, ISY1-RAB43, MIR5002, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, POLQ, ALDH1L1, PDIA5, ADCY5, FSTL1, MGLL, TXNRD3, OSBPL11, LRRC58, CCDC58, TPRA1, UROC1, RPL32P3, CSTA, DTX3L, ROPN1B, C3orf22, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, ALG1L, HACD2, COPG1, LINC01565, NUP210P1, GATA2, FAM162A, SEC22A, GOLGB1, GP9, DNAJB8-AS1, RABL3, ILDR1, ACAD9, KLF15, GSK3B, GTF2E1, SEC61A1, NA NA NA NA NA NA NA NA NA LTS-023 HCLS1, HGD, RAB43, H1FX-AS1, CFAP100, ITGB5, KPNA1, MIR198, MCM2, MYLK, NDUFB4, ARGFX, PODXL2, FBXO40, PLXNA1, SEMA5B, WDR5B, PARP14, ROPN1, SLC41A3, IFT122, EAF2, MUC13, HMCES, ISY1, HEG1, KIAA1257, EEFSEC, RPN1, TXNRD3NB, CCDC14, LOC653712, SLC15A2, SNORA7B, UMPS, CNBP, ZNF148, RAB7A, ZXDC, HSPBAP1, EFCC1, ABTB1, PARP9, CHCHD6, SLC12A8, CASR, DIRC2, RUVBL1, SNX4, NR1I2, MBD4, H1FX, KALRN, LOC90246, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 EFCAB12, CD86, STXBP5L, IQCB1) 0.220316824223113 313 0.116992091369214 1.01886078372346 9896 0.443516547484843 4 3 1 -6.8711542712169 LTS-023 NA NA NA NA LTS-023 chr3 129202317 129247551 45235 * c(IFT122, RHO) 0.305 1 NA 0.978820990354877 93 0.252851374668617 4 4 0 -5.76441161207679 LTS-023 chr3 129247552 131624176 2376625 * c(TMCC1-AS1, MRPL3, CPNE4, NUDT16, COL6A6, H1FOO, NUDT16P1, TMCC1, PLXND1, COL6A5, ATP2C1, ASTE1, PIK3R4, LOC339874, RHO, ALG1L2, COL6A4P2, SNORA58, TRH, FAM86HP, NEK11) 0.280306840578847 53 0.0745192964557976 1.02658236844221 1882 0.304788195051138 4 3 1 -6.79531058416803 LTS-023 chr3 131624177 131624195 19 * CPNE4 NA 0 NA 1.166 1 NA NA NA NA NA LTS-023 chr3 131624196 133652718 2028523 * c(NPHP3-ACAD11, MIR5704, TOPBP1, CPNE4, DNAJC13, NPHP3, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, SLCO2A1, TMEM108, TF, UBA5, C3orf36, ACAD11, BFSP2) 0.296596836080887 46 0.213210412956865 1.39805713141653 1631 0.570511659323352 6 4 2 -6.7555372973117 LTS-023 chr3 133652719 133666152 13434 * SLCO2A1 0.395 1 NA 1.53008223744799 41 0.315403396365709 6 6 0 -5.76472882797663 LTS-023 chr3 133666153 136053479 2387327 * c(MIR4788, EPHB1, ANAPC13, KY, PCCB, AMOTL2, MSL2, PPP2R3A, RYK, SLCO2A1, CEP63) 0.427248673293688 31 0.0879522353264812 1.38787866034025 1015 0.431959979617576 6 3 3 -6.81378043747698 LTS-023 chr3 136053480 136053654 175 * PCCB 0 1 NA 2.2337181521406 4 0.0926930418100518 9 9 0 -5.76443916309247 LTS-023 chr3 136053655 137752187 1698533 * c(STAG1, NCK1, PCCB, CLDN18, IL20RB, SLC35G2, SOX14) 0.28303372112853 17 0.226343895043647 1.40991282730574 516 0.499829710837531 6 4 2 -6.76630273745977 LTS-023 chr3 137752188 137752425 238 * CLDN18 0.442 1 NA 1.48707464258007 5 0.234417362838165 6 6 0 -5.76441316293321 LTS-023 chr3 137752426 137942482 190057 * c(DZIP1L, ARMC8, A4GNT, DBR1, CLDN18) 0.441003686295863 13 0.131063255426824 1.43158676854191 273 0.354851446144821 6 3 3 -6.80078529594125 LTS-023 chr3 137942483 138015442 72960 * c(ARMC8, NME9) 0 1 NA 1.43685200292981 179 0.37978201396418 6 6 0 -5.76441014124746 LTS-023 chr3 138015443 138048658 33216 * c(ARMC8, NME9) 0 1 NA 1.34742656105262 118 0.305914777596103 6 6 0 -5.76529335021889 LTS-023 chr3 138048659 138091648 42990 * c(MRAS, NME9) NA 0 NA 0.367 1 NA NA NA NA NA LTS-023 chr3 138091649 138382758 291110 * c(MRAS, PIK3CB, FAIM, CEP70, ESYT3) 0.102532338005066 9 0.175833728277598 1.07728649831882 457 0.464528791041251 4 4 0 -6.84098204656071 LTS-023 chr3 138382759 138433568 50810 * PIK3CB 0.333 1 NA 0.983660071873623 65 0.211820086484879 4 4 0 -5.76444152610947 LTS-023 chr3 138433569 139195426 761858 * c(PISRT1, PRR23B, PRR23C, FOXL2NB, PIK3CB, MRPS22, RBP2, BPESC1, FOXL2, PRR23A, COPB2) 0.324568342704987 17 0.0964339533200894 1.05876962967896 504 0.343111264119644 4 3 1 -6.97794479942951 LTS-023 chr3 139195427 139236252 40826 * character(0) NA 0 NA 1.857 1 NA NA NA NA NA LTS-023 chr3 139236253 141011208 1774956 * c(TRIM42, NMNAT3, SLC25A36, RBP1, CLSTN2, SPSB4, PXYLP1) 0.301897842820445 22 0.213588049708674 1.49503215253236 656 0.845159996993229 6 4 2 -6.74997370552278 LTS-023 chr3 141011209 142511803 1500595 * c(GRK7, ZBTB38, GK5, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, TRPC1, PXYLP1, RNF7) 0.364255473712544 43 0.175201007799607 1.34489914379325 1646 0.381121738076621 6 4 2 -6.77651560006526 LTS-023 chr3 142511804 142513047 1244 * TRPC1 NA 0 NA 1.165 1 NA NA NA NA NA LTS-023 chr3 142513048 148562470 6049423 * c(LOC100289361, LOC100507389, SLC9A9-AS1, CPB1, AGTR1, C3orf58, U2SURP, PCOLCE2, SLC9A9, PAQR9, PLSCR5, PLOD2, PLSCR1, PLSCR2, PLSCR4, TRPC1, ZIC1, ZIC4, CHST2) 0.330392444203501 39 0.096452193552172 1.14253974265004 1439 0.382083963209222 5 3 2 -6.96710864583478 LTS-023 chr3 148562471 148563390 920 * CPB1 NA 0 NA 1.10597856787028 11 0.0634026096394376 5 NA NA -5.76545852282528 LTS-023 chr3 148563391 148575204 11814 * CPB1 NA 0 NA 1.434 1 NA NA NA NA NA LTS-023 chr3 148575205 148917544 342340 * c(HLTF-AS1, CP, CPA3, CPB1, GYG1, HLTF, HPS3) 0 1 NA 1.40880275244424 535 0.421720332868037 6 6 0 -5.76486571271622 LTS-023 chr3 148917545 150690586 1773042 * c(WWTR1-AS1, RNF13, TM4SF18, CLRN1-AS1, ERICH6, CP, WWTR1, SERP1, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, LOC646903, SIAH2, TM4SF4, CLRN1, EIF2A, TSC22D2) 0.223717867107902 43 0.103280960542741 1.4089581151695 1294 0.430338811628463 6 5 1 -6.83582367216623 LTS-023 chr3 150690587 150690625 39 * c(CLRN1-AS1, CLRN1) NA 0 NA 1.703 1 NA NA NA NA NA LTS-023 chr3 150690626 151987277 1296652 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY13, GPR87, SUCNR1, P2RY12, CLRN1, P2RY14) 0.174586103286479 17 0.107703569223724 1.69424118287573 871 0.584988721668146 7 6 1 -6.75095858716669 LTS-023 chr3 151987278 152057890 70613 * c(MBNL1-AS1, MBNL1, TMEM14EP) 0.355 1 NA 1.5235942842351 41 0.478170782839119 6 6 0 -5.76504354707627 LTS-023 chr3 152057891 156864312 4806422 * c(TIPARP-AS1, LINC00881, ARHGEF26-AS1, LOC100507537, KCNAB1-AS2, KCNAB1-AS1, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, LINC00880, GPR149, LEKR1, MBNL1, MME, P2RY1, CCNL1, RAP2B, TMEM14EP, PA2G4P4, SSR3, LINC00886, KCNAB1, GMPS, SLC33A1) 0.380051745167541 55 0.135004035355576 1.74858177696331 1817 0.472054085977222 7 4 3 -6.76656043488082 LTS-023 chr3 156864313 156864328 16 * CCNL1 NA 0 NA 2.225 1 NA NA NA NA NA LTS-023 chr3 156864329 157821323 956995 * c(PQLC2L, CCNL1, PTX3, SHOX2, VEPH1) 0.318308575588545 23 0.134430860022847 2.07968496637155 439 0.631394325885005 9 6 3 -6.74135317335256 LTS-023 chr3 157821324 157821419 96 * SHOX2 0.482 1 NA 0.623 1 NA NA NA NA NA LTS-023 chr3 157821420 159744440 1923021 * c(MIR3919, IQCJ-SCHIP1, SCHIP1, IL12A, MLF1, RSRC1, LXN, RARRES1, SHOX2, MFSD1, IQCJ, GFM1) 0.409636723915046 32 0.100331848576161 1.44124257948655 824 0.426194452759758 6 3 3 -6.74301874631638 LTS-023 chr3 159744441 159995180 250740 * c(C3orf80, IFT80) 0 1 NA 1.49600213784163 69 0.34873396708006 6 6 0 -5.76640801024743 LTS-023 chr3 159995181 160395070 399890 * c(SMC4, TRIM59, KPNA4, MIR15B, MIR16-2, IFT80, SCARNA7, ARL14) 0.0658067426631679 7 0.184446662828503 1.44751599752584 574 0.434542208341676 6 6 0 -6.76873254436936 LTS-023 chr3 160395071 160395129 59 * ARL14 NA 0 NA 1.145 1 NA NA NA NA NA LTS-023 chr3 160395130 160787749 392620 * c(PPM1L, ARL14) 0.103477364127398 2 0.216374675043084 1.20425784371896 98 0.665104809987465 5 5 0 -6.81191986547979 LTS-023 chr3 160787750 160796505 8756 * PPM1L 0.327 1 NA 1.14532429822391 179 0.239933367892388 5 5 0 -5.76466139016956 LTS-023 chr3 160796506 161221361 424856 * c(LOC101243545, OTOL1, SPTSSB, NMD3, B3GALNT1) 0.385033000516599 8 0.071559665414853 1.12636547796473 307 0.466774187355323 5 3 2 -6.74064401533604 LTS-023 chr3 161221362 167813428 6592067 * c(PDCD10, OTOL1, WDR49, SLITRK3, GOLIM4, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, ZBBX) 0.213859557632287 5 0.205558993965236 1.5696870602093 895 0.419902443309683 7 6 1 -6.86002104096249 LTS-023 chr3 167813429 169684619 1871191 * c(LOC100128164, LRRC34, MECOM, LRRIQ4, SAMD7, MYNN, MIR551B, TERC, SEC62, LRRC31, ACTRT3, EGFEM1P) 0.322190876855996 13 0.105208949604694 2.05447530490173 539 0.709926494503181 9 6 3 -6.74256999204009 LTS-023 chr3 169684620 169866253 181634 * c(GPR160, SEC62, PHC3) 0.137402838684148 3 0.128508106099706 2.48554400955851 327 0.50545167753479 9 8 1 -6.75122940721657 LTS-023 chr3 169866254 171455906 1589653 * c(RPL22L1, TNIK, CLDN11, PLD1, PRKCI, EIF5A2, SLC7A14, SKIL, SLC2A2, MIR569, PHC3) 0.285044304796667 18 0.189141654215768 2.0352286861685 1215 0.539799707893462 8 6 2 -6.76121942936911 LTS-023 chr3 171455907 171510113 54207 * PLD1 NA 0 NA 1.478 1 NA NA NA NA NA LTS-023 chr3 171510114 172351111 840998 * c(GHSR, TMEM212, PLD1, NCEH1, FNDC3B, TNFSF10) 0.3950424254974 7 0.168405265159179 1.69438076691981 445 0.412215917411084 7 4 3 -6.7340999006109 LTS-023 chr3 172351112 173413514 1062403 * c(ECT2, NLGN1, NCEH1, SPATA16) 0.363267735028514 5 0.202435915785712 1.42003044544157 277 0.336265681165071 6 4 2 -6.74528480258147 LTS-023 chr3 173413515 173507493 93979 * NLGN1 NA 0 NA 2.374 1 NA NA NA NA NA LTS-023 chr3 173507494 174815103 1307610 * c(NAALADL2-AS3, NLGN1, NAALADL2) 0.427648401993557 4 0.0326292302493741 2.59439545497984 195 0.760089837859818 12 6 6 -7.23814661842986 LTS-023 chr3 174815104 174935783 120680 * c(NAALADL2-AS3, NAALADL2) NA 0 NA 1.668 1 NA NA NA NA NA LTS-023 chr3 174935784 178969147 4033364 * c(LINC00578, MIR4789, LINC01014, KCNMB2, NAALADL2, KCNMB3, PIK3CA, ZMAT3, TBL1XR1) 0.352350179043812 18 0.193382017196955 1.54389401545101 828 0.53385835666603 6 4 2 -6.7810503303698 LTS-023 chr3 178969148 178984679 15532 * KCNMB3 0.362636684290194 4 0.0167630546142402 1.19404164197877 30 0.450856896785788 8 5 3 -6.75907762192556 LTS-023 chr3 178984680 179095229 110550 * c(KCNMB3, ZNF639, MFN1) 0 1 NA 1.13404105319075 119 0.211474233358223 5 5 0 -5.77017518516977 LTS-023 chr3 179095230 180325720 1230491 * c(TTC14, NDUFB5, PEX5L, MFN1, MRPL47, GNB4, ACTL6A, USP13) 0.139419769263617 17 0.160332879824886 1.18934908389684 895 0.427709499339129 5 4 1 -6.86532088718885 LTS-023 chr3 180325721 180328749 3029 * TTC14 0.422 1 NA 1.14857291983081 54 0.40778409431355 5 5 0 -5.76443705970076 LTS-023 chr3 180328750 182637689 2308940 * c(DNAJC19, TTC14, ATP11B, CCDC39, SOX2-OT, FLJ46066, SOX2, FXR1) 0.325454559195391 11 0.163671289202141 1.17643529307603 554 0.283156488494929 5 3 2 -6.81242095086826 LTS-023 chr3 182637690 183059475 421786 * c(MCF2L2, ATP11B, LAMP3, DCUN1D1, MCCC1, B3GNT5) 0.302313697482633 19 0.116500056471638 1.05458966554837 682 0.562782269199819 4 3 1 -6.79830767161243 LTS-023 chr3 183059476 183097094 37619 * MCF2L2 NA 0 NA 1.653 1 NA NA NA NA NA LTS-023 chr3 183097095 183226182 129088 * c(LINC00888, MCF2L2, KLHL6) 0.430765601014801 8 0.0549883104460783 1.46975287267028 151 0.474773963181207 6 3 3 -6.95487686780374 LTS-023 chr3 183226183 183368747 142565 * c(KLHL24, KLHL6) 0.349015717108886 3 0.0635793467513888 1.10293508965055 33 0.246622572328281 6 4 2 -6.85783992736685 LTS-023 chr3 183368748 183368891 144 * KLHL24 0.348 1 NA 1.08853262905818 5 0.267133487230635 5 5 0 -5.76442297281431 LTS-023 chr3 183368892 183534764 165873 * c(KLHL24, YEATS2, MAP6D1) 0.133505204338379 9 0.164255982471805 1.10962539829376 309 0.400197136360417 6 5 1 -6.82421107133416 LTS-023 chr3 183534765 183535896 1132 * MAP6D1 NA 0 NA 1.08264683499089 14 0.0873091010197626 4 NA NA -5.76534857371177 LTS-023 chr3 183535897 183543032 7136 * MAP6D1 0.488 1 NA 1.31063216143282 5 0.438204290257409 5 5 0 -5.7645613069732 LTS-023 chr3 183543033 184299918 756886 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EIF4G1, HTR3D, EPHB3, HTR3E, POLR2H, ABCF3, PARL, PSMD2, SNORD66, THPO, MAP6D1, CHRD, EIF2B5, VWA5B2, CAMK2N2, ECE2) 0.366871795973007 74 0.178974726694193 1.46966389600137 2270 0.550066725706414 6 3 3 -6.75042115909309 LTS-023 chr3 184299919 184300065 147 * EPHB3 0.04 1 NA 2.1229828017646 6 0.924803546706002 9 9 0 -5.7644101350481 LTS-023 chr3 184300066 184402645 102580 * EPHB3 NA 0 NA 1.59763018140243 15 0.424817305270328 7 NA NA -5.7650278922967 LTS-023 chr3 184402646 184428114 25469 * character(0) NA 0 NA 0.847 1 NA NA NA NA NA LTS-023 chr3 184428115 191000284 6572170 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, IGF2BP2, CLDN16, RPL39L, TMEM207, RTP1, CRYGS, DGKG, EHHADH, AHSG, EIF4A2, LIPH, ETV5, VPS8, LOC253573, UTS2B, FETUB, C3orf70, TPRG1, HRG, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, IL1RAP, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, P3H2, MASP1, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, ST6GAL1, SST, SNORA81, NA NA NA NA NA NA NA NA NA LTS-023 TP63, TMEM41A, CLDN1, MAP3K13, ADIPOQ) 0.290817548862398 155 0.115814085447042 1.15881581049276 4432 0.859121554205064 4 3 1 -6.91419680161296 LTS-023 NA NA NA NA LTS-023 chr3 191000285 191046822 46538 * UTS2B NA 0 NA 1.65 1 NA NA NA NA NA LTS-023 chr3 191046823 191115947 69125 * c(CCDC50, UTS2B) 0.293280447681999 8 0.224596145495484 1.71570015098523 200 0.491876365124245 7 5 2 -6.73317706371507 LTS-023 chr3 191115948 191860535 744588 * c(CCDC50, PYDC2, FGF12) 0.427 1 NA 1.97130422818357 37 0.813736869136573 8 8 0 -5.76540237423166 LTS-023 chr3 191860536 193160200 1299665 * c(MB21D2, FGF12, ATP13A5, HRASLS, ATP13A4, MGC2889) 0.343378762912944 16 0.211870361306153 1.74724191264117 416 0.676855130050734 8 5 3 -6.75101139649639 LTS-023 chr3 193160201 194947585 1787385 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, GP5, HES1, LINC00884, OPA1, LSG1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.326037188929193 59 0.0926656508752475 2.05152118153122 1159 0.90996880836623 9 6 3 -6.73855138275642 LTS-023 chr3 194947586 194968486 20901 * XXYLT1 NA 0 NA 0.993 1 NA NA NA NA NA LTS-023 chr3 194968487 195451968 483482 * c(MIR5692C1, XXYLT1, MUC20, ACAP2, APOD, PPP1R2, MIR570, SDHAP2) 0.268661322159636 8 0.176670799592268 1.72182033558303 452 0.67736321500267 8 6 2 -6.74107547086715 LTS-023 chr3 195451969 195452005 37 * MUC20 NA 0 NA 6.017 1 NA NA NA NA NA LTS-023 chr3 195452006 195477787 25782 * c(MUC20, MUC4) 0.343671051342068 14 0.0885394305901657 2.64938131145337 89 4.0241278700997 20 13 7 -6.73351120096836 LTS-023 chr3 195477788 195477880 93 * MUC4 NA 0 NA 1.757 1 NA NA NA NA NA LTS-023 chr3 195477881 195925325 447445 * c(TNK2, ZDHHC19, SDHAP1, LINC00885, MUC4, TFRC) 0.306427214913682 16 0.161072447468005 1.81699219959117 538 0.676643895527191 7 5 2 -6.74180217444559 LTS-023 chr3 195925326 195925419 94 * ZDHHC19 0.39 1 NA 2.402 1 NA NA NA NA NA LTS-023 chr3 195925420 197398787 1473368 * c(MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, CEP19, RUBCN) 0.297171499855012 82 0.114456675748102 2.07395846470547 1936 0.710800124479473 10 7 3 -6.76352800377026 LTS-023 chr3 197398788 197769630 370843 * c(MIR922, RPL35A, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.34272681572401 35 0.148117032991432 1.74087449780438 749 0.532932522453227 8 5 3 -6.75283635733297 LTS-023 chr3 197769631 197770512 882 * LMLN NA 0 NA 1.67735442960357 25 0.581720571523247 7 NA NA -5.76441019342081 LTS-023 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.356 1 NA 0.650963654932144 11 0.090066036379375 3 3 0 -5.77437181974454 LTS-023 chr4 60304 266346 206043 * c(ZNF595, ZNF718, ZNF876P, ZNF732) 0.255045625959531 3 0.240069434400411 0.737410405749215 122 0.217624824921618 3 2 1 -6.80838687553748 LTS-023 chr4 266347 289295 22949 * ZNF732 NA 0 NA 1.261 1 NA NA NA NA NA LTS-023 chr4 289296 434079 144784 * c(ZNF721, ZNF732, ZNF141, ABCA11P) 0.278972711543746 15 0.0339197933506733 1.30550732782737 155 0.517331418983468 7 5 2 -6.84745429786242 LTS-023 chr4 434080 434096 17 * c(ZNF721, ABCA11P) 0 1 NA 3.166 1 NA NA NA NA NA LTS-023 chr4 434097 481678 47582 * c(ZNF721, ABCA11P) 0.27 1 NA 1.37743385686177 80 0.318774861030973 6 6 0 -5.76491467712722 LTS-023 chr4 481679 492998 11320 * c(ZNF721, PIGG) NA 0 NA 1.882 1 NA NA NA NA NA LTS-023 chr4 492999 731182 238184 * c(PCGF3, MYL5, PDE6B, ATP5I, PIGG, MFSD7) 0.0766305494494307 14 0.135653242489084 1.67294889052603 370 1.16592491834913 12 11 1 -6.7700114658865 LTS-023 chr4 731183 761026 29844 * PCGF3 0.243 1 NA 1.6841990187348 49 0.643998935753547 7 7 0 -5.76441463180057 LTS-023 chr4 761027 1817558 1056532 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, TACC3, CPLX1, SLC26A1, CTBP1, FAM53A, DGKQ, FGFR3, GAK, CRIPAK, RNF212, IDUA, LETM1, FGFRL1, UVSSA, SLBP, TMEM175, CTBP1-AS2, TMEM129) 0.212759407526321 77 0.0990948957289688 1.58808654400255 1943 0.637499130431582 6 5 1 -6.80926603572508 LTS-023 chr4 1817559 1943186 125628 * c(LETM1, WHSC1) 0 1 NA 1.53041727380503 175 0.608212900889057 6 6 0 -5.76521717616604 LTS-023 chr4 1943187 2271805 328619 * c(MIR943, MIR4800, MXD4, NAT8L, POLN, C4orf48, ZFYVE28, SCARNA22, WHSC1, NELFA, HAUS3) 0.0865684399005096 16 0.111037062130924 1.61991281286469 930 0.706292848234468 10 9 1 -6.81654664710429 LTS-023 chr4 2271806 2305996 34191 * ZFYVE28 0.222 1 NA 1.71803038955304 35 0.299476854789518 7 7 0 -5.7646172831837 LTS-023 chr4 2305997 3475187 1169191 * c(HTT-AS, MFSD10, ADD1, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, CFAP99, ZFYVE28, RGS12, RNF4, SH3BP2, TNIP2, NOP14, FAM193A) 0.20096430811283 52 0.10570537329145 1.63150499136503 1951 0.587188586679725 6 5 1 -6.78677320128425 LTS-023 chr4 3475188 3495446 20259 * DOK7 0.316 1 NA 1.55635172233013 36 0.673310207052169 7 7 0 -5.76453681883799 LTS-023 chr4 3495447 3498543 3097 * DOK7 0.278694938855951 3 0.0490543915805031 1.62066768678561 23 0.444503729137778 11 8 3 -6.73524271780207 LTS-023 chr4 3498544 4304605 806062 * c(LOC100133461, OTOP1, ADRA2C, ZBTB49, LINC00955, FAM86EP, LRPAP1, LYAR, TMEM128) 0.32822919386932 53 0.0779940593547348 1.33402267469681 431 0.707836968931317 6 4 2 -6.74325629456556 LTS-023 chr4 4304606 4308001 3396 * ZBTB49 0 1 NA 1.18733239246595 9 0.639475653259067 5 5 0 -5.76441148324228 LTS-023 chr4 4308002 23891745 19583744 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, CRMP1, LINC01085, JAKMIP1, TRMT44, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, NA NA NA NA NA NA NA NA NA LTS-023 LINC01097, LINC01096, FAM200B, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, STX18, CYTL1, SH3TC1, DCAF16, PPP2R2C, BLOC1S4, STK32B, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, CPZ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 ZNF518B, PROM1, LDB2, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.25368541648969 308 0.112556442872828 1.33134969418967 7759 0.524253336899074 5 4 1 -7.18711725541317 LTS-023 NA NA NA NA LTS-023 chr4 24521822 24808737 286916 * c(DHX15, SOD3, MIR573, CCDC149) 0.307417949575887 3 0.263393242130469 0.765314394018027 147 0.266797565778268 3 2 1 -6.74385465017851 LTS-023 chr4 24808738 25000921 192184 * c(LGI2, CCDC149) 0.42 1 NA 0.790271696731739 115 0.220556824975965 3 3 0 -5.77193051306315 LTS-023 chr4 25000922 25003120 2199 * LGI2 0.42443648474859 15 0.0495010341402317 0.740345696988167 59 0.196161424597937 4 2 2 -6.9181704976114 LTS-023 chr4 25003121 25005702 2582 * LGI2 0 1 NA 0.755762896086449 51 0.362768722304381 3 3 0 -5.76441174879075 LTS-023 chr4 25005703 36083817 11078115 * c(MIR4275, SLC34A2, ARAP2, SEL1L3, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, SMIM20, PCDH7, SEPSECS, LGI2, TBC1D19, PI4K2B, STIM2, CCKAR) 0.271372956538271 29 0.224514829948926 0.757102057915997 1548 0.245458707779577 3 2 1 -6.80922309125399 LTS-023 chr4 36083818 36163030 79213 * ARAP2 0.497 1 NA 0.676310393854842 81 0.160943857629429 3 3 0 -5.78247105427912 LTS-023 chr4 36163031 38698943 2535913 * c(MIR4801, PTTG2, ARAP2, TBC1D1, DTHD1, KLF3, PGM2, C4orf19, NWD2, RELL1, KLF3-AS1) 0.422316565999192 24 0.132663653377767 0.7399759284963 874 0.189305095316859 3 2 1 -6.95717363025902 LTS-023 chr4 38698944 38702699 3756 * KLF3 0.294 1 NA 1.29565763315406 82 0.364547562911634 5 5 0 -5.76449524698171 LTS-023 chr4 38702700 38773815 71116 * KLF3 NA 0 NA 0.981 1 NA NA NA NA NA LTS-023 chr4 38773816 39552863 779048 * c(UGDH-AS1, TLR6, LIAS, KLB, SMIM14, LOC401127, KLHL5, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, TMEM156, TLR10, FAM114A1) 0.42527324639004 17 0.122557249527577 0.737487760504213 1127 0.229150233039553 3 2 1 -7.00917383074093 LTS-023 chr4 39552864 39863952 311089 * c(UGDH-AS1, SMIM14, PDS5A, UBE2K) 0 1 NA 0.770860082636047 251 0.223021797230317 3 3 0 -5.7681293251842 LTS-023 chr4 39863953 40438947 574995 * c(PDS5A, LOC344967, RHOH, RBM47, CHRNA9, N4BP2) 0.204779054524023 14 0.227879329933605 0.72724465792658 526 0.316082979345002 3 2 1 -6.94086567149455 LTS-023 chr4 40438948 40440215 1268 * RBM47 0.493 1 NA 0.772799581787487 11 0.14514231260763 3 3 0 -5.7644518597827 LTS-023 chr4 40440216 42040947 1600732 * c(MIR4802, UCHL1-AS1, SLC30A9, LIMCH1, DCAF4L1, APBB2, RBM47, TMEM33, UCHL1, NSUN7, PHOX2B) 0.375731167029769 30 0.160447753518693 0.804666881705113 1062 1.43594653265353 4 2 2 -6.76076424172372 LTS-023 chr4 42040948 42115131 74184 * c(SLC30A9, BEND4) 0 1 NA 0.802757628408508 119 0.221384427649244 3 3 0 -5.7691191858929 LTS-023 chr4 42115132 42399845 284714 * BEND4 0.279406860559466 12 0.219203292250215 0.764450556115882 160 0.370918767488883 3 2 1 -6.77981145682059 LTS-023 chr4 42399846 42410946 11101 * c(ATP8A1, SHISA3) 0.44 1 NA 0.784990257916167 53 0.166130808621684 3 3 0 -5.76500506662668 LTS-023 chr4 42410947 47663760 5252814 * c(ATP8A1, CORIN, GNPDA2, COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, KCTD8, GRXCR1, COMMD8, ATP10D, GUF1) 0.42053184610354 51 0.130123389406318 0.760520287301054 1757 0.228816600504031 3 2 1 -6.97169497472263 LTS-023 chr4 47663761 47663799 39 * CORIN 0.493 1 NA 1.017 1 NA NA NA NA NA LTS-023 chr4 47663800 49019276 1355477 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, SLC10A4, FRYL, ZAR1, OCIAD1, SLAIN2, TEC, TXK, CWH43) 0.200378269176788 9 0.246653603257686 0.769967275139557 1319 0.239844769271728 3 2 1 -6.93342676564154 LTS-023 chr4 49019277 49064107 44831 * CWH43 NA 0 NA 0.766175736043064 39 0.12675398297383 3 NA NA -5.76548968875384 LTS-023 chr4 52709193 52780812 71620 * DCUN1D4 0 1 NA 1.14501733946639 101 0.387233066923283 5 5 0 -5.76520722975185 LTS-023 chr4 52780813 55130078 2349266 * c(ERVMER34-1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, FIP1L1, LNX1) 0.295272731672812 23 0.148362418134191 1.08782198398513 990 0.311486792237021 4 3 1 -6.92095835790807 LTS-023 chr4 55130079 55130682 604 * PDGFRA 0.427 1 NA 1.01488873400909 13 0.1834861484327 4 4 0 -5.76442569409923 LTS-023 chr4 55130683 55602765 472083 * c(KIT, PDGFRA) 0.373926924400242 9 0.0428216585905362 1.07840720334126 274 0.302292570667548 5 3 2 -6.78789585634148 LTS-023 chr4 55602766 55605759 2994 * KIT 0 1 NA 1.0423412572263 33 0.595753625734462 4 4 0 -5.76443134207913 LTS-023 chr4 55605760 56291528 685769 * c(SRD5A3-AS1, KDR, KIT, TMEM165, SRD5A3) 0.220791984862768 10 0.169508570743652 1.09008481732729 346 0.319032725704385 5 4 1 -6.77535474547185 LTS-023 chr4 56291529 56300685 9157 * c(TMEM165, CLOCK) 0.321 1 NA 1.08757301791728 62 0.282537149085624 5 5 0 -5.76515745541535 LTS-023 chr4 56300686 57180473 879788 * c(NMU, PDCL2, EXOC1, KIAA1211, LOC644145, CLOCK, CEP135) 0.34219937621712 9 0.0350962961008708 1.05056100289733 463 0.289389916742745 6 4 2 -7.31875604653234 LTS-023 chr4 57180474 57180982 509 * KIAA1211 0 1 NA 1.13242302003518 10 0.579663781859795 5 5 0 -5.76441382740156 LTS-023 chr4 57180983 57219585 38603 * c(AASDH, KIAA1211) 0.300378024205135 10 0.19694784983735 1.03518974889751 136 0.404494730408326 4 3 1 -6.75269640398232 LTS-023 chr4 57219586 57219592 7 * AASDH 0.385 1 NA 1.14 1 NA NA NA NA NA LTS-023 chr4 57219593 57906986 687394 * c(THEGL, PAICS, ARL9, AASDH, IGFBP7, POLR2B, PPAT, REST, SPINK2, SRP72, NOA1, HOPX) 0.346411956722233 31 0.10529702994923 0.98923365419498 909 0.247375286872027 4 2 2 -6.86797397111292 LTS-023 chr4 57906987 62383035 4476049 * c(ADGRL3, IGFBP7-AS1, IGFBP7) 0 1 NA 1.01536140518381 27 0.327068177285092 4 4 0 -5.80142575627974 LTS-023 chr4 62383036 69363297 6980262 * c(FTLP10, EPHA5-AS1, CENPC, TMPRSS11B, EPHA5, ADGRL3, TECRL, STAP1, GNRHR, TMPRSS11A, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113, UBA6, TMPRSS11GP, TMPRSS11D) 0.0294536608990346 60 0.0239072832436142 1.07304862261745 1728 0.442111285887059 4 4 0 -6.91616172178146 LTS-023 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 2.217 1 NA NA NA NA NA LTS-023 chr4 69402959 69512430 109472 * UGT2B17 0.0164253487444214 3 0.0221208800307161 1.9114172905121 44 0.600631613906293 8 8 0 -6.73336237327839 LTS-023 chr4 69512431 69512573 143 * character(0) NA 0 NA 1.328 1 NA NA NA NA NA LTS-023 chr4 69512574 83795948 14283375 * c(FAM47E, CSN1S2BP, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, PCAT4, ANTXR2, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, RASGEF1B, DCK, RASSF6, AFM, AFP, EREG, ALB, FGF5, SEC31A, RUFY3, CNOT6L, C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, GK2, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, NA NA NA NA NA NA NA NA NA LTS-023 HNRNPD, HTN1, HTN3, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, ART3, CXCL9, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, BMP2K, SEPT11, PRKG2, PRDM8, UTP3, UGT2A2, SHROOM3, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, SCD5, FRAS1, NAA11, CABS1, USO1, SLC4A4, STBD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.0290147114527035 273 0.0208185230701572 1.05900463765468 8736 0.409117840592999 4 4 0 -7.04999851226996 LTS-023 NA NA NA NA LTS-023 chr4 83795949 83796794 846 * SEC31A NA 0 NA 0.69 1 NA NA NA NA NA LTS-023 chr4 83796795 84465804 669010 * c(THAP9-AS1, HPSE, HELQ, LIN54, SEC31A, COQ2, MRPS18C, COPS4, PLAC8, THAP9, FAM175A, GPAT3) 0.0439562598144234 14 0.0361076686628164 0.719309700339038 775 0.200329566549245 3 3 0 -6.7583174472403 LTS-023 chr4 84465805 84502671 36867 * GPAT3 NA 0 NA 0.822 1 NA NA NA NA NA LTS-023 chr4 84502672 87812786 3310115 * c(MIR4451, CDS1, C4orf36, WDFY3, SLC10A6, WDFY3-AS2, NKX6-1, MAPK10, PTPN13, ARHGAP24, GPAT3) 0.0399684408182147 30 0.021841013828517 0.811680738600728 1339 0.305639834211323 3 3 0 -6.87741453343981 LTS-023 chr4 87812787 87869572 56786 * c(LOC100506746, C4orf36, AFF1) NA 0 NA 0.692 1 NA NA NA NA NA LTS-023 chr4 87869573 89859009 1989437 * c(MIR5705, PYURF, FAM13A, PPM1K, DMP1, DSPP, NAP1L5, FAM13A-AS1, IBSP, HSD17B13, AFF1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MEPE, KLHL8, SPP1, SPARCL1, HERC3, ABCG2) 0.0499625612035146 58 0.024610511036517 0.744263507964891 2015 0.253475249059562 3 3 0 -6.84912007889616 LTS-023 chr4 89859010 90165500 306491 * c(FAM13A, TIGD2, GPRIN3) 0.094 1 NA 0.775438342925254 117 0.195947544813152 3 3 0 -5.77110655630262 LTS-023 chr4 90165501 90166957 1457 * GPRIN3 0.11354534806978 14 0.114976729609292 0.60329500828691 42 0.339170999495763 1 1 0 -6.7452736955252 LTS-023 chr4 90166958 90167253 296 * GPRIN3 0.024 1 NA 0.624094004832199 9 0.240490644308672 3 3 0 -5.76450897560871 LTS-023 chr4 90167254 90168415 1162 * GPRIN3 0.0729271305196499 10 0.0284731842655897 0.640559607209717 32 0.351182425195409 15 14 1 -6.7517862443764 LTS-023 chr4 90168416 90168438 23 * GPRIN3 NA 0 NA 1.061 1 NA NA NA NA NA LTS-023 chr4 90168439 95444925 5276487 * c(PDLIM5, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, SMARCAD1, SNCA-AS1, SNCA) 0.0534508959918905 19 0.0263678432545162 0.835433082387613 888 0.290182464173121 3 3 0 -7.3445706905118 LTS-023 chr4 95444926 95444960 35 * PDLIM5 NA 0 NA 1.104 1 NA NA NA NA NA LTS-023 chr4 95444961 95589390 144430 * PDLIM5 0.0312778823374664 10 0.0161038297722415 1.27457766245986 196 1.00469345778353 4 4 0 -6.74252042053612 LTS-023 chr4 95589391 98865141 3275751 * c(STPG2-AS1, STPG2, PDHA2, BMPR1B, UNC5C) 0.0362908109852797 21 0.0256456624012717 0.85044290223845 545 0.338896824112319 3 3 0 -7.01499104340844 LTS-023 chr4 98865142 103716492 4851351 * c(MIR3684, LOC100507053, LINC01216, TSPAN5, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, EIF4E, METAP1, LOC256880, DAPP1, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, EMCN, BANK1, PPP3CA, RAP1GDS1, SLC39A8, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.0442634917727807 88 0.0273827866783056 0.761064201187703 2604 0.603303526510549 3 3 0 -6.75755235800838 LTS-023 chr4 103716493 103717511 1019 * UBE2D3 0.052 1 NA 0.737213211566184 21 0.196202846928522 3 3 0 -5.76441287359865 LTS-023 chr4 103717512 103866480 148969 * c(SLC9B1, CISD2, UBE2D3) 0.164901075328505 9 0.168654232084463 0.674851944960225 147 0.276959450681464 2 2 0 -7.05490918500878 LTS-023 chr4 103866481 104000973 134493 * c(SLC9B2, SLC9B1, BDH2) 0.048 1 NA 0.716694667157317 107 0.239530486196786 3 3 0 -5.76681579823928 LTS-023 chr4 104000974 104059612 58639 * c(CENPE, BDH2) 0.0465354178721001 2 0.0544472221513642 0.769947543131848 109 0.282249950679379 3 3 0 -6.74477467687831 LTS-023 chr4 104059613 104060923 1311 * CENPE NA 0 NA 0.825 1 NA NA NA NA NA LTS-023 chr4 104060924 141463870 37402947 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, GIMD1, SEC24B-AS1, LINC00499, ARHGEF38-IT1, SPRY1, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, MGAT4D, SPATA5, BBS12, SGMS2, SYNPO2, EGF, ELF2, ENPEP, FABP2, FGF2, HSPA4L, SLC7A11, ELMOD2, NPNT, MFSD8, NOCT, PPA2, DKK2, INTU, LINC01091, RPL34-AS1, ANK2, HADH, ANXA5, NA NA NA NA NA NA NA NA NA LTS-023 CFI, LRIT3, IL2, LINC01061, C4orf3, MAD2L1, MGST2, MIR302B, NDUFC1, LEF1, LARP7, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, TET2, ARHGEF38, MCUB, LARP1B, BBS7, ZGRF1, AP1AR, MAML3, INTS12, ANKRD50, PCDH10, METTL14, OSTC, IL21, SCOC, RPL34, NEUROG2, SLC7A11-AS1, LINC00616, LEF1-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TNIP3, JADE1, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP6, QRFPR, KIAA1109, COL25A1, MGARP, PRSS12, PDE5A, CCNA2, PAPSS1, AIMP1, TIFA, NDST3, TBCK, SEC24D) 0.041072230576537 261 0.0251001765404885 0.791266785718269 12234 0.604823823034535 3 3 0 -6.93400658759625 LTS-023 NA NA NA NA LTS-023 chr4 141463871 141464570 700 * ELMOD2 NA 0 NA 0.956 1 NA NA NA NA NA LTS-023 chr4 141464571 144794616 3330046 * c(FREM3, TBC1D9, GAB1, ELMOD2, ZNF330, GYPE, IL15, GUSBP5, RNF150, TNRC18P1, UCP1, USP38, SMARCA5, INPP4B) 0.042269026463575 45 0.0234409854310735 0.860827387574848 1586 0.29295228340787 3 3 0 -7.17982130606727 LTS-023 chr4 144794617 144801604 6988 * GYPE 0.202 1 NA 0.76502330430645 17 0.1978272419235 3 3 0 -5.76447127376915 LTS-023 chr4 144801605 144938007 136403 * c(GYPA, GYPB, GYPE) 0.200056127335668 12 0.145323124815222 0.681533876335764 74 0.425003334481768 5 4 1 -6.88409802625444 LTS-023 chr4 144938008 144940318 2311 * c(GYPA, GYPB) 0.025 1 NA 3.07982880596364 7 2.37594787100102 13 13 0 -5.76441016233398 LTS-023 chr4 144940319 155471549 10531231 * c(MIR3140, LINC01095, MIR4799, ANAPC10, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, GYPA, GYPB, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, TMEM184C, ABCE1, RPS3A, SFRP2, HHIP, HHIP-AS1, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.0369529008070133 104 0.0285084513103835 0.824276856417655 4654 0.310853494971388 3 3 0 -7.31168487354508 LTS-023 chr4 155471550 159047522 3575973 * c(CTSO, RBM46, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, PLRG1, PDGFC, TDO2, MAP9, LRAT) 0.0409307678492812 34 0.0318844840142602 0.905784388294056 1454 0.483002515511887 4 4 0 -6.85419271627707 LTS-023 chr4 159047523 168155522 9108000 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, KLHL2, CPE, FAM218A, C4orf45, TRIM60, C4orf46, TMEM192, ETFDH, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, SPOCK3, FAM198B, PPID, MARCH1, TMEM144, TMA16, FSTL5, FNIP2, RXFP1, MSMO1, MIR578, TLL1, TKTL2, NAF1, RAPGEF2) 0.0400479493628839 58 0.025908910192137 0.75755742338669 2460 0.326183706178724 3 3 0 -6.74410225643638 LTS-023 chr4 169013680 173962756 4949077 * c(LOC100506085, LOC100506122, ANXA10, CLCN3, PALLD, GALNTL6, NEK1, AADAT, HPF1, DDX60, SH3RF1, CBR4, DDX60L, MFAP3L) 0.0340737125395647 54 0.0667029356268814 1.13229303271297 1704 0.43720219258971 5 5 0 -6.80816783705433 LTS-023 chr4 173962757 174089947 127191 * GALNT7 NA 0 NA 0.85 1 NA NA NA NA NA LTS-023 chr4 174089948 184614834 10524887 * c(CLDN24, MIR1305, MIR4276, ADAM29, SCRG1, WDR17, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, ING2, LOC389247, FAM92A1P2, GALNT7, CLDN22, NEIL3, CDKN2AIP, TENM3, SPCS3, TRAPPC11, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, SAP30, LOC90768, HAND2) 0.0331798472513827 91 0.0278151011768761 1.00719895788342 2590 0.72170698034644 4 4 0 -6.75178380144604 LTS-023 chr4 184614835 184614874 40 * TRAPPC11 0.033 1 NA 0.073 1 NA NA NA NA NA LTS-023 chr4 184614875 186082417 1467543 * c(MIR3945, LINC01093, ENPP6, PRIMPOL, ACSL1, SLC25A4, IRF2, HELT, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3) 0.0456138663923635 22 0.0203586883289713 0.871693366002424 846 0.32919948647507 3 3 0 -6.98263490068514 LTS-023 chr4 186082418 187560988 1478571 * c(F11, FAT1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, ANKRD37, KLKB1, C4orf47, MTNR1A, UFSP2, LRP2BP, CFAP97, FLJ38576, TLR3, SNX25, SORBS2) 0.0377995402129045 63 0.0179968137363117 0.981214055641705 1672 0.339233723833701 4 4 0 -6.84212562700098 LTS-023 chr4 187560989 187584445 23457 * FAT1 NA 0 NA 1.305 1 NA NA NA NA NA LTS-023 chr4 187584446 187629538 45093 * FAT1 0.0385349026076282 2 0.00212132034355964 1.20328411638491 46 0.368915345145818 3 3 0 -6.81215056063697 LTS-023 chr4 187629539 187629770 232 * FAT1 0.034 1 NA 1.02357958865014 5 0.578914760564973 4 4 0 -5.76441103186263 LTS-023 chr4 187629771 190878661 3248891 * c(ZFP42, TRIML2, FAT1, FRG1, LOC339975, TRIML1, LINC01060) 0.186719126230469 9 0.175917594344625 1.23755234540428 299 0.516531257686743 5 4 1 -6.7533610103117 LTS-023 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 1.19541460356168 46 0.615417146929056 5 NA NA -5.76442537845685 LTS-023 chr5 140347 143197 2851 * PLEKHG4B 0.055 1 NA 0.560074440297018 11 0.387552694364381 2 2 0 -5.76448329582891 LTS-023 chr5 143198 712144 568947 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.0524653708863831 33 0.0596654022635625 0.529170937552743 1071 0.224261629053153 2 2 0 -6.73887509022572 LTS-023 chr5 712145 716871 4727 * character(0) NA 0 NA 1.107 1 NA NA NA NA NA LTS-023 chr5 716872 767084 50213 * character(0) 0.261484533597772 6 0.168047314765812 1.14544036416734 62 0.722066926595688 4 3 1 -6.73476857881999 LTS-023 chr5 767085 795968 28884 * ZDHHC11 0.463 1 NA 1.07773869917819 11 0.786125412155315 4 4 0 -5.76468019256397 LTS-023 chr5 795969 796064 96 * ZDHHC11 0.155413299948488 3 0.240039580069621 0.741536036462685 9 0.651655392059331 7 6 1 -6.73312514171623 LTS-023 chr5 796065 796121 57 * ZDHHC11 NA 0 NA 0.421 1 NA NA NA NA NA LTS-023 chr5 796122 843723 47602 * ZDHHC11 0.370821252884201 9 0.187161769006861 0.543154543865341 93 0.489549089837218 2 1 1 -6.74478408707823 LTS-023 chr5 843724 896726 53003 * c(BRD9, ZDHHC11, TRIP13) 0.076 1 NA 0.546553595813929 135 0.211522091103685 2 2 0 -5.76661655327931 LTS-023 chr5 896727 11904141 11007415 * c(SNORD123, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4636, MIR4635, MARCH6, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, CCT5, ICE1, LINC01018, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, NSUN2, MRPL36, ANKRD33B, SLC6A3, SRD5A1, TERT, SDHAP3, LOC728613, NA NA NA NA NA NA NA NA NA LTS-023 LOC729506, FASTKD3, IRX1, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, SEMA5A, TRIP13) 0.0471867944404607 148 0.0436549355899255 0.552874847708744 3713 0.297081023903295 2 2 0 -7.07794101425179 LTS-023 NA NA NA NA LTS-023 chr5 13690454 13766232 75779 * DNAH5 0 5 0 0.973620129477381 155 0.487268379488072 0 0 0 -Inf LTS-023 chr5 13766233 13811775 45543 * DNAH5 0.418 1 NA 0.897133991992922 79 0.217591884436601 4 4 0 -5.7686043255376 LTS-023 chr5 13811776 14826220 1014445 * c(LOC100130744, MIR4637, DNAH5, FAM105A, ANKH, TRIO, OTULIN) 0.376894435616493 34 0.148952459247454 0.8871912873016 1123 0.241127757352951 4 2 2 -6.8394186435306 LTS-023 chr5 14826221 14871150 44930 * ANKH NA 0 NA 1.348 1 NA NA NA NA NA LTS-023 chr5 14871151 15500889 629739 * c(FBXL7, ANKH) 0.322 1 NA 1.23899547154718 21 0.254980568820823 5 5 0 -5.76837796277168 LTS-023 chr5 15500890 16067211 566322 * FBXL7 0 1 NA 1.29320536709497 101 0.32195007945855 5 5 0 -5.77995965343633 LTS-023 chr5 16067212 26915990 10848779 * c(CDH9, CDH10, CDH12, CDH18, BASP1, LOC285696, LOC340107, LOC401177, MARCH11, MYO10, PMCHL1, FAM134B, PRDM9, GUSBP1, ZNF622) 0.240545860890032 17 0.144702255155401 1.23796486765857 990 0.39302385548329 5 4 1 -6.77812546979097 LTS-023 chr5 26915991 26988206 72216 * CDH9 NA 0 NA 1.81 1 NA NA NA NA NA LTS-023 chr5 26988207 32101023 5112817 * c(CDH6, MIR4279, CDH9, PDZD2, DROSHA, C5orf22, LINC01021, LSP1P3) 0.244579365689242 16 0.201297126987281 1.50616484413847 744 0.487018697642755 6 5 1 -6.82054101162378 LTS-023 chr5 32101024 32109427 8404 * PDZD2 0.477 1 NA 1.86547842683961 39 2.55168810943408 8 8 0 -5.76441035385714 LTS-023 chr5 32109428 33524190 1414763 * c(SUB1, PDZD2, LOC340113, NPR3, ZFR, MTMR12, GOLPH3, TARS) 0.441895917966592 25 0.0966160787170886 1.41441987894082 844 0.371705660098845 6 3 3 -6.86299895940841 LTS-023 chr5 33524191 33525008 818 * character(0) 0 1 NA 1.71863446919946 17 0.933889037998689 7 7 0 -5.76441065565828 LTS-023 chr5 33525009 33986707 461699 * c(SLC45A2, RXFP3, ADAMTS12) 0.190211083018786 13 0.238166070050032 1.56915952264863 367 0.606755473651751 6 5 1 -6.73972468229885 LTS-023 chr5 33986708 33987237 530 * AMACR 0.311 1 NA 1.36585952579599 13 0.399956167470182 6 6 0 -5.76441525876592 LTS-023 chr5 33987238 40829311 6842074 * c(MIR3650, EGFLAM-AS2, LOC100506548, EGFLAM-AS4, GDNF-AS1, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, DAB2, UGT3A2, RANBP3L, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, GDNF, IL7R, LIFR, WDR70, BRIX1, PRKAA1, PRLR, PTGER4, RAD1, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, MIR580, C9, SPEF2, OSMR, LMBRD2, NUP155) 0.402824179320668 125 0.121492399868496 1.48855331752688 4926 0.43750217249033 6 3 3 -6.76100784280752 LTS-023 chr5 40829312 40830073 762 * character(0) 0.296 1 NA 1.54658385358015 13 0.244836732622018 6 6 0 -5.76445122331355 LTS-023 chr5 40830074 41919457 1089384 * c(MROH2B, C5orf51, PLCXD3, OXCT1, RPL37, SNORD72, C6, C7, CARD6) 0.261162402929139 20 0.215079055233186 1.4565847459157 1003 0.507460187143065 7 5 2 -6.79170683847094 LTS-023 chr5 41919458 42566127 646670 * c(FBXO4, GHR, C5orf51) NA 0 NA 1.57283111172171 115 0.401278318361689 7 NA NA -5.77256279153169 LTS-023 chr5 42566128 42629010 62883 * GHR NA 0 NA 0.072 1 NA NA NA NA NA LTS-023 chr5 42629011 43040723 411713 * c(CCDC152, GHR, ANXA2R, SELENOP, LOC648987) 0.456 1 NA 1.32138591974261 259 0.841738238823634 6 6 0 -5.76686457982113 LTS-023 chr5 43040724 44809162 1768439 * c(LOC100132356, LOC100506639, NNT-AS1, PAIP1, MRPS30, LOC153684, NIM1K, FGF10, NNT, HMGCS1, C5orf34, CCL28, TMEM267, ZNF131) 0.41277226852716 18 0.146856127629126 1.33333670761196 755 0.426241201689868 6 3 3 -6.77279546653768 LTS-023 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.46857976478291 149 0.275907087499292 6 NA NA -5.76769892994178 LTS-023 chr5 49692017 49694583 2567 * EMB 0.378 1 NA 2.11113322130912 48 0.861540597815563 9 9 0 -5.76441025335991 LTS-023 chr5 49694584 51307473 1612890 * c(EMB, ISL1, LOC642366, PARP8) 0.413723073810524 7 0.0248921483126517 2.26202859030598 373 0.694348650972828 10 5 5 -7.00423265334348 LTS-023 chr5 51307474 51374724 67251 * character(0) NA 0 NA 0.917 1 NA NA NA NA NA LTS-023 chr5 51374725 51376661 1937 * character(0) 0.0433657148808284 2 0.0197989898732233 0.801685766432822 8 0.344964568573975 3 3 0 -6.76153990851739 LTS-023 chr5 51376662 51376825 164 * character(0) 0.036 1 NA 0.966492670223393 5 0.401286306768621 4 4 0 -5.76441020561598 LTS-023 chr5 51376826 58571842 7195017 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, GPBP1, MIR449B, MIR581, ANKRD55, PLPP1, HSPB3) 0.0779888533757879 113 0.0500659473438652 0.404958599558659 3603 0.166750248278203 2 2 0 -11.0677515459069 LTS-023 chr5 58571843 69337771 10765929 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, ERCC8, SREK1, MARVELD2, CCDC125, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GUSBP3, TAF9, GTF2H2C, ELOVL7, TRAPPC13, SERF1A, CCNB1, NDUFAF2, MRPS36) 0.0698664131213646 97 0.0434276811258961 0.433560215352284 4331 0.167232892506821 2 2 0 -10.448362087194 LTS-023 chr5 69337772 69372302 34531 * c(GUSBP3, SMN1, SMN2, SERF1A) NA 0 NA 0.064 1 NA NA NA NA NA LTS-023 chr5 69372303 70213188 840886 * c(GUSBP9, SMA4, SMA5, LOC441081, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.101824420633785 39 0.0801320772073884 0 NA NA -12.6391102952687 LTS-023 chr5 70213189 70247722 34534 * c(GUSBP9, SMN1, SMN2, SERF1A) NA 0 NA 0.449 1 NA NA NA NA NA LTS-023 chr5 70247723 70308346 60624 * c(GUSBP9, NAIP, SMN1, SMN2) 0.482 1 NA 0.426399537721172 41 0.163414443938732 2 2 0 -5.81447967378812 LTS-023 chr5 70308347 70378792 70446 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.132354248995302 39 0.0849991267717311 1 NA NA -8.08464612806939 LTS-023 chr5 70378793 70388840 10048 * c(GUSBP9, NAIP, LOC647859) NA 0 NA 0.64 1 NA NA NA NA NA LTS-023 chr5 70388841 78533529 8144689 * c(GUSBP9, NCRUPAR, MIR4804, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, JMY, TMEM171, TMEM174, POC5, CRHBP, ZNF366, S100Z, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, BHMT2, ANKRD31, FAM169A, DMGDH, HEXB, HMGCR, TNPO1, ARSB, MAP1B, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, BHMT, MCCC2, ARHGEF28, LOC647859, SNORA47, BTF3, TBCA, ZBED3-AS1, ANKDD1B, PTCD2, UTP15, ZBED3, GFM2, ENC1, AP3B1, NA NA NA NA NA NA NA NA NA LTS-023 PDE8B, SCAMP1, CARTPT) 0.0748372168973052 107 0.047703512556308 0.428202408185835 5163 0.185946919572271 2 2 0 -9.77188199662289 LTS-023 NA NA NA NA LTS-023 chr5 78533530 78573695 40166 * JMY NA 0 NA 0.07 1 NA NA NA NA NA LTS-023 chr5 78573696 78612177 38482 * JMY NA 0 NA 0.0888541781176681 53 0.0237608733035033 0 NA NA -9.70236500027223 LTS-023 chr5 78612178 78668460 56283 * JMY NA 0 NA 0.257 1 NA NA NA NA NA LTS-023 chr5 78668461 88015099 9346639 * c(CKMT2-AS1, MIR4280, MTRNR2L2, MIR3607, TMEM161B-AS1, MIR3977, EDIL3, CKMT2, ACOT12, COX7C, HAPLN1, VCAN, TMEM167A, TMEM161B, PAPD4, FAM151B, DHFR, CMYA5, SSBP2, SERINC5, RNU5E-1, NBPF22P, ANKRD34B, MTX3, MIR9-2, MEF2C, CRSP8P, MSH3, RASA1, RASGRF2, RPS23, LOC644936, LINC00461, SCARNA18, THBS4, XRCC4, ATG10, ZCCHC9, SPZ1, CCNH, ATP6AP1L, HOMER1, ZFYVE16) 0.0780701385475565 87 0.0510267159611538 0.430794552265546 3438 0.174319166882336 2 2 0 -10.1823973706187 LTS-023 chr5 88015100 88015102 3 * MEF2C NA 0 NA 0.582 1 NA NA NA NA NA LTS-023 chr5 88015103 90666091 2650989 * c(MIR3660, POLR3G, CETN3, LYSMD3, MBLAC2, MEF2C, ARRDC3, ADGRV1) 0.0527317345092151 27 0.0430485712559603 0.474086724854879 1208 0.198998475406165 2 2 0 -7.02304615762561 LTS-023 chr5 90666092 90666189 98 * ARRDC3 NA 0 NA 0.389 1 NA NA NA NA NA LTS-023 chr5 90666190 96369179 5702990 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.079078978742311 78 0.0408579730208678 0.413648299791075 2650 0.127934364646819 2 2 0 -11.4051515301025 LTS-023 chr5 96369180 96371242 2063 * character(0) NA 0 NA 0.67895840448008 42 0.149617064433849 3 NA NA -5.76491368883456 LTS-023 chr5 96371243 126890541 30519299 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, PRRC1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, NA NA NA NA NA NA NA NA NA LTS-023 RGMB-AS1, PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.0758399762759134 217 0.0478921809029073 0.443715719361114 8926 0.174829779495804 2 2 0 -12.0331574377176 LTS-023 NA NA NA NA LTS-023 chr5 126890542 127419918 529377 * c(PRRC1, CTXN3, LINC01184, SLC12A2) NA 0 NA 0.452122754580997 35 0.101722162380318 2 NA NA -6.2700846478708 LTS-023 chr5 127419919 127420005 87 * SLC12A2 NA 0 NA 0.685 1 NA NA NA NA NA LTS-023 chr5 127420006 127469859 49854 * SLC12A2 0.383 1 NA 0.864430751288501 29 0.110303321165315 4 4 0 -5.80102525514835 LTS-023 chr5 127469860 127595581 125722 * c(FBN2, SLC12A2) 0.144786459209229 3 0.269045225442366 0.92278196282209 196 0.341017436955491 5 4 1 -6.82035525119236 LTS-023 chr5 127595582 127597392 1811 * FBN2 NA 0 NA 0.651 1 NA NA NA NA NA LTS-023 chr5 127597393 127777820 180428 * FBN2 0.316527706279784 10 0.222118586945502 0.766950259503336 339 0.388704387309816 3 2 1 -6.74045932149802 LTS-023 chr5 127777821 127777997 177 * FBN2 0.418 1 NA 0.852145193234654 3 0.200435359488623 3 3 0 -5.76445575465445 LTS-023 chr5 127777998 134670427 6892430 * c(KIAA1024L, MIR1289-2, MIR3936, MIR3661, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, ADAMTS19, FBN2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, SLC27A6, HINT1, HSPA4, CHSY3, C5orf66-AS2, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, ISOC1, SAR1B, CDKL3, RAPGEF6, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, NA NA NA NA NA NA NA NA NA LTS-023 TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, H2AFY, FNIP1, DDX46) 0.377990305200943 139 0.151509790301449 0.704488121494195 5185 0.25560025948407 3 2 1 -6.97918160037689 LTS-023 NA NA NA NA LTS-023 chr5 134670428 137419728 2749301 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, PKD2L2, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, TRPC7, SPOCK1, TGFBI, WNT8A, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.389070036719136 41 0.153271347934182 0.775944773096129 1527 0.289611355924228 3 2 1 -6.82125920067029 LTS-023 chr5 137419729 137424648 4920 * WNT8A 0 1 NA 0.8825703027851 19 0.245999322492292 4 4 0 -5.76491397599952 LTS-023 chr5 137424649 137682363 257715 * c(KIF20A, BRD8, GFRA3, FAM53C, WNT8A, NME5, CDC23, CDC25C) 0.16861260667028 11 0.227194750259452 0.746568457683577 639 0.302314945769805 3 3 0 -6.92209137384424 LTS-023 chr5 137682364 137683305 942 * FAM53C 0.493 1 NA 0.876322230813355 19 0.298131657795875 4 4 0 -5.7644852575879 LTS-023 chr5 137683306 140553564 2870259 * c(SRA1, LINC01024, APBB3, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, SNORD63, SNORA74A, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, MZB1, PAIP2, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, NA NA NA NA NA NA NA NA NA LTS-023 PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2, PCDHA9, MATR3, SLC23A1) 0.361737656765934 104 0.156275268606531 0.76727545791695 4340 0.269299154503913 3 2 1 -6.76122692332837 LTS-023 NA NA NA NA LTS-023 chr5 140553565 140558897 5333 * c(PCDHB8, PCDHB7) 0.401920462590362 4 0.0394546152771341 0.293428012102137 67 0.220362960735336 2 1 1 -6.76450733170174 LTS-023 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.331 1 NA NA NA NA NA LTS-023 chr5 140559822 149366358 8806537 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSNK1A1, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, FGF1, ABLIM3, ARHGAP26, PCDHGA12, IL17B, RELL2, NR3C1, HTR4, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PCDH1, PCDHGC3, PCDH12, PDE6A, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, NA NA NA NA NA NA NA NA NA LTS-023 PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 KIAA0141, JAKMIP2) 0.372373693398841 217 0.140143711898319 0.781603688889903 7510 1.23074041450977 3 2 1 -6.77123477813209 LTS-023 NA NA NA NA LTS-023 chr5 149366359 149373383 7025 * c(SLC26A2, TIGD6) 0 1 NA 0.888021942531971 28 0.169608711684763 4 4 0 -5.76574558913865 LTS-023 chr5 149373384 149465997 92614 * c(CSF1R, HMGXB3, TIGD6) 0.241329278183737 17 0.190670488786591 0.787658903219329 355 0.410982454213899 4 3 1 -6.7575662287146 LTS-023 chr5 149465998 149495253 29256 * c(CSF1R, PDGFRB) 0.343 1 NA 0.770129089661134 50 0.186398126687617 3 3 0 -5.76488137420712 LTS-023 chr5 149495254 149682210 186957 * c(CDX1, ARSI, PDGFRB, SLC6A7, CAMK2A) 0.378760905400772 24 0.151745472439204 0.785413958012994 528 0.270801233201611 3 2 1 -6.77495694296495 LTS-023 chr5 149682211 149771038 88828 * c(ARSI, TCOF1) 0 1 NA 0.777911141658745 135 0.321851342513469 3 3 0 -5.76525795438065 LTS-023 chr5 149771039 150058121 287083 * c(SYNPO, NDST1, RPS14, TCOF1, MYOZ3, CD74) 0.2129446831078 16 0.22448132810251 0.793107176271023 632 1.27749637079395 5 4 1 -6.75165197521681 LTS-023 chr5 150058122 150058289 168 * MYOZ3 0.369 1 NA 0.918259411784291 5 0.292511196366908 4 4 0 -5.764414636716 LTS-023 chr5 150058290 151191673 1133384 * c(LOC100652758, G3BP1, TNIP1, ZNF300P1, SLC36A2, SLC36A1, FAT2, CCDC69, GM2A, SLC36A3, GPX3, ANXA6, IRGM, ATOX1, DCTN4, RBM22, SPARC, SMIM3, ZNF300, MYOZ3) 0.354773521505029 98 0.179892736642765 0.794927862052594 2086 0.32859479407546 3 2 1 -6.7611463811466 LTS-023 chr5 151191674 151231185 39512 * GLRA1 0 1 NA 0.800951852249559 35 0.287161296284917 3 3 0 -5.7658098571077 LTS-023 chr5 151231186 153434993 2203808 * c(FAM114A2, GLRA1, GRIA1, MFAP3, NMUR2) 0.0802685610842264 9 0.207031398584852 0.826158993073572 451 0.494430241998814 3 3 0 -6.81115729961406 LTS-023 chr5 153434994 153709103 274110 * c(MFAP3, GALNT10) 0.436 1 NA 0.801293371014885 57 0.189213356387938 3 3 0 -5.78697083561288 LTS-023 chr5 153709104 156589585 2880482 * c(MIR3141, FAXDC2, PPP1R2P3, FAM71B, LARP1, GEMIN5, HAVCR1, KIF4B, MRPL22, SAP30L-AS1, GALNT10, SGCD, SAP30L, HAVCR2, TIMD4, CNOT8, HAND1, MED7) 0.3609102874489 62 0.171908474289438 0.806096765335593 1526 0.407140265402382 3 2 1 -6.80146585679039 LTS-023 chr5 156589586 156590443 858 * FAM71B 0 1 NA 0.843317526959911 17 0.504642833800186 3 3 0 -5.76443985696875 LTS-023 chr5 156590444 156917229 326786 * c(FAM71B, CYFIP2, NIPAL4, ITK, FNDC9, ADAM19) 0.180699014208703 13 0.23523940342357 0.770341514388923 669 0.302492837229118 4 3 1 -6.92792656474385 LTS-023 chr5 156917230 157002604 85375 * ADAM19 NA 0 NA 0.786612243249552 98 0.164454118719771 3 NA NA -5.76947226387695 LTS-023 chr5 157002605 157002695 91 * ADAM19 0.419 1 NA 0.079 1 NA NA NA NA NA LTS-023 chr5 157002696 159835658 2832963 * c(C5orf52, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, LOC285626, LOC285627, IL12B, THG1L, ZBED8, TTC1, CCNJL, ADAM19, CLINT1) 0.358577706132233 24 0.120746943130509 0.699530429651152 1296 0.191218588545028 3 2 1 -6.94027741913381 LTS-023 chr5 159835659 159990183 154525 * c(MIR3142, SLU7, ATP10B, MIR146A, PTTG1) 0.286 1 NA 0.684507207129064 77 0.152649031870378 3 3 0 -5.79459334784696 LTS-023 chr5 159990184 160212699 222516 * ATP10B 0.0814841607085742 4 0.202 0.734547816386646 215 0.308358072101733 3 3 0 -6.75979393123091 LTS-023 chr5 160715414 167655046 6939633 * c(NUDCD2, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, HMMR, TENM2, CCNG1) 0.238759564656099 15 0.207419818128309 0.825879251240885 919 0.278546184892661 3 2 1 -7.37143747079074 LTS-023 chr5 167655047 167674149 19103 * TENM2 NA 0 NA 0.827923555996763 22 0.189160969267902 3 NA NA -5.76780010272734 LTS-023 chr5 167674150 167674472 323 * TENM2 0.406 1 NA 0.586665249337555 7 0.540661543631415 2 2 0 -5.76442071904467 LTS-023 chr5 167674473 175305851 7631379 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, WWC1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, PANK3, CPEB4, STC2, FGF18, NA NA NA NA NA NA NA NA NA LTS-023 ATP6V0E1, BOD1, UBTD2, SFXN1) 0.3001795746266 119 0.148875031832949 0.757338689167123 4325 0.280747808146518 3 2 1 -6.78756796718828 LTS-023 NA NA NA NA LTS-023 chr5 175305852 175305915 64 * CPLX2 NA 0 NA 0.642 1 NA NA NA NA NA LTS-023 chr5 175305916 175386614 80699 * c(CPLX2, THOC3) 0.373270537391495 5 0.213230626318078 0.638678300243867 113 0.365531920008198 3 2 1 -6.75611846102835 LTS-023 chr5 175386615 175394264 7650 * THOC3 NA 0 NA 0.307765229341953 77 0.225772687055134 1 NA NA -5.76485402763024 LTS-023 chr5 175394265 175395032 768 * THOC3 NA 0 NA 1.107 1 NA NA NA NA NA LTS-023 chr5 175395033 175801978 406946 * c(LOC100507387, FAM153B, ARL10, SIMC1, KIAA1191, LOC643201, THOC3) 0.353134221374999 7 0.159908753743532 0.605028725284025 319 0.273199287035495 2 1 1 -6.85720854447815 LTS-023 chr5 175801979 175803570 1592 * character(0) 0 1 NA 0.58114326466801 21 0.295799071121244 2 2 0 -5.76455971118676 LTS-023 chr5 175803571 175992252 188682 * c(CLTB, HIGD2A, RNF44, FAF2, NOP16, CDHR2) 0.136232945587178 11 0.237407857723983 0.597465559043821 442 0.260418472846262 2 2 0 -6.8355454011997 LTS-023 chr5 175992253 175992266 14 * CDHR2 0.487 1 NA 1.092 1 NA NA NA NA NA LTS-023 chr5 175992267 176023326 31060 * c(GPRIN1, CDHR2) 0.431427935481501 12 0.0371176467057072 0.651396871133337 172 0.362278677353884 2 1 1 -7.22422100184634 LTS-023 chr5 176023327 176047393 24067 * c(GPRIN1, SNCB) 0 1 NA 0.62490147015523 85 0.271899968733354 3 3 0 -5.77062143605604 LTS-023 chr5 176047394 176765652 718259 * c(MIR4281, LMAN2, FGFR4, ZNF346, EIF4E1B, TSPAN17, PRELID1, HK3, UIMC1, RAB24, NSD1, SNCB, MXD3, UNC5A) 0.279656145723962 38 0.220050782965946 0.616615207533719 1192 0.339627975183805 3 2 1 -6.91277126395523 LTS-023 chr5 176765653 176778081 12429 * LMAN2 NA 0 NA 1.01 1 NA NA NA NA NA LTS-023 chr5 176778082 177613836 835755 * c(RGS14, LMAN2, B4GALT7, DBN1, LOC202181, F12, N4BP3, FAM153A, GRK6, PRR7-AS1, PFN3, DDX41, FAM193B, TMED9, NHP2, PROP1, GMCL1P1, RMND5B, FAM153C, SLC34A1, LOC728554, DOK3, PRR7, PDLIM7) 0.255965017845982 36 0.11517707554092 0.95971039815531 1480 0.358130928765453 4 3 1 -6.73804490260213 LTS-023 chr5 177613837 177613838 2 * GMCL1P1 0 1 NA 4.061 1 NA NA NA NA NA LTS-023 chr5 177613839 177639069 25231 * c(HNRNPAB, GMCL1P1, PHYKPL) 0.162741867395631 5 0.100135907645559 0.933919587705537 74 0.222255434480776 6 5 1 -6.80947059853901 LTS-023 chr5 177639070 177639933 864 * PHYKPL NA 0 NA 1.579 1 NA NA NA NA NA LTS-023 chr5 177639934 177715398 75465 * c(PHYKPL, COL23A1) 0.0872807223869413 7 0.124388408585672 1.58775014516001 203 0.553714627448509 11 10 1 -6.77534402017279 LTS-023 chr5 177715399 177715409 11 * COL23A1 NA 0 NA 0.626 1 NA NA NA NA NA LTS-023 chr5 177715410 177987733 272324 * COL23A1 0 2 0 0.951034714223724 16 0.485957062575148 0 0 0 -Inf LTS-023 chr5 177987734 178293214 305481 * c(ZNF354B, CLK4, ZNF354A, AACSP1, COL23A1) 0.241 1 NA 0.999535872867273 193 0.24901554897488 4 4 0 -5.76594736095838 LTS-023 chr5 178293215 179527895 1234681 * c(MIR1229, MGAT4B, ZNF354B, TBC1D9B, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPH1, ZNF879, LTC4S, MIR340, C5orf45, RNF130, CBY3, ZFP2, RUFY1, CANX, SQSTM1, ADAMTS2, MAML1) 0.262881411399332 76 0.111878382434411 0.932457792806556 1917 0.377029753217665 4 3 1 -6.7445893349225 LTS-023 chr5 179527896 179528071 176 * RASGEF1C 0 1 NA 1.74992366091295 5 1.51915914242057 7 7 0 -5.76441024161931 LTS-023 chr5 179528072 180029174 501103 * c(FLT4, RASGEF1C, MAPK9, CNOT6, SCGB3A1, GFPT2) 0.149260388464267 17 0.145539463013018 0.974874409380468 542 0.404241711740728 5 4 1 -6.93683468283989 LTS-023 chr5 180029175 180029471 297 * FLT4 0.298 1 NA 0.967660117645325 5 0.687249226991199 4 4 0 -5.76441016932239 LTS-023 chr5 180029472 180374817 345346 * c(HEIH, OR2Y1, FLT4, MGAT1, ZFP62, LINC00847, BTNL8) 0.294563353576561 14 0.0277290659579637 0.974643658828236 391 0.247020937526818 4 3 1 -7.34394089658661 LTS-023 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.616 1 NA NA NA NA NA LTS-023 chr5 180375294 180431478 56185 * c(BTNL3, BTNL8) 0.197013661075048 4 0.139336523089485 1.65659756083473 73 0.779944298541893 6 5 1 -6.74198510916932 LTS-023 chr5 180431479 180431754 276 * BTNL3 NA 0 NA 0.733 1 NA NA NA NA NA LTS-023 chr5 180431755 180684154 252400 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.313542267736853 39 0.0908229580920991 0.895600378448802 535 0.337479352318961 3 2 1 -6.82856953235528 LTS-023 chr5 180684155 180688111 3957 * TRIM52 NA 0 NA 0.933181232586142 31 0.309685751232001 4 NA NA -5.76446223969501 LTS-023 chr6 203389 335251 131863 * DUSP22 0.212 1 NA 1.1368564180078 33 0.192086041524325 5 5 0 -5.77209293842391 LTS-023 chr6 335252 408246 72995 * c(IRF4, DUSP22) 0.35768876371398 9 0.11553246297037 1.15567636036046 153 0.349638189200055 5 3 2 -6.75778195466715 LTS-023 chr6 408247 410417 2171 * IRF4 0.141 1 NA 1.37060536284565 47 0.361022578930581 6 6 0 -5.76443253072006 LTS-023 chr6 410418 5261219 4850802 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.175689062894204 69 0.0771048073818885 1.29517331774606 2247 0.458672285203299 6 5 1 -6.88186576375216 LTS-023 chr6 5261220 5368721 107502 * FARS2 NA 0 NA 1.436 1 NA NA NA NA NA LTS-023 chr6 5368722 8435594 3066873 * c(SCARNA27, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, FARS2, SNRNP48, DSP, PIP5K1P1, F13A1, LY86-AS1, CAGE1, SLC35B3, NRN1, RREB1, BLOC1S5, BMP6, SSR1, TXNDC5, RIOK1, LY86, EEF1E1) 0.153091583335856 37 0.0938433619206845 1.37768179417753 1658 0.51387459187276 6 5 1 -6.79831574758695 LTS-023 chr6 9616275 11190790 1574516 * c(TFAP2A-AS1, ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, C6orf52, ERVFRD-1, MAK, NEDD9, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, TMEM14B, GCM2) 0.164003723577241 35 0.0928142628853884 1.55151270813055 1301 0.540552666669169 7 6 1 -6.75385800165842 LTS-023 chr6 11190791 11190859 69 * NEDD9 0.252 1 NA 1.215 1 NA NA NA NA NA LTS-023 chr6 11190860 18406363 7215504 * c(TMEM170B, LOC100130357, RANBP9, MIR4639, CAP2, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, MYLIP, HIVEP1, JARID2, NHLRC1, STMND1, NEDD9, TBC1D7, NOL7, FAM8A1, GFOD1, ATXN1, MCUR1, KIF13A, TPMT, DEK, DTNBP1, ADTRP, CD83, NUP153) 0.208709470933541 89 0.0838404627070094 1.41214673376224 3386 0.448536205678603 6 5 1 -6.80406845960381 LTS-023 chr6 18406364 24467060 6060697 * c(NRSN1, MBOAT1, HDGFL1, E2F3, RNF144B, GPLD1, ID4, KAAG1, CASC15, DCDC2, CDKAL1, PRL, MRS2, SOX4, MIR548A1, NBAT1) 0.162492595140995 34 0.10699271552994 1.71922084064227 1021 0.909458092756804 7 6 1 -6.73923448623526 LTS-023 chr6 24467061 24467064 4 * GPLD1 NA 0 NA 1.16 1 NA NA NA NA NA LTS-023 chr6 24467065 26466238 1999174 * c(SLC17A4, SLC17A2, BTN3A3, BTN2A2, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, HIST1H2AA, HIST1H2BA, GPLD1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2APS1, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, SLC17A1, ALDH5A1, C6orf62, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, NA NA NA NA NA NA NA NA NA LTS-023 HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, CMAHP, HIST1H3F, FAM65B, KIAA0319) 0.147305149321675 22 0.11129478037414 1.50877484037133 2494 0.472574647638265 7 6 1 -6.78991484232422 LTS-023 NA NA NA NA LTS-023 chr6 26466239 27371729 905491 * c(LINC00240, LOC100270746, MIR3143, PRSS16, HMGN4, BTN2A1, LOC285819, ABT1, ZNF391, GUSBP2, VN1R10P, HCG11, BTN1A1, ZNF204P, ZNF322, HIST1H4I, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2) 0.169854818682062 17 0.0914142156534169 1.77172957991283 670 1.09192004141227 7 6 1 -6.74797363482631 LTS-023 chr6 27371730 27418549 46820 * ZNF184 NA 0 NA 1.341 1 NA NA NA NA NA LTS-023 chr6 27418550 29856221 2437672 * c(ZSCAN16-AS1, LOC100131289, LINC01012, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, OR2B2, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, PGBD1, ZSCAN12) 0.195127173253102 116 0.0793403160891198 1.54443719450036 2528 0.612961041684312 6 5 1 -6.77192301590327 LTS-023 chr6 29856222 29856285 64 * character(0) 0.183 1 NA 0.613 1 NA NA NA NA NA LTS-023 chr6 29856286 29910429 54144 * character(0) 0.171614634855805 8 0.119871285135348 1.08930495965804 41 0.914848141470058 6 5 1 -6.73974671378501 LTS-023 chr6 29910430 29910457 28 * character(0) 0.483 1 NA 0.890267486802614 5 1.46353431801239 4 4 0 -5.76441020001162 LTS-023 chr6 29910458 29911241 784 * character(0) 0.279298184005751 15 0.125858310356187 0.795224359852235 31 0.687323804988032 11 8 3 -6.73448726459044 LTS-023 chr6 29911242 29912099 858 * character(0) NA 0 NA 3.627 1 NA NA NA NA NA LTS-023 chr6 29912100 29913541 1442 * character(0) 0.313545268883081 20 0.118120934906383 2.29111361151517 47 0.86949624266221 16 11 5 -6.73330386825683 LTS-023 chr6 29913542 30070937 157396 * character(0) 0.257537007187508 24 0.0574694468290811 1.3799015209378 198 0.455326973444064 8 6 2 -6.77891390147943 LTS-023 chr6 30070938 30071535 598 * character(0) 0 1 NA 1.52869127693191 13 1.26490626489648 6 6 0 -5.76441098996588 LTS-023 chr6 30071536 30310897 239362 * character(0) 0.018015325600922 9 0.0873333333333333 1.55442089983383 464 0.829780013439478 7 7 0 -6.73405112146203 LTS-023 chr6 30310898 30457732 146835 * character(0) 0.236 1 NA 1.4331762475655 49 0.291375870585029 6 6 0 -5.76441774940522 LTS-023 chr6 30457733 31170914 713182 * character(0) 0.222632464504196 95 0.0741099981467275 1.40641599231519 2406 0.493648005989032 5 4 1 -6.77968632090218 LTS-023 chr6 31170915 31236567 65653 * character(0) 0.348 1 NA 1.07071334677947 18 0.374039969378689 4 4 0 -5.76677146301233 LTS-023 chr6 31236568 31238212 1645 * character(0) 0.319172981276137 12 0.0643293490680199 2.29302805077517 42 25.6115525144917 19 13 6 -6.73447024015364 LTS-023 chr6 31238213 31238230 18 * character(0) 0.388 1 NA 0.3 1 NA NA NA NA NA LTS-023 chr6 31238231 31382980 144750 * character(0) 0.332106865177698 36 0.0801039156445383 0.998170631585628 158 0.502944791398011 3 2 1 -6.76819267726968 LTS-023 chr6 31382981 31431060 48080 * character(0) NA 0 NA 1.443 1 NA NA NA NA NA LTS-023 chr6 31431061 31465905 34845 * character(0) 0.267665966735376 4 0.0534758512477049 1.28924341997119 20 0.386154492535388 4 3 1 -6.74517779378491 LTS-023 chr6 31465906 31466490 585 * character(0) 0 1 NA 1.18074521148715 4 0.35695786399331 5 5 0 -5.76441146772812 LTS-023 chr6 31466491 31965547 499057 * character(0) 0.186672030365701 57 0.106622445407436 1.41725519236923 2903 0.420354195070731 6 5 1 -6.73500600222183 LTS-023 chr6 31965548 31973464 7917 * character(0) NA 0 NA 0.076 1 NA NA NA NA NA LTS-023 chr6 31973465 31977599 4135 * character(0) NA 0 NA 0.0391232399923287 57 0.0331410840745152 0 NA NA -6.0646183951381 LTS-023 chr6 31977600 31978735 1136 * character(0) NA 0 NA 0.724 1 NA NA NA NA NA LTS-023 chr6 31978736 31997741 19006 * character(0) NA 0 NA 1.17635285439466 55 0.583417894015292 5 NA NA -5.76443233782128 LTS-023 chr6 31997742 32005968 8227 * character(0) NA 0 NA 2.236 1 NA NA NA NA NA LTS-023 chr6 32005969 32008000 2032 * character(0) 0.156530377122582 2 0.0254558441227157 2.69165828304497 40 0.73031369972088 7 6 1 -6.7336257165829 LTS-023 chr6 32008001 32298284 290284 * character(0) 0.198707247656391 40 0.0932093177910713 1.49541747468646 1224 0.459301644323537 6 5 1 -6.75571912933236 LTS-023 chr6 32298285 32303154 4870 * character(0) 0.298 1 NA 1.58020478327033 17 0.6633938199095 7 7 0 -5.76442915572006 LTS-023 chr6 32303155 32410443 107289 * character(0) 0.26906227471811 21 0.0440676968397703 1.36362052006507 195 0.357903889517342 4 3 1 -6.79323499920281 LTS-023 chr6 32410444 32629249 218806 * c(HLA-DQA1, HLA-DRB5) 0.283396980208574 85 0.102962010616791 1.75472688213864 343 1.27510157572028 7 5 2 -6.73801418619296 LTS-023 chr6 32629250 32629257 8 * character(0) 0.261 1 NA 0.814 1 NA NA NA NA NA LTS-023 chr6 32629258 32973303 344046 * character(0) 0.277509391324899 69 0.0778604342996269 1.33576830737914 804 0.572637350731842 7 5 2 -6.78618429502441 LTS-023 chr6 32973304 32973794 491 * character(0) 0.219 1 NA 1.71852209861395 10 0.71052160026592 7 7 0 -5.76441067216082 LTS-023 chr6 32973795 37665718 4691924 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, NA NA NA NA NA NA NA NA NA LTS-023 PPARD, UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.209041603108967 258 0.0959045086560733 1.34978604442659 7299 0.895390860473898 5 4 1 -6.77912931001896 LTS-023 NA NA NA NA LTS-023 chr6 37665719 37787269 121551 * MDGA1 NA 0 NA 0.637 1 NA NA NA NA NA LTS-023 chr6 37787270 38643900 856631 * c(BTBD9, GLO1, ZFAND3) 0.131127482507649 9 0.225726850664938 0.74063386260989 321 0.368669552922853 3 3 0 -6.8315293442363 LTS-023 chr6 38643901 38650628 6728 * GLO1 0.469 1 NA 0.692436819081917 33 0.101228954041636 3 3 0 -5.76667229313886 LTS-023 chr6 38650629 39902183 1251555 * c(LOC100131047, DNAH8, KIF6, DAAM2, GLO1, GLP1R, MOCS1, SAYSD1, KCNK16, KCNK5, KCNK17) 0.327743239360185 45 0.201292259506852 0.731829815413091 1361 0.316533171816243 3 2 1 -6.7385439017894 LTS-023 chr6 39902184 39902237 54 * MOCS1 NA 0 NA 0.62 1 NA NA NA NA NA LTS-023 chr6 39902238 40359342 457105 * c(LINC00951, MOCS1, TDRG1) NA 0 NA 0.988 1 NA NA NA NA NA LTS-023 chr6 40359343 40399618 40276 * LRFN2 0 1 NA 1.27834062454229 29 0.711385522813731 5 5 0 -5.764567455739 LTS-023 chr6 40399619 41309729 910111 * c(APOBEC2, TREML5P, ADCY10P1, OARD1, TSPO2, UNC5CL, TREML4, TREML1, TREML3P, NFYA, TREM2, TREM1, LRFN2, TREML2, NCR2) 0.0960073613299499 15 0.183123169582921 1.09417087259689 595 0.796003085378217 4 4 0 -6.8208878047371 LTS-023 chr6 41309730 41318438 8709 * NCR2 0.354 1 NA 1.1729505585729 11 0.284103246277572 5 5 0 -5.76446323250353 LTS-023 chr6 41318439 42689755 1371317 * c(TOMM6, MIR4641, FRS3, FOXP4, TAF8, UBR2, USP49, GUCA1A, GUCA1B, PRICKLE4, MDFI, PGC, MRPS10, TRERF1, PRPH2, C6orf132, BYSL, TFEB, CCND3, NCR2, MED20) 0.264783064869539 73 0.135676802825545 1.03825632167812 1824 0.412306455524654 4 3 1 -6.7508802986607 LTS-023 chr6 42689756 42713881 24126 * c(ATP6V0CP3, PRPH2, TBCC) NA 0 NA 1.00149776501292 45 0.153793834188317 4 NA NA -5.76478555719349 LTS-023 chr6 42713882 42789702 75821 * c(GLTSCR1L, TBCC) NA 0 NA 1.682 1 NA NA NA NA NA LTS-023 chr6 42789703 42833311 43609 * GLTSCR1L 0 1 NA 1.72876499292404 91 0.321966080543832 7 7 0 -5.76474313278111 LTS-023 chr6 42833312 44320619 1487308 * c(LINC01512, MIR4647, DNPH1, CNPY3, SLC22A7, CAPN11, KLHDC3, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, GLTSCR1L, ZNF318, YIPF3, GNMT, RPL7L1, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, NFKBIE, MRPL2, PEX6, POLH, GTPBP2, MRPS18A, PPP2R5D, TMEM63B, AARS2, XPO5, PTK7, MRPL14, DLK2, SRF, VEGFA, TTBK1, RRP36, ABCC10, KLC4, TJAP1, POLR1C, MAD2L1BP, CUL7) 0.141675116453563 84 0.0865447131723467 1.72836946918292 3948 0.596248452046289 7 6 1 -6.75327204865015 LTS-023 chr6 44320620 44328112 7493 * SPATS1 NA 0 NA 1.176 1 NA NA NA NA NA LTS-023 chr6 44328113 50686922 6358810 * c(ANKRD66, MIR4642, RCAN2, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, CYP39A1, PGK2, CLIC5, CENPQ, ENPP5, RHAG, MIR586, CRISP2, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.143492894945097 76 0.0617735763643494 1.34603299952325 2732 0.434305861718968 6 5 1 -7.03272566700631 LTS-023 chr6 50686923 50696539 9617 * TFAP2D NA 0 NA 0.878 1 NA NA NA NA NA LTS-023 chr6 50696540 52055300 1358761 * c(IL17A, MIR206, MIR133B, PKHD1, TFAP2B, TFAP2D) 0.154474511637965 7 0.114610728326885 0.931093550140829 663 0.330694142268851 4 3 1 -7.26282087575773 LTS-023 chr6 52055301 52055335 35 * IL17A 0.209 1 NA 3.412 1 NA NA NA NA NA LTS-023 chr6 52055336 52271627 216292 * c(IL17F, IL17A, MCM3, PAQR8) 0.16526954514791 4 0.18671792451003 1.09092685994296 204 0.300567419017543 5 4 1 -6.79043110078645 LTS-023 chr6 52271628 52357071 85444 * c(EFHC1, PAQR8) 0.382 1 NA 1.02322550046087 87 0.21411716383865 4 4 0 -5.76679924622504 LTS-023 chr6 52357072 52522264 165193 * c(EFHC1, TRAM2-AS1, TRAM2) 0.402550227062311 11 0.0364232692856441 1.0106124541187 192 0.322330770524909 4 2 2 -6.74948088697838 LTS-023 chr6 52522265 52522270 6 * character(0) NA 0 NA 1.513 1 NA NA NA NA NA LTS-023 chr6 52522271 52770750 248480 * c(GSTA5, TMEM14A, GSTA1, GSTA2, GSTA3, LOC730101, GSTA7P) 0.188634522741136 5 0.177662601579511 1.41084023543926 158 0.62733053354909 6 5 1 -6.73424280579864 LTS-023 chr6 52770751 52842732 71982 * GSTA3 NA 0 NA 0.837 1 NA NA NA NA NA LTS-023 chr6 52842733 53409942 567210 * c(MIR5685, ICK, FBXO9, GCLC, GSTA4, ELOVL5, RPS16P5, GCM1) 0.393324040993609 5 0.0426110314355332 1.06222443664 626 0.245379923459644 4 2 2 -6.77610714336042 LTS-023 chr6 53409943 53516308 106366 * KLHL31 NA 0 NA 1.135 1 NA NA NA NA NA LTS-023 chr6 53516309 54791335 1275027 * c(MLIP-IT1, FAM83B, TINAG, KLHL31, LRRC1, MLIP) 0.291730932208242 15 0.153627967443927 1.21319279923095 457 0.373081113906154 5 4 1 -6.87817947835952 LTS-023 chr6 54791336 54792306 971 * FAM83B NA 0 NA 2.118 1 NA NA NA NA NA LTS-023 chr6 54792307 57512678 2720372 * c(BEND6, FAM83B, ZNF451, HCRTR2, GFRAL, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.303767649028833 86 0.0537943950212707 1.41702708727535 2128 0.388723429281077 6 4 2 -6.93418872606042 LTS-023 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.21435934050537 19 0.308243742318255 5 NA NA -5.76462602955886 LTS-023 chr6 62390154 62887099 496946 * KHDRBS2 0.371 1 NA 0.718236826306819 63 0.193906814048816 3 3 0 -5.77658114099393 LTS-023 chr6 62887100 66204945 3317846 * c(KHDRBS2, PHF3, EYS, LOC441155, LGSN, PTP4A1) 0.37844109485768 18 0.148364504325633 0.754749547974928 809 0.321699240025422 3 2 1 -6.77425977359671 LTS-023 chr6 66204946 66802112 597167 * c(EYS, SLC25A51P1) 0 1 NA 0.781489512065889 29 1.19767957506673 3 3 0 -5.76492009497006 LTS-023 chr6 66802113 70962039 4159927 * c(COL9A1, COL19A1, LMBRD1, ADGRB3) 0.304713795727592 30 0.181499631106936 0.757248757043992 696 0.380545685087024 3 2 1 -6.75937433427028 LTS-023 chr6 70962040 70963156 1117 * COL9A1 0.418 1 NA 0.712552489755054 7 0.144938739111523 3 3 0 -5.76448103169193 LTS-023 chr6 70963157 71875599 912443 * c(COL9A1, B3GAT2, SDHAF4, FAM135A, SMAP1) 0.413066196266604 17 0.116516598161201 0.747308068949699 541 0.203888931895774 3 2 1 -6.95769166894929 LTS-023 chr6 71875600 72809645 934046 * c(RIMS1, MIR30A, MIR30C2, OGFRL1, LINC00472) 0 1 NA 0.67895524438695 101 0.172327932836333 3 3 0 -5.93163268937375 LTS-023 chr6 72809646 73951866 1142221 * c(KHDC1L, MIR4282, KCNQ5-AS1, RIMS1, KCNQ5, KHDC1) 0.235390456599258 10 0.21971203375732 0.749446770085439 507 0.264180707655371 3 2 1 -6.86718840095678 LTS-023 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.664 1 NA NA NA NA NA LTS-023 chr6 73952151 74118902 166752 * c(KHDC3L, DPPA5, NA, OOEP, DDX43, KHDC1) 0.174442626792335 7 0.217434062254679 0.629103609805832 155 0.297795523148079 2 2 0 -6.94912705740349 LTS-023 chr6 74118903 74123363 4461 * DDX43 0.468 1 NA 0.759452012851573 15 0.303391229430315 3 3 0 -5.76441812790449 LTS-023 chr6 74123364 74492461 369098 * c(MB21D1, CD109, EEF1A1, MTO1, SLC17A5, DDX43) 0.350082614166233 13 0.156411767542091 0.656439859932238 541 0.173613670346304 3 2 1 -6.85549810444005 LTS-023 chr6 74492462 74534015 41554 * CD109 0.150562197867115 3 0.249992666559108 0.750213228240487 87 0.331352554898148 5 4 1 -6.82389945476358 LTS-023 chr6 74534016 74534223 208 * CD109 0.387 1 NA 0.9178450587873 5 0.191308128421142 4 4 0 -5.76442337144826 LTS-023 chr6 74534224 76744548 2210325 * c(LOC100506804, COL12A1, COX7A2, CD109, SENP6, FILIP1, IMPG1, MYO6, TMEM30A) 0.411920121158892 31 0.0906067243344756 0.737634482064553 1207 0.213883541400472 3 2 1 -7.08980410763152 LTS-023 chr6 76744549 76751736 7188 * IMPG1 0 1 NA 0.830663463082883 7 1.18713448510027 3 3 0 -5.76444465056984 LTS-023 chr6 76751737 79424509 2672773 * c(HTR1B, IMPG1) NA 0 NA 0.755826986580977 49 0.0842150329140082 3 NA NA -5.79571370547334 LTS-023 chr6 79424510 79577189 152680 * character(0) NA 0 NA 1.276 1 NA NA NA NA NA LTS-023 chr6 79577190 83875121 4297932 * c(HMGN3-AS1, IRAK1BP1, LCA5, DOPEY1, IBTK, PGM3, PHIP, FAM46A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.330541965488089 44 0.0689433385639738 1.23700224521818 1660 0.330658650069611 5 3 2 -7.05109210110443 LTS-023 chr6 83875122 83875256 135 * c(DOPEY1, PGM3) NA 0 NA 0.987 1 NA NA NA NA NA LTS-023 chr6 83875257 88051849 4176593 * c(SYNCRIP, CGA, MRAP2, RWDD2A, RIPPLY2, PRSS35, CEP162, DOPEY1, ZNF292, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, PGM3, SMIM8, SNX14, SNORD50B, TBX18, SNAP91) 0.299620872021675 42 0.132372586822802 1.16729312240032 1804 0.342401721892654 5 3 2 -6.97486095363521 LTS-023 chr6 88051850 88060192 8343 * c(C6orf163, SMIM8) 0 1 NA 1.13450507877718 15 0.608247466868857 5 5 0 -5.76446208289989 LTS-023 chr6 88060193 88173735 113543 * c(SLC35A1, CFAP206, C6orf163, SMIM8, LINC01590) 0.196808418788489 9 0.181770994508047 1.14104840375063 119 0.616534273072689 5 4 1 -6.73978849202409 LTS-023 chr6 88173736 88173849 114 * c(SLC35A1, CFAP206) 0.319 1 NA 1.45536222845784 3 0.614810811008829 6 6 0 -5.76441016336716 LTS-023 chr6 88173850 90326360 2152511 * c(SLC35A1, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, ANKRD6, ORC3, GABRR1, GABRR2, UBE2J1, AKIRIN2, RARS2, LYRM2, RRAGD, SPACA1, RNGTT) 0.298996777751205 46 0.109860053709099 1.13904414119693 1337 0.302704752221531 5 3 2 -7.0960853162139 LTS-023 chr6 90326361 90337247 10887 * c(ANKRD6, LYRM2) 0 1 NA 1.12272449745495 49 0.59691446204628 5 5 0 -5.76450623427144 LTS-023 chr6 90337248 90659867 322620 * c(ANKRD6, MDN1, LYRM2, BACH2, GJA10, CASP8AP2) 0.145110574924461 9 0.180445590445184 1.13823956544002 1073 0.448016763120844 6 5 1 -6.80873368744884 LTS-023 chr6 90659868 90660319 452 * BACH2 0.381 1 NA 1.03807199716559 9 0.290211321473011 4 4 0 -5.76442194809894 LTS-023 chr6 90660320 93950963 3290644 * c(MIR4464, MIR4643, EPHA7, BACH2, MAP3K7) 0.301462527723439 2 0.0282842712474619 1.11960891468615 226 0.273514344409643 4 3 1 -8.04377437390882 LTS-023 chr6 93950964 102517969 8567006 * c(TSTD3, MIR2113, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, PRDM13, TSG1, SIM1, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.269361104407494 53 0.131175529705864 1.23711298068415 2371 0.42590563790274 5 4 1 -6.85042785054154 LTS-023 chr6 105175931 106556431 1380501 * c(LIN28B-AS1, BVES, BVES-AS1, LIN28B, PREP, HACE1, PRDM1, POPDC3) 0.340610127717014 26 0.149149609968803 1.82608875961224 729 0.580687382940391 8 5 3 -6.75313257358982 LTS-023 chr6 106556432 106556529 98 * PRDM1 0.459 1 NA 0.938 1 NA NA NA NA NA LTS-023 chr6 106556530 107780642 1224113 * c(LOC100422737, AIM1, C6orf203, QRSL1, PDSS2, BEND3, PRDM1, RTN4IP1, ATG5) 0.365933227853149 21 0.13113936607035 1.840857556305 802 0.573084966267675 8 5 3 -6.73506667762101 LTS-023 chr6 107780643 108026137 245495 * c(SCML4, SOBP, PDSS2) 0.443502302862372 4 0.0362709709455555 1.57991615228983 96 0.376605755050082 6 3 3 -7.6041582936957 LTS-023 chr6 108026138 108042216 16079 * SCML4 0.471 1 NA 1.56557113750826 21 0.498237928437141 7 7 0 -5.7645635536272 LTS-023 chr6 108042217 108533455 491239 * c(SEC63, SCML4, OSTM1, NR2E1, SNX3) 0.261361754575784 9 0.233836184349452 1.45718047377348 452 0.403300301530129 7 5 2 -6.77634993137248 LTS-023 chr6 108533456 108616117 82662 * c(LACE1, SNX3) 0.479 1 NA 1.44070398520984 33 0.277898550134157 6 6 0 -5.76441424487294 LTS-023 chr6 108616118 109764535 1148418 * c(LOC100996634, CCDC162P, FOXO3, LACE1, SESN1, CEP57L1, PPIL6, LINC00222, SMPD2, ARMC2, CD164) 0.469004967209633 34 0.0287441383623875 1.43484886865774 886 0.400130051105904 6 3 3 -9.18574770790847 LTS-023 chr6 109764536 109767098 2563 * c(MICAL1, SMPD2) 0 1 NA 1.6071311493318 39 0.395083521807451 7 7 0 -5.76442335080584 LTS-023 chr6 109767099 110551345 784247 * c(AK9, GPR6, CDC40, MICAL1, WASF1, ZBTB24, FIG4) 0.395837225271903 17 0.157531346087057 1.57365152943197 789 0.460779125746121 7 4 3 -6.7408812632292 LTS-023 chr6 110551346 110797226 245881 * c(CDC40, METTL24, DDO, SLC22A16) NA 0 NA 1.51260576814651 231 0.43833950953161 6 NA NA -5.76642472482075 LTS-023 chr6 110797227 110797646 420 * SLC22A16 NA 0 NA 0.772 1 NA NA NA NA NA LTS-023 chr6 110797647 111215549 417903 * c(CDK19, AMD1, SLC22A16) 0 1 NA 0.816694470050075 232 0.262382240911183 3 3 0 -5.79328204317243 LTS-023 chr6 111215550 121624921 10409372 * c(TRAPPC3L, LOC100287632, TRAF3IP2, GTF3C6, NUS1, SLC16A10, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, BRD7P3, FRK, VGLL2, FYN, FAM26E, MCM9, ASF1A, AMD1, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, RWDD1, PLN, GOPC, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, MIR548B, TSPYL1, NA NA NA NA NA NA NA NA NA LTS-023 TPI1P3, FAM184A, RPF2, WISP3, MFSD4B) 0.0357283158791618 119 0.0228036271749567 0.843575874223952 4763 0.30772593888046 3 3 0 -7.59051986053595 LTS-023 NA NA NA NA LTS-023 chr6 121624922 121625458 537 * TBC1D32 NA 0 NA 1.15 1 NA NA NA NA NA LTS-023 chr6 121625459 127768916 6143458 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, SOGA3, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.0392422938566182 57 0.0213658312936138 0.964776805693138 2108 0.320253651031662 4 4 0 -6.84753043580865 LTS-023 chr6 127768917 127770959 2043 * c(SOGA3, KIAA0408) NA 0 NA 0.884 1 NA NA NA NA NA LTS-023 chr6 127770960 137814129 10043170 * c(LINC00271, NHEG1, MIR3662, SMLR1, LINC01013, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, TAAR1, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, EPB41L2, EYA4, TMEM244, MOXD1, PDE7B, LINC00326, TAAR6, SLC35D3, IFNGR1, C6orf58, ARG1, HMGA1P7, SOGA3, THEMIS, LAMA2, MAP3K5, MYB, ENPP1, ENPP3, PEX7, IL20RA, AHI1, VNN3, PTPRK, SNORA33, RPS12, CTAGE9, SGK1, ALDH8A1, TCF21, OR2A4, TAAR8, STX7, L3MBTL3, NA NA NA NA NA NA NA NA NA LTS-023 VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1) 0.0409250570158389 142 0.0384415877503045 0.871728940225108 5300 0.436410902840137 4 4 0 -7.16595303248724 LTS-023 NA NA NA NA LTS-023 chr6 137814130 137815552 1423 * OLIG3 NA 0 NA 0.872969396347989 27 0.107057949533907 4 NA NA -5.76535351785905 LTS-023 chr6 137815553 138192305 376753 * c(LOC100130476, TNFAIP3) NA 0 NA 0.452 1 NA NA NA NA NA LTS-023 chr6 138192306 138197164 4859 * TNFAIP3 0.091 1 NA 0.396798039826739 15 0.148488030622321 2 2 0 -5.77364306611476 LTS-023 chr6 138197165 139144040 946876 * c(MIR3145, GVQW2, HEBP2, CCDC28A, ECT2L, FLJ46906, ARFGEF3, NHSL1, PBOV1, PERP, TNFAIP3) 0.0706113890896598 20 0.0434869611432402 0.42717165791316 885 0.151483156340588 2 2 0 -7.58734469577117 LTS-023 chr6 139144041 139145121 1081 * ECT2L NA 0 NA 0.123454989102039 39 0.122448402750025 0 NA NA -5.79027281511251 LTS-023 chr6 139145122 139145137 16 * ECT2L NA 0 NA 0.415 1 NA NA NA NA NA LTS-023 chr6 139145138 152130314 12985177 * c(UST-AS1, LOC100132735, MIR3668, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, RAB32, KATNA1, GINM1, ADAT2, STXBP5, RAET1E, LOC153910, ZC2HC1B, RAET1L, TXLNB, ESR1, TAB2, SASH1, FUCA2, SHPRH, MTHFD1L, PHACTR2-AS1, GRM1, HIVEP2, ZC3H12D, ECT2L, NUP43, RAET1G, SUMO4, SAMD5, IYD, NMBR, PCMT1, AIG1, VTA1, HECA, PLAGL1, RMND1, HYMAI, ADGRG6, PLEKHG1, ZBTB2, ABRACL, LINC01625, RPS18P9, RAET1K, NA NA NA NA NA NA NA NA NA LTS-023 KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, EPM2A, ARMT1, ADGB, CCDC170, ULBP2, ULBP1, PPP1R14C, SF3B5, FBXO30, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, AKAP12, PHACTR2) 0.0791251751993824 159 0.0521692656120482 0.438507526114624 5959 0.264110305503163 2 2 0 -8.93965261394887 LTS-023 NA NA NA NA LTS-023 chr6 152130315 152130442 128 * ESR1 NA 0 NA 0.357307408457734 3 0.013856406460551 1 NA NA -5.78346705716551 LTS-023 chr6 152130443 152163762 33320 * ESR1 NA 0 NA 0.612 1 NA NA NA NA NA LTS-023 chr6 152163763 152419987 256225 * ESR1 0.403 1 NA 0.836546956768298 45 0.586018459046671 3 3 0 -5.77014785645956 LTS-023 chr6 152419988 152697706 277719 * c(ESR1, SYNE1) 0.426153754798543 24 0.0477830051347772 0.725003751325843 754 0.180762780870777 4 2 2 -7.37512630567995 LTS-023 chr6 152697707 152711545 13839 * SYNE1 0 1 NA 0.629413956986453 31 0.212134366021425 3 3 0 -5.76981460900271 LTS-023 chr6 152711546 153309669 598124 * c(SYNE1, FBXO5, MTRF1L, VIP, MYCT1) 0.252695250385039 9 0.221313565884345 0.75020751013332 523 0.227692550166935 3 2 1 -6.82596527689175 LTS-023 chr6 153309670 153319782 10113 * MTRF1L 0.433 1 NA 0.743327474938441 47 0.188713902760984 3 3 0 -5.7644141901458 LTS-023 chr6 153319783 154476324 1156542 * c(IPCEF1, RGS17, OPRM1, MTRF1L) 0.402074815254988 10 0.0249408188406966 0.737744508952259 212 0.295768492209086 4 2 2 -7.32903718166452 LTS-023 chr6 154476325 155485554 1009230 * c(CNKSR3, SCAF8, IPCEF1, TIAM2, OPRM1) 0.39343187047565 16 0.0402359706398806 0.660611436590435 462 0.156213870698767 2 1 1 -7.94850260387804 LTS-023 chr6 155485555 155486585 1031 * TIAM2 0 1 NA 0.782730575303365 9 1.14497195501802 3 3 0 -5.76441116595417 LTS-023 chr6 155486586 159464731 3978146 * c(C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, OSTCP1, TIAM2, GTF2H5, CLDN20, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, SERAC1, SYNJ2, SYTL3) 0.320860162867284 60 0.167555386744559 0.66816270239688 2179 0.225449200080494 3 2 1 -7.27450562410053 LTS-023 chr6 159464732 159652931 188200 * c(TAGAP, FNDC1) 0.401 1 NA 0.70596696665136 61 0.231075742792496 3 3 0 -5.77114080438186 LTS-023 chr6 159652932 160491117 838186 * c(LOC100129518, AIRN, PNLDC1, MRPL18, IGF2R, ACAT2, MAS1, SOD2, SNORA20, SNORA29, TCP1, FNDC1, WTAP) 0.422955984035323 53 0.0711003246712695 0.658654948265612 885 0.547034561962956 2 1 1 -6.91073643947044 LTS-023 chr6 160491118 160492845 1728 * IGF2R NA 0 NA 0.728 1 NA NA NA NA NA LTS-023 chr6 160492846 160645832 152987 * c(IGF2R, SLC22A1, SLC22A2, LOC729603) 0.384138464224917 10 0.145239878209196 0.696456041001316 226 0.259976285772777 3 2 1 -6.79357370344767 LTS-023 chr6 160645833 160664607 18775 * SLC22A2 0 1 NA 0.785761053098294 19 0.181264789676893 3 3 0 -5.76528906429705 LTS-023 chr6 160664608 161137650 473043 * c(LPA, PLG, SLC22A3, SLC22A2, LPAL2) 0.198360069944798 10 0.230412576817229 0.701523444886388 318 0.449111454226632 4 3 1 -6.93348910187232 LTS-023 chr6 161137651 161137779 129 * PLG 0.391 1 NA 0.743659638402813 5 0.0802882307688992 3 3 0 -5.76441036870005 LTS-023 chr6 161137780 163418588 2280809 * c(PACRG, MAP3K4, PARK2, PLG, AGPAT4, AGPAT4-IT1) 0.378078047907044 14 0.121873583395543 0.726976837863486 631 0.189444949182233 3 2 1 -6.81771370803024 LTS-023 chr6 163418589 163483186 64598 * PACRG NA 0 NA 0.905 1 NA NA NA NA NA LTS-023 chr6 163483187 168308018 4824832 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, LINC01558, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, AFDN, LINC00602, MPC1, UNC93A, RPS6KA2, AFDN-AS1, T, TCP10, TTLL2, RNASET2, LINC00473, QKI) 0.350906362733708 62 0.126177140596448 1.01728116921591 2118 0.413178722078093 4 2 2 -6.8386467486468 LTS-023 chr6 168308019 168311779 3761 * AFDN NA 0 NA 1.388 1 NA NA NA NA NA LTS-023 chr6 168311780 168445769 133990 * c(HGC6.3, KIF25, AFDN) 0.328684397407752 9 0.149903950729941 1.12612523319667 305 0.302787663406723 6 4 2 -6.78586941775593 LTS-023 chr6 168445770 168456481 10712 * FRMD1 0 1 NA 1.07851812150941 5 1.51696928116557 4 4 0 -5.76443742866607 LTS-023 chr6 168456482 168707675 251194 * c(DACT2, FRMD1) 0.156115232793112 10 0.190512204333476 1.21564729013725 132 0.76773455306772 6 5 1 -6.75046579226543 LTS-023 chr6 168707676 168708501 826 * DACT2 0.406 1 NA 1.07326523425205 19 0.231791409051202 4 4 0 -5.76449150274806 LTS-023 chr6 168708502 168711149 2648 * DACT2 0.395946505793249 3 0.0599193902950734 1.09059241999465 37 0.232980505441799 4 2 2 -6.73348241783311 LTS-023 chr6 168711150 170891863 2180714 * c(MIR4644, LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.341457440351304 40 0.138855521205427 0.944417954149957 1131 0.598460710893406 4 2 2 -6.8307738538709 LTS-023 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.804521297102007 21 0.204774626404366 3 NA NA -5.76454692887058 LTS-023 chr7 193047 227732 34686 * FAM20C 0.042 1 NA 0.649015607708813 31 0.161534183605571 3 3 0 -5.78012616842239 LTS-023 chr7 227733 5661213 5433481 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, FSCN1, MIR589, MAFK, MICALL2, FBXL18, NA NA NA NA NA NA NA NA NA LTS-023 TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.0403687853043325 255 0.0309253959433089 0.754890145911172 5294 0.29499940835141 3 3 0 -6.73830358386488 LTS-023 NA NA NA NA LTS-023 chr7 5661214 5661411 198 * RNF216 0.05 1 NA 1.04445782691618 5 0.548341317064472 4 4 0 -5.76441188723224 LTS-023 chr7 5661412 5938326 276915 * c(RNF216-IT1, ZNF815P, RNF216, OCM) 0.150141403242399 5 0.198188546591371 0.708428738690434 185 0.352095296345433 3 3 0 -6.9196413801175 LTS-023 chr7 5938327 5938351 25 * CCZ1 NA 0 NA 1.206 1 NA NA NA NA NA LTS-023 chr7 5938352 6018202 79851 * c(RSPH10B, CCZ1, PMS2) 0.33854692447062 4 0.224037199292141 0.989184580437009 128 0.580899112190152 3 2 1 -6.74425055811768 LTS-023 chr7 6018203 6022570 4368 * PMS2 NA 0 NA 1.05296659236558 5 0.102587523607893 4 NA NA -5.76580591611736 LTS-023 chr7 6022571 6026483 3913 * PMS2 NA 0 NA 0.603 1 NA NA NA NA NA LTS-023 chr7 6026484 6054911 28428 * c(PMS2, AIMP2) 0.027 1 NA 0.647281898333163 51 0.194712737631821 3 3 0 -5.77362560283966 LTS-023 chr7 6054912 6781431 726520 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.0358684922739786 34 0.0270567502887058 0.719977358263006 1221 0.268937749104177 3 3 0 -6.74942842222304 LTS-023 chr7 6781432 6785686 4255 * PMS2CL NA 0 NA 0.286 1 NA NA NA NA NA LTS-023 chr7 6785687 6820560 34874 * c(PMS2CL, RSPH10B2) 0.074 1 NA 0.336910996363238 60 0.36822449052681 1 1 0 -5.76839263993389 LTS-023 chr7 6820561 6820926 366 * RSPH10B2 NA 0 NA 0.028 1 NA NA NA NA NA LTS-023 chr7 6820927 6862945 42019 * c(CCZ1B, RSPH10B2) 0.426 1 NA 0.193358583605502 73 0.528815412490088 1 1 0 -5.77841305964239 LTS-023 chr7 6862946 7136007 273062 * c(LOC100131257, CCZ1B) 0.274112689693545 2 0.243951839509359 0.49088221394815 39 0.32952548593992 2 1 1 -6.88490160725519 LTS-023 chr7 7136008 7136106 99 * LOC100131257 NA 0 NA 0.582 1 NA NA NA NA NA LTS-023 chr7 7136107 7841475 705369 * c(LOC100131257, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.0416665826589657 17 0.0253432320702137 0.781342417548292 404 0.345128803398902 3 3 0 -6.74663711475262 LTS-023 chr7 7841476 7916897 75422 * UMAD1 NA 0 NA 0.485 1 NA NA NA NA NA LTS-023 chr7 7916898 16460854 8543957 * c(ISPD-AS1, ARL4A, GLCCI1, DGKB, PER4, ETV1, VWDE, THSD7A, NXPH1, ICA1, AGMO, MEOX2, NDUFA4, TMEM106B, UMAD1, ISPD, SCIN, PHF14) 0.0898482126783315 54 0.0450085208176349 0.434860191543315 1838 0.135418449389212 2 2 0 -11.0473132276117 LTS-023 chr7 16460855 16900193 439339 * c(LRRC72, AGR2, AGR3, SOSTDC1, TSPAN13, BZW2, ANKMY2, ISPD) 0.050268683574896 13 0.0303524172146014 0.530678544884579 368 0.227643895434901 2 2 0 -6.7580023323715 LTS-023 chr7 16900194 16900967 774 * AGR3 NA 0 NA 0.434 1 NA NA NA NA NA LTS-023 chr7 16900968 20824810 3923843 * c(MIR3146, MACC1-AS1, AGR3, AHR, PRPS1L1, TWISTNB, SP8, FERD3L, SNX13, TMEM196, ABCB5, MACC1, ITGB8, TWIST1, HDAC9) 0.0763984717222363 35 0.0429802182365779 0.452882994151053 1398 0.175993755558224 2 2 0 -7.96573477699566 LTS-023 chr7 20824811 24903107 4078297 * c(LOC100506178, KLHL7-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, DFNA5, SP8, RPL23P8, STEAP1B, RPS2P32, OSBPL3, TRA2A, FAM221A, IL6, NPY, MPP6, TOMM7, CDCA7L, KLHL7, STK31, SP4, SNORD93, FAM126A, DNAH11, CCDC126, RAPGEF5) 0.0721952580427837 63 0.0499748989733221 0.417846897378911 2401 0.200443113990919 2 2 0 -8.75103794452943 LTS-023 chr7 24903108 25162041 258934 * c(OSBPL3, CYCS) 0.184 1 NA 0.409666254057244 79 0.115893447352473 2 2 0 -6.33264160979863 LTS-023 chr7 25162042 26252382 1090341 * c(RNU6-16P, CBX3, C7orf31, HNRNPA2B1, MIR148A, CYCS, NPVF, NFE2L3) 0.252609029016253 9 0.150123097638053 0.414735621387107 303 0.15044633316534 2 1 1 -8.3910033035395 LTS-023 chr7 26252383 26413088 160706 * c(CBX3, SNX10) 0.056 1 NA 0.427379331712661 71 0.0949329976576406 2 2 0 -6.12857545390754 LTS-023 chr7 26413089 27497389 1084301 * c(HOXA-AS3, HOTTIP, HOTAIRM1, HOXA10-HOXA9, HOXA10-AS, EVX1, HOXA11-AS, C7orf71, SNX10, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC441204, MIR196B, SKAP2, KIAA0087) 0.0647803179373073 25 0.0516731071254671 0.411575110682815 943 0.140355678299988 2 2 0 -8.10693933946326 LTS-023 chr7 27497390 27582768 85379 * HIBADH NA 0 NA 0.400480523392107 49 0.113392371577513 2 NA NA -6.01334634844111 LTS-023 chr7 27582769 27666900 84132 * HIBADH NA 0 NA 0.675 1 NA NA NA NA NA LTS-023 chr7 27666901 27702304 35404 * HIBADH 0.454 1 NA 0.677895101976337 28 0.144673702374447 3 3 0 -5.77394846240675 LTS-023 chr7 27702305 29962934 2260630 * c(JAZF1-AS1, LOC100506497, MIR550A3, HIBADH, CHN2, JAZF1, PRR15, DPY19L2P3, CPVL, WIPF3, LOC646762, TAX1BP1, CREB5, SCRN1, TRIL) 0.437503016306921 49 0.0954285268748114 0.791736010888927 1078 0.239432916051196 3 2 1 -7.37663021134244 LTS-023 chr7 29962935 29963082 148 * SCRN1 0.459 1 NA 0.807684176522311 4 0.35462797407988 3 3 0 -5.76441441856149 LTS-023 chr7 29963083 30101716 138634 * c(FKBP14, PLEKHA8, SCRN1) 0.211282922098601 9 0.214267810098588 0.787318132053794 221 0.31683517535502 4 3 1 -6.80899989081918 LTS-023 chr7 30101717 30113706 11990 * PLEKHA8 0.488 1 NA 0.692613582232477 11 0.125968322136235 3 3 0 -5.76699607267221 LTS-023 chr7 30113707 30634661 520955 * c(MIR550B1, NOD1, DKFZP586I1420, MTURN, ZNRF2, GARS, LOC401320, MIR550A1, GGCT, PLEKHA8) 0.459251257197504 23 0.0875486538926726 0.753044244712806 420 0.219889823776642 4 2 2 -7.43355307828838 LTS-023 chr7 30634662 30673401 38740 * GARS 0.373 1 NA 0.843925592835246 83 0.173385590614152 3 3 0 -5.77590508598956 LTS-023 chr7 30673402 30796257 122856 * c(INMT-FAM188B, INMT, CRHR2, GARS) 0.295398486822014 13 0.213353955333409 0.820346478550571 161 0.384816936593806 4 3 1 -6.76027156478762 LTS-023 chr7 30796258 30796530 273 * c(INMT-FAM188B, INMT) 0.497 1 NA 0.647848364353744 3 0.225952059812106 3 3 0 -5.7644749164453 LTS-023 chr7 30796531 30876278 79748 * c(INMT-FAM188B, INMT, FAM188B) 0.420347689810996 7 0.0369039938476144 0.729132883394969 63 0.171291315593486 4 2 2 -7.10600344222964 LTS-023 chr7 30876279 30898697 22419 * c(INMT-FAM188B, AQP1, FAM188B) 0.453391389382951 2 0.0438406204335659 0.89101996355463 64 0.236407469880874 4 2 2 -7.60019306827059 LTS-023 chr7 30898698 30961113 62416 * c(INMT-FAM188B, AQP1, FAM188B) 0 1 NA 0.841093938204453 51 0.258964087146022 3 3 0 -5.77226616979537 LTS-023 chr7 30961114 31147029 185916 * c(ADCYAP1R1, GHRHR, AQP1) 0.263443494381492 11 0.222279921802136 0.878816410223085 244 0.411548579394682 4 3 1 -6.7404409553496 LTS-023 chr7 31147030 31149151 2122 * ADCYAP1R1 0.485 1 NA 0.868526404473477 45 0.181111040775843 4 4 0 -5.76494742255332 LTS-023 chr7 31149152 31747855 598704 * c(PPP1R17, ADCYAP1R1, CCDC129, NEUROD6) 0.373625827195232 9 0.207684121791832 0.893890635991433 276 0.372214932737569 4 2 2 -6.76085845551344 LTS-023 chr7 31747856 31748086 231 * PPP1R17 0 1 NA 0.956437050117759 5 0.307436660143191 4 4 0 -5.76441079508755 LTS-023 chr7 31748087 31904578 156492 * PDE1C 0.227757347097021 13 0.239667424484377 0.847760488638218 268 0.397676011859693 4 3 1 -6.7594869539622 LTS-023 chr7 31904579 32209459 304881 * PDE1C 0.422 1 NA 0.862505341627114 51 0.262243752799476 4 4 0 -5.80545168223758 LTS-023 chr7 32209460 32909635 700176 * c(DPY19L1P1, LOC100130673, MIR550B2, AVL9, LSM5, KBTBD2, LINC00997, ZNRF2P1, PDE1C, MIR550A2) 0.449862089020318 11 0.0319596336308504 0.814709184763185 351 0.225655888305047 4 2 2 -8.31432281387595 LTS-023 chr7 32909636 32956941 47306 * c(AVL9, KBTBD2, RP9P) 0.351 1 NA 1.25611125884333 40 2.1987078301666 5 5 0 -5.76441946173691 LTS-023 chr7 32956942 34725777 1768836 * c(FKBP9, BMPER, AVL9, BBS9, NPSR1, NPSR1-AS1, RP9P, NT5C3A, RP9) 0.280028864507558 9 0.224921159026397 0.881304964933756 551 0.564551914519318 4 3 1 -6.77084729788084 LTS-023 chr7 34725778 34818038 92261 * c(NPSR1, NPSR1-AS1) NA 0 NA 1.087 1 NA NA NA NA NA LTS-023 chr7 34818039 35289770 471732 * c(DPY19L1, NPSR1, NPSR1-AS1, DPY19L2P1, TBX20) 0.247164459666978 3 0.215579065155533 1.12759231534191 281 0.332887462759153 5 4 1 -6.7579369526365 LTS-023 chr7 35289771 35289774 4 * TBX20 NA 0 NA 0.465 1 NA NA NA NA NA LTS-023 chr7 35289775 35672976 383202 * c(LOC401324, TBX20, HERPUD2) 0.36 1 NA 0.803036913973628 38 0.156997451755602 3 3 0 -5.8128915885506 LTS-023 chr7 35672977 35709772 36796 * HERPUD2 0.489 1 NA 0.741237911303011 40 0.229075824419194 3 3 0 -5.76443503992397 LTS-023 chr7 35709773 36394943 685171 * c(KIAA0895, HERPUD2, EEPD1, SEPT7) 0.473180890877578 10 0.0255753787850737 0.731650938473985 344 0.168440243991708 4 2 2 -10.8265524058153 LTS-023 chr7 36394944 36465456 70513 * c(KIAA0895, ANLN) 0 1 NA 0.712120901045536 145 0.173419599720014 3 3 0 -5.76761832308284 LTS-023 chr7 36465457 37890232 1424776 * c(MIR1200, AOAH-IT1, AOAH, GPR141, NME8, ANLN, ELMO1) 0.331442498510609 13 0.230769726495194 0.722187532525043 397 0.301044474226704 3 2 1 -6.74464928475618 LTS-023 chr7 37890233 37890316 84 * NME8 0.453 1 NA 0.924575981500263 3 0.31119822193151 4 4 0 -5.76441169857032 LTS-023 chr7 37890317 39610177 1719861 * c(TRG-AS1, POU6F2-AS1, POU6F2, VPS41, AMPH, FAM183BP, TARP, NME8, EPDR1, YAE1D1, SFRP4, STARD3NL) 0.397792629582494 48 0.121240834632023 0.77494810143008 1016 0.280960731710802 3 2 1 -6.88213011316086 LTS-023 chr7 39610178 39610241 64 * YAE1D1 0.373 1 NA 0.449 1 NA NA NA NA NA LTS-023 chr7 39610242 42001260 2391019 * c(MPLKIP, GLI3, INHBA-AS1, LINC00265, INHBA, YAE1D1, RALA, LOC646999, SUGCT, CDK13) 0.243197906554762 9 0.242156170912721 0.77980745644528 579 0.235454987955885 3 2 1 -6.87574205162534 LTS-023 chr7 42001261 42001909 649 * GLI3 0.496 1 NA 0.918711842167837 15 0.272247996188349 4 4 0 -5.76442998173566 LTS-023 chr7 42001910 44151666 2149757 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, AEBP1, HECW1, LINC00957, GLI3, POLM, SPDYE1, DBNL, RASA4CP, UBE2D4, PGAM2, URGCP, COA1, PSMA2, BLVRA, MRPS24, MRPL32, C7orf25, POLR2J4, STK17A) 0.41588736914053 40 0.143017840020406 0.791565902066379 1348 0.793108170577545 4 2 2 -6.83328044974106 LTS-023 chr7 44151667 44179293 27627 * c(AEBP1, POLD2, MYL7) 0 1 NA 0.799806296651764 119 0.181630393697041 3 3 0 -5.76675678551122 LTS-023 chr7 44179294 44579945 400652 * c(YKT6, NUDCD3, GCK, NPC1L1, MYL7, CAMK2B) 0.324119649762392 22 0.219249038065485 0.788440234949524 604 0.291807974651032 3 2 1 -6.74457467526224 LTS-023 chr7 44579946 44610440 30495 * c(NPC1L1, DDX56) 0.455 1 NA 0.765903577422758 55 0.191325558565157 3 3 0 -5.76472352505563 LTS-023 chr7 44610441 45120453 510013 * c(TMED4, NACAD, SNHG15, OGDH, DDX56, PPIA, PURB, MYO1G, SNORA9, CCM2, ZMIZ2, H2AFV) 0.45513750592862 23 0.0331518246596001 0.754716674917825 990 0.229960942247373 4 2 2 -8.54513382770877 LTS-023 chr7 45120454 45120824 371 * NACAD 0 1 NA 0.920284553151634 9 0.849930552718541 4 4 0 -5.7644112336387 LTS-023 chr7 45120825 47851654 2730830 * c(RAMP3, ADCY1, PKD1L1, NACAD, IGFBP1, IGFBP3, C7orf65, SEPT7P2, TNS3, SNORA5B, SNORA5C, C7orf69, LINC00525, TBRG4) 0.329450805968892 32 0.202199017159636 0.810326861941306 1068 0.370335367488072 3 2 1 -6.81296773889146 LTS-023 chr7 47851655 47853648 1994 * c(PKD1L1, C7orf69) 0 1 NA 0.57823892825773 17 0.70729015283271 2 2 0 -5.76444016244112 LTS-023 chr7 47853649 47917169 63521 * c(PKD1L1, C7orf69) 0.170886730054686 10 0.214991498539929 0.815848295821716 143 0.674466990200913 6 5 1 -6.76111043913146 LTS-023 chr7 47917170 47920298 3129 * PKD1L1 0.445 1 NA 0.636962729732055 7 0.27453441106197 3 3 0 -5.76504201536321 LTS-023 chr7 47920299 53930522 6010224 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, COBL, SUN3, POM121L12, GRB10, HUS1, VWC2, LINC01446, FIGNL1, UPP1) 0.360761999001065 74 0.172093708598134 0.767500726716565 1894 0.298215024608842 3 2 1 -6.77109166779278 LTS-023 chr7 53930523 53932180 1658 * character(0) 0.479 1 NA 0.807403543309982 25 0.239636690290392 3 3 0 -5.76451494564571 LTS-023 chr7 53932181 55774934 1842754 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, FKBP9P1, LANCL2, VOPP1) 0.469847818310505 23 0.0316024590027384 0.764242175210561 802 0.19064576975996 4 2 2 -10.3489561037448 LTS-023 chr7 55774935 55779103 4169 * character(0) 0.373 1 NA 0.698069871501018 9 0.0612576525831671 3 3 0 -5.76746273384074 LTS-023 chr7 55779104 57532512 1753409 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) 0.359292313049502 42 0.145114222702883 0.734542119046628 688 0.235034905000116 3 2 1 -6.74851841476035 LTS-023 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.19965075987754 15 0.259420416276268 5 NA NA -5.76441037572473 LTS-023 chr7 62758725 63033612 274888 * ZNF733P 0.42 1 NA 0.797739782469718 19 0.401894330180931 3 3 0 -5.76882355187165 LTS-023 chr7 63033613 64639874 1606262 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.326340496138574 29 0.0488572364819199 1.02372756546022 602 0.379906352336936 3 2 1 -7.38171582643364 LTS-023 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.758 1 NA NA NA NA NA LTS-023 chr7 64643340 64865280 221941 * ZNF92 0.368333878635493 5 0.0232314442082278 0.594532193256264 59 0.0794929209967979 2 1 1 -7.902938087932 LTS-023 chr7 64865281 65150775 285495 * c(ZNF92, LOC441242, INTS4P2) NA 0 NA 0.644875605221541 33 0.28495575148263 3 NA NA -5.80962740910426 LTS-023 chr7 65150776 65154685 3910 * c(LOC441242, INTS4P2) NA 0 NA 0.899 1 NA NA NA NA NA LTS-023 chr7 65154686 65421338 266653 * c(VKORC1L1, LOC441242, CCT6P1, INTS4P2, SNORA22) 0 1 NA 1.1842985151422 81 0.432811792273344 5 5 0 -5.76471884270456 LTS-023 chr7 65421339 65824897 403559 * c(CRCP, GUSB, ASL, TPST1) 0.162837855152872 4 0.196163834587316 1.17161414189593 296 1.09684864663741 6 5 1 -6.74659623545206 LTS-023 chr7 65824898 66785793 960896 * c(MIR4650-2, KCTD7, RABGEF1, LINC00174, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, STAG3L4, GTF2IRD1P1, TPST1) 0.0460233524098621 21 0.0495236355308299 0.781111345675666 541 0.315611354826046 3 3 0 -6.75646877672656 LTS-023 chr7 66785794 66786524 731 * STAG3L4 NA 0 NA 0.785123534608812 15 0.0851074950535246 3 NA NA -5.76456025123595 LTS-023 chr7 69063868 70163644 1099777 * AUTS2 NA 0 NA 1.38852332701143 51 0.27198610835345 6 NA NA -5.77492339960848 LTS-023 chr7 70163645 70194032 30388 * AUTS2 NA 0 NA 0.669 1 NA NA NA NA NA LTS-023 chr7 70194033 70229685 35653 * AUTS2 0.458 1 NA 0.836724236206887 15 0.188154141470181 3 3 0 -5.77218109668553 LTS-023 chr7 70229686 70765521 535836 * c(AUTS2, WBSCR17) 0.373938606494304 8 0.153166051348575 0.775930573748929 171 0.223068521591634 3 2 1 -6.77097779642913 LTS-023 chr7 70765522 70772600 7079 * WBSCR17 NA 0 NA 1.439 1 NA NA NA NA NA LTS-023 chr7 70772601 71177191 404591 * c(MIR3914-1, MIR3914-2, WBSCR17) 0 1 NA 1.25239967841809 61 0.498032344177559 5 5 0 -5.76574234037197 LTS-023 chr7 71177192 71245421 68230 * c(WBSCR17, CALN1) 0.221 1 NA 1.75506967802992 49 0.736624046847887 7 7 0 -5.76460963986444 LTS-023 chr7 71245422 73536590 2291169 * c(MIR4284, MIR4650-1, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, TBL2, LIMK1, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, MLXIPL, LOC541473, NSUN5, NCF1B, STX1A, FZD9, ABHD11, CALN1, DNAJC30, FKBP6, BAZ1B, BCL7B, POM121) 0.19789019495431 51 0.137872959427063 1.43200974745055 1788 0.739275146116034 6 5 1 -6.74196692431109 LTS-023 chr7 73536591 73588801 52211 * c(LIMK1, EIF4H) NA 0 NA 1.35999015665365 16 0.20736373035482 6 NA NA -5.76662307445561 LTS-023 chr7 73588802 73634371 45570 * c(MIR590, EIF4H, LAT2) 0.385 1 NA 1.69927921205942 91 0.403453154181557 7 7 0 -5.76447154067716 LTS-023 chr7 73634372 74251390 617019 * c(GTF2I, RFC2, NCF1, CLIP2, LAT2, GTF2IRD2, GTF2IRD1) 0.313751125104764 19 0.16789808242464 1.77225643218722 499 0.806135267872637 7 5 2 -6.74468228097961 LTS-023 chr7 74251391 74456284 204894 * c(NA, STAG3L2, PMS2P5, RCC1L, GTF2IRD2) NA 0 NA 0.004 1 NA NA NA NA NA LTS-023 chr7 74456285 75145184 688900 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, GTF2IRD2B, SPDYE5, PMS2P3, STAG3L1, NCF1C, GATSL2, RCC1L) 0.30250680158565 6 0.201775122351592 1.39257989651964 259 0.634909827432761 6 4 2 -6.74982260523723 LTS-023 chr7 75145185 75156876 11692 * PMS2P3 NA 0 NA 2.658 1 NA NA NA NA NA LTS-023 chr7 75156877 75573290 416414 * c(MIR4651, CCL26, HIP1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A) 0.247379317916402 8 0.210754723722693 1.81917077107203 361 0.65809626340316 8 6 2 -6.73562322248445 LTS-023 chr7 75573291 77538297 1965007 * c(PMS2P9, LOC100133091, APTR, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, STYXL1, GSAP, POR, PHTF2, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, UPK3B, TMEM120A, TMEM60) 0.297789022870584 34 0.144379442273333 1.06092154672836 1457 0.346534807535258 4 3 1 -6.82958321784669 LTS-023 chr7 77538298 77539549 1252 * PHTF2 NA 0 NA 1.236 1 NA NA NA NA NA LTS-023 chr7 77539550 87913218 10373669 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, DBF4, TP53TG1, RUNDC3B, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, PHTF2, SRI, CACNA2D1, TMEM243, STEAP4, CD36, SEMA3E, MAGI2, DMTF1) 0.271330385319315 88 0.144790443733888 1.18504376334391 3994 0.369382789035844 5 4 1 -6.83698634559231 LTS-023 chr7 87913219 87913483 265 * STEAP4 NA 0 NA 1.05785302686174 6 0.121818580958188 4 NA NA -5.7644776192511 LTS-023 chr7 87913484 88424163 510680 * c(C7orf62, ZNF804B, STEAP4) 0.032 1 NA 0.932627792954912 39 0.455621226189459 4 4 0 -5.76759680661784 LTS-023 chr7 88424164 89983906 1559743 * c(C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, CFAP69, GTPBP10) 0.0480362327759747 12 0.0241447654155036 0.818270355366991 512 0.313643397312043 3 3 0 -6.89319347495596 LTS-023 chr7 89983907 89984370 464 * GTPBP10 NA 0 NA 1.471 1 NA NA NA NA NA LTS-023 chr7 89984371 90585160 600790 * c(LOC101409256, CDK14, GTPBP10, CLDN12) 0.0267901935065922 17 0.0158251010590584 1.28160203906283 264 0.389314344923125 5 5 0 -6.75409084720279 LTS-023 chr7 90585161 90613406 28246 * CDK14 NA 0 NA 1.028 1 NA NA NA NA NA LTS-023 chr7 90613407 95001555 4388149 * c(MIR4652, AKAP9, CDK6, BET1, COL1A2, CYP51A1, SAMD9L, PEG10, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, CDK14, PON1, PON3, ANKIB1, SAMD9, PPP1R9A, VPS50, MIR489, GATAD1, CASD1, MIR653, MTERF1, TFPI2, CALCR, FZD1, RBM48, NA, KRIT1, SGCE) 0.0335474349680007 51 0.0244117779352669 1.10704348097574 3417 0.331479123476044 5 5 0 -6.9883284397717 LTS-023 chr7 95001556 95001600 45 * c(PON1, PON3) NA 0 NA 0.598 1 NA NA NA NA NA LTS-023 chr7 95001601 97619518 2617918 * c(LOC100506136, SLC25A13, DLX5, DLX6, DYNC1I1, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, PDK4, ASB4, PON1, PON2, PON3, SDHAF3, TAC1, MIR591, SHFM1) 0.0509776473445935 19 0.0540455190432562 0.436718080996558 864 0.193925476473061 2 2 0 -7.73875187995162 LTS-023 chr7 97619519 97736145 116627 * character(0) NA 0 NA 0.656 1 NA NA NA NA NA LTS-023 chr7 97736146 99227355 1491210 * c(GS1-259H13.2, MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, BHLHA15, ZSCAN25, FAM200A, TMEM130, LMTK2, ZKSCAN5, BRI3, TECPR1, PTCD1, ZNF789, KPNA7, NPTX2, BAIAP2L1, SMURF1, ZNF655, TRRAP, ZNF394, MYH16, BUD31, ATP5J2) 0.0277645674696155 53 0.0296704810472175 0.764995254707107 2325 0.33532245337896 3 3 0 -6.82302559908136 LTS-023 chr7 99227356 99227361 6 * ZSCAN25 NA 0 NA 0.463 1 NA NA NA NA NA LTS-023 chr7 99227362 100491912 1264551 * c(PCOLCE-AS1, SAP25, MIR4658, CYP3A7-CYP3A51P, POP7, STAG3, COPS6, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, SLC12A9, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, TRIP6, ZAN, NA NA NA NA NA NA NA NA NA LTS-023 ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRIM4, AP4M1) 0.0665620081066979 76 0.039021080672402 0.411044040934934 3753 0.760550611381003 2 2 0 -6.84463195778126 LTS-023 NA NA NA NA LTS-023 chr7 100491913 100549499 57587 * ACHE NA 0 NA 0.396357358928941 16 0.077993349075418 2 NA NA -6.14048266725109 LTS-023 chr7 100549500 100549573 74 * character(0) 0.305 1 NA 1.299 1 NA NA NA NA NA LTS-023 chr7 100549574 100550184 611 * character(0) 0.411507943128289 19 0.087879269921133 0.794164923141248 35 0.422651140486598 4 2 2 -6.75007096354631 LTS-023 chr7 100550185 100550205 21 * character(0) 0.13 1 NA 0.662 1 NA NA NA NA NA LTS-023 chr7 100550206 100552739 2534 * character(0) 0.283620437928131 83 0.129751522293447 0.616812875546826 138 0.433842872537296 7 5 2 -6.74386325563933 LTS-023 chr7 100552740 100552788 49 * character(0) 0.387 1 NA 0.839 1 NA NA NA NA NA LTS-023 chr7 100552789 100553092 304 * character(0) 0.428712855852274 8 0.0138331899017234 0.688756041708805 17 0.621922570601461 19 10 9 -8.89002091084864 LTS-023 chr7 100553093 100554932 1840 * character(0) NA 0 NA 0.409 1 NA NA NA NA NA LTS-023 chr7 100554933 100615477 60545 * MUC12 0.399199658902318 16 0.0678713243326419 0.478898051216774 86 0.396610124472981 2 1 1 -6.73518198295491 LTS-023 chr7 100615478 100616182 705 * MUC12 0 1 NA 0.717477167372932 3 0.185990143107997 3 3 0 -5.76442994101175 LTS-023 chr7 100616183 101928585 1312403 * c(MIR4653, MUC12, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3, MYL10) 0.0731680377275632 28 0.0636560283640909 0.418438546762568 1564 0.135157629815086 2 2 0 -8.26398287272174 LTS-023 chr7 101928586 101944595 16010 * c(MIR4285, SH2B2) NA 0 NA 0.455909787068259 25 0.0709965492119159 2 NA NA -5.7943280931247 LTS-023 chr7 101944596 101950012 5417 * SH2B2 NA 0 NA 1.325 1 NA NA NA NA NA LTS-023 chr7 101950013 102066138 116126 * c(LOC100289561, LOC100630923, SH2B2, SPDYE6, PRKRIP1) 0.362 1 NA 1.08847783692229 111 0.231187209772353 5 5 0 -5.77831090978188 LTS-023 chr7 102066139 102279670 213532 * c(RASA4B, SPDYE2B, MIR4467, LOC100630923, MIR5090, RASA4, LRWD1, POLR2J2, POLR2J, ALKBH4, POLR2J3, PRKRIP1, ORAI2) 0.308333971819859 32 0.12560485514938 1.08545507806885 383 0.49027687434436 6 4 2 -6.80217675305507 LTS-023 chr7 102279671 102608415 328745 * c(SPDYE2B, RASA4, LRRC17, FAM185A, FBXL13, POLR2J2) 0 1 NA 1.06070777854508 177 0.295066372143982 4 4 0 -5.77968216770029 LTS-023 chr7 102608416 102737801 129386 * c(FBXL13, ARMC10) 0 1 NA 1.12545432500339 100 0.35021847308343 5 5 0 -5.76750779304041 LTS-023 chr7 102737802 102738731 930 * ARMC10 NA 0 NA 1.594 1 NA NA NA NA NA LTS-023 chr7 102738732 102740040 1309 * c(NAPEPLD, ARMC10) NA 0 NA 5.43333214719814 41 10.0822498679005 20 NA NA -5.76441031790826 LTS-023 chr7 102740041 102740159 119 * c(NAPEPLD, ARMC10) NA 0 NA 1.477 1 NA NA NA NA NA LTS-023 chr7 102740160 102957470 217311 * c(RPL19P12, NAPEPLD, DNAJC2, DPY19L2P2, ARMC10, PMPCB) NA 0 NA 1.07629746488988 237 0.277889948090355 4 NA NA -5.78018929506951 LTS-023 chr7 102957471 102960032 2562 * c(DNAJC2, PMPCB) NA 0 NA 0.427 1 NA NA NA NA NA LTS-023 chr7 102960033 107706991 4746959 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, COG5, DUS4L, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, LAMB4, HBP1, DNAJC2, GPR22, SLC26A4-AS1, SLC26A5, LHFPL3, LAMB1, ORC5, SLC26A4, PIK3CG, PUS7, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, PMPCB) 0.075629714467617 66 0.0442495598071161 0.420678823783412 3480 0.144675567629386 2 2 0 -10.0690034923862 LTS-023 chr7 107706992 107707017 26 * LAMB4 0 1 NA 1.801 1 NA NA NA NA NA LTS-023 chr7 107707018 113518502 5811485 * c(ZNF277, BMT2, C7orf66, THAP5, LAMB4, LSMEM1, IFRD1, LINC00998, DNAJB9, EIF3IP1, NRCAM, PNPLA8, GPR85, LRRN3, PPP1R3A, TMEM168, IMMP2L, DOCK4) 0.07617914687182 45 0.0472091092904749 0.449679127575315 1675 0.293464922346802 2 2 0 -7.53894237489789 LTS-023 chr7 113518503 113519267 765 * PPP1R3A 0.065 1 NA 0.489592217907227 19 0.311852632388257 2 2 0 -5.76442404957733 LTS-023 chr7 113519268 114066775 547508 * c(PPP1R3A, FOXP2) NA 0 NA 0.486692941585052 51 0.0845881973874305 2 NA NA -5.92672738589498 LTS-023 chr7 114066776 114103187 36412 * FOXP2 NA 0 NA 1.253 1 NA NA NA NA NA LTS-023 chr7 114103188 116438465 2335278 * c(MIR3666, TFEC, TES, MDFIC, MET, CAV1, CAV2, FOXP2) 0.0306769016796515 30 0.0233903654396912 1.11405094748247 959 0.666783303221362 4 4 0 -6.78727131135625 LTS-023 chr7 116438466 116502539 64074 * CAPZA2 NA 0 NA 0.394 1 NA NA NA NA NA LTS-023 chr7 116502540 120782165 4279626 * c(CFTR, ASZ1, TSPAN12, ST7-OT4, KCND2, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, ST7-AS1, ST7-AS2, ST7-OT3) 0.0704731804176004 22 0.0606635209212486 0.447302199782051 1434 0.149086428298925 2 2 0 -8.54021595720155 LTS-023 chr7 120782166 120876720 94555 * CPED1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-023 chr7 120876721 120906744 30024 * CPED1 0.0400585686133062 2 0.0106066017177982 1.12206884999821 26 0.311419067150063 3 3 0 -6.76912082241219 LTS-023 chr7 120906745 120935964 29220 * CPED1 0 1 NA 1.06423496090805 21 0.741606133431255 4 4 0 -5.76464330449134 LTS-023 chr7 120935965 120989886 53922 * c(FAM3C, WNT16, CPED1) 0.041 1 NA 1.03617824532579 144 0.404266567508241 4 4 0 -5.76509474703325 LTS-023 chr7 120989887 121000091 10205 * FAM3C NA 0 NA 0.471858822064847 45 0.424489173696878 2 NA NA -5.76469288977781 LTS-023 chr7 121000092 122526536 1526445 * c(AASS, FAM3C, FEZF1-AS1, RNF133, RNF148, FEZF1, PTPRZ1, CADPS2) 0.0117989857246715 11 0.0186000977514538 1.11578424417809 730 0.468292981189827 5 5 0 -7.02625602363361 LTS-023 chr7 122526537 122634736 108200 * CADPS2 NA 0 NA 1.678 1 NA NA NA NA NA LTS-023 chr7 122634737 123180726 545990 * c(IQUB, TAS2R16, SLC13A1) 0.0135733282356666 8 0.00961304916692484 2.03934028802213 316 0.841501370378686 9 9 0 -6.73716675606935 LTS-023 chr7 123180727 141908444 18727718 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, ASB15, CLEC2L, FMC1, C7orf77, TMEM213, MGC27345, ZNF800, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, CLEC5A, MKRN1, UBN2, POT1, HYALP1, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, WEE2-AS1, TPI1P2, FLJ40288, GPR37, NA NA NA NA NA NA NA NA NA LTS-023 HIPK2, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, LOC349160, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, FAM180A, LEP, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRF1, WEE2, ATP6V0A4, PAX4, TAS2R3, TAS2R4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, RBM28, TMEM140, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 AGK, METTL2B, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, STRIP2, PTN, KIAA1549, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, PARP12, CREB3L2, SMO, SPAM1, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, MIR592, MIR593, TMEM229A, UBE2H, LUZP6, C7orf49, GCC1, TTC26, CALD1, KDM7A, CALU, SLC37A3, FAM71F1, SLC35B4, TMEM209, TRIM24, MGAM, WASL, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, MGAM2, CPA5, CEP41) 0.015294013925895 323 0.0131380635895034 1.74582283125508 12640 0.754502255108112 7 7 0 -6.79983701023467 LTS-023 NA NA NA NA LTS-023 chr7 141908445 141955355 46911 * c(MOXD2P, PRSS58) 0 1 NA 1.8725611359267 53 0.573170019761131 8 8 0 -5.7644246931367 LTS-023 chr7 141955356 142131492 176137 * c(PRSS58, NA) 0.0633834210984523 9 0.100486455693182 1.64301747049198 143 1.61261457715441 16 15 1 -6.7631212680611 LTS-023 chr7 142131493 142168414 36922 * character(0) 0.413 1 NA 1.73108425666725 37 0.467743413530218 7 7 0 -5.76455376605688 LTS-023 chr7 142168415 142231744 63330 * character(0) 0.208572444282632 10 0.1213910119316 1.9203195006424 70 1.20816449286591 10 8 2 -6.73412431755896 LTS-023 chr7 142231745 142239639 7895 * character(0) 0 1 NA 2.3142198311638 11 2.17612514680233 10 10 0 -5.76441047331494 LTS-023 chr7 142239640 142457299 217660 * MTRNR2L6 0.0404524939687136 10 0.0632318485153381 1.9893090501178 130 1.69891588119526 4 4 0 -6.77198261624328 LTS-023 chr7 142457300 142458371 1072 * PRSS1 0.397 1 NA 2.4738807696336 7 1.66213696358462 11 11 0 -5.76441060149526 LTS-023 chr7 142458372 142482245 23874 * c(PRSS3P2, PRSS1) 0.264103597080684 9 0.181578495422779 3.43126696126957 59 9.32341454819649 19 14 5 -6.73316379877738 LTS-023 chr7 142482246 142482250 5 * PRSS3P2 0.011 1 NA 12.737 1 NA NA NA NA NA LTS-023 chr7 142482251 142498897 16647 * PRSS3P2 0.269937828674362 9 0.197273146790039 2.3603275948484 38 3.31922041910622 15 11 4 -6.73318469663263 LTS-023 chr7 142498898 142499680 783 * character(0) 0.012 1 NA 1.48966795038631 7 0.583323523727042 6 6 0 -5.76441191689041 LTS-023 chr7 142499681 143004371 504691 * c(OR9A2, C7orf34, TMEM139, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, CASP2, OR6W1P) 0.0159028243060258 30 0.0100059752263278 1.72990343826125 826 0.926039043709672 8 8 0 -6.73603559578038 LTS-023 chr7 143004372 143021003 16632 * c(CLCN1, CASP2) 0.0116738421301103 4 0.0014142135623731 3.46072882781276 52 1.15750190198203 11 11 0 -6.74973146404779 LTS-023 chr7 143021004 143305763 284760 * c(CLCN1, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX, FAM131B) 0.0545456244137549 7 0.135465862858508 1.75951662234982 482 0.52034950356138 7 7 0 -6.77825366712284 LTS-023 chr7 143305764 143306195 432 * character(0) NA 0 NA 4.134 1 NA NA NA NA NA LTS-023 chr7 143306196 143307635 1440 * character(0) NA 0 NA 4.10864516166203 41 4.7665037265914 18 NA NA -5.76441015203546 LTS-023 chr7 143307636 143318078 10443 * TCAF2 NA 0 NA 1.638 1 NA NA NA NA NA LTS-023 chr7 143318079 143556264 238186 * c(LOC154761, TCAF2, CTAGE6, TCAF1) 0.008 1 NA 2.50967942897708 94 3.31184992310608 11 11 0 -5.76442220242105 LTS-023 chr7 143556265 143573043 16779 * TCAF1 NA 0 NA 0.643 1 NA NA NA NA NA LTS-023 chr7 143573044 143884193 311150 * c(OR2A14, OR6B1, OR2F2, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.0235064712054495 8 0.00520816666399991 1.65323131546278 201 0.521220363534642 5 5 0 -6.82208079183647 LTS-023 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.043 1 NA NA NA NA NA LTS-023 chr7 143928927 143981556 52630 * c(OR2A7, ARHGEF34P) 0.00498242658534696 2 0.0197989898732233 0.568512554895481 77 2.22526072654277 20 20 0 -6.76738741440112 LTS-023 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 0.901 1 NA NA NA NA NA LTS-023 chr7 143982346 143982569 224 * ARHGEF34P 0 1 NA 1.90864660462632 5 5.51615239999767 8 8 0 -5.7644101348125 LTS-023 chr7 143982570 143982618 49 * ARHGEF34P 0.463 1 NA 7.594 1 NA NA NA NA NA LTS-023 chr7 143982619 144072678 90060 * c(ARHGEF34P, ARHGEF5) 0 1 NA 0.866402444553066 64 0.886420210556224 4 4 0 -5.76540246647133 LTS-023 chr7 144072679 144072689 11 * ARHGEF5 NA 0 NA 1.291 1 NA NA NA NA NA LTS-023 chr7 144072690 144708122 635433 * c(NOBOX, TPK1, ARHGEF5) 0.0111618949899278 4 0.0163401346383682 1.74708440425318 215 0.843938261780974 9 9 0 -6.77558075767929 LTS-023 chr7 145601067 151819022 6217956 * c(WDR86-AS1, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, GALNTL5, GIMAP7, ZNF467, GIMAP1, C7orf33, EZH2, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, WDR86, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NA NA NA NA NA NA NA NA NA LTS-023 GIMAP4, GIMAP5, TMEM176A, ZNF398, RARRES2, RHEB, GALNT11, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, MIR671, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.0712629155616536 199 0.0382698987189937 0.432449708471277 5615 0.185603278734748 2 2 0 -9.1223749637929 LTS-023 NA NA NA NA LTS-023 chr7 151819023 151849815 30793 * c(KMT2C, GALNT11) 0.105 1 NA 0.437991382124084 151 0.0911310062989034 2 2 0 -5.82488220548922 LTS-023 chr7 151849816 152517560 667745 * c(LINC01003, FABP5P3, ACTR3B, KMT2C, XRCC2) 0.309460171008442 9 0.205150554471588 0.464020099826201 455 0.233300431897274 2 1 1 -6.92426992664573 LTS-023 chr7 152517561 152550659 33099 * ACTR3B 0 1 NA 0.548930606692185 21 0.365405730139865 2 2 0 -5.76494669159915 LTS-023 chr7 152550660 156474244 3923585 * c(HTR5A-AS1, PAXIP1-AS2, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, HTR5A, INSIG1, ACTR3B, LMBR1, LINC00244, SHH) 0.0522060368423737 56 0.0418825041735109 0.441507812775152 1596 0.294192235813936 2 2 0 -7.34808247960891 LTS-023 chr7 156474245 156754975 280731 * c(LMBR1, NOM1) 0.132 1 NA 0.407183254775298 186 0.102209171761694 2 2 0 -6.56550371544239 LTS-023 chr7 156754976 158937357 2182382 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.0708572974642032 62 0.0715411391080386 0.42136650550214 1443 0.240071414312011 2 2 0 -7.58345948307028 LTS-023 chr7 158937358 159025951 88594 * VIPR2 NA 0 NA 0.198459025543921 5 0.0506438545136525 1 NA NA -7.74982844798388 LTS-023 chr8 182757 196665 13909 * ZNF596 0.162 1 NA 0.429891209677586 53 0.0912182386022719 2 2 0 -5.79830991196653 LTS-023 chr8 196666 6372233 6175568 * c(LOC100287015, TDRP, ERICH1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.0660517435575837 90 0.0730645704885354 0.457001169183298 1971 0.216189176139039 2 2 0 -7.75639105879352 LTS-023 chr8 6372234 6378784 6551 * c(ANGPT2, MCPH1) 0.048 1 NA 0.464599271451114 9 0.115574410854845 2 2 0 -5.76775985782905 LTS-023 chr8 6378785 6479275 100491 * c(ANGPT2, MCPH1) 0.0714733285782192 2 0.000707106781186548 0.483826988340243 37 0.136874276500618 16 15 1 -13.3211140429884 LTS-023 chr8 6479276 6500444 21169 * MCPH1 NA 0 NA 1.011 1 NA NA NA NA NA LTS-023 chr8 6500445 22886020 16385576 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, PEBP4, LINC00599, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, EGR3, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, NA NA NA NA NA NA NA NA NA LTS-023 RHOBTB2, PSD3, SLC39A14, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, FAM86B3P, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, MIR320A, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, C8orf58, PINX1, PIWIL2, INTS10, AGPAT5, PPP3CC, CSGALNACT1, HR, BIN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, PDLIM2, SFTPC, USP17L4, USP17L3, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, NUDT18, TUSC3, BIN3-IT1, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, TNFRSF10B, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MFHAS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 RP1L1, PHYHIP) 0.0381914660339523 355 0.0276038458992009 0.82921439616121 9078 1.27229943842736 3 3 0 -6.79915605649119 LTS-023 NA NA NA NA LTS-023 chr8 22886021 22926313 40293 * c(LOC286059, TNFRSF10B) 0.074 1 NA 0.660306536668009 17 0.196918092856186 3 3 0 -5.77387514116145 LTS-023 chr8 22926314 22926735 422 * c(LOC286059, TNFRSF10B) 0.036 1 NA 0.828798987020651 10 0.103136155962236 3 3 0 -5.76466678488913 LTS-023 chr8 22926736 22960201 33466 * c(LOC254896, LOC286059) NA 0 NA 0.446 1 NA NA NA NA NA LTS-023 chr8 22960202 33247253 10287052 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, DCTN6, PNMA2, ADAM28, RBPMS, CHRNA2, CLU, NKX2-6, ADRA1A, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, R3HCC1, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, LOC254896, ADAMDEC1, GNRH1, SCARA5, FAM183CP, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, KCTD9, NA NA NA NA NA NA NA NA NA LTS-023 ELP3, PPP2CB, PPP2R2A, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, EBF2, BNIP3L, STC1, WRN, HMBOX1, FZD3, UBXN8, DOCK5, STMN4, FUT10, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10A, CHMP7, ENTPD4) 0.0667923117680799 224 0.0425154416685168 0.449243213614788 6943 0.178535691905928 2 2 0 -9.23234862053361 LTS-023 NA NA NA NA LTS-023 chr8 33247254 33310843 63590 * FUT10 0 1 NA 0.750284795220085 11 1.06310590424302 3 3 0 -5.76441079929615 LTS-023 chr8 33310844 33342444 31601 * c(TTI2, FUT10) 0.444 1 NA 0.529559890807505 21 0.179071746727926 2 2 0 -5.76475466666196 LTS-023 chr8 33342445 33424546 82102 * c(RNF122, TTI2, MAK16) 0.357141714783469 18 0.136470746703762 0.62280682435469 215 0.243505097646587 3 2 1 -6.76935908630958 LTS-023 chr8 33424547 35093139 1668593 * c(UNC5D, DUSP26, RNF122) NA 0 NA 0.672758229084319 46 0.130787314901448 3 NA NA -6.34513189173507 LTS-023 chr8 35093140 35093187 48 * UNC5D NA 0 NA 0.335 1 NA NA NA NA NA LTS-023 chr8 35093188 35541181 447994 * UNC5D 0 1 NA 0.459880320883143 31 0.401335659801066 2 2 0 -5.78714473257705 LTS-023 chr8 35541182 36925483 1384302 * c(UNC5D, KCNU1) 0.0494301601511824 10 0.061273158887069 0.478596863613996 389 0.297366026438467 2 2 0 -6.79521050223071 LTS-023 chr8 36925484 37333330 407847 * character(0) NA 0 NA 0.861 1 NA NA NA NA NA LTS-023 chr8 37333331 39311750 1978420 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.0355793326915806 52 0.0260745826665894 0.759102910597299 2740 0.249933885533197 3 3 0 -6.74853523784325 LTS-023 chr8 39311751 39332219 20469 * ADAM3A 0.0384571834362447 3 0.011060440015358 1.11710441589755 31 0.443922632027031 3 3 0 -6.74479205912835 LTS-023 chr8 39332220 39442105 109886 * c(LOC100130964, ADAM3A, ADAM18) 0.384 1 NA 0.964671322637637 28 0.639978127726451 4 4 0 -5.76443608095345 LTS-023 chr8 39442106 40625077 1182972 * c(IDO2, ADAM2, IDO1, C8orf4, ZMAT4, ADAM18) 0.228692836294342 13 0.143136656954473 1.16441731220298 425 0.425103409003365 5 4 1 -6.74335996422635 LTS-023 chr8 40625078 41119724 494647 * c(SFRP1, ZMAT4) 0.492 1 NA 1.2073851910152 25 0.212508807660608 5 5 0 -5.76441070280247 LTS-023 chr8 41119725 41470543 350819 * c(GPAT4, GOLGA7, SFRP1, GINS4) 0.453454026853333 11 0.0389148254057967 1.28308394728989 332 0.365833198395827 6 3 3 -7.81603633751585 LTS-023 chr8 41470544 41471870 1327 * GPAT4 NA 0 NA 0.957 1 NA NA NA NA NA LTS-023 chr8 41471871 41479694 7824 * GPAT4 0.383 1 NA 1.09024775178807 43 0.377554771865729 5 5 0 -5.76475107418225 LTS-023 chr8 41479695 41480496 802 * GPAT4 0 1 NA 1.22606564392345 20 1.35679665311156 5 5 0 -5.7644101985716 LTS-023 chr8 41480497 41575161 94665 * c(GPAT4, NKX6-3, ANK1, MIR486-1) 0.183009922877335 9 0.194709398848643 1.12766871439336 401 0.456862992335324 6 5 1 -6.7490420050251 LTS-023 chr8 41575162 41580636 5475 * c(NKX6-3, ANK1) 0.318 1 NA 1.24699668195935 19 0.404239940907082 5 5 0 -5.76443146240775 LTS-023 chr8 41580637 42263157 682521 * c(AP3M2, NKX6-3, DKK4, ANK1, IKBKB, PLAT, POLB, VDAC3, KAT6A) 0.324731733911309 28 0.0740516407829395 1.10233545346256 850 0.288573345351705 6 4 2 -7.07242704940234 LTS-023 chr8 42263158 42263338 181 * VDAC3 0 1 NA 1.28426735682925 5 1.03501222215006 5 5 0 -5.76441052250884 LTS-023 chr8 42263339 43197436 934098 * c(MIR4469, CHRNB3, SMIM19, HGSNAT, FNTA, POTEA, THAP1, SLC20A2, VDAC3, RNF170, POMK, HOOK3, CHRNA6) 0.260697147268709 22 0.159063084765337 1.1107305409669 879 0.415710755984436 4 3 1 -6.7863955489926 LTS-023 chr8 43197437 43212050 14614 * POTEA NA 0 NA 0.977830215575226 5 0.123567795157153 4 NA NA -5.76441055230241 LTS-023 chr8 47752736 48103909 351174 * c(LOC100287846, LINC00293) 0.477 1 NA 1.28985198603078 67 0.376215324181849 5 5 0 -5.77095946061948 LTS-023 chr8 48103910 52336182 4232273 * c(LOC100287846, CEBPD, PXDNL, SPIDR, MCM4, C8orf22, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.399472410756885 32 0.154951605348251 1.3902590304839 1274 0.490656517253689 6 3 3 -6.74476230193899 LTS-023 chr8 52336183 52387700 51518 * PXDNL 0 1 NA 1.29751953663904 45 0.55200051877446 5 5 0 -5.76494023453536 LTS-023 chr8 52387701 54163983 1776283 * c(PCMTD1, PXDNL, NPBWR1, FAM150A, OPRK1, ST18, RB1CC1) 0.272591282221189 22 0.198175361803565 1.40762026330039 772 0.563574024472258 6 4 2 -6.7938972120124 LTS-023 chr8 54163984 54625439 461456 * OPRK1 NA 0 NA 0.967 1 NA NA NA NA NA LTS-023 chr8 54625440 57872751 3247312 * c(SBF1P1, LINC00968, LYPLA1, XKR4, TMEM68, SDR16C5, SNORD54, MRPL15, LYN, MOS, ATP6V1H, PENK, PLAG1, IMPAD1, RP1, RPS20, SOX17, TCEA1, CHCHD7, RGS20, TGS1) 0.254618452575028 46 0.1866728518644 1.01076258077604 1618 0.418314412996212 4 3 1 -6.74774639600819 LTS-023 chr8 57872752 57873612 861 * IMPAD1 NA 0 NA 0.923931680526791 18 0.0920869154657707 4 NA NA -5.7645998969763 LTS-023 chr8 57873613 59345705 1472093 * c(LINC01606, UBXN2B, LINC00588, LOC286177, IMPAD1, FAM110B) 0.441 1 NA 0.780848319186207 172 0.134284037168901 3 3 0 -5.85930349597556 LTS-023 chr8 59345706 61736783 2391078 * c(UBXN2B, CYP7A1, CHD7, RAB2A, SDCBP, CA8, NSMAF, TOX) 0.354695494860912 11 0.175197239496725 0.747695550283547 797 0.224870078713016 3 2 1 -6.73704195682456 LTS-023 chr8 61736784 61737802 1019 * CHD7 0 1 NA 0.739715331549613 19 0.588093176967155 3 3 0 -5.76441030254769 LTS-023 chr8 61737803 63659531 1921729 * c(LOC100130298, MIR4470, CLVS1, NKAIN3, ASPH, CHD7) 0.169440501613136 10 0.240304344067638 0.810264991282365 634 0.341710717863673 3 3 0 -6.96933483671302 LTS-023 chr8 63659532 63939839 280308 * c(NKAIN3, UG0898H09, GGH) 0.49 1 NA 0.768002309385633 71 0.174224427988291 3 3 0 -5.7686821185853 LTS-023 chr8 63939840 66439710 2499871 * c(MIR124-2HG, YTHDF3-AS1, YTHDF3, BHLHE22, LINC01289, LINC01299, LOC401463, MIR124-2, LINC00251, TTPA, GGH, CYP7B1) 0.414970989792767 6 0.0638613080563393 0.75812691880842 314 0.357540252648986 4 2 2 -7.45492871975338 LTS-023 chr8 66439711 66439774 64 * LINC01299 0.299 1 NA 2.155 1 NA NA NA NA NA LTS-023 chr8 66439775 67999025 1559251 * c(TCF24, LINC00967, RRS1-AS1, C8orf44-SGK3, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, C8orf46, PTTG3P, LINC01299, PPP1R42, MYBL1, PDE7A, ARMC1, C8orf44, SNHG6, SNORD87, CSPP1, VCPIP1, TRIM55, DNAJC5B, MTFR1) 0.342336047899628 44 0.119969437616191 1.0690489709328 1549 0.337700889813399 5 3 2 -6.9128442172766 LTS-023 chr8 67999026 67999086 61 * CSPP1 NA 0 NA 1.554 1 NA NA NA NA NA LTS-023 chr8 67999087 70594545 2595459 * c(LINC01592, ARFGEF1, C8orf34, SULF1, C8orf34-AS1, CPA6, CSPP1, PREX2, SLCO5A1) 0.328817178531242 67 0.123782841171265 1.19043969361178 1367 0.335624226036431 5 3 2 -6.83997551301608 LTS-023 chr8 70594546 86240185 15645640 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, MIR5708, MIR5681A, MIR5681B, LOC101241902, NCOA2, STMN2, RALYL, RDH10, SBSPON, E2F5, EYA1, FABP4, FABP5, HEY1, TRAM1, LY96, STAU2, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, LOC392232, C8orf59, MIR2052HG, PI15, ZC2HC1A, LACTB2, PMP2, GDAP1, TMEM70, UBE2W, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, PRDM14, SNX16, FABP9, FABP12, ZBTB10, NA NA NA NA NA NA NA NA NA LTS-023 TCEB1, TERF1, TPD52, ZFAND1, ZFHX4, SLCO5A1, CRISPLD1, LRRCC1, TRPA1, MSC, CHMP4C, KCNB2) 0.317516528637717 124 0.117159970527232 1.11398268726878 4969 0.474976332672278 5 3 2 -7.16007197500903 LTS-023 NA NA NA NA LTS-023 chr8 86240186 86241937 1752 * c(CA13, CA1) 0 1 NA 1.41460404967417 17 0.820220482374027 6 6 0 -5.76441052214783 LTS-023 chr8 86241938 87076452 834515 * c(REXO1L2P, REXO1L1P, CA13, CA1, CA2, CA3, PSKH2) 0.212959404247687 9 0.181553099058589 1.14353895312036 165 0.606214070063977 5 4 1 -6.73710367066136 LTS-023 chr8 87076453 87111117 34665 * PSKH2 0.364 1 NA 1.15681309013593 23 0.301210397492039 5 5 0 -5.76482405566746 LTS-023 chr8 87111118 101076249 13965132 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, LINC00534, CDH17, RIDA, CPQ, POP1, WWP1, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, DCAF4L2, C8orf37, VPS13B, SLC7A13, DECR1, CNBD1, TMEM64, ERICH5, ATP6V0D2, RAD54B, KIAA1429, RGS22, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, MMP16, FLJ46284, NBN, MTERF3, RMDN1, OTUD6B, NA NA NA NA NA NA NA NA NA LTS-023 PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, SDC2, NECAB1, LINC00535, STK3, MIR599, OSGIN2, UQCRB, CALB1, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.295221356801171 162 0.117095274346529 1.12250871956845 6578 0.327247252149143 5 4 1 -7.386754796946 LTS-023 NA NA NA NA LTS-023 chr8 101076250 101078375 2126 * RGS22 NA 0 NA 1.025 1 NA NA NA NA NA LTS-023 chr8 101078376 101225559 147184 * c(RGS22, FBXO43, POLR2K, SPAG1) 0.290464973380683 6 0.150591721773365 1.02285169694963 194 0.277011511139091 4 3 1 -6.75242791294432 LTS-023 chr8 101225560 101232555 6996 * SPAG1 0.408 1 NA 1.06666272219102 13 0.211985394997645 4 4 0 -5.76513013408526 LTS-023 chr8 101232556 102381529 1148974 * c(MIR4471, ANKRD46, SNX31, RNF19A, PABPC1, FLJ42969, ZNF706, SPAG1, YWHAZ, NACAP1) 0.357281547921613 15 0.0978821935263192 0.984369092411665 499 0.261800844658925 4 2 2 -6.82943231676753 LTS-023 chr8 102381530 102504605 123076 * NACAP1 NA 0 NA 1.342 1 NA NA NA NA NA LTS-023 chr8 102504606 104053252 1548647 * c(MIR5680, ODF1, RRM2B, UBR5, AZIN1, ATP6V1C1, KLF10, GRHL2, NCALD) 0.410669356165483 20 0.110713891583097 1.36391944734198 953 0.514158044802938 6 3 3 -6.75212278048953 LTS-023 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 1.784 1 NA NA NA NA NA LTS-023 chr8 104054528 113241088 9186561 * c(MIR3151, BAALC-AS1, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, SYBU, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.372442954514551 83 0.171189362477486 1.55484670979432 2971 2.71618018761645 7 4 3 -6.74397123964289 LTS-023 chr8 113241089 113301614 60526 * CSMD3 0 1 NA 1.54681475137056 51 0.547546567094759 6 6 0 -5.76506613236618 LTS-023 chr8 113301615 117874252 4572638 * c(MIR2053, LINC00536, CSMD3, RAD21, TRPS1, UTP23, EIF3H) 0.348188961931462 17 0.220541912783302 1.52533107446737 872 2.15094022926802 6 4 2 -6.73719377420298 LTS-023 chr8 117874253 117875465 1213 * RAD21 NA 0 NA 1.002 1 NA NA NA NA NA LTS-023 chr8 117875466 117888936 13471 * c(MIR3610, RAD21, RAD21-AS1) 0.443928375197713 2 0.00707106781186548 0.880068087097632 56 0.513174247007981 4 2 2 -13.6159263633191 LTS-023 chr8 117888937 118809392 920456 * c(SLC30A8, AARD, RAD21-AS1, MED30) 0.219089565226922 10 0.230897403863948 1.63878153032919 192 0.701162207701262 6 5 1 -6.76856379643278 LTS-023 chr8 118809393 118809805 413 * character(0) 0.378 1 NA 1.61584292730258 13 0.378354670131421 7 7 0 -5.76441181856182 LTS-023 chr8 118809806 126448674 7638869 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, TRIB1, COLEC10, RNF139, ZHX1, MAL2, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, EXT1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, NDUFB9, NOV, TNFRSF11B, ENPP2, TRMT12, WDYHV1, SAMD12-AS1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.420881395978209 128 0.128037889774909 1.45147757219744 3857 0.467998389911261 6 3 3 -6.75641190825137 LTS-023 chr8 126448675 127566541 1117867 * c(LINC00861, TRIB1, FAM84B) 0 1 NA 1.50434670248593 71 0.360922761597318 6 6 0 -5.77517088288517 LTS-023 chr8 127566542 128100425 533884 * c(PCAT1, FAM84B) 0.242941450869954 3 0.265581123827228 1.49814151259017 90 0.428293903080268 6 5 1 -6.76843148185112 LTS-023 chr8 128100426 128100561 136 * character(0) NA 0 NA 2.086 1 NA NA NA NA NA LTS-023 chr8 128100562 131812756 3712195 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR5194, ADCY8, ASAP1-IT1, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977) 0.292226391860352 18 0.137390491151402 1.83329046868656 559 0.594371930004506 8 6 2 -6.7770104333168 LTS-023 chr8 131812757 131848460 35704 * ADCY8 0 1 NA 1.98389472359301 13 0.743137492886298 8 8 0 -5.76448770569262 LTS-023 chr8 131848461 133025038 1176578 * c(ADCY8, EFR3A) 0.0665632442055159 9 0.141020782550343 1.99905690626674 293 0.837886218631377 8 8 0 -6.81220329890257 LTS-023 chr8 133025039 133036743 11705 * c(EFR3A, OC90) 0.33 1 NA 2.37481879536304 25 0.996090650158575 10 10 0 -5.76441052720445 LTS-023 chr8 133036744 133199554 162811 * c(HHLA1, KCNQ3, OC90) 0.265642199301227 14 0.149433527432364 1.97695613568339 343 0.814095271551346 8 6 2 -6.73477250091357 LTS-023 chr8 133199555 133459378 259824 * KCNQ3 NA 0 NA 1.494 1 NA NA NA NA NA LTS-023 chr8 133459379 139163939 5704561 * c(NDRG1, KHDRBS3, TMEM71, LRRC6, LINC01591, KCNQ3, MIR30B, MIR30D, FAM135B, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1, HPYR1) 0.276642239435086 51 0.201579690853781 1.61100692321748 1559 0.706847706457296 7 5 2 -6.74479316625835 LTS-023 chr8 139163940 139165272 1333 * FAM135B 0.462 1 NA 1.95718535906143 30 0.428828643804406 8 8 0 -5.76441435561528 LTS-023 chr8 139165273 141526847 2361575 * c(COL22A1, FAM135B, KCNK9, CHRAC1, TRAPPC9) 0.388613916486899 21 0.143611745109282 1.6837342545939 743 0.531513789400751 7 4 3 -6.73374274054761 LTS-023 chr8 141526848 141561573 34726 * c(AGO2, CHRAC1) 0 1 NA 1.6357282396054 71 0.422279013677396 7 7 0 -5.76445229587353 LTS-023 chr8 141561574 143365866 1804293 * c(MIR4472-1, PTP4A3, TSNARE1, DENND3, AGO2, GPR20, MROH5, SLC45A4, PTK2, LINC00051, LINC01300) 0.252728837151263 29 0.215915207540577 1.58152556572942 1097 0.523476666377151 7 5 2 -6.7643528051195 LTS-023 chr8 143365867 143425720 59854 * TSNARE1 0.469 1 NA 1.90963577469269 37 0.295175046045237 8 8 0 -5.76442792465459 LTS-023 chr8 143425721 143921812 496092 * c(LOC100288181, LYPD2, TSNARE1, ARC, GML, THEM6, LY6K, SLURP1, ADGRB1, LYNX1, PSCA, LY6D, JRK) 0.370372591845387 41 0.14224801854679 1.67684035670368 688 0.80469751428758 8 5 3 -6.74075851216049 LTS-023 chr8 143921813 143928152 6340 * GML 0 1 NA 1.47160964659164 15 0.807939548658013 6 6 0 -5.76441342252856 LTS-023 chr8 143928153 143996298 68146 * c(CYP11B1, CYP11B2, GML) 0.227462491092932 15 0.231499912578406 1.76942277778172 169 1.3755001683857 9 7 2 -6.73387993723069 LTS-023 chr8 143996299 144063784 67486 * c(LOC100133669, CYP11B2) 0.474 1 NA 1.65172401792045 37 0.715823610564391 7 7 0 -5.76441691708534 LTS-023 chr8 144063785 144804693 740909 * c(CDC42P3, CCDC166, LOC100133669, RHPN1, TOP1MT, EEF1D, MAPK15, ZC3H3, GLI4, ZNF707, BREA2, C8orf31, ZFP41, GPIHBP1, MAFA, LY6E, LY6H, MROH6, PYCRL, TSTA3, RHPN1-AS1, GSDMD, ZNF696, TIGD5, NAPRT, ZNF623) 0.388405491639353 44 0.132986883185394 1.58683454687724 1471 0.6004468328578 7 4 3 -6.73632527659914 LTS-023 chr8 144804694 144874230 69537 * c(FAM83H-AS1, MIR4664, SCRIB, FAM83H) 0 1 NA 1.61129867778897 171 0.425155717805282 7 7 0 -5.76467762967931 LTS-023 chr8 144874231 144904117 29887 * c(MIR937, PUF60, SCRIB) 0 1 NA 1.6641508975672 211 0.415749918754902 7 7 0 -5.76441045930985 LTS-023 chr8 144904118 145627113 722996 * c(MIR939, MIR1234, CYC1, ADCK5, PUF60, BOP1, FBXL6, OPLAH, GRINA, CPSF1, HSF1, NRBP2, WDR97, TMEM249, SPATC1, HGH1, PLEC, EXOSC4, SCX, MIR661, MROH1, SLC52A2, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, DGAT1, GPAA1) 0.0406245960106432 25 0.046129419390811 0.761327087947134 2109 0.272819180127301 3 3 0 -6.73584844421665 LTS-023 chr8 145627114 145634391 7278 * CPSF1 NA 0 NA 1.297 1 NA NA NA NA NA LTS-023 chr8 145634392 145639253 4862 * c(CPSF1, SLC39A4) 0 1 NA 1.46089574605859 27 0.357304669407813 6 6 0 -5.764416314979 LTS-023 chr8 145639254 145639320 67 * SLC39A4 0.396 1 NA 1.16577089731016 3 0.514405482085874 5 5 0 -5.76441031568268 LTS-023 chr8 145639321 146068322 429002 * c(MFSD3, GPT, COMMD5, ZNF517, C8orf82, LRRC24, TONSL, CYHR1, VPS28, SLC39A4, RPL8, ZNF7, ARHGAP39, ZNF34, PPP1R16A, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.380718040964758 59 0.145354836996308 1.60940518009158 1520 0.543631845005667 7 4 3 -6.73732095790498 LTS-023 chr8 146068323 146068719 397 * c(COMMD5, ZNF7) 0 1 NA 1.67805302972183 9 0.220982905321757 7 7 0 -5.76441034340425 LTS-023 chr8 146068720 146280802 212083 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF7, ZNF16) 0.215599631707237 14 0.224880639891037 1.53004292377159 500 0.480780902603896 6 5 1 -6.74929702679918 LTS-023 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.638728621960641 3 0.346410161513775 3 NA NA -5.76442263142554 LTS-023 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.082 1 NA 0.528210617209543 5 0.246370655720197 2 2 0 -5.76505534847345 LTS-023 chr9 154796 3469270 3314475 * c(DMRT2, C9orf66, KCNV2, DMRT1, KANK1, VLDLR-AS1, CBWD1, DMRT3, RFX3, SMARCA2, VLDLR, DOCK8, PUM3) 0.0468243495539022 47 0.0263768497998795 0.763148362772821 1505 0.36452381309718 3 3 0 -6.79166356775432 LTS-023 chr9 3469271 3824079 354809 * RFX3 NA 0 NA 0.404 1 NA NA NA NA NA LTS-023 chr9 3824080 8733987 4909908 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, GLIS3, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, RLN1, RLN2, SLC1A1, ERMP1, PDCD1LG2, GLIS3-AS1, TPD52L3, IL33, TMEM261) 0.0692449589421391 88 0.0452694475779475 0.425447922645787 2771 0.193044284106134 2 2 0 -8.8625722102245 LTS-023 chr9 12693908 12775864 81957 * c(LURAP1L, TYRP1) 0.208 1 NA 0.921140106532804 89 0.876893496694698 4 4 0 -5.76463176336804 LTS-023 chr9 12775865 13105959 330095 * c(LURAP1L, MPDZ) 0.493 1 NA 0.843574286899637 27 0.131352866350817 3 3 0 -5.92960452937821 LTS-023 chr9 13105960 16699292 3593333 * c(LINC00583, C9orf92, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, LINC01235, NFIB, BNC2, SNAPC3, MPDZ, CER1) 0.450228947065617 51 0.0736777455957933 0.793434833234228 1733 0.239495963269841 3 2 1 -7.96982582725878 LTS-023 chr9 16699293 17299179 599887 * c(BNC2, CNTLN) 0 1 NA 0.676368355859015 84 0.164843684975162 3 3 0 -5.89220037106948 LTS-023 chr9 17299180 17796953 497774 * c(CNTLN, SH3GL2) 0.327355938664695 8 0.207797935848403 0.797928118212052 197 0.213741785248981 3 2 1 -6.76374262782976 LTS-023 chr9 17796954 19573306 1776353 * c(MIR3152, RRAGA, PLIN2, SAXO1, SLC24A2, ACER2, HAUS6, DENND4C, RPS6, SH3GL2, SCARNA8, ADAMTSL1) 0.362137563822993 46 0.0574168922609733 1.03809784260424 1063 0.300692099719763 4 2 2 -6.98616815338417 LTS-023 chr9 19573307 19622268 48962 * SLC24A2 0.343 1 NA 0.93699517542135 23 0.374393052957406 4 4 0 -5.76477638459499 LTS-023 chr9 19622269 21006076 1383808 * c(MIR4473, MIR4474, SLC24A2, HACD4, MLLT3, FOCAD, MIR491) 0.202317813945519 9 0.198852401991472 1.04392046286782 488 0.2557074667322 4 3 1 -6.84747469852344 LTS-023 chr9 21006077 21077371 71295 * c(IFNB1, HACD4) 0.378 1 NA 1.00347240261943 53 0.263156328568405 4 4 0 -5.76485172259945 LTS-023 chr9 21077372 21367638 290267 * c(IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KLHL9) 0.347159302508958 3 0.0110151410945722 1.02712116413765 261 0.253489173761454 3 2 1 -7.21312560065987 LTS-023 chr9 21367639 21385066 17428 * c(IFNA2, IFNA13) 0.431 1 NA 0.545082345324575 39 0.39068191361366 2 2 0 -5.76460278270861 LTS-023 chr9 21385067 21385156 90 * IFNA2 NA 0 NA 0.964 1 NA NA NA NA NA LTS-023 chr9 21385157 21866313 481157 * c(IFNE, IFNA1, IFNA2, IFNA8, MIR31, MTAP, MIR31HG) 0.313952868930962 11 0.12300960790265 1.13824134014523 222 0.424638320710797 6 4 2 -6.83676554955706 LTS-023 chr9 21866314 21931084 64771 * MTAP 0 1 NA 1.40862892685877 21 0.794125721724691 6 6 0 -5.76443474748171 LTS-023 chr9 21931085 23731027 1799943 * c(CDKN2B-AS1, CDKN2A, CDKN2B, ELAVL2, LINC01239, MTAP, CDKN2A-AS1, DMRTA1) 0.135342122077499 9 0.182099636951252 1.06795592120117 307 0.523522602156593 5 4 1 -6.90496684582242 LTS-023 chr9 23731028 24545451 814424 * c(IZUMO3, ELAVL2) 0.396 1 NA 1.10519843950538 53 0.298667878171354 5 5 0 -5.80666623027152 LTS-023 chr9 24545452 34521867 9976416 * c(SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, SNORD121B, TOPORS, PTENP1, TAF1L, LINC00032, LINGO2, C9orf72, FAM219A, DDX58, DCAF12, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, KIF24, AQP3, AQP7, ENHO, LINC01242, TMEM215, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, UBAP1, CHMP5, EQTN, APTX, UBE2R2, SMU1, UBAP2, PRSS3, IFNK, BAG1, KIAA1161, LRRC19, NOL6, TEK, MOB3B, CAAP1, IFT74, NA NA NA NA NA NA NA NA NA LTS-023 C9orf24, PLAA) 0.308519390036945 128 0.127572053902914 1.12240644613038 3924 0.406926980679871 5 3 2 -7.10526137824552 LTS-023 NA NA NA NA LTS-023 chr9 34521868 34552145 30278 * c(CNTFR, ENHO) 0 1 NA 1.67645500926736 3 0.876388802606088 7 7 0 -5.76441087569268 LTS-023 chr9 34552146 35405187 853042 * c(SIGMAR1, UNC13B, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, C9orf131, FANCG, PHF24, DNAJB5, GALT, FAM205A, STOML2, IL11RA, FAM205BP, CNTFR-AS1, CCL19, CCL21, VCP, FAM214B, PIGO) 0.163998334809105 21 0.170360933371027 1.12518545155063 1653 0.407644707802761 5 4 1 -6.80206569003014 LTS-023 chr9 35405188 35559213 154026 * c(UNC13B, ATP8B5P, RUSC2) 0.308 1 NA 1.08345206029102 91 0.189784484158612 4 4 0 -5.79173057782471 LTS-023 chr9 35559214 36263444 704231 * c(GNE, MIR4667, CREB3, CLTA, GLIPR2, LINC00961, CCDC107, SPAG8, SIT1, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, CA9, RECK, HINT2, ARHGEF39, CCIN, LINC00950, CD72, RGP1, RUSC2) 0.288442455888145 48 0.119125267445541 1.08145942838264 2019 0.319028014348126 4 3 1 -6.79852255651975 LTS-023 chr9 36263445 36669350 405906 * c(GNE, RNF38, MELK) 0 1 NA 0.996891064673053 227 0.329914805189298 4 4 0 -5.76531923856328 LTS-023 chr9 36669351 36838532 169182 * c(MIR4475, PAX5, MELK) 0.108170636539178 10 0.164171861169934 1.24605102660568 144 0.905384649306194 9 8 1 -6.77291743461382 LTS-023 chr9 36838533 36840623 2091 * PAX5 0.341 1 NA 1.11619917881572 45 0.294357663979442 5 5 0 -5.76449871305783 LTS-023 chr9 36840624 37493588 652965 * c(EBLN3P, MIR4540, MIR4476, PAX5, POLR1E, ZCCHC7, GRHPR, ZBTB5) 0.321676211993792 9 0.0722088021719728 1.09010839833199 386 0.268574309305893 6 4 2 -7.14267053673016 LTS-023 chr9 37493589 37498137 4549 * POLR1E 0 1 NA 1.21201673703291 17 1.3777746149882 5 5 0 -5.76441015908459 LTS-023 chr9 37498138 37780558 282421 * c(TRMT10B, FRMPD1, FBXO10, TOMM5, EXOSC3, POLR1E) 0.193245616808147 9 0.160304224661874 1.11617902344484 383 0.631762612282163 5 4 1 -6.74694740592654 LTS-023 chr9 37780559 37782111 1553 * EXOSC3 0.31 1 NA 1.03322381709722 9 0.159898231523818 4 4 0 -5.76452416991234 LTS-023 chr9 37782112 38424462 642351 * c(ALDH1B1, IGFBPL1, EXOSC3, SHB, DCAF10, SLC25A51) 0.355125160116973 14 0.0382364678353986 1.1092797039818 291 0.305642756899883 5 3 2 -7.02283563352414 LTS-023 chr9 38424463 38526625 102163 * character(0) NA 0 NA 1.278 1 NA NA NA NA NA LTS-023 chr9 38526626 43816661 5290036 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.386730488995336 14 0.159693800412257 1.37123732637412 311 0.558710136452744 6 3 3 -6.75764620860405 LTS-023 chr9 43816662 44175697 359036 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.31331696002267 46 0.907958697905059 5 NA NA -5.76627065204242 LTS-023 chr9 65602571 66457127 854557 * LOC286297 0.391 1 NA 0.946992009283385 3 0.361021236679137 4 4 0 -5.76823530999443 LTS-023 chr9 66457128 74967637 8510510 * c(FRG1HP, FAM27B, LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf57, C9orf85, C9orf135, TMEM252, SMC5, TMEM2, FXN, MAMDC2, LOC286297, FOXD4L3, APBA1, AQP7P1, PTAR1, MIR204, LOC440896, PTGER4P2-CDK2AP2P2, C9orf135-AS1, ABHD17B, PGM5, PRKACG, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, KLF9, ANKRD20A4, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.305912660826158 83 0.149502280333313 1.00276476690885 2280 0.332773709292699 4 3 1 -6.80850924081764 LTS-023 chr9 74967638 74968558 921 * ZFAND5 0 1 NA 1.02133747493958 17 0.153066522447326 4 4 0 -5.76445654869305 LTS-023 chr9 74968559 80034440 5065882 * c(VPS13A-AS1, TMC1, CARNMT1, TRPM6, PRUNE2, ALDH1A1, VPS13A, GCNT1, OSTF1, ANXA1, FOXB2, PCA3, PCSK5, NMRK1, C9orf40, RFK, RORB, RPSAP9, ZFAND5) 0.260135086023575 66 0.16974662868145 1.02184973296077 2397 0.374011622329623 4 3 1 -6.77700520914416 LTS-023 chr9 80034441 80263100 228660 * GNA14 0.432 1 NA 0.930077421785357 109 0.227483035478501 4 4 0 -5.77082487122849 LTS-023 chr9 80263101 91927233 11664133 * c(MIR3153, MIR4289, GAS1RR, SPIN1, CKS2, CTSL, CTSLP8, NXNL2, RASEF, DAPK1, S1PR3, AGTPBP1, CDK20, FRMD3, GAS1, GNAQ, C9orf47, SPATA31E1, LOC286238, PSAT1, UBQLN1, HNRNPK, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, MIR7-1, IDNK, LOC440173, SPATA31C1, NTRK2, LOC494127, GOLM1, SHC3, KIF27, NAA35, SLC28A3, SPATA31C2, TLE1, TLE4, ZCCHC6, RMI1, GKAP1, ISCA1, NA NA NA NA NA NA NA NA NA LTS-023 CEP78, C9orf64, GNA14) 0.344992586098005 105 0.124592003018321 1.01106287266928 4340 0.329707243750298 4 2 2 -6.90938014605846 LTS-023 NA NA NA NA LTS-023 chr9 91927234 91973062 45829 * c(CKS2, SECISBP2) 0 1 NA 0.956645110354575 103 0.234036116988011 4 4 0 -5.764632585688 LTS-023 chr9 91973063 93650183 1677121 * c(UNQ6494, MIR4290, SEMA4D, GADD45G, MIR4290HG, LINC01501, DIRAS2, SYK, SECISBP2) 0.196734964646528 12 0.198768404903493 1.02943200177646 436 0.584716101046617 4 3 1 -6.81120871698707 LTS-023 chr9 93650184 93658206 8023 * SYK 0.373 1 NA 0.939202376659728 19 0.0959088565875427 4 4 0 -5.76522446519076 LTS-023 chr9 93658207 94538188 879982 * c(LOC100129316, MIR3910-1, MIR3910-2, NFIL3, ROR2, AUH, SYK) 0.399928175964194 8 0.0409869317152257 1.02432620857056 279 0.227887649500185 4 2 2 -6.75938170137142 LTS-023 chr9 94538189 94712058 173870 * ROR2 NA 0 NA 0.55 1 NA NA NA NA NA LTS-023 chr9 94712059 96238578 1526520 * c(SNORA84, LOC100128076, LOC100128361, MIR4670, SPTLC1, ANKRD19P, FAM120AOS, LINC00475, ECM2, SUSD3, FAM120A, BICD2, IARS, CENPP, C9orf129, NINJ1, ROR2, OMD, OGN, ASPN, NOL8, IPPK, WNK2, ZNF484, CARD19, FGD3) 0.387759726598283 38 0.175768722103751 0.816958886249239 1848 0.235609306193595 3 2 1 -6.90579581868309 LTS-023 chr9 96238579 96278460 39882 * FAM120A 0.29 1 NA 0.803275891950818 19 0.385820095638927 3 3 0 -5.76525920987321 LTS-023 chr9 96278461 97078985 800525 * c(MIR4291, PTPDC1, MIRLET7DHG, ZNF169, FAM120A, MIRLET7A1, MIRLET7D, MIRLET7F1, PHF2, BARX1) 0.277757807290662 15 0.211962530381467 0.844850614452012 583 0.330625385831666 4 3 1 -6.82655834604917 LTS-023 chr9 97078986 97079223 238 * character(0) NA 0 NA 1.848 1 NA NA NA NA NA LTS-023 chr9 97079224 97091076 11853 * NUTM2F 0.267575818600459 3 0.109769455375042 1.79332018252705 40 7.90084103892971 19 14 5 -6.73316033049741 LTS-023 chr9 97091077 97091369 293 * character(0) NA 0 NA 0.958 1 NA NA NA NA NA LTS-023 chr9 97091370 97355916 264547 * c(LOC100132077, MFSD14B, FBP2) 0.226103543569772 4 0.270503696832409 0.86448275343577 147 0.539944112029366 4 3 1 -6.75361097296973 LTS-023 chr9 97355917 97418587 62671 * c(FBP1, FBP2) 0.5 1 NA 0.859207031766516 55 0.306132382622675 4 4 0 -5.77102527842445 LTS-023 chr9 97418588 99699601 2281014 * c(LINC00476, LOC100132781, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441454, LOC441455, NUTM2G, PTCH1, C9orf3, CDC14B) 0.400504327454249 47 0.145517139000293 0.838449967467274 1629 0.842761932305293 4 2 2 -6.77816698004987 LTS-023 chr9 99699602 99702920 3319 * NUTM2G NA 0 NA 0.342450475198187 40 0.263075162312296 1 NA NA -5.76531126511097 LTS-023 chr9 99702921 100886825 1183905 * c(CCDC180, LOC100499484, ANP32B, CTSV, TSTD2, FOXE1, TDRD7, LOC286359, GAS2L1P2, NUTM2G, NCBP1, TRMO, NANS, HEMGN, LOC100499484-C9ORF174, TMOD1, CORO2A, XPA, MFSD14C, TRIM14) 0.405198093844316 38 0.12781731495711 0.8662761035682 1412 0.287779172771669 4 2 2 -6.85726246343887 LTS-023 chr9 100886826 100894516 7691 * CORO2A 0.016 1 NA 0.820011372677165 37 0.389756615362997 3 3 0 -5.76467453258673 LTS-023 chr9 100894517 101052750 158234 * c(TBC1D2, CORO2A, GABBR2) NA 0 NA 0.905655389013078 177 0.249314593306412 4 NA NA -5.77317883818992 LTS-023 chr9 101052751 101052866 116 * GABBR2 NA 0 NA 0.575 1 NA NA NA NA NA LTS-023 chr9 101052867 101498445 445579 * c(ANKS6, GABBR2) 0.206050173058238 11 0.232595552212614 0.817612904021987 211 0.779915026272621 4 3 1 -6.78535808681717 LTS-023 chr9 101498446 101498609 164 * ANKS6 0.456 1 NA 0.899281216964463 5 1.07588252146784 4 4 0 -5.7644107151302 LTS-023 chr9 101498610 103236026 1737417 * c(MSANTD3-TMEFF1, NAMA, SEC61B, COL15A1, ANKS6, ERP44, INVS, STX17-AS1, TEX10, STX17, TGFBR1, GALNT12, NR4A3, ALG2, TMEFF1, MSANTD3) 0.398893170052778 19 0.148496559118976 0.811746923588891 1224 0.231747836104209 3 2 1 -6.95602486819242 LTS-023 chr9 103236027 103260967 24941 * c(MSANTD3-TMEFF1, TMEFF1) NA 0 NA 1.074 1 NA NA NA NA NA LTS-023 chr9 103260968 107645244 4384277 * c(MSANTD3-TMEFF1, SMC2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, ALDOB, NIPSNAP3A, OR13C9, OR13D1, NA, MURC, OR13C2, MRPL50, PLPPR1, NIPSNAP3B, PPP3R2, RNF20, BAAT, ZNF189, TMEM246, TMEFF1) 0.406811673321776 53 0.139161825900994 0.892980969953252 1767 0.284138741847086 4 2 2 -6.98869467054668 LTS-023 chr9 107645245 108154554 509310 * c(ABCA1, SLC44A1) 0 1 NA 0.833113273760486 178 0.210908720575763 3 3 0 -5.84516409796471 LTS-023 chr9 108154555 108536904 382350 * c(FKTN, SLC44A1, TMEM38B, TAL2, FSD1L) 0.158945317874494 9 0.20681822399822 0.937167481773593 596 0.255050312885706 4 3 1 -6.89317168697172 LTS-023 chr9 108536905 108537777 873 * TMEM38B 0.436 1 NA 1.02457330664334 20 0.210683717803176 4 4 0 -5.76443678322421 LTS-023 chr9 108537778 109773145 1235368 * c(MIR548Q, TMEM38B, ZNF462) 0.39643119369849 6 0.187846124971123 0.873591033930155 212 0.221206925299393 4 2 2 -6.91685840873066 LTS-023 chr9 109773146 109773189 44 * c(MIR548Q, ZNF462) NA 0 NA 1.15 1 NA NA NA NA NA LTS-023 chr9 109773190 109879949 106760 * c(MIR548Q, ZNF462) NA 0 NA 1.4463116298291 52 0.440736809380937 6 NA NA -5.76442370317267 LTS-023 chr9 109879950 111745595 1865646 * c(ACTL7B, ACTL7A, FAM206A, RAD23B, IKBKAP, CTNNAL1, KLF4) 0.314206727899504 19 0.212704432108493 0.871813928928997 608 0.356929103078687 4 3 1 -6.87673523683299 LTS-023 chr9 111745596 111746599 1004 * CTNNAL1 NA 0 NA 1.188 1 NA NA NA NA NA LTS-023 chr9 111746600 115949523 4202924 * c(FAM225B, MIR3134, MIR4668, AKAP2, PALM2, SLC31A2, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, PTGR1, FKBP15, KIAA0368, TMEM245, FRRS1L, TXNDC8, OR2K2, GNG10, FAM225A, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, DNAJC25, DNAJC25-GNG10, PTPN3, SLC46A2, INIP, SUSD1, LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, HSDL2, CTNNAL1, PTBP3) 0.299248407480184 113 0.134500131591869 1.21379067939554 4029 2.14402606951754 7 5 2 -6.78924364096731 LTS-023 chr9 115949524 115950670 1147 * FKBP15 0 1 NA 1.33673306585076 19 0.384391156770689 6 6 0 -5.76443450969222 LTS-023 chr9 115950671 116837333 886663 * c(WDR31, ZNF618, SLC31A1, RNF183, ALAD, FKBP15, CDC26, C9orf43, AMBP, POLE3, BSPRY, RGS3, HDHD3, PRPF4) 0.225357715680682 32 0.182513098844987 1.17142302245202 1093 0.42289573612635 5 4 1 -6.73752293997543 LTS-023 chr9 116837334 116925108 87775 * c(KIF12, AMBP, COL27A1) 0.336 1 NA 1.16147536556668 119 0.344186381491753 5 5 0 -5.7650680501978 LTS-023 chr9 116925109 117074810 149702 * c(MIR455, COL27A1) 0.337926278366396 26 0.0782372427546252 1.19509476327362 387 0.337295386110252 6 4 2 -6.76044014935837 LTS-023 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.6 1 NA NA NA NA NA LTS-023 chr9 117085363 117089674 4312 * ORM1 0.205 1 NA 0.386760390872349 39 0.289676514634694 2 2 0 -5.76700320040042 LTS-023 chr9 117089675 117089773 99 * ORM1 NA 0 NA 0.595 1 NA NA NA NA NA LTS-023 chr9 117089774 117097127 7354 * c(ORM1, ORM2, AKNA) 0.436227170152756 3 0.0464793861118382 0.5172921846183 74 0.520644259033952 2 1 1 -7.13802133329933 LTS-023 chr9 117097128 117097248 121 * AKNA NA 0 NA 1.057 1 NA NA NA NA NA LTS-023 chr9 117097249 117267285 170037 * c(WHRN, AKNA) 0.375071130232609 12 0.0642641329816157 1.21719169758551 332 0.32235465375128 5 3 2 -6.73799343110275 LTS-023 chr9 117267286 117408120 140835 * c(TMEM268, WHRN, ATP6V1G1) 0 1 NA 1.15081308065747 123 0.277228847248183 5 5 0 -5.76691009715915 LTS-023 chr9 117408121 118997802 1589682 * c(LOC100505478, TMEM268, TNC, DEC1, PAPPA, LINC00474, TNFSF8, TNFSF15) 0.17423488133674 15 0.178431205897666 1.22175205187001 487 0.515202328178253 5 4 1 -6.76514666785414 LTS-023 chr9 118997803 119130030 132228 * PAPPA 0.368 1 NA 1.35729266524339 59 0.261642573663022 6 6 0 -5.76818764358411 LTS-023 chr9 119130031 123171636 4041606 * c(SNORA70C, ASTN2-AS1, BRINP1, TRIM32, ASTN2, MIR147A, PAPPA, CDK5RAP2, TLR4) 0.260904079740034 18 0.157808697375399 1.27230016925855 685 0.444109173261729 5 4 1 -6.81666355131339 LTS-023 chr9 123171637 125438062 2266426 * c(LOC100288842, MIR4478, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, MEGF9, STOM, PSMD5-AS1, MORN5, PHF19, FBXW2, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GSN, OR1J1, OR1B1, NDUFA8, RAB14, CDK5RAP2, PSMD5, PTGS1, TRAF1, C5, MRRF, RBM18) 0.343692918401191 71 0.0941889790936083 1.18466052266401 2604 0.435083500529973 5 3 2 -6.82763059574678 LTS-023 chr9 125438063 125438067 5 * OR1L3 0 1 NA 11.299 1 NA NA NA NA NA LTS-023 chr9 125438068 127089775 1651708 * c(ZBTB6, NEK6, RABGAP1, OR1L4, OR1L3, GPR21, CRB2, OR1L6, OR5C1, OR1K1, PDCL, RC3H2, STRBP, ZBTB26, DENND1A, SNORD90, MIR601, MIR600HG, LHX2) 0.272905523954075 29 0.159752147930702 1.17555144362333 1512 0.398144148607481 5 4 1 -6.81445308085098 LTS-023 chr9 127089776 127146876 57101 * c(LOC100129034, NEK6, PSMB7) 0 1 NA 1.13719454387613 81 0.391690910597175 5 5 0 -5.76520321362754 LTS-023 chr9 127146877 128728787 1581911 * c(MIR181A2HG, RABEPK, RPL35, OLFML2A, NR5A1, GAPVD1, NR6A1, GOLGA1, SCAI, HSPA5, ADGRD2, WDR38, MIR181A2, MIR181B2, PBX3, PPP6C, PSMB7, MAPKAP1, ARPC5L) 0.013470282068479 22 0.0720618421281963 1.14642838759588 1660 0.550120072924956 5 5 0 -6.75536683798085 LTS-023 chr9 128728788 129246177 517390 * c(PBX3, NRON, MVB12B) 0.38 1 NA 1.2186320974594 74 0.296929200658386 5 5 0 -5.76473231589264 LTS-023 chr9 129246178 130474450 1228273 * c(MIR3911, ZBTB43, ANGPTL2, SNORA65, CFAP157, SLC2A8, LMX1B, ZBTB34, RPL12, FAM129B, STXBP1, ZNF79, GARNL3, MVB12B, LRSAM1, RALGPS1) 0.271826394415127 33 0.163779132268634 1.17793109051128 1501 0.377974127674376 5 4 1 -6.80677308015667 LTS-023 chr9 130474451 130474897 447 * CFAP157 0.412 1 NA 1.09121471983155 5 0.508588438720347 5 5 0 -5.76442066128064 LTS-023 chr9 130474898 130925978 451081 * c(SLC25A25-AS1, SH2D3C, MIR3960, MIR4672, CDK9, SLC25A25, PTRH1, PIP5KL1, TTC16, ENG, AK1, NAIF1, FPGS, ST6GALNAC4, TOR2A, CFAP157, ST6GALNAC6, PTGES2-AS1, LCN2, FAM102A, C9orf16, PTGES2, DPM2) 0.378200931533033 39 0.0708361664909311 1.15345369323171 1304 0.340960298034014 5 3 2 -6.73868168587608 LTS-023 chr9 130925979 130925986 8 * C9orf16 NA 0 NA 0.706 1 NA NA NA NA NA LTS-023 chr9 130925987 131095210 169224 * c(MIR3154, DNM1, CIZ1, TRUB2, GOLGA2, SWI5, MIR199B, COQ4, C9orf16) 0.348776816665556 12 0.211728814546086 0.835328295310295 509 0.259844698334309 3 2 1 -6.7527063344941 LTS-023 chr9 131095211 131110892 15682 * c(SLC27A4, COQ4) 0.483 1 NA 0.900704742007344 41 0.230394920760409 4 4 0 -5.76558161900521 LTS-023 chr9 131110893 131339096 228204 * c(MIR219B, SLC27A4, GLE1, MIR219A2, ODF2, CERCAM, SPTAN1, URM1) 0.468469068325232 16 0.0249262244767768 0.818510968950456 520 0.262289069099783 4 2 2 -9.72670614581716 LTS-023 chr9 131339097 131345351 6255 * SPTAN1 0 1 NA 0.779180513422728 45 0.29477113532743 3 3 0 -5.76448713893549 LTS-023 chr9 131345352 131492663 147312 * c(LOC100506100, ZER1, PKN3, SET, SPTAN1, ZDHHC12, WDR34) 0.273880385235912 15 0.227775411524682 0.84864669614026 536 0.40619028157486 4 3 1 -6.74452927587584 LTS-023 chr9 131492664 131516196 23533 * c(LOC100506100, ZER1) 0.471 1 NA 0.787760068262323 93 0.166536166534205 3 3 0 -5.76584943168351 LTS-023 chr9 131516197 131679892 163696 * c(ZER1, ENDOG, SPOUT1, TBC1D13, LRRC8A, KYAT1) 0.428905593163531 19 0.106551280792849 0.824298396116564 403 0.296359411244708 4 2 2 -6.81942590845767 LTS-023 chr9 131679893 131680123 231 * LRRC8A 0.491 1 NA 0.803431425431087 7 0.16598866857481 3 3 0 -5.7644367352187 LTS-023 chr9 131680124 131830658 150535 * c(DOLK, NUP188, PHYHD1, LRRC8A, SH3GLB2, MIGA2) 0.132005628359026 9 0.200125030362965 0.820465756906667 515 0.325688469785143 3 3 0 -6.86727338571972 LTS-023 chr9 131830659 131904850 74192 * c(CRAT, PTPA, DOLPP1, MIGA2) 0.486 1 NA 0.847675082353357 285 0.17838067159315 3 3 0 -5.78670718200798 LTS-023 chr9 131904851 133058082 1153232 * c(LINC00963, USP20, ASB6, TOR1A, FNBP1, NCS1, TOR1B, NTMT1, C9orf50, IER5L, C9orf106, PRRX2, C9orf78, PTPA, GPR107, PTGES) 0.442591489018302 56 0.0429616561145389 0.835168095371626 1169 0.540423864777126 4 2 2 -7.40706088391012 LTS-023 chr9 133058083 133224532 166450 * character(0) 0 1 NA 0.966188580378354 67 0.51815740585373 4 4 0 -5.7644561647284 LTS-023 chr9 133224533 133506125 281593 * c(LOC100272217, ASS1, FUBP3) 0.314476674115492 16 0.218988546123612 0.888533876631568 448 0.327195734351505 4 3 1 -6.77756560692614 LTS-023 chr9 133506126 133553993 47868 * c(PRDM12, FUBP3) 0.441 1 NA 0.948460944467438 69 0.176792859754055 4 4 0 -5.76521742950499 LTS-023 chr9 133553994 134003803 449810 * c(LAMC3, EXOSC2, ABL1, QRFP, PRDM12, NUP214, AIF1L, FIBCD1) 0.413726200211515 26 0.143331997608564 0.831370639659424 681 0.297102562518846 4 2 2 -6.82008530369266 LTS-023 chr9 134003804 134073472 69669 * NUP214 0 1 NA 0.869669780073763 161 0.304095178459166 4 4 0 -5.77052521517816 LTS-023 chr9 134073473 135073877 1000405 * c(POMT1, SNORD62A, FAM78A, RAPGEF1, NUP214, UCK1, NTNG2, PRRC2B, PLPP7, MED27) 0.21269778180108 19 0.23103092119824 0.83405345245797 1032 0.357050203286719 4 3 1 -6.87929768054404 LTS-023 chr9 135073878 135074020 143 * NTNG2 NA 0 NA 0.724512779001659 4 0.2574365617649 3 NA NA -5.76441133184113 LTS-023 chr9 135074021 135102254 28234 * NTNG2 0.108 1 NA 0.365030663401632 3 0.189198308660516 1 1 0 -5.79173960333377 LTS-023 chr9 135102255 135285895 183641 * c(SETX, CFAP77, TTF1, NTNG2) 0.0929189103682708 20 0.0277443213725089 0.463190935592844 463 0.167289899248417 1 1 0 -7.56398466088708 LTS-023 chr9 135285896 135357652 71757 * CFAP77 NA 0 NA 0.815 1 NA NA NA NA NA LTS-023 chr9 135357653 138380006 3022354 * c(RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, CEL, CELP, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, C9orf62, AK8, DBH, STKLD1, SARDH, FCN1, FCN2, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, CFAP77, TMEM8C, LOC401557, BARHL1, REXO4, RALGDS, RPL7A, RXRA, FAM163B, DDX31, SURF1, SURF2, SURF4, NA NA NA NA NA NA NA NA NA LTS-023 MED22, SURF6, TSC1, VAV2, BRD3, GFI1B, GTF3C5, GTF3C4, ADAMTSL2, PPP1R26) 0.0361114587201169 121 0.0237406847035387 0.840688263458756 3814 0.455957899796685 3 3 0 -6.86163230688685 LTS-023 NA NA NA NA LTS-023 chr9 138380007 138391387 11381 * c(C9orf116, PPP1R26) NA 0 NA 0.821475038125323 29 0.0882636416841598 3 NA NA -5.77232399945049 LTS-023 chr9 138391388 138391468 81 * C9orf116 NA 0 NA 1.097 1 NA NA NA NA NA LTS-023 chr9 138391469 138395969 4501 * c(C9orf116, MRPS2) 0.317 1 NA 1.2096984490406 57 0.232369711790056 5 5 0 -5.76441037845996 LTS-023 chr9 138395970 138586309 190340 * c(LINC01502, OBP2A, GLT6D1, LCN9, LCN1, SOHLH1, PAEP, MRPS2) 0.260084623484837 12 0.164910444015698 1.20111593294082 202 0.579714200263792 4 3 1 -6.74804309181035 LTS-023 chr9 138586310 138590133 3824 * SOHLH1 0 1 NA 1.26588475586087 19 1.00997542382236 5 5 0 -5.7644152314656 LTS-023 chr9 138590134 138774676 184543 * c(CAMSAP1, SOHLH1, KCNT1) 0.0936053045098215 10 0.154237335154481 1.18455894085462 402 0.624351860465657 8 7 1 -6.84343239317728 LTS-023 chr9 138774677 138816947 42271 * CAMSAP1 0.272 1 NA 0.960817342448363 15 0.396674533735512 4 4 0 -5.76445508022552 LTS-023 chr9 138816948 139010509 193562 * c(UBAC1, NACC2, C9orf69) 0.254628713976401 12 0.128168922626636 1.23392112318203 274 5.16525755011912 8 6 2 -6.73429784125295 LTS-023 chr9 139010510 139010543 34 * C9orf69 0.311 1 NA 0.356 1 NA NA NA NA NA LTS-023 chr9 139010544 139137731 127188 * c(QSOX2, LHX3, C9orf69) 0.0337604673753125 9 0.118174071230161 1.09930080935929 212 0.694679372297742 4 4 0 -6.73581692908253 LTS-023 chr9 139137732 139255019 117288 * c(GPSM1, DKFZP434A062) 0.38 1 NA 1.14920719707224 150 0.268356179637973 5 5 0 -5.76676413062505 LTS-023 chr9 139255020 139418260 163241 * c(MIR4673, SDCCAG3, C9orf163, PMPCA, NOTCH1, INPP5E, CARD9, SNAPC4, DNLZ, SEC16A) 0.319763667332151 52 0.127825146585277 1.170499939557 1142 0.412316264105439 6 4 2 -6.7660025788313 LTS-023 chr9 139418261 139562643 144383 * c(MIR4674, NOTCH1, EGFL7) 0 1 NA 1.03385849752822 15 0.610648250398121 4 4 0 -5.76515349666075 LTS-023 chr9 139562644 139659003 96360 * c(LOC100128593, AGPAT2, LCN8, FAM69B, LCN6, LCN15, MIR126, LCN10, EGFL7, SNORA17A, SNORA17B, SNHG7) 0.135838273672172 2 0.250315800540038 1.1615101574094 287 0.458324825395634 6 5 1 -6.76501317515815 LTS-023 chr9 139659004 139685725 26722 * character(0) NA 0 NA 0.533 1 NA NA NA NA NA LTS-023 chr9 139685726 139983451 297726 * c(CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR4479, MAN1B1, MAMDC4, ABCA2, FUT7, LCN12, C9orf142, PHPT1, C9orf172, LCNL1, C9orf139, FBXW5, RABL6, NPDC1, PTGDS, TRAF2, C8G, CCDC183, TMEM141, EDF1, SAPCD2, CLIC3, UAP1L1, ENTPD2) 0.0616977253901082 28 0.0531729234513186 0.448040828076612 1594 0.15646378103871 2 2 0 -6.88552774127489 LTS-023 chr9 139983452 139996619 13168 * MAN1B1 0.386 1 NA 0.436941126950034 35 0.109297051095404 2 2 0 -5.78304165295221 LTS-023 chr9 139996620 139997791 1172 * MAN1B1 0.223066290920137 9 0.0797041404194287 0.707632779107466 35 0.232602069399813 5 4 1 -6.74244471152346 LTS-023 chr9 139997792 140001848 4057 * MAN1B1 0.08 1 NA 0.505786495304998 21 0.163668407516685 2 2 0 -5.76445327667993 LTS-023 chr9 140001849 140997146 995298 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, MAN1B1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.0641403715597167 68 0.0476501738649408 0.435570596261433 2218 0.161629399554167 2 2 0 -7.3554518548408 LTS-023 chr9 140997147 141008876 11730 * CACNA1B 0.102 1 NA 0.394246410020137 15 0.107861595619218 2 2 0 -5.80848585132401 LTS-023 chr9 141008877 141071755 62879 * c(TUBBP5, CACNA1B) 0.159614220694051 9 0.190924577895159 0.447646883294072 111 0.199972700839592 2 2 0 -6.92413982270343 LTS-023 chr9 141071756 141071759 4 * TUBBP5 NA 0 NA 0.534 1 NA NA NA NA NA LTS-023 chr10 94832 95220 389 * TUBB8 0.325 1 NA 0.7080819963426 3 0.220529665426975 3 3 0 -5.76442381312663 LTS-023 chr10 95221 5139815 5044595 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, AKR1C1, AKR1C2, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, AKR1C6P, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, AKR1C3, IDI2) 0.403610611543208 88 0.14227142982339 0.7892546224911 1998 0.349191690532345 3 2 1 -6.92350428164635 LTS-023 chr10 5139816 5144249 4434 * AKR1C3 0 1 NA 0.846329874177203 13 0.295998549026243 3 3 0 -5.76488362945799 LTS-023 chr10 5144250 5568242 423993 * c(NET1, AKR1C4, UCN3, AKR1C8P, CALML5, TUBAL3, CALML3, AKR1C3) 0.362855210775178 7 0.170922845306352 0.792348565411275 352 0.307079109522263 3 2 1 -6.75272772977901 LTS-023 chr10 5568243 5680834 112592 * ASB13 NA 0 NA 1.192 1 NA NA NA NA NA LTS-023 chr10 5680835 8056972 2376138 * c(MIR3155A, LINC00707, MIR3155B, KIN, GDI2, IL2RA, IL15RA, ITIH2, LOC399715, PRKCQ-AS1, ATP5C1, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, ITIH5, TAF3, FBXO18, RBM17) 0.314254985375895 57 0.0873069298509574 1.06684184784502 1904 0.313725145745353 4 3 1 -7.0275213225152 LTS-023 chr10 8056973 9450267 1393295 * c(GATA3, GATA3-AS1, TAF3) NA 0 NA 1.1105073631822 143 0.477038855476774 5 NA NA -5.78982076640409 LTS-023 chr10 11047272 11316909 269638 * c(CELF2, CELF2-AS2) 0.181 1 NA 1.81418039588038 43 0.738645937237867 8 8 0 -5.76500279328129 LTS-023 chr10 11316910 13487847 2170938 * c(MIR4480, OPTN, CELF2, NUDT5, PROSER2-AS1, UCMA, BEND7, SEPHS1, PROSER2, UPF2, NA, PHYH, SEC61A2, MCM10, DHTKD1, CAMK1D, ECHDC3, CCDC3, CDC123, USP6NL) 0.154026357761163 45 0.111851646876972 1.83959662901861 1867 0.676441209278185 8 7 1 -6.74891198397716 LTS-023 chr10 13487848 13633882 146035 * c(BEND7, PRPF18) 0.227 1 NA 1.87005258606623 79 0.31834201333687 8 8 0 -5.76458882188769 LTS-023 chr10 13633883 16553374 2919492 * c(PPIAP30, MIR1265, RPP38, C10orf111, FAM171A1, ACBD7, CDNF, HSPA14, OLAH, FRMD4A, DCLRE1C, MEIG1, SUV39H2, FAM188A, FAM107B, ITGA8, PRPF18, PTER, NMT2) 0.233579873943674 38 0.0783398512264666 1.79905383284196 1436 0.47649003107584 8 6 2 -6.81331935777504 LTS-023 chr10 16553375 16553718 344 * PTER 0.155 1 NA 2.18418000226443 7 0.554508104625386 9 9 0 -5.76441060292373 LTS-023 chr10 16553719 16563505 9787 * c(C1QL3, PTER) 0.172855991457674 4 0.0278373250630636 2.00997552006033 92 1.02603028289802 12 10 2 -6.73607176023587 LTS-023 chr10 16563506 17891604 1328099 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, NA, RSU1, TMEM236, VIM, STAM, CUBN, HACD1) 0.171136785556765 18 0.0833665228025195 1.5799562343474 956 0.516702796030385 7 6 1 -6.76068623487464 LTS-023 chr10 17891605 18060381 168777 * c(MRC1, NA, TMEM236) NA 0 NA 0.911648170133877 39 0.832686550892824 4 NA NA -5.76511001732966 LTS-023 chr10 18060382 18085856 25475 * c(MRC1, NA, TMEM236) NA 0 NA 1.838 1 NA NA NA NA NA LTS-023 chr10 18085857 28966494 10880638 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, NA, GPR158, ARHGAP21, NA NA NA NA NA NA NA NA NA LTS-023 DNAJC1, LINC00264, BMI1, TMEM236, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.164439177881277 128 0.0876192182064767 1.82914792070735 5149 0.629653494427958 8 7 1 -6.81136443626957 LTS-023 NA NA NA NA LTS-023 chr10 28966495 28971876 5382 * BAMBI NA 0 NA 1.98043035143553 45 0.853102002853543 8 NA NA -5.76441832629039 LTS-023 chr10 28971877 29136117 164241 * LINC00837 NA 0 NA 1.395 1 NA NA NA NA NA LTS-023 chr10 29136118 29170562 34445 * character(0) 0.014 1 NA 1.37191577532178 43 0.32166695700559 6 6 0 -5.76484000991391 LTS-023 chr10 29170563 32345300 3174738 * c(MIR938, LYZL2, MAP3K8, ZNF438, ZEB1-AS1, KIF5B, PTCHD3P1, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, LYZL1, ARHGAP12) 0.0850989389985946 55 0.0813490339209097 1.38605663852576 1239 1.46730438219643 9 8 1 -7.01643572757014 LTS-023 chr10 32345301 32345345 45 * KIF5B 0.134 1 NA 0.114 1 NA NA NA NA NA LTS-023 chr10 32345346 35626140 3280795 * c(LINC00838, CREM, CCNY, NA, ITGB1, KIF5B, PARD3, CCDC7, EPC1, CUL2, NRP1) 0.0983960106090956 50 0.0568778461947629 0.788964872721533 1160 0.289621733274976 3 3 0 -7.39354992929377 LTS-023 chr10 35626141 35772288 146148 * CCNY NA 0 NA 1.407 1 NA NA NA NA NA LTS-023 chr10 35772289 35860842 88554 * CCNY 0 1 NA 1.60553030898811 91 0.315046225652561 7 7 0 -5.76516804566131 LTS-023 chr10 35860843 35929131 68289 * c(GJD4, CCNY, FZD8) 0.469 1 NA 1.45451259660627 79 0.255732130856397 6 6 0 -5.76450138794627 LTS-023 chr10 35929132 36811018 881887 * FZD8 0.388620846221929 2 0.000707106781186548 1.52925698745277 35 1.09528493050512 19 11 8 -7.23812006926934 LTS-023 chr10 36811019 36811021 3 * character(0) NA 0 NA 0.244 1 NA NA NA NA NA LTS-023 chr10 36811022 38645403 1834382 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.190660599436595 17 0.140809947008266 1.00322733109094 610 0.639416836684879 5 4 1 -6.84201149777465 LTS-023 chr10 38645404 38740384 94981 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.03988515015738 55 0.186585366494532 4 NA NA -5.77077355929426 LTS-023 chr10 42379865 42941686 561822 * LOC441666 0.318556186156993 4 0.0809253771487453 0.716435958813884 41 0.835509185335797 3 2 1 -6.77732145380248 LTS-023 chr10 42941687 43087295 145609 * c(ZNF37BP, ZNF33B, LINC00839) 0.0747674503465226 5 0.022561028345357 0.744933833929014 93 0.378046722267134 2 2 0 -7.20161461034173 LTS-023 chr10 43087296 43087763 468 * ZNF33B 0.029 1 NA 0.653740070927499 11 0.225955506481013 3 3 0 -5.7645076591694 LTS-023 chr10 43087764 46281287 3193524 * c(C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, ZFAND4, BMS1) 0.036885817827519 49 0.0285347234466513 0.742875497999691 1668 0.295822129259599 3 3 0 -6.73711700591633 LTS-023 chr10 46281288 46550852 269565 * c(AGAP4, FAM21C, PTPN20, NA) NA 0 NA 9.878 1 NA NA NA NA NA LTS-023 chr10 46550853 46965018 414166 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15) 0.0255005470151781 2 0.0113137084989848 1.1607007920078 72 1.29834180442553 5 5 0 -6.73793270486875 LTS-023 chr10 46965019 46965727 709 * c(PTPN20, GLUD1P7, NA, NA, SYT15) 0.366 1 NA 1.12689103132207 3 0.225186589298741 5 5 0 -5.76444967275401 LTS-023 chr10 46965728 47416860 451133 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.251408531713936 27 0.125286520626571 1.20601887651285 156 0.67336673131267 4 3 1 -6.76654356448314 LTS-023 chr10 47416861 47420602 3742 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 1.50761929161412 3 1.31693596402154 6 NA NA -5.76441310782106 LTS-023 chr10 47420603 47658503 237901 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 0.795 1 NA NA NA NA NA LTS-023 chr10 47658504 47667271 8768 * c(PTPN20, GLUD1P7, NA, NA) 0 1 NA 0.77258336413084 17 0.621862418583933 3 3 0 -5.76442560485911 LTS-023 chr10 47667272 47903235 235964 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0 1 NA 0.804923016068511 68 0.61961813748774 3 3 0 -5.76646886149003 LTS-023 chr10 47903236 47915827 12592 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.019 1 NA NA NA NA NA LTS-023 chr10 47915828 48370491 454664 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.1244673389761 44 0.16487035075519 0 NA NA -9.11290428207087 LTS-023 chr10 48370492 48429422 58931 * c(ZNF488, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.0355294672367541 15 0.0380878683347561 0.808317386381564 257 0.471868817312036 3 3 0 -6.73912144984583 LTS-023 chr10 48429423 48429521 99 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.762 1 NA NA NA NA NA LTS-023 chr10 48429522 48739488 309967 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) 0.053 1 NA 0.27805093986367 38 0.346281921668657 1 1 0 -5.76593067252604 LTS-023 chr10 49364631 49667690 303060 * c(FRMPD2, NA, MAPK8, ARHGAP22, FRMPD2B) 0.0231186106971863 6 0.0364014651719772 0.822491083806006 338 0.472249607422504 4 4 0 -6.77883553718209 LTS-023 chr10 49667691 49667713 23 * c(NA, ARHGAP22) 0.032 1 NA 2.176 1 NA NA NA NA NA LTS-023 chr10 49667714 49701703 33990 * c(NA, ARHGAP22) 0.0434681324977197 7 0.0119980157089571 1.22830850610039 46 0.75150823324677 3 3 0 -6.8224658867195 LTS-023 chr10 49701704 49732037 30334 * c(NA, ARHGAP22) NA 0 NA 0.884 1 NA NA NA NA NA LTS-023 chr10 49732038 51050191 1318154 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, LRRC18, NA, OGDHL, WDFY4, ARHGAP22, DRGX, SLC18A3, PARG) 0.0336668901146686 45 0.0321167063735189 0.735288948509729 1548 0.376110360062071 3 3 0 -6.75118386752932 LTS-023 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.320403204313738 39 0.347434048926665 1 NA NA -5.785039252709 LTS-023 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.707 1 NA NA NA NA NA LTS-023 chr10 51537127 51549545 12419 * c(NA, PARG) 0.04 1 NA 0.896771467304137 17 0.623090058168348 4 4 0 -5.76455102195407 LTS-023 chr10 51549546 51620317 70772 * c(TIMM23, MSMB, NA, NCOA4, PARG) 0.458 1 NA 0.751460104222881 143 0.262626318891257 3 3 0 -5.76443231561493 LTS-023 chr10 51620318 51827843 207526 * c(TIMM23, NA, FAM21A, AGAP6, NA, PARG) 0.421228683111222 9 0.127971785084751 0.776849559053022 46 0.331163028141321 4 2 2 -6.81404275703155 LTS-023 chr10 51827844 52002980 175137 * c(FAM21A, NA, ASAH2) 0.02 1 NA 1.28905645115039 25 1.22992730408481 5 5 0 -5.76471039973256 LTS-023 chr10 52002981 63168540 11165560 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.0488483723721199 82 0.0262272542367622 0.779279512177203 2897 0.30481259101965 3 3 0 -6.94237383071242 LTS-023 chr10 63168541 67680384 4511844 * c(MIR1296, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, REEP3, JMJD1C, ZNF365, CTNNA3, NRBF2, ANXA2P3, ARID5B, ADO, JMJD1C-AS1) 0.0512797363089755 28 0.0772734442430592 0.722323297841319 1340 0.261568170645091 3 3 0 -6.79222839965258 LTS-023 chr10 67680385 67726282 45898 * CTNNA3 NA 0 NA 0.315 1 NA NA NA NA NA LTS-023 chr10 67726283 68979343 1253061 * c(CTNNA3, LRRTM3) 0.0901840942845368 2 0.0289913780286484 0.399029608037247 132 0.101630784083472 2 2 0 -10.3646504874553 LTS-023 chr10 68979344 68979408 65 * CTNNA3 NA 0 NA 0.627 1 NA NA NA NA NA LTS-023 chr10 68979409 71176335 2196927 * c(DNA2, STOX1, ATOH7, SIRT1, HERC4, KIF1BP, CTNNA3, HK1, HNRNPH3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.0389171030260656 50 0.035255591537994 0.706356375141886 2333 0.235966952943876 3 3 0 -6.80610476268636 LTS-023 chr10 71176336 71176618 283 * TACR2 NA 0 NA 0.524461767032705 7 0.189116240394505 2 NA NA -5.76441112468156 LTS-023 chr10 71176619 71211226 34608 * c(TSPAN15, TACR2) NA 0 NA 1.427 1 NA NA NA NA NA LTS-023 chr10 71211227 71243393 32167 * TSPAN15 0.358 1 NA 1.19619476913284 11 0.288604258772836 5 5 0 -5.76442897609131 LTS-023 chr10 71243394 73575454 2332061 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, SAR1A, CDH23, NPFFR1, C10orf54, UNC5B-AS1, AIFM2, SGPL1) 0.28841448282839 81 0.147289505589469 1.10073131370898 2571 0.366128368287883 4 3 1 -6.89290313641231 LTS-023 chr10 73575455 73575459 5 * CDH23 NA 0 NA 1.029 1 NA NA NA NA NA LTS-023 chr10 73575460 73862032 286573 * c(ANAPC16, ASCC1, PSAP, CDH23, CHST3, SPOCK2) 0.36791990751656 17 0.0572821320051796 1.00710117527869 428 0.271535170442899 5 3 2 -6.83909150388582 LTS-023 chr10 73862033 73956743 94711 * c(ANAPC16, ASCC1) 0 1 NA 0.912238288933376 33 0.315590619939724 4 4 0 -5.76709254192749 LTS-023 chr10 73956744 74326600 369857 * c(MIR1256, MICU1, ANAPC16, ASCC1, DDIT4, DNAJB12) 0.160270939460989 5 0.166247706751101 0.992578172297948 275 0.256121087508408 5 4 1 -6.92475264904305 LTS-023 chr10 74326601 74451832 125232 * c(MIR1256, MICU1) NA 0 NA 1.892 1 NA NA NA NA NA LTS-023 chr10 74451833 75105026 653194 * c(MIR4676, ECD, CFAP70, OIT3, DNAJC9, NUDT13, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PLA2G12B, MCU) 0.109216236006323 20 0.123122061813727 1.34052474648962 819 0.610004228567696 7 6 1 -6.8689943463096 LTS-023 chr10 75105027 75108146 3120 * CFAP70 0.225 1 NA 1.96389675421591 7 0.348542885248204 8 8 0 -5.76442856359953 LTS-023 chr10 75108147 76158366 1050220 * c(CHCHD1, MSS51, CFAP70, ADK, USP54, FUT11, ZSWIM8, AP3M1, GLUD1P3, ANXA7, C10orf55, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.238244959643014 27 0.123603066097561 1.29127951350985 1680 0.366684828226614 5 4 1 -6.77492162911923 LTS-023 chr10 76158367 76284954 126588 * ADK NA 0 NA 2.204 1 NA NA NA NA NA LTS-023 chr10 76284955 82405978 6121024 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, PPIF, POLR3A, COMTD1, ADK, SAMD8, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, KAT6B, ZNF503-AS1, ZMIZ1-AS1, ANXA11, DUPD1, KCNMA1, SH2D4B, LINC00595, MAT1A, LINC00857, DUSP13, ZMIZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, VDAC2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, DLG5) 0.203560162620774 104 0.0918986797785126 1.63275776797489 3042 0.588429966384768 7 6 1 -6.89255236888254 LTS-023 chr10 82405979 83637901 1231923 * c(NRG3, SH2D4B) NA 0 NA 2.53345273978233 42 0.827727569755212 11 NA NA -5.76488611404674 LTS-023 chr10 83637902 87359943 3722042 * c(GRID1-AS1, NRG3, LINC00858, LRIT1, GHITM, GRID1, LRIT2, C10orf99, CCSER2, RGR, CDHR1) 0.201282232120552 31 0.11921263193514 1.41648633296934 748 0.909036448042705 6 5 1 -6.75077293715005 LTS-023 chr10 87359944 87360693 750 * c(GRID1-AS1, GRID1) 0.291 1 NA 1.46402267505927 17 0.461971200082735 6 6 0 -5.76441086204437 LTS-023 chr10 87360694 89263804 1903111 * c(GRID1-AS1, MIR4678, ADIRF, LDB3, AGAP11, WAPL, GLUD1, GRID1, LINC00863, MIR346, FAM35A, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, OPN4) 0.297034298982737 27 0.0271043146868515 1.33580651766779 948 0.406337397792655 7 5 2 -7.07075011836811 LTS-023 chr10 89263805 89264590 786 * MINPP1 NA 0 NA 1.005 1 NA NA NA NA NA LTS-023 chr10 89264591 89269490 4900 * MINPP1 0.236689580725065 3 0.236572046813087 1.04916895384307 27 0.389404754308499 5 4 1 -6.73831862245072 LTS-023 chr10 89269491 89463460 193970 * c(PAPSS2, MINPP1) 0.465 1 NA 0.966276975662562 53 0.248835596019046 4 4 0 -5.76463890791534 LTS-023 chr10 89463461 90425327 961867 * c(KLLN, LIPJ, CFL1P1, RNLS, PTEN, ATAD1, LIPF, PAPSS2) 0.414270290993313 12 0.0379876375425033 0.936089658386156 650 0.240019982717749 4 2 2 -6.87677776595341 LTS-023 chr10 90425328 90433345 8018 * LIPF 0.324 1 NA 0.913360885834486 29 0.298431313317609 4 4 0 -5.76465513085961 LTS-023 chr10 90433346 90775542 342197 * c(FAS-AS1, ANKRD22, LIPM, FAS, STAMBPL1, ACTA2, LIPK, LIPN, LIPF) 0.235307792329509 11 0.197435282837417 0.924699678711623 460 0.366703417492246 4 3 1 -6.75127534646585 LTS-023 chr10 90775543 90823035 47493 * character(0) NA 0 NA 0.233 1 NA NA NA NA NA LTS-023 chr10 90823036 90973993 150958 * c(MIR4679-1, MIR4679-2, LIPA, CH25H) 0 1 NA 0.820902081621727 45 0.200730426294581 3 3 0 -5.78437044447725 LTS-023 chr10 90973994 90983629 9636 * LIPA 0.439 1 NA 0.705330308484672 33 0.110147249927843 3 3 0 -5.76597689061521 LTS-023 chr10 90983630 93619383 2635754 * c(HECTD2-AS1, LINC00502, RPP30, NUDT9P1, HECTD2, IFIT5, ANKRD1, FLJ37201, HTR7, IFIT2, IFIT1, IFIT3, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, PPP1R3C, LINC00865, TNKS2, PCGF5, KIF20B) 0.380933947916246 55 0.164267872716286 0.734893707392436 1559 0.219549370817891 3 2 1 -6.77801257988024 LTS-023 chr10 93619384 93621709 2326 * TNKS2 NA 0 NA 1.113 1 NA NA NA NA NA LTS-023 chr10 93621710 93625087 3378 * TNKS2 0.347 1 NA 1.12021309563387 56 0.235770110764427 5 5 0 -5.76461322097535 LTS-023 chr10 93625088 93666381 41294 * c(FGFBP3, TNKS2) 0.474 1 NA 0.273 1 NA NA NA NA NA LTS-023 chr10 93666382 96098373 2431992 * c(PLCE1-AS1, MARK2P9, FRA10AC1, FGFBP3, CYP26A1, SLC35G1, CPEB3, MYOF, PIPSL, HHEX, FFAR4, CYP26C1, IDE, KIF11, PLCE1, PDE6C, EXOC6, MARCH5, CEP55, RBP4, NOC3L, BTAF1, LGI1) 0.395001062342723 64 0.153131588779529 0.746235521560198 2428 0.27424722153469 3 2 1 -6.80834175684247 LTS-023 chr10 96098374 96114842 16469 * NOC3L 0 1 NA 0.707495686182992 61 0.163970157554068 3 3 0 -5.76549289055477 LTS-023 chr10 96114843 96540468 425626 * c(CYP2C19, CYP2C18, TBC1D12, HELLS, NOC3L) 0.196102863187037 7 0.239669117147549 0.746816697386383 372 0.223153138474513 3 2 1 -6.94303533359701 LTS-023 chr10 96540469 96541555 1087 * CYP2C19 NA 0 NA 1.077 1 NA NA NA NA NA LTS-023 chr10 96541556 96749309 207754 * c(CYP2C19, CYP2C9) 0 2 0 1.13634472238041 78 0.611154885883108 0 0 0 -Inf LTS-023 chr10 96749310 96827150 77841 * CYP2C8 0.404 1 NA 1.10001909589479 43 0.245580010441076 5 5 0 -5.77107686916404 LTS-023 chr10 96827151 97629449 802299 * c(SORBS1, ACSM6, CYP2C8, TCTN3, ALDH18A1, ENTPD1-AS1, PDLIM1, ENTPD1) 0.295500355841784 13 0.163523698588309 0.995894663639857 786 0.251617347782682 4 3 1 -6.75648886941315 LTS-023 chr10 97629450 97698338 68889 * c(C10orf131, ENTPD1-AS1, ENTPD1) 0.375 1 NA 0.992282996421184 25 0.223876997478526 4 4 0 -5.76460889608249 LTS-023 chr10 97698339 98716087 1017749 * c(C10orf131, MIR3157, PIK3AP1, DNTT, BLNK, CC2D2B, CCNJ, TM9SF3, TLL2, ENTPD1-AS1, LCOR, OPALIN, ZNF518A) 0.357827703411952 36 0.0418249944259429 1.05539471202035 1137 0.264983476448091 5 3 2 -7.06272230151295 LTS-023 chr10 98716088 98742750 26663 * c(C10orf12, LCOR) 0.274 1 NA 1.14428443515231 215 0.305347822379719 5 5 0 -5.76489904929862 LTS-023 chr10 98742751 99240743 497993 * c(FRAT1, SLIT1-AS1, ARHGAP19-SLIT1, RRP12, FRAT2, C10orf12, EXOSC1, PGAM1, MMS19, SLIT1, ZDHHC16, ARHGAP19) 0.213940138056949 22 0.18824247511449 1.04760526942251 1022 0.408566536343117 5 4 1 -6.76876554132578 LTS-023 chr10 99240744 99332488 91745 * c(ANKRD2, MMS19, UBTD1) 0.4 1 NA 1.00403114665686 63 0.256857935396075 4 4 0 -5.76503167258225 LTS-023 chr10 99332489 99474311 141823 * c(MIR5692C2, HOGA1, MORN4, ANKRD2, C10orf62, PI4K2A, AVPI1, MARVELD1) 0.347987400854441 19 0.0380442955126341 1.02352247202153 343 0.259540810382692 3 2 1 -6.8795086191519 LTS-023 chr10 99474312 99520205 45894 * c(ZFYVE27, MARVELD1) 0 1 NA 1.08441141578299 117 0.415668270512811 4 4 0 -5.76614364176781 LTS-023 chr10 99520206 99531503 11298 * c(ZFYVE27, SFRP5) NA 0 NA 0.992272051525694 49 0.218808634512935 4 NA NA -5.76444420968576 LTS-023 chr10 99531504 99610013 78510 * c(GOLGA7B, SFRP5) NA 0 NA 0.628 1 NA NA NA NA NA LTS-023 chr10 99610014 112640794 13030781 * c(TLX1NB, MIR936, DNMBP-AS1, KCNIP2-AS1, MIR1287, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4482, MIR4685, ACTR1A, SMNDC1, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SORCS1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, CYP17A1, NKX2-3, CFAP58, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, DNMBP, CALHM1, DPCD, SEC31B, CNNM1, PDCD4, R3HCC1L, POLL, GOT1, NA NA NA NA NA NA NA NA NA LTS-023 BLOC1S2, RBM20, PDCD4-AS1, KCNIP2, TLX1, HPS1, LBX1-AS1, GOLGA7B, ARL3, MXI1, NDUFB8, NFKB2, PAX2, CALHM2, CUTC, SUFU, PITX3, CNNM2, WBP1L, CRTAC1, CWF19L1, HIF1AN, SLF2, PSD, C10orf2, ENTPD7, AS3MT, MIR146B, SEMA4G, HPSE2, SCD, FBXW4, SNORA12, TAF5, MIR608, MIR609, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, CFAP43, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 PCGF6, LOXL4, LZTS2, MRPL43, PYROXD2, USMG5, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, SMC3, NEURL1, NOLC1, GSTO1, SH3PXD2A, SLK) 0.0402963447865681 194 0.0295999270402189 0.701179555568065 9892 0.248767084774195 3 3 0 -7.20122674836654 LTS-023 NA NA NA NA LTS-023 chr10 112640795 113917085 1276291 * c(MIR4680, ADRA2A, PDCD4, GPAM, RPL13AP6, SHOC2, BBIP1) 0.0382968020526221 7 0.0145928880264457 1.02805415350651 438 0.256142671124319 4 4 0 -6.94846054941807 LTS-023 chr10 113917086 113919874 2789 * GPAM 0 1 NA 0.987756776072212 12 0.996590593275925 4 4 0 -5.76441033671993 LTS-023 chr10 113919875 116853570 2933696 * c(MIR2110, MIR4295, MIR4483, TRUB1, VTI1A, ADRB1, ATRNL1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.0245780070305582 70 0.0387595977561618 1.07032902398836 2663 0.563675475382544 4 4 0 -6.79077596021074 LTS-023 chr10 116853571 120096015 3242445 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, FAM204A, SLC18A2) 0.0203423355447853 41 0.0180782175896716 1.15953539931407 1838 0.396784335397494 5 5 0 -6.78446479335853 LTS-023 chr10 120096016 120352963 256948 * c(PRLHR, FAM204A) NA 0 NA 0.781 1 NA NA NA NA NA LTS-023 chr10 120352964 121652470 1299507 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, INPP5F, PRLHR, GRK5, NANOS1, RGS10, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.0277552112559241 30 0.0201944569611075 1.00343173613061 1233 1.10543231245862 4 4 0 -6.74129219048773 LTS-023 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 1.388 1 NA NA NA NA NA LTS-023 chr10 121657875 125622323 3964449 * c(MIR3941, FAM24B-CUZD1, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, CPXM2, DMBT1, PLPP4, FAM24B, FGFR2, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, WDR11, HTRA1, PLEKHA1, IKZF5, C10orf88, BUB3) 0.0240180041069779 80 0.0206469877044043 1.09756597357235 2439 0.461623711960051 5 5 0 -6.8325842096474 LTS-023 chr10 125622324 125639712 17389 * CPXM2 NA 0 NA 1.618 1 NA NA NA NA NA LTS-023 chr10 125639713 126673998 1034286 * c(CPXM2, FAM175B, NKX1-2, METTL10, OAT, CHST15, ZRANB1, LHPP, FAM53B) 0.0214726802152804 16 0.0152468575997373 1.3981527667913 638 0.49853397980108 6 6 0 -6.73636531619266 LTS-023 chr10 126673999 126677481 3483 * c(CTBP2, ZRANB1) 0.174 1 NA 1.34043494244044 67 0.574826734951355 6 6 0 -5.76444076985624 LTS-023 chr10 126677482 127585179 907698 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS, FANK1) 0.151077618494161 20 0.129477736350796 1.38856966788159 633 0.474214234945886 6 5 1 -6.76792706055291 LTS-023 chr10 127585180 127668317 83138 * c(FANK1-AS1, FANK1) 0.028 1 NA 1.38776309599945 7 3.19700291195482 6 6 0 -5.76441608209827 LTS-023 chr10 127668318 127843933 175616 * c(ADAM12, FANK1) 0.024260790570827 7 0.0149315900342991 1.4749087689764 315 0.567939753355506 5 5 0 -6.74628014784229 LTS-023 chr10 127843934 127967478 123545 * ADAM12 NA 0 NA 1.203 1 NA NA NA NA NA LTS-023 chr10 127967479 134693137 6725659 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2) 0.0269343219040109 111 0.0185535460339545 1.08762902032469 2488 0.573950352946 5 5 0 -6.87338186378914 LTS-023 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.582 1 NA NA NA NA NA LTS-023 chr10 134694406 134884546 190141 * c(LINC01168, CFAP46, ADGRA1) 0.0187356977562604 8 0.0164055739656635 0.553101182553672 174 0.198831637568905 3 3 0 -7.78481722078015 LTS-023 chr10 134884547 134884560 14 * ADGRA1 NA 0 NA 1.305 1 NA NA NA NA NA LTS-023 chr10 134884561 135371380 486820 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.0290378353543889 70 0.0193998143040354 1.10031338381722 1363 0.592240362206823 4 4 0 -6.74643962256657 LTS-023 chr10 135371381 135371684 304 * c(CYP2E1, SYCE1) 0 1 NA 1.43967005763804 5 2.71230276702289 6 6 0 -5.7644101347326 LTS-023 chr10 135371685 135438977 67293 * c(CYP2E1, SPRNP1, FRG2B, SYCE1) 0.400395395297629 9 0.203410914161458 1.27675189674995 73 1.88145990235116 6 3 3 -6.73338570091295 LTS-023 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 1.41543586884703 8 3.9399317230306 6 NA NA -5.76441043808874 LTS-023 chr11 193025 193096 72 * SCGB1C1 0.018 1 NA 0.016 1 NA NA NA NA NA LTS-023 chr11 193097 205198 12102 * c(ODF3, SCGB1C1, BET1L) 0.365459117816965 9 0.216899426258142 0.736667812137103 109 0.19349664575855 3 2 1 -6.74105699013418 LTS-023 chr11 205199 218811 13613 * c(SIRT3, BET1L, RIC8A) 0.049 1 NA 0.850712808688989 155 0.457559195544941 3 3 0 -5.76506993258417 LTS-023 chr11 218812 831077 612266 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, LRRC56, LOC143666, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, CEND1, CDHR5, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RPLP2, SNORA52, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.0362823650131838 111 0.0482744966522389 0.823212419204619 2271 0.58714788019669 3 3 0 -6.74504216800583 LTS-023 chr11 831078 831082 5 * CRACR2B NA 0 NA 1.07 1 NA NA NA NA NA LTS-023 chr11 831083 1012861 181779 * c(AP2A2, CRACR2B, MUC6, POLR2L, CHID1, TSPAN4, CD151) 0.0435038361868751 16 0.017764665303161 0.860114790657095 456 0.289895848917482 3 3 0 -6.79633051192661 LTS-023 chr11 1012862 1016834 3973 * MUC6 0.285 1 NA 0.850111458953834 43 0.124000593897052 3 3 0 -5.76700234371708 LTS-023 chr11 1016835 1017773 939 * MUC6 0.294427197176537 25 0.0920347398178173 0.819927644591287 48 0.360734829232328 7 5 2 -6.73544759247288 LTS-023 chr11 1017774 1017783 10 * MUC6 0.436 1 NA 0.524 1 NA NA NA NA NA LTS-023 chr11 1017784 1018483 700 * MUC6 0.397247817227405 10 0.0868626629929236 0.922026313082135 25 0.229429052214405 4 2 2 -6.73307901023479 LTS-023 chr11 1018484 1019375 892 * MUC6 0.047 1 NA 0.679916810642099 11 0.405577680038553 3 3 0 -5.76443887900392 LTS-023 chr11 1019376 1161935 142560 * c(MUC2, MUC6, MUC5B) 0.0625246324796855 37 0.0796356473969813 0.884269749581681 474 0.600510656119325 3 3 0 -6.79149327712125 LTS-023 chr11 1161936 1212846 50911 * MUC5B 0.211 1 NA 0.953814080762239 12 0.170979065704229 4 4 0 -5.7650126525323 LTS-023 chr11 1212847 1213245 399 * MUC5B 0.248408638388391 9 0.153381423618087 0.725882490136622 21 0.41998070250452 8 6 2 -6.73671739276539 LTS-023 chr11 1213246 1213257 12 * MUC5B 0.412 1 NA 1.272 1 NA NA NA NA NA LTS-023 chr11 1213258 1213556 299 * MUC5B 0.37120966299468 11 0.0937170790682835 1.37954073709024 17 0.80787151806824 13 8 5 -6.73322219375406 LTS-023 chr11 1213557 1215425 1869 * MUC5B 0 1 NA 0.991003197692421 21 1.80061013204387 4 4 0 -5.7644102046963 LTS-023 chr11 1215426 1253401 37976 * MUC5B 0.0317097959722989 15 0.0203406700268909 0.913283640607211 151 0.458054820166916 4 4 0 -6.73746631371055 LTS-023 chr11 1253402 1253969 568 * MUC5B 0.331 1 NA 0.840450187121097 12 0.18995364267009 3 3 0 -5.76454123960229 LTS-023 chr11 1253970 1258295 4326 * MUC5B 0.220605524997534 10 0.124506849432292 0.925251427545081 48 0.318669857815486 5 4 1 -6.73593102352959 LTS-023 chr11 1258296 1262907 4612 * MUC5B 0.04 1 NA 0.800655032641361 53 0.202712000872007 3 3 0 -5.76473452214092 LTS-023 chr11 1262908 2946381 1683474 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.030926515302737 81 0.0488293640151442 0.86071857708294 2077 0.385524361422483 4 4 0 -6.84040317042418 LTS-023 chr11 2946382 4103537 1157156 * c(MIR4687, OR7E12P, OSBPL5, MRGPRE, ART5, PGAP2, MRGPRG-AS1, MRGPRG, RHOG, ART1, NAP1L4, NUP98, SLC22A18, CHRNA10, TSSC2, SNORA54, STIM1, TRPC2, PHLDA2, ZNF195, CARS) 0.0348345672873616 42 0.0251831502578722 0.773562038419281 1174 0.243549871674531 3 3 0 -6.76403785131389 LTS-023 chr11 4103538 5776991 1673454 * c(LOC100506082, TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, MMP26, RRM1, TRIM21, NA NA NA NA NA NA NA NA NA LTS-023 STIM1, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, TRIM5) 0.0316818698527635 97 0.0235563911771752 0.876033190050228 2213 0.579950031220411 4 4 0 -6.77118226603014 LTS-023 NA NA NA NA LTS-023 chr11 5776992 5809500 32509 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.0289282032302755 2 0.0014142135623731 1.85716144189856 39 0.757876449397002 4 4 0 -7.10882486263366 LTS-023 chr11 5809501 5809505 5 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.841 1 NA NA NA NA NA LTS-023 chr11 5809506 5923368 113863 * c(TRIM22, OR52N2, OR52E6, OR52E8, OR52E4, OR52N1, TRIM5) 0.0342482634129528 15 0.0133908284177748 0.811977100705508 153 0.693124979795202 4 4 0 -6.79601170161171 LTS-023 chr11 5923369 5968526 45158 * TRIM5 NA 0 NA 1.027 1 NA NA NA NA NA LTS-023 chr11 5968527 7335539 1367013 * c(TRIM3, PRKCDBP, TPP1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, TIMM10B, RBMXL2, OR10A4, APBB1, HPX, NLRP14, OR52L1, OR2AG2, OR10A2, ILK, GVINP1, OR56A3, OR56A5, MRPL17, SMPD1, TAF10, ZNF214, ZNF215, FAM160A2, OR6A2, DCHS1, CCKBR) 0.0267885045031601 117 0.0178451480071638 1.13935106880745 2796 1.42468338781205 5 5 0 -6.7442156187464 LTS-023 chr11 7335540 7437239 101700 * SYT9 NA 0 NA 0.728 1 NA NA NA NA NA LTS-023 chr11 7437240 7794746 357507 * c(SYT9, OLFML1, OVCH2, CYB5R2, PPFIBP2) 0.0362121020176223 27 0.0228436404461266 0.851048654453161 493 0.514118080686594 3 3 0 -6.7560111717943 LTS-023 chr11 7794747 7846632 51886 * c(OR5P2, OR5P3) 0.062 2 0.0014142135623731 0.310307041667951 39 0.331770592497111 18 17 1 -8.32668072256667 LTS-023 chr11 7846633 7846692 60 * OR5P3 NA 0 NA 1.054 1 NA NA NA NA NA LTS-023 chr11 7846693 9187567 1340875 * c(MIR5691, OR5P3, DENND5A, OR5E1P, OR10A3, KRT8P41, LOC283299, NLRP10, OR10A6, LMO1, TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, RPL27A, SNORA3A, STK33, ST5, SNORA3B, TUB, RIC3, EIF3F, TRIM66) 0.0354452147540824 63 0.0239187479357967 0.834178894745578 1887 0.363029135154568 3 3 0 -6.82011484995013 LTS-023 chr11 9187568 9191340 3773 * DENND5A NA 0 NA 0.726 1 NA NA NA NA NA LTS-023 chr11 9191341 17803941 8612601 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, USH1C, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, SBF2-AS1, CSNK2A3, OTOG, GALNT18, NCR3LG1, KCNC1, KCNJ11, INSC, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, RNF141, PDE3B, PIK3C2A, USP47, SOX6, PARVA, PSMA1, PTH, ZBED5, RPS13, LOC644656, RASSF10, SNORA23, ABCC8, SNORD97, TEAD1, ZBED5-AS1, NA NA NA NA NA NA NA NA NA LTS-023 WEE1, ZNF143, CALCA, CALCB, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.0327121943156963 127 0.0296202752335606 0.783924340924751 5893 0.407652611994853 3 3 0 -6.83198778373299 LTS-023 NA NA NA NA LTS-023 chr11 17803942 18159939 355998 * c(SAAL1, MRGPRX3, SERGEF, KCNC1, SAA3P, TPH1) 0.0482241100952758 10 0.0198239473589114 0.747680578564124 328 0.619103670128939 3 3 0 -6.85903314621459 LTS-023 chr11 18159940 18194827 34888 * c(MRGPRX3, MRGPRX4) 0.048 1 NA 0.787567602379076 13 0.227180347425587 3 3 0 -5.76554632849711 LTS-023 chr11 18194828 18300954 106127 * c(SAA2-SAA4, HPS5, MRGPRX4, LOC494141, SAA1, SAA2, SAA4) 0.308885088316845 9 0.184101723089287 0.713068987367924 201 0.267506236222467 3 2 1 -6.75249288312946 LTS-023 chr11 18300955 18301176 222 * HPS5 0 1 NA 0.895505393084512 6 0.894344378115425 4 4 0 -5.76441139218625 LTS-023 chr11 18301177 19076421 775245 * c(SPTY2D1-AS1, HPS5, MRGPRX2, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, IGSF22, GTF2H1, LDHA, LDHC, UEVLD, TSG101, PTPN5) 0.0360676799612794 21 0.0296427137116438 0.725637907525952 1094 0.254868255948304 3 3 0 -6.74507114456148 LTS-023 chr11 19076422 33765128 14688707 * c(LOC100126784, C11orf91, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, CSTF3, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, KIAA1549L, SVIP, GAS2, FBXO3, ELP4, LINC00294, LUZP2, CSTF3-AS1, DCDC1, KCNA4, FIBIN, NAV2-AS4, DKFZp686K1684, NELL1, CCDC73, BDNF-AS, PAX6, WT1-AS, ZDHHC13, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, NA NA NA NA NA NA NA NA NA LTS-023 ANO3, MIR610, MPPED2, WT1, PRRG4, E2F8, QSER1, CSRP3, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5, DEPDC7, CD59) 0.037698662872544 143 0.0303031240354439 0.814485074818876 5812 0.303790064452094 3 3 0 -7.37566878206132 LTS-023 NA NA NA NA LTS-023 chr11 33765129 33765213 85 * FBXO3 0.093 1 NA 0.078 1 NA NA NA NA NA LTS-023 chr11 33765214 34133552 368339 * c(FBXO3, LMO2, CAPRIN1, NAT10) 0.037380487537764 11 0.0256564718044891 0.731467576037163 341 0.304324617721811 3 3 0 -6.73659736830932 LTS-023 chr11 34133553 34133586 34 * NAT10 0.318 1 NA 0.341212337667611 2 0.313248304065641 1 1 0 -5.76441620081518 LTS-023 chr11 34133587 34172784 39198 * c(ABTB2, NAT10) 0.25144980464484 8 0.167423703305629 0.765571411192665 145 0.507109784583861 4 3 1 -6.7424473583501 LTS-023 chr11 34172785 34181811 9027 * ABTB2 0 1 NA 0.813819812447757 47 0.572806191826699 3 3 0 -5.76453142323012 LTS-023 chr11 34181812 48328644 14146833 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, C11orf74, OR4X2, OR4B1, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, FJX1, OR4S1, ABTB2, PAMR1, EHF, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, OR4X1, ARHGAP1, HNRNPKP3, FAM180B, NA NA NA NA NA NA NA NA NA LTS-023 LRP4, MIR129-2, MDK, MYBPC3, NDUFS3, APIP, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, PTPRJ, RAG1, RAG2, RAPSN, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, AGBL2, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, CD44, ATG13, CKAP5) 0.0319145033713892 194 0.0371625381788869 0.764900889338042 7636 0.42603226147347 3 3 0 -6.78124813439705 LTS-023 NA NA NA NA LTS-023 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.707864683840794 4 0.066588287258346 3 NA NA -5.77135399614467 LTS-023 chr11 48346420 48346423 4 * character(0) 0.35 1 NA 2.957 1 NA NA NA NA NA LTS-023 chr11 48346424 48346962 539 * OR4C3 0.287458722514611 20 0.0978259867530634 1.85990678403129 30 1.30735828268702 14 10 4 -6.73327183676457 LTS-023 chr11 48346963 48346999 37 * OR4C3 0.397 1 NA 2.074 1 NA NA NA NA NA LTS-023 chr11 48347000 48366958 19959 * c(OR4C3, OR4C45) 0.360325377286998 23 0.0679168289319659 1.31919248860836 43 1.32712155565242 8 5 3 -6.73727224852204 LTS-023 chr11 48366959 48366971 13 * OR4C45 0.031 1 NA 2.157 1 NA NA NA NA NA LTS-023 chr11 48366972 48367249 278 * OR4C45 0.292555567551275 8 0.0309596511608254 1.28942838849392 15 0.695078563562285 7 5 2 -6.7330529118999 LTS-023 chr11 48367250 48367252 3 * OR4C45 0.305 1 NA 2.108 1 NA NA NA NA NA LTS-023 chr11 48367253 48388657 21405 * OR4C45 0.350866928477718 51 0.0616948467673521 1.23434530466846 93 0.871733573860825 11 7 4 -6.74771111502386 LTS-023 chr11 48388658 48388675 18 * character(0) NA 0 NA 0.762 1 NA NA NA NA NA LTS-023 chr11 48388676 48388717 42 * character(0) 0.3850262418072 3 0.00264575131106459 1.26892060853447 3 0.111648257188965 17 10 7 -6.74000003997635 LTS-023 chr11 48388718 48453787 65070 * character(0) 0.038 1 NA 0.486988840196599 3 0.314860815811262 2 2 0 -5.7658117490553 LTS-023 chr11 48453788 50004101 1550314 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, TRIM64C) 0.0419200551489701 14 0.0218098677132698 0.806537016607031 397 0.513722874073869 3 3 0 -6.76413236411161 LTS-023 chr11 50004102 50246909 242808 * LOC441601 NA 0 NA 1.07 1 NA NA NA NA NA LTS-023 chr11 50246910 51527478 1280569 * c(OR4C46, LOC441601, LOC646813, OR4A5) 0.0389093184847842 3 0.00152752523165195 1.14859425390841 65 0.292288401438348 3 3 0 -8.06210719228876 LTS-023 chr11 51527479 51527703 225 * character(0) NA 0 NA 1.25804062537721 3 0.0715914333795135 5 NA NA -5.76445506256812 LTS-023 chr11 55035776 55322319 286544 * c(TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) 0 1 NA 1.03905498739968 57 0.851724394528881 4 4 0 -5.7653088235761 LTS-023 chr11 55322320 56113769 791450 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8J3, OR4P4, OR4C15, TRIM51) 0.0445050598415955 28 0.042919436649705 1.214861609733 683 0.66136152905643 4 4 0 -6.85134342242735 LTS-023 chr11 56113770 56143113 29344 * c(OR8J1, OR8K1, OR8U8) 0.285 1 NA 1.12136593172515 43 0.17291972865506 5 5 0 -5.76759927781161 LTS-023 chr11 56143114 56143767 654 * OR8U8 0.240986043719655 17 0.127783076758553 2.12030111209482 32 1.72696236644606 17 13 4 -6.73311321235763 LTS-023 chr11 56143768 56143784 17 * OR8U8 0.036 1 NA 1.20306134077545 3 0.61920998053972 5 5 0 -5.76441013492307 LTS-023 chr11 56143785 56458869 315085 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8) 0.0295191902583472 18 0.0236095693460487 1.18967991888901 250 1.00961234901179 4 4 0 -6.7405309732623 LTS-023 chr11 56458870 56467926 9057 * c(OR8U8, OR9G9) 0.426 1 NA 1.17032589242102 7 0.851609037282339 5 5 0 -5.76441727932146 LTS-023 chr11 56467927 56468416 490 * c(OR8U8, OR9G9) 0.354125742409492 9 0.164341108673393 1.52577704576788 20 1.03370140247253 11 7 4 -6.73325861102023 LTS-023 chr11 56468417 56468448 32 * c(OR8U8, OR9G9) 0.068 1 NA 3.77 1 NA NA NA NA NA LTS-023 chr11 56468449 56468816 368 * c(OR8U8, OR9G9) 0.316894432783127 13 0.184128961217334 1.42675251634513 21 1.02813270636857 19 13 6 -6.73331034823397 LTS-023 chr11 56468817 56510623 41807 * c(OR9G4, OR8U8) 0.025 1 NA 1.28171321375777 18 0.755532690926623 5 5 0 -5.76456850564298 LTS-023 chr11 56510624 56958810 448187 * c(OR5AK4P, LRRC55, OR9G4, OR5AK2) 0.00995480489055115 10 0.0128166558300778 1.1910952749397 190 0.917274522786478 9 9 0 -6.90644481937309 LTS-023 chr11 56958811 59131957 2173147 * c(TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, DTX4, ZDHHC5, TIMM10, SELENOH, LOC283194, SLC43A3, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, MIR130A, OR5B3, P2RX3, TMX2, PRG2, FAM111A, BTBD18, SSRP1, SERPING1, ZFP91, OR10W1, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, LPXN) 0.0256824031118561 55 0.0185297104227284 1.08724781878234 2603 0.423403634879253 5 5 0 -6.81387947812338 LTS-023 chr11 59131958 60869866 1737909 * c(MIR3162, PTGDR2, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, MS4A6E, GIF, PRPF19, LINC00301, MS4A10, OR5AN1, OR4D10, OR4D9, OR10V1, OSBP, MS4A13, SLC15A3, MS4A4A, MS4A12, MRPL16, TMEM132A, MS4A7, MS4A6A, MS4A5, STX3, TCN1, TMEM109, CCDC86, OR10V2P, MS4A8, MS4A14, CD6, MS4A1, MS4A3) 0.0200552930720459 107 0.0175655660171967 1.32450650457116 2226 0.833625260258906 6 6 0 -6.7438588619785 LTS-023 chr11 60869867 62012311 1142445 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, FTH1, TKFC, DKFZP434K028, INCENP, LRRC10B, FADS1, FADS3, SCGB2A1, TMEM216, TMEM138, PGA5, SDHAF2, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, CPSF7, SYT7, CD5, FADS2) 0.0128043969722702 45 0.011453110379881 1.98211517823494 2509 0.94441278799159 9 9 0 -6.74691222747093 LTS-023 chr11 62012312 62037562 25251 * character(0) NA 0 NA 1.37 1 NA NA NA NA NA LTS-023 chr11 62037563 62414299 376737 * c(EEF1G, GANAB, EML3, B3GAT3, SCGB1D4, SCGB2A2, ROM1, TUT1, SCGB1A1, AHNAK, ASRGL1, MTA2) 0.0181357560484047 16 0.0135941163743731 1.24631995002723 1071 0.470734886070006 6 6 0 -6.77528117019097 LTS-023 chr11 62414300 62417461 3162 * INTS5 0.041 1 NA 1.26694948508068 65 0.263695493821071 5 5 0 -5.76447415764189 LTS-023 chr11 62417462 62438984 21523 * c(SNORA57, METTL12, LBHD1, INTS5) 0.0514499229483533 9 0.0936482781475452 1.11548675155447 120 0.398287721331684 3 3 0 -6.75660519779456 LTS-023 chr11 62438985 62439414 430 * c(LBHD1, UQCC3) 0.031 1 NA 1.20156391074189 10 0.401908447286195 5 5 0 -5.76441016748216 LTS-023 chr11 62439415 66296996 3857582 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, DPP3, KCNK7, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, CATSPER1, HRASLS5, COX8A, C11orf84, CST6, CTSW, GPHA2, MARK2, ESRRA, FAU, TIGD3, LRRN4CL, HNRNPUL2, FKBP2, ATG2A, FAM89B, SNHG1, POLA2, FLRT1, NA NA NA NA NA NA NA NA NA LTS-023 PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, EFEMP2, SLC29A2, DNAJC4, TMEM179B, MALAT1, SLC22A25, SLC22A10, SPDYC, PCNX3, ARL2, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, OVOL1, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, PPP2R5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, BBS1, PYGM, MAP4K2, RARRES3, RELA, DPF2, KLC2, SIPA1, MRPL11, SLC3A2, C11orf95, STX5, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, TMEM223, UQCC3, NAA40, ZBTB3, MUS81, FOSL1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, BANF1, GAL3ST3, RPS6KA4, SART1, AP5B1, FIBP, SNORD29, SNORD31, SNORD30, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, RIN1) 0.0205967638665234 231 0.0186162045463327 1.27629625111211 10834 0.43061752000803 5 5 0 -6.79792175946087 LTS-023 NA NA NA NA LTS-023 chr11 66296997 66297275 279 * c(ZDHHC24, BBS1) NA 0 NA 1.524 1 NA NA NA NA NA LTS-023 chr11 66297276 66300444 3169 * c(ZDHHC24, BBS1) NA 0 NA 2.61693119292595 40 0.799954876531908 11 NA NA -5.76441052161224 LTS-023 chr11 66300445 66743948 443504 * c(RBM14-RBM4, RBM14, ZDHHC24, C11orf86, PC, CCDC87, BBS1, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, CTSF, ACTN3, CCS, RCE1) 0.0194629654936579 19 0.019650603014422 1.3129682667488 1162 0.415873308894899 6 6 0 -6.74801406120175 LTS-023 chr11 66743949 67817101 1073153 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, C11orf86, NUDT8, GSTP1, RHOD, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, SYT12, ACY3, PITPNM1) 0.0260808705333095 59 0.0161985958075619 1.1145714746797 1952 0.407906958630924 5 5 0 -6.76320680844013 LTS-023 chr11 67817102 67864663 47562 * c(TCIRG1, CHKA) NA 0 NA 1.14996036064864 107 0.215057937759092 5 NA NA -5.76585728785917 LTS-023 chr11 67864664 67888288 23625 * CHKA NA 0 NA 0.655 1 NA NA NA NA NA LTS-023 chr11 67888289 67924559 36271 * c(CHKA, KMT5B) 0.149 1 NA 0.711434366318749 55 0.125434705404307 3 3 0 -5.7676930811633 LTS-023 chr11 67924560 75279447 7354888 * c(KCNE3, LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, TPBGL, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, CPT1A, XRRA1, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, C2CD3, MYEOV, P4HA3, PGM2L1, KLHL35, ALG1L9P, OR2AT4, IGHMBP2, INPPL1, DNAJB13, NA NA NA NA NA NA NA NA NA LTS-023 KRTAP5-9, KRTAP5-10, LIPT2, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, KRTAP5-7, KRTAP5-11, MIR326, NUMA1, P2RY2, P2RY6, GAL, KMT5B, COA4, PDE2A, PPME1, MRPL48, C11orf24, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, KRTAP5-8, PLEKHB1, RAB6A, CCND1, SNORD15A, RPS3, UCP2, UCP3, PAAF1, GDPD5, CLPB, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, TESMIN, SPCS2, ARHGEF17, FCHSD2, FGF19) 0.0348980222028373 216 0.0258430147733457 0.787209342124598 7644 0.32305451704888 3 3 0 -6.86267397593284 LTS-023 NA NA NA NA LTS-023 chr11 75279448 75279476 29 * SERPINH1 0.048 1 NA 0.528197607645722 3 0.4325752343042 2 2 0 -5.76441017640066 LTS-023 chr11 75279477 75442647 163171 * c(MAP6, MOGAT2, SERPINH1) 0.044046886437247 9 0.133348332489678 0.771453190758646 245 0.532652872236481 3 3 0 -6.73423347372387 LTS-023 chr11 75442648 75442755 108 * character(0) 0.035 1 NA 0.952764285217877 3 1.20804980581652 4 4 0 -5.76441016240097 LTS-023 chr11 75442756 78128811 2686056 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, B3GNT6, GDPD4, TSKU, LRRC32, AQP11, LOC283214, KCTD21, AAMDC, GUCY2EP, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, THAP12, EMSY, USP35, KCTD14, THRSP, CAPN5, UVRAG, WNT11, ALG8, DGAT2, INTS4, GAB2) 0.0394138164836104 103 0.030021300896522 0.789897461351487 2885 0.366934523906795 3 3 0 -6.77027679044582 LTS-023 chr11 78128812 78147058 18247 * c(NARS2, GAB2) NA 0 NA 1.441 1 NA NA NA NA NA LTS-023 chr11 78147059 78413412 266354 * c(TENM4, NARS2) 0.0271100140725105 4 0.0134412301024373 1.15818407589165 282 0.307715586637089 5 5 0 -6.75842537725732 LTS-023 chr11 78413413 83770565 5357153 * c(MIR708, SNORA70E, MIR4300, RAB30-AS1, MIR5579, DLG2, DDIAS, FAM181B, TENM4, RAB30, ANKRD42, PCF11, PRCP, CCDC90B) 0.0431737178405795 36 0.0256158433117364 0.75918360372042 1348 0.27374634944016 3 3 0 -6.75986375089356 LTS-023 chr11 83770566 85988955 2218390 * c(DLG2, CCDC83, CCDC89, SYTL2, TMEM126B, CREBZF, PICALM, TMEM126A, EED) 0.0276043339753885 24 0.0204322404369996 0.903115370059877 894 0.249452536973669 4 4 0 -6.87111213607653 LTS-023 chr11 85988956 85988961 6 * EED NA 0 NA 0.98 1 NA NA NA NA NA LTS-023 chr11 85988962 110050476 24061515 * c(NAALAD2, WTAPP1, MIR1304, MIR1260B, MIR3920, LOC100506368, CASP12, MIR4490, MIR4693, GRM5-AS1, JRKL-AS1, LOC101054525, YAP1, CTSC, ME3, GPR83, PRSS23, CARD16, TMEM123, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, AMOTL1, DEUP1, C11orf65, DDX10, FOLH1B, ENDOD1, EXPH5, RAB38, PANX1, FUT4, ANGPTL5, CHORDC1, GRIA4, C11orf54, GRM5, GUCY1A2, BIRC2, BIRC3, HEPHL1, ACAT1, NA NA NA NA NA NA NA NA NA LTS-023 VSTM5, TRIM77, IZUMO1R, KDM4E, C11orf87, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, MTNR1B, ATM, NPAT, NOX4, HIKESHI, CWC15, PGR, CNTN5, SLC35F2, RAB39A, ANKRD49, ELMOD1, KDM4D, SMCO4, TRIM49, CEP126, CARD18, RDX, CCDC81, AASDHPPT, SCARNA9, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, LOC643733, LOC643923, TMEM135, SNORA8, SLN, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 DYNC2H1, CCDC82, PDGFD, CUL5, FZD4, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, CEP295, ZC3H12C, OR7E2P, JRKL, EED, MTMR2, ALKBH8, MMP20, MED17, CEP57) 0.0331928703975446 271 0.0339673025291933 1.00371641057035 11158 0.37527264974049 4 4 0 -6.81184538909894 LTS-023 NA NA NA NA LTS-023 chr11 110050477 110050535 59 * RDX NA 0 NA 2.882 1 NA NA NA NA NA LTS-023 chr11 110050536 114320583 4270048 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, RBM7, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, DRD2, FDX1, SIK2, ANKK1, REXO2, TIMM8B, HSPB2, HTR3A, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, NNMT, C11orf71, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, ZBTB16, ALG9, TMPRSS5, BCO2, DIXDC1, HTR3B, ZW10, FDXACB1) 0.02239244804833 65 0.0162508431733912 1.29976156444894 3548 0.582365854580081 5 5 0 -6.78422053688234 LTS-023 chr11 114320584 114421747 101164 * c(NXPE1, REXO2) 0.335 1 NA 1.2410052779558 57 0.30645765733515 5 5 0 -5.76490809662184 LTS-023 chr11 114421748 114421967 220 * NXPE1 0.307779286743196 14 0.153951772810995 1.65329164897977 20 0.796883561460717 13 9 4 -6.73320199018295 LTS-023 chr11 114421968 114441486 19519 * c(NXPE1, NXPE4) 0.053 1 NA 1.15677214524227 5 0.587350832126762 5 5 0 -5.76447153453646 LTS-023 chr11 114441487 117308126 2866640 * c(BACE1-AS, LOC100652768, APOA5, NXPE2, CEP164, SIK3, BACE1, CADM1, RNF214, LINC00900, APOA1, APOA4, APOC3, PAFAH1B2, SIDT2, NXPE4, DSCAML1, TAGLN, BUD13, ZPR1, PCSK7) 0.0177553751727372 37 0.0169362432769589 1.30398451552981 1827 0.567856163963179 6 6 0 -6.80133351544654 LTS-023 chr11 117308127 117308660 534 * DSCAML1 NA 0 NA 2.785 1 NA NA NA NA NA LTS-023 chr11 117308661 118064632 755972 * c(TMPRSS4-AS1, FXYD6-FXYD2, JAML, IL10RA, FXYD2, FXYD6, TMPRSS4, DSCAML1, SCN2B, SCN4B, TMPRSS13) 0.00871937095691763 50 0.00888667886358508 2.4688703537071 925 1.37884573212563 14 14 0 -6.75781471793413 LTS-023 chr11 118064633 118064665 33 * JAML NA 0 NA 1.723 1 NA NA NA NA NA LTS-023 chr11 118064666 119534081 1469416 * c(LOC100131626, USP2-AS1, MIR3656, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, CCDC84, ARCN1, MCAM, KMT2A, TRAPPC4, VPS11, IFT46, NECTIN1, RPS25, ABCG4, CXCR5, RPL23AP64, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMEM25, CBL, USP2, CD3D, CD3E, CD3G, UBE4A, C2CD2L) 0.0205805452064187 79 0.0158424161242228 1.26414378858209 4081 0.716650167360799 6 6 0 -6.76116217735459 LTS-023 chr11 119534082 120531129 997048 * c(TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, NECTIN1, LOC649133) 0.0212188339575727 17 0.0155021345778763 1.39834432887922 848 0.506502522252967 6 6 0 -6.73538545061978 LTS-023 chr11 120531130 120673438 142309 * GRIK4 NA 0 NA 2.203 1 NA NA NA NA NA LTS-023 chr11 120673439 120745945 72507 * GRIK4 0.0193478715550721 3 0.0181934053986603 1.85795049212238 144 0.7572619668461 7 7 0 -6.73728392606545 LTS-023 chr11 120745946 120769206 23261 * GRIK4 NA 0 NA 1.339 1 NA NA NA NA NA LTS-023 chr11 120769207 125703329 4934123 * c(PATE3, MIR4493, CHEK1, PANX3, PATE1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, HEPACAM, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, GRIK4, HSPA8, TMEM225, OR8D4, LOC341056, STT3A, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, NRGN, SPA17, SIAE, ROBO4, SCN3B, ACRV1, CRTAM, GRAMD1B, SC5D, PKNOX2, NA NA NA NA NA NA NA NA NA LTS-023 HEPN1, ROBO3, SORL1, TECTA, ZNF202, MSANTD2, CLMP, C11orf63, CCDC15, TBRG1, UBASH3B, ESAM, EI24, FEZ1) 0.0188966404409966 138 0.020581970965552 1.31588757493314 4590 0.889288080555993 6 6 0 -6.76665398364694 LTS-023 NA NA NA NA LTS-023 chr11 125703330 125707741 4412 * PATE4 NA 0 NA 3.143 1 NA NA NA NA NA LTS-023 chr11 125707742 125709965 2224 * PATE4 0 2 0 2.42817563835443 39 1.06492182019663 0 0 0 -Inf LTS-023 chr11 125709966 125763370 53405 * c(HYLS1, PATE4) NA 0 NA 1.205 1 NA NA NA NA NA LTS-023 chr11 125763371 130098095 4334725 * c(MIR3167, SENCR, KIRREL3-AS2, TIRAP, TMEM45B, ETS1, C11orf45, HYLS1, FLI1, KIRREL3-AS3, DCPS, ZBTB44, DDX25, APLP2, KCNJ1, KCNJ5, ST3GAL4-AS1, LINC00167, NFRKB, CDON, FOXRED1, PRDM10, TP53AIP1, ST3GAL4, SRPRA, ST14, FAM118B, PUS3, KIRREL3, RPUSD4, BARX2, ARHGAP32) 0.02065932054298 94 0.0134341135206445 1.26699891739953 2856 0.556447549915293 5 5 0 -6.80138853104453 LTS-023 chr11 130098096 130098994 899 * ZBTB44 0.028 1 NA 1.20844589071756 19 0.305634112177152 5 5 0 -5.76441014257631 LTS-023 chr11 130098995 134244123 4145129 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, C11orf44, MIR4697HG, ZBTB44, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.0338014874255993 84 0.0254351768513069 1.26479599995591 2040 0.520578938294036 5 5 0 -6.83218246478423 LTS-023 chr11 134244124 134856681 612558 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 1.32088494423918 61 0.200018760049113 6 NA NA -5.82899479511243 LTS-023 chr12 90923 248202 157280 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.293 1 NA 1.37647144580746 47 0.322013250915288 6 6 0 -5.76609854534146 LTS-023 chr12 248203 1901197 1652995 * c(LINC00942, MIR3649, FBXL14, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, ADIPOR2, WNT5B, CCDC77, CACNA2D4) 0.25700152774509 74 0.102168552795386 1.27789241395372 1867 0.590219111915454 5 4 1 -6.84068406213151 LTS-023 chr12 1901198 1902854 1657 * CACNA2D4 0.24 1 NA 1.44072284048378 37 0.283287889837403 6 6 0 -5.76441021471294 LTS-023 chr12 1902855 2038814 135960 * c(LINC00940, LRTM2, CACNA2D4) 0.0220775842085147 9 0.103333333333333 1.37810097025417 289 0.732360672666358 6 6 0 -6.73339995284908 LTS-023 chr12 2038815 2055266 16452 * c(LINC00940, DCP1B) 0.273 1 NA 1.22569294011366 13 0.364185286738664 5 5 0 -5.76442765481173 LTS-023 chr12 2055267 6450945 4395679 * c(LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, DCP1B, FGF6, FKBP4, FOXM1, GALNT8, LOC283440, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, TEAD4, TNFRSF1A, TULP3, VWF, CACNA1C, FGF23, RHNO1, NRIP2, CRACR2A, DYRK4, CCND2, CD9) 0.233494173168052 119 0.115493275851204 1.32480650239347 3501 0.505554444720821 5 4 1 -6.83604961825857 LTS-023 chr12 6450946 6458043 7098 * c(SCNN1A, TNFRSF1A) 0.262 1 NA 1.20004923434729 43 0.352258897855674 5 5 0 -5.76441128921974 LTS-023 chr12 6458044 6497061 39018 * c(LTBR, SCNN1A) 0.312 1 NA 1.27959489766624 117 0.289872612193244 5 5 0 -5.76535955455613 LTS-023 chr12 6497062 6602732 105671 * c(LTBR, MRPL51, TAPBPL, CD27-AS1, VAMP1, CD27) 0.327490730830381 14 0.0314140201079177 1.15474399143055 260 0.324895843217036 6 4 2 -6.79821232725941 LTS-023 chr12 6602733 6630099 27367 * c(SCARNA10, NCAPD2) 0 1 NA 1.19697949154308 73 0.430277433420353 5 5 0 -5.76441633554728 LTS-023 chr12 6630100 6747578 117479 * c(CHD4, IFFO1, GAPDH, NOP2, LPAR5, SCARNA11, ACRBP, NCAPD2) 0.196988390758538 12 0.121529894065268 1.17410798260478 616 0.350747448921935 5 4 1 -6.74703563686306 LTS-023 chr12 6747579 6749289 1711 * c(LPAR5, ACRBP) 0.325 1 NA 1.19016603257633 9 0.175996764490462 5 5 0 -5.76441669212492 LTS-023 chr12 6749290 7079333 330044 * c(LRRC23, P3H3, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, GPR162, GNB3, RPL13P5, LAG3, MIR141, MIR200C, COPS7A, ING4, PTMS, PTPN6, SCARNA12, TPI1, USP5, MLF2, CDCA3, ACRBP, SPSB2, CD4) 0.339408006790104 41 0.0830158888700112 1.12109016857785 1475 0.306740548770546 6 4 2 -6.86154930664029 LTS-023 chr12 7079334 7079563 230 * PHB2 0.286 1 NA 0.907731407721864 7 0.350878828630273 4 4 0 -5.76441616936187 LTS-023 chr12 7079564 7361293 281730 * c(LPCAT3, EMG1, PHB2, C1RL-AS1, C1RL, PEX5, C1R, C1S, RBP5, CLSTN3) 0.0889858602488538 9 0.162689974423066 1.13777024095763 693 0.633542200520891 4 4 0 -6.82048412641835 LTS-023 chr12 7361294 7363574 2281 * PEX5 0.355 1 NA 1.11331701928132 35 0.247917606264255 5 5 0 -5.764555509471 LTS-023 chr12 7363575 7653981 290407 * c(CD163L1, ACSM4, PEX5, CD163) 0.278072933531467 17 0.136827661032152 1.16068581408168 343 0.609784271671777 4 3 1 -6.75229760075604 LTS-023 chr12 7653982 9590154 1936173 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.297307477731777 94 0.121317944190891 1.03098177018101 2267 0.486492569105764 4 3 1 -6.78919482989873 LTS-023 chr12 9590155 9590570 416 * DDX12P NA 0 NA 0.447 1 NA NA NA NA NA LTS-023 chr12 9590571 9747522 156952 * DDX12P NA 0 NA 0.66327713398141 104 0.19948822497683 3 NA NA -5.79763576411875 LTS-023 chr12 9747523 10282747 535225 * c(KLRF2, CLEC12A, CLECL1, CLEC9A, CLEC2D, LOC374443, KLRB1, CLEC2A, CLEC12B, CLEC1B, CLEC1A, KLRF1, CLEC7A, CD69, CLEC2B) 0.264466665806761 44 0.136303934957834 1.04103020600012 744 0.59150527867742 4 3 1 -6.73673926505102 LTS-023 chr12 10282748 10311920 29173 * c(OLR1, CLEC7A) 0 1 NA 1.00046203953137 31 1.20115785359265 4 4 0 -5.76441696839422 LTS-023 chr12 10311921 10344153 32233 * c(TMEM52B, OLR1) 0.158224606554077 9 0.163757527392721 1.01402016818415 117 0.348216539420466 6 5 1 -6.76402310659335 LTS-023 chr12 10344154 10365574 21421 * c(TMEM52B, GABARAPL1) 0.355 1 NA 0.717690076266434 13 0.226152546655956 3 3 0 -5.76481172028164 LTS-023 chr12 10365575 10573116 207542 * c(KLRC4-KLRK1, KLRK1, GABARAPL1, KLRC3, KLRD1, KLRC4) 0.351709211464767 11 0.0492990872126452 0.999808192179339 225 0.30616313798936 3 2 1 -6.87521456603231 LTS-023 chr12 10573117 10602459 29343 * c(KLRC1, KLRC2, KLRC3) 0.378234143425762 5 0.0310531801914071 1.48103478343301 116 0.569023257667133 5 3 2 -6.73965020686236 LTS-023 chr12 10602460 10603088 629 * KLRC1 NA 0 NA 0.983 1 NA NA NA NA NA LTS-023 chr12 10603089 13154996 2551908 * c(SMIM10L1, LOC100506314, PRH1-PRR4, CDKN1B, KLRA1P, PRR4, BORCS5, CREBL2, ETV6, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, GPR19, LINC01252, TAS2R42, KLRC1, RPL13AP20, LRP6, LOH12CR2, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, HEBP1, DDX47, MANSC1, MAGOHB, STYK1, PRB1, PRB3, PRB4, GPRC5D, PRH1, PRH2, PRB2, MIR613, MIR614, BCL2L14, DUSP16, APOLD1, YBX3, GPRC5A, HTR7P1) 0.323413476906249 109 0.127035749100162 0.990846891962677 2076 0.387897489626005 4 3 1 -6.8588926215324 LTS-023 chr12 13154997 13208502 53506 * c(FAM234B, HTR7P1) 0 1 NA 1.14666870555682 15 0.739481755465723 5 5 0 -5.76456464184205 LTS-023 chr12 13208503 14839140 1630638 * c(EMP1, LINC01559, GRIN2B, GUCY2C, ATF7IP, FAM234B, PLBD1, GSG1) 0.226007759511675 33 0.189376388883796 1.05188714460938 882 0.812351350197989 5 4 1 -6.76288419912182 LTS-023 chr12 14839141 14849146 10006 * GUCY2C 0.399 1 NA 1.12479888075295 9 0.135039603244546 5 5 0 -5.76604856951775 LTS-023 chr12 14849147 15776095 926949 * c(HIST4H4, ERP27, C12orf60, EPS8, GUCY2C, ARHGDIB, ART4, MGP, SMCO3, PDE6H, WBP11, H2AFJ, PTPRO, RERG) 0.383943240794276 31 0.0423917977458969 0.94665123961723 832 0.235694007870676 4 2 2 -6.79695431241385 LTS-023 chr12 15776096 15777162 1067 * EPS8 0 1 NA 0.945311492284942 5 0.0582769251076273 4 4 0 -5.76461482836606 LTS-023 chr12 15777163 19671776 3894614 * c(MIR3974, STRAP, AEBP2, EPS8, MGST1, DERA, PIK3C2G, PLEKHA5, LMO3, SKP1P2, SLC15A5, RERGL, PLCZ1, CAPZA3) 0.261369327485953 19 0.179473059112972 1.01713991598279 1062 0.285107579621941 4 3 1 -6.77954146294924 LTS-023 chr12 19671777 19671885 109 * AEBP2 NA 0 NA 2.228 1 NA NA NA NA NA LTS-023 chr12 19671886 20905753 1233868 * c(LOC100506393, AEBP2, PDE3A, SLCO1C1) 0.24360462221064 8 0.195735973772251 1.14152692377902 310 0.327983453750054 5 4 1 -6.76691309974064 LTS-023 chr12 20905754 21011480 105727 * c(SLCO1B3, SLCO1B7, SLCO1C1) 0.423 1 NA 1.18638872267885 29 0.271946115352237 5 5 0 -5.76466533201593 LTS-023 chr12 21011481 21200220 188740 * c(SLCO1B3, SLCO1B7) 0.408 1 NA 1.15534391686614 114 0.749553737594989 5 5 0 -5.76479617432605 LTS-023 chr12 21200221 21201624 1404 * c(SLCO1B3, SLCO1B7) NA 0 NA 0.5 1 NA NA NA NA NA LTS-023 chr12 21201625 24966802 3765178 * c(MIR920, ABCC9, SLCO1B1, LINC00477, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, GOLT1B, ETNK1, CMAS, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, PYROXD1, SPX, C2CD5) 0.332201928093002 52 0.130484055011975 1.0165693789839 1790 0.324466371131581 4 2 2 -6.90986519956273 LTS-023 chr12 24966803 27533367 2566565 * c(MIR4302, RASSF8-AS1, RASSF8, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, ITPR2, KRAS, LRMP, TM7SF3, CASC1, ASUN, ARNTL2, BCAT1, C12orf71, BHLHE41, SSPN, MED21) 0.38149014048871 43 0.0970974895690932 0.905675001668375 1844 0.284176708575823 4 2 2 -6.85536291613352 LTS-023 chr12 27533368 27575884 42517 * ARNTL2 0 1 NA 0.902042175584602 99 0.239204124273538 4 4 0 -5.76724939559247 LTS-023 chr12 27575885 27789321 213437 * c(SMCO2, ARNTL2, PPFIBP1) 0.189019890991259 11 0.181166673636085 1.13054073795032 106 4.58728859189575 6 5 1 -6.73453212701488 LTS-023 chr12 27789322 27789335 14 * PPFIBP1 0.327 1 NA 1.061 1 NA NA NA NA NA LTS-023 chr12 27789336 28732833 943498 * c(MANSC4, REP15, CCDC91, PTHLH, KLHL42, MRPS35, PPFIBP1) 0.364779797648765 19 0.107251030884234 0.973522968750204 652 0.470231678725583 4 2 2 -6.78579344522104 LTS-023 chr12 29423311 31265925 1842615 * c(LINC00941, DDX11-AS1, OVCH1-AS1, IPO8, DDX11, OVCH1, TSPAN11, ERGIC2, FAR2, CAPRIN2, TMTC1) 0.389827155147021 45 0.15103972987264 1.15469201560233 1257 0.46735805552744 5 3 2 -6.74506541110757 LTS-023 chr12 31265926 31265983 58 * character(0) 0.5 1 NA 1.081 1 NA NA NA NA NA LTS-023 chr12 31265984 31539508 273525 * c(DENND5B, FAM60A, FLJ13224) 0.187502979225577 9 0.247491413992486 1.10380631488525 253 0.521042769425036 5 4 1 -6.74540782547906 LTS-023 chr12 31539509 31648826 109318 * DENND5B 0.5 1 NA 1.13205839794068 157 0.267868187271431 5 5 0 -5.76816665126428 LTS-023 chr12 31648827 34182563 2533737 * c(DNM1L, RNU6-78P, DENND5B-AS1, FGD4, DENND5B, AMN1, ETFBKMT, SYT10, H3F3C, YARS2, PKP2, KIAA1551, BICD1, ALG10) 0.429177668371552 32 0.117054918011356 1.12912648217525 1199 0.320791006022421 5 3 2 -6.89853439563864 LTS-023 chr12 34182564 34182671 108 * character(0) NA 0 NA 1.83276220679464 3 0.117779454914684 8 NA NA -5.76441564907693 LTS-023 chr12 38710341 39047508 337168 * c(ALG10B, CPNE8) 0 1 NA 0.543206869603874 95 0.170590100916774 2 2 0 -5.78145269301262 LTS-023 chr12 39047509 40086040 1038532 * c(CPNE8, ABCD2, C12orf40, KIF21A) 0.203814983121677 12 0.109362165913689 0.471754561493554 526 0.139574460797189 2 2 0 -7.92330958250975 LTS-023 chr12 40086041 40716015 629975 * c(SLC2A13, LRRK2, C12orf40) 0.17779852604879 10 0.0578749610031066 0.860633891017782 430 0.282849847322809 5 4 1 -7.47174530506 LTS-023 chr12 40716016 40749974 33959 * LRRK2 0 1 NA 0.903278479865348 49 0.221482368656853 4 4 0 -5.76696543272563 LTS-023 chr12 40749975 40921479 171505 * LRRK2 0.103649155165902 13 0.0851067956550279 0.911608619072706 443 0.373626854554838 3 3 0 -7.08937562638323 LTS-023 chr12 40921480 40922104 625 * character(0) 0.206 1 NA 0.948343131480981 11 0.134401501614988 4 4 0 -5.76442849966453 LTS-023 chr12 40922105 42479178 1557074 * c(CNTN1, GXYLT1, PDZRN4) 0.198432646046791 17 0.0742800741233119 0.960160867313324 659 0.264865662731552 4 3 1 -7.18513303307312 LTS-023 chr12 42479179 42479226 48 * GXYLT1 0.02 1 NA 1.13410810696868 3 0.734076971441006 5 5 0 -5.76441033787382 LTS-023 chr12 42479227 43945603 1466377 * c(YAF2, PRICKLE1, GXYLT1, PPHLN1, ADAMTS20, ZCRB1) 0.129425330684983 21 0.0627414573961306 0.863029936524625 683 0.300528201553075 3 3 0 -7.97112432804473 LTS-023 chr12 43945604 44123962 178359 * c(ADAMTS20, PUS7L) 0.043 1 NA 0.811899379513486 39 0.0964806694014461 3 3 0 -5.84325377154441 LTS-023 chr12 44123963 44125625 1663 * PUS7L 0 1 NA 1.02523197253736 16 0.555950702250958 4 4 0 -5.76441762738791 LTS-023 chr12 44125626 44130217 4592 * PUS7L NA 0 NA 0.817 1 NA NA NA NA NA LTS-023 chr12 44130218 53242809 9112592 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, KRT71, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, KRT74, COL2A1, ASB8, KRT72, BCDIN3D, KRT80, GRASP, KRT78, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, C12orf80, LINC00592, TMPRSS12, KRT6C, RACGAP1, SENP1, NR4A1, KRT73, NA NA NA NA NA NA NA NA NA LTS-023 C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, LINC00938, FIGNL2, ASIC1, DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, KRT76, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, NCKAP5L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 ATG101, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.0353116030531643 359 0.0289376315112932 0.764617062440697 12501 0.52144580657563 3 3 0 -6.75394337153802 LTS-023 NA NA NA NA LTS-023 chr12 53242810 53295917 53108 * KRT8 0.031 1 NA 0.715980179311679 25 0.212162814838039 3 3 0 -5.7656802714445 LTS-023 chr12 53295918 53427913 131996 * c(EIF4B, KRT8, KRT18) 0.0471302503786832 2 0.0127279220613579 0.74808521257369 121 0.383222340500855 3 3 0 -6.96596668430155 LTS-023 chr12 53427914 53428470 557 * EIF4B NA 0 NA 1.287 1 NA NA NA NA NA LTS-023 chr12 53428471 53445705 17235 * c(EIF4B, TNS2, LOC283335) NA 0 NA 1.70270267075611 60 10.8777393496553 7 NA NA -5.76441017367905 LTS-023 chr12 53445706 53518179 72474 * c(TNS2, LOC283335, IGFBP6, SOAT2, SPRYD3) 0.0889983104351865 7 0.166886902108099 0.776870375824692 368 0.21448087661279 3 3 0 -6.78777084481806 LTS-023 chr12 53518180 53582629 64450 * c(ZNF740, CSAD, SOAT2) 0 1 NA 0.761440819453034 173 0.168574617305445 3 3 0 -5.76491155517924 LTS-023 chr12 53582630 54117812 535183 * c(LOC100652999, ATF7, SP7, AMHR2, ZNF740, ITGB7, PCBP2, ATP5G2, PFDN5, PRR13, CALCOCO1, RARG, C12orf10, SP1, TARBP2, MAP3K12, AAAS, MFSD5, NPFF, ESPL1) 0.0353508932679054 29 0.0232164796234996 0.750985511974738 1495 0.226847172692517 3 3 0 -6.74834816209203 LTS-023 chr12 54117813 54117952 140 * CALCOCO1 NA 0 NA 1.017 1 NA NA NA NA NA LTS-023 chr12 54117953 54577809 459857 * c(HOTAIR, LOC100240734, LOC100240735, HOXC13-AS, SMUG1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, LOC400043, MIR196A2, FLJ12825, CALCOCO1, MIR615) 0.0140572547992687 13 0.0249010863731706 1.10484366126528 525 0.531985454700677 6 6 0 -6.84234131692118 LTS-023 chr12 54577810 54624695 46886 * SMUG1 NA 0 NA 0.652 1 NA NA NA NA NA LTS-023 chr12 54624696 54970454 345759 * c(MIR3198-2, GTSF1, COPZ1, CBX5, ZNF385A, NCKAP1L, HNRNPA1, ITGA5, MIR148B, NFE2, PDE1B, GPR84) 0.0351184597815097 29 0.0330876206517496 0.759096585767803 1038 0.251871520840339 3 3 0 -6.74230917065467 LTS-023 chr12 54970455 55004105 33651 * c(PDE1B, PPP1R1A, GLYCAM1) 0 1 NA 0.709808430234985 81 0.312544174655537 3 3 0 -5.76494811385196 LTS-023 chr12 55004106 56638240 1634135 * c(BLOC1S1-RDH5, CDK2, RNF41, GDF11, DCD, MUCL1, OR2AP1, OR10P1, OR10A7, MYL6B, DGKA, METTL7B, ERBB3, ESYT1, OR6C74, OR6C3, BLOC1S1, OR6C6, ANKRD52, SLC39A5, ORMDL2, OR6C2, OR6C4, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, MMP19, OR9K2, MYL6, PA2G4, NEUROD4, RAB5B, RDH5, RPL41, RPS26, IKZF4, GLYCAM1, PMEL, SMARCC2, SUOX, NABP2, PYM1, SARNP, ZC3H10, DNAJC14, LACRT, CD63, TESPA1) 0.00532144005211005 19 0.0142237754999748 0.76744220770467 3060 0.288195810895401 4 4 0 -8.77186242626249 LTS-023 chr12 56638241 56638493 253 * ANKRD52 NA 0 NA 1.337 1 NA NA NA NA NA LTS-023 chr12 56638494 56646404 7911 * ANKRD52 NA 0 NA 1.32364852870179 49 0.233173355629476 6 NA NA -5.7650000330896 LTS-023 chr12 56646405 56646604 200 * ANKRD52 NA 0 NA 0.788 1 NA NA NA NA NA LTS-023 chr12 56646605 58024891 1378287 * c(MIR1228, CNPY2, DCTN2, PTGES3, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, SDR9C7, CS, DDIT3, DTX3, R3HDM2, NEMP1, STAC3, B4GALNT1, SNORD59A, GLS2, GLI1, ANKRD52, SPRYD4, APOF, INHBC, KIF5A, LRP1, MARS, MIP, MYO1A, NAB2, NACA, ATP5B, IL23A, PRIM1, NDUFA4L2, RBMS2, ARHGAP9, SHMT2, SLC26A10, STAT2, STAT6, TAC3, SNORD59B, PIP4K2C, INHBE, RDH16, HSD17B6, TIMELESS, COQ10A, ZBTB39, PAN2) 0 27 0 0.757706904315419 4445 0.243399754624636 0 0 0 -Inf LTS-023 chr12 58024892 58209520 184629 * c(AGAP2-AS1, TSFM, CDK4, AVIL, OS9, AGAP2, CYP27B1, B4GALNT1, METTL21B, METTL1, TSPAN31, MARCH9) NA 0 NA 0.738146211391992 791 0.170720299466802 3 NA NA -5.76494595332521 LTS-023 chr12 58209521 58209745 225 * AVIL NA 0 NA 0.928 1 NA NA NA NA NA LTS-023 chr12 58209746 58216989 7244 * c(CTDSP2, AVIL) 0.385 1 NA 0.973650839855624 77 0.161824080875065 4 4 0 -5.76441208758084 LTS-023 chr12 58216990 58220844 3855 * c(CTDSP2, MIR26A2) 0.218063979740684 15 0.0732038900865898 1.03028335203757 55 0.47388524161681 5 4 1 -6.73415285590943 LTS-023 chr12 58220845 58335415 114571 * c(LOC100506844, CTDSP2) NA 0 NA 0.929264930620166 28 0.118620303721692 4 NA NA -5.77664245796114 LTS-023 chr12 58335416 58339533 4118 * ATP23 0 1 NA 0.944338464865614 9 1.05706052071035 4 4 0 -5.76441269001957 LTS-023 chr12 58339534 68595306 10255773 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, TMBIM4, AVPR1A, IL26, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, ATP23, SLC16A7, HELB, USP15) 0.0432518014815641 100 0.0278627878988257 0.785412127804278 4309 0.448235759369367 3 3 0 -6.82287129105454 LTS-023 chr12 68595307 69968737 1373431 * c(LOC100130075, MIR1279, SNORA70G, LOC100507250, FRS2, CPSF6, CPM, LYZ, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B, YEATS4) 0.0484568146600768 20 0.0219829479369806 0.702389931100494 1001 0.205983309474864 3 3 0 -6.91371991790004 LTS-023 chr12 69968738 69968852 115 * FRS2 NA 0 NA 0.901 1 NA NA NA NA NA LTS-023 chr12 69968853 75444360 5475508 * c(MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.0365813219039696 69 0.0282614377934874 0.801139427542478 2789 0.264067397132174 3 3 0 -6.96010275194407 LTS-023 chr12 75444361 78225111 2780751 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2, NAV3) 0.0541541828724741 29 0.0737194956535167 0.708556542793259 1483 0.32136262413638 3 3 0 -6.80281463412882 LTS-023 chr12 78225112 78225210 99 * NAV3 NA 0 NA 0.757 1 NA NA NA NA NA LTS-023 chr12 78225211 88900985 10675775 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.0434736735232925 72 0.0258560478663621 0.807318135793433 3445 0.30507587720423 3 3 0 -7.13975376234409 LTS-023 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.658 1 NA NA NA NA NA LTS-023 chr12 88909243 93721898 4812656 * c(POC1B-GALNT4, KERA, DCN, EPYC, DUSP6, CCER1, LINC01619, POC1B, LINC00936, C12orf74, LUM, KITLG, LINC00615, PLEKHG7, ATP2B1, CLLU1OS, CLLU1, LOC643339, BTG1, LOC728084, EEA1, GALNT4) 0.0497079820434506 31 0.0214455549696665 0.731160533302638 1438 0.221188673815646 3 3 0 -6.90472105494212 LTS-023 chr12 93721899 93771144 49246 * LOC643339 NA 0 NA 1.681 1 NA NA NA NA NA LTS-023 chr12 93771145 93793319 22175 * c(NUDT4, LOC643339) NA 0 NA 1.23633214015083 47 0.451830810598509 5 NA NA -5.76444762835318 LTS-023 chr12 93793320 93793554 235 * NUDT4 NA 0 NA 0.844 1 NA NA NA NA NA LTS-023 chr12 93793555 93795204 1650 * NUDT4 NA 0 NA 0.679582770316201 46 0.252736214664418 3 NA NA -5.76454856379152 LTS-023 chr12 93795205 93796425 1221 * NUDT4 0.0461669570275944 2 0.00565685424949239 0.903047656525904 22 0.351484421705001 3 3 0 -7.55968923115526 LTS-023 chr12 93796426 93898182 101757 * c(NUDT4, MRPL42, UBE2N) 0 1 NA 1.03209464039335 208 0.292118912164714 4 4 0 -5.76656284825076 LTS-023 chr12 93898183 100729534 6831352 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, MIR5700, PLXNC1, METAP2, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, FAM71C, RMST, ELK3, UHRF1BP1L, HAL, APAF1, LTA4H, MIR135A2, MIR331, CEP83, CDK17, SLC25A3, VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, TMCC3, NTN4, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TMPO, NR2C1, USP44, CRADD, SOCS2) 0.0305613004951895 107 0.0175585776801507 1.06267959595339 4053 0.39499537398237 4 4 0 -6.9136568959021 LTS-023 chr12 100729535 107002727 6273193 * c(LOC100287944, MIR3652, MIR3922, CKAP4, C12orf45, SPIC, ANO4, ALDH1L2, SLC5A8, KIAA1033, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, HCFC2, IGF1, C12orf42, C12orf75, ARL1, ASCL1, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, NT5DC3, PMCH, PARPBP, APPL2, DRAM1, STAB2, SCYL2, POLR3B, CHPT1, RFX4, TDG, HSP90B1, C12orf73, TXNRD1, NUP37, GNPTAB, GLT8D2, SLC41A2, NUAK1, NR1H4) 0.0309167535704994 116 0.0386486062829721 1.18535639308218 5097 1.03837387331136 5 5 0 -6.75066292006123 LTS-023 chr12 107002728 107033062 30335 * c(LOC100287944, RFX4) NA 0 NA 1.02 1 NA NA NA NA NA LTS-023 chr12 107033063 122962383 15929321 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, LOC100287944, MIR1178, LOC100505978, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, MIR4497, ARPC3, CAMKK2, TRAFD1, ERP29, GCN1, SDS, RAB35, PRDM4, CIT, PWP1, FICD, SDSL, IQCD, ASCL4, BTBD11, ALKBH2, FOXN4, SPPL3, CMKLR1, COX6A1, CRY1, TMEM120B, WDR66, RAD9B, FAM109A, LINC00934, PPTC7, CCDC63, CCDC60, DAO, DTX1, PLBD2, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, NA NA NA NA NA NA NA NA NA LTS-023 CUX2, MED13L, SIRT4, ISCU, CORO1C, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, IFT81, FAM216A, ACACB, HPD, MMAB, TMEM119, LINC01089, ACADS, IL31, CFAP73, TMEM233, C12orf76, MSI1, MVK, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, GPN3, GLTP, MAPKAPK5-AS1, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, VPS29, PLA2G1B, TPCN1, SSH1, RHOF, VSIG10, TESC, PPP1CC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 RIC8B, SVOP, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PTPN11, PXN, TRPV4, RFC5, RFX4, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, TBX5, TBX3, HNF1A, MIR620, LOC728739, UNG, DDX54, B3GNT4, TCTN1, C12orf49, NAA25, SLC8B1, RNF34, MTERF2, ACAD10, BRAP, KCTD10, TCHP, COQ5, HVCN1, RASAL1, SRRM4, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 OASL, DYNLL1, SRSF9, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, TMEM263, BICDL1, CABP1, WSCD2, SART3, MLEC, GIT2, RBM19, RNF10) 0.0252489251030589 488 0.0226482095160782 1.05007417304989 17079 0.503740794849375 4 4 0 -6.94982709818446 LTS-023 NA NA NA NA LTS-023 chr12 122962384 122999396 37013 * c(ZCCHC8, RSRC2) 0.083 1 NA 0.955100409207263 102 0.242113749016095 4 4 0 -5.7646047687094 LTS-023 chr12 122999397 123186078 186682 * c(HCAR2, RSRC2, KNTC1) 0.357017276807886 2 0.0685893577750951 1.07372821771057 339 0.276138113548768 5 3 2 -6.82482555295776 LTS-023 chr12 123186079 123186177 99 * HCAR2 NA 0 NA 1.245 1 NA NA NA NA NA LTS-023 chr12 123186178 123186844 667 * HCAR2 0.33 1 NA 0.455472721491117 39 0.57914611979204 2 2 0 -5.76442922057463 LTS-023 chr12 123186845 123409310 222466 * c(ABCB9, HCAR1, HCAR2, VPS37B, CCDC62, DENR, HCAR3, HIP1R) 0.0192126993999842 5 0.0344412543325588 1.04376073222659 555 0.348045746601863 5 5 0 -6.77032757515694 LTS-023 chr12 123409311 123414349 5039 * ABCB9 0.048 1 NA 0.915121244029084 21 0.296014848404925 4 4 0 -5.76455780084863 LTS-023 chr12 123414350 133811705 10397356 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR4304, MIR3612, MIR3908, LRCOL1, LOC100507091, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, ZNF891, MPHOSPH9, ZNF268, TMED2, SNRNP35, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, RILPL2, DNAH10, EIF2B1, STX2, P2RX2, ANKLE2, ABCB9, RIMBP2, ATP6V0A2, GOLGA3, ADGRD1, GTF2H3, DDX51, EP400NL, RILPL1, KMT5A, LINC00944, NA NA NA NA NA NA NA NA NA LTS-023 LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, ARL6IP4, POLE, SBNO1, CHFR, PITPNM2, EP400, DHX37, FBRSL1, DDX55, PXMP2, RAN, SFSWAP, ANHX, AACS, SNORA49, UBC, ZNF10, ZNF140, NOC4L, OGFOD2, TCTN2, CCDC92, PUS1, CDK2AP1, ULK1, C12orf65, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.0270384409254966 282 0.0324963563316186 1.05679671783391 8280 0.472554272230965 4 4 0 -6.90566676430937 LTS-023 NA NA NA NA LTS-023 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.875034975034851 19 0.100106259334243 4 NA NA -5.76513885264777 LTS-023 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.083 1 NA 0.566138324608273 3 0.398923969364255 2 2 0 -5.77464467706147 LTS-023 chr13 19600476 23410563 3810088 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, LATS2, GJA3, GJB2, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.046360831052411 44 0.0269636040024953 0.559305033187494 1796 0.237772030120575 2 2 0 -7.05012411451208 LTS-023 chr13 23410564 23410905 342 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-023 chr13 23410906 24330711 919806 * c(SACS-AS1, LINC00327, SACS, MIPEP, TNFRSF19, SGCG, BASP1P1) 0.0507763400564376 11 0.0442026325830569 0.618168182081655 529 0.178339901420833 2 2 0 -7.25075088332706 LTS-023 chr13 24330712 24880117 549406 * c(MIR2276, SPATA13-AS1, SPATA13, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1) 0.0707693593611978 7 0.0504739442447194 0.502612122201675 341 0.159014573558858 2 2 0 -6.79409546117759 LTS-023 chr13 24880118 24896629 16512 * c(SPATA13, C1QTNF9) 0.0504412481601067 3 0.042453896562428 0.779971590799463 76 0.816627259235397 2 2 0 -6.74588711932387 LTS-023 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.414 1 NA NA NA NA NA LTS-023 chr13 24995032 25283939 288908 * c(PARP4, TPTE2P6, ATP12A) 0.0287939023899671 10 0.0526254057783247 0.5199261641511 254 0.410677357247299 3 3 0 -6.88768825507911 LTS-023 chr13 25283940 25603513 319574 * c(ATP12A, CENPJ, RNF17, TPTE2P1) 0.0260647103958917 11 0.0336981251164458 0.602490627386073 383 0.316660582486523 3 3 0 -6.90780531440036 LTS-023 chr13 25603514 25670851 67338 * PABPC3 0.333 1 NA 0.517870555213712 15 0.469894638646337 2 2 0 -5.764410740045 LTS-023 chr13 25670852 25739404 68553 * PABPC3 0.275601282202826 13 0.0946383128358185 0.69130385712965 132 0.553946572747925 4 3 1 -6.75640748456887 LTS-023 chr13 25739405 25739662 258 * character(0) 0.034 1 NA 0.773694958204796 8 0.554536357174686 3 3 0 -5.76441075462181 LTS-023 chr13 25739663 29296414 3556752 * c(PAN3-AS1, CDK8, CDX2, WASF3, AMER2, USP12, MTIF3, GSX1, LNX2, FLT1, FLT3, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, PDX1, RASL11A, SHISA2, ATP5EP2, POLR1D, POMP, ATP8A2, RNF6, RPL21, SNORA27, URAD, MTMR6, NUP58) 0.0387016916735685 49 0.035213633723318 0.58023585338213 2596 0.372321249351541 2 2 0 -7.07349967079447 LTS-023 chr13 29296415 29598705 302291 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-023 chr13 29598706 29675050 76345 * MTUS2 0.013285752526506 8 0.0289864500364271 0.940603926907672 69 0.829082278517898 7 7 0 -6.77050908840094 LTS-023 chr13 29675051 29855777 180727 * MTUS2 NA 0 NA 0.443 1 NA NA NA NA NA LTS-023 chr13 29855778 30091516 235739 * c(MTUS2-AS1, MTUS2, SLC7A1) 0.0440946694792303 12 0.0253030121574967 0.579584013536778 208 0.22707535537723 2 2 0 -6.89912949618923 LTS-023 chr13 30091517 30091714 198 * SLC7A1 0.083 1 NA 0.479959402664457 3 0.30423072384842 2 2 0 -5.76441716659769 LTS-023 chr13 30091715 31032946 941232 * c(LINC00426, LINC00297, HMGB1, LINC00544, UBL3, SLC7A1, KATNAL1) 0.078215174126978 10 0.030184801179107 0.549504850897842 331 0.150792574339918 2 2 0 -7.1324023529576 LTS-023 chr13 31032947 33016836 1983890 * c(TEX26-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, RXFP2, TEX26, B3GLCT, EEF1DP3, ALOX5AP, HMGB1, ZAR1L, BRCA2, MEDAG, N4BP2L1) 0.0818113576431575 40 0.0449979985309888 0.460595537038849 1405 0.202843554412228 2 2 0 -7.28630515437835 LTS-023 chr13 33016837 41239962 8223126 * c(MIR548F5, MIR4305, MINOS1P1, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, N4BP2L2, POSTN, EXOSC8, N4BP2L2-IT2, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.0697037620816319 85 0.0364897744780176 0.507423075108704 3391 0.183691110068641 2 2 0 -6.866192950053 LTS-023 chr13 41239963 41240056 94 * FOXO1 NA 0 NA 0.362 1 NA NA NA NA NA LTS-023 chr13 41240057 43181758 1941702 * c(MIR320D1, OR7E37P, VWA8-AS1, TPTE2P5, MIR5006, SLC25A15, MRPS31, WBP4, AKAP11, DGKH, ELF1, VWA8, FOXO1, SUGT1P3, RGCC, MIR621, NAA16, KBTBD7, TNFSF11, KBTBD6, MTRF1) 0.0761535875745627 31 0.0338845922418708 0.46117354292165 1375 0.127448898364494 2 2 0 -7.75105100159851 LTS-023 chr13 43181759 43182155 397 * TNFSF11 NA 0 NA 0.425723024079221 9 0.0565628951797122 2 NA NA -5.76720724597052 LTS-023 chr13 43182156 43358129 175974 * FAM216B NA 0 NA 0.886 1 NA NA NA NA NA LTS-023 chr13 43358130 43363650 5521 * FAM216B 0 1 NA 0.817280415525476 29 0.300739134622676 3 3 0 -5.76470651621119 LTS-023 chr13 43363651 43566331 202681 * c(FAM216B, EPSTI1) 0.0329738749577431 4 0.0225 0.843563662983016 158 0.260887519500588 4 4 0 -6.78135729224247 LTS-023 chr13 43566332 50234796 6668465 * c(LINC00462, TPT1-AS1, CPB2-AS1, LINC00563, LINC00441, MED4-AS1, SMIM2-IT1, LPAR6, RCBTB2, ARL11, LINC00284, CPB2, LACC1, LINC00330, CCDC122, ESD, ERICH6B, SPERT, FNDC3A, ZC3H13, LRCH1, SLC25A30, NUFIP1, SIAH3, MLNR, MED4, DNAJC15, GTF2F2, HTR2A, KCTD4, SERP2, LCP1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, RB1, TSC22D1-AS1, SNORA31, TPT1, RUBCNL, CDADC1, CAB39L, COG3, SETDB2, SUCLA2, TSC22D1, NA NA NA NA NA NA NA NA NA LTS-023 EPSTI1, ITM2B) 0.032089494244397 95 0.0235002465975482 0.999708940939679 3493 0.926835734064665 4 4 0 -6.73995848738354 LTS-023 NA NA NA NA LTS-023 chr13 50234797 50242696 7900 * EBPL 0.074 1 NA 0.970232915609618 24 0.237124527762665 4 4 0 -5.76441420255917 LTS-023 chr13 50242697 50591342 348646 * c(MIR3613, TRIM13, CTAGE10P, KCNRG, KPNA3, SPRYD7, EBPL, DLEU2) 0.0415666497841814 9 0.123363397236692 1.01049189050225 354 0.459076389460331 4 4 0 -6.73937259491255 LTS-023 chr13 50591343 50592060 718 * c(TRIM13, KCNRG, DLEU2) 0.009 1 NA 0.997611927372564 17 0.363271410445494 4 4 0 -5.764411556051 LTS-023 chr13 50592061 54886224 4294164 * c(MIR1297, MIR759, MIR4703, MIR5693, LINC00558, DLEU7-AS1, RNASEH2B-AS1, MRPS31P5, TRIM13, DLEU1, OLFM4, SUGT1, LECT1, WDFY2, HNRNPA1L2, ST13P4, DLEU7, FAM124A, TPTE2P3, INTS6, CKAP2, KCNRG, LINC00282, GUCY1B2, NEK5, MIR16-1, ALG11, NEK3, PCDH8, VPS36, ATP7B, THSD1, LINC00371, SERPINE3, RNASEH2B, DHRS12, CCDC70, DLEU2, UTP14C) 0.0218924681232139 18 0.024733613443792 1.00686300843191 1851 0.471876062990513 4 4 0 -6.80823270787695 LTS-023 chr13 58206621 70274916 12068296 * c(MIR3169, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, PCDH17, OR7E156P, LINC00550, PCDH9, KLHL1, PCDH20, TDRD3, DIAPH3) 0.0172063342054433 15 0.0154627047470757 1.74781213336018 679 0.655840714974304 7 7 0 -6.77195136343059 LTS-023 chr13 70274917 78272471 7997555 * c(MIR3665, LINC00381, MYCBP2-AS1, LINC00348, PIBF1, KLF12, KCTD12, CLN5, SLAIN1, DACH1, COMMD6, DIS3, MYCBP2, FBXL3, LINC00347, LMO7, MZT1, KLHL1, ATXN8OS, CTAGE11P, KLF5, BTF3P11, LMO7DN, ACOD1, UCHL3, BORA, SCEL, TBC1D4) 0.024931208323596 60 0.0155217634707831 1.33551702821646 2607 0.909706922825319 5 5 0 -6.79224235957271 LTS-023 chr13 78272472 110801403 32528932 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TNFSF13B, SOX21, SLITRK1, METTL21EP, SLAIN1, COL4A1, RNF113B, LINC00410, LINC00343, NA NA NA NA NA NA NA NA NA LTS-023 GPR180, DCT, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, MYO16, DOCK9, TGDS, NALCN, SLITRK5, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, GPR18, UBAC2, IPO5, LIG4, MIR19B1, MIR17HG, PCCA, POU4F1, NDFIP2, BIVM, ARGLU1, UGGT2, DNAJC3, RAP2A, RBM26, MIR4500HG, CCDC168, SLC10A2, SLC15A1, MIR622, MIR623, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, RNF219, SLITRK6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 STK24, TMTC4, ABHD13, ZIC5, IRS2, GGACT, CLDN10, TEX30, ITGBL1, TM9SF2) 0.0186861425563174 151 0.0128574146928059 1.62001039985483 6588 0.646115456784023 7 7 0 -6.7729471216476 LTS-023 NA NA NA NA LTS-023 chr13 110801404 110801459 56 * COL4A1 NA 0 NA 1.382 1 NA NA NA NA NA LTS-023 chr13 110801460 114765172 3963713 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, PROZ, ARHGEF7) 0.0248009006097878 138 0.015568170269055 1.26028582593626 3412 0.499647899702313 5 5 0 -6.75095790920219 LTS-023 chr13 114765173 114766250 1078 * RASA3 NA 0 NA 0.933 1 NA NA NA NA NA LTS-023 chr13 114766251 115064482 298232 * c(RASA3, UPF3A, CDC16) 0.0264091195065348 6 0.0145567853594123 1.08474490652877 232 0.333547838915053 5 5 0 -6.76161446269428 LTS-023 chr13 115064483 115092817 28335 * c(CHAMP1, UPF3A) NA 0 NA 0.996092196075241 87 0.191752411814074 4 NA NA -5.76458336476287 LTS-023 chr14 19434116 20215954 781839 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0 1 NA 1.09006520264196 27 0.891930185519279 5 5 0 -5.77052981617255 LTS-023 chr14 20215955 20404395 188441 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.294084230110253 8 0.125361192445783 1.22495974828696 165 0.682871072964147 7 5 2 -6.75605517602494 LTS-023 chr14 20404396 20404736 341 * OR4K1 0.373 1 NA 1.15931128112895 7 0.0846235360708996 5 5 0 -5.76445648460506 LTS-023 chr14 20404737 20698449 293713 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR4K1, OR4K15) 0.351179309532094 25 0.088036488647227 1.1649268690141 262 0.966019149972473 6 4 2 -6.76086854692299 LTS-023 chr14 20698450 20698481 32 * character(0) NA 0 NA 1.3 1 NA NA NA NA NA LTS-023 chr14 20698482 20710869 12388 * character(0) NA 0 NA 0.41 1 NA NA NA NA NA LTS-023 chr14 20710870 20754712 43843 * OR11H4 0.104 1 NA 0.43997937047048 31 0.163434068124293 2 2 0 -5.78988580282438 LTS-023 chr14 20754713 21168774 414062 * c(SNORD126, PARP2, RNASE11, KLHL33, ANG, APEX1, RNASE10, OR6S1, RNASE9, PNP, RNASE12, OSGEP, CCNB1IP1, RNASE4, TEP1, RPPH1, TMEM55B, TTC5) 0.0896843077577601 51 0.0747829696456326 0.415447386993453 1105 0.183873510575442 2 2 0 -7.18413356480889 LTS-023 chr14 21168775 21215654 46880 * EDDM3A NA 0 NA 0.661 1 NA NA NA NA NA LTS-023 chr14 21215655 21250306 34652 * c(EDDM3A, RNASE6, EDDM3B) 0 1 NA 0.757635888964704 53 0.270382603989075 3 3 0 -5.76446737459742 LTS-023 chr14 21250307 21269503 19197 * RNASE6 0.325 1 NA 0.726751723263391 11 0.216296723801524 3 3 0 -5.76459537068913 LTS-023 chr14 21269504 22447248 1177745 * c(SUPT16H, TPPP2, RNASE8, OR10G3, OR10G2, OR4E2, LINC00641, SLC39A2, HNRNPC, SNORD8, OR5AU1, RNASE13, ZNF219, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, RNASE1, RNASE2, RNASE3, SALL2, ECRP, TMEM253, METTL17, SNORD9, RNASE7, RAB2B, TOX4) 0.410105316211732 78 0.134537879643397 0.759227311362482 2104 0.277699495350904 3 2 1 -6.8922902305966 LTS-023 chr14 22447249 22991095 543847 * character(0) 0.399552071227861 22 0.1327105449638 0.945196569164674 666 0.274462516093563 4 2 2 -6.73804325625536 LTS-023 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.771 1 NA NA NA NA NA LTS-023 chr14 22992444 23497040 504597 * c(MIR4707, PRMT5, MRPL52, DAD1, REM2, LRP10, MMP14, OXA1L, HAUS4, RBM23, PSMB5, C14orf93, ABHD4, AJUBA, SLC7A7) 0.412415575810091 38 0.128147066673462 0.718380949768877 1239 0.19337372875684 3 2 1 -6.92901208840084 LTS-023 chr14 23497041 23502626 5586 * PSMB5 NA 0 NA 1.17 1 NA NA NA NA NA LTS-023 chr14 23502627 23512922 10296 * c(PSMB11, PSMB5) 0.490931079154385 2 0.014142135623731 0.810574241282385 52 0.327315118275315 4 2 2 -13.6055599128406 LTS-023 chr14 23512923 23516953 4031 * c(PSMB11, CDH24) 0 1 NA 0.83826677759434 9 0.122987804273432 3 3 0 -5.76653530069121 LTS-023 chr14 23516954 23595870 78917 * c(CEBPE, ACIN1, SLC7A8, C14orf119, CDH24) 0.329828992744923 14 0.214032143010713 0.772080229888951 388 0.292162366178797 3 2 1 -6.73510322413935 LTS-023 chr14 23595871 23598952 3082 * SLC7A8 0.5 1 NA 0.726630791180905 31 0.131292925392287 3 3 0 -5.76449180882063 LTS-023 chr14 23598953 23859590 260638 * c(BCL2L2-PABPN1, EFS, CMTM5, SLC7A8, MIR208A, MYH6, SLC22A17, HOMEZ, BCL2L2, IL25, PABPN1, PPP1R3E) 0.459093449771347 15 0.0283619463365969 0.803443427221865 691 0.200258370811345 4 2 2 -8.9088009053947 LTS-023 chr14 23859591 23859652 62 * MYH6 0 1 NA 0.739282163823432 3 0.486238624545603 3 3 0 -5.76441015118975 LTS-023 chr14 23859653 24434980 575328 * c(MIR208B, DHRS2, DHRS4, NGDN, DHRS4L2, MYH6, MYH7, DHRS4-AS1, THTPA, JPH4, ZFHX2, AP1G2) 0.287398509230073 35 0.225120632461052 0.803918193740477 1010 0.444133802710826 3 2 1 -6.77555514160993 LTS-023 chr14 24434981 24435564 584 * c(DHRS4, DHRS4L2) 0.472 1 NA 0.687603504504757 7 0.0440584027983637 3 3 0 -5.7656454235834 LTS-023 chr14 24435565 24907859 472295 * c(NEDD8-MDP1, IRF9, TM9SF1, DHRS4, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, LTB4R2, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, DHRS4L1, IPO4, DCAF11, CARMIL3, CPNE6, REC8) 0.413804769504957 100 0.13051128516552 0.760647246916042 2827 0.232946751210074 3 2 1 -6.91872866633751 LTS-023 chr14 24907860 24909026 1167 * c(KHNYN, SDR39U1) 0 1 NA 0.853081150583739 25 0.242786270891361 3 3 0 -5.76461956393732 LTS-023 chr14 24909027 25100282 191256 * c(CMA1, CTSG, KHNYN, GZMH, GZMB, SDR39U1) 0.252898009582584 9 0.242650182590311 0.726495440655262 167 0.561754940228072 4 3 1 -6.76629191272858 LTS-023 chr14 25100283 25101706 1424 * GZMB 0.488 1 NA 0.915413559468596 15 0.358933738413413 4 4 0 -5.76443822677388 LTS-023 chr14 25101707 37203697 12101991 * c(MIR4307, LINC00645, LOC100506071, MIR548AI, PTCSC3, LINC00609, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, COCH, SPTSSA, FOXG1, SCFD1, RALGAPA1, SFTA3, HECTD1, HEATR5A, NKX2-8, IGBP1P1, FAM177A1, GPR33, STXBP6, STRN3, GZMB, LINC01551, ARHGAP5, NFKBIA, NOVA1, PAX9, MBIP, PPP2R3C, G2E3, EAPP, PRKD1, PSMA6, SNX6, NPAS3, SRP54, MIR624, NKX2-1, NUBPL, BRMS1L, INSM2, ARHGAP5-AS1, SLC25A21, AKAP6, KIAA0391) 0.378241521905593 95 0.173070571861148 0.782842248204912 4424 0.336963557121011 3 2 1 -6.89911452009834 LTS-023 chr14 37203698 37283243 79546 * SLC25A21 0 1 NA 0.683683809884738 7 0.295638211976991 3 3 0 -5.76868593936793 LTS-023 chr14 37283244 37641947 358704 * c(SLC25A21-AS1, MIR4503, SLC25A21) 0.232911220882899 2 0.304055915910215 0.725441987429583 31 0.2500814791954 3 2 1 -6.81004948702682 LTS-023 chr14 37641948 37642030 83 * SLC25A21-AS1 NA 0 NA 1.239 1 NA NA NA NA NA LTS-023 chr14 37642031 38724167 1082137 * c(SLC25A21-AS1, MIPOL1, CLEC14A, FOXA1, SSTR1) 0.167485660074886 7 0.180925398990855 1.21237239628714 558 0.365509035389442 5 4 1 -6.77471257235365 LTS-023 chr14 38724168 39818242 1094075 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, LINC00639, MIA2, PNN, GEMIN2) 0.277081058752993 14 0.127978470888619 1.04996537179972 641 0.319596079065279 4 3 1 -6.77144596247205 LTS-023 chr14 39818243 39819318 1076 * MIA2 NA 0 NA 0.59 1 NA NA NA NA NA LTS-023 chr14 39819319 39867211 47893 * c(FBXO33, MIA2) 0 1 NA 0.661262058950027 35 0.314331629190006 3 3 0 -5.76872619055538 LTS-023 chr14 39867212 39871017 3806 * FBXO33 0.461 1 NA 0.745459696616599 57 0.178203647830931 3 3 0 -5.7644104264381 LTS-023 chr14 39871018 45606287 5735270 * c(SNORD127, C14orf28, LRFN5, FKBP3, FAM179B, FBXO33, KLHL28, PRPF39, FANCM, FSCB) 0.441896809074716 12 0.136734535993411 0.829098411144658 645 0.201603631486185 3 2 1 -7.85011694407914 LTS-023 chr14 45606288 45618220 11933 * FANCM 0 1 NA 0.822376443155368 13 0.387867113114656 3 3 0 -5.76485034398195 LTS-023 chr14 45618221 47426849 1808629 * c(LINC00871, RPL10L, MDGA2, MIS18BP1, FANCM) 0.261393354533506 13 0.229744730136822 0.833355993370945 397 0.275315998080522 3 2 1 -6.96994665397197 LTS-023 chr14 47426850 47812389 385540 * MDGA2 0.437 1 NA 0.845803184908684 55 0.215174078771315 3 3 0 -5.84059228518967 LTS-023 chr14 47812390 53102684 5290295 * c(MIR548Y, LINC00648, NA, FRMD6-AS2, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, KLHDC2, ATP5S, LINC01588, LINC00640, GPR137C, ARF6, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, DNAAF2, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, SOS2, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.423799432433652 107 0.1220985831608 0.777913132002004 3219 0.230173945866802 3 2 1 -7.09774719200786 LTS-023 chr14 53102685 53107124 4440 * GPR137C 0 1 NA 0.839243358789117 50 0.448051090836748 3 3 0 -5.76459014953901 LTS-023 chr14 53107125 53619463 512339 * c(FERMT2, ERO1A, PSMC6, GNPNAT1, STYX, DDHD1) 0.290771968951816 9 0.219180544554281 0.77907049115124 689 0.308325496852459 3 2 1 -6.76937189714589 LTS-023 chr14 53619464 53619544 81 * DDHD1 0.472 1 NA 0.786567254708054 3 0.466684404424803 3 3 0 -5.76441072287971 LTS-023 chr14 53619545 55512071 1892527 * c(MIR4308, MIR5580, CNIH1, CDKN3, CGRRF1, WDHD1, SOCS4, SAMD4A, GCH1, GMFB, BMP4, DDHD1) 0.442738980635379 23 0.102008311681813 0.783948660497546 875 0.209126492623403 3 2 1 -7.34314995552312 LTS-023 chr14 55512072 55514214 2143 * SOCS4 0 1 NA 0.811545653963285 43 0.308381329358294 3 3 0 -5.76450306512633 LTS-023 chr14 55514215 55834709 320495 * c(SOCS4, ATG14, LGALS3, FBXO34, MAPK1IP1L, DLGAP5) 0.334640499442723 9 0.22827560097391 0.760151585720012 349 0.197724928042096 3 2 1 -6.73491968996945 LTS-023 chr14 55834710 55834840 131 * ATG14 0.409 1 NA 0.964416429340378 3 0.219850706920249 4 4 0 -5.76441040570241 LTS-023 chr14 55834841 58056257 2221417 * c(KTN1-AS1, OTX2-AS1, EXOC5, NAA30, ATG14, SLC35F4, TBPL2, KTN1, OTX2, TMEM260, C14orf105, AP5M1, PELI2, RPL13AP3, LINC00520) 0.444024800841437 31 0.0862979086204183 0.841897611612409 1335 1.04154610961123 4 2 2 -6.93523134917778 LTS-023 chr14 58056258 58469162 412905 * SLC35F4 0 1 NA 0.856721881716793 55 0.396953183171051 4 4 0 -5.79142212950597 LTS-023 chr14 58469163 59836032 1366870 * c(C14orf37, DAAM1, TIMM9, PSMA3-AS1, TOMM20L, DACT1, ACTR10, PSMA3, ARID4A, KIAA0586) 0.306273389347402 13 0.211371255596185 0.806065025218852 882 0.23245092267865 3 2 1 -6.83538658912194 LTS-023 chr14 59836033 59928588 92556 * DAAM1 0.379 1 NA 0.944583119111117 69 1.37519536734975 4 4 0 -5.76444356168848 LTS-023 chr14 59928589 60620711 692123 * c(L3HYPDH, LRRC9, JKAMP, DHRS7, RTN1, PCNX4, GPR135, CCDC175) 0.442602799086822 17 0.118353005130962 0.837651235527255 731 0.251689301884327 4 2 2 -6.97324362170594 LTS-023 chr14 60620712 60632191 11480 * c(DHRS7, PCNX4) 0.321 1 NA 0.642845712442009 15 0.12824931077509 3 3 0 -5.77383093824092 LTS-023 chr14 60632192 61503905 871714 * c(SLC38A6, C14orf39, MNAT1, SIX6, DHRS7, SIX4, PPM1A, TRMT5, PCNX4, SIX1) 0.233404306042587 9 0.234884782629934 0.799268520900676 944 0.210504048120298 3 2 1 -6.90863227846055 LTS-023 chr14 61503906 61744474 240569 * c(SLC38A6, TMEM30B, PRKCH) 0.469 1 NA 0.799532915661775 77 0.272604331084527 3 3 0 -5.77338122312478 LTS-023 chr14 61744475 62263076 518602 * c(HIF1A-AS2, TMEM30B, HIF1A, FLJ22447, PRKCH, SNAPC1) 0.455945279295107 9 0.0413575198052838 0.756699474178402 431 0.181470825085468 4 2 2 -8.32525756013747 LTS-023 chr14 62263077 62462697 199621 * c(SNAPC1, SYT16) 0 1 NA 0.879353509609121 9 1.40149700717166 4 4 0 -5.76508613607731 LTS-023 chr14 62462698 62595081 132384 * c(LINC00643, SYT16) 0.20233256658452 4 0.278858835255403 0.854630683627828 81 0.697180446734303 5 4 1 -6.75373937397753 LTS-023 chr14 63173318 63175181 1864 * KCNH5 NA 0 NA 1.28965240730667 39 0.300308170553091 5 NA NA -5.76446446838735 LTS-023 chr14 63175182 63178970 3789 * KCNH5 NA 0 NA 0.906 1 NA NA NA NA NA LTS-023 chr14 63178971 63759229 580259 * c(KCNH5, RHOJ) 0.255193256298138 9 0.241712639305436 0.828193541625954 151 0.546672415519226 4 3 1 -6.76567688714701 LTS-023 chr14 63759230 63838879 79650 * c(GPHB5, RHOJ) 0.487 1 NA 0.755282968902353 43 0.268469240532038 3 3 0 -5.76449148560606 LTS-023 chr14 63838880 65220374 1381495 * c(WDR89, PPP1R36, ESR2, ZBTB1, SYNE2, PLEKHG3, HSPA2, TEX21P, MTHFD1, PPP2R5E, SPTB, ZBTB25, SGPP1, AKAP5) 0.3994716395815 68 0.156402204182748 0.80479247745943 1968 0.25918780301807 3 2 1 -6.88522223172966 LTS-023 chr14 65220375 65233540 13166 * SPTB 0 1 NA 0.94269806007451 19 0.368183957962029 4 4 0 -5.76448455254556 LTS-023 chr14 65233541 67939165 2705625 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, FAM71D, TMEM229B, EIF2S1, FNTB, FUT8, PLEK2, GPX2, RAB15, MAX, LINC00238, ATP6V1D, MPP5, FUT8-AS1, SPTB, CHURC1) 0.305527338206378 21 0.216949972288983 0.802759068196101 1419 0.238333096241828 3 2 1 -6.89326877732725 LTS-023 chr14 67939166 67939342 177 * TMEM229B 0 1 NA 0.972307914074308 7 0.632183517659232 4 4 0 -5.76441014076637 LTS-023 chr14 67939343 68242860 303518 * c(VTI1B, RDH12, TMEM229B, ZFYVE26, ARG2, RDH11, PIGH, PLEKHH1) 0.123675739050759 18 0.219164992910928 0.803761235601413 697 0.374539547321497 3 3 0 -6.82815694518627 LTS-023 chr14 68242861 69012355 769495 * c(ZFYVE26, RAD51B) 0.414 1 NA 0.826620036544572 249 0.238040659857855 3 3 0 -5.84692630041144 LTS-023 chr14 69012356 69966850 954495 * c(ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, GALNT16, RAD51B, ZFP36L1, ACTN1, DCAF5) 0.455230868982749 20 0.0334794123698666 0.78245411358256 862 0.216276076703543 4 2 2 -8.71356288767887 LTS-023 chr14 69966851 69966950 100 * PLEKHD1 0 1 NA 0.965161417601634 3 1.31735454605053 4 4 0 -5.76441013973582 LTS-023 chr14 69966951 73424543 3457593 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, PLEKHD1, MAP3K9, COX16, SYNJ2BP, CCDC177, SMOC1, SRSF5, SLC8A3, SLC10A1, DPF3, ADAM21, ADAM20, RGS6, SUSD6) 0.271155195116811 53 0.214551102576603 0.823744906381516 2154 0.408459502986126 3 2 1 -6.91165043914959 LTS-023 chr14 73424544 73425594 1051 * DCAF4 0.416 1 NA 0.8450379927218 13 0.405016998693597 3 3 0 -5.7644685840381 LTS-023 chr14 73425595 73989983 564389 * c(DCAF4, HEATR4, ZFYVE1, PSEN1, RBM25, NUMB, PAPLN) 0.374272129427035 21 0.163920378465249 0.816635796180836 860 0.25070452752181 3 2 1 -6.801064575909 LTS-023 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.07 1 NA NA NA NA NA LTS-023 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.0907978886252869 43 0.107085278733228 0 NA NA -5.95690043483382 LTS-023 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.725 1 NA NA NA NA NA LTS-023 chr14 74035793 74667520 631728 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, ALDH6A1, COQ6, ZNF410, ACOT1, ACOT6, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.406019527755192 36 0.145428854039704 0.792467774688227 1257 1.10188544609748 4 2 2 -6.74913332502855 LTS-023 chr14 74667521 74726429 58909 * VSX2 0 1 NA 0.829933228506159 31 0.537229980188097 3 3 0 -5.76576847042005 LTS-023 chr14 74726430 74872881 146452 * c(VSX2, VRTN, ABCD4, SYNDIG1L) 0.120676104761518 3 0.249415316289918 0.851205946918391 239 0.407767516948154 3 3 0 -6.80563025325465 LTS-023 chr14 74872882 74943071 70190 * SYNDIG1L 0.196428960544723 3 0.20623853503488 1.20435084337796 62 0.974007047976654 6 5 1 -6.73773617582117 LTS-023 chr14 74943072 74943144 73 * character(0) NA 0 NA 0.773 1 NA NA NA NA NA LTS-023 chr14 74943145 74971922 28778 * c(MIR4709, NPC2, ISCA2, LTBP2) 0.234766550148186 5 0.240188051326455 0.822757737471584 215 0.419067259630113 4 3 1 -6.74548337872421 LTS-023 chr14 74971923 75130554 158632 * c(LTBP2, AREL1) 0.463 1 NA 0.842395889794499 223 0.188672993844454 3 3 0 -5.80281571093812 LTS-023 chr14 75130555 77597958 2467404 * c(BATF, TMED10, C14orf1, IFT43, JDP2, LRRC74A, DLST, ESRRB, VASH1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, FCF1, PGF, FLVCR2, GPATCH2L, YLPM1, IRF2BPL, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, CIPC, EIF2B2, NEK9, ACYP1, AREL1) 0.40846432885388 61 0.140735191011598 0.788439656526127 2879 0.232083228719682 3 2 1 -6.94934856367166 LTS-023 chr14 77597959 77598148 190 * ZDHHC22 0 1 NA 1.15190306018945 5 1.37650143479765 5 5 0 -5.76441026544254 LTS-023 chr14 77598149 77732320 134172 * c(ZDHHC22, TMEM63C, NGB) 0.171844776410322 10 0.236659647783244 0.871739672351795 232 0.609023813577559 5 4 1 -6.7760745117598 LTS-023 chr14 77732321 77745193 12873 * c(MIR1260A, POMT2, NGB) 0.474 1 NA 0.824735641988847 104 0.24908283273163 3 3 0 -5.76563110657314 LTS-023 chr14 77745194 88652483 10907290 * c(DIO2-AS1, LINC00911, AHSA1, NOXRED1, ISM2, CEP128, SAMD15, DIO2, SNW1, FLRT2, GALC, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, KCNK10, ADCK1, VIPAS39, SEL1L, SNORA79, TSHR, SLIRP, GPR65, STON2, ALKBH1, NRXN3, SPTLC2) 0.353893580426344 86 0.188878752211401 0.812642052122279 2943 0.318744744057903 3 2 1 -7.16187474709463 LTS-023 chr14 88652484 88654261 1778 * KCNK10 NA 0 NA 0.727 1 NA NA NA NA NA LTS-023 chr14 88654262 90651033 1996772 * c(PTPN21, FOXN3, TTC8, EML5, FOXN3-AS2, FOXN3-AS1, KCNK10, TDP1, SPATA7, KCNK13, ZC3H14, EFCAB11) 0.378566151351048 23 0.179279597035032 0.755138110951168 1347 0.361216276392385 3 2 1 -6.76116913205984 LTS-023 chr14 90651034 90730352 79319 * c(KCNK13, PSMC1) 0.476 1 NA 0.77071258696854 47 0.196808405730402 3 3 0 -5.76561359632009 LTS-023 chr14 90730353 91846296 1115944 * c(SNORA11B, TTC7B, LINC00642, CCDC88C, NRDE2, PSMC1, C14orf159, CALM1, GPR68, RPS6KA5) 0.438721698547675 30 0.0887387033445067 0.739885400165377 1030 0.207217579450401 3 2 1 -7.39296892823722 LTS-023 chr14 91846297 91874997 28701 * CCDC88C 0 1 NA 0.942221215297017 7 1.76479885539401 4 4 0 -5.76441739727598 LTS-023 chr14 91874998 92335945 460948 * c(FBLN5, TC2N, CCDC88C, PPP4R3A, CATSPERB) 0.282982399862383 12 0.227084068667144 0.704540632503002 402 0.224407743528695 3 2 1 -6.78987942489419 LTS-023 chr14 92335946 92353664 17719 * FBLN5 0.464 1 NA 0.659338375788294 41 0.205486762970508 3 3 0 -5.76832752196134 LTS-023 chr14 92353665 92588192 234528 * c(FBLN5, ATXN3, NDUFB1, TRIP11) 0.431151458878526 23 0.137407259417803 0.730847100853962 497 0.233436336076689 4 2 2 -6.98054051016698 LTS-023 chr14 92588193 92628714 40522 * CPSF2 0 1 NA 0.806763590739666 81 0.333717824546057 3 3 0 -5.76570471559321 LTS-023 chr14 92628715 92961978 333264 * c(SLC24A4, CPSF2) 0.233259412553585 10 0.23419754244844 0.781886395706376 175 0.512747471942651 4 3 1 -6.78160718886696 LTS-023 chr14 92961979 93118038 156060 * c(SLC24A4, RIN3) 0.481 1 NA 0.735717565416216 58 0.165370822923544 3 3 0 -5.76519790974903 LTS-023 chr14 93118039 93688762 570724 * c(CHGA, TMEM251, ITPK1-AS1, ITPK1, UBR7, LGMN, MOAP1, RIN3, GON7, GOLGA5) 0.404459939186147 24 0.161446899782174 0.772270813695634 683 0.245540575529448 3 2 1 -6.8322989671866 LTS-023 chr14 93688763 93693284 4522 * UBR7 NA 0 NA 1.195 1 NA NA NA NA NA LTS-023 chr14 93693285 93706912 13628 * c(UBR7, BTBD7) 0.342278783084665 3 0.0119303534454488 1.13974106152403 122 0.298658606126028 3 2 1 -6.76399232720126 LTS-023 chr14 93706913 94007075 300163 * c(COX8C, BTBD7, UNC79) 0.457324052481874 7 0.0535372589440111 0.766352465795624 257 0.237849066832607 4 2 2 -7.59969872426712 LTS-023 chr14 94007076 94008783 1708 * UNC79 0 1 NA 0.986239931864802 5 0.970761453705286 4 4 0 -5.76441023101976 LTS-023 chr14 94008784 94419620 410837 * c(PRIMA1, FAM181A-AS1, ASB2, UNC79, FAM181A) 0.235718135248679 10 0.234914641708193 0.767738769046701 460 0.328827931975388 3 2 1 -6.85161254208749 LTS-023 chr14 94419621 94421488 1868 * ASB2 0.433 1 NA 0.834555430485571 11 0.174201189850858 3 3 0 -5.7648639655027 LTS-023 chr14 94421489 94780608 359120 * c(IFI27L1, LINC00521, IFI27, SERPINA10, ASB2, DDX24, PPP4R4, OTUB2, IFI27L2, SERPINA6) 0.445684526167728 19 0.110373793397735 0.744112243343464 579 0.209816626360839 4 2 2 -7.19143658841024 LTS-023 chr14 94780609 94830714 50106 * SERPINA6 0.015 1 NA 0.803529765075249 15 0.542753666829753 3 3 0 -5.76495390506615 LTS-023 chr14 94830715 94933499 102785 * c(SERPINA11, SERPINA9, SERPINA1) 0.211226932832436 10 0.243764549423323 0.843542619458738 162 0.719539646557133 5 4 1 -6.74844964791562 LTS-023 chr14 94933500 94933640 141 * SERPINA9 0.404 1 NA 0.837016692621176 3 0.269412323400397 3 3 0 -5.76442512956097 LTS-023 chr14 94933641 95111377 177737 * c(SERPINA3, SERPINA12, SERPINA9, SERPINA13P, SERPINA5, SERPINA4) 0.334719372826109 29 0.206637619787226 0.837011334619993 325 0.526336538677317 3 2 1 -6.73846818460738 LTS-023 chr14 95111378 95556747 445370 * c(GSC, DICER1, SERPINA13P) 0.466 1 NA 0.739130604357792 109 0.217342988972705 3 3 0 -5.76503863246562 LTS-023 chr14 95556748 95983975 427228 * c(MIR3173, SYNE3, DICER1, DICER1-AS1, LINC00341, CLMN) 0.472945568377358 12 0.0259276382310928 0.766448215235901 502 0.164419248637591 4 2 2 -10.2569533201213 LTS-023 chr14 95983976 96009694 25719 * c(SNHG10, GLRX5) 0 1 NA 0.845090770159815 37 0.116176221381204 3 3 0 -5.78177718345826 LTS-023 chr14 96009695 96559139 549445 * c(TUNAR, TCL6, GLRX5, C14orf132, TCL1A, TCL1B) 0.329824679659267 11 0.215940016923892 0.812268016703143 258 0.367343934389529 3 2 1 -6.75158504619014 LTS-023 chr14 96559140 96559349 210 * C14orf132 0.434 1 NA 0.815487488572229 5 0.157253934767942 3 3 0 -5.76444919962818 LTS-023 chr14 96559350 100144856 3585507 * c(LOC100129345, MIR5698, PAPOLA, AK7, C14orf177, CCDC85C, LINC01550, GSKIP, ATG2B, C14orf132, BDKRB1, BDKRB2, BCL11B, VRK1, SETD3, HHIPL1, CCNK) 0.413735974095894 45 0.126113336873519 0.792760489592955 1854 0.44551590166488 3 2 1 -6.96742318674168 LTS-023 chr14 100144857 100145946 1090 * character(0) 0 1 NA 0.768161548675687 19 0.626205359324546 3 3 0 -5.76441143954805 LTS-023 chr14 100145947 100741146 595200 * c(CYP46A1, DEGS2, EML1, EVL, YY1) 0.320142733949589 10 0.222438605761979 0.817894499984448 546 0.252250245942295 3 2 1 -6.78384458638784 LTS-023 chr14 100741147 100745394 4248 * YY1 0.419 1 NA 0.700149412654572 43 0.219219346354669 3 3 0 -5.76463224194368 LTS-023 chr14 100745395 101347727 602333 * c(MIR665, MIR2392, SLC25A29, SLC25A47, LINC00523, RTL1, MIR337, MIR345, MEG3, MIR431, MIR493, BEGAIN, WARS, MIR770, WDR25, DLK1) 0.45117422104946 24 0.103434630690533 0.783028221024604 576 0.219059815076891 4 2 2 -7.24281013729389 LTS-023 chr14 101347728 101348302 575 * c(RTL1, MIR433) 0 1 NA 0.872072117853437 13 0.50592465487487 4 4 0 -5.76442750192477 LTS-023 chr14 101348303 101507308 159006 * c(MIR543, MIR1197, MIR1193, RTL1, MIR127, MIR136, MIR299, MIR323A, MIR376C, MIR376A1, MIR379, MIR380, MIR433, MIR329-1, MIR329-2, MIR376B, MIR432, MIR494, MIR495, MIR376A2, MIR411, MIR654, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, NA NA NA NA NA NA NA NA NA LTS-023 SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MEG8) 0.2281468258682 14 0.237268904340693 0.843890906278836 343 0.396409209015908 4 3 1 -6.76054077700042 LTS-023 NA NA NA NA LTS-023 chr14 101507309 101510613 3305 * c(MIR300, MIR1185-1, MIR1185-2) 0.398 1 NA 0.91293842566773 10 0.343228203969312 4 4 0 -5.76448752172425 LTS-023 chr14 101510614 102568367 1057754 * c(MIR541, MIR889, MIR1247, MIR1185-2, MEG9, LINC00239, DIO3, DYNC1H1, HSP90AA1, MIR134, MIR154, MIR369, MIR377, MIR381, MIR382, PPP2R5C, MIR323B, MIR409, MIR412, MIR410, MIR485, MIR496, MIR487A, MIR539, MIR487B, MIR655, MIR656, MIR668) 0.460815996738456 22 0.024283365050623 0.810978332033754 973 0.282580900424843 4 2 2 -9.61517371920808 LTS-023 chr14 102568368 102659676 91309 * c(HSP90AA1, WDR20) 0 1 NA 0.729813246222411 23 0.446510351583417 3 3 0 -5.76455837747851 LTS-023 chr14 102659677 102843075 183399 * c(CINP, ZNF839, MOK, WDR20, TECPR2) 0.358053335101794 7 0.235456901323687 0.795692021966921 359 0.195726512421491 3 2 1 -6.74784560844477 LTS-023 chr14 102843076 103059220 216145 * c(MIR4309, ANKRD9, RCOR1, TECPR2) 0.384917411024069 9 0.147294772480221 0.83501782199169 259 0.197884431453479 4 2 2 -6.81744993073694 LTS-023 chr14 103059221 103193617 134397 * RCOR1 0 1 NA 0.80349092268974 69 0.249217453844906 3 3 0 -5.7713114809126 LTS-023 chr14 103193618 103573194 379577 * c(RCOR1, TRAF3, AMN, EXOC3L4, CDC42BPB) 0.23574166705792 18 0.231500031762163 0.854091623289395 636 0.376011800947181 4 3 1 -6.77163777982897 LTS-023 chr14 103573195 103805501 232307 * c(LINC00605, EIF5, SNORA28, TNFAIP2, EXOC3L4) 0.494 1 NA 0.862398318617369 195 0.239565322838996 4 4 0 -5.80197949597961 LTS-023 chr14 103805502 104201133 395632 * c(CKB, TRMT61A, EIF5, PPP1R13B, KLC1, MARK3, XRCC3, ZFYVE21, APOPT1, BAG5) 0.470209698827253 9 0.0262889922041738 0.808135509380506 793 0.441108335694475 4 2 2 -9.60031656685397 LTS-023 chr14 104201134 104204010 2877 * PPP1R13B 0 1 NA 0.966370096758281 13 0.504098840531935 4 4 0 -5.76441094683058 LTS-023 chr14 104204011 104605213 401203 * c(MIR203B, TDRD9, LINC00637, PPP1R13B, KIF26A, ASPG, MIR203A, RD3L, C14orf2) 0.289911484456156 15 0.236626830986803 0.865218138397985 470 0.40480984318157 4 3 1 -6.7612285927671 LTS-023 chr14 104605214 104639644 34431 * KIF26A 0.474 1 NA 0.844670367043422 49 0.24253301023659 3 3 0 -5.76971267202305 LTS-023 chr14 104639645 105185666 546022 * c(MIR4710, KIF26A, TMEM179, C14orf180, INF2) 0.46393795542496 16 0.0323264597504892 0.807231328799035 478 0.213369918583746 4 2 2 -8.85393433013424 LTS-023 chr14 105185667 105196383 10717 * c(ADSSL1, INF2) 0 1 NA 0.876542447229334 21 0.359933532223725 4 4 0 -5.76499430723762 LTS-023 chr14 105196384 105349472 153089 * c(ZBTB42, SIVA1, ADSSL1, LINC00638, AKT1, CEP170B) 0.367996719368999 23 0.174478919301537 0.837177363708219 425 0.863327933830392 3 2 1 -6.74959010826447 LTS-023 chr14 105349473 105350355 883 * CEP170B 0.404 1 NA 0.883269086072362 11 0.114530662825606 4 4 0 -5.76482045869703 LTS-023 chr14 105350356 105409784 59429 * c(AHNAK2, PLD4, CEP170B) 0.134676822020611 9 0.22715162581657 0.815773628455653 317 0.303383764827539 3 3 0 -6.84054539759454 LTS-023 chr14 105409785 105411091 1307 * AHNAK2 0.466 1 NA 0.803804165947684 17 0.218755890676988 3 3 0 -5.76449820908728 LTS-023 chr14 105411092 105516226 105135 * c(AHNAK2, C14orf79, GPR132, CDCA4) 0.433379320629999 18 0.0722380776964687 0.829944195982295 249 0.331746781785489 4 2 2 -6.89895533335103 LTS-023 chr14 105516227 105522134 5908 * GPR132 0 1 NA 0.832015203215573 59 0.29480509366285 3 3 0 -5.76488430401006 LTS-023 chr14 105522135 105771880 249746 * c(PACS2, NUDT14, BRF1, GPR132, JAG2, BTBD6) 0.308574113677118 15 0.210764865600101 0.835361219755895 489 0.355313129368693 3 2 1 -6.76150255049546 LTS-023 chr14 105771881 105772055 175 * c(PACS2, BRF1) 0.486 1 NA 0.652715687937912 5 0.934108505474605 3 3 0 -5.76441231117105 LTS-023 chr14 105772056 105962227 190172 * c(CRIP1, CRIP2, PACS2, C14orf80, BRF1, TEX22, MTA1) 0.437028598391235 29 0.0913067422607225 0.819928117695429 599 0.285499475378452 4 2 2 -6.89046588837313 LTS-023 chr14 105962228 105965590 3363 * C14orf80 0.457 1 NA 0.927838492654789 25 0.318614176290593 4 4 0 -5.76446309417125 LTS-023 chr14 105965591 106068019 102429 * TMEM121 0.326084923951597 4 0.234178528762424 0.896638253616639 97 0.43927392206714 3 2 1 -6.74587988479271 LTS-023 chr14 106068020 106091131 23112 * character(0) NA 0 NA 0.314 1 NA NA NA NA NA LTS-023 chr14 106091132 106188680 97549 * ELK2AP 0 2 0 0.409627732041609 53 0.356622746076113 0 0 0 -Inf LTS-023 chr14 106188681 106208128 19448 * character(0) NA 0 NA 1.169 1 NA NA NA NA NA LTS-023 chr14 106208129 106321663 113535 * character(0) 0.290486202241834 3 0.262439199307827 0.833657179028111 99 0.390413089611625 4 3 1 -6.7498693679949 LTS-023 chr14 106321664 106321989 326 * character(0) 0.473 1 NA 0.703182839768411 9 0.247653207350745 3 3 0 -5.76442173315442 LTS-023 chr14 106321990 106357644 35655 * FAM30A 0.438226037060457 12 0.0598667080043051 0.837697348499623 88 0.725463291961269 4 2 2 -7.00942470554329 LTS-023 chr14 106357645 106361479 3835 * FAM30A 0 1 NA 0.76098039610832 11 1.3782185207394 3 3 0 -5.76441055326601 LTS-023 chr14 106361480 106471689 110210 * c(ADAM6, FAM30A) 0.266518763121938 14 0.216444965469107 0.856687095226185 126 0.71795953389969 4 3 1 -6.73527007144073 LTS-023 chr14 106471690 106518848 47159 * character(0) 0.489 1 NA 0.708674360044322 17 0.119796303831816 3 3 0 -5.76986419191074 LTS-023 chr14 106518849 106552698 33850 * character(0) NA 0 NA 0.644920751983059 17 0.080900765283954 3 NA NA -5.83062634305607 LTS-023 chr14 106552699 106578978 26280 * character(0) NA 0 NA 1.173 1 NA NA NA NA NA LTS-023 chr14 106578979 106780713 201735 * LINC00226 0.109631084266468 9 0.0915229175914123 1.09277444932914 67 1.06183897488903 9 8 1 -6.7924351118622 LTS-023 chr14 106780714 106780762 49 * character(0) NA 0 NA 1.14674892837949 3 0.0288675134594813 5 NA NA -5.76450084379705 LTS-023 chr14 106780763 106791085 10323 * character(0) NA 0 NA 0.166 1 NA NA NA NA NA LTS-023 chr14 106791086 106866565 75480 * character(0) 0.435 1 NA 0.632347752130095 50 0.34770370273835 3 3 0 -5.7747862193822 LTS-023 chr14 106866566 107013122 146557 * LINC00221 0.372382144912667 7 0.18333121210894 0.734530079156745 57 0.820825305992325 3 2 1 -6.75125626772995 LTS-023 chr14 107013123 107013129 7 * character(0) 0.465 1 NA 2.02 1 NA NA NA NA NA LTS-023 chr14 107013130 107013201 72 * character(0) 0.412 1 NA 1.21677461212703 2 1.59735421870041 5 5 0 -5.76441013573087 LTS-023 chr14 107013202 107034789 21588 * character(0) 0.256 1 NA 1.04333243424818 6 0.923189471343776 4 4 0 -5.76447571610271 LTS-023 chr14 107034790 107035042 253 * character(0) 0.165339144476417 12 0.130019578945215 1.70547761863635 18 0.725069473795488 19 16 3 -6.73341043592167 LTS-023 chr14 107035043 107078567 43525 * character(0) 0.45 1 NA 0.845585685674299 11 0.383227679774641 3 3 0 -5.76714356796184 LTS-023 chr14 107078568 107179263 100696 * character(0) 0.319380523358615 17 0.0614809272194614 1.20770239880894 50 0.565173356464318 6 4 2 -6.77856180069686 LTS-023 chr14 107179264 107198951 19688 * character(0) NA 0 NA 0.753 1 NA NA NA NA NA LTS-023 chr14 107198952 107282973 84022 * character(0) 0.336362745212435 2 0.124450793488832 0.685468666235769 40 0.394141513535821 3 2 1 -6.73605941473792 LTS-023 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.640686780464679 5 0.0971030380575191 3 NA NA -5.76468441342037 LTS-023 chr15 20169987 20446043 276057 * character(0) 0.219 1 NA 0.851374361099897 24 0.236669447830158 3 3 0 -5.81460758229565 LTS-023 chr15 20446044 20876515 430472 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.28061118274431 13 0.119899584054367 1.17185148833714 94 0.414425414056692 4 3 1 -6.79238571124655 LTS-023 chr15 20876516 21933061 1056546 * c(POTEB, LINC01193, NF1P2, NBEAP1, LOC646214) 0.023 1 NA 0.872198669172357 11 0.426031539592168 4 4 0 -5.80904276538616 LTS-023 chr15 21933062 22368824 435763 * c(POTEB, OR4M2, NF1P2, LOC646214, CXADRP2, LOC727924) 0.156977397337946 5 0.111115705460569 1.15314450426357 76 0.611127700067239 6 5 1 -6.79485584078513 LTS-023 chr15 22368825 22368862 38 * c(OR4M2, LOC727924) 0.209 1 NA 3.269 1 NA NA NA NA NA LTS-023 chr15 22368863 22383551 14689 * c(OR4N4, OR4M2, LOC727924) 0.0792231358474298 3 0.0952837866585916 2.29799555225983 42 1.48500186651533 14 13 1 -6.73356716247302 LTS-023 chr15 22383552 22413780 30229 * c(OR4N4, OR4N3P, LOC727924) NA 0 NA 1.163 1 NA NA NA NA NA LTS-023 chr15 22413781 22567047 153267 * c(OR4N3P, REREP3) 0.267520034700395 4 0.110729023596646 1.0260110066661 58 0.377460037828231 4 3 1 -6.73486317790938 LTS-023 chr15 22567048 22690470 123423 * REREP3 NA 0 NA 0.685 1 NA NA NA NA NA LTS-023 chr15 22690471 22926231 235761 * c(GOLGA8DP, TUBGCP5, CYFIP1, GOLGA6L1) 0.137008936214631 3 0.247 0.788835097416199 144 0.243154303073075 3 3 0 -6.83306962503308 LTS-023 chr15 22926232 22947098 20867 * CYFIP1 0.04 1 NA 0.75830352792561 51 0.190995990102657 3 3 0 -5.76448805473756 LTS-023 chr15 22947099 26260647 3313549 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-023 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, NIPA1, PWAR1, CYFIP1, NPAP1, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 NDN, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, SNURF) 0.0558953930304997 59 0.0698782568280234 0.789805628544525 1555 0.355538246859125 3 3 0 -6.81625022738241 LTS-023 NA NA NA NA LTS-023 chr15 26788662 32451911 5663250 * c(LOC100288637, LOC100289656, CHRNA7, OTUD7A, FAN1, FAM189A1, GABRA5, GABRB3, GABRG3, DKFZP434L187, LOC283710, APBA2, HERC2P10, MIR211, TRPM1, HERC2P9, WHAMMP2, OCA2, KLF13, MTMR10, NSMCE3, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, HERC2, CHRFAM7A, ARHGAP11B) 0.0660895048261657 71 0.0807740744709578 0.429820244817417 2358 0.218608934731774 2 2 0 -8.51754032620473 LTS-023 chr15 32451912 32455409 3498 * CHRNA7 NA 0 NA 0.027 1 NA NA NA NA NA LTS-023 chr15 32455410 32908459 453050 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) NA 0 NA 0.286879813793265 74 0.28586836214226 1 NA NA -5.7644101450299 LTS-023 chr15 32908460 32908464 5 * ARHGAP11A NA 0 NA 0.45 1 NA NA NA NA NA LTS-023 chr15 32908465 35270589 2362125 * c(MIR1233-2, TMCO5B, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, GOLGA8B, EMC4, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, KATNBL1, AQR, ARHGAP11A, SLC12A6) 0.068803386982791 82 0.0568587225765073 0.425136924772603 2449 0.161137033355556 2 2 0 -8.34689991658074 LTS-023 chr15 35270590 35376273 105684 * ZNF770 0.0409216210132159 5 0.0146526448124562 0.778622605446747 114 0.271153527443046 3 3 0 -6.74435886531446 LTS-023 chr15 35376274 35377268 995 * character(0) NA 0 NA 0.121 1 NA NA NA NA NA LTS-023 chr15 35377269 45060093 9682825 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR1282, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, SERF2-C15ORF63, MIR4510, RASGRP1, SERF2, GPR176, CHP1, CHST14, CASC4, OIP5, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, SPRED1, ADAL, EXD1, FSIP1, RHOV, UBR1, PATL2, EPB42, BAHD1, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, HYPK, GANC, TMEM87A, RPAP1, NA NA NA NA NA NA NA NA NA LTS-023 GCHFR, RPUSD2, TUBGCP4, FAM98B, PLA2G4D, PDIA3, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MAP1A, MEIS2, MFAP1, EIF2AK4, CATSPER2P1, NDUFAF1, NUSAP1, SPTBN5, CTDSPL2, PLCB2, DLL4, INO80, CKMT1A, PPP1R14D, HAUS2, RMDN3, DNAJC17, B2M, PAK6, KNL1, STARD9, VPS18, RAD51, SERINC4, C15orf62, ZNF106, C15orf56, PHGR1, EIF3J-AS1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, TP53BP1, ANP32AP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 PIN4P1, OIP5-AS1, TYRO3, CHAC1, WDR76, TMEM62, SPG11, ELL3, CAPN3, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, LCMT2) 0.064481564204881 275 0.0487767847572403 0.41961556018375 11951 0.169565545187769 2 2 0 -10.8568559242528 LTS-023 NA NA NA NA LTS-023 chr15 45060094 45117968 57875 * character(0) NA 0 NA 1.611 1 NA NA NA NA NA LTS-023 chr15 45117969 45139695 21727 * character(0) 0.02 2 0 1.62831369219752 43 2.42309658559516 0 0 0 -Inf LTS-023 chr15 45139696 45142487 2792 * character(0) NA 0 NA 0.436 1 NA NA NA NA NA LTS-023 chr15 45142488 45361255 218768 * c(TERB2, SORD) 0.0548580320086397 2 0.0827314933988261 0.417822568110074 103 0.286184221312881 2 2 0 -6.80489187586168 LTS-023 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.021 1 NA NA NA NA NA LTS-023 chr15 45365581 45367016 1436 * SORD 0.0864386353733815 2 0.0558614357137373 0.092084767072639 45 0.157981484658644 1 1 0 -6.81353824800694 LTS-023 chr15 45367017 45384803 17787 * SORD NA 0 NA 0.478 1 NA NA NA NA NA LTS-023 chr15 45384804 48789465 3404662 * c(MIR147B, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.0485793107747262 33 0.0472109225934128 0.446958527820927 2376 0.177112093478645 2 2 0 -7.88151295253713 LTS-023 chr15 48789466 58007095 9217630 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, MYZAP, GNB5, ARPP19, SLC27A2, LEO1, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, PRTG, LINC00926, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, USP50, TEX9, TNFAIP8L3, SHC4, UNC13C, MYO5A, NEDD4, RSL24D1, ZNF280D, TRPM7, NA NA NA NA NA NA NA NA NA LTS-023 FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, RFX7, MIR628, TCF12, ATP8B4, POLR2M, SPPL2A, CGNL1, USP8, CCPG1, COPS2, PIGB, SECISBP2L) 0.0702484477802393 174 0.0449138701351403 0.41984264687317 7143 0.167632516307485 2 2 0 -10.8283012169034 LTS-023 NA NA NA NA LTS-023 chr15 58007096 58007216 121 * c(GCOM1, POLR2M) NA 0 NA 0.569 1 NA NA NA NA NA LTS-023 chr15 58007217 58008955 1739 * c(GCOM1, POLR2M) 0.376069948391962 2 0.130107647738325 0.715260093615761 41 0.253122184416741 5 3 2 -6.7383021610674 LTS-023 chr15 58008956 58008971 16 * c(GCOM1, POLR2M) NA 0 NA 0.482 1 NA NA NA NA NA LTS-023 chr15 58008972 59815741 1806770 * c(MIR2116, ADAM10, FAM81A, GCOM1, AQP9, LIPC, MYO1E, FAM63B, RNF111, HSP90AB4P, SLTM, POLR2M, ALDH1A2, CCNB2, LDHAL6B) 0.0743504020413737 47 0.0640005926198279 0.405804370792795 1408 0.130642409151318 2 2 0 -9.20165440173525 LTS-023 chr15 59815742 59910291 94550 * c(FAM81A, GCNT3) NA 0 NA 0.713 1 NA NA NA NA NA LTS-023 chr15 59910292 59930723 20432 * c(GTF2A2, GCNT3) 0.0342625595367522 2 0.0572756492761103 0.726085093546739 60 0.386968841721497 3 3 0 -6.73727284657213 LTS-023 chr15 59930724 59930865 142 * GTF2A2 0.496 1 NA 0.761274685926207 5 0.356492215903798 3 3 0 -5.76441037442205 LTS-023 chr15 59930866 65675251 5744386 * c(USP3-AS1, MIR1272, PDCD7, CLPX, LACTB, MTFMT, SLC51B, C2CD4A, MGC15885, ZNF609, DAPK2, FOXB1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, C2CD4B, KBTBD13, UBAP1L, MIR190A, OAZ2, RPS27L, RASL12, SPG21, RAB8B, CSNK1G1, PPIB, VPS13C, PARP16, IGDCC4, RORA, BNIP2, SNX1, TPM1, CA12, ICE2, SNX22, PIF1, PLEKHO2, APH1B, TLN2, FAM96A, CILP, HERC1, TRIP4, IGDCC3, KIAA0101, USP3) 0.403689313362713 117 0.152386866231002 0.755892671255497 5229 0.221121109538647 3 2 1 -6.84467679778276 LTS-023 chr15 65675252 65675911 660 * IGDCC4 0 1 NA 0.741937189995089 15 0.381358074455466 3 3 0 -5.76441025856588 LTS-023 chr15 65675912 66273062 597151 * c(MIR4511, DENND4A, HACD3, DPP8, IGDCC4, VWA9, MEGF11, RAB11A, SLC24A1) 0.0651443976852356 15 0.167935701981443 0.765999011191416 1103 0.25916398721021 3 3 0 -6.75086493700898 LTS-023 chr15 66273063 66618342 345280 * c(MIR4311, DIS3L, MEGF11) 0.497 1 NA 0.760798980904921 93 0.216954832285402 3 3 0 -5.76589235123683 LTS-023 chr15 66618343 67664810 1046468 * c(SNAPC5, DIS3L, LCTL, SMAD3, SMAD6, TIPIN, ZWILCH, MAP2K1, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SCARNA14, AAGAB) 0.361615468424207 31 0.185676507914701 0.757239288912018 979 0.278721694645509 3 2 1 -6.74235185404457 LTS-023 chr15 67664811 68584556 919746 * c(IQCH-AS1, FEM1B, C15orf61, SKOR1, CLN6, MAP2K5, IQCH, PIAS1, CALML4) 0.362927300335002 19 0.171201635506207 0.791405733563223 757 0.279979280870121 3 2 1 -6.76681200082099 LTS-023 chr15 68584557 68599974 15418 * ITGA11 0 1 NA 0.865365982807571 92 0.237163826000331 4 4 0 -5.76683016276219 LTS-023 chr15 68599975 69354793 754819 * c(MIR548H4, MIR4312, CORO2B, ITGA11, SPESP1, NOX5, ANP32A-IT1, ANP32A) 0.31309413978149 15 0.220733733154634 0.792866015780801 561 0.229583689892443 3 2 1 -6.77261231171055 LTS-023 chr15 69354794 69560860 206067 * c(MIR548H4, GLCE, EWSAT1) 0.494 1 NA 0.834093396237662 36 0.103175620813052 3 3 0 -5.9025598883083 LTS-023 chr15 69560861 71507764 1946904 * c(DRAIC, CT62, GLCE, LINC00593, LRRC49, PAQR5, UACA, LARP6, THAP10, RPLP1, MIR629, TLE3, THSD4, KIF23) 0.463975977243006 25 0.0252354248362627 0.802093303181266 1190 0.230442328449761 4 2 2 -10.1383321247568 LTS-023 chr15 71507765 71704197 196433 * THSD4 NA 0 NA 0.907675147155373 20 0.0925187178785716 4 NA NA -5.83807788291698 LTS-023 chr15 71704198 71953045 248848 * THSD4 0.262 1 NA 1.12490517838292 13 0.311451873057089 5 5 0 -5.77204298642614 LTS-023 chr15 71953046 72699549 746504 * c(NR2E3, SENP8, GRAMD2, HEXA, TMEM202, MYO9A, PKM, PARP6, CELF6, THSD4, HEXA-AS1) 0.302077480775541 21 0.104510354921004 1.11651724836095 1106 0.310892816685645 4 3 1 -6.88868460143106 LTS-023 chr15 72699550 73020370 320821 * c(HIGD2B, ARIH1, TMEM202, GOLGA6B, BBS4, MIR630) 0 1 NA 1.19448736245051 244 0.298241326933873 5 5 0 -5.76464626438592 LTS-023 chr15 73020371 73660799 640429 * c(HCN4, ADPGK-AS1, NEO1, BBS4, ADPGK) 0.141085098848706 13 0.17763445611705 1.20358125891331 468 0.504573837255753 6 5 1 -6.81036712532772 LTS-023 chr15 73660800 73661179 380 * HCN4 0.42 1 NA 1.00017072488378 7 0.346770543045123 4 4 0 -5.76441117391115 LTS-023 chr15 73661180 75336729 1675550 * c(HCN4, LOXL1-AS1, MIR4513, SCAMP2, ARID3B, CLK3, CSK, CYP1A1, CYP1A2, CYP11A1, TBC1D21, SCAMP5, ULK3, NPTN, REC114, LOC283731, GOLGA6A, ISLR, C15orf59, LOXL1, MPI, UBL7-AS1, PML, RPP25, FAM219B, ISLR2, CPLX3, PPCDC, STRA6, LOC729739, LMAN1L, CCDC33, EDC3, CD276, SEMA7A, UBL7, COX5A, STOML1) 0.312848265843285 52 0.118431292171069 1.10327396874532 2247 1.21258826183621 6 4 2 -6.80185392098514 LTS-023 chr15 75336730 75343057 6328 * PPCDC 0 1 NA 1.18644376269187 41 0.645273548535057 5 5 0 -5.76441283269677 LTS-023 chr15 75343058 75647136 304079 * c(COMMD4, C15orf39, PPCDC, GOLGA6C, GOLGA6D, MIR631, NEIL1) 0 1 NA 1.13877859011307 215 0.330086954157437 5 5 0 -5.77007794710654 LTS-023 chr15 75647137 75969226 322090 * c(SNUPN, CSPG4, SNX33, SIN3A, MAN2C1, IMP3, PTPN9, NEIL1) 0.0589664005105625 8 0.168291413922398 0.76654493299153 744 0.210552154443345 3 3 0 -6.74434462742199 LTS-023 chr15 75969227 75981355 12129 * CSPG4 0.438 1 NA 0.846089670751167 79 0.207703930517343 3 3 0 -5.76702810545664 LTS-023 chr15 75981356 76235583 254228 * c(DNM1P35, MIR4313, NRG4, CSPG4, ODF3L1, FBXO22, FBXO22-AS1, UBE2Q2) 0.464191227030642 3 0.0294618397253125 0.755235450863959 315 0.267801412321162 4 2 2 -9.02297322277499 LTS-023 chr15 76235584 79290600 3055017 * c(MIR5003, TSPAN3, HMG20A, CIB2, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, TMEM266, HYKK, CRABP1, NRG4, CTSH, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, IDH3A, IREB2, SCAPER, DNAJA4, PSMA4, RASGRF1, RCN2, LOC645752, SH2D7, LOC646938, ISL2, TYRO3P, PEAK1, WDR61, LINC00597, LINGO1, PSTPIP1, LOC91450) 0.306483554554199 88 0.144223875011393 0.95153134559514 2888 0.31515540207997 4 3 1 -6.79488015242271 LTS-023 chr15 79290601 79307673 17073 * RASGRF1 0 1 NA 1.0600177073835 39 0.871498073456153 4 4 0 -5.76449984158554 LTS-023 chr15 79307674 81441258 2133585 * c(ST20-MTHFS, MIR4514, MTHFS, CFAP161, FAH, MESDC2, KIAA1024, TMED3, ST20-AS1, LINC00927, ANKRD34C, ST20, MIR184, ZFAND6, CEMIP, ABHD17C, RASGRF1, MESDC1, BCL2A1, MIR549A, ANKRD34C-AS1, ARNT2) 0.219957833702576 39 0.166828178152376 0.97117247306522 1345 0.446435505224256 4 3 1 -6.77686675603799 LTS-023 chr15 81441259 81489503 48245 * c(CFAP161, IL16) 0.375 1 NA 0.85857475792379 23 0.249959174532175 4 4 0 -5.77213490786786 LTS-023 chr15 81489504 86289271 4799768 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4515, AKAP13, C15orf40, WHAMM, FSD2, SEC11A, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, NMB, HDGFRP3, PDE8A, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, EFL1, STARD5, AP3B2, FAM103A1, MEX3B, WDR73, SLC28A1, HOMER2, NA NA NA NA NA NA NA NA NA LTS-023 ZNF592) 0.27558575712125 75 0.152236967962497 0.962182540812892 3313 0.381755228779304 4 3 1 -6.7404860246753 LTS-023 NA NA NA NA LTS-023 chr15 86289272 89007972 2718701 * c(MIR1276, AKAP13, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.245234784735675 31 0.167958680274554 1.12370572982115 784 0.4862283723967 5 4 1 -6.787145994781 LTS-023 chr15 89007973 91073451 2065479 * c(MIR1179, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, ACAN, GABARAPL3, MIR9-3HG, MRPL46, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, GDPGP1, MIR7-2, MIR9-3, MFGE8, TTLL13P, NGRN, RHCG, PLIN1, POLG, DET1, FANCI, MESP1, WDR93, RLBP1, AEN, CRTC3, MRPS11, PEX11A, IQGAP1, TICRR) 0.274123437898365 108 0.130668148793171 0.983160565331183 3021 0.359335336945573 4 3 1 -6.73627108821264 LTS-023 chr15 91073452 91083221 9770 * CRTC3 NA 0 NA 1.186 1 NA NA NA NA NA LTS-023 chr15 91083222 102358835 11275614 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, VPS33B, SLCO3A1, FAM169B, IGF1R, HDDC3, SPATA41, OR4F6, OR4F15, FAM174B, LINC01197, MAN2A2, MEF2A, LOC440311, PRKXP1, FURIN, PCSK6, LINS1, MCTP2, SELENOS, UNC45A, RGMA, BLM, NR2F2-AS1, CRTC3, NA NA NA NA NA NA NA NA NA LTS-023 TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.29147469889163 230 0.139197369958285 1.05387563861378 5748 0.543784495132335 4 3 1 -6.88297692184955 LTS-023 NA NA NA NA LTS-023 chr15 102358836 102516544 157709 * c(FAM138E, OR4F4, WASH3P, OR4F15, OR4F13P) NA 0 NA 1.07949551150708 31 0.249766157301852 4 NA NA -5.77946966253187 LTS-023 chr16 81704 103735 22032 * POLR3K 0.354 1 NA 0.74140609509842 41 0.364261153301966 3 3 0 -5.76441568952492 LTS-023 chr16 103736 136888 33153 * c(MPG, RHBDF1, SNRNP25, NPRL3) 0.378435781573631 10 0.140256154549057 0.701199206806162 213 0.214536774247798 3 2 1 -6.77853173271435 LTS-023 chr16 136889 142543 5655 * NPRL3 0 1 NA 1.0669200657869 13 0.819029867023739 4 4 0 -5.76444933996396 LTS-023 chr16 142544 332410 189867 * c(HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, LUC7L, PDIA2, NPRL3, FAM234A, RGS11) 0.278444873369435 15 0.242933206575682 0.780616681630187 445 0.371110406072496 3 2 1 -6.77342404070432 LTS-023 chr16 332411 333030 620 * c(ARHGDIG, LUC7L, PDIA2) 0.471 1 NA 0.779713389326778 13 0.196729574901756 3 3 0 -5.76442780448487 LTS-023 chr16 333031 1306681 973651 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSD1, TPSG1, DECR2, NHLRC4, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, NARFL, LINC00235, TPSB2, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, TPSAB1, MIR662, METRN, AXIN1, WDR24, HAGHL, METTL26, MCRIP2, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.368398952230577 79 0.174717308650936 0.805194917805074 2987 0.360758141617331 3 2 1 -6.77357404041553 LTS-023 chr16 1306682 1308429 1748 * TPSD1 0 1 NA 0.996747133898598 17 1.66288840885193 4 4 0 -5.76441028648975 LTS-023 chr16 1308430 1389629 81200 * c(TPSD1, UBE2I, BAIAP3) 0.215956096022012 9 0.245194820499944 0.72365406509472 171 0.317250775829409 4 3 1 -6.80033382744334 LTS-023 chr16 1389630 1391132 1503 * BAIAP3 0.479 1 NA 0.782725054266644 9 0.395579989101797 3 3 0 -5.76442272993939 LTS-023 chr16 1391133 1727523 336391 * c(TSR3, CLCN7, C16orf91, PTX4, CRAMP1, CCDC154, UNKL, TMEM204, GNPTG, BAIAP3, IFT140, TELO2) 0.400766351333068 72 0.158782683350803 0.780905572614935 1296 0.259812766791922 3 2 1 -6.82438594764026 LTS-023 chr16 1727524 2140927 413404 * c(MIR1225, MIR3177, NUBP2, TBL3, NOXO1, RNF151, EME2, MAPK8IP3, MEIOB, GFER, SNORA64, NPW, HAGH, IGFALS, NDUFB10, NME3, NTHL1, MSRB1, PKD1, SNORA10, CRAMP1, RPL3L, RPS2, HS3ST6, LINC00254, MRPS34, SNORA78, TSC2, SNHG9, FAHD1, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2) 0.366931842945156 41 0.0932551443686594 0.982766240609486 1612 0.256944651656522 4 2 2 -6.79374391202101 LTS-023 chr16 2140928 2159257 18330 * PKD1 0 1 NA 1.02810662803866 65 0.24521972780314 4 4 0 -5.76488561330605 LTS-023 chr16 2159258 2226211 66954 * c(MIR3180-5, MIR4516, RAB26, SNORD60, PKD1, TRAF7) 0.130910114215295 4 0.211901706773054 1.06236211368767 172 0.311852632170207 6 5 1 -6.80394149126049 LTS-023 chr16 2226212 2259933 33722 * c(BRICD5, CASKIN1, MLST8, TRAF7) 0.225774542353166 5 0.261015708339556 0.811735740718772 221 0.397064713041928 4 3 1 -6.75102003255622 LTS-023 chr16 2259934 2260567 634 * BRICD5 0.485 1 NA 0.964496390732031 11 0.0689307953345567 4 4 0 -5.76442338920452 LTS-023 chr16 2260568 2487172 226605 * c(MIR940, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, BRICD5, PGP, ABCA17P, CCNF) 0.329383478178577 11 0.213309804573706 0.77959326291442 459 0.234545797737888 3 2 1 -6.73914824420792 LTS-023 chr16 2487173 2550982 63810 * c(NTN3, TBC1D24, C16orf59, CCNF) 0 1 NA 1.15799175828386 254 0.237212424664818 5 5 0 -5.76558033919589 LTS-023 chr16 2550983 2563847 12865 * c(ATP6V0C, TBC1D24) NA 0 NA 0.755 1 NA NA NA NA NA LTS-023 chr16 2563848 2653223 89376 * c(MIR3178, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CEMP1) 0.417599415763462 7 0.180156810003053 0.812665428911161 296 0.311713024462869 4 2 2 -6.75974189927389 LTS-023 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.322 1 NA NA NA NA NA LTS-023 chr16 2672647 2732840 60194 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.338988826431977 4 0.0950662050012166 0.474900130980682 99 0.682894105184013 3 2 1 -6.74900850828897 LTS-023 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.677 1 NA NA NA NA NA LTS-023 chr16 2747831 3652141 904311 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, ZNF263, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, ZNF597, BICDL2, NLRC3, CLUAP1, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, OR2C1, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, PRSS22, MMP25, C16orf90, TCEB2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, SLX4, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.378423915354599 81 0.172588672861228 0.772608019118227 2459 0.3390302461448 3 2 1 -6.7673671922427 LTS-023 chr16 3652142 3659069 6928 * SLX4 0.475 1 NA 0.809719858277144 27 0.0960098968070495 3 3 0 -5.76734308381665 LTS-023 chr16 3659070 4562512 903443 * c(LINC01569, CORO7-PAM16, TRAP1, VASN, ADCY9, CREBBP, DNASE1, CDIP1, HMOX2, PAM16, NMRAL1, SRL, TFAP4, CORO7, SLX4, GLIS2, DNAJA3) 0.444501145293416 43 0.08343334419516 0.792008444741192 1151 0.366655129592112 4 2 2 -7.09626970711347 LTS-023 chr16 4562513 4563699 1187 * CDIP1 0 1 NA 0.770819751738 13 0.20764571652154 3 3 0 -5.76442644721699 LTS-023 chr16 4563700 4846127 282428 * c(ANKS3, UBALD1, SEPT12, C16orf71, MGRN1, ZNF500, CDIP1, C16orf96, SMIM22, NUDT16L1) 0.357829589410147 10 0.235802742421146 0.775391163247575 552 0.224148932154498 3 2 1 -6.74100311090996 LTS-023 chr16 4846128 4897389 51262 * c(UBN1, SMIM22, ROGDI, GLYR1) 0.291574491671657 5 0.174346494085772 0.541743845718879 204 0.181742279233659 3 2 1 -6.87431984910768 LTS-023 chr16 4897390 4902235 4846 * UBN1 NA 0 NA 1.14 1 NA NA NA NA NA LTS-023 chr16 4902236 8873388 3971153 * c(NAGPA-AS1, C16orf89, ABAT, EEF2KMT, TMEM114, UBN1, NAGPA, RBFOX1, PPL, ALG1, METTL22, SEC14L5) 0.305177677216361 38 0.208788963876685 0.809656892076953 985 0.325187754431889 3 2 1 -6.89296830857695 LTS-023 chr16 8873389 8873456 68 * ABAT 0.435 1 NA 0.766585566529414 3 0.518461506124932 3 3 0 -5.76441023520997 LTS-023 chr16 8873457 8947282 73826 * c(ABAT, CARHSP1, TMEM186, PMM2) 0.415173719730483 20 0.105667539705287 0.786148568236591 209 0.39605189230529 4 2 2 -6.76459247410734 LTS-023 chr16 8947283 8948473 1191 * CARHSP1 0.433 1 NA 0.703718592228985 19 0.152991858515183 3 3 0 -5.7645186241167 LTS-023 chr16 8948474 9916095 967622 * c(MIR548X, CARHSP1, GRIN2A, C16orf72, USP7) 0.17860036158529 9 0.234259352949769 0.815690526733873 585 0.284365853191867 3 3 0 -6.99386783565082 LTS-023 chr16 9916096 9916204 109 * GRIN2A 0.456 1 NA 0.945350637665706 3 0.205585343187041 4 4 0 -5.76441179692721 LTS-023 chr16 9916205 10861919 945715 * c(TEKT5, EMP2, GRIN2A, NUBP1, TVP23A, ATF7IP2) 0.441803999623412 14 0.0847237268426613 0.787894743957684 377 0.225512336313975 4 2 2 -7.37474127557646 LTS-023 chr16 10861920 12061626 1199707 * c(RMI2, CLEC16A, RSL1D1, DEXI, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, TXNDC11, PRM1, PRM2, PRM3, TNFRSF17, TNP2, TVP23A, SNN, SOCS1, LITAF) 0.390095591804498 51 0.153934050049708 0.722374927198033 1176 0.241292950355282 3 2 1 -6.80870865902325 LTS-023 chr16 12061627 12146129 84503 * c(TNFRSF17, SNX29) 0 1 NA 0.681151424287675 45 0.202303664641234 3 3 0 -5.774929839412 LTS-023 chr16 12146130 12758166 612037 * c(CPPED1, SNX29) 0.229637976201826 9 0.168275650182801 0.785172317613328 173 0.349112719840921 4 3 1 -6.90015889320298 LTS-023 chr16 12758167 12758966 800 * CPPED1 0.485 1 NA 0.836887284910758 17 0.276103041826566 3 3 0 -5.76449139331682 LTS-023 chr16 12758967 12897744 138778 * c(MIR4718, CPPED1) 0.47109673317663 2 0.0304055915910215 0.738798197795582 29 0.180183342586968 4 2 2 -9.28805252156326 LTS-023 chr16 12897745 12995447 97703 * character(0) NA 0 NA 1.355 1 NA NA NA NA NA LTS-023 chr16 12995448 13005405 9958 * SHISA9 0.311049299967666 8 0.130214589373519 1.20116896154425 86 0.411240157866253 7 5 2 -6.74886486427216 LTS-023 chr16 13005406 15069025 2063620 * c(MIR365A, ERCC4, PDXDC1, NOMO1, PARN, BFAR, MIR193B, MKL2, NPIPA3, SHISA9, ABCC6P2, PLA2G10, NPIPA1) 0.310151426365432 11 0.214005777322185 0.760849006758236 470 0.259455857796463 3 2 1 -6.75123665700624 LTS-023 chr16 15069026 15069048 23 * PDXDC1 NA 0 NA 0.526 1 NA NA NA NA NA LTS-023 chr16 15069049 15082526 13478 * PDXDC1 0 1 NA 0.593582308859581 16 0.57291452242023 2 2 0 -5.76488109412769 LTS-023 chr16 15082527 15082865 339 * PDXDC1 0.446 1 NA 0.653072830000997 7 0.38197980500096 3 3 0 -5.76443521377129 LTS-023 chr16 15082866 15123936 41071 * PDXDC1 0.455664391281695 4 0.0385313724991294 0.561425767733378 85 0.135427508594206 2 1 1 -7.89412690736965 LTS-023 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.779 1 NA NA NA NA NA LTS-023 chr16 15125636 15839034 713399 * c(NPIPA5, MIR3180-4, NTAN1, PDXDC1, MPV17L, MYH11, RRN3, NDE1, MIR484, C16orf45, KIAA0430) 0.446612455032964 19 0.04972991380935 0.750339646570263 777 0.215134658359736 4 2 2 -7.86707178137758 LTS-023 chr16 15839035 15961051 122017 * c(FOPNL, MYH11) 0 1 NA 0.753179848150083 129 0.201017189838245 3 3 0 -5.76453459394566 LTS-023 chr16 15961052 17202221 1241170 * c(MIR3179-2, FOPNL, PKD1P1, ABCC6, NOMO3, ABCC1, XYLT1) 0.25758397882273 32 0.21656150647959 0.80792171399065 479 0.539826454454959 4 3 1 -6.82463188664235 LTS-023 chr16 17202222 17202757 536 * XYLT1 0.41 1 NA 0.894813959968801 11 0.140427982189513 4 4 0 -5.76453580823537 LTS-023 chr16 17202758 19315559 2112802 * c(COQ7, ITPRIPL2, SMG1, ARL6IP1, NOMO2, SYT17, RPS15A, XYLT1, ABCC6P1, CLEC19A, TMC7) 0.463517024702185 11 0.0305649829350219 0.771302791062193 865 0.223191641310339 4 2 2 -9.90879443356664 LTS-023 chr16 19315560 19333114 17555 * CLEC19A NA 0 NA 1.282 1 NA NA NA NA NA LTS-023 chr16 19333115 19471665 138551 * TMC5 0.370555959597084 2 0.0127279220613579 1.23400463821969 54 0.259122146607221 8 5 3 -7.0506663841052 LTS-023 chr16 19471666 19477491 5826 * TMC5 0 1 NA 1.2026039986864 21 1.15638542347223 5 5 0 -5.76441016992678 LTS-023 chr16 19477492 19589770 112279 * c(GDE1, C16orf62, TMC5, CCP110) 0.24886204858012 13 0.180194517404288 1.17968075745771 324 0.537528096471997 4 3 1 -6.74617074697808 LTS-023 chr16 19589771 19590334 564 * C16orf62 0.406 1 NA 1.01098702231822 2 0.429213816180234 4 4 0 -5.76441227923627 LTS-023 chr16 19590335 19712051 121717 * C16orf62 0.369958196351204 4 0.0266395695660922 1.13787971346046 151 0.384830290510611 5 3 2 -6.83390194058993 LTS-023 chr16 19712052 19716401 4350 * C16orf62 NA 0 NA 0.828 1 NA NA NA NA NA LTS-023 chr16 19716402 20855309 1138908 * c(ERI2, ACSM1, ACSM2A, IQCK, GPR139, PDILT, GP2, ACSM2B, KNOP1, GPRC5B, ACSM5, THUMPD1, ACSM3, UMOD, LOC81691) 0.360175107694014 34 0.189174725185056 0.785872552234489 1135 0.326622275022437 3 2 1 -6.75604151538025 LTS-023 chr16 20855310 20860983 5674 * c(ERI2, LOC81691) 0 1 NA 0.804541592232836 29 0.168762315733764 3 3 0 -5.76506906529954 LTS-023 chr16 20860984 21156461 295478 * c(ERI2, DCUN1D3, DNAH3, LYRM1, LOC81691) 0.213485199217588 12 0.249013493001824 0.778924419354766 476 0.333907541931962 4 3 1 -6.83922945192057 LTS-023 chr16 21156462 21190791 34330 * c(DNAH3, TMEM159) 0.467 1 NA 0.677686811757671 53 0.227016301851301 3 3 0 -5.76819388003656 LTS-023 chr16 21190792 21610804 420013 * c(LOC100190986, SMG1P3, SNX29P1, CRYM, NPIPB3, ANKS4B, SLC7A5P2, CRYM-AS1, TMEM159, ZP2) 0.448535556994834 11 0.0439439725932093 0.722869843438244 261 0.228630843177615 4 2 2 -7.87762663013213 LTS-023 chr16 21610805 21636241 25437 * METTL9 0 1 NA 0.845377014501346 17 0.179307532403049 3 3 0 -5.77167264722255 LTS-023 chr16 21636242 22588118 951877 * c(RRN3P3, NPIPB5, IGSF6, CDR2, VWA3A, OTOA, PDZD9, EEF2K, METTL9, POLR3E, SMG1P1, LOC653786, RRN3P1, C16orf52, UQCRC2) 0.276403333715759 21 0.226123522922865 0.749047802974497 1001 0.261848723941459 3 2 1 -6.78079151031675 LTS-023 chr16 22588119 22825638 237520 * c(MIR548AA2, LOC653786, MIR548D2) 0.458 1 NA 0.553452000569354 11 0.130580104289909 2 2 0 -5.80311216851721 LTS-023 chr16 22825639 23200921 375283 * c(USP31, SCNN1G, HS3ST2) 0.456104563002392 19 0.0332295753563384 0.742381138823326 329 0.216188789284965 4 2 2 -8.55797791666354 LTS-023 chr16 23200922 23203753 2832 * SCNN1G 0 1 NA 0.655967017592746 5 0.490584039691468 3 3 0 -5.76452923381528 LTS-023 chr16 23203754 24870004 1666251 * c(CACNG3, ERN2, SLC5A11, EARS2, GGA2, TNRC6A, NDUFAB1, PLK1, PRKCB, UBFD1, RBBP6, SCNN1B, SCNN1G, CHP2, PALB2, DCTN5, COG7) 0.301299819368936 56 0.211835649814821 0.753841637886278 1888 0.360256923895433 3 2 1 -6.75406234164056 LTS-023 chr16 24870005 24881346 11342 * SLC5A11 0.419 1 NA 0.809178706313617 13 0.478655341448767 3 3 0 -5.76460022818686 LTS-023 chr16 24881347 27374408 2493062 * c(LCMT1-AS2, SLC5A11, C16orf82, NSMCE1, ZKSCAN2, AQP8, IL4R, FLJ21408, LCMT1, ARHGAP17, LOC554206, KDM8, HS3ST4) 0.442156273952869 28 0.0906176556958385 0.714473720987959 680 0.240514374501869 3 2 1 -7.45826268575006 LTS-023 chr16 27374409 27375217 809 * IL4R 0 1 NA 0.802607335962127 19 0.923838698864941 3 3 0 -5.76441306704562 LTS-023 chr16 27375218 27712930 337713 * c(KIAA0556, IL21R-AS1, GTF3C1, IL4R, IL21R) 0.212051226783376 10 0.231925299276393 0.727105924804368 407 0.307925328552357 3 2 1 -6.91296216021212 LTS-023 chr16 27712931 27715175 2245 * KIAA0556 0.471 1 NA 0.989307200448549 7 0.338040149770915 4 4 0 -5.76441198206081 LTS-023 chr16 27715176 28222601 507426 * c(GSG1L, XPO6, KIAA0556) 0.455366810768097 9 0.0305291299872397 0.738908592348726 302 0.233632523050954 4 2 2 -8.79787995137469 LTS-023 chr16 28222602 28331484 108883 * c(XPO6, SBK1) 0 1 NA 0.779247340710559 21 0.381496395789003 3 3 0 -5.7652136826814 LTS-023 chr16 28331485 28603838 272354 * c(SGF29, CLN3, IL27, NUPR1, SBK1, APOBR, SULT1A2) 0.2295730656052 13 0.220095754219933 0.770822251888277 346 0.344666823226805 4 3 1 -6.8249222366004 LTS-023 chr16 28603839 28608392 4554 * SULT1A2 NA 0 NA 0.809137649218467 38 0.187371251197319 3 NA NA -5.7649075054194 LTS-023 chr16 28608393 28617514 9122 * SULT1A1 0.497 1 NA 0.328395167714022 9 0.364937475618922 1 1 0 -5.76516003437582 LTS-023 chr16 28617515 28712734 95220 * SULT1A1 0.463900758367777 3 0.0212837966537928 0.447952989822448 70 0.276888063652012 2 1 1 -10.0370015827038 LTS-023 chr16 28712735 28734495 21761 * character(0) NA 0 NA 0.759 1 NA NA NA NA NA LTS-023 chr16 28734496 28905731 171236 * c(ATP2A1-AS1, MIR4721, ATXN2L, SH2B1, ATP2A1, TUFM) 0.391174808264213 7 0.177628692448468 0.752107921416263 351 0.184743623958735 3 2 1 -6.78177632448969 LTS-023 chr16 28905732 28906085 354 * ATP2A1 0 1 NA 0.758984566703378 7 1.4273896254552 3 3 0 -5.76441016114982 LTS-023 chr16 28906086 29755860 849775 * c(SLX1B-SULT1A4, MIR4517, QPRT, LAT, C16orf54, SNX29P2, SMG1P2, ATP2A1, SLX1A, BOLA2, LOC606724, LOC613038, RRN3P2, SPN, SULT1A3, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19) 0.254032659844072 15 0.231528708494525 0.729096656344004 745 0.386807582367336 3 2 1 -6.81740098551267 LTS-023 chr16 29755861 29790864 35004 * c(SLX1B-SULT1A4, C16orf54, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, ZG16) 0.427 1 NA 0.889168648722178 17 0.119807719725744 4 4 0 -5.77736451060161 LTS-023 chr16 29790865 30681521 890657 * c(SLX1B-SULT1A4, MIR4518, CD2BP2, CDIPT, CORO1A, PRRT2, ZNF689, TMEM219, C16orf92, ZNF785, ZNF688, SEPT1, ZNF48, ALDOA, SEPHS2, KCTD13, ASPHD1, TBC1D10B, SEZ6L2, INO80E, MYLPF, ITGAL, KIF22, MAZ, SMG1P2, CDIPT-AS1, SULT1A4, ZNF771, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, ZG16, ZNF747, TBX6, PRR14, DCTPP1, GDPD3, PAGR1, ZNF768, YPEL3, FAM57B, DOC2A, HIRIP3, ZNF764, NA NA NA NA NA NA NA NA NA LTS-023 TAOK2, MVP) 0.363135371427436 49 0.186092357839484 0.743810144790655 2551 0.284676419938485 3 2 1 -6.74207994801856 LTS-023 NA NA NA NA LTS-023 chr16 30681522 30712105 30584 * c(SRCAP, FBRS, LOC730183) 0 1 NA 0.768928724733891 18 0.343728484769345 3 3 0 -5.76454059086139 LTS-023 chr16 30712106 31094908 382803 * c(MIR762, MIR4519, TMEM265, SRCAP, STX1B, CTF1, ZNF629, FBXL19-AS1, PRSS53, PHKG2, FBXL19, SNORA30, STX4, ZNF668, HSD3B7, CCDC189, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.251867959476067 10 0.246527460719671 0.745052093826612 1447 0.202177923444412 3 2 1 -6.80948614003544 LTS-023 chr16 31094909 31095558 650 * PRSS53 0.497 1 NA 0.744234699775097 11 0.287347872795328 3 3 0 -5.76441019780059 LTS-023 chr16 31095559 31336719 241161 * c(PYCARD-AS1, BCKDK, PRSS36, FUS, PYDC1, PYCARD, PRSS53, ITGAM, TRIM72, PRSS8, VKORC1, KAT8) 0.453634476233154 15 0.0464396177335483 0.747189835848012 593 0.208054035380853 4 2 2 -7.75240035268333 LTS-023 chr16 31336720 31339565 2846 * ITGAM 0 1 NA 0.719975039508267 15 0.714878777602655 3 3 0 -5.76441465783517 LTS-023 chr16 31339566 31487491 147926 * c(COX6A2, ZNF843, ITGAD, ITGAM, ITGAX, TGFB1I1, ARMC5) 0.133485058237642 12 0.204861741995262 0.752263765526184 497 0.389916939412002 3 3 0 -6.8579373048049 LTS-023 chr16 31487492 31489033 1542 * TGFB1I1 0.478 1 NA 0.722362629762008 20 0.0979899430929951 3 3 0 -5.7645181219742 LTS-023 chr16 31489034 31772795 283762 * c(CLUHP3, ZNF720, YBX3P1, AHSP, C16orf58, SLC5A2, TGFB1I1) 0.442435018609099 11 0.0628519183188838 0.714300093029057 339 0.178119455174728 4 2 2 -7.51976272574058 LTS-023 chr16 31772796 31805034 32239 * ZNF720 0 1 NA 0.796059405135866 13 0.781059151048048 3 3 0 -5.76453861882468 LTS-023 chr16 31805035 31927844 122810 * ZNF267 0.472 1 NA 0.727106565486208 76 0.180583348594143 3 3 0 -5.76604992437026 LTS-023 chr16 31927845 31987811 59967 * ZNF267 NA 0 NA 0.862 1 NA NA NA NA NA LTS-023 chr16 31987812 33961439 1973628 * c(SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.261207418733034 29 0.113381673743541 0.968958918905517 229 0.461978799522393 4 3 1 -6.73411439452981 LTS-023 chr16 33961440 33961481 42 * LINC00273 0.453 1 NA 0.905004628127613 6 0.13626004550124 4 4 0 -5.76441789730508 LTS-023 chr16 33961482 33961898 417 * LINC00273 0.35527172178584 16 0.0831674766159625 1.00860216499534 25 0.423565323572803 11 7 4 -6.73445214842646 LTS-023 chr16 33961899 33961902 4 * LINC00273 0.44 1 NA 0.617 1 NA NA NA NA NA LTS-023 chr16 33961903 34285586 323684 * LINC00273 0.304008020722546 34 0.117402122923835 0.636394615119558 105 0.340747200128782 3 2 1 -6.83279545209698 LTS-023 chr16 34285587 34682380 396794 * c(LINC01566, UBE2MP1) NA 0 NA 0.75567433013339 75 0.240621733720665 3 NA NA -5.76496288864964 LTS-023 chr16 46508169 46512406 4238 * ANKRD26P1 0 1 NA 0.614156956907506 13 0.353111771365559 2 2 0 -5.76501566309009 LTS-023 chr16 46512407 51185234 4672828 * c(LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, BRD7, C16orf87, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, SIAH1, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.233923856516394 58 0.129929246882302 0.549443502510245 3058 0.188270415595775 2 1 1 -7.83293542213055 LTS-023 chr16 52060873 52082696 21824 * C16orf97 0 1 NA 0.892064478200928 17 0.744950713924398 4 4 0 -5.76460527731189 LTS-023 chr16 52082697 52092318 9622 * C16orf97 0.481 1 NA 0.882045655258314 11 0.0898844713052159 4 4 0 -5.77186944428036 LTS-023 chr16 52092319 57071209 4978891 * c(MIR3935, LINC00919, IRX5, CES1, CETP, NUDT21, CES5A, RPGRIP1L, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, MT1DP, C16orf97, CES1P2, MIR138-2, MMP2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, CES1P1, LPCAT2, OGFOD1, BBS2, RBL2, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, SLC6A2, SLC12A3, FTO, IRX6, IRX3, CHD9, NLRC5, CAPNS2, MT4, NUP93, HERPUD1) 0.386497001661122 108 0.156160313824311 0.73747854200084 3053 0.248788207455824 3 2 1 -6.7927040798558 LTS-023 chr16 57071210 57074507 3298 * NLRC5 0 1 NA 0.880453142172086 7 1.78969945601409 4 4 0 -5.76441682062238 LTS-023 chr16 57074508 57689322 614815 * c(CPNE2, ADGRG5, ARL2BP, PLLP, POLR2C, DOK4, COQ9, CIAPIN1, CCL17, CCL22, CX3CL1, FAM192A, NLRC5, RSPRY1, ADGRG1, CCDC102A) 0.161485973409967 12 0.220782544188126 0.750963495511421 1137 0.321951426267388 3 3 0 -6.91221669096287 LTS-023 chr16 57689323 57691409 2087 * ADGRG1 0.494 1 NA 0.688419811010843 23 0.108467368182667 3 3 0 -5.76511869339064 LTS-023 chr16 57691410 66437108 8745699 * c(CDH5, CDH8, CDH11, KATNB1, CNGB1, CSNK2A2, PRSS54, ADGRG3, CNOT1, GOT2, LINC00922, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MMP15, SLC38A7, ZNF319, APOOP5, GINS3, NDRG4, SNORA46, SNORA50A, USB1, SETD6, DRC7, ADGRG1) 0.303784842022751 50 0.217320157878666 0.759126430614224 2246 0.26629688239219 3 2 1 -6.76927022893159 LTS-023 chr16 66437109 66527099 89991 * c(CDH5, LINC00920, BEAN1, TK2) 0.496 1 NA 0.752993813991006 69 0.145086799724821 3 3 0 -5.7645759905818 LTS-023 chr16 66527100 66785633 258534 * c(CKLF-CMTM1, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, CKLF, TK2) 0.426803386390668 13 0.129651159180792 0.71137007187212 485 0.202793191736403 3 2 1 -6.99723387083827 LTS-023 chr16 66785634 66857128 71495 * c(TERB1, NAE1) 0 1 NA 0.706393273390677 141 0.15227886087405 3 3 0 -5.77017342979551 LTS-023 chr16 66857129 67034605 177477 * c(CDH16, CES3, CES4A, FAM96B, PDP2, RRAD, CA7, CES2, NAE1) 0.19406063786071 11 0.237197156199418 0.764466617813332 502 0.446578206641747 4 3 1 -6.81832562689226 LTS-023 chr16 67034606 67063612 29007 * c(CES4A, CBFB) 0.487 1 NA 0.701625031936015 77 0.2604530682328 3 3 0 -5.76541587556125 LTS-023 chr16 67063613 67266065 202453 * c(E2F4, LRRC29, EXOC3L1, TMEM208, FHOD1, HSF4, MIR328, FBXL8, KIAA0895L, ELMO3, C16orf70, B3GNT9, CBFB, TRADD, NOL3) 0.425466687826128 25 0.132640089465189 0.732348648505534 807 0.217171325434059 4 2 2 -6.96776631292002 LTS-023 chr16 67266066 67272726 6661 * FHOD1 0 1 NA 0.752747439105773 51 0.412332533801752 3 3 0 -5.76441153326005 LTS-023 chr16 67272727 67685623 412897 * c(CTCF, CARMIL2, KCTD19, AGRP, PLEKHG4, FHOD1, ZDHHC1, HSD11B2, TPPP3, LRRC36, SLC9A5, FAM65A, ATP6V0D1) 0.236724638388265 17 0.23608948017025 0.75077107190368 977 0.299001966308195 3 2 1 -6.84665769847982 LTS-023 chr16 67685624 67692172 6549 * c(CARMIL2, ACD) 0.489 1 NA 0.763846840046799 79 0.190242213947228 3 3 0 -5.76446436709296 LTS-023 chr16 67692173 69499927 1807755 * c(CDH3, NUTF2, NRN1L, ZFP90, TMED6, CTRL, EDC4, PLA2G15, VPS4A, HAS3, C16orf86, LCAT, NFATC3, PARD6A, NIP7, PRMT7, DUS2, CHTF8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, PDF, DPEP2, DPEP3, ACD, SLC12A4, SNTB2, TERF2, TANGO6, ESRP2, CENPT, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, UTP4, SLC7A6, CDH1) 0.395716368979206 88 0.161115702501266 0.760455306638025 3326 0.993131082249334 4 2 2 -6.80131352362625 LTS-023 chr16 69499928 69740906 240979 * c(MIR1538, NFAT5, CYB5B) 0 1 NA 0.725616143131066 154 0.17636935466732 3 3 0 -5.76831523963484 LTS-023 chr16 69740907 70134395 393489 * c(MIR1972-1, WWP2, NQO1, PDXDC2P, CLEC18C, NOB1, CLEC18A, MIR140) 0 2 0 0.696033014662146 367 0.178240729804388 0 0 0 -Inf LTS-023 chr16 70134396 70154389 19994 * c(CLEC18C, PDPR) NA 0 NA 1.037 1 NA NA NA NA NA LTS-023 chr16 70154390 70191079 36690 * c(CLEC18C, PDPR) 0.410825025898507 4 0.0521472274750377 1.08393620793466 108 0.286288015004959 4 2 2 -6.77953530698172 LTS-023 chr16 70191080 70603093 412014 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, AARS, FUK, SF3B3, COG4, CLEC18C, PDPR, DDX19A, ST3GAL2, SNORD111) 0.00260632748573729 5 0.00715541752799933 0.737676342297876 863 0.229666734844556 6 6 0 -10.7906174844617 LTS-023 chr16 70603094 70680850 77757 * c(IL34, SF3B3) 0.446 1 NA 0.789721770603733 85 0.265663257501964 3 3 0 -5.76645770207857 LTS-023 chr16 70680851 70874094 193244 * c(VAC14-AS1, IL34, HYDIN, VAC14, MTSS1L) 0.475860966273191 6 0.0179823988017913 0.755454009681237 319 0.23699509427554 4 2 2 -11.6184532810148 LTS-023 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 1.389 1 NA NA NA NA NA LTS-023 chr16 70883627 71196616 312990 * HYDIN 0.308148127810171 81 0.0628536537531706 1.23347433139268 558 0.484913001578652 7 5 2 -6.84121532138362 LTS-023 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.852 1 NA NA NA NA NA LTS-023 chr16 71209484 71417783 208300 * c(HYDIN, CMTR2, CALB2) 0.455416827236495 8 0.0232808934536456 0.773420270540282 146 0.171702210741034 4 2 2 -9.41736938100178 LTS-023 chr16 71417784 71418718 935 * CALB2 0 1 NA 0.900125988146181 9 0.30190069191338 4 4 0 -5.76445142500936 LTS-023 chr16 71418719 71703384 284666 * c(CHST4, PHLPP2, TAT, ZNF19, ZNF23, CALB2, MARVELD3) 0.108285284201246 3 0.260384971404521 0.75284560464102 514 0.170583789325375 3 3 0 -6.77552223299288 LTS-023 chr16 71703385 71706077 2693 * PHLPP2 NA 0 NA 1.251 1 NA NA NA NA NA LTS-023 chr16 71706078 72132554 426477 * c(SNORA70D, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, TXNL4B, ZNF821, SNORD71, DHX38, IST1) 0.0840500312241185 7 0.175918406411284 1.04780317470331 754 0.371787393861658 4 4 0 -6.79806617299656 LTS-023 chr16 72132555 72817297 684743 * c(ZFHX3, PMFBP1, DHX38) 0 2 0 1.44592788326402 249 0.515008192869427 0 0 0 -Inf LTS-023 chr16 72817298 72817326 29 * ZFHX3 NA 0 NA 0.656 1 NA NA NA NA NA LTS-023 chr16 72817327 74933634 2116308 * c(LINC01568, MLKL, GLG1, HCCAT5, LOC283922, ZFHX3, CLEC18B, RFWD3, PSMD7, FA2H, WDR59) 0.164997513727553 34 0.16683000196118 1.13464964061315 1061 0.517847192006678 5 4 1 -6.80510741747837 LTS-023 chr16 74933635 75034268 100634 * c(WDR59, ZNRF1) 0.319 1 NA 0.98111157649766 117 0.277866773041095 4 4 0 -5.76442394903818 LTS-023 chr16 75034269 75240145 205877 * c(ZFP1, LDHD, CTRB2, ZNRF1) 0.325066206045544 8 0.0555562777730834 1.09333926899447 197 0.382697721643931 6 4 2 -6.81558252125808 LTS-023 chr16 75240146 75240941 796 * CTRB2 NA 0 NA 0.776 1 NA NA NA NA NA LTS-023 chr16 75240942 75681603 440662 * c(CFDP1, GABARAPL2, TMEM170A, CTRB1, ADAT1, CHST5, KARS, CHST6, CTRB2, TMEM231, BCAR1) 0.420886463687226 30 0.119338502424488 0.813899651836239 642 0.244461031861669 4 2 2 -6.90161844174768 LTS-023 chr16 75681604 76343744 662141 * c(KARS, TERF2IP, CNTNAP4) 0 1 NA 0.824726270990433 71 0.104344087188432 3 3 0 -6.10251206913992 LTS-023 chr16 76343745 77245022 901278 * c(SYCE1L, MIR4719, MON1B, CNTNAP4) 0.271677080656751 18 0.197998976692411 0.936670821160732 294 0.290542833219196 4 3 1 -6.74505256560963 LTS-023 chr16 77245023 77245239 217 * SYCE1L 0.5 1 NA 0.893053412211846 7 0.128112487774649 4 4 0 -5.76447386205394 LTS-023 chr16 77245240 85146051 7900812 * c(LOC100129617, SYCE1L, MIR3182, MIR4720, CDH13, CLEC3A, MPHOSPH6, PKD1L2, C16orf46, DNAAF1, CDYL2, SLC38A8, ADAD2, ADAMTS18, ATMIN, COTL1, MLYCD, GCSH, NUDT7, OSGIN1, HSBP1, HSD17B2, FAM92B, MAF, WWOX, PLCG2, BCO1, NECAB2, ZDHHC7, CENPN, CMC2, VAT1L, TLDC1, WFDC1, KLHL36, CMIP, GAN, DYNLRB2, HSDL1, CRISPLD2, MBTPS1, TAF1C, USP10, KCNG4, SDR42E1, KIAA0513, ATP2C2) 0.37652042663149 155 0.142774125019316 0.81738242076693 3626 0.29277988877004 3 2 1 -7.18945200379131 LTS-023 chr16 85146052 85339752 193701 * c(LINC00311, FAM92B, LOC400548) NA 0 NA 0.197 1 NA NA NA NA NA LTS-023 chr16 85339753 88927753 3588001 * c(MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, EMC8, RNF166, ZC3H18, COX4I1, FLJ30679, LOC146513, CYBA, ZFPM1, SNAI3-AS1, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, GALNS, IL17C, SNAI3, IRF8, CTU2, APRT, FENDRR, C16orf74, MVD, GINS2, TRAPPC2L, KLHDC4, BANP, JPH3, MTHFSD, LINC00917, CA5A, FBXO31, SLC7A5, CDT1, MAP1LC3B, ZNF469, PIEZO1) 0.393013054381182 128 0.113400824449068 0.629610916759175 2932 0.301034222411154 3 2 1 -7.48366860884253 LTS-023 chr16 88927754 88928961 1208 * PABPN1L 0.201 1 NA 0.653611755067025 23 0.111785066917593 3 3 0 -5.76544287912187 LTS-023 chr16 88928962 89287504 358543 * c(CDH15, SLC22A31, ZNF778, ACSF3, LINC00304, PABPN1L, LOC400558, CBFA2T3) 0.190228479688517 17 0.217066268005608 0.663920296766425 445 0.310145210187041 3 2 1 -7.03822386960242 LTS-023 chr16 89287505 89293281 5777 * ZNF778 0.383 1 NA 0.696656621573411 33 0.411094322104632 3 3 0 -5.76450982227437 LTS-023 chr16 89293282 89663367 370086 * c(LOC100287036, ZNF778, CPNE7, ANKRD11, SNORD68, RPL13, SPG7) 0.396154249693522 32 0.116672683696604 0.655037154203698 583 0.215261129750269 3 2 1 -6.94847335935896 LTS-023 chr16 89663368 89702317 38950 * c(DPEP1, CPNE7) 0 1 NA 0.667201825703643 17 0.582009987027714 3 3 0 -5.76528974178115 LTS-023 chr16 89702318 89800514 98197 * c(VPS9D1-AS1, SPATA2L, SPATA33, DPEP1, CHMP1A, CDK10, ZNF276, VPS9D1) 0.224802206731836 13 0.20893533535277 0.640969733633473 460 0.214522913553585 3 2 1 -6.94116438199478 LTS-023 chr16 89800515 89804176 3662 * c(FANCA, ZNF276) NA 0 NA 0.845 1 NA NA NA NA NA LTS-023 chr16 89804177 89816325 12149 * c(FANCA, ZNF276) 0.441928513793861 2 0.0367695526217005 0.856020905114617 91 0.233843642385781 4 2 2 -7.52799384555671 LTS-023 chr16 89816326 89922616 106291 * c(FANCA, SPIRE2) 0.164096945401762 12 0.19583519663846 0.629425001195381 200 0.347093230310875 2 2 0 -6.93087274691186 LTS-023 chr16 89922617 89925556 2940 * SPIRE2 0.494 1 NA 0.628243678532568 7 0.413609258899773 3 3 0 -5.76471893646872 LTS-023 chr16 89925557 89973731 48175 * c(TCF25, SPIRE2) 0.295391265275713 4 0.184843176774259 0.676554175886315 131 0.171276396142358 3 2 1 -6.77805700570019 LTS-023 chr16 89973732 89975346 1615 * TCF25 NA 0 NA 0.865 1 NA NA NA NA NA LTS-023 chr16 89975347 89987202 11856 * c(TUBB3, TCF25, MC1R) 0.428813428516542 8 0.0403801135638395 0.901221689200483 89 0.201240229525736 4 2 2 -7.09118667124949 LTS-023 chr16 89987203 89987256 54 * c(TUBB3, MC1R) NA 0 NA 0.619 1 NA NA NA NA NA LTS-023 chr16 89987257 90124108 136852 * c(URAHP, TUBB3, PRDM7, AFG3L1P, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, CENPBD1) 0.370575978548762 27 0.117646253767985 0.646505454474627 428 0.225503726819282 3 2 1 -6.80571057660027 LTS-023 chr16 90124109 90161242 37134 * PRDM7 NA 0 NA 0.618029395477513 69 0.185817834692165 2 NA NA -5.78492919498912 LTS-023 chr17 6004 14008 8005 * DOC2B 0.073 1 NA 0.908808592783532 19 0.229668194428754 4 4 0 -5.76488665747693 LTS-023 chr17 14009 650044 636036 * c(LOC100506388, RFLNB, C17orf97, GEMIN4, VPS53, FAM57A, DOC2B, RPH3AL) 0.0296102550923381 13 0.0218593991988191 0.747184695303156 395 0.332677679615608 3 3 0 -6.84273189613977 LTS-023 chr17 650045 685640 35596 * c(DBIL5P, GEMIN4, GLOD4, MRM3) 0.052 1 NA 0.794892744385222 87 0.22019534837534 3 3 0 -5.76611332257263 LTS-023 chr17 685641 767388 81748 * c(MRM3, NXN) 0.244556194261514 9 0.159271867502638 0.858184068818355 121 0.298788438056518 4 3 1 -6.75221566593721 LTS-023 chr17 767389 800050 32662 * NXN 0.036 1 NA 1.12130544586722 3 0.484974569780038 5 5 0 -5.76486228667901 LTS-023 chr17 800051 2599827 1799777 * c(PITPNA-AS1, MIR3183, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, RILP, MIR22HG, SCARF1, SGSM2) 0.0372548168598458 99 0.0266692098354404 0.772240693140717 2736 0.403100468099951 3 3 0 -6.74307865859694 LTS-023 chr17 2599828 3923149 1323322 * c(MIR1253, P2RX5-TAX1BP3, CTNS, TRPV3, RAP1GAP2, ZZEF1, CLUH, SHPK, OR1A2, TAX1BP3, ITGAE, OR3A4P, ASPA, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, NCBP3, OR1D4, TRPV1, EMC6, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, CAMKK1, SPATA22) 0.0536029015135675 68 0.0710713620151116 0.929560520004458 1860 0.467124336285921 4 4 0 -6.80715476349209 LTS-023 chr17 3923150 5346150 1423001 * c(C17orf107, LOC100130950, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, ZFP3, GGT6, SPNS2, SPNS3, ENO3, CAMTA2, ZZEF1, ALOX15, RNF167, PELP1, GP1BA, VMO1, SMTNL2, GLTPD2, INCA1, SCIMP, MED11, ARRB2, NUP88, MINK1, ANKFY1, PFN1, PLD2, SLC52A1, DHX33, PSMB6, CXCL16, C1QBP, UBE2G1, ZNF232, SLC25A11, ZMYND15, RPAIN, ZNF594, TM4SF5, USP6, RABEP1, SPAG7) 0.0379030040788593 88 0.0228980949730765 0.768487301175233 3062 0.329218108349333 3 3 0 -6.74086798886622 LTS-023 chr17 5346151 6328879 982729 * c(NLRP1, WSCD1, AIPL1, LOC339166, DERL2, DHX33, LOC728392, MIS12) 0.0244903285700035 15 0.0223677063132161 0.878372012451251 465 0.263460254464007 4 4 0 -6.86469100629952 LTS-023 chr17 6328880 6588145 259266 * c(MIR4520-1, MIR4520-2, ALOX15P1, AIPL1, SLC13A5, MED31, FAM64A, PITPNM3, TXNDC17, KIAA0753) 0.016103904392785 11 0.0190911688294019 1.11431777990096 474 0.492138087495943 6 6 0 -6.80920118230596 LTS-023 chr17 6588146 7139432 551287 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, CLEC10A, SLC16A11, FBXO39, DLG4, DVL2, SLC16A13, ALOX12, ALOX12P2, BCL6B, SLC13A5, ACADVL, ASGR1, ASGR2, MIR324, XAF1, MIR497, PHF23, TEKT1) 0.0347251971310949 42 0.0228333481692433 0.860791460020682 1095 0.40564958971645 4 4 0 -6.79003004061826 LTS-023 chr17 7139433 7139499 67 * PHF23 NA 0 NA 0.699 1 NA NA NA NA NA LTS-023 chr17 7139500 8633500 1494001 * c(LOC100128288, MIR4314, NA, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4521, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, KRBA2, CLDN7, DNAH2, CCDC42, ODF4, KCTD11, EFNB3, EIF5A, C17orf74, FGF11, ARHGEF15, KDM6B, CTDNEP1, ELP5, ALOX12B, ALOX15B, TMEM256, SENP3, SNORA67, LOC284023, LINC00324, TMEM102, GPS2, RANGRF, GUCY2D, TMEM95, SPEM1, SLC25A35, TNFSF12-TNFSF13, MYH10, ATP1B2, YBX2, PER1, PFAS, POLR2A, NA NA NA NA NA NA NA NA NA LTS-023 BORCS6, WRAP53, PLSCR3, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, TP53, PHF23, CTC1, NDEL1, TMEM107, NAA38, NEURL4, HES7, TNK1, TNFSF13, TNFSF12, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, CD68, ACAP1) 0.0378995647521231 124 0.0359643987207835 0.755122151287867 5238 0.258808117534903 3 3 0 -6.73521553274491 LTS-023 NA NA NA NA LTS-023 chr17 8633501 8814923 181423 * c(CCDC42, PIK3R6, MFSD6L, PIK3R5, SPDYE4) 0.0191976959474503 20 0.022595469969839 1.18123425036774 345 0.824899288497981 6 6 0 -6.74190022351605 LTS-023 chr17 8814924 8925613 110690 * c(PIK3R5, NTN1) NA 0 NA 0.765 1 NA NA NA NA NA LTS-023 chr17 8925614 9480159 554546 * c(CFAP52, NTN1, STX8) 0.080725366211767 9 0.0342141945851588 0.691716208217851 217 0.310880380573899 2 2 0 -7.30931295320153 LTS-023 chr17 9480160 9487555 7396 * CFAP52 NA 0 NA 0.919 1 NA NA NA NA NA LTS-023 chr17 9487556 15469201 5981646 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, USP43, COX10, CDRT15, CFAP52, DNAH9, DHRS7C, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, PMP22, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, GAS7, MYH13, GLP2R, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.0337679558884648 104 0.0291928366892573 0.812523818542517 3582 0.36641149311717 3 3 0 -6.93603630264083 LTS-023 chr17 15469202 15476231 7030 * TRIM16 0.083434167878994 3 0.0925004504493537 0.418405220875562 57 0.286888373059089 1 1 0 -6.7600041598788 LTS-023 chr17 15476232 15554561 78330 * c(TRIM16, CDRT1) 0.038067162161907 4 0.0183915741577495 0.650014191611892 170 0.214183419708685 3 3 0 -6.75445443112248 LTS-023 chr17 15554562 15587226 32665 * TRIM16 0.061 1 NA 0.767079458972024 41 0.0750927394106456 3 3 0 -5.76686361994769 LTS-023 chr17 15587227 15622441 35215 * c(TRIM16, ZNF286A) 0.115756933765677 9 0.125189301104811 0.74510112500383 118 0.480831062030055 1 1 0 -6.82436826863123 LTS-023 chr17 15622442 15622548 107 * ZNF286A 0.01 1 NA 1.33346755407538 4 0.171052623481781 6 6 0 -5.76442230278684 LTS-023 chr17 15622549 18291618 2669070 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A NA NA NA NA NA NA NA NA NA LTS-023 ) 0.0385309118870368 98 0.0271854947647616 0.778651357294296 3822 0.307874178088568 3 3 0 -6.76226676025443 LTS-023 NA NA NA NA LTS-023 chr17 18291619 18314964 23346 * EVPLL 0.439 1 NA 0.549498278979643 3 0.423915478997091 2 2 0 -5.76470109740032 LTS-023 chr17 18314965 18380217 65253 * c(KRT17P5, LGALS9C, KRT16P1) 0.224891430870553 2 0.243244732728172 0.810045117545504 27 0.219469627463386 4 3 1 -6.7777856992675 LTS-023 chr17 18380218 18387136 6919 * LGALS9C NA 0 NA 0.622 1 NA NA NA NA NA LTS-023 chr17 18387137 18445528 58392 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.29984019027135 39 0.297248257044157 1 NA NA -5.76518224374147 LTS-023 chr17 18445529 18446953 1425 * CCDC144B NA 0 NA 0.777 1 NA NA NA NA NA LTS-023 chr17 18446954 18565350 118397 * c(TBC1D28, CCDC144B, ZNF286B) 0.300592022120395 7 0.20577472657068 0.73881310218059 167 0.4764181918077 3 2 1 -6.75545287050907 LTS-023 chr17 18565351 18565423 73 * ZNF286B 0.206 1 NA 0.218 1 NA NA NA NA NA LTS-023 chr17 18565424 18653070 87647 * c(FBXW10, TRIM16L, FOXO3B, ZNF286B) 0.150019304381008 9 0.118635997909572 0.706079362436975 183 0.35407757927375 6 5 1 -6.97855847514894 LTS-023 chr17 18653071 18678548 25478 * FBXW10 0.074 1 NA 0.677600651623244 53 0.250727713001103 3 3 0 -5.76671879035379 LTS-023 chr17 18678549 21117591 2439043 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.0329984993602495 56 0.0276356101443762 0.77266079629845 2194 0.361584064014837 3 3 0 -6.77437828435102 LTS-023 chr17 21117592 21194820 77229 * c(NATD1, MAP2K3, TMEM11) 0.358 1 NA 0.625523507649732 38 0.179055297131947 3 3 0 -5.80956634486996 LTS-023 chr17 21194821 21202123 7303 * MAP2K3 0.434221625299139 3 0.0762911091368668 0.888860206866502 22 0.319396102245895 4 2 2 -6.87503399441193 LTS-023 chr17 21202124 21319008 116885 * c(KCNJ12, MAP2K3) 0.36144220738756 60 0.0985311101176524 1.02881434901241 162 0.493489665230632 5 3 2 -6.763625519509 LTS-023 chr17 21319009 21319069 61 * KCNJ12 0.232 1 NA 1.20149729286285 3 0.72255403488828 5 5 0 -5.76441013610704 LTS-023 chr17 21319070 21431659 112590 * c(C17orf51, KCNJ12) 0.28972947783206 19 0.0910534513028037 1.25777415495302 65 0.740506682369994 7 5 2 -6.74338208388613 LTS-023 chr17 21431660 22066835 635176 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.314948311079872 7 0.135297203715869 0.749262120231872 199 0.282891602919 3 2 1 -6.75425398198331 LTS-023 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.488 1 NA NA NA NA NA LTS-023 chr17 25620838 25912628 291791 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0 1 NA 1.12559687143914 105 0.331696214561726 5 5 0 -5.77216378982108 LTS-023 chr17 25912629 28001004 2088376 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, NA NA NA NA NA NA NA NA NA LTS-023 FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.0178633223808319 61 0.0202047578663333 1.11713371233785 4150 0.387074536789172 5 5 0 -6.84678498615658 LTS-023 NA NA NA NA LTS-023 chr17 28001005 28001103 99 * SSH2 NA 0 NA 1.065 1 NA NA NA NA NA LTS-023 chr17 28001104 30701530 2700427 * c(MIR365B, MIR3184, MIR4724, MIR4733, MIR4725, LRRC37B, CPD, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TBC1D29, EFCAB5, TMIGD1, MIR193A, SUZ12P1, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, SSH2, GOSR1) 0.024629846155987 62 0.0219423069302539 1.05332453821234 2898 0.358079792361751 4 4 0 -6.84022270195667 LTS-023 chr17 30701531 30791503 89973 * c(PSMD11, ZNF207) 0.266 1 NA 1.11839106596048 181 0.189425897696783 5 5 0 -5.7731494262099 LTS-023 chr17 30791504 31618562 827059 * c(SPACA3, TMEM98, ASIC2, MYO1D, PSMD11, CDK5R1) 0.0330147403770576 15 0.0207139244631882 1.01436449960266 429 0.395601233143093 4 4 0 -6.74967431091043 LTS-023 chr17 31618563 36234012 4615450 * c(MIR2909, AA06, SLFN12L, RAD51L3-RFFL, CCT6B, DDX52, DUSP14, SYNRG, RFFL, TMEM132E, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, AATF, PIGW, C17orf78, YWHAEP7, ACACA, SLFN14, CCL15-CCL14, CCL4L1, LHX1, LIG3, ASIC2, C17orf102, TBC1D3B, TBC1D3C, CCL3L3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, NA NA NA NA NA NA NA NA NA LTS-023 CCL16, CCL18, CCL23, NA, TADA2A, SNORD7, HNF1B, TBC1D3H, MMP28, DHRS11, GGNBP2, MRM1, MYO19, TAF15, ZNF830, SLFN11, RASL10B, ZNHIT3) 0.0465638014064659 105 0.0463668620615618 0.666613443740318 4154 0.291308662663626 3 3 0 -7.14418384815409 LTS-023 NA NA NA NA LTS-023 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 1.001 1 NA NA NA NA NA LTS-023 chr17 36351756 36398345 46590 * LOC440434 0.190172361961271 2 0.096873629022557 1.05982658848356 63 0.238925146869164 5 4 1 -6.78135071564952 LTS-023 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.671 1 NA NA NA NA NA LTS-023 chr17 36421727 39155690 2733964 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, MED1, NA NA NA NA NA NA NA NA NA LTS-023 CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, PCGF2, CACNB1, SRCIN1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, TNS4, FBXL20, KRTAP3-3, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.044182486490224 124 0.0336417036970822 0.689943930527895 5829 0.25872950602972 3 3 0 -6.89765996159466 LTS-023 NA NA NA NA LTS-023 chr17 39155691 39155758 68 * KRTAP3-2 0.043 1 NA 3.168 1 NA NA NA NA NA LTS-023 chr17 39155759 41331460 2175702 * c(KRTAP4-9, KRTAP4-7, RAMP2-AS1, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR5010, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, NT5C3B, CNTD1, CNP, RUNDC1, LINC00974, FAM134C, ZNF385C, EZH1, KCNH4, GAST, G6PC, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, IFI35, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, NA NA NA NA NA NA NA NA NA LTS-023 KRT33A, LINC00671, KRT33B, KRT34, KRT35, NBR1, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, RPL27, WNK4, KRTAP4-11, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, DHX58, PLEKHH3, COASY, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, VPS25, GHDC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 KRTAP4-4, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP2-4, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, HSPB9) 0.039050426798093 170 0.0281047590273618 0.773858387969553 5194 0.322973735123989 3 3 0 -6.74864805389805 LTS-023 NA NA NA NA LTS-023 chr17 41331461 41361960 30500 * NBR1 0.102 1 NA 0.784628608626815 98 0.371444102994629 3 3 0 -5.7647311049979 LTS-023 chr17 41361961 41466055 104095 * c(LINC00910, LINC00854, TMEM106A, NBR1) 0.120450936073735 9 0.118517345190951 0.663998468398748 85 0.255505292747232 2 2 0 -6.96469265906609 LTS-023 chr17 41466056 41477093 11038 * c(LINC00910, ARL4D) 0.044 1 NA 1.07981442011288 5 0.400433764810112 4 4 0 -5.76482360361182 LTS-023 chr17 41477094 44159874 2682781 * c(MAP3K14-AS1, HDAC5, MIR2117, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, ARL4D, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, NA NA NA NA NA NA NA NA NA LTS-023 ASB16, EFTUD2) 0.0286449381255475 89 0.0287391228258054 0.767670462341571 4049 0.331738774896691 3 3 0 -6.82148389084134 LTS-023 NA NA NA NA LTS-023 chr17 44159875 44782233 622359 * character(0) 0.044 1 NA 0.416852865818862 114 0.25323419991425 2 2 0 -6.02257778442727 LTS-023 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.688 1 NA NA NA NA NA LTS-023 chr17 44788332 45196785 408454 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.0329713720194544 5 0.021466252583998 0.780366408782973 235 0.224550304078279 3 3 0 -6.78994298974622 LTS-023 chr17 45196786 45214473 17688 * CDC27 0.419 1 NA 0.711767791324582 53 0.134240004506367 3 3 0 -5.76578161172874 LTS-023 chr17 45214474 45249372 34899 * CDC27 0.321810335041642 15 0.136149322786557 0.633861974565531 77 0.215355727906264 3 2 1 -6.75635576944672 LTS-023 chr17 45249373 45258951 9579 * CDC27 0.043 1 NA 0.832432158898687 7 0.169298412222184 3 3 0 -5.7667624514361 LTS-023 chr17 45258952 48141579 2882628 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-023 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0404184837614452 76 0.0264730117454965 0.74286513244669 3874 0.321525720618351 3 3 0 -6.73515462996585 LTS-023 NA NA NA NA LTS-023 chr17 48141580 48141822 243 * ITGA3 NA 0 NA 1.172 1 NA NA NA NA NA LTS-023 chr17 48141823 48275615 133793 * c(COL1A1, SAMD14, ITGA3, HILS1, PDK2, SGCA, PPP1R9B) 0.0393042011351308 27 0.0187990573807454 1.002291023762 687 0.316406031307128 3 3 0 -6.80167819794089 LTS-023 chr17 48275616 48275787 172 * COL1A1 NA 0 NA 0.275 1 NA NA NA NA NA LTS-023 chr17 48275788 55065696 6789909 * c(TOM1L1, MIR3614, C17orf112, TOB1, CHAD, WFIKKN2, COL1A1, COX11, EME1, ANKFN1, TMEM92, MMD, MTVR2, STXBP4, CACNA1G-AS1, HLF, C17orf67, TOB1-AS1, NME1, NME2, UTP18, MRPL27, LUC7L3, MBTD1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, CA10, PCTP, SCPEP1, XYLT2, SPATA20, NME1-NME2, TRIM25, ACSF2, COIL, MYCBPAP, KIF2B, DGKE, ABCC3, CACNA1G, SPAG9, ANKRD40, NOG) 0.0412166188192032 81 0.0307078427268714 0.771343317299014 3332 0.288933755000582 3 3 0 -6.78595573930024 LTS-023 chr17 55065697 55068440 2744 * SCPEP1 NA 0 NA 1.433 1 NA NA NA NA NA LTS-023 chr17 55068441 55083627 15187 * SCPEP1 NA 0 NA 1.47219050874877 39 0.440995851942509 6 NA NA -5.76443745815519 LTS-023 chr17 55083628 55123528 39901 * c(RNF126P1, SCPEP1) NA 0 NA 0.597 1 NA NA NA NA NA LTS-023 chr17 55123529 72838738 17715210 * c(SNORA38B, CD300LD, LINC00674, LINC00673, MIR3615, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, CD300C, TLK2, POLG2, CD300A, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, CD300LB, KIF19, C17orf64, DYNLL2, CSH1, CSH2, CSHL1, CD300LF, C17orf77, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, SLC39A11, AMZ2P1, ERN1, BPTF, NA NA NA NA NA NA NA NA NA LTS-023 PPM1E, ARSG, ABCA6, ABCA5, CDC42EP4, NOL11, TANC2, NAT9, PITPNC1, OR4D1, GH1, GH2, CACNG5, CACNG4, LINC00469, C17orf58, MILR1, C17orf47, GDPD1, GRIN2C, RAB37, ICAM2, METTL2A, CD300E, NACA2, SKA2, APOH, GPR142, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, KCNJ2-AS1, LINC00511, LOC400620, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TUBD1, TACO1, AMZ2, MRPS23, PTRH2, PECAM1, SEPT4, SDK2, FAM20A, BCAS3, TMEM104, RNF43, MKS1, C17orf80, WIPI1, SMG8, MSX2P1, PRKAR1A, PRR11, PRKCA, TEX2, GPRC5C, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPL38, RPS6KB1, SCN4A, HEATR6, SRSF1, CPSF4L, DNAI2, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SOX9, SSTR2, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, LOC729683, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 CA4, MIR454, VEZF1, CACNG1, DHX40, LIMD2, KCNH6, AKAP1, VMP1, EPX, AXIN2, BRIP1, USP32, FAM104A, PPM1D, MGC16275, RGS9, CEP95, MTMR4, SLC16A6, STRADA, PRR29, TSPOAP1, SLC9A3R1, COG1, TTYH2, TBX4, CD79B, MRC2, HELZ, MED13) 0.0360016043802528 319 0.0314338032837318 0.762081579781144 11718 0.482294082030812 3 3 0 -6.75693424678201 LTS-023 NA NA NA NA LTS-023 chr17 72838739 72846459 7721 * GRIN2C 0.065 1 NA 0.75024015620255 55 0.175597245401494 3 3 0 -5.76441301348555 LTS-023 chr17 72846460 72916543 70084 * c(USH1G, FDXR, FADS6, GRIN2C) 0.148472649115177 9 0.178611309832272 0.769943267564618 177 0.274559863264216 5 4 1 -6.92651973805095 LTS-023 chr17 72916544 72926879 10336 * c(USH1G, OTOP2) 0.039 1 NA 0.851285743988949 45 0.393938455942939 3 3 0 -5.76509297676298 LTS-023 chr17 72926880 80363378 7436499 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, SLC25A10, NOTUM, NA NA NA NA NA NA NA NA NA LTS-023 TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, GCGR, UTS2R, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, SAP30BP, H3F3B, NT5C, CDR2L, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, OTOP3, MCRIP1, ZACN, ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.0370558049315253 435 0.0269425643630741 0.776070146243011 12119 0.360792835802633 3 3 0 -6.78596916838575 LTS-023 NA NA NA NA LTS-023 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.869 1 NA NA NA NA NA LTS-023 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.0455041168655247 3 0.0277368587502863 1.53493751506302 39 0.658360588103215 3 3 0 -6.78200054018491 LTS-023 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.687 1 NA NA NA NA NA LTS-023 chr17 80391535 81043068 651534 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0432845673891164 30 0.0244612055040761 0.744042601124207 874 0.245522161288541 3 3 0 -6.75111315653076 LTS-023 chr17 81043069 81083625 40557 * METRNL NA 0 NA 0.81007571711599 23 0.18182030828796 3 NA NA -5.76924897931298 LTS-023 chr18 116845 120881 4037 * ROCK1P1 0.064 1 NA 0.680282584768854 19 0.304128810429616 3 3 0 -5.76463904368548 LTS-023 chr18 120882 910891 790010 * c(CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, ROCK1P1, TYMS, YES1, COLEC12, USP14, THOC1) 0.0470048886292465 28 0.0319924552944471 0.627112324471894 674 0.253691458743906 3 3 0 -6.98717210090178 LTS-023 chr18 910892 3089611 2178720 * c(NDC80, ADCYAP1, SMCHD1, LINC00470, CBX3P2, METTL4, LOC727896, EMILIN2, MYOM1, LPIN2) 0.0409282252439909 25 0.0237028127726085 0.734298036087503 768 0.282090856854805 3 3 0 -6.74162185034358 LTS-023 chr18 3089612 3100429 10818 * MYOM1 0.033 1 NA 0.809732348815779 15 0.463559591895255 3 3 0 -5.76460676528924 LTS-023 chr18 3100430 3451847 351418 * c(MYL12B, MYL12A, TGIF1, MYOM1) 0.0448945008051987 14 0.0122276933031739 0.725853628331115 213 0.260782630618451 3 3 0 -6.86991252196872 LTS-023 chr18 3451848 3451897 50 * TGIF1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-023 chr18 3451898 6915366 3463469 * c(LINC01387, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LINC00667, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, TGIF1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.0371490789711522 35 0.0295401734717231 0.819072864127493 1018 0.29703101066342 3 3 0 -6.92914968420954 LTS-023 chr18 6915367 9255982 2340616 * c(LOC100192426, RAB12, ANKRD12, MTCL1, LAMA1, LRRC30, LINC00668, NDUFV2, PTPRM, ARHGAP28) 0.0423482070312643 31 0.025804934095167 0.694511330164495 983 0.335466222279937 3 3 0 -6.80828683610995 LTS-023 chr18 9255983 9283590 27608 * ANKRD12 NA 0 NA 0.670851915703832 136 0.186838333178976 3 NA NA -5.76988526780762 LTS-023 chr18 9283591 9512985 229395 * c(RALBP1, ANKRD12, TWSG1) 0.492 1 NA 1.31363373146361 89 0.292549422240968 5 5 0 -5.77590737323968 LTS-023 chr18 9512986 10696167 1183182 * c(RALBP1, RAB31, APCDD1, PIEZO2, TXNDC2, NAPG, VAPA, PPP4R1) 0.371139837851706 18 0.175939346352006 1.35515437413566 650 0.431159742481603 6 3 3 -6.75880508577023 LTS-023 chr18 10696168 10696227 60 * PIEZO2 0.442 1 NA 2.402 1 NA NA NA NA NA LTS-023 chr18 10696228 10797362 101135 * PIEZO2 0.473630425539434 10 0.0158257876756753 1.3729193186783 192 0.381170764518196 6 3 3 -11.967990569204 LTS-023 chr18 10797363 10800444 3082 * PIEZO2 0 1 NA 1.52105436088888 9 1.35512319038201 6 6 0 -5.76441338259251 LTS-023 chr18 10800445 12662191 1861747 * c(PRELID3A, AFG3L2, CIDEA, GNAL, ANKRD62, IMPA2, C18orf61, SPIRE1, PSMG2, CHMP1B, PIEZO2, MPPE1, CEP76, TUBB6) 0.373464298784022 35 0.146261518974654 1.34928260407442 902 0.696238523174887 6 3 3 -6.75729449721068 LTS-023 chr18 12662192 13125086 462895 * c(CEP192, PSMG2, PTPN2, CEP76, SEH1L) 0.345804915939391 16 0.140798185949488 1.86426628410193 535 0.517546636037024 8 5 3 -6.74494273876917 LTS-023 chr18 13125087 13387699 262613 * LDLRAD4 NA 0 NA 1.161 1 NA NA NA NA NA LTS-023 chr18 13387700 13826837 439138 * c(LDLRAD4-AS1, MIR4526, MIR5190, FAM210A, MC5R, LDLRAD4, RNMT) 0.410770041801984 9 0.150594654619611 1.2941360246785 298 0.324268091589232 6 3 3 -6.76562555613015 LTS-023 chr18 13826838 13885607 58770 * c(MC2R, MC5R) 0.433 1 NA 1.39772006724279 27 0.384322061939524 6 6 0 -5.76459409468351 LTS-023 chr18 13885608 15005895 1120288 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, CXADRP3, ANKRD20A5P) 0.208182993692606 9 0.209754883402297 1.25265467761472 223 0.622470217809617 5 4 1 -6.73610442036881 LTS-023 chr18 15005896 15006193 298 * character(0) NA 0 NA 1.35546874127505 11 0.541761168446358 6 NA NA -5.76441220923405 LTS-023 chr18 18529727 19041484 511758 * c(ROCK1, GREB1L) 0 1 NA 1.23279426926097 271 0.254171194026045 5 5 0 -5.76652952826608 LTS-023 chr18 19041485 20951338 1909854 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, CTAGE1, SNRPD1, GREB1L, TMEM241, CABLES1) 0.26626233138271 11 0.233683896827239 1.30874335328201 873 0.340372448763522 5 4 1 -6.82550167029496 LTS-023 chr18 20951339 20953720 2382 * TMEM241 0.423 1 NA 1.32924864792777 9 0.502940105778014 6 6 0 -5.76444448515847 LTS-023 chr18 20953721 21474947 521227 * c(ANKRD29, C18orf8, LAMA3, NPC1, TMEM241, RIOK3) 0.328579967265321 12 0.211649295397892 1.3295601282283 759 0.415695753431503 6 4 2 -6.74455084368459 LTS-023 chr18 21474948 21495372 20425 * LAMA3 0 1 NA 1.27923307444235 79 0.31611669934997 5 5 0 -5.76482402540135 LTS-023 chr18 21495373 22040699 545327 * c(MIR320C2, OSBPL1A, TTC39C, CABYR, LAMA3, IMPACT, HRH4) 0.107489918703217 6 0.20289940036054 1.34109281101485 523 0.459882249333873 6 5 1 -6.81831893318983 LTS-023 chr18 22040700 22040723 24 * HRH4 NA 0 NA 1.617 1 NA NA NA NA NA LTS-023 chr18 22040724 22057108 16385 * HRH4 0 3 0 1.88326267273399 19 2.32294795691301 0 0 0 -Inf LTS-023 chr18 22057109 22805812 748704 * c(ZNF521, HRH4, LOC729950) 0.481 1 NA 1.53106935269139 100 0.362288814973007 6 6 0 -5.77812048689679 LTS-023 chr18 22805813 23738290 932478 * c(PSMA8, ZNF521, SS18) 0.188339648277276 2 0.324562012564625 1.54959428641301 151 0.482975660884296 6 5 1 -6.74693160781486 LTS-023 chr18 23738291 23748041 9751 * PSMA8 NA 0 NA 0.057 1 NA NA NA NA NA LTS-023 chr18 23748042 23750603 2562 * PSMA8 NA 0 NA 0.0398553367644041 41 0.0316587367049934 0 NA NA -5.95203746012349 LTS-023 chr18 23750604 23758789 8186 * PSMA8 NA 0 NA 1.035 1 NA NA NA NA NA LTS-023 chr18 23758790 25625441 1866652 * c(CDH2, PSMA8, AQP4-AS1, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.273255789506472 11 0.14874682578737 2.22438177568691 472 0.591405051738375 10 7 3 -6.76883505424221 LTS-023 chr18 25625442 28898350 3272909 * c(CDH2, MIR302F, DSC1, DSC2, DSC3, DSG1) 0.288589891927445 16 0.151300088125112 1.24004306529844 379 0.482889138668523 5 4 1 -6.8767957301559 LTS-023 chr18 28898351 28906459 8109 * DSG1 NA 0 NA 1.531 1 NA NA NA NA NA LTS-023 chr18 28906460 28911801 5342 * DSG1 0 1 NA 1.39436837673882 21 0.421597573861276 6 6 0 -5.76442653501231 LTS-023 chr18 28911802 28919884 8083 * DSG1 0.462 1 NA 1.54077461342336 27 0.228345610749841 6 6 0 -5.76486168783698 LTS-023 chr18 28919885 28993501 73617 * c(DSG4, DSG1) 0.47267205308633 11 0.0235796522451032 1.5627438754815 187 0.356907796826534 6 3 3 -10.105717176884 LTS-023 chr18 28993502 28993757 256 * DSG4 0 1 NA 1.76840722074855 5 1.65936795196243 7 7 0 -5.76441032804393 LTS-023 chr18 28993758 29412142 418385 * c(DSG2-AS1, SLC25A52, DSG4, DSG2, DSG3, TRAPPC8, TTR, B4GALT6) 0.198826246488838 10 0.243611462054733 1.5123728726874 463 0.731009934650355 6 5 1 -6.73743725816315 LTS-023 chr18 29412143 29419305 7163 * TRAPPC8 NA 0 NA 1.078 1 NA NA NA NA NA LTS-023 chr18 29419306 29450527 31222 * TRAPPC8 0.293071130636483 2 0.0544472221513642 0.957640843409293 60 0.272351100147241 7 5 2 -6.8097037602654 LTS-023 chr18 29450528 29451065 538 * TRAPPC8 0 1 NA 0.899431687820866 7 0.470878055187479 4 4 0 -5.76442007794108 LTS-023 chr18 29451066 29477850 26785 * TRAPPC8 NA 0 NA 1.0940764629538 23 1.11901169692976 5 NA NA -5.76453402424111 LTS-023 chr18 29477851 29480876 3026 * TRAPPC8 NA 0 NA 0.695 1 NA NA NA NA NA LTS-023 chr18 29480877 29523077 42201 * TRAPPC8 NA 0 NA 0.609850182506118 51 0.124573304665543 2 NA NA -5.80866779920144 LTS-023 chr18 29523078 29598302 75225 * TRAPPC8 NA 0 NA 1.36 1 NA NA NA NA NA LTS-023 chr18 29598303 32386356 2788054 * c(DTNA, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, ASXL3, NOL4) 0.0231698226385839 18 0.0226696220679985 1.13587667540203 971 0.456980079949265 5 5 0 -6.76452504889554 LTS-023 chr18 32386357 32391927 5571 * DTNA NA 0 NA 1.484 1 NA NA NA NA NA LTS-023 chr18 32391928 33171843 779916 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, GALNT1, ZNF24, ZNF397) 0.0216857039850785 24 0.024454038521275 1.33816878893657 790 0.563239554903013 6 6 0 -6.7414511496356 LTS-023 chr18 33171844 33234489 62646 * GALNT1 NA 0 NA 2.485 1 NA NA NA NA NA LTS-023 chr18 33234490 34156498 922009 * c(SLC39A6, GALNT1, MIR187, MOCOS, RPRD1A, ELP2, FHOD3, C18orf21) 0.009759139680783 7 0.0105627377403507 1.91428437432928 671 0.507973583997516 9 9 0 -6.86509574970639 LTS-023 chr18 34156499 47010187 12853689 * c(MIR4319, MIR4318, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, MIR5583-2, MIR5583-1, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, SMAD2, SMAD7, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, PIK3C3, DYM, CELF4, KIAA1328, EPG5, RIT2, KC6, MIR924HG, SKOR2, SLC14A1, SYT4, FHOD3, SLC14A2, KATNAL2, HDHD2, PSTPIP2, PIAS2, CTIF) 0.0155389937546234 48 0.0197704804484646 1.31237483373278 3307 0.546052223672735 6 6 0 -6.97983215583823 LTS-023 chr18 47010188 47018052 7865 * c(SNORD58C, MIR1539, RPL17-C18orf32, SNORD58B, SNORD58A, C18orf32, RPL17) 0.011 2 0 2.40462107544147 39 0.719501428068946 0 0 0 -Inf LTS-023 chr18 47018053 47088678 70626 * c(RPL17-C18orf32, SNORD58B, RPL17, LIPG) NA 0 NA 1.125 1 NA NA NA NA NA LTS-023 chr18 47088679 50592610 3503932 * c(LINC01630, MIR4320, ACAA2, DCC, SKA1, CFAP53, CXXC1, SMAD4, MBD1, ME2, MYO5B, MEX3C, ELAC1, MAPK4, SCARNA17, MRO, LIPG) 0.016094483434965 29 0.0162162115563833 1.34625429603359 1316 0.547169874424997 6 6 0 -6.81126434868109 LTS-023 chr18 50592611 50683760 91150 * DCC NA 0 NA 0.743 1 NA NA NA NA NA LTS-023 chr18 50683761 52570345 1886585 * c(POLI, STARD6, C18orf54, DCC, DYNAP, RAB27B, SNORA37, CCDC68, MBD2) 0.0241163718511825 17 0.0320458082052772 0.769225560945411 749 0.417724707076949 3 3 0 -6.86605590099758 LTS-023 chr18 52570346 52604083 33738 * CCDC68 0.044 1 NA 0.792306519960746 51 0.188770369891622 3 3 0 -5.76638237103237 LTS-023 chr18 52604084 63548826 10944743 * c(CDH7, LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, HMSD, LOC284294, GRP, RAX, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, MC4R, NARS, SERPINB2, ST8SIA3, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, SERPINB3, SERPINB4, TCF4, CCDC68, SERPINB7, TNFRSF11A, NA NA NA NA NA NA NA NA NA LTS-023 SERPINB12, SERPINB11, SEC11C, TXNL1, ONECUT2, VPS4B) 0.0386981271259871 135 0.04651135966858 0.763580853695678 4634 0.55549473852322 3 3 0 -6.74334833732134 LTS-023 NA NA NA NA LTS-023 chr18 63548827 63548842 16 * character(0) 0.08 1 NA 1.674 1 NA NA NA NA NA LTS-023 chr18 63548843 65176856 1628014 * c(MIR5011, CDH19, DSEL) 0.0308922204717336 9 0.0256807320767925 0.914820353097068 283 0.339565671852056 4 4 0 -6.77006645127008 LTS-023 chr18 65176857 65176955 99 * DSEL NA 0 NA 0.784 1 NA NA NA NA NA LTS-023 chr18 65176956 74980809 9803854 * c(LOC100131655, LINC01541, LOC100505817, TSHZ1, CD226, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, GALR1, RTTN, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, LOC400655, LINC00909, C18orf65, MBP, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, NETO1, CNDP1, DSEL, SOCS6, ZNF516) 0.0415153500108629 70 0.0384876200148819 0.732564613427074 2528 0.248665601302245 3 3 0 -6.77132947082956 LTS-023 chr18 74980810 74980913 104 * GALR1 NA 0 NA 0.668836096627366 3 0.0363730669589464 3 NA NA -5.76498020511503 LTS-023 chr18 76740284 76753768 13485 * SALL3 0.134 1 NA 0.431290008900784 31 0.120162765957599 2 2 0 -5.78273593340046 LTS-023 chr18 76753769 77918221 1164453 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, SALL3, ATP9B, HSBP1L1, NFATC1, RBFA, PQLC1, PARD6G, CTDP1) 0.0827953937291826 20 0.0378591225188162 0.423129087384654 878 0.21859731551946 2 2 0 -7.55448368297052 LTS-023 chr18 77918222 78005362 87141 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.38973666409054 37 0.116821242514804 2 NA NA -6.05543309846918 LTS-023 chr19 107416 107456 41 * character(0) 0.286 1 NA 3.002 1 NA NA NA NA NA LTS-023 chr19 107457 758427 650971 * c(FSTL3, MISP, C2CD4C, SHC2, FGF22, ODF3L2, GZMM, LINC01002, PRSS57, PALM, THEG, POLRMT, MIER2, RNF126, HCN2, BSG, OR4F17, MADCAM1, PLPP2, TPGS1, CDC34) 0.407887383345192 27 0.126241831418908 0.79173807251327 814 0.269478500833534 3 2 1 -6.91788992955728 LTS-023 chr19 758428 920770 162343 * c(MED16, MIR3187, MIR4745, MISP, CFD, ELANE, PRTN3, AZU1, PTBP1, PLPPR3, KISS1R, R3HDM4) 0.311241234734997 13 0.150733208019998 1.09209078604746 414 0.372748260720411 4 3 1 -6.79742130443824 LTS-023 chr19 920771 929585 8815 * c(ARID3A, KISS1R) NA 0 NA 0.824 1 NA NA NA NA NA LTS-023 chr19 929586 1581177 651592 * c(APC2, ABCA7, CIRBP, GRIN3B, CNN2, PLK5, CIRBP-AS1, C19orf25, ARID3A, EFNA2, SBNO2, ARHGAP45, CBARP, GAMT, DAZAP1, GPX4, ADAMTSL5, NDUFS7, MEX3D, ATP5D, MBD3, POLR2E, PCSK4, C19orf24, WDR18, RPS15, STK11, MUM1, MIDN, TMEM259, REEP6) 0.418941026186921 99 0.11196216727837 0.78146460751477 1950 0.235413253624015 3 2 1 -7.02890737453008 LTS-023 chr19 1581178 1585042 3865 * MBD3 0 1 NA 0.981506698645177 11 0.685122218692004 4 4 0 -5.76441023941968 LTS-023 chr19 1585043 1779674 194632 * c(UQCR11, ONECUT3, MBD3, TCF3) 0.231066673759933 9 0.233195197206117 0.718550615044169 245 0.293544637888211 3 2 1 -6.86417144627237 LTS-023 chr19 1779675 1782577 2903 * ATP8B3 0.467 1 NA 0.711587567821756 43 0.208786352197138 3 3 0 -5.76450415664707 LTS-023 chr19 1782578 4090422 2307845 * c(C19orf71, LOC100288123, MIR1909, MIR1227, MIR4321, HMG20B, IZUMO4, SCAMP4, ADAT3, ZNF554, MRPL54, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, CSNK1G2, ATP8B3, DIRAS1, ZNF555, DAPK3, AES, EEF2, ZFR2, PIP5K1C, CSNK1G2-AS1, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MKNK2, SLC39A3, TMPRSS9, C19orf35, CACTIN-AS1, MATK, GADD45B, NFIC, OAZ1, ZBTB7A, FZR1, PIAS4, LSM7, PLEKHJ1, BTBD2, MAP2K2, NA NA NA NA NA NA NA NA NA LTS-023 NCLN, SPPL2B, REXO1, ZNF77, CACTIN, CELF5, SGTA, LINGO3, TBXA2R, MIR637, THOP1, TLE2, TLE6, ZNF556, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, LMNB2, RAX2, ATCAY, S1PR4, AP3D1, APBA3) 0.397724110707475 136 0.137882463128362 0.789584967852671 4005 0.247582910316013 3 2 1 -6.90370742971293 LTS-023 NA NA NA NA LTS-023 chr19 4090423 4090622 200 * MAP2K2 0 1 NA 0.801649809398388 5 0.619631987553903 3 3 0 -5.76441168716939 LTS-023 chr19 4090623 4198154 107532 * c(ANKRD24, SIRT6, MAP2K2, CREB3L3) 0.182066103721988 9 0.231712345616523 0.812136757705948 171 0.442993994217719 5 4 1 -6.79651756001492 LTS-023 chr19 4198155 4198169 15 * ANKRD24 0.37 1 NA 0.235 1 NA NA NA NA NA LTS-023 chr19 4198170 4511737 313568 * c(CHAF1A, MIR4746, EBI3, TMIGD2, ANKRD24, STAP2, CCDC94, SHD, SH3GL1, PLIN4, FSD1, UBXN6, HDGFRP2, MPND) 0.386464187960518 30 0.16054281485728 0.786383331399062 818 0.299871054469833 3 2 1 -6.7875255761001 LTS-023 chr19 4511738 4511791 54 * PLIN4 0.309 1 NA 1.64189296336248 3 1.91122848799753 7 7 0 -5.76441013667189 LTS-023 chr19 4511792 4555401 43610 * c(SEMA6B, LRG1, PLIN5, PLIN4) 0.166182199915225 9 0.213468056418545 0.865575148661504 180 0.443636604521661 6 5 1 -6.76992606687616 LTS-023 chr19 4555402 4558407 3006 * SEMA6B 0.489 1 NA 0.788377761115826 25 0.187928603464188 3 3 0 -5.76455878633315 LTS-023 chr19 4558408 5455978 897571 * c(DPP9-AS1, MIR4747, PLIN3, SEMA6B, TNFAIP8L1, TICAM1, ZNRF4, KDM4B, MIR7-3HG, UHRF1, MIR7-3, FEM1A, MYDGF, PTPRS, ARRDC5, DPP9) 0.363934782303235 35 0.15999282021706 0.797193757521523 801 0.299492506507979 3 2 1 -6.77129467521099 LTS-023 chr19 5455979 5684301 228323 * c(C19orf70, ZNRF4, TINCR, HSD11B1L, SAFB, SAFB2) 0 1 NA 0.810026862523518 257 0.197640412164798 3 3 0 -5.78736155063107 LTS-023 chr19 5684302 5787245 102944 * c(PRR22, CATSPERD, RPL36, HSD11B1L, DUS3L, LONP1) 0.19233035232731 11 0.190635158447658 0.824288576544657 341 0.358647246618919 5 4 1 -6.81076555512859 LTS-023 chr19 5787246 5827765 40520 * c(NRTN, DUS3L) 0.459 1 NA 0.712598258412804 51 0.135637174613949 3 3 0 -5.76733997145599 LTS-023 chr19 5827766 6496168 668403 * c(LOC100128568, MIR3940, TUBB4A, ACER1, NDUFA11, FUT3, FUT5, FUT6, SLC25A41, GTF2F1, VMAC, MLLT1, NRTN, PSPN, RFX2, SLC25A23, DENND1C, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, CRB3) 0.444270245074856 29 0.0443561770596808 0.790684733557758 1025 0.448104290350458 4 2 2 -7.44190516758106 LTS-023 chr19 6496169 6501460 5292 * TUBB4A 0 1 NA 0.963062748187001 7 2.90832899986033 4 4 0 -5.76441021209616 LTS-023 chr19 6501461 6697342 195882 * c(TUBB4A, C3, TNFSF14, TNFSF9, CD70) 0.245353564249302 14 0.218816195635806 0.751127412566613 190 0.670815035652841 4 3 1 -6.75590920831058 LTS-023 chr19 6697343 6697406 64 * C3 0.473 1 NA 1.21985507297631 3 0.629388062592018 5 5 0 -5.76441014531074 LTS-023 chr19 6697407 8922160 2224754 * c(LOC100128573, PET100, SH2D3A, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ZNF558, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, KANK3, ACTL9, OR2Z1, MBD3L5, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, GPR108, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, NA NA NA NA NA NA NA NA NA LTS-023 STXBP2, C3, VAV1, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B, PEX11G, TRIP10) 0.368999460315021 151 0.159071880679641 0.803080972225658 3640 0.31989800286698 3 2 1 -6.82002402981206 LTS-023 NA NA NA NA LTS-023 chr19 8922161 8922213 53 * ZNF558 NA 0 NA 1.068 1 NA NA NA NA NA LTS-023 chr19 8922214 9001822 79609 * c(ZNF558, MBD3L1, MUC16) 0.261491357277479 8 0.133732141664918 1.07803022613037 206 0.455926120469693 4 3 1 -6.73569027596376 LTS-023 chr19 9001823 9001835 13 * MUC16 0.084 1 NA 1.23947738359664 2 0.329511760032931 5 5 0 -5.76441018131325 LTS-023 chr19 9001836 9213082 211247 * c(OR1M1, OR7G2, MUC16) 0.198715173205696 60 0.187446561122994 1.22752886942175 1031 1.27636666587973 5 4 1 -6.73773619023922 LTS-023 chr19 9213083 9226017 12935 * c(OR7G1, OR7G2) 0.4 1 NA 1.09883478857511 31 0.304904726878936 5 5 0 -5.76514625834944 LTS-023 chr19 9226018 11727921 2501904 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, OR7D4, OR7G1, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, OR7D2, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, C3P1, OR7G3, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, NA NA NA NA NA NA NA NA NA LTS-023 ECSIT, PDE4A, PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.300318295037076 115 0.171260756397729 1.12860912193099 4846 0.418504482786262 5 3 2 -6.9013675523205 LTS-023 NA NA NA NA LTS-023 chr19 11727922 11728152 231 * ZNF627 NA 0 NA 0.925 1 NA NA NA NA NA LTS-023 chr19 11728153 12978556 1250404 * c(ZNF625-ZNF20, ZNF443, RNASEH2A, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, ZNF627, MAST1, SNORD41, ZNF763, ZNF844, HOOK2, TNPO2, JUNB, ZNF788, ZNF833P, MAN2B1, ASNA1, WDR83OS, ZNF44, BEST2, ZNF823, ZNF490, PRDX2, ZNF878, ZNF20, ZNF69, ZNF136, C19orf43, ZNF442, RTBDN, FBXW9, WDR83, ZNF799, ZNF625, ZNF700, ZNF439) 0.332027159025139 78 0.105083732054922 1.02733143039421 2599 0.335540750976261 4 2 2 -6.96896271175746 LTS-023 chr19 12978557 13068015 89459 * c(KLF1, DNASE2, FARSA, MAST1, SYCE2, GCDH, RAD23A, CALR, GADD45GIP1) 0 1 NA 1.0672958435966 364 0.225578120153554 4 4 0 -5.77264179940955 LTS-023 chr19 13068016 14706192 1638177 * c(LOC100507373, DDX39A, GIPC1, NACC1, MISP3, RLN3, DAND5, ADGRL1, LOC284454, C19orf53, DNAJB1, NANOS3, PALM3, CLEC17A, LYL1, MIR181C, NDUFB7, NFIX, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RFX1, C19orf67, ZSWIM4, MIR639, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.272716725972887 53 0.128204936743931 1.03223298381733 2159 0.349426713670189 4 3 1 -6.75939843595937 LTS-023 chr19 14706193 19790270 5084078 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, SUGP2, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, ILVBL, CYP4F8, COPE, PGLYRP2, CCDC124, NXNL1, CIB3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, NA NA NA NA NA NA NA NA NA LTS-023 GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, BABAM1, ADGRE2, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, BORCS8-MEF2B, RAB8A, MYO9B, NOTCH3, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ATP13A1, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, UPF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 RPL18A, RASAL3, MRPL34, SLC1A6, SLC5A5, UCA1, CYP4F12, BST2, TPM4, LOC729966, BORCS8, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, EPHX3, SLC35E1, PBX4, KIAA1683, ELL, PLVAP, USHBP1, TSSK6, C19orf44, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, AP1M1, F2RL3, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, MED26, HOMER3, GDF15) 0.255088294795009 316 0.146945642229168 1.07665732396921 9192 0.46314395840742 4 3 1 -6.86707172321641 LTS-023 NA NA NA NA LTS-023 chr19 19790271 19790274 4 * ZNF101 NA 0 NA 0.898 1 NA NA NA NA NA LTS-023 chr19 19790275 20369503 579229 * c(LINC00663, ZNF506, ZNF253, ZNF14, ZNF90, ZNF93, ZNF486, ZNF682, ZNF101) 0.230190590237308 7 0.160428592630283 0.906639694874737 309 0.39594341270329 4 3 1 -6.77365870086729 LTS-023 chr19 20369504 20727463 357960 * c(ZNF737, MIR1270, ZNF826P) 0.349 1 NA 1.05425412389868 31 0.252907714053876 4 4 0 -5.78379619450057 LTS-023 chr19 20727464 22499853 1772390 * c(ZNF737, ZNF729, ZNF257, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, ZNF493, ZNF429, LINC00664, LOC641367, ZNF708, ZNF43, ZNF85, ZNF208, ZNF430) 0.34358836449677 43 0.0751795856577288 0.887752010340421 648 0.334936344567195 3 2 1 -7.0042188315647 LTS-023 chr19 22499854 22783118 283265 * c(ZNF729, ZNF98, GOLGA2P9) 0 1 NA 0.976170617288908 33 0.309991021986317 4 4 0 -5.76441139999781 LTS-023 chr19 22783119 23922120 1139002 * c(ZNF730, ZNF681, ZNF675, ZNF728, GOLGA2P9, ZNF724, ZNF492, ZNF91, ZNF99) 0.264530337305543 10 0.14380758749879 0.951209283619565 287 0.309699249680712 4 3 1 -6.73813287689745 LTS-023 chr19 23922121 24116974 194854 * c(ZNF681, RPSAP58, ZNF726) 0.257743070220611 10 0.124720175682294 1.13187863273561 192 0.529975674240684 4 3 1 -6.74411458235556 LTS-023 chr19 24116975 24345121 228147 * c(HAVCR1P1, ZNF254) NA 0 NA 1.02056508517837 69 0.293925284536777 4 NA NA -5.76742462196774 LTS-023 chr19 28247625 29567148 1319524 * c(LINC01532, LINC00906, LINC00662) 0 1 NA 1.78743774661189 5 2.2987589477803 8 8 0 -5.76494156507439 LTS-023 chr19 29567149 31766263 2199115 * c(POP4, LOC284395, VSTM2B, TSHZ3, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.322240325107792 8 0.210214813600619 1.33056286736699 422 0.518558276165504 6 4 2 -6.76428708911541 LTS-023 chr19 31766264 33638539 1872276 * c(THEG5, SLC7A9, WDR88, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, GPATCH1, TSHZ3, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12) 0.374353245038766 44 0.132741709805919 1.69310321143646 1046 0.811978365920597 7 4 3 -6.7432641305334 LTS-023 chr19 33638540 33639616 1077 * WDR88 0 1 NA 1.81025378028008 5 0.605374842556246 8 8 0 -5.76441400553791 LTS-023 chr19 33639617 33878837 239221 * c(CEBPA, CEBPG, WDR88, LRP3, PEPD, SLC7A10, CEBPA-AS1) 0.251284307231198 9 0.223859889216447 1.82057924274619 225 0.48330174806485 8 6 2 -6.73464266448812 LTS-023 chr19 33878838 34262419 383582 * c(PEPD, CHST8) 0.455 1 NA 1.72131950079504 93 0.511488207164404 7 7 0 -5.76531121669099 LTS-023 chr19 34262420 35862499 1600080 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, MIR5196, WTIP, ZNF792, ZNF599, FAM187B, LGI4, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, PDCD2L, ZNF30, CD22, KIAA0355) 0.393643248918529 67 0.10019469513659 1.69411544732564 1777 0.615241802189881 7 4 3 -6.73399825947227 LTS-023 chr19 35862500 35863805 1306 * character(0) 0.495 1 NA 0.822421046389374 39 0.735164743258336 3 3 0 -5.76442355221373 LTS-023 chr19 35863806 35863809 4 * character(0) 0.487 1 NA 3.787 1 NA NA NA NA NA LTS-023 chr19 35863810 36038161 174352 * c(LINC01531, TMEM147-AS1, TMEM147, GAPDHS, FFAR2, SBSN, KRTDAP, DMKN) 0.399173108115276 17 0.109212555839249 1.70457389504351 309 0.529559194943321 7 4 3 -6.73628767110253 LTS-023 chr19 36038162 36048667 10506 * c(TMEM147, ATP4A) 0 1 NA 1.8347141686151 64 0.720569299117961 8 8 0 -5.76442372068182 LTS-023 chr19 36048668 37004576 955909 * c(LOC100134317, LINC00665, UPK1A-AS1, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF565, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, ZBTB32, WDR62, ZFP82, APLP1, ZNF260, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF566, ALKBH6, KMT2B) 0.261264551020843 54 0.201830321523386 1.73583114895476 2298 0.631392153216414 8 6 2 -6.74450680515014 LTS-023 chr19 37004577 37004728 152 * ZNF260 0.478 1 NA 2.32418885663496 3 0.669930593419945 10 10 0 -5.76441017479991 LTS-023 chr19 37004729 37644051 639323 * c(ZNF420, ZNF567, ZNF585A, ZNF345, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF529, ZNF382, ZNF461) 0.424573741570969 45 0.0998510911509754 1.62018946968077 860 0.431043346376029 7 4 3 -6.8003955123804 LTS-023 chr19 37644052 37675789 31738 * c(ZNF585A, ZNF585B) 0 1 NA 1.71840862961172 27 0.656943852297306 7 7 0 -5.76445068187675 LTS-023 chr19 37675790 37881207 205418 * c(ZNF383, LOC284412, HKR1, ZNF527, ZNF585B) 0.251897560165783 10 0.243631871660686 1.64786163676122 247 0.653256249058972 8 6 2 -6.73915517835182 LTS-023 chr19 37881208 38022358 141151 * c(ZNF569, ZNF570, ZNF793, ZNF527) 0.496 1 NA 1.77270541017658 177 0.367138928310589 7 7 0 -5.7667796472831 LTS-023 chr19 38022359 38702777 680419 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF781, ZNF540, ZFP30, SIPA1L3, ZNF793, ZNF571, LOC644554, DPF1, WDR87, ZNF607) 0.363530900338055 20 0.132279717584407 1.69758654507273 803 0.763931729072071 8 5 3 -6.74177698714965 LTS-023 chr19 38702778 38706883 4106 * DPF1 0 1 NA 1.74989429299113 13 1.25992953099645 7 7 0 -5.76441378002014 LTS-023 chr19 38706884 38755736 48853 * c(SPINT2, DPF1, PPP1R14A) 0 1 NA 1.51311218778734 68 0.521431275496443 6 6 0 -5.76469678655395 LTS-023 chr19 38755737 38774306 18570 * SPINT2 NA 0 NA 3.113 1 NA NA NA NA NA LTS-023 chr19 38774307 39034467 260161 * c(SPINT2, RASGRP4, FAM98C, GGN, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, YIF1B, KCNK6) 0.210045707473977 37 0.141113525315708 2.31442276048604 963 1.10047869517887 10 8 2 -6.73315303043872 LTS-023 chr19 39034468 39037063 2596 * RYR1 NA 0 NA 3.121 1 NA NA NA NA NA LTS-023 chr19 39037064 40336874 1299811 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, MAP4K1, FBXO17, CLC, EID2B, RINL, FBXO27, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, RYR1, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DYRK1B, TIMM50, GMFG) 0.193006997984868 63 0.105771948403745 2.74555538113463 2329 1.0053860467448 11 9 2 -6.73622587531858 LTS-023 chr19 40336875 40337017 143 * FBL NA 0 NA 2.38719951316275 5 0.250282840003065 10 NA NA -5.76441035220499 LTS-023 chr19 40337018 40354044 17027 * c(FBL, FCGBP) NA 0 NA 1.221 1 NA NA NA NA NA LTS-023 chr19 40354045 40368280 14236 * FCGBP 0.481 1 NA 1.28230530717006 67 0.260648262915085 5 5 0 -5.76487020687045 LTS-023 chr19 40368281 41332632 964352 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, C19orf54, SERTAD3, SERTAD1, ZNF546, MAP3K10, RAB4B, PSMC4, PRX, SPTBN4, BLVRB, SNRPA, MIR641, COQ8B, CNTD2, ITPKC, MIA, LTBP4, FCGBP, NUMBL, SHKBP1) 0.399599032003331 56 0.153688904026215 1.24784138246431 2173 0.382523761573475 5 3 2 -6.74628854359343 LTS-023 chr19 41332633 41349712 17080 * CYP2A6 NA 0 NA 0.781 1 NA NA NA NA NA LTS-023 chr19 41349713 41381609 31897 * c(CYP2A6, CYP2A7) 0.335 1 NA 0.704287294281363 39 0.244859195541082 3 3 0 -5.76551462696921 LTS-023 chr19 41381610 41381708 99 * CYP2A7 NA 0 NA 1.228 1 NA NA NA NA NA LTS-023 chr19 41381709 41447334 65626 * c(CYP2A7, CYP2B7P, CYP2G1P) 0.436625123887067 9 0.0667784479537456 1.23848159490333 149 0.438842765350973 6 3 3 -6.94454951680185 LTS-023 chr19 41447335 41532075 84741 * c(CYP2A7, CYP2B6, CYP2B7P) 0 1 NA 1.25983951922398 69 0.38243756155881 5 5 0 -5.76504750701389 LTS-023 chr19 41532076 41626441 94366 * c(CYP2A7, CYP2A13, CYP2F1) 0.419 1 NA 1.11610741741547 67 0.435704317080067 5 5 0 -5.76623884873327 LTS-023 chr19 41626442 41634211 7770 * CYP2F1 0 2 0 0.656239569031901 59 0.737977558385283 0 0 0 -Inf LTS-023 chr19 41634212 41699216 65005 * c(CYP2F1, CYP2S1) NA 0 NA 1.156 1 NA NA NA NA NA LTS-023 chr19 41699217 41763390 64174 * c(CYP2S1, AXL) 0.272703261591236 7 0.239241758578261 1.33676709127565 153 0.470872586105903 7 5 2 -6.74562660039239 LTS-023 chr19 41763391 41765617 2227 * AXL 0.426 1 NA 1.39316388092006 9 0.508018563746554 6 6 0 -5.76441511582909 LTS-023 chr19 41765618 41944199 178582 * c(HNRNPUL1, B3GNT8, ATP5SL, AXL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.397352590872024 14 0.166154981935475 1.23364833482967 370 0.383574915860061 5 3 2 -6.73926916766118 LTS-023 chr19 41944200 42260697 316498 * c(ERICH4, PCAT19, CEACAM5, CEACAM7, CEACAM4, CEACAM6, ATP5SL, CEACAM21) 0.336299273783322 13 0.120163883818554 0.962699169905023 265 0.626449403545867 3 2 1 -6.76472346679378 LTS-023 chr19 42260698 42470974 210277 * c(RABAC1, CEACAM3, LYPD4, CEACAM6, ATP1A3, RPS19, DMRTC2, ARHGEF1, CD79A) 0 1 NA 0.92661281829358 375 0.223438245505033 4 4 0 -5.77148638219454 LTS-023 chr19 42470975 43697391 1226417 * c(LOC100289650, MIR4323, LOC100505622, LIPE-AS1, CEACAM8, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, PSG8, ATP1A3, PAFAH1B3, POU2F2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG11, CEACAM1, ZNF574, PSG10P, CNFN) 0.175376229676224 35 0.188430322810905 0.982850801335989 1630 0.452504473685723 4 3 1 -6.86619456982481 LTS-023 chr19 43697392 43708023 10632 * c(PSG4, PSG6) NA 0 NA 2.203 1 NA NA NA NA NA LTS-023 chr19 43708024 44035946 327923 * c(ETHE1, PRG1, LYPD3, LOC284344, ZNF575, PSG4, PSG9, CD177, PHLDB3, TEX101) 0.102394913851929 7 0.0619508253528939 2.24658445626203 277 1.2197514035017 11 10 1 -6.73595979958007 LTS-023 chr19 44035947 44127689 91743 * c(SRRM5, IRGQ, ZNF428, CADM4, ZNF575, PINLYP, XRCC1, ZNF576) 0.186988614188187 6 0.0954835064291211 1.58071232454607 295 0.377518454684469 6 5 1 -6.7388299751417 LTS-023 chr19 44127690 44128207 518 * CADM4 NA 0 NA 0.8 1 NA NA NA NA NA LTS-023 chr19 44128208 44132028 3821 * CADM4 NA 0 NA 2.22281998936156 39 0.621657397911315 9 NA NA -5.76442160970326 LTS-023 chr19 44132029 44150492 18464 * c(CADM4, PLAUR) NA 0 NA 0.805 1 NA NA NA NA NA LTS-023 chr19 44150493 44150642 150 * PLAUR 0 1 NA 0.813424951022757 5 0.339161908238528 3 3 0 -5.76441578127834 LTS-023 chr19 44150643 44156472 5830 * PLAUR 0.308 1 NA 0.905019539756811 11 0.227387694557915 4 4 0 -5.7648062379381 LTS-023 chr19 44156473 45029208 872736 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, ZNF285, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, KCNN4, PLAUR, SMG9, IRGC, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.338452532953463 55 0.132247154087753 0.958395936654107 1349 0.319935179328846 4 2 2 -6.84917083802323 LTS-023 chr19 45029209 45121400 92192 * c(CEACAM20, IGSF23, CEACAM22P) 0 1 NA 1.05537993285113 23 0.495193921371058 4 4 0 -5.76575327537664 LTS-023 chr19 45121401 45187655 66255 * c(MIR4531, IGSF23, CEACAM19, PVR) 0.0920910640019315 10 0.152852725051127 0.987329354622858 194 0.961011568666218 10 9 1 -6.77441528427393 LTS-023 chr19 45187656 45206695 19040 * CEACAM16 0.338 1 NA 0.997750571000959 22 0.385726637608863 4 4 0 -5.76444405836276 LTS-023 chr19 45206696 48059076 2852381 * c(SNAR-E, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, RNU6-66P, TOMM40, PPP1R13L, CD3EAP, CLASRP, KPTN, CKM, AP2S1, CLPTM1, PPM1N, KLC3, DACT3, SIX5, IGFL2, ZNF296, DMPK, DMWD, ERCC1, ERCC2, ZC3H4, FBXO46, FOSB, CBLC, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, GPR4, PPP1R37, NKPD1, ARHGAP35, STRN4, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, NA NA NA NA NA NA NA NA NA LTS-023 APOC2, APOE, IGFL1, CEACAM16, BLOC1S3, BHMG1, IGFL3, BCAM, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, PPP5C, MEIS3, PTGIR, PNMAL2, MARK4, NECTIN2, RELB, BCL3, RTN2, HIF3A, SLC1A5, SLC8A2, SNRPD2, MIR642A, C5AR1, CCDC61, VASP, MIR769, TRAPPC6A, FKRP, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, ZNF541, NAPA, PGLYRP1, EXOC3L2, LOC93429, GNG8, DHX34) 0.28800873804172 142 0.170073187398898 0.956989308297127 4819 0.35005256198592 4 3 1 -6.74987255756353 LTS-023 NA NA NA NA LTS-023 chr19 48059077 48176768 117692 * c(GLTSCR1, ZNF541) NA 0 NA 1.228 1 NA NA NA NA NA LTS-023 chr19 48176769 48815019 638251 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CARD8-AS1, CRX, ZNF114, CARD8, TPRX1, GLTSCR2, GLTSCR1, EHD2, LIG1, CABP5, ELSPBP1, SELENOW, SULT2A1, SNORD23, PLA2G4C, CCDC114) 0.271175927904548 61 0.108851663742239 1.15564480234651 1131 0.966658349300812 4 3 1 -6.74643543771342 LTS-023 chr19 48815020 48815264 245 * CCDC114 NA 0 NA 1.388 1 NA NA NA NA NA LTS-023 chr19 48815265 48823545 8281 * CCDC114 0.278284503903467 2 0.0466690475583121 1.38011159197437 18 0.138975053011241 7 5 2 -6.79799911275352 LTS-023 chr19 48823546 48869246 45701 * c(EMP3, SYNGR4, TMEM143, CCDC114) 0 1 NA 1.3183085893551 69 0.385487921133923 6 6 0 -5.76578256348621 LTS-023 chr19 48869247 49637403 768157 * c(SNAR-G1, SNAR-G2, LOC101059948, CGB3, RUVBL2, KDELR1, CGB1, CGB2, LMTK3, NTN5, DBP, SPACA4, SYNGR4, PPP1R15A, FTL, FUT1, FUT2, FGF21, DHDH, MAMSTR, IZUMO1, GRIN2D, GYS1, KCNA7, KCNJ14, LHB, NTF4, NUCB1, HSD17B14, FAM83E, RASIP1, C19orf73, SPHK2, PLEKHA4, BAX, BCAT2, RPL18, LIN7B, SEC1P, SNRNP70, SULT2B1, TULP2, CA11, GRWD1, PPFIA3, CYTH2, CGB5, CGB7, CGB8) 0.20967959672193 58 0.117947254096657 1.34958485849166 1975 0.413420690251384 5 4 1 -6.76780282346124 LTS-023 chr19 49637404 49637482 79 * PPFIA3 NA 0 NA 1.308 1 NA NA NA NA NA LTS-023 chr19 49637483 49814565 177083 * c(MIR4324, SLC6A16, HRC, TRPM4, PPFIA3) 0.155042644246152 11 0.126493549961325 1.5939636730936 356 0.812959270409164 7 6 1 -6.73340809346077 LTS-023 chr19 49814566 49952958 138393 * c(GFY, PTH2, CCDC155, DKKL1, SLC6A16, PIH1D1, SLC17A7, TEAD2, CD37) 0.221281551172725 11 0.182185120637823 1.06867168721013 389 1.54652503658589 5 4 1 -6.73419438285923 LTS-023 chr19 49952959 49954803 1845 * PIH1D1 0.425 1 NA 0.874482232644311 7 0.41078449917433 4 4 0 -5.76449070204598 LTS-023 chr19 49954804 50763889 809086 * c(SNAR-B2, SNAR-D, PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, PNKP, SIGLEC11, IZUMO2, CPT1C, ALDH16A1, AP2A1, ADM5, FCGRT, ATF5, FLT3LG, RPL13A, NUP62, ZNF473, IL4I1, SNORD35A, SNORD34, SNORD33, SNORD32A, PRMT1, IRF3, SIGLEC16, LOC400710, MIR150, NOSIP, VRK3, PTOV1, PIH1D1, PRRG2, RCN3, PRR12, SCAF1, TSKS, RPS11, RRAS, TBC1D17, MYH14, FUZ, MED25, BCL2L12, AKT1S1, SNORD35B) 0.32023918025528 94 0.110474833079731 1.06225993521024 2137 0.420299408658604 4 3 1 -6.89808493968169 LTS-023 chr19 50763890 50774700 10811 * MYH14 0 1 NA 1.09250381461284 29 0.454738773601668 5 5 0 -5.76472183770958 LTS-023 chr19 50774701 50824091 49391 * c(KCNC3, MYH14) 0.0464274503154388 9 0.113666666666667 1.14395228901742 131 0.687929953401396 3 3 0 -6.74691521223397 LTS-023 chr19 50824092 50865535 41444 * c(NAPSB, KCNC3, NR1H2, NAPSA) 0.347 1 NA 1.09108635847774 93 0.282149567098939 5 5 0 -5.76759405724217 LTS-023 chr19 50865536 52133720 1268185 * c(SNAR-F, LOC100129083, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, SYT3, C19orf48, SIGLEC5, NA NA NA NA NA NA NA NA NA LTS-023 SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.206938332475825 95 0.171823757982972 1.0976616014141 2481 0.635546109166069 5 4 1 -6.7513916506201 LTS-023 NA NA NA NA LTS-023 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.732 1 NA NA NA NA NA LTS-023 chr19 52146303 52196824 50522 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.298 1 NA 1.68509633072995 39 0.77409703524365 7 7 0 -5.76441596820906 LTS-023 chr19 52196825 52196923 99 * SPACA6 NA 0 NA 1.136 1 NA NA NA NA NA LTS-023 chr19 52196924 52272186 75263 * c(SPACA6, FPR1, FPR2, HAS1) 0.154603365228662 7 0.188225422097573 1.13762023089761 103 1.22960786730126 7 6 1 -6.737434250333 LTS-023 chr19 52272187 52374702 102516 * c(FPR2, FPR3, ZNF577) 0.301 1 NA 1.14631739069756 47 0.311280520499088 5 5 0 -5.76610039747821 LTS-023 chr19 52374703 54081881 1707179 * c(ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF813, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, ZNF615, ZNF841, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, ZNF350, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NA NA NA NA NA NA NA NA NA LTS-023 ZNF845, ZNF432) 0.32887777500236 119 0.0963713825994694 1.03977330768424 2475 0.571508826394319 5 3 2 -6.97179562297504 LTS-023 NA NA NA NA LTS-023 chr19 54081882 54082342 461 * ZNF331 0 1 NA 1.14293026566483 5 0.234896360125056 5 5 0 -5.76442502913678 LTS-023 chr19 54082343 54444920 362578 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, LOC284379, MIR372, MIR373, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, NA NA NA NA NA NA NA NA NA LTS-023 MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG7, NLRP12, MYADM) 0.13325581668934 24 0.168229263640211 1.02258519415348 540 0.58623861957273 6 5 1 -6.85354065617105 LTS-023 NA NA NA NA LTS-023 chr19 54444921 54445974 1054 * CACNG7 0.368 1 NA 0.938530499686035 17 0.289439874890228 4 4 0 -5.76442230265666 LTS-023 chr19 54445975 54723304 277330 * c(MIR935, LILRB3, OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.29074888054702 24 0.150418739196449 1.03740881127135 942 0.343655037411019 4 3 1 -6.75549639579275 LTS-023 chr19 54723305 54744435 21131 * c(LILRB3, LILRA6) 0.322858061344793 5 0.124625438815677 0.703431787748405 74 0.481864556446081 3 2 1 -6.74510800269262 LTS-023 chr19 54744436 54745437 1002 * c(LILRB3, LILRA6) NA 0 NA 1.03 1 NA NA NA NA NA LTS-023 chr19 54745438 55333209 587772 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.267645528597503 56 0.139832895401489 1.02601824113857 1246 0.616782001675219 4 3 1 -6.7354501472015 LTS-023 chr19 55333210 55333223 14 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.081 1 NA NA NA NA NA LTS-023 chr19 55333224 55358658 25435 * c(KIR2DS4, KIR3DL1) 0.305396391002064 7 0.0577045017638098 1.7742574533761 39 0.846896060075969 10 7 3 -6.73525565764367 LTS-023 chr19 55358659 55358705 47 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.73 1 NA NA NA NA NA LTS-023 chr19 55358706 55488150 129445 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NLRP2, NCR1) 0.273309562473621 26 0.143339881186157 1.05547147752343 250 0.939518675162937 4 3 1 -6.73552379228631 LTS-023 chr19 55488151 55492981 4831 * NLRP2 0 1 NA 1.13523233559263 13 1.6240450251116 5 5 0 -5.76441426690047 LTS-023 chr19 55492982 56896125 1403144 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF579, NLRP11, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, ZNF444, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZSCAN5A, ISOC2, BRSK1, KMT5C, NA NA NA NA NA NA NA NA NA LTS-023 FIZ1, GALP, ZNF628) 0.217489626818159 128 0.141345558575902 1.17341311964169 3051 0.712964909266172 5 4 1 -6.73449691238777 LTS-023 NA NA NA NA LTS-023 chr19 56896126 56901457 5332 * ZNF582 0.261 1 NA 1.13845571001961 15 0.221127909547738 5 5 0 -5.76463391615991 LTS-023 chr19 56901458 59073613 2172156 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, NA NA NA NA NA NA NA NA NA LTS-023 ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, ZNF551, UBE2M, ZNF835, ZNF264) 0.266175886940935 123 0.128385800491434 1.14177532998192 4061 0.675285659975836 4 3 1 -6.80170605060466 LTS-023 NA NA NA NA LTS-023 chr19 59073614 59084001 10388 * c(MZF1-AS1, MZF1) NA 0 NA 1.10134884012652 57 0.163488002824884 5 NA NA -5.76636707772596 LTS-023 chr20 68260 68264 5 * character(0) 0.262 1 NA 3.384 1 NA NA NA NA NA LTS-023 chr20 68265 1559302 1491038 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.229072985644722 56 0.0974467270378519 0.944493443111566 1952 0.337786076274953 4 3 1 -6.82288938011037 LTS-023 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.012 1 NA NA NA NA NA LTS-023 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0384174088364882 39 0.0335221440700014 0 NA NA -7.24193563346234 LTS-023 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-023 chr20 1600391 6021709 4421319 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, PRNP, GPCPD1, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, NA NA NA NA NA NA NA NA NA LTS-023 GFRA4, LOC643406, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.233005604383995 186 0.109014576343142 0.890262155716189 5111 0.344257058448624 4 3 1 -6.97205972667984 LTS-023 NA NA NA NA LTS-023 chr20 6021710 6064731 43022 * c(LRRN4, FERMT1) 0.178423866928016 7 0.030503707815218 1.42514679717151 113 0.355336549441727 6 5 1 -6.73759056596455 LTS-023 chr20 6064732 6093177 28446 * FERMT1 0.162 1 NA 1.48171308713696 47 0.372774276774306 6 6 0 -5.76452511171148 LTS-023 chr20 6093178 8782899 2689722 * c(PLCB1, HAO1, FERMT1, TMX4, BMP2) 0.150079091801796 13 0.0260620561205514 1.54966715452021 451 0.440253785037911 7 6 1 -6.8106027568857 LTS-023 chr20 8782900 8782998 99 * PLCB1 NA 0 NA 1.811 1 NA NA NA NA NA LTS-023 chr20 8782999 9318772 535774 * c(PLCB1, PLCB4) 0.126205266430331 4 0.0368906040431255 2.04718101704435 91 0.519696579317523 9 8 1 -6.74028396441399 LTS-023 chr20 9318773 9319548 776 * PLCB4 NA 0 NA 1.205 1 NA NA NA NA NA LTS-023 chr20 9319549 17417483 8097935 * c(SNAP25-AS1, MACROD2-AS1, ISM1-AS1, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, FLRT3, LAMP5, LOC339593, PCSK2, ESF1, PLCB4, SPTLC3, KIF16B, TASP1, OTOR, PAK5, ANKEF1, SNAP25, SNRPB2, NDUFAF5, SEL1L2, MKKS) 0.165961186193046 55 0.0983262897665688 1.28289278148731 2195 1.0032506837751 6 5 1 -6.80871674611968 LTS-023 chr20 17417484 17434440 16957 * PCSK2 NA 0 NA 1.96 1 NA NA NA NA NA LTS-023 chr20 17434441 17716569 282129 * c(DSTN, BANF2, PCSK2, RRBP1, BFSP1) 0.0722032963892631 15 0.0479470938590006 2.1222510642221 392 1.03768115142731 15 14 1 -6.77414645822494 LTS-023 chr20 17716570 17922211 205642 * character(0) NA 0 NA 0.853 1 NA NA NA NA NA LTS-023 chr20 17922212 18143447 221236 * c(PET117, SNX5, KAT14, OVOL2, SNORD17, MGME1) 0.0627645691972349 2 0.136471608769004 1.06976355432052 222 0.318195547846152 4 4 0 -6.77805829001553 LTS-023 chr20 18143448 25594020 7450573 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, MIR3192, CST8, SEC23B, POLR3F, RBBP9, CSTL1, CST9L, CST9, LINC00261, NANP, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, NINL, CFAP61, ABHD12, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, DZANK1, KIZ, APMAP, RALGAPA2, KAT14, SLC24A3, PYGB, NA NA NA NA NA NA NA NA NA LTS-023 NAPB, GZF1, NKX2-4, SSTR4, THBD, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, DTD1, ENTPD6, GINS1) 0.124844244873884 128 0.0825633134381477 1.27391640384902 3893 0.526121478678584 6 5 1 -7.22503031950839 LTS-023 NA NA NA NA LTS-023 chr20 25594021 25595477 1457 * NANP 0.273 1 NA 1.11137137044625 31 0.238900798236108 5 5 0 -5.76451448557245 LTS-023 chr20 25595478 25755085 159608 * c(NANP, ZNF337, FAM182B) 0.192977865119196 7 0.0751902349282899 1.15298510516564 151 0.409115854314711 6 5 1 -6.77564188033957 LTS-023 chr20 25755086 25755322 237 * FAM182B NA 0 NA 0.599 1 NA NA NA NA NA LTS-023 chr20 25755323 26189009 433687 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.266725652795429 22 0.127721423045478 0.92659880709845 75 0.751099683407212 4 3 1 -6.7344208037347 LTS-023 chr20 26189010 26189020 11 * MIR663AHG NA 0 NA 0.562 1 NA NA NA NA NA LTS-023 chr20 29625845 29625876 32 * FRG1BP 0.223 1 NA 1.162 1 NA NA NA NA NA LTS-023 chr20 29625877 29632662 6786 * FRG1BP 0.310606885442685 9 0.138474726936001 0.995193309292857 28 0.560546582274365 10 7 3 -6.744133595439 LTS-023 chr20 29632663 29632707 45 * FRG1BP 0.226 1 NA 0.900736636267288 3 0.39476870865525 4 4 0 -5.7644112535279 LTS-023 chr20 29632708 29976830 344123 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, FRG1BP) 0.211402429342974 9 0.116765196488984 1.19350283284061 93 0.620752395080462 5 4 1 -6.73376084023896 LTS-023 chr20 29976831 29978220 1390 * DEFB119 0 1 NA 1.74071769567674 7 1.57988468536397 7 7 0 -5.76441075815711 LTS-023 chr20 29978221 30795700 817480 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, TSPY26P, CCM2L, LINC00028, TTLL9, TPX2, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, TM9SF4) 0.126922788519416 30 0.120453377254247 1.29032120295379 1230 0.554290724343118 6 5 1 -6.87039760075483 LTS-023 chr20 30795701 30816111 20411 * POFUT1 0.246 1 NA 1.29779942104469 39 0.185903933806115 5 5 0 -5.76627240675537 LTS-023 chr20 30816112 31384880 568769 * c(NOL4L, LOC149950, COMMD7, ASXL1, DNMT3B, POFUT1, C20orf203, KIF3B) 0.20250568955161 18 0.077075211548812 1.27331559457543 834 0.410087706430016 5 4 1 -6.75527121184555 LTS-023 chr20 31384881 31386438 1558 * DNMT3B 0 1 NA 1.20756936735581 11 0.396173217395899 5 5 0 -5.76441013583839 LTS-023 chr20 31386439 31622839 236401 * c(BPIFB6, SUN5, DNMT3B, MAPRE1, BPIFB2) 0.110423920591329 17 0.119328575050276 1.35372883588972 461 0.883676565729234 9 8 1 -6.77621210849467 LTS-023 chr20 31622840 31624381 1542 * BPIFB6 0 1 NA 1.41318369250661 11 2.45930481307958 6 6 0 -5.76441017757726 LTS-023 chr20 31624382 31893776 269395 * c(BPIFB6, BPIFA3, BPIFA2, BPIFB4, BPIFA4P, BPIFB3, BPIFA1, BPIFB1) 0.042441324896615 11 0.104694794521982 1.3349653750245 397 0.839387840117086 5 5 0 -6.75292328164373 LTS-023 chr20 31893777 32031681 137905 * c(CDK5RAP1, SNTA1, BPIFB1) 0.222 1 NA 1.32869358417249 148 0.339924551723069 6 6 0 -5.76880900779017 LTS-023 chr20 32031682 33037336 1005655 * c(MIR4755, PXMP4, C20orf144, CHMP4B, ACTL10, E2F1, AHCY, RALY, ASIP, NECAB3, SNTA1, ITCH, ZNF341, EIF2S2, CBFA2T2) 0.170010320806983 11 0.0973512851855214 1.22840014959436 810 0.310456136766948 5 4 1 -6.86199608824802 LTS-023 chr20 33037337 33057954 20618 * c(MIR644A, ITCH) 0.244 1 NA 1.05963270400168 19 0.356384517027056 4 4 0 -5.76505214915409 LTS-023 chr20 33057955 33438697 380743 * c(PIGU, HMGB3P1, NCOA6, GGT7, TP53INP2, DYNLRB1, ITCH, MAP1LC3A) 0.0957515412014982 9 0.132614206545821 1.22992360584356 617 0.413910268882515 5 5 0 -6.90188383767032 LTS-023 chr20 33438698 33447314 8617 * GGT7 0.262 1 NA 1.22296769236863 35 0.339927755547553 5 5 0 -5.76441783271599 LTS-023 chr20 33447315 33581038 133724 * c(MIR499B, GGT7, GSS, ACSS2, MIR499A, MYH7B) 0.192009921825297 10 0.121091517273323 1.20327823023847 340 0.40769618003185 6 5 1 -6.75309264778314 LTS-023 chr20 33581039 33588168 7130 * MYH7B 0 1 NA 1.28450899722839 77 0.520734199269117 5 5 0 -5.76447118851559 LTS-023 chr20 33588169 33880247 292079 * c(MMP24-AS1, PROCR, MMP24, FAM83C, TRPC4AP, EIF6, EDEM2, MYH7B) 0.142743766723263 7 0.128445838131616 1.23360322450684 483 0.409666496443499 6 5 1 -6.81024581034792 LTS-023 chr20 33880248 33890361 10114 * character(0) NA 0 NA 0.837 1 NA NA NA NA NA LTS-023 chr20 33890362 33934615 44254 * c(UQCC1, GDF5) 0 2 0 1.1323745635964 94 0.6567137713381 0 0 0 -Inf LTS-023 chr20 33934616 33971876 37261 * c(UQCC1, GDF5) 0.267 1 NA 1.02725994960812 27 0.348877397872718 4 4 0 -5.76487235879896 LTS-023 chr20 33971877 34022672 50796 * c(UQCC1, GDF5) 0.209947184557833 9 0.0978940754080654 1.07643044360967 85 0.374472047402359 5 4 1 -6.73766119140681 LTS-023 chr20 34022673 34023118 446 * GDF5 0 1 NA 1.32206370573411 8 0.178960490452103 6 6 0 -5.76446813214597 LTS-023 chr20 34023119 34146597 123479 * c(CEP250, C20orf173, ERGIC3, GDF5) 0.0578017425831277 12 0.121431206363059 1.1368159207144 382 0.492689025479849 4 4 0 -6.77117933532464 LTS-023 chr20 34146598 34147998 1401 * character(0) 0.229 1 NA 1.18904664957602 25 0.272249132230022 5 5 0 -5.76441268837405 LTS-023 chr20 34147999 34794716 646718 * c(RBM12, ROMO1, CNBD2, EPB41L1, PHF20, SCAND1, NORAD, SPAG4, CPNE1, NFS1, RBM39) 0.207062520087192 28 0.0843332627517115 1.14908590491486 1031 0.435408548390548 5 4 1 -6.74367669228202 LTS-023 chr20 34794717 34810300 15584 * EPB41L1 0 1 NA 1.15987266491169 69 0.324366591757308 5 5 0 -5.76455127034542 LTS-023 chr20 34810301 35125388 315088 * c(EPB41L1, DLGAP4, AAR2) 0 3 0 1.2631808907375 209 0.635086275905258 0 0 0 -Inf LTS-023 chr20 35125389 35867276 741888 * c(TGIF2-C20orf24, MYL9, MROH8, SOGA1, TLDC2, DLGAP4, SAMHD1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, DSN1, SLA2) 0.0325925062445726 16 0.0285335329042865 0.902141306112392 1315 0.30132149671396 4 4 0 -6.76874185744684 LTS-023 chr20 35867277 35869604 2328 * RPN2 NA 0 NA 0.962 1 NA NA NA NA NA LTS-023 chr20 35869605 37191259 1321655 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, SNHG11, SNORA71B, SNORA71A, GHRH, SNHG17, LBP, NNAT, CTNNBL1, RALGAPB, RPRD1B, RPN2, MANBAL, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, KIAA1755, TTI1) 0.0295606205997909 36 0.0195484542481513 1.00757018855746 1283 0.355226071638108 4 4 0 -6.73938279621236 LTS-023 chr20 37191260 43264967 6073708 * c(ADA, MIR3646, OSER1-AS1, SGK2, SERINC3, PTPRT, PKIG, FITM2, SLC32A1, R3HDML, ADIG, GTSF1L, ZHX3, L3MBTL1, PPP1R16B, HNF4A, LOC339568, ARHGAP40, MYBL2, IFT52, OSER1, PLCG1, RALGAPB, JPH2, DHX35, SRSF6, LPIN3, TOP1, GDAP1L1, TTPAL, ACTR5, FAM83D, CHD6, TOX2, EMILIN3, MAFB) 0.0272433466845697 79 0.0284014664697202 0.732445233260148 3640 0.317392323940978 3 3 0 -6.84875455786869 LTS-023 chr20 43264968 43343735 78768 * c(ADA, LINC01260) 0.429 1 NA 0.614223082994924 13 0.262269068139123 2 2 0 -5.78477408714448 LTS-023 chr20 43343736 44182002 838267 * c(STK4-AS1, EPPIN-WFDC6, WFDC2, SPINT3, TOMM34, RBPJL, WFDC12, RIMS4, WFDC6, WFDC5, TP53TG5, KCNS1, PIGT, PI3, DBNDD2, EPPIN, KCNK15, SDC4, SEMG1, SEMG2, SLPI, STK4, YWHAB, SYS1-DBNDD2, LINC01260, PABPC1L, MATN4, WISP2, SYS1, WFDC8) 0.04244380168262 49 0.0337946731301368 0.738154235570599 1467 0.400558045928804 3 3 0 -6.73953961591309 LTS-023 chr20 44182003 44184365 2363 * WFDC8 NA 0 NA 1.037 1 NA NA NA NA NA LTS-023 chr20 44184366 44352620 168255 * c(WFDC10A, WFDC13, WFDC11, WFDC9, WFDC10B, SPINT4, WFDC8) 0.0385662611841576 3 0.0204287379280594 1.0165155083675 125 0.306849909302104 3 3 0 -6.83345806765167 LTS-023 chr20 44352621 44354372 1752 * SPINT4 0.021 1 NA 0.752229971027963 9 0.264958487314523 3 3 0 -5.76441087348309 LTS-023 chr20 44354373 45364759 1010387 * c(ACOT8, ZNF663P, UBE2C, TP53RK, DNTTIP1, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, MMP9, SLC35C2, PLTP, CTSA, ZNF334, SLC12A5, NCOA5, ELMO2, ZNF335, PCIF1, CDH22, SLC13A3, TNNC2, MKRN7P, SLC2A10, SNX21, ZSWIM1, CD40) 0.0200116684928402 43 0.0215907264453639 0.989660111090541 2058 0.460465631136946 4 4 0 -6.86073541511554 LTS-023 chr20 45364760 48249713 2884954 * c(SNORD12B, LOC100131496, MIR3616, ARFGEF2, CSE1L, EYA2, ZMYND8, SNORD12C, LINC00494, KCNB1, ZFAS1, DDX27, SULF2, ZNFX1, PTGIS, PREX1, STAU1, SNORD12, SLC2A10, NCOA3, B4GALT5) 0.0160391916853972 48 0.0134298644395708 1.79512760584436 1981 0.583688678814859 8 8 0 -6.74856171398649 LTS-023 chr20 48249714 48249743 30 * B4GALT5 NA 0 NA 1.655 1 NA NA NA NA NA LTS-023 chr20 48249744 52602084 4352341 * c(MIR3194, ATP9A, TRERNA1, CEBPB, TSHZ2, FAM65C, SLC9A8, ADNP, MOCS3, LINC01270, KCNG1, TMEM189, TMEM189-UBE2V1, SUMO1P1, NFATC2, BCAS4, ZFP64, RNF114, SALL4, PTPN1, SNAI1, MIR645, UBE2V1, ZNF217, PARD6B, BCAS1, DPM1, B4GALT5, SPATA2) 0.0180806582703716 63 0.0283058509527038 1.65712873086465 2470 0.647632627028571 7 7 0 -6.73326047347628 LTS-023 chr20 52602085 52609028 6944 * BCAS1 NA 0 NA 1.267 1 NA NA NA NA NA LTS-023 chr20 52609029 60963522 8354494 * c(MIR298, CDH4, MIR1257, MIR4325, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, SYCP2, ADRM1, HRH3, FAM210B, PHACTR3, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, SPO11, SS18L1, MTG2, GNAS, C20orf197, MIR646HG, FAM209B, LAMA5, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, NA NA NA NA NA NA NA NA NA LTS-023 RBM38, DOK5, PSMA7, PMEPA1, CASS4, RAB22A, CDH26, RPS21, FAM217B, BMP7, AURKA, TAF4, TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, BCAS1, STX16, VAPB, OSBPL2) 0.0222137804862115 200 0.0190676124415488 1.44856807925622 5257 0.588218964120089 6 6 0 -6.73762177166507 LTS-023 NA NA NA NA LTS-023 chr20 60963523 60963636 114 * RPS21 NA 0 NA 2.57 1 NA NA NA NA NA LTS-023 chr20 60963637 61150894 187258 * c(MIR1-1HG, GATA5, RBBP8NL, C20orf166-AS1, CABLES2) 0.014460776292464 13 0.012121182983648 2.21684650992057 272 1.03252603760297 9 9 0 -6.73333129313168 LTS-023 chr20 61150895 61151460 566 * MIR1-1HG NA 0 NA 1.478 1 NA NA NA NA NA LTS-023 chr20 61151461 61711563 560103 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, BHLHE23, MIR1-1HG, COL9A3, SLCO4A1, MIR1-1, MIR133A2, NTSR1, GID8, MRGBP, SLC17A9, LOC63930) 0.0169972508698783 47 0.0121009858085743 1.68623441784759 1097 0.743633057568605 7 7 0 -6.73710709903145 LTS-023 chr20 61711564 61809777 98214 * c(LOC63930, HAR1A, HAR1B) NA 0 NA 1.389 1 NA NA NA NA NA LTS-023 chr20 61809778 62958898 1149121 * c(UCKL1-AS1, MIR941-1, MIR941-3, FLJ16779, MIR1914, MIR4326, MIR3196, RTEL1-TNFRSF6B, ARFRP1, RGS19, CHRNA4, NKAIN4, ZBTB46, SAMD10, ABHD16B, LINC00266-1, EEF1A2, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, KCNQ2, MIR124-3, MYT1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, PCMTD2, ARFGAP1, SLC2A4RG, ZNF512B, PTK6, COL20A1, SRMS, TCEA2, MIR647, TPD52L2, FNDC11, PPDPF, BIRC7, DNAJC5, ZGPAT, HELZ2, TNFRSF6B NA NA NA NA NA NA NA NA NA LTS-023 ) 0.0177582655394441 111 0.0151412730329437 1.39418555447631 3118 0.589330144475524 6 6 0 -6.75774877133631 LTS-023 NA NA NA NA LTS-023 chr20 62958899 62959313 415 * character(0) NA 0 NA 0.993688227188639 7 0.266979221592065 4 NA NA -5.76441113473958 LTS-023 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.33 1 NA 0.338825277708484 22 0.246554424855009 1 1 0 -5.78659412142227 LTS-023 chr21 9907272 10793871 886600 * TEKT4P2 0.32454666774216 9 0.0357145317451843 0.735705957830536 32 0.784033681360734 3 2 1 -6.84936680931867 LTS-023 chr21 10793872 10793885 14 * character(0) NA 0 NA 0.039 1 NA NA NA NA NA LTS-023 chr21 10793886 10942968 149083 * TPTE 0.147778015840531 9 0.120397374463805 0.210464202742066 64 0.193341417626543 1 1 0 -7.04652816791205 LTS-023 chr21 10942969 10942981 13 * TPTE 0 1 NA 1.169 1 NA NA NA NA NA LTS-023 chr21 10942982 11039084 96103 * c(TPTE, BAGE3) 0.202127169356549 10 0.184238975246824 0.440689805828863 56 0.41151978972786 1 1 0 -6.97329128631184 LTS-023 chr21 11039085 11098763 59679 * c(BAGE, TPTE, BAGE3) 0.361662005333416 8 0.13227433613517 0.380230058069434 38 0.256070525047317 2 1 1 -6.82594517813326 LTS-023 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 0.236 1 NA NA NA NA NA LTS-023 chr21 14745307 14756973 11667 * character(0) 0.127 1 NA 0.267738761396112 15 0.267304178436335 1 1 0 -5.76487795384243 LTS-023 chr21 14756974 17911552 3154579 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, USP25, POTED, LOC388813, MIR99AHG, ANKRD20A11P, MIR99A, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.105595927753759 12 0.0397936914445981 0.329298119560193 784 0.112658266591525 1 1 0 -8.7390539399373 LTS-023 chr21 17911553 17912094 542 * MIR99AHG NA 0 NA 0.517 1 NA NA NA NA NA LTS-023 chr21 17912095 31964916 14052822 * c(KRTAP25-1, KRTAP22-2, GRIK1-AS2, MIR4327, LINC01549, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, KRTAP13-1, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, LOC339622, NA NA NA NA NA NA NA NA NA LTS-023 APP, LINC00317, LINC00320, MIR99AHG, KRTAP26-1, MIRLET7C, MIR125B2, MIR155, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, KRTAP24-1, KRTAP27-1, CLDN8, ADAMTS1) 0.0631481897908761 83 0.0490301561807049 0.438461133492557 2977 0.185912925368165 2 2 0 -10.2389220620722 LTS-023 NA NA NA NA LTS-023 chr21 31964917 32015453 50537 * c(KRTAP20-4, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP20-1, KRTAP20-2, KRTAP22-1, KRTAP20-3) NA 0 NA 0.438367364684926 75 0.0716195579508913 2 NA NA -5.92089978824848 LTS-023 chr21 32015454 32090777 75324 * KRTAP20-3 NA 0 NA 0.637 1 NA NA NA NA NA LTS-023 chr21 32090778 32185088 94311 * c(KRTAP21-3, KRTAP8-1, KRTAP21-1, KRTAP21-2) 0.474 1 NA 0.767185585510892 29 0.12829364216784 3 3 0 -5.76686240023289 LTS-023 chr21 32185089 37507745 5322657 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, OLIG2, LINC00310, OLIG1, TCP10L, RCAN1, GART, DONSON, HUNK, KRTAP8-1, KRTAP11-1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, SETD4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, ITSN1, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, KRTAP19-8, LINC01548, TMEM50B, NA NA NA NA NA NA NA NA NA LTS-023 MIR802, RUNX1-IT1, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, PAXBP1, URB1, CRYZL1, KCNE2) 0.395037734059913 93 0.152101409295501 0.760264190801675 4356 0.750478450116012 3 2 1 -6.81120101877739 LTS-023 NA NA NA NA LTS-023 chr21 37507746 37572614 64869 * c(CBR3-AS1, CBR3, DOPEY2) 0 1 NA 0.86616199085984 33 0.262793504745387 4 4 0 -5.77257024371217 LTS-023 chr21 37572615 38103272 530658 * c(MORC3, CLDN14, SIM2, CHAF1B, DOPEY2) 0.267377768951108 16 0.229547634853132 0.795624009084856 533 0.352108276740265 3 2 1 -6.80337352407111 LTS-023 chr21 38103273 38118250 14978 * SIM2 0.47 1 NA 0.819460057676633 35 0.211534628748259 3 3 0 -5.76613276191579 LTS-023 chr21 38118251 38639485 521235 * c(DSCR3, DSCR9, HLCS, PIGP, RIPPLY3, SIM2, TTC3) 0.431364479105963 23 0.13818382955682 0.753127631730914 791 0.225553310965083 3 2 1 -6.98272602321756 LTS-023 chr21 38639486 38639514 29 * DSCR3 0.444 1 NA 0.146 1 NA NA NA NA NA LTS-023 chr21 38639515 38792747 153233 * c(DSCR3, DYRK1A) 0.103746113574399 2 0.000707106781186548 0.474990484752738 41 0.22239770462932 1 1 0 -12.5373177036564 LTS-023 chr21 38792748 38836483 43736 * DYRK1A NA 0 NA 0.933 1 NA NA NA NA NA LTS-023 chr21 38836484 43413731 4577248 * c(MIR3197, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, DSCR4, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, LINC00479, DSCAM, DYRK1A, PLAC4, ERG, ETS2, NA, BACE2, DSCR10, C2CD2, LINC00323, HMGN1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, ZBTB21, PCP4, BRWD1, LINC00112, LINC00111, FAM3B, RIPK4, PRDM15, SH3BGR, TMPRSS2, WRB, DSCR8, PSMG1) 0.407811354702037 78 0.142658760023778 0.787345436486856 2882 0.246608334174137 3 2 1 -6.98669508755102 LTS-023 chr21 43413732 43496364 82633 * c(ZBTB21, UMODL1) 0 1 NA 0.78947290738986 33 0.745393497361689 3 3 0 -5.76468349833738 LTS-023 chr21 43496365 43800289 303925 * c(UMODL1-AS1, TMPRSS3, TFF1, TFF2, TFF3, UMODL1, ABCG1) 0.303249584138561 19 0.221335182828882 0.785425039041286 420 0.425071858341562 3 2 1 -6.75244062339737 LTS-023 chr21 43800290 43815661 15372 * TMPRSS3 0.498 1 NA 0.86715363511079 57 0.260510318298239 4 4 0 -5.76634256823915 LTS-023 chr21 43815662 44189172 373511 * c(PDE9A, UBASH3A, SLC37A1, TMPRSS3, RSPH1) 0.443151477168622 17 0.115983264512855 0.774553256630209 385 0.29062013688153 4 2 2 -6.96745102910813 LTS-023 chr21 44189173 44195325 6153 * PDE9A 0 1 NA 0.8192091712797 13 0.0848306759948522 3 3 0 -5.76877903631932 LTS-023 chr21 44195326 44452813 257488 * c(WDR4, NDUFV3, PDE9A, PKNOX1) 0.287817962126943 9 0.217421313991471 0.772639102705636 259 0.314537532748236 3 2 1 -6.76971920353869 LTS-023 chr21 44452814 44452838 25 * PKNOX1 0.36 1 NA 0.885903014874522 3 0.462850227755516 4 4 0 -5.7644107785709 LTS-023 chr21 44452839 45157373 704535 * c(HSF2BP, LINC00313, CRYAA, SIK1, RRP1B, LINC00319, PKNOX1, U2AF1, PDXK, CBS) 0.451149634917338 34 0.0343635279025724 0.76949858000497 642 0.224727474573881 4 2 2 -8.39590079917339 LTS-023 chr21 45157374 45223937 66564 * c(CSTB, PDXK, RRP1) 0 1 NA 0.803075206308777 313 0.265275425249101 3 3 0 -5.76738620741197 LTS-023 chr21 45223938 45644950 421013 * c(AATBC, AGPAT3, PWP2, TRAPPC10, C21orf33, RRP1) 0.314134883497312 9 0.197907245389798 0.790336754953656 592 0.214653870940383 3 2 1 -6.76100471813412 LTS-023 chr21 45644951 45646131 1181 * character(0) 0.458 1 NA 0.768387333929006 23 0.206416354638993 3 3 0 -5.76442342232323 LTS-023 chr21 45646132 45649848 3717 * ICOSLG 0.47278019931672 11 0.0203813640367861 0.832886204884408 85 0.296191558312667 4 2 2 -10.7273694040456 LTS-023 chr21 45649849 45656920 7072 * ICOSLG 0.481 1 NA 0.738724465489149 17 0.184245081345473 3 3 0 -5.76442550760173 LTS-023 chr21 45656921 45725715 68795 * c(ICOSLG, DNMT3L, AIRE, PFKL) 0.212419388542336 9 0.232186347574529 0.76041344976757 186 0.338209077613508 4 3 1 -6.7863359940974 LTS-023 chr21 45725716 45725728 13 * PFKL 0.485 1 NA 0.55 1 NA NA NA NA NA LTS-023 chr21 45725729 45774666 48938 * c(PFKL, TRPM2, C21orf2) 0.452812354173814 14 0.0307800599075455 0.803384744411918 230 0.194996799884166 4 2 2 -8.29068556463368 LTS-023 chr21 45774667 45797611 22945 * TRPM2 0 1 NA 0.844484806705099 23 0.350345899093821 3 3 0 -5.76609851918492 LTS-023 chr21 45797612 46074111 276500 * c(LRRC3-AS1, TSPEAR-AS2, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, TSPEAR, TRPM2, LRRC3) 0.302530369215847 49 0.20199038924399 0.822987984255198 624 0.576894859278067 3 2 1 -6.7587393519774 LTS-023 chr21 46074112 46086488 12377 * c(KRTAP12-2, KRTAP12-3, KRTAP12-4, TSPEAR) 0.48 1 NA 0.824004995586176 29 0.192535973223763 3 3 0 -5.76633963588995 LTS-023 chr21 46086489 46330674 244186 * c(KRTAP12-2, KRTAP12-1, ITGB2, KRTAP10-12, TSPEAR, SUMO3, UBE2G2, PTTG1IP) 0.467475147069857 22 0.0294108455420417 0.754038298196569 351 0.351509751936053 4 2 2 -9.11866974492055 LTS-023 chr21 46330675 46355498 24824 * c(ITGB2-AS1, ITGB2, LINC01547) 0 1 NA 0.735304784585082 45 0.567009872003561 3 3 0 -5.7644215980947 LTS-023 chr21 46355499 46914150 558652 * c(COL18A1-AS2, ADARB1, POFUT2, PICSAR, COL18A1-AS1, LOC642852, LINC00163, SSR4P1, COL18A1, LINC01547, FAM207A) 0.300686948190753 20 0.179758288001592 0.77065555393852 543 0.338128699608291 3 2 1 -6.76504837733605 LTS-023 chr21 46914151 46914576 426 * COL18A1 0.488 1 NA 0.807121743167519 9 0.2673947352594 3 3 0 -5.76443153271997 LTS-023 chr21 46914577 47847560 932984 * c(LOC100129027, FTCD, MCM3AP-AS1, COL6A1, COL6A2, LSS, PCNT, PCBP3, C21orf58, YBEY, SLC19A1, COL18A1, SPATC1L, MCM3AP) 0.384679346150905 87 0.161578687580197 0.782049495411095 1523 0.339303997398939 3 2 1 -6.78795598633773 LTS-023 chr21 47847561 47859937 12377 * PCNT 0 1 NA 0.757738405474945 50 0.207269625249385 3 3 0 -5.76444559115275 LTS-023 chr21 47859938 47980570 120633 * c(DIP2A-IT1, DIP2A, PCNT) 0.270656902588266 9 0.241516965127596 0.796496222933907 228 0.336774792808459 4 3 1 -6.75985614153259 LTS-023 chr21 47980571 47983680 3110 * DIP2A 0.405 1 NA 0.760442462767386 13 0.284194926784868 3 3 0 -5.76441752226835 LTS-023 chr21 47983681 48084820 101140 * c(DIP2A, PRMT2, S100B) 0.410854540071228 9 0.158383237749454 0.737122685733861 187 0.21500420114294 4 2 2 -6.84023228832148 LTS-023 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.30875101618444 5 0.207332341905454 5 NA NA -5.76442585100127 LTS-023 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.462 1 NA 1.82445596801411 5 0.307377129923487 8 8 0 -5.77147605491343 LTS-023 chr22 16887896 17489130 601235 * c(GAB4, CCT8L2, XKR3, ANKRD62P1-PARP4P3, HSFY1P1, TPTEP1) 0.392761392557066 14 0.119456093363873 1.85446936102353 298 0.614752379317501 8 4 4 -6.73418066266513 LTS-023 chr22 17489131 17565846 76716 * CECR7 NA 0 NA 0.995 1 NA NA NA NA NA LTS-023 chr22 17565847 17671042 105196 * c(CECR5-AS1, IL17RA, CECR6, CECR5, CECR1) 0.453282034483678 8 0.0524840111707502 1.33135216304654 463 0.396839503879599 6 3 3 -7.3620833848412 LTS-023 chr22 17671043 17690417 19375 * CECR1 0 1 NA 1.25335636607848 27 0.689988339634743 5 5 0 -5.76444476783723 LTS-023 chr22 17690418 18273802 583385 * c(MIR3198-1, BCL2L13, CECR3, CECR2, CECR1, ATP6V1E1, MICAL3, BID, SLC25A18) 0.287566839745278 17 0.1976240489057 1.3298209534831 587 0.525777507286051 6 4 2 -6.77539613727046 LTS-023 chr22 18273803 18301190 27388 * MICAL3 0.452 1 NA 1.52368589850129 43 0.255907567840348 6 6 0 -5.76526960073697 LTS-023 chr22 18301191 18369916 68726 * MICAL3 0.459610599629792 13 0.0462663692445919 1.37366205227686 153 0.375750571983678 6 3 3 -7.6771922346143 LTS-023 chr22 18369917 18385383 15467 * MICAL3 0 1 NA 1.17299290131561 59 0.316511311466719 5 5 0 -5.76448592490404 LTS-023 chr22 18385384 19026025 640642 * c(FLJ41941, USP18, DGCR9, DGCR5, DGCR10, GGT3P, TUBA8, PEX26, PRODH, MICAL3, MIR648, DGCR6, DGCR2) 0.359310035631922 15 0.188246368459249 1.34626925654389 439 0.529658559683655 6 4 2 -6.74862828979404 LTS-023 chr22 19026026 19026590 565 * DGCR2 0 1 NA 1.40562860119321 13 1.02385337366697 6 6 0 -5.76441029256669 LTS-023 chr22 19026591 19375142 348552 * c(TSSK2, DGCR11, GSC2, SLC25A1, HIRA, CLTCL1, DGCR14, DGCR2) 0.21332762620834 12 0.222193387649479 1.29855836661165 548 0.61116340719514 5 4 1 -6.73606591649189 LTS-023 chr22 19375143 19419851 44709 * HIRA 0.46 1 NA 1.28635789986307 73 0.512312904557908 5 5 0 -5.76482419020896 LTS-023 chr22 19419852 19702195 282344 * c(SEPT5-GP1BB, C22orf39, LINC00895, MRPL40, CLDN5, HIRA, UFD1L, CDC45) 0.457032185132433 6 0.031093407661432 1.3428375552544 331 1.39081807696989 6 3 3 -8.41676276597718 LTS-023 chr22 19702196 19702259 64 * SEPT5-GP1BB NA 0 NA 0.894 1 NA NA NA NA NA LTS-023 chr22 19702260 19772746 70487 * c(SEPT5-GP1BB, TBX1) 0.323874988092411 3 0.0442417600614321 1.08366219082002 213 0.219200721451548 6 4 2 -6.84189674744999 LTS-023 chr22 19772747 19772757 11 * character(0) 0.234 1 NA 0.063 1 NA NA NA NA NA LTS-023 chr22 19772758 19833989 61232 * c(GNB1L, C22orf29) 0.159924555714059 9 0.165543045761518 1.19013539837919 119 0.828087709179926 7 6 1 -6.7394039989908 LTS-023 chr22 19833990 19834026 37 * c(GNB1L, C22orf29) 0.343 1 NA 0.871087427568337 2 0.101116269709676 4 4 0 -5.76443794752736 LTS-023 chr22 19834027 20052566 218540 * c(MIR4761, TXNRD2, TANGO2, COMT, MIR185, ARVCF, GNB1L, C22orf29) 0.30937818918715 33 0.0715156266034553 1.08336760485453 579 0.306020478488692 6 4 2 -6.9204033346835 LTS-023 chr22 20052567 20052746 180 * TANGO2 0 1 NA 1.68609674177123 3 1.1477309498891 7 7 0 -5.76441014512157 LTS-023 chr22 20052747 20100055 47309 * c(MIR1306, MIR3618, TANGO2, TRMT2A, DGCR8) 0.176799814729743 10 0.184846362630639 1.13458814721954 158 0.621908310238436 6 5 1 -6.73744765981868 LTS-023 chr22 20100056 20102046 1991 * TRMT2A 0.323 1 NA 1.18853800419081 23 0.316690245290963 5 5 0 -5.76441297239904 LTS-023 chr22 20102047 20255097 153051 * c(MIR1286, LINC00896, TRMT2A, LOC284865, ZDHHC8, CCDC188, RANBP1, RTN4R) 0.294690416633799 11 0.117308451218455 1.15240195067583 317 0.299865439348134 4 3 1 -6.79868845416585 LTS-023 chr22 20255098 20295369 40272 * RTN4R 0 1 NA 0.976771007912609 36 0.193452120732426 4 4 0 -5.76441016909537 LTS-023 chr22 20295370 20305282 9913 * DGCR6L NA 0 NA 0.981597186573276 36 0.318628310104422 4 NA NA -5.76441142746362 LTS-023 chr22 20305283 20307253 1971 * DGCR6L NA 0 NA 0.97 1 NA NA NA NA NA LTS-023 chr22 20307254 20398710 91457 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.391172284927751 39 0.315423790068902 2 NA NA -5.80696471525162 LTS-023 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.611 1 NA NA NA NA NA LTS-023 chr22 20717835 21965298 1247464 * c(TUBA3FP, CRKL, AIFM3, HIC2, POM121L4P, POM121L8P, SERPIND1, PI4KAP2, LRRC74B, BCRP2, THAP7-AS1, P2RX6P, MED15, PI4KA, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29) 0.216050187810083 36 0.148720711402279 1.08392083432476 1651 0.452048003317545 5 4 1 -6.77513840046504 LTS-023 chr22 21965299 21977047 11749 * UBE2L3 0.345 1 NA 0.966364113591515 29 0.210125484441613 4 4 0 -5.7644292503903 LTS-023 chr22 21977048 21991224 14177 * c(YDJC, CCDC116, UBE2L3) 0.307418985929349 11 0.0306116436551964 1.07161217192886 133 0.344000531355728 10 7 3 -6.78613727506599 LTS-023 chr22 21991225 21991564 340 * CCDC116 0 1 NA 1.27102042215378 7 0.156712961751581 5 5 0 -5.7644322349911 LTS-023 chr22 21991565 22240100 248536 * c(MIR301B, CCDC116, SDF2L1, PPIL2, YPEL1, MIR130B, MAPK1) 0.14251604152012 3 0.148597891416175 1.0248247431229 292 0.419778786693704 6 5 1 -6.86836874478574 LTS-023 chr22 22240101 22273767 33667 * character(0) NA 0 NA 1.546 1 NA NA NA NA NA LTS-023 chr22 22273768 22276865 3098 * PPM1F NA 0 NA 1.81666268846023 66 0.35277283511273 8 NA NA -5.76443818322444 LTS-023 chr22 22276866 22577868 301003 * c(TOP3B, PPM1F) 0.0911182946619643 6 0.158068023331729 1.08047676775849 288 0.615239224777249 4 4 0 -6.8260774608243 LTS-023 chr22 22577869 22599674 21806 * VPREB1 0.336 1 NA 1.40412091568786 39 0.650141255283698 6 6 0 -5.76442678084613 LTS-023 chr22 22599675 22707782 108108 * c(VPREB1, BMS1P20) 0.281267160575041 11 0.0390472906754221 1.33412807557941 71 1.30823559246504 11 8 3 -6.75406136769582 LTS-023 chr22 22707783 22712183 4401 * character(0) 0 1 NA 1.49516054158094 5 1.73597739040576 6 6 0 -5.76441151058643 LTS-023 chr22 22712184 22786339 74156 * character(0) 0.197822498678332 11 0.161743849117278 1.19378292694277 92 0.952543978040035 5 4 1 -6.74002068965856 LTS-023 chr22 22786340 22786792 453 * character(0) 0.347 1 NA 1.06039115746556 9 0.264589986792983 4 4 0 -5.76443612511505 LTS-023 chr22 22786793 22907775 120983 * c(ZNF280A, ZNF280B, PRAME, LL22NC03-63E9.3) 0.307623509141145 9 0.0285589059858936 1.02174029931995 206 0.307439593376743 7 5 2 -7.0736315236649 LTS-023 chr22 22907776 22907891 116 * LL22NC03-63E9.3 0 1 NA 1.6403720148491 5 1.86992334067469 7 7 0 -5.76441013980539 LTS-023 chr22 22907892 23241772 333881 * c(IGLL5, POM121L1P, LL22NC03-63E9.3, MIR650, GGTLC2) 0.183648141018253 11 0.160547415822469 1.01864022127828 259 0.6266947996063 5 4 1 -6.77088953262971 LTS-023 chr22 23241773 23247117 5345 * character(0) 0.474 1 NA 1.00656274050348 7 0.488889850287655 4 4 0 -5.76442205850974 LTS-023 chr22 23247118 23504405 257288 * c(RSPH14, GNAZ, RAB36) 0.294752000371614 9 0.119676647680322 1.14074910356446 246 0.445807275135564 4 3 1 -6.7882390546837 LTS-023 chr22 23504406 23504706 301 * RAB36 0 1 NA 1.80472275814399 7 1.98657657194241 8 8 0 -5.76441024838423 LTS-023 chr22 23504707 24040807 536101 * c(ZDHHC8P1, FBXW4P1, RGL4, IGLL1, DRICH1, BCR, CES5AP1, GUSBP11, RAB36) 0.212403331421643 20 0.138623790393849 1.04013310661318 414 0.566322787816277 5 4 1 -6.75541754188361 LTS-023 chr22 24040808 24084758 43951 * c(RGL4, ZNF70, GUSBP11) 0.339 1 NA 1.09731586497373 23 0.409592991849631 5 5 0 -5.76583722154437 LTS-023 chr22 24084759 24178279 93521 * c(C22orf15, VPREB3, CHCHD10, MMP11, SMARCB1, ZNF70, DERL3) 0.310795259870188 12 0.0399336571039639 1.07053181053 290 0.270956522365286 7 5 2 -7.00160906851568 LTS-023 chr22 24178280 24178632 353 * DERL3 0 1 NA 1.19439961231544 7 1.59643843184342 5 5 0 -5.76441014382143 LTS-023 chr22 24178633 24325024 146392 * c(DDTL, DDT, MIF-AS1, MIF, SLC2A11, DERL3) 0.236843392052461 12 0.154879694269358 1.01432470102554 250 0.354187477050782 4 3 1 -6.75391471297418 LTS-023 chr22 24325025 24384316 59292 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.25577367678057 66 0.476795015892036 5 NA NA -5.76465538232726 LTS-023 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.8 1 NA NA NA NA NA LTS-023 chr22 24400149 24434816 34668 * c(CABIN1, GSTTP2) 0 1 NA 0.780954254024856 17 0.254359851044793 3 3 0 -5.7650467268243 LTS-023 chr22 24434817 42778979 18344163 * c(LOC100128531, LOC100130899, NDUFA6-AS1, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, NA NA NA NA NA NA NA NA NA LTS-023 SGSM1, EMID1, ANKRD54, ADORA2A, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, ZC3H7B, TTC28, SPECC1L, GCAT, CBX6, NPTXR, PES1, CBX7, CABIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, XRCC6, TMEM211, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TXN2, TMEM184B, GGA1, SEC14L3, GGT1, SNORD43, GGT5, INPP5J, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, POM121L9P, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 SDC4P, LRRC75B, OGFRP1, LGALS1, LGALS2, LIF, LIMK2, LOC400927, SRRD, MIR33A, MB, MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, UPB1, PMM1, POLR2F, MIEF1, TUG1, CCDC157, ZMAT5, SEPT3, SUSD2, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, XPNPEP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 BCRP3, ADORA2A-AS1, POM121L10P, FAM227A, SLC5A1, SMTN, SLC5A4, GATSL3, SNRPD3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TIMP3, TOP1P2, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1656, MICALL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, LARGE1, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.0359933840419751 600 0.0293812075338836 0.776712834279131 21751 0.338297162187742 3 3 0 -6.88270614086718 LTS-023 NA NA NA NA LTS-023 chr22 42778980 42779752 773 * NFAM1 0.068 1 NA 0.808153041082619 17 0.177320995074237 3 3 0 -5.76450145876712 LTS-023 chr22 42779753 42908289 128537 * c(NFAM1, RRP7A, SERHL) 0.0854662698474571 9 0.172110994548415 0.812955637576385 125 0.325076880633767 3 3 0 -6.78159301736586 LTS-023 chr22 42908290 42910283 1994 * c(RRP7A, SERHL) 0 1 NA 1.01417845847199 21 0.349435817391679 4 4 0 -5.76442379702124 LTS-023 chr22 42910284 51183255 8272972 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, NA NA NA NA NA NA NA NA NA LTS-023 PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.0381929545125306 334 0.0264660966452725 0.784922149221224 8138 0.34754420966006 3 3 0 -6.83296106040782 LTS-023 NA NA NA NA LTS-023 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.650031432274003 69 0.279723916989092 3 NA NA -5.76997378554946 LTS-023 chrX 2699993 2712661 12669 * XG 0.034 1 NA 0.490231353696366 9 0.183020338881897 2 2 0 -5.76504816381335 LTS-023 chrX 2712662 8501132 5788471 * c(LINC01546, MIR4770, MIR4767, MXRA5, VCX, ARSH, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, VCX2, VCX3A, PRKX, NLGN4X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.0645983203401855 57 0.0535494700193043 0.451833828686553 1283 0.249005469063097 2 2 0 -7.62243245087698 LTS-023 chrX 8501133 8502353 1221 * ANOS1 NA 0 NA 1.207 1 NA NA NA NA NA LTS-023 chrX 8502354 16189609 7687256 * c(GS1-600G8.3, LINC01203, CLDN34, PIR-FIGF, MSL3, CA5B, CLCN4, ASB11, ASB9, MOSPD2, TCEANC, FAM9A, FAM9B, FAM9C, FANCB, VEGFD, EGFL6, AMELX, GLRA2, GPM6B, GRPR, HCCS, CA5BP1, TLR8-AS1, SHROOM2, ANOS1, ARHGAP6, MID1, GPR143, TLR7, TLR8, PIGA, GEMIN8, WWC3, PRPS2, TMEM27, ACE2, TRAPPC2, MAGEB17, BMX, TBL1X, TMSB4X, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, FRMPD4) 0.0468306784647274 93 0.0677045133061278 0.665771536431648 4017 0.273965967523202 3 3 0 -7.46089413005968 LTS-023 chrX 16189610 56292210 40102601 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, SUPT20HL1, PHKA2-AS1, GAGE12D, LOC100132831, UXT-AS1, SCARNA9L, MIR500B, MTRNR2L10, MIR23C, MIR4769, MIR4536-1, MIR4768, HUWE1, PQBP1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SSX3, TIMM17B, RRAGB, SCML2, PRDX4, EBP, RAI2, MAGED2, PIM2, IL1RAPL1, WDR45, PRAF2, KLF8, CLCN5, BEND2, DGKK, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, FOXR2, PAGE3, CYBB, NA NA NA NA NA NA NA NA NA LTS-023 ZNF645, USP27X-AS1, FAM47A, RIBC1, MAGEB6, USP51, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, XAGE3, XAGE5, NUDT10, DMD, NR0B1, EIF1AX, EIF2S3, ELK1, PAGE2, ALAS2, FGD1, CNKSR2, IQSEC2, PHF8, ACOT9, SMPX, GSPT2, FTSJ1, CXorf58, GAGE1, CXorf23, MAP7D2, KLHL34, TAB3, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GK, GPR82, GPKOW, APEX2, PCSK1N, SSX6, SSX7, SSX8, SSX9, GPR34, LINC01281, CFAP47, MAGEB18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 CCDC22, MAGEH1, SH3KBP1, HSD17B10, ERAS, ZNF81, ITIH6, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, MAP3K15, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, YY2, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, SPANXN5, TBC1D25, OTC, FOXP3, CDK16, MBTPS2, PDHA1, PDK3, CFP, PFKFB1, PHEX, PHKA2, PLP2, FTHL17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 POLA1, GPR173, NDUFB11, GNL3L, PPEF1, BCOR, FAM120C, NUDT11, OTUD5, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, MID1IP1, RBBP7, RBM3, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, NA, WDR13, PORCN, WNK3, XAGE1B, SMS, SSX1, SSX5, SCARNA23, SNORA11, CDKL5, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 TSPAN7, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, LOC729609, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, ZNF41, ZNF157, CACNA1F, APOO, S100G, CXorf36, MAGIX, CXorf21, EFHC2, KLHL15, PPP1R2P9, MAGED4B, USP11, USP9X, RBM10, KDM5C, SMC1A, TMEM47, SRPX, UXT, SLC9A7, CCNB3, INE1, CASK, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, RGN, REPS2, BMP15, SLC38A5, MED14, SYAP1, SYTL5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 PCYT1B, MAGED1, PAGE4, JADE3) 0.064291061159752 348 0.0766690678960087 0.452230930234486 19895 0.181213451410977 2 2 0 -11.7807462786566 LTS-023 NA NA NA NA LTS-023 chrX 56292211 57937169 1644959 * c(KLF8, FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA) NA 0 NA 0.444887516179633 467 0.11613055361885 2 NA NA -7.07820251299368 LTS-023 chrX 61999880 62856100 856221 * c(SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.448431906321799 123 0.157146105818451 2 2 0 -6.15780976157851 LTS-023 chrX 62856101 91134650 28278550 * c(MIR374B, UBE2DNL, MIR1468, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, CHM, VSIG4, DACH2, COX7B, MAP2K4P1, AMER1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, PABPC5, ASB12, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, FAM46D, DLG3, EDA, EFNB1, ZCCHC5, ABCB7, ARHGEF9, KIF4A, BRWD3, ITGB1BP2, GJB1, FAM155B, INGX, PCDH11X, RPS6KA6, P2RY10, CXCR3, LPAR4, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, NA NA NA NA NA NA NA NA NA LTS-023 ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, CITED1, MSN, NAP1L2, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NLGN3, POU3F4, ATRX, ERCC6L, GDPD2, JPX, MTMR8, HDAC8, ZC4H2, KLHL4, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 SLC16A2, MIR545, TAF1, MIR421, XIST, ZNF711, HMGN5, POF1B, LAS1L, FRMD8P1, MAGT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, ITM2A, STARD8, HEPH, MED12) 0.0463886694199177 134 0.0536418612295986 0.444648322768412 10392 0.171615945071519 2 2 0 -11.7873288867172 LTS-023 NA NA NA NA LTS-023 chrX 91134651 91138854 4204 * PCDH11X 0.130493552864596 3 0.0150443787951957 0.211142811892821 40 0.147285086804034 8 7 1 -7.37164362730527 LTS-023 chrX 91138855 117570535 26431681 * c(ARMCX4, LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, TCEAL2, RAB40A, CSTF2, AMOT, TCEAL6, H2BFWT, DCX, TIMM8A, DIAPH2, DRP2, TSC22D3, AGTR2, CT83, NRK, TMEM31, ACSL4, KCNE5, CENPI, IL1RAPL2, BEX3, NOX1, GLA, SRPX2, PCDH11X, RAB40AL, H2BFM, NA NA NA NA NA NA NA NA NA LTS-023 LOC286437, FAM133A, TMSB15B, GUCY2F, RPA4, HNRNPH2, HTR2C, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, ARL13A, SLC25A53, LINC00890, XKRX, GLRA4, XRCC6P5, NAP1L3, PAK3, TCEAL9, RAB9B, LUZP4, ARMCX1, ARMCX3, PLP1, PLS3, TAF7L, ARMCX6, WDR44, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF5, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, RGAG1, LRCH2, TMEM35A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 RPL36A, TNMD, BRDTP1, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, BTK, TDGF1P3, TSPAN6, TRPC5, RNF128, MORC4, ALG13, TCEAL4, TRMT2B, ESX1, BHLHB9, CAPN6, TMEM164, ZMAT1, BEX2, IRS4, TCEAL3, KLHL13, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, SYTL4, MORF4L2, GPRASP1, ARMCX2, AMMECR1) 0.0482953564225071 153 0.0618841734920373 0.453225152389599 9837 0.202024539016993 2 2 0 -10.2693937973174 LTS-023 NA NA NA NA LTS-023 chrX 117570536 119007459 1436924 * c(SLC25A5-AS1, PGRMC1, DOCK11, ZCCHC12, SLC25A43, SEPT6, SNORA69, SLC25A5, SOWAHD, IL13RA1, NDUFA1, WDR44, NKRF, KIAA1210, RPL39, CXorf56, UPF3B, UBE2A, MIR766, RNF113A, LONRF3) 0.0621707498681544 33 0.052591640797927 0.420250191719009 1511 0.16260819408975 2 2 0 -7.88876870126057 LTS-023 chrX 119007460 119007463 4 * NDUFA1 NA 0 NA 0.527 1 NA NA NA NA NA LTS-023 chrX 119007464 119054728 47265 * c(AKAP14, NDUFA1) 0 1 NA 1.06790787534006 39 0.393126615433861 4 4 0 -5.76586235824315 LTS-023 chrX 119054729 119059045 4317 * NKAP NA 0 NA 0.307 1 NA NA NA NA NA LTS-023 chrX 119059046 136659829 17600784 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, PRR32, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, DCAF12L1, ADGRG4, ACTRT1, GPR119, ARHGAP36, RHOXF1, NKAPP1, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, GPC4, FHL1, ATP1B4, CT47A11, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, FIRRE, GRIA3, MCTS1, C1GALT1C1, HPRT1, XIAP, DCAF12L2, OR13H1, CCDC160, IGSF1, LAMP2, SMIM10L2A, NA NA NA NA NA NA NA NA NA LTS-023 SH2D1A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, RAP2C, BCORL1, CT47B1, SMIM10, SMIM10L2B, CT47A7, SMARCA1, MIR542, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, XPNPEP2, ZIC3, ZNF75D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 NKAP, MAP7D3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.0557673826875512 105 0.0590441211447697 0.436024919207106 7207 0.177114608605322 2 2 0 -11.0744560609397 LTS-023 NA NA NA NA LTS-023 chrX 137713748 137821566 107819 * c(FGF13-AS1, FGF13, MIR504) NA 0 NA 0.807315120361027 75 0.194792705710964 3 NA NA -5.77468502104495 LTS-023 chrX 137821567 137939699 118133 * FGF13 NA 0 NA 0.431 1 NA NA NA NA NA LTS-023 chrX 137939700 139038443 1098744 * c(F9, FGF13, ATP11C, CXorf66, MCF2, MIR505, SRD5A1P1) 0.0481386355588253 8 0.0457350678207809 0.435291423806819 480 0.202447868224067 2 2 0 -7.19196270799903 LTS-023 chrX 139038444 139866477 828034 * c(CDR1, LINC00632, CXorf66, LOC389895, SOX3) 0.103 1 NA 0.399895806738199 141 0.10736576454415 2 2 0 -7.76279460046233 LTS-023 chrX 139866478 140993913 1127436 * c(MIR320D2, CDR1, MAGEC3, NA, NA, LDOC1, SPANXA2-OT1, SPANXC, MAGEC1) 0.271865325288436 9 0.109216273716166 0.457852520692308 169 0.271421918249791 2 1 1 -7.56186776397965 LTS-023 chrX 140993914 140993980 67 * MAGEC1 0.045 1 NA 0.497401514321632 3 0.312971244685514 2 2 0 -5.76441073417525 LTS-023 chrX 140993981 154507173 13513193 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, SLITRK4, SPANXN3, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, FMR1, NA NA NA NA NA NA NA NA NA LTS-023 AFF2, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MPP1, SPANXN4, MTCP1, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, NA NA NA NA NA NA NA NA NA NA NA NA LTS-023 MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, SLITRK2, IKBKG, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.0563987280449593 195 0.069133964510239 0.452103003876222 8527 0.222741550927844 2 2 0 -8.77941743958589 LTS-023 NA NA NA NA LTS-023 chrX 154507174 154774986 267813 * c(CLIC2, TMLHE) NA 0 NA 0.415348436454575 105 0.145328705356969 2 NA NA -6.10813483798444 LTS-023 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.298326982124574 25 0.299182636528258 1 NA NA -5.77140467141382 LTS-023 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.354 1 NA 0.563480592705856 17 0.730798752172218 2 2 0 -5.82923250170926 LTS-023 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 2.10070433917215 3 0.482664825042527 9 NA NA -5.76441017540819 LTS-023 chr1 65893 878314 812422 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.126 1 NA 0.72258539763079 90 0.245798528990579 2 2 0 -5.8901452308878 LTS-024 chr1 878315 1027567 149253 * c(SAMD11, NOC2L, KLHL17, AGRN, RNF223, C1orf159, HES4, PLEKHN1, PERM1, ISG15) 0.178900269029325 29 0.054842317629324 0.670162403757462 748 0.242540521257856 2 2 0 -6.82476145657139 LTS-024 chr1 1027568 1078100 50533 * c(LINC01342, C1orf159) NA 0 NA 1.252 1 NA NA NA NA NA LTS-024 chr1 1078101 1142102 64002 * c(LINC01342, TTLL10, MIR200A, MIR200B, MIR429, TNFRSF18) 0.145221881907907 7 0.0232624774506684 1.0727736422211 162 0.243943042135146 3 3 0 -6.85798868145394 LTS-024 chr1 1142103 1146666 4564 * character(0) NA 0 NA 0.583 1 NA NA NA NA NA LTS-024 chr1 1146667 1258750 112084 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, FAM132A, SDF4, CPSF3L, SCNN1D, TNFRSF4) 0.182987325081802 4 0.0516357434341755 0.690221950411703 625 0.172604222695471 2 2 0 -6.81225045249646 LTS-024 chr1 1258751 1259949 1199 * CPSF3L NA 0 NA 1.18 1 NA NA NA NA NA LTS-024 chr1 1259950 1481873 221924 * c(LOC148413, DVL1, ATAD3C, SSU72, TMEM240, ANKRD65, MXRA8, CPSF3L, AURKAIP1, MRPL20, ATAD3A, TMEM88B, VWA1, CPTP, CCNL2, TAS1R3, ATAD3B) 0.0904177687565266 7 0.11402881841259 1.08174428228679 964 0.264388766920709 5 5 0 -6.76711733872018 LTS-024 chr1 1481874 1497678 15805 * SSU72 NA 0 NA 0.477 1 NA NA NA NA NA LTS-024 chr1 1497679 1563789 66111 * c(MIB2, SSU72, FNDC10) 0.21010951975293 4 0.0272763633939717 0.683316554977031 174 0.184691514561785 2 2 0 -6.81954186618712 LTS-024 chr1 1563790 1573181 9392 * c(MIB2, MMP23B, CDK11B) 0.276 1 NA 0.779458046328434 61 0.214963803027444 3 3 0 -5.76485560804881 LTS-024 chr1 1573182 1597446 24265 * c(SLC35E2B, CDK11B) 0.298912999726881 13 0.104517818380286 0.775494191226119 186 0.340773802473421 4 3 1 -6.75235998839719 LTS-024 chr1 1597447 1599762 2316 * c(SLC35E2B, CDK11B) NA 0 NA 0.516 1 NA NA NA NA NA LTS-024 chr1 1599763 1630875 31113 * c(SLC35E2B, CDK11B) 0.326076951545867 2 0.137885822331377 0.512371189212943 45 0.175695995481635 1 1 0 -6.79569199056607 LTS-024 chr1 1630876 1670958 40083 * c(CDK11A, SLC35E2B, MMP23A, CDK11B, SLC35E2) 0.300415656184402 36 0.116408840961365 0.914146445058175 242 0.593845409145602 4 3 1 -6.74019833120115 LTS-024 chr1 1670959 1683694 12736 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 1.34413284026539 21 1.43787017759569 6 NA NA -5.76441654053138 LTS-024 chr1 1683695 1683900 206 * NADK 0.208 1 NA 0.808271385363598 5 0.224885971105358 3 3 0 -5.76441155263907 LTS-024 chr1 1683901 7896042 6212142 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-024 MIR551A, TP73, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, THAP3, VAMP3, PLCH2, CEP104, KLHL21) 0.18492975686293 118 0.0575413914849883 0.683995858513656 5577 0.188331392863549 2 2 0 -7.26538173938806 LTS-024 NA NA NA NA LTS-024 chr1 7896043 7897051 1009 * PER3 NA 0 NA 0.536 1 NA NA NA NA NA LTS-024 chr1 7897052 12359395 4462344 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, TNFRSF1B, NA NA NA NA NA NA NA NA NA LTS-024 CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, FBXO44, TNFRSF8, H6PD, MFN2) 0.18328879925335 114 0.0548088214511595 0.652472739480323 5929 0.174380528264446 2 2 0 -6.83918251184532 LTS-024 NA NA NA NA LTS-024 chr1 12359396 12364592 5197 * VPS13D NA 0 NA 0.888 1 NA NA NA NA NA LTS-024 chr1 12364593 12907351 542759 * c(AADACL3, AADACL4, HNRNPCL1, PRAMEF12, PRAMEF11, VPS13D, HNRNPCL3, PRAMEF1, SNORA59B, DHRS3, C1orf158) 0.0767891917743412 7 0.0519225613866687 1.05641451420526 619 0.597939496191776 6 6 0 -6.849126592241 LTS-024 chr1 12907352 12907385 34 * c(HNRNPCL1, HNRNPCL3) 0.271 1 NA 3.135 1 NA NA NA NA NA LTS-024 chr1 12907386 13447650 540265 * c(HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.302030141991924 18 0.130219786555107 1.26939149389038 76 0.918061831040827 4 3 1 -6.75533118957144 LTS-024 chr1 13447651 13802019 354369 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, PRAMEF19, PRAMEF20, NA) 0.071 1 NA 0.999579250986189 29 0.544503491011892 4 4 0 -5.76467860429048 LTS-024 chr1 13802020 16274769 2472750 * c(PDPN, CTRC, FHAD1, LRRC38, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SLC25A34, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.10869881488001 75 0.0405463009721297 1.04824210688615 2158 0.320621153012085 4 4 0 -6.84032423749585 LTS-024 chr1 16274770 16330816 56047 * c(C1orf64, ZBTB17) 0.307 1 NA 1.05994923922176 15 0.377751026597199 4 4 0 -5.76477395653645 LTS-024 chr1 16330817 16330851 35 * C1orf64 NA 0 NA 0.954 1 NA NA NA NA NA LTS-024 chr1 16330852 16332361 1510 * C1orf64 NA 0 NA 1.458 1 NA NA NA NA NA LTS-024 chr1 16332362 17010006 677645 * c(MST1P2, CROCCP3, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, SZRD1, HSPB7, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.375904741258487 83 0.0544057875134382 1.46031400640544 1301 4.51707810498706 11 7 4 -6.73774189697015 LTS-024 chr1 17010007 17010048 42 * character(0) NA 0 NA 2.101 1 NA NA NA NA NA LTS-024 chr1 17010049 17030650 20602 * ESPNP 0.359414958830675 7 0.0986571745755883 2.40198392946016 86 0.749918221533314 9 6 3 -6.73554412732504 LTS-024 chr1 17030651 17033735 3085 * ESPNP NA 0 NA 1.855 1 NA NA NA NA NA LTS-024 chr1 17033736 17274945 241210 * c(MST1L, ESPNP, CROCC) 0.339945481443839 38 0.102130480930695 1.79323256494735 297 0.838070306688281 9 6 3 -6.74661985782105 LTS-024 chr1 17274946 17275407 462 * CROCC NA 0 NA 1.39 1 NA NA NA NA NA LTS-024 chr1 17275408 18691765 1416358 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.346668350211579 11 0.0576246475043449 1.50914259655013 1213 0.317193925858333 6 4 2 -6.82541934455135 LTS-024 chr1 18691766 18811830 120065 * c(KLHDC7A, IGSF21) 0.287996048713531 3 0.256298653917651 1.11475630800403 123 0.678538585899857 5 4 1 -6.7397062522985 LTS-024 chr1 18811831 19166829 354999 * c(KLHDC7A, PAX7, TAS1R2) 0.464 1 NA 1.077369096344 181 0.20314405449184 4 4 0 -5.78032024651739 LTS-024 chr1 19166830 21755143 2588314 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.426120016976073 88 0.105972433251272 1.04010429488321 3585 0.349929430836892 4 2 2 -6.74339498728562 LTS-024 chr1 21755144 21755236 93 * character(0) NA 0 NA 1.494 1 NA NA NA NA NA LTS-024 chr1 21755237 21757078 1842 * character(0) 0.416862771184184 8 0.0613415496567026 1.62743321494078 39 0.856314814030883 12 7 5 -6.73344898459673 LTS-024 chr1 21757079 21757093 15 * character(0) NA 0 NA 0.722 1 NA NA NA NA NA LTS-024 chr1 21757094 21797243 40150 * NBPF3 0.349649240753761 3 0.102724550781852 0.653908130193389 50 0.396962324845745 3 2 1 -6.80252203660564 LTS-024 chr1 21797244 21798190 947 * NBPF3 NA 0 NA 1.574 1 NA NA NA NA NA LTS-024 chr1 21798191 22207268 409078 * c(ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3) 0.448355079595286 17 0.0618591854418518 1.07561466755437 946 0.265801471726767 4 2 2 -6.76739419110772 LTS-024 chr1 22207269 22207752 484 * HSPG2 NA 0 NA 1.805 1 NA NA NA NA NA LTS-024 chr1 22207753 22216604 8852 * HSPG2 0.430259901216417 5 0.0511888659768899 1.24789088676947 55 0.274250520780086 6 3 3 -6.74122815340345 LTS-024 chr1 22216605 22303465 86861 * c(CELA3B, HSPG2) 0.188 1 NA 1.33129138232058 25 0.293481191901628 6 6 0 -5.76599788932506 LTS-024 chr1 22303466 22418892 115427 * c(CELA3A, CELA3B, LINC00339, CDC42) 0.24852885739943 12 0.144355516526093 1.31275181363778 165 0.573524639442197 5 4 1 -6.7405945649695 LTS-024 chr1 22418893 22835677 416785 * c(WNT4, ZBTB40, CDC42) 0.36 1 NA 1.38681272058773 107 0.298716188566904 6 6 0 -5.76471170230075 LTS-024 chr1 22835678 24695749 1860072 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, FUCA1, GALE, MDS2, LOC284632, HMGCL, HTR1D, ID3, ASAP3, PNRC2, PITHD1, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, STPG1, ZBTB40) 0.367460023202245 90 0.0643152436192055 1.42313002797874 2889 0.346192877486573 6 4 2 -6.73849404082081 LTS-024 chr1 24695750 24935829 240080 * c(RCAN3AS, RCAN3, NCMAP, NIPAL3, STPG1) NA 0 NA 1.38808453804068 357 0.309456531951226 6 NA NA -5.76454465897151 LTS-024 chr1 24935830 24969499 33670 * character(0) NA 0 NA 0.956 1 NA NA NA NA NA LTS-024 chr1 24969500 25098341 128842 * c(SRRM1, CLIC4) 0.125 1 NA 0.95955977605401 141 0.181038537266749 4 4 0 -5.77294827466794 LTS-024 chr1 25098342 25245922 147581 * c(CLIC4, RUNX3) 0.117856064195325 2 0.0205060966544099 1.00925460452233 165 0.242074611924421 4 4 0 -6.80582160742208 LTS-024 chr1 25245923 25254080 8158 * RUNX3 NA 0 NA 0.602 1 NA NA NA NA NA LTS-024 chr1 25254081 25586803 332723 * c(SYF2, RSRP1, RUNX3) 0.213 1 NA 0.620984818662042 146 0.139558446165323 2 2 0 -5.7710016884066 LTS-024 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 0.954 1 NA NA NA NA NA LTS-024 chr1 25598904 25656954 58051 * c(RSRP1, RHD) 0.19742270124342 3 0.036428011200174 1.24491551742634 82 0.406009920513718 7 6 1 -6.74888531190994 LTS-024 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.81 1 NA NA NA NA NA LTS-024 chr1 25666924 27736512 2069589 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, EXTL1, WDTC1, TMEM50A, ZNF683, LDLRAP1, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, ACTG1P20, LOC646471, CEP85, SLC9A1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, TRIM63, SYTL1, FCN3, NA NA NA NA NA NA NA NA NA LTS-024 MAP3K6, UBXN11) 0.188236236102036 72 0.0407769611837405 0.646112424525426 3716 0.166480605866574 2 2 0 -6.79197715275862 LTS-024 NA NA NA NA LTS-024 chr1 27736513 27736616 104 * WASF2 NA 0 NA 0.482 1 NA NA NA NA NA LTS-024 chr1 27736617 29190138 1453522 * c(WASF2, GMEB1, RCC1, RAB42, FAM76A, EYA3, FGR, DNAJC8, STX12, IFI6, RNU11, AHDC1, SMPDL3B, OPRD1, YTHDF2, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1, THEMIS2) 0.185213558671836 13 0.0526590387205687 0.614895319695076 1931 0.144914225200851 2 2 0 -6.83128049002627 LTS-024 chr1 29190139 29213759 23621 * c(EPB41, OPRD1) NA 0 NA 0.556670908546692 9 0.135282215304813 2 NA NA -5.7784287394857 LTS-024 chr1 29213760 29313896 100137 * EPB41 NA 0 NA 1.101 1 NA NA NA NA NA LTS-024 chr1 29313897 29320013 6117 * EPB41 0.484 1 NA 0.932222214327043 13 0.141088352024266 4 4 0 -5.76587367123226 LTS-024 chr1 29320014 31532323 2212310 * c(MATN1-AS1, MIR4420, PTPRU, EPB41, TMEM200B, MATN1, MECR, SRSF4, SNORD103C, SNORD103A, LAPTM5, SDC3, PUM1) 0.467015150413599 19 0.0305539499843985 1.04997856078109 971 0.233794142826362 4 2 2 -7.3203508288366 LTS-024 chr1 31532324 31654259 121936 * c(NKAIN1, PUM1) NA 0 NA 0.749325890429338 52 0.199684321002673 3 NA NA -5.78265497035056 LTS-024 chr1 31654260 35350565 3696306 * c(FAM229A, MIR4254, MIR3605, KHDRBS1, SMIM12, AZIN2, TMEM54, CSMD2, GJB4, HMGB4, RNF19B, A3GALT2, COL16A1, DCDC2B, ZNF362, LINC01225, PHC2, TXLNA, AK2, FABP3, KPNA6, FNDC5, GJA4, GJB3, GJB5, LINC01226, HCRTR1, HDAC1, HPCA, MTMR9LP, ZBTB8OS, SERINC2, LCK, CSMD2-AS1, ZCCHC17, BSDC1, TMEM39B, TRIM62, PEF1, IQCC, TMEM234, ADGRB2, KIAA1522, DLGAP3, RBBP4, TINAGL1, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, ZSCAN20, NA NA NA NA NA NA NA NA NA LTS-024 CCDC28B, NKAIN1, PTP4A2, SYNC, TSSK3, FAM167B, C1orf94, YARS, EIF3I, SPOCD1, SNRNP40) 0.424502269474723 89 0.0656240394647346 1.15458041892301 4572 0.278369943031252 5 3 2 -6.81342188791361 LTS-024 NA NA NA NA LTS-024 chr1 35350566 36931954 1581389 * c(TMEM35B, OSCP1, C1orf216, COL8A2, CSF3R, AGO3, AGO4, NCDN, AGO1, TRAPPC3, TEKT2, TFAP2E, ADPRHL2, EVA1B, MAP7D1, PSMB2, DLGAP3, CLSPN, SFPQ, MRPS15, LOC653160, SH3D21, ZMYM1, KIAA0319L, STK40, LSM10, ZMYM4, ZMYM6, THRAP3) 0.450493857493855 24 0.100766186170572 0.995610198435585 2553 0.231880764976671 4 2 2 -6.75519311297613 LTS-024 chr1 36931955 36931998 44 * CSF3R NA 0 NA 1.206 1 NA NA NA NA NA LTS-024 chr1 36931999 39935381 3003383 * c(MIR4255, MIR3659, GJA9-MYCBP, MIR5581, SF3A3, C1orf122, CSF3R, MANEAL, FHL3, MACF1, MYCBP, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, INPP5B, MTF1, NDUFS5, UTP11, POU3F1, RHBDL2, C1orf109, CDCA8, RRAGC, KIAA0754, MEAF6, LINC01137, DNALI1, AKIRIN1, YRDC, SNIP1, ZC3H12A) 0.425503742014344 75 0.108355989869229 1.0714889828873 2994 0.27068133437973 4 2 2 -6.79969562247917 LTS-024 chr1 39935382 39945434 10053 * MACF1 NA 0 NA 1.479 1 NA NA NA NA NA LTS-024 chr1 39945435 41327267 1381833 * c(NFYC-AS1, ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, CITED4, MACF1, HEYL, ZFP69, BMP8A, MIR30C1, MIR30E, MYCL, NFYC, HPCAL4, TRIT1, PPT1, RLF, OXCT2, SMAP2, EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3) 0.397313493675815 28 0.0871741779518872 1.37979705346994 2150 0.382295272674993 6 4 2 -6.82732321577603 LTS-024 chr1 41327268 44044996 2717729 * c(LOC100129924, SLFNL1-AS1, PPIH, EBNA1BP2, MED8, ERMAP, TMEM125, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, RIMKLA, GUCA2A, GUCA2B, SVBP, MPL, SLC2A1-AS1, FAM183A, YBX1, ZNF691, PTPRF, HIVEP3, P3H1, ELOVL1, SLC2A1, TIE1, CCDC30, C1orf50, PPCS, HYI, ZMYND12, CDC20) 0.450469404977442 60 0.0676271662560188 1.06182312579718 2901 0.245019699561772 4 2 2 -6.80623173851976 LTS-024 chr1 44044997 44054443 9447 * PTPRF NA 0 NA 2.01 1 NA NA NA NA NA LTS-024 chr1 44054444 44083325 28882 * PTPRF 0.357682253859649 3 0.0855102333057278 1.65222554245643 111 0.387567674997158 9 6 3 -6.73768094234526 LTS-024 chr1 44083326 65845091 21761766 * c(EFCAB14-AS1, LINC01135, KDM4A-AS1, MIR761, MIR3671, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR5584, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, C1orf87, KLF17, CPT2, UBE2U, KNCN, MOB3C, GLIS1, CCDC24, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, NA NA NA NA NA NA NA NA NA LTS-024 DAB1, CYP4Z2P, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, DPH2, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, AK4, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, MMACHC, ACOT11, CYP4X1, BEST4, SNORD55, RNF11, FOXD3, ANGPTL3, CYP4A22, C1orf185, GPX7, ALG6, FAM151A, C1orf228, TCTEX1D4, FAM159A, IPP, JAK1, JUN, TEX38, MROH7, NSUN4, TRABD2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 LDLRAD1, SKINT1L, LINC01144, MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, MUTYH, NASP, NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HOOK1, HSPB11, CMPK1, PGM1, ATP6V0B, LURAP1, YIPF1, SPATA6, L1TD1, C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, POMGNT1, PRKAA2, NDC1, DMAP1, ZSWIM5, CACHD1, PTPRF, RAB3B, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, ST3GAL3, STIL, SLC1A7, COA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SLC6A9, TAL1, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, TM2D1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, DOCK7, MKNK1, PLPP3, PTCH2, B4GALT2, EIF2B3, ARTN, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, TMEM59, IPO13, KDM4A, EFCAB14, DNAJC6) 0.448065556765873 396 0.0733182043186823 1.03364052931385 15721 0.264023243630656 4 2 2 -6.78684913938137 LTS-024 NA NA NA NA LTS-024 chr1 65845092 66031385 186294 * c(LEPR, LEPROT, DNAJC6) 0.41357572914247 8 0.057890907255433 1.41985009631378 261 0.327753287560371 5 3 2 -6.7594989532485 LTS-024 chr1 66031386 66036152 4767 * LEPR NA 0 NA 1.145 1 NA NA NA NA NA LTS-024 chr1 66036153 89301916 23265764 * c(ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, IL23R, GADD45A, TCTEX1D1, SLC44A5, CLCA4, USP33, SLC35D1, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, SERBP1, AK5, SNORD45B, SNORD45A, GNG5, NA NA NA NA NA NA NA NA NA LTS-024 LINC01140, ACADM, CYR61, IL12RB2, MIGA1, UOX, LEPR, C1orf141, MIR186, LHX8, LINC01555, MSH4, TNNI3K, SH3GLB1, PDE4B, PIN1P1, ZNHIT6, GIPC2, MCOLN3, LRRC40, DEPDC1, PRKACB, PKN2, GNG12, PTGER3, PTGFR, ODF2L, LRRC7, MIER1, DNASE2B, RABGGTB, RPE65, ADGRL4, LOC646626, SNORD45C, TTLL7, WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, SGIP1, LMO4, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, ZRANB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CLCA3P, CLCA2, HS2ST1) 0.444613128971 142 0.0843232503429319 1.00278822311625 9523 0.584299741481958 4 2 2 -6.7500810253323 LTS-024 NA NA NA NA LTS-024 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.702 1 NA NA NA NA NA LTS-024 chr1 89318581 89649824 331244 * c(GBP4, GBP1, GBP2, GBP3, GTF2B, GBP7, RBMXL1, KYAT3) 0.451240829814955 16 0.0312126443395408 0.9175308525192 530 0.230716194041113 4 2 2 -6.91563822970744 LTS-024 chr1 89649825 89652078 2254 * GBP4 0.348 1 NA 0.906736394523799 23 0.269475695003517 3 3 0 -5.7645636348388 LTS-024 chr1 89652079 90472950 820872 * c(GBP4, GBP5, GBP6, LRRC8B, ZNF326, GBP1P1, FLJ27354, GEMIN8P4, LRRC8D, LOC729930, LRRC8C) 0.327214067277071 9 0.230262893232931 0.957523153767344 701 0.247657657678017 4 3 1 -6.76654835699056 LTS-024 chr1 90472951 90486412 13462 * ZNF326 0.397 1 NA 0.904772571630998 29 0.163640269894163 3 3 0 -5.76677896056478 LTS-024 chr1 90486413 94461860 3975448 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, HFM1, DR1, MTF2, KIAA1107, ABCA4, EPHX4, GFI1, SNORA66, GCLM, ZNF326, BTBD8, DNTTIP2, CCDC18, BARHL2, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, BCAR3, ZNF644) 0.448212976847902 22 0.100893411675295 0.95695678184334 2410 0.241164270402096 4 2 2 -6.90011406881238 LTS-024 chr1 94461861 94463423 1563 * ABCA4 NA 0 NA 1.565 1 NA NA NA NA NA LTS-024 chr1 94463424 94544326 80903 * ABCA4 0.429 1 NA 1.42680874097566 214 0.339388383990339 6 6 0 -5.76454756189465 LTS-024 chr1 94544327 94544866 540 * ABCA4 NA 0 NA 0.956 1 NA NA NA NA NA LTS-024 chr1 94544867 103342190 8797324 * c(LINC01349, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, OLFM3, CNN3, SLC44A3, LRRC39, COL11A1, TMEM56, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, F3, SLC35A3, ABCA4, RWDD3, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PTBP2, ABCD3, MFSD14A, MIR553, LOC729970, LOC729987, VCAM1, CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.414850591640848 42 0.129495494296031 1.00352111753599 2992 0.332100112628926 4 2 2 -6.76017452968083 LTS-024 chr1 103342191 103355145 12955 * COL11A1 0.341 1 NA 1.40498970676851 69 0.231126672604935 6 6 0 -5.76441115504613 LTS-024 chr1 103355146 109734054 6378909 * c(LOC100129138, VAV3-AS1, VAV3, HENMT1, C1orf194, COL11A1, NBPF4, FNDC7, NTNG1, WDR47, CLCC1, AKNAD1, AMY2A, AMY2B, FAM102B, GPSM2, SLC25A24, PRPF38B, PRMT6, RNPC3, TMEM167B, KIAA1324, SPATA42, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13) 0.434291209413508 42 0.0798338322176164 0.99293604880077 2014 0.378811880517372 4 2 2 -6.75126995018953 LTS-024 chr1 109734055 110838150 1104096 * c(AHCYL1, ATXN7L2, CSF1, UBL4B, CELSR2, ALX3, AMPD2, GNAI3, GNAT2, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PSMA5, AMIGO1, KIAA1324, SORT1, SARS, EPS8L3, GPR61, PSRC1, STRIP1) 0.45798798261797 36 0.0417400876931867 1.06896168700577 2533 0.258475044399444 4 2 2 -6.91918731261881 LTS-024 chr1 110838151 110876474 38324 * LOC440600 NA 0 NA 0.776 1 NA NA NA NA NA LTS-024 chr1 110876475 115604959 4728485 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, PPM1J, KCNA2, KCNA3, KCNA10, KCND3, RHOC, MOV10, LOC440600, BCL2L15, PGCP1, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, LRIF1, CTTNBP2NL, FAM212B, OLFML3, RAP1A, CYMP, LOC643355, NA NA NA NA NA NA NA NA NA LTS-024 LOC643441, RBM15, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, DENND2D, SIKE1, CAPZA1, PROK1, SLC16A4, CD53, LRIG2) 0.451603270671053 107 0.0602233235875627 0.974200119925224 4839 0.254400202423009 4 2 2 -6.86133685364712 LTS-024 NA NA NA NA LTS-024 chr1 115604960 115615455 10496 * TSPAN2 NA 0 NA 1.256 1 NA NA NA NA NA LTS-024 chr1 115615456 116605586 990131 * c(TSPAN2, NGF, NHLH2, SLC22A15, VANGL1, CASQ2) 0.441489554840328 32 0.0859822749926008 1.12252435800751 547 0.482582943162548 4 2 2 -6.75930901245213 LTS-024 chr1 116605587 116606989 1403 * SLC22A15 NA 0 NA 0.97 1 NA NA NA NA NA LTS-024 chr1 116606990 117142736 535747 * c(MAB21L3, IGSF3, ATP1A1, SLC22A15, ATP1A1-AS1, CD58) 0.420496896762721 6 0.0421710801379334 1.02215211423581 484 0.246609171530687 4 2 2 -6.81197279036327 LTS-024 chr1 117142737 117142855 119 * IGSF3 0.36 1 NA 0.976866825715225 3 0.160221721373851 4 4 0 -5.76441507715847 LTS-024 chr1 117142856 117156459 13604 * IGSF3 0.284020302813631 9 0.0752314945868934 1.06088133319185 35 0.395719283407448 8 6 2 -6.7473620560755 LTS-024 chr1 117156460 117156490 31 * IGSF3 0.38 1 NA 0.942861642224728 3 0.0591382560897202 4 4 0 -5.76444125808343 LTS-024 chr1 117156491 120536047 3379557 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, NBPF7, NOTCH2, HAO2, GDAP2, FAM46C, PTGFRN, LINC00622, TBX15, VTCN1, TRIM45, REG4, TTF2, ZNF697, CD2, CD101) 0.426888125091058 43 0.102115930904083 1.00849740999313 2588 0.445475874407084 4 2 2 -6.73880794544136 LTS-024 chr1 120536048 120539331 3284 * NOTCH2 0.301 1 NA 1.09710009926471 77 2.12087228770748 4 4 0 -5.76441251602566 LTS-024 chr1 120539332 121116733 577402 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.271908279628503 14 0.0569445942402509 0.926128012260807 93 0.219231254959244 4 3 1 -7.08742166759335 LTS-024 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.944738002822391 59 0.204309239492259 4 NA NA -5.78061014094769 LTS-024 chr1 143912360 144013853 101494 * FAM72D 0.226 1 NA 0.225407909042139 13 0.495232877103391 0 0 0 -5.76813242043892 LTS-024 chr1 144013854 144677062 663209 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.232 1 NA 0.690263041883653 30 0.312414262261453 2 2 0 -5.79064485147107 LTS-024 chr1 144677063 144679884 2822 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.726 1 NA NA NA NA NA LTS-024 chr1 144679885 145697364 1017480 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, NOTCH2NL, LOC653513, POLR3GL, ITGA10, PEX11B, SEC22B, PDE4DIP, RBM8A) 0.375276215593519 91 0.0921812595671409 0.973007784456586 1838 0.36144577750395 3 2 1 -6.85602977635957 LTS-024 chr1 145697365 149876124 4178760 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR5087, CD160, NBPF12, PDIA3P1, FCGR1A, FMO5, NBPF14, GJA5, GJA8, NBPF15, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, HIST2H2BF, BOLA1, ACP6, GPR89B, PDZK1, PRKAB2, LINC00869, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, HIST2H2AC, HIST2H2BE, CHD1L, SV2A) 0.359297904477456 36 0.135501806934593 1.02312571634946 1140 0.407085330681932 4 3 1 -6.80426013542723 LTS-024 chr1 149876125 149885583 9459 * SV2A 0.453 1 NA 1.17361794294503 89 0.282727020156291 5 5 0 -5.76447698763792 LTS-024 chr1 149885584 151955753 2070170 * c(LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, LINGO4, LYSMD1, ARNT, MCL1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, MRPL9, MIR554, NA NA NA NA NA NA NA NA NA LTS-024 VPS72, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.438319585719162 79 0.0793138212799258 1.04109923891722 5049 0.660520572685812 4 2 2 -6.73488997577419 LTS-024 NA NA NA NA LTS-024 chr1 151955754 152057002 101249 * c(TCHHL1, S100A10, S100A11) 0.397 1 NA 1.06753383372398 35 0.604734127287259 4 4 0 -5.76476810911693 LTS-024 chr1 152057003 152760557 703555 * c(C1orf68, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, CRCT1, TCHH, LCE3D) 0.406875087070906 11 0.19177643233724 1.08613279218685 910 0.437699250388097 4 2 2 -6.75565888190991 LTS-024 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.493 1 NA NA NA NA NA LTS-024 chr1 152760642 152777473 16832 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.14938535022647 39 1.03207939611836 10 NA NA -5.76441067048191 LTS-024 chr1 152777474 152777490 17 * LCE1C NA 0 NA 1.239 1 NA NA NA NA NA LTS-024 chr1 152777491 153234722 457232 * c(LELP1, SPRR4, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PRR9, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.398032026257908 20 0.140992944952277 1.08583850647085 320 0.505723607093005 5 3 2 -6.75255740461201 LTS-024 chr1 153234723 153509892 275170 * c(PGLYRP3, S100A7A, PGLYRP4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2) 0.403 1 NA 1.04013411490297 285 0.241677676427551 4 4 0 -5.76558875542969 LTS-024 chr1 153509893 157069154 3559262 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, ILF2, NA NA NA NA NA NA NA NA NA LTS-024 INSRR, PEAR1, KCNN3, C1orf189, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, INTS3, SSR2, SCARNA4, SNORA80E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.454907741577734 126 0.0605923710426604 1.01228011988418 9688 0.304451921160811 4 2 2 -6.79260183927866 LTS-024 NA NA NA NA LTS-024 chr1 157069155 157483440 414286 * c(ETV3, CYCSP52, ETV3L, FCRL5) 0.436 1 NA 1.02619154900126 145 0.276412913336197 4 4 0 -5.76456621184401 LTS-024 chr1 157483441 160516049 3032609 * c(CADM3-AS1, LINC01133, SLAMF6, FCRL1, FCRL3, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, PYHIN1, FCER1A, NCSTN, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, MNDA, OR10J3, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, DUSP23, KIRREL, SLAMF8, VANGL2, IGSF9, CADM3, PEX19, LOC646268, SPTA1, FCRL2, OR6N2, OR6K2, FCRL5, NA NA NA NA NA NA NA NA NA LTS-024 FCRL4, TAGLN2, CASQ1, PEA15, CD84, SLAMF9, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, PIGM, IGSF8, AIM2) 0.44726868947119 119 0.0674529962896096 1.05037752701652 4596 0.333697999070963 4 2 2 -6.76494239372926 LTS-024 NA NA NA NA LTS-024 chr1 160516050 160516151 102 * CD84 0 1 NA 1.7974914990067 3 2.80933734772692 8 8 0 -5.76441013512441 LTS-024 chr1 160516152 160681661 165510 * c(SLAMF1, CD84, CD48) 0.417326239015834 6 0.0561569229926284 1.12436886194978 266 0.38401961139747 5 3 2 -6.73989510266425 LTS-024 chr1 160681662 161042063 360402 * c(TSTD1, ITLN2, ARHGAP30, LY9, F11R, CD244, ITLN1, SLAMF7, USF1, NECTIN4) 0.324703716591884 18 0.12384525448649 1.31002546457929 658 0.457285867526935 7 5 2 -6.77307833194172 LTS-024 chr1 161042064 161049358 7295 * NECTIN4 0.403 1 NA 1.38385939482746 49 0.252144833393038 6 6 0 -5.76442089972436 LTS-024 chr1 161049359 161332632 283274 * c(MIR5187, KLHDC9, FCER1G, USP21, APOA2, MPZ, NDUFS2, NIT1, UFC1, PFDN2, PPOX, SDHC, PCP4L1, NECTIN4, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.38876752078114 20 0.0931370665089616 1.29301887584999 937 0.311893316021897 5 3 2 -6.78171389811494 LTS-024 chr1 161332633 161332900 268 * SDHC NA 0 NA 0.885 1 NA NA NA NA NA LTS-024 chr1 161332901 161519828 186928 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, SDHC) 0.376671921626454 9 0.0851397543911056 0.993046098603762 218 0.269876263120118 3 2 1 -6.78633609791117 LTS-024 chr1 161519829 161559308 39480 * c(FCGR3A, FCGR2C) NA 0 NA 0.596 1 NA NA NA NA NA LTS-024 chr1 161559309 161570729 11421 * FCGR2C 0.443209688733791 5 0.0415295075819591 0.677308484954218 67 0.386371732641912 2 1 1 -6.75178398456389 LTS-024 chr1 161570730 161570732 3 * FCGR2C 0.271 1 NA 2.27 1 NA NA NA NA NA LTS-024 chr1 161570733 165377631 3806899 * c(LOC100505795, MIR4654, DUSP12, SH2D1B, UHMK1, FCRLB, FCGR2B, FCGR3B, ATF6, OLFML2B, C1orf111, HSPA7, CCDC190, C1orf226, LMX1A, DDR2, PBX1, HSD17B7, RGS4, RXRG, RPL31P11, UAP1, MIR556, NUF2, FCRLA, RGS5, FCGR2C, NOS1AP) 0.40752961904113 45 0.14944676765871 1.05529779085632 2065 0.35482355753582 4 2 2 -6.77657026525091 LTS-024 chr1 165377632 165378759 1128 * RXRG NA 0 NA 0.745 1 NA NA NA NA NA LTS-024 chr1 165378760 172279938 6901179 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505918, DNM3OS, MIR1295B, GPA33, SLC19A2, FMO9P, TADA1, METTL11B, FAM78B, DPT, F5, ALDH9A1, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TIPRL, LINC01142, NME7, SFT2D2, ILDR2, FMO6P, LOC400794, MGST3, LRRC52, LOC440700, MYOC, ATP1B1, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RXRG, XCL1, NA NA NA NA NA NA NA NA NA LTS-024 SELE, SELL, SELP, XCL2, MIR557, TOP1P1, UCK2, LINC00626, MROH9, ANKRD36BP1, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB) 0.440850253038383 103 0.0860802013592992 0.986880947772457 4902 0.280147702129298 4 2 2 -6.78901122708078 LTS-024 NA NA NA NA LTS-024 chr1 172279939 173454715 1174777 * c(LOC100506023, DNM3, FASLG, SUCO, PIGC, TNFSF4, TNFSF18, C1orf105, PRDX6) 0.347930322213838 21 0.124439390486943 1.2117705143529 682 0.307424037732581 5 3 2 -6.89376850740681 LTS-024 chr1 173454716 173455345 630 * PRDX6 NA 0 NA 0.837 1 NA NA NA NA NA LTS-024 chr1 173455346 174721554 1266209 * c(GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, KLHL20, SLC9C2, ANKRD45, SERPINC1, DARS2, GAS5, SNORD74, SNORD75, SNORD76, SNORD77, SNORD78, LOC730159, ZBTB37, CENPL, GPR52, PRDX6, RABGAP1L) 0.469462283426766 18 0.0229155882099181 0.899388861306241 1007 0.219398411353412 4 2 2 -8.04139459552895 LTS-024 chr1 174721555 174769136 47582 * RABGAP1L NA 0 NA 1.599 1 NA NA NA NA NA LTS-024 chr1 174769137 176176426 1407290 * c(CACYBP, TNN, MRPS14, RFWD2, SCARNA3, TNR, KIAA0040, RABGAP1L) 0.355312654603023 19 0.050682072911631 1.22737894881194 757 0.599649001791296 6 4 2 -6.78682172458857 LTS-024 chr1 176176427 176176495 69 * character(0) 0.397 1 NA 0.433 1 NA NA NA NA NA LTS-024 chr1 176176496 179064142 2887647 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TOR3A, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, FAM20B) 0.44785732566734 30 0.0902123930625331 1.06353295075839 1570 0.472439443087987 4 2 2 -6.75766897433364 LTS-024 chr1 179064143 180080359 1016217 * c(AXDND1, FAM163A, TDRD5, TOR1AIP2, TOR1AIP1, ABL2, TOR3A, SOAT1, NPHS2, CEP350) 0.454486186915872 28 0.0307631977958134 0.98050730334948 1321 0.254632725830081 4 2 2 -6.95862314213675 LTS-024 chr1 180080360 180148012 67653 * c(QSOX1, CEP350) 0.388596309259386 2 0.0120208152801713 1.35461286233478 100 0.401789921991756 8 5 3 -6.76076912087086 LTS-024 chr1 180148013 180163390 15378 * QSOX1 0.326 1 NA 1.59661571331266 29 0.374453003358416 7 7 0 -5.76441060412125 LTS-024 chr1 180163391 180217603 54213 * c(FLJ23867, QSOX1, LHX4) 0.291633999006879 10 0.0342870237845165 1.73624831215723 189 0.571597118471456 8 6 2 -6.75097269764743 LTS-024 chr1 180217604 180235522 17919 * LHX4 NA 0 NA 2.092 1 NA NA NA NA NA LTS-024 chr1 180235523 180859368 623846 * c(MIR3121, LHX4-AS1, ACBD6, LHX4, XPR1) 0.248949144800407 6 0.0370589620289973 2.02071653856934 392 0.50905826563131 9 7 2 -6.77006247597691 LTS-024 chr1 180859369 180859413 45 * XPR1 NA 0 NA 1.76323866650941 2 0.352846283812087 8 NA NA -5.7644101621682 LTS-024 chr1 180859414 180905448 46035 * c(KIAA1614, XPR1) 0.428 1 NA 1.31290933644648 65 0.179574941501827 6 6 0 -5.76804192201257 LTS-024 chr1 180905449 181003175 97727 * c(STX6, MR1, KIAA1614) 0.373287478490637 14 0.0367444396630816 1.34224677645081 302 0.329917082182671 6 4 2 -6.78309499524886 LTS-024 chr1 181003176 182836094 1832919 * c(GM140, ZNF648, TEDDM1, DHX9, GLUL, LOC284648, MR1, RGSL1, LINC00272, IER5, RGS16, RNASEL, CACNA1E, NPL, RGS8) 0.436734225780145 34 0.0847465972163511 1.02252177590014 1413 0.401604442659562 4 2 2 -6.73316549686188 LTS-024 chr1 182836095 182841588 5494 * DHX9 NA 0 NA 1.29 1 NA NA NA NA NA LTS-024 chr1 182841589 183099560 257972 * c(DHX9, LAMC1, SHCBP1L) 0.394266452685112 2 0.0304055915910215 1.33425358750726 250 0.307725962270689 8 5 3 -6.87910102577211 LTS-024 chr1 183099561 183113579 14019 * LAMC1 0.369 1 NA 1.36436740917048 79 0.278568127901427 6 6 0 -5.76448734826543 LTS-024 chr1 183113580 183933498 819919 * c(ARPC5, NMNAT2, COLGALT2, RGL1, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, SMG7) 0.334333290807086 51 0.0800427434831773 1.41192089584307 1051 0.419581138131461 7 5 2 -6.79271393973655 LTS-024 chr1 183933499 184476886 543388 * c(TSEN15, COLGALT2, C1orf21) NA 0 NA 1.35725501436038 117 0.233151564921125 6 NA NA -5.7705139078973 LTS-024 chr1 184476887 184537548 60662 * C1orf21 NA 0 NA 1.105 1 NA NA NA NA NA LTS-024 chr1 184537549 184567463 29915 * C1orf21 0.482 1 NA 1.00224472790441 9 0.502724079391469 4 4 0 -5.76442990702821 LTS-024 chr1 184567464 186055569 1488106 * c(GS1-279B7.1, MIR548F1, IVNS1ABP, FAM129A, SWT1, RNF2, EDEM3, C1orf21, TRMT1L, HMCN1) 0.472140769381683 12 0.0221118026895551 0.977044519799116 1278 0.214640374179792 4 2 2 -8.0578266809809 LTS-024 chr1 186055570 186056353 784 * c(MIR548F1, HMCN1) NA 0 NA 1.233 1 NA NA NA NA NA LTS-024 chr1 186056354 186957917 901564 * c(MIR548F1, RNU6-72P, PRG4, OCLM, PDC, PLA2G4A, C1orf27, PTGS2, TPR, HMCN1) 0.386904761036389 15 0.117426248383927 1.24241816344343 978 0.448654137940511 5 3 2 -6.76484154970177 LTS-024 chr1 187610629 196716667 9106039 * c(MIR1278, MIR4735, CFHR4, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.445616309175862 19 0.0567667846214431 0.955098889084731 1026 0.246976266766146 4 2 2 -7.1056376399073 LTS-024 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.454 1 NA NA NA NA NA LTS-024 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) 0 1 NA 0.424827067742769 118 0.464364560863621 1 1 0 -5.76478362775762 LTS-024 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 0.929 1 NA NA NA NA NA LTS-024 chr1 196857130 200828562 3971433 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5, DDX59, KIF14) 0.436830853270588 52 0.0989152630332404 0.978238345783249 2346 0.317538956250162 4 2 2 -6.77241514411917 LTS-024 chr1 200828563 202288003 1459441 * c(MIR1231, MIR5191, TIMM17A, ARL8A, CSRP1, PTPRVP, SHISA4, ELF3, KIF21B, CAMSAP2, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, PTPN7, LGR6, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1, GPR37L1) 0.454218381464148 39 0.0829387690179196 1.08562447514499 2721 0.328859143570891 4 2 2 -6.79438395128094 LTS-024 chr1 202288004 203317141 1029138 * c(PCAT6, KDM5B, CHI3L1, CHIT1, SYT2, ADORA1, LOC148709, FMOD, UBE2T, NA, MYBPH, MYOG, PPP1R12B, ADIPOR1, CYB5R1, RABIF, KLHL12, LGR6, MGAT4EP, LINC01136, BTG2, PPFIA4, TMEM183A) 0.450039455391688 45 0.0389091534503415 1.00905300721868 1821 0.263936371171592 4 2 2 -6.81221549281438 LTS-024 chr1 203317142 203317162 21 * FMOD 0.495 1 NA 0.447 1 NA NA NA NA NA LTS-024 chr1 203317163 203456098 138936 * c(FMOD, PRELP) 0.377 2 0.0700035713374682 0.766883517805297 36 0.214769791851795 3 2 1 -6.74743616871678 LTS-024 chr1 203456099 203456221 123 * PRELP 0.329 1 NA 0.56255037826213 3 0.343332200645381 2 2 0 -5.76441971358785 LTS-024 chr1 203456222 205501916 2045695 * c(ZBED6, LRRN2, LINC00628, GOLT1A, PLEKHA6, NFASC, DSTYK, OPTC, LINC00303, LEMD1-AS1, KISS1, TMEM81, MDM4, MIR135B, ATP2B4, CDK18, PIK3C2B, LAX1, KLHDC8A, ETNK2, PRELP, RBBP5, REN, SNRPE, SNORA77, CNTN2, NUAK2, LINC00260, PPP1R15B, LEMD1, SOX13, ZC3H11A, TMCC2) 0.277662221157026 71 0.0836880597701281 0.735669201274433 3037 0.204340249550096 2 2 0 -7.76500644660191 LTS-024 chr1 205501917 205688787 186871 * c(MFSD4A, ELK4, LOC284578, CDK18, NUCKS1, SLC45A3) 0.168656777815854 11 0.0307742513386523 1.1034823390744 526 0.282527367200868 3 3 0 -6.98192909297954 LTS-024 chr1 205688788 231114465 25425678 * c(NA, MIR320B2, MIR4260, MIR3122, MIR3620, MIR4666A, MIR4742, MIR5008, LINC00538, LINC00210, BPNT1, CENPF, LEFTY1, SPHAR, CAPN9, IL24, DUSP10, SLC26A9, SNAP47, CCSAP, LYPLAL1, DNAH14, SPATA17, MRPL55, HIST3H2BB, TATDN3, CR1, CR1L, CR2, PARP1, C1orf74, BROX, LOC148696, PM20D1, CNIH3, RNF187, SPATA45, FAM71A, CTSE, CD55, SDE2, CCDC185, AGT, EIF2D, IBA57, EPHX1, EPRS, ESRRG, COG2, FBXO28, SRGAP2, ABCB10, NA NA NA NA NA NA NA NA NA LTS-024 SLC41A1, SYT14, RAB3GAP2, INTS7, GALNT2, NSL1, RPS6KC1, RNU5F-1, DIEXF, TAF5L, LOC284581, LIN9, FLVCR1, CNIH4, GUK1, PYCR2, NENF, IL19, H3F3A, HLX, HSD11B1, ZNF678, PRSS38, RD3, IL10, IRF6, ITPKB, ARF1, MIA3, STUM, KCNH1, KCNK2, CAPN8, LAMB3, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR205, MIR215, MIR29C, MARK1, CD46, C1orf186, H3F3AP4, ATF3, NEK2, NVL, G0S2, IL20, RRP15, TRIM17, KCTD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 DTL, PFKFB2, PIGR, PLXNA2, MARC2, SUSD4, GPATCH2, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, SLC30A10, IARS2, HHAT, ENAH, NUP133, RCOR3, SERTAD4, PROX1, PSEN2, SMYD2, COQ8A, GJC2, CAMK1G, DUSP5P1, SERTAD4-AS1, C1orf145, PTPN14, ACTA1, RHOU, RAB4A, MIR205HG, FLVCR1-AS1, LYPLAL1-AS1, NUCKS1, ACBD3, MARC1, AIDA, JMJD4, SRGAP2C, SRP9, SNORA36B, AURKAPS1, SNORA16B, TGFB2, LEFTY2, TLR5, TP53BP2, TRAF5, C4BPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 C4BPB, TGFB2-AS1, FAM72A, USH2A, WNT9A, SLC30A1, C1orf116, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, VASH2, WDR26, TRAF3IP3, TRIM11, CAPN2, HIST3H3, RASSF5, MIXL1, FCAMR, OBSCN, DYRK3, CDC42BPA, LINC00467, C1orf198, DISP1, DEGS1, RAB29, WNT3A, TAF1A, ANGEL2, FCMR, MAPKAPK2, HIST3H2A, CD34, IKBKE, TMEM63A, URB2, LPGAT1) 0.275618399765154 322 0.0728897269752304 0.715315044375076 17606 0.194877912221594 2 2 0 -10.4095865497441 LTS-024 NA NA NA NA LTS-024 chr1 231114466 231133097 18632 * c(ARV1, TTC13) NA 0 NA 0.71601625742234 35 0.159523186586852 2 NA NA -5.77041977876321 LTS-024 chr1 231133098 231154771 21674 * c(FAM89A, ARV1) NA 0 NA 1.251 1 NA NA NA NA NA LTS-024 chr1 231154772 231158644 3873 * c(MIR1182, FAM89A) 0.12 1 NA 1.21638007380292 31 0.354541739660213 5 5 0 -5.76441061556537 LTS-024 chr1 231158645 232942998 1784354 * c(LINC00582, TSNAX-DISC1, C1orf131, EXOC8, LOC149373, DISC2, DISC1, FAM89A, TRIM67, EGLN1, MAP10, SIPA1L2, SNRPD2P2, TSNAX, SPRTN, GNPAT) 0.158956354053652 32 0.053654810685319 1.12081853304751 1324 0.356989341762869 4 4 0 -7.0388237363967 LTS-024 chr1 232942999 233363170 420172 * c(MAP10, PCNX2, NTPCR) 0.142485829747319 11 0.0277410100097966 1.37441607545543 362 0.380262389886846 10 9 1 -7.08989310533815 LTS-024 chr1 233363171 233372616 9446 * PCNX2 NA 0 NA 1.831 1 NA NA NA NA NA LTS-024 chr1 233372617 233519224 146608 * c(PCNX2, MLK4) 0.110899148653703 10 0.0323378003787106 1.75820373710532 234 0.550424805016123 5 5 0 -6.79120632348804 LTS-024 chr1 233519225 233519277 53 * MLK4 NA 0 NA 0.785 1 NA NA NA NA NA LTS-024 chr1 233519278 238054193 4534916 * c(LOC100130331, LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, MTR, NID1, ARID4B, HEATR1, ERO1B, ZP4, RYR2, MT1HL1, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.130108196915691 39 0.0440196404453656 1.33338803336037 3435 0.379771590875693 5 5 0 -7.09007011011777 LTS-024 chr1 240070696 248550993 8480298 * c(AKT3, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2L13, OR14A16, NA, HNRNPU, LOC339529, OR6F1, OR2W3, OR2T8, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, NA NA NA NA NA NA NA NA NA LTS-024 OR2T33, OR2M7, MAP1LC3C, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, RGS7, TFB2M, GREM2, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, EXO1, ZNF670, CEP170) 0.18130882365273 91 0.0464360918113338 1.10057332727898 4715 0.543180428971336 4 4 0 -7.60588896224766 LTS-024 NA NA NA NA LTS-024 chr1 248550994 248569282 18289 * OR2T6 0.247 1 NA 1.35896338466987 19 0.559352732658171 6 6 0 -5.76444310132099 LTS-024 chr1 248569283 248637020 67738 * c(OR2T1, OR2T3, OR2T2) 0.388827038977337 8 0.0806702945858724 1.20316352064411 93 0.726717585316232 8 5 3 -6.74506589076446 LTS-024 chr1 248637021 248637046 26 * OR2T3 0.141 1 NA 4.019 1 NA NA NA NA NA LTS-024 chr1 248637047 248651953 14907 * c(OR2T3, OR2T5) 0.264576970758491 3 0.186923335443527 0.547234106345589 48 0.895664023254921 5 4 1 -6.74007759445243 LTS-024 chr1 248651954 248651959 6 * OR2T5 0.085 1 NA 2.892 1 NA NA NA NA NA LTS-024 chr1 248651960 248813546 161587 * c(OR2T34, OR2T10, OR2T11, OR2T29, OR2G6, OR2T5, OR2T27, OR2T35) 0.25900122481096 12 0.16307936346417 1.37587390428588 153 1.31360872609652 5 4 1 -6.73434801454062 LTS-024 chr1 248813547 248813597 51 * OR2T27 NA 0 NA 0.844 1 NA NA NA NA NA LTS-024 chr1 248813598 249120531 306934 * c(OR14I1, OR2T27, LYPD8, SH3BP5L) 0.253425503739558 3 0.149687452157264 1.02281110869394 139 0.316649456040327 5 4 1 -6.78710692450992 LTS-024 chr1 249120532 249214134 93603 * c(MIR3124, PGBD2, ZNF692, ZNF672) NA 0 NA 0.97869359720773 207 0.19943911055744 4 NA NA -5.76672113735491 LTS-024 chr2 38824 1168781 1129958 * c(TMEM18, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2, FAM110C) 0.47 1 NA 1.23402777303164 384 0.245831002283685 5 5 0 -5.76867524588237 LTS-024 chr2 1168782 7540695 6371914 * c(LINC01304, RNASEH1-AS1, CMPK2, LINC01105, MYT1L, RNASEH1, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, SNTG2, ADI1, ALLC, RPS7, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, RSAD2, RNF144A) 0.350627469594897 58 0.12175410965709 1.31772664339997 1801 0.356737754474254 6 4 2 -6.85039099920604 LTS-024 chr2 7540696 7540737 42 * character(0) NA 0 NA 1.296 1 NA NA NA NA NA LTS-024 chr2 7540738 7594500 53763 * LOC100506274 NA 0 NA 1.12 1 NA NA NA NA NA LTS-024 chr2 7594501 8178798 584298 * c(LINC00298, LINC00299) 0.496 1 NA 1.02249130232736 7 0.217855347377457 4 4 0 -5.7644912628623 LTS-024 chr2 8178799 11054402 2875604 * c(SNORA80B, MIR4261, PDIA6, YWHAQ, MBOAT2, CYS1, ATP6V1C2, IAH1, GRHL1, HPCAL1, LINC00299, ID2, C2orf48, KCNF1, ODC1, CPSF3, KIDINS220, RRM2, ADAM17, NOL10, KLF11, ASAP2, TAF1B, ITGB1BP1) 0.453168397420082 58 0.0655325985758542 0.98327895094596 2081 0.250613892371636 4 2 2 -6.80943634054488 LTS-024 chr2 11054403 11245722 191320 * FLJ33534 NA 0 NA 1.605 1 NA NA NA NA NA LTS-024 chr2 11245723 11389913 144191 * c(C2orf50, PQLC3, FLJ33534, ROCK2) 0.38123931148649 6 0.032335738742141 1.34782132772049 351 0.352325910514948 8 5 3 -6.83143283349335 LTS-024 chr2 11389914 11426553 36640 * ROCK2 NA 0 NA 1.014 1 NA NA NA NA NA LTS-024 chr2 11426554 20451474 9024921 * c(MIR3125, MIR4262, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, MYCNOS, OSR1, TTC32, FAM84A, DDX1, E2F6, LPIN1, PUM2, NTSR2, TRIB2, MSGN1, GEN1, KCNS3, LINC00954, MATN3, MYCN, NBAS, WDR35, RDH14, SDC1, RAD51AP2, VSNL1, SMC6, FAM49A, NT5C1B, ROCK2, GREB1, LAPTM4A) 0.444883065109126 57 0.0735815745978621 1.02666530613774 2648 0.271141549800705 4 2 2 -6.74599625666148 LTS-024 chr2 20451475 20453517 2043 * PUM2 NA 0 NA 1.63 1 NA NA NA NA NA LTS-024 chr2 20453518 20988953 535436 * c(GDF7, PUM2, RHOB, LDAH, HS1BP3) 0.370492635065008 29 0.0383443690832707 1.3592646089176 565 0.336779770289158 6 4 2 -6.760102028266 LTS-024 chr2 20988954 26532831 5543878 * c(MIR1301, RAB10, ADCY3, KLHL29, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, HADHA, HADHB, APOB, PFN4, FAM228B, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, LDAH, LOC645949, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3) 0.458806573374343 31 0.0602089908622056 1.00354401374272 3489 0.226389456425524 4 2 2 -6.8340486220197 LTS-024 chr2 26532832 26653457 120626 * c(ADGRF3, SELENOI, DRC1) 0.420173969268947 9 0.157351517310765 1.0894705404066 323 0.313800647228747 4 2 2 -6.74228360494325 LTS-024 chr2 26653458 26679591 26134 * DRC1 0 1 NA 1.0173474582356 69 0.453532950572394 4 4 0 -5.76441036261427 LTS-024 chr2 26679592 27165048 485457 * c(CENPA, CIB4, C2orf70, KCNK3, SLC35F6, DPYSL5, OTOF) 0.421685231959918 10 0.147802270317851 1.08870953497185 617 0.243378586072013 4 2 2 -6.75995264066669 LTS-024 chr2 27165049 27165406 358 * DPYSL5 NA 0 NA 1.908 1 NA NA NA NA NA LTS-024 chr2 27165407 27173255 7849 * DPYSL5 0.288341512871254 3 0.0466082968293558 1.89786493367044 84 0.357548513051464 8 6 2 -6.73508747673414 LTS-024 chr2 27173256 27244982 71727 * MAPRE3 NA 0 NA 0.911 1 NA NA NA NA NA LTS-024 chr2 27244983 27898601 653619 * c(OST4, GTF3C2-AS1, PREB, CGREF1, EMILIN1, GPN1, ZNF513, TCF23, KRTCAP3, MAPRE3, SLC4A1AP, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, PRR30, KHK, MPV17, ATRAID, TMEM214, PPM1G, TRIM54, AGBL5, FNDC4, UCN, SLC30A3, CAD, CCDC121, C2orf16, ZNF512, ABHD1, SLC5A6, EIF2B4, SNX17, SUPT7L) 0.350367795610341 32 0.0288823915270633 1.38851824151976 2843 0.298980849649652 6 4 2 -6.84146260185101 LTS-024 chr2 27898602 27900114 1513 * SLC4A1AP NA 0 NA 0.805 1 NA NA NA NA NA LTS-024 chr2 27900115 27928797 28683 * SLC4A1AP 0.326925920443206 2 0.0756604255869606 1.19305290772334 64 0.308352946609141 7 5 2 -6.75329686415852 LTS-024 chr2 27928798 27929023 226 * character(0) 0.484 1 NA 0.921412912046995 5 0.184109478300277 4 4 0 -5.76445058146917 LTS-024 chr2 27929024 30144419 2215396 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, FAM179A, WDR43, FOSL2, ALK, SPDYA, SNORD53, C2orf71, PPP1CB, TRMT61B, RBKS, SNORD92, CLIP4, MRPL33, BRE) 0.45557450940702 15 0.0309258714316917 1.00995453668242 1690 0.205481348065296 4 2 2 -6.96932717709961 LTS-024 chr2 30144420 30379408 234989 * c(ALK, YPEL5) NA 0 NA 1.383 1 NA NA NA NA NA LTS-024 chr2 30379409 31133997 754589 * c(LCLAT1, YPEL5, GALNT14, LBH, CAPN13) 0.382097771224475 8 0.0447947701028974 1.32592190287059 394 0.376821214764806 6 4 2 -6.85280136645431 LTS-024 chr2 31133998 36778175 5644178 * c(LOC100271832, LOC100288911, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30) 0.461307824601752 44 0.0307184840815854 1.01210290545908 2385 0.256617777270431 4 2 2 -7.12047540495695 LTS-024 chr2 36778176 43451494 6673319 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, HAAO, PRKD3, GPATCH11, QPCT, EML4, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, MTA3, ATL2, SRSF7, SLC8A1, SOS1, ZFP36L2, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L, HNRNPLL, FEZ2) 0.440588959104695 64 0.100975862224514 0.952176119986923 4034 0.237067100741907 4 2 2 -7.04631640623303 LTS-024 chr2 43451495 43460046 8552 * c(LINC01126, THADA, ZFP36L2) 0.190760307710339 3 0.0321299444962691 0.592334234663209 63 0.113987167017834 2 2 0 -6.78468120781872 LTS-024 chr2 43460047 53897853 10437807 * c(LINC01119, MIR548AD, LRPPRC, SIX2, GTF2A1L, STON1, PPP1R21, PLEKHH2, EPAS1, RHOQ, FSHR, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LHCGR, LINC01121, EPCAM, MSH2, ASB3, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, NRXN1, CRIPT, PREPL, SOCS5) 0.461740993443842 84 0.0611346528830624 1.01167469130699 4283 0.730257875720364 4 2 2 -6.83906771081879 LTS-024 chr2 53897854 53920980 23127 * ASB3 NA 0 NA 1.236 1 NA NA NA NA NA LTS-024 chr2 53920981 55106859 1185879 * c(MIR3682, GPR75, C2orf73, PSME4, ERLEC1, TSPYL6, EML6, CHAC2, ASB3, RPL23AP32, SPTBN1, ACYP2) 0.388353223431497 19 0.102013386347832 1.22789877057979 1010 0.319779104362751 5 3 2 -6.76990628736987 LTS-024 chr2 55106860 55118188 11329 * EML6 NA 0 NA 0.926 1 NA NA NA NA NA LTS-024 chr2 55118189 56570174 1451986 * c(MIR216B, CFAP36, CCDC85A, CLHC1, EFEMP1, PRORSD1P, EML6, MIR216A, MIR217, MTIF2, CCDC88A, RTN4, PPP4R3B, RPS27A, PNPT1) 0.451215989793038 30 0.0407623333003884 0.971874171845571 1242 0.252719585270913 4 2 2 -6.84723518833275 LTS-024 chr2 56570175 56599447 29273 * CCDC85A NA 0 NA 1.344 1 NA NA NA NA NA LTS-024 chr2 56599448 60687436 4087989 * c(MIR4432, CCDC85A, LINC01122, BCL11A, FANCL, VRK2) 0.462521751060519 4 0.0160286202358989 1.19846906951167 303 0.329916086470606 6 3 3 -8.55756073018587 LTS-024 chr2 60687437 60687555 119 * BCL11A NA 0 NA 1.032 1 NA NA NA NA NA LTS-024 chr2 60687556 70781005 10093450 * c(SNORA36C, SNORA70B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, LINC01185, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PEX13, BCL11A, NA NA NA NA NA NA NA NA NA LTS-024 PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, REL, GMCL1, LOC644838, PAPOLG, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, KIAA1841, FAM136A, USP34, SERTAD2, ARHGAP25) 0.431360068928321 84 0.106677891558336 0.960815214024746 5885 0.296070162442043 4 2 2 -6.96470737367919 LTS-024 NA NA NA NA LTS-024 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.292 1 NA NA NA NA NA LTS-024 chr2 70781031 75745081 4964051 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, MPHOSPH10, SMYD5, SEMA4F, CCT7, STAMBP, MTHFD2, TEX261, MRPL53, ADD2, M1AP, FBXO41, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, EMX1, EXOC6B, WBP1, VAX2, RAB11FIP5, ZNF638, HTRA2, HK2, TLX2, FIGLA, NOTO, C2orf78, BOLA3, C2orf81, PAIP2B, CD207, TPRKB, ATP6V1B1, AUP1, MOB1A, NAGK, CYP26B1, POLE4, SLC4A5, RTKN, TTC31, SPR, TACR1, TGFA, NA NA NA NA NA NA NA NA NA LTS-024 ACTG2, ALMS1, MOGS, OR7E91P, ANKRD53, DYSF, INO80B, WDR54, EVA1A, PRADC1, DUSP11, MCEE, LOXL3, PCGF1, CCDC142, LBX2, NAT8, SFXN5) 0.450307129589336 84 0.0793952255234223 1.01210735164074 5776 0.25704682188648 4 2 2 -6.75489010171254 LTS-024 NA NA NA NA LTS-024 chr2 75745082 76975080 1229999 * c(GCFC2, LRRTM4, EVA1A, MRPL19) 0 1 NA 1.04147830534552 213 0.286626253854265 4 4 0 -5.7686423004372 LTS-024 chr2 76975081 79350505 2375425 * c(SNAR-H, REG3G, REG1A, REG1B, LRRTM4) 0.360597219214491 9 0.188325811059215 1.0923644963983 207 0.540331813772103 4 3 1 -6.79548859519509 LTS-024 chr2 79350506 79385913 35408 * c(REG3A, REG1A, REG1CP) 0.474 1 NA 1.07782853778931 21 0.362694775258757 4 4 0 -5.76491690759489 LTS-024 chr2 79385914 84897542 5511629 * c(MIR4264, CTNNA2, DHFRP3, DNAH6, LRRTM1, FUNDC2P2, REG3A, SUCLG1) 0.463500279224268 4 0.0313515018247399 1.01942734382745 466 0.243708162343067 4 2 2 -7.16563367491252 LTS-024 chr2 84897543 85059357 161815 * c(TRABD2A, DNAH6) 0.424 1 NA 1.32213426340137 232 0.241042239241738 6 6 0 -5.7700522197341 LTS-024 chr2 85059358 85064945 5588 * TRABD2A NA 0 NA 0.826 1 NA NA NA NA NA LTS-024 chr2 85064946 87085504 2020559 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.456759158059382 49 0.0286118166920902 0.996592376492649 2655 0.223854172474571 4 2 2 -7.0484185275273 LTS-024 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.801 1 NA NA NA NA NA LTS-024 chr2 87092741 87422019 329279 * c(ANAPC1P1, LOC285074, RMND5A) 0.465 1 NA 0.737597889257833 102 0.238199076282338 3 3 0 -5.81062048727935 LTS-024 chr2 87422020 87423610 1591 * RMND5A NA 0 NA 1.125 1 NA NA NA NA NA LTS-024 chr2 87423611 88326821 903211 * c(CYTOR, KRCC1, RMND5A) 0.470421741528121 3 0.0227156333832011 0.995143761157797 85 0.364710165805694 4 2 2 -7.87513041690168 LTS-024 chr2 88326822 88856388 529567 * c(MIR4780, SMYD1, TEX37, FABP1, FOXI3, KRCC1, THNSL2, EIF2AK3) 0.297 1 NA 1.06458974516446 341 0.217048885466102 4 4 0 -5.77724007155227 LTS-024 chr2 88856389 91955404 3099016 * c(MIR4436A, RPIA, ANKRD36BP2, LOC654342, EIF2AK3) 0.360930929874999 26 0.0784862163302968 1.03607323135497 590 0.822675988673595 3 2 1 -6.91323290222031 LTS-024 chr2 91955405 91955470 66 * character(0) NA 0 NA 1.5558242636116 3 0.214774300138541 7 NA NA -5.7644105900971 LTS-024 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.444 1 NA 2.153 1 NA NA NA NA NA LTS-024 chr2 95537246 97039568 1502323 * c(TRIM43, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, DUSP2, SNRNP200, NCAPH, STARD7-AS1, KCNIP3, MAL, ASTL, LOC442028, FAHD2A, TMEM127, STARD7, MRPS5, TRIM43B, FAHD2CP, ZNF2, ZNF514, CIAO1) 0.399213210330541 67 0.0971707268589641 1.05769672218698 1788 0.300535382700991 4 2 2 -6.83106802552357 LTS-024 chr2 97039569 97164036 124468 * c(NCAPH, NEURL3) NA 0 NA 1.5 1 NA NA NA NA NA LTS-024 chr2 97164037 97827800 663764 * c(MIR3127, ARID5A, FAHD2B, ANKRD23, CNNM4, CNNM3, ANKRD36, ANKRD39, FAM178B, SEMA4C, KANSL3, LMAN2L, FER1L5, NEURL3) 0.341084983713347 12 0.0608656618125424 1.37403903978384 1223 0.296945510653405 6 4 2 -6.8097491204443 LTS-024 chr2 97827801 97827839 39 * ANKRD36 0.436 1 NA 0.82 1 NA NA NA NA NA LTS-024 chr2 97827840 97928111 100272 * ANKRD36 0.305402183037496 4 0.0762299153875957 0.902864922759346 39 0.293589342031324 4 3 1 -6.74831641082934 LTS-024 chr2 97928112 98128186 200075 * c(ANKRD36, ANKRD36B) NA 0 NA 1.491 1 NA NA NA NA NA LTS-024 chr2 98128187 98611994 483808 * c(ACTR1B, COX5B, TMEM131, ANKRD36B, LINC01125, ZAP70) 0.355364816079099 8 0.0592765913806984 1.3027465309948 452 0.455885938496226 6 4 2 -6.74970983855357 LTS-024 chr2 98611995 98612266 272 * TMEM131 0.334 1 NA 0.980673945586899 5 0.291347215535004 4 4 0 -5.76441296564498 LTS-024 chr2 98612267 98914380 302114 * c(VWA3B, TMEM131) 0.166 1 NA 1.22699233752273 148 0.304074298613079 5 5 0 -5.76478279656983 LTS-024 chr2 98914381 99772074 857694 * c(MGAT4A, CNGA3, C2orf15, VWA3B, UNC50, KIAA1211L, INPP4A, COA5, MRPL30, LIPT1, TSGA10) 0.153365350548749 4 0.0358887168898527 0.985252723677661 897 0.229359008230316 3 3 0 -7.01515415901956 LTS-024 chr2 99772075 99778372 6298 * c(MRPL30, LIPT1) NA 0 NA 0.605 1 NA NA NA NA NA LTS-024 chr2 99778373 128784970 29006598 * c(RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4783, MIR4782, MIR5696, ACTR3, TXNDC9, MERTK, MAP3K2, EDAR, TBC1D8, RABL2A, GPR45, RPL23AP7, NMS, LYG1, MITD1, CNTNAP5, FBLN7, C2orf76, TMEM182, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, LINC01106, SEPT10, SULT1C2P1, DBI, LONRF2, CCDC138, C1QL2, FOXD4L1, CFAP221, CREG2, EN1, LINC00116, NA NA NA NA NA NA NA NA NA LTS-024 ERCC3, FHL2, CLASP1, PSD4, NIFK-AS1, LYG2, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, TFCP2L1, GYPC, CYP27C1, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INHBB, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, LINC01191, SULT1C3, MYO7B, NPAS2, NPHP1, INSIG2, MRPL30, REV1, LIPT1, MIR4435-2HG, POLR2D, CCDC93, POU3F3, STEAP3, ACOXL, WDR33, CNOT11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 IWS1, LIMS2, PROC, IL36G, DPP10, EPB41L5, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, RGPD4-AS1, RFX8, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, SAP130, UXS1, SLC35F5, TMEM177, AMMECR1L, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, TMEM87B, LINC01101, MARCO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 IL18RAP, IL1RL2, IL18R1, DDX18, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.275873954812096 233 0.0692489786555902 0.714898431986131 13130 0.215587098705934 2 2 0 -10.3175582313427 LTS-024 NA NA NA NA LTS-024 chr2 128784971 128848834 63864 * c(UGGT1, SAP130) NA 0 NA 1.025 1 NA NA NA NA NA LTS-024 chr2 128848835 129075825 226991 * c(UGGT1, HS6ST1) 0.214 1 NA 1.10452029397799 385 0.239707461529872 4 4 0 -5.77972437263785 LTS-024 chr2 129075826 135745129 6669304 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, FAR2P2, MIR663B, MIR3679, MIR4784, TUBA3E, TUBA3D, LYPD1, ACMSD, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, MED15P9, GPR39, C2orf27A, NCKAP5, GPR148, LOC389033, LINC01120, NOC2LP2, C2orf27B, MGAT5, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, ANKRD30BL, SMPD4, CFC1, POTEI, CFC1B, POTEJ, MZT2A, POTEF, MZT2B, MAP3K19, TMEM163, RAB6C, CCDC115, CCNT2, CCDC74A, CCDC74B, IMP4, NA NA NA NA NA NA NA NA NA LTS-024 HS6ST1) 0.284032470974882 97 0.0670343121992573 0.734496698842492 2532 0.260352394373735 3 2 1 -8.55739846569137 LTS-024 NA NA NA NA LTS-024 chr2 135745130 135757648 12519 * MAP3K19 NA 0 NA 0.690589949948771 33 0.087547303231055 2 NA NA -5.77081153948762 LTS-024 chr2 135757649 135762932 5284 * MAP3K19 NA 0 NA 0.947 1 NA NA NA NA NA LTS-024 chr2 135762933 135911422 148490 * c(RAB3GAP1, MAP3K19) 0.217 1 NA 1.05224486966225 127 0.249925678241391 4 4 0 -5.76587015699218 LTS-024 chr2 135911423 153577013 17665591 * c(ZEB2-AS1, LOC100507600, MIR4773-1, MIR4773-2, STAM2, NXPH2, FMNL2, LYPD6, LYPD6B, ARL6IP6, DARS, RAB3GAP1, UBXN4, R3HDM1, EPC2, ARL5A, MMADHC, HNMT, SPOPL, RBM43, KIF5C, RND3, LCT, TEX41, MIR128-1, MCM6, NEB, ORC4, LRP1B, RIF1, PRPF40A, MBD5, ARHGAP15, YY1P2, TNFAIP6, PABPC1P2, CACNB4, CXCR4, GTDC1, THSD7B, ZRANB3, KYNU, NMI, ACVR2A, ZEB2) 0.181251819601853 87 0.0644478947786973 1.06274946055843 5616 0.328237624149693 4 4 0 -7.32615738748991 LTS-024 chr2 153577014 153617420 40407 * ARL6IP6 0.22 1 NA 1.2045090889966 43 0.470831646818293 5 5 0 -5.76441255680865 LTS-024 chr2 153617421 154334373 716953 * c(ARL6IP6, RPRM) NA 0 NA 1.04601718399764 16 0.118703833131032 4 NA NA -5.78507456909014 LTS-024 chr2 154334374 158637165 4302792 * c(LOC100144595, GALNT5, GALNT13, ACVR1C, GPD2, KCNJ3, NR4A2, RPRM, ERMN, ACVR1, CYTIP) 0.356640117809063 6 0.029451089396942 1.32610205818622 980 0.373810053199938 6 4 2 -6.81427984277548 LTS-024 chr2 158637166 158655914 18749 * ACVR1 NA 0 NA 2.41 1 NA NA NA NA NA LTS-024 chr2 158655915 165349485 6693571 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, CCDC148, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, GRB14, BAZ2B, ITGB6, LY75, FIGN, CCDC148-AS1, SLC4A10, RBMS1, IFIH1, MARCH7, PKP4, TANC1, ACVR1, KCNH7, DAPL1, CD302) 0.224422266948862 51 0.0771901446518437 1.99911132048758 3027 0.506607120825889 10 8 2 -6.84348188245091 LTS-024 chr2 165349486 165349535 50 * GRB14 NA 0 NA 1.604 1 NA NA NA NA NA LTS-024 chr2 165349536 168116260 2766725 * c(SNORA70F, LOC100506124, TTC21B-AS1, XIRP2, SLC38A11, COBLL1, GALNT3, GRB14, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3) 0.300861688005417 43 0.0655988007345204 1.65603499616575 2342 0.755317300128347 8 6 2 -6.78082141890581 LTS-024 chr2 168725424 174231236 5505813 * c(NA, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, RAPGEF4, NOSTRIN, BBS5, CCDC173, UBR3, MYO3B, KLHL23, DLX1, DLX2, DYNC1I2, CERS6, METAP1D, GAD1, GORASP2, STK39, METTL5, MLK7-AS1, ITGA6, SP5, LRP2, LINC01124, PHOSPHO2, PDK1, ZAK, SPC25, G6PC2, SSB, FASTKD1, METTL8, CYBRD1, DCAF17, CDCA7, HAT1, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, PPIG, TLK1) 0.249150615649904 64 0.0548571715985581 1.8781179442726 4573 0.464440547651807 9 7 2 -6.78704027150705 LTS-024 chr2 174231237 174231804 568 * CDCA7 NA 0 NA 1.535 1 NA NA NA NA NA LTS-024 chr2 174231805 178085137 3853333 * c(MIR933, SP9, MIR1246, HOXD-AS2, MTX2, CHN1, CHRNA1, ATF2, GPR155, HNRNPA3, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, ATP5G3, SP3, WIPF1, SCRN3, LNPK, CDCA7, CIR1) 0.284150989609051 35 0.0793603101274775 1.54407045756205 2039 0.417305798053702 7 5 2 -6.86471521391891 LTS-024 chr2 178085138 178085202 65 * HNRNPA3 NA 0 NA 2.358 1 NA NA NA NA NA LTS-024 chr2 178085203 178092502 7300 * HNRNPA3 0.158 1 NA 2.38278243261235 5 0.342458756640854 11 11 0 -5.76441466264704 LTS-024 chr2 178092503 178362463 269961 * c(LOC100130691, MIR3128, NFE2L2, AGPS) NA 0 NA 2.22397614464896 142 0.483968562484774 10 NA NA -5.76489928342362 LTS-024 chr2 178362464 178407946 45483 * AGPS 0.347 1 NA 1.35964049830343 135 0.26969469932828 6 6 0 -5.76475142556293 LTS-024 chr2 178407947 179264161 856215 * c(MIR548N, OSBPL6, RBM45, TTC30B, PDE11A, AGPS, TTC30A) 0.360484744763372 29 0.0904716704427931 1.30297028255184 590 0.560998096295413 6 4 2 -6.74202474304603 LTS-024 chr2 179264162 179296161 32000 * c(MIR548N, PRKRA) NA 0 NA 0.637 1 NA NA NA NA NA LTS-024 chr2 179296162 179315937 19776 * c(MIR548N, PRKRA) NA 0 NA 0.747462900519917 65 0.183555212035465 3 NA NA -5.76809754586952 LTS-024 chr2 179315938 179317968 2031 * c(MIR548N, DFNB59, PRKRA) NA 0 NA 0.92 1 NA NA NA NA NA LTS-024 chr2 179317969 179366003 48035 * c(MIR548N, DFNB59, FKBP7, PLEKHA3) NA 0 NA 1.02580181195243 149 0.203700518045632 4 NA NA -5.76443990191334 LTS-024 chr2 179366004 179367041 1038 * c(MIR548N, PLEKHA3) NA 0 NA 1.532 1 NA NA NA NA NA LTS-024 chr2 179367042 179553020 185979 * c(MIR548N, TTN-AS1, PLEKHA3, TTN) 0.37767677850164 6 0.0351776444161156 1.3143690993494 1985 0.266165249268831 6 4 2 -6.84579960080485 LTS-024 chr2 179553021 179553323 303 * TTN NA 0 NA 0.9 1 NA NA NA NA NA LTS-024 chr2 179553324 183387367 3834044 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, PPP1R1C, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, CWC22, SSFA2, TTN, SESTD1) 0.433148555570913 23 0.100129560339367 0.977537335395255 2414 0.223419455026992 4 2 2 -6.81236676785766 LTS-024 chr2 183387368 183582612 195245 * c(PDE1A, DNAJC10) NA 0 NA 1.416 1 NA NA NA NA NA LTS-024 chr2 183582613 184126050 543438 * c(NCKAP1, NUP35, DUSP19, FRZB, DNAJC10) 0.303896858467507 16 0.156297352824672 1.39320153578726 593 0.424357017261669 7 5 2 -6.77143739066721 LTS-024 chr2 184126051 184129286 3236 * character(0) NA 0 NA 1.029 1 NA NA NA NA NA LTS-024 chr2 184129287 186678468 2549182 * c(FSIP2, ZNF804A) 0.429015616554531 7 0.0173108828967984 1.05664223106229 613 0.332359501148065 4 2 2 -6.84424817897586 LTS-024 chr2 186678469 186678567 99 * FSIP2 NA 0 NA 1.105 1 NA NA NA NA NA LTS-024 chr2 186678568 187351016 672449 * c(FSIP2, ZC3H15) 0.487 1 NA 2.29056631202349 38 1.10914682043206 11 11 0 -5.76467573273021 LTS-024 chr2 187351017 187351065 49 * ZC3H15 NA 0 NA 1.069 1 NA NA NA NA NA LTS-024 chr2 187351066 192553264 5202199 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, ANKAR, ZSWIM2, FAM171B, HIBCH, MSTN, GLS, SLC40A1, INPP1, ITGAV, MYO1B, NAB1, GULP1, PMS1, ASNSD1, MFSD6, ZC3H15, OSGEPL1, NABP1, STAT1, STAT4, MIR561, TFPI, WDR75, C2orf88, ORMDL1) 0.446443342658186 49 0.0763373398526718 1.02793812859978 3613 0.317385135330635 4 2 2 -6.74678012610716 LTS-024 chr2 192553265 192699002 145738 * character(0) NA 0 NA 1.321 1 NA NA NA NA NA LTS-024 chr2 192699003 192821054 122052 * c(TMEFF2, SDPR) 0.351954660894047 4 0.0459302006672444 1.45853311336181 118 0.476408254778313 9 6 3 -6.76393112890778 LTS-024 chr2 192821055 203826688 11005634 * c(SNORD11B, LOC100130452, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, C2orf66, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, SNORD11, NA NA NA NA NA NA NA NA NA LTS-024 SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, CASP10, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.430305221793294 108 0.107170417354009 0.942380540365793 6375 0.268458563210959 4 2 2 -7.24925662305983 LTS-024 NA NA NA NA LTS-024 chr2 203826689 207911307 4084619 * c(GCSHP3, MIR3130-1, MIR3130-2, ABI2, PARD3B, CPO, MDH1B, CTLA4, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, DYTN, NDUFS1, INO80D, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, CARF, ADAM23, NRP2, CD28) 0.442397500645359 34 0.11732893642507 1.00971134150752 2803 0.290855714489328 4 2 2 -6.73735980985779 LTS-024 chr2 207911308 207938897 27590 * KLF7 NA 0 NA 1.942 1 NA NA NA NA NA LTS-024 chr2 207938898 209204919 1266022 * c(MIR2355, LOC100507443, IDH1-AS1, MIR4775, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, METTL21A, CCNYL1, PIKFYVE, IDH1, PLEKHM3, C2orf80, FZD5, KLF7) 0.361195656601525 22 0.120200094719442 1.36901802296218 1215 0.402240554320307 6 4 2 -6.73567340205696 LTS-024 chr2 209204920 209207256 2337 * PIKFYVE NA 0 NA 0.932 1 NA NA NA NA NA LTS-024 chr2 209207257 210962706 1755450 * c(KANSL1L, PIKFYVE, UNC80, MAP2, PTH2R, RPE) 0.444044881757019 16 0.0281531525765766 1.01655794160017 1063 0.272475840467547 4 2 2 -6.78304237368052 LTS-024 chr2 210962707 210962797 91 * KANSL1L NA 0 NA 1.169 1 NA NA NA NA NA LTS-024 chr2 210962798 212244909 1282112 * c(LANCL1, CPS1, KANSL1L, ERBB4, CPS1-IT1, ACADL, MYL1) 0.39342977990295 22 0.0664146752676627 1.32757017503993 606 0.407027101698475 5 3 2 -6.82530662194129 LTS-024 chr2 212244910 216298084 4053175 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, ERBB4, IKZF2, FN1, ABCA12, VWC2L, ATIC, BARD1, SPAG16) 0.446875401902883 33 0.042210601138634 1.02640709539692 1447 0.401487409077694 4 2 2 -6.77416336132308 LTS-024 chr2 216298085 216299550 1466 * FN1 0.033 1 NA 1.03563228218331 10 0.234639416031398 4 4 0 -5.76441426495377 LTS-024 chr2 216299551 217368299 1068749 * c(PKI55, FN1, SMARCAL1, MREG, PECR, MARCH4, RPL37A, LINC00607, XRCC5, TMEM169) 0.475182296243323 10 0.0287264879703578 0.951490389116938 572 0.229504129278664 4 2 2 -7.74343638595585 LTS-024 chr2 217368300 217443596 75297 * character(0) NA 0 NA 1.415 1 NA NA NA NA NA LTS-024 chr2 217443597 220197492 2753896 * c(LOC100129175, MIR3131, ABCB6, ARPC2, ZFAND2B, AAMP, CRYBA2, SLC23A3, LINC00608, GPBAR1, CYP27A1, CFAP65, PNKD, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, MIR375, PRKAG3, FEV, ANKZF1, USP37, PTPRN, CTDSP1, BCS1L, TMBIM1, RNF25, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, WNT10A, PLCD4, NA NA NA NA NA NA NA NA NA LTS-024 STK16, CDK5R2, CNOT9, TTLL4) 0.360359128449144 54 0.0469758736417165 1.39131572649468 4408 0.486493056402818 6 4 2 -6.7349211595985 LTS-024 NA NA NA NA LTS-024 chr2 220197493 220197928 436 * RESP18 NA 0 NA 1.95982497330323 3 0.403567838163548 9 NA NA -5.76441022410599 LTS-024 chr2 220197929 220238352 40424 * DNPEP NA 0 NA 0.827 1 NA NA NA NA NA LTS-024 chr2 220238353 220238496 144 * DNPEP 0.48 1 NA 1.04379090160987 3 0.173442593769043 4 4 0 -5.7644117680932 LTS-024 chr2 220238497 224463790 4225294 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, GMPPA, INHA, PAX3, ASIC4, SLC4A3, SCG2, CHPF) 0.46268704844466 25 0.0335516020481884 1.07779805131496 2047 0.257358199352185 4 2 2 -7.21090826669875 LTS-024 chr2 224463791 225907150 1443360 * c(MIR4439, AP1S3, SERPINE2, DOCK10, WDFY1, MRPL44, SCG2, FAM124B, CUL3) 0.458834606567866 16 0.0361476140291444 0.927652019375083 862 0.212906705682109 4 2 2 -7.12984807441875 LTS-024 chr2 225907151 225907187 37 * DOCK10 NA 0 NA 1.043 1 NA NA NA NA NA LTS-024 chr2 225907188 232756958 6849771 * c(MIR1471, MIR4777, MIR5702, MIR5703, NMUR1, SP140, COL4A3, COL4A4, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, C2orf72, SNORD82, AGFG1, HTR2B, SP110, SPATA3-AS1, IRS1, NCL, PDE6D, CAB39, PID1, DOCK10, C2orf83, MFF, PSMD1, PTMA, NYAP2, SNORD20, CCL20, LOC646736, COPS7B, SNORA75, LOC654841, SP100, TM4SF20, ARMC9, SPHKAP, SLC19A3, ITM2C, RHBDD1, DNER, GPR55, B3GNT7, TRIP12, NA NA NA NA NA NA NA NA NA LTS-024 SP140L) 0.456516146024027 74 0.0606181000531529 1.00937179922275 4082 0.38357372714145 4 2 2 -6.80427800183868 LTS-024 NA NA NA NA LTS-024 chr2 232756959 233243981 487023 * c(MIR1471, DIS3L2, ALPP, NPPC) 0.444 1 NA 1.45892430048701 195 0.401077279180997 6 6 0 -5.76736148203015 LTS-024 chr2 233243982 233244930 949 * ALPP 0.38 1 NA 1.65016708225236 15 0.514801552149212 7 7 0 -5.76441286411476 LTS-024 chr2 233244931 235402656 2157726 * c(LOC100286922, ARL4C, CHRND, CHRNG, MSL3P1, TIGD1, ALPI, ALPP, ALPPL2, NGEF, GIGYF2, ECEL1P2, INPP5D, KCNJ13, C2orf82, DNAJB3, NEU2, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, SAG, PRSS56, SPP2, SCARNA6, SCARNA5, TRPM8, EFHD1, DGKD, ECEL1, EIF4E2) 0.353052067741458 70 0.0600215023582517 1.37259648214029 2840 0.363901235465627 6 4 2 -6.75278654843912 LTS-024 chr2 235402657 235403987 1331 * ARL4C 0.361 1 NA 1.69160673417286 35 0.669771144910425 8 8 0 -5.76441510613469 LTS-024 chr2 235403988 235405282 1295 * ARL4C NA 0 NA 1.37160535785173 27 0.139396634293736 6 NA NA -5.76442843261827 LTS-024 chr2 235405283 235405389 107 * ARL4C NA 0 NA 0.83 1 NA NA NA NA NA LTS-024 chr2 235405390 242815680 7410291 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, PRLH, NA NA NA NA NA NA NA NA NA LTS-024 THAP4, ANKMY1, PDCD1, SCLY, ASB1, KIF1A, PPP1R7, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, D2HGDH, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.451077686846396 185 0.0719575280299985 1.03007764632236 6855 0.250953799546064 4 2 2 -6.76772136732733 LTS-024 NA NA NA NA LTS-024 chr2 242815681 243037216 221536 * LOC728323 NA 0 NA 1.03147648095794 41 0.228411772474358 4 NA NA -5.76478086481164 LTS-024 chr3 239351 361508 122158 * CHL1 0.471 1 NA 0.762813990070797 9 0.208854681005186 3 3 0 -5.77569526123509 LTS-024 chr3 361509 3221430 2859922 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, IL5RA, TRNT1, CRBN) 0.358262651326755 28 0.0578819611672879 0.807806791137753 748 0.233131621081075 3 2 1 -6.85622010482189 LTS-024 chr3 3221431 4403537 1182107 * c(SUMF1, LRRN1, SETMAR) 0.304 1 NA 0.756742004800646 157 0.176044145243847 3 3 0 -5.94436625469323 LTS-024 chr3 4403538 8920103 4516566 * c(EGOT, LMCD1-AS1, BHLHE40-AS1, MIR4790, SUMF1, GRM7, LINC00312, LMCD1, ITPR1, OXTR, SSUH2, ARL8B, RAD18, BHLHE40, CAV3, EDEM1) 0.292666389334539 46 0.0907030830532365 0.769111716655265 1328 0.228421572044778 3 2 1 -7.54154182081941 LTS-024 chr3 8920104 9543643 623540 * c(SRGAP3-AS3, THUMPD3, LHFPL4, THUMPD3-AS1, SETD5, RAD18, SRGAP3) 0.240237189743856 11 0.127541223282371 0.694156114708682 717 0.19155683796476 2 2 0 -6.86656804160937 LTS-024 chr3 9543644 9695470 151827 * c(LHFPL4, MTMR14) NA 0 NA 0.702357261655057 46 0.140641286603844 2 NA NA -5.8081069638474 LTS-024 chr3 9695471 9834538 139068 * c(ARPC4-TTLL3, ARPC4, TADA3, CPNE9, OGG1, MTMR14, BRPF1, CAMK1) 0.49 1 NA 1.0134709511147 545 0.22454395321764 4 4 0 -5.76446105401393 LTS-024 chr3 9834539 15062428 5227890 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, FGD5-AS1, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, FGD5, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, HRH1, TPRXL, IRAK2, LOC401052, ATP2B2, CCDC174, GHRL, PPARG, TMEM40, EMC3, BRK1, RAF1, RPL32, CIDEC, SEC13, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, NA NA NA NA NA NA NA NA NA LTS-024 XPC, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, VGLL4, TATDN2, IQSEC1) 0.451067749903264 155 0.0667101069893363 1.01022360648165 5130 0.263091564855502 4 2 2 -6.76740100348063 LTS-024 NA NA NA NA LTS-024 chr3 15062429 29322525 14260097 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, LINC00693, BTD, MIR563, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, NA NA NA NA NA NA NA NA NA LTS-024 EOMES, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.436502659867384 58 0.114378141909381 0.950687786138704 4590 0.240627368902474 4 2 2 -7.37330585518625 LTS-024 NA NA NA NA LTS-024 chr3 29322526 37050498 7727973 * c(PDCD6IP, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, CCR4, TRIM71, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GADL1, ZNF860, MIR128-2, MLH1, DYNC1LI1, CMTM6, TMPPE, STAC, TGFBR2, UBP1, DCLK3, EPM2AIP1, TRANK1) 0.432423563222322 50 0.115878587058936 1.01604325043905 3149 0.808325639923917 4 2 2 -6.73363100544245 LTS-024 chr3 37050499 37053261 2763 * MLH1 NA 0 NA 1.341 1 NA NA NA NA NA LTS-024 chr3 37053262 37152472 99211 * c(MLH1, LRRFIP2) 0.407538023749629 2 0.0212132034355964 1.33500682537112 200 0.345033651552305 5 3 2 -6.78041306946552 LTS-024 chr3 37152473 37458758 306286 * c(GOLGA4, C3orf35, LRRFIP2) 0.384 1 NA 1.22141696323397 293 0.277781831853367 5 5 0 -5.76461317130659 LTS-024 chr3 37458759 39557238 2098480 * c(ACVR2B-AS1, CTDSPL, SCN11A, CCR8, CX3CR1, XIRP1, TTC21A, ACAA1, C3orf35, ITGA9, RPSA, MIR26A1, MOBP, MYD88, VILL, PLCD1, SLC25A38, SNORA6, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, ACVR2B, SLC22A14, SLC22A13, DLEC1, EXOG, XYLB, OXSR1) 0.376918975587328 78 0.0733841418000665 1.31893034312639 3066 0.406004735223017 6 4 2 -6.78324085148323 LTS-024 chr3 39557239 39557505 267 * MOBP NA 0 NA 1.4154507458283 5 0.183848578999132 6 NA NA -5.76441061311734 LTS-024 chr3 39557506 39942245 384740 * c(MYRIP, MOBP) NA 0 NA 1.037 1 NA NA NA NA NA LTS-024 chr3 39942246 42226151 2283906 * c(EIF1B, CTNNB1, TRAK1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, EIF1B-AS1, ULK4, RPL14, ENTPD3) 0.432 1 NA 1.02040759949946 871 0.221250947125468 4 4 0 -5.76445558041326 LTS-024 chr3 42226152 42754824 528673 * c(LYZL4, KLHL40, CCDC13, TRAK1, NKTR, SS18L2, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.458539936630147 32 0.0865591118179344 1.0565102159395 978 0.32476944323615 4 2 2 -6.7777378323122 LTS-024 chr3 42754825 46623760 3868936 * c(KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, ACKR2, TMEM42, CCDC13, CYP8B1, SACM1L, EXOSC7, LARS2, TMEM158, HIGD1A, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, NA NA NA NA NA NA NA NA NA LTS-024 LIMD1, CCRL2, ZNF502) 0.451707300776426 68 0.0638740048743075 0.985263906585052 4503 0.357733348652868 4 2 2 -6.79021881406185 LTS-024 NA NA NA NA LTS-024 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.106 1 NA NA NA NA NA LTS-024 chr3 46623907 47059256 435350 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.445687873172973 14 0.128219163334323 1.11692285997165 925 0.25204425251377 4 2 2 -6.77087170186123 LTS-024 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.779 1 NA NA NA NA NA LTS-024 chr3 47061216 48638801 1577586 * c(MIR1226, MIR711, MIR4443, NME6, CSPG5, TREX1, COL7A1, DHX30, SCAP, KLHL18, PTPN23, FBXW12, KIF9-AS1, SETD2, MAP4, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, KIF9, SPINK8, SMARCC1, UQCRC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.464761149715236 21 0.0273048922879608 1.01174498989692 3087 0.213331619572916 4 2 2 -7.33951911334047 LTS-024 chr3 48638802 48894458 255657 * c(MIR4793, CELSR3, TMEM89, IP6K2, NCKIPSD, PRKAR2A, SLC26A6, UQCRC1, SLC25A20) 0 1 NA 1.02206334554638 835 0.232607445352269 4 4 0 -5.76443390272658 LTS-024 chr3 48894459 49281834 387376 * c(ARIH2, USP19, WDR6, KLHDC8B, LAMB2P1, NDUFAF3, CCDC36, IMPDH2, LAMB2, MIR191, MIR425, P4HTM, QRICH1, DALRD3, QARS, ARIH2OS, C3orf84, CCDC71, SLC25A20) 0.462141051360013 3 0.0483356321292412 1.05355606197243 1253 0.208506940680157 4 2 2 -6.91088181115215 LTS-024 chr3 49281835 49400127 118293 * c(MIR4271, GPX1, CCDC36, C3orf62, RHOA, USP4) 0.399460584814111 3 0.0770216419802469 1.27920804238248 374 0.23683988794415 5 3 2 -6.75597503201801 LTS-024 chr3 49400128 49405877 5750 * RHOA NA 0 NA 2.041 1 NA NA NA NA NA LTS-024 chr3 49405878 49463932 58055 * c(AMT, RHOA, TCTA, NICN1) 0.259088830058189 3 0.0164620776331543 2.01850174639565 196 0.406696022747814 9 7 2 -6.73535293343417 LTS-024 chr3 49463933 49466524 2592 * NICN1 NA 0 NA 1.239 1 NA NA NA NA NA LTS-024 chr3 49466525 49899795 433271 * c(BSN-AS2, MIR5193, TRAIP, DAG1, GMPPB, APEH, AMIGO3, CDHR4, FAM212A, MST1, RNF123, UBA7, CAMKV, NICN1, BSN, IP6K1) 0.370968411191347 33 0.0498924031686127 1.37663036567316 1391 0.297462918935538 6 4 2 -6.75024377547875 LTS-024 chr3 49899796 49929301 29506 * c(MST1R, CAMKV) NA 0 NA 1.51012946563469 35 0.229020046093361 7 NA NA -5.76535878500568 LTS-024 chr3 49929302 49932645 3344 * MST1R NA 0 NA 1.127 1 NA NA NA NA NA LTS-024 chr3 49932646 49940078 7433 * MST1R 0.498 1 NA 1.07783591428112 69 0.154342978142709 4 4 0 -5.76499767689395 LTS-024 chr3 49940079 56469048 6528970 * c(SNORD19B, LINC00696, PARP3, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, RBM5-AS1, CACNA2D3-AS1, RBM6, RBM5, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, GNAI2, GNAT1, SPCS1, GRM2, RBM15B, HYAL1, ITIH1, ITIH3, ITIH4, TMEM110, IQCF2, IQCF5, MUSTN1, IQCF3, NA NA NA NA NA NA NA NA NA LTS-024 MIRLET7G, MIR135A1, IQCF6, SMIM4, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, RPL29, SEMA3F, NT5DC2, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, TNNC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, ESRG, WDR82, BAP1, HYAL3, MON1A, ABHD14B, HYAL2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1) 0.448852887051102 133 0.0767318271441425 1.03475004498176 8132 0.232622431969487 4 2 2 -6.7668537047861 LTS-024 NA NA NA NA LTS-024 chr3 56469049 56762577 293529 * c(FAM208A, ERC2, CCDC66, ARHGEF3) 0.446395497277307 13 0.0458878230873105 0.851109952987525 357 0.17093317311483 4 2 2 -6.95380487021056 LTS-024 chr3 56762578 58572689 1810112 * c(ARHGEF3-AS1, RPP14, FAM107A, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.447379699502338 73 0.0662553205697865 0.977848925032134 2480 0.213569723614682 4 2 2 -6.79141542522163 LTS-024 chr3 58572690 58572713 24 * FAM107A NA 0 NA 1.207 1 NA NA NA NA NA LTS-024 chr3 58572714 64580068 6007355 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, FAM107A, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, THOC7, CADPS, PSMD6) 0.436120445415276 31 0.119295359489374 1.04846755479343 1689 0.381595099963682 4 2 2 -6.75293290810673 LTS-024 chr3 64580069 66551435 1971367 * c(ADAMTS9-AS2, MAGI1-AS1, SLC25A26, LRIG1, ADAMTS9, MIR548A2, MAGI1) 0.337308670480318 12 0.0492479041239936 1.5964157547914 660 0.372743969409357 7 5 2 -6.80742249965072 LTS-024 chr3 66551436 73114907 6563472 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, PPP4R2, LINC00870, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.445644185519847 34 0.0881116614537229 0.972385692788462 1996 0.245280542437165 4 2 2 -6.88118626241929 LTS-024 chr3 73114908 74344356 1229449 * c(PPP4R2, PDZRN3, CNTN3) 0.455822763251634 9 0.054591920444126 1.08854171992406 281 0.37679061845752 4 2 2 -6.83445801500948 LTS-024 chr3 74344357 74348971 4615 * CNTN3 0 1 NA 1.22204845675483 11 0.726072498258454 5 5 0 -5.76441063388074 LTS-024 chr3 74348972 75786245 1437274 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.326532728180862 116 0.103645885423481 1.22797137374692 293 0.666671887113913 4 3 1 -6.81084324916521 LTS-024 chr3 75786246 75786252 7 * ZNF717 0.483 1 NA 1.092 1 NA NA NA NA NA LTS-024 chr3 75786253 78735011 2948759 * c(ZNF717, ROBO1, ROBO2) 0.383006398360507 77 0.0790059330511295 1.08469459504553 503 0.365442500612817 5 3 2 -6.97418344503556 LTS-024 chr3 78735012 89449007 10713996 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.427689463925343 16 0.119322811454195 0.980576911306625 1116 0.256871213962772 4 2 2 -6.87720527684348 LTS-024 chr3 89449008 90283666 834659 * EPHA3 NA 0 NA 1.02020532200957 137 0.232579499974743 4 NA NA -5.76442085118997 LTS-024 chr3 93591838 93611898 20061 * PROS1 0 1 NA 0.912542690147628 47 0.347044904281015 3 3 0 -5.76535396539011 LTS-024 chr3 93611899 122598293 28986395 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, HHLA2, FSTL1, FILIP1L, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, ARL13B, DHFR2, GABRR3, TIGIT, USF3, NA NA NA NA NA NA NA NA NA LTS-024 ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, FAM162A, ZBTB11, MORC1, GOLGB1, GPR15, TUSC7, LINC00636, EPHA6, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, LNP1, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, STX19, CD200, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, EAF2, PROS1, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, OR5AC2, PARP9, ARL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CMSS1, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.444143472231509 245 0.100917314583458 0.979517693210997 14388 0.303626296880216 4 2 2 -7.01949933979802 LTS-024 NA NA NA NA LTS-024 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.125 1 NA NA NA NA NA LTS-024 chr3 122598385 123212563 614179 * c(LOC100129550, PDIA5, ADCY5, SEC22A, SEMA5B, DIRC2) 0.452735470494365 11 0.0301140257264708 1.06514295298022 603 0.225896024717656 4 2 2 -6.92920035398439 LTS-024 chr3 123212564 123218101 5538 * HACD2 0 1 NA 0.968353499333841 29 0.268815060861204 4 4 0 -5.76453011637714 LTS-024 chr3 123218102 123953776 735675 * c(MYLK-AS1, MIR5002, HACD2, MYLK, ROPN1, CCDC14, KALRN) 0.463073020296763 5 0.019157244060668 1.05997754779395 652 0.278057964206108 4 2 2 -7.75699103340746 LTS-024 chr3 123953777 123983396 29620 * KALRN NA 0 NA 1.889 1 NA NA NA NA NA LTS-024 chr3 123983397 140123607 16140211 * c(FAM86JP, MIR548I1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, NPHP3, ATP2C1, GP9, NA NA NA NA NA NA NA NA NA LTS-024 DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SLC41A3, ACPP, MSL2, FAIM, PPP2R3A, CDV3, IFT122, MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TXNRD3NB, COL6A4P2, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12, COPB2) 0.345964937756481 233 0.0777576933793714 1.38364454634878 11772 0.350773598811855 6 4 2 -6.77340370537073 LTS-024 NA NA NA NA LTS-024 chr3 140123608 140139913 16306 * CLSTN2 NA 0 NA 1.735 1 NA NA NA NA NA LTS-024 chr3 140139914 145803681 5663768 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, C3orf58, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, TRIM42, PAQR9, ATP1B3, PLOD2, PLS1, XRN1, ATR, SLC25A36, RASA2, CLSTN2, TFDP2, TRPC1, SPSB4, PXYLP1, CHST2, RNF7) 0.284309486271389 55 0.0940588074518238 1.59618021689034 2984 0.456338605433766 7 5 2 -6.81766271741447 LTS-024 chr3 145803682 145804568 887 * PLOD2 NA 0 NA 1.119 1 NA NA NA NA NA LTS-024 chr3 145804569 167813514 22008946 * c(WWTR1-AS1, TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, CP, CPA3, CPB1, PPM1L, WDR49, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, AADACP1, SLITRK3, PLCH1, WWTR1, TIPARP, ARHGEF26, SERP1, GOLIM4, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, NA NA NA NA NA NA NA NA NA LTS-024 AADACL2, GPR149, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PLOD2, PLSCR1, P2RY13, GPR87, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, BCHE, RAP2B, RARRES1, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, SIAH2, P2RY12, IQCJ, HLTF, SSR3, SCARNA7, TM4SF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, TSC22D2, P2RY14) 0.341669653719614 180 0.100264723474573 1.33026391921844 8491 0.851207346372133 6 4 2 -6.80829136802123 LTS-024 NA NA NA NA LTS-024 chr3 167813515 169482989 1669475 * c(MECOM, MIR551B, TERC, EGFEM1P) 0.475172744999472 2 0.0311126983722081 1.79699756951084 219 0.358502240957871 8 4 4 -7.5637073458342 LTS-024 chr3 169482990 169485211 2222 * ACTRT3 NA 0 NA 1.203 1 NA NA NA NA NA LTS-024 chr3 169485212 183753930 14268719 * c(LOC100128164, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, KCNMB2, DNAJC19, TTC14, LRRC34, ECT2, HTR3D, RPL22L1, NLGN1, TNIK, MCF2L2, ATP11B, NAALADL2, GHSR, GPR160, LAMP3, KCNMB3, CCDC39, LRRIQ4, SAMD7, SOX2-OT, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, PIK3CA, PLD1, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, MYNN, EIF5A2, MCCC1, MRPL47, NCEH1, SLC7A14, GNB4, NA NA NA NA NA NA NA NA NA LTS-024 ZMAT3, FNDC3B, SKIL, SLC2A2, SOX2, MIR569, SEC62, TBL1XR1, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTRT3, ACTL6A, TNFSF10, USP13, KLHL6) 0.355052718590088 93 0.0802731719890741 1.32972981972453 6742 0.402368779440878 6 4 2 -6.88034402990081 LTS-024 NA NA NA NA LTS-024 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.594 1 NA NA NA NA NA LTS-024 chr3 183754123 190167708 6413586 * c(MIR944, LOC100131635, MIR1224, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, TMEM207, RTP1, CRYGS, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, VPS8, LOC253573, FETUB, HTR3E, C3orf70, TPRG1, HRG, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, KNG1, FLJ42393, LPP, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, SENP2, RFC4, BCL6, SNORA63, SNORD2, NA NA NA NA NA NA NA NA NA LTS-024 SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, ST6GAL1, SST, SNORA81, SNORD66, THPO, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.347463684927725 156 0.0804695286255664 1.42118336652412 5903 0.412584054100388 6 4 2 -6.75906201894097 LTS-024 NA NA NA NA LTS-024 chr3 190167709 190282025 114317 * IL1RAP NA 0 NA 2.005 1 NA NA NA NA NA LTS-024 chr3 190282026 190577694 295669 * c(IL1RAP, GMNC) 0.358729532276203 6 0.19197647425314 2.00521719314837 245 1.09963334696545 9 6 3 -6.73339735171499 LTS-024 chr3 190577695 190578498 804 * GMNC NA 0 NA 1.247 1 NA NA NA NA NA LTS-024 chr3 190578499 193209222 2630724 * c(SNAR-I, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, OSTN, ATP13A5, HRASLS, GMNC, ATP13A4, MGC2889) 0.352125340858323 46 0.0939180339522143 1.43439493134258 880 0.847914032182919 6 4 2 -6.74187704555214 LTS-024 chr3 193209223 193210704 1482 * ATP13A4 NA 0 NA 1.82 1 NA NA NA NA NA LTS-024 chr3 193210705 194077283 866579 * c(DPPA2P3, LINC00887, OPA1-AS1, LRRC15, CPN2, HES1, OPA1, LOC647323, ATP13A4) 0.338955352108369 9 0.0437067246288003 1.72346682518142 323 0.427505942019177 9 6 3 -6.85738661903811 LTS-024 chr3 194077284 195452013 1374730 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, MUC20, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, MIR570, SDHAP2, ATP13A3, TMEM44) 0.364961001563185 40 0.0703731992983634 1.33279710921563 1187 0.39194086565145 6 4 2 -6.74707730952599 LTS-024 chr3 195452014 195452618 605 * MUC20 NA 0 NA 3.405 1 NA NA NA NA NA LTS-024 chr3 195452619 195476016 23398 * c(MUC20, MUC4) 0.332877863965913 15 0.046149549861087 2.29978733971666 86 3.70936242743378 19 13 6 -6.74093311873969 LTS-024 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.036 1 NA NA NA NA NA LTS-024 chr3 195477782 197566254 2088473 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.336053033363717 74 0.0606233462848456 1.31166874406082 2813 0.319305441128789 6 4 2 -6.9002696737849 LTS-024 chr3 197566255 197770512 204258 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.32914777466093 383 0.268638497524703 6 NA NA -5.76914858511638 LTS-024 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.214 1 NA 0.727883628272453 13 0.151934955718659 3 3 0 -5.76750121330153 LTS-024 chr4 60336 683239 622904 * c(ZNF595, ZNF721, ZNF718, MYL5, PDE6B, ATP5I, PIGG, ZNF876P, ZNF732, ZNF141, ABCA11P, MFSD7) 0.289812706989874 8 0.0632088375376192 0.605284756034521 675 0.165542680283648 2 2 0 -7.78513460396434 LTS-024 chr4 683240 727382 44143 * PCGF3 NA 0 NA 1.363 1 NA NA NA NA NA LTS-024 chr4 727383 1209932 482550 * c(LOC100129917, LOC100130872, TMED11P, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, DGKQ, GAK, RNF212, IDUA, FGFRL1, TMEM175) 0.0900917083294714 42 0.0298445060476987 1.33970749294328 1081 0.458937773914008 6 6 0 -6.73629446962136 LTS-024 chr4 1209933 1348661 138729 * c(MAEA, CTBP1, UVSSA, CTBP1-AS2) NA 0 NA 1.29600858903722 244 0.233306776902618 5 NA NA -5.77157918676338 LTS-024 chr4 1348662 1348877 216 * UVSSA NA 0 NA 0.607 1 NA NA NA NA NA LTS-024 chr4 1348878 1388350 39473 * c(CRIPAK, UVSSA) 0.265 1 NA 0.679345236066567 133 0.14416781133937 2 2 0 -5.7691395163819 LTS-024 chr4 1388351 3510646 2122296 * c(MIR943, MIR4800, HTT-AS, MFSD10, TACC3, MXD4, ADD1, FAM53A, FGFR3, CRIPAK, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, MSANTD1, POLN, LETM1, C4orf48, CFAP99, LRPAP1, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, NOP14, FAM193A, TMEM129) 0.194261668309078 59 0.0617380639857673 0.63919500510388 3702 0.16296748133827 2 2 0 -6.73886713391687 LTS-024 chr4 3510647 3589560 78914 * c(LINC00955, LRPAP1) 0.42 1 NA 0.658876886108806 109 0.219593904379513 2 2 0 -5.76553545381261 LTS-024 chr4 3589561 4190595 601035 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.452052981721328 22 0.0389916185910039 0.846604866250147 95 0.297304194175898 4 2 2 -6.97152579968787 LTS-024 chr4 4190596 4199634 9039 * OTOP1 0.194 1 NA 0.67344437678539 15 0.159165622035964 2 2 0 -5.76507477804989 LTS-024 chr4 4199635 25819972 21620338 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, NA NA NA NA NA NA NA NA NA LTS-024 NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.19846709645562 182 0.0678710040835774 0.65426300424415 8752 0.198992255935127 2 2 0 -6.96035676137224 LTS-024 NA NA NA NA LTS-024 chr4 25819973 25931418 111446 * c(SEL1L3, SMIM20) 0.12940759709285 2 0.0346482322781409 0.857677933998867 87 0.179260040879392 4 4 0 -6.80382717599792 LTS-024 chr4 25931419 25948364 16946 * SMIM20 NA 0 NA 0.687 1 NA NA NA NA NA LTS-024 chr4 25948365 47322313 21373949 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, PTTG2, LIAS, ARAP2, GNPDA2, SHISA3, KLB, COX7B2, SMIM14, LIMCH1, TBC1D1, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, UBE2K, APBB2, LOC344967, RBPJ, KCTD8, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, TMEM33, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, GUF1, RPL9, MIR574, NA NA NA NA NA NA NA NA NA LTS-024 TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, PHOX2B, FAM114A1) 0.195454239096262 177 0.0629445045847664 0.633491397142571 6499 0.201497150952635 2 2 0 -6.74551386450149 LTS-024 NA NA NA NA LTS-024 chr4 47322314 47405372 83059 * GABRB1 NA 0 NA 0.92 1 NA NA NA NA NA LTS-024 chr4 47405373 48604160 1198788 * c(CORIN, CNGA1, NFXL1, NIPAL1, SLC10A4, GABRB1, FRYL, ZAR1, COMMD8, ATP10D, SLAIN2, TEC, TXK) 0.143507464115323 44 0.0376743796165591 0.909953095313733 1519 0.264987861586496 3 3 0 -6.86799874465242 LTS-024 chr4 48604161 49064107 459947 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.886389115648028 231 0.21043270523635 3 NA NA -5.79318385015996 LTS-024 chr4 52709193 52726822 17630 * DCUN1D4 0.211 1 NA 0.595418352596243 19 0.175281144257344 2 2 0 -5.76597441060259 LTS-024 chr4 52726823 56238886 3512064 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.160900169588818 11 0.104751394002441 0.656722170973582 1657 0.19244858832195 2 2 0 -6.86836627242821 LTS-024 chr4 56238887 69363297 13124411 * c(FTLP10, EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, TMPRSS11B, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, POLR2B, PPAT, UBA6-AS1, LOC550113, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.216907957406746 88 0.0501228363119866 0.606232319995901 3373 0.197270158775984 2 2 0 -7.25769810771272 LTS-024 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.856 1 NA NA NA NA NA LTS-024 chr4 69402959 70391504 988546 * c(UGT2B11, UGT2B28, UGT2B4, UGT2B7, UGT2B17) 0.143678335446527 5 0.0417348775007187 0.93767420621967 296 0.361436041228269 3 3 0 -6.83807792794803 LTS-024 chr4 70391505 70454161 62657 * c(UGT2A1, UGT2A2, UGT2B4) NA 0 NA 0.464 1 NA NA NA NA NA LTS-024 chr4 70454162 80247268 9793107 * c(FAM47E, CSN1S2BP, LINC01094, LINC01088, MIR4450, FAM47E-STBD1, ENAM, CXCL13, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HTN1, HTN3, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, NA NA NA NA NA NA NA NA NA LTS-024 ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, NUP54, PPEF2, PPBP, ODAM, SDAD1, BMP2K, SEPT11, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, STATH, SULT1E1, BTC, LOC728040, FRAS1, NAA11, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.189359829359341 120 0.0636133932086491 0.63692059020114 6927 0.203948299073942 2 2 0 -6.74987540993631 LTS-024 NA NA NA NA LTS-024 chr4 80247269 80327423 80155 * character(0) NA 0 NA 0.821 1 NA NA NA NA NA LTS-024 chr4 80327424 80329479 2056 * GK2 NA 0 NA 0.983213569814319 39 0.109074285375126 4 NA NA -5.76454338086071 LTS-024 chr4 80329480 80822289 492810 * c(LINC00989, PCAT4) NA 0 NA 0.435 1 NA NA NA NA NA LTS-024 chr4 80822290 84391411 3569122 * c(THAP9-AS1, HPSE, HELQ, ANTXR2, LIN54, RASGEF1B, FGF5, SEC31A, C4orf22, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, HNRNPDL) 0.178284558885078 40 0.0709705563723075 0.597206203431451 2031 0.171964215003901 2 2 0 -7.07523785279893 LTS-024 chr4 84391412 84391495 84 * FAM175A NA 0 NA 0.964 1 NA NA NA NA NA LTS-024 chr4 84391496 90168415 5776920 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, C4orf36, PPM1K, TIGD2, DMP1, DSPP, WDFY3, NAP1L5, FAM13A-AS1, GPRIN3, IBSP, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, NKX6-1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, MEPE, KLHL8, PTPN13, SPP1, ARHGAP24, SPARCL1, FAM175A, GPAT3, HERC3, ABCG2) 0.20515965717264 76 0.0618174377828383 0.635420158056025 3554 0.205326941285905 2 2 0 -6.73762314346018 LTS-024 chr4 90168416 90168438 23 * GPRIN3 NA 0 NA 0.803 1 NA NA NA NA NA LTS-024 chr4 90168439 98109018 7940580 * c(PDLIM5, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.199365826446696 31 0.0735151216980532 0.684828723643785 1578 0.209896499999351 2 2 0 -7.25346724361685 LTS-024 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.526 1 NA NA NA NA NA LTS-024 chr4 98480011 110749344 12269334 * c(MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, SGMS2, EIF4E, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, STPG2, H2AFZ, HADH, CFI, PCNAP1, MANBA, MTTP, NFKB1, CISD2, LEF1, EMCN, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, BDH2, INTS12, OSTC, RAP1GDS1, RPL34, SLC39A8, NA NA NA NA NA NA NA NA NA LTS-024 LEF1-AS1, ETNPPL, TACR3, UBE2D3, GSTCD, DNAJB14, CXXC4, PLA2G12A, CASP6, C4orf17, COL25A1, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TRMT10A, TBCK) 0.218862864345215 91 0.0559068211363573 0.623217333588672 5847 0.177194605226308 2 2 0 -6.90957917607398 LTS-024 NA NA NA NA LTS-024 chr4 110749345 110754324 4980 * RRH NA 0 NA 0.859 1 NA NA NA NA NA LTS-024 chr4 110754325 111119866 365542 * c(RRH, EGF, LRIT3, ELOVL6) 0.111761519940548 5 0.0470393452335383 0.909000982854525 399 0.350886870280964 4 4 0 -6.80362557697822 LTS-024 chr4 111119867 111397301 277435 * ENPEP NA 0 NA 0.726 1 NA NA NA NA NA LTS-024 chr4 111397302 142145875 30748574 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, LINC00499, SPRY1, PGRMC2, CLGN, PLK4, PRDM5, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, MGAT4D, SPATA5, BBS12, SYNPO2, ELF2, ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, SLC7A11, ELMOD2, MFSD8, NOCT, INTU, ZNF330, LINC01091, ANK2, ANXA5, IL2, LINC01061, C4orf3, MAD2L1, MGST2, MIR302B, NDUFC1, LARP7, MYOZ2, PITX2, EXOSC9, PCDH18, NA NA NA NA NA NA NA NA NA LTS-024 USP53, LARP1B, BBS7, ZGRF1, AP1AR, MAML3, ANKRD50, RNF150, PCDH10, METTL14, IL21, SCOC, NEUROG2, SLC7A11-AS1, LINC00616, TNRC18P1, CEP170P1, LOC645513, NDST4, SNORA24, MIR577, TRPC3, CETN4P, UCP1, UGT8, NDNF, FAT4, ARSJ, TNIP3, JADE1, NAA15, ABHD18, ALPK1, SETD7, CAMK2D, SLC25A31, RAB33B, QRFPR, KIAA1109, MGARP, PRSS12, PDE5A, CCNA2, TIFA, NDST3, SEC24D) 0.198539115925499 174 0.0572313777801807 0.638072529317391 9241 0.390299620219967 2 2 0 -6.73381931418207 LTS-024 NA NA NA NA LTS-024 chr4 142145876 142147838 1963 * ZNF330 NA 0 NA 1.042 1 NA NA NA NA NA LTS-024 chr4 142147839 142655171 507333 * c(ZNF330, IL15) 0.13734538021145 4 0.00883176086632784 1.05341300079361 105 0.245544413445631 4 4 0 -7.72340518375619 LTS-024 chr4 142655172 142944323 289152 * character(0) NA 0 NA 0.586 1 NA NA NA NA NA LTS-024 chr4 142944324 147858927 4914604 * c(LINC01095, ANAPC10, LSM6, ZNF827, FREM3, MMAA, GAB1, GYPA, GYPB, GYPE, SMAD1, GUSBP5, POU4F2, OTUD4, ABCE1, HHIP, HHIP-AS1, C4orf51, TTC29, SLC10A7, USP38, SMARCA5, INPP4B) 0.22136818202739 34 0.0662696646226451 0.642582899555057 2491 0.201015035376863 2 2 0 -6.80024533342698 LTS-024 chr4 147858928 147860897 1970 * TTC29 NA 0 NA 0.577 1 NA NA NA NA NA LTS-024 chr4 147860898 148803104 942207 * c(MIR4799, EDNRA, TMEM184C, ARHGAP10, TTC29, PRMT9) 0.187259407072195 4 0.128634819029167 0.548928839609589 363 0.135164091885503 2 2 0 -7.35536276170799 LTS-024 chr4 148803105 148827703 24599 * ARHGAP10 NA 0 NA 0.6 1 NA NA NA NA NA LTS-024 chr4 148827704 166199390 17371687 * c(MIR3140, MIR3688-1, LINC01207, APELA, MIR3688-2, MAB21L2, KLHL2, CTSO, SH3D19, FAM218A, C4orf45, DCLK2, TRIM60, RBM46, C4orf46, TIGD4, TMEM154, TMEM192, ETFDH, FGA, FGB, FGG, KIAA0922, TRIM2, ANP32C, GK3P, ARFIP1, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, LOC340017, PRSS48, TRIM61, NR3C2, NPY1R, NPY2R, NPY5R, FAM198B, ASIC5, GATB, PLRG1, DKFZP434I0714, DCHS2, PPID, MARCH1, FBXW7, TMEM144, TMA16, NA NA NA NA NA NA NA NA NA LTS-024 PDGFC, FSTL5, FNIP2, RXFP1, RPS3A, SFRP2, TDO2, TLR2, FAM160A1, ARHGAP10, MAP9, MND1, TKTL2, FHDC1, SNORD73A, LRAT, NAF1, RAPGEF2, LRBA) 0.211850719748266 115 0.0529142449159647 0.642470646459189 6230 0.217886705895721 2 2 0 -6.77915543897795 LTS-024 NA NA NA NA LTS-024 chr4 166199391 166841030 641640 * c(KLHL2, CPE, GK3P, MSMO1, MIR578, TLL1) 0 1 NA 0.649481470079554 225 0.187192379080224 2 2 0 -5.76858261556273 LTS-024 chr4 166841031 167024537 183507 * TLL1 0.161179426222651 4 0.0275439043468181 0.665961639671097 170 0.221508259316336 3 3 0 -6.87948371214199 LTS-024 chr4 167024538 186544337 19519800 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, ANXA10, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, PALLD, CCDC110, FBXO8, PDLIM3, GPM6A, LINC01098, SLC25A4, HMGB2, HPGD, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, CLDN22, HPF1, NEIL3, UFSP2, DDX60, CDKN2AIP, TENM3, LRP2BP, NA NA NA NA NA NA NA NA NA LTS-024 STOX2, CFAP97, SH3RF1, SPCS3, TRAPPC11, SLED1, TLL1, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.123618887427592 113 0.0501403781609582 0.918229333910395 5902 0.308530361955096 4 4 0 -7.8390831942767 LTS-024 NA NA NA NA LTS-024 chr4 186544338 190878661 4334324 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.201334157201041 30 0.0898847537990578 0.983141027052936 1244 0.269580292430025 4 4 0 -7.18276053455704 LTS-024 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.912098812503588 45 1.45139140068412 3 NA NA -5.76468422347737 LTS-024 chr5 140347 140532 186 * PLEKHG4B 0.423 1 NA 1.2889807348273 3 0.218275819396775 5 5 0 -5.76441940305789 LTS-024 chr5 140533 756165 615633 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.371791587636481 65 0.0684368146260026 1.30257892940936 1142 0.381367013504812 6 4 2 -6.75703229092237 LTS-024 chr5 756166 766786 10621 * character(0) NA 0 NA 1.839 1 NA NA NA NA NA LTS-024 chr5 766787 31554226 30787440 * c(SNORD123, LOC100130744, CDH6, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, FBXL7, ICE1, LINC01018, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, SLC6A18, FLJ33360, NA NA NA NA NA NA NA NA NA LTS-024 LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, PMCHL1, FAM134B, FAM105A, NSUN2, C5orf22, ANKH, PRDM9, LINC01021, MRPL36, ANKRD33B, SLC6A3, BRD9, SRD5A1, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.341796659932497 160 0.08845400947641 1.40046458217981 6808 0.444207238885048 6 4 2 -6.76649903549453 LTS-024 NA NA NA NA LTS-024 chr5 31554227 31554230 4 * C5orf22 NA 0 NA 1.573 1 NA NA NA NA NA LTS-024 chr5 31554231 34687105 3132875 * c(MIR4279, SUB1, C1QTNF3, PDZD2, AMACR, RAI14, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, GOLPH3, TARS, ADAMTS12) 0.284223092579073 27 0.0667093026056415 1.71769748384981 1684 0.682430194050395 8 6 2 -6.73901536757306 LTS-024 chr5 34687106 34687644 539 * RAI14 NA 0 NA 1.249 1 NA NA NA NA NA LTS-024 chr5 34687645 36143552 1455908 * c(UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RAI14, IL7R, BRIX1, PRLR, RAD1, AGXT2, SPEF2, LMBRD2) 0.358827916548866 59 0.0638173487658859 1.42310173604782 1762 0.416035150335735 6 4 2 -6.73648514456372 LTS-024 chr5 36143553 36147892 4340 * LMBRD2 NA 0 NA 1.643 1 NA NA NA NA NA LTS-024 chr5 36147893 37049424 901532 * c(NADK2, RANBP3L, NIPBL, NIPBL-AS1, SKP2, SLC1A3, MIR580, LMBRD2) NA 0 NA 1.73652121130515 620 0.392424550886558 8 NA NA -5.76690564219657 LTS-024 chr5 37049425 45259441 8210017 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MRPS30, MROH2B, EGFLAM, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, HCN1, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C5orf42, C6, C7, C9, ZNF131, CARD6, OSMR, NUP155 NA NA NA NA NA NA NA NA NA LTS-024 ) 0.347906720880652 58 0.0942075362755394 1.31698530083684 4499 0.392836048801589 6 4 2 -6.86825995214743 LTS-024 NA NA NA NA LTS-024 chr5 45259442 45696278 436837 * HCN1 NA 0 NA 1.47206889141198 111 0.281697695783959 6 NA NA -5.7724230237174 LTS-024 chr5 49692017 49692043 27 * EMB 0.152 1 NA 0.44 1 NA NA NA NA NA LTS-024 chr5 49692044 66492731 16800688 * c(LRRC70, FAM159B, LOC100303749, MIR449C, MIR5687, IPO11-LRRC70, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MIER3, CDC20B, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, NA NA NA NA NA NA NA NA NA LTS-024 PDE4D, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, CENPK, LOC642366, SMIM15, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, HSPB3, NDUFAF2) 0.205847827250716 145 0.0595159312520348 0.612785058024339 7291 0.182506618834303 2 2 0 -7.16016205866708 LTS-024 NA NA NA NA LTS-024 chr5 67493960 67597153 103194 * PIK3R1 0.138873914416089 3 0.0587905888160115 0.962631956345844 198 0.201179712321462 4 4 0 -6.77106138364321 LTS-024 chr5 67597154 67597366 213 * PIK3R1 NA 0 NA 0.697 1 NA NA NA NA NA LTS-024 chr5 67597367 68862353 1264987 * c(OCLN, CDK7, MARVELD2, CCDC125, PIK3R1, RAD17, SLC30A5, CENPH, TAF9, GTF2H2C, CCNB1, MRPS36) 0.178444268021297 7 0.0704766087503675 0.629251320795863 793 0.226922422341077 2 2 0 -6.79098754809791 LTS-024 chr5 68862354 69373289 510936 * c(NA, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.974790354974061 39 0.274573517903936 4 NA NA -5.77243752135126 LTS-024 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.09 1 NA NA NA NA NA LTS-024 chr5 69717474 70751818 1034345 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, PMCHL2, BDP1, LOC647859, GTF2H2B, SMN1, SMN2, SERF1A) 0.212965557925024 3 0.00888819441731561 0.335188374286838 97 0.145634410968272 2 2 0 -12.6323637879237 LTS-024 chr5 70751819 70751822 4 * BDP1 NA 0 NA 0.549 1 NA NA NA NA NA LTS-024 chr5 70751823 88015902 17264080 * c(CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, CKMT2, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, NA NA NA NA NA NA NA NA NA LTS-024 TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.199795814858241 196 0.0554319574793708 0.628943734857466 8636 0.311719659786197 2 2 0 -6.75001867360428 LTS-024 NA NA NA NA LTS-024 chr5 88015903 90460069 2444167 * c(MIR3660, POLR3G, CETN3, LYSMD3, MBLAC2, MEF2C, ADGRV1) 0.185332978012742 19 0.0360450497854433 0.733200791783281 1149 0.267660741971782 2 2 0 -7.21151076749267 LTS-024 chr5 90460070 94278154 3818085 * c(ARRDC3-AS1, MIR2277, POU5F2, KIAA0825, NR2F1-AS1, ARRDC3, NR2F1, MCTP1, FAM172A, SLF1) 0.219753720287358 14 0.0422080144465063 0.617155941172349 816 0.148915103081719 2 2 0 -6.96237817102641 LTS-024 chr5 94278155 94619626 341472 * MCTP1 NA 0 NA 0.585568893798466 28 0.0935249945371536 2 NA NA -5.9256510309409 LTS-024 chr5 94619627 94749723 130097 * c(FAM81B, MCTP1) 0.145 1 NA 0.963072870535822 43 0.336084916166825 4 4 0 -5.76661959946312 LTS-024 chr5 94749724 96367958 1618235 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, CAST, SPATA9, TTC37) 0.133777289426892 75 0.0313896924609464 0.869118459249016 1801 0.263009393108118 3 3 0 -7.00230260671798 LTS-024 chr5 96367959 96368010 52 * character(0) NA 0 NA 1.125 1 NA NA NA NA NA LTS-024 chr5 96368011 96371142 3132 * character(0) 0.20615405504112 2 0.0841457069611992 1.27625940104065 66 0.376457449992707 7 6 1 -6.7368512146862 LTS-024 chr5 96371143 96371144 2 * character(0) 0.078 1 NA 0.309 1 NA NA NA NA NA LTS-024 chr5 96371145 96518792 147648 * c(LIX1, RIOK2) 0.124670476449645 9 0.0266223590239483 0.939026536971907 283 0.263383639551396 4 4 0 -6.74168313813725 LTS-024 chr5 96518793 96519364 572 * RIOK2 NA 0 NA 0.937214259197449 9 0.0638594376562915 4 NA NA -5.76499963724539 LTS-024 chr5 97912972 98262300 349329 * c(CHD1, RGMB, RGMB-AS1) 0.318 1 NA 0.63660931154515 285 0.177394511264123 2 2 0 -5.76441196008997 LTS-024 chr5 98262301 118965554 20703254 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, NA NA NA NA NA NA NA NA NA LTS-024 LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.19962405473758 146 0.0682938387965711 0.632498709135377 6101 0.209223943464701 2 2 0 -6.74692979667193 LTS-024 NA NA NA NA LTS-024 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 0.93 1 NA NA NA NA NA LTS-024 chr5 118968368 129522346 10553979 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.201173831802961 62 0.0544443908728396 0.671029318330518 3276 0.228484975922767 2 2 0 -7.04607619851771 LTS-024 chr5 130494663 134332018 3837356 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, FNIP1, NA NA NA NA NA NA NA NA NA LTS-024 DDX46) 0.190420785454786 61 0.0534389391603093 0.624917561075116 4494 0.262649694659138 2 2 0 -6.76448312949209 LTS-024 NA NA NA NA LTS-024 chr5 134332019 137087498 2755480 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.181869948558898 39 0.060821778985166 0.699183761677192 1336 0.269483263093148 2 2 0 -6.97771028433779 LTS-024 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.581 1 NA NA NA NA NA LTS-024 chr5 137087505 154267776 17180272 * c(GNPDA1, SRA1, MIR3141, LINC01024, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, KIF20A, G3BP1, APBB3, TNIP1, CDX1, FAXDC2, FAM114A2, BRD8, TCERG1, HNRNPA0, SPINK5, SYNPO, SLC35A4, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, CTNNA1, SLC36A2, SPINK13, JAKMIP2-AS1, ZMAT2, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, HBEGF, EGR1, SPATA24, DNAJC18, STK32A, NA NA NA NA NA NA NA NA NA LTS-024 SLC36A1, ETF1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, LARP1, HARS2, GEMIN5, PCDHGA12, LRRTM2, CCDC69, PCDHB5, GFRA3, SNORD63, SNORA74A, PKD2L2, IL17B, GLRA1, GM2A, RELL2, SLC36A3, GPX3, GRIA1, NR3C1, PCDHB1, HARS, ANXA6, HSPA9, NDST1, HTR4, TMEM173, ARSI, IRGM, IK, DND1, SAP30L-AS1, PROB1, C5orf46, ARHGEF37, SPINK6, ANKHD1-EIF4EBP3, MIR143, SPINK14, MFAP3, NDUFA2, ATOX1, NPY6R, IGIP, PCDH1, PCDHGC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 DCTN4, MZB1, PAIP2, PCDH12, FAM13B, FAM53C, REEP2, PDE6A, LARS, CXXC5, PDGFRB, KDM3B, PFDN1, RBM27, POU4F3, PCDHB18P, PCDHB17P, WDR55, ANKHD1, PPP2R2B, TMCO6, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, NMUR2, KCTD16, PCDHB16, HMHB1, PURA, RPS14, ECSCR, GRXCR2, SPINK9, SIL1, ARAP3, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, SNHG4, CARMN, LOC729080, UBE2D2, WNT8A, PCYOX1L, SH3TC2, SAP30L, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SPRY4, SLC4A9, NME5, SLC25A2, PCDHB19P, PSD2, CYSTM1, SPINK7, SMIM3, EIF4EBP3, PCDHGB4, CDC23, HDAC3, FCHSD1, ZNF300, MYOZ3, CD14, CNOT8, HAND1, MYOT, NRG2, RNF14, PCDHGA8, CD74, PCDHA9, MATR3, KIAA0141, JAKMIP2, CDC25C, SLC23A1) 0.194150252732758 337 0.0575082983303679 0.652658158127222 17780 0.647922347708483 2 2 0 -6.75385546662838 LTS-024 NA NA NA NA LTS-024 chr5 154267777 159991287 5723511 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, GEMIN5, HAVCR1, CYFIP2, LOC285626, LOC285627, KIF4B, MRPL22, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.193893268192593 61 0.0750641547105166 0.619117470782261 2999 0.186493975749266 2 2 0 -6.81555755508153 LTS-024 chr5 159991288 169812555 9821268 * c(FAM196B, MIR103B1, MIR378E, C5orf58, NUDCD2, DOCK2, FOXI1, ATP10B, WWC1, GABRA1, GABRA6, GABRB2, GABRG2, LINC01366, MAT2B, LOC285629, KCNIP1, HMMR, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, SLIT3, MIR585, PANK3, CCNG1) 0.19104366797858 61 0.0745809422030234 0.666820610554908 2758 0.246969666501846 2 2 0 -6.93818443713509 LTS-024 chr5 169812556 169909983 97428 * c(KCNIP1, KCNMB1) NA 0 NA 1.017 1 NA NA NA NA NA LTS-024 chr5 169909984 170884517 974534 * c(MIR3912, GABRP, TLX3, KCNIP1, NPM1, RANBP17, FGF18) 0.108646071100524 16 0.0487469657175364 1.00357612678689 511 0.487948119098158 4 4 0 -6.80067327991784 LTS-024 chr5 170884518 170884568 51 * FGF18 NA 0 NA 0.589 1 NA NA NA NA NA LTS-024 chr5 170884569 179203933 8319365 * c(LOC100268168, MIR4281, LOC100507387, MIR4634, RGS14, CPLX2, LMAN2, B4GALT7, GPRIN1, ZNF354B, CLTB, C5orf47, NKX2-5, CREBRF, DBN1, DRD1, DUSP1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, N4BP3, FAF2, FBXW11, ZNF346, EIF4E1B, TSPAN17, PRELID1, EFCAB9, SH3PXD2B, LOC285593, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, HRH2, PRR7-AS1, PFN3, ZNF879, SIMC1, FLJ16171, MSX2, NA NA NA NA NA NA NA NA NA LTS-024 RPL26L1, DDX41, NOP16, HMP19, UIMC1, RAB24, NEURL1B, FAM193B, TMED9, CDHR2, NHP2, PROP1, KIAA1191, ERGIC1, CLK4, LOC643201, NSD1, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, BNIP1, SNCB, SNORA74B, STK10, ZNF354A, LOC728554, AACSP1, DOK3, ZFP2, RUFY1, CPEB4, PRR7, CANX, MXD3, THOC3, PHYKPL, STC2, FGF18, ATP6V0E1, UNC5A, BOD1, COL23A1, UBTD2, PDLIM7, SFXN1, ADAMTS2, MAML1) 0.191583669464761 154 0.0630104053233834 0.646197584454624 7826 0.190575256543096 2 2 0 -6.77226651120783 LTS-024 NA NA NA NA LTS-024 chr5 179203934 179260726 56793 * c(MIR1229, MGAT4B, LTC4S, SQSTM1, MAML1) NA 0 NA 0.625746043641789 175 0.117263897016575 2 NA NA -5.76518945907203 LTS-024 chr5 179260727 179263452 2726 * SQSTM1 NA 0 NA 0.946 1 NA NA NA NA NA LTS-024 chr5 179263453 179290845 27393 * c(TBC1D9B, C5orf45, SQSTM1) 0.49 1 NA 0.967695347552376 159 0.164413668502877 4 4 0 -5.76603894321329 LTS-024 chr5 179290846 180661256 1370411 * c(MIR4638, HEIH, BTNL3, OR2Y1, BTNL9, TBC1D9B, FLT4, RASGEF1C, OR2V1, OR2V2, MGAT1, MIR340, RNF130, MAPK9, CNOT6, ZFP62, LINC00847, BTNL8, TRIM7, TRIM41, SCGB3A1, GFPT2) 0.433564243926159 44 0.102435260326411 1.00080504100184 1611 0.276248056246673 4 2 2 -6.73687591813573 LTS-024 chr5 180661257 180688111 26855 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 0.993056604531344 163 0.164700211477348 4 NA NA -5.76480842136224 LTS-024 chr6 203389 335251 131863 * DUSP22 0.316 1 NA 0.823050528055932 33 0.143195180954126 3 3 0 -5.76455025778113 LTS-024 chr6 335252 351343 16092 * DUSP22 0.342082249312228 6 0.0337367257846203 0.77250460890724 77 0.153264685788261 6 4 2 -7.09220826460289 LTS-024 chr6 351344 367262 15919 * DUSP22 NA 0 NA 1.104 1 NA NA NA NA NA LTS-024 chr6 367263 408079 40817 * IRF4 0.352003934334298 3 0.162755440257256 1.02796411026237 73 0.323848385261105 6 4 2 -6.7579655885431 LTS-024 chr6 408080 408246 167 * IRF4 0.119 1 NA 1.43989427606926 3 0.880054733146373 6 6 0 -5.76441022971039 LTS-024 chr6 408247 6318966 5910720 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, FARS2, RPP40, HUS1B, LINC01600, SERPINB1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.114785750361073 60 0.0425207526600795 0.972876132743395 2491 0.333022825763654 4 4 0 -6.8358339384298 LTS-024 chr6 6318967 6320805 1839 * F13A1 NA 0 NA 1.565 1 NA NA NA NA NA LTS-024 chr6 6320806 7881753 1560948 * c(BLOC1S5-TXNDC5, SNRNP48, DSP, F13A1, LY86-AS1, CAGE1, RREB1, BMP6, SSR1, TXNDC5, RIOK1, LY86) 0.0632418945963961 21 0.0222766159693886 1.74375973435013 1119 0.512969543314246 9 9 0 -6.78958956928436 LTS-024 chr6 7881754 29641329 21759576 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, LOC100506207, ELOVL2-AS1, LINC01012, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, CAP2, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, MBOAT1, HDGFL1, E2F3, EDN1, PIP5K1P1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, NA NA NA NA NA NA NA NA NA LTS-024 LINC00518, ZSCAN23, NKAPL, TOB2P1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, GCNT2, GMPR, GPLD1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, ZNF391, C6orf52, KAAG1, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, STMND1, CASC15, ERVFRD-1, MAK, NEDD9, HCG11, SLC35B3, GMNN, TBC1D7, NOL7, FAM8A1, DCDC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, ZNF192P1, BMP6, SLC17A1, SOX4, MIR548A1, BTN1A1, TFAP2A, TPMT, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 ZSCAN12, KIAA0319, NUP153) 0.120282786139121 326 0.0459777729092973 0.982159219544341 11537 0.358101344877688 4 4 0 -6.87516494183157 LTS-024 NA NA NA NA LTS-024 chr6 29641330 29691019 49690 * character(0) 0.18 1 NA 0.857611257918361 31 0.216631692793508 3 3 0 -5.76519301992988 LTS-024 chr6 29691020 29910396 219377 * character(0) 0.180434546313328 23 0.0842632802308153 0.861237730870915 183 0.325563992432822 3 3 0 -6.7939507242367 LTS-024 chr6 29910397 29910429 33 * character(0) 0.066 1 NA 0.048 1 NA NA NA NA NA LTS-024 chr6 29910430 29910508 79 * character(0) 0.110878739803127 7 0.024831815230044 0.252080459002545 9 0.513776567304418 14 13 1 -6.73858054223038 LTS-024 chr6 29910509 29910700 192 * character(0) 0.269 1 NA 0.617502783641302 3 0.517223678241178 2 2 0 -5.7644105462193 LTS-024 chr6 29910701 29912108 1408 * character(0) 0.273311328534361 18 0.0935854438153586 0.466487993051498 28 0.397558587742525 1 1 0 -6.74354976161841 LTS-024 chr6 29912109 29912147 39 * character(0) 0.171 1 NA 0.234 1 NA NA NA NA NA LTS-024 chr6 29912148 29912398 251 * character(0) 0.158842333608562 4 0.00953502316025854 0.451040921210875 6 0.443875846005014 9 8 1 -6.77507782453507 LTS-024 chr6 29912399 29912413 15 * character(0) NA 0 NA 1.103 1 NA NA NA NA NA LTS-024 chr6 29912414 30460445 548032 * character(0) 0.148053532502491 46 0.0320490264535189 0.968611437127126 759 0.236024798950406 3 3 0 -6.89455387333729 LTS-024 chr6 30460446 30509203 48758 * character(0) NA 0 NA 1.285 1 NA NA NA NA NA LTS-024 chr6 30509204 30689887 180684 * character(0) 0.0988072872666446 44 0.027688036738554 1.24358726282679 1163 0.32912083582427 5 5 0 -6.76657266119461 LTS-024 chr6 30689888 30690396 509 * character(0) NA 0 NA 1.658 1 NA NA NA NA NA LTS-024 chr6 30690397 30697931 7535 * character(0) 0.0673395103654943 5 0.0214546032356695 1.77477737420656 69 0.598348097213524 9 9 0 -6.74327050336806 LTS-024 chr6 30697932 30711357 13426 * character(0) 0.031 1 NA 1.94817641002799 57 0.290844732669002 9 9 0 -5.76442731652665 LTS-024 chr6 30711358 30711568 211 * character(0) NA 0 NA 1.71328500269309 7 0.669892457609357 8 NA NA -5.76441058684565 LTS-024 chr6 30711569 30711665 97 * character(0) NA 0 NA 1.418 1 NA NA NA NA NA LTS-024 chr6 30711666 31238538 526873 * character(0) 0.0866761422976984 95 0.0312273102398402 1.35294491639716 1187 0.630358372250014 6 6 0 -6.74520389058477 LTS-024 chr6 31238539 31238930 392 * character(0) 0.391 1 NA 1.33681347636483 6 0.630645198718476 6 6 0 -5.76441144283818 LTS-024 chr6 31238931 31239016 86 * character(0) 0.017 1 NA 1.29190464000339 4 0.871490868187001 5 5 0 -5.76441042132909 LTS-024 chr6 31239017 31239050 34 * character(0) 0.416 1 NA 0.527 1 NA NA NA NA NA LTS-024 chr6 31239051 32427748 1188698 * character(0) 0.125500982342358 194 0.0704790981004733 1.02728119322797 4716 0.315828576354957 4 4 0 -6.73351212833299 LTS-024 chr6 32427749 32489639 61891 * HLA-DRB5 0.39 1 NA 0.455014550564419 21 0.503526312737525 1 1 0 -5.76447063676309 LTS-024 chr6 32489640 32498118 8479 * HLA-DRB5 0.339190773757007 8 0.0623211727379112 0.755065920996293 32 0.623821440410739 15 10 5 -6.76744684043877 LTS-024 chr6 32498119 32546458 48340 * HLA-DRB5 0.122 1 NA 2.01 1 NA NA NA NA NA LTS-024 chr6 32546459 32557617 11159 * HLA-DRB5 0.307876934700231 50 0.14840972518879 1.52549402153316 114 1.61464011324855 4 3 1 -6.73400725873486 LTS-024 chr6 32557618 32605164 47547 * character(0) 0.119 1 NA 1.78923978727387 3 1.1614914262849 8 8 0 -5.76441035760088 LTS-024 chr6 32605165 32610947 5783 * HLA-DQA1 0.0625126559248268 38 0.0246726505883636 1.94768101097605 86 1.35947515708673 9 9 0 -6.73713438622628 LTS-024 chr6 32610948 32610960 13 * HLA-DQA1 0.061 1 NA 5.51 1 NA NA NA NA NA LTS-024 chr6 32610961 32634490 23530 * HLA-DQA1 0.0708043521369619 68 0.0287320276305851 2.13787972011795 138 1.58429028015417 8 8 0 -6.73353272234804 LTS-024 chr6 32634491 32634501 11 * character(0) NA 0 NA 1.241 1 NA NA NA NA NA LTS-024 chr6 32634502 32795032 160531 * character(0) 0.0872942701955291 14 0.0448144526334436 1.0145414793839 181 0.470196979607139 6 6 0 -6.78210577385813 LTS-024 chr6 32795033 32796019 987 * character(0) 0.092 1 NA 0.693863629127041 22 0.339748853640132 2 2 0 -5.76444768501733 LTS-024 chr6 32796020 32818774 22755 * character(0) 0.155175827326885 24 0.0821426714823719 0.877597010220848 198 0.324278648978396 3 3 0 -6.73361780673016 LTS-024 chr6 32818775 32916421 97647 * character(0) 0.102 1 NA 0.900681818477605 133 0.206070657716589 3 3 0 -5.77415428186629 LTS-024 chr6 32916422 33035512 119091 * character(0) 0.108830295939168 18 0.0387918864908158 1.01636701912085 270 1.31118192144736 5 5 0 -6.7392639910977 LTS-024 chr6 33035513 33054760 19248 * character(0) 0.139401628867577 5 0.0111892805845595 2.13901249183356 127 22.1722665506136 18 16 2 -6.74290264615649 LTS-024 chr6 33054761 41158132 8103372 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, APOBEC2, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, DAAM2, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, NA NA NA NA NA NA NA NA NA LTS-024 TREML1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, LINC00951, MLN, MOCS1, GGNBP1, RPL10A, NFYA, DEF6, ETV7, PPIL1, PIM1, TREM2, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, LRFN2, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, TDRG1, ZNF76, TREML2, KCNK16, UQCC2, KCNK5, KCNK17, RNF8) 0.109867561452117 200 0.0311937529984876 1.0252579592087 9214 0.289618517682452 4 4 0 -6.87372827640393 LTS-024 NA NA NA NA LTS-024 chr6 41158133 41158856 724 * TREML2 0.193 1 NA 0.861791270793183 15 0.274730222651413 3 3 0 -5.76441931641936 LTS-024 chr6 41158857 41159532 676 * TREML2 0.204 1 NA 0.862824628301322 15 0.289382709194852 3 3 0 -5.76441833097311 LTS-024 chr6 41159533 43582703 2423171 * c(TOMM6, MIR4641, DNPH1, CNPY3, FRS3, SLC22A7, FOXP4, KLHDC3, TAF8, PTCRA, LRRC73, TREML5P, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML3P, CRIP3, MDFI, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, PGC, TREM1, POLH, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, DLK2, SRF, TBCC, BYSL, TFEB, TREML2, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, NA NA NA NA NA NA NA NA NA LTS-024 NCR2, MED20, POLR1C, CUL7) 0.182456240170361 48 0.0651353711743027 0.637311850250472 4703 0.18381512559374 2 2 0 -6.77642418990726 LTS-024 NA NA NA NA LTS-024 chr6 43582704 43583280 577 * POLH NA 0 NA 1.01 1 NA NA NA NA NA LTS-024 chr6 43583281 50811238 7227958 * c(LINC01512, ANKRD66, MIR4647, MIR4642, RCAN2, CRISP3, CAPN11, C6orf141, CRISP1, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, GLYATL3, MEP1A, TMEM151B, PTCHD4, MUT, NFKBIE, CYP39A1, PGK2, CLIC5, POLH, GTPBP2, CENPQ, MRPS18A, TMEM63B, AARS2, ENPP5, RHAG, MRPL14, MIR586, TFAP2B, CRISP2, NA NA NA NA NA NA NA NA NA LTS-024 VEGFA, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, MAD2L1BP, CDC5L) 0.200551045485456 84 0.0574319460579015 0.673195330889843 4049 0.192757526070097 2 2 0 -7.07097522101945 LTS-024 NA NA NA NA LTS-024 chr6 50811239 53516444 2705206 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, TFAP2B, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.209074896139829 50 0.0564851036891631 0.612545548502079 1866 0.215887368773547 2 2 0 -6.80102025720092 LTS-024 chr6 53516445 53516450 6 * KLHL31 NA 0 NA 0.808 1 NA NA NA NA NA LTS-024 chr6 53516451 56569284 3052834 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, KLHL31, HMGCLL1, LRRC1, BMP5, DST, COL21A1, MLIP) 0.227965802579965 32 0.0717071145860581 0.669393705008972 1850 0.179073937698671 2 2 0 -6.96055073698096 LTS-024 chr6 56569285 56599930 30646 * DST NA 0 NA 0.88 1 NA NA NA NA NA LTS-024 chr6 56599931 57054843 454913 * c(BEND6, ZNF451, RAB23, KIAA1586, DST, BAG2) 0.143790809890239 8 0.0278256690331582 0.98052612771333 552 0.230824006367098 3 3 0 -6.95383292763448 LTS-024 chr6 57054844 57244672 189829 * c(RAB23, PRIM2) 0.337 1 NA 0.918068690221592 51 0.133769954714479 3 3 0 -5.83148010209045 LTS-024 chr6 57244673 58445594 1200922 * c(GUSBP4, PRIM2) 0.31182426868633 43 0.085808150893082 1.07646393431622 126 0.519296613959538 4 3 1 -6.74105748302409 LTS-024 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.492 1 NA NA NA NA NA LTS-024 chr6 62390154 62407067 16914 * KHDRBS2 0.169 1 NA 0.764966380094373 23 0.211979080181943 3 3 0 -5.76582679497412 LTS-024 chr6 62407068 73952150 11545083 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.209256102794594 52 0.048858905889983 0.640543037718151 2708 0.184591611392787 2 2 0 -6.76078290515622 LTS-024 chr6 73952151 73952249 99 * KHDC1 NA 0 NA 0.599 1 NA NA NA NA NA LTS-024 chr6 73952250 74472662 520413 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.195508241550431 25 0.0564173436690054 0.56268700223673 666 0.159005192332775 2 2 0 -6.92089111095295 LTS-024 chr6 74472663 74473225 563 * CD109 NA 0 NA 0.802 1 NA NA NA NA NA LTS-024 chr6 74473226 83949261 9476036 * c(HMGN3-AS1, LOC100506804, RWDD2A, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.213467083711988 54 0.0618041020487226 0.641581925748155 3274 0.178471612029723 2 2 0 -6.77062849681164 LTS-024 chr6 83949262 84388467 439206 * c(PRSS35, ME1, SNAP91) 0.159 1 NA 0.688141416456476 245 0.178114633545848 2 2 0 -5.81365648785746 LTS-024 chr6 84388468 84400244 11777 * SNAP91 NA 0 NA 0.631921529111588 7 0.0442374545035356 2 NA NA -5.76463628244836 LTS-024 chr6 84400245 84417490 17246 * SNAP91 NA 0 NA 1.011 1 NA NA NA NA NA LTS-024 chr6 84417491 84800594 383104 * c(MRAP2, RIPPLY2, CYB5R4, SNAP91) 0.176 1 NA 1.05315396170994 168 0.390315762734857 4 4 0 -5.7660390161853 LTS-024 chr6 84800595 84800609 15 * MRAP2 NA 0 NA 0.661 1 NA NA NA NA NA LTS-024 chr6 84800610 117870130 33069521 * c(LIN28B-AS1, TRAPPC3L, TSTD3, MIR2113, LOC100422737, MIR4464, MIR4643, LOC100996634, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, CGA, PNRC1, ASCC3, BVES, SEC63, GTF3C6, KLHL32, SLC16A10, CNR1, COL10A1, PM20D2, SRSF12, CFAP206, BVES-AS1, AIM1, EPHA7, C6orf163, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, GPRC6A, RFX6, CEP162, ANKRD6, ZNF292, FOXO3, CDK19, MDN1, TSPYL4, UFL1, ORC3, FRK, VGLL2, LACE1, NA NA NA NA NA NA NA NA NA LTS-024 FYN, MMS22L, FAM26E, SCML4, GABRR1, GABRR2, PNISR, AMD1, FBXL4, SNORD50A, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, HTR1E, RSPH4A, GJB7, KPNA5, SNHG5, LINC00222, LIN28B, LAMA4, MARCKS, FAM26F, GSTM2P1, RFPL4B, NT5E, TUBE1, C6orf203, CDC40, RWDD1, UBE2J1, COQ3, POU3F2, SOBP, AKIRIN2, QRSL1, PREP, RARS2, PDSS2, GOPC, SMIM8, LYRM2, SNX14, HACE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 BEND3, RRAGD, PRDM13, REV3L, BACH2, ROS1, FAM229B, PRDM1, LINC01590, POPDC3, TSG1, TRAF3IP2-AS1, MICAL1, SIM1, SMPD2, MAP3K7, SNORD50B, NR2E1, TSPYL1, MCHR2-AS1, TPI1P3, METTL24, MANEA, GPR63, SPACA1, ARMC2, RPF2, MCHR2, FAXC, GJA10, RTN4IP1, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, CCNC, WASF1, TBX18, MFSD4B, FHL5, ATG5, ZBTB24, FIG4, CASP8AP2) 0.130875349150045 250 0.0531500452420969 0.890256258227465 14107 0.335509912663514 3 3 0 -7.65011373961903 LTS-024 NA NA NA NA LTS-024 chr6 117870131 121624921 3754791 * c(LOC100287632, NUS1, TBC1D32, SLC35F1, BRD7P3, MCM9, ASF1A, DCBLD1, LOC285762, CEP85L, MAN1A1, PLN, GOPC, MIR548B, FAM184A) 0.153852512778599 29 0.042464560709563 0.832153535706741 1142 0.212103282846534 3 3 0 -6.73426819862743 LTS-024 chr6 121624922 121625458 537 * TBC1D32 NA 0 NA 1.044 1 NA NA NA NA NA LTS-024 chr6 121625459 127768916 6143458 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, SOGA3, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.127975729318409 35 0.0506212995327713 0.954216306507442 2080 0.458132870753019 4 4 0 -6.81012870758631 LTS-024 chr6 127768917 127770959 2043 * c(SOGA3, KIAA0408) NA 0 NA 0.694 1 NA NA NA NA NA LTS-024 chr6 127770960 147525807 19754848 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, CITED2, HBS1L, RAB32, MTFR2, TMEM200A, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, NA NA NA NA NA NA NA NA NA LTS-024 IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, SOGA3, THEMIS, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LTV1, REPS1, PEX3, STX11, VNN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.14361275733313 151 0.0431985099080761 0.874921223721788 9284 0.320675593419935 3 3 0 -7.09761447452117 LTS-024 NA NA NA NA LTS-024 chr6 147525808 148701175 1175368 * c(STXBP5, SASH1, SAMD5) 0.121394676318716 10 0.0525933033337473 1.13751198455578 313 0.395114238556129 4 4 0 -6.78998770212163 LTS-024 chr6 148701176 148709960 8785 * SASH1 NA 0 NA 0.809 1 NA NA NA NA NA LTS-024 chr6 148709961 150210400 1500440 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, TAB2, SASH1, ZC3H12D, NUP43, SUMO4, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.127084074839583 29 0.0423053060059392 0.863159397556438 1170 0.214360776147279 3 3 0 -6.99822373503136 LTS-024 chr6 150210401 150210534 134 * c(RAET1E-AS1, RAET1E) NA 0 NA 1.075 1 NA NA NA NA NA LTS-024 chr6 150210535 150210685 151 * c(RAET1E-AS1, RAET1E) 0.16202823143054 2 0.00282842712474619 1.55838650109658 4 0.78211012651672 9 8 1 -6.76994740041171 LTS-024 chr6 150210686 150212150 1465 * c(RAET1E-AS1, RAET1E) 0.08 1 NA 1.0753257251918 17 0.472394494912387 4 4 0 -5.76442148369719 LTS-024 chr6 150212151 151005002 792852 * c(RAET1E-AS1, RAET1E, RAET1L, RAET1G, IYD, PLEKHG1, RAET1K, ULBP3, ULBP2, ULBP1, PPP1R14C) 0.0957397688384657 7 0.0482276348363131 1.00478948532061 404 0.326535558351982 5 5 0 -6.9070206658251 LTS-024 chr6 151005003 151054673 49671 * PLEKHG1 NA 0 NA 1.914 1 NA NA NA NA NA LTS-024 chr6 151054674 155155206 4100533 * c(CNKSR3, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, OPRM1, MTRF1L, RMND1, PLEKHG1, ZBTB2, VIP, ARMT1, CCDC170, MYCT1, AKAP12) 0.0760774878159715 51 0.0391001228622512 1.59361644845159 2830 1.070324000858 7 7 0 -6.73917759392461 LTS-024 chr6 155155207 155448580 293374 * TIAM2 NA 0 NA 0.792 1 NA NA NA NA NA LTS-024 chr6 155448581 157712668 2264088 * c(MIR4466, TIAM2, CLDN20, NOX3, TFB1M, ARID1B, TMEM242) 0.0977788412596052 5 0.0598807147585932 0.891530374042479 599 0.257768690813525 4 4 0 -7.19990873999438 LTS-024 chr6 157712669 157713777 1109 * TMEM242 0.174 1 NA 0.755071053296211 31 0.359645043048347 3 3 0 -5.76445385701088 LTS-024 chr6 157713778 167787605 10073828 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, PNLDC1, C6orf118, OSTCP1, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, PARK2, SNX9, MPC1, PLG, UNC93A, AGPAT4, TULP4, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, NA NA NA NA NA NA NA NA NA LTS-024 SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.145567011544211 107 0.0606022237100539 0.896245444959959 5525 0.646511930826843 3 3 0 -6.83359701189097 LTS-024 NA NA NA NA LTS-024 chr6 167787606 167794761 7156 * TCP10 0.223859221126002 6 0.105183015105418 0.590527612560944 93 0.646716273045152 6 5 1 -6.74132813397989 LTS-024 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.17 1 NA NA NA NA NA LTS-024 chr6 167796265 169115483 1319219 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, FRMD1) 0.173115179978175 28 0.106457060921791 0.957960845222343 832 0.258173288254728 4 4 0 -6.8981119374748 LTS-024 chr6 169615866 170190659 574794 * c(WDR27, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, THBS2, LINC00574) 0.136859166703858 17 0.0474866854404226 0.843087459736243 571 0.203893593359311 3 3 0 -6.8118396511769 LTS-024 chr6 170190660 170893599 702940 * c(MIR4644, LOC154449, DLL1, LINC00242, PDCD2, PSMB1, TBP, LINC00574, FAM120B) NA 0 NA 0.837292290797494 389 0.159185011295883 3 NA NA -5.76647100607327 LTS-024 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.115 1 NA 0.975886249234107 125 0.200097570393594 4 4 0 -5.76829263238975 LTS-024 chr7 331087 5938049 5606963 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, NA NA NA NA NA NA NA NA NA LTS-024 MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.124355419052009 133 0.0404459280004855 0.979592735143464 5257 0.284689428239168 4 4 0 -6.79742240152409 LTS-024 NA NA NA NA LTS-024 chr7 5938050 6018360 80311 * c(RSPH10B, CCZ1, PMS2) 0.110109164567445 4 0.0170171482138851 0.668993888266431 141 0.427410579116651 5 5 0 -6.87187037788723 LTS-024 chr7 6018361 6022539 4179 * PMS2 NA 0 NA 1.078 1 NA NA NA NA NA LTS-024 chr7 6022540 6821140 798601 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.13478222738299 28 0.0309820523228783 0.931630259313564 1313 0.261883873996122 4 4 0 -6.84758973009759 LTS-024 chr7 6821141 6825552 4412 * RSPH10B2 NA 0 NA 1.212 1 NA NA NA NA NA LTS-024 chr7 6825553 6863802 38250 * c(CCZ1B, RSPH10B2) 0.269842957745095 3 0.208985645440064 1.47451402401061 72 0.512358546263822 5 4 1 -6.73704987480793 LTS-024 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.877 1 NA NA NA NA NA LTS-024 chr7 6864270 30673735 23809466 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, DKFZP586I1420, MTURN, NA NA NA NA NA NA NA NA NA LTS-024 PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, FKBP14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.138845961282812 230 0.0519805582092461 0.979359767323588 9685 0.340154582609693 4 4 0 -6.96440919061041 LTS-024 NA NA NA NA LTS-024 chr7 30673736 30692198 18463 * CRHR2 NA 0 NA 1.146 1 NA NA NA NA NA LTS-024 chr7 30692199 31825903 1133705 * c(INMT-FAM188B, PPP1R17, INMT, ADCYAP1R1, CRHR2, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.112848138175974 26 0.0413880882157396 1.13637031846864 997 0.428355670735889 5 5 0 -6.76757530413009 LTS-024 chr7 31825904 38293058 6467155 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, TBX20, RP9, HERPUD2, SFRP4, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7) 0.123249948072537 55 0.0414629200295124 0.969847823587775 2657 0.547891969961523 4 4 0 -6.76570408948962 LTS-024 chr7 38293059 38295885 2827 * TARP NA 0 NA 1.112 1 NA NA NA NA NA LTS-024 chr7 38295886 38402781 106896 * c(TRG-AS1, TARP) 0.134648289589431 4 0.123372065990104 1.34343775186681 104 1.2386112442626 4 4 0 -6.73986049837597 LTS-024 chr7 38402782 38402860 79 * TRG-AS1 NA 0 NA 0.997 1 NA NA NA NA NA LTS-024 chr7 38402861 45750311 7347451 * c(MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, YKT6, ADCY1, POU6F2, MPLKIP, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, FAM183BP, LINC00265, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, YAE1D1, PURB, MYL7, RALA, MYO1G, BLVRA, LOC646999, MRPS24, MRPL32, SNORA5B, SNORA5C, NA NA NA NA NA NA NA NA NA LTS-024 SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, POLR2J4, CDK13, TBRG4, STK17A, H2AFV) 0.125335184206871 84 0.0366939162292425 0.970288680680428 4636 0.512270604535013 4 4 0 -6.77328183189915 LTS-024 NA NA NA NA LTS-024 chr7 45750312 45753278 2967 * ADCY1 NA 0 NA 1.253 1 NA NA NA NA NA LTS-024 chr7 45753279 47440581 1687303 * c(ADCY1, IGFBP1, IGFBP3, SEPT7P2, TNS3) 0.112433411080557 14 0.0286743749752245 1.08531695490299 543 0.284347464918701 4 4 0 -6.8959310129579 LTS-024 chr7 47440582 47445045 4464 * TNS3 NA 0 NA 1.408 1 NA NA NA NA NA LTS-024 chr7 47445046 47701253 256208 * c(C7orf65, TNS3) 0.100480755315837 3 0.0185831464863551 1.40565858732612 148 0.305423727603104 5 5 0 -6.8098127758119 LTS-024 chr7 47701254 47814295 113042 * c(PKD1L1, LINC00525) NA 0 NA 2.142 1 NA NA NA NA NA LTS-024 chr7 47814296 47937814 123519 * c(PKD1L1, C7orf69) 0.0687672503968898 2 0.000707106781186548 1.99426369352275 251 0.7448818880998 8 8 0 -10.8278825616308 LTS-024 chr7 47937815 47941992 4178 * PKD1L1 NA 0 NA 1.32 1 NA NA NA NA NA LTS-024 chr7 47941993 49546145 1604153 * c(C7orf57, ABCA13, CDC14C, PKD1L1, SUN3, HUS1, UPP1) 0.09914352919941 16 0.0514470601686821 1.30621287552281 884 0.476551060854784 5 5 0 -6.76621316467265 LTS-024 chr7 49546146 55755583 6209438 * c(DDC-AS1, C7orf72, EGFR-AS1, IKZF1, ZPBP, DDC, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, GRB10, HPVC1, FKBP9P1, VWC2, LINC01446, LANCL2, FIGNL1, VOPP1) 0.123732574569969 55 0.0425858847008909 0.960933003712992 1751 0.29677159997054 4 4 0 -6.87629192054658 LTS-024 chr7 55755584 57533232 1777649 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, CCT6A, ZNF479) NA 0 NA 0.93202593419827 684 0.235617641444464 4 NA NA -5.91390922472754 LTS-024 chr7 62758725 63023528 264804 * ZNF733P 0.482 1 NA 1.23808668680735 7 0.475260580153266 5 5 0 -5.76477541967306 LTS-024 chr7 63023529 64539088 1515560 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.122587591919186 28 0.0642044518722155 0.932432916195192 609 0.329091500647033 4 4 0 -6.79951596850786 LTS-024 chr7 64539089 64639758 100670 * character(0) NA 0 NA 0.672 1 NA NA NA NA NA LTS-024 chr7 64639759 65084068 444310 * ZNF92 0.124228453220932 3 0.0597187854308285 0.565549483297686 88 0.216743030209049 3 3 0 -7.60611618481714 LTS-024 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 0.973 1 NA NA NA NA NA LTS-024 chr7 65150661 73536845 8386185 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, GTF2IRD1P1, NA NA NA NA NA NA NA NA NA LTS-024 FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, POM121) 0.116356965487681 65 0.040439472814794 0.982990322956513 3040 0.321128637449733 4 4 0 -6.82340100075728 LTS-024 NA NA NA NA LTS-024 chr7 73536846 73588476 51631 * LIMK1 NA 0 NA 1.814 1 NA NA NA NA NA LTS-024 chr7 73588477 75696760 2108284 * c(POM121C, MIR4651, CCL26, NSUN5P1, GTF2I, GTF2IP1, HIP1, TRIM73, NA, GTF2IRD2B, MDH2, STAG3L2, SPDYE5, STYXL1, PMS2P5, PMS2P3, STAG3L1, POR, RHBDD2, RFC2, CCL24, NCF1, NCF1C, SNORA14A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, RCC1L, TMEM120A, GTF2IRD2, GTF2IRD1) 0.0987770048590018 23 0.0639987956902501 1.30155590151766 1454 0.315088880946111 5 5 0 -6.80599988402794 LTS-024 chr7 75696761 75696765 5 * character(0) NA 0 NA 1.139 1 NA NA NA NA NA LTS-024 chr7 75696766 76111994 415229 * c(DTX2, SSC4D, SRRM3, HSPB1, FDPSP2, YWHAG, ZP3) 0.0932556859000773 8 0.0238851418249924 1.18187426845706 370 0.349052915768224 6 6 0 -6.79734943892382 LTS-024 chr7 76111995 76112249 255 * DTX2 0.422 1 NA 1.26999445806871 7 0.426212332506877 5 5 0 -5.7644120864915 LTS-024 chr7 76112250 76144773 32524 * c(DTX2, UPK3B) 0.164311095411425 3 0.0297377425729213 1.09489503153101 72 0.268099149844055 3 3 0 -6.82706763886057 LTS-024 chr7 76144774 76239335 94562 * c(LOC100133091, POMZP3, UPK3B) NA 0 NA 1.639 1 NA NA NA NA NA LTS-024 chr7 76239336 76633500 394165 * c(LOC100133091, POMZP3, DTX2P1-UPK3BP1-PMS2P11) 0.176691090540189 7 0.171752590609144 1.28043984640028 82 0.390977040529259 6 5 1 -6.79724230126856 LTS-024 chr7 76633501 76634198 698 * DTX2P1-UPK3BP1-PMS2P11 0.133 1 NA 1.19428510740337 7 0.334873039196876 5 5 0 -5.76441078744512 LTS-024 chr7 76634199 86506499 9872301 * c(PMS2P9, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, FGL2, RSBN1L, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, CACNA2D1, TMEM60, CD36, SEMA3E, MAGI2) 0.0985557942227439 42 0.0404968847829019 1.37482171710008 2863 0.381621806739917 6 6 0 -6.76888016792349 LTS-024 chr7 86506500 89865852 3359353 * c(DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, STEAP2, STEAP1, DPY19L2P4, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, DMTF1) 0.0953690091424227 24 0.025937180240739 1.26822398369882 2035 0.389238857187023 5 5 0 -6.84875284036657 LTS-024 chr7 89865853 91625350 1759498 * c(LOC101409256, AKAP9, STEAP2, CDK14, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.102144194025136 19 0.0475526793140147 1.07597211095149 729 0.34954505045975 5 5 0 -6.85275488885686 LTS-024 chr7 91625351 93625700 2000350 * c(MIR4652, AKAP9, CDK6, BET1, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, TFPI2, CALCR, RBM48, NA, KRIT1) 0.124180148700768 30 0.0305863954431851 0.950582545967363 2175 0.22954967481969 4 4 0 -6.84188027309533 LTS-024 chr7 93625701 93628493 2793 * BET1 NA 0 NA 1.081 1 NA NA NA NA NA LTS-024 chr7 93628494 99260603 5632110 * c(GS1-259H13.2, MIR3609, LOC100506136, ATP5J2-PTCD1, ARPC1B, SLC25A13, BET1, ARPC1A, CPSF4, PDAP1, COL1A2, CYP3A5, BHLHA15, DLX5, DLX6, DYNC1I1, ZSCAN25, FAM200A, TMEM130, LMTK2, PEG10, ZKSCAN5, BRI3, TECPR1, PTCD1, DLX6-AS1, ZNF789, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, ZNF655, SHFM1, TRRAP, ZNF394, MYH16, NA NA NA NA NA NA NA NA NA LTS-024 BUD31, SGCE, ATP5J2) 0.11331772331311 80 0.0322279632295318 1.03115800624559 4269 0.274344940120724 4 4 0 -6.81750791152874 LTS-024 NA NA NA NA LTS-024 chr7 99260604 99261607 1004 * c(CYP3A5, ZSCAN25) NA 0 NA 0.89 1 NA NA NA NA NA LTS-024 chr7 99261608 100146527 884920 * c(MIR4658, CYP3A7-CYP3A51P, STAG3, COPS6, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, AZGP1P1, CYP3A43, TAF6, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRIM4, AP4M1) 0.108447544141895 54 0.0332236823333111 0.983203918354829 2080 0.309791072359596 4 4 0 -6.88608898543526 LTS-024 chr7 100146528 100549499 402972 * c(PCOLCE-AS1, SAP25, POP7, EPHB4, EPO, FBXO24, GNB2, AGFG2, UFSP1, LRCH4, ACHE, PCOLCE, ACTL6B, SRRT, SLC12A9, MOSPD3, GIGYF1, TFR2, TRIP6, ZAN) 0.106250633567479 38 0.0213413128894727 1.10117875615296 1611 2.40601872837593 5 5 0 -6.73459497435218 LTS-024 chr7 100549500 100549505 6 * character(0) 0.203 1 NA 2.423 1 NA NA NA NA NA LTS-024 chr7 100549506 100549516 11 * character(0) 0.204967042402022 2 0.00424264068711927 2.34939255365637 2 0.0919238815542511 12 10 2 -7.45105902508267 LTS-024 chr7 100549517 100549573 57 * character(0) 0.295 1 NA 1.943 1 NA NA NA NA NA LTS-024 chr7 100549574 100550191 618 * character(0) 0.387602327745594 22 0.0344790858247048 2.05159285629819 37 0.709169521278171 8 5 3 -6.73607021444827 LTS-024 chr7 100550192 100550203 12 * character(0) 0.103 1 NA 2.68 1 NA NA NA NA NA LTS-024 chr7 100550204 100550490 287 * character(0) 0.255837800793711 8 0.0953234156512899 2.08390824109157 18 0.708461898367095 13 10 3 -6.73305525916291 LTS-024 chr7 100550491 100550504 14 * character(0) NA 0 NA 1.449 1 NA NA NA NA NA LTS-024 chr7 100550505 100551220 716 * character(0) 0.255008479996851 10 0.107046459280279 0.705099926182848 39 0.387341206852971 9 7 2 -6.7365563959483 LTS-024 chr7 100551221 100551222 2 * character(0) 0.229 1 NA 2.242 1 NA NA NA NA NA LTS-024 chr7 100551223 100551235 13 * character(0) 0.399 1 NA 1.676 1 NA NA NA NA NA LTS-024 chr7 100551236 100552867 1632 * character(0) 0.338608376852307 60 0.0963467416821574 2.10176686195164 100 0.808826982722385 18 12 6 -6.73568206076032 LTS-024 chr7 100552868 100552895 28 * character(0) NA 0 NA 1.057 1 NA NA NA NA NA LTS-024 chr7 100552896 100615387 62492 * MUC12 0.40774013590028 29 0.10384930110454 1.2305360766568 112 0.451179506306744 5 3 2 -6.7347441199024 LTS-024 chr7 100615388 100634964 19577 * MUC12 0.079 1 NA 1.23970088674245 36 0.83220841406732 5 5 0 -5.76441997818605 LTS-024 chr7 100634965 100681172 46208 * c(MUC12, MUC17) 0.08383116478469 29 0.025082180199233 1.44185108805235 211 1.15112535749619 7 7 0 -6.74693421507639 LTS-024 chr7 100681173 100693849 12677 * MUC17 0.148 1 NA 1.12787773381946 103 0.178755527325452 5 5 0 -5.7655909284226 LTS-024 chr7 100693850 102016771 1322922 * c(LOC100289561, MIR4285, MIR4653, LOC100630923, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, SPDYE6, VGF, TRIM56, PLOD3, MYL10) 0.103109658835209 41 0.033705919723251 1.08550193084274 1352 0.287294575429903 5 5 0 -6.8471618434429 LTS-024 chr7 102016772 102020948 4177 * c(LOC100289561, LOC100630923) NA 0 NA 0.248 1 NA NA NA NA NA LTS-024 chr7 102020949 133261628 31240680 * c(RPL19P12, LOC100130705, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SMKR1, LOC100289561, SPDYE2B, MIR3666, MIR4467, LOC100630923, MIR5090, RNA5SP244, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, CFTR, DUS4L, ZNF277, TSGA13, CPA1, CPA2, KLF14, SSMEM1, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, NA NA NA NA NA NA NA NA NA LTS-024 LAMB4, KLHDC10, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POLR2J2, POT1, HYALP1, TES, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, FAM71F2, IFRD1, DPY19L2P2, IMPDH1, IRF5, KCND2, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, ARF5, FEZF1, LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, EIF3IP1, LMOD2, MIR335, NDUFA5, NRCAM, NRF1, ORC5, PNPLA8, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, SLC26A4, PIK3CG, PODXL, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, CHCHD3, PPP1R3A, RBM28, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, STRIP2, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, CCDC136, SLC13A1, SMO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SPAM1, SRPK2, SYPL1, MIR592, MIR593, LHFPL3-AS2, TMEM229A, UBE2H, WNT2, GCC1, PRKRIP1, ST7, CBLL1, CPED1, ORAI2, CALU, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, TMEM209, CAV1, CAV2, WASL, PLXNA4, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, CEP41, DOCK4) 0.118925403304158 287 0.0471103502714868 1.02457725115585 15533 0.318266898725999 4 4 0 -6.74839990024574 LTS-024 NA NA NA NA LTS-024 chr7 133261629 133314741 53113 * EXOC4 NA 0 NA 1.322 1 NA NA NA NA NA LTS-024 chr7 133314742 135662146 2347405 * c(LRGUK, AKR1B1, NUP205, SLC13A4, WDR91, AGBL3, STRA8, FAM180A, AKR1B15, CNOT4, TMEM140, AKR1B10, EXOC4, C7orf73, BPGM, LUZP6, C7orf49, CALD1, SLC35B4) 0.091143827751777 53 0.0590753313578205 1.33707754583444 1728 0.612769739764872 6 6 0 -6.74127425105748 LTS-024 chr7 136587866 139208881 2621016 * c(LOC100129148, LOC100130880, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, CLEC2L, FMC1, TMEM213, UBN2, KLRG2, LOC349160, ATP6V0A4, LUC7L2, ZC3HAV1, MIR490, PTN, KIAA1549, CREB3L2, AKR1D1, TTC26, TRIM24, DGKI, ZC3HAV1L) 0.107867181924296 32 0.0523122506931278 1.01176296785569 2197 0.285501194769221 4 4 0 -6.79797378005854 LTS-024 chr7 139208882 139221013 12132 * CLEC2L NA 0 NA 1.429 1 NA NA NA NA NA LTS-024 chr7 139221014 140912494 1691481 * c(JHDM1D-AS1, NDUFB2-AS1, TMEM178B, CLEC2L, MKRN1, DENND2A, HIPK2, RAB19, NDUFB2, MRPS33, PARP12, BRAF, TBXAS1, KDM7A, SLC37A3, ADCK2) 0.0870722568021628 22 0.0419984796673915 1.31435555162449 1507 0.396200484228321 6 6 0 -6.76452305170174 LTS-024 chr7 140912495 141137430 224936 * TMEM178B NA 0 NA 1.001 1 NA NA NA NA NA LTS-024 chr7 141137431 141755987 618557 * c(TMEM178B, OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, MGAM) 0.122569516020858 25 0.0211658530027338 1.05144669487535 891 0.428192338411588 4 4 0 -6.74313424861732 LTS-024 chr7 141755988 141760228 4241 * MGAM 0.484 1 NA 1.16905094849092 19 0.370682553616373 5 5 0 -5.76443228150042 LTS-024 chr7 141760229 142032571 272343 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.239676311716286 13 0.0940816612011022 1.10322037047363 571 0.395262325023137 5 4 1 -6.77918039389258 LTS-024 chr7 142032572 142045446 12875 * character(0) 0.49 1 NA 1.32415765201731 3 0.621415320055758 6 6 0 -5.76447422743593 LTS-024 chr7 142045447 142045924 478 * character(0) 0.339889317532142 10 0.0904860946959992 1.34105189886491 18 0.718020665768464 18 12 6 -6.73509846045129 LTS-024 chr7 142045925 142099533 53609 * character(0) 0.094 1 NA 1.23570669428137 5 0.692182923799771 5 5 0 -5.76443936027837 LTS-024 chr7 142099534 142458938 359405 * c(MTRNR2L6, PRSS1) 0.234954917217697 37 0.112661948832402 1.2304982340081 317 0.651585301769899 6 5 1 -6.74436168013119 LTS-024 chr7 142458939 142460865 1927 * PRSS1 0.129 1 NA 1.17092003792346 13 0.502168860148221 5 5 0 -5.76441512156637 LTS-024 chr7 142460866 142495127 34262 * c(PRSS3P2, PRSS1) 0.102751790013327 9 0.0552564727229107 1.42524735163471 54 0.798587258015847 5 5 0 -6.73516659467828 LTS-024 chr7 142495128 142498687 3560 * character(0) 0.332 1 NA 1.19562227055111 5 0.561107209007334 5 5 0 -5.76441112955852 LTS-024 chr7 142498688 142567942 69255 * EPHB6 0.307017991360795 9 0.169110746093926 1.04124098918658 135 0.482992629389128 4 3 1 -6.73372183720334 LTS-024 chr7 142567943 142568518 576 * EPHB6 0.157 1 NA 0.860329276597926 13 0.212597096972244 3 3 0 -5.76442131484732 LTS-024 chr7 142568519 143305429 736911 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.122652026598684 44 0.0402929809383273 1.04179802539622 1219 0.346080089888494 4 4 0 -6.73691697565868 LTS-024 chr7 143305430 143321183 15754 * TCAF2 NA 0 NA 0.272309392378676 43 0.335937805705648 0 NA NA -5.76478104210837 LTS-024 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.293 1 NA NA NA NA NA LTS-024 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) NA 0 NA 1.20081763262834 275 0.34963330503455 5 NA NA -5.76454062545897 LTS-024 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.608 1 NA NA NA NA NA LTS-024 chr7 143883365 144015276 131912 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.423 1 NA 0.621694358199133 94 0.370785461090411 2 2 0 -5.76474812764949 LTS-024 chr7 144015277 144015487 211 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-024 chr7 144015488 144107302 91815 * c(NOBOX, ARHGEF5) 0.227802612365157 5 0.150677470114148 1.01062774172026 151 0.366782954026272 6 5 1 -6.77645590965347 LTS-024 chr7 144107303 144462951 355649 * c(NOBOX, TPK1) 0.13 1 NA 1.43061811725533 85 0.243132171176635 6 6 0 -5.76596022766446 LTS-024 chr7 144462952 147183143 2720192 * c(MIR548I4, MIR548F4, MIR548AQ, CNTNAP2, TPK1) 0.074 1 NA 1.57568888430838 119 0.37891811728887 7 7 0 -5.76566851154234 LTS-024 chr7 147183144 148904582 1721439 * c(MIR548I4, ZNF786, ZNF425, C7orf33, EZH2, CNTNAP2, ZNF398, ZNF282, CUL1, PDIA4) 0.0683252695746533 26 0.0228749106765805 1.66699592913945 895 3.88559998331661 8 8 0 -6.74463132492472 LTS-024 chr7 148904583 148907691 3109 * ZNF282 NA 0 NA 2.143 1 NA NA NA NA NA LTS-024 chr7 148907692 148947906 40215 * c(ZNF212, ZNF282) 0.0493130123245524 7 0.0106279057651252 2.30002514137006 92 0.812809951758696 12 12 0 -6.73620732728862 LTS-024 chr7 148947907 148949679 1773 * ZNF212 NA 0 NA 0.967 1 NA NA NA NA NA LTS-024 chr7 148949680 149191460 241781 * c(ZNF783, LOC155060, ZNF746, ZNF777, ZNF212) 0.0749797548201052 13 0.0200809260180797 1.6545093140903 453 0.37158256731049 8 8 0 -6.75725449471758 LTS-024 chr7 149191461 149191522 62 * ZNF746 NA 0 NA 2.181 1 NA NA NA NA NA LTS-024 chr7 149191523 149577802 386280 * c(ZNF746, ATP6V0E2, ZNF467, SSPO, ATP6V0E2-AS1, ZNF862, ZNF767P, KRBA1) 0.0582494676900461 28 0.0172594579546662 2.19994113268423 989 0.647777196699468 10 10 0 -6.73392121655344 LTS-024 chr7 149577803 149588252 10450 * character(0) NA 0 NA 1.751 1 NA NA NA NA NA LTS-024 chr7 149588253 150647243 1058991 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, KCNH2, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.0842580087523194 68 0.0551332331513153 1.6194595288697 1108 0.691106784154268 7 7 0 -6.73692347380028 LTS-024 chr7 150647244 150647342 99 * KCNH2 NA 0 NA 1.687 1 NA NA NA NA NA LTS-024 chr7 150647343 150938902 291560 * c(ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, GBX1, ATG9B, KCNH2, NOS3, CHPF2, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.0770043276901156 29 0.027196511656928 1.73870880693912 1333 0.408779728321246 7 7 0 -6.74856387323793 LTS-024 chr7 150938903 151163797 224895 * c(WDR86-AS1, MIR3907, CRYGN, WDR86, NUB1, RHEB, SMARCD3) 0.0519385237436399 8 0.00914564689581098 2.06145102516203 283 0.477524617605225 11 11 0 -6.77670924510213 LTS-024 chr7 151163798 151164125 328 * RHEB NA 0 NA 1.752 1 NA NA NA NA NA LTS-024 chr7 151164126 155755336 4591211 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, PRKAG2-AS1, RBM33, GALNTL5, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, CNPY1, HTR5A, INSIG1, PRKAG2, ACTR3B, KMT2C, RHEB, GALNT11, SHH, XRCC2) 0.0838683040847068 58 0.048109951705604 1.70194473368255 2356 0.561459601961686 7 7 0 -6.77529476780994 LTS-024 chr7 155755337 155758630 3294 * character(0) 0.046 1 NA 1.83893564281804 43 1.06235337076953 8 8 0 -5.76441177853754 LTS-024 chr7 155758631 156976719 1218089 * c(C7orf13, RNF32, LOC285889, MNX1, LMBR1, LINC00244, NOM1, MNX1-AS1, UBE3C) 0 1 NA 1.63081774733557 558 0.40703049566947 7 7 0 -5.76692184923371 LTS-024 chr7 156976720 156979466 2747 * UBE3C NA 0 NA 2.805 1 NA NA NA NA NA LTS-024 chr7 156979467 157208617 229151 * c(DNAJB6, UBE3C) 0.0466688145235232 4 0.0045 2.33967736383768 186 0.742861806070117 13 13 0 -6.73962114948066 LTS-024 chr7 157208618 157208705 88 * DNAJB6 NA 0 NA 1.704 1 NA NA NA NA NA LTS-024 chr7 157208706 158930775 1722070 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2) 0.0595971741639436 69 0.0242405710657257 1.69298703138406 1057 0.646981994490401 9 9 0 -6.81586524876859 LTS-024 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 1.490375211038 19 0.197769299706584 6 NA NA -5.76995342005662 LTS-024 chr8 182757 328513 145757 * ZNF596 0.237 1 NA 0.686703273156392 101 0.138581319015941 2 2 0 -5.79006718980651 LTS-024 chr8 328514 27143182 26814669 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, LOC100507156, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, PNMA2, ADAM28, LZTS1, CLDN23, VPS37A, NKX2-6, SGCZ, ADRA1A, CTSB, LOC157273, SGK223, PEBP4, CDCA2, LINC00599, TDRP, ERICH1, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, NA NA NA NA NA NA NA NA NA LTS-024 DEFB1, DEFB4A, DEFT1P, DPYSL2, EGR3, R3HCC1, PRSS55, C8orf74, LGI3, DMTN, CLN8, FDFT1, FGL1, XPO7, TRIM35, RHOBTB2, PSD3, SLC39A14, DEFB107A, DEFB109P1, DEFB130, NEIL2, LOC254896, GATA4, FBXO25, FGF20, GFRA2, ADAMDEC1, GNRH1, ANGPT2, FAM86B3P, XKR6, LOC286059, LOC286083, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, LOC389641, USP17L8, LOC392196, USP17L7, USP17L1, LOXL2, LPL, MIR124-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MIR320A, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, NEFM, NEFL, NKX3-1, MIR383, DEFB107B, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, KCTD9, PINX1, PIWIL2, INTS10, PPP2R2A, AGPAT5, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, ERICH1-AS1, SH2D4A, BLK, PDLIM2, SFTPC, CSMD1, USP17L4, USP17L3, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STC1, MIR596, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, NUDT18, TUSC3, DOCK5, BIN3-IT1, REEP4, STMN4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MYOM2, CHMP7, DLGAP2, MFHAS1, RP1L1, ENTPD4, ARHGEF10, PHYHIP, KBTBD11 NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 ) 0.280259703362341 446 0.0745912864489407 0.718421633206474 13878 0.518840542116681 2 2 0 -8.11824363313505 LTS-024 NA NA NA NA LTS-024 chr8 27143183 27143273 91 * TRIM35 NA 0 NA 0.756 1 NA NA NA NA NA LTS-024 chr8 27143274 28910804 1767531 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, CHRNA2, CLU, ESCO2, FBXO16, EPHX2, EXTL3, PTK2B, TRIM35, SCARA5, NUGGC, SCARA3, PNOC, ELP3, CCDC25, INTS9, PBK, ZNF395, HMBOX1, FZD3) 0.340728482912268 35 0.061997533157756 0.76967255662842 2102 0.21554496628742 3 2 1 -7.11402400904383 LTS-024 chr8 28910805 28924786 13982 * character(0) NA 0 NA 1.012 1 NA NA NA NA NA LTS-024 chr8 28924787 28950431 25645 * KIF13B NA 0 NA 1.1607540344202 103 0.328327881822585 5 NA NA -5.76465842021976 LTS-024 chr8 28950432 28956598 6167 * KIF13B NA 0 NA 0.522 1 NA NA NA NA NA LTS-024 chr8 28956599 30690289 1733691 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, DCTN6, RBPMS, DUSP4, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, SARAF, PPP2CB, TEX15, LINC00589, MBOAT4, UBXN8) 0.275249016634351 33 0.0436582370998494 0.65168101864539 1009 0.181607921920659 2 2 0 -8.14751521889978 LTS-024 chr8 30690290 33449267 2758978 * c(NRG1-IT3, PURG, NRG1, TEX15, WRN, DUSP26, RNF122, TTI2, MAK16, FUT10) 0.302581387975283 19 0.0463369303160137 0.714168202941109 967 0.183078575695458 3 2 1 -9.05836359158211 LTS-024 chr8 33449268 35406966 1957699 * c(UNC5D, DUSP26) NA 0 NA 0.740943986166344 51 0.207517264105811 3 NA NA -6.08360463431455 LTS-024 chr8 35406967 35425585 18619 * UNC5D NA 0 NA 1.011 1 NA NA NA NA NA LTS-024 chr8 35425586 36664834 1239249 * c(UNC5D, KCNU1) 0.487 1 NA 1.07811750028508 243 0.211361049749046 4 4 0 -5.81668691188707 LTS-024 chr8 36664835 39142479 2477645 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, KCNU1, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.450843772363079 47 0.0780628201213061 0.996983951673436 2862 0.232613986799415 4 2 2 -6.76817257048774 LTS-024 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.09 1 NA NA NA NA NA LTS-024 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.0840014035220705 55 0.00666060330327789 0 NA NA -21.8308426552692 LTS-024 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.057 1 NA NA NA NA NA LTS-024 chr8 39442068 43047593 3605526 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.456171129358258 37 0.0360340596304865 1.01742491126693 2820 0.291889311555231 4 2 2 -6.91738765023178 LTS-024 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 1.10794190518509 145 0.262689478595453 4 NA NA -5.7743815849347 LTS-024 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.452 1 NA 1.09883531685463 47 0.199891672790699 4 4 0 -5.79410239376712 LTS-024 chr8 48102988 53627084 5524097 * c(LOC100287846, CEBPD, PCMTD1, PXDNL, SPIDR, FAM150A, MCM4, C8orf22, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1, ST18, RB1CC1) 0.402537427510333 31 0.0744214964898244 1.00522399812481 1912 0.298132198317621 4 2 2 -6.85818889206803 LTS-024 chr8 53627085 53850999 223915 * character(0) NA 0 NA 1.39 1 NA NA NA NA NA LTS-024 chr8 53851000 54871757 1020758 * c(NPBWR1, OPRK1, ATP6V1H, RGS20) 0.397323767096991 4 0.0411693656335225 1.31982771989659 324 0.283176805394042 5 3 2 -6.87794767076172 LTS-024 chr8 54871758 54871776 19 * RGS20 NA 0 NA 1.193 1 NA NA NA NA NA LTS-024 chr8 54871777 56438373 1566597 * c(SBF1P1, LYPLA1, XKR4, MRPL15, RP1, SOX17, TCEA1, RGS20) 0.443661052679145 8 0.0490289637430191 1.11604018728072 649 0.226784971767743 4 2 2 -6.89526761925603 LTS-024 chr8 56438374 68992994 12554621 * c(TCF24, MIR124-2HG, LOC100130298, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, ARFGEF1, COPS5, XKR4, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, PDE7A, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, NA NA NA NA NA NA NA NA NA LTS-024 C8orf44, CPA6, RAB2A, RPS20, SDCBP, SNHG6, SNORD87, UG0898H09, TTPA, CA8, CHCHD7, CSPP1, VCPIP1, PREX2, NSMAF, TRIM55, DNAJC5B, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.431815374140678 84 0.10519942744751 0.972898625353403 4900 0.26865786511718 4 2 2 -6.95063778712439 LTS-024 NA NA NA NA LTS-024 chr8 68992995 68993013 19 * PREX2 0.333 1 NA 1.579 1 NA NA NA NA NA LTS-024 chr8 68993014 69621240 628227 * c(C8orf34, C8orf34-AS1, PREX2) 0.460977557274 36 0.0302800028307226 1.14885482071884 516 0.354517590160201 4 2 2 -7.16173296971166 LTS-024 chr8 69621241 73982107 4360867 * c(MSC-AS1, LINC01592, NCOA2, C8orf34, SBSPON, EYA1, SULF1, TRAM1, LACTB2-AS1, XKR9, LOC392232, LACTB2, PRDM14, TERF1, SLCO5A1, TRPA1, MSC, KCNB2) 0.459567511934039 15 0.0387517127117659 1.00871730595221 1467 0.252459765976544 4 2 2 -6.9533655916774 LTS-024 chr8 73982108 73982111 4 * SBSPON NA 0 NA 1.177 1 NA NA NA NA NA LTS-024 chr8 73982112 73993200 11089 * SBSPON 0.480006733022444 2 0.0148492424049175 1.29005752884387 10 0.148109756599624 6 3 3 -9.78658585645877 LTS-024 chr8 73993201 74204653 211453 * c(C8orf89, SBSPON, RPL7) 0.296 1 NA 1.23030023810865 57 0.274479795057372 5 5 0 -5.76486745650429 LTS-024 chr8 74204654 74706503 501850 * c(STAU2-AS1, RDH10, STAU2, UBE2W, RPL7) 0.353599356952078 5 0.183644493519408 1.22932904709753 504 0.327271893629937 6 4 2 -6.78231264672016 LTS-024 chr8 74706504 74717781 11278 * UBE2W NA 0 NA 0.766 1 NA NA NA NA NA LTS-024 chr8 74717782 74888494 170713 * c(TMEM70, UBE2W, TCEB1) 0.30246626335465 4 0.202841481622144 0.846058624536786 70 0.188897755708746 3 2 1 -6.82649495593681 LTS-024 chr8 74888495 75276959 388465 * c(LY96, GDAP1, TMEM70, JPH1) 0.475 1 NA 0.988152294542383 167 0.15480569005615 4 4 0 -5.77365008915134 LTS-024 chr8 75276960 100889556 25612597 * c(MIR875, C8orf88, LRRC69, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, POP1, WWP1, STMN2, SLC26A7, OSR2, FAM92A1, NDUFAF6, DCAF4L2, RALYL, C8orf37, VPS13B, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ERICH5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, NA NA NA NA NA NA NA NA NA LTS-024 SNORA72, TRIQK, DPY19L4, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, C8orf87, RBM12B, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, PEX2, RPL30, ZNF704, LINC01298, SDC2, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, MIR599, TPD52, OSGIN2, UQCRB, CA1, CA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, CHMP4C, TP53INP1, PTDSS1) 0.452524265007061 182 0.0598387226453294 1.00208000954307 9484 0.256227793663634 4 2 2 -6.84477460170408 LTS-024 NA NA NA NA LTS-024 chr8 100889557 104078666 3189110 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.448420991028176 22 0.0369088323408084 0.935883598674407 1807 0.23121046347329 4 2 2 -7.05054669504759 LTS-024 chr8 104078667 104080878 2212 * ATP6V1C1 NA 0 NA 1.086 1 NA NA NA NA NA LTS-024 chr8 104080879 108335042 4254164 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, ATP6V1C1, OXR1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.46247270932676 26 0.0261538936651152 1.05719614743776 1530 2.39909998658852 4 2 2 -7.29707332684157 LTS-024 chr8 108335043 108359105 24063 * ANGPT1 0 1 NA 1.77534742542584 11 1.05447242301973 8 8 0 -5.76441040317895 LTS-024 chr8 108359106 110979672 2620567 * c(TMEM74, KCNV1, ANGPT1, RSPO2, EIF3E, SYBU, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0.374385404845746 10 0.189418525434493 1.04852341487381 1214 0.342681443445041 4 2 2 -6.80645273892728 LTS-024 chr8 110979673 113241088 2261416 * c(CSMD3, KCNV1) 0.483 1 NA 1.10345663324108 109 0.252932713100617 4 4 0 -5.89561169307136 LTS-024 chr8 113241089 118175778 4934690 * c(MIR2053, MIR3610, LINC00536, CSMD3, SLC30A8, AARD, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H) 0.447486540601238 11 0.0269048829633717 1.01585029579121 1025 0.307821086923684 4 2 2 -6.84279466061414 LTS-024 chr8 118175779 118183215 7437 * SLC30A8 NA 0 NA 1.428 1 NA NA NA NA NA LTS-024 chr8 118183216 120583157 2399942 * c(COLEC10, MAL2, SLC30A8, EXT1, SAMD12, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, MED30) 0.409054542323692 13 0.129827844589553 1.20423763784773 586 0.444324888187624 5 3 2 -6.73382129606748 LTS-024 chr8 120583158 120584382 1225 * ENPP2 NA 0 NA 1.02 1 NA NA NA NA NA LTS-024 chr8 120584383 124510589 3926207 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, ZHX1, FBXO32, ZHX2, MTBP, MRPL13, ATAD2, HAS2, ENPP2, WDYHV1, HAS2-AS1, DEPTOR, SNTB1, TAF2, COL14A1, DSCC1, DERL1, C8orf76, FAM83A, TBC1D31) 0.460283506062842 49 0.0297483921705811 1.01910618106502 1853 0.241172304880793 4 2 2 -7.11154555650024 LTS-024 chr8 124510590 124968323 457734 * c(FBXO32, FAM91A1, ANXA13, KLHL38, FER1L6) 0.369601144412459 10 0.0543695176035657 1.47834132339816 435 1.0028505864402 6 4 2 -6.7433619274902 LTS-024 chr8 124968324 124975490 7167 * FER1L6 NA 0 NA 1.027 1 NA NA NA NA NA LTS-024 chr8 124975491 132947786 7972296 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, TRIB1, RNF139, ADCY8, ZNF572, TMEM65, LINC00964, FAM84B, EFR3A, NSMCE2, ASAP1-IT1, FER1L6-AS1, MYC, NDUFB9, ASAP1, FAM49B, POU5F1B, TRMT12, GSDMC, PVT1, FER1L6, SQLE, CASC8, LINC00977, TATDN1, MTSS1, KIAA0196) 0.419083835551492 47 0.0995056792525696 1.05790654569391 1965 0.30866648071824 4 2 2 -6.81938158654624 LTS-024 chr8 132947787 132971774 23988 * EFR3A 0 1 NA 0.970289843398457 32 0.410775445631638 4 4 0 -5.76461565842915 LTS-024 chr8 132971775 133699623 727849 * c(HHLA1, EFR3A, LRRC6, KCNQ3, OC90, HPYR1) 0.349622202345979 9 0.231119257335063 1.03822748253924 555 0.307122579084112 4 3 1 -6.75014295119958 LTS-024 chr8 133699624 133699761 138 * character(0) 0.491 1 NA 1.20947365312237 3 0.865494848819641 5 5 0 -5.76441013469005 LTS-024 chr8 133699762 145747628 12047867 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, NDRG1, KHDRBS3, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, TMEM71, CYC1, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, LINC01591, C8orf31, ZFP41, GPT, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, WDR97, NA NA NA NA NA NA NA NA NA LTS-024 TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, TONSL, CYHR1, FAM135B, PHF20L1, VPS28, HGH1, KCNK9, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, ZFAT-AS1, LINC00051, MROH6, SCX, ST3GAL1, SLA, PYCRL, LYNX1, TG, MIR661, TSTA3, MROH1, LINC01300, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 JRK, DGAT1, GPAA1, WISP1, FOXH1, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.45255839574883 268 0.0646948187529798 1.05527575386198 9246 0.261696940183173 4 2 2 -6.89829763621304 LTS-024 NA NA NA NA LTS-024 chr8 145747629 145752923 5295 * c(C8orf82, LRRC24, LRRC14) 0 1 NA 1.07228730247709 88 0.221684908230342 4 4 0 -5.76457736164851 LTS-024 chr8 145752924 146220876 467953 * c(ZNF252P, TMED10P1, COMMD5, ZNF517, C8orf82, ZNF250, RPL8, ZNF7, ZNF16, ARHGAP39, ZNF34, ZNF251) 0.396894439472066 14 0.16576431368756 1.0293073130194 876 0.228953238211804 4 2 2 -6.76658322662961 LTS-024 chr8 146220877 146221247 371 * c(ZNF252P, TMED10P1) NA 0 NA 0.493 1 NA NA NA NA NA LTS-024 chr8 146221248 146231441 10194 * c(ZNF252P, TMED10P1, ZNF252P-AS1) 0 1 NA 0.510453490858536 80 0.230315270988775 1 1 0 -5.7665198185279 LTS-024 chr8 146231442 146277804 46363 * character(0) NA 0 NA 1.131 1 NA NA NA NA NA LTS-024 chr8 146277805 146279728 1924 * C8orf33 0.451 1 NA 0.857642380934554 27 0.142398601901008 3 3 0 -5.76448040929619 LTS-024 chr8 146279729 146280905 1177 * C8orf33 NA 0 NA 1.00590228052557 19 0.224519460858282 4 NA NA -5.76441251593279 LTS-024 chr9 14732 14821 90 * WASH1 0 1 NA 1.758 1 NA NA NA NA NA LTS-024 chr9 14822 2622278 2607457 * c(WASH1, DMRT2, C9orf66, DMRT1, FOXD4, KANK1, VLDLR-AS1, CBWD1, DMRT3, FAM138C, SMARCA2, VLDLR, DOCK8) 0.379619579264827 41 0.0552309232047481 1.31781186323928 977 0.315640640277417 6 4 2 -6.84721717191657 LTS-024 chr9 2622279 2622284 6 * c(VLDLR-AS1, VLDLR) NA 0 NA 2.044 1 NA NA NA NA NA LTS-024 chr9 2622285 3218545 596261 * c(KCNV2, VLDLR-AS1, VLDLR, PUM3) 0.226 1 NA 1.71470074323122 258 0.346628190782734 8 8 0 -5.76900663202865 LTS-024 chr9 3218546 35618523 32399978 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4667, MIR4473, MIR4665, MIR4474, SNORD121B, RCL1, TOPORS, SIGMAR1, CDKN2A, CDKN2B, UNC13B, RRAGA, CCL27, PSIP1, INSL6, PTENP1, DCTN3, UHRF2, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, ATP8B5P, GLIS3, ELAVL2, C9orf72, CCDC171, FAM219A, FANCG, KDM4C, NA NA NA NA NA NA NA NA NA LTS-024 MLANA, PHF24, DDX58, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, B4GALT1, RANBP6, DNAI1, SPINK4, GLDC, TUSC1, LURAP1L, CD274, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, FAM205BP, LINC01235, HACD4, LINC01242, TMEM215, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PLPP6, MIR101-2, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, KLHL9, PRSS3, IFNK, BAG1, MIR491, KIAA1161, RIC1, PTPRD, RFX3, RLN1, RLN2, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SNAPC3, SCARNA8, TEK, TESK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 FAM166B, TYRP1, VCP, MOB3B, CAAP1, ERMP1, IFT74, FAM214B, PDCD1LG2, C9orf24, PIGO, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, CD72, RUSC2) 0.353489197604647 277 0.0691970687020559 1.37334607526826 13403 0.374147108547121 6 4 2 -6.79948629639871 LTS-024 NA NA NA NA LTS-024 chr9 35618524 35618888 365 * CD72 NA 0 NA 1.45333614781193 5 0.273826222265144 6 NA NA -5.76441401089533 LTS-024 chr9 35618889 35649239 30351 * CD72 NA 0 NA 0.869 1 NA NA NA NA NA LTS-024 chr9 35649240 35681122 31883 * c(CCDC107, SIT1, RMRP, CA9, ARHGEF39) 0.42 1 NA 0.914739895959506 195 0.177459793840232 3 3 0 -5.77042939941551 LTS-024 chr9 35681123 40503123 4822001 * c(GNE, FAM95C, EBLN3P, MIR4540, MIR4475, MIR4476, CREB3, CLTA, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ALDH1B1, FRMPD1, ANKRD18A, SPAG8, FBXO10, IGFBPL1, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, NA, POLR1E, SHB, HRCT1, NA, MSMP, TLN1, TPM2, CA9, DCAF10, CNTNAP3, ZCCHC7, RECK, HINT2, CCIN, SLC25A51, LINC00950, GRHPR, RGP1, MELK, ZBTB5) 0.446558564878891 36 0.110223881115909 1.00402974642835 3330 0.302561331949229 4 2 2 -6.74565970546336 LTS-024 chr9 40503124 40774580 271457 * c(ZNF658, ZNF658B, NA, SPATA31A3, FAM74A3) NA 0 NA 0.940165875035661 11 0.100951293386284 4 NA NA -5.86654495315653 LTS-024 chr9 40774581 40784042 9462 * c(ZNF658, ZNF658B, NA) NA 0 NA 0.691 1 NA NA NA NA NA LTS-024 chr9 40784043 44175697 3391655 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, CNTNAP3B) NA 0 NA 0.496181890252201 45 0.278005477382273 1 NA NA -6.05134573245026 LTS-024 chr9 65602571 69002317 3399747 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.347525052620955 26 0.090023321764632 1.08084787957488 70 0.313280016498116 4 3 1 -6.89401497307554 LTS-024 chr9 69002318 71627525 2625208 * c(LOC100133920, FAM122A, TMEM252, FOXD4L3, LOC440896, PGM5, PRKACG, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.462 1 NA 1.02956588284079 281 0.237899799743179 4 4 0 -5.7673094989921 LTS-024 chr9 71627526 105405415 33777890 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SEC61B, SLC35D2, CKS2, GRIN3A, TMC1, COL15A1, CARNMT1, C9orf57, C9orf85, NA NA NA NA NA NA NA NA NA LTS-024 C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, ALDOB, HABP4, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, TDRD7, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, INVS, GNAQ, C9orf47, SPATA31E1, LOC286238, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 LOC286359, MIR4290HG, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PHF2, SHC3, NANS, MRPL50, NUTM2F, DIRAS2, ASPN, TEX10, PLPPR1, AUH, NMRK1, STX17, NOL8, C9orf40, RFK, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, NAA35, RORB, SLC28A3, SPATA31C2, IPPK, WNK2, RPSAP9, SYK, KLF9, TGFBR1, TLE1, TLE4, TMOD1, CORO2A, XPA, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, RMI1, TRPM3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 NR4A3, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14) 0.443417488288606 297 0.0928946095134614 1.00137942874388 17758 0.509886683168588 4 2 2 -6.76087990042043 LTS-024 NA NA NA NA LTS-024 chr9 105405416 105419824 14409 * character(0) NA 0 NA 0.861337859120682 9 0.114964124839012 3 NA NA -5.76542754101893 LTS-024 chr9 105419825 105757540 337716 * character(0) NA 0 NA 0.638 1 NA NA NA NA NA LTS-024 chr9 105757541 106900480 1142940 * c(SMC2, CYLC2) NA 0 NA 0.586316715657976 183 0.144769985307348 2 NA NA -5.98084281100688 LTS-024 chr9 106900481 106901418 938 * SMC2 NA 0 NA 0.729 1 NA NA NA NA NA LTS-024 chr9 106901419 106902213 795 * SMC2 0.196 1 NA 0.760756305899395 15 0.110506539345395 3 3 0 -5.76469019950568 LTS-024 chr9 106902214 107457725 555512 * c(SMC2, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.165896718742207 16 0.0413182264059499 0.818635296673756 228 0.511789877677615 3 3 0 -6.78351729269447 LTS-024 chr9 107457726 107457741 16 * OR13D1 NA 0 NA 0.635889972503718 2 0.0841457069611991 2 NA NA -5.76441013812929 LTS-024 chr9 107457742 107515214 57473 * c(NIPSNAP3A, OR13D1) 0.129 1 NA 0.497142468584707 13 0.159707224119316 1 1 0 -5.78039220065058 LTS-024 chr9 107515215 117074810 9559596 * c(FAM225B, MIR548Q, MIR3134, MIR4668, ACTL7B, ACTL7A, AKAP2, KIF12, PALM2, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, ABCA1, LPAR1, ALAD, FKTN, PTGR1, FKBP15, KIAA0368, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, GNG10, FAM225A, NA, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, POLE3, EPB41L4B, BSPRY, DNAJC25, FAM206A, TMEM38B, DNAJC25-GNG10, NA NA NA NA NA NA NA NA NA LTS-024 NIPSNAP3B, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, MIR455, SUSD1, LRRC37A5P, TAL2, TXN, UGCG, ZFP37, SVEP1, HDHD3, FSD1L, HSDL2, IKBKAP, COL27A1, CTNNAL1, PRPF4, KLF4, PTBP3) 0.19120458535146 148 0.0596420884050983 0.653210847908923 7616 0.211139941241712 2 2 0 -6.82689070016254 LTS-024 NA NA NA NA LTS-024 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.199 1 NA NA NA NA NA LTS-024 chr9 117085363 117089956 4594 * ORM1 0.200862993072268 2 0.0395979797464467 0.197442619216009 41 0.0856937684503343 2 2 0 -7.20840006462553 LTS-024 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.577 1 NA NA NA NA NA LTS-024 chr9 117092173 135937469 18845297 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100272217, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100505478, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, LAMC3, ZER1, CEL, POMT1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, SPACA9, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, AK8, OR1Q1, TTLL11, TTC16, BRINP1, OLFML2A, DNM1, TOR1A, MEGF9, NA NA NA NA NA NA NA NA NA LTS-024 ENDOG, ENG, AK1, TMEM268, NAIF1, STOM, DOLK, TRIM32, FNBP1, SETX, ZBTB43, ASTN2, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, WHRN, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, GSN, PKN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SLC2A8, ST6GALNAC6, HSPA5, TNC, ADGRD2, QRFP, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, NDUFA8, ODF2, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, BARHL1, SH3GLB2, PSMB7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, LINC00474, PRDM12, RPL12, NRON, SET, DDX31, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TLR4, TRAF1, TSC1, C5, TTF1, ZNF79, C9orf16, MAPKAP1, PTGES2, NUP214, AKNA, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, MRRF, RBM18, GTF3C5, GTF3C4, LHX2, TNFSF8, MED27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PTGES, ATP6V1G1, RALGPS1, TNFSF15) 0.18562514752154 306 0.0568761526717553 0.655754899544058 18219 0.186915474724889 2 2 0 -7.03367751392745 LTS-024 NA NA NA NA LTS-024 chr9 135937470 135979840 42371 * c(CEL, CELP, RALGDS) 0.113520627118875 2 0.0176776695296637 0.919837421217043 131 0.337172697516681 5 5 0 -6.87686992158726 LTS-024 chr9 135979841 135981338 1498 * RALGDS NA 0 NA 0.664 1 NA NA NA NA NA LTS-024 chr9 135981339 139694996 3713658 * c(LOC100128593, LINC01502, RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, UBAC1, OLFM1, AGPAT2, SDCCAG3, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, CAMSAP1, C9orf62, C9orf163, LCN6, DBH, STKLD1, QSOX2, SARDH, FCN1, FCN2, PMPCA, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD36C, SNORD36B, NA NA NA NA NA NA NA NA NA LTS-024 SNORD36A, SNORD24, ABO, OBP2B, OBP2A, GLT6D1, LCN15, TMEM8C, LCN9, LCN1, LOC401557, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, INPP5E, REXO4, KCNT1, RALGDS, RPL7A, RXRA, CARD9, FAM163B, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, DNLZ, VAV2, BRD3, LHX3, CCDC183, SNHG7, TMEM141, C9orf69, ADAMTSL2, PPP1R26, SEC16A) 0.201761073065823 166 0.0613533487786338 0.664247698639089 5549 0.561117376092016 2 2 0 -6.74594854903015 LTS-024 NA NA NA NA LTS-024 chr9 139694997 139697103 2107 * CCDC183 NA 0 NA 1.006 1 NA NA NA NA NA LTS-024 chr9 139697104 139917397 220294 * c(CCDC183-AS1, MIR4292, MIR4479, MAMDC4, ABCA2, LCN12, C9orf142, PHPT1, C9orf172, LCNL1, FBXW5, RABL6, PTGDS, TRAF2, C8G, CCDC183, EDF1, CLIC3) 0.108137261153291 15 0.0484942804678576 1.01669190844487 1083 0.237629113199245 4 4 0 -6.80502174563623 LTS-024 chr9 139917398 141070317 1152920 * c(STPG3-AS1, MAN1B1-AS1, MIR3621, TUBB4B, NOXA1, MAN1B1, ZMYND19, SLC34A3, ABCA2, FUT7, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, C9orf139, FAM166A, STPG3, NRARP, TOR4A, EXD3, NPDC1, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, SAPCD2, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2) 0.229689753374347 56 0.085415225307235 0.666661977449983 2821 0.257585961552506 2 2 0 -6.82610352003807 LTS-024 chr9 141070318 141071759 1442 * TUBBP5 NA 0 NA 0.459380405465518 3 0.225166604983954 1 NA NA -5.76442535380971 LTS-024 chr10 94832 95289 458 * TUBB8 0.236 1 NA 0.565741778148854 5 0.0634783427634969 2 2 0 -5.76536620733756 LTS-024 chr10 95290 3823419 3728130 * c(PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, IDI1, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, IDI2) 0.201013143320744 44 0.057015742790954 0.640682770836749 1642 0.229342665902594 2 2 0 -6.7346641809711 LTS-024 chr10 3823420 3827442 4023 * KLF6 NA 0 NA 0.585640995281454 33 0.0636386877281232 2 NA NA -5.76860891448884 LTS-024 chr10 4867081 4868445 1365 * AKR1E2 0.379 1 NA 1.04408656508705 7 0.313917565764068 4 4 0 -5.76441500411594 LTS-024 chr10 4868446 6552919 1684474 * c(MIR3155A, MIR3155B, NET1, AKR1C4, UCN3, AKR1C1, AKR1C2, GDI2, AKR1C8P, IL2RA, IL15RA, AKR1C6P, LOC399715, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, ASB13, TUBAL3, CALML3, AKR1E2, FBXO18, RBM17, AKR1C3) 0.351961413210055 43 0.0710874479016474 1.35318713190853 1743 0.396427727279945 6 4 2 -6.75461472725379 LTS-024 chr10 6552920 6557218 4299 * PRKCQ NA 0 NA 1.38282810205118 9 0.178604389021597 6 NA NA -5.76442432944253 LTS-024 chr10 7200549 7202028 1480 * SFMBT2 0.482 1 NA 0.961538036158461 31 0.2282428201417 4 4 0 -5.76446773272764 LTS-024 chr10 7202029 17813397 10611369 * c(ST8SIA6-AS1, PPIAP30, MIR1265, MIR4480, OPTN, RPP38, CELF2, NUDT5, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ST8SIA6, ITIH2, C1QL3, GATA3-AS1, ACBD7, CELF2-AS2, CDNF, ATP5C1, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, SFMBT2, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, FAM188A, STAM, CUBN, ITIH5, FAM107B, NA NA NA NA NA NA NA NA NA LTS-024 CCDC3, TAF3, ITGA8, PRPF18, CDC123, HACD1, PTER, NMT2, USP6NL) 0.441983099172294 104 0.0973802552626106 0.994487595917405 5311 0.265598905232137 4 2 2 -6.78887739037202 LTS-024 NA NA NA NA LTS-024 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.003 1 NA NA NA NA NA LTS-024 chr10 17842448 17891770 49323 * c(MRC1, NA, TMEM236) NA 0 NA 0.232334887466498 39 0.20385007125816 0 NA NA -5.77045908478118 LTS-024 chr10 17891771 17898210 6440 * c(MRC1, NA, TMEM236) NA 0 NA 0.724 1 NA NA NA NA NA LTS-024 chr10 17898211 18267068 368858 * c(SLC39A12, MRC1, NA, TMEM236) 0.479 1 NA 0.854231400907087 138 0.483954142648461 3 3 0 -5.76532736628508 LTS-024 chr10 18267069 18270214 3146 * SLC39A12 NA 0 NA 1.036 1 NA NA NA NA NA LTS-024 chr10 18270215 23731317 5461103 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, DNAJC1, BMI1, CACNB2, MLLT10, PLXDC2, SPAG6) 0.447481719022349 44 0.0784368964393951 0.995709177054205 2249 0.299408593088092 4 2 2 -6.76576155203775 LTS-024 chr10 24497693 24891097 393405 * c(KIAA1217, ARHGAP21, MIR603) 0.305039452632741 9 0.116855085944563 1.46857172456278 385 0.612636202576416 7 5 2 -6.74678908862898 LTS-024 chr10 24891098 38672144 13781047 * c(ABI1, MIR938, GPR158-AS1, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ENKUR, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, SEPT7P9, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, PRTFDC1, ZNF248, GPR158, ARHGAP21, KIAA1462, LINC00264, SVIL, NA NA NA NA NA NA NA NA NA LTS-024 MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CCDC7, THNSL1, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.443199572560628 146 0.0792303807621225 0.968574634687822 5675 0.470507737683998 4 2 2 -6.83321742195868 LTS-024 NA NA NA NA LTS-024 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.989582925008191 5 0.162837342154679 4 NA NA -5.76574447238171 LTS-024 chr10 42379879 42379883 5 * character(0) 0.421 1 NA 0.072 1 NA NA NA NA NA LTS-024 chr10 42379884 46934817 4554934 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.457400902184474 67 0.0576553296934673 0.977169992032232 1819 0.255915811976485 4 2 2 -6.88820661351223 LTS-024 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 4.233 1 NA NA NA NA NA LTS-024 chr10 46952744 47000487 47744 * c(PTPN20, GLUD1P7, NA, NA, SYT15, GPRIN2) 0.433577254451388 30 0.0773716883680299 1.24922347632703 163 0.435900701589933 6 3 3 -6.73555408295104 LTS-024 chr10 47000488 47000508 21 * c(PTPN20, GLUD1P7, NA, NA, GPRIN2) 0.21 1 NA 3.221 1 NA NA NA NA NA LTS-024 chr10 47000509 47756145 755637 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, GPRIN2) 0.304948666217447 7 0.0863616427202108 1.20473376685838 140 0.535670568603345 4 3 1 -6.78142225142123 LTS-024 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.089 1 NA NA NA NA NA LTS-024 chr10 47903105 48033122 130018 * c(PTPN20, GLUD1P7, NA, NA, NA) 0.333 1 NA 0.400877294933917 46 0.273618546847146 1 1 0 -5.77617205496348 LTS-024 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.117 1 NA NA NA NA NA LTS-024 chr10 48054940 50396414 2341475 * c(MIR4294, FAM170B-AS1, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.34249462614281 36 0.128781354634851 1.35300182514699 1362 0.391065237603259 6 4 2 -6.75908474795629 LTS-024 chr10 50396415 50396427 13 * NA NA 0 NA 0.929 1 NA NA NA NA NA LTS-024 chr10 50396428 50533776 137349 * c(C10orf71, NA) 0.243 1 NA 0.924372168450576 72 0.200290559184879 4 4 0 -5.78390231403257 LTS-024 chr10 50533777 50534599 823 * c(C10orf71, NA) 0.409 1 NA 0.924818632716099 20 0.162952883083618 4 4 0 -5.76458519844063 LTS-024 chr10 50534600 51065522 530923 * c(NA, CHAT, C10orf71, ERCC6, C10orf53, NA, OGDHL, DRGX, SLC18A3, PARG) 0.437301950785921 24 0.0962577683671011 1.02646807465295 786 0.312848272294171 4 2 2 -6.73332733030791 LTS-024 chr10 51065523 51124012 58490 * c(NA, PARG) NA 0 NA 0.938 1 NA NA NA NA NA LTS-024 chr10 51124013 51540236 416224 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.442756903372678 40 0.394913882205949 1 NA NA -5.76448823560166 LTS-024 chr10 51540237 63172648 11632412 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.440272060452204 59 0.0850146994543867 1.05100979881776 3124 0.3169134123353 4 2 2 -6.79993119285545 LTS-024 chr10 63172649 71174736 8002088 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.45422273391803 71 0.0670599719581973 0.959757745030787 3745 0.245043170355524 4 2 2 -7.05242787178814 LTS-024 chr10 71174737 72358655 1183919 * c(COL13A1, EIF4EBP2, C10orf35, TYSND1, TSPAN15, PALD1, NODAL, NEUROG3, PPA1, LRRC20, H2AFY2, PRF1, SAR1A, NPFFR1, TACR2, AIFM2) 0.461462651997151 31 0.0448456372771722 1.04539167624583 1243 0.245223380388173 4 2 2 -6.92969861751835 LTS-024 chr10 72358656 72432498 73843 * PRF1 0.367 1 NA 1.11851956387271 23 0.217104808845211 5 5 0 -5.77023707728861 LTS-024 chr10 72432499 73575454 1142956 * c(ADAMTS14, UNC5B, TBATA, C10orf105, PCBD1, SLC29A3, CDH23, C10orf54, UNC5B-AS1, SGPL1) 0.43209561611074 34 0.114555468820655 1.04517854849406 1321 0.294183334968538 4 2 2 -6.73873962289777 LTS-024 chr10 73575455 73575459 5 * CDH23 NA 0 NA 0.934 1 NA NA NA NA NA LTS-024 chr10 73575460 74671611 1096152 * c(MIR1256, MIR4676, MICU1, ANAPC16, OIT3, ASCC1, DDIT4, DNAJB12, PSAP, CDH23, MCU, CHST3, SPOCK2) 0.467734611285351 14 0.0209704134856288 0.975876995894662 840 0.203256012431311 4 2 2 -7.90056019847102 LTS-024 chr10 74671612 74767552 95941 * c(OIT3, P4HA1, PLA2G12B) 0.241 1 NA 0.960798637765757 87 0.157371232732479 4 4 0 -5.77246798712989 LTS-024 chr10 74767553 75391373 623821 * c(ECD, MSS51, CFAP70, USP54, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1) 0.17854863568778 9 0.100953922382662 0.976364203617239 1059 0.231504593816122 4 4 0 -6.90984826239686 LTS-024 chr10 75391374 75562240 170867 * c(CHCHD1, FUT11, ZSWIM8, GLUD1P3, MYOZ1, AGAP5, BMS1P4, SYNPO2L, NDST2, SEC24C) 0.395 1 NA 1.02702737583041 591 0.208827237686437 4 4 0 -5.76455098861438 LTS-024 chr10 75562241 111440867 35878627 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, BMS1P21, KCNIP2-AS1, MIR1287, MIR1307, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, PPIF, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, POLR3A, NA NA NA NA NA NA NA NA NA LTS-024 LDB3, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, COMTD1, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, ADK, COX15, CPN1, ACSM6, SAMD8, LIPJ, CFL1P1, DYDC1, EIF5AL1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, LINC00858, DNTT, TMEM254-AS1, PLAC9, ZCCHC24, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, WAPL, PPRC1, RRP12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TBC1D12, DNMBP, FRAT2, KAT6B, IFIT5, ZNF503-AS1, CALHM1, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, AP3M1, ANKRD1, GHITM, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, FLJ37201, ZMIZ1-AS1, GRID1, BLNK, HELLS, KCNIP2, HHEX, ANXA11, TLX1, HPS1, HTR7, FFAR4, DUPD1, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KCNMA1, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, LIPA, LBX1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 GOLGA7B, ARL3, MIR107, C10orf62, C10orf55, LINC00595, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, DUSP13, PDE6C, SUFU, PGAM1, PITX3, PLAU, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, ZMIZ1, PTEN, AS3MT, MIR146B, STAMBPL1, SEMA4G, ALDH18A1, ACTA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 RBP4, RGR, AVPI1, HPSE2, RPS24, SCD, MMS19, LOC642361, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, SFTPD, FBXW4, BEND3P3, SFTPA1, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, SFTPA2, VCL, VDAC2, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, TMEM254, CFAP43, TNKS2, TRIM8, TSPAN14, KAZALD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CAMK2G, SFXN3, SLC25A28, ELOVL3, MARVELD1, C10orf11, PCGF6, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ZNF503, ATAD1, ARHGAP19, NDST2, MBL1P, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, NEURL1, LGI1, NOLC1, CDHR1, DLG5, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A) 0.442966996554244 477 0.0872014856309356 0.997515541428156 23949 0.262591650396537 4 2 2 -6.87684765519873 LTS-024 NA NA NA NA LTS-024 chr10 111440868 111624552 183685 * XPNPEP1 NA 0 NA 1.733 1 NA NA NA NA NA LTS-024 chr10 111624553 112258263 633711 * c(ADD3-AS1, SMNDC1, ADD3, DUSP5, MXI1, XPNPEP1) 0.351893739768676 4 0.0598853070460526 1.44889651714698 391 0.325855755010778 6 4 2 -6.75663190207789 LTS-024 chr10 112258264 112262466 4203 * DUSP5 NA 0 NA 1.031 1 NA NA NA NA NA LTS-024 chr10 112262467 120068163 7805697 * c(MIR2110, MIR4295, MIR3663, MIR4680, MIR4483, VAX1, PDZD8, PNLIPRP3, TRUB1, VTI1A, C10orf82, ADRA2A, ADRB1, DUSP5, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, ZDHHC6, RPL13AP6, SLC18A2, TCF7L2, TECTB, PLEKHS1, SHOC2, CASP7, NA NA NA NA NA NA NA NA NA LTS-024 AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.434699405673601 99 0.0987513112829758 1.02606963131533 5217 0.264828361854215 4 2 2 -6.73621007939557 LTS-024 NA NA NA NA LTS-024 chr10 120068164 121652470 1584307 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, INPP5F, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.473590462872122 13 0.021604842761965 0.935442410094497 1290 0.646529192835478 4 2 2 -8.17651565243834 LTS-024 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 1.191 1 NA NA NA NA NA LTS-024 chr10 121657875 126480233 4822359 * c(MIR3941, FAM24B-CUZD1, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, CPXM2, DMBT1, PLPP4, FAM24B, FGFR2, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.463471574194668 71 0.0402988234446883 1.0218461663871 2877 0.263372695120644 4 2 2 -7.0019945905744 LTS-024 chr10 126480234 126508073 27840 * c(FAM175B, METTL10) NA 0 NA 0.966547378710889 23 0.218515834576065 4 NA NA -5.76539086298202 LTS-024 chr10 126508074 126515120 7047 * FAM175B NA 0 NA 1.535 1 NA NA NA NA NA LTS-024 chr10 126515121 126677461 162341 * c(CTBP2, FAM175B, ZRANB1) 0.015 1 NA 1.3148716234144 213 0.299942889934192 6 6 0 -5.76879220842135 LTS-024 chr10 126677462 126727824 50363 * c(MIR4296, CTBP2) 0.301528471460738 5 0.110210253606459 1.35567350706062 115 0.294692628916567 7 5 2 -6.75859104747733 LTS-024 chr10 127265061 127418042 152982 * c(TEX36-AS1, EDRF1, LOC283038, TEX36, FLJ37035) 0.356 1 NA 0.961461817583038 89 0.196807791883002 4 4 0 -5.77243418210548 LTS-024 chr10 127418043 127503712 85670 * c(MMP21, EDRF1, UROS) NA 0 NA 1.40548668209782 248 0.407727354809556 6 NA NA -5.76441292093925 LTS-024 chr10 127503713 127585210 81498 * c(MIR4484, DHX32, BCCIP, UROS, FANK1) 0.282854675817401 11 0.110144780753664 0.972683988852222 178 0.245513546814678 4 3 1 -6.77768541154622 LTS-024 chr10 127585211 127668317 83107 * c(FANK1-AS1, FANK1) 0.466 1 NA 1.28443985017106 7 0.401395660403144 5 5 0 -5.76550722232347 LTS-024 chr10 127668318 134693137 7024820 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2, FANK1) 0.439918797757244 96 0.0654196364841574 1.01360732355944 2788 0.37185644143935 4 2 2 -6.73619712679494 LTS-024 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.601 1 NA NA NA NA NA LTS-024 chr10 134694406 134756359 61954 * CFAP46 0.471510421191718 2 0.000707106781186627 0.534089897709942 165 0.125744787228543 2 1 1 -25.4996093900704 LTS-024 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.525 1 NA NA NA NA NA LTS-024 chr10 134884462 135279810 395349 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1) 0.450135653371648 30 0.0976911859693184 1.01880929974415 1171 0.24784025114597 4 2 2 -6.74576153026171 LTS-024 chr10 135279811 135280765 955 * SCART1 0.403 1 NA 0.840144610404851 5 0.226145528366139 3 3 0 -5.76441249763742 LTS-024 chr10 135280766 135473026 192261 * c(CYP2E1, SPRNP1, FRG2B, SCART1, SYCE1) 0.304998297564723 9 0.0829894571617383 1.05387850713707 215 0.390889172287944 4 3 1 -6.73866109673102 LTS-024 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.355 1 NA NA NA NA NA LTS-024 chr11 193025 193096 72 * SCGB1C1 0.386 1 NA 0.238 1 NA NA NA NA NA LTS-024 chr11 193097 794392 601296 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.197904998025679 80 0.0583282722337303 0.634434147104767 2222 0.330538568241587 2 2 0 -6.73388023555352 LTS-024 chr11 794393 794397 5 * SLC25A22 NA 0 NA 0.801 1 NA NA NA NA NA LTS-024 chr11 794398 839804 45407 * c(CRACR2B, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, SLC25A22, CD151) 0.125290778595384 15 0.0244095999850176 1.01278305235204 330 0.304228147039128 4 4 0 -6.73310703547382 LTS-024 chr11 839805 839807 3 * POLR2L NA 0 NA 0.674 1 NA NA NA NA NA LTS-024 chr11 839808 1010649 170842 * c(AP2A2, POLR2L, CHID1, TSPAN4) 0.174935690835335 10 0.102100223092585 0.677486467050072 336 0.160257891592574 2 2 0 -6.78422892999026 LTS-024 chr11 1010650 1016834 6185 * c(AP2A2, MUC6) 0.287 1 NA 0.680053067741959 77 0.101595918669808 2 2 0 -5.76595155899307 LTS-024 chr11 1016835 1213023 196189 * c(MUC2, MUC6, MUC5B) 0.273554334642477 65 0.101124185838693 0.755381036773819 557 0.284926734392246 4 3 1 -6.94761885543203 LTS-024 chr11 1213024 1213174 151 * MUC5B 0.457 1 NA 0.889216949638528 3 0.29916104915803 3 3 0 -5.76441524650555 LTS-024 chr11 1213175 1213566 392 * MUC5B 0.405264477922212 17 0.0520651458440741 0.856503221873717 25 0.237681951355167 10 6 4 -6.73676358397842 LTS-024 chr11 1213567 1215580 2014 * MUC5B 0.139 1 NA 0.721754817781375 25 0.177539685704352 2 2 0 -5.76500885133296 LTS-024 chr11 1215581 4470881 3255301 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, DUSP8, TOLLIP-AS1, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, NA NA NA NA NA NA NA NA NA LTS-024 CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.183938315670539 161 0.0617755969528582 0.726765640664105 3778 0.192053728240319 2 2 0 -7.57715638564329 LTS-024 NA NA NA NA LTS-024 chr11 4470882 4470888 7 * OR52K2 NA 0 NA 0.905 1 NA NA NA NA NA LTS-024 chr11 4470889 4790951 320063 * c(OR52M1, OR52K2, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, TRIM68, OR51E2) 0.183961900461172 18 0.0408713908282468 0.855132263522446 430 0.455921921553033 2 2 0 -6.90351759520212 LTS-024 chr11 4790952 4791039 88 * OR51F1 NA 0 NA 0.651 1 NA NA NA NA NA LTS-024 chr11 4791040 5776894 985855 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51G1, OR51B4, OR51B2, OR51G2, TRIM5) 0.219392073045117 55 0.0495325828892131 0.703740811337983 1464 0.268147426163858 2 2 0 -6.90402820199812 LTS-024 chr11 5776895 5809477 32583 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) 0.247 1 NA 0.338556578184408 39 0.135300734657726 1 1 0 -5.84428122006355 LTS-024 chr11 5809478 5809500 23 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.67 1 NA NA NA NA NA LTS-024 chr11 5809501 11895448 6085948 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, TRIM22, IPO7, TRIM3, LYVE1, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, ADM, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, NA NA NA NA NA NA NA NA NA LTS-024 ILK, GALNT18, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, CYB5R2, USP47, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, RPL27A, SNORA3A, MRPL17, LOC644656, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, SNORD97, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, RIC3, SBF2, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CTR9, TRIM66) 0.201295524706983 234 0.0541245765989034 0.649791569685604 7300 0.202498483564662 2 2 0 -6.76866759148882 LTS-024 NA NA NA NA LTS-024 chr11 11895449 12540178 644730 * c(DKK3, USP47, PARVA, MICALCL, MICAL2) 0.10266145712221 8 0.0252893964227811 1.00275846674788 569 0.238609286699097 5 5 0 -6.97061951804374 LTS-024 chr11 12540179 12549312 9134 * PARVA NA 0 NA 0.631 1 NA NA NA NA NA LTS-024 chr11 12549313 17809652 5260340 * c(LINC00958, USH1C, SPON1, OR7E14P, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, SERGEF, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, ARNTL, MYOD1, NUCB2, PDE3B, PIK3C2A, SOX6, PARVA, PSMA1, PTH, RPS13, RASSF10, ABCC8, TEAD1, CALCA, CALCB, FAR1, BTBD10) 0.186645235623726 64 0.0583582174815085 0.655872454742304 3348 0.188928303902066 2 2 0 -6.83934422112348 LTS-024 chr11 17809653 20071459 2261807 * c(LOC100126784, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, NAV2-AS5, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, LDHA, LDHC, NAV2-AS4, LOC494141, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, E2F8, CSRP3, PTPN5, NAV2) 0.219614196660243 44 0.0892061773190714 0.608612608586926 2061 0.170634240418072 2 2 0 -6.85676300831789 LTS-024 chr11 20071460 20072753 1294 * NAV2 NA 0 NA 0.918 1 NA NA NA NA NA LTS-024 chr11 20072754 34533429 14460676 * c(C11orf91, CCDC179, DCDC5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, DBX1, DNAJC24, ARL14EP, MUC15, CSTF3, SLC5A12, METTL15, IMMP1L, ELF5, ANO5, FANCF, FSHB, KIAA1549L, SVIP, ABTB2, GAS2, FBXO3, ELP4, LINC00294, LUZP2, CSTF3-AS1, DCDC1, KCNA4, FIBIN, LMO2, CAPRIN1, DKFZp686K1684, NELL1, CCDC73, BDNF-AS, PAX6, WT1-AS, NAT10, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, PRRG4, NA NA NA NA NA NA NA NA NA LTS-024 QSER1, KIF18A, BBOX1, CAT, NAV2, CCDC34, SLC6A5, DEPDC7, CD59) 0.201817208716219 137 0.0731661332953966 0.66741977092277 6135 0.201185861565431 2 2 0 -7.16853314338382 LTS-024 NA NA NA NA LTS-024 chr11 34533430 34643823 110394 * c(ELF5, EHF) NA 0 NA 1.154 1 NA NA NA NA NA LTS-024 chr11 34643824 34681761 37938 * EHF 0.127691151414783 4 0.00912870929175277 1.02416977601493 78 0.340382374209742 4 4 0 -6.78340789626177 LTS-024 chr11 34681762 34904399 222638 * c(EHF, APIP) 0.321 1 NA 1.13980460164723 31 0.167026216472886 5 5 0 -5.78155373479574 LTS-024 chr11 34904400 35463097 558698 * c(MIR1343, PAMR1, APIP, SLC1A2, PDHX, CD44) 0.320547478548837 21 0.0905317097827633 1.0942844449281 657 0.270212860039392 4 3 1 -6.76104023657036 LTS-024 chr11 35463098 35547418 84321 * PAMR1 0.442 1 NA 1.04984882532806 47 0.160716711139797 4 4 0 -5.76613946779081 LTS-024 chr11 35547419 43333610 7786192 * c(LOC100507205, MIR3973, C11orf74, LDLRAD3, FJX1, PAMR1, COMMD9, HNRNPKP3, TRIM44, LRRC4C, RAG1, RAG2, TRAF6, PRR5L, API5) 0.424782240886195 25 0.0838734761411496 1.11430732313824 842 0.288592024987252 5 3 2 -7.10417627814851 LTS-024 chr11 43333611 43333664 54 * API5 NA 0 NA 0.889 1 NA NA NA NA NA LTS-024 chr11 43333665 47283458 3949794 * c(MIR670, MIR3160-2, MIR3160-1, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, LRP4, MIR129-2, MDK, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, SYT13, ALX4, SNORD67, SEC14L1P1, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, API5, TSPAN18, CREB3L1, PEX16, NA NA NA NA NA NA NA NA NA LTS-024 MAPK8IP1, TP53I11, ATG13, CKAP5) 0.461571510634957 52 0.0725077309031525 1.02547024289832 3830 0.23276870461457 4 2 2 -6.80906435990814 LTS-024 NA NA NA NA LTS-024 chr11 47283459 47433845 150387 * c(NR1H3, MYBPC3, SPI1, MADD, SLC39A13) 0.300256451132931 6 0.148690842578374 1.40702577477241 477 0.3838509866999 7 5 2 -6.75280895959196 LTS-024 chr11 47433846 47433894 49 * SLC39A13 NA 0 NA 1.011 1 NA NA NA NA NA LTS-024 chr11 47433895 48328644 894750 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2, SLC39A13) 0.415880713017657 29 0.104420415401919 0.977587301867194 1333 0.592050631715443 4 2 2 -6.75762960851772 LTS-024 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.956294928889671 4 0.0956974398821619 4 NA NA -5.76911925909969 LTS-024 chr11 48346420 48346423 4 * character(0) 0.318 1 NA 2.631 1 NA NA NA NA NA LTS-024 chr11 48346424 48387960 41537 * c(OR4C3, OR4C45) 0.309384714335788 105 0.0754551658356275 2.03633427247141 178 1.32956913831868 17 12 5 -6.73719053405478 LTS-024 chr11 48387961 48387985 25 * character(0) NA 0 NA 1.032 1 NA NA NA NA NA LTS-024 chr11 48387986 48388717 732 * character(0) 0.350747812287041 6 0.0116561857683664 1.32741609522768 10 0.576148215884304 12 8 4 -6.74063620078023 LTS-024 chr11 48388718 48453787 65070 * character(0) 0.42 1 NA 0.974264721192049 3 0.374182219424351 4 4 0 -5.76497474362286 LTS-024 chr11 48453788 51516257 3062470 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.448250305937958 29 0.0443057002415223 1.09676761269783 475 0.688715677350452 4 2 2 -6.80018715809463 LTS-024 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.943235062755886 6 0.130610872441769 4 NA NA -5.7668186762596 LTS-024 chr11 55035776 55111500 75725 * c(TRIM51HP, TRIM48, OR4A16) 0.469 1 NA 0.759060029612429 19 0.585779332940814 3 3 0 -5.76541131855136 LTS-024 chr11 55111501 55340582 229082 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.430674182845902 9 0.157578551840027 1.14081985392845 82 0.735399201895644 4 2 2 -6.73692017777988 LTS-024 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.491 1 NA NA NA NA NA LTS-024 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.567945152093074 68 0.137109387704357 2 NA NA -5.78477086519434 LTS-024 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.925 1 NA NA NA NA NA LTS-024 chr11 55432533 55889987 457455 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR5L2, OR10AG1, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, TRIM51) 0.463317652683261 2 0.0502045814642449 1.08902663413313 334 0.231487393236865 4 2 2 -6.92943425682606 LTS-024 chr11 55889988 55890732 745 * OR8H3 0.066 1 NA 1.13114675864193 19 0.541007042359932 5 5 0 -5.76441709324079 LTS-024 chr11 55890733 56468835 578103 * c(OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5J2, OR5AP2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3) 0.308590577167383 42 0.127724180632465 1.21548247632243 557 0.649555719134578 4 3 1 -6.75898516535265 LTS-024 chr11 56468836 56510623 41788 * c(OR9G4, OR8U8) 0.477 1 NA 0.986810920737408 13 0.456255986964583 4 4 0 -5.76453504789122 LTS-024 chr11 56510624 56958810 448187 * c(OR5AK4P, LRRC55, OR9G4, OR5AK2) 0.473548067924195 11 0.0210915752245902 1.0957961315539 189 0.328405774884666 4 2 2 -8.22576210277428 LTS-024 chr11 56958811 59946311 2987501 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A2, DTX4, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, SLC43A3, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, P2RX3, TMX2, MRPL16, NA NA NA NA NA NA NA NA NA LTS-024 PRG2, FAM111A, MS4A6A, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A3, LPXN) 0.436488308628651 40 0.0792104467339686 1.01423664956173 3468 0.230081602414947 4 2 2 -6.73384131634842 LTS-024 NA NA NA NA LTS-024 chr11 59946312 60666116 719805 * c(PTGDR2, MS4A15, ZP1, MS4A6E, PRPF19, LINC00301, MS4A10, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, CCDC86, MS4A8, MS4A14, MS4A1) 0.462148797374979 41 0.0435081012921591 1.06893801884935 890 0.325022440170172 4 2 2 -6.95329135850653 LTS-024 chr11 60666117 60666341 225 * PRPF19 0.496 1 NA 0.965827035277383 3 0.451673923680937 4 4 0 -5.76441203430228 LTS-024 chr11 60666342 62376943 1710602 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, RPLP0P2, DDB1, EEF1G, VWCE, CYB561A3, PPP1R32, FEN1, FTH1, EML3, TKFC, DKFZP434K028, PRPF19, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, TUT1, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CPSF7, ASRGL1, SYT7, CD5, MTA2, CD6, FADS2) 0.440401944330477 39 0.0865447003299201 1.0598914912099 3661 0.26151360369713 4 2 2 -6.75767812106304 LTS-024 chr11 62376944 63782873 1405930 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, PLA2G16, CHRM1, SLC22A9, HRASLS5, COX8A, C11orf84, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, RCOR2, MACROD1, TMEM179B, SLC22A25, SLC22A10, UBXN1, POLR2G, WDR74, HRASLS2, OTUB1, RARRES3, ROM1, SLC3A2, C11orf95, STX5, SNORA57, METTL12, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, INTS5, LGALS12, SNORD29, SNORD31, SNORD30, SNORD28, NA NA NA NA NA NA NA NA NA LTS-024 SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.44991376073966 73 0.0651140025903287 0.999286028524303 3137 0.25273613326891 4 2 2 -6.76582317331452 LTS-024 NA NA NA NA LTS-024 chr11 63782874 63883609 100736 * c(FLRT1, MACROD1) NA 0 NA 1.977 1 NA NA NA NA NA LTS-024 chr11 63883610 63918783 35174 * c(FLRT1, MACROD1) NA 0 NA 1.46521507818087 70 0.284644285658746 6 NA NA -5.76492867576379 LTS-024 chr11 63918784 68855483 4936700 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CHKA, CDCA5, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, CPT1A, CST6, CTSW, GRK2, GPHA2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, ALDH3B2, FKBP2, KDM2A, ATG2A, CLCF1, NA NA NA NA NA NA NA NA NA LTS-024 FAM89B, POLA2, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, MALAT1, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, GAL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 KMT5B, CABP2, TRMT112, PLCB3, C11orf24, SSH3, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.456686301977251 192 0.0535013942565138 1.0282701194271 12416 0.240044377640964 4 2 2 -6.82645637797932 LTS-024 NA NA NA NA LTS-024 chr11 68855484 68856011 528 * TPCN2 NA 0 NA 0.995173145894059 11 0.093258097381797 4 NA NA -5.76443067082832 LTS-024 chr11 68856012 69062621 206610 * c(TPCN2, MYEOV) NA 0 NA 1.339 1 NA NA NA NA NA LTS-024 chr11 69062622 69462910 400289 * c(MYEOV, CCND1) 0.384 1 NA 1.43485300519686 69 0.286369550025113 6 6 0 -5.7660520062142 LTS-024 chr11 69462911 69924507 461597 * c(ORAOV1, FGF3, FGF4, ANO1, CCND1, FGF19) 0.413538347592985 4 0.0223364425696364 1.3898973127529 291 0.376476173429147 5 3 2 -6.77038573095988 LTS-024 chr11 69924508 69924584 77 * ANO1 NA 0 NA 1.574 1 NA NA NA NA NA LTS-024 chr11 69924585 70653249 728665 * c(MIR548K, SHANK2-AS1, CTTN, SHANK2, ANO1, PPFIA1, FADD) 0.247384144195557 6 0.0445271452786574 1.66419251164382 776 0.388820942644523 9 7 2 -6.85087557978744 LTS-024 chr11 70653250 77705759 7052510 * c(KCNE3, LOC100129216, LOC100133315, MIR3165, MIR3664, TPBGL, MIR4696, MIR4692, IL18BP, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, CLNS1A, XRRA1, DHCR7, B3GNT6, GDPD4, SHANK2-AS3, LRTOMT, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, ALG1L9P, AAMDC, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, NA NA NA NA NA NA NA NA NA LTS-024 FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NUMA1, OMP, P2RY2, P2RY6, PAK1, COA4, PDE2A, PPME1, MRPL48, RSF1, LAMTOR1, NADSYN1, FAM86C1, RNF121, ACER3, THAP12, EMSY, KRTAP5-8, PLEKHB1, RAB6A, SNORD15A, RPS3, CAPN5, UCP2, UCP3, UVRAG, WNT11, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, SERPINH1, ATG16L2, INTS4, SPCS2, ARHGEF17, FCHSD2) 0.366504725493593 150 0.0749876675915963 1.33957357506304 7800 0.324975272218492 6 4 2 -6.81471048203657 LTS-024 NA NA NA NA LTS-024 chr11 77705760 77726774 21015 * c(NDUFC2-KCTD14, KCTD14) NA 0 NA 1.877 1 NA NA NA NA NA LTS-024 chr11 77726775 78781161 1054387 * c(KCTD21-AS1, NDUFC2-KCTD14, TENM4, KCTD21, NDUFC2, USP35, KCTD14, THRSP, ALG8, NARS2, GAB2) 0.422341749573458 10 0.147794902934213 1.7099508973089 964 0.376183443147568 8 4 4 -6.74597270330664 LTS-024 chr11 78781162 83436042 4654881 * c(MIR708, SNORA70E, MIR4300, RAB30-AS1, MIR5579, DLG2, DDIAS, FAM181B, TENM4, RAB30, ANKRD42, PCF11, PRCP, CCDC90B) 0.442726315322031 25 0.0574905789383501 1.55271280492715 1138 0.40266038167689 7 4 3 -6.79911815775639 LTS-024 chr11 83436043 83497436 61394 * DLG2 NA 0 NA 1.302 1 NA NA NA NA NA LTS-024 chr11 83497437 94226164 10728728 * c(NAALAD2, MIR1304, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, DEUP1, DLG2, FOLH1B, CCDC83, CCDC89, RAB38, PANX1, CHORDC1, C11orf54, GRM5, HEPHL1, VSTM5, TRIM77, IZUMO1R, MRE11A, MTNR1B, NOX4, HIKESHI, SYTL2, TMEM126B, SMCO4, TRIM49, CREBZF, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TYR, TAF1D, PICALM, FZD4, TMEM126A, NA NA NA NA NA NA NA NA NA LTS-024 CEP295, OR7E2P, EED, MED17) 0.374907333982276 114 0.0792219598699292 1.2726781885441 4456 0.358996346755902 5 3 2 -6.99409679628111 LTS-024 NA NA NA NA LTS-024 chr11 94226165 94229711 3547 * c(MRE11A, ANKRD49) NA 0 NA 1.98 1 NA NA NA NA NA LTS-024 chr11 94229712 94964070 734359 * c(SESN3, PIWIL4, AMOTL1, ENDOD1, FUT4, KDM4E, CWC15, ANKRD49, KDM4D, C11orf97) 0.461989385431213 13 0.0271543546113505 1.61835797711295 1013 0.361536887898715 8 4 4 -7.27328776097342 LTS-024 chr11 94964071 100229099 5265029 * c(MIR1260B, JRKL-AS1, FAM76B, SESN3, CNTN5, CCDC82, MAML2, JRKL, MTMR2, CEP57) 0.380963700460083 7 0.034698703145795 1.27844169552495 867 0.302867491725735 6 4 2 -7.17086825707102 LTS-024 chr11 100229100 100784371 555272 * c(ARHGAP42, CNTN5) NA 0 NA 1.28394800509729 31 0.263833341824085 5 NA NA -5.78111583336982 LTS-024 chr11 100784372 100792295 7924 * ARHGAP42 NA 0 NA 2.767 1 NA NA NA NA NA LTS-024 chr11 100792296 100830579 38284 * ARHGAP42 0.226 1 NA 1.88098704478615 41 0.543327665814124 9 9 0 -5.76459338205813 LTS-024 chr11 100830580 100962632 132053 * c(ARHGAP42, PGR, TMEM133) 0.248590804178644 14 0.0384736958807609 1.99927048240935 345 0.392198958914705 9 7 2 -6.76944222791688 LTS-024 chr11 100962633 100996733 34101 * PGR NA 0 NA 1.144 1 NA NA NA NA NA LTS-024 chr11 100996734 101390583 393850 * c(MIR3920, LOC101054525, PGR, TRPC6) 0.252815942460042 4 0.268410599641668 1.29355157347538 180 0.360510813195372 5 4 1 -6.7419808663595 LTS-024 chr11 101390584 101765654 375071 * c(MIR3920, ANGPTL5, TRPC6) 0.368 1 NA 1.28286549812714 39 0.256503153482153 5 5 0 -5.7760204080768 LTS-024 chr11 101765655 111784816 10019162 * c(LOC100132078, WTAPP1, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, YAP1, CARD16, TMEM123, COLCA2, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, FDX1, EXPH5, SIK2, ANGPTL5, GRIA4, GUCY1A2, BIRC2, BIRC3, HSPB2, C11orf53, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, ATM, NPAT, POU2AF1, SLC35F2, RAB39A, BTG4, PPP2R1B, ELMOD1, CEP126, NA NA NA NA NA NA NA NA NA LTS-024 ARHGAP20, CARD18, RDX, AASDHPPT, MMP27, LOC643733, LOC643923, C11orf1, SLN, DYNC2H1, ALG9, PDGFD, CUL5, CASP1, CASP4, CASP5, DCUN1D5, MSANTD4, C11orf70, ZC3H12C, ALKBH8, FDXACB1, MMP20) 0.38899290843347 113 0.0563893603062866 1.26236169852891 6609 0.320219263689969 5 3 2 -6.94434358918573 LTS-024 NA NA NA NA LTS-024 chr11 111784817 111954361 169545 * c(HSPB2-C11orf52, PIH1D2, DLAT, HSPB2, C11orf57, DIXDC1) 0 1 NA 1.24766839444638 411 0.375824320619543 5 5 0 -5.76507996605349 LTS-024 chr11 111954362 112131269 176908 * c(TIMM8B, PLET1, IL18, C11orf57, TEX12, PTS, SDHD, BCO2) 0.359 1 NA 1.27287229115718 270 0.530178554010429 5 5 0 -5.76537291212034 LTS-024 chr11 112832102 114392515 1560414 * c(NCAM1-AS1, MIR4301, RBM7, NXPE1, DRD2, ANKK1, REXO2, HTR3A, NCAM1, NNMT, C11orf71, TTC12, USP28, CLDN25, ZBTB16, TMPRSS5, HTR3B, ZW10) 0.275948069430413 24 0.025749595466078 1.82769040666923 1312 0.387009517570655 8 6 2 -6.82176214780126 LTS-024 chr11 114392516 117097952 2705437 * c(LOC100652768, APOA5, NXPE1, NXPE2, SIK3, CADM1, LINC00900, APOA1, APOA4, APOC3, PAFAH1B2, SIDT2, NXPE4, TAGLN, BUD13, ZPR1, PCSK7) 0.301992899381352 30 0.125319985838551 1.30721823851266 1243 0.375119329584933 5 4 1 -6.85788699548799 LTS-024 chr11 117097953 117100594 2642 * PCSK7 0.383 1 NA 1.36543738861004 21 0.299520195678101 6 6 0 -5.76442198956958 LTS-024 chr11 117100595 117261618 161024 * c(BACE1-AS, CEP164, BACE1, RNF214, PCSK7) 0.425 1 NA 1.26694825759313 439 0.264644414145792 5 5 0 -5.76730652254963 LTS-024 chr11 117261619 119025714 1764096 * c(LOC100131626, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, KMT2A, FXYD2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, UPK2, TMPRSS13, TMEM25, CD3D, CD3E, CD3G, UBE4A, C2CD2L) 0.44608108900904 91 0.0880103792857801 1.636408981857 4043 0.501289594648982 7 4 3 -6.76970406522298 LTS-024 chr11 119025715 119027054 1340 * ABCG4 NA 0 NA 2.051 1 NA NA NA NA NA LTS-024 chr11 119027055 123525272 4498218 * c(USP2-AS1, MIR4493, TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, CCDC153, GRIK4, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, SCN3B, CRTAM, GRAMD1B, NECTIN1, SC5D, ABCG4, LOC649133, SORL1, TECTA, THY1, RNF26, NLRX1, CLMP, PDZD3, C11orf63, MFRP, UBASH3B, CBL, USP2) 0.46104029046797 88 0.0580849376267321 1.70183477441373 3894 0.504372719767596 8 4 4 -6.86664421757188 LTS-024 chr11 123525273 123595897 70625 * c(SCN3B, ZNF202) 0 1 NA 1.5845527065152 25 1.85585395258715 7 7 0 -5.76441043161319 LTS-024 chr11 123595898 124252892 656995 * c(OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B2, OR8D1, OR8D2, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, VWA5A, ZNF202) 0.424920794614645 54 0.0966451233855792 1.83316978431377 676 0.800245664333847 9 5 4 -6.7384207952723 LTS-024 chr11 124252893 124253100 208 * OR8B2 0.223 1 NA 2.13167102557451 5 2.3674201570486 10 10 0 -5.76441014017904 LTS-024 chr11 124253101 124440215 187115 * c(OR8B12, OR8B8, OR8B2, OR8B4, OR8B3, OR8A1) 0.342226644113633 8 0.0812684045089392 1.70014355912119 117 0.580486320855423 9 6 3 -6.75349280716044 LTS-024 chr11 124440216 124440265 50 * OR8A1 NA 0 NA 2.141 1 NA NA NA NA NA LTS-024 chr11 124440266 124952248 511983 * c(PANX3, SLC37A2, HEPACAM, VSIG2, OR8A1, NRGN, SPA17, SIAE, ROBO4, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM) 0.399155022529638 16 0.0471783407225533 1.99966382912217 1118 0.493566549894439 10 6 4 -6.75408970895938 LTS-024 chr11 124952249 125859623 907375 * c(PATE3, CHEK1, PATE1, HYLS1, TMEM218, SLC37A2, DDX25, STT3A, PATE2, PATE4, CDON, ACRV1, PKNOX2, PUS3, EI24, FEZ1) 0.354743709622751 51 0.0667380891921518 2.31145512878778 1233 2.42016111231124 9 6 3 -6.73537462689732 LTS-024 chr11 125859624 126228435 368812 * c(TIRAP, DCPS, ST3GAL4-AS1, CDON, FOXRED1, ST3GAL4, SRPRA, FAM118B, RPUSD4) 0.275994416885529 4 0.0249064917909635 2.69040125786013 500 0.556081576500649 12 9 3 -6.73609192432864 LTS-024 chr11 126228436 132082084 5853649 * c(MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, TMEM45B, ADAMTS15, ETS1, C11orf45, FLI1, KIRREL3-AS3, C11orf44, ZBTB44, APLP2, KCNJ1, KCNJ5, SNX19, LINC00167, NFRKB, NTM, PRDM10, TP53AIP1, ST3GAL4, ST14, KIRREL3, BARX2, ARHGAP32) 0.371459179696024 51 0.0427974252478246 2.0272672191189 2738 0.587369010688357 9 6 3 -6.83602707890035 LTS-024 chr11 132082085 132177510 95426 * NTM NA 0 NA 1.707 1 NA NA NA NA NA LTS-024 chr11 132177511 132287565 110055 * c(OPCML, NTM) 0 1 NA 1.70343224040434 131 0.859188097067285 8 8 0 -5.76459857163439 LTS-024 chr11 132287566 133712473 1424908 * c(SPATA19, OPCML) 0.482 1 NA 1.76187106176019 125 0.401218491999784 8 8 0 -5.76519630767178 LTS-024 chr11 133712474 134856661 1144188 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, LOC283177, THYN1, JAM3, GLB1L2) 0.447982123680804 30 0.036726137768656 1.66617103931579 1074 0.388946156930433 8 4 4 -6.81829808198479 LTS-024 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.44 1 NA NA NA NA NA LTS-024 chr12 90923 248071 157149 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.13 1 NA 1.64521084219326 43 0.322972027012492 7 7 0 -5.76537378234427 LTS-024 chr12 248072 520947 272876 * c(IQSEC3, LOC574538, KDM5A, SLC6A12, SLC6A13, CCDC77) 0.109457986676609 15 0.0474550413800362 1.65972649560269 643 0.617130456515089 5 5 0 -6.78022462656583 LTS-024 chr12 520948 547692 26745 * CCDC77 NA 0 NA 1.42545594961637 33 0.183980977277544 6 NA NA -5.76454891278542 LTS-024 chr12 547693 549836 2144 * CCDC77 NA 0 NA 2.326 1 NA NA NA NA NA LTS-024 chr12 549837 619808 69972 * c(B4GALNT3, CCDC77) 0.279 1 NA 1.88303494451472 33 0.479046088913197 9 9 0 -5.76482185766039 LTS-024 chr12 619809 2558228 1938420 * c(LINC00940, LINC00942, MIR3649, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, ERC1, B4GALNT3, NINJ2, RAD52, WNK1, LRTM2, CACNA1C, ADIPOR2, WNT5B, CACNA2D4) 0.247269588453563 66 0.0322605830921455 1.97493133859153 1638 1.52017068691072 9 7 2 -6.79974435728122 LTS-024 chr12 2558229 3702913 1144685 * c(LOC100507424, CACNA1C-AS1, TSPAN9, FKBP4, FOXM1, LOC283440, ITFG2, PRMT8, TEAD4, TULP3, CACNA1C, RHNO1, NRIP2) 0.2084034297657 25 0.0398225229403328 2.36423630935348 1181 0.548398384289758 11 9 2 -6.7562530804967 LTS-024 chr12 3702914 3725942 23029 * c(PRMT8, CRACR2A) NA 0 NA 2.22040393285309 13 0.357765662453468 10 NA NA -5.76447754306656 LTS-024 chr12 3725943 3726116 174 * CRACR2A NA 0 NA 1.775 1 NA NA NA NA NA LTS-024 chr12 3726117 3751046 24930 * CRACR2A 0.309 1 NA 1.53865941817635 43 0.353339916150886 7 7 0 -5.76455110879547 LTS-024 chr12 3751047 3951657 200611 * c(PARP11, CRACR2A) 0.267600644441795 4 0.0320767309223784 1.61884888294502 208 0.456713613710938 5 4 1 -6.79286889925642 LTS-024 chr12 3951658 5685138 1733481 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PARP11, ANO2, C12orf4, TIGAR, FGF23, DYRK4, CCND2) 0.318665724379133 24 0.132556079190789 1.35122900904902 1165 0.447396921003136 6 4 2 -6.80549313239584 LTS-024 chr12 5685139 5687045 1907 * ANO2 NA 0 NA 0.895 1 NA NA NA NA NA LTS-024 chr12 5687046 5841841 154796 * ANO2 0.406 1 NA 1.18239547419623 37 0.357169780709752 5 5 0 -5.76480318342273 LTS-024 chr12 5841842 6078424 236583 * c(ANO2, VWF) 0.458 1 NA 1.14888855268981 153 0.22354283759673 5 5 0 -5.77207639496229 LTS-024 chr12 6078425 7309199 1230775 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, CLSTN3, NCAPD2) 0.44523797934611 88 0.0531346105081782 1.09758171329746 3666 0.256681365426364 4 2 2 -6.81259549377965 LTS-024 chr12 7309200 7309471 272 * CLSTN3 0.047 1 NA 1.21561302936892 7 0.190300514224964 5 5 0 -5.7644102243739 LTS-024 chr12 7309472 7655278 345807 * c(CD163L1, ACSM4, PEX5, CD163, CLSTN3) 0.428335986030258 17 0.101396172627617 1.14731681086168 497 0.334638866798515 5 3 2 -6.75162427353191 LTS-024 chr12 7655279 7655319 41 * CD163 NA 0 NA 0.856 1 NA NA NA NA NA LTS-024 chr12 7655320 9453743 1798424 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.439374606092865 46 0.0738748909773017 1.02618045974645 2062 0.28507672313376 4 2 2 -6.73499926022031 LTS-024 chr12 9453744 9453864 121 * LOC642846 0.215 1 NA 0.893952153010665 3 0.0325115364140177 3 3 0 -5.76480987736799 LTS-024 chr12 9453865 9549854 95990 * LOC642846 0.339145587288977 9 0.0624388589830973 1.18096235744288 59 0.394338690623007 7 5 2 -6.82260119000239 LTS-024 chr12 9549855 9555021 5167 * character(0) NA 0 NA 0.714 1 NA NA NA NA NA LTS-024 chr12 9555022 9692981 137960 * DDX12P 0.154216522881704 6 0.160270292526927 0.961320982634276 92 0.549436345302545 3 3 0 -6.73913527775547 LTS-024 chr12 9692982 9747288 54307 * character(0) 0.431 1 NA 0.97005732318043 77 0.271050997413598 4 4 0 -5.76548910156475 LTS-024 chr12 9747289 10573094 825806 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.441034401978212 30 0.0473135906697956 0.95600615533323 1094 0.273332173455764 4 2 2 -6.76708889229095 LTS-024 chr12 10573095 10573097 3 * KLRC3 NA 0 NA 1.34 1 NA NA NA NA NA LTS-024 chr12 10573098 10600248 27151 * c(KLRC1, KLRC2, KLRC3) 0.458584389330978 6 0.0210142808585019 1.52574177345281 110 0.566382690304501 6 3 3 -7.36237376381185 LTS-024 chr12 10600249 10601795 1547 * KLRC1 NA 0 NA 0.865 1 NA NA NA NA NA LTS-024 chr12 10601796 11150054 548259 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.458799735973478 16 0.0252388589282479 0.976843474929131 590 0.237090920482856 4 2 2 -7.20113001410215 LTS-024 chr12 11150055 11174202 24148 * c(PRH1-PRR4, TAS2R20, PRB4) 0.26 1 NA 1.11979268407266 9 0.379570407756512 5 5 0 -5.76501616957954 LTS-024 chr12 11174203 11214038 39836 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.283813897691313 22 0.0793020009792146 1.16573042651578 72 0.479281814700885 8 6 2 -6.75212418916305 LTS-024 chr12 11214039 11214066 28 * c(PRH1-PRR4, TAS2R46, PRB4) 0.254 1 NA 2.133 1 NA NA NA NA NA LTS-024 chr12 11214067 11244927 30861 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) 0.247955082398461 13 0.0223712842495544 1.62532610058361 50 0.506885689323358 13 10 3 -6.82617218155184 LTS-024 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.283 1 NA NA NA NA NA LTS-024 chr12 11285579 11461553 175975 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB3, PRB4) 0.234683525269441 5 0.089295576598172 1.06435720485404 91 0.460911176449772 6 5 1 -6.77447978064047 LTS-024 chr12 11461554 12044195 582642 * c(ETV6, LINC01252, PRB1, PRB4, PRB2) 0.495 1 NA 1.03146903617894 117 0.193892500242936 4 4 0 -5.76576140029658 LTS-024 chr12 12044196 19423103 7378908 * c(LOC100506314, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, PIK3C2G, PLEKHA5, MANSC1, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, NA NA NA NA NA NA NA NA NA LTS-024 HTR7P1, CAPZA3) 0.439293863246729 87 0.0964411448151591 1.07128463984798 3706 0.283114821780145 4 2 2 -6.86841522996228 LTS-024 NA NA NA NA LTS-024 chr12 19423104 20094558 671455 * c(AEBP2, PLEKHA5) NA 0 NA 1.13184750883408 221 0.270890840354387 5 NA NA -5.78890120329025 LTS-024 chr12 20094559 20095853 1295 * character(0) NA 0 NA 1.392 1 NA NA NA NA NA LTS-024 chr12 20095854 20836682 740829 * c(LOC100506393, PDE3A) NA 0 NA 1.68223708383671 186 0.412461534881092 7 NA NA -5.77227742961441 LTS-024 chr12 20836683 21069049 232367 * c(SLCO1B3, SLCO1B7, PDE3A, SLCO1C1) 0.396 1 NA 1.43341007495049 171 0.367118141320968 6 6 0 -5.76494193708555 LTS-024 chr12 21069050 34180172 13111123 * c(MIR920, MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, RASSF8, FGD4, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, GYS2, IAPP, SLCO1B7, SMCO2, OVCH1, SYT10, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, H3F3C, TSPAN11, GOLT1B, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, NA NA NA NA NA NA NA NA NA LTS-024 ASUN, CMAS, ARNTL2, PTHLH, KLHL42, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, C12orf71, BHLHE41, FLJ13224, PYROXD1, SPX, SSPN, TMTC1, ALG10, PPFIBP1, MED21, C2CD5) 0.345231224985077 177 0.0869269181474487 1.36595272355203 7330 0.391292912359371 6 4 2 -6.79056516125989 LTS-024 NA NA NA NA LTS-024 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.35925521405936 13 0.310349658057505 6 NA NA -5.76442455803484 LTS-024 chr12 38710341 38710523 183 * character(0) 0.353 1 NA 0.842977880678452 3 0.227534612751555 3 3 0 -5.76441081023361 LTS-024 chr12 38710524 40758642 2048119 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.344179863768423 15 0.0424194474717614 1.27513069301007 1093 0.30677037998796 6 4 2 -6.95971410526555 LTS-024 chr12 40758643 40758652 10 * LRRK2 0.31 1 NA 2.01 1 NA NA NA NA NA LTS-024 chr12 40758653 41831632 1072980 * c(LRRK2, CNTN1, PDZRN4) 0.340574488884765 39 0.0882490342031389 1.40959438513012 915 0.434391040783084 6 4 2 -6.77075258606732 LTS-024 chr12 41831633 41968434 136802 * PDZRN4 0.375812879317595 2 0.0459619407771256 2.23736321669602 93 0.510153741642852 11 7 4 -6.73414028436019 LTS-024 chr12 42475690 42478734 3045 * GXYLT1 0.236090641623697 6 0.0229405027553161 1.23024287252806 79 0.677782694560074 10 8 2 -6.73496958797352 LTS-024 chr12 42478735 42478757 23 * GXYLT1 0.218 1 NA 3.483 1 NA NA NA NA NA LTS-024 chr12 42478758 49658998 7180241 * c(PCED1B-AS1, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, ADCY6, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, PRICKLE1, ANO6, ARID2, DDN, ANP32D, LINC00935, RND1, GXYLT1, SENP1, H1FNT, OR8S1, AMIGO2, ARF3, CCDC184, LALBA, LINC00938, DBX2, NELL2, DHH, PLEKHA8P1, IRAK4, FKBP11, PPHLN1, HDAC7, PFKM, SLC38A2, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, TWF1, RNY5, SNORA2A, SNORA2B, SNORA2C, VDR, WNT1, NA NA NA NA NA NA NA NA NA LTS-024 WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, ADAMTS20, KMT2D, SLC38A1, PUS7L, RACGAP1P, TMEM117, TUBA1C, ZCRB1, CCDC65, ENDOU, CCNT1, PCED1B, SCAF11, DDX23) 0.11038098598507 102 0.040897317331811 0.981762395431382 6336 0.247493376161437 4 4 0 -6.90555465715527 LTS-024 NA NA NA NA LTS-024 chr12 49658999 58203354 8544356 * c(HOTAIR, AGAP2-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1228, MIR1293, LOC100335030, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, MCRS1, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, GALNT6, NXPH4, KRT71, GPR182, LARP4, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, KRT74, MYL6B, KRT72, CS, BCDIN3D, KRT80, CYP27B1, NA NA NA NA NA NA NA NA NA LTS-024 DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, EIF4B, CELA1, ERBB3, COPZ1, R3HDM2, FAIM2, NEMP1, ESYT1, TNS2, KCNH3, CBX5, SMUG1, STAC3, OR6C74, OR6C3, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, TMPRSS12, KRT6C, ORMDL2, RACGAP1, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, OR6C2, OR6C4, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, FIGNL2, OR6C65, OR6C68, LRP1, MIR196A2, ASIC1, MARS, METTL1, MIP, MMP19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NFE2, SLC11A2, PA2G4, ATP5B, PCBP2, KRT76, CSAD, BIN2, LIMA1, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, POU6F1, PPP1R1A, PRIM1, PRPH, NDUFA4L2, SMAGP, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, TMBIM6, TFCP2, MAP3K12, NABP2, PIP4K2C, DNAJC22, AAAS, CSRNP2, INHBE, FAM186B, PYM1, SARNP, SOAT2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, ACVR1B, FMNL3, CERS5, KRT75, MARCH9, COQ10A, ACVRL1, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.116209278699023 268 0.0434959521820651 1.01916741258996 18929 0.296591393913317 4 4 0 -6.75763177367132 LTS-024 NA NA NA NA LTS-024 chr12 58203355 58216989 13635 * c(CTDSP2, AVIL) 0.433 1 NA 0.919179713723307 111 0.171476751575473 4 4 0 -5.7673717100369 LTS-024 chr12 58216990 58220872 3883 * c(CTDSP2, MIR26A2) 0.376826049687217 15 0.0802486018273097 1.15645209927143 67 0.432138664049028 3 2 1 -6.73748964649811 LTS-024 chr12 58220873 59917126 1696254 * c(LOC100506844, CTDSP2, LRIG3, ATP23) 0.117 1 NA 1.00551140256972 243 0.251232744851943 4 4 0 -5.76731779339456 LTS-024 chr12 59917127 64521440 4604314 * c(TMEM5, MON2, LINC01465, DPY19L2, FAM19A2, MIRLET7I, AVPR1A, PPM1H, SRGAP1, SLC16A7, USP15) 0.112937592739477 14 0.0674841454721766 0.996766278899352 1206 0.271368504204802 4 4 0 -6.77062620394671 LTS-024 chr12 64521441 64891536 370096 * c(XPOT, C12orf56, C12orf66, TBK1, SRGAP1) 0.0881370268091111 2 0.0120208152801713 1.34310260616471 555 0.340812380907829 6 6 0 -6.76903795304382 LTS-024 chr12 64891537 64891701 165 * TBK1 NA 0 NA 0.898 1 NA NA NA NA NA LTS-024 chr12 64891702 66309319 1417618 * c(MIR548Z, WIF1, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, TBK1, FLJ41278, MIR548C, HMGA2) 0.121065188820354 20 0.0375771487111936 1.02397506619382 961 0.503115354340142 4 4 0 -6.73979481546415 LTS-024 chr12 66309320 66345145 35826 * HMGA2 NA 0 NA 1.879 1 NA NA NA NA NA LTS-024 chr12 66345146 66360090 14945 * HMGA2 0.0659416401136927 5 0.00985900603509299 1.34965116645378 212 0.555486167533793 9 9 0 -6.74909660942433 LTS-024 chr12 66360091 66500880 140790 * character(0) NA 0 NA 0.98 1 NA NA NA NA NA LTS-024 chr12 66500881 81331616 14830736 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, CCT2, FRS2, GLIPR1, CPSF6, KRR1, IRAK3, OSBPL8, RAB3IP, TPH2, CPM, GLIPR1L2, BEST3, E2F7, CSRP2, ZFC3H1, PHLDA1, RAB21, ZDHHC17, GRIP1, GLIPR1L1, KCNMB4, OTOGL, TRHDE-AS1, TRHDE, IFNG, PTPRQ, KCNC2, LRRC10, LYZ, MDM2, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, IL22, PAWR, TMBIM4, TMEM19, ATXN7L3B, SLC35E3, IL26, NA NA NA NA NA NA NA NA NA LTS-024 CAND1, MDM1, NUP107, PTPRB, PTPRR, RAP1B, TBC1D15, SYT1, MIR617, MIR618, TSPAN8, MRS2P2, BBS10, YEATS4, THAP2, LLPH, DYRK2, CAPS2, LGR5, LIN7A, NAV3, HELB) 0.133749431334822 160 0.0515428010303118 0.978524294773576 7939 0.333504080106424 4 4 0 -6.87942582574074 LTS-024 NA NA NA NA LTS-024 chr12 81331617 89742951 8411335 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, DUSP6, MGAT4C, CCDC59, MKRN9P, KITLG, NTS, SLC6A15, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, C12orf29, RASSF9) 0.111123724984561 27 0.0335997473196305 1.05568652950728 1945 0.410988845068298 4 4 0 -6.87108287065284 LTS-024 chr12 89742952 89743026 75 * DUSP6 NA 0 NA 0.787 1 NA NA NA NA NA LTS-024 chr12 89743027 106457206 16714180 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, NA NA NA NA NA NA NA NA NA LTS-024 C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, C12orf73, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TXNRD1, UBE2N, NUP37, GNPTAB, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, NUAK1, NR1H4) 0.122648648977953 183 0.0503328308658239 0.969234894727435 10217 0.543482971534435 4 4 0 -6.81866237089494 LTS-024 NA NA NA NA LTS-024 chr12 106457207 106457305 99 * NUAK1 NA 0 NA 1.032 1 NA NA NA NA NA LTS-024 chr12 106457306 117993155 11535850 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, LOC100287944, LOC100505978, MIR4472-2, MIR4497, ARPC3, TRAFD1, ERP29, CKAP4, SDS, PRDM4, PWP1, FICD, SDSL, IQCD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, RAD9B, FAM109A, PPTC7, CCDC63, DAO, DTX1, PLBD2, ALDH2, RPH3A, FBXO21, CUX2, MED13L, ISCU, CORO1C, TCP11L2, TBX5-AS1, FBXW8, MYO1H, HECTD4, KSR2, IFT81, FAM216A, ACACB, MMAB, TMEM119, CFAP73, C12orf76, NA NA NA NA NA NA NA NA NA LTS-024 MVK, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, TPCN1, SSH1, TESC, PPP1CC, RIC8B, SVOP, POLR3B, PTPN11, TRPV4, RFX4, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, LOC728739, UNG, DDX54, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, KCTD10, TCHP, HVCN1, RASAL1, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, HRK, ADAM1A, ANKRD13A, TMEM116, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, RBM19) 0.112433528923338 176 0.0331971359858398 1.05797487810965 11533 0.377273408768171 4 4 0 -6.88562356118545 LTS-024 NA NA NA NA LTS-024 chr12 117993156 117996301 3146 * KSR2 NA 0 NA 1.215 1 NA NA NA NA NA LTS-024 chr12 117996302 118828936 832635 * c(KSR2, PEBP1, TAOK3, VSIG10, WSB2, RFC5, SUDS3) 0.104335288854733 14 0.021092157805192 1.31303327307856 539 0.369138751417873 5 5 0 -6.75857234523029 LTS-024 chr12 118828937 118829020 84 * SUDS3 NA 0 NA 0.986 1 NA NA NA NA NA LTS-024 chr12 118829021 119659053 830033 * c(HSPB8, SUDS3, SRRM4) 0.143179559731906 14 0.109059742675872 1.12027697312153 397 0.40154972028597 4 4 0 -6.77713386865954 LTS-024 chr12 119659054 119722207 63154 * LINC00934 NA 0 NA 1.529 1 NA NA NA NA NA LTS-024 chr12 119722208 121124758 1402551 * c(MIR1178, PXN-AS1, NRAV, MIR4498, GCN1, RAB35, CIT, COX6A1, LINC00934, CCDC60, SIRT4, GATC, TMEM233, MSI1, POP5, TRIAP1, PLA2G1B, PRKAB1, PXN, RPLP0, COQ5, DYNLL1, SRSF9, BICDL1, CABP1, RNF10) 0.0776088322109561 31 0.0280998220634936 1.47157623104712 1815 0.468947617004313 7 7 0 -6.76122293223901 LTS-024 chr12 121124759 123480996 2356238 * c(CLIP1-AS1, MIR4700, CAMKK2, SPPL3, TMEM120B, WDR66, MLXIP, SETD1B, ABCB9, LRRC43, HCAR1, MORN3, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, P2RX4, P2RX7, ARL6IP4, ANAPC5, RHOF, ZCCHC8, DIABLO, PSMD9, PITPNM2, BCL7A, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, RNF34, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, HCAR3, HIP1R, KNTC1, MLEC) 0.112756821803864 88 0.0356503963172327 1.0498828209766 4436 0.325356398777386 4 4 0 -6.815164538654 LTS-024 chr12 123480997 123892095 411099 * c(MIR4304, LOC100507091, MPHOSPH9, KMT5A, SBNO1, PITPNM2, CDK2AP1, C12orf65) 0.246 1 NA 1.00652157336712 518 0.217602931459187 4 4 0 -5.76521455701048 LTS-024 chr12 123892096 124070612 178517 * c(MIR3908, TMED2, SNRNP35, RILPL2, RILPL1, KMT5A) 0.269588187160357 9 0.0811541742610939 1.04561395192537 228 0.20724659950507 5 4 1 -6.78958769588945 LTS-024 chr12 124070613 124070843 231 * TMED2 0.136 1 NA 0.879634200562774 5 0.427390570789764 3 3 0 -5.76441289648267 LTS-024 chr12 124070844 124233370 162527 * c(TMED2, EIF2B1, ATP6V0A2, GTF2H3, DDX55, TCTN2) 0.11014438071712 27 0.0331203881915674 1.01074809568454 542 0.324628168804546 5 5 0 -6.77570559283934 LTS-024 chr12 124233371 124235617 2247 * ATP6V0A2 NA 0 NA 1.301 1 NA NA NA NA NA LTS-024 chr12 124235618 132593149 8357532 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, RIMBP2, ATP6V0A2, ADGRD1, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, EP400, DHX37, RAN, SFSWAP, AACS, SNORA49, UBC, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.116287924928952 125 0.0361603989415618 1.11424798890773 4120 0.384607534627426 5 5 0 -7.01073468907132 LTS-024 chr12 132593150 133811662 1218513 * c(LOC100130238, ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, GALNT9, POLE, CHFR, FBRSL1, PXMP2, ANHX, ZNF10, ZNF140, NOC4L) 0.12992135692339 71 0.0357518217233645 1.01530227636102 2445 0.275409027550716 4 4 0 -6.74435189948198 LTS-024 chr12 133811663 133812708 1046 * ANHX NA 0 NA 0.845045473028342 21 0.119527641752262 3 NA NA -5.76442830275661 LTS-024 chr13 19271620 19271676 57 * character(0) 0.39 1 NA 0.428 1 NA NA NA NA NA LTS-024 chr13 19271677 22141024 2869348 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, LINC00417, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, ZDHHC20, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.293992420001098 29 0.125408838792529 0.730992423524941 1655 0.219492135089358 3 2 1 -7.52768482238707 LTS-024 chr13 22141025 24880809 2739785 * c(MIR2276, SACS-AS1, LINC00327, LINC00424, SPATA13-AS1, MICU2, SPATA13, FGF9, SACS, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1, TNFRSF19, SGCG, BASP1P1) 0.405255772445297 19 0.0519059540917556 0.800857911367089 1018 0.207929930212941 3 2 1 -6.88756196284499 LTS-024 chr13 24880810 24896629 15820 * c(SPATA13, C1QTNF9) 0.35727339146704 6 0.0570102329995823 1.4216440580619 69 0.677283245495676 9 6 3 -6.73699534121494 LTS-024 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.695 1 NA NA NA NA NA LTS-024 chr13 24995032 33347497 8352466 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, TPTE2P6, RASL11A, SHISA2, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, POMP, ATP8A2, UBL3, CENPJ, RNF17, RNF6, NA NA NA NA NA NA NA NA NA LTS-024 RPL21, SNORA27, TPTE2P1, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.332000576486069 114 0.0854791407998293 0.747649039844528 5605 0.362143425014918 3 2 1 -7.31006709851447 LTS-024 NA NA NA NA LTS-024 chr13 33347498 33349107 1610 * PDS5B NA 0 NA 0.883 1 NA NA NA NA NA LTS-024 chr13 33349108 41240256 7891149 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.322016144394319 68 0.0590198308215292 0.792815613625453 3110 0.201705746695227 3 2 1 -7.51820311481117 LTS-024 chr13 41240257 47224524 5984268 * c(TPT1-AS1, MIR320D1, OR7E37P, VWA8-AS1, CPB2-AS1, TPTE2P5, MIR5006, LINC00563, SMIM2-IT1, SLC25A15, MRPS31, WBP4, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, ERICH6B, SPERT, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, NUFIP1, SUGT1P3, SIAH3, RGCC, DNAJC15, GTF2F2, KCTD4, SERP2, LCP1, ENOX1, GPALPP1, TSC22D1-AS1, SNORA31, MIR621, TPT1, NAA16, RUBCNL, COG3, KBTBD7, TNFSF11, TSC22D1, NA NA NA NA NA NA NA NA NA LTS-024 KBTBD6, EPSTI1, MTRF1) 0.327368741377311 48 0.0711902854158392 0.739471526842262 3339 0.233092176981342 3 2 1 -7.81848667093553 LTS-024 NA NA NA NA LTS-024 chr13 47224525 47243071 18547 * LRCH1 NA 0 NA 1.092 1 NA NA NA NA NA LTS-024 chr13 47243072 48836243 1593172 * c(MED4-AS1, ESD, LRCH1, MED4, HTR2A, NUDT15, SUCLA2, ITM2B) 0.248713642439169 7 0.0320720914132373 1.0822955659307 500 0.248095411183077 5 4 1 -7.04038667001915 LTS-024 chr13 48836244 48877850 41607 * LINC00441 NA 0 NA 0.632 1 NA NA NA NA NA LTS-024 chr13 48877851 49865934 988084 * c(LINC00462, LPAR6, RCBTB2, FNDC3A, MLNR, CYSLTR2, RB1, CDADC1) 0.343500974243759 3 0.042193996413392 0.728628490785974 625 0.181407170200078 3 2 1 -7.4887494572168 LTS-024 chr13 49865935 49867290 1356 * CDADC1 0.384506441686377 3 0.0476060220280306 0.831619505335013 27 0.17728036449457 3 2 1 -6.7340267307993 LTS-024 chr13 49867291 49883444 16154 * c(CDADC1, CAB39L) 0.447 1 NA 0.868562329081383 23 0.236065024203447 3 3 0 -5.76480740399984 LTS-024 chr13 49883445 50285230 401786 * c(ARL11, KPNA3, PHF11, RCBTB1, CAB39L, SETDB2, EBPL) 0.441477191656679 31 0.0400744200180732 0.873532748443615 582 0.419154314315817 4 2 2 -6.77709354940748 LTS-024 chr13 50285231 50293793 8563 * KPNA3 NA 0 NA 0.464 1 NA NA NA NA NA LTS-024 chr13 50293794 52549817 2256024 * c(MIR3613, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, TRIM13, DLEU1, WDFY2, ST13P4, DLEU7, FAM124A, CTAGE10P, INTS6, KCNRG, LINC00282, GUCY1B2, KPNA3, MIR16-1, ATP7B, SPRYD7, LINC00371, SERPINE3, RNASEH2B, DHRS12, CCDC70, DLEU2) 0.375955203548227 10 0.0593506529028957 0.728694912287721 1179 0.173870046374391 3 2 1 -7.39481027034907 LTS-024 chr13 52549818 52585406 35589 * ATP7B NA 0 NA 1.083 1 NA NA NA NA NA LTS-024 chr13 52585407 53625781 1040375 * c(MIR759, MRPS31P5, OLFM4, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, NEK5, ALG11, NEK3, PCDH8, VPS36, ATP7B, THSD1, UTP14C) 0.476101168780257 3 0.0176918060129541 0.978973666353425 897 0.224056591272673 4 2 2 -8.88184406419146 LTS-024 chr13 53625782 54886066 1260285 * c(LINC00558, OLFM4) 0 1 NA 1.13144655847129 17 0.863770602886996 5 5 0 -5.768994506894 LTS-024 chr13 54886067 74261944 19375878 * c(MIR1297, MIR3169, MIR5007, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, LINC00348, PIBF1, KLF12, DACH1, DIS3, PCDH17, OR7E156P, LINC00550, MZT1, PCDH9, KLHL1, ATXN8OS, PCDH20, KLF5, PRR20B, PRR20D, PRR20E, BORA, TDRD3, DIAPH3) 0.36936448547466 16 0.208456870039504 1.01306610105439 1451 0.280157269808266 4 3 1 -6.78272122539698 LTS-024 chr13 74261945 74263054 1110 * KLF12 0.476 1 NA 1.00223782459582 25 0.284090789478763 4 4 0 -5.7644124319675 LTS-024 chr13 74263055 110960254 36697200 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TNFSF13B, SOX21, KLF12, SLITRK1, KCTD12, CLN5, NA NA NA NA NA NA NA NA NA LTS-024 METTL21EP, SLAIN1, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, MYO16, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, GPR18, UBAC2, LINC00347, IPO5, LIG4, LMO7, MIR19B1, MIR17HG, PCCA, POU4F1, NDFIP2, BIVM, ARGLU1, UGGT2, DNAJC3, RAP2A, RBM26, MIR4500HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CCDC168, CTAGE11P, SLC10A2, SLC15A1, BTF3P11, MIR622, MIR623, TPP2, LINC00460, FAM155A, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, RNF219, SLITRK6, STK24, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.445061406426419 180 0.0742874303993084 1.00186003914601 8615 0.406497756830279 4 2 2 -6.78073747553206 LTS-024 NA NA NA NA LTS-024 chr13 110960255 111176492 216238 * c(COL4A2-AS1, COL4A2, RAB20) 0.418110758367368 18 0.0450868443053155 1.30859738818726 328 0.343506994661706 5 3 2 -6.74682703365348 LTS-024 chr13 111176493 111213708 37216 * RAB20 NA 0 NA 1.099 1 NA NA NA NA NA LTS-024 chr13 111213709 114783707 3569999 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, TUBGCP3, ADPRHL1, TEX29, SPACA7, F7, F10, RASA3, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, PROZ, ARHGEF7) 0.449575998046258 89 0.0442899231559085 1.01326373698653 2797 0.263256603846932 4 2 2 -6.79080316284789 LTS-024 chr13 114783708 114784209 502 * RASA3 NA 0 NA 0.815 1 NA NA NA NA NA LTS-024 chr13 114784210 115091008 306799 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.435930536839764 2 0.0445477272147525 0.851728277464061 234 0.181153782598198 4 2 2 -6.90836852278824 LTS-024 chr13 115091009 115092817 1809 * CHAMP1 NA 0 NA 0.792146625093742 37 0.124553599302064 3 NA NA -5.76454734408813 LTS-024 chr14 19434116 20249456 815341 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.47 1 NA 1.91581888066881 87 0.445784356007416 9 9 0 -5.76665172024579 LTS-024 chr14 20249457 20404749 155293 * c(OR4N2, OR4K2, OR4K5, OR4K1) 0.442361350212985 6 0.0199699774661866 1.91540871451067 114 0.382863706812359 8 4 4 -6.79861988779638 LTS-024 chr14 20404750 22447248 2042499 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-024 TEP1, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.349503436498683 100 0.0533049583609122 1.3761459572422 3507 0.649725987792576 6 4 2 -6.77073161858412 LTS-024 NA NA NA NA LTS-024 chr14 22447249 22991095 543847 * character(0) 0.389147574482879 27 0.053575518498062 1.71402706409149 676 0.405900523618062 8 5 3 -6.73632016776518 LTS-024 chr14 22991096 22992443 1348 * character(0) NA 0 NA 1.388 1 NA NA NA NA NA LTS-024 chr14 22992444 23713651 721208 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.368472380008654 40 0.0506378228458146 1.32612733296259 1777 0.273726755089606 6 4 2 -6.75821305300765 LTS-024 chr14 23713652 23727682 14031 * character(0) NA 0 NA 1.686 1 NA NA NA NA NA LTS-024 chr14 23727683 24114895 387213 * c(MIR208B, BCL2L2-PABPN1, DHRS2, EFS, CMTM5, NGDN, MIR208A, MYH6, MYH7, SLC22A17, HOMEZ, BCL2L2, IL25, THTPA, PABPN1, JPH4, ZFHX2, AP1G2, PPP1R3E) 0.239860485387653 11 0.157265901060477 1.44511248066134 1554 0.328464725614896 6 5 1 -6.73889460520278 LTS-024 chr14 24114896 24403585 288690 * character(0) NA 0 NA 0.875 1 NA NA NA NA NA LTS-024 chr14 24403586 24470231 66646 * c(DHRS4, DHRS4L2, DHRS4-AS1, DHRS4L1) 0.390696682617279 23 0.0733145801869191 0.99423029092448 109 0.347390364344712 3 2 1 -6.75146678683406 LTS-024 chr14 24470232 24475564 5333 * c(DHRS4, DHRS4L2, DHRS4L1) 0.436 1 NA 0.777587021667416 25 0.515590923116379 3 3 0 -5.76445766985321 LTS-024 chr14 24475565 38064215 13588651 * c(SLC25A21-AS1, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, MIR4503, MIR548AI, PTCSC3, LINC00609, IRF9, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMA1, LTB4R, MIPOL1, MDP1, CTSG, FITM1, NOP9, COCH, SPTSSA, ADCY4, FOXG1, SCFD1, KHNYN, RALGAPA1, SFTA3, HECTD1, HEATR5A, NKX2-8, TINF2, CIDEB, IGBP1P1, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, FOXA1, DHRS4L2, LINC01551, NA NA NA NA NA NA NA NA NA LTS-024 ARHGAP5, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, PAX9, EMC9, PCK2, GMPR2, MBIP, PPP2R3C, RNF31, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, SDR39U1, PSME1, PSME2, NYNRIN, SNX6, RABGGTA, NPAS3, CBLN3, SRP54, MIR624, TGM1, NKX2-1, DHRS4L1, IPO4, NUBPL, DCAF11, BRMS1L, INSM2, ARHGAP5-AS1, SLC25A21, CARMIL3, CPNE6, AKAP6, KIAA0391, REC8) 0.458862400677716 134 0.0328447342550733 0.994162208698377 7601 0.249590377096541 4 2 2 -7.09238573407943 LTS-024 NA NA NA NA LTS-024 chr14 38064216 38092223 28008 * FOXA1 NA 0 NA 0.973627838104263 21 0.135636980489063 4 NA NA -5.76631333479277 LTS-024 chr14 38092224 38149349 57126 * character(0) NA 0 NA 0.524 1 NA NA NA NA NA LTS-024 chr14 38149350 38276632 127283 * character(0) 0.213 1 NA 0.64251829699249 96 0.151805045798302 2 2 0 -5.76466185923445 LTS-024 chr14 38276633 47504438 9227806 * c(SNORD127, LOC100288846, LINC00871, SEC23A, NA, C14orf28, TRAPPC6B, RPL10L, LRFN5, CLEC14A, MDGA2, FKBP3, FAM179B, FBXO33, LINC00639, MIA2, PNN, KLHL28, PRPF39, MIS18BP1, FANCM, SSTR1, FSCB, GEMIN2) 0.20085243966889 28 0.0666915033100665 0.623725449120025 1924 0.188968118792268 2 2 0 -6.80053484949822 LTS-024 chr14 47504439 48143920 639482 * MDGA2 0.0993568826024062 2 0.00353553390593273 1.20779987424227 57 0.598445548011544 15 14 1 -7.90573425856424 LTS-024 chr14 48143921 48144042 122 * MDGA2 NA 0 NA 0.747 1 NA NA NA NA NA LTS-024 chr14 48144043 56133942 7989900 * c(KTN1-AS1, MIR4308, MIR548Y, LINC00648, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, ATG14, SAMD4A, KLHDC2, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, TBPL2, KTN1, LGALS3, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, FBXO34, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, NA NA NA NA NA NA NA NA NA LTS-024 RPS29, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, NEMF, MAPK1IP1L, DLGAP5) 0.162921050444146 90 0.0529150686891931 0.673422905335919 5503 0.196071950259839 2 2 0 -7.37835675838914 LTS-024 NA NA NA NA LTS-024 chr14 56133943 56133977 35 * KTN1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-024 chr14 56133978 68963990 12830013 * c(OTX2-AS1, LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, EXOC5, WDR89, L3HYPDH, NAA30, GPHB5, RDH12, PPP1R36, SLC38A6, C14orf37, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, DAAM1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, TIMM9, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARG2, TOMM20L, KTN1, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, NA NA NA NA NA NA NA NA NA LTS-024 OTX2, RDH11, DACT1, ATP6V1D, JKAMP, DHRS7, SIX4, PIGH, TMEM260, PPM1A, C14orf105, PPP2R5E, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, RHOJ, PLEKHH1, TRMT5, RAD51B, ARID4A, RTN1, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, SNAPC1, SPTB, CCDC175, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5, KIAA0586) 0.175311160859013 164 0.0502396631587231 0.70371155154741 8793 0.324945628985859 2 2 0 -7.52389173034827 LTS-024 NA NA NA NA LTS-024 chr14 68963991 69012222 48232 * RAD51B NA 0 NA 1.11 1 NA NA NA NA NA LTS-024 chr14 69012223 69117512 105290 * RAD51B 0.147447059153118 3 0.00624499799839839 1.01932220146455 55 0.342415648144585 10 9 1 -7.02629906436748 LTS-024 chr14 69117513 69255644 138132 * c(RAD51B, ZFP36L1) 0.077 1 NA 0.888938739359085 31 0.275998274110234 3 3 0 -5.76988733951067 LTS-024 chr14 69255645 69787589 531945 * c(ACTN1-AS1, EXD2, GALNT16, ZFP36L1, ACTN1, DCAF5) 0.125837711222103 15 0.0273600334168551 0.947915527958324 561 0.282851247324567 4 4 0 -6.7543950778559 LTS-024 chr14 69787590 69819101 31512 * GALNT16 0.112 1 NA 1.09362649520156 67 0.167811875081481 4 4 0 -5.76775194225082 LTS-024 chr14 69819102 73404680 3585579 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, ERH, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, PLEKHD1, MAP3K9, COX16, SYNJ2BP, SLC39A9, CCDC177, GALNT16, SMOC1, SRSF5, SLC8A3, SLC10A1, DPF3, ADAM21, ADAM20, RGS6, SUSD6) 0.106732819181656 28 0.0373819659148817 1.02927545839226 2208 0.336170830001219 4 4 0 -6.87538773471787 LTS-024 chr14 73404681 73404752 72 * DCAF4 0.09 1 NA 2.543 1 NA NA NA NA NA LTS-024 chr14 73404753 73945505 540753 * c(DCAF4, HEATR4, ZFYVE1, PSEN1, RBM25, NUMB, PAPLN) 0.0801730365146572 13 0.0194702271067839 1.3744719282984 807 0.328139933394692 7 7 0 -6.7976014215466 LTS-024 chr14 73945506 73989983 44478 * HEATR4 0.0822197252645102 2 0.0169705627484771 1.92166836686145 139 0.451414706567927 7 7 0 -6.74756308955085 LTS-024 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.138 1 NA NA NA NA NA LTS-024 chr14 74003792 74010484 6693 * c(HEATR4, ACOT1) NA 0 NA 0.385147210218978 39 0.628435712976379 1 NA NA -5.76462796971566 LTS-024 chr14 74010485 74020989 10505 * c(HEATR4, ACOT1) NA 0 NA 0.148 1 NA NA NA NA NA LTS-024 chr14 74020990 74325690 304701 * c(MIR4505, ACOT2, ACOT4, PTGR2, HEATR4, ZNF410, ACOT1, ACOT6, DNAL1, ELMSAN1, PNMA1) 0.0928928126701565 5 0.0157638827704344 1.31129983429308 422 0.40429567088569 6 6 0 -6.74709335715551 LTS-024 chr14 74325691 74327196 1506 * c(PTGR2, ZNF410) NA 0 NA 1.047 1 NA NA NA NA NA LTS-024 chr14 74327197 74962233 635037 * c(MIR4709, NPC2, ISCA2, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.117643885786968 33 0.0347009409530967 1.01633525113145 1255 0.43398559124124 4 4 0 -6.76014171407264 LTS-024 chr14 74962234 74965714 3481 * c(ISCA2, LTBP2) 0.127 1 NA 0.972787980382657 45 0.237211255630882 4 4 0 -5.76449042807682 LTS-024 chr14 74965715 76455368 1489654 * c(BATF, TMED10, C14orf1, IFT43, JDP2, DLST, TTLL5, FOS, MLH3, PROX2, LTBP2, FCF1, PGF, FLVCR2, YLPM1, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1, AREL1) 0.123834716887252 60 0.0280063350379854 0.988957008657505 2385 0.239812060215371 4 4 0 -6.74811650765549 LTS-024 chr14 76455369 76488616 33248 * IFT43 NA 0 NA 1.889 1 NA NA NA NA NA LTS-024 chr14 76488617 80668904 4180288 * c(MIR1260A, AHSA1, IFT43, NOXRED1, LRRC74A, ISM2, SAMD15, DIO2, ESRRB, VASH1, SNW1, ANGEL1, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, GPATCH2L, ADCK1, TMEM63C, NGB, VIPAS39, IRF2BPL, SLIRP, CIPC, ALKBH1, NRXN3, SPTLC2) 0.113521624035991 75 0.0631445731406676 1.14780443015425 2741 0.318830180714447 5 5 0 -6.81152198586372 LTS-024 chr14 80668905 93762358 13093454 * c(SNORA11B, DIO2-AS1, LINC00911, FBLN5, PTPN21, FOXN3, CHGA, TTC8, TC2N, SLC24A4, CEP128, TTC7B, EML5, DIO2, FLRT2, GALC, TMEM251, LOC283585, LINC01146, FOXN3-AS2, GTF2A1, ITPK1-AS1, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, UBR7, PPP4R3A, BTBD7, TDP1, SPATA7, LGMN, KCNK13, PSMC1, SEL1L, MOAP1, SNORA79, TSHR, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, GON7, GPR65, NA NA NA NA NA NA NA NA NA LTS-024 STON2, EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.122616836402067 118 0.0363465033206236 0.984148928301127 5942 0.277148490673333 4 4 0 -6.85778381934203 LTS-024 NA NA NA NA LTS-024 chr14 93762359 93762419 61 * BTBD7 NA 0 NA 1.292 1 NA NA NA NA NA LTS-024 chr14 93762420 106494285 12731866 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, LINC00638, NA NA NA NA NA NA NA NA NA LTS-024 EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, SERPINA9, HSP90AA1, COX8C, IFI27, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CDCA4, ATG2B, PPP2R5C, MEG3, BTBD7, ZNF839, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2) 0.117476144521454 257 0.04405286014401 1.03861263448718 12805 0.3856473824269 4 4 0 -6.76904651288567 LTS-024 NA NA NA NA LTS-024 chr14 106494286 106692143 197858 * character(0) 0.201850410356711 5 0.121644153168165 0.627093837202573 71 0.66571086708218 2 2 0 -6.73322858650383 LTS-024 chr14 106692144 106725558 33415 * character(0) 0.316 1 NA 0.569819881065993 7 0.62956356765166 2 2 0 -5.76503733818139 LTS-024 chr14 106725559 106725656 98 * character(0) 0.357 1 NA 0.81349936525635 4 0.815321357911509 3 3 0 -5.7644101620768 LTS-024 chr14 106725657 106733195 7539 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-024 chr14 106733196 106866465 133270 * LINC00226 0.320478483937042 14 0.112330874094014 1.21735648617495 81 0.890567457638633 4 3 1 -6.73930759175527 LTS-024 chr14 106866466 107178965 312500 * LINC00221 0.350526095110435 37 0.124600038802842 1.49045801618601 141 0.613627252710056 6 4 2 -6.74068140869094 LTS-024 chr14 107178966 107179263 298 * character(0) NA 0 NA 1.77966673172119 7 0.114697324251598 8 NA NA -5.76441019539806 LTS-024 chr14 107179264 107198951 19688 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-024 chr14 107198952 107283157 84206 * character(0) NA 0 NA 0.806402463419905 47 0.168760568586721 3 NA NA -5.76565198385779 LTS-024 chr15 20169987 20446043 276057 * character(0) 0.297 1 NA 1.07702526028192 23 0.269708062050762 4 4 0 -5.77135897826392 LTS-024 chr15 20446044 22489921 2043878 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.331941658038751 23 0.0820158569455556 1.08517704657104 256 0.571185454893365 4 3 1 -6.78166107355526 LTS-024 chr15 22489922 22962359 472438 * c(GOLGA8DP, TUBGCP5, CYFIP1, GOLGA6L1, REREP3) 0.494 1 NA 1.00347615898366 249 0.268596857866889 4 4 0 -5.76534883103617 LTS-024 chr15 22962360 28517436 5555077 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-024 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, MIR4508, MIR4715, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.425412812299823 49 0.113321411687901 1.00899533480975 2291 0.366590977328039 4 2 2 -6.74061993821916 LTS-024 NA NA NA NA LTS-024 chr15 28517437 28517492 56 * HERC2 0.333 1 NA 0.951908899111305 5 0.101700540804855 4 4 0 -5.76442498076489 LTS-024 chr15 28517493 31060115 2542623 * c(LOC100288637, LOC100289656, FAM189A1, DKFZP434L187, APBA2, HERC2P9, WHAMMP2, NSMCE3, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, HERC2, CHRFAM7A, ARHGAP11B) 0.288022710961512 12 0.140398431960509 0.997422759334357 782 0.34962578702049 4 3 1 -6.75684642143819 LTS-024 chr15 31060116 31129037 68922 * c(LOC100288637, HERC2P10) 0.46 1 NA 1.15851580318734 7 0.509898822830382 5 5 0 -5.76471300288205 LTS-024 chr15 31129038 32462678 1333641 * c(CHRNA7, OTUD7A, FAN1, LOC283710, MIR211, TRPM1, KLF13, MTMR10) 0.426317083651508 18 0.11617944482004 1.00463252784296 762 0.496301695737021 4 2 2 -6.73776546200943 LTS-024 chr15 32462679 32462786 108 * character(0) NA 0 NA 0.281 1 NA NA NA NA NA LTS-024 chr15 32462787 32908202 445416 * c(WHAMMP1, LOC100996255, GOLGA8O, ARHGAP11A) NA 0 NA 0.591134381466389 40 0.44341794546339 2 NA NA -5.77197222996698 LTS-024 chr15 32908203 33010803 102601 * c(GREM1, SCG5, ARHGAP11A) 0.359698811323949 4 0.0200727842280703 1.31714150458369 179 0.261789065317344 6 4 2 -6.75018140391767 LTS-024 chr15 33010804 33022833 12030 * GREM1 NA 0 NA 1.122 1 NA NA NA NA NA LTS-024 chr15 33022834 34130408 1107575 * c(TMCO5B, GREM1, FMN1, RYR3) 0.429221735404687 50 0.0997807412606792 1.07771772656123 1046 0.822439025007879 4 2 2 -6.7387786447861 LTS-024 chr15 34130409 41099418 6969010 * c(SRP14-AS1, ANKRD63, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHST14, CHRM5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, FSIP1, BAHD1, GOLGA8A, LPCAT4, NUTM1, GCHFR, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, MEIS2, GOLGA8B, EIF2AK4, EMC4, PLCB2, ZNF770, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, RAD51, RYR3, C15orf62, C15orf56, PHGR1, SRP14, ACTC1, NA NA NA NA NA NA NA NA NA LTS-024 BUB1B, THBS1, ANP32AP1, KATNBL1, C15orf41, ZFYVE19, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR, SLC12A6) 0.459900617243443 120 0.0418749505622853 0.952801278060492 5106 0.22997320938808 4 2 2 -7.26214374985011 LTS-024 NA NA NA NA LTS-024 chr15 41099419 41099463 45 * c(DNAJC17, ZFYVE19) NA 0 NA 1.246 1 NA NA NA NA NA LTS-024 chr15 41099464 41166465 67002 * c(RHOV, PPP1R14D, DNAJC17, SPINT1, ZFYVE19) 0.378835127019056 7 0.0538321907589201 1.31488537636865 258 0.304072970467792 6 4 2 -6.78797459749736 LTS-024 chr15 41166466 41186600 20135 * RHOV NA 0 NA 0.748 1 NA NA NA NA NA LTS-024 chr15 41186601 41864803 678203 * c(CHP1, OIP5, EXD1, RTF1, RPAP1, ITPKA, LTK, NDUFAF1, NUSAP1, DLL4, INO80, VPS18, OIP5-AS1, TYRO3, CHAC1) 0.442227285953462 20 0.111424874384398 0.953576796529035 1305 0.217853105428275 4 2 2 -6.77260732265026 LTS-024 chr15 41864804 41865132 329 * TYRO3 NA 0 NA 1.173 1 NA NA NA NA NA LTS-024 chr15 41865133 41871537 6405 * TYRO3 0.46 1 NA 1.45780404518437 48 0.378221523492957 6 6 0 -5.76445214813501 LTS-024 chr15 41871538 41961082 89545 * MGA NA 0 NA 1.023 1 NA NA NA NA NA LTS-024 chr15 41961083 42452250 491168 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, MIR626, JMJD7-PLA2G4B) 0.421507547217499 52 0.0943554521872799 1.01896415515706 1522 0.25703707483434 4 2 2 -6.74693832525276 LTS-024 chr15 42452251 43902611 1450361 * c(CKMT1B, TGM7, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, EPB42, VPS39, CCNDBP1, LRRC57, GANC, TMEM87A, TUBGCP4, MAP1A, HAUS2, STARD9, ZNF106, MIR627, TP53BP1, TMEM62, CAPN3, SNAP23, TGM5, PPIP5K1, LCMT2) 0.422865509423021 54 0.10693159742052 0.955539004038782 3250 0.243451194608797 4 2 2 -6.8022166686664 LTS-024 chr15 43902612 43903082 471 * STRC NA 0 NA 1.634 1 NA NA NA NA NA LTS-024 chr15 43903083 44017496 114414 * c(CATSPER2, STRC, CKMT1A) 0.274428048746385 8 0.113987467982857 1.38427492070724 267 0.624998595588521 5 4 1 -6.74204196310985 LTS-024 chr15 44017497 45060014 1042518 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.459132535762886 19 0.0257768199055749 0.924491728823134 1495 0.228192596830699 4 2 2 -7.29695712872759 LTS-024 chr15 45060015 45118056 58042 * TRIM69 0.325 1 NA 1.71503209712533 3 1.62297330025276 8 8 0 -5.76443035934791 LTS-024 chr15 45118057 45366439 248383 * c(TERB2, SORD) 0.246751322599536 17 0.105243100933589 1.15864783154354 179 0.947966560108292 5 4 1 -6.7479242374961 LTS-024 chr15 45366440 45440621 74182 * c(DUOXA2, DUOX2, DUOX1, SORD, DUOXA1) 0.479 1 NA 1.00376847386302 399 0.210630739588483 4 4 0 -5.76464089504744 LTS-024 chr15 45440622 49118328 3677707 * c(MIR147B, NA, DUT, FBN1, CEP152, BLOC1S6, GATM, HMGN2P46, SLC24A5, SHC4, CTXN2, MYEF2, DUOX1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, SLC28A2) 0.454651539498271 70 0.0394403394086664 0.949296531227711 2438 0.243196925434798 4 2 2 -7.04804201988517 LTS-024 chr15 49118329 49126916 8588 * SHC4 NA 0 NA 1.432 1 NA NA NA NA NA LTS-024 chr15 49126917 49417546 290630 * c(EID1, SHC4, COPS2, SECISBP2L) 0.391140596575514 2 0.134350288425444 1.20037129587147 308 0.338092203072876 5 3 2 -6.74927563628721 LTS-024 chr15 49417547 49417595 49 * COPS2 NA 0 NA 0.966 1 NA NA NA NA NA LTS-024 chr15 49417596 51233981 1816386 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FGF7, AP4E1, GABPB1, GALK2, HDC, USP50, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2) 0.46246459305854 35 0.0305520632924942 0.890608625546317 1522 0.195620618707711 4 2 2 -7.6330132092735 LTS-024 chr15 51233982 51240244 6263 * c(DCAF13P3, AP4E1) NA 0 NA 1.185 1 NA NA NA NA NA LTS-024 chr15 51240245 65782697 14542453 * c(LOC100129973, USP3-AS1, BCL2L10, MIR1272, MIR1266, MIR2116, DYX1C1-CCPG1, MIR4713, PDCD7, MYZAP, ADAM10, GNB5, ARPP19, CLPX, LACTB, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, MGC15885, ZNF609, DMXL2, AP4E1, DAPK2, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, TEX9, TNFAIP8L3, C2CD4B, NA NA NA NA NA NA NA NA NA LTS-024 KBTBD13, UBAP1L, LIPC, MIR190A, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, DPP8, PARP16, MNS1, MYO5C, MAPK6, FAM214A, IGDCC4, RAB27A, RORA, RFX7, BNIP2, SNX1, HSP90AB4P, MIR628, TCF12, TPM1, CA12, ICE2, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, APH1B, TLN2, FAM96A, CILP, CGNL1, ALDH1A2, HERC1, CCNB2, CCPG1, GCNT3, LDHAL6B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.44589573530647 212 0.0738252410230245 0.946772533573534 11822 0.248235201531718 4 2 2 -7.42746770099836 LTS-024 NA NA NA NA LTS-024 chr15 65782698 65790186 7489 * DPP8 NA 0 NA 1.279 1 NA NA NA NA NA LTS-024 chr15 65790187 67074148 1283962 * c(MIR4311, MIR4511, DENND4A, SNAPC5, DIS3L, LCTL, SMAD6, HACD3, DPP8, TIPIN, ZWILCH, MAP2K1, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, SCARNA14, VWA9, MEGF11, RAB11A, SLC24A1) 0.348122484488847 25 0.045478273200874 1.29744393277523 1472 0.308054125632871 6 4 2 -6.84208657028841 LTS-024 chr15 67074149 67074210 62 * SMAD6 NA 0 NA 1.112 1 NA NA NA NA NA LTS-024 chr15 67074211 72553081 5478871 * c(NR2E3, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, DRAIC, C15orf61, CT62, GRAMD2, ITGA11, SPESP1, GLCE, EWSAT1, SKOR1, SMAD3, SMAD6, LINC00593, MYO9A, PKM, LRRC49, PAQR5, CLN6, UACA, LARP6, MAP2K5, THAP10, PARP6, RPLP1, IQCH, MIR629, TLE3, NOX5, AAGAB, THSD4, ANP32A-IT1, ANP32A, PIAS1, CALML4, KIF23) 0.454405855221019 50 0.0376738148656413 0.998958948888758 3893 0.982357601971248 4 2 2 -6.87592516303077 LTS-024 chr15 72553082 72553930 849 * PARP6 NA 0 NA 1.341 1 NA NA NA NA NA LTS-024 chr15 72553931 72639081 85151 * c(HEXA, PARP6, CELF6) NA 0 NA 1.27138394186349 151 0.208439396012737 5 NA NA -5.76727004241551 LTS-024 chr15 72639082 72640021 940 * c(HEXA, CELF6) NA 0 NA 1.003 1 NA NA NA NA NA LTS-024 chr15 72640022 80414173 7774152 * c(DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR4313, ST20-MTHFS, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CLK3, HIGD2B, TMEM266, HYKK, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, ETFA, TBC1D2B, ACSBG1, KIAA1024, TMED3, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, FBXO22, NPTN, REC114, ST20-AS1, LOC283731, NA NA NA NA NA NA NA NA NA LTS-024 HEXA, TMEM202, IDH3A, GOLGA6A, IREB2, ISLR, C15orf59, ANKRD34C, ST20, LOXL1, MIR184, MAN2C1, MPI, UBL7-AS1, NEO1, SCAPER, PML, ZFAND6, RPP25, COMMD4, IMP3, DNAJA4, GOLGA6B, PSMA4, C15orf39, FAM219B, ISLR2, PTPN9, BBS4, RASGRF1, CPLX3, RCN2, BCL2A1, PPCDC, CELF6, STRA6, LOC645752, SH2D7, LOC646938, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR630, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, NEIL1, LMAN1L, PEAK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 HEXA-AS1, CCDC33, EDC3, WDR61, CD276, LINC00597, ADPGK, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A, STOML1) 0.433906236433465 115 0.100370208701652 0.984350918561617 7760 0.300474539516504 4 2 2 -6.79483905998806 LTS-024 NA NA NA NA LTS-024 chr15 80414174 80414191 18 * ZFAND6 0 1 NA 2.847 1 NA NA NA NA NA LTS-024 chr15 80414192 81592802 1178611 * c(MIR4514, CFAP161, FAH, MESDC2, LINC00927, IL16, ZFAND6, CEMIP, ABHD17C, MESDC1, MIR549A, ARNT2) 0.304345089172047 9 0.2352604939211 1.03411653880341 991 0.334173472423973 4 3 1 -6.73508786826522 LTS-024 chr15 81592803 81600510 7708 * IL16 0.499 1 NA 1.05159182390754 33 0.119326741395721 4 4 0 -5.76472984857131 LTS-024 chr15 81600511 93750953 12150443 * c(NA, UBE2Q2P2, LINC00930, MIR1276, MIR1179, MIR3175, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR3529, MIR4515, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, AKAP13, C15orf40, AGBL1, WHAMM, FSD2, C15orf32, HAPLN3, MESP2, LINC00052, ACAN, FES, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, ANPEP, LOC338963, IDH2, TMC3, ZNF774, ARPIN, NA NA NA NA NA NA NA NA NA LTS-024 IL16, ISG20, GOLGA6L5P, KIF7, ZNF710, HDDC3, GOLGA2P7, UBE2Q2P1, GDPGP1, ADAMTS7P1, FAM174B, MIR7-2, MIR9-3, MAN2A2, MFGE8, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, NMB, NTRK3, FURIN, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, SCAND2P, ZSCAN2, DET1, FANCI, MESP1, UNC45A, RGMA, WDR93, ADAMTSL3, ALPK3, RLBP1, BLM, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, BNC1, GOLGA6L10, AEN, CRTC3, EFTUD1P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MRPS11, SCARNA15, AGBL1-AS1, ASB9P1, EFL1, STARD5, AP3B2, ST8SIA2, FAM103A1, MEX3B, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, HOMER2, ZNF592, SV2B) 0.445662988606332 248 0.0718982269225664 0.978968418470308 9178 0.242074311628921 4 2 2 -6.93854129229702 LTS-024 NA NA NA NA LTS-024 chr15 93750954 93751064 111 * character(0) NA 0 NA 1.01877296157476 3 0.098726896031426 4 NA NA -5.76441013538478 LTS-024 chr15 93751065 93751210 146 * character(0) NA 0 NA 0.684 1 NA NA NA NA NA LTS-024 chr15 93751211 94884108 1132898 * MCTP2 0.282 1 NA 0.684199061284878 67 0.187134252352255 2 2 0 -5.86222139960321 LTS-024 chr15 94884109 101434380 6550272 * c(MIR1469, MIR4714, SPATA8-AS1, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, SYNM, FAM169B, IGF1R, SPATA41, LINC01197, MEF2A, LOC440311, PRKXP1, LINS1, MCTP2, NR2F2-AS1, TTC23, NR2F2, HSP90B2P, ARRDC4, LINC00923) 0.224965093303236 108 0.0509568872810214 0.710692298922552 2322 0.238990351417007 2 2 0 -7.60290700332689 LTS-024 chr15 101434381 101436112 1732 * ALDH1A3 NA 0 NA 0.509 1 NA NA NA NA NA LTS-024 chr15 101436113 102516492 1080380 * c(FAM138E, LOC100507472, TARSL2, ALDH1A3, CHSY1, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.21824357853144 21 0.0945485765801545 0.654957000983096 1026 0.145963578085473 2 2 0 -6.77877739689657 LTS-024 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.4071862178479 2 0.0883883476483184 6 NA NA -5.76441020408573 LTS-024 chr16 81704 103009 21306 * POLR3K 0.179 1 NA 0.665684376178321 31 0.248844123598413 2 2 0 -5.76481223516623 LTS-024 chr16 103010 1815946 1712937 * c(LOC100134368, MIR3177, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, TSR3, WFIKKN1, CLCN7, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, MAPK8IP3, TPSD1, TPSG1, DECR2, NHLRC4, C16orf91, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, CRAMP1, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, PDIA2, UNKL, LMF1, FAM173A, CAPN15, NA NA NA NA NA NA NA NA NA LTS-024 SSTR5, TPSAB1, MIR662, UBE2I, METRN, SNRNP25, TMEM204, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, HN1L, PIGQ, RAB11FIP3, IFT140, TELO2) 0.193813782901716 208 0.0497827533734808 0.651055641802885 5390 0.243320636854023 2 2 0 -6.7507074703897 LTS-024 NA NA NA NA LTS-024 chr16 1815947 1816007 61 * MAPK8IP3 NA 0 NA 0.804 1 NA NA NA NA NA LTS-024 chr16 1816008 2653223 837216 * c(MIR940, MIR1225, MIR3178, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, HAGH, IGFALS, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, RPL3L, RPS2, MLST8, HS3ST6, LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, SNHG9, CEMP1, C16orf59, NA NA NA NA NA NA NA NA NA LTS-024 FAHD1, TRAF7, CCNF, ZNF598, SPSB3, SYNGR3, SLC9A3R2) 0.21363122319574 40 0.0707298535237221 0.72838842525835 2809 0.179089842754786 2 2 0 -7.02453216398107 LTS-024 NA NA NA NA LTS-024 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.102 1 NA NA NA NA NA LTS-024 chr16 2672647 2728784 56138 * c(ERVK13-1, FLJ42627, LOC652276) 0.154 1 NA 0.191119290724876 46 0.154597756075484 0 0 0 -5.87868358806508 LTS-024 chr16 2728785 2747930 19146 * KCTD5 0.249535229444102 2 0.0311126983722081 0.491146829403296 46 0.333141109792557 5 4 1 -6.92923316898888 LTS-024 chr16 2747931 4253308 1505378 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, ZNF263, TRAP1, PRSS21, FLYWCH2, ADCY9, ZG16B, PRSS30P, PAQR4, CREBBP, ZNF597, BICDL2, DNASE1, NLRC3, CLUAP1, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, OR2C1, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, SRL, PRSS22, MMP25, C16orf90, TCEB2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, SLX4, ZSCAN10, CLDN6, NA NA NA NA NA NA NA NA NA LTS-024 CLDN9, PKMYT1, TIGD7, IL32) 0.197474843859784 50 0.0457836126105561 0.63787719872903 3011 0.444730946026191 2 2 0 -6.73491329659392 LTS-024 NA NA NA NA LTS-024 chr16 4253309 4254512 1204 * SRL NA 0 NA 0.901 1 NA NA NA NA NA LTS-024 chr16 4254513 8851761 4597249 * c(LINC01569, NAGPA-AS1, CORO7-PAM16, VASN, ANKS3, UBALD1, SEPT12, C16orf89, C16orf71, ABAT, EEF2KMT, MGRN1, ZNF500, TMEM114, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, RBFOX1, PPL, ALG1, NMRAL1, SRL, TFAP4, METTL22, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.182198274767903 67 0.0556805232498795 0.717395047689425 2252 0.229671502317059 2 2 0 -7.4552662468073 LTS-024 chr16 8851762 8857923 6162 * ABAT NA 0 NA 0.442 1 NA NA NA NA NA LTS-024 chr16 8857924 15771771 6913848 * c(MIR365A, NPIPA5, MIR548X, MIR3180-4, MIR4718, RMI2, NTAN1, TEKT5, ABAT, EMP2, ERCC4, PDXDC1, CLEC16A, NOMO1, CARHSP1, MPV17L, TMEM186, RSL1D1, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, PARN, TXNDC11, BFAR, PMM2, RRN3, NDE1, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, ATF7IP2, SNN, PLA2G10, SOCS1, C16orf45, SNX29, NPIPA1, NA NA NA NA NA NA NA NA NA LTS-024 LITAF, KIAA0430) 0.229307408615187 95 0.0699843447539398 0.621124811466107 3869 0.166409742021982 2 2 0 -6.92948302775106 LTS-024 NA NA NA NA LTS-024 chr16 15771772 15780996 9225 * NDE1 NA 0 NA 1.025 1 NA NA NA NA NA LTS-024 chr16 15780997 20861057 5080061 * c(MIR3179-2, COQ7, ERI2, ACSM1, FOPNL, ACSM2A, IQCK, GPR139, ITPRIPL2, PDILT, SMG1, ARL6IP1, GP2, NOMO2, PKD1P1, ACSM2B, ABCC6, KNOP1, NOMO3, ABCC1, MYH11, GDE1, GPRC5B, SYT17, NDE1, ACSM5, THUMPD1, C16orf62, RPS15A, ACSM3, XYLT1, ABCC6P1, CLEC19A, UMOD, TMC5, TMC7, LOC81691, CCP110) 0.18880757038353 65 0.0652484895197995 0.65150851656706 3334 0.192523702382303 2 2 0 -6.79248890297641 LTS-024 chr16 20861058 20869384 8327 * ERI2 NA 0 NA 1.068 1 NA NA NA NA NA LTS-024 chr16 20869385 21008855 139471 * c(ERI2, DCUN1D3, DNAH3, LYRM1) NA 0 NA 1.01640217637287 241 0.271041229644787 4 NA NA -5.76441818775915 LTS-024 chr16 21008856 21011602 2747 * DNAH3 NA 0 NA 0.572 1 NA NA NA NA NA LTS-024 chr16 21011603 28608292 7596690 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, SGF29, SLC5A11, CLN3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, SBK1, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, DNAH3, POLR3E, PRKCB, APOBR, NA NA NA NA NA NA NA NA NA LTS-024 UBFD1, TMEM159, USP31, RBBP6, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, DCTN5, COG7, HS3ST4, HS3ST2) 0.208078116399511 76 0.0907520006062406 0.627408116105641 5494 0.174602298899922 2 2 0 -6.77155991014947 LTS-024 NA NA NA NA LTS-024 chr16 28608293 28608341 49 * SULT1A2 0.129 1 NA 0.08 1 NA NA NA NA NA LTS-024 chr16 28608342 28621415 13074 * c(SULT1A2, SULT1A1) 0.280890501159246 12 0.0566608062923302 0.333610406852532 60 0.112032202543642 1 1 0 -6.78947718774798 LTS-024 chr16 28621416 28631284 9869 * SULT1A1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-024 chr16 28631285 31805897 3174613 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, NA NA NA NA NA NA NA NA NA LTS-024 ITGAL, ITGAM, ITGAX, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A1, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.197632081184821 94 0.0630322770319939 0.63126794357032 6638 0.153337154022537 2 2 0 -6.74038182580301 LTS-024 NA NA NA NA LTS-024 chr16 31805898 31927844 121947 * ZNF267 NA 0 NA 0.556077153112216 59 0.104634662632401 2 NA NA -5.88514251979559 LTS-024 chr16 31927845 31987811 59967 * ZNF267 NA 0 NA 0.896 1 NA NA NA NA NA LTS-024 chr16 31987812 32890081 902270 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.49 1 NA 0.810343589543973 33 0.291528488914008 3 3 0 -5.76737659168038 LTS-024 chr16 32890082 33961273 1071192 * c(SLC6A10P, LOC390705, LINC00273) 0.331641855716332 21 0.115643685105422 0.854822869051174 187 0.376576708932337 3 2 1 -6.85177208286733 LTS-024 chr16 33961274 33965558 4285 * LINC00273 0.351121985542717 77 0.0892989633368814 1.19381850211438 102 0.531863923900544 9 6 3 -6.73604615808643 LTS-024 chr16 33965559 33965562 4 * character(0) NA 0 NA 0.786 1 NA NA NA NA NA LTS-024 chr16 33965563 33965652 90 * character(0) 0.338914025914682 4 0.168256500617361 0.609765280403087 12 0.182986565991423 15 10 5 -6.73849319481902 LTS-024 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.630926806316018 115 0.13515789111306 2 NA NA -5.76652938824494 LTS-024 chr16 46508169 46602819 94651 * ANKRD26P1 0.23 1 NA 0.67876803941911 97 0.212829045325971 2 2 0 -5.76947717781353 LTS-024 chr16 46602820 47644813 1041994 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, GPT2, MYLK3) 0.209463682458462 6 0.115013042738639 0.631517003248218 928 0.146687071758623 2 2 0 -6.73918609754985 LTS-024 chr16 47644814 47703327 58514 * PHKB NA 0 NA 1.04665045363862 65 0.225590435771418 4 NA NA -5.76490067577946 LTS-024 chr16 47703328 47722903 19576 * PHKB NA 0 NA 0.496 1 NA NA NA NA NA LTS-024 chr16 47722904 53945472 6222569 * c(LINC00919, LOC100507577, MIR548AE2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, CNEP1R1, TOX3, BRD7, C16orf97, PHKB, HEATR3, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, AKTIP, SIAH1, FTO, CHD9, LONP2, ABCC11, NKD1, CBLN1, ABCC12, N4BP1) 0.200033882792098 24 0.0441228316788748 0.630991718459308 2717 0.151183670827438 2 2 0 -6.74738851146338 LTS-024 chr16 53945473 53967861 22389 * FTO NA 0 NA 1.054 1 NA NA NA NA NA LTS-024 chr16 53967862 54155777 187916 * FTO 0.152103328627572 14 0.047481864669866 1.02264104302559 221 0.303653843520038 3 3 0 -6.78787292932533 LTS-024 chr16 54155778 54273698 117921 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-024 chr16 54273699 54967096 693398 * c(IRX5, CRNDE, IRX3) 0.143 1 NA 0.658275894096675 123 0.15518731893559 2 2 0 -5.78310112654498 LTS-024 chr16 54967097 55690425 723329 * c(IRX5, MMP2, LPCAT2, SLC6A2, IRX6, CAPNS2) 0.207 1 NA 0.688114493593778 381 0.16360446984872 2 2 0 -5.85970398662585 LTS-024 chr16 55690426 55880639 190214 * c(CES1, CES5A, CES1P2, CES1P1, SLC6A2) 0.388549678517312 9 0.0756736413819237 0.667529659074935 192 0.257245304271215 3 2 1 -6.81579162917406 LTS-024 chr16 55880640 55890398 9759 * CES5A 0.131 1 NA 0.727706108972409 13 0.534211232590294 3 3 0 -5.76475229334837 LTS-024 chr16 55890399 56864472 974074 * c(MIR3935, NUDT21, CES5A, DKFZP434H168, AMFR, GNAO1, LOC283856, MT1DP, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, OGFOD1, BBS2, MT1IP, MT4, NUP93) 0.177408863599584 20 0.0350255170141036 0.680172309942375 826 0.216640736258552 2 2 0 -7.02670749257141 LTS-024 chr16 56864473 58741204 1876732 * c(KATNB1, CETP, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, GOT2, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, PLLP, POLR2C, SLC38A7, DOK4, COQ9, CIAPIN1, ZNF319, CCL17, CCL22, CX3CL1, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, USB1, SETD6, FAM192A, NLRC5, DRC7, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.161815070114635 77 0.0534293440460839 0.731678387723756 3407 0.19564828271523 3 3 0 -7.16565251665069 LTS-024 chr16 58741205 70808234 12067030 * c(CDH3, SNORD111B, VAC14-AS1, CDH5, MIR1538, MIR1972-1, LINC00920, SMG1P7, LOC100506083, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NA NA NA NA NA NA NA NA NA LTS-024 NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, APOOP5, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.195866306903482 90 0.0777409186783499 0.653838035066093 8637 0.238365585989925 2 2 0 -6.8208444512397 LTS-024 NA NA NA NA LTS-024 chr16 70808235 70874094 65860 * c(HYDIN, VAC14) NA 0 NA 0.684345676337767 113 0.161840664236482 2 NA NA -5.77217400564359 LTS-024 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.84 1 NA NA NA NA NA LTS-024 chr16 70883627 70884524 898 * HYDIN 0.478 1 NA 0.787574992880399 11 0.105028394429143 3 3 0 -5.76453252366693 LTS-024 chr16 70884525 71167220 282696 * HYDIN 0.413233586608729 80 0.055162497292952 0.83793950486948 530 0.239171202766926 3 2 1 -6.91339009454118 LTS-024 chr16 71167221 71167262 42 * HYDIN NA 0 NA 0.923 1 NA NA NA NA NA LTS-024 chr16 71167263 71171065 3803 * HYDIN NA 0 NA 0.632 1 NA NA NA NA NA LTS-024 chr16 71171066 71406024 234959 * c(HYDIN, CMTR2, CALB2) 0.215 1 NA 0.66328111932393 129 0.157644659480715 2 2 0 -5.77370905532703 LTS-024 chr16 71406025 89784415 18378391 * c(VPS9D1-AS1, LOC100129617, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, DPEP1, SNAI3-AS1, LINC00311, NA NA NA NA NA NA NA NA NA LTS-024 LDHD, MLKL, ZNF778, ACSF3, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, ZNF19, ZNF23, CA5A, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, KCNG4, SDR42E1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.187204485297325 331 0.0545726709694086 0.650743085169133 11835 0.322284112171701 2 2 0 -6.81439445300056 LTS-024 NA NA NA NA LTS-024 chr16 89784416 90161242 376827 * c(VPS9D1-AS1, URAHP, TUBB3, PRDM7, AFG3L1P, FANCA, TCF25, GAS8, MC1R, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CENPBD1, ZNF276, VPS9D1) NA 0 NA 0.625275417275354 1019 0.124558089489375 2 NA NA -5.769386834876 LTS-024 chr17 6004 6115 112 * DOC2B 0.084 1 NA 1.2109717970443 3 0.17592327873252 5 5 0 -5.76441013554647 LTS-024 chr17 6116 2318550 2312435 * c(DBIL5P, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, FAM57A, RILP, DOC2B, MIR22HG, SCARF1, RPH3AL, SGSM2) 0.12284926140111 75 0.0558035389106726 1.01793900049206 3119 0.251992019457207 4 4 0 -6.73397884402929 LTS-024 chr17 2318551 2575981 257431 * c(LOC284009, PAFAH1B1, METTL16) NA 0 NA 1.01884078705458 91 0.294961992957359 4 NA NA -5.7644102569939 LTS-024 chr17 2575982 2577313 1332 * PAFAH1B1 NA 0 NA 1.686 1 NA NA NA NA NA LTS-024 chr17 2577314 2597734 20421 * c(CLUH, PAFAH1B1) 0.331 1 NA 1.42708157537202 57 0.279877851086545 6 6 0 -5.76446222779223 LTS-024 chr17 2597735 2808678 210944 * c(MIR1253, RAP1GAP2, CLUH) 0.118 1 NA 1.54100397731577 102 0.377365508935963 7 7 0 -5.76536505374876 LTS-024 chr17 2808679 2860908 52230 * RAP1GAP2 NA 0 NA 0.856 1 NA NA NA NA NA LTS-024 chr17 2860909 2966308 105400 * c(RAP1GAP2, OR1D5) 0.303185603571942 8 0.161321717163473 1.14745104375146 119 0.657592247538107 4 3 1 -6.73704764657568 LTS-024 chr17 2966309 3101076 134768 * c(OR1A2, OR1D2, OR1D5, OR1G1) 0.125 1 NA 1.16886576366346 61 1.39696761074281 5 5 0 -5.76446015292229 LTS-024 chr17 3101077 4574776 1473700 * c(P2RX5-TAX1BP3, MYBBP1A, CYB5D2, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ZZEF1, SHPK, ALOX15, OR1A2, PELP1, TAX1BP3, SMTNL2, ITGAE, OR3A4P, ASPA, ATP2A3, OR3A1, OR3A2, P2RX1, P2RX5, ANKFY1, NCBP3, OR1D4, UBE2G1, TRPV1, EMC6, OR1A1, OR1E1, OR1E2, GSG2, OR3A3, CAMKK1, SPATA22) 0.126876443841578 108 0.0530244976593359 1.01550125342072 2549 0.300306362412531 4 4 0 -6.73387655670947 LTS-024 chr17 4574777 4852292 277516 * c(C17orf107, LOC101559451, CHRNE, RNF167, PELP1, GP1BA, VMO1, GLTPD2, MED11, ARRB2, MINK1, PFN1, PLD2, PSMB6, CXCL16, SLC25A11, ZMYND15, TM4SF5) 0.0648449985177605 14 0.0361390020964535 1.41879959277062 1009 0.339742340255498 8 8 0 -6.82764175338472 LTS-024 chr17 4852293 4855014 2722 * c(ENO3, PFN1) NA 0 NA 1.071 1 NA NA NA NA NA LTS-024 chr17 4855015 7318935 2463921 * c(LOC100130950, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, MIR4520-1, MIR4520-2, ALOX15P1, CLEC10A, KIF1C, GABARAP, ZFP3, CLDN7, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EIF5A, SLC16A13, ENO3, NLRP1, CAMTA2, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12P2, TMEM256, BCL6B, SLC13A5, GPS2, LOC339166, TMEM95, ACADVL, INCA1, SCIMP, ASGR1, ASGR2, MIR324, NUP88, MED31, DERL2, YBX2, FAM64A, XAF1, SLC52A1, NA NA NA NA NA NA NA NA NA LTS-024 DHX33, PLSCR3, MIR497, NLGN2, SLC2A4, C1QBP, LOC728392, ZNF232, MIS12, PHF23, PITPNM3, TEKT1, RPAIN, NEURL4, ZNF594, TXNDC17, TNK1, USP6, RABEP1, SPAG7, ACAP1, KIAA0753) 0.111275688733881 79 0.0355245982225063 1.02295314772378 4046 0.256767595413657 4 4 0 -6.82203234987902 LTS-024 NA NA NA NA LTS-024 chr17 7318936 7320937 2002 * NLGN2 NA 0 NA 1.20635842935951 29 0.267253901343369 5 NA NA -5.76441030378069 LTS-024 chr17 7320938 7321158 221 * NLGN2 NA 0 NA 0.739 1 NA NA NA NA NA LTS-024 chr17 7321159 7321858 700 * NLGN2 0.204 1 NA 0.654265639568838 15 0.123119686252269 2 2 0 -5.764430056787 LTS-024 chr17 7321859 21117589 13795731 * c(MIR744, LOC100128288, FAM106CP, LOC100287072, LINC00675, MIR1288, MIR1180, MIR4314, NA, MAGOH2P, TVP23C-CDRT4, SENP3-EIF4A1, MIR4731, MIR4521, EPN2-AS1, COX10-AS1, EPN2-IT1, TMEM220-AS1, PEMT, FBXW10, TRIM16, RAI1, GRAP, CHD3, AKAP10, SAT2, CHRNB1, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, DNAH2, SLC47A2, CDRT15, CFAP52, CCDC42, PIK3R6, NA NA NA NA NA NA NA NA NA LTS-024 ODF4, TRIM16L, MFSD6L, USP32P1, DNAH9, DRG2, EFNB3, DHRS7C, TVP23C, CENPV, FLCN, PLD6, C17orf74, ALDH3A1, USP32P2, ALDH3A2, FGF11, ARHGEF15, EPN2, FOXO3B, KDM6B, FLII, MPRIP, USP22, TNFRSF13B, PIK3R5, ALOX12B, ALOX15B, TBC1D28, CDRT15L2, DHRS7B, SENP3, SNORA67, SNORD49A, B9D1, LOC284023, LINC00324, LINC00670, CDRT4, CCDC144B, TMEM102, LGALS9B, RANGRF, GUCY2D, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, CDRT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SPEM1, SPDYE4, TMEM220, SHISA6, LRRC75A, SLC25A35, LLGL1, KRT16P2, GRAPL, TNFSF12-TNFSF13, MEIS3P1, MFAP4, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, TVP23B, MYO15A, TRPV2, RASD1, PER1, PFAS, PMP22, POLR2A, BORCS6, ALKBH5, TTC19, MED9, WRAP53, SLC47A1, MAPK7, PRPSAP2, NT5M, ADPRM, ZNF286A, ZNF287, ZNF624, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, SLC35G6, RNF222, PIRT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CDRT15P2, FAM83G, KRT16P3, EVPLL, TEKT3, SHBG, SHMT1, SNORA48, SNORD10, LGALS9C, SOX15, SREBF1, SCARNA21, SNORA59A, VAMP2, SNORD49B, SNORD65, MIR33B, TOP3A, TP53, KRT16P1, ZNF286B, UBB, ZNF18, RNF112, GID4, FAM106A, CTC1, NDEL1, DRC3, TMEM107, NAA38, HES7, MGC12916, GAS7, COPS3, MYH13, TNFSF13, TNFSF12, TMEM11, ATPAF2, KCNAB3, AURKB, TMEM88, SPECC1, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 FXR2, MPDU1, NCOR1, CD68, ULK2, CCDC144A, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.210844304663337 264 0.0730211169495981 0.649818733266675 15059 0.331971232146126 2 2 0 -6.77608707275003 LTS-024 NA NA NA NA LTS-024 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.41 1 NA 0.534079939846021 31 0.107453485810853 2 2 0 -5.88632098005916 LTS-024 chr17 21194770 21318629 123860 * c(KCNJ12, MAP2K3) 0.42451297153765 66 0.0564024913070427 0.709870409230706 159 0.171890775144366 2 1 1 -6.786755712832 LTS-024 chr17 21318630 21318663 34 * KCNJ12 0.305 1 NA 0.720208760894746 3 0.0581062245661627 2 2 0 -5.76449865533979 LTS-024 chr17 21318664 21318843 180 * KCNJ12 0.308779318794125 4 0.0143061758225833 0.732714641234507 8 0.0750988634116009 4 3 1 -6.7734971908853 LTS-024 chr17 21318844 21318867 24 * KCNJ12 0.29 1 NA 1.273 1 NA NA NA NA NA LTS-024 chr17 21318868 21319913 1046 * KCNJ12 0.279541105004039 36 0.0733669782127047 1.11223068818036 56 0.401930418155881 12 9 3 -6.7379838649384 LTS-024 chr17 21319914 22066835 746922 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.333302891558551 20 0.0691014509711322 0.665151064106751 226 0.212844150424001 3 2 1 -7.46403672831966 LTS-024 chr17 22066836 22066856 21 * character(0) NA 0 NA 0.848 1 NA NA NA NA NA LTS-024 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.166 1 NA 0.71229774435707 17 0.103776803766545 2 2 0 -5.77105495991473 LTS-024 chr17 25630389 28001104 2370716 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-024 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.185821812381007 62 0.0614461538705976 0.655233649969593 4224 0.156785902887611 2 2 0 -6.81098535494571 LTS-024 NA NA NA NA LTS-024 chr17 28001105 29541653 1540549 * c(MIR3184, MIR4733, CPD, LRRC37BP1, TBC1D29, EFCAB5, TMIGD1, SUZ12P1, NF1, MIR423, DPRXP4, CRLF3, ADAP2, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, SSH2, GOSR1) 0.244416363152367 8 0.0533023719654469 0.608174106726838 1389 0.141673373606799 2 2 0 -7.21939097073217 LTS-024 chr17 29541654 29545985 4332 * NF1 NA 0 NA 1.196 1 NA NA NA NA NA LTS-024 chr17 29545986 29632704 86719 * c(EVI2B, NF1, OMG) NA 0 NA 1.01619176715821 161 0.275306093341676 4 NA NA -5.76441577310506 LTS-024 chr17 29632705 29634863 2159 * c(EVI2B, NF1) NA 0 NA 0.523 1 NA NA NA NA NA LTS-024 chr17 29634864 34433730 4798867 * c(MIR365B, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MIR193A, MYO1D, NF1, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, NA NA NA NA NA NA NA NA NA LTS-024 CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, SH3GL1P1, SNORD7, MIR632, ZNF207, MMP28, TAF15, RAB11FIP4, CDK5R1, ZNF830, SLFN11, RASL10B) 0.186312799725057 56 0.0563581975277016 0.626628860217205 4383 0.190081187305603 2 2 0 -6.789548260719 LTS-024 NA NA NA NA LTS-024 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.162 1 NA NA NA NA NA LTS-024 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.113902016719482 41 0.0614827161911696 0 NA NA -10.2859779155632 LTS-024 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.655 1 NA NA NA NA NA LTS-024 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.189605795160876 20 0.0988162036574122 0.614592076801844 1537 0.217601012058365 2 2 0 -6.76212043627103 LTS-024 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.303 1 NA NA NA NA NA LTS-024 chr17 36351756 36398345 46590 * LOC440434 0.257490576083073 3 0.172572689998543 0.315553901262448 66 0.29772973970045 1 1 0 -6.78647476698199 LTS-024 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.624 1 NA NA NA NA NA LTS-024 chr17 36421727 39019013 2597287 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, NA NA NA NA NA NA NA NA NA LTS-024 PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, TNS4, FBXL20, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.193578119445517 42 0.0579937769499841 0.635025491433277 5422 0.152858870131785 2 2 0 -6.74106133974754 LTS-024 NA NA NA NA LTS-024 chr17 39019014 39019308 295 * KRT12 NA 0 NA 0.906 1 NA NA NA NA NA LTS-024 chr17 39019309 39346984 327676 * c(KRTAP4-9, KRTAP4-7, KRT40, KRT23, KRT12, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.167019568709714 34 0.0518041096381462 0.749729706112785 693 0.264495157586595 3 3 0 -6.79898197320775 LTS-024 chr17 39346985 39383396 36412 * KRTAP9-2 NA 0 NA 1.372 1 NA NA NA NA NA LTS-024 chr17 39383397 39432560 49164 * c(KRTAP9-7, KRTAP9-6, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.0933701969495977 11 0.0673430836024822 1.11413990812388 74 0.64060877206941 6 6 0 -6.73758434124405 LTS-024 chr17 39432561 39432670 110 * character(0) NA 0 NA 0.719 1 NA NA NA NA NA LTS-024 chr17 39432671 44159945 4727275 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, KRTAP16-1, LOC100505782, GJC1, KRTAP29-1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KAT2A, NA NA NA NA NA NA NA NA NA LTS-024 GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, KRT42P, PTRF, NKIRAS2, COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, CCDC103, KRT33B, KRT34, KRT35, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, FKBP10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.182118658343823 139 0.0597652464527463 0.712508890984634 8908 0.186257974168853 2 2 0 -7.67017090641892 LTS-024 NA NA NA NA LTS-024 chr17 44159946 44172017 12072 * character(0) NA 0 NA 0.508 1 NA NA NA NA NA LTS-024 chr17 44172018 44414867 242850 * character(0) 0.317 1 NA 0.403901838440193 82 0.193346156086621 1 1 0 -5.80224373593187 LTS-024 chr17 44414868 44430167 15300 * character(0) NA 0 NA 0.787 1 NA NA NA NA NA LTS-024 chr17 44430168 48154817 3724650 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, NA NA NA NA NA NA NA NA NA LTS-024 PHB, PNPO, UBE2Z, MRPL45P2, SP2, FLJ45513, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.187111120482012 99 0.0564580959164989 0.687966965305559 4350 0.183779561358793 2 2 0 -7.13354355196485 LTS-024 NA NA NA NA LTS-024 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.046 1 NA NA NA NA NA LTS-024 chr17 48155444 55339683 7184240 * c(TOM1L1, MIR3614, C17orf112, TOB1, CHAD, MSI2, WFIKKN2, COL1A1, COX11, EME1, ANKFN1, TMEM92, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, NME1, NME2, UTP18, MRPL27, PDK2, LUC7L3, MBTD1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, CA10, PCTP, SCPEP1, XYLT2, SGCA, SPATA20, NME1-NME2, TRIM25, ACSF2, COIL, AKAP1, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, NA NA NA NA NA NA NA NA NA LTS-024 SPAG9, ANKRD40, NOG) 0.179695079461555 69 0.0502443644967559 0.721500511096206 4074 0.195006249610832 2 2 0 -8.21551985487866 LTS-024 NA NA NA NA LTS-024 chr17 55339684 55363229 23546 * MSI2 NA 0 NA 1.033 1 NA NA NA NA NA LTS-024 chr17 55363230 56386222 1022993 * c(OR4D2, MSI2, DYNLL2, OR4D1, LPO, CUEDC1, MPO, MRPS23, MKS1, MSX2P1, SRSF1, VEZF1, EPX, TSPOAP1) 0.116210552285236 12 0.0342795990217346 1.05434981501883 638 0.261389679536964 4 4 0 -6.78289369158956 LTS-024 chr17 56386223 61623052 5236830 * c(TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, APPBP2, TLK2, CLTC, HSF5, C17orf64, EFCAB3, CYB561, MARCH10, ACE, PPM1E, TANC2, C17orf47, GDPD1, METTL2A, NACA2, SKA2, YPEL2, C17orf82, MIR142, MIR21, MIR301A, TBC1D3P2, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, BCAS3, RNF43, SMG8, PRR11, TEX14, INTS2, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, SUPT4H1, TBX2, CA4, MIR454, DHX40, KCNH6, NA NA NA NA NA NA NA NA NA LTS-024 VMP1, BRIP1, USP32, PPM1D, MTMR4, TSPOAP1, TBX4, MRC2, MED13) 0.177318230842386 43 0.0645509748179269 0.688968133120626 4107 0.20616305136351 2 2 0 -7.2306890283757 LTS-024 NA NA NA NA LTS-024 chr17 61623053 61842287 219235 * c(DCAF7, MAP3K3, TACO1, CCDC47, LOC729683, LIMD2, KCNH6, STRADA) 0 1 NA 0.717232417524396 284 0.196264842290501 2 2 0 -5.81215901678888 LTS-024 chr17 61842288 63526279 1683992 * c(MIR3064, MIR5047, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, DDX5, AMZ2P1, ERN1, GH1, GH2, MILR1, ICAM2, LRRC37A3, PLEKHM1P1, PECAM1, TEX2, CCDC47, PSMC5, SCN4A, SMURF2, SMARCD2, SNORA50C, SNORD104, AXIN2, RGS9, CEP95, PRR29, CD79B) 0.191991111821099 4 0.0324486774255387 0.699899010546572 1628 0.147910422330843 2 2 0 -7.15424049318356 LTS-024 chr17 63526280 63530023 3744 * AXIN2 NA 0 NA 1.081 1 NA NA NA NA NA LTS-024 chr17 63530024 67513084 3983061 * c(SNORA38B, LINC00674, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, CEP112, BPTF, ARSG, ABCA6, ABCA5, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PRKCA, MAP2K6, PSMD12, MIR634, MIR635, CACNG1, AXIN2, SLC16A6, HELZ) 0.131360151359337 37 0.0305695436177414 0.943258199176287 2533 0.236099501681443 4 4 0 -7.00469474759516 LTS-024 chr17 67513085 67513595 511 * MAP2K6 NA 0 NA 0.993 1 NA NA NA NA NA LTS-024 chr17 67513596 73402334 5888739 * c(CD300LD, LOC100287042, LINC00673, MIR3678, MIR3615, ATP5H, CD300C, CD300A, USH1G, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, FDXR, GGA3, KCTD2, CDC42EP4, NAT9, LINC00469, FADS6, HID1, GRB2, GRIN2C, NT5C, CDR2L, RAB37, MRPL58, CD300E, OTOP3, GPR142, KCNJ2, KCNJ16, BTBD17, KCNJ2-AS1, LINC00511, LOC400620, MRPS7, HN1, SDK2, TMEM104, C17orf80, GPRC5C, MAP2K6, MIF4GD, SLC25A19, RPL38, CPSF4L, DNAI2, SUMO2, NA NA NA NA NA NA NA NA NA LTS-024 SOX9, SSTR2, ARMC7, NUP85, FAM104A, MGC16275, SLC16A5, OTOP2, SLC9A3R1, COG1, TTYH2) 0.136980431022436 85 0.0621403376932203 1.02604612660337 3317 0.276119469600671 4 4 0 -6.75725297450708 LTS-024 NA NA NA NA LTS-024 chr17 73402335 73467952 65618 * TMEM94 NA 0 NA 1.713 1 NA NA NA NA NA LTS-024 chr17 73467953 73759508 291556 * c(SMIM6, GALK1, TSEN54, SAP30BP, ITGB4, LLGL2, CASKIN2, SMIM5, MYO15B, RECQL5, TMEM94) 0.0620468589450622 30 0.0165069125192914 1.81786377693032 1175 0.419695974754927 9 9 0 -6.75361755434023 LTS-024 chr17 73759509 73759913 405 * GALK1 NA 0 NA 1.31 1 NA NA NA NA NA LTS-024 chr17 73759914 76267793 2507880 * c(TNRC6C-AS1, C17orf99, MIR4316, RNF157-AS1, SNHG16, LOC100507351, MIR4738, LOC100996291, CDK3, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, METTL23, AFMID, MGAT5B, TMC8, AANAT, TRIM65, UNC13D, EVPL, FOXJ1, JMJD6, EXOC7, WBP2, GALK1, UBALD2, TMEM235, H3F3B, BIRC5, ZACN, FLJ45079, MXRA7, ACOX1, ST6GALNAC1, PRPSAP1, TNRC6C, UBE2O, SEC14L1, SRSF2, MRPL38, SNHG20, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, NA NA NA NA NA NA NA NA NA LTS-024 TK1, PRCD, MFSD11, RHBDF2, QRICH2, FBF1, UNK, GALR2, SPHK1, TRIM47, SYNGR2) 0.120885715105018 87 0.043607615902063 0.997488338400856 3661 0.28256347769275 4 4 0 -6.74710980388038 LTS-024 NA NA NA NA LTS-024 chr17 76267794 76506666 238873 * c(LOC100996291, DNAH17-AS1, DNAH17, SOCS3, PGS1) 0.0841974886505333 17 0.026488482513771 1.35054443992591 404 0.396635876187153 7 7 0 -6.77240924339949 LTS-024 chr17 76506667 76510895 4229 * DNAH17 NA 0 NA 1.013 1 NA NA NA NA NA LTS-024 chr17 76510896 78041408 1530513 * c(C1QTNF1-AS1, MIR4739, CEP295NL, C1QTNF1, CANT1, TBC1D16, RBFOX3, ENPP7, LGALS3BP, CCDC40, CBX8, USP36, ENGASE, TIMP2, CBX2, CBX4, DNAH17, CYTH1) 0.111594942533988 34 0.0412926601100744 1.02113675234137 1196 0.276852865971682 4 4 0 -6.79597617421601 LTS-024 chr17 78041409 78041414 6 * CCDC40 NA 0 NA 1.444 1 NA NA NA NA NA LTS-024 chr17 78041415 78450226 408812 * c(LOC100294362, MIR4730, GAA, SLC26A11, ENDOV, NPTX1, CCDC40, RNF213, SGSH, CARD14, EIF4A3) 0.0849720736437369 21 0.0205507501890645 1.45154213906207 1188 0.391789650010228 7 7 0 -6.78110012686363 LTS-024 chr17 78450227 78519466 69240 * c(NPTX1, RPTOR) NA 0 NA 0.778 1 NA NA NA NA NA LTS-024 chr17 78519467 80121311 1601845 * c(LOC100130370, MIR1250, MIR3065, MIR3186, MIR4740, ALYREF, BAIAP2, PPP1R27, SLC38A10, TEPSIN, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, MYADML2, NPB, FSCN2, GCGR, CCDC57, NDUFAF8, LINC00482, TMEM105, GPS1, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, ARHGDIA, MAFG, BAIAP2-AS1, MIR338, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, RPTOR, BAHCC1, PYCR1, PCYT2, RAC3, RFNG, MRPL12, DUS1L, ACTG1, MIR657, NA NA NA NA NA NA NA NA NA LTS-024 ASPSCR1, CHMP6, FAAP100, TSPAN10, HGS, MAFG-AS1, AATK) 0.105420615791726 83 0.031036738962756 1.16302245580946 3167 0.288582452855458 5 5 0 -6.75122431452924 LTS-024 NA NA NA NA LTS-024 chr17 80121312 80129591 8280 * CCDC57 NA 0 NA 0.89 1 NA NA NA NA NA LTS-024 chr17 80129592 80363378 233787 * c(CSNK1D, UTS2R, CCDC57, TEX19, SECTM1, OGFOD3, SLC16A3, CD7) 0.114428959477554 9 0.0361367003351317 0.997036249717037 305 0.272398340426528 4 4 0 -6.78517992343461 LTS-024 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.929 1 NA NA NA NA NA LTS-024 chr17 80363386 80391534 28149 * c(HEXDC, OGFOD3) 0.101966275113006 2 0.0113137084989848 2.02246061682454 39 0.783377693922946 15 14 1 -6.73826233438515 LTS-024 chr17 80391535 80391609 75 * HEXDC NA 0 NA 0.861 1 NA NA NA NA NA LTS-024 chr17 80391610 81043039 651430 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.129268407840455 25 0.0351766020720213 0.983849005336096 869 0.253373785800818 4 4 0 -6.7492462157595 LTS-024 chr17 81043040 81083625 40586 * METRNL NA 0 NA 1.08318682708548 23 0.227420845805127 4 NA NA -5.76616037061481 LTS-024 chr18 116845 121139 4295 * ROCK1P1 0.475 1 NA 0.870592376551077 25 0.202980311032047 3 3 0 -5.76456727532303 LTS-024 chr18 121140 3215253 3094114 * c(NDC80, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.442075165953664 53 0.0935939489813397 0.946421802233886 1540 0.295739224430116 4 2 2 -6.8496723070126 LTS-024 chr18 3215254 3708453 493200 * c(MYL12B, MYL12A, DLGAP1-AS1, TGIF1, MYOM1, DLGAP1) 0.393922938798847 4 0.0694328212495119 1.29379330917423 338 0.289273348017761 5 3 2 -6.79470513587129 LTS-024 chr18 3708454 11853276 8144823 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, RALBP1, RAB31, APCDD1, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, GNAL, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, NDUFV2, TWSG1, CHMP1B, PTPRM, PIEZO2, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, TXNDC2, NAPG, L3MBTL4, VAPA, DLGAP1, PPP4R1) 0.435208668705605 94 0.0770092591152265 1.08286128217719 2959 0.327105874547569 4 2 2 -6.8966958228922 LTS-024 chr18 11853277 13760954 1907678 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, RNMT) 0.434768678881393 35 0.113676823354927 1.00702968939589 1461 0.918573189485979 4 2 2 -6.73328094370616 LTS-024 chr18 13760955 13764016 3062 * RNMT 0.484 1 NA 1.01665582591618 59 0.211457552047551 4 4 0 -5.7644103730895 LTS-024 chr18 13764017 14866503 1102487 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.302604659176894 9 0.139487554203871 0.998069963834914 265 0.442045962305014 4 3 1 -6.73746575718356 LTS-024 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.18220787873236 33 0.397572987391033 5 NA NA -5.76470032702148 LTS-024 chr18 18529727 18529837 111 * ROCK1 0.461 1 NA 0.963773496430374 3 0.230413396601268 4 4 0 -5.76441400915924 LTS-024 chr18 18529838 21481233 2951396 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ANKRD29, ABHD3, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.444950509426527 27 0.0925236552489512 0.990924617717423 1925 0.242304499865955 4 2 2 -6.76240709725904 LTS-024 chr18 21481234 21534900 53667 * LAMA3 0 1 NA 0.985435366825518 139 0.328471631435197 4 4 0 -5.76474703573736 LTS-024 chr18 21534901 29039099 7504199 * c(CDH2, MIR302F, MIR320C2, OSBPL1A, TTC39C, PSMA8, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG3, ZNF521, CABYR, KCTD1, AQP4, LAMA3, IMPACT, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.368488226379808 36 0.195016114515275 1.03340401014952 1856 0.363049906696049 4 3 1 -6.78885900200681 LTS-024 chr18 29039100 29056465 17366 * DSG3 0.434 1 NA 1.04878397152238 75 0.258043514034232 4 4 0 -5.76453904753168 LTS-024 chr18 29056466 30254782 1198317 * c(DSG2-AS1, SLC25A52, DSG2, DSG3, TRAPPC8, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, B4GALT6) 0.467064130548906 8 0.0275470376939933 0.969985678079706 941 0.235728134107021 4 2 2 -7.44855853805227 LTS-024 chr18 30254783 30518068 263286 * c(CCDC178, KLHL14) 0.349697277181423 3 0.0688791211713196 1.3558660390771 114 0.353450295948747 6 4 2 -6.75582697031117 LTS-024 chr18 30518069 30538012 19944 * CCDC178 NA 0 NA 0.729 1 NA NA NA NA NA LTS-024 chr18 30538013 51686301 21148289 * c(ZSCAN30, SNORD58C, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, ZNF271P, MAPRE2, HAUS1, LOXHD1, INO80C, C18orf25, TCEB3C, DCC, DTNA, ZBTB7C, SKA1, CFAP53, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, CCDC178, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, RNF165, C18orf32, NA NA NA NA NA NA NA NA NA LTS-024 ATP5A1, IER3IP1, TCEB3B, MEX3C, PIK3C3, DYM, MOCOS, RPRD1A, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, EPG5, RIT2, RPL17, KC6, MIR924HG, SKOR2, SLC14A1, SCARNA17, SYT4, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, NOL4, MBD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.431772095755742 101 0.121273453381395 1.03886960887746 6751 0.425435501006663 4 2 2 -6.75946875025325 LTS-024 NA NA NA NA LTS-024 chr18 51686302 51690879 4578 * MBD2 NA 0 NA 0.72 1 NA NA NA NA NA LTS-024 chr18 51690880 61570529 9879650 * c(LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, DYNAP, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, SERPINB2, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, SNORA37, TCF4, CCDC68, SERPINB7, TNFRSF11A, MBD2, SERPINB12, NA NA NA NA NA NA NA NA NA LTS-024 SERPINB11, SEC11C, TXNL1, ONECUT2, VPS4B) 0.433630812630059 122 0.0691796335952721 0.941150514487059 4839 0.543558094115276 4 2 2 -6.85811311461539 LTS-024 NA NA NA NA LTS-024 chr18 61570530 61570904 375 * SERPINB2 0 1 NA 1.16201939315014 5 2.31076714534373 5 5 0 -5.76441020398881 LTS-024 chr18 61570905 71987715 10416811 * c(CDH7, LINC01541, LOC100505817, MIR5011, CD226, CBLN2, CYB5A, FBXO15, DOK6, LINC00305, RTTN, HMSD, LOC284294, CDH19, TIMM21, LINC01538, LOC400655, SERPINB2, SERPINB8, SERPINB10, TMX3, LOC643542, C18orf63, CCDC102B, NETO1, DSEL, SOCS6) 0.367594576530576 42 0.157489945847261 0.938486963301435 1679 0.387583259906504 4 3 1 -7.07587243343399 LTS-024 chr18 71987716 72009435 21720 * C18orf63 0.444 1 NA 0.922164623961973 29 0.195850941108295 4 4 0 -5.76780281208796 LTS-024 chr18 72009436 74580861 2571426 * c(LOC100131655, TSHZ1, FAM69C, ZADH2, SMIM21, LINC00908, LOC339298, LINC00909, C18orf65, ZNF407, CNDP2, C18orf63, ZNF236, CNDP1, ZNF516) 0.456957386934434 19 0.0293009190922251 0.92806844171297 944 0.291715612011733 4 2 2 -7.18290151246231 LTS-024 chr18 74580862 74583609 2748 * ZNF236 NA 0 NA 1.118 1 NA NA NA NA NA LTS-024 chr18 74583610 74963045 379436 * c(GALR1, MBP, ZNF236) 0.367980497965048 13 0.058718799680319 1.18172779497482 395 0.213687578244945 6 4 2 -6.87920046778508 LTS-024 chr18 74963046 77807369 2844324 * c(RBFADN, TXNL4A, GALR1, KCNG2, SALL3, ATP9B, HSBP1L1, NFATC1, RBFA, PQLC1, CTDP1) 0.466550431590969 8 0.0316946931114433 0.886623416742868 674 0.196272730712892 4 2 2 -8.00324261451316 LTS-024 chr18 77807370 78005362 197993 * c(PARD6G-AS1, RBFADN, ADNP2, RBFA, PARD6G) NA 0 NA 0.902731428856989 275 0.194826701412507 3 NA NA -5.78767256917006 LTS-024 chr19 107416 334454 227039 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.207 1 NA 0.644494268658405 95 0.146535570631319 2 2 0 -5.76529129039098 LTS-024 chr19 334455 1952944 1618490 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, NA NA NA NA NA NA NA NA NA LTS-024 AZU1, PTBP1, WDR18, REXO1, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, MADCAM1, ABHD17A, KLF16, KISS1R, MUM1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.198468020834977 155 0.0629507511269618 0.631155017925503 3777 0.170633348470098 2 2 0 -6.73617867459354 LTS-024 NA NA NA NA LTS-024 chr19 1952945 1953403 459 * c(CSNK1G2, CSNK1G2-AS1) NA 0 NA 1.04 1 NA NA NA NA NA LTS-024 chr19 1953404 2345395 391992 * c(MIR1227, MIR4321, IZUMO4, JSRP1, MOB3A, CSNK1G2, CSNK1G2-AS1, AMH, MKNK2, C19orf35, OAZ1, LSM7, PLEKHJ1, BTBD2, SPPL2B, LINGO3, SF3A2, DOT1L, AP3D1) 0.151986858794128 33 0.0838983873142946 0.948758275824941 1012 0.250940492838358 3 3 0 -6.80174318667165 LTS-024 chr19 2345396 2351420 6025 * SPPL2B NA 0 NA 0.608 1 NA NA NA NA NA LTS-024 chr19 2351421 6393310 4041890 * c(LOC100128568, C19orf71, DPP9-AS1, CHAF1A, MIR4747, MIR4746, EBI3, PLIN3, HMG20B, SEMA6B, ZNF554, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, MFSD12, GIPC3, NDUFA11, TICAM1, ZNRF4, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, KDM4B, ZFR2, PIP5K1C, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, TIMM13, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, UHRF1, GTF2F1, SLC39A3, NA NA NA NA NA NA NA NA NA LTS-024 TMPRSS9, HSD11B1L, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, ZBTB7A, FZR1, SIRT6, PIAS4, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, PSPN, NCLN, SPPL2B, DUS3L, SHD, PTPRS, ZNF77, CACTIN, RFX2, CELF5, SAFB, SGTA, ARRDC5, SH3GL1, TBXA2R, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, ZNF556, UBXN6, ACSBG2, CLPP, CAPS, DOHH, ALKBH7, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 S1PR4, DPP9, LONP1, APBA3, SAFB2) 0.201569922237823 130 0.0662611739432041 0.638868978602329 5822 0.253289502223593 2 2 0 -6.73369686045415 LTS-024 NA NA NA NA LTS-024 chr19 6393311 6534934 141624 * c(MIR3940, TUBB4A, SLC25A41, SLC25A23, DENND1C, KHSRP, TNFSF9, CRB3) 0.138129942314911 2 0.0134350288425444 0.911517638466737 368 0.185853920512518 4 4 0 -7.28536803171762 LTS-024 chr19 6534935 6746076 211142 * c(GPR108, C3, TNFSF14, TNFSF9, TRIP10, CD70) 0.193211372544273 12 0.0480507938319315 0.626521567883113 362 0.208361243808726 2 2 0 -6.74589492539093 LTS-024 chr19 6746077 6924672 178596 * c(SH2D3A, ADGRE1, VAV1, TRIP10) 0.162 1 NA 0.639824032234813 289 0.16649248979752 2 2 0 -5.76448888601482 LTS-024 chr19 6924673 7019212 94540 * c(ADGRE1, ADGRE4P, FLJ25758) 0.226389236192929 8 0.0370250880195732 0.607483933359804 152 0.184762440972009 2 2 0 -7.02633509315901 LTS-024 chr19 7019213 7074939 55727 * c(MBD3L2, MBD3L5, MBD3L4, MBD3L3, ZNF557) NA 0 NA 5.503 1 NA NA NA NA NA LTS-024 chr19 7074940 7126787 51848 * c(INSR, ZNF557) 0.095 1 NA 4.25361202626324 86 0.895782597797646 20 20 0 -5.76448031004879 LTS-024 chr19 7126788 7128791 2004 * INSR NA 0 NA 2.674 1 NA NA NA NA NA LTS-024 chr19 7128792 7606408 477617 * c(LOC100128573, PNPLA6, ZNF358, ARHGEF18, INSR, C19orf45, MCOLN1, PEX11G) 0.202029493623911 23 0.0631995084285681 2.66835191264156 471 0.624547817668983 12 10 2 -6.73519856037406 LTS-024 chr19 7606409 7677354 70946 * c(PNPLA6, CAMSAP3) 0.24870577136594 2 0.00636396103067895 1.82460509493072 192 0.45385991230655 17 13 4 -7.29022839813436 LTS-024 chr19 7677355 7712812 35458 * c(PET100, PCP2, XAB2, CAMSAP3, STXBP2) NA 0 NA 1.80644215375829 269 0.387013807046451 8 NA NA -5.76443346205997 LTS-024 chr19 7712813 7734189 21377 * RETN NA 0 NA 0.957 1 NA NA NA NA NA LTS-024 chr19 7734190 7743975 9786 * c(MCEMP1, RETN) 0.435 1 NA 1.00720948073296 39 0.179603736108945 4 4 0 -5.76443523852264 LTS-024 chr19 7743976 8976713 1232738 * c(RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, EVI5L, TRAPPC5, ZNF558, ELAVL1, MCEMP1, FCER2, KANK3, ACTL9, OR2Z1, CD209, CLEC4G, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RPS28, CCL25, SNAPC2, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, MBD3L1, RAB11B, MUC16) 0.45325206989502 57 0.0373239056750107 1.01638657042431 1979 0.23204135120291 4 2 2 -6.86022750752273 LTS-024 chr19 8976714 9000185 23472 * MUC16 0.274 1 NA 0.92780542934481 85 0.237313349920354 4 4 0 -5.76661230907338 LTS-024 chr19 9000186 9027703 27518 * MUC16 0.290286252145913 10 0.129236260821455 1.00963110527547 192 0.40039966889554 4 3 1 -6.75057053185225 LTS-024 chr19 9027704 9028373 670 * MUC16 0.474 1 NA 1.22085110654859 3 0.20392727461851 5 5 0 -5.7644108770269 LTS-024 chr19 9028374 9226017 197644 * c(OR7G1, OR1M1, OR7G2, MUC16) 0.444525999884357 65 0.0848775362145141 1.15349049238991 893 0.888579939325043 4 2 2 -6.74153800056506 LTS-024 chr19 9226018 9251220 25203 * c(OR7G1, OR7G3, ZNF317) 0.48 1 NA 1.0382069224893 41 0.194477790443047 4 4 0 -5.76454795854609 LTS-024 chr19 9251221 11727581 2476361 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, OR7D4, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, OR7D2, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, NA NA NA NA NA NA NA NA NA LTS-024 PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.454755939726355 92 0.0676430444466853 1.00827405319959 4779 0.31361864052193 4 2 2 -6.78106775990496 LTS-024 NA NA NA NA LTS-024 chr19 11727582 12741553 1013972 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.368564204938561 22 0.168832610050459 0.92490039954965 1700 0.299472027499478 3 2 1 -6.8190685592443 LTS-024 chr19 12741554 19791067 7049514 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, DHPS, DNASE2, DAND5, FAM129C, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, NA NA NA NA NA NA NA NA NA LTS-024 SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, SYCE2, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, IL12RB1, INSL3, JAK3, JUNB, JUND, YJEFN3, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, HAPLN4, CYP4F3, LYL1, MIR181C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, WDR83OS, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ATP13A1, PTGER1, MIR181D, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, BST2, MIR639, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PRDX2, TPM4, LOC729966, BORCS8, UBA52, CACNA1A, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, PBX4, KIAA1683, CALR, CCDC130, ELL, PLVAP, RTBDN, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, MED26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 HOMER3, IL27RA, GDF15, TECR, IER2, ADGRE5) 0.451286453993501 249 0.0723224154204648 1.01579800567439 12450 0.288781644417566 4 2 2 -6.76063613683808 LTS-024 NA NA NA NA LTS-024 chr19 19791068 24345092 4554025 * c(HAVCR1P1, ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101, ZNF254) 0.424770945800959 26 0.127021554803173 0.867642060734755 1498 0.314631752402931 3 2 1 -6.85823935398686 LTS-024 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.740504934014788 3 0.125862358683338 3 NA NA -5.7644233693285 LTS-024 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.406 1 NA 1.01308120080633 55 0.193890902713052 4 4 0 -5.76544861217508 LTS-024 chr19 30097269 33229846 3132578 * c(THEG5, POP4, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, TSHZ3, PLEKHF1, C19orf12, ANKRD27, URI1, CCNE1, PDCD5, TDRD12, NA, ZNF536) 0.423442409965068 18 0.121205330023658 1.0243956796619 881 0.366497425053631 4 2 2 -6.73972600615508 LTS-024 chr19 33229847 34717459 1487613 * c(CEBPA, CEBPG, SLC7A9, WDR88, LSM14A, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, CEP89, RHPN2, FAAP24, TDRD12) 0.400302324234883 47 0.0590790952915034 1.31754243192309 993 0.300150489649496 5 3 2 -6.83225218971221 LTS-024 chr19 34717460 34718112 653 * LSM14A NA 0 NA 0.841 1 NA NA NA NA NA LTS-024 chr19 34718113 35851141 1133029 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, MIR5196, WTIP, ZNF792, ZNF599, FAM187B, LGI4, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, HAMP, SCN1B, SCGB1B2P, USF2, PDCD2L, ZNF30, CD22, KIAA0355) 0.451896337706145 44 0.0437514602595323 1.01698915071786 1586 0.238683352775729 4 2 2 -6.81233101773103 LTS-024 chr19 35851142 35863371 12230 * FFAR3 0.374089743477545 2 0.113844191771034 0.428906010161818 40 0.563218022639227 3 2 1 -6.7463463294897 LTS-024 chr19 35863372 38315330 2451959 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, LOC100631378, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, ZNF573, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, NA NA NA NA NA NA NA NA NA LTS-024 KRTDAP, ZNF790, ZNF793, NPHS1, ATP4A, ZNF571, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, LOC644554, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.445119725326236 110 0.0843627518215973 1.00986430833376 4323 0.235401752833546 4 2 2 -6.74240623949994 LTS-024 NA NA NA NA LTS-024 chr19 38315331 38315649 319 * c(LOC100631378, LOC644554) NA 0 NA 1.857 1 NA NA NA NA NA LTS-024 chr19 38315650 38572107 256458 * c(LOC100631378, SIPA1L3, LOC644554, WDR87) 0.353630135296581 5 0.0284341344162259 1.56597666733437 202 0.350911086791175 9 6 3 -6.79968993157027 LTS-024 chr19 38572108 38572237 130 * SIPA1L3 NA 0 NA 1.024 1 NA NA NA NA NA LTS-024 chr19 38572238 39384207 811970 * c(SPINT2, MAP4K1, RASGRP4, RINL, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, HNRNPL, LGALS4, LGALS7, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, LGALS7B, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A) 0.448368422004457 57 0.0752968186728738 1.01038900094807 2067 0.282744887439177 4 2 2 -6.74991281957902 LTS-024 chr19 39384208 39384401 194 * SIRT2 NA 0 NA 1.618 1 NA NA NA NA NA LTS-024 chr19 39384402 39691207 306806 * c(PAK4, FBXO17, FBXO27, SIRT2, NCCRP1, ACP7, NFKBIB, SARS2, MRPS12, CCER2) 0.402606783243969 10 0.0374699879903904 1.3856877565005 382 0.294286232509108 5 3 2 -6.81941002939955 LTS-024 chr19 39691208 39691239 32 * NCCRP1 0.365 1 NA 0.985 1 NA NA NA NA NA LTS-024 chr19 39691240 40376880 685641 * c(LOC100129935, MIR4530, IFNL4, DLL3, CLC, EID2B, LGALS16, EID2, FBL, IFNL2, IFNL3, IFNL1, LGALS13, NCCRP1, SYCN, LEUTX, SELENOV, LGALS17A, PAF1, SAMD4B, MED29, LGALS14, LRFN1, RPS16, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.367383703810758 33 0.0539998947810423 1.40092511653302 1206 0.290673642231626 6 4 2 -6.73747044226682 LTS-024 chr19 40376881 40384094 7214 * FCGBP NA 0 NA 0.687 1 NA NA NA NA NA LTS-024 chr19 40384095 40406019 21925 * FCGBP 0.431 1 NA 0.831907194782801 39 0.417190390424262 3 3 0 -5.76441178787171 LTS-024 chr19 40406020 40406033 14 * FCGBP NA 0 NA 2.83 1 NA NA NA NA NA LTS-024 chr19 40406034 41196379 790346 * c(C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, SERTAD3, SERTAD1, ZNF546, MAP3K10, PSMC4, PRX, SPTBN4, BLVRB, MIR641, CNTD2, LTBP4, FCGBP, NUMBL, SHKBP1) 0.334448606689542 27 0.0442005272557535 1.37638980743358 1740 0.287427190990736 7 5 2 -6.91716104465369 LTS-024 chr19 41196380 41197943 1564 * c(COQ8B, NUMBL) NA 0 NA 0.923 1 NA NA NA NA NA LTS-024 chr19 41197944 41397988 200045 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, CYP2A6, CYP2A7, CYP2G1P, C19orf54, RAB4B, SNRPA, COQ8B, ITPKC, MIA) 0.387401616614338 14 0.0971615851372013 1.00497645811033 434 0.235208645078809 3 2 1 -6.81481152489527 LTS-024 chr19 41397989 41399887 1899 * c(CYP2A7, CYP2G1P) 0.474 1 NA 1.06437231489697 3 0.0662520439936259 4 4 0 -5.76490006879904 LTS-024 chr19 41399888 44983567 3583680 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, LIPE-AS1, CEACAM5, RABAC1, ZNF234, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, ZNF526, IRGQ, ZNF428, LYPD4, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, CADM4, ERF, CYP2G1P, CIC, ETHE1, PRG1, ZNF285, LYPD3, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, GRIK5, GSK3A, CYP2S1, ZNF404, ZNF284, NA NA NA NA NA NA NA NA NA LTS-024 ZNF233, B3GNT8, KCNN4, PINLYP, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, PLAUR, POU2F2, ATP5SL, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CD177, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, ZNF574, PSG10P, PHLDB3, TGFB1, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF576, B9D2, TEX101, CNFN, CEACAM21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 CCDC97, ARHGEF1, ZNF235, CD79A) 0.437565921767797 112 0.0753840446165777 1.01971444637923 4945 0.254451302106803 4 2 2 -6.73333797554223 LTS-024 NA NA NA NA LTS-024 chr19 44983568 44983683 116 * ZNF180 NA 0 NA 0.702536084767451 3 0.0317542648054293 2 NA NA -5.76506749142154 LTS-024 chr19 44983684 44988558 4875 * ZNF180 NA 0 NA 3.606 1 NA NA NA NA NA LTS-024 chr19 44988559 45001346 12788 * ZNF180 0.235 1 NA 2.48002885173745 7 1.04145097957472 12 12 0 -5.76441527168753 LTS-024 chr19 45001347 45024654 23308 * c(CEACAM20, ZNF180) 0.215335384952988 4 0.0143874945699382 2.26511661597453 48 0.847904885606553 11 9 2 -6.7354799234912 LTS-024 chr19 45024655 45166865 142211 * c(MIR4531, CEACAM20, IGSF23, CEACAM22P, PVR) 0.209856546561854 3 0.176672012497735 1.45307365705533 156 0.733095606478591 7 6 1 -6.7362138244212 LTS-024 chr19 45166866 45174695 7830 * PVR NA 0 NA 1.844 1 NA NA NA NA NA LTS-024 chr19 45174696 45296767 122072 * c(CBLC, CEACAM16, CEACAM19, BCL3) 0.27622062375108 6 0.0366537856162225 1.89374639411724 230 0.448343092691303 12 9 3 -6.765582939526 LTS-024 chr19 45296768 45322681 25914 * c(CBLC, BCAM) 0.326 1 NA 1.84008496838686 67 0.336700481036705 8 8 0 -5.76454421669414 LTS-024 chr19 45322682 45368947 46266 * c(BCAM, NECTIN2) 0.352 1 NA 1.72768223231194 28 0.869111182389513 8 8 0 -5.76444721079181 LTS-024 chr19 45368948 45375136 6189 * NECTIN2 NA 0 NA 1.381 1 NA NA NA NA NA LTS-024 chr19 45375137 45649840 274704 * c(APOC4-APOC2, TOMM40, CLASRP, CLPTM1, ZNF296, PPP1R37, APOC1, APOC1P1, APOC2, APOE, NECTIN2, RELB, GEMIN7) 0.349271688310714 9 0.0828730622364375 1.41461514341341 555 0.334429369913141 6 4 2 -6.74895932541514 LTS-024 chr19 45649841 45655112 5272 * c(PPP1R37, NKPD1) NA 0 NA 1.077 1 NA NA NA NA NA LTS-024 chr19 45655113 45803195 148083 * c(NKPD1, BLOC1S3, MARK4, TRAPPC6A, EXOC3L2) 0.414568861875767 5 0.0727633149327324 1.0353550176273 242 0.207179937513282 5 3 2 -6.78321680050974 LTS-024 chr19 45803196 45805552 2357 * MARK4 NA 0 NA 1.28 1 NA NA NA NA NA LTS-024 chr19 45805553 46214701 409149 * c(EML2-AS1, MIR642B, PPP1R13L, CD3EAP, CKM, PPM1N, KLC3, ERCC1, ERCC2, FBXO46, FOSB, EML2, GIPR, GPR4, MIR330, QPCTL, MARK4, RTN2, SNRPD2, MIR642A, VASP, OPA3) 0.324492219503746 24 0.0829407746614973 1.36590557871128 912 0.320060598299463 7 5 2 -6.79076257151319 LTS-024 chr19 46214702 46272046 57345 * c(SIX5, FBXO46, BHMG1) NA 0 NA 1.39455356682659 166 0.289650121492489 6 NA NA -5.76441961254374 LTS-024 chr19 46272047 46274392 2346 * c(SIX5, DMPK) 0.43 1 NA 0.872835970109366 11 0.205687185263978 3 3 0 -5.76450250987718 LTS-024 chr19 46274393 50436115 4161723 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, MIR3191, MIR3190, MIR320E, MIR4324, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, SAE1, MIR4749, MIR4750, MIR5088, RNU6-66P, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PNKP, PTH2, CGB1, CGB2, LMTK3, AP2S1, CPT1C, ALDH16A1, NTN5, CRX, CCDC155, DACT3, IGFL2, AP2A1, DBP, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, FCGRT, NA NA NA NA NA NA NA NA NA LTS-024 ATF5, CARD8, ZC3H4, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, BBC3, DKKL1, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, IRF3, KCNA7, IGFL1, KCNJ14, IGFL3, LHB, LIG1, MIR150, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 NOSIP, HSD17B14, PTOV1, TRPM4, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SULT2B1, SULT2A1, SNORD23, C5AR1, TULP2, CCDC61, MIR769, CA11, FKRP, TBC1D17, FUZ, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.45602338853056 196 0.0505051476307678 1.01264337183267 8214 0.235100528269181 4 2 2 -6.82872269555098 LTS-024 NA NA NA NA LTS-024 chr19 50436116 50665984 229869 * c(SNAR-B2, SNAR-D, MIR4751, SIGLEC11, IZUMO2, ATF5, ZNF473, SIGLEC16, LOC400710, VRK3) 0.471 1 NA 1.03689158189787 285 0.289682122673611 4 4 0 -5.76490196017145 LTS-024 chr19 50665985 53770181 3104197 * c(SIGLEC14, SNAR-F, LOC100129083, ERVV-2, ZNF816-ZNF321P, KLK11, KLK8, FAM71E1, CLDND2, ZNF816, JOSD2, IZUMO2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, ETFB, FPR1, FPR2, FPR3, NAPSB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, GPR32, HAS1, VN1R2, VN1R4, C19orf81, ZNF677, KLK3, KCNC3, KLK1, KLK2, NA NA NA NA NA NA NA NA NA LTS-024 ZNF808, ZNF818P, LIM2, ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, PPP2R1A, ASPDH, KLK15, ZNF701, ZNF83, ZNF415, KLK7, KLK6, KLK10, ZNF350, KLKP1, CLEC11A, ZNF649, SPIB, SNORD88A, SNORD88B, SNORD88C, MIR643, CEACAM18, LINC01530, NR1H2, ZNF28, ZNF137P, ZNF175, MYH14, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, SYT3, ZNF528, ZNF347, ZNF577, C19orf48, SIGLEC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4, ZNF432) 0.445986903916722 150 0.0843100937110498 1.01446738969991 4882 0.265508676055779 4 2 2 -6.74217298470263 LTS-024 NA NA NA NA LTS-024 chr19 53770182 53770261 80 * VN1R4 0.205 1 NA 4.248 1 NA NA NA NA NA LTS-024 chr19 53770262 53793083 22822 * c(BIRC8, VN1R4, FAM90A27P) 0.480045268192343 3 0.0130511813003013 1.38759308165111 59 0.562995757764879 6 3 3 -10.3050158338725 LTS-024 chr19 53793084 53793174 91 * BIRC8 NA 0 NA 0.932 1 NA NA NA NA NA LTS-024 chr19 53793175 54304607 511433 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, ZNF813, TPM3P9, ZNF525, LOC284379, ZNF761, MIR372, MIR373, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, NA NA NA NA NA NA NA NA NA LTS-024 MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, ZNF765, NLRP12, ZNF845) 0.443027184757768 21 0.0427377384253576 0.94285100218451 757 0.290038330502529 4 2 2 -6.77170067843673 LTS-024 NA NA NA NA LTS-024 chr19 54304608 54307143 2536 * NLRP12 NA 0 NA 0.452 1 NA NA NA NA NA LTS-024 chr19 54307144 54313962 6819 * NLRP12 NA 0 NA 0.495479807893577 42 0.0777975013706237 1 NA NA -5.77192667274072 LTS-024 chr19 54313963 54723304 409342 * c(MIR935, LILRB3, OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, PRKCG, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.444862872615818 44 0.076454507746482 0.9937816657817 1183 0.229653615097481 4 2 2 -6.74423034846071 LTS-024 chr19 54723305 54754327 31023 * c(LILRB5, LILRB3, LILRA6) 0.35860448140345 6 0.0644380839773085 0.65953089652754 92 0.394926744675286 6 4 2 -6.80251809215803 LTS-024 chr19 54754328 54800203 45876 * c(MIR4752, LILRB2, LILRB5, LILRA3, LILRA6) 0.467052858373739 9 0.0265094322836231 1.04987697343882 163 0.265558984099962 4 2 2 -7.46545133389828 LTS-024 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.465569864440428 39 0.120422221666041 1 NA NA -5.76581941138034 LTS-024 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.984 1 NA NA NA NA NA LTS-024 chr19 54818558 55281370 462813 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.450452967821476 57 0.0449480973305221 0.990261159937263 912 0.327271608323075 4 2 2 -6.79749768567059 LTS-024 chr19 55281371 55284908 3538 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.227 1 NA 0.929632322511578 6 1.01341600539956 4 4 0 -5.7644275842363 LTS-024 chr19 55284909 55328078 43170 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.342219095984954 10 0.116633519100547 0.9970895095138 101 0.54155001652298 6 4 2 -6.76174976780032 LTS-024 chr19 55328079 55328899 821 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.289 1 NA NA NA NA NA LTS-024 chr19 55328900 55358686 29787 * c(KIR2DS4, KIR3DL1) 0.296680605363558 3 0.0857671265695663 1.60975035164131 53 0.631645426523145 11 8 3 -6.73955890174378 LTS-024 chr19 55358687 55358705 19 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.614 1 NA NA NA NA NA LTS-024 chr19 55358706 55435315 76610 * c(NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NCR1) 0.321500120172892 10 0.163192081779587 1.00029137902264 123 0.647292688513853 4 3 1 -6.73492890970081 LTS-024 chr19 55435316 55447840 12525 * NLRP7 0.48 1 NA 0.878071448042418 27 0.146135079766843 3 3 0 -5.76562167446595 LTS-024 chr19 55447841 56249765 801925 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.452118505942862 66 0.0382931186646235 1.00805600204824 2323 0.253290873973803 4 2 2 -6.83979233274156 LTS-024 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 1.542 1 NA NA NA NA NA LTS-024 chr19 56270381 56284076 13696 * c(RFPL4A, RFPL4AL1) 0.430121971000666 3 0.0510326692750177 1.77582191967298 46 1.85953070608148 9 5 4 -6.73308883914547 LTS-024 chr19 56284077 56901293 617217 * c(NLRP13, NLRP8, NLRP5, ZNF787, NLRP4, ZNF542P, ZNF582, NLRP11, ZSCAN5B, ZNF444, RFPL4AL1, ZSCAN5A, GALP) 0.440493805455177 21 0.105201507322173 1.01739547895174 735 0.278375709196289 4 2 2 -6.73419204316273 LTS-024 chr19 56901294 56960581 59288 * c(ZNF582, ZNF583, ZNF582-AS1, ZNF667) NA 0 NA 0.962011036564174 162 0.185631309154531 4 NA NA -5.76783994085836 LTS-024 chr19 56960582 57036012 75431 * c(ZNF667-AS1, ZNF471, ZNF667) 0.186 1 NA 0.642005573737289 53 0.389627759536524 2 2 0 -5.76442882215395 LTS-024 chr19 57036013 58982044 1946032 * c(A1BG, MIMT1, LOC100128398, PEG3-AS1, ZNF587B, MIR4754, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, ZIM3, ZNF837, ZNF543, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF324, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF773, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF416, VN1R1, ZNF304, ZNF471, USP29, NA NA NA NA NA NA NA NA NA LTS-024 ZNF71, RPS5, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551, ZNF835, ZNF264) 0.190710176702592 113 0.0500432793094688 0.643301104005246 3562 0.18487842633736 2 2 0 -6.75715350380951 LTS-024 NA NA NA NA LTS-024 chr19 58982045 59084001 101957 * c(MZF1-AS1, TRIM28, SLC27A5, ZNF324, CHMP2A, ZNF446, MZF1, ZBTB45, UBE2M) NA 0 NA 0.632124529779903 333 0.117277337364904 2 NA NA -5.76466656652487 LTS-024 chr20 68260 76962 8703 * DEFB125 0.458 1 NA 1.25885176472053 11 0.399488946257363 5 5 0 -5.76446097736391 LTS-024 chr20 76963 26063696 25986734 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100134868, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SDCBP2-AS1, LINC00658, FKBP1A-SDCBP2, SIRPB1, SEC23B, NOP56, CENPB, RBCK1, POLR3F, RBBP9, DSTN, CHGB, RNF24, SLC52A3, HSPA12B, TMC2, TBC1D20, SIRPD, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, C20orf96, MACROD2, SRXN1, NA NA NA NA NA NA NA NA NA LTS-024 LINC00261, BANF2, NANP, DEFB127, SCP2D1, ISM1, CST11, DEFB129, SIRPA, STK35, CSNK2A1, ADRA1D, CST1, CST2, CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, FKBP1A, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, DEFB125, DEFB128, SPEF1, C20orf194, CFAP61, ABHD12, ZNF337, SDCBP2, SNX5, GNRH2, SIRPB2, LOC284788, LOC284798, FAM182A, TMEM230, LINC00652, NXT1, VSX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 FOXA2, LOC339593, IDH3B, RSPO4, TGM6, INSM1, ITPA, LINC00493, DEFB132, C20orf202, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ANGPT4, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, TMEM74B, SIRPG, FERMT1, KIF16B, TASP1, KIZ, NSFL1C, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, TRIB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, RAD21L1, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SOX12, SSTR4, SNORA51, SNORD17, SNORD110, TCF15, TGM3, THBD, LINC01433, FAM182B, ZNF133, NDUFAF5, ZNF343, SYNDIG1, NRSN2, PANK2, ADAM33, SEL1L2, DEFB126, MKKS, FAM110A, SLC4A11, MCM8, ACSS1, ATRN, CST7, ZCCHC3, SCRT2, CDS2, GGTLC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 MGME1, DTD1, PSMF1, ENTPD6, SNPH, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.443082827782523 441 0.0896015988483589 1.03376087844771 14624 0.317260597494244 4 2 2 -6.76829709224437 LTS-024 NA NA NA NA LTS-024 chr20 26063697 26064017 321 * FAM182A 0.4 1 NA 0.909172429185792 7 0.295627500492798 3 3 0 -5.76442933673387 LTS-024 chr20 26064018 26188981 124964 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.34251446114496 9 0.0904471914679745 0.942115505549083 27 0.489443913772911 4 3 1 -6.80070478612011 LTS-024 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.09686116053389 3 0.0964174949546675 4 NA NA -5.76442339294247 LTS-024 chr20 29625845 29625852 8 * FRG1BP 0.116 1 NA 1.637 1 NA NA NA NA NA LTS-024 chr20 29625853 29961625 335773 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, FRG1BP) 0.284439733595842 22 0.111727443562545 1.07964618425916 102 0.394022467644595 5 4 1 -6.77154091573718 LTS-024 chr20 29961626 29965014 3389 * c(DEFB118, DEFB119) 0.456 1 NA 1.66805192190157 3 1.42958770280106 7 7 0 -5.76441227992159 LTS-024 chr20 29965015 30389627 424613 * c(MCTS2P, MIR3193, HM13-AS1, LINC00028, TPX2, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, ID1, BCL2L1, HM13, COX4I2) 0.446530449253762 5 0.0423709806353358 1.09410624015716 410 0.229720889549112 4 2 2 -6.79487611426186 LTS-024 chr20 30389628 30407064 17437 * character(0) NA 0 NA 2.365 1 NA NA NA NA NA LTS-024 chr20 30407065 30753270 346206 * c(DUSP15, CCM2L, TTLL9, FOXS1, HCK, XKR7, PDRG1, MYLK2, TM9SF4) 0.405212762819638 12 0.0584836159392811 1.39541752069853 658 0.280034225499015 5 3 2 -6.79747352657115 LTS-024 chr20 30753271 30754986 1716 * TM9SF4 NA 0 NA 1.41351535510087 37 0.188532805152362 6 NA NA -5.76441232484346 LTS-024 chr20 30754987 30776956 21970 * c(TSPY26P, TM9SF4) NA 0 NA 1.922 1 NA NA NA NA NA LTS-024 chr20 30776957 30777336 380 * TSPY26P 0.253 1 NA 2.08182640618426 7 0.479013520039834 10 10 0 -5.76441167735266 LTS-024 chr20 30777337 31074593 297257 * c(TSPY26P, NOL4L, ASXL1, POFUT1, PLAGL2, KIF3B) 0.239032776996617 16 0.0969755123729697 2.07365729655777 771 0.51503841640284 10 8 2 -6.73517219532534 LTS-024 chr20 31074594 31097546 22953 * NOL4L NA 0 NA 0.701 1 NA NA NA NA NA LTS-024 chr20 31097547 31196675 99129 * c(NOL4L, LOC149950) 0.21453552449849 2 0.321026478658693 1.08542073033326 48 1.24104013227981 6 5 1 -6.73649700427537 LTS-024 chr20 31196676 31315862 119187 * c(LOC149950, COMMD7, C20orf203) 0.467 1 NA 1.0074454996288 89 0.21386595409924 4 4 0 -5.76461726117832 LTS-024 chr20 31315863 32684698 1368836 * c(MIR4755, PXMP4, BPIFB6, BPIFA3, C20orf144, CHMP4B, BPIFA2, SUN5, COMMD7, BPIFB4, ACTL10, DNMT3B, E2F1, RALY, MAPRE1, BPIFA4P, BPIFB3, BPIFA1, CDK5RAP1, NECAB3, SNTA1, BPIFB2, ZNF341, EIF2S2, CBFA2T2, BPIFB1) 0.429117078024564 33 0.136845030965688 1.1309991337325 1760 0.265073358709439 5 3 2 -6.79419198311423 LTS-024 chr20 32684699 32685315 617 * EIF2S2 NA 0 NA 0.915 1 NA NA NA NA NA LTS-024 chr20 32685316 50090709 17405394 * c(ADA, ACOT8, SNORD12B, ZNF663P, LOC100131496, LOC100287792, MIR3194, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, MIR499B, LINC00489, TRERNA1, SGK2, RBM12, MMP24-AS1, MYL9, WFDC2, CEBPB, PROCR, ARFGEF2, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, CEP250, TP53RK, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, PIGU, HMGB3P1, FAM83C, SLC32A1, WFDC3, MROH8, NA NA NA NA NA NA NA NA NA LTS-024 SOGA1, TLDC2, RIMS4, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, FAM65C, CNBD2, R3HDML, CSE1L, ADIG, GTSF1L, WFDC5, WFDC13, AHCY, EPB41L1, EYA2, DLGAP4, ZHX3, NCOA6, SLC9A8, ADNP, ZMYND8, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, TRPC4AP, SNORD12C, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, MOCS3, WFDC10B, LINC00494, LINC01270, GSS, HNF4A, LOC339568, ARHGAP40, EIF6, KCNB1, KCNG1, KCNS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 TMEM189, TMEM189-UBE2V1, SNHG17, SPINT4, LBP, MMP9, ASIP, ZFAS1, MYBL2, NFATC2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, OSER1, PIGT, ERGIC3, PI3, PLCG1, PLTP, CTSA, UQCC1, BCAS4, DDX27, ZNF334, EDEM2, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, ZNFX1, PTGIS, NDRG3, MIR499A, SLC12A5, PREX1, MYH7B, PTPN1, NCOA5, TP53INP2, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, SLPI, SNAI1, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, SNORD12, MIR644A, MIR645, TGM2, TNNC2, TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, SLC2A10, FAM83D, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, PARD6B, TOX2, KIAA1755, MATN4, DPM1, WISP2, EIF2S2, CPNE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, B4GALT5, CD40, RBM39, TTI1, SPATA2, MAFB) 0.44366854995147 276 0.0805543762698954 1.01289300352402 16850 0.261380987190586 4 2 2 -6.74433392459358 LTS-024 NA NA NA NA LTS-024 chr20 50090710 54824029 4733320 * c(MIR4756, ATP9A, TSHZ2, CBLN4, CYP24A1, SUMO1P1, MC3R, NFATC2, PFDN4, ZFP64, DOK5, SALL4, ZNF217, BCAS1) 0.451148931641914 42 0.040399802209702 0.940421476755491 1242 0.237854383541052 4 2 2 -7.12521306871745 LTS-024 chr20 54824030 55214325 390296 * c(FAM210B, GCNT7, CSTF1, FAM209A, FAM209B, MC3R, RTFDC1, CASS4, AURKA, TFAP2C) 0.3390526593088 2 0.00212132034355964 1.14740240758505 503 0.285381033527119 18 12 6 -11.7135145519161 LTS-024 chr20 55743786 62906514 7162729 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ARFRP1, OGFR-AS1, RGS19, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, PHACTR3, BHLHE23, NKAIN4, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, CTCFL, SAMD10, ABHD16B, NA NA NA NA NA NA NA NA NA LTS-024 RBBP8NL, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, APCDD1L, EDN3, EEF1A2, LKAAEAR1, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, GNAS, SLCO4A1, NPBWR2, LINC00176, C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MIR296, MYT1, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, PCMTD2, MRGBP, PPP4R1L, RBM38, ARFGAP1, SLC2A4RG, PSMA7, PMEPA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 RAB22A, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, ZGPAT, RAE1, HELZ2, STX16, TNFRSF6B, VAPB, OSBPL2) 0.438203984174252 277 0.0667273674631773 0.940305113102468 8797 0.239588481540935 4 2 2 -7.18324142934169 LTS-024 NA NA NA NA LTS-024 chr20 62906515 62959313 52799 * c(LINC00266-1, PCMTD2) NA 0 NA 0.866150286484191 33 0.196278578309071 3 NA NA -5.76607587536413 LTS-024 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.284 1 NA 0.512815107615267 25 0.412343101474165 1 1 0 -5.77003038374827 LTS-024 chr21 9907203 11098763 1191561 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.339767219458166 28 0.0957075226624318 0.963213246394627 155 0.551654456958972 4 3 1 -6.78912301375593 LTS-024 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 1.023 1 NA NA NA NA NA LTS-024 chr21 14745307 14756794 11488 * character(0) 0.464 1 NA 0.926390777865907 9 0.64048174143461 4 4 0 -5.76456300136407 LTS-024 chr21 14756795 15966430 1209636 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.471973343167168 14 0.0153858790689799 0.868393907143346 389 0.267925543459953 4 2 2 -9.20723969242759 LTS-024 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 1.397 1 NA NA NA NA NA LTS-024 chr21 15974248 17911552 1937305 * c(USP25, LOC388813, MIR99AHG, MIR99A, NRIP1) 0.462988422413457 7 0.0291596590221099 0.990462502385324 394 0.237372185486407 4 2 2 -7.22773832265936 LTS-024 chr21 17911553 17912094 542 * MIR99AHG NA 0 NA 1.443 1 NA NA NA NA NA LTS-024 chr21 17912095 22643688 4731594 * c(LINC01549, BTG3, CHODL, CXADR, C21orf91-OT1, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, NCAM2, CHODL-AS1, C21orf91, TMPRSS15) 0.392573131847241 15 0.0419146525124341 1.29493812096283 546 0.395678338581237 5 3 2 -6.95698459297617 LTS-024 chr21 22643689 22643987 299 * NCAM2 NA 0 NA 0.763 1 NA NA NA NA NA LTS-024 chr21 22643988 32090777 9446790 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, GRIK1-AS2, MIR4327, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, ADAMTS5, MIR155HG, CYYR1, LINC00161, KRTAP13-1, LINC00189, LINC00314, KRTAP15-1, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, NA NA NA NA NA NA NA NA NA LTS-024 KRTAP22-1, KRTAP20-3, LOC339622, APP, LINC00317, KRTAP26-1, MIR155, NCAM2, ATP5J, LINC00158, LINC00113, LINC00308, MRPL39, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, KRTAP24-1, KRTAP27-1, CLDN8, ADAMTS1) 0.455731807530013 72 0.0675605782188435 0.940937131664942 2497 0.28123702215031 4 2 2 -7.20920997552593 LTS-024 NA NA NA NA LTS-024 chr21 32090778 32090837 60 * character(0) 0.468 1 NA 2.154 1 NA NA NA NA NA LTS-024 chr21 32090838 32537374 446537 * c(KRTAP21-3, KRTAP8-1, KRTAP11-1, KRTAP21-1, KRTAP21-2, TIAM1, KRTAP19-8) 0.438614980296104 10 0.0405128237585198 1.23347744049444 213 0.410132302532553 6 3 3 -6.761542500517 LTS-024 chr21 32537375 32554808 17434 * TIAM1 NA 0 NA 1.045 1 NA NA NA NA NA LTS-024 chr21 32554809 43982296 11427488 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, LINC00310, B3GALT5-AS1, OLIG1, TCP10L, LCA5L, IGSF5, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, DONSON, HUNK, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, NA NA NA NA NA NA NA NA NA LTS-024 IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, MX1, MX2, ZBTB21, PCP4, PIGP, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, PRDM15, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TMPRSS2, TTC3, LINC01548, WRB, TMEM50B, MIR802, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, RSPH1, UMODL1, PAXBP1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.442172356278879 173 0.075248179691257 0.992005645858026 9148 0.745136158328809 4 2 2 -6.7461675917149 LTS-024 NA NA NA NA LTS-024 chr21 43982297 43982312 16 * SLC37A1 0.453 1 NA 1.708 1 NA NA NA NA NA LTS-024 chr21 43982313 44592918 610606 * c(WDR4, CRYAA, NDUFV3, PDE9A, PKNOX1, SLC37A1, U2AF1, CBS) 0.391014527406853 26 0.0891890041515122 1.27687931811127 689 0.30963978424007 5 3 2 -6.78092982223742 LTS-024 chr21 44592919 44834441 241523 * SIK1 NA 0 NA 1.064 1 NA NA NA NA NA LTS-024 chr21 44834442 48022375 3187934 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CSTB, SIK1, RRP1B, DIP2A, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, NA NA NA NA NA NA NA NA NA LTS-024 PCNT, PFKL, PCBP3, C21orf58, YBEY, TSPEAR, AGPAT3, PWP2, S100B, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, MCM3AP) 0.440132709802071 166 0.0730945975421598 0.987601104876991 5279 0.267013507015126 4 2 2 -6.76139355645646 LTS-024 NA NA NA NA LTS-024 chr21 48022376 48022821 446 * S100B NA 0 NA 0.898977302414924 7 0.0395871552039656 3 NA NA -5.76556149014533 LTS-024 chr21 48022822 48056783 33962 * c(PRMT2, S100B) NA 0 NA 1.379 1 NA NA NA NA NA LTS-024 chr21 48056784 48084993 28210 * PRMT2 NA 0 NA 1.52139334219639 87 0.426519451869167 7 NA NA -5.76460349095886 LTS-024 chr22 16157787 16157883 97 * character(0) 0.444 1 NA 1.005 1 NA NA NA NA NA LTS-024 chr22 16157884 18189634 2031751 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, OR11H1, SLC25A18) 0.19834712355997 42 0.070456632405629 0.64132596775847 1158 0.199785582673351 2 2 0 -6.73480972747411 LTS-024 chr22 18189635 18209410 19776 * BCL2L13 NA 0 NA 1.011 1 NA NA NA NA NA LTS-024 chr22 18209411 18210895 1485 * BCL2L13 0.174382842858426 5 0.0888301750533004 0.881773683965205 33 0.35323432539373 8 7 1 -6.73792356809931 LTS-024 chr22 18210896 18211983 1088 * BCL2L13 0.078 1 NA 1.01608677073007 21 0.46475663882653 4 4 0 -5.76441016127257 LTS-024 chr22 18211984 20307253 2095270 * c(FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, TUBA8, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, DGCR6L, NA NA NA NA NA NA NA NA NA LTS-024 DGCR2) 0.121782348716484 67 0.0420789785307661 0.986026426954507 3266 0.362086383729839 4 4 0 -6.74703675781353 LTS-024 NA NA NA NA LTS-024 chr22 20307254 20307256 3 * DGCR6L 0.196 1 NA 0.22 1 NA NA NA NA NA LTS-024 chr22 20307257 20398710 91454 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.388481748344935 39 0.314648393188385 1 NA NA -5.77490978744526 LTS-024 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.203 1 NA NA NA NA NA LTS-024 chr22 20717835 22758660 2040826 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, VPREB1, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, BMS1P20) 0.115374050287186 58 0.0462669076042688 0.980128122436581 2637 0.367483997152756 4 4 0 -6.77283664545558 LTS-024 chr22 22758661 22786849 28189 * character(0) NA 0 NA 1.02893179046218 38 0.180103652785832 4 NA NA -5.76445811795589 LTS-024 chr22 22786850 22841193 54344 * ZNF280B NA 0 NA 0.696 1 NA NA NA NA NA LTS-024 chr22 22841194 22890302 49109 * c(ZNF280A, ZNF280B, PRAME) 0.262 1 NA 0.574835715315802 97 0.135009624831902 2 2 0 -5.78137697211507 LTS-024 chr22 22890303 24342396 1452094 * c(DDTL, IGLL5, ZDHHC8P1, C22orf15, DDT, PRAME, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, ZNF70, GGTLC2, GUSBP11, DERL3, RAB36) 0.231928676071425 40 0.0620140389399128 0.659948883411759 1585 0.386162700381275 2 2 0 -6.89503421939249 LTS-024 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.167 1 NA NA NA NA NA LTS-024 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.251664877439796 55 0.0941221607528277 0 NA NA -5.76480624726568 LTS-024 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.558 1 NA NA NA NA NA LTS-024 chr22 24400149 29182322 4782174 * c(LOC100128531, MIR548J, MIR3199-2, MIR3199-1, CHEK2, SGSM1, ADORA2A, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, GRK3, TTC28, SPECC1L, CABIN1, SEZ6L, PITPNB, TFIP11, TMEM211, GGT1, GGT5, TTC28-AS1, POM121L9P, LRRC75B, SRRD, MN1, PIWIL3, MIAT, UPB1, SUSD2, ASPHD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, TPST2, MYO18B, KIAA1671, HPS4, IGLL3P, LRP5L) 0.225230691295317 63 0.0725542860481938 0.635902489625934 3256 0.160718868228685 2 2 0 -6.80483103157789 LTS-024 chr22 29182323 29182424 102 * CCDC117 NA 0 NA 0.774 1 NA NA NA NA NA LTS-024 chr22 29182425 31536673 2354249 * c(MIR3200, MIR3653, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, EMID1, SELENOM, CCDC117, HORMAD2, DUSP18, MORC2-AS1, AP1B1, CABP7, RNF215, EWSR1, MORC2, PES1, SEC14L2, OSBP2, C22orf31, RHBDD3, SEC14L3, INPP5J, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, NEFH, NF2, OSM, PLA2G3, MTFP1, TUG1, CCDC157, ZMAT5, RFPL1, SMTN, GATSL3, TCN2, SEC14L6, XBP1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, NIPSNAP1, KIAA1656, THOC5, NA NA NA NA NA NA NA NA NA LTS-024 MTMR3, GAL3ST1) 0.169191387402113 94 0.0419235722131962 0.718831676138919 4021 0.226128962878062 3 3 0 -7.31908319092333 LTS-024 NA NA NA NA LTS-024 chr22 31536674 31555997 19324 * character(0) NA 0 NA 0.599 1 NA NA NA NA NA LTS-024 chr22 31555998 51183255 19627258 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, HMGXB4, MIR3201, TOM1, MIR3909, MIR3619, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4764, MIR4535, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, RFPL3S, RFPL3, RFPL2, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, PACSIN2, PHF21B, KLHDC7B, NA NA NA NA NA NA NA NA NA LTS-024 PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, CPT1B, APOBEC3D, CSF2RB, CSNK1E, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, GCAT, CBX6, NPTXR, CBX7, SLC16A8, MAPK8IP2, RBFOX2, RASD2, PATZ1, SH3BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PLXNB2, PISD, MAFF, BRD1, ARHGAP8, APOL2, AP1B1P1, PRR14L, SERHL2, BPIFC, XRCC6, TBC1D22A, C22orf24, CBY1, SUN2, FBXO7, TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, CARD10, PARVB, NCAPH2, H1F0, HMOX1, LOC339666, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, CHKB-CPT1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 OGFRP1, LINC00207, LGALS1, LGALS2, LIMK2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, MB, PIM3, MCM5, MFNG, MGAT3, MPST, SHISA8, ODF3B, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, SNU13, ACR, ACO2, EIF3L, RTCB, GTSE1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, EIF4ENIF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 PANX2, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SLC5A1, SLC5A4, SOX10, SREBF2, SSTR3, ST13, TCF20, TEF, TSPO, TIMP3, MIR658, MIR659, TST, LOC730668, UPK3A, WNT7B, YWHAH, MPPED1, CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, FOXRED2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 SELENOO, L3MBTL2, HDAC10, PLA2G6, LDOC1L, POLDIP3, C22orf23, GALR3, PHF5A, KIAA1644, SHANK3, MICALL1, TUBGCP6, APOL1, EIF3D, CACNA1I, NA, LMF2, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, CELSR1, DEPDC5, PPP6R2, SFI1, ZBED4, JOSD1, RBX1, SCO2) 0.195983495964361 550 0.0568562446734797 0.640300136873298 22444 0.181574989204833 2 2 0 -6.74592951588858 LTS-024 NA NA NA NA LTS-024 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.582271122988933 69 0.241973654269662 2 NA NA -5.76751089853726 LTS-024 chrX 2699993 2800624 100632 * c(XG, GYG2) 0.497 1 NA 0.987414406849471 133 0.194503210998252 4 4 0 -5.76600274278858 LTS-024 chrX 2800625 45051111 42250487 * c(GS1-600G8.3, LINC01546, SUPT20HL1, PHKA2-AS1, LOC100132831, LINC01203, SCARNA9L, CLDN34, MIR23C, PIR-FIGF, MIR4768, MIR4770, MIR4767, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, MSL3, IL1RAPL1, CA5B, CLCN4, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, TCEANC, ARX, NA NA NA NA NA NA NA NA NA LTS-024 FAM9A, FAM9B, FAM9C, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, MXRA5, EGFL6, AMELX, VCX, GK, GPR82, GLRA2, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, GRPR, SH3KBP1, HCCS, CA5BP1, LANCL3, MPC1L, DCAF8L2, ARSH, MAGEB5, TLR8-AS1, SHROOM2, ANOS1, MAP3K15, LOC389906, ARHGAP6, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, STS, MAOA, MAOB, ARSD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 ARSE, ARSF, VCX3B, MID1, FTH1P18, FAM47C, NDP, NHS, GPR143, OTC, TLR7, TLR8, MBTPS2, VCX2, VCX3A, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, BCOR, GEMIN8, TXLNG, WWC3, PRKX, PRPS2, PRRG1, CTPS2, TMEM27, NLGN4X, MID1IP1, ACE2, RBBP7, NYX, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TRAPPC2, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, TBL1X, DYNLT3, TSPAN7, TMSB4X, MIR651, LOC729609, KDM6A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 XK, ZFX, APOO, S100G, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, PUDP, PNPLA4, ZRSR2, USP9X, TMEM47, SRPX, OFD1, PIR, INE2, CASK, AP1S2, GYG2, REPS2, ATXN3L, MED14, RAB9A, SYAP1, SYTL5, PCYT1B, FRMPD4) 0.434532831606462 185 0.114019684119136 1.01671530434404 15552 0.262488919556298 4 2 2 -6.73514742754685 LTS-024 NA NA NA NA LTS-024 chrX 45051112 45606632 555521 * c(LOC392452, MIR221, MIR222, CXorf36) NA 0 NA 0.858543906938599 27 0.158674190010533 3 NA NA -5.78170259672257 LTS-024 chrX 46309797 47658046 1348250 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, ARAF, CXXC1P1, ZNF674-AS1, CDK16, CFP, NDUFB11, KRBOX4, CHST7, RP2, ZNF674, SYN1, TIMP1, LINC01545, UBA1, ZNF41, ZNF157, USP11, RBM10, UXT, SLC9A7, INE1, RGN, JADE3) 0.313 1 NA 1.45566257167841 1671 0.335821524869885 6 6 0 -5.77479338758348 LTS-024 chrX 47658047 49144323 1486277 * c(HDAC6, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, FTSJ1, GATA1, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, ZNF81, KCND1, SPACA5, GLOD5, PRICKLE3, TBC1D25, FOXP3, PLP2, OTUD5, GRIPAP1, ZNF630, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYP, TFE3, SLC35A2, WAS, ZNF182, CACNA1F, MAGIX, PPP1R3F, CCDC120, SLC38A5) 0.301170997742556 26 0.0837062629767837 1.45216592369424 2992 0.319607459400067 7 5 2 -6.83605532728895 LTS-024 chrX 49144324 49772947 628624 * c(GAGE12F, GAGE8, GAGE12D, CLCN5, USP27X-AS1, GAGE1, GAGE2C, GAGE4, GAGE2E, USP27X, MIR188, NA, GAGE2B, GAGE13, MIR532, GAGE12J, GAGE2D, GAGE2A, PAGE1, PPP1R3F, PAGE4) 0 1 NA 0.998849925731176 113 0.265055552283781 4 4 0 -5.76657377094607 LTS-024 chrX 49772948 50213429 440482 * c(MIR500B, CLCN5, DGKK, MIR362, MIR500A, MIR501, MIR502, MIR660, CCNB3, AKAP4) 0.449 1 NA 1.11005316683486 585 0.290507426671696 4 4 0 -5.78720520722107 LTS-024 chrX 50213430 53272607 3059178 * c(DGKK, XAGE3, XAGE5, NUDT10, IQSEC2, GSPT2, SSX7, SSX8, SPANXN5, GPR173, NUDT11, SHROOM4, TSPYL2, XAGE1B, FAM156B, MAGED4B, KDM5C, BMP15, MAGED1) 0.407337418026343 19 0.0762083938831256 1.06559325827977 966 0.230447874226924 4 2 2 -6.88407998913663 LTS-024 chrX 53272608 54522364 1249757 * c(HUWE1, RIBC1, FGD1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, FAM120C, WNK3, SMC1A, TSR2) 0.415550524136448 5 0.219113440938706 0.992933305181707 1787 0.229708455948317 4 2 2 -6.74780116412961 LTS-024 chrX 54522365 54587036 64672 * c(FGD1, GNL3L) NA 0 NA 1.40126165669872 95 0.240613598317736 6 NA NA -5.76441013470251 LTS-024 chrX 54587037 54587059 23 * GNL3L NA 0 NA 0.992 1 NA NA NA NA NA LTS-024 chrX 54587060 57622607 3035548 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, LINC01420, SNORA11, TRO, FAM104B, PAGE5) 0.377420016508047 24 0.0979426037186494 1.03392116064646 1338 0.223766704064104 4 2 2 -6.94715099598716 LTS-024 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 1.02490756939209 125 0.260333093827764 4 NA NA -5.76449980197475 LTS-024 chrX 61999880 62569806 569927 * SPIN4 0.498 1 NA 1.04369122267971 71 0.224986291556463 4 4 0 -5.76824574737244 LTS-024 chrX 62569807 67885432 5315626 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, YIPF6, ZC3H12B, AR, MIR223, MSN, OPHN1, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, LINC01278, STARD8, HEPH) 0.310800340100734 8 0.201025229404527 1.02348834203588 1739 0.25873270094503 4 3 1 -6.73394437467279 LTS-024 chrX 67885433 67932729 47297 * STARD8 NA 0 NA 2.353 1 NA NA NA NA NA LTS-024 chrX 67932730 68424847 492118 * c(EFNB1, PJA1, STARD8) 0.171081824369574 2 0.243244732728172 1.78002852148901 267 0.444975752666666 8 7 1 -6.73360915349511 LTS-024 chrX 68424848 68428365 3518 * character(0) NA 0 NA 0.898 1 NA NA NA NA NA LTS-024 chrX 68428366 71896082 3467717 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, SNX12, RGAG4, NHSL2, DGAT2L6, RAB41, IGBP1, IL2RG, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, CITED1, NONO, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, BCYRN1, RPS4X, TAF1, OGT, SLC7A3, ZMYM3, ACRC, MED12) 0.435341613413243 29 0.125863793766439 1.0136637956104 3479 0.246925202617002 4 2 2 -6.73402013631149 LTS-024 chrX 71896083 71904247 8165 * PHKA1 NA 0 NA 1.552 1 NA NA NA NA NA LTS-024 chrX 71904248 73072556 1168309 * c(CDX4, MAP2K4P1, PABPC1L2A, NAP1L2, PHKA1, CHIC1, PABPC1L2B, NAP1L6, FAM226B, XIST, TSIX) 0.439510865898517 2 0.00565685424949239 1.31045659732807 768 0.279130347425551 6 3 3 -7.00941701344207 LTS-024 chrX 73072557 81753162 8680606 * c(MIR374B, FTX, MIR4328, MIR374C, CYSLTR1, COX7B, UPRT, MAGEE2, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, P2RY10, LPAR4, TTC3P1, KIAA2022, ZCCHC13, PGAM4, MIR374A, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, ATP7A, ATRX, JPX, MAGEE1, SH3BGRL, SLC16A2, MIR545, MIR421, XIST, HMGN5, MAGT1, GPR174, FGF16, ITM2A) 0.406205673271209 15 0.162885089498555 0.998144762238987 2682 0.283680611885682 4 2 2 -6.78072172592083 LTS-024 chrX 82763234 83442981 679748 * c(CYLC1, RPS6KA6, POU3F4) 0.476 1 NA 1.19849023524552 196 0.324149109534379 5 5 0 -5.76477650907031 LTS-024 chrX 83442982 83480811 37830 * character(0) NA 0 NA 0.655 1 NA NA NA NA NA LTS-024 chrX 83480812 83581292 100481 * HDX NA 0 NA 0.63090995545562 89 0.0913877823453554 2 NA NA -5.76506381070102 LTS-024 chrX 83581293 83588791 7499 * HDX NA 0 NA 1.585 1 NA NA NA NA NA LTS-024 chrX 83588792 91874474 8285683 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, PABPC5, PCDH11X, SATL1, CPXCR1, KLHL4, ZNF711, POF1B, TGIF2LX) 0.425697915027946 20 0.107080134773719 1.03868411341106 1252 0.282755981319261 4 2 2 -6.76088681324723 LTS-024 chrX 91874475 91878198 3724 * PCDH11X NA 0 NA 1.2108578196372 101 1.43584733440668 5 NA NA -5.76441013498016 LTS-024 chrX 92925915 96859407 3933493 * c(DIAPH2, FAM133A, RPA4, NAP1L3, BRDTP1) 0 1 NA 0.665389438767588 411 0.217606103753361 2 2 0 -5.85808216050575 LTS-024 chrX 96859408 101913049 5053642 * c(ARMCX4, ARMCX5-GPRASP2, RPL36A-HNRNPH2, TMSB15A, TCEAL2, CSTF2, TCEAL6, TIMM8A, DRP2, CENPI, NOX1, GLA, SRPX2, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, NXF4, PCDH19, TMEM35A, RPL36A, TNMD, ARMCX5, BTK, TSPAN6, TRMT2B, ZMAT1, SYTL4, GPRASP1, ARMCX2) 0.211533645380318 25 0.0579100451850396 0.66594552062781 2382 0.275219921029462 2 2 0 -6.83493768984974 LTS-024 chrX 101913050 101913147 98 * c(ARMCX5-GPRASP2, GPRASP1) NA 0 NA 1.42 1 NA NA NA NA NA LTS-024 chrX 101913148 101973624 60477 * c(ARMCX5-GPRASP2, GPRASP2, GPRASP1) NA 0 NA 1.02507651860735 94 0.197223104883726 4 NA NA -5.76444194225079 LTS-024 chrX 101973625 110488777 8515153 * c(LINC00630, MIR3978, MID2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, SLC25A53, GLRA4, PAK3, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, ZCCHC18, SERPINA7, SNORD96B, TDGF1P3, NA NA NA NA NA NA NA NA NA LTS-024 RNF128, MORC4, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, AMMECR1) 0.193684260228063 27 0.0912704880796744 0.669951062750373 4812 0.186398527559015 2 2 0 -7.08961930842343 LTS-024 NA NA NA NA LTS-024 chrX 110488778 110488782 5 * CAPN6 NA 0 NA 0.933 1 NA NA NA NA NA LTS-024 chrX 110488783 110932023 443241 * c(DCX, LINC00890, ALG13, CAPN6) 0 1 NA 1.00497897342041 324 0.470050150039294 4 4 0 -5.76464474230539 LTS-024 chrX 110932024 110951310 19287 * ALG13 NA 0 NA 0.646 1 NA NA NA NA NA LTS-024 chrX 110951311 130679099 19727789 * c(ZBTB33, TEX13C, PRR32, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, TENM1, ENOX2, STAG2, UTP14A, PGRMC1, SLC6A14, DCAF12L1, ACTRT1, GPR119, RBMXL3, DOCK11, AMOT, ARHGAP36, AKAP14, RHOXF1, NKAPP1, ZCCHC12, AGTR2, ELF4, CT83, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, HTR2C, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, OR13H1, NA NA NA NA NA NA NA NA NA LTS-024 IGSF1, IL13RA1, IL13RA2, LAMP2, SH2D1A, NDUFA1, OCRL, ZDHHC9, LUZP4, RBMX2, PLS3, SASH3, WDR44, TMEM255A, MIR448, ZNF280C, NKRF, THOC2, KIAA1210, LRCH2, RPL39, BCORL1, CXorf56, CT47B1, UPF3B, CT47A7, SMARCA1, SNORA35, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, XPNPEP2, MIR766, RNF113A, NKAP, LONRF3, ALG13, CUL4B, APLN, SLC25A14, KLHL13, AIFM1, RAB33A) 0.17571931534794 75 0.0816978436536587 0.642213107688422 7072 0.200894624079157 2 2 0 -6.80555936033283 LTS-024 NA NA NA NA LTS-024 chrX 130679100 131157300 478201 * c(FIRRE, IGSF1, STK26) NA 0 NA 1.002 1 NA NA NA NA NA LTS-024 chrX 131157301 132091051 933751 * c(HS6ST2-AS1, STK26, MBNL3, RAP2C, HS6ST2, FRMD7) 0.160747837056839 13 0.0374629731731794 0.9037996718547 526 0.20699956750863 3 3 0 -6.85173715040049 LTS-024 chrX 132091052 132091057 6 * HS6ST2 NA 0 NA 0.707 1 NA NA NA NA NA LTS-024 chrX 132091058 148851528 16760471 * c(FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, FGF13-AS1, LINC00893, CXorf51B, MIR320D2, MIR514B, LINC00629, CDR1, SLC9A6, PLAC1, SLITRK4, SPANXN3, MAGEC3, ADGRG4, FMR1NB, LINC00889, FAM122B, FAM122C, NA, NA, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, FMR1, AFF2, LDOC1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, ATP11C, LINC00632, HPRT1, IDS, CCDC160, NA NA NA NA NA NA NA NA NA LTS-024 CXorf66, LOC389895, UBE2NL, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, MAGEA11, MCF2, FAM127C, CT45A3, CT45A5, SPANXN4, SPANXN1, SPANXN2, MIR424, TFDP3, MAGEC2, VGLL1, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SMIM10, SMIM10L2B, SPANXC, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-024 ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, TMEM185A, SLITRK2, MIR503HG, FAM127A, HS6ST2, TMEM257, CXorf40A, MMGT1, ARHGEF6, CD40LG, MAGEC1) 0.213235975386914 66 0.0869663386371075 0.658896925729511 5119 0.213222510963191 2 2 0 -6.99065188246657 LTS-024 NA NA NA NA LTS-024 chrX 148851529 148853651 2123 * character(0) NA 0 NA 0.08 1 NA NA NA NA NA LTS-024 chrX 148853652 149014081 160430 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.394306687802717 39 0.255949783156727 1 NA NA -5.786513369298 LTS-024 chrX 149014082 149014097 16 * c(MAGEA8-AS1, MAGEA8) NA 0 NA 0.691 1 NA NA NA NA NA LTS-024 chrX 149014098 153630502 4616405 * c(CSAG4, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, GABRA3, GABRE, OPN1MW, SRPK3, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA12, NA NA NA NA NA NA NA NA NA LTS-024 MECP2, MTM1, ATP2B3, NSDHL, PLXNB3, CXorf40B, AVPR2, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, RPL10, BGN, SLC6A8, SSR4, MIR767, ZNF185, PRRG3, NAA10, TMEM187, TKTL1, CD99L2, MTMR1, FATE1, FAM58A, GPR50) 0.174950716995504 47 0.092303430159672 0.695058722064062 4971 0.206717373622372 2 2 0 -7.23448254084293 LTS-024 NA NA NA NA LTS-024 chrX 153630503 153701993 71491 * c(DNASE1L1, GDI1, ATP6AP1, PLXNA3, RPL10, TAZ, FAM50A) 0.14 1 NA 1.02794613121334 502 0.194256525084723 4 4 0 -5.7644948845415 LTS-024 chrX 153701994 153705991 3998 * LAGE3 NA 0 NA 0.386 1 NA NA NA NA NA LTS-024 chrX 153705992 154488225 782234 * c(SMIM9, CMC4, RAB39B, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, IKBKG) 0 1 NA 0.653455778037117 1209 0.195920251375169 2 2 0 -5.77240970537352 LTS-024 chrX 154488226 154774986 286761 * c(RAB39B, CLIC2, TMLHE) NA 0 NA 0.652339834724286 191 0.156565607217744 2 NA NA -5.7684121035584 LTS-024 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.195551830415738 25 0.187835317942784 0 NA NA -6.48506833807444 LTS-024 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 1.30372095113913 19 0.637728997971553 6 NA NA -5.82407672698521 LTS-024 chr1 65893 881627 815735 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.079 1 NA 0.734760234766065 133 0.255671194807278 2 2 0 -5.88365066405092 LTS-025 chr1 881628 1404380 522753 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, MIR429, HES4, SCNN1D, TMEM88B, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.0660854588541107 62 0.0593413076913485 0.686162172855696 2188 0.261262714275522 2 2 0 -6.79434349663005 LTS-025 chr1 1404381 1404589 209 * ATAD3C NA 0 NA 0.43 1 NA NA NA NA NA LTS-025 chr1 1404590 1418571 13982 * c(ATAD3C, ATAD3B) NA 0 NA 0.386616667064988 45 0.195178636125986 1 NA NA -5.76628629405563 LTS-025 chr1 1418572 1420381 1810 * ATAD3B NA 0 NA 0.942 1 NA NA NA NA NA LTS-025 chr1 1420382 1564813 144432 * c(MIB2, SSU72, TMEM240, ATAD3A, FNDC10, ATAD3B) 0.0318385370809368 14 0.0595369033217454 0.724571995359621 424 0.276513363448691 2 2 0 -6.80117672332548 LTS-025 chr1 1564814 1582202 17389 * c(MIB2, MMP23B, CDK11B) 0.461 1 NA 0.836771241506326 80 0.368681938795042 3 3 0 -5.76547033543651 LTS-025 chr1 1582203 1603048 20846 * c(SLC35E2B, CDK11B) 0.273853165485514 9 0.172092271761401 0.737544721461509 168 0.317337061149878 4 3 1 -6.76785461863755 LTS-025 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.487 1 NA NA NA NA NA LTS-025 chr1 1606859 1635539 28681 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.026475800154489 2 0.0622253967444162 0.495724877242148 50 0.299423484144352 3 3 0 -6.82339878849378 LTS-025 chr1 1635540 1647814 12275 * c(CDK11A, SLC35E2B, CDK11B) 0.464 1 NA 0.421282187844964 74 0.296016127533769 1 1 0 -5.76707742729977 LTS-025 chr1 1647815 1661298 13484 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.414911797301273 14 0.103032828439599 0.518328213682966 90 0.217625647550812 2 1 1 -6.86116213753348 LTS-025 chr1 1661299 1661704 406 * c(SLC35E2B, SLC35E2) 0.068 1 NA 0.50574802968818 9 0.274031526977787 2 2 0 -5.76460602938628 LTS-025 chr1 1661705 1663831 2127 * c(SLC35E2B, SLC35E2) 0.131975750421011 2 0.015556349186104 0.524160434349906 16 0.168555913077333 16 14 2 -6.96834690666494 LTS-025 chr1 1663832 1663851 20 * c(SLC35E2B, SLC35E2) 0.102 1 NA 1.17 1 NA NA NA NA NA LTS-025 chr1 1663852 2286947 623096 * c(LOC100129534, CALML6, FAAP20, GABRD, GNB1, TMEM52, PRKCZ, SKI, NADK, SLC35E2B, MORN1, CFAP74, SLC35E2) 0.0825767483041103 37 0.0689148514962976 0.6933464271623 923 0.288060961203224 2 2 0 -6.88813573034913 LTS-025 chr1 2286948 2306026 19079 * MORN1 0 1 NA 0.629364257616589 27 0.300257515307403 2 2 0 -5.76450527619821 LTS-025 chr1 2306027 6488449 4182423 * c(NA, LINC01134, TTC34, MIR4251, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, DFFB, MEGF6, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, C1orf174, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, AJAP1, TP73-AS1, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, MMEL1, MORN1, ESPN, KCNAB2, TNFRSF14, PLCH2, CEP104) 0.013658627634238 69 0.0371694353255621 0.734361108579118 3227 0.482730712069991 2 2 0 -7.41885732259094 LTS-025 chr1 6488450 6501044 12595 * c(MIR4252, ESPN) 0.128 1 NA 0.538751966737118 15 0.258345412928026 2 2 0 -5.76819220835666 LTS-025 chr1 6501045 6661958 160914 * c(ZBTB48, PLEKHG5, NOL9, TAS1R1, ESPN, TNFRSF25, KLHL21) 0.0428860404443673 15 0.0476628037062745 0.711861728063778 687 0.271464923675406 2 2 0 -6.75730384815802 LTS-025 chr1 6661959 11597670 4935712 * c(ENO1-AS1, APITD1-CORT, MTOR-AS1, ANGPTL7, UBE4B, MASP2, UTS2, PARK7, RBP7, CORT, C1orf127, PHF13, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, UBIAD1, TNFRSF9, CENPS, MIR34A, RERE, SLC45A1, PEX14, PGD, PIK3CD, EXOSC10, ERRFI1, CASZ1, DNAJC11, CTNNBIP1, DISP3, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, THAP3, VAMP3, H6PD, KLHL21) 0.050269393330287 91 0.0505360954912125 0.679935992083205 5008 0.22981311128796 2 2 0 -6.86964979162166 LTS-025 chr1 11597671 11708247 110577 * character(0) NA 0 NA 0.093 1 NA NA NA NA NA LTS-025 chr1 11708248 11716159 7912 * c(FBXO2, FBXO44) 0.458 1 NA 0.134035318558085 50 0.0287375243561871 0 0 0 -8.3051954243233 LTS-025 chr1 11716160 11718290 2131 * FBXO44 NA 0 NA 0.754 1 NA NA NA NA NA LTS-025 chr1 11718291 12516162 797872 * c(NPPA-AS1, MIR4632, MAD2L2, CLCN6, FBXO6, DRAXIN, MTHFR, NPPA, NPPB, PLOD1, VPS13D, AGTRAP, MIIP, TNFRSF1B, KIAA2013, FBXO44, TNFRSF8, MFN2) 0.0710718708988153 47 0.0496595160071537 0.682038510128399 1858 0.242127665369278 2 2 0 -6.8649005693059 LTS-025 chr1 12516163 12520199 4037 * VPS13D NA 0 NA 1.05 1 NA NA NA NA NA LTS-025 chr1 12520200 12727142 206943 * c(AADACL4, VPS13D, SNORA59B, DHRS3) 0.048 1 NA 1.26868541517016 174 0.312502479586203 4 4 0 -5.76530616626309 LTS-025 chr1 12727143 12776069 48927 * character(0) NA 0 NA 0.624 1 NA NA NA NA NA LTS-025 chr1 12776070 12907710 131641 * c(AADACL3, HNRNPCL1, PRAMEF12, PRAMEF11, HNRNPCL3, PRAMEF1, C1orf158) 0.0796436857193243 16 0.0700941925792239 0.760440163004728 244 0.852769678668655 1 1 0 -6.80446333926547 LTS-025 chr1 12907711 12907885 175 * c(HNRNPCL1, HNRNPCL3) 0.431 1 NA 0.822955450173296 5 0.213597050541434 3 3 0 -5.76445133827563 LTS-025 chr1 12907886 13922400 1014515 * c(PDPN, LRRC38, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF2, PRAMEF22, NA) 0.323953296284639 9 0.170162014301404 0.699756342935707 139 0.378807515050125 2 1 1 -6.79984262898908 LTS-025 chr1 13922401 13940864 18464 * PDPN 0.115 1 NA 0.642487278698477 18 0.233214339405996 2 2 0 -5.76441937983766 LTS-025 chr1 13940865 16349137 2408273 * c(PDPN, CTRC, FHAD1, CLCNKA, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.0540952194501669 39 0.0603369866401622 0.680039624691703 2201 0.271550004143473 2 2 0 -6.7849190222495 LTS-025 chr1 16349138 16360347 11210 * c(CLCNKA, CLCNKB) 0.235 1 NA 0.718604848906146 87 0.196835368407411 2 2 0 -5.76633158673619 LTS-025 chr1 16360348 16737449 377102 * c(CLCNKA, CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, RSG1) 0.161098738640791 18 0.171702204583469 0.664422543172443 757 0.299977378689971 2 2 0 -6.97728493078149 LTS-025 chr1 16737450 16862454 125005 * c(CROCCP3, SPATA21, NECAP2) 0.466 1 NA 0.686480429967545 109 0.227755012163836 2 2 0 -5.76952349644681 LTS-025 chr1 16862455 16976679 114225 * c(MST1P2, NBPF1, CROCCP2) 0.278279657894927 19 0.142133143247297 0.640823526934555 88 0.609188343368391 4 3 1 -6.817596131299 LTS-025 chr1 16976680 16976697 18 * MST1P2 NA 0 NA 0.542 1 NA NA NA NA NA LTS-025 chr1 16976698 17010053 33356 * MST1P2 0.265238762077049 6 0.102307379987956 0.49047854259151 58 0.362598655036114 4 3 1 -6.86028361839356 LTS-025 chr1 17010054 17010147 94 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-025 chr1 17010148 17197619 187472 * c(MST1L, ESPNP, CROCC) 0.235115474282513 35 0.172017157635535 0.669810656972406 272 0.340093606718186 3 2 1 -7.02124365806945 LTS-025 chr1 17197620 17248500 50881 * CROCC 0.098 1 NA 0.645059333642219 9 0.22728671320603 2 2 0 -5.76441457782327 LTS-025 chr1 17248501 20641050 3392550 * c(LOC100506730, MINOS1-NBL1, MIR4695, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, PADI4, AKR7L, TMCO4, PLA2G2D, PADI1, PLA2G2E, HTR6, PADI6, PLA2G2C, MFAP2, MINOS1, NBL1, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, RCC2, SDHB, RPS14P3, PLA2G2F, TAS1R2, ACTL8, CAPZB, IGSF21, AKR7A2, ALDH4A1, CROCC) 0.0424032022879713 103 0.0534678053222454 0.716098231566358 3985 0.339064851480466 2 2 0 -6.92208257313343 LTS-025 chr1 20641051 20644013 2963 * VWA5B1 NA 0 NA 0.627 1 NA NA NA NA NA LTS-025 chr1 20644014 24859780 4215767 * c(MIR3115, MIR4253, LOC100506801, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, RCAN3, LYPLA2, CNR2, MYOM3, VWA5B1, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, LINC01141, ID3, SH2D5, LDLRAD2, HP1BP3, WNT4, CAMK2N1, ASAP3, PNRC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, PINK1, TCEA3, NA NA NA NA NA NA NA NA NA LTS-025 TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, USP48, NBPF3, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.0804952681011631 175 0.0742727861682113 0.60003233020959 5740 0.265894754641502 2 2 0 -7.02967006212543 LTS-025 NA NA NA NA LTS-025 chr1 24859781 24861561 1781 * RCAN3 NA 0 NA 0.487 1 NA NA NA NA NA LTS-025 chr1 24861562 25599166 737605 * c(SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, RHD, RUNX3) 0.0731457290982345 13 0.0694040566316053 0.555615159277915 583 0.232698091316406 2 2 0 -6.98382037664815 LTS-025 chr1 25599167 25656954 57788 * c(RSRP1, RHD) 0.009 1 NA 1.02651246568417 74 0.340763032986458 3 3 0 -5.76666061207719 LTS-025 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.764 1 NA NA NA NA NA LTS-025 chr1 25666924 28261600 2594677 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, FAM76A, EXTL1, FGR, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, AHDC1, SMPDL3B, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, PPP1R8, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPA2, RPS6KA1, GPATCH3, ACTG1P20, LOC646471, CEP85, SLC9A1, SCARNA1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, NA NA NA NA NA NA NA NA NA LTS-025 ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, TRIM63, SYTL1, FCN3, MAP3K6, UBXN11, THEMIS2) 0.0572422086903927 92 0.0629600649635924 0.582894819815354 4356 0.231086600416306 2 2 0 -7.04185586841539 LTS-025 NA NA NA NA LTS-025 chr1 28261601 28268706 7106 * SMPDL3B 0.039 1 NA 0.545619876730076 9 0.607094812291384 2 2 0 -5.76474502462857 LTS-025 chr1 28268707 33231258 4962552 * c(FAM229A, MATN1-AS1, MIR4254, MIR4420, PTPRU, KHDRBS1, GMEB1, RCC1, RAB42, COL16A1, DCDC2B, LINC01225, TXLNA, EPB41, EYA3, FABP3, DNAJC8, KPNA6, RNU11, SMPDL3B, LINC01226, HCRTR1, HDAC1, MTMR9LP, ZBTB8OS, SERINC2, LCK, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, ZCCHC17, MED18, TRNAU1AP, BSDC1, XKR8, TMEM39B, PEF1, IQCC, TMEM234, PTAFR, ADGRB2, KIAA1522, RBBP4, TINAGL1, SRSF4, MARCKSL1, ZBTB8A, PHACTR4, NA NA NA NA NA NA NA NA NA LTS-025 SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, LAPTM5, CCDC28B, NKAIN1, PTP4A2, SYNC, TSSK3, SESN2, SNHG3, FAM167B, SNHG12, EIF3I, SPOCD1, ATPIF1, SNRNP40, SDC3, PUM1) 0.0334023473642264 58 0.0499412964524256 0.585658545549929 4928 0.233583236419149 2 2 0 -7.29171135652475 LTS-025 NA NA NA NA LTS-025 chr1 33231259 33231380 122 * KIAA1522 0.123 1 NA 0.525741381879612 3 0.321031670296457 2 2 0 -5.76444039905568 LTS-025 chr1 33231381 33354935 123555 * c(FNDC5, HPCA, KIAA1522, S100PBP, YARS) 0.0699567659961681 10 0.0716702324694306 0.584640769688321 399 0.221633361739454 2 2 0 -6.79591610561524 LTS-025 chr1 33354936 33359122 4187 * HPCA NA 0 NA 0.817 1 NA NA NA NA NA LTS-025 chr1 33359123 33476292 117170 * c(TMEM54, RNF19B, AK2, HPCA) 0.401349558647289 4 0.0581262992686328 0.991301759150929 198 0.259837366702327 4 2 2 -6.96976679002371 LTS-025 chr1 33476293 33641968 165676 * c(AZIN2, AK2, TRIM62) 0 1 NA 1.00394875611815 183 0.28563568669079 3 3 0 -5.76949127939107 LTS-025 chr1 33641969 35223348 1581380 * c(MIR3605, CSMD2, HMGB4, A3GALT2, ZNF362, PHC2, GJB5, CSMD2-AS1, TRIM62, ZSCAN20, C1orf94) 0.036071384786973 25 0.15273606865003 1.08398684127765 961 0.600227161459919 4 4 0 -6.77941337021517 LTS-025 chr1 35223349 35227662 4314 * c(GJB4, GJB5) 0 1 NA 1.33795690681315 39 0.657422957211996 4 4 0 -5.76444817809096 LTS-025 chr1 35227663 35320017 92355 * c(SMIM12, GJB4, GJA4, GJB3) 0.336234396855236 9 0.199378409061764 1.1052829964819 129 0.609570068360709 3 2 1 -6.73743903025132 LTS-025 chr1 35320018 35365379 45362 * c(SMIM12, DLGAP3) 0 1 NA 1.15065516481596 103 0.277828285210851 4 4 0 -5.76619210706947 LTS-025 chr1 35365380 36307104 941725 * c(TMEM35B, C1orf216, AGO4, NCDN, TFAP2E, PSMB2, DLGAP3, CLSPN, SFPQ, LOC653160, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.011125796813928 16 0.09425 1.02673767368329 1285 0.441409138072969 3 3 0 -6.79468856568147 LTS-025 chr1 36307105 36307120 16 * AGO4 0.478 1 NA 2.049 1 NA NA NA NA NA LTS-025 chr1 36307121 36807481 500361 * c(COL8A2, AGO3, AGO4, AGO1, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, SH3D21, STK40, THRAP3) 0.236159553650122 15 0.244287554991673 1.00418332395945 1009 0.321320677659309 3 2 1 -6.83277395410339 LTS-025 chr1 36807482 36808363 882 * STK40 0 1 NA 1.04768977413892 19 0.477300186293969 3 3 0 -5.76443682519828 LTS-025 chr1 36808364 37627092 818729 * c(OSCP1, CSF3R, GRIK3, MRPS15, STK40, LSM10) 0.0212911718036241 16 0.11325 1.08406226719642 532 0.731631146189522 4 4 0 -6.75078253010405 LTS-025 chr1 37627093 37958339 331247 * c(MIR4255, MEAF6, LINC01137, ZC3H12A) 0.451 1 NA 1.11784490687996 73 0.134722939946934 4 4 0 -5.87202288676736 LTS-025 chr1 37958340 38182333 223994 * c(MIR5581, RSPO1, EPHA10, GNL2, C1orf109, CDCA8, MEAF6, DNALI1, SNIP1) 0.378288758369289 22 0.159594887570148 1.02015303175495 530 0.358022094123913 4 2 2 -6.77352324576305 LTS-025 chr1 38182334 38185082 2749 * EPHA10 0 1 NA 1.11655553516086 49 0.386810122124837 4 4 0 -5.7645229545704 LTS-025 chr1 38185083 38266550 81468 * c(MANEAL, EPHA10) 0.188643246617693 9 0.246861522135612 1.07432877675925 199 0.554951708540701 5 4 1 -6.76033538678927 LTS-025 chr1 38266551 38268918 2368 * c(MANEAL, YRDC) 0.428 1 NA 1.13689357509285 15 0.157427836831749 4 4 0 -5.76480614030151 LTS-025 chr1 38268919 39763242 1494324 * c(MIR3659, GJA9-MYCBP, SF3A3, C1orf122, FHL3, MACF1, MYCBP, LINC01343, INPP5B, MTF1, NDUFS5, UTP11, POU3F1, RHBDL2, RRAGC, AKIRIN1, YRDC) 0.449279443582008 24 0.0978434771177555 1.00327636629605 1120 0.265703157257407 3 2 1 -7.56339356498892 LTS-025 chr1 39763243 39879752 116510 * c(MACF1, KIAA0754) 0 1 NA 0.992639294242869 433 0.214292080482271 3 3 0 -5.7687279830599 LTS-025 chr1 39879753 40362461 482709 * c(PPIE, MACF1, HEYL, BMP8A, MYCL, HPCAL4, TRIT1, OXCT2, KIAA0754, BMP8B, SNORA55, PPIEL, NT5C1A, PABPC4) 0.33504814508504 27 0.180140329914038 1.03649699198804 989 0.35002634340951 3 2 1 -6.75541049399335 LTS-025 chr1 40362462 40366116 3655 * MYCL 0 1 NA 1.00523457276264 43 0.450080787629437 3 3 0 -5.76445711555075 LTS-025 chr1 40366117 41483008 1116892 * c(NFYC-AS1, SLFNL1-AS1, ZMPSTE24, CAP1, TMCO2, ZNF684, COL9A2, CTPS1, CITED4, SLFNL1, ZFP69, MIR30C1, MIR30E, MYCL, NFYC, PPT1, RLF, SMAP2, EXO5, ZFP69B, MFSD2A, KCNQ4, RIMS3) 0.16221195501613 27 0.223737368931545 1.01804972951774 1528 0.432268750583852 3 3 0 -6.94169146771961 LTS-025 chr1 41483009 41487337 4329 * c(SLFNL1-AS1, SLFNL1) 0.485 1 NA 1.08651881992434 47 0.288584205498629 4 4 0 -5.7649245900069 LTS-025 chr1 41487338 41973095 485758 * c(SLFNL1-AS1, EDN2, SLFNL1, SCMH1, HIVEP3) 0.436195152770002 10 0.0492481246117837 1.01665758683759 272 0.320341010689354 4 2 2 -7.80274072133879 LTS-025 chr1 41973096 41976747 3652 * HIVEP3 0 1 NA 1.08825569067362 75 0.290413571519174 4 4 0 -5.76482808254987 LTS-025 chr1 41976748 43212404 1235657 * c(PPIH, CLDN19, FOXJ3, RIMKLA, GUCA2A, GUCA2B, YBX1, HIVEP3, P3H1, CCDC30, PPCS, ZMYND12) 0.0929426477295294 23 0.197074011497978 1.07414742256162 775 0.560265649476058 3 3 0 -6.82462255252423 LTS-025 chr1 43212405 43213103 699 * P3H1 0.473 1 NA 1.22472435485444 15 0.253393106983333 4 4 0 -5.76441063021607 LTS-025 chr1 43213104 43317793 104690 * c(LOC100129924, ERMAP, SVBP, ZNF691, P3H1, C1orf50) 0.393210308974416 10 0.198140354294626 1.05646637997483 332 0.277365000809022 4 2 2 -6.76234228699948 LTS-025 chr1 43317794 43417958 100165 * c(ZNF691, SLC2A1) 0 1 NA 1.04189555966589 103 0.292765628629253 3 3 0 -5.77165445891435 LTS-025 chr1 43417959 43885575 467617 * c(EBNA1BP2, MED8, TMEM125, CFAP57, C1orf210, SZT2, MPL, SLC2A1-AS1, FAM183A, ELOVL1, SLC2A1, TIE1, CDC20) 0.126335695248349 10 0.245819355534823 1.03367977404562 727 0.366760822776271 3 3 0 -6.83220462711172 LTS-025 chr1 43885576 43885839 264 * SZT2 NA 0 NA 1.318 1 NA NA NA NA NA LTS-025 chr1 43885840 43897523 11684 * SZT2 0.190750787431127 6 0.250453721606741 1.18795560149662 144 0.430114740252458 6 5 1 -6.74059307942114 LTS-025 chr1 43897524 43898386 863 * SZT2 0 1 NA 1.20017924852483 15 1.65450158514221 4 4 0 -5.76441029312707 LTS-025 chr1 43898387 43919413 21027 * c(SZT2, HYI) 0.466817207479332 9 0.0395646447110436 1.1356732320432 233 0.252490262129119 4 2 2 -9.15002160249469 LTS-025 chr1 43919414 44063668 144255 * c(SZT2, PTPRF, HYI) 0 1 NA 1.17595250778246 79 0.316152340651131 4 4 0 -5.76651864320159 LTS-025 chr1 44063669 44121476 57808 * c(PTPRF, KDM4A) 0 1 NA 1.21174679469121 172 0.260629768002414 4 4 0 -5.76460169229547 LTS-025 chr1 44121477 44125976 4500 * KDM4A NA 0 NA 0.839 1 NA NA NA NA NA LTS-025 chr1 44125977 44584512 458536 * c(KDM4A-AS1, KLF17, CCDC24, DPH2, ATP6V0B, ST3GAL3, SLC6A9, B4GALT2, ARTN, IPO13, KDM4A) 0.160647219872165 9 0.228744641710164 1.06772765120614 735 0.33751123589396 4 3 1 -6.90412164013982 LTS-025 chr1 44584513 44595113 10601 * KLF17 0.414 1 NA 0.928835991624088 11 0.668614102589691 3 3 0 -5.76441259779023 LTS-025 chr1 44595114 45267302 672189 * c(MIR5584, KIF2C, PLK3, KLF17, BEST4, SNORD55, C1orf228, RNF220, DMAP1, RPS8, ERI3, TMEM53, SNORD46, SNORD38A, SNORD38B) 0.258668327663939 13 0.24780182321715 1.0346358430612 653 0.401172359735709 3 2 1 -6.80495204949247 LTS-025 chr1 45267303 45271828 4526 * c(PLK3, TCTEX1D4) 0.446 1 NA 0.972849907983786 63 0.224449895879612 3 3 0 -5.76446932090298 LTS-025 chr1 45271829 46751758 1479930 * c(TSPAN1, AKR1A1, TESK2, LRRC41, TOE1, CCDC163, BTBD19, CCDC17, MAST2, MMACHC, TCTEX1D4, IPP, LINC01144, MUTYH, NASP, PRDX1, TMEM69, LURAP1, POMGNT1, ZSWIM5, GPBP1L1, RPS15AP10, UROD, HECTD3, RAD54L, HPDL, PIK3R3, PTCH2, EIF2B3) 0 9 0 1.03427262062447 2077 0.303342313438398 0 0 0 -Inf LTS-025 chr1 46751759 46806242 54484 * c(LRRC41, NSUN4, UQCRH) 0.478 1 NA 1.01574433902051 63 0.480608736716781 3 3 0 -5.76523364176708 LTS-025 chr1 46806243 47614434 808192 * c(EFCAB14-AS1, MKNK1-AS1, DMBX1, KNCN, MOB3C, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, FAAH, CYP4X1, CYP4A22, TEX38, NSUN4, ATPAF1, FAAHP1, MKNK1, EFCAB14) 0.398289989100582 49 0.155066071061847 1.05435617891425 1138 0.388255325822894 4 2 2 -6.83496388205012 LTS-025 chr1 47614435 47615026 592 * CYP4A22 0.067 1 NA 0.913768738686226 12 0.443579952480299 3 3 0 -5.76441170433829 LTS-025 chr1 47615027 47838765 223739 * c(LINC00853, PDZK1IP1, CMPK1, STIL, TAL1) 0.207567285466675 15 0.223689580828944 1.05559952599033 287 0.351077833686369 4 3 1 -6.79784979175725 LTS-025 chr1 47838766 47844017 5252 * CMPK1 0.471 1 NA 1.08921826228442 51 0.256958789707305 4 4 0 -5.76516724617952 LTS-025 chr1 47844018 49113384 1269367 * c(SLC5A9, FOXE3, FOXD2, TRABD2B, SKINT1L, CMPK1, SPATA6, FOXD2-AS1, AGBL4) 0.276048274304168 9 0.227750106720307 1.08910503288356 565 0.357983534479434 4 3 1 -6.82771016919676 LTS-025 chr1 49113385 49119102 5718 * AGBL4 0 1 NA 1.40639970925652 5 0.622413608463054 5 5 0 -5.76447272112618 LTS-025 chr1 49119103 51525613 2406511 * c(CDKN2C, FAF1, ELAVL4, DMRTA2, BEND5, AGBL4) 0.143142717987116 6 0.233579679481471 1.06301397025795 479 0.495766887486199 3 3 0 -6.94376405618116 LTS-025 chr1 51525614 51567775 42162 * character(0) NA 0 NA 1.292 1 NA NA NA NA NA LTS-025 chr1 51567776 52344414 776639 * c(MIR761, OSBPL9, EPS15, TTC39A, RNF11, C1orf185, NRDC) 0.23616515125369 11 0.15414880650026 1.4365701023099 831 0.382366808932786 5 4 1 -6.75549326268867 LTS-025 chr1 52344415 52375900 31486 * c(NRDC, RAB3B) 0 1 NA 1.59027674708963 51 0.624410348358557 5 5 0 -5.76448307955678 LTS-025 chr1 52375901 52385847 9947 * RAB3B 0 7 0 1.5634003086495 184 0.59290206473664 0 0 0 -Inf LTS-025 chr1 52385848 52398930 13083 * RAB3B NA 0 NA 0.498 1 NA NA NA NA NA LTS-025 chr1 52398931 52490153 91223 * c(TXNDC12, RAB3B) 0 2 0 1.08153030143977 46 1.02089119469264 0 0 0 -Inf LTS-025 chr1 52490154 52818188 328035 * c(KTI12, CC2D1B, TXNDC12, BTF3L4, ZFYVE9) 0.393 1 NA 1.09242261796532 396 0.291860248795119 4 4 0 -5.79918411544645 LTS-025 chr1 52818189 53377474 559286 * c(CC2D1B, ZCCHC11, GPX7, FAM159A, ZYG11A, ORC1, ECHDC2, COA7, ZYG11B, PRPF38A) 0.231589735398012 12 0.24371075441634 1.01926088034202 963 0.472943821676132 4 3 1 -6.79864288410312 LTS-025 chr1 53377475 53387379 9905 * ECHDC2 0.497 1 NA 1.00155925715991 19 0.315175770137667 3 3 0 -5.76464173683724 LTS-025 chr1 53387380 53544439 157060 * c(PODN, ECHDC2, SCP2) 0.459162560237249 15 0.0491959154324634 1.02786239600763 265 0.318502703260099 4 2 2 -8.32158838855392 LTS-025 chr1 53544440 53552869 8430 * c(PODN, SLC1A7) 0 1 NA 1.25910597441498 17 0.986751756731025 4 4 0 -5.76441200373717 LTS-025 chr1 53552870 54344282 791413 * c(LOC100507564, CPT2, GLIS1, SLC25A3P1, MAGOH, YIPF1, C1orf123, NDC1, DMRTB1, SLC1A7, LRP8) 0.269236223506302 13 0.234335640284811 1.08481288955864 684 0.357816834324511 4 3 1 -6.7953823093978 LTS-025 chr1 54344283 54371910 27628 * c(DIO1, YIPF1) 0 1 NA 1.07263808506751 43 0.403350245840375 3 3 0 -5.76615241409143 LTS-025 chr1 54371911 54610149 238239 * c(MIR4781, LRRC42, TCEANC2, DIO1, CDCP2, LDLRAD1, HSPB11, TMEM59) 0.0426500180329878 9 0.132666666666667 1.0093484490616 373 0.42508233940294 3 3 0 -6.73865732831989 LTS-025 chr1 54610150 54636977 26828 * CDCP2 0.494 1 NA 0.981256768214408 36 0.18427439856978 3 3 0 -5.76523602119497 LTS-025 chr1 54636978 55139741 502764 * c(MROH7-TTC4, SSBP3, ACOT11, FAM151A, MROH7, MRPL37, CYB5RL) 0.371393768100397 19 0.1762659971588 1.05714215187567 469 0.378784969913632 4 2 2 -6.78384691760959 LTS-025 chr1 55139742 55163601 23860 * c(MROH7-TTC4, MROH7) 0 1 NA 1.12134379777444 51 0.69277997695559 4 4 0 -5.76469021362599 LTS-025 chr1 55163602 55474205 310604 * c(MROH7-TTC4, LEXM, DHCR24, TMEM61, PARS2, MROH7, TTC22, TTC4, BSND) 0.0786241814973586 15 0.197764000768593 1.09823788486027 551 0.567141357825204 3 3 0 -6.77524040126325 LTS-025 chr1 55474206 55474325 120 * BSND 0.426 1 NA 0.888132415177894 5 0.336373750462191 3 3 0 -5.76441225521454 LTS-025 chr1 55474326 56961486 1487161 * c(LOC100507634, MIR4422, USP24, PCSK9, BSND, PLPP3) 0.300263519418881 11 0.215012600053621 1.06408830114068 565 0.427336498951905 3 2 1 -6.81737816780488 LTS-025 chr1 56961487 56961955 469 * PLPP3 0.493 1 NA 1.00880239072848 11 0.351444577293619 3 3 0 -5.76442109346405 LTS-025 chr1 56961956 57538105 576150 * c(DAB1, C1orf168, PRKAA2, C8A, C8B, PLPP3) 0.0855832935337082 9 0.203323497029843 1.08858361818122 591 0.371085252556456 4 4 0 -6.82069127553048 LTS-025 chr1 57538106 58939502 1401397 * DAB1 0.49 1 NA 1.13907343225137 21 0.254414013914703 4 4 0 -5.84889825111882 LTS-025 chr1 58939503 62261168 3321666 * c(LINC01135, MIR4711, PATJ, MYSM1, OMA1, C1orf87, CYP2J2, DAB1, JUN, TACSTD2, MGC34796, NFIA, HOOK1, FGGY, HSD52, TM2D1) 0.395911824813718 34 0.133023150786907 1.08714409954606 1139 0.441358266581849 4 2 2 -6.92136517326536 LTS-025 chr1 62261169 62267310 6142 * PATJ 0 1 NA 1.15068039778425 9 0.114923887856268 4 4 0 -5.76581925734795 LTS-025 chr1 62267311 62713293 445983 * c(PATJ, KANK4, L1TD1) 0.0725834431722837 10 0.194760280002537 1.08620528379811 334 0.322036950679564 4 4 0 -6.80675353460647 LTS-025 chr1 62713294 62732421 19128 * KANK4 0.455 1 NA 1.08133983136634 16 0.255462065024666 4 4 0 -5.76752997838324 LTS-025 chr1 62732422 64515379 1782958 * c(KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, ROR1, PGM1, USP1, DLEU2L, EFCAB7, ATG4C, DOCK7) 0.407102326299725 23 0.135340253397588 1.06610605720803 959 0.324971120202841 4 2 2 -6.9941021181865 LTS-025 chr1 64515380 64606125 90746 * ROR1 0 1 NA 1.05713558264544 25 0.545528337180267 3 3 0 -5.76688061935028 LTS-025 chr1 64606126 65234403 628278 * c(MIR4794, UBE2U, ROR1, RAVER2, CACHD1) 0.26155554842159 10 0.233842800948748 1.06419362815872 366 0.356971426662628 4 3 1 -6.79824995911154 LTS-025 chr1 65234404 65311214 76811 * c(JAK1, RAVER2) 0.494 1 NA 1.01433629989814 175 0.255897756034542 3 3 0 -5.76835569718686 LTS-025 chr1 65311215 67467486 2156272 * c(INSL5, MIR3117, MIR3671, TCTEX1D1, AK4, SLC35D1, JAK1, LEPR, MIR101-1, PDE4B, LEPROT, MIER1, WDR78, SGIP1, DNAJC6) 0.404840203258913 61 0.159941697027659 1.03243198020004 1589 0.374248132331815 3 2 1 -6.93922636845707 LTS-025 chr1 67467487 67468145 659 * SLC35D1 0 1 NA 0.904894976508619 15 0.378435274707389 3 3 0 -5.76441438617969 LTS-025 chr1 67468146 68940779 1472634 * c(GNG12-AS1, MIR1262, IL23R, GADD45A, SLC35D1, SERBP1, IL12RB2, C1orf141, DEPDC1, GNG12, RPE65, WLS, DIRAS3) 0.269925277857502 24 0.230171765572293 1.0279586896162 901 0.363227749412165 3 2 1 -6.82553498926284 LTS-025 chr1 68940780 68941207 428 * DEPDC1 0.467 1 NA 1.40673632085712 9 0.250238608354329 5 5 0 -5.76443888983945 LTS-025 chr1 68941208 75097499 6156292 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, ERICH3, LRRIQ3, CTH, NEGR1, MIR186, TNNI3K, PIN1P1, LRRC40, DEPDC1, PTGER3, LRRC7, ANKRD13C, FPGT, SRSF11, ZRANB2) 0.425912630616516 41 0.124231280181803 1.05857872717034 1909 0.287220539720369 3 2 1 -7.63274054868499 LTS-025 chr1 75097500 75230959 133460 * c(TYW3, ERICH3, CRYZ) 0 1 NA 1.00960843014317 143 0.283210518299663 3 3 0 -5.76932985045112 LTS-025 chr1 75230960 75716959 486000 * c(TYW3, SLC44A5, LHX8) 0.186595761422307 12 0.238135990560016 1.07481947072357 252 0.491468990211327 4 3 1 -6.81913319878757 LTS-025 chr1 75716960 76143443 426484 * SLC44A5 0.482 1 NA 1.10133241017953 47 0.424962737660174 4 4 0 -5.78306224400637 LTS-025 chr1 76143444 77099691 956248 * c(ASB17, SLC44A5, ST6GALNAC3, SNORD45B, SNORD45A, ACADM, MSH4, RABGGTB, SNORD45C) 0.397441408710804 27 0.147697696957704 1.10038448311721 483 0.451137429924842 4 2 2 -6.79366140797048 LTS-025 chr1 77099692 77333442 233751 * ST6GALNAC5 0 1 NA 1.08584334585513 25 0.998243665978736 4 4 0 -5.76675407501292 LTS-025 chr1 77333443 78414887 1081445 * c(PIGK, USP33, ZZZ3, AK5, MIGA1, ST6GALNAC5, FUBP1, NEXN) 0.105228402225236 14 0.207991718453055 1.04205965120316 806 0.367098712968689 3 3 0 -6.84932441996741 LTS-025 chr1 78414888 78604013 189126 * c(DNAJB4, GIPC2, FUBP1) 0.413 1 NA 0.98129758912604 245 0.266943380859708 3 3 0 -5.76718928905279 LTS-025 chr1 78604014 85039955 6435942 * c(MIR548AP, IFI44, IFI44L, SAMD13, CTBS, MGC27382, ADGRL2, GNG5, UOX, PRKACB, PTGFR, DNASE2B, ADGRL4, TTLL7, RPF1) 0.456667961348365 24 0.100471704503293 1.05954131270254 1274 0.308426917845886 4 2 2 -7.99467234040599 LTS-025 chr1 85039956 85040069 114 * CTBS 0.25 1 NA 0.614693828254655 3 0.403279472987819 2 2 0 -5.76441121727297 LTS-025 chr1 85040070 85417960 377891 * c(SSX2IP, CTBS, LPAR3, MCOLN2, LINC01555) 0.147165183028783 9 0.223202262533335 1.00917033649367 338 0.420371631416763 3 3 0 -6.88588588359003 LTS-025 chr1 85417961 85422061 4101 * MCOLN2 0.468 1 NA 0.833973716630356 9 0.247639410792745 3 3 0 -5.76499630250797 LTS-025 chr1 85422062 89322926 3900865 * c(LINC01364, MIR4423, CLCA1, WDR63, C1orf52, CLCA4, DDAH1, MCOLN2, COL24A1, GTF2B, LINC01140, CYR61, SH3GLB1, ZNHIT6, MCOLN3, PKN2, ODF2L, LOC646626, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.398963359835618 51 0.143750707415139 1.02476895550773 2097 0.301272468107052 3 2 1 -7.0487350195035 LTS-025 chr1 89322927 92940850 3617924 * c(GLMN, GBP4, GBP5, GBP6, HFM1, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, ZNF326, BTBD8, GTF2B, BARHL2, GBP7, C1orf146, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, BRDT, TGFBR3, LOC729930, RPAP2, CDC7, ZNF644, LRRC8C) 0.39584515826659 35 0.147745522760584 0.957811903552179 2407 0.293243793962312 3 2 1 -6.85712364775366 LTS-025 chr1 92940851 92941171 321 * GFI1 0 1 NA 1.31044015927307 7 0.597445873220806 4 4 0 -5.76441200270133 LTS-025 chr1 92941172 93603299 662128 * c(MTF2, GFI1, SNORA66, FAM69A, SNORD21, RPL5, EVI5) 0.145792593802133 9 0.225757859466976 0.944714642417402 439 0.351574118136373 3 3 0 -6.87304363506752 LTS-025 chr1 93603300 93604136 837 * MTF2 0.473 1 NA 1.12806732568484 17 0.137348071144297 4 4 0 -5.76462995961138 LTS-025 chr1 93604137 93826513 222377 * c(CCDC18-AS1, DR1, MTF2, CCDC18, TMED5) 0.400225947137575 9 0.209485083001153 0.97580393440317 334 0.237551712791935 3 2 1 -6.80250858463926 LTS-025 chr1 93826514 93826519 6 * DR1 NA 0 NA 0.9 1 NA NA NA NA NA LTS-025 chr1 93826520 93913868 87349 * c(DR1, FNBP1L) 0.085 1 NA 0.658490306922322 39 0.192910106116386 2 2 0 -5.7648595943203 LTS-025 chr1 93913869 93913894 26 * FNBP1L NA 0 NA 0.976 1 NA NA NA NA NA LTS-025 chr1 93913895 95367669 1453775 * c(MIR760, LOC100129046, CNN3, SLC44A3, F3, ABCA4, GCLM, DNTTIP2, FNBP1L, ABCD3, BCAR3, ARHGAP29) 0.427148824514787 35 0.0865033442788692 1.03006347547885 1212 0.311766902154009 4 2 2 -7.28048609502643 LTS-025 chr1 95367670 97272456 1904787 * c(TMEM56-RWDD3, CNN3, TMEM56, ALG14, RWDD3, FLJ31662, PTBP2, LOC729970) 0.406 1 NA 1.08273992010278 325 0.373705563315803 4 4 0 -5.90358539180978 LTS-025 chr1 97272457 100203693 2931237 * c(LOC100129620, MIR2682, DPYD-AS1, PLPPR5, DPYD, FRRS1, MIR137HG, MIR137, SNX7, PALMD, PTBP2, LOC729987, PLPPR4) 0.183630959767302 9 0.247456617971267 1.03609700810098 613 0.384858394254489 3 2 1 -7.04411072536715 LTS-025 chr1 100203694 100316589 112896 * c(AGL, FRRS1) 0.456 1 NA 0.900061829336339 27 0.128946122718376 3 3 0 -5.77251253452974 LTS-025 chr1 100316590 100575933 259344 * c(SASS6, AGL, SLC35A3, MFSD14A) 0.453816383804057 11 0.028122782740883 1.00335739234975 492 0.256658659528829 4 2 2 -9.96956463238399 LTS-025 chr1 100575934 100586016 10083 * SASS6 0 1 NA 1.0299016618903 11 0.402160280123598 3 3 0 -5.76471394367518 LTS-025 chr1 100586017 109805476 9219460 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, HENMT1, OLFM3, C1orf194, LRRC39, COL11A1, NBPF4, SLC30A7, DBT, FNDC7, SASS6, S1PR1, CELSR2, EXTL2, NTNG1, WDR47, CLCC1, AKNAD1, AMY2A, AMY2B, FAM102B, GPSM2, SLC25A24, DPH5, GPR88, TRMT13, PRPF38B, PRMT6, RNPC3, TMEM167B, KIAA1324, SARS, SPATA42, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, VCAM1, CDC14A, RTCA, DNAJA1P5) 0.28659654094505 56 0.214433992962082 1.02764554380963 3288 0.362859838875815 3 2 1 -7.06614034492184 LTS-025 chr1 109805477 109813719 8243 * CELSR2 0.464 1 NA 1.1028695044683 99 0.212348166863563 4 4 0 -5.76582301491577 LTS-025 chr1 109813720 109836842 23123 * c(CELSR2, MYBPHL, PSRC1) 0.45625712797163 12 0.0457403740494305 1.05425417897829 158 0.239360985474682 4 2 2 -8.39664825973412 LTS-025 chr1 109836843 109840237 3395 * MYBPHL 0 1 NA 1.06238331480073 23 0.130157475311434 3 3 0 -5.76617478188138 LTS-025 chr1 109840238 110949720 1109483 * c(LAMTOR5, AHCYL1, ATXN7L2, CSF1, UBL4B, ALX3, AMPD2, GNAI3, GNAT2, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PSMA5, AMIGO1, SORT1, RBM15, EPS8L3, GPR61, STRIP1, SLC16A4) 0.332523510581182 35 0.198643014120365 1.01391765422394 2208 0.304498885652538 3 2 1 -6.77268711699881 LTS-025 chr1 110949721 110949857 137 * LAMTOR5 0.409 1 NA 0.903492976446576 3 0.353577902778629 3 3 0 -5.76441122234396 LTS-025 chr1 110949858 111215046 265189 * c(LAMTOR5-AS1, LAMTOR5, KCNA2, KCNA3, KCNA10, CYMP, PROK1) 0.129213945717396 9 0.232779103682249 1.07510557207874 181 1.21045914009282 7 6 1 -6.79189894520844 LTS-025 chr1 111215047 111441829 226783 * c(KCNA3, CD53) 0.489 1 NA 0.986245407906819 97 0.313799711974685 3 3 0 -5.76743708599798 LTS-025 chr1 111441830 111862952 421123 * c(CEPT1, CHI3L2, DRAM2, CHIAP2, CHIA, LRIF1, DENND2D, CD53) 0.426908216515458 15 0.122409149984795 0.969248804373462 414 0.404314660502315 4 2 2 -6.95666084117162 LTS-025 chr1 111862953 111894249 31297 * c(PIFO, CHIA) 0 1 NA 0.967726343571963 49 0.23555750377569 3 3 0 -5.76467277522401 LTS-025 chr1 111894250 115438104 3543855 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, BCAS2, AP4B1, PHTF1, DDX20, PIFO, C1orf162, ADORA3, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, PGCP1, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, CTTNBP2NL, FAM212B, OLFML3, RAP1A, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, WNT2B, CSDE1, WDR77, SIKE1, CAPZA1, LRIG2) 0.289838448713137 66 0.212806028096963 1.01359390432914 3708 0.334692268757841 3 2 1 -6.85712886573014 LTS-025 chr1 115438105 115457284 19180 * SYCP1 0.488 1 NA 1.10437579973592 25 0.40751596287753 4 4 0 -5.7652815775881 LTS-025 chr1 115457285 116234505 777221 * c(TSPAN2, NGF, SYCP1, TSHB, VANGL1) 0.422591688734235 11 0.142465306781559 1.08177724454116 257 0.349791189709441 4 2 2 -6.885064504946 LTS-025 chr1 116234506 116235730 1225 * VANGL1 0 1 NA 1.3099761185527 27 0.444748054418265 4 4 0 -5.76442287414537 LTS-025 chr1 116235731 117552617 1316887 * c(MIR320B1, MAB21L3, IGSF3, ATP1A1, NHLH2, SLC22A15, PTGFRN, VANGL1, CASQ2, ATP1A1-AS1, CD2, CD101, CD58) 0.174265526440773 34 0.188120711142565 1.06679492879532 1183 0.64819990362261 4 3 1 -6.90685548033779 LTS-025 chr1 117552618 117617705 65088 * c(TTF2, CD101) 0.461 1 NA 0.955131818627823 103 0.274546983700933 3 3 0 -5.76452299089396 LTS-025 chr1 117617706 120267505 2649800 * c(MIR942, WARS2, WDR3, MAN1A2, HSD3BP4, SPAG17, PHGDH, HSD3B1, HSD3B2, HAO2, GDAP2, FAM46C, LINC00622, TBX15, VTCN1, TRIM45, TTF2, ZNF697) 0.272348080955079 28 0.219560335080681 1.02481018242576 1655 0.422504759814044 3 2 1 -6.83826223346322 LTS-025 chr1 120267506 120283101 15596 * PHGDH 0 1 NA 1.03373862801528 31 0.578820563872164 3 3 0 -5.7646560988283 LTS-025 chr1 120283102 120535418 252317 * c(ADAM30, PHGDH, HMGCS2, NBPF7, NOTCH2, REG4) 0.166827315386761 9 0.22310224362635 1.00349039060426 542 0.364784325451616 4 3 1 -6.89360678121213 LTS-025 chr1 120535419 120535421 3 * NOTCH2 0.331 1 NA 0.458 1 NA NA NA NA NA LTS-025 chr1 120535422 121311177 775756 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.29994540988802 15 0.0905482244573628 0.938804641654275 229 1.0236973675054 3 2 1 -6.79909376322451 LTS-025 chr1 121311178 121313547 2370 * EMBP1 NA 0 NA 1.06622652770252 17 0.275672559922306 3 NA NA -5.76470138984155 LTS-025 chr1 143912360 144851537 939178 * c(NBPF20, LOC653513, FAM72D, NA, PFN1P2, PDE4DIP) 0.457 1 NA 0.670664616788918 37 0.248737361035239 2 2 0 -5.77631182436052 LTS-025 chr1 144851538 144931392 79855 * c(NBPF20, LOC653513, PDE4DIP) 0.444653177321757 29 0.0685405385061951 0.997569419017341 325 0.402739677113353 4 2 2 -7.40979058512032 LTS-025 chr1 144931393 144931870 478 * c(NBPF20, LOC653513, PDE4DIP) 0.321 1 NA 0.815056505934198 11 0.265466861482661 3 3 0 -5.76449415001364 LTS-025 chr1 144931871 145284580 352710 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, SEC22B, PDE4DIP) 0.328245268116615 44 0.096624171116624 0.863000316131376 368 0.351372260092625 3 2 1 -6.74611424591729 LTS-025 chr1 145284581 145284883 303 * c(NBPF10, NBPF20, NOTCH2NL) 0.262 1 NA 1.88246984487222 11 2.72326429458872 6 6 0 -5.76441015892405 LTS-025 chr1 145284884 145475529 190646 * c(NBPF10, NBPF20, TXNIP, HFE2, ANKRD34A, NOTCH2NL, POLR3GL) 0.464 1 NA 0.991525684035646 253 0.21970254788897 3 3 0 -5.77084924595694 LTS-025 chr1 145475530 145586780 111251 * c(NBPF10, NBPF20, PIAS3, LIX1L, ANKRD35, NUDT17, ANKRD34A, ITGA10, PEX11B, RBM8A) 0.466249297878328 9 0.0233404750975163 0.993408665147235 643 0.266475470472829 4 2 2 -11.298853316815 LTS-025 chr1 145586781 145689134 102354 * c(NBPF10, NBPF20, POLR3C, NUDT17, RNF115) 0 1 NA 1.02713966024968 177 0.261677986303138 3 3 0 -5.77125982999394 LTS-025 chr1 145689135 146751875 1062741 * c(NBPF10, NBPF20, CD160, NBPF12, PDIA3P1, FMO5, PDZK1, PRKAB2, NBPF13P, GPR89A, NA, NA, NA, LOC728989, CHD1L) 0.28118084790286 10 0.228104167237495 1.06259871169803 567 0.388271985917593 3 2 1 -6.82224339523961 LTS-025 chr1 146751876 147091689 339814 * c(LINC00624, BCL9, NA, NA, NA, CHD1L) 0.435 1 NA 1.01430010052895 99 0.194432130658186 3 3 0 -5.79448619153325 LTS-025 chr1 147091690 150432796 3341107 * c(FCGR1CP, MIR5087, SF3B4, MTMR11, VPS45, CIART, FCGR1A, RPRD2, CA14, NBPF14, GJA5, GJA8, NBPF15, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, MRPS21, OTUD7B, LINC00869, BCL9, PPIAL4D, LOC645166, HIST2H3D, NA, NA, NA, NA, PPIAL4F, PPIAL4E, C1orf54, ANP32E, HIST2H2AC, HIST2H2BE, PRPF3, SV2A) 0.395263608105349 16 0.15912195270714 1.00618728610413 1567 0.466200846732229 3 2 1 -6.87275091183048 LTS-025 chr1 150432797 150437061 4265 * RPRD2 NA 0 NA 1.675 1 NA NA NA NA NA LTS-025 chr1 150437062 150445626 8565 * RPRD2 NA 0 NA 1.5699651008246 61 0.386879242960746 5 NA NA -5.7644332460842 LTS-025 chr1 150445627 151254041 808415 * c(MIR4257, TNFAIP8L2-SCNM1, FALEC, SEMA6C, MLLT11, GABPB2, BNIPL, CTSK, CTSS, ECM1, ENSA, RPRD2, TMOD4, CERS2, LYSMD1, ARNT, MCL1, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMD4, PRUNE1, VPS72, SCNM1, TNFAIP8L2, TARS2, PIP5K1A, HORMAD1, ANXA9, SETDB1) 0.395669562766401 49 0.151172652680197 0.977530002871379 2393 0.276168560189909 3 2 1 -6.85278691536199 LTS-025 chr1 151254042 151264691 10650 * c(PI4KB, ZNF687) 0 1 NA 1.08572165764674 127 0.307114229125392 4 4 0 -5.76554049969892 LTS-025 chr1 151264692 151397554 132863 * c(POGZ, PI4KB, PSMB4, RFX5, SELENBP1) 0.142882460382278 6 0.258198889747161 1.00591838215134 443 0.367525590206736 3 3 0 -6.8377249066814 LTS-025 chr1 151397555 151400246 2692 * POGZ NA 0 NA 1.26 1 NA NA NA NA NA LTS-025 chr1 151400247 151555928 155682 * c(POGZ, CGN, MIR554, TUFT1) 0.0896728042719308 7 0.203946421535517 1.08255677395974 271 0.402597907317069 3 3 0 -6.78638674105645 LTS-025 chr1 151555929 151668295 112367 * c(TUFT1, SNX27) 0.479 1 NA 1.02415289813319 97 0.29106399750627 3 3 0 -5.77009118574561 LTS-025 chr1 151668296 151747970 79675 * c(TDRKH, CELF3, RIIAD1, OAZ3, MRPL9, SNX27) 0.383374745018778 12 0.181230307185151 1.06087939366548 314 0.359907475705295 4 2 2 -6.74566658783819 LTS-025 chr1 151747971 151748663 693 * TDRKH 0 1 NA 1.18375802933388 9 1.7125555465444 4 4 0 -5.76441039323407 LTS-025 chr1 151748664 152551930 803267 * c(LOC100132111, C2CD4D, TDRKH, THEM4, TCHHL1, RPTN, FLG, LCE5A, THEM5, LINGO4, LCE3E, HRNR, FLG2, CRNN, CRCT1, RORC, S100A10, S100A11, TCHH, LCE3D) 0.219507062108277 21 0.244533666978014 1.08054861848553 1115 0.455046979977191 4 3 1 -6.79433476050802 LTS-025 chr1 152551931 152691943 140013 * c(LCE4A, LCE2B, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3D) 0.474 1 NA 1.07394972825575 95 0.400513242396336 3 3 0 -5.77352237310791 LTS-025 chr1 152691944 153395395 703452 * c(C1orf68, PGLYRP3, LELP1, SPRR4, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, IVL, LOR, SMCP, KPRP, LCE6A, PGLYRP4, PRR9, S100A8, S100A9, S100A12, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.375418002215697 34 0.177951777501278 1.10636632313851 700 0.483460129905514 4 2 2 -6.75586799932108 LTS-025 chr1 153395396 153395649 254 * S100A7A NA 0 NA 1.21177690703688 6 0.203367401517549 4 NA NA -5.76441150813551 LTS-025 chr1 153395650 153509892 114243 * c(S100A7A, S100A5, S100A6, S100A7, S100A7L2) 0.453 1 NA 0.95646724524076 57 0.226214331020157 3 3 0 -5.76475975452166 LTS-025 chr1 153509893 153743234 233342 * c(S100A16, SNAPIN, CHTOP, ILF2, NPR1, S100A14, S100A1, S100A2, S100A3, S100A4, S100A5, S100A13, INTS3) 0.454004833487738 21 0.0362678527467114 0.973985988754713 661 0.251293747698079 4 2 2 -9.10135850501244 LTS-025 chr1 153743235 153743289 55 * INTS3 0.366 1 NA 0.769949386972629 3 0.25784943927287 2 2 0 -5.76442492946644 LTS-025 chr1 153743290 154185033 441744 * c(MIR190B, JTB, SLC27A3, CREB3L4, CRTC2, C1orf43, SLC39A1, C1orf189, GATAD2B, RAB13, RPS27, INTS3, TPM3, NUP210L, DENND4B) 0.184302576378779 9 0.236416475737204 0.99371343137571 1147 0.285278928740592 4 3 1 -6.95105689920524 LTS-025 chr1 154185034 154186918 1885 * C1orf43 0.475 1 NA 0.891072876237707 9 0.134692241795881 3 3 0 -5.76459631615991 LTS-025 chr1 154186919 154426970 240052 * c(HAX1, C1orf43, IL6R, ATP8B2, AQP10, UBAP2L) 0.398082053561412 14 0.1690082903227 1.0343860518565 576 0.303031243541319 4 2 2 -6.80054216127307 LTS-025 chr1 154426971 154439539 12569 * IL6R 0 1 NA 0.974703692165632 45 0.29425792643993 3 3 0 -5.76451708029143 LTS-025 chr1 154439540 154948327 508788 * c(MIR4258, ADAR, PMVK, CHRNB2, CKS1B, TDRD10, SHE, IL6R, KCNN3, UBE2Q1, PBXIP1, SHC1, PYGO2) 0.195583454978095 9 0.232880930472587 1.02030869500067 1128 0.308916097348197 4 3 1 -6.89928714960005 LTS-025 chr1 154948328 154987526 39199 * c(CKS1B, ZBTB7B, LENEP, FLAD1) 0.496 1 NA 0.996366472130842 127 0.260153855672797 3 3 0 -5.76553993570753 LTS-025 chr1 154987527 155106697 119171 * c(LOC100505666, DCST2, DCST1, EFNA1, EFNA3, EFNA4, ZBTB7B, ADAM15) 0.46820125706142 16 0.0260381130908776 1.05273899869383 472 0.251631407228903 4 2 2 -10.8732805783474 LTS-025 chr1 155106698 155111231 4534 * c(EFNA1, SLC50A1) 0 1 NA 0.960980545463479 55 0.303922895812946 3 3 0 -5.76442295210223 LTS-025 chr1 155111232 155258707 147476 * c(SCAMP3, FAM189B, CLK2, KRTCAP2, GBA, GBAP1, MTX1, MUC1, DPM3, SLC50A1, HCN3, MIR92B, THBS3, TRIM46) 0.293158803708675 17 0.230733899444666 1.01645135967064 807 0.379525379706492 3 2 1 -6.75205584079032 LTS-025 chr1 155258708 155258752 45 * HCN3 0.464 1 NA 3.131 1 NA NA NA NA NA LTS-025 chr1 155258753 156777214 1518462 * c(MSTO2P, PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, TTC24, FDPS, KIAA0907, SYT11, SMG5, RUSC1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, VHLL, LMNA, MIR9-1, MEF2D, RRNAD1, PKLR, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, ASH1L, UBQLN4, RAB25, RHBG, HCN3, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SSR2, SCARNA4, SNORA80E, MIR555, CCT3, DAP3, MRPL24, PAQR6, ISG20L2, TMEM79, NA NA NA NA NA NA NA NA NA LTS-025 SH2D2A, ARHGEF2, MEX3A, SLC25A44) 0.402775606013814 92 0.143645125228499 1.01243565332394 3952 0.314239392822185 3 2 1 -6.93138382989061 LTS-025 NA NA NA NA LTS-025 chr1 156777215 156778969 1755 * SH2D2A NA 0 NA 1.31 1 NA NA NA NA NA LTS-025 chr1 156778970 156784982 6013 * SH2D2A 0.451 1 NA 1.11911569574968 27 0.289572708099975 4 4 0 -5.76483082233644 LTS-025 chr1 156784983 156814543 29561 * c(INSRR, NTRK1, SH2D2A) 0 1 NA 1.08934242255206 87 0.554880765082885 4 4 0 -5.76532246551261 LTS-025 chr1 156814544 157647946 833403 * c(FCRL3, LRRC71, ETV3, CYCSP52, INSRR, PEAR1, ETV3L, NTRK1, MIR765, FCRL5, FCRL4, ARHGEF11) 0.176140977053312 35 0.227251905539708 1.08124840900984 1190 0.466297671241663 4 3 1 -6.86205068061974 LTS-025 chr1 157647947 157648155 209 * FCRL3 0.451 1 NA 1.28031207990406 5 0.183387567735657 4 4 0 -5.76441485657424 LTS-025 chr1 157648156 158057633 409478 * c(FCRL1, FCRL3, KIRREL, FCRL2, CD5L) 0.296113847782573 16 0.222984295037416 1.07981704240783 384 0.502526948625509 4 3 1 -6.76301237793829 LTS-025 chr1 158057634 158065046 7413 * KIRREL 0 1 NA 1.28935143294771 48 0.462742387605927 4 4 0 -5.76444801414754 LTS-025 chr1 158065047 158300768 235722 * c(KIRREL, LOC646268, CD1A, CD1B, CD1C, CD1D) 0.139230296573691 12 0.215055524895034 1.1522630424311 304 0.490254761069889 5 4 1 -6.85609323839596 LTS-025 chr1 158300769 158389693 88925 * c(OR10T2, CD1B, CD1E) 0.48 1 NA 1.03776416266101 95 0.26178291699937 3 3 0 -5.77183755059503 LTS-025 chr1 158389694 158549511 159818 * c(OR6P1, OR10X1, OR10R2, OR10K2, OR10K1, OR6Y1) 0.468513276834158 17 0.0211948245625033 1.20877592380648 153 0.512813793369588 4 2 2 -11.826006945383 LTS-025 chr1 158549512 158576778 27267 * c(OR10X1, OR10Z1) 0 1 NA 1.12679458777131 21 1.42353311634585 4 4 0 -5.7644785463753 LTS-025 chr1 158576779 158631171 54393 * c(OR10Z1, SPTA1) 0.359257632248871 11 0.184590603523286 1.03132182620077 226 0.487767416647897 4 2 2 -6.7389765044358 LTS-025 chr1 158631172 158639499 8328 * SPTA1 0 1 NA 1.0116333862812 27 0.973306933841729 3 3 0 -5.76443765088014 LTS-025 chr1 158639500 159166231 526732 * c(CADM3-AS1, OR6K6, OR6N1, PYHIN1, IFI16, OR6K3, MNDA, CADM3, SPTA1, OR6N2, OR6K2, AIM2) 0.10707039351118 12 0.178667542964834 1.04999692098028 482 0.502861319154402 3 3 0 -6.84280976757423 LTS-025 chr1 159166232 159175354 9123 * c(CADM3-AS1, ACKR1, CADM3) 0.499 1 NA 1.08069943852746 91 0.290405553232002 4 4 0 -5.76557215650554 LTS-025 chr1 159175355 159898100 722746 * c(OR10J5, CRP, FCER1A, ACKR1, CFAP45, OR10J1, C1orf204, APCS, FCRL6, VSIG8, OR10J3, DUSP23, SLAMF8, IGSF9, TAGLN2) 0.383047641855997 15 0.162321462360518 1.07552475772788 620 0.440957828321268 4 2 2 -6.7804542273997 LTS-025 chr1 159898101 159904147 6047 * IGSF9 0 1 NA 1.09839522516319 63 0.240822825713296 4 4 0 -5.76527479126008 LTS-025 chr1 159904148 160094145 189998 * c(LINC01133, KCNJ9, KCNJ10, ATP1A2, IGSF9, SLAMF9, PIGM, IGSF8) 0.196182042815494 11 0.237608271971097 1.05097953437134 469 0.707589424715853 5 4 1 -6.76926179605087 LTS-025 chr1 160094146 160111701 17556 * ATP1A2 0.475 1 NA 1.08324854475097 103 0.231129567607984 4 4 0 -5.76781604854687 LTS-025 chr1 160111702 160128799 17098 * c(ATP1A2, ATP1A4) 0.339074985576215 5 0.203995833290781 1.07183739356977 71 0.391027679682227 3 2 1 -6.73531048302081 LTS-025 chr1 160128800 160151450 22651 * ATP1A4 0.445749092142687 6 0.03348233365025 0.987821119189251 95 0.369912979083007 4 2 2 -8.91616925654512 LTS-025 chr1 160151451 160186989 35539 * c(ATP1A4, DCAF8, CASQ1, PEA15) 0 1 NA 1.07526445266827 179 0.397282311873244 3 3 0 -5.76680724090472 LTS-025 chr1 160186990 160771924 584935 * c(SLAMF6, COPA, NCSTN, LY9, SUMO1P3, NHLH1, DCAF8, VANGL2, SLAMF7, PEX19, SLAMF1, CD84, CD48) 0.0800867229792604 23 0.165856788550546 1.01704611059233 1169 0.451650617565535 3 3 0 -6.78647240645736 LTS-025 chr1 160771925 160786670 14746 * LY9 0.5 1 NA 0.971749800100902 31 0.22210594197897 3 3 0 -5.76459386593222 LTS-025 chr1 160786671 161933457 1146787 * c(TSTD1, MIR5187, DUSP12, KLHDC9, FCRLB, ITLN2, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ATF6, ARHGAP30, CFAP126, USP21, HSPA6, HSPA7, APOA2, LY9, MPZ, NDUFS2, NIT1, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SDHC, RPL31P11, PCP4L1, USF1, NECTIN4, TOMM40L, FCRLA, B4GALT3, FCGR2C, DEDD, ADAMTS4, NR1I3) 0.377666055465464 83 0.180616611280219 0.998162438246392 2299 0.333992535602343 3 2 1 -6.79552801460166 LTS-025 chr1 161933458 162313735 380278 * c(MIR4654, ATF6, OLFML2B, MIR556, NOS1AP) 0.392973122449195 6 0.195106808355492 1.12834838083302 154 0.340898660327656 4 2 2 -6.7586202294725 LTS-025 chr1 162313736 162334189 20454 * NOS1AP 0 1 NA 1.15551865303361 45 0.689497663725431 4 4 0 -5.76452560375198 LTS-025 chr1 162334190 162731245 397056 * c(SH2D1B, UHMK1, C1orf111, C1orf226, DDR2, UAP1, NOS1AP) 0.230019315210278 18 0.242753627221946 1.09405298527789 602 0.400670572724509 4 3 1 -6.76662516806881 LTS-025 chr1 162731246 162743242 11997 * DDR2 0.443 1 NA 1.02166323547085 33 0.295233712634173 3 3 0 -5.76496664059425 LTS-025 chr1 162743243 163112204 368962 * c(CCDC190, DDR2, HSD17B7, RGS4, RGS5) 0.386991896674233 12 0.183089707272394 1.03436669373814 266 0.329749619717427 4 2 2 -6.80276928941919 LTS-025 chr1 163112205 163116554 4350 * RGS5 0 1 NA 1.23830518018987 95 0.337822804192486 4 4 0 -5.76441025680299 LTS-025 chr1 163116555 164559686 1443132 * c(PBX1, NUF2, RGS5) 0.324609226724311 4 0.227779132787298 1.01941347359459 138 0.311006346021136 3 2 1 -6.78998700059554 LTS-025 chr1 164559687 166135450 1575764 * c(MIR921, MIR3658, LOC100505795, FAM78B, ALDH9A1, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, PBX1, TMCO1, RXRG, UCK2) 0.200893438992384 20 0.177033597762804 1.50282518101293 633 0.598076381062602 5 4 1 -6.73843203491484 LTS-025 chr1 166135451 166135597 147 * FAM78B NA 0 NA 0.815 1 NA NA NA NA NA LTS-025 chr1 166135598 167086820 951223 * c(GPA33, FMO9P, TADA1, FAM78B, ILDR2, POGK, MAEL, DUSP27) 0.261718498213974 17 0.224503864764323 1.0665362822322 457 0.350840008675734 4 3 1 -6.83167328517247 LTS-025 chr1 167086821 167095163 8343 * DUSP27 0.496 1 NA 0.962382651101598 9 0.407038218243829 3 3 0 -5.76442518728923 LTS-025 chr1 167095164 167393128 297965 * c(POU2F1, DUSP27) 0.467883574656893 11 0.0368919799118749 1.00477688196571 371 0.352989604276152 4 2 2 -9.48671196968198 LTS-025 chr1 167393129 167393635 507 * POU2F1 0.452 1 NA 1.2130177820408 11 0.912426694440311 4 4 0 -5.7644102570579 LTS-025 chr1 167393636 167674390 280755 * c(POU2F1, CREG1, CD247, RCSD1) 0.072482427241929 9 0.189487320009663 1.06038778333862 235 0.569009545736056 3 3 0 -6.76323129799987 LTS-025 chr1 167674391 167806642 132252 * c(ADCY10, MPZL1, RCSD1) 0.478 1 NA 1.0338005186806 207 0.219287311970223 3 3 0 -5.77892680122323 LTS-025 chr1 167806643 170706356 2899714 * c(MIR3119-1, MIR3119-2, LOC100505918, SLC19A2, METTL11B, DPT, F5, KIFAP3, GPR161, MPC2, TIPRL, LINC01142, NME7, SFT2D2, ATP1B1, PRRX1, C1orf112, ADCY10, DCAF6, SCYL3, CCDC181, XCL1, SELE, SELL, SELP, XCL2, MIR557, LINC00626, ANKRD36BP1, BLZF1, TBX19, METTL18, GORAB) 0.381233673634681 50 0.172124819446202 1.0286390395077 2046 0.325557570391611 3 2 1 -6.91241539370366 LTS-025 chr1 170706357 170916646 210290 * c(PRRX1, MROH9) 0.485 1 NA 1.23329455281019 55 0.313264501358593 4 4 0 -5.76441404163983 LTS-025 chr1 170916647 171540444 623798 * c(MIR1295A, MIR1295B, PRRC2C, FMO1, FMO2, FMO3, FMO4, FMO6P, TOP1P1, MROH9) 0.151722020542142 9 0.222919267897596 1.05015855558512 655 0.319939800667371 3 3 0 -6.93553240328841 LTS-025 chr1 171540445 171548617 8173 * PRRC2C 0.495 1 NA 1.02114006460847 17 0.187300383938553 3 3 0 -5.76534028479643 LTS-025 chr1 171548618 173516903 1968286 * c(MIR3120, LOC100506023, DNM3OS, PRRC2C, DNM3, SLC9C2, FASLG, MYOC, SUCO, METTL13, PIGC, TNFSF4, VAMP4, TNFSF18, C1orf105, PRDX6) 0.416326666929951 30 0.143450696404202 1.01835146473392 1290 0.321305030038228 3 2 1 -7.01236588204323 LTS-025 chr1 173516904 173604892 87989 * c(SLC9C2, ANKRD45, LOC730159) 0 1 NA 1.01588012616333 83 0.623718251255926 3 3 0 -5.76520256136927 LTS-025 chr1 173604893 175335130 1730238 * c(GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, ANKRD45, SERPINC1, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNR, LOC730159, ZBTB37, CENPL, GPR52, KIAA0040, RABGAP1L) 0.115617619120127 13 0.225391824073045 1.01544280075798 1355 0.448363123348917 3 3 0 -6.83762756512514 LTS-025 chr1 175335131 175335234 104 * TNR 0.493 1 NA 1.21541724414953 3 0.856759203821782 4 4 0 -5.76441015714375 LTS-025 chr1 175335235 176524652 1189418 * c(PAPPA2, RFWD2, SCARNA3, TNR) 0.309402831484856 12 0.201126072327028 1.08855276719874 229 1.3934407880748 3 2 1 -6.74718421109961 LTS-025 chr1 176524653 176813997 289345 * PAPPA2 0.298325569837731 9 0.204504278683846 1.18094915144648 249 0.733172294366817 4 3 1 -6.75051615087995 LTS-025 chr1 176813998 176830684 16687 * ASTN1 0 1 NA 1.10575037885355 37 0.671237392162145 4 4 0 -5.76468344623877 LTS-025 chr1 176830685 177899717 1069033 * c(ASTN1, MIR488, BRINP2, SEC16B) 0.0823804984941767 13 0.193729788027631 1.14031773616972 315 0.570711095497814 4 4 0 -6.79253227351495 LTS-025 chr1 177899718 177901713 1996 * SEC16B 0.467 1 NA 1.26390171254859 5 0.971842939985675 4 4 0 -5.76441079181788 LTS-025 chr1 177901714 178802676 900963 * c(RASAL2-AS1, MIR4424, C1orf220, RALGPS2, LOC730102, TEX35, SEC16B, RASAL2) 0.274290178757642 21 0.22763169919014 1.14071995808511 573 0.520873084038926 4 3 1 -6.74690179587146 LTS-025 chr1 178802677 178854330 51654 * c(RALGPS2, ANGPTL1) 0.444 1 NA 1.22303885074765 89 0.465683223783267 4 4 0 -5.76442469469499 LTS-025 chr1 178854331 179063432 209102 * c(RALGPS2, TOR3A, FAM20B) 0.340678567014496 5 0.195126369309737 1.1017134125862 310 0.253924011347867 4 2 2 -6.77056055060072 LTS-025 chr1 179063433 179064042 610 * TOR3A NA 0 NA 0.943 1 NA NA NA NA NA LTS-025 chr1 179064043 179561527 497485 * c(AXDND1, TDRD5, ABL2, TOR3A, SOAT1, NPHS2) 0.432250131876983 21 0.106926276337618 1.00055412978515 655 0.274329181104529 4 2 2 -7.11098274808495 LTS-025 chr1 179561528 179561925 398 * TDRD5 0 1 NA 1.11027302821117 9 0.9697955683774 4 4 0 -5.7644130249175 LTS-025 chr1 179561926 179599525 37600 * TDRD5 0 1 NA 0.998063134396325 30 0.293281074237236 3 3 0 -5.76531453218286 LTS-025 chr1 179599526 179599936 411 * TDRD5 NA 0 NA 1.617 1 NA NA NA NA NA LTS-025 chr1 179599937 179783033 183097 * c(FAM163A, TDRD5) 0.38319834744646 2 0.0586898628384834 1.48768624061366 73 0.261769291744575 4 2 2 -6.82569005301245 LTS-025 chr1 179783034 179783037 4 * FAM163A NA 0 NA 1.026 1 NA NA NA NA NA LTS-025 chr1 179783038 180905009 1121972 * c(MIR3121, LHX4-AS1, FAM163A, TOR1AIP2, FLJ23867, TOR1AIP1, QSOX1, KIAA1614, ACBD6, LHX4, XPR1, CEP350) 0.0723090171546847 18 0.169951050238368 1.03195635200397 1306 0.375915720548716 3 3 0 -6.80124761960303 LTS-025 chr1 180905010 180915596 10587 * KIAA1614 0.424 1 NA 1.0763533259802 59 0.268200668307185 3 3 0 -5.76600101282137 LTS-025 chr1 180915597 181059893 144297 * c(STX6, MR1, IER5, KIAA1614) 0.391811567987046 21 0.137374306185691 0.998158939978984 444 0.300777277355325 4 2 2 -6.79359984407206 LTS-025 chr1 181059894 181688932 629039 * c(GM140, IER5, CACNA1E) 0 1 NA 1.0779813789982 67 0.348165666130239 3 3 0 -5.82124945063129 LTS-025 chr1 181688933 182025022 336090 * c(ZNF648, CACNA1E) 0.0163511430201982 15 0.110767323701532 1.13843296185242 466 0.764245307714817 4 4 0 -6.74198075106608 LTS-025 chr1 182025023 182350909 325887 * c(ZNF648, GLUL) 0.436 1 NA 1.13882382933959 51 0.303252988281997 4 4 0 -5.77847786677092 LTS-025 chr1 182350910 182517940 167031 * c(TEDDM1, GLUL, RGSL1, LINC00272) 0.286333403491663 12 0.204235158579516 1.01436475735194 253 0.577534806587557 4 3 1 -6.75183612637192 LTS-025 chr1 182517941 182522552 4612 * RGSL1 0.426 1 NA 0.99982245880807 9 0.529581202460964 3 3 0 -5.7644462265561 LTS-025 chr1 182522553 184801065 2278513 * c(ARPC5, TSEN15, FAM129A, DHX9, NMNAT2, COLGALT2, RGL1, LOC284648, SMG7-AS1, RGSL1, LAMC1, LAMC2, APOBEC4, NCF2, RGS16, RNASEL, EDEM3, NPL, C1orf21, SHCBP1L, RGS8, SMG7) 0.454259248851029 67 0.0847836099467568 1.03984910691236 2430 0.280527210148062 4 2 2 -7.76874076273437 LTS-025 chr1 184801066 185964152 1163087 * c(GS1-279B7.1, IVNS1ABP, FAM129A, SWT1, RNF2, TRMT1L, HMCN1) 0 1 NA 1.02162822799839 581 0.295397233202717 3 3 0 -5.8177893827795 LTS-025 chr1 185964153 186957996 993844 * c(MIR548F1, RNU6-72P, PRG4, OCLM, PDC, PLA2G4A, C1orf27, PTGS2, TPR, HMCN1) 0.392627036776409 27 0.168409333778457 1.06656962856942 1163 0.288665698903526 4 2 2 -6.8961578657481 LTS-025 chr1 186957997 190067721 3109725 * c(BRINP3, PLA2G4A) 0 1 NA 1.04787994550397 26 1.0882122502244 3 3 0 -5.78254093372261 LTS-025 chr1 190067722 196451505 6383784 * c(MIR1278, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.227320460227155 13 0.24242577505343 1.01642601562042 857 0.395296855868584 3 2 1 -6.98086847488463 LTS-025 chr1 196451506 196654324 202819 * c(MIR4735, CFH, KCNT2) 0.375 1 NA 1.05777695606181 49 0.171404978535242 3 3 0 -5.8204236356843 LTS-025 chr1 196654325 196978615 324291 * c(CFHR4, CFHR3, CFH, CFHR1, CFHR2, CFHR5) 0.423229544220665 22 0.107398366332589 1.10176418329886 404 0.515090280844375 4 2 2 -6.89498797427586 LTS-025 chr1 196978616 197073910 95295 * c(F13B, ASPM, CFHR5) 0 1 NA 1.09968979626205 195 0.350644824377613 4 4 0 -5.77070466331657 LTS-025 chr1 197073911 198290010 1216100 * c(NEK7, DENND1B, CRB1, ASPM, ZBTB41, C1orf53, LHX9) 0.234568182929025 13 0.234851180374034 1.0131364280152 993 0.357371017424406 3 2 1 -6.86170336047764 LTS-025 chr1 198290011 198663661 373651 * c(ATP6V1G3, NEK7, PTPRC) 0.414 1 NA 1.00641980640999 87 0.437583893052485 3 3 0 -5.7696714697794 LTS-025 chr1 198663662 200311910 1648249 * c(MIR181A1HG, NR5A2, MIR181B1, MIR181A1, LINC00862, PTPRC) 0.360319473424271 16 0.188119897494479 1.01719056360107 350 0.354079533318235 3 2 1 -6.79567508566458 LTS-025 chr1 200311911 200528602 216692 * c(ZNF281, LINC00862, KIF14) 0 1 NA 1.07328386396881 149 0.332568792331008 3 3 0 -5.78463455225272 LTS-025 chr1 200528603 201031603 503001 * c(KIF21B, CAMSAP2, GPR25, C1orf106, CACNA1S, DDX59, KIF14) 0.0241334982387507 19 0.150296704605273 1.08406920801404 907 0.571140558823159 4 4 0 -6.7491950749866 LTS-025 chr1 201031604 201079344 47741 * CACNA1S 0.492 1 NA 1.10997011610646 99 0.271768654951337 4 4 0 -5.76885527618738 LTS-025 chr1 201079345 201181217 101873 * c(TMEM9, ASCL5, CACNA1S, IGFN1) 0.431579566444216 13 0.0524735586650492 1.09487059371309 209 0.33501773329923 4 2 2 -7.50440468021528 LTS-025 chr1 201181218 201182257 1040 * IGFN1 0 1 NA 1.26218307453324 22 0.785668277873775 4 4 0 -5.76441059761108 LTS-025 chr1 201182258 201790321 608064 * c(MIR1231, MIR5191, CSRP1, PHLDA3, RPS10P7, LAD1, PKP1, TNNI1, TNNT2, NAV1, IGFN1) 0.230873841823553 19 0.240321653364867 1.10007250899158 720 0.380551057052328 4 3 1 -6.77816879131292 LTS-025 chr1 201790322 201791200 879 * NAV1 0.5 1 NA 1.08199316647649 19 0.396452212410457 4 4 0 -5.76446909044602 LTS-025 chr1 201791201 201986037 194837 * c(TIMM17A, SHISA4, ELF3, LMOD1, IPO9, RNPEP, NAV1) 0.440910763590076 11 0.0495749203456014 1.08312677585681 778 0.296769699057536 4 2 2 -7.82407855383709 LTS-025 chr1 201986038 202091883 105846 * ELF3 0 1 NA 0.967531596246682 9 0.601730721428706 3 3 0 -5.76454430125642 LTS-025 chr1 202091884 203023214 931331 * c(PCAT6, KDM5B, ARL8A, SYT2, LOC148709, PTPRVP, UBE2T, NA, PPP1R12B, ADIPOR1, CYB5R1, PTPN7, RABIF, KLHL12, LGR6, MGAT4EP, PPFIA4, TMEM183A, GPR37L1) 0.125867033498355 17 0.224954505204418 1.03968237592445 1591 0.396312017259098 3 3 0 -6.86346121384007 LTS-025 chr1 203023215 203025209 1995 * PPFIA4 0.465 1 NA 1.15947667920471 9 0.136328748904176 4 4 0 -5.76466939204566 LTS-025 chr1 203025210 203188761 163552 * c(CHI3L1, CHIT1, ADORA1, MYBPH, MYOG, PPFIA4) 0.249823283140255 14 0.229738264835596 1.12293284723577 404 0.603322217903154 4 3 1 -6.73777964305671 LTS-025 chr1 203188762 203276998 88237 * c(CHIT1, LINC01136, BTG2) 0.485 1 NA 1.001254342945 65 0.248826657109847 3 3 0 -5.76768662141493 LTS-025 chr1 203276999 203832964 555966 * c(ZBED6, FMOD, OPTC, ATP2B4, LAX1, PRELP, SNRPE, SNORA77, BTG2, LINC00260, ZC3H11A) 0.445428148210889 30 0.0896618487788244 1.00165873876309 788 0.272164471639256 4 2 2 -7.33781478662354 LTS-025 chr1 203832965 204125842 292878 * c(LINC00303, ETNK2, REN, SNRPE, SOX13) 0 1 NA 1.11053164476953 249 0.313465428473027 4 4 0 -5.78466136671219 LTS-025 chr1 204125843 204590044 464202 * c(LRRN2, LINC00628, GOLT1A, PLEKHA6, KISS1, MDM4, PIK3C2B, REN, PPP1R15B) 0.309008079336684 25 0.219609137636241 1.05240751440554 861 0.367562635941846 3 2 1 -6.76422195777394 LTS-025 chr1 204590045 204591177 1133 * c(LRRN2, MDM4) 0 1 NA 1.06140197647261 25 0.539805134593339 3 3 0 -5.7644438426199 LTS-025 chr1 204591178 205043793 452616 * c(LRRN2, NFASC, MDM4, CNTN2) 0.178198717264272 17 0.237985525387822 1.10717861212916 496 0.542472120476976 4 3 1 -6.82114035405099 LTS-025 chr1 205043794 205044339 546 * CNTN2 0.492 1 NA 1.30801774161539 11 0.227260683317239 4 4 0 -5.76443076343224 LTS-025 chr1 205044340 205115150 70811 * c(DSTYK, TMEM81, RBBP5, CNTN2) 0.471296583809174 11 0.0274375323565765 1.04182713242699 277 0.259309440820166 4 2 2 -10.7657554497797 LTS-025 chr1 205115151 205115435 285 * DSTYK 0 1 NA 1.05202208106086 9 0.487762949027952 3 3 0 -5.76441901968672 LTS-025 chr1 205115436 205272860 157425 * c(DSTYK, NUAK2, TMCC2) 0.181258477091696 11 0.23460768025869 1.0409702767566 243 0.386293906077481 4 3 1 -6.82530736149411 LTS-025 chr1 205272861 205290794 17934 * NUAK2 0.479 1 NA 0.995859086450342 47 0.32469687564647 3 3 0 -5.76473609151364 LTS-025 chr1 205290795 205588653 297859 * c(MFSD4A, ELK4, LEMD1-AS1, LOC284578, MIR135B, CDK18, KLHDC8A, NUAK2, LEMD1) 0.313278047132662 9 0.202731965905725 1.07345604330114 487 0.379282641937226 3 2 1 -6.75860764024417 LTS-025 chr1 205588654 205589158 505 * ELK4 0 1 NA 1.28181559402725 11 0.915831256787565 4 4 0 -5.76441062410672 LTS-025 chr1 205589159 205882454 293296 * c(SLC26A9, PM20D1, ELK4, SLC41A1, LOC284581, NUCKS1, SLC45A3, RAB29) 0.230316619127012 22 0.241904407616402 1.03805517730076 550 0.447734729293879 4 3 1 -6.77114498480219 LTS-025 chr1 205882455 205882641 187 * SLC26A9 0 1 NA 1.41081949626025 7 1.53811896561383 5 5 0 -5.76441044366064 LTS-025 chr1 205882642 206332107 449466 * c(SLC26A9, CTSE, C1orf186, AVPR1B, FAM72A) 0.0502062376282487 7 0.183690733882484 1.12386027982534 286 0.563264015000975 4 4 0 -6.74938281801528 LTS-025 chr1 206332108 206515331 183224 * character(0) NA 0 NA 0.643 1 NA NA NA NA NA LTS-025 chr1 206515332 211922603 5407272 * c(MIR4260, IL24, CR1, CR1L, CR2, C1orf74, LOC148696, CD55, EIF2D, SRGAP2, SYT14, DIEXF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, NEK2, G0S2, IL20, PFKFB2, PIGR, PLXNA2, YOD1, HHAT, RCOR3, SERTAD4, CAMK1G, SERTAD4-AS1, MIR205HG, SRGAP2C, TRAF5, C4BPA, C4BPB, SLC30A1, C1orf116, TRAF3IP3, RASSF5, FCAMR, DYRK3, LINC00467, FCMR, MAPKAPK2, CD34, IKBKE, LPGAT1) 0.0690527555135598 104 0.0642244528182672 0.605545014655419 4357 0.237932439530037 2 2 0 -7.02644684572507 LTS-025 chr1 211922604 211956707 34104 * LPGAT1 NA 0 NA 0.578057834584469 29 0.116583349325285 2 NA NA -5.78337328486544 LTS-025 chr1 211956708 211956713 6 * LPGAT1 NA 0 NA 0.891 1 NA NA NA NA NA LTS-025 chr1 211956714 212277107 320394 * c(MIR3122, INTS7, DTL, LPGAT1) 0.47 1 NA 0.984925557075356 245 0.183926925157552 3 3 0 -5.77613899246245 LTS-025 chr1 212277108 213447589 1170482 * c(TATDN3, SPATA45, FAM71A, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, DTL, TMEM206, PPP2R5A, BATF3, FLVCR1-AS1, SNORA16B, VASH2, ANGEL2) 0.213473710214456 14 0.224153793358317 1.01174408691904 1019 0.317835785152502 3 2 1 -6.92752276204366 LTS-025 chr1 213447590 217782347 4334758 * c(LINC00538, CENPF, ESRRG, KCNK2, KCTD3, GPATCH2, PROX1, SMYD2, PTPN14, USH2A) 0.228582989923994 27 0.235971212450615 1.12054991133302 1568 0.344359296786343 4 3 1 -6.94855946607792 LTS-025 chr1 217782348 217804325 21978 * GPATCH2 0.495 1 NA 1.09189091997512 59 0.293338462421729 4 4 0 -5.76674733653942 LTS-025 chr1 217804326 219783491 1979166 * c(LINC00210, LYPLAL1, SPATA17, RRP15, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.441590672607412 9 0.0456265030193831 1.12904714544681 448 0.354737829175106 4 2 2 -8.05370496231528 LTS-025 chr1 219783492 219783711 220 * character(0) NA 0 NA 1.023 1 NA NA NA NA NA LTS-025 chr1 219783712 220142023 358312 * c(EPRS, RNU5F-1, SLC30A10) 0.437 1 NA 0.850209428278407 85 0.442932339554214 3 3 0 -5.77570213154967 LTS-025 chr1 220142024 220142241 218 * c(EPRS, RNU5F-1) 0 1 NA 1.52099073535217 5 1.23959961277825 5 5 0 -5.7644101374482 LTS-025 chr1 220142242 220870573 728332 * c(BPNT1, EPRS, RAB3GAP2, RNU5F-1, MIR194-1, MIR215, MARK1, IARS2, SNORA36B, AURKAPS1, C1orf115) 0.238977885967346 9 0.244559865427216 1.0508347290277 763 0.316597968487523 4 3 1 -6.8514004530022 LTS-025 chr1 220870574 220970028 99455 * c(MARC2, MARC1, C1orf115) 0.462 1 NA 1.06451784675691 123 0.275567973919382 3 3 0 -5.77631115532112 LTS-025 chr1 220970029 223853481 2883453 * c(DUSP10, BROX, CCDC185, HLX, MIA3, CAPN8, C1orf140, FAM177B, SUSD4, MARC1, AIDA, TLR5, HHIPL2, DISP1, TAF1A) 0.255681881764637 26 0.230049867503682 1.06255839859303 1321 0.42844028440141 3 2 1 -6.93092716521578 LTS-025 chr1 223853482 223905532 52051 * CAPN2 0.461 1 NA 1.07802162426257 23 0.269533897198721 3 3 0 -5.77232646961066 LTS-025 chr1 223905533 224544642 639110 * c(MIR320B2, FBXO28, CNIH4, NVL, TP53BP2, CAPN2, DEGS1) 0.418092316379938 11 0.140192919027512 0.969321750386544 599 0.242736963741691 3 2 1 -6.96592511295534 LTS-025 chr1 224544643 224559013 14371 * CNIH4 0 1 NA 1.01231924538492 13 0.489740852455768 3 3 0 -5.76460121858312 LTS-025 chr1 224559014 225477728 918715 * c(MIR4742, DNAH14, CNIH3, CNIH4, WDR26) 0.076753553501179 11 0.186716946691558 1.02422540042139 635 0.395418510278912 3 3 0 -6.78734756051732 LTS-025 chr1 225477729 225565015 87287 * DNAH14 0.412 1 NA 0.967407473578712 135 0.231753387493483 3 3 0 -5.76514903964369 LTS-025 chr1 225565016 226026406 461391 * c(DNAH14, EPHX1, LBR, ENAH, SRP9) 0.41543257599602 11 0.143014176029702 0.990151290012749 409 0.294922246414336 3 2 1 -6.947303861123 LTS-025 chr1 226026407 226026597 191 * EPHX1 0 1 NA 1.29649222300465 5 2.14367775096911 4 4 0 -5.76441019235747 LTS-025 chr1 226026598 226589871 563274 * c(LEFTY1, PARP1, SDE2, EPHX1, LIN9, PYCR2, H3F3A, H3F3AP4, ACBD3, LEFTY2, MIXL1, TMEM63A) 0.287265634835343 12 0.2156665495761 1.0128727514613 835 0.330212483692883 3 2 1 -6.77334513430056 LTS-025 chr1 226589872 226790103 200232 * c(PARP1, STUM) 0.392 1 NA 0.951929046549272 44 0.297227437456852 3 3 0 -5.76458686957598 LTS-025 chr1 226790104 227946742 1156639 * c(NA, SNAP47, ZNF678, ITPKB, STUM, ZNF847P, PSEN2, COQ8A, JMJD4, CDC42BPA) 0.419572249265821 37 0.151672784749386 1.01646882762464 947 0.320532571319371 3 2 1 -6.97441066706586 LTS-025 chr1 227946743 227946841 99 * SNAP47 NA 0 NA 1.123 1 NA NA NA NA NA LTS-025 chr1 227946842 228003967 57126 * c(SNAP47, PRSS38) 0.478331981564832 2 0.00707106781186548 1.15509598789203 72 0.174373068277564 4 2 2 -18.4334890767608 LTS-025 chr1 228003968 228108056 104089 * PRSS38 0 1 NA 1.09008498534761 57 0.402310601619493 4 4 0 -5.77045015232594 LTS-025 chr1 228108057 228698404 590348 * c(MIR3620, MIR4666A, MIR5008, MRPL55, HIST3H2BB, RNF187, IBA57, GUK1, ARF1, TRIM17, GJC2, C1orf145, WNT9A, C1orf35, TRIM11, HIST3H3, OBSCN, WNT3A, HIST3H2A) 0.0460771822419852 23 0.161074934075268 1.09839324317649 1599 0.464971406376061 4 4 0 -6.76313345190166 LTS-025 chr1 228698405 228699477 1073 * character(0) 0.492 1 NA 1.30551892232565 7 0.492777985361707 4 4 0 -5.76441819626993 LTS-025 chr1 228699478 229461024 761547 * c(SPHAR, CCSAP, DUSP5P1, RHOU, RAB4A) 0.469831279899015 12 0.0199185842870421 0.997247378449682 329 0.239412345938545 4 2 2 -12.5443370098129 LTS-025 chr1 229461025 229601333 140309 * c(CCSAP, NUP133, ACTA1) 0 1 NA 1.01277961076572 129 0.204070343121828 3 3 0 -5.77527063628047 LTS-025 chr1 229601334 230372141 770808 * c(ABCB10, GALNT2, TAF5L, NUP133, URB2) 0.339188336001697 18 0.213158874744527 1.04681754599657 475 0.323302515483374 3 2 1 -6.78380253995632 LTS-025 chr1 230372142 230415025 42884 * GALNT2 0.496 1 NA 1.09049140083427 55 0.271513683144478 4 4 0 -5.76984158580004 LTS-025 chr1 230415026 230973407 558382 * c(CAPN9, AGT, COG2, GALNT2, PGBD5, C1orf198) 0.406272000876766 21 0.142204179163021 1.1003432250044 431 0.377050236879591 4 2 2 -6.80669291847107 LTS-025 chr1 230973408 230974564 1157 * C1orf198 0 1 NA 1.08609561575259 25 0.982487070313566 4 4 0 -5.76442206289218 LTS-025 chr1 230974565 232564297 1589733 * c(LINC00582, MIR1182, TSNAX-DISC1, C1orf131, EXOC8, LOC149373, DISC2, DISC1, FAM89A, TRIM67, EGLN1, SIPA1L2, SNRPD2P2, ARV1, TSNAX, TTC13, SPRTN, GNPAT, C1orf198) 0.327713041179789 29 0.213324811893643 1.0521784070824 1390 0.33508377929054 3 2 1 -6.83695589696157 LTS-025 chr1 232564298 232581285 16988 * SIPA1L2 0 1 NA 1.08721352762306 33 0.267729779532432 4 4 0 -5.76673215034012 LTS-025 chr1 232581286 233512191 930906 * c(MAP10, SIPA1L2, PCNX2, NTPCR, MLK4) 0.0946961300440945 10 0.197422952622592 1.08029065201512 680 0.47042096272489 3 3 0 -6.83416255977409 LTS-025 chr1 233512192 233512313 122 * MLK4 0.459 1 NA 0.977198881720033 3 0.254095126543846 3 3 0 -5.76441172436448 LTS-025 chr1 233512314 234445039 932726 * c(MIR4671, MIR4427, SLC35F3, KCNK1, MLK4) 0.335348508350008 10 0.231403543620231 1.11055108206327 186 0.372127155289122 4 2 2 -6.79081216769205 LTS-025 chr1 234445040 234527008 81969 * c(SLC35F3, COA6) 0.210745992966481 3 0.274241377865072 0.888469022387347 77 0.419858650904773 4 3 1 -6.78576559565427 LTS-025 chr1 234527009 234546354 19346 * TARBP1 0.352 1 NA 0.999731429401991 43 0.272921591131719 3 3 0 -5.76497849762442 LTS-025 chr1 234546355 235285740 739386 * c(LINC00184, LINC01354, LINC01132, IRF2BP2, TARBP1, TOMM20) 0.450801303411782 9 0.0319648244168492 0.983056034528267 296 0.27658059039713 4 2 2 -9.55732258124669 LTS-025 chr1 235285741 235331521 45781 * c(RBM34, ARID4B, SNORA14B, TOMM20) 0 1 NA 0.923563242382694 115 0.241891596841283 3 3 0 -5.76457695150598 LTS-025 chr1 235331522 235543464 211943 * c(MIR4753, ARID4B, TBCE, GGPS1) 0.472 1 NA 0.942288112226134 192 0.187021969966681 3 3 0 -5.76441555350287 LTS-025 chr1 235543465 235564738 21274 * TBCE NA 0 NA 0.546 1 NA NA NA NA NA LTS-025 chr1 235564739 235613721 48983 * c(B3GALNT2, TBCE) 0 2 0 0.523831884793706 93 0.133708088643421 0 0 0 -Inf LTS-025 chr1 235613722 235616310 2589 * B3GALNT2 NA 0 NA 0.755 1 NA NA NA NA NA LTS-025 chr1 235616311 236212085 595775 * c(MIR1537, LYST, B3GALNT2, GNG4, NID1) 0.388201198032854 11 0.18353439112949 1.00908333342649 647 0.276572479779293 3 2 1 -6.81507102897882 LTS-025 chr1 236212086 236371831 159746 * c(NID1, GPR137B) 0.477 1 NA 1.01711452545784 73 0.231692148166635 3 3 0 -5.77515227133954 LTS-025 chr1 236371832 236647542 275711 * c(EDARADD, ERO1B, GPR137B) 0.458921628684329 17 0.0257153536192817 1.00616447538402 247 0.284704493228507 4 2 2 -10.5566878978305 LTS-025 chr1 236647543 236647562 20 * EDARADD 0.435 1 NA 1.14 1 NA NA NA NA NA LTS-025 chr1 236647563 236700857 53295 * c(LGALS8-AS1, EDARADD, LGALS8) 0.178044445339421 9 0.219562633432923 1.29558167685302 33 1.84437632351082 6 5 1 -6.73441208776956 LTS-025 chr1 236700858 236702374 1517 * LGALS8 0.465 1 NA 1.03042725762562 9 0.144347766791793 3 3 0 -5.76476875136951 LTS-025 chr1 236702375 236716959 14585 * c(LGALS8, HEATR1) 0.451393885494642 15 0.0299710971882357 1.09168557304663 145 0.27301648775524 4 2 2 -9.52307447634076 LTS-025 chr1 236716960 236716990 31 * HEATR1 0 1 NA 3.823 1 NA NA NA NA NA LTS-025 chr1 236716991 236899853 182863 * c(HEATR1, ACTN2) 0.369645717874876 21 0.19214124269104 0.981505639743386 280 0.424106540135934 3 2 1 -6.75934191907477 LTS-025 chr1 236899854 236926667 26814 * ACTN2 0.396451657811729 7 0.174362375801771 1.13770417706055 101 1.14475294520021 4 2 2 -6.74858525828725 LTS-025 chr1 236926668 236966748 40081 * c(MTR, ACTN2) 0 1 NA 1.14169229359872 37 0.185995063546492 4 4 0 -5.76873671090765 LTS-025 chr1 236966749 240071446 3104698 * c(LOC100130331, CHRM3, LINC01139, MTR, ZP4, RYR2, MT1HL1) 0.190642250763378 19 0.235166930881272 1.10158115966823 1016 0.442141354547381 4 3 1 -6.9136817191314 LTS-025 chr1 240071447 240073226 1780 * CHRM3 0.489 1 NA 1.10128212739811 37 0.183288352385306 4 4 0 -5.76482998989607 LTS-025 chr1 240073227 242042301 1969075 * c(MIR3123, CHML, WDR64, FH, OPN3, FMN2, RGS7, GREM2, RPS7P5, KMO, EXO1) 0.343856232069532 38 0.198993121606394 1.10207515332652 1038 0.444750944505987 4 2 2 -6.81910626406244 LTS-025 chr1 242042302 242383334 341033 * c(PLD5, MAP1LC3C, EXO1) 0 1 NA 1.13918742610745 97 0.367167384602924 4 4 0 -5.77438072290243 LTS-025 chr1 242383335 246829859 4446525 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, ADSS, CNST, PLD5, C1orf100, LOC255654, C1orf101, NA, HNRNPU, LOC339529, DESI2, KIF26B, TFB2M, SMYD3, LINC01347, EFCAB2, CEP170) 0.158813003741079 36 0.219658255493276 1.08595532533718 1768 0.474851179078685 4 3 1 -7.05824930564672 LTS-025 chr1 246829860 246930564 100705 * c(CNST, SCCPDH) 0.459 1 NA 1.09043983558336 101 0.426591130328852 4 4 0 -5.76958126073847 LTS-025 chr1 246930565 247202209 271645 * c(ZNF670-ZNF695, LINC01341, AHCTF1, SCCPDH, ZNF695, ZNF670) 0.289710053217559 13 0.210586147789986 1.02046042848973 452 0.428789386329028 3 2 1 -6.76088147971674 LTS-025 chr1 247202210 247241850 39641 * c(ZNF670-ZNF695, ZNF670) 0.494 1 NA 0.932267792734496 7 0.368134356943093 3 3 0 -5.76442587384432 LTS-025 chr1 247241851 247462701 220851 * c(MIR3916, ZNF670-ZNF695, C1orf229, ZNF124, ZNF669, ZNF670) 0.402622865978687 12 0.140967087282705 1.0726645243711 216 0.439407348401751 4 2 2 -6.78182209954993 LTS-025 chr1 247462702 247586671 123970 * c(NLRP3, ZNF496) 0 1 NA 1.09510918752728 109 0.23302252636037 4 4 0 -5.78426050687039 LTS-025 chr1 247586672 247739549 152878 * c(NLRP3, OR2B11, GCSAML, GCSAML-AS1, OR2W5, OR2C3) 0.148919720706928 9 0.232751715592197 1.15316255702336 259 0.743084773498414 6 5 1 -6.78045091878888 LTS-025 chr1 247739550 247740575 1026 * GCSAML 0.466 1 NA 1.31660542860337 21 0.47643829361109 4 4 0 -5.76442110220071 LTS-025 chr1 247740576 248059856 319281 * c(TRIM58, OR1C1, OR14A16, OR6F1, OR2W3, OR11L1, OR13G1, OR2G3, OR2G2) 0.426698831423074 19 0.151029178854608 1.14595710914284 327 0.543716142484 4 2 2 -6.82474008160112 LTS-025 chr1 248059857 248112627 52771 * c(TRIM58, OR2L13, OR2T8, OR2L8) 0.355 1 NA 1.21679827606058 37 0.260568220044765 4 4 0 -5.76451800524131 LTS-025 chr1 248112628 248722888 610261 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR2T3, OR2T29, OR2M1P, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR2L5) 0.298656462068994 27 0.17285060987261 1.14416676772377 455 0.811700438331679 4 3 1 -6.76028747069484 LTS-025 chr1 248722889 248737329 14441 * OR2T34 0.366 1 NA 2.04031599027084 9 2.19056864763467 7 7 0 -5.76441267939817 LTS-025 chr1 248737330 249212821 475492 * c(MIR3124, OR2T34, OR2T10, OR2T11, PGBD2, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.195272787997975 9 0.206630978101327 1.03746119088316 415 0.419739157875711 4 3 1 -6.84773006695027 LTS-025 chr1 249212822 249214134 1313 * PGBD2 NA 0 NA 1.00800455503944 23 0.23470152603703 3 NA NA -5.7644774593336 LTS-025 chr2 38824 39400 577 * FAM110C 0 1 NA 1.10008658530737 11 0.193290455015244 4 4 0 -5.76453469642986 LTS-025 chr2 39401 5840789 5801389 * c(LINC01304, RNASEH1-AS1, TMEM18, MYT1L, RNASEH1, SH3YL1, FAM150B, LINC01115, TRAPPC12, ACP1, SNTG2, ADI1, ALLC, RPS7, FAM110C, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11) 0.259800546353304 50 0.224529949822617 1.07586978220245 1775 0.38366044659764 4 3 1 -7.15455000829544 LTS-025 chr2 5840790 7036472 1195683 * c(CMPK2, LINC01105, LOC400940, LINC00487, SOX11, RSAD2) 0.448 1 NA 1.06885819445044 175 0.349097448343676 3 3 0 -5.85825698420827 LTS-025 chr2 7036473 9547363 2510891 * c(LOC100506274, MBOAT2, LINC00298, LINC00299, ID2, RNF144A-AS1, KIDINS220, ASAP2, RSAD2, ITGB1BP1, RNF144A) 0.466512454169401 19 0.0334719049510576 1.02122242796325 887 0.240253035375145 4 2 2 -10.5551667729759 LTS-025 chr2 9547364 9548342 979 * ITGB1BP1 0 1 NA 1.05872045392718 9 0.168044636927216 3 3 0 -5.76469811677614 LTS-025 chr2 9548343 10264057 715715 * c(YWHAQ, CYS1, IAH1, GRHL1, CPSF3, RRM2, ADAM17, KLF11, TAF1B, ITGB1BP1) 0.370362972626716 18 0.176421778108174 0.973012665731819 782 0.272696964605844 3 2 1 -6.77043056280343 LTS-025 chr2 10264058 10267309 3252 * RRM2 0 1 NA 1.33717984471811 11 2.13210301217963 4 4 0 -5.7644128214778 LTS-025 chr2 10267310 10729166 461857 * c(SNORA80B, MIR4261, HPCAL1, C2orf48, ODC1, RRM2, NOL10) 0.260592735688053 14 0.206539887853957 1.06546449686824 255 0.498655699665318 4 3 1 -6.75751457702788 LTS-025 chr2 10729167 10743319 14153 * NOL10 0.477 1 NA 0.945040024137633 23 0.104518810834136 3 3 0 -5.76442343799735 LTS-025 chr2 10743320 10960952 217633 * c(PDIA6, ATP6V1C2, NOL10) 0.418781657826069 14 0.127267845096884 0.963652848310178 247 0.330429153619999 4 2 2 -6.8984907859543 LTS-025 chr2 10960953 10977923 16971 * PDIA6 0 1 NA 0.740943611743509 11 0.292109008295315 2 2 0 -5.76661123813278 LTS-025 chr2 10977924 14779641 3801718 * c(MIR3125, MIR4262, LOC100506474, MIR4429, LINC00570, PDIA6, C2orf50, PQLC3, FAM84A, E2F6, LPIN1, NTSR2, FLJ33534, TRIB2, KCNF1, ROCK2, GREB1) 0.319067262312343 25 0.22135662779024 1.05378178590909 1247 0.317805870453494 3 2 1 -7.01011784105689 LTS-025 chr2 14779642 15427173 647532 * c(FAM84A, NBAS) 0.496 1 NA 1.06919102096086 85 0.279524919590846 3 3 0 -5.84425693988048 LTS-025 chr2 15427174 17962518 2535345 * c(MYCNOS, DDX1, GEN1, MYCN, NBAS, RAD51AP2, VSNL1, SMC6, FAM49A) 0.434215139293472 38 0.109297436326211 1.06837486236728 916 0.272559528446753 4 2 2 -7.34679831740101 LTS-025 chr2 17962519 17963867 1349 * c(GEN1, SMC6) 0 1 NA 0.979810132796779 29 0.513445058001542 3 3 0 -5.76441510956443 LTS-025 chr2 17963868 20403692 2439825 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, MSGN1, GEN1, KCNS3, LINC00954, MATN3, WDR35, RDH14, SDC1, SMC6, NT5C1B, LAPTM4A) 0.31800812748025 9 0.227991227901426 1.04998420105305 693 0.309978375339081 3 2 1 -6.91187247007654 LTS-025 chr2 20403693 20840347 436655 * c(PUM2, RHOB, SDC1, HS1BP3) 0.5 1 NA 0.983275917413716 435 0.25441361913664 3 3 0 -5.77216520313706 LTS-025 chr2 20840348 24194314 3353967 * c(KLHL29, GDF7, UBXN2A, APOB, ATAD2B, LDAH, HS1BP3, LOC645949) 0.387277665277874 26 0.150181290445914 1.07765488076234 1146 0.28846804729711 4 2 2 -7.16310900061119 LTS-025 chr2 24194315 24225802 31488 * UBXN2A 0 1 NA 0.942632868440171 59 0.334524791836136 3 3 0 -5.76441055965308 LTS-025 chr2 24225803 24286420 60618 * c(FKBP1B, MFSD2B, WDCP) 0.107442696370218 9 0.208912062839847 1.06543937173751 221 0.42325416884403 3 3 0 -6.80653436743674 LTS-025 chr2 24286421 24342505 56085 * c(FKBP1B, PFN4, FAM228B, SF3B6, TP53I3) 0.445 1 NA 1.02281815006048 106 0.279262804408903 3 3 0 -5.76739739975876 LTS-025 chr2 24342506 25194741 852236 * c(ADCY3, PFN4, FAM228B, PTRHD1, ITSN2, DNAJC27, FAM228A, CENPO, NCOA1) 0.375116501827652 26 0.170874281271349 1.02722390121702 894 0.343027240233821 3 2 1 -6.80738931698361 LTS-025 chr2 25194742 25369245 174504 * c(EFR3B, DNAJC27, DNAJC27-AS1) 0 1 NA 1.01504873220768 125 0.560398168010636 3 3 0 -5.7663150937385 LTS-025 chr2 25369246 26152198 782953 * c(MIR1301, DNMT3A, DTNB, EFR3B, KIF3C, POMC, ASXL2) 0 12 0 1.00915422274072 672 0.398588218074076 0 0 0 -Inf LTS-025 chr2 26152199 26205051 52853 * KIF3C 0.427 1 NA 1.06357451469087 73 0.194916611760863 3 3 0 -5.77686873097546 LTS-025 chr2 26205052 26484022 278971 * c(RAB10, GAREM2, HADHA, HADHB, KIF3C) 0.33637733309374 9 0.229643261990806 1.02157238522097 353 0.33332369398673 3 2 1 -6.74358470934449 LTS-025 chr2 26484023 26507867 23845 * HADHB 0 1 NA 1.0522468025762 51 0.327771445956346 3 3 0 -5.76606796469274 LTS-025 chr2 26507868 26781503 273636 * c(ADGRF3, HADHB, SELENOI, DRC1, OTOF) 0.0588800729840421 14 0.152616160047658 1.10396396041736 705 0.4884749793058 3 3 0 -6.76458446217717 LTS-025 chr2 26781504 26801795 20292 * c(C2orf70, OTOF) 0.496 1 NA 1.01924371577052 27 0.314515296599183 3 3 0 -5.76519232762084 LTS-025 chr2 26801796 27424636 622841 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, MAPRE3, C2orf70, PRR30, KCNK3, KHK, TMEM214, SLC35F6, DPYSL5, AGBL5, ABHD1, SLC5A6) 0.204587736652747 14 0.233214799824417 1.07083969784667 1102 0.338826723539881 4 3 1 -6.83758175030109 LTS-025 chr2 27424637 27427384 2748 * SLC5A6 0 1 NA 0.991504846282754 23 0.628740575645035 3 3 0 -5.76442146652318 LTS-025 chr2 27427385 27486862 59478 * c(ATRAID, SLC30A3, CAD, SLC5A6) 0.119857319219286 9 0.20485957249893 1.08220138312043 427 0.456242534453592 7 6 1 -6.8303997850955 LTS-025 chr2 27486863 27532870 46008 * c(DNAJC5G, MPV17, TRIM54, UCN, SLC30A3) 0.488 1 NA 1.05683834629718 111 0.262403804768065 3 3 0 -5.76979484925112 LTS-025 chr2 27532871 27547581 14711 * MPV17 NA 0 NA 1.07644314425817 66 0.233734886576217 3 NA NA -5.76732376407243 LTS-025 chr2 27547582 27676287 128706 * c(GTF3C2-AS1, ZNF513, KRTCAP3, FTH1P3, IFT172, GTF3C2, NRBP1, MPV17, PPM1G, EIF2B4, SNX17) 0.46518045099335 15 0.0320599141489508 0.972121347669046 638 0.245600931200863 4 2 2 -9.91799469623427 LTS-025 chr2 27676288 27681676 5389 * IFT172 0 1 NA 1.03814370864177 43 0.222216434956019 3 3 0 -5.76504009390369 LTS-025 chr2 27681677 27800783 119107 * c(IFT172, GCKR, FNDC4, C2orf16) 0.219746431986428 9 0.250215629230292 1.00900113217849 350 0.446470172839537 4 3 1 -6.76642370020004 LTS-025 chr2 27800784 27801403 620 * C2orf16 0.444 1 NA 1.00577808738486 15 0.290456160121249 3 3 0 -5.76442955970179 LTS-025 chr2 27801404 27874563 73160 * c(GPN1, CCDC121, C2orf16, ZNF512, SUPT7L) 0.465470286350451 11 0.0167771489613917 0.961034911456496 365 0.239516531107546 4 2 2 -12.9018712945352 LTS-025 chr2 27874564 27876157 1594 * SUPT7L 0 1 NA 1.06912935470076 27 0.480073902193143 3 3 0 -5.76447756140654 LTS-025 chr2 27876158 28800999 924842 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, SLC4A1AP, FOSL2, RBKS, MRPL33, BRE, SUPT7L) 0.322806405531664 13 0.220110024935083 0.958033394035522 693 0.282224759639958 3 2 1 -6.73590342325482 LTS-025 chr2 28801000 28816948 15949 * PLB1 0.458 1 NA 1.00231630562234 65 0.235057777267305 3 3 0 -5.76509695882755 LTS-025 chr2 28816949 29045290 228342 * c(PLB1, SPDYA, PPP1CB) 0.461526416065258 9 0.0270370116691916 0.952151099974943 321 0.237211365806441 4 2 2 -10.5403197259694 LTS-025 chr2 29045291 29169612 124322 * c(WDR43, SPDYA, SNORD53, TRMT61B, SNORD92) 0.460641770641433 4 0.0394493345951487 1.04992391286251 173 0.27490585564212 4 2 2 -8.97497480604389 LTS-025 chr2 29169613 29284639 115027 * c(FAM179A, WDR43, C2orf71) 0 1 NA 1.06491667265024 137 0.256223063492243 3 3 0 -5.78041745881445 LTS-025 chr2 29284640 31178818 1894179 * c(ALK, LCLAT1, C2orf71, YPEL5, GALNT14, CLIP4, LBH, CAPN13) 0.277764022162035 23 0.219183987903678 1.04833982175224 943 0.382744641045513 3 2 1 -6.85606385712305 LTS-025 chr2 31178819 31181229 2411 * GALNT14 0 1 NA 1.48504683038554 5 1.3055356372003 5 5 0 -5.76441088102367 LTS-025 chr2 31181230 31490090 308861 * c(EHD3, CAPN14, GALNT14) 0.171222259067005 12 0.227779931007315 1.10343332579299 226 0.62309939471421 5 4 1 -6.80699675193755 LTS-025 chr2 31490091 31490659 569 * EHD3 0.468 1 NA 1.05703597400483 13 0.517795239700415 3 3 0 -5.76442727814928 LTS-025 chr2 31490660 32476390 985731 * c(EHD3, MEMO1, SLC30A6, NLRC4, SPAST, SRD5A2, XDH, DPY30) 0.378903754260581 19 0.197848146033489 1.02377738789751 725 0.326244455802537 3 2 1 -6.80833970989151 LTS-025 chr2 32476391 32535707 59317 * c(NLRC4, YIPF4) 0 1 NA 0.982527454474353 121 0.242675087739484 3 3 0 -5.76552930714096 LTS-025 chr2 32535708 33036265 500558 * c(MIR4765, TTC27, BIRC6, MIR558) 0.186401039507017 9 0.235665075430743 1.07645946281761 549 0.348139737290779 4 3 1 -6.84409204519302 LTS-025 chr2 33036266 33359565 323300 * c(LOC100271832, LINC00486, LTBP1, TTC27) 0.451 1 NA 0.933677005152487 59 0.243700724762077 3 3 0 -5.76461706162614 LTS-025 chr2 33359566 36778175 3418610 * c(LOC100288911, MYADML, RASGRP3, FAM98A, LTBP1, CRIM1) 0.412780368999643 15 0.164140532123282 1.05913221622769 653 0.289302277234057 3 2 1 -7.20511882216605 LTS-025 chr2 36778176 38522643 1744468 * c(CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, SULT6B1, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, STRN, FEZ2) 0.41170961721684 54 0.142458150339611 0.987102786886757 1758 0.26902852073687 3 2 1 -6.95618889937449 LTS-025 chr2 38522644 38604351 81708 * ATL2 0.433 1 NA 0.924664565111546 93 0.257245945334104 3 3 0 -5.76464114863891 LTS-025 chr2 38604352 38917110 312759 * c(GALM, ATL2, HNRNPLL) NA 0 NA 0.951407969183977 185 0.294719876162782 3 NA NA -5.76466458348742 LTS-025 chr2 38917111 38925415 8305 * GALM NA 0 NA 1.574 1 NA NA NA NA NA LTS-025 chr2 38925416 38972385 46970 * c(GALM, SRSF7) NA 0 NA 1.38895077536258 73 0.274490014872746 5 NA NA -5.76789541497559 LTS-025 chr2 38972386 38973179 794 * SRSF7 NA 0 NA 0.775 1 NA NA NA NA NA LTS-025 chr2 38973180 39944598 971419 * c(ARHGEF33, TMEM178A, CDKL4, LOC375196, SRSF7, SOS1, LOC728730, MORN2, GEMIN6, MAP4K3, DHX57) 0.0521357393320214 9 0.152666666666667 0.959928090763493 891 0.316151440102052 3 3 0 -6.74244963819377 LTS-025 chr2 39944599 39963667 19069 * c(TMEM178A, THUMPD2) 0.481 1 NA 0.987975142182731 17 0.221849462076268 3 3 0 -5.76495839648864 LTS-025 chr2 39963668 44942384 4978717 * c(SLC8A1-AS1, LINC01126, MIR548AD, LRPPRC, PLEKHH2, OXER1, KCNG3, HAAO, EML4, LOC388942, C2orf91, DYNC2LI1, PPM1B, MTA3, THADA, ABCG5, ABCG8, SLC3A1, SLC8A1, ZFP36L2, C1GALT1C1L, CAMKMT, THUMPD2, PKDCC, COX7A2L, PREPL) 0.406043987145222 66 0.117512060582241 1.0264684672718 2579 0.32724505988896 3 2 1 -7.17644290646521 LTS-025 chr2 44942385 44999465 57081 * CAMKMT 0 1 NA 1.02075073621103 23 0.645884224013901 3 3 0 -5.76495143130574 LTS-025 chr2 44999466 46739157 1739692 * c(SIX2, EPAS1, TMEM247, LINC01121, SRBD1, PRKCE, SIX3, CAMKMT, ATP6V1E2) 0.287925041556567 9 0.217663221003866 1.06319765433451 542 0.357986714111677 3 2 1 -6.87427371061266 LTS-025 chr2 46739158 46986416 247259 * c(RHOQ, PIGF, ATP6V1E2, CRIPT, SOCS5) 0.481 1 NA 0.929971147911075 185 0.254926326077515 3 3 0 -5.76473538283583 LTS-025 chr2 46986417 47130925 144509 * c(LINC01119, LINC01118, MCFD2, SOCS5) 0.46033775958343 12 0.0318950694394205 0.910059692274892 144 0.266101332471968 4 2 2 -9.78164097183892 LTS-025 chr2 47130926 47131085 160 * MCFD2 0 1 NA 0.594369596241545 4 0.272220958046951 2 2 0 -5.7644193448847 LTS-025 chr2 47131086 48756682 1625597 * c(PPP1R21, C2orf61, MSH6, FOXN2, EPCAM, MSH2, KCNK12, TTC7A, MIR559, FBXO11, CALM2, MCFD2) 0.3338875696522 27 0.207231259398274 1.04912618149061 1077 1.3764967119546 3 2 1 -6.73929173780889 LTS-025 chr2 48756683 48824134 67452 * c(STON1, STON1-GTF2A1L) 0 1 NA 1.03094618144333 92 0.265961859712604 3 3 0 -5.76915905352042 LTS-025 chr2 48824135 50574155 1750021 * c(GTF2A1L, STON1, FSHR, STON1-GTF2A1L, LHCGR, NRXN1) 0.220682536983738 13 0.239419142177533 1.0724896349413 471 0.449626844515371 4 3 1 -6.8547906873451 LTS-025 chr2 50574156 51146719 572564 * NRXN1 0.28 1 NA 1.14424114363567 185 0.285856396219666 4 4 0 -5.78903532954737 LTS-025 chr2 51146720 54362690 3215971 * c(MIR3682, GPR75, PSME4, ERLEC1, CHAC2, ASB3, NRXN1, ACYP2) 0.293727697143196 18 0.1957441974866 1.00257684956873 549 0.295528385120038 3 2 1 -6.84081795343377 LTS-025 chr2 54362691 54370348 7658 * ACYP2 0.463 1 NA 0.940997001485287 29 0.162102131340774 3 3 0 -5.7644101385998 LTS-025 chr2 54370349 54951888 581540 * c(C2orf73, TSPYL6, RPL23AP32, SPTBN1, ACYP2) 0.467956152763255 13 0.0188839234298004 0.992291450431081 465 0.264775152229987 4 2 2 -12.6046752642828 LTS-025 chr2 54951889 55091096 139208 * EML6 0 1 NA 1.06103786384353 63 0.421548934706611 3 3 0 -5.77116096518277 LTS-025 chr2 55091097 58381785 3290689 * c(MIR216B, CFAP36, CCDC85A, CLHC1, EFEMP1, PRORSD1P, EML6, MIR216A, MIR217, MTIF2, CCDC88A, RTN4, PPP4R3B, RPS27A, VRK2, PNPT1) 0.303542969871809 33 0.218906052562475 1.04442894762158 1385 0.352181502422794 3 2 1 -6.90972535027336 LTS-025 chr2 58381786 58425742 43957 * c(FANCL, VRK2) 0 1 NA 1.02505893518344 43 0.236729424867308 3 3 0 -5.76784165377243 LTS-025 chr2 58425743 61022536 2596794 * c(MIR4432, LINC01122, BCL11A, FANCL, PAPOLG) 0.0862536850469908 11 0.195401544610997 1.08750791391466 321 0.508256714860645 4 4 0 -6.88241047988576 LTS-025 chr2 61022537 61108829 86293 * c(LINC01185, REL, PAPOLG) 0.423 1 NA 1.05405497633533 95 0.239281869329713 3 3 0 -5.7759978292815 LTS-025 chr2 61108830 61577812 468983 * c(AHSA2, PUS10, LOC339803, C2orf74, PEX13, REL, KIAA1841, USP34) 0.276535106819843 17 0.23159650510418 0.991351024178866 789 0.285071875071226 3 2 1 -6.77436307327931 LTS-025 chr2 61577813 61605614 27802 * USP34 0.382 1 NA 1.03235050483531 13 0.444380438767251 3 3 0 -5.76513284437525 LTS-025 chr2 61605615 64335394 2729780 * c(SNORA70B, LOC100132215, DBIL5P2, MIR5192, CCT4, B3GNT2, COMMD1, TMEM17, EHBP1, MDH1, OTX1, WDPCP, VPS54, PELI1, UGP2, XPO1, FAM161A, USP34) 0.397609251467572 28 0.165993386111629 0.991304901124393 1271 0.291250788070407 3 2 1 -6.88212998681839 LTS-025 chr2 64335395 64820119 484725 * c(MIR4434, LINC00309, LGALSL, AFTPH, PELI1) 0 1 NA 1.0469247805883 193 0.30247467555181 3 3 0 -5.80026512519194 LTS-025 chr2 64820120 65539822 719703 * c(ACTR2, SPRED2, CEP68, LOC339807, LOC400958, AFTPH, RAB1A, SLC1A4, SERTAD2) 0.236807068311418 10 0.242551346224991 0.988373535842856 528 0.358693359286459 3 2 1 -6.82865002346101 LTS-025 chr2 65539823 65559027 19205 * SPRED2 0.419 1 NA 1.1518806406359 37 0.221896355293395 4 4 0 -5.76555777680492 LTS-025 chr2 65559028 70106832 4547805 * c(SNORA36C, MIR3126, MIR4778, C1D, PROKR1, WDR92, GKN2, APLF, SPRED2, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, MEIS1, PLEK, ETAA1, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, LOC644838, MEIS1-AS3, ANTXR1, ARHGAP25) 0.413852809611917 35 0.13580047771602 0.991805763487157 1924 0.313755017890859 3 2 1 -7.02795837528965 LTS-025 chr2 70106833 70108256 1424 * character(0) 0.491 1 NA 1.06030230202888 19 0.316719700083611 3 3 0 -5.76453110779676 LTS-025 chr2 70108257 70315899 207643 * c(SNRNP27, ASPRV1, PCBP1-AS1, MXD1, PCBP1) 0.146739858697183 8 0.238833474562149 1.05128354248515 296 0.633771147448766 5 4 1 -6.82689252529831 LTS-025 chr2 70315900 70377388 61489 * c(LOC100133985, PCBP1, C2orf42) 0 1 NA 0.880024450553042 23 0.43827248459262 3 3 0 -5.76527582021086 LTS-025 chr2 70377389 70377653 265 * C2orf42 0.486 1 NA 0.825782646838118 7 0.148342749834872 3 3 0 -5.7645332052582 LTS-025 chr2 70377654 70528827 151174 * c(PCYOX1, C2orf42, SNRPG, TIA1, FAM136A) 0.470286389274219 12 0.0282965893650979 0.933928206427759 411 1.34561367405822 4 2 2 -10.5731943679112 LTS-025 chr2 70528828 70675507 146680 * c(TGFA, FAM136A) 0 1 NA 0.88887462769088 35 0.462344685709008 3 3 0 -5.76575376532618 LTS-025 chr2 70675508 70780841 105334 * TGFA 0.207149137965101 2 0.339411254969543 0.916345383300691 96 0.415327627491713 4 3 1 -6.7823652096627 LTS-025 chr2 70780842 70780905 64 * TGFA 0 1 NA 2.182 1 NA NA NA NA NA LTS-025 chr2 70780906 70903240 122335 * c(ADD2, TGFA) 0.0761396285401695 6 0.183303482418274 1.14789460166062 130 0.702613313562976 3 3 0 -6.7682802560537 LTS-025 chr2 70903241 70903664 424 * ADD2 0.475 1 NA 1.06866257473314 11 0.475983632262516 3 3 0 -5.76442822357578 LTS-025 chr2 70903665 71206267 302603 * c(ADD2, CLEC4F, VAX2, FIGLA, CD207, ATP6V1B1, ANKRD53) 0.321936677601816 9 0.20908670450318 1.07723664261887 337 0.374498911245159 3 2 1 -6.75748029510403 LTS-025 chr2 71206268 71212158 5891 * ANKRD53 0 1 NA 1.15488906056886 33 0.717508925876272 4 4 0 -5.76444134440059 LTS-025 chr2 71212159 71838597 626439 * c(MPHOSPH10, TEX261, ZNF638, PAIP2B, NAGK, OR7E91P, ANKRD53, DYSF, MCEE) 0.177397359395758 22 0.230454909620007 1.03050064421875 868 0.384552704436306 4 3 1 -6.89911875041123 LTS-025 chr2 71838598 71896336 57739 * DYSF 0 1 NA 1.13778153670896 61 0.367610503069775 4 4 0 -5.76614817192384 LTS-025 chr2 71896337 73285589 1389253 * c(EMX1, EXOC6B, CYP26B1, SPR, DYSF, SFXN5) 0.0245285059455181 13 0.108998588558258 1.09913567848323 640 0.419043520572976 4 4 0 -6.79783006594175 LTS-025 chr2 73285590 73285752 163 * SFXN5 0.434 1 NA 0.678005676192003 3 0.436873360750382 2 2 0 -5.76441126306429 LTS-025 chr2 73285753 73447775 162023 * c(SMYD5, RAB11FIP5, NOTO, SFXN5) 0.419463179838075 9 0.162552384718828 1.07844615206427 201 0.271060008318182 4 2 2 -6.81596603260713 LTS-025 chr2 73447776 73447788 13 * SMYD5 0 1 NA 1.912 1 NA NA NA NA NA LTS-025 chr2 73447789 73492824 45036 * c(SMYD5, CCT7, FBXO41, PRADC1) 0.143355160851541 11 0.239113400255649 1.07814283338512 340 0.534596006852951 6 5 1 -6.77534821791234 LTS-025 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.813 1 NA NA NA NA NA LTS-025 chr2 73493010 73513155 20146 * FBXO41 0 2 0 0.964847735257786 42 0.342818535379532 0 0 0 -Inf LTS-025 chr2 73513156 73677548 164393 * c(EGR4, ALMS1) 0.499 1 NA 0.909038163070921 147 0.185153882007278 3 3 0 -5.76787314237015 LTS-025 chr2 73677549 74185876 508328 * c(STAMBP, DGUOK, ALMS1P1, C2orf78, TPRKB, ACTG2, ALMS1, DUSP11, NAT8) 0.431939652004532 21 0.105829647479873 0.959501886994908 731 0.274985107541823 4 2 2 -7.18901335710561 LTS-025 chr2 74185877 74273486 87610 * c(DGUOK, TET3) 0 1 NA 1.04800642251323 25 0.62921390639432 3 3 0 -5.7659456405946 LTS-025 chr2 74273487 74881727 608241 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DOK1, TET3, WBP1, HTRA2, TLX2, BOLA3, C2orf81, AUP1, MOB1A, SLC4A5, RTKN, TTC31, MOGS, INO80B, WDR54, LOXL3, PCGF1, CCDC142, LBX2) 0.114261404006812 14 0.2151655636486 1.00585351787254 1827 0.321299582540504 3 3 0 -6.82802101632977 LTS-025 chr2 74881728 74882302 575 * SEMA4F NA 0 NA 1.662 1 NA NA NA NA NA LTS-025 chr2 74882303 75120025 237723 * c(SEMA4F, HK2) 0.0942471683297392 8 0.210498685099388 1.10438332538461 268 0.595691626777349 3 3 0 -6.78971685380047 LTS-025 chr2 75120026 75185667 65642 * HK2 0.443 1 NA 0.904899374262479 11 0.345872257028253 3 3 0 -5.76491771195956 LTS-025 chr2 75185668 79312414 4126747 * c(SNAR-H, MIR5000, REG3G, POLE4, REG1B, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.392379268558303 16 0.157702620988577 1.07611548411002 508 0.32610871334034 4 2 2 -7.16080712287031 LTS-025 chr2 79312415 79313490 1076 * REG1B 0 1 NA 1.33159707866703 7 1.30402925032926 4 4 0 -5.76441226519493 LTS-025 chr2 79313491 84676883 5363393 * c(MIR4264, CTNNA2, DHFRP3, LRRTM1, FUNDC2P2, REG3A, REG1A, REG1B, REG1CP, SUCLG1) 0.210797531122751 9 0.231530775492158 1.12831432887648 354 0.453912991928287 4 3 1 -6.8904094367663 LTS-025 chr2 84676884 84686276 9393 * SUCLG1 NA 0 NA 0.759 1 NA NA NA NA NA LTS-025 chr2 84686277 85012003 325727 * c(DNAH6, SUCLG1) 0.0964842953144027 6 0.195142682841727 0.998251481563446 332 0.311056551512156 3 3 0 -6.79812304209431 LTS-025 chr2 85012004 85023554 11551 * DNAH6 0.463 1 NA 1.05559775734849 13 0.152540620903552 3 3 0 -5.76833073160483 LTS-025 chr2 85023555 85806915 783361 * c(PARTICL, TGOLN2, TRABD2A, DNAH6, GGCX, SH2D6, MAT2A, RETSAT, KCMF1, CAPG, TCF7L1, ELMOD3, VAMP8, TMSB10) 0.420890666913415 31 0.116184863819024 1.01927827476126 914 0.27359701825666 4 2 2 -7.07672051527622 LTS-025 chr2 85806916 85820537 13622 * c(VAMP5, VAMP8) 0.473 1 NA 0.938028054128655 27 0.278995083129177 3 3 0 -5.76441128524194 LTS-025 chr2 85820538 85922467 101930 * c(GNLY, USP39, TMEM150A, C2orf68, RNF181, SFTPB) 0.0522360221581574 9 0.164333333333333 1.0320083515342 337 0.520458991266712 3 3 0 -6.74118649016253 LTS-025 chr2 85922468 85924729 2262 * GNLY 0.344 1 NA 0.932562041042995 9 0.117581650117884 3 3 0 -5.7644183579479 LTS-025 chr2 85924730 86015096 90367 * c(GNLY, ATOH8) 0.45964034518881 9 0.0259556245242615 0.995312253182155 81 0.314435594202111 4 2 2 -10.4914575044595 LTS-025 chr2 86015097 86066642 51546 * c(LOC284950, ATOH8, ST3GAL5) 0 1 NA 1.27063127387575 15 0.680466821555684 4 4 0 -5.76446280452297 LTS-025 chr2 86066643 86440083 373441 * c(MIR4779, IMMT, POLR1A, MRPL35, PTCD3, SNORD94, ST3GAL5, LOC90784) 0.0312228387256442 9 0.147333333333333 1.01573494449876 681 0.283271871400761 3 3 0 -6.74973075401471 LTS-025 chr2 86440084 86683642 243559 * c(MRPL35, KDM3A, REEP1) 0.4 1 NA 1.04645865699122 153 0.286946540905203 3 3 0 -5.78431462202347 LTS-025 chr2 86683643 87018547 334905 * c(RNF103-CHMP3, CHMP3, KDM3A, RMND5A, RNF103, CD8A) 0.415325157466056 16 0.162309157166193 1.00466209503331 486 0.278124658891478 4 2 2 -6.89179996765318 LTS-025 chr2 87018548 87018771 224 * c(RMND5A, CD8A) 0 1 NA 1.75230080467763 5 0.832672324507066 6 6 0 -5.76441044552356 LTS-025 chr2 87018772 87085504 66733 * c(RMND5A, CD8A, CD8B) 0.287405038524972 2 0.339411254969543 1.05719705241442 65 0.367478240459947 4 3 1 -6.74306424102813 LTS-025 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.635 1 NA NA NA NA NA LTS-025 chr2 87092741 87400212 307472 * c(ANAPC1P1, LOC285074, RMND5A) 0.477 1 NA 0.678483095793554 68 0.29752416476918 2 2 0 -5.76916318617198 LTS-025 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.081 1 NA NA NA NA NA LTS-025 chr2 87404257 87424283 20027 * RMND5A NA 0 NA 0.31552309393385 68 0.341427518573096 1 NA NA -5.76567716315165 LTS-025 chr2 87424284 88411357 987074 * c(MIR4780, CYTOR, SMYD1, KRCC1, RMND5A) 0.295236171595158 10 0.181318136618118 1.10851998478552 200 0.627510168069132 4 3 1 -6.76837604174138 LTS-025 chr2 88411358 88412049 692 * SMYD1 0 1 NA 1.27709842231556 13 1.18267846812832 4 4 0 -5.76441046054958 LTS-025 chr2 88412050 90108574 1696525 * c(MIR4436A, SMYD1, TEX37, FABP1, RPIA, FOXI3, THNSL2, ANKRD36BP2, EIF2AK3) 0.117458779952425 18 0.214173102062464 1.10089470770181 670 0.931741639889516 3 3 0 -6.84838140287591 LTS-025 chr2 90108575 91809324 1700750 * LOC654342 0.4 1 NA 0.877489252354198 49 0.291094173811863 3 3 0 -5.82288880075326 LTS-025 chr2 91809325 91937699 128375 * LOC654342 0.288850101605699 11 0.136095821858251 1.11365111479717 60 0.922194142795133 4 3 1 -6.75389863053796 LTS-025 chr2 91937700 91955470 17771 * character(0) NA 0 NA 0.990925176128221 15 0.134896185833332 3 NA NA -5.76596668711271 LTS-025 chr2 95537183 95542476 5294 * c(TEKT4, LOC442028) 0.203 1 NA 1.08432670744583 45 0.382401063985672 4 4 0 -5.76477981791451 LTS-025 chr2 95542477 96081467 538991 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, ZNF2, ZNF514) 0.0680550533449956 12 0.169203212950367 1.07745716770171 588 0.4499483090569 3 3 0 -6.784287123344 LTS-025 chr2 96081468 96601312 519845 * c(TRIM43, TRIM43B) 0.463 1 NA 1.0507409719528 155 0.44524871609839 3 3 0 -5.78344253627125 LTS-025 chr2 96601313 96619774 18462 * character(0) 0.421597648355438 26 0.0733470150407269 0.769184213045954 61 0.302319700140259 2 1 1 -7.03659594500353 LTS-025 chr2 96619775 96789825 170051 * c(GPAT2, ADRA2B, ASTL, FAHD2CP) 0 1 NA 0.956718068953949 181 0.374542824410471 3 3 0 -5.76460619001875 LTS-025 chr2 96789826 97260006 470181 * c(ARID5A, ITPRIPL1, DUSP2, SNRNP200, NCAPH, STARD7-AS1, ASTL, TMEM127, KANSL3, STARD7, NEURL3, CIAO1) 0.342742300128774 21 0.198605711326307 1.01666615603696 870 0.369579572156011 3 2 1 -6.74772027504188 LTS-025 chr2 97260007 97261110 1104 * KANSL3 0 1 NA 1.07415472457073 23 0.533691573525547 3 3 0 -5.76445074157832 LTS-025 chr2 97261111 97749728 488618 * c(MIR3127, FAHD2B, ANKRD23, CNNM4, CNNM3, ANKRD39, FAM178B, SEMA4C, KANSL3, LMAN2L, FER1L5) 0.109884845315066 13 0.205945785746314 1.03490590774936 1021 0.377068394172378 3 3 0 -6.82890418521345 LTS-025 chr2 97749729 97818192 68464 * c(FAHD2B, ANKRD36) 0.217 1 NA 0.945427459247941 51 0.351736515691203 3 3 0 -5.76441699915275 LTS-025 chr2 97818193 98797446 979254 * c(ACTR1B, COX5B, VWA3B, TMEM131, ANKRD36, ANKRD36B, LINC01125, ZAP70) 0.284303014400327 22 0.194384654588252 1.01206696351012 566 0.389756127032892 3 2 1 -6.78658305066531 LTS-025 chr2 98797447 99014214 216768 * c(CNGA3, VWA3B) 0 1 NA 1.02527029636562 225 0.229718556409207 3 3 0 -5.78242419684349 LTS-025 chr2 99014215 99935849 921635 * c(TXNDC9, MGAT4A, CNGA3, LYG1, MITD1, C2orf15, LYG2, UNC50, KIAA1211L, INPP4A, COA5, MRPL30, LIPT1, TSGA10) 0.0572463141420793 15 0.168849242422543 1.03189688297917 997 0.484355143337286 3 3 0 -6.7629055367286 LTS-025 chr2 99935850 99938301 2452 * c(TXNDC9, MRPL30) 0.412 1 NA 1.0080309793697 15 0.257639060924941 3 3 0 -5.76451458771466 LTS-025 chr2 99938302 101591304 1653003 * c(TXNDC9, NMS, LONRF2, AFF3, NPAS2, MRPL30, REV1, PDCL3, CHST10, EIF5B) 0.414299204135861 49 0.131662863761493 1.02884794486105 1081 0.308311880633692 3 2 1 -7.05030202672636 LTS-025 chr2 101591305 101594256 2952 * NPAS2 0 1 NA 1.13683600109688 13 0.823363769810099 4 4 0 -5.7644282067342 LTS-025 chr2 101594257 102508211 913955 * c(MIR5696, TBC1D8, CREG2, RNF149, NPAS2, CNOT11, RPL31, SNORD89, RFX8, MAP4K4) 0.178602739057516 11 0.245362218325924 1.00949984754242 791 0.347809098868027 3 3 0 -6.95276907104984 LTS-025 chr2 102508212 102641201 132990 * c(IL1R2, MAP4K4) 0.465 1 NA 1.04924765291471 57 0.194459697456406 3 3 0 -5.78925714806358 LTS-025 chr2 102641202 103332590 691389 * c(MIR4772, IL1R1, SLC9A4, SLC9A2, IL1R2, IL18RAP, IL1RL2, IL18R1, IL1RL1) 0.407435495922742 23 0.135884250905941 1.0509462084259 766 0.323465827645355 4 2 2 -6.88406682182385 LTS-025 chr2 103332591 103334452 1862 * MFSD9 0 1 NA 0.97068819567962 33 0.374828705827237 3 3 0 -5.76441773042261 LTS-025 chr2 103334453 106688200 3353748 * c(LOC100287010, LINC01158, GPR45, TMEM182, LINC01102, FHL2, LINC01114, LOC285000, POU3F3, MRPS9, C2orf49, NCK2, C2orf40, MFSD9, TGFBRAP1) 0.273734265090087 25 0.222543418984551 1.07762648183186 799 0.388527224939008 4 3 1 -6.97337289095052 LTS-025 chr2 106688201 106713480 25280 * c(UXS1, C2orf40) 0.463 1 NA 1.00958533631883 46 0.12519333068622 3 3 0 -5.76917594320335 LTS-025 chr2 106713481 109302388 2588908 * c(SULT1C2P1, SULT1C4, PLGLA, RGPD4, LIMS1, SULT1C3, SLC5A7, RGPD3, SULT1C2, RGPD4-AS1, UXS1, ST6GAL2, GCC2) 0.387965870960481 27 0.186511916929442 1.03903922824778 813 0.31364761565262 3 2 1 -6.94090790224854 LTS-025 chr2 109302389 109388836 86448 * c(LIMS1, RANBP2) 0 1 NA 1.00009506648343 81 0.271111114526412 3 3 0 -5.76701421963301 LTS-025 chr2 109388837 111666344 2277508 * c(SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, CCDC138, LINC00116, SH3RF3, NPHP1, ACOXL, RANBP2, SOWAHC, BUB1, MALL) 0.201956876947221 16 0.231216916552401 1.05319060038039 991 0.370758910538717 4 3 1 -7.01908131971091 LTS-025 chr2 111666345 111886332 219988 * c(BCL2L11, ACOXL) 0.347 1 NA 1.01644691056002 81 0.241835012884384 3 3 0 -5.77775391592328 LTS-025 chr2 111886333 112856165 969833 * c(BCL2L11, MERTK, MIR4435-2HG, ANAPC1, TMEM87B) 0.377403540695002 19 0.170853379226114 1.04901172218407 565 0.417875239940284 3 2 1 -6.81754965456614 LTS-025 chr2 112856166 112863603 7438 * TMEM87B 0 1 NA 1.14432680361047 11 0.267070062309159 4 4 0 -5.76477733949722 LTS-025 chr2 112863604 113332727 469124 * c(FBLN7, TTL, ZC3H6, RGPD8, POLR1B, ZC3H8, TMEM87B) 0.23729705196995 10 0.246850404541338 1.05048350781413 627 0.402156427696194 4 3 1 -6.78548882041619 LTS-025 chr2 113332728 113334357 1630 * POLR1B 0.426 1 NA 1.02899410630028 33 0.301374955224159 3 3 0 -5.76449584572067 LTS-025 chr2 113334358 113785202 450845 * c(CKAP2L, IL36B, IL37, IL36A, IL1A, IL1B, FLJ42351, IL36G, SLC20A1, POLR1B, CHCHD5) 0.441558742105188 9 0.161640805491683 1.00639742999592 575 0.293943799133324 4 2 2 -6.98227030678855 LTS-025 chr2 113785203 113785710 508 * IL36B 0 1 NA 1.14106458817924 11 0.593176748149702 4 4 0 -5.76441559479092 LTS-025 chr2 113785711 113832272 46562 * c(IL36RN, IL36B, IL1F10) 0.127537954493521 10 0.237151639252188 1.09631174098952 110 1.00187024125729 8 7 1 -6.75184609891574 LTS-025 chr2 113832273 113832981 709 * IL1F10 0.483 1 NA 1.0446982655158 9 0.276408564347135 3 3 0 -5.76447072746994 LTS-025 chr2 113832982 113888793 55812 * c(IL1RN, IL1F10) 0.441311754365989 9 0.0295695977502419 1.12984348794417 45 0.759494623304394 4 2 2 -9.11988984076526 LTS-025 chr2 113888794 113891412 2619 * IL1RN 0.394 1 NA 1.23242843805981 27 0.580467936789816 4 4 0 -5.76441016253714 LTS-025 chr2 113891413 114398556 507144 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL1RN, WASH2P, FAM138B, PAX8-AS1, PAX8, DDX11L2) 0.22138340679316 9 0.239818160279825 1.04176698563982 332 0.395321539140037 4 3 1 -6.80802525607675 LTS-025 chr2 114398557 114400196 1640 * RABL2A 0.389 1 NA 0.918914282550212 21 0.0849064190741784 3 3 0 -5.76448803586773 LTS-025 chr2 114400197 118866000 4465804 * c(LOC100499194, MIR4782, ACTR3, RABL2A, DPP10-AS1, LINC01191, INSIG2, CCDC93, DPP10, SLC35F5, DDX18) 0.41425723876782 23 0.160209127164708 1.04345316067669 912 0.318012542510426 3 2 1 -7.1636589791381 LTS-025 chr2 118866001 118867637 1637 * INSIG2 NA 0 NA 1.2104691361702 33 0.322155059832618 4 NA NA -5.76441408011791 LTS-025 chr2 119591363 119750781 159419 * c(EN1, MARCO) 0 1 NA 0.592299150613534 125 0.19505714530743 2 2 0 -5.78384751973386 LTS-025 chr2 119750782 129026006 9275225 * c(RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, MYO7B, POLR2D, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, TMEM177, AMMECR1L, NIFK, SFT2D3, LINC01101, MARCO, HS6ST1) 0.0373412256625646 99 0.0574986506433769 0.61012745620823 4407 0.385530997135466 2 2 0 -6.88579090829325 LTS-025 chr2 129026007 129076016 50010 * HS6ST1 0.1 1 NA 0.548064656858681 18 0.250183494750856 2 2 0 -5.77754209020604 LTS-025 chr2 129076017 133174328 4098312 * c(RAB6C-AS1, CYP4F30P, FAR2P2, MIR663B, MIR4784, TUBA3E, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, MED15P9, GPR39, C2orf27A, GPR148, LOC389033, LINC01120, NOC2LP2, C2orf27B, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, ANKRD30BL, SMPD4, CFC1, POTEI, CFC1B, POTEJ, MZT2A, POTEF, MZT2B, RAB6C, CCDC115, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.114175773846322 51 0.107039464959535 0.619637156024619 1559 0.345843366225084 2 2 0 -6.98081583186084 LTS-025 chr2 133174329 133403306 228978 * c(LYPD1, GPR39) 0 1 NA 0.745152539402577 43 0.400253206126318 2 2 0 -5.78153293249595 LTS-025 chr2 133403307 158157533 24754227 * c(CCNT2-AS1, LOC100144595, ZEB2-AS1, MIR3679, LOC100507600, MIR4773-1, MIR4773-2, STAM2, GALNT5, NXPH2, FMNL2, GALNT13, LYPD1, ACMSD, LYPD6, LYPD6B, ARL6IP6, DARS, RAB3GAP1, UBXN4, R3HDM1, EPC2, ARL5A, MMADHC, GPD2, GPR39, HNMT, SPOPL, NCKAP5, RBM43, KCNJ3, KIF5C, RND3, LCT, TEX41, MIR128-1, MCM6, MGAT5, NEB, NR4A2, ORC4, LRP1B, RIF1, PRPF40A, MBD5, ARHGAP15, RPRM, YY1P2, TNFAIP6, PABPC1P2, CACNB4, NA NA NA NA NA NA NA NA NA LTS-025 CXCR4, GTDC1, MAP3K19, THSD7B, TMEM163, ZRANB3, KYNU, CCNT2, NMI, ACVR2A, ZEB2) 0.0444577554585417 121 0.0641220878384378 0.617710001920904 7314 0.253801633650879 2 2 0 -7.19030308582607 LTS-025 NA NA NA NA LTS-025 chr2 158157534 158162236 4703 * GALNT5 NA 0 NA 1.026 1 NA NA NA NA NA LTS-025 chr2 158162237 164460598 6298362 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, GALNT5, ACVR1C, CCDC148, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, BAZ2B, ITGB6, LY75, CCDC148-AS1, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, PKP4, TANC1, ACVR1, KCNH7, DAPL1, CYTIP, CD302) 0.037571949067066 66 0.0354847746332033 1.03713310070629 3281 0.342908185350984 3 3 0 -7.02394739836604 LTS-025 chr2 164460599 165561680 1101082 * c(SNORA70F, COBLL1, GRB14, FIGN) 0 5 0 1.19825216285694 451 0.394561685776419 0 0 0 -Inf LTS-025 chr2 165561681 165578557 16877 * COBLL1 NA 0 NA 0.947 1 NA NA NA NA NA LTS-025 chr2 165578558 170366300 4787743 * c(LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.0265250214728212 48 0.036743407764991 1.07173975237479 3314 0.346406451540262 3 3 0 -7.14761400136218 LTS-025 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 1.016 1 NA NA NA NA NA LTS-025 chr2 170366321 171249012 882692 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, UBR3, MYO3B, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.0200451794243313 11 0.0277174050995858 0.99739136410428 950 0.376068781536788 3 3 0 -6.92590219943693 LTS-025 chr2 171249013 171260797 11785 * MYO3B 0.108 1 NA 1.00865387048269 23 0.208060182460969 3 3 0 -5.76519400861441 LTS-025 chr2 171260798 178482594 7221797 * c(MIR933, LOC100130691, SP9, MIR1246, MIR3128, NA, HOXD-AS2, MTX2, RAPGEF4, CHN1, CHRNA1, ATF2, MYO3B, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, NA NA NA NA NA NA NA NA NA LTS-025 HAT1, AGPS, SLC25A12, RAPGEF4-AS1, TTC30A, CIR1, TLK1) 0.0497201496146414 84 0.0312749728100362 1.02180943360596 4789 0.319588171903763 3 3 0 -7.12911521649202 LTS-025 NA NA NA NA LTS-025 chr2 178482595 178493241 10647 * c(PDE11A, TTC30A) 0 1 NA 0.971361108498974 27 0.355377496814536 3 3 0 -5.76446066473018 LTS-025 chr2 178493242 179300979 807738 * c(MIR548N, OSBPL6, RBM45, PDE11A, PRKRA) 0.234043787055787 9 0.109631199938704 1.06323558705868 426 0.28514949981344 4 3 1 -6.90897388725697 LTS-025 chr2 179300980 179318171 17192 * c(MIR548N, DFNB59, PRKRA) NA 0 NA 0.910604978806772 53 0.242900770830903 3 NA NA -5.76460029042031 LTS-025 chr2 179318172 179425482 107311 * c(MIR548N, TTN-AS1, DFNB59, FKBP7, PLEKHA3, TTN) 0 1 NA 1.09319497924961 741 0.243556831816008 4 4 0 -5.78060836262112 LTS-025 chr2 179425483 179718273 292791 * c(MIR548N, TTN-AS1, CCDC141, TTN) 0.00216402760470007 24 0.0234037885574233 1.08884709438225 2518 0.475176138040605 6 6 0 -7.27417670879105 LTS-025 chr2 179718274 179738505 20232 * CCDC141 0.043 1 NA 1.1213804164316 55 0.487486629014595 4 4 0 -5.76488943052057 LTS-025 chr2 179738506 179738643 138 * CCDC141 NA 0 NA 1.14139615820697 4 0.1305 4 NA NA -5.76444039545538 LTS-025 chr2 179738644 183951865 4213222 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, SESTD1) 0.0551078007894882 28 0.031521114952214 1.01296485343735 1701 0.287802288362046 3 3 0 -7.11802561039821 LTS-025 chr2 183951866 189910657 5958792 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.0600435569337073 55 0.0275068770097276 1.12677865655699 2128 0.335901987479753 4 4 0 -7.71016179867377 LTS-025 chr2 189910658 196601733 6691076 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, SLC39A10, PCGEM1, OSGEPL1, NABP1, STAT1, STAT4, WDR75, C2orf88, SDPR, ORMDL1) 0.0454375060981918 32 0.0354883982632398 1.03695850680516 2634 0.325856292135712 3 3 0 -7.11589861438775 LTS-025 chr2 196601734 198949169 2347436 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.0449780265303579 26 0.0384782855847095 0.954261375765833 2168 0.280104697422046 3 3 0 -6.77288725784793 LTS-025 chr2 198949170 200776077 1826908 * c(SATB2-AS1, C2orf69, SATB2, FTCDNL1, PLCL1) 0.0109191346838033 4 0.015 1.14982561467959 266 0.508420361311664 4 4 0 -7.44750050510677 LTS-025 chr2 200776078 203807621 3031544 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, C2orf69, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.0377103173438366 57 0.0388868128100815 0.993829419348088 3652 0.329249930512257 3 3 0 -6.78440515538955 LTS-025 chr2 203807622 216861072 13053451 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA LTS-025 NDUFS1, INO80D, MREG, PECR, CYP20A1, PTH2R, ZDBF2, BARD1, RPE, SNORA41, LINC00607, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.0395993628670776 138 0.0387474114708904 1.0757196159537 7226 0.395394329634299 3 3 0 -7.52302260647574 LTS-025 NA NA NA NA LTS-025 chr2 216861073 220326753 3465681 * c(LOC100129175, MIR3131, ABCB6, ARPC2, SPEG, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, DNPEP, CFAP65, PNKD, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, NA NA NA NA NA NA NA NA NA LTS-025 WNT6, XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.0386654257741077 124 0.0374759473522708 1.01590988819017 5237 0.358487901983203 3 3 0 -6.83049777466003 LTS-025 NA NA NA NA LTS-025 chr2 220326754 220326947 194 * SPEG NA 0 NA 1.134 1 NA NA NA NA NA LTS-025 chr2 220326948 230096809 9769862 * c(MIR4268, MIR3132, FARSB, MIR4439, MIR5702, MIR5703, SPEG, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, CCDC140, DAW1, EPHA4, ACSL3, OBSL1, KCNE4, GMPPA, AGFG1, INHA, IRS1, PAX3, SERPINE2, PID1, ASIC4, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, SLC4A3, MRPL44, LOC654841, SCG2, CHPF, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3) 0.0360694158040926 105 0.0370308331088108 1.07983393332325 4521 0.727720066982153 3 3 0 -6.93540625533063 LTS-025 chr2 230096810 243037218 12940409 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, FBXO36, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, NA NA NA NA NA NA NA NA NA LTS-025 ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 UGT1A3, KIF1A, PID1, ATG16L1, PPP1R7, USP40, HJURP, HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SP100, SPP2, SCARNA6, SCARNA5, D2HGDH, LOC728323, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.0396135748732558 415 0.052356270477012 1.02850902787397 12390 0.639524361730522 3 3 0 -6.88278810123236 LTS-025 NA NA NA NA LTS-025 chr3 239351 418089 178739 * CHL1 0.39 1 NA 1.12513677830105 67 0.177328072052754 4 4 0 -5.79409554363095 LTS-025 chr3 418090 3084147 2666058 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6) 0.281187936982031 12 0.233184070223634 1.13924434316498 394 0.432358867512372 4 3 1 -6.79199364367576 LTS-025 chr3 3084148 3098356 14209 * CNTN4 0 1 NA 1.0611748428366 29 0.691515247437411 3 3 0 -5.76466701226561 LTS-025 chr3 3098357 4461872 1363516 * c(CNTN4, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.101578409911768 7 0.225019046812867 1.07809931062645 461 0.505307357449686 3 3 0 -6.84294504999046 LTS-025 chr3 4461873 4699916 238044 * c(SUMF1, ITPR1) 0.12819833559343 2 0.308298556597335 0.970077251900719 80 0.277600057226492 3 3 0 -6.7885237425267 LTS-025 chr3 4699917 4767262 67346 * ITPR1 0.496 1 NA 1.00610501286796 155 0.242422647646968 3 3 0 -5.76747217324158 LTS-025 chr3 4767263 5253052 485790 * c(EGOT, BHLHE40-AS1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.433012416830321 2 0.00777817459305203 0.933094657561717 413 0.271096040634759 4 2 2 -15.1129390132767 LTS-025 chr3 5253053 5255026 1974 * EDEM1 NA 0 NA 1.338 1 NA NA NA NA NA LTS-025 chr3 5255027 8809763 3554737 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.397906212036005 22 0.161037497985953 1.12829531923701 581 0.339982361429894 4 2 2 -6.90124200933554 LTS-025 chr3 8809764 8810050 287 * OXTR 0.473 1 NA 1.0598203682213 5 0.22828972819643 3 3 0 -5.7644565770155 LTS-025 chr3 8810051 8922597 112547 * c(OXTR, RAD18) 0 1 NA 1.02144603920387 89 0.268847136280851 3 3 0 -5.7706679011621 LTS-025 chr3 8922598 9091151 168554 * c(RAD18, SRGAP3) 0.19333331386569 9 0.247647655169822 1.0281702105225 283 0.396075259619128 4 3 1 -6.803193875306 LTS-025 chr3 9091152 9406661 315510 * c(SRGAP3-AS3, THUMPD3, THUMPD3-AS1, SRGAP3) 0.5 1 NA 0.988347442657161 61 0.345129232942812 3 3 0 -5.76821486805003 LTS-025 chr3 9406662 10967739 1561078 * c(MIR885, GHRLOS, ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, FANCD2OS, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, LINC00606, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, GHRL, SETD5, EMC3, BRK1, CIDEC, SEC13, MTMR14, SLC6A11, VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, TATDN2) 0.373240299306502 63 0.177974321718017 1.00425657141212 2763 0.291695600511414 3 2 1 -6.81401543281848 LTS-025 chr3 10967740 10980597 12858 * SLC6A11 0 1 NA 1.21220058601275 37 0.877067594068191 4 4 0 -5.76441375290792 LTS-025 chr3 10980598 11080229 99632 * c(SLC6A1-AS1, SLC6A1) 0.175327837150448 9 0.231077908939821 1.19607974662652 153 0.657162013199719 6 5 1 -6.75821008810846 LTS-025 chr3 11080230 11300707 220478 * c(HRH1, SLC6A1) 0.475 1 NA 1.12077671680865 17 0.301331444933784 4 4 0 -5.77820244863464 LTS-025 chr3 11300708 12861608 1560901 * c(MKRN2OS, ATG7, TAMM41, CAND2, MKRN2, HRH1, PPARG, TMEM40, RAF1, SYN2, TIMP4, TSEN2, VGLL4) 0.313791567376672 23 0.213052842820724 1.02634076069874 1117 0.319740521891852 3 2 1 -6.80459524542172 LTS-025 chr3 12861609 12876130 14522 * CAND2 0 1 NA 1.0401398288988 43 0.363978144537549 3 3 0 -5.76506798183761 LTS-025 chr3 12876131 12913364 37234 * c(CAND2, RPL32) 0 1 NA 0.986866041238317 69 0.328781972860054 3 3 0 -5.76487528530214 LTS-025 chr3 12913365 13671418 758054 * c(FBLN2, NUP210, HDAC11, IQSEC1) 0.154128535320347 26 0.176391313234568 1.51889489037119 606 0.752389299680697 6 5 1 -6.77566068926877 LTS-025 chr3 13671419 13858799 187381 * c(FBLN2, LINC00620) 0.366 1 NA 1.77863252241785 61 0.630887684097063 6 6 0 -5.76458980889596 LTS-025 chr3 13858800 14489690 630891 * c(FGD5P1, CHCHD4, LSM3, TPRXL, SLC6A6, WNT7A, XPC, TMEM43) 0.227254872935956 4 0.172082102497616 1.48512225172879 482 0.369113543434526 5 4 1 -6.73787426921785 LTS-025 chr3 14489691 14489694 4 * SLC6A6 NA 0 NA 0.64 1 NA NA NA NA NA LTS-025 chr3 14489695 15311325 821631 * c(FGD5-AS1, SH3BP5-AS1, FGD5, CAPN7, COL6A4P1, CCDC174, RBSN, MRPS25, SLC6A6, NR2C2, GRIP2, C3orf20, SH3BP5) 0.272354788631589 25 0.231799396030274 1.03602259986788 1212 0.364232681551727 3 2 1 -6.80419905827044 LTS-025 chr3 15311326 15425620 114295 * SH3BP5 0 1 NA 0.997384707848345 31 0.263527440369987 3 3 0 -5.76773544232929 LTS-025 chr3 15425621 16260957 835337 * c(MIR4270, GALNT15, METTL6, ANKRD28, HACL1, BTD, MIR563, COLQ, EAF1) 0.0659349864590142 13 0.176023891152338 0.969132727741681 711 0.403126408239631 3 3 0 -6.75359780916409 LTS-025 chr3 16260958 16269316 8359 * GALNT15 0.465 1 NA 0.972310464992667 28 0.355308056219972 3 3 0 -5.76445231149794 LTS-025 chr3 16269317 20194423 3925107 * c(MIR3714, MIR4791, GALNT15, KCNH8, PP2D1, EFHB, DAZL, RFTN1, PLCL2, DPH3, LOC339862, RAB5A, SATB1, KAT2B, OXNAD1, TBC1D5) 0.35088324722969 50 0.196968705688006 1.01155946984201 1379 0.443168311908691 3 2 1 -6.80146133633709 LTS-025 chr3 20194424 20210999 16576 * c(SGO1, KAT2B) 0 1 NA 1.06204558313623 43 0.541859967894106 3 3 0 -5.76490487078439 LTS-025 chr3 20211000 24160743 3949744 * c(MIR548AC, SGO1-AS1, SGO1, LINC00691, NKIRAS1, VENTXP7, RPL15, THRB, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0.113810281192278 16 0.200708578125932 1.07353651500873 516 0.381218173575682 3 3 0 -7.09306645042328 LTS-025 chr3 24160744 24161493 750 * THRB 0.45 1 NA 1.1627989664661 19 0.347031420792907 4 4 0 -5.76442383944713 LTS-025 chr3 24161494 27332820 3171327 * c(MIR4792, MIR4442, LRRC3B, NEK10, LINC00692, OXSM, NGLY1, RARB, THRB-AS1, THRB, TOP2B) 0.380546456463943 29 0.171650033469696 1.03975630064031 747 0.337495782784504 3 2 1 -6.94576203030047 LTS-025 chr3 27332821 27346310 13490 * NEK10 0 1 NA 1.03103442652045 31 0.38605893750282 3 3 0 -5.76486203638193 LTS-025 chr3 27346311 28566418 1220108 * c(ZCWPW2, CMC1, NEK10, AZI2, EOMES, SLC4A7) 0.172658230437412 11 0.244626691474618 0.976229696866938 618 0.38699712029705 3 3 0 -6.92257968866676 LTS-025 chr3 28566419 29804487 1238069 * c(ZCWPW2, RBMS3, LINC00693) 0.495 1 NA 1.10791058363819 53 0.378868312363554 4 4 0 -5.82522577911753 LTS-025 chr3 29804488 32611639 2807152 * c(OSBPL10-AS1, CMTM7, OSBPL10, CMTM8, STT3B, GPD1L, RBMS3, GADL1, ZNF860, DYNC1LI1, CMTM6, TGFBR2) 0.373845208518467 39 0.16966529724849 1.06198920316825 1081 1.6815869590187 4 2 2 -6.74724615369156 LTS-025 chr3 32611640 32859682 248043 * c(TRIM71, CNOT10, DYNC1LI1) 0 1 NA 1.03675103924263 129 0.629544219108543 3 3 0 -5.76792358077436 LTS-025 chr3 32859683 33853530 993848 * c(PDCD6IP, CRTAP, CCR4, TRIM71, CLASP2, FBXL2, SUSD5, GLB1, TMPPE, UBP1) 0.273269631570221 21 0.226734646668744 1.00976793360916 1049 0.368230160969688 3 2 1 -6.79227228232235 LTS-025 chr3 33853531 33877626 24096 * PDCD6IP 0.49 1 NA 1.10087072062917 33 0.282479437438829 4 4 0 -5.7668190480966 LTS-025 chr3 33877627 35723430 1845804 * c(PDCD6IP, ARPP21) 0.439290903463765 6 0.0397311800311376 0.998169576313783 145 0.222887072801951 4 2 2 -9.08405623653995 LTS-025 chr3 35723431 35724313 883 * ARPP21 NA 0 NA 1.347 1 NA NA NA NA NA LTS-025 chr3 35724314 36588887 864574 * c(ARPP21, MIR128-2, STAC) 0.459045819616109 6 0.0209252638374446 1.1733399878926 248 0.34849750140993 4 2 2 -11.41989660753 LTS-025 chr3 36588888 36755813 166926 * c(STAC, DCLK3) 0 1 NA 1.04626228917944 51 0.416603313458155 3 3 0 -5.7708735505433 LTS-025 chr3 36755814 36873425 117612 * c(DCLK3, TRANK1) 0.177045437725755 3 0.268467875173176 1.22699252205438 141 0.605821113013276 5 4 1 -6.75519804326687 LTS-025 chr3 36873426 37125095 251670 * c(MLH1, LRRFIP2, EPM2AIP1, TRANK1) 0.356590859676549 8 0.214135304355514 1.01830351663839 429 0.347262922055633 3 2 1 -6.74992482864431 LTS-025 chr3 37125096 37144535 19440 * LRRFIP2 0.496 1 NA 0.98301931146115 27 0.274328633996161 3 3 0 -5.7647039058847 LTS-025 chr3 37144536 38051941 907406 * c(CTDSPL, GOLGA4, C3orf35, ITGA9, MIR26A1, VILL, PLCD1, LRRFIP2) 0.375473828565309 24 0.171385482744753 1.04116031679286 886 0.299094611938881 3 2 1 -6.83613934533166 LTS-025 chr3 38051942 38139189 87248 * c(PLCD1, DLEC1) 0 1 NA 1.13790551860041 135 0.712787803985328 4 4 0 -5.76510696732964 LTS-025 chr3 38139190 38348702 209513 * c(ACAA1, MYD88, SLC22A14, SLC22A13, DLEC1, OXSR1) 0.142906616435521 20 0.213518149111498 1.07517380210927 496 0.698743583931802 6 5 1 -6.82499848162819 LTS-025 chr3 38348703 38350519 1817 * SLC22A14 0.413 1 NA 1.17082432565227 9 0.355474252857284 4 4 0 -5.76443502262539 LTS-025 chr3 38350520 38442490 91971 * c(SLC22A14, XYLB) 0.467040382245232 9 0.0258301073254535 1.03245835469301 162 0.304246767517455 4 2 2 -10.8471786887787 LTS-025 chr3 38442491 38454650 12160 * XYLB 0 1 NA 1.15594405346269 11 1.67707430311892 4 4 0 -5.76442161042075 LTS-025 chr3 38454651 38622467 167817 * c(ACVR2B-AS1, SCN5A, ACVR2B, EXOG, XYLB) 0.271334942230166 17 0.22731029582541 1.08701969209195 320 0.693999721294143 4 3 1 -6.73707255627102 LTS-025 chr3 38622468 38628942 6475 * SCN5A 0 1 NA 1.0844492804374 21 0.523249699110327 4 4 0 -5.76465122359084 LTS-025 chr3 38628943 38793832 164890 * c(SCN5A, SCN10A) 0.000923241713224242 9 0.00233333333333333 1.11546690274256 219 1.0795095223709 20 20 0 -10.6935562864013 LTS-025 chr3 38793833 38887970 94138 * c(SCN11A, SCN10A) 0.47 1 NA 1.03042329830534 65 0.199794494178008 3 3 0 -5.7760110952007 LTS-025 chr3 38887971 39323163 435193 * c(SCN11A, CX3CR1, XIRP1, TTC21A, WDR48, CSRNP1, GORASP1) 0.3582791327664 15 0.193950975641735 1.01746960122597 881 0.371090346622647 3 2 1 -6.75712691389842 LTS-025 chr3 39323164 39438316 115153 * c(CCR8, CX3CR1, SLC25A38) 0 1 NA 0.961823102130827 77 0.343330242627113 3 3 0 -5.76468715417621 LTS-025 chr3 39438317 40470000 1031684 * c(EIF1B, MYRIP, ENTPD3-AS1, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, ENTPD3) 0.261421527224155 10 0.241213229782743 1.02346365534777 384 0.713893293396122 4 3 1 -6.77583208650874 LTS-025 chr3 40470001 40498845 28845 * c(ENTPD3-AS1, RPL14, ENTPD3) 0.449 1 NA 0.644295299392342 5 0.335345642583887 2 2 0 -5.76441250810249 LTS-025 chr3 40498846 42253346 1754501 * c(CTNNB1, TRAK1, ZNF620, ZNF619, ZNF621, ULK4, RPL14) 0.44778841608772 13 0.0584843831883613 1.06123112627047 745 0.352619277862337 4 2 2 -7.86340099698398 LTS-025 chr3 42253347 42253427 81 * TRAK1 0 1 NA 2.362 1 NA NA NA NA NA LTS-025 chr3 42253428 42591267 337840 * c(LYZL4, TRAK1, VIPR1, CCK, SEC22C) 0.298671918144723 11 0.228951285012971 1.13273117917284 260 0.409712623122822 4 3 1 -6.75582076612394 LTS-025 chr3 42591268 42591403 136 * SEC22C 0.461 1 NA 0.720835547602636 3 0.42732189272257 2 2 0 -5.76441533994622 LTS-025 chr3 42591404 42700456 109053 * c(NKTR, SS18L2, SEC22C, ZBTB47) 0.469131022349689 13 0.0230041802221315 1.00405158149668 360 0.259022809973081 4 2 2 -11.501454324191 LTS-025 chr3 42700457 42701305 849 * ZBTB47 0 1 NA 1.18171162929862 15 1.25591248557715 4 4 0 -5.76441077251936 LTS-025 chr3 42701306 43123076 421771 * c(KRBOX1, CCDC13-AS1, ACKR2, KLHL40, CCDC13, CYP8B1, HIGD1A, ZNF662, HHATL, FAM198A, POMGNT2, ZBTB47) 0.250426063922994 19 0.236315306268147 1.0683540121141 789 0.735334879451234 4 3 1 -6.74488299628474 LTS-025 chr3 43123077 43591327 468251 * c(SNRK-AS1, SNRK, ANO10, POMGNT2) 0.484 1 NA 1.04344686751405 155 0.294618447448348 3 3 0 -5.79868216784056 LTS-025 chr3 43591328 44641169 1049842 * c(TCAIM, ZNF660, ZNF445, TOPAZ1, MIR138-1, ABHD5, ANO10, ZKSCAN7) 0.381367939660038 23 0.198049191398094 1.01480731306311 825 0.284958444103938 3 2 1 -6.81661998136681 LTS-025 chr3 44641170 44670596 29427 * ZNF197 0 1 NA 1.2853214300528 7 1.0303793337546 4 4 0 -5.76443618190034 LTS-025 chr3 44670597 45125541 454945 * c(ZNF197, ZNF501, TMEM42, EXOSC7, ZDHHC3, KIF15, KIAA1143, CDCP1, MIR564, TGM4, CLEC3B, ZNF35, ZNF502) 0.160065620348526 26 0.207718259632165 1.01645629754906 1016 0.437526559650848 4 3 1 -6.93348059716959 LTS-025 chr3 45125542 45130609 5068 * CDCP1 0.425 1 NA 0.98113820802361 45 0.221672481126749 3 3 0 -5.76451732107537 LTS-025 chr3 45130610 45804391 673782 * c(LARS2-AS1, SACM1L, LARS2, TMEM158, SLC6A20, LIMD1-AS1, CDCP1, LIMD1) 0.429216123375603 22 0.101963334807281 1.00149372633021 678 0.329204915999727 4 2 2 -7.09918859110215 LTS-025 chr3 45804392 45807144 2753 * SLC6A20 0 1 NA 1.33346665692601 7 1.75768490864979 4 4 0 -5.76441325018803 LTS-025 chr3 45807145 45962501 155357 * c(CCR9, LZTFL1, SLC6A20, FYCO1) 0.132352232319982 10 0.23595020661148 1.03959960396397 296 0.691391233150004 6 5 1 -6.82135673712032 LTS-025 chr3 45962502 45962595 94 * FYCO1 0.438 1 NA 1.07688163172023 3 0.372535904309907 3 3 0 -5.76441743351531 LTS-025 chr3 45962596 46021218 58623 * c(CXCR6, FYCO1) 0.474944664797478 12 0.0289747800472735 1.01836030208374 224 0.251766937756548 4 2 2 -10.6815001347718 LTS-025 chr3 46021219 46058576 37358 * FYCO1 0 1 NA 1.10733542079367 21 0.777057842426283 4 4 0 -5.76485499088803 LTS-025 chr3 46058577 46488817 430241 * c(CCR1, CCR3, CCR5, XCR1, LTF, CCR2, CCRL2) 0.19751209323706 10 0.237608080670671 1.00321595867679 440 0.420810956271827 4 3 1 -6.8422309120223 LTS-025 chr3 46488818 46539523 50706 * c(LTF, RTP3) 0.477 1 NA 0.986800168798446 81 0.230167004585801 3 3 0 -5.76569886992691 LTS-025 chr3 46539524 46654132 114609 * c(LOC100132146, TDGF1, LRRC2, RTP3, LRRC2-AS1) 0.394887950925453 10 0.144561751511249 0.980253787525982 188 0.413479657415417 4 2 2 -6.77453780346757 LTS-025 chr3 46654133 46666793 12661 * LOC100132146 0.454 1 NA 1.1307988437409 17 0.232844968620249 4 4 0 -5.76550746286734 LTS-025 chr3 46666794 46730749 63956 * c(LOC100132146, ALS2CL) 0.241113542065937 9 0.245538750053383 1.19908692755377 159 0.706302775063848 4 3 1 -6.73831919048224 LTS-025 chr3 46730750 46751387 20638 * c(ALS2CL, TMIE) 0 1 NA 1.11234792321911 29 0.493268437295077 4 4 0 -5.7649707076056 LTS-025 chr3 46751388 47035950 284563 * c(PRSS46, CCDC12, NBEAL2, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.0401841150213418 9 0.161333333333333 1.12234573996021 462 0.502625667070097 4 4 0 -6.74266624979283 LTS-025 chr3 47035951 47045739 9789 * NBEAL2 0.449 1 NA 1.13452934592065 149 0.241092054308023 4 4 0 -5.7651437227866 LTS-025 chr3 47045740 47891513 845774 * c(NRADDP, MIR1226, CSPG5, DHX30, SCAP, NBEAL2, KLHL18, PTPN23, KIF9-AS1, SETD2, ELP6, KIF9, SMARCC1) 0.253291913145368 25 0.24104126894234 1.04681672566898 1360 0.384684791673857 4 3 1 -6.82690292493617 LTS-025 chr3 47891514 47892579 1066 * c(DHX30, MAP4) 0.475 1 NA 1.11147779057241 15 0.14579153414575 4 4 0 -5.76474626325517 LTS-025 chr3 47892580 48040283 147704 * MAP4 0.422513689073194 9 0.161265395475216 1.0327905286886 323 0.349822331993963 4 2 2 -6.82295780284197 LTS-025 chr3 48040284 48265900 225617 * c(MIR4443, MAP4, CAMP, CDC25A) 0 1 NA 1.01568542514468 135 0.266794348992825 3 3 0 -5.77544092370868 LTS-025 chr3 48265901 48510210 244310 * c(NME6, TREX1, FBXW12, SHISA5, TMA7, ZNF589, PLXNB1, SPINK8, CCDC51, CAMP, ATRIP) 0.310952144163098 18 0.22271184377908 1.03411675429872 713 0.358056426768828 3 2 1 -6.7476194465265 LTS-025 chr3 48510211 48555514 45304 * c(SHISA5, PFKFB4) 0 1 NA 1.00798497046115 89 0.544888022297901 3 3 0 -5.76484116962593 LTS-025 chr3 48555515 48667921 112407 * c(MIR711, COL7A1, CELSR3, TMEM89, PFKFB4, SLC26A6, UQCRC1, UCN2) 0.0769210870295244 17 0.197148589080598 1.06303987520545 728 0.56954808558606 3 3 0 -6.76252031568792 LTS-025 chr3 48667922 48668394 473 * c(CELSR3, SLC26A6) 0.477 1 NA 0.914895434102044 9 0.435527107205867 3 3 0 -5.76441132873696 LTS-025 chr3 48668395 49293549 625155 * c(MIR4793, ARIH2, USP19, WDR6, CELSR3, KLHDC8B, LAMB2P1, NDUFAF3, CCDC36, IMPDH2, LAMB2, MIR191, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, ARIH2OS, C3orf84, CCDC71, SLC26A6, SLC25A20) 0.311586382233866 37 0.226968244660094 1.04229911977825 2026 0.313671037185551 3 2 1 -6.77651943314712 LTS-025 chr3 49293550 49294250 701 * CCDC36 0.456 1 NA 0.83913385914991 15 0.104269887905423 3 3 0 -5.76491849641576 LTS-025 chr3 49294251 49572140 277890 * c(MIR4271, DAG1, AMT, GPX1, CCDC36, C3orf62, RHOA, TCTA, USP4, NICN1) 0.462977363762653 16 0.0254112835829545 1.00255688553683 652 0.266518612074849 4 2 2 -10.8145807159634 LTS-025 chr3 49572141 49680040 107900 * c(BSN-AS2, DAG1, BSN) 0 1 NA 1.17475744511993 39 0.546432824150455 4 4 0 -5.76496019388949 LTS-025 chr3 49680041 49700495 20455 * BSN 0.0803118584180369 10 0.187848165637393 1.12655271713684 220 0.920562803651657 2 2 0 -6.75336548157021 LTS-025 chr3 49700496 49701983 1488 * BSN 0.454 1 NA 0.929241262141726 25 0.271348637979507 3 3 0 -5.76441209577753 LTS-025 chr3 49701984 52430526 2728543 * c(LINC00696, PARP3, IQCF4, ABHD14A-ACY1, MIR4787, RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DOCK3, DUSP7, ALAS1, RAD54L2, NAT6, ABHD14A, POC1A, DNAH1, GNAI2, GNAT1, GRM2, RBM15B, GMPPB, APEH, HYAL1, AMIGO3, CDHR4, FAM212A, IQCF2, IQCF5, IQCF3, MIRLET7G, MIR135A1, IQCF6, MST1, MST1R, C3orf18, ZMYND10, TEX264, NA NA NA NA NA NA NA NA NA LTS-025 HEMK1, TLR9, PCBP4, RPL29, RNF123, SEMA3F, UBA7, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, WDR82, HYAL3, MON1A, ABHD14B, HYAL2, BSN, RRP9, CACNA2D2, ACY1, DCAF1, IP6K1) 0.271142579812006 84 0.224621812591544 1.05920829943196 5589 0.367083120683543 3 2 1 -6.93923932022959 LTS-025 NA NA NA NA LTS-025 chr3 52430527 52433057 2531 * DNAH1 0 1 NA 1.22391398695617 27 1.11954410491459 4 4 0 -5.76441024117491 LTS-025 chr3 52433058 52557482 124425 * c(NISCH, STAB1, DNAH1, PHF7, SEMA3G, TNNC1, BAP1) 0.0869223608689544 15 0.200407869819811 1.07364999759731 837 0.487594395808959 3 3 0 -6.77776464098011 LTS-025 chr3 52557483 52584715 27233 * c(STAB1, SMIM4, PBRM1, NT5DC2) 0.454 1 NA 1.07306040271374 209 0.243998730477821 3 3 0 -5.76912911317556 LTS-025 chr3 52584716 52825585 240870 * c(SNORD19B, GNL3, SPCS1, ITIH1, PBRM1, GLT8D1, NEK4, SNORD19, SNORD69) 0.379005988069439 20 0.168203033641834 0.956375246047558 548 0.324393988555038 3 2 1 -6.78356707981737 LTS-025 chr3 52825586 52838665 13080 * c(ITIH1, ITIH3) 0 1 NA 1.10525327230929 71 0.321909067105774 4 4 0 -5.76534906314032 LTS-025 chr3 52838666 52852588 13923 * c(ITIH3, ITIH4) 0.0425139670087906 9 0.166666666666667 1.08976638677676 85 0.784647755543921 3 3 0 -6.7343931093478 LTS-025 chr3 52852589 52853401 813 * ITIH4 0.449 1 NA 1.19386563446717 5 0.474414586622292 4 4 0 -5.76441267183817 LTS-025 chr3 52853402 52874296 20895 * c(TMEM110-MUSTN1, ITIH4, TMEM110, MUSTN1) 0.427305899883081 11 0.143925548935426 1.03497111740866 213 0.316896262115081 4 2 2 -6.83574765351951 LTS-025 chr3 52874297 52874429 133 * c(TMEM110-MUSTN1, TMEM110) 0 1 NA 0.913987507958431 5 0.968756522558687 3 3 0 -5.7644102069684 LTS-025 chr3 52874430 53123143 248714 * c(TMEM110-MUSTN1, TMEM110, SFMBT1, RFT1) 0.212698850584289 9 0.248087182256561 1.00421638973494 215 0.386984788256721 4 3 1 -6.80109253325961 LTS-025 chr3 53123144 53133368 10225 * RFT1 0.478 1 NA 0.985272825613151 69 0.267847607007623 3 3 0 -5.76458971221054 LTS-025 chr3 53133369 54596934 1463566 * c(CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, SELENOK, TKT, CACNA1D, RFT1, ACTR8) 0.347387235085695 32 0.193765485853556 1.04771047233725 940 0.423400981795191 3 2 1 -6.79361567122835 LTS-025 chr3 54596935 55504616 907682 * c(CACNA2D3-AS1, CACNA2D3, LRTM1, WNT5A, ESRG) 0.294430174411668 12 0.248591121029182 1.18303008952536 324 0.39750602710581 4 3 1 -6.74846161062176 LTS-025 chr3 55504617 55508380 3764 * WNT5A NA 0 NA 0.985 1 NA NA NA NA NA LTS-025 chr3 55508381 58280081 2771701 * c(MIR3938, ARHGEF3-AS1, ASB14, DNASE1L3, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, IL17RD, ABHD6, ERC2-IT1, WNT5A, SLMAP, HESX1) 0.336976366821834 42 0.198572883081931 1.00412478418906 2488 0.294581627118727 3 2 1 -6.8131022362018 LTS-025 chr3 58280082 58280311 230 * ABHD6 0.485 1 NA 0.987114908705711 5 0.404284182228293 3 3 0 -5.76441204706196 LTS-025 chr3 58280312 58484521 204210 * c(RPP14, KCTD6, PDHB, PXK, ABHD6) 0.449028434975265 18 0.0399383920983143 0.99475501702235 294 0.256302847703893 4 2 2 -8.60729059249769 LTS-025 chr3 58484522 58490866 6345 * c(KCTD6, ACOX2) 0 1 NA 1.01027888819046 31 0.356525147282995 3 3 0 -5.76456062586694 LTS-025 chr3 58490867 58629542 138676 * c(FAM107A, FAM3D, ACOX2) 0.34394482032717 8 0.213174936546088 0.983934749168002 217 0.277390413420483 3 2 1 -6.73767630049213 LTS-025 chr3 58629543 58631202 1660 * FAM3D NA 0 NA 1.214 1 NA NA NA NA NA LTS-025 chr3 58631203 63662203 5031001 * c(PTPRG-AS1, SYNPR-AS1, FAM3D, SNTN, SYNPR, C3orf67, FHIT, LINC00698, FEZF2, C3orf14, PTPRG, CADPS) 0.250319361906106 18 0.242504821055776 1.11370619982818 1030 0.428879883495434 4 3 1 -6.90655416973187 LTS-025 chr3 63662204 63663854 1651 * character(0) 0.378 1 NA 1.29398202357199 35 0.379152908113722 4 4 0 -5.76442489230998 LTS-025 chr3 63663855 65355591 1691737 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, PRICKLE2, ADAMTS9, ATXN7, MIR548A2, THOC7, MAGI1, PSMD6) 0.444500189349399 10 0.0382920067086824 1.13691716045195 809 0.280276829696738 4 2 2 -8.56695003601014 LTS-025 chr3 65355592 65357528 1937 * MAGI1 NA 0 NA 0.782 1 NA NA NA NA NA LTS-025 chr3 65357529 74312179 8954651 * c(MIR1284, MIR3136, MIR4272, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.404071845939562 34 0.154439706664615 1.04535300768121 2601 0.299849612793139 3 2 1 -7.46320314413229 LTS-025 chr3 74312180 74413676 101497 * CNTN3 0.459393664412049 2 0.0381837661840735 1.17677655211516 94 0.261641958215397 4 2 2 -9.01107562966863 LTS-025 chr3 74413677 74420528 6852 * CNTN3 0 1 NA 1.13641116623178 25 0.558897688907967 4 4 0 -5.76450201033964 LTS-025 chr3 74420529 75714311 1293783 * c(MIR1324, CNTN3, FAM86DP) 0.195807016837128 9 0.1167615090687 1.32591077294429 41 0.454940918168931 5 4 1 -6.82728088447519 LTS-025 chr3 75714312 75714663 352 * character(0) 0.404 1 NA 1.20746053638437 6 0.504313692060804 4 4 0 -5.76441056937757 LTS-025 chr3 75714664 78676422 2961759 * c(ZNF717, ROBO1, ROBO2) 0.305418106111015 200 0.122363200613263 1.2799201146727 624 0.801460823289031 4 3 1 -6.80436561024077 LTS-025 chr3 78676423 78735088 58666 * ROBO1 NA 0 NA 1.25804119588553 95 0.385187831902132 4 NA NA -5.76448805827244 LTS-025 chr3 78735089 78737771 2683 * ROBO1 NA 0 NA 0.991 1 NA NA NA NA NA LTS-025 chr3 78737772 78737962 191 * ROBO1 0.493 1 NA 1.06699349932025 3 0.124949323060725 3 3 0 -5.76452515770184 LTS-025 chr3 78737963 86992222 8254260 * c(MIR5688, CADM2-AS2, CADM2, GBE1, VGLL3, LINC00971, ROBO1) 0.465417424988239 9 0.0280391591251315 1.07770457152368 397 0.356541383910524 4 2 2 -11.0496644241183 LTS-025 chr3 86992223 86993653 1431 * VGLL3 0 1 NA 1.0099464456725 31 0.27399811238656 3 3 0 -5.76446703751994 LTS-025 chr3 86993654 89530450 2536797 * c(MIR4795, EPHA3, CHMP2B, C3orf38, HTR1F, VGLL3, POU1F1, ZNF654, CGGBP1) 0.16968296303312 15 0.232603422977721 1.06910261731939 793 0.350486612584784 4 3 1 -7.07868689301835 LTS-025 chr3 89530451 90283666 753216 * EPHA3 NA 0 NA 1.1431892092377 41 0.347419399320749 4 NA NA -5.78687865109452 LTS-025 chr3 93591838 93768268 176431 * c(ARL13B, STX19, PROS1) 0.404 1 NA 1.04646218936552 159 0.284930729300931 3 3 0 -5.77904718999727 LTS-025 chr3 93768269 97664459 3896191 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, LINC00879, EPHA6, NSUN3, ARL6, MINA) 0.183421870000383 24 0.209746426443449 1.07524342190111 718 0.660510235765379 4 3 1 -6.92197609490229 LTS-025 chr3 97664460 97664725 266 * MINA 0.495 1 NA 1.242263302424 7 0.118071608619112 4 4 0 -5.76441047999612 LTS-025 chr3 97664726 100617680 2952955 * c(MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, DCBLD2, CPOX, GABRR3, ABI3BP, OR5K1, OR5H1, GPR15, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, TMEM45A, TBC1D23, CLDND1, NIT2, TMEM30CP, OR5H6, OR5H2, OR5AC2, CMSS1, MINA, ADGRG7, TOMM70) 0.381538098865283 33 0.173714106822362 1.01795713036943 1886 0.337402171404031 3 2 1 -6.8793854244468 LTS-025 chr3 100617681 100621386 3706 * ABI3BP 0 1 NA 1.0840949687004 7 0.457323320034764 4 4 0 -5.76459166237617 LTS-025 chr3 100621387 101578810 957424 * c(ZBTB11-AS1, FAM172BP, ABI3BP, ZBTB11, PDCL3P4, IMPG2, TRMT10C, PCNP, SENP7, RPL24, NFKBIZ, CEP97, NXPE3) 0.283149207799241 5 0.247469190001503 1.01526731896072 976 0.279035521623428 3 2 1 -6.7967146133494 LTS-025 chr3 101578811 107097555 5518745 * c(LINC00882, ZPLD1, LOC152225, ALCAM, DUBR, NFKBIZ, MIR548A3, CCDC54, CBLB) 0.240502555010407 6 0.195535589258494 1.49796625428043 425 0.442916885547136 5 4 1 -6.74960553832184 LTS-025 chr3 107097556 107378498 280943 * BBX NA 0 NA 1.845 1 NA NA NA NA NA LTS-025 chr3 107378499 107765392 386894 * c(LINC00635, LINC00636, BBX, CD47) 0.228985346032282 6 0.128021352385712 1.76452544297983 334 0.538248051082802 5 4 1 -6.75516028435973 LTS-025 chr3 107765393 107769316 3924 * CD47 0 1 NA 1.73279946524752 21 0.356810680760487 6 6 0 -5.76445884183719 LTS-025 chr3 107769317 107770756 1440 * CD47 NA 0 NA 1.74582221806566 11 0.36106650105184 6 NA NA -5.76442286334591 LTS-025 chr3 107770757 107774305 3549 * CD47 NA 0 NA 1.52 1 NA NA NA NA NA LTS-025 chr3 107774306 108269838 495533 * c(HHLA2, MYH15, IFT57, KIAA1524, CD47) 0.0577410195330932 9 0.144187763388961 1.48361028493151 465 0.533140423726083 5 5 0 -6.76780516826807 LTS-025 chr3 108269839 108295067 25229 * KIAA1524 0.242 1 NA 1.55055377936687 63 0.632915190205474 5 5 0 -5.76441702651019 LTS-025 chr3 108295068 108725984 430917 * c(MORC1, TRAT1, KIAA1524, RETNLB, GUCA1C, DZIP3) 0.326145641647139 18 0.121741878445013 1.5484528858806 394 0.690486932852936 6 4 2 -6.74756354856527 LTS-025 chr3 108725985 109031630 305646 * c(DPPA2, MORC1, FLJ22763, LINC00488) 0 1 NA 1.54541249441568 117 0.652438414536381 5 5 0 -5.76445481382201 LTS-025 chr3 109031631 111369088 2337458 * c(PVRL3-AS1, CD96, DPPA2, NECTIN3, LINC01205, DPPA4, ZBED2) 0.142810128093576 9 0.192994458757528 1.48756428473753 427 0.672752017508142 5 4 1 -6.8213234992348 LTS-025 chr3 111369089 111602828 233740 * c(CD96, PLCXD2, PHLDB2) 0.341 1 NA 1.38976825452483 97 0.322088949262643 5 5 0 -5.77683531376043 LTS-025 chr3 111602829 112935138 1332310 * c(CD200R1, CCDC80, BTLA, GCSAM, NEPRO, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, CD200, SLC35A5, ABHD10, ATG3, MIR567, C3orf52, PHLDB2, BOC) 0.319444472367156 41 0.125136276933901 1.43930378251142 1586 0.447196928789112 5 3 2 -6.81040216221077 LTS-025 chr3 112935139 113004406 69268 * BOC 0 1 NA 1.63030806010206 121 0.450966509968254 5 5 0 -5.76523824565879 LTS-025 chr3 113004407 114027216 1022810 * c(MIR4446, CFAP44-AS1, SPICE1, DRD3, TIGIT, USF3, ZDHHC23, ATP6V1A, GRAMD1C, SIDT1, CFAP44, CCDC191, ZNF80, QTRT2, NAA50, BOC) 0.128516661494926 23 0.17684747006385 1.47024340663946 1567 0.49424687517576 5 4 1 -6.88144283469057 LTS-025 chr3 114027217 114028391 1175 * TIGIT 0.329 1 NA 1.46667117026965 25 0.500050830749568 5 5 0 -5.76441513036164 LTS-025 chr3 114028392 119813282 5784891 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, COX17, ADPRH, IGSF11, C3orf30, TIGIT, GAP43, ZBTB20, TUSC7, GSK3B, LSAMP, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, MIR568, UPK1B, B4GALT4, NR1I2, MAATS1, CD80) 0.271470403891083 56 0.125017977927956 1.43378985219541 1784 0.456773544773904 5 4 1 -6.91648939472933 LTS-025 chr3 119813283 119884825 71543 * GPR156 0 1 NA 1.8310051395478 13 2.14621286013891 6 6 0 -5.76441026915597 LTS-025 chr3 119884826 121346446 1461621 * c(POLQ, FSTL1, LRRC58, GPR156, RABL3, GTF2E1, HGD, MIR198, NDUFB4, ARGFX, FBXO40, STXBP5L) 0.203400453984723 38 0.171058509035691 1.51888285607493 1270 0.572627726607001 5 4 1 -6.73660095459083 LTS-025 chr3 121346447 121346930 484 * FBXO40 0.369 1 NA 1.42472591300562 11 0.336270805371883 5 5 0 -5.76442310034189 LTS-025 chr3 121346931 121647286 300356 * c(GOLGB1, HCLS1, FBXO40, EAF2, SLC15A2, IQCB1) 0.355469791831251 17 0.0537301947095803 1.5177266641206 611 0.357160169828715 5 3 2 -6.73749988113882 LTS-025 chr3 121647287 121648168 882 * SLC15A2 0.359 1 NA 1.34933817508895 9 0.161882673563294 4 4 0 -5.76456698098249 LTS-025 chr3 121648169 122005131 356963 * c(ILDR1, SLC15A2, CASR, CD86) 0.183810988924132 9 0.192269414566586 1.45623302267486 355 1.21780514915817 6 5 1 -6.7403620662623 LTS-025 chr3 122005132 122056863 51732 * c(CSTA, CASR) 0.402 1 NA 1.38808947450062 21 0.202893638568164 5 5 0 -5.77152215487597 LTS-025 chr3 122056864 122056910 47 * CSTA NA 0 NA 1.47576968584057 2 0.514773736703807 5 NA NA -5.76441026909125 LTS-025 chr3 122056911 122296647 239737 * c(CCDC58, CSTA, DTX3L, PARP15, FAM162A, KPNA1, WDR5B, PARP9) 0.43637093381026 18 0.111669051774352 1.01369767556917 644 0.259022408782149 4 2 2 -7.03013106325135 LTS-025 chr3 122296648 122419727 123080 * c(PARP15, PARP14) 0 1 NA 1.05761831133132 161 0.526789124707352 3 3 0 -5.76803111547033 LTS-025 chr3 122419728 122865136 445409 * c(LOC100129550, PDIA5, SEMA5B, PARP14, HSPBAP1, DIRC2) 0.325932774397907 20 0.217053201094255 1.06152110451003 521 0.453268193625069 3 2 1 -6.75204406924555 LTS-025 chr3 122865137 122927908 62772 * c(PDIA5, SEC22A) 0 1 NA 1.06369563490106 29 0.341148332443622 3 3 0 -5.76925562377095 LTS-025 chr3 122927909 123286704 358796 * c(ADCY5, HACD2, SEC22A) 0.191088228852357 10 0.233011420797827 1.07686057494403 386 0.435542268357204 4 3 1 -6.81259638752179 LTS-025 chr3 123286705 123340815 54111 * c(MYLK-AS1, HACD2, MYLK) 0.449 1 NA 1.06257147212457 147 0.324174183601887 3 3 0 -5.76895658048528 LTS-025 chr3 123340816 124450321 1109506 * c(MYLK-AS1, MIR5002, MYLK, ROPN1, CCDC14, UMPS, KALRN) 0.372181165596473 31 0.181569809436824 1.11391348460533 957 0.365755998439048 4 2 2 -6.78617941683675 LTS-025 chr3 124450322 124451284 963 * UMPS 0.486 1 NA 1.01934059209116 9 0.216983742350537 3 3 0 -5.7644882435461 LTS-025 chr3 124451285 124716535 265251 * c(ITGB5, MUC13, HEG1, UMPS) 0.211541884785292 9 0.24726391658397 1.03265825450654 381 0.358614929982887 4 3 1 -6.79946374925152 LTS-025 chr3 124716536 124728626 12091 * HEG1 0.488 1 NA 0.958059885916501 23 0.166098178024574 3 3 0 -5.76449362956044 LTS-025 chr3 124728627 125223456 494830 * c(MIR5092, HEG1, ZNF148, SLC12A8, SNX4) 0.405370868994683 23 0.164021243683392 1.0120489030121 511 0.339471052853426 4 2 2 -6.86411454074052 LTS-025 chr3 125223457 125279208 55752 * c(OSBPL11, SNX4) 0 1 NA 1.02572005944203 81 0.349094743763719 3 3 0 -5.76644236057612 LTS-025 chr3 125279209 126181050 901842 * c(FAM86JP, MIR548I1, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, OSBPL11, ROPN1B, ALG1L, KLF15, CFAP100, SLC41A3, ZXDC) 0.184317384290357 19 0.238682335563279 1.09175341331745 541 0.557329314570705 4 3 1 -6.82572761101413 LTS-025 chr3 126181051 126211282 30232 * c(UROC1, ZXDC) 0.485 1 NA 0.875711169941565 81 0.307133726957115 3 3 0 -5.76540827490463 LTS-025 chr3 126211283 126741041 529759 * c(TXNRD3, UROC1, C3orf22, CHST13, NUP210P1, PLXNA1, TXNRD3NB, CHCHD6) 0.406935127316011 18 0.15151061784661 1.10967965397514 508 0.408201964194054 4 2 2 -6.79346941897794 LTS-025 chr3 126741042 126747126 6085 * PLXNA1 0 1 NA 1.07889061401717 21 0.646097784873968 4 4 0 -5.76457068247912 LTS-025 chr3 126747127 127703252 956126 * c(MGLL, TPRA1, KBTBD12, MCM2, PODXL2, PLXNA1, ABTB1) 0.173727009572116 10 0.244576641021446 1.09056178687676 639 0.350114795900188 4 3 1 -6.88567560498957 LTS-025 chr3 127703253 127705800 2548 * KBTBD12 0.442 1 NA 1.12901783477938 47 0.166893414057818 4 4 0 -5.76485534671046 LTS-025 chr3 127705801 128695828 990028 * c(DNAJB8, KBTBD12, LINC01565, GATA2, DNAJB8-AS1, ACAD9, SEC61A1, KIAA1257, EEFSEC, RPN1, LOC653712, RAB7A, RUVBL1, LOC90246) 0.379670769047566 28 0.167066421382153 1.02498404095413 812 0.385593811456911 3 2 1 -6.81423186131361 LTS-025 chr3 128695829 128695959 131 * KIAA1257 0 1 NA 1.30697703638255 3 1.64659679338932 4 4 0 -5.76441022578932 LTS-025 chr3 128695960 128969430 273471 * c(ISY1-RAB43, COPG1, GP9, RAB43, ISY1, KIAA1257, CNBP, EFCC1) 0.194595018405351 9 0.232174922083425 0.971519461122195 355 0.326250636485134 4 3 1 -6.87395450048851 LTS-025 chr3 128969431 128971113 1683 * COPG1 0.474 1 NA 1.18549944945679 9 0.143125818774951 4 4 0 -5.76449403519525 LTS-025 chr3 128971114 129303436 332323 * c(RPL32P3, H1FOO, COPG1, PLXND1, H1FX-AS1, IFT122, HMCES, RHO, SNORA7B, MBD4, H1FX, EFCAB12) 0.418042542426531 32 0.148551497397476 1.04837380388156 792 0.304068217504219 4 2 2 -6.85683866523242 LTS-025 chr3 129303437 129308280 4844 * PLXND1 0 1 NA 1.0433733195189 15 0.0860737225538998 3 3 0 -5.76857828207759 LTS-025 chr3 129308281 130190777 882497 * c(TMCC1-AS1, TMCC1, PLXND1, COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.335137455490242 19 0.209907247687113 1.05718675627047 492 0.431048715031549 3 2 1 -6.77165177809163 LTS-025 chr3 130190778 130195908 5131 * COL6A5 0 1 NA 1.32602035366118 9 3.05727366292257 4 4 0 -5.76441178301172 LTS-025 chr3 130195909 130678212 482304 * c(COL6A6, COL6A5, ATP2C1, PIK3R4) 0.134579788668001 9 0.233405227019448 1.09854886250377 465 0.459109038893805 3 3 0 -6.87196879270782 LTS-025 chr3 130678213 130718472 40260 * ATP2C1 0.436 1 NA 1.01342708616353 69 0.239095509849829 3 3 0 -5.76672326525229 LTS-025 chr3 130718473 132401600 1683128 * c(NPHP3-ACAD11, MIR5704, MRPL3, CPNE4, NUDT16, NUDT16P1, DNAJC13, NPHP3, ATP2C1, ASTE1, LOC339874, ACKR4, ACPP, SNORA58, NEK11, UBA5, ACAD11) 0.419806012521427 16 0.101015984708692 1.06011535979321 1262 0.266227228203871 4 2 2 -7.20091001802819 LTS-025 chr3 132401601 132413875 12275 * c(NPHP3-ACAD11, NPHP3) 0.488 1 NA 1.04058177621375 46 0.129073315495291 3 3 0 -5.76886668199283 LTS-025 chr3 132413876 133119280 705405 * c(NPHP3, NPHP3-AS1, TMEM108, BFSP2) 0.0245417341739089 9 0.123666666666667 1.20187041241338 254 0.682181229982619 4 4 0 -6.7341927083571 LTS-025 chr3 133119281 133307600 188320 * c(CDV3, BFSP2) 0.476 1 NA 1.0010582204737 95 0.275746387285099 3 3 0 -5.77006609361661 LTS-025 chr3 133307601 133380026 72426 * c(TOPBP1, CDV3) 0.475089929757445 9 0.0143362400153519 1.05471076293679 175 0.215185363252923 4 2 2 -14.229403989172 LTS-025 chr3 133380027 133475111 95085 * c(TOPBP1, TF) 0 1 NA 1.054365700852 39 0.239744924617586 3 3 0 -5.77719289395594 LTS-025 chr3 133475112 133673981 198870 * c(RAB6B, SRPRB, SLCO2A1, TF, C3orf36) 0.0410088714662254 11 0.148645092876837 1.12153190958725 375 0.526346400283035 4 4 0 -6.74164053595415 LTS-025 chr3 133673982 133698349 24368 * SLCO2A1 0.462 1 NA 1.09669563798924 13 0.226607590340659 4 4 0 -5.76844806429711 LTS-025 chr3 133698350 135721781 2023432 * c(MIR4788, EPHB1, ANAPC13, KY, AMOTL2, PPP2R3A, RYK, SLCO2A1, CEP63) 0.400952883229979 9 0.159153838924622 1.08270514522358 591 0.356697572812319 4 2 2 -6.91974595187731 LTS-025 chr3 135721782 135866229 144448 * PPP2R3A 0 1 NA 0.998797677890443 127 0.277393105777898 3 3 0 -5.76838991805892 LTS-025 chr3 135866230 137483916 1617687 * c(STAG1, NCK1, PCCB, IL20RB, MSL2, PPP2R3A, SLC35G2, SOX14) 0.271860983178468 9 0.225274153964551 1.04363633547704 647 0.323480233038011 3 2 1 -6.87046686349518 LTS-025 chr3 137483917 141161876 3677960 * c(PISRT1, DZIP1L, MRAS, ZBTB38, ARMC8, TRIM42, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, A4GNT, DBR1, CLDN18, PIK3CB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, ESYT3, SOX14, SPSB4, PXYLP1, COPB2) 0.198155769295949 65 0.179581815241367 1.55383266181421 2437 0.657171318342789 5 4 1 -6.74042650383629 LTS-025 chr3 141161877 141161880 4 * ZBTB38 NA 0 NA 0.444 1 NA NA NA NA NA LTS-025 chr3 141161881 143691892 2530012 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, C3orf58, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, PAQR9, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, TRPC1, CHST2, RNF7) 0.203110346027359 38 0.168147423970059 1.42595111551866 2280 0.401144239736629 5 4 1 -6.78296671204357 LTS-025 chr3 143691893 148459535 4767643 * c(AGTR1, C3orf58, PLSCR5, PLOD2, PLSCR1, PLSCR2, PLSCR4, ZIC1, ZIC4) 0.279108813936941 9 0.114280843150158 1.67248132010935 667 0.63663583732718 6 4 2 -6.88840385650541 LTS-025 chr3 148459536 148748380 288845 * c(CPA3, CPB1, AGTR1, GYG1, HLTF) 0.17019718616584 8 0.0367518221122631 1.24845861016182 250 0.439467029233289 6 5 1 -6.92916218367751 LTS-025 chr3 148748381 148757792 9412 * HLTF 0 1 NA 1.22668303834561 55 0.405310699294952 4 4 0 -5.76441187640036 LTS-025 chr3 148757793 152177192 3419400 * c(WWTR1-AS1, MIR548H2, MIR5186, HLTF-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, CP, AADACP1, WWTR1, SERP1, IGSF10, GPR171, AADACL2, ANKUB1, MBNL1-AS1, TM4SF1, MBNL1, COMMD2, SELENOT, PFN2, P2RY13, GPR87, SUCNR1, TMEM14EP, LOC646903, SIAH2, P2RY12, HLTF, TM4SF4, CLRN1, EIF2A, HPS3, TSC22D2, P2RY14) 0.115677838275832 39 0.0797817705004316 1.23371444016179 2533 0.362537853187572 4 4 0 -7.38196741611682 LTS-025 chr3 152177193 152552698 375506 * MBNL1 NA 0 NA 2.009 1 NA NA NA NA NA LTS-025 chr3 152552699 154007521 1454823 * c(ARHGEF26-AS1, C3orf79, DHX36, ARHGEF26, P2RY1, RAP2B) 0.152976083335405 10 0.17169226346383 1.63549728241845 439 0.425236068387633 6 5 1 -6.80802358320549 LTS-025 chr3 154007522 154018887 11366 * DHX36 0.37 1 NA 1.57953917138897 30 0.336927914456831 5 5 0 -5.76447174441112 LTS-025 chr3 154018888 160130110 6111223 * c(TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507537, SMC4, KCNAB1-AS2, KCNAB1-AS1, PQLC2L, DHX36, PLCH1, TIPARP, C3orf33, SCHIP1, LINC00880, GPR149, IL12A, LEKR1, C3orf80, MIR15B, MIR16-2, MLF1, MME, RSRC1, LXN, CCNL1, IFT80, PTX3, RARRES1, PA2G4P4, SHOX2, MFSD1, IQCJ, SSR3, LINC00886, KCNAB1, VEPH1, GFM1, GMPS, SLC33A1) 0.26410495413244 67 0.108999663898502 1.66743317421513 2727 0.49932631375432 5 4 1 -6.95333537883145 LTS-025 chr3 160130111 160148962 18852 * c(SMC4, IFT80) NA 0 NA 1.74769855066144 73 0.42171420942295 6 NA NA -5.76452645095266 LTS-025 chr3 160148963 160149476 514 * c(SMC4, IFT80) NA 0 NA 0.588 1 NA NA NA NA NA LTS-025 chr3 160149477 160152299 2823 * c(SMC4, IFT80) 0.063 1 NA 0.620380722902252 31 0.139282060844598 2 2 0 -5.76456227346329 LTS-025 chr3 160152300 160283369 131070 * c(SMC4, TRIM59, KPNA4, IFT80, SCARNA7) 0.0641233420617591 9 0.0462568313273234 0.612021399251123 320 0.181377219944977 2 2 0 -6.79803019433556 LTS-025 chr3 160283370 160394848 111479 * KPNA4 NA 0 NA 2.222 1 NA NA NA NA NA LTS-025 chr3 160394849 160560174 165326 * c(PPM1L, ARL14) 0 1 NA 1.61712172216283 57 0.757875090553981 5 5 0 -5.76494283127695 LTS-025 chr3 160560175 160787502 227328 * PPM1L 0.333 1 NA 1.85687611849335 43 0.951092603028161 6 6 0 -5.76445806803531 LTS-025 chr3 160787503 167035367 6247865 * c(LOC101243545, OTOL1, PPM1L, SPTSSB, SLITRK3, NMD3, BCHE, LINC01192, SI, ZBBX, B3GALNT1) 0.228872868541873 30 0.125707633799234 1.75630500967659 965 0.60482666501156 6 5 1 -6.82718354594895 LTS-025 chr3 167035368 172766729 5731362 * c(LOC100128164, PDCD10, WDR49, LRRC34, ECT2, RPL22L1, MECOM, TNIK, GHSR, GPR160, GOLIM4, LRRIQ4, SAMD7, TMEM212, CLDN11, SERPINI1, SERPINI2, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, LINC01330, FNDC3B, SKIL, SLC2A2, MIR551B, MIR569, TERC, SEC62, ZBBX, LRRC31, PHC3, SPATA16, ACTRT3, TNFSF10, EGFEM1P) 0.205446983892854 52 0.167009212090462 1.55698582117662 3201 0.535298793935003 5 4 1 -6.73931864538396 LTS-025 chr3 172766730 172766822 93 * SPATA16 0.296 1 NA 2.218 1 NA NA NA NA NA LTS-025 chr3 172766823 176737205 3970383 * c(MIR4789, NAALADL2-AS3, NLGN1, NAALADL2, SPATA16) 0.264112853266658 19 0.101049521760141 1.79326519305748 389 0.569222201845938 6 4 2 -6.95761795397076 LTS-025 chr3 176737206 184010280 7273075 * c(MIR1224, LINC00578, LINC00888, ABCC5, ABCC5-AS1, LINC01014, ALG3, KCNMB2, AP2M1, DNAJC19, TTC14, HTR3C, DVL3, HTR3D, MCF2L2, ATP11B, LAMP3, KCNMB3, HTR3E, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, ABCF3, PARL, MFN1, YEATS2, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, MAP6D1, FXR1, B3GNT5, ACTL6A, EIF2B5, USP13, KLHL6, VWA5B2, CAMK2N2, ECE2) 0.211369698918541 90 0.174746873827858 1.46435634675429 4836 0.498711414879303 5 4 1 -6.76682442218749 LTS-025 chr3 184010281 184016599 6319 * ECE2 0.322 1 NA 1.42466730029532 17 0.279088669232769 5 5 0 -5.76465662924807 LTS-025 chr3 184016600 184770380 753781 * c(CLCN2, FAM131A, EIF4G1, EPHB3, VPS8, POLR2H, PSMD2, MAGEF1, SNORD66, THPO, CHRD) 0.345384670435564 27 0.0851423811695742 1.49202189946134 1239 0.430727062688657 5 3 2 -6.7523303399565 LTS-025 chr3 184770381 184909744 139364 * c(EHHADH, VPS8, C3orf70, EHHADH-AS1) 0 1 NA 1.53480341606238 136 0.507746966428369 5 5 0 -5.76441365654445 LTS-025 chr3 184909745 185998582 1088838 * c(IGF2BP2, DGKG, EHHADH, LIPH, ETV5, NMRAL1P1, SENP2, TRA2B, IGF2BP2-AS1, TMEM41A, MAP3K13) 0.0612701237160048 25 0.138913018348413 1.4857766344592 1193 0.558420339862593 5 5 0 -6.77901816351087 LTS-025 chr3 185998583 186006618 8036 * DGKG 0.432 1 NA 1.62948438608254 11 0.269082684149484 5 5 0 -5.76467570734281 LTS-025 chr3 186006619 188607196 2600578 * c(LOC100131635, ADIPOQ-AS1, RPL39L, RTP1, CRYGS, DGKG, AHSG, EIF4A2, LOC253573, FETUB, HRG, LPP-AS2, RTP2, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, MASP1, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, ST6GAL1, SST, SNORA81, ADIPOQ) 0.283456260851228 57 0.154124998094384 1.45329569726848 1679 0.550869618997567 5 4 1 -6.85816680628705 LTS-025 chr3 188607197 189607152 999956 * c(MIR944, TPRG1-AS2, TPRG1, LPP, TP63) 0.242632892544981 8 0.161759963261265 1.61101201184592 264 0.407357742153936 5 4 1 -6.75850036045433 LTS-025 chr3 189607153 189612726 5574 * TP63 0 1 NA 1.76004479930181 23 0.849491442842393 6 6 0 -5.76441604900079 LTS-025 chr3 189612727 190577569 964843 * c(CLDN16, TMEM207, IL1RAP, P3H2, GMNC, TP63, CLDN1) 0.0886204183095251 16 0.172620006565481 1.59375580161197 601 0.685128784999942 5 5 0 -6.81948915501378 LTS-025 chr3 190577570 190936482 358913 * c(SNAR-I, OSTN, GMNC) 0.361 1 NA 1.42405217195285 23 0.592462807158063 5 5 0 -5.76755370421129 LTS-025 chr3 190936483 194115857 3179375 * c(DPPA2P3, LINC00887, OPA1-AS1, LRRC15, CPN2, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, GP5, HES1, OSTN, ATP13A5, OPA1, HRASLS, LOC647323, ATP13A4, MGC2889) 0.312237620464939 43 0.134633187729086 1.54530787205448 1287 0.725877935965529 5 3 2 -6.80817336646621 LTS-025 chr3 194115858 195346710 1230853 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.320702591318131 36 0.143065849529464 1.36782769525362 1009 0.420963003364146 5 3 2 -6.82982399924529 LTS-025 chr3 195346711 195452017 105307 * c(MUC20, MIR570, SDHAP2) 0.294143293049418 6 0.0695032373346738 0.754124756107686 78 0.424136967656284 3 2 1 -6.9071340604209 LTS-025 chr3 195452018 195452618 601 * MUC20 NA 0 NA 2.125 1 NA NA NA NA NA LTS-025 chr3 195452619 197362080 1909462 * c(MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, MUC20, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, CEP19) 0.286975840856437 69 0.144850343146412 1.38882272403057 2514 0.495395461327742 4 3 1 -6.81131044306535 LTS-025 chr3 197362081 197402283 40203 * c(MIR922, RUBCN) 0 1 NA 1.40308702650214 75 0.682607309321208 5 5 0 -5.76479684039643 LTS-025 chr3 197402284 197770513 368230 * c(RPL35A, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.0284917041170137 9 0.135333333333333 1.38802876757975 680 0.502920317657885 5 5 0 -6.74211596795585 LTS-025 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.257 1 NA 0.64356942616108 13 0.113130002368503 2 2 0 -5.76441871117402 LTS-025 chr4 60336 378661 318326 * c(ZNF595, ZNF718, ZNF876P, ZNF732, ZNF141) 0.156674973901289 10 0.108784649652421 0.503715758640344 231 0.214918340170961 1 1 0 -7.45027471279159 LTS-025 chr4 378662 420259 41598 * ABCA11P NA 0 NA 0.647 1 NA NA NA NA NA LTS-025 chr4 420260 3174924 2754665 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, FAM53A, DGKQ, ZNF721, FGFR3, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, NA NA NA NA NA NA NA NA NA LTS-025 CTBP1-AS2, TMEM129) 0.0550801368429866 139 0.0669583894678886 0.596972178313907 4834 0.28946328464641 2 2 0 -6.86119526697426 LTS-025 NA NA NA NA LTS-025 chr4 3174925 3517732 342808 * c(DOK7, HTT, HGFAC, MSANTD1, LRPAP1, RGS12) 0.0697145735075284 40 0.086827116023297 0.632766325046695 874 0.28555511722238 2 2 0 -6.76592923736639 LTS-025 chr4 3517733 3589560 71828 * c(LINC00955, LRPAP1) 0.405 1 NA 0.664083620406753 37 0.270226406575691 2 2 0 -5.7648190648891 LTS-025 chr4 3589561 3591714 2154 * LINC00955 0.440485083536594 18 0.0370895401282909 0.788410194038143 50 0.313558723465357 2 1 1 -8.4211874229951 LTS-025 chr4 3591715 4199266 607552 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0 1 NA 0.65326768489035 54 0.387609793286821 2 2 0 -5.76464805408427 LTS-025 chr4 4199267 25760680 21561414 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, NA NA NA NA NA NA NA NA NA LTS-025 NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.0816620869991594 240 0.0711110035484135 0.616135375302842 8799 0.252091994935262 2 2 0 -7.29805114736623 LTS-025 NA NA NA NA LTS-025 chr4 25760681 25766965 6285 * SEL1L3 NA 0 NA 0.514 1 NA NA NA NA NA LTS-025 chr4 25766966 40817497 15050532 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, SEL1L3, PDS5A, UBE2K, APBB2, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, FAM114A1) 0.0831789782985046 90 0.0771908711362072 0.575241795112247 4094 0.194290268739974 2 2 0 -9.06536715655095 LTS-025 chr4 40817498 41701761 884264 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1) 0.0354008453996984 8 0.0740944137088427 0.669412291534295 436 0.205083994888438 2 2 0 -6.7701424378223 LTS-025 chr4 41701762 49063872 7362111 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43, PHOX2B) 0.052794904631846 106 0.063291181650787 0.600272678804519 3845 0.251192292734497 2 2 0 -7.10168107151487 LTS-025 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.544396150140256 5 0.00817312669668103 2 NA NA -5.8262427770136 LTS-025 chr4 52709193 52744048 34856 * DCUN1D4 0 1 NA 0.629801684631346 37 0.157032752269344 2 2 0 -5.76501372529338 LTS-025 chr4 52744049 68906621 16162573 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, NA NA NA NA NA NA NA NA NA LTS-025 SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.0757185534945223 96 0.0645962765751125 0.602109189216472 4565 0.217628060686604 2 2 0 -7.72982007055254 LTS-025 NA NA NA NA LTS-025 chr4 68906622 68907460 839 * UBA6-AS1 NA 0 NA 0.207898142375382 40 0.192243508776413 1 NA NA -5.76820149284908 LTS-025 chr4 68907461 69363240 455780 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.0548 3 0.0860949088699984 0.605497801156252 393 0.205834186515191 2 2 0 -6.76313957378131 LTS-025 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.096488299333051 39 0.0714171565970689 0 NA NA -7.37662484457965 LTS-025 chr4 69434317 69512310 77994 * character(0) NA 0 NA 1.615 1 NA NA NA NA NA LTS-025 chr4 69512311 90165642 20653332 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, NA NA NA NA NA NA NA NA NA LTS-025 EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 G3BP2, HNRNPDL) 0.0734473946474427 290 0.0700040107429924 0.601504435211411 12803 0.244529315106661 2 2 0 -7.73385200936961 LTS-025 NA NA NA NA LTS-025 chr4 90165643 90165651 9 * GPRIN3 0.16 1 NA 0.818 1 NA NA NA NA NA LTS-025 chr4 90165652 90169925 4274 * GPRIN3 0.0793525958439356 21 0.043170095469632 0.848933860134786 113 2.73755571149632 15 14 1 -6.73529149788047 LTS-025 chr4 90169926 90171443 1518 * GPRIN3 NA 0 NA 0.596017494505422 31 0.164410167647279 2 NA NA -5.76463551793732 LTS-025 chr4 90171444 90647023 475580 * c(GPRIN3, SNCA) NA 0 NA 1.214 1 NA NA NA NA NA LTS-025 chr4 90647024 90647584 561 * SNCA 0 1 NA 1.564120060781 13 1.30291068627526 5 5 0 -5.7644102323425 LTS-025 chr4 90647585 98109018 7461434 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.0375852935788055 63 0.0369389693304663 1.15705396628541 1549 0.603271256312985 4 4 0 -6.82545987982471 LTS-025 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.963 1 NA NA NA NA NA LTS-025 chr4 98480011 144619314 46139304 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, MGAT4D, SPATA5, BBS12, FREM3, SGMS2, SYNPO2, EGF, EIF4E, ELF2, NA NA NA NA NA NA NA NA NA LTS-025 ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ZNF330, LINC01091, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, LINC01061, C4orf3, MAD2L1, MANBA, MGST2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, TET2, ARHGEF38, MCUB, BANK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, MAML3, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, TNRC18P1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UCP1, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 RAB33B, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, LAMTOR3, PDE5A, INPP4B, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.0398439529926679 307 0.0389774299015196 1.08264856787357 16680 0.436774978097295 4 4 0 -8.62215049506325 LTS-025 NA NA NA NA LTS-025 chr4 144619315 144620758 1444 * FREM3 0.107 1 NA 1.14267052506766 29 0.342661069242457 4 4 0 -5.76445507005639 LTS-025 chr4 144620759 146828267 2207509 * c(ANAPC10, ZNF827, FREM3, MMAA, GYPA, GYPB, GYPE, SMAD1, OTUD4, ABCE1, HHIP, HHIP-AS1, C4orf51) 0.117825981856945 24 0.124005931368192 1.08844365904142 1148 0.573486297369345 3 3 0 -7.07061549457502 LTS-025 chr4 146828268 183090557 36262290 * c(MIR1305, MIR3140, MIR4276, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, MIR4799, MIR3688-2, MAB21L2, ADAM29, LSM6, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, CTSO, ZNF827, SH3D19, FAM218A, C4orf45, DCLK2, TRIM60, RBM46, AGA, EDNRA, C4orf46, TIGD4, TMEM154, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, KIAA0922, TRIM2, ANP32C, FBXO8, GK3P, ARFIP1, GLRB, GPM6A, LINC01098, NA NA NA NA NA NA NA NA NA LTS-025 RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, HMGB2, HPGD, LOC340017, PRSS48, TRIM61, NR3C2, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, GATB, PLRG1, DKFZP434I0714, POU4F2, DCHS2, PPID, HPF1, MARCH1, NEIL3, FBXW7, TMEM144, TMA16, DDX60, TENM3, TMEM184C, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, RPS3A, MSMO1, SFRP2, MIR578, TDO2, TLL1, TLR2, LINC00290, FAM160A1, VEGFC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ARHGAP10, HAND2-AS1, MAP9, GLRA3, CEP44, TTC29, MND1, SLC10A7, TKTL2, CBR4, FHDC1, SAP30, SNORD73A, LOC90768, PRMT9, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L, LRBA) 0.0615906824703548 236 0.0671740589902539 0.632200892174641 10729 0.659585832829615 2 2 0 -6.77779948222861 LTS-025 NA NA NA NA LTS-025 chr4 183090558 183245043 154486 * TENM3 NA 0 NA 0.91 1 NA NA NA NA NA LTS-025 chr4 183245044 184614909 1369866 * c(CLDN24, WWC2-AS2, DCTD, RWDD4, ING2, LOC389247, FAM92A1P2, CLDN22, CDKN2AIP, TENM3, TRAPPC11, WWC2) 0.0555595558003386 27 0.0530043539575905 0.770449345983029 954 0.353971683509849 2 2 0 -6.9345444693463 LTS-025 chr4 184614910 184615065 156 * TRAPPC11 NA 0 NA 0.573 1 NA NA NA NA NA LTS-025 chr4 184615066 186506780 1891715 * c(MIR3945, LINC01093, ENPP6, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, IRF2, HELT, C4orf47, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.0719982064123215 50 0.0474800108316271 0.688352122881573 1501 0.279085472271887 2 2 0 -6.91829575985161 LTS-025 chr4 186506781 189064952 2558172 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, MTNR1A, FLJ38576, TLR3, SORBS2) 0.0410092102759183 27 0.0495593689843914 0.778378127027754 1186 0.308668098241394 2 2 0 -7.25827330092649 LTS-025 chr4 189064953 189660529 595577 * c(TRIML1, LINC01060) NA 0 NA 0.74590783755609 24 0.228112573117951 2 NA NA -5.90074965950141 LTS-025 chr4 189660530 189660562 33 * character(0) 0.342 1 NA 1.912 1 NA NA NA NA NA LTS-025 chr4 189660563 189662252 1690 * character(0) 0.413 1 NA 1.65537867272518 48 0.500232785793044 5 5 0 -5.76443536009526 LTS-025 chr4 189662253 189662278 26 * character(0) NA 0 NA 0.952 1 NA NA NA NA NA LTS-025 chr4 189662279 190945944 1283666 * FRG1 0.277912251304064 9 0.161278485855988 0.753429028558214 102 0.461232609213594 3 2 1 -6.96935798258452 LTS-025 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.812364362169608 21 0.311548054842572 3 NA NA -5.76917382580883 LTS-025 chr5 140347 151738 11392 * PLEKHG4B 0 1 NA 1.11338563575819 31 0.643750749869069 4 4 0 -5.76458860050662 LTS-025 chr5 151739 733907 582169 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.036978390239383 64 0.0435419884927728 1.05415313758586 1082 0.664623936096918 3 3 0 -6.74390235841128 LTS-025 chr5 733908 733927 20 * character(0) NA 0 NA 0.926 1 NA NA NA NA NA LTS-025 chr5 733928 747628 13701 * character(0) 0 1 NA 1.02415101211108 12 1.13732136126421 3 3 0 -5.76445554072958 LTS-025 chr5 747629 756165 8537 * character(0) NA 0 NA 0.386903797760671 27 0.381458327790148 1 NA NA -5.76471494309804 LTS-025 chr5 756166 766786 10621 * character(0) NA 0 NA 1.47 1 NA NA NA NA NA LTS-025 chr5 766787 796041 29255 * ZDHHC11 0.333 1 NA 1.15122273921931 13 0.590952924499371 4 4 0 -5.76466069726569 LTS-025 chr5 796042 840506 44465 * ZDHHC11 0.377273344610728 9 0.0760328876210814 1.21916734930557 81 0.715413384772127 4 2 2 -6.74117053346905 LTS-025 chr5 840507 843815 3309 * ZDHHC11 0.052 1 NA 1.24870925474894 13 0.604309576378336 4 4 0 -5.76441075436094 LTS-025 chr5 843816 41941840 41098025 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506548, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAB2, NA NA NA NA NA NA NA NA NA LTS-025 DAP, UGT3A2, ADAMTS16, DNAH5, RANBP3L, CCT5, PDZD2, FBXL7, ICE1, TTC33, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, FBXO4, GDNF, LINC01019, C5orf51, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, PLCXD3, SLC6A18, IL7R, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, OXCT1, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 NSUN2, WDR70, BRIX1, C5orf22, PRKAA1, ANKH, PRLR, PRDM9, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, C6, LOC729506, LSP1P3, C7, C9, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, CARD6, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 NUP155) 0.0342124875225498 287 0.0365548403553168 1.07470663444896 14230 0.475023247887316 3 3 0 -8.22070551094521 LTS-025 NA NA NA NA LTS-025 chr5 41941841 42424651 482811 * GHR NA 0 NA 0.451 1 NA NA NA NA NA LTS-025 chr5 42424652 43297144 872493 * c(CCDC152, LOC100132356, LOC100506639, LOC153684, NIM1K, GHR, HMGCS1, ANXA2R, SELENOP, LOC648987, ZNF131) 0.0378099353147915 8 0.0382473154987006 0.563726622183049 484 0.204544536072974 2 2 0 -7.01830358290028 LTS-025 chr5 43297145 43381580 84436 * c(HMGCS1, CCL28) 0.122 1 NA 0.658040956063985 59 0.230692463808374 2 2 0 -5.76469118018409 LTS-025 chr5 43381581 45695920 2314340 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, HCN1, C5orf34, CCL28, TMEM267) 0.0692715599076743 16 0.0710581921151015 0.584190566173613 630 0.194758472515056 2 2 0 -7.13578109924651 LTS-025 chr5 45695921 45696278 358 * HCN1 NA 0 NA 0.40127365919993 7 0.118808970320306 1 NA NA -5.7646647210544 LTS-025 chr5 49692017 49692467 451 * EMB 0.121 1 NA 0.694926733610842 11 0.543470397286985 2 2 0 -5.76441483702943 LTS-025 chr5 49692468 53816812 4124345 * c(FST, SNX18, EMB, LOC257396, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, ARL15, LOC642366, MIR581, PARP8, HSPB3) 0.108652181289982 32 0.0594414780646993 0.57534948638424 1272 0.211353038956071 2 2 0 -7.9488100085018 LTS-025 chr5 53816813 53838974 22162 * SNX18 NA 0 NA 1.061 1 NA NA NA NA NA LTS-025 chr5 53838975 53842427 3453 * SNX18 0.035 1 NA 0.941217046217459 60 0.146662011032939 3 3 0 -5.76441013532345 LTS-025 chr5 53842428 54153687 311260 * character(0) NA 0 NA 0.608 1 NA NA NA NA NA LTS-025 chr5 54153688 68849714 14696027 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, PLK2, ESM1, ADAMTS6, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, PIK3R1, DHX29, DDX4, NA NA NA NA NA NA NA NA NA LTS-025 SGTB, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, NDUFAF2, MRPS36) 0.0893506532924173 169 0.0599666603389908 0.58061257411373 6985 0.212511708998117 2 2 0 -8.67884481877851 LTS-025 NA NA NA NA LTS-025 chr5 68849715 68849813 99 * OCLN NA 0 NA 0.72 1 NA NA NA NA NA LTS-025 chr5 68849814 69373289 523476 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.847072087337957 47 0.301698676798339 3 NA NA -5.80243245437483 LTS-025 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.092 1 NA NA NA NA NA LTS-025 chr5 69717474 70308346 590873 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.32770737624396 50 0.218289424987159 1 NA NA -5.80379209177265 LTS-025 chr5 70308347 70388996 80650 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.208874109104099 39 0.164126831243837 1 NA NA -6.22006083101623 LTS-025 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.455 1 NA NA NA NA NA LTS-025 chr5 70751404 93855402 23103999 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, NA NA NA NA NA NA NA NA NA LTS-025 SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.0808144759118316 204 0.0662026202024151 0.601659589963772 10235 0.235773818571701 2 2 0 -7.94743790935576 LTS-025 NA NA NA NA LTS-025 chr5 93855403 96367879 2512477 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.084791801738185 62 0.0567626265198692 0.567092844308521 2214 0.211370120184313 2 2 0 -7.48749401152133 LTS-025 chr5 96367880 96371142 3263 * character(0) 0 6 0 0.855609227981349 72 0.268493163841715 0 0 0 -Inf LTS-025 chr5 96371143 115628890 19257748 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, RGMB, APC, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, ST8SIA4, REEP5, NA NA NA NA NA NA NA NA NA LTS-025 CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.0716055976186308 106 0.0693570919190022 0.60248289394733 5728 0.205844722622207 2 2 0 -7.9245500817733 LTS-025 NA NA NA NA LTS-025 chr5 115628891 121799898 6171008 * c(LOC100505841, ZNF474, MGC32805, SRFBP1, DMXL1, TNFAIP8, DTWD2, HSD17B4, FAM170A, LOX, PRR16, COMMD10, SEMA6A, LINC00992, FTMT, SNCAIP) 0.0321504014109298 14 0.0363060858277489 1.08700653788631 1363 0.410366584148744 4 4 0 -7.08103026242923 LTS-025 chr5 121799899 122012186 212288 * MGC32805 NA 0 NA 0.69 1 NA NA NA NA NA LTS-025 chr5 122012187 129522346 7510160 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, CSNK1G3, CEP120, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, TEX43, LMNB1, C5orf63, ALDH7A1, ISOC1, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6) 0.0704981578481845 64 0.0636228657608178 0.624196131199374 2806 0.263731605603745 2 2 0 -6.87750105914946 LTS-025 chr5 130494663 134572390 4077728 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, C5orf66-AS2, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, NA NA NA NA NA NA NA NA NA LTS-025 LYRM7, CDKN2AIPNL, FNIP1, DDX46) 0.0680671321152274 111 0.0682093299667479 0.567842774302926 4641 0.223366145067288 2 2 0 -7.51034695140849 LTS-025 NA NA NA NA LTS-025 chr5 134572391 134782576 210186 * c(C5orf66, DCANP1, C5orf66-AS2, H2AFY) 0.113547770872942 14 0.0407590750361462 0.615652239736838 230 0.230585475384152 1 1 0 -7.62439442079867 LTS-025 chr5 134782577 134784391 1815 * DCANP1 0 1 NA 0.606869818009136 39 0.59337086645301 2 2 0 -5.76442270561042 LTS-025 chr5 134784392 137087498 2303107 * c(VTRNA2-1, MIR874, HNRNPA0, SLC25A48, FBXL21, KLHL3, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, SMAD5-AS1) 0.0505073292019078 32 0.051793236185009 0.63771947967803 955 0.663185762272648 2 2 0 -6.73380405258327 LTS-025 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.482 1 NA NA NA NA NA LTS-025 chr5 137087505 139948723 2861219 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, TMEM173, PROB1, ANKHD1-EIF4EBP3, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, ANKHD1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.0466605327844781 35 0.0566456181043174 0.578227563656211 3599 0.201464753853411 2 2 0 -7.22424761680367 LTS-025 chr5 139948724 140011316 62593 * CD14 NA 0 NA 0.805 1 NA NA NA NA NA LTS-025 chr5 140011317 140553564 542248 * c(ZMAT2, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, NDUFA2, PCDHB17P, WDR55, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, CD14, PCDHA9) 0.00833585953011662 20 0.0245569156300859 1.04692227797384 1696 0.446442271445465 4 4 0 -7.13987468368004 LTS-025 chr5 140553565 140559914 6350 * c(PCDHB8, PCDHB7) 0.0391437182715924 3 0.0347706773014274 0.387893104978809 67 0.41825168305148 3 3 0 -6.75678144973429 LTS-025 chr5 140559915 140559920 6 * PCDHB8 NA 0 NA 1.52 1 NA NA NA NA NA LTS-025 chr5 140559921 140595017 35097 * c(PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16) 0.0404155037008548 5 0.0351397211144312 1.06807995341266 286 0.720371987674209 3 3 0 -6.74554255043958 LTS-025 chr5 140595018 140595991 974 * PCDHB13 NA 0 NA 0.124 1 NA NA NA NA NA LTS-025 chr5 140595992 140604317 8326 * c(PCDHB14, PCDHB13) NA 0 NA 0.122527276118937 47 0.0402964155984531 0 NA NA -7.11357895703985 LTS-025 chr5 140604318 140605334 1017 * PCDHB14 NA 0 NA 0.886 1 NA NA NA NA NA LTS-025 chr5 140605335 153767743 13162409 * c(GNPDA1, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, FAM114A2, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, SLC36A1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, PCDHGA12, CCDC69, IL17B, GLRA1, GM2A, RELL2, SLC36A3, GPX3, GRIA1, NA NA NA NA NA NA NA NA NA LTS-025 NR3C1, ANXA6, NDST1, HTR4, ARSI, IRGM, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, NMUR2, KCTD16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.0400256024540284 274 0.0366877232562374 1.05081760775137 11442 0.401115655924264 3 3 0 -7.286275020231 LTS-025 NA NA NA NA LTS-025 chr5 153767744 153768231 488 * GALNT10 0.08 1 NA 0.9093076422898 9 0.468913401149698 3 3 0 -5.76441170784505 LTS-025 chr5 153768232 154065496 297265 * c(MIR3141, SAP30L-AS1, GALNT10, SAP30L, HAND1) 0.124264766091617 9 0.185331984407561 1.02354174723127 226 0.432740879250202 3 3 0 -6.87439452100902 LTS-025 chr5 154065497 154166024 100528 * LARP1 0 1 NA 1.00984240722507 31 0.423824390495043 3 3 0 -5.76607668537013 LTS-025 chr5 154166025 154267631 101607 * c(FAXDC2, LARP1, GEMIN5, CNOT8) 0.0060599076495939 4 0.037 1.06545317727755 351 0.314647705731376 5 5 0 -6.94185987999063 LTS-025 chr5 154267632 154267676 45 * GEMIN5 NA 0 NA 0.977 1 NA NA NA NA NA LTS-025 chr5 154267677 160113310 5845634 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, GEMIN5, HAVCR1, CYFIP2, LOC285626, LOC285627, KIF4B, MRPL22, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.0394800467177013 100 0.0417786809487588 1.00174831680196 3214 0.418762913621333 3 3 0 -6.81546693212517 LTS-025 chr5 160113311 160719144 605834 * c(ATP10B, GABRB2, LOC285629) 0 1 NA 1.39832966345111 95 0.574949285070549 5 5 0 -5.77327012669061 LTS-025 chr5 160719145 175386614 14667470 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NUDCD2, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HMMR, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, SLIT3, BNIP1, NA NA NA NA NA NA NA NA NA LTS-025 SNORA74B, STK10, MIR585, PANK3, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, CCNG1, BOD1, UBTD2, SFXN1) 0.0274661140695515 120 0.0438077158316495 1.0491667992141 5290 0.463264674991221 3 3 0 -7.20184257478228 LTS-025 NA NA NA NA LTS-025 chr5 175386615 175386654 40 * THOC3 NA 0 NA 1.095 1 NA NA NA NA NA LTS-025 chr5 175386655 175387291 637 * THOC3 NA 0 NA 0.268465237062442 38 0.217340829742401 1 NA NA -5.76500947778539 LTS-025 chr5 175387292 175387371 80 * THOC3 NA 0 NA 0.475 1 NA NA NA NA NA LTS-025 chr5 175387372 175392141 4770 * THOC3 NA 0 NA 0.648575739005739 38 0.546593613424206 2 NA NA -5.76441020418474 LTS-025 chr5 175392142 175392149 8 * THOC3 NA 0 NA 1.709 1 NA NA NA NA NA LTS-025 chr5 175392150 177059703 1667554 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, THOC3, UNC5A, PDLIM7) 0.0280065100573872 83 0.0410527888483887 1.02495366936254 3228 0.47664776220699 3 3 0 -6.7846754654321 LTS-025 chr5 177059704 177075746 16043 * LOC202181 NA 0 NA 0.715 1 NA NA NA NA NA LTS-025 chr5 177075747 177210783 135037 * c(LOC202181, FAM153A) 0.146 1 NA 0.632504336348037 48 0.327164607510961 2 2 0 -5.76478982555009 LTS-025 chr5 177210784 177210830 47 * character(0) NA 0 NA 1.393 1 NA NA NA NA NA LTS-025 chr5 177210831 179305571 2094741 * c(MIR1229, MGAT4B, ZNF354B, TBC1D9B, N4BP3, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, C5orf45, NHP2, PROP1, CLK4, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, ADAMTS2, MAML1) 0.0476434721747397 78 0.0459348541143958 1.02476654515762 2644 0.460435891253392 3 3 0 -6.81753948293653 LTS-025 chr5 179305572 179306075 504 * TBC1D9B NA 0 NA 0.668 1 NA NA NA NA NA LTS-025 chr5 179306076 179662080 356005 * c(TBC1D9B, RASGEF1C, MIR340, RNF130, MAPK9) 0.0349295398544122 6 0.0581644221152415 0.614855910656759 274 0.239291144476384 2 2 0 -6.78109958733758 LTS-025 chr5 179662081 179662722 642 * MAPK9 0.081 1 NA 0.486312209235483 15 0.150891004496939 2 2 0 -5.7657841266455 LTS-025 chr5 179662723 180374817 712095 * c(HEIH, OR2Y1, FLT4, MGAT1, MAPK9, CNOT6, ZFP62, LINC00847, BTNL8, SCGB3A1, GFPT2) 0.0922228156554567 29 0.0651066953039318 0.591533065673336 808 0.288992331176567 2 2 0 -7.01910748461473 LTS-025 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 0.843 1 NA NA NA NA NA LTS-025 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) NA 0 NA 0.908786062226263 62 0.279315860299613 3 NA NA -5.76492300991246 LTS-025 chr5 180429800 180661377 231578 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.0601098110091682 4 0.0795005241072871 0.581757056887765 362 0.197972264298886 2 2 0 -6.7828740312563 LTS-025 chr5 180661378 180688111 26734 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 0.590273334256518 161 0.132977118822882 2 NA NA -5.7719946023949 LTS-025 chr6 203389 203722 334 * character(0) 0.125 1 NA 1.09285685233993 7 0.896407778169012 4 4 0 -5.76441387427113 LTS-025 chr6 203723 367484 163762 * DUSP22 0.246332087294589 6 0.127758235220539 0.852490666016152 110 0.409102304947382 4 3 1 -6.82426642291675 LTS-025 chr6 367485 391716 24232 * character(0) NA 0 NA 1.76 1 NA NA NA NA NA LTS-025 chr6 391717 1624844 1233128 * c(HUS1B, FOXF2, FOXC1, GMDS, LINC01622, IRF4, EXOC2, FOXQ1) 0.112772318148641 12 0.0832475315859366 1.11939313029621 543 0.449439325521287 3 3 0 -7.31855382781665 LTS-025 chr6 1624845 1726652 101808 * GMDS NA 0 NA 1.563 1 NA NA NA NA NA LTS-025 chr6 1726653 1726661 9 * GMDS 0 1 NA 4.526 1 NA NA NA NA NA LTS-025 chr6 1726662 2623423 896762 * c(GMDS-AS1, LINC01600, GMDS) 0.326 1 NA 1.44227325928932 69 0.514474418738417 5 5 0 -5.77145094900904 LTS-025 chr6 2623424 3244391 620968 * c(LOC100507194, MIR4645, LINC01600, SERPINB1, SERPINB9P1, MYLK4, TUBB2B, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, WRNIP1, BPHL, TUBB2A, RIPK1) 0.305956548315256 20 0.124958266717543 1.33838192953459 696 0.396655733936077 4 3 1 -6.8149622742609 LTS-025 chr6 3244392 3255251 10860 * character(0) NA 0 NA 1.928 1 NA NA NA NA NA LTS-025 chr6 3255252 3272676 17425 * c(PSMG4, SLC22A23) 0.307352456207287 39 0.0692112883072537 1.73635158262608 219 0.798617071182102 10 7 3 -6.7436459126076 LTS-025 chr6 3272677 3751937 479261 * c(PXDC1, SLC22A23) 0.290977030069127 11 0.104666483304221 1.48308428507582 213 0.546369214690603 4 3 1 -6.80452484714065 LTS-025 chr6 3751938 4079739 327802 * c(PXDC1, FAM217A, FAM50B, C6orf201, PRPF4B) 0 1 NA 1.42219722402221 263 0.384566198691584 5 5 0 -5.77147024598665 LTS-025 chr6 4079740 7269037 3189298 * c(MIR3691, ECI2, FARS2, RPP40, F13A1, FAM217A, LY86-AS1, C6orf201, NRN1, LYRM4, RREB1, PPP1R3G, CDYL, LY86) 0.172107232927752 10 0.161557316970376 1.47281273111398 855 0.474710868534545 5 4 1 -6.78988125721598 LTS-025 chr6 7269038 7269423 386 * character(0) 0.302 1 NA 1.52175648338775 9 0.226308417872601 5 5 0 -5.76441025858112 LTS-025 chr6 7269424 7988189 718766 * c(BLOC1S5-TXNDC5, SNRNP48, DSP, PIP5K1P1, CAGE1, BMP6, SSR1, TXNDC5, RIOK1) 0.31164404876175 45 0.11846165470887 1.45238835183915 989 0.435982887189301 5 3 2 -6.83773392195288 LTS-025 chr6 7988190 8014786 26597 * c(BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, PIP5K1P1, BLOC1S5) 0 1 NA 1.4558805167745 19 0.275734818364456 5 5 0 -5.7649242856034 LTS-025 chr6 8014787 11010937 2996151 * c(SCARNA27, TFAP2A-AS1, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, SYCP2L, LINC00518, GCNT2, C6orf52, MAK, SLC35B3, TMEM14C, ELOVL2, PAK1IP1, BLOC1S5, TFAP2A, HULC, TMEM14B, GCM2, EEF1E1) 0.0914014291193265 23 0.150089340982895 1.50137004670126 1215 0.529533339708971 5 5 0 -6.85589523657561 LTS-025 chr6 11010938 11103232 92295 * c(ELOVL2-AS1, SMIM13, ERVFRD-1, ELOVL2) 0.293 1 NA 1.23544799506072 23 0.338121607330667 4 4 0 -5.76441013465236 LTS-025 chr6 11103233 13978431 2875199 * c(TMEM170B, LOC100130357, RANBP9, EDN1, RNF182, PHACTR1, SMIM13, SIRT5, HIVEP1, ERVFRD-1, NEDD9, TBC1D7, NOL7, GFOD1, MCUR1, ADTRP) 0.23122753286077 39 0.154936637608457 1.42464312189056 1659 0.611230900106383 5 4 1 -6.76186686655787 LTS-025 chr6 13978432 13979526 1095 * RNF182 0.371 1 NA 1.44769248901596 23 0.226936314654775 5 5 0 -5.76444888101592 LTS-025 chr6 13979527 16306401 2326875 * c(MIR4639, RNF182, GMPR, MYLIP, JARID2, ATXN1, DTNBP1, CD83) 0.309286575729988 17 0.14433121630472 1.46566237095011 658 0.408181706073073 5 3 2 -6.82169696032553 LTS-025 chr6 16306402 16306492 91 * ATXN1 NA 0 NA 0.405 1 NA NA NA NA NA LTS-025 chr6 16306493 25923918 9617426 * c(SLC17A4, SLC17A2, CAP2, SCGN, SLC17A3, NRSN1, MBOAT1, HDGFL1, E2F3, HIST1H2AA, KDM1B, RBM24, RNF144B, HIST1H2BA, GPLD1, ID4, KAAG1, NHLRC1, HIST1H2APS1, STMND1, CASC15, GMNN, FAM8A1, DCDC2, TDP2, CDKAL1, CARMIL1, ACOT13, PRL, MRS2, ATXN1, KIF13A, SLC17A1, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319, NUP153) 0.36441324314123 91 0.197246877407807 1.02902401056581 3734 0.426456417634319 3 2 1 -6.9938655637069 LTS-025 chr6 25923919 25967068 43150 * c(SLC17A2, TRIM38) 0.477 1 NA 1.08461371783049 21 0.133824743245642 4 4 0 -5.78881964457867 LTS-025 chr6 25967069 26240752 273684 * c(TRIM38, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4B, HIST1H4E) 0.46361132509729 40 0.031182660780205 0.947367445038148 552 0.312083755747622 4 2 2 -10.0061958687251 LTS-025 chr6 26240753 26374549 133797 * c(BTN3A2, HIST1H2BH, HIST1H2BI, HIST1H3G, HIST1H4F, HIST1H4H, HIST1H4G, HIST1H3F) 0.434 1 NA 1.0298391225072 113 0.190207418887243 3 3 0 -5.78235653973136 LTS-025 chr6 26374550 26598188 223639 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HCG11, BTN2A3P, BTN1A1) 0.392896868527116 16 0.125842494147777 1.02014561671666 558 0.349893025374899 4 2 2 -6.79557288100227 LTS-025 chr6 26598189 26636919 38731 * c(ABT1, ZNF322) 0 1 NA 1.05755645519259 53 1.13317066442658 3 3 0 -5.76465627427655 LTS-025 chr6 26636920 28473389 1836470 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-025 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.110587143233211 21 0.199868683080143 1.0364893767971 1605 0.441522022043498 3 3 0 -6.86879040335594 LTS-025 NA NA NA NA LTS-025 chr6 28473390 28474218 829 * GPX6 0.429 1 NA 0.899902608582324 11 0.378261766025016 3 3 0 -5.76441710450505 LTS-025 chr6 28474219 29142020 667802 * GPX6 0.444403227997399 16 0.121062518284287 1.08151747482494 474 0.338861199149324 4 2 2 -7.02172020433452 LTS-025 chr6 29142021 29230482 88462 * character(0) 0 1 NA 1.2060335234608 9 1.15937914419745 4 4 0 -5.7644330601417 LTS-025 chr6 29230483 29643698 413216 * character(0) 0.295159855779013 29 0.219181740726686 1.06055577852646 652 0.663844766769626 3 2 1 -6.75630549454654 LTS-025 chr6 29643699 29644970 1272 * character(0) 0.455 1 NA 0.999740592690504 13 0.316012008859774 3 3 0 -5.76443799856662 LTS-025 chr6 29644971 29910396 265426 * character(0) 0.433482769948996 39 0.0871391305337358 0.997442183266827 207 1.4292438262004 4 2 2 -7.05376284513636 LTS-025 chr6 29910397 29910429 33 * character(0) 0.477 1 NA 0.217 1 NA NA NA NA NA LTS-025 chr6 29910430 29910508 79 * character(0) 0.468858508444317 6 0.021844907873461 0.430118126181886 8 0.649238675020872 0 0 0 -11.6762131998692 LTS-025 chr6 29910509 29910693 185 * character(0) 0.073 1 NA 0.890448357657058 3 0.550451632752597 3 3 0 -5.76441125152286 LTS-025 chr6 29910694 29911115 422 * character(0) 0.269792061120962 12 0.148614281095238 0.651409654005545 18 0.414883761971606 4 3 1 -6.73453340109359 LTS-025 chr6 29911116 29911119 4 * character(0) 0.352 1 NA 1.05290823396224 2 0.71064231509248 3 3 0 -5.76441017953837 LTS-025 chr6 29911120 29911241 122 * character(0) 0.440726134399053 6 0.137706087979677 0.689796124603462 9 0.31506062026925 2 1 1 -6.89407359373368 LTS-025 chr6 29911242 30692768 781527 * character(0) 0.403550841581035 51 0.140497929647714 1.02826813201791 1915 0.329978692641871 4 2 2 -6.91201772540343 LTS-025 chr6 30692769 30867427 174659 * character(0) 0 1 NA 1.00673428888527 237 0.281951124744376 3 3 0 -5.77038846039955 LTS-025 chr6 30867428 30956572 89145 * character(0) 0.0615899781809249 9 0.163333333333333 1.04360676127633 397 0.480715893971947 3 3 0 -6.75080660189467 LTS-025 chr6 30956573 30993499 36927 * character(0) 0.469 1 NA 1.00841361163565 33 0.242197378342041 3 3 0 -5.76621008072694 LTS-025 chr6 30993500 31238974 245475 * character(0) 0.420342560949289 89 0.103067878057287 1.13676518220247 628 9.74143872654857 4 2 2 -6.88159589317544 LTS-025 chr6 31238975 31239016 42 * character(0) NA 0 NA 0.729 1 NA NA NA NA NA LTS-025 chr6 31239017 31322404 83388 * character(0) 0.43104046470398 17 0.0652981285201597 0.534057859918492 42 0.443455536675471 2 1 1 -7.24894182034109 LTS-025 chr6 31322405 31322830 426 * character(0) NA 0 NA 1.075 1 NA NA NA NA NA LTS-025 chr6 31322831 31657413 334583 * character(0) 0.416390348336483 75 0.131059641192663 0.99688429009362 1261 0.326799277842591 4 2 2 -6.89767152220539 LTS-025 chr6 31657414 31659515 2102 * character(0) 0 1 NA 1.13662646807421 17 0.148315492427857 4 4 0 -5.76480839824932 LTS-025 chr6 31659516 31732607 73092 * character(0) 0.170611274943886 11 0.242539631250797 1.04106193776181 501 0.369051210452056 5 4 1 -6.80160834858891 LTS-025 chr6 31732608 31737818 5211 * character(0) 0.425 1 NA 1.06812982039745 53 0.176777294643023 3 3 0 -5.76601231484016 LTS-025 chr6 31737819 31843924 106106 * character(0) 0.467681116708647 11 0.0247356937532495 1.02328979934833 475 0.217998605879082 4 2 2 -11.1003499276832 LTS-025 chr6 31843925 31848774 4850 * character(0) 0 1 NA 1.11631405978848 31 0.439574107175257 4 4 0 -5.76456494656488 LTS-025 chr6 31848775 31946614 97840 * character(0) 0.358587226794019 16 0.212864550046894 1.05579523394737 643 0.296737305031343 4 2 2 -6.75072559471093 LTS-025 chr6 31946615 31962237 15623 * character(0) 0 1 NA 1.22501619078069 27 0.645855705705688 4 4 0 -5.76441174985501 LTS-025 chr6 31962238 32036849 74612 * character(0) 0.200976439890174 16 0.200481711551619 1.0877273728603 362 0.400849998188899 5 4 1 -6.7687806714519 LTS-025 chr6 32036850 32083175 46326 * character(0) 0.452 1 NA 1.07212056853551 157 0.209200779228291 3 3 0 -5.77517412744493 LTS-025 chr6 32083176 32427789 344614 * character(0) 0.436334780296739 54 0.0919566406498664 1.07045493225081 1136 0.301921303133733 4 2 2 -7.08994208450221 LTS-025 chr6 32427790 32427927 138 * character(0) NA 0 NA 0.944930097902577 5 0.441730460801607 3 NA NA -5.76441014146176 LTS-025 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 2.903 1 NA NA NA NA NA LTS-025 chr6 32485401 32485467 67 * HLA-DRB5 0.234 1 NA 3.29242482511957 7 0.282717594244218 11 11 0 -5.76441013511225 LTS-025 chr6 32485468 32489928 4461 * HLA-DRB5 0.272112094215539 14 0.108991001745733 3.31650403511012 48 3.64196993343035 15 11 4 -6.73308919224319 LTS-025 chr6 32489929 32552160 62232 * HLA-DRB5 0.285690990293292 37 0.119163160661586 1.44262123885109 100 1.90582049402732 7 5 2 -6.73547398468848 LTS-025 chr6 32552161 32557404 5244 * HLA-DRB5 NA 0 NA 0.944 1 NA NA NA NA NA LTS-025 chr6 32557405 32610689 53285 * c(HLA-DQA1, HLA-DRB5) 0.345515474092283 26 0.0701005980441954 0.932110415052947 65 0.312134850511516 3 2 1 -6.76172372649822 LTS-025 chr6 32610690 32610695 6 * HLA-DQA1 0.302 1 NA 1.574 1 NA NA NA NA NA LTS-025 chr6 32610696 32610769 74 * HLA-DQA1 0.275715700733646 7 0.0103555828053323 1.52137710890825 9 0.49266040816954 11 8 3 -6.75055961128744 LTS-025 chr6 32610770 32610819 50 * HLA-DQA1 0.249 1 NA 1.763 1 NA NA NA NA NA LTS-025 chr6 32610820 32628022 17203 * HLA-DQA1 0.212610152489089 37 0.0918262411217979 1.45546151121111 64 0.455498009062521 5 4 1 -6.73414672929367 LTS-025 chr6 32628023 32628030 8 * character(0) 0.312 1 NA 1.593 1 NA NA NA NA NA LTS-025 chr6 32628031 32634485 6455 * character(0) 0.355939446976193 39 0.0708855780972846 1.63590929520884 85 1.63221951464182 13 8 5 -6.73477995815805 LTS-025 chr6 32634486 32712991 78506 * character(0) 0.026 1 NA 1.34611768874675 11 0.602611377860784 4 4 0 -5.7653646923042 LTS-025 chr6 32712992 32724587 11596 * character(0) 0.162928718777484 8 0.121612675561155 1.32384531518751 36 0.614410525987669 7 6 1 -6.73798353079403 LTS-025 chr6 32724588 32732677 8090 * character(0) 0.0254633539139975 3 0.021733231083604 1.0818484921569 41 0.850814573103257 5 5 0 -6.73910836660475 LTS-025 chr6 32732678 32782112 49435 * character(0) 0.482 1 NA 0.943247782709726 25 0.280582441836026 3 3 0 -5.7644120229829 LTS-025 chr6 32782113 32977457 195345 * character(0) 0.421460137127405 34 0.126188118206393 0.963922110535204 672 0.396688852819583 4 2 2 -6.88274774246426 LTS-025 chr6 32977458 33035459 58002 * character(0) NA 0 NA 1.275 1 NA NA NA NA NA LTS-025 chr6 33035460 33054760 19301 * character(0) 0.396749698842791 5 0.218853147110111 2.29960327094513 129 23.8529193015205 15 8 7 -6.74279514704874 LTS-025 chr6 33054761 33101346 46586 * character(0) 0.444571315766184 4 0.0564940999869308 1.01324382301384 32 0.244700324870923 4 2 2 -7.68134469403445 LTS-025 chr6 33101347 33132181 30835 * character(0) 0 1 NA 1.02672187109117 30 0.41714468533801 3 3 0 -5.76521541761857 LTS-025 chr6 33132182 33156802 24621 * character(0) 0.202454027261689 21 0.230015630938835 1.06773919917126 296 0.647239743989956 5 4 1 -6.73977341540353 LTS-025 chr6 33156803 33162082 5280 * character(0) 0.483 1 NA 0.954003786326637 37 0.236365580590084 3 3 0 -5.76442058588635 LTS-025 chr6 33162083 33283766 121684 * character(0) 0.409522595608315 29 0.132209501234778 0.993876466773445 787 0.305827262381681 4 2 2 -6.82720614655808 LTS-025 chr6 33283767 33290791 7025 * character(0) NA 0 NA 1.03585641587798 91 0.17987467554133 3 NA NA -5.76560766952615 LTS-025 chr6 33290792 33332790 41999 * character(0) NA 0 NA 1.937 1 NA NA NA NA NA LTS-025 chr6 33332791 33333446 656 * character(0) 0.292 1 NA 1.98808223569087 7 0.383333623188296 7 7 0 -5.76442091078939 LTS-025 chr6 33333447 34008562 675116 * c(MIR1275, LINC01016, IP6K3, LEMD2, GRM4, ITPR3, LINC00336, MLN, GGNBP1, BAK1, UQCC2) 0.183390304465255 34 0.120879637694978 1.92770430983059 1107 1.16096040730757 6 5 1 -6.73396136493178 LTS-025 chr6 34008563 34024312 15750 * GRM4 NA 0 NA 1.059 1 NA NA NA NA NA LTS-025 chr6 34024313 34078463 54151 * GRM4 0.481633522893713 2 0.0106066017177982 1.17018174726353 36 0.224598497146875 4 2 2 -16.2424664483609 LTS-025 chr6 34078464 34123118 44655 * GRM4 NA 0 NA 1.06425730646871 28 0.18910752169574 3 NA NA -5.77571272258255 LTS-025 chr6 34123119 34208386 85268 * c(GRM4, HMGA1) NA 0 NA 3.303 1 NA NA NA NA NA LTS-025 chr6 34208387 34557536 349150 * c(RPS10-NUDT3, NUDT3, C6orf1, SPDEF, PACSIN1, HMGA1, RPS10, C6orf106) 0 1 NA 2.05077691095891 314 0.522011775038193 7 7 0 -5.76521846535309 LTS-025 chr6 34557537 35765083 1207547 * c(MIR5690, CLPS, FANCE, ARMC12, SCUBE3, FKBP5, ANKS1A, LOC285847, CLPSL1, CLPSL2, RPL10A, DEF6, PPARD, UHRF1BP1, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76) 0.107694377032082 24 0.133356440479608 1.85205516531054 1608 0.765260326491091 7 6 1 -6.84033004273713 LTS-025 chr6 35765084 35801484 36401 * c(CLPS, LHFPL5, SRPK1) 0.276 1 NA 1.90209079376846 43 0.453101125712369 6 6 0 -5.76459678259128 LTS-025 chr6 35801485 35996074 194590 * c(SLC26A8, MAPK14, SRPK1) 0.198482303536456 5 0.123954830482721 1.7762713187479 260 0.687130808946956 6 5 1 -6.7427826640142 LTS-025 chr6 35996075 36020429 24355 * MAPK14 NA 0 NA 1.312 1 NA NA NA NA NA LTS-025 chr6 36020430 38141879 2121450 * c(MIR3925, MIR4462, CDKN1A, STK38, BTBD9, MAPK14, CCDC167, TMEM217, FGD2, PI16, C6orf89, KCTD20, PXT1, CMTR1, MTCH1, MDGA1, BRPF3, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, PIM1, TBC1D22B, MAPK13, CPNE5, ZFAND3, SRSF3, RNF8) 0.229947297870598 85 0.162727132365328 1.46147188202009 2635 0.583114015217471 5 4 1 -6.74501307603134 LTS-025 chr6 38141880 38142316 437 * BTBD9 0.36 1 NA 1.28484282930449 11 0.555372176603631 4 4 0 -5.76441143821602 LTS-025 chr6 38142317 38851669 709353 * c(BTBD9, DNAH8, GLO1) 0.351277310824072 18 0.0955751936804672 1.40235425188692 422 0.366754868261824 5 3 2 -6.76192566255599 LTS-025 chr6 38851670 38958005 106336 * c(LOC100131047, DNAH8) 0 1 NA 1.52632704008677 159 0.47103722712925 5 5 0 -5.76441158114779 LTS-025 chr6 38958006 39300215 342210 * c(DNAH8, GLP1R, SAYSD1, KCNK16, KCNK5, KCNK17) 0.0263932274923155 11 0.103719902534751 1.51654350847675 401 0.934261989533601 5 5 0 -6.73353881531911 LTS-025 chr6 39300216 39300475 260 * character(0) 0.438 1 NA 1.67598753321245 5 0.47556440152728 6 6 0 -5.76441505984269 LTS-025 chr6 39300476 39303870 3395 * KIF6 0.332523105405513 9 0.142772059980625 1.44476766700861 81 0.550685161894584 6 4 2 -6.73435838630526 LTS-025 chr6 39303871 39551111 247241 * KIF6 NA 0 NA 1.46164526749391 87 0.342886917001571 5 NA NA -5.76702619813155 LTS-025 chr6 39551112 39551182 71 * KIF6 NA 0 NA 1.914 1 NA NA NA NA NA LTS-025 chr6 39551183 39688435 137253 * KIF6 0 1 NA 1.5728817041379 43 0.290729098368006 5 5 0 -5.76516314560722 LTS-025 chr6 39688436 40359631 671196 * c(KIF6, DAAM2, LINC00951, MOCS1, LRFN2, TDRG1) 0.184485306579322 6 0.177019490452323 1.64997697864742 295 0.485496340316051 6 5 1 -6.7502242840373 LTS-025 chr6 40359632 40359710 79 * LRFN2 NA 0 NA 2.386 1 NA NA NA NA NA LTS-025 chr6 40359711 40400893 41183 * LRFN2 0.28705224119976 2 0.350724963468528 2.29292683805969 52 0.669578078751459 7 5 2 -6.7334291420466 LTS-025 chr6 40400894 41651690 1250797 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, TSPO2, UNC5CL, TREML4, TREML1, TREML3P, MDFI, NFYA, TREM2, TREM1, LRFN2, TREML2, NCR2) 0.081612398350674 16 0.170942436705069 1.54270784179684 803 0.788464832531282 5 5 0 -6.80184257851075 LTS-025 chr6 41651691 41738158 86468 * c(FRS3, PGC, TFEB) 0.35 1 NA 1.44338679177159 149 0.419766592417214 5 5 0 -5.76540436528773 LTS-025 chr6 41738159 41774783 36625 * c(TOMM6, FRS3, USP49, PRICKLE4) 0.25126518498783 9 0.165753665955772 1.42958996014739 228 0.573116496034528 4 3 1 -6.73800955196647 LTS-025 chr6 41774784 41873058 98275 * USP49 NA 0 NA 0.678 1 NA NA NA NA NA LTS-025 chr6 41873059 42155611 282553 * c(TAF8, GUCA1A, GUCA1B, C6orf132, BYSL, CCND3, MED20) 0.250121482902432 20 0.225838991319037 1.02229551315874 598 0.388119585584949 4 3 1 -6.77539869209022 LTS-025 chr6 42155612 42155930 319 * GUCA1B 0.417 1 NA 0.612639006004998 2 0.316076731190387 2 2 0 -5.76441576749833 LTS-025 chr6 42155931 42660655 504725 * c(UBR2, GUCA1B, MRPS10, TRERF1) 0.429681177843358 21 0.114636942437543 0.977565223048015 530 0.260843875437282 4 2 2 -7.13423618348078 LTS-025 chr6 42660656 42664463 3808 * c(UBR2, PRPH2) 0 1 NA 0.894213136703596 19 0.138257556924689 3 3 0 -5.76472271261889 LTS-025 chr6 42664464 43267407 602944 * c(DNPH1, CNPY3, SLC22A7, KLHDC3, PTCRA, CUL9, GLTSCR1L, GNMT, RPL7L1, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, PPP2R5D, PTK7, PRPH2, SRF, TBCC, TTBK1, RRP36, KLC4, CUL7) 0.1137346920103 23 0.210199895450571 1.04690675597398 1840 0.40792051578329 3 3 0 -6.83963879429161 LTS-025 chr6 43267408 43269029 1622 * SLC22A7 0.491 1 NA 1.05529024326138 13 0.114292135808604 3 3 0 -5.76538579115871 LTS-025 chr6 43269030 44227751 958722 * c(LINC01512, MIR4647, SLC22A7, CAPN11, SLC29A1, C6orf223, RSPH9, LRRC73, ZNF318, YIPF3, HSP90AB1, SLC35B2, CRIP3, NFKBIE, POLH, GTPBP2, MRPS18A, TMEM63B, XPO5, MRPL14, DLK2, VEGFA, ABCC10, TJAP1, POLR1C, MAD2L1BP) 0.37124410496001 63 0.182430366742156 1.03049283374077 1939 0.32107076174917 3 2 1 -6.80887024652569 LTS-025 chr6 44227752 44227814 63 * NFKBIE NA 0 NA 1.262 1 NA NA NA NA NA LTS-025 chr6 44227815 46659671 2431857 * c(MIR4642, RCAN2, TCTE1, TDRD6, SPATS1, ENPP4, TMEM151B, NFKBIE, CYP39A1, CLIC5, AARS2, ENPP5, MIR586, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.340944063696385 23 0.208465274688587 1.10599997947171 1341 0.310577306959341 4 2 2 -6.92324664942289 LTS-025 chr6 46659672 46665836 6165 * TDRD6 0 1 NA 1.16774676721237 53 0.362365536845295 4 4 0 -5.76449958821577 LTS-025 chr6 46665837 50011366 3345530 * c(ANKRD66, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, PGK2, CENPQ, RHAG, CRISP2, PLA2G7) 0.175858453328285 38 0.218948521785451 1.1316802968506 1625 0.557319731839397 4 3 1 -6.87811312592764 LTS-025 chr6 50011367 50683009 671643 * c(DEFB112, TFAP2D) 0.457 1 NA 1.26619175510208 23 0.265626472560438 4 4 0 -5.76785929162453 LTS-025 chr6 50683010 51613507 930498 * c(PKHD1, TFAP2B, TFAP2D) 0.35533151092076 9 0.211163706898489 1.11923590994472 327 0.456327599484261 4 2 2 -6.76138306479434 LTS-025 chr6 51613508 51618170 4663 * PKHD1 0.47 1 NA 0.985861041624082 7 0.667541616323514 3 3 0 -5.76442366388247 LTS-025 chr6 51618171 51695647 77477 * PKHD1 0.463 1 NA 0.941185261320297 23 0.255856038140522 3 3 0 -5.7644101364103 LTS-025 chr6 51695648 51944717 249070 * PKHD1 0.101111227671833 9 0.199092943119539 1.05710952740567 269 0.616380076437849 3 3 0 -6.80286037337394 LTS-025 chr6 51944718 51947237 2520 * PKHD1 0.496 1 NA 1.0604895712779 9 0.499976277215007 3 3 0 -5.76449632364962 LTS-025 chr6 51947238 52878637 931400 * c(IL17F, EFHC1, GSTA5, ICK, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, MIR206, MCM3, MIR133B, PKHD1, LOC730101, GSTA7P, PAQR8, TRAM2) 0.421588840488317 38 0.142956142743927 0.991945609228489 860 0.285990472796968 3 2 1 -6.98777239678265 LTS-025 chr6 52878638 52964809 86172 * c(ICK, FBXO9) 0 1 NA 1.00132980956303 153 0.251079272508886 3 3 0 -5.76756050481716 LTS-025 chr6 52964810 53409942 445133 * c(MIR5685, FBXO9, GCLC, ELOVL5, RPS16P5, GCM1) 0.274400437363477 10 0.246872999288658 1.00251642912888 335 0.444741012401081 3 2 1 -6.76886471551185 LTS-025 chr6 53409943 53516308 106366 * KLHL31 NA 0 NA 1.056 1 NA NA NA NA NA LTS-025 chr6 53516309 54185335 669027 * c(MLIP-IT1, TINAG, KLHL31, LRRC1, MLIP) 0.256047959252639 7 0.22880153595888 1.11709905847929 377 0.297417295805274 4 3 1 -6.77942471836222 LTS-025 chr6 54185336 54191686 6351 * TINAG 0.473 1 NA 1.24518325484797 9 0.131843657412862 4 4 0 -5.76442364265858 LTS-025 chr6 54191687 57512529 3320843 * c(BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.363152814445851 73 0.143466415068697 1.09390339665773 2172 0.330944757949012 4 2 2 -6.99177897964426 LTS-025 chr6 57512530 58445634 933105 * c(GUSBP4, PRIM2) NA 0 NA 1.02505727423599 21 0.174803209080274 3 NA NA -5.89518837490231 LTS-025 chr6 62390154 63990732 1600579 * c(KHDRBS2, LGSN) 0 1 NA 1.1175595245877 135 0.47321729675726 4 4 0 -5.80723296321892 LTS-025 chr6 63990733 70411412 6420680 * c(PHF3, EYS, LOC441155, SLC25A51P1, LGSN, LMBRD1, ADGRB3, PTP4A1) 0.290832424076728 26 0.220507139252992 1.07655833008706 1021 0.393484521173016 3 2 1 -7.17105324376594 LTS-025 chr6 70411413 70500463 89051 * LMBRD1 0.474 1 NA 1.02595667828977 43 0.282706657621581 3 3 0 -5.76938383634939 LTS-025 chr6 70500464 72922550 2422087 * c(COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, LMBRD1, FAM135A, SMAP1, OGFRL1, LINC00472) 0.422056336262275 37 0.116731539235342 1.056597163219 1095 0.323183527158472 4 2 2 -7.17942250944779 LTS-025 chr6 72922551 72943459 20909 * RIMS1 0 1 NA 1.24548603352214 23 0.425395742279359 4 4 0 -5.76441467569083 LTS-025 chr6 72943460 73906438 962979 * c(MIR4282, KCNQ5-AS1, RIMS1, KCNQ5) 0.121302810967813 13 0.232789962555662 1.14593787787017 369 0.641089539549697 4 4 0 -6.83581536072229 LTS-025 chr6 73906439 73906746 308 * KCNQ5 0.495 1 NA 0.921163287225411 7 0.174147447105415 3 3 0 -5.76441292994772 LTS-025 chr6 73906747 76731960 2825214 * c(KHDC1L, LOC100506804, MB21D1, COL12A1, COX7A2, CD109, KHDC3L, EEF1A1, MTO1, SENP6, SLC17A5, FILIP1, DPPA5, IMPG1, NA, OOEP, MYO6, DDX43, TMEM30A, KCNQ5, KHDC1) 0.288200676535093 45 0.213710993841891 1.06242564502662 2045 0.353707655362769 3 2 1 -6.9488333658309 LTS-025 chr6 76731961 78172260 1440300 * c(HTR1B, IMPG1) 0.496 1 NA 1.11675162184935 43 0.46765127896264 4 4 0 -5.80445719432822 LTS-025 chr6 78172261 80228673 2056413 * c(HMGN3-AS1, IRAK1BP1, LCA5, HTR1B, PHIP, HMGN3) 0.455976753264239 18 0.042113020978644 1.05114399257514 412 0.256009563907639 4 2 2 -9.05719420076231 LTS-025 chr6 80228674 80341263 112590 * c(LCA5, SH3BGRL2) NA 0 NA 1.57131546542184 9 0.366841397760819 5 NA NA -5.7647708219189 LTS-025 chr6 80341264 80382681 41418 * SH3BGRL2 NA 0 NA 0.685 1 NA NA NA NA NA LTS-025 chr6 80382682 80410452 27771 * SH3BGRL2 0 1 NA 0.707610549941911 43 0.42301712931553 2 2 0 -5.76516106877276 LTS-025 chr6 80410453 86200816 5790364 * c(MRAP2, RWDD2A, RIPPLY2, PRSS35, CEP162, DOPEY1, IBTK, ME1, NT5E, CYB5R4, PGM3, FAM46A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, SNAP91) 0.0714835630523311 30 0.071127859617685 0.622408612454614 2213 0.200239068364627 2 2 0 -6.91441476338987 LTS-025 chr6 86200817 91296539 5095723 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.0669479254391413 73 0.0684470153602035 0.574315677503806 3572 0.326126023627954 2 2 0 -7.15200338943455 LTS-025 chr6 91296540 105177061 13880522 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.0745692220152905 55 0.0653587715885865 0.624414685990562 2435 0.229997091986182 2 2 0 -7.00831453189622 LTS-025 chr6 105177062 121613428 16436367 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-025 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.0825983032218571 176 0.0642902708702602 0.581974026538218 8938 0.193390898908732 2 2 0 -8.93723292563015 LTS-025 NA NA NA NA LTS-025 chr6 121613429 121615696 2268 * TBC1D32 NA 0 NA 0.678 1 NA NA NA NA NA LTS-025 chr6 121615697 129786425 8170729 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, C6orf58, CENPW, SOGA3, THEMIS, LAMA2, HDDC2, PKIB, ECHDC1, SERINC1, PTPRK, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.0802088083041693 63 0.0633861692454506 0.625964509802042 2906 0.2373603469947 2 2 0 -6.96094823542114 LTS-025 chr6 129786426 129794380 7955 * LAMA2 NA 0 NA 0.982 1 NA NA NA NA NA LTS-025 chr6 129794381 129837811 43431 * LAMA2 NA 0 NA 0.986889211896579 79 0.256342017859131 3 NA NA -5.76530350300978 LTS-025 chr6 129837812 129897282 59471 * character(0) NA 0 NA 0.45 1 NA NA NA NA NA LTS-025 chr6 129897283 135522755 5625473 * c(MIR3662, SMLR1, LINC01013, HBS1L, TMEM200A, SLC18B1, TAAR1, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, EPB41L2, EYA4, TMEM244, MOXD1, LINC00326, TAAR6, ARG1, HMGA1P7, MYB, ENPP1, ENPP3, VNN3, SNORA33, RPS12, CTAGE9, SGK1, ALDH8A1, TCF21, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1) 0.0922742834940351 64 0.0583170640577649 0.585447516238764 3033 0.202466844285689 2 2 0 -7.76055049966409 LTS-025 chr6 135522756 135748309 225554 * c(MYB, AHI1) 0 1 NA 0.573593477774614 121 0.989890254859935 2 2 0 -5.76640367920294 LTS-025 chr6 135748310 136664139 915830 * c(LINC00271, MTFR2, PDE7B, AHI1, MAP7, BCLAF1) 0.36356768324718 9 0.163824686106148 0.603031887674015 532 0.272349931852602 2 1 1 -6.7697545132143 LTS-025 chr6 136664140 136664370 231 * MAP7 0 1 NA 0.705430071962942 7 0.432790117394432 2 2 0 -5.76441567574903 LTS-025 chr6 136664371 139695144 3030774 * c(LOC100130476, NHEG1, MIR3145, GVQW2, CITED2, IL22RA2, OLIG3, TXLNB, HEBP2, CCDC28A, SLC35D3, IFNGR1, ECT2L, MAP3K5, FLJ46906, HECA, PEX7, IL20RA, ARFGEF3, NHSL1, ABRACL, PBOV1, PERP, TNFAIP3, REPS1, MAP7) 0.0594599636021181 41 0.0597907020261553 0.583511166274006 2128 0.209500330698701 2 2 0 -7.15928230661732 LTS-025 chr6 140526405 143093627 2567223 * c(MIR3668, MIR4465, LOC153910, HIVEP2, NMBR, VTA1, ADGRG6) 0 6 0 0.641004754997803 520 0.286721285510329 0 0 0 -Inf LTS-025 chr6 143093628 143096268 2641 * HIVEP2 NA 0 NA 0.157708555464323 51 0.0305103004143281 1 NA NA -6.70223318530575 LTS-025 chr6 143096269 143381637 285369 * c(LINC01277, HIVEP2, AIG1) NA 0 NA 0.709 1 NA NA NA NA NA LTS-025 chr6 143381638 153078366 9696729 * c(UST-AS1, LOC100507557, RAET1E-AS1, UST, RAB32, KATNA1, GINM1, ADAT2, STXBP5, RAET1E, ZC2HC1B, RAET1L, ESR1, TAB2, SASH1, SYNE1, FUCA2, SHPRH, MTHFD1L, PHACTR2-AS1, GRM1, ZC3H12D, NUP43, RAET1G, SUMO4, SAMD5, IYD, PCMT1, AIG1, PLAGL1, RMND1, HYMAI, PLEKHG1, ZBTB2, RPS18P9, RAET1K, KATNBL1P6, STXBP5-AS1, UTRN, VIP, ULBP3, EPM2A, ARMT1, ADGB, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, SF3B5, FBXO30, NA NA NA NA NA NA NA NA NA LTS-025 LRP11, LTV1, PEX3, PPIL4, STX11, LATS1, AKAP12, PHACTR2) 0.0803260776763117 124 0.0602022396951004 0.604120477582167 6029 0.325728181504569 2 2 0 -7.12987860978186 LTS-025 NA NA NA NA LTS-025 chr6 153078367 153291707 213341 * c(FBXO5, VIP) NA 0 NA 1.451 1 NA NA NA NA NA LTS-025 chr6 153291708 153309782 18075 * c(FBXO5, MTRF1L) 0.0509580150678665 5 0.0135830777072061 1.51732416028601 80 0.535589899408214 2 2 0 -6.76544615954602 LTS-025 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.407 1 NA NA NA NA NA LTS-025 chr6 153309882 153311026 1145 * MTRF1L NA 0 NA 0.487688120028888 39 0.439306738232423 2 NA NA -5.76469378002123 LTS-025 chr6 153311027 153311125 99 * MTRF1L NA 0 NA 1.255 1 NA NA NA NA NA LTS-025 chr6 153311126 153344531 33406 * c(RGS17, MTRF1L) 0.0647796421384075 3 0.0367740850781271 1.33962034879034 55 0.437048030706902 2 2 0 -6.88724006860465 LTS-025 chr6 153344532 153345647 1116 * RGS17 0.055 1 NA 1.63016964423599 11 0.42161997106399 5 5 0 -5.76442534653248 LTS-025 chr6 153345648 154533916 1188269 * c(IPCEF1, RGS17, OPRM1) 0.0345540288509844 18 0.021293467653388 1.54698314903329 296 0.933844486248169 4 4 0 -6.8301856448553 LTS-025 chr6 154533917 158403127 3869211 * c(MIR3692, MIR4466, CNKSR3, SCAF8, IPCEF1, TIAM2, CLDN20, OPRM1, NOX3, TFB1M, SNX9, ARID1B, TMEM242, ZDHHC14, SYNJ2) 0.0455961398489569 16 0.116489699115415 1.01138113941621 1250 0.32757136015958 3 3 0 -6.84761762292613 LTS-025 chr6 158403128 158403139 12 * SYNJ2 NA 0 NA 1.224 1 NA NA NA NA NA LTS-025 chr6 158403140 165108663 6705524 * c(LOC100129518, C6orf99, AIRN, MIR3918, CAHM, SYNJ2-IT1, EZR-AS1, TAGAP, PACRG, PNLDC1, OSTCP1, PACRG-AS1, MRPL18, IGF2R, ACAT2, DKFZp451B082, LPA, GTF2H5, MAS1, MAP3K4, PARK2, PLG, AGPAT4, TULP4, TMEM181, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, LOC729603, EZR, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, QKI, WTAP) 0.0316711687401191 114 0.0255886891470661 1.44992948585431 3787 0.616058908264632 5 5 0 -6.82499735629021 LTS-025 chr6 165693170 165749544 56375 * c(PDE10A, C6orf118) 0.0119324024411536 5 0.053218417864495 0.633474697232897 197 0.25972558094194 3 3 0 -6.92572319562598 LTS-025 chr6 165749545 165808630 59086 * PDE10A 0.184 1 NA 0.658584356963042 29 0.136237820895537 2 2 0 -5.76502948042843 LTS-025 chr6 165808631 167590541 1781911 * c(LOC100289495, MIR1913, MIR3939, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, GPR31, PRR18, TCP10L2, LINC00602, MPC1, RPS6KA2, T, RNASET2, LINC00473) 0.0956738270773479 41 0.0897729385049018 0.608030971241506 925 0.322939248358477 2 2 0 -6.92530451085979 LTS-025 chr6 167590542 167592656 2115 * TCP10L2 0.467 1 NA 0.458750408498096 25 0.145217939663115 1 1 0 -5.76857995329007 LTS-025 chr6 167592657 167787957 195301 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.115379483974403 8 0.101150171244824 0.621403544254073 303 0.303530127793521 2 2 0 -6.97787517981418 LTS-025 chr6 167787958 167787960 3 * TCP10 NA 0 NA 0.523 1 NA NA NA NA NA LTS-025 chr6 167787961 167791549 3589 * TCP10 0.412529019857267 4 0.0814964211893177 0.473450282702378 64 0.341024561778343 2 1 1 -6.9056700291134 LTS-025 chr6 167791550 167794761 3212 * TCP10 NA 0 NA 0.312319333589121 15 0.136730426474174 1 NA NA -5.7659207675045 LTS-025 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.091 1 NA NA NA NA NA LTS-025 chr6 167796265 168226523 430259 * c(LINC01558, AFDN-AS1, TCP10) 0.124 1 NA 0.667720367981586 71 0.14304306593566 2 2 0 -5.77712975097076 LTS-025 chr6 168226524 168711170 484647 * c(HGC6.3, DACT2, KIF25, AFDN, AFDN-AS1, FRMD1) 0.0930793768880434 14 0.0456670343024158 0.670332056507192 581 0.223839924762365 2 2 0 -7.23792046903856 LTS-025 chr6 168711171 168711852 682 * DACT2 NA 0 NA 0.508 1 NA NA NA NA NA LTS-025 chr6 168711853 170890594 2178742 * c(MIR4644, LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, TBP, TCTE3, THBS2, LINC00574, FAM120B) 0.113655381687602 42 0.0539050440560121 0.56445437419485 1111 0.368085776425623 2 2 0 -7.65089389196694 LTS-025 chr6 170890595 170893599 3005 * PDCD2 NA 0 NA 0.537167914190651 41 0.181675689341092 2 NA NA -5.76629417037121 LTS-025 chr7 193047 208819 15773 * FAM20C 0 1 NA 0.502066655053251 23 0.259951097559771 2 2 0 -5.77338548972357 LTS-025 chr7 208820 917639 708820 * c(WI2-2373I1.2, SUN1, HRAT92, LOC442497, PDGFA, GET4, DNAAF5, PRKAR1B, FAM20C) 0.105047084314708 30 0.0509227496977688 0.582301539104297 596 0.228764422207587 2 2 0 -7.45754118264391 LTS-025 chr7 917640 925517 7878 * GET4 0 1 NA 0.684640167965428 55 0.385845001241645 2 2 0 -5.76451258519592 LTS-025 chr7 925518 2119660 1194143 * c(MIR4655, ADAP1, PSMG3-AS1, GPR146, TMEM184A, TFAMP1, INTS1, GPER1, UNCX, ELFN1, MIR339, GET4, CYP2W1, MAFK, MICALL2, MAD1L1, PSMG3, C7orf50, ZFAND2A, COX19) 0.0844196910330853 55 0.0646800569287765 0.638922219381907 1328 0.282247233791283 2 2 0 -6.9023832946918 LTS-025 chr7 2119661 2188783 69123 * MAD1L1 NA 0 NA 0.893 1 NA NA NA NA NA LTS-025 chr7 2188784 2945846 757063 * c(MIR4648, AMZ1, BRAT1, IQCE, GNA12, SNX8, MRM2, LFNG, NUDT1, CHST12, TTYH3, MAD1L1, CARD11, EIF3B) 0.0536092883768993 42 0.0310311091143832 1.06135646955657 1206 0.484331149056961 3 3 0 -6.95921243946263 LTS-025 chr7 2945847 2945868 22 * CARD11 NA 0 NA 0.485 1 NA NA NA NA NA LTS-025 chr7 2945869 5172205 2226337 * c(RBAK-RBAKDN, MIR4656, SDK1, FOXK1, MMD2, RBAKDN, RNF216P1, RADIL, PAPOLB, RBAK, ZNF890P, CARD11, AP5Z1) 0.0225872107591357 33 0.0578856304459165 0.624482162065217 1277 0.323679033308645 2 2 0 -6.8776715964363 LTS-025 chr7 5172206 5262385 90180 * c(WIPI2, ZNF890P) 0.116 1 NA 0.569042420914499 59 0.187558569071802 2 2 0 -5.78955554299931 LTS-025 chr7 5262386 5938049 675664 * c(RNF216-IT1, SLC29A4, WIPI2, ZNF815P, RNF216, ACTB, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.0845805791684433 34 0.0536705554331154 0.578069742149477 864 0.251897512656405 2 2 0 -7.05581578695924 LTS-025 chr7 5938050 6018360 80311 * c(RSPH10B, CCZ1, PMS2) 0.105774174366514 3 0.0124899959967968 0.38984822376195 130 0.591112089981151 11 10 1 -7.32475507424952 LTS-025 chr7 6018361 6022539 4179 * PMS2 NA 0 NA 0.615 1 NA NA NA NA NA LTS-025 chr7 6022540 6836393 813854 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.0653972585623385 41 0.0528535828446113 0.572992844573519 1337 0.227720443283698 2 2 0 -6.92067882925049 LTS-025 chr7 6836394 6837984 1591 * RSPH10B2 NA 0 NA 1.253 1 NA NA NA NA NA LTS-025 chr7 6837985 6863802 25818 * c(CCZ1B, RSPH10B2) 0.4 1 NA 0.978843204531658 58 0.422747340946187 3 3 0 -5.76454387300908 LTS-025 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.492 1 NA NA NA NA NA LTS-025 chr7 6864270 15601752 8737483 * c(LOC100131257, ARL4A, GLCCI1, DGKB, PER4, ETV1, VWDE, CCZ1B, THSD7A, NXPH1, ICA1, COL28A1, AGMO, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, SCIN, PHF14) 0.0889084699606392 62 0.0663450848237832 0.609259475766445 2153 0.20348388027966 2 2 0 -7.35770904313786 LTS-025 chr7 15601753 15650821 49069 * character(0) NA 0 NA 0.908 1 NA NA NA NA NA LTS-025 chr7 15650822 15725522 74701 * MEOX2 0.067 1 NA 1.13529128027608 39 0.326818458770695 4 4 0 -5.76740789842083 LTS-025 chr7 15725523 15725621 99 * MEOX2 NA 0 NA 0.625 1 NA NA NA NA NA LTS-025 chr7 15725622 30880542 15154921 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DFNA5, AHR, EVX1, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, NA NA NA NA NA NA NA NA NA LTS-025 STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ABCB5, FAM221A, MACC1, IL6, ITGB8, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, TOMM7, FKBP14, CDCA7L, KLHL7, STK31, ANKMY2, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, ISPD, GGCT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 FAM188B, FAM126A, PLEKHA8, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.0968782302438621 175 0.0696576182243054 0.599132015233725 7695 0.236685171506211 2 2 0 -7.8234274262493 LTS-025 NA NA NA NA LTS-025 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 0.734 1 NA NA NA NA NA LTS-025 chr7 30882039 30963822 81784 * c(INMT-FAM188B, AQP1, FAM188B) 0.134 1 NA 0.698387630919006 131 0.206715684650878 2 2 0 -5.77115628649097 LTS-025 chr7 30963823 30964343 521 * AQP1 0 1 NA 0.819783783081234 11 0.331644415273073 3 3 0 -5.76446419460015 LTS-025 chr7 30964344 31151099 186756 * c(ADCYAP1R1, GHRHR, AQP1) 0.0130107365966689 8 0.0360624458405139 0.6803658649796 285 0.392916565950545 3 3 0 -7.03260608908785 LTS-025 chr7 31151100 31377018 225919 * character(0) NA 0 NA 1.08 1 NA NA NA NA NA LTS-025 chr7 31377019 31378078 1060 * NEUROD6 0 2 0 1.5825621415717 23 1.65895451743232 0 0 0 -Inf LTS-025 chr7 31378079 31378933 855 * NEUROD6 0.481 1 NA 1.18055557846401 19 0.443726754600777 4 4 0 -5.76441550980065 LTS-025 chr7 31378934 32249094 870161 * c(PPP1R17, CCDC129, PDE1C, NEUROD6) 0.256856546727211 8 0.238344251331676 1.16983480739658 500 0.483121627142924 4 3 1 -6.74022646195946 LTS-025 chr7 32249095 35734529 3485435 * c(DPY19L1P1, LOC100130673, MIR550B2, FKBP9, BMPER, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, DPY19L2P1, TBX20, RP9, HERPUD2, MIR550A2) 0.324467921903083 36 0.210180109837797 1.05725010879563 1328 0.66574125707799 3 2 1 -6.7966589648204 LTS-025 chr7 35734530 35841886 107357 * c(HERPUD2, SEPT7) 0.453 1 NA 1.01884578114805 15 0.23957700819808 3 3 0 -5.77146536326627 LTS-025 chr7 35841887 36894905 1053019 * c(AOAH-IT1, KIAA0895, AOAH, ANLN, EEPD1, ELMO1, SEPT7) 0.118118538986135 9 0.212249721894858 0.993335000008273 665 0.427877885932897 3 3 0 -6.83269278785666 LTS-025 chr7 36894906 37250727 355822 * c(MIR1200, ELMO1) 0.482 1 NA 1.06061398033011 73 0.329675470585289 3 3 0 -5.79233666725779 LTS-025 chr7 37250728 38299826 1049099 * c(GPR141, TARP, NME8, EPDR1, SFRP4, STARD3NL, ELMO1) 0.374817189980508 17 0.150059351003293 1.01764540554897 390 0.447640192139712 3 2 1 -6.80483738030301 LTS-025 chr7 38299827 38301699 1873 * TARP NA 0 NA 1.22 1 NA NA NA NA NA LTS-025 chr7 38301700 38402560 100861 * c(TRG-AS1, TARP) 0.464379003217242 12 0.0196530512705387 1.4260119726587 100 0.781426171183242 4 2 2 -11.9922872262689 LTS-025 chr7 38402561 38402580 20 * TRG-AS1 NA 0 NA 1.06 1 NA NA NA NA NA LTS-025 chr7 38402581 39508061 1105481 * c(TRG-AS1, POU6F2-AS1, POU6F2, VPS41, AMPH, FAM183BP) 0.426060137824884 20 0.103556188663577 1.034103668243 609 0.292448036500908 4 2 2 -7.14932498775384 LTS-025 chr7 39508062 39893564 385503 * c(LINC00265, YAE1D1, RALA, LOC646999) 0 1 NA 1.01424167072276 137 0.338521575254574 3 3 0 -5.77568379116537 LTS-025 chr7 39893565 43483887 3590323 * c(MIR3943, MPLKIP, HECW1, GLI3, INHBA-AS1, INHBA, PSMA2, MRPL32, C7orf25, SUGCT, CDK13) 0.101126011071106 10 0.207672418325914 1.08470260218284 828 0.439388565544675 4 4 0 -6.98971761060304 LTS-025 chr7 43483888 43647879 163992 * c(LOC100506895, HECW1, STK17A) 0.432 1 NA 1.05442108688329 163 0.17210986373764 3 3 0 -5.80701547913473 LTS-025 chr7 43647880 44149374 501495 * c(URGCP-MRPS24, AEBP1, LINC00957, POLM, SPDYE1, DBNL, RASA4CP, UBE2D4, PGAM2, URGCP, COA1, BLVRA, MRPS24, POLR2J4, STK17A) 0.419795386796639 32 0.141011996172369 1.04253721922386 782 0.704046934724547 4 2 2 -6.82909270614863 LTS-025 chr7 44149375 44151468 2094 * c(MIR4649, AEBP1) 0 1 NA 1.13932856011239 31 0.718246004221844 4 4 0 -5.76442610336187 LTS-025 chr7 44151469 44423560 272092 * c(YKT6, AEBP1, NUDCD3, GCK, POLD2, MYL7, CAMK2B) 0.132099271693931 10 0.218185471560322 1.09759529229383 485 0.401331395706239 3 3 0 -6.87234150278217 LTS-025 chr7 44423561 44424211 651 * NUDCD3 0.494 1 NA 0.961041518954951 15 0.269858869640799 3 3 0 -5.76441248007278 LTS-025 chr7 44424212 44800176 375965 * c(TMED4, NUDCD3, NPC1L1, OGDH, DDX56, ZMIZ2) 0.369052827482044 18 0.179174979287328 1.01472048967557 590 0.333715388168456 3 2 1 -6.77262892044789 LTS-025 chr7 44800177 44867707 67531 * c(PPIA, ZMIZ2, H2AFV) 0 1 NA 1.06853998030444 191 0.278278954607727 3 3 0 -5.77283182917586 LTS-025 chr7 44867708 48028472 3160765 * c(RAMP3, ADCY1, PKD1L1, NACAD, SUN3, SNHG15, HUS1, IGFBP1, IGFBP3, C7orf65, PURB, MYO1G, SEPT7P2, TNS3, SNORA5B, SNORA5C, SNORA9, C7orf69, CCM2, LINC00525, TBRG4, H2AFV) 0.140795407802631 37 0.222939972259869 1.06081664424492 1923 0.444948643695017 3 3 0 -6.99825859670211 LTS-025 chr7 48028473 48086269 57797 * c(C7orf57, SUN3) 0.446 1 NA 0.924647469658397 85 0.241965274611146 3 3 0 -5.76459522339591 LTS-025 chr7 48086270 48965427 879158 * c(C7orf57, ABCA13, CDC14C, UPP1) 0.321384803222085 25 0.196782765166736 1.07907850826973 634 0.467869394382119 3 2 1 -6.77896461774064 LTS-025 chr7 48965428 49842231 876804 * c(CDC14C, VWC2) 0 1 NA 0.968406603141664 39 0.223025936050378 3 3 0 -5.77302583014939 LTS-025 chr7 49842232 50800132 957901 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, DDC, GRB10, VWC2, FIGNL1) 0.140841421177254 23 0.214746987812876 1.0193388322358 626 0.593333549113409 3 3 0 -6.88450249132848 LTS-025 chr7 50800133 51083924 283792 * c(COBL, GRB10) NA 0 NA 1.587 1 NA NA NA NA NA LTS-025 chr7 51083925 51287410 203486 * COBL 0.186644212389004 9 0.201032335707468 1.46683204592311 225 0.596972608781107 5 4 1 -6.74670420584578 LTS-025 chr7 51287411 51287533 123 * COBL 0 1 NA 2.12973874500308 3 2.82653327122348 7 7 0 -5.76441013491395 LTS-025 chr7 51287534 51288332 799 * COBL NA 0 NA 1.11105421053138 11 0.158465826542565 4 NA NA -5.76462486147435 LTS-025 chr7 51288333 51384322 95990 * COBL NA 0 NA 0.709 1 NA NA NA NA NA LTS-025 chr7 51384323 54823645 3439323 * c(VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, HPVC1, LINC01446) 0.0453473443457204 11 0.0780144508758124 0.697729717516068 254 0.375268741192428 2 2 0 -6.81782570765759 LTS-025 chr7 54823646 54825112 1467 * SEC61G NA 0 NA 0.62 1 NA NA NA NA NA LTS-025 chr7 54825113 57532512 2707400 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, DKFZp434L192, SEC61G, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.0724300176047263 32 0.0866747663450427 0.588381893270242 1286 0.205060420515197 2 2 0 -7.10189152148846 LTS-025 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 0.927530616549759 13 0.286289055112002 3 NA NA -5.7644112511478 LTS-025 chr7 62758725 63981425 1222701 * c(LINC01005, ZNF679, ZNF680, ZNF727, ZNF733P, YWHAEP1, ZNF736, ZNF735) 0.466 1 NA 0.990967727569288 205 0.277692515975821 3 3 0 -5.78962616204122 LTS-025 chr7 63981426 64312756 331331 * c(LOC100128885, ZNF680, ZNF107, LOC641746, ZNF138) 0.123622341168117 10 0.202627435895976 0.880737379893431 228 0.302139140952313 3 3 0 -6.8540597606089 LTS-025 chr7 64312757 64439613 126857 * c(ZNF273, ZNF117, ZNF138) 0.4 1 NA 0.921993714699438 93 0.262344338850988 3 3 0 -5.76487720872441 LTS-025 chr7 64439614 64643425 203812 * c(ERV3-1, ZNF117, CCT6P3) 0.389159505018018 7 0.177970837632515 1.08584357928627 86 0.594556757503686 4 2 2 -6.74692774333723 LTS-025 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.552 1 NA NA NA NA NA LTS-025 chr7 64643764 65160072 516309 * c(ZNF92, LOC441242, INTS4P2) 0.44747684356596 3 0.0486449723335653 0.603425350566357 95 0.152351280447443 2 1 1 -8.06920718513879 LTS-025 chr7 65160073 66785714 1625642 * c(MIR4650-2, VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, TPST1) 0.336304456680256 31 0.188939570472473 1.03649653721569 908 0.435873831708646 3 2 1 -6.78110789468877 LTS-025 chr7 66785715 66786374 660 * STAG3L4 0.274 1 NA 1.03549691890692 15 0.431158373288914 3 3 0 -5.76442955204609 LTS-025 chr7 66786375 72418963 5632589 * c(MIR3914-1, MIR3914-2, MIR4650-1, SBDSP1, NSUN5P2, AUTS2, TYW1B, SPDYE7P, WBSCR17, STAG3L4, CALN1, POM121) 0.228169359437542 22 0.219608077702547 1.06685042421997 708 0.442692943353732 4 3 1 -7.09897908866396 LTS-025 chr7 72418964 72657188 238225 * c(NSUN5P2, GTF2IRD2P1, STAG3L3, LOC541473, NCF1B, FKBP6, POM121) 0 1 NA 1.20071227914365 95 1.1039524510185 4 4 0 -5.76450551245347 LTS-025 chr7 72657189 73107738 450550 * c(WBSCR22, TRIM50, VPS37D, TBL2, GTF2IRD2P1, MLXIPL, NSUN5, FZD9, DNAJC30, FKBP6, BAZ1B, BCL7B) 0.0785319670734422 12 0.151378188853633 1.01432144658495 720 0.600808705112602 3 3 0 -6.78539139139383 LTS-025 chr7 73107739 73151644 43906 * c(MIR4284, WBSCR22, ABHD11-AS1, STX1A, ABHD11) 0.485 1 NA 1.02348226408273 122 0.217935110145462 3 3 0 -5.76830957590069 LTS-025 chr7 73151645 73280020 128376 * c(WBSCR28, CLDN4, CLDN3, WBSCR27, ABHD11) 0.453570055434836 15 0.0305333541276702 1.05125782178929 196 0.305703691234042 4 2 2 -9.5692750125559 LTS-025 chr7 73280021 73468954 188934 * c(WBSCR28, ELN) 0 1 NA 1.06741733158494 83 0.254955864416707 3 3 0 -5.79192933915642 LTS-025 chr7 73468955 75028452 1559498 * c(ELN, GTF2I, GTF2IP1, TRIM73, NA, GTF2IRD2B, LIMK1, STAG3L2, PMS2P5, STAG3L1, RFC2, NCF1, NCF1C, MIR590, GATSL2, EIF4H, CLIP2, LAT2, RCC1L, GTF2IRD2, GTF2IRD1) 0.21884137866295 26 0.22494781959037 1.0279484059157 909 0.387894760403659 3 2 1 -6.9244956755632 LTS-025 chr7 75028453 75034158 5706 * TRIM73 NA 0 NA 1.992 1 NA NA NA NA NA LTS-025 chr7 75034159 75544455 510297 * c(POM121C, CCL26, NSUN5P1, HIP1, TRIM73, SPDYE5, PMS2P3, POR, RHBDD2, CCL24) 0.31109709832123 14 0.13484961098356 1.4365742536429 491 0.433078070219476 5 3 2 -6.8175576061105 LTS-025 chr7 75544456 75692910 148455 * c(MIR4651, MDH2, STYXL1, POR, SNORA14A, TMEM120A) 0 1 NA 1.40086890792742 237 0.476667008427694 5 5 0 -5.76744542684866 LTS-025 chr7 75692911 77423014 1730104 * c(PMS2P9, LOC100133091, APTR, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, GSAP, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, UPK3B) 0.0691312970453148 13 0.140835237432129 1.41033623729562 1146 0.597831588885069 5 5 0 -6.81469498619328 LTS-025 chr7 77423015 77423152 138 * TMEM60 0.384 1 NA 1.07527562512252 5 0.196242961657227 3 3 0 -5.76444802805913 LTS-025 chr7 77423153 77538297 115145 * c(PHTF2, TMEM60) 0.264779432847922 4 0.167148636448721 1.4642910259635 55 0.507590549882448 4 3 1 -6.74077562935739 LTS-025 chr7 77538298 77539549 1252 * PHTF2 NA 0 NA 1.746 1 NA NA NA NA NA LTS-025 chr7 77539550 86782302 9242753 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, PHTF2, CACNA2D1, CD36, SEMA3E, MAGI2, DMTF1) 0.259599501996768 48 0.163628491543132 1.59752530179348 2445 0.50268718489518 5 4 1 -6.81562013597322 LTS-025 chr7 86782303 86794204 11902 * DMTF1 NA 0 NA 2.037 1 NA NA NA NA NA LTS-025 chr7 86794205 87190569 396365 * c(TP53TG1, ABCB1, ABCB4, CROT, TMEM243, DMTF1) 0.203017725145844 8 0.12959380221071 1.95821145013672 512 0.56070875301534 6 5 1 -6.75139295844856 LTS-025 chr7 87190570 87190668 99 * ABCB1 NA 0 NA 1.765 1 NA NA NA NA NA LTS-025 chr7 87190669 89864573 2673905 * c(DBF4, RUNDC3B, C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, ABCB1, ADAM22, SLC25A40, SRI, STEAP4) 0.203324962434225 26 0.17813399019148 1.52169069391384 1286 0.489509204597225 5 4 1 -6.73642162736215 LTS-025 chr7 89864574 89909158 44585 * c(STEAP2, CFAP69) 0 1 NA 1.54694579585801 173 0.67546063673899 5 5 0 -5.76441745717123 LTS-025 chr7 89909159 89938698 29540 * CFAP69 0 1 NA 1.68573139206116 43 0.547570000885115 6 6 0 -5.7647777767353 LTS-025 chr7 89938699 89939345 647 * CFAP69 NA 0 NA 2.041 1 NA NA NA NA NA LTS-025 chr7 89939346 90747475 808130 * c(LOC101409256, CDK14, CFAP69, GTPBP10, CLDN12) 0.177257905815901 7 0.236339948863013 2.10261177729673 325 0.455010273242193 7 6 1 -6.73703427547513 LTS-025 chr7 90747476 92100343 1352868 * c(AKAP9, CYP51A1, LRRD1, CDK14, ANKIB1, GATAD1, MTERF1, FZD1, KRIT1) 0.0246556647204766 8 0.112076424818068 1.42663725420856 1042 0.436182539157702 5 5 0 -6.75380916028851 LTS-025 chr7 92100344 92236164 135821 * c(CDK6, FAM133B, PEX1, RBM48, NA) 0.279 1 NA 1.3908482354356 323 0.267073105803681 5 5 0 -5.77474533375132 LTS-025 chr7 92236165 92243719 7555 * CDK6 0.387319589320325 10 0.0359512014943713 1.40372196716445 170 0.423957218451253 4 2 2 -6.89490598451129 LTS-025 chr7 92243720 92762182 518463 * c(CDK6, SAMD9L, SAMD9) 0 1 NA 1.41986748224713 249 0.516617093006388 5 5 0 -5.77087980477678 LTS-025 chr7 92762183 94996786 2234604 * c(MIR4652, BET1, COL1A2, SAMD9L, PEG10, HEPACAM2, GNG11, GNGT1, PON1, PON3, PPP1R9A, VPS50, MIR489, CASD1, MIR653, TFPI2, CALCR, SGCE) 0.0939972990203054 21 0.156970167016963 1.50693979439161 1599 0.528706006660149 5 5 0 -6.85300468665635 LTS-025 chr7 94996787 95167204 170418 * c(ASB4, PON1, PON2, PON3) 0.33 1 NA 1.55346651907413 117 0.264928037151313 5 5 0 -5.76475480121801 LTS-025 chr7 95167205 97613998 2446794 * c(LOC100506136, SLC25A13, DLX5, DLX6, DYNC1I1, DLX6-AS1, MGC72080, C7orf76, ASNS, PDK4, ASB4, SDHAF3, TAC1, MIR591, SHFM1) 0.278103647118855 24 0.156793405797085 1.48208402946973 733 0.40896328800167 5 4 1 -6.83347928697137 LTS-025 chr7 97613999 97800789 186791 * c(LMTK2, OCM2) 0 1 NA 1.38557659893727 63 0.349698600384833 5 5 0 -5.77337733064651 LTS-025 chr7 97800790 99569626 1768837 * c(GS1-259H13.2, MIR3609, ATP5J2-PTCD1, CYP3A7-CYP3A51P, ARPC1B, ARPC1A, CPSF4, PDAP1, CYP3A7, CYP3A4, CYP3A5, BHLHA15, ZSCAN25, FAM200A, TMEM130, LMTK2, ZKSCAN5, BRI3, TECPR1, PTCD1, ZNF789, GJC3, KPNA7, NPTX2, BAIAP2L1, AZGP1, SMURF1, CYP3A43, ZNF655, OR2AE1, TRRAP, ZNF394, MYH16, BUD31, TRIM4, ATP5J2) 0.108534904628093 49 0.159760915652321 1.44912493703264 2813 0.633010572717131 5 5 0 -6.90641113432192 LTS-025 chr7 99569627 99633417 63791 * c(AZGP1, AZGP1P1, ZKSCAN1) 0.397 1 NA 1.32318347524505 107 0.260377430430428 4 4 0 -5.76706631632225 LTS-025 chr7 99633418 100172559 539142 * c(SAP25, MIR4658, STAG3, COPS6, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PMS2P1, ZCWPW1, C7orf43, MEPCE, TAF6, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.307920306195567 51 0.115230612762612 1.39124166151354 1669 0.405947140601964 4 3 1 -6.84640728973105 LTS-025 chr7 100172560 100173905 1346 * LRCH4 0 1 NA 1.63045145902511 25 0.576205018490236 5 5 0 -5.76442001284204 LTS-025 chr7 100173906 100371062 197157 * c(PCOLCE-AS1, POP7, EPO, FBXO24, GNB2, LRCH4, PCOLCE, ACTL6B, MOSPD3, GIGYF1, TFR2, ZAN) 0.0521535569035218 11 0.145781592552945 1.45635950251461 843 0.463043306036094 5 5 0 -6.7575743320466 LTS-025 chr7 100371063 100371473 411 * ZAN 0.287 1 NA 1.98738900698895 7 1.88783830774526 7 7 0 -5.76441041583497 LTS-025 chr7 100371474 100549499 178026 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.328839885511569 21 0.0949557290330103 1.56571833803078 575 4.55017718099279 6 4 2 -6.73342677516771 LTS-025 chr7 100549500 100549573 74 * character(0) 0.286 1 NA 3.256 1 NA NA NA NA NA LTS-025 chr7 100549574 100550191 618 * character(0) 0.388461375677622 24 0.0506385135837439 2.81327943332839 36 1.9950823183876 15 8 7 -6.82199148025166 LTS-025 chr7 100550192 100550203 12 * character(0) 0.085 1 NA 1.66571446582684 3 0.073111786555475 5 5 0 -5.76441908640039 LTS-025 chr7 100550204 100550385 182 * character(0) 0.202481033731238 6 0.105729213875195 2.13384424239862 11 0.574116427850025 20 16 4 -6.73505541545262 LTS-025 chr7 100550386 100550396 11 * character(0) 0.409 1 NA 1.137 1 NA NA NA NA NA LTS-025 chr7 100550397 100551363 967 * character(0) 0.240958329836663 26 0.085221602533991 0.674008767729976 69 0.505727046210248 13 10 3 -6.74033921074157 LTS-025 chr7 100551364 100551566 203 * character(0) 0.279327026443246 11 0.0850311172988507 2.09974029216599 15 0.276302336132688 11 8 3 -6.73363450511534 LTS-025 chr7 100551567 100551578 12 * character(0) 0.397 1 NA 2.252 1 NA NA NA NA NA LTS-025 chr7 100551579 100553092 1514 * character(0) 0.350343159358803 46 0.107138485487073 1.97859478568027 83 1.15290186586399 8 5 3 -6.73307058137299 LTS-025 chr7 100553093 100554932 1840 * character(0) NA 0 NA 1.685 1 NA NA NA NA NA LTS-025 chr7 100554933 100612969 58037 * MUC12 0.382132675137246 22 0.0705009287341731 1.59603030141142 86 0.977999744306307 6 3 3 -6.75630598437019 LTS-025 chr7 100612970 100616285 3316 * MUC12 0 1 NA 1.35120094642878 11 0.510192120676123 4 4 0 -5.76447142689544 LTS-025 chr7 100616286 102417809 1801524 * c(RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MUC12, MIR5090, RASA4, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, CLDN15, POLR2J2, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.21857596940935 72 0.16674268688813 1.46067559344421 2134 0.621148964810335 5 4 1 -6.73911276921874 LTS-025 chr7 102417810 102453796 35987 * c(FAM185A, FBXL13) 0 1 NA 1.36065948471886 20 0.691117668403107 4 4 0 -5.76483138453067 LTS-025 chr7 102453797 104785717 2331921 * c(RPL19P12, KMT2E-AS1, LINC01004, LRRC17, FBXL13, NAPEPLD, DNAJC2, DPY19L2P2, SLC26A5, LHFPL3, ORC5, KMT2E, RELN, PSMC2, LHFPL3-AS1, SRPK2, LHFPL3-AS2, ARMC10, PMPCB) 0.109286988081015 22 0.164086425332369 1.42925823425328 1603 0.488031530277419 5 5 0 -6.91998127452068 LTS-025 chr7 104785718 104844519 58802 * SRPK2 0.338 1 NA 1.25275275367951 45 0.370316152125792 4 4 0 -5.76445992054591 LTS-025 chr7 104844520 107738882 2894363 * c(EFCAB10, NAMPT, COG5, DUS4L, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LAMB1, SLC26A4, PIK3CG, PUS7, PRKAR2B, BCAP29, RINT1, SRPK2, SYPL1, CBLL1) 0.303753461160964 34 0.107483597388927 1.43260698897678 2337 0.371338771331954 5 3 2 -6.94707770608317 LTS-025 chr7 107738883 107743498 4616 * LAMB4 0 1 NA 1.64137722797326 5 0.571817453388754 5 5 0 -5.76445213985551 LTS-025 chr7 107743499 107747072 3574 * LAMB4 0.144058823058258 2 0.207889393668845 1.39910965248766 25 0.449752198438207 8 7 1 -6.73645208461949 LTS-025 chr7 107747073 107747719 647 * LAMB4 NA 0 NA 1.812 1 NA NA NA NA NA LTS-025 chr7 107747720 115608338 7860619 * c(MIR3666, ZNF277, BMT2, C7orf66, THAP5, TFEC, LAMB4, LSMEM1, MDFIC, IFRD1, LINC00998, DNAJB9, EIF3IP1, NRCAM, PNPLA8, GPR85, LRRN3, PPP1R3A, TMEM168, IMMP2L, FOXP2, DOCK4) 0.18687660015391 32 0.172120547474447 1.51051238770816 2120 0.593706582705259 5 4 1 -6.752711709263 LTS-025 chr7 115608339 115850675 242337 * c(TFEC, TES) 0.382 1 NA 1.41063540682945 23 0.342725826419401 5 5 0 -5.77253420517305 LTS-025 chr7 115850676 116528240 677565 * c(TES, MET, CAPZA2, CAV1, CAV2) 0.377305284925783 10 0.0341760149812701 1.54402402768198 446 0.808984637299507 6 3 3 -6.79055795918785 LTS-025 chr7 116528241 116544553 16313 * CAPZA2 0 1 NA 1.50808277549598 15 0.80354355083918 5 5 0 -5.7644132203983 LTS-025 chr7 116544554 122377146 5832593 * c(AASS, FAM3C, CFTR, ASZ1, FEZF1-AS1, RNF133, TSPAN12, ST7-OT4, KCND2, RNF148, FEZF1, WNT16, LSM8, ING3, ANKRD7, PTPRZ1, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2) 0.195940821691634 48 0.173869458653561 1.54456724140193 2343 0.546347611713976 5 4 1 -6.74237200440169 LTS-025 chr7 122377147 122774603 397457 * c(TAS2R16, SLC13A1, CADPS2) 0.34 1 NA 1.52699200139143 110 0.356951243858425 5 5 0 -5.76441624793752 LTS-025 chr7 122774604 127224872 4450269 * c(ASB15, IQUB, C7orf77, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, LMOD2, NDUFA5, SLC13A1, SPAM1, MIR592, TMEM229A, GCC1, WASL) 0.303047248102536 24 0.120208989210277 1.51035988110261 1136 0.395222246830337 5 3 2 -6.86784349159797 LTS-025 chr7 127224873 127230192 5320 * c(ARF5, GCC1) 0 1 NA 1.43512903728405 35 0.25759770276652 5 5 0 -5.76460621597848 LTS-025 chr7 127230193 127896361 666169 * c(SND1, SND1-IT1, FSCN3, ARF5, LEP, MIR129-1, PAX4, LRRC4, MIR593) 0 9 0 1.58781389256481 443 0.61090299747558 0 0 0 -Inf LTS-025 chr7 127896362 127897021 660 * LEP 0.412 1 NA 1.498762963758 17 0.335530539067696 5 5 0 -5.76441160588158 LTS-025 chr7 127897022 127963754 66733 * c(MGC27345, LEP, RBM28) 0 1 NA 1.52904317821616 50 0.714915770406214 5 5 0 -5.76441015158335 LTS-025 chr7 127963755 127964573 819 * RBM28 NA 0 NA 1.22 1 NA NA NA NA NA LTS-025 chr7 127964574 128415860 451287 * c(HILPDA, FAM71F2, IMPDH1, PRRT4, LINC01000, RBM28, METTL2B, OPN1SW, CALU, FAM71F1) 0.350713622340899 21 0.0402112872095338 1.35379938051469 665 0.355569511689209 5 3 2 -6.79710114683451 LTS-025 chr7 128415861 128434724 18864 * CCDC136 0 1 NA 1.34343942978728 31 0.500235256482344 4 4 0 -5.76472773902401 LTS-025 chr7 128434725 128454997 20273 * CCDC136 NA 0 NA 1.30194249488768 77 0.464328296853699 4 NA NA -5.76456518209 LTS-025 chr7 128454998 128455663 666 * CCDC136 NA 0 NA 1.688 1 NA NA NA NA NA LTS-025 chr7 128455664 128527353 71690 * c(LOC100130705, FLNC, KCP, CCDC136, ATP6V1F) 0.0478598322712963 6 0.142886901662352 1.66929659116277 423 0.526240841527046 5 5 0 -6.75170851237873 LTS-025 chr7 128527354 128528957 1604 * KCP NA 0 NA 1.307 1 NA NA NA NA NA LTS-025 chr7 128528958 128589449 60492 * c(IRF5, KCP) 0.0980665255494244 8 0.185730988259902 1.58271262267677 176 0.739118563828635 10 9 1 -6.76405512502939 LTS-025 chr7 128589450 128589488 39 * IRF5 0.304 1 NA 1.77773349604794 3 0.220674722914368 6 6 0 -5.76441044453447 LTS-025 chr7 128589489 138732497 10143009 * c(LOC100130880, SMKR1, MIR4468, RNA5SP244, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, TMEM213, KLHDC10, AKR1B1, NUP205, AHCYL2, TNPO3, SLC13A4, COPG2, TPI1P2, FLJ40288, WDR91, MESTIT1, TSPAN33, AGBL3, STRA8, LOC349160, IRF5, LINC-PINT, FAM180A, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, CNOT4, NRF1, ATP6V0A4, CPA4, ZC3HC1, PODXL, CHCHD3, TMEM140, ZC3HAV1, NA NA NA NA NA NA NA NA NA LTS-025 AKR1B10, MIR490, STRIP2, PTN, KIAA1549, EXOC4, NA, C7orf73, CREB3L2, SMO, BPGM, AKR1D1, UBE2H, LUZP6, C7orf49, CALD1, SLC35B4, TMEM209, TRIM24, PLXNA4, DGKI, ZC3HAV1L, CPA5, CEP41) 0.220357903266572 180 0.168447025326667 1.47521243150355 6293 0.561033743934427 5 4 1 -6.7587465869823 LTS-025 NA NA NA NA LTS-025 chr7 138732498 138874741 142244 * c(ZC3HAV1, TTC26) 0 1 NA 1.44913293365319 206 0.38403028079978 5 5 0 -5.76610600156886 LTS-025 chr7 138874742 139715709 840968 * c(LOC100129148, C7orf55-LUC7L2, CLEC2L, FMC1, UBN2, HIPK2, KLRG2, LUC7L2, TBXAS1) 0.0265662763445341 16 0.09275 1.50018942307498 905 0.599879502839083 5 5 0 -6.73425193382824 LTS-025 chr7 139715710 139724358 8649 * c(PARP12, TBXAS1) 0.382 1 NA 1.4417356115677 37 0.343319872035591 5 5 0 -5.76456472142426 LTS-025 chr7 139724359 140774467 1050109 * c(JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MKRN1, DENND2A, RAB19, NDUFB2, MRPS33, PARP12, BRAF, KDM7A, SLC37A3, ADCK2) 0.296482981621493 24 0.128875628170077 1.39794967358539 988 0.407452171552846 4 3 1 -6.82824478108356 LTS-025 chr7 140774468 140912417 137950 * TMEM178B 0 1 NA 2.42419862717297 3 3.15025226503106 8 8 0 -5.76441032391728 LTS-025 chr7 140912418 141537448 625031 * c(TMEM178B, PRSS37, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, SSBP1) 0.038883217539581 6 0.157175591828587 1.43175760909457 565 0.574536439682847 5 5 0 -6.74380327666852 LTS-025 chr7 141537449 141537724 276 * PRSS37 NA 0 NA 1.625 1 NA NA NA NA NA LTS-025 chr7 141537725 142032571 494847 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, TAS2R38, NA, MGAM, MGAM2) 0.137903199089377 26 0.159148503460906 1.55642008394377 892 0.709345183923425 6 5 1 -6.79524149874996 LTS-025 chr7 142032572 142045446 12875 * character(0) 0.328 1 NA 1.91931029369211 3 2.05075725851046 6 6 0 -5.76441489316006 LTS-025 chr7 142045447 142498897 453451 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.252241439831618 54 0.152137940140481 1.70539288377395 408 2.11438683193816 8 6 2 -6.74144468639786 LTS-025 chr7 142498898 142561103 62206 * EPHB6 0 1 NA 1.41584864150729 39 0.518999529355264 5 5 0 -5.76523963635181 LTS-025 chr7 142561104 142622266 61163 * c(EPHB6, TRPV6, TRPV5) 0.0327210092796793 10 0.133448117259106 1.51304520111386 264 0.615633244083023 5 5 0 -6.73595160578485 LTS-025 chr7 142622267 142622714 448 * TRPV5 0.32 1 NA 1.32686312466075 11 0.459014180806888 4 4 0 -5.76441662135155 LTS-025 chr7 142622715 142636704 13990 * c(C7orf34, TRPV5) 0.372944035145593 9 0.0239866861219117 1.39374165899898 65 0.710144816284787 4 2 2 -6.75457799722633 LTS-025 chr7 142636705 142639609 2905 * c(C7orf34, KEL) 0 1 NA 1.51860454372558 27 0.957082301980103 5 5 0 -5.76441023644127 LTS-025 chr7 142639610 143792754 1153145 * c(CLCN1, OR9A2, TMEM139, OR6B1, OR2F2, LOC154761, EPHA1, TAS2R39, TAS2R40, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR6V1, OR2A12, GSTK1, KEL, OR2A25, OR2A5, CTAGE15, PIP, ZYX, CASP2, OR6W1P, FAM131B, TCAF1) 0.0826450942198297 19 0.149604371046629 1.58095228553052 1216 0.899301288883283 5 5 0 -6.82652992854817 LTS-025 chr7 143792755 143792991 237 * OR2A12 0.382 1 NA 1.5131619350996 3 2.59727940994675 5 5 0 -5.76441013714793 LTS-025 chr7 143792992 143840031 47040 * c(OR2A14, OR2A12, OR2A2) 0.382220143527923 6 0.0199139816879163 1.46769720309414 57 0.431001278571567 4 2 2 -7.01282022516473 LTS-025 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.74 1 NA NA NA NA NA LTS-025 chr7 143883365 144074420 191056 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.323 1 NA 1.10189777688119 160 0.710030960852762 4 4 0 -5.76738439705111 LTS-025 chr7 144074421 144075785 1365 * ARHGEF5 NA 0 NA 2.3 1 NA NA NA NA NA LTS-025 chr7 144075786 149152770 5076985 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, C7orf33, EZH2, CNTNAP2, TPK1, ZNF777, ZNF398, ARHGEF5, ZNF212, ZNF282, CUL1, PDIA4) 0.208272005665916 37 0.178757368230506 1.46331248031795 1542 0.663654703679618 5 4 1 -6.7478602402214 LTS-025 chr7 149152771 149172237 19467 * c(ZNF746, ZNF777) 0 1 NA 1.60180656579765 59 0.912378678996071 5 5 0 -5.76443985566477 LTS-025 chr7 149172238 149577309 405072 * c(ZNF746, ATP6V0E2, ZNF467, SSPO, ATP6V0E2-AS1, ZNF862, ZNF767P, KRBA1) 0.0256550556505432 20 0.0874302579202418 1.55909596763006 1088 0.605353928435459 5 5 0 -6.73365949991733 LTS-025 chr7 149577310 149945095 367786 * c(ATP6V0E2, ACTR3C) 0.228 1 NA 1.42846146686193 113 0.431711111236562 5 5 0 -5.76996218572305 LTS-025 chr7 149945096 150864235 919140 * c(GIMAP1-GIMAP5, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, GBX1, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, KCNH2, GIMAP6, NOS3, GIMAP4, GIMAP5, TMEM176A, RARRES2, SLC4A2, ACTR3C, LRRC61, LOC728743, TMUB1, ASIC3) 0.229535859772319 68 0.167896959286536 1.46047464967472 1994 0.501965368973582 5 4 1 -6.74142700290663 LTS-025 chr7 150864236 150909617 45382 * c(ABCF2, ASB10, GBX1) 0.328 1 NA 1.57300453305631 79 0.376243531594281 5 5 0 -5.76455964645071 LTS-025 chr7 150909618 151573795 664178 * c(WDR86-AS1, MIR3907, ABCF2, CRYGN, WDR86, PRKAG2, NUB1, CHPF2, RHEB, SMARCD3, MIR671) 0.336290498768846 19 0.100645867492286 1.46764772668436 721 0.456107013494953 5 3 2 -6.76960805066558 LTS-025 chr7 151573796 151684334 110539 * c(PRKAG2-AS1, GALNTL5, PRKAG2) 0 1 NA 1.45395245797591 27 0.243911577318211 5 5 0 -5.76728808159145 LTS-025 chr7 151684335 154685256 3000922 * c(LINC01003, GALNTL5, DPP6, FABP5P3, ACTR3B, KMT2C, GALNT11, XRCC2) 0.18123785643098 20 0.176449485838388 1.44952095152125 1094 0.464549358002314 5 4 1 -6.78081019102367 LTS-025 chr7 154685257 154736287 51031 * c(PAXIP1-AS2, DPP6, PAXIP1) 0.107148809715792 3 0.201495243947179 1.23841127051462 51 1.03777201432949 9 8 1 -6.75503578541733 LTS-025 chr7 154736288 154738409 2122 * c(PAXIP1-AS2, PAXIP1) 0.376 1 NA 1.2993044801008 23 0.347171427395746 4 4 0 -5.76443695152805 LTS-025 chr7 154738410 154990003 251594 * c(HTR5A-AS1, PAXIP1-AS2, PAXIP1-AS1, PAXIP1, HTR5A) 0.356365898751762 10 0.030464004260037 1.32717021754678 247 0.366684122077338 5 3 2 -6.76442666326396 LTS-025 chr7 154990004 155101115 111112 * INSIG1 0 1 NA 1.2544553960655 65 0.323970457312914 4 4 0 -5.76455822322986 LTS-025 chr7 155101116 155493765 392650 * c(RBM33, EN2, CNPY1, INSIG1) 0.115821544064196 5 0.162632100152461 1.31350655252869 289 0.713719063733592 7 6 1 -6.87744226504512 LTS-025 chr7 155493766 155758243 264478 * c(RBM33, SHH) 0.0836675989606009 4 0.169 1.60325752244216 398 0.597821798707618 5 5 0 -6.80929562362119 LTS-025 chr7 155758244 156469465 711222 * c(C7orf13, RNF32, LOC285889, LINC00244) 0.0869077191697422 3 0.162312455878572 1.44635234033101 150 0.534931772563136 5 5 0 -6.82811979299039 LTS-025 chr7 156469466 156475447 5982 * c(RNF32, LMBR1) 0.425 1 NA 1.41223420572438 49 0.414533727077006 5 5 0 -5.76454356652879 LTS-025 chr7 156475448 156764431 288984 * c(LMBR1, NOM1) 0.342691017063667 17 0.0985729798319051 1.35210500996222 252 0.410557519659969 5 3 2 -6.76724251277887 LTS-025 chr7 156764432 156764780 349 * NOM1 0 1 NA 1.69558586104832 9 1.5301626638295 6 6 0 -5.76441061036817 LTS-025 chr7 156764781 157333483 568703 * c(DNAJB6, MNX1, PTPRN2, NOM1, MNX1-AS1, UBE3C) 0.159752772764949 28 0.185238870525166 1.50421719938147 437 0.917228028789329 6 5 1 -6.75734742464642 LTS-025 chr7 157333484 157800899 467416 * c(LOC100506585, MIR153-2, PTPRN2) 0.32 1 NA 1.48814593406002 133 0.22432231427909 5 5 0 -5.76864526696742 LTS-025 chr7 157800900 158930775 1129876 * c(MIR5707, LINC00689, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2) 0.387933376227258 57 0.0763421430601574 1.38756483002732 802 0.368022054490107 4 2 2 -6.83873334845464 LTS-025 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 1.28840730511451 19 0.3475679579307 4 NA NA -5.76524286769602 LTS-025 chr8 182757 182934 178 * ZNF596 0.25 1 NA 0.389640800573675 3 0.254939862189759 1 1 0 -5.76442651060626 LTS-025 chr8 182935 7320350 7137416 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.0869074664739413 92 0.0811283798860398 0.620155443956942 2351 0.287322143844144 2 2 0 -6.94720514538779 LTS-025 chr8 7320351 8175394 855044 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, DEFB107A, FAM86B3P, USP17L8, FAM90A7P, FAM90A10P, DEFB107B, USP17L3, SPAG11A) 0.219 2 0.309712770159708 0.41193361111068 88 0.661962058960038 1 1 0 -6.86723641363 LTS-025 chr8 8175395 9414503 1239109 * c(MIR4660, CLDN23, LOC157273, SGK223, PPP1R3B, TNKS, ERI1, MFHAS1) 0.0880045642729941 10 0.0554605966229879 0.626205299224716 562 3.41300033691786 1 1 0 -6.75404396088972 LTS-025 chr8 9414504 10691310 1276807 * c(MIR1322, LINC00599, PRSS55, C8orf74, MIR124-1, MSRA, PINX1, MIR597, SOX7, TNKS, RP1L1) 0.0749563787641912 21 0.0488922040723019 0.660617302578289 817 0.212786379325967 2 2 0 -6.89640571439882 LTS-025 chr8 10691311 10756346 65036 * c(XKR6, PINX1, SOX7) 0 1 NA 0.607463069817776 80 0.410444425500031 2 2 0 -5.76532329130885 LTS-025 chr8 10756347 11420658 664312 * c(TDH, XKR6, BLK, MTMR9, MIR598, FAM167A, SLC35G5, FAM167A-AS1) 0.0403615197090047 31 0.049492217265874 0.663297651331113 742 0.550998236045667 2 2 0 -6.7551913589044 LTS-025 chr8 11420659 11421395 737 * BLK NA 0 NA 0.44 1 NA NA NA NA NA LTS-025 chr8 11421396 11565775 144380 * c(GATA4, BLK, LINC00208) 0 3 0 0.580345926776899 29 0.50176822314062 0 0 0 -Inf LTS-025 chr8 11565776 11616410 50635 * GATA4 0.123 1 NA 0.605209193035129 45 0.1311413879611 2 2 0 -5.77221427150468 LTS-025 chr8 11616411 18257795 6641385 * c(NAT2, FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, VPS37A, SGCZ, CTSB, C8orf48, FDFT1, FGL1, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, MICU3, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, ASAH1, MSR1, MIR383, PCM1, ZDHHC2, PDGFRL, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, SLC7A2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, NAT1, MTMR7, LONRF1 NA NA NA NA NA NA NA NA NA LTS-025 ) 0.108801324284888 83 0.0673171580276033 0.611562829693927 2499 0.403930097266353 2 2 0 -7.23881779819006 LTS-025 NA NA NA NA LTS-025 chr8 18257796 18257854 59 * NAT2 0.09 1 NA 0.937756663029709 3 0.998978144572409 3 3 0 -5.76441013510333 LTS-025 chr8 18257855 26944848 8686994 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, PNMA2, ADAM28, LZTS1, NKX2-6, ADRA1A, PEBP4, CDCA2, DPYSL2, EGR3, R3HCC1, LGI3, DMTN, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, GFRA2, ADAMDEC1, GNRH1, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, ATP6V1B2, C8orf58, KCTD9, PIWIL2, INTS10, PPP2R2A, PPP3CC, CSGALNACT1, HR, BIN3, CCAR2, SH2D4A, PDLIM2, SFTPC, NA NA NA NA NA NA NA NA NA LTS-025 EBF2, FAM160B2, BMP1, SLC18A1, POLR3D, BNIP3L, STC1, NUDT18, DOCK5, BIN3-IT1, REEP4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, PHYHIP) 0.0617461552917031 142 0.065098760483759 0.599145658476461 6590 0.2422117380126 2 2 0 -7.23388740894089 LTS-025 NA NA NA NA LTS-025 chr8 26944849 27092814 147966 * character(0) NA 0 NA 1.624 1 NA NA NA NA NA LTS-025 chr8 27092815 27142672 49858 * c(TRIM35, STMN4) 0.059082740653542 3 0.0420039680665212 1.04484680826453 82 0.444577415914645 2 2 0 -6.79735956556947 LTS-025 chr8 27142673 27143174 502 * TRIM35 0.475 1 NA 1.06429843195239 10 0.295753651240728 3 3 0 -5.76446211033305 LTS-025 chr8 27143175 27326815 183641 * c(CHRNA2, PTK2B, TRIM35) 0.149078102652827 22 0.21293496354826 1.09418050319369 344 0.615857796083325 6 5 1 -6.82297926659287 LTS-025 chr8 27326816 27328511 1696 * CHRNA2 0.466 1 NA 0.990369271474856 17 0.415361138047362 3 3 0 -5.76442545956524 LTS-025 chr8 27328512 29005128 1676617 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, CHRNA2, CLU, ESCO2, FBXO16, EPHX2, EXTL3, KIF13B, SCARA5, NUGGC, SCARA3, PNOC, ELP3, CCDC25, INTS9, PBK, ZNF395, HMBOX1, FZD3) 0.352600020676007 53 0.196916378780996 1.03904381522851 1991 0.42512608076848 3 2 1 -6.79483965146183 LTS-025 chr8 29005129 29024974 19846 * KIF13B 0 1 NA 1.11510882319604 25 0.535876518736671 4 4 0 -5.76484556840686 LTS-025 chr8 29024975 30648421 1623447 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, DCTN6, RBPMS, DUSP4, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, SARAF, PPP2CB, LINC00589, MBOAT4, UBXN8) 0.108315968662942 13 0.20182535608534 0.987843474629377 785 0.303101601695231 3 3 0 -6.8349642010225 LTS-025 chr8 30648422 30702525 54104 * c(PPP2CB, TEX15) 0.495 1 NA 1.0253345007054 187 0.237406988284605 3 3 0 -5.76863564024579 LTS-025 chr8 30702526 32453358 1750833 * c(NRG1-IT3, PURG, NRG1, TEX15, WRN) 0.433873314104936 17 0.115345931109552 1.1043146858618 415 0.311532024394582 4 2 2 -7.05356304558934 LTS-025 chr8 32453359 32611817 158459 * NRG1 0 1 NA 1.11219248614778 77 0.244639085092483 4 4 0 -5.78190634398149 LTS-025 chr8 32611818 35648770 3036953 * c(UNC5D, NRG1, DUSP26, RNF122, TTI2, MAK16, FUT10) 0.187453919880615 11 0.24860845447483 1.05055513267528 545 0.357617909410503 3 2 1 -7.09205918304534 LTS-025 chr8 35648771 36662779 1014009 * c(UNC5D, KCNU1) 0 1 NA 1.21435829347985 119 0.295306103514344 4 4 0 -5.76647736222959 LTS-025 chr8 36662780 37614504 951725 * c(ERLIN2, KCNU1, LOC728024, ZNF703) 0.391588378542868 9 0.158158148699332 1.03647577498271 520 0.302600007654377 3 2 1 -6.87972032418213 LTS-025 chr8 37614505 37688406 73902 * c(ERLIN2, PROSC, ADGRA2) 0 1 NA 1.00418843182402 148 0.224381597007342 3 3 0 -5.76811104545197 LTS-025 chr8 37688407 38050361 361955 * c(GOT1L1, ADRB3, EIF4EBP1, ADGRA2, LSM1, BRF2, STAR, RAB11FIP1, ASH2L, BAG4) 0.120754100714862 11 0.213876302397607 1.02946634168179 712 0.401077226190642 3 3 0 -6.83779259574584 LTS-025 chr8 38050362 38065114 14753 * BAG4 NA 0 NA 1.457 1 NA NA NA NA NA LTS-025 chr8 38065115 38110405 45291 * c(DDHD2, BAG4) 0 2 0 1.46814046948851 154 0.350311027541692 0 0 0 -Inf LTS-025 chr8 38110406 38280546 170141 * c(LETM2, FGFR1, DDHD2, WHSC1L1, PLPP5) 0 1 NA 1.01213884472751 487 0.230215564177297 3 3 0 -5.77458172133101 LTS-025 chr8 38280547 38458109 177563 * c(FGFR1, RNF5P1, C8orf86) 0.488 1 NA 1.04392018767216 101 0.211880944993846 3 3 0 -5.78979654154842 LTS-025 chr8 38458110 38991720 533611 * c(HTRA4, ADAM32, RNF5P1, PLEKHA2, TACC1, TM2D2, ADAM9) 0.427648737003309 19 0.116686765186077 0.999085360872412 647 0.284705892723511 4 2 2 -7.05680446250746 LTS-025 chr8 38991721 39091463 99743 * ADAM32 0 1 NA 1.18467821133269 57 0.523111128256956 4 4 0 -5.76479517601225 LTS-025 chr8 39091464 39142479 51016 * ADAM32 0.465 1 NA 1.10705954447749 51 0.265426246910549 4 4 0 -5.76963641928984 LTS-025 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.094 1 NA NA NA NA NA LTS-025 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.089925077084475 55 0.00685688231026572 0 NA NA -16.1185851290576 LTS-025 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.074 1 NA NA NA NA NA LTS-025 chr8 39442068 41503727 2061660 * c(GPAT4, IDO2, ADAM2, IDO1, GOLGA7, C8orf4, SFRP1, ZMAT4, GINS4, ADAM18) 0.31275118951689 20 0.207126429734925 1.07482423912183 900 0.326489385513598 3 2 1 -6.93530598089548 LTS-025 chr8 41503728 41504669 942 * NKX6-3 0 1 NA 0.91285417281361 17 0.607405536107564 3 3 0 -5.76441155955011 LTS-025 chr8 41504670 41553926 49257 * c(NKX6-3, ANK1, MIR486-1) 0.0704687696601733 10 0.141353811409527 1.08550215367394 230 0.788567644300326 2 2 0 -6.75865315394352 LTS-025 chr8 41553927 41553928 2 * c(NKX6-3, ANK1) 0.418 1 NA 2.165 1 NA NA NA NA NA LTS-025 chr8 41553929 42032957 479029 * c(AP3M2, NKX6-3, ANK1, PLAT, KAT6A) 0.208493613657529 12 0.243389122911266 1.06078859838167 549 0.463764001213276 4 3 1 -6.79499116905329 LTS-025 chr8 42032958 42044871 11914 * PLAT 0.465 1 NA 0.91980438112073 51 0.258786804524648 3 3 0 -5.76446624749854 LTS-025 chr8 42044872 42295022 250151 * c(DKK4, IKBKB, PLAT, POLB, SLC20A2, VDAC3) 0.3681478512838 11 0.186155506841116 1.01094066542227 415 0.331876269928135 3 2 1 -6.76488313688419 LTS-025 chr8 42295023 42620130 325108 * c(CHRNB3, SMIM19, SLC20A2, CHRNA6) 0 1 NA 0.978650629671966 179 0.349912755789733 3 3 0 -5.76684284672185 LTS-025 chr8 42620131 43211997 591867 * c(MIR4469, HGSNAT, FNTA, POTEA, THAP1, RNF170, POMK, HOOK3, CHRNA6) 0 10 0 1.06382580727005 636 0.437469836400311 0 0 0 -Inf LTS-025 chr8 43211998 43212050 53 * POTEA NA 0 NA 0.822698614133922 3 0.0121243556529822 3 NA NA -5.76824726006512 LTS-025 chr8 47752736 48743353 990618 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0 1 NA 0.994115281165925 429 0.329688015623389 3 3 0 -5.78076473790237 LTS-025 chr8 48743354 49987136 1243783 * c(MCM4, C8orf22, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.160948768923431 7 0.239856802518264 1.03942071618507 649 0.326623617002064 3 3 0 -6.96113405706808 LTS-025 chr8 49987137 52567346 2580210 * c(PXDNL, C8orf22, SNTG1) 0.171736307150938 10 0.206591088330978 1.47643605387223 316 0.581417954697829 5 4 1 -6.76663607277535 LTS-025 chr8 52567347 52731018 163672 * c(PCMTD1, PXDNL) 0.322 1 NA 1.44250602889543 31 0.335828998344444 5 5 0 -5.76741149363155 LTS-025 chr8 52731019 52762394 31376 * PCMTD1 0.24942801605146 13 0.149684925503796 1.276805041411 101 0.449973649613546 4 3 1 -6.73883305165035 LTS-025 chr8 52762395 53025102 262708 * c(PCMTD1, ST18) 0 1 NA 1.42920336583218 83 0.494940359188547 5 5 0 -5.76738310354161 LTS-025 chr8 53025103 54871160 1846058 * c(NPBWR1, FAM150A, OPRK1, ATP6V1H, RGS20, ST18, RB1CC1) 0.145676404830415 11 0.202552125726598 1.45965376509405 663 0.493879270402615 5 4 1 -6.81516997827256 LTS-025 chr8 54871161 55049131 177971 * c(LYPLA1, MRPL15, TCEA1, RGS20) 0.236 1 NA 1.35470090770893 231 0.29791902973427 4 4 0 -5.77460869353048 LTS-025 chr8 55049132 56076886 1027755 * c(XKR4, MRPL15, RP1, SOX17) 0.317732263214385 11 0.110921839803776 1.63436916604054 369 0.674198486464961 6 4 2 -6.75335127142386 LTS-025 chr8 56076887 56185430 108544 * XKR4 0 1 NA 1.53990317311546 11 1.41624746810333 5 5 0 -5.76441155436869 LTS-025 chr8 56185431 56725751 540321 * c(SBF1P1, XKR4, TMEM68, TGS1) 0.25921499965312 10 0.148847573040342 1.4506652447325 277 0.528639385454303 4 3 1 -6.7634258495247 LTS-025 chr8 56725752 57025607 299856 * c(SNORD54, LYN, MOS, RPS20, TGS1) 0 1 NA 1.42672095346097 149 0.744359783689865 5 5 0 -5.76598847496574 LTS-025 chr8 57025608 57354506 328899 * c(SDR16C5, MOS, PENK, PLAG1, CHCHD7) 0.0939666388991756 11 0.185396332218305 1.58796280703993 355 1.22811784891823 9 8 1 -6.78671645221777 LTS-025 chr8 57354507 57871922 517416 * c(LINC00968, PENK, IMPAD1) 0.325 1 NA 1.49113061330951 65 0.321608695287636 5 5 0 -5.7663723061289 LTS-025 chr8 57871923 59361206 1489284 * c(LINC01606, UBXN2B, LINC00588, LOC286177, IMPAD1, FAM110B) 0.246762720461143 12 0.158328389077508 1.47151968719716 260 0.426336649003271 5 4 1 -6.76248657706001 LTS-025 chr8 59361207 59363853 2647 * UBXN2B 0.344 1 NA 1.39361361219068 56 0.297391735184158 5 5 0 -5.76456607871931 LTS-025 chr8 59363854 61535417 2171564 * c(UBXN2B, CYP7A1, RAB2A, SDCBP, CA8, NSMAF, TOX) 0.346075403355298 12 0.0419606597862447 1.39892913391937 573 0.311321855485877 5 3 2 -6.90453998743293 LTS-025 chr8 61535418 61653871 118454 * c(CHD7, RAB2A) 0 1 NA 1.39341405750816 21 0.387348114626575 5 5 0 -5.76853515527501 LTS-025 chr8 61653872 63891438 2237567 * c(LOC100130298, MIR4470, CLVS1, NKAIN3, ASPH, CHD7, UG0898H09) 0.147148946235274 14 0.181824710297378 1.51832362726098 774 0.533291447575277 5 4 1 -6.81896416855606 LTS-025 chr8 63891439 63903178 11740 * c(NKAIN3, UG0898H09) 0.292 1 NA 1.4486337890085 13 0.195392930874936 5 5 0 -5.7649577777812 LTS-025 chr8 63903179 66439551 2536373 * c(MIR124-2HG, YTHDF3-AS1, YTHDF3, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, LINC00251, TTPA, GGH, CYP7B1) 0.287679939965964 9 0.124914415145375 1.48182966606177 355 0.610772279418149 4 3 1 -6.88641883145703 LTS-025 chr8 66439552 66444766 5215 * LINC01299 0 1 NA 1.48355904467657 35 0.567823353997119 5 5 0 -5.76441925743863 LTS-025 chr8 66444767 67109297 664531 * c(LINC00967, CRH, LINC01299, PDE7A, ARMC1, TRIM55, DNAJC5B, MTFR1) 0.276831389910241 9 0.143544418212622 1.38075856834241 463 0.475558020225038 4 3 1 -6.75952165024237 LTS-025 chr8 67109298 67359459 250162 * c(LINC00967, RRS1-AS1, ADHFE1, RRS1) 0 1 NA 1.42176922845392 73 0.278747933765233 5 5 0 -5.77474443955631 LTS-025 chr8 67359460 67547578 188119 * c(ADHFE1, C8orf46, MYBL1, VCPIP1) 0 1 NA 1.42429098678557 430 0.383924676398254 5 5 0 -5.76831498024816 LTS-025 chr8 67547579 67563674 16096 * VCPIP1 NA 0 NA 1.214 1 NA NA NA NA NA LTS-025 chr8 67563675 73926083 6362409 * c(TCF24, MSC-AS1, LINC01592, C8orf44-SGK3, NCOA2, ARFGEF1, COPS5, C8orf34, MCMDC2, EYA1, SULF1, TRAM1, SGK3, PTTG3P, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LACTB2, C8orf44, CPA6, PRDM14, SNHG6, SNORD87, TERF1, CSPP1, VCPIP1, PREX2, SLCO5A1, TRPA1, MSC, KCNB2) 0.0293108378141764 56 0.0338421421369213 1.10831798239698 2948 0.377237990322959 4 4 0 -7.03463293431823 LTS-025 chr8 73926084 74939092 1013009 * c(STAU2-AS1, C8orf89, RDH10, SBSPON, LY96, STAU2, TMEM70, UBE2W, RPL7, TCEB1, TERF1) 0.0412529747934595 19 0.0385721773497048 1.00002422598128 822 0.381553539395966 3 3 0 -6.76182642716094 LTS-025 chr8 74939093 74941158 2066 * LY96 NA 0 NA 1.409 1 NA NA NA NA NA LTS-025 chr8 74941159 100899572 25958414 * c(MIR875, C8orf88, LRRC69, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, POP1, WWP1, STMN2, SLC26A7, OSR2, COX6C, FAM92A1, NDUFAF6, DCAF4L2, RALYL, C8orf37, VPS13B, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ERICH5, FABP4, FABP5, HEY1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, NA NA NA NA NA NA NA NA NA LTS-025 GEM, SNORA72, TRIQK, DPY19L4, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, C8orf87, RBM12B, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, PEX2, RPL30, ZNF704, LINC01298, SDC2, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, MIR599, TPD52, OSGIN2, UQCRB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67, CCNE2, MTDH, CHMP4C, TP53INP1, PTDSS1) 0.0322718418248379 165 0.0379847043943103 1.08306390568788 9609 0.375195182921076 4 4 0 -8.22297753040737 LTS-025 NA NA NA NA LTS-025 chr8 100899573 100899607 35 * COX6C NA 0 NA 1.011 1 NA NA NA NA NA LTS-025 chr8 100899608 101016412 116805 * c(COX6C, RGS22) 0 1 NA 0.971000298717226 73 0.206338551397936 3 3 0 -5.76601581099217 LTS-025 chr8 101016413 101053980 37568 * RGS22 0.115 1 NA 1.06634777868239 23 0.333399249082144 3 3 0 -5.7675720940351 LTS-025 chr8 101053981 113236788 12182808 * c(MIR3151, BAALC-AS1, MIR4471, MIR5680, CSMD3, CTHRC1, ABRA, BAALC-AS2, ANKRD46, TMEM74, SNX31, DPYS, ZFPM2, DCAF13, RNF19A, RGS22, PABPC1, KCNV1, ANGPT1, FBXO43, LRP12, RSPO2, EIF3E, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, OXR1, SYBU, ENY2, SPAG1, KLF10, TRHR, YWHAZ, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.0490862468911761 97 0.0452400408626126 0.980810227080189 4624 0.336605209248784 3 3 0 -6.89491343196354 LTS-025 chr8 113236789 113237045 257 * CSMD3 0.083 1 NA 0.939255775133166 5 0.405307660919455 3 3 0 -5.76441013840052 LTS-025 chr8 113237046 114629090 1392045 * c(MIR2053, CSMD3) 0.243571960802145 7 0.14891832213219 1.00993712802067 374 0.564917103661722 4 3 1 -6.84879940819954 LTS-025 chr8 114629091 116425860 1796770 * TRPS1 0.0152760684084345 2 0.00707106781186548 1.86576673836055 106 0.630823652175278 7 7 0 -6.86885790396911 LTS-025 chr8 116425861 117654773 1228913 * c(LINC00536, TRPS1) 0.018 1 NA 1.96330187136887 129 0.409150837053085 6 6 0 -5.78815062673802 LTS-025 chr8 117654774 120795881 3141108 * c(MIR3610, COLEC10, MAL2, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, TAF2, UTP23, EIF3H, MED30) 0.012753821821651 21 0.0222136808982127 1.86712903664491 1220 3.68447068315807 8 8 0 -6.75805725160775 LTS-025 chr8 120795882 120797371 1490 * TAF2 NA 0 NA 1.491 1 NA NA NA NA NA LTS-025 chr8 120797372 121549830 752459 * c(MTBP, MRPL13, DEPTOR, SNTB1, TAF2, COL14A1, DSCC1) 0.0421673961041438 19 0.0139302775126322 1.45280626049039 701 0.417342088686486 3 3 0 -7.3212928549008 LTS-025 chr8 121549831 121561134 11304 * SNTB1 0 1 NA 1.60153023023344 41 0.974382913538164 5 5 0 -5.76442515259624 LTS-025 chr8 121561135 123683681 2122547 * c(HAS2, HAS2-AS1, SNTB1) 0.00598740017542965 3 0.0346410161513775 1.5691793710964 151 0.525447575682186 5 5 0 -6.88432018545013 LTS-025 chr8 123683682 128432298 4748617 * c(LINC00861, FAM83A-AS1, ZHX1-C8orf76, MIR4663, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, POU5F1B, TRMT12, WDYHV1, FER1L6, SQLE, CASC8, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.0237849357716797 51 0.0184676081022857 1.84884875795628 2504 0.790608515863912 6 6 0 -6.75493821601921 LTS-025 chr8 128432299 128748336 316038 * c(MYC, CASC8) NA 0 NA 2.964 1 NA NA NA NA NA LTS-025 chr8 128748337 144103845 15355509 * c(CDC42P3, LOC100133669, LOC100288181, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR4472-1, MIR5194, HHLA1, NDRG1, KHDRBS3, PTP4A3, ADCY8, LYPD2, TMEM71, CYP11B1, CYP11B2, COL22A1, TSNARE1, DENND3, EFR3A, ARC, LRRC6, AGO2, GML, GPR20, LINC01591, ASAP1-IT1, KCNQ3, MROH5, LY6E, MIR30B, MIR30D, MYC, ASAP1, FAM135B, PHF20L1, KCNK9, THEM6, FAM49B, CHRAC1, LY6K, GSDMC, SLURP1, SLC45A4, PTK2, NA NA NA NA NA NA NA NA NA LTS-025 ADGRB1, ZFAT, PVT1, ZFAT-AS1, LINC00051, ST3GAL1, SLA, LYNX1, TG, LINC00977, OC90, LINC01300, PSCA, TRAPPC9, LY6D, JRK, WISP1, HPYR1) 0.0190222225354613 182 0.0290274893317919 2.32948548625262 5620 1.09712222212549 8 8 0 -6.74741841796094 LTS-025 NA NA NA NA LTS-025 chr8 144103846 144105056 1211 * character(0) NA 0 NA 2.008 1 NA NA NA NA NA LTS-025 chr8 144105057 144732450 627394 * c(RHPN1, TOP1MT, EEF1D, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6H, MROH6, PYCRL, TSTA3, RHPN1-AS1, GSDMD, ZNF696, TIGD5, NAPRT, ZNF623) 0.0214486133430782 38 0.0216506104566054 2.16587225145839 1176 0.725450956123788 7 7 0 -6.74792750315705 LTS-025 chr8 144732451 144733336 886 * ZNF623 0 1 NA 2.1188195442926 21 0.983040858037665 7 7 0 -5.76441013467621 LTS-025 chr8 144733337 145723037 989701 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, CYC1, ADCK5, MAPK15, PUF60, BOP1, SCRIB, FBXL6, OPLAH, ZNF707, BREA2, FAM83H, GRINA, CPSF1, HSF1, NRBP2, WDR97, TMEM249, SPATC1, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, SCX, MIR661, MROH1, SLC52A2, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, PPP1R16A, DGAT1, GPAA1, FOXH1, KIFC2, ZNF623) 0.00956824105903281 72 0.0158217711675874 2.29550475896906 3352 0.997256521994746 9 9 0 -6.82037427937861 LTS-025 chr8 145723038 145723419 382 * PPP1R16A 0.039 1 NA 2.55825247477078 5 1.43795208543261 9 9 0 -5.76441048771984 LTS-025 chr8 145723420 145737816 14397 * c(MFSD3, GPT, PPP1R16A, RECQL4) 0.0852182648322221 9 0.094715363062177 2.3038744403934 175 0.643885941719627 13 12 1 -6.73938708552345 LTS-025 chr8 145737817 145738653 837 * RECQL4 0 1 NA 2.47621621436295 17 0.985003489841534 8 8 0 -5.7644104839858 LTS-025 chr8 145738654 146280745 542092 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF517, C8orf82, LRRC24, ZNF250, RPL8, C8orf33, ZNF7, ZNF16, ARHGAP39, ZNF34, ZNF251, RECQL4, LRRC14) 0.0170944585171161 35 0.0174154862023392 2.1305323468191 1235 0.732536062214976 7 7 0 -6.73494502747272 LTS-025 chr8 146280746 146280905 160 * C8orf33 NA 0 NA 0.752535293368402 3 0.542131902769058 2 NA NA -5.76441757135761 LTS-025 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.049 1 NA 0.864560720032653 5 0.465444626137202 3 3 0 -5.76720288082623 LTS-025 chr9 154796 33675629 33520834 * c(CDKN2B-AS1, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, RCL1, TOPORS, CDKN2A, CDKN2B, DMRT2, RRAGA, PSIP1, INSL6, PTENP1, UHRF2, PLIN2, TAF1L, C9orf66, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, KDM4C, MLANA, KANK1, DDX58, SLC24A2, B4GALT1, RANBP6, SPINK4, GLDC, TUSC1, LURAP1L, CD274, NA NA NA NA NA NA NA NA NA LTS-025 ANXA2P2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, AQP3, AQP7, INSL4, JAK2, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, PLGRKT, CBWD1, KLHL9, IFNK, BAG1, MIR491, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, DMRTA1, SH3GL2, LRRC19, SLC1A1, NOL6, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.0409307652893731 256 0.0428097762837612 1.04836032280111 11612 0.390482315630239 3 3 0 -7.98273622631501 LTS-025 NA NA NA NA LTS-025 chr9 33675630 33794894 119265 * c(PTENP1, PRSS3) 0.396 1 NA 1.06849657750319 27 0.416479506683318 3 3 0 -5.77104812745595 LTS-025 chr9 33794895 33799163 4269 * PRSS3 0.295242438746266 10 0.111472766978208 1.33077523539599 33 0.762376793324666 7 5 2 -6.73512501896681 LTS-025 chr9 33799164 34106484 307321 * c(SNORD121A, SNORD121B, DCAF12, UBE2R2, UBAP2, PRSS3) 0 1 NA 1.00813290466126 356 0.288780057266628 3 3 0 -5.77484742200899 LTS-025 chr9 34106485 34725213 618729 * c(SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, KIAA1161, CCL19, CCL21, C9orf24) 0.0455713738921234 21 0.0337859508700062 1.04791646773669 1151 0.29859589791422 3 3 0 -6.83390310728236 LTS-025 chr9 34725214 34726322 1109 * FAM205A 0.0229019945774904 2 0.0353553390593274 0.528909822294117 40 0.344594280203137 5 5 0 -6.73946911194208 LTS-025 chr9 34726323 35958194 1231872 * c(MIR4667, CREB3, UNC13B, C9orf131, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, FAM205A, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.065715384479021 27 0.0836210588397533 1.05568682820575 2829 0.396931709430891 3 3 0 -6.87177419925257 LTS-025 chr9 35958195 36036452 78258 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-025 chr9 36036453 38624960 2588508 * c(GNE, FAM95C, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, FAM201A, TRMT10B, ALDH1B1, FRMPD1, ANKRD18A, FBXO10, IGFBPL1, TOMM5, PAX5, EXOSC3, POLR1E, SHB, DCAF10, ZCCHC7, RECK, CCIN, SLC25A51, GRHPR, MELK, ZBTB5) 0.0517735384657058 26 0.0631724988850735 0.580038893035389 2112 0.224203086514957 2 2 0 -7.07991289105679 LTS-025 chr9 39133018 39178215 45198 * CNTNAP3 0.183 1 NA 3.06469674728958 40 0.90076519287343 10 10 0 -5.76442474113226 LTS-025 chr9 40498471 43816026 3317556 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.732326075217187 39 0.233213446162491 2 NA NA -6.28124280697917 LTS-025 chr9 43816027 43816599 573 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.247 1 NA NA NA NA NA LTS-025 chr9 43816600 44175697 359098 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.3572201177801 47 0.376387312326898 1 NA NA -5.76467662050855 LTS-025 chr9 65602571 66457127 854557 * LOC286297 0.441 1 NA 0.868831766418268 4 0.235939964115168 3 3 0 -5.82270077066271 LTS-025 chr9 66457128 71549847 5092720 * c(FRG1HP, FAM27B, LOC100133920, FAM122A, TMEM252, LOC286297, FOXD4L3, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.354425210247198 24 0.0892202940454985 1.03858873090976 317 0.319604931099926 3 2 1 -7.05428384260623 LTS-025 chr9 71549848 71627758 77911 * c(PRKACG, PIP5K1B) 0 1 NA 1.15417460397902 35 0.355249520546812 4 4 0 -5.76612475968742 LTS-025 chr9 71627759 72969433 1341675 * c(MAMDC2-AS1, SMC5-AS1, BANCR, C9orf135, SMC5, FXN, MAMDC2, APBA1, PTAR1, C9orf135-AS1, PRKACG, FAM189A2, TJP2) 0.0910918139281808 16 0.19178876183621 1.0771120171829 998 0.433006953629298 3 3 0 -6.86026363843757 LTS-025 chr9 72969434 73028142 58709 * c(SMC5, KLF9) 0.488 1 NA 0.945447569159937 91 0.228524607994624 3 3 0 -5.76442421043465 LTS-025 chr9 73028143 74975736 1947594 * c(C9orf57, C9orf85, TMEM2, MIR204, ABHD17B, KLF9, ZFAND5, TRPM3, GDA) 0.333479110112905 29 0.202282285810472 1.06247866265964 908 0.46148922033558 3 2 1 -6.81281736880854 LTS-025 chr9 74975737 75406894 431158 * c(TMC1, ZFAND5) 0 1 NA 1.10566517830704 69 0.303875187506759 4 4 0 -5.79872167148105 LTS-025 chr9 75406895 77418719 2011825 * c(TMC1, TRPM6, ALDH1A1, ANXA1, RORB) 0.150188714488069 8 0.220092675285403 1.06736239823599 504 0.353583229244764 3 3 0 -7.04092765870602 LTS-025 chr9 77418720 77436641 17922 * TRPM6 0.443 1 NA 1.02578107920288 31 0.125863546184209 3 3 0 -5.76943994299861 LTS-025 chr9 77436642 79323756 1887115 * c(CARNMT1, TRPM6, PRUNE2, GCNT1, OSTF1, PCSK5, NMRK1, C9orf40, RFK, RPSAP9) 0.228152844200103 24 0.232529657606652 1.03824509185314 1119 0.454339311525809 3 2 1 -6.89875339580358 LTS-025 chr9 79323757 79471995 148239 * c(PRUNE2, PCA3) 0.45 1 NA 1.01181961460477 87 0.288152812881009 3 3 0 -5.7700221669234 LTS-025 chr9 79471996 87426054 7954059 * c(VPS13A-AS1, RASEF, PRUNE2, VPS13A, FRMD3, GNAQ, PSAT1, UBQLN1, HNRNPK, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, MIR7-1, IDNK, FOXB2, NTRK2, KIF27, SLC28A3, TLE1, TLE4, RMI1, GKAP1, CEP78, C9orf64, GNA14) 0.364835147978446 71 0.185681425973925 1.04828252338792 2784 0.326162028705221 3 2 1 -7.23471223882158 LTS-025 chr9 87426055 87427462 1408 * NTRK2 0 1 NA 0.983012731373193 29 0.551820500282492 3 3 0 -5.76441538832882 LTS-025 chr9 87427463 88951825 1524363 * c(AGTPBP1, LOC389765, C9orf153, NTRK2, GOLM1, NAA35, ZCCHC6, ISCA1) 0.0805779902270114 13 0.211721454649675 1.03999496391896 890 0.437899222975665 3 3 0 -6.80735255347363 LTS-025 chr9 88951826 89763574 811749 * c(GAS1RR, GAS1, C9orf170, LOC440173, LOC494127, ZCCHC6) 0.49 1 NA 1.07009428103925 131 0.326022312080267 3 3 0 -5.8390335511728 LTS-025 chr9 89763575 90388539 624965 * c(CTSL, DAPK1, CTSL3P, C9orf170) 0.447524850637096 10 0.0213304685576499 1.07725804717885 314 0.278466464067515 4 2 2 -10.7884794616781 LTS-025 chr9 90388540 90501034 112495 * c(CTSLP8, SPATA31E1, CTSL3P, LOC392364) 0 1 NA 1.15304859807945 67 0.545877939663536 4 4 0 -5.76548907604849 LTS-025 chr9 90501035 91686035 1185001 * c(MIR4289, SPIN1, NXNL2, S1PR3, CDK20, C9orf47, SPATA31E1, LOC286238, SPATA31C1, SHC3, SPATA31C2) 0.211726664881176 17 0.233410787214806 1.09180874117705 663 0.6919694790487 4 3 1 -6.78560272570883 LTS-025 chr9 91686036 91690082 4047 * SHC3 0.476 1 NA 0.936145203924474 9 0.150216048114411 3 3 0 -5.76441317909218 LTS-025 chr9 91690083 92011763 321681 * c(MIR3153, SEMA4D, CKS2, SHC3, SECISBP2) 0.394442711093784 13 0.17507119430941 1.01091833108025 359 0.337140443516108 4 2 2 -6.81380731919622 LTS-025 chr9 92011764 92785775 774012 * c(UNQ6494, MIR4290, SEMA4D, GADD45G, MIR4290HG) 0 1 NA 1.01606697099909 55 0.522338417977869 3 3 0 -5.77438205716904 LTS-025 chr9 92785776 93376184 590409 * c(MIR4290, MIR4290HG, LINC01501, DIRAS2) NA 0 NA 1.1086978104887 97 0.308114293656309 4 NA NA -5.80781702715609 LTS-025 chr9 93376185 93606053 229869 * c(DIRAS2, SYK) NA 0 NA 0.617 1 NA NA NA NA NA LTS-025 chr9 93606054 103349784 9743731 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, LOC100129316, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, LOC100507346, MSANTD3-TMEFF1, MIR4670, NAMA, ANP32B, SPTLC1, SEC61B, SLC35D2, COL15A1, PTPDC1, ANKRD19P, CTSV, MIRLET7DHG, FAM120AOS, LINC00475, TSTD2, ZNF782, LOC158434, LOC158435, ZNF169, ECM2, AAED1, ZNF367, ANKS6, SUSD3, FANCC, FBP1, ZNF510, NA NA NA NA NA NA NA NA NA LTS-025 HABP4, FOXE1, ERP44, FAM120A, BICD2, TDRD7, INVS, LOC286359, HSD17B3, IARS, GAS2L1P2, MURC, ERCC6L2, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, LOC441454, LOC441455, NUTM2G, STX17-AS1, C9orf129, NCBP1, NFIL3, NINJ1, ROR2, OMD, OGN, TRMO, PHF2, NANS, NUTM2F, ASPN, TEX10, AUH, STX17, NOL8, TBC1D2, HEMGN, BARX1, PTCH1, LOC100499484-C9ORF174, IPPK, WNK2, SYK, TGFBR1, TMOD1, CORO2A, XPA, GALNT12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 NR4A3, ZNF484, CARD19, MFSD14C, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, GABBR2, TRIM14) 0.0783378867807515 158 0.0795245324018251 0.589403307804921 7833 0.386049386276296 2 2 0 -7.13104795908666 LTS-025 NA NA NA NA LTS-025 chr9 103349785 114090395 10740611 * c(MIR548Q, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, IKBKAP, CTNNAL1, NA NA NA NA NA NA NA NA NA LTS-025 KLF4) 0.0751717603270741 127 0.0784236417896482 0.628707669404762 5124 0.950652986339424 2 2 0 -6.80137063667795 LTS-025 NA NA NA NA LTS-025 chr9 114090396 115336784 1246389 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.0952576090244931 26 0.0663387112882412 0.561238244923808 1265 0.163794971741501 2 2 0 -7.51809153387448 LTS-025 chr9 115336785 117074810 1738026 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.0633334686340473 61 0.0620335622186092 0.607186331697904 2515 0.230568168980002 2 2 0 -6.83929107778997 LTS-025 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.231 1 NA NA NA NA NA LTS-025 chr9 117085363 117089956 4594 * ORM1 0.0835699326484611 2 0.0487903679018718 0.189481447385599 41 0.276985851976454 1 1 0 -6.75114133240082 LTS-025 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.537 1 NA NA NA NA NA LTS-025 chr9 117092173 127302449 10210277 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100288842, LOC100505478, MIR4478, ZBTB6, NEK6, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, RABGAP1, NR5A1, PSMD5-AS1, MORN5, OR1L4, WHRN, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, GGTA1P, GPR21, CRB2, GSN, TNC, ADGRD2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, NA NA NA NA NA NA NA NA NA LTS-025 PDCL, RAB14, RC3H2, STRBP, CDK5RAP2, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, LINC00474, SNORD90, MIR601, TLR4, TRAF1, C5, AKNA, MIR600HG, MRRF, RBM18, LHX2, TNFSF8, ATP6V1G1, TNFSF15) 0.0595948486791755 168 0.0663819144153626 0.610925568709631 6286 0.295421410459592 2 2 0 -6.96692661343044 LTS-025 NA NA NA NA LTS-025 chr9 127302450 127533493 231044 * c(MIR181A2HG, NR6A1, MIR181A2, MIR181B2) NA 0 NA 0.540252517576016 38 0.209613226768769 2 NA NA -5.86498319555945 LTS-025 chr9 127533494 127561559 28066 * c(OLFML2A, NR6A1) 0.435 1 NA 1.12733560730565 15 0.128002790148162 4 4 0 -5.7730163292399 LTS-025 chr9 127561560 127951863 390304 * c(RPL35, OLFML2A, GOLGA1, SCAI, WDR38, PPP6C, ARPC5L) 0.395660471804761 23 0.161766569243775 1.01079750584849 622 0.333704585764865 4 2 2 -6.83352858307953 LTS-025 chr9 127951864 127990353 38490 * c(RABEPK, PPP6C) 0 1 NA 1.0356474623703 59 0.301252363571755 3 3 0 -5.76673934243433 LTS-025 chr9 127990354 129645275 1654922 * c(RABEPK, ZBTB43, GAPVD1, HSPA5, LMX1B, ZBTB34, PBX3, NRON, MAPKAP1, MVB12B) 0.249935127384924 24 0.239356186588045 1.05485803415085 985 0.36924102366925 3 2 1 -6.89298362432277 LTS-025 chr9 129645276 129740101 94826 * c(ZBTB34, RALGPS1) 0.444 1 NA 1.14407344309306 80 0.393473268035108 4 4 0 -5.76657898571595 LTS-025 chr9 129740102 130169874 429773 * c(ANGPTL2, SLC2A8, GARNL3, RALGPS1) 0.375336000028452 12 0.182655890248369 1.02848637225478 547 0.270852922950539 3 2 1 -6.79707566234425 LTS-025 chr9 130169875 130241337 71463 * c(SNORA65, SLC2A8, RPL12, ZNF79, LRSAM1) 0 1 NA 1.02497223037593 146 0.451939238133372 3 3 0 -5.76593828115051 LTS-025 chr9 130241338 130913733 672396 * c(SLC25A25-AS1, SH2D3C, MIR3911, MIR3960, MIR4672, CDK9, SLC25A25, PTRH1, PIP5KL1, TTC16, ENG, AK1, NAIF1, FPGS, ST6GALNAC4, TOR2A, CFAP157, ST6GALNAC6, PTGES2-AS1, LCN2, FAM102A, FAM129B, STXBP1, PTGES2, DPM2, LRSAM1) 0.0653099366566552 12 0.175990702233747 1.02556107744699 1612 0.305072497979922 3 3 0 -6.78205005161237 LTS-025 chr9 130913734 130938661 24928 * c(CIZ1, LCN2, C9orf16) 0.498 1 NA 1.05514849097773 81 0.289284025709793 3 3 0 -5.76674600885996 LTS-025 chr9 130938662 131048320 109659 * c(MIR3154, DNM1, CIZ1, GOLGA2, SWI5, MIR199B) 0.408511109057103 9 0.155809534724647 0.995443229669505 357 0.282669521635402 4 2 2 -6.81067610951376 LTS-025 chr9 131048321 131051253 2933 * SWI5 0 1 NA 1.22288872069443 11 1.63183897935595 4 4 0 -5.76441020360536 LTS-025 chr9 131051254 131085380 34127 * c(TRUB2, SWI5, COQ4) 0.193640077387772 2 0.326683332908185 1.14190980084288 67 0.339762674907152 5 4 1 -6.75105443782499 LTS-025 chr9 131085381 131087309 1929 * COQ4 NA 0 NA 0.643 1 NA NA NA NA NA LTS-025 chr9 131087310 141069927 9982618 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR3689E, MIR4479, LOC101448202, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, NA NA NA NA NA NA NA NA NA LTS-025 ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ABCA2, ENDOG, FCN1, FCN2, DOLK, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, ABL1, FUT7, PHYHD1, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, GLE1, TOR1B, ABO, LCN12, C9orf142, TPRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, OBP2B, OBP2A, QRFP, GLT6D1, C9orf50, PNPLA7, CYSRT1, ENTPD8, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, ODF2, PAEP, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, TOR4A, EXD3, PTPA, RABL6, LRRC8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 INPP5E, NPDC1, BARHL1, SH3GLB2, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, NUP214, LHX3, URM1, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, KYAT1, FUBP3, WDR34, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.0701168090838654 477 0.0736306597743488 0.600688480113642 17075 0.274755228759861 2 2 0 -7.18460416212224 LTS-025 NA NA NA NA LTS-025 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.366344522714743 8 0.20496271437926 1 NA NA -5.76444881508085 LTS-025 chr10 94832 94872 41 * TUBB8 0.27 1 NA 0.868 1 NA NA NA NA NA LTS-025 chr10 94873 931500 836628 * c(MIR5699, ZMYND11, DIP2C, LARP4B, TUBB8, PRR26) 0.123990593644411 17 0.120553380902648 1.50600466846832 663 0.425693353133789 6 5 1 -6.97257021191622 LTS-025 chr10 931501 1018585 87085 * LARP4B 0.328 1 NA 1.58053498788277 11 0.224131130449038 5 5 0 -5.76551915473222 LTS-025 chr10 1018586 6472891 5454306 * c(LINC00704, MIR3155A, PITRM1-AS1, MIR3155B, NET1, ADARB2, PITRM1, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, GTPBP4, GDI2, LINC00700, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, AKR1C6P, LINC00200, LINC00701, LOC399715, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, IDI2-AS1, PRKCQ, ADARB2-AS1, ASB13, TUBAL3, CALML3, AKR1E2, FBXO18, RBM17, AKR1C3, IDI2) 0.285770677988822 122 0.132217700744609 1.44891575053317 2717 0.579608097240605 5 4 1 -6.92262475888 LTS-025 chr10 6472892 6483916 11025 * PRKCQ 0 1 NA 1.60231426759002 3 0.80040989499131 5 5 0 -5.76443230702465 LTS-025 chr10 6483917 7797667 1313751 * c(LINC00707, KIN, ITIH2, PRKCQ-AS1, PRKCQ, SFMBT2, ITIH5) 0.0989722423679577 12 0.156276173565398 1.46076961536983 638 0.526727896673601 5 5 0 -6.87611317399241 LTS-025 chr10 7797668 8097368 299701 * c(KIN, GATA3, GATA3-AS1, ATP5C1, TAF3) 0.365 1 NA 1.37907256037714 259 0.375066914585024 5 5 0 -5.77812369704539 LTS-025 chr10 8097369 11805357 3707989 * c(CELF2, SFTA1P, LINC00710, GATA3, CELF2-AS2, ECHDC3, USP6NL) 0.348326475975845 11 0.127701213776534 1.48990103655725 541 0.439704819433491 5 3 2 -6.74610146448923 LTS-025 chr10 11805358 11805831 474 * ECHDC3 0 1 NA 1.73515958151124 11 0.741581528651007 6 6 0 -5.76441142305878 LTS-025 chr10 11805832 12288346 482515 * c(NUDT5, PROSER2-AS1, PROSER2, UPF2, SEC61A2, DHTKD1, ECHDC3, CDC123) 0.061392890714205 10 0.162971060825739 1.42034167713879 638 0.489086445931316 5 5 0 -6.77207817004368 LTS-025 chr10 12288347 12292286 3940 * CDC123 0.361 1 NA 1.53611763584899 9 0.714397901110516 5 5 0 -5.76441021444962 LTS-025 chr10 12292287 13206233 913947 * c(MIR4480, OPTN, NA, MCM10, CAMK1D, CCDC3, CDC123) 0.307989584162454 18 0.0970151932040456 1.45267441850952 402 0.41073741545093 5 3 2 -6.90977422166237 LTS-025 chr10 13206234 13213212 6979 * MCM10 0 1 NA 1.49074765606966 9 2.15624433010527 5 5 0 -5.76441073542575 LTS-025 chr10 13213213 13487114 273902 * c(UCMA, BEND7, SEPHS1, PHYH, MCM10) 0.128893960132166 10 0.150093896537393 1.47969139818454 390 0.451649952426355 6 5 1 -6.84452731027466 LTS-025 chr10 13487115 13488453 1339 * BEND7 0.37 1 NA 1.46361484710577 28 0.227614010039227 5 5 0 -5.76444040434159 LTS-025 chr10 13488454 16554797 3066344 * c(PPIAP30, MIR1265, RPP38, C10orf111, FAM171A1, BEND7, ACBD7, CDNF, HSPA14, OLAH, FRMD4A, DCLRE1C, MEIG1, SUV39H2, FAM188A, FAM107B, ITGA8, PRPF18, PTER, NMT2) 0.287853743328497 59 0.134035123671212 1.42220224113973 1559 0.446725331184491 4 3 1 -6.92928155183398 LTS-025 chr10 16554798 16556103 1306 * c(C1QL3, PTER) 0 1 NA 1.55902397917405 27 0.719571859489142 5 5 0 -5.76441067785763 LTS-025 chr10 16556104 16982168 426065 * c(C1QL3, RSU1, CUBN) 0.156683403015556 14 0.176757190506085 1.31721186199903 330 0.629910590351936 6 5 1 -6.81362360107864 LTS-025 chr10 16982169 17024615 42447 * CUBN 0.316 1 NA 1.47793788097031 43 0.345035466101989 5 5 0 -5.76466414682823 LTS-025 chr10 17024616 17373617 349002 * c(TRDMT1, ST8SIA6, VIM, CUBN) 0.351647283008132 16 0.0527495655590325 1.3693220077583 430 0.370461538414826 5 3 2 -6.76693434804448 LTS-025 chr10 17373618 17495730 122113 * c(ST8SIA6-AS1, ST8SIA6) 0 1 NA 1.32696063707954 15 0.946946254823266 4 4 0 -5.76482733068628 LTS-025 chr10 17495731 17813397 317667 * c(ST8SIA6, TMEM236, STAM, HACD1) 0.141699231309816 3 0.241332412521264 1.4506013443316 150 0.469036735824149 5 4 1 -6.7923381122218 LTS-025 chr10 17813398 17839549 26152 * TMEM236 0 1 NA 1.05 1 NA NA NA NA NA LTS-025 chr10 17839550 17898391 58842 * c(MRC1, NA, TMEM236) NA 0 NA 0.631275726235532 40 0.474376135517711 2 NA NA -5.76450309054984 LTS-025 chr10 17898392 17905570 7179 * c(MRC1, NA, TMEM236) NA 0 NA 3.015 1 NA NA NA NA NA LTS-025 chr10 17905571 18254637 349067 * c(SLC39A12, MRC1, NA, TMEM236) 0.227642009156605 3 0.208976075185654 1.30319312892269 130 1.035161662496 5 4 1 -6.73979939359223 LTS-025 chr10 18254638 18266836 12199 * SLC39A12 NA 0 NA 1.534 1 NA NA NA NA NA LTS-025 chr10 18266837 21786221 3519385 * c(NEBL-AS1, SLC39A12-AS1, MIR1915, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, C10orf113, CASC10, CACNB2, PLXDC2) 0.258700931258856 35 0.154987546260331 1.60203941447718 1174 0.547664432245354 5 4 1 -6.79247472328438 LTS-025 chr10 21786222 21802396 16175 * character(0) NA 0 NA 1.281 1 NA NA NA NA NA LTS-025 chr10 21802397 28007610 6205214 * c(ABI1, GPR158-AS1, LOC100130992, LOC100499489, COMMD3-BMI1, YME1L1, ENKUR, ARMC3, OTUD1, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, MKX, EBLN1, PTCHD3, SKIDA1, LINC00202-1, LRRC37A6P, PIP4K2A, MYO3A, APBB1IP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, LINC00264, BMI1, MIR603, LINC00202-2, THNSL1, MLLT10, MASTL, ACBD5, SPAG6) 0.22337606136949 68 0.16367747775793 1.48813090086078 3427 0.522628719997328 5 4 1 -6.7444910220466 LTS-025 chr10 28007611 28023367 15757 * MKX NA 0 NA 0.82 1 NA NA NA NA NA LTS-025 chr10 28023368 28260231 236864 * c(MKX, ARMC4) 0.131226193584543 8 0.209606263537819 1.11655604099308 122 0.443604645710848 3 3 0 -6.87673165689609 LTS-025 chr10 28260232 28276273 16042 * ARMC4 0.492 1 NA 0.982719835527748 17 0.213745742991665 3 3 0 -5.76480387223557 LTS-025 chr10 28276274 32141460 3865187 * c(MIR938, LINC00837, MIR5586, LYZL2, MAP3K8, MPP7, WAC-AS1, ZNF438, ZEB1-AS1, BAMBI, PTCHD3P1, WAC, ARMC4, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, LYZL1, ARHGAP12) 0.448631228421613 39 0.0467403890400084 1.02617030071461 1427 0.77736089226781 4 2 2 -8.25182784074594 LTS-025 chr10 32141461 32310178 168718 * c(KIF5B, ARHGAP12) 0 1 NA 0.97340040204639 63 0.220303795738509 3 3 0 -5.76677872842562 LTS-025 chr10 32310179 37505179 5195001 * c(LINC00838, CREM, GJD4, CCNY, NA, ITGB1, KIF5B, PARD3, CCDC7, EPC1, FZD8, CUL2, NRP1, ANKRD30A) 0.353610657618928 34 0.182014487386412 1.00449953667952 1530 0.299424052486796 3 2 1 -6.88704840452019 LTS-025 chr10 37505180 38239285 734106 * c(MTRNR2L7, ZNF33BP1, ZNF25, ZNF248, ANKRD30A) 0 1 NA 1.00699213085765 153 0.196469647338772 3 3 0 -5.81615686645799 LTS-025 chr10 38239286 38672144 432859 * c(LOC100129055, HSD17B7P2, ZNF25, SEPT7P9, ZNF33A, ZNF37A) 0.232048133690992 10 0.24403572142892 1.00653140773284 388 0.327914046928368 3 2 1 -6.83934998784896 LTS-025 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.951830826403278 5 0.162815846894582 3 NA NA -5.76460724488706 LTS-025 chr10 42379879 43701356 1321478 * c(ZNF37BP, MIR5100, RASGEF1A, LOC441666, CSGALNACT2, RET, ZNF33B, LINC00839, BMS1) 0.288238674705033 28 0.219487401863341 1.01739588447353 658 0.47161696998614 3 2 1 -6.7763960695932 LTS-025 chr10 43701357 43881075 179719 * c(RASGEF1A, HNRNPF, FXYD4) 0.422 1 NA 0.928690532284448 43 0.284259734924285 3 3 0 -5.7646467023898 LTS-025 chr10 43881076 44340917 459842 * c(HNRNPA3P1, ZNF485, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, ZNF487, ZNF32, ZNF239) 0.384525686290305 11 0.19114868082678 0.911398302721799 233 0.301468660867551 3 2 1 -6.78431048715306 LTS-025 chr10 44340918 44341016 99 * LINC00619 NA 0 NA 1.036 1 NA NA NA NA NA LTS-025 chr10 44341017 44868856 527840 * c(C10orf142, LINC00840, LINC00841, LINC00619, CXCL12) 0.477956851780758 2 0.0240416305603426 1.14643736336253 92 0.30117625174536 4 2 2 -11.6706311262911 LTS-025 chr10 44868857 44873011 4155 * CXCL12 0 1 NA 1.15703158322784 33 0.356415934242309 4 4 0 -5.76449450075751 LTS-025 chr10 44873012 45936822 1063811 * c(RSU1P2, MIR3156-1, C10orf10, C10orf25, TMEM72-AS1, ALOX5, ANKRD30BP3, CXCL12, TMEM72, ZNF22, OR13A1, RASSF4) 0.224057030418994 10 0.242960810740242 1.09618601881483 444 0.341894125786493 4 3 1 -6.82632742536339 LTS-025 chr10 45936823 45939617 2795 * ALOX5 0.477 1 NA 1.03272109959661 18 0.211739018049829 3 3 0 -5.76473256103962 LTS-025 chr10 45939618 47087501 1147884 * c(AGAP4, MARCH8, ALOX5, FAM21C, PTPN20, GLUD1P7, FAM35BP, NPY4R, NA, NA, SYT15, ZFAND4, GPRIN2) 0.393822797979703 40 0.119262259489168 1.04897022831539 483 0.68316710162175 4 2 2 -6.79938713143206 LTS-025 chr10 47087502 47669192 581691 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0 1 NA 1.10498844803349 55 0.95379749525403 4 4 0 -5.76918425239231 LTS-025 chr10 47669193 48439000 769808 * c(ZNF488, CTSLP2, NA, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.099595762430321 12 0.219080239901164 1.16916016171298 376 0.815506061354778 4 4 0 -6.79852369180112 LTS-025 chr10 48439001 49367224 928224 * c(FRMPD2, PTPN20, GDF10, NA, GLUD1P7, NA, NA, NA, FRMPD2B) 0 1 NA 1.14116601497302 31 0.596688550088278 4 4 0 -5.77425107960891 LTS-025 chr10 49367225 49791002 423778 * c(FRMPD2, NA, MAPK8, ARHGAP22, FRMPD2B) 0.0285433461785473 14 0.118129468925292 1.15681855579885 390 0.625256779122919 4 4 0 -6.73585292124259 LTS-025 chr10 49791003 49860258 69256 * c(NA, ARHGAP22) 0.46 1 NA 1.09588460132777 27 0.144492303051151 4 4 0 -5.79287276557387 LTS-025 chr10 49860259 50531972 671714 * c(MIR4294, FAM170B-AS1, C10orf71, FAM170B, C10orf128, VSTM4, LRRC18, NA, WDFY4, ARHGAP22) 0.379319519452301 28 0.166678761465909 1.06221414062184 688 0.426594840857419 4 2 2 -6.78572257418246 LTS-025 chr10 50531973 50532588 616 * c(C10orf71, NA) 0 1 NA 0.981186655564194 13 0.813475859727241 3 3 0 -5.76441110300894 LTS-025 chr10 50532589 50828646 296058 * c(NA, CHAT, C10orf71, ERCC6, NA, DRGX, SLC18A3) 0.207674140150605 14 0.24504267401396 1.07563592563326 496 0.889339115064427 5 4 1 -6.76151129612527 LTS-025 chr10 50828647 50863147 34501 * c(CHAT, NA) 0.449 1 NA 1.16306950159614 39 0.520881428818488 4 4 0 -5.7646881763454 LTS-025 chr10 50863148 52619811 1756664 * c(TIMM23, CHAT, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MSMB, NA, OGDHL, ASAH2, AGAP7P, ASAH2B, NA, PARGP1, NCOA4, PARG) 0.329136957761677 20 0.192117809251456 1.05001962034764 768 0.426085877897005 3 2 1 -6.80182921321672 LTS-025 chr10 52619812 53059406 439595 * c(A1CF, PRKG1, MIR605) 0.5 1 NA 0.851156630925361 33 0.235667660513956 3 3 0 -5.81199131813278 LTS-025 chr10 53059407 54076271 1016865 * c(PRKG1-AS1, DKK1, CSTF2T, PRKG1, MIR605) 0.461345070113003 10 0.0241847059109678 1.10128200970198 298 0.282006112754084 4 2 2 -10.9561070961176 LTS-025 chr10 54076272 54526340 450069 * c(DKK1, MBL2) 0 1 NA 1.0941331016699 53 0.273443838211841 4 4 0 -5.81723054709221 LTS-025 chr10 54526341 58119879 3593539 * c(MTRNR2L5, ZWINT, MBL2, PCDH15) 0.278983189676239 11 0.220181866976948 1.18463925511898 511 0.405249077647554 4 3 1 -6.75886053590594 LTS-025 chr10 58119880 59952630 1832751 * c(MIR3924, ZWINT, IPMK) 0.474 1 NA 1.04229172407983 46 0.253624611341764 3 3 0 -5.93748115859779 LTS-025 chr10 59952631 61715836 1763206 * c(MRLN, SLC16A9, FAM13C, IPMK, LINC01553, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL) 0.450173978983423 35 0.0989376936606608 1.07625613866535 977 0.314602207303995 4 2 2 -7.31387945775427 LTS-025 chr10 61715837 61718360 2524 * LINC01553 0 1 NA 1.34959236259313 37 0.919119057762563 4 4 0 -5.76442412848222 LTS-025 chr10 61718361 62671374 953014 * c(LINC01553, ANK3, CDK1, RHOBTB1) 0.274084095738825 12 0.232965207442631 1.12178907872576 660 0.298817066698432 4 3 1 -6.79320566404926 LTS-025 chr10 62671375 63167895 496521 * c(TMEM26, RHOBTB1) 0 1 NA 1.08853875677727 33 0.328615841389488 4 4 0 -5.80830066034542 LTS-025 chr10 63167896 63213183 45288 * TMEM26 0 3 0 1.06077354471483 96 0.290467922557875 0 0 0 -Inf LTS-025 chr10 63213184 63422718 209535 * TMEM26 NA 0 NA 1.661 1 NA NA NA NA NA LTS-025 chr10 63422719 64403409 980691 * c(MIR548AV, C10orf107, RTKN2, ZNF365, ARID5B) 0.109255014770149 8 0.199890639743693 1.42395332391564 584 0.494191537248612 5 5 0 -6.85401233220245 LTS-025 chr10 64403410 64415184 11775 * ZNF365 0.285 1 NA 1.36906896138549 19 0.401727017377756 4 4 0 -5.76487178063135 LTS-025 chr10 64415185 70411606 5996422 * c(MIR1296, DNA2, EGR2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, CTNNA3, NRBF2, ANXA2P3, HNRNPH3, LRRTM3, RUFY2, DNAJC12, PBLD, TET1, SLC25A16, MYPN, ADO, JMJD1C-AS1) 0.238994891245192 24 0.170455777553738 1.43472824175536 1928 0.457554839102001 5 4 1 -6.81346380031033 LTS-025 chr10 70411607 70454269 42663 * TET1 NA 0 NA 1.46396885997684 123 0.324605007717974 5 NA NA -5.76487946965457 LTS-025 chr10 70454270 70480988 26719 * CCAR1 NA 0 NA 0.853 1 NA NA NA NA NA LTS-025 chr10 70480989 70652822 171834 * c(STOX1, CCAR1, SNORD98) 0.447 1 NA 1.0546092404867 223 0.338004636008975 3 3 0 -5.77608150369127 LTS-025 chr10 70652823 71267010 614188 * c(STOX1, TSPAN15, KIF1BP, HK1, SRGN, SUPV3L1, TACR2, DDX50, HKDC1, DDX21, VPS26A) 0.389414616375246 15 0.165447733078916 0.982437972519422 878 0.316268606776709 3 2 1 -6.81581593183657 LTS-025 chr10 71267011 71332085 65075 * c(TSPAN15, NEUROG3) 0 1 NA 1.21877935717867 21 1.12189337622568 4 4 0 -5.76441585749799 LTS-025 chr10 71332086 71899486 567401 * c(COL13A1, C10orf35, TYSND1, NEUROG3, H2AFY2, AIFM2) 0.175305198109367 9 0.248392889950131 1.08894065232509 461 0.373958911512701 4 3 1 -6.84715784852065 LTS-025 chr10 71899487 71905472 5986 * TYSND1 0.368 1 NA 1.11143893543301 29 0.221604299410552 4 4 0 -5.76522818586706 LTS-025 chr10 71905473 72327715 422243 * c(EIF4EBP2, TYSND1, PALD1, NODAL, PPA1, LRRC20, SAR1A, NPFFR1) 0.459018282514188 18 0.0333876028810663 1.04663019697563 614 0.278597216920203 4 2 2 -9.53753493273202 LTS-025 chr10 72327716 72360447 32732 * c(PALD1, PRF1) 0 1 NA 1.11909785047183 57 0.307072875107142 4 4 0 -5.76644696801901 LTS-025 chr10 72360448 72513544 153097 * c(ADAMTS14, PRF1) 0.192973254479995 9 0.240467831066398 1.15356940179379 115 0.572846202417991 5 4 1 -6.76091045170915 LTS-025 chr10 72513545 72518009 4465 * ADAMTS14 0.425 1 NA 1.13582070975114 9 0.258389456269235 4 4 0 -5.76469370302063 LTS-025 chr10 72518010 73822243 1304234 * c(ANAPC16, ADAMTS14, UNC5B, TBATA, C10orf105, PCBD1, SLC29A3, PSAP, CDH23, C10orf54, UNC5B-AS1, SGPL1, CHST3, SPOCK2) 0.394842068432114 54 0.15787915329145 1.05457597551358 1549 0.318424232309285 3 2 1 -6.93042131411662 LTS-025 chr10 73822244 74127624 305381 * c(MIR1256, MICU1, ANAPC16, ASCC1, DDIT4, DNAJB12, SPOCK2) 0 1 NA 0.989951575740922 297 0.297431521585658 3 3 0 -5.76970126625909 LTS-025 chr10 74127625 75227310 1099686 * c(MIR1256, MIR4676, MICU1, ECD, MSS51, CFAP70, OIT3, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, PLA2G12B, MCU) 0.0553514053243813 23 0.119384190662906 1.02368782542735 1140 0.358986905891315 3 3 0 -6.78560001019432 LTS-025 chr10 75227311 75257617 30307 * c(USP54, PPP3CB) 0.433 1 NA 1.03431476899703 54 0.239812715185788 3 3 0 -5.76722666339986 LTS-025 chr10 75257618 75530962 273345 * c(USP54, GLUD1P3, MYOZ1, AGAP5, BMS1P4, SYNPO2L, SEC24C) 0.407855484978526 9 0.1533702854025 1.00514000808261 469 0.309583426854664 4 2 2 -6.84440890194407 LTS-025 chr10 75530963 75548545 17583 * c(CHCHD1, FUT11, ZSWIM8, SEC24C) 0 1 NA 1.03070453754196 111 0.219343884623072 3 3 0 -5.76622163347576 LTS-025 chr10 75548546 75575062 26517 * c(ZSWIM8, CAMK2G, NDST2) 0.277387283688574 7 0.246423561025669 1.06236828512718 308 0.340380845420143 4 3 1 -6.73791924030145 LTS-025 chr10 75575063 75576564 1502 * CAMK2G NA 0 NA 0.873 1 NA NA NA NA NA LTS-025 chr10 75576565 75597289 20725 * CAMK2G 0.289149687266201 2 0.336582827844797 0.885072382355531 38 0.295478486988673 3 2 1 -6.74245990052872 LTS-025 chr10 75597290 75612881 15592 * CAMK2G 0.495 1 NA 0.843614470791943 47 0.194537640617494 3 3 0 -5.76736675726766 LTS-025 chr10 75612882 78317195 2704314 * c(ZNF503-AS2, COMTD1, ADK, SAMD8, KAT6B, ZNF503-AS1, AP3M1, DUPD1, C10orf55, DUSP13, PLAU, VCL, VDAC2, CAMK2G, C10orf11, ZNF503) 0.466541265404641 11 0.021290629607668 0.985648083719213 1058 0.235261942621769 4 2 2 -12.920381602363 LTS-025 chr10 78317196 78637284 320089 * KCNMA1 NA 0 NA 2.009 1 NA NA NA NA NA LTS-025 chr10 78637285 78734228 96944 * KCNMA1 0.360528944947174 3 0.013 1.53047994518949 112 0.431492723460049 5 3 2 -6.73379949514181 LTS-025 chr10 78734229 78977190 242962 * KCNMA1 0.302739571448006 3 0.25252590626178 1.02654325436856 133 0.296091090203473 3 2 1 -6.75261384169183 LTS-025 chr10 78977191 79163864 186674 * KCNMA1 NA 0 NA 1.21544505089569 15 0.159563004424435 4 NA NA -5.7655818698808 LTS-025 chr10 79163865 79396134 232270 * KCNMA1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-025 chr10 79396135 79551640 155506 * c(KCNMA1, DLG5) 0.091 1 NA 0.540832371390754 57 0.154141140608438 2 2 0 -5.88763354441987 LTS-025 chr10 79551641 80763544 1211904 * c(DLG5-AS1, LINC00856, POLR3A, ZMIZ1-AS1, LINC00595, RPS24, DLG5) 0.0583860239417842 10 0.0529523895169572 0.625721020650121 497 0.252863513766627 2 2 0 -6.76158679057287 LTS-025 chr10 80763545 80961285 197741 * c(ZMIZ1-AS1, ZMIZ1) NA 0 NA 1.047 1 NA NA NA NA NA LTS-025 chr10 80961286 81113941 152656 * c(PPIF, ZMIZ1) 0.150224791096753 4 0.213 1.08461859119601 256 0.32185184180445 5 4 1 -6.89307951303107 LTS-025 chr10 81113942 81145266 31325 * c(PPIF, ZCCHC24) 0.473 1 NA 0.977329298802207 89 0.201990422410714 3 3 0 -5.76506593509629 LTS-025 chr10 81145267 81317045 171779 * c(EIF5AL1, ZCCHC24, SFTPA2) 0.469429012300473 13 0.0209263053693254 0.95958414316168 187 0.348781365249368 4 2 2 -11.9870003641656 LTS-025 chr10 81317046 81317110 65 * SFTPA2 0 1 NA 1.92126106640531 3 4.44732912356769 6 6 0 -5.76441013988425 LTS-025 chr10 81317111 82033102 715992 * c(BMS1P21, TMEM254-AS1, PLAC9, ANXA11, MAT1A, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.224583655641179 12 0.243881289428552 1.04713926858366 561 0.488212459354072 4 3 1 -6.79757282209379 LTS-025 chr10 82033103 82033594 492 * MAT1A 0.463 1 NA 1.02288325767748 11 0.655044328826128 3 3 0 -5.7644148976565 LTS-025 chr10 82033595 82264423 230829 * c(DYDC1, MAT1A, TSPAN14, FAM213A, DYDC2) 0.387678050799033 11 0.140136427033866 0.999299652177327 197 0.399584325935861 4 2 2 -6.78312621649009 LTS-025 chr10 82264424 82276070 11647 * TSPAN14 0 1 NA 0.956978748820968 31 0.422109574012623 3 3 0 -5.76442106009937 LTS-025 chr10 82276071 85984423 3708353 * c(NRG3, GHITM, LRIT2, SH2D4B, C10orf99, TSPAN14, CDHR1) 0.309799765844885 19 0.220311156884878 1.07835248206861 642 0.381863976936578 3 2 1 -7.0082516800994 LTS-025 chr10 85984424 85994084 9661 * c(LRIT1, LRIT2) 0 1 NA 1.15635002087473 49 0.777020742769379 4 4 0 -5.76445215897623 LTS-025 chr10 85994085 87628972 1634888 * c(GRID1-AS1, LINC00858, LRIT1, GRID1, CCSER2, RGR) 0.159297589885814 9 0.234828365218325 1.11612435914921 392 0.476020127786947 4 3 1 -6.89438989902397 LTS-025 chr10 87628973 88024553 395581 * c(GRID1, MIR346) 0.419 1 NA 1.02937384368141 25 0.383054447826938 3 3 0 -5.77737280927118 LTS-025 chr10 88024554 89463571 1439018 * c(MIR4678, ADIRF, LDB3, AGAP11, WAPL, GLUD1, GRID1, LINC00863, FAM35A, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, PAPSS2, OPN4, MINPP1) 0.440301848429881 26 0.106306233987548 1.05217543318226 914 0.289654537227555 4 2 2 -7.24981326382069 LTS-025 chr10 89463572 89468726 5155 * PAPSS2 0 1 NA 1.15769617989862 7 0.416845237925243 4 4 0 -5.76448532661645 LTS-025 chr10 89468727 91163798 1695072 * c(KLLN, FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, LIPJ, CFL1P1, LIPM, IFIT2, IFIT1, IFIT3, FAS, LIPA, IFIT1B, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, ATAD1, LIPF, CH25H, PAPSS2) 0.363326701003487 19 0.194756993583562 1.00995728622442 1437 0.286796823466349 3 2 1 -6.81134397271508 LTS-025 chr10 91163799 91172585 8787 * c(IFIT1, LIPA) NA 0 NA 0.425 1 NA NA NA NA NA LTS-025 chr10 91172586 91203637 31052 * c(IFIT5, SLC16A12, LIPA) 0 2 0 0.713020593521438 181 0.262364954885122 0 0 0 -Inf LTS-025 chr10 91203638 91222076 18439 * SLC16A12 NA 0 NA 0.995 1 NA NA NA NA NA LTS-025 chr10 91222077 91373624 151548 * c(SLC16A12, MIR107, PANK1) 0.45529781207362 3 0.03278719262151 1.07166067149445 79 0.285632898224056 4 2 2 -9.38734819892735 LTS-025 chr10 91373625 91486222 112598 * c(FLJ37201, PANK1, KIF20B) 0 1 NA 1.13860021128654 87 0.26906227808714 4 4 0 -5.7706224099429 LTS-025 chr10 91486223 93624099 2137877 * c(HECTD2-AS1, LINC00502, RPP30, NUDT9P1, HECTD2, ANKRD1, HTR7, PPP1R3C, LINC00865, TNKS2, PCGF5, KIF20B) 0.0681571019316838 10 0.183952167695844 1.0876434379073 945 0.352294017796696 4 4 0 -6.92474472257113 LTS-025 chr10 93624100 93668140 44041 * c(FGFBP3, TNKS2) 0.469 1 NA 1.1607738712508 57 0.230264827920904 4 4 0 -5.76634660882976 LTS-025 chr10 93668141 94661093 992953 * c(MARK2P9, FGFBP3, CPEB3, HHEX, IDE, KIF11, EXOC6, MARCH5, BTAF1) 0.390708517069773 15 0.165317443552872 1.06088397274457 955 0.410866379564571 4 2 2 -6.82471564665271 LTS-025 chr10 94661094 94834112 173019 * c(CYP26A1, CYP26C1, EXOC6) 0 1 NA 1.11729146941262 161 0.779360302563057 4 4 0 -5.76613671981447 LTS-025 chr10 94834113 95185932 351820 * c(CYP26A1, MYOF) 0.230023464861454 9 0.249783962210903 1.05258811112491 330 0.406319005506728 4 3 1 -6.77675672525815 LTS-025 chr10 95185933 95216590 30658 * MYOF 0.409 1 NA 1.14780101882242 15 0.44535231639039 4 4 0 -5.76491225508734 LTS-025 chr10 95216591 96076495 859905 * c(PLCE1-AS1, FRA10AC1, SLC35G1, MYOF, PIPSL, FFAR4, PLCE1, PDE6C, CEP55, RBP4, LGI1) 0.339332499931916 26 0.201663592686892 1.05311040157044 853 0.431063348081169 3 2 1 -6.76915551982484 LTS-025 chr10 96076496 96294785 218290 * c(TBC1D12, PLCE1, NOC3L) 0 1 NA 1.01726840794195 267 0.252535348125535 3 3 0 -5.77681078101191 LTS-025 chr10 96294786 96985009 690224 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, TBC1D12, HELLS) 0.297883234408521 9 0.250492015840825 1.04893346271804 417 0.381300037873833 3 2 1 -6.77628249449321 LTS-025 chr10 96985010 96997440 12431 * c(ACSM6, PDLIM1) 0.469 1 NA 0.875346193573751 12 0.141838229449374 3 3 0 -5.76635648338585 LTS-025 chr10 96997441 97365820 368380 * c(SORBS1, ALDH18A1, PDLIM1) 0.441611762879073 12 0.0518465100663546 0.971189693467971 361 0.251713785068917 4 2 2 -7.93503556194564 LTS-025 chr10 97365821 97365876 56 * ALDH18A1 NA 0 NA 1.301 1 NA NA NA NA NA LTS-025 chr10 97365877 97402998 37122 * ALDH18A1 0.375444037529965 4 0.0392470805708314 1.37364322855692 97 0.31548473687491 4 2 2 -6.75472382788932 LTS-025 chr10 97402999 97412994 9996 * ALDH18A1 NA 0 NA 0.867 1 NA NA NA NA NA LTS-025 chr10 97412995 97440394 27400 * c(TCTN3, ALDH18A1) 0.479 1 NA 0.946924595071749 27 0.153133044587801 3 3 0 -5.76443647119892 LTS-025 chr10 97440395 97440427 33 * TCTN3 0 1 NA 1.45319046684626 2 0.371938166904124 5 5 0 -5.76441050055479 LTS-025 chr10 97440428 97987378 546951 * c(C10orf131, MIR3157, TCTN3, BLNK, CC2D2B, CCNJ, ENTPD1-AS1, ENTPD1, ZNF518A) 0.330592208793191 14 0.217399225106538 0.998396684521641 620 0.290769921610825 3 2 1 -6.74654088033808 LTS-025 chr10 97987379 98078345 90967 * c(DNTT, BLNK) 0 1 NA 1.07209694103705 39 0.778766665676023 3 3 0 -5.7659372465298 LTS-025 chr10 98078346 98173147 94802 * c(DNTT, TLL2, OPALIN) 0.0655474912160369 9 0.159333333333333 1.07732036426386 304 0.420171967769824 3 3 0 -6.7602137321154 LTS-025 chr10 98173148 98278115 104968 * c(TM9SF3, TLL2) 0.472 1 NA 1.04139858323777 53 0.258366317166448 3 3 0 -5.77406283558482 LTS-025 chr10 98278116 98354373 76258 * c(PIK3AP1, TM9SF3) 0.428633281294463 14 0.127799228703239 0.974073863997507 190 0.23438343938579 4 2 2 -6.91006066185553 LTS-025 chr10 98354374 98354422 49 * PIK3AP1 0 1 NA 2.999 1 NA NA NA NA NA LTS-025 chr10 98354423 98984506 630084 * c(SLIT1-AS1, ARHGAP19-SLIT1, PIK3AP1, C10orf12, SLIT1, LCOR, ARHGAP19) 0.185671217460796 15 0.239460962123166 1.06000999801385 772 0.44838853487996 4 3 1 -6.84038010461322 LTS-025 chr10 98984507 98995076 10570 * c(ARHGAP19-SLIT1, ARHGAP19) 0.468 1 NA 0.906376272438127 39 0.146731354585016 3 3 0 -5.76482730078649 LTS-025 chr10 98995077 99205731 210655 * c(FRAT1, ARHGAP19-SLIT1, RRP12, FRAT2, EXOSC1, PGAM1, ARHGAP19) 0.339906248207798 17 0.219595065170096 0.978265830921894 405 0.318119268132057 3 2 1 -6.73608121828767 LTS-025 chr10 99205732 99343585 137854 * c(ANKRD2, EXOSC1, MMS19, UBTD1, ZDHHC16) 0 1 NA 0.98767354527646 309 0.278147787129236 3 3 0 -5.76689925900669 LTS-025 chr10 99343586 99661246 317661 * c(MIR5692C2, HOGA1, MORN4, ZFYVE27, ANKRD2, GOLGA7B, C10orf62, CRTAC1, PI4K2A, AVPI1, SFRP5, MARVELD1) 0.132057262059559 14 0.217118352796071 1.05931858227083 591 0.539441037804293 3 3 0 -6.85863242773218 LTS-025 chr10 99661247 100004441 343195 * c(R3HCC1L, CRTAC1) 0.485 1 NA 1.13431112407368 128 0.292656107709081 4 4 0 -5.78189627607056 LTS-025 chr10 100004442 101635352 1630911 * c(MIR1287, MIR4685, ABCC2, COX15, NKX2-3, DNMBP, CNNM1, R3HCC1L, GOT1, HPS1, CUTC, ENTPD7, HPSE2, SLC25A28, LOXL4, PYROXD2) 0.314918962660471 22 0.220886133522872 1.07860925477136 1136 0.296664439075197 3 2 1 -6.93574761330085 LTS-025 chr10 101635353 101635461 109 * DNMBP 0.486 1 NA 1.0525138298357 3 0.258341505247092 3 3 0 -5.76442228057005 LTS-025 chr10 101635462 101715899 80438 * c(DNMBP-AS1, DNMBP) 0.459706884727589 10 0.0260861819530741 1.04773139489904 170 0.249496823246916 4 2 2 -10.468640554653 LTS-025 chr10 101715900 101835750 119851 * c(DNMBP-AS1, CPN1, DNMBP) 0 1 NA 0.998689441108387 77 0.30993496936586 3 3 0 -5.76704617406293 LTS-025 chr10 101835751 102246512 410762 * c(ERLIN1, CHUK, CPN1, SEC31B, BLOC1S2, CWF19L1, SCD, SNORA12, WNT8B, OLMALINC, PKD2L1) 0.319666721712097 17 0.216052876833972 0.975102610910991 709 0.308628505871563 3 2 1 -6.73769420973628 LTS-025 chr10 102246513 102247785 1273 * SEC31B 0 1 NA 0.932135738917366 23 0.459597177120782 3 3 0 -5.76441046845546 LTS-025 chr10 102247786 102539322 291537 * c(SEC31B, NDUFB8, PAX2, HIF1AN) 0.0410893880500677 9 0.160666666666667 1.09483583223907 307 0.678055263599656 3 3 0 -6.74245706930327 LTS-025 chr10 102539323 102568983 29661 * PAX2 0.483 1 NA 0.960444311092688 21 0.663787760113269 3 3 0 -5.76442678800581 LTS-025 chr10 102568984 102890094 321111 * c(TLX1NB, PAX2, SLF2, C10orf2, SEMA4G, MIR608, PDZD7, KAZALD1, SFXN3, LZTS2, MRPL43) 0.313576368991515 11 0.218673396976986 1.02906610452131 925 0.358764681228541 3 2 1 -6.74839486433788 LTS-025 chr10 102890095 102890700 606 * TLX1NB 0 1 NA 1.25491167478547 13 0.570721304747166 4 4 0 -5.76441040700782 LTS-025 chr10 102890701 105811317 2920617 * c(TLX1NB, MIR936, KCNIP2-AS1, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, ACTR1A, NPM3, LBX1, MGEA5, SFXN2, BORCS7, CALHM3, COL17A1, CYP17A1, FGF8, NT5C2, PDCD11, PPRC1, CALHM1, DPCD, POLL, KCNIP2, TLX1, LBX1-AS1, ARL3, NFKB2, CALHM2, SUFU, PITX3, CNNM2, WBP1L, PSD, AS3MT, MIR146B, FBXW4, TAF5, RPEL1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, OBFC1, TRIM8, ELOVL3, NA NA NA NA NA NA NA NA NA LTS-025 PCGF6, USMG5, GBF1, LDB1, BTRC, INA, NEURL1, NOLC1, SH3PXD2A, SLK) 0.0215511902561239 21 0.0990709221671405 1.0132694410011 4338 0.314800187264251 3 3 0 -6.83976380071721 LTS-025 NA NA NA NA LTS-025 chr10 105811318 105814826 3509 * COL17A1 0.454 1 NA 0.900714905122689 21 0.104301714362937 3 3 0 -5.76478300558574 LTS-025 chr10 105814827 106116606 301780 * c(MIR4482, GSTO2, SFR1, COL17A1, CFAP58, MIR609, CFAP43, ITPRIP, GSTO1) 0.38821852231073 17 0.155131301123388 0.992982250345447 551 0.300201531758286 3 2 1 -6.82169389668322 LTS-025 chr10 106116607 106214783 98177 * CFAP58 0 1 NA 0.981016917416469 104 0.3042861488789 3 3 0 -5.76550559869697 LTS-025 chr10 106214784 111624607 5409824 * c(SORCS1, CFAP58, SORCS3, XPNPEP1) 0.190727826533827 15 0.236971306279895 1.08319304924483 386 0.773834938348892 4 3 1 -6.88221864936436 LTS-025 chr10 111624608 111637635 13028 * XPNPEP1 0.493 1 NA 0.946056886085098 41 0.119872132077395 3 3 0 -5.76442491366517 LTS-025 chr10 111637636 114205389 2567754 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, GUCY2GP, MXI1, ACSL5, GPAM, ZDHHC6, RPL13AP6, TECTB, XPNPEP1, SHOC2, SMC3, BBIP1) 0.409452361944702 26 0.15450952671649 1.00907709668481 1534 0.295535253453475 3 2 1 -6.97153308161943 LTS-025 chr10 114205390 114220280 14891 * c(VTI1A, ZDHHC6) 0 1 NA 1.36189967093627 11 0.374802420677154 4 4 0 -5.76501400756891 LTS-025 chr10 114220281 115393009 1172729 * c(MIR4295, VTI1A, HABP2, NRAP, TCF7L2) 0.0939739573867537 12 0.209428877057235 1.08867332747871 522 0.582735605576722 3 3 0 -6.82311370760142 LTS-025 chr10 115393010 115451781 58772 * c(NRAP, CASP7) 0.371 1 NA 0.983821714934515 89 0.355732056420659 3 3 0 -5.76495828965249 LTS-025 chr10 115451782 115543045 91264 * c(MIR4483, PLEKHS1, CASP7) 0.452068709996112 17 0.0352140513398374 0.994738533871932 195 0.321135660755763 4 2 2 -9.02432592639185 LTS-025 chr10 115543046 115594922 51877 * DCLRE1A 0 1 NA 1.21414785854657 11 0.989734114892388 4 4 0 -5.76441974346438 LTS-025 chr10 115594923 116736985 1142063 * c(MIR2110, TRUB1, ADRB1, VWA2, NHLRC2, ABLIM1, CCDC186, TDRD1, FAM160B1, AFAP1L2, DCLRE1A) 0.360121091825453 33 0.191232669050351 1.03059302845972 1460 0.342454874713635 3 2 1 -6.795514587943 LTS-025 chr10 116736986 116853758 116773 * c(TRUB1, ATRNL1) 0 1 NA 0.954232477562269 23 0.337989089329713 3 3 0 -5.76452722198117 LTS-025 chr10 116853759 116856484 2726 * ATRNL1 NA 0 NA 0.874210324016435 7 0.0842504768956405 3 NA NA -5.7656633707438 LTS-025 chr10 116856485 116881451 24967 * ATRNL1 NA 0 NA 1.354 1 NA NA NA NA NA LTS-025 chr10 116881452 118355659 1474208 * c(PNLIPRP3, ATRNL1, GFRA1, CCDC172, PNLIP, PNLIPRP1) 0.0556514543495495 12 0.18100552477756 1.12566165741733 522 0.519950913973574 4 4 0 -6.77518884757578 LTS-025 chr10 118355660 118355695 36 * PNLIPRP1 0.431 1 NA 3.019 1 NA NA NA NA NA LTS-025 chr10 118355696 119305334 949639 * c(MIR3663, VAX1, PDZD8, C10orf82, EMX2OS, EMX2, HSPA12A, KCNK18, ENO4, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.187725088751894 18 0.231757366925375 1.14001213053641 977 0.518870003185171 4 3 1 -6.81101930681485 LTS-025 chr10 119305335 119307573 2239 * EMX2 NA 0 NA 0.896 1 NA NA NA NA NA LTS-025 chr10 119307574 121565015 2257442 * c(MIR4681, PRDX3, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, EIF3A, BAG3) 0.260364514391529 8 0.230699402439006 0.977045540563921 1285 0.528284319760733 3 2 1 -6.79424265938054 LTS-025 chr10 121565016 121579138 14123 * INPP5F NA 0 NA 1.06945718504645 41 0.190530523769303 3 NA NA -5.76822092205461 LTS-025 chr10 121579139 121580246 1108 * INPP5F NA 0 NA 2.004 1 NA NA NA NA NA LTS-025 chr10 121580247 121591626 11380 * c(INPP5F, MCMBP) 0 1 NA 1.44332358534955 115 0.51485841766107 5 5 0 -5.7644972512439 LTS-025 chr10 121591627 124013823 2422197 * c(MIR4682, TACC2, ATE1, SEC23IP, PLPP4, FGFR2, WDR11-AS1, NSMCE4A, WDR11, MCMBP) 0.0846379439738561 23 0.169639713543342 1.53548727599397 1099 0.717902070122796 5 5 0 -6.81019335650901 LTS-025 chr10 124013824 124034528 20705 * c(TACC2, BTBD16) 0.338 1 NA 1.68119605386015 5 0.47155731358977 6 6 0 -5.76478172887361 LTS-025 chr10 124034529 124216410 181882 * c(MIR3941, BTBD16, ARMS2, PLEKHA1) 0.332300819829074 14 0.0475882638593052 1.50945585236667 210 0.385776068767282 6 4 2 -6.76720099009121 LTS-025 chr10 124216411 124273756 57346 * c(ARMS2, HTRA1) 0 1 NA 1.46414294418477 51 0.449025801258768 5 5 0 -5.76473805061271 LTS-025 chr10 124273757 124596498 322742 * c(FAM24B-CUZD1, DMBT1, DMBT1P1, C10orf120, CUZD1, HTRA1) 0.100843016473796 9 0.162573402225306 1.56548562629816 257 1.01174121321944 8 7 1 -6.80210679811331 LTS-025 chr10 124596499 124697198 100700 * c(FAM24B-CUZD1, FAM24A, FAM24B, LOC399815, CUZD1, C10orf88) 0.316 1 NA 1.48659627312269 119 0.384968125469004 5 5 0 -5.7647440063449 LTS-025 chr10 124697199 124898528 201330 * c(PSTK, HMX3, ACADSB, IKZF5, C10orf88) 0.273843900656118 9 0.114914944391252 1.44761547132392 355 0.537304620290277 4 3 1 -6.74789611017791 LTS-025 chr10 124898529 124907964 9436 * HMX2 0 1 NA 1.52603212181864 41 0.615883591907178 5 5 0 -5.76441022322059 LTS-025 chr10 124907965 126205854 1297890 * c(CPXM2, GPR26, HMX2, NKX1-2, OAT, CHST15, LHPP, BUB3) 0.171614222139281 19 0.177101219942899 1.51219257441953 631 0.555330754944851 5 4 1 -6.77140390750352 LTS-025 chr10 126205855 126302597 96743 * LHPP 0.288 1 NA 1.83455200136602 21 0.392911737332105 6 6 0 -5.76442249833099 LTS-025 chr10 126302598 126691660 389063 * c(CTBP2, FAM175B, METTL10, ZRANB1, LHPP, FAM53B) 0.346995738163972 9 0.109811328094044 1.46086064012948 463 0.369503521641278 5 3 2 -6.74514277235266 LTS-025 chr10 126691661 126694602 2942 * CTBP2 0 1 NA 1.55492686292105 19 0.651190403430877 5 5 0 -5.76441124318061 LTS-025 chr10 126694603 127477478 782876 * c(TEX36-AS1, MIR4296, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, UROS) 0.182631922313497 11 0.172634558849296 1.54410541154352 335 0.626137903841371 5 4 1 -6.75593259851155 LTS-025 chr10 127477479 127483573 6095 * UROS 0.369 1 NA 1.39670773900299 11 0.215793883138517 5 5 0 -5.76506012704003 LTS-025 chr10 127483574 128830409 1346836 * c(MIR4484, LINC00601, FANK1-AS1, C10orf90, DOCK1, DHX32, BCCIP, UROS, ADAM12, FANK1) 0.308424592021818 28 0.0820821307622809 1.52248059988603 791 0.471077858812145 6 4 2 -6.87959131038469 LTS-025 chr10 128830410 129152868 322459 * c(DOCK1, FAM196A) 0 1 NA 1.53855355428033 155 0.442172681408895 5 5 0 -5.76444268862041 LTS-025 chr10 129152869 129881675 728807 * c(CLRN3, DOCK1, FOXI2, PTPRE, NPS) 0.178841832847386 11 0.174969036221737 1.50113539436826 379 0.569743153600038 5 4 1 -6.76095327280582 LTS-025 chr10 129881676 129896232 14557 * c(MKI67, PTPRE) 0.276 1 NA 1.47662318148018 85 0.443370354070214 5 5 0 -5.76446565034527 LTS-025 chr10 129896233 129906980 10748 * MKI67 0.36077059966715 12 0.0327510120130476 1.37801731878451 164 0.463021145940021 5 3 2 -6.7336377405887 LTS-025 chr10 129906981 131334702 1427722 * c(MGMT, MKI67) 0 1 NA 1.41294626469025 101 0.414674481185586 5 5 0 -5.79567697145267 LTS-025 chr10 131334703 134459388 3124686 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, PPP2R2D, BNIP3, LRRC27) 0.2408716304176 35 0.167978389966681 1.56211663544827 1076 0.611358709063035 5 4 1 -6.74798898779279 LTS-025 chr10 134459389 134503864 44476 * INPP5A 0 1 NA 1.38855987631274 11 0.527035499925592 5 5 0 -5.76531094035165 LTS-025 chr10 134503865 134693137 189273 * c(INPP5A, CFAP46, NKX6-2) 0.117371552688138 13 0.166172330999308 1.66381615423513 250 0.860751289435607 8 7 1 -6.76483170272414 LTS-025 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.798 1 NA NA NA NA NA LTS-025 chr10 134694406 134756359 61954 * CFAP46 0.0666360135100951 4 0.177 0.818192972943568 167 1.02656573971161 2 2 0 -6.74045886544604 LTS-025 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.044 1 NA NA NA NA NA LTS-025 chr10 134884462 134916182 31721 * ADGRA1 0 1 NA 1.57304648445711 79 0.544800397300158 5 5 0 -5.76446007315268 LTS-025 chr10 134916183 134940862 24680 * ADGRA1 0.348 1 NA 1.41323587513339 7 0.0970184076790143 5 5 0 -5.77426797626383 LTS-025 chr10 134940863 135061112 120250 * c(VENTX, MIR202, UTF1, ADGRA1, KNDC1) 0.224922595512259 20 0.168342218803184 1.52709345496041 369 0.898767860530876 5 4 1 -6.73458644398453 LTS-025 chr10 135061113 135084296 23184 * c(ADAM8, MIR202) 0 1 NA 1.51681960696395 57 0.597939642786829 5 5 0 -5.76441293978553 LTS-025 chr10 135084297 135372872 288576 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, FUOM, SPRN, CALY, SCART1, MTG1, SYCE1) 0.116130641289554 17 0.150857499959789 1.47479115541423 841 0.646846747862255 7 6 1 -6.83324681935094 LTS-025 chr10 135372873 135473026 100154 * c(CYP2E1, SPRNP1, FRG2B, SYCE1) 0.246911394158376 8 0.123059146638633 1.25783044883081 64 1.65356021621254 4 3 1 -6.74462198418181 LTS-025 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.158 1 NA NA NA NA NA LTS-025 chr11 193025 193096 72 * SCGB1C1 0.038 1 NA 0.924 1 NA NA NA NA NA LTS-025 chr11 193097 372700 179604 * c(IFITM3, IFITM2, ODF3, SCGB1C1, NLRP6, SIRT3, B4GALNT4, IFITM5, BET1L, PSMD13, RIC8A, PGGHG, IFITM1) 0.124792147645724 48 0.108501364504281 0.573705287437691 655 0.216359401377042 2 2 0 -7.0403528341564 LTS-025 chr11 372701 372896 196 * B4GALNT4 0 1 NA 0.754704386235943 7 0.998367834684859 2 2 0 -5.76441292725113 LTS-025 chr11 372897 1009321 636425 * c(MIR210HG, DEAF1, PKP3, LRRC56, LOC143666, AP2A2, LOC171391, DRD4, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, MIR210, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PHRF1, SIGIRR, RNH1, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, RASSF7, PTDSS2, CD151) 0.0705984853441692 80 0.0704202529483987 0.606650073680389 2244 0.244372296720958 2 2 0 -6.81154669065284 LTS-025 chr11 1009322 1016869 7548 * c(AP2A2, MUC6) 0.347 1 NA 0.602175868340772 88 0.133443172658453 2 2 0 -5.765711122607 LTS-025 chr11 1016870 1018483 1614 * MUC6 0.287250858470944 25 0.109358736886146 0.531183658227923 62 0.120416803248114 4 3 1 -6.80714608431914 LTS-025 chr11 1018484 1018496 13 * MUC6 0.136 1 NA 0.583 1 NA NA NA NA NA LTS-025 chr11 1018497 1020204 1708 * MUC6 NA 0 NA 0.47829336669347 19 0.143552301123649 2 NA NA -5.7689354425162 LTS-025 chr11 1020205 1020553 349 * MUC6 NA 0 NA 0.741 1 NA NA NA NA NA LTS-025 chr11 1020554 1101005 80452 * c(MUC2, MUC6) 0.0579719925725574 15 0.119437849947159 0.669320623865391 343 0.317318646372302 2 2 0 -6.73645921647979 LTS-025 chr11 1101006 1213023 112018 * c(MUC2, MUC5B) 0.262 1 NA 0.681004148878639 109 0.128804085822751 2 2 0 -5.77512891976211 LTS-025 chr11 1213024 1213556 533 * MUC5B 0.395197161844623 17 0.0664804814345136 0.762218365564166 29 0.372273143140152 2 1 1 -6.82891509345203 LTS-025 chr11 1213557 1221699 8143 * MUC5B 0 1 NA 0.651211919857585 85 0.168086019061436 2 2 0 -5.76441801468039 LTS-025 chr11 1221700 1258295 36596 * MUC5B 0.269738673282946 10 0.108281782606514 0.678234268555919 132 0.284062740782564 4 3 1 -6.83099604935522 LTS-025 chr11 1258296 1261047 2752 * MUC5B 0 1 NA 0.660012762934023 21 0.388029975523492 2 2 0 -5.76441459666956 LTS-025 chr11 1261048 1771854 510807 * c(FAM99B, DUSP8, TOLLIP-AS1, KRTAP5-AS1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, KRTAP5-5, KRTAP5-2, KRTAP5-6, TOLLIP, MUC5B, MOB2, BRSK2) 0.0101333298550136 16 0.0515049754878109 0.6611478937876 727 0.440044068154792 3 3 0 -7.06594719795959 LTS-025 chr11 1771855 1773959 2105 * MOB2 NA 0 NA 1.221 1 NA NA NA NA NA LTS-025 chr11 1773960 4510285 2736326 * c(MIR675, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, IGF2, INS, KCNQ1, MRGPRG, OR52K1, RHOG, LSP1, ART1, ASCL2, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, NA NA NA NA NA NA NA NA NA LTS-025 PHLDA2, ZNF195, MOB2, CARS, SYT8, CD81) 0.0301096127954682 64 0.0408240392727089 1.04552563875918 2794 0.429990803901065 3 3 0 -6.84002433177435 LTS-025 NA NA NA NA LTS-025 chr11 4510286 4510357 72 * OR52K1 NA 0 NA 1.252 1 NA NA NA NA NA LTS-025 chr11 4510358 4968142 457785 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, OR51G1, OR51G2, OR51E2) 0.0294870289870367 32 0.0402540195348201 1.17779504318189 660 0.937561421002341 4 4 0 -6.73454804052878 LTS-025 chr11 4968143 4976941 8799 * c(OR51A4, OR51A2) NA 0 NA 0.203430700688012 40 0.284334468089238 1 NA NA -5.78408194356753 LTS-025 chr11 4976942 5618234 641293 * c(TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR51A2, TRIM6-TRIM34, UBQLN3, MMP26, OR51B4, OR51B2) 0.0405326943394887 32 0.0794206593339054 1.14603099840078 819 0.878378822744358 4 4 0 -6.75071685854698 LTS-025 chr11 5618235 5633437 15203 * c(TRIM6, HBG2, TRIM6-TRIM34) 0.0130277563773199 2 0.0424264068711929 1.65714140381707 69 0.767174914560634 9 9 0 -6.73812153772909 LTS-025 chr11 5633438 5777005 143568 * c(TRIM22, TRIM6, HBG2, OR56B1, OR52N4, TRIM6-TRIM34, TRIM34, TRIM5) 0.0251861337031391 9 0.0314541111956945 1.10672859219255 309 0.41799409360328 4 4 0 -6.74383311007655 LTS-025 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 2.002 1 NA NA NA NA NA LTS-025 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 1.76215775595883 47 0.641641880976263 6 NA NA -5.76442956480535 LTS-025 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 1.068 1 NA NA NA NA NA LTS-025 chr11 5817708 17397188 11579481 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, NA NA NA NA NA NA NA NA NA LTS-025 LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.0375300675403945 213 0.0459622245691139 1.050360166321 10117 0.543033802464767 3 3 0 -7.00562003761317 LTS-025 NA NA NA NA LTS-025 chr11 17397189 17803938 406750 * c(USH1C, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8) 0.00808187918381345 31 0.0208172281835818 1.15888285254662 1049 0.820463585547772 7 7 0 -6.99725047854969 LTS-025 chr11 17803939 18266792 462854 * c(SAA2-SAA4, SAAL1, MRGPRX3, MRGPRX4, SERGEF, KCNC1, LOC494141, SAA2, SAA3P, SAA4, TPH1) 0.036751082253101 15 0.036343336325083 0.998434705378633 479 0.442825766879645 3 3 0 -6.73871796863062 LTS-025 chr11 18266793 18267112 320 * c(SAA2-SAA4, SAA2) 0.078 1 NA 1.53415286663567 7 0.79786482922503 5 5 0 -5.76441013713022 LTS-025 chr11 18267113 18388128 121016 * c(SAA2-SAA4, HPS5, GTF2H1, SAA1, SAA2) 0.282648213191006 9 0.206168889775133 0.963190800617425 313 0.285595925828791 3 2 1 -6.76519971053566 LTS-025 chr11 18388129 18388485 357 * GTF2H1 0.046 1 NA 0.944556693814818 9 0.190327203637432 3 3 0 -5.76441021215665 LTS-025 chr11 18388486 18720551 332066 * c(SPTY2D1-AS1, SPTY2D1, TMEM86A, LDHAL6A, GTF2H1, LDHA, LDHC, UEVLD, TSG101) 0.040928823233845 11 0.0387955011449899 0.948603931128321 474 0.384320965858423 3 3 0 -6.74497182073786 LTS-025 chr11 18720552 18722483 1932 * TMEM86A NA 0 NA 1.351 1 NA NA NA NA NA LTS-025 chr11 18722484 22401029 3678546 * c(LOC100126784, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, MRGPRX2, DBX1, TMEM86A, ANO5, MRGPRX1, IGSF22, NAV2-AS4, NELL1, ZDHHC13, SLC17A6, E2F8, CSRP3, PTPN5, NAV2, SLC6A5) 0.0310803818378842 51 0.0383639638917852 1.11468893273086 1779 0.482555453803741 4 4 0 -6.83550097557615 LTS-025 chr11 22401030 22644108 243079 * c(FANCF, SLC17A6) NA 0 NA 1.955 1 NA NA NA NA NA LTS-025 chr11 22644109 25100877 2456769 * c(CCDC179, FANCF, SVIP, GAS2, LUZP2) 0.143124452999404 6 0.170539926898855 1.56661962682154 310 0.502206484396646 5 4 1 -6.84496175189076 LTS-025 chr11 25100878 26353951 1253074 * c(LUZP2, ANO3) 0.407 1 NA 1.58178127236183 85 0.394834879503862 5 5 0 -5.76979973506007 LTS-025 chr11 26353952 27406844 1052893 * c(MUC15, SLC5A12, FIBIN, LGR4, ANO3, BBOX1, CCDC34) 0.327589978002397 20 0.0937334406427975 1.65238636997044 760 0.462609956725509 6 4 2 -6.76177603813443 LTS-025 chr11 27406845 27517247 110403 * c(LIN7C, LGR4) 0 1 NA 1.54435963024322 47 0.357822266332143 5 5 0 -5.76445684844858 LTS-025 chr11 27517248 30359558 2842311 * c(LINC00678, ARL14EP, METTL15, FSHB, KCNA4, BDNF-AS, LIN7C, BDNF, MIR610, KIF18A) 0.215259769188158 16 0.188532744724447 1.56078867849527 671 0.537677551351216 5 4 1 -6.73542825947538 LTS-025 chr11 30359559 30915951 556393 * c(DCDC5, MPPED2) 0 1 NA 1.64701039514658 177 0.488695825684125 5 5 0 -5.77202495642687 LTS-025 chr11 30915952 30947064 31113 * DCDC5 0 3 0 1.61205024060833 71 0.475441378750069 0 0 0 -Inf LTS-025 chr11 30947065 31827676 880612 * c(DCDC5, DNAJC24, IMMP1L, ELP4, DCDC1, PAX6) 0 7 0 1.49097716297491 549 0.57671359852857 0 0 0 -Inf LTS-025 chr11 31827677 32112568 284892 * c(DKFZp686K1684, PAX6, RCN1) 0.348 1 NA 1.30207248465326 19 0.661243136357662 4 4 0 -5.7654884862936 LTS-025 chr11 32112569 32998176 885608 * c(EIF3M, CCDC73, WT1-AS, RCN1, WT1, PRRG4, QSER1) 0.172446780264578 11 0.190365676814627 1.49961909904444 715 0.548276205652469 5 4 1 -6.76547008285611 LTS-025 chr11 32998177 33055078 56902 * c(QSER1, DEPDC7) 0.353 1 NA 1.53887596749763 135 0.358061514089063 5 5 0 -5.76441954674439 LTS-025 chr11 33055079 35829003 2773925 * c(C11orf91, MIR1343, HIPK3, CSTF3, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, APIP, TRIM44, NAT10, TCP11L1, SLC1A2, PDHX, CAT, DEPDC7, CD44, CD59) 0.327215331222793 77 0.100329803039727 1.44042592629524 2567 0.601383384615795 5 3 2 -6.81327844301472 LTS-025 chr11 35829004 35829478 475 * TRIM44 0.282 1 NA 2.00661209680968 13 1.08897707234935 7 7 0 -5.76441083914483 LTS-025 chr11 35829479 40137910 4308432 * c(MIR3973, C11orf74, LDLRAD3, COMMD9, TRIM44, LRRC4C, RAG1, RAG2, TRAF6, PRR5L) 0.215006156293095 15 0.170728634583267 1.52065827857708 672 0.591381484647844 5 4 1 -6.73332963504693 LTS-025 chr11 42209164 45889122 3679959 * c(MIR670, LOC100507205, ALKBH3-AS1, LOC100507384, CRY2, EXT2, ALKBH3, LOC221122, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, MIR129-2, HSD17B12, SLC35C1, TTC17, PRDM11, SYT13, ALX4, SEC14L1P1, ACCS, CHST1, API5, TSPAN18, TP53I11) 0.253751763588087 46 0.231289525150718 1.0829619632283 1646 0.467090550526088 4 3 1 -6.90488696974128 LTS-025 chr11 45889123 45891620 2498 * CRY2 0 1 NA 1.06213273110413 15 0.413253928624774 3 3 0 -5.76453845478308 LTS-025 chr11 45891621 46700076 808456 * c(MIR3160-2, MIR3160-1, MIR4688, CHRM4, LARGE2, CRY2, C11orf94, HARBI1, ARHGAP1, MDK, PHF21A, AMBRA1, DGKZ, CREB3L1, PEX16, MAPK8IP1, ATG13) 0.0437351150601599 10 0.130285839598937 1.05315739865955 1082 0.35917367645166 3 3 0 -6.78262363695078 LTS-025 chr11 46700077 46744925 44849 * c(F2, ARHGAP1, ZNF408) 0.491 1 NA 1.04648732856123 157 0.223347956088281 3 3 0 -5.77047688814034 LTS-025 chr11 46744926 47298360 553435 * c(LRP4-AS1, NR1H3, MIR5582, DDB2, F2, PACSIN3, LRP4, ACP2, SNORD67, C11orf49, ARFGAP2, MADD, CKAP5) 0.397132327464158 27 0.150142932850335 1.02109039691284 1054 0.319641705976032 4 2 2 -6.87065686138746 LTS-025 chr11 47298361 47299735 1375 * MADD 0 1 NA 0.884885923405393 3 1.40061141410933 3 3 0 -5.76441173092723 LTS-025 chr11 47299736 47369943 70208 * c(MYBPC3, MADD) 0.125240195333471 16 0.227715904875644 1.10236866281264 328 0.770455479616494 7 6 1 -6.77574490389673 LTS-025 chr11 47369944 47370041 98 * MYBPC3 0.414 1 NA 1.30263068686145 3 0.981662365581976 4 4 0 -5.76441030400278 LTS-025 chr11 47370042 47447813 77772 * c(MYBPC3, PSMC3, SPI1, SLC39A13) 0.443445274349265 4 0.0363994047570378 1.10499082264777 239 0.328137470162916 4 2 2 -8.58361489398868 LTS-025 chr11 47447814 48346419 898606 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.281091838415225 27 0.211487770150136 0.969541427911278 1203 0.363251502112589 3 2 1 -6.76876160654583 LTS-025 chr11 48346420 48346423 4 * character(0) 0.365 1 NA 2.521 1 NA NA NA NA NA LTS-025 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.304098181650964 102 0.0968764436331335 1.66601007795357 189 1.17094274615843 10 7 3 -6.74021874109398 LTS-025 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.919 1 NA NA NA NA NA LTS-025 chr11 48388749 51516191 3127443 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.0872826686373118 5 0.188276923705482 1.08470238848154 448 0.615841295167783 4 4 0 -6.87453898525757 LTS-025 chr11 51516192 51527703 11512 * OR4C46 NA 0 NA 0.861016559138087 9 0.182934718167742 3 NA NA -5.76604357906789 LTS-025 chr11 55035776 55340582 304807 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) NA 0 NA 1.0313943117678 91 0.208526125007743 3 NA NA -5.79947584055076 LTS-025 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.095 1 NA NA NA NA NA LTS-025 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.0876564256236084 67 0.0211083226355544 0 NA NA -10.3823364916977 LTS-025 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.148 1 NA NA NA NA NA LTS-025 chr11 55432533 55433658 1126 * OR4C6 0.467 1 NA 1.09994807400708 23 0.355948596235545 4 4 0 -5.76448203100828 LTS-025 chr11 55433659 57080774 1647116 * c(OR5I1, OR8I2, APLNR, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51, TNKS1BP1) 0.256786602502434 53 0.170787727165516 1.17325513761657 1222 0.547892513151971 4 3 1 -6.74287797336565 LTS-025 chr11 57080775 57137424 56650 * c(P2RX3, SSRP1, TNKS1BP1) 0.482253291704849 4 0.0239095517872391 1.03711295622823 198 0.254633245531264 4 2 2 -11.8816341977865 LTS-025 chr11 57137425 57145254 7830 * c(PRG3, P2RX3) 0 1 NA 1.03257749464493 25 0.93975791740923 3 3 0 -5.76445586437561 LTS-025 chr11 57145255 57313734 168480 * c(PRG3, SMTNL1, TIMM10, SLC43A3, RTN4RL2, PRG2, SLC43A1) 0.097754927565325 12 0.17905628030078 1.04737607383204 352 0.4321885446179 3 3 0 -6.81095084117656 LTS-025 chr11 57313735 57319339 5605 * c(SMTNL1, UBE2L6) 0.496 1 NA 1.05746802929609 25 0.327013750985082 3 3 0 -5.76483716104114 LTS-025 chr11 57319340 57468129 148790 * c(CLP1, YPEL4, ZDHHC5, MIR130A, SERPING1, UBE2L6) 0.425947902492364 9 0.155786267402204 1.05378350721831 349 0.262428383073926 4 2 2 -6.84637564904604 LTS-025 chr11 57468130 57507983 39854 * c(TMX2-CTNND1, MED19, ZDHHC5, TMX2) 0.438 1 NA 1.04739196510257 93 0.245054007461957 3 3 0 -5.76896283543705 LTS-025 chr11 57507984 57958442 450459 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, SELENOH, TMX2, BTBD18) 0.235714890477236 9 0.236996366591933 1.06121698682838 411 0.545488085112719 4 3 1 -6.76249760688492 LTS-025 chr11 57958443 57958775 333 * OR9Q2 0.456 1 NA 1.28285249993535 7 0.465656679171622 4 4 0 -5.76441143714537 LTS-025 chr11 57958776 58170738 211963 * c(OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B3, OR10W1) 0.441762737893481 28 0.123436807730294 1.1258108879957 165 0.662042663297923 4 2 2 -6.94023720771131 LTS-025 chr11 58170739 58190022 19284 * c(OR5B2, OR5B3) 0 1 NA 1.12342348988123 11 1.18765882765594 4 4 0 -5.76448424106209 LTS-025 chr11 58190023 58978900 788878 * c(GLYAT, CNTF, OR5B21, GLYATL2, MPEG1, DTX4, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, FAM111A, ZFP91, GLYATL1, LPXN) 0.115146103156703 9 0.22159648011645 1.07033394120856 803 0.536863854046244 3 3 0 -6.8366644628916 LTS-025 chr11 58978901 59132798 153898 * c(MPEG1, OR5AN1) 0.414 1 NA 1.12072719522993 51 0.755942654220932 4 4 0 -5.76594438686636 LTS-025 chr11 59132799 59347560 214762 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9, OSBP) 0.465325298726832 10 0.025829354532306 1.06308894258272 212 0.325499792757841 4 2 2 -10.77747159587 LTS-025 chr11 59347561 59404858 57298 * c(MIR3162, PATL1, OSBP) 0 1 NA 1.01723692422375 91 0.251144070848476 3 3 0 -5.76770362706594 LTS-025 chr11 59404859 60152563 747705 * c(PATL1, OOSP2, MS4A2, MS4A6E, GIF, OR10V1, MS4A4A, MRPL16, MS4A7, MS4A6A, STX3, TCN1, OR10V2P, MS4A14, MS4A3) 0.232851912673686 9 0.241394386844433 1.06202220582903 733 0.353699919186251 4 3 1 -6.82396245579573 LTS-025 chr11 60152564 60157107 4544 * c(MS4A7, MS4A14) 0.386 1 NA 0.897443032525626 17 0.387254352878737 3 3 0 -5.76445121436755 LTS-025 chr11 60157108 60539052 381945 * c(MS4A15, LINC00301, MS4A13, MS4A12, MS4A7, MS4A5, MS4A8, MS4A14, MS4A1) 0.415131167652782 14 0.129499734820892 1.08289588704028 428 0.507161364835095 4 2 2 -6.82554525857256 LTS-025 chr11 60539053 60615557 76505 * c(MS4A15, MS4A10, CCDC86) 0 1 NA 1.06181165648663 111 0.519665953625888 3 3 0 -5.76688300927788 LTS-025 chr11 60615558 60714358 98801 * c(PTGDR2, ZP1, PRPF19, SLC15A3, TMEM132A, TMEM109, CCDC86) 0.0275773820681643 10 0.114249677850263 1.10503167537832 430 0.599725044645857 4 4 0 -6.73508892948092 LTS-025 chr11 60714359 60776186 61828 * c(SLC15A3, CD6) 0.473 1 NA 1.0162657418014 45 0.284489223314027 3 3 0 -5.76711237346002 LTS-025 chr11 60776187 60891421 115235 * c(CD5, CD6) 0.29148301308793 9 0.222983245509114 1.14826038509758 131 0.522973278840974 4 3 1 -6.74346584028998 LTS-025 chr11 60891422 61019030 127609 * c(PGA5, VPS37C, PGA3, PGA4, CD5) 0 1 NA 0.965217666870449 117 0.374241185898235 3 3 0 -5.76475902150816 LTS-025 chr11 61019031 61213950 194920 * c(DDB1, VWCE, CYB561A3, TKFC, TMEM216, TMEM138, SDHAF2, CPSF7) 0 14 0 1.05598768330004 814 0.423491850516982 0 0 0 -Inf LTS-025 chr11 61213951 61249383 35433 * c(PPP1R32, SDHAF2) 0.462 1 NA 1.20998954788624 29 0.440320365904806 4 4 0 -5.76445766720859 LTS-025 chr11 61249384 61534872 285489 * c(MIR4488, RPLP0P2, PPP1R32, DKFZP434K028, LRRC10B, MYRF, DAGLA, SYT7) 0.26739074871013 24 0.230936969881331 1.1095590725964 493 0.450922127645798 4 3 1 -6.74287109493992 LTS-025 chr11 61534873 61544321 9449 * MYRF 0 1 NA 1.06581071933236 41 0.7110040830386 3 3 0 -5.76458366710879 LTS-025 chr11 61544322 61674084 129763 * c(MIR1908, FEN1, FADS1, FADS3, RAB3IL1, MIR611, MYRF, TMEM258, FADS2) 0.107814124072123 13 0.210578111459005 1.04534630258748 653 0.375529805143673 3 3 0 -6.80910593580041 LTS-025 chr11 61674085 61674118 34 * RAB3IL1 0.478 1 NA 1.10071761905692 2 0.0615182899632296 4 4 0 -5.76447989193187 LTS-025 chr11 61674119 62012066 337948 * c(SCGB1D2, SCGB1D1, FTH1, INCENP, SCGB2A1, RAB3IL1, BEST1) 0.28908121389599 10 0.231828025340625 1.05879381150129 328 0.505219350164276 4 3 1 -6.75888356835521 LTS-025 chr11 62012067 62038865 26799 * c(SCGB1D2, SCGB2A2) NA 0 NA 1.09758397358057 24 0.172981773145553 4 NA NA -5.77192345730522 LTS-025 chr11 62038866 62105325 66460 * c(SCGB1D4, SCGB2A2, ASRGL1) 0.493 1 NA 0.922474788362491 33 0.293770050895305 3 3 0 -5.76459550764253 LTS-025 chr11 62105326 62574587 469262 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, EEF1G, LRRN4CL, HNRNPUL2, GANAB, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, ROM1, TUT1, STX5, SNORA57, SCGB1A1, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, ASRGL1, INTS5, MTA2) 0.4399694291162 23 0.129027910085484 0.992773612049564 1929 0.347607857663797 4 2 2 -7.02151456851545 LTS-025 chr11 62574588 62574791 204 * STX5 0 1 NA 1.1243232651921 5 0.740417990056968 4 4 0 -5.76441210827795 LTS-025 chr11 62574792 63177740 602949 * c(CHRM1, SLC22A9, SNHG1, SLC22A24, SLC22A25, SLC22A10, WDR74, SLC3A2, STX5, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.33535504921444 20 0.208790350654229 1.03845330395173 782 0.545356643047612 3 2 1 -6.74515561465733 LTS-025 chr11 63177741 63230302 52562 * HRASLS5 0 1 NA 1.18552944229419 29 0.720640357342372 4 4 0 -5.76451342676328 LTS-025 chr11 63230303 63586086 355784 * c(RTN3, PLA2G16, HRASLS5, C11orf84, ATL3, HRASLS2, RARRES3, C11orf95, LGALS12) 0.0622969700244017 9 0.159666666666667 0.992940407358098 637 0.306677926957857 3 3 0 -6.75642983475406 LTS-025 chr11 63586087 63595072 8986 * C11orf84 0.426 1 NA 0.988561892865384 41 0.238248235987634 3 3 0 -5.76463966238777 LTS-025 chr11 63595073 63978669 383597 * c(STIP1, COX8A, C11orf84, MARK2, FLRT1, RCOR2, MACROD1, OTUB1, NAA40, FERMT3) 0.344319025666125 15 0.208478319073734 1.0271945647382 629 0.307919407225307 3 2 1 -6.75432354377118 LTS-025 chr11 63978670 63988102 9433 * FERMT3 0.492 1 NA 1.02241231125393 36 0.146532286923774 3 3 0 -5.76621785714303 LTS-025 chr11 63988103 64034773 46671 * c(FKBP2, PPP1R14B, DNAJC4, PLCB3, VEGFB, FERMT3, TRPT1, NUDT22) 0.45987680110617 10 0.0333701463387062 1.03399865321757 355 0.276671601559346 4 2 2 -9.49634562552626 LTS-025 chr11 64034774 64034866 93 * PLCB3 0.47 1 NA 0.819640677380065 3 0.472963353055322 3 3 0 -5.76441484932712 LTS-025 chr11 64034867 64083587 48721 * c(ESRRA, TEX40, KCNK4, PLCB3, GPR137, BAD) 0.219928207495944 9 0.222616823263652 1.03019629484125 242 0.240425903345471 4 3 1 -6.77312931066538 LTS-025 chr11 64083588 64089216 5629 * c(ESRRA, PRDX5, TRMT112) 0.483 1 NA 1.01804788088626 70 0.204740271763978 3 3 0 -5.76490715860006 LTS-025 chr11 64089217 64127902 38686 * c(PRDX5, CCDC88B, RPS6KA4) 0.464305044988423 13 0.0234507120880347 0.998359301259524 205 0.269699145754058 4 2 2 -11.1538197741186 LTS-025 chr11 64127903 64132822 4920 * RPS6KA4 0 1 NA 1.07522999032359 23 0.39249782859851 3 3 0 -5.76475002200726 LTS-025 chr11 64132823 64368346 235524 * c(MIR1237, LOC100996455, SLC22A12, SLC22A11, RPS6KA4) 0.124326985503249 16 0.20305791456298 1.08978263650304 290 0.418460451100158 3 3 0 -6.86308278209791 LTS-025 chr11 64368347 64369540 1194 * SLC22A12 0.443 1 NA 0.984089496623312 17 0.301751736190726 3 3 0 -5.76442579058268 LTS-025 chr11 64369541 64646034 276494 * c(RASGRP2, EHD1, SLC22A12, MEN1, CDC42BPG, PYGM, MAP4K2, SF1, NRXN2) 0.379595293447206 33 0.168612182779947 1.02897539581182 1045 0.446768674715078 4 2 2 -6.76333208260168 LTS-025 chr11 64646035 64656757 10723 * EHD1 0.484 1 NA 0.915346965289491 17 0.214106831498011 3 3 0 -5.76451848809117 LTS-025 chr11 64656758 64825735 168978 * c(NAALADL1, ARL2-SNX15, BATF2, GPHA2, ATG2A, MAJIN, SAC3D1, ARL2, MIR192, MIR194-2, PPP2R5B) 0.137786273645112 9 0.219247576953544 1.03065139483605 646 0.3888431607751 3 3 0 -6.86646396482826 LTS-025 chr11 64825736 64845438 19703 * c(NAALADL1, CDCA5) 0.478 1 NA 0.982592619230335 47 0.234597553324629 3 3 0 -5.7648091857446 LTS-025 chr11 64845439 65349756 504318 * c(TMEM262, CDC42EP2, SSSCA1, CDCA5, FAU, TIGD3, FAM89B, POLA2, SSSCA1-AS1, EHBP1L1, SLC25A45, NEAT1, MALAT1, SPDYC, LTBP3, SLC22A20, SCYL1, DPF2, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, CAPN1, FRMD8, SYVN1) 0.440453306550157 35 0.113694474858919 1.00255146786287 1747 0.239204826639539 4 2 2 -7.18701958583713 LTS-025 chr11 65349757 65357660 7904 * EHBP1L1 0 1 NA 0.944534309030234 57 0.25197069885744 3 3 0 -5.76441110354912 LTS-025 chr11 65357661 65746254 388594 * c(MIR4489, MIR4690, KCNK7, KAT5, DRAP1, CFL1, CCDC85B, CTSW, EHBP1L1, SNX32, TSGA10IP, EFEMP2, PCNX3, MAP3K11, OVOL1, RELA, SIPA1, MUS81, FOSL1, C11orf68, RNASEH2C, SART1, AP5B1, FIBP) 0.163884894240921 16 0.222858391136614 1.03878693860342 1514 0.307852986007466 4 3 1 -6.92485521005269 LTS-025 chr11 65746255 65747057 803 * SART1 0.416 1 NA 1.07771917876404 17 0.414620902327727 3 3 0 -5.76446153604978 LTS-025 chr11 65747058 65810612 63555 * c(CATSPER1, CST6, EIF1AD, BANF1, GAL3ST3, SART1) 0.393118550460547 13 0.123803918582613 0.960773545624434 229 0.371251481312149 4 2 2 -6.77426449859452 LTS-025 chr11 65810613 65987310 176698 * c(SF3B2, PACS1, GAL3ST3) 0 1 NA 0.933592905969772 209 0.313441222530792 3 3 0 -5.7644800588681 LTS-025 chr11 65987311 66063147 75837 * c(YIF1A, CNIH2, TMEM151A, PACS1, KLC2, RAB1B) 0.261694637037476 13 0.234287736746385 1.04579244725063 423 0.446518415163672 4 3 1 -6.73942118528776 LTS-025 chr11 66063148 66083129 19982 * c(TMEM151A, CD248) 0.488 1 NA 1.00200125519884 45 0.219932324301653 3 3 0 -5.76538324111623 LTS-025 chr11 66083130 66206169 123040 * c(B4GAT1, BRMS1, NPAS4, SLC29A2, CD248, MRPL11, RIN1) 0.458358829479241 13 0.02843954451653 1.04293960306203 432 0.261655027507834 4 2 2 -10.06005677491 LTS-025 chr11 66206170 66241869 35700 * c(PELI3, MRPL11) 0 1 NA 1.07525697810593 47 0.510354947132782 3 3 0 -5.76586937465182 LTS-025 chr11 66241870 66358126 116257 * c(DPP3, PELI3, ZDHHC24, CCDC87, BBS1, CTSF, ACTN3) 0.319360331725829 20 0.210960578756965 1.02311730093734 532 0.438226728630406 3 2 1 -6.73713340305087 LTS-025 chr11 66358127 66373261 15135 * c(CCDC87, CCS) 0 1 NA 1.10287545540522 91 0.411422439158614 4 4 0 -5.76510126269997 LTS-025 chr11 66373262 66834252 460991 * c(RBM14-RBM4, RBM14, C11orf86, RHOD, PC, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, SYT12, CCS, RCE1) 0.175515036065653 14 0.236803391347857 1.0678730027092 926 0.340145964007083 4 3 1 -6.86607574323394 LTS-025 chr11 66834253 66837718 3466 * RHOD 0 1 NA 1.49451960918992 5 1.47582407488156 5 5 0 -5.76441065295112 LTS-025 chr11 66837719 67407017 569299 * c(LOC100130987, CDK2AP2, GRK2, KDM2A, CLCF1, NUDT8, GSTP1, RHOD, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, TMEM134, AIP, PITPNM1) 0.0830296446967604 9 0.162666666666667 1.04246673745411 1492 0.283897507000178 3 3 0 -6.82787644232953 LTS-025 chr11 67407018 67414492 7475 * c(TBX10, ACY3) 0.496 1 NA 1.11913275067458 35 0.24487360141973 4 4 0 -5.76514122139701 LTS-025 chr11 67414493 68524053 1109561 * c(MIR4691, TCIRG1, CHKA, CPT1A, ALDH3B1, ALDH3B2, LRP5, NDUFS8, GAL, KMT5B, C11orf24, PPP6R3, FAM86C2P, UNC93B1, ACY3, TESMIN) 0.372646930384288 14 0.199513102381718 1.04636599081946 1069 0.263571800997602 3 2 1 -6.86588523790303 LTS-025 chr11 68524054 68530152 6099 * CPT1A 0 1 NA 1.02552710816585 37 0.724406377041988 3 3 0 -5.76446154746469 LTS-025 chr11 68530153 68852800 322648 * c(MRGPRD, MRGPRF, CPT1A, MRPL21, TPCN2, IGHMBP2) 0 2 0 1.01382553975956 401 0.333840137201899 0 0 0 -Inf LTS-025 chr11 68852801 68853175 375 * TPCN2 NA 0 NA 1.608 1 NA NA NA NA NA LTS-025 chr11 68853176 69588827 735652 * c(TPCN2, ORAOV1, FGF4, MYEOV, CCND1, FGF19) 0.206544907213495 12 0.24050867810211 1.11440300535952 358 0.62661436069079 4 3 1 -6.77903801741637 LTS-025 chr11 69588828 69631046 42219 * c(FGF3, FGF4) 0.49 1 NA 1.24557506293313 23 0.714396799097858 4 4 0 -5.76441344356306 LTS-025 chr11 69631047 70316391 685345 * c(MIR548K, CTTN, FGF3, SHANK2, ANO1, PPFIA1, FADD) 0.359030901999294 15 0.191743057240673 1.05921146920639 583 0.296983783014163 3 2 1 -6.81103390665806 LTS-025 chr11 70316392 70318275 1884 * SHANK2 0 1 NA 1.10946599041656 41 0.757149999637601 4 4 0 -5.76443293203563 LTS-025 chr11 70318276 73106935 2788660 * c(LOC100129216, LOC100133315, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, ARAP1, DHCR7, SHANK2-AS3, LRTOMT, SHANK2, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, PDE2A, LAMTOR1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, CLPB, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.0348149264651148 37 0.1417511618714 1.07835485117418 2805 0.461965052143998 3 3 0 -6.87486633335436 LTS-025 chr11 73106936 73363949 257014 * c(FAM168A, PLEKHB1, RELT) 0 1 NA 1.01480014328556 119 0.229887218684168 3 3 0 -5.78093448015304 LTS-025 chr11 73363950 73768553 404604 * c(C2CD3, DNAJB13, COA4, MRPL48, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1) 0.464080679737828 9 0.0373467237890792 0.992538478333225 581 0.293079947849058 4 2 2 -9.3802261040605 LTS-025 chr11 73768554 73768588 35 * C2CD3 0 1 NA 5.195 1 NA NA NA NA NA LTS-025 chr11 73768589 74022429 253841 * c(C2CD3, P4HA3, PPME1) 0.122795453598542 9 0.228544306426566 1.0176677810169 347 0.414240191233359 3 3 0 -6.82479363768469 LTS-025 chr11 74022430 74041592 19163 * c(P4HA3, PGM2L1) 0.494 1 NA 0.983415447740151 13 0.195568992351116 3 3 0 -5.7649904960668 LTS-025 chr11 74041593 74553074 511482 * c(KCNE3, MIR4696, POLD3, XRRA1, RNF169, CHRDL2, PGM2L1, LIPT2) 0.446385609649105 22 0.0395714051291599 1.05957502261145 705 0.306337276061118 4 2 2 -8.53304210016931 LTS-025 chr11 74553075 74618216 65142 * c(XRRA1, RNF169) 0 1 NA 1.03746170532605 77 0.717564438579093 3 3 0 -5.76513078577 LTS-025 chr11 74618217 75141630 523414 * c(TPBGL, NEU3, SLCO2B1, SNORD15B, XRRA1, KLHL35, OR2AT4, ARRB1, MIR326, SNORD15A, RPS3, SPCS2) 0.296471397327826 17 0.230559358185823 1.00059484517742 645 0.411571919508044 3 2 1 -6.75275969293684 LTS-025 chr11 75141631 75173779 32149 * c(KLHL35, GDPD5) 0 1 NA 1.10268773595677 96 0.172269074708368 4 4 0 -5.77279824939754 LTS-025 chr11 75173780 76116116 942337 * c(LOC283214, MAP6, THAP12, UVRAG, WNT11, MOGAT2, GDPD5, DGAT2, SERPINH1) 0.114984131924354 10 0.195190192148866 1.03111446488459 665 0.516519047257608 3 3 0 -6.84859894191241 LTS-025 chr11 76116117 76368639 252523 * c(LRRC32, EMSY) 0.5 1 NA 1.04601284342232 265 0.248255594372456 3 3 0 -5.79172621520088 LTS-025 chr11 76368640 76814110 445471 * c(B3GNT6, TSKU, LRRC32, GUCY2EP, OMP, ACER3, CAPN5) 0.449517263337043 15 0.0315410541237622 1.06981928307466 516 0.288194591077511 4 2 2 -9.32666688003151 LTS-025 chr11 76814111 76834674 20564 * c(OMP, CAPN5) 0 1 NA 1.22329566369794 49 0.414578995123099 4 4 0 -5.76441714698811 LTS-025 chr11 76834675 77048308 213634 * c(GDPD4, MYO7A, PAK1, CAPN5) 0.120356420303255 16 0.216658217783987 1.09397160137129 458 0.512839797898805 3 3 0 -6.83476474221883 LTS-025 chr11 77048309 77336063 287755 * c(CLNS1A, AQP11, PAK1) 0.488 1 NA 0.987140116259924 127 0.277559573714149 3 3 0 -5.76950959204929 LTS-025 chr11 77336064 77850097 514034 * c(NDUFC2-KCTD14, CLNS1A, AAMDC, NDUFC2, RSF1, KCTD14, THRSP, ALG8, INTS4) 0.417113741101358 9 0.153079318582811 1.01812026577883 647 0.228295426869138 3 2 1 -6.95700668051721 LTS-025 chr11 77850098 77884782 34685 * c(KCTD21-AS1, KCTD21, ALG8) 0.478 1 NA 1.07749821136184 63 0.223426386602869 3 3 0 -5.77203267525741 LTS-025 chr11 77884783 78367169 482387 * c(KCTD21-AS1, TENM4, KCTD21, USP35, NARS2, GAB2) 0.029784380816958 9 0.158 1.09285070776735 433 0.391054252633435 4 4 0 -6.76143883046432 LTS-025 chr11 78367170 78383336 16167 * TENM4 0.424 1 NA 1.09348965333437 101 0.35818395600115 4 4 0 -5.76553627863915 LTS-025 chr11 78383337 82564294 4180958 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4, PRCP) 0.460284708464351 9 0.0209728660681155 1.07275819989504 307 0.299604050409502 4 2 2 -11.9733048940358 LTS-025 chr11 82564295 82888828 324534 * c(SNORA70E, RAB30-AS1, DDIAS, RAB30, PCF11, PRCP) 0 1 NA 0.984940861615823 473 0.234508820977241 3 3 0 -5.77172859902576 LTS-025 chr11 82888829 85968623 3079795 * c(DLG2, CCDC83, CCDC89, ANKRD42, PCF11, SYTL2, TMEM126B, CREBZF, CCDC90B, PICALM, TMEM126A, EED) 0.16491788925385 9 0.232329507381219 1.00775970877091 1375 0.343698896470771 3 3 0 -6.9860396941759 LTS-025 chr11 85968624 86098680 130057 * c(HIKESHI, CCDC81, EED) 0.468 1 NA 0.997651068480456 169 0.236375205283007 3 3 0 -5.76915550743671 LTS-025 chr11 86098681 89903334 3804654 * c(NAALAD2, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, TRIM64, FOLH1B, RAB38, GRM5, TRIM77, NOX4, TRIM49, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, FZD4, OR7E2P) 0.384469975738136 42 0.151642216379931 1.0295720575281 1352 0.468661575530666 3 2 1 -6.891704975436 LTS-025 chr11 89903335 89925600 22266 * NAALAD2 0 1 NA 1.12658710791125 43 0.417156707623638 4 4 0 -5.76506320803084 LTS-025 chr11 89925601 93141564 3215964 * c(NAALAD2, MIR4490, SLC36A4, FAT3, DEUP1, CHORDC1, MTNR1B) 0.134674969213511 12 0.216325284670745 1.12909998808775 838 0.410023154720222 4 4 0 -6.96704087103849 LTS-025 chr11 93141565 93171107 29543 * DEUP1 0.444 1 NA 1.03899108460317 19 0.299896717113863 3 3 0 -5.76633781083835 LTS-025 chr11 93171108 93517886 346779 * c(MIR1304, DEUP1, C11orf54, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.412348739592027 14 0.170039685089965 1.05932071175914 497 0.269714773431619 4 2 2 -6.83972535432285 LTS-025 chr11 93517887 93529594 11708 * MED17 0 1 NA 1.09494695779453 55 0.392499786184505 4 4 0 -5.76507460286339 LTS-025 chr11 93529595 94163120 633526 * c(GPR83, PANX1, HEPHL1, VSTM5, IZUMO1R, MRE11A, MED17) 0.108292986568551 15 0.220755456169426 1.0464620515278 482 0.620281800053528 3 3 0 -6.80871990338934 LTS-025 chr11 94163121 94264927 101807 * c(MRE11A, ANKRD49, C11orf97) 0.422 1 NA 0.985087687719425 197 0.234810627348593 3 3 0 -5.76671699662794 LTS-025 chr11 94264928 96125833 1860906 * c(MIR1260B, FAM76B, SESN3, PIWIL4, AMOTL1, ENDOD1, FUT4, KDM4E, CWC15, KDM4D, C11orf97, CCDC82, MAML2, JRKL, MTMR2, CEP57) 0.304087668561538 22 0.22554856648659 1.06156605837977 1603 0.334884558529167 3 2 1 -6.88201781941024 LTS-025 chr11 96125834 96125839 6 * JRKL NA 0 NA 1.199 1 NA NA NA NA NA LTS-025 chr11 96125840 101454595 5328756 * c(MIR3920, JRKL-AS1, LOC101054525, ARHGAP42, PGR, CNTN5, TRPC6, TMEM133, JRKL) 0.380103625922752 17 0.136169984599699 1.2366744355045 823 0.319686043364814 4 2 2 -6.73747763400737 LTS-025 chr11 101454596 101832582 377987 * c(ANGPTL5, CEP126, TRPC6) NA 0 NA 1.24652330176459 112 0.363049602777054 4 NA NA -5.76454722326147 LTS-025 chr11 101832583 101868759 36177 * CEP126 0 1 NA 1.09955009639756 69 0.348021968101627 4 4 0 -5.76684271290749 LTS-025 chr11 101868760 102272455 403696 * c(YAP1, TMEM123, BIRC2, BIRC3, CEP126, C11orf70) 0.0682172463178647 9 0.165801169410164 1.10828654720352 555 0.310697428338976 4 4 0 -6.79756102524744 LTS-025 chr11 102272456 102391425 118970 * c(TMEM123, MMP7) 0.432 1 NA 1.16869072275165 51 0.202626485309842 4 4 0 -5.76976988754559 LTS-025 chr11 102391426 102980324 588899 * c(WTAPP1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MMP27, DYNC2H1, DCUN1D5, MMP20) 0.394220536692116 27 0.14919941148498 1.05599173443221 675 0.380840376113471 4 2 2 -6.81034385439867 LTS-025 chr11 102980325 103027355 47031 * DYNC2H1 0 1 NA 1.06697239784869 111 0.31661101420534 3 3 0 -5.76883981935737 LTS-025 chr11 103027356 104822726 1795371 * c(CASP12, MIR4693, DDI1, LOC643733, DYNC2H1, PDGFD, CASP4) 0.153361914941669 9 0.220621533652341 1.08697124488496 561 0.333422733593259 4 3 1 -7.03510804381912 LTS-025 chr11 104822727 104825649 2923 * CASP4 0.462 1 NA 1.14598960348364 5 0.353351807693126 4 4 0 -5.76448946290874 LTS-025 chr11 104825650 107992346 3166697 * c(CARD16, KBTBD3, CWF19L2, GRIA4, GUCY1A2, ACAT1, CARD17, SLC35F2, RAB39A, ELMOD1, CARD18, AASDHPPT, LOC643923, SLN, CUL5, CASP1, CASP4, CASP5, MSANTD4, ALKBH8) 0.319001273516512 40 0.213802351513777 1.07203981083966 1466 0.388472142970948 3 2 1 -6.94093109467715 LTS-025 chr11 107992347 108007066 14720 * ACAT1 0 1 NA 1.06402477131864 25 0.319803976418889 3 3 0 -5.76571037833164 LTS-025 chr11 108007067 110039386 2032320 * c(KDELC2, C11orf65, DDX10, EXPH5, ACAT1, C11orf87, ATM, NPAT, ZC3H12C) 0.215401615142531 14 0.234268888433595 1.09501938783891 1432 0.343219792767804 4 3 1 -6.90581048626133 LTS-025 chr11 110039387 110039485 99 * ZC3H12C NA 0 NA 0.987 1 NA NA NA NA NA LTS-025 chr11 110039486 111228270 1188785 * c(MIR4491, COLCA2, FDX1, C11orf53, COLCA1, POU2AF1, ARHGAP20, RDX, ZC3H12C) 0.168061002300605 12 0.237959061923506 1.02221321846032 632 0.464983781380253 3 3 0 -6.93620303279935 LTS-025 chr11 111228271 111412408 184138 * c(LOC100132078, LAYN, C11orf88, MIR34B, MIR34C, POU2AF1, BTG4) 0.449 1 NA 1.02915797056965 203 0.23779650620676 3 3 0 -5.77998724282883 LTS-025 chr11 111412409 115375100 3962692 * c(NCAM1-AS1, MIR4301, HSPB2-C11orf52, RBM7, PIH1D2, NXPE1, NXPE2, CRYAB, LAYN, DLAT, DRD2, SIK2, CADM1, ANKK1, REXO2, TIMM8B, HSPB2, HTR3A, PLET1, IL18, NCAM1, NNMT, C11orf71, NXPE4, TTC12, PPP2R1B, C11orf57, TEX12, USP28, PTS, SDHD, CLDN25, C11orf1, ZBTB16, ALG9, TMPRSS5, BCO2, DIXDC1, HTR3B, ZW10, FDXACB1) 0.358669742726427 84 0.16667445191226 1.02685990425566 3097 0.33028619954448 3 2 1 -6.91174262847711 LTS-025 chr11 115375101 116619075 1243975 * c(CADM1, LINC00900, BUD13) NA 0 NA 0.843098049540831 19 0.179377285424648 3 NA NA -6.0327588633953 LTS-025 chr11 116619076 116619136 61 * BUD13 NA 0 NA 0.715 1 NA NA NA NA NA LTS-025 chr11 116619137 116631653 12517 * BUD13 0 1 NA 0.604014964594534 36 0.220926979245927 2 2 0 -5.76513167811234 LTS-025 chr11 116631654 119006442 2374789 * c(LOC100131626, BACE1-AS, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, SLC37A4, RNF214, HINFP, BCL9L, FOXR1, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, RPS25, SCN2B, SCN4B, CXCR5, RPL23AP64, TAGLN, NA NA NA NA NA NA NA NA NA LTS-025 UPK2, TMPRSS13, BUD13, TMEM25, ZPR1, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.0745802099473699 99 0.0813031387528029 0.584192994058824 5324 0.289277533415804 2 2 0 -6.96029004058466 LTS-025 NA NA NA NA LTS-025 chr11 119006443 119006704 262 * character(0) NA 0 NA 1.223 1 NA NA NA NA NA LTS-025 chr11 119006705 134251777 15245073 * c(LOC100128239, PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, CCDC153, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, NA NA NA NA NA NA NA NA NA LTS-025 C11orf44, MIR4697HG, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ABCG4, HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, THY1, ZNF202, RNF26, FAM118B, NLRX1, MSANTD2, CLMP, PDZD3, C11orf63, CCDC15, PUS3, MFRP, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, GLB1L2, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.0723475265944593 352 0.0654579913544166 0.617483139004053 11628 0.37220004158207 2 2 0 -6.94302483859749 LTS-025 NA NA NA NA LTS-025 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 0.683386616086188 39 0.134343422599253 2 NA NA -5.82458214325562 LTS-025 chr12 90923 335648 244726 * c(LOC100288778, IQSEC3, LOC574538, SLC6A12, SLC6A13, FAM138D) 0 1 NA 1.07210030310003 319 0.247191775950402 3 3 0 -5.80492481007391 LTS-025 chr12 335649 1995491 1659843 * c(LINC00942, MIR3649, FBXL14, ERC1, B4GALNT3, NINJ2, RAD52, KDM5A, WNK1, SLC6A13, LRTM2, ADIPOR2, WNT5B, CCDC77, CACNA2D4) 0.277165901327865 38 0.230126126590187 1.02672468713972 1806 0.40621996725931 3 2 1 -6.81005342794979 LTS-025 chr12 1995492 2024092 28601 * CACNA2D4 0.42 1 NA 1.00984067303375 29 0.245446928237615 3 3 0 -5.76582382948068 LTS-025 chr12 2024093 4411639 2387547 * c(LINC00940, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, DCP1B, FKBP4, FOXM1, LOC283440, ITFG2, PRMT8, PARP11, TEAD4, TULP3, CACNA1C, RHNO1, NRIP2, CRACR2A, CCND2, CACNA2D4) 0.392206101107391 47 0.156737780161261 1.06155307975472 1771 0.376077602311936 3 2 1 -6.96895903408306 LTS-025 chr12 4411640 4413126 1487 * CCND2 0 1 NA 0.975802739602708 31 0.468369266596852 3 3 0 -5.76441545200244 LTS-025 chr12 4413127 4651011 237885 * c(RAD51AP1, FGF6, C12orf4, TIGAR, FGF23, CCND2) 0.151676763900643 9 0.216543554766959 1.07706667963365 303 0.456326807910965 5 4 1 -6.86928948631757 LTS-025 chr12 4651012 4655670 4659 * RAD51AP1 0.426 1 NA 0.811378082740963 21 0.211119070443108 3 3 0 -5.76578990462998 LTS-025 chr12 4655671 4797844 142174 * c(AKAP3, RAD51AP1, NDUFA9, DYRK4) 0.32779414813982 9 0.200782220328395 1.0201766753378 344 0.398742915757727 3 2 1 -6.73659972260887 LTS-025 chr12 4797845 4798436 592 * character(0) 0 1 NA 1.05942523085086 13 0.142821477232853 3 3 0 -5.76465378983424 LTS-025 chr12 4798437 6180436 1382000 * c(GALNT8, KCNA1, KCNA5, KCNA6, NTF3, ANO2, VWF) 0.163890038381179 27 0.232543173701848 1.0875918230019 735 0.625809392419391 4 3 1 -6.87648097741726 LTS-025 chr12 6180437 6421495 241059 * c(PLEKHG6, VWF, CD9) 0.434 1 NA 1.09003315969763 112 0.215767486029917 4 4 0 -5.81273543401681 LTS-025 chr12 6421496 6980951 559456 * c(P3H3, CHD4, ZNF384, PIANP, IFFO1, GAPDH, GPR162, GNB3, LAG3, LTBR, NOP2, COPS7A, ING4, MRPL51, TAPBPL, PLEKHG6, LPAR5, PTMS, SCNN1A, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, TPI1, USP5, MLF2, CDCA3, ACRBP, SPSB2, CD4, CD27, NCAPD2) 0.402962570249966 41 0.138179809509557 1.02089945591557 2285 0.304120325195532 4 2 2 -6.89952974109469 LTS-025 chr12 6980952 7026657 45706 * c(LRRC23, DSTNP2, ENO2, RPL13P5, SPSB2) 0 1 NA 1.03486127666218 103 0.282986238725179 3 3 0 -5.76749467379753 LTS-025 chr12 7026658 7843115 816458 * c(LPCAT3, EMG1, C12orf57, PHB2, ATN1, ENO2, C1RL-AS1, CD163L1, APOBEC1, ACSM4, MIR141, MIR200C, C1RL, PTPN6, PEX5, SCARNA12, C1R, C1S, RBP5, CD163, GDF3, CLSTN3) 0.218649602924561 26 0.232729661591761 1.06215660084345 1474 0.385631115888127 4 3 1 -6.83006587580812 LTS-025 chr12 7843116 8052222 209107 * c(SLC2A14, CLEC4C, DPPA3, NANOGNB, NANOG, GDF3) 0.222806829251564 2 0.345068109219035 0.888238577523281 250 0.247081014013509 3 2 1 -6.79741402683623 LTS-025 chr12 8052223 8091096 38874 * SLC2A3 NA 0 NA 0.909908799741248 118 0.248128560983223 3 NA NA -5.76484151011922 LTS-025 chr12 8091097 8192349 101253 * FOXJ2 NA 0 NA 0.542 1 NA NA NA NA NA LTS-025 chr12 8192350 8196765 4416 * FOXJ2 0 1 NA 0.53183016733904 25 0.164496636237138 2 2 0 -5.76815938959742 LTS-025 chr12 8196766 9447348 1250583 * c(LINC00987, KLRG1, A2ML1, A2M-AS1, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.082994259214036 37 0.0587842545975416 0.584795057925981 1590 0.225436723880801 2 2 0 -7.06591871863328 LTS-025 chr12 9447349 9447382 34 * LOC642846 NA 0 NA 0.512 1 NA NA NA NA NA LTS-025 chr12 9447383 9462984 15602 * LOC642846 0.0718195129580521 4 0.0301482448355898 0.480243257203486 52 0.644359109320809 16 15 1 -6.85016109274237 LTS-025 chr12 9462985 9464241 1257 * LOC642846 0.287 1 NA 0.72353453922761 7 0.19562464057475 2 2 0 -5.76465742534306 LTS-025 chr12 9464242 9590652 126411 * c(DDX12P, LOC642846) 0.289380136143249 5 0.0854388670336867 0.535613290293826 100 0.307364587906593 3 2 1 -7.1114956064192 LTS-025 chr12 9590653 9717935 127283 * DDX12P NA 0 NA 0.0800605856907584 97 0.0437850080848421 0 NA NA -8.32538065716785 LTS-025 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.313 1 NA NA NA NA NA LTS-025 chr12 9747241 10015177 267937 * c(CLECL1, CLEC2D, LOC374443, KLRB1, KLRF1, CD69, CLEC2B) 0.160825839092298 8 0.158325162696449 0.548123494642572 236 0.157028054209658 2 2 0 -7.18852788129488 LTS-025 chr12 10015178 10015277 100 * CLEC2B NA 0 NA 0.375245455270113 3 0.0213619599600162 1 NA NA -5.76491799947914 LTS-025 chr12 10015278 10034108 18831 * c(KLRF2, CLEC2B) NA 0 NA 1.084 1 NA NA NA NA NA LTS-025 chr12 10034109 10051433 17325 * c(KLRF2, CLEC2A) 0.497 1 NA 1.08609442437389 33 0.307777769345075 4 4 0 -5.76623118673508 LTS-025 chr12 10051434 10222786 171353 * c(CLEC12A, CLEC9A, CLEC2A, CLEC12B, CLEC1B) 0.414514767368111 13 0.128029694071737 0.929814218167061 326 0.309938733476038 4 2 2 -6.89505000834128 LTS-025 chr12 10222787 10223693 907 * CLEC1A 0 1 NA 0.891239012155214 23 0.48689716147232 3 3 0 -5.76441693984038 LTS-025 chr12 10223694 10468241 244548 * c(TMEM52B, GABARAPL1, KLRD1, OLR1, CLEC1A, CLEC7A) 0.245501687241043 11 0.239443635424821 0.934881921066688 372 0.520597181629875 4 3 1 -6.77839910559936 LTS-025 chr12 10468242 10468254 13 * KLRD1 0.455 1 NA 0.915 1 NA NA NA NA NA LTS-025 chr12 10468255 10865971 397717 * c(KLRC4-KLRK1, KLRA1P, KLRK1, KLRC1, KLRC2, KLRC3, KLRD1, MAGOHB, STYK1, KLRC4, YBX3) 0.428320323250888 23 0.138618280425001 0.967776686688458 476 0.346756554711362 4 2 2 -6.95910375319249 LTS-025 chr12 10865972 11035511 169540 * c(PRH1-PRR4, PRR4, TAS2R9, TAS2R8, TAS2R7, TAS2R10, PRB4, PRH1, YBX3) 0 1 NA 0.955757510480972 187 0.473238113488296 3 3 0 -5.76451805029645 LTS-025 chr12 11035512 11215070 179559 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH1, PRH2) 0.251247711675366 39 0.104212767666296 1.07062162650227 269 0.577271384100776 4 3 1 -6.74866106775006 LTS-025 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.162 1 NA NA NA NA NA LTS-025 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) NA 0 NA 0.139397104837365 53 0.0932218081525963 0 NA NA -5.82300370958747 LTS-025 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.183 1 NA NA NA NA NA LTS-025 chr12 11285579 11286790 1212 * c(PRH1-PRR4, TAS2R30, PRB4) 0.228595073714118 3 0.0250266524595946 0.931305423854736 27 0.298086509174043 9 7 2 -6.75725069391702 LTS-025 chr12 11286791 11338559 51769 * c(SMIM10L1, PRH1-PRR4, TAS2R30, PRB4) 0.385 1 NA 1.02527639359808 11 0.0987848902689806 3 3 0 -5.7876574116682 LTS-025 chr12 11338560 13155166 1816607 * c(LOC100506314, CDKN1B, BORCS5, CREBL2, ETV6, GPR19, LINC01252, TAS2R42, RPL13AP20, LRP6, LOH12CR2, HEBP1, DDX47, MANSC1, PRB1, PRB3, PRB4, GPRC5D, PRB2, MIR613, MIR614, BCL2L14, DUSP16, APOLD1, GPRC5A, HTR7P1) 0.407550284674603 40 0.143467668116798 1.01432337920943 1318 0.353152721807268 3 2 1 -6.95135542046948 LTS-025 chr12 13155167 13215776 60610 * c(FAM234B, HTR7P1) 0 1 NA 0.984866399524112 31 0.474545215222241 3 3 0 -5.76474319457639 LTS-025 chr12 13215777 14849420 1633644 * c(EMP1, LINC01559, GRIN2B, GUCY2C, ATF7IP, FAM234B, PLBD1, GSG1) 0.20465561060334 20 0.22980423590984 1.07842376840834 858 0.446930881068926 4 3 1 -6.86214251341657 LTS-025 chr12 14849421 14923522 74102 * GUCY2C 0.411 1 NA 1.04129206953524 9 0.377068885542741 3 3 0 -5.76760637878932 LTS-025 chr12 14923523 15095162 171640 * c(HIST4H4, ERP27, C12orf60, ARHGDIB, ART4, MGP, SMCO3, WBP11, H2AFJ) 0.446785407504837 9 0.0395772802389339 1.00583567108425 449 0.223443036513421 4 2 2 -8.55591815874849 LTS-025 chr12 15095163 15261772 166610 * c(ARHGDIB, PDE6H, RERG) 0 1 NA 1.01243401850829 83 0.451924602788934 3 3 0 -5.76701893656564 LTS-025 chr12 15261773 15731744 469972 * c(PTPRO, RERG) 0.242253800404073 9 0.24658974025697 1.03538043678543 159 0.669171316165117 4 3 1 -6.75729364394715 LTS-025 chr12 15731745 15733116 1372 * PTPRO 0.482 1 NA 0.91545410828282 7 0.131726990400601 3 3 0 -5.76444643030922 LTS-025 chr12 15733117 27477107 11743991 * c(MIR920, MIR4302, LOC100506393, RASSF8-AS1, ABCC9, MIR3974, SLCO1B1, STRAP, RASSF8, AEBP2, LINC00477, ETFRF1, LMNTD1, C12orf77, EPS8, STK38L, FGFR1OP2, SLCO1B3, GYS2, IAPP, SLCO1B7, ITPR2, KCNJ8, KRAS, LDHB, LRMP, MGST1, GOLT1B, DERA, PDE3A, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, CASC1, ETNK1, ASUN, LMO3, CMAS, PTPRO, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, SKP1P2, C12orf71, SLC15A5, BHLHE41, RERGL, PYROXD1, NA NA NA NA NA NA NA NA NA LTS-025 SPX, SSPN, PLCZ1, CAPZA3, MED21, C2CD5) 0.389295879865257 109 0.162567165345238 1.05214608529069 5169 0.340218007102186 3 2 1 -7.48626182079536 LTS-025 NA NA NA NA LTS-025 chr12 27477108 27538503 61396 * c(STK38L, ARNTL2) 0 1 NA 0.989850447800035 74 0.314675625902624 3 3 0 -5.76535734540293 LTS-025 chr12 27538504 29653928 2115425 * c(MANSC4, OVCH1-AS1, SMCO2, OVCH1, REP15, ERGIC2, CCDC91, FAR2, ARNTL2, PTHLH, KLHL42, MRPS35, TMTC1, PPFIBP1) 0.267479540871683 26 0.224732966326363 1.10474105796339 1225 1.96043319706948 4 3 1 -6.73729790263429 LTS-025 chr12 29653929 29654172 244 * TMTC1 0.471 1 NA 1.0910237725705 7 0.235060275957749 4 4 0 -5.76445091479182 LTS-025 chr12 29654173 32797905 3143733 * c(LINC00941, DDX11-AS1, RNU6-78P, DENND5B-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, H3F3C, TSPAN11, KIAA1551, FAM60A, BICD1, CAPRIN2, FLJ13224, TMTC1) 0.40178309141124 95 0.145122168868083 1.02621911706733 1981 0.348190953414166 3 2 1 -6.99006951827366 LTS-025 chr12 32797906 32798682 777 * FGD4 0 1 NA 1.02957782682465 13 0.245641807182526 3 3 0 -5.76447237770942 LTS-025 chr12 32798683 32943942 145260 * c(DNM1L, FGD4, YARS2, PKP2) 0.206631955226046 6 0.247776512204042 0.994697634842205 216 0.243482878368419 4 3 1 -6.83333726464047 LTS-025 chr12 32943943 33592681 648739 * c(SYT10, PKP2) 0.321004119533621 4 0.239520875916902 1.18666032008644 210 0.400945688454182 4 2 2 -6.76037500154736 LTS-025 chr12 33592682 34182671 589990 * c(SYT10, ALG10) NA 0 NA 1.14733908037674 65 0.332465142765142 4 NA NA -5.78189033509318 LTS-025 chr12 38710341 39695474 985134 * c(ALG10B, CPNE8, KIF21A) 0 1 NA 1.05963422873923 227 0.339474940510333 3 3 0 -5.83568704103673 LTS-025 chr12 39695475 40151415 455941 * c(SLC2A13, ABCD2, C12orf40, KIF21A) 0.224451956018235 9 0.23759986204635 1.03665371772393 469 0.313564678613654 4 3 1 -6.83406216400721 LTS-025 chr12 40151416 40151891 476 * c(SLC2A13, C12orf40) 0.407 1 NA 1.1640604176618 8 0.442997077545988 4 4 0 -5.76441527911376 LTS-025 chr12 40151892 40714785 562894 * c(SLC2A13, LRRK2, C12orf40) 0.405469356437813 11 0.191600673750951 0.993848353306822 334 0.264608360698632 3 2 1 -6.83861870324115 LTS-025 chr12 40714786 40722122 7337 * LRRK2 0 1 NA 1.11870690988904 19 0.195292538102705 4 4 0 -5.76554696376171 LTS-025 chr12 40722123 40926052 203930 * LRRK2 0.168551914693943 11 0.245899905726626 1.09818651267788 513 0.379851353894353 4 3 1 -6.83388460758197 LTS-025 chr12 40926053 40933367 7315 * character(0) 0.486 1 NA 1.04489054703887 67 0.298911091035003 3 3 0 -5.76494723718885 LTS-025 chr12 40933368 41464003 530636 * CNTN1 0.349404265436013 11 0.192112183135508 1.16573570393301 301 0.458261019766015 4 2 2 -6.74400973746689 LTS-025 chr12 41464004 41831517 367514 * c(CNTN1, PDZRN4) 0 1 NA 1.10674021111822 61 0.480224951272981 4 4 0 -5.77596031983413 LTS-025 chr12 41831518 42478757 647240 * c(GXYLT1, PDZRN4) 0.178490130586801 13 0.132772602981805 1.02965803920674 178 0.414651802187171 4 3 1 -7.04632302599475 LTS-025 chr12 42478758 42481803 3046 * GXYLT1 0.327 1 NA 1.0352315545913 54 0.370509206804695 3 3 0 -5.76453097947314 LTS-025 chr12 42481804 47628795 5146992 * c(PCED1B-AS1, MIR4698, YAF2, PRICKLE1, ANO6, ARID2, GXYLT1, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, SLC38A2, SLC38A4, TWF1, RNY5, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, PCED1B, SCAF11) 0.301407636306678 46 0.210773643953667 1.03752017976753 2346 0.338967561202506 3 2 1 -6.9893688481025 LTS-025 chr12 47628796 47757917 129122 * PCED1B 0.449 1 NA 0.992198789499461 39 0.199853603640238 3 3 0 -5.76981951129919 LTS-025 chr12 47757918 48238092 480175 * c(RAPGEF3, HDAC7, SLC48A1, VDR, RPAP3, ENDOU) 0.450550440946524 14 0.0445904439572841 1.04591169519773 685 0.264579891533188 4 2 2 -8.39890211199112 LTS-025 chr12 48238093 48240567 2475 * VDR 0 1 NA 1.06012401105781 21 0.649177413567134 3 3 0 -5.76446005598808 LTS-025 chr12 48240568 48961580 721013 * c(C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, ANP32D, SENP1, H1FNT, OR8S1, CCDC184, LALBA, PFKM, VDR, TMEM106C) 0.0805622613916835 12 0.161412773141822 1.01740262464396 1125 0.361940259969068 3 3 0 -6.79947667659416 LTS-025 chr12 48961581 49047912 86332 * c(LALBA, KANSL2) 0.498 1 NA 1.03636946749742 43 0.149974002915131 3 3 0 -5.78573050263675 LTS-025 chr12 49047913 49359989 312077 * c(MIR4701, ADCY6, LINC00935, RND1, ARF3, FKBP11, KANSL2, SNORA2A, SNORA2B, SNORA2C, WNT10B, CACNB3, CCDC65, CCNT1, DDX23) 0.236708051866953 35 0.221976560197943 0.988465163429709 990 0.400307440231456 4 3 1 -6.79967397992158 LTS-025 chr12 49359990 49372479 12490 * c(WNT1, WNT10B) 0 1 NA 0.949606568885672 39 0.2095145954868 3 3 0 -5.76442383166969 LTS-025 chr12 49372480 49960162 587683 * c(TROAP, LOC100335030, TUBA1B, MCRS1, RHEBL1, DDN, KCNH3, C1QL4, DHH, PRKAG1, LMBR1L, PRPH, SPATS2, WNT1, TUBA1A, DNAJC22, KMT2D, TUBA1C) 0.0523181282977096 12 0.133846814295185 1.01282596118405 1586 0.304064993932815 3 3 0 -6.76300456873202 LTS-025 chr12 49960163 49997088 36926 * c(MCRS1, FAM186B) 0.454 1 NA 1.00438255070626 101 0.185551673569269 3 3 0 -5.767130828938 LTS-025 chr12 49997089 50260825 263737 * c(BCDIN3D-AS1, BCDIN3D, FAIM2, PRPF40B, NCKAP5L, TMBIM6, FAM186B, FMNL3) 0.334789968825122 11 0.214844764253804 1.04156926295047 691 0.294047908289426 3 2 1 -6.75206500270256 LTS-025 chr12 50260826 50261809 984 * FAIM2 0.456 1 NA 1.13355306511935 21 0.276187617390787 4 4 0 -5.76446742074015 LTS-025 chr12 50261810 50746917 485108 * c(MIR1293, FAM186A, FAIM2, GPD1, LOC283332, RACGAP1, AQP2, AQP5, AQP6, ASIC1, LIMA1, SMARCD1, COX14, CERS5) 0.467934802589348 24 0.0338350377952899 1.01251776693319 1111 0.242242889410309 4 2 2 -9.93645142980575 LTS-025 chr12 50746918 50747102 185 * FAM186A 0.015 1 NA 0.888819691361235 3 0.304399408672225 3 3 0 -5.76441403236585 LTS-025 chr12 50747103 51189754 442652 * c(LARP4, FAM186A, ATF1, DIP2B) 0.174433912994001 13 0.238354723802517 1.07590931902377 565 0.386070326348664 4 3 1 -6.85050064769032 LTS-025 chr12 51189755 51203371 13617 * ATF1 0.492 1 NA 1.00147335521629 9 0.22585780925175 3 3 0 -5.76502842271011 LTS-025 chr12 51203372 51739648 536277 * c(CELA1, METTL7A, LETMD1, TMPRSS12, ATF1, SLC11A2, BIN2, POU6F1, SMAGP, HIGD1C, TFCP2, CSRNP2, DAZAP2) 0.379625217089286 18 0.179438630796777 1.0140244832999 966 0.252876568295157 3 2 1 -6.80615437528279 LTS-025 chr12 51739649 51748345 8697 * c(GALNT6, CELA1) 0 1 NA 0.882570369500481 13 0.686340397343505 3 3 0 -5.76445586006707 LTS-025 chr12 51748346 52574271 825926 * c(GALNT6, KRT80, GRASP, NR4A1, ANKRD33, FIGNL2, ATG101, SCN8A, ACVR1B, ACVRL1, SLC4A8) 0.138038630536931 13 0.229899448477495 1.06648873157615 1044 0.40226148608701 3 3 0 -6.89764400566889 LTS-025 chr12 52574272 52600033 25762 * c(KRT80, C12orf80) 0.445 1 NA 1.12279908060963 31 0.283753906704194 4 4 0 -5.76616436904737 LTS-025 chr12 52600034 53038588 438555 * c(KRT71, KRT74, KRT72, C12orf80, LINC00592, KRT6C, KRT73, KRT2, KRT5, KRT6A, KRT6B, KRT7, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT75) 0.300519693572002 54 0.214884084592882 1.08298438882212 1082 0.538903990073272 3 2 1 -6.76222515844178 LTS-025 chr12 53038589 53041961 3373 * KRT2 0 1 NA 1.10864971859498 25 0.86084265887172 4 4 0 -5.76444215024294 LTS-025 chr12 53041962 53231799 189838 * c(KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT76) 0.210204782448824 16 0.240830472878053 1.05738467662924 460 0.431348785553769 4 3 1 -6.77764080178289 LTS-025 chr12 53231800 53295917 64118 * c(KRT78, KRT8) 0.443 1 NA 0.998879113978796 99 0.266264860395174 3 3 0 -5.76633334481823 LTS-025 chr12 53295918 53671549 375632 * c(EIF4B, TNS2, LOC283335, ZNF740, IGFBP6, ITGB7, KRT8, KRT18, CSAD, RARG, SOAT2, SPRYD3, MFSD5, ESPL1) 0.417505089344118 27 0.124172130322057 1.02785292440106 1025 1.60544074722508 4 2 2 -6.82832413972858 LTS-025 chr12 53671550 53676245 4696 * ESPL1 0 1 NA 1.16635064448064 19 0.898292779737572 4 4 0 -5.7644216978759 LTS-025 chr12 53676246 54370068 693823 * c(HOTAIR, LOC100652999, HOXC13-AS, ATF7, SP7, AMHR2, HOXC11, HOXC12, HOXC13, PCBP2, ATP5G2, PFDN5, PRR13, CALCOCO1, C12orf10, SP1, TARBP2, MAP3K12, AAAS, NPFF, ESPL1) 0.187002815917862 21 0.233269137427544 1.03710036761453 1315 0.347169058601115 4 3 1 -6.90170442627444 LTS-025 chr12 54370069 54385599 15531 * c(HOXC10, HOXC11, MIR196A2) 0.4 1 NA 0.978701075669062 71 0.25092652936434 3 3 0 -5.76463679036886 LTS-025 chr12 54385600 54449659 64060 * c(HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, MIR196A2, MIR615) 0.426579046404308 10 0.150552168883598 1.04364489113925 232 0.329481702477547 4 2 2 -6.83133165431048 LTS-025 chr12 54449660 54449668 9 * HOXC4 0 1 NA 2.789 1 NA NA NA NA NA LTS-025 chr12 54449669 54937161 487493 * c(LOC100240734, LOC100240735, MIR3198-2, GTSF1, COPZ1, CBX5, SMUG1, ZNF385A, NCKAP1L, HNRNPA1, HOXC4, ITGA5, LOC400043, FLJ12825, MIR148B, NFE2, GPR84) 0.122032643925271 17 0.207673651646605 1.02614929825636 997 0.372086915040481 3 3 0 -6.85126234602613 LTS-025 chr12 54937162 54955461 18300 * PDE1B 0.436 1 NA 1.01800584040909 25 0.244843296824724 3 3 0 -5.76553883386333 LTS-025 chr12 54955462 56031611 1076150 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.334811944250588 9 0.236933066028737 1.02799712932818 847 0.346736856095664 3 2 1 -6.77482470794296 LTS-025 chr12 56031612 56078413 46802 * c(OR10P1, METTL7B, ITGA7) 0 1 NA 1.01148850267569 35 0.295684072259963 3 3 0 -5.76607875071323 LTS-025 chr12 56078414 56216241 137828 * c(BLOC1S1-RDH5, GDF11, BLOC1S1, ORMDL2, ITGA7, RDH5, SARNP, DNAJC14, CD63) 0.0350097169212586 11 0.150755672288882 1.01957256224965 521 0.567346140397351 3 3 0 -6.73468110433211 LTS-025 chr12 56216242 56346730 130489 * c(DGKA, MMP19, PYM1, DNAJC14) 0.403 1 NA 1.02187746670248 293 0.23527388377814 3 3 0 -5.77397659959367 LTS-025 chr12 56346731 56552259 205529 * c(CDK2, MYL6B, DGKA, ERBB3, ESYT1, MYL6, PA2G4, RAB5B, RPL41, RPS26, IKZF4, PMEL, SUOX, ZC3H10) 0.26599790463353 13 0.237773890654384 1.01658882013094 1039 0.28952808774003 3 2 1 -6.78513646380963 LTS-025 chr12 56552260 56565749 13490 * c(MYL6, SMARCC2) 0 1 NA 1.08536128091161 111 0.319584469409315 4 4 0 -5.76573915919686 LTS-025 chr12 56565750 56811428 245679 * c(RNF41, CNPY2, CS, ANKRD52, SLC39A5, APOF, IL23A, SMARCC2, STAT2, NABP2, TIMELESS, COQ10A, PAN2) 0.0594109676016798 10 0.14799459449588 1.02054779525943 1030 0.443187926424289 3 3 0 -6.75361144103157 LTS-025 chr12 56811429 56814570 3142 * TIMELESS 0.495 1 NA 0.794528312790239 19 0.524591481271115 3 3 0 -5.76460651130909 LTS-025 chr12 56814571 56867274 52704 * c(GLS2, SPRYD4, MIP, TIMELESS) 0.4128453758033 9 0.155479187603286 0.994411534012357 231 0.285448510745535 4 2 2 -6.79985405694302 LTS-025 chr12 56867275 56868502 1228 * GLS2 0 1 NA 1.45321100501305 7 2.12754920484759 5 5 0 -5.76441056320402 LTS-025 chr12 56868503 57845706 977204 * c(MIR1228, PTGES3, BAZ2A, NXPH4, GPR182, SDR9C7, R3HDM2, NEMP1, STAC3, SNORD59A, GLS2, INHBC, LRP1, MYO1A, NAB2, NACA, ATP5B, PRIM1, NDUFA4L2, RBMS2, SHMT2, STAT6, TAC3, SNORD59B, RDH16, HSD17B6, ZBTB39) 0.291285755355901 43 0.224253719917887 1.04412522407913 2460 0.391806900025586 3 2 1 -6.79190966496813 LTS-025 chr12 57845707 57848839 3133 * character(0) 0 1 NA 1.09975942092424 15 0.273148014994138 4 4 0 -5.7647510265291 LTS-025 chr12 57848840 57976840 128001 * c(DCTN2, MBD6, DDIT3, GLI1, KIF5A, MARS, ARHGAP9, INHBE) 0 9 0 1.02258987341264 745 0.378222920639658 0 0 0 -Inf LTS-025 chr12 57976841 57977003 163 * KIF5A 0.473 1 NA 1.01496061569292 5 0.222055848830874 3 3 0 -5.76442137567481 LTS-025 chr12 57977004 58165998 188995 * c(AGAP2-AS1, CDK4, OS9, ARHGEF25, AGAP2, CYP27B1, DTX3, B4GALNT1, KIF5A, METTL1, TSPAN31, SLC26A10, PIP4K2C, MARCH9) 0.358203728881303 22 0.198970336495657 1.02569793218564 981 0.26195174739589 3 2 1 -6.75713619295606 LTS-025 chr12 58165999 58166108 110 * character(0) NA 0 NA 0.646 1 NA NA NA NA NA LTS-025 chr12 58166109 58217705 51597 * c(TSFM, CTDSP2, AVIL, METTL21B) 0.318893293522275 14 0.137214859189585 0.567401370959099 343 0.165165710059469 2 1 1 -6.8296007064621 LTS-025 chr12 58217706 58217762 57 * CTDSP2 0.195 1 NA 0.756512607171077 2 0.221324422511389 2 2 0 -5.76442696357273 LTS-025 chr12 58217763 58240414 22652 * c(CTDSP2, MIR26A2) 0.3091435514677 6 0.0687333010022556 0.553540814811029 57 0.290587854836444 3 2 1 -6.83359203468041 LTS-025 chr12 58240415 62103858 3863444 * c(LOC100506844, CTDSP2, LRIG3, FAM19A2, ATP23, SLC16A7) 0 3 0 1.09920706022151 389 0.288867388248541 0 0 0 -Inf LTS-025 chr12 62103859 62114671 10813 * FAM19A2 0.482 1 NA 1.14493297365711 11 0.196636905811887 4 4 0 -5.76538124517726 LTS-025 chr12 62114672 63544227 1429556 * c(MON2, LINC01465, FAM19A2, MIRLET7I, AVPR1A, PPM1H, USP15) 0.331424560505276 11 0.209056451706232 1.05230023184419 729 0.308076228537483 3 2 1 -6.84363116328115 LTS-025 chr12 63544228 64118706 574479 * c(DPY19L2, AVPR1A) 0.339860336258078 11 0.117511082649487 1.54436905851437 120 0.474945610257723 5 3 2 -6.75085034931394 LTS-025 chr12 64118707 64173612 54906 * TMEM5 NA 0 NA 0.961 1 NA NA NA NA NA LTS-025 chr12 64173613 64540960 367348 * c(TMEM5, SRGAP1) 0.464834857880544 4 0.0199060292373944 1.08074764359721 292 0.304990703198967 4 2 2 -11.9924822142976 LTS-025 chr12 64540961 64541522 562 * SRGAP1 0 1 NA 1.41901675712769 15 0.734991914435604 5 5 0 -5.76441365288147 LTS-025 chr12 64541523 65856975 1315453 * c(MIR548Z, WIF1, XPOT, C12orf56, C12orf66, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, TBK1, FLJ41278, SRGAP1, MIR548C) 0.180199129385873 21 0.222748812192867 1.05703825933909 1121 0.547329314219012 4 3 1 -6.88023705951095 LTS-025 chr12 65856976 65860289 3314 * MSRB3 0.425 1 NA 1.06476115410115 61 0.285806075107416 3 3 0 -5.76478076651117 LTS-025 chr12 65860290 66347870 487581 * c(RPSAP52, MSRB3, HMGA2) 0.396165785614184 10 0.147762421925648 1.07527795057623 275 0.328250946980755 4 2 2 -6.8060130063605 LTS-025 chr12 66347871 66348560 690 * HMGA2 0 1 NA 1.15704265086802 15 0.764089529782871 4 4 0 -5.7644131785182 LTS-025 chr12 66348561 66646512 297952 * c(IRAK3, TMBIM4, HMGA2, LLPH) 0.206474203349745 14 0.235916089105642 1.03927428685894 452 0.480683629529142 4 3 1 -6.79157138460897 LTS-025 chr12 66646513 66647206 694 * IRAK3 0.475 1 NA 1.10231047319151 15 0.258603907457681 4 4 0 -5.76449096978028 LTS-025 chr12 66647207 68058037 1410831 * c(IRAK3, GRIP1, CAND1, DYRK2, HELB) 0.386772971866983 30 0.176865882040277 1.07962388677485 738 0.307470175991108 4 2 2 -6.89797685706865 LTS-025 chr12 68058038 68548628 490591 * IFNG 0 1 NA 1.17112715352175 29 0.37366897774114 4 4 0 -5.77043031313007 LTS-025 chr12 68548629 68726169 177541 * c(IFNG, IL22, IL26, MDM1) 0.248575361017336 7 0.224620314562788 0.943872631073086 232 0.31004804747217 3 2 1 -6.81116058794102 LTS-025 chr12 68726170 68868709 142540 * character(0) NA 0 NA 0.37 1 NA NA NA NA NA LTS-025 chr12 68868710 69136487 267778 * c(SNORA70G, LOC100507250, NUP107, RAP1B) 0.149651705756869 7 0.077780521493556 0.532888247964064 182 0.140646855549053 2 2 0 -7.87946321445517 LTS-025 chr12 69136488 69161619 25132 * SLC35E3 0 1 NA 0.629358503287553 80 0.26897221634317 2 2 0 -5.76456641547925 LTS-025 chr12 69161620 75881519 6719900 * c(LOC100130075, MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, GLIPR1, CPSF6, RAB3IP, TPH2, CPM, GLIPR1L2, BEST3, ZFC3H1, RAB21, GLIPR1L1, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, MDM2, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.073627695959707 77 0.0659385212535064 0.608568704814706 3626 0.235029011847613 2 2 0 -7.07074343377196 LTS-025 chr12 75881520 75884173 2654 * GLIPR1 NA 0 NA 1.005 1 NA NA NA NA NA LTS-025 chr12 75884174 75897871 13698 * c(GLIPR1, KRR1) 0.0242101111101073 2 0.0289913780286484 1.01443011215358 149 0.274417503066913 4 4 0 -6.74757081331959 LTS-025 chr12 75897872 75898964 1093 * KRR1 NA 0 NA 0.438 1 NA NA NA NA NA LTS-025 chr12 75898965 78225211 2326247 * c(KRR1, OSBPL8, E2F7, CSRP2, PHLDA1, ZDHHC17, NAP1L1, BBS10, NAV3) 0.0886393202273288 13 0.0471999293784782 0.559002101269928 1000 0.177895629904557 2 2 0 -7.93281928237557 LTS-025 chr12 78225212 89741255 11516044 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.0518964910693682 49 0.0660225816862459 0.632396999270946 3461 0.257047298319219 2 2 0 -6.7864771768121 LTS-025 chr12 89741256 89743126 1871 * DUSP6 NA 0 NA 0.21955762054704 40 0.169814753896785 1 NA NA -5.77312080513664 LTS-025 chr12 89743127 121165051 31421925 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, PXN-AS1, NRAV, POC1B-GALNT4, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, KERA, PRDM4, CIT, PWP1, FICD, NUDT4, SDSL, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, NA NA NA NA NA NA NA NA NA LTS-025 SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, COX6A1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DCN, EPYC, DTX1, DUSP6, PLBD2, FAM71C, RMST, CCER1, ELK3, ALDH2, RPH3A, FBXO21, UHRF1BP1L, CUX2, KIAA1033, MED13L, SIRT4, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, TBX5-AS1, LINC01619, FBXW8, HSPB8, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, HECTD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 KSR2, GATC, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, ACADS, C12orf42, C12orf75, CFAP73, TMEM233, ARL1, C12orf76, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MSI1, MVK, MYBPC1, MYL2, NFYB, NOS1, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, TAOK3, POP5, ANAPC7, TRIAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, RPL6, RPLP0, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643339, LOC643711, LOC643770, SUDS3, ACTR6, SNRPF, SNORA53, TBX5, TBX3, MIR620, BTG1, TDG, TMPO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, COQ5, HVCN1, RASAL1, SRRM4, UNC119B, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DYNLL1, SRSF9, GALNT4, CRADD, HRK, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, BICDL1, CABP1, WSCD2, SART3, MLEC, GIT2, NUAK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 RBM19, RNF10, NR1H4) 0.0721185245902734 556 0.067669977924063 0.589090934524208 24831 0.293673413511795 2 2 0 -8.2768479634813 LTS-025 NA NA NA NA LTS-025 chr12 121165052 121174774 9723 * ACADS NA 0 NA 0.154 1 NA NA NA NA NA LTS-025 chr12 121174775 121177835 3061 * ACADS 0.486 1 NA 0.142874420887582 52 0.0318784633465819 0 0 0 -6.95155848299737 LTS-025 chr12 121177836 121200264 22429 * character(0) NA 0 NA 0.592 1 NA NA NA NA NA LTS-025 chr12 121200265 125834214 4633950 * c(MIR4304, MIR3908, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MIR5188, MPHOSPH9, CAMKK2, TMED2, SNRNP35, TMEM132B, SPPL3, BRI3BP, RFLNA, ZNF664, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, RILPL1, IL31, KMT5A, P2RX4, P2RX7, ARL6IP4, ANAPC5, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, DHX37, DDX55, BCL7A, CLIP1, NA NA NA NA NA NA NA NA NA LTS-025 C12orf43, VPS33A, RSRC2, AACS, HNF1A, UBC, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CCDC92, CDK2AP1, CCDC62, KDM2B, ORAI1, DENR, OASL, HCAR3, HIP1R, C12orf65, SCARB1, NCOR2, KNTC1) 0.0809373628326083 221 0.0749197187220672 0.579643011023151 7274 0.239369342156481 2 2 0 -7.36881018756675 LTS-025 NA NA NA NA LTS-025 chr12 125834215 131361241 5527027 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, RAN, TMEM132C, PIWIL1) 0.0520941683358561 46 0.0835427658137242 0.655059555362902 1299 0.423481149414324 2 2 0 -6.73647206290385 LTS-025 chr12 131361242 131490619 129378 * ADGRD1 NA 0 NA 0.618616458191084 105 0.172994501172429 2 NA NA -5.76956500960622 LTS-025 chr12 131490620 131498769 8150 * ADGRD1 NA 0 NA 1.234 1 NA NA NA NA NA LTS-025 chr12 131498770 131622735 123966 * ADGRD1 0.442 1 NA 1.17843094735312 59 0.237209155637826 4 4 0 -5.76735963838152 LTS-025 chr12 131622736 132549396 926661 * c(LINC01257, ADGRD1, MMP17, EP400, SFSWAP, SNORA49, PUS1, ULK1) 0.380339709434432 17 0.186312158991933 1.12609992886665 782 0.371428444457299 4 2 2 -6.76989947478952 LTS-025 chr12 132549397 132551254 1858 * EP400 NA 0 NA 0.884 1 NA NA NA NA NA LTS-025 chr12 132551255 132824450 273196 * c(DDX51, EP400NL, GALNT9, EP400, NOC4L) 0.46442396038753 4 0.0177834192437787 1.01964985705439 326 0.263582609112083 4 2 2 -12.5824020109394 LTS-025 chr12 132824451 132839112 14662 * GALNT9 0 1 NA 1.28634968105596 15 0.703974519289955 4 4 0 -5.76443907141702 LTS-025 chr12 132839113 133308345 469233 * c(LOC100130238, LRCOL1, PGAM5, P2RX2, ANKLE2, GALNT9, POLE, FBRSL1, PXMP2) 0.112803333725841 11 0.219886540991237 1.05576040994727 740 0.525590053356742 3 3 0 -6.81977291674945 LTS-025 chr12 133308346 133324719 16374 * ANKLE2 0.473 1 NA 0.983230402748645 49 0.190538482373787 3 3 0 -5.76492809589438 LTS-025 chr12 133324720 133618022 293303 * c(ZNF605, ANKLE2, GOLGA3, CHFR) 0.350634011722767 12 0.172466663445432 1.01795122222287 746 0.348471362485754 3 2 1 -6.75038337911718 LTS-025 chr12 133618023 133635639 17617 * character(0) 0 1 NA 0.886519232150261 53 0.256418710612925 3 3 0 -5.76498469680399 LTS-025 chr12 133635640 133812423 176784 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0 11 0 0.991544449305337 571 0.367257212142037 0 0 0 -Inf LTS-025 chr12 133812424 133812708 285 * character(0) NA 0 NA 0.697175520575939 7 0.0883003532323194 2 NA NA -5.76453291034395 LTS-025 chr13 19271620 19751565 479946 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0 1 NA 0.559229132620204 24 0.204552387783243 2 2 0 -5.90673044153456 LTS-025 chr13 19751566 25486911 5735346 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.0668768467484342 77 0.0673151680704889 0.600346320359645 3316 0.441203897107059 2 2 0 -6.868543865222 LTS-025 chr13 25486912 25670826 183915 * c(PABPC3, CENPJ, TPTE2P1) NA 0 NA 0.528316372834743 60 0.15751119680405 2 NA NA -5.94127925713488 LTS-025 chr13 25670827 25670851 25 * PABPC3 0.462 1 NA 1.186 1 NA NA NA NA NA LTS-025 chr13 25670852 25671759 908 * PABPC3 0.426285481663727 15 0.0752981375852652 1.1789334974022 45 0.63329615361363 13 7 6 -7.06596599769354 LTS-025 chr13 25671760 25671786 27 * PABPC3 0.242 1 NA 3.411 1 NA NA NA NA NA LTS-025 chr13 25671787 25671821 35 * PABPC3 0.23 1 NA 1.33203410090905 3 1.69304341350126 4 4 0 -5.7644101749783 LTS-025 chr13 25671822 33344864 7673043 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, PABPC3, POLR1D, POMP, ATP8A2, UBL3, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, NA NA NA NA NA NA NA NA NA LTS-025 BRCA2, KATNAL1, MEDAG, N4BP2L1, MTMR6, NUP58) 0.0788221507712129 99 0.0670025721237761 0.590290616372195 4899 0.223045638832915 2 2 0 -7.53298278484888 LTS-025 NA NA NA NA LTS-025 chr13 33344865 33347323 2459 * PDS5B NA 0 NA 0.711 1 NA NA NA NA NA LTS-025 chr13 33347324 41185340 7838017 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.0535305865810327 61 0.057920800457893 0.642174887806853 3112 0.277932711257063 2 2 0 -6.73881407410844 LTS-025 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 0.476 1 NA NA NA NA NA LTS-025 chr13 41239781 42457624 1217844 * c(MIR320D1, OR7E37P, TPTE2P5, MIR5006, SLC25A15, MRPS31, WBP4, ELF1, VWA8, FOXO1, SUGT1P3, RGCC, MIR621, NAA16, KBTBD7, KBTBD6, MTRF1) 0.0966437661016424 10 0.0626595740667156 0.570256640046235 899 0.153044550480324 2 2 0 -7.51045652806703 LTS-025 chr13 42457625 42460008 2384 * VWA8 NA 0 NA 0.861 1 NA NA NA NA NA LTS-025 chr13 42460009 42623128 163120 * c(VWA8-AS1, DGKH, VWA8) 0 1 NA 1.03642575323128 42 0.241516376833426 3 3 0 -5.7799761505623 LTS-025 chr13 42623129 42701565 78437 * DGKH NA 0 NA 0.717 1 NA NA NA NA NA LTS-025 chr13 42701566 49033997 6332432 * c(TPT1-AS1, CPB2-AS1, LINC00563, LINC00441, MED4-AS1, SMIM2-IT1, LPAR6, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ESD, ERICH6B, SPERT, ZC3H13, LRCH1, SLC25A30, NUFIP1, SIAH3, MED4, DNAJC15, GTF2F2, HTR2A, KCTD4, SERP2, LCP1, ENOX1, NUDT15, GPALPP1, RB1, TSC22D1-AS1, SNORA31, TPT1, RUBCNL, COG3, TNFSF11, SUCLA2, TSC22D1, EPSTI1, ITM2B) 0.0768342882025479 53 0.0556481273573016 0.58304290326164 3049 0.25667102152101 2 2 0 -7.4372633331408 LTS-025 chr13 49033998 49037871 3874 * RB1 NA 0 NA 0.185 1 NA NA NA NA NA LTS-025 chr13 49037872 49056133 18262 * RB1 NA 0 NA 0.148327748093865 63 0.0852921367531022 1 NA NA -6.7224697196844 LTS-025 chr13 49056134 49063059 6926 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-025 chr13 49063060 52440204 3377145 * c(LINC00462, MIR3613, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, TRIM13, DLEU1, RCBTB2, ARL11, WDFY2, ST13P4, DLEU7, FAM124A, CTAGE10P, FNDC3A, INTS6, KCNRG, LINC00282, MLNR, GUCY1B2, KPNA3, MIR16-1, PHF11, RCBTB1, CYSLTR2, SPRYD7, LINC00371, SERPINE3, RNASEH2B, DHRS12, CDADC1, CAB39L, CCDC70, SETDB2, EBPL, DLEU2) 0.100476298085242 44 0.0762938294646187 0.566157544326726 2031 0.174319712592244 2 2 0 -7.98503811657817 LTS-025 chr13 52440205 52440263 59 * CCDC70 NA 0 NA 0.878 1 NA NA NA NA NA LTS-025 chr13 52440264 114773106 62332843 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-025 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, CCDC70, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.0677245803265821 317 0.0673168899347464 0.616476524330011 14287 0.239219453924329 2 2 0 -7.9986075974183 LTS-025 NA NA NA NA LTS-025 chr13 114773107 114774832 1726 * RASA3 NA 0 NA 0.55 1 NA NA NA NA NA LTS-025 chr13 114774833 115064482 289650 * c(RASA3, UPF3A, CDC16) 0.115514228388559 11 0.0870257015327813 0.530808803091917 230 0.216049957656861 2 2 0 -7.19992421014609 LTS-025 chr13 115064483 115092817 28335 * c(CHAMP1, UPF3A) NA 0 NA 0.512708700917142 87 0.0802537192243767 2 NA NA -5.90366003989139 LTS-025 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.317 1 NA 1.53609148833415 11 0.393351103861539 5 5 0 -5.76446102478344 LTS-025 chr14 20201973 20404767 202795 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.336221822189906 9 0.0248718939992738 1.66408233096678 196 0.386272532496929 6 4 2 -6.82477006403983 LTS-025 chr14 20404768 20404847 80 * OR4K1 NA 0 NA 1.282 1 NA NA NA NA NA LTS-025 chr14 20404848 20482636 77789 * c(OR4K14, OR4K15) 0.374069283449707 5 0.209181022083745 1.19640746828059 58 0.98332376096318 4 2 2 -6.73351771058858 LTS-025 chr14 20482637 20502921 20285 * c(OR4K14, OR4K13) 0.462 1 NA 0.974039973567733 37 0.323006845007845 3 3 0 -5.7645478654862 LTS-025 chr14 20502922 20755287 252366 * c(OR4L1, OR11H6, OR4K17, OR4N5, OR11G2, OR11H4) 0.467901765488019 20 0.0193920086633644 1.13008198829065 202 1.10392970570288 4 2 2 -12.2384240384929 LTS-025 chr14 20755288 20756454 1167 * character(0) 0 1 NA 1.16702025241595 23 0.73930513792109 4 4 0 -5.76441429017133 LTS-025 chr14 20756455 20835047 78593 * c(SNORD126, PARP2, CCNB1IP1, TEP1, RPPH1, TTC5) 0.351757430758183 12 0.213444105947286 1.01167241762182 234 0.380427364884608 3 2 1 -6.74086954470171 LTS-025 chr14 20835048 20837033 1986 * TEP1 0.463 1 NA 1.11255404588809 29 0.329235923166729 4 4 0 -5.76453074802436 LTS-025 chr14 20837034 20897882 60849 * c(KLHL33, TEP1) 0.446331610136183 22 0.103435112562526 1.03212647448138 336 0.337149138677659 4 2 2 -7.06588460593912 LTS-025 chr14 20897883 20898058 176 * KLHL33 0.421 1 NA 1.1452263462335 3 0.82100994715858 4 4 0 -5.76441103037589 LTS-025 chr14 20898059 21051304 153246 * c(RNASE11, KLHL33, APEX1, RNASE10, RNASE9, PNP, OSGEP, TMEM55B) 0.177518094332126 9 0.230912020282858 1.05990434073405 335 0.476657897750649 5 4 1 -6.80394523414269 LTS-025 chr14 21051305 21109278 57974 * c(RNASE11, OR6S1, RNASE12) 0.478 1 NA 1.02233967859934 67 0.256167104163553 3 3 0 -5.76803837945627 LTS-025 chr14 21109279 21511497 402219 * c(EDDM3A, TPPP2, ANG, SLC39A2, OR6S1, RNASE13, NDRG2, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, RNASE7) 0.454222240497412 22 0.0340496518026071 1.04132478821507 508 0.376370943211247 4 2 2 -9.24189539880026 LTS-025 chr14 21511498 21556050 44553 * c(RNASE8, ARHGEF40, NDRG2, RNASE7) 0 1 NA 1.055387195724 181 0.26462569683037 3 3 0 -5.76941687098392 LTS-025 chr14 21556051 22466239 910189 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, ARHGEF40, METTL3, RPGRIP1, CHD8, SALL2, TMEM253, SNORD9, RAB2B, TOX4) 0.389535391438631 48 0.152350972119228 1.0373189618416 1544 0.353305661371643 3 2 1 -6.86395473152125 LTS-025 chr14 22466240 22991095 524856 * character(0) 0.360968512908178 16 0.185362156781439 1.27097087031754 643 0.386131006855341 4 2 2 -6.73569504443967 LTS-025 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.944 1 NA NA NA NA NA LTS-025 chr14 22992444 23018665 26222 * character(0) 0.361264274436875 5 0.19999324988609 1.03114494925139 124 0.267768494096359 4 2 2 -6.7409579612818 LTS-025 chr14 23018666 23020638 1973 * character(0) 0.399 1 NA 0.960927804726232 9 0.19177069640589 3 3 0 -5.76442406613077 LTS-025 chr14 23020639 23080132 59494 * c(DAD1, ABHD4) 0.255249137757335 9 0.213823785185632 0.944531200572302 127 0.486272303761816 4 3 1 -6.74490402258283 LTS-025 chr14 23080133 23240328 160196 * c(OXA1L, ABHD4) 0.47 1 NA 1.03729609259092 103 0.197360676013035 3 3 0 -5.78767299916767 LTS-025 chr14 23240329 23312594 72266 * c(MRPL52, MMP14, OXA1L, SLC7A7) 0.465428433482307 11 0.0356153695116946 0.978587327617229 163 0.263659152033662 4 2 2 -9.49623946942878 LTS-025 chr14 23312595 23371055 58461 * c(REM2, LRP10, MMP14, RBM23) 0.47 1 NA 1.0069937110751 281 0.292581828876494 3 3 0 -5.76628390016368 LTS-025 chr14 23371056 23497040 125985 * c(MIR4707, PRMT5, HAUS4, RBM23, PSMB5, C14orf93, AJUBA) 0.025 1 NA 0.965418373420593 426 0.227031430253864 3 3 0 -5.7653614596405 LTS-025 chr14 23497041 23502626 5586 * PSMB5 NA 0 NA 1.359 1 NA NA NA NA NA LTS-025 chr14 23502627 23594846 92220 * c(CEBPE, PSMB11, ACIN1, SLC7A8, C14orf119, PSMB5, CDH24) 0.222163826527001 8 0.246298744269173 1.08013584553502 420 0.30320457029894 4 3 1 -6.76115736887444 LTS-025 chr14 23594847 23595423 577 * SLC7A8 0.46 1 NA 1.06081105998918 13 0.307284738079213 3 3 0 -5.76446257525316 LTS-025 chr14 23595424 23794066 198643 * c(BCL2L2-PABPN1, SLC7A8, HOMEZ, BCL2L2, PABPN1, PPP1R3E) 0.392663431283898 9 0.153313766867529 1.03988303790106 417 0.371149637591276 4 2 2 -6.7735840429527 LTS-025 chr14 23794067 23816673 22607 * c(BCL2L2-PABPN1, SLC22A17, PABPN1) 0 1 NA 1.19376263605466 55 0.455960159078254 4 4 0 -5.76448698806635 LTS-025 chr14 23816674 23990316 173643 * c(MIR208B, EFS, CMTM5, NGDN, MIR208A, MYH6, MYH7, SLC22A17, IL25, THTPA, ZFHX2) 0 9 0 1.1131476417392 668 0.567547594797851 0 0 0 -Inf LTS-025 chr14 23990317 23990325 9 * c(THTPA, ZFHX2) NA 0 NA 0.775 1 NA NA NA NA NA LTS-025 chr14 23990326 23994762 4437 * c(THTPA, ZFHX2) 0.0355428181909082 6 0.0485238772839379 0.673199878620751 92 0.619812105196188 3 3 0 -6.73380873656386 LTS-025 chr14 23994763 23996772 2010 * c(THTPA, ZFHX2) 0.104 1 NA 0.638554754463216 41 0.179158047816895 2 2 0 -5.76441636168044 LTS-025 chr14 23996773 24004028 7256 * c(THTPA, ZFHX2) 0.0778122828315252 4 0.0513314393589997 0.691888700561965 112 0.521299793383543 1 1 0 -6.76249115020618 LTS-025 chr14 24004029 24033933 29905 * c(THTPA, ZFHX2, AP1G2) 0.233700080635995 7 0.264608155940961 1.04807141668169 121 0.325702693403598 4 3 1 -6.74547340805977 LTS-025 chr14 24033934 24429093 395160 * c(DHRS2, DHRS4, DHRS4L2, DHRS4-AS1, JPH4, AP1G2) 0.379 1 NA 1.04991998326282 219 0.303303596959023 3 3 0 -5.79508718276931 LTS-025 chr14 24429094 24526478 97385 * c(DHRS4, DHRS4L2, DHRS4L1, CARMIL3) 0.395241063493259 10 0.148791278119534 1.05509166638614 214 0.308179950025954 4 2 2 -6.76775011557553 LTS-025 chr14 24526479 24546952 20474 * c(CARMIL3, CPNE6) 0 1 NA 1.05486878641284 205 0.283315080459685 3 3 0 -5.76640117098208 LTS-025 chr14 24546953 24594147 47195 * c(NRL, PCK2, DCAF11, CPNE6) 0.269384230382175 9 0.248730498956423 1.02212873503144 267 0.403734580371834 4 3 1 -6.73954272670695 LTS-025 chr14 24594148 24601318 7171 * c(FITM1, DCAF11) 0.471 1 NA 0.976278938748079 22 0.376584309848728 3 3 0 -5.76445089925739 LTS-025 chr14 24601319 24702789 101471 * c(NEDD8-MDP1, IRF9, TM9SF1, MDP1, FITM1, TSSK4, CHMP4A, NEDD8, EMC9, GMPR2, RNF31, PSME1, PSME2, IPO4, REC8) 0.467302807590761 17 0.0315910216210053 1.01968845968583 785 0.247648873480058 4 2 2 -10.0246003005882 LTS-025 chr14 24702790 24706800 4011 * GMPR2 0 1 NA 1.11019379639745 27 0.270504087840575 4 4 0 -5.76478584874684 LTS-025 chr14 24706801 24760009 53209 * c(DHRS1, TINF2, GMPR2, RABGGTA, TGM1) 0.317508331004094 9 0.23145487921215 1.021536667568 267 0.337088500385535 3 2 1 -6.73670837927983 LTS-025 chr14 24760010 24760255 246 * DHRS1 0.468 1 NA 1.0099306561933 7 0.520875453534948 3 3 0 -5.76441283116757 LTS-025 chr14 24760256 25103414 343159 * c(RIPK3, DHRS1, CMA1, LTB4R, CTSG, NOP9, ADCY4, KHNYN, CIDEB, GZMH, GZMB, NFATC4, LTB4R2, SDR39U1, NYNRIN, CBLN3) 0.416279304991977 41 0.141699660911517 1.01842149756273 1251 0.284230909015273 4 2 2 -6.89435000153357 LTS-025 chr14 25103415 25103497 83 * GZMB 0 1 NA 4.431 1 NA NA NA NA NA LTS-025 chr14 25103498 31085525 5982028 * c(MIR4307, LINC00645, MIR548AI, FOXG1, STXBP6, LINC01551, NOVA1, G2E3, PRKD1) 0.075535258159532 9 0.199004047976696 1.10265119529206 596 0.42774496605322 4 4 0 -7.0105631459319 LTS-025 chr14 31085526 31359024 273499 * c(LOC100506071, COCH, SCFD1, G2E3) 0.48 1 NA 1.06330148853956 281 0.244833426041812 3 3 0 -5.80491060848049 LTS-025 chr14 31359025 35008625 3649601 * c(AP4S1, EGLN3, DTD2, COCH, SPTSSA, HECTD1, HEATR5A, GPR33, STRN3, ARHGAP5, EAPP, NPAS3, MIR624, NUBPL, ARHGAP5-AS1, AKAP6) 0.406788482731273 41 0.141091723322964 1.05143931941846 1902 0.319973776038813 3 2 1 -7.15682020293018 LTS-025 chr14 35008626 36003309 994684 * c(CFL2, BAZ1A, IGBP1P1, FAM177A1, NFKBIA, PPP2R3C, EAPP, PSMA6, SNX6, SRP54, INSM2, KIAA0391) 0.390143659582329 8 0.163392384854899 0.981547580248878 759 0.749374363741863 4 2 2 -6.7993485738746 LTS-025 chr14 36003310 36003523 214 * INSM2 0 1 NA 0.805469176948873 5 0.740408873528674 3 3 0 -5.76441578364143 LTS-025 chr14 36003524 36986733 983210 * c(PTCSC3, LINC00609, RALGAPA1, SFTA3, MBIP, NKX2-1, BRMS1L, INSM2) 0.252890089532728 6 0.245368022909805 1.01458380482918 594 0.342387417326279 3 2 1 -6.82022644958043 LTS-025 chr14 36986734 38681016 1694283 * c(SLC25A21-AS1, MIR4503, MIPOL1, SFTA3, NKX2-8, FOXA1, PAX9, SSTR1, NKX2-1, SLC25A21) 0.242946719197411 16 0.228819251812429 1.12516583131198 782 0.361817702599934 4 3 1 -6.8052500841842 LTS-025 chr14 38681017 38725285 44269 * c(CLEC14A, SSTR1) 0.453 1 NA 1.11388691629265 69 0.33859595823437 4 4 0 -5.76689453531136 LTS-025 chr14 38725286 39685650 960365 * c(SEC23A, TRAPPC6B, CLEC14A, LINC00639, PNN, GEMIN2) 0.443923129352964 10 0.0416040863377625 1.08466039073875 412 0.320573179275763 4 2 2 -8.34478968547221 LTS-025 chr14 39685651 39706480 20830 * NA 0 1 NA 1.1362025998043 28 0.182793519850871 4 4 0 -5.76703182188706 LTS-025 chr14 39706481 48143920 8437440 * c(SNORD127, LOC100288846, LINC00871, NA, C14orf28, RPL10L, LRFN5, MDGA2, FKBP3, FAM179B, FBXO33, MIA2, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB) 0.215270523314125 17 0.23924309259191 1.07105322441518 1383 0.412503286990501 4 3 1 -7.31030538770412 LTS-025 chr14 48143921 48144042 122 * MDGA2 NA 0 NA 0.819 1 NA NA NA NA NA LTS-025 chr14 48144043 50199412 2055370 * c(MIR548Y, LINC00648, LRR1, KLHDC1, MDGA2, MGAT2, POLE2, DNAAF2, RPL36AL, RPS29, NEMF) 0 3 0 0.938805731803895 353 0.288114856833475 0 0 0 -Inf LTS-025 chr14 50199413 50469628 270216 * c(KLHDC1, KLHDC2, LINC01588, ARF6, NEMF) 0.477 1 NA 1.01366469081049 339 0.331332079442582 3 3 0 -5.77253822780946 LTS-025 chr14 50469629 56116457 5646829 * c(KTN1-AS1, MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, LINC01599, NID2, ATG14, SAMD4A, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, TBPL2, KTN1, LGALS3, ATL1, NIN, C14orf166, GNG2, FBXO34, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, MAPK1IP1L, DLGAP5 NA NA NA NA NA NA NA NA NA LTS-025 ) 0.411021865598803 117 0.148676821426846 0.992205161319112 4770 0.35524676460973 3 2 1 -6.9795082930036 LTS-025 NA NA NA NA LTS-025 chr14 56116458 56958173 841716 * c(KTN1, PELI2, RPL13AP3, LINC00520) 0.359006371735683 6 0.181409389687157 1.09641535772812 286 0.634952214634567 4 2 2 -6.75244488780205 LTS-025 chr14 56958174 57115637 157464 * TMEM260 0 1 NA 1.10463565549892 125 0.357827973987141 4 4 0 -5.77363804030747 LTS-025 chr14 57115638 58056075 940438 * c(OTX2-AS1, EXOC5, NAA30, SLC35F4, OTX2, TMEM260, C14orf105, AP5M1) 0.0920668952537341 11 0.2002585147435 1.08049591686372 625 0.683745718599074 3 3 0 -6.80350179519888 LTS-025 chr14 58056076 58056257 182 * SLC35F4 0.462 1 NA 1.17568891503169 5 0.623222031061162 4 4 0 -5.76441082191339 LTS-025 chr14 58056258 59804999 1748742 * c(C14orf37, DAAM1, TIMM9, SLC35F4, PSMA3-AS1, TOMM20L, DACT1, ACTR10, PSMA3, ARID4A, KIAA0586) 0.374133938692236 21 0.217985626437463 1.00767755832577 882 0.305020808982434 3 2 1 -6.80952395445898 LTS-025 chr14 59805000 59927543 122544 * DAAM1 0 1 NA 1.07528241347947 107 0.237835383294448 3 3 0 -5.78740048484815 LTS-025 chr14 59927544 61184875 1257332 * c(L3HYPDH, C14orf39, LRRC9, SIX6, JKAMP, DHRS7, SIX4, PPM1A, RTN1, PCNX4, GPR135, SIX1, CCDC175) 0 8 0 1.05219792536122 1414 0.398648336658749 0 0 0 -Inf LTS-025 chr14 61184876 61186429 1554 * SIX4 NA 0 NA 0.555 1 NA NA NA NA NA LTS-025 chr14 61186430 61201707 15278 * c(MNAT1, SIX4) NA 0 NA 0.600843537693542 43 0.11863072607649 2 NA NA -5.76795059666223 LTS-025 chr14 61201708 61246654 44947 * MNAT1 NA 0 NA 1.101 1 NA NA NA NA NA LTS-025 chr14 61246655 61438303 191649 * c(MNAT1, TRMT5) 0.0398670950734281 2 0.0551543289325507 1.06353573564131 76 0.268008978639856 3 3 0 -6.76067735301724 LTS-025 chr14 61438304 61788875 350572 * c(SLC38A6, TMEM30B, PRKCH, TRMT5) 0.464 1 NA 1.03653064913347 322 0.220542313879788 3 3 0 -5.80445021916562 LTS-025 chr14 61788876 62463214 674339 * c(HIF1A-AS2, HIF1A, FLJ22447, PRKCH, SNAPC1, SYT16) 0.291441217238925 11 0.22485199172304 0.962655552593515 357 0.28512523767323 3 2 1 -6.75330757891352 LTS-025 chr14 62463215 63174041 710827 * c(KCNH5, LINC00643, SYT16) 0 1 NA 1.12324943968549 83 0.29989378176427 4 4 0 -5.80708971280882 LTS-025 chr14 63174042 64630177 1456136 * c(WDR89, GPHB5, SYNE2, KCNH5, PPP2R5E, RHOJ, SGPP1) 0.177682465779063 29 0.214678388164313 1.01706655903743 1030 0.430721793974945 4 3 1 -7.00163761559218 LTS-025 chr14 64630178 64637147 6970 * SYNE2 0.472 1 NA 0.921688422895932 29 0.278729480236141 3 3 0 -5.7644336061029 LTS-025 chr14 64637148 64855041 217894 * c(ESR2, SYNE2, TEX21P, MTHFD1) 0.355670391243531 17 0.18379678276004 1.05512480610356 370 0.303868613609198 3 2 1 -6.76301752952822 LTS-025 chr14 64855042 64867394 12353 * MTHFD1 0 1 NA 1.30025240487708 5 0.262090060856951 4 4 0 -5.76469213688014 LTS-025 chr14 64867395 65527963 660569 * c(CHURC1-FNTB, MIR4706, PPP1R36, ZBTB1, FNTB, PLEKHG3, GPX2, HSPA2, RAB15, MAX, MTHFD1, SPTB, ZBTB25, CHURC1, AKAP5) 0.228688835499091 19 0.236809161451512 1.03462710005014 1213 0.344571930417805 4 3 1 -6.84960890905986 LTS-025 chr14 65527964 65542477 14514 * c(CHURC1-FNTB, FNTB, MAX) 0.494 1 NA 1.05354489599572 40 0.306080980569957 3 3 0 -5.76559308244753 LTS-025 chr14 65542478 66424605 882128 * c(LOC100506321, MIR4708, FUT8, MAX, FUT8-AS1) 0.476783808015306 9 0.0127126358836832 0.992951977590004 205 0.258858481673277 4 2 2 -15.3171969130036 LTS-025 chr14 66424606 67452409 1027804 * c(GPHN, LINC00238) 0 1 NA 1.06687887303406 103 0.320416176816786 3 3 0 -5.85741281475703 LTS-025 chr14 67452410 68029278 576869 * c(GPHN, FAM71D, TMEM229B, EIF2S1, PLEK2, ATP6V1D, PLEKHH1, MPP5) 0.179016298819507 11 0.22898880480773 1.05226888206563 651 0.432007760033104 4 3 1 -6.86199335521884 LTS-025 chr14 68029279 68042255 12977 * PLEKHH1 0.48 1 NA 1.04490563186727 43 0.326326343732023 3 3 0 -5.76520982851826 LTS-025 chr14 68042256 68144191 101936 * c(VTI1B, ARG2, RDH11, PIGH, PLEKHH1) 0.37239066736031 10 0.192366230577684 1.039519338991 340 0.268427130467446 4 2 2 -6.75848871547479 LTS-025 chr14 68144192 68159604 15413 * RDH11 0 1 NA 0.988666064784508 41 0.3549764093845 3 3 0 -5.76458824943084 LTS-025 chr14 68159605 68247018 87414 * c(RDH12, ZFYVE26, RDH11) 0.143406530037351 9 0.227479364143456 1.01186856987523 229 0.446532359723334 5 4 1 -6.83869359035682 LTS-025 chr14 68247019 68249499 2481 * ZFYVE26 0.447 1 NA 1.02393919197246 13 0.528178922675805 3 3 0 -5.76444805932266 LTS-025 chr14 68249500 70263648 2014149 * c(LOC100289511, ACTN1-AS1, ERH, ZFYVE26, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, RAD51B, SRSF5, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.306048649582563 23 0.219070683631739 1.01893841941726 1365 0.350262203588869 3 2 1 -6.80179447716098 LTS-025 chr14 70263649 70346572 82924 * c(SMOC1, SLC10A1) 0 1 NA 1.30786276968894 17 0.83734225906945 4 4 0 -5.76464037139422 LTS-025 chr14 70346573 70515443 168871 * c(SMOC1, SLC8A3) 0.0853370342073446 11 0.213603072841363 1.14910203727955 215 0.666966072837958 3 3 0 -6.77461944941741 LTS-025 chr14 70515444 70924852 409409 * c(SYNJ2BP-COX16, ADAM21P1, COX16, SYNJ2BP, SLC8A3, ADAM21) 0.437 1 NA 1.08734563534297 220 0.356019850566663 4 4 0 -5.79584520092636 LTS-025 chr14 70924853 71580778 655926 * c(MED6, PCNX1, TTC9, ADAM20P1, MAP3K9, ADAM21, ADAM20) 0.338979282996925 26 0.200841675111363 1.01772138326738 754 0.397159876401141 3 2 1 -6.74941836699848 LTS-025 chr14 71580779 73008100 1427322 * c(LOC145474, PCNX1, SIPA1L1, SNORD56B, RGS6) 0 1 NA 1.02484328035583 361 0.327394464750704 3 3 0 -5.82186050782399 LTS-025 chr14 73008101 73742932 734832 * c(DCAF4, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, PAPLN, RGS6) 0.255808774539059 21 0.219329964513136 1.02651335460116 955 0.325932348719997 3 2 1 -6.83232476189375 LTS-025 chr14 73742933 73969610 226678 * c(HEATR4, NUMB) 0.437 1 NA 1.02459885122021 155 0.218277884485504 3 3 0 -5.78494748669305 LTS-025 chr14 73969611 73989983 20373 * HEATR4 NA 0 NA 0.994399123914733 65 0.308259021017166 3 NA NA -5.76479991055359 LTS-025 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.543 1 NA NA NA NA NA LTS-025 chr14 74003792 74042018 38227 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.710698774781241 79 0.398874497372711 2 NA NA -5.7656880970015 LTS-025 chr14 74042019 74042029 11 * c(ACOT2, ACOT1) NA 0 NA 1.305 1 NA NA NA NA NA LTS-025 chr14 74042030 74441684 399655 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, COQ6, ZNF410, ACOT1, ACOT6, DNAL1, ELMSAN1, PNMA1, ENTPD5) 0.397427502056309 31 0.142192577275532 0.963092362388741 907 0.312135924411795 3 2 1 -6.86571030243276 LTS-025 chr14 74441685 74454562 12878 * ENTPD5 0 1 NA 1.3367648627259 51 6.54835340207226 4 4 0 -5.76441125402709 LTS-025 chr14 74454563 74754568 300006 * c(VSX2, ALDH6A1, ABCD4, BBOF1, LIN52, ENTPD5) 0.1762600636538 10 0.236336953427845 1.03556108879615 388 0.415407362675831 4 3 1 -6.84697341229041 LTS-025 chr14 74754569 74759006 4438 * ABCD4 0.457 1 NA 0.995455648265743 27 0.258561872992215 3 3 0 -5.76453550315683 LTS-025 chr14 74759007 74966763 207757 * c(MIR4709, NPC2, ISCA2, LTBP2, VRTN, ABCD4, SYNDIG1L) 0.473060355592459 11 0.0221137554887943 1.07089949670928 355 0.380195512162844 4 2 2 -11.8531184778899 LTS-025 chr14 74966764 74967498 735 * LTBP2 0 1 NA 1.04002372174305 15 0.370202775837912 3 3 0 -5.76444220998259 LTS-025 chr14 74967499 75200697 233199 * c(LTBP2, FCF1, AREL1) 0.282082123083232 9 0.228664054892762 1.01135767137134 416 0.364086463648469 3 2 1 -6.7648948373712 LTS-025 chr14 75200698 75276079 75382 * c(FCF1, YLPM1) 0.365 1 NA 1.01506514716532 151 0.298119312974205 3 3 0 -5.76731864735457 LTS-025 chr14 75276080 76618849 1342770 * c(BATF, TMED10, C14orf1, IFT43, JDP2, DLST, TTLL5, FOS, MLH3, PROX2, PGF, FLVCR2, GPATCH2L, YLPM1, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1) 0.42356411687013 43 0.136727979656029 0.997391730558722 1837 0.259455682403996 3 2 1 -7.04081209569539 LTS-025 chr14 76618850 76638272 19423 * GPATCH2L 0 1 NA 1.1383082290156 47 0.506379730125852 4 4 0 -5.76471487022246 LTS-025 chr14 76638273 77724226 1085954 * c(LRRC74A, ESRRB, VASH1, ANGEL1, ZDHHC22, GPATCH2L, TMEM63C, IRF2BPL, CIPC) 0.274350639949068 21 0.216249965593171 1.07456558216944 895 0.372839491693052 4 3 1 -6.82427266070924 LTS-025 chr14 77724227 77725185 959 * TMEM63C 0 1 NA 1.04845690489732 21 0.455997587712918 3 3 0 -5.76444236851235 LTS-025 chr14 77725186 77742803 17618 * c(MIR1260A, POMT2, TMEM63C, NGB) 0 10 0 1.2463380464453 106 1.34336503566515 0 0 0 -Inf LTS-025 chr14 77742804 77787706 44903 * c(GSTZ1, POMT2) 0.474 1 NA 1.00710449590937 143 0.294965502542819 3 3 0 -5.76583088834702 LTS-025 chr14 77787707 78367045 579339 * c(AHSA1, NOXRED1, ISM2, SAMD15, SNW1, TMED8, C14orf178, GSTZ1, ADCK1, VIPAS39, SLIRP, ALKBH1, SPTLC2) 0.316364666633609 14 0.20882914042372 1.00459077158979 1041 0.337538868918987 3 2 1 -6.74860554627462 LTS-025 chr14 78367046 78374154 7109 * ADCK1 NA 0 NA 1.3 1 NA NA NA NA NA LTS-025 chr14 78374155 78399867 25713 * ADCK1 0.460789759685456 3 0.0133166562369588 1.29645936772205 29 0.282550671160765 4 2 2 -13.8227149973498 LTS-025 chr14 78399868 78400168 301 * ADCK1 0 1 NA 1.13745979123946 7 1.94982780680512 4 4 0 -5.76441045795139 LTS-025 chr14 78400169 81965641 3565473 * c(DIO2-AS1, CEP128, DIO2, GTF2A1, ADCK1, SEL1L, SNORA79, TSHR, STON2, NRXN3) 0.213074079555287 12 0.250036770023204 1.10564909763618 1164 0.346311554141931 4 3 1 -6.96994110070392 LTS-025 chr14 81965642 83159052 1193411 * SEL1L 0.5 1 NA 1.09561172496014 53 0.27196585176875 4 4 0 -5.90093729710671 LTS-025 chr14 83159053 88477413 5318361 * c(LINC00911, FLRT2, GALC, LOC283585, GPR65) 0.402248988542623 21 0.1413009116002 1.09803720052597 393 0.355226161002918 4 2 2 -7.09967865565331 LTS-025 chr14 88477414 88478411 998 * GPR65 0 1 NA 1.17299140161415 23 0.468547511732789 4 4 0 -5.76441746721281 LTS-025 chr14 88478412 88652483 174072 * c(LINC01146, KCNK10, GPR65) 0 4 0 1.24045272140082 79 0.624602081962549 0 0 0 -Inf LTS-025 chr14 88652484 88654261 1778 * KCNK10 NA 0 NA 0.959 1 NA NA NA NA NA LTS-025 chr14 88654262 89307741 653480 * c(PTPN21, TTC8, EML5, KCNK10, SPATA7, ZC3H14) 0.170571601857112 14 0.214822594837571 1.01680186652313 786 0.353512903402974 4 3 1 -6.96120711853831 LTS-025 chr14 89307742 89341313 33572 * TTC8 0.418 1 NA 1.02959247642874 43 0.228193247842741 3 3 0 -5.76752980522746 LTS-025 chr14 89341314 92555064 3213751 * c(SNORA11B, FBLN5, FOXN3, TTC8, TC2N, TTC7B, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NRDE2, PPP4R3A, TDP1, KCNK13, PSMC1, CATSPERB, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11) 0.28233359293463 40 0.217824580974974 0.984632473450369 2453 0.376201242556861 3 2 1 -6.78949314140779 LTS-025 chr14 92555065 92585304 30240 * c(ATXN3, NDUFB1) 0.488 1 NA 0.843801812583783 41 0.182671359577127 3 3 0 -5.77088359161402 LTS-025 chr14 92585305 93407583 822279 * c(CHGA, SLC24A4, ITPK1, NDUFB1, CPSF2, LGMN, RIN3, GOLGA5) 0.375174002673868 26 0.169391022375858 1.03730883448074 768 0.331668172740461 3 2 1 -6.81726822424883 LTS-025 chr14 93407584 93408180 597 * ITPK1 0 1 NA 1.10125143522608 11 0.633908883615992 4 4 0 -5.76442190057561 LTS-025 chr14 93408181 94254172 845992 * c(PRIMA1, TMEM251, ITPK1-AS1, COX8C, ITPK1, UBR7, BTBD7, UNC79, MOAP1, GON7) 0.0506091567317827 15 0.172772710587666 1.03708777240729 945 0.5428026627845 3 3 0 -6.75382661051468 LTS-025 chr14 94254173 94391300 137128 * c(PRIMA1, FAM181A-AS1, FAM181A) NA 0 NA 0.634 1 NA NA NA NA NA LTS-025 chr14 94391301 94400739 9439 * c(FAM181A-AS1, ASB2, FAM181A) 0 1 NA 0.528565255307786 53 0.240039309492417 2 2 0 -5.76841443768099 LTS-025 chr14 94400740 94431013 30274 * ASB2 NA 0 NA 0.547845771380311 97 0.123124594649323 2 NA NA -5.79728206846943 LTS-025 chr14 94431014 94464373 33360 * c(LINC00521, ASB2) NA 0 NA 0.766 1 NA NA NA NA NA LTS-025 chr14 94464374 94505283 40910 * c(LINC00521, OTUB2) 0.439 1 NA 0.954075426265779 37 0.303949132380856 3 3 0 -5.76445965562963 LTS-025 chr14 94505284 95080803 575520 * c(SERPINA3, IFI27L1, SERPINA12, SERPINA11, SERPINA9, IFI27, SERPINA5, SERPINA10, SERPINA1, SERPINA4, DDX24, PPP4R4, OTUB2, IFI27L2, SERPINA6) 0.397154996888956 35 0.152640633598037 1.064876446624 872 0.437290926097343 4 2 2 -6.79382311883714 LTS-025 chr14 95080804 95109832 29029 * c(SERPINA3, SERPINA13P) 0 1 NA 1.10377147172746 109 0.398078009436605 4 4 0 -5.76580577626587 LTS-025 chr14 95109833 96010866 901034 * c(MIR3173, GSC, SYNE3, DICER1, SNHG10, SERPINA13P, DICER1-AS1, GLRX5, LINC00341, CLMN) 0.328635993370984 20 0.210453995472945 1.06048923949457 692 0.340398722255506 3 2 1 -6.79884516651161 LTS-025 chr14 96010867 96103189 92323 * GLRX5 0 1 NA 0.981090249829356 11 1.18067999667372 3 3 0 -5.76447881545525 LTS-025 chr14 96103190 96558001 454812 * c(TUNAR, TCL6, C14orf132, TCL1A, TCL1B) 0.182069461241313 9 0.234630975031952 1.16276758692099 198 0.682289089691845 5 4 1 -6.78959454112082 LTS-025 chr14 96558002 96558235 234 * C14orf132 0.488 1 NA 0.862282909882128 5 0.269088832915824 3 3 0 -5.7644249188731 LTS-025 chr14 96558236 96751010 192775 * c(ATG2B, C14orf132, BDKRB1, BDKRB2) 0.459744200703505 12 0.028984191093307 1.12299904064227 351 0.54608713193914 4 2 2 -10.0180850165832 LTS-025 chr14 96751011 96751937 927 * ATG2B 0 1 NA 1.0983000429522 21 0.812847519819179 4 4 0 -5.76442177766239 LTS-025 chr14 96751938 98444253 1692316 * c(LOC100129345, PAPOLA, AK7, LINC01550, GSKIP, ATG2B, VRK1) 0.365826269171337 12 0.176460829201339 1.04149995677372 784 0.29848519026637 3 2 1 -6.8722352097111 LTS-025 chr14 98444254 99182740 738487 * c(C14orf177, LINC01550) 0 1 NA 1.15985414312563 11 0.895160036479004 4 4 0 -5.76661364321067 LTS-025 chr14 99182741 100142626 959886 * c(MIR5698, C14orf177, CCDC85C, BCL11B, SETD3, HHIPL1, CCNK) 0.0922214779093043 14 0.184092144271334 1.05887531590373 657 0.362211380718153 3 3 0 -6.84989653285185 LTS-025 chr14 100142627 100166300 23674 * c(CYP46A1, HHIPL1) 0.438 1 NA 1.06564700477603 109 0.238240444392229 3 3 0 -5.76827084459514 LTS-025 chr14 100166301 100772800 606500 * c(CYP46A1, SLC25A29, DEGS2, EML1, EVL, YY1) 0.473128568140788 9 0.0186413518823072 1.04949277688198 687 0.280154181893589 4 2 2 -12.8219307088065 LTS-025 chr14 100772801 100792539 19739 * c(SLC25A29, SLC25A47, MIR345) 0 1 NA 1.17967921221375 23 0.841159605671503 4 4 0 -5.76444584434404 LTS-025 chr14 100792540 101347396 554857 * c(MIR665, MIR2392, SLC25A47, LINC00523, RTL1, MIR337, MEG3, MIR431, MIR493, BEGAIN, WARS, MIR770, WDR25, DLK1) 0.318101878348321 11 0.215916566377765 1.05867383157528 384 0.359812198379513 3 2 1 -6.77030209360586 LTS-025 chr14 101347397 101349764 2368 * c(RTL1, MIR127, MIR433, MIR431) 0.46 1 NA 1.13578022615381 49 0.20624573176371 4 4 0 -5.76464633637999 LTS-025 chr14 101349765 101454594 104830 * c(RTL1, MIR136, MIR432, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, NA NA NA NA NA NA NA NA NA LTS-025 SNORD114-27, MEG8) 0.473422120789456 9 0.0170302019300353 1.06079273525615 225 0.27670411930952 4 2 2 -13.2086032343645 LTS-025 NA NA NA NA LTS-025 chr14 101454595 101496016 41422 * c(MIR1197, MIR299, MIR323A, MIR379, MIR380, MIR329-1, MIR329-2, MIR494, MIR411, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758) 0 1 NA 1.00747031164726 55 0.366784342916589 3 3 0 -5.76526693442764 LTS-025 chr14 101496017 102805224 1309208 * c(MIR300, MIR541, MIR543, MIR889, MIR1247, MIR1185-1, MIR1185-2, MIR1193, MEG9, LINC00239, DIO3, DYNC1H1, HSP90AA1, MIR134, MIR154, MIR376C, MIR369, MIR376A1, MIR377, MIR381, MIR382, PPP2R5C, ZNF839, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR494, MIR495, MIR496, MOK, MIR487A, MIR539, MIR376A2, MIR487B, MIR654, MIR655, MIR656, MIR668, WDR20) 0.154586266785629 14 0.229953375589607 1.03751904046289 1294 0.319637138741296 3 3 0 -6.96206460052728 LTS-025 chr14 102805225 102808330 3106 * ZNF839 0.451 1 NA 1.0374991208497 23 0.123286917520151 3 3 0 -5.76557455386273 LTS-025 chr14 102808331 103188738 380408 * c(MIR4309, ANKRD9, RCOR1, CINP, ZNF839, TECPR2) 0.347794178304737 10 0.197296308463522 1.04250356095604 360 0.476869353119164 3 2 1 -6.74830430123739 LTS-025 chr14 103188739 103195745 7007 * RCOR1 0 1 NA 1.04397091222943 65 0.205191528727524 3 3 0 -5.76548351714997 LTS-025 chr14 103195746 103429577 233832 * c(RCOR1, TRAF3, AMN, CDC42BPB) 0.0484680334769211 10 0.165736202710479 1.10019858968409 424 0.581908962033014 3 3 0 -6.74680435600126 LTS-025 chr14 103429578 103432715 3138 * CDC42BPB 0.49 1 NA 1.2499480306398 13 0.348017811952057 4 4 0 -5.76441225096882 LTS-025 chr14 103432716 104323984 891269 * c(LINC00605, CKB, TRMT61A, LINC00637, EIF5, PPP1R13B, KLC1, MARK3, SNORA28, TNFAIP2, XRCC3, ZFYVE21, APOPT1, EXOC3L4, BAG5, CDC42BPB) 0.392937746794445 32 0.154106108056503 1.03530630548404 1295 0.50254898174062 4 2 2 -6.81360251273883 LTS-025 chr14 104323985 104379938 55954 * c(LINC00637, C14orf2) 0 1 NA 0.938534449768246 21 0.331890135292934 3 3 0 -5.76441247432023 LTS-025 chr14 104379939 104645064 265126 * c(MIR203B, TDRD9, KIF26A, ASPG, MIR203A, RD3L, C14orf2) 0.128084673093341 14 0.229075986721236 1.10281588439201 452 0.433651228192259 3 3 0 -6.85071985445138 LTS-025 chr14 104645065 104646326 1262 * KIF26A 0.468 1 NA 1.12302109528322 11 0.262718134474608 4 4 0 -5.76450991965322 LTS-025 chr14 104646327 105063298 416972 * c(KIF26A, TMEM179, C14orf180) 0.45376486248794 17 0.0316124277497837 1.03795029074003 179 0.310301761156115 4 2 2 -9.50869781906589 LTS-025 chr14 105063299 105071347 8049 * TMEM179 0 1 NA 1.07524842173956 13 1.86318533424445 3 3 0 -5.76443482022062 LTS-025 chr14 105071348 105180656 109309 * c(MIR4710, INF2) 0.163069285647653 11 0.227010252071255 1.04162037088261 171 0.626550045743452 6 5 1 -6.78955573059155 LTS-025 chr14 105180657 105182306 1650 * INF2 0.481 1 NA 1.10364936543956 21 1.32273270704467 4 4 0 -5.76441733116896 LTS-025 chr14 105182307 105344761 162455 * c(ZBTB42, SIVA1, ADSSL1, LINC00638, AKT1, CEP170B, INF2) 0.443142866331912 22 0.102657797446776 1.05576036869103 436 0.257101581028619 4 2 2 -7.07141713540453 LTS-025 chr14 105344762 105346734 1973 * CEP170B 0 1 NA 1.14203070326584 7 0.68150928442825 4 4 0 -5.76442588270932 LTS-025 chr14 105346735 105404982 58248 * c(AHNAK2, PLD4, CEP170B) 0.201091446961167 13 0.224219958397083 1.07744428693573 259 0.550658218296097 5 4 1 -6.74993318082902 LTS-025 chr14 105404983 105406372 1390 * AHNAK2 0.489 1 NA 1.02040238293165 29 0.356903921058588 3 3 0 -5.76445291434884 LTS-025 chr14 105406373 105516226 109854 * c(AHNAK2, C14orf79, GPR132, CDCA4) 0.310630889513862 17 0.220858302325003 1.08728077041813 317 0.644639067039831 3 2 1 -6.74101874413409 LTS-025 chr14 105516227 105516817 591 * GPR132 0 1 NA 1.24735664000122 11 1.52013940748269 4 4 0 -5.76441014875299 LTS-025 chr14 105516818 105623938 107121 * c(GPR132, JAG2) 0.160201206235913 12 0.224189178772723 1.15107329455064 231 0.62923169829057 6 5 1 -6.77333338295209 LTS-025 chr14 105623939 105643619 19681 * c(NUDT14, JAG2) 0.472 1 NA 1.03304648512228 47 0.144035902991585 3 3 0 -5.76934752051315 LTS-025 chr14 105643620 105771318 127699 * c(PACS2, NUDT14, BRF1, BTBD6) 0.274700964420555 10 0.239312557129792 1.0439824851564 262 0.431166423289156 4 3 1 -6.74588654187536 LTS-025 chr14 105771319 105772915 1597 * c(PACS2, BRF1) 0 1 NA 0.751586658648769 21 0.251614368580553 2 2 0 -5.76475090566085 LTS-025 chr14 105772916 106306774 533859 * c(CRIP1, CRIP2, ELK2AP, PACS2, C14orf80, BRF1, TEX22, TMEM121, MTA1) 0.0619748743911602 16 0.140205073018062 1.08825260250051 789 0.45537965876161 3 3 0 -6.78680417356444 LTS-025 chr14 106306775 106307418 644 * character(0) 0.383 1 NA 1.38444346839618 7 0.766249710634607 5 5 0 -5.76441668039711 LTS-025 chr14 106307419 106518895 211477 * c(ADAM6, FAM30A) 0.209514665153666 18 0.210369112273387 1.03618168999988 281 0.695680518801525 5 4 1 -6.77318903915399 LTS-025 chr14 106518896 106539113 20218 * character(0) NA 0 NA 0.333 1 NA NA NA NA NA LTS-025 chr14 106539114 106733195 194082 * character(0) 0.322273904224905 6 0.0884158733863251 0.668902957801388 66 0.455966817025579 3 2 1 -6.8023967524155 LTS-025 chr14 106733196 106733216 21 * character(0) 0.279 1 NA 1.777 1 NA NA NA NA NA LTS-025 chr14 106733217 106780713 47497 * LINC00226 0.155877210324506 6 0.107914317863757 1.39871976874991 24 0.805375364821193 7 6 1 -6.74088295758627 LTS-025 chr14 106780714 106791119 10406 * character(0) 0.48 1 NA 1.11735537552617 5 0.648783322843613 4 4 0 -5.76455983948058 LTS-025 chr14 106791120 107282973 491854 * LINC00221 0.317559408604781 31 0.114770111503926 1.22147907269977 230 0.752782001138375 3 2 1 -6.77544410104198 LTS-025 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.929763569570146 5 0.145575753475639 3 NA NA -5.76441090074947 LTS-025 chr15 20169987 20433934 263948 * character(0) 0.018 1 NA 1.39450470521394 13 2.70756669307256 5 5 0 -5.76459523867342 LTS-025 chr15 20433935 22466126 2032192 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.334082790919283 30 0.0693264889415692 1.13847654088286 261 0.730197998555198 3 2 1 -6.81669375504833 LTS-025 chr15 22466127 22845838 379712 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, REREP3) 0 1 NA 0.934180988724783 57 0.470216672047769 3 3 0 -5.76446686504827 LTS-025 chr15 22845839 24920614 2074776 * c(HERC2P7, MIR4508, TUBGCP5, NIPA1, CYFIP1, NPAP1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, MAGEL2, GOLGA8S, MKRN3, PWRN1, PWRN2, NIPA2) 0.208644027678172 21 0.228358771610439 1.08887070039568 851 0.538116683493702 4 3 1 -6.83591115555851 LTS-025 chr15 24920615 24921411 797 * NPAP1 0 1 NA 1.06108248486496 15 1.11525331310019 3 3 0 -5.76441565989011 LTS-025 chr15 24921412 25219512 298101 * c(NPAP1, SNRPN, SNURF) 0.376273203954887 9 0.213355337406872 1.16147005905922 169 0.47792238461901 4 2 2 -6.73682735683878 LTS-025 chr15 25219513 25333341 113829 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD109B, PWARSN, IPW, SNRPN, SNORD116-19, PWAR5, SNURF) 0 1 NA 1.07296240515814 141 0.404679641768654 3 3 0 -5.77156808126081 LTS-025 chr15 25333342 25923225 589884 * c(SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, NA NA NA NA NA NA NA NA NA LTS-025 SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, PWAR1, SNORD109B, SNORD115-1, PWAR4, IPW, UBE3A) 0.0479039393051696 13 0.171699424307982 1.07525213849726 353 0.643075181449968 3 3 0 -6.75132569690292 LTS-025 NA NA NA NA LTS-025 chr15 25923226 25923487 262 * character(0) 0.494 1 NA 1.10983605158763 5 0.193995618507223 4 4 0 -5.76445797077374 LTS-025 chr15 25923488 28356859 2433372 * c(LOC100128714, MIR4715, GABRA5, GABRB3, GABRG3, OCA2, LINC00929, ATP10A, HERC2) 0.269620571668362 23 0.220733452192902 1.08253588315318 687 0.393380968593327 4 3 1 -6.89375844615947 LTS-025 chr15 28356860 28360000 3141 * HERC2 0 1 NA 1.04922624488905 19 0.218550287280011 3 3 0 -5.76487630812756 LTS-025 chr15 28360001 29418662 1058662 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.0747988016468675 12 0.163707055437449 1.04952581603549 585 0.555997204215894 3 3 0 -6.79177656414493 LTS-025 chr15 29418663 29544656 125994 * FAM189A1 0.492 1 NA 1.03358844785845 31 0.273847575529994 3 3 0 -5.77324775236675 LTS-025 chr15 29544657 31666068 2121412 * c(LOC100288637, FAN1, FAM189A1, DKFZP434L187, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, NSMCE3, GOLGA8T, TJP1, CHRFAM7A, ARHGAP11B) 0.286373215371562 12 0.231119852811558 1.0202704015285 950 0.449380914659252 3 2 1 -6.79528847466885 LTS-025 chr15 31666069 31823008 156940 * c(OTUD7A, KLF13) 0 1 NA 1.02922047220988 148 0.355549028601247 3 3 0 -5.77036641572357 LTS-025 chr15 31823009 32404557 581549 * c(CHRNA7, OTUD7A) 0.0955128840184128 3 0.267313174634797 1.11131182218285 76 0.79867700210048 4 4 0 -6.77717303883271 LTS-025 chr15 32404558 32449774 45217 * CHRNA7 NA 0 NA 0.091 1 NA NA NA NA NA LTS-025 chr15 32449775 32908397 458623 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) 0 1 NA 0.748249980580188 93 0.718412711457119 2 2 0 -5.77569972858995 LTS-025 chr15 32908398 32908442 45 * ARHGAP11A NA 0 NA 0.898 1 NA NA NA NA NA LTS-025 chr15 32908443 33059523 151081 * c(GREM1, FMN1, SCG5, ARHGAP11A) 0.20081496096967 6 0.2591862264859 1.04765048199249 280 0.340780844849868 4 3 1 -6.78965405407886 LTS-025 chr15 33059524 33062392 2869 * FMN1 0.368 1 NA 1.11030227676313 59 0.19675982713285 4 4 0 -5.76491708249539 LTS-025 chr15 33062393 33446311 383919 * FMN1 0.429785986905917 18 0.104070991356045 1.09305183150721 340 0.274507374516406 4 2 2 -6.98023295220696 LTS-025 chr15 33446312 33447210 899 * FMN1 0 1 NA 1.14953390941408 19 0.59365762377738 4 4 0 -5.76441807670823 LTS-025 chr15 33447211 34131149 683939 * c(TMCO5B, FMN1, RYR3) 0.316703578081436 13 0.214284079358842 1.09078556227204 528 0.762681946945003 3 2 1 -6.75071623846705 LTS-025 chr15 34131150 34132935 1786 * RYR3 NA 0 NA 0.816 1 NA NA NA NA NA LTS-025 chr15 34132936 34135622 2687 * RYR3 0.435 1 NA 0.861971865780478 11 0.202416582145023 3 3 0 -5.76471380375577 LTS-025 chr15 34135623 34153395 17773 * RYR3 0 1 NA 1.04807487966621 53 1.20386859573253 3 3 0 -5.76449534843739 LTS-025 chr15 34153396 34651346 497951 * c(CHRM5, PGBD4, LPCAT4, NUTM1, EMC4, NOP10, EMC7, AVEN, RYR3, KATNBL1, SLC12A6) 0.0888033287137835 14 0.206702259725974 0.992256991156125 616 0.51469873358923 3 3 0 -6.7758648931576 LTS-025 chr15 34651347 34817989 166643 * c(MIR1233-2, GOLGA8A, LPCAT4, GOLGA8B) 0.498 1 NA 0.977945717064014 145 0.36735022464658 3 3 0 -5.76550042576784 LTS-025 chr15 34817990 35084383 266394 * c(MIR1233-2, GOLGA8B, GJD2, ACTC1) 0.198234265058579 11 0.239644054228918 1.04889553168796 153 0.764532767285472 5 4 1 -6.77514664380283 LTS-025 chr15 35084384 35148102 63719 * ACTC1 0.448 1 NA 1.11173256143915 31 0.221982935506119 4 4 0 -5.77303512529784 LTS-025 chr15 35148103 38647695 3499593 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, MEIS2, ZNF770, ANP32AP1, C15orf41, DPH6, AQR) 0.371098614551983 17 0.173499555008753 1.03611114096758 961 0.306002322535275 3 2 1 -6.96667300880586 LTS-025 chr15 38647696 38647804 109 * SPRED1 0 1 NA 1.40912650548332 3 1.20852513420284 5 5 0 -5.76441043397572 LTS-025 chr15 38647805 38991200 343396 * c(RASGRP1, SPRED1, FAM98B, C15orf53) 0.225597993975038 10 0.248136969344666 0.97848441119643 382 0.414335946272865 4 3 1 -6.81194486830992 LTS-025 chr15 38991201 38991259 59 * C15orf53 0.45 1 NA 1.14268833343229 3 0.176034087608054 4 4 0 -5.76441697558926 LTS-025 chr15 38991260 40545438 1554179 * c(SRP14-AS1, GPR176, FSIP1, C15orf53, C15orf54, EIF2AK4, PAK6, C15orf56, SRP14, BUB1B, THBS1, BMF) 0.406405748666066 37 0.147729568893724 0.997229247193434 1085 0.253536181458153 3 2 1 -6.93698292969382 LTS-025 chr15 40545439 40585738 40300 * c(ANKRD63, PLCB2, PAK6) 0 1 NA 1.05483531198014 197 0.187941757924358 3 3 0 -5.77330099029257 LTS-025 chr15 40585739 40627250 41512 * c(C15orf52, PLCB2) 0.256199996405318 11 0.234649138463831 1.02465946605784 199 0.639137883639225 4 3 1 -6.73583033097024 LTS-025 chr15 40627251 40627845 595 * C15orf52 0.492 1 NA 1.12307913977406 13 0.215165291262561 4 4 0 -5.76448013558026 LTS-025 chr15 40627846 40716654 88809 * c(IVD, C15orf52, PHGR1, DISP2, KNSTRN) 0.415642368896762 20 0.144675126076541 1.01981168696467 406 0.336982252215298 4 2 2 -6.813507311994 LTS-025 chr15 40716655 40726114 9460 * character(0) 0 1 NA 1.08922558095447 7 1.33230861218234 4 4 0 -5.76446086702154 LTS-025 chr15 40726115 41226896 500782 * c(RAD51-AS1, CHST14, RHOV, BAHD1, GCHFR, RPUSD2, MRPL42P5, DLL4, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, ZFYVE19, C15orf57) 0 9 0 1.00654221830901 1237 0.356200019777542 0 0 0 -Inf LTS-025 chr15 41226897 41245289 18393 * DLL4 0.476 1 NA 1.01170501025488 53 0.327597546380883 3 3 0 -5.76494761387235 LTS-025 chr15 41245290 41799711 554422 * c(CHP1, OIP5, EXD1, RTF1, ITPKA, LTK, NDUFAF1, NUSAP1, INO80, OIP5-AS1, CHAC1) 0.434657388105144 16 0.126335647516183 0.970659196659732 833 0.257862468340633 3 2 1 -7.12255654011953 LTS-025 chr15 41799712 41803682 3971 * LTK 0 1 NA 0.914350888038162 25 0.255622723298745 3 3 0 -5.76444053016826 LTS-025 chr15 41803683 42360525 556843 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, RPAP1, PLA2G4D, EHD4, LTK, SPTBN5, MIR626, TYRO3, JMJD7-PLA2G4B) 0.0938540950768794 26 0.182733100870768 1.06279370291256 1576 0.368588297253248 3 3 0 -6.82978880711841 LTS-025 chr15 42360526 42363350 2825 * PLA2G4D 0 1 NA 1.13433385088862 25 0.368362783136408 4 4 0 -5.7645011759856 LTS-025 chr15 42363351 42645527 282177 * c(VPS39, PLA2G4F, GANC, TMEM87A, PLA2G4D, MIR627, CAPN3) 0.254413159460583 9 0.241168912682469 1.03487322811728 625 0.324819599067639 4 3 1 -6.78392513750486 LTS-025 chr15 42645528 42684803 39276 * c(GANC, CAPN3) 0 1 NA 1.18884200254743 59 0.517356958662776 4 4 0 -5.76454030979837 LTS-025 chr15 42684804 43430786 745983 * c(TTBK2, CDAN1, UBR1, LRRC57, HAUS2, STARD9, ZNF106, TMEM62, CAPN3, SNAP23) 0.0540944593247367 15 0.16440649390488 1.01648677492743 1435 0.362992521851703 3 3 0 -6.76080211600956 LTS-025 chr15 43430787 43441367 10581 * TMEM62 0.482 1 NA 1.12643337976644 15 0.664369138642782 4 4 0 -5.76453285794093 LTS-025 chr15 43441368 43585734 144367 * c(TGM7, EPB42, CCNDBP1, TMEM62, TGM5) 0.157677308674797 9 0.247378252884121 1.01112949435452 361 0.49416346594128 5 4 1 -6.82678992407472 LTS-025 chr15 43585735 43620443 34709 * c(TGM7, LCMT2) 0.39 1 NA 0.979723238552234 19 0.292962804257405 3 3 0 -5.76480182697868 LTS-025 chr15 43620444 43748304 127861 * c(ZSCAN29, ADAL, TUBGCP4, TP53BP1, LCMT2) 0.417184842430625 12 0.136420695133129 0.970790422261868 458 0.266898248898196 4 2 2 -6.87069154235632 LTS-025 chr15 43748305 43815999 67695 * c(MAP1A, TP53BP1) 0.464 1 NA 1.04169429770717 159 0.226513509957918 3 3 0 -5.77255664490694 LTS-025 chr15 43816000 43851002 35003 * c(MAP1A, PPIP5K1) 0.257988881711908 9 0.245751398775266 1.02554616474196 212 0.453771811293399 4 3 1 -6.73692630658695 LTS-025 chr15 43851003 43922003 71001 * c(CKMT1B, STRC, PPIP5K1) 0.471 1 NA 0.927868773739058 157 0.23555021434651 3 3 0 -5.764564946013 LTS-025 chr15 43922004 44120559 198556 * c(MIR1282, SERF2-C15ORF63, SERF2, CATSPER2, STRC, HYPK, PDIA3, MFAP1, CATSPER2P1, CKMT1A, SERINC4, WDR76, ELL3) 0.448908000674886 9 0.0426050988080587 0.999663882181305 689 0.340666857915699 4 2 2 -8.39496163952655 LTS-025 chr15 44120560 44160134 39575 * WDR76 0 1 NA 0.987434714773509 73 0.331312974830017 3 3 0 -5.76490889887976 LTS-025 chr15 44160135 45060093 899959 * c(CASC4, TRIM69, PATL2, CTDSPL2, B2M, EIF3J-AS1, PIN4P1, WDR76, SPG11, FRMD5, EIF3J) 0.137906631622017 11 0.209824818707069 0.990051479508352 952 0.338198375416051 3 3 0 -6.88482609708354 LTS-025 chr15 45060094 45117968 57875 * character(0) NA 0 NA 2.069 1 NA NA NA NA NA LTS-025 chr15 45117969 45139663 21695 * character(0) NA 0 NA 2.40275165927299 39 3.14880170854408 8 NA NA -5.76441015696453 LTS-025 chr15 45139664 45139668 5 * character(0) NA 0 NA 1.297 1 NA NA NA NA NA LTS-025 chr15 45139669 45411058 271390 * c(TERB2, DUOXA2, DUOX2, SORD, DUOXA1) 0.0626811168297796 6 0.1796292478041 1.01635658639782 390 0.409295914484058 3 3 0 -6.75250829570272 LTS-025 chr15 45411059 45428712 17654 * c(DUOX1, DUOXA1) 0.478 1 NA 1.11322404738275 71 0.194291524205946 4 4 0 -5.76745342410652 LTS-025 chr15 45428713 45706739 278027 * c(NA, GATM, DUOX1, SPATA5L1, SHF, SLC28A2) 0.376257521125631 19 0.173396800121564 1.04502030521182 468 0.463154806621988 4 2 2 -6.75596867969562 LTS-025 chr15 45706740 45781212 74473 * c(MIR147B, SLC30A4, SPATA5L1, C15orf48) 0 1 NA 1.07145181927299 188 0.377365577597855 3 3 0 -5.76968220858529 LTS-025 chr15 45781213 48787484 3006272 * c(DUT, FBN1, BLOC1S6, HMGN2P46, SLC24A5, CTXN2, MYEF2, SQRDL, SLC12A1, SLC30A4, SEMA6D) 0.146159057594257 16 0.232922590860855 1.07863178530645 1377 0.418428882188543 3 3 0 -7.05125002482194 LTS-025 chr15 48787485 48787662 178 * FBN1 NA 0 NA 0.857 1 NA NA NA NA NA LTS-025 chr15 48787663 49083636 295974 * c(FBN1, CEP152) 0.297442083415084 6 0.235840341474199 0.992172712278305 346 0.268975931335436 3 2 1 -6.75138985538109 LTS-025 chr15 49083637 49117232 33596 * c(CEP152, SHC4) 0.452 1 NA 1.00484713001665 65 0.285035047608859 3 3 0 -5.76547437854472 LTS-025 chr15 49117233 50311135 1193903 * c(NDUFAF4P1, MIR4716, FAM227B, FGF7, EID1, GALK2, SHC4, DTWD1, ATP8B4, COPS2, SECISBP2L) 0.458467562332137 15 0.0360895711093543 0.964911200951319 957 0.239865126109672 4 2 2 -9.83729298536467 LTS-025 chr15 50311136 50535435 224300 * c(SLC27A2, HDC, ATP8B4) 0 1 NA 0.94672850449385 123 0.281273912277414 3 3 0 -5.7644697930527 LTS-025 chr15 50535436 51233981 698546 * c(GABPB1-AS1, MIR4712, AP4E1, GABPB1, HDC, USP50, TRPM7, FLJ10038, SPPL2A, USP8) 0 4 0 0.93814261355977 755 0.260208390653154 0 0 0 -Inf LTS-025 chr15 51233982 51240244 6263 * c(DCAF13P3, AP4E1) NA 0 NA 1.342 1 NA NA NA NA NA LTS-025 chr15 51240245 51501893 261649 * c(CYP19A1, AP4E1, TNFAIP8L3) 0 5 0 1.09778398061706 205 0.486421355375784 0 0 0 -Inf LTS-025 chr15 51501894 51634255 132362 * c(MIR4713, CYP19A1, GLDN) 0.477 1 NA 1.05041628029901 113 0.301730971515909 3 3 0 -5.77491821537728 LTS-025 chr15 51634256 51988143 353888 * c(DMXL2, SCG3, GLDN) 0.313262079666431 23 0.221703519577127 1.06592374067831 469 0.306034614263609 3 2 1 -6.77145255050052 LTS-025 chr15 51988144 52005713 17570 * SCG3 0.416 1 NA 1.10200921443634 15 0.207361818591379 4 4 0 -5.76761109522781 LTS-025 chr15 52005714 52246665 240952 * c(LEO1, LYSMD2, SCG3, TMOD3, TMOD2) 0.468109979194837 9 0.018145247311624 1.01327984381252 398 0.275249367383521 4 2 2 -12.6607744985145 LTS-025 chr15 52246666 52250965 4300 * LEO1 0 1 NA 0.830574373204478 9 0.270987545839288 3 3 0 -5.76495867805103 LTS-025 chr15 52250966 52879363 628398 * c(LOC100129973, BCL2L10, MIR1266, GNB5, ARPP19, LEO1, MYO5A, MYO5C, MAPK6, FAM214A) 0.213692511264055 10 0.23936445944301 0.970587408856045 840 0.254109186365921 3 2 1 -6.87735029762922 LTS-025 chr15 52879364 52893356 13993 * FAM214A 0 1 NA 0.913552531433119 17 0.233371815804233 3 3 0 -5.76454655504952 LTS-025 chr15 52893357 54305191 1411835 * c(WDR72, ONECUT1, UNC13C, FAM214A) 0.41880266884779 9 0.159119277413029 1.09666498349865 360 0.340053571024951 4 2 2 -6.89484989404358 LTS-025 chr15 54305192 54305810 619 * UNC13C 0 1 NA 1.29377272178751 15 1.37034898926549 4 4 0 -5.76441055484457 LTS-025 chr15 54305811 55473192 1167382 * UNC13C 0.182816248287321 9 0.235810835204831 1.09041374385833 221 0.688857791545134 4 3 1 -6.82629193618436 LTS-025 chr15 55473193 55484826 11634 * RSL24D1 0.477 1 NA 0.891324518113708 39 0.269582803585844 3 3 0 -5.76469415065826 LTS-025 chr15 55484827 55911540 426714 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, PYGO1, PRTG, RSL24D1, RAB27A, MIR628, CCPG1, PIGB) 0.456948162645082 23 0.0488818855526039 0.995985338748104 668 0.256609109882284 4 2 2 -8.42160687424096 LTS-025 chr15 55911541 55911963 423 * PRTG 0 1 NA 0.835966872397233 11 0.315272666981225 3 3 0 -5.76444590591542 LTS-025 chr15 55911964 59784648 3872685 * c(MIR2116, MYZAP, ADAM10, FAM81A, GCOM1, LOC145783, PRTG, LINC00926, AQP9, TEX9, LIPC, MYO1E, NEDD4, FAM63B, RNF111, ZNF280D, MNS1, RFX7, HSP90AB4P, TCF12, SLTM, POLR2M, CGNL1, ALDH1A2, CCNB2, LDHAL6B) 0.392672845129524 55 0.142960560594599 1.00783351784403 2833 0.270801971188262 3 2 1 -6.99060310320964 LTS-025 chr15 59784649 59912098 127450 * c(FAM81A, GCNT3) 0 1 NA 0.970270168617136 107 0.293618023362151 3 3 0 -5.76523430283633 LTS-025 chr15 59912099 63084853 3172755 * c(C2CD4A, MGC15885, FOXB1, GTF2A2, ANXA2, C2CD4B, VPS13C, RORA, BNIP2, ICE2, TLN2, GCNT3) 0.153758382378493 20 0.21955349426075 1.02653819313181 1737 0.370510551612864 3 3 0 -7.00515901045897 LTS-025 chr15 63084854 63112830 27977 * TLN2 NA 0 NA 1.02038496456897 43 0.25796050759234 3 NA NA -5.76605836414638 LTS-025 chr15 63112831 63116090 3260 * TLN2 NA 0 NA 1.439 1 NA NA NA NA NA LTS-025 chr15 63116091 63136769 20679 * c(MIR190A, TLN2) NA 0 NA 1.4590373024624 110 0.249942286749537 5 NA NA -5.76485499677671 LTS-025 chr15 63136770 63340416 203647 * c(TPM1, TLN2) 0.357 1 NA 0.896267163166783 25 0.311949648714874 3 3 0 -5.76740515979187 LTS-025 chr15 63340417 64418483 1078067 * c(USP3-AS1, LACTB, DAPK2, FBXL22, RPS27L, RAB8B, SNX1, TPM1, CA12, APH1B, FAM96A, HERC1, USP3) 0.429246307619162 40 0.127790252828409 0.983709142122318 1445 0.26415610115842 3 2 1 -7.09177606035586 LTS-025 chr15 64418484 64422158 3675 * SNX1 0 1 NA 0.996827000854424 15 0.642412840113627 3 3 0 -5.76442778690176 LTS-025 chr15 64422159 65067593 645435 * c(MIR1272, ZNF609, RBPMS2, OAZ2, CSNK1G1, PPIB, SNX1, SNX22, TRIP4, KIAA0101) 0.32448153116546 11 0.20388004494622 0.964357554474637 770 0.275148876309222 3 2 1 -6.7365315044347 LTS-025 chr15 65067594 65107813 40220 * RBPMS2 NA 0 NA 1.336 1 NA NA NA NA NA LTS-025 chr15 65107814 65108521 708 * PIF1 0 1 NA 1.39169419911189 13 1.0676063449101 5 5 0 -5.76441346427149 LTS-025 chr15 65108522 65108652 131 * PIF1 0.357 1 NA 1.78925866124043 3 0.347036501442331 6 6 0 -5.76441037501152 LTS-025 chr15 65108653 65116619 7967 * PIF1 NA 0 NA 1.4090484907143 74 0.33843403777796 5 NA NA -5.76469202918857 LTS-025 chr15 65116620 65369947 253328 * c(MTFMT, SLC51B, ANKDD1A, KBTBD13, RASL12, SPG21, PIF1, PLEKHO2) 0.420010567855559 10 0.148546326481375 0.984484976992249 451 0.272791030302232 4 2 2 -6.90806151609935 LTS-025 chr15 65369948 65412275 42328 * c(PDCD7, KBTBD13, UBAP1L) 0 1 NA 0.971753021222187 95 0.322894240396949 3 3 0 -5.76465973244987 LTS-025 chr15 65412276 66386774 974499 * c(MIR4311, MIR4511, PDCD7, DENND4A, CLPX, HACD3, DPP8, PARP16, IGDCC4, VWA9, MEGF11, CILP, RAB11A, SLC24A1, IGDCC3) 0.155602031841208 29 0.215892397025917 1.00933750762186 1607 0.305974196459875 3 3 0 -6.94369617951726 LTS-025 chr15 66386775 66386853 79 * MEGF11 0.382 1 NA 1.11847631584296 3 0.330807093837683 4 4 0 -5.76441436558486 LTS-025 chr15 66386854 68126675 1739822 * c(IQCH-AS1, SNAPC5, DIS3L, C15orf61, LCTL, SKOR1, SMAD3, SMAD6, TIPIN, ZWILCH, MAP2K1, MAP2K5, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SCARNA14, AAGAB, MEGF11) 0.381325635234749 44 0.184680737030209 1.00174763538486 1462 0.349198310236251 3 2 1 -6.81190036789754 LTS-025 chr15 68126676 68380099 253424 * PIAS1 0 1 NA 0.951123495506319 30 0.328667732156535 3 3 0 -5.76456691076891 LTS-025 chr15 68380100 68613856 233757 * c(FEM1B, ITGA11, CLN6, PIAS1, CALML4) 0.231611052315704 10 0.228333114355126 1.07859488515296 435 0.289044715861336 4 3 1 -6.77588679718709 LTS-025 chr15 68613857 68617453 3597 * ITGA11 NA 0 NA 1.686 1 NA NA NA NA NA LTS-025 chr15 68617454 69019582 402129 * c(CORO2B, ITGA11) 0.238222985305935 15 0.165678633274812 1.54277104287817 197 0.919807166872932 5 4 1 -6.74349209535413 LTS-025 chr15 69019583 69222874 203292 * c(MIR548H4, MIR4312, CORO2B, SPESP1, NOX5, ANP32A-IT1, ANP32A) 0 1 NA 1.54504326009898 91 0.565837238923333 5 5 0 -5.76444781189052 LTS-025 chr15 69222875 69353387 130513 * c(MIR548H4, SPESP1, NOX5) 0.0140666987120228 2 0.0176776695296637 1.55717322162643 206 0.435554861760949 7 7 0 -6.80254424738722 LTS-025 chr15 69353388 70348578 995191 * c(MIR548H4, DRAIC, GLCE, EWSAT1, LINC00593, PAQR5, RPLP1, TLE3, KIF23) 0.0817014394758253 9 0.179955550067232 1.1099450559059 580 0.423917060172935 4 4 0 -6.82385401187454 LTS-025 chr15 70348579 70351788 3210 * TLE3 0.498 1 NA 1.05944559122596 23 0.247143115153121 3 3 0 -5.76485208606661 LTS-025 chr15 70351789 72073571 1721783 * c(CT62, LRRC49, UACA, LARP6, THAP10, MIR629, TLE3, THSD4) 0.366116941263694 18 0.203094145721002 1.04037387394606 814 0.276312243150795 3 2 1 -6.8847639607707 LTS-025 chr15 72073572 72105753 32182 * c(NR2E3, THSD4) 0 1 NA 1.08978961763976 77 0.34743322553611 4 4 0 -5.76692636755345 LTS-025 chr15 72105754 73044911 939158 * c(NR2E3, SENP8, HIGD2B, GRAMD2, ARIH1, HEXA, TMEM202, MYO9A, PKM, GOLGA6B, PARP6, BBS4, CELF6, MIR630, HEXA-AS1, ADPGK) 0 22 0 1.03637659047205 1204 0.393539153268762 0 0 0 -Inf LTS-025 chr15 73044912 73052840 7929 * ADPGK 0.458 1 NA 0.913981162515528 25 0.340701115348923 3 3 0 -5.76444526765968 LTS-025 chr15 73052841 73615680 562840 * c(HCN4, ADPGK-AS1, NEO1, ADPGK) 0.128825303651085 9 0.228593221927316 1.12490226254689 307 0.391391208961906 4 4 0 -6.86682053984261 LTS-025 chr15 73615681 73617403 1723 * HCN4 0 1 NA 1.39646794984212 23 1.23624309587349 5 5 0 -5.76441575280487 LTS-025 chr15 73617404 74181433 564030 * c(HCN4, TBC1D21, NPTN, REC114, C15orf59, CD276) 0.0333317056217477 11 0.140805797917816 1.07944717960515 345 0.512832732125396 4 4 0 -6.75724024687648 LTS-025 chr15 74181434 74181538 105 * TBC1D21 0.419 1 NA 1.03372678695915 3 0.0542862781925599 3 3 0 -5.76459656897579 LTS-025 chr15 74181539 74499956 318418 * c(LOXL1-AS1, TBC1D21, LOC283731, GOLGA6A, ISLR, LOXL1, PML, ISLR2, STRA6, STOML1) 0.424217348744276 21 0.143646838759905 1.04460959581611 562 0.272723703048809 4 2 2 -6.89368963363016 LTS-025 chr15 74499957 74509659 9703 * STRA6 0 1 NA 1.06413847237396 9 0.930856251582977 3 3 0 -5.76451149145733 LTS-025 chr15 74509660 75094659 585000 * c(MIR4513, ARID3B, CLK3, CSK, CYP1A1, CYP1A2, CYP11A1, UBL7-AS1, LOC729739, CCDC33, EDC3, SEMA7A, UBL7) 0.224804804228186 21 0.222656793336847 1.01357996427693 851 1.04698441139415 4 3 1 -6.7641111989547 LTS-025 chr15 75094660 75105878 11219 * c(CSK, LMAN1L) 0.456 1 NA 0.992282069045203 29 0.297715435097958 3 3 0 -5.76462277319876 LTS-025 chr15 75105879 75498608 392730 * c(SCAMP2, SCAMP5, ULK3, MPI, RPP25, C15orf39, FAM219B, CPLX3, PPCDC, LMAN1L, COX5A) 0.40762388457684 12 0.13450343580156 0.987934914494034 561 0.305090285148393 4 2 2 -6.90752645565498 LTS-025 chr15 75498609 75520825 22217 * C15orf39 0 1 NA 1.06512466758439 93 0.271531988632767 3 3 0 -5.76717780027445 LTS-025 chr15 75520826 75798226 277401 * c(SIN3A, MAN2C1, COMMD4, PTPN9, GOLGA6C, GOLGA6D, MIR631, NEIL1) 0.177291007141266 11 0.233319250657276 1.02554213500133 509 0.38880996299109 4 3 1 -6.85275911316848 LTS-025 chr15 75798227 75890612 92386 * c(SNUPN, PTPN9) 0.424 1 NA 0.874431854139843 55 0.330422008503828 3 3 0 -5.76715283503574 LTS-025 chr15 75890613 76209541 318929 * c(DNM1P35, MIR4313, SNUPN, CSPG4, ODF3L1, SNX33, FBXO22, IMP3, UBE2Q2) 0.364707102506477 11 0.158509993949335 1.02045931975 634 0.297192234666447 3 2 1 -6.77555372488733 LTS-025 chr15 76209542 76226710 17169 * c(FBXO22, FBXO22-AS1) 0 1 NA 1.02713625282942 41 0.474268670640619 3 3 0 -5.76476025188194 LTS-025 chr15 76226711 77934231 1707521 * c(TSPAN3, HMG20A, TMEM266, NRG4, ETFA, LINGO1-AS1, FBXO22, SCAPER, RCN2, ISL2, TYRO3P, PEAK1, LINC00597, LINGO1, PSTPIP1) 0.127514601613616 14 0.224268248427519 1.03549718943142 1165 0.381943888247858 3 3 0 -6.89587135546938 LTS-025 chr15 77934232 78189084 254853 * c(LINGO1-AS1, LINGO1) 0.475 1 NA 1.24394044436183 17 0.439121440726688 4 4 0 -5.76444736354174 LTS-025 chr15 78189085 78441769 252685 * c(MIR5003, CIB2, TBC1D2B, IDH3A, LOC645752, SH2D7, LOC91450) 0.37115504226761 10 0.142811491912319 1.02545869941854 322 0.709781722185315 4 2 2 -6.74367635907672 LTS-025 chr15 78441770 78460247 18478 * IDH3A 0 1 NA 0.96552951580932 67 0.205878693980234 3 3 0 -5.76458135970771 LTS-025 chr15 78460248 78836923 376676 * c(HYKK, CRABP1, ACSBG1, IDH3A, IREB2, DNAJA4, PSMA4, WDR61) 0.269346532195923 16 0.23430478726081 0.988246780386067 631 0.312149487897638 3 2 1 -6.77870334406728 LTS-025 chr15 78836924 78841220 4297 * PSMA4 0.478 1 NA 0.911833694985242 21 0.180366980401202 3 3 0 -5.76448941502977 LTS-025 chr15 78841221 81047829 2206609 * c(ST20-MTHFS, MTHFS, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CTSH, FAH, KIAA1024, TMED3, ST20-AS1, LINC00927, ANKRD34C, ST20, MIR184, ZFAND6, PSMA4, ABHD17C, RASGRF1, BCL2A1, LOC646938, ANKRD34C-AS1, ARNT2) 0.364551176435781 60 0.185298107655111 1.04050335045764 1585 0.376708762955252 3 2 1 -6.84617589296783 LTS-025 chr15 81047830 81193464 145635 * c(CEMIP, ABHD17C, MIR549A) 0 1 NA 1.07194198076034 74 0.236452686228936 3 3 0 -5.79076241425824 LTS-025 chr15 81193465 84488635 3295171 * c(NA, UBE2Q2P2, NA, MIR4514, MIR4515, C15orf40, WHAMM, FSD2, CFAP161, MESDC2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, ADAMTS7P1, GOLGA6L9, HDGFRP3, BTBD1, TM6SF1, ADAMTSL3, CEMIP, MESDC1, CPEB1, SH3GL3, BNC1, GOLGA6L10, SCARNA15, EFL1, STARD5, AP3B2, FAM103A1, MEX3B, HOMER2) 0.193694559736021 42 0.231743045506298 1.03180926943157 2137 0.386736151786487 3 2 1 -7.04398137044539 LTS-025 chr15 84488636 84566544 77909 * ADAMTSL3 0.482 1 NA 1.07502908439399 41 0.336003215722126 3 3 0 -5.771726634942 LTS-025 chr15 84566545 86077405 1510861 * c(UBE2Q2L, LINC00933, AKAP13, SEC11A, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, PDE8A, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, EFTUD1P1, WDR73, SLC28A1, ZNF592) 0.280839538361683 32 0.229217003025095 1.03143793521287 1164 0.434215008324021 3 2 1 -6.80076676963236 LTS-025 chr15 86077406 86123569 46164 * AKAP13 0.494 1 NA 0.971515962267367 91 0.328486785508897 3 3 0 -5.76466916817297 LTS-025 chr15 86123570 86312273 188704 * c(AKAP13, KLHL25) 0.461483058405056 21 0.024079728680642 1.03015671464743 359 0.266998722960012 4 2 2 -10.9345792397871 LTS-025 chr15 86312274 86312323 50 * KLHL25 0 1 NA 5.558 1 NA NA NA NA NA LTS-025 chr15 86312324 88406368 2094045 * c(MIR1276, AGBL1, LINC00052, KLHL25, AGBL1-AS1) 0.177702547727127 15 0.23401479399714 1.16496687476871 253 0.509112785332209 4 3 1 -6.8302639596826 LTS-025 chr15 88406369 88409161 2793 * character(0) 0.494 1 NA 1.12755948996756 60 0.378072471978319 4 4 0 -5.76450798914421 LTS-025 chr15 88409162 88419424 10263 * character(0) 0.34524353255618 16 0.184624664296693 1.14980874743913 222 0.414478680288284 3 2 1 -6.73847046640961 LTS-025 chr15 88419425 88474532 55108 * NTRK3 0 1 NA 1.05355951659353 51 0.59309202804075 3 3 0 -5.76560673605679 LTS-025 chr15 88474533 89414723 940191 * c(MIR1179, MIR3529, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, AEN, MRPS11) 0.183043411085553 12 0.230811398148253 1.06750718137852 519 0.366299150555602 4 3 1 -6.89443303171628 LTS-025 chr15 89414724 89421327 6604 * c(HAPLN3, ACAN) 0.474 1 NA 1.19116064150612 43 0.348232499566242 4 4 0 -5.76445366927839 LTS-025 chr15 89421328 89867154 445827 * c(ABHD2, HAPLN3, MFGE8, POLG, FANCI, RLBP1) 0.453533887184843 23 0.0444616457709792 0.993846487573777 582 0.232216483971221 4 2 2 -8.60873479253122 LTS-025 chr15 89867155 90020131 152977 * c(MIR9-3HG, MIR9-3, RHCG, POLG) 0 1 NA 1.06039081395661 83 0.436974585219921 3 3 0 -5.7712440112778 LTS-025 chr15 90020132 90174824 154693 * c(LINC00928, KIF7, RHCG, TICRR) 0.24589193793329 20 0.235932165764029 1.09702401523038 281 0.621027883557225 4 3 1 -6.73996922585162 LTS-025 chr15 90174825 90176278 1454 * KIF7 0 1 NA 1.02967292093151 9 0.280241017300783 3 3 0 -5.76449986239048 LTS-025 chr15 90176279 90350094 173816 * c(MESP2, ANPEP, KIF7, PLIN1, MESP1, WDR93, PEX11A) 0.107357613523993 13 0.213674356835889 1.044166298001 545 0.529568507117292 3 3 0 -6.80419712069284 LTS-025 chr15 90350095 90373873 23779 * c(C15orf38-AP3S2, AP3S2, ANPEP) 0.478 1 NA 0.918464758577976 7 0.295036962978894 3 3 0 -5.76450760499951 LTS-025 chr15 90373874 91482935 1109062 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, FES, GABARAPL3, IDH2, ZNF774, ARPIN, ZNF710, HDDC3, GDPGP1, MAN2A2, TTLL13P, FURIN, NGRN, UNC45A, BLM, CRTC3, IQGAP1) 0.398467945482407 51 0.152579732933181 1.02648345891899 1764 0.284958724795488 3 2 1 -6.91206735493656 LTS-025 chr15 91482936 91483053 118 * UNC45A 0 1 NA 0.990157206095717 5 0.317021608096357 3 3 0 -5.76441193531833 LTS-025 chr15 91483054 93306040 1822987 * c(LINC00930, PRC1-AS1, C15orf32, VPS33B, SLCO3A1, FAM174B, UNC45A, ST8SIA2, PRC1, RCCD1, SV2B) 0.199188857083144 39 0.234431393530399 1.06402027717694 1079 0.473088810702553 4 3 1 -6.88569352193258 LTS-025 chr15 93306041 93447631 141591 * c(MIR3175, LINC01578, CHD2, ASB9P1) 0.452 1 NA 0.848027961366945 43 0.361335639088237 3 3 0 -5.77146343101987 LTS-025 chr15 93447632 95023525 1575894 * c(MIR3175, CHD2, MCTP2, RGMA) 0.417486339424287 31 0.118225627191109 1.0312427392158 701 0.288931183762637 3 2 1 -7.13696387822584 LTS-025 chr15 95023526 95023625 100 * MCTP2 NA 0 NA 1.09083739510166 3 0.137986714336321 4 NA NA -5.7644584799088 LTS-025 chr15 96831249 97326884 495636 * c(MIR1469, SPATA8-AS1, SPATA8, NR2F2-AS1, NR2F2) 0 1 NA 1.59450451635241 139 0.409100194115011 5 5 0 -5.76746229277122 LTS-025 chr15 97326885 98420349 1093465 * c(SPATA8, LINC00923) 0.18066992314174 13 0.193630397327565 1.60493861392542 113 0.985125299903899 6 5 1 -6.74415536074779 LTS-025 chr15 98420350 98420879 530 * character(0) 0.333 1 NA 1.5484875033657 11 0.52109545452563 5 5 0 -5.76441030781887 LTS-025 chr15 98420880 100943149 2522270 * c(MIR4714, LRRC28, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, TTC23, HSP90B2P, ARRDC4) 0.280751552526779 59 0.112170528002794 1.55006451364391 1530 1.15038096015347 4 3 1 -6.80462368033283 LTS-025 chr15 100943150 100996028 52879 * CERS3 NA 0 NA 1.387 1 NA NA NA NA NA LTS-025 chr15 100996029 101813120 817092 * c(ASB7, CERS3, ALDH1A3, CHSY1, PRKXP1, LINS1, SELENOS, LRRK1) 0.282633751544673 42 0.11535989486223 1.41437759031561 804 0.434085094681527 4 3 1 -6.79582226764861 LTS-025 chr15 101813121 101827755 14635 * c(SELENOS, SNRPA1) 0 1 NA 1.29212976011277 61 0.347869588811198 4 4 0 -5.76455614393651 LTS-025 chr15 101827756 102312009 484254 * c(LOC100507472, TARSL2, PCSK6, SNRPA1, TM2D3) 0.188066095650896 13 0.189606339826927 1.4247792602673 439 0.59190585712716 5 4 1 -6.75053729708918 LTS-025 chr15 102312010 102516544 204535 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) NA 0 NA 1.55715587514733 95 0.277243401536283 5 NA NA -5.76491334184012 LTS-025 chr16 81704 103009 21306 * POLR3K 0.206 1 NA 0.61385807136723 31 0.167377687648565 2 2 0 -5.76565893321901 LTS-025 chr16 103010 2653223 2550214 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-025 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.0669898906373026 285 0.0672563324711857 0.609967675827469 8215 0.278851403925016 2 2 0 -6.83937693605768 LTS-025 NA NA NA NA LTS-025 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.091 1 NA NA NA NA NA LTS-025 chr16 2672647 2747930 75284 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0 2 0 0.465699473107438 82 1.11932726682681 0 0 0 -Inf LTS-025 chr16 2747931 11410557 8662627 * c(LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, CLEC16A, MGRN1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, UBN1, CDIP1, NA NA NA NA NA NA NA NA NA LTS-025 HMOX2, C16orf96, PRSS41, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, PRM1, PRM2, NMRAL1, PRM3, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, TNP2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, SEC14L5) 0.0669331628862983 184 0.0870528835361318 0.598050654318997 7030 0.31865353137114 2 2 0 -7.05568639055258 LTS-025 NA NA NA NA LTS-025 chr16 11410558 11439639 29082 * RMI2 0.188 1 NA 0.362740585913983 9 0.260090422310738 1 1 0 -5.76462071177708 LTS-025 chr16 11439640 14772727 3333088 * c(MIR365A, MIR4718, RMI2, ERCC4, RSL1D1, ZC3H7A, GSPT1, BCAR4, PARN, TXNDC11, BFAR, CPPED1, MIR193B, MKL2, TNFRSF17, SHISA9, SNN, PLA2G10, SNX29, LITAF) 0.156661639638234 46 0.115317457230157 0.567630829751776 1394 0.233118552055708 2 2 0 -7.77928854978783 LTS-025 chr16 14772728 14916715 143988 * c(NPIPA3, ABCC6P2, PLA2G10) NA 0 NA 1.497 1 NA NA NA NA NA LTS-025 chr16 14916716 15123936 207221 * c(PDXDC1, NOMO1, ABCC6P2, NPIPA1) NA 0 NA 1.51071646995618 133 0.409227295775968 5 NA NA -5.76452656482334 LTS-025 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.5 1 NA NA NA NA NA LTS-025 chr16 15125636 19126470 4000835 * c(NPIPA5, MIR3179-2, MIR3180-4, COQ7, NTAN1, FOPNL, ITPRIPL2, PDXDC1, SMG1, ARL6IP1, MPV17L, NOMO2, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, RRN3, NDE1, MIR484, RPS15A, XYLT1, ABCC6P1, TMC7, C16orf45, KIAA0430) 0.109140186853212 41 0.0636445445327444 0.585940735297972 2079 0.190238421992527 2 2 0 -7.80224582241921 LTS-025 chr16 19126471 19222713 96243 * c(ITPRIPL2, SYT17) 0.028 1 NA 0.749885103514782 73 0.325044522181661 2 2 0 -5.77633148569498 LTS-025 chr16 19222714 28608392 9385679 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, PDILT, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NDUFAB1, NA NA NA NA NA NA NA NA NA LTS-025 IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, LOC81691, DCTN5, COG7, CCP110, HS3ST4, HS3ST2) 0.0485023707962584 176 0.0816330393706073 0.595413838954046 7553 0.298212919098682 2 2 0 -7.13887251841447 LTS-025 NA NA NA NA LTS-025 chr16 28608393 28631399 23007 * SULT1A1 0.075693928277825 5 0.0492747399790197 0.319173858682778 54 0.411057711274953 1 1 0 -6.76925592933716 LTS-025 chr16 28631400 28634378 2979 * SULT1A1 NA 0 NA 0.55 1 NA NA NA NA NA LTS-025 chr16 28634379 31512077 2877699 * c(ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, NA NA NA NA NA NA NA NA NA LTS-025 KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, ATP2A1, TRIM72, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A1, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.0714224756002369 118 0.0612031696347903 0.585895837575411 6415 0.207838238346542 2 2 0 -7.17540973189388 LTS-025 NA NA NA NA LTS-025 chr16 31512078 31518980 6903 * C16orf58 NA 0 NA 0.329 1 NA NA NA NA NA LTS-025 chr16 31518981 32889059 1370079 * c(CLUHP3, ZNF267, ZNF720, SLC6A10P, LOC390705, YBX3P1, NA, AHSP, C16orf58, TP53TG3D) 0.0349472939486531 6 0.0917120493719337 0.531664660922374 312 0.307298593204459 2 2 0 -7.06581169182766 LTS-025 chr16 32889060 33424787 535728 * c(SLC6A10P, LOC390705) 0.46 1 NA 0.501226553437601 79 0.225886435895239 2 2 0 -6.14846103207692 LTS-025 chr16 33424788 33961138 536351 * LINC00273 0.317659982479388 6 0.177577494820337 0.542555665943608 96 0.331161448773115 2 1 1 -6.87099030834571 LTS-025 chr16 33961139 33961169 31 * LINC00273 0.318 1 NA 0.945 1 NA NA NA NA NA LTS-025 chr16 33961170 33961918 749 * LINC00273 0.312745380139555 28 0.122674322569923 1.25848677429213 47 0.650949695454995 16 11 5 -6.73538222468578 LTS-025 chr16 33961919 33961936 18 * LINC00273 0.397 1 NA 0.66 1 NA NA NA NA NA LTS-025 chr16 33961937 34489992 528056 * c(UBE2MP1, LINC00273) 0.340608402388681 15 0.145935830647126 0.727943344290599 118 0.328665228559618 2 1 1 -6.79539519083028 LTS-025 chr16 34489993 34682380 192388 * LINC01566 NA 0 NA 0.609130233123386 35 0.157432482527024 2 NA NA -5.78115893766011 LTS-025 chr16 46508169 46509809 1641 * ANKRD26P1 0 1 NA 0.714620164820604 7 0.593834953822148 2 2 0 -5.76443785271651 LTS-025 chr16 46509810 55850831 9341022 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.0516555971271634 92 0.0692038265776951 0.600900765722466 4710 0.252178053566361 2 2 0 -7.1771360319445 LTS-025 chr16 55850832 55862647 11816 * CES1 0.355 1 NA 0.575599321155567 29 0.211635974527692 2 2 0 -5.76656384525455 LTS-025 chr16 55862648 55895374 32727 * c(CES1, CES5A) 0.293353917782297 9 0.152865136640112 0.57792567377431 51 0.437337356210574 3 2 1 -6.7919215287711 LTS-025 chr16 55895375 56227965 332591 * c(CES5A, DKFZP434H168, GNAO1, LOC283856) 0.13 1 NA 0.640695287803572 83 0.172237856536285 2 2 0 -5.76502104452763 LTS-025 chr16 56227966 58768129 2540164 * c(MIR3935, KATNB1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, DKFZP434H168, AMFR, GNAO1, GOT2, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, POLR2C, SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, MT1IP, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, NA NA NA NA NA NA NA NA NA LTS-025 USB1, SETD6, FAM192A, NLRC5, DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.0785113651313576 114 0.068312007949243 0.589405304898104 4232 0.224983403076383 2 2 0 -7.08741160364501 LTS-025 NA NA NA NA LTS-025 chr16 58768130 61687642 2919513 * c(CDH8, GOT2, APOOP5) 0 1 NA 0.670181339642709 61 0.453175917904191 2 2 0 -5.77511861996923 LTS-025 chr16 61687643 70161298 8473656 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NA NA NA NA NA NA NA NA NA LTS-025 NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.052257609542637 134 0.0539578175789317 0.594252580681869 7309 0.225190755599851 2 2 0 -7.38020112887116 LTS-025 NA NA NA NA LTS-025 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.496 1 NA NA NA NA NA LTS-025 chr16 70162673 70219827 57155 * c(CLEC18C, PDPR) 0.0701290962137202 5 0.0176295206968312 0.421173051139219 115 0.267562135330086 1 1 0 -7.29188147982129 LTS-025 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 0.682 1 NA NA NA NA NA LTS-025 chr16 70237374 70789171 551798 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.0430585323460076 32 0.0617224536965486 0.580930585913678 1116 0.214272971377068 2 2 0 -6.82211489979871 LTS-025 chr16 70789172 70868083 78912 * c(VAC14-AS1, HYDIN, VAC14) NA 0 NA 0.638055132723078 139 0.157379662435348 2 NA NA -5.76476678602958 LTS-025 chr16 70868084 70869685 1602 * HYDIN NA 0 NA 1.123 1 NA NA NA NA NA LTS-025 chr16 70869686 70889147 19462 * HYDIN 0.356 1 NA 0.758325344711606 26 0.373648878782454 2 2 0 -5.76652452007932 LTS-025 chr16 70889148 71167220 278073 * HYDIN 0.347254553637186 80 0.111055835398008 0.810152743787475 525 0.454415374862766 3 2 1 -6.76531022337086 LTS-025 chr16 71167221 71209748 42528 * HYDIN NA 0 NA 0.76430060105604 21 0.0642219736909565 2 NA NA -5.931927225681 LTS-025 chr16 71209749 71212772 3024 * HYDIN NA 0 NA 0.609 1 NA NA NA NA NA LTS-025 chr16 71212773 71318001 105229 * c(HYDIN, CMTR2) 0.123 1 NA 0.578552182330697 61 0.186256691668398 2 2 0 -5.78697367240682 LTS-025 chr16 71318002 87425653 16107652 * c(LOC100129617, SYCE1L, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4719, MIR5093, CDH13, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, COX4I1, SLC38A8, FLJ30679, LOC146513, CTRB1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LINC00311, LDHD, MLKL, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NA NA NA NA NA NA NA NA NA LTS-025 NUDT7, OSGIN1, HP, HPR, HSBP1, HSD17B2, FAM92B, IRF8, ATXN1L, PKD1L3, KARS, LOC400548, FENDRR, C16orf74, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, GINS2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, TXNL4B, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, VAT1L, TLDC1, WFDC1, MTHFSD, TAT, SNORD71, LINC00917, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, CRISPLD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ZNRF1, CNTNAP4, MBTPS1, TAF1C, USP10, MARVELD3, KCNG4, SDR42E1, BCAR1, KIAA0513, DHX38, IST1, ATP2C2) 0.078323736006739 277 0.0741284595457342 0.592952923742948 8361 0.248113304251235 2 2 0 -7.82156032403815 LTS-025 NA NA NA NA LTS-025 chr16 87425654 87437846 12193 * c(FBXO31, MAP1LC3B) 0 1 NA 0.55340381541867 53 0.17358564680854 2 2 0 -5.77031214921085 LTS-025 chr16 87437847 90109711 2671865 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR4722, MIR5189, CDH15, TUBB3, RNF166, SPATA2L, SPATA33, ZC3H18, SLC22A31, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, TCF25, ZCCHC14, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MC1R, MVD, CHMP1A, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, SPG7, GAS8-AS1, CA5A, DBNDD1, SLC7A5, CDT1, MAP1LC3B, SPIRE2, NA NA NA NA NA NA NA NA NA LTS-025 ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, PIEZO1) 0.0426711786644217 106 0.0626710123992604 0.587387254030458 4376 0.453935738551437 2 2 0 -6.81203058249845 LTS-025 NA NA NA NA LTS-025 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.583036982400172 119 0.13236931972279 2 NA NA -5.78337457565223 LTS-025 chr17 6004 63759 57756 * c(DOC2B, RPH3AL) 0 1 NA 0.605080505921392 59 0.0958953440350359 2 2 0 -5.78113963588634 LTS-025 chr17 63760 260490 196731 * c(LOC100506388, C17orf97, RPH3AL) 0.0458720131251203 3 0.0586031853514238 0.592745403000521 60 0.302747827696816 2 2 0 -6.74540559617603 LTS-025 chr17 260491 262898 2408 * C17orf97 NA 0 NA 0.943 1 NA NA NA NA NA LTS-025 chr17 262899 295699 32801 * c(RFLNB, C17orf97) 0.034566286712094 2 0.0961665222413705 1.05627916941267 91 0.422955103451914 3 3 0 -6.73454777499037 LTS-025 chr17 295700 422333 126634 * c(RFLNB, VPS53) NA 0 NA 0.602 1 NA NA NA NA NA LTS-025 chr17 422334 5323606 4901273 * c(C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, PRPF8, KIF1C, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, ENO3, RAP1GAP2, CAMTA2, ZZEF1, CLUH, SMG6, SHPK, ALOX15, RNF167, OR1A2, PELP1, GP1BA, LOC284009, VMO1, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, SMTNL2, ITGAE, GLTPD2, INCA1, SCIMP, OR3A4P, NA NA NA NA NA NA NA NA NA LTS-025 MED11, MIR132, MIR212, MIR22, ARRB2, MNT, ASPA, MYO1C, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, GLOD4, ANKFY1, SERPINF1, INPP5K, PFN1, PITPNA, PLD2, SERPINF2, SLC52A1, MRM3, VPS53, NCBP3, TSR1, PSMB6, CXCL16, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, BHLHA9, TLCD2, UBE2G1, TRPV1, YWHAE, ZNF232, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, ZNF594, SPATA22, MIR22HG, SCARF1, TM4SF5, USP6, RABEP1, SPAG7, SGSM2) 0.095957141132949 225 0.0757222438540071 0.582878345845484 7887 0.223184596969425 2 2 0 -7.52887512641859 LTS-025 NA NA NA NA LTS-025 chr17 5323607 5324550 944 * RPAIN NA 0 NA 0.323 1 NA NA NA NA NA LTS-025 chr17 5324551 5338361 13811 * c(C1QBP, RPAIN) 0.166061888785932 10 0.0920531247583578 0.372558249780636 79 0.204073458113479 1 1 0 -7.13965803935297 LTS-025 chr17 5338362 5341541 3180 * C1QBP NA 0 NA 0.55 1 NA NA NA NA NA LTS-025 chr17 5341542 7490810 2149269 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4520-2, ALOX15P1, CLEC10A, GABARAP, CHRNB1, CLDN7, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EIF5A, SLC16A13, C17orf74, FGF11, NLRP1, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12P2, TMEM256, BCL6B, SENP3, SNORA67, SLC13A5, TMEM102, GPS2, LOC339166, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, MED31, DERL2, YBX2, NA NA NA NA NA NA NA NA NA LTS-025 POLR2A, FAM64A, XAF1, DHX33, PLSCR3, MIR497, NLGN2, ZBTB4, SLC35G6, SLC2A4, SNORA48, SNORD10, C1QBP, LOC728392, MIS12, PHF23, PITPNM3, TEKT1, NEURL4, TXNDC17, TNK1, TNFSF13, TNFSF12, MPDU1, CD68, ACAP1, KIAA0753) 0.0979678434974073 116 0.0790544969831152 0.592411798267048 3958 0.197606223953972 2 2 0 -7.1934653162237 LTS-025 NA NA NA NA LTS-025 chr17 7490811 7496965 6155 * c(SOX15, FXR2, MPDU1) 0 1 NA 0.613192879690317 71 0.161683886876998 2 2 0 -5.76481295053326 LTS-025 chr17 7496966 16638666 9141701 * c(MIR744, LOC100128288, LINC00675, MIR1288, MIR4314, NA, MAGOH2P, TVP23C-CDRT4, MIR4731, MIR4521, COX10-AS1, TMEM220-AS1, TRIM16, CHD3, SAT2, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, DNAH2, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, USP32P1, DNAH9, EFNB3, DHRS7C, TVP23C, CENPV, ARHGEF15, KDM6B, PIK3R5, ALOX12B, ALOX15B, SNORD49A, LOC284023, LINC00324, LINC00670, CDRT4, NA NA NA NA NA NA NA NA NA LTS-025 RANGRF, GUCY2D, TBC1D26, CDRT1, SPDYE4, TMEM220, SHISA6, LRRC75A, SLC25A35, MEIS3P1, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, TRPV2, PER1, PFAS, PMP22, BORCS6, TTC19, WRAP53, ADPRM, ZNF286A, ZNF287, ZNF624, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, RNF222, PIRT, CDRT15P2, TEKT3, SHBG, SCARNA21, VAMP2, SNORD49B, SNORD65, TP53, UBB, ZNF18, CTC1, NDEL1, TMEM107, NAA38, HES7, MGC12916, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 GAS7, MYH13, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, FXR2, NCOR1, CCDC144A, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.0623701490131682 202 0.0682668698847825 0.59812220216932 8780 0.23064116680196 2 2 0 -7.3270972012627 LTS-025 NA NA NA NA LTS-025 chr17 16638667 16734803 96137 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) NA 0 NA 1.09711204531652 39 0.333902821891245 4 NA NA -5.77169705390939 LTS-025 chr17 16734804 16734809 6 * KRT16P2 0.237 1 NA 0.289 1 NA NA NA NA NA LTS-025 chr17 16734810 18315317 1580508 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, KRT16P2, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.0811654831918897 81 0.0735830806169898 0.602259687825419 2726 0.235511058044628 2 2 0 -6.926625365051 LTS-025 chr17 18315318 18315385 68 * character(0) NA 0 NA 0.976 1 NA NA NA NA NA LTS-025 chr17 18315386 18456685 141300 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) NA 0 NA 0.150102081348263 66 0.109487502879156 1 NA NA -8.76465952405073 LTS-025 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.654 1 NA NA NA NA NA LTS-025 chr17 18483256 21102170 2618915 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, TMEM11, SPECC1, ULK2) 0.103614673773455 55 0.113428857544744 0.584706990126063 2534 0.23340444019609 2 2 0 -7.14610917129538 LTS-025 chr17 21102171 21194769 92599 * c(NATD1, MAP2K3, TMEM11) 0.377 1 NA 0.50168544066937 41 0.1561327765155 2 2 0 -5.90808172024521 LTS-025 chr17 21194770 21202123 7354 * MAP2K3 0.437536714371611 4 0.0322955105239103 0.679023826337493 24 0.378337630059238 2 1 1 -8.68404643718285 LTS-025 chr17 21202124 21318663 116540 * c(KCNJ12, MAP2K3) 0.397058730397502 46 0.061202207026606 0.807108957538679 124 0.411064851042256 2 1 1 -6.88186033018633 LTS-025 chr17 21318664 21318782 119 * KCNJ12 0.332 1 NA 0.901239943981331 4 0.380359917271348 3 3 0 -5.76441105297245 LTS-025 chr17 21318783 21320365 1583 * KCNJ12 0.278857361697117 32 0.126401242848116 1.0601396019623 72 0.850352949712357 11 8 3 -6.73478880444242 LTS-025 chr17 21320366 21320422 57 * KCNJ12 NA 0 NA 0.672 1 NA NA NA NA NA LTS-025 chr17 21320423 22066835 746413 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.300719079173772 13 0.194595998324998 0.619490457142735 207 0.415129583592834 2 1 1 -6.8096218032963 LTS-025 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.492 1 NA NA NA NA NA LTS-025 chr17 25620838 25909850 289013 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.116 1 NA 0.593209890544773 95 0.155986733866112 2 2 0 -5.81730959834639 LTS-025 chr17 25909851 34433730 8523880 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, RFFL, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, TMEM199, PROCA1, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, LYRM9, RDM1, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, GAS2L2, NA NA NA NA NA NA NA NA NA LTS-025 HEATR9, TMEM98, POLDIP2, TBC1D29, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LGALS9, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RAD51D, RPL23A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, SNORD7, MIR632, TNFAIP1, VTN, ZNF207, MMP28, TEFM, ATAD5, TAF15, RAB34, NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, ZNF830, SLFN11, RASL10B, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.0562511737294833 173 0.0771589155733366 0.582948393949095 10136 0.246990859460273 2 2 0 -7.52943658029149 LTS-025 NA NA NA NA LTS-025 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.094 1 NA NA NA NA NA LTS-025 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.299812616779367 39 0.32017723667992 1 NA NA -5.7801018101427 LTS-025 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.652 1 NA NA NA NA NA LTS-025 chr17 34842415 36214044 1371630 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0174318161800291 20 0.0420561967397258 0.568699645489062 1527 0.225952481665688 2 2 0 -7.32305285429136 LTS-025 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.23 1 NA NA NA NA NA LTS-025 chr17 36214814 36385038 170225 * c(YWHAEP7, LOC440434) 0.341 1 NA 0.390034039576591 71 0.391574889599665 1 1 0 -5.77121339125907 LTS-025 chr17 36385039 36398156 13118 * LOC440434 NA 0 NA 0.598 1 NA NA NA NA NA LTS-025 chr17 36398157 36625579 227423 * c(SOCS7, LOC440434, GPR179, ARHGAP23, MRPL45) 0.00900766682506176 7 0.0260795486376367 0.659300294863486 377 0.221408960594882 3 3 0 -7.6280914276156 LTS-025 chr17 36625580 36626046 467 * ARHGAP23 NA 0 NA 0.537 1 NA NA NA NA NA LTS-025 chr17 36626047 38100129 1474083 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, STARD3, ZPBP2, ERBB2, IKZF3, CISD3, GRB7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, NEUROD2, FBXO47, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, MIEN1, FBXL20, TCAP, PGAP3, RPL23, ORMDL3) 0.0455817561142741 53 0.0563599642769105 0.587720573332011 2871 0.212824201239648 2 2 0 -6.91042414382661 LTS-025 chr17 38100130 38100633 504 * LRRC3C 0.097 1 NA 0.807820073166343 11 0.366701810987917 3 3 0 -5.76446250153908 LTS-025 chr17 38100634 39389677 1289044 * c(KRTAP4-9, KRTAP4-7, LRRC3C, SNORD124, CCR7, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, CASC3, KRT23, GSDMA, MSL1, KRT27, IGFBP4, KRT26, KRT10, KRT12, KRT39, RAPGEFL1, KRT20, PSMD3, RARA, KRTAP4-11, SMARCE1, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP4-4, TNS4, NA NA NA NA NA NA NA NA NA LTS-025 KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, NR1D1, MED24, CDC6) 0.0832485317475437 71 0.0665731228357558 0.580067166384219 2910 0.222320328373242 2 2 0 -7.06175872833112 LTS-025 NA NA NA NA LTS-025 chr17 39389678 39394748 5071 * c(KRTAP9-3, KRTAP9-8) NA 0 NA 0.787 1 NA NA NA NA NA LTS-025 chr17 39394749 39432306 37558 * c(KRTAP9-7, KRTAP9-6, KRTAP9-9, KRTAP9-8, KRTAP9-4) 0.0609757784063374 8 0.0595409522933586 0.962983470271917 49 0.610435280183343 2 2 0 -6.7639944878007 LTS-025 chr17 39432307 39432417 111 * KRTAP9-7 NA 0 NA 0.649 1 NA NA NA NA NA LTS-025 chr17 39432418 41246481 1814064 * c(RAMP2-AS1, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP29-1, MIR5010, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, RAMP2, VAT1, P3H4, NT5C3B, CNTD1, CNP, RUNDC1, LINC00974, FAM134C, ZNF385C, EZH1, KCNH4, GAST, G6PC, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, IFI35, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, KRT33B, KRT34, NA NA NA NA NA NA NA NA NA LTS-025 KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, RPL27, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, HSPB9) 0.073280556185705 92 0.0724403407105125 0.589767409745343 4613 0.199243917732013 2 2 0 -7.02108523619821 LTS-025 NA NA NA NA LTS-025 chr17 41246482 41267721 21240 * BRCA1 0 1 NA 0.58995098037083 39 0.183903633892059 2 2 0 -5.76760073931974 LTS-025 chr17 41267722 41466073 198352 * c(LINC00910, LINC00854, NBR2, TMEM106A, NBR1, BRCA1) 0.331741173256379 9 0.142435072927984 0.539626137464806 221 0.259970906276535 2 1 1 -6.82981841283846 LTS-025 chr17 41466074 41522200 56127 * c(LINC00910, MIR2117, ARL4D) 0 1 NA 0.691954335452948 23 0.22335803159206 2 2 0 -5.76747823109816 LTS-025 chr17 41522201 44337264 2815064 * c(MAP3K14-AS1, HDAC5, MIR2117, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, NA NA NA NA NA NA NA NA NA LTS-025 EFTUD2) 0.0601815951807122 70 0.07019529102431 0.602238541955698 4052 0.236232750843265 2 2 0 -6.89693778298931 LTS-025 NA NA NA NA LTS-025 chr17 44337265 44337269 5 * character(0) NA 0 NA 0.426 1 NA NA NA NA NA LTS-025 chr17 44337270 44782233 444964 * character(0) 0.101 1 NA 0.408061080750159 62 0.207369970982181 1 1 0 -5.89443856906345 LTS-025 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.945 1 NA NA NA NA NA LTS-025 chr17 44788332 45196190 407859 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.0310607758256816 5 0.0305204849240637 0.920893627069616 221 0.367859187039143 3 3 0 -6.74637841980961 LTS-025 chr17 45196191 45214482 18292 * CDC27 0.36 1 NA 0.951814924038975 69 0.266610594062117 3 3 0 -5.76442978090979 LTS-025 chr17 45214483 45249372 34890 * CDC27 0.298867316557043 13 0.145200347884022 0.831529540871271 79 0.237100832155632 3 2 1 -6.76646728361033 LTS-025 chr17 45249373 45266610 17238 * CDC27 0.115 1 NA 0.78841902896163 17 0.337290261626741 3 3 0 -5.76725880752217 LTS-025 chr17 45266611 46507501 1240891 * c(MIR1203, CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, ITGB3, KPNB1, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.056854689205049 30 0.0254324437560038 0.968359532642585 1481 0.272470914747204 3 3 0 -7.13796489483661 LTS-025 chr17 46507502 46606518 99017 * SKAP1 NA 0 NA 1.325 1 NA NA NA NA NA LTS-025 chr17 46606519 46628578 22060 * c(HOXB-AS1, HOXB1, HOXB2, HOXB3) 0.0371022226111331 5 0.00433589667773576 1.7032906148502 140 0.48355689011894 3 3 0 -6.83677763761238 LTS-025 chr17 46628579 80363278 33734700 * c(SNORA38B, LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, TOM1L1, MIR4316, MIR3065, MIR3186, MIR3185, LINC00674, LINC00673, MIR3614, MIR3678, MIR3615, C17orf112, TSPOAP1-AS1, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4729, MIR4737, MIR4736, MIR4738, MIR4740, MIR4524A, MIR4730, MIR3064, MIR5047, CEP295NL, MIR4524B, HOXB-AS1, LOC100996291, DNAH17-AS1, TOB1, CDK3, NA NA NA NA NA NA NA NA NA LTS-025 ALYREF, SLC35B1, DCAF7, CALCOCO2, ABCA10, ABCA9, ABCA8, BAIAP2, ATP5H, HOXB13, APPBP2, ST6GALNAC2, IGF2BP1, GNA13, SEPT9, CD300C, CHAD, TLK2, KAT7, POLG2, NXPH3, SNF8, CD300A, TMC6, DDX42, CYGB, RNF157, C1QTNF1, PPP1R27, FTSJ3, CLTC, METTL23, HSF5, OR4D2, MSI2, SLC38A10, CANT1, USH1G, CD300LB, KIF19, C17orf64, WFIKKN2, FLJ40194, B4GALNT2, TBC1D16, AFMID, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, TCAM1P, EFCAB3, SLC25A10, LOC146880, EME1, NOTUM, TMC8, AANAT, CYB561, ANKFN1, MARCH10, TMEM92, PHOSPHO1, ACE, DDX5, DLX3, DLX4, CEP112, SAMD14, CENPX, LRRC45, SLC39A11, AMZ2P1, TRIM65, UNC13D, ERN1, EVPL, BPTF, FASN, FDXR, ZNF652, PPM1E, ARSG, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, MMD, WBP2, CDC42EP4, MTVR2, STXBP4, CACNA1G-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 GAA, TAC4, MYADML2, NPB, FSCN2, GALK1, NOL11, TANC2, NAT9, PITPNC1, GCGR, OR4D1, GH1, GH2, GIP, CACNG5, CACNG4, GNGT2, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, C17orf58, MILR1, TTLL6, LOC284080, C17orf47, SLC26A11, ENDOV, GDPD1, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, HLF, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, RAB37, BIRC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ICAM2, METTL2A, C17orf67, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, NACA2, OTOP3, SKA2, MCRIP1, APOH, GPR142, ZACN, PRAC2, ITGA3, ITGB4, HILS1, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, TOB1-AS1, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, LPO, CUEDC1, HOXB-AS3, MIR10A, MIR142, MIR196A1, MIR21, MIR301A, MAFG, MAP3K3, MPO, MXRA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 TBC1D3P2, PLEKHM1P1, LOC440461, BAIAP2-AS1, MIR338, TRIM37, NGFR, NME1, NME2, NPTX1, P4HB, ACOX1, MRPS7, UTP18, RNFT1, HN1, TUBD1, DCXR, TACO1, ABI3, MRPL27, AMZ2, PDE6G, ANAPC11, SIRT7, ATP5G1, PDK2, MRPS23, PTRH2, LUC7L3, PECAM1, PHB, SEPT4, SDK2, FAM20A, MBTD1, BCAS3, TMEM104, RNF43, MKS1, LINC00483, C17orf80, CCDC40, EPN3, WIPI1, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, NPLOC4, PRKAR1A, PRR11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 PRKCA, ST6GALNAC1, TEX2, GPRC5C, MAP2K6, TEX14, PRPSAP1, CA10, CCDC47, PSMC5, PSMD12, CBX8, MIF4GD, INTS2, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, PCTP, RAC3, RAD51C, SCPEP1, RFNG, SLC25A19, RPL38, MRPL12, RPS6KB1, SCN4A, UBE2O, HEATR6, SEC14L1, SECTM1, DUS1L, XYLT2, SRSF1, SRSF2, CPSF4L, SMIM5, SGCA, DNAI2, SGSH, WFDC21P, SMURF2, ENGASE, SPATA20, MRPL38, UBE2Z, TBC1D3P1-DHX40P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 LOC653653, NME1-NME2, SNHG20, SMARCD2, SUMO2, SOX9, SRP68, SSTR2, SCARNA20, SCARNA16, SNORA50C, SNORD1A, SNORD1B, SNORD1C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, MIR636, TIMP2, TK1, ACTG1, MIR657, FLJ45513, LOC729683, CA4, PRCD, MIR454, TRIM25, VEZF1, CACNG1, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, DHX40, OGFOD3, NUP85, MYO15B, ACSF2, FAAP100, LIMD2, KCNH6, FAM117A, COIL, AKAP1, VMP1, EPX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 AXIN2, TSPAN10, BRIP1, SPOP, MYCBPAP, QRICH2, PRAC1, KIF2B, USP32, PPP1R9B, CBX2, FAM104A, PPM1D, MGC16275, DGKE, FBF1, CBX4, UNK, DNAH17, ABCC3, RGS9, GALR2, SPHK1, CACNA1G, SOCS3, SPAG9, CEP95, MTMR4, TRIM47, SLC16A6, SLC16A5, SLC16A3, ANKRD40, SYNGR2, HGS, STRADA, PRR29, CD7, NOG, TSPOAP1, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, TBX4, AATK, CD79B, TMEM94, EIF4A3, MRC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 HELZ, MED13) 0.0396279066888523 670 0.0423283069840893 1.03161846897344 30108 0.423007798228199 3 3 0 -7.56651330141048 LTS-025 NA NA NA NA LTS-025 chr17 80363279 80363377 99 * OGFOD3 NA 0 NA 1.16 1 NA NA NA NA NA LTS-025 chr17 80363378 80386556 23179 * c(HEXDC, OGFOD3) 0 1 NA 2.02991650047595 38 0.80426963412852 7 7 0 -5.76444924620976 LTS-025 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.857 1 NA NA NA NA NA LTS-025 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0541206076820416 27 0.0301164406927512 1.00930115940836 877 0.362664337874169 3 3 0 -6.96942255296098 LTS-025 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.2326843989513 13 0.192091824997237 4 NA NA -5.76441279326024 LTS-025 chr18 116845 116890 46 * ROCK1P1 0 1 NA 3.936 1 NA NA NA NA NA LTS-025 chr18 116891 580623 463733 * c(CETN1, ROCK1P1, COLEC12, USP14, THOC1) 0.41538863789466 8 0.167843251704849 1.03628811166013 284 0.266093954991641 4 2 2 -6.89869453232609 LTS-025 chr18 580624 658064 77441 * c(CETN1, CLUL1, TYMSOS, TYMS) 0.43 1 NA 0.954756523204803 77 0.186734616005614 3 3 0 -5.76468513075999 LTS-025 chr18 658065 693977 35913 * c(TYMSOS, ENOSF1, TYMS) 0.452458727484455 11 0.0258998069490875 0.956053131549116 129 0.231968808465223 4 2 2 -10.1591483490285 LTS-025 chr18 693978 911966 217989 * c(ADCYAP1, ENOSF1, YES1) 0 1 NA 0.971095583390744 203 0.569463003302174 3 3 0 -5.7648061157492 LTS-025 chr18 911967 2891202 1979236 * c(NDC80, ADCYAP1, SMCHD1, LINC00470, CBX3P2, METTL4, EMILIN2) 0.21219468324408 10 0.236752097256931 0.982765276219597 432 0.437688381544652 3 2 1 -6.88999238080854 LTS-025 chr18 2891203 2891478 276 * EMILIN2 0.459 1 NA 0.91754210467284 7 0.129782418649354 3 3 0 -5.76441645058231 LTS-025 chr18 2891479 5133025 2241547 * c(DLGAP1-AS4, MYL12B, MYL12A, DLGAP1-AS3, DLGAP1-AS5, DLGAP1-AS1, TGIF1, LOC727896, EMILIN2, MYOM1, DLGAP1, LPIN2) 0.422366353363221 28 0.12436894145197 0.99023436933793 849 0.364409851148061 3 2 1 -7.07202375984693 LTS-025 chr18 5133026 5840810 707785 * c(MIR3976, LINC00526, EPB41L3, LINC00667, AKAIN1, MIR3976HG, ZBTB14) 0.465589683505529 7 0.0258677957534626 1.11613814091001 253 0.298530190606507 4 2 2 -10.8043683016922 LTS-025 chr18 5840811 5890497 49687 * c(MIR3976, TMEM200C) 0 1 NA 1.20419925424674 11 1.139065127039 4 4 0 -5.76442521319485 LTS-025 chr18 5890498 6913573 1023076 * c(LINC01387, MIR4317, TMEM200C, ARHGAP28, L3MBTL4) 0.301785759790646 13 0.218648705484977 1.12904186399848 379 0.366746664317288 4 3 1 -6.78766129170189 LTS-025 chr18 6913574 6941748 28175 * c(LAMA1, LINC00668, ARHGAP28) 0 1 NA 1.08205141674454 59 0.446917915312722 4 4 0 -5.76589727047411 LTS-025 chr18 6941749 8406680 1464932 * c(LOC100192426, LAMA1, LRRC30, PTPRM) 0.0874056012668571 14 0.198539447183455 1.12054402987309 590 0.523695146410502 4 4 0 -6.81663480382968 LTS-025 chr18 8406681 8546022 139342 * PTPRM NA 0 NA 1.17769630749401 14 0.449658234076201 4 NA NA -5.76535759364368 LTS-025 chr18 8546023 8784723 238701 * c(RAB12, MTCL1) 0.469 1 NA 1.00279645232827 87 0.274330911633718 3 3 0 -5.77206376253355 LTS-025 chr18 8784724 9959493 1174770 * c(RALBP1, RAB31, ANKRD12, MTCL1, NDUFV2, TWSG1, TXNDC2, VAPA, PPP4R1) 0.41984101716935 31 0.143681981570262 1.02466495668306 933 0.324577270735012 3 2 1 -7.00612187355739 LTS-025 chr18 9959494 10455077 495584 * c(APCDD1, VAPA) 0.413 1 NA 1.13555251968789 19 0.431344098132978 4 4 0 -5.77574946884418 LTS-025 chr18 10455078 11882268 1427191 * c(APCDD1, GNAL, CHMP1B, PIEZO2, NAPG) 0.112900449636925 9 0.226371989825989 1.09730201660903 594 0.372293150736386 4 4 0 -6.90187276477964 LTS-025 chr18 11882269 11882676 408 * GNAL 0.5 1 NA 0.866403347509857 7 0.284878002293045 3 3 0 -5.76443073402001 LTS-025 chr18 11882677 12448430 565754 * c(PRELID3A, AFG3L2, CIDEA, GNAL, ANKRD62, IMPA2, C18orf61, SPIRE1, MPPE1, TUBB6) 0.31914792884368 19 0.208390546529925 1.11176937487689 538 3.22956196372931 3 2 1 -6.73560716613133 LTS-025 chr18 12448431 12449333 903 * SPIRE1 0 1 NA 1.31616104869168 21 0.570275985817394 4 4 0 -5.7644167998783 LTS-025 chr18 12449334 13001510 552177 * c(CEP192, SPIRE1, PSMG2, PTPN2, CEP76, SEH1L) 0.0778855201642096 10 0.192010676786475 0.998102857013975 378 0.329938182671204 3 3 0 -6.77265902881216 LTS-025 chr18 13001511 13001512 2 * CEP192 0.494 1 NA 0.707 1 NA NA NA NA NA LTS-025 chr18 13001513 15004114 2002602 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, CEP192, LDLRAD4, RNMT) 0.236233202426207 18 0.209883690168371 1.0240278021607 783 0.509946572792344 3 2 1 -6.88358322403716 LTS-025 chr18 15004115 15006193 2079 * character(0) NA 0 NA 1.20472794415819 29 0.638918667781283 4 NA NA -5.76441207092182 LTS-025 chr18 18529727 18529837 111 * ROCK1 0.448 1 NA 0.850458309886657 3 0.307722277386607 3 3 0 -5.76441728902553 LTS-025 chr18 18529838 20876027 2346190 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, CABLES1) 0.254037227302797 21 0.231170046667362 1.01649933549433 1091 0.308992505789562 3 2 1 -6.88362370061102 LTS-025 chr18 20876028 20953720 77693 * TMEM241 0.484 1 NA 1.02083163891454 67 0.353813469933107 3 3 0 -5.76686935138857 LTS-025 chr18 20953721 22040699 1086979 * c(MIR320C2, OSBPL1A, TTC39C, ANKRD29, CABYR, C18orf8, LAMA3, NPC1, IMPACT, HRH4, TMEM241, RIOK3) 0.443501918235935 25 0.0960698530584213 1.01305661949171 1356 0.283604607252513 4 2 2 -7.38231667408325 LTS-025 chr18 22040700 22040723 24 * HRH4 NA 0 NA 1.302 1 NA NA NA NA NA LTS-025 chr18 22040724 22807567 766844 * c(ZNF521, HRH4, LOC729950) 0.38068195895183 4 0.234448288541418 1.17656379485127 154 0.233104258847286 4 2 2 -6.75479714148575 LTS-025 chr18 22807568 23749196 941629 * c(PSMA8, ZNF521, SS18) 0 1 NA 1.07789206046712 133 0.417916621830791 3 3 0 -5.82337042090232 LTS-025 chr18 23749197 24722820 973624 * c(PSMA8, AQP4-AS1, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.236834521545691 2 0.304763022691402 1.1464907063452 371 0.285881753695883 4 3 1 -6.77745309087299 LTS-025 chr18 25530918 77926862 52395945 * c(CDH2, ZSCAN30, SNORD58C, PARD6G-AS1, LOC100131655, LINC01630, MIR302F, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, HAUS1, ALPK2, LOXHD1, INO80C, FAM69C, STARD6, C18orf25, NA NA NA NA NA NA NA NA NA LTS-025 CCBE1, CBLN2, SLC25A52, DSG4, CYB5A, C18orf54, TCEB3C, DCC, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, TPGS2, SETBP1, KCNG2, SNORD58B, SNORD58A, SALL3, CDH20, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 GRP, ST8SIA5, RAX, CXXC1, LOC339298, CPLX4, CCDC178, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 ZNF532, ELP2, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, GAREM1, MIR924HG, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, TTR, ZNF24, ZNF236, CCDC102B, RBFA, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, PARD6G, CNDP1, SERPINB7, NOL4, TNFRSF11A, MBD2, SERPINB12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.0615315757660036 433 0.0669550243083371 0.608501407175689 17524 0.328820060745414 2 2 0 -7.67775427098104 LTS-025 NA NA NA NA LTS-025 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.459539725461989 19 0.140520585992656 1 NA NA -5.92753808704034 LTS-025 chr19 107416 107456 41 * character(0) 0.403 1 NA 3.224 1 NA NA NA NA NA LTS-025 chr19 107457 1778023 1670567 * c(MED16, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CIRBP-AS1, C19orf25, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, LINC01002, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, RPS15, STK11, BSG, TCF3, NA NA NA NA NA NA NA NA NA LTS-025 PLPPR3, OR4F17, MADCAM1, KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.0902244498141149 114 0.0675673354679062 0.578372755850256 3356 0.212502926134705 2 2 0 -7.20699775491533 LTS-025 NA NA NA NA LTS-025 chr19 1778024 1778362 339 * character(0) 0 1 NA 0.355504476585697 9 0.0916651515026294 1 1 0 -5.76441184700171 LTS-025 chr19 1778363 3942052 2163690 * c(C19orf71, LOC100288123, MIR1909, MIR1227, MIR4321, HMG20B, IZUMO4, SCAMP4, ADAT3, ZNF554, MRPL54, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, CSNK1G2, ATP8B3, DIRAS1, ZNF555, AES, ZFR2, PIP5K1C, CSNK1G2-AS1, TIMM13, AMH, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MKNK2, SLC39A3, TMPRSS9, C19orf35, CACTIN-AS1, MATK, GADD45B, NFIC, OAZ1, FZR1, LSM7, PLEKHJ1, BTBD2, NCLN, SPPL2B, REXO1, ZNF77, CACTIN, CELF5, NA NA NA NA NA NA NA NA NA LTS-025 SGTA, LINGO3, TBXA2R, THOP1, TLE2, TLE6, ZNF556, SF3A2, ABHD17A, DOHH, KLF16, DOT1L, LMNB2, RAX2, ATCAY, S1PR4, AP3D1, APBA3) 0.0640521491792385 124 0.0641908108839632 0.590872167915334 3800 0.254607691169482 2 2 0 -6.9224746221837 LTS-025 NA NA NA NA LTS-025 chr19 3942053 3942151 99 * NMRK2 NA 0 NA 0.647 1 NA NA NA NA NA LTS-025 chr19 3942152 3963665 21514 * c(DAPK3, NMRK2, MIR637) 0.484 1 NA 0.168810384893768 39 0.159845932063662 1 1 0 -6.02652619392473 LTS-025 chr19 3963666 5215367 1251702 * c(DPP9-AS1, CHAF1A, MIR4747, MIR4746, EBI3, PLIN3, SEMA6B, LRG1, TMIGD2, TNFAIP8L1, TICAM1, DAPK3, ANKRD24, EEF2, KDM4B, SNORD37, MIR7-3HG, UHRF1, MIR7-3, PLIN5, ZBTB7A, SIRT6, PIAS4, FEM1A, STAP2, CCDC94, MYDGF, MAP2K2, SHD, PTPRS, ARRDC5, SH3GL1, PLIN4, FSD1, UBXN6, CREB3L3, HDGFRP2, MPND, DPP9) 0.0930212816533934 53 0.0990930827156466 0.596402206412477 2006 0.352027550372568 2 2 0 -6.8851797414514 LTS-025 chr19 5215368 5229283 13916 * PTPRS 0 2 0 1.12439753558273 66 0.420154965306606 0 0 0 -Inf LTS-025 chr19 5229284 5257341 28058 * PTPRS 0.456 1 NA 1.02874342653199 55 0.312241707936471 3 3 0 -5.76577761865914 LTS-025 chr19 5257342 5892954 635613 * c(C19orf70, NDUFA11, ZNRF4, PRR22, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, HSD11B1L, NRTN, DUS3L, PTPRS, SAFB, LONP1, SAFB2) 0.310036988203849 33 0.215528872951532 1.0618641299001 809 0.428164474474354 3 2 1 -6.76840393092323 LTS-025 chr19 5892955 5896395 3441 * c(NDUFA11, FUT5) 0 1 NA 1.17170106419785 12 0.282264691487628 4 4 0 -5.76448283637283 LTS-025 chr19 5896396 6307111 410716 * c(LOC100128568, ACER1, NDUFA11, FUT5, VMAC, MLLT1, RFX2, ACSBG2, CAPS, RANBP3) 0.0163233105140429 9 0.141333333333333 1.06586712682183 390 1.20900972702655 4 4 0 -6.7408040365024 LTS-025 chr19 6307112 6411830 104719 * c(ACER1, GTF2F1, PSPN, CLPP, ALKBH7) 0.493 1 NA 1.03012232518917 191 0.23480079547875 3 3 0 -5.77369736663761 LTS-025 chr19 6411831 6760974 349144 * c(SH2D3A, MIR3940, TUBB4A, SLC25A41, GPR108, C3, SLC25A23, DENND1C, KHSRP, TNFSF14, TNFSF9, CRB3, TRIP10, CD70) 0.302006694250416 21 0.220242431360146 1.02142211112492 813 0.339274769026013 3 2 1 -6.75498666477867 LTS-025 chr19 6760975 6821919 60945 * c(SH2D3A, VAV1) 0 1 NA 1.20210093657189 27 0.866264888789715 4 4 0 -5.76444661487443 LTS-025 chr19 6821920 6887643 65724 * c(ADGRE1, VAV1) 0.0493737333781927 9 0.160666666666667 1.07511248285723 117 0.834845052254135 3 3 0 -6.73852197669301 LTS-025 chr19 6887644 6896380 8737 * ADGRE1 0.42 1 NA 1.14178952252767 7 0.231516532372755 4 4 0 -5.76501784910056 LTS-025 chr19 6896381 7619760 723380 * c(LOC100128573, PNPLA6, MBD3L2, ZNF358, ADGRE1, ARHGEF18, MBD3L5, ADGRE4P, INSR, C19orf45, FLJ25758, MCOLN1, MBD3L4, MBD3L3, ZNF557, PEX11G) 0.360690361849507 38 0.160134520708738 1.05508860197533 842 0.394475174696787 3 2 1 -6.79097797205112 LTS-025 chr19 7619761 7620116 356 * PNPLA6 0.457 1 NA 1.24372510492489 5 0.128595489812046 4 4 0 -5.76441070918069 LTS-025 chr19 7620117 7684454 64338 * c(PNPLA6, XAB2, CAMSAP3) 0.180345137791966 9 0.240847173766086 1.12858657018235 173 0.93406703706703 6 5 1 -6.74327327101173 LTS-025 chr19 7684455 7687626 3172 * XAB2 0.478 1 NA 1.14564145190962 39 0.195873833639038 4 4 0 -5.76469255448062 LTS-025 chr19 7687627 7703605 15979 * c(PET100, PCP2, XAB2, STXBP2) 0.462942905651902 11 0.0291591245659835 0.951636302654967 109 0.260717769209901 4 2 2 -10.1385775386009 LTS-025 chr19 7703606 7707628 4023 * STXBP2 0 1 NA 1.09806199791594 45 0.288388323710453 4 4 0 -5.76481334295045 LTS-025 chr19 7707629 7963512 255884 * c(CLEC4M, EVI5L, TRAPPC5, MCEMP1, FCER2, CD209, CLEC4G, LYPLA2P2, CLEC4GP1, RETN, STXBP2, LRRC8E, PRR36) 0.212206574923875 22 0.226954221407575 1.05919987626342 473 0.482084109399112 4 3 1 -6.77975910503901 LTS-025 chr19 7963513 7964616 1104 * LRRC8E 0.439 1 NA 1.11635334650196 25 0.185845697645475 4 4 0 -5.76460700591722 LTS-025 chr19 7964617 8148314 183698 * c(TGFBR3L, TIMM44, ELAVL1, CTXN1, MAP2K7, CCL25, SNAPC2, LRRC8E, FBN3) 0.384734804827992 21 0.169045823598782 1.02932072694003 375 0.427796858550157 4 2 2 -6.75861521803157 LTS-025 chr19 8148315 8152054 3740 * FBN3 0 1 NA 1.01466529842055 17 0.28811263371446 3 3 0 -5.76456306095226 LTS-025 chr19 8152055 8326883 174829 * c(CERS4, FBN3) 0.0784831518195076 12 0.181590615162655 1.10638260035268 320 0.55795047304249 3 3 0 -6.7753111204899 LTS-025 chr19 8326884 8326904 21 * CERS4 0.473 1 NA 0.872 1 NA NA NA NA NA LTS-025 chr19 8326905 8651562 324658 * c(RAB11B-AS1, MIR4999, KANK3, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, RPS28, CERS4, ADAMTS10, PRAM1, ZNF414, RAB11B) 0.406332538785351 32 0.117761086047543 1.03368209417743 629 0.34379869842192 4 2 2 -6.84653941474159 LTS-025 chr19 8651563 8661413 9851 * ADAMTS10 0 1 NA 1.07832148472736 49 0.379438501645013 4 4 0 -5.76516958198328 LTS-025 chr19 8661414 9060125 398712 * c(ZNF558, ACTL9, OR2Z1, ADAMTS10, MBD3L1, MUC16) 0.290338293131742 41 0.19119558368203 1.05946484555083 707 0.568257955212141 4 3 1 -6.76181347301692 LTS-025 chr19 9060126 9061873 1748 * MUC16 0 1 NA 1.06449220104948 37 0.602177224668876 3 3 0 -5.76445398290935 LTS-025 chr19 9061874 9072784 10911 * MUC16 0.158776595635414 10 0.24571021775887 1.11939724051712 235 0.812595363983997 7 6 1 -6.73706307497032 LTS-025 chr19 9072785 9074265 1481 * MUC16 0.383 1 NA 1.01114739427327 31 0.416334354363961 3 3 0 -5.76443650887519 LTS-025 chr19 9074266 9080462 6197 * MUC16 0.355919099353759 10 0.20252626715784 1.14124539618599 88 0.679971549592307 5 3 2 -6.73397106717722 LTS-025 chr19 9080463 9083030 2568 * MUC16 0 1 NA 1.05671509529006 21 1.47999261098542 3 3 0 -5.76441956875848 LTS-025 chr19 9083031 9091591 8561 * MUC16 0.12535184272186 12 0.225203527476545 1.15228173820844 189 1.00831032247294 9 8 1 -6.73671460384783 LTS-025 chr19 9091592 9213026 121435 * c(OR1M1, OR7G2, MUC16) 0.394 1 NA 1.15930071062157 33 0.609885129522045 4 4 0 -5.76520274786266 LTS-025 chr19 9213027 9524185 311159 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR7D2, OR7E24, ZNF699, OR7G2, OR7G3, ZNF317, ZNF177, ZNF559) 0.459801281051156 13 0.0256917127215003 1.05356475314156 375 0.363368221151221 4 2 2 -10.5529520140016 LTS-025 chr19 9524186 9643633 119448 * c(ZNF266, ZNF560, ZNF426) 0 1 NA 0.998501770909244 132 0.210962262687068 3 3 0 -5.77004196038968 LTS-025 chr19 9643634 10089602 445969 * c(ZNF846, ZNF561-AS1, COL5A3, PIN1, ZNF562, FBXL12, UBL5, ZNF812P, ZNF121, ZNF426, ZNF561, OLFM2) 0.157687070094323 13 0.227276404632254 1.04070202050315 542 0.383918527487722 4 3 1 -6.91453703092872 LTS-025 chr19 10089603 10096650 7048 * COL5A3 0.484 1 NA 0.890396010614593 31 0.233553097736608 3 3 0 -5.76464823571979 LTS-025 chr19 10096651 10166375 69725 * c(C3P1, COL5A3, RDH8) 0.4092379623567 10 0.148331048671544 1.0294182110479 196 0.407012359267561 4 2 2 -6.78652656074368 LTS-025 chr19 10166376 10169560 3185 * C3P1 0 1 NA 1.4410730924144 7 1.06146874883903 5 5 0 -5.76441618158194 LTS-025 chr19 10169561 11118494 948934 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, RAVER1, ILF3-AS1, DNM2, DNMT1, C19orf38, ICAM1, ICAM3, ICAM4, ILF3, C3P1, MIR199A1, P2RY11, MRPL4, PDE4A, S1PR5, C19orf66, PPAN, SLC44A2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, KEAP1) 0.274380985775385 46 0.226313471626445 1.02674183197328 2187 0.380504948169602 3 2 1 -6.7989099320584 LTS-025 chr19 11118495 11129600 11106 * SMARCA4 0.412 1 NA 1.11391680957268 19 0.149548423576285 4 4 0 -5.76760294993837 LTS-025 chr19 11129601 11332505 202905 * c(SPC24, KANK2, LDLR, DOCK6, SMARCA4) 0.457827985565108 10 0.0349660152465536 1.02712083628896 476 0.26444557876984 4 2 2 -9.30066188779642 LTS-025 chr19 11332506 11333358 853 * DOCK6 0.036 1 NA 0.939593332296364 11 0.412494936608042 3 3 0 -5.76441014276233 LTS-025 chr19 11333359 11465316 131958 * c(CCDC159, TSPAN16, TMEM205, ANGPTL8, DOCK6, RAB3D) 0.244754933169657 9 0.242981023493148 1.02604668663834 285 0.307698681346857 4 3 1 -6.76550768951421 LTS-025 chr19 11465317 11526759 61443 * c(SWSAP1, CCDC159, EPOR, RGL3, PLPPR2) 0.488 1 NA 1.07394793720035 181 0.220800701644111 3 3 0 -5.77755798527158 LTS-025 chr19 11526760 11688120 161361 * c(CCDC151, ZNF653, CNN1, ELAVL3, ECSIT, ACP5, PRKCSH, RGL3, ELOF1) 0.475749333001816 4 0.0194315036302735 1.07123362222669 380 0.228090806580148 4 2 2 -12.6518651896268 LTS-025 chr19 11688121 11979164 291044 * c(ZNF441, ZNF491, ZNF440, ZNF627, ZNF833P, ACP5, ZNF823, ZNF439) 0.435022744576363 21 0.104461909211877 0.935643418172954 361 0.246258965648992 4 2 2 -7.18215937572787 LTS-025 chr19 11979165 12189614 210450 * c(ZNF433, ZNF763, ZNF844, ZNF878, ZNF69, ZNF700, ZNF439) 0 1 NA 0.927970312621426 359 0.484146559477264 3 3 0 -5.7645170866087 LTS-025 chr19 12189615 12741264 551650 * c(ZNF625-ZNF20, ZNF443, ZNF563, ZNF791, ZNF564, ZNF709, ZNF788, ZNF44, ZNF490, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.131535887477132 17 0.181343576249777 0.958408625182463 991 0.295403042134965 3 3 0 -6.89810777631226 LTS-025 chr19 12741265 12741352 88 * character(0) NA 0 NA 1.05 1 NA NA NA NA NA LTS-025 chr19 12741353 12874616 133264 * c(DHPS, SNORD41, HOOK2, TNPO2, MAN2B1, ASNA1, WDR83OS, BEST2, C19orf43, FBXW9, WDR83) 0 3 0 1.03676554928762 541 0.304454787528579 0 0 0 -Inf LTS-025 chr19 12874617 12911926 37310 * c(HOOK2, JUNB, PRDX2) 0.476 1 NA 1.0212260970568 143 0.207970084844644 3 3 0 -5.7678602051085 LTS-025 chr19 12911927 13319693 407767 * c(RNASEH2A, KLF1, NACC1, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, LYL1, NFIX, TRMT1, RAD23A, PRDX2, CACNA1A, CALR, RTBDN, STX10, GADD45GIP1, IER2) 0.294003514821885 19 0.218361160674759 1.04890049694716 836 0.376289713164838 3 2 1 -6.76967044852426 LTS-025 chr19 13319694 13366014 46321 * CACNA1A 0 1 NA 1.0514196991775 89 0.373028749778605 3 3 0 -5.76686138350157 LTS-025 chr19 13366015 14301894 935880 * c(LOC100507373, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, NANOS3, PALM3, MIR181C, CC2D1A, PRKACA, ASF1B, MIR181D, RFX1, C19orf67, ZSWIM4, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, SAMD1, DCAF15, IL27RA) 0.0456092556189217 16 0.163613314454132 1.02593203311659 1300 0.367741524219179 3 3 0 -6.7660760906753 LTS-025 chr19 14301895 14492265 190371 * c(ADGRL1, ADGRE5) 0.426 1 NA 0.99610897922765 13 0.260870534743646 3 3 0 -5.76981384193093 LTS-025 chr19 14492266 14857668 365403 * c(DDX39A, GIPC1, ADGRE2, DNAJB1, CLEC17A, NDUFB7, PKN1, PTGER1, MIR639, ZNF333, ADGRE3, TECR, ADGRE5) 0.208428911046678 13 0.22380669314709 1.03859679497981 706 0.347566396653034 4 3 1 -6.82400999397235 LTS-025 chr19 14857669 14857673 5 * ADGRE2 0.438 1 NA 1.288 1 NA NA NA NA NA LTS-025 chr19 14857674 15285272 427599 * c(ILVBL, OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, OR7A10, NOTCH3, SLC1A6, SYDE1) 0.390531110382597 28 0.168133592009166 1.10150502917692 580 0.572970126716761 4 2 2 -6.7536660320022 LTS-025 chr19 15285273 15289684 4412 * NOTCH3 0 1 NA 1.03772683439829 11 0.245159057830551 3 3 0 -5.76483040630213 LTS-025 chr19 15289685 15640620 350936 * c(MIR1470, AKAP8, PGLYRP2, CYP4F22, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3) 0.262922416399496 10 0.248804787378021 1.07922223643458 720 0.310704409831888 4 3 1 -6.77264321491646 LTS-025 chr19 15640621 15729056 88436 * c(CYP4F8, CYP4F22) 0.49 1 NA 1.02454091061484 54 0.260758014523743 3 3 0 -5.77003105567333 LTS-025 chr19 15729057 15934599 205543 * c(CYP4F8, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F12) 0.45183114307847 22 0.0440278345646276 1.12639282895455 296 0.424025002274424 4 2 2 -8.36219646982809 LTS-025 chr19 15934600 15934656 57 * character(0) 0.434 1 NA 1.09013661726868 3 0.143653518346518 4 4 0 -5.76443562775418 LTS-025 chr19 15934657 16238279 303623 * c(LINC00661, OR10H4, LINC00905, RAB8A, CYP4F11, UCA1, TPM4, CYP4F2) 0.322709142746684 9 0.202127091482342 0.986004455472297 223 0.262111641297244 3 2 1 -6.73958964618764 LTS-025 chr19 16238280 16268503 30224 * c(RAB8A, HSH2D) 0 1 NA 0.992891940606605 65 0.72641347359158 3 3 0 -5.76450861157722 LTS-025 chr19 16268504 16689236 420733 * c(KLF2, CHERP, CIB3, CALR3, FAM32A, EPS15L1, SLC35E1, C19orf44, HSH2D, AP1M1, MED26) 0.0927533531383295 11 0.216590984451003 0.990068404511842 623 0.568739608607337 3 3 0 -6.77671258562559 LTS-025 chr19 16689237 16756333 67097 * MED26 0.431 1 NA 0.83104564728251 21 0.13979767693417 3 3 0 -5.79612257962043 LTS-025 chr19 16756334 17397238 640905 * c(ANKLE1, NR2F6, SIN3B, CPAMD8, NWD1, BABAM1, MYO9B, USE1, TMEM38A, SMIM7, OCEL1, USHBP1, F2RL3, HAUS8) 0.262171276391877 29 0.223488960065002 1.03285282938545 1193 0.36400398164164 3 2 1 -6.81303680890413 LTS-025 chr19 17397239 17412366 15128 * c(ANKLE1, ABHD8) 0.459 1 NA 0.999714161136861 49 0.157595603205356 3 3 0 -5.76574210244475 LTS-025 chr19 17412367 17449699 37333 * c(ANO8, MRPL34, DDA1, ABHD8, GTPBP3) 0.467542020829606 10 0.0177838878389025 1.05892697509576 186 0.282402524042519 4 2 2 -12.6676603381745 LTS-025 chr19 17449700 17452263 2564 * GTPBP3 0 1 NA 1.25042731555153 21 0.296785829465338 4 4 0 -5.76441267099173 LTS-025 chr19 17452264 17716582 264319 * c(TMEM221, NXNL1, FAM129C, UNC13A, PGLS, SLC27A1, BST2, COLGALT1, PLVAP, GTPBP3, MVB12A) 0.287198357957692 12 0.245382246647342 1.03294706100758 540 0.331036104907018 3 2 1 -6.76387537580095 LTS-025 chr19 17716583 17738744 22162 * UNC13A 0 1 NA 1.0526894083908 70 0.490011902715957 3 3 0 -5.76510486471067 LTS-025 chr19 17738745 17950937 212193 * c(B3GNT3, UNC13A, FCHO1, INSL3, JAK3, MAP1S) 0.0686769014306799 16 0.167104146667081 1.08155427031559 512 0.4500557776233 3 3 0 -6.7687621785776 LTS-025 chr19 17950938 17958777 7840 * JAK3 0.393 1 NA 0.927296973035382 41 0.209833148000977 3 3 0 -5.7644335847585 LTS-025 chr19 17958778 18260491 301714 * c(CCDC124, MAST3, SNORA68, ARRDC2, IL12RB1, JAK3, KCNN1, RPL18A, SLC5A5) 0.318589915314932 9 0.23404421472116 1.01010835285501 487 0.298319191202903 3 2 1 -6.74465189631309 LTS-025 chr19 18260492 18285944 25453 * c(IFI30, MAST3, PIK3R2) 0.495 1 NA 0.954264416766514 109 0.222963342403467 3 3 0 -5.76446906476282 LTS-025 chr19 18285945 18685964 400020 * c(MIR3188, MIR3189, IFI30, LRRC25, SSBP4, FKBP8, LSM4, JUND, PDE4C, ISYNA1, PIK3R2, PGPEP1, RAB3A, LOC729966, UBA52, KXD1, KIAA1683, ELL, MPV17L2, GDF15) 0.422619792247446 25 0.128521308220336 1.0331384023226 746 0.324519680027619 4 2 2 -6.90991262969145 LTS-025 chr19 18685965 18724705 38741 * c(TMEM59L, C19orf60, UBA52, CRLF1) 0 1 NA 1.07976962319875 63 0.473831499926483 4 4 0 -5.76628756094751 LTS-025 chr19 18724706 19014214 289509 * c(CERS1, COPE, COMP, CRTC1, TMEM59L, GDF1, KLHL26, UPF1) 0.0814404836296913 10 0.199878879991526 1.09186915040955 459 0.472350464211887 3 3 0 -6.78173401320772 LTS-025 chr19 19014215 19018866 4652 * c(COPE, HOMER3) 0.424 1 NA 1.14901254499974 27 0.354938616738756 4 4 0 -5.76452665734621 LTS-025 chr19 19018867 19256870 238004 * c(MEF2B, SUGP2, COPE, SLC25A42, BORCS8-MEF2B, DDX49, TMEM161A, ARMC6, HOMER3) 0.238534272523901 11 0.240389381099612 1.03887943198603 411 0.345527337576063 4 3 1 -6.77547499109809 LTS-025 chr19 19256871 19258478 1608 * c(MEF2B, BORCS8-MEF2B) 0 1 NA 1.01884163643445 25 0.64805940314141 3 3 0 -5.76442458327505 LTS-025 chr19 19258479 19416621 158143 * c(MEF2B, NR2C2AP, NCAN, HAPLN4, BORCS8-MEF2B, TM6SF2, SUGP1, BORCS8, RFXANK) 0.0709085191193957 11 0.183453189471518 1.0719188699045 409 0.666536581095762 3 3 0 -6.75895074913168 LTS-025 chr19 19416622 19431963 15342 * c(MAU2, SUGP1) 0.477 1 NA 0.815406664241716 39 0.27326275956025 3 3 0 -5.7669439717372 LTS-025 chr19 19431964 19646272 214309 * c(MAU2, YJEFN3, NDUFA13, GATAD2A, TSSK6) 0.388964878903093 21 0.190958522048263 1.08267282359901 406 0.391999935592276 4 2 2 -6.75451443875639 LTS-025 chr19 19646273 19646441 169 * YJEFN3 0.409 1 NA 1.23591766032311 5 0.143008740991591 4 4 0 -5.76441013536861 LTS-025 chr19 19646442 19753292 106851 * c(CILP2, YJEFN3, GMIP, PBX4, LPAR2) 0.221396715751764 9 0.221153227423884 1.09677951903277 301 0.39061840623715 4 3 1 -6.76119212109908 LTS-025 chr19 19753293 19756662 3370 * c(GMIP, ATP13A1) 0.45 1 NA 1.00411337604315 25 0.159402530301958 3 3 0 -5.76474385702769 LTS-025 chr19 19756663 19770774 14112 * ATP13A1 NA 0 NA 1.15747766155249 97 0.255108568795429 4 NA NA -5.76496293548971 LTS-025 chr19 19770775 19772754 1980 * ATP13A1 NA 0 NA 0.573 1 NA NA NA NA NA LTS-025 chr19 19772755 20230264 457510 * c(LINC00663, ZNF506, ZNF253, ATP13A1, ZNF14, ZNF90, ZNF93, ZNF682, ZNF101) 0.465372589512117 10 0.0298209471494265 0.864155663363011 300 0.228862798909385 2 1 1 -10.5512887186828 LTS-025 chr19 20230265 20242274 12010 * ZNF90 0.391 1 NA 0.777200390167019 7 0.249755499486617 2 2 0 -5.76830199554597 LTS-025 chr19 20242275 24115369 3873095 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF826P, ZNF726, ZNF708, ZNF43, ZNF85, ZNF91, ZNF99, ZNF208, ZNF430, ZNF486) 0.32741203148671 18 0.21644130813983 0.921506416641241 1160 0.345925292864776 3 2 1 -6.74174374017172 LTS-025 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.953370723239131 95 0.310803256182672 3 NA NA -5.76464810087579 LTS-025 chr19 28247625 30528829 2281205 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1) 0 1 NA 0.990678828722829 315 0.30458156217238 3 3 0 -5.80298906998567 LTS-025 chr19 30528830 33902606 3373777 * c(THEG5, CEBPA, CEBPG, SLC7A9, WDR88, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12, NA, ZNF536) 0.252533186489611 34 0.223493403141506 1.08160622696765 1363 0.465286953337951 4 3 1 -6.89558037225788 LTS-025 chr19 33902607 34583419 680813 * c(PEPD, CHST8, KCTD15) 0.5 1 NA 1.09124478576345 153 0.319798739169077 4 4 0 -5.82531407144309 LTS-025 chr19 34583420 34890685 307266 * c(LSM14A, GPI, KIAA0355) 0.405973991732467 9 0.163687795649048 1.03866462266916 271 0.303868189677861 4 2 2 -6.82395884370714 LTS-025 chr19 34890686 34900198 9513 * c(GPI, PDCD2L) 0 1 NA 1.17466448230402 23 0.491950060128138 4 4 0 -5.76447015443703 LTS-025 chr19 34900199 35513937 613739 * c(SCGB2B3P, UBA2, LINC00904, WTIP, ZNF792, ZNF599, SCGB2B2, ZNF181, LOC400685, ZNF302, GRAMD1A, SCGB1B2P, PDCD2L, ZNF30) 0.291353039815044 20 0.225701456283341 1.02959508889873 630 0.437179407183318 3 2 1 -6.76622009099977 LTS-025 chr19 35513938 35530073 16136 * c(GRAMD1A, SCN1B) 0.472 1 NA 1.11389132442019 41 0.252396755033062 4 4 0 -5.76603990116375 LTS-025 chr19 35530074 35645877 115804 * c(HPN-AS1, LGI4, HPN, FXYD1, FXYD3, FXYD7, FXYD5, SCN1B) 0.460554097542479 27 0.0380266812912788 1.0285438049747 303 0.343584138861078 4 2 2 -9.08268538872643 LTS-025 chr19 35645878 35716034 70157 * c(FAM187B, FXYD5) 0 1 NA 1.10410019518549 67 0.36969054314839 4 4 0 -5.76829882002442 LTS-025 chr19 35716035 35849903 133869 * c(MIR5196, FAM187B, FFAR1, FFAR3, MAG, LSR, HAMP, USF2, CD22) 0.218313075815777 10 0.250576136134309 1.01888337753587 319 0.506289062701866 4 3 1 -6.76454994975743 LTS-025 chr19 35849904 35851090 1187 * FFAR3 0.315 1 NA 1.17486975443277 30 0.758510352712746 4 4 0 -5.76441326085181 LTS-025 chr19 35851091 35862499 11409 * FFAR3 NA 0 NA 1.31614755039785 14 0.811904425842905 4 NA NA -5.76445170991043 LTS-025 chr19 35862500 35898772 36273 * LINC01531 0.24425735170686 2 0.340825468531916 0.385887704225878 40 0.403116035181575 2 1 1 -6.84713640196474 LTS-025 chr19 35898773 36037525 138753 * c(LINC01531, TMEM147-AS1, TMEM147, GAPDHS, FFAR2, SBSN, KRTDAP, DMKN) 0.462916869116831 7 0.0283590919325372 1.0377378468261 281 0.239614048889068 4 2 2 -10.2857355432274 LTS-025 chr19 36037526 36041393 3868 * c(TMEM147, ATP4A) 0 1 NA 1.11143502036981 25 0.541137989179593 4 4 0 -5.76449879155321 LTS-025 chr19 36041394 36526129 484736 * c(UPK1A-AS1, HCST, UPK1A, ARHGAP33, HSPB6, COX6B1, PROSER3, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, CLIP3, ZBTB32, APLP1, NPHS1, ATP4A, PSENEN, LIN37, PRODH2, SDHAF1, TYROBP, RBM42, LRFN3, IGFLR1, KIRREL2, NFKBID, ALKBH6, KMT2B) 0.0821727180755507 25 0.190491452126686 1.05332460467463 1626 0.367331470854565 3 3 0 -6.79609305047471 LTS-025 chr19 36526130 36558195 32066 * c(THAP8, WDR62) 0.496 1 NA 0.969145317303244 73 0.196093622803266 3 3 0 -5.76484034497902 LTS-025 chr19 36558196 36851429 293234 * c(LOC100134317, LINC00665, TBCB, COX7A1, ZNF565, WDR62, POLR2I, ZFP14, OVOL3, ZNF146, CAPNS1) 0.244237925439728 12 0.24892805033267 1.04627465555042 394 0.536150334620669 4 3 1 -6.75367774070097 LTS-025 chr19 36851430 36883444 32015 * c(ZFP82, ZFP14) 0.493 1 NA 0.983063544222782 25 0.350972662753098 3 3 0 -5.76470632302794 LTS-025 chr19 36883445 37004938 121494 * c(ZFP82, ZNF260, LOC644189, LOC728752, ZNF566) 0.465327145032729 10 0.0269229352865627 1.02209915307547 226 0.237909641383292 4 2 2 -10.61458317104 LTS-025 chr19 37004939 37038144 33206 * c(ZNF260, ZNF529) 0 1 NA 1.04665456032527 39 0.321183397187463 3 3 0 -5.76659016744278 LTS-025 chr19 37038145 37470169 432025 * c(ZNF567, ZNF345, ZNF790-AS1, ZNF850, ZNF829, ZNF568, ZNF790, ZNF529, ZNF382, ZNF461) 0.352378928571558 14 0.216906484635483 1.01539409175946 613 0.252252728495376 3 2 1 -6.76272276072343 LTS-025 chr19 37470170 37482068 11899 * ZNF568 0.498 1 NA 1.22761170985881 16 0.154144899364202 4 4 0 -5.76442229409401 LTS-025 chr19 37482069 37690420 208352 * c(ZNF420, ZNF585A, ZNF568, ZNF585B) 0.455124313698885 18 0.0387100838055834 1.05316576687994 263 0.337518766418939 4 2 2 -8.84550567087211 LTS-025 chr19 37690421 37835697 145277 * c(ZNF383, LOC284412, HKR1, ZNF585B) 0 1 NA 0.95112826400746 57 0.29751533205369 3 3 0 -5.76451991866688 LTS-025 chr19 37835698 38102570 266873 * c(ZNF571-AS1, ZNF569, ZNF570, ZNF540, HKR1, ZNF793, ZNF571, ZNF527) 0.139942333249881 9 0.209760577802408 1.06896468048013 398 0.390269162074551 3 3 0 -6.89529538315654 LTS-025 chr19 38102571 38124104 21534 * c(ZNF540, ZFP30) 0.472 1 NA 0.958097935593518 35 0.30311402852015 3 3 0 -5.76445498773627 LTS-025 chr19 38124105 38384421 260317 * c(LOC100631378, ZNF573, ZNF781, ZFP30, LOC644554, WDR87, ZNF607) 0.259461306198642 10 0.238441723604648 1.13958206017423 382 0.691467035212238 4 3 1 -6.73538017556007 LTS-025 chr19 38384422 38385358 937 * WDR87 0 1 NA 1.24718354645882 19 1.56058051501986 4 4 0 -5.76441015526862 LTS-025 chr19 38385359 38939283 553925 * c(SPINT2, RASGRP4, FAM98C, GGN, SIPA1L3, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, DPF1, WDR87, YIF1B, KCNK6, PPP1R14A) 0.0309739951696523 21 0.14092748895392 1.05241300377177 905 0.552334422741824 3 3 0 -6.74721441755762 LTS-025 chr19 38939284 38946215 6932 * RYR1 0.464 1 NA 1.17065003165251 21 0.20471992482181 4 4 0 -5.76469810664273 LTS-025 chr19 38946216 39002725 56510 * RYR1 0.395417049969173 15 0.122290170145788 1.06003088745234 249 0.689700831740875 4 2 2 -6.76380951903807 LTS-025 chr19 39002726 39005712 2987 * RYR1 0 1 NA 1.0240886554141 13 0.517131598090457 3 3 0 -5.76445793393735 LTS-025 chr19 39005713 39307746 302034 * c(MAP4K1, CAPN12, ECH1, EIF3K, LGALS4, LGALS7, RYR1, LGALS7B, ACTN4) 0.0459565917912324 12 0.159218236925601 1.04419290503486 693 0.543791321580548 3 3 0 -6.74224114672363 LTS-025 chr19 39307747 39329205 21459 * c(ECH1, HNRNPL) 0.446 1 NA 0.971015790321349 37 0.254328855355948 3 3 0 -5.76460453842554 LTS-025 chr19 39329206 39759474 430269 * c(IFNL4, PAK4, FBXO17, RINL, FBXO27, SIRT2, IFNL2, IFNL3, HNRNPL, NCCRP1, SYCN, ACP7, NFKBIB, SARS2, MRPS12, CCER2) 0.269650890107662 26 0.233855395819396 1.05203538246599 637 0.440933357362654 4 3 1 -6.7674751514579 LTS-025 chr19 39759475 39789115 29641 * c(IFNL2, IFNL1) 0.471 1 NA 0.95676007904628 35 0.250779698426442 3 3 0 -5.76448676962404 LTS-025 chr19 39789116 39955515 166400 * c(MIR4530, IFNL1, PAF1, SAMD4B, MED29, LRFN1, RPS16, PLEKHG2, SUPT5H, ZFP36, GMFG) 0.464234624967877 16 0.0414655981909502 1.02100267309908 506 0.266819000646827 4 2 2 -8.96326131312769 LTS-025 chr19 39955516 39959803 4288 * SUPT5H 0 1 NA 1.05792321295277 17 1.08130982323455 3 3 0 -5.76444023503648 LTS-025 chr19 39959804 40376722 416919 * c(LOC100129935, DLL3, CLC, EID2B, LGALS16, EID2, FBL, LGALS13, LEUTX, SELENOV, LGALS17A, LGALS14, SUPT5H, FCGBP, DYRK1B, TIMM50) 0.156980431111569 19 0.203577678896851 1.07419965345378 596 0.603039671629177 5 4 1 -6.868390307394 LTS-025 chr19 40376723 40376832 110 * FCGBP NA 0 NA 0.532 1 NA NA NA NA NA LTS-025 chr19 40376833 40399881 23049 * FCGBP NA 0 NA 0.245928272056543 39 0.118759092272133 1 NA NA -5.88891698518413 LTS-025 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.803 1 NA NA NA NA NA LTS-025 chr19 40405935 40998845 592911 * c(C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, SERTAD3, SERTAD1, ZNF546, MAP3K10, PSMC4, PRX, SPTBN4, BLVRB, MIR641, CNTD2, FCGBP) 0.129673159238905 23 0.2068780741147 1.02541084137093 1184 0.483758091240826 3 3 0 -6.8660890533064 LTS-025 chr19 40998846 41038574 39729 * SPTBN4 0.478 1 NA 1.04886928367257 107 0.251860991600739 3 3 0 -5.76882062829898 LTS-025 chr19 41038575 41531915 493341 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, CYP2A6, CYP2A7, CYP2B6, CYP2B7P, CYP2G1P, C19orf54, RAB4B, SPTBN4, SNRPA, COQ8B, ITPKC, MIA, LTBP4, NUMBL, SHKBP1) 0.418052478172627 23 0.137283354299015 1.04580366907704 1064 0.273530646318243 4 2 2 -6.91836440120357 LTS-025 chr19 41531916 41622425 90510 * c(CYP2A7, CYP2A13, CYP2F1) 0 1 NA 0.957271961312601 61 0.747368716837348 3 3 0 -5.76443822332126 LTS-025 chr19 41622426 41758350 135925 * c(CYP2F1, CYP2S1, AXL) 0.206287056065482 9 0.24422940035958 1.06586453557145 187 0.417561236232789 4 3 1 -6.77655938013686 LTS-025 chr19 41758351 41812358 54008 * c(HNRNPUL1, AXL) 0.491 1 NA 1.0006965842698 119 0.275228687396581 3 3 0 -5.76602036402662 LTS-025 chr19 41812359 41945904 133546 * c(HNRNPUL1, B3GNT8, ATP5SL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.453662396948755 16 0.0390665564560448 1.02817364642308 286 0.306438589708717 4 2 2 -8.7686926901228 LTS-025 chr19 41945905 42090783 144879 * c(ERICH4, PCAT19, CEACAM21) 0 1 NA 0.971660111069399 71 0.631551721286515 3 3 0 -5.76463212401716 LTS-025 chr19 42090784 42406526 315743 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, RPS19, DMRTC2, CEACAM21, ARHGEF1, CD79A) 0.2432701810416 10 0.233425815005777 1.02037132314626 463 0.447214861344751 4 3 1 -6.77222377171174 LTS-025 chr19 42406527 42406837 311 * ARHGEF1 0 1 NA 1.1110086764619 7 0.89434479874801 4 4 0 -5.76441275559158 LTS-025 chr19 42406838 43780619 1373782 * c(LOC100289650, MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM8, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, LOC284344, GRIK5, GSK3A, LIPE, PSG8, ATP1A3, PAFAH1B3, POU2F2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CEACAM1, ZNF574, PSG10P, CNFN, ARHGEF1) 0.0464306517065791 41 0.143822468477719 1.06218982353045 1743 0.494143458056222 3 3 0 -6.78553170098737 LTS-025 chr19 43780620 43866449 85830 * c(PRG1, CD177) 0.472 1 NA 1.12416926076256 39 0.342428427660694 4 4 0 -5.76832030660745 LTS-025 chr19 43866450 44082945 216496 * c(ETHE1, LYPD3, ZNF575, PINLYP, CD177, PHLDB3, XRCC1, TEX101) 0.364087590611036 13 0.170787392196653 1.07192738812453 323 0.356630083127284 4 2 2 -6.75393116190021 LTS-025 chr19 44082946 44103742 20797 * c(IRGQ, PINLYP, ZNF576) 0 1 NA 0.977913143039754 89 0.530554179596421 3 3 0 -5.76447526129338 LTS-025 chr19 44103743 44352666 248924 * c(SRRM5, ZNF428, CADM4, LYPD5, ZNF283, KCNN4, PLAUR, SMG9, IRGC, ZNF576) 0.2256791857197 12 0.241759021015606 1.03583231043561 427 0.361246075816358 4 3 1 -6.78342273823593 LTS-025 chr19 44352667 44352688 22 * ZNF283 0.486 1 NA 1.417 1 NA NA NA NA NA LTS-025 chr19 44352689 44612231 259543 * c(LOC100379224, LOC100505715, ZNF283, ZNF404, ZNF284, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF230) 0.373735462967826 27 0.185137024791688 1.03262638257413 409 0.464712579873526 4 2 2 -6.75662480721092 LTS-025 chr19 44612232 44654556 42325 * c(LOC100379224, ZNF234, ZNF224, ZNF225) 0 1 NA 1.07301815841051 67 0.251338053778671 3 3 0 -5.7713156290159 LTS-025 chr19 44654557 44932831 278275 * c(ZNF234, ZNF285, ZNF233, ZNF226, ZNF227, ZNF112, ZNF229, ZNF235) 0.0551002969851878 10 0.190854482088667 1.03299203940161 422 0.662647070966405 3 3 0 -6.74266651399599 LTS-025 chr19 44932832 44933504 673 * ZNF229 0.5 1 NA 1.06781432096342 15 0.160013243499524 3 3 0 -5.76466123782192 LTS-025 chr19 44933505 45001346 67842 * c(ZNF180, ZNF229) 0.349691849413129 10 0.194224984089186 1.00146952206523 110 0.417834985545676 3 2 1 -6.73999318239739 LTS-025 chr19 45001347 45001419 73 * ZNF180 0 1 NA 1.957 1 NA NA NA NA NA LTS-025 chr19 45001420 45295736 294317 * c(MIR4531, CEACAM20, IGSF23, CBLC, CEACAM22P, CEACAM16, CEACAM19, PVR, BCL3, ZNF180) 0.129130090973874 13 0.220060801621407 1.05911602926141 433 0.511634347093447 3 3 0 -6.84918897173566 LTS-025 chr19 45295737 45316704 20968 * c(CBLC, BCAM) 0.459 1 NA 1.01682293670353 39 0.21623021544843 3 3 0 -5.76601943464093 LTS-025 chr19 45316705 45912909 596205 * c(APOC4-APOC2, TOMM40, PPP1R13L, CD3EAP, CLASRP, CKM, CLPTM1, KLC3, ZNF296, ERCC1, ERCC2, PPP1R37, NKPD1, APOC1, APOC1P1, APOC2, APOE, BLOC1S3, BCAM, MARK4, NECTIN2, RELB, TRAPPC6A, GEMIN7, EXOC3L2) 0.219375591556677 30 0.221527479419441 1.03198092778594 1203 0.288499733772625 4 3 1 -6.89335380165144 LTS-025 chr19 45912910 45971961 59052 * c(CD3EAP, ERCC1, FOSB) 0.417 1 NA 0.927217551297166 47 0.208592796308023 3 3 0 -5.76459095878993 LTS-025 chr19 45971962 47725077 1753116 * c(SNAR-E, EML2-AS1, MIR320E, MIR642B, PPP5D1, DACT3-AS1, SAE1, RNU6-66P, AP2S1, PPM1N, DACT3, SIX5, IGFL2, DMPK, DMWD, ERCC1, ZC3H4, FBXO46, FOSB, EML2, PRKD2, IRF2BP1, GIPR, BBC3, GPR4, ARHGAP35, STRN4, FOXA3, MYPOP, NANOS2, IGFL1, BHMG1, IGFL3, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, PPP5C, PTGIR, PNMAL2, RTN2, HIF3A, SLC1A5, SNRPD2, MIR642A, CCDC61, VASP, MIR769, FKRP, OPA3, CALM3, NA NA NA NA NA NA NA NA NA LTS-025 RSPH6A, SYMPK, CCDC8, PGLYRP1, LOC93429, GNG8) 0.329820765531597 43 0.194345848862536 1.02840278045884 2665 0.360560586379637 3 2 1 -6.79598402849383 LTS-025 NA NA NA NA LTS-025 chr19 47725078 47735875 10798 * c(MIR3191, MIR3190, BBC3) 0.429 1 NA 0.909011424327293 21 0.266690564405374 3 3 0 -5.7645200111649 LTS-025 chr19 47735876 47813165 77290 * c(INAFM1, CCDC9, BBC3, C5AR1) 0.478711056896776 14 0.0183512732737876 0.916426544700974 94 0.332612944678559 4 2 2 -13.0915686014605 LTS-025 chr19 47813166 47856970 43805 * c(C5AR2, C5AR1, DHX34) 0 1 NA 1.10163297950334 71 0.255313625732959 4 4 0 -5.76970428382706 LTS-025 chr19 47856971 48197331 340361 * c(NAPA-AS1, KPTN, GLTSCR1, MEIS3, SLC8A2, ZNF541, NAPA, DHX34) 0.154282034941817 14 0.224537191906932 0.983469439247593 568 0.286591825284662 3 3 0 -6.90129949735232 LTS-025 chr19 48197332 48244194 46863 * c(GLTSCR1, EHD2) 0.48 1 NA 1.06430831699261 93 0.301339213975518 3 3 0 -5.7690903169019 LTS-025 chr19 48244195 48537585 293391 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, GLTSCR2, EHD2, CABP5, ELSPBP1, SELENOW, SULT2A1, SNORD23) 0.397759622997227 24 0.160568549404829 0.989960018703936 386 0.333672343460655 4 2 2 -6.82960294165362 LTS-025 chr19 48537586 48551657 14072 * c(CABP5, PLA2G4C) 0 1 NA 1.12500713094738 27 0.468377517154163 4 4 0 -5.76474758476663 LTS-025 chr19 48551658 48697961 146304 * c(LIG1, PLA2G4C) 0.292712406348215 12 0.228585820366722 1.05327294649325 286 1.73270988122271 4 3 1 -6.74320721719365 LTS-025 chr19 48697962 48698374 413 * character(0) 0 1 NA 0.836703077366089 13 0.30457425097827 3 3 0 -5.76444700089842 LTS-025 chr19 48698375 49110498 412124 * c(CARD8-AS1, KDELR1, LMTK3, ZNF114, SPACA4, EMP3, CARD8, SYNGR4, GRIN2D, KCNJ14, FAM83E, TMEM143, SULT2B1, GRWD1, CYTH2, CCDC114) 0.0616973136188234 16 0.164196008376168 1.02245655953083 799 0.379968729082827 3 3 0 -6.76003970250159 LTS-025 chr19 49110499 49131626 21128 * c(SPACA4, FAM83E, SPHK2, RPL18) 0.486 1 NA 1.02044065764814 109 0.268236624420041 3 3 0 -5.76556295661851 LTS-025 chr19 49131627 49632079 500453 * c(SNAR-G1, SNAR-G2, LOC101059948, CGB3, RUVBL2, CGB1, CGB2, NTN5, DBP, PPP1R15A, FTL, FUT1, FUT2, FGF21, DHDH, MAMSTR, IZUMO1, GYS1, KCNA7, LHB, NTF4, NUCB1, HSD17B14, RASIP1, C19orf73, SPHK2, PLEKHA4, BAX, BCAT2, LIN7B, SEC1P, SNRNP70, TULP2, CA11, PPFIA3, CGB5, CGB7, CGB8) 0.416787350740003 20 0.144478472262716 0.996465248157344 1316 0.261645475140601 3 2 1 -6.9556231853888 LTS-025 chr19 49632080 49633740 1661 * PPFIA3 0 1 NA 0.982234178024473 21 0.361913038752471 3 3 0 -5.76442402487305 LTS-025 chr19 49633741 50208105 574365 * c(MIR4324, GFY, MIR5088, PTH2, CPT1C, ALDH16A1, CCDC155, ADM5, FCGRT, FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, SLC6A16, HRC, PRMT1, IRF3, MIR150, NOSIP, TRPM4, PIH1D1, PRRG2, SLC17A7, RCN3, PRR12, SCAF1, RPS11, RRAS, BCL2L12, SNORD35B, TEAD2, PPFIA3, CD37) 0.296866279742831 26 0.217093801066586 1.03873064954988 1584 0.84303260469992 3 2 1 -6.75182244413995 LTS-025 chr19 50208106 50212024 3919 * CPT1C 0.465 1 NA 1.03399924662214 27 0.18742902930347 3 3 0 -5.76500260960628 LTS-025 chr19 50212025 50386340 174316 * c(PTOV1-AS1, MIR4749, PNKP, CPT1C, AP2A1, PTOV1, TSKS, TBC1D17, FUZ, MED25, AKT1S1) 0.444845642447885 17 0.0370439921301846 1.0434767553799 671 0.252200476713778 4 2 2 -8.62734243451539 LTS-025 chr19 50386341 50399297 12957 * c(MIR4750, IL4I1, TBC1D17) 0 1 NA 1.04527821101607 83 0.258282238381837 3 3 0 -5.76569332071383 LTS-025 chr19 50399298 50464453 65156 * c(MIR4751, SIGLEC11, ATF5, NUP62, IL4I1) 0.272564413435513 5 0.247988507798245 1.1096908797571 137 0.545823252501423 4 3 1 -6.73525245239642 LTS-025 chr19 50464454 50475175 10722 * SIGLEC16 NA 0 NA 0.321971839309189 39 0.363703850994281 1 NA NA -5.7648097155393 LTS-025 chr19 50475176 50475180 5 * SIGLEC16 NA 0 NA 1.336 1 NA NA NA NA NA LTS-025 chr19 50475181 50940931 465751 * c(SNAR-B2, SNAR-D, IZUMO2, NAPSB, ZNF473, KCNC3, SIGLEC16, LOC400710, MYBPC2, VRK3, POLD1, SPIB, NR1H2, MYH14, NAPSA) 0.140149088712369 13 0.225917616025774 1.02895637254408 771 0.382849855119925 3 3 0 -6.8742932175097 LTS-025 chr19 50940932 50940938 7 * MYBPC2 0.352 1 NA 1.602 1 NA NA NA NA NA LTS-025 chr19 50940939 51020903 79965 * c(FAM71E1, JOSD2, EMC10, MYBPC2, ASPDH, LRRC4B) 0.334429328589001 12 0.233370105327581 1.09242840738246 250 0.434721774366587 3 2 1 -6.73886698867817 LTS-025 chr19 51020904 51132701 111798 * c(SNAR-F, SYT3, LRRC4B) 0 1 NA 1.14515233121 67 0.579207346429842 4 4 0 -5.76556160285094 LTS-025 chr19 51132702 51503991 371290 * c(KLK8, KLK5, MGC45922, KLK9, GPR32, C19orf81, KLK3, KLK1, KLK2, SHANK1, KLK15, KLK7, KLK6, KLKP1, CLEC11A, SNORD88A, SNORD88B, SNORD88C, SYT3, C19orf48, ACPT, KLK4) 0.16088515757094 18 0.228206562776178 1.08845421330727 682 0.5489804668844 5 4 1 -6.85268698002637 LTS-025 chr19 51503992 51519236 15245 * c(KLK8, KLK9, KLK10) 0.486 1 NA 0.989093495980897 43 0.370473650021039 3 3 0 -5.76457472809269 LTS-025 chr19 51519237 51630482 111246 * c(KLK11, KLK13, SIGLEC9, KLK14, KLK12, KLK10, CTU1) 0.343402729415127 10 0.227367641594939 0.979409453625249 220 0.258669421369595 3 2 1 -6.7366498604866 LTS-025 chr19 51630483 51631200 718 * SIGLEC9 0 1 NA 1.25514440267305 5 1.08337888109378 4 4 0 -5.76441022636454 LTS-025 chr19 51631201 51994582 363382 * c(LOC100129083, CLDND2, VSIG10L, C19orf84, ETFB, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, LIM2, IGLON5, NKG7, CEACAM18, SIGLEC10, CD33) 0.109667226228334 13 0.201597180230585 1.01061942131424 583 0.486413791392318 3 3 0 -6.8178961234234 LTS-025 chr19 51994583 51994813 231 * SIGLEC12 0.438 1 NA 1.59776128629253 5 0.492584307504817 5 5 0 -5.76441121068083 LTS-025 chr19 51994814 52133661 138848 * c(LINC01530, ZNF175, SIGLEC5, SIGLEC12, SIGLEC6) 0.370255428104127 10 0.197635017140182 1.00268755923175 343 0.432286941583486 4 2 2 -6.75244535436024 LTS-025 chr19 52133662 52133675 14 * SIGLEC5 NA 0 NA 1.643 1 NA NA NA NA NA LTS-025 chr19 52133676 52196631 62956 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.478644859127607 2 0.0205060966544099 1.77640447064409 41 0.904719281351282 6 3 3 -12.4745676223194 LTS-025 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 1.022 1 NA NA NA NA NA LTS-025 chr19 52196825 52249702 52878 * c(SPACA6, FPR1, HAS1) 0.389945933111486 5 0.218428020180562 1.01181243477602 87 0.344187950246511 4 2 2 -6.74951363281509 LTS-025 chr19 52249703 52249999 297 * FPR1 0 1 NA 1.37218967314475 7 1.2496747386344 4 4 0 -5.76441138786355 LTS-025 chr19 52250000 52693298 443299 * c(ZNF836, FPR1, FPR2, FPR3, ZNF615, ZNF841, PPP2R1A, ZNF350, ZNF649, ZNF613, ZNF614, ZNF577, ZNF616, ZNF432) 0.126315766363259 10 0.215979525778615 1.00562972002055 596 0.404463504909082 3 3 0 -6.84448352997483 LTS-025 chr19 52693299 52704961 11663 * PPP2R1A 0.468 1 NA 1.13343021972482 7 0.251842448859637 4 4 0 -5.76522946119973 LTS-025 chr19 52704962 52888620 183659 * c(ZNF480, ZNF610, ZNF880, PPP2R1A, MIR643, ZNF766) 0.423331407386467 14 0.127478418772541 0.995591508155674 321 0.447192900965205 4 2 2 -6.86792138167317 LTS-025 chr19 52888621 52888884 264 * ZNF880 0 1 NA 1.18187081462994 7 0.937615389724176 4 4 0 -5.76441048744851 LTS-025 chr19 52888885 53301346 412462 * c(ZNF534, ZNF578, ZNF600, ZNF808, ZNF880, ZNF701, ZNF83, ZNF28, ZNF137P, ZNF611, ZNF528) 0.248631512983645 10 0.229279935643939 1.01573725848062 404 0.348739220272095 4 3 1 -6.8127619580635 LTS-025 chr19 53301347 53301677 331 * ZNF28 0.485 1 NA 0.920462891083737 5 0.98136883993736 3 3 0 -5.7644102360978 LTS-025 chr19 53301678 53707045 405368 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, ERVV-1, ZNF320, ZNF321P, ZNF415, ZNF28, ZNF665, ZNF702P, ZNF347, ZNF468, ZNF160) 0.459233908164022 16 0.0318898494822412 0.968238166670339 480 0.328872943300143 4 2 2 -9.75559594564259 LTS-025 chr19 53707046 53727310 20265 * ZNF818P 0 1 NA 0.986519331852073 25 0.551553675236297 3 3 0 -5.76449876888316 LTS-025 chr19 53727311 53888534 161224 * c(BIRC8, ZNF525, VN1R2, VN1R4, ZNF677, FAM90A27P, ZNF765, ZNF845) 0.252228792862667 10 0.236480889526218 1.04617400910864 335 0.451799177205283 4 3 1 -6.74759931317044 LTS-025 chr19 53888535 53958126 69592 * c(TPM3P9, ZNF525, ZNF761, ZNF765) 0.434 1 NA 0.925567701702387 117 0.222705583436079 3 3 0 -5.7646444338386 LTS-025 chr19 53958127 54198559 240433 * c(MIR1323, MIR1283-1, ZNF813, LOC284379, ZNF761, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B) 0.417834382256259 14 0.132799857672372 0.98505962543382 305 0.392850936549365 4 2 2 -6.86255597578606 LTS-025 chr19 54198560 54245833 47274 * c(MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H) 0 1 NA 0.909743053184689 94 0.345688426667989 3 3 0 -5.76468334190065 LTS-025 chr19 54245834 54487632 241799 * c(MIR935, MIR1283-2, MIR371B, MIR372, MIR373, PRKCG, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, NLRP12, MYADM) 0.076798253680025 12 0.165629286679804 1.02641691069624 408 0.481798981838496 3 3 0 -6.77485538456536 LTS-025 chr19 54487633 54492922 5290 * CACNG8 0.456 1 NA 0.968684446832975 87 0.324768807206278 3 3 0 -5.76443517418949 LTS-025 chr19 54492923 54684763 191841 * c(OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, CACNG8, CACNG6, MBOAT7, LENG1) 0.195616912300835 19 0.234038995601135 1.04189516913872 633 0.461939748742836 4 3 1 -6.79948194839529 LTS-025 chr19 54684764 54704997 20234 * c(RPS9, TSEN34, MBOAT7) 0.466 1 NA 0.944263416921354 71 0.220463001910224 3 3 0 -5.76441287933034 LTS-025 chr19 54704998 54761007 56010 * c(LILRB5, LILRB3, RPS9, LILRA6) 0.414100414291164 12 0.0824668895908405 1.07647078298427 217 0.590396763225348 4 2 2 -6.91356114287818 LTS-025 chr19 54761008 54778306 17299 * c(LILRB2, LILRB5, LILRA6) 0 1 NA 1.15556631552942 17 0.555421355686781 4 4 0 -5.76456044426543 LTS-025 chr19 54778307 54800203 21897 * c(MIR4752, LILRB2, LILRA3, LILRA6) 0 3 0 1.07541458722934 85 0.279617237880442 0 0 0 -Inf LTS-025 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.14226705798365 39 0.226256950892697 0 NA NA -5.9301356753216 LTS-025 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.972 1 NA NA NA NA NA LTS-025 chr19 54818558 54849796 31239 * c(LILRA4, LILRA5) 0 7 0 1.05802016110645 75 1.04873884587482 0 0 0 -Inf LTS-025 chr19 54849797 54850418 622 * LILRA4 0.476 1 NA 1.05853296105564 11 0.635141086688619 3 3 0 -5.76442289725827 LTS-025 chr19 54850419 54973307 122889 * c(LENG8, LILRA4, LAIR1, TTYH1, LENG9) 0.44699171802226 9 0.0520600614675012 1.02219189579808 317 0.28404440011989 4 2 2 -7.89195015716156 LTS-025 chr19 54973308 55014839 41532 * c(CDC42EP5, LAIR2, LENG9) 0 1 NA 0.963525403211478 65 0.42986758471024 3 3 0 -5.76448465986956 LTS-025 chr19 55014840 55317559 302720 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR2, LILRP2, KIR3DX1) 0.271274806402917 17 0.226385586607296 0.975617291604261 483 0.67876621058208 4 3 1 -6.75554330261164 LTS-025 chr19 55317560 55328023 10464 * c(KIR2DS4, KIR3DL1) 0.473 1 NA 0.852406162991935 35 0.234284668474813 3 3 0 -5.76553149883642 LTS-025 chr19 55328024 55328078 55 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.94137030306127 3 0.105655099261701 3 NA NA -5.76441013482762 LTS-025 chr19 55328079 55328899 821 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.302 1 NA NA NA NA NA LTS-025 chr19 55328900 55351171 22272 * c(KIR2DS4, KIR3DL1) 0.463287165865983 6 0.0290516780926679 1.56475913955728 57 0.660393599883371 6 3 3 -10.1595642740188 LTS-025 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.349 1 NA NA NA NA NA LTS-025 chr19 55358616 55441902 83287 * c(NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NCR1) 0.333505624733539 6 0.188084466840477 0.918285528886415 132 0.4937628342309 3 2 1 -6.73334376046221 LTS-025 chr19 55441903 55447787 5885 * NLRP7 0 1 NA 0.912298517916467 21 0.710630293672958 3 3 0 -5.76441690635718 LTS-025 chr19 55447788 55494093 46306 * c(RNU6-64P, NLRP7, NLRP2) 0.140915759268591 10 0.231897966068413 1.03368689723954 112 0.896933655105121 7 6 1 -6.75411168549091 LTS-025 chr19 55494094 55494651 558 * NLRP2 0.489 1 NA 1.05989747430805 9 0.362902535124791 3 3 0 -5.7644459714242 LTS-025 chr19 55494652 55558803 64152 * c(RDH13, GP6, NLRP2) 0.245810883392712 9 0.225628443340915 1.05679628644611 141 0.658947409702625 4 3 1 -6.73910009260404 LTS-025 chr19 55558804 55559740 937 * RDH13 0.48 1 NA 1.16228805425405 7 1.18847140719257 4 4 0 -5.76441161615857 LTS-025 chr19 55559741 55660537 100797 * c(RDH13, PPP1R12C, EPS8L1, TNNT1) 0.412632948666606 11 0.143894026662301 0.991483811710891 287 0.271913694281814 4 2 2 -6.82848234001509 LTS-025 chr19 55660538 55668052 7515 * c(TNNI3, TNNT1) 0 1 NA 0.982634439131717 27 0.446709278487899 3 3 0 -5.76445219466664 LTS-025 chr19 55668053 55914374 246322 * c(COX6B2, TMEM190, PPP6R1, HSPBP1, TMEM86B, UBE2S, TMEM150B, FAM71E2, DNAAF3, IL11, TMEM238, PTPRH, RPL28, SYT5, TNNI3, BRSK1, KMT5C) 0.313821428889569 32 0.222827737512274 1.03351562817512 904 0.338002901127318 3 2 1 -6.74757229775103 LTS-025 chr19 55914375 55943280 28906 * c(UBE2S, SHISA7) 0 1 NA 0.950980466560894 29 0.887584333050027 3 3 0 -5.76441251722578 LTS-025 chr19 55943281 56369072 425792 * c(SBK3, ZNF865, U2AF2, ZNF524, ZNF784, NLRP4, ZNF579, NLRP11, SSC5D, CCDC106, EPN1, NLRP9, RFPL4A, ZNF580, ZNF581, NAT14, SBK2, SHISA7, RFPL4AL1, ISOC2, FIZ1, ZNF628) 0.127490664623307 17 0.202606217603914 1.05319359129444 997 0.560137695604755 3 3 0 -6.86460251198478 LTS-025 chr19 56369073 56369189 117 * NLRP4 0.448 1 NA 0.783817663374834 3 0.537829898759822 3 3 0 -5.76441818494577 LTS-025 chr19 56369190 56424443 55254 * c(NLRP13, NLRP4) 0.350475874491027 19 0.193108020554143 1.09426194163609 141 0.760430316572607 4 2 2 -6.73904781880635 LTS-025 chr19 56424444 56467168 42725 * c(NLRP13, NLRP8) 0 1 NA 1.05094660884742 71 0.57297091586095 3 3 0 -5.76536092278968 LTS-025 chr19 56467169 56671318 204150 * c(NLRP8, NLRP5, ZNF787, ZNF444) 0.260887584465542 10 0.251169265635746 1.0539132979812 218 0.451835030130616 4 3 1 -6.74823866132208 LTS-025 chr19 56671319 56688570 17252 * c(ZNF444, GALP) 0.413 1 NA 0.861265470759425 7 0.176674303518677 3 3 0 -5.76701721434969 LTS-025 chr19 56688571 56937612 249042 * c(ZNF542P, ZNF582, ZNF583, ZSCAN5B, ZNF582-AS1, ZSCAN5A, GALP) 0.340112756127421 10 0.229065347299266 1.01138187029377 282 0.30410353426798 3 2 1 -6.74252335542509 LTS-025 chr19 56937613 56953585 15973 * ZNF667 0.469 1 NA 0.920567815358744 49 0.241292006670327 3 3 0 -5.76449052170017 LTS-025 chr19 56953586 57323357 369772 * c(ZNF667-AS1, ZFP28, SMIM17, ZIM2, ZNF470, PEG3, ZNF471, ZNF71, ZNF667, ZNF835) 0.461976095438997 11 0.0325713203461405 1.06292973053032 413 0.701244368727777 4 2 2 -9.66714568860584 LTS-025 chr19 57323358 57325783 2426 * c(PEG3-AS1, ZIM2, PEG3) 0 1 NA 1.06714021339047 51 0.425530637131165 3 3 0 -5.76453698723309 LTS-025 chr19 57325784 57956538 630755 * c(MIMT1, TRAPPC2B, ZNF460, ZIM3, ZNF543, ZNF548, ZIM2, ZNF547, ZNF749, ZNF805, DUXA, PEG3, ZNF304, USP29, AURKC, ZNF17, ZNF264) 0.138025577967652 11 0.233585219021783 1.06559132082609 729 0.481622078940612 3 3 0 -6.8715764901943 LTS-025 chr19 57956539 57956828 290 * ZNF749 0.493 1 NA 1.05499480685113 7 0.21850542109435 3 3 0 -5.76445749994575 LTS-025 chr19 57956829 58003728 46900 * c(ZNF749, ZNF772, VN1R1, ZNF419) 0.467727790669767 20 0.0257667165973961 0.956429058364835 186 0.324951774438222 4 2 2 -10.8875560213596 LTS-025 chr19 58003729 58004335 607 * ZNF419 0 1 NA 1.03720975500589 9 1.0231615762484 3 3 0 -5.76441341606402 LTS-025 chr19 58004336 58269103 264768 * c(ZNF211, ZNF550, ZSCAN4, ZNF549, ZIK1, ZNF776, ZNF530, ZNF773, ZNF416, ZNF134, ZNF154, ZNF419, ZNF671, ZNF587, ZNF551) 0.231517153180786 19 0.230136166151173 1.01162237957924 694 0.444450397666089 4 3 1 -6.77693753589027 LTS-025 chr19 58269104 58269173 70 * c(ZNF776, ZNF587) 0.373 1 NA 0.846 1 NA NA NA NA NA LTS-025 chr19 58269174 58943576 674403 * c(A1BG, LOC100128398, ZNF587B, MIR4754, ZNF256, ZNF274, ZNF837, C19orf18, ZNF418, ZNF417, ZNF497, ZNF584, FKBP1AP1, ZNF544, ZNF776, ZSCAN1, ZSCAN22, A1BG-AS1, ZNF586, RPS5, RNF225, ZSCAN18, ZNF814, ZNF8, ZNF135, ZNF329, ZNF552, ZNF606, ZNF587) 0.400118317518539 49 0.140429945979806 1.00532355516902 1426 0.324745740695698 3 2 1 -6.89502428668737 LTS-025 chr19 58943577 58945772 2196 * ZNF132 0 1 NA 0.926816508246893 23 0.46643116069575 3 3 0 -5.76441155814951 LTS-025 chr19 58945773 59074653 128881 * c(MZF1-AS1, TRIM28, SLC27A5, ZNF324, CHMP2A, ZNF324B, ZNF446, MZF1, ZNF132, ZBTB45, UBE2M) 0.236477899607599 15 0.230330032365568 1.01572521362546 409 0.480439040491667 4 3 1 -6.75442138318555 LTS-025 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 1.06771991197601 35 0.189658507797125 3 NA NA -5.76689185315282 LTS-025 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.458 1 NA 1.04465684307662 57 0.232389892271749 3 3 0 -5.7765091077184 LTS-025 chr20 168467 368905 200439 * c(C20orf96, DEFB129, DEFB128, DEFB132, TRIB3, SOX12, NRSN2, ZCCHC3) 0.463518181536488 13 0.0281702698347762 0.983118388069873 379 0.624351892145503 4 2 2 -10.3121157350724 LTS-025 chr20 368906 372230 3325 * TRIB3 0 1 NA 1.06187557748986 9 0.763760833711124 3 3 0 -5.76445994521272 LTS-025 chr20 372231 854940 482710 * c(RBCK1, SLC52A3, TBC1D20, SRXN1, CSNK2A1, ANGPT4, TRIB3, TCF15, FAM110A, SCRT2) 0.333965564912116 22 0.198171954061677 1.02550712008543 644 0.376860116034021 3 2 1 -6.74824453092469 LTS-025 chr20 854941 861814 6874 * ANGPT4 0 1 NA 1.42784382110419 13 0.669776809361876 5 5 0 -5.76445382612776 LTS-025 chr20 861815 1286956 425142 * c(RSPO4, C20orf202, ANGPT4, TMEM74B, RAD21L1, PSMF1, SNPH) 0.105779488526408 19 0.200556783459979 1.11786310236562 421 0.597957076344951 3 3 0 -6.82693161288344 LTS-025 chr20 1286957 1287051 95 * SNPH 0.489 1 NA 1.36699766866631 3 1.00479998009554 4 4 0 -5.76441070658864 LTS-025 chr20 1287052 1424303 137252 * c(SDCBP2-AS1, FKBP1A-SDCBP2, FKBP1A, SDCBP2, NSFL1C, SNPH) 0.42714608311461 12 0.137537515543281 1.08145977019437 212 0.342806995341002 4 2 2 -6.85287826980869 LTS-025 chr20 1424304 1426741 2438 * NSFL1C 0 1 NA 1.10917172086293 17 0.40235055683848 4 4 0 -5.7645151320579 LTS-025 chr20 1426742 1559302 132561 * c(SIRPB1, SIRPD, SIRPB2, NSFL1C) 0.27626424535898 9 0.232526939896817 1.06497521499595 221 0.499633281642698 4 3 1 -6.74170692224699 LTS-025 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.093 1 NA NA NA NA NA LTS-025 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0804787704738797 39 0.0287652793406662 0 NA NA -7.15478250550169 LTS-025 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.176 1 NA NA NA NA NA LTS-025 chr20 1600391 2842662 1242272 * c(SNORD119, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, TMC2, C20orf141, SIRPA, STK35, IDH3B, TGM6, PDYN, SIRPG, CPXM1, EBF4, VPS16, PCED1A, SNRPB, SNORA51, SNORD110, TGM3, ZNF343) 0.226721852322576 21 0.237791565391686 1.07416522762352 1107 0.375510096140427 4 3 1 -6.84945771488228 LTS-025 chr20 2842663 2843053 391 * VPS16 0.474 1 NA 0.951096007804751 7 0.28309387640347 3 3 0 -5.7644104580821 LTS-025 chr20 2843054 3203950 360897 * c(UBOX5-AS1, UBOX5, GNRH2, ITPA, OXT, AVP, PTPRA, FASTKD5, VPS16, MRPS26, DDRGK1, LZTS3) 0.406758560718206 17 0.15304471184438 1.02111093341303 627 0.236472424729694 3 2 1 -6.90534276025642 LTS-025 chr20 3203951 3208349 4399 * c(ITPA, SLC4A11) 0 1 NA 1.13463732779344 17 0.22958600848945 4 4 0 -5.76477283229087 LTS-025 chr20 3208350 3270770 62421 * c(C20orf194, SLC4A11) 0.223444044376862 11 0.239723287449206 1.13684266932137 243 0.495344578178501 5 4 1 -6.7469760011013 LTS-025 chr20 3270771 3277602 6832 * C20orf194 0.421 1 NA 1.11033272822812 21 0.272515434250543 4 4 0 -5.76503924546875 LTS-025 chr20 3277603 3838441 560839 * c(CENPB, HSPA12B, SPEF1, C20orf194, C20orf27, AP5S1, MAVS, GFRA4, SIGLEC1, ADAM33, ATRN, CDC25B) 0.416136538023206 36 0.133426357430392 1.03280780653928 1109 0.313292180705679 4 2 2 -6.91687939940154 LTS-025 chr20 3838442 3846500 8059 * MAVS 0 1 NA 1.18380802173079 35 0.827479748666867 4 4 0 -5.7644230063373 LTS-025 chr20 3846501 8769394 4922894 * c(MIR103B2, PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, TMEM230, MIR103A2, PCNA, TRMT6, HAO1, SMOX, CRLS1, FERMT1, PRNP, TMX4, GPCPD1, MAVS, LOC643406, BMP2, LINC01433, PANK2, MCM8, CDS2, RASSF2, SLC23A2) 0.333979712921442 63 0.202142758535816 1.05412821363451 2457 0.515858517162956 3 2 1 -6.87263952020239 LTS-025 chr20 8769395 8864203 94809 * PLCB1 0.303980401109568 4 0.213405716886873 1.15607525443868 68 0.335640604266916 4 3 1 -6.75621159171303 LTS-025 chr20 8864204 8865006 803 * PLCB1 0.405 1 NA 1.24938653697001 21 0.372568331859757 4 4 0 -5.76441057109489 LTS-025 chr20 8865007 9560846 695840 * c(PLCB1, LAMP5, PLCB4, PAK5) 0.0411516880461015 9 0.147 1.21143313029856 378 0.426633998543126 4 4 0 -6.73870287804254 LTS-025 chr20 9560847 10036202 475356 * c(SNAP25-AS1, PAK5, ANKEF1) 0.414 1 NA 1.03782834766634 85 0.282748285577824 3 3 0 -5.79833738198021 LTS-025 chr20 10036203 13846191 3809989 * c(SNAP25-AS1, ISM1-AS1, SLX4IP, ISM1, JAG1, BTBD3, LOC339593, ESF1, SPTLC3, TASP1, ANKEF1, SNAP25, NDUFAF5, SEL1L2, MKKS) 0.358452707731646 21 0.202998111649674 1.08506509369555 1055 0.342296601255435 4 2 2 -7.04636145669004 LTS-025 chr20 13846192 13894597 48406 * SEL1L2 NA 0 NA 1.06862030845032 47 0.198971629958179 3 NA NA -5.77622529852235 LTS-025 chr20 13894598 13895706 1109 * SEL1L2 NA 0 NA 0.774 1 NA NA NA NA NA LTS-025 chr20 13895707 13971235 75529 * SEL1L2 0.102 1 NA 0.696747404739395 21 0.280512142169928 2 2 0 -5.76759106783002 LTS-025 chr20 13971236 14830731 859496 * c(MACROD2, FLRT3, SEL1L2) 0.0198725071055001 4 0.0285 0.688694111769579 135 0.258187054717855 2 2 0 -7.35792390255658 LTS-025 chr20 14830732 15210541 379810 * c(MACROD2-AS1, MACROD2) NA 0 NA 0.965 1 NA NA NA NA NA LTS-025 chr20 15210542 17463931 2253390 * c(MACROD2, PCSK2, KIF16B, OTOR, SNRPB2) 0.179677400264176 9 0.239316271443832 1.09845137392806 536 0.48269127193038 4 3 1 -6.88576402952216 LTS-025 chr20 17463932 17474690 10759 * c(PCSK2, BFSP1) 0.436 1 NA 1.21471091482057 31 0.343397963433569 4 4 0 -5.76442581673657 LTS-025 chr20 17474691 18005113 530423 * c(DSTN, BANF2, SNX5, OVOL2, RRBP1, BFSP1, SNORD17, MGME1) 0.460517833237866 11 0.0417368378817039 1.01564599614617 427 0.264055984877049 4 2 2 -8.94336731023106 LTS-025 chr20 18005114 18005332 219 * OVOL2 0 1 NA 1.42546597164064 3 1.07285149640262 5 5 0 -5.76441070120397 LTS-025 chr20 18005333 18434646 429314 * c(PET117, LINC00851, DZANK1, KAT14, OVOL2, ZNF133) 0.271486486589023 17 0.233648381497648 1.04859541343162 353 0.412560342572868 4 3 1 -6.77406210377398 LTS-025 chr20 18434647 18445963 11317 * DZANK1 0.472 1 NA 0.899565286665882 15 0.389831611999701 3 3 0 -5.76450132502044 LTS-025 chr20 18445964 20037242 1591279 * c(C20orf78, LOC100130264, LOC100270804, MIR3192, SEC23B, POLR3F, RBBP9, SCP2D1, CFAP61, LINC00652, LINC00493, NAA20, CRNKL1, RIN2, DZANK1, SLC24A3, DTD1) 0.447254631695618 17 0.0253371385171115 1.08121723187861 773 0.325855507578491 4 2 2 -10.1203464049177 LTS-025 chr20 20037243 20051506 14264 * CFAP61 0 1 NA 1.17359813101216 9 0.460484829041932 4 4 0 -5.76451658299494 LTS-025 chr20 20051507 20371744 320238 * c(CFAP61, INSM1, RALGAPA2) 0.104392396695983 9 0.207634962801976 1.1402256398253 280 0.858764792786265 3 3 0 -6.80800169836137 LTS-025 chr20 20371745 20372452 708 * RALGAPA2 0.493 1 NA 1.12046203388892 15 0.130870819622143 4 4 0 -5.76464649708697 LTS-025 chr20 20372453 21695131 1322679 * c(XRN2, NKX2-2, PAX1, KIZ, RALGAPA2, NKX2-4) 0.198492917782175 9 0.238226316299811 1.08125223475589 659 0.525803022717858 4 3 1 -6.82868212517501 LTS-025 chr20 21695132 23016970 1321839 * c(LINC01432, LINC00261, LOC284788, FOXA2, PAX1, SSTR4) 0.429 1 NA 1.14339206861308 101 0.300370616946386 4 4 0 -5.81665923072853 LTS-025 chr20 23016971 23356862 339892 * c(LINC00656, CD93, NXT1, NAPB, GZF1, SSTR4, THBD) 0.415433564521348 15 0.165370493135867 1.08358003213756 423 0.274277750044949 4 2 2 -6.82742122998435 LTS-025 chr20 23356863 23357328 466 * NAPB 0.026 1 NA 0.899284749758379 11 0.39498280745093 3 3 0 -5.76441383539559 LTS-025 chr20 23357329 25753980 2396652 * c(CST8, CSTL1, CST9L, CST9, NANP, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, NINL, ABHD12, ZNF337, LOC284798, VSX1, FLJ33581, APMAP, PYGB, NAPB, FAM182B, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.204109953326873 40 0.228413523725091 1.06698553997906 1485 0.447538666513849 4 3 1 -6.92448727094928 LTS-025 chr20 25753981 25900162 146182 * FAM182B 0.498 1 NA 1.26235660918195 23 0.533852890870612 4 4 0 -5.76455302498563 LTS-025 chr20 25900163 26061859 161697 * c(LOC100134868, FAM182A) 0.377 1 NA 0.881450774341967 5 0.439036672727917 3 3 0 -5.76657013870517 LTS-025 chr20 26061860 26061919 60 * FAM182A NA 0 NA 0.552 1 NA NA NA NA NA LTS-025 chr20 26061920 26188981 127062 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.342883848460914 15 0.141061114752571 0.778160555920103 47 0.679678972080115 3 2 1 -6.7438712398868 LTS-025 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.759 1 NA NA NA NA NA LTS-025 chr20 29625845 29625876 32 * FRG1BP 0.307 1 NA 1.073 1 NA NA NA NA NA LTS-025 chr20 29625877 30527065 901189 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, MLLT10P1, LINC00028, TTLL9, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.308595968918598 33 0.187488489545682 1.04592808923223 808 0.438599135838312 3 2 1 -6.7721180109811 LTS-025 chr20 30527066 30585466 58401 * c(TTLL9, XKR7, PDRG1) 0 1 NA 1.09118406415168 99 0.615669260414164 4 4 0 -5.76583505830542 LTS-025 chr20 30585467 31367685 782219 * c(TSPY26P, NOL4L, CCM2L, LOC149950, COMMD7, ASXL1, DNMT3B, POFUT1, C20orf203, HCK, XKR7, PLAGL2, KIF3B, TM9SF4) 0.0409047394107806 16 0.114 1.02619300080883 1226 0.439140061930219 3 3 0 -6.75255680009947 LTS-025 chr20 31367686 31374520 6835 * DNMT3B 0.47 1 NA 1.10140372415684 27 0.127555864528051 4 4 0 -5.76773231166132 LTS-025 chr20 31374521 31480961 106441 * c(DNMT3B, MAPRE1) 0.276682616980422 9 0.221116171075548 1.0347050696201 238 0.482054249290413 4 3 1 -6.74362288239436 LTS-025 chr20 31480962 31494827 13866 * character(0) 0 1 NA 1.049263372193 21 1.16920058770329 3 3 0 -5.7644821083282 LTS-025 chr20 31494828 32295541 800714 * c(PXMP4, BPIFB6, BPIFA3, C20orf144, BPIFA2, SUN5, BPIFB4, ACTL10, E2F1, BPIFA4P, BPIFB3, BPIFA1, CDK5RAP1, NECAB3, SNTA1, BPIFB2, CBFA2T2, BPIFB1) 0.148864554841189 34 0.228042192440296 1.07527521490001 1210 0.505817343703197 3 3 0 -6.91098809034848 LTS-025 chr20 32295542 32354767 59226 * c(PXMP4, ZNF341) 0 1 NA 1.09092096200647 73 0.449520888190227 4 4 0 -5.76713077062206 LTS-025 chr20 32354768 33862587 1507820 * c(MIR499B, MIR4755, PROCR, MMP24, CHMP4B, PIGU, HMGB3P1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, ASIP, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2) 0 12 0 1.05434954680366 1730 0.375591832519012 0 0 0 -Inf LTS-025 chr20 33862588 33864247 1660 * c(MMP24-AS1, MMP24, EDEM2) 0.452 1 NA 1.09728870201722 37 0.265390108914989 4 4 0 -5.76460888582942 LTS-025 chr20 33864248 34062642 198395 * c(MMP24-AS1, MMP24, CEP250, FAM83C, EIF6, UQCC1, EDEM2, GDF5) 0.38729448214445 11 0.14646023351067 0.996254009691678 419 0.351333998256255 4 2 2 -6.78730756009795 LTS-025 chr20 34062643 34062710 68 * CEP250 0.46 1 NA 0.762254193063189 3 0.148193567111846 2 2 0 -5.76445948470666 LTS-025 chr20 34062711 34144851 82141 * c(CEP250, C20orf173, ERGIC3) 0.181189434878778 9 0.246876487337292 0.992409176391719 277 0.691790854054282 5 4 1 -6.76439541741616 LTS-025 chr20 34144852 34147998 3147 * ERGIC3 0.473 1 NA 1.12722975418843 35 0.249037734645396 4 4 0 -5.76466588024452 LTS-025 chr20 34147999 34775551 627553 * c(RBM12, ROMO1, CNBD2, EPB41L1, PHF20, SCAND1, NORAD, SPAG4, CPNE1, NFS1, RBM39) 0.40217931947519 36 0.144090676366908 0.978030049558271 980 0.269867180663346 3 2 1 -6.88694294251345 LTS-025 chr20 34775552 34776446 895 * EPB41L1 0 1 NA 0.764390525500143 9 0.432331405803979 2 2 0 -5.76449016481116 LTS-025 chr20 34776447 35422749 646303 * c(TGIF2-C20orf24, MYL9, SOGA1, EPB41L1, DLGAP4, AAR2, C20orf24, NDRG3, TGIF2, DSN1, SLA2) 0.0527612216721229 23 0.162224518696784 1.0553696214453 981 0.508572600873947 3 3 0 -6.7594498911976 LTS-025 chr20 35422750 35422936 187 * SOGA1 0.498 1 NA 0.980690270328529 5 0.468312716034916 3 3 0 -5.7644109969926 LTS-025 chr20 35422937 36627661 1204725 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, SAMHD1, GHRH, NNAT, CTNNBL1, RBL1, RPN2, MANBAL, SRC, TTI1) 0.241167227911258 22 0.236250971733497 1.00714951113605 1106 0.351931339978474 3 2 1 -6.84367434484732 LTS-025 chr20 36627662 36662022 34361 * c(RPRD1B, TTI1) 0.433 1 NA 1.00076962015604 69 0.295723086093669 3 3 0 -5.76529972983657 LTS-025 chr20 36662023 36889021 226999 * c(RPRD1B, TGM2, KIAA1755) 0.470229690880732 10 0.0410208619011243 1.07905762424424 392 0.267291497148299 4 2 2 -9.17653084589741 LTS-025 chr20 36889022 36962818 73797 * c(BPI, KIAA1755) 0 1 NA 1.12221017715628 123 0.348270628431036 4 4 0 -5.76778179541111 LTS-025 chr20 36962819 37396262 433444 * c(SNHG11, SLC32A1, ADIG, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, BPI, SNORA71E, SNORA71C, SNORA71D, ACTR5) 0.251621103703435 19 0.217781974240509 1.04861950096655 591 0.54502247631396 4 3 1 -6.75841967484985 LTS-025 chr20 37396263 37464521 68259 * c(PPP1R16B, ACTR5) 0 1 NA 0.892428510158689 19 0.432048520396272 3 3 0 -5.76502971901456 LTS-025 chr20 37464522 39809154 2344633 * c(ZHX3, PPP1R16B, LOC339568, PLCG1, DHX35, TOP1, FAM83D, MAFB) 0.0829792608498253 10 0.169244596171734 1.03269965553549 804 0.314757594419673 3 3 0 -6.89990449615868 LTS-025 chr20 39809155 39811275 2121 * ZHX3 0.49 1 NA 0.887238077478208 51 0.226593589719482 3 3 0 -5.76449630327547 LTS-025 chr20 39811276 40714540 903265 * c(PTPRT, ZHX3, LPIN3, CHD6, EMILIN3) 0.308976880173959 18 0.214582015034976 1.08075255352345 829 0.382052902795681 3 2 1 -6.80908186911941 LTS-025 chr20 40714541 40727147 12607 * PTPRT 0 1 NA 1.35122845275766 3 0.676062373848252 4 4 0 -5.76454293080032 LTS-025 chr20 40727148 42805660 2078513 * c(SGK2, PTPRT, GTSF1L, L3MBTL1, MYBL2, IFT52, JPH2, SRSF6, TOX2) 0.110329101131384 18 0.21819722594883 1.07021375499422 828 0.562874662501598 3 3 0 -6.86715968548787 LTS-025 chr20 42805661 42815190 9530 * JPH2 0.464 1 NA 1.02795616096633 25 0.207450331404893 3 3 0 -5.76544432989823 LTS-025 chr20 42815191 42979879 164689 * c(OSER1-AS1, FITM2, R3HDML, OSER1, JPH2, GDAP1L1) 0.450481851533926 11 0.0341118481149612 1.01895932258747 259 0.276775199285469 4 2 2 -9.08746761628514 LTS-025 chr20 42979880 43053212 73333 * c(MIR3646, HNF4A) 0 1 NA 1.090007717803 71 0.278183884583293 4 4 0 -5.77331596253001 LTS-025 chr20 43053213 43560667 507455 * c(ADA, SERINC3, PKIG, RIMS4, HNF4A, KCNK15, YWHAB, LINC01260, TTPAL, PABPC1L, WISP2) 0.232957633339818 17 0.223529294698112 1.05804120928506 714 0.354837098438422 4 3 1 -6.80215070408785 LTS-025 chr20 43560668 43561654 987 * PABPC1L 0.349 1 NA 1.15196860590107 19 0.632052287051674 4 4 0 -5.76441738269849 LTS-025 chr20 43561655 43723627 161973 * c(STK4-AS1, TOMM34, KCNS1, STK4, PABPC1L) 0.382965023528909 10 0.143240628935291 1.01689481040722 329 0.337038210748403 4 2 2 -6.77146362674425 LTS-025 chr20 43723628 43739217 15590 * c(WFDC5, KCNS1) 0 1 NA 1.00578053759745 51 0.684492387273441 3 3 0 -5.76449822748567 LTS-025 chr20 43739218 44238741 499524 * c(EPPIN-WFDC6, WFDC2, SPINT3, RBPJL, WFDC12, WFDC6, WFDC5, WFDC9, TP53TG5, PIGT, PI3, DBNDD2, EPPIN, SDC4, SEMG1, SEMG2, SLPI, SYS1-DBNDD2, MATN4, SYS1, WFDC8) 0.203468894604131 9 0.228601241855283 1.054841273333 777 0.442660130752522 4 3 1 -6.81280633209452 LTS-025 chr20 44238742 44258217 19476 * WFDC9 0.491 1 NA 1.32927055603587 7 0.243137429294236 4 4 0 -5.76546901625212 LTS-025 chr20 44258218 44523782 265565 * c(ACOT8, UBE2C, DNTTIP1, SPATA25, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC13, WFDC11, WFDC9, WFDC10B, SPINT4, CTSA, TNNC2, SNX21, ZSWIM1) 0.421155469955787 31 0.142106267975236 1.01987401887033 640 0.321452950710886 4 2 2 -6.87072271104441 LTS-025 chr20 44523783 44526306 2524 * CTSA 0 1 NA 1.1451308367264 7 0.545414346642816 4 4 0 -5.76443946046543 LTS-025 chr20 44526307 44671950 145644 * c(MMP9, PLTP, CTSA, SLC12A5, ZNF335, PCIF1) 0.212751565091613 18 0.230186369504978 1.06649526831394 484 0.42372920957502 4 3 1 -6.77316245026546 LTS-025 chr20 44671951 44676727 4777 * SLC12A5 0.478 1 NA 1.15056030962902 29 0.250798650423377 4 4 0 -5.76464097089707 LTS-025 chr20 44676728 44806727 130000 * c(SLC12A5, NCOA5, CDH22, CD40) 0.295601456717775 11 0.213659244422685 1.07640859233603 301 0.511662821647693 4 3 1 -6.7517562318029 LTS-025 chr20 44806728 44815404 8677 * CDH22 0 1 NA 1.15329637115086 9 1.12642210116812 4 4 0 -5.76442955895418 LTS-025 chr20 44815405 45838885 1023481 * c(ZNF663P, MIR3616, TP53RK, OCSTAMP, EYA2, ZMYND8, SLC35C2, ZNF334, ELMO2, CDH22, SLC13A3, MKRN7P, SLC2A10) 0.171830256913883 17 0.224068611472153 1.0196920590126 827 0.396899606941903 3 3 0 -6.97234556149086 LTS-025 chr20 45838886 45878118 39233 * ZMYND8 0.465 1 NA 1.04166171968845 87 0.257587865955516 3 3 0 -5.76806151550509 LTS-025 chr20 45878119 47241805 1363687 * c(LOC100131496, ZMYND8, LINC00494, SULF2, PREX1, NCOA3) 0.370510485849389 12 0.179578715753051 1.03016645193109 451 0.30210472734192 3 2 1 -6.8355352348151 LTS-025 chr20 47241806 47244391 2586 * PREX1 0 1 NA 1.13497535718164 21 0.179014936860162 4 4 0 -5.76475832637671 LTS-025 chr20 47244392 48456055 1211664 * c(SNORD12B, ARFGEF2, CSE1L, SLC9A8, SNORD12C, KCNB1, ZFAS1, DDX27, ZNFX1, PTGIS, PREX1, STAU1, SNORD12, B4GALT5) 0.161178396285009 22 0.210585043642849 1.0165910935302 1420 0.39606723722061 3 3 0 -6.9670017388854 LTS-025 chr20 48456056 48491258 35203 * SLC9A8 0.466 1 NA 0.964379226001545 35 0.22738743452124 3 3 0 -5.76465321367876 LTS-025 chr20 48491259 48808011 316753 * c(TRERNA1, CEBPB, SLC9A8, TMEM189, TMEM189-UBE2V1, RNF114, SNAI1, UBE2V1, SPATA2) 0.449145647324559 19 0.038582333926657 0.989063248874582 479 0.256875057833994 4 2 2 -8.75908049984361 LTS-025 chr20 48808012 49458351 650340 * c(CEBPB, FAM65C, LINC01270, BCAS4, PTPN1, MIR645, PARD6B) 0 1 NA 0.9948599062632 401 0.381812041863167 3 3 0 -5.7726470484036 LTS-025 chr20 49458352 50773068 1314717 * c(MIR3194, ATP9A, ADNP, MOCS3, KCNG1, NFATC2, BCAS4, ZFP64, SALL4, DPM1) 0.305211995601941 39 0.205410415014651 1.03720683836736 987 0.512069532474733 3 2 1 -6.77015159696715 LTS-025 chr20 50773069 50781725 8657 * ZFP64 0.457 1 NA 1.16748092019215 25 0.118280838121256 4 4 0 -5.76559847219003 LTS-025 chr20 50781726 52786219 2004494 * c(MIR4756, TSHZ2, CYP24A1, SUMO1P1, ZFP64, ZNF217, BCAS1) 0.479837104019457 16 0.0201080415091409 1.00206468062683 468 0.291461535821788 4 2 2 -13.1946054970228 LTS-025 chr20 52786220 52790352 4133 * CYP24A1 0 1 NA 1.13085607250004 25 0.453756917302646 4 4 0 -5.76450435097879 LTS-025 chr20 52790353 54941124 2150772 * c(FAM210B, CBLN4, CYP24A1, MC3R, PFDN4, DOK5) 0.341823835134789 9 0.149534648530403 1.13739722643183 221 0.289515694267994 4 2 2 -6.85540968919329 LTS-025 chr20 54941125 54941140 16 * FAM210B 0.288 1 NA 0.784404870546917 3 0.334904463989359 3 3 0 -5.76441279739885 LTS-025 chr20 54941141 55101067 159927 * c(FAM210B, GCNT7, CSTF1, FAM209A, FAM209B, RTFDC1, CASS4, AURKA) 0.0473560143465112 9 0.179671304825723 1.0233053008637 365 0.622552630071621 3 3 0 -6.73738872288281 LTS-025 chr20 55101068 55743803 642736 * c(FAM209A, FAM209B, TFAP2C) 0.485 1 NA 1.0335798060532 101 0.30162209881746 3 3 0 -5.80139252199816 LTS-025 chr20 55743804 56139403 395600 * c(MIR4325, MTRNR2L3, MIR5095, CTCFL, SPO11, PCK1, RBM38, BMP7, RAE1) 0.433171339133271 14 0.128226469469168 1.04936050226744 496 0.29062263961069 4 2 2 -6.95625196650863 LTS-025 chr20 56139404 56140095 692 * PCK1 0 1 NA 1.26272000722795 7 1.25580886474093 4 4 0 -5.76441026000077 LTS-025 chr20 56140096 57292832 1152737 * c(MIR4532, C20orf85, APCDD1L-AS1, APCDD1L, PCK1, PPP4R1L, PMEPA1, RAB22A, NPEPL1, ZBP1, STX16, VAPB) 0.290025389135701 32 0.216125775432852 1.05328846811835 1100 0.42573565654119 3 2 1 -6.80162663779137 LTS-025 chr20 57292833 57431024 138192 * c(MIR298, GNAS-AS1, GNAS, MIR296) 0.445 1 NA 1.00066606119011 117 0.220249269334768 3 3 0 -5.77083250916426 LTS-025 chr20 57431025 57768743 337719 * c(SLMO2-ATP5E, ZNF831, CTSZ, GNAS, PRELID3B, ATP5E, NELFCD, TUBB1) 0.443664949891803 13 0.131810761787788 1.00867720747272 489 0.285441798165225 4 2 2 -7.0230392794742 LTS-025 chr20 57768744 57769096 353 * ZNF831 0 1 NA 1.24267046328645 7 1.65530202969845 4 4 0 -5.76441013727165 LTS-025 chr20 57769097 60292822 2523726 * c(CDH4, LOC100506384, MIR4533, SYCP2, PHACTR3, ZNF831, EDN3, C20orf197, MIR646HG, PPP1R3D, CDH26, FAM217B) 0.219253174185583 25 0.226655296283439 1.03859106196845 947 0.374837856636203 3 2 1 -6.9761925706111 LTS-025 chr20 60292823 60292863 41 * CDH4 0.482 1 NA 0.986 1 NA NA NA NA NA LTS-025 chr20 60292864 60777070 484207 * c(CDH4, MIR1257, LSM14B, SS18L1, MTG2, PSMA7, TAF4) 0.294301116706664 11 0.221305136940749 1.08891875057637 530 0.535942809661381 4 3 1 -6.76031416402015 LTS-025 chr20 60777071 60777155 85 * MTG2 0.446 1 NA 1.27259007581839 3 0.705981822240016 4 4 0 -5.7644102233816 LTS-025 chr20 60777156 60885563 108408 * c(ADRM1, HRH3, MTG2, LAMA5, OSBPL2) 0.0381195972031909 9 0.151 1.08616561010161 259 0.516968543234463 3 3 0 -6.73820940297361 LTS-025 chr20 60885564 60887581 2018 * LAMA5 0.484 1 NA 1.08168229088403 42 0.239125595707879 4 4 0 -5.76478400803546 LTS-025 chr20 60887582 60986019 98438 * c(MIR4758, RBBP8NL, LAMA5, RPS21, CABLES2) 0.419705466342991 24 0.134604674800918 1.06634125948586 486 0.314913238447279 4 2 2 -6.83177983806079 LTS-025 chr20 60986020 60989497 3478 * RBBP8NL 0 1 NA 1.12685236902954 27 0.240078287326414 4 4 0 -5.76471650165045 LTS-025 chr20 60989498 61303500 314003 * c(SLCO4A1-AS1, MIR1-1HG, GATA5, RBBP8NL, C20orf166-AS1, SLCO4A1, MIR1-1, MIR133A2) 0.213692551997241 13 0.240242452321474 1.11029604152592 277 0.644794095973328 4 3 1 -6.76441826518789 LTS-025 chr20 61303501 61303566 66 * SLCO4A1 0.485 1 NA 1.64427180948076 3 0.345278148743879 5 5 0 -5.76441183950448 LTS-025 chr20 61303567 61445312 141746 * c(LINC00659, OGFR-AS1, OGFR, SLCO4A1, NTSR1, MRGBP) 0.443767053333406 14 0.0289414908066238 1.00960580358444 258 0.234429488345391 4 2 2 -9.36597303478072 LTS-025 chr20 61445313 61453101 7789 * c(OGFR, COL9A3) 0 1 NA 0.892147183288845 41 0.194878395478797 3 3 0 -5.76476174993814 LTS-025 chr20 61453102 61867330 414229 * c(DPH3P1, LINC00029, LINC01056, TCFL5, DIDO1, BHLHE23, COL9A3, MIR124-3, YTHDF1, GID8, SLC17A9, LOC63930, HAR1A, HAR1B, BIRC7) 0.266099369666842 21 0.226326754936309 1.05702705133256 744 0.358572787487377 4 3 1 -6.77974029666656 LTS-025 chr20 61867331 61869223 1893 * BIRC7 0.455 1 NA 1.35913713356862 11 0.476009759258244 4 4 0 -5.76445574839041 LTS-025 chr20 61869224 61881296 12073 * c(MIR3196, NKAIN4, BIRC7) 0.432759935825998 10 0.151318501475824 1.24941095938714 91 0.558784043112907 4 2 2 -6.83960564700553 LTS-025 chr20 61881297 61916549 35253 * c(FLJ16779, NKAIN4, ARFGAP1) 0 1 NA 1.0875269412941 77 0.319977750422666 4 4 0 -5.76776789808911 LTS-025 chr20 61916550 62069988 153439 * c(MIR4326, CHRNA4, KCNQ2, ARFGAP1, COL20A1) 0 15 0 1.10952636047042 452 0.67409350181384 0 0 0 -Inf LTS-025 chr20 62069989 62126299 56311 * c(EEF1A2, KCNQ2) 0.457 1 NA 1.0442633994896 65 0.276940354762815 3 3 0 -5.76916888295746 LTS-025 chr20 62126300 62565672 439373 * c(MIR941-1, MIR941-3, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, ABHD16B, EEF1A2, GMEB2, STMN3, RTEL1, LIME1, SLC2A4RG, PTK6, SRMS, TPD52L2, FNDC11, PPDPF, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.314944552353503 38 0.216911090202026 1.04427138901596 1325 0.397075690017126 3 2 1 -6.75400409490075 LTS-025 chr20 62565673 62589178 23506 * c(UCKL1-AS1, MIR1914, UCKL1, ZNF512B, MIR647, DNAJC5) 0.424 1 NA 1.07332264797913 165 0.233545018062763 3 3 0 -5.76887283455404 LTS-025 chr20 62589179 62612675 23497 * c(SAMD10, PRPF6, ZNF512B) 0.460897730201265 11 0.0506124310996635 1.03717688986762 196 0.225153840946907 4 2 2 -8.2759942426347 LTS-025 chr20 62612676 62630424 17749 * PRPF6 0 1 NA 0.839232918785757 27 0.290585135197451 3 3 0 -5.76606597329093 LTS-025 chr20 62630425 62905721 275297 * c(RGS19, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, SOX18, PCMTD2, TCEA2) 0.214307868457312 17 0.222116672441468 1.05948538460629 546 0.465539268322776 4 3 1 -6.78088315628694 LTS-025 chr20 62905722 62959313 53592 * c(LINC00266-1, PCMTD2) NA 0 NA 1.10125879763521 51 0.63336160535452 4 NA NA -5.76546962136321 LTS-025 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.402 1 NA 0.547605085718031 17 0.501952328120791 2 2 0 -5.76978485222303 LTS-025 chr21 9907223 10910311 1003089 * c(TEKT4P2, TPTE) 0.369002069241035 19 0.15111174750468 1.13049816446854 72 1.13691947232048 4 2 2 -6.73670596454161 LTS-025 chr21 10910312 10910347 36 * TPTE 0.326 1 NA 1.471 1 NA NA NA NA NA LTS-025 chr21 10910348 11059877 149530 * c(BAGE, TPTE, BAGE3) 0.356145382900296 10 0.0870045337260587 0.817814624792148 82 0.638586378245872 2 1 1 -6.75701942799323 LTS-025 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.725665588172059 8 0.252867801429917 2 NA NA -5.7692327889342 LTS-025 chr21 14745307 14756794 11488 * character(0) 0.445 1 NA 1.02719376002385 9 0.648486507184228 3 3 0 -5.76453559879144 LTS-025 chr21 14756795 15599848 843054 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, RBM11, NA) 0.444303141842845 11 0.0448607947888901 1.04716604196005 163 0.447722733976878 4 2 2 -8.15887953946794 LTS-025 chr21 15599849 15646583 46735 * c(ABCC13, RBM11) 0 1 NA 1.2564486755709 22 0.315181418931743 4 4 0 -5.76449034207616 LTS-025 chr21 15646584 15858457 211874 * c(ABCC13, SAMSN1, HSPA13) 0.125441854297738 2 0.267286363288515 1.03815945562196 137 0.464546598739213 3 3 0 -6.80592156874986 LTS-025 chr21 15858458 15870730 12273 * SAMSN1 NA 0 NA 0.541 1 NA NA NA NA NA LTS-025 chr21 15870731 32639378 16768648 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, LINC01549, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, KRTAP13-1, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, NA NA NA NA NA NA NA NA NA LTS-025 KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, NRIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-025 CLDN8, ADAMTS1) 0.062287320381764 105 0.0576402176318297 0.736185201585268 3810 0.260239694608325 2 2 0 -8.57301207522747 LTS-025 NA NA NA NA LTS-025 chr21 32639379 32931554 292176 * TIAM1 NA 0 NA 0.398 1 NA NA NA NA NA LTS-025 chr21 32931555 34444730 1513176 * c(PAXBP1-AS1, LINC00159, OLIG2, OLIG1, TCP10L, HUNK, C21orf62-AS1, MIS18A, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, URB1-AS1, SYNJ1, PAXBP1, URB1) 0.034238581497084 34 0.0604578564490763 0.628622199214851 1449 0.311835891473838 2 2 0 -6.77967046228272 LTS-025 chr21 34444731 34537848 93118 * LINC01548 NA 0 NA 0.739 1 NA NA NA NA NA LTS-025 chr21 34537849 42622786 8084938 * c(LOC100133286, IL10RB-AS1, MIR3197, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, LINC00310, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, GART, LINC00323, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00114, PCP4, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, NA NA NA NA NA NA NA NA NA LTS-025 SMIM11A, SETD4, CLIC6, DNAJC28, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SON, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, PSMG1, CBR1, CBR3, CRYZL1, DOPEY2, KCNE2) 0.0694274811998056 137 0.0440161971534409 0.735904053237914 5890 0.654995380097688 2 2 0 -7.03361367655404 LTS-025 NA NA NA NA LTS-025 chr21 42622787 42688838 66052 * c(BACE2, FAM3B) 0 1 NA 0.822672189990548 45 0.104285098735063 3 3 0 -5.82964943610347 LTS-025 chr21 42688839 45950980 3262142 * c(LRRC3-AS1, WDR4, HSF2BP, LINC00313, TSPEAR-AS2, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, RRP1B, ICOSLG, C2CD2, LINC00319, AATBC, DNMT3L, AIRE, MX1, MX2, NDUFV3, ZBTB21, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, U2AF1, C21orf2, LRRC3, C21orf33, PDXK, RRP1, CBS, RSPH1, UMODL1, ABCG1 NA NA NA NA NA NA NA NA NA LTS-025 ) 0.0452493031506954 132 0.0721095947971484 0.76270447043281 4636 0.382555647842468 2 2 0 -7.07813786674497 LTS-025 NA NA NA NA LTS-025 chr21 45950981 45970303 19323 * c(KRTAP10-1, TSPEAR) 0.423 1 NA 0.791373171001897 33 0.366979898921073 3 3 0 -5.76699496498383 LTS-025 chr21 45970304 46086488 116185 * c(KRTAP12-2, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, TSPEAR) 0.193358477118925 9 0.1967412288035 0.747389362671352 243 0.344922731164186 4 3 1 -6.95393987877109 LTS-025 chr21 46086489 46086827 339 * c(KRTAP12-2, TSPEAR) 0.096 1 NA 0.850921971240557 9 0.239100106882266 3 3 0 -5.76444615654674 LTS-025 chr21 46086828 48063476 1976649 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, KRTAP12-2, KRTAP12-1, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-12, LSS, PCNT, PCBP3, C21orf58, YBEY, TSPEAR, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.0677755355608541 123 0.0758615406117997 0.748663634484243 2827 0.39650553999915 2 2 0 -6.92393247113935 LTS-025 chr21 48063477 48084993 21517 * PRMT2 NA 0 NA 0.713220695393822 77 0.20562924782192 2 NA NA -5.76732339770112 LTS-025 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.474 1 NA 1.17901096033577 5 0.164568222935049 4 4 0 -5.79956464028878 LTS-025 chr22 16887896 17590744 702849 * c(CECR7, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, HSFY1P1, TPTEP1) 0.22772332785084 13 0.22543422487189 1.0977898690084 389 0.488506692909699 4 3 1 -6.77311070675746 LTS-025 chr22 17590745 17591788 1044 * IL17RA 0 1 NA 0.944653818944486 15 0.329393092708104 3 3 0 -5.76441021482457 LTS-025 chr22 17591789 17598802 7014 * c(IL17RA, CECR6) 0.135889791255441 9 0.202828608545354 1.15570635557395 145 0.511414579782189 8 7 1 -6.74193236383273 LTS-025 chr22 17598803 17598813 11 * CECR6 0.477 1 NA 1.574 1 NA NA NA NA NA LTS-025 chr22 17598814 17671133 72320 * c(CECR5-AS1, CECR6, CECR5, CECR1) 0.359888875462256 10 0.200593258998291 0.99568529274016 226 0.456606795916022 4 2 2 -6.74378638940086 LTS-025 chr22 17671134 17690342 19209 * CECR1 0 1 NA 0.971087733636292 23 0.731126947012775 3 3 0 -5.76443129254822 LTS-025 chr22 17690343 18084033 393691 * c(CECR3, CECR2, CECR1, ATP6V1E1, SLC25A18) 0.184594194144226 9 0.227175592879165 1.10090687641977 271 0.607184603979794 5 4 1 -6.81327979949595 LTS-025 chr22 18084034 18111431 27398 * ATP6V1E1 0.405 1 NA 0.972833108749782 17 0.263878634647691 3 3 0 -5.76466911597241 LTS-025 chr22 18111432 18273463 162032 * c(MIR3198-1, BCL2L13, ATP6V1E1, MICAL3, BID) 0.4079714735751 9 0.156748825974693 1.05971623314931 285 0.370331647623491 4 2 2 -6.78763820475393 LTS-025 chr22 18273464 18293471 20008 * MICAL3 0 1 NA 1.21793011598937 21 0.431672809296247 4 4 0 -5.76442327022087 LTS-025 chr22 18293472 18900859 607388 * c(FLJ41941, USP18, GGT3P, TUBA8, PEX26, PRODH, MICAL3, MIR648, DGCR6) 0.161518683419113 13 0.235565794608945 1.06905867816078 527 0.459925447653841 4 3 1 -6.88038470586338 LTS-025 chr22 18900860 18908726 7867 * PRODH 0.47 1 NA 1.1580036530516 51 0.316408028950458 4 4 0 -5.76460768188951 LTS-025 chr22 18908727 19118870 210144 * c(TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, PRODH, DGCR14, DGCR2) 0.448617421574425 10 0.040774311084854 1.04080812922878 196 0.263703335963391 4 2 2 -8.50520295970787 LTS-025 chr22 19118871 19121483 2613 * c(TSSK2, DGCR14) 0 1 NA 1.13408123704981 53 0.682725462634479 4 4 0 -5.76443477653315 LTS-025 chr22 19121484 19430939 309456 * c(C22orf39, GSC2, MRPL40, SLC25A1, HIRA, CLTCL1, DGCR14) 0.140410467253726 11 0.23489870157155 1.04452966876307 529 0.337490329952972 3 3 0 -6.86811093183758 LTS-025 chr22 19430940 19431038 99 * c(C22orf39, HIRA) 0.448 1 NA 1.07099570853218 3 0.216880151235654 3 3 0 -5.76443101910271 LTS-025 chr22 19431039 19506456 75418 * c(C22orf39, HIRA, UFD1L, CDC45) 0.361614209146669 9 0.20489692530636 1.03951551103699 231 0.659581518709458 4 2 2 -6.73679059915327 LTS-025 chr22 19506457 19511873 5417 * c(CLDN5, CDC45) 0 1 NA 1.06852618916807 29 0.190642787468588 3 3 0 -5.76585065204143 LTS-025 chr22 19511874 19772928 261055 * c(SEPT5-GP1BB, LINC00895, TBX1, CLDN5) 0.208979197325121 15 0.235242691298845 1.04947297115244 251 0.460550610669498 4 3 1 -6.78529746641186 LTS-025 chr22 19772929 19773308 380 * character(0) 0.485 1 NA 1.31332968172486 9 0.731815208915475 4 4 0 -5.76441172153133 LTS-025 chr22 19773309 19905802 132494 * c(TXNRD2, GNB1L, C22orf29) 0.440774541811509 19 0.0410663419900585 1.05685962026035 345 0.221429543466808 4 2 2 -8.2212849310114 LTS-025 chr22 19905803 19907053 1251 * TXNRD2 0 1 NA 1.13361259973306 11 1.65350066662988 4 4 0 -5.76441216457272 LTS-025 chr22 19907054 19964890 57837 * c(MIR4761, TXNRD2, COMT, ARVCF) 0.305090002931011 14 0.20369952014056 1.1207361598352 180 0.548621263007062 3 2 1 -6.74561675518761 LTS-025 chr22 19964891 19969106 4216 * ARVCF 0.447 1 NA 1.17000962172957 37 0.41516300572344 4 4 0 -5.76445358873171 LTS-025 chr22 19969107 20104853 135747 * c(MIR1306, MIR3618, TANGO2, TRMT2A, MIR185, ARVCF, DGCR8) 0.388360303008593 17 0.15166737502528 1.07943344632795 332 0.313815565080681 4 2 2 -6.75842160788653 LTS-025 chr22 20104854 20109807 4954 * RANBP1 0 1 NA 0.871045734372279 17 0.351781370104986 3 3 0 -5.76455398061396 LTS-025 chr22 20109808 20230643 120836 * c(LINC00896, LOC284865, ZDHHC8, CCDC188, RANBP1, RTN4R) 0.0883046500283766 10 0.19970378063522 1.1803743601328 236 0.445300298517842 4 4 0 -6.78798616695473 LTS-025 chr22 20230644 20293304 62661 * c(MIR1286, RTN4R) 0.428 1 NA 0.936383904541231 39 0.331771147731289 3 3 0 -5.76441889594535 LTS-025 chr22 20293305 20796175 502871 * c(TMEM191B, PI4KAP1, NA, ZNF74, KLHL22, DGCR6L, RIMBP3, SCARF2) 0.18452414165568 10 0.246043830783596 0.991186081857222 324 0.295497828909562 3 2 1 -6.94545973879907 LTS-025 chr22 20796176 20937505 141330 * c(MED15, KLHL22) 0 1 NA 1.0714371231967 165 0.24255272542681 3 3 0 -5.78854659427481 LTS-025 chr22 20937506 21244401 306896 * c(POM121L4P, SERPIND1, MED15, PI4KA, TMEM191A, SNAP29) 0 9 0 1.03865053044009 437 0.557667914502583 0 0 0 -Inf LTS-025 chr22 21244402 21328568 84167 * c(CRKL, AIFM3, SNAP29) 0.434 1 NA 1.05389696170296 157 0.32289427546926 3 3 0 -5.77060600819837 LTS-025 chr22 21328569 22330361 1001793 * c(MIR301B, TUBA3FP, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L8P, YPEL1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MAPK1, TMEM191C, SLC7A4, UBE2L3, THAP7, LZTR1, TOP3B, P2RX6, PPM1F) 0.106868432646814 28 0.195978143015191 1.06139144038023 1368 0.433732681160098 3 3 0 -6.85747486735336 LTS-025 chr22 22330362 22453513 123152 * TOP3B 0.47 1 NA 0.974514994155588 23 0.347372765116473 3 3 0 -5.76515373797794 LTS-025 chr22 22453514 22786534 333021 * c(VPREB1, BMS1P20) 0.250740992154664 16 0.209116713822688 1.16543625703449 266 0.78132805750949 4 3 1 -6.73656460040341 LTS-025 chr22 22786535 22868017 81483 * ZNF280B 0.475 1 NA 0.944859271603324 61 0.278810058344171 3 3 0 -5.76441992635928 LTS-025 chr22 22868018 22899234 31217 * c(ZNF280A, PRAME) 0.466002580465489 13 0.0300651003060069 1.05272733547014 105 0.410507652750875 4 2 2 -10.1369484378842 LTS-025 chr22 22899235 22899556 322 * PRAME 0 1 NA 1.40578031650425 9 2.3324931642153 5 5 0 -5.76441038751042 LTS-025 chr22 22899557 24314258 1414702 * c(DDTL, IGLL5, ZDHHC8P1, C22orf15, DDT, PRAME, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, ZNF70, GGTLC2, GUSBP11, DERL3, RAB36) 0.273219903708846 35 0.217855078651193 1.04529894899553 1498 0.371800671995858 3 2 1 -6.84064034579428 LTS-025 chr22 24314259 24342396 28138 * c(DDTL, DDT, GSTTP1) NA 0 NA 0.77738689013669 21 0.4390406099017 2 NA NA -5.76736917439008 LTS-025 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 2.664 1 NA NA NA NA NA LTS-025 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 2.05292359416404 55 0.589681924761623 7 NA NA -5.76447593184846 LTS-025 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.901 1 NA NA NA NA NA LTS-025 chr22 24400149 24479292 79144 * c(CABIN1, GSTTP2) 0 1 NA 1.06598640126977 99 0.269902007382218 3 3 0 -5.77450770332155 LTS-025 chr22 24479293 25321374 842082 * c(SGSM1, ADORA2A, SPECC1L, CABIN1, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, TOP1P2, GUCD1) 0.0846027135256543 15 0.19520738666742 1.03631542209731 1089 0.351256459643441 3 3 0 -6.80856806329958 LTS-025 chr22 25321375 25425282 103908 * c(SGSM1, TMEM211, KIAA1671) 0.478 1 NA 1.02590318752467 93 0.230902048917898 3 3 0 -5.77309400802149 LTS-025 chr22 25425283 25961139 535857 * c(LOC100128531, CRYBB2, CRYBB2P1, CRYBB3, GRK3, KIAA1671, IGLL3P, LRP5L) 0.353903455331626 16 0.182509132191607 1.06562341900883 258 0.506655807010703 3 2 1 -6.76243614050895 LTS-025 chr22 25961140 26068423 107284 * GRK3 0 1 NA 1.18388411014608 29 0.442991262465401 4 4 0 -5.76500622594012 LTS-025 chr22 26068424 26692868 624445 * c(GRK3, SEZ6L, MYO18B) 0.14632127076727 10 0.24993565838698 1.04196277818697 382 0.529054459567619 3 3 0 -6.86262605614652 LTS-025 chr22 26692869 26702015 9147 * SEZ6L 0.484 1 NA 1.07329518998619 15 0.381985751417136 3 3 0 -5.76505940038819 LTS-025 chr22 26702016 27021425 319410 * c(MIR548J, CRYBA4, CRYBB1, SEZ6L, TFIP11, SRRD, ASPHD2, TPST2, HPS4) 0.419604744178002 9 0.157248564734662 0.967587761258256 565 0.282565352035757 3 2 1 -6.92299057539889 LTS-025 chr22 27021426 28195482 1174057 * c(CRYBA4, MN1, MIAT) 0 1 NA 1.07205814061912 141 0.241393441536884 3 3 0 -5.96278011283628 LTS-025 chr22 28195483 29183643 988161 * c(MIR3199-2, MIR3199-1, CHEK2, HSCB, CCDC117, TTC28, PITPNB, TTC28-AS1, MN1) 0.162971222501923 9 0.231753700677633 1.00972219914402 619 0.373013308189303 3 3 0 -6.93036062246944 LTS-025 chr22 29183644 29445702 262059 * c(ZNRF3-AS1, CCDC117, XBP1, ZNRF3) 0.493 1 NA 1.01904498000165 145 0.330433294431668 3 3 0 -5.77350497072227 LTS-025 chr22 29445703 29838203 392501 * c(MIR3653, RASL10A, GAS2L1, RFPL1S, EMID1, AP1B1, EWSR1, C22orf31, RHBDD3, RFPL1, KREMEN1, ZNRF3) 0.441383937957179 20 0.106347048557269 1.03440185255731 856 0.289885381172211 4 2 2 -7.09010331629136 LTS-025 chr22 29838204 29887349 49146 * c(NEFH, RFPL1) 0 1 NA 0.873300310036628 85 0.325836132794038 3 3 0 -5.76596412193838 LTS-025 chr22 29887350 30202297 314948 * c(CABP7, UQCR10, NF2, ZMAT5, ASCC2, NIPSNAP1, THOC5) 0 14 0 1.01834057709055 575 0.556548640991446 0 0 0 -Inf LTS-025 chr22 30202298 30366947 164650 * c(ASCC2, MTMR3) 0.462 1 NA 0.78582841060366 83 0.33612281166196 3 3 0 -5.79271783497902 LTS-025 chr22 30366948 30864897 497950 * c(SF3A1, HORMAD2, RNF215, SEC14L2, SEC14L3, LIF, OSM, MTFP1, CCDC157, GATSL3, TBC1D10A, KIAA1656, MTMR3) 0.383143755792746 35 0.179624107981271 1.01823646061123 1062 0.363501634876336 3 2 1 -6.79877629847705 LTS-025 chr22 30864898 30865993 1096 * SEC14L3 0 1 NA 1.20535902845472 5 3.34089401208718 4 4 0 -5.76441017043174 LTS-025 chr22 30865994 31335718 469725 * c(MIR3200, DUSP18, MORC2-AS1, MORC2, PES1, OSBP2, SEC14L3, SEC14L4, SLC35E4, SDC4P, TCN2, SEC14L6, GAL3ST1) 0.0546923375444841 13 0.175648541856772 1.07547560327144 765 0.467943079144353 3 3 0 -6.76303429209116 LTS-025 chr22 31335719 31479071 143353 * c(MORC2, TUG1, SMTN) 0.486 1 NA 0.995448745020384 69 0.284524310244669 3 3 0 -5.76775249103137 LTS-025 chr22 31479072 32302045 822974 * c(MIR3928, PIK3IP1, SELENOM, PATZ1, PISD, PRR14L, INPP5J, LIMK2, DRG1, PLA2G3, EIF4ENIF1, SMTN, RNF185, DEPDC5, SFI1) 0.360022264600718 63 0.18737323757338 1.03504410244641 1808 0.331894722072601 3 2 1 -6.78851151735966 LTS-025 chr22 32302046 32340379 38334 * c(C22orf24, DEPDC5) 0.482 1 NA 0.985014124526332 49 0.264992688578383 3 3 0 -5.76509009584623 LTS-025 chr22 32340380 32555287 214908 * c(C22orf42, AP1B1P1, C22orf24, SLC5A1, YWHAH) 0.195268187157467 9 0.238132899402367 1.05739109237922 239 0.755335180736974 5 4 1 -6.76839396654348 LTS-025 chr22 32555288 32579550 24263 * character(0) 0.486 1 NA 1.35850825238565 3 0.252462538475183 4 4 0 -5.76646872534397 LTS-025 chr22 32579551 32937740 358190 * c(RFPL3S, RFPL3, RFPL2, BPIFC, FBXO7, LOC339666, RTCB, SLC5A4, SYN3) 0.427834613467572 25 0.130970734644551 1.04711907952579 508 0.527809622088824 4 2 2 -6.87507880050286 LTS-025 chr22 32937741 33668857 731117 * c(TIMP3, SYN3) 0 1 NA 1.02622627338288 179 0.402015700175374 3 3 0 -5.78467534960532 LTS-025 chr22 33668858 35808722 2139865 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, MIR4764, HMOX1, MCM5, ISX, LARGE1) 0.15980168853674 11 0.242265706874235 1.09493558478404 565 0.418128757860246 4 3 1 -6.94726050595533 LTS-025 chr22 35808723 35817553 8831 * MCM5 0.414 1 NA 1.10784636678887 39 0.208469799299498 4 4 0 -5.76585853400944 LTS-025 chr22 35817554 37257177 1439624 * c(CACNG2, IFT27, RBFOX2, RASD2, APOL2, TXN2, MB, MCM5, MYH9, NCF4, PVALB, FOXRED2, APOL6, APOL5, APOL4, APOL3, APOL1, EIF3D) 0.437174176268424 47 0.0977354270007904 0.979661390887781 1327 0.265353959453723 3 2 1 -7.39753637669086 LTS-025 chr22 37257178 37319283 62106 * c(CSF2RB, NCF4) 0 1 NA 1.00778131739562 61 0.804271343508564 3 3 0 -5.76467976677047 LTS-025 chr22 37319284 37462273 142990 * c(LL22NC01-81G9.3, CSF2RB, TMPRSS6, TEX33, MPST, TST, KCTD17) 0.171989096240053 11 0.222060474973496 1.04246904630168 321 0.620542349839175 5 4 1 -6.78946892612106 LTS-025 chr22 37462274 37462926 653 * TMPRSS6 0.432 1 NA 1.08642887754652 5 0.438022602156555 4 4 0 -5.76444382104401 LTS-025 chr22 37462927 37577980 115054 * c(C1QTNF6, TMPRSS6, IL2RB) 0.272262205792643 15 0.220074814119026 1.00900565190663 270 0.584290042818983 4 3 1 -6.74214716558482 LTS-025 chr22 37577981 37578579 599 * C1QTNF6 0.474 1 NA 0.92111355065107 13 0.3357327424589 3 3 0 -5.76441160703507 LTS-025 chr22 37578580 37711339 132760 * c(C1QTNF6, CYTH4, RAC2, SSTR3) 0.439497250075193 19 0.111911619264113 1.05809214264557 295 0.253950177551478 4 2 2 -6.99532943923681 LTS-025 chr22 37711340 37764885 53546 * c(ELFN2, CYTH4) 0 1 NA 0.977795432578278 23 0.329683007410898 3 3 0 -5.7648416592531 LTS-025 chr22 37764886 37904695 139810 * c(ELFN2, CARD10, MFNG) 0.0225166487173874 9 0.119 1.08540943206054 307 0.612104754222676 4 4 0 -6.73806017788587 LTS-025 chr22 37904696 37904957 262 * CARD10 0.498 1 NA 1.18511357631368 3 0.508788102586266 4 4 0 -5.76441118123143 LTS-025 chr22 37904958 38097359 192402 * c(TRIOBP, CDC42EP1, SH3BP1, GGA1, CARD10, LGALS1, LGALS2, PDXP, NOL12) 0.422897411070818 10 0.150733760872164 1.00802887605774 442 0.280258158082896 4 2 2 -6.87062586400257 LTS-025 chr22 38097360 38109238 11879 * TRIOBP 0 1 NA 1.096172276519 13 0.563428618098431 4 4 0 -5.76473128874567 LTS-025 chr22 38109239 38386084 276846 * c(MIR4534, TRIOBP, ANKRD54, GCAT, H1F0, EIF3L, POLR2F, SOX10, MIR658, MIR659, C22orf23, GALR3, MICALL1) 0.112875419796592 9 0.210352085799024 1.02836142458214 867 0.653998707109918 3 3 0 -6.81624500192861 LTS-025 chr22 38386085 38463652 77568 * PICK1 0.427 1 NA 1.00242281642341 51 0.201621960366327 3 3 0 -5.76896289014631 LTS-025 chr22 38463653 38564041 100389 * c(SLC16A8, BAIAP2L2, PLA2G6, PICK1) 0.335294026759567 17 0.197025061857623 1.00536753636008 339 0.407167946975462 3 2 1 -6.73502064707944 LTS-025 chr22 38564042 38822425 258384 * c(CSNK1E, MAFF, TMEM184B, KCNJ4, LOC400927, PLA2G6) 0 1 NA 1.03106380521289 233 0.237126510889529 3 3 0 -5.78728310125872 LTS-025 chr22 38822426 39218323 395898 * c(DNAL4, DDX17, KDELR3, DMC1, NPTXR, CBY1, SUN2, KCNJ4, TOMM22, FAM227A, GTPBP1, JOSD1) 0.115469537737144 13 0.221815440724017 1.03371295897131 915 0.499030966950005 3 3 0 -6.81846194949416 LTS-025 chr22 39218324 39222652 4329 * NPTXR 0.442 1 NA 1.03064088675033 23 0.249682335728228 3 3 0 -5.76475388919014 LTS-025 chr22 39222653 39358478 135826 * c(APOBEC3A_B, APOBEC3A, CBX6, NPTXR) 0.483144763534896 2 0.0148492424049175 1.04728154734987 181 0.371232420550154 4 2 2 -14.429862915675 LTS-025 chr22 39358479 39358525 47 * c(APOBEC3A_B, APOBEC3A) NA 0 NA 0.486 1 NA NA NA NA NA LTS-025 chr22 39358526 39388303 29778 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) 0 1 NA 0.499476827811659 49 0.228766709735034 2 2 0 -5.78714011371642 LTS-025 chr22 39388304 39528506 140203 * c(APOBEC3A_B, APOBEC3D, APOBEC3H, APOBEC3F, CBX7, APOBEC3C, APOBEC3G, APOBEC3B) 0.426836638618556 21 0.143924798485347 0.965757816632915 293 0.345322458143373 4 2 2 -6.87277745614822 LTS-025 chr22 39528507 39528770 264 * CBX7 0 1 NA 1.41907066005785 5 1.13978704151258 5 5 0 -5.7644108198175 LTS-025 chr22 39528771 40043812 515042 * c(LOC100506472, TAB1, CBX7, SNORD43, MGAT3, ATF4, PDGFB, MIEF1, RPL3, CACNA1I, SYNGR1, RPS19BP1) 0.338873439232304 12 0.231226554913076 1.04616997828967 758 0.277669614916618 3 2 1 -6.7784158122173 LTS-025 chr22 40043813 40045959 2147 * CACNA1I 0 1 NA 1.16233919657835 15 0.933509496980283 4 4 0 -5.7644156322242 LTS-025 chr22 40045960 40368110 322151 * c(ENTHD1, CACNA1I, GRAP2) 0.0411408126418315 12 0.130481160836855 1.06121201734713 396 0.789776890446466 3 3 0 -6.73862773983794 LTS-025 chr22 40368111 40368608 498 * character(0) 0.434 1 NA 0.915184950488141 11 0.146316779625578 3 3 0 -5.76442102693187 LTS-025 chr22 40368609 41074803 706195 * c(LOC100130899, FAM83F, ADSL, TNRC6B, SGSM3, MKL1) 0.199850762470439 11 0.229926628613248 1.05157102045119 867 0.288278642683706 4 3 1 -6.90897737429972 LTS-025 chr22 41074804 41078473 3670 * MCHR1 0.46 1 NA 1.10790231558849 49 0.154775240267945 4 4 0 -5.7655010274269 LTS-025 chr22 41078474 41678351 599878 * c(MIR1281, MIR4766, SLC25A17, DNAJB7, CHADL, EP300, MCHR1, RANGAP1, XPNPEP3, ST13, L3MBTL2, RBX1) 0.357212616163144 19 0.173617547015211 0.999213658743797 1004 0.543375397623896 3 2 1 -6.75193268634948 LTS-025 chr22 41678352 41734147 55796 * c(ZC3H7B, RANGAP1) 0 1 NA 1.0478247583622 34 0.274185353079148 3 3 0 -5.76954045879225 LTS-025 chr22 41734148 42209814 475667 * c(TOB2, MEI1, POLR3H, ZC3H7B, XRCC6, CSDC2, DESI1, SNU13, ACO2, PMM1, TEF, C22orf46, CCDC134, PHF5A) 0.0897011206505067 9 0.199616576911282 1.01864344472543 1179 0.303197135244208 3 3 0 -6.79637184591495 LTS-025 chr22 42209815 42270017 60203 * c(SREBF2, CCDC134) 0.454 1 NA 1.02543855439711 47 0.194816714545801 3 3 0 -5.771405820963 LTS-025 chr22 42270018 42486932 216915 * c(TNFRSF13C, FAM109B, WBP2NL, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SEPT3, SREBF2, CENPM, SMDT1) 0.35320643087866 11 0.184326390356395 0.996447518863789 610 0.353315009800938 3 2 1 -6.74579523455197 LTS-025 chr22 42486933 42522640 35708 * c(NDUFA6-AS1, CYP2D6) 0 1 NA 1.45567069752007 5 0.667793980206471 5 5 0 -5.76452851514215 LTS-025 chr22 42522641 42805415 282775 * c(NDUFA6-AS1, NFAM1, CYP2D7, CYP2D6, OGFRP1, TCF20) 0.152308584287027 16 0.232980542821355 1.19454109972223 393 0.622294635662771 5 4 1 -6.804707343192 LTS-025 chr22 42805416 42905055 99640 * c(NFAM1, RRP7A, SERHL) 0.417 1 NA 0.961681357024468 33 0.291487567305948 3 3 0 -5.76473818478223 LTS-025 chr22 42905056 43579006 673951 * c(PACSIN2, CYB5R3, TTLL12, SERHL2, TTLL1, ARFGAP3, RNU12, ATP5L2, RRP7A, MCAT, A4GALT, BIK, TSPO, POLDIP3, RRP7BP, SERHL) 0.346912288211174 34 0.190951487525589 1.01571638566217 840 0.431605124881854 3 2 1 -6.75024315955288 LTS-025 chr22 43579007 43599446 20440 * c(TTLL12, SCUBE1) 0 1 NA 1.17688938707395 21 0.549698878607968 4 4 0 -5.76450582451837 LTS-025 chr22 43599447 44151542 552096 * c(EFCAB6-AS1, EFCAB6, MPPED1, SCUBE1) 0.0489980817493313 13 0.175120690982695 1.1020201493925 347 0.804962065154662 4 4 0 -6.74830352033885 LTS-025 chr22 44151543 44151656 114 * EFCAB6 0.464 1 NA 0.994772521278407 3 0.0160416125540213 3 3 0 -5.76521935837717 LTS-025 chr22 44151657 45258457 1106801 * c(PNPLA5, ARHGAP8, SAMM50, SULT4A1, PARVB, LINC00207, LINC00229, PRR5-ARHGAP8, PRR5, PARVG, EFCAB6, PNPLA3, LDOC1L, KIAA1644) 0.395949864510842 38 0.158845248416575 1.06214465912368 838 0.364284162564572 4 2 2 -6.86319629748844 LTS-025 chr22 45258458 45277303 18846 * c(PHF21B, ARHGAP8, PRR5-ARHGAP8) 0 1 NA 1.09242607114449 11 0.759724268163367 4 4 0 -5.76470664869476 LTS-025 chr22 45277304 45592668 315365 * c(NUP50-AS1, NUP50, PHF21B, KIAA0930) 0.218734639059285 15 0.243271707786836 1.02227584376831 326 0.545392434740011 4 3 1 -6.77648970933479 LTS-025 chr22 45592669 45683246 90578 * c(MIR1249, KIAA0930, UPK3A) 0.409 1 NA 1.03198011524296 89 0.246308013237667 3 3 0 -5.77200640644907 LTS-025 chr22 45683247 45996782 313536 * c(FBLN1, RIBC2, SMC1B, FAM118A, UPK3A) 0.289718834407405 14 0.209143163018452 1.02948493191687 442 0.384387406607608 3 2 1 -6.76560942256756 LTS-025 chr22 45996783 46114398 117616 * c(FBLN1, ATXN10) 0.458 1 NA 1.00889796917994 39 0.204559218037737 3 3 0 -5.77255064827888 LTS-025 chr22 46114399 46318292 203894 * c(MIR4762, ATXN10, WNT7B) 0.0901094707756618 9 0.204531171218472 1.11962853344977 109 1.05271531478312 3 3 0 -6.77887500330519 LTS-025 chr22 46318293 46499120 180828 * c(LINC00899, MIR3619, PRR34-AS1, MIRLET7BHG, PRR34, LOC730668, WNT7B) 0.465 1 NA 1.03624152729356 157 0.203497107092787 3 3 0 -5.7885917934399 LTS-025 chr22 46499121 46509183 10063 * c(MIRLET7BHG, MIRLET7A3) 0.466091987421971 11 0.0342490875790874 1.01475001314168 99 0.294961970792108 4 2 2 -9.63290572480378 LTS-025 chr22 46509184 46632874 123691 * c(MIR4763, MIRLET7BHG, MIRLET7B, PPARA) 0 1 NA 1.03376106859178 85 0.410623808083148 3 3 0 -5.76828591225045 LTS-025 chr22 46632875 46844439 211565 * c(PKDREJ, CDPF1, GTSE1-AS1, GTSE1, PPARA, TTC38, TRMU, CELSR1) 0.104960815763479 12 0.194069555634681 1.04293120668791 808 0.431430410222577 3 3 0 -6.81617466606052 LTS-025 chr22 46844440 47057191 212752 * c(GRAMD4, CELSR1) 0.445 1 NA 1.05640330463611 109 0.262579212196129 3 3 0 -5.78902215219362 LTS-025 chr22 47057192 47091143 33952 * c(GRAMD4, CERK) 0.389232441389456 18 0.180794506539251 1.06220537387226 206 0.345276971978498 4 2 2 -6.74487132241077 LTS-025 chr22 47091144 47311554 220411 * c(TBC1D22A, CERK) 0 1 NA 0.989705063152759 111 0.355365647131716 3 3 0 -5.76706025162908 LTS-025 chr22 47311555 50018069 2706515 * c(LINC01310, MIR3201, MIR4535, TBC1D22A, FAM19A5, LOC284933, C22orf34, LINC00898) 0.290283536436727 13 0.237657801826977 1.13567200739464 323 0.612716111841033 4 3 1 -6.77086059236165 LTS-025 chr22 50018070 50020722 2653 * C22orf34 NA 0 NA 0.942074804068142 15 0.108411825044705 3 NA NA -5.76441026853863 LTS-025 chr22 50020723 50050993 30271 * C22orf34 NA 0 NA 0.679 1 NA NA NA NA NA LTS-025 chr22 50050994 50169846 118853 * c(BRD1, C22orf34) 0 1 NA 0.526886650321953 37 0.248931063096139 2 2 0 -5.8124327205172 LTS-025 chr22 50169847 51214211 1044365 * c(CHKB-AS1, RABL2B, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, BRD1, RPL23AP82, NCAPH2, CHKB-CPT1B, IL17REL, ARSA, DENND6B, PIM3, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, PPP6R2, ZBED4, SCO2) 0.0546405848903024 100 0.0628327417382326 0.593648080856038 3136 0.279062057419881 2 2 0 -6.7953761346109 LTS-025 chr22 51214212 51220846 6635 * c(RABL2B, RPL23AP82) NA 0 NA 0.497306183232175 21 0.242143886779662 2 NA NA -5.76909773155409 LTS-025 chrX 2699993 2715425 15433 * XG 0.389 1 NA 0.9461022931143 15 0.221859629581624 3 3 0 -5.76441534018155 LTS-025 chrX 2715426 3228627 513202 * c(LINC01546, MXRA5, ARSH, ARSD, ARSE, ARSF, XG, GYG2) 0.206308767028899 18 0.244332597703732 1.06594405472728 530 0.486547274107202 4 3 1 -6.79452088386777 LTS-025 chrX 3228628 3228891 264 * MXRA5 0.475 1 NA 0.870237501713847 7 0.183374324421776 3 3 0 -5.76443892310228 LTS-025 chrX 3228892 3736489 507598 * c(MXRA5, LOC389906, PRKX) 0.469755708057065 9 0.0231072379233098 1.03822915639105 196 0.341979116416321 4 2 2 -11.545707820805 LTS-025 chrX 3736490 5809902 2073413 * c(LOC389906, NLGN4X) 0 1 NA 1.24214045024264 45 0.727392341994277 4 4 0 -5.76447879215622 LTS-025 chrX 5809903 10107417 4297515 * c(CLDN34, MIR4770, MIR4767, FAM9A, FAM9B, VCX, SHROOM2, ANOS1, STS, VCX3B, GPR143, VCX2, VCX3A, WWC3, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4) 0.154964877739829 22 0.21618444505957 1.04272170607851 1178 0.393487003467064 3 3 0 -7.08101735780175 LTS-025 chrX 10107418 10112338 4921 * WWC3 0.473 1 NA 1.06915870921749 61 0.297455774368087 3 3 0 -5.76495276688162 LTS-025 chrX 10112339 11683075 1570737 * c(CLCN4, AMELX, HCCS, ARHGAP6, MID1, WWC3) 0.38289338209333 9 0.152045040841339 1.0897244797037 589 0.323732027272415 4 2 2 -6.87687390324385 LTS-025 chrX 11683076 11785340 102265 * c(MSL3, ARHGAP6) NA 0 NA 1.11711555712208 94 0.244660368807401 4 NA NA -5.77478308269102 LTS-025 chrX 11785341 12627783 842443 * c(MSL3, FRMPD4) 0 1 NA 1.0245545851092 69 0.487402101565433 3 3 0 -5.77971603712499 LTS-025 chrX 12627784 12740371 112588 * FRMPD4 0.145530221000664 9 0.21880667519779 0.98385222785326 163 1.66808642332639 7 6 1 -6.74930572849879 LTS-025 chrX 12740372 12838934 98563 * c(PRPS2, FRMPD4) 0.486 1 NA 0.987876914764655 89 0.289096407164361 3 3 0 -5.76607187489275 LTS-025 chrX 12838935 14627144 1788210 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, GLRA2, GPM6B, TLR8-AS1, TLR7, TLR8, GEMIN8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A) 0.396457720636495 22 0.13398604308009 0.982218587851453 1001 0.284371337554223 3 2 1 -6.9005821897246 LTS-025 chrX 14627145 14862969 235825 * c(FANCB, GLRA2) 0 1 NA 1.10196491634134 61 0.553857830291189 4 4 0 -5.77043411172439 LTS-025 chrX 14862970 15801158 938189 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, FANCB, VEGFD, CA5BP1, PIGA, TMEM27, ACE2, BMX, PIR) 0.165831703917558 19 0.218689838844961 1.04781924533306 817 0.369683236366539 4 3 1 -6.96135250252281 LTS-025 chrX 15801159 15817963 16805 * c(CA5B, ZRSR2, INE2) 0.379 1 NA 0.917092753277749 81 0.189143757790499 3 3 0 -5.76459891158797 LTS-025 chrX 15817964 17086699 1268736 * c(GRPR, TXLNG, CTPS2, RBBP7, MAGEB17, S100G, ZRSR2, AP1S2, REPS2, SYAP1) 0.398995125002494 15 0.196624612129911 0.99617019838521 772 0.243719011293603 3 2 1 -6.8467889027131 LTS-025 chrX 17086700 17092171 5472 * REPS2 NA 0 NA 1.26 1 NA NA NA NA NA LTS-025 chrX 17092172 17166795 74624 * REPS2 0.418 1 NA 1.10194807702723 67 0.370922480658184 4 4 0 -5.76866261821488 LTS-025 chrX 17166796 17167962 1167 * REPS2 0 1 NA 1.3476239403372 15 0.620572301148207 4 4 0 -5.76442385643568 LTS-025 chrX 17167963 21874300 4706338 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, ADGRG2, SCML2, RAI2, BEND2, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHKA2, PPEF1, RPS6KA3, RS1, SCML1, CDKL5, LOC729609, REPS2) 0.00842140197941738 32 0.0864438040000554 1.12643706585411 2644 0.452217460416678 4 4 0 -6.87925801222252 LTS-025 chrX 21874301 22291606 417306 * c(PTCHD1-AS, PHEX-AS1, ZNF645, YY2, MBTPS2, PHEX, SMS) 0.416 1 NA 1.0649847112013 483 0.286752103038547 3 3 0 -5.81059085761944 LTS-025 chrX 22291607 23416939 1125333 * c(PTCHD1-AS, PTCHD1, ZNF645, DDX53) 0.462 1 NA 1.15460740861395 269 0.275078192693742 4 4 0 -5.80499791772697 LTS-025 chrX 23416940 24517039 1100100 * c(SUPT20HL1, ZFX-AS1, PRDX4, SUPT20HL2, EIF2S3, ACOT9, CXorf58, PDK3, SAT1, ZFX, APOO, KLHL15) 0.392265438501509 22 0.135272668359853 1.00367645440645 914 0.297983959124728 3 2 1 -6.88752978408455 LTS-025 chrX 24517040 24557925 40886 * PDK3 0 1 NA 1.00391877490324 63 0.391296880703036 3 3 0 -5.76507816876393 LTS-025 chrX 24557926 27766623 3208698 * c(PPP4R3CP, VENTXP1, MAGEB6, ARX, MAGEB18, DCAF8L2, MAGEB5, PDK3, POLA1, SCARNA23, PCYT1B) 0.113177646218064 13 0.217304465598917 1.08174149132649 605 0.471828910555826 3 3 0 -6.97193158416926 LTS-025 chrX 27766624 27766776 153 * DCAF8L2 0.5 1 NA 1.25702592934018 5 0.537204802659098 4 4 0 -5.76441022941113 LTS-025 chrX 27766777 30238090 2471314 * c(IL1RAPL1, MAGEB10, DCAF8L1, DCAF8L2, MAGEB2) 0.325447860562036 11 0.215927470987998 1.05744782415732 215 0.416614531288743 3 2 1 -6.84712295560321 LTS-025 chrX 30238091 30268859 30769 * c(MAGEB1, MAGEB2, MAGEB3, MAGEB4) 0 1 NA 0.98410350515021 89 0.504368765015832 3 3 0 -5.76455474807194 LTS-025 chrX 30268860 32381004 2112145 * c(DMD, NR0B1, TAB3, GK, MAGEB1, FTHL17, CXorf21) 0.192592447745455 13 0.240803728994042 1.05475608954542 729 0.363571737146639 4 3 1 -7.01598543027316 LTS-025 chrX 32381005 32503194 122190 * DMD 0.408 1 NA 1.08303653154817 77 0.119847984141589 4 4 0 -5.85161206942729 LTS-025 chrX 32503195 35821558 3318364 * c(MAGEB16, FAM47A, FAM47B, DMD, TMEM47) 0.462242774247241 9 0.0356841857285705 1.09125896432004 357 0.272454680694696 4 2 2 -9.72475963998375 LTS-025 chrX 35821559 35988934 167376 * c(MAGEB16, NA) 0 1 NA 1.13695528707196 65 0.277062048729439 4 4 0 -5.77342608020374 LTS-025 chrX 35988935 38019350 2030416 * c(CYBB, NA, HYPM, CFAP47, LANCL3, FTH1P18, FAM47C, PRRG1, NA, DYNLT3, XK, SRPX, SYTL5) 0.0350363119145002 13 0.134792147682731 1.09709197940919 937 0.375291904662644 4 4 0 -6.85425540238568 LTS-025 chrX 38019351 38144065 124715 * c(RPGR, SRPX) 0.45 1 NA 0.992363508495862 81 0.224865818014013 3 3 0 -5.76856405655457 LTS-025 chrX 38144066 40514322 2370257 * c(ATP6AP2, CXorf38, LINC01281, MPC1L, OTC, BCOR, MID1IP1, RPGR, TSPAN7, MED14) 0.255107462377108 11 0.226400971729363 1.04709853820889 705 0.317009426667007 3 2 1 -6.95514847487111 LTS-025 chrX 40514323 41000025 485703 * c(LOC100132831, USP9X, MED14) 0 1 NA 0.967888016272988 185 0.221950145522665 3 3 0 -5.76905316498166 LTS-025 chrX 41000026 45008811 4008786 * c(FUNDC1, DDX3X, GPR82, GPR34, MAOA, MAOB, NDP, NYX, DUSP21, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, CASK) 0 9 0 1.03707402775955 1416 0.34475899097908 0 0 0 -Inf LTS-025 chrX 45008812 46321971 1313160 * c(LOC392452, MIR221, MIR222, KRBOX4, CXorf36) 0.471 1 NA 0.968032782222718 129 0.279275680800581 3 3 0 -5.77241903036248 LTS-025 chrX 46321972 46541833 219862 * c(ZNF674-AS1, KRBOX4, CHST7, ZNF674, SLC9A7) 0.174926827862517 9 0.231864064581911 1.01012364503447 291 0.401180493734611 4 3 1 -6.85339927961419 LTS-025 chrX 46541834 47104435 562602 * c(CDK16, NDUFB11, RP2, LINC01545, UBA1, USP11, RBM10, SLC9A7, INE1, RGN, JADE3) 0.169564947153823 11 0.234887129567296 1.12754365497874 773 0.374583515511878 4 3 1 -6.8485605948608 LTS-025 chrX 47104436 47229935 125500 * USP11 0.478 1 NA 1.00689548739211 31 0.346758618905062 3 3 0 -5.76726517465142 LTS-025 chrX 47229936 47483800 253865 * c(SNORA11C, MIR4769, ARAF, CFP, SYN1, TIMP1, ZNF41, ZNF157) 0.378547522040175 10 0.196821859671238 1.08918565910148 444 0.384599600022757 4 2 2 -6.75092372803793 LTS-025 chrX 47483801 47485354 1554 * CFP 0 1 NA 2.13352760617216 3 3.41380467123316 7 7 0 -5.76441013871595 LTS-025 chrX 47485355 47917687 432333 * c(UXT-AS1, ELK1, ZNF81, SPACA5, CXXC1P1, CFP, ZNF630, ZNF182, UXT) 0.150522746843775 23 0.211582228756793 1.10567791793591 535 0.515929584234661 5 4 1 -6.89153861229315 LTS-025 chrX 47917688 47927449 9762 * c(SPACA5, ZNF630) 0.457 1 NA 0.995603509094978 53 0.299127231911151 3 3 0 -5.76461729212548 LTS-025 chrX 47927450 48433529 506080 * c(SSX3, EBP, FTSJ1, SSX6, SSX9, SPACA5, TBC1D25, ZNF630, RBM3, PORCN, SSX1, SSX5, SLC38A5) 0.44705494507915 10 0.030027579915064 1.04132252885518 402 0.297915343883026 4 2 2 -9.42221964502565 LTS-025 chrX 48433530 48546422 112893 * c(RBM3, WDR13, WAS) 0 1 NA 1.07898952651583 161 0.278880995596632 4 4 0 -5.78033616498184 LTS-025 chrX 48546423 50339086 1792664 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, PQBP1, TIMM17B, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, CCDC22, ERAS, KCND1, USP27X, GLOD5, PRICKLE3, MIR188, FOXP3, PLP2, OTUD5, GRIPAP1, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, SUV39H1, SYP, MIR532, TFE3, MIR660, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, CACNA1F, MAGIX, CCNB3, NA NA NA NA NA NA NA NA NA LTS-025 PAGE1, AKAP4, PPP1R3F, CCDC120, PAGE4) 0.0410124608639081 59 0.146390770692723 1.11577482230236 2812 0.532513864092173 4 4 0 -6.77687389166617 LTS-025 NA NA NA NA LTS-025 chrX 50339087 50653775 314689 * c(SHROOM4, BMP15) 0.478 1 NA 1.1831620181335 125 0.259608340240795 4 4 0 -5.769643993433 LTS-025 chrX 50653776 53222840 2569065 * c(XAGE3, XAGE5, NUDT10, GSPT2, SSX7, SSX8, SPANXN5, GPR173, NUDT11, TSPYL2, XAGE1B, FAM156B, MAGED4B, KDM5C, BMP15, MAGED1) 0.290373772554642 9 0.16033168744824 1.10489628968597 531 0.322229497595367 4 3 1 -6.9288602208494 LTS-025 chrX 53222841 53225192 2352 * KDM5C 0 1 NA 1.10774057525078 37 0.422773883721259 4 4 0 -5.76450408726019 LTS-025 chrX 53225193 54337623 1112431 * c(HUWE1, RIBC1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, FAM120C, WNK3, KDM5C, SMC1A) 0.0209664442487933 30 0.116341866432757 1.05025762993979 1836 0.362869905776058 3 3 0 -6.80272863935138 LTS-025 chrX 54337624 54472506 134883 * c(FGD1, WNK3, TSR2) 0.483 1 NA 1.11119926936993 75 0.229353990532044 4 4 0 -5.78164446213865 LTS-025 chrX 54472507 54841737 369231 * c(MAGED2, FGD1, ITIH6, GNL3L, SNORA11) 0.231575089841824 13 0.243206175064992 1.07631501073002 416 0.487950159238456 4 3 1 -6.76133315815413 LTS-025 chrX 54841738 54841870 133 * MAGED2 0 1 NA 1.27448935770936 5 1.17987846831782 4 4 0 -5.76441018972499 LTS-025 chrX 54841871 55172471 330601 * c(MAGED2, PAGE2, ALAS2, APEX2, PAGE2B, PFKFB1, TRO, FAM104B) 0.0353173690116707 9 0.0696666666666667 1.09103370489944 425 0.527063012868339 3 3 0 -6.74858853245548 LTS-025 chrX 55172472 55172572 101 * FAM104B 0.244 1 NA 1.20313139559666 3 1.19167151514165 4 4 0 -5.76441016433269 LTS-025 chrX 55172573 57622479 2449907 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, FAM104B, PAGE5) 0.228299093928164 14 0.199925535588178 1.08973086806276 712 0.388309447650955 4 3 1 -6.90187819923145 LTS-025 chrX 57622480 57937169 314690 * c(ZXDB, ZXDA) NA 0 NA 1.06935265794202 127 0.292592815069973 3 NA NA -5.80017216399728 LTS-025 chrX 61999880 62893950 894071 * c(SPIN4, ARHGEF9, LINC01278) 0 1 NA 1.11457351569911 183 0.297340553258014 4 4 0 -5.82805168280353 LTS-025 chrX 62893951 69653186 6759236 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, ASB12, AWAT1, AWAT2, EDA, EFNB1, ARHGEF9, KIF4A, FAM155B, YIPF6, ZC3H12B, DGAT2L6, RAB41, IGBP1, AR, ARR3, MIR223, MSN, OPHN1, P2RY4, PDZD11, GDPD2, MTMR8, ZC4H2, EDA2R, PJA1, LAS1L, FRMD8P1, STARD8, HEPH) 0.0251375336572499 41 0.117773832449131 1.08390809172848 2803 0.489850007637706 4 4 0 -7.009685641066 LTS-025 chrX 69653187 69668463 15277 * c(DLG3, GDPD2) 0.435 1 NA 1.0380324424259 21 0.237957539229566 3 3 0 -5.76596406485404 LTS-025 chrX 69668464 70361967 693504 * c(CXorf65, DLG3, SNX12, IL2RG, FOXO4, TEX11, SLC7A3, MED12) 0.21790318381966 15 0.227645338190792 1.05204263159877 824 0.411478477109582 4 3 1 -6.82036335846198 LTS-025 chrX 70361968 70362303 336 * MED12 0 1 NA 1.2271505385627 9 0.217617784199729 4 4 0 -5.76441032731423 LTS-025 chrX 70362304 71424663 1062360 * c(ITGB1BP2, GJB1, INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, NONO, PIN4, NLGN3, ERCC6L, BCYRN1, TAF1, OGT, ZMYM3, ACRC, MED12) 0.0725702545771099 14 0.165999735204343 1.05572393525952 1242 0.452633452441993 3 3 0 -6.80364182689095 LTS-025 chrX 71424664 71424718 55 * c(PIN4, ERCC6L) 0.417 1 NA 1.03191865964214 3 0.206032359917886 3 3 0 -5.76441660682965 LTS-025 chrX 71424719 74290245 2865527 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, ABCB7, PABPC1L2A, KIAA2022, ZCCHC13, MIR374A, CITED1, NAP1L2, RLIM, PHKA1, PIN4, CHIC1, ERCC6L, JPX, HDAC8, RPS4X, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, MIR421, XIST, TSIX) 0.220086339543328 21 0.242447500453584 1.08447581263633 1869 0.391752606080076 4 3 1 -6.93718988234738 LTS-025 chrX 74290246 74637018 346773 * c(UPRT, ZDHHC15, ABCB7) 0 1 NA 1.11498266477195 129 0.385571869808718 4 4 0 -5.77910479857526 LTS-025 chrX 74637019 78217413 3580395 * c(MIR4328, CYSLTR1, COX7B, MAGEE2, ZDHHC15, ZCCHC5, P2RY10, LPAR4, TTC3P1, PGAM4, MIR384, PBDC1, TAF9B, PGK1, ATP7A, ATRX, MAGEE1, MAGT1, FGF16) 0 12 0 1.07478529663514 1349 0.381225230290855 0 0 0 -Inf LTS-025 chrX 78217414 78426471 209058 * c(P2RY10, GPR174) 0.449 1 NA 1.07687032605828 5 0.392499936305727 3 3 0 -5.77915223817292 LTS-025 chrX 78426472 84358864 5932393 * c(UBE2DNL, APOOL, HDX, CYLC1, FAM46D, BRWD3, RPS6KA6, SATL1, TBX22, POU3F4, SH3BGRL, HMGN5, GPR174, ITM2A) 0.240772521224471 15 0.233766122438646 1.09273437681363 1042 0.303760383183318 4 3 1 -7.27025235588138 LTS-025 chrX 84358865 84533838 174974 * c(SATL1, ZNF711, POF1B) 0 1 NA 1.08822607820676 173 0.284892012638893 4 4 0 -5.78516252821152 LTS-025 chrX 84533839 86923802 2389964 * c(CHM, DACH2, KLHL4, POF1B) 0.0695654493280932 10 0.188338967467348 1.10111028543537 606 0.475579139474818 4 4 0 -6.84495278505579 LTS-025 chrX 86923803 86924824 1022 * KLHL4 0 1 NA 1.34163967843219 17 0.363797000197832 4 4 0 -5.76444160817813 LTS-025 chrX 86924825 92927634 6002810 * c(PABPC5, PCDH11X, NAP1L3, CPXCR1, KLHL4, TGIF2LX) 0.403589638293395 9 0.158330701732517 1.13999173764661 465 0.384549262644521 4 2 2 -6.91598531981671 LTS-025 chrX 92927635 95227914 2300280 * c(FAM133A, NAP1L3) 0 1 NA 1.25306110841309 99 0.813812771949473 4 4 0 -5.7648277768309 LTS-025 chrX 95227915 100183908 4955994 * c(CSTF2, DIAPH2, NOX1, SRPX2, RPA4, XKRX, XRCC6P5, PCDH19, TNMD, BRDTP1, TSPAN6, SYTL4) 0.0876737253609387 12 0.189233381640959 1.11171336577597 1038 0.380740355642528 4 4 0 -7.01224639753107 LTS-025 chrX 100183909 100212432 28524 * character(0) 0.436 1 NA 1.18954553082336 13 0.384193644416792 4 4 0 -5.76457632944676 LTS-025 chrX 100212433 101439808 1227376 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, TIMM8A, DRP2, CENPI, GLA, HNRNPH2, BEX5, ARL13A, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, TMEM35A, RPL36A, BTK, TRMT2B, ZMAT1, ARMCX2) 0.325195368618285 15 0.228491262727609 1.06154452763406 1412 0.296905175971404 3 2 1 -6.8520134194285 LTS-025 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.09 1 NA NA NA NA NA LTS-025 chrX 101472923 101624980 152058 * character(0) NA 0 NA 0.248071650778634 40 0.50102162231349 1 NA NA -5.80895657627844 LTS-025 chrX 101624981 102978965 1353985 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, GPRASP2, RAB40A, TMEM31, BEX3, RAB40AL, TCEAL5, MORF4L2-AS1, GLRA4, TCEAL9, BEX1, NXF4, NXF3, BEX4, TCEAL7, ARMCX5, TCEAL4, BHLHB9, BEX2, TCEAL3, TCEAL8, TCEAL1, MORF4L2, GPRASP1) 0.278410996815284 8 0.239151438871452 1.09407746511728 894 0.319511999304302 4 3 1 -6.85047056914515 LTS-025 chrX 102978966 102983425 4460 * GLRA4 0 1 NA 1.14937338378138 27 0.624903605102031 4 4 0 -5.76444586353935 LTS-025 chrX 102983426 108867574 5884149 * c(MID2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, H2BFWT, TSC22D3, NRK, KCNE5, IL1RAPL2, H2BFM, LOC286437, TMSB15B, GUCY2F, VSIG1, SLC25A53, GLRA4, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, NXT2, TEX13B, TEX13A, PRPS1, PSMD10, ZCCHC18, SERPINA7, RNF128, MORC4, ESX1, IRS4, CLDN2, RIPPLY1) 0.0648417208848126 44 0.162832504183301 1.09809212702004 3397 0.4550191259949 4 4 0 -6.99154302086696 LTS-025 chrX 108867575 108868153 579 * KCNE5 0.457 1 NA 1.06019965014313 13 0.199179084475021 3 3 0 -5.76453417663651 LTS-025 chrX 108868154 109931896 1063743 * c(MIR3978, ACSL4, KCNE5, RGAG1, SNORD96B, TDGF1P3, TMEM164, CHRDL1, AMMECR1) 0.169919049057838 10 0.21550377671349 1.06522404681361 627 0.420506582544048 4 3 1 -6.92361642324265 LTS-025 chrX 109931897 110460670 528774 * c(PAK3, CHRDL1) 0 1 NA 1.06604711884554 123 0.47453665076595 3 3 0 -5.78621208837848 LTS-025 chrX 110460671 114384608 3923938 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, AMOT, DCX, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, MIR448, LRCH2, SNORA35, TRPC5, ALG13, CAPN6) 0.0590302870158453 22 0.166937094459241 1.11905221147062 1194 0.503195834815887 4 4 0 -6.84335850097799 LTS-025 chrX 114384609 114426193 41585 * c(RBMXL3, LRCH2) 0.47 1 NA 1.08866669996563 92 0.321090361217663 4 4 0 -5.76827893844461 LTS-025 chrX 114426194 117054395 2628202 * c(SLC6A14, RBMXL3, AGTR2, CT83, LUZP4, PLS3, LRCH2, KLHL13) 0.360467867641742 12 0.175762473155384 1.12116559211916 489 0.343305521924551 4 2 2 -6.85773487616727 LTS-025 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.976 1 NA NA NA NA NA LTS-025 chrX 117079357 117742356 663000 * c(MIR1277, DOCK11, WDR44, KLHL13) 0.252739199838207 8 0.223640935110598 0.999967168539411 364 0.306852496385293 3 2 1 -6.81957318694019 LTS-025 chrX 117742357 117900811 158455 * c(DOCK11, IL13RA1) 0 1 NA 1.01369384587962 190 0.219595839234948 3 3 0 -5.77526439425513 LTS-025 chrX 117900812 118284297 383486 * c(ZCCHC12, IL13RA1, KIAA1210, LONRF3) 0.0818445043294106 10 0.193895848331005 1.07181923308411 416 0.619028907459409 3 3 0 -6.77729162052312 LTS-025 chrX 118284298 118514072 229775 * c(PGRMC1, KIAA1210) 0.393 1 NA 1.06395639386858 55 0.30828677562772 3 3 0 -5.78615563839446 LTS-025 chrX 118514073 118893413 379341 * c(SLC25A5-AS1, SLC25A43, SEPT6, SLC25A5, SOWAHD, NKRF, CXorf56, UBE2A, MIR766) 0.401783992025885 11 0.140752587575117 0.984047706496397 497 0.286446713439731 3 2 1 -6.89002746614903 LTS-025 chrX 118893414 118894077 664 * SOWAHD 0 1 NA 1.01609707663092 11 0.885946735521847 3 3 0 -5.76441311105403 LTS-025 chrX 118894078 122250581 3356504 * c(ZBTB33, AKAP14, RHOXF1, NKAPP1, ATP1B4, CT47A11, SNORA69, GLUD2, MCTS1, C1GALT1C1, SOWAHD, LAMP2, NDUFA1, TMEM255A, RPL39, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, RNF113A, NKAP, CUL4B) 0.191600236536968 11 0.221618345154662 1.02980832825948 1039 0.349034844001459 3 2 1 -7.08994899044696 LTS-025 chrX 122250582 122250996 415 * character(0) 0.461 1 NA 1.29519499504857 7 0.346038739917671 4 4 0 -5.76441476185615 LTS-025 chrX 122250997 123195035 944039 * c(STAG2, GRIA3, XIAP, THOC2) 0.398294383343369 14 0.171563223216514 1.04894186261927 546 0.319018129672675 3 2 1 -6.89095893096268 LTS-025 chrX 123195036 123211971 16936 * STAG2 0 1 NA 1.02284831996722 45 0.274826672650236 3 3 0 -5.76534249748682 LTS-025 chrX 123211972 123775809 563838 * c(TENM1, STAG2, SH2D1A) 0.112112524390086 9 0.203744938587441 1.08573109779919 417 0.521135847954399 3 3 0 -6.84208989510842 LTS-025 chrX 123775810 124456399 680590 * c(TEX13C, TENM1) 0.477 1 NA 1.06469846615898 93 0.530659537632921 3 3 0 -5.78639567890494 LTS-025 chrX 124456400 128724525 4268126 * c(TEX13C, PRR32, DCAF12L1, ACTRT1, DCAF12L2, OCRL, SMARCA1) 0.360878549512821 10 0.198962866440505 1.0745432015652 386 0.346285626730686 3 2 1 -7.1008939748389 LTS-025 chrX 128724526 128938513 213988 * c(OCRL, ZDHHC9, SASH3, XPNPEP2, APLN) 0 1 NA 1.03394725599814 331 0.376935376497722 3 3 0 -5.7723925363892 LTS-025 chrX 128938514 130223373 1284860 * c(ENOX2, UTP14A, GPR119, ARHGAP36, ELF4, ZDHHC9, RBMX2, ZNF280C, BCORL1, SLC25A14, AIFM1, RAB33A) 0.0841341156891758 26 0.194736381966849 1.04629785050888 1140 0.608455781004829 3 3 0 -6.79354023464629 LTS-025 chrX 130223374 130223760 387 * ARHGAP36 0.473 1 NA 1.06886390833214 7 0.142027998581098 3 3 0 -5.7645960735797 LTS-025 chrX 130223761 131211235 987475 * c(ARHGAP36, FIRRE, OR13H1, IGSF1, STK26, FRMD7) 0.284752473937523 9 0.23071254360736 1.08760820687966 298 0.455679366433359 4 3 1 -6.78386272006663 LTS-025 chrX 131211236 131212420 1185 * FRMD7 0 1 NA 1.22617918827711 23 1.06456399247351 4 4 0 -5.76441017018755 LTS-025 chrX 131212421 135056226 3843806 * c(MIR450B, LINC00633, LINC00629, HS6ST2-AS1, PLAC1, FAM122B, FAM122C, INTS6L, ZNF449, GPC4, FAM127B, GPC3, HPRT1, CCDC160, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, TFDP3, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, RAP2C, SMIM10, SMIM10L2B, MIR542, CT45A2, ZNF75D, USP26, PHF6, MIR503HG, FAM127A, HS6ST2, FRMD7, MMGT1) 0.144507465532058 29 0.213815024102657 1.0506028827375 1907 0.396837542288018 3 3 0 -7.05740149040395 LTS-025 chrX 135056227 135252041 195815 * c(SLC9A6, FHL1) 0.479 1 NA 1.03520379774985 153 0.241777924996224 3 3 0 -5.78259443625973 LTS-025 chrX 135252042 135431358 179317 * c(ADGRG4, FHL1, MAP7D3) 0.45817651471625 12 0.0305677340284877 1.11151137803016 314 0.397554011218272 4 2 2 -9.74753496362323 LTS-025 chrX 135431359 135439865 8507 * ADGRG4 0 1 NA 1.18664418221778 41 0.572731506073117 4 4 0 -5.76443540708384 LTS-025 chrX 135439866 138708377 3268512 * c(MIR934, LINC00892, FGF13-AS1, ADGRG4, LINC00889, F9, FGF13, SNORD61, RBMX, HTATSF1, MCF2, VGLL1, MIR504, SRD5A1P1, BRS3, ZIC3, GPR101, ARHGEF6, CD40LG) 0.15564627946101 18 0.222378093210346 1.07155979520008 953 0.71666388620489 4 3 1 -6.94862447490929 LTS-025 chrX 138708378 138897130 188753 * c(ATP11C, MCF2) 0.435 1 NA 1.01624901881746 215 0.212895707789357 3 3 0 -5.77910549719232 LTS-025 chrX 138897131 139865525 968395 * c(CDR1, ATP11C, LINC00632, CXorf66, LOC389895, MIR505, SOX3) NA 0 NA 0.923940912217442 185 0.244903137042975 3 NA NA -5.7677031774095 LTS-025 chrX 139865526 140994517 1128992 * c(MIR320D2, CDR1, MAGEC3, NA, NA, LDOC1, SPANXA2-OT1, SPANXC, MAGEC1) 0.416722748014664 12 0.139094555804839 1.13545700516795 195 0.543588284796221 4 2 2 -6.82082360139056 LTS-025 chrX 140994518 140995215 698 * MAGEC1 0 1 NA 1.4424168711241 13 1.71480755068825 5 5 0 -5.76441062614245 LTS-025 chrX 140995216 144905273 3910058 * c(SLITRK4, SPANXN3, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, SLITRK2, MAGEC1) 0.222513864059999 16 0.246349472294949 1.14903408186024 506 0.70578586794192 4 3 1 -6.774680788327 LTS-025 chrX 144905274 144910142 4869 * c(SLITRK2, TMEM257) 0.387 1 NA 1.06451858708368 69 0.358705063634313 3 3 0 -5.76475459296868 LTS-025 chrX 144910143 148562599 3652457 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR514B, FMR1NB, FMR1, AFF2, IDS, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, TMEM257) 0.321116041017038 15 0.208654693099343 1.08367420490093 699 0.357845221200053 4 2 2 -7.04419976644468 LTS-025 chrX 148562600 148615819 53220 * c(LINC00893, IDS) 0 1 NA 1.0698528008255 144 0.348207496704854 3 3 0 -5.76873438359902 LTS-025 chrX 148615820 150842606 2226787 * c(LINC00893, LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA8-AS1, PASD1, VMA21, HMGB3, MAGEA8, MAGEA11, MTM1, CXorf40B, CD99L2, TMEM185A, MTMR1, CXorf40A, GPR50) 0.133517637089344 20 0.205449084485158 1.07804260468407 1054 0.541400780138228 3 3 0 -6.94958125733207 LTS-025 chrX 150842607 150845008 2402 * PASD1 0.415 1 NA 1.11474865830087 17 0.362191420384305 4 4 0 -5.76452619211268 LTS-025 chrX 150845009 151122980 277972 * c(CNGA2, PASD1, GABRE, MAGEA4, PRRG3, FATE1) 0.352641055968752 10 0.196034577448866 1.10333895842152 311 0.351426126716776 4 2 2 -6.75413483030729 LTS-025 chrX 151122981 151125954 2974 * GABRE 0 1 NA 1.21225864969815 29 0.682458481387501 4 4 0 -5.76441150956505 LTS-025 chrX 151125955 152027447 901493 * c(CSAG4, MAGEA10-MAGEA5, CETN2, CSAG1, GABRA3, GABRE, MIR105-1, MIR105-2, MAGEA3, MAGEA5, MAGEA6, MAGEA10, MAGEA12, NSDHL, GABRQ, MIR452, MIR767) 0.0628164287988977 6 0.187794213613377 1.09717839260995 505 0.369813348118965 4 4 0 -6.8087723749663 LTS-025 chrX 152027448 152031132 3685 * NSDHL NA 0 NA 1.927 1 NA NA NA NA NA LTS-025 chrX 152031133 152228048 196916 * c(PNMA5, PNMA3, NSDHL, ZNF185) 0.166787906779655 7 0.168062346707858 1.60398771084496 269 0.706328675203276 6 5 1 -6.74238893479206 LTS-025 chrX 152228049 152228447 399 * PNMA3 0.368 1 NA 1.54146226525348 7 0.440501229661545 5 5 0 -5.76441020619219 LTS-025 chrX 152228448 152748225 519778 * c(NA, NA, ZNF275, TREX2, ZFP92, PNMA3, MAGEA1, HAUS7) 0.246072422818427 15 0.164147436630552 1.53598664738676 337 0.690306653046467 5 4 1 -6.75265180585767 LTS-025 chrX 152748226 152748783 558 * HAUS7 0 1 NA 1.62607607520005 2 0.634274782724333 5 5 0 -5.7644132320971 LTS-025 chrX 152748784 153035405 286622 * c(BCAP31, PNCK, DUSP9, ABCD1, ATP2B3, PLXNB3, HAUS7, BGN, SLC6A8, FAM58A) 0.064775627434791 10 0.115741522367731 1.58343652826847 713 0.492062076416314 5 5 0 -6.8094977263087 LTS-025 chrX 153035406 153035798 393 * PLXNB3 0.355 1 NA 1.91798780087708 7 0.460917718098516 6 6 0 -5.76441292579736 LTS-025 chrX 153035799 153051907 16109 * c(SRPK3, IDH3G, PLXNB3) 0.251986492254492 13 0.143676720452549 1.59253369638843 261 0.522262333708576 4 3 1 -6.73952422825464 LTS-025 chrX 153051908 153127574 75667 * c(IDH3G, L1CAM, PDZD4, SSR4) 0 1 NA 1.54420097142912 191 0.492390526388065 5 5 0 -5.76442667878841 LTS-025 chrX 153127575 153179298 51724 * c(L1CAM, ARHGAP4, AVPR2) 0.08925413455915 13 0.143369345505827 1.64221529985426 319 1.18094566289119 12 11 1 -6.74767599330266 LTS-025 chrX 153179299 153195393 16095 * c(ARHGAP4, NAA10) 0.268 1 NA 1.57883798285151 61 0.475914988735102 5 5 0 -5.7644526586465 LTS-025 chrX 153195394 153626649 431256 * c(MIR718, MIR3202-2, MIR3202-1, TEX28, EMD, FLNA, OPN1MW, HCFC1, IRAK1, MECP2, OPN1LW, RENBP, RPL10, NAA10, TMEM187, TKTL1) 0.256618578735922 23 0.145966873170734 1.53943518850555 1111 0.463720891197474 5 4 1 -6.7784033859088 LTS-025 chrX 153626650 153904473 277824 * c(GAB3, DNASE1L1, G6PD, GDI1, SNORA70, CTAG2, ATP6AP1, PLXNA3, FAM3A, RPL10, TAZ, UBL4A, LAGE3, SLC10A3, IKBKG, FAM50A) 0.299275789329195 12 0.231308972824426 1.07581253513014 902 0.361520908688291 3 2 1 -6.76643180344028 LTS-025 chrX 153904474 154002888 98415 * c(GAB3, DKC1, SNORA36A) 0 1 NA 1.01415925586129 171 0.383859151728877 3 3 0 -5.76664697124535 LTS-025 chrX 154002889 154490446 487558 * c(SMIM9, CMC4, RAB39B, DKC1, F8, MPP1, MTCP1, FUNDC2, SNORA56, VBP1, BRCC3) 0.136520751133497 15 0.212302950655762 1.03450268488889 761 0.45008384441485 3 3 0 -6.87886403020965 LTS-025 chrX 154490447 154774986 284540 * c(RAB39B, CLIC2, TMLHE) NA 0 NA 1.02481692820732 147 0.273695707533805 3 NA NA -5.78090042879243 LTS-025 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.435734190224525 27 0.194987931542682 1 NA NA -6.21398458018918 LTS-025 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.717587755486949 23 0.621881084295022 2 NA NA -5.89278822032423 LTS-025 chr1 65893 762320 696428 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.288 1 NA 1.67597411682449 25 0.491601915510236 6 6 0 -5.76911905711528 LTS-026 chr1 762321 792446 30126 * c(LINC01128, LINC00115) NA 0 NA 1.52299675297445 21 0.210120679610551 6 NA NA -5.76518496911933 LTS-026 chr1 792447 861264 68818 * c(LOC100130417, SAMD11, FAM41C, LINC01128) NA 0 NA 0.997 1 NA NA NA NA NA LTS-026 chr1 861265 1534177 672913 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.40834931484547 65 0.0889121271039775 1.06224690422637 2647 0.252340906788673 3 2 1 -6.74916035886286 LTS-026 chr1 1534178 1588717 54540 * c(MIB2, FNDC10, MMP23B, CDK11B) 0.420173012154231 5 0.0777064990846969 1.28256596339366 219 0.447117232751341 5 3 2 -6.73503525815287 LTS-026 chr1 1588718 1593768 5051 * c(SLC35E2B, CDK11B) 0.274 1 NA 0.806932670652236 44 0.410749701308152 2 2 0 -5.76442262980009 LTS-026 chr1 1593769 1593784 16 * c(SLC35E2B, CDK11B) NA 0 NA 1.256 1 NA NA NA NA NA LTS-026 chr1 1593785 1596067 2283 * c(SLC35E2B, CDK11B) 0.341 1 NA 1.60827788886646 52 0.314771455193327 6 6 0 -5.76441179968092 LTS-026 chr1 1596068 1596153 86 * c(SLC35E2B, CDK11B) NA 0 NA 1.233 1 NA NA NA NA NA LTS-026 chr1 1596154 1639726 43573 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.359455588419243 8 0.0589308008236295 0.95871446617318 136 0.32982421929235 1 1 0 -6.78872785195195 LTS-026 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.011 1 NA NA NA NA NA LTS-026 chr1 1643792 1647814 4023 * c(CDK11A, SLC35E2B, CDK11B) 0.483 1 NA 0.442065620953029 39 0.332640894828463 0 0 0 -5.76441326100303 LTS-026 chr1 1647815 1647871 57 * c(CDK11A, SLC35E2B, CDK11B) 0.469 1 NA 0.785 1 NA NA NA NA NA LTS-026 chr1 1647872 1659652 11781 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.433541442665198 10 0.0574012194992406 1.10610784583489 61 0.829272985302792 4 2 2 -6.73459577282275 LTS-026 chr1 1659653 1659669 17 * c(SLC35E2B, SLC35E2) NA 0 NA 0.696 1 NA NA NA NA NA LTS-026 chr1 1659670 1661928 2259 * c(SLC35E2B, SLC35E2) 0.382733911964016 4 0.0918526900350048 0.676175524937163 42 0.151402678960061 3 2 1 -6.76420221490569 LTS-026 chr1 1661929 2522204 860276 * c(LOC100129534, NA, RER1, LOC115110, FAM213B, CALML6, FAAP20, GABRD, GNB1, TMEM52, HES5, PEX10, PANK4, PRKCZ, SKI, NADK, SLC35E2B, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, SLC35E2) 0.445326950769765 26 0.0542326044424881 1.09760914985947 1525 0.316442103991834 4 2 2 -6.82471376279818 LTS-026 chr1 2522205 2706237 184033 * c(TTC34, FAM213B, MMEL1) NA 0 NA 1.0708442911213 155 0.182578619802214 3 NA NA -5.77253871209054 LTS-026 chr1 2706238 2937987 231750 * character(0) NA 0 NA 0.879 1 NA NA NA NA NA LTS-026 chr1 2937988 2938265 278 * ACTRT2 0.333 1 NA 0.82595614050368 7 0.623121367066832 2 2 0 -5.76441013870061 LTS-026 chr1 2938266 6932152 3993887 * c(LINC01134, MIR4251, MIR4252, MIR4689, MIR4417, ACOT7, TPRG1L, ACTRT2, PHF13, CCDC27, DFFB, MEGF6, CAMTA1, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, GPR153, SMIM1, RNF207, HES3, LINC00982, WRAP73, HES2, DNAJC11, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, THAP3, CEP104, KLHL21) 0.263763050338408 89 0.0498207127795161 0.880771669412534 3498 0.327587563752265 2 2 0 -6.82493749843108 LTS-026 chr1 6932153 6946145 13993 * CAMTA1 NA 0 NA 0.596 1 NA NA NA NA NA LTS-026 chr1 6946146 10355748 3409603 * c(ENO1-AS1, UBE4B, UTS2, PARK7, RBP7, SLC2A7, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TNFRSF9, MIR34A, RERE, SLC45A1, PIK3CD, ERRFI1, CTNNBIP1, PIK3CD-AS1, NMNAT1, SLC2A5, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, VAMP3, H6PD) 0.283355931025297 36 0.0894916684957808 0.699502442522202 2773 0.178087642856449 1 1 0 -7.54949306496074 LTS-026 chr1 10355749 10355752 4 * KIF1B NA 0 NA 0.763 1 NA NA NA NA NA LTS-026 chr1 10355753 16360308 6004556 * c(NPPA-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, MAD2L2, PDPN, MASP2, CTRC, FHAD1, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, CORT, C1orf127, C1orf64, DFFA, TMEM51-AS1, SPEN, KIF1B, PLEKHM2, KAZN, DNAJC16, TARDBP, MTOR, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, DRAXIN, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, NA NA NA NA NA NA NA NA NA LTS-026 NPPA, NPPB, CELA2B, PEX14, PGD, PLOD1, EXOSC10, FBLIM1, CASZ1, TMEM51, VPS13D, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2, KIAA2013, DHRS3, C1orf158, FBXO44, TNFRSF8, MFN2) 0.289952097253648 121 0.0752934470458358 0.784110960691585 6657 0.241761527027076 2 2 0 -6.95608165876457 LTS-026 NA NA NA NA LTS-026 chr1 16360309 16360407 99 * c(CLCNKA, CLCNKB) NA 0 NA 0.676 1 NA NA NA NA NA LTS-026 chr1 16360408 16371067 10660 * c(CLCNKA, CLCNKB) 0.365335468121593 2 0.0692964645562816 0.382933106023339 38 0.306258475657093 1 1 0 -6.78076943348732 LTS-026 chr1 16371068 16371125 58 * CLCNKB NA 0 NA 0.825 1 NA NA NA NA NA LTS-026 chr1 16371126 16802550 431425 * c(CROCCP3, CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.332025035523976 28 0.0845874207316416 0.784978922617271 840 0.183609385290367 2 2 0 -7.06147352013744 LTS-026 chr1 16802551 16802964 414 * CROCCP3 NA 0 NA 0.523 1 NA NA NA NA NA LTS-026 chr1 16802965 16978916 175952 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.315253487310967 29 0.12254822113137 0.576681044738437 166 0.425519887805321 1 1 0 -6.78625626658581 LTS-026 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.891 1 NA NA NA NA NA LTS-026 chr1 17009684 17046531 36848 * ESPNP 0.29691441231401 17 0.130043997079721 1.14122171438522 127 0.352204833469687 5 4 1 -6.7405165947513 LTS-026 chr1 17046532 17046549 18 * ESPNP 0.088 1 NA 0.154 1 NA NA NA NA NA LTS-026 chr1 17046550 17198553 152004 * c(MST1L, ESPNP, CROCC) 0.288408513485077 19 0.114705343334448 0.825648187614338 157 0.29599587203755 2 2 0 -6.7484125986978 LTS-026 chr1 17198554 17248432 49879 * CROCC NA 0 NA 1.954 1 NA NA NA NA NA LTS-026 chr1 17248433 17277562 29130 * CROCC 0.400360540510869 8 0.127208981601143 1.6464826822145 85 0.423620024231589 8 5 3 -6.73648712795489 LTS-026 chr1 17277563 17277587 25 * CROCC NA 0 NA 0.94 1 NA NA NA NA NA LTS-026 chr1 17277588 17301672 24085 * c(MFAP2, CROCC) 0.317494312220643 3 0.097923439482077 0.91890054372994 107 0.218362014365092 4 3 1 -6.79272703853569 LTS-026 chr1 17301673 17301780 108 * MFAP2 0.196 1 NA 0.687965112574787 3 0.397019311033271 1 1 0 -5.76441245545997 LTS-026 chr1 17301781 19223560 1921780 * c(MIR4695, PADI2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.213902202643078 62 0.0608402820996509 1.00343204399761 1593 0.372076593091233 3 3 0 -6.74022769954221 LTS-026 chr1 19223561 19228933 5373 * ALDH4A1 NA 0 NA 0.94 1 NA NA NA NA NA LTS-026 chr1 19228934 24862779 5633846 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, RCAN3, LYPLA2, CNR2, IFFO2, MYOM3, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LOC284632, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, NA NA NA NA NA NA NA NA NA LTS-026 LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PNRC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, ALDH4A1, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.225474278127421 141 0.071890699994464 0.916712430382036 7882 0.288981788013265 3 3 0 -7.15932205810147 LTS-026 NA NA NA NA LTS-026 chr1 24862780 25599166 736387 * c(SRRM1, RCAN3, CLIC4, SYF2, NCMAP, RSRP1, RHD, RUNX3) 0.148556706755766 4 0.182444512112587 0.832057498488465 554 0.237987273735859 2 2 0 -6.9880002283249 LTS-026 chr1 25599167 25656954 57788 * c(RSRP1, RHD) 0.276873804373533 2 0.0169705627484771 1.75645011825121 75 0.482531734287595 9 7 2 -6.75604450063058 LTS-026 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.933 1 NA NA NA NA NA LTS-026 chr1 25666924 31899542 6232619 * c(MATN1-AS1, MIR1976, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, PDIK1L, PAQR7, FAM76A, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, HMGN2, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, NA NA NA NA NA NA NA NA NA LTS-026 XKR8, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, PTAFR, RHCE, RPA2, RPS6KA1, GPATCH3, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, SLC30A2, LAPTM5, AUNIP, NKAIN1, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, MAP3K6, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 ) 0.250378436572115 92 0.055180509933679 0.8823584973108 6923 0.210347854079966 2 2 0 -7.12595150307893 LTS-026 NA NA NA NA LTS-026 chr1 31899543 32280666 381124 * c(MIR4254, COL16A1, LINC01225, LINC01226, HCRTR1, SERINC2, PEF1, ADGRB2, TINAGL1, SPOCD1) 0.196764459145936 15 0.0462398508812886 1.04631859830412 865 0.287030088800821 4 4 0 -6.82945774063324 LTS-026 chr1 32280667 34330067 2049401 * c(FAM229A, MIR3605, KHDRBS1, AZIN2, TMEM54, CSMD2, HMGB4, RNF19B, A3GALT2, DCDC2B, ZNF362, PHC2, TXLNA, AK2, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, TRIM62, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, ZSCAN20, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.297201624882041 23 0.122679536902874 0.936410995818293 3072 0.268866299118153 2 2 0 -7.00706375281364 LTS-026 chr1 34330068 34684572 354505 * c(CSMD2, HMGB4, CSMD2-AS1, C1orf94) NA 0 NA 0.980062434755069 92 0.242186670856124 3 NA NA -5.76992507679809 LTS-026 chr1 34684573 35184033 499461 * C1orf94 0.447 1 NA 1.36760353012188 11 0.25580376001217 5 5 0 -5.76694480584076 LTS-026 chr1 35184034 43149070 7965037 * c(NFYC-AS1, MIR4255, MIR3659, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, SMIM12, TMCO2, ZNF684, GJB4, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, CSF3R, MANEAL, CTPS1, CITED4, EDN2, AGO3, AGO4, SLFNL1, FHL3, FOXJ3, SCMH1, NCDN, MACF1, MYCBP, HEYL, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, TFAP2E, ZFP69, NA NA NA NA NA NA NA NA NA LTS-026 BMP8A, INPP5B, MIR30C1, MIR30E, MTF1, MYCL, NDUFS5, NFYC, YBX1, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, PPT1, MAP7D1, PSMB2, DLGAP3, HIVEP3, RLF, CLSPN, OXCT2, RRAGC, SFPQ, KIAA0754, SMAP2, MEAF6, EXO5, MRPS15, ZFP69B, LOC653160, BMP8B, SNORA55, LINC01137, PPIEL, CCDC30, DNALI1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, ZMYND12, NT5C1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MFSD2A, LSM10, PABPC4, KCNQ4, ZMYM4, ZMYM6, RIMS3, THRAP3) 0.418580682871028 167 0.0740359184516524 1.17670678443592 9144 0.282900447793031 4 2 2 -6.79410610668423 LTS-026 NA NA NA NA LTS-026 chr1 43149071 43159036 9966 * YBX1 NA 0 NA 1.864 1 NA NA NA NA NA LTS-026 chr1 43159037 45092067 1933031 * c(LOC100129924, KDM4A-AS1, MIR5584, EBNA1BP2, MED8, ERMAP, KLF17, TMEM125, CLDN19, CFAP57, C1orf210, CCDC24, DPH2, SZT2, SVBP, MPL, SLC2A1-AS1, FAM183A, YBX1, ZNF691, ATP6V0B, RNF220, DMAP1, PTPRF, P3H1, ELOVL1, ST3GAL3, SLC2A1, SLC6A9, TIE1, ERI3, C1orf50, HYI, B4GALT2, ARTN, IPO13, KDM4A, CDC20) 0.422089118844662 52 0.045853626386474 1.25307995682552 2879 0.27713885452648 4 2 2 -6.77281341936446 LTS-026 chr1 45092068 45097533 5466 * RNF220 NA 0 NA 1.062 1 NA NA NA NA NA LTS-026 chr1 45097534 54231559 9134026 * c(EFCAB14-AS1, MIR761, MKNK1-AS1, LOC100507564, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, OSBPL9, PLK3, CCDC163, DMBX1, PODN, CPT2, KNCN, MOB3C, GLIS1, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, SLC25A3P1, ELAVL4, CYP4Z1, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, MMACHC, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, GPX7, C1orf228, NA NA NA NA NA NA NA NA NA LTS-026 TCTEX1D4, FAM159A, IPP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MAGOH, ZYG11A, MUTYH, NASP, NRDC, ORC1, PRDX1, TXNDC12, TMEM69, CMPK1, LURAP1, SPATA6, C1orf123, RNF220, ECHDC2, POMGNT1, NDC1, ZSWIM5, RAB3B, GPBP1L1, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, TAL1, RPS15AP10, FAAHP1, UQCRH, UROD, LRP8, TMEM53, HECTD3, BEND5, ZYG11B, RAD54L, FOXD2-AS1, HPDL, AGBL4, PRPF38A, PIK3R3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MKNK1, PTCH2, EIF2B3, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, EFCAB14) 0.424382246948516 185 0.0731629750390779 1.19791545174319 8522 0.287716520570413 4 2 2 -6.7437240221169 LTS-026 NA NA NA NA LTS-026 chr1 54231560 67243486 13011927 * c(LINC01135, MIR3117, MIR3671, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, MYSM1, OMA1, LRRC42, TCEANC2, C1orf87, UBE2U, CYP2J2, DAB1, LEXM, KANK4, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, TCTEX1D1, AK4, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, ALG6, FAM151A, JAK1, JUN, MROH7, LDLRAD1, LEPR, MIR101-1, TACSTD2, MGC34796, NFIA, ROR1, MRPL37, HOOK1, NA NA NA NA NA NA NA NA NA LTS-026 PDE4B, HSPB11, PGM1, YIPF1, L1TD1, LEPROT, TTC22, RAVER2, FGGY, PRKAA2, NDC1, CACHD1, CYB5RL, TTC4, HSD52, C8A, C8B, USP1, BSND, DLEU2L, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, PLPP3, TMEM59, DNAJC6) 0.423629744248002 154 0.102063554025673 1.11099242449118 7017 0.301158290963005 4 2 2 -7.30162347618885 LTS-026 NA NA NA NA LTS-026 chr1 67243487 79411951 12168465 * c(ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, MGC27382, CTH, IL23R, GADD45A, TCTEX1D1, SLC44A5, USP33, SLC35D1, ST6GALNAC3, NEGR1, ZZZ3, SERBP1, AK5, SNORD45B, SNORD45A, ACADM, IL12RB2, MIGA1, C1orf141, MIR186, LHX8, MSH4, TNNI3K, PIN1P1, GIPC2, LRRC40, DEPDC1, GNG12, PTGER3, PTGFR, LRRC7, MIER1, RABGGTB, NA NA NA NA NA NA NA NA NA LTS-026 RPE65, ADGRL4, SNORD45C, WDR78, WLS, ANKRD13C, ST6GALNAC5, FPGT, FUBP1, DIRAS3, NEXN, SRSF11, ZRANB2) 0.432969556926478 71 0.0995140688515768 1.03048476430223 5526 0.322143549325987 3 2 1 -6.80672407584621 LTS-026 NA NA NA NA LTS-026 chr1 79411952 79472387 60436 * ADGRL4 0 1 NA 1.34612707936636 14 0.343668828578129 5 5 0 -5.76488570199013 LTS-026 chr1 79472388 79474751 2364 * ADGRL4 0 1 NA 1.28203176218882 5 0.758944464371406 4 4 0 -5.76441845724264 LTS-026 chr1 81967377 85537725 3570349 * c(MIR548AP, SSX2IP, WDR63, SAMD13, CTBS, ADGRL2, LPAR3, MCOLN2, GNG5, UOX, LINC01555, MCOLN3, PRKACB, DNASE2B, TTLL7, RPF1) 0.379237677001049 9 0.0450558295648607 0.747262508032651 1394 0.196113570042582 2 1 1 -7.96953516588374 LTS-026 chr1 85537726 85538693 968 * WDR63 NA 0 NA 1.216 1 NA NA NA NA NA LTS-026 chr1 85538694 89301916 3763223 * c(LINC01364, MIR4423, CLCA1, WDR63, C1orf52, CLCA4, DDAH1, COL24A1, LINC01140, CYR61, SH3GLB1, ZNHIT6, PKN2, ODF2L, LOC646626, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.326325417506961 33 0.047969470246789 0.876775040160191 1932 0.229211164342839 2 2 0 -7.59779630875209 LTS-026 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.658 1 NA NA NA NA NA LTS-026 chr1 89318581 94041762 4723182 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.331332328768126 36 0.0791346601966827 0.805426467247706 3402 0.204641410911694 2 2 0 -7.12661825185789 LTS-026 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.078 1 NA NA NA NA NA LTS-026 chr1 94047868 110215863 16167996 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, HENMT1, OLFM3, CNN3, SLC44A3, ATXN7L2, C1orf194, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, FNDC7, SASS6, AGL, DPYD, S1PR1, CELSR2, ALG14, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKNAD1, RWDD3, AMPD2, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM2, GSTM4, NA NA NA NA NA NA NA NA NA LTS-026 GPSM2, SLC25A24, DNTTIP2, MYBPHL, FRRS1, MIR137HG, MIR137, MIR197, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRPF38B, PRMT6, RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, PTBP2, ABCD3, SORT1, SARS, SPATA42, MFSD14A, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, LOC729970, LOC729987, VCAM1, GPR61, BCAR3, PSRC1, CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.31869448970088 88 0.0817099188665019 0.863472325332025 7141 0.269043517143318 2 2 0 -7.15944042938669 LTS-026 NA NA NA NA LTS-026 chr1 110215864 110260864 45001 * c(GSTM1, GSTM2, GSTM5) NA 0 NA 0.654309530265304 110 0.103249762362228 1 NA NA -5.7660344423588 LTS-026 chr1 110260865 111061011 800147 * c(LAMTOR5-AS1, LAMTOR5, AHCYL1, CSF1, UBL4B, ALX3, GSTM3, GSTM5, KCNA10, KCNC4, SLC6A17, LOC440600, CYMP, RBM15, EPS8L3, PROK1, STRIP1, SLC16A4) 0.325385630092115 15 0.0526767320098551 0.839488072556237 1063 0.189883803457604 2 2 0 -7.33408663890117 LTS-026 chr1 111061012 111061653 642 * KCNA10 0.296 1 NA 0.908567429826443 13 0.789062272086791 2 2 0 -5.76441539162451 LTS-026 chr1 111061654 111147639 85986 * c(KCNA2, KCNA10) NA 0 NA 0.824170774925377 71 0.140533940135399 2 NA NA -5.76448184780405 LTS-026 chr1 111147640 111214256 66617 * KCNA2 NA 0 NA 1.353 1 NA NA NA NA NA LTS-026 chr1 111214257 118727881 7513625 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, BCAS2, CEPT1, AP4B1, PHTF1, WDR3, MAN1A2, CHI3L2, DDX20, MAB21L3, DRAM2, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, SPAG17, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, IGSF3, PPM1J, KCNA3, KCND3, RHOC, MOV10, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, SLC22A15, LRIF1, NA NA NA NA NA NA NA NA NA LTS-026 CTTNBP2NL, FAM212B, OLFML3, PTGFRN, RAP1A, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, CASQ2, TTF2, ATP1A1-AS1, CD2, CD101, CD53, CD58, LRIG2) 0.401893828108865 134 0.0924257310873412 1.00816723028185 7050 0.290590103569668 3 2 1 -6.73942314241328 LTS-026 NA NA NA NA LTS-026 chr1 119425646 121116733 1691088 * c(SRGAP2D, WARS2, ADAM30, HSD3BP4, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, HIST2H2BA, NBPF7, NOTCH2, HAO2, LINC00622, FAM72B, TBX15, REG4, ZNF697) 0.378435214205216 29 0.0911865813090799 1.18345538310318 1240 0.60707616466768 3 2 1 -6.82751129540444 LTS-026 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 1.14778953592502 59 0.289842724235953 4 NA NA -5.76827617102173 LTS-026 chr1 143912360 144013853 101494 * FAM72D 0.235 1 NA 0.85672138409825 5 0.227536150973862 2 2 0 -5.76572949051763 LTS-026 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.424603126575565 55 0.0684568580504643 1.15454744971306 527 0.258016915509093 4 2 2 -6.75846876485775 LTS-026 chr1 145075855 145075903 49 * c(NBPF20, PDE4DIP) 0.233 1 NA 1.2870495624468 3 0.343779483584075 4 4 0 -5.76441107301537 LTS-026 chr1 145075904 145417548 341645 * c(NBPF10, NBPF20, HFE2, NOTCH2NL, SEC22B, PDE4DIP) 0.273442772302547 31 0.102629231409891 1.18276392548543 296 0.764094225965865 5 4 1 -6.77136906381565 LTS-026 chr1 145417549 145438581 21033 * c(NBPF10, NBPF20, TXNIP) 0.369 1 NA 1.1591831862458 5 0.35070329339771 4 4 0 -5.76459617573431 LTS-026 chr1 145438582 149764220 4325639 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, TXNIP, CD160, LIX1L, ANKRD35, NBPF12, PDIA3P1, NUDT17, FCGR1A, FMO5, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, LINC01138, LOC388692, HIST2H2BF, ACP6, GPR89B, PDZK1, PRKAB2, LINC00869, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.399816454456109 31 0.088812100793258 1.1575617410998 2048 0.291064781635524 4 2 2 -6.86334400746278 LTS-026 chr1 149764221 151497174 1732954 * c(MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, POGZ, RPRD2, CA14, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, HIST2H3D, VPS72, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, NA NA NA NA NA NA NA NA NA LTS-026 HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.395774406841155 43 0.100181225598152 1.02579349349895 4254 0.294483234920996 3 2 1 -6.73464238056222 LTS-026 NA NA NA NA LTS-026 chr1 151497175 151497202 28 * CGN 0.478 1 NA 0.91 1 NA NA NA NA NA LTS-026 chr1 151497203 151501888 4686 * CGN 0.5 1 NA 1.15823780675996 16 0.404104111997556 4 4 0 -5.76444255568941 LTS-026 chr1 151501889 151501893 5 * CGN NA 0 NA 1.229 1 NA NA NA NA NA LTS-026 chr1 151501894 152760349 1258456 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.413785043187203 37 0.0962414771391312 1.20633417615232 1915 0.366395510417502 4 2 2 -6.75151879010661 LTS-026 chr1 152760350 152777462 17113 * c(LCE1C, LCE1D, LCE1E) 0.387408244144377 11 0.0464323554901497 2.05874719669947 53 0.957983252941966 16 10 6 -6.73617816483211 LTS-026 chr1 152777463 153751221 973759 * c(SLC27A3, PGLYRP3, S100A16, LELP1, SPRR4, SNAPIN, CHTOP, S100A7A, LCE1A, LCE1B, LCE1C, ILF2, IVL, LOR, SMCP, LCE6A, NPR1, PGLYRP4, S100A14, PRR9, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.390944656639423 12 0.186262502122595 1.16590050077945 1354 0.34712277390644 4 2 2 -6.7667818798199 LTS-026 chr1 153751222 156838499 3087278 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, CREB3L4, DCST1, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, RUSC1, C1orf43, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, INSRR, KCNN3, C1orf189, VHLL, LMNA, NA NA NA NA NA NA NA NA NA LTS-026 MIR9-1, MEF2D, MTX1, MUC1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.448300754622182 61 0.0850392259216604 1.27023847601826 8327 0.26748892369068 4 2 2 -6.81995293344229 LTS-026 NA NA NA NA LTS-026 chr1 156838500 161310541 4472042 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, FCRL1, FCRL3, KLHDC9, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, LRRC71, PYHIN1, ETV3, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, OR10R2, FCRL6, CYCSP52, PEAR1, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LY9, MNDA, MPZ, ETV3L, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NA NA NA NA NA NA NA NA NA LTS-026 NHLH1, NIT1, NTRK1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, KIRREL, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, LOC646268, SLAMF1, PCP4L1, SPTA1, USF1, MIR765, FCRL2, OR6N2, OR6K2, NECTIN4, FCRL5, FCRL4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, CD1A, CD1B, CD1C, CD1D, CD1E, DEDD, CD5L, PIGM, IGSF8, AIM2, ADAMTS4, CD48, ARHGEF11, NR1I3) 0.447937078016752 184 0.0748678950593651 1.40006534297439 7202 0.50202822600248 5 3 2 -6.83101716017383 LTS-026 NA NA NA NA LTS-026 chr1 161310542 161326556 16015 * SDHC NA 0 NA 1.173 1 NA NA NA NA NA LTS-026 chr1 161326557 161559327 232771 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, SDHC, FCGR2C) 0.400330861974341 19 0.0724678997296601 1.20868768856012 237 0.258021506809246 3 2 1 -6.79352267982944 LTS-026 chr1 161559328 161559407 80 * FCGR2C NA 0 NA 2.315 1 NA NA NA NA NA LTS-026 chr1 161559408 161641357 81950 * c(FCGR2B, FCGR3B, HSPA7, FCGR2C) 0.316099924567484 12 0.0610178190566022 1.78233557451946 167 0.389765951666039 8 6 2 -6.75080715376668 LTS-026 chr1 161641358 161642720 1363 * FCGR2B NA 0 NA 0.781 1 NA NA NA NA NA LTS-026 chr1 161642721 168160731 6518011 * c(MIR921, MIR3658, LOC100505795, MIR4654, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, FCGR2B, ALDH9A1, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, RGS4, RXRG, RPL31P11, UAP1, MIR556, UCK2, NUF2, FCRLA, RGS5, MAEL, CREG1, MPZL1, CD247, DUSP27, RCSD1, NOS1AP NA NA NA NA NA NA NA NA NA LTS-026 ) 0.453872879202667 96 0.0358171709776485 1.32734697217002 4000 0.337229896012633 4 2 2 -7.25739960139643 LTS-026 NA NA NA NA LTS-026 chr1 168160732 168161304 573 * TIPRL NA 0 NA 0.996 1 NA NA NA NA NA LTS-026 chr1 168161305 176563711 8402407 * c(MIR1295A, MIR3119-1, MIR3120, MIR3119-2, LOC100505918, LOC100506023, GAS5-AS1, DNM3OS, MIR1295B, SLC19A2, RC3H1, METTL11B, DPT, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, TIPRL, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, LINC01142, NME7, ANKRD45, FASLG, SFT2D2, FMO6P, SERPINC1, MYOC, ATP1B1, SUCO, METTL13, PIGC, PRRX1, DARS2, C1orf112, SCYL3, CCDC181, GAS5, PAPPA2, NA NA NA NA NA NA NA NA NA LTS-026 SNORD74, XCL1, TNN, MRPS14, SELE, SELL, SELP, RFWD2, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR557, TNR, TOP1P1, TNFSF4, LOC730159, LINC00626, MROH9, ZBTB37, ANKRD36BP1, BLZF1, VAMP4, TNFSF18, TBX19, CENPL, METTL18, GORAB, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.406966047838976 91 0.063842627408974 1.18502684491349 5361 0.701294567586415 4 2 2 -6.81905370032536 LTS-026 NA NA NA NA LTS-026 chr1 176563712 177001896 438185 * c(ASTN1, MIR488, PAPPA2) 0.390312233805682 4 0.0204287379280594 1.4158070434481 412 0.341261779302362 6 4 2 -6.98664595578776 LTS-026 chr1 177001897 177030213 28317 * ASTN1 0 1 NA 1.77518160014013 5 2.84795642522845 7 7 0 -5.76441015925448 LTS-026 chr1 177030214 178359283 1329070 * c(RASAL2-AS1, ASTN1, BRINP2, LOC730102, SEC16B, RASAL2) 0.28908326676749 3 0.222737513679218 1.38078195317423 313 0.293212662897809 5 4 1 -6.73537861501294 LTS-026 chr1 178359284 178888005 528722 * c(MIR4424, C1orf220, RALGPS2, TEX35, ANGPTL1, RASAL2) NA 0 NA 1.10820973078609 552 0.368875508322532 3 NA NA -5.78076486165996 LTS-026 chr1 178888006 183907245 5019240 * c(GM140, MIR3121, LHX4-AS1, ARPC5, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, IER5, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, TOR3A, SOAT1, CACNA1E, NPHS2, NPL, SHCBP1L, ACBD6, RGS8, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.270863949754512 112 0.0571473511143101 1.00987843967564 5308 0.257736124136784 3 3 0 -7.18484273006756 LTS-026 chr1 183907246 186265948 2358703 * c(GS1-279B7.1, MIR548F1, RNU6-72P, PRG4, IVNS1ABP, TSEN15, FAM129A, COLGALT2, SWT1, RNF2, EDEM3, C1orf21, TRMT1L, HMCN1) 0.301903086196382 21 0.0773911524412867 0.89129254818974 1771 0.210898321126741 2 2 0 -6.99832175595605 LTS-026 chr1 186265949 186270894 4946 * c(MIR548F1, RNU6-72P, PRG4) 0.375 1 NA 0.859552440380625 13 0.164714905215041 2 2 0 -5.76455818410567 LTS-026 chr1 186270895 190250883 3979989 * c(MIR548F1, RNU6-72P, PRG4, OCLM, BRINP3, PDC, PLA2G4A, C1orf27, PTGS2, TPR) 0.326950112934461 9 0.0499324543758866 0.892324726283883 750 0.248143556039834 2 2 0 -7.63253271482673 LTS-026 chr1 190250884 215256757 25005874 * c(MIR181A1HG, MIR1231, MIR1278, ZBED6, MIR4260, MIR3122, PCAT6, MIR4735, MIR5191, LINC00538, TIMM17A, LRRN2, CENPF, KDM5B, CFHR4, CFHR3, IL24, CHI3L1, CHIT1, SLC26A9, ATP6V1G3, ARL8A, SYT2, LINC00628, GOLT1A, TATDN3, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, SPATA45, FAM71A, CTSE, CD55, DENND1B, EIF2D, ELF3, ELK4, F13B, PLEKHA6, KIF21B, NFASC, NA NA NA NA NA NA NA NA NA LTS-026 CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, INTS7, ASPM, NSL1, OPTC, RPS6KC1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, FLVCR1, UBE2T, NENF, IL19, CFH, CFHR1, CFHR2, HSD11B1, BRINP3, RD3, KCNT2, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KCNK2, KISS1, C1orf53, TMEM81, LAD1, LAMB3, NA, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, RGS21, LOC440704, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, GLRX2, ADIPOR1, CDK18, UCHL5, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, LAX1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, LINC00862, YOD1, PRELP, BATF3, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, PROX1, SMYD2, LHX9, CAMK1G, SERTAD4-AS1, PTPN7, PTPN14, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RGS1, RGS2, RGS13, RNPEP, MGAT4EP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MIR205HG, FLVCR1-AS1, RGS18, NUCKS1, ASCL5, SRGAP2C, SNRPE, TROVE2, SNORA77, CNTN2, SNORA16B, TNNI1, TNNT2, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, SLC30A1, CACNA1S, BTG2, C1orf116, CDC73, VASH2, TRAF3IP3, CFHR5, NUAK2, DDX59, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, B3GALT2, RAB29, NAV1, ANGEL2, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 TMCC2, LPGAT1, KIF14) 0.330788141989897 444 0.0646983954551718 0.846043819384766 18481 0.248089568708042 2 2 0 -7.32558395977481 LTS-026 NA NA NA NA LTS-026 chr1 215256758 215259677 2920 * KCNK2 NA 0 NA 1.092 1 NA NA NA NA NA LTS-026 chr1 215259678 218510944 3251267 * c(LINC00210, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, USH2A) 0.349497453351532 13 0.0390906244907513 0.932020435743793 1267 0.244431470996445 3 2 1 -7.84817595292843 LTS-026 chr1 218510945 231762607 13251663 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, LYPLAL1, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, ITPKB, ARF1, MIA3, NA NA NA NA NA NA NA NA NA LTS-026 STUM, FAM89A, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, RRP15, TRIM17, EGLN1, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, LYPLAL1-AS1, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, TGFB2, LEFTY2, TLR5, TP53BP2, TSNAX, TGFB2-AS1, WNT9A, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, GNPAT, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.325966088068117 226 0.0646409992243903 0.829361403807089 10445 0.225146188497575 2 2 0 -7.15191861673686 LTS-026 NA NA NA NA LTS-026 chr1 231762608 231859181 96574 * c(TSNAX-DISC1, DISC1) 0.393 1 NA 0.823413192594318 54 0.145130988570553 2 2 0 -5.76451449331535 LTS-026 chr1 231859182 232650533 791352 * c(TSNAX-DISC1, DISC2, DISC1, SIPA1L2) 0.38517708695614 6 0.0182290976189169 0.830328900237425 372 0.176944053420142 3 2 1 -7.68485454601611 LTS-026 chr1 232650534 234456023 1805490 * c(MIR4671, MIR4427, SLC35F3, KCNK1, MAP10, SIPA1L2, PCNX2, NTPCR, MLK4) 0.420810874424213 33 0.0476562819796216 0.937515984359927 818 0.228457448249953 3 2 1 -6.98579797232759 LTS-026 chr1 234456024 234458756 2733 * SLC35F3 NA 0 NA 0.691 1 NA NA NA NA NA LTS-026 chr1 234458757 236175437 1716681 * c(MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, NID1, ARID4B, SNORA14B, TARBP1, TBCE, GGPS1, TOMM20) 0.394629199459514 12 0.0601232950366213 0.846682929811297 1367 0.205624463599049 2 1 1 -6.95288108352305 LTS-026 chr1 236175438 236176282 845 * NID1 NA 0 NA 0.94 1 NA NA NA NA NA LTS-026 chr1 236176283 236899015 722733 * c(LGALS8-AS1, EDARADD, LGALS8, NID1, HEATR1, ERO1B, GPR137B, ACTN2) 0.397700895573635 57 0.0540502817512868 0.968365144765092 837 0.252933521040342 3 2 1 -6.75175537140339 LTS-026 chr1 236899016 241958586 5059571 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, FH, OPN3, LINC01139, MTR, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, KMO, ACTN2) 0.365481129573793 33 0.0505812989456608 1.09221493407992 2140 0.404791778633721 4 3 1 -7.04836162480166 LTS-026 chr1 241958587 246931057 4972471 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, WDR64, ADSS, CNST, PLD5, C1orf100, LOC255654, C1orf101, NA, HNRNPU, LOC339529, MAP1LC3C, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, LINC01347, EFCAB2, EXO1, CEP170) 0.304545316310013 24 0.0777155720877582 1.29003676093467 2027 0.366128774722636 5 4 1 -6.88636509407954 LTS-026 chr1 246931058 246931119 62 * SCCPDH 0.379 1 NA 1.7339737548043 2 0.58972705550958 7 7 0 -5.76441021088403 LTS-026 chr1 246931120 247274421 343302 * c(ZNF670-ZNF695, LINC01341, AHCTF1, C1orf229, SCCPDH, ZNF695, ZNF669, ZNF670) 0.349649792532549 3 0.00680685928555402 1.35972862572373 504 0.459679461657217 1 1 0 -7.24530641977365 LTS-026 chr1 247274422 247274538 117 * C1orf229 NA 0 NA 1.617 1 NA NA NA NA NA LTS-026 chr1 247274539 248616541 1342003 * c(MIR3916, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2T2, OR2W5, OR13G1, ZNF124, OR2L5, OR2G3, OR2G2, OR2C3, ZNF496) 0.326712795732559 51 0.0620500746551193 1.61275443723296 1270 0.738510301213727 7 5 2 -6.77096681873369 LTS-026 chr1 248616542 248637366 20825 * c(OR2T3, OR2T2) 0.35675845746907 3 0.0992790679515744 0.792222094085995 69 0.992870426878291 1 1 0 -6.7365756395638 LTS-026 chr1 248637367 248790256 152890 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T5) 0.372376758201547 8 0.085673383097836 1.52671956214801 122 0.726358295698374 6 4 2 -6.73556835458516 LTS-026 chr1 248790257 248790355 99 * OR2T11 NA 0 NA 1.477 1 NA NA NA NA NA LTS-026 chr1 248790356 248802625 12270 * c(OR2T11, OR2T35) 0.42088990455906 7 0.102511787940054 3.85086899796495 38 9.13417958474346 14 8 6 -6.73303503494883 LTS-026 chr1 248802626 248813185 10560 * character(0) NA 0 NA 1.158 1 NA NA NA NA NA LTS-026 chr1 248813186 249211619 398434 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.346476644270068 11 0.061712382726793 1.43870938127455 316 0.348284251122655 4 3 1 -6.79511311610984 LTS-026 chr1 249211620 249214134 2515 * PGBD2 NA 0 NA 1.41520420318484 45 0.302670249277956 5 NA NA -5.76441201389673 LTS-026 chr2 38824 40569 1746 * FAM110C 0.494 1 NA 1.1294952464544 33 0.194752859122437 4 4 0 -5.76453976337122 LTS-026 chr2 40570 3447635 3407066 * c(TMEM18, MYT1L, SH3YL1, FAM150B, LINC01115, TRAPPC12, ACP1, SNTG2, FAM110C, TPO, TSSC1, MYT1L-AS1, PXDN) 0.377271479326144 27 0.0874288640427534 1.2185128079046 1124 0.334114094694839 4 3 1 -6.83092460395449 LTS-026 chr2 3447636 3460970 13335 * TRAPPC12 NA 0 NA 0.944 1 NA NA NA NA NA LTS-026 chr2 3460971 11716568 8255598 * c(SNORA80B, MIR4261, LINC01304, RNASEH1-AS1, LOC100506274, MIR4429, LINC00570, PDIA6, YWHAQ, CMPK2, MBOAT2, C2orf50, PQLC3, LINC01105, E2F6, CYS1, ATP6V1C2, RNASEH1, IAH1, FLJ33534, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, C2orf48, KCNF1, RNF144A-AS1, LOC400940, LINC00487, ODC1, TRAPPC12, CPSF3, ADI1, ALLC, KIDINS220, RPS7, RRM2, SOX11, ADAM17, LINC01249, COLEC11, NOL10, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NA NA NA NA NA NA NA NA NA LTS-026 ROCK2, GREB1, RNF144A) 0.389717583227831 68 0.0553897278299699 1.10139159192935 3532 0.294212569418289 3 2 1 -7.08080724665114 LTS-026 NA NA NA NA LTS-026 chr2 11716569 25100918 13384350 * c(MIR3125, MIR4262, LOC100506474, NT5C1B-RDH14, MIR4757, MYCNOS, ADCY3, KLHL29, OSR1, TTC32, FAM84A, GDF7, DDX1, UBXN2A, FKBP1B, LPIN1, PUM2, NTSR2, TRIB2, APOB, MSGN1, GEN1, PFN4, FAM228B, KCNS3, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, MYCN, ITSN2, NBAS, SF3B6, ATAD2B, WDR35, RDH14, LDAH, SDC1, HS1BP3, LOC645949, FAM228A, RAD51AP2, VSNL1, CENPO, SMC6, WDCP, FAM49A, NCOA1, NT5C1B, TP53I3, GREB1, NA NA NA NA NA NA NA NA NA LTS-026 LAPTM4A) 0.390638596900541 105 0.0847687945814882 1.14096874523042 5118 0.350047857482248 4 2 2 -7.07977977190658 LTS-026 NA NA NA NA LTS-026 chr2 25100919 25359422 258504 * c(ADCY3, EFR3B, DNAJC27, DNAJC27-AS1) 0.408 1 NA 1.12941873477104 227 0.224644883952447 4 4 0 -5.77883689889582 LTS-026 chr2 25359423 26396259 1036837 * c(MIR1301, RAB10, GAREM2, DNMT3A, DTNB, EFR3B, KIF3C, POMC, ASXL2) 0.439268319431004 7 0.0335779122411771 1.16455574282984 894 0.260107855679957 4 2 2 -6.78518760116515 LTS-026 chr2 26396260 26399137 2878 * GAREM2 NA 0 NA 1.383 1 NA NA NA NA NA LTS-026 chr2 26399138 27601621 1202484 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, EMILIN1, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, MAPRE3, DNAJC5G, GTF3C2, HADHA, HADHB, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17) 0.428099896631168 28 0.0960851143848474 1.26916429786697 3088 0.273724974099077 4 2 2 -6.7556243672993 LTS-026 chr2 27601622 30864983 3263362 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, NRBP1, C2orf71, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.455859078104565 39 0.0293175641578755 1.07732355310598 3185 0.235796576275807 4 2 2 -7.58433158132435 LTS-026 chr2 30864984 30866486 1503 * LCLAT1 0.241 1 NA 0.421020294062751 39 0.414203989200208 0 0 0 -5.76442952055666 LTS-026 chr2 30866487 30866585 99 * LCLAT1 NA 0 NA 1.137 1 NA NA NA NA NA LTS-026 chr2 30866586 33585779 2719194 * c(LOC100271832, MIR4765, LCLAT1, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.451309380636988 42 0.0767963693549973 1.14755225361941 2008 0.301332027950662 4 2 2 -6.82541965581927 LTS-026 chr2 33585780 33623674 37895 * LTBP1 0.447 1 NA 0.907728741137994 39 0.135678954438273 2 2 0 -5.77469414344561 LTS-026 chr2 33623675 33774761 151087 * c(RASGRP3, LTBP1) 0.372 1 NA 0.975276692289111 87 0.191863907205076 3 3 0 -5.76915449899437 LTS-026 chr2 33774762 37317871 3543110 * c(LOC100288911, MYADML, GPATCH11, RASGRP3, FAM98A, CRIM1, VIT, HEATR5B, STRN, FEZ2) 0.394857112240314 10 0.0607567097346275 0.945268238972854 1019 0.21995881436329 3 2 1 -6.97590336561601 LTS-026 chr2 37317872 37318950 1079 * GPATCH11 NA 0 NA 0.669 1 NA NA NA NA NA LTS-026 chr2 37318951 40339920 3020970 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.410109526516023 48 0.0538743572142464 0.881859381160049 2444 0.206639368023638 2 1 1 -6.98027794338027 LTS-026 chr2 40339921 40339986 66 * c(SLC8A1-AS1, SLC8A1) 0.415 1 NA 1.209 1 NA NA NA NA NA LTS-026 chr2 40339987 43792929 3452943 * c(SLC8A1-AS1, LINC01126, OXER1, KCNG3, HAAO, EML4, LOC388942, C2orf91, MTA3, THADA, SLC8A1, ZFP36L2, PKDCC, COX7A2L) 0.44066582299678 34 0.0522198919215606 1.02594517467856 1221 0.24930267066118 3 2 1 -7.07720097282151 LTS-026 chr2 43792930 43793252 323 * THADA NA 0 NA 1.424 1 NA NA NA NA NA LTS-026 chr2 43793253 55771392 11978140 * c(LINC01119, MIR3682, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, CFAP36, PPP1R21, C2orf73, CLHC1, PLEKHH2, EPAS1, PSME4, RHOQ, FSHR, ERLEC1, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, PRORSD1P, TMEM247, LINC01118, TSPYL6, LHCGR, LINC01121, EML6, EPCAM, MSH2, MTIF2, CHAC2, ASB3, DYNC2LI1, PIGF, PPM1B, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, RPS27A, THADA, ABCG5, ABCG8, SIX3, SLC3A1, SPTBN1, NA NA NA NA NA NA NA NA NA LTS-026 MIR559, C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, NRXN1, CRIPT, PREPL, SOCS5, ACYP2) 0.438600719397461 115 0.0728440682288208 1.12081883109535 5867 0.668616049047783 4 2 2 -6.83211973534373 LTS-026 NA NA NA NA LTS-026 chr2 55771393 55862162 90770 * c(CFAP36, PPP4R3B, PNPT1) 0 1 NA 1.06034828099084 159 0.197884172004267 3 3 0 -5.76660370964006 LTS-026 chr2 55862163 60695816 4833654 * c(MIR216B, MIR4432, CCDC85A, EFEMP1, LINC01122, MIR216A, MIR217, BCL11A, FANCL, VRK2, PNPT1) 0.395868995012432 13 0.12345351040278 1.1778827232821 659 0.35278879562803 4 2 2 -6.79679644924713 LTS-026 chr2 60695817 60695915 99 * BCL11A NA 0 NA 1.043 1 NA NA NA NA NA LTS-026 chr2 60695916 65559027 4863112 * c(SNORA70B, LOC100132215, DBIL5P2, MIR4434, MIR5192, ACTR2, CCT4, B3GNT2, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, SPRED2, CEP68, EHBP1, LGALSL, LOC339803, C2orf74, LOC339807, LINC01185, LOC400958, MDH1, OTX1, WDPCP, VPS54, PEX13, BCL11A, AFTPH, PELI1, RAB1A, REL, PAPOLG, SLC1A4, UGP2, XPO1, FAM161A, KIAA1841, USP34, SERTAD2) 0.358168287532845 21 0.174239913966484 1.06926080536665 3011 0.287975562710722 3 2 1 -6.84778514057612 LTS-026 chr2 65559028 65561392 2365 * SPRED2 0.414 1 NA 1.17423720390068 5 0.215250551683381 4 4 0 -5.76443710139809 LTS-026 chr2 65561393 68613744 3052352 * c(MIR4778, C1D, WDR92, SPRED2, CNRIP1, MEIS1, PLEK, ETAA1, PPP3R1, PNO1, LOC644838, MEIS1-AS3) 0.4303115734575 9 0.0343369739170151 1.1025608426748 661 0.332560788654712 4 2 2 -6.87202041448382 LTS-026 chr2 68613745 70781005 2167261 * c(SNORA36C, LOC100133985, MIR3126, PROKR1, SNRNP27, ASPRV1, GKN2, APLF, AAK1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, PLEK, C2orf42, FBXO48, GKN1, GMCL1, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.456476104645596 26 0.0328752420289424 1.00435458899809 2103 0.659822897575054 4 2 2 -7.18279025009594 LTS-026 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.252 1 NA NA NA NA NA LTS-026 chr2 70781031 73493833 2712803 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.405560051716427 34 0.159702988585937 1.10344627833371 2599 0.279316588677045 3 2 1 -6.86298493270389 LTS-026 chr2 73493834 73495802 1969 * FBXO41 NA 0 NA 0.833 1 NA NA NA NA NA LTS-026 chr2 73495803 74881727 1385925 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, SLC4A5, RTKN, TTC31, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.45340420175184 34 0.046092056998577 1.01739012043449 2759 0.220753675558864 4 2 2 -7.34725785157293 LTS-026 chr2 74881728 74882302 575 * SEMA4F NA 0 NA 1.652 1 NA NA NA NA NA LTS-026 chr2 74882303 87400212 12517910 * c(SNAR-H, ANAPC1P1, MIR4264, RNF103-CHMP3, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, REG3G, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, LOC285074, HK2, LRRTM1, FUNDC2P2, C2orf68, MAT2A, REG3A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, POLE4, KCMF1, REG1A, REG1B, REG1CP, SFTPB, RMND5A, REEP1, TACR1, SNORD94, GCFC2, RNF103, LRRTM4, CAPG, TCF7L1, NA NA NA NA NA NA NA NA NA LTS-026 EVA1A, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.454586353076795 86 0.0395637358307637 1.11137471137955 4300 0.25817206449176 4 2 2 -7.66016809036746 LTS-026 NA NA NA NA LTS-026 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.134 1 NA NA NA NA NA LTS-026 chr2 87404257 87424567 20311 * RMND5A 0.25 1 NA 0.486437142913334 69 0.462572049179381 0 0 0 -5.76480886609057 LTS-026 chr2 87424568 87424591 24 * RMND5A 0.44 1 NA 1.902 1 NA NA NA NA NA LTS-026 chr2 87424592 89197190 1772599 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.459930671030858 21 0.0303868705983671 1.14273657808374 675 0.33932876050571 4 2 2 -7.27259427682148 LTS-026 chr2 89197191 90108460 911270 * character(0) 0 1 NA 1.38742517300585 197 1.58857485824059 5 5 0 -5.76442823820909 LTS-026 chr2 90108461 91955462 1847002 * LOC654342 0.32966363070637 17 0.109793991585311 1.20237411549516 132 0.622493963704456 4 3 1 -6.74051383958269 LTS-026 chr2 91955463 91955470 8 * character(0) NA 0 NA 1.967 1 NA NA NA NA NA LTS-026 chr2 95537183 95537572 390 * c(TEKT4, LOC442028) 0.443 1 NA 1.21058153987225 9 0.309160736690659 4 4 0 -5.76441013622354 LTS-026 chr2 95537573 98736269 3198697 * c(MIR3127, ACTR1B, ARID5A, TRIM43, COX5B, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, KCNIP3, ANKRD36, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.402536948957914 67 0.0983421601416692 1.11509353606122 3497 0.324540597023202 3 2 1 -6.87768690527723 LTS-026 chr2 98736270 98737708 1439 * VWA3B NA 0 NA 1.431 1 NA NA NA NA NA LTS-026 chr2 98737709 101874442 3136734 * c(TXNDC9, TBC1D8, MGAT4A, CNGA3, NMS, LYG1, MITD1, C2orf15, LONRF2, VWA3B, LYG2, UNC50, KIAA1211L, INPP4A, AFF3, NPAS2, COA5, MRPL30, REV1, LIPT1, CNOT11, RPL31, PDCL3, TSGA10, CHST10, EIF5B) 0.420836015177787 18 0.0541078866589041 1.24541820052561 2624 0.277647599126019 4 2 2 -6.77355642213137 LTS-026 chr2 101874443 101886454 12012 * CNOT11 0.312 1 NA 1.30754515074147 33 0.256710819942903 5 5 0 -5.76492230456513 LTS-026 chr2 101886455 102785171 898717 * c(MIR5696, CREG2, RNF149, IL1R1, CNOT11, SNORD89, RFX8, IL1R2, MAP4K4) 0.303623765446142 9 0.210491752279698 1.2188840317366 539 0.353407867504949 4 3 1 -6.7530034386345 LTS-026 chr2 102785172 102794282 9111 * IL1R1 0.469 1 NA 1.21618884431466 55 0.296613578271149 4 4 0 -5.76441196215883 LTS-026 chr2 102794283 108877062 6082780 * c(LOC100287010, LINC01158, MIR4772, GPR45, TMEM182, LINC01102, FHL2, LINC01114, LOC285000, PLGLA, RGPD4, IL1R1, SLC9A4, SULT1C3, POU3F3, SLC5A7, MRPS9, RGPD3, SLC9A2, RGPD4-AS1, C2orf49, UXS1, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1) 0.442341264878262 44 0.0437502521889439 1.23374256478806 1975 0.336433160415689 4 2 2 -6.78786503209502 LTS-026 chr2 108877063 108877130 68 * SULT1C3 NA 0 NA 1.122 1 NA NA NA NA NA LTS-026 chr2 108877131 111923384 3046254 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, SULT1C2P1, CCDC138, LINC00116, SULT1C4, SH3RF3, LIMS1, SULT1C3, NPHP1, ACOXL, RANBP2, SOWAHC, SULT1C2, BUB1, MALL, GCC2) 0.437393635737792 18 0.057981995177002 1.14538016374901 1576 0.270091889796806 4 2 2 -6.81472397965804 LTS-026 chr2 111923385 112524547 601163 * c(BCL2L11, MIR4435-2HG) 0.292 1 NA 1.18026300131715 61 0.375493691782307 4 4 0 -5.76595298880623 LTS-026 chr2 112524548 113736700 1212153 * c(MERTK, FBLN7, TTL, CKAP2L, IL37, IL1A, IL1B, ZC3H6, FLJ42351, IL36G, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.31601103092608 12 0.206772364222254 1.1527347062806 1581 2.34139025737149 4 3 1 -6.7426914754574 LTS-026 chr2 113736701 113763463 26763 * c(IL36A, IL36G) 0.474 1 NA 1.17851306322811 35 0.251488299341903 4 4 0 -5.76458234901117 LTS-026 chr2 113763464 116257182 2493719 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL36A, IL1RN, WASH2P, DPP10-AS1, LINC01191, DPP10, FAM138B, PAX8-AS1, PAX8, SLC35F5, IL1F10, DDX11L2) 0.467377471098982 24 0.0320583706765453 1.18063466178946 979 0.3778628330184 4 2 2 -7.43722404878191 LTS-026 chr2 116257183 116283469 26287 * DPP10 NA 0 NA 1.727 1 NA NA NA NA NA LTS-026 chr2 116283470 130900955 14617486 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, MED15P9, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, FAR2P1, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, POTEF, TMEM185B, SAP130, TMEM177, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, MARCO, DDX18, CCDC74B, NA NA NA NA NA NA NA NA NA LTS-026 HS6ST1) 0.437813704958829 94 0.0925665095065367 1.24563884979856 5257 0.407540233212676 4 2 2 -6.78173148130198 LTS-026 NA NA NA NA LTS-026 chr2 130900956 130901978 1023 * CCDC74B NA 0 NA 0.836 1 NA NA NA NA NA LTS-026 chr2 130901979 130909310 7332 * c(SMPD4, CCDC74B) NA 0 NA 0.429218238067796 42 0.456049592836785 0 NA NA -5.7644464981432 LTS-026 chr2 130909311 142889274 11979964 * c(CCNT2-AS1, CYP4F30P, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4784, NXPH2, TUBA3E, TUBA3D, LYPD1, ACMSD, FAM168B, LOC150776, WTH3DI, DARS, AMER3, RAB3GAP1, UBXN4, R3HDM1, PTPN18, GPR39, C2orf27A, HNMT, SPOPL, NCKAP5, GPR148, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LOC440910, POTEE, ARHGEF4, LRP1B, PLEKHB2, ANKRD30BL, SMPD4, CFC1, YY1P2, POTEI, CFC1B, POTEJ, MZT2A, CXCR4, MZT2B, NA NA NA NA NA NA NA NA NA LTS-026 MAP3K19, THSD7B, TMEM163, ZRANB3, CCDC115, CCNT2, CCDC74A, IMP4) 0.429388365944583 109 0.0746238784946897 1.27083034405353 4456 0.335021216809069 4 2 2 -6.88539279591647 LTS-026 NA NA NA NA LTS-026 chr2 143642881 152482152 8839272 * c(ZEB2-AS1, MIR4773-1, MIR4773-2, LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, TEX41, NEB, ORC4, RIF1, MBD5, ARHGAP15, TNFAIP6, PABPC1P2, GTDC1, KYNU, NMI, ACVR2A, ZEB2) 0.440711556158459 30 0.112445343044582 1.1422974803237 2352 0.278093639211763 4 2 2 -6.95459280550414 LTS-026 chr2 152482153 152524253 42101 * NEB 0 1 NA 1.13996596841706 175 0.272186454735013 4 4 0 -5.76560887237854 LTS-026 chr2 152524254 153511027 986774 * c(STAM2, FMNL2, ARL5A, NEB, PRPF40A, CACNB4) 0.362503629390487 9 0.183074438412357 1.12544513869415 945 0.324168029601959 4 3 1 -6.76981983187182 LTS-026 chr2 153511028 153511786 759 * PRPF40A 0.444 1 NA 1.04886832530114 17 0.317871285918947 3 3 0 -5.76441387726235 LTS-026 chr2 153511787 158958483 5446697 * c(LOC100144595, GALNT5, GALNT13, ACVR1C, ARL6IP6, UPP2, GPD2, KCNJ3, NR4A2, PRPF40A, RPRM, ERMN, ACVR1, CYTIP) 0.440261881567518 16 0.0491290392741401 1.14325816729591 1259 0.289712796375479 4 2 2 -6.87716901354673 LTS-026 chr2 158958484 158958526 43 * UPP2 NA 0 NA 1.355 1 NA NA NA NA NA LTS-026 chr2 158958527 165561680 6603154 * c(TANK, SNORA70F, LY75-CD302, MIR4785, PSMD14, TBR1, CCDC148, WDSUB1, UPP2, DPP4, FAP, COBLL1, PLA2R1, GCA, GCG, AHCTF1P1, GRB14, BAZ2B, ITGB6, LY75, FIGN, CCDC148-AS1, SLC4A10, RBMS1, IFIH1, MARCH7, PKP4, TANC1, KCNH7, DAPL1, CD302) 0.418350615654483 54 0.0628928964357857 1.19102089588803 3289 0.276716123937222 4 2 2 -6.76840974866761 LTS-026 chr2 165561681 165578557 16877 * COBLL1 NA 0 NA 1.05 1 NA NA NA NA NA LTS-026 chr2 165578558 170366300 4787743 * c(LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.454453375729723 68 0.0354450786379268 1.07021974228043 3335 0.465385254638554 4 2 2 -7.18385580282263 LTS-026 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.909 1 NA NA NA NA NA LTS-026 chr2 170366321 176802261 6435941 * c(MIR933, SP9, NA, PHOSPHO2-KLHL23, KLHL41, RAPGEF4, CHN1, CHRNA1, CCDC173, UBR3, ATF2, MYO3B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, MLK7-AS1, ITGA6, SP5, LINC01124, PHOSPHO2, PDK1, ZAK, ATP5G3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, PPIG, CIR1, TLK1) 0.445942270642793 117 0.090576275025011 0.995328289542483 4643 0.266431120829713 3 2 1 -6.91328527827649 LTS-026 chr2 176802262 176803023 762 * LNPK NA 0 NA 1.304 1 NA NA NA NA NA LTS-026 chr2 176803024 179738743 2935720 * c(LOC100130691, MIR1246, MIR548N, MIR3128, HOXD-AS2, TTN-AS1, MTX2, OSBPL6, RBM45, TTC30B, HNRNPA3, CCDC141, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, NFE2L2, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, LNPK, AGPS, PRKRA, TTC30A) 0.43956577123519 90 0.0631596959382424 1.13178257649493 5004 0.268071107761504 4 2 2 -6.85136169292439 LTS-026 chr2 179738744 183943959 4205216 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, SESTD1) 0.464829066931419 29 0.0277020566183578 1.05819552069763 1690 0.247550307463947 4 2 2 -8.18739496949671 LTS-026 chr2 183943960 183948098 4139 * DUSP19 NA 0 NA 1.155 1 NA NA NA NA NA LTS-026 chr2 183948099 189599728 5651630 * c(CALCRL, DIRC1, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.455251142197957 60 0.0362199807516475 1.16377327868809 1803 0.466495978371271 4 2 2 -7.02020619625994 LTS-026 chr2 189599729 189839030 239302 * DIRC1 NA 0 NA 0.886 1 NA NA NA NA NA LTS-026 chr2 189839031 198950240 9111210 * c(LOC100130452, NEMP2, MIR1245A, MIR3129, MIR3606, HSPE1-MOB4, MIR1245B, OSGEPL1-AS1, COL3A1, COL5A2, RFTN2, ANKAR, SF3B1, TMEFF2, MOB4, HIBCH, MSTN, GLS, CCDC150, SLC40A1, HSPD1, HSPE1, INPP1, C2orf66, MYO1B, NAB1, PLCL1, PMS1, ASNSD1, MFSD6, DNAH7, SLC39A10, HECW2, PCGEM1, OSGEPL1, NABP1, BOLL, STAT1, STAT4, PGAP1, COQ10B, WDR75, C2orf88, SDPR, ANKRD44, STK17B, MARS2, GTF3C3, ORMDL1) 0.420824309252372 53 0.0438241058053345 0.988332526057122 5183 0.26894155182323 3 2 1 -6.93493713412557 LTS-026 chr2 198950241 200709099 1758859 * c(SATB2-AS1, SATB2, FTCDNL1, PLCL1) 0.379 1 NA 1.08709952630061 225 0.282459498993092 3 3 0 -5.81916989340879 LTS-026 chr2 200709100 200828842 119743 * c(TYW5, C2orf69, FTCDNL1, C2orf47) 0.399948219107826 4 0.0170195965482929 0.977375763635823 237 0.24414447463342 3 2 1 -6.73515185639107 LTS-026 chr2 200828843 200870439 41597 * C2orf47 NA 0 NA 0.774 1 NA NA NA NA NA LTS-026 chr2 200870440 203760987 2890548 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.356436666519313 50 0.047845077370315 0.85937841475297 3368 0.216802499459637 2 1 1 -7.96153674075954 LTS-026 chr2 203760988 203761938 951 * WDR12 NA 0 NA 1.095 1 NA NA NA NA NA LTS-026 chr2 203761939 209101972 5340034 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, MIR4775, ABI2, PARD3B, CPO, MDH1B, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, METTL21A, CCNYL1, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, IDH1, PLEKHM3, C2orf80, DYTN, NDUFS1, INO80D, WDR12, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, FZD5, CARF, KLF7, ADAM23, NRP2, CD28) 0.355582837448826 53 0.0741328290470922 0.910211955105366 3870 0.241550552395243 3 2 1 -7.57114592207595 LTS-026 chr2 209101973 209103877 1905 * IDH1 NA 0 NA 1.13 1 NA NA NA NA NA LTS-026 chr2 209103878 215891554 6787677 * c(LOC100130451, MIR548F2, IDH1-AS1, MIR4776-1, MIR4776-2, VWC2L-IT1, LANCL1, CPS1, KANSL1L, PIKFYVE, ERBB4, IKZF2, ABCA12, UNC80, CPS1-IT1, ACADL, IDH1, VWC2L, MAP2, MYL1, PTH2R, BARD1, RPE, SPAG16) 0.347186455696273 43 0.063157925773729 0.964144529857727 2859 0.294147964172803 3 2 1 -7.26744493038556 LTS-026 chr2 215891555 220194170 4302616 * c(LOC100129175, MIR3131, ABCB6, ARPC2, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, FN1, CFAP65, PNKD, ABCA12, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, ATIC, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, NA NA NA NA NA NA NA NA NA LTS-026 VIL1, WNT6, XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.338579788240878 64 0.0932297881729749 0.885199994604111 5401 0.32783364668573 2 2 0 -7.14452876338995 LTS-026 NA NA NA NA LTS-026 chr2 220194171 220194366 196 * RESP18 NA 0 NA 1.062 1 NA NA NA NA NA LTS-026 chr2 220194367 230411808 10217442 * c(MIR4268, MIR3132, FARSB, MIR4439, MIR5702, MIR5703, SPEG, STK11IP, MOGAT1, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, CCDC140, DAW1, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, GMPPA, AGFG1, INHA, IRS1, RESP18, PAX3, SERPINE2, PID1, ASIC4, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, SLC4A3, MRPL44, LOC654841, SCG2, CHPF, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER) 0.325262106794678 88 0.128923415741427 0.931693866652231 4854 0.310246452853522 3 2 1 -7.40083267207262 LTS-026 chr2 230411809 235949877 5538069 * c(LOC100286922, MIR1471, MIR4777, ARL4C, NMUR1, SP140, CHRND, CHRNG, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, DNAJB3, NCL, NEU2, NPPC, PDE6D, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, NA NA NA NA NA NA NA NA NA LTS-026 HJURP, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, ARMC9, EFHD1, ITM2C, DGKD, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.358495964751114 127 0.0615126421913116 0.885683977298476 5312 0.239722442783768 2 1 1 -7.71006751325541 LTS-026 NA NA NA NA LTS-026 chr2 235949878 235949920 43 * SH3BP4 0.413 1 NA 1.02913241562782 3 0.354220740969997 3 3 0 -5.76441015409765 LTS-026 chr2 235949921 239093977 3144057 * c(UBE2F-SCLY, RAMP1, COPS8, AGAP1, COL6A3, UBE2F, SH3BP4, GBX2, ESPNL, RBM44, KLHL30, ASB18, PRLH, SCLY, ACKR3, RAB17, MLPH, IQCA1, ILKAP, LRRFIP1) 0.374753874701093 63 0.0698553732327217 0.906933063315535 2150 0.229559821198423 3 2 1 -7.2614360017121 LTS-026 chr2 239093978 239096790 2813 * ILKAP NA 0 NA 0.694 1 NA NA NA NA NA LTS-026 chr2 239096791 243037218 3940428 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, HES6, RNPEPL1, GAL3ST2, LOC643387, PRR21, AQP12B, BOK, D2HGDH, NA NA NA NA NA NA NA NA NA LTS-026 LOC728323, C2orf54, ILKAP, ING5, MGC16025, PER2, HDAC4, FARP2) 0.401653463823811 136 0.0540207168966731 0.857488826558621 4712 0.475778155542643 2 1 1 -6.91384363141877 LTS-026 NA NA NA NA LTS-026 chr3 239351 361508 122158 * CHL1 0.425 1 NA 1.04135189001574 9 0.684674192590899 3 3 0 -5.76448337540781 LTS-026 chr3 361509 2861340 2499832 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6) 0.463874110635863 3 0.0300499584026335 1.09921073127585 365 0.187737376980825 4 2 2 -7.75436822491706 LTS-026 chr3 2861341 2908483 47143 * CNTN4 NA 0 NA 0.767 1 NA NA NA NA NA LTS-026 chr3 2908484 4685818 1777335 * c(CNTN4, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.431425898852642 19 0.108967402175339 0.925161895775889 639 0.397470507062446 2 1 1 -6.81415033432963 LTS-026 chr3 4685819 5255126 569308 * c(EGOT, BHLHE40-AS1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.453172748800859 9 0.0293759160613664 0.781832103078723 605 0.195198069968996 2 1 1 -7.09545523145012 LTS-026 chr3 5255127 8920505 3665379 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, RAD18, CAV3, EDEM1) 0.428332432352499 24 0.0965808871031075 0.942582458766136 630 0.285703678188409 3 2 1 -6.94367963272786 LTS-026 chr3 8920506 8920602 97 * RAD18 NA 0 NA 0.706 1 NA NA NA NA NA LTS-026 chr3 8920603 14207048 5286446 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, RPUSD3, PRRT3, LINC00606, LINC00620, HRH1, TPRXL, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, GHRL, PPARG, SETD5, TMEM40, EMC3, BRK1, RAD18, RAF1, RPL32, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A11, NA NA NA NA NA NA NA NA NA LTS-026 SYN2, TIMP4, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, JAGN1, LINC00852, IL17RC, CAMK1, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.428385528402195 99 0.0705407420532621 0.836360017631545 5540 0.202092944454886 2 1 1 -6.74058359624281 LTS-026 NA NA NA NA LTS-026 chr3 14207049 35723430 21516382 * c(PDCD6IP, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, LRRC3B, GALNT15, CCR4, KCNH8, TRIM71, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, FGD5, DAZL, STT3B, CLASP2, GPD1L, RFTN1, PLCL2, ANKRD28, CAPN7, FBXL2, CNOT10, SUSD5, HACL1, GLB1, LSM3, RBMS3, NKIRAS1, LINC00692, DPH3, LOC339862, GADL1, NA NA NA NA NA NA NA NA NA LTS-026 ZNF860, COL6A4P1, VENTXP7, DYNC1LI1, CCDC174, CMTM6, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, TMPPE, MRPS25, THRB-AS1, LINC00693, SLC6A6, BTD, MIR563, TGFBR2, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, UBP1, XPC, ZNF385D, GRIP2, COLQ, EOMES, C3orf20, EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.45405543308906 168 0.0529076579876509 0.777123210565648 7923 0.462148651165106 2 1 1 -7.08588469676757 LTS-026 NA NA NA NA LTS-026 chr3 35723431 35724313 883 * ARPP21 NA 0 NA 0.922 1 NA NA NA NA NA LTS-026 chr3 35724314 36873669 1149356 * c(ARPP21, MIR128-2, STAC, DCLK3, TRANK1) 0.390184136902216 9 0.151900552262912 0.89787263195799 446 0.363807651785054 2 1 1 -6.80888820791032 LTS-026 chr3 36873670 36873674 5 * TRANK1 NA 0 NA 0.759 1 NA NA NA NA NA LTS-026 chr3 36873675 43414418 6540744 * c(ACVR2B-AS1, KRBOX1, SNRK-AS1, CCDC13-AS1, CTDSPL, EIF1B, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SNRK, SLC25A38, ULK4, ANO10, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, NA NA NA NA NA NA NA NA NA LTS-026 FAM198A, VIPR1, POMGNT2, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.456233602857783 139 0.0485161800518882 0.801019393744861 6402 0.233122775529241 2 1 1 -6.97600660532746 LTS-026 NA NA NA NA LTS-026 chr3 43414419 43474046 59628 * ANO10 NA 0 NA 1.216 1 NA NA NA NA NA LTS-026 chr3 43474047 44544139 1070093 * c(TCAIM, ZNF445, TOPAZ1, MIR138-1, ABHD5, ANO10) 0.420414208532405 7 0.062449979983984 0.945889989035809 618 0.193030548399417 3 2 1 -6.89032821139437 LTS-026 chr3 44544140 44544396 257 * ZNF445 NA 0 NA 0.75 1 NA NA NA NA NA LTS-026 chr3 44544397 46713671 2169275 * c(LOC100132146, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, XCR1, ZNF660, ZNF445, LTF, ZDHHC3, LZTFL1, SLC6A20, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2, ZNF502) 0.439944344496509 76 0.0923943293999321 0.773672685594736 3254 0.181470913129114 2 1 1 -6.91883285075444 LTS-026 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 0.835 1 NA NA NA NA NA LTS-026 chr3 46714809 47079213 364405 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.464742705611327 17 0.0356965355049874 0.866351869083189 864 0.391969207372927 2 1 1 -7.2375959977769 LTS-026 chr3 47079214 47452118 372905 * c(KLHL18, PTPN23, KIF9-AS1, SETD2, KIF9) 0.443806299461033 9 0.0539330861139781 0.764067252932197 553 0.146843852498281 2 1 1 -6.83558023930824 LTS-026 chr3 47452119 47627996 175878 * c(CSPG5, SCAP, PTPN23, ELP6, SMARCC1) 0 1 NA 0.826294805890054 355 0.242053060261293 2 2 0 -5.76442293338526 LTS-026 chr3 47627997 47870611 242615 * c(DHX30, SMARCC1) 0.44 1 NA 0.740482425263387 222 0.124224739252709 2 2 0 -5.8811060649025 LTS-026 chr3 47870612 47882314 11703 * DHX30 NA 0 NA 0.942 1 NA NA NA NA NA LTS-026 chr3 47882315 50938502 3056188 * c(BSN-AS2, MIR1226, MIR711, MIR4271, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, TREX1, TUSC2, CISH, COL7A1, LSMEM2, DAG1, DOCK3, CELSR3, KLHDC8B, DHX30, LAMB2P1, NAT6, NDUFAF3, AMT, GNAI2, GNAT1, FBXW12, GPX1, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, C3orf62, AMIGO3, RHOA, CDHR4, FAM212A, LAMB2, MIR191, MAP4, NA NA NA NA NA NA NA NA NA LTS-026 TMEM89, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, TMA7, ZNF589, HEMK1, IP6K2, NCKIPSD, PFKFB4, PLXNB1, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, RNF123, SEMA3F, SPINK8, ARIH2OS, C3orf84, CCDC71, SLC26A6, TCTA, UBA7, USP4, UQCRC1, IFRD2, MAPKAPK3, SEMA3B, SLC25A20, CAMKV, CCDC51, CAMP, HYAL3, ATRIP, NICN1, MON1A, HYAL2, BSN, UCN2, CACNA2D2, IP6K1, CDC25A) 0.40533040899294 48 0.115485100816678 0.897345949840894 8095 0.18414624211699 2 1 1 -7.08799060301472 LTS-026 NA NA NA NA LTS-026 chr3 50938503 50939115 613 * DOCK3 NA 0 NA 1.073 1 NA NA NA NA NA LTS-026 chr3 50939116 54420859 3481744 * c(SNORD19B, LINC00696, PARP3, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, NISCH, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, GRM2, RBM15B, ITIH1, ITIH3, ITIH4, TMEM110, IQCF2, IQCF5, MUSTN1, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, TEX264, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, SELENOK, RPL29, NA NA NA NA NA NA NA NA NA LTS-026 NT5DC2, NEK4, SNORD19, SNORD69, TKT, TNNC1, CACNA1D, MANF, WDR82, BAP1, ABHD14B, RRP9, RFT1, ACTR8, ACY1, DCAF1) 0.371666990270612 61 0.0877045836263478 1.03257330297396 5595 0.224135277030829 3 2 1 -6.80242539947309 LTS-026 NA NA NA NA LTS-026 chr3 54420860 54537550 116691 * CACNA2D3 NA 0 NA 1.141 1 NA NA NA NA NA LTS-026 chr3 54537551 55733587 1196037 * c(CACNA2D3-AS1, ERC2, CACNA2D3, LRTM1, ERC2-IT1, WNT5A, ESRG) 0.403527280388253 6 0.0466022174007489 1.16111299839007 374 0.290027894451809 3 2 1 -6.87825885523084 LTS-026 chr3 55733588 57678661 1945074 * c(MIR3938, ARHGEF3-AS1, ASB14, DNAH12, PDE12, DENND6A, FAM208A, ERC2, APPL1, CCDC66, SPATA12, ARF4, ARHGEF3, IL17RD, HESX1) 0.366262827385564 33 0.082760207188838 0.971198120415253 1723 0.243295474950527 3 2 1 -6.87666760110363 LTS-026 chr3 57678662 58551571 872910 * c(RPP14, FAM107A, DNASE1L3, KCTD6, DENND6A, FLNB, PDHB, PXK, ABHD6, SLMAP, ACOX2) 0.358535296228159 12 0.0234719368221248 1.12587825990216 1146 0.228765716065172 4 3 1 -7.07296437079149 LTS-026 chr3 58551572 58625975 74404 * c(FAM107A, FAM3D) 0.436 1 NA 1.0640595810384 92 0.19843784567294 3 3 0 -5.76652660273092 LTS-026 chr3 58625976 59033091 407116 * c(FAM3D, C3orf67) 0.446 1 NA 1.03375375754202 194 0.288365812945543 3 3 0 -5.76501248059452 LTS-026 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.959 1 NA NA NA NA NA LTS-026 chr3 59035205 65433796 6398592 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.452295871145142 31 0.0878029685735202 1.26029619143579 1778 0.294267206448871 4 2 2 -6.84294252662819 LTS-026 chr3 65433797 65438823 5027 * MAGI1 NA 0 NA 1.144 1 NA NA NA NA NA LTS-026 chr3 65438824 74413676 8974853 * c(MIR1284, MIR3136, MIR4272, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.446797224314646 49 0.0762352137999839 1.11478941340474 2639 0.296688587806591 4 2 2 -7.14195549127602 LTS-026 chr3 74413677 74414768 1092 * CNTN3 0 1 NA 1.20143960252365 7 1.41803042481968 4 4 0 -5.76441014960715 LTS-026 chr3 74414769 74419157 4389 * CNTN3 NA 0 NA 1.09542339591446 13 0.201318092477985 3 NA NA -5.76474935383236 LTS-026 chr3 74419158 74420309 1152 * CNTN3 NA 0 NA 1.403 1 NA NA NA NA NA LTS-026 chr3 74420310 75785519 1365210 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.335219773427194 92 0.0874862974732644 1.46220879209791 200 0.67172396802638 4 3 1 -6.80106615040866 LTS-026 chr3 75785520 75785525 6 * ZNF717 NA 0 NA 0.534 1 NA NA NA NA NA LTS-026 chr3 75785526 75790585 5060 * ZNF717 0.325667701279838 93 0.104939711982667 1.15796112268379 163 0.494754248584551 7 5 2 -6.74498026566232 LTS-026 chr3 75790586 75790607 22 * ZNF717 0.481 1 NA 0.914 1 NA NA NA NA NA LTS-026 chr3 75790608 88206531 12415924 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.449003905593037 43 0.0764829036549673 1.13579433744546 1461 0.387318312643117 4 2 2 -6.95794135321328 LTS-026 chr3 88206532 90283666 2077135 * c(EPHA3, C3orf38) NA 0 NA 1.16899118197159 213 0.260302104020362 4 NA NA -5.78579370132736 LTS-026 chr3 93591838 94225007 633170 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.341 1 NA 1.10961327547823 355 0.260524013323651 3 3 0 -5.80470733887278 LTS-026 chr3 94225008 108268924 14043917 * c(ZBTB11-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, LOC152225, GABRR3, ALCAM, MYH15, LINC00879, ABI3BP, OR5K1, OR5H1, ZBTB11, GPR15, LINC00636, EPHA6, PDCL3P4, DUBR, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, IMPG2, TRMT10C, TMEM45A, IFT57, TBC1D23, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NFKBIZ, NA NA NA NA NA NA NA NA NA LTS-026 TMEM30CP, MIR548A3, OR5H6, OR5H2, CEP97, OR5AC2, ARL6, CMSS1, CCDC54, MINA, ADGRG7, CBLB, NXPE3, CD47, TOMM70) 0.432547201431096 80 0.0882672724876274 1.05446127898828 4640 0.289493652830397 3 2 1 -6.92833179656355 LTS-026 NA NA NA NA LTS-026 chr3 108268925 111694294 3425370 * c(PVRL3-AS1, CD96, DPPA2, PLCXD2, NECTIN3, MORC1, FLJ22763, LINC01205, TRAT1, DPPA4, KIAA1524, LINC00488, ZBED2, RETNLB, PHLDB2, GUCA1C, DZIP3) 0.372316851306578 8 0.154751355867589 1.14982334998441 1326 0.726318937155074 4 3 1 -6.76619170997344 LTS-026 chr3 111694295 111844029 149735 * c(GCSAM, TAGLN3, TMPRSS7, ABHD10, MIR567, C3orf52, PHLDB2) 0.445253461134019 8 0.0389578526835641 1.3926726713121 358 0.344555379114243 6 3 3 -6.82911440958016 LTS-026 chr3 111844030 112303184 459155 * c(BTLA, GCSAM, SLC9C1, CD200, SLC35A5, ATG3, C3orf52) 0.392896746965759 22 0.0547525919052817 1.17992285926284 526 0.324729707338539 3 2 1 -6.79885797635743 LTS-026 chr3 112303185 112415652 112468 * c(CCDC80, SLC35A5) 0.338 1 NA 1.17541074012444 127 0.248104965923166 4 4 0 -5.76531175550665 LTS-026 chr3 112415653 113367859 952207 * c(MIR4446, CFAP44-AS1, CD200R1, SPICE1, USF3, NEPRO, GTPBP8, CD200R1L, SIDT1, CFAP44, BOC) 0.336245421730437 15 0.09738744418925 1.17829340180535 1033 0.345280073911715 4 3 1 -6.73831103859297 LTS-026 chr3 113367860 123650265 10282406 * c(LOC100129550, ZBTB20-AS1, IGSF11-AS1, MYLK-AS1, MIR4796, COX17, POLQ, PDIA5, ADCY5, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, DRD3, HACD2, TIGIT, USF3, ZDHHC23, GAP43, ZBTB20, FAM162A, SEC22A, GOLGB1, TUSC7, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, LSAMP, MIR198, MYLK, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, SEMA5B, WDR5B, PARP14, GRAMD1C, TMEM39A, NA NA NA NA NA NA NA NA NA LTS-026 EAF2, POGLUT1, ARHGAP31, CCDC191, POPDC2, CCDC14, SLC15A2, MIR568, UPK1B, ZNF80, HSPBAP1, QTRT2, NAA50, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.329134492726772 116 0.0927967855224433 1.11790969480461 7213 0.300612620008262 4 3 1 -7.14115088086997 LTS-026 NA NA NA NA LTS-026 chr3 123650266 123667524 17259 * CCDC14 0.365 1 NA 0.936192691382736 25 0.119226926488944 3 3 0 -5.76964505476422 LTS-026 chr3 123667525 123698903 31379 * c(ROPN1, CCDC14) 0.28 1 NA 0.949013226517874 117 0.252911255490046 3 3 0 -5.76590223887944 LTS-026 chr3 123698904 125692589 1993686 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.276548997197942 23 0.0408875832790734 0.998270267418377 1581 0.231381138378234 2 2 0 -7.43872420261456 LTS-026 chr3 125692590 141161766 15469177 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, NA NA NA NA NA NA NA NA NA LTS-026 KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, MCM2, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, HMCES, MRPS22, ISY1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, LOC653712, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, CNBP, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.259891749145159 217 0.0695658954360327 1.05207002887696 10792 0.263426857279196 3 3 0 -7.06105604343361 LTS-026 NA NA NA NA LTS-026 chr3 141161767 149088676 7926910 * c(LOC100289361, LOC100507389, HLTF-AS1, SLC9A9-AS1, TM4SF18, GRK7, CP, CPA3, CPB1, AGTR1, C3orf58, U2SURP, ZBTB38, GK5, PCOLCE2, SLC9A9, GYG1, PAQR9, PLSCR5, TM4SF1, ATP1B3, PLOD2, PLS1, PLSCR1, XRN1, ATR, PLSCR2, PLSCR4, RASA2, HLTF, TFDP2, TRPC1, ZIC1, ZIC4, HPS3, CHST2, RNF7) 0.250137872575239 58 0.0665034170303227 1.00780715407969 3710 0.294072354418656 3 3 0 -6.86392182999509 LTS-026 chr3 149088677 149220940 132264 * c(TM4SF1, TM4SF4) 0.297053166797423 3 0.0470779495447002 1.06847337588889 97 0.18648043587443 5 4 1 -6.89578146154348 LTS-026 chr3 149220941 149457043 236103 * c(WWTR1-AS1, WWTR1, COMMD2, TM4SF4) 0.431 1 NA 1.14345725289204 151 0.340739586723153 4 4 0 -5.76826713995054 LTS-026 chr3 149457044 159482678 10025635 * c(TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, MIR5186, KCNAB1-AS2, KCNAB1-AS1, RNF13, MED12L, CLRN1-AS1, AADAC, ERICH6, PQLC2L, C3orf79, DHX36, AADACP1, PLCH1, TIPARP, ARHGEF26, SERP1, IGSF10, C3orf33, GPR171, SCHIP1, LINC00880, AADACL2, GPR149, ANKUB1, LEKR1, MBNL1-AS1, MBNL1, MLF1, MME, P2RY1, COMMD2, RSRC1, SELENOT, PFN2, P2RY13, GPR87, SUCNR1, LXN, CCNL1, PTX3, NA NA NA NA NA NA NA NA NA LTS-026 RAP2B, RARRES1, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, IQCJ, SSR3, LINC00886, CLRN1, KCNAB1, VEPH1, EIF2A, GFM1, GMPS, SLC33A1, TSC22D2, P2RY14) 0.349829068262048 97 0.067091786195585 1.07921939451161 4656 0.296696390746375 3 2 1 -7.26848050125507 LTS-026 NA NA NA NA LTS-026 chr3 159482679 172737429 13254751 * c(LOC100128164, IQCJ-SCHIP1, SMC4, LOC101243545, PDCD10, OTOL1, PPM1L, WDR49, LRRC34, SPTSSB, ECT2, RPL22L1, MECOM, SLITRK3, TNIK, GHSR, GPR160, GOLIM4, TRIM59, SCHIP1, LRRIQ4, SAMD7, IL12A, KPNA4, TMEM212, C3orf80, MIR15B, MIR16-2, CLDN11, NMD3, SERPINI1, SERPINI2, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, IFT80, SLC7A14, BCHE, LINC01330, LINC01192, SI, FNDC3B, SKIL, SLC2A2, SCARNA7, MIR551B, MIR569, TERC, NA NA NA NA NA NA NA NA NA LTS-026 SEC62, ZBBX, LRRC31, PHC3, ARL14, SPATA16, ACTRT3, B3GALNT1, TNFSF10, EGFEM1P) 0.409395781608003 82 0.128055907976165 1.28398544794955 5009 0.367053320583321 4 2 2 -6.9527097345448 LTS-026 NA NA NA NA LTS-026 chr3 172737430 172766729 29300 * SPATA16 NA 0 NA 1.445 1 NA NA NA NA NA LTS-026 chr3 172766730 176737205 3970476 * c(MIR4789, NAALADL2-AS3, NLGN1, NAALADL2, SPATA16) 0.470407241277773 7 0.0189862105349169 1.47365304494516 373 0.58756811119407 6 3 3 -8.65948638594341 LTS-026 chr3 176737206 181431659 4694454 * c(LINC00578, LINC01014, KCNMB2, DNAJC19, TTC14, KCNMB3, CCDC39, SOX2-OT, NDUFB5, ZNF639, PEX5L, PIK3CA, MFN1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, FXR1, ACTL6A, USP13) 0.385684211210685 29 0.0959876839390361 1.13804064818637 2107 0.314993145183337 4 3 1 -6.95940535058765 LTS-026 chr3 181431660 181431683 24 * c(SOX2-OT, SOX2) NA 0 NA 1.017 1 NA NA NA NA NA LTS-026 chr3 181431684 189038858 7607175 * c(LOC100131635, MIR1224, LINC00888, ABCC5, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, RPL39L, AP2M1, CLCN2, FAM131A, RTP1, CRYGS, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, MCF2L2, ATP11B, VPS8, LOC253573, FETUB, LAMP3, HTR3E, C3orf70, TPRG1, HRG, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, SOX2-OT, KNG1, FLJ46066, FLJ42393, LPP, DNAJB11, DCUN1D1, POLR2H, KLHL24, TBCCD1, NA NA NA NA NA NA NA NA NA LTS-026 ABCF3, PARL, YEATS2, MASP1, MCCC1, PSMD2, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, ST6GAL1, SOX2, SST, SNORA81, SNORD66, THPO, MAP6D1, B3GNT5, CHRD, EIF2B5, KLHL6, VWA5B2, TMEM41A, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.342953742120398 126 0.0795889152368056 1.07854914491628 7040 0.315557794290864 3 2 1 -7.17098275708974 LTS-026 NA NA NA NA LTS-026 chr3 189038859 193272908 4234050 * c(MIR944, SNAR-I, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, TPRG1, OSTN, ATP13A5, IL1RAP, P3H2, HRASLS, GMNC, ATP13A4, MGC2889, TP63, CLDN1) 0.381155741210225 35 0.0561671724453368 1.17110411998616 1704 0.69131099730095 3 2 1 -6.90124607596595 LTS-026 chr3 193272909 193310897 37989 * character(0) NA 0 NA 1.066 1 NA NA NA NA NA LTS-026 chr3 193310898 195426484 2115587 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, MIR570, SDHAP2, ATP13A3, TMEM44) 0.372788829788659 28 0.0683325493567107 1.03659902045504 1430 0.248021037650493 3 2 1 -6.83303379389856 LTS-026 chr3 195426485 195447708 21224 * character(0) NA 0 NA 1.736 1 NA NA NA NA NA LTS-026 chr3 195447709 195476016 28308 * c(MUC20, MUC4) 0.385285149835381 17 0.11302316264429 1.73890479448119 110 0.943615472645954 11 7 4 -6.73583729679036 LTS-026 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.962 1 NA NA NA NA NA LTS-026 chr3 195477782 195690251 212470 * c(TNK2, SDHAP1, MUC4) 0.337216282206216 28 0.0537871933578261 1.12486969043842 368 0.345543535267032 4 3 1 -6.7431042034734 LTS-026 chr3 195690252 195690301 50 * SDHAP1 NA 0 NA 0.453 1 NA NA NA NA NA LTS-026 chr3 195690302 197769542 2079241 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.374524498002847 48 0.111006804468455 0.911830255831836 2817 0.218849959439102 3 2 1 -7.07041004729565 LTS-026 chr3 197769543 197770512 970 * LMLN NA 0 NA 0.993964846302471 23 0.203674855198957 3 NA NA -5.76441884493893 LTS-026 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.228 1 NA 0.754218722045257 13 0.138227237658752 2 2 0 -5.76639370816979 LTS-026 chr4 60336 926264 865929 * c(LOC100129917, PCGF3, CPLX1, ZNF595, ZNF721, ZNF718, GAK, MYL5, PDE6B, ATP5I, PIGG, ZNF876P, ZNF732, ZNF141, ABCA11P, MFSD7, TMEM175) 0.350172483900939 33 0.0471736596700602 0.649934278689483 1052 0.179143348182532 1 1 0 -6.73867530508132 LTS-026 chr4 926265 941420 15156 * TMEM175 NA 0 NA 0.885 1 NA NA NA NA NA LTS-026 chr4 941421 994356 52936 * c(SLC26A1, DGKQ, IDUA, TMEM175) 0.363080767984474 9 0.0352955773118641 0.738001491864244 329 0.144159113508004 1 1 0 -6.84914229637669 LTS-026 chr4 994357 994452 96 * IDUA 0.322 1 NA 0.902108070069347 3 0.455529362390615 2 2 0 -5.76441212474941 LTS-026 chr4 994453 1400019 405567 * c(LOC100130872, TMED11P, MAEA, SPON2, CTBP1, CRIPAK, RNF212, IDUA, FGFRL1, UVSSA, CTBP1-AS2) 0.256409840339116 36 0.050797723671034 0.781845893046045 800 0.20261763886252 2 2 0 -6.79567738258239 LTS-026 chr4 1400020 3225858 1825839 * c(MIR943, MIR4800, HTT-AS, MFSD10, TACC3, MXD4, ADD1, FAM53A, FGFR3, GRK4, HTT, NOP14-AS1, NAT8L, POLN, LETM1, C4orf48, CFAP99, ZFYVE28, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, NOP14, FAM193A, TMEM129) 0.240271074315299 69 0.0550156685423911 0.934292227532036 3058 0.224899110953682 3 3 0 -6.97581622066477 LTS-026 chr4 3225859 3227358 1500 * HTT NA 0 NA 0.973 1 NA NA NA NA NA LTS-026 chr4 3227359 15003935 11776577 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, MIR5091, LINC01587, MRFAP1L1, CLNK, EVC2, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, BOD1L1, NSG1, GPR78, LOC285484, DOK7, LINC00955, LINC01097, LINC01096, HTT, HGFAC, HMX1, MSANTD1, FAM86EP, USP17L6P, NA NA NA NA NA NA NA NA NA LTS-026 USP17L9P, LRPAP1, CPEB2-AS1, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, NKX3-2, RGS12, AFAP1, S100P, DEFB131, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, KIAA0232, WDR1, HS3ST1) 0.256033173144304 164 0.0698309431161401 1.00234877339467 5646 0.276999320098986 3 3 0 -6.91733989990559 LTS-026 NA NA NA NA LTS-026 chr4 15003936 15004291 356 * character(0) NA 0 NA 0.773 1 NA NA NA NA NA LTS-026 chr4 15004292 36310021 21305730 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, ARAP2, CPEB2, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FBXL5, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, DTHD1, MIR218-1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, NA NA NA NA NA NA NA NA NA LTS-026 SLIT2, CD38, FGFBP1) 0.245174955789737 76 0.0721647177728013 0.867479824555028 5056 0.317589182296546 2 2 0 -7.05994841885688 LTS-026 NA NA NA NA LTS-026 chr4 36310022 40810750 4500729 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.276390282744131 54 0.0500511687861067 0.758239697714542 2812 0.204701996088157 2 2 0 -7.21038695372419 LTS-026 chr4 40810751 49063872 8253122 * c(UCHL1-AS1, ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, APBB2, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, UCHL1, NSUN7, CWH43, PHOX2B) 0.260358621599788 95 0.057003296500028 0.819111637501562 4412 0.833834911255868 2 2 0 -6.75116183144663 LTS-026 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.765427698179266 5 0.0124217551094844 2 NA NA -5.7701097798579 LTS-026 chr4 52709193 52714511 5319 * DCUN1D4 0.241 1 NA 0.878955567854995 17 0.239312295964917 2 2 0 -5.76460484112853 LTS-026 chr4 52714512 56238886 3524375 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.267346243077741 53 0.0563606209477321 0.842029332139947 1699 0.248601764874694 2 2 0 -6.74334906778758 LTS-026 chr4 56238887 57897133 1658247 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.2721267167727 37 0.0548803503346403 0.757194405630306 1590 0.200209152188087 2 2 0 -6.92850311517175 LTS-026 chr4 57897134 68906584 11009451 * c(EPHA5-AS1, CENPC, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, LOC401134, POLR2B, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.255105122492846 36 0.0498759095075604 0.921858178513503 1343 0.263938119695012 2 2 0 -7.70947476623428 LTS-026 chr4 68906585 68907458 874 * UBA6-AS1 NA 0 NA 0.28205967517311 41 0.230536979203962 0 NA NA -5.76650677065963 LTS-026 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.804 1 NA NA NA NA NA LTS-026 chr4 68907461 69363240 455780 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.227627895798061 10 0.083005019928516 0.932085108275907 404 0.250293962248432 3 3 0 -6.77321132316483 LTS-026 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.0831121700747038 39 0.183477728684102 0 NA NA -8.12485354055673 LTS-026 chr4 69434317 69512310 77994 * character(0) NA 0 NA 2.392 1 NA NA NA NA NA LTS-026 chr4 69512311 74302870 4790560 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, UGT2A1, CSN1S1, CSN2, CSN3, DCK, AFP, ALB, RUFY3, AMBN, FDCSP, ANKRD17, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, GRSF1, HTN1, HTN3, JCHAIN, PRR27, AMTN, MUC7, UGT2B28, ODAM, UTP3, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.257144738980621 39 0.0618006786907691 0.919417506036469 2608 0.24866357019048 2 2 0 -7.2248375768171 LTS-026 chr4 74302871 74439158 136288 * c(RASSF6, AFM, AFP, LOC728040) 0 1 NA 0.955299165543007 157 0.267245418578933 3 3 0 -5.76918540500904 LTS-026 chr4 74439159 80954739 6515581 * c(FAM47E, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, CXCL13, PPBPP2, CCNI, PCAT4, ANTXR2, PAQR3, THAP6, C4orf26, RASSF6, EREG, CNOT6L, EPGN, PARM1, RCHY1, GK2, NAAA, CXCL1, CXCL2, CXCL3, ANXA3, CCDC158, SOWAHB, CXCL8, CXCL10, AREG, ART3, CXCL9, MTHFD2L, LOC441025, PF4, PF4V1, NUP54, PPEF2, PPBP, SDAD1, BMP2K, SEPT11, SHROOM3, CXCL6, CXCL11, CXCL5, MRPL1, BTC, FRAS1, NAA11, USO1, STBD1, NA NA NA NA NA NA NA NA NA LTS-026 CDKL2, CCNG2, SCARB2, G3BP2) 0.224788954941504 88 0.0662375123776325 0.916641481991676 4632 0.261768434051267 3 3 0 -7.31686689273334 LTS-026 NA NA NA NA LTS-026 chr4 80954740 80957071 2332 * ANTXR2 NA 0 NA 0.829 1 NA NA NA NA NA LTS-026 chr4 80957072 84390392 3433321 * c(THAP9-AS1, HPSE, HELQ, ANTXR2, LIN54, RASGEF1B, FGF5, SEC31A, C4orf22, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, HNRNPDL) 0.232263925919709 37 0.0781919079858937 0.847799096174507 1875 0.22451376490592 2 2 0 -6.89139275065146 LTS-026 chr4 84390393 84391266 874 * FAM175A NA 0 NA 0.98 1 NA NA NA NA NA LTS-026 chr4 84391267 86749173 2357907 * c(MIR4451, CDS1, WDFY3, WDFY3-AS2, NKX6-1, ARHGAP24, FAM175A, GPAT3) 0.232080736386899 2 0.0233345237791561 0.951337959420911 780 0.295717864684508 3 3 0 -6.97614846418749 LTS-026 chr4 86749174 87028549 279376 * c(MAPK10, ARHGAP24) 0.186 1 NA 1.19272246186912 214 0.264804668296023 4 4 0 -5.76488265984379 LTS-026 chr4 87028550 87080374 51825 * MAPK10 NA 0 NA 0.915 1 NA NA NA NA NA LTS-026 chr4 87080375 89199769 2119395 * c(LOC100506746, MIR5705, C4orf36, PPM1K, DMP1, DSPP, IBSP, SLC10A6, HSD17B13, AFF1, HSD17B11, PKD2, NUDT9, MAPK10, MEPE, KLHL8, PTPN13, SPP1, SPARCL1, ABCG2) 0.211011703194456 45 0.0518081932602256 0.957907673006424 1671 0.291026659360693 3 3 0 -6.80632159577029 LTS-026 chr4 89199770 89199858 89 * PPM1K NA 0 NA 1.002 1 NA NA NA NA NA LTS-026 chr4 89199859 92522404 3322546 * c(PYURF, FAM13A, PPM1K, TIGD2, MMRN1, NAP1L5, FAM13A-AS1, GPRIN3, CCSER1, HERC5, HERC6, SNCA-AS1, SNCA, HERC3) 0.186761997333586 31 0.06845571521967 1.08699450994075 1347 1.21718345837229 4 4 0 -6.74876129019613 LTS-026 chr4 92522405 92522409 5 * CCSER1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-026 chr4 92522410 99798632 7276223 * c(TSPAN5, STPG2-AS1, PDLIM5, HPGDS, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, RAP1GDS1, BMPR1B, UNC5C) 0.225067026575948 43 0.0716627313555502 0.953416265992448 1490 0.324595260533218 3 3 0 -6.91482784673948 LTS-026 chr4 99798633 99799310 678 * character(0) 0.257 1 NA 1.2878789427184 17 6.37183219333341 4 4 0 -5.76441017398116 LTS-026 chr4 99799311 99851716 52406 * EIF4E 0.252978570514068 3 0.0342101349505279 0.937240562072494 121 0.197488220173858 2 2 0 -6.89067245996963 LTS-026 chr4 99851717 126320123 26468407 * c(SNHG8, PP12613, MIR1243, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, SPRY1, SEC24B, CENPE, RRH, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, TMEM155, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SPATA5, BBS12, SGMS2, SYNPO2, EGF, EIF4E, ENPEP, FABP2, FGF2, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, LINC01091, RPL34-AS1, ANK2, H2AFZ, HADH, NA NA NA NA NA NA NA NA NA LTS-026 ANXA5, CFI, LRIT3, IL2, PCNAP1, LINC01061, C4orf3, MAD2L1, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, USP53, TET2, ARHGEF38, MCUB, BANK1, BBS7, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, ANKRD50, METTL14, OSTC, IL21, RPL34, NEUROG2, SLC39A8, LEF1-AS1, CEP170P1, LOC645513, NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UGT8, ELOVL6, NDNF, FAT4, ARSJ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 GSTCD, TNIP3, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, PRSS12, LAMTOR3, PDE5A, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.271828059675651 234 0.0608494779217886 0.804296633106814 11481 0.244827586854293 2 2 0 -6.95786504041276 LTS-026 NA NA NA NA LTS-026 chr4 126320124 126328024 7901 * FAT4 NA 0 NA 0.675 1 NA NA NA NA NA LTS-026 chr4 126328025 133357131 7029107 * c(MIR2054, PGRMC2, PLK4, SCLT1, C4orf33, HSPA4L, MFSD8, INTU, LARP1B, FAT4, JADE1, ABHD18, SLC25A31) 0.354266076813231 16 0.0551289019783029 0.631960611615895 1561 0.150748889862851 1 1 0 -6.75341814850431 LTS-026 chr4 133357132 133367527 10396 * character(0) NA 0 NA 0.996 1 NA NA NA NA NA LTS-026 chr4 133367528 141463870 8096343 * c(SCOC-AS1, LINC00499, CLGN, PABPC4L, MGAT4D, ELF2, SLC7A11, ELMOD2, NOCT, MGST2, NDUFC1, PCDH18, MAML3, PCDH10, SCOC, SLC7A11-AS1, LINC00616, NAA15, SETD7, RAB33B, MGARP) 0.24840770943558 12 0.0357283522082274 0.843168922965954 1593 0.192276527897475 2 2 0 -6.9852254718011 LTS-026 chr4 141463871 141464570 700 * ELMOD2 NA 0 NA 0.98 1 NA NA NA NA NA LTS-026 chr4 141464571 146057606 4593036 * c(ANAPC10, FREM3, TBC1D9, GAB1, ELMOD2, ZNF330, GYPA, GYPB, GYPE, IL15, GUSBP5, OTUD4, RNF150, ABCE1, HHIP, TNRC18P1, HHIP-AS1, UCP1, USP38, SMARCA5, INPP4B) 0.243313763672817 39 0.0529974154641898 0.89859307195204 2169 0.254689462515073 2 2 0 -7.1495923693758 LTS-026 chr4 146057607 146073850 16244 * OTUD4 0.393 1 NA 0.968849362982379 93 0.186347088145756 3 3 0 -5.76512642273852 LTS-026 chr4 146073851 146095952 22102 * OTUD4 NA 0 NA 0.99100691325488 63 0.154108462878497 3 NA NA -5.76484504351926 LTS-026 chr4 146095953 146100941 4989 * OTUD4 NA 0 NA 0.58 1 NA NA NA NA NA LTS-026 chr4 146100942 155155645 9054704 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, DKFZP434I0714, POU4F2, DCHS2, FBXW7, TMEM184C, RPS3A, SFRP2, C4orf51, TLR2, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.347421327407404 61 0.0867851407542657 0.614640198327077 3519 0.171509060470013 1 1 0 -6.97895469753559 LTS-026 chr4 155155646 184241686 29086041 * c(MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, CTSO, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, RBM46, AGA, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, ANP32C, FBXO8, GK3P, GLRB, GPM6A, LINC01098, GRIA2, GUCY1A3, GUCY1B3, HMGB2, HPGD, LOC340017, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NPY2R, NPY5R, NA NA NA NA NA NA NA NA NA LTS-026 SPOCK3, AADAT, FAM198B, ASIC5, GALNT7, PLRG1, CLDN22, DCHS2, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, DDX60, TENM3, PDGFC, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TDO2, TLL1, LINC00290, VEGFC, HAND2-AS1, MAP9, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, LRAT, NAF1, HAND2, RAPGEF2, MFAP3L) 0.343833935202661 132 0.0869492208915522 0.647246319948584 8188 0.278973533736067 1 1 0 -6.78246280427684 LTS-026 NA NA NA NA LTS-026 chr4 184241687 184241785 99 * c(CLDN22, WWC2) NA 0 NA 0.591 1 NA NA NA NA NA LTS-026 chr4 184241786 187003643 2761858 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, TLR3, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.367308035731062 54 0.0850236782081599 0.602353484721369 2038 0.182656216254147 1 1 0 -6.91776537363453 LTS-026 chr4 187003644 190981533 3977890 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3) 0.313464255949523 27 0.100719349999826 0.684705665301418 1133 0.246475449132686 1 1 0 -7.00050354527584 LTS-026 chr4 190981534 190981567 34 * character(0) NA 0 NA 0.692111573374845 3 0.256343519520194 1 NA NA -5.76441213579416 LTS-026 chr5 140347 163266 22920 * PLEKHG4B 0.275 1 NA 0.777849801140269 69 0.174162135021831 2 2 0 -5.76621375777864 LTS-026 chr5 163267 32109159 31945893 * c(SNORD123, LOC100130744, PDCD6, CDH6, MIR4279, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, CDH9, CDH10, LOC100996325, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, PAPD7, TPPP, EXOC3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, PLEKHG4B, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, PDZD2, FBXL7, ICE1, LINC01018, NA NA NA NA NA NA NA NA NA LTS-026 PP7080, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, SLC6A18, LRRC14B, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, PMCHL1, FAM134B, FAM105A, NSUN2, C5orf22, CEP72, ANKH, PRDM9, AHRR, SDHA, LINC01021, MRPL36, ANKRD33B, SLC6A3, SLC9A3, BRD9, SRD5A1, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.248988352873593 209 0.0693520706121781 0.898242232463715 8142 0.272195076629571 2 2 0 -8.12815667130341 LTS-026 NA NA NA NA LTS-026 chr5 32109160 44809162 12700003 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MRPS30, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, FGF10, PDZD2, NNT, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, HMGCS1, LOC340113, PLCXD3, IL7R, C5orf34, ANXA2R, LIFR, NPR3, OXCT1, SLC45A2, RXFP3, NA NA NA NA NA NA NA NA NA LTS-026 ZFR, MTMR12, WDR70, BRIX1, PRKAA1, PRLR, CCL28, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, TMEM267, NIPBL-AS1, LOC648987, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, C6, C7, C9, ZNF131, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.279038714262908 130 0.05086627269882 0.793642515043123 8209 0.203995776794129 2 2 0 -7.07237629916946 LTS-026 NA NA NA NA LTS-026 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.903259147651073 150 0.21538581261867 2 NA NA -5.84884459918333 LTS-026 chr5 49692017 50045967 353951 * c(EMB, PARP8) 0.371 1 NA 0.77430087686231 121 0.205717024276395 2 2 0 -5.78729341711211 LTS-026 chr5 50045968 64814138 14768171 * c(LRRC70, FAM159B, MIR449C, MIR5687, IPO11-LRRC70, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, KIF2A, RGS7BP, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, NA NA NA NA NA NA NA NA NA LTS-026 ZSWIM6, CENPK, LOC642366, SMIM15, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.27930656662702 119 0.0530008787580362 0.762633131589294 5626 0.206384946654789 2 2 0 -7.91910254414912 LTS-026 NA NA NA NA LTS-026 chr5 64814139 64814228 90 * CENPK NA 0 NA 0.576 1 NA NA NA NA NA LTS-026 chr5 64814229 68862353 4048125 * c(LOC100303749, OCLN, CDK7, SREK1, MARVELD2, CCDC125, PPWD1, TRIM23, MAST4, CD180, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, GTF2H2C, TRAPPC13, CCNB1, MRPS36) 0.298052331279755 50 0.072142251765494 0.706825851820869 2540 0.212338498603662 1 1 0 -7.54557058874294 LTS-026 chr5 68862354 69373289 510936 * c(NA, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.08226801001927 39 0.316020981042144 3 NA NA -5.7755075990293 LTS-026 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.001 1 NA NA NA NA NA LTS-026 chr5 69717474 70308346 590873 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.366506292345501 50 0.222224802524702 0 NA NA -6.03711261158368 LTS-026 chr5 70308347 70388996 80650 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.250366788572854 39 0.210271468388732 0 NA NA -6.11225014285163 LTS-026 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.531 1 NA NA NA NA NA LTS-026 chr5 70751404 93855402 23103999 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, NA NA NA NA NA NA NA NA NA LTS-026 SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.283367672033225 161 0.0768882224905998 0.734936355959615 10173 0.401656928885832 2 2 0 -7.78458317615584 LTS-026 NA NA NA NA LTS-026 chr5 93855403 96367779 2512377 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.303885753175457 75 0.0601784134174493 0.680771632087384 2227 0.168836603738369 1 1 0 -7.27866851915747 LTS-026 chr5 96367780 96371042 3263 * character(0) 0.362 1 NA 0.972392456109083 67 0.214037219316704 3 3 0 -5.76450399392488 LTS-026 chr5 96371043 118437748 22066706 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, DTWD2, RGMB, APC, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, NA NA NA NA NA NA NA NA NA LTS-026 SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.304164832725522 86 0.0508093187053818 0.734642673006336 6040 0.214203579178425 2 2 0 -9.60683607116676 LTS-026 NA NA NA NA LTS-026 chr5 118437749 118440836 3088 * DMXL1 NA 0 NA 0.971 1 NA NA NA NA NA LTS-026 chr5 118440837 121488506 3047670 * c(ZNF474, SRFBP1, DMXL1, TNFAIP8, HSD17B4, FAM170A, LOX, PRR16, FTMT) 0.290425583492669 16 0.046472169090758 0.806357916560819 866 0.246609477128328 2 2 0 -6.86845694449255 LTS-026 chr5 121488507 121489122 616 * ZNF474 0.223 1 NA 0.77094872769826 13 0.0934367330171762 2 2 0 -5.76462920596883 LTS-026 chr5 121489123 126187579 4698457 * c(LOC100505841, ZNF474, CSNK1G3, MGC32805, CEP120, SNX24, TEX43, LMNB1, ALDH7A1, PHAX, PPIC, ZNF608, GRAMD3, SNX2, PRDM6, SNCAIP) 0.252471091055638 18 0.0709229536855109 0.809309801782569 1344 0.246766623877516 2 2 0 -6.79488483878474 LTS-026 chr5 126187580 129522229 3334650 * c(KIAA1024L, MIR4633, MIR4460, MARCH3, PRRC1, ADAMTS19, FBN2, SLC27A6, CHSY3, C5orf63, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.259348769213296 28 0.0461025283655151 0.877624409109114 1574 0.229560480764698 2 2 0 -6.88843853953994 LTS-026 chr5 129522230 131593623 2071394 * c(CSF2, ACSL6, HINT1, CHSY3, IL3, RAPGEF6, CDC42SE2, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.253059089462199 21 0.0702751734256131 0.782232464754972 1081 0.544732243673058 2 2 0 -6.78160084071712 LTS-026 chr5 131593624 131598254 4631 * PDLIM4 NA 0 NA 1.077 1 NA NA NA NA NA LTS-026 chr5 131598255 134331918 2733664 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, FSTL4, SEPT8, JADE2, GDF9, UQCRQ, AFF4, HSPA4, CATSPER3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, ZCCHC10, PPP2CA, LOC553103, C5orf15, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, CDKN2AIPNL, DDX46) 0.21378483253572 24 0.068699606036463 0.859742666682782 3406 0.195017609288147 2 2 0 -7.16890049007626 LTS-026 chr5 134331919 134331921 3 * CATSPER3 0.149 1 NA 2.826 1 NA NA NA NA NA LTS-026 chr5 134331922 135701113 1369192 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.226779851285409 27 0.0454966264677176 0.981113734770479 985 0.345411172210497 3 3 0 -6.7579385523212 LTS-026 chr5 135701114 136314075 612962 * c(TRPC7, SPOCK1) 0.311 1 NA 0.96891493663876 73 0.466492998506957 3 3 0 -5.76870931410653 LTS-026 chr5 136314076 139919066 3604991 * c(MIR874, LINC01024, KIF20A, BRD8, HNRNPA0, CTNNA1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, TMEM173, PROB1, ANKHD1-EIF4EBP3, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, ANKHD1, PURA, ECSCR, SIL1, SPOCK1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, CDC23, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.319407733636833 39 0.0656820440012606 1.00403635215413 3652 0.231640726121705 3 2 1 -7.53239172745805 LTS-026 chr5 139919067 139919129 63 * c(ANKHD1-EIF4EBP3, ANKHD1) NA 0 NA 1.503 1 NA NA NA NA NA LTS-026 chr5 139919130 140553623 634494 * c(SRA1, APBB3, SLC35A4, ZMAT2, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, EIF4EBP3, CD14, PCDHA9) 0.310571117998981 47 0.069238664050117 1.14824733547968 1938 0.24210570508683 4 3 1 -6.8705894457664 LTS-026 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.389 1 NA NA NA NA NA LTS-026 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.279806393842045 2 0.015556349186104 0.462570983294067 63 0.620792265881585 9 7 2 -6.74858795262246 LTS-026 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.086 1 NA NA NA NA NA LTS-026 chr5 140559822 153429208 12869387 * c(GNPDA1, LOC100505658, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, FAM114A2, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, SLC36A1, FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, PCDHGA12, CCDC69, IL17B, GLRA1, GM2A, RELL2, SLC36A3, GPX3, GRIA1, NA NA NA NA NA NA NA NA NA LTS-026 NR3C1, ANXA6, NDST1, HTR4, ARSI, IRGM, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, MFAP3, ATOX1, PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 PCDHB10, PCDHB8, NMUR2, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPARC, SPINK1, TAF7, TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.286216734453612 259 0.0590157518684898 1.15285287499032 11629 0.559408339186417 4 3 1 -7.28023494167504 LTS-026 NA NA NA NA LTS-026 chr5 153429209 153788991 359783 * c(SAP30L-AS1, MFAP3, GALNT10) 0.30273409728953 2 0.0417193000900063 1.26052409317972 204 0.329230058574759 5 4 1 -6.7714247928129 LTS-026 chr5 153788992 153797049 8058 * c(SAP30L-AS1, GALNT10) 0.489 1 NA 1.11720811008524 37 0.321485013825083 4 4 0 -5.76470548736797 LTS-026 chr5 153797050 155756630 1959581 * c(MIR3141, FAXDC2, LARP1, GEMIN5, KIF4B, MRPL22, SAP30L-AS1, GALNT10, SGCD, SAP30L, CNOT8, HAND1) 0.326608195678472 6 0.0305853995668958 1.25710205132548 858 0.248575695515707 4 3 1 -6.90651681655183 LTS-026 chr5 155756631 159992554 4235924 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, FABP6, ATP10B, HAVCR1, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, SGCD, TTC1, CCNJL, HAVCR2, ADAM19, TIMD4, PTTG1, MED7, CLINT1) 0.439534682625672 15 0.0466090120041178 1.11708328789346 2659 0.246713927364422 4 2 2 -7.00798301192932 LTS-026 chr5 159992555 172198233 12205679 * c(FAM196B, MIR103B1, MIR3912, MIR378E, C5orf58, NUDCD2, DOCK2, DUSP1, FOXI1, ATP10B, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, EFCAB9, SH3PXD2B, LOC285629, TLX3, KCNIP1, HMMR, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, NPM1, NEURL1B, SPDL1, TENM2, RARS, RANBP17, SLIT3, STK10, MIR585, PANK3, FGF18, CCNG1, UBTD2) 0.36873429397845 84 0.0910087252221012 1.31549307799149 4046 0.411401396876914 5 3 2 -7.06390073719517 LTS-026 chr5 172198234 175774201 3575968 * c(LOC100268168, LOC100507387, MIR4634, CPLX2, C5orf47, NKX2-5, CREBRF, DRD1, FAM153B, LOC285593, HRH2, SIMC1, FLJ16171, MSX2, RPL26L1, HMP19, KIAA1191, ERGIC1, LOC643201, BNIP1, SNORA74B, CPEB4, THOC3, STC2, ATP6V0E1, BOD1, SFXN1) 0.36446175999031 22 0.0663003137378067 1.41445008739392 1716 0.377758893647119 6 4 2 -6.95710458222586 LTS-026 chr5 175774202 180374817 4600616 * c(MIR1229, MIR4281, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, NHP2, RNF130, NA NA NA NA NA NA NA NA NA LTS-026 MAPK9, PROP1, KIAA1191, CLK4, CNOT6, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.400217623583836 165 0.088715322800689 1.23648795001443 6799 0.374971387895038 4 2 2 -6.81244780749698 LTS-026 NA NA NA NA LTS-026 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.238 1 NA NA NA NA NA LTS-026 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) 0.373315327800215 4 0.0170758113521242 2.29096426697074 66 0.626640694050873 14 9 5 -6.74895894392618 LTS-026 chr5 180429800 180671029 241230 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM41) 0.344548120283799 33 0.0834816710059124 1.1138255793235 517 0.262894717268557 4 3 1 -6.7478761042048 LTS-026 chr5 180671030 180688111 17082 * TRIM52 NA 0 NA 1.13011807870534 54 0.215054710020234 4 NA NA -5.76543391899165 LTS-026 chr6 203389 335069 131681 * DUSP22 0.25 1 NA 0.958348989880372 29 0.375910267958525 3 3 0 -5.76651858163549 LTS-026 chr6 335070 7329560 6994491 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, FARS2, RPP40, HUS1B, LINC01600, SERPINB1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, PPP1R3G, BPHL, SSR1, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL, LY86) 0.444198094144698 192 0.0547261297745849 1.06983622795201 3266 0.331737641612365 3 2 1 -7.18897082949466 LTS-026 chr6 7329561 7329960 400 * CAGE1 NA 0 NA 1.444 1 NA NA NA NA NA LTS-026 chr6 7329961 13053760 5723800 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100506207, ELOVL2-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR5689, SNRNP48, DSP, EDN1, PIP5K1P1, PHACTR1, SMIM13, SYCP2L, LINC00518, GCNT2, CAGE1, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, SLC35B3, TMEM14C, ELOVL2, PAK1IP1, BLOC1S5, BMP6, TFAP2A, HULC, TXNDC5, TMEM14B, RIOK1, ADTRP, GCM2, EEF1E1) 0.436746422613122 43 0.0439829827154694 1.18950318174466 2927 0.306161982345781 4 2 2 -6.75467507477132 LTS-026 chr6 13053761 24658114 11604354 * c(LOC100130357, RANBP9, MIR4639, CAP2, NRSN1, MBOAT1, HDGFL1, E2F3, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, GPLD1, MYLIP, ID4, KAAG1, JARID2, NHLRC1, STMND1, CASC15, TBC1D7, NOL7, FAM8A1, DCDC2, TDP2, GFOD1, CDKAL1, PRL, MRS2, ATXN1, MCUR1, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, DTNBP1, CD83, KIAA0319, NUP153) 0.421115977277725 111 0.108364099455392 1.059980708125 4073 0.362959550820175 3 2 1 -6.83646124890045 LTS-026 chr6 24658115 25529232 871118 * c(GMNN, TDP2, CARMIL1, ACOT13, C6orf62, CMAHP, FAM65B) 0.408822101508028 6 0.0708989891794422 0.926588643050757 605 0.240996933765094 3 2 1 -6.82254444833838 LTS-026 chr6 25529233 25538073 8841 * CARMIL1 NA 0 NA 1.137 1 NA NA NA NA NA LTS-026 chr6 25538074 25916979 378906 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, CARMIL1, SLC17A1) 0.472528298638434 21 0.0237303302005803 1.05930426371042 427 0.332513616377375 4 2 2 -8.21960016495467 LTS-026 chr6 25916980 26027135 110156 * c(SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B) 0.456 1 NA 1.0186418722881 147 0.156235773744312 3 3 0 -5.76441058093859 LTS-026 chr6 26027136 26598188 571053 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HFE, HCG11, BTN2A3P, BTN1A1, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.461750657274956 28 0.0472389512851261 1.0009970313382 1096 0.212767765723853 2 1 1 -7.24109063487144 LTS-026 chr6 26598189 26637796 39608 * c(ABT1, ZNF322) 0.097 1 NA 1.22560291910258 69 0.648116137843359 4 4 0 -5.76441989438226 LTS-026 chr6 26637797 29759811 3122015 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-026 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.463447579037039 92 0.0325227620683751 1.04172109361739 2837 0.264520918081161 4 2 2 -7.83241421590023 LTS-026 NA NA NA NA LTS-026 chr6 29759812 29759823 12 * character(0) 0.172 1 NA 1.052 1 NA NA NA NA NA LTS-026 chr6 29759824 29913468 153645 * character(0) 0.379420895386513 78 0.0954248165017654 1.02963289276695 204 1.71278357695126 6 4 2 -6.73918361478426 LTS-026 chr6 29913469 29976262 62794 * character(0) 0.461 1 NA 0.930861787526267 15 0.09039500618318 3 3 0 -5.80195486256373 LTS-026 chr6 29976263 31322996 1346734 * character(0) 0.458068372105445 177 0.0437238152619146 1.0035377038831 3233 0.557006830977467 4 2 2 -7.04906565752966 LTS-026 chr6 31322997 31323067 71 * character(0) 0.227 1 NA 1.07213453834757 3 0.130691749293264 3 3 0 -5.76441647419507 LTS-026 chr6 31323068 31324856 1789 * character(0) 0.323860673716785 6 0.112129686821406 0.978872881706901 30 0.214394793747905 4 3 1 -6.74947671743914 LTS-026 chr6 31324857 31324887 31 * character(0) 0.075 1 NA 0.619 1 NA NA NA NA NA LTS-026 chr6 31324888 31324931 44 * character(0) 0.330452809886575 4 0.0677120127205407 0.588064099400395 4 0.0199728983041187 1 1 0 -6.78201578912549 LTS-026 chr6 31324932 31324953 22 * character(0) 0.387 1 NA 0.558 1 NA NA NA NA NA LTS-026 chr6 31324954 31431879 106926 * character(0) 0.393 1 NA 0.534031646994931 52 0.138636867374718 0 0 0 -5.86722912186507 LTS-026 chr6 31431880 31465812 33933 * character(0) NA 0 NA 0.897 1 NA NA NA NA NA LTS-026 chr6 31465813 32370835 905023 * character(0) 0.454533533292909 147 0.0385736210147353 1.00801628664795 4480 0.241502591438045 4 2 2 -7.24852547734331 LTS-026 chr6 32370836 32412858 42023 * character(0) NA 0 NA 1.01693899179682 57 0.188225640134414 3 NA NA -5.76441321089777 LTS-026 chr6 32412859 32412861 3 * character(0) NA 0 NA 1.433 1 NA NA NA NA NA LTS-026 chr6 32412862 32485464 72603 * HLA-DRB5 0.216 1 NA 1.31943771235465 11 0.252712880558154 5 5 0 -5.7668146265823 LTS-026 chr6 32485465 32498015 12551 * HLA-DRB5 0.338320848045112 28 0.104339444011934 1.60775134904391 62 2.15556397467482 7 5 2 -6.73307126849392 LTS-026 chr6 32498016 32498029 14 * HLA-DRB5 NA 0 NA 0.87 1 NA NA NA NA NA LTS-026 chr6 32498030 32498033 4 * HLA-DRB5 0.337 1 NA 0.646 1 NA NA NA NA NA LTS-026 chr6 32498034 32546761 48728 * HLA-DRB5 0.173 1 NA 0.532034195807941 13 0.338756265908555 0 0 0 -5.77204977353777 LTS-026 chr6 32546762 32548085 1324 * HLA-DRB5 0.14586468545125 9 0.0923945344703895 1.06758310012803 21 1.88673050539816 19 17 2 -6.73401007363236 LTS-026 chr6 32548086 32548115 30 * HLA-DRB5 0.402 1 NA 1.246 1 NA NA NA NA NA LTS-026 chr6 32548116 32548666 551 * HLA-DRB5 0.358586683577941 2 0.0268700576850888 0.68574012972924 8 0.22027580114808 12 8 4 -6.7464948422984 LTS-026 chr6 32548667 32548674 8 * HLA-DRB5 0.296 1 NA 1.008 1 NA NA NA NA NA LTS-026 chr6 32548675 32557616 8942 * HLA-DRB5 0.303738538355006 46 0.103371792749434 1.27461747775065 83 0.545143203706835 5 4 1 -6.73671849708094 LTS-026 chr6 32557617 32605178 47562 * character(0) 0.489 1 NA 0.986538713435716 3 0.32240554172243 3 3 0 -5.76469883133617 LTS-026 chr6 32605179 32605326 148 * HLA-DQA1 0.485118458488477 3 0.00945163125250523 0.953132799568802 7 0.172723009744614 0 0 0 -12.8294735274841 LTS-026 chr6 32605327 32605417 91 * HLA-DQA1 NA 0 NA 0.676 1 NA NA NA NA NA LTS-026 chr6 32605418 32627536 22119 * HLA-DQA1 0.39577885458486 8 0.117887355434875 0.415872493790811 95 0.523048794933416 3 2 1 -6.77253074798884 LTS-026 chr6 32627537 33035512 407976 * character(0) 0.407371563165343 73 0.0987450536302369 0.969917807319085 891 0.506180127194582 3 2 1 -6.73866021502521 LTS-026 chr6 33035513 33055035 19523 * character(0) 0.400281219689461 41 0.0421405314423525 1.89325329557592 169 20.7111153228461 3 2 1 -6.73305848249505 LTS-026 chr6 33055036 33080197 25162 * character(0) NA 0 NA 1.072 1 NA NA NA NA NA LTS-026 chr6 33080198 37599840 4519643 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, NA NA NA NA NA NA NA NA NA LTS-026 UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.453646237211437 114 0.081648219133219 1.010348288657 6753 0.398939956658973 3 2 1 -6.98229663542143 LTS-026 NA NA NA NA LTS-026 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.485 1 NA NA NA NA NA LTS-026 chr6 37599845 41658558 4058714 * c(LOC100131047, MIR4641, APOBEC2, BTBD9, FOXP4, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, MDGA1, GLO1, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, SAYSD1, LRFN2, ZFAND3, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.440397667390957 51 0.057316602666038 1.13591220806722 2841 0.289623117160994 4 2 2 -6.86278940587511 LTS-026 chr6 41658559 41658657 99 * TFEB NA 0 NA 1.216 1 NA NA NA NA NA LTS-026 chr6 41658658 43754195 2095538 * c(TOMM6, DNPH1, CNPY3, FRS3, SLC22A7, KLHDC3, TAF8, PTCRA, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, CRIP3, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, PGC, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, DLK2, SRF, TBCC, BYSL, VEGFA, TFEB, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, MAD2L1BP, CUL7 NA NA NA NA NA NA NA NA NA LTS-026 ) 0.441319784204566 81 0.0632360314932266 1.07560700359218 4652 0.243509508404012 4 2 2 -7.02888197627228 LTS-026 NA NA NA NA LTS-026 chr6 43754196 43968277 214082 * c(LINC01512, VEGFA) NA 0 NA 0.697 1 NA NA NA NA NA LTS-026 chr6 43968278 47593186 3624909 * c(ANKRD66, MIR4647, MIR4642, RCAN2, CAPN11, TCTE1, SLC29A1, ADGRF5, TDRD6, SPATS1, C6orf223, ENPP4, CD2AP, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, MEP1A, TMEM151B, NFKBIE, CYP39A1, CLIC5, TMEM63B, AARS2, ENPP5, MRPL14, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.423903105749898 73 0.0428530949563317 0.963002417837723 2685 0.229538713132144 3 2 1 -7.04271765549597 LTS-026 chr6 47593187 49399240 1806054 * c(OPN5, ADGRF4, ADGRF2, CD2AP, PTCHD4, MUT) 0.201756426691483 2 0.312541197284454 1.06988979678898 408 0.300954341402798 3 3 0 -6.76319721698218 LTS-026 chr6 49399241 53795089 4395849 * c(MIR5685, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, GSTA5, ICK, DEFB110, DEFB112, DEFB113, DEFB114, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, GLYATL3, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, MUT, PGK2, PKHD1, CENPQ, LRRC1, RHAG, ELOVL5, RPS16P5, TFAP2B, CRISP2, LOC730101, GSTA7P, TFAP2D, GCM1, PAQR8, TRAM2) 0.425315309370258 41 0.0785591512422483 0.801633356563768 2652 0.258666402065413 2 1 1 -6.77836994421812 LTS-026 chr6 53795090 53847520 52431 * character(0) NA 0 NA 0.989 1 NA NA NA NA NA LTS-026 chr6 53847521 56566826 2719306 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, HMGCLL1, BMP5, DST, COL21A1, MLIP) 0.453786641873883 35 0.0326715768332829 0.968338066970146 1692 0.214057039258413 2 1 1 -7.77985711809439 LTS-026 chr6 56566827 56569076 2250 * DST NA 0 NA 0.894 1 NA NA NA NA NA LTS-026 chr6 56569077 57244767 675691 * c(BEND6, ZNF451, RAB23, PRIM2, KIAA1586, DST, BAG2) 0.465415978467426 4 0.0443574495810268 0.839557929768374 604 0.173901376156573 2 1 1 -7.0823286342457 LTS-026 chr6 57244768 57244780 13 * PRIM2 0.463 1 NA 1.122 1 NA NA NA NA NA LTS-026 chr6 57244781 57372361 127581 * PRIM2 0.465765348698737 7 0.0400624512480202 1.06965932637683 19 0.205500216985984 4 2 2 -7.18828590210286 LTS-026 chr6 57372362 57393125 20764 * PRIM2 0.318 1 NA 1.07781079527371 8 0.311198575786311 3 3 0 -5.76481431639521 LTS-026 chr6 57393126 58445594 1052469 * c(GUSBP4, PRIM2) 0.347865701020901 36 0.0684197131158641 1.21010343279259 98 0.678026842940254 4 3 1 -6.73766652290997 LTS-026 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.754 1 NA NA NA NA NA LTS-026 chr6 62390154 62407067 16914 * KHDRBS2 0.452 1 NA 1.15723368247319 25 0.285297400385399 4 4 0 -5.76465442199852 LTS-026 chr6 62407068 73951866 11544799 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.430944944219701 51 0.0980607134861447 0.960619940727336 2711 0.263474580532325 3 2 1 -7.12123269079934 LTS-026 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.736 1 NA NA NA NA NA LTS-026 chr6 73952151 74493430 541280 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.449041529626366 18 0.0420489910349681 0.823868559787238 714 0.179249457251647 2 1 1 -6.84554945467394 LTS-026 chr6 74493431 74493432 2 * CD109 0.481 1 NA 1.254 1 NA NA NA NA NA LTS-026 chr6 74493433 91296606 16803174 * c(HMGN3-AS1, LOC100506804, MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, RWDD2A, CNR1, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PM20D2, SRSF12, CFAP206, PRSS35, LCA5, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, ORC3, GABRR1, GABRR2, IBTK, SENP6, SNORD50A, FILIP1, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, ME1, MYO6, NT5E, CYB5R4, UBE2J1, PGM3, PHIP, AKIRIN2, FAM46A, TMEM30A, RARS2, SMIM8, LYRM2, SNX14, NA NA NA NA NA NA NA NA NA LTS-026 RRAGD, BCKDHB, BACH2, RNY4, LINC01590, ELOVL4, MAP3K7, SNORD50B, TPBG, TTK, SPACA1, SH3BGRL2, GJA10, RNGTT, LINC01621, UBE3D, TBX18, HMGN3, SNAP91, CASP8AP2) 0.436879283077243 94 0.108367529228021 0.943706047614986 7468 0.275487948106788 3 2 1 -7.49796038099548 LTS-026 NA NA NA NA LTS-026 chr6 91296607 91296668 62 * MAP3K7 NA 0 NA 1.137 1 NA NA NA NA NA LTS-026 chr6 91296669 110550223 19253555 * c(LIN28B-AS1, TSTD3, MIR2113, LOC100422737, MIR4643, LOC100996634, FUT9, ASCC3, BVES, SEC63, KLHL32, BVES-AS1, AIM1, EPHA7, CCDC162P, AK9, FOXO3, UFL1, LACE1, MMS22L, SCML4, PNISR, FBXL4, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, GRIK2, NDUFAF4, LINC00222, LIN28B, C6orf203, CDC40, COQ3, POU3F2, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM13, PRDM1, POPDC3, TSG1, MICAL1, SIM1, SMPD2, MAP3K7, NR2E1, MCHR2-AS1, NA NA NA NA NA NA NA NA NA LTS-026 MANEA, GPR63, ARMC2, MCHR2, FAXC, RTN4IP1, USP45, SNX3, CD164, CCNC, WASF1, FHL5, ATG5, ZBTB24, FIG4) 0.43566335782903 165 0.0792104245194399 1.0692577240964 6232 0.298836231424575 3 2 1 -7.13708822741577 LTS-026 NA NA NA NA LTS-026 chr6 110550224 110620195 69972 * c(CDC40, METTL24) NA 0 NA 1.19279718961775 68 0.469413912451271 4 NA NA -5.76444746373317 LTS-026 chr6 110620196 110712991 92796 * METTL24 0.264 1 NA 0.685926113003929 23 0.143526436396449 1 1 0 -5.77858989888747 LTS-026 chr6 110712992 112513073 1800082 * c(TRAF3IP2, GTF3C6, SLC16A10, CDK19, FYN, AMD1, LAMA4, GSTM2P1, TUBE1, REV3L, FAM229B, TRAF3IP2-AS1, METTL24, RPF2, DDO, SLC22A16, WISP3, MFSD4B) 0.276719560853039 27 0.0801551380377213 0.710157657988014 1624 0.256252871667903 2 2 0 -7.10451418771931 LTS-026 chr6 112513074 112521230 8157 * LAMA4 NA 0 NA 1.128 1 NA NA NA NA NA LTS-026 chr6 112521231 114183594 1662364 * c(LAMA4, MARCKS, RFPL4B) 0.252 1 NA 1.21098502761166 153 0.300864433126854 4 4 0 -5.76442434454045 LTS-026 chr6 114183595 114260641 77047 * c(LINC01268, FLJ34503, HDAC2, MARCKS) 0 1 NA 1.29129001356856 147 0.755084140583505 4 4 0 -5.76475630260776 LTS-026 chr6 114260642 129762152 15501511 * c(TRAPPC3L, LOC100287632, MIR5695, TRDN, SMPDL3A, NUS1, COL10A1, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, HEY2, BRD7P3, FRK, VGLL2, FAM26E, MCM9, ASF1A, GJA1, DCBLD1, LOC285762, DSE, HDAC2, HSF2, RSPH4A, C6orf58, KPNA5, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, MAN1A1, FAM26F, HDDC2, RWDD1, PLN, PKIB, ECHDC1, GOPC, SERINC1, NA NA NA NA NA NA NA NA NA LTS-026 PTPRK, TRMT11, ROS1, LOC643623, MIR548B, TPD52L1, TSPYL1, TPI1P3, RNF217-AS1, FAM184A, RNF146, RSPO3, KIAA0408) 0.167358473484653 131 0.0475326855432142 1.25446907547 6059 0.379431699097184 4 4 0 -6.89898844605544 LTS-026 NA NA NA NA LTS-026 chr6 129762153 129763247 1095 * LAMA2 NA 0 NA 0.967 1 NA NA NA NA NA LTS-026 chr6 129763248 144768505 15005258 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, MIR4465, CITED2, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, ADAT2, TAAR1, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, HEBP2, FUCA2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, HIVEP2, TAAR6, SLC35D3, IFNGR1, ECT2L, ARG1, HMGA1P7, LAMA2, NA NA NA NA NA NA NA NA NA LTS-026 MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, TCF21, TNFAIP3, UTRN, OR2A4, SF3B5, TAAR8, STX7, L3MBTL3, LTV1, REPS1, PEX3, STX11, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, PHACTR2, BCLAF1) 0.203282682497738 105 0.0708003732839231 1.12192361762997 7326 0.405464161132894 4 4 0 -7.06791833008005 LTS-026 NA NA NA NA LTS-026 chr6 144768506 144878337 109832 * UTRN 0.246 1 NA 1.07003755720293 165 0.168368182235709 3 3 0 -5.76994499787552 LTS-026 chr6 144878338 144981426 103089 * UTRN NA 0 NA 1.18705615757131 33 0.287240093322853 4 NA NA -5.76467570814492 LTS-026 chr6 144981427 144999540 18114 * UTRN NA 0 NA 0.648 1 NA NA NA NA NA LTS-026 chr6 144999541 150132607 5133067 * c(UST-AS1, LOC100507557, UST, RAB32, KATNA1, GINM1, STXBP5, TAB2, SASH1, SHPRH, GRM1, ZC3H12D, NUP43, SUMO4, SAMD5, PCMT1, RPS18P9, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, FBXO30, PPIL4, LATS1) 0.295618512884631 47 0.0581725001868009 0.718224600203667 2358 0.186077486967702 1 1 0 -8.25758330641296 LTS-026 chr6 150132608 150139943 7336 * LRP11 NA 0 NA 0.975 1 NA NA NA NA NA LTS-026 chr6 150139944 153308822 3168879 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.270848742502195 84 0.0700078052774868 0.817705715552678 2756 0.723314597239908 2 2 0 -6.73373762396846 LTS-026 chr6 153308823 153310807 1985 * MTRF1L NA 0 NA 1.62881545571532 40 1.43372343625494 6 NA NA -5.76441045899424 LTS-026 chr6 153310808 158348152 5037345 * c(MIR3692, MIR4466, CNKSR3, SCAF8, IPCEF1, TIAM2, RGS17, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, ARID1B, TMEM242, ZDHHC14) 0.272232130952541 15 0.0671318532016338 0.768825127803551 1499 0.191879921830757 2 2 0 -7.1605481397945 LTS-026 chr6 158348153 158613383 265231 * c(SYNJ2-IT1, GTF2H5, SNX9, SERAC1, SYNJ2) 0.188532374082852 3 0.166385095486345 0.638210808805694 438 0.172840791020446 2 2 0 -7.21604763203965 LTS-026 chr6 158613384 158613389 6 * GTF2H5 NA 0 NA 0.735 1 NA NA NA NA NA LTS-026 chr6 158613390 167787482 9174093 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, CAHM, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, PNLDC1, C6orf118, OSTCP1, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, PARK2, MPC1, PLG, UNC93A, AGPAT4, TULP4, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, NA NA NA NA NA NA NA NA NA LTS-026 DYNLT1, LOC729603, EZR, AGPAT4-IT1, LPAL2, RSPH3, TTLL2, FNDC1, RNASET2, LINC00473, SYTL3, QKI, WTAP) 0.275620477183975 132 0.0674235008289366 0.802077508923939 4839 0.587519404902856 2 2 0 -6.75386409907433 LTS-026 NA NA NA NA LTS-026 chr6 167787483 167789279 1797 * TCP10 0.348 1 NA 0.494102146672267 48 0.421958327074172 0 0 0 -5.76446982573838 LTS-026 chr6 167789280 170190492 2401213 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, C6orf120, LINC00242, AFDN, PHF10, ERMARD, SMOC2, AFDN-AS1, TCP10, TCTE3, THBS2, FRMD1, LINC00574) 0.291599569536927 40 0.0612473704302102 0.817452701388258 1433 0.215583246663315 2 2 0 -6.81214577078798 LTS-026 chr6 170190493 170893407 702915 * c(MIR4644, LOC154449, DLL1, LINC00242, PDCD2, PSMB1, TBP, LINC00574, FAM120B) 0.353877053807376 11 0.0729973847601281 0.634030585213044 401 0.312794980638626 1 1 0 -6.73506987204183 LTS-026 chr6 170893408 170893599 192 * PDCD2 NA 0 NA 0.27859885132362 5 0.155453530033898 0 NA NA -5.76547387754349 LTS-026 chr7 193047 589066 396020 * c(WI2-2373I1.2, HRAT92, LOC442497, PDGFA, PRKAR1B, FAM20C) 0.478 1 NA 0.775303176293848 237 0.182564588588946 2 2 0 -5.79564401443838 LTS-026 chr7 589067 2627542 2038476 * c(MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, MIR339, NUDT1, GET4, CYP2W1, DNAAF5, CHST12, PRKAR1B, MAFK, MICALL2, MAD1L1, PSMG3, C7orf50, EIF3B, ZFAND2A, COX19) 0.456036175432136 85 0.0330442874029989 0.807659025811874 2416 0.191795198092101 2 1 1 -7.08835601090924 LTS-026 chr7 2627543 2629584 2042 * IQCE NA 0 NA 1.353 1 NA NA NA NA NA LTS-026 chr7 2629585 2653792 24208 * IQCE 0.438525777258493 15 0.0569654866271382 0.874397503201556 151 0.182476432661375 2 1 1 -6.74563854394582 LTS-026 chr7 2653793 2654375 583 * IQCE 0 1 NA 0.900252603180906 16 0.408171695899328 2 2 0 -5.76442459407418 LTS-026 chr7 2654376 2985510 331135 * c(AMZ1, GNA12, TTYH3, CARD11) 0.338619310102311 7 0.20388944249741 0.915734081074986 514 0.26220794637306 3 2 1 -6.81985173896766 LTS-026 chr7 2985511 4304989 1319479 * c(SDK1, CARD11) 0.371684324173872 5 0.197382116717802 0.820061189755158 308 0.160222031837132 2 1 1 -6.78940059512499 LTS-026 chr7 4304990 4823396 518407 * c(SDK1, FOXK1, AP5Z1) 0.486 1 NA 0.825665669591753 346 0.165919913162895 2 2 0 -5.76454285733319 LTS-026 chr7 4823397 5417648 594252 * c(RBAK-RBAKDN, MIR4656, MMD2, SLC29A4, WIPI2, RBAKDN, RNF216P1, RADIL, PAPOLB, RBAK, ZNF890P, TNRC18, AP5Z1) 0.447518561848344 20 0.107126229035509 0.826711874184578 892 0.207019443802956 2 1 1 -6.74784472963718 LTS-026 chr7 5417649 5427290 9642 * TNRC18 NA 0 NA 0.637 1 NA NA NA NA NA LTS-026 chr7 5427291 5938092 510802 * c(RNF216-IT1, ZNF815P, RNF216, ACTB, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.453267869055829 10 0.0594202546836234 0.734424521505979 509 0.219363223916954 2 1 1 -6.90958264606515 LTS-026 chr7 5938093 5938139 47 * character(0) NA 0 NA 0.212 1 NA NA NA NA NA LTS-026 chr7 5938140 5958596 20457 * CCZ1 NA 0 NA 0.189251496427339 55 0.167595408276662 0 NA NA -6.07158033885945 LTS-026 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.259 1 NA NA NA NA NA LTS-026 chr7 5959444 6006781 47338 * c(RSPH10B, CCZ1) 0.228014013685942 6 0.0272867489207979 1.2377635782217 71 0.665451509782063 7 6 1 -6.75854127051078 LTS-026 chr7 6006782 6012853 6072 * RSPH10B NA 0 NA 0.298 1 NA NA NA NA NA LTS-026 chr7 6012854 6803726 790873 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.451803304652097 47 0.0380142020298559 0.747019658268617 1338 0.21197242851784 2 1 1 -7.02379084705942 LTS-026 chr7 6803727 6805326 1600 * RSPH10B2 NA 0 NA 0.427 1 NA NA NA NA NA LTS-026 chr7 6805327 6844723 39397 * c(CCZ1B, RSPH10B2) NA 0 NA 0.226671970773521 53 0.287112414328497 0 NA NA -5.89412842740688 LTS-026 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.931 1 NA NA NA NA NA LTS-026 chr7 6845571 6864382 18812 * CCZ1B 0.326259595825718 2 0.0742462120245875 1.85309731699052 39 0.768801910681644 10 7 3 -6.74787411094235 LTS-026 chr7 6864383 6865811 1429 * CCZ1B NA 0 NA 0.684 1 NA NA NA NA NA LTS-026 chr7 6865812 22526636 15660825 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, CDCA7L, C1GALT1, ANKMY2, RPA3, SP4, TWIST1, UMAD1, ISPD, SCIN, DNAH11, PHF14, HDAC9, RAPGEF5) 0.449999122920227 132 0.0467638526125981 0.809378735046374 5000 0.305642806852895 2 1 1 -6.88800317057491 LTS-026 chr7 22526637 22852262 325626 * c(LOC100506178, STEAP1B, IL6, TOMM7) 0 1 NA 0.788792238721788 76 0.306865438251007 2 2 0 -5.76941080508345 LTS-026 chr7 22852263 24870553 2018291 * c(KLHL7-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, DFNA5, RPS2P32, OSBPL3, TRA2A, FAM221A, NPY, MPP6, TOMM7, KLHL7, STK31, SNORD93, FAM126A, CCDC126) 0.395412958858379 17 0.115856528923137 0.778755156191259 1292 0.382495834788879 2 1 1 -6.81970706702686 LTS-026 chr7 24870554 24873930 3377 * OSBPL3 NA 0 NA 1.073 1 NA NA NA NA NA LTS-026 chr7 24873931 30876278 6002348 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CBX3, C7orf31, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, OSBPL3, GARS, C7orf71, SNX10, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, CYCS, NA NA NA NA NA NA NA NA NA LTS-026 CPVL, FKBP14, NPVF, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.380581066567662 59 0.0585523688231173 1.03592681508309 3493 0.600312015745426 3 2 1 -6.80132655940762 LTS-026 NA NA NA NA LTS-026 chr7 30876279 32625431 1749153 * c(DPY19L1P1, LOC100130673, INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, AVL9, LSM5, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.366646060323406 37 0.0803000847048345 1.14979524629018 1197 0.329563904943695 4 3 1 -6.81445795422513 LTS-026 chr7 32625432 32625825 394 * c(DPY19L1P1, AVL9) 0.278 1 NA 1.13706879073165 9 0.254578573332478 4 4 0 -5.76442405035528 LTS-026 chr7 32625826 32660150 34325 * c(DPY19L1P1, AVL9) 0.294811500991011 2 0.00636396103067893 1.0251836412498 59 0.166976830234569 5 4 1 -6.81863011384756 LTS-026 chr7 32660151 32660606 456 * c(DPY19L1P1, AVL9) NA 0 NA 1.577 1 NA NA NA NA NA LTS-026 chr7 32660607 33946409 1285803 * c(DPY19L1P1, MIR550B2, FKBP9, BMPER, AVL9, KBTBD2, BBS9, LINC00997, ZNRF2P1, RP9P, NT5C3A, RP9, MIR550A2) 0.313144736791321 10 0.0566538220736744 1.32284034686445 494 1.33477506028968 5 4 1 -6.79009381855616 LTS-026 chr7 33946410 33946508 99 * BMPER NA 0 NA 1.51 1 NA NA NA NA NA LTS-026 chr7 33946509 34971343 1024835 * c(BMPER, DPY19L1, NPSR1, NPSR1-AS1) 0.233087930568715 11 0.0480467575294203 1.68822309355943 308 0.648293995143674 7 6 1 -6.73729611275093 LTS-026 chr7 34971344 34977635 6292 * DPY19L1 NA 0 NA 1.027 1 NA NA NA NA NA LTS-026 chr7 34977636 40314243 5336608 * c(MIR1200, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, MPLKIP, DPY19L1, KIAA0895, VPS41, AMPH, AOAH, FAM183BP, LINC00265, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, HERPUD2, SFRP4, LOC646999, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.254349062833441 73 0.0639262828162501 1.42544802855446 2499 0.366887944747926 5 4 1 -6.98294706066881 LTS-026 chr7 40314244 40356516 42273 * SUGCT NA 0 NA 1.69196316728464 5 0.214263856028029 7 NA NA -5.76587166967042 LTS-026 chr7 40356517 40488878 132362 * SUGCT NA 0 NA 1.144 1 NA NA NA NA NA LTS-026 chr7 40488879 42000924 1512046 * c(GLI3, INHBA-AS1, INHBA, SUGCT) 0.387 1 NA 1.22667210425143 193 0.302628695379072 4 4 0 -5.76635284631611 LTS-026 chr7 42000925 42970879 969955 * c(GLI3, PSMA2, C7orf25) 0.340206337847868 4 0.0358561942579893 1.27707909118705 286 0.297279266596542 4 3 1 -6.75362613594787 LTS-026 chr7 42970880 42970893 14 * c(PSMA2, C7orf25) NA 0 NA 1.121 1 NA NA NA NA NA LTS-026 chr7 42970894 53934389 10963496 * c(DDC-AS1, C7orf72, MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, C7orf57, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, TMED4, HECW1, NACAD, COBL, NUDCD3, LINC00957, SUN3, GCK, POLM, POM121L12, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, VWC2, RASA4CP, C7orf65, LINC01446, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, FIGNL1, MYO1G, NA NA NA NA NA NA NA NA NA LTS-026 SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, UPP1, C7orf25, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, TBRG4, STK17A, H2AFV) 0.346738073070381 130 0.0700596627926949 1.09928124999805 5985 0.504223337748196 4 3 1 -6.96375263799466 LTS-026 NA NA NA NA LTS-026 chr7 53934390 53934397 8 * character(0) NA 0 NA 1.212 1 NA NA NA NA NA LTS-026 chr7 53934398 54638583 704186 * c(VSTM2A, VSTM2A-OT1, HPVC1) 0.289682461137371 5 0.162313585383356 1.35456451280189 131 0.673072575286687 5 4 1 -6.73490639732519 LTS-026 chr7 54638584 57531782 2893199 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, DKFZp434L192, SEC61G, SUMF2, GBAS, VSTM2A-OT1, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.33954541225209 42 0.0859176908063522 1.00270176817678 1304 0.27245411149367 3 2 1 -7.02283580815696 LTS-026 chr7 57531783 57533232 1450 * ZNF716 NA 0 NA 1.32907061036482 25 0.419830850859407 5 NA NA -5.76442352905616 LTS-026 chr7 62758725 63023528 264804 * ZNF733P 0.447 1 NA 1.40758448214925 7 0.396599894339971 5 5 0 -5.76443834297218 LTS-026 chr7 63023529 63537743 514215 * c(LINC01005, ZNF727) 0.424802249500845 3 0.0825005050489592 1.18754337228674 79 0.322221668475575 4 2 2 -6.7370876494261 LTS-026 chr7 63537744 63537783 40 * ZNF727 0.383 1 NA 0.967 1 NA NA NA NA NA LTS-026 chr7 63537784 64539088 1001305 * c(LOC100128885, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.375123277260927 10 0.0888669417350082 0.846968004353021 521 0.198193072472479 2 1 1 -6.96629199535593 LTS-026 chr7 64539089 64639758 100670 * character(0) NA 0 NA 0.619 1 NA NA NA NA NA LTS-026 chr7 64639759 65084068 444310 * ZNF92 NA 0 NA 0.554202723323204 85 0.101558683067685 1 NA NA -6.23698574273317 LTS-026 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 0.988 1 NA NA NA NA NA LTS-026 chr7 65150661 65824897 674237 * c(VKORC1L1, CRCP, GUSB, ASL, LOC441242, CCT6P1, INTS4P2, SNORA22, TPST1) 0.40299589904312 3 0.276062191060879 0.933677534763815 377 0.184770235238595 3 2 1 -6.8224767093506 LTS-026 chr7 65824898 66786524 961627 * c(MIR4650-2, KCTD7, RABGEF1, LINC00174, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, STAG3L4, GTF2IRD1P1, TPST1) 0.413813837202826 10 0.0543584808879391 0.779705079025405 535 0.15128317482428 2 1 1 -6.88177012567686 LTS-026 chr7 69063868 71488825 2424958 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.454675354091142 7 0.0316934723638195 1.06598141186467 491 0.245664691238319 4 2 2 -7.42086021552491 LTS-026 chr7 71488826 78256447 6767622 * c(POM121C, PMS2P9, LOC100133091, MIR4284, APTR, MIR4651, MIR4650-1, MIR548AU, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, TBL2, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, MLXIPL, STYXL1, PMS2P5, NA NA NA NA NA NA NA NA NA LTS-026 PMS2P3, GSAP, LOC541473, STAG3L1, POR, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1B, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.405170512127394 76 0.0795418581187443 0.900609808736768 4544 0.26553038658586 2 1 1 -7.17061248562566 LTS-026 NA NA NA NA LTS-026 chr7 78256448 87183230 8926783 * c(MIR548M, MAGI2-AS3, MAGI2-AS2, SEMA3A, SEMA3C, TP53TG1, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, ABCB1, ABCB4, CROT, CACNA2D1, TMEM243, CD36, SEMA3E, MAGI2, DMTF1) 0.434201096620569 41 0.0479932032789603 1.17840215892679 2643 0.277781973689399 4 2 2 -6.78330082293719 LTS-026 chr7 87183231 87190569 7339 * ABCB1 NA 0 NA 0.899 1 NA NA NA NA NA LTS-026 chr7 87190570 92818310 5627741 * c(LOC101409256, AKAP9, CDK6, DBF4, RUNDC3B, CYP51A1, SAMD9L, C7orf62, ZNF804B, HEPACAM2, FAM133B, STEAP2, STEAP1, LRRD1, DPY19L2P4, PEX1, CDK14, ABCB1, ADAM22, ANKIB1, SAMD9, SLC25A40, GATAD1, SRI, STEAP4, MTERF1, CFAP69, FZD1, RBM48, NA, GTPBP10, KRIT1, CLDN12) 0.37290614490058 79 0.0767027926682977 1.01186915600773 3720 0.251355223217465 3 2 1 -6.80991227210239 LTS-026 chr7 92818311 92818408 98 * HEPACAM2 NA 0 NA 0.907 1 NA NA NA NA NA LTS-026 chr7 92818409 98592339 5773931 * c(MIR3609, LOC100506136, MIR4652, SLC25A13, BET1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, HEPACAM2, BRI3, TECPR1, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, VPS50, BAIAP2L1, SDHAF3, MIR489, CASD1, TAC1, MIR591, MIR653, SHFM1, TFPI2, CALCR, TRRAP, SGCE) 0.4126563031198 83 0.0669518315804993 0.942935733109277 3443 0.220591073105937 3 2 1 -7.1552749889956 LTS-026 chr7 98592340 98592420 81 * TRRAP NA 0 NA 0.89 1 NA NA NA NA NA LTS-026 chr7 98592421 100486656 1894236 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPHB4, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, NA NA NA NA NA NA NA NA NA LTS-026 C7orf43, MEPCE, AZGP1, SLC12A9, SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, TRIP6, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.4145416625571 88 0.0984423295202796 0.881320579332245 4930 0.683724512046226 2 1 1 -6.75839704745848 LTS-026 NA NA NA NA LTS-026 chr7 100486657 100549499 62843 * c(UFSP1, ACHE) NA 0 NA 0.931862983064824 90 0.185409284749741 3 NA NA -5.77317253286231 LTS-026 chr7 100549500 100549505 6 * character(0) 0.207 1 NA 2.642 1 NA NA NA NA NA LTS-026 chr7 100549506 100550485 980 * character(0) 0.340621647739853 35 0.119552927697353 1.68048463964607 58 0.617259726920458 7 5 2 -6.73314700347636 LTS-026 chr7 100550486 100551118 633 * character(0) 0.276107311007383 11 0.103323059117772 0.616534730508781 39 0.41114905309346 2 2 0 -6.73530348757719 LTS-026 chr7 100551119 100551122 4 * character(0) 0.218 1 NA 1.71 1 NA NA NA NA NA LTS-026 chr7 100551123 100552867 1745 * character(0) 0.344641306576454 60 0.0770917275930228 1.73194527799791 98 0.929421145433885 4 3 1 -6.7339729544222 LTS-026 chr7 100552868 100552894 27 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-026 chr7 100552895 100677181 124287 * c(MUC12, MUC17) 0.39737009909553 32 0.070704747296929 0.970535384273579 272 0.309875734260041 3 2 1 -6.73573829474438 LTS-026 chr7 100677182 100677441 260 * MUC17 NA 0 NA 1.699 1 NA NA NA NA NA LTS-026 chr7 100677442 100679290 1849 * MUC17 0.340278324328908 17 0.0651922496295741 1.90858832496357 42 0.825336952271697 7 5 2 -6.73327256742276 LTS-026 chr7 100679291 100679406 116 * MUC17 NA 0 NA 1.181 1 NA NA NA NA NA LTS-026 chr7 100679407 100804332 124926 * c(MIR4653, AP1S1, MUC17, SERPINE1, TRIM56) 0.320367121032765 12 0.162861974466948 0.894601260670546 384 0.414749677948924 4 3 1 -6.782846564919 LTS-026 chr7 100804333 100806105 1773 * c(AP1S1, VGF) 0.448 1 NA 0.637304936917292 11 0.139061203007231 1 1 0 -5.76441019010772 LTS-026 chr7 100806106 102121432 1315327 * c(LOC100289561, MIR4285, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, COL26A1, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, PLOD3, MYL10) 0.372144664177371 14 0.155058726910835 0.901968783676315 1461 0.202844515079355 2 1 1 -6.95271470006846 LTS-026 chr7 102121433 102136562 15130 * RASA4B NA 0 NA 0.482 1 NA NA NA NA NA LTS-026 chr7 102136563 102389525 252963 * c(RASA4B, SPDYE2B, RASA4, FAM185A, POLR2J2, POLR2J3) NA 0 NA 0.421355511790503 40 0.514432400682339 0 NA NA -5.76647095925149 LTS-026 chr7 102389526 107664124 5274599 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, NAMPT, LRRC17, COG5, DUS4L, CCDC71L, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, HBP1, DNAJC2, GPR22, SLC26A4-AS1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, ORC5, SLC26A4, PIK3CG, PUS7, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, ARMC10, PMPCB) 0.407678635497274 56 0.0868346372179859 0.887218934480686 3899 0.228086993343657 2 1 1 -7.04733375560466 LTS-026 chr7 107664125 107664223 99 * LAMB4 NA 0 NA 0.877 1 NA NA NA NA NA LTS-026 chr7 107664224 134143959 26479736 * c(LOC100130705, SMKR1, MIR3666, RNA5SP244, AASS, FAM3C, CFTR, ZNF277, TSGA13, CPA1, CPA2, KLF14, SSMEM1, LRGUK, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, ZNF800, TFEC, LAMB4, KLHDC10, AKR1B1, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POT1, HYALP1, TES, COPG2, SND1, SND1-IT1, LSMEM1, TPI1P2, FLJ40288, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, FAM71F2, NA NA NA NA NA NA NA NA NA LTS-026 IFRD1, IMPDH1, IRF5, KCND2, KCP, LINC-PINT, RNF148, ARF5, FEZF1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, EIF3IP1, LMOD2, MIR335, NDUFA5, NRCAM, NRF1, PNPLA8, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, PODXL, GPR85, ING3, LRRN3, CHCHD3, PPP1R3A, RBM28, METTL2B, ANKRD7, STRIP2, PTPRZ1, EXOC4, OPN1SW, LRRC4, TMEM168, NA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 CCDC136, SLC13A1, SMO, SPAM1, MIR592, MIR593, TMEM229A, UBE2H, WNT2, GCC1, ST7, CPED1, CALU, CAPZA2, IMMP2L, CTTNBP2, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, WASL, PLXNA4, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, CEP41, DOCK4) 0.423326378660659 185 0.0722972028948284 0.929041884738598 11595 0.26496348115009 3 2 1 -8.28804721234575 LTS-026 NA NA NA NA LTS-026 chr7 134143960 134212398 68439 * AKR1B10 NA 0 NA 1.537 1 NA NA NA NA NA LTS-026 chr7 134212399 134212611 213 * AKR1B10 0.249 1 NA 1.2163872079446 3 0.498572294991743 4 4 0 -5.76441015062262 LTS-026 chr7 134212612 141765379 7552768 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, NA NA NA NA NA NA NA NA NA LTS-026 C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, TRIM24, MGAM, ADCK2, DGKI, ZC3HAV1L) 0.229084453531514 115 0.0567391652711549 1.58497139549593 5942 0.403405479175478 6 5 1 -6.91143252354287 LTS-026 NA NA NA NA LTS-026 chr7 141765380 141765555 176 * MGAM NA 0 NA 0.655 1 NA NA NA NA NA LTS-026 chr7 141765556 141794410 28855 * MGAM NA 0 NA 0.427963364561636 95 0.091496275449073 0 NA NA -5.76848296562774 LTS-026 chr7 141794411 141794586 176 * MGAM NA 0 NA 1.634 1 NA NA NA NA NA LTS-026 chr7 141794587 142641844 847258 * c(MOXD2P, MTRNR2L6, C7orf34, PRSS58, PRSS3P2, EPHB6, KEL, TRPV6, TRPV5, PRSS1, NA, MGAM, MGAM2) 0.258346007884649 52 0.0893442002800419 1.70961645291106 1265 0.574771885361385 6 5 1 -6.74134892466671 LTS-026 chr7 142641845 142643277 1433 * KEL NA 0 NA 1.378 1 NA NA NA NA NA LTS-026 chr7 142643278 143305763 662486 * c(CLCN1, OR9A2, TMEM139, EPHA1, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, ZYX, CASP2, OR6W1P, FAM131B) 0.239170029658607 7 0.059953950582728 1.54750808049016 910 0.336368268202254 7 6 1 -6.80892819285009 LTS-026 chr7 143305764 143306195 432 * character(0) NA 0 NA 0.006 1 NA NA NA NA NA LTS-026 chr7 143306196 143321183 14988 * TCAF2 NA 0 NA 0.133375929092835 39 0.13780313658782 0 NA NA -6.38837244664513 LTS-026 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.151 1 NA NA NA NA NA LTS-026 chr7 143400289 143826686 426398 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.162774810629574 8 0.0766341028151678 1.74067163810336 259 0.534538230672309 5 5 0 -6.77604703137202 LTS-026 chr7 143826687 143826988 302 * OR2A14 NA 0 NA 1.3 1 NA NA NA NA NA LTS-026 chr7 143826989 143956382 129394 * c(OR2A14, OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 1.24484546654009 53 0.310538710954772 4 NA NA -5.76507378111138 LTS-026 chr7 143956383 143956397 15 * c(OR2A7, ARHGEF34P) NA 0 NA 0.825 1 NA NA NA NA NA LTS-026 chr7 143956398 144062301 105904 * c(OR2A7, ARHGEF34P, ARHGEF5) NA 0 NA 0.834425538881984 81 0.474017615706421 2 NA NA -5.76442449557385 LTS-026 chr7 144062302 144062310 9 * ARHGEF5 NA 0 NA 1.175 1 NA NA NA NA NA LTS-026 chr7 144062311 151263045 7200735 * c(WDR86-AS1, ZNF783, MIR548I4, MIR548F4, MIR3907, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, GIMAP7, ZNF467, GIMAP1, C7orf33, EZH2, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, WDR86, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, NA NA NA NA NA NA NA NA NA LTS-026 GIMAP5, TMEM176A, ZNF398, RARRES2, RHEB, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.219208419110925 92 0.0486237775078247 1.48917376197107 5486 0.387281883220998 6 5 1 -7.25922182188757 LTS-026 NA NA NA NA LTS-026 chr7 151263046 151263576 531 * PRKAG2 NA 0 NA 0.856 1 NA NA NA NA NA LTS-026 chr7 151263577 158896615 7633039 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, DNAJB6, PRKAG2-AS1, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, GALNTL5, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, PRKAG2, NCAPG2, WDR60, ACTR3B, ESYT2, PTPRN2, KMT2C, GALNT11, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, XRCC2, UBE3C) 0.229610692750594 140 0.0578114644014354 1.3521814255891 4104 0.651171648927705 6 5 1 -7.17150410919997 LTS-026 chr7 158896616 159025951 129336 * VIPR2 NA 0 NA 1.34656555870128 39 0.253281150957783 5 NA NA -5.76625259436629 LTS-026 chr8 182757 281022 98266 * ZNF596 0.228 1 NA 0.71518013639503 95 0.232924486367114 1 1 0 -5.77856967783235 LTS-026 chr8 281023 13947470 13666448 * c(FAM66B, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LINC00681, DLC1, CLDN23, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDRP, ERICH1, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, C8orf74, CLN8, FDFT1, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FBXO25, ANGPT2, FAM86B3P, NA NA NA NA NA NA NA NA NA LTS-026 XKR6, LOC286083, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, MIR124-1, FAM90A7P, FAM90A10P, MSRA, DEFA8P, DEFA9P, DEFA10P, DEFB107B, PINX1, AGPAT5, KIAA1456, DEFB135, DEFB136, DEFB134, ERICH1-AS1, BLK, CSMD1, USP17L4, USP17L3, LOC649352, FAM86B2, SPAG11A, MTMR9, MIR596, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, SOX7, FAM167A, SLC35G5, LINC00208, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 FAM167A-AS1, FAM86B1, TNKS, ERI1, LONRF1, MYOM2, DLGAP2, MFHAS1, RP1L1, ARHGEF10, KBTBD11) 0.284193913192341 163 0.0754016365968572 0.770424790578157 5454 1.22772747050336 2 2 0 -6.78273540163342 LTS-026 NA NA NA NA LTS-026 chr8 13947471 16850498 2903028 * c(SGCZ, FGF20, MSR1, MIR383, TUSC3) 0.265726639566857 10 0.046853080060025 0.866178503565377 318 0.287591190935302 2 2 0 -6.77944486302228 LTS-026 chr8 16850499 16907125 56627 * c(FGF20, MICU3) 0.25 1 NA 0.707902218112504 37 0.269547301503368 1 1 0 -5.76946888800128 LTS-026 chr8 16907126 17014350 107225 * c(MICU3, ZDHHC2) 0.174207716160434 4 0.0480312398340913 0.858454633037327 74 0.235178685011518 4 4 0 -6.89690505195237 LTS-026 chr8 17014351 18392627 1378277 * c(NAT2, VPS37A, FGL1, PSD3, CNOT7, ASAH1, PCM1, ZDHHC2, PDGFRL, MTUS1, SLC7A2, NAT1, MTMR7) 0.224084604636467 42 0.0670755809935432 1.06143691882131 1400 0.773473132087315 3 3 0 -6.73803560116246 LTS-026 chr8 18392628 33455306 15062679 * c(RBPMS-AS1, LOC100128993, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, LZTS1-AS1, NRG1-IT3, SORBS3, NPM2, DCTN6, PNMA2, ADAM28, RBPMS, LZTS1, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, EGR3, R3HCC1, LGI3, DMTN, EPHX2, EXTL3, PTK2B, XPO7, TRIM35, RHOBTB2, KIF13B, PSD3, LEPROTL1, SLC39A14, LOC254896, GFRA2, ADAMDEC1, GNRH1, LOC286059, LOC286114, NA NA NA NA NA NA NA NA NA LTS-026 SCARA5, FAM183CP, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, LOXL2, LPL, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2CB, INTS10, PPP2R2A, CCDC25, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, TEX15, CCAR2, LINC00589, MBOAT4, SH2D4A, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, SLC18A1, POLR3D, BNIP3L, STC1, WRN, DUSP26, HMBOX1, FZD3, RNF122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 NUDT18, UBXN8, DOCK5, BIN3-IT1, TTI2, REEP4, STMN4, MAK16, FUT10, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, PHYHIP) 0.221847768076641 256 0.0502742966331781 0.963944257405843 10765 0.260631598061733 3 3 0 -7.11966623636722 LTS-026 NA NA NA NA LTS-026 chr8 35092915 35579680 486766 * UNC5D 0 1 NA 1.38623490560643 63 0.430717384647739 5 5 0 -5.76456753521586 LTS-026 chr8 35579681 36767045 1187365 * c(UNC5D, KCNU1) NA 0 NA 1.32959934392254 289 0.244111337573002 5 NA NA -5.7962120786598 LTS-026 chr8 36767046 36768484 1439 * KCNU1 NA 0 NA 1.018 1 NA NA NA NA NA LTS-026 chr8 36768485 37455059 686575 * KCNU1 0.397 1 NA 1.21003374360849 99 0.22030173738242 4 4 0 -5.76441117295736 LTS-026 chr8 37455060 39142479 1687420 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.366070317283123 36 0.0733509935445203 1.17692571870148 2675 0.281275276724898 4 3 1 -6.8073383307204 LTS-026 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.869 1 NA NA NA NA NA LTS-026 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 2.2029524260471 57 0.608791015559992 9 NA NA -5.76443137159075 LTS-026 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.182 1 NA NA NA NA NA LTS-026 chr8 39442068 41119562 1677495 * c(IDO2, ADAM2, IDO1, C8orf4, SFRP1, ZMAT4, ADAM18) 0.418536342381593 12 0.0312161331637499 1.28658622930266 457 0.349565224190532 5 3 2 -6.79215703658288 LTS-026 chr8 41119563 43002177 1882615 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, GOLGA7, PLAT, POLB, THAP1, MIR486-1, SFRP1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, GINS4, HOOK3, CHRNA6) 0.373175329420352 20 0.20581404483813 1.07589552476778 2298 0.33022855752336 3 2 1 -6.77360265216075 LTS-026 chr8 43002178 43212050 209873 * c(HGSNAT, POTEA) NA 0 NA 1.16240074010738 199 0.274662435970617 4 NA NA -5.76705450625744 LTS-026 chr8 47752736 48300856 548121 * c(LOC100287846, SPIDR, LINC00293) 0 1 NA 0.95930891712813 130 0.227813779232838 3 3 0 -5.78745296433783 LTS-026 chr8 48300857 48975705 674849 * c(CEBPD, SPIDR, MCM4, PRKDC, UBE2V2) 0.396557180007468 9 0.155200229094905 0.946241866678983 808 0.211510430734938 3 2 1 -6.7826671468322 LTS-026 chr8 48975706 62545282 13569577 * c(LOC100130298, SBF1P1, LINC00968, LINC01606, LYPLA1, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CLVS1, CYP7A1, SDR16C5, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MOS, ASPH, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, CHD7, RAB2A, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, CA8, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, TOX, RB1CC1) 0.390080691227826 73 0.069950588670885 1.12838208439759 4272 0.270219865067014 4 2 2 -7.42421358979903 LTS-026 chr8 62545283 62546169 887 * ASPH NA 0 NA 0.946 1 NA NA NA NA NA LTS-026 chr8 62546170 67972815 5426646 * c(TCF24, MIR124-2HG, LINC00967, RRS1-AS1, C8orf44-SGK3, MIR4470, YTHDF3-AS1, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, MIR124-2, ASPH, MYBL1, PDE7A, ARMC1, LINC00251, C8orf44, SNHG6, SNORD87, UG0898H09, TTPA, VCPIP1, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.346908123719299 18 0.0568360789400628 1.00469764235227 1993 0.262145065523542 3 2 1 -7.22594202964844 LTS-026 chr8 67972816 67973598 783 * COPS5 NA 0 NA 1.148 1 NA NA NA NA NA LTS-026 chr8 67973599 69703824 1730226 * c(ARFGEF1, COPS5, C8orf34, C8orf34-AS1, CPA6, CSPP1, PREX2) 0.365345433000122 39 0.0755084340768244 1.08621610605236 1142 0.267475590260314 3 2 1 -6.91569560409563 LTS-026 chr8 69703825 69703964 140 * C8orf34 0.317 1 NA 1.15637782510664 5 0.434650204187229 4 4 0 -5.76441102883332 LTS-026 chr8 69703965 75171716 5467752 * c(STAU2-AS1, C8orf89, MSC-AS1, LINC01592, NCOA2, C8orf34, RDH10, SBSPON, EYA1, SULF1, TRAM1, LY96, STAU2, LACTB2-AS1, XKR9, LOC392232, LACTB2, TMEM70, UBE2W, JPH1, RPL7, PRDM14, TCEB1, TERF1, SLCO5A1, TRPA1, MSC, KCNB2) 0.293616589998502 30 0.117522626826037 1.0944050333271 2173 0.294847732737919 3 3 0 -7.14834108250826 LTS-026 chr8 75171717 75171722 6 * JPH1 NA 0 NA 1.163 1 NA NA NA NA NA LTS-026 chr8 75171723 79646049 4474327 * c(ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, LOC101241902, HNF4G, IL7, MIR2052HG, PI15, ZC2HC1A, GDAP1, PKIA, JPH1, PEX2, ZFHX4, CRISPLD1) 0.270713722998619 19 0.107615869826882 1.22472668741604 1083 0.907790106029943 5 4 1 -6.82330120659259 LTS-026 chr8 79646050 79648645 2596 * IL7 NA 0 NA 0.793 1 NA NA NA NA NA LTS-026 chr8 79648646 95261685 15613040 * c(C8orf88, LRRC69, REXO1L2P, MIR378D2, MIR4661, MIR5708, LINC00534, CDH17, WWP1, STMN2, SLC26A7, FAM92A1, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, GEM, TRIQK, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf87, RBM12B, C8orf59, MMP16, FLJ46284, NBN, RMDN1, OTUD6B, PMP2, PDP1, CNGB3, RBM12B-AS1, TMEM55A, PAG1, ZNF704, SNX16, NECAB1, LINC00535, FABP9, FABP12, NA NA NA NA NA NA NA NA NA LTS-026 ZBTB10, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67, CHMP4C) 0.267348812419073 100 0.0644701606649279 1.11276761140279 5234 0.307091158476606 3 3 0 -7.73007205750479 LTS-026 NA NA NA NA LTS-026 chr8 95261686 95261716 31 * GEM 0.275 1 NA 0.33 1 NA NA NA NA NA LTS-026 chr8 95261717 100904183 5642467 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, C8orf37-AS1, FSBP, RIDA, CPQ, POP1, OSR2, COX6C, NDUFAF6, C8orf37, VPS13B, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, DPY19L4, KCNS2, GDF6, MATN2, MTERF3, ESRP1, LAPTM4B, INTS8, RPL30, LINC01298, SDC2, STK3, MIR599, UQCRB, PLEKHF2, NIPAL2, TSPYL5, CCNE2, MTDH, TP53INP1, PTDSS1) 0.254663630778003 51 0.072350492227007 1.02584626788284 3227 0.276889594097212 3 3 0 -6.87288771310419 LTS-026 chr8 100904184 101931684 1027501 * c(MIR4471, COX6C, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, POLR2K, SPAG1, YWHAZ) 0.260994319052932 19 0.0412607597166807 0.936517328919208 760 0.228447030545063 2 2 0 -6.93400861478393 LTS-026 chr8 101931685 101931713 29 * YWHAZ NA 0 NA 1.224 1 NA NA NA NA NA LTS-026 chr8 101931714 103661342 1729629 * c(MIR5680, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.258667365459749 16 0.0917081421321648 1.27679991713379 808 0.301884976451936 5 4 1 -6.92519969610963 LTS-026 chr8 103661343 103666172 4830 * KLF10 0.193 1 NA 1.33203164898132 73 0.493296562787992 5 5 0 -5.76443976484693 LTS-026 chr8 103666173 104081085 414913 * c(AZIN1, ATP6V1C1, KLF10) 0.190806936986422 7 0.0409343260310836 1.26192977393859 179 0.315928361573634 4 4 0 -6.7495647828911 LTS-026 chr8 104081086 104081126 41 * ATP6V1C1 NA 0 NA 1.77 1 NA NA NA NA NA LTS-026 chr8 104081127 110977738 6896612 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, SYBU, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.1890964713654 46 0.0451426509766326 1.63376183308466 2721 2.95009949792432 9 8 1 -6.77205943502628 LTS-026 chr8 110977739 122916559 11938821 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, SLC30A8, EXT1, KCNV1, MTBP, MRPL13, HAS2, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRPS1, COL14A1, DSCC1, UTP23, EIF3H, MED30) 0.168927229820413 26 0.0334868056679964 1.7270796999107 2818 0.808878208095989 6 6 0 -7.20508922211574 LTS-026 chr8 123682591 126443471 2760881 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.167567322505009 51 0.0407114957027243 1.5606168731691 2260 0.483466328372276 5 5 0 -6.83691291005757 LTS-026 chr8 126443472 126450234 6763 * TRIB1 NA 0 NA 1.25705538346088 49 0.166790830450744 4 NA NA -5.76462600337892 LTS-026 chr8 126450235 128427720 1977486 * c(LINC00861, PCAT1, TRIB1, FAM84B, CASC8) 0.348 1 NA 1.71138803299497 129 0.358466904413891 7 7 0 -5.77916596365734 LTS-026 chr8 128427721 131792580 3364860 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR5194, ADCY8, ASAP1-IT1, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977) 0.334042460229164 18 0.0608371070545867 1.73266519912172 539 0.434981298072545 7 5 2 -6.74514974556211 LTS-026 chr8 131792581 131792598 18 * ADCY8 NA 0 NA 2.097 1 NA NA NA NA NA LTS-026 chr8 131792599 133192649 1400051 * c(HHLA1, ADCY8, EFR3A, KCNQ3, OC90) 0.280061972951421 22 0.100427883280789 2.01798353194908 657 0.692953213282625 9 7 2 -6.74138221903965 LTS-026 chr8 133192650 133196508 3859 * KCNQ3 NA 0 NA 1.383 1 NA NA NA NA NA LTS-026 chr8 133196509 135490438 2293930 * c(NDRG1, TMEM71, LRRC6, KCNQ3, PHF20L1, ZFAT, ST3GAL1, SLA, TG, WISP1, HPYR1) 0.276867616780551 25 0.0266737698872881 1.70312782392379 1211 0.399540988898331 6 5 1 -6.99190200970415 LTS-026 chr8 135490439 140946146 5455708 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, TRAPPC9) 0.270355887776787 25 0.0735085029095274 1.95140366768286 957 0.509445192751029 9 7 2 -6.87278096188215 LTS-026 chr8 140946147 142221402 1275256 * c(DENND3, AGO2, CHRAC1, SLC45A4, PTK2, TRAPPC9) 0.310272919418605 18 0.0868846429265298 1.31534244004283 904 0.332115898528762 5 4 1 -6.77658452179951 LTS-026 chr8 142221403 143998610 1777208 * c(LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, MROH5, THEM6, LY6K, SLURP1, SLC45A4, ADGRB1, LINC00051, LYNX1, LINC01300, PSCA, LY6D, JRK) 0.321410017198212 64 0.0404584804567969 1.48530704553537 1348 0.643726793483196 7 5 2 -6.92798417508538 LTS-026 chr8 143998611 146280802 2282192 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, CYP11B2, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, NA NA NA NA NA NA NA NA NA LTS-026 PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, C8orf33, MIR661, TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.328950315551726 107 0.078425831225116 1.36651706567513 5976 0.326975168246538 5 4 1 -6.84588189378567 LTS-026 NA NA NA NA LTS-026 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.952094869270554 3 0.0831384387633061 3 NA NA -5.76445103609942 LTS-026 chr9 14732 154795 140064 * c(WASH1, FOXD4, CBWD1, FAM138C) 0.253 1 NA 0.517739447722073 6 0.14716611928928 0 0 0 -5.84604687667505 LTS-026 chr9 154796 8454676 8299881 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.302207779761063 110 0.056755185159908 0.727228809466569 4111 0.214165368325218 2 2 0 -8.35832796106801 LTS-026 chr9 8454677 8460325 5649 * PTPRD NA 0 NA 0.868 1 NA NA NA NA NA LTS-026 chr9 8460326 38526824 30066499 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, GNE, MIR3152, LOC100506422, EBLN3P, MIR4667, MIR4473, MIR4540, MIR4475, MIR4474, MIR4476, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, RRAGA, CCL27, PSIP1, PTENP1, DCTN3, CLTA, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, TTC39B, TRMT10B, SAXO1, FREM1, LINC00961, ATP8B5P, ELAVL2, NA NA NA NA NA NA NA NA NA LTS-026 C9orf72, CCDC171, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, DDX58, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, FBXO10, B4GALT1, DNAI1, SIT1, SPINK4, TUSC1, LURAP1L, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IGFBPL1, IL11RA, AQP3, AQP7, ENHO, LOC389705, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 FAM205BP, FAM221B, OR13J1, LINC01235, HACD4, LINC01242, TMEM215, TOMM5, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFIB, NFX1, ACO1, NPR2, PAX5, EXOSC3, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, GBA2, PTPRD, RMRP, RPS6, CCL19, CCL21, DMRTA1, POLR1E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SH3GL2, SHB, HRCT1, LRRC19, NOL6, SNAPC3, SCARNA8, MSMP, TEK, TESK1, TLN1, TPM2, FAM166B, TYRP1, VCP, CA9, DCAF10, MOB3B, CAAP1, IFT74, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, MPDZ, CCIN, SLC25A51, ADAMTSL1, LINC00950, CER1, PLAA, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.291959225557622 222 0.0649087105057792 0.794245331642443 13807 0.209460157091079 2 2 0 -7.45665794646237 LTS-026 NA NA NA NA LTS-026 chr9 38526825 43816802 5289978 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) NA 0 NA 0.777063106431139 289 0.15153195089315 2 NA NA -6.28448668754766 LTS-026 chr9 43816803 43818002 1200 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.817 1 NA NA NA NA NA LTS-026 chr9 43818003 44175697 357695 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.485459196024912 39 0.325773401372542 0 NA NA -5.77786622983321 LTS-026 chr9 65602571 66457106 854536 * LOC286297 0.259 1 NA 1.02687442413571 3 0.290241853173062 3 3 0 -5.76476569304872 LTS-026 chr9 66457107 68427877 1970771 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.381218926454524 25 0.0797999164577675 0.883124011912279 59 0.350992985654927 3 2 1 -6.95679952342889 LTS-026 chr9 68427878 68433537 5660 * FRG1JP 0.203 1 NA 0.692871393480964 5 0.0940930390624089 1 1 0 -5.76702506930181 LTS-026 chr9 68433538 77390847 8957310 * c(FRG1HP, LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, C9orf57, C9orf85, C9orf135, TRPM6, TMEM252, ALDH1A1, SMC5, TMEM2, FXN, MAMDC2, FOXD4L3, ANXA1, APBA1, PTAR1, MIR204, LOC440896, C9orf135-AS1, ABHD17B, PGM5, PRKACG, PGM5-AS1, PGM5P2, RORB, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, KLF9, ANKRD20A4, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.278667040594125 43 0.0710099660779529 0.802681634476259 2781 0.202046460362468 2 2 0 -6.87103687980535 LTS-026 chr9 77390848 77390853 6 * TRPM6 NA 0 NA 0.725 1 NA NA NA NA NA LTS-026 chr9 77390854 80855338 3464485 * c(VPS13A-AS1, CARNMT1, TRPM6, PRUNE2, VPS13A, GCNT1, OSTF1, GNAQ, FOXB2, PCA3, PCSK5, NMRK1, C9orf40, RFK, RPSAP9, CEP78, GNA14) 0.289131132171946 56 0.0446231405811455 0.736335842929212 2096 0.218097028320178 2 2 0 -7.39448864390154 LTS-026 chr9 80855339 80856588 1250 * CEP78 NA 0 NA 1.081 1 NA NA NA NA NA LTS-026 chr9 80856589 103349484 22492896 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, LOC100507346, MSANTD3-TMEFF1, MIR4670, NAMA, SEMA4D, ANP32B, SPTLC1, GADD45G, SPIN1, SEC61B, SLC35D2, CKS2, COL15A1, PTPDC1, ANKRD19P, CTSL, CTSV, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, NA NA NA NA NA NA NA NA NA LTS-026 TSTD2, ZNF782, LOC158434, LOC158435, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, FANCC, FBP1, ZNF510, HABP4, FOXE1, ERP44, FAM120A, AGTPBP1, BICD2, TDRD7, CDK20, FRMD3, GAS1, INVS, C9orf47, SPATA31E1, LOC286238, LOC286359, MIR4290HG, PSAT1, UBQLN1, HNRNPK, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, C9orf129, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, TRMO, PHF2, SHC3, NANS, NUTM2F, DIRAS2, ASPN, TEX10, AUH, STX17, NOL8, TBC1D2, HEMGN, KIF27, BARX1, PTCH1, LOC100499484-C9ORF174, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, TGFBR1, TLE1, TLE4, TMOD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 CORO2A, XPA, SECISBP2, ZCCHC6, GALNT12, RMI1, NR4A3, GKAP1, ISCA1, ZNF484, CEP78, C9orf64, CARD19, MFSD14C, MFSD14B, C9orf3, ALG2, CDC14B, TMEFF1, FBP2, FGD3, MSANTD3, GABBR2, TRIM14) 0.263554760071736 201 0.0656096306333209 0.794461522335579 12387 0.646869560795149 2 2 0 -6.79509595577807 LTS-026 NA NA NA NA LTS-026 chr9 103349485 114089882 10740398 * c(MIR548Q, SMC2, ACTL7B, ACTL7A, AKAP2, PALM2, GRIN3A, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CYLC2, ABCA1, LPAR1, FKTN, ALDOB, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13C9, OR13D1, NA, MURC, OR13C2, C9orf152, MIR32, PALM2-AKAP2, MUSK, MRPL50, EPB41L4B, PLPPR1, FAM206A, TMEM38B, NIPSNAP3B, PPP3R2, RNF20, BAAT, PTPN3, ZNF462, RAD23B, TAL2, TXN, ZNF189, SVEP1, FSD1L, TMEM246, IKBKAP, CTNNAL1, NA NA NA NA NA NA NA NA NA LTS-026 KLF4) 0.269739921736627 134 0.0573476743322569 0.835032701478118 5115 0.386419642747908 2 2 0 -6.7357053191928 LTS-026 NA NA NA NA LTS-026 chr9 114089883 114089894 12 * OR2K2 NA 0 NA 0.647 1 NA NA NA NA NA LTS-026 chr9 114089895 114090279 385 * OR2K2 0.319 1 NA 0.638822572959956 7 0.0904651998337061 1 1 0 -5.76441018781408 LTS-026 chr9 114090280 115336784 1246505 * c(MIR3134, MIR4668, ZNF483, C9orf84, KIAA1958, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, SUSD1, LRRC37A5P, UGCG, HSDL2, PTBP3) 0.363592323821305 30 0.0653971070399555 0.580213652183269 1290 0.139135856012731 1 1 0 -7.08853049945385 LTS-026 chr9 115336785 117074810 1738026 * c(FAM225B, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, ZFP37, HDHD3, COL27A1, PRPF4) 0.332205403298971 77 0.0922734131541671 0.623775322413223 2547 0.160365309839762 1 1 0 -6.77514056529686 LTS-026 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.202 1 NA NA NA NA NA LTS-026 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.177464553791297 39 0.0617207152717564 0 NA NA -6.32676441548885 LTS-026 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.513 1 NA NA NA NA NA LTS-026 chr9 117092173 117838919 746747 * c(LOC100505478, TMEM268, WHRN, TNC, ORM1, ORM2, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.345496905719396 16 0.0643873693618037 0.621485466713252 789 0.14608361912161 1 1 0 -6.75001251222556 LTS-026 chr9 117838920 117840158 1239 * TNC NA 0 NA 0.804 1 NA NA NA NA NA LTS-026 chr9 117840159 123166505 5326347 * c(SNORA70C, ASTN2-AS1, BRINP1, TRIM32, ASTN2, TNC, MIR147A, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4) 0.355022742333689 19 0.113646239868538 0.690074658808208 898 0.208402823913195 1 1 0 -7.15704287152372 LTS-026 chr9 123166506 123169321 2816 * CDK5RAP2 NA 0 NA 0.581 1 NA NA NA NA NA LTS-026 chr9 123169322 124073874 904553 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, GSN, RAB14, CDK5RAP2, PSMD5, TRAF1, C5) 0.350853939469928 3 0.00321455025366432 0.592488316777285 1385 0.123950772665461 1 1 0 -6.98467009005061 LTS-026 chr9 124073875 124461707 387833 * c(DAB2IP, STOM, GGTA1P, GSN) NA 0 NA 0.626937517227725 223 0.135648661648173 1 NA NA -5.76823899222284 LTS-026 chr9 124461708 124519236 57529 * DAB2IP NA 0 NA 0.757 1 NA NA NA NA NA LTS-026 chr9 124519237 125002218 482982 * c(MIR4478, DAB2IP, TTLL11, MORN5, LHX6, NDUFA8, RBM18) 0.256 1 NA 0.836034330518775 417 0.171079691683903 2 2 0 -5.76522137105246 LTS-026 chr9 125002219 126128648 1126430 * c(ZBTB6, OR1L8, OR1N2, OR1N1, OR1Q1, RABGAP1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, GPR21, CRB2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, PDCL, RC3H2, STRBP, PTGS1, ZBTB26, SNORD90, MIR600HG, MRRF, RBM18) 0.248259043842443 31 0.0789832839263154 0.811723130299737 1548 0.361672667017513 2 2 0 -6.78041787342783 LTS-026 chr9 126128649 126129382 734 * CRB2 NA 0 NA 1.193 1 NA NA NA NA NA LTS-026 chr9 126129383 127620840 1491458 * c(LOC100129034, MIR181A2HG, NEK6, RPL35, OLFML2A, NR5A1, NR6A1, CRB2, ADGRD2, WDR38, MIR181A2, MIR181B2, PSMB7, DENND1A, MIR601, LHX2) 0.198341108466166 21 0.0535610910660946 1.12856373632235 1179 0.300891037896557 4 4 0 -6.81721560052444 LTS-026 chr9 127620841 127622544 1704 * RPL35 NA 0 NA 0.834 1 NA NA NA NA NA LTS-026 chr9 127622545 131911271 4288727 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, ZER1, SLC27A4, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, TTC16, DNM1, ENDOG, ENG, AK1, NAIF1, DOLK, ZBTB43, ANGPTL2, NUP188, FPGS, PHYHD1, CIZ1, GAPVD1, SNORA65, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA1, GOLGA2, SCAI, CFAP157, PKN3, SLC2A8, ST6GALNAC6, HSPA5, SWI5, PTGES2-AS1, LCN2, FAM102A, LMX1B, ZBTB34, MIR199B, NA NA NA NA NA NA NA NA NA LTS-026 MIR219A2, ODF2, PBX3, COQ4, CERCAM, SPOUT1, TBC1D13, PTPA, PPP6C, LRRC8A, SH3GLB2, DOLPP1, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, ZNF79, C9orf16, MAPKAP1, PTGES2, URM1, ARPC5L, GARNL3, ZDHHC12, MIGA2, DPM2, KYAT1, MVB12B, WDR34, LRSAM1, RALGPS1) 0.204920229464719 153 0.0563695108886527 1.00515621589542 6935 0.274964877961253 3 3 0 -6.7797192197363 LTS-026 NA NA NA NA LTS-026 chr9 131911272 131937794 26523 * character(0) NA 0 NA 0.928 1 NA NA NA NA NA LTS-026 chr9 131937795 140507615 8569821 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, LAMC3, TUBB4B, UBAC1, OLFM1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, USP20, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, NA NA NA NA NA NA NA NA NA LTS-026 FAM69B, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ABCA2, FCN1, FCN2, FNBP1, SETX, PMPCA, EXOSC2, NCS1, ABL1, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, TOR1B, ABO, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, DPP7, OBP2B, OBP2A, QRFP, GLT6D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 C9orf50, PNPLA7, CYSRT1, ENTPD8, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, PAEP, MRPS2, EGFL7, PRRX2, C9orf78, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, BARHL1, REXO4, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, FAM163B, RNF224, DDX31, MRPL41, SNAPC4, SNORA17A, SNORA17B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SURF1, SURF2, SURF4, MED22, SURF6, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, BRD3, NUP214, LHX3, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, CCDC183, SNHG7, TMEM141, SSNA1, EDF1, FUBP3, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.235111191480001 356 0.0611239080979086 0.917662473409668 14000 0.713491305262776 3 3 0 -6.88048478364829 LTS-026 NA NA NA NA LTS-026 chr9 140507616 140507943 328 * ARRDC1 NA 0 NA 1.413 1 NA NA NA NA NA LTS-026 chr9 140507944 141070283 562340 * c(EHMT1-IT1, TUBBP5, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1) 0.226373232648728 12 0.0758916192921714 1.04079445450833 582 0.251273333833977 3 3 0 -6.74022144564891 LTS-026 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.71424292459495 5 0.319383781679659 1 NA NA -5.76452085823141 LTS-026 chr10 94832 95353 522 * TUBB8 0.478 1 NA 1.03643164523973 7 0.157531705047708 3 3 0 -5.76441373554527 LTS-026 chr10 95354 8093262 7997909 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, MIR5699, NET1, ADARB2, PITRM1, ZMYND11, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, KIN, DIP2C, LARP4B, GTPBP4, GDI2, LINC00700, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, GATA3-AS1, PRR26, PRKCQ-AS1, ATP5C1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, IDI2-AS1, PRKCQ, SFMBT2, ADARB2-AS1, ASB13, TUBAL3, ITIH5, NA NA NA NA NA NA NA NA NA LTS-026 CALML3, AKR1E2, TAF3, FBXO18, RBM17, AKR1C3, IDI2) 0.455360211741647 112 0.039682636395206 1.05554316408222 4261 0.278848055803899 3 2 1 -7.7932594758174 LTS-026 NA NA NA NA LTS-026 chr10 8093263 8097243 3981 * c(GATA3, GATA3-AS1) NA 0 NA 1.182 1 NA NA NA NA NA LTS-026 chr10 8097244 12149896 4052653 * c(CELF2, SFTA1P, PROSER2-AS1, LINC00710, PROSER2, UPF2, GATA3, CELF2-AS2, DHTKD1, ECHDC3, USP6NL) 0.449954179799595 17 0.0658339600367291 1.22157014104948 837 0.298973214460604 4 2 2 -6.78661996212285 LTS-026 chr10 12149897 12595362 445466 * c(NUDT5, SEC61A2, DHTKD1, CAMK1D, CDC123) NA 0 NA 1.19464969280333 365 0.24683750262489 4 NA NA -5.76508952245076 LTS-026 chr10 12595363 12620749 25387 * CAMK1D NA 0 NA 1.816 1 NA NA NA NA NA LTS-026 chr10 12620750 12695177 74428 * c(MIR4480, CAMK1D) 0.435 1 NA 1.75016022865267 7 0.317883626505047 7 7 0 -5.76454737233001 LTS-026 chr10 12695178 17905703 5210526 * c(ST8SIA6-AS1, PPIAP30, MIR1265, OPTN, RPP38, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, NA, ST8SIA6, C1QL3, ACBD7, MRC1, CDNF, HSPA14, PHYH, OLAH, MCM10, FRMD4A, CAMK1D, NA, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, HACD1, PTER, NMT2) 0.404687199763146 72 0.0823049016218713 1.43652638146709 3360 0.407277016719607 5 3 2 -6.7597464128458 LTS-026 chr10 17905704 17908589 2886 * c(MRC1, NA, TMEM236) NA 0 NA 0.073 1 NA NA NA NA NA LTS-026 chr10 17908590 18086893 178304 * c(MRC1, NA, TMEM236) NA 0 NA 0.190150649778446 39 0.29492335059477 0 NA NA -6.55183040122437 LTS-026 chr10 18086894 18087452 559 * c(MRC1, NA, TMEM236) NA 0 NA 0.516 1 NA NA NA NA NA LTS-026 chr10 18087453 18145249 57797 * c(MRC1, NA, TMEM236) NA 0 NA 0.697995866210001 47 0.49375243790309 1 NA NA -5.76556107277893 LTS-026 chr10 18145250 18152489 7240 * MRC1 NA 0 NA 1.381 1 NA NA NA NA NA LTS-026 chr10 18152490 22898705 4746216 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, COMMD3, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, DNAJC1, BMI1, CACNB2, MLLT10, PLXDC2, SPAG6) 0.421967894722673 44 0.0408403533394111 1.53681978740887 1937 0.54704577087762 6 3 3 -6.77153720789658 LTS-026 chr10 22898706 23003098 104393 * PIP4K2A NA 0 NA 1.233 1 NA NA NA NA NA LTS-026 chr10 23003099 26311553 3308455 * c(GPR158-AS1, ENKUR, ARMC3, OTUD1, MSRB2, PTF1A, C10orf67, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, MIR603, THNSL1) 0.436694434653841 26 0.0975083822826767 1.27271008748609 1308 0.325139078713779 4 2 2 -6.78347145436197 LTS-026 chr10 26311554 26591988 280435 * c(GAD2, MYO3A) 0.471186385467475 10 0.0171075032271418 0.992551826111512 292 0.243375230144588 2 1 1 -9.07985123768252 LTS-026 chr10 26591989 26993725 401737 * c(PDSS1, GAD2, APBB1IP, LINC00264, LINC00202-2) 0.429 1 NA 0.936464545664287 139 0.194764303926662 3 3 0 -5.80946332017253 LTS-026 chr10 26993726 38645343 11651618 * c(ABI1, MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, ARMC4, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, NA NA NA NA NA NA NA NA NA LTS-026 ACBD5, ARHGAP12) 0.429426825906209 113 0.074198928810748 0.944349066012263 4628 0.335125021670826 3 2 1 -7.16637054729621 LTS-026 NA NA NA NA LTS-026 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.01569483294443 55 0.206610239934499 3 NA NA -5.76442471087095 LTS-026 chr10 42379864 47756145 5376282 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, FXYD4, NPY4R, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, NA NA NA NA NA NA NA NA NA LTS-026 LINC00839, ZFAND4, GPRIN2, BMS1) 0.418401130311634 81 0.0729160243357952 0.98583492037712 2106 0.312419845223426 3 2 1 -6.8068848348464 LTS-026 NA NA NA NA LTS-026 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.21 1 NA NA NA NA NA LTS-026 chr10 47903105 48055065 151961 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.504784894569799 53 0.465440378575719 0 NA NA -5.77053550114518 LTS-026 chr10 48055066 48370391 315326 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.205 1 NA NA NA NA NA LTS-026 chr10 48370392 49701703 1331312 * c(ZNF488, FRMPD2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.400052886886065 16 0.0300521075245425 1.10501374607401 671 0.355831797052581 3 2 1 -6.77411970550532 LTS-026 chr10 49701704 49732037 30334 * c(NA, ARHGAP22) NA 0 NA 0.748 1 NA NA NA NA NA LTS-026 chr10 49732038 53457792 3725755 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MSMB, LRRC18, NA, OGDHL, PRKG1, ASAH2, WDFY4, ARHGAP22, DRGX, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.399917174344311 48 0.0446032152261542 0.997111037093402 2118 0.246804456090697 3 2 1 -6.75037678079955 LTS-026 chr10 53457793 56077209 2619417 * c(PRKG1-AS1, DKK1, CSTF2T, MBL2, PRKG1, PCDH15) 0.395654539209013 21 0.0461241079407866 1.09514291504446 719 0.345564233674991 3 2 1 -6.80594999320565 LTS-026 chr10 56077210 56089263 12054 * PCDH15 0.233 1 NA 0.894834299049093 5 0.213089887136861 2 2 0 -5.76535478954115 LTS-026 chr10 56089264 58121135 2031872 * c(MTRNR2L5, ZWINT, PCDH15) NA 0 NA 1.05249627072065 103 0.21670570999389 3 NA NA -5.79135345790555 LTS-026 chr10 59064118 63173313 4109196 * c(MIR3924, MRLN, TMEM26, SLC16A9, FAM13C, IPMK, LINC01553, ANK3, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.303296823529456 24 0.0343789358748065 0.907822778223365 1777 0.215939221287379 2 2 0 -7.66045391649278 LTS-026 chr10 63173314 63175724 2411 * TMEM26 NA 0 NA 0.589 1 NA NA NA NA NA LTS-026 chr10 63175725 70047068 6871344 * c(MIR1296, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, CTNNA3, NRBF2, ANXA2P3, LRRTM3, DNAJC12, PBLD, ARID5B, MYPN, ADO, JMJD1C-AS1) 0.299100279496093 45 0.0736982449799947 0.801518794623482 2051 0.206277962963916 2 2 0 -6.92936294682944 LTS-026 chr10 70047069 71174736 1127668 * c(DNA2, STOX1, KIF1BP, HK1, HNRNPH3, SRGN, RUFY2, CCAR1, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, DDX21, VPS26A) 0.253016222830952 28 0.0739914194939532 0.745554725622141 1684 0.2474921278862 2 2 0 -6.88504036938739 LTS-026 chr10 71174737 73582494 2407758 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AIFM2, SGPL1) 0.259156489247678 81 0.0688487472652916 0.817018771644275 2675 0.21070514899386 2 2 0 -6.75427731448214 LTS-026 chr10 73582495 76982237 3399743 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.279466242884003 81 0.0685930835515587 0.750017465276924 3582 0.174781166259167 2 2 0 -7.34203806217445 LTS-026 chr10 76982238 76989288 7051 * VDAC2 NA 0 NA 0.88 1 NA NA NA NA NA LTS-026 chr10 76989289 82005771 5016483 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, PPIF, POLR3A, COMTD1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, ZNF503-AS1, ZMIZ1-AS1, ANXA11, KCNMA1, LINC00595, LINC00857, ZMIZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, VDAC2, TMEM254, C10orf11, ZNF503, MBL1P, DLG5) 0.295983338014198 34 0.105716353585099 0.813501322256811 2053 0.279349458632523 2 2 0 -6.78183371471054 LTS-026 chr10 82005772 82009522 3751 * character(0) NA 0 NA 0.213929200924683 39 0.316473805180969 0 NA NA -5.77661363082487 LTS-026 chr10 82009523 82009538 16 * character(0) NA 0 NA 0.075 1 NA NA NA NA NA LTS-026 chr10 82009539 89527497 7517959 * c(GRID1-AS1, MIR4678, NRG3, ADIRF, LDB3, AGAP11, DYDC1, LINC00858, WAPL, LRIT1, GHITM, GLUD1, GRID1, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00863, MIR346, CCSER2, FAM35A, RGR, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TSPAN14, FAM213A, DYDC2, ATAD1, PAPSS2, CDHR1, OPN4, MINPP1) 0.274276608847494 54 0.0926347319903794 0.777406564512202 2481 0.222186860883031 2 2 0 -7.08339324456303 LTS-026 chr10 89527498 89530687 3190 * ATAD1 NA 0 NA 0.703 1 NA NA NA NA NA LTS-026 chr10 89530688 90734228 1203541 * c(KLLN, ANKRD22, LIPJ, CFL1P1, LIPM, FAS, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, ATAD1, LIPF) 0.295919742432849 17 0.0638048495298705 0.692181137509687 837 0.161613898553626 1 1 0 -7.31155943419922 LTS-026 chr10 90734229 101910693 11176465 * c(C10orf131, PLCE1-AS1, HECTD2-AS1, DNMBP-AS1, FRAT1, MIR1287, FAS-AS1, MIR3157, SLIT1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4685, MIR5692C2, LINC00502, RPP30, SORBS1, ERLIN1, HOGA1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, NUDT9P1, ABCC2, COX15, CPN1, ACSM6, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, NKX2-3, SLC35G1, DNTT, CPEB3, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, TCTN3, C10orf12, NA NA NA NA NA NA NA NA NA LTS-026 ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, R3HCC1L, GOT1, FLJ37201, BLNK, HELLS, HHEX, HPS1, HTR7, FFAR4, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, CC2D2B, LIPA, GOLGA7B, MIR107, C10orf62, IFIT1B, EXOSC1, CUTC, PLCE1, PDE6C, PGAM1, PANK1, EXOC6, CCNJ, MARCH5, PPP1R3C, CRTAC1, CEP55, PI4K2A, TM9SF3, ENTPD7, STAMBPL1, ALDH18A1, ACTA2, RBP4, AVPI1, HPSE2, MMS19, SFRP5, NOC3L, LINC00865, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SLIT1, TLL2, ENTPD1-AS1, UBTD1, TNKS2, SLC25A28, MARVELD1, LOXL4, ZDHHC16, PCGF5, LCOR, PYROXD2, ARHGAP19, CH25H, BTAF1, PDLIM1, LGI1, OPALIN, ENTPD1, KIF20B, ZNF518A) 0.262679078877095 181 0.0763757620508762 0.806570174578723 10089 0.217862013259976 2 2 0 -6.83856735245979 LTS-026 NA NA NA NA LTS-026 chr10 101910694 116887415 14976722 * c(TLX1NB, MIR936, KCNIP2-AS1, MIR1307, MIR2110, MIR3158-1, MIR4295, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4680, MIR4483, MIR4482, ACTR1A, SMNDC1, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SORCS1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CYP17A1, CFAP58, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, CALHM1, DPCD, SEC31B, ATRNL1, PDCD4, POLL, BLOC1S2, NA NA NA NA NA NA NA NA NA LTS-026 RBM20, PDCD4-AS1, HABP2, KCNIP2, TLX1, VWA2, NHLRC2, GUCY2GP, ABLIM1, LBX1-AS1, ARL3, MXI1, NDUFB8, NFKB2, NRAP, PAX2, CALHM2, SUFU, ACSL5, PITX3, CNNM2, WBP1L, CCDC186, CWF19L1, HIF1AN, SLF2, TDRD1, PSD, C10orf2, AS3MT, MIR146B, GPAM, FAM160B1, SEMA4G, SCD, ZDHHC6, RPL13AP6, FBXW4, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 PLEKHS1, PDZD7, OBFC1, CFAP43, SHOC2, TRIM8, KAZALD1, SFXN3, ELOVL3, CASP7, PCGF6, LZTS2, MRPL43, AFAP1L2, USMG5, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, SMC3, NEURL1, NOLC1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.258855292127127 153 0.0790351653477179 0.779008252995725 11209 0.210986268862641 2 2 0 -7.42709875317039 LTS-026 NA NA NA NA LTS-026 chr10 116887416 119305334 2417919 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.24847961006066 16 0.107370833252487 0.860545835934201 1492 0.223117390050694 2 2 0 -6.79877345841038 LTS-026 chr10 119305335 119307573 2239 * EMX2 NA 0 NA 0.558 1 NA NA NA NA NA LTS-026 chr10 119307574 121652470 2344897 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.296032140531518 22 0.0462083789557077 0.649313271603925 1531 0.428402252193711 2 2 0 -7.3411858450386 LTS-026 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 0.794 1 NA NA NA NA NA LTS-026 chr10 121657875 128077071 6419197 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, FANK1-AS1, TACC2, ATE1, SEC23IP, BTBD16, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, HTRA1, BCCIP, PLEKHA1, LHPP, IKZF5, UROS, C10orf88, NA NA NA NA NA NA NA NA NA LTS-026 ADAM12, BUB3, FANK1, FAM53B) 0.311872819270134 109 0.0926306242655088 0.706382196476479 4105 0.199687423302196 1 1 0 -7.69724965854845 LTS-026 NA NA NA NA LTS-026 chr10 128077072 134190064 6112993 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, LINC00959, FOXI2, LINC01164, MGMT, MKI67, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12) 0.263642642167438 87 0.0521598154832145 0.841136195367528 2060 0.298406296666475 2 2 0 -6.75142411209762 LTS-026 chr10 134190065 134691597 501533 * c(C10orf91, PWWP2B, INPP5A, CFAP46, LRRC27, NKX6-2) 0.346250676057086 7 0.0748341022338269 0.948100353696604 398 0.249223769693475 4 3 1 -7.0096287110953 LTS-026 chr10 134691598 134692910 1313 * CFAP46 NA 0 NA 0.584 1 NA NA NA NA NA LTS-026 chr10 134692911 134756359 63449 * CFAP46 0.306013975543128 8 0.0571007880856298 0.505570236006406 177 0.358933850882295 2 2 0 -7.03360656548546 LTS-026 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.135 1 NA NA NA NA NA LTS-026 chr10 134884462 135381885 497424 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.255960533090995 16 0.113594527450343 0.897524490749131 1345 0.31388762180784 2 2 0 -6.76155019166414 LTS-026 chr10 135381886 135473116 91231 * c(SPRNP1, FRG2B, SYCE1) NA 0 NA 0.796689153764868 36 0.344466193885784 2 NA NA -5.76511721566243 LTS-026 chr11 193025 193096 72 * SCGB1C1 0.23 1 NA 0.507 1 NA NA NA NA NA LTS-026 chr11 193097 1016957 823861 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.279434864681504 110 0.0784179389188909 0.785118166061321 2962 0.24661599588599 2 2 0 -6.7650736489595 LTS-026 chr11 1016958 1017029 72 * MUC6 0.48 1 NA 0.991991063927906 6 0.300440121599407 3 3 0 -5.76441047659954 LTS-026 chr11 1017030 1024103 7074 * MUC6 0.338991417225232 26 0.0783892457302266 0.819699492179039 94 0.227895495813597 4 3 1 -6.74617344460862 LTS-026 chr11 1024104 1024832 729 * MUC6 NA 0 NA 0.992 1 NA NA NA NA NA LTS-026 chr11 1024833 1213556 188724 * c(MUC2, MUC6, MUC5B) 0.363504619678585 28 0.0976400567791247 0.877284332545664 464 0.246032837980674 3 2 1 -6.85760829196702 LTS-026 chr11 1213557 1215580 2024 * MUC5B 0.305 1 NA 0.887357043548756 25 0.0869001726120265 2 2 0 -5.76516710740436 LTS-026 chr11 1215581 1563690 348110 * c(TOLLIP-AS1, TOLLIP, MUC5B, MOB2, BRSK2) 0.274623578547235 39 0.0445544292522293 0.899874062664775 726 0.232618066727795 2 2 0 -6.76565644338749 LTS-026 chr11 1563691 1575235 11545 * MOB2 NA 0 NA 0.547 1 NA NA NA NA NA LTS-026 chr11 1575236 4471625 2896390 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, OR52K2, OR52B4, CTSD, DUSP8, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, MRPL23, NA NA NA NA NA NA NA NA NA LTS-026 MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, MOB2, CARS, SYT8, CD81) 0.264677944515534 88 0.0610162456740387 0.799814196319234 3032 0.206479368438957 2 2 0 -6.7878276409957 LTS-026 NA NA NA NA LTS-026 chr11 4471626 4496354 24729 * character(0) NA 0 NA 1.17 1 NA NA NA NA NA LTS-026 chr11 4496355 4968142 471788 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, OR51G1, OR51G2, OR51E2) 0.295065758994893 8 0.0361425748153852 0.883612176148507 642 0.227071728345929 2 2 0 -7.03070650702233 LTS-026 chr11 4968143 5009631 41489 * c(OR51A4, OR51A2, MMP26) NA 0 NA 0.393141999907049 39 0.242672021155204 0 NA NA -5.77146443805081 LTS-026 chr11 5009632 5010830 1199 * MMP26 NA 0 NA 1.047 1 NA NA NA NA NA LTS-026 chr11 5010831 8285440 3274610 * c(TRIM22, TRIM3, PRKCDBP, TRIM6, OR52E2, OR52J3, OR51L1, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, UBQLNL, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, OR52A1, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR51B5, OR51V1, OR10A4, OLFML1, LOC283299, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR52B6, OR10A2, OVCH2, ILK, OR56B1, NA NA NA NA NA NA NA NA NA LTS-026 GVINP1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, TRIM6-TRIM34, UBQLN3, CYB5R2, TRIM34, MMP26, MRPL17, SMPD1, TAF10, TUB, ZNF214, ZNF215, OR51B4, OR51B2, OR52N1, RIC3, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR) 0.270378943848124 181 0.0435805245953104 0.841591466594488 5321 0.293342040644141 2 2 0 -6.73867574628542 LTS-026 NA NA NA NA LTS-026 chr11 8285441 8289914 4474 * LMO1 NA 0 NA 0.788 1 NA NA NA NA NA LTS-026 chr11 8289915 14913847 6623933 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, LYVE1, CYP2R1, COPB1, ADM, EIF4G2, RRAS2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, LMO1, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, PDE3B, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, LOC644656, RASSF10, STK33, ST5, SNORA23, SNORA3B, SNORD97, TEAD1, NA NA NA NA NA NA NA NA NA LTS-026 ZBED5-AS1, WEE1, ZNF143, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9, TRIM66) 0.257494216944178 87 0.0640151428891051 0.776819886488095 4896 0.253089757785974 2 2 0 -7.00288653283058 LTS-026 NA NA NA NA LTS-026 chr11 14913848 14989129 75282 * CALCA NA 0 NA 0.914 1 NA NA NA NA NA LTS-026 chr11 14989130 17804142 2815013 * c(USH1C, OR7E14P, C11orf58, PLEKHA7, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, MYOD1, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8, CALCA, CALCB) 0.262910213059018 41 0.070977246439934 0.847439197146145 2165 0.482961316495602 2 2 0 -6.74275077059488 LTS-026 chr11 17804143 17804219 77 * KCNC1 NA 0 NA 0.823 1 NA NA NA NA NA LTS-026 chr11 17804220 19247405 1443186 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, KCNC1, LDHA, LDHC, LOC494141, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, E2F8, CSRP3, PTPN5) 0.278392165165442 47 0.0893143996209372 0.76429014894353 1801 0.19805569547033 2 2 0 -6.87861147494463 LTS-026 chr11 19247406 31828115 12580710 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, DBX1, DNAJC24, ARL14EP, MUC15, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, GAS2, ELP4, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, PAX6, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.268409516129629 109 0.0613040499831986 0.850789085092597 3960 0.224122829259854 2 2 0 -6.83752437387808 LTS-026 chr11 31828116 31837960 9845 * PAX6 NA 0 NA 0.433 1 NA NA NA NA NA LTS-026 chr11 31837961 34168153 2330193 * c(C11orf91, HIPK3, EIF3M, CSTF3, KIAA1549L, FBXO3, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, WT1, PRRG4, QSER1, DEPDC7, CD59) 0.285434348900139 15 0.0482973922198507 0.789115327923907 2109 0.185971469762257 2 2 0 -6.88788000598198 LTS-026 chr11 34168154 34168157 4 * NAT10 NA 0 NA 0.820723585175887 2 0.0806101730552664 2 NA NA -5.76441015928944 LTS-026 chr11 34168158 34168235 78 * NAT10 NA 0 NA 1.298 1 NA NA NA NA NA LTS-026 chr11 34168236 34168446 211 * NAT10 0.378 1 NA 1.39761392162724 13 0.390629275361219 5 5 0 -5.76441013739911 LTS-026 chr11 34168447 36253195 2084749 * c(MIR3973, MIR1343, LDLRAD3, ELF5, FJX1, ABTB2, PAMR1, EHF, APIP, TRIM44, NAT10, SLC1A2, PDHX, CAT, CD44) 0.427249205036593 19 0.0345278936310411 0.996622902201296 1348 0.402349993434909 2 1 1 -6.9917624897953 LTS-026 chr11 36253196 36253297 102 * character(0) 0.052 1 NA 0.854123812729833 2 0.482953931550412 2 2 0 -5.76441037569058 LTS-026 chr11 36253298 36485191 231894 * c(COMMD9, PRR5L) 0.329767826003712 10 0.199729511534419 1.0908760535362 180 0.689751548460279 4 3 1 -6.73834425219698 LTS-026 chr11 36485192 36508620 23429 * c(TRAF6, PRR5L) 0.453 1 NA 0.983471013971064 35 0.191483338459415 3 3 0 -5.76489442512985 LTS-026 chr11 36508621 36523144 14524 * TRAF6 0.464 1 NA 0.93100165293387 110 0.229398243880039 3 3 0 -5.7657621526329 LTS-026 chr11 36523145 36594800 71656 * c(RAG1, TRAF6) NA 0 NA 1.096 1 NA NA NA NA NA LTS-026 chr11 36594801 47447816 10853016 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, ALX4, SPI1, SNORD67, SEC14L1P1, NA NA NA NA NA NA NA NA NA LTS-026 C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.457500953623526 78 0.0599039593765249 1.09435881514637 4751 0.247865846981233 3 2 1 -7.73508556221854 LTS-026 NA NA NA NA LTS-026 chr11 47447817 47611152 163336 * c(CELF1, PTPMT1, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.408904058730683 6 0.0228706507705108 0.980483702667441 320 0.181747017472391 3 2 1 -6.8260744202771 LTS-026 chr11 47611153 47640349 29197 * c(C1QTNF4, MTCH2) 0.024 1 NA 0.95618856080083 63 0.262179305482424 3 3 0 -5.76544327576635 LTS-026 chr11 47640350 48238767 598418 * c(OR4B1, NUP160, FNBP4, MTCH2, PTPRJ, AGBL2) 0.382330300425212 12 0.0870927753326963 1.00352241976462 720 0.24265193103558 3 2 1 -6.75919898734692 LTS-026 chr11 48238768 48346419 107652 * c(OR4X2, OR4B1, OR4S1, OR4X1) 0.473473143949632 7 0.0226558097247861 1.31345637420003 93 1.99200913105691 4 2 2 -8.34844405818376 LTS-026 chr11 48346420 48346423 4 * character(0) 0.353 1 NA 1.874 1 NA NA NA NA NA LTS-026 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.334919337461492 96 0.0710985902776819 1.90309426652993 176 1.01951252770912 10 7 3 -6.73490881292569 LTS-026 chr11 48387984 48387985 2 * character(0) NA 0 NA 1.106 1 NA NA NA NA NA LTS-026 chr11 48387986 51526755 3138770 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.387513541008845 25 0.06866165839341 1.19344227047217 477 0.49434577550403 3 2 1 -6.93934671818039 LTS-026 chr11 51526756 51527703 948 * character(0) NA 0 NA 1.12419050488063 5 0.0786148840869208 4 NA NA -5.76490319097807 LTS-026 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.475 1 NA 0.962090427877353 21 0.327865114541534 3 3 0 -5.76580991054837 LTS-026 chr11 55111585 56043702 932118 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.450654354094991 23 0.0806276514715527 1.21643571903512 647 0.307376320954457 4 2 2 -6.76979287870688 LTS-026 chr11 56043703 56043790 88 * OR5T1 NA 0 NA 1.071 1 NA NA NA NA NA LTS-026 chr11 56043791 56086147 42357 * c(OR8H1, OR8K3, OR5T1) 0.414 1 NA 1.05436933975199 37 0.19105197946857 3 3 0 -5.76521804220019 LTS-026 chr11 56086148 56113516 27369 * c(OR8K3, OR8K1) 0.37 1 NA 1.04949002172226 17 0.101167013921942 3 3 0 -5.76579925889292 LTS-026 chr11 56113517 56956561 843045 * c(OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR9G4, OR5AP2, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9) 0.316641465630126 43 0.0863957773464659 1.04744146406183 512 0.383309217171579 4 3 1 -6.85417817997452 LTS-026 chr11 56956562 61185204 4228643 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, PTGDR2, CNTF, CTNND1, DDB1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, MS4A2, ZP1, DTX4, MS4A6E, ZDHHC5, TKFC, TIMM10, GIF, PRPF19, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, NA NA NA NA NA NA NA NA NA LTS-026 OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, TMEM132A, VPS37C, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, SSRP1, STX3, TCN1, SERPING1, TMEM109, CCDC86, CPSF7, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, CD5, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN) 0.340318765487566 88 0.0890729069842266 0.932148386691421 5662 0.257012964753534 3 2 1 -7.28203249949179 LTS-026 NA NA NA NA LTS-026 chr11 61185205 61196790 11586 * CPSF7 0.416 1 NA 0.856711126536348 59 0.164092855496559 2 2 0 -5.76469954055531 LTS-026 chr11 61196791 61675675 478885 * c(MIR1908, MIR4488, RPLP0P2, PPP1R32, FEN1, DKFZP434K028, LRRC10B, FADS1, FADS3, SDHAF2, RAB3IL1, MIR611, MYRF, TMEM258, DAGLA, CPSF7, SYT7, FADS2) 0.352117200049726 40 0.0477552453824547 0.930739099597263 1264 0.208503412702363 4 3 1 -7.18335921948396 LTS-026 chr11 61675676 65233774 3558099 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, TAF6L, SCGB1D2, SCGB1D1, EHD1, STIP1, PLA2G16, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, HRASLS5, COX8A, C11orf84, GPHA2, EEF1G, MARK2, ESRRA, FAU, TIGD3, LRRN4CL, HNRNPUL2, FKBP2, ATG2A, GANAB, SNHG1, POLA2, FLRT1, FTH1, EML3, PRDX5, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, MAJIN, SLC25A45, NEAT1, NA NA NA NA NA NA NA NA NA LTS-026 CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, DNAJC4, INCENP, TMEM179B, SLC22A25, SLC22A10, SPDYC, ARL2, SCGB1D4, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, SLC22A20, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, PYGM, RAB3IL1, MAP4K2, RARRES3, DPF2, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 BEST1, METTL12, SF1, ZFPL1, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, INTS5, CAPN1, FERMT3, TRPT1, FRMD8, NUDT22, SYVN1, LGALS12, RPS6KA4, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2) 0.346915833325464 84 0.0998969944248742 0.884981517037379 8501 0.277951446534631 2 2 0 -7.1867967892198 LTS-026 NA NA NA NA LTS-026 chr11 65233775 65265224 31450 * character(0) NA 0 NA 0.592 1 NA NA NA NA NA LTS-026 chr11 65265225 65293245 28021 * c(MALAT1, SCYL1) NA 0 NA 0.709710432467345 189 0.137680382024024 1 NA NA -5.77447244180615 LTS-026 chr11 65293246 65293333 88 * SCYL1 NA 0 NA 0.977 1 NA NA NA NA NA LTS-026 chr11 65293334 66701889 1408556 * c(RBM14-RBM4, MIR4489, MIR4690, DPP3, KCNK7, RBM14, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, FAM89B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, TMEM151A, BRMS1, NPAS4, EFEMP2, SLC29A2, PCNX3, LTBP3, MAP3K11, OVOL1, PC, CCDC87, PACS1, CD248, SCYL1, BBS1, RBM4, RELA, KLC2, SIPA1, MRPL11, SPTBN2, LRFN4, C11orf80, MUS81, FOSL1, RAB1B, C11orf68, NA NA NA NA NA NA NA NA NA LTS-026 RBM4B, RNASEH2C, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, AP5B1, FIBP, RIN1, CCS, RCE1) 0.37071368999114 80 0.0854396818843933 0.889078677399423 4754 0.194846685823295 2 1 1 -7.123837641051 LTS-026 NA NA NA NA LTS-026 chr11 66701890 66744499 42610 * c(C11orf86, PC) NA 0 NA 0.821179881587422 31 0.144711429574386 2 NA NA -5.76450629398577 LTS-026 chr11 66744500 66797534 53035 * SYT12 NA 0 NA 1.572 1 NA NA NA NA NA LTS-026 chr11 66797535 66807561 10027 * SYT12 0.282 1 NA 1.57227726480254 15 0.256205219083676 6 6 0 -5.76442259878828 LTS-026 chr11 66807562 72145411 5337850 * c(LOC100129216, LOC100130987, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4691, IL18BP, SHANK2-AS1, CDK2AP2, TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, GRK2, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FOLR1, FOLR2, FOLR3, CLCF1, DEFB108B, NUDT8, ANAPC15, MYEOV, ALG1L9P, GSTP1, RHOD, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, KRTAP5-9, KRTAP5-10, GPR152, NA NA NA NA NA NA NA NA NA LTS-026 DOC2GP, FLJ42102, PHOX2A, LRP5, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, CABP4, CORO1B, CARNS1, POLD4, KRTAP5-8, PTPRCAP, RAD9A, CCND1, RPS6KB2, FAM86C2P, TMEM134, CLPB, UNC93B1, PPFIA1, FADD, AIP, SYT12, ACY3, PITPNM1, TESMIN, FGF19) 0.283744370946781 97 0.0708171090171949 1.49998914309816 5834 0.349198140432117 5 4 1 -6.87243971094524 LTS-026 NA NA NA NA LTS-026 chr11 72145412 73806493 1661082 * c(MIR4692, STARD10, ARAP1, FAM168A, C2CD3, DNAJB13, MIR139, P2RY2, P2RY6, COA4, PDE2A, MRPL48, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1, CLPB, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.259870469291437 30 0.0635874002555881 1.61991904784178 1909 0.421743519242609 6 5 1 -6.73493384629077 LTS-026 chr11 73806494 73809080 2587 * C2CD3 NA 0 NA 1.179 1 NA NA NA NA NA LTS-026 chr11 73809081 89486832 15677752 * c(KCNE3, MIR708, KCTD21-AS1, SNORA70E, MIR4300, RAB30-AS1, LOC100506368, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, GRM5-AS1, POLD3, CTSC, NEU3, ME3, PRSS23, SLCO2B1, SNORD15B, CLNS1A, XRRA1, DLG2, B3GNT6, FOLH1B, GDPD4, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, GRM5, ANKRD42, OR2AT4, LIPT2, GUCY2EP, NA NA NA NA NA NA NA NA NA LTS-026 TRIM77, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, NOX4, PAK1, PPME1, HIKESHI, PCF11, RSF1, SYTL2, ACER3, PRCP, TMEM126B, THAP12, EMSY, USP35, CREBZF, CCDC90B, CCDC81, SNORD15A, RPS3, TMEM135, KCTD14, THRSP, CAPN5, TYR, UVRAG, WNT11, ALG8, NARS2, MOGAT2, GDPD5, PICALM, FZD4, TMEM126A, DGAT2, OR7E2P, SERPINH1, EED, INTS4, SPCS2, GAB2) 0.296246552463638 202 0.0531012371988606 1.46848438257126 8781 0.390041391560722 5 4 1 -6.8702209145363 LTS-026 NA NA NA NA LTS-026 chr11 89486833 89486855 23 * character(0) NA 0 NA 1.014 1 NA NA NA NA NA LTS-026 chr11 89486856 89608204 121349 * c(TRIM49, TRIM64B) 0.279 1 NA 0.748648375901588 46 0.899749719628194 2 2 0 -5.76533377579491 LTS-026 chr11 89608205 89707604 99400 * c(TRIM64, TRIM64B) NA 0 NA 7.021 1 NA NA NA NA NA LTS-026 chr11 89707605 92715426 3007822 * c(NAALAD2, MIR4490, FAT3, CHORDC1, MTNR1B, TRIM49C, UBTFL1) 0.288676378232907 16 0.0665101496013954 1.66755381754951 801 0.546089006049462 6 5 1 -6.85258351116523 LTS-026 chr11 92715427 92715508 82 * MTNR1B NA 0 NA 1.526 1 NA NA NA NA NA LTS-026 chr11 92715509 96125939 3410431 * c(MIR1304, MIR1260B, GPR83, SLC36A4, FAM76B, SESN3, PIWIL4, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, C11orf54, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, MTNR1B, CWC15, ANKRD49, KDM4D, SMCO4, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CCDC82, MAML2, CEP295, JRKL, MTMR2, MED17, CEP57) 0.300426663009662 61 0.0620771466092598 1.48883911617991 3037 0.338336768470081 5 4 1 -6.8030072984371 LTS-026 chr11 96125940 99690428 3564489 * c(JRKL-AS1, CNTN5, JRKL) 0.299 1 NA 1.97415484325526 23 0.452111300963046 8 8 0 -5.76442464990437 LTS-026 chr11 99690429 100860599 1170171 * c(ARHGAP42, CNTN5) 0.228 1 NA 1.99306043883023 331 0.482885026505879 8 8 0 -5.7647554143462 LTS-026 chr11 100860600 105484780 4624181 * c(WTAPP1, MIR3920, CASP12, MIR4693, LOC101054525, YAP1, CARD16, TMEM123, ARHGAP42, ANGPTL5, GRIA4, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, PGR, CEP126, CARD18, MMP27, LOC643733, TRPC6, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, C11orf70, MMP20) 0.225671310509172 57 0.0324507531260234 1.87412114053346 2848 0.457603982230903 7 6 1 -6.79440346030022 LTS-026 chr11 105484781 105484946 166 * GRIA4 NA 0 NA 1.236 1 NA NA NA NA NA LTS-026 chr11 105484947 105783699 298753 * GRIA4 0.316897617909563 2 0.00707106781186552 1.49034489524589 62 0.277763602223642 11 8 3 -7.55177903647649 LTS-026 chr11 105783700 105842740 59041 * GRIA4 0.173 1 NA 1.29220129847454 35 0.291061999228615 4 4 0 -5.76623370774004 LTS-026 chr11 105842741 110697388 4854648 * c(KBTBD3, CWF19L2, KDELC2, C11orf65, DDX10, FDX1, EXPH5, GRIA4, GUCY1A2, ACAT1, C11orf87, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, ARHGAP20, RDX, AASDHPPT, LOC643923, SLN, CUL5, MSANTD4, ZC3H12C, ALKBH8) 0.150375309849327 47 0.059632175037663 1.3386545036179 2984 0.415476579205625 5 5 0 -6.78193311747357 LTS-026 chr11 110697389 111152050 454662 * C11orf53 NA 0 NA 1.01 1 NA NA NA NA NA LTS-026 chr11 111152051 113073190 1921140 * c(LOC100132078, HSPB2-C11orf52, MIR4491, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, SIK2, TIMM8B, HSPB2, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, POU2AF1, BTG4, PPP2R1B, C11orf57, TEX12, PTS, SDHD, C11orf1, ALG9, BCO2, DIXDC1, FDXACB1) 0.233839028488556 16 0.0374423445669027 0.948211668036222 1857 0.190615721478505 3 3 0 -6.97921883027841 LTS-026 chr11 113073191 113074962 1772 * NCAM1 NA 0 NA 1.439 1 NA NA NA NA NA LTS-026 chr11 113074963 113320875 245913 * c(NCAM1-AS1, MIR4301, DRD2, ANKK1, NCAM1, TTC12) 0.14549504558655 21 0.0407480060861878 1.45809478869642 464 0.499969851920281 6 6 0 -6.7458328864496 LTS-026 chr11 113320876 113558281 237406 * c(DRD2, TMPRSS5) NA 0 NA 0.947 1 NA NA NA NA NA LTS-026 chr11 113558282 114421769 863488 * c(RBM7, NXPE1, REXO2, HTR3A, NNMT, C11orf71, USP28, CLDN25, ZBTB16, TMPRSS5, HTR3B, ZW10) 0.252088619462858 28 0.077366055953219 0.871327614876456 901 0.234611214229835 2 2 0 -6.78892530976878 LTS-026 chr11 114421770 114421773 4 * NXPE1 0.433 1 NA 1.761 1 NA NA NA NA NA LTS-026 chr11 114421774 115375702 953929 * c(NXPE1, NXPE2, CADM1, NXPE4) 0.36905026609731 14 0.138572867331378 0.892845495179046 275 0.208286099432937 2 1 1 -6.92236112747482 LTS-026 chr11 116618915 119244259 2625345 * c(LOC100131626, BACE1-AS, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, CEP164, PHLDB1, SIK3, BACE1, SLC37A4, RNF214, HINFP, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, NA NA NA NA NA NA NA NA NA LTS-026 RPL23AP64, TAGLN, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.378151679599144 119 0.0875155061850028 1.08352028403356 6333 0.394617822785929 3 2 1 -6.80817807998968 LTS-026 NA NA NA NA LTS-026 chr11 119244260 119251407 7148 * USP2 NA 0 NA 2.194 1 NA NA NA NA NA LTS-026 chr11 119251408 122165806 2914399 * c(USP2-AS1, TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, NECTIN1, SC5D, LOC649133, SORL1, TECTA, THY1, USP2) 0.312892632075425 39 0.0503453659282098 1.45770141051399 2083 0.419506651736408 5 4 1 -6.81741180251089 LTS-026 chr11 122165807 122172271 6465 * MIR100HG NA 0 NA 1.89493898573707 5 0.731816370409955 8 NA NA -5.7644215920935 LTS-026 chr11 122172272 122172312 41 * MIR100HG NA 0 NA 1.173 1 NA NA NA NA NA LTS-026 chr11 122172313 122682156 509844 * c(MIR100HG, UBASH3B) 0.445 1 NA 0.888621039531118 115 0.187268923971874 2 2 0 -5.80691475260124 LTS-026 chr11 122682157 128556839 5874683 * c(PATE3, MIR3167, MIR4493, KIRREL3-AS2, CHEK1, TIRAP, PANX3, PATE1, ETS1, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, HEPACAM, FLI1, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, DDX25, HSPA8, TMEM225, OR8D4, LOC341056, STT3A, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, PATE4, ST3GAL4-AS1, VWA5A, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, NA NA NA NA NA NA NA NA NA LTS-026 SCN3B, ACRV1, CRTAM, GRAMD1B, PKNOX2, HEPN1, ROBO3, ST3GAL4, SRPRA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, UBASH3B, ESAM, EI24, FEZ1) 0.429525501087797 141 0.0882501372659382 0.999591717951445 4847 0.421541897661059 3 2 1 -6.80660141848082 LTS-026 NA NA NA NA LTS-026 chr11 128556840 128563868 7029 * c(SENCR, FLI1) NA 0 NA 0.552 1 NA NA NA NA NA LTS-026 chr11 128563869 134181101 5617233 * c(LOC100128239, SENCR, ADAMTS8, VPS26B, GLB1L3, TMEM45B, ADAMTS15, C11orf45, SPATA19, IGSF9B, FLI1, NCAPD3, ACAD8, C11orf44, MIR4697HG, ZBTB44, THYN1, APLP2, KCNJ1, KCNJ5, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, TP53AIP1, ST14, JAM3, BARX2, ARHGAP32) 0.418056368531169 74 0.0658306829879371 1.20232692367604 3424 0.315508585548174 4 2 2 -6.7562694711698 LTS-026 chr11 134181102 134856681 675580 * c(GLB1L3, B3GAT1, LOC283177, GLB1L2) NA 0 NA 1.21907798689011 183 0.281342675424174 4 NA NA -5.76472138809927 LTS-026 chr12 90923 248071 157149 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.433 1 NA 1.21634106527917 46 0.338700144556664 4 4 0 -5.76443544015595 LTS-026 chr12 248072 6232426 5984355 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, IQSEC3, NDUFA9, NINJ2, NTF3, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CCDC77, NA NA NA NA NA NA NA NA NA LTS-026 CRACR2A, DYRK4, CCND2, CACNA2D4) 0.411861740751886 138 0.0792661998255411 1.36235718076048 5389 0.618665684058145 5 3 2 -6.74301355453194 LTS-026 NA NA NA NA LTS-026 chr12 6232427 6344600 112174 * c(VWF, CD9) 0.472 1 NA 1.29733909880208 33 0.161670475978239 4 4 0 -5.77700724297433 LTS-026 chr12 6344601 6427676 83076 * c(PLEKHG6, CD9) 0.455738856413694 3 0.05844940832321 1.35199876858959 91 0.216066580092728 4 2 2 -6.8544733249853 LTS-026 chr12 6427677 7281317 853641 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD27, NCAPD2) 0.438837133775298 54 0.0685730086275147 1.20630205637806 3130 0.259323534642265 4 2 2 -6.74155150302478 LTS-026 chr12 7281318 7287914 6597 * c(RBP5, CLSTN3) 0.42 1 NA 1.30091350341137 49 0.321011235684009 4 4 0 -5.76461349215544 LTS-026 chr12 7287915 9590665 2302751 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3, CLSTN3) 0.387642727008376 72 0.120623056472379 1.21186080302636 2786 0.361747965225478 4 2 2 -6.80851284259763 LTS-026 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 2.139 1 NA NA NA NA NA LTS-026 chr12 9633155 9717935 84781 * character(0) NA 0 NA 2.19514908312381 93 0.479314941345174 9 NA NA -5.76446020274297 LTS-026 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.824 1 NA NA NA NA NA LTS-026 chr12 9747241 10375253 628013 * c(KLRF2, TMEM52B, CLEC12A, CLECL1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, CD69, CLEC2B) 0.428601021933504 12 0.135679742129186 1.1236307191596 920 0.267202600273009 4 2 2 -6.76172745869109 LTS-026 chr12 10375254 10573279 198026 * c(KLRC4-KLRK1, KLRK1, GABARAPL1, KLRC3, KLRD1, KLRC4) 0.311152966514031 7 0.108908874097306 1.37264941406106 177 0.401967063205947 5 4 1 -6.74520719682853 LTS-026 chr12 10573280 10574832 1553 * KLRC3 NA 0 NA 3.137 1 NA NA NA NA NA LTS-026 chr12 10574833 10588456 13624 * c(KLRC2, KLRC3) 0.388951416947046 7 0.0307021016808141 2.32224848206199 55 0.765605878775863 16 10 6 -6.73731846356531 LTS-026 chr12 10588457 11150054 561598 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.403937650164681 16 0.0511336484127624 1.36827388440403 650 0.383023461554848 5 3 2 -6.7757522455107 LTS-026 chr12 11150055 11174202 24148 * c(PRH1-PRR4, TAS2R20, PRB4) 0.27 1 NA 1.33373690171172 9 0.240648833595991 5 5 0 -5.76500112695123 LTS-026 chr12 11174203 11548436 374234 * c(SMIM10L1, PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R42, PRB1, PRB3, PRB4, PRB2) 0.253846114353107 44 0.0558456230623492 1.69946654748561 254 0.59902510640385 6 5 1 -6.74415895767164 LTS-026 chr12 11548437 11904752 356316 * c(ETV6, LINC01252, PRB2) 0.413 1 NA 1.54624616453103 17 0.242196338074032 6 6 0 -5.76733941658327 LTS-026 chr12 11904753 18435215 6530463 * c(LOC100506314, MIR3974, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, PIK3C2G, MANSC1, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.383830790852084 60 0.0651908519283284 1.4378247545298 3416 0.343423660016652 5 3 2 -6.91165782696735 LTS-026 chr12 18435216 22016005 3580790 * c(LOC100506393, ABCC9, SLCO1B1, AEBP2, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, GOLT1B, PDE3A, PIK3C2G, SLCO1C1, PLEKHA5, RECQL, SLCO1A2, PYROXD1, SPX, PLCZ1, CAPZA3) 0.439561840907397 61 0.0884338349807296 1.30500205310645 1999 0.363622184337489 4 2 2 -6.8312588891097 LTS-026 chr12 22016006 32903842 10887837 * c(MIR920, MANSC4, LINC00941, MIR4302, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, RASSF8, FGD4, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, SMCO2, OVCH1, ITPR2, KRAS, REP15, LRMP, H3F3C, TSPAN11, YARS2, ERGIC2, TM7SF3, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, CMAS, ARNTL2, PTHLH, KLHL42, FAM60A, BCAT1, MRPS35, BICD1, ST8SIA1, NA NA NA NA NA NA NA NA NA LTS-026 CAPRIN2, SOX5, C12orf71, BHLHE41, FLJ13224, SSPN, TMTC1, PPFIBP1, MED21, C2CD5) 0.411192645209207 112 0.0926788229390308 1.21431619751953 6001 0.781053844057148 4 2 2 -6.75961973094412 LTS-026 NA NA NA NA LTS-026 chr12 32903843 32905726 1884 * YARS2 NA 0 NA 2.103 1 NA NA NA NA NA LTS-026 chr12 32905727 33030995 125269 * c(YARS2, PKP2) 0.384225226177074 6 0.175702779336773 1.47374972453154 131 0.484544065831207 6 4 2 -6.73574474406264 LTS-026 chr12 33030996 34182671 1151676 * c(SYT10, PKP2, ALG10) NA 0 NA 1.40959041268536 186 0.380520155476958 5 NA NA -5.76462490412079 LTS-026 chr12 38710341 38710819 479 * ALG10B 0.5 1 NA 0.654912640534728 7 0.174774957343109 1 1 0 -5.76441660391862 LTS-026 chr12 38710820 46581976 7871157 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ALG10B, CPNE8, ANO6, ARID2, ABCD2, C12orf40, GXYLT1, PDZRN4, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, KIF21A, TWF1, RNY5, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, SCAF11) 0.401559353011523 51 0.108555857131926 0.818696725338114 4113 0.213646408458922 2 1 1 -6.79054263794283 LTS-026 chr12 46581977 51851246 5269270 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, ASIC1, ATF1, SLC11A2, DHH, NA NA NA NA NA NA NA NA NA LTS-026 FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, DDX23, SLC4A8, DAZAP2) 0.445466994282744 118 0.080739017858657 0.772571623502964 8484 0.803132290488624 2 1 1 -6.77691876274711 LTS-026 NA NA NA NA LTS-026 chr12 51851247 53241771 1390525 * c(KRT71, KRT74, KRT72, KRT80, GRASP, KRT78, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, ANKRD33, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, ATG101, SCN8A, ACVR1B, KRT75, ACVRL1, SLC4A8) 0.441037833754888 84 0.0851298660321295 0.831089868002083 2616 0.221017044489547 2 1 1 -6.74205400515014 LTS-026 chr12 53241772 58351065 5109294 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, LOC100506844, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, KRT78, DTX3, METTL7B, EIF4B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, TNS2, NA NA NA NA NA NA NA NA NA LTS-026 CBX5, SMUG1, STAC3, OR6C74, OR6C3, B4GALNT1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, IGFBP6, INHBC, ITGA5, ITGA7, ITGB7, KIF5A, KRT8, KRT18, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MIR26A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, CSAD, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, PIP4K2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 AAAS, INHBE, PYM1, SARNP, SOAT2, ZC3H10, SPRYD3, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, TIMELESS, LACRT, ATP23, MARCH9, COQ10A, CD63, ESPL1, TESPA1, ZBTB39, PAN2) 0.428671724062605 151 0.104145036836 0.77638142376619 12459 0.271877218267883 2 1 1 -6.90341637582579 LTS-026 NA NA NA NA LTS-026 chr12 58351066 68646663 10295598 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, LRIG3, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, FLJ41278, MIRLET7I, IL22, TMBIM4, AVPR1A, IL26, CAND1, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, DYRK2, SLC16A7, HELB, USP15) 0.445980891338995 78 0.0676257994499788 0.811627616625171 4259 0.301363742387944 2 1 1 -6.79222169628027 LTS-026 chr12 68646664 68646980 317 * IL22 NA 0 NA 0.736 1 NA NA NA NA NA LTS-026 chr12 68646981 69784387 1137407 * c(LOC100130075, MIR1279, SNORA70G, LOC100507250, CPSF6, CPM, LYZ, MDM2, IL22, SLC35E3, MDM1, NUP107, RAP1B, YEATS4) 0.41262222535271 16 0.112859721188149 0.725964833296796 898 0.26384850645734 2 1 1 -6.91476697543092 LTS-026 chr12 69784388 75891579 6107192 * c(MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, GLIPR1, KRR1, RAB3IP, TPH2, GLIPR1L2, BEST3, ZFC3H1, RAB21, GLIPR1L1, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.431635976545483 85 0.0866066771479581 0.814273418096933 3184 0.208108334434642 2 1 1 -6.75837940527837 LTS-026 chr12 75891580 75893993 2414 * c(GLIPR1, KRR1) NA 0 NA 1.19263042978386 42 0.267245961954872 4 NA NA -5.76441418611184 LTS-026 chr12 75893994 77158419 1264426 * c(GLIPR1, KRR1, OSBPL8, PHLDA1, ZDHHC17, NAP1L1, BBS10) 0.465939198781958 9 0.0336452076825214 0.740913811317555 715 0.187244787265945 2 1 1 -7.58717817136258 LTS-026 chr12 77158420 77245749 87330 * ZDHHC17 0.064 1 NA 0.817821922317811 111 0.167524030816181 2 2 0 -5.76472432659622 LTS-026 chr12 77245750 78225099 979350 * c(E2F7, CSRP2, ZDHHC17, NAV3) 0.472425762347913 2 0.0678822509939085 0.796723968712234 237 0.212548809678494 2 1 1 -6.97153499123597 LTS-026 chr12 78225100 78225111 12 * NAV3 NA 0 NA 0.971 1 NA NA NA NA NA LTS-026 chr12 78225112 85695562 7470451 * c(MIR1252, MIR4699, TSPAN19, TMTC2, OTOGL, CCDC59, PTPRQ, MYF5, MYF6, PPP1R12A, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3) 0.385283497110412 53 0.0733922449959413 1.04888914477048 2627 0.354210978357706 3 2 1 -6.78681569902386 LTS-026 chr12 86198314 88974497 2776184 * c(MIR548AL, TMTC3, C12orf50, MGAT4C, MKRN9P, KITLG, NTS, CEP290, C12orf29, RASSF9) 0.271101422085016 3 0.220214289575707 1.25676201470128 829 0.332414294277898 4 3 1 -6.81628914520689 LTS-026 chr12 88974498 108150549 19176052 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, BTBD11, SPIC, ANO4, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, TCP11L2, LINC01619, NA NA NA NA NA NA NA NA NA LTS-026 UTP20, POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, LOC643339, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, TMEM263, NUAK1, NR1H4) 0.336847199812601 240 0.0894894709529369 1.11034866140033 11659 0.706349786097193 4 3 1 -6.89938084885354 LTS-026 NA NA NA NA LTS-026 chr12 108150550 108168706 18157 * c(PRDM4, ASCL4) 0.422 1 NA 1.2172449374104 33 0.606400235992798 4 4 0 -5.76441130730516 LTS-026 chr12 108168707 109490686 1321980 * c(USP30-AS1, FICD, ASCL4, CMKLR1, DAO, ISCU, CORO1C, TMEM119, SSH1, SVOP, SELPLG, LOC728739, USP30, WSCD2, SART3) 0.379536726263906 18 0.0528637414812714 1.06892585611805 1225 0.233832147729929 3 2 1 -6.85496292682585 LTS-026 chr12 109490687 109491658 972 * c(USP30-AS1, USP30) NA 0 NA 1.561 1 NA NA NA NA NA LTS-026 chr12 109491659 110606959 1115301 * c(USP30-AS1, MIR4497, ALKBH2, FOXN4, MYO1H, IFT81, ACACB, MMAB, C12orf76, MVK, GLTP, TRPV4, UNG, KCTD10, TCHP, USP30, FAM222A, FAM222A-AS1, ANKRD13A, UBE3B, GIT2) 0.403360327174958 56 0.0995595755862242 1.36054943504319 2359 0.665887433375809 5 3 2 -6.7462362454687 LTS-026 chr12 110606960 110656514 49555 * IFT81 NA 0 NA 1.34669280617647 74 0.367914329322526 5 NA NA -5.76474315976457 LTS-026 chr12 110656515 110785080 128566 * c(IFT81, ATP2A2) 0 1 NA 1.11667092290799 125 0.324199358818096 4 4 0 -5.76909730412083 LTS-026 chr12 110785081 111892066 1106986 * c(LINC01405, SH2B3, ARPC3, RAD9B, FAM109A, PPTC7, CCDC63, CUX2, FAM216A, MYL2, ATP2A2, GPN3, ANAPC7, VPS29, PPP1CC, ATXN2, TCTN1, HVCN1) 0.304443582648285 6 0.0225979350089044 1.10459398848638 1372 0.255810651172993 5 4 1 -7.34179679403064 LTS-026 chr12 111892067 113266279 1374213 * c(TRAFD1, ERP29, ALDH2, RPH3A, HECTD4, MAPKAPK5-AS1, PTPN11, RPL6, ATXN2, NAA25, ACAD10, BRAP, MAPKAPK5, ADAM1A, TMEM116) 0.272008492296697 6 0.0386233953280478 1.00423428963991 1735 0.269801840639894 2 2 0 -7.12694103560078 LTS-026 chr12 113266280 113269541 3262 * RPH3A NA 0 NA 1.096 1 NA NA NA NA NA LTS-026 chr12 113269542 114793011 1523470 * c(SDS, SDSL, IQCD, DTX1, PLBD2, RPH3A, CFAP73, OAS1, OAS2, OAS3, TPCN1, LHX5, TBX5, DDX54, SLC8B1, RASAL1, RITA1, RBM19) 0.264602330848397 41 0.0414225842724096 1.07900787249561 1815 0.255512981851757 3 3 0 -7.4148841925488 LTS-026 chr12 114793012 120638512 5845501 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, RAB35, CIT, LINC00934, CCDC60, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, TMEM233, NOS1, PEBP1, TAOK3, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, C12orf49, SRRM4, RNFT2, HRK, BICDL1) 0.266980638105266 58 0.0701520882582503 0.81008771013377 3419 0.229814510671886 2 2 0 -6.76751759096639 LTS-026 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 0.692 1 NA NA NA NA NA LTS-026 chr12 120638602 123186692 2548091 * c(PXN-AS1, NRAV, CLIP1-AS1, MIR4700, CAMKK2, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, LRRC43, MORN3, GATC, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, CABP1, KNTC1, MLEC, RNF10 NA NA NA NA NA NA NA NA NA LTS-026 ) 0.271655668860412 64 0.0496709410113437 0.767000277533736 4268 0.207278399795372 2 2 0 -6.9382334339054 LTS-026 NA NA NA NA LTS-026 chr12 123186693 123200187 13495 * c(HCAR2, HCAR3) 0.476 1 NA 1.31577659246567 67 0.607074512015495 5 5 0 -5.76449502790172 LTS-026 chr12 123200188 124399113 1198926 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65) 0.257333235241401 26 0.0629970939500692 0.767699340448459 2553 0.187247197513393 2 2 0 -6.87417123793671 LTS-026 chr12 124399114 133158001 8758888 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, EP400, DHX37, FBRSL1, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.265765475971306 90 0.0673818566584624 0.848494311975849 4046 0.272262028207751 2 2 0 -6.77547317089576 LTS-026 chr12 133158002 133812039 654038 * c(ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, POLE, CHFR, FBRSL1, PXMP2, ANHX, ZNF10, ZNF140) 0.273810800902042 64 0.0616180934022127 0.785784013811966 2084 0.215840929297176 2 2 0 -6.75880397337899 LTS-026 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.569510741882314 11 0.093013293282588 1 NA NA -5.76500661250956 LTS-026 chr13 19271620 20276924 1005305 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, MPHOSPH8, TUBA3C, TPTE2) 0.312 1 NA 0.773851911494438 255 0.215115102020971 2 2 0 -5.82449813097083 LTS-026 chr13 20276925 41185340 20908416 * c(LINC00426, PAN3-AS1, MIR548F5, MIR2276, MIR4305, MINOS1P1, SACS-AS1, LINC00327, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, MIR4499, LINC00297, MTUS2-AS1, LINC00332, LINC00366, LINC00398, LINC00423, LINC00457, LINC00424, LINC00571, SPATA13-AS1, STARD13-AS, FRY, LHFP, USPL1, CDK8, SAP18, N4BP2L2, CDX2, POSTN, GJB6, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, PARP4, B3GLCT, STOML3, EEF1DP3, AMER2, USP12, NA NA NA NA NA NA NA NA NA LTS-026 MTIF3, GSX1, EEF1AKMT1, SKA3, MICU2, SPATA13, LNX2, FGF9, PDS5B, FOXO1, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, SACS, LATS2, SNORD102, NBEA, GJA3, GJB2, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, C1QTNF9, FREM2, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, NHLRC3, ANKRD20A19P, SERTM1, LINC00547, LINC00548, SMAD9, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, UFM1, ATP8A2, IL17D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 UBL3, C1QTNF9B-AS1, SOHLH2, PSPC1, TNFRSF19, SUPT20H, CENPJ, RNF17, COG6, RFC3, RFXAP, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, LINC00598, MIPEPP3, SLC7A1, BRCA2, TRPC4, CCDC169, ZMYM2, MRPL57, PROSER1, IFT88, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, ZMYM5, KL, NUP58) 0.277527502249614 256 0.0615290222002322 0.795169341935923 11206 0.321902171661816 2 2 0 -6.93942148906729 LTS-026 NA NA NA NA LTS-026 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 0.659 1 NA NA NA NA NA LTS-026 chr13 41239781 52523878 11284098 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, NA NA NA NA NA NA NA NA NA LTS-026 SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 ITM2B, MTRF1) 0.29119307818244 124 0.0502689873158317 0.71756808861029 6226 0.468761249458362 2 2 0 -7.41495560217972 LTS-026 NA NA NA NA LTS-026 chr13 52523879 52607219 83341 * c(ALG11, ATP7B, UTP14C) 0 1 NA 0.72401529844678 221 0.279555581078936 1 1 0 -5.7746411854797 LTS-026 chr13 52607220 53287009 679790 * c(MRPS31P5, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, NEK5, NEK3, VPS36, THSD1, UTP14C) 0.257147885947687 4 0.182517579062036 0.730393590932934 589 0.154415574924575 2 2 0 -6.99612332476178 LTS-026 chr13 53287010 53298046 11037 * LECT1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-026 chr13 53298047 61984728 8686682 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, DIAPH3-AS1, DIAPH3-AS2, OLFM4, LECT1, PCDH17, PCDH8, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3) 0.170582394848263 2 0.19869700551342 0.828262063357892 616 0.219232628241347 2 2 0 -6.87968237973017 LTS-026 chr13 61984729 61984781 53 * PCDH20 0.321 1 NA 2.035 1 NA NA NA NA NA LTS-026 chr13 61984782 79189158 17204377 * c(MIR3665, PCDH9-AS2, PCDH9-AS3, LINC00381, LINC00446, MYCBP2-AS1, RNF219-AS1, LINC00348, PIBF1, KLF12, KCTD12, CLN5, SLAIN1, DACH1, COMMD6, EDNRB, DIS3, MYCBP2, FBXL3, OR7E156P, LINC00550, LINC00347, LMO7, MZT1, PCDH9, POU4F1, KLHL1, ATXN8OS, CTAGE11P, PCDH20, KLF5, BTF3P11, LMO7DN, ACOD1, UCHL3, RNF219, BORA, SCEL, TBC1D4) 0.223732562791395 39 0.0622515574926155 0.952449841050132 3111 0.318116154088819 3 3 0 -7.16891874843335 LTS-026 chr13 79189159 80910208 1721050 * c(RBM26-AS1, LINC00331, NDFIP2-AS1, RNF219-AS1, SPRY2, NDFIP2, RBM26, RNF219) 0.222970745763727 9 0.0688466492366267 0.785115126768252 312 0.215095759975112 2 2 0 -7.06486887216823 LTS-026 chr13 80910209 80910269 61 * SPRY2 NA 0 NA 1.372 1 NA NA NA NA NA LTS-026 chr13 80910270 108183591 27273322 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00443, LINC00559, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, SOX21, SLITRK1, METTL21EP, RNF113B, LINC00410, LINC00343, GPR180, DCT, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, DOCK9, TGDS, NA NA NA NA NA NA NA NA NA LTS-026 NALCN, SLITRK5, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, GPR18, UBAC2, IPO5, MIR19B1, MIR17HG, PCCA, BIVM, ARGLU1, UGGT2, DNAJC3, RAP2A, MIR4500HG, CCDC168, SLC10A2, SLC15A1, MIR622, MIR623, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, SLITRK6, STK24, TMTC4, ZIC5, GGACT, CLDN10, TEX30, ITGBL1, TM9SF2) 0.227480776769481 90 0.0398832268662957 0.993445813026465 5244 0.245737785672269 3 3 0 -6.92711827423419 LTS-026 NA NA NA NA LTS-026 chr13 108183592 111365361 3181770 * c(COL4A2-AS1, MYO16-AS1, TNFSF13B, COL4A1, COL4A2, MYO16, ING1, LIG4, RAB20, NAXD, FAM155A, CARS2, ABHD13, IRS2) 0.181159278129271 45 0.0604999206944968 1.12129202627749 1496 0.331901883771481 4 4 0 -6.83344047396015 LTS-026 chr13 111365362 111365627 266 * c(ING1, CARS2) NA 0 NA 1.001 1 NA NA NA NA NA LTS-026 chr13 111365628 114839373 3473746 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, TUBGCP3, ADPRHL1, TEX29, SPACA7, F7, F10, RASA3, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, PROZ, ARHGEF7) 0.204337330124683 71 0.073157840439055 1.01733152500426 2627 0.322103299541319 3 3 0 -6.75900218923928 LTS-026 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.365 1 NA NA NA NA NA LTS-026 chr13 114897818 115091399 193582 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.24436247822762 17 0.0453582147693097 0.800068123467499 211 0.19130542704904 2 2 0 -6.9230722548897 LTS-026 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 0.790137528643739 29 0.0750230342296593 2 NA NA -5.76474964502111 LTS-026 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.445 1 NA 1.21187083448155 5 0.981945365078933 4 4 0 -5.76441179893318 LTS-026 chr14 20201562 22471922 2270361 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, NA NA NA NA NA NA NA NA NA LTS-026 ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.429138026753761 74 0.0731413961325033 1.02933549217801 3723 0.295857578326509 3 2 1 -6.82803316600878 LTS-026 NA NA NA NA LTS-026 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.327 1 NA NA NA NA NA LTS-026 chr14 22475772 22991095 515324 * character(0) 0.43410735611622 13 0.0634860170350477 1.25824398491907 616 0.307075552636357 4 2 2 -6.73986188496939 LTS-026 chr14 22991096 22992443 1348 * character(0) NA 0 NA 1.013 1 NA NA NA NA NA LTS-026 chr14 22992444 23744826 752383 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.438675432522881 24 0.0429681167608148 0.98402489039696 1852 0.193719014864231 2 1 1 -7.09012870848482 LTS-026 chr14 23744827 33684418 9939592 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, DHRS2, EFS, IRF9, TM9SF1, DHRS4, RIPK3, AP4S1, DTD2, DHRS1, CMTM5, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, COCH, ADCY4, FOXG1, SCFD1, KHNYN, HECTD1, HEATR5A, NGDN, TINF2, CIDEB, TSSK4, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, NA NA NA NA NA NA NA NA NA LTS-026 SLC22A17, RNF31, DHRS4-AS1, G2E3, PRKD1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, NPAS3, CBLN3, IL25, MIR624, TGM1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, JPH4, ARHGAP5-AS1, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, AKAP6, REC8) 0.429621092988446 128 0.0625624648481341 1.05657665335487 6922 0.25087967528668 3 2 1 -6.98556955911504 LTS-026 NA NA NA NA LTS-026 chr14 33684419 33684517 99 * NPAS3 NA 0 NA 1.002 1 NA NA NA NA NA LTS-026 chr14 33684518 36986357 3301840 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, KIAA0391) 0.434349881505538 29 0.04173092909761 0.979716988037527 1732 0.263951493744035 3 2 1 -7.1570061619823 LTS-026 chr14 36986358 36986433 76 * c(SFTA3, NKX2-1) NA 0 NA 1.36 1 NA NA NA NA NA LTS-026 chr14 36986434 37148216 161783 * c(SFTA3, NKX2-8, PAX9, NKX2-1, SLC25A21) 0.43099463376967 4 0.021694853460364 1.14642155016075 172 0.282903769875299 4 2 2 -6.73664003434317 LTS-026 chr14 37148217 37148962 746 * SLC25A21 0.371 1 NA 1.17687620136998 17 0.256441628491806 4 4 0 -5.76441525070824 LTS-026 chr14 37148963 38725170 1576208 * c(SLC25A21-AS1, MIR4503, MIPOL1, CLEC14A, FOXA1, SSTR1, SLC25A21) 0.242668220283832 9 0.197126862705213 1.11376781791092 666 0.383725674439503 3 3 0 -6.79155826752231 LTS-026 chr14 38725171 38725280 110 * CLEC14A NA 0 NA 0.85 1 NA NA NA NA NA LTS-026 chr14 38725281 39867378 1142098 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, FBXO33, LINC00639, MIA2, PNN, GEMIN2) 0.39454850951474 2 0.0183847763108503 0.934519939184132 647 0.268661475308104 3 2 1 -6.85662065597542 LTS-026 chr14 39867379 39867382 4 * FBXO33 NA 0 NA 1.286 1 NA NA NA NA NA LTS-026 chr14 39867383 50473309 10605927 * c(SNORD127, MIR548Y, LINC00871, LINC00648, C14orf28, LRR1, KLHDC1, RPL10L, LRFN5, MDGA2, FKBP3, FAM179B, KLHDC2, FBXO33, LINC01588, ARF6, MGAT2, POLE2, KLHL28, PRPF39, DNAAF2, MIS18BP1, FANCM, RPL36AL, RPS29, FSCB, NEMF) 0.384409556871271 20 0.162172877218304 1.05951368744224 1869 0.337735138911068 3 2 1 -6.82200126840694 LTS-026 chr14 50473310 50473664 355 * LINC01588 0.479 1 NA 0.919268162656487 2 0.0360624458405139 3 3 0 -5.76614411915715 LTS-026 chr14 50473665 56130818 5657154 * c(KTN1-AS1, MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, LINC01599, NID2, ATG14, SAMD4A, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, TBPL2, KTN1, LGALS3, ATL1, NIN, C14orf166, GNG2, FBXO34, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, CDKL1, MAPK1IP1L, DLGAP5 NA NA NA NA NA NA NA NA NA LTS-026 ) 0.449077455311753 76 0.0810776192970489 1.08290568545936 4757 0.271392388777001 3 2 1 -7.11033124347415 LTS-026 NA NA NA NA LTS-026 chr14 56130819 56133878 3060 * KTN1 NA 0 NA 1.261 1 NA NA NA NA NA LTS-026 chr14 56133879 61110230 4976352 * c(OTX2-AS1, EXOC5, L3HYPDH, NAA30, C14orf37, DAAM1, TIMM9, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, TOMM20L, KTN1, SIX6, OTX2, DACT1, JKAMP, DHRS7, TMEM260, PPM1A, C14orf105, AP5M1, ACTR10, PSMA3, PELI2, ARID4A, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, CCDC175, KIAA0586) 0.463149105084002 49 0.035156948878163 1.15515734751465 3171 0.591974728038739 4 2 2 -7.22339483562678 LTS-026 chr14 61110231 67939860 6829630 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, WDR89, GPHB5, PPP1R36, SLC38A6, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, FUT8, PLEKHG3, PLEK2, KCNH5, GPX2, HIF1A, HSPA2, RAB15, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, ATP6V1D, SIX4, PPP2R5E, PRKCH, RHOJ, TRMT5, MPP5, FUT8-AS1, LINC00643, SIX1, SNAPC1, SPTB, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5) 0.444482563005788 89 0.0815826470162481 1.06583559614566 4685 0.260395695327701 3 2 1 -7.02527281529332 LTS-026 chr14 67939861 68035879 96019 * c(TMEM229B, PLEKHH1) 0.475103021406848 2 0.0487903679018718 1.25602397336087 60 0.220065257399082 4 2 2 -7.1948060467906 LTS-026 chr14 68035880 68038779 2900 * PLEKHH1 0.359 1 NA 1.27502675848722 13 0.179642165685865 4 4 0 -5.76455964691376 LTS-026 chr14 68038780 73989983 5951204 * c(MED6, LOC100289511, SYNJ2BP-COX16, VTI1B, RDH12, ADAM21P1, LOC145474, ACTN1-AS1, ERH, PCNX1, ZFYVE26, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, ARG2, HEATR4, PLEKHD1, MAP3K9, RDH11, COX16, PIGH, ZFYVE1, EXD2, SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, PLEKHH1, RBM25, RAD51B, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, RGS6, SUSD6) 0.388100376853548 82 0.104290592588686 1.22465530651099 4744 0.305375022179607 4 2 2 -6.83728818118266 LTS-026 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.071 1 NA NA NA NA NA LTS-026 chr14 74003792 74010364 6573 * c(HEATR4, ACOT1) NA 0 NA 0.245485106024006 39 0.355232950882534 0 NA NA -5.7756456614598 LTS-026 chr14 74010365 74010368 4 * c(HEATR4, ACOT1) NA 0 NA 0.007 1 NA NA NA NA NA LTS-026 chr14 74010369 74058524 48156 * c(ACOT2, ACOT4, HEATR4, ACOT1) NA 0 NA 0.847733023160843 57 0.49331250929768 2 NA NA -5.7644726590274 LTS-026 chr14 74058525 74058553 29 * ACOT4 NA 0 NA 1.062 1 NA NA NA NA NA LTS-026 chr14 74058554 75760988 1702435 * c(MIR4505, MIR4709, NPC2, TMED10, ISCA2, ACOT4, PTGR2, FAM161B, DLST, FOS, MLH3, PROX2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, YLPM1, ZNF410, ABCD4, ACOT6, SYNDIG1L, ZC2HC1C, BBOF1, DNAL1, RPS6KL1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, ENTPD5, ACYP1, AREL1) 0.392898867875665 45 0.0938092842856282 1.18772345571114 3347 1.15491141719165 3 2 1 -6.7544244256506 LTS-026 chr14 75760989 75898839 137851 * c(JDP2, LINC01220) NA 0 NA 1.673 1 NA NA NA NA NA LTS-026 chr14 75898840 81965666 6066827 * c(MIR1260A, DIO2-AS1, BATF, AHSA1, C14orf1, IFT43, NOXRED1, JDP2, LRRC74A, ISM2, CEP128, SAMD15, DIO2, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, ZDHHC22, TMED8, C14orf178, GSTZ1, GTF2A1, POMT2, FLVCR2, GPATCH2L, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, TSHR, SLIRP, STON2, CIPC, ALKBH1, NRXN3, SPTLC2) 0.376386523420397 65 0.111600006892749 1.25606414642621 4179 0.468209947188676 4 3 1 -6.81344082922905 LTS-026 chr14 81965667 88416225 6450559 * c(LINC00911, FLRT2, GALC, LOC283585, SEL1L) 0.109077596375359 2 0.23546655813512 1.06112238082119 330 0.488510115142442 3 3 0 -6.88875054555879 LTS-026 chr14 88416226 88431898 15673 * GALC 0.473 1 NA 0.933044114788677 15 0.105233527157913 3 3 0 -5.77100522176597 LTS-026 chr14 88431899 88652483 220585 * c(GALC, LINC01146, KCNK10, GPR65) 0.48845 2 0.023334523779156 1.09492997326926 183 0.312100807543872 4 2 2 -9.14652027685521 LTS-026 chr14 88652484 88654261 1778 * KCNK10 NA 0 NA 0.893 1 NA NA NA NA NA LTS-026 chr14 88654262 90769539 2115278 * c(PTPN21, FOXN3, TTC8, EML5, FOXN3-AS2, FOXN3-AS1, KCNK10, NRDE2, TDP1, SPATA7, KCNK13, PSMC1, ZC3H14, EFCAB11) 0.448279574314616 27 0.0353736264368448 0.951344956890597 1551 0.206635000650151 2 1 1 -7.39823424572716 LTS-026 chr14 90769540 91007211 237672 * c(TTC7B, LINC00642, NRDE2, CALM1) NA 0 NA 0.894837773884615 163 0.28357276235634 2 NA NA -5.77491287426772 LTS-026 chr14 91007212 91007214 3 * TTC7B NA 0 NA 0.704 1 NA NA NA NA NA LTS-026 chr14 91007215 91084338 77124 * TTC7B 0.323 1 NA 0.734200113834806 47 0.175201488341606 2 2 0 -5.78634130391035 LTS-026 chr14 91084339 92622941 1538603 * c(SNORA11B, FBLN5, TC2N, TTC7B, ATXN3, CCDC88C, NDUFB1, CPSF2, PPP4R3A, CATSPERB, C14orf159, GPR68, RPS6KA5, TRIP11) 0.367770740522509 39 0.0857509182050516 0.729878648323692 1634 0.185236315845871 1 1 0 -7.21110596774779 LTS-026 chr14 92622942 92624008 1067 * CPSF2 NA 0 NA 0.911 1 NA NA NA NA NA LTS-026 chr14 92624009 107283157 14659149 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, NA NA NA NA NA NA NA NA NA LTS-026 DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, LINC00226, LINC00221, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2, GOLGA5) 0.341567114426452 258 0.0866471809162164 0.803142528216266 14267 0.311470666621098 2 2 0 -7.20282737517078 LTS-026 NA NA NA NA LTS-026 chr15 20169987 20446043 276057 * character(0) 0.319 1 NA 1.00651536566068 23 0.21227061555771 3 3 0 -5.76497365438868 LTS-026 chr15 20446044 22369125 1923082 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.319918442396161 27 0.122433027218337 1.14050172134175 185 0.46541977262183 4 3 1 -6.77059820599972 LTS-026 chr15 22369126 22369132 7 * c(OR4M2, LOC727924) 0.308 1 NA 2.712 1 NA NA NA NA NA LTS-026 chr15 22369133 22413880 44748 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.26706223130368 6 0.0663043487764315 1.94349684481022 40 0.958239905925282 6 5 1 -6.74015261798447 LTS-026 chr15 22413881 22440816 26936 * OR4N3P 0.257493972968258 2 0.0014142135623731 1.12351485783555 24 0.412259308347114 10 8 2 -6.83419211802697 LTS-026 chr15 22440817 22466126 25310 * character(0) 0.479 1 NA 1.09575826488851 5 0.271323976087628 3 3 0 -5.76549628516773 LTS-026 chr15 22466127 28513834 6047708 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-026 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA6L1, GOLGA8IP, SNORD109B, SNORD115-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, REREP3, GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.386036036056823 47 0.119190714642477 0.975588331596257 2541 0.290604209663531 3 2 1 -6.82186455434134 LTS-026 NA NA NA NA LTS-026 chr15 28513835 28514433 599 * HERC2 NA 0 NA 0.825 1 NA NA NA NA NA LTS-026 chr15 28514434 35081168 6566735 * c(WHAMMP1, LOC100288637, LOC100289656, MIR1233-2, TMCO5B, LOC100996255, CHRM5, CHRNA7, OTUD7A, PGBD4, FAN1, GOLGA8A, FAM189A1, LPCAT4, NUTM1, DKFZP434L187, GREM1, LOC283710, APBA2, FMN1, HERC2P10, MIR211, TRPM1, HERC2P9, WHAMMP2, GOLGA8B, EMC4, KLF13, MTMR10, NOP10, NSMCE3, EMC7, AVEN, GJD2, RYR3, SCG5, PDCD6IPP2, GOLGA8T, ACTC1, TJP1, GOLGA8O, GOLGA6L7P, KATNBL1, HERC2, CHRFAM7A, ARHGAP11B, ARHGAP11A, SLC12A6 NA NA NA NA NA NA NA NA NA LTS-026 ) 0.410959621799815 98 0.0859511069358921 0.906872069576467 3771 0.276778951134971 2 1 1 -7.15769835580081 LTS-026 NA NA NA NA LTS-026 chr15 35081169 35148102 66934 * ACTC1 0.452 1 NA 0.910373504311066 71 0.20741827121884 2 2 0 -5.77268854244413 LTS-026 chr15 35148103 38236461 3088359 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, TMCO5A, CSNK1A1P1, MEIS2, ZNF770, ANP32AP1, C15orf41, DPH6, AQR) 0.43219492279353 14 0.0465708133850018 0.93557257947172 780 0.254701411507145 2 1 1 -7.12845695363626 LTS-026 chr15 38236462 38236529 68 * TMCO5A NA 0 NA 0.802 1 NA NA NA NA NA LTS-026 chr15 38236530 40898714 2662185 * c(SRP14-AS1, ANKRD63, RASGRP1, GPR176, CHST14, TMCO5A, SPRED1, FSIP1, BAHD1, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, EIF2AK4, PLCB2, PAK6, KNL1, C15orf56, PHGR1, SRP14, BUB1B, THBS1, DISP2, C15orf57, KNSTRN, BMF) 0.461929876381903 43 0.0413326456556948 0.762783003078333 2762 0.173648718279993 2 1 1 -7.39923733345087 LTS-026 chr15 40898715 40900971 2257 * KNL1 NA 0 NA 0.453 1 NA NA NA NA NA LTS-026 chr15 40900972 42104009 1203038 * c(RAD51-AS1, CHP1, OIP5, EXD1, RHOV, MAPKBP1, RTF1, MGA, RPAP1, GCHFR, ITPKA, LTK, NDUFAF1, NUSAP1, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, MIR626, OIP5-AS1, TYRO3, CHAC1, ZFYVE19) 0.356496570243263 18 0.13630847369111 0.66595556853187 2415 0.156510084134816 1 1 0 -6.78840334677798 LTS-026 chr15 42104010 42104178 169 * MAPKBP1 NA 0 NA 0.81 1 NA NA NA NA NA LTS-026 chr15 42104179 42483400 379222 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, VPS39, PLA2G4F, PLA2G4D, EHD4, SPTBN5, JMJD7-PLA2G4B) 0.389822904710544 40 0.0597204545554343 0.732403728525501 1348 0.180885656302758 2 1 1 -7.10543929814911 LTS-026 chr15 42483401 43852785 1369385 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, VPS39, CCNDBP1, LRRC57, GANC, TMEM87A, TUBGCP4, MAP1A, HAUS2, STARD9, ZNF106, MIR627, TP53BP1, TMEM62, CAPN3, SNAP23, TGM5, PPIP5K1, LCMT2) 0.384513646683634 35 0.104283082734151 0.675766799481501 3024 0.15433065420266 1 1 0 -6.91111605594081 LTS-026 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.398 1 NA NA NA NA NA LTS-026 chr15 43873177 43952305 79129 * c(CKMT1B, CATSPER2, STRC, PPIP5K1) 0.182983137351563 2 0.174655374953077 0.409055904119083 239 0.2144439005692 2 2 0 -7.35311135559583 LTS-026 chr15 43952306 43973033 20728 * CATSPER2 NA 0 NA 1.508 1 NA NA NA NA NA LTS-026 chr15 43973034 45060093 1087060 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.417886532471292 34 0.0543044497443081 0.657051301396888 1636 0.163037015575281 1 1 0 -7.57459277625473 LTS-026 chr15 45060094 45117968 57875 * character(0) NA 0 NA 1.284 1 NA NA NA NA NA LTS-026 chr15 45117969 45139695 21727 * character(0) NA 0 NA 1.49388964531746 39 1.78574896378898 6 NA NA -5.76442625832526 LTS-026 chr15 45139696 45142487 2792 * character(0) NA 0 NA 0.647 1 NA NA NA NA NA LTS-026 chr15 45142488 48789565 3647078 * c(MIR147B, TERB2, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, DUOXA2, DUOX2, MYEF2, DUOX1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, DUOXA1, SLC28A2) 0.391803849392677 33 0.0873004976729193 0.700044944878439 2506 0.182550963345306 1 1 0 -7.38785758729707 LTS-026 chr15 48789566 51223170 2433605 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.407227064305609 35 0.0510328284522025 0.649474385983677 2222 0.144327796241138 1 1 0 -7.43280574343567 LTS-026 chr15 51223171 51226658 3488 * AP4E1 NA 0 NA 0.953 1 NA NA NA NA NA LTS-026 chr15 51226659 56922578 5695920 * c(LOC100129973, DCAF13P3, BCL2L10, MIR1266, DYX1C1-CCPG1, MIR4713, GNB5, ARPP19, LEO1, C15orf65, CYP19A1, DYX1C1, DMXL2, AP4E1, LYSMD2, WDR72, PYGO1, PRTG, SCG3, TMOD3, TMOD2, ONECUT1, GLDN, TEX9, TNFAIP8L3, UNC13C, MYO5A, NEDD4, RSL24D1, ZNF280D, MNS1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.408770967905099 57 0.0765782602954304 0.693499471783333 4140 0.233915767690322 1 1 0 -7.47595355835129 LTS-026 chr15 56922579 67664599 10742021 * c(USP3-AS1, MIR1272, MIR2116, MIR4311, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, MGC15885, LCTL, ZNF609, DAPK2, FOXB1, LINC00926, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, LIPC, MIR190A, SMAD3, SMAD6, MYO1E, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, NA NA NA NA NA NA NA NA NA LTS-026 DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, BNIP2, SNX1, HSP90AB4P, SCARNA14, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.442460529912075 132 0.0754488500438241 0.767676456641475 9539 0.194618837225782 2 1 1 -7.60262888528386 LTS-026 NA NA NA NA LTS-026 chr15 67664600 72226121 4561522 * c(NR2E3, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, DRAIC, C15orf61, CT62, ITGA11, SPESP1, GLCE, EWSAT1, SKOR1, LINC00593, MYO9A, LRRC49, PAQR5, CLN6, UACA, LARP6, MAP2K5, THAP10, RPLP1, IQCH, MIR629, TLE3, NOX5, THSD4, ANP32A-IT1, ANP32A, PIAS1, CALML4, KIF23) 0.451139353954927 51 0.0340304822988184 0.808767231323371 3146 0.191776460204365 2 1 1 -6.98522489228743 LTS-026 chr15 72226122 72227669 1548 * MYO9A NA 0 NA 1.084 1 NA NA NA NA NA LTS-026 chr15 72227670 83925096 11697427 * c(DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR4313, NA, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, SENP8, HIGD2B, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, GRAMD2, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, NA NA NA NA NA NA NA NA NA LTS-026 TMED3, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, FBXO22, NPTN, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, HEXA, TMEM202, LOC338963, IDH3A, GOLGA6A, TMC3, IL16, IREB2, ISLR, C15orf59, ANKRD34C, ADAMTS7P1, ST20, LOXL1, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, MYO9A, NEO1, SCAPER, HDGFRP3, PKM, BTBD1, TM6SF1, PML, ZFAND6, RPP25, COMMD4, IMP3, DNAJA4, GOLGA6B, PSMA4, C15orf39, PARP6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 FAM219B, CEMIP, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, CELF6, STRA6, CPEB1, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR630, MIR631, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, UBL7, PSTPIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 LOC91450, UBE2Q2, COX5A, STOML1, HOMER2, ARNT2) 0.414997042176396 130 0.0996561293971235 0.912309543583125 10670 0.482888426527446 2 1 1 -7.01508773690284 LTS-026 NA NA NA NA LTS-026 chr15 83925097 86311772 2386676 * c(UBE2Q2L, LINC00933, AKAP13, SEC11A, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, PDE8A, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, KLHL25, SH3GL3, BNC1, EFTUD1P1, WDR73, SLC28A1, ZNF592) 0.420429390206203 47 0.043239111017158 1.14684467748061 1824 0.221781080716212 4 2 2 -6.84814584552342 LTS-026 chr15 86311773 89420684 3108912 * c(MIR1276, MIR1179, MIR3529, AGBL1, HAPLN3, LINC00052, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, KLHL25, AEN, MRPS11, AGBL1-AS1) 0.42303509632413 36 0.0333067989627172 1.34846634282235 1142 0.300802568529621 5 3 2 -6.77899700513537 LTS-026 chr15 89420685 89420709 25 * HAPLN3 NA 0 NA 1.257 1 NA NA NA NA NA LTS-026 chr15 89420710 98419361 8998652 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, FES, GABARAPL3, MIR9-3HG, VPS33B, SLCO3A1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, LINC01197, MIR9-3, MAN2A2, MFGE8, TTLL13P, LOC440311, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MCTP2, MESP1, UNC45A, RGMA, NA NA NA NA NA NA NA NA NA LTS-026 WDR93, RLBP1, BLM, NR2F2-AS1, CRTC3, NR2F2, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, LINC00923, SV2B) 0.403394383037493 139 0.0837289842321175 1.24291413874468 5291 0.285850859989411 4 2 2 -6.8444629741664 LTS-026 NA NA NA NA LTS-026 chr15 98419362 98419490 129 * character(0) NA 0 NA 1.096 1 NA NA NA NA NA LTS-026 chr15 98419491 101464915 3045425 * c(MIR4714, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, PRKXP1, LINS1, TTC23, HSP90B2P, LRRK1, ARRDC4) 0.415644776426793 85 0.0758538381488027 1.16380785643581 1983 0.28840143227431 4 2 2 -6.78908830834556 LTS-026 chr15 101464916 101527411 62496 * LRRK1 0.11 1 NA 1.15977322692152 23 0.4260454985074 4 4 0 -5.76477580162012 LTS-026 chr15 101527412 102312095 784684 * c(LOC100507472, TARSL2, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1, TM2D3) 0.326449746180415 13 0.176749823196517 1.12828431234996 821 0.272504221657987 4 3 1 -6.76813737519028 LTS-026 chr15 102312096 102516544 204449 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) NA 0 NA 1.19641546952522 93 0.194789934922413 4 NA NA -5.76479906217172 LTS-026 chr16 81704 96405 14702 * character(0) 0.442 1 NA 0.937760875154777 3 0.598503411296321 3 3 0 -5.76458032551223 LTS-026 chr16 96406 2672816 2576411 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-026 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 UBE2I, SNHG9, CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.447800005315773 240 0.0791340683086942 0.806955793333937 8244 0.287779456169134 2 1 1 -6.77389070736778 LTS-026 NA NA NA NA LTS-026 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.002 1 NA NA NA NA NA LTS-026 chr16 2692191 2747930 55740 * c(ERVK13-1, KCTD5, FLJ42627) NA 0 NA 0.526753278685084 74 0.311884424584505 0 NA NA -5.77356471334987 LTS-026 chr16 2747931 11770046 9022116 * c(LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, CLEC16A, MGRN1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, UBN1, CDIP1, NA NA NA NA NA NA NA NA NA LTS-026 HMOX2, C16orf96, PRSS41, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, PRM1, PRM2, NMRAL1, PRM3, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, TNP2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, LITAF, SEC14L5) 0.449016817528643 167 0.0623057691856752 0.805425850560148 7136 0.360061907578916 2 1 1 -6.81764725426087 LTS-026 NA NA NA NA LTS-026 chr16 11770047 12183686 413640 * c(RSL1D1, ZC3H7A, GSPT1, BCAR4, TXNDC11, TNFRSF17, SNN, SNX29) 0.473644500392938 7 0.0288716370954511 0.724502786608182 585 0.163276214502365 2 1 1 -7.99569769983023 LTS-026 chr16 12183687 12183751 65 * SNX29 NA 0 NA 0.842 1 NA NA NA NA NA LTS-026 chr16 12183752 14041958 1858207 * c(MIR4718, ERCC4, CPPED1, SHISA9, SNX29) 0.419660438803904 17 0.0621680005639368 0.882286455470521 351 0.196443779204836 2 1 1 -6.86402495193504 LTS-026 chr16 14041959 14762611 720653 * c(MIR365A, ERCC4, PARN, BFAR, MIR193B, MKL2) 0 1 NA 0.920839559369008 297 0.198406482139274 3 3 0 -5.87515786476956 LTS-026 chr16 14762612 14968958 206347 * c(NOMO1, BFAR, NPIPA3, ABCC6P2, PLA2G10) 0.468 1 NA 1.01196579961956 54 0.295516776628743 3 3 0 -5.76447923329334 LTS-026 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 0.661 1 NA NA NA NA NA LTS-026 chr16 15068593 15123936 55344 * PDXDC1 0.445204562440972 7 0.0277179673548714 0.654607215320545 114 0.148289000857077 2 1 1 -6.97593507901366 LTS-026 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 1.014 1 NA NA NA NA NA LTS-026 chr16 15125636 17432399 2306764 * c(NPIPA5, MIR3179-2, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, RRN3, NDE1, MIR484, XYLT1, C16orf45, KIAA0430) 0.406587110004207 39 0.0850083110964192 0.976311680735212 1450 0.25052876914792 3 2 1 -6.776795114762 LTS-026 chr16 17432400 18810221 1377822 * c(ARL6IP1, NOMO2, RPS15A, XYLT1, ABCC6P1) 0.414926906337826 3 0.0195533458347499 0.803236280587354 170 0.208417553924447 2 1 1 -7.11767103607663 LTS-026 chr16 18810222 18812632 2411 * ARL6IP1 NA 0 NA 1.022 1 NA NA NA NA NA LTS-026 chr16 18812633 28608392 9795760 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, SBK1, KNOP1, NA NA NA NA NA NA NA NA NA LTS-026 CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, COG7, CCP110, HS3ST4, HS3ST2) 0.39909170634864 146 0.0919671166407947 0.982697041964555 8091 0.265565035268685 3 2 1 -6.84112617479387 LTS-026 NA NA NA NA LTS-026 chr16 28608393 28734795 126403 * SULT1A1 0.362376571213726 2 0.0190918830920368 0.562994312864862 86 0.267060212140155 1 1 0 -6.99951117628804 LTS-026 chr16 28734796 29367277 632482 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.411705685013444 23 0.0581545575958579 0.978173776462506 860 0.195355906765992 3 2 1 -6.77366511367557 LTS-026 chr16 29367278 29681462 314185 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN, SULT1A3, SLC7A5P1) NA 0 NA 0.739562397018734 169 0.340700154443897 2 NA NA -5.78528000952186 LTS-026 chr16 29681463 29681971 509 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN) NA 0 NA 1.321 1 NA NA NA NA NA LTS-026 chr16 29681972 32859525 3177554 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, LOC390705, MAZ, NA NA NA NA NA NA NA NA NA LTS-026 SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SNORA30, STX4, TBX6, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MVP) 0.398895535339714 58 0.111171837962493 0.950412219110537 5651 0.21096649872644 3 2 1 -6.93449811252101 LTS-026 NA NA NA NA LTS-026 chr16 32859526 32888846 29321 * c(SLC6A10P, LOC390705) NA 0 NA 2.041 1 NA NA NA NA NA LTS-026 chr16 32888847 33534254 645408 * c(SLC6A10P, LOC390705) 0.443488290351632 2 0.0268700576850888 1.27774547358629 92 0.410733842115265 4 2 2 -6.87310585700243 LTS-026 chr16 33534255 33534278 24 * character(0) 0.322 1 NA 0.972 1 NA NA NA NA NA LTS-026 chr16 33534279 33730767 196489 * character(0) 0.302146870158911 4 0.0896823096639837 1.09200267905683 29 0.443427439485504 5 4 1 -6.77284696263564 LTS-026 chr16 33730768 33738555 7788 * character(0) NA 0 NA 0.528 1 NA NA NA NA NA LTS-026 chr16 33738556 33815896 77341 * character(0) NA 0 NA 0.582940662205218 49 0.12009276459822 1 NA NA -5.79045559451073 LTS-026 chr16 33815897 33815945 49 * character(0) NA 0 NA 1.096 1 NA NA NA NA NA LTS-026 chr16 33815946 33962387 146442 * LINC00273 0.31985589181949 55 0.101660102454092 1.29950374084912 87 0.575720083496803 4 3 1 -6.76234220734581 LTS-026 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.514 1 NA NA NA NA NA LTS-026 chr16 33965501 34490107 524607 * UBE2MP1 0.367299566988954 8 0.146080946249478 0.804643044809502 106 0.349842087338952 2 1 1 -6.84611975557667 LTS-026 chr16 34490108 34682380 192273 * LINC01566 NA 0 NA 1.02762108654013 33 0.193991804145839 3 NA NA -5.76462490031533 LTS-026 chr16 46508169 46602819 94651 * ANKRD26P1 0.474 1 NA 1.03871789450364 97 0.276997161367221 3 3 0 -5.76468044668703 LTS-026 chr16 46602820 56553752 9950933 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, NUDT21, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, CES5A, ZNF423, RPGRIP1L, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, BRD7, C16orf87, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, OGFOD1, VPS35, BBS2, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NA NA NA NA NA NA NA NA NA LTS-026 NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.437506154474639 87 0.0800075043259254 0.980790772583195 5231 0.248059299600626 3 2 1 -7.00060389499243 LTS-026 NA NA NA NA LTS-026 chr16 56553753 64979561 8425809 * c(CDH8, KATNB1, CETP, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, GOT2, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, POLR2C, SLC38A7, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, MT1IP, APOOP5, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, USB1, SETD6, FAM192A, NLRC5, NA NA NA NA NA NA NA NA NA LTS-026 DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.422776653062517 103 0.0497446477811124 0.790422079143926 3947 0.183469257439152 2 1 1 -7.06347180898779 LTS-026 NA NA NA NA LTS-026 chr16 64979562 70154614 5175053 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH11, CDH16, NUTF2, CTCF, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, NA NA NA NA NA NA NA NA NA LTS-026 PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.434937516276157 84 0.0795011871296277 0.722395809052721 7158 0.708241130093938 2 1 1 -6.84880703620022 LTS-026 NA NA NA NA LTS-026 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.457 1 NA NA NA NA NA LTS-026 chr16 70161183 70219827 58645 * c(CLEC18C, PDPR) 0.398 1 NA 0.462355942092972 111 0.146915002141435 0 0 0 -5.76617457851382 LTS-026 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 0.754 1 NA NA NA NA NA LTS-026 chr16 70237374 70868083 630710 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.411809272750313 17 0.112654273306065 0.721814430835022 1241 0.173245568874719 2 1 1 -6.98033157600542 LTS-026 chr16 70868084 70869685 1602 * HYDIN NA 0 NA 1.058 1 NA NA NA NA NA LTS-026 chr16 70869686 71212952 343267 * HYDIN 0.380157336325154 91 0.0561917874063192 0.867465135455118 588 0.337051146975744 3 2 1 -6.85394994206569 LTS-026 chr16 71212953 71218699 5747 * HYDIN NA 0 NA 0.703 1 NA NA NA NA NA LTS-026 chr16 71218700 75794782 4576083 * c(SNORA70D, LINC01568, CHST4, CFDP1, GABARAPL2, TMEM170A, CTRB1, ZFP1, AP1G1, DHODH, LDHD, MLKL, PHLPP2, ADAT1, CHST5, GLG1, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, KARS, CHST6, CTRB2, ZFHX3, CLEC18B, TERF2IP, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, PMFBP1, ZNRF1, MARVELD3, BCAR1, DHX38, IST1) 0.413309547588341 62 0.112873787051196 0.62077038340775 3699 0.144679714824953 1 1 0 -7.0133846942503 LTS-026 chr16 76311544 79246020 2934477 * c(SYCE1L, MIR4719, CLEC3A, ADAMTS18, MON1B, NUDT7, WWOX, VAT1L, CNTNAP4) 0.390756490440474 33 0.0441777787622198 0.934601703086877 693 0.252600459539198 3 2 1 -6.95917682360041 LTS-026 chr16 79246021 79619738 373718 * WWOX NA 0 NA 0.706 1 NA NA NA NA NA LTS-026 chr16 79619739 83065664 3445926 * c(LOC100129617, MIR4720, CDH13, MPHOSPH6, PKD1L2, C16orf46, CDYL2, ATMIN, GCSH, HSD17B2, MAF, PLCG2, BCO1, CENPN, CMC2, CMIP, GAN, DYNLRB2, SDR42E1) 0.418765099297473 37 0.0496890329952194 0.785224615841099 1449 0.187143715443996 2 1 1 -6.9326376911545 LTS-026 chr16 83065665 83159619 93955 * CDH13 NA 0 NA 0.751193353545394 15 0.0900244940214024 2 NA NA -5.83041943073263 LTS-026 chr16 83159620 83205096 45477 * CDH13 NA 0 NA 1.072 1 NA NA NA NA NA LTS-026 chr16 83205097 83658649 453553 * c(MIR3182, CDH13) 0.355 1 NA 1.02765362081142 35 0.239473803412833 3 3 0 -5.76474509780608 LTS-026 chr16 83658650 84256415 597766 * c(CDH13, DNAAF1, SLC38A8, ADAD2, MLYCD, OSGIN1, HSBP1, NECAB2, HSDL1, MBTPS1, TAF1C, KCNG4) 0.321341538684137 25 0.0833538241474259 0.999689214300217 803 0.324555316489043 4 3 1 -6.89035314823773 LTS-026 chr16 84256416 90124695 5868280 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, NA NA NA NA NA NA NA NA NA LTS-026 FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.341490583337271 173 0.0741091139759316 0.894503296676008 6185 0.305176643825402 2 2 0 -7.45902905777886 LTS-026 NA NA NA NA LTS-026 chr16 90124696 90161242 36547 * PRDM7 NA 0 NA 0.845435890111279 61 0.163040822606075 2 NA NA -5.7647478731104 LTS-026 chr17 6004 62484 56481 * c(DOC2B, RPH3AL) 0.243 1 NA 0.869912423396101 37 0.173573049761775 2 2 0 -5.76708490174049 LTS-026 chr17 62485 904337 841853 * c(DBIL5P, LOC100506388, TIMM22, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, RPH3AL) 0.219179428965445 18 0.0341505700963907 0.906630244104286 615 0.240709087483237 3 3 0 -6.84993177730923 LTS-026 chr17 904338 906799 2462 * c(ABR, TIMM22) NA 0 NA 0.66 1 NA NA NA NA NA LTS-026 chr17 906800 2221308 1314509 * c(PITPNA-AS1, MIR3183, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, SMG6, TUSC5, ABR, HIC1, MIR132, MIR212, MIR22, MYO1C, SERPINF1, INPP5K, PITPNA, SERPINF2, RPA1, SRR, BHLHA9, TLCD2, YWHAE, RILP, MIR22HG, SCARF1) 0.236341647468798 58 0.0400079695630026 0.821636496224986 2106 0.390270860118545 3 3 0 -7.06759033615141 LTS-026 chr17 2221309 3962627 1741319 * c(MIR1253, P2RX5-TAX1BP3, CTNS, TRPV3, RAP1GAP2, ZZEF1, CLUH, SHPK, OR1A2, LOC284009, TAX1BP3, ITGAE, OR3A4P, MNT, ASPA, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, NCBP3, TSR1, SRR, OR1D4, SNORD91A, SNORD91B, TRPV1, METTL16, EMC6, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, CAMKK1, SPATA22, SGSM2) 0.224543637275491 53 0.0314132528215431 0.956381311825298 2470 0.33955018606282 3 3 0 -6.78429787537599 LTS-026 chr17 3962628 3966002 3375 * ZZEF1 NA 0 NA 0.615 1 NA NA NA NA NA LTS-026 chr17 3966003 8141610 4175608 * c(C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, CAMTA2, KDM6B, ZZEF1, NA NA NA NA NA NA NA NA NA LTS-026 WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, GUCY2D, LOC339166, TMEM95, SMTNL2, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ATP1B2, NUP88, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SLC52A1, WRAP53, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, UBE2G1, ZNF232, MIS12, PHF23, CTC1, PITPNM3, TEKT1, SLC25A11, ZMYND15, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, SPAG7, CD68, ACAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 KIAA0753) 0.240338503955047 184 0.0489348043909372 0.867784712949192 9382 0.20767628463315 2 2 0 -7.06825681810316 LTS-026 NA NA NA NA LTS-026 chr17 8141611 8141626 16 * CTC1 NA 0 NA 1.115 1 NA NA NA NA NA LTS-026 chr17 8141627 15466891 7325265 * c(MIR744, LOC100128288, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, USP43, KRBA2, COX10, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, TVP23C, ARHGEF15, PIK3R5, LINC00670, CDRT4, RANGRF, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PFAS, PMP22, ADPRM, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, RNF222, PIRT, TEKT3, ZNF18, CTC1, NDEL1, MGC12916, NA NA NA NA NA NA NA NA NA LTS-026 GAS7, MYH13, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.237204621163046 126 0.0582180820653264 0.926795959923219 4915 0.243489615989551 3 3 0 -7.39034656301149 LTS-026 NA NA NA NA LTS-026 chr17 15466892 15474915 8024 * c(TVP23C-CDRT4, TRIM16, TVP23C) NA 0 NA 0.414137736432514 40 0.276191771911827 0 NA NA -5.76478652669708 LTS-026 chr17 15474916 20924620 5449705 * c(FAM106CP, LOC100287072, MIR1288, MIR1180, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, TRIM16, RAI1, GRAP, AKAP10, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, SLC47A2, TRIM16L, USP32P1, DRG2, CENPV, FLCN, PLD6, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, MPRIP, USP22, TNFRSF13B, TBC1D28, CDRT15L2, SNORD49A, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, TBC1D26, CDRT1, LRRC75A, NA NA NA NA NA NA NA NA NA LTS-026 LLGL1, KRT16P2, GRAPL, MEIS3P1, MFAP4, TVP23B, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, SLC47A1, MAPK7, PRPSAP2, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, FAM83G, KRT16P3, EVPLL, SHMT1, LGALS9C, SREBF1, SNORA59A, SNORD49B, SNORD65, MIR33B, TOP3A, KRT16P1, ZNF286B, UBB, RNF112, GID4, FAM106A, DRC3, COPS3, ATPAF2, SPECC1, PIGL, NCOR1, ULK2, CCDC144A) 0.270549097697175 127 0.0740640816386484 0.832636081639836 6696 0.228701737407215 2 2 0 -6.7346092555909 LTS-026 NA NA NA NA LTS-026 chr17 20924621 21194785 270165 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.425 1 NA 0.788164496918072 115 0.21012444934021 2 2 0 -5.77354176956782 LTS-026 chr17 21194786 21217974 23189 * MAP2K3 0.403303802148381 61 0.0834578817894804 0.957013743301999 135 0.22775600640199 3 2 1 -6.73500042827346 LTS-026 chr17 21217975 21218040 66 * MAP2K3 NA 0 NA 1.517 1 NA NA NA NA NA LTS-026 chr17 21218041 21218560 520 * MAP2K3 0.425919448531908 9 0.0376035607061057 1.1334514657579 20 0.328867850599439 7 4 3 -6.73457547860916 LTS-026 chr17 21218561 21318546 99986 * KCNJ12 0.361 1 NA 1.56721137273132 2 1.41845620306021 6 6 0 -5.76441674475301 LTS-026 chr17 21318547 21320350 1804 * KCNJ12 0.306253281769964 44 0.067669792711859 1.40649002114396 87 0.584616009795646 8 6 2 -6.7334077904016 LTS-026 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 0.859 1 NA NA NA NA NA LTS-026 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.351082957141448 10 0.071396856451185 0.837688872429872 208 0.304581864838531 1 1 0 -7.07162613127338 LTS-026 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.71 1 NA NA NA NA NA LTS-026 chr17 25620838 25887530 266693 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.246 1 NA 0.839146510806997 81 0.124720162071577 2 2 0 -5.76608666310048 LTS-026 chr17 25887531 26116807 229277 * c(LGALS9, NOS2, KSR1) 0.236881575109099 8 0.0464880937137979 0.886583977625289 405 0.21635680511353 3 3 0 -6.87151496672287 LTS-026 chr17 26116808 26125737 8930 * NOS2 NA 0 NA 0.788 1 NA NA NA NA NA LTS-026 chr17 26125738 27384233 1258496 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, IFT20, SLC13A2, UNC119, PIGS, TRAF4, KIAA0100) 0.273726179295117 15 0.122919175922733 0.75526271055899 2644 0.165684375633403 2 2 0 -6.96039631018408 LTS-026 chr17 27384234 27400507 16274 * PIPOX NA 0 NA 1.42 1 NA NA NA NA NA LTS-026 chr17 27400508 27430802 30295 * c(MYO18A, TIAF1) 0 1 NA 1.18413960958535 134 0.445572917024353 4 4 0 -5.7644516008518 LTS-026 chr17 27430803 27434026 3224 * MYO18A NA 0 NA 0.78 1 NA NA NA NA NA LTS-026 chr17 27434027 32906432 5472406 * c(MIR365B, MIR3184, AA06, MIR4523, MIR4724, MIR4733, MIR4725, LRRC37B, ABHD15, SPACA3, ANKRD13B, CPD, CRYBA1, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, TBC1D29, GIT1, EFCAB5, TMIGD1, MYO18A, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, PSMD11, NUFIP2, TAOK1, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, NA NA NA NA NA NA NA NA NA LTS-026 SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, GOSR1) 0.250055397353286 52 0.090320017190427 0.767617831753228 4657 0.206835460548959 2 2 0 -7.17899449836634 LTS-026 NA NA NA NA LTS-026 chr17 32906433 32907940 1508 * TMEM132E NA 0 NA 1.163 1 NA NA NA NA NA LTS-026 chr17 32907941 32964602 56662 * TMEM132E 0.210995090935384 3 0.0245560583156173 1.06879987104466 69 0.283267584267376 3 3 0 -6.80634881932223 LTS-026 chr17 32964603 34433730 1469128 * c(SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.273487703846872 37 0.0651867379979303 0.762984634294434 2188 0.294100688995696 2 2 0 -6.80309649455769 LTS-026 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.07 1 NA NA NA NA NA LTS-026 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.142606771797009 39 0.115720170647717 0 NA NA -9.06101932449062 LTS-026 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.787 1 NA NA NA NA NA LTS-026 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.252204497317891 20 0.0925318721761375 0.765463486716391 1545 0.19629161933567 2 2 0 -6.88793240160146 LTS-026 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.32 1 NA NA NA NA NA LTS-026 chr17 36351756 36398345 46590 * LOC440434 0.066 1 NA 0.340303462117934 58 0.0738578632817254 0 0 0 -6.12537354660985 LTS-026 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.668 1 NA NA NA NA NA LTS-026 chr17 36421727 39240522 2818796 * c(LOC100131347, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, NA NA NA NA NA NA NA NA NA LTS-026 MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, KRTAP1-4, KRTAP2-2, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, TNS4, FBXL20, KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.255321918946999 95 0.0803680712453639 0.769644814734312 5923 0.187509254982115 2 2 0 -7.00349129540297 LTS-026 NA NA NA NA LTS-026 chr17 39240523 39240601 79 * KRTAP4-7 NA 0 NA 1.073 1 NA NA NA NA NA LTS-026 chr17 39240602 39988734 748133 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, EIF1, P3H4, NT5C3B, LINC00974, GAST, KRT42P, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, FKBP10, KRTAP4-11, KRTAP4-8, KRTAP9-1, KRTAP9-9, KRTAP4-6, KRTAP4-12, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRT38, KRT37, KRT36, NA NA NA NA NA NA NA NA NA LTS-026 HAP1) 0.222573146492052 22 0.0731721713950506 0.840669467826457 1562 0.230113355033521 2 2 0 -6.97711626287106 LTS-026 NA NA NA NA LTS-026 chr17 39988735 44067382 4078648 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, GJC1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, FZD2, G6PC, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, PTRF, NKIRAS2, NA NA NA NA NA NA NA NA NA LTS-026 COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, ARL4D, LINC00671, CCDC103, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, VPS25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 TMEM101, GHDC, CNTNAP1, AOC3, BECN1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.262430873946389 127 0.0676326149403861 0.788182869783676 7379 0.18719776408373 2 2 0 -6.9095365683552 LTS-026 NA NA NA NA LTS-026 chr17 44067383 44159945 92563 * character(0) NA 0 NA 0.807803777318374 217 0.173930742980689 2 NA NA -5.76558482672126 LTS-026 chr17 44159946 44172017 12072 * character(0) NA 0 NA 0.576 1 NA NA NA NA NA LTS-026 chr17 44172018 44364336 192319 * character(0) NA 0 NA 0.436668344487303 71 0.127109949395838 0 NA NA -5.76860956534338 LTS-026 chr17 44364337 44408491 44155 * character(0) NA 0 NA 1.1 1 NA NA NA NA NA LTS-026 chr17 44408492 45214473 805982 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.458 1 NA 0.816170738959422 323 0.510435066580243 2 2 0 -5.76482737494295 LTS-026 chr17 45214474 46048592 834119 * c(OSBPL7, EFCAB13, MRPL10, TBX21, ITGB3, KPNB1, MYL4, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.319881066862403 42 0.0780570423363856 0.743560438814108 1228 0.175893913017084 2 2 0 -7.15185515547946 LTS-026 chr17 46048593 46055106 6514 * CDK5RAP3 0.218 1 NA 0.784734861187175 50 0.167956079049839 2 2 0 -5.76481812877991 LTS-026 chr17 46055107 46690674 635568 * c(MIR1203, HOXB-AS1, CBX1, SNX11, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB-AS3, MIR10A, MIR152, NFE2L1, COPZ2, CDK5RAP3, SKAP1) 0.227949129391477 17 0.0678806261886608 0.77207929297667 764 0.241841323376441 2 2 0 -6.98739922051068 LTS-026 chr17 46690675 46690708 34 * HOXB8 NA 0 NA 0.926 1 NA NA NA NA NA LTS-026 chr17 46690709 49567835 2877127 * c(MIR3185, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, HOXB8, HOXB9, PRAC2, ITGA3, HILS1, TOB1-AS1, MIR196A1, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, NA NA NA NA NA NA NA NA NA LTS-026 UBE2Z, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PRAC1, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.230876980172095 98 0.0578479701450736 0.849869997456367 4972 0.220824928149279 2 2 0 -7.0188321144892 LTS-026 NA NA NA NA LTS-026 chr17 49567836 49708800 140965 * CA10 NA 0 NA 1.007 1 NA NA NA NA NA LTS-026 chr17 49708801 53241606 3532806 * c(TOM1L1, C17orf112, COX11, STXBP4, CA10, KIF2B) 0.224195733893129 6 0.025335087658555 1.14289539591758 400 0.556899040398475 3 3 0 -6.84150735702363 LTS-026 chr17 53241607 56676885 3435279 * c(MIR3614, TSPOAP1-AS1, MIR4736, HSF5, OR4D2, MSI2, DYNLL2, ANKFN1, MMD, MTVR2, OR4D1, C17orf47, HLF, C17orf67, RNF126P1, LPO, CUEDC1, MIR142, MPO, MRPS23, SEPT4, RNF43, MKS1, TMEM100, MSX2P1, TEX14, PCTP, SCPEP1, SRSF1, SUPT4H1, TRIM25, VEZF1, COIL, AKAP1, EPX, DGKE, MTMR4, NOG, TSPOAP1) 0.221105934909958 12 0.0279083999519641 0.991786252578848 1968 0.212500208020959 3 3 0 -6.76823115472995 LTS-026 chr17 56676886 65104894 8428009 * c(MIR4729, MIR4737, MIR3064, MIR5047, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, PPM1E, TANC2, GH1, GH2, CACNG5, CACNG4, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, TRIM37, RNFT1, TUBD1, TACO1, PTRH2, PECAM1, NA NA NA NA NA NA NA NA NA LTS-026 BCAS3, SMG8, PRR11, PRKCA, TEX2, TEX14, CCDC47, PSMC5, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, LOC729683, CA4, MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.232814819252597 50 0.0778187874068299 0.942306426086303 5861 0.222462932891135 3 3 0 -7.31928583333793 LTS-026 NA NA NA NA LTS-026 chr17 65104895 65105202 308 * HELZ NA 0 NA 0.572 1 NA NA NA NA NA LTS-026 chr17 65105203 66596822 1491620 * c(SNORA38B, LINC00674, BPTF, ARSG, NOL11, PITPNC1, C17orf58, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PSMD12, MIR635, SLC16A6, HELZ) 0.214107048925572 9 0.0247980734018682 0.880905865500202 1104 0.208347315328305 3 3 0 -7.17050207562968 LTS-026 chr17 66596823 66864277 267455 * c(ABCA8, FAM20A) NA 0 NA 0.926 1 NA NA NA NA NA LTS-026 chr17 66864278 73637544 6773267 * c(CD300LD, LOC100287042, LINC00673, MIR3678, MIR3615, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, ATP5H, CD300C, CD300A, USH1G, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, FDXR, GGA3, ABCA6, ABCA5, KCTD2, CDC42EP4, NAT9, LINC00469, FADS6, HID1, TSEN54, GRB2, GRIN2C, NT5C, CDR2L, RAB37, MRPL58, CD300E, OTOP3, GPR142, KCNJ2, KCNJ16, BTBD17, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, MRPS7, HN1, SDK2, TMEM104, NA NA NA NA NA NA NA NA NA LTS-026 C17orf80, GPRC5C, MAP2K6, MIF4GD, CASKIN2, SLC25A19, RPL38, CPSF4L, SMIM5, DNAI2, SUMO2, SOX9, SSTR2, ARMC7, NUP85, MYO15B, FAM104A, MGC16275, SLC16A5, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, TMEM94) 0.218976668678815 121 0.0551882915178678 0.992888307185645 5087 0.507727607179589 3 3 0 -6.74374907635929 LTS-026 NA NA NA NA LTS-026 chr17 73637545 73643487 5943 * c(SMIM6, RECQL5) NA 0 NA 0.711 1 NA NA NA NA NA LTS-026 chr17 73643488 77082314 3438827 * c(SMIM6, TNRC6C-AS1, C17orf99, MIR4316, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4738, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, METTL23, CANT1, AFMID, MGAT5B, TMC8, AANAT, TRIM65, UNC13D, EVPL, FOXJ1, JMJD6, EXOC7, WBP2, GALK1, UBALD2, TMEM235, SAP30BP, H3F3B, BIRC5, ZACN, ITGB4, LGALS3BP, FLJ45079, MXRA7, ACOX1, ST6GALNAC1, PRPSAP1, USP36, TNRC6C, NA NA NA NA NA NA NA NA NA LTS-026 UBE2O, SEC14L1, SRSF2, ENGASE, MRPL38, SNHG20, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, PRCD, MFSD11, RHBDF2, QRICH2, FBF1, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SYNGR2, CYTH1, RECQL5, PGS1) 0.220677123388032 101 0.0445957219455138 0.950701031234103 5100 0.221372442791529 3 3 0 -6.92979534954043 LTS-026 NA NA NA NA LTS-026 chr17 77082315 77111850 29536 * c(RBFOX3, ENGASE) NA 0 NA 0.977444227060327 81 0.188448753553982 3 NA NA -5.76527731292735 LTS-026 chr17 77111851 77111855 5 * RBFOX3 0 1 NA 1.77 1 NA NA NA NA NA LTS-026 chr17 77111856 80363378 3251523 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, MIR4739, MIR4740, MIR4730, ALYREF, BAIAP2, PPP1R27, SLC38A10, TBC1D16, CSNK1D, TEPSIN, RBFOX3, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, ARHGDIA, TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, NA NA NA NA NA NA NA NA NA LTS-026 PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, SGSH, ACTG1, MIR657, ASPSCR1, CARD14, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, SLC16A3, HGS, CD7, MAFG-AS1, AATK, EIF4A3) 0.171423254347539 106 0.0449359622219067 1.19105156182813 5034 0.488271797783039 4 4 0 -6.78923222320565 LTS-026 NA NA NA NA LTS-026 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 1.172 1 NA NA NA NA NA LTS-026 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.230564871157258 3 0.0295972971738975 2.25552058466829 39 0.933729807586889 7 6 1 -6.73680073930233 LTS-026 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.991 1 NA NA NA NA NA LTS-026 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.167641839078452 23 0.0281953238070603 1.22966668039472 881 0.302999065286756 5 5 0 -6.85055903830924 LTS-026 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.4625992644999 13 0.230174209386427 5 NA NA -5.76511357353927 LTS-026 chr18 116845 203081 86237 * c(ROCK1P1, USP14) 0.488 1 NA 0.943199859406595 103 0.22647370077049 3 3 0 -5.77044024852634 LTS-026 chr18 203082 3603812 3400731 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.452368612326196 55 0.0323284594889595 0.870244278993493 1809 0.286081673531772 2 1 1 -7.05110542609025 LTS-026 chr18 3603813 6046717 2442905 * c(MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LINC00667, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, L3MBTL4, DLGAP1) 0.473932660712488 5 0.0193984535466103 0.987763026803518 471 0.207778003263785 2 1 1 -9.70348375476673 LTS-026 chr18 6046718 6093562 46845 * L3MBTL4 NA 0 NA 0.960465270853698 15 0.177967814104525 3 NA NA -5.76751999800216 LTS-026 chr18 6093563 6138143 44581 * L3MBTL4 NA 0 NA 1.391 1 NA NA NA NA NA LTS-026 chr18 6138144 6302059 163916 * L3MBTL4 0.234 1 NA 1.51637151207867 53 0.323499057275373 6 6 0 -5.76656261489804 LTS-026 chr18 6302060 11753013 5450954 * c(LINC01387, LOC100192426, MIR4317, RALBP1, RAB31, APCDD1, RAB12, ANKRD12, MTCL1, GNAL, LAMA1, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, PIEZO2, ARHGAP28, TXNDC2, NAPG, L3MBTL4, VAPA, PPP4R1) 0.305238354289622 52 0.0698758325593854 1.49261566565498 2339 0.416959053237638 5 4 1 -6.8198777509886 LTS-026 chr18 11753014 11753610 597 * GNAL NA 0 NA 1.127 1 NA NA NA NA NA LTS-026 chr18 11753611 14866503 3112893 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, ZNF519, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, RNMT) 0.321838443271936 46 0.0643463041666216 1.35631159439199 1838 0.354426379571147 5 4 1 -6.84466611000212 LTS-026 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.63570846967018 33 0.743152039992796 6 NA NA -5.76452816906362 LTS-026 chr18 18529727 18691766 162040 * ROCK1 0.454 1 NA 0.988897200321951 195 0.170501708398321 3 3 0 -5.7674268010948 LTS-026 chr18 18691767 22059736 3367970 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, ANKRD29, ABHD3, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.392684606894081 31 0.0902822217819902 0.948000014728238 2365 0.211733715339056 3 2 1 -6.96370658207146 LTS-026 chr18 22059737 29237934 7178198 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, ZNF521, KCTD1, AQP4, HRH4, SS18, TAF4B, TTR, PCAT18, LOC729950, CHST9, B4GALT6) 0.450162130958662 24 0.0379747246223712 1.11946567551218 1706 0.268782947457272 4 2 2 -7.22465579901532 LTS-026 chr18 29237935 44757344 15519410 * c(ZSCAN30, MIR4319, MIR4318, TCEB3CL2, MIR3975, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, HAUS1, LOXHD1, INO80C, C18orf25, SLC25A52, TCEB3C, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, CCDC178, MIR187, MEP1B, WBP11P1, RNF165, ATP5A1, IER3IP1, TCEB3B, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, EPG5, RIT2, KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, NA NA NA NA NA NA NA NA NA LTS-026 SYT4, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, C18orf21, HDHD2, ZNF397, NOL4, PSTPIP2, PIAS2, B4GALT6) 0.411542103873154 106 0.094247913411332 1.03790099990365 5210 0.458600717028816 3 2 1 -6.75676919587451 LTS-026 NA NA NA NA LTS-026 chr18 44757345 44907021 149677 * SKOR2 NA 0 NA 1.0270774607505 76 0.337057224304925 3 NA NA -5.76445873611972 LTS-026 chr18 44907022 45358109 451088 * character(0) 0.295 1 NA 0.775361451059578 9 0.0703511036002832 2 2 0 -5.99556393183679 LTS-026 chr18 45358110 47339788 1981679 * c(SNORD58C, MIR1539, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, SNORD58B, SNORD58A, SMAD2, SMAD7, C18orf32, DYM, RPL17, LIPG, CTIF) 0.311053632506152 22 0.0622391178617418 0.775465648120152 798 0.205278664569382 2 2 0 -7.10404889236862 LTS-026 chr18 47339789 47339798 10 * ACAA2 0.431 1 NA 0.261 1 NA NA NA NA NA LTS-026 chr18 47339799 63549123 16209325 * c(LINC01630, MIR4320, CDH7, LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, ACAA2, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, DCC, SKA1, CFAP53, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, DYNAP, BOD1L2, HMSD, LOC284294, GRP, RAX, CXXC1, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, SMAD4, MBD1, MC4R, ME2, MYO5B, NARS, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, NA NA NA NA NA NA NA NA NA LTS-026 SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, SCARNA17, SNORA37, TCF4, CCDC68, MRO, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, TXNL1, ONECUT2, VPS4B) 0.334842784198736 150 0.0819069434330835 0.632561488151238 6567 0.300998870176936 1 1 0 -6.76065559965587 LTS-026 NA NA NA NA LTS-026 chr18 63549124 65180290 1631167 * c(MIR5011, CDH19, DSEL) NA 0 NA 0.743121938877169 342 0.21511687806097 2 NA NA -6.00468515694144 LTS-026 chr18 65180291 77474626 12294336 * c(LOC100131655, LINC01541, LOC100505817, TSHZ1, CD226, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, GALR1, RTTN, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, NFATC1, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, NETO1, CNDP1, CTDP1, DSEL, SOCS6, ZNF516) 0.355325128425592 50 0.0783075595172715 0.623656078611004 2833 0.155609120913236 1 1 0 -6.88842008656522 LTS-026 chr18 77474627 78005362 530736 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, HSBP1L1, RBFA, PQLC1, PARD6G, CTDP1) NA 0 NA 0.605929764430632 526 0.130980260512235 1 NA NA -5.81321913899166 LTS-026 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.436 1 NA 0.648766666157437 17 0.196222056834178 1 1 0 -5.76518308867899 LTS-026 chr19 282754 8994285 8711532 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-026 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, ZNF558, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, OR2Z1, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 ANGPTL4, MARCH2, CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, MBD3L1, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MIDN, DPP9, R3HDM4, TMEM259, TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, MUC16, APBA3, SAFB2, CD70, CDC34) 0.441949995356672 440 0.074378195362151 0.777238723503194 14974 0.242655627222009 2 1 1 -7.08863870177063 LTS-026 NA NA NA NA LTS-026 chr19 8994286 9000185 5900 * MUC16 0.279 1 NA 0.745245443998564 47 0.14698158241398 2 2 0 -5.76624706738406 LTS-026 chr19 9000186 9062425 62240 * MUC16 0.348983616135824 25 0.131903095743302 0.804217997884319 460 0.510108348202926 1 1 0 -6.74074146903437 LTS-026 chr19 9062426 9075346 12921 * MUC16 0.46 1 NA 0.816725855328029 265 0.153714074858503 2 2 0 -5.76447735402686 LTS-026 chr19 9075347 12224133 3148787 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, OR7D4, OR7G1, OR1M1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, OR7D2, ZNF433, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, OR7E24, ZNF561-AS1, ZNF763, ZNF844, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, NA NA NA NA NA NA NA NA NA LTS-026 C3P1, ZNF788, OR7G2, OR7G3, LDLR, ZNF833P, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF878, ZNF69, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, ZNF700, ZNF439, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 S1PR2, ZNF561, OLFM2, MUC16, RAB3D, KEAP1) 0.441560359461016 145 0.0789459973531546 0.771924980417128 5973 0.243688700344819 2 1 1 -6.89947156547596 LTS-026 NA NA NA NA LTS-026 chr19 12224134 13915629 1691496 * c(ZNF625-ZNF20, ZNF443, RNASEH2A, KLF1, NACC1, ZNF563, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, C19orf53, HOOK2, TNPO2, JUNB, ZNF788, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, ZNF44, BEST2, TRMT1, ZNF490, RAD23A, ZSWIM4, PRDX2, ZNF20, ZNF136, CACNA1A, C19orf43, ZNF442, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, GADD45GIP1, ZNF799, ZNF625, IER2) 0.406466386812672 44 0.0738684763416721 0.923187779941962 2771 0.199526587916269 3 2 1 -6.97661457960109 LTS-026 chr19 13915630 13947292 31663 * c(LOC284454, ZSWIM4) 0.315 1 NA 0.936454687043325 95 0.220846672222107 3 3 0 -5.76719197405116 LTS-026 chr19 13947293 14583638 636346 * c(LOC100507373, DDX39A, MISP3, RLN3, ADGRL1, LOC284454, NANOS3, PALM3, MIR181C, CC2D1A, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RFX1, C19orf67, C19orf57, PODNL1, SAMD1, DCAF15, IL27RA, ADGRE5) 0.36654991260062 11 0.128832731583525 0.948227769861756 1208 0.238531240790279 3 2 1 -6.80794529997393 LTS-026 chr19 14583639 14584142 504 * PTGER1 NA 0 NA 1.091 1 NA NA NA NA NA LTS-026 chr19 14584143 18369270 3785128 * c(TMEM221, MIR1470, AKAP8, B3GNT3, KLF2, IFI30, CHERP, GIPC1, ILVBL, CYP4F8, PGLYRP2, CCDC124, NXNL1, CIB3, CALR3, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, LINC00905, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, BRD4, CASP14, PGLS, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, BABAM1, ADGRE2, DNAJB1, IL12RB1, INSL3, JAK3, SLC27A1, NA NA NA NA NA NA NA NA NA LTS-026 KCNN1, CLEC17A, CYP4F24P, OR7A10, CYP4F3, RAB8A, MYO9B, NDUFB7, NOTCH3, PDE4C, PIK3R2, MAP1S, USE1, PTGER1, ANO8, CYP4F11, EPS15L1, WIZ, RAB3A, RPL18A, RASAL3, MRPL34, SLC1A6, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, DDA1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, EPHX3, SLC35E1, KIAA1683, PLVAP, USHBP1, C19orf44, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, HAUS8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MVB12A, MED26, TECR) 0.373543375934514 128 0.0664627582059792 0.971604928283852 6407 0.263789615898857 3 2 1 -6.90026907850625 LTS-026 NA NA NA NA LTS-026 chr19 18369271 18375563 6293 * KIAA1683 0.418 1 NA 1.07039265186337 11 0.166209998605269 3 3 0 -5.76474022800181 LTS-026 chr19 18375564 19905448 1529885 * c(MEF2B, MIR3188, MIR3189, SUGP2, CERS1, COPE, LRRC25, NR2C2AP, COMP, NCAN, CILP2, SSBP4, CRTC1, MAU2, FKBP8, TMEM59L, LSM4, GDF1, SLC25A42, LINC00663, JUND, YJEFN3, HAPLN4, BORCS8-MEF2B, ZNF506, NDUFA13, GMIP, ISYNA1, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, KLHL26, ATP13A1, SUGP1, UPF1, BORCS8, UBA52, ZNF14, KXD1, PBX4, KIAA1683, ELL, TSSK6, RFXANK, LPAR2, CRLF1, ARMC6, ZNF101, HOMER3, NA NA NA NA NA NA NA NA NA LTS-026 GDF15) 0.413232696374322 41 0.0420915378784811 0.971463360730097 2835 0.218985041485633 3 2 1 -6.83479574265542 LTS-026 NA NA NA NA LTS-026 chr19 19905449 22952111 3046663 * c(ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, ZNF493, ZNF429, LINC00664, ZNF506, GOLGA2P9, ZNF253, ZNF492, LOC641367, ZNF826P, ZNF708, ZNF43, ZNF85, ZNF90, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682) 0.32375226367711 37 0.0833263870978863 0.777239209876839 1025 0.296056387009727 2 2 0 -7.05653105796824 LTS-026 chr19 22952112 24345121 1393010 * c(HAVCR1P1, ZNF730, ZNF681, ZNF675, ZNF728, RPSAP58, ZNF724, ZNF726, ZNF91, ZNF99, ZNF254) NA 0 NA 0.83818388960282 435 0.244948202543165 2 NA NA -5.76629051681168 LTS-026 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.379 1 NA 1.0537769153904 5 0.730861956870106 3 3 0 -5.7660734704985 LTS-026 chr19 29567135 35851221 6284087 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, LOC284395, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, UQCRFS1, USF2, KCTD15, PLEKHF1, NA NA NA NA NA NA NA NA NA LTS-026 CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.362439278981866 78 0.0507776374486689 1.09563593958152 3481 0.294347508775142 4 3 1 -7.22862827275743 LTS-026 NA NA NA NA LTS-026 chr19 35851222 35851237 16 * FFAR3 NA 0 NA 0.701 1 NA NA NA NA NA LTS-026 chr19 35851238 35863609 12372 * FFAR3 0.364505192889769 2 0.128693434175952 0.251483063600372 39 0.460601008247833 1 1 0 -6.77102525099895 LTS-026 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-026 chr19 35863628 41327280 5463653 * c(LINC01531, LOC100129935, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIA-RAB4B, RAB4B-EGLN2, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, DLL3, HCST, UPK1A, MAP4K1, EGLN2, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, C19orf47, COX6B1, COX7A1, HIPK4, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, TTC9B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, NA NA NA NA NA NA NA NA NA LTS-026 ZNF780B, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, AKT2, FBL, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, PLD3, ZNF345, CLIP3, GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, ZNF780A, C19orf54, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, LGALS13, SERTAD3, SERTAD1, HNRNPL, APLP1, ZNF260, ZNF546, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 LGALS7, SPRED3, LGALS17A, MAP3K10, NFKBIB, NPHS1, ATP4A, ZNF571, RAB4B, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMC4, PSMD8, LRFN1, ZFP14, ZNF529, PRX, SPTBN4, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, BLVRB, PLEKHG2, LGALS7B, SNRPA, SUPT5H, MIR641, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, COQ8B, CNTD2, ITPKC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 ACTN4, MIA, DPF1, CAPNS1, WDR87, KIRREL2, LTBP4, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, NUMBL, TIMM50, SHKBP1, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.356382380338352 201 0.0742619941901275 1.0778114652465 10285 0.25863617471642 3 2 1 -7.08379207748874 LTS-026 NA NA NA NA LTS-026 chr19 41327281 41332171 4891 * character(0) 0.35 1 NA 0.504712743563803 17 0.397075281793975 0 0 0 -5.76468058569714 LTS-026 chr19 41332172 41356321 24150 * CYP2A6 NA 0 NA 0.488993278404802 41 0.274630026070552 0 NA NA -5.76592865070313 LTS-026 chr19 41356322 41381609 25288 * c(CYP2A6, CYP2A7) NA 0 NA 1.227 1 NA NA NA NA NA LTS-026 chr19 41381610 41383153 1544 * CYP2A7 0.315 1 NA 1.14119507308102 9 0.334199208723048 4 4 0 -5.7644382333088 LTS-026 chr19 41383154 44081400 2698247 * c(ERICH4, LOC100289650, MIR4323, PCAT19, LOC100505622, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, ZNF526, LYPD4, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, ERF, CYP2G1P, CIC, ETHE1, PRG1, LYPD3, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, GRIK5, GSK3A, CYP2S1, B3GNT8, PINLYP, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, POU2F2, ATP5SL, AXL, PSG1, PSG2, PSG3, PSG4, NA NA NA NA NA NA NA NA NA LTS-026 PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CD177, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, ZNF574, PSG10P, PHLDB3, TGFB1, XRCC1, B9D2, TEX101, CNFN, CEACAM21, CCDC97, ARHGEF1, CD79A) 0.301062111766278 68 0.102444206318624 1.19502646315669 3472 0.337998867702595 4 3 1 -6.82874494738711 LTS-026 NA NA NA NA LTS-026 chr19 44081401 50464453 6383053 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, EML2-AS1, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, ZNF234, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, PNKP, PTH2, SIGLEC11, CGB1, NA NA NA NA NA NA NA NA NA LTS-026 CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, CPT1C, ALDH16A1, NTN5, IRGQ, ZNF428, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, CADM4, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SNORD33, SNORD32A, GIPR, ZNF285, BBC3, DKKL1, C5AR2, DHDH, GPR4, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, IRF3, KCNA7, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, BCAM, MIR150, MIR330, IGFL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PLAUR, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, SMG9, IRGC, CABP5, PRRG2, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 GNG8, CD37, DHX34) 0.295191757583106 206 0.0736880169743181 1.1177574032981 12132 0.405265033426624 4 3 1 -7.10643571259847 LTS-026 NA NA NA NA LTS-026 chr19 50464454 50474618 10165 * SIGLEC16 NA 0 NA 0.156339397578276 39 0.201108194942112 0 NA NA -5.926628217642 LTS-026 chr19 50474619 50474946 328 * SIGLEC16 NA 0 NA 1.193 1 NA NA NA NA NA LTS-026 chr19 50474947 52132749 1657803 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, ZNF473, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, NA NA NA NA NA NA NA NA NA LTS-026 SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, MYH14, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.283646547648021 51 0.105476792354955 1.15650624109625 2951 0.353791792975344 4 3 1 -6.9263485088776 LTS-026 NA NA NA NA LTS-026 chr19 52132750 52133048 299 * SIGLEC5 NA 0 NA 0.755 1 NA NA NA NA NA LTS-026 chr19 52133049 52196080 63032 * c(SIGLEC14, MIRLET7E, MIR99B, SIGLEC5) NA 0 NA 0.485331716351278 40 0.457382396261877 0 NA NA -5.76560776758939 LTS-026 chr19 52196081 53770080 1574000 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, MIRLET7E, MIR125A, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.293405637068232 52 0.0679197579083495 1.13762650758632 2037 0.269953626046899 4 3 1 -7.07209979667945 LTS-026 chr19 53770081 53770181 101 * VN1R4 NA 0 NA 1.461 1 NA NA NA NA NA LTS-026 chr19 53770182 53818565 48384 * c(BIRC8, VN1R4, FAM90A27P) 0.282927066400237 7 0.138544818259893 1.51748120789819 101 0.583991245526408 5 4 1 -6.73876257095373 LTS-026 chr19 53818566 53818589 24 * character(0) NA 0 NA 0.89 1 NA NA NA NA NA LTS-026 chr19 53818590 54800203 981614 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR4752, MIR371B, LILRB2, LILRB5, LILRB3, LILRA3, OSCAR, ZNF813, TMC4, TPM3P9, ZNF525, PRPF31, LOC284379, VSTM1, TFPT, ZNF761, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, NA NA NA NA NA NA NA NA NA LTS-026 MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, ZNF765, NLRP12, MYADM, ZNF845) 0.314998317711095 53 0.0906617743564673 1.10452102445357 2177 0.323594097720469 4 3 1 -6.83130548838629 LTS-026 NA NA NA NA LTS-026 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.117661419028946 39 0.258915844059403 0 NA NA -6.04187004427305 LTS-026 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.959 1 NA NA NA NA NA LTS-026 chr19 54818558 55248041 429484 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.281063303902568 32 0.0693457254421408 1.11999358056905 883 0.365941172016662 5 4 1 -6.85445542841726 LTS-026 chr19 55248042 55249998 1957 * KIR2DL3 NA 0 NA 0.779 1 NA NA NA NA NA LTS-026 chr19 55249999 55299856 49858 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.354617149071002 7 0.0971398108766064 0.836822853691627 46 1.05434321795895 1 1 0 -6.73648957897015 LTS-026 chr19 55299857 55301506 1650 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.478 1 NA NA NA NA NA LTS-026 chr19 55301507 56249765 948259 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628, NCR1) 0.275369052159536 94 0.0719547706446989 1.149905104351 2621 0.355276516927056 5 4 1 -6.95093009813601 LTS-026 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 3.358 1 NA NA NA NA NA LTS-026 chr19 56270381 56284084 13704 * c(RFPL4A, RFPL4AL1) 0.265734353750848 2 0.0700035713374682 2.59783513656632 47 1.40931211430352 17 13 4 -6.73389562766266 LTS-026 chr19 56284085 56459503 175419 * c(NLRP13, NLRP8, NLRP4, NLRP11, RFPL4AL1) 0.308770437063603 13 0.060109088864352 1.20048397039437 293 0.526267194793719 5 4 1 -6.7697873079932 LTS-026 chr19 56459504 59082605 2623102 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, NA NA NA NA NA NA NA NA NA LTS-026 ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.328655016937479 113 0.0507704157337718 1.03201784269624 4529 0.255824988670528 4 3 1 -7.32548655180075 LTS-026 NA NA NA NA LTS-026 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 1.05705823971769 9 0.139297443543583 3 NA NA -5.76446796013911 LTS-026 chr20 68260 76962 8703 * DEFB125 0.425 1 NA 1.08376604273129 11 0.320513990617911 3 3 0 -5.76460277258275 LTS-026 chr20 76963 1559302 1482340 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.436525120520268 58 0.0405086571076536 1.02307287140106 1933 0.255749267147343 4 2 2 -7.10454407134861 LTS-026 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.071 1 NA NA NA NA NA LTS-026 chr20 1569093 1592349 23257 * SIRPB1 NA 0 NA 0.0717229005943326 39 0.00492836675992949 0 NA NA -25.1616088969528 LTS-026 chr20 1592350 1600390 8041 * SIRPB1 NA 0 NA 1.152 1 NA NA NA NA NA LTS-026 chr20 1600391 8709861 7109471 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PLCB1, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, TMX4, GPCPD1, CPXM1, NA NA NA NA NA NA NA NA NA LTS-026 MAVS, EBF4, PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.429774738247307 146 0.0550986065867686 1.04263183869198 5578 0.266745306574351 3 2 1 -6.93397565209509 LTS-026 NA NA NA NA LTS-026 chr20 8709862 8713863 4002 * PLCB1 NA 0 NA 1.174 1 NA NA NA NA NA LTS-026 chr20 8713864 25829290 17115427 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, NA NA NA NA NA NA NA NA NA LTS-026 LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, KIZ, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.444674871449312 149 0.0740129957801312 1.18087919615283 6986 0.39173803759599 4 2 2 -6.79280992143244 LTS-026 NA NA NA NA LTS-026 chr20 25829291 25829292 2 * FAM182B 0.264 1 NA 2.057 1 NA NA NA NA NA LTS-026 chr20 25829293 26061832 232540 * c(LOC100134868, FAM182A, FAM182B) 0.323631655258023 7 0.155646424706157 1.37113448664628 13 1.31309687771177 4 3 1 -6.74250875904266 LTS-026 chr20 26061833 26061858 26 * FAM182A NA 0 NA 0.337 1 NA NA NA NA NA LTS-026 chr20 26061859 26188981 127123 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.321434027120025 13 0.115248672054199 0.597732837458325 61 0.583671740872296 1 1 0 -6.77009192808162 LTS-026 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.568430522456082 3 0.177246532641215 1 NA NA -5.76441979495181 LTS-026 chr20 29625845 29625855 11 * FRG1BP 0.138 1 NA 1.365 1 NA NA NA NA NA LTS-026 chr20 29625856 29652191 26336 * c(MLLT10P1, FRG1BP) 0.348226772009951 17 0.0839641905464326 0.96354251124411 40 0.280738210702993 4 3 1 -6.74684245106242 LTS-026 chr20 29652192 29965014 312823 * c(DEFB118, DEFB115, DEFB116, DEFB119, FRG1BP) 0.466 1 NA 1.17448589232631 59 0.416673907203795 4 4 0 -5.76534875232229 LTS-026 chr20 29965015 33703607 3738593 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, ASIP, BPIFA1, NA NA NA NA NA NA NA NA NA LTS-026 CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.455492142164528 38 0.0818257698681121 1.14100601274041 5129 0.23862510963608 4 2 2 -6.91905038853121 LTS-026 NA NA NA NA LTS-026 chr20 33703608 33880247 176640 * c(MMP24-AS1, PROCR, MMP24, FAM83C, EIF6, EDEM2) NA 0 NA 1.17472985580163 309 0.242160391504718 4 NA NA -5.76595708607808 LTS-026 chr20 33880248 33890361 10114 * character(0) NA 0 NA 0.834 1 NA NA NA NA NA LTS-026 chr20 33890362 33997308 106947 * c(UQCC1, GDF5) 0 1 NA 1.04646695806948 147 0.317713029769395 3 3 0 -5.76485798038339 LTS-026 chr20 33997309 35736948 1739640 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.348768205321238 12 0.206467254722698 1.08293118091718 2795 0.278077923386475 3 2 1 -6.8192960142639 LTS-026 chr20 35736949 35738841 1893 * MROH8 0.402 1 NA 1.06269269501271 9 0.690278748043136 3 3 0 -5.76441432323686 LTS-026 chr20 35738842 35867276 128435 * c(MROH8, RPN2) 0.461383243066192 8 0.0396088013307288 1.08644342337909 219 0.315239626903472 4 2 2 -7.08227716349457 LTS-026 chr20 35867277 35869604 2328 * RPN2 NA 0 NA 1.252 1 NA NA NA NA NA LTS-026 chr20 35869605 36959629 1090025 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, GHRH, NNAT, CTNNBL1, RPRD1B, RPN2, MANBAL, BPI, SRC, TGM2, KIAA1755, TTI1) 0.467790059368514 27 0.0263132023019741 1.17108417559327 1029 0.246904856099467 4 2 2 -7.74864809524346 LTS-026 chr20 36959630 37204858 245229 * c(SNHG11, SNORA71B, SNORA71A, SNHG17, LBP, RALGAPB, BPI, SNORA71E, SNORA71C, SNORA71D) 0 1 NA 1.13900434955699 303 0.264781019206298 4 4 0 -5.77199212395271 LTS-026 chr20 37204859 48808950 11604092 * c(ADA, ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TRERNA1, SGK2, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FITM2, WFDC12, SPATA25, OCSTAMP, SLC32A1, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, CSE1L, ADIG, GTSF1L, WFDC5, WFDC13, EYA2, ZHX3, SLC9A8, ZMYND8, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORD12C, NA NA NA NA NA NA NA NA NA LTS-026 TP53TG5, WFDC10B, LINC00494, HNF4A, LOC339568, ARHGAP40, KCNB1, KCNS1, TMEM189, TMEM189-UBE2V1, SPINT4, MMP9, ZFAS1, MYBL2, SLC35C2, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, DDX27, ZNF334, DBNDD2, RNF114, SULF2, EPPIN, RALGAPB, JPH2, ZNFX1, PTGIS, SLC12A5, PREX1, NCOA5, KCNK15, DHX35, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, SLPI, SNAI1, STAU1, STK4, SNORD12, TNNC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, SLC2A10, FAM83D, NCOA3, CHD6, TOX2, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2, MAFB) 0.382839964634756 185 0.0635551002186865 1.14408514287677 9794 0.336542202102988 4 3 1 -7.15763916625797 LTS-026 NA NA NA NA LTS-026 chr20 48808951 52193698 3384748 * c(MIR3194, ATP9A, CEBPB, TSHZ2, FAM65C, ADNP, MOCS3, LINC01270, KCNG1, NFATC2, BCAS4, ZFP64, SALL4, PTPN1, MIR645, ZNF217, PARD6B, DPM1) 0.322834195953452 24 0.0380108441811323 1.36905407927536 1562 0.33238726537052 5 4 1 -7.03124936837332 LTS-026 chr20 52193699 52193760 62 * ZNF217 NA 0 NA 1.105 1 NA NA NA NA NA LTS-026 chr20 52193761 52198340 4580 * ZNF217 0.302 1 NA 1.10437330049686 15 0.26368446150294 3 3 0 -5.76466556109113 LTS-026 chr20 52198341 52553610 355270 * c(SUMO1P1, ZNF217) 0.192 1 NA 1.1481316435439 39 0.285592047882579 4 4 0 -5.77151276861663 LTS-026 chr20 52553611 59829847 7276237 * c(MIR298, CDH4, MIR4325, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, SYCP2, FAM210B, PHACTR3, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, SPO11, GNAS, C20orf197, MIR646HG, FAM209B, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, DOK5, PMEPA1, CASS4, RAB22A, CDH26, FAM217B, BMP7, NA NA NA NA NA NA NA NA NA LTS-026 AURKA, TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, BCAS1, STX16, VAPB) 0.201037949470754 108 0.0437029487881482 1.06368065896294 4090 0.26842904714661 3 3 0 -6.94835415375044 LTS-026 NA NA NA NA LTS-026 chr20 59829848 59829907 60 * CDH4 NA 0 NA 1.239 1 NA NA NA NA NA LTS-026 chr20 59829908 60986125 1156218 * c(CDH4, MIR1257, MIR4758, ADRM1, HRH3, RBBP8NL, LSM14B, SS18L1, MTG2, LAMA5, PSMA7, RPS21, TAF4, CABLES2, OSBPL2) 0.184267628877061 47 0.0403024527364929 1.20904354124084 1330 0.313789997954337 4 4 0 -6.73322730618432 LTS-026 chr20 60986126 60987732 1607 * RBBP8NL NA 0 NA 1.697 1 NA NA NA NA NA LTS-026 chr20 60987733 61272161 284429 * c(MIR1-1HG, GATA5, RBBP8NL, C20orf166-AS1, MIR1-1, MIR133A2) 0.17284924753468 8 0.0208733425347123 1.38736021436348 180 0.52288707028206 10 9 1 -6.91704972700777 LTS-026 chr20 61272162 61273578 1417 * character(0) 0.187 1 NA 1.30131159190753 33 0.221616893192926 4 4 0 -5.76450250444731 LTS-026 chr20 61273579 62153676 880098 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, CHRNA4, BHLHE23, NKAIN4, COL9A3, EEF1A2, SLCO4A1, KCNQ2, MIR124-3, NTSR1, YTHDF1, GID8, MRGBP, ARFGAP1, COL20A1, SLC17A9, LOC63930, HAR1A, HAR1B, PPDPF, BIRC7) 0.149004243889895 37 0.0570938061675932 1.30964660814803 1828 0.429605377481707 5 5 0 -6.76726903960984 LTS-026 chr20 62153677 62160040 6364 * PTK6 NA 0 NA 2.068 1 NA NA NA NA NA LTS-026 chr20 62160041 62251222 91182 * c(GMEB2, PTK6, SRMS, FNDC11, HELZ2) 0.0984509915608109 9 0.0250571568840344 2.29815260727209 488 0.516532536074978 10 10 0 -6.74362671542208 LTS-026 chr20 62251223 62271358 20136 * c(GMEB2, STMN3) NA 0 NA 0.741 1 NA NA NA NA NA LTS-026 chr20 62271359 62871957 600599 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, TNFRSF6B) 0.164723529164818 19 0.0538690745510117 1.27268771151009 1637 0.338339514817925 5 5 0 -6.76653076836201 LTS-026 chr20 62871958 62959313 87356 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.26027739480597 127 0.428212274060475 4 NA NA -5.76489137283039 LTS-026 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.408 1 NA 0.379886883630529 11 0.35802861744432 0 0 0 -5.77459262636199 LTS-026 chr21 9907223 11059877 1152655 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.331491787164777 46 0.113076368960943 0.870800014337635 169 0.45575072867037 2 2 0 -6.91352041191117 LTS-026 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.840429013525911 5 0.0653628334759135 2 NA NA -5.76552603243433 LTS-026 chr21 14745307 15481157 735851 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, NA) 0.337 1 NA 0.635935646756669 81 0.182918564488594 1 1 0 -5.76454149640559 LTS-026 chr21 15481158 17102824 1621667 * c(SAMSN1-AS1, LIPI, ABCC13, USP25, LOC388813, RBM11, SAMSN1, HSPA13, NRIP1) 0.305461301248251 13 0.0519428927050092 0.742216336503379 534 0.212030804725656 2 2 0 -7.25099683756034 LTS-026 chr21 17102825 17115561 12737 * USP25 NA 0 NA 0.914 1 NA NA NA NA NA LTS-026 chr21 17115562 30244948 13129387 * c(LINC01549, MIR4759, RNU6-67P, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, C21orf91-OT1, LINC00314, GABPA, D21S2088E, LINC00515, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, ADAMTS1) 0.21580960759571 48 0.0519307879546291 0.997814550693806 1898 0.317298980524862 3 3 0 -6.77069902565909 LTS-026 chr21 30244949 34635304 4390356 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, PAXBP1-AS1, LINC00159, RWDD2B, OLIG2, USP16, CCT8, OLIG1, KRTAP13-1, TCP10L, LINC00189, KRTAP15-1, LTN1, CLDN17, LINC00307, KRTAP13-4, GRIK1, N6AMT1, HUNK, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, NA NA NA NA NA NA NA NA NA LTS-026 KRTAP22-1, KRTAP20-3, IFNAR2, IL10RB, KRTAP26-1, C21orf62-AS1, MIS18A, C21orf62, MRAP, C21orf59, MAP3K7CL, BACH1, SCAF4, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SOD1, SNORA80A, TIAM1, KRTAP19-8, LINC01548, URB1-AS1, SYNJ1, CLDN8, PAXBP1, URB1) 0.242687643194188 69 0.0642561443650454 0.86325422878052 3159 0.304252870078185 2 2 0 -6.88738731593482 LTS-026 NA NA NA NA LTS-026 chr21 34635305 48022230 13386926 * c(LOC100129027, LOC100133286, IL10RB-AS1, MIR3197, ITGB2-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, RRP1B, NA NA NA NA NA NA NA NA NA LTS-026 DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, LINC00319, AATBC, DNMT3L, DONSON, HLCS, HMGN1, AIRE, IFNAR1, IFNAR2, IFNGR2, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00114, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, TSPEAR, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, AGPAT3, PWP2, S100B, PRDM15, LOC642852, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SON, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, U2AF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, MCM3AP, RSPH1, UMODL1, ABCG1, CRYZL1, DOPEY2, KCNE2) 0.272330698181798 420 0.0658933960769267 0.797320070828256 13617 0.498344413073691 2 2 0 -6.78098455305735 LTS-026 NA NA NA NA LTS-026 chr21 48022231 48084993 62763 * c(PRMT2, S100B) NA 0 NA 0.744890507801929 99 0.221369101542441 2 NA NA -5.77309386036265 LTS-026 chr22 16157787 16157883 97 * character(0) 0.426 1 NA 1.117 1 NA NA NA NA NA LTS-026 chr22 16157884 20307418 4149535 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-026 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.438411239546673 99 0.09575792763531 1.12159201114299 4450 0.361617850179464 4 2 2 -6.84368046520223 LTS-026 NA NA NA NA LTS-026 chr22 20307419 20307499 81 * DGCR6L NA 0 NA 0.834 1 NA NA NA NA NA LTS-026 chr22 20307500 20717934 410435 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0.443 1 NA 0.393326689986178 39 0.323613898752181 0 0 0 -5.80316274404406 LTS-026 chr22 20717935 20717994 60 * character(0) NA 0 NA 0.973 1 NA NA NA NA NA LTS-026 chr22 20717995 22300536 1582542 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29, PPM1F) 0.439714560960656 48 0.0765716185407978 1.08072746526949 2248 0.276607013710651 4 2 2 -6.89488790088337 LTS-026 chr22 22300537 22309908 9372 * PPM1F NA 0 NA 0.772 1 NA NA NA NA NA LTS-026 chr22 22309909 22312399 2491 * TOP3B NA 0 NA 0.400284177156299 42 0.296338543764265 0 NA NA -5.76462071097679 LTS-026 chr22 22312400 24340955 2028556 * c(DDTL, IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, C22orf15, DDT, PRAME, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, VPREB1, ZNF70, TOP3B, GGTLC2, GUSBP11, DERL3, RAB36, BMS1P20) 0.438707570153014 60 0.0474583939102702 1.08605167405302 2083 0.408140438154604 4 2 2 -6.83377292676974 LTS-026 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 2.096 1 NA NA NA NA NA LTS-026 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 2.0884114109193 57 0.424258829620879 9 NA NA -5.76457966241643 LTS-026 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 1.108 1 NA NA NA NA NA LTS-026 chr22 24400149 28559517 4159369 * c(LOC100128531, MIR548J, MIR3199-2, MIR3199-1, SGSM1, ADORA2A, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, GRK3, TTC28, SPECC1L, CABIN1, SEZ6L, PITPNB, TFIP11, TMEM211, GGT1, GGT5, TTC28-AS1, POM121L9P, LRRC75B, SRRD, MN1, PIWIL3, MIAT, UPB1, SUSD2, ASPHD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, TPST2, MYO18B, KIAA1671, HPS4, IGLL3P, LRP5L) 0.404625133313741 33 0.150941351745195 1.05512704084369 3061 0.326055602884576 3 2 1 -6.7618515338454 LTS-026 chr22 28559518 29621128 1061611 * c(ZNRF3-AS1, CHEK2, EMID1, HSCB, CCDC117, TTC28, C22orf31, XBP1, KREMEN1, ZNRF3) 0.390238840225121 19 0.142142441530355 0.922375457334914 661 0.26665393203559 3 2 1 -6.82359920462079 LTS-026 chr22 29621129 29655371 34243 * EMID1 0.455 1 NA 0.930152024217017 71 0.168636370193718 3 3 0 -5.77042404233105 LTS-026 chr22 29655372 30844028 1188657 * c(MIR3653, SF3A1, RASL10A, GAS2L1, RFPL1S, EMID1, HORMAD2, AP1B1, CABP7, RNF215, EWSR1, SEC14L2, RHBDD3, UQCR10, LIF, NEFH, NF2, OSM, MTFP1, CCDC157, ZMAT5, RFPL1, GATSL3, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3) 0.454046248132505 54 0.0706518812901629 0.91929731739066 2200 0.26542888093512 2 1 1 -6.90543743217061 LTS-026 chr22 30844029 36002886 5158858 * c(HMGXB4, MIR3200, TOM1, MIR3909, MIR3928, LARGE-AS1, MIR4764, RFPL3S, RFPL3, RFPL2, PIK3IP1, SELENOM, DUSP18, MORC2-AS1, C22orf42, MORC2, PES1, RASD2, PATZ1, PISD, OSBP2, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, SEC14L3, INPP5J, SEC14L4, HMOX1, SLC35E4, LOC339666, SDC4P, LIMK2, MB, MCM5, DRG1, PLA2G3, RTCB, TUG1, EIF4ENIF1, SLC5A1, SMTN, SLC5A4, TCN2, TIMP3, SEC14L6, YWHAH, SYN3, RNF185, ISX, LARGE1, NA NA NA NA NA NA NA NA NA LTS-026 GAL3ST1, DEPDC5, SFI1) 0.448079953260464 56 0.0919022914231803 0.967483939836124 4322 0.232987517942439 3 2 1 -7.04257357563972 LTS-026 NA NA NA NA LTS-026 chr22 36002887 39826591 3823705 * c(LL22NC01-81G9.3, MIR4534, APOBEC3A_B, DNAL4, CACNG2, TAB1, DDX17, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, ELFN2, C1QTNF6, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, TMPRSS6, APOBEC3H, APOBEC3A, APOBEC3F, GCAT, CBX6, NPTXR, CBX7, SLC16A8, RBFOX2, SH3BP1, MAFF, APOL2, CBY1, SUN2, TXN2, TMEM184B, GGA1, SNORD43, CYTH4, APOBEC3C, CARD10, H1F0, TEX33, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MB, MFNG, MPST, MYH9, NA NA NA NA NA NA NA NA NA LTS-026 NCF4, EIF3L, PDGFB, POLR2F, TOMM22, PDXP, PVALB, RAC2, APOBEC3G, RPL3, FAM227A, SOX10, SSTR3, MIR658, MIR659, TST, NOL12, KCTD17, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, PLA2G6, C22orf23, GALR3, MICALL1, APOL1, EIF3D, SYNGR1, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.444055773657168 124 0.0791348827109999 0.925229119780317 6279 0.435031684685809 2 1 1 -6.89439559591836 LTS-026 NA NA NA NA LTS-026 chr22 39826592 39888216 61625 * c(LOC100506472, TAB1, MGAT3) 0 1 NA 0.987148944381355 140 0.17251381388602 3 3 0 -5.76566704805796 LTS-026 chr22 39888217 40708679 820463 * c(LOC100130899, FAM83F, ENTHD1, TNRC6B, ATF4, MIEF1, CACNA1I, RPS19BP1, GRAP2) 0.310364835942203 9 0.198773740720448 0.939247273718784 898 0.279661229518087 2 2 0 -6.85511365149575 LTS-026 chr22 40708680 40720704 12025 * TNRC6B 0.425 1 NA 0.921293704514688 69 0.177201076898192 3 3 0 -5.76674613448465 LTS-026 chr22 40720705 42522712 1802008 * c(NDUFA6-AS1, MIR1281, MIR4766, SLC25A17, TOB2, TNFRSF13C, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, WBP2NL, POLR3H, EP300, TNRC6B, ZC3H7B, XRCC6, CSDC2, DESI1, SGSM3, MCHR1, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, ACO2, PMM1, SEPT3, MKL1, RANGAP1, XPNPEP3, SREBF2, ST13, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, SMDT1, RBX1) 0.429841013400623 34 0.0877334319413865 0.915948979800366 3455 0.261585358498335 2 1 1 -6.8881058312876 LTS-026 chr22 42522713 42522905 193 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 1.641 1 NA NA NA NA NA LTS-026 chr22 42522906 42536425 13520 * c(NDUFA6-AS1, CYP2D7, CYP2D6) NA 0 NA 1.65461799422967 59 0.326952277763195 6 NA NA -5.76452782324456 LTS-026 chr22 42536426 42536618 193 * CYP2D7 NA 0 NA 0.249 1 NA NA NA NA NA LTS-026 chr22 42536619 45954018 3417400 * c(MIR1249, NUP50-AS1, EFCAB6-AS1, NUP50, PACSIN2, PHF21B, NFAM1, PNPLA5, CYP2D7, CYB5R3, FBLN1, TTLL12, KIAA0930, ARHGAP8, SERHL2, TTLL1, SAMM50, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, PARVB, OGFRP1, LINC00207, LINC00229, A4GALT, FAM118A, PRR5-ARHGAP8, PRR5, BIK, PARVG, EFCAB6, TCF20, TSPO, UPK3A, MPPED1, SCUBE1, PNPLA3, LDOC1L, POLDIP3, KIAA1644, RRP7BP, SERHL) 0.430543830884528 78 0.0859068498228567 0.953505283012301 3160 0.268489410727704 3 2 1 -6.93087182697528 LTS-026 chr22 45954019 45954269 251 * FBLN1 NA 0 NA 0.716 1 NA NA NA NA NA LTS-026 chr22 45954270 51007452 5053183 * c(LINC01310, LINC00899, MIR3201, MIR3619, MIR4763, MIR4762, MIR4535, PKDREJ, KLHDC7B, CPT1B, PRR34-AS1, CDPF1, GTSE1-AS1, TYMP, FBLN1, GRAMD4, MLC1, PLXNB2, BRD1, TBC1D22A, ATXN10, FAM19A5, LOC284933, NCAPH2, C22orf34, CHKB-CPT1B, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, DENND6B, PIM3, ODF3B, GTSE1, MOV10L1, PPARA, TTC38, PRR34, MIOX, TRMU, MAPK11, PANX2, MAPK12, SBF1, SYCE3, CERK, LOC730668, NA NA NA NA NA NA NA NA NA LTS-026 WNT7B, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, TUBGCP6, NA, LMF2, CELSR1, PPP6R2, ZBED4, SCO2) 0.441362404475787 136 0.0476971148010924 0.836403018888569 4711 0.19196804929825 2 1 1 -6.77034438299891 LTS-026 NA NA NA NA LTS-026 chr22 51007453 51009953 2501 * c(CPT1B, CHKB-CPT1B) 0.337 1 NA 0.81719877882423 31 0.140507888272035 2 2 0 -5.76442446788341 LTS-026 chr22 51009954 51182485 172532 * c(CHKB-AS1, CHKB, CPT1B, MAPK8IP2, CHKB-CPT1B, ARSA, ACR, SHANK3) 0.281164118014331 10 0.161583449372487 0.818847890188619 474 0.182197542913371 2 2 0 -6.73630757780862 LTS-026 chr22 51182486 51220846 38361 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.709078783766091 75 0.185242031110896 1 NA NA -5.77189655737895 LTS-026 chrX 2699993 2733641 33649 * XG 0.284 1 NA 0.701123174676072 53 0.169357449122543 1 1 0 -5.77068027491796 LTS-026 chrX 2733642 9687475 6953834 * c(LINC01546, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, VCX2, VCX3A, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.259482780520971 44 0.0925327066341419 0.780802653357582 1512 0.282300253442713 2 2 0 -6.9194546287597 LTS-026 chrX 9687476 9693397 5922 * TBL1X 0.308 1 NA 0.702624642123374 11 0.132942913244062 1 1 0 -5.76628412302608 LTS-026 chrX 9693398 11785440 2092043 * c(CLDN34, MSL3, CLCN4, AMELX, HCCS, SHROOM2, ARHGAP6, MID1, GPR143, WWC3) 0.305884823104617 16 0.0570405922713524 0.785342564075774 1126 0.196565150933917 2 2 0 -7.05281516242771 LTS-026 chrX 11785441 15288189 3502749 * c(GS1-600G8.3, LINC01203, MSL3, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, EGFL6, GLRA2, GPM6B, TLR8-AS1, TLR7, TLR8, GEMIN8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.299583739227507 19 0.047021271782035 0.713964790204119 1594 0.161516383057562 1 1 0 -8.22811292596814 LTS-026 chrX 15288190 15300089 11900 * c(ASB11, ASB9) NA 0 NA 0.506 1 NA NA NA NA NA LTS-026 chrX 15300090 16888491 1588402 * c(PIR-FIGF, CA5B, ASB11, VEGFD, GRPR, CA5BP1, PIGA, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, MAGEB17, BMX, S100G, ZRSR2, PIR, INE2, AP1S2, SYAP1) 0.348058892969516 20 0.124446257688335 0.619894106847659 1370 0.210159463111907 1 1 0 -6.75087236720218 LTS-026 chrX 16888492 16888568 77 * RBBP7 NA 0 NA 0.698 1 NA NA NA NA NA LTS-026 chrX 16888569 23416939 6528371 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, PTCHD1, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, RPS6KA3, RS1, SCML1, SMS, CDKL5, LOC729609, REPS2) 0.353335055849657 21 0.0943159583527623 0.668085879781591 3504 0.171933671021194 1 1 0 -7.0037508612843 LTS-026 chrX 23416940 24329848 912909 * c(ZFX-AS1, PRDX4, SUPT20HL2, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.319291616881818 9 0.131232088724942 0.599569268193076 793 0.150452986807773 1 1 0 -6.85699293883274 LTS-026 chrX 24329849 38664696 14334848 * c(SUPT20HL1, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, TAB3, HYPM, GK, CFAP47, MAGEB18, LANCL3, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, OTC, PDK3, FTHL17, POLA1, PRRG1, MID1IP1, RPGR, NA, SCARNA23, DYNLT3, TSPAN7, XK, CXorf21, TMEM47, SRPX, SYTL5, PCYT1B) 0.346783958833891 48 0.0918380835998377 0.670700961482652 3561 0.161589333146989 1 1 0 -7.46315966728651 LTS-026 chrX 38664697 46322051 7657355 * c(LOC100132831, ATP6AP2, FUNDC1, CXorf38, DDX3X, GPR82, GPR34, LINC01281, MPC1L, LOC392452, MIR221, MIR222, MAOA, MAOB, NDP, BCOR, KRBOX4, MID1IP1, NYX, DUSP21, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, CASK, MED14) 0.371092279157371 30 0.0602189873443718 0.624924569154255 2196 0.147105644018767 1 1 0 -6.89611526420176 LTS-026 chrX 46322052 46322159 108 * KRBOX4 NA 0 NA 0.725 1 NA NA NA NA NA LTS-026 chrX 46322160 54823568 8501409 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, HUWE1, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, RIBC1, XAGE3, XAGE5, NUDT10, ELK1, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, HSD17B10, ERAS, ZNF81, ITIH6, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, NA NA NA NA NA NA NA NA NA LTS-026 MIRLET7F2, MIR188, MIR98, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, GPR173, NDUFB11, GNL3L, FAM120C, NUDT11, OTUD5, KRBOX4, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, RP2, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, SMC1A, UXT, SLC9A7, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.294158158117111 43 0.0695826269352278 0.841273277195082 8320 0.187327850690808 2 2 0 -6.83817555394579 LTS-026 NA NA NA NA LTS-026 chrX 54823569 54824442 874 * ITIH6 NA 0 NA 1.036 1 NA NA NA NA NA LTS-026 chrX 54824443 56590090 1765648 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, USP51, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, PFKFB1, SNORA11, TRO, FAM104B, PAGE5) 0.257167929240953 17 0.0733390594912344 1.04755351235637 889 0.26363745816554 3 3 0 -6.89825495861334 LTS-026 chrX 56590091 57515336 925246 * c(FAAH2, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420) NA 0 NA 1.11772996305664 225 0.244361891155733 4 NA NA -5.82187660869124 LTS-026 chrX 57515337 57515412 76 * FAAH2 NA 0 NA 0.948 1 NA NA NA NA NA LTS-026 chrX 57515413 57937169 421757 * c(FAAH2, ZXDB, ZXDA) NA 0 NA 0.896861254942858 217 0.185768700228642 2 NA NA -5.81015281161145 LTS-026 chrX 61999880 62856174 856295 * c(SPIN4, ARHGEF9, LINC01278) 0.353 1 NA 0.952127752816094 125 0.224373773695993 3 3 0 -5.81114011626868 LTS-026 chrX 62856175 69283576 6427402 * c(MIR1468, MIR676, VSIG4, AMER1, OTUD6A, ASB12, AWAT2, EDA, EFNB1, ARHGEF9, FAM155B, YIPF6, ZC3H12B, AR, MIR223, MSN, OPHN1, MTMR8, ZC4H2, EDA2R, PJA1, LAS1L, FRMD8P1, STARD8, HEPH) 0.301475436840141 8 0.145004187131663 0.93389940259473 2263 0.20242566485929 3 3 0 -7.56122354878375 LTS-026 chrX 69283577 69283783 207 * OTUD6A NA 0 NA 0.693 1 NA NA NA NA NA LTS-026 chrX 69283784 69825369 541586 * c(OTUD6A, AWAT1, DLG3, KIF4A, DGAT2L6, RAB41, IGBP1, ARR3, P2RY4, PDZD11, GDPD2, TEX11) 0.433115177023266 7 0.022078862979696 0.731120654684115 810 0.15655458676722 2 1 1 -6.94072179860007 LTS-026 chrX 69825370 69826763 1394 * TEX11 NA 0 NA 0.665 1 NA NA NA NA NA LTS-026 chrX 69826764 80533788 10707025 * c(MIR374B, FTX, MIR4328, MIR374C, CDX4, CYSLTR1, COX7B, MAP2K4P1, UPRT, MAGEE2, CXorf65, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, ITGB1BP2, GJB1, INGX, P2RY10, CXCR3, LPAR4, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, IL2RG, ZCCHC13, FLJ44635, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, CITED1, NAP1L2, NONO, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, ATRX, ERCC6L, NA NA NA NA NA NA NA NA NA LTS-026 JPX, HDAC8, TEX11, MAGEE1, BCYRN1, RPS4X, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, HMGN5, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, MED12) 0.348066973732873 42 0.077813395417421 0.644895012174185 5759 0.160373967770708 1 1 0 -6.7625056934283 LTS-026 NA NA NA NA LTS-026 chrX 80533789 80533887 99 * SH3BGRL NA 0 NA 0.607 1 NA NA NA NA NA LTS-026 chrX 80533888 109440037 28906150 * c(ARMCX4, UBE2DNL, LINC00630, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, TMSB15A, MID2, CHM, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, APOOL, HDX, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, TCEAL6, H2BFWT, TIMM8A, DIAPH2, DRP2, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, CENPI, IL1RAPL2, BEX3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, RAB40AL, H2BFM, LOC286437, FAM133A, TMSB15B, GUCY2F, RPA4, HNRNPH2, NA NA NA NA NA NA NA NA NA LTS-026 BEX5, TCEAL5, MORF4L2-AS1, VSIG1, SATL1, ARL13A, SLC25A53, XKRX, GLRA4, XRCC6P5, NAP1L3, TCEAL9, RAB9B, ARMCX1, ARMCX3, CPXCR1, PLP1, TAF7L, ARMCX6, POU3F4, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF5, NXF4, NXF3, KLHL4, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, ZCCHC18, SH3BGRL, ARMCX5, SERPINA7, BTK, TSPAN6, ZNF711, RNF128, MORC4, TCEAL4, TRMT2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 POF1B, ESX1, BHLHB9, TMEM164, ZMAT1, BEX2, IRS4, TCEAL3, TGIF2LX, CLDN2, TCEAL8, RIPPLY1, TCEAL1, SYTL4, MORF4L2, GPRASP1, ARMCX2, AMMECR1) 0.331119482208753 88 0.0872338166480187 0.671391101564919 8937 0.295973372773036 1 1 0 -7.23736307406875 LTS-026 NA NA NA NA LTS-026 chrX 109440038 111700105 2260068 * c(TRPC5OS, DCX, ZCCHC16, LINC00890, PAK3, RGAG1, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, CHRDL1, AMMECR1) 0.220484186952995 6 0.218879571149677 0.804855312061261 1112 0.166182113268096 2 2 0 -6.80449852094326 LTS-026 chrX 111700106 112022436 322331 * c(AMOT, ZCCHC16, LHFPL1) 0.484 1 NA 0.78288999870569 133 0.126367311988911 2 2 0 -5.80299395640165 LTS-026 chrX 112022437 117054395 5031959 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, MIR4329, SLC6A14, RBMXL3, AMOT, AGTR2, CT83, HTR2C, IL13RA2, LUZP4, PLS3, MIR448, LRCH2, SNORA35, KLHL13) 0.402628353639347 3 0.0548361194834208 0.791905936353705 896 0.178701745418428 2 1 1 -7.07313045019321 LTS-026 chrX 117054396 117079356 24961 * KLHL13 NA 0 NA 0.644 1 NA NA NA NA NA LTS-026 chrX 117079357 129063835 11984479 * c(ZBTB33, TEX13C, PRR32, MIR1277, SLC25A5-AS1, TENM1, STAG2, UTP14A, PGRMC1, DCAF12L1, ACTRT1, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, DCAF12L2, SOWAHD, IL13RA1, LAMP2, SH2D1A, NDUFA1, OCRL, ZDHHC9, SASH3, WDR44, TMEM255A, NKRF, THOC2, KIAA1210, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, SMARCA1, CT47A10, CT47A9, CT47A6, NA NA NA NA NA NA NA NA NA LTS-026 CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, XPNPEP2, MIR766, RNF113A, NKAP, LONRF3, CUL4B, APLN, KLHL13) 0.395033588218681 83 0.0989233296764501 0.692734971168132 4579 0.196563192060516 1 1 0 -7.91037955726611 LTS-026 NA NA NA NA LTS-026 chrX 129063836 129139089 75254 * character(0) NA 0 NA 0.724 1 NA NA NA NA NA LTS-026 chrX 129139090 132838398 3699309 * c(HS6ST2-AS1, ENOX2, GPR119, ARHGAP36, ELF4, GPC4, GPC3, FIRRE, OR13H1, IGSF1, TFDP3, RBMX2, STK26, ZNF280C, MBNL3, RAP2C, BCORL1, USP26, SLC25A14, HS6ST2, FRMD7, AIFM1, RAB33A) 0.407589119148073 8 0.0548450740072173 0.764658874433647 1938 0.177619038882109 2 1 1 -7.25895829279837 LTS-026 chrX 132838399 132887479 49081 * GPC3 NA 0 NA 0.83 1 NA NA NA NA NA LTS-026 chrX 132887480 135593629 2706150 * c(MIR450B, LINC00633, LINC00629, SLC9A6, PLAC1, ADGRG4, FAM122B, FAM122C, INTS6L, ZNF449, FHL1, FAM127B, GPC3, HTATSF1, HPRT1, CCDC160, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, SMIM10, SMIM10L2B, MIR542, BRS3, CT45A2, ZNF75D, MAP7D3, PHF6, MIR503HG, FAM127A, MMGT1) 0.367960637502301 13 0.0310022745236704 0.827804067232543 1902 0.190131352470702 2 1 1 -8.52746519633278 LTS-026 chrX 135593630 135594300 671 * HTATSF1 0 1 NA 0.81081153029595 15 0.881524042834476 2 2 0 -5.76441037560266 LTS-026 chrX 135594301 140270815 4676515 * c(MIR934, LINC00892, FGF13-AS1, MIR320D2, CDR1, LINC00889, NA, F9, FGF13, LDOC1, SNORD61, RBMX, HTATSF1, ATP11C, LINC00632, CXorf66, LOC389895, MCF2, VGLL1, MIR504, MIR505, SOX3, SRD5A1P1, ZIC3, GPR101, ARHGEF6, CD40LG) 0.268443141035889 4 0.165381125484944 0.824088583471433 1160 0.175631604155684 2 2 0 -6.73567676768388 LTS-026 chrX 140270816 154509411 14238596 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, NA NA NA NA NA NA NA NA NA LTS-026 FLNA, FMR1, AFF2, LDOC1, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MPP1, SPANXN4, MTCP1, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, NA NA NA NA NA NA NA NA NA NA NA NA LTS-026 MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, SLITRK2, IKBKG, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.308475543716738 100 0.0872050735249094 0.954557325419979 8568 0.332032025928896 3 3 0 -7.61380547468753 LTS-026 NA NA NA NA LTS-026 chrX 154509412 154774986 265575 * c(CLIC2, TMLHE) NA 0 NA 0.821573399757084 89 0.205469922171744 2 NA NA -5.76467618974416 LTS-026 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.246607951788947 25 0.0973158431774258 0 NA NA -11.202723709946 LTS-026 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.381 1 NA 0.390853737972754 17 0.392944951989611 0 0 0 -6.27480366259965 LTS-026 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.29177974264213 3 0.314655896708346 4 NA NA -5.76441277844641 LTS-026 chr1 14677 762273 747597 * c(LOC100288069, WASH7P, LOC729737, OR4F5, LINC00115) 0.196 1 NA 1.1003801669737 22 0.463003333227836 4 4 0 -5.76441567204663 LTS-027 chr1 762274 1607004 844731 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-027 CDK11B) 0.368501772214883 48 0.0988276828841763 1.11612607244678 3062 0.716707363947859 3 2 1 -6.7971114806939 LTS-027 NA NA NA NA LTS-027 chr1 1607005 1662163 55159 * c(CDK11A, SLC35E2B, MMP23A, CDK11B, SLC35E2) 0.415519524804023 14 0.0427993658163963 0.642420868927739 251 0.470125983284654 2 1 1 -6.78844371894736 LTS-027 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 1.23 1 NA NA NA NA NA LTS-027 chr1 1663709 12202905 10539197 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, CLCN6, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, ARHGEF16, GNB1, NA NA NA NA NA NA NA NA NA LTS-027 LOC284661, UBIAD1, ZBTB48, C1orf174, TMEM52, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, MIR34A, LINC00982, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, CASZ1, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, SLC2A5, NADK, SRM, MIR551A, TP73, SLC35E2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, SLC35E2, MFN2) 0.372122834376543 202 0.083590088476345 1.08808142904718 11545 0.666796255026805 4 3 1 -6.95716631384003 LTS-027 NA NA NA NA LTS-027 chr1 12202906 15250706 3047801 * c(MIR4632, PDPN, LRRC38, AADACL3, KAZN, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, VPS13D, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, SNORA59B, TNFRSF1B, PRDM2, DHRS3, C1orf158, TNFRSF8) 0.33358814596709 43 0.0892060029563883 0.935381171728745 1465 0.619241664836288 4 3 1 -6.86735457315611 LTS-027 chr1 15250707 15287112 36406 * KAZN NA 0 NA 1.043 1 NA NA NA NA NA LTS-027 chr1 15287113 16975351 1688239 * c(MST1P2, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NBPF1, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, EFHD2, RSG1, AGMAT, CASP9, DDI2, CROCCP2) 0.369287909062028 122 0.0773535161089008 1.08130467231598 3046 4.03042803844493 6 4 2 -6.74062008119497 LTS-027 chr1 16975352 16978916 3565 * MST1P2 0.284038673240511 3 0.119249039129602 0.180139612249374 80 0.193041118053884 1 1 0 -6.81310165307317 LTS-027 chr1 16978917 17009683 30767 * character(0) NA 0 NA 2.102 1 NA NA NA NA NA LTS-027 chr1 17009684 17017709 8026 * character(0) 0.382969155052386 5 0.0407516870816412 1.0534040941791 70 0.349091354087959 3 2 1 -6.73796753667793 LTS-027 chr1 17017710 17022913 5204 * ESPNP NA 0 NA 3.348 1 NA NA NA NA NA LTS-027 chr1 17022914 17046605 23692 * ESPNP 0.333226144105192 18 0.0672171634244077 2.752863365393 73 1.39303097823293 16 11 5 -6.73597657974436 LTS-027 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.491 1 NA NA NA NA NA LTS-027 chr1 17081542 17198553 117012 * c(MST1L, CROCC) 0.34201632197338 24 0.112796268503908 0.958603098615517 186 0.748269532104941 4 3 1 -6.75767497714903 LTS-027 chr1 17198554 17248432 49879 * CROCC NA 0 NA 2.798 1 NA NA NA NA NA LTS-027 chr1 17248433 17279907 31475 * CROCC 0.402379184278276 12 0.0768514899995538 2.77707337283536 95 1.20263238382138 15 9 6 -6.73346832588168 LTS-027 chr1 17279908 17279911 4 * CROCC NA 0 NA 1.473 1 NA NA NA NA NA LTS-027 chr1 17279912 18024013 744102 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, CROCC) 0.374561730925895 39 0.106918985057482 1.20715215161877 1187 0.99745559426978 6 4 2 -6.75710221998052 LTS-027 chr1 18024014 19199189 1175176 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.401454672377559 6 0.0909109454356295 0.863362978520739 472 0.478122202074525 3 2 1 -6.75541162180584 LTS-027 chr1 19199190 24255756 5056567 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, IFFO2, VWA5B1, UBXN10, ZNF436-AS1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, PLA2G2D, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, NA NA NA NA NA NA NA NA NA LTS-027 MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PITHD1, KIF17, RAP1GAP, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, ALDH4A1, EIF4G3, CDA, ZBTB40, CDC42) 0.370220346922623 191 0.0836480508902983 1.06045932919795 7215 0.55946312348972 4 3 1 -6.95215213197199 LTS-027 NA NA NA NA LTS-027 chr1 24255757 24297763 42007 * PNRC2 0.359189467843973 6 0.0940021276354956 0.59881353169685 157 0.335452791690886 3 2 1 -6.81972041910594 LTS-027 chr1 24297764 24298289 526 * character(0) NA 0 NA 1.596 1 NA NA NA NA NA LTS-027 chr1 24298290 33276401 8978112 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, RCAN3AS, PTPRU, WASF2, SRRM1, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RCAN3, RAB42, FAM46B, KDF1, MYOM3, COL16A1, DCDC2B, LINC01225, PDIK1L, IFNLR1, PAQR7, FAM76A, TXLNA, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, IFI6, ZNF683, CLIC4, SYF2, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, LOC284632, HCRTR1, NA NA NA NA NA NA NA NA NA LTS-027 HDAC1, HMGN2, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, NCMAP, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, PEF1, PIGV, IQCC, TMEM234, MTFR1L, RSRP1, MAN1C1, NIPAL3, SELENON, PTAFR, ADGRB2, KIAA1522, GRHL3, IL22RA1, RBBP4, RHCE, RHD, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CEP85, MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, RUNX3, EIF3I, STPG1, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.376907531484331 175 0.0673394981651652 1.05007248055409 11260 0.575319480051051 4 2 2 -7.09827523700289 LTS-027 NA NA NA NA LTS-027 chr1 33276402 47310238 14033837 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR4255, MIR3659, MIR3605, TMEM35B, SLFNL1-AS1, MKNK1-AS1, GJA9-MYCBP, MIR5581, MIR5584, TSPAN1, ZMPSTE24, AKR1A1, TESK2, PPIE, PPIH, CAP1, LRRC41, SF3A3, EBNA1BP2, KIF2C, MED8, SMIM12, AZIN2, TMEM54, TOE1, ERMAP, CSMD2, PLK3, CCDC163, DMBX1, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, KLF17, TMEM125, COL8A2, COL9A2, CSF3R, KNCN, NA NA NA NA NA NA NA NA NA LTS-027 MOB3C, ZNF362, MANEAL, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, PHC2, AGO3, AGO4, SLFNL1, AK2, FAAH, FHL3, FOXJ3, SCMH1, MAST2, NCDN, SZT2, MACF1, FNDC5, MMACHC, MYCBP, HEYL, AGO1, BEST4, SNORD55, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HPCA, LINC01343, TFAP2E, C1orf228, ZFP69, TCTEX1D4, BMP8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 INPP5B, IPP, SVBP, TEX38, NSUN4, LINC01144, CSMD2-AS1, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, YBX1, PRDX1, ZNF691, UTP11, TMEM69, HPCAL4, ATP6V0B, LURAP1, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, RNF220, EVA1B, TRIM62, PPT1, POMGNT1, MAP7D1, DMAP1, PSMB2, ZSWIM5, PTPRF, DLGAP3, HIVEP3, RLF, GPBP1L1, RPS8, CLSPN, OXCT2, RRAGC, P3H1, SFPQ, KIAA0754, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SMAP2, ATPAF1, S100PBP, MEAF6, EXO5, ELOVL1, ST3GAL3, MRPS15, SLC2A1, ZFP69B, LOC653160, SLC6A9, BMP8B, SNORA55, TIE1, LINC01137, PPIEL, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ZSCAN20, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, HYI, STK40, ZMYND12, RAD54L, NT5C1A, HPDL, MFSD2A, LSM10, C1orf94, PIK3R3, YARS, MKNK1, PTCH2, B4GALT2, PABPC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 EIF2B3, ARTN, KCNQ4, ZMYM4, ZMYM6, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20, THRAP3) 0.379696349678005 272 0.0775361329325673 0.984130244143399 17452 0.527697830440645 3 2 1 -6.96185208716294 LTS-027 NA NA NA NA LTS-027 chr1 47310239 47310250 12 * CYP4Z2P NA 0 NA 0.592 1 NA NA NA NA NA LTS-027 chr1 47310251 47614724 304474 * c(CYP4A11, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0.376417129957099 16 0.077139267994107 0.628228677357982 333 0.444272062387936 3 2 1 -6.86113189769835 LTS-027 chr1 47614725 47615016 292 * character(0) NA 0 NA 1.342 1 NA NA NA NA NA LTS-027 chr1 47615017 62914282 15299266 * c(LINC01135, MIR761, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4711, LINC00853, PDZK1IP1, PATJ, CDKN2C, FAF1, KTI12, MYSM1, OSBPL9, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, ELAVL4, C1orf168, TMEM61, CDCP2, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, RNF11, C1orf185, GPX7, FAM151A, NA NA NA NA NA NA NA NA NA LTS-027 FAM159A, JUN, MROH7, TRABD2B, LDLRAD1, SKINT1L, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, NRDC, ORC1, TXNDC12, MRPL37, HOOK1, HSPB11, CMPK1, YIPF1, SPATA6, L1TD1, C1orf123, TTC22, ECHDC2, FGGY, PRKAA2, NDC1, RAB3B, CYB5RL, SCP2, DMRTB1, DMRTA2, STIL, SLC1A7, COA7, TAL1, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, BEND5, ZYG11B, TM2D1, FOXD2-AS1, AGBL4, PRPF38A, PLPP3, BTF3L4, ZFYVE9, TMEM59) 0.387207719902036 167 0.0932741006935111 0.990421025305129 9301 0.565456136424653 3 2 1 -6.97746242989619 LTS-027 NA NA NA NA LTS-027 chr1 62914283 62915840 1558 * USP1 NA 0 NA 0.466 1 NA NA NA NA NA LTS-027 chr1 62915841 68894730 5978890 * c(INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, MIR4794, UBE2U, IL23R, GADD45A, LINC00466, TCTEX1D1, AK4, SLC35D1, ITGB3BP, SERBP1, FOXD3, ANGPTL3, ALG6, IL12RB2, JAK1, LEPR, C1orf141, MIR101-1, ROR1, PDE4B, PGM1, LEPROT, RAVER2, GNG12, CACHD1, MIER1, RPE65, USP1, DLEU2L, WDR78, WLS, SGIP1, EFCAB7, ATG4C, DOCK7, DIRAS3, DNAJC6) 0.364117125913663 91 0.117927717353244 0.851267733649314 3820 0.5243523095514 3 2 1 -6.79659881146731 LTS-027 chr1 68894731 70225832 1331102 * c(DEPDC1, LRRC7, RPE65) 0.24117930246763 3 0.0263122278291545 0.655219950882437 248 0.41694068701222 2 2 0 -7.11977563904525 LTS-027 chr1 70225833 70340447 114615 * LRRC7 0.464 1 NA 0.479249466423219 57 0.306912967384684 1 1 0 -5.76672931203072 LTS-027 chr1 70340448 75862381 5521934 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, SLC44A5, NEGR1, MIR186, LHX8, TNNI3K, PIN1P1, LRRC40, PTGER3, LRRC7, ANKRD13C, FPGT, SRSF11, ZRANB2) 0.422495531555854 42 0.072967245607019 0.580586831753519 2147 0.342566379210967 2 1 1 -7.63900877801273 LTS-027 chr1 75862382 75868027 5646 * SLC44A5 NA 0 NA 1.678 1 NA NA NA NA NA LTS-027 chr1 75868028 92697072 16829045 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, GBP6, HFM1, SLC44A5, CLCA4, USP33, ADGRL2, KIAA1107, LRRC8B, LPAR3, DDAH1, EPHX4, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GBP1, GBP2, GBP3, SNORD45B, SNORD45A, GNG5, ZNF326, BTBD8, GTF2B, LINC01140, ACADM, BARHL2, CYR61, MIGA1, GBP7, C1orf146, UOX, GBP1P1, FLJ27354, NA NA NA NA NA NA NA NA NA LTS-027 LINC01555, MSH4, GEMIN8P4, RBMXL1, SH3GLB1, ZNHIT6, GIPC2, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, RABGGTB, ADGRL4, LOC646626, BRDT, SNORD45C, TGFBR3, LOC729930, TTLL7, RPF1, ST6GALNAC5, CDC7, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.419021442879078 122 0.0697366249311972 0.699467481642778 7515 0.435103960246781 2 1 1 -6.74639409068422 LTS-027 NA NA NA NA LTS-027 chr1 92697073 92706355 9283 * C1orf146 NA 0 NA 0.993 1 NA NA NA NA NA LTS-027 chr1 92706356 95448399 2742044 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, CNN3, SLC44A3, DR1, ALG14, F3, MTF2, ABCA4, GFI1, SNORA66, GCLM, DNTTIP2, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, ABCD3, SNORD21, RPL5, LOC729970, EVI5, RPAP2, BCAR3, ARHGAP29) 0.424322808455325 49 0.0630693994712163 0.792512922452906 2322 0.471146897321574 2 1 1 -6.83723073080828 LTS-027 chr1 95448400 109154920 13706521 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, NA NA NA NA NA NA NA NA NA LTS-027 PLPPR4) 0.420180400235418 71 0.0641320004435018 0.604115538481083 3522 0.366563710113578 2 1 1 -7.91838198352048 LTS-027 NA NA NA NA LTS-027 chr1 109154921 109158865 3945 * FAM102B NA 0 NA 1.783 1 NA NA NA NA NA LTS-027 chr1 109158866 109742877 584012 * c(HENMT1, C1orf194, FNDC7, WDR47, CLCC1, AKNAD1, FAM102B, GPSM2, PRPF38B, TMEM167B, KIAA1324, SPATA42, SCARNA2, STXBP3, TAF13) 0.407576808516844 28 0.0931895931129129 0.771725630530471 1125 0.659856555025382 2 1 1 -6.76967494022885 LTS-027 chr1 109742878 109743299 422 * KIAA1324 NA 0 NA 1.632 1 NA NA NA NA NA LTS-027 chr1 109743300 110527839 784540 * c(AHCYL1, ATXN7L2, CSF1, CELSR2, AMPD2, GNAI3, GNAT2, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, MYBPHL, MIR197, PSMA5, AMIGO1, KIAA1324, SORT1, SARS, EPS8L3, GPR61, PSRC1) 0.302217738614093 43 0.0561118365942523 1.11402683775226 2048 0.569455655105699 4 3 1 -6.7944582427729 LTS-027 chr1 110527840 110551615 23776 * AHCYL1 NA 0 NA 0.322 1 NA NA NA NA NA LTS-027 chr1 110551616 112315307 1763692 * c(LINC01160, FAM212B-AS1, LAMTOR5-AS1, CEPT1, LAMTOR5, AHCYL1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CHIAP2, UBL4B, ALX3, CHIA, KCNA2, KCNA3, KCNA10, KCNC4, SLC6A17, LOC440600, PGCP1, OVGP1, ATP5F1, LRIF1, FAM212B, RAP1A, CYMP, RBM15, WDR77, DENND2D, PROK1, STRIP1, SLC16A4, CD53) 0.412522870495888 46 0.067980702007339 0.637049938226733 2219 0.36356137926479 2 1 1 -6.84512752609094 LTS-027 chr1 112315308 115110664 2795357 * c(AP4B1-AS1, MIR4256, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, TRIM33, RSBN1, ST7L, CTTNBP2NL, OLFML3, LOC643355, LOC643441, DCLRE1B, SLC16A1, WNT2B, CAPZA1, LRIG2) 0.42334072191551 51 0.0953944792253025 0.741417639987642 2443 0.41460355659432 2 1 1 -6.76047384656881 LTS-027 chr1 115110665 115110683 19 * c(BCAS2, DENND2C) 0.465 1 NA 1.675 1 NA NA NA NA NA LTS-027 chr1 115110684 115127746 17063 * c(BCAS2, DENND2C) NA 0 NA 1.59972632408227 68 1.06678976554101 7 NA NA -5.76443732532267 LTS-027 chr1 115127747 118319310 3191564 * c(MIR942, MIR320B1, TSPAN2, MAN1A2, MAB21L3, DENND2C, AMPD1, IGSF3, ATP1A1, NGF, NHLH2, NRAS, FAM46C, SLC22A15, PTGFRN, SYCP1, TSHB, CSDE1, VTCN1, SIKE1, TRIM45, VANGL1, CASQ2, TTF2, ATP1A1-AS1, CD2, CD101, CD58) 0.384277156890129 88 0.0747254807012956 0.710013538401844 2829 0.437332283751028 2 1 1 -6.93623408221757 LTS-027 chr1 118319311 118319409 99 * character(0) NA 0 NA 0.582 1 NA NA NA NA NA LTS-027 chr1 118319410 118412157 92748 * GDAP2 0.453 1 NA 0.295704205570896 39 0.170024972366033 0 0 0 -5.76861582141987 LTS-027 chr1 118412158 119474486 1062329 * c(WDR3, SPAG17, GDAP2, TBX15) 0.434686221594227 2 0.0516187950266179 0.606475430739115 577 0.242609808223146 2 1 1 -6.97438338694336 LTS-027 chr1 119474487 119530254 55768 * TBX15 NA 0 NA 1.26 1 NA NA NA NA NA LTS-027 chr1 119530255 120535521 1005267 * c(WARS2, ADAM30, HSD3BP4, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, LINC00622, TBX15, REG4, ZNF697) 0.388464297728851 36 0.11544653129177 0.862696804194508 997 0.407769590032687 3 2 1 -6.74022401057873 LTS-027 chr1 120535522 120538801 3280 * NOTCH2 0.281278170592032 2 0.0049497474683058 0.455745212573504 110 1.13898617785487 19 14 5 -6.7402849482576 LTS-027 chr1 120538802 121116733 577932 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.316599671002992 15 0.100037849979752 0.896107288400471 120 0.602059664573107 4 3 1 -6.77325981416688 LTS-027 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.535113480354769 63 0.24816008761173 1 NA NA -5.76997258492713 LTS-027 chr1 143912360 144013853 101494 * FAM72D 0.23 1 NA 0.922242531906898 5 0.713182094559307 3 3 0 -5.76447264400255 LTS-027 chr1 144013854 145075923 1062070 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.406180997312194 58 0.0755520117076921 0.839219323601075 560 0.53482687080994 3 2 1 -6.78570107672701 LTS-027 chr1 145075924 145103928 28005 * c(NBPF20, SEC22B, PDE4DIP) 0.134 1 NA 1.14726097057971 15 0.328199895534065 4 4 0 -5.76470323687472 LTS-027 chr1 145103929 145282020 178092 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B) 0.262846525961995 15 0.0710390905132687 0.888792235981366 148 0.593261083024159 5 4 1 -6.78532159080365 LTS-027 chr1 145282021 145285310 3290 * c(NBPF10, NBPF20, NOTCH2NL) 0.315946661709556 14 0.0819294791905793 0.542856217515973 126 1.20634016000911 4 3 1 -6.73533705779789 LTS-027 chr1 145285311 145290585 5275 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 0.416985320432153 29 0.258124955420505 1 NA NA -5.76622559158943 LTS-027 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 1.325 1 NA NA NA NA NA LTS-027 chr1 145414668 145438581 23914 * c(NBPF10, NBPF20, TXNIP, HFE2) 0.448 1 NA 0.965021474360942 49 0.719705517773016 3 3 0 -5.76453893929322 LTS-027 chr1 145438582 145706867 268286 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, ANKRD35, NUDT17, RNF115, ANKRD34A, POLR3GL, ITGA10, PEX11B, RBM8A) 0.447142300575483 14 0.0531436473414015 1.16848085112948 1127 0.659731604550581 4 2 2 -6.80787426008543 LTS-027 chr1 145706868 145746977 40110 * c(NBPF10, NBPF20, CD160, PDZK1) NA 0 NA 0.696 1 NA NA NA NA NA LTS-027 chr1 145746978 146509944 762967 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) NA 0 NA 0.633632792662771 125 0.396360774563911 2 NA NA -5.79674694438276 LTS-027 chr1 146509945 146509952 8 * c(NA, NA, NA, LOC728989) NA 0 NA 0.914 1 NA NA NA NA NA LTS-027 chr1 146509953 147806796 1296844 * c(LINC00624, MIR5087, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.44056845312556 4 0.0155884572681199 1.04376224117766 715 0.549719143627882 4 2 2 -7.08286103051035 LTS-027 chr1 147806797 148193315 386519 * c(NBPF14, LINC01138) NA 0 NA 0.408 1 NA NA NA NA NA LTS-027 chr1 148193316 148195957 2642 * NBPF14 NA 0 NA 0.456910564135194 55 0.366157771738787 1 NA NA -5.76453822929913 LTS-027 chr1 148902222 152009528 3107307 * c(LOC100132111, FCGR1CP, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LOC388692, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, NA NA NA NA NA NA NA NA NA LTS-027 PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, LOC645166, MRPL9, HIST2H3D, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.441086420867209 69 0.0489830729152946 1.2510849752166 5491 0.757541922042475 4 2 2 -6.82718099741076 LTS-027 NA NA NA NA LTS-027 chr1 152009529 152056513 46985 * character(0) NA 0 NA 0.761 1 NA NA NA NA NA LTS-027 chr1 152056514 152323132 266619 * c(TCHHL1, RPTN, FLG, HRNR, FLG2, TCHH) 0.414724435897825 44 0.0893998902714633 0.883246443333231 562 0.474000509158134 4 2 2 -6.78081283277804 LTS-027 chr1 152323133 152323220 88 * FLG2 NA 0 NA 0.473 1 NA NA NA NA NA LTS-027 chr1 152323221 152328775 5555 * FLG2 0.454 1 NA 0.389831700073404 94 0.141380703482896 0 0 0 -5.7731856952842 LTS-027 chr1 152328776 152328874 99 * FLG2 NA 0 NA 0.603 1 NA NA NA NA NA LTS-027 chr1 152328875 153507281 1178407 * c(C1orf68, PGLYRP3, LELP1, SPRR4, LCE4A, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.421269451309972 39 0.0648427975496283 0.906726479492501 1011 0.526963915848811 4 2 2 -6.83271812755194 LTS-027 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.207 1 NA NA NA NA NA LTS-027 chr1 153507608 155447748 1940141 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, IL6R, ILF2, KCNN3, C1orf189, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, UBE2Q1, ASH1L, LENEP, SLC50A1, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, RAB13, NA NA NA NA NA NA NA NA NA LTS-027 RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, POU5F1P4, SHC1, INTS3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, DENND4B) 0.453785778410007 73 0.033977721235169 1.28449831068389 5651 0.687932393159467 6 3 3 -7.10482253764481 LTS-027 NA NA NA NA LTS-027 chr1 155447749 155642562 194814 * c(MSTO1, YY1AP1, ASH1L, ASH1L-AS1) 0.479 1 NA 0.825321232435293 296 0.507100566099861 3 3 0 -5.76794296345845 LTS-027 chr1 155642563 155644702 2140 * YY1AP1 NA 0 NA 2.386 1 NA NA NA NA NA LTS-027 chr1 155644703 155715948 71246 * c(MSTO2P, YY1AP1, DAP3) 0.428380883757011 3 0.0875918565469036 1.25934609127081 124 0.85912318282066 4 2 2 -6.73410986533245 LTS-027 chr1 155715949 155716482 534 * c(MSTO2P, YY1AP1) NA 0 NA 0.072 1 NA NA NA NA NA LTS-027 chr1 155716483 155723146 6664 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.623863275509068 87 0.399626933417728 2 NA NA -5.76477763259324 LTS-027 chr1 155723147 155724062 916 * c(GON4L, YY1AP1) NA 0 NA 1.588 1 NA NA NA NA NA LTS-027 chr1 155724063 157094501 1370439 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, KIAA0907, SYT11, SMG5, LAMTOR2, HDGF, RXFP4, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GON4L, GPATCH4, YY1AP1, PRCC, UBQLN4, RAB25, RHBG, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, SSR2, SCARNA4, SNORA80E, CCT3, MIR765, MRPL24, PAQR6, ISG20L2, TMEM79, SH2D2A, ARHGEF2, MEX3A, SLC25A44, ARHGEF11 NA NA NA NA NA NA NA NA NA LTS-027 ) 0.441888711008678 63 0.10142259489254 1.26687393991991 3928 0.723442218973518 4 2 2 -6.77531306172863 LTS-027 NA NA NA NA LTS-027 chr1 157094502 157094544 43 * ETV3 NA 0 NA 1.021 1 NA NA NA NA NA LTS-027 chr1 157094545 158326033 1231489 * c(FCRL1, FCRL3, ETV3, CYCSP52, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.427679119066085 33 0.0871093008985281 1.06137172065756 1206 0.593224463224172 4 2 2 -6.73556820562354 LTS-027 chr1 158326034 158326277 244 * CD1E NA 0 NA 0.756 1 NA NA NA NA NA LTS-027 chr1 158326278 159806820 1480543 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, CD1E, AIM2) 0.439136716999265 52 0.0737633082299434 0.819667628838634 1506 0.48868063412975 2 1 1 -6.83014680110084 LTS-027 chr1 159806821 160459909 653089 * c(LINC01133, SLAMF6, COPA, NCSTN, CFAP45, C1orf204, KCNJ9, KCNJ10, VSIG8, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, SLAMF8, VANGL2, IGSF9, PEX19, TAGLN2, CASQ1, PEA15, SLAMF9, PIGM, IGSF8) 0.430116918273898 43 0.1023670463656 1.23060848748338 1940 1.29080999920575 4 2 2 -6.73621862261897 LTS-027 chr1 160459910 160513062 53153 * c(SLAMF6, CD84) 0 1 NA 1.15289350665698 79 0.869708618714944 4 4 0 -5.76450827271676 LTS-027 chr1 160513063 160516584 3522 * CD84 NA 0 NA 1.68169970283921 59 0.629276572947128 7 NA NA -5.76441026839239 LTS-027 chr1 160516585 160516588 4 * CD84 NA 0 NA 0.869 1 NA NA NA NA NA LTS-027 chr1 160516589 160802412 285824 * c(LY9, CD244, SLAMF7, SLAMF1, CD84, CD48) 0.25543872137149 9 0.236987400040124 0.9413309745101 435 0.87816353132147 5 4 1 -6.75850211157449 LTS-027 chr1 160802413 160850936 48524 * c(CD244, ITLN1) 0.438 1 NA 1.03590176247579 65 0.376436427108013 4 4 0 -5.76511934994522 LTS-027 chr1 160850937 160920427 69491 * c(ITLN2, ITLN1) 0.443302813303909 3 0.0229419557434264 1.07102973664442 42 0.729810455401269 4 2 2 -6.97502978935186 LTS-027 chr1 160920428 160920757 330 * ITLN2 NA 0 NA 1.412 1 NA NA NA NA NA LTS-027 chr1 160920758 161336367 415610 * c(TSTD1, MIR5187, KLHDC9, ITLN2, FCER1G, ARHGAP30, CFAP126, USP21, APOA2, MPZ, NDUFS2, NIT1, F11R, UFC1, PFDN2, PPOX, SDHC, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.448196339813318 18 0.0407824212419143 1.32073846545412 1405 0.707004487259536 6 3 3 -6.87817682115296 LTS-027 chr1 161336368 161337583 1216 * CFAP126 NA 0 NA 0.551 1 NA NA NA NA NA LTS-027 chr1 161337584 161647501 309918 * c(FCGR2A, FCGR2B, FCGR3A, FCGR3B, CFAP126, HSPA6, HSPA7, FCGR2C) 0.410164952508844 14 0.0765251161815087 0.685718371837439 423 0.408576969336316 2 1 1 -6.76782774467313 LTS-027 chr1 161647502 161647533 32 * FCGR2B 0.478 1 NA 1.457 1 NA NA NA NA NA LTS-027 chr1 161647534 169364048 7716515 * c(MIR921, MIR3658, LOC100505795, LOC100505918, MIR4654, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, DPT, FCGR2B, ALDH9A1, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, NME7, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, RGS4, RXRG, XCL1, RPL31P11, UAP1, XCL2, MIR556, MIR557, UCK2, LINC00626, NA NA NA NA NA NA NA NA NA LTS-027 NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, NOS1AP) 0.430251799966657 113 0.0865396394562556 1.09136786119742 4608 0.632655324625894 4 2 2 -6.73379740850804 LTS-027 NA NA NA NA LTS-027 chr1 169364049 169364147 99 * c(CCDC181, BLZF1) NA 0 NA 1.037 1 NA NA NA NA NA LTS-027 chr1 169364148 171561250 2197103 * c(MIR1295A, MIR3119-1, MIR3119-2, MIR1295B, SLC19A2, METTL11B, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, LINC01142, FMO6P, PRRX1, C1orf112, SCYL3, CCDC181, SELE, SELL, SELP, TOP1P1, MROH9, BLZF1, METTL18, GORAB) 0.415437100952822 53 0.117267829482941 0.968503130703803 1983 0.617020684532779 3 2 1 -6.78766686191944 LTS-027 chr1 171561251 172279413 718163 * c(MIR3120, DNM3OS, PRRC2C, DNM3, MYOC, METTL13, VAMP4) 0 1 NA 1.02598527586449 423 0.648937703920341 4 4 0 -5.76919008452817 LTS-027 chr1 172279414 183112435 10833022 * c(GM140, RASAL2-AS1, MIR3121, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, RC3H1, TDRD5, TOR1AIP2, DHX9, FLJ23867, DNM3, TOR1AIP1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, ABL2, CACYBP, KLHL20, GLUL, SLC9C2, LOC284648, MR1, ANKRD45, RGSL1, FASLG, LINC00272, LAMC1, C1orf220, ASTN1, SERPINC1, IER5, SUCO, PIGC, RALGPS2, DARS2, MIR488, QSOX1, KIAA1614, BRINP2, RGS16, NA NA NA NA NA NA NA NA NA LTS-027 RNASEL, GAS5, PAPPA2, SNORD74, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730102, LOC730159, CACNA1E, NPHS2, NPL, SHCBP1L, TEX35, ACBD6, ZBTB37, RGS8, SEC16B, LHX4, TNFSF18, ANGPTL1, CENPL, XPR1, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.371469797881267 194 0.085103162463629 0.91069742407486 8287 0.598574947088048 3 2 1 -6.75307344395065 LTS-027 NA NA NA NA LTS-027 chr1 183112436 185267082 2154647 * c(ARPC5, IVNS1ABP, TSEN15, FAM129A, NMNAT2, COLGALT2, RGL1, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, SWT1, RNF2, EDEM3, C1orf21, TRMT1L, SMG7) 0.442360398141318 51 0.049500429786211 1.07463591699929 2154 0.569361599393723 4 2 2 -6.78207644079598 LTS-027 chr1 185267083 185267184 102 * IVNS1ABP NA 0 NA 0.489 1 NA NA NA NA NA LTS-027 chr1 185267185 196711195 11444011 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, OCLM, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, CDC73, HMCN1, B3GALT2) 0.428147341205645 31 0.0588444824794948 0.83210773770703 2380 0.44824400267468 3 2 1 -7.23332952582786 LTS-027 chr1 196711196 196712531 1336 * c(CFHR4, CFH) NA 0 NA 0.551 1 NA NA NA NA NA LTS-027 chr1 196712532 196876231 163700 * c(CFHR4, CFHR3, CFH, CFHR1) 0.38435216490509 13 0.0851768898475553 0.474921457444596 170 0.315957488978547 2 1 1 -7.03852213920495 LTS-027 chr1 196876232 196876560 329 * CFHR4 NA 0 NA 0.807 1 NA NA NA NA NA LTS-027 chr1 196876561 200377141 3500581 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, ZNF281, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.358829018846857 22 0.110809809370894 0.719788410141341 1847 0.428178859955842 2 1 1 -6.96637311457228 LTS-027 chr1 200377142 207201053 6823912 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, ZNF281, PHLDA3, TMEM9, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, IL10, RPS10P7, KISS1, TMEM81, LAD1, NA NA NA NA NA NA NA NA NA LTS-027 NA, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PIGR, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, AVPR1B, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, NUAK2, DDX59, RASSF5, FCAMR, DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, SOX13, IKBKE, ZC3H11A, TMCC2, KIF14) 0.400122022909898 202 0.067927565864135 1.08317904745422 10679 0.587456668895141 4 2 2 -6.83786956091354 LTS-027 NA NA NA NA LTS-027 chr1 207201054 207217175 16122 * c(PFKFB2, C1orf116) NA 0 NA 0.335 1 NA NA NA NA NA LTS-027 chr1 207217176 207930544 713369 * c(CR1, CR1L, CR2, CD55, CD46, PFKFB2, YOD1, C4BPA, C4BPB) 0.38155747307412 15 0.126057167681213 0.808428054205795 924 0.395735857935986 3 2 1 -6.76609372011397 LTS-027 chr1 207930545 207930788 244 * CD46 NA 0 NA 1.52 1 NA NA NA NA NA LTS-027 chr1 207930789 210004229 2073441 * c(MIR4260, C1orf74, LOC148696, DIEXF, HSD11B1, IRF6, LAMB3, MIR205, MIR29C, CD46, G0S2, PLXNA2, CAMK1G, MIR205HG, TRAF3IP3, CD34) 0.410816932356324 35 0.0512475783399985 1.11153181300467 1043 0.530721416664032 4 2 2 -6.8037263688156 LTS-027 chr1 210004230 210337648 333419 * c(SYT14, DIEXF) 0.432 1 NA 0.686636356870618 234 0.484722382375207 2 2 0 -5.76495480681116 LTS-027 chr1 210337649 210404967 67319 * SERTAD4-AS1 NA 0 NA 1.115 1 NA NA NA NA NA LTS-027 chr1 210404968 214575122 4170155 * c(MIR3122, LINC00538, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, RD3, KCNH1, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, LINC00467, ANGEL2, LPGAT1) 0.385782300872118 37 0.0556094543347749 0.946348798562469 2575 0.624285546847571 3 2 1 -6.74823788247346 LTS-027 chr1 214575123 214588104 12982 * PTPN14 NA 0 NA 1.2237557655722 17 0.510047481930388 5 NA NA -5.76450803433331 LTS-027 chr1 214588105 214625135 37031 * PTPN14 NA 0 NA 3.846 1 NA NA NA NA NA LTS-027 chr1 214625136 214787130 161995 * c(CENPF, PTPN14) 0.184 1 NA 2.58374017650704 21 1.70262959789234 12 12 0 -5.76445145591701 LTS-027 chr1 214787131 214837944 50814 * CENPF 0.182469356139364 3 0.0601775151807827 1.88370079670064 263 0.849556685425282 8 7 1 -6.73592521563198 LTS-027 chr1 214837945 215179133 341189 * KCNK2 NA 0 NA 0.547 1 NA NA NA NA NA LTS-027 chr1 215179134 219386110 4206977 * c(LINC00210, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.326932499931 23 0.0925010629145212 1.09089606488699 1523 0.679641705162673 4 3 1 -6.73645559601346 LTS-027 chr1 219386111 220089103 702993 * c(LYPLAL1, RNU5F-1, SLC30A10) NA 0 NA 0.558471387479249 76 0.355903774448469 1 NA NA -5.7953296076054 LTS-027 chr1 220089104 225978121 5889018 * c(MIR320B2, MIR4742, BPNT1, DUSP10, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, ENAH, MARC1, AIDA, SRP9, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.330075374963784 65 0.0896348280739477 1.16114407042477 4158 0.660150238988167 4 3 1 -6.7650323973213 LTS-027 chr1 225978122 230975279 4997158 * c(NA, MIR3620, MIR4666A, MIR5008, LEFTY1, SPHAR, CAPN9, SNAP47, CCSAP, MRPL55, HIST3H2BB, PARP1, RNF187, SDE2, AGT, IBA57, EPHX1, COG2, ABCB10, GALNT2, TAF5L, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, ZNF847P, H3F3AP4, TRIM17, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, ACTA1, RHOU, RAB4A, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, PGBD5, TRIM11, HIST3H3, MIXL1, OBSCN, CDC42BPA, NA NA NA NA NA NA NA NA NA LTS-027 C1orf198, WNT3A, HIST3H2A, TMEM63A, URB2) 0.344364999963877 146 0.0571902294359633 1.30721581079652 5205 0.661563646253346 6 4 2 -6.93595753347546 LTS-027 NA NA NA NA LTS-027 chr1 230975280 237538031 6562752 * c(LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, C1orf131, EDARADD, SLC35F3, B3GALNT2, EXOC8, LOC149373, RBM34, DISC2, DISC1, GNG4, IRF2BP2, FAM89A, KCNK1, COA6, LGALS8, TRIM67, MTR, NID1, ARID4B, EGLN1, MAP10, HEATR1, ERO1B, SIPA1L2, RYR2, SNRPD2P2, MT1HL1, ARV1, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, TTC13, PCNX2, SPRTN, NTPCR, NA NA NA NA NA NA NA NA NA LTS-027 GNPAT, MLK4, C1orf198, ACTN2, GGPS1, TOMM20) 0.33896271165437 132 0.0646974363458097 1.15346240248858 5083 0.626878697740248 4 3 1 -6.80666410455397 LTS-027 NA NA NA NA LTS-027 chr1 237538032 243287822 5749791 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, PLD5, FH, OPN3, LINC01139, MAP1LC3C, FMN2, ZP4, RGS7, RYR2, GREM2, RPS7P5, LINC01347, KMO, EXO1, CEP170) 0.335411478686883 34 0.0952849745839378 0.999419533591508 1878 0.54628124389601 4 3 1 -6.8499696515238 LTS-027 chr1 243287823 243287827 5 * CEP170 NA 0 NA 0.597 1 NA NA NA NA NA LTS-027 chr1 243287828 243419568 131741 * c(SDCCAG8, CEP170) 0.284 1 NA 0.656672669879628 214 0.378343688320601 2 2 0 -5.76710795599002 LTS-027 chr1 243419569 243433381 13813 * SDCCAG8 NA 0 NA 1.671 1 NA NA NA NA NA LTS-027 chr1 243433382 246943900 3510519 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, NA, HNRNPU, LOC339529, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, EFCAB2) 0.331274379262392 14 0.107706867147686 1.21546142036363 1714 0.654431792074104 4 3 1 -6.78918777119828 LTS-027 chr1 246943901 247003923 60023 * c(LINC01341, AHCTF1) NA 0 NA 0.459705104260436 40 0.24988201831449 1 NA NA -5.76994521721949 LTS-027 chr1 247003924 247740674 736751 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, AHCTF1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2C3, ZNF496, ZNF670) 0.357761211556327 21 0.0665867139614989 1.25725966925924 984 0.846040245065041 6 4 2 -6.76029738335005 LTS-027 chr1 247740675 248605384 864710 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3, OR2G2) 0.313573490673322 59 0.0906249101654163 0.754576030226491 753 0.573447652522954 4 3 1 -6.95099788167208 LTS-027 chr1 248605385 248616012 10628 * character(0) NA 0 NA 0.046 1 NA NA NA NA NA LTS-027 chr1 248616013 248845687 229675 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35) 0.329783774453854 19 0.106521776594689 0.559522712208004 287 0.690327182266891 1 1 0 -6.76704269355148 LTS-027 chr1 248845688 248902944 57257 * LYPD8 NA 0 NA 0.987 1 NA NA NA NA NA LTS-027 chr1 248902945 249120684 217740 * c(MIR3124, LYPD8, SH3BP5L) 0.271129481994845 3 0.0789071183945614 1.61249276042712 97 1.00762122809324 5 4 1 -6.73921567374026 LTS-027 chr1 249120685 249214134 93450 * c(PGBD2, ZNF692, ZNF672) NA 0 NA 1.04421360447724 217 0.556926651838684 4 NA NA -5.76487595976701 LTS-027 chr2 38824 668753 629930 * c(TMEM18, SH3YL1, FAM150B, ACP1, FAM110C) 0 1 NA 0.855885482159305 310 0.421025710830703 3 3 0 -5.77013068955781 LTS-027 chr2 668754 20884381 20215628 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, E2F6, CYS1, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, NA NA NA NA NA NA NA NA NA LTS-027 RNF144A-AS1, RHOB, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, TRAPPC12, NBAS, CPSF3, SNTG2, ADI1, ALLC, KIDINS220, WDR35, RDH14, RPS7, RRM2, SDC1, HS1BP3, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, MYT1L-AS1, VSNL1, PXDN, COLEC11, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, RNF144A) 0.418648772084209 198 0.0714063819190011 1.02655999695158 7579 0.565384776322587 4 2 2 -6.91389795659626 LTS-027 NA NA NA NA LTS-027 chr2 20884382 20884397 16 * character(0) NA 0 NA 0.792 1 NA NA NA NA NA LTS-027 chr2 20884398 21366191 481794 * c(APOB, LDAH) 0.408972024847844 5 0.0547978101752251 0.66863239534645 592 0.337603989012634 2 1 1 -6.81459977966574 LTS-027 chr2 23729986 27746618 4016633 * c(OST4, MIR1301, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, KRTCAP3, FKBP1B, MAPRE3, EFR3B, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, PFN4, FAM228B, KCNK3, KHK, KIF3C, MFSD2B, PTRHD1, MPV17, ITSN2, DNAJC27, ATRAID, SF3B6, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, NA NA NA NA NA NA NA NA NA LTS-027 AGBL5, FNDC4, FAM228A, DNAJC27-AS1, UCN, SLC30A3, CAD, CENPO, WDCP, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, DRC1, OTOF, TP53I3, SNX17) 0.419500739266498 106 0.0781004099486165 1.12961089817515 6539 0.601972200264216 4 2 2 -6.74602381779227 LTS-027 NA NA NA NA LTS-027 chr2 27746619 27760175 13557 * character(0) NA 0 NA 0.722 1 NA NA NA NA NA LTS-027 chr2 27760176 27824274 64099 * c(C2orf16, ZNF512) 0.391259336589412 5 0.111306783261399 0.688698749085402 198 0.2335460540123 3 2 1 -6.78487641834267 LTS-027 chr2 27824275 27825300 1026 * ZNF512 NA 0 NA 1.346 1 NA NA NA NA NA LTS-027 chr2 27825301 46985923 19160623 * c(SLC8A1-AS1, LINC01126, ARHGEF33, LOC100271832, LOC100288911, BRE-AS1, MIR4263, LOC100505716, CEBPZOS, MIR4765, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, GPN1, PLEKHH2, GALM, TMEM178A, PLB1, MYADML, RMDN2, CYP1B1, OXER1, FAM179A, KCNG3, EPAS1, SLC4A1AP, WDR43, RHOQ, HAAO, FOSL2, PRKD3, ALK, SPDYA, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, SNORD53, EML4, LINC00486, CYP1B1-AS1, EHD3, CDKL4, LOC375196, NA NA NA NA NA NA NA NA NA LTS-027 C2orf71, LOC388942, TMEM247, SULT6B1, C2orf91, LINC01121, LTBP1, CAPN14, MEMO1, CRIM1, DYNC2LI1, YPEL5, VIT, PIGF, HEATR5B, PPM1B, PPP1CB, TRMT61B, SRBD1, NDUFAF7, TTC27, SLC30A6, PRKCE, EIF2AK2, BIRC6, MTA3, NLRC4, THADA, RBKS, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, SPAST, SRD5A2, ZFP36L2, STRN, SNORD92, MIR558, LOC728730, C1GALT1C1L, MORN2, XDH, GALNT14, CCDC121, CLIP4, CAMKMT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 GEMIN6, THUMPD2, LBH, YIPF4, ZNF512, DPY30, MAP4K3, ATP6V1E2, DHX57, PKDCC, COX7A2L, CAPN13, HNRNPLL, CRIPT, MRPL33, BRE, PREPL, FEZ2, SOCS5, SUPT7L) 0.413644239685302 181 0.0780592918150942 1.00897391283426 11483 0.632351881690327 4 2 2 -6.9557763802911 LTS-027 NA NA NA NA LTS-027 chr2 46985924 46990118 4195 * SOCS5 NA 0 NA 0.57694249043265 74 0.164174790141124 1 NA NA -5.76596692850013 LTS-027 chr2 46990119 47888324 898206 * c(LINC01119, C2orf61, LINC01118, EPCAM, MSH2, KCNK12, TTC7A, MIR559, CALM2, MCFD2) 0.426346074431571 11 0.0341714926377369 1.22988146887824 670 0.620576632500498 4 2 2 -6.75305289246144 LTS-027 chr2 47888325 47905329 17005 * MSH2 NA 0 NA 0.88 1 NA NA NA NA NA LTS-027 chr2 47905330 54873204 6967875 * c(MIR3682, GPR75, GTF2A1L, STON1, PPP1R21, C2orf73, PSME4, FSHR, ERLEC1, STON1-GTF2A1L, MSH6, FOXN2, TSPYL6, LHCGR, MSH2, CHAC2, ASB3, RPL23AP32, SPTBN1, FBXO11, NRXN1, ACYP2) 0.385010832482999 52 0.100075331731232 0.902181253535314 2181 0.608785072581387 3 2 1 -6.73313583603374 LTS-027 chr2 54873205 54873291 87 * SPTBN1 NA 0 NA 1.358 1 NA NA NA NA NA LTS-027 chr2 54873292 55765955 892664 * c(CFAP36, CLHC1, PRORSD1P, EML6, MTIF2, CCDC88A, RTN4, RPS27A, SPTBN1) 0.388002891985156 27 0.0661046394878859 1.29620792500184 1023 0.699348092651189 5 3 2 -6.80670275893183 LTS-027 chr2 55765956 62728162 6962207 * c(SNORA70B, MIR216B, MIR4432, MIR5192, CCT4, B3GNT2, CFAP36, CCDC85A, AHSA2, COMMD1, PUS10, TMEM17, EFEMP1, LOC339803, C2orf74, LINC01122, LINC01185, MIR216A, MIR217, PEX13, BCL11A, FANCL, PPP4R3B, REL, PAPOLG, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, USP34) 0.391966837427676 43 0.11993226678307 1.05204658673625 2383 0.657546024507409 4 2 2 -6.80605355560899 LTS-027 chr2 62728163 63101676 373514 * c(TMEM17, EHBP1) 0.316155052436865 2 0.133643181644257 0.517752065156963 101 0.428313510835645 1 1 0 -6.73742785894783 LTS-027 chr2 63101677 63169802 68126 * EHBP1 NA 0 NA 1.026 1 NA NA NA NA NA LTS-027 chr2 63169803 68389794 5219992 * c(LOC100132215, DBIL5P2, MIR4434, MIR4778, ACTR2, C1D, WDR92, LINC00309, SPRED2, CEP68, EHBP1, LGALSL, LOC339807, LOC400958, MDH1, MEIS1, OTX1, WDPCP, VPS54, ETAA1, AFTPH, PNO1, PELI1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, UGP2, SERTAD2) 0.405907635100287 27 0.0942041488068421 0.961767790416192 1902 0.596800329729707 3 2 1 -6.79565612875107 LTS-027 chr2 68389795 68400471 10677 * PNO1 NA 0 NA 3.017 1 NA NA NA NA NA LTS-027 chr2 68400472 68483344 82873 * c(PPP3R1, PNO1) 0.385633528681253 6 0.0350452088974608 1.68911605431427 128 1.16528578261087 8 5 3 -6.74460752905532 LTS-027 chr2 68483345 69304722 821378 * c(PROKR1, GKN2, APLF, CNRIP1, BMP10, PLEK, FBXO48, GKN1, ANTXR1, ARHGAP25) 0.404138489741864 17 0.0677878394438898 0.860602072229682 662 0.409760045790703 3 2 1 -6.78063850832557 LTS-027 chr2 69304723 69317863 13141 * ANTXR1 NA 0 NA 1.117 1 NA NA NA NA NA LTS-027 chr2 69317864 73675147 4357284 * c(SNORA36C, LOC100133985, MIR3126, MPHOSPH10, SMYD5, CCT7, SNRNP27, TEX261, ADD2, FBXO41, ASPRV1, CLEC4F, EGR4, EMX1, AAK1, EXOC6B, VAX2, RAB11FIP5, GFPT1, NFU1, ZNF638, ANXA4, FIGLA, NOTO, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, CYP26B1, GMCL1, SNRPG, SPR, TGFA, TIA1, ALMS1, OR7E91P, ANKRD53, DYSF, ANTXR1, PRADC1, MCEE, FAM136A, SFXN5) 0.429756432094094 71 0.0509588740166644 1.0598222049536 4473 0.548343747216981 4 2 2 -6.7446352514265 LTS-027 chr2 73675148 73762168 87021 * ALMS1 NA 0 NA 0.564159165638573 181 0.2747263101489 1 NA NA -5.77228188376163 LTS-027 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 0.975 1 NA NA NA NA NA LTS-027 chr2 73777367 77745635 3968269 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, GCFC2, ACTG2, ALMS1, MOGS, LRRTM4, INO80B, WDR54, EVA1A, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8, MRPL19) 0.405325209313505 17 0.114713293501156 1.04297107876482 3215 0.563993702882599 4 2 2 -6.77742104753671 LTS-027 chr2 77745636 85048938 7303303 * c(SNAR-H, MIR4264, TRABD2A, REG3G, CTNNA2, DHFRP3, DNAH6, LRRTM1, FUNDC2P2, REG3A, REG1A, REG1B, REG1CP, LRRTM4, SUCLG1) 0.387782281543224 13 0.122614885949506 0.864531079298191 858 0.504071939458481 3 2 1 -6.76306007106298 LTS-027 chr2 85048939 85049031 93 * TRABD2A NA 0 NA 1.476 1 NA NA NA NA NA LTS-027 chr2 85049032 86691369 1642338 * c(MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, POLR1A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, MRPL35, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, REEP1, SNORD94, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, ST3GAL5, LOC90784, TMSB10) 0.41607056180451 38 0.0877426446646406 1.18710399202125 2193 0.645088317144141 5 3 2 -6.75290875635979 LTS-027 chr2 86691370 86693504 2135 * KDM3A NA 0 NA 0.634 1 NA NA NA NA NA LTS-027 chr2 86693505 87400198 706694 * c(ANAPC1P1, RNF103-CHMP3, LOC285074, CHMP3, KDM3A, RMND5A, RNF103, CD8A, CD8B) 0.444422354685176 17 0.0487012954290806 0.93484250483417 627 0.579527685618449 4 2 2 -6.82970877642053 LTS-027 chr2 87400199 87426642 26444 * RMND5A 0.439 1 NA 0.290076496510891 95 0.277787476267172 0 0 0 -5.76530489514479 LTS-027 chr2 87426643 89246951 1820309 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.393970531259538 24 0.0783222509891027 0.96163238154515 659 0.502972432014428 3 2 1 -6.75679959260174 LTS-027 chr2 89246952 89246957 6 * character(0) NA 0 NA 0.449 1 NA NA NA NA NA LTS-027 chr2 89246958 89309762 62805 * character(0) 0.480822262369884 2 0.0261629509039023 0.641371547590137 14 0.18957876961862 2 1 1 -8.50864156076826 LTS-027 chr2 89309763 89890648 580886 * character(0) 0.21 1 NA 0.621861065787493 95 0.42531320650577 2 2 0 -5.79407128450669 LTS-027 chr2 89890649 91766642 1875994 * character(0) 0.261686058724757 5 0.168695880210514 0.69924784888798 135 0.488138559745311 2 2 0 -6.76954391789887 LTS-027 chr2 91766643 91767283 641 * character(0) NA 0 NA 1.272 1 NA NA NA NA NA LTS-027 chr2 91767284 91944161 176878 * LOC654342 0.307212788786795 16 0.0803683187995535 1.02937039504669 78 0.476473374342026 4 3 1 -6.75068953456986 LTS-027 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.74890674509971 9 0.573954218073571 7 NA NA -5.76443419488068 LTS-027 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.491 1 NA 2.95 1 NA NA NA NA NA LTS-027 chr2 95537246 96049905 512660 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.191103196985779 6 0.177339974812975 1.33788329693727 509 0.734133492304149 7 6 1 -6.76975836711553 LTS-027 chr2 96049906 96050022 117 * KCNIP3 NA 0 NA 0.729 1 NA NA NA NA NA LTS-027 chr2 96050023 96789776 739754 * c(TRIM43, GPAT2, ADRA2B, KCNIP3, ASTL, FAHD2A, TRIM43B, FAHD2CP) 0.372443689855289 33 0.0850812223345398 0.939992851117286 567 0.623545682745484 3 2 1 -6.75088064526541 LTS-027 chr2 96789777 97542014 752238 * c(MIR3127, ARID5A, ITPRIPL1, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, LMAN2L, FER1L5, NEURL3, CIAO1) 0.385395006071311 5 0.0407835751252879 1.23103440185627 1795 0.570874660672674 3 2 1 -6.86490206806913 LTS-027 chr2 97542015 97652006 109992 * FAM178B 0.46324242617872 2 0.0254558441227157 1.86762195824928 110 0.862848967056204 8 4 4 -7.68605775435191 LTS-027 chr2 97652007 112523928 14871922 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, ACTR1B, TXNDC9, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, COX5B, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, VWA3B, CREG2, LINC00116, FHL2, TMEM131, LYG2, UNC50, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1R1, INPP4A, NA NA NA NA NA NA NA NA NA LTS-027 ANKRD36, SLC9A4, AFF3, LIMS1, SULT1C3, NPAS2, NPHP1, COA5, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, ANKRD36B, RANBP2, SLC5A7, RPL31, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, LINC01125, RGPD4-AS1, RFX8, ZAP70, IL1R2, MALL, PDCL3, C2orf49, UXS1, TSGA10, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.43753958033979 148 0.0653444196461578 1.10264164328543 7713 0.635867865026093 4 2 2 -6.74495279702674 LTS-027 NA NA NA NA LTS-027 chr2 112523929 112543007 19079 * ANAPC1 0.496 1 NA 0.506522378936561 86 0.300979339247562 1 1 0 -5.76441026762495 LTS-027 chr2 112543008 112543013 6 * ANAPC1 NA 0 NA 1.165 1 NA NA NA NA NA LTS-027 chr2 112543014 113788822 1245809 * c(MERTK, FBLN7, TTL, CKAP2L, IL36B, IL37, IL36A, IL1A, IL1B, ZC3H6, FLJ42351, IL36G, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.433184984464005 53 0.0586430618937386 1.10809150284724 1681 0.594581735709796 4 2 2 -6.73711949023346 LTS-027 chr2 113788823 113789225 403 * IL36B NA 0 NA 1.75 1 NA NA NA NA NA LTS-027 chr2 113789226 114061802 272577 * c(PSD4, IL36RN, IL36B, IL1RN, PAX8-AS1, PAX8, IL1F10) 0.30199848344467 21 0.101591408523134 2.13398681828867 468 0.96514459511423 11 8 3 -6.73702098499962 LTS-027 chr2 114061803 114201773 139971 * CBWD2 NA 0 NA 0.604 1 NA NA NA NA NA LTS-027 chr2 114201774 120934973 6733200 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, C2orf76, TMEM37, CBWD2, DBI, C1QL2, FOXD4L1, CFAP221, EN1, WASH2P, DPP10-AS1, LINC01191, INSIG2, CCDC93, STEAP3, DPP10, EPB41L5, PTPN4, SCTR, FAM138B, SLC35F5, TMEM177, DDX11L2, MARCO, DDX18) 0.410781791168116 60 0.0989733400158765 1.0439248068187 2194 0.536371168262376 4 2 2 -6.78842091006493 LTS-027 chr2 120934974 120934979 6 * EPB41L5 NA 0 NA 1.2 1 NA NA NA NA NA LTS-027 chr2 120934980 130737359 9802380 * c(RAB6C-AS1, RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, LOC389033, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, EPB41L5, RALB, TSN, TMEM185B, SAP130, AMMECR1L, RAB6C, NIFK, SFT2D3, LINC01101, HS6ST1) 0.428603941465922 46 0.101338510546617 1.19138878349183 3543 0.72951066073656 4 2 2 -6.80483626970086 LTS-027 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.301 1 NA NA NA NA NA LTS-027 chr2 130737484 130739829 2346 * c(RAB6C-AS1, RAB6C) 0.466519568060842 2 0.0325269119345812 0.525434020007119 60 0.271071099977364 2 1 1 -7.46157311374889 LTS-027 chr2 130739830 130739891 62 * RAB6C 0.459 1 NA 1.81 1 NA NA NA NA NA LTS-027 chr2 130739892 132120172 1380281 * c(CYP4F30P, FAR2P2, TUBA3E, FAM168B, WTH3DI, AMER3, PTPN18, MED15P9, GPR148, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, POTEF, MZT2B, RAB6C, CCDC115, CCDC74B, IMP4) 0.419534012704737 18 0.0745205371526289 1.15959561290965 1138 0.615314093969804 4 2 2 -6.74796016238561 LTS-027 chr2 132120173 132179876 59704 * c(WTH3DI, LINC01120) NA 0 NA 0.42161587687461 47 0.195674778322132 1 NA NA -5.79608931452163 LTS-027 chr2 132179877 132181174 1298 * character(0) NA 0 NA 1.522 1 NA NA NA NA NA LTS-027 chr2 132181175 135705435 3524261 * c(CCNT2-AS1, MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, ACMSD, LOC150776, GPR39, C2orf27A, NCKAP5, NOC2LP2, C2orf27B, MGAT5, ANKRD30BL, MZT2A, TMEM163, CCNT2, CCDC74A) 0.380960535198775 29 0.0800872830504565 1.11141283999593 1083 0.569717903397221 4 2 2 -6.93766777143877 LTS-027 chr2 135705436 149544238 13838803 * c(ZEB2-AS1, LOC100507600, NXPH2, DARS, RAB3GAP1, UBXN4, R3HDM1, EPC2, HNMT, SPOPL, LCT, TEX41, MIR128-1, MCM6, ORC4, LRP1B, MBD5, ARHGAP15, YY1P2, PABPC1P2, CXCR4, GTDC1, MAP3K19, THSD7B, ZRANB3, KYNU, CCNT2, ACVR2A, ZEB2) 0.415573805355465 49 0.0892298063055913 0.904899143244571 3387 0.514822838202374 3 2 1 -6.79743998298628 LTS-027 chr2 149544239 162281836 12737598 * c(TANK, LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, PLA2R1, EPC2, ARL5A, MMADHC, GPD2, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, RIF1, CCDC148-AS1, PRPF40A, RPRM, ERMN, RBMS1, MARCH7, TNFAIP6, CACNB4, PKP4, TANC1, ACVR1, NMI, DAPL1, CYTIP, CD302) 0.411867318185864 93 0.113374407140604 1.02226527940067 5780 0.612411256810285 4 2 2 -6.84965848227572 LTS-027 chr2 162281837 164450352 2168516 * c(DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.421346684513637 7 0.0554780093713674 0.761177013317233 872 0.549777739408847 2 1 1 -6.76873134192308 LTS-027 chr2 164450353 164459089 8737 * character(0) NA 0 NA 1.342 1 NA NA NA NA NA LTS-027 chr2 164459090 165944731 1485642 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN3A) 0.427793198226141 14 0.0487104587456204 1.12680439013597 688 0.649891677417627 4 2 2 -6.73449070461884 LTS-027 chr2 165944732 171260797 5316066 * c(LOC100506124, TTC21B-AS1, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CCDC173, UBR3, MYO3B, KLHL23, CERS6, GALNT3, STK39, METTL5, LRP2, PHOSPHO2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, SSB, FASTKD1, TTC21B, CSRNP3, ABCB11, B3GALT1, PPIG) 0.428862824724434 93 0.0808243699333843 0.934589399998888 4151 0.700436134972554 4 2 2 -6.89834946043434 LTS-027 chr2 171260798 171569032 308235 * c(MYO3B, LINC01124) 0.34 1 NA 0.897220848804625 127 0.373959422489648 3 3 0 -5.7644388087495 LTS-027 chr2 171569033 179402328 7833296 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, TTN-AS1, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, DFNB59, PDE11A, PDK1, FKBP7, ZAK, ATP5G3, PLEKHA3, NA NA NA NA NA NA NA NA NA LTS-027 SP3, TTN, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, TTC30A, CIR1, TLK1) 0.375186462668367 112 0.092399926735612 0.885730827489434 5698 0.528763590901215 3 2 1 -6.74684986519322 LTS-027 NA NA NA NA LTS-027 chr2 179402329 179631214 228886 * c(MIR548N, TTN-AS1, TTN) 0.379051228565804 47 0.0746694844959681 0.564974858446197 2557 0.228160150711774 2 1 1 -7.11002007714346 LTS-027 chr2 179631215 179632496 1282 * TTN 0.318 1 NA 0.622626634025861 5 0.123518014880421 2 2 0 -5.76517408121591 LTS-027 chr2 179632497 179656794 24298 * TTN 0.182624641442627 3 0.205524532193442 0.581638603224928 223 0.421296517078396 3 3 0 -6.75036895913796 LTS-027 chr2 179656795 179739933 83139 * c(CCDC141, TTN) 0.173341281358858 6 0.141130672309979 0.788297307225549 216 0.586716997763927 3 3 0 -6.73569139699156 LTS-027 chr2 179739934 179740338 405 * CCDC141 0.386 1 NA 1.56832751551918 5 0.411108623115595 6 6 0 -5.76441361354788 LTS-027 chr2 179740339 183387367 3647029 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, PPP1R1C, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, CWC22, SSFA2, SESTD1) 0.388378192206935 11 0.0587592932688485 0.704054109999998 1220 0.433809321817826 2 1 1 -6.99966650433738 LTS-027 chr2 183387368 183582612 195245 * c(PDE1A, DNAJC10) NA 0 NA 0.978 1 NA NA NA NA NA LTS-027 chr2 183582613 200134953 16552341 * c(LOC100130452, NEMP2, MIR1245A, MIR3129, MIR3606, HSPE1-MOB4, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, RFTN2, DUSP19, ANKAR, ZSWIM2, FAM171B, SATB2, SF3B1, TMEFF2, FRZB, MOB4, HIBCH, MSTN, GLS, CCDC150, SLC40A1, HSPD1, HSPE1, INPP1, ITGAV, FSIP2, C2orf66, MYO1B, NAB1, GULP1, PLCL1, PMS1, DNAJC10, ASNSD1, MFSD6, ZC3H15, DNAH7, SLC39A10, HECW2, PCGEM1, OSGEPL1, NABP1, BOLL, NA NA NA NA NA NA NA NA NA LTS-027 STAT1, STAT4, MIR561, TFPI, PGAP1, COQ10B, WDR75, C2orf88, SDPR, ANKRD44, ZNF804A, STK17B, MARS2, GTF3C3, ORMDL1) 0.42604972693045 58 0.0715325219315655 0.933432860575205 7555 0.544962470913111 3 2 1 -6.9533877666671 LTS-027 NA NA NA NA LTS-027 chr2 200134954 207040690 6905737 * c(SNORD11B, GCSHP3, LOC100507140, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, EEF1B2, C2orf69, SATB2, SPATS2L, SNORD51, GPR1, FAM126B, ICOS, AOX1, AOX2P, FTCDNL1, NDUFB3, NDUFS1, ORC2, NOP58, PPIL3, INO80D, STRADB, WDR12, CYP20A1, ALS2, MPP4, NIF3L1, SNORA41, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, NA NA NA NA NA NA NA NA NA LTS-027 C2orf47, CARF, FZD7, CASP8, CASP10, NRP2, CFLAR, CD28, BZW1) 0.42764497873982 91 0.0783430311197526 1.09935195306558 5978 0.664872874160279 4 2 2 -6.73309530157076 LTS-027 NA NA NA NA LTS-027 chr2 207040691 207834257 793567 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, ADAM23) 0.346056431245321 17 0.17347194212864 0.863061940534974 804 0.484203716429595 3 2 1 -6.76896603912458 LTS-027 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.345 1 NA NA NA NA NA LTS-027 chr2 207908643 208992878 1084236 * c(MIR2355, LOC100507443, MIR4775, CREB1, CRYGC, CRYGD, METTL21A, CCNYL1, PLEKHM3, FZD5, KLF7) 0.459200239565467 10 0.03945968406699 1.16996318918224 879 0.742427842948262 4 2 2 -7.08189259813852 LTS-027 chr2 208992879 208992893 15 * c(LOC100507443, CRYGC, CRYGD) NA 0 NA 0.748 1 NA NA NA NA NA LTS-027 chr2 208992894 210887242 1894349 * c(LOC100507443, IDH1-AS1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, PIKFYVE, UNC80, IDH1, C2orf80, MAP2, PTH2R, RPE) 0.450475815451731 17 0.0405763622873045 0.907416618346492 1377 0.64025524125919 4 2 2 -7.00470140544982 LTS-027 chr2 210887243 211074909 187667 * c(KANSL1L, ACADL) 0.367 1 NA 0.554118987722607 153 0.204182843865321 1 1 0 -5.78562508687605 LTS-027 chr2 211074910 211168277 93368 * c(ACADL, MYL1) 0.244 1 NA 0.646011105902092 59 0.374069331797239 2 2 0 -5.76738907847306 LTS-027 chr2 211168278 214727367 3559090 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, LANCL1, CPS1, ERBB4, IKZF2, CPS1-IT1, MYL1, SPAG16) 0.221128005779313 26 0.104019709670812 0.613291808365853 970 0.344773392240869 2 2 0 -7.05821854730096 LTS-027 chr2 214727368 215440612 713245 * c(VWC2L-IT1, VWC2L, SPAG16) NA 0 NA 0.664213109787475 59 0.390876238445642 2 NA NA -5.77397900971351 LTS-027 chr2 215440613 215440764 152 * VWC2L NA 0 NA 2.58 1 NA NA NA NA NA LTS-027 chr2 215440765 215440962 198 * character(0) 0.456 1 NA 2.06362637524314 3 0.622255842345681 9 9 0 -5.76441016559217 LTS-027 chr2 215440963 216299557 858595 * c(FN1, ABCA12, ATIC, BARD1) 0.434364381650234 28 0.0932650756640681 0.972035121302495 921 0.619512876210637 4 2 2 -6.75549333297887 LTS-027 chr2 216299558 216300298 741 * FN1 NA 0 NA 2.431 1 NA NA NA NA NA LTS-027 chr2 216300299 224461948 8161650 * c(LOC100129175, MIR3131, MIR4268, MIR3132, FARSB, ABCB6, ARPC2, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, AAMP, CRYBA2, PKI55, CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EPHA4, ACSL3, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, CNPPD1, STK36, RUFY4, GMPPA, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PAX3, PRKAG3, FEV, ANKZF1, NA NA NA NA NA NA NA NA NA LTS-027 ASIC4, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC4A3, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.446208542038463 97 0.085985842307438 1.2280348650357 7213 0.699855228770455 5 3 2 -6.85896020735505 LTS-027 NA NA NA NA LTS-027 chr2 224461949 231267848 6805900 * c(MIR4439, MIR5702, MIR5703, SP140, COL4A3, COL4A4, AP1S3, FBXO36, SLC16A14, DAW1, AGFG1, SP110, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER, TRIP12, SP140L) 0.417614650850794 64 0.122336512220278 0.973483569717288 3645 0.564270368841335 3 2 1 -6.84705847908508 LTS-027 chr2 231267849 234418780 3150932 * c(MIR1471, MIR4777, NMUR1, CHRND, CHRNG, DIS3L2, SPATA3, LOC151475, LINC00471, LOC151484, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, HTR2B, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, ATG16L1, USP40, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SCARNA6, SCARNA5, ARMC9, EFHD1, ITM2C, DGKD, GPR55, B3GNT7, SP140L, ECEL1, EIF4E2) 0.44006630818913 60 0.0446525949670132 1.14924794685891 3634 0.612934599295951 4 2 2 -6.78367244802358 LTS-027 chr2 234418781 234420275 1495 * USP40 NA 0 NA 0.386 1 NA NA NA NA NA LTS-027 chr2 234420276 234678115 257840 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.445527005750741 15 0.0408356753458588 0.754389069234487 357 0.450745439816575 2 1 1 -6.83994067493213 LTS-027 chr2 234678116 241657507 6979392 * c(PP14571, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, MSL3P1, SH3BP4, TRAF3IP1, GBX2, GPC1, DUSP28, GPR35, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, PRLH, ANKMY1, SCLY, ASB1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, NA NA NA NA NA NA NA NA NA LTS-027 KIF1A, HJURP, HES6, ACKR3, RNPEPL1, RAB17, LOC643387, PRR21, AQP12B, SPP2, TRPM8, MLPH, IQCA1, ILKAP, MGC16025, PER2, LRRFIP1, HDAC4) 0.43808774137059 181 0.0686081116892467 1.18469355044231 5137 0.689621156480146 4 2 2 -6.79460087202353 LTS-027 NA NA NA NA LTS-027 chr2 241657508 242122121 464614 * c(MTERF4, AGXT, LOC200772, PASK, SNED1, KIF1A, PPP1R7, C2orf54) 0.397014701178311 13 0.0741793564482527 1.53617976655204 1097 1.98131975843214 8 5 3 -6.74078980288188 LTS-027 chr2 242122122 242815745 693624 * c(BOK-AS1, STK25, NEU4, DTYMK, ATG4B, RTP5, HDLBP, SEPT2, ANO7, THAP4, PDCD1, PPP1R7, GAL3ST2, BOK, D2HGDH, ING5, FARP2) 0.436805476906417 38 0.0857281795452146 1.25020120988569 1516 0.668480267721776 4 2 2 -6.75426779909889 LTS-027 chr2 242815746 243037218 221473 * LOC728323 NA 0 NA 1.3448160107261 45 0.669639770490241 5 NA NA -5.76481905692699 LTS-027 chr3 239351 361493 122143 * CHL1 0.167 1 NA 0.775268892519151 9 0.442126395954822 2 2 0 -5.76787131099954 LTS-027 chr3 361494 4356098 3994605 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.206865831396136 17 0.0820359946106872 0.57532670721735 876 0.276293128558157 2 2 0 -7.81678509396715 LTS-027 chr3 4356099 4358301 2203 * c(SUMF1, SETMAR) NA 0 NA 1.123 1 NA NA NA NA NA LTS-027 chr3 4358302 16524209 12165908 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, MIR4270, FGD5-AS1, SH3BP5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, GALNT15, CHCHD4, METTL6, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, FANCD2, FBLN2, CAND2, RFTN1, NUP210, ANKRD28, CAPN7, MKRN2, THUMPD3, HACL1, TTLL3, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, GRM7, LINC00312, LMCD1, NA NA NA NA NA NA NA NA NA LTS-027 HRH1, COL6A4P1, TPRXL, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, RAF1, RPL32, CIDEC, SEC13, RBSN, SETMAR, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, BHLHE40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CAV3, OXNAD1, SH3BP5, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.207782604686238 217 0.080176211091916 0.782669883962863 9558 0.442497360285513 2 2 0 -7.13652818021823 LTS-027 NA NA NA NA LTS-027 chr3 16524210 20053837 3529628 * c(MIR3714, MIR4791, KCNH8, PP2D1, EFHB, DAZL, RFTN1, PLCL2, LOC339862, RAB5A, SATB1, TBC1D5) 0.242107209176746 29 0.0893693283363517 0.553121196093901 982 0.381017172968817 1 1 0 -7.12843231228797 LTS-027 chr3 20053838 20081505 27668 * character(0) NA 0 NA 1.116 1 NA NA NA NA NA LTS-027 chr3 20081506 44791637 24710132 * c(ACVR2B-AS1, PDCD6IP, KRBOX1, MIR548AC, MIR4792, MIR4442, SNRK-AS1, SGO1-AS1, CCDC13-AS1, OSBPL10-AS1, ZNF197, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, ZNF501, LRRC3B, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, SGO1, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, NA NA NA NA NA NA NA NA NA LTS-027 GOLGA4, NKIRAS1, ENTPD3-AS1, ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, ACAA1, C3orf35, GADL1, ZNF860, ZNF445, ITGA9, TOPAZ1, ZNF662, VENTXP7, RPSA, MIR128-2, MIR138-1, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, DYNC1LI1, SS18L2, PLCD1, SNRK, CMTM6, SLC25A38, ULK4, OXSM, ANO10, NGLY1, ZKSCAN7, SNORA6, KIAA1143, HHATL, WDR48, RARB, SNORA62, RPL15, SCN5A, SCN10A, AZI2, TMPPE, THRB-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, THRB, TOP2B, FAM198A, UBE2E1, UBE2E2, UBP1, VIPR1, ZNF35, ZNF385D, EOMES, POMGNT2, DCLK3, CCK, KAT2B, RPL14, SEC22C, ZNF502, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SLC4A7, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.22033613028594 149 0.0884116461381878 0.71713126992614 12674 0.450753146959562 2 2 0 -6.75700476283543 LTS-027 NA NA NA NA LTS-027 chr3 44791638 44803229 11592 * c(KIF15, KIAA1143) NA 0 NA 0.320867751521187 98 0.207535384525151 0 NA NA -5.76460692464275 LTS-027 chr3 44803230 45883673 1080444 * c(LARS2-AS1, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ZDHHC3, LZTFL1, SLC6A20, KIF15, LIMD1-AS1, CDCP1, MIR564, TGM4, CLEC3B, LIMD1) 0.224466133998605 25 0.0883568899407398 0.7352694095053 1467 0.413711122930564 2 2 0 -6.741547990041 LTS-027 chr3 45883674 45896445 12772 * LZTFL1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-027 chr3 45896446 45943456 47011 * c(CCR9, LZTFL1) NA 0 NA 0.26251543358114 39 0.106333109116902 0 NA NA -5.83222076676496 LTS-027 chr3 45943457 45943543 87 * c(CCR9, LZTFL1) NA 0 NA 0.915 1 NA NA NA NA NA LTS-027 chr3 45943544 46713671 770128 * c(LOC100132146, CXCR6, CCR9, CCR1, CCR3, CCR5, ALS2CL, XCR1, LTF, LZTFL1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.244345342273678 24 0.0673878563867838 0.652586858280451 1145 0.346518667450873 2 2 0 -6.83206937565043 LTS-027 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 0.842 1 NA NA NA NA NA LTS-027 chr3 46714809 67048835 20334027 * c(SNORD19B, LINC00696, NRADDP, BSN-AS2, PRSS46, LINC00994, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, PRICKLE2-AS1, RBM5-AS1, MIR5193, MAGI1-AS1, SYNPR-AS1, ARHGEF3-AS1, CACNA2D3-AS1, PRICKLE2-AS2, PRICKLE2-AS3, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NA NA NA NA NA NA NA NA NA LTS-027 NISCH, TREX1, TUSC2, TWF2, SLC25A26, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, C3orf49, SNTN, SYNPR, LSMEM2, ASB14, CCDC12, DAG1, PRICKLE2, DNASE1L3, DOCK3, DUSP7, CELSR3, C3orf67, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, FHIT, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, FLNB, NBEAL2, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, ALS2CL, TMIE, PTPN23, DNAH1, LRIG1, ERC2, APPL1, GNL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, LINC00698, GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, PRSS45, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYL3, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, FEZF2, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, ADAMTS9, PCBP4, ABHD6, LRTM1, C3orf14, PTH1R, PTPRG, SELENOK, QARS, RPL29, ATXN7, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, MIR548A2, TCTA, TKT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, THOC7, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, KBTBD8, ABHD14B, CADPS, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, MAGI1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, PSMD6, CDC25A) 0.222414267786701 309 0.0688754480506433 0.760158417668311 21944 0.405401945051304 2 2 0 -7.13873047574068 LTS-027 NA NA NA NA LTS-027 chr3 67048836 67049346 511 * KBTBD8 NA 0 NA 0.298 1 NA NA NA NA NA LTS-027 chr3 67049347 69024666 1975320 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.222269166103837 14 0.0851075918928635 0.51248455753157 342 0.389288531129374 1 1 0 -7.25814296654105 LTS-027 chr3 69024667 74413676 5389010 * c(MIR1284, MIR3136, ARL6IP5, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.26158351638089 28 0.0625367087964337 0.764118357808369 2005 0.486008622224597 2 2 0 -7.07614690219054 LTS-027 chr3 74413677 75679988 1266312 * c(MIR1324, CNTN3, FAM86DP) 0.381 1 NA 0.649714955127566 57 0.346566066170004 2 2 0 -5.80519074224907 LTS-027 chr3 75679989 75787688 107700 * c(ZNF717, MIR1324) 0.348025162836673 169 0.0814798397501755 0.832507718885432 296 0.488083571756704 4 3 1 -6.82288171886459 LTS-027 chr3 75787689 75787691 3 * ZNF717 NA 0 NA 0.457 1 NA NA NA NA NA LTS-027 chr3 75787692 89480265 13692574 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.35603919747155 55 0.0877237399194457 0.589338059397475 1610 0.348036183533248 1 1 0 -8.1655796054804 LTS-027 chr3 89480266 90283666 803401 * EPHA3 NA 0 NA 0.537114356314328 105 0.321193288775744 1 NA NA -5.77988141888371 LTS-027 chr3 93591838 93847252 255415 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.364 1 NA 0.813017673166141 361 0.54806776416344 3 3 0 -5.76983940205965 LTS-027 chr3 93847253 98217541 4370289 * c(MTHFD2P1, CRYBG3, GABRR3, LINC00879, OR5K1, OR5H1, EPHA6, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, OR5H6, OR5H2, OR5AC2, ARL6, MINA) 0.272883722878111 10 0.0792279411992175 0.787088129973026 839 0.484209449492097 2 2 0 -7.12366531091983 LTS-027 chr3 98217542 98219701 2160 * character(0) NA 0 NA 1.732 1 NA NA NA NA NA LTS-027 chr3 98219702 101579854 3360153 * c(ZBTB11-AS1, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, DCBLD2, FAM172BP, CPOX, ABI3BP, ZBTB11, GPR15, PDCL3P4, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, CEP97, CMSS1, ADGRG7, NXPE3, TOMM70) 0.303576120694104 66 0.0912243322139372 1.01701931918614 2686 0.626289243449834 4 3 1 -6.78338250162242 LTS-027 chr3 101579855 107429450 5849596 * c(LINC00882, ZPLD1, LOC152225, ALCAM, DUBR, BBX, NFKBIZ, MIR548A3, CCDC54, CBLB) 0.16807869947226 9 0.0835266091999696 0.787538960788465 440 0.492667333886946 3 3 0 -6.98708315952803 LTS-027 chr3 107429451 107430084 634 * BBX NA 0 NA 1.484 1 NA NA NA NA NA LTS-027 chr3 107430085 109052732 1622648 * c(HHLA2, LINC00635, DPPA2, MYH15, MORC1, LINC00636, FLJ22763, TRAT1, IFT57, DPPA4, BBX, KIAA1524, LINC00488, RETNLB, CD47, GUCA1C, DZIP3) 0.295289579002549 17 0.0537624814509589 1.05914163536717 1471 0.776422262819987 4 3 1 -6.86153161567249 LTS-027 chr3 109052733 110854409 1801677 * c(PVRL3-AS1, NECTIN3, LINC01205, DPPA4) 0.425 1 NA 1.0642359642686 179 0.910397168386214 4 4 0 -5.76572643454307 LTS-027 chr3 110854410 111940096 1085687 * c(CD96, PLCXD2, GCSAM, NECTIN3, SLC9C1, TAGLN3, TMPRSS7, ABHD10, MIR567, ZBED2, C3orf52, PHLDB2) 0.365870095035669 31 0.136635375384457 1.1193704834741 1044 0.629985273339341 4 3 1 -6.7998373680455 LTS-027 chr3 111940097 111950168 10072 * SLC9C1 NA 0 NA 1.538 1 NA NA NA NA NA LTS-027 chr3 111950169 116164345 4214177 * c(ZBTB20-AS1, MIR4796, MIR4446, CFAP44-AS1, CD200R1, CCDC80, BTLA, SPICE1, DRD3, TIGIT, USF3, ZDHHC23, NEPRO, GAP43, ZBTB20, SLC9C1, GTPBP8, CD200R1L, LSAMP, CD200, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, CFAP44, CCDC191, ATG3, MIR568, ZNF80, QTRT2, NAA50, BOC) 0.419192544274115 38 0.128658338223024 1.29537568893123 2861 0.799323350814805 5 3 2 -6.73528165617171 LTS-027 chr3 116164346 116363133 198788 * LSAMP NA 0 NA 0.335 1 NA NA NA NA NA LTS-027 chr3 116363134 116569242 206109 * TUSC7 NA 0 NA 0.335524180517232 39 0.271296432681974 0 NA NA -5.77503088092626 LTS-027 chr3 116569243 116728074 158832 * character(0) NA 0 NA 0.745 1 NA NA NA NA NA LTS-027 chr3 116728075 121724307 4996233 * c(IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, ADPRH, IGSF11, C3orf30, GPR156, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, B4GALT4, NR1I2, MAATS1, CD80, STXBP5L, IQCB1) 0.368851693127563 57 0.137184020621151 1.16090987599473 3596 0.645524943946981 4 3 1 -6.8293141510527 LTS-027 chr3 121724308 121725829 1522 * ILDR1 NA 0 NA 0.604 1 NA NA NA NA NA LTS-027 chr3 121725830 123687807 1961978 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, CCDC58, CSTA, DTX3L, PARP15, HACD2, FAM162A, SEC22A, ILDR1, KPNA1, MYLK, SEMA5B, WDR5B, PARP14, CCDC14, HSPBAP1, PARP9, CASR, DIRC2, CD86) 0.392228723565091 64 0.0587674661642399 0.942410026918787 2531 0.608134539194592 3 2 1 -6.74544492549953 LTS-027 chr3 123687808 123687859 52 * character(0) NA 0 NA 0.374 1 NA NA NA NA NA LTS-027 chr3 123687860 123699253 11394 * ROPN1 NA 0 NA 0.367428902480422 71 0.205767852823353 0 NA NA -5.76909498159451 LTS-027 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 0.836 1 NA NA NA NA NA LTS-027 chr3 123699426 125690980 1991555 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.368460607025922 39 0.084753496657551 0.950194303640907 1573 0.549332915676378 3 2 1 -6.7704425092062 LTS-027 chr3 125690981 125690988 8 * ROPN1B NA 0 NA 0.425 1 NA NA NA NA NA LTS-027 chr3 125690989 125725475 34487 * c(ROPN1B, SLC41A3) NA 0 NA 0.387921480275748 76 0.423237145585674 0 NA NA -5.77023590405189 LTS-027 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 0.742 1 NA NA NA NA NA LTS-027 chr3 125725550 129369728 3644179 * c(ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, RPL32P3, H1FOO, C3orf22, DNAJB8, CHST13, KBTBD12, COPG1, TMCC1, PLXND1, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, H1FX-AS1, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, TXNRD3NB, LOC653712, SNORA7B, CNBP, RAB7A, ZXDC, EFCC1, ABTB1, CHCHD6, RUVBL1, NA NA NA NA NA NA NA NA NA LTS-027 MBD4, H1FX, LOC90246, EFCAB12) 0.375309020554778 65 0.0738402479108681 1.01315355486746 3885 0.518070713794576 3 2 1 -6.85551301560016 LTS-027 NA NA NA NA LTS-027 chr3 129369729 133614377 4244649 * c(TMCC1-AS1, NPHP3-ACAD11, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, TMCC1, DNAJC13, COL6A5, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, ALG1L2, COL6A4P2, TMEM108, SNORA58, TF, TRH, FAM86HP, NEK11, UBA5, ACAD11, BFSP2) 0.397169356325979 60 0.0589707961813293 0.826355672740038 3115 0.448796144462448 3 2 1 -6.84745415494318 LTS-027 chr3 133614378 133614495 118 * RAB6B NA 0 NA 1.6 1 NA NA NA NA NA LTS-027 chr3 133614496 142259945 8645450 * c(MIR4788, STAG1, GRK7, PISRT1, DZIP1L, EPHB1, MRAS, ZBTB38, GK5, ANAPC13, ARMC8, TRIM42, KY, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, ATP1B3, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, RAB6B, PIK3CB, IL20RB, XRN1, ATR, MSL2, FAIM, SLC25A36, PPP2R3A, MRPS22, RASA2, RBP1, RBP2, BPESC1, RYK, CLSTN2, SLCO2A1, FOXL2, TFDP2, PRR23A, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, SPSB4, PXYLP1, COPB2, NA NA NA NA NA NA NA NA NA LTS-027 RNF7) 0.361859150829746 53 0.0926081409995386 0.92228817799552 5244 0.549024405037522 3 2 1 -6.7835049160795 LTS-027 NA NA NA NA LTS-027 chr3 142259946 148614920 6354975 * c(LOC100289361, LOC100507389, SLC9A9-AS1, CPA3, CPB1, AGTR1, C3orf58, U2SURP, PCOLCE2, SLC9A9, PAQR9, PLSCR5, PLOD2, PLS1, PLSCR1, ATR, PLSCR2, PLSCR4, TRPC1, ZIC1, ZIC4, CHST2) 0.367446683248779 31 0.0682989003201826 0.789887404344162 1828 0.486303928572258 3 2 1 -7.04715861419394 LTS-027 chr3 148614921 148703460 88540 * character(0) 0.32 1 NA 0.367245378924419 39 0.194099429144091 0 0 0 -5.80484512159767 LTS-027 chr3 148703461 148703559 99 * character(0) NA 0 NA 0.638 1 NA NA NA NA NA LTS-027 chr3 148703560 150645517 1941958 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, CLRN1-AS1, ERICH6, CP, WWTR1, SERP1, GYG1, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, LOC646903, SIAH2, HLTF, TM4SF4, CLRN1, EIF2A, HPS3, TSC22D2) 0.353227256514759 32 0.0802491081248802 0.914861863175032 1694 0.813509459974709 3 2 1 -6.83356481819171 LTS-027 chr3 150645518 156233027 5587510 * c(MIR548H2, ARHGEF26-AS1, LOC100507537, MIR5186, KCNAB1-AS2, KCNAB1-AS1, MED12L, CLRN1-AS1, AADAC, C3orf79, DHX36, AADACP1, PLCH1, ARHGEF26, IGSF10, C3orf33, GPR171, AADACL2, GPR149, MBNL1-AS1, MBNL1, MME, P2RY1, P2RY13, GPR87, SUCNR1, RAP2B, TMEM14EP, P2RY12, CLRN1, KCNAB1, GMPS, SLC33A1, P2RY14) 0.417824418588006 17 0.0667352649521622 0.63803580968352 2345 0.384665693298242 2 1 1 -6.96115292424217 LTS-027 chr3 156233028 156763740 530713 * c(TIPARP-AS1, TIPARP, LEKR1, PA2G4P4, SSR3, LINC00886, KCNAB1) NA 0 NA 0.67976619521856 382 0.524852158125892 2 NA NA -5.76585423766651 LTS-027 chr3 156763741 156877707 113967 * c(LINC00881, LINC00880, LEKR1, CCNL1) 0.269 1 NA 1.42059693982228 91 1.20151176385474 6 6 0 -5.76452704719731 LTS-027 chr3 156877708 158991366 2113659 * c(IQCJ-SCHIP1, PQLC2L, SCHIP1, MLF1, RSRC1, LXN, CCNL1, PTX3, RARRES1, SHOX2, MFSD1, IQCJ, VEPH1, GFM1) 0.232583986327807 20 0.0655193623450752 1.37622900695346 1025 0.846218870019757 6 5 1 -6.74630293151117 LTS-027 chr3 158991367 160203333 1211967 * c(MIR3919, IQCJ-SCHIP1, SMC4, TRIM59, SCHIP1, IL12A, C3orf80, MIR15B, MIR16-2, IFT80) 0.358866875781664 10 0.0888746933109257 0.862347273652251 576 0.542830950875928 3 2 1 -6.79445194675211 LTS-027 chr3 160203334 169854495 9651162 * c(LOC100128164, LOC101243545, PDCD10, OTOL1, PPM1L, WDR49, LRRC34, SPTSSB, MECOM, SLITRK3, GPR160, GOLIM4, LRRIQ4, SAMD7, KPNA4, NMD3, SERPINI1, SERPINI2, MYNN, BCHE, LINC01330, LINC01192, SI, SCARNA7, MIR551B, TERC, SEC62, ZBBX, LRRC31, PHC3, ARL14, ACTRT3, B3GALNT1, EGFEM1P) 0.21547380160522 36 0.0706154351579007 1.46653359548463 2597 1.02284356343862 6 5 1 -6.78469343124794 LTS-027 chr3 169854496 169863158 8663 * PHC3 NA 0 NA 2.572 1 NA NA NA NA NA LTS-027 chr3 169863159 170151224 288066 * c(CLDN11, PRKCI, SKIL, PHC3) 0.227051724524913 3 0.019 2.10835216337684 391 1.31177192594749 15 12 3 -6.75585978704262 LTS-027 chr3 170151225 170184129 32905 * c(CLDN11, SLC7A14) 0.05 1 NA 1.76894092026732 55 0.651990339417389 7 7 0 -5.76450657361438 LTS-027 chr3 170184130 172523607 2339478 * c(ECT2, RPL22L1, TNIK, GHSR, TMEM212, CLDN11, PLD1, EIF5A2, NCEH1, SLC7A14, FNDC3B, SLC2A2, MIR569, TNFSF10) 0.151139171082152 25 0.0503950394384209 1.81442580839692 1409 1.04593981819842 10 9 1 -6.8021749743731 LTS-027 chr3 172523608 174004446 1480839 * c(ECT2, NLGN1, SPATA16) 0.228258562046892 6 0.0228975981273146 1.08933301533031 325 0.564548617279818 6 5 1 -7.06442302550578 LTS-027 chr3 174577087 176782848 2205762 * c(MIR4789, NAALADL2-AS3, NAALADL2, TBL1XR1) 0.0416902057330708 5 0.0363703175680389 4.858108428361 342 2.63815253060753 18 18 0 -6.74405643839701 LTS-027 chr3 178525097 178956166 431070 * c(KCNMB2, PIK3CA, ZMAT3) 0.165218997923823 8 0.0365589055009661 2.57306803177243 441 1.74131566890127 15 13 2 -6.74184810429525 LTS-027 chr3 178956167 178962387 6221 * KCNMB3 0.104442230677817 3 0.0254230866208911 1.28221351084046 88 1.07893455847821 6 6 0 -6.73342214467295 LTS-027 chr3 178962388 178968524 6137 * KCNMB3 NA 0 NA 4.587 1 NA NA NA NA NA LTS-027 chr3 178968525 181432262 2463738 * c(DNAJC19, TTC14, KCNMB3, CCDC39, SOX2-OT, NDUFB5, ZNF639, PEX5L, MFN1, MRPL47, GNB4, SOX2, FXR1, ACTL6A, USP13) 0.133344394386718 17 0.0496783773534381 2.43775966994246 1476 1.60703800497088 12 11 1 -6.73869253281383 LTS-027 chr3 181432263 181582766 150504 * SOX2-OT NA 0 NA 1.468 1 NA NA NA NA NA LTS-027 chr3 181582767 182991223 1408457 * c(MCF2L2, ATP11B, LAMP3, FLJ46066, DCUN1D1, MCCC1, B3GNT5) 0.146168686273387 11 0.0688623132186117 1.92088070216164 819 1.3949725162759 10 9 1 -6.75443901946231 LTS-027 chr3 182991224 184637941 1646718 * c(MIR1224, LINC00888, ABCC5, ABCC5-AS1, ALG3, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EIF4G1, HTR3D, EPHB3, MCF2L2, VPS8, HTR3E, POLR2H, KLHL24, ABCF3, PARL, YEATS2, PSMD2, MAGEF1, SNORD66, THPO, MAP6D1, CHRD, EIF2B5, KLHL6, VWA5B2, CAMK2N2, ECE2) 0.159529093448775 71 0.0470242884285693 2.42193373497862 3201 1.28553220921432 10 9 1 -6.74227420250462 LTS-027 chr3 184637942 184801399 163458 * c(VPS8, C3orf70) NA 0 NA 2.3048974396081 209 0.982771066443015 10 NA NA -5.76442053353002 LTS-027 chr3 184801400 184870393 68994 * C3orf70 NA 0 NA 1.663 1 NA NA NA NA NA LTS-027 chr3 184870394 185225638 355245 * c(EHHADH, LIPH, C3orf70, EHHADH-AS1, TMEM41A, MAP3K13) 0.3 1 NA 1.30431144826672 463 0.717147820088713 5 5 0 -5.76442800517394 LTS-027 chr3 185225639 189625218 4399580 * c(MIR944, LOC100131635, TPRG1-AS2, ADIPOQ-AS1, IGF2BP2, RPL39L, RTP1, CRYGS, DGKG, AHSG, EIF4A2, LIPH, ETV5, LOC253573, FETUB, TPRG1, HRG, LPP-AS2, NMRAL1P1, RTP2, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, MASP1, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, TRA2B, IGF2BP2-AS1, ST6GAL1, SST, SNORA81, TP63, ADIPOQ) 0.267456529097354 52 0.0973520825605896 1.16010870338747 2828 0.640566959909929 5 4 1 -6.81187946341243 LTS-027 chr3 189625219 189700876 75658 * P3H2 NA 0 NA 1.58515742832778 62 0.7719737304518 6 NA NA -5.76468365175968 LTS-027 chr3 189700877 189712010 11134 * P3H2 0.46 1 NA 0.837158350751725 25 0.443821465606761 3 3 0 -5.76459555352028 LTS-027 chr3 189712011 193386538 3674528 * c(SNAR-I, OPA1-AS1, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, OSTN, ATP13A5, IL1RAP, OPA1, P3H2, HRASLS, GMNC, ATP13A4, MGC2889, CLDN1) 0.406612352559178 48 0.0647249362756467 0.749201320122686 1525 0.553529715465539 2 1 1 -6.82792831809133 LTS-027 chr3 193386539 193410043 23505 * OPA1 NA 0 NA 0.927412597047484 13 1.18177891767302 3 NA NA -5.76441830200351 LTS-027 chr3 193410044 193853847 443804 * c(DPPA2P3, OPA1, LOC647323) NA 0 NA 3.467 1 NA NA NA NA NA LTS-027 chr3 193853848 194183002 329155 * c(LINC00887, LRRC15, CPN2, GP5, HES1, ATP13A3) NA 0 NA 1.32688301843117 511 0.668584172988005 5 NA NA -5.76465878681889 LTS-027 chr3 194183003 194219352 36350 * c(LINC00884, ATP13A3) NA 0 NA 1.617 1 NA NA NA NA NA LTS-027 chr3 194219353 194313832 94480 * c(TMEM44-AS1, LINC00884, TMEM44) 0.24 1 NA 2.06487601115755 33 1.3746133195954 9 9 0 -5.76441282068162 LTS-027 chr3 194313833 195453067 1139235 * c(LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, MUC20, ACAP2, APOD, PPP1R2, LSG1, MIR570, SDHAP2, TMEM44) 0.262215811887161 39 0.0867962464284146 1.86298277169265 829 1.33088915831155 9 7 2 -6.73804091051231 LTS-027 chr3 195453068 195453157 90 * MUC20 NA 0 NA 4.607 1 NA NA NA NA NA LTS-027 chr3 195453158 195476016 22859 * c(MUC20, MUC4) 0.387885385367899 4 0.153736517023987 6.97095186240181 71 6.69460343068691 18 11 7 -6.7336301455482 LTS-027 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 2.792 1 NA NA NA NA NA LTS-027 chr3 195477782 195710993 233212 * c(TNK2, SDHAP1, MUC4) 0.21948206757464 22 0.0645361739562995 2.60712581381104 409 1.54793239891131 11 9 2 -6.73386821688494 LTS-027 chr3 195710994 195925103 214110 * c(ZDHHC19, SDHAP1, LINC00885, TFRC) 0.127 1 NA 2.47952573500379 149 1.06132089897809 11 11 0 -5.76441014255143 LTS-027 chr3 195925104 197249695 1324592 * c(MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, CEP19) 0.136180254885374 47 0.0371905984160754 2.59724194639326 1972 1.50883617857977 12 11 1 -6.74218460282457 LTS-027 chr3 197249696 197259235 9540 * BDH1 NA 0 NA 1.316 1 NA NA NA NA NA LTS-027 chr3 197259236 197766946 507711 * c(MIR922, LOC220729, RPL35A, BDH1, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.186198476669433 13 0.0541885360191382 1.86152784141078 735 0.94404964520237 8 7 1 -6.73313624302185 LTS-027 chr3 197766947 197770512 3566 * LMLN NA 0 NA 2.06908323891383 67 0.929931821518652 9 NA NA -5.76441027108093 LTS-027 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.265 1 NA 0.532199709279145 11 0.437312307790959 1 1 0 -5.76446258186918 LTS-027 chr4 60304 1746918 1686615 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, TACC3, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, ZNF718, GAK, CRIPAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, ZNF141, SLBP, ABCA11P, MFSD7, TMEM175, CTBP1-AS2, TMEM129) 0.208869630522837 92 0.067720279913144 0.807928170716194 2577 0.49481511779217 2 2 0 -6.82643025133661 LTS-027 chr4 1746919 1795503 48585 * FGFR3 NA 0 NA 2.164 1 NA NA NA NA NA LTS-027 chr4 1795504 2357708 562205 * c(MIR943, MIR4800, MXD4, FGFR3, NAT8L, POLN, LETM1, C4orf48, ZFYVE28, SCARNA22, WHSC1, NELFA, HAUS3) 0.155145715828476 11 0.0621161668313345 1.06449397500102 1447 0.610355098212778 4 4 0 -6.76441447633584 LTS-027 chr4 2357709 2419955 62247 * ZFYVE28 NA 0 NA 0.444 1 NA NA NA NA NA LTS-027 chr4 2419956 3526786 1106831 * c(HTT-AS, MFSD10, ADD1, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, CFAP99, LRPAP1, ZFYVE28, RGS12, RNF4, SH3BP2, TNIP2, NOP14, FAM193A) 0.210296314052839 79 0.0745225808734872 0.84056405002128 2154 0.527900070163571 2 2 0 -6.8170766874734 LTS-027 chr4 3526787 3589560 62774 * c(LINC00955, LRPAP1) 0.473 1 NA 1.13650886984643 13 0.408405875293634 4 4 0 -5.76467011820824 LTS-027 chr4 3589561 3591783 2223 * LINC00955 0.407563308583807 22 0.0850070025126782 0.935182991588369 49 1.03279070457464 5 3 2 -6.73432778173237 LTS-027 chr4 3591784 3768424 176641 * c(LOC100133461, ADRA2C, LINC00955) NA 0 NA 0.691 1 NA NA NA NA NA LTS-027 chr4 3768425 4239516 471092 * c(OTOP1, ADRA2C, FAM86EP, TMEM128) 0.352462867039964 4 0.0974354487169155 0.687358651022956 88 0.349980838220055 3 2 1 -6.96946690679728 LTS-027 chr4 4239517 4249620 10104 * TMEM128 0.281 1 NA 0.571297173648681 22 0.21364515732109 1 1 0 -5.76630017063322 LTS-027 chr4 4249621 17805039 13555419 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, CRMP1, LINC01085, JAKMIP1, TRMT44, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, LINC01097, LINC01096, FAM200B, HMX1, USP17L6P, USP17L9P, NA NA NA NA NA NA NA NA NA LTS-027 CPEB2-AS1, MSX1, LAP3, STX18, CYTL1, SH3TC1, DCAF16, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, NKX3-2, QDPR, AFAP1, S100P, DEFB131, CLRN2, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 WDR1, HS3ST1, FGFBP1) 0.207496786087373 170 0.069211868712115 0.753648418245477 6621 0.486219481147673 2 2 0 -6.90703791132586 LTS-027 NA NA NA NA LTS-027 chr4 17805040 17805120 81 * DCAF16 NA 0 NA 0.551 1 NA NA NA NA NA LTS-027 chr4 17805121 36068847 18263727 * c(MIR4275, SLIT2-IT1, LOC100505912, SLC34A2, PPARGC1A, ARAP2, PACRGL, DHX15, ADGRA3, SEL1L3, LCORL, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, PCDH7, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, STIM2, GBA3, NCAPG, SOD3, MIR573, KCNIP4, CCKAR, CCDC149, SLIT2) 0.23386152011186 41 0.087766562608975 0.674590215718042 3113 0.432700294833028 2 2 0 -6.85406596560823 LTS-027 chr4 36068848 37450981 1382134 * c(MIR4801, ARAP2, DTHD1, NWD2) 0.205540979753295 6 0.0652462004002277 0.490731731024662 493 0.321269637749732 2 2 0 -7.66168271895762 LTS-027 chr4 37450982 37450987 6 * NWD2 NA 0 NA 0.741 1 NA NA NA NA NA LTS-027 chr4 37450988 42062275 4611288 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, SLC30A9, PTTG2, LIAS, KLB, SMIM14, LIMCH1, TBC1D1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.206973726164166 72 0.0796458072756402 0.70667944657828 3613 0.535028748872655 2 2 0 -6.74935039890548 LTS-027 chr4 42062276 42065001 2726 * SLC30A9 NA 0 NA 0.41 1 NA NA NA NA NA LTS-027 chr4 42065002 48988450 6923449 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.22969202971266 87 0.0829229279235101 0.592117004194096 3394 0.365086611307371 2 2 0 -7.55651913593789 LTS-027 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.525826682063199 89 0.323591477531393 1 NA NA -5.76498374934522 LTS-027 chr4 52709193 53463164 753972 * c(SPATA18, DCUN1D4, LRRC66, SGCB, USP46) 0.227 1 NA 0.68092809745748 503 0.413770410506874 2 2 0 -5.76739913720588 LTS-027 chr4 53463165 62445314 8982150 * c(ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, PAICS, NMU, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, ADGRL3, IGFBP7-AS1, CHIC2, IGFBP7, KDR, KIT, RPL21P44, PDGFRA, POLR2B, PPAT, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, CLOCK, CEP135) 0.233834161084052 38 0.0656363586661186 0.704534978652246 2840 0.387381205103921 2 2 0 -6.75926837538355 LTS-027 chr4 62445315 66509180 4063866 * c(EPHA5, ADGRL3, TECRL, LOC401134) 0.27136945085093 3 0.0166232768530556 0.512300792654975 523 0.293700807150636 1 1 0 -8.56445881713148 LTS-027 chr4 66509181 66535248 26068 * EPHA5 NA 0 NA 2.026 1 NA NA NA NA NA LTS-027 chr4 66535249 68411367 1876119 * c(EPHA5-AS1, CENPC, EPHA5) NA 0 NA 1.00316310158482 174 0.427999755814584 4 NA NA -5.81472846153303 LTS-027 chr4 68411368 68904637 493270 * c(STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.212903959849184 18 0.0794364340767102 0.59855028277464 549 0.280630757177253 2 2 0 -6.83565664719837 LTS-027 chr4 68904638 68904713 76 * UBA6-AS1 NA 0 NA 0.414 1 NA NA NA NA NA LTS-027 chr4 68904714 68928658 23945 * c(TMPRSS11F, SYT14P1, UBA6-AS1, LOC550113) 0.206800676092162 4 0.00822597511950204 0.322188422965379 100 0.16233466460782 7 6 1 -7.97085917227455 LTS-027 chr4 68928659 69363240 434582 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.240248655820018 9 0.0994377247884882 0.676333716939786 355 0.431958160611072 2 2 0 -6.7598932027201 LTS-027 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.153841508413963 39 0.105856751423149 0 NA NA -7.21527690053253 LTS-027 chr4 69434317 69512310 77994 * character(0) NA 0 NA 2.076 1 NA NA NA NA NA LTS-027 chr4 69512311 71532361 2020051 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, UGT2A1, CSN1S1, CSN2, CSN3, AMBN, FDCSP, SMR3A, SULT1B1, CSN1S2AP, HTN1, HTN3, JCHAIN, PRR27, AMTN, MUC7, UGT2B28, ODAM, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, CABS1) 0.248551917350967 19 0.103934836760336 0.48869745306374 1196 0.409996386280915 1 1 0 -6.91729451636299 LTS-027 chr4 71532362 71554128 21767 * character(0) NA 0 NA 1.089 1 NA NA NA NA NA LTS-027 chr4 71554129 71896325 342197 * c(DCK, RUFY3, GRSF1, UTP3, MOB1B) 0.24571842009847 2 0.021920310216783 0.754561510688883 527 0.433787163306801 6 5 1 -7.31986915488675 LTS-027 chr4 71896326 72102211 205886 * c(DCK, SLC4A4) NA 0 NA 0.501 1 NA NA NA NA NA LTS-027 chr4 72102212 73616040 1513829 * c(NPFFR2, GC, SLC4A4, ADAMTS3) 0.158594219444274 2 0.0403050865276332 0.481439232420304 441 0.218898196612748 2 2 0 -9.82697826851177 LTS-027 chr4 73616041 73921750 305710 * COX18 NA 0 NA 0.56 1 NA NA NA NA NA LTS-027 chr4 73921751 77661711 3739961 * c(FAM47E, MIR4450, FAM47E-STBD1, PPBPP2, THAP6, C4orf26, RASSF6, AFM, AFP, EREG, ALB, EPGN, PARM1, RCHY1, ANKRD17, NAAA, COX18, CXCL1, CXCL2, CXCL3, CCDC158, CXCL8, CXCL10, AREG, ART3, CXCL9, MTHFD2L, LOC441025, PF4, PF4V1, NUP54, PPEF2, PPBP, SDAD1, SHROOM3, CXCL6, CXCL11, CXCL5, BTC, LOC728040, USO1, STBD1, CDKL2, SCARB2, G3BP2) 0.227632631960875 87 0.0772709867908115 0.650043943057591 3210 0.394028095206047 2 2 0 -6.82999046841095 LTS-027 chr4 77661712 78106410 444699 * c(CCNI, SOWAHB, SEPT11, SHROOM3, CCNG2) 0.169920635434725 10 0.0414569388375188 0.798840608833914 638 0.38962785553534 3 3 0 -6.76001673383308 LTS-027 chr4 78106411 82126294 4019884 * c(LINC01094, LINC01088, LINC00989, CXCL13, PCAT4, ANTXR2, PAQR3, FGF5, CNOT6L, C4orf22, GK2, ANXA3, BMP2K, PRKG2, PRDM8, MRPL1, BMP3, FRAS1, NAA11) 0.236591171157102 31 0.0962333856628199 0.589565793858522 2008 0.364908404087505 2 2 0 -7.274219084304 LTS-027 chr4 82126295 82347515 221221 * PRKG2 NA 0 NA 0.721 1 NA NA NA NA NA LTS-027 chr4 82347516 88084345 5736830 * c(THAP9-AS1, LOC100506746, MIR4451, CDS1, HPSE, HELQ, LIN54, C4orf36, RASGEF1B, SEC31A, WDFY3, COQ2, HNRNPD, SLC10A6, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, PLAC8, MAPK10, KLHL8, PTPN13, ENOPH1, MIR575, THAP9, SCD5, ARHGAP24, FAM175A, GPAT3, HNRNPDL) 0.235482240480911 39 0.0897958097540899 0.722990078360716 3096 0.416235017637591 2 2 0 -6.76433821585143 LTS-027 chr4 88084346 114303535 26219190 * c(MIR1243, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, STPG2-AS1, FAM13A, SEC24B, PDLIM5, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, SLC9B2, SLC9B1, PPM1K, TIGD2, SGMS2, DMP1, DSPP, EGF, EIF4E, ENPEP, MMRN1, METAP1, NPNT, LOC256880, NAP1L5, PPA2, DAPP1, DKK2, HPGDS, RPL34-AS1, FAM13A-AS1, GPRIN3, STPG2, ANK2, GRID2, NA NA NA NA NA NA NA NA NA LTS-027 H2AFZ, HADH, IBSP, CFI, LRIT3, HSD17B13, PCNAP1, CCSER1, MANBA, MIR302B, MTTP, ATOH1, NFKB1, CISD2, HSD17B11, LEF1, HERC5, LARP7, PDHA2, EMCN, PITX2, PKD2, NUDT9, GAR1, TET2, ARHGEF38, HERC6, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, SMARCAD1, MEPE, INTS12, KLHL8, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, ETNPPL, BMPR1B, SNCA, SPP1, TACR3, UBE2D3, ELOVL6, GSTCD, DNAJB14, ALPK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CXXC4, PLA2G12A, CASP6, SPARCL1, C4orf17, COL25A1, UNC5C, LAMTOR3, HERC3, FLJ20021, PAPSS1, AIMP1, TIFA, TRMT10A, TBCK, ABCG2) 0.228250758366077 194 0.0951093300028844 0.638233399669193 11313 0.396950274834493 2 2 0 -7.57533206081802 LTS-027 NA NA NA NA LTS-027 chr4 114303536 114372504 68969 * c(ANK2, CAMK2D) 0.421 1 NA 0.894161060611649 39 0.343507261737502 3 3 0 -5.76443298795156 LTS-027 chr4 114372505 115763994 1391490 * c(NDST4, MIR577, UGT8, ARSJ, CAMK2D) 0.308341318425191 11 0.103610196058461 0.699127359321216 431 0.549112770058777 1 1 0 -7.0064388620943 LTS-027 chr4 115763995 115766922 2928 * NDST4 NA 0 NA 0.469 1 NA NA NA NA NA LTS-027 chr4 115766923 119388948 3622026 * c(SNHG8, MIR1973, TRAM1L1, NDST4, SNORA24, PRSS12, NDST3) 0.288 1 NA 0.449748805605318 393 0.263319273316348 1 1 0 -6.18423722199616 LTS-027 chr4 119388949 119399800 10852 * character(0) NA 0 NA 0.254 1 NA NA NA NA NA LTS-027 chr4 119399801 119476651 76851 * CEP170P1 NA 0 NA 0.200011689606434 159 0.136113310493602 0 NA NA -6.20699950699119 LTS-027 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.329 1 NA NA NA NA NA LTS-027 chr4 119476981 146059495 26582515 * c(SCOC-AS1, PP12613, MIR2054, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, PLK4, PRDM5, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, MGAT4D, SPATA5, BBS12, FREM3, SYNPO2, ELF2, FABP2, FGF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, LINC01091, GYPA, GYPB, GYPE, ANXA5, IL2, IL15, LINC01061, C4orf3, MAD2L1, MGST2, GUSBP5, NDUFC1, MYOZ2, EXOSC9, PCDH18, USP53, OTUD4, LARP1B, NA NA NA NA NA NA NA NA NA LTS-027 BBS7, MAML3, ANKRD50, RNF150, PCDH10, METTL14, IL21, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, LOC645513, HHIP-AS1, TRPC3, CETN4P, UCP1, NDNF, FAT4, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, PDE5A, INPP4B, CCNA2, SEC24D) 0.302103364537054 165 0.0918216832113229 0.449541011947961 8653 0.328655391488998 1 1 0 -8.34876010628595 LTS-027 NA NA NA NA LTS-027 chr4 146059496 154512297 8452802 * c(MIR3140, LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, ANXA2P1, PRSS48, SMAD1, NR3C2, GATB, DKFZP434I0714, POU4F2, OTUD4, FBXW7, TMEM184C, RPS3A, C4orf51, FAM160A1, ARHGAP10, TTC29, MND1, SLC10A7, FHDC1, SNORD73A, PRMT9, LRBA) 0.305106136040936 42 0.0876388064437762 0.517798094560479 3322 0.279984462377366 1 1 0 -6.76141018087952 LTS-027 chr4 154512298 167932518 13420221 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, KLHL2, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, KIAA0922, ANP32C, GK3P, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, LOC340017, TRIM61, NPY1R, NPY2R, NPY5R, SPOCK3, FAM198B, ASIC5, PLRG1, DCHS2, PPID, MARCH1, TMEM144, TMA16, PDGFC, FSTL5, FNIP2, RXFP1, MSMO1, SFRP2, MIR578, TDO2, TLL1, TLR2, MAP9, TKTL2, LRAT, NAF1, NA NA NA NA NA NA NA NA NA LTS-027 RAPGEF2) 0.305126448125373 95 0.0975735723220048 0.441221656058762 4612 0.296420371197639 1 1 0 -8.12537738038309 LTS-027 NA NA NA NA LTS-027 chr4 167932519 167983627 51109 * SPOCK3 NA 0 NA 0.797 1 NA NA NA NA NA LTS-027 chr4 167983628 175240936 7257309 * c(LOC100506085, LOC100506122, ANXA10, SCRG1, CLCN3, PALLD, FBXO8, HMGB2, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, HPF1, DDX60, SH3RF1, HAND2-AS1, CEP44, CBR4, SAP30, DDX60L, HAND2, MFAP3L) 0.319004920362533 32 0.106743923110254 0.508380002481636 2123 0.371349680768067 1 1 0 -6.74294251622606 LTS-027 chr4 175240937 177056434 1815498 * c(MIR4276, ADAM29, WDR17, GPM6A, HPGD, GLRA3, CEP44) 0.277129222839041 5 0.0979908158961849 0.354899824323004 586 0.234961877454508 0 0 0 -8.24609805265311 LTS-027 chr4 177056435 177058611 2177 * WDR17 NA 0 NA 0.577 1 NA NA NA NA NA LTS-027 chr4 177058612 190878661 13820050 * c(CLDN24, MIR1305, MIR3945, LINC01093, WDR17, ZFP42, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, LINC01098, SLC25A4, LOC339975, TRIML1, ANKRD37, ING2, IRF2, KLKB1, LOC389247, HELT, LINC01060, FAM92A1P2, C4orf47, MTNR1A, CLDN22, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, FLJ38576, NA NA NA NA NA NA NA NA NA LTS-027 TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, WWC2, CASP3, SNX25, SORBS2, LOC90768) 0.306294593330345 106 0.101296366265077 0.479141009848046 4431 0.288796606277366 1 1 0 -7.0357695587249 LTS-027 NA NA NA NA LTS-027 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.60489786229975 49 0.988432898272693 2 NA NA -5.76587061734199 LTS-027 chr5 140347 163205 22859 * PLEKHG4B 0.161 1 NA 1.07197924518397 73 0.45678750775941 4 4 0 -5.76444966027615 LTS-027 chr5 163206 825338 662133 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3, ZDHHC11) 0.174877859744506 102 0.07241284132272 0.976170212700541 1245 0.583895345040658 3 3 0 -6.74139354911331 LTS-027 chr5 825339 833821 8483 * ZDHHC11 NA 0 NA 0.151 1 NA NA NA NA NA LTS-027 chr5 833822 840867 7046 * ZDHHC11 0.167 1 NA 0.436825428284062 50 0.260153129160971 1 1 0 -5.76579752938486 LTS-027 chr5 840868 843710 2843 * ZDHHC11 NA 0 NA 1.446 1 NA NA NA NA NA LTS-027 chr5 843711 1223583 379873 * c(LOC100506688, MIR4635, SLC12A7, SLC6A19, BRD9, ZDHHC11, NKD2, TRIP13) 0.14291200059658 20 0.0346082968452121 1.15387318767271 590 0.686884089492901 4 4 0 -6.73582246120684 LTS-027 chr5 1223584 11023148 9799565 * c(SNORD123, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4457, MIR4636, MARCH6, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, CCT5, ICE1, LINC01018, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, NSUN2, MRPL36, ANKRD33B, SLC6A3, SRD5A1, TERT, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, LPCAT1, NA NA NA NA NA NA NA NA NA LTS-027 CLPTM1L, ROPN1L, MED10, SEMA5A) 0.172103466306615 81 0.0553422962397335 0.895657737047661 3198 0.539796056695193 3 3 0 -6.73386029116281 LTS-027 NA NA NA NA LTS-027 chr5 11023149 11082727 59579 * CTNND2 NA 0 NA 0.725 1 NA NA NA NA NA LTS-027 chr5 11082728 14293251 3210524 * c(CTNND2, DNAH5, LINC01194, TRIO) 0.185411803467019 14 0.0724135331289655 0.720137388576836 619 0.350036426149355 2 2 0 -6.87533251137169 LTS-027 chr5 14293252 14297115 3864 * TRIO NA 0 NA 2.591 1 NA NA NA NA NA LTS-027 chr5 14297116 19473263 5176148 * c(LOC100130744, MIR4637, CDH18, BASP1, FBXL7, LOC285696, LOC401177, MARCH11, MYO10, FAM134B, FAM105A, ANKH, TRIO, OTULIN, ZNF622) 0.169685325298111 20 0.0680421695869941 0.988594516599433 1506 0.474456358787765 3 3 0 -6.84905388560525 LTS-027 chr5 19473264 23527777 4054514 * c(CDH12, CDH18, PMCHL1, PRDM9, GUSBP1) 0.0903591861941036 4 0.0799682228554985 0.645062062893389 262 0.423204061336962 2 2 0 -8.1043362186726 LTS-027 chr5 23527778 26886200 3358423 * c(CDH9, CDH10, LOC340107, PRDM9) 0.312 1 NA 0.612085572300353 167 0.415978129038183 2 2 0 -5.98507558478343 LTS-027 chr5 26886201 31299784 4413584 * c(CDH6, CDH9, LINC01021, LSP1P3) 0.312997848928018 3 0.0245560583156174 0.74068118908616 84 0.254311857649042 1 1 0 -10.0453603569564 LTS-027 chr5 31299785 31302195 2411 * CDH6 NA 0 NA 1.409 1 NA NA NA NA NA LTS-027 chr5 31302196 32594732 1292537 * c(CDH6, MIR4279, SUB1, PDZD2, DROSHA, ZFR, MTMR12, C5orf22, GOLPH3) 0.425648578659357 12 0.0434057669677729 1.31674148794923 1189 0.752183841741485 6 3 3 -6.75704776568341 LTS-027 chr5 32594733 32599162 4430 * SUB1 NA 0 NA 0.968 1 NA NA NA NA NA LTS-027 chr5 32599163 32790616 191454 * c(SUB1, NPR3) 0.353084106280013 7 0.0488496234815143 0.851074616341642 257 0.373388442168657 3 2 1 -7.00089874569263 LTS-027 chr5 32790617 33441124 650508 * c(LOC340113, NPR3, TARS) 0.228 1 NA 0.895769260570476 33 0.232983831861979 3 3 0 -5.764693303471 LTS-027 chr5 33441125 34880452 1439328 * c(C1QTNF3, TTC23L, AMACR, RAI14, SLC45A2, RXFP3, TARS, ADAMTS12) 0.202184232326954 19 0.0572934377716672 0.889720863131693 902 0.454645755730202 3 3 0 -6.89625083803817 LTS-027 chr5 34880453 34880656 204 * TTC23L NA 0 NA 2.491 1 NA NA NA NA NA LTS-027 chr5 34880657 34949857 69201 * c(DNAJC21, TTC23L, BRIX1, RAD1) NA 0 NA 1.32935361872805 215 0.724484666529606 5 NA NA -5.76446191157879 LTS-027 chr5 34949858 34950299 442 * DNAJC21 NA 0 NA 0.886 1 NA NA NA NA NA LTS-027 chr5 34950300 40767786 5817487 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, DAB2, UGT3A2, RANBP3L, TTC33, RICTOR, FYB, NIPBL, GDNF, IL7R, LIFR, WDR70, PRKAA1, PRLR, PTGER4, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, MIR580, C9, SPEF2, OSMR, LMBRD2, NUP155) 0.16783661592018 44 0.0917827514690557 0.839559318245385 4210 0.523832836588707 3 3 0 -6.79783143178856 LTS-027 chr5 40767787 40768495 709 * PRKAA1 NA 0 NA 4.734 1 NA NA NA NA NA LTS-027 chr5 40768496 41475766 707271 * c(LOC100506548, MROH2B, PLCXD3, PRKAA1, RPL37, SNORD72, C6, C7, CARD6) 0.146685594012363 30 0.0628571085236509 1.07024083671766 910 0.624254862692849 4 4 0 -6.73849338917761 LTS-027 chr5 41475767 42719891 1244125 * c(FBXO4, GHR, C5orf51, PLCXD3, OXCT1) NA 0 NA 1.07359129939955 416 0.625228018123519 4 NA NA -5.76542185179039 LTS-027 chr5 42719892 42721296 1405 * GHR 0.49 1 NA 1.45813407187263 27 0.558096140458167 6 6 0 -5.76441164120396 LTS-027 chr5 42721297 43352105 630809 * c(CCDC152, LOC100132356, LOC100506639, LOC153684, NIM1K, GHR, HMGCS1, ANXA2R, SELENOP, LOC648987, ZNF131) 0.447481301105417 7 0.0328778402720188 1.55710704026496 416 0.871062245580299 6 3 3 -6.92878972715875 LTS-027 chr5 43352106 43379529 27424 * CCL28 NA 0 NA 3.733 1 NA NA NA NA NA LTS-027 chr5 43379530 43444860 65331 * c(CCL28, TMEM267) NA 0 NA 3.34319777839457 72 3.13808674974795 15 NA NA -5.76441221663152 LTS-027 chr5 43444861 45259773 1814913 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, HCN1, C5orf34, TMEM267) 0.386984096739431 8 0.162144060725552 1.42281628208031 495 0.869821278900529 6 4 2 -6.74642829792057 LTS-027 chr5 45259774 45696278 436505 * HCN1 NA 0 NA 1.50929022477253 114 0.76009250779136 6 NA NA -5.7644637985611 LTS-027 chr5 49692017 49724095 32079 * EMB NA 0 NA 0.344457186337847 93 0.190536962384194 0 NA NA -5.77034441656993 LTS-027 chr5 49724096 49736893 12798 * EMB NA 0 NA 0.666 1 NA NA NA NA NA LTS-027 chr5 49736894 49737223 330 * EMB 0.208 1 NA 0.562645026138693 5 0.108191034748726 1 1 0 -5.76459272332079 LTS-027 chr5 49737224 54462479 4725256 * c(FST, ESM1, SNX18, EMB, CDC20B, LOC257396, GZMA, GZMK, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, GPX8, PELO, ARL15, LOC642366, MIR581, PARP8, HSPB3) 0.209700683012715 41 0.0816211130624973 0.58160531551601 1545 0.374745698620508 2 2 0 -7.40322175204287 LTS-027 chr5 54462480 54711981 249502 * c(MIR449C, CCNO, CDC20B, SKIV2L2, MCIDAS, GPX8, DHX29, MIR449A, MIR449B) NA 0 NA 0.866711354886596 381 0.452816242617986 3 NA NA -5.76553482382718 LTS-027 chr5 54711982 54718654 6673 * SKIV2L2 NA 0 NA 0.384 1 NA NA NA NA NA LTS-027 chr5 54718655 67596672 12878018 * c(LRRC70, FAM159B, LOC100303749, MIR5687, IPO11-LRRC70, CWC27, PLK2, ADAMTS6, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MIER3, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, IPO11, PDE4D, PIK3R1, DDX4, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, CENPK, SMIM15, GPBP1, ANKRD55, ELOVL7, TRAPPC13, PLPP1, NDUFAF2 NA NA NA NA NA NA NA NA NA LTS-027 ) 0.228162888493527 76 0.0686997944275379 0.670317009229435 5524 0.427283440099026 2 2 0 -6.8426556164019 LTS-027 NA NA NA NA LTS-027 chr5 67596673 68809945 1213273 * c(OCLN, CDK7, MARVELD2, CCDC125, PIK3R1, RAD17, SLC30A5, CENPH, TAF9, CCNB1, MRPS36) 0.236517133574313 16 0.0835310072168812 0.807874646685804 785 0.547590197171285 2 2 0 -6.80159880926502 LTS-027 chr5 68809946 68830513 20568 * OCLN NA 0 NA 0.007 1 NA NA NA NA NA LTS-027 chr5 68830514 70388996 1558483 * c(GUSBP9, NA, OCLN, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.323195056662348 167 0.518244773642706 0 NA NA -5.77058585411207 LTS-027 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 1.305 1 NA NA NA NA NA LTS-027 chr5 70751404 82136073 11384670 * c(CKMT2-AS1, NCRUPAR, MTRNR2L2, MIR4804, MIR3977, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, CKMT2, JMY, TMEM171, TMEM174, POC5, ACOT12, CRHBP, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, ARSB, MAP1B, CRSP8P, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, RASGRF2, NA NA NA NA NA NA NA NA NA LTS-027 RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.218051060521016 146 0.0778673669159322 0.705304162693677 7607 0.556457809352131 2 2 0 -6.73348876994799 LTS-027 NA NA NA NA LTS-027 chr5 82136074 82348624 212551 * character(0) NA 0 NA 0.476 1 NA NA NA NA NA LTS-027 chr5 82348625 83476378 1127754 * c(EDIL3, HAPLN1, VCAN, TMEM167A, SCARNA18, XRCC4) 0.247544223679593 27 0.0729978924880185 0.52122740822067 688 0.263528986499717 1 1 0 -7.09577700478341 LTS-027 chr5 83476379 83525645 49267 * EDIL3 NA 0 NA 1.373 1 NA NA NA NA NA LTS-027 chr5 83525646 122135564 38609919 * c(ARRDC3-AS1, LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, MIR2277, MIR4280, MIR3607, MIR3660, STARD4-AS1, LOC100505841, TMEM161B-AS1, LINC01023, EDIL3, NREP-AS1, CDO1, POLR3G, CETN3, CHD1, EPB41L4A-AS1, LYSMD3, AP3S1, SLCO6A1, ZNF474, POU5F2, STARD4, WDR36, COX7C, MGC32805, MBLAC2, TMEM161B, SRFBP1, ARSK, FAM81B, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LINC01554, LVRN, FER, RHOBTB3, ELL2, PPIP5K2, TNFAIP8, NA NA NA NA NA NA NA NA NA LTS-027 GLRX, KIAA0825, GPR150, DTWD2, NBPF22P, RGMB, RFESD, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, LNPEP, LOX, MIR9-2, MAN2A1, MCC, MEF2C, NR2F1-AS1, RGMB-AS1, PAM, TMED7, PCSK1, PRR16, COMMD10, ERAP1, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, ARRDC3, RASA1, EPB41L4A, ERAP2, TMEM232, ARL14EPL, LINC00461, FBXL17, YTHDC2, SNORA13, SNX2, SRP19, MIR583, NR2F1, LINC00992, ST8SIA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 REEP5, MCTP1, CAMK4, CAST, NUDT12, SPATA9, TSSK1B, FAM172A, ADGRV1, SLF1, TSLP, CCNH, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, FTMT, SNCAIP, TTC37, PJA2) 0.239386654846754 260 0.0952205031668297 0.66725487044968 11673 0.396978547551284 2 2 0 -7.15723563342165 LTS-027 NA NA NA NA LTS-027 chr5 122135565 122137537 1973 * SNX2 NA 0 NA 2.527 1 NA NA NA NA NA LTS-027 chr5 122137538 140166025 18028488 * c(SRA1, VTRNA2-1, MIR874, KIAA1024L, MIR1289-2, MIR3936, MIR3661, LINC01024, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, KIF20A, APBB3, SEC24A, BRD8, HNRNPA0, KIF3A, SLC35A4, MARCH3, LEAP2, PRRC1, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, CSNK1G3, CTNNA1, CEP120, SLC25A48, ZMAT2, ADAMTS19, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FBN2, FSTL4, SEPT8, ACSL6, JADE2, HARS2, LRRTM2, FBXL21, KLHL3, GDF9, GFRA3, NA NA NA NA NA NA NA NA NA LTS-027 SNORD63, SNORA74A, PKD2L2, UQCRQ, AFF4, SLC27A6, SNX24, HARS, HINT1, HSPA4, HSPA9, CHSY3, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, TEX43, LOC389332, PROB1, LECT2, LMNB1, C5orf63, ANKHD1-EIF4EBP3, SMAD5, C5orf56, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, ALDH7A1, ISOC1, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, CXXC5, RAPGEF6, KDM3B, PHAX, PFDN1, PITX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PPIC, ZCCHC10, WDR55, ANKHD1, PPP2CA, LOC553103, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, C5orf15, CDC42SE2, TRPC7, ZNF608, PURA, CTXN3, ECSCR, SIL1, LINC01184, CCNI2, SKP1, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, SPOCK1, TCF7, TGFBI, SNHG4, MEIKIN, UBE2B, UBE2D2, VDAC1, WNT8A, TXNDC15, CAMLG, SLC4A9, NME5, PCBD2, PSD2, CYSTM1, MEGF10, PDLIM4, EIF4EBP3, CDC23, P4HA2, LYRM7, CDKN2AIPNL, CD14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PRDM6, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, FNIP1, MATR3, DDX46, CDC25C, SLC23A1) 0.22074165775203 219 0.0865966979896969 0.736292624779159 13058 0.490761242429471 2 2 0 -6.8208239125733 LTS-027 NA NA NA NA LTS-027 chr5 140166026 140166220 195 * PCDHA1 NA 0 NA 0.638 1 NA NA NA NA NA LTS-027 chr5 140166221 140553564 387344 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.177212451865677 37 0.0823706557271758 0.593378425383054 1176 0.389321351280519 2 2 0 -6.93592684871451 LTS-027 chr5 140553565 140558893 5329 * c(PCDHB8, PCDHB7) 0.307127717417513 2 0.17819090885901 0.235953489177045 70 0.130309140315211 1 1 0 -6.8412746886491 LTS-027 chr5 140558894 140871400 312507 * c(PCDHGA12, PCDHGC3, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.187217492131907 23 0.0570473764695217 0.614607146661231 1636 0.42560924610119 3 3 0 -6.92375583936031 LTS-027 chr5 140871401 141318978 447578 * c(LOC100505658, DIAPH1, PCDHGA12, RELL2, PCDH1, PCDHGC3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, ARAP3, LOC729080, PCDHGB4, HDAC3, FCHSD1, PCDHGA8, KIAA0141) 0.218639621973159 18 0.04753852926528 0.819984803010234 934 0.403994083890929 2 2 0 -6.77144942341898 LTS-027 chr5 141318979 147506704 6187726 * c(GNPDA1, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DPYSL3, STK32A, FGF1, ARHGAP26, NR3C1, C5orf46, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, HMHB1, GRXCR2, SPINK1, NDFIP1, YIPF5, SPRY4, RNF14, KIAA0141, JAKMIP2) 0.208380259142544 55 0.0825072509822407 0.676694444464459 2939 1.78819685404267 2 2 0 -6.74691628724995 LTS-027 chr5 147506705 147510795 4091 * SPINK5 NA 0 NA 0.412 1 NA NA NA NA NA LTS-027 chr5 147510796 148207886 697091 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.182178557874191 2 0.0700035713374682 0.465074682593467 434 0.265451403773953 2 2 0 -7.78328746661586 LTS-027 chr5 148207887 150274837 2066951 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, ADRB2, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, IRGM, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, SMIM3, ZNF300, MYOZ3, CD74) 0.22405891644189 55 0.0550804309356224 0.795936923212976 3675 0.401587868200539 2 2 0 -6.84924902902471 LTS-027 chr5 150274838 150311841 37004 * c(ZNF300P1, ZNF300) 0.222 2 0.0777817459305202 0.428730367032585 77 0.154438934482005 2 2 0 -6.95430894940576 LTS-027 chr5 150311842 150321685 9844 * ZNF300P1 NA 0 NA 0.995 1 NA NA NA NA NA LTS-027 chr5 150321686 150846874 525189 * c(TNIP1, ZNF300P1, SLC36A2, SLC36A1, CCDC69, GM2A, SLC36A3, GPX3, ANXA6) 0.144952619535392 22 0.0414307172156641 1.17959625879341 741 0.68590157866127 4 4 0 -6.74157824377961 LTS-027 chr5 150846875 150847335 461 * SLC36A1 NA 0 NA 0.556 1 NA NA NA NA NA LTS-027 chr5 150847336 156822762 5975427 * c(MIR3141, LOC100652758, G3BP1, FAXDC2, FAM114A2, PPP1R2P3, FAM71B, SLC36A1, FAT2, LARP1, GEMIN5, HAVCR1, CYFIP2, GLRA1, KIF4B, GRIA1, MRPL22, ITK, SAP30L-AS1, FNDC9, MFAP3, ATOX1, GALNT10, NMUR2, SGCD, SPARC, SAP30L, HAVCR2, ADAM19, TIMD4, CNOT8, HAND1, MED7) 0.228211739715192 58 0.0820261806581876 0.678027819671859 3476 0.380737761151639 2 2 0 -6.77425662336122 LTS-027 chr5 156822763 156886998 64236 * ADAM19 NA 0 NA 1.015 1 NA NA NA NA NA LTS-027 chr5 156886999 159797753 2910755 * c(C5orf52, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, LOC285626, LOC285627, NIPAL4, IL12B, THG1L, TTC1, CCNJL, ADAM19, CLINT1) 0.17382514985071 7 0.0906290187943081 0.795070889571471 1468 0.47312357150293 3 3 0 -6.8537692807636 LTS-027 chr5 159797754 159820165 22412 * ZBED8 NA 0 NA 0.499 1 NA NA NA NA NA LTS-027 chr5 159820166 167303152 7482987 * c(MIR3142, SLU7, NUDCD2, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, MIR146A, TENM2, ZBED8, CCNG1, PTTG1) 0.22499744645394 18 0.092490540056808 0.588420230724542 1180 0.36060437257043 2 2 0 -7.68238906384668 LTS-027 chr5 167303153 169413019 2109867 * c(FAM196B, MIR103B1, DOCK2, WWC1, FBLL1, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, SLIT3, MIR585, PANK3) 0.217686680996864 27 0.0601850659652556 0.836403441147359 1360 0.410944451242489 2 2 0 -6.94796182146554 LTS-027 chr5 169413020 169422997 9978 * DOCK2 NA 0 NA 1.071 1 NA NA NA NA NA LTS-027 chr5 169422998 169690037 267040 * c(MIR378E, C5orf58, DOCK2, FOXI1, LCP2) 0.0819099680844612 4 0.0453238347892144 1.18468624313215 349 0.505819334535369 7 7 0 -6.83922368915747 LTS-027 chr5 169690038 169693784 3747 * LCP2 NA 0 NA 2.154 1 NA NA NA NA NA LTS-027 chr5 169693785 170884664 1190880 * c(MIR3912, GABRP, LINC01366, TLX3, KCNIP1, KCNMB1, LCP2, NPM1, RANBP17, FGF18) 0.0975487500371618 8 0.0526577561781195 1.68523669029628 642 1.10898828593747 7 7 0 -6.7403017179974 LTS-027 chr5 170884665 171200634 315970 * character(0) NA 0 NA 0.418 1 NA NA NA NA NA LTS-027 chr5 171200635 175386669 4186035 * c(LOC100268168, MIR4634, CPLX2, C5orf47, NKX2-5, CREBRF, DRD1, DUSP1, FBXW11, EFCAB9, SH3PXD2B, LOC285593, HRH2, FLJ16171, MSX2, RPL26L1, HMP19, NEURL1B, ERGIC1, BNIP1, SNORA74B, STK10, CPEB4, THOC3, STC2, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.209779950638428 22 0.0357380137627377 0.795055551844452 2300 0.473951515289134 2 2 0 -6.94265809200265 LTS-027 chr5 175386670 175392068 5399 * THOC3 NA 0 NA 0.175720435545415 60 0.148199613439876 0 NA NA -5.81148473900916 LTS-027 chr5 175392069 175723359 331291 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) NA 0 NA 0.528982033807393 135 0.510866751955124 1 NA NA -5.76577647826276 LTS-027 chr5 175723360 175740061 16702 * SIMC1 NA 0 NA 0.731 1 NA NA NA NA NA LTS-027 chr5 175740062 177151082 1411021 * c(MIR4281, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, FAM153A, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.213616234787766 30 0.0843211976184879 0.781070654143077 3149 0.445122541014403 2 2 0 -6.78203897508651 LTS-027 chr5 177151083 177151228 146 * FAM153A NA 0 NA 0.275 1 NA NA NA NA NA LTS-027 chr5 177151229 177348048 196820 * c(FAM153A, LOC728554) NA 0 NA 0.330874773587737 143 0.243080245418251 0 NA NA -5.77300417244867 LTS-027 chr5 177348049 180631817 3283769 * c(MIR1229, HEIH, BTNL3, MGAT4B, ZNF354B, OR2Y1, BTNL9, TBC1D9B, N4BP3, FLT4, RASGEF1C, OR2V1, OR2V2, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, TRIM7, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.206652656840801 121 0.0755710865242607 0.775315733422452 4097 0.460689576781402 2 2 0 -6.83656884454 LTS-027 chr5 180631818 180688111 56294 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.745110239102912 253 0.410481628525319 2 NA NA -5.76504847184296 LTS-027 chr6 203389 311938 108550 * DUSP22 0.441 1 NA 1.14876292766835 25 0.492556467152075 4 4 0 -5.76494543744095 LTS-027 chr6 311939 11102923 10790985 * c(SCARNA27, TFAP2A-AS1, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, MIR5689, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GCNT2, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, C6orf52, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, ERVFRD-1, MAK, NA NA NA NA NA NA NA NA NA LTS-027 NQO2, SLC35B3, NRN1, TMEM14C, SERPINB6, SERPINB9, ELOVL2, PAK1IP1, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, RIPK1, PRPF4B, GCM2, FOXQ1, CDYL, LY86, EEF1E1) 0.263014566136121 211 0.0637625355073521 1.34520123746255 5388 0.886102125496137 5 4 1 -6.75585062476216 LTS-027 NA NA NA NA LTS-027 chr6 11102924 12297198 1194275 * c(TMEM170B, EDN1, SMIM13, HIVEP1, ERVFRD-1, NEDD9, ADTRP) 0.293817044523719 18 0.0603218221062844 1.12389034110887 927 0.597749475628447 4 3 1 -6.84688932360649 LTS-027 chr6 12297199 21231497 8934299 * c(LOC100130357, RANBP9, MIR4639, CAP2, MBOAT1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, MYLIP, ID4, JARID2, NHLRC1, STMND1, TBC1D7, NOL7, FAM8A1, GFOD1, CDKAL1, ATXN1, MCUR1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, CD83, NUP153) 0.268474920533882 45 0.0893697178279447 1.43245697379326 3159 0.776760466209275 5 4 1 -6.82188822834916 LTS-027 chr6 21231498 21598067 366570 * c(CDKAL1, SOX4) 0.248443392834913 2 0.0763675323681471 2.46635942844715 104 1.35299928919038 10 8 2 -6.73974316412827 LTS-027 chr6 21598068 26600330 5002263 * c(SLC17A4, SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, HDGFL1, HIST1H2AA, HIST1H2BA, GPLD1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, KAAG1, HIST1H2APS1, CASC15, HCG11, GMNN, DCDC2, TDP2, BTN2A3P, CARMIL1, ACOT13, PRL, MRS2, SLC17A1, SOX4, BTN1A1, NBAT1, ALDH5A1, C6orf62, HIST1H2AC, HIST1H2AB, NA NA NA NA NA NA NA NA NA LTS-027 HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, CMAHP, HIST1H3F, FAM65B, KIAA0319) 0.28150011921592 113 0.062160796341182 1.24309178813937 3380 0.7572295481144 5 4 1 -6.75670451687869 LTS-027 NA NA NA NA LTS-027 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.334 1 NA NA NA NA NA LTS-027 chr6 26636496 26638875 2380 * ZNF322 NA 0 NA 0.487236988337858 56 0.407997812812447 1 NA NA -5.7644237474841 LTS-027 chr6 26638876 29011960 2373085 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-027 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.261100540665334 50 0.0889601057112865 1.17032691460554 2012 0.647563577340756 5 4 1 -6.77664606565593 LTS-027 NA NA NA NA LTS-027 chr6 29011961 29012042 82 * character(0) NA 0 NA 0.6 1 NA NA NA NA NA LTS-027 chr6 29012043 29408313 396271 * character(0) 0.232231075538724 24 0.061109310469739 0.853061601006 366 0.547613678382446 2 2 0 -6.78566499806329 LTS-027 chr6 29408314 29429392 21079 * character(0) 0.254 1 NA 0.72745322932486 17 0.311610109422203 2 2 0 -5.76454728971463 LTS-027 chr6 29429393 29430797 1405 * character(0) NA 0 NA 0.687280532186488 26 0.265637381521386 2 NA NA -5.76441721649314 LTS-027 chr6 29430798 30313268 882471 * character(0) 0.320610962848507 108 0.0605000529222898 1.23435363249981 1396 1.25940863399965 4 3 1 -6.73758326784575 LTS-027 chr6 30313269 30313366 98 * character(0) NA 0 NA 1.714 1 NA NA NA NA NA LTS-027 chr6 30313367 30978561 665195 * character(0) 0.286946295420629 24 0.102601513888314 1.53826855642534 1953 0.833944802896937 8 6 2 -6.75787472776063 LTS-027 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.762 1 NA NA NA NA NA LTS-027 chr6 30993285 30997692 4408 * character(0) 0.254614481626472 7 0.0380807412893034 0.57465797896247 87 0.163656253020265 5 4 1 -6.91694137236213 LTS-027 chr6 30997693 30997784 92 * character(0) NA 0 NA 0.964 1 NA NA NA NA NA LTS-027 chr6 30997785 32412809 1415025 * character(0) 0.307970651467964 269 0.0663183172946115 1.47396025797249 5506 3.12349595297186 4 3 1 -6.76094565965105 LTS-027 chr6 32412810 32486491 73682 * HLA-DRB5 0.49 1 NA 1.69883122494641 34 1.43319477245531 7 7 0 -5.76441070076003 LTS-027 chr6 32486492 32610495 124004 * c(HLA-DQA1, HLA-DRB5) 0.34967441493285 83 0.0835662629630684 1.92640551864587 255 3.99888915352617 12 8 4 -6.73382432973529 LTS-027 chr6 32610496 32610535 40 * HLA-DQA1 NA 0 NA 0.816 1 NA NA NA NA NA LTS-027 chr6 32610536 32610925 390 * HLA-DQA1 0.294791431122923 9 0.0452465468295648 0.434947957797403 39 0.18927047601361 8 6 2 -6.75122508034484 LTS-027 chr6 32610926 32610934 9 * HLA-DQA1 NA 0 NA 0.889 1 NA NA NA NA NA LTS-027 chr6 32610935 32714210 103276 * HLA-DQA1 0.389860313031656 89 0.0606867806213668 1.17058818502705 197 1.37666524023579 3 2 1 -6.73733882731761 LTS-027 chr6 32714211 32723917 9707 * character(0) 0.253 1 NA 0.7701020605953 6 0.688659470759436 2 2 0 -5.76450832975436 LTS-027 chr6 32723918 32790124 66207 * character(0) 0.247486490288922 12 0.0438354360597161 1.03324198039896 123 0.466159536476467 6 5 1 -6.79915487947926 LTS-027 chr6 32790125 32793211 3087 * character(0) NA 0 NA 1.895 1 NA NA NA NA NA LTS-027 chr6 32793212 43487767 10694556 * c(LOC100131047, TOMM6, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4641, MIR4462, MIR5690, CDKN1A, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, NUDT3, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, IP6K3, CLPS, TAF8, MAPK14, CCDC167, PTCRA, DNAH8, FANCE, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, CUL9, ANKS1A, NA NA NA NA NA NA NA NA NA LTS-027 UBR2, DAAM2, GLTSCR1L, MTCH1, ZNF318, SPDEF, YIPF3, USP49, MDGA1, BRPF3, GNMT, GLO1, GLP1R, LOC285847, PNPLA1, TREML4, RPL7L1, GRM4, GUCA1A, GUCA1B, PRICKLE4, PACSIN1, HMGA1, CLPSL1, TREML1, TREML3P, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, LINC00951, CRIP3, MDFI, MEA1, MLN, MOCS1, C6orf226, ATP6V0CP3, GGNBP1, RPL10A, NFYA, DEF6, MRPL2, ETV7, PPIL1, PEX6, PGC, PIM1, TREM2, TREM1, PPARD, UHRF1BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 MRPS10, PPP2R5D, TBC1D22B, SAYSD1, TRERF1, MAPK13, LRFN2, PTK7, CPNE5, BAK1, PRPH2, ZFAND3, RPS10, SRSF3, C6orf132, C6orf106, DLK2, SNRPC, SRF, SRPK1, TAF11, TBCC, TCP11, TEAD3, BYSL, TULP1, TDRG1, ZNF76, TFEB, TREML2, KCNK16, UQCC2, TTBK1, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, POLR1C, CUL7) 0.269650385219169 258 0.0719016055045299 1.45961854394654 14917 1.6453849447861 5 4 1 -6.76696490775703 LTS-027 NA NA NA NA LTS-027 chr6 43487768 43738977 251210 * c(RSPH9, POLH, GTPBP2, MRPS18A, XPO5, VEGFA, POLR1C, MAD2L1BP) 0.383 1 NA 1.42300911684093 565 0.884794864186868 6 6 0 -5.76485342580222 LTS-027 chr6 43738978 43752836 13859 * VEGFA 0.366859201134188 2 0.0417193000900063 1.41414190138778 52 1.13105852445689 6 4 2 -6.73332561316147 LTS-027 chr6 43752837 44796545 1043709 * c(LINC01512, MIR4647, MIR4642, CAPN11, TCTE1, SLC29A1, SPATS1, C6orf223, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, TMEM63B, AARS2, MRPL14, VEGFA, SUPT3H, CDC5L) 0.366081493234693 18 0.103970725517839 1.01655105207939 1160 0.499323384802925 3 2 1 -6.79168749988672 LTS-027 chr6 44796546 46987821 2191276 * c(ANKRD66, RCAN2, ADGRF5, TDRD6, ENPP4, ADGRF1, MEP1A, CYP39A1, CLIC5, ENPP5, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27) 0.36580620974048 12 0.0812094187700521 0.452585529676759 1302 0.258656442726195 1 1 0 -7.29115379332571 LTS-027 chr6 46987822 57075254 10087433 * c(MIR5685, MLIP-IT1, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, OPN5, ADGRF4, FAM83B, ADGRF2, ICK, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, ADGRF1, TNFRSF21, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, PTCHD4, MIR133B, MUT, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, LRRC1, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, NA NA NA NA NA NA NA NA NA LTS-027 DST, TFAP2B, CRISP2, LOC730101, GSTA7P, COL21A1, TFAP2D, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.387809971386078 114 0.0785858456358136 0.745334391126749 5685 0.40302151284616 2 1 1 -7.00684451087547 LTS-027 NA NA NA NA LTS-027 chr6 57075255 57183190 107936 * c(RAB23, PRIM2) NA 0 NA 1.202 1 NA NA NA NA NA LTS-027 chr6 57183191 57512678 329488 * PRIM2 0.343943123582939 38 0.0719991109475693 1.04305288466587 116 0.705479440525731 4 3 1 -6.79852868893343 LTS-027 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.10534006736882 19 0.474636388990969 4 NA NA -5.76450332403642 LTS-027 chr6 62390154 63921853 1531700 * KHDRBS2 0.392 1 NA 0.699978290176223 89 0.475171594455869 2 2 0 -5.7645590682201 LTS-027 chr6 63921854 70409116 6487263 * c(PHF3, EYS, LOC441155, SLC25A51P1, LGSN, LMBRD1, ADGRB3, PTP4A1) 0.381861459345667 21 0.0806361610953205 0.66157987984132 1050 0.363263637920274 2 1 1 -7.03974416210412 LTS-027 chr6 70409117 70410603 1487 * LMBRD1 NA 0 NA 1.014 1 NA NA NA NA NA LTS-027 chr6 70410604 74213864 3803261 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, RIMS1, MTO1, DPPA5, NA, MIR30A, MIR30C2, OOEP, DDX43, LMBRD1, KCNQ5, FAM135A, SMAP1, OGFRL1, LINC00472, KHDC1) 0.331506849899166 40 0.135700535210478 0.808595241136537 1986 0.593296847016568 3 2 1 -6.9048348999441 LTS-027 chr6 74213865 74214085 221 * character(0) NA 0 NA 1.593 1 NA NA NA NA NA LTS-027 chr6 74214086 74217995 3910 * character(0) NA 0 NA 2.02444330372481 48 0.818677743820455 9 NA NA -5.76441312605866 LTS-027 chr6 74217996 90647904 16429909 * c(HMGN3-AS1, LOC100506804, SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, RWDD2A, CNR1, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PM20D2, SRSF12, CFAP206, PRSS35, LCA5, EEF1A1, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, ORC3, GABRR1, GABRR2, IBTK, SENP6, SLC17A5, SNORD50A, FILIP1, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, ME1, MYO6, NT5E, CYB5R4, UBE2J1, PGM3, PHIP, AKIRIN2, FAM46A, TMEM30A, RARS2, SMIM8, LYRM2, NA NA NA NA NA NA NA NA NA LTS-027 SNX14, RRAGD, BCKDHB, BACH2, RNY4, LINC01590, ELOVL4, SNORD50B, TPBG, TTK, SPACA1, SH3BGRL2, GJA10, RNGTT, LINC01621, UBE3D, TBX18, HMGN3, SNAP91, CASP8AP2) 0.381712051330798 104 0.0969196901784502 0.850858640562077 7671 0.47668926036981 3 2 1 -6.8754911045241 LTS-027 NA NA NA NA LTS-027 chr6 90647905 106989293 16341389 * c(LIN28B-AS1, TSTD3, MIR2113, MIR4464, MIR4643, FUT9, ASCC3, BVES, KLHL32, BVES-AS1, AIM1, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, LIN28B, COQ3, POU3F2, PREP, HACE1, PRDM13, BACH2, PRDM1, POPDC3, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5, ATG5) 0.398102891846023 70 0.0645825582669047 0.768671325653664 3609 0.443447948691769 2 1 1 -7.22238881882911 LTS-027 chr6 106989294 106989349 56 * AIM1 NA 0 NA 0.946 1 NA NA NA NA NA LTS-027 chr6 106989350 108985415 1996066 * c(LOC100422737, SEC63, AIM1, FOXO3, LACE1, SCML4, OSTM1, C6orf203, SOBP, QRSL1, PDSS2, BEND3, NR2E1, RTN4IP1, SNX3) 0.367837385120113 9 0.154175855582009 0.983643865521602 1357 0.550234172533117 3 2 1 -6.77161228829234 LTS-027 chr6 108985416 117073493 8088078 * c(TRAPPC3L, LOC100996634, TRAF3IP2, GTF3C6, SLC16A10, COL10A1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, FOXO3, CDK19, TSPYL4, FRK, FYN, FAM26E, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DSE, HDAC2, RSPH4A, KPNA5, LINC00222, LAMA4, MARCKS, FAM26F, GSTM2P1, RFPL4B, TUBE1, CDC40, RWDD1, REV3L, FAM229B, TRAF3IP2-AS1, MICAL1, SMPD2, TSPYL1, TPI1P3, METTL24, ARMC2, RPF2, DDO, NA NA NA NA NA NA NA NA NA LTS-027 SLC22A16, CD164, WISP3, WASF1, MFSD4B, ZBTB24, FIG4) 0.395641561475235 100 0.067774357506018 0.856483014916509 5019 0.536423820710674 3 2 1 -6.78819255204281 LTS-027 NA NA NA NA LTS-027 chr6 117073494 131179371 14105878 * c(LOC100287632, SMLR1, MIR5695, TRDN, SMPDL3A, TMEM200A, NUS1, CLVS2, NCOA7, HINT3, SAMD3, RNF217, NKAIN2, EPB41L2, FABP7, FAM162B, TBC1D32, GPRC6A, RFX6, SLC35F1, HEY2, BRD7P3, VGLL2, TMEM244, MCM9, ASF1A, GJA1, DCBLD1, LOC285762, HSF2, C6orf58, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, MAN1A1, HDDC2, PLN, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, TRMT11, ROS1, LOC643623, MIR548B, TPD52L1, RNF217-AS1, FAM184A, NA NA NA NA NA NA NA NA NA LTS-027 RNF146, L3MBTL3, RSPO3, ARHGAP18, KIAA0408) 0.369976898051279 101 0.107444086310826 0.773232319519474 5293 0.524091922800815 2 1 1 -7.1634481832535 LTS-027 NA NA NA NA LTS-027 chr6 131179372 131184740 5369 * EPB41L2 NA 0 NA 1.047 1 NA NA NA NA NA LTS-027 chr6 131184741 132644074 1459334 * c(LINC01013, CTGF, EPB41L2, MOXD1, ARG1, ENPP1, ENPP3, CTAGE9, OR2A4, MED23, AKAP7) 0.299875860444675 16 0.0670387947385691 1.18676811383546 895 0.691486466919806 4 3 1 -6.79868962264344 LTS-027 chr6 132644075 132644996 922 * MOXD1 NA 0 NA 2.005 1 NA NA NA NA NA LTS-027 chr6 132644997 134582367 1937371 * c(SLC18B1, TAAR1, LINC01312, SLC2A12, EYA4, MOXD1, LINC00326, TAAR6, HMGA1P7, VNN3, SNORA33, RPS12, SGK1, TCF21, TAAR8, STX7, VNN2, VNN1, TAAR5, TAAR2, TAAR3, TBPL1) 0.34897452194748 20 0.0532248458008693 0.769776951567362 1222 0.408868367906654 3 2 1 -7.18277031116881 LTS-027 chr6 134582368 135360930 778563 * c(MIR3662, HBS1L, LINC01010, SGK1, ALDH8A1) NA 0 NA 0.512859222309841 311 0.641817577445149 1 NA NA -5.76455769069278 LTS-027 chr6 135360931 135363099 2169 * HBS1L NA 0 NA 1.368 1 NA NA NA NA NA LTS-027 chr6 135363100 144904602 9541503 * c(LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, MIR4465, CITED2, HBS1L, MTFR2, IL22RA2, ADAT2, LOC153910, ZC2HC1B, OLIG3, TXLNB, HEBP2, FUCA2, CCDC28A, PDE7B, PHACTR2-AS1, HIVEP2, SLC35D3, IFNGR1, ECT2L, MAP3K5, FLJ46906, MYB, NMBR, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, AHI1, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, PERP, LINC01625, TNFAIP3, UTRN, SF3B5, LTV1, NA NA NA NA NA NA NA NA NA LTS-027 REPS1, PEX3, STX11, MAP7, PHACTR2, BCLAF1) 0.355434796716242 50 0.109506827668974 0.859460325178015 4598 0.517741971433543 3 2 1 -6.82839808665062 LTS-027 NA NA NA NA LTS-027 chr6 144904603 147885957 2981355 * c(LOC100507557, RAB32, STXBP5, SHPRH, GRM1, SAMD5, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, FBXO30) 0.389203347759043 37 0.0737220145915413 0.720287127684009 1231 0.456609049469433 2 1 1 -6.90267091312362 LTS-027 chr6 147885958 147885992 35 * SAMD5 0.196 1 NA 2.358 1 NA NA NA NA NA LTS-027 chr6 147885993 152638123 4752131 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, RAET1L, ESR1, TAB2, SASH1, SYNE1, MTHFD1L, ZC3H12D, NUP43, RAET1G, SUMO4, SAMD5, IYD, PCMT1, RMND1, PLEKHG1, ZBTB2, RPS18P9, RAET1K, ULBP3, ARMT1, CCDC170, ULBP2, ULBP1, PPP1R14C, LRP11, PPIL4, LATS1, AKAP12) 0.383725540993893 97 0.0775164071979586 0.985538855695328 3247 0.805106546591352 3 2 1 -6.76850596846027 LTS-027 chr6 152638124 152639244 1121 * SYNE1 NA 0 NA 0.629 1 NA NA NA NA NA LTS-027 chr6 152639245 155777067 3137823 * c(CNKSR3, SCAF8, SYNE1, IPCEF1, TIAM2, FBXO5, RGS17, CLDN20, OPRM1, NOX3, TFB1M, MTRF1L, VIP, MYCT1) 0.399532926316861 47 0.0590629182069684 0.806606733728426 1776 0.483111391121267 3 2 1 -6.86103747188468 LTS-027 chr6 155777068 156267850 490783 * character(0) NA 0 NA 2.077 1 NA NA NA NA NA LTS-027 chr6 156267851 159398342 3130492 * c(C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, OSTCP1, GTF2H5, SNX9, TULP4, ARID1B, TMEM181, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, SERAC1, SYNJ2, SYTL3) 0.3964306480589 19 0.0595373979477266 1.06281748731427 1783 1.89650946759355 3 2 1 -6.76452591560804 LTS-027 chr6 159398343 167590641 8192299 * c(LOC100129518, AIRN, LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, PNLDC1, C6orf118, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, MAS1, MAP3K4, LINC00602, PARK2, MPC1, PLG, AGPAT4, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, LOC729603, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, RNASET2, LINC00473, QKI, WTAP NA NA NA NA NA NA NA NA NA LTS-027 ) 0.376114739985998 92 0.0709630925990962 0.882427693629825 3871 0.631127178552744 3 2 1 -6.75092116853556 LTS-027 NA NA NA NA LTS-027 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.315 1 NA NA NA NA NA LTS-027 chr6 167591885 167622096 30212 * TCP10L2 0.083 1 NA 0.493429019762868 154 0.450444674285466 1 1 0 -5.7644763038093 LTS-027 chr6 167622097 167622109 13 * character(0) NA 0 NA 0.646 1 NA NA NA NA NA LTS-027 chr6 167622110 167785925 163816 * c(UNC93A, TCP10, TTLL2) 0.382949524170025 8 0.0643583716388163 0.81334322700113 152 0.543580878516089 3 2 1 -6.73815807495654 LTS-027 chr6 167785926 167794761 8836 * TCP10 0.346941412759683 5 0.105125163495711 0.392534830142179 130 0.49786540031184 6 4 2 -6.79053517395789 LTS-027 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.028 1 NA NA NA NA NA LTS-027 chr6 167796265 170064462 2268198 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.361460680761625 29 0.0851085803156753 1.07677673188587 1122 0.561155230951432 4 3 1 -6.87242793357341 LTS-027 chr6 170064463 170065475 1013 * WDR27 NA 0 NA 0.825 1 NA NA NA NA NA LTS-027 chr6 170065476 170598352 532877 * c(LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, LINC00574) 0.333 1 NA 0.868812154018137 377 0.484403095973 3 3 0 -5.76625799755512 LTS-027 chr6 170598353 170893599 295247 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.849267696431069 325 1.00029096028264 3 NA NA -5.7650386226611 LTS-027 chr7 193047 227931 34885 * FAM20C 0.444 1 NA 1.00792231394414 39 0.495811104980377 4 4 0 -5.76504180048468 LTS-027 chr7 227932 4897716 4669785 * c(WI2-2373I1.2, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19, AP5Z1) 0.374245241827726 165 0.0710565403678406 1.16773994618516 4332 0.679637624931124 5 3 2 -6.95694319307793 LTS-027 chr7 4897717 4946910 49194 * c(MMD2, RADIL, PAPOLB) 0.408459023432637 6 0.0638260657307551 0.702616686270601 129 0.281476680183995 2 1 1 -6.7912383648522 LTS-027 chr7 4946911 4947000 90 * MMD2 NA 0 NA 1.85 1 NA NA NA NA NA LTS-027 chr7 4947001 5760860 813860 * c(RBAK-RBAKDN, RNF216-IT1, MMD2, SLC29A4, WIPI2, RBAKDN, RNF216P1, RNF216, RBAK, ACTB, ZNF890P, FSCN1, MIR589, FBXL18, TNRC18) 0.376684108956901 48 0.0795119420978397 1.30381636300778 1044 0.743595917313372 6 4 2 -6.76008037896697 LTS-027 chr7 5760861 5938351 177491 * c(ZNF815P, CCZ1, RNF216, OCM) 0.346589916359124 5 0.0936867119713356 0.836505604841472 126 0.455052923766644 4 3 1 -6.81814602725706 LTS-027 chr7 5938352 5939901 1550 * CCZ1 NA 0 NA 0.276 1 NA NA NA NA NA LTS-027 chr7 5939902 6017391 77490 * c(RSPH10B, CCZ1, PMS2) 0.30376437407929 6 0.0486401754382801 0.521753097445414 135 0.457652554561337 1 1 0 -6.73391154247691 LTS-027 chr7 6017392 6018170 779 * PMS2 NA 0 NA 2.305 1 NA NA NA NA NA LTS-027 chr7 6018171 6791201 773031 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.337098024861225 23 0.124823464273355 1.04620658354475 1328 0.68945218257579 4 3 1 -6.74630511560537 LTS-027 chr7 6791202 6797238 6037 * c(PMS2CL, RSPH10B2) NA 0 NA 0.263 1 NA NA NA NA NA LTS-027 chr7 6797239 6840712 43474 * c(CCZ1B, RSPH10B2) NA 0 NA 0.346637181765241 71 0.223022387016784 0 NA NA -5.77100003725439 LTS-027 chr7 6840713 6844536 3824 * CCZ1B NA 0 NA 0.695 1 NA NA NA NA NA LTS-027 chr7 6844537 23214595 16370059 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, LOC100506178, KLHL7-AS1, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, IL6, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TOMM7, TMEM106B, CDCA7L, KLHL7, C1GALT1, ANKMY2, RPA3, SP4, SNORD93, TWIST1, UMAD1, ISPD, NA NA NA NA NA NA NA NA NA LTS-027 FAM126A, SCIN, DNAH11, PHF14, HDAC9, RAPGEF5) 0.375832145606405 146 0.0771784236003683 0.786144259680227 5527 0.485545334483085 3 2 1 -7.43726568113655 LTS-027 NA NA NA NA LTS-027 chr7 23214596 31378155 8163560 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, ADCYAP1R1, CLK2P1, C7orf31, CRHR2, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, RPS2P32, OSBPL3, GARS, GHRHR, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, NA NA NA NA NA NA NA NA NA LTS-027 HOXA10, HOXA11, HOXA13, FAM221A, AQP1, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, FKBP14, KLHL7, STK31, NEUROD6, NPVF, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.383256293169017 123 0.0819971084227007 0.971377093169171 5061 0.583060578261572 3 2 1 -6.81330765103823 LTS-027 NA NA NA NA LTS-027 chr7 31378156 39874090 8495935 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, PPP1R17, POU6F2, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, NEUROD6, HERPUD2, SFRP4, LOC646999, MIR550A2, EEPD1, STARD3NL, NA NA NA NA NA NA NA NA NA LTS-027 ELMO1, SEPT7) 0.38846320529331 98 0.0691262204756491 0.841031483848623 3854 0.441330845209825 3 2 1 -6.85685391977142 LTS-027 NA NA NA NA LTS-027 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.326 1 NA NA NA NA NA LTS-027 chr7 39892331 39990097 97767 * CDK13 NA 0 NA 0.419365923941101 40 0.281032363087535 1 NA NA -5.79106148905001 LTS-027 chr7 39990098 48260940 8270843 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, C7orf57, MPLKIP, ABCA13, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, SUN3, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, INHBA, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, NA NA NA NA NA NA NA NA NA LTS-027 UPP1, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.389192422473995 159 0.0708107613295469 0.990324812792031 5397 0.580785368455495 3 2 1 -6.86149303156868 LTS-027 NA NA NA NA LTS-027 chr7 48260941 50515038 2254098 * c(C7orf72, IKZF1, ZPBP, ABCA13, CDC14C, VWC2, FIGNL1) 0.346239337931059 28 0.109897234343736 0.68171841204607 962 0.447052118149013 2 1 1 -7.05832279079389 LTS-027 chr7 50515039 50530852 15814 * c(DDC, FIGNL1) NA 0 NA 3.164 1 NA NA NA NA NA LTS-027 chr7 50530853 55538381 5007529 * c(DDC-AS1, EGFR-AS1, DDC, EGFR, VSTM2A, COBL, SEC61G, POM121L12, VSTM2A-OT1, GRB10, HPVC1, LINC01446, LANCL2, VOPP1) 0.394339753849811 28 0.0722644595662496 0.845361098191818 1205 0.433072982409841 3 2 1 -6.80576812671439 LTS-027 chr7 55538382 55540401 2020 * VOPP1 NA 0 NA 0.348343198929319 55 0.216660978946325 0 NA NA -5.76476380149315 LTS-027 chr7 55540402 55540646 245 * VOPP1 NA 0 NA 0.626 1 NA NA NA NA NA LTS-027 chr7 55540647 57532512 1991866 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.42457114788156 23 0.0594427681702916 1.03308178639111 807 0.774053291486651 4 2 2 -6.74309498512259 LTS-027 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 2.06842105878162 13 2.14880082240281 9 NA NA -5.76441014025857 LTS-027 chr7 62758725 63023528 264804 * ZNF733P 0.493 1 NA 1.2773749864999 7 0.687079984253584 5 5 0 -5.76447897117796 LTS-027 chr7 63023529 65422001 2398473 * c(LOC100128885, LINC01005, ZNF273, VKORC1L1, ZNF92, ZNF679, ERV3-1, ZNF680, LOC441242, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, CCT6P1, INTS4P2, YWHAEP1, SNORA22, ZNF736, ZNF735, ZNF138) 0.43277991433694 21 0.07559991811535 0.646935499186323 804 0.533898135889659 2 1 1 -6.7711409239939 LTS-027 chr7 65422002 65619527 197526 * c(CRCP, GUSB, ASL) 0.428381324937419 7 0.0489265727780878 1.10186301110282 246 0.495257199706333 4 2 2 -6.73303473133276 LTS-027 chr7 65619528 65705291 85764 * c(CRCP, TPST1) NA 0 NA 0.474 1 NA NA NA NA NA LTS-027 chr7 65705292 66660242 954951 * c(MIR4650-2, KCTD7, RABGEF1, LINC00174, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, GTF2IRD1P1, TPST1) 0.412829474523479 12 0.0600885079518437 0.725386902889823 490 0.335131896580543 2 1 1 -6.77769947586124 LTS-027 chr7 66660243 66660326 84 * c(PMS2P4, TYW1) NA 0 NA 0.357 1 NA NA NA NA NA LTS-027 chr7 66660327 66786524 126198 * c(PMS2P4, TYW1, STAG3L4) 0.440232349510724 11 0.0378295219011915 0.422283688002568 97 0.326679868149685 0 0 0 -6.85781829638912 LTS-027 chr7 69063868 71248332 2184465 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.459258018818408 13 0.0460172765772785 0.96963847443434 403 0.645999746101163 4 2 2 -7.03938164130811 LTS-027 chr7 71248333 72850319 1601987 * c(MIR4650-1, TRIM50, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, FZD9, CALN1, FKBP6, POM121) 0.471 1 NA 0.624336740073778 668 0.526130416095367 2 2 0 -5.81433524067927 LTS-027 chr7 72850320 74210670 1360351 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, GTF2IRD2, DNAJC30, BAZ1B, BCL7B, GTF2IRD1) 0.417791465654324 17 0.12030683810207 0.950692595599515 1698 0.506849941954706 3 2 1 -6.78288017213099 LTS-027 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.684 1 NA NA NA NA NA LTS-027 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.346864290533204 4 0.116831787911795 0.553074868273068 223 0.408203628745393 1 1 0 -6.83025347072329 LTS-027 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.582 1 NA NA NA NA NA LTS-027 chr7 75048588 76633638 1585051 * c(POM121C, LOC100133091, MIR4651, CCL26, DTX2, SSC4D, SRRM3, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A) 0.431928767762414 44 0.062761987896622 0.94106846006451 1255 0.502514668003952 4 2 2 -6.82376945319186 LTS-027 chr7 76633639 76634125 487 * DTX2P1-UPK3BP1-PMS2P11 NA 0 NA 0.455 1 NA NA NA NA NA LTS-027 chr7 76634126 78119199 1485074 * c(PMS2P9, APTR, MIR548AU, FGL2, RSBN1L, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, TMEM60, MAGI2) 0.431588984026025 22 0.111533166305576 0.676783587657655 948 0.386867673010305 2 1 1 -6.74290007255372 LTS-027 chr7 78119200 79848294 1729095 * c(MIR548M, MAGI2-AS3, MAGI2-AS2, GNAI1, MAGI2) 0.167 1 NA 0.707704039686297 101 0.345198200780048 2 2 0 -5.7646215245104 LTS-027 chr7 79848295 80551644 703350 * c(SEMA3C, GNAI1, GNAT3, CD36) NA 0 NA 0.598585330200749 259 0.348944439950457 2 NA NA -5.85459401374931 LTS-027 chr7 80551645 80804743 253099 * SEMA3C NA 0 NA 1.238 1 NA NA NA NA NA LTS-027 chr7 80804744 81626575 821832 * c(HGF, CACNA2D1) 0.170922096943386 5 0.0175584737377712 1.76246513928215 414 0.854045136530995 9 8 1 -6.75917255501469 LTS-027 chr7 81626576 81630852 4277 * CACNA2D1 NA 0 NA 3.134 1 NA NA NA NA NA LTS-027 chr7 81630853 84625583 2994731 * c(SEMA3A, SEMA3D, PCLO, CACNA2D1, SEMA3E) 0.106296726861744 13 0.0443069132766272 2.42425162573443 935 1.33652879670875 14 13 1 -6.8104961067271 LTS-027 chr7 84625584 87564277 2938694 * c(DBF4, TP53TG1, RUNDC3B, KIAA1324L, SEMA3D, GRM3, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, TMEM243, DMTF1) 0.186087732562728 21 0.0661922524598936 1.36318786598725 1391 0.772466391819372 7 6 1 -6.93409018848805 LTS-027 chr7 87564278 87744008 179731 * ADAM22 NA 0 NA 1.20679290713671 29 0.496474710263307 5 NA NA -5.76662360515816 LTS-027 chr7 87744009 87745936 1928 * ADAM22 NA 0 NA 0.254 1 NA NA NA NA NA LTS-027 chr7 87745937 87780704 34768 * ADAM22 0.454 1 NA 0.656567838447085 83 0.296399956436784 2 2 0 -5.76557579393199 LTS-027 chr7 87780705 89861955 2081251 * c(C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, ADAM22, SRI, STEAP4) 0.444123300260678 10 0.0490656023435292 0.530140523971651 747 0.321892806269632 2 1 1 -7.63553384185793 LTS-027 chr7 89861956 89862032 77 * STEAP2 NA 0 NA 0.667 1 NA NA NA NA NA LTS-027 chr7 89862033 97845404 7983372 * c(LOC100506136, MIR4652, LOC101409256, AKAP9, SLC25A13, CDK6, BET1, COL1A2, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, SAMD9L, LMTK2, PEG10, HEPACAM2, FAM133B, TECPR1, STEAP2, GNG11, GNGT1, DLX6-AS1, MGC72080, LRRD1, C7orf76, ASNS, OCM2, PDK4, ASB4, PEX1, CDK14, PON1, PON2, PON3, ANKIB1, SAMD9, PPP1R9A, VPS50, SDHAF3, MIR489, GATAD1, CASD1, TAC1, MIR591, MIR653, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, FZD1, NA NA NA NA NA NA NA NA NA LTS-027 RBM48, NA, GTPBP10, KRIT1, SGCE, CLDN12) 0.429603331752186 95 0.0639806766741488 0.678508596809705 5181 0.427784392169004 2 1 1 -6.76923720467698 LTS-027 NA NA NA NA LTS-027 chr7 97845405 99055790 1210386 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, TMEM130, BRI3, TECPR1, PTCD1, KPNA7, NPTX2, BAIAP2L1, SMURF1, TRRAP, MYH16, BUD31, ATP5J2) 0.441410605929558 40 0.0411077383693892 0.954780119257377 1560 0.473758899830997 4 2 2 -6.85524460945896 LTS-027 chr7 99055791 99565959 510169 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.437850341799478 26 0.0466259089414393 0.646231579965614 1098 0.324579725124383 2 1 1 -6.77877724678454 LTS-027 chr7 99565960 100549979 984020 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPHB4, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, SPDYE3, PCOLCE, ACTL6B, SRRT, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, SLC12A9, MOSPD3, GIGYF1, AZGP1P1, TAF6, TFR2, TRIP6, ZAN, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.423838014613863 36 0.0626936365470377 0.897088426486377 3291 0.500816355419512 4 2 2 -6.83138090008465 LTS-027 chr7 100549980 100550079 100 * character(0) 0.371 1 NA 0.628314411843951 3 0.538574352650898 2 2 0 -5.76441279871277 LTS-027 chr7 100550080 100616288 66209 * MUC12 0.3629591759868 131 0.0915013619387232 1.0686251075412 287 0.703504255854857 6 4 2 -6.74263774714631 LTS-027 chr7 100616289 100674948 58660 * c(MUC12, MUC17) NA 0 NA 0.779358567314144 126 0.384077849664849 2 NA NA -5.7668609639695 LTS-027 chr7 100674949 100681211 6263 * MUC17 0.452 1 NA 0.294366351992397 88 0.0940993355607682 0 0 0 -5.76552628497239 LTS-027 chr7 100681212 100687097 5886 * MUC17 NA 0 NA 0.342188359102761 85 0.106866630669729 0 NA NA -5.76745380205993 LTS-027 chr7 100687098 102109449 1422352 * c(LOC100289561, MIR4285, MIR4653, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.436000142728216 32 0.0900034945558119 0.973799703628842 1703 0.632219468838763 4 2 2 -6.76814862314011 LTS-027 chr7 102109450 102109980 531 * LRWD1 NA 0 NA 0.47 1 NA NA NA NA NA LTS-027 chr7 102109981 112720652 10610672 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SPDYE2B, MIR4467, NAMPT, RASA4, LRRC17, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, POLR2J2, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, DNAJB9, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, LRRN3, POLR2J3, PRKAR2B, NA NA NA NA NA NA NA NA NA LTS-027 KMT2E, BCAP29, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, CBLL1, ARMC10, IMMP2L, PMPCB, DOCK4) 0.421481022220621 96 0.0813477239569888 0.656374698805151 5629 0.401525180946792 2 1 1 -6.92682873944828 LTS-027 NA NA NA NA LTS-027 chr7 112720653 115890532 3169880 * c(MIR3666, TFEC, TES, MDFIC, LINC00998, GPR85, PPP1R3A, FOXP2) 0.407969073499922 17 0.0531524583018454 0.481952428520767 811 0.311472970252446 1 1 0 -8.4522973703975 LTS-027 chr7 115890533 120981147 5090615 * c(CFTR, ASZ1, TSPAN12, TES, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.415648100117076 19 0.0657812696639134 0.634947778059411 2000 0.386764741676788 2 1 1 -6.96696063258143 LTS-027 chr7 120981148 120988870 7723 * WNT16 NA 0 NA 0.346 1 NA NA NA NA NA LTS-027 chr7 120988871 120990581 1711 * FAM3C 0.431 1 NA 0.181906706050087 39 0.113368661636695 0 0 0 -5.78697166459764 LTS-027 chr7 120990582 120990680 99 * FAM3C NA 0 NA 0.589 1 NA NA NA NA NA LTS-027 chr7 120990681 121668783 678103 * c(FAM3C, PTPRZ1) 0.367960064693952 3 0.0308598984660244 0.657886935829476 228 0.493997148633498 3 2 1 -7.09850647059259 LTS-027 chr7 121668784 121671448 2665 * PTPRZ1 NA 0 NA 0.789 1 NA NA NA NA NA LTS-027 chr7 121671449 121942847 271399 * c(AASS, FEZF1, PTPRZ1) 0.487 1 NA 1.04244735155692 233 0.455373559748652 4 4 0 -5.76657029351947 LTS-027 chr7 121942848 121944527 1680 * c(FEZF1-AS1, FEZF1) 0.328 1 NA 0.934377011214818 33 0.306110657848571 3 3 0 -5.76442400711342 LTS-027 chr7 121944528 127031685 5087158 * c(ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, SLC13A1, SPAM1, MIR592, TMEM229A, WASL, CADPS2) 0.305137618450058 27 0.078226459189835 0.909117972976985 1435 0.577169997209581 4 3 1 -7.06686858857974 LTS-027 chr7 127031686 127220668 188983 * ZNF800 NA 0 NA 1.079 1 NA NA NA NA NA LTS-027 chr7 127220669 131084187 3863519 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, MGC27345, KLHDC10, FLNC, AHCYL2, TNPO3, COPG2, SND1, SND1-IT1, TPI1P2, HILPDA, FSCN3, MESTIT1, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, MIR335, NRF1, PAX4, CPA4, ZC3HC1, RBM28, METTL2B, STRIP2, OPN1SW, LRRC4, NA, CCDC136, NA NA NA NA NA NA NA NA NA LTS-027 SMO, MIR593, UBE2H, GCC1, CALU, FAM71F1, TMEM209, ATP6V1F, CPA5, CEP41) 0.316935250075801 81 0.0840243534655795 1.22891236051827 4142 0.67720394380657 4 3 1 -6.79680467815265 LTS-027 NA NA NA NA LTS-027 chr7 131084188 131096039 11852 * MKLN1 NA 0 NA 2.236 1 NA NA NA NA NA LTS-027 chr7 131096040 133164917 2068878 * c(FLJ40288, MKLN1, PODXL, CHCHD3, EXOC4, PLXNA4) 0.255325799117118 27 0.0567860231188311 1.5086210985604 906 1.52687317533912 5 4 1 -6.79520762281417 LTS-027 chr7 133164918 137308386 4143469 * c(CHRM2, LRGUK, AKR1B1, NUP205, SLC13A4, WDR91, AGBL3, STRA8, LOC349160, FAM180A, AKR1B15, CNOT4, TMEM140, AKR1B10, MIR490, PTN, EXOC4, C7orf73, BPGM, LUZP6, C7orf49, CALD1, SLC35B4, DGKI) 0.343361832300914 32 0.10277088517041 0.92729375084924 2101 0.541096341676951 3 2 1 -6.84272465112625 LTS-027 chr7 137308387 137330202 21816 * DGKI NA 0 NA 3.809 1 NA NA NA NA NA LTS-027 chr7 137330203 141443846 4113644 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, SVOPL, CLEC2L, FMC1, TMEM213, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, ATP6V0A4, LUC7L2, MRPS33, AGK, ZC3HAV1, KIAA1147, KIAA1549, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, TTC26, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.318196975025983 58 0.0556839479281624 1.22687191901873 3884 0.721876284865362 4 3 1 -6.79104322248844 LTS-027 chr7 141443847 142028595 584749 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, NA, MGAM, MGAM2) 0.284734577759863 23 0.0775429244892138 0.963255765247248 1013 0.452721326512783 4 3 1 -6.88557625760443 LTS-027 chr7 142028596 142031996 3401 * character(0) NA 0 NA 1.311 1 NA NA NA NA NA LTS-027 chr7 142031997 142499762 467766 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.334301802546662 45 0.0958440863532481 1.32477495521149 460 0.78987048767647 4 3 1 -6.76167534127681 LTS-027 chr7 142499763 142499789 27 * character(0) 0.225 1 NA 2.732 1 NA NA NA NA NA LTS-027 chr7 142499790 142984263 484474 * c(OR9A2, C7orf34, TMEM139, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.243427096522293 12 0.0344043469769314 1.18825169140762 704 0.59194446264494 6 5 1 -6.80435922690799 LTS-027 chr7 142984264 143295554 311291 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX, CASP2, FAM131B) 0.20977367111927 14 0.0498276700568741 1.89191608998335 662 1.1410517922871 7 6 1 -6.73529945692028 LTS-027 chr7 143295555 143321183 25629 * TCAF2 NA 0 NA 0.224421230439137 61 0.127404555511282 0 NA NA -5.86140890162205 LTS-027 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.542 1 NA NA NA NA NA LTS-027 chr7 143400289 143884193 483905 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.234588159425017 3 0.0365558932777375 0.78439466482816 298 0.718745286072736 2 2 0 -6.83260316264915 LTS-027 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.192 1 NA NA NA NA NA LTS-027 chr7 143928927 143982476 53550 * c(OR2A7, ARHGEF34P) 0.275 1 NA 0.222919471686138 83 0.254810778353678 0 0 0 -5.81759818565716 LTS-027 chr7 143982477 144074340 91864 * c(ARHGEF34P, ARHGEF5) 0.18850851169307 2 0.0770746391493337 0.589717111916932 74 0.622998333948161 3 3 0 -6.78602717102853 LTS-027 chr7 144074341 144703163 628823 * c(NOBOX, TPK1, ARHGEF5) 0.262017269405569 6 0.0325944780599414 1.37604351200064 200 0.946649945848451 5 4 1 -6.78777428685853 LTS-027 chr7 144703164 147815332 3112169 * c(MIR548I4, MIR548F4, MIR548AQ, CNTNAP2) NA 0 NA 1.00812499561277 136 0.426508997049617 4 NA NA -5.83927633959381 LTS-027 chr7 147815333 148112987 297655 * CNTNAP2 0.089 1 NA 1.68957322260936 59 0.676981382265821 7 7 0 -5.76441017861866 LTS-027 chr7 148112988 148544442 431455 * c(C7orf33, EZH2, CNTNAP2, CUL1) 0.0629799101580056 3 0.0145716619962629 1.76477210392053 402 0.861118485890645 11 11 0 -6.77350959089684 LTS-027 chr7 148544443 148638626 94184 * EZH2 NA 0 NA 3.369 1 NA NA NA NA NA LTS-027 chr7 148638627 149941516 1302890 * c(ZNF783, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, SSPO, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ZNF212, ZNF767P, ZNF282, KRBA1, PDIA4) 0.0655832358409109 39 0.0234012122366139 2.27848115331554 2019 1.26423982328271 10 10 0 -6.73934494351604 LTS-027 chr7 149941517 149945037 3521 * ACTR3C NA 0 NA 0.8277602164173 83 0.618726538571577 3 NA NA -5.76445021478081 LTS-027 chr7 149945038 149945050 13 * ACTR3C NA 0 NA 1.76 1 NA NA NA NA NA LTS-027 chr7 149945051 150553605 608555 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.0782734746487401 30 0.0303151265303598 1.77138676749018 884 1.08372240347927 8 8 0 -6.74419122505193 LTS-027 chr7 150553606 150554584 979 * AOC1 0.076 1 NA 1.17847174734513 21 0.232114390928677 4 4 0 -5.76446379168175 LTS-027 chr7 150554585 151042545 487961 * c(ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, AOC1, GBX1, ATG9B, KCNH2, NOS3, NUB1, CHPF2, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.101951687918201 31 0.0264392181817942 1.62436186491881 1538 0.841501355872263 6 6 0 -6.73908389437776 LTS-027 chr7 151042546 151046149 3604 * NUB1 NA 0 NA 2.341 1 NA NA NA NA NA LTS-027 chr7 151046150 151478485 432336 * c(WDR86-AS1, MIR3907, CRYGN, WDR86, PRKAG2, NUB1, RHEB) 0.124959597201081 9 0.0292052126245375 2.13193022222013 408 0.979493758102214 13 12 1 -6.7608191726387 LTS-027 chr7 151478486 151483466 4981 * PRKAG2 NA 0 NA 0.879 1 NA NA NA NA NA LTS-027 chr7 151483467 153584450 2100984 * c(LINC01003, PRKAG2-AS1, GALNTL5, DPP6, FABP5P3, PRKAG2, ACTR3B, KMT2C, GALNT11, XRCC2) 0.350006016649434 9 0.103755856595075 0.529980895095032 955 0.33770607223694 1 1 0 -6.86336142766741 LTS-027 chr7 153584451 156475551 2891101 * c(HTR5A-AS1, PAXIP1-AS2, C7orf13, RNF32, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, HTR5A, INSIG1, LMBR1, LINC00244, SHH) 0.100186934736678 37 0.0693188870951352 1.65383219092788 1561 0.984540891163308 7 7 0 -6.74274860278224 LTS-027 chr7 156475552 156480791 5240 * LMBR1 NA 0 NA 1.36795133475985 36 0.357181838666268 5 NA NA -5.76448252873842 LTS-027 chr7 156480792 156518192 37401 * LMBR1 0.4 1 NA 0.549565793019313 9 0.222635913544962 1 1 0 -5.76734494617732 LTS-027 chr7 156518193 157061642 543450 * c(MNX1, LMBR1, NOM1, MNX1-AS1, UBE3C) 0.425691783546184 28 0.0589670341047531 0.766264446018413 474 0.371811007129927 2 1 1 -6.75109462419229 LTS-027 chr7 157061643 157062086 444 * UBE3C NA 0 NA 1.3828378453403 9 0.676815234100941 5 NA NA -5.76441258839969 LTS-027 chr7 157062087 157151166 89080 * DNAJB6 NA 0 NA 0.176 1 NA NA NA NA NA LTS-027 chr7 157151167 157208617 57451 * DNAJB6 0.156 1 NA 0.497375392379359 53 0.280051796473925 1 1 0 -5.76457298244323 LTS-027 chr7 157208618 158937585 1728968 * c(DNAJB6, LOC100506585, MIR5707, LINC00689, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2) 0.299801044355743 23 0.0871092403987421 0.540272498225639 1038 0.842485685990707 1 1 0 -6.7414143675099 LTS-027 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.528 2 0 0 NA NA -Inf LTS-027 chr8 182757 182794 38 * ZNF596 0.359 1 NA 0.996 1 NA NA NA NA NA LTS-027 chr8 182795 7305471 7122677 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.284173413978147 104 0.0919894931007127 0.51998591125624 2365 0.289867732521337 1 1 0 -6.79703167509433 LTS-027 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.023 1 NA NA NA NA NA LTS-027 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.370678027323871 4 0.0960624796681826 0.211791445661095 111 0.200765888981525 0 0 0 -7.77371472629575 LTS-027 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.175 1 NA NA NA NA NA LTS-027 chr8 8175295 11619556 3444262 * c(MIR1322, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, TDH, PRSS55, C8orf74, GATA4, XKR6, MIR124-1, MSRA, PINX1, BLK, MTMR9, MIR597, MIR598, PPP1R3B, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TNKS, ERI1, MFHAS1, RP1L1) 0.274221096929348 46 0.0905837029844597 0.542192045741412 2293 0.312860198748196 1 1 0 -6.89678167926458 LTS-027 chr8 11619557 11708553 88997 * c(CTSB, FDFT1, NEIL2) 0.299377135971545 20 0.0847141322951862 0.760405448779362 283 0.418992672979523 1 1 0 -6.78563009296963 LTS-027 chr8 11708554 11710077 1524 * CTSB NA 0 NA 0.5 1 NA NA NA NA NA LTS-027 chr8 11710078 17424946 5714869 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, VPS37A, SGCZ, CTSB, C8orf48, DEFB109P1, DEFB130, FGF20, MICU3, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, ZDHHC2, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, SLC7A2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, MTMR7, LONRF1) 0.326224891947671 37 0.0942061425666994 0.475143447524005 1490 0.281083696780764 1 1 0 -6.93999312920554 LTS-027 chr8 17424947 24157598 6732652 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, ADAM28, LZTS1, NKX2-6, PEBP4, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, GFRA2, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, ASAH1, NKX3-1, PCM1, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, NA NA NA NA NA NA NA NA NA LTS-027 STC1, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, CHMP7, ENTPD4, PHYHIP) 0.300895850684793 163 0.0817539313687807 0.575875019099476 5601 0.354871469257588 1 1 0 -7.21423760352693 LTS-027 NA NA NA NA LTS-027 chr8 24157599 24166117 8519 * ADAM28 NA 0 NA 0.308 1 NA NA NA NA NA LTS-027 chr8 24166118 24813995 647878 * c(ADAM28, ADAMDEC1, NEFM, NEFL, ADAM7) 0.30233740783396 15 0.122973283974319 0.409283727436657 575 0.246309404278367 1 1 0 -7.01382715776579 LTS-027 chr8 24813996 30655161 5841166 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, PNMA2, RBPMS, CHRNA2, CLU, ADRA1A, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, GNRH1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, NEFL, SCARA3, SARAF, PNOC, KCTD9, ELP3, PPP2CB, PPP2R2A, CCDC25, INTS9, PBK, ZNF395, LINC00589, MBOAT4, EBF2, BNIP3L, HMBOX1, FZD3, UBXN8, DOCK5, STMN4 NA NA NA NA NA NA NA NA NA LTS-027 ) 0.307681485432731 100 0.090518316690964 0.549529591285157 4627 0.352538328730522 1 1 0 -6.91065547774907 LTS-027 NA NA NA NA LTS-027 chr8 30655162 31031132 375971 * c(PURG, PPP2CB, TEX15, WRN) 0.36666984517148 7 0.102114081860857 0.408616724742915 521 0.240407734664998 1 1 0 -7.11794315702859 LTS-027 chr8 31031133 35093085 4061953 * c(NRG1-IT3, UNC5D, NRG1, WRN, DUSP26, RNF122, TTI2, MAK16, FUT10) 0.10167074292061 9 0.0499719365688828 1.53140110971533 533 1.11037264156557 6 6 0 -6.73545511007432 LTS-027 chr8 35093086 37455618 2362533 * c(UNC5D, KCNU1) 0.30905992152288 3 0.0845832922824202 0.440679511084947 463 0.224592241456889 1 1 0 -7.24165970468026 LTS-027 chr8 37455619 39027515 1571897 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.291189517838385 27 0.113442832974483 0.589459402968509 2615 0.316055697884944 1 1 0 -6.94933757221209 LTS-027 chr8 39027516 39618637 591122 * c(LOC100130964, ADAM3A, ADAM32, ADAM2, ADAM5, ADAM18) 0.31075597512835 12 0.104626717429154 0.458657785422128 267 0.232243787348833 1 1 0 -6.8000063440226 LTS-027 chr8 39618638 39645749 27112 * ADAM2 NA 0 NA 0.469290687250106 31 0.234675923876549 1 NA NA -5.76617779564024 LTS-027 chr8 39645750 39646087 338 * ADAM2 NA 0 NA 1.134 1 NA NA NA NA NA LTS-027 chr8 39646088 39695535 49448 * ADAM2 0.119 1 NA 2.30372218028858 29 1.11142398121052 10 10 0 -5.76441235259661 LTS-027 chr8 39695536 42592290 2896755 * c(AP3M2, CHRNB3, SMIM19, GPAT4, NKX6-3, IDO2, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, GINS4) 0.0925739326063441 42 0.0328894957619455 1.80343679275548 2140 1.09867099012447 7 7 0 -6.7394615793994 LTS-027 chr8 42592291 43047593 455303 * c(MIR4469, HGSNAT, FNTA, THAP1, RNF170, POMK, HOOK3, CHRNA6) 0.0739832609641787 2 0.0424264068711929 2.40765203482911 562 1.60340700327324 9 9 0 -6.73529610541105 LTS-027 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 2.70727356459181 147 1.06931301032178 12 NA NA -5.76442174236819 LTS-027 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.291 1 NA 0.697307716234436 47 0.296524835044781 2 2 0 -5.76464303351744 LTS-027 chr8 48102988 49834145 1731158 * c(LOC100287846, CEBPD, SPIDR, MCM4, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.218158451158018 12 0.0649927734910629 1.0328086949538 1039 0.55045214234874 3 3 0 -7.08466860681668 LTS-027 chr8 49834146 49985287 151142 * C8orf22 NA 0 NA 0.292 1 NA NA NA NA NA LTS-027 chr8 49985288 55013593 5028306 * c(LYPLA1, PCMTD1, PXDNL, NPBWR1, FAM150A, C8orf22, OPRK1, ATP6V1H, SNTG1, TCEA1, RGS20, ST18, RB1CC1) 0.261000696605948 45 0.120689538264361 0.667133321675018 1461 0.449617894552889 2 2 0 -6.84460288400171 LTS-027 chr8 55013594 55014232 639 * LYPLA1 NA 0 NA 1.213 1 NA NA NA NA NA LTS-027 chr8 55014233 55373447 359215 * c(LYPLA1, MRPL15, SOX17) 0.0955216799444581 2 0.10040916292849 1.65131297013211 91 0.774383433182362 7 7 0 -6.73407030063043 LTS-027 chr8 55373448 55533469 160022 * c(RP1, SOX17) NA 0 NA 0.256 1 NA NA NA NA NA LTS-027 chr8 55533470 92967281 37433812 * c(C8orf88, STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, LRRC69, MSC-AS1, SBF1P1, ZFHX4-AS1, REXO1L2P, MIR2052, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4661, MIR4470, MIR5708, MIR5681A, MIR5681B, LINC00534, LOC101241902, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, WWP1, STMN2, XKR4, SLC26A7, C8orf34, TMEM68, ADHFE1, UBXN2B, DCAF4L2, RALYL, CRH, RDH10, SLC7A13, MCMDC2, CLVS1, SBSPON, NA NA NA NA NA NA NA NA NA LTS-027 CYP7A1, DECR1, CNBD1, TMEM64, E2F5, SDR16C5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, LINC00588, PTTG3P, SNORD54, STAU2, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, XKR9, LOC392232, LOC401463, C8orf59, LYN, MIR124-2, MMP16, MOS, MIR2052HG, ASPH, MYBL1, NBN, PI15, ZC2HC1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 LACTB2, RMDN1, PDE7A, OTUD6B, PENK, PLAG1, PMP2, GDAP1, CNGB3, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, TMEM55A, CHD7, PKIA, PAG1, C8orf44, JPH1, CPA6, PEX2, RAB2A, RP1, RPL7, ZNF704, RPS20, SDCBP, PRDM14, SNX16, SNHG6, SNORD87, NECAB1, UG0898H09, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, TTPA, OSGIN2, CA1, CA2, CA3, CA8, CHCHD7, CALB1, ZFAND1, ZFHX4, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 NSMAF, TRIM55, LRRCC1, DNAJC5B, PSKH2, RUNX1T1, RIPK2, GGH, CPNE3, TRPA1, FAM110B, MSC, CHMP4C, KCNB2, CYP7B1, MTFR1, TGS1, TOX) 0.234783574694405 223 0.0955742820041057 0.651157668579517 13464 0.44437847335092 2 2 0 -7.37485928311868 LTS-027 NA NA NA NA LTS-027 chr8 92967282 104085267 11117986 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, OSR2, COX6C, FAM92A1, NDUFAF6, ANKRD46, C8orf37, VPS13B, SNX31, ERICH5, RAD54B, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, TRIQK, DPY19L4, FBXO43, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, FLJ42969, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, PDP1, NA NA NA NA NA NA NA NA NA LTS-027 ESRP1, LAPTM4B, RBM12B-AS1, INTS8, RPL30, LINC01298, SDC2, LINC00535, SPAG1, STK3, MIR599, KLF10, UQCRB, YWHAZ, PLEKHF2, NIPAL2, GRHL2, NACAP1, NCALD, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.223244595666979 108 0.0748280427467431 0.711467687759833 6187 0.461681566494355 2 2 0 -6.73737711437807 LTS-027 NA NA NA NA LTS-027 chr8 104085268 109009553 4924286 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, ATP6V1C1, OXR1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.229465622825485 23 0.0677373443979535 0.61243458662632 1546 1.89157638594615 2 2 0 -6.76058886356903 LTS-027 chr8 109009554 109094749 85196 * RSPO2 NA 0 NA 1 1 NA NA NA NA NA LTS-027 chr8 109094750 114612543 5517794 * c(MIR2053, CSMD3, TMEM74, KCNV1, RSPO2, EIF3E, SYBU, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0.201917530124659 20 0.072239076755772 0.747898231523592 1608 0.415181114186331 2 2 0 -6.839457643375 LTS-027 chr8 114612544 114628052 15509 * character(0) 0.103 1 NA 0.24314575624242 13 0.100768203165635 0 0 0 -5.81779995205864 LTS-027 chr8 114628053 116636000 2007948 * TRPS1 0.149 1 NA 0.720950096374166 240 0.380654862925405 2 2 0 -5.76898724686649 LTS-027 chr8 116636001 116679959 43959 * TRPS1 NA 0 NA 2.016 1 NA NA NA NA NA LTS-027 chr8 116679960 121327881 4647922 * c(MIR3610, LINC00536, COLEC10, MAL2, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, DEPTOR, TAF2, TRPS1, COL14A1, DSCC1, UTP23, EIF3H, MED30) 0.0629480850476952 34 0.0227183797217936 2.49544109648506 1701 1.26076859969382 11 11 0 -6.73326168467261 LTS-027 chr8 121327882 121328107 226 * COL14A1 NA 0 NA 1.745 1 NA NA NA NA NA LTS-027 chr8 121328108 122626114 1298007 * c(MTBP, MRPL13, HAS2, SNTB1, COL14A1) 0.104350889359326 2 0.00848528137423857 1.88110125345515 413 0.95198258717386 6 6 0 -6.78061094946923 LTS-027 chr8 122626115 122626208 94 * HAS2 NA 0 NA 1.302 1 NA NA NA NA NA LTS-027 chr8 122626209 126163576 3537368 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, NSMCE2, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, HAS2-AS1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.125833871577629 35 0.0577030648880888 1.18695163622837 2287 0.646300668009786 5 5 0 -6.77876277375629 LTS-027 chr8 126163577 126168094 4518 * NSMCE2 NA 0 NA 1.869 1 NA NA NA NA NA LTS-027 chr8 126168095 129162510 2994416 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, PCAT1, TRIB1, FAM84B, NSMCE2, MYC, POU5F1B, PVT1, CASC8) 0.110945890968276 7 0.101562319596909 1.5367781022133 426 1.2975331105737 6 6 0 -6.73684453494463 LTS-027 chr8 130496231 132002576 1506346 * c(ASAP1-IT2, MIR5194, ADCY8, ASAP1-IT1, ASAP1, FAM49B, GSDMC) 0.0478207394174096 14 0.0213269936779814 3.09133934909727 472 1.89147381536556 15 15 0 -6.73394389466512 LTS-027 chr8 132002577 132054651 52075 * ADCY8 NA 0 NA 3.52062330037823 75 0.912503397895685 16 NA NA -5.76441972431276 LTS-027 chr8 132916302 132982824 66523 * EFR3A 0.214 1 NA 0.518052034324147 57 0.314219824917091 1 1 0 -5.76459666907576 LTS-027 chr8 132982825 133900766 917942 * c(HHLA1, TMEM71, EFR3A, LRRC6, KCNQ3, PHF20L1, TG, OC90, HPYR1) 0.266569423186663 5 0.127344807510946 0.448587347816385 936 0.237641256553557 1 1 0 -6.93125076010232 LTS-027 chr8 133900767 133905902 5136 * TG NA 0 NA 0.645 1 NA NA NA NA NA LTS-027 chr8 133905903 134488377 582475 * c(NDRG1, ST3GAL1, SLA, TG, WISP1) 0.294805410511886 30 0.0859876294230345 0.624066861991267 685 0.307521451536854 1 1 0 -6.89744666218781 LTS-027 chr8 134488378 134488398 21 * ST3GAL1 NA 0 NA 0.247 1 NA NA NA NA NA LTS-027 chr8 134488399 139838912 5350514 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, ZFAT, ZFAT-AS1, ST3GAL1) 0.320401510637778 18 0.074509024763728 0.494550164198259 816 0.264675294862542 1 1 0 -6.78555278026356 LTS-027 chr8 139838913 139895552 56640 * COL22A1 NA 0 NA 0.629778517524674 37 0.252127223116895 2 NA NA -5.77107645158345 LTS-027 chr8 140630197 140945896 315700 * c(KCNK9, TRAPPC9) 0.13 1 NA 1.51130589741967 127 0.740952892886124 6 6 0 -5.76446161231767 LTS-027 chr8 140945897 142229126 1283230 * c(DENND3, AGO2, CHRAC1, SLC45A4, PTK2, TRAPPC9) 0.179804056081174 19 0.0632846072948852 1.1674357730772 1005 0.664181355370017 3 3 0 -6.85674776014072 LTS-027 chr8 142229127 142229706 580 * SLC45A4 NA 0 NA 2.068 1 NA NA NA NA NA LTS-027 chr8 142229707 144097377 1867671 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, MROH5, THEM6, LY6K, SLURP1, SLC45A4, ADGRB1, LINC00051, LYNX1, LINC01300, PSCA, LY6D, JRK) 0.0995036672892214 83 0.0676601245035814 1.62681957526256 1381 1.10632935720232 7 7 0 -6.74223345774983 LTS-027 chr8 144097378 144163997 66620 * c(LOC100133669, C8orf31, LY6E) NA 0 NA 1.78132487089477 83 0.788342288362317 7 NA NA -5.76458770826507 LTS-027 chr8 144163998 144239319 75322 * character(0) NA 0 NA 0.563 1 NA NA NA NA NA LTS-027 chr8 144239320 144295154 55835 * c(GPIHBP1, LY6H) 0.263 1 NA 0.47045233393171 33 0.173234733027972 1 1 0 -5.77066599817927 LTS-027 chr8 144295155 146221350 1926196 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, MIR661, NA NA NA NA NA NA NA NA NA LTS-027 TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.282259111551903 78 0.0877648837814694 0.566885744772927 5827 0.284141914322688 1 1 0 -6.94762421107623 LTS-027 NA NA NA NA LTS-027 chr8 146221351 146280905 59555 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) NA 0 NA 0.547331184067229 124 0.272593053211786 1 NA NA -5.76722005999318 LTS-027 chr9 14732 14764 33 * WASH1 0.205 1 NA 3.079 1 NA NA NA NA NA LTS-027 chr9 14765 21077279 21062515 * c(LINC00583, C9orf92, WASH1, MIR3152, MIR4473, MIR4665, MIR4474, RCL1, DMRT2, RRAGA, PSIP1, INSL6, UHRF2, PLIN2, C9orf66, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, CCDC171, FOXD4, KDM4C, MLANA, KANK1, SLC24A2, RANBP6, GLDC, LURAP1L, CD274, ZDHHC21, ACER2, IFNB1, INSL4, JAK2, LOC389705, VLDLR-AS1, LINC01235, HACD4, PLPP6, MIR101-2, MLLT3, NFIB, AK3, BNC2, HAUS6, CNTLN, FOCAD, SPATA6L, CDC37L1, NA NA NA NA NA NA NA NA NA LTS-027 DENND4C, PLGRKT, CBWD1, MIR491, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, SH3GL2, SLC1A1, FAM138C, SMARCA2, SNAPC3, SCARNA8, TYRP1, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PUM3) 0.305910715083811 169 0.090537679606733 0.481528285913626 8000 0.301912074901959 1 1 0 -7.08156346165069 LTS-027 NA NA NA NA LTS-027 chr9 21077280 21077311 32 * IFNB1 NA 0 NA 0.215 1 NA NA NA NA NA LTS-027 chr9 21077312 21351324 274013 * c(IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KLHL9) NA 0 NA 0.370698861119531 257 0.351183661232389 0 NA NA -5.80694991761894 LTS-027 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.209 1 NA NA NA NA NA LTS-027 chr9 21367330 21441181 73852 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.4 1 NA 0.187845090924707 73 0.162092044993665 0 0 0 -6.15965815685731 LTS-027 chr9 21441182 26995787 5554606 * c(CDKN2B-AS1, IZUMO3, LOC100506422, CDKN2A, CDKN2B, ELAVL2, TUSC1, IFNE, IFNA1, MIR31, LINC01239, MTAP, CDKN2A-AS1, MIR31HG, DMRTA1, LRRC19, CAAP1, IFT74, PLAA) 0.347339093678962 16 0.0832894301017042 0.475299779369211 899 0.28705096978784 1 1 0 -7.04570079189182 LTS-027 chr9 26995788 26999744 3957 * c(LRRC19, IFT74) NA 0 NA 0.595686293248354 23 0.152532093428536 1 NA NA -5.76705736332954 LTS-027 chr9 26999745 27009039 9295 * c(LRRC19, IFT74) NA 0 NA 2.893 1 NA NA NA NA NA LTS-027 chr9 27009040 27009100 61 * IFT74 0.026 1 NA 5.368 1 NA NA NA NA NA LTS-027 chr9 27009101 27949812 940712 * c(LINC00032, LINGO2, C9orf72, EQTN, IFNK, TEK, MOB3B, IFT74) 0.0811605430646449 15 0.0313092105723965 2.04688611398101 685 0.965827806073064 8 8 0 -6.73764017517448 LTS-027 chr9 27949813 27949911 99 * LINGO2 NA 0 NA 1.313 1 NA NA NA NA NA LTS-027 chr9 27949912 34724213 6774302 * c(SNORD121A, MIR876, MIR873, TOPORS-AS1, SNORD121B, TOPORS, SIGMAR1, CCL27, PTENP1, DCTN3, CNTFR, TAF1L, ARID3C, RPP25L, LINGO2, FAM219A, DDX58, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, ENHO, LINC01242, TMEM215, CNTFR-AS1, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, UBAP1, CHMP5, APTX, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, CCL19, CCL21, NOL6, NA NA NA NA NA NA NA NA NA LTS-027 C9orf24) 0.211673280035485 82 0.0877443282978978 0.938299674143981 3364 0.561565546432225 3 3 0 -6.87416217651981 LTS-027 NA NA NA NA LTS-027 chr9 34724214 34726412 2199 * FAM205A 0.139764032008923 3 0.0735119037979564 0.305181099877591 53 0.226080938407411 4 4 0 -6.77526643175496 LTS-027 chr9 34726413 34833277 106865 * c(FAM205A, FAM205BP) 0.0968626608503998 4 0.0882963759165686 0.627837524341298 81 0.410440874074587 5 5 0 -6.96617696784502 LTS-027 chr9 34833278 34833287 10 * FAM205BP NA 0 NA 0.26 1 NA NA NA NA NA LTS-027 chr9 34833288 34835727 2440 * FAM205BP NA 0 NA 0.240452032233305 60 0.106636956049393 0 NA NA -5.77267504659269 LTS-027 chr9 34835728 38527470 3691743 * c(GNE, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, DNAJB5, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM205BP, FAM221B, OR13J1, TOMM5, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, FAM214B, ZCCHC7, RECK, HINT2, PIGO, NA NA NA NA NA NA NA NA NA LTS-027 ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.220008997433 72 0.0824479349155028 0.77649036311018 4766 0.418892093242787 2 2 0 -6.85113418416657 LTS-027 NA NA NA NA LTS-027 chr9 38527471 43861081 5333611 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.189152956255454 9 0.110386945685519 0.445904586774769 316 0.375341379781568 1 1 0 -7.68761273604648 LTS-027 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.524133292702892 8 0.316522511047793 1 NA NA -5.76648019445146 LTS-027 chr9 65602571 66457127 854557 * LOC286297 0.419 1 NA 1.9191490837591 3 1.43993136410502 8 8 0 -5.7644792824815 LTS-027 chr9 66457128 68415373 1958246 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.3030611564222 20 0.12099555233235 1.73239380330819 50 0.739650033351405 7 5 2 -6.75336558310489 LTS-027 chr9 68415374 68427846 12473 * FRG1JP NA 0 NA 0.519 1 NA NA NA NA NA LTS-027 chr9 68427847 69002317 574471 * c(FRG1HP, FRG1JP) 0.292782026411003 7 0.115463867776481 0.961481433743809 13 0.444924496619716 4 3 1 -6.79751133963222 LTS-027 chr9 69002318 71145379 2143062 * c(LOC100133920, FOXD4L3, LOC440896, PGM5, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.279 1 NA 0.641879257310666 73 0.334496129392235 2 2 0 -5.86157167014794 LTS-027 chr9 71145380 79302569 8157190 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, TMEM252, ALDH1A1, SMC5, TMEM2, FXN, MAMDC2, GCNT1, OSTF1, ANXA1, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, PRKACG, RORB, RPSAP9, KLF9, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.235550818409422 68 0.0784886024283152 0.704245205999705 3840 0.412998070289328 2 2 0 -6.75625066631139 LTS-027 chr9 79302570 79403521 100952 * c(PRUNE2, PCA3) 0.241374057882047 15 0.0927242198801422 0.437867013119756 186 0.166527336908415 1 1 0 -7.05311398464529 LTS-027 chr9 79403522 79438464 34943 * PRUNE2 NA 0 NA 0.576 1 NA NA NA NA NA LTS-027 chr9 79438465 84304255 4865791 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, PSAT1, FOXB2, TLE1, TLE4, CEP78, GNA14) 0.222283201619515 19 0.0794573334328387 0.788583822360036 1485 0.459698927622903 2 2 0 -6.90531960903782 LTS-027 chr9 84304256 84528429 224174 * SPATA31D5P NA 0 NA 0.569 1 NA NA NA NA NA LTS-027 chr9 84528430 84610243 81814 * c(SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) 0.162 1 NA 0.442208406898371 144 0.168692379296032 1 1 0 -5.79652536979222 LTS-027 chr9 84610244 84675661 65418 * character(0) NA 0 NA 0.811 1 NA NA NA NA NA LTS-027 chr9 84675662 99703196 15027535 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, LOC100507346, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, SLC35D2, CKS2, PTPDC1, ANKRD19P, CTSL, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF782, LOC158434, LOC158435, DAPK1, ZNF169, ECM2, S1PR3, AAED1, ZNF367, NA NA NA NA NA NA NA NA NA LTS-027 SUSD3, FANCC, FBP1, ZNF510, HABP4, FAM120A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, UBQLN1, HNRNPK, HSD17B3, IARS, LINC01501, ERCC6L2, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SHC3, NUTM2F, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, PTCH1, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, C9orf64, CARD19, MFSD14B, C9orf3, CDC14B, FBP2, FGD3) 0.21315169266672 144 0.0741714368833418 0.744131105628655 8550 0.910884490229185 2 2 0 -6.77109517117692 LTS-027 NA NA NA NA LTS-027 chr9 99703197 99703299 103 * NUTM2G NA 0 NA 0.422 1 NA NA NA NA NA LTS-027 chr9 99703300 99961959 258660 * c(CTSV, GAS2L1P2, NUTM2G, MFSD14C) 0.142369207221934 3 0.0402616442783948 0.498399029894022 158 0.431374586902834 4 4 0 -7.21402360496663 LTS-027 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 0.804 1 NA NA NA NA NA LTS-027 chr9 100041691 101832142 1790452 * c(CCDC180, LOC100499484, ANP32B, COL15A1, TSTD2, ANKS6, FOXE1, TDRD7, LOC286359, NCBP1, TRMO, NANS, TBC1D2, HEMGN, LOC100499484-C9ORF174, TMOD1, CORO2A, XPA, GALNT12, GABBR2, TRIM14) 0.214949928751324 39 0.0634689506160902 0.763841056546056 2049 0.396684761114903 2 2 0 -6.78169247695094 LTS-027 chr9 101832143 101832266 124 * COL15A1 NA 0 NA 0.346 1 NA NA NA NA NA LTS-027 chr9 101832267 106903670 5071404 * c(MSANTD3-TMEFF1, NAMA, SMC2, SEC61B, GRIN3A, COL15A1, CYLC2, ALDOB, ERP44, INVS, MURC, STX17-AS1, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, RNF20, BAAT, TGFBR1, ZNF189, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3) 0.220304685104089 33 0.0812096170040186 0.633685930184402 2022 0.339011990309995 2 2 0 -7.01435546738288 LTS-027 chr9 106903671 107266448 362778 * SMC2 NA 0 NA 0.248 1 NA NA NA NA NA LTS-027 chr9 107266449 107457836 191388 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.266187351817461 5 0.0669313080702895 0.373854646089992 194 0.14680345916234 1 1 0 -7.39044380303237 LTS-027 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.341 1 NA NA NA NA NA LTS-027 chr9 107509996 113128559 5618564 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, ABCA1, FKTN, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, NA, C9orf152, MIR32, PALM2-AKAP2, EPB41L4B, FAM206A, TMEM38B, NIPSNAP3B, PTPN3, ZNF462, RAD23B, TAL2, TXN, SVEP1, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.217454193132749 55 0.0674219438945401 0.757809313270875 3322 1.40093002922362 2 2 0 -6.74316284581965 LTS-027 chr9 113128560 113128675 116 * SVEP1 NA 0 NA 0.377 1 NA NA NA NA NA LTS-027 chr9 113128676 114124445 995770 * c(LPAR1, KIAA0368, OR2K2, MUSK, SVEP1) 0.208445129523148 24 0.0910588279351735 0.585514714543403 650 0.311217229297771 2 2 0 -6.94599340236504 LTS-027 chr9 114124446 117074810 2950365 * c(FAM225B, MIR3134, MIR4668, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, C9orf43, AMBP, GNG10, FAM225A, SNX30, POLE3, BSPRY, DNAJC25, DNAJC25-GNG10, SLC46A2, INIP, RGS3, MIR455, SUSD1, LRRC37A5P, UGCG, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.232877607296301 91 0.0695067569031188 0.795325610323786 3841 0.411973635140512 2 2 0 -6.90382116746619 LTS-027 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.056 1 NA NA NA NA NA LTS-027 chr9 117085363 117089956 4594 * ORM1 0.23 1 NA 0.180920455382296 46 0.140829900481273 0 0 0 -5.8043700349996 LTS-027 chr9 117089957 117092184 2228 * c(ORM1, ORM2) NA 0 NA 0.52 1 NA NA NA NA NA LTS-027 chr9 117092185 125273477 8181293 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, WHRN, PHF19, FBXW2, LHX6, OR1J2, GGTA1P, GSN, TNC, OR1J1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, PTGS1, LINC00474, TLR4, TRAF1, C5, AKNA, MRRF, RBM18, TNFSF8, ATP6V1G1, TNFSF15) 0.210362317709394 52 0.0855801490740431 0.7695801570031 4134 0.429563732104493 2 2 0 -6.94328205022484 LTS-027 chr9 125273478 125551240 277763 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1B1, OR1L6, OR5C1) 0.183820870138403 6 0.0567509177605672 0.483003199052985 288 0.231787521743858 2 2 0 -7.37997769119811 LTS-027 chr9 125551241 130210849 4659609 * c(LOC100129034, MIR181A2HG, RABEPK, ZBTB6, NEK6, RPL35, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, SNORA65, GOLGA1, GPR21, CRB2, SCAI, SLC2A8, HSPA5, ADGRD2, OR5C1, OR1K1, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PDCL, PBX3, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, RPL12, NRON, SNORD90, MIR601, ZNF79, MAPKAP1, MIR600HG, ARPC5L, GARNL3, MVB12B, LHX2, RALGPS1) 0.210276351414177 48 0.0788418832422938 0.771408031894267 4348 0.436288275609936 2 2 0 -6.86182651854267 LTS-027 chr9 130210850 130211636 787 * c(SNORA65, RPL12) NA 0 NA 1.061 1 NA NA NA NA NA LTS-027 chr9 130211637 133339609 3127973 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, CDK9, ZER1, USP20, SLC27A4, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, NCS1, NUP188, FPGS, PHYHD1, CIZ1, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA2, CFAP157, NTMT1, PKN3, ST6GALNAC6, SWI5, C9orf50, PTGES2-AS1, IER5L, LCN2, FAM102A, MIR199B, MIR219A2, C9orf106, NA NA NA NA NA NA NA NA NA LTS-027 ASS1, ODF2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, GPR107, RPL12, SET, FAM129B, SPTAN1, STXBP1, C9orf16, PTGES2, URM1, ZDHHC12, MIGA2, DPM2, KYAT1, WDR34, LRSAM1, PTGES) 0.208577454135878 88 0.0581954154043571 0.907005436449897 6337 0.554005498925545 3 3 0 -6.96189316022443 LTS-027 NA NA NA NA LTS-027 chr9 133339610 137967461 4627852 * c(RNU6ATAC, LOC100272217, MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, LAMC3, OLFM1, CEL, CELP, POMT1, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, AK8, DBH, STKLD1, SARDH, FCN1, FCN2, SETX, EXOSC2, ABL1, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, FAM78A, RAPGEF1, OBP2B, QRFP, CFAP77, TMEM8C, ASS1, BARHL1, REXO4, NA NA NA NA NA NA NA NA NA LTS-027 RALGDS, PRDM12, RPL7A, RXRA, FAM163B, DDX31, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, TTF1, VAV2, BRD3, NUP214, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, GTF3C5, GTF3C4, MED27, ADAMTSL2) 0.218095605938453 117 0.0663736320635225 0.83665527559967 6264 0.566191931703474 2 2 0 -6.98031768439295 LTS-027 NA NA NA NA LTS-027 chr9 137967462 137967557 96 * OLFM1 NA 0 NA 0.389 1 NA NA NA NA NA LTS-027 chr9 137967558 138236329 268772 * c(OLFM1, C9orf62, LOC401557) 0.302519614847328 6 0.0712170391596468 0.468508559319014 155 0.222971090985279 1 1 0 -6.75422503791569 LTS-027 chr9 138236330 138376205 139876 * c(PPP1R26-AS1, C9orf62, PPP1R26) NA 0 NA 1.139 1 NA NA NA NA NA LTS-027 chr9 138376206 139690840 1314635 * c(LOC100128593, LINC01502, MIR4673, MIR4674, UBAC1, AGPAT2, SDCCAG3, NACC2, C9orf116, LCN8, FAM69B, CAMSAP1, C9orf163, LCN6, QSOX2, PMPCA, GPSM1, DKFZP434A062, OBP2A, GLT6D1, LCN15, LCN9, LCN1, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, INPP5E, KCNT1, CARD9, SNAPC4, SNORA17A, SNORA17B, DNLZ, LHX3, CCDC183, SNHG7, TMEM141, C9orf69, PPP1R26, SEC16A) 0.195231288965547 118 0.0628146790610946 0.865108316502135 2962 1.32360136553407 3 3 0 -6.8150417652744 LTS-027 chr9 139690841 139794957 104117 * c(CCDC183-AS1, MIR4292, MIR4479, MAMDC4, PHPT1, C9orf172, RABL6, TRAF2, CCDC183, EDF1) NA 0 NA 0.800738283530547 488 0.530355194600113 3 NA NA -5.76752322397924 LTS-027 chr9 139794958 139848273 53316 * c(LCN12, FBXW5, TRAF2, C8G) 0.077 1 NA 1.63731915698378 170 0.699816791797288 7 7 0 -5.76447598514062 LTS-027 chr9 139848274 140123594 275321 * c(MAN1B1-AS1, MIR3621, MAN1B1, SLC34A3, ABCA2, FUT7, NDOR1, LCN12, C9orf142, TPRN, GRIN1, ANAPC2, DPP7, CYSRT1, LRRC26, LCNL1, C9orf139, NPDC1, PTGDS, RNF224, RNF208, SSNA1, SAPCD2, CLIC3, UAP1L1, TMEM203, ENTPD2) 0.114677109811918 38 0.0541556486587509 1.54349347418992 1682 1.09582057755923 5 5 0 -6.74228815430196 LTS-027 chr9 140123595 140126076 2482 * c(SLC34A3, RNF224) NA 0 NA 1.224 1 NA NA NA NA NA LTS-027 chr9 140126077 141070283 944207 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, PNPLA7, ENTPD8, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.19449054227545 20 0.128040454133593 1.23657302698323 1700 0.61246913994189 6 5 1 -6.84834816193235 LTS-027 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 1.1470755625787 5 0.0763884808069908 4 NA NA -5.76469299260378 LTS-027 chr10 94832 95229 398 * TUBB8 0.205 1 NA 1.60390784765201 5 0.574597511306828 7 7 0 -5.76441211325844 LTS-027 chr10 95230 4882008 4786779 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.437888451886118 40 0.0365442390843811 1.24431261757195 1771 0.743868405905605 4 2 2 -6.85237130960136 LTS-027 chr10 4882009 5091015 209007 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.448513517944176 7 0.0587350791589619 0.57172720425264 236 0.415818826276073 2 1 1 -6.83368156191308 LTS-027 chr10 5091016 5120124 29109 * AKR1C3 NA 0 NA 1.725 1 NA NA NA NA NA LTS-027 chr10 5120125 6498799 1378675 * c(MIR3155A, MIR3155B, NET1, AKR1C4, UCN3, GDI2, AKR1C8P, IL2RA, IL15RA, LOC399715, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, ASB13, TUBAL3, CALML3, FBXO18, RBM17, AKR1C3) 0.436894391263342 49 0.0477388017997824 1.1751527939977 1473 0.670689593931986 4 2 2 -6.76014352804438 LTS-027 chr10 6498800 6504356 5557 * PRKCQ NA 0 NA 0.988482267625072 6 0.159803629495703 3 NA NA -5.76551991446227 LTS-027 chr10 6504357 7615195 1110839 * c(LINC00707, PRKCQ-AS1, PRKCQ, SFMBT2, ITIH5) 0.253 1 NA 0.911048599872228 411 0.383335492461145 3 3 0 -5.76492335871164 LTS-027 chr10 7615196 15600295 7985100 * c(PPIAP30, MIR1265, MIR4480, OPTN, RPP38, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ITIH2, GATA3-AS1, ACBD7, CELF2-AS2, CDNF, ATP5C1, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ITIH5, FAM107B, CCDC3, TAF3, ITGA8, PRPF18, CDC123, NMT2, USP6NL) 0.378694423929517 81 0.0875368493835596 0.990184844410138 3810 0.655219552489815 3 2 1 -6.8344288484651 LTS-027 chr10 15600296 15614210 13915 * ITGA8 NA 0 NA 0.61 1 NA NA NA NA NA LTS-027 chr10 15614211 17949683 2335473 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, MRC1, NA, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.381966304698095 29 0.066598273620726 0.808812090237566 1332 0.413971900476677 3 2 1 -6.83011771149932 LTS-027 chr10 17949684 17952627 2944 * c(MRC1, NA, TMEM236) NA 0 NA 0.024 1 NA NA NA NA NA LTS-027 chr10 17952628 18196475 243848 * c(MRC1, NA, TMEM236) NA 0 NA 0.169271702466884 97 0.0892313022469542 0 NA NA -9.2902681493013 LTS-027 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 0.887 1 NA NA NA NA NA LTS-027 chr10 18198201 36810839 18612639 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, CREM, MPP7, ENKUR, ARMC3, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, ITGB1, PTCHD3, KIF5B, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, NA NA NA NA NA NA NA NA NA LTS-027 PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, CACNB2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, PLXDC2, MASTL, NRP1, ACBD5, ARHGAP12, SPAG6) 0.386576757917106 179 0.07404858511226 0.89183217337912 7820 0.579351911560816 3 2 1 -6.73683181562968 LTS-027 NA NA NA NA LTS-027 chr10 36810840 36812667 1828 * character(0) NA 0 NA 0.293896752529389 45 0.1629371044299 0 NA NA -5.76452563348682 LTS-027 chr10 36812668 36812681 14 * character(0) NA 0 NA 0.526 1 NA NA NA NA NA LTS-027 chr10 36812682 38645343 1832662 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.329301983579945 14 0.119059247417428 0.851666588587567 578 0.480194202983755 3 2 1 -6.88275820380074 LTS-027 chr10 38645344 38740384 95041 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 0.65179344560712 59 0.300039556129768 2 NA NA -5.76819961226517 LTS-027 chr10 42379879 45477829 3097951 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, C10orf10, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF32, ZNF33B, ZNF239, RASSF4, LINC00839, BMS1) 0.24074057657266 42 0.0825028630763538 0.683816831471222 1251 0.386362532881216 2 2 0 -6.7811721014886 LTS-027 chr10 45477830 46963951 1486122 * c(RSU1P2, MIR3156-1, AGAP4, MARCH8, C10orf25, ALOX5, FAM21C, PTPN20, ANKRD30BP3, GLUD1P7, FAM35BP, NA, NA, ZNF22, OR13A1, SYT15, RASSF4, ZFAND4) 0.418 1 NA 0.711937297080396 643 0.371317855269855 2 2 0 -5.76517719296561 LTS-027 chr10 46963952 47087731 123780 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, SYT15, GPRIN2) 0.440221385896189 35 0.0838895532403001 0.911266921684858 160 0.594390308630374 4 2 2 -6.7521871788197 LTS-027 chr10 47087732 47667380 579649 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.2 1 NA 0.77315253477838 45 0.735467732710678 2 2 0 -5.77001121152667 LTS-027 chr10 47667381 50669662 3002282 * c(MIR4294, FAM170B-AS1, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, NA, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, NA, FRMPD2B) 0.175204971381943 34 0.0965614892807749 0.704066014220926 1775 0.394089230273628 2 2 0 -6.85989445722799 LTS-027 chr10 50669663 50678189 8527 * c(ERCC6, NA) NA 0 NA 0.232 1 NA NA NA NA NA LTS-027 chr10 50678190 59986849 9308660 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, NA, CHAT, ZWINT, ERCC6, DKK1, CSTF2T, IPMK, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, OGDHL, PRKG1, ASAH2, PCDH15, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, NCOA4, PARG) 0.281088585162094 40 0.109093229360523 0.598672103048562 2092 0.3607713824612 1 1 0 -7.7608364212148 LTS-027 chr10 59986850 59986855 6 * IPMK NA 0 NA 0.858 1 NA NA NA NA NA LTS-027 chr10 59986856 70454269 10467414 * c(MIR1296, MRLN, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, RTKN2, ATOH7, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, SIRT1, IPMK, HERC4, LINC01553, ANK3, CTNNA3, NRBF2, ANXA2P3, HNRNPH3, LRRTM3, RUFY2, CISD1, DNAJC12, PBLD, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, TET1, SLC25A16, ARID5B, PHYHIPL, MYPN, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.234497339826773 83 0.0941678729951848 0.688162816152349 4432 0.411777378125996 2 2 0 -6.76671485800877 LTS-027 chr10 70454270 70480988 26719 * CCAR1 NA 0 NA 0.904 1 NA NA NA NA NA LTS-027 chr10 70480989 81205247 10724259 * c(DLG5-AS1, ZNF503-AS2, LINC00856, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, USP54, FUT11, OIT3, EIF4EBP2, ZCCHC24, UNC5B, STOX1, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, KIF1BP, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, HK1, ANXA7, FAM149B1, DUPD1, KCNMA1, C10orf105, C10orf55, LINC00595, DNAJC9-AS1, NODAL, NA NA NA NA NA NA NA NA NA LTS-027 P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, SRGN, CCAR1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, AGAP5, BMS1P4, VCL, VDAC2, DDX50, SYNPO2L, HKDC1, CAMK2G, C10orf11, PLA2G12B, ZNF503, AIFM2, NDST2, SGPL1, MCU, DDX21, DLG5, CHST3, VPS26A, SEC24C, SPOCK2) 0.2306196334962 123 0.0889690429517959 0.810810030495882 8838 0.429826133572867 3 3 0 -7.35048648851575 LTS-027 NA NA NA NA LTS-027 chr10 81205248 81852257 647010 * c(BMS1P21, EIF5AL1, TMEM254-AS1, ZCCHC24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.296733993127106 5 0.178165091979321 0.534543094693378 378 0.404255129514193 1 1 0 -6.74107714589347 LTS-027 chr10 81852258 81892385 40128 * c(PLAC9, TMEM254) NA 0 NA 1.397 1 NA NA NA NA NA LTS-027 chr10 81892386 82003854 111469 * c(PLAC9, ANXA11, LINC00857) 0.266812329502073 8 0.106690473533756 0.812997840332732 204 0.392698571849772 5 4 1 -6.82710830770222 LTS-027 chr10 82003855 82006241 2387 * character(0) 0.454 1 NA 0.319568004435137 47 0.143139933991366 0 0 0 -5.76447664185965 LTS-027 chr10 82006242 89624413 7618172 * c(KLLN, GRID1-AS1, MIR4678, NRG3, ADIRF, LDB3, AGAP11, CFL1P1, DYDC1, LINC00858, WAPL, LRIT1, GHITM, GLUD1, GRID1, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00863, MIR346, CCSER2, FAM35A, PTEN, RGR, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TSPAN14, FAM213A, DYDC2, ATAD1, PAPSS2, CDHR1, OPN4, MINPP1) 0.21500291594404 53 0.0845229291036879 0.724735259952341 2638 0.418767025021134 2 2 0 -6.75659876374534 LTS-027 chr10 89624414 89653682 29269 * PTEN NA 0 NA 0.267 1 NA NA NA NA NA LTS-027 chr10 89653683 89727414 73732 * PTEN 0.125 1 NA 0.27335736486489 101 0.202418216708491 0 0 0 -5.78132396952979 LTS-027 chr10 89727415 90069353 341939 * c(RNLS, PTEN) 0.361 1 NA 0.318960710910413 141 0.233363330174889 0 0 0 -5.76756589767421 LTS-027 chr10 90069354 92616934 2547581 * c(FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, LIPJ, IFIT5, FLJ37201, HTR7, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, RNLS, STAMBPL1, ACTA2, LIPK, LIPN, LINC00865, LIPF, CH25H, KIF20B) 0.38644516924838 25 0.100193695743129 0.306923928094077 1478 0.190563393416656 0 0 0 -6.84052924393008 LTS-027 chr10 92616935 95454699 2837765 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, FRA10AC1, NUDT9P1, HECTD2, FGFBP3, CYP26A1, CPEB3, MYOF, ANKRD1, HHEX, HTR7, FFAR4, CYP26C1, IDE, KIF11, PDE6C, EXOC6, MARCH5, PPP1R3C, CEP55, RBP4, TNKS2, PCGF5, BTAF1) 0.317730976235922 38 0.0937326219075986 0.549479433676038 2702 0.383703401275653 1 1 0 -6.81715040196564 LTS-027 chr10 95454700 95457898 3199 * FRA10AC1 NA 0 NA 0.421 1 NA NA NA NA NA LTS-027 chr10 95457899 97440394 1982496 * c(PLCE1-AS1, SORBS1, FRA10AC1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, SLC35G1, TBC1D12, TCTN3, PIPSL, HELLS, PLCE1, ALDH18A1, NOC3L, PDLIM1, LGI1) 0.303395853710652 52 0.100670442953553 0.466779962164267 1636 0.288255284663055 1 1 0 -6.82970178635618 LTS-027 chr10 97440395 97442995 2601 * TCTN3 0.433 1 NA 0.535240602827928 12 0.187814443404961 1 1 0 -5.76453967510319 LTS-027 chr10 97442996 97453551 10556 * TCTN3 NA 0 NA 0.445849361223881 56 0.163727930008704 1 NA NA -5.76831541605102 LTS-027 chr10 97453552 103433440 5979889 * c(TLX1NB, C10orf131, DNMBP-AS1, FRAT1, MIR1287, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ERLIN1, LBX1, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, ABCC2, COX15, CPN1, NKX2-3, DNTT, RRP12, DNMBP, FRAT2, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, TLX1, HPS1, CC2D2B, LBX1-AS1, GOLGA7B, C10orf62, NDUFB8, PAX2, EXOSC1, CUTC, PGAM1, CCNJ, NA NA NA NA NA NA NA NA NA LTS-027 CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, C10orf2, TM9SF3, ENTPD7, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, FBXW4, SLIT1, SNORA12, MIR608, TLL2, ENTPD1-AS1, WNT8B, PDZD7, UBTD1, KAZALD1, SFXN3, SLC25A28, MARVELD1, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, ARHGAP19, BTRC, OLMALINC, PKD2L1, OPALIN, ENTPD1, ZNF518A) 0.437106716412038 98 0.0685672157517864 0.767115549731375 7216 0.436163463914387 2 1 1 -6.87752882469744 LTS-027 NA NA NA NA LTS-027 chr10 103433441 104593938 1160498 * c(KCNIP2-AS1, RPARP-AS1, ACTR1A, NPM3, MGEA5, SFXN2, CYP17A1, FGF8, PPRC1, KCNIP2, ARL3, NFKB2, SUFU, PITX3, WBP1L, PSD, MIR146B, FBXW4, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, TRIM8, ELOVL3, GBF1, LDB1, NOLC1) 0.440122339456183 33 0.0437978526179012 0.90646815650173 2213 0.500748288148544 4 2 2 -6.87634377648631 LTS-027 chr10 104593939 124274439 19680501 * c(MIR936, MIR1307, MIR2110, MIR4295, MIR3941, MIR3663, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4680, MIR4483, MIR4682, MIR4482, MIR4681, SMNDC1, TACC2, PRDX3, VAX1, ATE1, SEC23IP, SORCS1, BTBD16, PDZD8, BORCS7, GSTO2, SFR1, CALHM3, PNLIPRP3, SFXN4, ADD3, COL17A1, TRUB1, VTI1A, C10orf82, CACUL1, ADRA2A, ADRB1, CYP17A1, CFAP58, DUSP5, EMX2OS, PLPP4, EMX2, FGFR2, RAB11FIP2, INPP5F, NT5C2, PDCD11, SORCS3, NA NA NA NA NA NA NA NA NA LTS-027 CALHM1, CASC2, HSPA12A, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, WDR11-AS1, PRLHR, GRK5, HABP2, KCNK18, VWA2, NANOS1, NHLRC2, CCDC172, ENO4, ARMS2, GUCY2GP, ABLIM1, MXI1, NRAP, CALHM2, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, NSMCE4A, CNNM2, CCDC186, WDR11, TDRD1, HTRA1, AS3MT, GPAM, SHTN1, FAM160B1, PLEKHA1, RGS10, FAM204A, SNORA19, ZDHHC6, RPL13AP6, SLC18A2, TAF5, MIR609, TCF7L2, TECTB, TIAL1, RPEL1, XPNPEP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 MCMBP, PLEKHS1, OBFC1, CFAP43, SHOC2, CASP7, PCGF6, AFAP1L2, USMG5, ITPRIP, EIF3A, INA, SMC3, NEURL1, BBIP1, GSTO1, BAG3, SH3PXD2A, SLK, DCLRE1A) 0.436283542715809 230 0.0665575897902422 0.72408575200815 11254 0.427830189336745 2 1 1 -6.79084876010949 LTS-027 NA NA NA NA LTS-027 chr10 124274440 124320138 45699 * character(0) NA 0 NA 0.237 1 NA NA NA NA NA LTS-027 chr10 124320139 124605363 285225 * c(FAM24B-CUZD1, DMBT1, DMBT1P1, C10orf120, CUZD1) 0.393171923902405 4 0.059027535947217 0.514256160231872 267 0.253802273625757 2 1 1 -7.19158106435451 LTS-027 chr10 124605364 124605467 104 * FAM24B-CUZD1 NA 0 NA 0.991 1 NA NA NA NA NA LTS-027 chr10 124605468 134693137 10087670 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, C10orf90, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DOCK1, FAM24B, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, GPR26, HMX2, HMX3, ACADSB, INPP5A, TEX36, LINC00959, NKX1-2, LOC399815, METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CHST15, ZRANB1, CFAP46, DHX32, NA NA NA NA NA NA NA NA NA LTS-027 PPP2R2D, BCCIP, PTPRE, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.413368678924046 152 0.0739987270622384 0.77695073953668 5085 0.448915485262 2 1 1 -7.03470759972794 LTS-027 NA NA NA NA LTS-027 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.457 1 NA NA NA NA NA LTS-027 chr10 134694406 134756359 61954 * CFAP46 0.317053883012894 4 0.231584937621887 0.43742433828805 173 0.862415430470921 1 1 0 -6.73563188391267 LTS-027 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.756 1 NA NA NA NA NA LTS-027 chr10 134884462 135279049 394588 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1) 0.449855496817757 34 0.0420736664035187 0.825991909010976 1213 0.436188879176861 2 1 1 -6.91613261017407 LTS-027 chr10 135279050 135279265 216 * SCART1 NA 0 NA 0.616 1 NA NA NA NA NA LTS-027 chr10 135279266 135473058 193793 * c(CYP2E1, SPRNP1, FRG2B, SCART1, SYCE1) 0.411408007508834 25 0.0662069231022456 0.592153483403479 244 0.356749355918299 2 1 1 -6.79978012139401 LTS-027 chr10 135473059 135473116 58 * character(0) NA 0 NA 0.682 1 NA NA NA NA NA LTS-027 chr11 193025 193112 88 * SCGB1C1 0.448 1 NA 1.206 1 NA NA NA NA NA LTS-027 chr11 193113 1011829 818717 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.229019482617534 128 0.0716998730904114 0.831482812485683 3004 0.579774996456633 2 2 0 -6.78239794207481 LTS-027 chr11 1011830 1013167 1338 * c(AP2A2, MUC6) 0.232 1 NA 0.897305500286281 17 0.54600006060116 3 3 0 -5.7644101906565 LTS-027 chr11 1013168 1260219 247052 * c(MUC2, MUC6, MUC5B) 0.308616208709011 111 0.0976066576789699 0.868343119415337 899 0.537025722325916 4 3 1 -6.76979928851887 LTS-027 chr11 1260220 1260417 198 * MUC5B 0 1 NA 0.823192205791771 6 0.551547791824667 3 3 0 -5.76441333593275 LTS-027 chr11 1260418 4133360 2872943 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, TOLLIP-AS1, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, CHRNA10, MRPL23, MIR483, NA NA NA NA NA NA NA NA NA LTS-027 RRM1, TSSC2, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.20806455908312 117 0.0669524555168423 0.824431715201576 3445 0.484436623757161 2 2 0 -6.92938940486695 LTS-027 NA NA NA NA LTS-027 chr11 4133361 4729814 596454 * c(LOC100506082, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR52K1, OR52I1, OR51D1, TRIM68, RRM1, TRIM21, OR51E2) 0.220928404987783 25 0.0451691266242773 0.584433107400341 565 0.330661001685297 2 2 0 -6.84492905268393 LTS-027 chr11 4729815 4730883 1069 * character(0) NA 0 NA 0.418 1 NA NA NA NA NA LTS-027 chr11 4730884 5529889 799006 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR51T1, OR51A4, OR51A2, UBQLN3, MMP26, OR51G1, OR51B4, OR51B2, OR51G2) 0.22130899931803 57 0.0791960781667406 0.448429450864657 1022 0.26408511534838 1 1 0 -7.44536726514945 LTS-027 chr11 5529890 5529894 5 * c(HBG2, UBQLN3) NA 0 NA 0.625 1 NA NA NA NA NA LTS-027 chr11 5529895 5732092 202198 * c(TRIM22, TRIM6, UBQLNL, HBG2, OR52B6, OR52H1, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM5) 0.243237291558406 20 0.102234650115362 0.703713018357931 483 0.531518168687832 2 2 0 -6.76365730977089 LTS-027 chr11 5732093 5755335 23243 * c(TRIM22, TRIM5) NA 0 NA 0.273 1 NA NA NA NA NA LTS-027 chr11 5755336 6220610 465275 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR56B1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.22281574000673 21 0.101244705916855 0.439011851231449 469 0.270518626684431 1 1 0 -7.18619534861502 LTS-027 chr11 6220611 6735905 515295 * c(TRIM3, PRKCDBP, TPP1, OR52W1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, GVINP1, MRPL17, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.209191220457744 25 0.0738524881097448 0.721588401492956 1929 0.348030917672992 2 2 0 -6.74755852785087 LTS-027 chr11 6735906 6978312 242407 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, OR2AG2, OR10A2, GVINP1, ZNF215, OR6A2) 0.300729796188951 3 0.0673226064062684 0.403461582456251 357 0.179344586192985 1 1 0 -6.96324018177233 LTS-027 chr11 6978313 7981941 1003629 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, RBMXL2, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, OR10A6, CYB5R2, ZNF214, ZNF215, PPFIBP2) 0.203206567821077 28 0.067748084179945 0.581545466290761 898 0.338456342548164 2 2 0 -6.95668508734953 LTS-027 chr11 7981942 12380163 4398222 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, NLRP10, GALNT18, LMO1, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, USP47, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, RPL27A, SNORA3A, LOC644656, STK33, ST5, SNORA23, SNORA3B, SNORD97, TUB, ZBED5-AS1, WEE1, ZNF143, RIC3, SBF2, MICALCL, EIF3F, MICAL2, CTR9, TRIM66 NA NA NA NA NA NA NA NA NA LTS-027 ) 0.211012644694591 66 0.0657175562752998 0.774525063470049 4245 0.954938323979817 2 2 0 -6.77051715604716 LTS-027 NA NA NA NA LTS-027 chr11 12380164 12960082 579919 * c(PARVA, TEAD1, MICALCL) 0.456 1 NA 0.865138903841486 263 0.416232458762823 3 3 0 -5.76779558643346 LTS-027 chr11 12960083 15096629 2136547 * c(LINC00958, SPON1, CYP2R1, COPB1, RRAS2, ARNTL, PDE3B, PSMA1, PTH, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10) 0.344136502307877 19 0.109516027292438 0.810758429635216 1099 0.511346545634023 3 2 1 -6.87519986839437 LTS-027 chr11 15096630 17663444 2566815 * c(USH1C, OR7E14P, C11orf58, PLEKHA7, OTOG, NCR3LG1, KCNJ11, INSC, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8, CALCB) 0.367724285638779 48 0.063360638244287 1.04303132286357 1878 0.657592256311188 3 2 1 -6.8589997069184 LTS-027 chr11 17663445 17663453 9 * OTOG NA 0 NA 0.602 1 NA NA NA NA NA LTS-027 chr11 17663454 36511059 18847606 * c(LOC100126784, C11orf91, CCDC179, SPTY2D1-AS1, DCDC5, SAA2-SAA4, MIR4486, MIR3973, MIR4694, MIR1343, NAV2-AS5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, DBX1, DNAJC24, ARL14EP, LDLRAD3, MUC15, SPTY2D1, TMEM86A, CSTF3, SLC5A12, LDHAL6A, METTL15, IMMP1L, ELF5, ANO5, FANCF, FJX1, FSHB, KIAA1549L, SVIP, ABTB2, PAMR1, MRGPRX1, GAS2, FBXO3, SERGEF, EHF, ELP4, LINC00294, NA NA NA NA NA NA NA NA NA LTS-027 IGSF22, COMMD9, GTF2H1, LUZP2, CSTF3-AS1, OTOG, DCDC1, KCNA4, KCNC1, FIBIN, LDHA, LDHC, NAV2-AS4, LMO2, CAPRIN1, DKFZp686K1684, MYOD1, NELL1, CCDC73, LOC494141, BDNF-AS, PAX6, APIP, WT1-AS, ZDHHC13, TRIM44, NAT10, UEVLD, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, SAA1, SAA2, SAA3P, SAA4, ANO3, SLC1A2, MIR610, TPH1, TRAF6, TSG101, MPPED2, WT1, PRRG4, E2F8, QSER1, PRR5L, CSRP3, PDHX, KIF18A, BBOX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CAT, PTPN5, NAV2, CCDC34, SLC6A5, DEPDC7, CD44, CD59) 0.368648748279853 229 0.0810897893323293 0.883988810195836 9989 0.557073140134002 3 2 1 -6.77513385436274 LTS-027 NA NA NA NA LTS-027 chr11 36511060 43515872 7004813 * c(LOC100507205, C11orf74, HNRNPKP3, TTC17, LRRC4C, RAG1, RAG2, TRAF6, API5) 0.353122753715324 8 0.0895556490999551 0.713052974090284 645 0.384574096911395 2 1 1 -7.13431581409041 LTS-027 chr11 43515873 43515875 3 * TTC17 NA 0 NA 1.029 1 NA NA NA NA NA LTS-027 chr11 43515876 47813514 4297639 * c(MIR670, MIR3160-2, MIR3160-1, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, FAM180B, LRP4, MIR129-2, MDK, MYBPC3, NDUFS3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, RAPSN, ALX4, NA NA NA NA NA NA NA NA NA LTS-027 SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, AGBL2, ARFGAP2, ACCS, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.385878064330026 92 0.0591724503632187 1.03380432517908 5057 0.508775720304444 3 2 1 -6.91454134648393 LTS-027 NA NA NA NA LTS-027 chr11 47813515 49402791 1589277 * c(OR4X2, OR4B1, NUP160, FOLH1, OR4C3, OR4S1, TRIM49B, OR4X1, OR4A47, OR4C45, PTPRJ, TRIM64C) 0.375130967920685 151 0.0715250585150756 0.801187076332395 968 0.605128846398895 3 2 1 -6.78355480625163 LTS-027 chr11 49402792 49403246 455 * character(0) NA 0 NA 0.569 1 NA NA NA NA NA LTS-027 chr11 49403247 51516257 2113011 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) 0.343187162514231 11 0.0678304034807669 0.581420460397384 186 0.53544075628155 1 1 0 -6.99517150810862 LTS-027 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.506098133397003 6 0.202331081810647 1 NA NA -5.76441071731427 LTS-027 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.447 1 NA 0.403201375489685 17 0.215039274798541 1 1 0 -5.81562420516764 LTS-027 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.407238574423428 8 0.0542928566729942 0.61345586320231 79 0.493225331388739 2 1 1 -6.83385443597075 LTS-027 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.24 1 NA NA NA NA NA LTS-027 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.186020166830055 67 0.0559724321560659 0 NA NA -7.54331174984416 LTS-027 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.739 1 NA NA NA NA NA LTS-027 chr11 55432533 56854968 1422436 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51) 0.386170808271 50 0.0898484188360983 0.554805076850778 1012 0.361352681096383 2 1 1 -7.2133849255262 LTS-027 chr11 56854969 56949188 94220 * character(0) NA 0 NA 0.978 1 NA NA NA NA NA LTS-027 chr11 56949189 57596665 647477 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, APLNR, LRRC55, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.388112756119248 15 0.0675571715554421 1.01875496990502 1590 0.55194362403039 3 2 1 -6.75250476957333 LTS-027 chr11 57596666 57798344 201679 * OR9Q1 NA 0 NA 0.3 1 NA NA NA NA NA LTS-027 chr11 57798345 58274644 476300 * c(OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B2, OR5B12, OR5B3, OR10W1) 0.443548327691175 3 0.0571168393149808 0.569385218279565 329 0.247591734565157 2 1 1 -6.97827516989466 LTS-027 chr11 58274645 58980455 705811 * c(GLYAT, CNTF, OR5B21, GLYATL2, MPEG1, DTX4, LOC283194, FAM111B, ZFP91-CNTF, FAM111A, ZFP91, GLYATL1, LPXN) 0.324870349421328 7 0.171984910744546 0.843370078740353 802 0.458692106127857 3 2 1 -6.8174906312676 LTS-027 chr11 58980456 59056111 75656 * MPEG1 NA 0 NA 0.495 1 NA NA NA NA NA LTS-027 chr11 59056112 59282846 226735 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) 0.321174104034911 5 0.0545921239740679 0.57455985722244 153 0.288014892277074 1 1 0 -6.8080661954732 LTS-027 chr11 59282847 59612785 329939 * c(MIR3162, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, OR10V2P) NA 0 NA 1.01546285553726 482 0.516114367197097 4 NA NA -5.76900779006035 LTS-027 chr11 59612786 60511426 898641 * c(OOSP2, MS4A2, MS4A6E, GIF, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, MS4A8, MS4A14, MS4A1, MS4A3) 0.381725647031702 23 0.104829939452113 0.697366677804357 849 0.485518864642737 2 1 1 -6.85006807690833 LTS-027 chr11 60511427 60511508 82 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-027 chr11 60511509 61730036 1218528 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, TKFC, DKFZP434K028, PRPF19, MS4A10, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, SYT7, CD5, CD6, FADS2) 0.384588914410786 41 0.0499864493833201 1.03729718120157 3019 0.569319239497213 3 2 1 -6.77787072192773 LTS-027 chr11 61730037 61908440 178404 * c(FTH1, INCENP, BEST1) 0.219 1 NA 0.867171557955542 125 0.539671800861562 3 3 0 -5.76496114764338 LTS-027 chr11 61908441 61919793 11353 * INCENP 0.236 1 NA 1.0194406396313 63 0.516591893405033 4 4 0 -5.76455283643754 LTS-027 chr11 61919794 62284060 364267 * c(SCGB1D2, SCGB1D1, INCENP, SCGB1D4, SCGB2A1, SCGB2A2, SCGB1A1, AHNAK, ASRGL1) 0.147259254057082 3 0.118119995484818 0.724590715615227 235 0.420009020460983 3 3 0 -6.81764586154543 LTS-027 chr11 62284061 62300269 16209 * AHNAK 0.269 1 NA 0.494795467326207 265 0.158565184284692 1 1 0 -5.76464134168535 LTS-027 chr11 62300270 62760374 460105 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, TUT1, SLC3A2, STX5, SNORA57, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.19507075503413 6 0.0738089877092666 0.842317297322143 1960 0.518460190188811 3 3 0 -6.79601030565416 LTS-027 chr11 62760375 63312799 552425 * c(SLC22A9, HRASLS5, SLC22A24, SLC22A25, SLC22A10, RARRES3, LGALS12, SLC22A8) 0.189921659047404 15 0.0601840035700043 0.567012386831368 597 0.298743506931421 2 2 0 -7.04957589179733 LTS-027 chr11 63312800 73685908 10373109 * c(NAALADL1, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1237, MIR548K, MIR3165, MIR3664, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, STARD10, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CDCA5, BATF2, SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, COX8A, NA NA NA NA NA NA NA NA NA LTS-027 CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, DHCR7, MARK2, CTTN, ESRRA, FAU, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, ALDH3B2, FGF3, FGF4, FKBP2, SHANK2, KDM2A, ATG2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, POLA2, FLRT1, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ANAPC15, ATL3, PPP1R14B, MYEOV, NPAS4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 MAJIN, SLC25A45, NEAT1, CCDC88B, RCOR2, ALG1L9P, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INPPL1, TBC1D10C, DNAJB13, MALAT1, KRTAP5-9, KRTAP5-10, SPDYC, GPR152, DOC2GP, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, KCNK4, PC, GAL, KMT5B, COA4, PDE2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CABP2, TRMT112, MRPL48, PLCB3, C11orf24, SSH3, HRASLS2, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, RAB6A, MAP4K2, RAD9A, RARRES3, RBM4, CCND1, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, C11orf95, SPTBN2, TM7SF2, UCP2, VPS51, MRPL49, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, NAA40, TMEM134, MUS81, PAAF1, FOSL1, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, RELT, PPFIA1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, NRXN2, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.21096281169834 258 0.0621684763302132 0.844766043674898 18227 0.455677042549292 3 3 0 -7.08403230287682 LTS-027 NA NA NA NA LTS-027 chr11 73685909 73685969 61 * UCP2 NA 0 NA 0.701 1 NA NA NA NA NA LTS-027 chr11 73685970 82641317 8955348 * c(KCNE3, MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, PPME1, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, SNORD15A, RPS3, KCTD14, THRSP, NA NA NA NA NA NA NA NA NA LTS-027 CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.215613856384689 109 0.0713446871888731 0.763312783348359 5843 0.441527277675635 2 2 0 -6.9091680836015 LTS-027 NA NA NA NA LTS-027 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.246 1 NA NA NA NA NA LTS-027 chr11 82642812 82668550 25739 * DDIAS 0.181869168140939 2 0.0240416305603426 0.254710578526488 63 0.127951203576488 3 3 0 -8.05412658156856 LTS-027 chr11 82668551 82668624 74 * DDIAS NA 0 NA 0.589 1 NA NA NA NA NA LTS-027 chr11 82668625 88241831 5573207 * c(SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, DDIAS, CCDC83, CCDC89, RAB38, RAB30, GRM5, ANKRD42, HIKESHI, PCF11, SYTL2, TMEM126B, CREBZF, CCDC90B, CCDC81, TMEM135, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.247487843816985 58 0.0885233229459002 0.655138145305017 2712 0.414437646850303 2 2 0 -6.88995149272999 LTS-027 chr11 88241832 92565150 4323319 * c(NAALAD2, MIR4490, GRM5-AS1, FAT3, TRIM64, FOLH1B, CHORDC1, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.220382701384225 4 0.055114275222789 0.525656224841828 1053 0.371001562442434 1 1 0 -7.92582710307621 LTS-027 chr11 92565151 102207692 9642542 * c(MIR1304, MIR1260B, MIR3920, JRKL-AS1, LOC101054525, YAP1, GPR83, SLC36A4, FAT3, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, ANGPTL5, C11orf54, BIRC3, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, MTNR1B, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, CEP126, SCARNA9, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TAF1D, CCDC82, TMEM133, MAML2, C11orf70, CEP295, JRKL, MTMR2, MED17, NA NA NA NA NA NA NA NA NA LTS-027 CEP57) 0.227139957413313 72 0.0900925927802359 0.680062408934874 4659 0.365643731394603 2 2 0 -6.78900339223146 LTS-027 NA NA NA NA LTS-027 chr11 102207693 106810853 4603161 * c(WTAPP1, CASP12, MIR4693, CARD16, TMEM123, KBTBD3, GRIA4, GUCY1A2, BIRC2, BIRC3, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, CARD18, AASDHPPT, MMP27, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, DCUN1D5, MSANTD4, MMP20) 0.211867420208202 47 0.0783815415129975 0.594963978965515 2408 0.349153397007841 2 2 0 -7.32300809132864 LTS-027 chr11 106810854 106849343 38490 * GUCY1A2 NA 0 NA 0.892 1 NA NA NA NA NA LTS-027 chr11 106849344 114310478 7461135 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, RBM7, COLCA2, PIH1D2, CRYAB, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, DLAT, DRD2, FDX1, EXPH5, SIK2, ANKK1, REXO2, TIMM8B, GUCY1A2, HSPB2, HTR3A, C11orf53, PLET1, IL18, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, ATM, NNMT, NPAT, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, TTC12, PPP2R1B, C11orf57, ELMOD1, TEX12, ARHGAP20, USP28, NA NA NA NA NA NA NA NA NA LTS-027 PTS, RDX, SDHD, LOC643923, CLDN25, C11orf1, SLN, ZBTB16, ALG9, CUL5, TMPRSS5, BCO2, DIXDC1, ZC3H12C, HTR3B, ALKBH8, ZW10, FDXACB1) 0.211234057511828 109 0.0772607934677835 0.73404043047373 5795 0.438666752997513 2 2 0 -6.78062105061804 LTS-027 NA NA NA NA LTS-027 chr11 114310479 114310799 321 * REXO2 NA 0 NA 0.495 1 NA NA NA NA NA LTS-027 chr11 114310800 114578494 267695 * c(NXPE1, NXPE2, REXO2, NXPE4) 0.407970109739296 16 0.157619571014093 0.449952529241274 233 0.25418560111951 1 1 0 -7.0120665849657 LTS-027 chr11 114578495 114578652 158 * character(0) NA 0 NA 0.946 1 NA NA NA NA NA LTS-027 chr11 114578653 118657271 4078619 * c(LOC100131626, BACE1-AS, TMPRSS4-AS1, FXYD6-FXYD2, LOC100652768, MPZL2, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, RNF214, LINC00900, APOA1, APOA4, APOC3, IL10RA, ARCN1, KMT2A, FXYD2, PAFAH1B2, SIDT2, FXYD6, TMPRSS4, IFT46, DSCAML1, SCN2B, SCN4B, TAGLN, TMPRSS13, BUD13, TMEM25, ZPR1, CD3D, PCSK7, CD3E, CD3G, UBE4A) 0.22695345446855 74 0.0661561336871752 0.80382515064361 4445 0.52167021446745 2 2 0 -6.89286725674399 LTS-027 chr11 118657272 118754349 97078 * DDX6 NA 0 NA 3.773 1 NA NA NA NA NA LTS-027 chr11 118754350 118827073 72724 * c(MIR4492, BCL9L, CXCR5, UPK2) 0.106674227715137 7 0.0164287784666043 1.44429493037991 299 0.835833041530263 6 6 0 -6.75069309871069 LTS-027 chr11 118827074 120858363 2031290 * c(USP2-AS1, MIR3656, HYOU1, DPAGT1, TMEM136, OAF, ARHGEF12, TRIM29, SLC37A4, POU2F3, HINFP, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, CCDC84, MCAM, TRAPPC4, VPS11, NECTIN1, RPS25, ABCG4, LOC649133, RPL23AP64, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, CBL, USP2, C2CD2L) 0.209321698224582 76 0.0640548503990847 0.810813801872465 3222 0.454051636162224 2 2 0 -6.86509810026447 LTS-027 chr11 120858364 123601416 2743053 * c(MIR4493, TBCEL, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.199433144549219 23 0.102270025436424 0.718570556037824 1775 0.42786493161873 2 2 0 -6.76103906540742 LTS-027 chr11 123601417 124441071 839655 * c(OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A, ZNF202) 0.214903016332303 17 0.0674344452914436 0.497768873338548 718 0.279870344997141 2 2 0 -7.42536308705405 LTS-027 chr11 124441072 124441179 108 * character(0) NA 0 NA 1.496 1 NA NA NA NA NA LTS-027 chr11 124441180 128838519 4397340 * c(PATE3, MIR3167, SENCR, KIRREL3-AS2, CHEK1, TIRAP, PANX3, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, HEPACAM, FLI1, VSIG2, KIRREL3-AS3, DCPS, DDX25, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, ACRV1, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, FAM118B, MSANTD2, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, ESAM, EI24, FEZ1, ARHGAP32) 0.220882764113358 111 0.0735286547072844 0.765109616361675 3892 0.481180953463149 2 2 0 -6.81044757134532 LTS-027 chr11 128838520 129246112 407593 * c(BARX2, ARHGAP32) NA 0 NA 0.482733695625142 243 0.243269205762112 1 NA NA -5.77436787812524 LTS-027 chr11 129246113 129306073 59961 * BARX2 NA 0 NA 1.258 1 NA NA NA NA NA LTS-027 chr11 129306074 134251777 4945704 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, TMEM45B, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, ZBTB44, THYN1, APLP2, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, ST14, JAM3, BARX2, GLB1L2) 0.200286373139782 53 0.0613927788475966 0.751473922901276 2891 0.420019953403888 2 2 0 -6.8648652892146 LTS-027 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 0.660198677175788 39 0.221911928889674 2 NA NA -5.79497035156796 LTS-027 chr12 90923 90953 31 * LOC100288778 0.235 1 NA 2.258 1 NA NA NA NA NA LTS-027 chr12 90954 3950977 3860024 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, PRMT8, PARP11, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, CACNA2D4) 0.406318629560707 78 0.0698982515358258 1.4393278481617 3880 0.679052690198072 5 3 2 -6.79102728059849 LTS-027 chr12 3950978 3951352 375 * PARP11 NA 0 NA 1.28235774618837 5 0.0781293798772267 5 NA NA -5.76441411715057 LTS-027 chr12 3951353 3951456 104 * PARP11 NA 0 NA 0.788 1 NA NA NA NA NA LTS-027 chr12 3951457 3952376 920 * PARP11 0.221 1 NA 0.453834999140114 13 0.20818627630328 1 1 0 -5.76456648759551 LTS-027 chr12 3952377 3955414 3038 * PARP11 0.377125006470146 3 0.11422054689649 0.658496372515289 42 0.317367005992196 3 2 1 -6.73867237356575 LTS-027 chr12 3955415 3982370 26956 * PARP11 NA 0 NA 3.216 1 NA NA NA NA NA LTS-027 chr12 3982371 4414387 432017 * c(PARP11, CCND2) 0.400840447984921 3 0.0598080262172227 1.64971463260995 159 1.31361461651418 10 6 4 -6.75091726051624 LTS-027 chr12 4414388 5603770 1189383 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, C12orf4, TIGAR, FGF23, DYRK4, CCND2) 0.387564755591215 35 0.0749361857367528 0.810297156545135 945 0.45539503310929 3 2 1 -6.77202327310659 LTS-027 chr12 5603771 7355396 1751626 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ANO2, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, NA NA NA NA NA NA NA NA NA LTS-027 CLSTN3, NCAPD2) 0.396900715190266 62 0.0585620865398836 1.08485895744235 4104 0.59982183911599 3 2 1 -6.851270987612 LTS-027 NA NA NA NA LTS-027 chr12 7355397 7355926 530 * PEX5 NA 0 NA 0.642 1 NA NA NA NA NA LTS-027 chr12 7355927 8074099 718173 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, SLC2A3, NANOG, CD163, GDF3) 0.376991342542781 21 0.0628600865111596 0.705106856275077 821 0.500165637437535 3 2 1 -6.84827391790104 LTS-027 chr12 8074100 8074192 93 * SLC2A3 0.273 1 NA 1.484 1 NA NA NA NA NA LTS-027 chr12 8074193 9090511 1016319 * c(A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.386764923724028 12 0.0646957330802262 0.892968147335893 1110 0.545380366837345 3 2 1 -6.73324366965969 LTS-027 chr12 9090512 9093782 3271 * c(PHC1, M6PR) NA 0 NA 0.289597618714157 48 0.195471795819737 0 NA NA -5.76464495391355 LTS-027 chr12 9093783 11215070 2121288 * c(KLRF2, LINC00987, KLRC4-KLRK1, PRH1-PRR4, KLRG1, KLRA1P, PRR4, TMEM52B, A2M-AS1, CLEC12A, CLECL1, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, A2MP1, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, M6PR, DDX12P, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, PZP, NA NA NA NA NA NA NA NA NA LTS-027 LOC642846, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.369814587931562 100 0.102022249009367 0.695406311859121 2721 0.470410754057409 2 1 1 -6.92576916876274 LTS-027 NA NA NA NA LTS-027 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.02 1 NA NA NA NA NA LTS-027 chr12 11243803 11286012 42210 * c(PRH1-PRR4, TAS2R43, TAS2R30, PRB4) 0.207 1 NA 0.223300111276358 39 0.46602048717512 0 0 0 -5.77689928657805 LTS-027 chr12 11286013 11286085 73 * c(PRH1-PRR4, TAS2R30, PRB4) NA 0 NA 0.372 1 NA NA NA NA NA LTS-027 chr12 11286086 32890912 21604827 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, TAS2R30, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, NA NA NA NA NA NA NA NA NA LTS-027 GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.373681369459717 245 0.0735919311601725 0.865357373045078 11618 0.515378263417499 3 2 1 -6.83080859361222 LTS-027 NA NA NA NA LTS-027 chr12 32890913 34182671 1291759 * c(DNM1L, SYT10, YARS2, PKP2, ALG10) NA 0 NA 0.857376352509175 407 0.488105655764617 3 NA NA -5.77255848443274 LTS-027 chr12 38710341 39726376 1016036 * c(ALG10B, CPNE8, KIF21A) 0.219 1 NA 0.677437059842783 307 0.425618383767726 2 2 0 -5.76946731077564 LTS-027 chr12 39726377 41968434 2242058 * c(SLC2A13, LRRK2, CNTN1, ABCD2, C12orf40, PDZRN4, KIF21A) 0.360027875718597 63 0.08582067897711 0.725199283158404 1843 0.407381102953997 2 1 1 -7.09887667262643 LTS-027 chr12 42475690 44181920 1706231 * c(YAF2, PRICKLE1, GXYLT1, IRAK4, PPHLN1, ADAMTS20, PUS7L, ZCRB1) 0.36552550981434 19 0.0931097886827052 0.938014233405361 964 0.554926071087196 3 2 1 -6.76798208314026 LTS-027 chr12 44181921 44187493 5573 * IRAK4 NA 0 NA 0.528 1 NA NA NA NA NA LTS-027 chr12 44187494 44189387 1894 * TWF1 0.365 1 NA 0.378183292267942 47 0.158731036948219 0 0 0 -5.76619947840347 LTS-027 chr12 44189388 47158968 2969581 * c(ANO6, ARID2, LINC00938, DBX2, NELL2, PLEKHA8P1, SLC38A2, SLC38A4, TWF1, RNY5, SLC38A1, RACGAP1P, TMEM117, SCAF11) 0.374341701325069 27 0.158001821187528 1.12681720780001 1355 0.78734150241036 4 2 2 -6.80439416256094 LTS-027 chr12 47158969 47158979 11 * SLC38A4 NA 0 NA 0.808 1 NA NA NA NA NA LTS-027 chr12 47158980 47173662 14683 * SLC38A4 0.382601705393004 4 0.045850299889968 0.746386740097768 75 0.319773090721451 3 2 1 -6.73997353830535 LTS-027 chr12 47173663 47178307 4645 * SLC38A4 0.467 1 NA 0.910375895475406 5 0.816328794052985 3 3 0 -5.76441054438801 LTS-027 chr12 47178308 47472553 294246 * c(AMIGO2, SLC38A4) NA 0 NA 0.722411964170794 90 0.284870686215989 2 NA NA -5.76582412341742 LTS-027 chr12 47472554 54813255 7340702 * c(HOTAIR, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TUBA1B, RAPGEF3, MCRS1, ATF7, ADCY6, GALNT6, KRT71, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, KRT74, COL2A1, ASB8, KRT72, BCDIN3D, KRT80, GRASP, KRT78, EIF4B, CELA1, COPZ1, FAIM2, DDN, TNS2, KCNH3, CBX5, ANP32D, SMUG1, LINC00935, PRPF40B, METTL7A, NA NA NA NA NA NA NA NA NA LTS-027 LETMD1, ZNF385A, AMHR2, RND1, GPD1, LOC283332, LOC283335, ZNF740, C12orf80, LINC00592, TMPRSS12, KRT6C, RACGAP1, SENP1, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, AQP6, ITGA5, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 KRT84, KRT85, KRT86, LALBA, LOC400043, FIGNL2, MIR196A2, ASIC1, FLJ12825, MIR148B, ATF1, NFE2, SLC11A2, DHH, PCBP2, FKBP11, KRT76, CSAD, BIN2, LIMA1, HDAC7, ATP5G2, PFDN5, PFKM, GPR84, PRR13, POU6F1, KANSL2, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, CALCOCO1, NCKAP5L, RARG, C12orf10, ATG101, HIGD1C, SCN8A, SPATS2, SMARCD1, SP1, SNORA2A, SNORA2B, SNORA2C, TARBP2, MIR615, TMBIM6, TFCP2, VDR, WNT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, AAAS, CSRNP2, FAM186B, SOAT2, TUBA1C, SPRYD3, MFSD5, COX14, CCDC65, NPFF, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, ACVRL1, DDX23, SLC4A8, ESPL1, DAZAP2) 0.440765341835627 271 0.0854632919976531 1.25487390657109 14632 1.06785685704212 5 3 2 -6.80744082861358 LTS-027 NA NA NA NA LTS-027 chr12 54813256 54852745 39490 * GTSF1 NA 0 NA 0.589 1 NA NA NA NA NA LTS-027 chr12 54852746 54937360 84615 * c(GTSF1, NCKAP1L) 0.426743125089168 3 0.00793725393319378 0.861658729512682 221 0.391874384985251 2 1 1 -6.77361160493742 LTS-027 chr12 54937361 54937478 118 * character(0) 0 1 NA 1.92911823431736 3 2.60379921140885 8 8 0 -5.76441013961891 LTS-027 chr12 54937479 55040964 103486 * c(DCD, PDE1B, PPP1R1A, GLYCAM1, LACRT) 0.415542395658988 4 0.0473171920834982 0.986946713516288 230 0.446776784361741 5 3 2 -6.76079462443817 LTS-027 chr12 55040965 56031672 990708 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.340432750207108 16 0.105960920469136 0.559876957017525 644 0.323100572315446 1 1 0 -6.85324340662282 LTS-027 chr12 56031673 58191323 2159651 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, TSFM, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MARS, METTL1, MIP, MMP19, MYL6, MYO1A, NA NA NA NA NA NA NA NA NA LTS-027 NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.367681309038471 90 0.086651157500231 1.00210717996311 7798 0.512182253169998 3 2 1 -6.81546310368039 LTS-027 NA NA NA NA LTS-027 chr12 58191324 63544209 5352886 * c(LOC100506844, TSFM, CTDSP2, AVIL, LRIG3, MON2, LINC01465, FAM19A2, MIRLET7I, MIR26A2, AVPR1A, PPM1H, ATP23, SLC16A7, USP15) 0.356904084024958 39 0.086087658931132 0.849856141502956 1412 0.516957700657129 3 2 1 -6.84352652343534 LTS-027 chr12 63544210 63544821 612 * AVPR1A NA 0 NA 0.798334040816678 15 0.395248902892968 3 NA NA -5.7644447373888 LTS-027 chr12 63544822 63952764 407943 * c(DPY19L2, AVPR1A) NA 0 NA 0.454 1 NA NA NA NA NA LTS-027 chr12 63952765 63952989 225 * DPY19L2 0.121 1 NA 0.323490807174168 5 0.129246663399873 0 0 0 -5.76442504758728 LTS-027 chr12 63952990 63974634 21645 * DPY19L2 0.298772835230074 7 0.116458658105008 0.258109565052908 50 0.087177510674181 1 1 0 -7.42755778338973 LTS-027 chr12 63974635 63976198 1564 * DPY19L2 NA 0 NA 0.743 1 NA NA NA NA NA LTS-027 chr12 63976199 66583138 2606940 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, FLJ41278, TMBIM4, SRGAP1, MIR548C, HMGA2, LLPH) 0.204879474615596 23 0.0730248482264635 0.775880993048792 2130 0.479958221062078 2 2 0 -6.82200434511133 LTS-027 chr12 66583139 71551648 4968510 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, RAB3IP, CPM, BEST3, GRIP1, KCNMB4, IFNG, LRRC10, LYZ, MDM2, CNOT2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, PTPRB, PTPRR, RAP1B, TSPAN8, YEATS4, DYRK2, HELB) 0.231067754807321 74 0.0806525955561076 0.649859962811212 3478 0.410810804040545 2 2 0 -6.85604980811974 LTS-027 chr12 71551649 71833530 281882 * TSPAN8 NA 0 NA 2.026 1 NA NA NA NA NA LTS-027 chr12 71833531 72319037 485507 * c(ZFC3H1, RAB21, TMEM19, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.17045260969008 12 0.0563121710295439 0.914260453659779 844 0.534537046499003 3 3 0 -6.73366309529362 LTS-027 chr12 72319038 93226584 20907547 * c(MIR1252, LOC100507377, POC1B-GALNT4, MIR4699, MIR548AL, GLIPR1, KERA, KRR1, OSBPL8, TPH2, GLIPR1L2, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, PHLDA1, ZDHHC17, LINC01619, GLIPR1L1, MGAT4C, POC1B, OTOGL, TRHDE-AS1, CCDC59, TRHDE, LINC00936, C12orf74, PTPRQ, KCNC2, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, NAP1L1, ATP2B1, NTS, PAWR, SLC6A15, ATXN7L3B, CLLU1OS, NA NA NA NA NA NA NA NA NA LTS-027 CLLU1, TBC1D15, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, BBS10, CEP290, ALX1, EEA1, LRRIQ1, METTL25, CAPS2, PPFIA2, GALNT4, LIN7A, NAV3, C12orf29, RASSF9) 0.247215948585672 58 0.0946014612948915 0.613722741721093 6658 0.35943774836757 2 2 0 -8.21517789649232 LTS-027 NA NA NA NA LTS-027 chr12 93226585 93229029 2445 * EEA1 NA 0 NA 3.212 1 NA NA NA NA NA LTS-027 chr12 93229030 93793115 564086 * c(NUDT4, LOC643339, EEA1) 0.234 1 NA 0.972652390887301 133 0.628942865668443 3 3 0 -5.7693569132481 LTS-027 chr12 93793116 93795578 2463 * NUDT4 0.312 1 NA 0.393143691712791 57 0.350574175469708 0 0 0 -5.76509120696961 LTS-027 chr12 93795579 108961828 15166250 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, MIR5700, PLXNC1, CKAP4, METAP2, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, FAM71C, RMST, ELK3, UHRF1BP1L, KIAA1033, ISCU, SLC17A8, TTC41P, TCP11L2, UTP20, GAS2L3, LINC00485, NA NA NA NA NA NA NA NA NA LTS-027 MRPL42, HCFC2, HAL, APAF1, IGF1, C12orf42, C12orf75, ARL1, LTA4H, MIR135A2, ASCL1, MIR331, MYBPC1, NFYB, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, TMCC3, NTN4, RFX4, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TDG, TMPO, NR2C1, HSP90B1, C12orf73, LOC728739, TXNRD1, UBE2N, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, CRADD, SOCS2, TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.238658598533579 213 0.0772871873447604 0.684816448798633 10862 0.42019235723202 2 2 0 -6.80748877781248 LTS-027 NA NA NA NA LTS-027 chr12 108961829 108961952 124 * ISCU NA 0 NA 0.997 1 NA NA NA NA NA LTS-027 chr12 108961953 123110903 14148951 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, MIR4497, ARPC3, CAMKK2, TRAFD1, ERP29, GCN1, SDS, RAB35, CIT, SDSL, IQCD, ALKBH2, FOXN4, SPPL3, COX6A1, TMEM120B, WDR66, RAD9B, FAM109A, LINC00934, PPTC7, CCDC63, CCDC60, DAO, DTX1, PLBD2, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, CUX2, MED13L, SIRT4, ISCU, CORO1C, LRRC43, TBX5-AS1, FBXW8, HSPB8, NA NA NA NA NA NA NA NA NA LTS-027 MORN3, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, IFT81, FAM216A, ACACB, HPD, MMAB, TMEM119, LINC01089, ACADS, IL31, CFAP73, TMEM233, C12orf76, MSI1, MVK, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, GPN3, GLTP, MAPKAPK5-AS1, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, VPS29, PLA2G1B, TPCN1, SSH1, RHOF, VSIG10, TESC, PPP1CC, SVOP, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PTPN11, PXN, TRPV4, RFC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, TBX5, TBX3, HNF1A, MIR620, UNG, DDX54, B3GNT4, TCTN1, C12orf49, NAA25, SLC8B1, RNF34, ACAD10, BRAP, KCTD10, TCHP, COQ5, HVCN1, RASAL1, SRRM4, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, OASL, DYNLL1, SRSF9, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, BICDL1, CABP1, KNTC1, MLEC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 GIT2, RBM19, RNF10) 0.224452384602267 241 0.0707799260052679 0.808681851647371 16121 0.448148759647959 2 2 0 -7.45124709838936 LTS-027 NA NA NA NA LTS-027 chr12 123110904 123185833 74930 * KNTC1 NA 0 NA 0.388 1 NA NA NA NA NA LTS-027 chr12 123185834 123201382 15549 * c(HCAR2, HCAR3) 0.223 1 NA 0.353743161287153 93 0.211135918016281 0 0 0 -5.76807924900226 LTS-027 chr12 123201383 124809404 1608022 * c(MIR4304, MIR3908, LOC100507091, ZNF664-FAM101A, MPHOSPH9, TMED2, SNRNP35, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, NCOR2) 0.231338965434538 72 0.0710436934368688 0.791414347045261 3019 0.405678596289485 2 2 0 -6.82688834570686 LTS-027 chr12 124809405 125612470 803066 * c(MIR5188, BRI3BP, DHX37, AACS, UBC, SCARB1, NCOR2) 0.210247737554074 27 0.0586831513359009 1.01615752608403 931 1.11652080904577 2 2 0 -6.80135155669307 LTS-027 chr12 125612471 131275427 5662957 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, AACS, TMEM132C, PIWIL1) 0.219688589045816 35 0.0894033725606036 0.648328344353032 1268 0.357392736244661 2 2 0 -6.90967669185483 LTS-027 chr12 131275428 131275431 4 * STX2 NA 0 NA 1.304 1 NA NA NA NA NA LTS-027 chr12 131275432 133584085 2308654 * c(LOC100130238, ZNF605, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.199797257290292 61 0.0815012353656079 0.880970434996744 2977 0.525069231340512 3 3 0 -6.80487093609652 LTS-027 chr12 133584086 133811705 227620 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.22192747877345 24 0.0577577242465882 0.611915666927258 694 0.397549750629872 2 2 0 -6.75065419934282 LTS-027 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.776484791543454 19 0.149183822398734 2 NA NA -5.76466785941249 LTS-027 chr13 19271620 19271676 57 * character(0) 0.237 1 NA 1.553 1 NA NA NA NA NA LTS-027 chr13 19271677 20797699 1526023 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, GJB6, GJA3, GJB2, ANKRD20A9P, LINC00442, MPHOSPH8, PSPC1, TUBA3C, ZMYM2, ZMYM5, TPTE2) 0.263364989655534 17 0.0845102673887478 0.647221406058982 784 0.437054163579178 2 2 0 -6.92039998640385 LTS-027 chr13 20797700 20977789 180090 * GJB6 NA 0 NA 1.181 1 NA NA NA NA NA LTS-027 chr13 20977790 23279371 2301582 * c(MIR4499, LINC00424, SAP18, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, LATS2, CRYL1, IL17D, XPO4, MIPEPP3, MRPL57, IFT88) 0.196963442740255 14 0.0667058492912753 0.799948114264867 1017 0.453522552120467 3 3 0 -6.91041564677974 LTS-027 chr13 23279372 23915458 636087 * c(SACS, SGCG, BASP1P1) 0.197820404072113 5 0.0572948514266334 0.48414184340281 319 0.19461075623992 2 2 0 -7.98142245801607 LTS-027 chr13 23915459 25448365 1532907 * c(MIR2276, SACS-AS1, LINC00327, SPATA13-AS1, PARP4, SPATA13, SACS, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, C1QTNF9B-AS1, TNFRSF19, RNF17) 0.226673714659534 46 0.0995614950889541 0.671002845378342 1125 0.541050525713863 2 2 0 -6.74298850322775 LTS-027 chr13 25448366 25744147 295782 * c(AMER2, PABPC3, CENPJ, RNF17, TPTE2P1) 0.281272347284343 9 0.111658457409688 0.478603834900306 417 0.283954126673121 1 1 0 -6.7682996719206 LTS-027 chr13 25744148 37622782 11878635 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, PDX1, RASL11A, SHISA2, SERTM1, NA NA NA NA NA NA NA NA NA LTS-027 SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.226082901171444 101 0.0841963593672141 0.672577812474221 6641 0.376822120452053 2 2 0 -6.84036351004973 LTS-027 NA NA NA NA LTS-027 chr13 37622783 37625581 2799 * SUPT20H NA 0 NA 0.355 1 NA NA NA NA NA LTS-027 chr13 37625582 39585605 1960024 * c(LINC00366, LINC00571, POSTN, CSNK1A1L, STOML3, FREM2, LINC00547, UFM1, SUPT20H, TRPC4, PROSER1) 0.209844786331292 23 0.0639906428436338 0.549349356903379 820 0.338328093192832 2 2 0 -7.32329349471212 LTS-027 chr13 39585606 39586174 569 * PROSER1 NA 0 NA 1.2 1 NA NA NA NA NA LTS-027 chr13 39586175 61989540 22403366 * c(LINC00462, TPT1-AS1, MIR1297, MIR759, MIR320D1, MIR4305, MIR3169, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, DIAPH3-AS1, DIAPH3-AS2, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, LHFP, TRIM13, MRPS31, DLEU1, OLFM4, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, NA NA NA NA NA NA NA NA NA LTS-027 LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, PCDH17, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, NHLRC3, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 THSD1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, PCDH20, SNORA31, MIR621, TPT1, PRR20B, PRR20D, PRR20E, NAA16, RNASEH2B, DHRS12, RUBCNL, PROSER1, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.217687375151171 126 0.0888459626508998 0.685711289524324 8296 0.689616804842448 2 2 0 -6.75346004015214 LTS-027 NA NA NA NA LTS-027 chr13 61989541 67799329 5809789 * c(PCDH9-AS2, PCDH9-AS3, OR7E156P, PCDH9, PCDH20) 0.151 1 NA 0.660583696730865 87 0.446377459864055 2 2 0 -5.83517048242696 LTS-027 chr13 67799330 70681427 2882098 * c(LINC00550, PCDH9, KLHL1, ATXN8OS) 0.176170274174237 6 0.0613470999042878 0.800262036103349 154 0.372007690223742 3 3 0 -6.90783832311586 LTS-027 chr13 70681428 102220179 31538752 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR548AN, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, DACH1, GPR180, DCT, NA NA NA NA NA NA NA NA NA LTS-027 COMMD6, CLYBL, GPR183, EDNRB, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, OXGR1, GPR18, UBAC2, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, MZT1, PCCA, POU4F1, NDFIP2, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, LMO7DN, ACOD1, UCHL3, ZIC2, RNF219, BORA, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, ITGBL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 TM9SF2, TBC1D4) 0.141508468096638 98 0.0699912929272644 1.05495697020428 7052 0.616581725592917 4 4 0 -6.81371587838544 LTS-027 NA NA NA NA LTS-027 chr13 102220180 103443624 1223445 * c(MIR2681, MIR4705, METTL21C, FGF14, FGF14-IT1, FGF14-AS2, CCDC168, TPP2, KDELC1, TEX30, ITGBL1) 0.143497376620677 13 0.0678869724294804 0.771958675018457 846 0.34875096906499 3 3 0 -6.97833100659001 LTS-027 chr13 103443625 103443701 77 * KDELC1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-027 chr13 103443702 109777738 6334037 * c(BIVM-ERCC5, MIR548AS, LINC00443, TNFSF13B, METTL21EP, LINC00343, EFNB2, ERCC5, MYO16, DAOA, DAOA-AS1, LINC00551, LIG4, BIVM, ARGLU1, SLC10A2, LINC00460, FAM155A, KDELC1, ABHD13) 0.127402271181768 20 0.0721909747967519 1.00666029484918 1084 0.594302923276505 4 4 0 -6.83565203508721 LTS-027 chr13 109777739 109779542 1804 * MYO16 NA 0 NA 1.876 1 NA NA NA NA NA LTS-027 chr13 109779543 115064542 5285000 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, UPF3A, SOX1, TFDP1, CARS2, GRTP1, CUL4A, IRS2, PROZ, ARHGEF7, CDC16) 0.131729448903995 114 0.0462052731065122 1.26883688331364 3933 0.736855862448816 5 5 0 -6.77634767847886 LTS-027 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.815572578034147 91 0.505182313589233 3 NA NA -5.76507569140118 LTS-027 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.222 1 NA 0.772171394327774 11 0.148975226738603 2 2 0 -5.93555048886907 LTS-027 chr14 20201973 20712010 510038 * c(OR4K14, OR4L1, OR11H6, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4Q3, OR4M1, OR4K5, OR4K1, OR4K15) 0.327019820473641 37 0.0769979817215308 0.753339333726289 490 0.427084106809248 4 3 1 -6.96747059977101 LTS-027 chr14 20712011 20754345 42335 * character(0) NA 0 NA 1.555 1 NA NA NA NA NA LTS-027 chr14 20754346 23303584 2549239 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, MRPL52, KLHL33, DAD1, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, OXA1L, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, ABHD4, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, RNASE7, RAB2B, RPPH1, NA NA NA NA NA NA NA NA NA LTS-027 SLC7A7, TMEM55B, TTC5, TOX4) 0.312706876059453 125 0.0817610696855724 1.08933908619121 4504 0.556663411960517 4 3 1 -6.73844784307096 LTS-027 NA NA NA NA LTS-027 chr14 23303585 23303632 48 * MRPL52 NA 0 NA 1.652 1 NA NA NA NA NA LTS-027 chr14 23303633 23901122 597490 * c(MIR208B, BCL2L2-PABPN1, MIR4707, EFS, PRMT5, CEBPE, CMTM5, MRPL52, PSMB11, REM2, ACIN1, SLC7A8, LRP10, MIR208A, MMP14, MYH6, MYH7, SLC22A17, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, BCL2L2, C14orf93, CDH24, IL25, PABPN1, AJUBA, PPP1R3E) 0.333798559294435 55 0.0793701340670292 1.30768388602184 2320 0.765293338349923 4 3 1 -6.76905723457982 LTS-027 chr14 23901123 23901670 548 * MYH7 NA 0 NA 0.796 1 NA NA NA NA NA LTS-027 chr14 23901671 24909172 1007502 * c(NEDD8-MDP1, DHRS2, IRF9, TM9SF1, DHRS4, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, NGDN, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, MYH7, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, DHRS4-AS1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, JPH4, ZFHX2, AP1G2, CARMIL3, CPNE6, REC8) 0.297194010957224 35 0.0615129691865972 1.14498547805178 3615 0.625590392775483 4 3 1 -6.81860275705498 LTS-027 chr14 24909173 31582368 6673196 * c(MIR4307, LINC00645, LOC100506071, MIR548AI, AP4S1, CMA1, CTSG, COCH, FOXG1, SCFD1, KHNYN, HECTD1, STXBP6, STRN3, GZMH, GZMB, LINC01551, NOVA1, G2E3, PRKD1, SDR39U1, MIR624) 0.314265530510863 23 0.117525138173783 0.959579371469775 1395 0.613846291975201 4 3 1 -6.92301392093136 LTS-027 chr14 31582369 31647448 65080 * HECTD1 0.485 1 NA 0.900332248538819 187 0.53655585614479 3 3 0 -5.76441032821586 LTS-027 chr14 31647449 32546753 899305 * c(DTD2, HECTD1, HEATR5A, GPR33, ARHGAP5, NUBPL, ARHGAP5-AS1) 0.346808053695795 11 0.140814384595789 0.918224800507202 472 0.471503625039571 3 2 1 -6.78065754730715 LTS-027 chr14 32546754 32559744 12991 * ARHGAP5 NA 0 NA 0.492 1 NA NA NA NA NA LTS-027 chr14 32559745 33299285 739541 * c(ARHGAP5, AKAP6) 0.411081984148878 8 0.0533638119756397 0.647767393102098 529 0.32580575969663 2 1 1 -6.82486896161891 LTS-027 chr14 33299286 33299336 51 * AKAP6 NA 0 NA 0.844 1 NA NA NA NA NA LTS-027 chr14 33299337 60865119 27565783 * c(SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, MIR4503, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, CFL2, FERMT2, WDHD1, BAZ1A, MAP4K5, EGLN3, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, RPL10L, MIPOL1, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, MDGA2, SPTSSA, LINC01599, NID2, ATG14, FKBP3, NA NA NA NA NA NA NA NA NA LTS-027 DAAM1, SAMD4A, FAM179B, KLHDC2, RALGAPA1, SFTA3, FBXO33, NKX2-8, GCH1, TIMM9, ATP5S, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, FAM177A1, ERO1A, FOXA1, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, MGAT2, MIA2, NFKBIA, OTX2, PAX9, ATL1, NIN, DACT1, JKAMP, MBIP, DHRS7, C14orf166, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, DNAAF2, C14orf105, MIS18BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 AP5M1, EAPP, ACTR10, PSMA3, PSMA6, PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, FANCM, PYGL, SNX6, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NPAS3, PCNX4, RPL13AP3, LINC00520, GPR135, GNPNAT1, BMP4, SOS2, SRP54, SSTR1, STYX, NKX2-1, CCDC175, VCPKMT, L2HGDH, DDHD1, TMX1, FSCB, BRMS1L, INSM2, GEMIN2, CDKL1, SLC25A21, NEMF, MAPK1IP1L, AKAP6, KIAA0391, KIAA0586, DLGAP5) 0.387487908854828 215 0.0872459364278296 0.8780267623769 13203 0.560959300993634 3 2 1 -6.76922931501939 LTS-027 NA NA NA NA LTS-027 chr14 60865120 60867038 1919 * character(0) NA 0 NA 0.328959424908117 45 0.154097076840896 0 NA NA -5.7645835315633 LTS-027 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.729 1 NA NA NA NA NA LTS-027 chr14 60899979 63759187 2859209 * c(HIF1A-AS2, SLC38A6, TMEM30B, KCNH5, HIF1A, C14orf39, FLJ22447, MNAT1, SIX6, SIX4, PRKCH, RHOJ, TRMT5, LINC00643, SIX1, SNAPC1, SYT16) 0.366074601483885 15 0.0717293192362456 0.891153659289313 1428 0.470080793205788 3 2 1 -6.781321816888 LTS-027 chr14 63759188 63759190 3 * RHOJ 0.488 1 NA 1.043 1 NA NA NA NA NA LTS-027 chr14 63759191 64488578 729388 * c(WDR89, GPHB5, SYNE2, PPP2R5E, RHOJ, SGPP1) 0 1 NA 1.11993841524077 521 0.666213446571766 4 4 0 -5.76477529237899 LTS-027 chr14 64488579 68126695 3638117 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, PPP1R36, FAM71D, TMEM229B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, FUT8, PLEKHG3, PLEK2, GPX2, HSPA2, RAB15, ARG2, MAX, LINC00238, TEX21P, MTHFD1, ATP6V1D, PIGH, PLEKHH1, MPP5, FUT8-AS1, SPTB, ZBTB25, CHURC1, AKAP5) 0.319261482423901 82 0.0722778939068243 1.07428966055708 3404 0.589956708431141 4 3 1 -6.73627236221649 LTS-027 chr14 68126696 68129081 2386 * VTI1B NA 0 NA 2.552 1 NA NA NA NA NA LTS-027 chr14 68129082 70517900 2388819 * c(LOC100289511, VTI1B, RDH12, ACTN1-AS1, ERH, ZFYVE26, PLEKHD1, RDH11, EXD2, SLC39A9, CCDC177, GALNT16, RAD51B, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.311932426586726 32 0.0782773192545415 1.26425536971544 1962 0.704117887025578 4 3 1 -6.79624743308625 LTS-027 chr14 70517901 70518677 777 * SLC8A3 NA 0 NA 0.496 1 NA NA NA NA NA LTS-027 chr14 70518678 70991263 472586 * c(SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SLC8A3, ADAM21, ADAM20) 0.343408469068905 14 0.0863939354810978 0.791168697222975 326 0.519152284705064 4 3 1 -6.88722154769993 LTS-027 chr14 70991264 70991328 65 * ADAM20 NA 0 NA 0.862 1 NA NA NA NA NA LTS-027 chr14 70991329 102676728 31685400 * c(MED6, SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1260A, MIR1197, MIR1193, MIR3173, TUNAR, MEG9, MIR4505, MIR4709, MIR2392, DIO2-AS1, MIR5698, LINC00911, FBLN5, BATF, NPC2, AHSA1, CYP46A1, PAPOLA, ACOT2, TMED10, PTPN21, FOXN3, CHGA, C14orf1, IFT43, SERPINA3, AK7, IFI27L1, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, NA NA NA NA NA NA NA NA NA LTS-027 GSC, SERPINA12, PRIMA1, LOC145474, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, TTC7B, SYNE3, SAMD15, EML5, DIO2, DIO3, DLST, DYNC1H1, EML1, ESRRB, VASH1, SNW1, PCNX1, TTLL5, ANGEL1, DICER1, TTC9, FOS, FLRT2, LINC00521, SERPINA11, GALC, SIPA1L1, DCAF4, TMEM251, TCL6, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, GSTZ1, GTF2A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 POMT2, CCDC85C, ITPK1-AS1, SNORD56B, SERPINA9, HSP90AA1, VSX2, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, RTL1, HEATR4, FOXN3-AS1, LINC00642, DICER1-AS1, LTBP2, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, MAP3K9, ALDH6A1, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, COQ6, SERPINA5, FCF1, SERPINA10, GLRX5, EVL, GSKIP, ASB2, PGF, SERPINA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SERPINA4, ZFYVE1, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, VRTN, PPP2R5C, MEG3, FLVCR2, GPATCH2L, PPP4R3A, BTBD7, TDP1, SPATA7, YLPM1, LGMN, PSEN1, KCNK13, C14orf132, PSMC1, DDX24, ADCK1, TMEM63C, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, ZNF410, NGB, ABCD4, RBM25, MIR487A, BDKRB1, BDKRB2, VIPAS39, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SEL1L, MOAP1, ACOT1, ACOT6, IRF2BPL, SYNDIG1L, BCL11B, MIR539, MIR376A2, MIR487B, SNORA79, MIR411, TGFB3, MIR654, MIR655, MIR656, TSHR, LINC01220, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, ZC2HC1C, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, BBOF1, DPF3, GPR68, TCL1A, SLIRP, DNAL1, RPS6KL1, IFI27L2, SETD3, HHIPL1, GON7, GPR65, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 STON2, CIPC, NUMB, SERPINA6, ADAM20, DLK1, CCNK, ALKBH1, EIF2B2, PAPLN, FAM181A, EFCAB11, ELMSAN1, LIN52, NEK9, WDR20, PNMA1, RPS6KA5, TRIP11, NRXN3, SPTLC2, ENTPD5, TCL1B, RGS6, ACYP1, AREL1, GOLGA5) 0.318681738502283 478 0.0777245539496797 1.11633521592556 22488 0.65476380541761 4 3 1 -6.74462765981094 LTS-027 NA NA NA NA LTS-027 chr14 102676729 104322606 1645878 * c(LINC00605, MIR4309, CKB, TRMT61A, ANKRD9, LINC00637, EIF5, RCOR1, PPP1R13B, KLC1, MARK3, CINP, ZNF839, MOK, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, AMN, APOPT1, EXOC3L4, WDR20, BAG5, CDC42BPB, TECPR2) 0.31419238403716 37 0.0705067457850751 1.28152590333037 2464 0.655066693986372 4 3 1 -6.79151813276789 LTS-027 chr14 104322607 104323984 1378 * LINC00637 0.365292730533049 2 0.00848528137423858 1.0123889207697 32 0.354848076305994 6 4 2 -6.73776283655995 LTS-027 chr14 104323985 104559623 235639 * c(TDRD9, LINC00637, ASPG, RD3L, C14orf2) 0.478 1 NA 0.981940866966639 261 0.50336442283406 3 3 0 -5.76849337980008 LTS-027 chr14 104559624 105403973 844350 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, PLD4, ADSSL1, LINC00638, AKT1, KIF26A, CEP170B, ASPG, TMEM179, C14orf180, MIR203A, INF2) 0.424020617509005 48 0.0521931593843946 1.07546407684256 1309 0.520281786865866 4 2 2 -6.73816678470839 LTS-027 chr14 105403974 105419083 15110 * AHNAK2 0.481 1 NA 0.671106696146385 177 0.214043378905809 2 2 0 -5.76486923576721 LTS-027 chr14 105419084 106357014 937931 * c(AHNAK2, C14orf79, CRIP1, CRIP2, ELK2AP, PACS2, NUDT14, C14orf80, BRF1, GPR132, JAG2, CDCA4, TEX22, TMEM121, BTBD6, MTA1, FAM30A) 0.324427511227421 39 0.11647832300516 1.08007557070936 1733 0.741292427925373 4 3 1 -6.73410760230205 LTS-027 chr14 106357015 106357548 534 * FAM30A NA 0 NA 0.451 1 NA NA NA NA NA LTS-027 chr14 106357549 107178941 821393 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.365148058752587 10 0.0461957188973659 0.602028109240243 380 0.447417295013237 3 2 1 -7.23262040628923 LTS-027 chr14 107178942 107283157 104216 * character(0) NA 0 NA 0.684556908915306 56 0.243104535662624 2 NA NA -5.7652589703508 LTS-027 chr15 20169987 20446043 276057 * character(0) 0.422 1 NA 0.649471861262961 23 0.222243768169365 2 2 0 -5.78629876030743 LTS-027 chr15 20446044 20875072 429029 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.335492249608573 10 0.0807647475353229 1.18647324803654 85 1.0837996920783 4 3 1 -6.75569915802219 LTS-027 chr15 20875073 20876434 1362 * NBEAP1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-027 chr15 20876435 22690558 1814124 * c(POTEB, OR4N4, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, LOC646214, CXADRP2, REREP3, LOC727924) 0.237782810900851 17 0.118415830122199 0.392356838792124 198 0.333911888005569 1 1 0 -7.50437117336998 LTS-027 chr15 22690559 22833360 142802 * c(GOLGA8DP, GOLGA6L1) NA 0 NA 0.638 1 NA NA NA NA NA LTS-027 chr15 22833361 22993155 159795 * c(TUBGCP5, CYFIP1) 0.233760533950468 6 0.0550260544348463 0.8891216842291 281 0.39856322679715 2 2 0 -6.80251548749065 LTS-027 chr15 22993156 22997700 4545 * CYFIP1 NA 0 NA 0.294 1 NA NA NA NA NA LTS-027 chr15 22997701 32393601 9395901 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-027 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, LOC100288637, LOC100289656, MIR4508, MIR4715, CHRNA7, NIPA1, PWAR1, OTUD7A, FAN1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, DKFZP434L187, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 LOC283683, LOC283710, GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P10, HERC2P2, MIR211, TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, KLF13, MAGEL2, MTMR10, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8S, GOLGA8T, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF, CHRFAM7A, ARHGAP11B) 0.223895579299301 57 0.087838093682379 0.696558630804875 3824 0.450068865343338 2 2 0 -6.73749463721476 LTS-027 NA NA NA NA LTS-027 chr15 32393602 32403943 10342 * CHRNA7 NA 0 NA 0.291 1 NA NA NA NA NA LTS-027 chr15 32403944 32464575 60632 * CHRNA7 NA 0 NA 0.354271824673503 77 0.281635638022318 0 NA NA -5.77262762882525 LTS-027 chr15 32464576 32620053 155478 * character(0) NA 0 NA 1.255 1 NA NA NA NA NA LTS-027 chr15 32620054 40633138 8013085 * c(SRP14-AS1, ANKRD63, WHAMMP1, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHRM5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, PGBD4, FSIP1, GOLGA8A, LPCAT4, NUTM1, GREM1, FAM98B, FMN1, C15orf52, C15orf53, C15orf54, MEIS2, GOLGA8B, EIF2AK4, EMC4, PLCB2, ZNF770, NOP10, EMC7, PAK6, AVEN, GJD2, RYR3, SCG5, C15orf56, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, GOLGA8O, KATNBL1, C15orf41, NA NA NA NA NA NA NA NA NA LTS-027 DPH6, BMF, AQR, ARHGAP11A, SLC12A6) 0.22750145885871 89 0.0932439864615191 0.685222500378244 5197 0.407832173794832 2 2 0 -6.75838050255933 LTS-027 NA NA NA NA LTS-027 chr15 40633139 40655845 22707 * c(C15orf52, PHGR1, DISP2) 0.104 1 NA 0.727509925803336 33 0.306048235948637 2 2 0 -5.7645640382203 LTS-027 chr15 40655846 40686300 30455 * c(DISP2, KNSTRN) 0.166440686493495 4 0.0635741037425355 0.695339662571731 192 0.334177053713479 3 3 0 -6.74854927974073 LTS-027 chr15 40686301 40911274 224974 * c(CHST14, BAHD1, RPUSD2, MRPL42P5, IVD, KNL1, C15orf57, KNSTRN) 0.136405564949339 17 0.0589051455856837 1.21192707924597 489 0.686273465087082 4 4 0 -6.73961377996645 LTS-027 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.424 1 NA NA NA NA NA LTS-027 chr15 40912850 40916481 3632 * KNL1 0.179099001046082 6 0.0595684480241008 0.383694996700997 82 0.180287408555978 3 3 0 -6.7901406860196 LTS-027 chr15 40916482 42976459 2059978 * c(JMJD7, PLA2G4B, MIR4310, RAD51-AS1, CHP1, OIP5, PLA2G4E, EXD1, RHOV, MAPKBP1, RTF1, MGA, VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, PLA2G4D, EHD4, ITPKA, LTK, NDUFAF1, NUSAP1, SPTBN5, DLL4, INO80, PPP1R14D, HAUS2, RMDN3, DNAJC17, KNL1, STARD9, VPS18, RAD51, C15orf62, ZNF106, SPINT1, MIR626, MIR627, OIP5-AS1, TYRO3, CHAC1, CAPN3, ZFYVE19, JMJD7-PLA2G4B, SNAP23) 0.153578122942055 52 0.0677704931632473 1.06632317717861 4708 0.522391612926054 4 4 0 -6.75729649016585 LTS-027 chr15 42976460 42976558 99 * STARD9 NA 0 NA 0.825 1 NA NA NA NA NA LTS-027 chr15 42976559 42986927 10369 * STARD9 0.151 1 NA 0.669502541237128 220 0.18000755576596 2 2 0 -5.76490093242187 LTS-027 chr15 42986928 42987374 447 * STARD9 NA 0 NA 1.037 1 NA NA NA NA NA LTS-027 chr15 42987375 43852785 865411 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, PPIP5K1, LCMT2) 0.181174394585666 2 0.0480832611206852 1.01115842665546 1869 0.481601150024248 3 3 0 -6.78439798227824 LTS-027 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.131 1 NA NA NA NA NA LTS-027 chr15 43873177 44029071 155895 * c(CKMT1B, CATSPER2, STRC, CATSPER2P1, CKMT1A, PPIP5K1) 0.217276960868395 3 0.252955200249636 0.639326227896095 424 0.625903279215444 2 2 0 -6.73533445445062 LTS-027 chr15 44029072 44029087 16 * CATSPER2P1 NA 0 NA 0.823 1 NA NA NA NA NA LTS-027 chr15 44029088 45361255 1332168 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, TERB2, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.111080008507831 4 0.0236977495415352 0.989891176574717 1633 0.565838889154352 5 5 0 -6.9862155896801 LTS-027 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.227 1 NA NA NA NA NA LTS-027 chr15 45365581 45367016 1436 * SORD 0.0956681195331905 8 0.0848880565383443 0.470815068955443 43 0.556131816118467 7 7 0 -6.73885177411966 LTS-027 chr15 45367017 45384803 17787 * SORD NA 0 NA 1.512 1 NA NA NA NA NA LTS-027 chr15 45384804 45695763 310960 * c(NA, GATM, DUOXA2, DUOX2, DUOX1, SPATA5L1, SHF, DUOXA1, SLC28A2) 0.128523905962316 27 0.0351538742074735 1.14442846977751 807 0.516418480541636 5 5 0 -6.78180889359032 LTS-027 chr15 45695764 45779810 84047 * c(MIR147B, SLC30A4, SPATA5L1, C15orf48) 0.204 1 NA 1.14597573072577 201 1.3821468729509 4 4 0 -5.76445720496142 LTS-027 chr15 45779811 45983585 203775 * c(BLOC1S6, HMGN2P46, SQRDL, SLC30A4) 0.235 1 NA 1.05761051652642 218 0.49158410347673 4 4 0 -5.76514127864135 LTS-027 chr15 47873448 56258725 8385278 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, SLC24A5, PRTG, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, UNC13C, MYO5A, NEDD4, MYEF2, RSL24D1, TRPM7, FLJ10038, MYO5C, NA NA NA NA NA NA NA NA NA LTS-027 MAPK6, FAM214A, DTWD1, RAB27A, SLC12A1, MIR628, ATP8B4, SEMA6D, SPPL2A, USP8, CCPG1, COPS2, PIGB, SECISBP2L) 0.217311751920318 94 0.0838973489254262 0.678010733164673 7233 0.426141357685905 2 2 0 -6.77329046438986 LTS-027 NA NA NA NA LTS-027 chr15 56258726 56380305 121580 * c(NEDD4, RFX7) 0.231 1 NA 0.27349738413041 64 0.144531536625627 0 0 0 -5.81833440329998 LTS-027 chr15 56380306 56382754 2449 * RFX7 NA 0 NA 0.846 1 NA NA NA NA NA LTS-027 chr15 56382755 59961202 3578448 * c(MIR2116, MYZAP, ADAM10, FAM81A, GCOM1, LOC145783, LINC00926, GTF2A2, AQP9, TEX9, LIPC, MYO1E, FAM63B, RNF111, ZNF280D, MNS1, RFX7, BNIP2, HSP90AB4P, TCF12, SLTM, POLR2M, CGNL1, ALDH1A2, CCNB2, GCNT3, LDHAL6B) 0.222684823880971 49 0.0847444136581197 0.692127547976095 2732 0.391484533640384 2 2 0 -6.73780007255777 LTS-027 chr15 59961203 59961456 254 * BNIP2 NA 0 NA 2.779 1 NA NA NA NA NA LTS-027 chr15 59961457 67519379 7557923 * c(USP3-AS1, MIR1272, MIR4311, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, MGC15885, LCTL, ZNF609, DAPK2, FOXB1, FBXL22, ANXA2, RBPMS2, ANKDD1A, C2CD4B, KBTBD13, UBAP1L, MIR190A, SMAD3, SMAD6, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, PPIB, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, BNIP2, SNX1, NA NA NA NA NA NA NA NA NA LTS-027 SCARNA14, TPM1, CA12, ICE2, AAGAB, SNX22, PIF1, PLEKHO2, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101, USP3) 0.206260649197708 124 0.0767271981931108 0.806245402879531 7251 0.465529846620078 3 3 0 -7.10039208664597 LTS-027 NA NA NA NA LTS-027 chr15 67519380 67524129 4750 * AAGAB NA 0 NA 0.384 1 NA NA NA NA NA LTS-027 chr15 67524130 67835481 311352 * c(IQCH-AS1, C15orf61, MAP2K5, IQCH, AAGAB) 0.4 1 NA 0.445060094707638 248 0.197810650243802 1 1 0 -5.84449454685953 LTS-027 chr15 67835482 67835586 105 * MAP2K5 NA 0 NA 1.235 1 NA NA NA NA NA LTS-027 chr15 67835587 73612341 5776755 * c(NR2E3, HCN4, ADPGK-AS1, MIR548H4, MIR4312, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, EWSAT1, HEXA, TMEM202, SKOR1, LINC00593, MYO9A, NEO1, PKM, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, MAP2K5, THAP10, PARP6, BBS4, CELF6, RPLP1, MIR629, MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, HEXA-AS1, ANP32A, ADPGK, PIAS1, CALML4, KIF23) 0.206558542803161 40 0.0723495078217626 0.794623264019591 4210 0.413198397431816 2 2 0 -7.03629416404113 LTS-027 chr15 73612342 73661606 49265 * HCN4 NA 0 NA 0.301525434014708 159 0.159029713591366 0 NA NA -5.76527874343289 LTS-027 chr15 73661607 73735457 73851 * character(0) NA 0 NA 1.027 1 NA NA NA NA NA LTS-027 chr15 73735458 76191735 2456278 * c(DNM1P35, LOXL1-AS1, MIR4313, MIR4513, SCAMP2, SNUPN, ARID3B, CLK3, CSK, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, SNX33, SIN3A, ULK3, NPTN, REC114, LOC283731, GOLGA6A, ISLR, C15orf59, LOXL1, MAN2C1, MPI, UBL7-AS1, PML, RPP25, COMMD4, IMP3, C15orf39, FAM219B, ISLR2, PTPN9, CPLX3, PPCDC, STRA6, GOLGA6C, GOLGA6D, MIR631, LOC729739, NEIL1, LMAN1L, CCDC33, EDC3, CD276, SEMA7A, UBL7, UBE2Q2, NA NA NA NA NA NA NA NA NA LTS-027 COX5A, STOML1) 0.214937543090273 66 0.0790399149702741 0.824718340177132 3585 0.741777097858171 2 2 0 -6.80165204605053 LTS-027 NA NA NA NA LTS-027 chr15 76191736 90172053 13980318 * c(NA, UBE2Q2P2, MIR1276, MIR1179, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, MORF4L1, ABHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, C15orf40, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, HAPLN3, NRG4, LINC00052, CTSH, CFAP161, ACAN, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, MIR9-3HG, FBXO22, MRPL46, ST20-AS1, LINC00927, NA NA NA NA NA NA NA NA NA LTS-027 CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, LOC338963, IDH3A, TMC3, IL16, IREB2, ISG20, GOLGA6L5P, KIF7, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MIR7-2, MIR9-3, MFGE8, GOLGA6L9, DNM1P41, LOC440300, NMB, NTRK3, SCAPER, HDGFRP3, RHCG, PDE8A, BTBD1, TM6SF1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, FANCI, DNAJA4, PSMA4, ADAMTSL3, CEMIP, ALPK3, ABHD17C, RASGRF1, MESDC1, RCN2, BCL2A1, RLBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, ISL2, EFTUD1P1, MRPS11, SCARNA15, FBXO22-AS1, MIR549A, AGBL1-AS1, ANKRD34C-AS1, TYRO3P, EFL1, PEAK1, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, LINGO1, WDR73, TICRR, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, HOMER2, ZNF592, ARNT2) 0.21687721799855 202 0.0768359330191673 0.736828748032665 9963 0.424467320299244 2 2 0 -6.82794506587139 LTS-027 NA NA NA NA LTS-027 chr15 90172054 90172146 93 * KIF7 NA 0 NA 0.966 1 NA NA NA NA NA LTS-027 chr15 90172147 91509592 1337446 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, MESP2, FES, GABARAPL3, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, MAN2A2, TTLL13P, FURIN, NGRN, PLIN1, MESP1, UNC45A, WDR93, BLM, CRTC3, PEX11A, IQGAP1, PRC1, RCCD1) 0.184805919538021 80 0.0762247997369407 0.883071657935898 2576 0.473882612504594 3 3 0 -6.75153521654363 LTS-027 chr15 91509593 91509619 27 * c(PRC1-AS1, PRC1) NA 0 NA 0.48 1 NA NA NA NA NA LTS-027 chr15 91509620 102516492 11006873 * c(FAM138E, LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, VPS33B, OR4F4, SLCO3A1, FAM169B, IGF1R, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, PCSK6, LINS1, MCTP2, SELENOS, RGMA, NR2F2-AS1, TTC23, SNRPA1, NA NA NA NA NA NA NA NA NA LTS-027 NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PRC1, ARRDC4, LINC00923, SV2B) 0.225878719894031 171 0.0924222072679766 0.754513781367776 4944 0.424218714311384 2 2 0 -6.90508974711441 LTS-027 NA NA NA NA LTS-027 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.571 1 NA NA NA NA NA LTS-027 chr16 81704 81779 76 * character(0) 0.207 1 NA 3.79 1 NA NA NA NA NA LTS-027 chr16 81780 2649988 2568209 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-027 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.370149371097476 309 0.0703652938354991 1.0813344466306 8435 0.589712436426633 3 2 1 -6.90771329257809 LTS-027 NA NA NA NA LTS-027 chr16 2649989 2650065 77 * PDPK1 NA 0 NA 0.567 1 NA NA NA NA NA LTS-027 chr16 2650066 2732840 82775 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.408806143949302 3 0.0979914962296899 0.484932155390192 158 0.430116706110789 2 1 1 -6.79414681651739 LTS-027 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 1.258 1 NA NA NA NA NA LTS-027 chr16 2747831 15133889 12386059 * c(MIR365A, LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, NTAN1, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, PDXDC1, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, LINC00514, LINC00921, NA NA NA NA NA NA NA NA NA LTS-027 TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, PRSS22, NPIPA3, MMP25, C16orf90, TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, NPIPA1, LITAF, SEC14L5) 0.376381805774477 210 0.0752274255191498 1.10972249559004 8879 1.17742165272426 3 2 1 -6.96662120120077 LTS-027 NA NA NA NA LTS-027 chr16 15133890 15166891 33002 * c(NTAN1, PDXDC1, RRN3) 0.454 1 NA 1.09081544502825 91 0.379168009255764 4 4 0 -5.76441708408271 LTS-027 chr16 15166892 16306169 1139278 * c(NPIPA5, MIR3180-4, FOPNL, PDXDC1, MPV17L, ABCC6, ABCC1, MYH11, RRN3, NDE1, MIR484, C16orf45, KIAA0430) 0.418927438867063 16 0.0421995260636894 1.19268055828708 1129 0.633241095039224 5 3 2 -6.76421231250295 LTS-027 chr16 16306170 16308154 1985 * ABCC6 NA 0 NA 0.476 1 NA NA NA NA NA LTS-027 chr16 16308155 19896627 3588473 * c(MIR3179-2, COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, NOMO2, PKD1P1, ABCC6, KNOP1, NOMO3, GDE1, GPRC5B, SYT17, C16orf62, RPS15A, XYLT1, ABCC6P1, CLEC19A, TMC5, TMC7, CCP110) 0.416131643426667 38 0.0860789648721255 0.794534496361262 1741 0.492879298376651 2 1 1 -6.87159594022275 LTS-027 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.429 1 NA NA NA NA NA LTS-027 chr16 20015702 20810732 795031 * c(ERI2, ACSM1, ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, THUMPD1, ACSM3, UMOD) 0.449846234846816 20 0.0393877819687914 0.587464975865709 795 0.315684794902675 2 1 1 -7.05859874169224 LTS-027 chr16 20810733 20811232 500 * ERI2 NA 0 NA 1.589 1 NA NA NA NA NA LTS-027 chr16 20811233 27789968 6978736 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, C16orf82, NSMCE1, GGA2, NPIPB3, KIAA0556, PDZD9, ANKS4B, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, DNAH3, POLR3E, PRKCB, UBFD1, TMEM159, LYRM1, USP31, RBBP6, NA NA NA NA NA NA NA NA NA LTS-027 SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.414442926386333 103 0.0892183722763797 0.771181938782646 5438 0.395120777753258 2 1 1 -6.96122561793851 LTS-027 NA NA NA NA LTS-027 chr16 27789969 27802196 12228 * c(GSG1L, KIAA0556) NA 0 NA 1.134 1 NA NA NA NA NA LTS-027 chr16 27802197 28137248 335052 * c(GSG1L, XPO6) 0.423046004468015 6 0.0527522511367998 0.986674187848738 126 0.470835703356867 4 2 2 -6.74973637501241 LTS-027 chr16 28137249 28167914 30666 * XPO6 0.4 1 NA 1.14517971222183 41 0.777170250833424 4 4 0 -5.76446268032029 LTS-027 chr16 28167915 29913208 1745294 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, CDIPT, PRRT2, ATXN2L, SGF29, CLN3, XPO6, QPRT, IL27, ASPHD1, SH2B1, SEZ6L2, NUPR1, LAT, C16orf54, KIF22, SBK1, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, ATP2A1, SLX1A, BOLA2, APOBR, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A2, SULT1A1, SULT1A3, TUFM, PAGR1, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19, MVP) 0.378256595251011 58 0.084021156555604 1.20063715532587 2256 0.729160497348912 5 3 2 -6.83590639092804 LTS-027 chr16 29913209 29913248 40 * c(SLX1B-SULT1A4, ASPHD1, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.405 1 NA NA NA NA NA LTS-027 chr16 29913249 30199805 286557 * c(SLX1B-SULT1A4, CORO1A, TMEM219, C16orf92, ALDOA, KCTD13, ASPHD1, INO80E, SMG1P2, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, TBX6, GDPD3, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2) 0.198204200937051 8 0.0177799043866946 1.90882625259899 883 0.899519653906283 12 10 2 -6.85245716191326 LTS-027 chr16 30199806 30217589 17784 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.500280118020582 39 0.706331049832028 1 NA NA -5.7644139898187 LTS-027 chr16 30217590 30347601 130012 * c(SMG1P2, SMG1P5, LOC613037, LOC613038) NA 0 NA 2.794 1 NA NA NA NA NA LTS-027 chr16 30347602 30613963 266362 * c(MIR4518, CD2BP2, ZNF689, ZNF785, ZNF688, SEPT1, ZNF48, SEPHS2, TBC1D10B, MYLPF, ITGAL, ZNF771, ZNF747, DCTPP1, ZNF768, ZNF764) 0.210387746058618 14 0.0377185208244811 2.13819486407752 880 1.04991033581313 7 6 1 -6.74267593436572 LTS-027 chr16 30613964 31574966 961003 * c(MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, SRCAP, STX1B, ZNF689, COX6A2, PRSS36, CTF1, ZNF629, FUS, PYDC1, FBXL19-AS1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAM, ITGAX, TRIM72, AHSP, PHKG2, FBXL19, PRSS8, FBRS, C16orf58, SLC5A2, SNORA30, STX4, TGFB1I1, LOC730183, PRR14, VKORC1, ZNF668, ARMC5, HSD3B7, KAT8, CCDC189, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.385286476001303 60 0.0463964736630014 1.08366228457379 3203 0.523060325455355 3 2 1 -6.80393506758229 LTS-027 chr16 31574967 31575244 278 * character(0) NA 0 NA 0.465 1 NA NA NA NA NA LTS-027 chr16 31575245 31987811 412567 * c(CLUHP3, ZNF267, ZNF720, YBX3P1) 0.382657936482205 5 0.102111213879769 0.603933710372976 255 0.361842655534862 2 1 1 -6.89555519655695 LTS-027 chr16 31987812 31987859 48 * character(0) 0.37 1 NA 1.429 1 NA NA NA NA NA LTS-027 chr16 31987860 32893880 906021 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.436695469807623 3 0.120552892955748 1.16154585253036 63 0.717181808927005 4 2 2 -6.73912506941608 LTS-027 chr16 32893881 32896672 2792 * c(SLC6A10P, LOC390705) 0.457 1 NA 2.14423730564597 7 0.919279764660511 9 9 0 -5.76441171626121 LTS-027 chr16 32896673 33961436 1064764 * c(LOC390705, LINC00273) 0.308562449682313 25 0.100926904242625 1.36762770821916 167 0.930572997575399 4 3 1 -6.77621813106177 LTS-027 chr16 33961437 33961444 8 * LINC00273 0.207 1 NA 3.642 1 NA NA NA NA NA LTS-027 chr16 33961445 33962369 925 * LINC00273 0.294308255255023 59 0.101275293036081 2.46377027118937 77 1.31988761884645 18 13 5 -6.73318534264984 LTS-027 chr16 33962370 33962387 18 * LINC00273 NA 0 NA 1.432 1 NA NA NA NA NA LTS-027 chr16 33962388 33965652 3265 * LINC00273 0.458264330656605 3 0.0862612311528186 0.966083942409697 22 0.421906518543635 4 2 2 -6.80411214915641 LTS-027 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.843632586361714 117 0.602956417699126 3 NA NA -5.76959594808244 LTS-027 chr16 46508169 46602819 94651 * ANKRD26P1 0.312 1 NA 0.921338518349187 97 0.61787120783166 3 3 0 -5.7644812773258 LTS-027 chr16 46602820 56878638 10275819 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, NUDT21, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, CES5A, ZNF423, RPGRIP1L, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, BRD7, MT1DP, C16orf87, C16orf97, CES1P2, MMP2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, CES1P1, PHKB, LPCAT2, HEATR3, OGFOD1, VPS35, BBS2, RBL2, SALL1, NOD2, PAPD5, CASC16, NA NA NA NA NA NA NA NA NA LTS-027 LOC643802, CRNDE, AKTIP, MT1IP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, MT4, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1, NUP93) 0.3811078015907 96 0.0957613238230909 0.951205654310698 5677 0.532396343289351 3 2 1 -6.7970288869889 LTS-027 NA NA NA NA LTS-027 chr16 56878639 56878757 119 * NUP93 NA 0 NA 1.763 1 NA NA NA NA NA LTS-027 chr16 56878758 58714239 1835482 * c(KATNB1, CETP, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, PLLP, POLR2C, SLC38A7, DOK4, COQ9, CIAPIN1, ZNF319, CCL17, CCL22, CX3CL1, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, USB1, SETD6, FAM192A, NLRC5, DRC7, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.375665774169785 86 0.0600049712942799 1.05469301270443 3429 0.522365316069937 3 2 1 -6.84970252688519 LTS-027 chr16 58714240 58741104 26865 * c(GOT2, SLC38A7) NA 0 NA 0.573 1 NA NA NA NA NA LTS-027 chr16 58741105 65087892 6346788 * c(CDH8, CDH11, GOT2, APOOP5) 0.353442119235268 9 0.0579115705191976 0.743659753515345 382 0.444276578715601 3 2 1 -7.56058115174925 LTS-027 chr16 65087893 65155696 67804 * CDH11 NA 0 NA 1.711 1 NA NA NA NA NA LTS-027 chr16 65155697 72058118 6902422 * c(CDH3, SNORD111B, VAC14-AS1, CDH5, MIR1538, MIR1972-1, SNORA70D, LINC00920, SMG1P7, LOC100506083, CKLF-CMTM1, CDH11, CDH16, CHST4, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, AP1G1, DHODH, NQO1, DYNC1LI2, AGRP, E2F4, FUK, PHLPP2, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, NA NA NA NA NA NA NA NA NA LTS-027 LINC00922, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, ATXN1L, PKD1L3, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, HYDIN, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, ZNF821, VAC14, CMTR2, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SNORD71, SNORD111, TERF2, TK2, ZNF19, ZNF23, CA7, CALB2, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MARVELD3, MTSS1L, IST1, CDH1) 0.40055323361575 202 0.0712240484705686 1.03024753659504 10530 0.756189592765805 4 2 2 -6.85333034295829 LTS-027 NA NA NA NA LTS-027 chr16 72058119 72078092 19974 * c(DHODH, TXNL4B) NA 0 NA 0.592 1 NA NA NA NA NA LTS-027 chr16 72078093 72130192 52100 * c(HP, HPR, TXNL4B, DHX38) 0.392795690059491 4 0.0784899144264196 0.601217585769776 140 0.464649294695082 3 2 1 -6.76080594845931 LTS-027 chr16 72130193 81969922 9839730 * c(LOC100129617, SYCE1L, LINC01568, MIR4720, MIR4719, CLEC3A, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, RFWD3, CENPN, CMC2, PSMD7, VAT1L, FA2H, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, ZNRF1, CNTNAP4, BCAR1, DHX38) 0.378852972299709 127 0.0692331981099742 1.03104784879913 4331 0.562105851050634 3 2 1 -7.05966343619916 LTS-027 chr16 81969923 81971277 1355 * PLCG2 NA 0 NA 0.636 1 NA NA NA NA NA LTS-027 chr16 81971278 83842420 1871143 * c(MIR3182, CDH13, MPHOSPH6, HSBP1, HSD17B2, PLCG2, SDR42E1) 0.428999606554409 14 0.0744602925379371 0.787759080144744 345 0.439186644678743 2 1 1 -6.80532167751001 LTS-027 chr16 83842421 83842837 417 * HSBP1 NA 0 NA 1.879 1 NA NA NA NA NA LTS-027 chr16 83842838 90109711 6266874 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, SNAI3, FAM92B, NA NA NA NA NA NA NA NA NA LTS-027 IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.375371407044263 242 0.0616362847714333 1.10315796160963 7110 0.897607370240683 3 2 1 -6.93637708836213 LTS-027 NA NA NA NA LTS-027 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.780415327245963 125 0.542324269382526 2 NA NA -5.76551928227517 LTS-027 chr17 6004 62472 56469 * c(DOC2B, RPH3AL) 0.265 1 NA 0.785836260049247 39 0.328882307520076 2 2 0 -5.76817385883733 LTS-027 chr17 62473 2937789 2875317 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, MIR22HG, SCARF1, NA NA NA NA NA NA NA NA NA LTS-027 RPH3AL, SGSM2) 0.217433540006062 73 0.0625379184822889 0.920847545084137 3525 0.610586587170843 3 3 0 -7.03671286792365 LTS-027 NA NA NA NA LTS-027 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.149 1 NA NA NA NA NA LTS-027 chr17 2965957 3386899 420943 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.260747706763274 13 0.129278867727969 0.501860827178739 312 0.395840496470242 1 1 0 -6.80401978022642 LTS-027 chr17 3386900 3392554 5655 * c(ASPA, SPATA22) NA 0 NA 0.995 1 NA NA NA NA NA LTS-027 chr17 3392555 10223514 6830960 * c(LOC100128288, C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, NA NA NA NA NA NA NA NA NA LTS-027 DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, CAMTA2, KDM6B, ZZEF1, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ASPA, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 UBE2G1, TRPV1, ZNF232, MIS12, PHF23, CTC1, NDEL1, PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.210546924608199 250 0.0690269605671622 0.867264485882436 13103 0.460082216997604 3 3 0 -6.94364735490538 LTS-027 NA NA NA NA LTS-027 chr17 10223515 10532025 308511 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.206578072432688 13 0.0849523244878999 0.5525014666475 870 0.301223454431901 2 2 0 -6.86591503862485 LTS-027 chr17 10532026 10532946 921 * MYH3 NA 0 NA 1.48 1 NA NA NA NA NA LTS-027 chr17 10532947 14063289 3530343 * c(MIR744, LINC00675, MAGOH2P, COX10-AS1, TMEM220-AS1, COX10, DNAH9, LINC00670, TMEM220, SHISA6, MYH3, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, MYOCD, CDRT15P1, ARHGAP44, HS3ST3A1) 0.226765622895512 39 0.093126885130681 0.739468026166912 1556 0.357318667812436 2 2 0 -6.7754236969399 LTS-027 chr17 14063290 14095601 32312 * COX10 0.28772388574786 2 0.037476659402887 0.376921374816492 84 0.2269397658932 1 1 0 -6.89692400018047 LTS-027 chr17 14095602 15406485 1310884 * c(TVP23C-CDRT4, MIR4731, COX10, CDRT15, TVP23C, CDRT4, PMP22, TEKT3, MGC12916, CDRT7, HS3ST3B1) 0.20604681603834 10 0.0624592311476499 0.687978799156873 413 0.694231447263512 2 2 0 -6.7640550047776 LTS-027 chr17 15406486 15440242 33757 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.274 1 NA NA NA NA NA LTS-027 chr17 15440243 15643808 203566 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A) 0.221665392860543 17 0.0874778123129449 0.470829792803314 523 0.37393945632312 2 2 0 -6.87156785504572 LTS-027 chr17 15643809 15643818 10 * TBC1D26 NA 0 NA 0.594 1 NA NA NA NA NA LTS-027 chr17 15643819 16610208 966390 * c(MIR1288, LRRC75A-AS1, ZSWIM7, ADORA2B, CENPV, SNORD49A, TBC1D26, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.232054798942959 23 0.0534754570427299 0.809775354591304 996 0.386303888119895 2 2 0 -6.83780951237424 LTS-027 chr17 16610209 16668045 57837 * c(USP32P1, CCDC144A) NA 0 NA 0.337898707534376 43 0.226091831027983 0 NA NA -5.76950028940087 LTS-027 chr17 16668046 16675277 7232 * c(USP32P1, CCDC144A) NA 0 NA 1.189 1 NA NA NA NA NA LTS-027 chr17 16675278 18315260 1639983 * c(FAM106CP, PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, KRT16P2, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2, CCDC144A) 0.216784874285158 24 0.0771580347004807 0.85518007719057 2753 0.507367922088493 2 2 0 -6.87494599170277 LTS-027 chr17 18315261 18770735 455475 * c(FBXW10, TRIM16L, USP32P2, FOXO3B, TBC1D28, CCDC144B, KRT17P5, TVP23B, PRPSAP2, LGALS9C, KRT16P1, ZNF286B, FAM106A) 0.271065252710313 19 0.117837880504833 0.508890181818869 574 0.475531928377652 1 1 0 -6.78363324862078 LTS-027 chr17 18770736 18775860 5125 * PRPSAP2 NA 0 NA 1.344 1 NA NA NA NA NA LTS-027 chr17 18775861 20224816 1448956 * c(MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, B9D1, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, SNORA59A, RNF112, SPECC1, ULK2) 0.215815953059523 27 0.080216391814077 0.819651639307925 1698 0.467714122136014 2 2 0 -6.82491000747122 LTS-027 chr17 20224817 20254177 29361 * CCDC144CP NA 0 NA 0.452 1 NA NA NA NA NA LTS-027 chr17 20254178 20768839 514662 * c(LOC100287072, CDRT15L2, LGALS9B, CCDC144NL, CCDC144CP, KRT16P3) 0.139968537703249 5 0.137828879412117 0.550938162602896 203 0.596204244815785 3 3 0 -6.96869150686876 LTS-027 chr17 20768840 20799137 30298 * CCDC144NL NA 0 NA 0.801 1 NA NA NA NA NA LTS-027 chr17 20799138 21114586 315449 * c(USP22, DHRS7B, CCDC144NL, TMEM11) 0.213811691361208 7 0.0859024917871309 0.931476349388108 213 0.383172796900465 2 2 0 -6.83539524976115 LTS-027 chr17 21114587 21199022 84436 * c(NATD1, MAP2K3, TMEM11) 0.406 1 NA 0.938588279371041 50 0.647353791230428 3 3 0 -5.76460762003844 LTS-027 chr17 21199023 21218390 19368 * MAP2K3 0.372589649840557 59 0.0642230733930501 1.03871287756155 134 0.397516373284817 6 4 2 -6.7490728839659 LTS-027 chr17 21218391 21320396 102006 * c(KCNJ12, MAP2K3) 0.303442043072904 57 0.0714758928460874 1.64652872793137 100 0.879064952955782 11 8 3 -6.74693547494372 LTS-027 chr17 21320397 22066835 746439 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.364118085985382 7 0.125380373644515 0.673375728496545 203 0.483196786483651 2 1 1 -6.8907498555958 LTS-027 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.519 1 NA NA NA NA NA LTS-027 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.312 1 NA 0.776913344029009 17 0.157188674565837 2 2 0 -5.76664701170671 LTS-027 chr17 25630389 27494082 1863694 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, TIAF1, NA NA NA NA NA NA NA NA NA LTS-027 PIGS, TRAF4, KIAA0100) 0.209323146048425 32 0.0911754556318608 0.825200682911609 3499 0.417941317907128 3 3 0 -6.88167914674045 LTS-027 NA NA NA NA LTS-027 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.282 1 NA NA NA NA NA LTS-027 chr17 27528620 27530504 1885 * character(0) 0.212 1 NA 0.265733056698016 42 0.0899647111097673 0 0 0 -5.76770453561391 LTS-027 chr17 27530505 27573746 43242 * character(0) NA 0 NA 1.008 1 NA NA NA NA NA LTS-027 chr17 27573747 33521070 5947324 * c(MIR365B, MIR3184, AA06, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, ABHD15, RFFL, TMEM132E, SPACA3, ANKRD13B, CPD, CRYBA1, SLC35G3, UNC45B, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, TBC1D29, GIT1, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, NLE1, FNDC8, RHOT1, COPRS, ADAP2, UTP6, PSMD11, NUFIP2, TAOK1, RAD51D, NA NA NA NA NA NA NA NA NA LTS-027 CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, MIR632, ZNF207, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, ZNF830, GOSR1) 0.219253254470534 60 0.094780082951503 0.772971058935406 5434 0.445181574806677 2 2 0 -6.88535156718279 LTS-027 NA NA NA NA LTS-027 chr17 33521071 33585669 64599 * c(SLC35G3, SLFN5) NA 0 NA 0.65 1 NA NA NA NA NA LTS-027 chr17 33585670 34433730 848061 * c(SLFN12L, C17orf50, SLFN13, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, PEX12, SLFN12, LYZL6, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, SLFN11, RASL10B) 0.206747392336264 15 0.1174950860168 0.660622212876604 1379 0.472392041791349 2 2 0 -6.75004647564218 LTS-027 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.116 1 NA NA NA NA NA LTS-027 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.356306991712569 39 0.736343555216613 0 NA NA -5.76662170840285 LTS-027 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.598 1 NA NA NA NA NA LTS-027 chr17 34842415 36233738 1391324 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.181155888177829 17 0.0622409927336525 0.800793641934456 1561 0.506297554028813 3 3 0 -6.79137812938627 LTS-027 chr17 36233739 36233775 37 * YWHAEP7 0.193 1 NA 0.312 1 NA NA NA NA NA LTS-027 chr17 36233776 36462602 228827 * c(YWHAEP7, LOC440434, MRPL45) 0.233329305348983 2 0.0905096679918781 0.376453931230641 103 0.3080996276279 1 1 0 -7.21705172295722 LTS-027 chr17 36462603 37265728 803126 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, C17orf98, LASP1, MLLT6, GPR179, FBXO47, CWC25, PSMB3, PLXDC1, ARHGAP23, SNORA21, PCGF2, SRCIN1, PIP4K2B, MRPL45, RPL23) 0.203245317367861 25 0.0556565958954253 0.893918980552881 1548 0.492337054231711 2 2 0 -6.8984445698949 LTS-027 chr17 37265729 37295914 30186 * PLXDC1 NA 0 NA 2.675 1 NA NA NA NA NA LTS-027 chr17 37295915 37564417 268503 * c(STAC2, ARL5C, MED1, PLXDC1, RPL19, CACNB1, FBXL20) 0.176 1 NA 1.19663947540759 463 0.547321992092973 5 5 0 -5.76781500028796 LTS-027 chr17 37564418 37690692 126275 * c(CDK12, MED1) 0.143 1 NA 0.837726375717023 329 0.442211599621488 3 3 0 -5.76648921254087 LTS-027 chr17 37690693 38554880 864188 * c(LRRC3C, MIR4728, SNORD124, STARD3, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, GSDMA, GRB7, MSL1, NEUROD2, RAPGEFL1, CDK12, PNMT, GSDMB, PSMD3, RARA, THRA, TOP2A, PPP1R1B, MIEN1, TCAP, PGAP3, ORMDL3, NR1D1, MED24, CDC6) 0.0980213720424752 17 0.0283411465582339 1.89854532949712 2261 0.999154318038914 7 7 0 -6.76927958384606 LTS-027 chr17 38554881 38783637 228757 * c(CCR7, IGFBP4, RARA, TOP2A, TNS4) 0.0805515919567289 4 0.141647449677006 0.941201440607404 404 0.633630989878415 5 5 0 -6.81313574837372 LTS-027 chr17 38783638 39389071 605434 * c(KRTAP4-9, KRTAP4-7, KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT39, KRT20, KRTAP4-11, SMARCE1, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.207703853939372 54 0.0840376130391087 0.660715426653389 1315 0.392331446442075 2 2 0 -6.75559804727136 LTS-027 chr17 39389072 39458424 69353 * c(KRTAP9-7, KRTAP9-6, KRTAP29-1, KRTAP9-9, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.268948835229752 9 0.022546864773425 0.420380569320175 85 0.276209247092257 5 4 1 -7.36438729475322 LTS-027 chr17 39458425 44360800 4902376 * c(LINC00910, MAP3K14-AS1, HDAC5, RAMP2-AS1, MIR2117, KRTAP16-1, LOC100505782, GJC1, KRTAP29-1, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, NT5C3B, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, CNP, CD300LG, KIF18B, RUNDC1, LINC00974, NAGS, FAM134C, DHX8, DUSP3, ZNF385C, ETV4, EZH1, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KAT2A, NA NA NA NA NA NA NA NA NA LTS-027 GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, KRT42P, PTRF, NKIRAS2, COA3, GRN, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, ASB16-AS1, IFI35, ITGA2B, JUP, ARL4D, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, CCDC103, KRT33B, KRT34, KRT35, NBR1, ADAM11, MEOX1, MPP2, MPP3, NAGLU, ACLY, NMT1, SOST, SLC25A39, HIGD1B, ATP6V0A1, KLHL11, PPY, PYY, ATXN7L3, RAB5C, FKBP10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 RPL27, SLC4A1, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, UBTF, FMNL1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, TMEM101, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2, HSPB9) 0.202452552376979 192 0.0754088217743532 0.877059514689908 9180 0.501540300116107 3 3 0 -6.83833057124464 LTS-027 NA NA NA NA LTS-027 chr17 44360801 44782233 421433 * character(0) 0.289168478056723 2 0.015556349186104 0.375435163876764 58 0.2063850947138 1 1 0 -7.81896833205112 LTS-027 chr17 44782234 44788331 6098 * character(0) NA 0 NA 1.089 1 NA NA NA NA NA LTS-027 chr17 44788332 49371472 4583141 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, CHAD, KAT7, NXPH3, SNF8, OSBPL7, WFIKKN2, FLJ40194, B4GALNT2, EFCAB13, MRPL10, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, HILS1, KPNB1, RPRML, TOB1-AS1, NA NA NA NA NA NA NA NA NA LTS-027 HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, NME1, NME2, UTP18, ABI3, COPZ2, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, MBTD1, LINC00483, EPN3, PNPO, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, UBE2Z, MRPL45P2, NME1-NME2, SP2, FLJ45513, WNT3, WNT9B, PRR15L, ACSF2, CDK5RAP3, SP6, FAM117A, SPOP, MYCBPAP, PRAC1, PPP1R9B, SKAP1, ABCC3, CACNA1G, SPAG9, LRRC46, SCRN2, ANKRD40, NPEPPS, GOSR2, TBKBP1, CDC27 NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 ) 0.228859729122481 143 0.0914800794946715 0.833879897222099 7463 0.506462739237301 3 3 0 -7.02093312829374 LTS-027 NA NA NA NA LTS-027 chr17 49371473 53239638 3868166 * c(TOM1L1, C17orf112, COX11, STXBP4, UTP18, CA10, KIF2B) 0.238104968059942 6 0.0992950149806122 0.605272834065366 372 0.442375884689131 2 2 0 -7.0130267602125 LTS-027 chr17 53239639 58176778 4937140 * c(MIR3614, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, CLTC, HSF5, OR4D2, MSI2, DYNLL2, ANKFN1, PPM1E, MMD, MTVR2, STXBP4, OR4D1, C17orf47, GDPD1, HLF, C17orf67, SKA2, RNF126P1, YPEL2, LPO, CUEDC1, MIR142, MIR21, MIR301A, MPO, TRIM37, RNFT1, TUBD1, MRPS23, PTRH2, SEPT4, RNF43, MKS1, SMG8, TMEM100, MSX2P1, PRR11, TEX14, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, SRSF1, WFDC21P, TBC1D3P1-DHX40P1, SUPT4H1, NA NA NA NA NA NA NA NA NA LTS-027 MIR454, TRIM25, VEZF1, DHX40, COIL, AKAP1, VMP1, EPX, DGKE, MTMR4, NOG, TSPOAP1) 0.20977260589327 33 0.0605200160978568 0.774677893829377 3453 0.42240124245812 2 2 0 -6.89765042956921 LTS-027 NA NA NA NA LTS-027 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.213 1 NA NA NA NA NA LTS-027 chr17 58177075 58179597 2523 * LOC653653 NA 0 NA 0.268281036923595 55 0.117035095027148 0 NA NA -5.76670270308823 LTS-027 chr17 58179598 58179698 101 * LOC653653 NA 0 NA 0.492 1 NA NA NA NA NA LTS-027 chr17 58179699 70120430 11940732 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, METTL2A, NACA2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, C17orf82, NA NA NA NA NA NA NA NA NA LTS-027 KCNJ2-AS1, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TACO1, AMZ2, PECAM1, FAM20A, BCAS3, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, INTS2, SCN4A, SMURF2, LOC653653, SMARCD2, SOX9, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, CACNG1, LIMD2, KCNH6, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.204805724906459 108 0.0640978127163133 0.769101042427306 6843 0.40781041011254 2 2 0 -7.08408014251298 LTS-027 NA NA NA NA LTS-027 chr17 70120431 75189720 5069290 * c(SMIM6, CD300LD, LOC100287042, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, MIR4738, CDK3, ATP5H, ST6GALNAC2, CD300C, CD300A, CYGB, RNF157, METTL23, USH1G, CD300LB, KIF19, MGAT5B, CD300LF, C17orf77, AANAT, SLC39A11, TRIM65, UNC13D, EVPL, FDXR, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GALK1, NAT9, LINC00469, FADS6, HID1, TSEN54, UBALD2, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, NA NA NA NA NA NA NA NA NA LTS-027 MRPL58, CD300E, OTOP3, GPR142, ZACN, ITGB4, BTBD17, LLGL2, LINC00511, LOC400620, MXRA7, ACOX1, MRPS7, HN1, SDK2, TMEM104, C17orf80, ST6GALNAC1, GPRC5C, PRPSAP1, MIF4GD, CASKIN2, SLC25A19, RPL38, UBE2O, SEC14L1, SRSF2, CPSF4L, SMIM5, DNAI2, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, ARMC7, RHBDF2, NUP85, MYO15B, QRICH2, FAM104A, MGC16275, FBF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 UNK, GALR2, SPHK1, TRIM47, SLC16A5, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, TMEM94) 0.205966400749356 180 0.0740463466520393 0.873119173532319 7180 0.503580210365304 3 3 0 -6.86916491795835 LTS-027 NA NA NA NA LTS-027 chr17 75189721 75190714 994 * SEC14L1 NA 0 NA 1.84 1 NA NA NA NA NA LTS-027 chr17 75190715 75834853 644139 * c(MIR4316, LOC100507351, SEPT9, SEC14L1) 0.133765345810953 9 0.0265790226389994 1.17726030188169 296 0.552841847604832 4 4 0 -6.78452585888946 LTS-027 chr17 75834854 75878005 43152 * FLJ45079 NA 0 NA 3.271 1 NA NA NA NA NA LTS-027 chr17 75878006 76490312 612307 * c(TNRC6C-AS1, C17orf99, LOC100996291, DNAH17-AS1, TMC6, AFMID, TMC8, TMEM235, BIRC5, FLJ45079, TNRC6C, TK1, DNAH17, SOCS3, SYNGR2, PGS1) 0.0913564460231276 15 0.0330447027668941 2.24896155138688 1008 1.08015799357339 7 7 0 -6.75869958433858 LTS-027 chr17 76490313 76490631 319 * c(DNAH17-AS1, DNAH17) NA 0 NA 0.702 1 NA NA NA NA NA LTS-027 chr17 76490632 79687165 3196534 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, DNAH17-AS1, BAIAP2, C1QTNF1, SLC38A10, CANT1, TBC1D16, TEPSIN, RBFOX3, SLC25A10, CEP131, GAA, FSCN2, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, ENPP7, OXLD1, CCDC137, ARL16, AATK-AS1, LGALS3BP, BAIAP2-AS1, MIR338, NPTX1, PDE6G, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, MRPL12, SGSH, ENGASE, NA NA NA NA NA NA NA NA NA LTS-027 TIMP2, ACTG1, MIR657, CARD14, CHMP6, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, HGS, CYTH1, AATK, EIF4A3) 0.210892866903837 108 0.0519009427408607 0.903571310664408 4356 0.492520447458693 3 3 0 -7.05303923420468 LTS-027 NA NA NA NA LTS-027 chr17 79687166 79766863 79698 * c(SLC25A10, GCGR) NA 0 NA 2.518 1 NA NA NA NA NA LTS-027 chr17 79766864 79881065 114202 * c(ALYREF, PPP1R27, NPB, GCGR, MCRIP1, ARHGDIA, MAFG, P4HB, ANAPC11, SIRT7, PCYT2) 0.073 1 NA 1.61150967684179 392 0.828428687199472 7 7 0 -5.76463672739593 LTS-027 chr17 79881066 79890748 9683 * c(MAFG, PYCR1, MAFG-AS1) NA 0 NA 0.661 1 NA NA NA NA NA LTS-027 chr17 79890749 80159665 268917 * c(NOTUM, CENPX, LRRC45, FASN, MYADML2, CCDC57, GPS1, DCXR, PYCR1, RAC3, RFNG, DUS1L, ASPSCR1) 0.217739313783908 51 0.085542462795833 0.851283583069601 1117 0.49619524309017 2 2 0 -6.75695654999686 LTS-027 chr17 80159666 80350485 190820 * c(CSNK1D, UTS2R, CCDC57, TEX19, SECTM1, OGFOD3, SLC16A3, CD7) NA 0 NA 0.820692168272076 224 0.320491066213368 3 NA NA -5.77420354296107 LTS-027 chr17 80350486 80386556 36071 * c(HEXDC, OGFOD3) NA 0 NA 2.01035416937476 57 1.21869143609695 9 NA NA -5.7644292525886 LTS-027 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.569 1 NA NA NA NA NA LTS-027 chr17 80391535 81083625 692091 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) NA 0 NA 0.954301774624781 899 0.461265366095566 3 NA NA -5.77074926818413 LTS-027 chr18 116845 122129 5285 * ROCK1P1 NA 0 NA 0.556865703045191 53 0.324367435089127 1 NA NA -5.76467484775597 LTS-027 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.906 1 NA NA NA NA NA LTS-027 chr18 122232 346821 224590 * c(COLEC12, USP14, THOC1) 0.405 1 NA 1.31538997818936 203 0.545034775094697 5 5 0 -5.76451253064614 LTS-027 chr18 346822 6975032 6628211 * c(LINC01387, MIR4317, MIR3976, DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, LINC00526, DLGAP1-AS3, EPB41L3, SMCHD1, CLUL1, DLGAP1-AS5, LAMA1, LINC00667, LINC00668, TYMSOS, ENOSF1, LINC00470, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, TGIF1, LOC727896, TYMS, YES1, ZBTB14, ARHGAP28, COLEC12, EMILIN2, MYOM1, L3MBTL4, DLGAP1, LPIN2) 0.276411693311915 66 0.0617872600231269 1.27416472708316 2624 1.05566124877862 5 4 1 -6.7374255875473 LTS-027 chr18 6975033 6975927 895 * LAMA1 NA 0 NA 2.309 1 NA NA NA NA NA LTS-027 chr18 6975928 8069868 1093941 * c(LAMA1, LRRC30, PTPRM) 0.256932019112091 11 0.0385519720047438 1.59435796004617 333 0.807170059972841 9 7 2 -6.82223909266156 LTS-027 chr18 8069869 8343530 273662 * PTPRM 0.182 1 NA 1.40403301209723 83 0.816593976406788 6 6 0 -5.76533860586933 LTS-027 chr18 8343531 14866503 6522973 * c(LOC100192426, LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.197057856009454 66 0.0753311523705998 1.67779638483988 3522 1.06990517224494 7 6 1 -6.74682145326314 LTS-027 chr18 14866504 15006193 139690 * character(0) NA 0 NA 2.54383051512107 33 1.14043005826882 11 NA NA -5.76445325298069 LTS-027 chr18 18529727 18529837 111 * ROCK1 0.388 1 NA 0.33701252421696 3 0.0515396287659635 0 0 0 -5.76458545421832 LTS-027 chr18 18529838 18535115 5278 * ROCK1 NA 0 NA 0.403502556553186 52 0.177102261875414 1 NA NA -5.76967206623905 LTS-027 chr18 18535116 20876037 2340922 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, CABLES1) 0.307565652643615 17 0.0646567293254061 1.08040677943723 1062 0.50961121222869 4 3 1 -6.75743915525929 LTS-027 chr18 20876038 20876180 143 * TMEM241 NA 0 NA 3.584 1 NA NA NA NA NA LTS-027 chr18 20876181 21109324 233144 * c(C18orf8, NPC1, TMEM241, RIOK3) 0.276008543119333 6 0.0567218358894233 1.5313854674331 285 0.978471288385213 5 4 1 -6.74045600964426 LTS-027 chr18 21109325 21109514 190 * c(C18orf8, NPC1) NA 0 NA 0.897 1 NA NA NA NA NA LTS-027 chr18 21109515 22058192 948678 * c(MIR320C2, OSBPL1A, TTC39C, ANKRD29, CABYR, C18orf8, LAMA3, NPC1, IMPACT, HRH4) 0.335025677761594 18 0.108123688552249 0.968848319862765 1195 0.522834578113394 4 3 1 -6.77696548566763 LTS-027 chr18 22058193 25563096 3504904 * c(CDH2, PSMA8, AQP4-AS1, ZNF521, KCTD1, AQP4, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.298588959290566 7 0.092345108411973 1.26936387881841 675 0.724792015892691 5 4 1 -6.78491758080777 LTS-027 chr18 25563097 32470459 6907363 * c(CDH2, MIR302F, DSG2-AS1, SLC25A52, DSG4, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, ASXL3, NOL4, B4GALT6) 0.361850444220478 30 0.113247343984485 0.832542163843204 2433 0.504922587705088 3 2 1 -6.86179945879031 LTS-027 chr18 32470460 32558525 88066 * c(MAPRE2, DTNA) 0.487 1 NA 0.766646616601761 5 0.355289037264028 2 2 0 -5.76742779083415 LTS-027 chr18 32558526 33552163 993638 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, ZNF396, GALNT1, MIR187, ZNF24, ZNF397) NA 0 NA 0.763602165357524 693 0.416830015724666 2 NA NA -5.78681056991609 LTS-027 chr18 33552164 48702700 15150537 * c(SNORD58C, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, SKA1, CFAP53, SLC39A6, TPGS2, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, MEX3C, PIK3C3, DYM, MOCOS, RPRD1A, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, NA NA NA NA NA NA NA NA NA LTS-027 EPG5, RIT2, RPL17, KC6, MIR924HG, SKOR2, SLC14A1, SCARNA17, SYT4, FHOD3, SLC14A2, KATNAL2, C18orf21, MRO, HDHD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.302148143686098 79 0.0892718079586301 0.569872768002826 5158 0.374908188796682 1 1 0 -7.50750240974388 LTS-027 NA NA NA NA LTS-027 chr18 48702701 48702712 12 * MEX3C NA 0 NA 0.41 1 NA NA NA NA NA LTS-027 chr18 48702713 52570765 3868053 * c(LINC01630, POLI, STARD6, C18orf54, DCC, DYNAP, MEX3C, RAB27B, SNORA37, CCDC68, MBD2) 0.290863435364881 10 0.111041984052079 0.405740655345362 850 0.214826552654349 1 1 0 -8.56070450561062 LTS-027 chr18 52570766 61271839 8701074 * c(LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TCF4, CCDC68, TNFRSF11A, SERPINB12, SEC11C, TXNL1, ONECUT2, VPS4B) 0.304802517187843 103 0.0922186822761323 0.512032218058252 4110 0.279120034309388 1 1 0 -6.73947704781672 LTS-027 chr18 61271840 61304514 32675 * SERPINB4 NA 0 NA 0.154 1 NA NA NA NA NA LTS-027 chr18 61304515 61323152 18638 * c(SERPINB3, SERPINB4) NA 0 NA 0.172538149708041 65 0.0967214154752631 0 NA NA -6.14850350970264 LTS-027 chr18 61323153 61323202 50 * c(SERPINB3, SERPINB4) NA 0 NA 0.295 1 NA NA NA NA NA LTS-027 chr18 61323203 63429935 2106733 * c(CDH7, LINC00305, HMSD, LOC284294, LINC01538, SERPINB2, SERPINB8, SERPINB10, SERPINB3, SERPINB4, SERPINB7, SERPINB11) 0.310346005092078 28 0.0920961367957333 0.38664822710763 400 0.29331266897195 1 1 0 -7.65695245217072 LTS-027 chr18 63429936 64748929 1318994 * c(CDH7, MIR5011, CDH19) 0.364073852711838 7 0.0522261565556133 0.237741369870577 307 0.138754695231888 0 0 0 -9.55074808689583 LTS-027 chr18 64748930 67529217 2780288 * c(DOK6, TMX3, LOC643542, CCDC102B, DSEL) 0.277079995822775 14 0.115954353466837 0.567675564372999 424 0.375683299766623 1 1 0 -6.9158097739969 LTS-027 chr18 67529218 67530439 1222 * CD226 0.14 1 NA 0.48389046933325 25 0.144898320671198 1 1 0 -5.76448634840575 LTS-027 chr18 67530440 71807614 4277175 * c(LINC01541, LOC100505817, CD226, CBLN2, FBXO15, RTTN, LOC400655, NETO1, SOCS6) 0.230123533663725 13 0.0482409816203226 0.606742230159465 640 0.315392121923178 2 2 0 -7.28307346728549 LTS-027 chr18 71807615 71814920 7306 * FBXO15 NA 0 NA 1.72 1 NA NA NA NA NA LTS-027 chr18 71814921 77917264 6102344 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, FAM69C, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, PARD6G, CNDP1, CTDP1, ZNF516) 0.208673313258899 59 0.0759323655494219 0.765514612880265 2427 0.458241641751702 2 2 0 -6.86557195678396 LTS-027 chr18 77917265 78005362 88098 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.75475995870196 61 0.312230704076819 2 NA NA -5.76701302695098 LTS-027 chr19 107416 374547 267132 * c(LINC01002, THEG, MIER2, OR4F17, PLPP2) 0.241 1 NA 0.611311401009277 143 0.330741563576877 2 2 0 -5.79360097872549 LTS-027 chr19 374548 7995934 7621387 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, TGFBR3L, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, NA NA NA NA NA NA NA NA NA LTS-027 MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, GADD45B, NFIC, NRTN, OAZ1, FLJ25758, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, PCSK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, TLE6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.288531690888453 326 0.0763169044860643 0.686756655263525 13647 0.443173307114338 2 2 0 -7.19527063004999 LTS-027 NA NA NA NA LTS-027 chr19 7995935 8067026 71092 * c(TIMM44, ELAVL1) NA 0 NA 0.668819426404794 76 0.360661932144558 2 NA NA -5.76528257789756 LTS-027 chr19 8067027 8152725 85699 * c(ELAVL1, CCL25, FBN3) 0.483 1 NA 1.01871956101454 105 0.570894882326569 4 4 0 -5.76530887963831 LTS-027 chr19 8152726 8807832 655107 * c(RAB11B-AS1, MIR4999, KANK3, ACTL9, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, RPS28, CERS4, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B) 0.420839847027764 38 0.04961017309522 1.05758230427325 1052 0.505087686381895 4 2 2 -6.74929095908032 LTS-027 chr19 8807833 9868693 1060861 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, ZNF846, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, MBD3L1, ZNF561, MUC16) 0.416963061519856 84 0.0716912004864927 0.670259643709797 2061 0.418600264438584 2 1 1 -6.75721898732469 LTS-027 chr19 9868694 9868726 33 * ZNF846 NA 0 NA 0.84 1 NA NA NA NA NA LTS-027 chr19 9868727 10421311 552585 * c(SNORD105B, ZGLP1, MIR4322, FDX1L, ZNF846, DNMT1, ICAM1, ICAM4, C3P1, P2RY11, COL5A3, RDH8, MRPL4, PIN1, FBXL12, C19orf66, PPAN, UBL5, SNORD105, PPAN-P2RY11, ICAM5, ANGPTL6, EIF3G, S1PR2, OLFM2) 0.409177261540148 47 0.0793618453520791 0.907943488119284 1342 0.511839906658126 3 2 1 -6.78259254428468 LTS-027 chr19 10421312 10421462 151 * FDX1L NA 0 NA 1.236 1 NA NA NA NA NA LTS-027 chr19 10421463 11687420 1265958 * c(MIR1181, MIR1238, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM3, ILF3, TMEM205, LDLR, MIR199A1, ECSIT, PDE4A, S1PR5, ACP5, PRKCSH, ANGPTL8, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, MIR638, TYK2, YIPF2, QTRT1, ELOF1, ATG4D, C19orf52, RAB3D, KEAP1) 0.436315572961808 59 0.0898534133210704 1.05860133887471 2902 0.600668783869974 4 2 2 -6.7405340760198 LTS-027 chr19 11687421 12494440 807020 * c(ZNF625-ZNF20, ZNF441, ZNF491, ZNF440, ZNF563, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.418933190029377 19 0.0672281182470619 0.661938117341585 1292 0.586026791545403 2 1 1 -6.75039482683519 LTS-027 chr19 12494441 12494456 16 * ZNF799 NA 0 NA 0.47 1 NA NA NA NA NA LTS-027 chr19 12494457 12544065 49609 * c(ZNF443, ZNF799) 0.37696868614855 12 0.0727092070365149 0.352039812078578 115 0.188236834933906 0 0 0 -7.03343270979464 LTS-027 chr19 12544066 12551710 7645 * ZNF443 NA 0 NA 0.536 1 NA NA NA NA NA LTS-027 chr19 12551711 12740347 188637 * c(ZNF443, ZNF791, ZNF564, ZNF709, ZNF490) 0.444163099007823 6 0.0752799220686809 0.755018522792125 315 0.566526319753648 2 1 1 -6.76081493428679 LTS-027 chr19 12740348 12740567 220 * ZNF791 NA 0 NA 1.079 1 NA NA NA NA NA LTS-027 chr19 12740568 14826394 2085827 * c(LOC100507373, DDX39A, RNASEH2A, KLF1, GIPC1, NACC1, MISP3, RLN3, ZNF791, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, SYCE2, GCDH, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, NA NA NA NA NA NA NA NA NA LTS-027 PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.41147443840154 42 0.123430965531476 0.985000998015707 3672 0.574712044345527 3 2 1 -6.78756071108989 LTS-027 NA NA NA NA LTS-027 chr19 14826395 14826873 479 * ZNF333 NA 0 NA 0.606 1 NA NA NA NA NA LTS-027 chr19 14826874 15053224 226351 * c(OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, OR7A10, ZNF333) 0.450631413648789 8 0.0285378820918041 0.662974901746358 266 0.334949383280807 2 1 1 -7.08006107665752 LTS-027 chr19 15053225 15582868 529644 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, OR1I1, CCDC105, BRD4, CASP14, OR7C2, AKAP8L, NOTCH3, WIZ, RASAL3, SLC1A6, EPHX3, SYDE1) 0.44479637543303 31 0.0433527169219661 0.966867373032016 1116 0.427760532467365 4 2 2 -6.84548777584212 LTS-027 chr19 15582869 15586305 3437 * PGLYRP2 NA 0 NA 0.594 1 NA NA NA NA NA LTS-027 chr19 15586306 16146800 560495 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.450364711668907 14 0.0327230301667908 0.712421638271668 557 0.310600907589232 2 1 1 -6.99153178743182 LTS-027 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 2.568 1 NA NA NA NA NA LTS-027 chr19 16178447 19309138 3130692 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, KLF2, IFI30, CHERP, CERS1, COPE, CCDC124, NXNL1, CIB3, CALR3, LRRC25, ANKLE1, COMP, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, GDF1, SNORA68, ARRDC2, CPAMD8, NWD1, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, BORCS8-MEF2B, RAB8A, MYO9B, PDE4C, ISYNA1, PIK3R2, DDX49, PGPEP1, TMEM161A, NA NA NA NA NA NA NA NA NA LTS-027 C19orf60, MAP1S, KLHL26, USE1, ANO8, EPS15L1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, TPM4, LOC729966, BORCS8, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, GTPBP3, MPV17L2, HSH2D, RFXANK, AP1M1, F2RL3, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, GDF15) 0.42993667431288 125 0.0735577219033658 1.02230321405391 5952 0.513954803055259 4 2 2 -6.76988978340057 LTS-027 NA NA NA NA LTS-027 chr19 19309139 19309357 219 * RFXANK NA 0 NA 0.49 1 NA NA NA NA NA LTS-027 chr19 19309358 24345092 5035735 * c(HAVCR1P1, ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, NR2C2AP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, MAU2, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, RPSAP58, LINC00664, HAPLN4, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, TM6SF2, GATAD2A, ZNF253, ATP13A1, ZNF492, SUGP1, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, NA NA NA NA NA NA NA NA NA LTS-027 PBX4, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ZNF101, ZNF254) 0.440158989392504 73 0.0721295210591279 0.836361065095486 2822 0.495159470145533 2 1 1 -7.09275826699077 LTS-027 NA NA NA NA LTS-027 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.306721224608625 3 0.0265581123827228 0 NA NA -5.7644126023345 LTS-027 chr19 28247625 30021023 1773399 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.398 1 NA 1.14844758131555 47 0.777242375020955 4 4 0 -5.76787758475373 LTS-027 chr19 30021024 31769763 1748740 * c(POP4, VSTM2B, TSHZ3, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.431106880164954 12 0.0731165010601077 1.10864070251371 470 0.570170763051074 4 2 2 -6.73409813552861 LTS-027 chr19 31769764 32131065 361302 * c(THEG5, TSHZ3) NA 0 NA 1.28904504858381 55 0.692423039275749 5 NA NA -5.7644223936887 LTS-027 chr19 32843747 33072118 228372 * c(DPY19L3, ZNF507, LOC400684, PDCD5) 0.182 1 NA 0.707258341291614 167 0.295191730176151 2 2 0 -5.76443917708795 LTS-027 chr19 33072119 34991091 1918973 * c(UBA2, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, LSM14A, GPI, RGS9BP, NUDT19, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, PDCD5, FAAP24, TDRD12, KIAA0355) 0.216247255324148 35 0.0921536896765854 0.874386974602298 1615 0.576592008078374 3 3 0 -6.87171428393819 LTS-027 chr19 34991092 35233572 242481 * c(SCGB2B3P, WTIP, SCGB2B2, ZNF181, ZNF302, SCGB1B2P) 0.240816954386815 2 0.0558614357137373 0.510065314606769 147 0.294563235283452 2 2 0 -6.984167064677 LTS-027 chr19 35233573 35233662 90 * ZNF181 NA 0 NA 1.406 1 NA NA NA NA NA LTS-027 chr19 35233663 37619950 2386288 * c(HPN-AS1, LINC01531, LOC100134317, TMEM147-AS1, LINC00665, LINC00904, MIR5196, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, ZNF599, FAM187B, PROSER3, ZNF567, LGI4, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF181, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NA NA NA NA NA NA NA NA NA LTS-027 LOC400685, MAG, NPHS1, ATP4A, LSR, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, PSENEN, LIN37, GRAMD1A, ZFP14, ZNF529, HAMP, PRODH2, SCN1B, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, USF2, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF30, ZNF461, DMKN, CD22, KMT2B) 0.208612912356446 123 0.0706368962008622 0.834951555539332 4629 0.479245119912522 2 2 0 -6.92430835438756 LTS-027 NA NA NA NA LTS-027 chr19 37619951 37620038 88 * ZNF420 NA 0 NA 0.589 1 NA NA NA NA NA LTS-027 chr19 37620039 37681171 61133 * c(ZNF420, ZNF585A, ZNF585B) 0.23141485037286 4 0.0507764709289647 0.441167707209338 159 0.237998956351211 2 2 0 -6.90116883489869 LTS-027 chr19 37681172 37689831 8660 * ZNF585B NA 0 NA 1.014 1 NA NA NA NA NA LTS-027 chr19 37689832 38610023 920192 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, SIPA1L3, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.200932604766418 17 0.0609831220623427 0.73177691908507 996 0.353077989244688 2 2 0 -6.79811982443158 LTS-027 chr19 38610024 39912907 1302884 * c(MIR4530, IFNL4, PAK4, SPINT2, MAP4K1, FBXO17, RASGRP4, RINL, FBXO27, FAM98C, CAPN12, ECH1, GGN, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, HNRNPL, NCCRP1, SYCN, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, PAF1, SARS2, SAMD4B, MED29, PSMD8, LRFN1, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, PLEKHG2, LGALS7B, ZFP36, ACTN4, DPF1, YIF1B, KCNK6, PPP1R14A, GMFG) 0.180558163161824 47 0.0648903508375659 0.965436072743081 2905 0.518891822686273 3 3 0 -6.75718977071999 LTS-027 chr19 39912908 39913366 459 * PLEKHG2 NA 0 NA 0.645 1 NA NA NA NA NA LTS-027 chr19 39913367 40384193 470827 * c(LOC100129935, DLL3, CLC, EID2B, LGALS16, EID2, FBL, LGALS13, LEUTX, SELENOV, LGALS17A, LGALS14, RPS16, PLEKHG2, SUPT5H, FCGBP, DYRK1B, TIMM50) 0.205859449442338 19 0.0917363690338176 0.808649141934026 770 0.448350617541838 2 2 0 -6.77416011014045 LTS-027 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.221 1 NA NA NA NA NA LTS-027 chr19 40389650 40405934 16285 * FCGBP 0.0334792718020451 3 0.0239652526240249 0.32773352270457 39 0.71791952285444 20 20 0 -6.86463605141035 LTS-027 chr19 40405935 40406033 99 * FCGBP NA 0 NA 1.823 1 NA NA NA NA NA LTS-027 chr19 40406034 40698345 292312 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.197306110575999 6 0.0282942868202517 0.642685382627025 556 0.394514574337669 2 2 0 -7.10795241753408 LTS-027 chr19 40698346 41950189 1251844 * c(ERICH4, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AKT2, CYP2G1P, PLD3, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.210067782203148 68 0.0610970007698649 0.945821420923102 2577 0.486336197501935 3 3 0 -6.9651681312278 LTS-027 chr19 41950190 41962265 12076 * c(ERICH4, PCAT19) NA 0 NA 0.728 1 NA NA NA NA NA LTS-027 chr19 41962266 42315025 352760 * c(PCAT19, CEACAM5, CEACAM3, CEACAM7, CEACAM4, CEACAM6, CEACAM21) 0.233086985116688 5 0.0373991978523604 0.581797295542452 295 0.299784646060477 2 2 0 -6.88942761486792 LTS-027 chr19 42315026 43023039 708014 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM3, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.205326764998148 17 0.0494849204600874 0.912165028179277 1767 0.601916604304151 2 2 0 -6.86336889358432 LTS-027 chr19 43023040 43882874 859835 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P) 0.135326473004296 7 0.0816000700279812 0.516357654941655 298 0.395482679639605 2 2 0 -7.62101250162493 LTS-027 chr19 43882875 43883164 290 * character(0) NA 0 NA 0.698 1 NA NA NA NA NA LTS-027 chr19 43883165 44335631 452467 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, ZNF283, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF576, TEX101) 0.238910994990668 9 0.0519698096120345 0.933705880970231 787 0.409389227526564 2 2 0 -6.9369693198338 LTS-027 chr19 44335632 44339578 3947 * ZNF283 NA 0 NA 0.549 1 NA NA NA NA NA LTS-027 chr19 44339579 44983683 644105 * c(LOC100379224, LOC100505715, ZNF234, ZNF285, ZNF283, ZNF404, ZNF284, ZNF233, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.245330111551562 26 0.0723321079891485 0.651789474041664 1028 0.294594911835077 2 2 0 -6.83181247123186 LTS-027 chr19 44983684 44988558 4875 * ZNF180 NA 0 NA 2.319 1 NA NA NA NA NA LTS-027 chr19 44988559 51607904 6619346 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, KLK11, CLASRP, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, NA NA NA NA NA NA NA NA NA LTS-027 CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, IRF2BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, GPR32, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, C19orf81, APOC2, APOE, KLK3, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SIGLEC16, LOC400710, BCAM, MIR150, KLK14, KLK12, MIR330, IGFL4, MYBPC2, NOVA2, NPAS1, NTF4, NUCB1, SHANK1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, CABP5, PRRG2, KLK7, KLK6, KLK10, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 KLKP1, RPL18, RPS11, RRAS, RTN2, CLEC11A, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, C5AR1, TULP2, CCDC61, NR1H2, VASP, MIR769, CA11, ZNF180, TRAPPC6A, FKRP, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CTU1, CYTH2, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, NAPSA, CD37, KLK4, DHX34) 0.203116746993415 303 0.067070107974022 0.967474449856739 13040 0.525026610495148 3 3 0 -6.93103197214096 LTS-027 NA NA NA NA LTS-027 chr19 51607905 51628192 20288 * c(SIGLEC9, CTU1) NA 0 NA 0.529 1 NA NA NA NA NA LTS-027 chr19 51628193 52887146 1258954 * c(SIGLEC14, LOC100129083, CLDND2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF836, ZNF610, ETFB, FPR1, FPR2, FPR3, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, HAS1, LIM2, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, NKG7, PPP2R1A, ZNF350, ZNF649, MIR643, CEACAM18, LINC01530, ZNF175, ZNF613, ZNF614, ZNF577, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, CD33, SIGLEC6, ZNF432) 0.236498516077816 52 0.0769899481206078 0.747993299870593 2036 0.457413725063676 2 2 0 -6.77328968879194 LTS-027 chr19 52887147 53514085 626939 * c(ZNF816-ZNF321P, ZNF816, ZNF534, ZNF578, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF468) 0.209075270592453 19 0.0861924271785171 0.583121420338012 676 0.388445131514399 2 2 0 -6.83027819430751 LTS-027 chr19 53514086 53517324 3239 * character(0) NA 0 NA 0.251 1 NA NA NA NA NA LTS-027 chr19 53517325 53553859 36535 * c(ERVV-2, ERVV-1) NA 0 NA 0.264008520630084 54 0.180759641149852 0 NA NA -5.78156486059448 LTS-027 chr19 53553860 53905495 351636 * c(ERVV-2, BIRC8, ZNF525, VN1R2, VN1R4, ZNF677, ZNF818P, ZNF415, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, ZNF845) 0.189365924606501 23 0.039136378556047 0.667361858201402 598 0.566937543576302 3 3 0 -6.90818819903969 LTS-027 chr19 53905496 53910874 5379 * ZNF765 NA 0 NA 0.396 1 NA NA NA NA NA LTS-027 chr19 53910875 53996325 85451 * c(ZNF813, TPM3P9, ZNF761, ZNF765) 0.234186917076791 4 0.0409501729748077 0.422786728901461 170 0.42823973189993 2 2 0 -6.87531408749183 LTS-027 chr19 53996326 53996406 81 * ZNF813 NA 0 NA 0.955 1 NA NA NA NA NA LTS-027 chr19 53996407 54724693 728287 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB3, OSCAR, ZNF813, TMC4, PRPF31, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, NA NA NA NA NA NA NA NA NA LTS-027 MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.205508756584002 40 0.0677438189062294 0.839882887982287 1649 0.496670911020595 2 2 0 -6.81513690410304 LTS-027 NA NA NA NA LTS-027 chr19 54724694 54725685 992 * c(LILRB3, LILRA6) NA 0 NA 0.355 1 NA NA NA NA NA LTS-027 chr19 54725686 54744435 18750 * c(LILRB3, LILRA6) 0.426412262922186 7 0.101387047167443 0.2085100978327 52 0.238676775825069 0 0 0 -6.76410274487916 LTS-027 chr19 54744436 54745437 1002 * c(LILRB3, LILRA6) NA 0 NA 0.746 1 NA NA NA NA NA LTS-027 chr19 54745438 55336568 591131 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.267214426536087 65 0.0995029667126332 0.64726451015757 1315 0.411843518124313 2 2 0 -6.87956880598285 LTS-027 chr19 55336569 55358615 22047 * c(KIR2DS4, KIR3DL1) 0.318 1 NA 0.232187129947541 39 0.350338947117996 0 0 0 -5.7733714230589 LTS-027 chr19 55358616 55358645 30 * c(KIR2DS4, KIR3DL1) 0.235 1 NA 1.532 1 NA NA NA NA NA LTS-027 chr19 55358646 55536646 178001 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, GP6, NLRP2, NCR1) 0.331402627745525 26 0.10571328422454 0.738668712611044 386 0.378399344687979 4 3 1 -6.85500935424106 LTS-027 chr19 55536647 56270508 733862 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.197491836979165 45 0.0530753990074307 0.945074298910272 2144 0.475684213127947 3 3 0 -6.87312403717225 LTS-027 chr19 56270509 56273088 2580 * RFPL4A NA 0 NA 0.388 1 NA NA NA NA NA LTS-027 chr19 56273089 56290338 17250 * c(RFPL4A, RFPL4AL1) 0.223650051492049 11 0.105929307473514 0.338845010022299 87 0.232961857274248 2 2 0 -6.83406999291377 LTS-027 chr19 56290339 56296995 6657 * NLRP11 NA 0 NA 0.717 1 NA NA NA NA NA LTS-027 chr19 56296996 58508945 2211950 * c(MIMT1, ZNF667-AS1, PEG3-AS1, ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF550, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, ZSCAN5B, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF444, ZNF416, VN1R1, ZNF304, ZNF471, USP29, NA NA NA NA NA NA NA NA NA LTS-027 ZNF71, ZNF667, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZSCAN5A, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, GALP, ZNF551, ZNF835, ZNF264) 0.214065356157958 78 0.0846906891016529 0.679823795922995 3492 0.857601288127334 2 2 0 -6.7382977100694 LTS-027 NA NA NA NA LTS-027 chr19 58508946 58509045 100 * ZNF606 NA 0 NA 0.797 1 NA NA NA NA NA LTS-027 chr19 58509046 58991900 482855 * c(A1BG, LOC100128398, MIR4754, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, ZNF544, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, ZNF132, ZNF135, ZNF329, ZNF606) 0.195919797236798 28 0.0786805543297048 0.822546048236625 1077 0.415563216219974 3 3 0 -6.80219546896569 LTS-027 chr19 58991901 59084001 92101 * c(MZF1-AS1, TRIM28, SLC27A5, CHMP2A, ZNF446, MZF1, ZBTB45, UBE2M) NA 0 NA 0.781171488134862 277 0.333773126226061 2 NA NA -5.7697391727859 LTS-027 chr20 68260 76962 8703 * DEFB125 0.365 1 NA 0.574981088021902 11 0.440693193626917 1 1 0 -5.76483517797262 LTS-027 chr20 76963 240050 163088 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) 0.407789522722122 9 0.067468511173732 0.46287219035235 98 0.286263848675097 0 0 0 -6.97523809923522 LTS-027 chr20 240051 240137 87 * DEFB132 NA 0 NA 0.951 1 NA NA NA NA NA LTS-027 chr20 240138 1099398 859261 * c(RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, CSNK2A1, RSPO4, DEFB132, ANGPT4, TRIB3, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1) 0.447225745803135 35 0.0422579513675416 1.34242168531193 1116 0.756021740993396 6 3 3 -6.85954752562075 LTS-027 chr20 1099399 1099429 31 * PSMF1 NA 0 NA 1.026 1 NA NA NA NA NA LTS-027 chr20 1099430 3129764 2030335 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, NOP56, TMC2, SIRPD, C20orf141, SIRPA, STK35, FKBP1A, UBOX5, SDCBP2, GNRH2, SIRPB2, IDH3B, TGM6, C20orf202, OXT, PDYN, AVP, TMEM74B, SIRPG, NSFL1C, CPXM1, EBF4, PTPRA, FASTKD5, RAD21L1, VPS16, PCED1A, MRPS26, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, PSMF1, SNPH) 0.432832813130213 65 0.103646681641935 1.12883184170873 2396 0.547098942693798 4 2 2 -6.73710901353814 LTS-027 chr20 3129765 3129777 13 * c(UBOX5-AS1, UBOX5, FASTKD5) NA 0 NA 1.351 1 NA NA NA NA NA LTS-027 chr20 3129778 3914148 784371 * c(UBOX5-AS1, MIR103B2, CENPB, RNF24, HSPA12B, UBOX5, SPEF1, C20orf194, ITPA, MIR103A2, C20orf27, AP5S1, MAVS, FASTKD5, GFRA4, DDRGK1, SIGLEC1, PANK2, ADAM33, SLC4A11, ATRN, LZTS3, CDC25B) 0.456789897793775 60 0.0422950892689824 1.36210711461434 1890 0.62229067617253 6 3 3 -7.00145627799502 LTS-027 chr20 3914149 8865567 4951419 * c(PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, TMEM230, PCNA, TRMT6, HAO1, SMOX, CRLS1, FERMT1, PRNP, TMX4, GPCPD1, LOC643406, BMP2, LINC01433, MCM8, CDS2, RASSF2, SLC23A2) 0.439009611762813 72 0.0518128912938214 1.12464349651754 2386 0.625819435448608 4 2 2 -6.76207985948444 LTS-027 chr20 8865568 9386063 520496 * PLCB4 0 1 NA 1.05447815397424 81 0.543054507813709 4 4 0 -5.76618824455562 LTS-027 chr20 9386064 14304563 4918500 * c(SNAP25-AS1, ISM1-AS1, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, LAMP5, LOC339593, ESF1, PLCB4, SPTLC3, TASP1, PAK5, ANKEF1, SNAP25, NDUFAF5, SEL1L2, MKKS) 0.391981888230633 23 0.133543807855702 1.15678056916015 1551 0.638310928348188 4 2 2 -6.7966398450649 LTS-027 chr20 14304564 24988419 10683856 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, SEC23B, POLR3F, RBBP9, DSTN, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, FLRT3, CFAP61, SNX5, LOC284788, LINC00652, NXT1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, RIN2, DZANK1, KIF16B, KIZ, OTOR, NA NA NA NA NA NA NA NA NA LTS-027 APMAP, RALGAPA2, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, NAPB, GZF1, NKX2-4, SNRPB2, SSTR4, SNORD17, THBD, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, MGME1, DTD1) 0.358873988516884 64 0.0901999047530557 0.946721919133188 4286 0.527362076285287 3 2 1 -6.8428907589215 LTS-027 NA NA NA NA LTS-027 chr20 24988420 26188981 1200562 * c(LOC100134868, NANP, NCOR1P1, NINL, ABHD12, ZNF337, LOC284798, FAM182A, MIR663AHG, VSX1, PYGB, MIR663A, FAM182B, ACSS1, ENTPD6, GINS1) 0.353413903572753 39 0.0846357121945427 1.16090645281399 1045 0.664250290725315 4 3 1 -6.82888350723567 LTS-027 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.947464473839525 3 0.0115470053837925 3 NA NA -5.76483471884437 LTS-027 chr20 29625845 29625852 8 * FRG1BP 0.149 1 NA 1.222 1 NA NA NA NA NA LTS-027 chr20 29625853 29652219 26367 * c(MLLT10P1, FRG1BP) 0.281748407150606 23 0.122605363254689 0.917462364786806 56 0.632704050551611 5 4 1 -6.74170948942829 LTS-027 chr20 29652220 29966275 314056 * c(DEFB118, DEFB115, DEFB116, DEFB119, FRG1BP) 0.457 1 NA 0.880540139772755 66 0.532636237319018 3 3 0 -5.76477451347273 LTS-027 chr20 29966276 30064418 98143 * c(DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1) 0.39115036564032 6 0.0510607481339629 1.14154343446429 78 0.698863393511595 3 2 1 -6.74518174282776 LTS-027 chr20 30064419 30474726 410308 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, LINC00028, TTLL9, TPX2, FOXS1, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.393086022111302 10 0.0671287320501934 1.69707446591157 574 0.867027930172967 8 5 3 -6.73767778205454 LTS-027 chr20 30474727 36993452 6518726 * c(LOC100287792, TGIF2-C20orf24, MIR499B, MIR4755, LINC00489, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, CEP250, PXMP4, VSTM2L, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, MROH8, CCM2L, SOGA1, TLDC2, SUN5, ROMO1, C20orf173, CNBD2, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, EPB41L1, DLGAP4, RALY, MAPRE1, NCOA6, POFUT1, SAMHD1, AAR2, TRPC4AP, NA NA NA NA NA NA NA NA NA LTS-027 GGT7, GHRH, C20orf203, GSS, HCK, BPIFA4P, XKR7, BPIFB3, EIF6, LBP, ASIP, NNAT, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, C20orf24, CTNNBL1, NDRG3, MIR499A, MYH7B, TP53INP2, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NECAB3, NORAD, SNTA1, SPAG4, BPI, SRC, MIR644A, TGM2, DSN1, BPIFB2, PDRG1, GDF5, DYNLRB1, ITCH, SLA2, MAP1LC3A, ZNF341, KIAA1755, EIF2S2, CPNE1, NFS1, CBFA2T2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 BPIFB1, KIF3B, RBM39, TTI1, TM9SF4) 0.439493698614142 124 0.0890283770918916 1.2753853963948 9389 0.760278147769582 5 3 2 -6.79426800794261 LTS-027 NA NA NA NA LTS-027 chr20 36993453 36995346 1894 * LBP NA 0 NA 1.02 1 NA NA NA NA NA LTS-027 chr20 36995347 40706462 3711116 * c(PTPRT, SNHG11, SLC32A1, ADIG, ZHX3, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, PLCG1, RALGAPB, DHX35, LPIN3, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, CHD6, EMILIN3, MAFB) 0.438606091330672 43 0.0774456763132938 1.09390426363062 2206 0.554347786338692 4 2 2 -6.74349221611913 LTS-027 chr20 40706463 57599551 16893089 * c(ADA, ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, MIR4325, MIR3194, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, MIR4756, MIR4532, MIR5095, ATP9A, TRERNA1, SGK2, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, WFDC3, GCNT7, CBLN4, CTCFL, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, NA NA NA NA NA NA NA NA NA LTS-027 R3HDML, CSE1L, CSTF1, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, WFDC13, APCDD1L, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, WFDC11, WFDC9, L3MBTL1, SNORD12C, TP53TG5, MOCS3, GNAS, WFDC10B, LINC00494, LINC01270, HNF4A, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, FAM209B, SPINT4, SUMO1P1, MIR296, MC3R, MMP9, ZFAS1, MYBL2, NFATC2, SLC35C2, PCK1, IFT52, NELFCD, RTFDC1, OSER1, PIGT, PFDN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PI3, PLTP, CTSA, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, PMEPA1, CASS4, EPPIN, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, PREX1, PTPN1, NCOA5, KCNK15, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, BMP7, SLPI, SNAI1, STAU1, STK4, AURKA, SNORD12, MIR645, TFAP2C, TNNC2, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, ZNF217, GDAP1L1, LINC01260, TTPAL, NPEPL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PABPC1L, TUBB1, ZBP1, SLC2A10, NCOA3, PARD6B, RAE1, TOX2, BCAS1, STX16, MATN4, DPM1, WISP2, SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, SPATA2) 0.44426865718981 195 0.0445370779069005 1.21845436720735 12744 0.678773375996553 4 2 2 -7.0350110736187 LTS-027 NA NA NA NA LTS-027 chr20 57599552 57599557 6 * TUBB1 NA 0 NA 0.751 1 NA NA NA NA NA LTS-027 chr20 57599558 60504892 2905335 * c(CDH4, LOC100506384, SLMO2-ATP5E, MIR4533, SYCP2, PHACTR3, ZNF831, EDN3, C20orf197, MIR646HG, PRELID3B, ATP5E, PPP1R3D, CDH26, FAM217B, TUBB1) 0.429859684833817 11 0.141603287070219 1.02512131702912 1282 0.563855115564531 4 2 2 -6.75924547122778 LTS-027 chr20 60504893 60507954 3062 * CDH4 NA 0 NA 1.389 1 NA NA NA NA NA LTS-027 chr20 60507955 62836382 2328428 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, KCNQ2, NA NA NA NA NA NA NA NA NA LTS-027 LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.451678136555482 179 0.0592360621067946 1.29884096939539 5541 0.67433660399539 6 3 3 -6.88303046297426 LTS-027 NA NA NA NA LTS-027 chr20 62836383 62959313 122931 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.22613029125746 237 0.541682626679972 5 NA NA -5.76517724721858 LTS-027 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.424 1 NA 0.378825942387705 24 0.138095640036539 0 0 0 -5.86622487577084 LTS-027 chr21 9907272 11098664 1191393 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.341735526307812 29 0.0885326190200079 0.509989437908345 161 0.504976836379158 1 1 0 -6.83238468384424 LTS-027 chr21 11098665 11098768 104 * c(BAGE, BAGE3) NA 0 NA 1.31307390870624 3 0.132790561913614 5 NA NA -5.76441075108193 LTS-027 chr21 14745307 15600054 854748 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, RBM11, NA) 0.5 1 NA 0.383961645509926 167 0.361165476288273 0 0 0 -5.93994322137334 LTS-027 chr21 15600055 16340539 740485 * c(SAMSN1-AS1, ABCC13, LOC388813, RBM11, SAMSN1, HSPA13, NRIP1) 0.335996028072693 10 0.093733902321649 0.396506845312895 412 0.219140459838249 1 1 0 -7.30913959702497 LTS-027 chr21 16340540 16340621 82 * NRIP1 NA 0 NA 0.636 1 NA NA NA NA NA LTS-027 chr21 16340622 19165090 2824469 * c(LINC01549, BTG3, CXADR, C21orf91-OT1, USP25, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, C21orf91, NRIP1) 0.304432052559662 15 0.0911415435044906 0.524667766168944 511 0.371719656612251 1 1 0 -6.74738790500711 LTS-027 chr21 19165091 19670118 505028 * c(CHODL, CHODL-AS1, C21orf91, TMPRSS15) 0.25 1 NA 0.570388263572385 157 0.374410500778564 1 1 0 -5.79421812785204 LTS-027 chr21 19670119 26946347 7276229 * c(RNU6-67P, MIR155HG, D21S2088E, LOC339622, LINC00317, LINC00320, MIR155, NCAM2, LINC00158, LINC00308, TMPRSS15) 0.257 1 NA 0.565525457793674 303 0.269238398598477 1 1 0 -6.40785605257937 LTS-027 chr21 26946348 31312350 4366003 * c(GRIK1-AS2, MIR4759, RWDD2B, USP16, CCT8, ADAMTS5, MIR155HG, CYYR1, LINC00161, LINC00189, LINC00314, GABPA, LTN1, LINC00515, GRIK1, N6AMT1, APP, MIR155, ATP5J, LINC00113, MRPL39, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, ADAMTS1) 0.183940827151961 33 0.0698142557292585 0.86930457812908 1858 0.530964117400683 3 3 0 -6.76284765609978 LTS-027 chr21 31312351 31538170 225820 * character(0) NA 0 NA 0.499 1 NA NA NA NA NA LTS-027 chr21 31538171 32491064 952894 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.143001793312439 14 0.0638503143090356 0.524215777031474 567 0.274061893104264 2 2 0 -8.09959634542321 LTS-027 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.532 1 NA NA NA NA NA LTS-027 chr21 32491171 38385935 5894765 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, OLIG2, LINC00310, OLIG1, TCP10L, RCAN1, MORC3, CLDN14, GART, DONSON, HUNK, HLCS, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, RIPPLY3, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, SETD4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, LINC01548, TMEM50B, NA NA NA NA NA NA NA NA NA LTS-027 MIR802, RUNX1-IT1, CHAF1B, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, PAXBP1, URB1, CRYZL1, DOPEY2, KCNE2) 0.173207909856531 100 0.0652576641266965 0.99366641837531 5226 1.08253980890001 3 3 0 -6.76177071780993 LTS-027 NA NA NA NA LTS-027 chr21 38385936 38884356 498421 * c(DSCR3, DYRK1A, DSCR9, PIGP, RIPPLY3, TTC3) 0.262 1 NA 0.579698903274461 674 0.625567437823731 1 1 0 -5.77808312680481 LTS-027 chr21 38884357 38884438 82 * DYRK1A NA 0 NA 0.913 1 NA NA NA NA NA LTS-027 chr21 38884439 41711384 2826946 * c(MIR4760, BRWD1-AS1, DSCR4, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, DYRK1A, ERG, ETS2, NA, DSCR10, HMGN1, KCNJ6, KCNJ15, LINC00114, PCP4, BRWD1, SH3BGR, WRB, DSCR8, PSMG1) 0.177874874160913 41 0.0593150024209316 0.912431111005379 1685 0.55762381411654 3 3 0 -6.73979891739518 LTS-027 chr21 41711385 41719616 8232 * DSCAM NA 0 NA 1.727 1 NA NA NA NA NA LTS-027 chr21 41719617 48022230 6302614 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, DSCAM-IT1, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, NA NA NA NA NA NA NA NA NA LTS-027 KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.177217550644536 279 0.0779288628235264 1.12471046215726 8119 0.75177991681699 4 4 0 -6.86285199655468 LTS-027 NA NA NA NA LTS-027 chr21 48022231 48084993 62763 * c(PRMT2, S100B) NA 0 NA 0.984101988778238 101 0.753954809555245 3 NA NA -5.76492043172574 LTS-027 chr22 16157787 16157883 97 * character(0) 0.394 1 NA 5.609 1 NA NA NA NA NA LTS-027 chr22 16157884 17072624 914741 * c(CCT8L2, POTEH, OR11H1) 0.33065462529378 3 0.0731733102526689 0.396005351738712 105 0.363945499431957 1 1 0 -7.04654037270411 LTS-027 chr22 17072625 17072708 84 * CCT8L2 NA 0 NA 0.552 1 NA NA NA NA NA LTS-027 chr22 17072709 20296895 3224187 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, PRODH, NA NA NA NA NA NA NA NA NA LTS-027 MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR2) 0.206616616312217 113 0.0699479499911513 0.838232066551564 4425 0.456666154681471 3 3 0 -6.92541342736125 LTS-027 NA NA NA NA LTS-027 chr22 20296896 20296909 14 * character(0) NA 0 NA 0.543 1 NA NA NA NA NA LTS-027 chr22 20296910 20721039 424130 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) NA 0 NA 0.450290991096579 90 0.288532120429166 1 NA NA -5.80717289323089 LTS-027 chr22 20721040 20721803 764 * character(0) NA 0 NA 0.882 1 NA NA NA NA NA LTS-027 chr22 20721804 22300536 1578733 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29, PPM1F) 0.207779997304807 70 0.0723998329957009 0.849250888826844 2323 0.489921384676343 2 2 0 -6.88558289538787 LTS-027 chr22 22300537 22309908 9372 * PPM1F NA 0 NA 0.297 1 NA NA NA NA NA LTS-027 chr22 22309909 23248876 938968 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, LL22NC03-63E9.3, MIR650, VPREB1, TOP3B, GGTLC2, BMS1P20) 0.228228252774276 70 0.0930577071123186 0.663712612751314 952 0.417533805223593 2 2 0 -6.7489493569357 LTS-027 chr22 23248877 23252704 3828 * character(0) NA 0 NA 0.953 1 NA NA NA NA NA LTS-027 chr22 23252705 24340955 1088251 * c(DDTL, ZDHHC8P1, C22orf15, DDT, GSTTP1, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3, RAB36) 0.206513463164542 20 0.0580164223574489 0.780511648635344 1229 0.432024729865634 2 2 0 -6.80244092200713 LTS-027 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.576 1 NA NA NA NA NA LTS-027 chr22 24342341 24400237 57897 * c(GSTTP1, GSTT1, LOC391322, GSTTP2) NA 0 NA 1.91346518006928 61 1.03767884073192 8 NA NA -5.76441623917586 LTS-027 chr22 24400238 24431846 31609 * c(CABIN1, GSTTP2) NA 0 NA 0.672 1 NA NA NA NA NA LTS-027 chr22 24431847 26388473 1956627 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.211376190565988 45 0.0908931940646423 0.798870403484033 1926 0.469865057901071 2 2 0 -6.82191304481609 LTS-027 chr22 26388474 26399199 10726 * MYO18B NA 0 NA 0.433 1 NA NA NA NA NA LTS-027 chr22 26399200 26829349 430150 * c(SEZ6L, ASPHD2, MYO18B) 0.206784773057048 7 0.0735391052434009 0.536684566576551 225 0.275080079105403 2 2 0 -6.99433271040577 LTS-027 chr22 26829350 30775263 3945914 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, HORMAD2, AP1B1, CABP7, RNF215, EWSR1, TTC28, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, UQCR10, LIF, SRRD, MN1, MIAT, NEFH, NF2, OSM, CCDC157, ZMAT5, ASPHD2, RFPL1, GATSL3, XBP1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, NIPSNAP1, KIAA1656, THOC5, MTMR3, HPS4) 0.20183822556164 50 0.0633458566207799 0.840760073401744 3732 0.469464405878289 3 3 0 -6.91530816613195 LTS-027 chr22 30775264 30885696 110433 * c(RNF215, SEC14L2, SEC14L3, SEC14L4, SDC4P, MTFP1) 0.120571773929866 9 0.0661021936095921 1.32977655834102 355 0.82300251437329 5 5 0 -6.73321247414758 LTS-027 chr22 30885697 32506031 1620335 * c(MIR3200, MIR3928, PIK3IP1, SELENOM, DUSP18, MORC2-AS1, MORC2, PES1, PATZ1, PISD, OSBP2, PRR14L, C22orf24, INPP5J, SEC14L4, SLC35E4, LIMK2, DRG1, PLA2G3, TUG1, EIF4ENIF1, SLC5A1, SMTN, TCN2, SEC14L6, YWHAH, RNF185, GAL3ST1, DEPDC5, SFI1) 0.218150816134305 36 0.0753610305173365 0.837387694537928 2816 0.634207932227064 2 2 0 -6.80505972703043 LTS-027 chr22 32506032 32767065 261034 * c(RFPL3S, RFPL3, RFPL2, C22orf42, AP1B1P1, SLC5A1, SLC5A4) 0.223853069074659 8 0.0576440741595724 0.572048885231523 305 0.321078126017489 2 2 0 -6.8005397317022 LTS-027 chr22 32767066 32783541 16476 * LOC339666 NA 0 NA 0.715 1 NA NA NA NA NA LTS-027 chr22 32783542 36585314 3801773 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, MIR4764, RBFOX2, RASD2, BPIFC, FBXO7, HMOX1, MB, MCM5, RTCB, TIMP3, APOL6, APOL5, APOL4, APOL3, SYN3, ISX, LARGE1) 0.206603322665604 30 0.085760425457857 0.786899689291485 1621 0.441499201800025 2 2 0 -6.88864402186766 LTS-027 chr22 36585315 36585356 42 * APOL4 NA 0 NA 0.484 1 NA NA NA NA NA LTS-027 chr22 36585357 36622945 37589 * c(APOL2, APOL4) 0.230749734137004 18 0.0468803232271531 0.393363427460955 93 0.219056233054053 2 2 0 -6.91925551166816 LTS-027 chr22 36622946 36622955 10 * APOL2 NA 0 NA 0.589 1 NA NA NA NA NA LTS-027 chr22 36622956 42487006 5864051 * c(LOC100130899, NDUFA6-AS1, MIR1281, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, APOBEC3A_B, DNAL4, CACNG2, TAB1, SLC25A17, DDX17, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, APOBEC3A, APOBEC3F, EP300, TNRC6B, ZC3H7B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, NA NA NA NA NA NA NA NA NA LTS-027 SH3BP1, MAFF, APOL2, XRCC6, CBY1, SUN2, TXN2, TMEM184B, GGA1, SNORD43, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, CARD10, H1F0, TEX33, LINC00634, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MIR33A, MFNG, MGAT3, MPST, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, SNU13, ACO2, EIF3L, PDGFB, PMM1, POLR2F, MIEF1, SEPT3, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SOX10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SREBF2, SSTR3, ST13, TEF, MIR658, MIR659, TST, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, L3MBTL2, PLA2G6, C22orf23, GALR3, PHF5A, MICALL1, APOL1, EIF3D, CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.199999924817574 227 0.064982564243095 0.876400652177287 10636 0.505227009722241 3 3 0 -6.85361777305414 LTS-027 NA NA NA NA LTS-027 chr22 42487007 42522457 35451 * NDUFA6-AS1 NA 0 NA 0.145 1 NA NA NA NA NA LTS-027 chr22 42522458 42526938 4481 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 0.11997327865797 59 0.0820668890847242 0 NA NA -6.10379339793978 LTS-027 chr22 42526939 42536170 9232 * NDUFA6-AS1 NA 0 NA 0.496 1 NA NA NA NA NA LTS-027 chr22 42536171 51160877 8624707 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, NA NA NA NA NA NA NA NA NA LTS-027 MCAT, LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.203009872105297 291 0.0603448475682597 0.870832048213654 8692 0.537591463379837 3 3 0 -6.9090809880613 LTS-027 NA NA NA NA LTS-027 chr22 51160878 51183804 22927 * c(ACR, SHANK3) NA 0 NA 0.803375809690687 63 0.399968311596829 3 NA NA -5.76554977337815 LTS-027 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.324 1 NA NA NA NA NA LTS-027 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.466425197590359 71 0.248009282944327 1 NA NA -5.76542435603806 LTS-027 chrX 2699993 2700027 35 * XG 0.351 1 NA 1.497 1 NA NA NA NA NA LTS-027 chrX 2700028 10535705 7835678 * c(LINC01546, CLDN34, MIR4770, MIR4767, CLCN4, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.410489211388124 61 0.086163318682249 0.715850625122685 2414 0.451942044041826 2 1 1 -6.76511057529157 LTS-027 chrX 11130055 11445780 315726 * c(AMELX, HCCS, ARHGAP6) NA 0 NA 1.21458402099483 239 0.580957667657463 5 NA NA -5.76675925042282 LTS-027 chrX 11445781 11682280 236500 * ARHGAP6 NA 0 NA 0.718 1 NA NA NA NA NA LTS-027 chrX 11682281 15848463 4166183 * c(GS1-600G8.3, LINC01203, PIR-FIGF, MSL3, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, CA5BP1, TLR8-AS1, ARHGAP6, TLR7, TLR8, PIGA, GEMIN8, PRPS2, TMEM27, ACE2, TRAPPC2, BMX, TMSB4X, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, FRMPD4) 0.345173872462027 28 0.10760008261046 0.659416904192942 2536 0.37715927658601 2 1 1 -7.14736530717176 LTS-027 chrX 15848464 15851194 2731 * AP1S2 NA 0 NA 0.279154244265824 59 0.0863683716217834 0 NA NA -5.76680039081223 LTS-027 chrX 15851195 15851509 315 * AP1S2 NA 0 NA 1.104 1 NA NA NA NA NA LTS-027 chrX 15851510 24330037 8478528 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, BEND2, PTCHD1, ZNF645, DDX53, SUPT20HL2, EIF1AX, EIF2S3, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, GRPR, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, MAGEB17, SMS, CDKL5, LOC729609, ZFX, APOO, S100G, KLHL15, AP1S2, REPS2, NA NA NA NA NA NA NA NA NA LTS-027 SYAP1) 0.405128979312307 37 0.117881245276711 0.695405422193177 4916 0.4200581325829 2 1 1 -6.76096861484808 LTS-027 NA NA NA NA LTS-027 chrX 24330038 24382169 52132 * c(SUPT20HL1, SUPT20HL2) 0.433465271077233 2 0.00353553390593274 0.347318687927622 70 0.194029856190143 0 0 0 -7.75533884783333 LTS-027 chrX 24382170 25015015 632846 * c(SUPT20HL1, PDK3, POLA1, SCARNA23, PCYT1B) 0.430637234314668 5 0.0650945466225858 0.663426642510203 443 0.341174169626013 2 1 1 -6.74531227842779 LTS-027 chrX 25015016 25034152 19137 * c(ARX, POLA1) 0 1 NA 1.23949623352487 78 0.896491674256556 5 5 0 -5.76443830197042 LTS-027 chrX 26156999 37285255 11128257 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, FAM47A, MAGEB6, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, CXorf21, TMEM47) 0.430598381195361 22 0.105524170924725 0.547638699634941 2000 0.313724653029865 1 1 0 -7.8545607971562 LTS-027 chrX 37285256 37300002 14747 * PRRG1 NA 0 NA 1.562 1 NA NA NA NA NA LTS-027 chrX 37300003 48436037 11136035 * c(SNORA11C, LOC100132831, UXT-AS1, MIR4769, ATP6AP2, SSX3, EBP, FUNDC1, CYBB, CXorf38, DDX3X, ELK1, FTSJ1, HYPM, GPR82, SSX6, SSX9, GPR34, LINC01281, ZNF81, LANCL3, MPC1L, ARAF, SPACA5, LOC392452, CXXC1P1, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, TBC1D25, OTC, CDK16, CFP, NDUFB11, BCOR, KRBOX4, PRRG1, CHST7, ZNF630, MID1IP1, RBM3, NYX, RP2, RPGR, DUSP21, ZNF674, PORCN, SSX1, SSX5, SYN1, DYNLT3, NA NA NA NA NA NA NA NA NA LTS-027 TIMP1, TSPAN7, LINC01545, UBA1, KDM6A, XK, ZNF182, ZNF41, ZNF157, CXorf36, EFHC2, PPP1R2P9, USP11, USP9X, RBM10, SRPX, UXT, SLC9A7, INE1, CASK, RGN, SLC38A5, MED14, SYTL5, JADE3) 0.419158623250417 53 0.084426258821054 0.715423635938236 5864 0.403285383445447 2 1 1 -6.7504732539939 LTS-027 NA NA NA NA LTS-027 chrX 48436038 48436122 85 * RBM3 NA 0 NA 1.371 1 NA NA NA NA NA LTS-027 chrX 48436123 49137702 701580 * c(HDAC6, PQBP1, TIMM17B, PIM2, WDR45, PRAF2, GATA1, GPKOW, PCSK1N, CCDC22, ERAS, KCND1, GLOD5, PRICKLE3, FOXP3, PLP2, OTUD5, GRIPAP1, RBM3, WDR13, SUV39H1, SYP, TFE3, SLC35A2, WAS, CACNA1F, MAGIX, PPP1R3F, CCDC120) 0.319871875414761 26 0.0970578970749695 1.08398204111406 2162 0.576107793504488 4 3 1 -6.73326484488374 LTS-027 chrX 49137703 53115549 3977847 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, TSPYL2, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.393960761072826 11 0.0876610206731278 0.625614877159108 1455 0.348003993945664 2 1 1 -7.08854564005871 LTS-027 chrX 53115550 55172708 2057159 * c(HUWE1, MAGED2, RIBC1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, PFKFB1, GNL3L, FAM120C, TSPYL2, WNK3, SNORA11, TRO, KDM5C, SMC1A, TSR2, FAM104B) 0.34619339138778 14 0.136462549706971 0.780278736822983 2818 0.429767880670325 3 2 1 -6.92041832205093 LTS-027 chrX 55172709 57937169 2764461 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) NA 0 NA 0.743745947845078 832 0.422366206650743 2 NA NA -5.79200239711135 LTS-027 chrX 61999880 63409142 1409263 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.718670804422679 329 0.617568503167847 2 2 0 -5.76532406325927 LTS-027 chrX 63409143 71934101 8524959 * c(MIR676, VSIG4, AMER1, OTUD6A, ASB12, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, CITED1, MSN, NONO, OPHN1, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, MTMR8, HDAC8, ZC4H2, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, TAF1, LAS1L, NA NA NA NA NA NA NA NA NA LTS-027 FRMD8P1, OGT, SLC7A3, ZMYM3, ACRC, STARD8, HEPH, MED12) 0.41778473678094 27 0.0674815792106522 0.689311997385028 5358 0.383245238126631 2 1 1 -6.7638519218402 LTS-027 NA NA NA NA LTS-027 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.192 1 NA NA NA NA NA LTS-027 chrX 72066651 72299208 232558 * c(PABPC1L2A, PABPC1L2B, FAM226B) 0.364431370954422 4 0.101519702521235 0.339629273408776 94 0.302761954093456 0 0 0 -6.97545919800841 LTS-027 chrX 72299209 77913669 5614461 * c(MIR374B, FTX, MIR374C, CDX4, CYSLTR1, COX7B, MAP2K4P1, UPRT, MAGEE2, ZDHHC15, ZCCHC5, ABCB7, TTC3P1, PABPC1L2A, KIAA2022, ZCCHC13, PGAM4, MIR374A, NAP1L2, MIR384, RLIM, PBDC1, TAF9B, PGK1, CHIC1, ATP7A, ATRX, JPX, MAGEE1, NAP1L6, SLC16A2, MIR545, MIR421, XIST, MAGT1, FGF16, TSIX) 0.425543262655642 4 0.0459746306854842 0.648729237012375 2654 0.386176509045863 2 1 1 -6.88386136809091 LTS-027 chrX 77913670 79826405 1912736 * c(MIR4328, FAM46D, ZCCHC5, P2RY10, LPAR4, TBX22, GPR174, ITM2A) NA 0 NA 0.434838830606205 295 0.238523807767487 1 NA NA -6.20624338574569 LTS-027 chrX 79826406 79830293 3888 * character(0) NA 0 NA 0.988 1 NA NA NA NA NA LTS-027 chrX 79830294 90693597 10863304 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, PABPC5, CYLC1, BRWD3, RPS6KA6, SATL1, CPXCR1, POU3F4, KLHL4, SH3BGRL, ZNF711, HMGN5, POF1B, TGIF2LX) 0.368346858128416 19 0.147011058978528 0.592006990305084 1776 0.360937506343686 1 1 0 -7.85099503140541 LTS-027 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.146 1 NA NA NA NA NA LTS-027 chrX 91066177 91138405 72229 * PCDH11X 0.398038010704405 3 0.0908918771581561 0.228684873683782 131 0.112660604744609 0 0 0 -7.0991025393199 LTS-027 chrX 91138406 91873863 735458 * PCDH11X NA 0 NA 0.65976205111116 56 0.521100847419977 2 NA NA -5.7713143704894 LTS-027 chrX 91873864 91878195 4332 * PCDH11X 0.330059223378579 2 0.13717871555019 0.302311416601366 111 0.809228772590425 4 3 1 -6.7427131221722 LTS-027 chrX 92925915 101609367 8683453 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, CSTF2, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, FAM133A, RPA4, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, ZMAT1, SYTL4, ARMCX2) 0.40935658484473 38 0.0844080425000564 0.651435765711958 2643 0.500771883299844 2 1 1 -6.88708987419864 LTS-027 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.029 1 NA NA NA NA NA LTS-027 chrX 101615285 101625090 9806 * character(0) NA 0 NA 0.203596821649086 41 0.280490776336328 0 NA NA -5.77757020148712 LTS-027 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.775 1 NA NA NA NA NA LTS-027 chrX 101768565 135293526 33524962 * c(ZBTB33, MIR450B, LINC00633, TEX13C, PRR32, LINC00630, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, LINC00629, ARMCX5-GPRASP2, MIR3978, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ACTRT1, GPR119, RBMXL3, DOCK11, RAB40A, AMOT, ARHGAP36, AKAP14, RHOXF1, NKAPP1, NA NA NA NA NA NA NA NA NA LTS-027 H2BFWT, FAM122B, FAM122C, DCX, ZCCHC12, TSC22D3, AGTR2, ELF4, CT83, SLC25A43, NRK, INTS6L, ZNF449, TMEM31, ACSL4, GPC4, FHL1, SEPT6, ATP1B4, KCNE5, CT47A11, FAM127B, IL1RAPL2, SNORA69, BEX3, GPC3, GLUD2, RAB40AL, H2BFM, LOC286437, FIRRE, TMSB15B, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, HPRT1, XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, OR13H1, CCDC160, IGSF1, IL13RA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 IL13RA2, LAMP2, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR106A, MIR19B2, MIR92A2, GLRA4, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, PAK3, ZDHHC9, TCEAL9, RAB9B, LUZP4, TFDP3, RBMX2, STK26, PLP1, PLS3, CT45A6, CT45A1, SASH3, WDR44, NUP62CL, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, TEX13A, MOSPD1, BEX4, PRPS1, TCEAL7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, KIAA1210, RGAG1, LRCH2, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, ARMCX5, UPF3B, CT47A7, SMARCA1, MIR542, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZNF75D, MIR766, RNF113A, NKAP, RNF128, MORC4, LONRF3, ALG13, TCEAL4, ESX1, BHLHB9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-027 CAPN6, USP26, TMEM164, PHF6, CUL4B, BEX2, IRS4, MIR503HG, TCEAL3, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, TCEAL8, AIFM1, CHRDL1, RIPPLY1, TCEAL1, MMGT1, RAB33A, MORF4L2, GPRASP1, AMMECR1) 0.399708188307891 99 0.0943682058568668 0.636549525113997 14872 0.366506773106416 2 1 1 -8.02356054749344 LTS-027 NA NA NA NA LTS-027 chrX 135293527 135301480 7954 * MAP7D3 NA 0 NA 0.374 1 NA NA NA NA NA LTS-027 chrX 135301481 148628393 13326913 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, FGF13-AS1, LINC00893, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, ADGRG4, FMR1NB, LINC00889, NA, NA, F9, FGF13, FMR1, AFF2, LDOC1, SNORD61, RBMX, HTATSF1, ATP11C, LINC00632, IDS, CXorf66, LOC389895, UBE2NL, MCF2, SPANXN4, SPANXN1, SPANXN2, MAGEC2, VGLL1, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, NA NA NA NA NA NA NA NA NA LTS-027 MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, BRS3, ZIC3, MAP7D3, GPR101, SLITRK2, TMEM257, CXorf40A, ARHGEF6, CD40LG, MAGEC1) 0.420107576735217 47 0.0719998393974979 0.577784022380123 3282 0.363929352512401 2 1 1 -8.48459232120133 LTS-027 NA NA NA NA LTS-027 chrX 148628394 148664791 36398 * CXorf40A NA 0 NA 0.160012280220638 46 0.0950523196890053 0 NA NA -6.66890611347367 LTS-027 chrX 148664792 149014630 349839 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.36 1 NA 0.562442651290752 146 0.295591828536886 1 1 0 -5.79013094050366 LTS-027 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.039 1 NA NA NA NA NA LTS-027 chrX 149097210 149100977 3768 * CXorf40B NA 0 NA 0.196014309469947 39 0.119839844768183 0 NA NA -5.79723213518253 LTS-027 chrX 149100978 149101817 840 * CXorf40B NA 0 NA 0.5 1 NA NA NA NA NA LTS-027 chrX 149101818 151825940 2724123 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.409303595325769 12 0.136053771678255 0.6609419161904 1503 0.377353380002274 2 1 1 -6.79070418322842 LTS-027 chrX 151825941 151869399 43459 * MAGEA6 NA 0 NA 0.068 1 NA NA NA NA NA LTS-027 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) NA 0 NA 0.324176933689482 117 0.236307896081919 0 NA NA -5.76587166916058 LTS-027 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 0.927 1 NA NA NA NA NA LTS-027 chrX 151995517 154011688 2016172 * c(NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, SNORA36A, SNORA56, TAZ, ZNF185, NAA10, NA NA NA NA NA NA NA NA NA LTS-027 UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.428468750096955 74 0.0971338319187554 0.780635223632783 4558 0.444337990394026 2 1 1 -6.79734933688975 LTS-027 NA NA NA NA LTS-027 chrX 154011689 154507173 495485 * c(SMIM9, CMC4, RAB39B, CLIC2, F8, MPP1, MTCP1, FUNDC2, VBP1, BRCC3) 0.440534075341252 10 0.0422743683834806 0.61965417360999 736 0.307435767545751 2 1 1 -6.83282118776684 LTS-027 chrX 154507174 154528381 21208 * CLIC2 NA 0 NA 0.51725873578491 28 0.256447288229397 1 NA NA -5.76448713010363 LTS-027 chrX 154528382 154580233 51852 * CLIC2 NA 0 NA 0.232390798213689 40 0.263502537330264 0 NA NA -5.80126884046244 LTS-027 chrX 154580234 154774986 194753 * TMLHE NA 0 NA 0.905816131211424 39 1.75187171314718 3 NA NA -5.76441104056383 LTS-027 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.158531099271118 25 0.0951301389325871 0 NA NA -11.9239543248561 LTS-027 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.875904588115112 20 0.691219715240272 3 NA NA -5.7725146987249 LTS-027 chr1 65893 878331 812439 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.018 1 NA 0.925498721390545 89 0.353754710280959 3 3 0 -5.82297448578244 LTS-028 chr1 878332 1203410 325079 * c(UBE2J2, B3GALT6, SAMD11, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, SDF4, C1orf159, MIR429, HES4, TNFRSF4, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.0244256716768664 22 0.0146343603264544 0.824580428166444 1152 0.246578548555821 3 3 0 -6.73396840807972 LTS-028 chr1 1203411 1215868 12458 * c(UBE2J2, SCNN1D) NA 0 NA 1.354 1 NA NA NA NA NA LTS-028 chr1 1215869 1404005 188137 * c(ACAP3, PUSL1, LOC148413, DVL1, ATAD3C, ANKRD65, MXRA8, CPSF3L, AURKAIP1, MRPL20, SCNN1D, TMEM88B, VWA1, CPTP, CCNL2, TAS1R3) 0.0252143752823842 8 0.0542316460064733 1.11827564868607 1038 0.286669639083764 4 4 0 -6.74503812763222 LTS-028 chr1 1404006 1564712 160707 * c(MIB2, ATAD3C, SSU72, TMEM240, ATAD3A, FNDC10, ATAD3B) 0.0503029292612141 4 0.0204857674170793 0.929260984599386 476 0.30470024657185 2 2 0 -7.30751993825591 LTS-028 chr1 1564713 1582202 17490 * c(MIB2, MMP23B, CDK11B) 0.468 1 NA 1.0003738236691 84 0.351550699664902 4 4 0 -5.76488326548098 LTS-028 chr1 1582203 1599940 17738 * c(SLC35E2B, CDK11B) 0.36717166756515 9 0.0757899143099602 0.927107522778906 157 0.339889095524183 8 5 3 -6.80418476612217 LTS-028 chr1 1599941 1607047 7107 * c(SLC35E2B, CDK11B) NA 0 NA 0.780522402923679 19 0.188047570813581 3 NA NA -5.76467819027965 LTS-028 chr1 1607048 1607470 423 * c(SLC35E2B, CDK11B) NA 0 NA 0.032 1 NA NA NA NA NA LTS-028 chr1 1607471 1608229 759 * c(SLC35E2B, CDK11B) 0.032 1 NA 0.414710701384724 9 0.395653292388396 2 2 0 -5.76466757061867 LTS-028 chr1 1608230 1636501 28272 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.0402464888315269 4 0.0129871731591854 0.528824202254481 67 0.338529319863222 2 2 0 -6.82915654101552 LTS-028 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.032 1 NA NA NA NA NA LTS-028 chr1 1637054 1645617 8564 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.276946107230509 39 0.22767097503743 1 NA NA -5.76498182853406 LTS-028 chr1 1645618 1645622 5 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.587 1 NA NA NA NA NA LTS-028 chr1 1645623 1650797 5175 * c(CDK11A, SLC35E2B, CDK11B) 0.350819998037947 5 0.19587317325249 0.72715977855876 21 0.34302782755367 3 2 1 -6.73486641995323 LTS-028 chr1 1650798 1650801 4 * c(CDK11A, SLC35E2B, CDK11B) 0.401 1 NA 1.183 1 NA NA NA NA NA LTS-028 chr1 1650802 1661298 10497 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.439165223132004 9 0.0420475920832573 0.579440571390155 96 0.309056458817547 2 1 1 -6.73668502252436 LTS-028 chr1 1661299 1669905 8607 * c(SLC35E2B, SLC35E2) NA 0 NA 0.553652203031711 34 0.130685782006071 2 NA NA -5.76443314339112 LTS-028 chr1 1669906 1670328 423 * c(SLC35E2B, SLC35E2) NA 0 NA 0.92 1 NA NA NA NA NA LTS-028 chr1 1670329 1846582 176254 * c(CALML6, GNB1, NADK, SLC35E2B, SLC35E2) 0.038 1 NA 0.873331345725798 185 0.283624142227093 3 3 0 -5.76999335371947 LTS-028 chr1 1846583 7732263 5885681 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, MIR551A, TP73, NA NA NA NA NA NA NA NA NA LTS-028 LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21) 0.0217723886443513 99 0.0130327829830011 0.862099700275099 5091 0.287218550525382 3 3 0 -6.86379609879949 LTS-028 NA NA NA NA LTS-028 chr1 7732264 7737620 5357 * CAMTA1 NA 0 NA 0.719 1 NA NA NA NA NA LTS-028 chr1 7737621 9416151 1678531 * c(ENO1-AS1, UTS2, PARK7, SLC2A7, ENO1, CAMTA1, TNFRSF9, MIR34A, RERE, SLC45A1, ERRFI1, SLC2A5, CA6, GPR157, SPSB1, PER3, VAMP3, H6PD) 0.0286856193983116 49 0.0127801597405196 0.818836027630655 1529 0.276920973674413 3 3 0 -6.81567638227574 LTS-028 chr1 9416152 9416346 195 * SPSB1 0.027 1 NA 0.748117134577997 5 0.40445580722744 3 3 0 -5.76441584155143 LTS-028 chr1 9416347 12907351 3491005 * c(NPPA-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, RBP7, CLCN6, AADACL3, CORT, C1orf127, DFFA, TMEM201, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, HNRNPCL1, DRAXIN, CENPS, PRAMEF12, PRAMEF11, MTHFR, NPPA, NPPB, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, HNRNPCL3, PRAMEF1, SRM, SNORA59B, TNFRSF1B, SPSB1, NA NA NA NA NA NA NA NA NA LTS-028 SLC25A33, LZIC, KIAA2013, DHRS3, C1orf158, FBXO44, TNFRSF8, MFN2) 0.020800529525517 79 0.0146496131418581 0.80545593803914 5333 0.201661469524849 3 3 0 -6.77261662978017 LTS-028 NA NA NA NA LTS-028 chr1 12907352 12907885 534 * c(HNRNPCL1, HNRNPCL3) 0.452 1 NA 0.687721161775685 9 0.143537548320214 3 3 0 -5.76487859610077 LTS-028 chr1 12907886 13183966 276081 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.333753885424593 9 0.11151008922963 0.748748017815047 53 0.255051848794112 3 2 1 -6.75562403801952 LTS-028 chr1 13183967 13447844 263878 * c(PRAMEF9, PRAMEF13, NA, HNRNPCL2) 0.022 1 NA 0.63261193855905 7 0.65462177374929 2 2 0 -5.77014034994968 LTS-028 chr1 13447845 16360316 2912472 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, PRAMEF9, TMEM82, PRAMEF17, PRAMEF13, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, NA, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.02672682623307 78 0.0148345296542651 0.814100166144778 2417 0.268156532494231 3 3 0 -6.75520428116577 LTS-028 chr1 16360317 16360424 108 * c(CLCNKA, CLCNKB) 0.346 1 NA 0.495590802499868 3 0.190336544047642 2 2 0 -5.76443544485927 LTS-028 chr1 16360425 16385184 24760 * c(CLCNKA, CLCNKB, FAM131C) 0.390403472687229 9 0.147851370564421 0.801837540118057 160 0.324448387652027 5 3 2 -6.77252995306208 LTS-028 chr1 16385185 16460963 75779 * c(EPHA2, FAM131C) 0.022 1 NA 0.871731287384605 75 0.221300299825153 3 3 0 -5.76813549192499 LTS-028 chr1 16460964 16731510 270547 * c(ARHGEF19, EPHA2, SZRD1, SPATA21, FBXO42, RSG1) 0.0173009415059035 11 0.0156652481627327 0.833140347365005 507 0.163082725429377 3 3 0 -6.8399577192912 LTS-028 chr1 16731511 16862454 130944 * c(CROCCP3, SPATA21, NECAP2) 0.497 1 NA 0.816557284176887 132 0.176275666254683 3 3 0 -5.76442043670975 LTS-028 chr1 16862455 16978031 115577 * c(MST1P2, NBPF1, CROCCP2) 0.303059059460185 21 0.109520143830995 0.705860477787577 121 0.226188186235016 3 2 1 -6.83407482113891 LTS-028 chr1 16978032 17009812 31781 * character(0) 0.052 1 NA 0.613126053678231 20 0.215400117284824 2 2 0 -5.76798625771639 LTS-028 chr1 17009813 17012093 2281 * character(0) 0.0315443079355721 5 0.0632471343224339 0.900891519178442 54 0.265646733993891 2 2 0 -6.73926790811246 LTS-028 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-028 chr1 17017583 17081640 64058 * c(MST1L, ESPNP, CROCC) 0.051505313753112 6 0.0446351879126771 0.535072095005844 69 0.198639784165628 2 2 0 -6.81558112777792 LTS-028 chr1 17081641 17081708 68 * c(MST1L, CROCC) NA 0 NA 0.711 1 NA NA NA NA NA LTS-028 chr1 17081709 17081796 88 * c(MST1L, CROCC) 0.036 1 NA 1.497 1 NA NA NA NA NA LTS-028 chr1 17081797 17081855 59 * c(MST1L, CROCC) 0.204 1 NA 0.824060088958574 3 0.381676564646036 3 3 0 -5.76441014678826 LTS-028 chr1 17081856 17083685 1830 * c(MST1L, CROCC) 0.183295034479142 9 0.105841600726956 0.879857907413337 55 0.304163252506091 6 5 1 -6.74107221729555 LTS-028 chr1 17083686 17084968 1283 * c(MST1L, CROCC) 0.367 1 NA 0.869920445217214 25 0.273164614594692 3 3 0 -5.76444885259933 LTS-028 chr1 17084969 17197619 112651 * c(MST1L, CROCC) 0.276825696743674 15 0.121736522672454 0.941847757624854 66 0.500900575444056 4 3 1 -6.7506585395109 LTS-028 chr1 17197620 17248500 50881 * CROCC 0.016 1 NA 0.2550770432837 22 0.238448665825092 1 1 0 -5.77781877313835 LTS-028 chr1 17248501 17720545 472045 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, SDHB, CROCC) 0.0230869122791918 43 0.0122011563818461 0.867785949884623 961 0.589342874473568 3 3 0 -6.73857832623998 LTS-028 chr1 17720546 17765120 44575 * c(PADI6, RCC2) NA 0 NA 0.833117812121303 133 0.191677397641093 3 NA NA -5.76464753590953 LTS-028 chr1 17765121 17906966 141846 * c(ARHGEF10L, RCC2) NA 0 NA 1.023 1 NA NA NA NA NA LTS-028 chr1 17906967 17914122 7156 * ARHGEF10L 0.266 1 NA 1.19879705742332 9 0.108275112560551 4 4 0 -5.7685445851528 LTS-028 chr1 17914123 19992925 2078803 * c(LOC100506730, MINOS1-NBL1, MIR4695, IFFO2, KLHDC7A, AKR7A3, EMC1, UBR4, AKR7L, HTR6, MINOS1, NBL1, PAX7, MRTO4, PQLC2, ARHGEF10L, RPS14P3, TAS1R2, ACTL8, CAPZB, IGSF21, AKR7A2, ALDH4A1) 0.248584851637518 47 0.054774569546553 1.07775305621407 2168 0.270589774906 4 3 1 -6.75496207287696 LTS-028 chr1 19992926 20005094 12169 * HTR6 NA 0 NA 0.738 1 NA NA NA NA NA LTS-028 chr1 20005095 20209022 203928 * c(OTUD3, TMCO4, HTR6, RNF186) 0.323521478568795 3 0.0226053091109146 0.829017573256456 151 0.167440745012998 3 2 1 -7.07721004343101 LTS-028 chr1 20209023 22216442 2007420 * c(LOC100506801, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, OTUD3, ALPL, PLA2G2D, PLA2G2E, HSPG2, LINC01141, PLA2G2C, SH2D5, LDLRAD2, HP1BP3, PLA2G2A, PLA2G5, CAMK2N1, KIF17, RAP1GAP, PLA2G2F, PINK1, MUL1, USP48, NBPF3, EIF4G3, CDA) 0.254575637754366 96 0.0519102295296848 1.07846249295784 2908 0.383099110389703 4 3 1 -6.73753875914232 LTS-028 chr1 22216443 22304460 88018 * c(CELA3B, HSPG2) 0 1 NA 1.12302488544205 32 0.257779129560748 4 4 0 -5.76574583510077 LTS-028 chr1 22304461 22336308 31848 * c(CELA3A, CELA3B) 0.156698854922571 13 0.110086737364633 1.07401248041974 95 0.730300703073258 7 6 1 -6.74572281970077 LTS-028 chr1 22336309 22835677 499369 * c(CELA3A, LINC00339, WNT4, ZBTB40, CDC42) 0.259 1 NA 1.0446828883184 163 0.192987424531802 4 4 0 -5.77228706877696 LTS-028 chr1 22835678 24201920 1366243 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, HNRNPR, LYPLA2, CNR2, ZNF436-AS1, E2F2, EPHA8, EPHB2, KDM1A, FUCA1, GALE, MDS2, HMGCL, HTR1D, ID3, ASAP3, PITHD1, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, ZBTB40) 0.288225453123301 62 0.0483101100927756 1.07320728015279 2147 0.234843706931909 4 3 1 -6.94416470397981 LTS-028 chr1 24201921 24297912 95992 * c(MIR378F, CNR2, PNRC2) 0 1 NA 1.00878621265428 160 0.287416471254021 4 4 0 -5.76747115269735 LTS-028 chr1 24297913 25599166 1301254 * c(RCAN3AS, SRRM1, RCAN3, MYOM3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.247726492099275 40 0.0604105399192337 1.07917944691145 1415 0.267312589506544 4 3 1 -6.75414939294726 LTS-028 chr1 25599167 25667023 67857 * c(TMEM50A, RSRP1, RHD) NA 0 NA 1.55595925415828 76 0.361916998335545 6 NA NA -5.7646240543716 LTS-028 chr1 25667024 39976920 14309897 * c(FAM229A, MATN1-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, SF3A3, RCC1, SMIM12, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, PAQR7, PHC2, AGO3, AGO4, FAM76A, TXLNA, EPB41, AK2, NA NA NA NA NA NA NA NA NA LTS-028 EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, WDTC1, NCDN, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, MYCBP, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, GRIK3, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, SERINC2, BMP8A, INPP5B, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MATN1, MTF1, NDUFS5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 OPRD1, PAFAH2, ZNF593, MECR, UTP11, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TMEM57, TRIM62, PEF1, PIGV, MAP7D1, IQCC, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, CLSPN, RRAGC, TINAGL1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, S100PBP, MEAF6, CEP85, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MRPS15, MARCKSL1, ZBTB8A, LOC653160, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, LINC01137, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, CCDC28B, NKAIN1, AKIRIN1, YRDC, LIN28A, SH3D21, SNIP1, ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, LSM10, C1orf94, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, THRAP3) 0.259430297650275 239 0.0619447189156592 1.06203775902651 16812 0.259501906975463 4 3 1 -6.76098082780343 LTS-028 NA NA NA NA LTS-028 chr1 39976921 39977402 482 * BMP8A NA 0 NA 0.446 1 NA NA NA NA NA LTS-028 chr1 39977403 39988210 10808 * c(BMP8A, PPIEL) NA 0 NA 0.589890987438436 39 0.346013578868133 2 NA NA -5.7645720447202 LTS-028 chr1 39988211 39988777 567 * c(BMP8A, PPIEL) NA 0 NA 1.1 1 NA NA NA NA NA LTS-028 chr1 39988778 41013780 1025003 * c(ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, HEYL, ZFP69, BMP8A, MYCL, HPCAL4, TRIT1, PPT1, RLF, OXCT2, SMAP2, EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, NT5C1A, MFSD2A, PABPC4) 0.279943708801855 27 0.0543534124714672 1.04927500131997 1663 0.28753033079356 4 3 1 -6.82557647540273 LTS-028 chr1 41013781 41282919 269139 * c(NFYC-AS1, ZNF684, MIR30C1, MIR30E, NFYC, KCNQ4, RIMS3) 0.106 1 NA 1.07046437280125 265 0.207269609364872 4 4 0 -5.7645907802212 LTS-028 chr1 41282920 43875958 2593039 * c(LOC100129924, SLFNL1-AS1, PPIH, EBNA1BP2, MED8, ERMAP, TMEM125, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, RIMKLA, GUCA2A, GUCA2B, SVBP, MPL, SLC2A1-AS1, FAM183A, YBX1, ZNF691, HIVEP3, P3H1, ELOVL1, SLC2A1, TIE1, CCDC30, C1orf50, PPCS, ZMYND12, KCNQ4, CDC20) 0.235259394056308 50 0.0626055484272564 1.09157460501255 2558 0.259010344257583 4 3 1 -6.82230956598618 LTS-028 chr1 43875959 43880723 4765 * SZT2 NA 0 NA 1.137 1 NA NA NA NA NA LTS-028 chr1 43880724 43919700 38977 * c(SZT2, HYI) 0.17 1 NA 1.19018927196124 404 0.210555576175099 4 4 0 -5.7695847253764 LTS-028 chr1 43919701 43998220 78520 * c(SZT2, PTPRF) NA 0 NA 1.699 1 NA NA NA NA NA LTS-028 chr1 43998221 44088348 90128 * PTPRF 0.23 1 NA 1.54793889980213 211 0.274639798732119 6 6 0 -5.76511702820938 LTS-028 chr1 44088349 46165813 2077465 * c(KDM4A-AS1, MIR5584, AKR1A1, TESK2, KIF2C, TOE1, PLK3, CCDC163, KLF17, CCDC24, BTBD19, CCDC17, DPH2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, IPP, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, ST3GAL3, SLC6A9, RPS15AP10, UROD, ERI3, TMEM53, HECTD3, HPDL, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A) 0.192915365536268 59 0.0509896277599665 1.33955534827375 2848 0.308844105672022 5 4 1 -6.79059686891342 LTS-028 chr1 46165814 46166286 473 * IPP NA 0 NA 0.807 1 NA NA NA NA NA LTS-028 chr1 46166287 47824550 1658264 * c(EFCAB14-AS1, MKNK1-AS1, LINC00853, TSPAN1, PDZK1IP1, LRRC41, DMBX1, KNCN, MOB3C, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, FAAH, MAST2, CYP4X1, CYP4A22, IPP, TEX38, NSUN4, CMPK1, LURAP1, POMGNT1, ATPAF1, STIL, TAL1, FAAHP1, UQCRH, RAD54L, PIK3R3, MKNK1, EFCAB14) 0.23182480785535 51 0.0773802274992982 1.10775424198714 2216 0.281989286930303 4 3 1 -6.81585627199317 LTS-028 chr1 47824551 47834096 9546 * CMPK1 NA 0 NA 1.823 1 NA NA NA NA NA LTS-028 chr1 47834097 58939634 11105538 * c(MIR761, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, CDKN2C, FAF1, KTI12, OSBPL9, OMA1, LRRC42, TCEANC2, PODN, CPT2, GLIS1, DAB1, SLC25A3P1, LEXM, DHCR24, DIO1, ELAVL4, C1orf168, TMEM61, CDCP2, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, RNF11, C1orf185, GPX7, FAM151A, FAM159A, MROH7, TRABD2B, LDLRAD1, SKINT1L, MAGOH, ZYG11A, NRDC, ORC1, NA NA NA NA NA NA NA NA NA LTS-028 TXNDC12, MRPL37, HSPB11, CMPK1, YIPF1, SPATA6, C1orf123, TTC22, ECHDC2, PRKAA2, NDC1, RAB3B, CYB5RL, SCP2, DMRTB1, DMRTA2, SLC1A7, COA7, TTC4, C8A, C8B, LRP8, BSND, BEND5, ZYG11B, FOXD2-AS1, AGBL4, PRPF38A, PLPP3, BTF3L4, ZFYVE9, TMEM59) 0.197724582527965 117 0.0668013504684088 1.32939668123121 7257 0.361314113498899 5 4 1 -6.75136146415646 LTS-028 NA NA NA NA LTS-028 chr1 58939635 59096111 156477 * c(OMA1, DAB1, TACSTD2) 0.355 1 NA 1.42705304453013 100 0.831915338058489 5 5 0 -5.76497835844348 LTS-028 chr1 59096112 59123995 27884 * MYSM1 0.318798831184967 15 0.085286240725822 1.31240726773139 99 0.530352813300697 6 4 2 -6.76333389354028 LTS-028 chr1 59123996 59124042 47 * MYSM1 NA 0 NA 1.017 1 NA NA NA NA NA LTS-028 chr1 59124043 59364961 240919 * c(LINC01135, MYSM1, JUN) 0.213528690942346 7 0.0797866201935184 1.07578065850382 223 0.285202894705765 5 4 1 -6.8183217625752 LTS-028 chr1 59364962 59787160 422199 * c(LINC01135, FGGY, HSD52) NA 0 NA 1.56 1 NA NA NA NA NA LTS-028 chr1 59787161 61927624 2140464 * c(MIR4711, C1orf87, CYP2J2, NFIA, HOOK1, FGGY) 0.228654030080049 3 0.0366651514838454 1.33171237517288 608 0.330089535235357 5 4 1 -6.90453258059587 LTS-028 chr1 61927625 61927729 105 * NFIA NA 0 NA 1.017 1 NA NA NA NA NA LTS-028 chr1 61927730 65157552 3229823 * c(MIR4794, PATJ, UBE2U, KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, MGC34796, NFIA, ROR1, PGM1, L1TD1, CACHD1, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7) 0.271387089863621 33 0.0580112809039864 1.12141749819575 1761 0.277666224066322 4 3 1 -6.79902686071426 LTS-028 chr1 65157553 67725120 2567568 * c(INSL5, MIR3117, MIR3671, IL23R, TCTEX1D1, AK4, SLC35D1, JAK1, LEPR, C1orf141, MIR101-1, PDE4B, LEPROT, RAVER2, CACHD1, MIER1, WDR78, SGIP1, DNAJC6) 0.258547019884901 54 0.0592388625580944 1.04383571182121 2083 0.305895960171986 4 3 1 -6.75001828842607 LTS-028 chr1 67725121 68511869 786749 * c(GNG12-AS1, IL23R, GADD45A, SERBP1, IL12RB2, GNG12, DIRAS3) NA 0 NA 1.0133335675997 374 0.278230363346039 4 NA NA -5.78759418564932 LTS-028 chr1 68511870 68591253 79384 * c(GNG12-AS1, WLS, DIRAS3) 0.16 1 NA 1.55309158435479 39 0.238259251625525 6 6 0 -5.76507159036887 LTS-028 chr1 68591254 82459771 13868518 * c(ZRANB2-AS1, PIGK, GNG12-AS1, MIR1262, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, MGC27382, CTH, SLC44A5, USP33, ADGRL2, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, MIGA1, MIR186, LHX8, MSH4, TNNI3K, PIN1P1, GIPC2, LRRC40, DEPDC1, PTGER3, PTGFR, LRRC7, RABGGTB, RPE65, ADGRL4, SNORD45C, WLS, ANKRD13C, ST6GALNAC5, FPGT, FUBP1, NEXN, NA NA NA NA NA NA NA NA NA LTS-028 SRSF11, ZRANB2) 0.214264730568546 72 0.0368797664753163 1.33016657490796 4664 0.338699557236111 5 4 1 -6.74852387130348 LTS-028 NA NA NA NA LTS-028 chr1 82459772 84544088 2084317 * c(MIR548AP, PRKACB, TTLL7) 0.284663457465982 3 0.0395094925302768 1.03850837433659 222 0.234943245627045 4 3 1 -7.00593384846479 LTS-028 chr1 84544089 84609914 65826 * PRKACB NA 0 NA 1.25 1 NA NA NA NA NA LTS-028 chr1 84609915 89318776 4708862 * c(LINC01364, MIR4423, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, CLCA4, LPAR3, DDAH1, MCOLN2, COL24A1, GNG5, GTF2B, LINC01140, CYR61, UOX, LINC01555, SH3GLB1, ZNHIT6, MCOLN3, PRKACB, PKN2, ODF2L, DNASE2B, LOC646626, RPF1, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.194633125277652 58 0.0620609466655838 1.31582774406074 2882 0.683672991871946 5 4 1 -6.76568296241714 LTS-028 chr1 89318777 93544881 4226105 * c(GLMN, GBP4, GBP5, GBP6, HFM1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.195235849738767 23 0.0607182308480102 1.22273144538077 2781 0.317582538549945 5 4 1 -6.9589284089804 LTS-028 chr1 93544882 117127747 23582866 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LINC01160, LOC100129620, CCDC18-AS1, AP4B1-AS1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, MAB21L3, SLC44A3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, NA NA NA NA NA NA NA NA NA LTS-028 PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, DR1, S1PR1, CELSR2, ALG14, HIPK1, EXTL2, F3, MTF2, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, DNTTIP2, IGSF3, PPM1J, CCDC18, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, TMED5, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, PALMD, FNBP1L, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, PTBP2, ABCD3, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, BCAR3, PROK1, CASQ2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, RTCA, SLC16A4, ARHGAP29, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.195960275342618 277 0.0510581048783812 1.31547945978337 14562 0.359106287684338 5 4 1 -6.80102719469835 LTS-028 NA NA NA NA LTS-028 chr1 117127748 117131311 3564 * IGSF3 NA 0 NA 0.846 1 NA NA NA NA NA LTS-028 chr1 117131312 120536047 3404736 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, NBPF7, NOTCH2, HAO2, GDAP2, FAM46C, PTGFRN, LINC00622, TBX15, VTCN1, TRIM45, REG4, TTF2, ZNF697, CD2, CD101) 0.195323887880822 39 0.0681545734631259 1.26343097138308 2628 0.545130196269675 5 4 1 -6.77862993551488 LTS-028 chr1 120536048 120536699 652 * NOTCH2 0.333 1 NA 1.75692579943324 25 3.67623806492452 7 7 0 -5.76441022338515 LTS-028 chr1 120536700 121116733 580034 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.327826138760449 11 0.103985051373219 1.13307244528851 144 0.30009745495242 4 3 1 -6.99407475861281 LTS-028 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 1.21077818061751 59 0.304481858607247 5 NA NA -5.77702567243751 LTS-028 chr1 143912360 144013853 101494 * FAM72D 0.359 1 NA 0.905341881164447 5 0.338878296737929 3 3 0 -5.76983566997343 LTS-028 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.434921099287387 58 0.0833077752700651 1.08211726831209 534 0.358076282571308 4 2 2 -6.73794688893151 LTS-028 chr1 145075855 145075923 69 * c(NBPF20, PDE4DIP) 0.217 1 NA 1.22737320838505 3 0.494758863824928 5 5 0 -5.76441136773182 LTS-028 chr1 145075924 155013080 9937157 * c(MIR190B, C1orf68, LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, MIR4258, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, ADAR, PIAS3, HAX1, SEMA6C, POLR3C, TXNIP, PMVK, JTB, MTMR11, MLLT11, SLC27A3, TDRKH, CD160, CELF3, VPS45, CHRNB2, PGLYRP3, CKS1B, THEM4, GABPB2, TCHHL1, RPTN, TDRD10, SHE, DCST2, LIX1L, S100A16, CREB3L4, CIART, HFE2, ANKRD35, NBPF12, LELP1, DCST1, BNIPL, CTSK, CTSS, NA NA NA NA NA NA NA NA NA LTS-028 SPRR4, PDIA3P1, ECM1, LCE4A, NUDT17, CRTC2, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, SNAPIN, CA14, LCE5A, NBPF14, C1orf43, CHTOP, LCE2B, GJA5, GJA8, SLC39A1, RNF115, RIIAD1, THEM5, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, S100A7A, LINGO4, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, ILF2, IVL, KCNN3, NOTCH2NL, LINC01138, LOC388692, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 LYSMD1, HRNR, FLG2, C1orf189, LOR, ARNT, MCL1, SMCP, HIST2H2BF, KPRP, LCE6A, NPR1, CRNN, BOLA1, ZBTB7B, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, UBE2Q1, PRKAB2, FAM63A, LENEP, CDC42SE1, PSMB4, OTUD7B, PSMD4, PGLYRP4, ATP8B2, LINC00869, PBXIP1, S100A14, PRR9, GATAD2B, CGN, ZNF687, PRUNE1, RAB13, RFX5, BCL9, RORC, RPS27, S100A1, S100A2, S100A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A12, S100A13, NBPF13P, PPIAL4D, LOC645166, S100A7L2, SHC1, MRPL9, INTS3, GPR89A, HIST2H3D, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, MIR554, VPS72, TCHH, TPM3, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, FLAD1, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ANXA9, POLR3GL, LCE3D, ITGA10, PEX11B, AQP10, SELENBP1, PYGO2, NUP210L, PRPF3, SEC22B, CHD1L, PDE4DIP, SETDB1, UBAP2L, SV2A, DENND4B, RBM8A) 0.264457273839306 200 0.0654579315592855 1.06557919432507 13015 0.260468931675347 4 3 1 -6.74869481839119 LTS-028 NA NA NA NA LTS-028 chr1 155013081 155300910 287830 * c(LOC100505666, SCAMP3, FAM189B, CLK2, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, FDPS, RUSC1, GBA, GBAP1, RUSC1-AS1, MTX1, MUC1, PKLR, DPM3, SLC50A1, HCN3, MIR92B, THBS3, TRIM46, ADAM15) 0.242559508281479 25 0.0794113132158552 1.14057597051694 1434 0.241881881868203 4 3 1 -6.76828486947607 LTS-028 chr1 155300911 155305038 4128 * character(0) NA 0 NA 0.969 1 NA NA NA NA NA LTS-028 chr1 155305039 156025096 720058 * c(MSTO2P, KIAA0907, SYT11, LAMTOR2, RXFP4, GON4L, MSTO1, YY1AP1, ASH1L, UBQLN4, RIT1, ASH1L-AS1, POU5F1P4, SSR2, SCARNA4, SNORA80E, MIR555, DAP3, ARHGEF2) 0.23742491837233 5 0.125968249967998 1.05873256433336 1521 0.224489339959977 4 3 1 -6.75346490824226 LTS-028 chr1 156025097 156028299 3203 * LAMTOR2 NA 0 NA 1.15104609757885 15 0.221980007679799 4 NA NA -5.76457815054801 LTS-028 chr1 156028300 156030863 2564 * LAMTOR2 NA 0 NA 1.21 1 NA NA NA NA NA LTS-028 chr1 156030864 156046473 15610 * c(RAB25, MEX3A) 0.328 1 NA 1.37217882195256 33 0.30627746011706 5 5 0 -5.76447511242203 LTS-028 chr1 156046474 160398520 4352047 * c(CADM3-AS1, LINC01133, PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, OR10J5, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, LRRC71, PYHIN1, TTC24, ETV3, FCER1A, SMG5, NCSTN, ACKR1, CFAP45, OR10J1, C1orf204, HDGF, APCS, IFI16, OR10R2, FCRL6, CYCSP52, INSRR, PEAR1, KCNJ9, KCNJ10, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, MIR9-1, MEF2D, MNDA, ETV3L, NA NA NA NA NA NA NA NA NA LTS-028 OR10J3, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NTRK1, DCAF8, RRNAD1, GPATCH4, DUSP23, KIRREL, PRCC, SLAMF8, RHBG, VANGL2, IGSF9, CADM3, PEX19, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, SPTA1, CCT3, MIR765, FCRL2, MRPL24, PAQR6, OR6N2, OR6K2, ISG20L2, FCRL5, FCRL4, TAGLN2, TMEM79, CASQ1, PEA15, SLAMF9, SH2D2A, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, MEX3A, PIGM, IGSF8, AIM2, SLC25A44, ARHGEF11) 0.373367286021606 148 0.0821298537634503 1.33264739163544 7396 0.301052916641553 5 3 2 -6.79797827439398 LTS-028 NA NA NA NA LTS-028 chr1 160398521 160455140 56620 * SLAMF6 NA 0 NA 1.226 1 NA NA NA NA NA LTS-028 chr1 160455141 161565479 1110339 * c(TSTD1, MIR5187, SLAMF6, KLHDC9, ITLN2, FCER1G, FCGR2A, FCGR3A, ARHGAP30, CFAP126, USP21, HSPA6, APOA2, LY9, MPZ, NDUFS2, NIT1, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SLAMF7, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, CD84, FCGR2C, DEDD, ADAMTS4, CD48, NR1I3) 0.374400682084689 52 0.0801141413298903 1.2684149438319 2310 0.323391174306586 5 3 2 -6.81373047461497 LTS-028 chr1 161565480 161565500 21 * FCGR2C NA 0 NA 0.992 1 NA NA NA NA NA LTS-028 chr1 161565501 161571035 5535 * FCGR2C 0.368666836338291 3 0.0755932095715834 0.830762135055978 44 0.704838590897064 11 7 4 -6.74486420858494 LTS-028 chr1 161571036 161575983 4948 * HSPA7 NA 0 NA 1.668 1 NA NA NA NA NA LTS-028 chr1 161575984 172387577 10811594 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-028 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.384412925749642 186 0.0630378732748449 1.28496056180038 7135 0.316383455624817 5 3 2 -6.8743617624425 LTS-028 NA NA NA NA LTS-028 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 1.058 1 NA NA NA NA NA LTS-028 chr1 172389836 176105755 3715920 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.397220451750931 41 0.045040564372845 1.23245734502348 2230 0.637490117926358 5 3 2 -6.77267147329717 LTS-028 chr1 176105756 176118085 12330 * RFWD2 NA 0 NA 1.709 1 NA NA NA NA NA LTS-028 chr1 176118086 178888006 2769921 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.369632956481174 17 0.105047538258246 1.42126358809539 1387 0.600226042189566 5 3 2 -6.80115707690438 LTS-028 chr1 178888007 181479793 2591787 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, IER5, RALGPS2, QSOX1, KIAA1614, TOR3A, SOAT1, CACNA1E, NPHS2, ACBD6, LHX4, XPR1, CEP350, FAM20B) 0.382153671086833 80 0.0650635473200887 1.26110210211161 2835 0.33826168296411 5 3 2 -6.8268977297794 LTS-028 chr1 181479794 181480447 654 * CACNA1E NA 0 NA 1.833 1 NA NA NA NA NA LTS-028 chr1 181480448 183775685 2295238 * c(ARPC5, ZNF648, TEDDM1, DHX9, NMNAT2, RGL1, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, SMG7) 0.400016112662726 36 0.0359375450310277 1.34360687271845 2288 0.282663143610771 5 3 2 -6.73346198031295 LTS-028 chr1 183775686 183816729 41044 * RGL1 NA 0 NA 1.197 1 NA NA NA NA NA LTS-028 chr1 183816730 196716667 12899938 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2) 0.396352470835355 48 0.0529720922108188 1.26520479539569 3675 0.31214261740397 5 3 2 -6.97310333793307 LTS-028 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.629 1 NA NA NA NA NA LTS-028 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.577653873608796 115 0.266730986331571 2 NA NA -5.76496116397857 LTS-028 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.24 1 NA NA NA NA NA LTS-028 chr1 196857130 200828032 3970903 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5, DDX59, KIF14) 0.398838094055253 56 0.0524653874770489 1.24422801601833 2339 0.334530939030917 5 3 2 -6.84308640264263 LTS-028 chr1 200828033 200828036 4 * CAMSAP2 NA 0 NA 1.305 1 NA NA NA NA NA LTS-028 chr1 200828037 211745925 10917889 * c(MIR1231, ZBED6, MIR4260, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, PHLDA3, TMEM9, SLC41A1, SYT14, DSTYK, LMOD1, OPTC, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, NA NA NA NA NA NA NA NA NA LTS-028 GPR25, UBE2T, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, RPS10P7, KISS1, TMEM81, LAD1, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, LAX1, KLHDC8A, ETNK2, AVPR1B, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, CAMK1G, SERTAD4-AS1, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR205HG, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2) 0.382764165749119 270 0.0659265004066819 1.32114119855492 12830 0.284400235182576 5 3 2 -6.78832013068012 LTS-028 NA NA NA NA LTS-028 chr1 211745926 215256757 3510832 * c(MIR3122, LINC00538, CENPF, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, KCNK2, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, SLC30A1, VASH2, ANGEL2, LPGAT1) 0.378274482659491 53 0.0829724323393131 1.24959965112253 2163 0.350418894835056 5 3 2 -6.85403064484345 LTS-028 chr1 215256758 215259677 2920 * KCNK2 NA 0 NA 1.493 1 NA NA NA NA NA LTS-028 chr1 215259678 219782170 4522493 * c(LINC00210, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.362765181213854 23 0.0916083345363387 1.39884080278758 1496 0.401395261377635 5 3 2 -6.86643725075446 LTS-028 chr1 219782171 219782887 717 * character(0) NA 0 NA 0.985 1 NA NA NA NA NA LTS-028 chr1 219782888 219785375 2488 * character(0) 0.436 1 NA 0.767036705801847 48 0.503334779511567 3 3 0 -5.76443469985095 LTS-028 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 1.693 1 NA NA NA NA NA LTS-028 chr1 220088472 223830628 3742157 * c(BPNT1, DUSP10, BROX, CCDC185, EPRS, RAB3GAP2, RNU5F-1, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, C1orf115, HHIPL2, DISP1, TAF1A) 0.367947662883327 32 0.0826541326562761 1.27723713685719 2245 0.301003515447822 5 3 2 -6.8768198541873 LTS-028 chr1 223830629 223841917 11289 * CAPN8 NA 0 NA 1.491 1 NA NA NA NA NA LTS-028 chr1 223841918 224302049 460132 * c(FBXO28, CAPN8, TP53BP2, CAPN2) 0.307766457443669 3 0.0839424405967169 1.49958805023114 331 0.348034141586143 6 4 2 -6.81531548527199 LTS-028 chr1 224302050 227843238 3541189 * c(MIR320B2, MIR4742, LEFTY1, DNAH14, PARP1, CNIH3, SDE2, EPHX1, FBXO28, LIN9, CNIH4, PYCR2, H3F3A, ZNF678, ITPKB, STUM, LBR, H3F3AP4, NVL, ENAH, PSEN2, COQ8A, ACBD3, SRP9, LEFTY2, WDR26, MIXL1, CDC42BPA, DEGS1, TMEM63A) 0.373354317564037 89 0.0665423805295338 1.23391417922198 3228 0.288896707352401 5 3 2 -6.99226979301669 LTS-028 chr1 227843239 227843446 208 * ZNF678 NA 0 NA 1.435 1 NA NA NA NA NA LTS-028 chr1 227843447 233802630 5959184 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR3620, MIR4666A, MIR4427, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, C1orf131, MRPL55, HIST3H2BB, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GUK1, ZNF678, PRSS38, ARF1, FAM89A, KCNK1, ZNF847P, TRIM67, TRIM17, EGLN1, MAP10, NUP133, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, JMJD4, TSNAX, WNT9A, C1orf35, NA NA NA NA NA NA NA NA NA LTS-028 TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, WNT3A, HIST3H2A, URB2) 0.38681024498254 153 0.0563859022189079 1.30715838364019 5541 0.269896987539317 5 3 2 -6.7938689267731 LTS-028 NA NA NA NA LTS-028 chr1 233802631 236899015 3096385 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.372428686077096 31 0.0862163320605701 1.19667115698326 2259 0.281288328965439 5 3 2 -7.07358296990066 LTS-028 chr1 236899016 247016620 10117605 * c(AKT3, LOC100130331, MIR3123, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, COX20, WDR64, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, LINC01139, MAP1LC3C, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, EFCAB2, KMO, ACTN2, EXO1, CEP170) 0.377778985937506 104 0.0699632938808964 1.30658571989385 4351 0.366608738838098 5 3 2 -6.82016533057605 LTS-028 chr1 247016621 247274421 257801 * c(ZNF670-ZNF695, AHCTF1, C1orf229, ZNF695, ZNF669, ZNF670) 0.424919774108942 11 0.0493560349077819 1.17123977681702 366 0.361675774787059 4 2 2 -6.81556900437338 LTS-028 chr1 247274422 247274538 117 * C1orf229 NA 0 NA 1.733 1 NA NA NA NA NA LTS-028 chr1 247274539 249152001 1877463 * c(MIR3124, MIR3916, NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, OR2W5, OR13G1, ZNF692, LYPD8, ZNF124, ZNF672, SH3BP5L, OR2L5, OR2G3, NA NA NA NA NA NA NA NA NA LTS-028 OR2G2, OR2C3, ZNF496) 0.375063582668359 51 0.0837335456472892 1.36177561417199 1685 0.42086101554434 5 3 2 -6.78972294437646 LTS-028 NA NA NA NA LTS-028 chr1 249152002 249214134 62133 * c(PGBD2, ZNF692) NA 0 NA 1.27380789968579 95 0.213874919228572 5 NA NA -5.76635650288513 LTS-028 chr2 38824 40573 1750 * FAM110C 0.125 1 NA 1.31137474722011 33 0.303578031504457 5 5 0 -5.76441460426734 LTS-028 chr2 40574 9695888 9655315 * c(LINC01304, RNASEH1-AS1, LOC100506274, CMPK2, MBOAT2, TMEM18, LINC01105, MYT1L, RNASEH1, SH3YL1, FAM150B, IAH1, LINC00298, LINC00299, ID2, LINC01115, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, FAM110C, SOX11, ADAM17, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, ASAP2, RSAD2, ITGB1BP1, RNF144A) 0.201270877004756 64 0.049151036660094 1.25342272122889 3128 0.318256268280818 5 4 1 -6.97949122620664 LTS-028 chr2 9695889 9725561 29673 * c(YWHAQ, ADAM17) NA 0 NA 1.20020216807087 19 0.133261647395891 4 NA NA -5.77596552199585 LTS-028 chr2 9725562 9727509 1948 * YWHAQ NA 0 NA 1.926 1 NA NA NA NA NA LTS-028 chr2 9727510 9727657 148 * YWHAQ 0.304 1 NA 2.03809289943025 3 0.144382593595396 8 8 0 -5.76441619812491 LTS-028 chr2 9727658 10711159 983502 * c(SNORA80B, MIR4261, YWHAQ, CYS1, GRHL1, HPCAL1, C2orf48, ODC1, RRM2, NOL10, KLF11, TAF1B) 0.334572885425552 28 0.0491784355029572 1.47084692636944 706 0.487902936525941 6 4 2 -6.75165242479463 LTS-028 chr2 10711160 10908893 197734 * c(ATP6V1C2, NOL10) 0.276 1 NA 1.09946099994008 149 0.179043082154965 4 4 0 -5.76585997419538 LTS-028 chr2 10908894 10915020 6127 * ATP6V1C2 0.266 1 NA 1.21188960972278 15 0.25977173129683 5 5 0 -5.76494078263527 LTS-028 chr2 10915021 26535917 15620897 * c(MIR1301, MIR3125, MIR4262, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, KLHL29, OSR1, TTC32, C2orf50, PQLC3, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, FLJ33534, TRIB2, HADHA, HADHB, APOB, MSGN1, GEN1, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, MYCN, ITSN2, NA NA NA NA NA NA NA NA NA LTS-028 DNAJC27, NBAS, SF3B6, POMC, ATAD2B, ASXL2, WDR35, RDH14, LDAH, SDC1, HS1BP3, LOC645949, FAM228A, RAD51AP2, DNAJC27-AS1, VSNL1, CENPO, SMC6, WDCP, FAM49A, NCOA1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A) 0.206482926144305 154 0.0448320428019337 1.22472675052274 7289 0.346853648735844 5 4 1 -7.28626464452753 LTS-028 NA NA NA NA LTS-028 chr2 26535918 26535922 5 * ADGRF3 NA 0 NA 1.654 1 NA NA NA NA NA LTS-028 chr2 26535923 27745515 1209593 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, EMILIN1, CIB4, ZNF513, TCF23, ADGRF3, KRTCAP3, MAPRE3, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, PPM1G, SLC35F6, DPYSL5, TRIM54, AGBL5, FNDC4, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17) 0.20162426776923 35 0.0298929462464662 1.28817152022216 3298 0.266835404487629 5 4 1 -6.78165660015611 LTS-028 chr2 27745516 27746079 564 * GCKR NA 0 NA 1.179 1 NA NA NA NA NA LTS-028 chr2 27746080 30865405 3119326 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, LCLAT1, GCKR, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, RBKS, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.202677260081786 65 0.0515764835350972 1.20450503562762 2619 0.265251417719712 5 4 1 -7.02031621108506 LTS-028 chr2 30865406 30866886 1481 * LCLAT1 0.3717505004004 2 0.0883883476483184 0.581259316450668 40 0.413693801667926 8 5 3 -6.74339481377539 LTS-028 chr2 30866887 36778170 5911284 * c(LOC100271832, LOC100288911, MIR4765, MYADML, LCLAT1, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13) 0.20982014718098 42 0.046220831590728 1.22960041164055 2494 0.305343832211449 5 4 1 -6.99158380631557 LTS-028 chr2 36778171 38917110 2138940 * c(CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, SULT6B1, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, STRN, HNRNPLL, FEZ2) 0.190948631496342 31 0.0316584596042848 1.15464811721875 2008 0.293409227758936 5 4 1 -7.223965599057 LTS-028 chr2 38917111 38925415 8305 * GALM NA 0 NA 1.766 1 NA NA NA NA NA LTS-028 chr2 38925416 38972385 46970 * c(GALM, SRSF7) NA 0 NA 1.98772473371129 71 0.401161597569091 8 NA NA -5.76510245223156 LTS-028 chr2 38972386 38973179 794 * SRSF7 NA 0 NA 0.912 1 NA NA NA NA NA LTS-028 chr2 38973180 40340013 1366834 * c(SLC8A1-AS1, ARHGEF33, TMEM178A, CDKL4, LOC375196, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57) 0.240612061676466 2 0.0509116882454314 1.13146481946696 990 0.275191486414708 4 3 1 -6.83628128275172 LTS-028 chr2 40340014 61524043 21184030 * c(MIR216B, SLC8A1-AS1, LINC01126, LINC01119, MIR3682, MIR4432, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, PUS10, OXER1, KCNG3, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, LOC339803, C2orf74, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, MIR216A, NA NA NA NA NA NA NA NA NA LTS-028 MIR217, EPCAM, MSH2, MTIF2, CHAC2, ASB3, DYNC2LI1, PEX13, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, VRK2, CAMKMT, FBXO11, CALM2, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, ACYP2) 0.212644853900492 205 0.0521171463077509 1.21110351112678 8848 0.320040613382873 5 4 1 -7.76355573346144 LTS-028 NA NA NA NA LTS-028 chr2 61524044 61528138 4095 * USP34 NA 0 NA 1.587 1 NA NA NA NA NA LTS-028 chr2 61528139 61705573 177435 * c(SNORA70B, XPO1, USP34) 0.211095453775065 3 0.0245831920899897 1.42990546446121 179 0.325552638399832 5 4 1 -6.74280845401779 LTS-028 chr2 61705574 70900468 9194895 * c(SNORA36C, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, ADD2, COMMD1, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339807, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, NA NA NA NA NA NA NA NA NA LTS-028 PELI1, RAB1A, GMCL1, LOC644838, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, FAM136A, SERTAD2, ARHGAP25) 0.19138126897875 90 0.0498176963679648 1.17284763239503 4825 0.327223910843216 5 4 1 -7.58499815756138 LTS-028 NA NA NA NA LTS-028 chr2 70900469 70901801 1333 * ADD2 NA 0 NA 1.417 1 NA NA NA NA NA LTS-028 chr2 70901802 73513476 2611675 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.196378411842203 49 0.0516036536965158 1.273627596475 2554 0.284155182264947 5 4 1 -6.81376757655667 LTS-028 chr2 73513477 73518078 4602 * EGR4 NA 0 NA 1.07 1 NA NA NA NA NA LTS-028 chr2 73518079 74483037 964959 * c(BOLA3-AS1, STAMBP, MTHFD2, DGUOK, EGR4, ALMS1P1, TET3, C2orf78, BOLA3, TPRKB, MOB1A, SLC4A5, ACTG2, ALMS1, DUSP11, NAT8) 0.18569581386598 24 0.0553596279412814 1.14772379446813 1298 0.308549513148641 5 4 1 -6.97487593241869 LTS-028 chr2 74483038 85663549 11180512 * c(SNAR-H, DCTN1-AS1, MIR4264, INO80B-WBP1, MIR5000, SEMA4F, TGOLN2, MRPL53, TRABD2A, REG3G, M1AP, CTNNA2, LBX2-AS1, DCTN1, DQX1, DHFRP3, DNAH6, DOK1, WBP1, HTRA2, SH2D6, HK2, TLX2, LRRTM1, C2orf81, FUNDC2P2, REG3A, RETSAT, AUP1, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, TTC31, TACR1, GCFC2, MOGS, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, LOXL3, PCGF1, CCDC142, LBX2, SUCLG1, TMSB10, NA NA NA NA NA NA NA NA NA LTS-028 MRPL19) 0.194431177130972 40 0.0631343652611086 1.25013753340276 3586 0.309075855704049 5 4 1 -7.06904304980409 LTS-028 NA NA NA NA LTS-028 chr2 85663550 86066354 402805 * c(PARTICL, GNLY, USP39, VAMP5, TMEM150A, GGCX, SH2D6, LOC284950, C2orf68, MAT2A, RNF181, SFTPB, ATOH8, VAMP8, ST3GAL5) 0.178422226915401 11 0.0257854786476984 1.37498252809234 640 0.296391005398251 6 5 1 -6.80577298747743 LTS-028 chr2 86066355 90007852 3941498 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, MIR4436A, MIR4780, IMMT, CYTOR, SMYD1, TEX37, FABP1, RPIA, POLR1A, LOC285074, FOXI3, KRCC1, MRPL35, CHMP3, PTCD3, THNSL2, KDM3A, ANKRD36BP2, RMND5A, REEP1, SNORD94, RNF103, ST3GAL5, LOC90784, CD8A, CD8B, EIF2AK3) 0.205290757955414 30 0.0405708688876496 1.21134546723142 2304 0.386215020539259 5 4 1 -6.88943638072575 LTS-028 chr2 90007853 91809324 1801472 * LOC654342 0.369 1 NA 1.34923423206737 105 1.69611100146896 5 5 0 -5.76443823988835 LTS-028 chr2 91809325 91955404 146080 * LOC654342 0.303915566039364 12 0.0784120333220416 1.19195305010906 75 0.5150520596446 7 5 2 -6.81553992576253 LTS-028 chr2 91955405 91955470 66 * character(0) NA 0 NA 1.16994142120387 3 0.0715914333795135 4 NA NA -5.76446120981101 LTS-028 chr2 95537183 95537572 390 * c(TEKT4, LOC442028) 0.2 1 NA 1.51944413881249 9 0.670474355297137 6 6 0 -5.76441143172975 LTS-028 chr2 95537573 96504630 967058 * c(TRIM43, TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, TRIM43B, ZNF2, ZNF514) 0.132827071006021 6 0.181065365729249 1.24767222237443 743 0.308059734458954 5 4 1 -6.86627582088358 LTS-028 chr2 96504631 96521008 16378 * character(0) NA 0 NA 0.804 1 NA NA NA NA NA LTS-028 chr2 96521009 96607003 85995 * character(0) 0.322109021032763 10 0.125864300825223 0.935903767186163 46 0.258649794945058 3 2 1 -6.76059280552044 LTS-028 chr2 96607004 96610420 3417 * character(0) 0.339 1 NA 0.884106130201525 3 0.324062236820851 3 3 0 -5.76452723969618 LTS-028 chr2 96610421 96619774 9354 * character(0) 0.364837290451208 20 0.066663254298633 0.841535267745854 40 0.217298913823144 3 2 1 -6.80809335340519 LTS-028 chr2 96619775 96652882 33108 * character(0) NA 0 NA 0.946525532276515 15 0.127652914838114 4 NA NA -5.78493556891881 LTS-028 chr2 96652883 96657254 4372 * character(0) NA 0 NA 1.3 1 NA NA NA NA NA LTS-028 chr2 96657255 96780122 122868 * c(GPAT2, ADRA2B, FAHD2CP) 0.184 1 NA 1.21887828762642 119 0.21119269823972 5 5 0 -5.77865847129625 LTS-028 chr2 96780123 101179122 4399000 * c(MIR3127, ACTR1B, TXNDC9, ARID5A, MGAT4A, CNGA3, NMS, LYG1, MITD1, COX5B, C2orf15, ITPRIPL1, ADRA2B, FAHD2B, LONRF2, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, STARD7-AS1, KIAA1211L, INPP4A, ANKRD36, AFF3, ASTL, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, LINC01125, ZAP70, TSGA10, LMAN2L, FER1L5, NEURL3, CIAO1, CHST10, EIF5B NA NA NA NA NA NA NA NA NA LTS-028 ) 0.235646572105488 94 0.0633112578776972 1.20575336964873 4760 0.279623523933226 5 4 1 -7.18235687911313 LTS-028 NA NA NA NA LTS-028 chr2 101179123 101437561 258439 * c(NPAS2, PDCL3) 0.171 1 NA 1.31221898018642 47 0.205011504381509 5 5 0 -5.76576544920958 LTS-028 chr2 101437562 112641231 11203670 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, EDAR, TBC1D8, GPR45, TMEM182, LINC01102, LINC01106, SEPT10, SULT1C2P1, CCDC138, CREG2, LINC00116, FHL2, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, SH3RF3, IL1R1, SLC9A4, LIMS1, SULT1C3, NPAS2, NPHP1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, SLC9A2, NA NA NA NA NA NA NA NA NA LTS-028 SULT1C2, SNORD89, BUB1, RGPD4-AS1, RFX8, IL1R2, MALL, C2orf49, UXS1, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, GCC2) 0.198598132240511 66 0.0494228130746769 1.2190038112653 4783 0.415793751004985 5 4 1 -7.07619595470788 LTS-028 NA NA NA NA LTS-028 chr2 112641232 112656136 14905 * ANAPC1 NA 0 NA 1.947 1 NA NA NA NA NA LTS-028 chr2 112656137 113940178 1284042 * c(MERTK, FBLN7, TTL, CKAP2L, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, ZC3H6, FLJ42351, IL36G, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, IL1F10, TMEM87B) 0.167805570001767 45 0.0471248824449944 1.45341953026857 1721 0.346769272077228 6 5 1 -6.80293209944951 LTS-028 chr2 113940179 113940277 99 * PSD4 NA 0 NA 1.744 1 NA NA NA NA NA LTS-028 chr2 113940278 114390662 450385 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, WASH2P, FAM138B, PAX8-AS1, PAX8, DDX11L2) 0.148088022106227 9 0.020386542402063 1.75356954726896 300 0.412859637813043 7 6 1 -6.7458744238861 LTS-028 chr2 114390663 114391683 1021 * RABL2A NA 0 NA 1.4 1 NA NA NA NA NA LTS-028 chr2 114391684 144381856 29990173 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, LOC100499194, MIR3679, LOC100507600, MIR4783, MIR4782, MIR4784, ACTR3, MAP3K2, RABL2A, NXPH2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, C2orf76, TMEM37, LOC150776, WTH3DI, DARS, DBI, C1QL2, CFAP221, EN1, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, HNMT, SPOPL, NA NA NA NA NA NA NA NA NA LTS-028 CYP27C1, NCKAP5, GPR148, INHBB, DPP10-AS1, LOC389033, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LINC01191, FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, INSIG2, LRP1B, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, ARHGAP15, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, YY1P2, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, TMEM185B, SAP130, MZT2B, MAP3K19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SLC35F5, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, MARCO, DDX18, KYNU, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.205589224586448 189 0.0612191783423745 1.25324520086779 10275 0.329505112528718 5 4 1 -7.3666549742672 LTS-028 NA NA NA NA LTS-028 chr2 144381857 144460956 79100 * ARHGAP15 NA 0 NA 0.846 1 NA NA NA NA NA LTS-028 chr2 144460957 144728314 267358 * c(ARHGAP15, GTDC1) NA 0 NA 0.827124385000937 60 0.154379174958985 3 NA NA -5.76520085854674 LTS-028 chr2 144728315 165539112 20810798 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, NA NA NA NA NA NA NA NA NA LTS-028 TNFAIP6, PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.210137101145658 103 0.0306655254755841 1.23236700592459 7629 0.283723971131436 5 4 1 -7.62839693720394 LTS-028 NA NA NA NA LTS-028 chr2 165539113 165542581 3469 * COBLL1 NA 0 NA 1.74544095064167 69 0.552699087891577 7 NA NA -5.76443629114648 LTS-028 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.182 1 NA NA NA NA NA LTS-028 chr2 165544234 196601733 31057500 * c(MIR933, LOC100130691, NEMP2, SP9, MIR1246, MIR548N, MIR1258, MIR1245A, SNORA70F, MIR3128, MIR3129, MIR3606, NA, LOC100506124, TTC21B-AS1, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, MIR1245B, MIR4774, CERS6-AS1, OSGEPL1-AS1, DHRS9, CALCRL, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, NOSTRIN, DIRC1, COL3A1, COL5A2, NUP35, XIRP2, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, DUSP19, ANKAR, TTC30B, NA NA NA NA NA NA NA NA NA LTS-028 ZSWIM2, ZNF385B, KLHL23, PPP1R1C, SLC38A11, GPR155, FAM171B, DLX1, DLX2, DYNC1I2, HNRNPA3, COBLL1, TMEFF2, FRZB, CERS6, METAP1D, GAD1, GALNT3, GORASP2, HIBCH, MSTN, STK39, GLS, CCDC141, LINC01305, METTL5, OLA1, SLC40A1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, INPP1, ITGA6, ITGA4, ITGAV, LINC01116, CERKL, SP5, HAGLR, FSIP2, LRP2, MIR10B, LINC01124, MYO1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 NAB1, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, GULP1, PDK1, FKBP7, ZAK, ATP5G3, PMS1, DNAJC10, ASNSD1, MFSD6, ZC3H15, SLC39A10, SPC25, CWC22, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, PCGEM1, OSGEPL1, NABP1, PLEKHA3, SP3, SSB, SSFA2, STAT1, STAT4, MIR561, TFPI, TTN, WIPF1, SCRN3, FASTKD1, TTC21B, METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, WDR75, C2orf88, SDPR, HAT1, AGPS, PRKRA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, SESTD1, ZNF804A, TTC30A, PPIG, ORMDL1, CIR1, TLK1) 0.207207910146468 312 0.0498447387398893 1.22242922675722 19446 0.300185530076232 5 4 1 -8.06565239200294 LTS-028 NA NA NA NA LTS-028 chr2 196601734 198570113 1968380 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, DNAH7, SLC39A10, HECW2, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.205440834962892 42 0.0353815112121601 1.10477045456045 1977 0.241804758667364 5 4 1 -7.39884481784663 LTS-028 chr2 198570114 198570126 13 * MARS2 NA 0 NA 1.42 1 NA NA NA NA NA LTS-028 chr2 198570127 203826688 5256562 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, TYW5, ICA1L, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SPATS2L, FAM126B, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, SNORD11, SNORD70, SUMO1, C2orf47, CARF, FZD7, CASP8, CASP10, CFLAR, MARS2, BZW1) 0.19516685634816 75 0.0505704859978036 1.17872073344519 4159 0.329774993330401 5 4 1 -7.20745321408009 LTS-028 chr2 203826689 220330804 16504116 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, ABCB6, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, PARD3B, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, NA NA NA NA NA NA NA NA NA LTS-028 DNPEP, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PRKAG3, FEV, INO80D, ANKZF1, MREG, PECR, CYP20A1, PTH2R, MARCH4, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, TMBIM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RNF25, LINC00607, RAPH1, NBEAL1, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, ATG9A, FAM134A, GLB1L, SPAG16, CARF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, CD28, TTLL4) 0.204337044241386 232 0.0452510782176808 1.25193106169327 12420 0.42648789421834 5 4 1 -6.96839417312973 LTS-028 NA NA NA NA LTS-028 chr2 220330805 220330826 22 * SPEG NA 0 NA 1.411 1 NA NA NA NA NA LTS-028 chr2 220330827 224463589 4132763 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, CCDC140, EPHA4, ACSL3, OBSL1, KCNE4, GMPPA, INHA, PAX3, ASIC4, SLC4A3, SCG2, CHPF) 0.211633823244848 12 0.04895514335191 1.32739343833659 1782 0.344774457659502 5 4 1 -6.73629290846482 LTS-028 chr2 224463590 239353375 14889786 * c(LOC100286922, MIR1471, UBE2F-SCLY, MIR4439, MIR4777, MIR5702, MIR5703, ARL4C, RAMP1, NMUR1, COPS8, SP140, CHRND, CHRNG, AGAP1, COL4A3, COL4A4, COL6A3, DIS3L2, AP1S3, SPATA3, FBXO36, UBE2F, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, DAW1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, TRAF3IP1, GBX2, AGFG1, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, NA NA NA NA NA NA NA NA NA LTS-028 IRS1, RBM44, KCNJ13, KLHL30, C2orf82, ASB18, DNAJB3, NCL, NEU2, NPPC, PRLH, PDE6D, SCLY, ASB1, CAB39, SERPINE2, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, PID1, ATG16L1, USP40, HJURP, HES6, DOCK10, C2orf83, MFF, ACKR3, PSMD1, PTMA, WDFY1, NYAP2, SNORD20, SAG, CCL20, RAB17, LOC643387, LOC646736, PRSS56, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SPP2, SCARNA6, SCARNA5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SCG2, TRPM8, MLPH, IQCA1, FAM124B, TM4SF20, ARMC9, EFHD1, SPHKAP, SLC19A3, ILKAP, ITM2C, RHBDD1, CUL3, DGKD, PER2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.210174135669908 290 0.0480929504359738 1.21230767750511 10753 0.310432255040409 5 4 1 -7.51827491508688 LTS-028 NA NA NA NA LTS-028 chr2 239353376 239354958 1583 * ASB1 NA 0 NA 1.755 1 NA NA NA NA NA LTS-028 chr2 239354959 242742875 3387917 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2) 0.206823384377667 129 0.056124693547272 1.27474992049312 4051 0.330788027021775 5 4 1 -6.77650341792253 LTS-028 chr2 242742876 243037214 294339 * c(NEU4, RTP5, PDCD1, GAL3ST2, LOC728323) NA 0 NA 1.21922000759572 235 0.229415257065822 5 NA NA -5.79309277920473 LTS-028 chr3 239351 425534 186184 * CHL1 0 1 NA 1.12090933765848 85 0.216008396714064 4 4 0 -5.76807093035378 LTS-028 chr3 425535 1424850 999316 * c(CHL1, CNTN6) 0.435222637472262 9 0.158664303203686 1.13181282880623 221 0.279453875204706 4 2 2 -6.75248516733708 LTS-028 chr3 1424851 2969052 1544202 * c(CNTN4-AS2, CNTN4, CNTN6) 0.462 1 NA 1.11035880322033 103 0.153427212009843 4 4 0 -5.79883271819082 LTS-028 chr3 2969053 15062428 12093376 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, NA NA NA NA NA NA NA NA NA LTS-028 ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, SETMAR, MTMR14, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.449660687781175 199 0.0772547870144228 1.02871765209366 8234 0.241908099214927 4 2 2 -6.99735600557586 LTS-028 NA NA NA NA LTS-028 chr3 15062429 21706491 6644063 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, DPH3, LOC339862, COL6A4P1, VENTXP7, RAB5A, SATB1, RBSN, MRPS25, BTD, MIR563, NR2C2, ZNF385D, COLQ, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5) 0.437884726772832 65 0.1020705756026 0.969459615026512 2878 0.243396615118019 4 2 2 -7.40897167230629 LTS-028 chr3 21706492 21792258 85767 * ZNF385D NA 0 NA 1.176 1 NA NA NA NA NA LTS-028 chr3 21792259 24020989 2228731 * c(MIR548AC, NKIRAS1, RPL15, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0.412925914467579 4 0.0659109247393784 1.30679024687774 330 0.310464277741455 5 3 2 -6.76197743724423 LTS-028 chr3 24020990 26752211 2731222 * c(MIR4792, MIR4442, LRRC3B, LINC00691, LINC00692, OXSM, NGLY1, RARB, THRB-AS1, THRB, TOP2B, NR1D2) 0.450174312866964 4 0.0294886984001216 1.04961759002939 611 0.276629113707146 4 2 2 -6.78947627848644 LTS-028 chr3 26752212 27151599 399388 * LRRC3B NA 0 NA 0.685 1 NA NA NA NA NA LTS-028 chr3 27151600 28555627 1404028 * c(ZCWPW2, CMC1, NEK10, AZI2, EOMES, SLC4A7) 0.433980979442505 5 0.0317411404962078 0.925639272202452 764 0.201487116847476 4 2 2 -7.22139646805729 LTS-028 chr3 28555628 28557024 1397 * ZCWPW2 NA 0 NA 1.058 1 NA NA NA NA NA LTS-028 chr3 28557025 42956220 14399196 * c(ACVR2B-AS1, PDCD6IP, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, ZCWPW2, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, NA NA NA NA NA NA NA NA NA LTS-028 MOBP, EIF1B-AS1, MYD88, NKTR, VILL, DYNC1LI1, SS18L2, PLCD1, CMTM6, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, LINC00693, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, VIPR1, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.45554277438963 167 0.0515472253551553 1.03461330851964 8874 0.520465660548802 4 2 2 -6.82487049953913 LTS-028 NA NA NA NA LTS-028 chr3 42956221 46623760 3667540 * c(KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, LIMD1, CCRL2, ZNF502) 0.443101934470403 73 0.0972200582494549 0.995708672664798 4222 0.253289617956064 4 2 2 -6.94148303262128 LTS-028 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.111 1 NA NA NA NA NA LTS-028 chr3 46623907 47059256 435350 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.454444029840468 26 0.0490884445120782 1.13964280461014 937 0.536363013938997 4 2 2 -6.77170170253726 LTS-028 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.892 1 NA NA NA NA NA LTS-028 chr3 47061216 56592843 9531628 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, NA NA NA NA NA NA NA NA NA LTS-028 RAD54L2, STAB1, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.454547003658235 164 0.0822594650754154 1.05027344608107 15344 0.220404926395107 4 2 2 -6.82446227302302 LTS-028 NA NA NA NA LTS-028 chr3 56592844 56762577 169734 * c(FAM208A, CCDC66, ARHGEF3) 0.436843177865109 15 0.0882908073735124 0.890196754335796 349 0.171720077935448 4 2 2 -6.8592581484676 LTS-028 chr3 56762578 59033091 2270514 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.44357640052941 69 0.0817629545280919 1.01635042997172 2720 0.238518229431305 4 2 2 -6.81484105242212 LTS-028 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.74 1 NA NA NA NA NA LTS-028 chr3 59035205 67459150 8423946 * c(LINC00994, MIR4272, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, SUCLG2, MAGI1, PSMD6) 0.458524474407542 22 0.103473944270319 1.10965300516933 2238 0.289680048373061 4 2 2 -6.79785952665483 LTS-028 chr3 67459151 67459185 35 * SUCLG2 NA 0 NA 1.092 1 NA NA NA NA NA LTS-028 chr3 67459186 73046544 5587359 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, SUCLG2, UBA3) 0.445117466307689 16 0.0482897073229206 0.987973862829842 1731 0.251755664229369 4 2 2 -7.11172336146317 LTS-028 chr3 73046545 73046577 33 * PPP4R2 NA 0 NA 1.879 1 NA NA NA NA NA LTS-028 chr3 73046578 73115786 69209 * c(PPP4R2, EBLN2) 0.451522506732781 7 0.0288947185815117 1.25698280130924 99 0.296988613327336 4 2 2 -6.80324707321079 LTS-028 chr3 73115787 73116716 930 * character(0) 0.036 1 NA 1.22938822169768 17 0.29942371119123 5 5 0 -5.76445439191162 LTS-028 chr3 73116717 75779403 2662687 * c(ZNF717, MIR1324, PDZRN3, CNTN3, FAM86DP) 0.309832776862856 44 0.104954606114305 1.29616520426528 450 0.438241975902819 6 4 2 -7.11647818921705 LTS-028 chr3 75779404 75779442 39 * ZNF717 0.394 1 NA 0.78 1 NA NA NA NA NA LTS-028 chr3 75779443 75790585 11143 * ZNF717 0.31443290486484 145 0.113735809185972 0.972582232192031 263 0.345127359059663 3 2 1 -6.76757156563902 LTS-028 chr3 75790586 75790607 22 * ZNF717 0.486 1 NA 0.969 1 NA NA NA NA NA LTS-028 chr3 75790608 77089575 1298968 * c(ZNF717, ROBO2) 0.422883818535711 5 0.0358915031727566 0.928946245820213 39 0.172519239475497 4 2 2 -7.43514316562944 LTS-028 chr3 77089576 89530956 12441381 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.441153785493618 47 0.0773169109435564 1.05406362928021 1615 0.338204277983564 4 2 2 -6.76567593662686 LTS-028 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.05995948092649 31 0.318451637083703 4 NA NA -5.76566596223753 LTS-028 chr3 93591838 93593119 1282 * PROS1 0.482 1 NA 0.929005105789803 25 0.175727089545124 3 3 0 -5.76481154810314 LTS-028 chr3 93593120 115439740 21846621 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, MIR4796, MIR4446, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, DRD3, ARL13B, DHFR2, GABRR3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, NA NA NA NA NA NA NA NA NA LTS-028 ZBTB11, MORC1, GPR15, LINC00636, EPHA6, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, PROS1, CLDND1, NIT2, BBX, PCNP, SENP7, CCDC191, KIAA1524, RPL24, NSUN3, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR568, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, C3orf52, QTRT2, NAA50, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.439203146533843 179 0.0801663717895662 1.02959288916925 9532 0.286766860462901 4 2 2 -7.05179968367124 LTS-028 NA NA NA NA LTS-028 chr3 115439741 115439839 99 * GAP43 NA 0 NA 1.728 1 NA NA NA NA NA LTS-028 chr3 115439840 118269774 2829935 * c(GAP43, TUSC7, LSAMP) 0.444971698591508 4 0.0173469497799085 1.15907264855728 140 0.255274096889308 4 2 2 -6.88037723798913 LTS-028 chr3 118269775 118381303 111529 * character(0) 0.321 1 NA 1.35691307824676 7 0.304325170703656 5 5 0 -5.7645583787985 LTS-028 chr3 118381304 122598293 4216990 * c(IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.393249237186219 104 0.078045786503108 1.25474109182007 4795 0.374489219699563 5 3 2 -6.81104541072712 LTS-028 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.557 1 NA NA NA NA NA LTS-028 chr3 122598385 141161766 18563382 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-028 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.387550532598139 241 0.0783736246104399 1.33074555582557 13563 0.297220353193185 5 3 2 -6.7525836770689 LTS-028 NA NA NA NA LTS-028 chr3 141161767 142839942 1678176 * c(LOC100289361, LOC100507389, GRK7, U2SURP, ZBTB38, GK5, PCOLCE2, PAQR9, ATP1B3, PLS1, XRN1, ATR, RASA2, TFDP2, TRPC1, CHST2, RNF7) 0.39619739477748 31 0.0805536620714309 1.22780911566845 2069 0.307055866962133 5 3 2 -6.81205384265645 LTS-028 chr3 142839943 183753930 40913988 * c(WWTR1-AS1, LOC100128164, TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, ABCC5-AS1, KCNAB1-AS2, KCNAB1-AS1, LINC01014, SLC9A9-AS1, LOC101243545, KCNMB2, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, DNAJC19, OTOL1, ERICH6, CP, CPA3, CPB1, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, NA NA NA NA NA NA NA NA NA LTS-028 AGTR1, ECT2, HTR3D, RPL22L1, AADACP1, C3orf58, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, NAALADL2, WWTR1, TIPARP, ARHGEF26, GHSR, GPR160, LAMP3, KCNMB3, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, CCDC39, LINC00880, LRRIQ4, SAMD7, AADACL2, GPR149, SOX2-OT, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, MIR15B, MIR16-2, TM4SF1, MBNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MLF1, MME, NDUFB5, CLDN11, P2RY1, NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, PLSCR1, P2RY13, GPR87, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, PRKCI, MYNN, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, PLSCR2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, GNB4, ZMAT3, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SIAH2, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SCARNA7, MIR551B, MIR569, TERC, SEC62, TM4SF4, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, ZIC4, HPS3, ACTRT3, GFM1, ACTL6A, B3GALNT1, TNFSF10, GMPS, USP13, KLHL6, SLC33A1, EGFEM1P, CHST2, TSC22D2, P2RY14) 0.395479113252934 260 0.0672724496133631 1.2848251289047 15730 0.356293225981081 5 3 2 -7.03451056032018 LTS-028 NA NA NA NA LTS-028 chr3 183753931 183754122 192 * HTR3D NA 0 NA 1.387 1 NA NA NA NA NA LTS-028 chr3 183754123 194080725 10326603 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, FAM131A, LRRC15, TMEM207, RTP1, CPN2, CRYGS, MB21D2, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, VPS8, LOC253573, UTS2B, FETUB, HTR3E, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, NA NA NA NA NA NA NA NA NA LTS-028 IL1RAP, KNG1, FLJ42393, LPP, OPA1, DNAJB11, POLR2H, TBCCD1, P3H2, ABCF3, MASP1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, SNORD66, THPO, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, VWA5B2, TMEM41A, CLDN1, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.40122484170611 174 0.0820886879388937 1.33282815522136 7383 0.672506174586481 5 3 2 -6.73325909172996 LTS-028 NA NA NA NA LTS-028 chr3 194080726 195306436 1225711 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, LRRC15, FAM43A, XXYLT1, ACAP2, GP5, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.394606991042907 20 0.100725930911036 1.23706597927316 993 0.260554595358429 5 3 2 -6.80048377156862 LTS-028 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.697 1 NA NA NA NA NA LTS-028 chr3 195345046 195476016 130971 * c(MUC20, MUC4, MIR570, SDHAP2) 0.331598605894822 22 0.0966038458359864 1.98998301929611 190 0.928927615517221 9 6 3 -6.73710832687455 LTS-028 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.158 1 NA NA NA NA NA LTS-028 chr3 195477782 197769410 2291629 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.368278719324716 80 0.090699844912153 1.23437771222773 3166 0.286584220160001 5 3 2 -6.91369742339117 LTS-028 chr3 197769411 197770512 1102 * LMLN NA 0 NA 1.31663148827669 25 0.229002816576565 5 NA NA -5.76441328396919 LTS-028 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.293 1 NA 0.825576525227527 11 0.209439902423757 3 3 0 -5.76441797421336 LTS-028 chr4 60304 266181 205878 * c(ZNF595, ZNF718, ZNF876P, ZNF732) 0.322565911078133 4 0.0731772961147559 0.725693913562932 120 0.150464154883354 3 2 1 -6.84891937207843 LTS-028 chr4 266182 266196 15 * ZNF732 NA 0 NA 1.164 1 NA NA NA NA NA LTS-028 chr4 266197 377427 111231 * c(ZNF732, ZNF141) 0.0101261107467371 5 0.00207364413533277 1.00390989167429 91 0.413319862122435 7 7 0 -6.90177407056751 LTS-028 chr4 377428 377833 406 * ZNF141 0 1 NA 0.975132373488014 9 0.769866673161298 4 4 0 -5.76441425157013 LTS-028 chr4 377834 509935 132102 * c(ZNF721, PIGG, ABCA11P) 0.0253475213084934 3 0.0128582010146573 0.944667751316474 176 0.258938226035859 3 3 0 -6.76483981846561 LTS-028 chr4 509936 514791 4856 * PIGG NA 0 NA 0.574 1 NA NA NA NA NA LTS-028 chr4 514792 1388583 873792 * c(LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, DGKQ, GAK, CRIPAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, MFSD7, TMEM175, CTBP1-AS2) 0.0303015360877457 46 0.019643735095506 0.587252299725325 1734 0.19254106512192 2 2 0 -6.80284831250581 LTS-028 chr4 1388584 1619865 231282 * CRIPAK 0.033 1 NA 0.495329407513899 53 0.179011754566171 2 2 0 -5.82616670978619 LTS-028 chr4 1619866 3447634 1827769 * c(MIR943, MIR4800, HTT-AS, MFSD10, TACC3, MXD4, ADD1, FAM53A, FGFR3, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, MSANTD1, POLN, LETM1, C4orf48, CFAP99, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, NOP14, FAM193A, TMEM129) 0.0415298997509974 73 0.0211928791780136 0.554150966338338 3533 0.151300717922139 2 2 0 -6.79207174813217 LTS-028 chr4 3447635 3487237 39603 * c(DOK7, HGFAC) 0.047 1 NA 0.630328082250073 35 0.125891022633991 2 2 0 -5.78627380552091 LTS-028 chr4 3487238 3517732 30495 * c(DOK7, LRPAP1) 0.0370371689688446 19 0.0140231637944872 0.673556894226141 189 0.257329025460335 2 2 0 -6.75511611143658 LTS-028 chr4 3517733 3589560 71828 * c(LINC00955, LRPAP1) 0.468 1 NA 0.589144269724027 37 0.178791026707806 2 2 0 -5.76825362912081 LTS-028 chr4 3589561 3591299 1739 * LINC00955 0.40355189216307 14 0.0390677067958399 0.741171148874659 35 0.294823371136121 5 3 2 -6.74098573585531 LTS-028 chr4 3591300 3591545 246 * LINC00955 0.279 1 NA 0.644692201821416 3 0.227703754909751 2 2 0 -5.7644685265986 LTS-028 chr4 3591546 4239539 647994 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP, TMEM128) 0.374058798714922 9 0.173260962455803 0.604996901806935 99 0.171764590115791 2 1 1 -6.90807792596218 LTS-028 chr4 4239540 4322670 83131 * c(ZBTB49, LYAR, TMEM128) 0.016 1 NA 0.585038556038557 133 0.172484262806571 2 2 0 -5.76802015853936 LTS-028 chr4 4322671 7762570 3439900 * c(LOC100129931, MIR4274, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, CRMP1, JAKMIP1, ZBTB49, EVC, MAN2B2, CCDC96, NSG1, LOC285484, MSX1, STX18, CYTL1, PPP2R2C, BLOC1S4, STK32B, TBC1D14, SORCS2, AFAP1, S100P, FLJ36777, WFS1, PSAPL1, GRPEL1, AFAP1-AS1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.0349606293173888 67 0.0151800590470854 0.557292166105702 2463 0.164312334815555 2 2 0 -6.73339864402015 LTS-028 chr4 7762571 7763047 477 * c(AFAP1, AFAP1-AS1) 0.067 1 NA 0.660805559316493 11 0.260119727677992 2 2 0 -5.76452954753187 LTS-028 chr4 7763048 36067987 28304940 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4275, MIR3138, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, CLNK, ARAP2, CPEB2, PACRGL, LINC01085, TRMT44, DHX15, ADGRA3, DRD5, TAPT1, TAPT1-AS1, SEL1L3, LCORL, BOD1L1, FBXL5, FAM184B, GPR78, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, RBPJ, KCNIP4-IT1, SMIM20, USP17L6P, NA NA NA NA NA NA NA NA NA LTS-028 USP17L9P, MIR218-1, CPEB2-AS1, PCDH7, LAP3, SEPSECS, SH3TC1, DCAF16, LGI2, TBC1D19, PI4K2B, SLC2A9, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, AFAP1, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, CPZ, ZNF518B, PROM1, CCKAR, LDB2, CCDC149, SLIT2, RAB28, HTRA3, CD38, WDR1, HS3ST1, FGFBP1) 0.0348211564556923 143 0.0399221812714523 0.578206944238598 6941 0.246358813946044 2 2 0 -7.05186085490759 LTS-028 NA NA NA NA LTS-028 chr4 36067988 40817991 4750004 * c(MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, PDS5A, UBE2K, APBB2, LOC344967, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, FAM114A1) 0.0336762614358188 39 0.024702029944942 0.532776581174403 3215 0.932828470257377 2 2 0 -6.7420756682623 LTS-028 chr4 40817992 40818090 99 * APBB2 NA 0 NA 0.574 1 NA NA NA NA NA LTS-028 chr4 40818091 42067284 1249194 * c(UCHL1-AS1, SLC30A9, LIMCH1, DCAF4L1, APBB2, TMEM33, UCHL1, PHOX2B) 0.0343531424600461 21 0.0292824504569188 0.616475570508943 829 0.196076972258091 2 2 0 -6.91769767541452 LTS-028 chr4 42067285 48588742 6521458 * c(ATP8A1, SLC30A9, CORIN, CNGA1, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK) 0.0364985370187139 70 0.0197787765041218 0.548165092890127 3166 0.162415463068605 2 2 0 -6.78772717314822 LTS-028 chr4 48588743 49064107 475365 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.527495577967662 261 0.119099817090066 2 NA NA -5.82930706471948 LTS-028 chr4 52709193 52779977 70785 * DCUN1D4 0.054 1 NA 0.60878394501601 81 0.133149746294432 2 2 0 -5.78215880270189 LTS-028 chr4 52779978 52883349 103372 * c(DCUN1D4, LRRC66) NA 0 NA 0.600188452282528 126 0.0943839520930249 2 NA NA -5.80027086910326 LTS-028 chr4 52883350 52963239 79890 * c(SPATA18, LRRC66, SGCB) NA 0 NA 0.92061120359607 228 0.249882393351341 3 NA NA -5.77506594478652 LTS-028 chr4 52963240 69363297 16400058 * c(FTLP10, EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, TMPRSS11B, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, IGFBP7, KDR, KIT, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, LOC550113, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, TMPRSS11GP, NA NA NA NA NA NA NA NA NA LTS-028 USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.0361062090986394 102 0.020523958375625 0.562273746034651 4588 0.181280758377962 2 2 0 -6.74823967771058 LTS-028 NA NA NA NA LTS-028 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.91 1 NA NA NA NA NA LTS-028 chr4 69402959 69512430 109472 * UGT2B17 0.0315344994722548 2 0.00636396103067893 1.1131665623261 45 0.342381830975036 2 2 0 -7.16302507530427 LTS-028 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.574 1 NA NA NA NA NA LTS-028 chr4 69512574 76891598 7379025 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CSN1S1, CSN2, CSN3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, AREG, PRR27, AMTN, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, UTP3, UGT2A2, OPRPN, CXCL6, NA NA NA NA NA NA NA NA NA LTS-028 CXCL5, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, CABS1, USO1, SLC4A4, CDKL2, MOB1B, ADAMTS3, G3BP2) 0.0410983390387389 81 0.0254220364697954 0.560281362329228 4418 0.172049628191363 2 2 0 -6.76866321980624 LTS-028 NA NA NA NA LTS-028 chr4 76891599 76892518 920 * SDAD1 NA 0 NA 0.735 1 NA NA NA NA NA LTS-028 chr4 76892519 77045940 153422 * c(CXCL10, ART3, CXCL9, NUP54, SDAD1, CXCL11) 0.0346003837312224 12 0.0187907133736564 0.795770170030753 295 0.290012722638259 2 2 0 -6.86747506418275 LTS-028 chr4 77045941 77051766 5826 * NUP54 NA 0 NA 0.439 1 NA NA NA NA NA LTS-028 chr4 77051767 90875631 13823865 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, FAM13A, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, PPM1K, RASGEF1B, TIGD2, DMP1, DSPP, FGF5, SEC31A, MMRN1, WDFY3, CNOT6L, C4orf22, NAP1L5, GK2, COQ2, FAM13A-AS1, GPRIN3, ANXA3, HNRNPD, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NA NA NA NA NA NA NA NA NA LTS-028 NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PKD2, NUDT9, NUP54, HERC6, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, HERC3, STBD1, CCNG2, ABCG2, SCARB2, HNRNPDL) 0.0400088798703439 132 0.0226736328608982 0.557376795215466 8299 0.31125397227424 2 2 0 -6.76230411483728 LTS-028 NA NA NA NA LTS-028 chr4 90875632 98109018 7233387 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.0376939398501447 44 0.024639161235415 0.62053065588668 1363 0.20589350692091 2 2 0 -7.70307973732124 LTS-028 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.536 1 NA NA NA NA NA LTS-028 chr4 98480011 106377182 7897172 * c(MIR3684, LOC100507053, LINC01216, TSPAN5, CENPE, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, EIF4E, METAP1, LOC256880, PPA2, DAPP1, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, TET2, BANK1, PPP3CA, BDH2, RAP1GDS1, SLC39A8, TACR3, UBE2D3, DNAJB14, CXXC4, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.0488916439233569 55 0.0584726187035192 0.55549631778683 3721 0.293765274284093 2 2 0 -6.76821572386519 LTS-028 chr4 106377183 106377231 49 * PPA2 0.03 1 NA 1.049 1 NA NA NA NA NA LTS-028 chr4 106377232 113479316 7102085 * c(GIMD1, SEC24B-AS1, ARHGEF38-IT1, SEC24B, RRH, CYP2U1, C4orf32, SGMS2, EGF, ENPEP, NPNT, PPA2, DKK2, RPL34-AS1, HADH, CFI, LRIT3, LEF1, PITX2, GAR1, ARHGEF38, MCUB, ZGRF1, AP1AR, INTS12, OSTC, RPL34, NEUROG2, LEF1-AS1, ETNPPL, ELOVL6, GSTCD, ALPK1, PLA2G12A, CASP6, COL25A1, PAPSS1, AIMP1, TIFA, TBCK) 0.0308456830016098 36 0.0297311231294696 0.576475673121741 3265 0.170933023660821 2 2 0 -6.88767447486477 LTS-028 chr4 113479317 114081490 602174 * c(MIR1243, ANK2, MIR302B, LARP7, ZGRF1) 0 1 NA 0.574138450019781 277 0.156524715722902 2 2 0 -5.77563118093312 LTS-028 chr4 114081491 122800987 8719497 * c(SNHG8, PP12613, MIR1973, PRDM5, TMEM155, TRAM1L1, SYNPO2, FABP2, ANK2, ANXA5, LINC01061, C4orf3, MAD2L1, MYOZ2, EXOSC9, USP53, BBS7, METTL14, CEP170P1, LOC645513, NDST4, SNORA24, MIR577, TRPC3, UGT8, NDNF, ARSJ, TNIP3, CAMK2D, QRFPR, PRSS12, PDE5A, CCNA2, NDST3, SEC24D) 0.0287094674771451 48 0.0198204260998633 0.582833309946461 3254 0.181587877389733 2 2 0 -7.06865724054462 LTS-028 chr4 122800988 123192383 391396 * c(TRPC3, KIAA1109) 0.043 1 NA 0.54680056767942 359 0.106544910974183 2 2 0 -5.77367262128044 LTS-028 chr4 123192384 123868470 676087 * c(NUDT6, ADAD1, SPATA5, BBS12, FGF2, IL2, IL21, CETN4P, KIAA1109) 0.0536781287559576 9 0.0215316304796249 0.56264048943246 632 0.16232903751668 2 2 0 -7.15368654154801 LTS-028 chr4 123868471 126428338 2559868 * c(SPRY1, SPATA5, LINC01091, ANKRD50, FAT4) 0.0279421341005043 8 0.00876580205767194 0.635364751280282 570 0.130297614924329 2 2 0 -8.31967409380261 LTS-028 chr4 128544436 144264722 15720287 * c(SCOC-AS1, LINC00499, PGRMC2, CLGN, PLK4, SCLT1, C4orf33, PABPC4L, MGAT4D, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, IL15, MGST2, NDUFC1, PCDH18, LARP1B, MAML3, RNF150, PCDH10, SCOC, SLC7A11-AS1, LINC00616, TNRC18P1, UCP1, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, USP38, MGARP, INPP4B) 0.0452293349662966 61 0.0189289150543979 0.55731586187825 3974 0.148621583241106 2 2 0 -6.90466279282561 LTS-028 chr4 144264723 144317039 52317 * GAB1 0.048 1 NA 0.340661916392599 3 0.329478375618188 1 1 0 -5.7693772203063 LTS-028 chr4 144317040 145035788 718749 * c(FREM3, GAB1, GYPA, GYPB, GYPE, GUSBP5, SMARCA5) 0.173490445159831 9 0.148913099192486 0.582079559201637 664 0.159343500299223 2 2 0 -7.24045888504634 LTS-028 chr4 145035789 145567471 531683 * c(GYPA, HHIP, HHIP-AS1) 0.039 1 NA 0.514863331136718 39 0.84626975564842 2 2 0 -5.76735714835858 LTS-028 chr4 145567472 169432673 23865202 * c(MIR3140, MIR3688-1, LINC01095, LINC01207, APELA, MIR4799, MIR3688-2, ANAPC10, MAB21L2, LSM6, ANXA10, KLHL2, CPE, CTSO, ZNF827, SH3D19, FAM218A, C4orf45, DCLK2, TRIM60, MMAA, RBM46, EDNRA, C4orf46, TIGD4, TMEM154, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, KIAA0922, TRIM2, ANP32C, GK3P, ARFIP1, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, LOC340017, PRSS48, TRIM61, SMAD1, NR3C2, NPY1R, NPY2R, NPY5R, NA NA NA NA NA NA NA NA NA LTS-028 SPOCK3, FAM198B, ASIC5, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, MARCH1, FBXW7, TMEM144, TMA16, DDX60, TMEM184C, PDGFC, FSTL5, FNIP2, RXFP1, ABCE1, RPS3A, MSMO1, SFRP2, HHIP, C4orf51, MIR578, TDO2, TLL1, TLR2, FAM160A1, ARHGAP10, MAP9, TTC29, MND1, SLC10A7, TKTL2, FHDC1, SNORD73A, PRMT9, DDX60L, LRAT, NAF1, RAPGEF2, LRBA) 0.0373702530885317 132 0.0243542414587242 0.566835181048522 8855 0.174081077592061 2 2 0 -6.84048409333531 LTS-028 NA NA NA NA LTS-028 chr4 169432674 169432841 168 * PALLD 0.053 1 NA 0.390319203728285 5 0.19445822173413 1 1 0 -5.76459930440074 LTS-028 chr4 169432842 169909593 476752 * c(PALLD, CBR4) 0.0955706566309865 9 0.187741178221508 0.551224147948223 229 0.161685201375478 2 2 0 -6.79668724773181 LTS-028 chr4 169909594 170315166 405573 * c(NEK1, SH3RF1, CBR4) 0.036 1 NA 0.608198344301677 231 0.214899155721194 2 2 0 -5.80245420889277 LTS-028 chr4 170315167 185309071 14993905 * c(CLDN24, MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, ING2, IRF2, LOC389247, FAM92A1P2, GALNTL6, NEK1, AADAT, GALNT7, CLDN22, HPF1, NEIL3, CDKN2AIP, TENM3, STOX2, SPCS3, TRAPPC11, LINC00290, LOC728175, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, SAP30, LOC90768, HAND2, MFAP3L) 0.0342695050690381 54 0.0238748191222509 0.56627950177538 3502 0.179325606242532 2 2 0 -6.78663773649427 LTS-028 chr4 185309072 185309113 42 * IRF2 NA 0 NA 0.494 1 NA NA NA NA NA LTS-028 chr4 185309114 185709900 400787 * c(PRIMPOL, ACSL1, IRF2, CENPU, CASP3) 0.0356279389778139 2 0.00848528137423857 0.489091537913567 413 0.113919579667657 2 2 0 -7.04591000503104 LTS-028 chr4 185709901 185724527 14627 * c(ACSL1, SLED1) NA 0 NA 0.536 1 NA NA NA NA NA LTS-028 chr4 185724528 187549898 1825371 * c(MIR3945, LINC01093, F11, ACSL1, FAT1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, SLC25A4, ANKRD37, KLKB1, HELT, C4orf47, MTNR1A, UFSP2, LRP2BP, CFAP97, FLJ38576, TLR3, MIR3945HG, SNX25, SORBS2) 0.0394441632287711 37 0.0158177495618435 0.579576920446457 1762 0.176033521831524 2 2 0 -6.82773284937789 LTS-028 chr4 187549899 187554804 4906 * FAT1 NA 0 NA 1.02 1 NA NA NA NA NA LTS-028 chr4 187554805 187631037 76233 * FAT1 0.018491521963053 3 0.0101488915650922 0.888077365216918 102 0.22216053112991 4 4 0 -6.76827198256137 LTS-028 chr4 188923866 189064952 141087 * c(ZFP42, TRIML2, TRIML1) 0.0443752097932456 11 0.0285341900182921 0.56659311298146 129 0.212759608007297 2 2 0 -6.79724833132361 LTS-028 chr4 189064953 189661346 596394 * c(TRIML1, LINC01060) 0.353 1 NA 0.605465902901617 43 0.201594257705314 2 2 0 -5.821264057959 LTS-028 chr4 189661347 190946037 1284691 * FRG1 0.239048905373065 9 0.146149276806665 0.6251463158993 134 0.229050032660038 2 1 1 -7.89606060363074 LTS-028 chr4 190946038 190981567 35530 * character(0) NA 0 NA 0.749166970249372 21 0.628126810824208 3 NA NA -5.76482998116358 LTS-028 chr5 140347 163020 22674 * PLEKHG4B 0.313 1 NA 0.744623597254592 65 0.196423070427467 3 3 0 -5.76753973859995 LTS-028 chr5 163021 13823468 13660448 * c(SNORD123, PDCD6, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4636, MIR4456, MIR4635, LOC100996325, MARCH6, SLC12A7, ADCY2, PAPD7, TPPP, EXOC3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, PLEKHG4B, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, ICE1, LINC01018, PP7080, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, LRRC14B, FLJ33360, LINC01194, NA NA NA NA NA NA NA NA NA LTS-028 LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, NSUN2, CEP72, AHRR, SDHA, MRPL36, ANKRD33B, SLC6A3, SLC9A3, BRD9, SRD5A1, TERT, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, SEMA5A, TRIP13) 0.329028103179116 211 0.0788491685366513 0.8446374506101 5246 0.242380392007639 3 2 1 -6.88491640195006 LTS-028 NA NA NA NA LTS-028 chr5 13823469 13824268 800 * DNAH5 NA 0 NA 1.187 1 NA NA NA NA NA LTS-028 chr5 13824269 14491081 666813 * c(DNAH5, TRIO) 0.251128696125696 21 0.0397960873884427 1.0970553102681 526 0.275416839941458 4 3 1 -6.75849914691303 LTS-028 chr5 14491082 14492609 1528 * TRIO NA 0 NA 0.607 1 NA NA NA NA NA LTS-028 chr5 14492610 37048755 22556146 * c(LOC100130744, CDH6, MIR4279, MIR4637, CDH9, CDH10, CDH12, CDH18, BASP1, SUB1, C1QTNF3, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, FBXL7, AMACR, NIPBL, RAI14, LOC285696, DROSHA, LOC340107, LOC340113, IL7R, LOC401177, MARCH11, MYO10, NPR3, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, BRIX1, C5orf22, ANKH, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, SLC1A3, NA NA NA NA NA NA NA NA NA LTS-028 TARS, MIR580, TRIO, GUSBP1, LSP1P3, SPEF2, ADAMTS12, OTULIN, ZNF622, LMBRD2) 0.336662210104216 102 0.058811503575616 0.833229279335546 6186 0.196649183784134 3 2 1 -6.85014049084593 LTS-028 NA NA NA NA LTS-028 chr5 37048756 37049224 469 * NIPBL NA 0 NA 0.785 1 NA NA NA NA NA LTS-028 chr5 37049225 44304435 7255211 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MROH2B, EGFLAM, LOC153684, DAB2, NIM1K, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C5orf42, C6, C7, C9, ZNF131, CARD6, OSMR, NUP155) 0.326690491758579 39 0.0662665557446319 0.788987113746624 4379 0.3038770563078 3 2 1 -6.8230683220701 LTS-028 chr5 44304436 45696278 1391843 * c(MRPS30, FGF10, HCN1) NA 0 NA 0.871850903647951 193 0.210081742459169 3 NA NA -5.83976045180283 LTS-028 chr5 49692017 49694583 2567 * EMB 0.424 1 NA 0.750380045660506 47 0.226252742354113 3 3 0 -5.76463534875084 LTS-028 chr5 49694584 55204187 5509604 * c(MIR449C, MIR5687, CCNO, FST, ESM1, SNX18, IL31RA, EMB, SLC38A9, CDC20B, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ISL1, ITGA1, ITGA2, RNF138P1, MOCS2, NDUFS4, GPX8, PELO, DHX29, DDX4, ARL15, MIR449A, LOC642366, MIR449B, MIR581, PARP8, PLPP1, HSPB3) 0.325072027408708 86 0.0532831388570241 0.779710180492415 2373 0.222531221131464 3 2 1 -6.93817554628128 LTS-028 chr5 55204188 55204723 536 * IL31RA 0.254 1 NA 0.760943092706071 11 0.367174097917893 3 3 0 -5.76442266950065 LTS-028 chr5 55204724 55299520 94797 * c(IL31RA, IL6ST, FLJ31104) 0.388 1 NA 0.773676957501144 284 0.174264736293186 3 3 0 -5.77026978828699 LTS-028 chr5 55299521 55395497 95977 * character(0) NA 0 NA 0.451 1 NA NA NA NA NA LTS-028 chr5 55395498 55852100 456603 * ANKRD55 0.0386360389693211 3 0.003 0.547766863425466 134 0.155988247300642 2 2 0 -7.50308427307061 LTS-028 chr5 55852101 56111386 259286 * MAP3K1 NA 0 NA 0.845 1 NA NA NA NA NA LTS-028 chr5 56111387 56778103 666717 * c(SETD9, MIER3, ACTBL2, MAP3K1, GPBP1) 0.314872660341982 5 0.0321947200640105 0.793773507831976 507 0.198759714171057 3 2 1 -7.11688616468954 LTS-028 chr5 56778104 57754004 975901 * c(PLK2, ACTBL2) 0.348 1 NA 0.806954027302263 75 0.144932882882183 3 3 0 -5.76975168480915 LTS-028 chr5 57754005 58571915 817911 * c(PLK2, RAB3C, GAPT, PDE4D) 0.343174576351147 13 0.0556543821851456 0.756069038375876 567 0.199988339864265 3 2 1 -6.80942755957629 LTS-028 chr5 58571916 59726113 1154198 * PDE4D NA 0 NA 0.811352976633971 85 0.177954128102395 3 NA NA -5.76595732757204 LTS-028 chr5 59726114 59892716 166603 * c(PART1, PDE4D) NA 0 NA 0.553 1 NA NA NA NA NA LTS-028 chr5 59892717 59899413 6697 * DEPDC1B 0.03 1 NA 0.536698622082372 27 0.152699255656544 2 2 0 -5.76468338161748 LTS-028 chr5 59899414 60394697 495284 * c(ERCC8, DEPDC1B, ELOVL7, NDUFAF2) 0.0247293443573277 3 0.0427122152707318 0.557548832757314 243 0.192488946410848 2 2 0 -6.7676709260881 LTS-028 chr5 60394698 60394706 9 * NDUFAF2 0.346 1 NA 1.164 1 NA NA NA NA NA LTS-028 chr5 60394707 61669503 1274797 * c(C5orf64, KIF2A, ZSWIM6, SMIM15, NDUFAF2) 0.289488530543445 5 0.0774680579335767 0.812447708056438 349 0.203756605996884 3 2 1 -6.98933835121092 LTS-028 chr5 61669504 61676902 7399 * KIF2A 0.262 1 NA 0.809499540510898 9 0.235323595171509 3 3 0 -5.76441931064836 LTS-028 chr5 61676903 69373289 7696387 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, DIMT1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, TRAPPC13, SERF1A, CCNB1, MRPS36) 0.322168799824152 72 0.0643031929687639 0.79812008353432 3643 0.281635518811304 3 2 1 -6.8204805631168 LTS-028 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.214 1 NA NA NA NA NA LTS-028 chr5 69717474 70307196 589723 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.50068901800811 40 0.271803538353603 2 NA NA -5.82106331608648 LTS-028 chr5 70307197 70307464 268 * c(GUSBP9, NAIP) 0.191 1 NA 0.848754776566141 3 0.365056616613551 3 3 0 -5.76441174975803 LTS-028 chr5 70307465 70308251 787 * c(GUSBP9, NAIP) 0.152 1 NA 0.981947928036557 7 0.249207219187643 4 4 0 -5.76447615408406 LTS-028 chr5 70308252 70388996 80745 * c(GUSBP9, GTF2H2, NAIP, LOC647859) NA 0 NA 0.896543974775384 43 0.373228339135706 3 NA NA -5.76731613608184 LTS-028 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 0.485 1 NA NA NA NA NA LTS-028 chr5 70751404 79351852 8600449 * c(NCRUPAR, MIR4804, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, JMY, TMEM171, TMEM174, POC5, CRHBP, PAPD4, ZNF366, S100Z, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, BHMT2, ANKRD31, FAM169A, DMGDH, HEXB, HMGCR, MTX3, TNPO1, ARSB, MAP1B, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, BHMT, MCCC2, ARHGEF28, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, PTCD2, UTP15, ZBED3, GFM2, ENC1, AP3B1, NA NA NA NA NA NA NA NA NA LTS-028 PDE8B, HOMER1, SCAMP1, CARTPT) 0.0370046074553487 126 0.0200971497623775 0.552551441399633 5886 0.351257844521408 2 2 0 -6.74368077485739 LTS-028 NA NA NA NA LTS-028 chr5 79351853 79351859 7 * THBS4 0.375 1 NA 0.199888695866925 3 0.208976075185654 1 1 0 -5.76442345711644 LTS-028 chr5 79351860 79950745 598886 * c(MTRNR2L2, FAM151B, DHFR, SERINC5, ANKRD34B, CRSP8P, MSH3, LOC644936, THBS4, SPZ1, ZFYVE16) 0.0801917757735339 16 0.136679049235792 0.560306046573057 607 0.244680684608357 2 2 0 -6.79792699711438 LTS-028 chr5 79950746 79968258 17513 * c(DHFR, MSH3) 0.065 1 NA 0.54186037737378 21 0.283691583036428 2 2 0 -5.76452961426853 LTS-028 chr5 79968259 87536806 7568548 * c(CKMT2-AS1, MIR4280, MIR3607, MIR3977, EDIL3, CKMT2, ACOT12, COX7C, HAPLN1, VCAN, TMEM167A, TMEM161B, SSBP2, RNU5E-1, NBPF22P, MSH3, RASA1, RASGRF2, RPS23, SCARNA18, XRCC4, ATG10, ZCCHC9, CCNH, ATP6AP1L) 0.0323159013627276 28 0.0262862498507667 0.560804738611826 2039 0.146548254521812 2 2 0 -6.74293936211252 LTS-028 chr5 87536807 87564418 27612 * TMEM161B NA 0 NA 0.648 1 NA NA NA NA NA LTS-028 chr5 87564419 93722043 6157625 * c(ARRDC3-AS1, MIR2277, MIR3660, TMEM161B-AS1, POLR3G, CETN3, LYSMD3, POU5F2, MBLAC2, TMEM161B, KIAA0825, MIR9-2, MEF2C, NR2F1-AS1, ARRDC3, LINC00461, NR2F1, FAM172A, ADGRV1) 0.0339051774058639 23 0.020836650592289 0.58869845337685 1571 0.178355546880931 2 2 0 -7.04060193635203 LTS-028 chr5 93722044 93722050 7 * KIAA0825 NA 0 NA 0.073 1 NA NA NA NA NA LTS-028 chr5 93722051 96367879 2645829 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.0312615887702443 42 0.0190875025242497 0.520081107711112 2288 0.142640097025187 2 2 0 -7.12847764891271 LTS-028 chr5 96367880 96371242 3363 * character(0) 0.056 1 NA 0.779734396681148 69 0.227439970814181 3 3 0 -5.764500587586 LTS-028 chr5 96371243 126705624 30334382 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, SNX24, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, NA NA NA NA NA NA NA NA NA LTS-028 PAM, TMED7, PRR16, COMMD10, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, ZNF608, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, GRAMD3, SNX2, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, C5orf30, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, PJA2) 0.0445190663967598 178 0.04368462405089 0.560918897673091 8451 0.221956462277925 2 2 0 -6.76814902307849 LTS-028 NA NA NA NA LTS-028 chr5 126705625 129073226 2367602 * c(MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.0422363518973377 12 0.0292205562762058 0.608120936992095 1300 0.18140639881917 2 2 0 -7.06688587640829 LTS-028 chr5 129073227 132240161 3166935 * c(KIAA1024L, MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, ADAMTS19, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, RAPGEF6, LOC553103, CDC42SE2, CCNI2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.026225999612545 33 0.0181711142734669 0.533727862066063 2690 0.149802689334402 2 2 0 -7.03977175345975 LTS-028 chr5 132240162 132261839 21678 * AFF4 NA 0 NA 0.643 1 NA NA NA NA NA LTS-028 chr5 132261840 132387807 125968 * c(AFF4, HSPA4, ZCCHC10) 0.0247464156326968 4 0.0144077525427574 0.777564899707134 109 0.273097522966849 3 3 0 -6.73768158430094 LTS-028 chr5 132387808 132387888 81 * HSPA4 NA 0 NA 0.462 1 NA NA NA NA NA LTS-028 chr5 132387889 134331918 1944030 * c(MIR1289-2, MIR3661, MIR4461, SEC24A, C5orf24, FSTL4, JADE2, HSPA4, CATSPER3, SAR1B, CDKL3, PPP2CA, C5orf15, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.0333852519733732 15 0.0261364551099472 0.536342941487678 1801 0.212891986530561 2 2 0 -6.77726290580973 LTS-028 chr5 134331919 134331921 3 * CATSPER3 0.086 1 NA 1.762 1 NA NA NA NA NA LTS-028 chr5 134331922 136476410 2144489 * c(VTRNA2-1, C5orf66, DCANP1, SLC25A48, FBXL21, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, CXCL14, H2AFY, SMAD5-AS1) 0.0379533034486385 33 0.0172609210049578 0.599563614393024 1108 0.529086071646922 2 2 0 -6.77336893566072 LTS-028 chr5 136476411 136602594 126184 * SPOCK1 NA 0 NA 0.888 1 NA NA NA NA NA LTS-028 chr5 136602595 138730407 2127813 * c(MIR874, KIF20A, BRD8, HNRNPA0, CTNNA1, EGR1, ETF1, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, PROB1, NPY6R, MZB1, PAIP2, FAM13B, FAM53C, REEP2, KDM3B, SIL1, SPOCK1, SNHG4, WNT8A, NME5, CDC23, MYOT, MATR3, CDC25C, SLC23A1) 0.0279255744673823 21 0.0198321528260117 0.80077737417656 2430 0.192218305795731 3 3 0 -6.77350898718351 LTS-028 chr5 138730408 138732579 2172 * c(SPATA24, PROB1) 0.016 1 NA 0.68100932445704 17 0.19828108761524 3 3 0 -5.76552603994077 LTS-028 chr5 138732580 140086191 1353612 * c(SRA1, LINC01024, APBB3, SLC35A4, ZMAT2, HBEGF, SPATA24, DNAJC18, HARS2, HARS, TMEM173, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, CXXC5, PFDN1, WDR55, ANKHD1, TMCO6, PURA, ECSCR, UBE2D2, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2) 0.0228516794125436 33 0.0124405404004225 0.834496648227755 1963 0.190344819757324 3 3 0 -6.74606536359339 LTS-028 chr5 140086192 140168151 81960 * c(ZMAT2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1) 0.02 1 NA 0.811426735745236 31 0.172236821210347 3 3 0 -5.76452492144736 LTS-028 chr5 140168152 140553623 385472 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.0244432558850519 34 0.0138965172158652 0.804767076181851 1111 0.26007419413791 3 3 0 -6.73485173627252 LTS-028 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.234 1 NA NA NA NA NA LTS-028 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.086 1 NA 0.261237958258468 68 0.0882510225226597 1 1 0 -5.77025085527739 LTS-028 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.467 1 NA NA NA NA NA LTS-028 chr5 140559822 141334921 775100 * c(LOC100505658, DIAPH1, PCDHGA12, RELL2, PCDH1, PCDHGC3, PCDH12, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, ARAP3, TAF7, LOC729080, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, FCHSD1, PCDHGA8, KIAA0141) 0.0401888923533419 39 0.0307228260058669 0.821770620200911 2621 0.201435062138333 3 3 0 -6.89714412767405 LTS-028 chr5 141334922 141335241 320 * PCDH12 0.038 1 NA 0.748843052294477 7 0.319112235816208 3 3 0 -5.76442488444778 LTS-028 chr5 141335242 141387336 52095 * c(GNPDA1, PCDH12, RNF14) 0.0553224777035834 9 0.11704142191739 0.768516460961617 222 0.218987459455562 3 3 0 -6.77849861639839 LTS-028 chr5 141387337 141690524 303188 * c(GNPDA1, NDFIP1, SPRY4) 0.029 1 NA 0.853172918652216 89 0.29481423056116 3 3 0 -5.76807299913633 LTS-028 chr5 141690525 167913510 26222986 * c(C5orf52, MIR3142, MIR3141, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, SLU7, FAXDC2, FAM114A2, TCERG1, SPINK5, SOX30, SYNPO, PWWP2A, C1QTNF2, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, SLC36A2, SPINK13, JAKMIP2-AS1, PPP1R2P3, FAM71B, PRELID2, SH3RF2, PLAC8L1, RNF145, ADRB2, DPYSL3, SLC26A2, EBF1, STK32A, SLC36A1, FABP6, NA NA NA NA NA NA NA NA NA LTS-028 FAT2, FGF1, ABLIM3, HMGXB3, ARHGAP26, ATP10B, WWC1, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, GEMIN5, CCDC69, HAVCR1, CYFIP2, IL17B, GLRA1, MAT2B, GM2A, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, ANXA6, HMMR, NDST1, HTR4, ARSI, IRGM, NIPAL4, IL12B, ITK, SAP30L-AS1, C5orf46, ARHGEF37, SPINK6, MIR143, MIR146A, SPINK14, FNDC9, MFAP3, ATOX1, DCTN4, PDE6A, LARS, PDGFRB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RBM27, POU4F3, THG1L, PPP2R2B, GALNT10, RBM22, NMUR2, TENM2, KCTD16, HMHB1, RARS, RPS14, ZBED8, GRXCR2, SPINK9, SGCD, SLC6A7, SPARC, SPINK1, TCOF1, TTC1, CARMN, PCYOX1L, CCNJL, SH3TC2, SAP30L, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SPINK7, HAVCR2, SMIM3, ADAM19, CCNG1, TIMD4, ZNF300, MYOZ3, PTTG1, CNOT8, HAND1, MED7, CLINT1, CD74, JAKMIP2) 0.0230500456565239 246 0.0147111066331077 0.81694665069941 13832 0.363745043087533 3 3 0 -6.73536087297808 LTS-028 NA NA NA NA LTS-028 chr5 167913511 167919726 6216 * RARS 0.037 1 NA 0.608384336546494 7 0.250839068119857 2 2 0 -5.76484381982968 LTS-028 chr5 167919727 167980525 60799 * c(FBLL1, RARS) 0.122125428887916 9 0.198581217641548 0.776968615670104 191 0.328150815608485 3 3 0 -6.87722803550045 LTS-028 chr5 167980526 168090532 110007 * c(MIR103B1, MIR103A1, SLIT3, PANK3) 0.018 1 NA 0.841065812876691 153 0.255684799208454 3 3 0 -5.76517657990001 LTS-028 chr5 168090533 174955584 6865052 * c(FAM196B, LOC100268168, MIR3912, MIR4634, MIR378E, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, KCNMB1, LCP2, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, CPEB4, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.0276536465077538 69 0.0152261441153245 0.810921252247774 3574 0.232030787563071 3 3 0 -6.77520262987881 LTS-028 chr5 174955585 174955794 210 * SFXN1 0.1 1 NA 0.671546097556095 6 0.312046577719844 2 2 0 -5.76445388799575 LTS-028 chr5 174955795 175386657 430863 * c(CPLX2, HRH2, THOC3) 0.0297513070708059 6 0.0095655632348545 0.823305667866398 217 0.203521190071176 3 3 0 -6.94907976111066 LTS-028 chr5 175386658 175387489 832 * THOC3 NA 0 NA 0.28775463635083 40 0.255894188870001 1 NA NA -5.76442093595245 LTS-028 chr5 175387490 175476829 89340 * THOC3 NA 0 NA 0.462313017290473 58 0.351896935789483 2 NA NA -5.77983606896594 LTS-028 chr5 175476830 175477584 755 * character(0) NA 0 NA 0.164899345720066 51 0.198742487834354 1 NA NA -5.7684545841628 LTS-028 chr5 175477585 175477597 13 * character(0) NA 0 NA 0.013 1 NA NA NA NA NA LTS-028 chr5 175477598 175530214 52617 * FAM153B 0.409368281541373 2 0.283549819255806 0.555996935648892 36 0.352673786947655 2 1 1 -6.74117008979326 LTS-028 chr5 175530215 175540963 10749 * FAM153B NA 0 NA 0.654805446395485 7 0.052837576816216 2 NA NA -5.82230168469521 LTS-028 chr5 175540964 175541084 121 * FAM153B NA 0 NA 1.181 1 NA NA NA NA NA LTS-028 chr5 175541085 175717216 176132 * c(LOC100507387, FAM153B, SIMC1, LOC643201) 0.017 1 NA 0.839479314398331 21 0.198849344743104 3 3 0 -5.76617022639465 LTS-028 chr5 175717217 176314459 597243 * c(MIR4281, GPRIN1, CLTB, HIGD2A, RNF44, FAF2, EIF4E1B, TSPAN17, ARL10, HK3, SIMC1, NOP16, CDHR2, KIAA1191, SNCB, UNC5A) 0.023962288681258 15 0.0101338659007922 0.811529490430744 1243 0.208785044152507 3 3 0 -6.73359785045639 LTS-028 chr5 176314460 176314639 180 * HK3 0.014 1 NA 0.540021160350267 3 0.492510236780245 2 2 0 -5.76441063606565 LTS-028 chr5 176314640 177210850 896211 * c(RGS14, LMAN2, B4GALT7, DBN1, LOC202181, F12, FGFR4, ZNF346, PRELID1, FAM153A, GRK6, HK3, PRR7-AS1, PFN3, DDX41, UIMC1, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.0252316662810911 5 0.00697853852894716 0.80264867948842 1876 0.18838491316497 3 3 0 -6.7600610564467 LTS-028 chr5 177210851 177220301 9451 * character(0) NA 0 NA 1.756 1 NA NA NA NA NA LTS-028 chr5 177220302 177311192 90891 * LOC728554 0.468 1 NA 1.10904288731219 90 0.427302281266471 4 4 0 -5.76465225100135 LTS-028 chr5 177311193 177344036 32844 * LOC728554 NA 0 NA 0.59 1 NA NA NA NA NA LTS-028 chr5 177344037 177683377 339341 * c(N4BP3, HNRNPAB, NHP2, PROP1, GMCL1P1, RMND5B, FAM153C, LOC728554, PHYKPL, COL23A1) 0.041283358845159 3 0.0251197133741609 0.832738488755362 531 0.198170787406763 3 3 0 -7.00873649981518 LTS-028 chr5 177683378 177686815 3438 * COL23A1 0 1 NA 0.822502109925823 19 0.250064050274657 3 3 0 -5.76441103857991 LTS-028 chr5 177686816 179050188 1363373 * c(ZNF354B, ZNF454, GRM6, ZNF354C, HNRNPH1, ZNF879, CLK4, ZNF354A, AACSP1, ZFP2, RUFY1, COL23A1, ADAMTS2) 0.0248420553701017 28 0.0144692704847131 0.798513915574525 1196 0.22522144934738 3 3 0 -6.74507662635379 LTS-028 chr5 179050189 179050918 730 * HNRNPH1 0.023 1 NA 0.85572178067525 15 0.191297250621221 3 3 0 -5.76443415564962 LTS-028 chr5 179050919 179287585 236667 * c(MIR1229, MGAT4B, C5orf60, HNRNPH1, LTC4S, C5orf45, CBY3, CANX, SQSTM1, MAML1) 0.0321229778388569 9 0.156770532945449 0.800692975480127 631 0.186936754686742 3 3 0 -6.73657803466607 LTS-028 chr5 179287586 179287597 12 * character(0) 0.008 1 NA 1.09040531874009 2 0.717006276123159 4 4 0 -5.7644101363565 LTS-028 chr5 179287598 180375393 1087796 * c(HEIH, OR2Y1, TBC1D9B, FLT4, RASGEF1C, MGAT1, MIR340, RNF130, MAPK9, CNOT6, ZFP62, LINC00847, BTNL8, SCGB3A1, GFPT2) 0.0248525759743047 17 0.00987979221024648 0.810558510486107 1211 0.211383348307891 3 3 0 -6.73977683285967 LTS-028 chr5 180375394 180429824 54431 * c(BTNL3, BTNL8) NA 0 NA 0.0589343988957716 65 0.0862215950997107 0 NA NA -6.42581991845642 LTS-028 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.9 1 NA NA NA NA NA LTS-028 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.0408370657404486 10 0.0196143371598997 0.824692746629445 512 0.197821049614598 3 3 0 -7.14983575414758 LTS-028 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.884384095923709 21 0.304768983548742 3 NA NA -5.76444522382193 LTS-028 chr6 203389 311938 108550 * DUSP22 0.155 1 NA 0.757953780579286 25 0.221213825667987 3 3 0 -5.77218754769952 LTS-028 chr6 311939 2994379 2682441 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, IRF4, LINC01011, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, FOXQ1) 0.343381914965199 33 0.0769295353495061 0.769465531808187 1123 0.251972096969269 3 2 1 -6.82768225917162 LTS-028 chr6 2994380 3006693 12314 * NQO2 NA 0 NA 0.869 1 NA NA NA NA NA LTS-028 chr6 3006694 27215625 24208932 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, NA NA NA NA NA NA NA NA NA LTS-028 SMIM13, SYCP2L, LINC00518, PXDC1, FAM217A, SIRT5, RNF144B, HIST1H2BA, FAM50B, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIVEP1, ID4, TUBB2B, C6orf52, KAAG1, JARID2, NHLRC1, GUSBP2, HIST1H2APS1, PSMG4, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, ACOT13, PRL, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, ALDH5A1, ZNF322, TXNDC5, C6orf62, TMEM14B, HIST1H4I, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, RIOK1, DTNBP1, CMAHP, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, CDYL, LY86, EEF1E1, FAM65B, KIAA0319, NUP153) 0.33981906132245 232 0.0612769474553538 0.809267653538233 11462 0.274175735217741 3 2 1 -6.75653271461333 LTS-028 NA NA NA NA LTS-028 chr6 27215626 27216699 1074 * PRSS16 0.326 1 NA 0.99690139533154 9 0.351537693569267 4 4 0 -5.76444193441798 LTS-028 chr6 27216700 31130760 3914061 * c(ZSCAN16-AS1, LOC100131289, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZKSCAN3, ZSCAN16, OR2B2, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, PGBD1, POM121L2, ZSCAN12) 0.306159687075534 237 0.0612959485297151 0.838731443902898 5868 0.799423094086044 3 2 1 -6.92443199206014 LTS-028 chr6 31130761 31170608 39848 * character(0) 0.414 1 NA 0.884961789869598 85 0.231570458631762 3 3 0 -5.76715129172575 LTS-028 chr6 31170609 31238914 68306 * character(0) 0.375874761683861 25 0.0832340675444856 1.20948661477529 83 17.4357054943616 8 5 3 -6.73310270150583 LTS-028 chr6 31238915 31238930 16 * character(0) 0.414 1 NA 0.539 1 NA NA NA NA NA LTS-028 chr6 31238931 31382964 144034 * character(0) 0.374251910682162 53 0.0878861291565012 0.635083454781882 153 0.298793132881781 3 2 1 -6.87858808150121 LTS-028 chr6 31382965 31431160 48196 * character(0) NA 0 NA 0.690593829822944 4 0.0880392904711678 3 NA NA -5.86980398055417 LTS-028 chr6 31431161 31431813 653 * character(0) 0.231 1 NA 0.871611881615445 11 0.159624787320995 3 3 0 -5.76447151384821 LTS-028 chr6 31431814 31962304 530491 * character(0) 0.336601956506424 49 0.0504211093224467 0.829412037548283 2857 0.175933155470644 3 2 1 -6.73975597287154 LTS-028 chr6 31962305 31979003 16699 * character(0) NA 0 NA 0.478563379679283 97 0.218437067773122 2 NA NA -5.76941622339964 LTS-028 chr6 31979004 31979012 9 * character(0) NA 0 NA 0.875 1 NA NA NA NA NA LTS-028 chr6 31979013 32427927 448915 * character(0) 0.340260631612454 98 0.081565059499772 0.854936893314009 1595 0.215309015763506 3 2 1 -6.74427983617092 LTS-028 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 0.066 1 NA NA NA NA NA LTS-028 chr6 32485401 32546447 61047 * HLA-DRB5 0.280714939675382 17 0.154489267664551 0.526954830507898 50 0.470596104826157 4 3 1 -6.8283132719445 LTS-028 chr6 32546448 32557617 11170 * HLA-DRB5 0.337611639058936 48 0.108973154918575 0.90150509778197 99 0.501099227691062 3 2 1 -6.73390418866819 LTS-028 chr6 32557618 32605164 47547 * character(0) 0.206 1 NA 1.11872189366415 3 0.65804584440093 4 4 0 -5.7645011132505 LTS-028 chr6 32605165 32627784 22620 * HLA-DQA1 0.149984532517285 42 0.0872953821220653 1.173398418433 101 0.771433806378592 7 6 1 -6.737844848053 LTS-028 chr6 32627785 32627906 122 * character(0) 0.267 1 NA 0.927813003292952 3 0.395558255296655 3 3 0 -5.76441746773438 LTS-028 chr6 32627907 32724587 96681 * character(0) 0.299623172674728 54 0.087506918963742 0.944117723153192 134 0.321838839541841 4 3 1 -6.86898021983703 LTS-028 chr6 32724588 33035512 310925 * character(0) 0.347812513010638 39 0.0927015439370515 0.778263054468155 739 0.684751257540429 3 2 1 -6.73714712539924 LTS-028 chr6 33035513 33054760 19248 * character(0) NA 0 NA 1.81222047070194 122 18.7769987821694 7 NA NA -5.76441015418678 LTS-028 chr6 33054761 35745333 2690573 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, ITPR3, CLPSL2, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.345975880791188 14 0.0525930363501431 0.835204973333545 4204 0.505526459210203 3 2 1 -6.74079907152313 LTS-028 chr6 35745334 35765131 19798 * c(CLPS, CLPSL1, CLPSL2) 0.322970544343134 2 0.0106066017177982 0.554518047236541 59 0.119395239692589 3 2 1 -8.24006453492312 LTS-028 chr6 35765132 35773087 7956 * LHFPL5 NA 0 NA 0.979 1 NA NA NA NA NA LTS-028 chr6 35773088 36944421 1171334 * c(MIR3925, CDKN1A, STK38, SLC26A8, MAPK14, PI16, C6orf89, KCTD20, PXT1, LHFPL5, MTCH1, BRPF3, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, MAPK13, CPNE5, SRSF3, SRPK1) 0.341862786703218 20 0.0517996901027105 0.788507288216982 1673 0.177819093391339 3 2 1 -6.76338410659154 LTS-028 chr6 36944422 36944927 506 * MTCH1 NA 0 NA 1.718 1 NA NA NA NA NA LTS-028 chr6 36944928 57512678 20567751 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR4647, MIR4641, MIR4642, MIR4462, MIR5685, MLIP-IT1, RCAN2, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, IL17F, EFHC1, BTBD9, FOXP4, KLHDC3, TAF8, C6orf141, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, FAM83B, ADGRF2, TSPO2, NA NA NA NA NA NA NA NA NA LTS-028 UNC5CL, ICK, ENPP4, CMTR1, CUL9, UBR2, DAAM2, GLTSCR1L, CD2AP, MTCH1, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, USP49, ZNF451, FBXO9, MDGA1, ADGRF1, GNMT, TNFRSF21, TINAG, GCLC, GLO1, GLP1R, TREML4, RPL7L1, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, GUCA1A, GUCA1B, PRICKLE4, HCRTR2, HSP90AB1, TREML1, TREML3P, SLC35B2, IL17A, GLYATL3, GFRAL, LINC00951, CRIP3, TRAM2-AS1, KLHL31, MIR206, MCM3, MDFI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MEA1, MEP1A, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MIR133B, MUT, NFKBIE, NFYA, MRPL2, CYP39A1, RAB23, PEX6, PGC, PGK2, PIM1, PKHD1, CLIC5, TREM2, TREM1, POLH, HMGCLL1, GTPBP2, CENPQ, MRPS18A, MRPS10, LRRC1, PPP2R5D, TMEM63B, PRIM2, TBC1D22B, SAYSD1, TRERF1, LRFN2, AARS2, XPO5, PTK7, KIAA1586, ENPP5, PRPH2, RHAG, ELOVL5, ZFAND3, C6orf132, RPS16P5, MRPL14, BMP5, DLK2, DST, SRF, TBCC, MIR586, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TFAP2B, BYSL, CRISP2, LOC730101, GSTA7P, TDRG1, VEGFA, PLA2G7, TFEB, TREML2, COL21A1, TFAP2D, KCNK16, TTBK1, SUPT3H, GCM1, PAQR8, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, MLIP, TJAP1, NCR2, MED20, SLC25A27, BAG2, POLR1C, MAD2L1BP, TRAM2, CUL7, CDC5L) 0.342295777308214 353 0.0752259178959019 0.837910912806493 16388 0.227276637170961 3 2 1 -6.86549635402963 LTS-028 NA NA NA NA LTS-028 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.800182532381313 19 0.133602009999937 3 NA NA -5.77993137575528 LTS-028 chr6 62390154 62996176 606023 * KHDRBS2 NA 0 NA 0.82819961392639 75 0.167946867402373 3 NA NA -5.76630900425234 LTS-028 chr6 63921320 63921442 123 * character(0) 0.441 1 NA 0.472773363228 3 0.0255147016443461 2 2 0 -5.76753107018891 LTS-028 chr6 63921443 73933981 10012539 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.442365228969841 51 0.0564268883201103 0.582501062713936 2622 0.173133583270555 2 1 1 -7.06830205763163 LTS-028 chr6 73933982 73935052 1071 * c(KHDC1L, KHDC1) NA 0 NA 0.406 1 NA NA NA NA NA LTS-028 chr6 73935053 74473443 538391 * c(KHDC1L, MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.431159441045269 5 0.0534116092249616 0.50492439518069 670 0.112341230207574 2 1 1 -7.00917792571633 LTS-028 chr6 74473444 74475664 2221 * CD109 NA 0 NA 0.674 1 NA NA NA NA NA LTS-028 chr6 74475665 85445422 10969758 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.450266631127371 38 0.0371586120119843 0.577223540869733 3860 0.161183067145628 2 1 1 -7.02321041323521 LTS-028 chr6 85445423 91296539 5851117 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, TBX18, CASP8AP2) 0.440648477988758 44 0.0393489296726706 0.53616809487592 3650 0.196961427417339 2 1 1 -6.8813002700529 LTS-028 chr6 91296540 105176030 13879491 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.442705739143092 81 0.0405664787420706 0.575445562806573 2433 0.142774534011899 2 1 1 -7.07737091955079 LTS-028 chr6 105176031 109762502 4586472 * c(LIN28B-AS1, LOC100422737, LOC100996634, BVES, SEC63, BVES-AS1, AIM1, CCDC162P, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, LIN28B, C6orf203, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5) 0.428420046825912 36 0.0825379950987461 0.52747602721889 2891 0.148393734827609 2 1 1 -7.13298132738371 LTS-028 chr6 109762503 109762610 108 * SMPD2 NA 0 NA 0.576 1 NA NA NA NA NA LTS-028 chr6 109762611 121602822 11840212 * c(TRAPPC3L, LOC100287632, TRAF3IP2, GTF3C6, NUS1, SLC16A10, COL10A1, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, FYN, FAM26E, MCM9, ASF1A, AMD1, GPR6, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, CDC40, RWDD1, PLN, GOPC, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, NA NA NA NA NA NA NA NA NA LTS-028 MICAL1, SMPD2, MIR548B, TSPYL1, TPI1P3, METTL24, FAM184A, RPF2, DDO, SLC22A16, WISP3, WASF1, MFSD4B, ZBTB24, FIG4) 0.440650793492296 166 0.0655521319312362 0.556688300307122 6047 0.134456197726867 2 1 1 -6.73762098027943 LTS-028 NA NA NA NA LTS-028 chr6 121602823 121604949 2127 * TBC1D32 NA 0 NA 0.789 1 NA NA NA NA NA LTS-028 chr6 121604950 127768762 6163813 * c(MIR5695, TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, CENPW, SOGA3, HDDC2, PKIB, ECHDC1, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.436071057887841 63 0.0895379102860471 0.592360258481748 2127 0.171676964609012 2 1 1 -7.14193991954 LTS-028 chr6 127768763 127768807 45 * c(SOGA3, KIAA0408) NA 0 NA 0.49 1 NA NA NA NA NA LTS-028 chr6 127768808 150570046 22801239 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, RAET1E, CTGF, LOC153910, ZC2HC1B, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, NA NA NA NA NA NA NA NA NA LTS-028 MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, RAET1G, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, TCF21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, OR2A4, EPM2A, ADGB, ULBP2, ULBP1, PPP1R14C, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.450025125192336 194 0.0397406409864995 0.551939159003367 10952 0.174699622288792 2 1 1 -6.81700173736822 LTS-028 NA NA NA NA LTS-028 chr6 150570047 150570154 108 * PPP1R14C NA 0 NA 0.834 1 NA NA NA NA NA LTS-028 chr6 150570155 150726512 156358 * c(IYD, PPP1R14C) 0.439 1 NA 0.665729353188184 232 0.184962037182058 2 2 0 -5.84781935017458 LTS-028 chr6 150726513 150726655 143 * character(0) NA 0 NA 0.451 1 NA NA NA NA NA LTS-028 chr6 150726656 157517310 6790655 * c(MIR4466, CNKSR3, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, CLDN20, OPRM1, NOX3, TFB1M, MTRF1L, RMND1, PLEKHG1, ARID1B, ZBTB2, VIP, ARMT1, CCDC170, MYCT1, AKAP12) 0.445666650519294 90 0.0601993774361113 0.577556997175405 3396 0.19233471425826 2 1 1 -6.85624599963262 LTS-028 chr6 157517311 158098972 581662 * c(MIR3692, ARID1B, TMEM242, ZDHHC14) 0.364532592723324 7 0.0652672163019806 0.80791549901284 325 0.244308794607372 3 2 1 -6.81016484795365 LTS-028 chr6 158098973 167590641 9491669 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, CAHM, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, PNLDC1, C6orf118, OSTCP1, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, PARK2, SNX9, MPC1, PLG, AGPAT4, TULP4, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, NA NA NA NA NA NA NA NA NA LTS-028 DYNLT1, LOC729603, EZR, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.456156832634337 137 0.0504688909362992 0.563565845458061 5043 0.509043501510584 2 1 1 -6.77902134129739 LTS-028 NA NA NA NA LTS-028 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.225 1 NA NA NA NA NA LTS-028 chr6 167591885 167594100 2216 * TCP10L2 NA 0 NA 0.326698037031819 53 0.156436563512126 1 NA NA -5.76484282222686 LTS-028 chr6 167594101 167594103 3 * TCP10L2 NA 0 NA 0.597 1 NA NA NA NA NA LTS-028 chr6 167594104 170070878 2476775 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.426990663812847 47 0.0646885372033826 0.601347003609118 1454 0.237254801869345 2 1 1 -6.9077814303783 LTS-028 chr6 170070879 170072349 1471 * WDR27 NA 0 NA 0.462 1 NA NA NA NA NA LTS-028 chr6 170072350 170890384 818035 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.461108258466936 14 0.0304570495638016 0.5464344945254 629 0.271417150530205 2 1 1 -6.9542806244367 LTS-028 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.558039841753894 45 0.105185463911045 2 NA NA -5.76441025472572 LTS-028 chr7 193047 227931 34885 * FAM20C 0.29 1 NA 0.911954309782631 37 0.179395673882644 3 3 0 -5.77205295791088 LTS-028 chr7 227932 5926027 5698096 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-028 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.197493395601543 137 0.0491668171881073 0.973118385204893 5331 0.262441317203739 4 3 1 -8.03060640314632 LTS-028 NA NA NA NA LTS-028 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.65 1 NA NA NA NA NA LTS-028 chr7 5937950 6018360 80411 * c(RSPH10B, CCZ1, PMS2) 0.283 1 NA 0.47918235575222 144 0.27818662847491 2 2 0 -5.77900269192243 LTS-028 chr7 6018361 6022539 4179 * PMS2 NA 0 NA 0.91 1 NA NA NA NA NA LTS-028 chr7 6022540 6821140 798601 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.237825579964477 9 0.0683912356308256 0.945604803843656 1296 0.232512028717355 4 3 1 -6.93867971523507 LTS-028 chr7 6821141 6825552 4412 * RSPH10B2 NA 0 NA 1.348 1 NA NA NA NA NA LTS-028 chr7 6825553 6863802 38250 * c(CCZ1B, RSPH10B2) 0.263242209917032 2 0.126572113832392 1.5882367203327 73 0.442650986804188 8 6 2 -6.74545648715655 LTS-028 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.785 1 NA NA NA NA NA LTS-028 chr7 6864270 30868363 24004094 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, NA NA NA NA NA NA NA NA NA LTS-028 DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.199036706965077 267 0.0534103396888965 0.970445099601268 9922 0.281610765092045 4 3 1 -8.94340911859136 LTS-028 NA NA NA NA LTS-028 chr7 30868364 30876178 7815 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.051 1 NA NA NA NA NA LTS-028 chr7 30876179 31692957 816779 * c(INMT-FAM188B, ADCYAP1R1, CCDC129, GHRHR, AQP1, NEUROD6, FAM188B) 0.151914118652843 5 0.0488906944111044 1.12508829703727 606 0.252360679564686 5 4 1 -7.67342572107392 LTS-028 chr7 31692958 31693077 120 * CCDC129 NA 0 NA 0.945 1 NA NA NA NA NA LTS-028 chr7 31693078 34979849 3286772 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.193226268046285 32 0.0550960213861277 1.02087554567981 1433 0.736723395886577 5 4 1 -7.03471674856669 LTS-028 chr7 34979850 34981374 1525 * DPY19L1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-028 chr7 34981375 40498823 5517449 * c(MIR1200, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, MPLKIP, DPY19L1, KIAA0895, VPS41, AMPH, AOAH, FAM183BP, LINC00265, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, HERPUD2, SFRP4, LOC646999, SUGCT, EEPD1, STARD3NL, CDK13, ELMO1, SEPT7) 0.197372859379036 79 0.0505174201350222 0.921487813131148 2515 0.266258938133091 4 3 1 -8.48838178629066 LTS-028 chr7 40498824 40535868 37045 * SUGCT NA 0 NA 1.143 1 NA NA NA NA NA LTS-028 chr7 40535869 47408251 6872383 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, IGFBP1, IGFBP3, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, POLR2J4, TBRG4, NA NA NA NA NA NA NA NA NA LTS-028 STK17A, H2AFV) 0.193280421561229 91 0.0455492112679314 1.00309445594177 4149 0.53672607318536 5 4 1 -7.80082575066029 LTS-028 NA NA NA NA LTS-028 chr7 47408252 47408443 192 * TNS3 0.198 1 NA 1.42182828686009 3 0.170277224940194 5 5 0 -5.76442486850802 LTS-028 chr7 47408444 47546466 138023 * TNS3 0.329 1 NA 1.1145193409685 87 0.176139316473652 4 4 0 -5.76738601845723 LTS-028 chr7 47546467 48494944 948478 * c(C7orf57, ABCA13, PKD1L1, SUN3, HUS1, C7orf65, TNS3, UPP1, C7orf69, LINC00525) 0.358269783767568 21 0.0427966954665561 1.21234329011463 1046 0.263265049857783 5 3 2 -7.34405136782449 LTS-028 chr7 48494945 48506496 11552 * ABCA13 NA 0 NA 0.688 1 NA NA NA NA NA LTS-028 chr7 48506497 48506707 211 * ABCA13 0.289427658820453 3 0.00953939201416943 0.666359097071298 7 0.147122236187982 7 5 2 -6.7432628669676 LTS-028 chr7 48506708 48506727 20 * ABCA13 0.278 1 NA 0.587370533222383 3 0.0496420520660995 2 2 0 -5.76442188329682 LTS-028 chr7 48506728 50685602 2178875 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, ABCA13, DDC, CDC14C, GRB10, VWC2, FIGNL1) 0.198999107717112 24 0.0381298316016609 0.950888626581324 784 0.285584934135529 4 3 1 -8.1843879444027 LTS-028 chr7 50685603 50685625 23 * GRB10 0.346 1 NA 0.508 1 NA NA NA NA NA LTS-028 chr7 50685626 50737538 51913 * GRB10 NA 0 NA 0.958053212560649 18 0.137884495092552 4 NA NA -5.78708810269736 LTS-028 chr7 50737539 57531696 6794158 * c(LOC100130849, MIR3147, EGFR-AS1, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, ZNF713, FKBP9P1, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.360345376131877 44 0.0659464955463248 1.23306293086701 1785 0.274550164686472 5 3 2 -7.28551910830036 LTS-028 chr7 57531697 57533232 1536 * ZNF716 NA 0 NA 1.51877134778562 24 0.452383572578769 6 NA NA -5.76442157758787 LTS-028 chr7 62758725 63023528 264804 * ZNF733P 0.456 1 NA 1.01077834788367 7 0.608562474783227 4 4 0 -5.76618357689709 LTS-028 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.311082768101322 2 0.0721248916810279 1.09641548917736 595 0.29274997845501 4 3 1 -7.03308756853479 LTS-028 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.769 1 NA NA NA NA NA LTS-028 chr7 64643340 65154779 511440 * c(ZNF92, LOC441242, INTS4P2) NA 0 NA 0.650098992395307 95 0.226471311364642 2 NA NA -5.89931531069634 LTS-028 chr7 65154780 65157710 2931 * c(LOC441242, INTS4P2) NA 0 NA 1.107 1 NA NA NA NA NA LTS-028 chr7 65157711 73932628 8774918 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, MIR590, NA NA NA NA NA NA NA NA NA LTS-028 GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.354167822372147 45 0.073074253089898 1.226716105915 3407 0.484463057870672 5 3 2 -7.12805136890255 LTS-028 NA NA NA NA LTS-028 chr7 73932629 74212630 280002 * c(GTF2I, NCF1, GTF2IRD2, GTF2IRD1) 0.338052990419877 3 0.0363455636907725 1.42648688177702 186 0.255151577255095 6 4 2 -6.76614514111212 LTS-028 chr7 74212631 74456284 243654 * c(NA, STAG3L2, PMS2P5, RCC1L, GTF2IRD2) NA 0 NA 0.711 1 NA NA NA NA NA LTS-028 chr7 74456285 75048687 592403 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, GTF2IRD2B, STAG3L1, NCF1C, GATSL2, RCC1L) 0.326637699343329 3 0.0416773319683494 0.949487635671477 199 0.382764210898981 3 2 1 -6.85791263211992 LTS-028 chr7 75048688 76058928 1010241 * c(POM121C, MIR4651, CCL26, SSC4D, SRRM3, HIP1, HSPB1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A, YWHAG, ZP3, TMEM120A) 0.372060132870615 20 0.039078059532711 1.22037351727255 993 0.297418431101515 5 3 2 -7.09121902828605 LTS-028 chr7 76058929 76062245 3317 * ZP3 NA 0 NA 1.071 1 NA NA NA NA NA LTS-028 chr7 76062246 76071229 8984 * ZP3 NA 0 NA 0.54797282470604 39 0.48590375887411 2 NA NA -5.76441840573418 LTS-028 chr7 76071230 76071237 8 * ZP3 NA 0 NA 1.322 1 NA NA NA NA NA LTS-028 chr7 76071238 82435051 6363814 * c(PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3C, FGL2, DTX2, RSBN1L, POMZP3, PCLO, GNAI1, HGF, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, ZP3, CACNA2D1, UPK3B, TMEM60, CD36, MAGI2) 0.351714425923204 36 0.0838994674293028 1.24274863924168 2025 0.321746634895092 5 3 2 -7.12219329251499 LTS-028 chr7 82435052 86506499 4071448 * c(SEMA3A, KIAA1324L, SEMA3D, PCLO, GRM3, SEMA3E) 0.370659565535005 15 0.0412947592662452 1.36609683501192 1035 0.311817159529164 5 3 2 -7.04124125863991 LTS-028 chr7 86506500 100488658 13982159 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPHB4, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, NA NA NA NA NA NA NA NA NA LTS-028 ZKSCAN5, CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, SRRT, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CROT, SAMD9, ZCWPW1, C7orf43, PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SLC12A9, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, TRIP6, MIR653, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.352366701570078 242 0.0632466598444702 1.20652379156328 12805 0.518788387299712 5 3 2 -7.37575266730325 LTS-028 NA NA NA NA LTS-028 chr7 100488659 100549499 60841 * ACHE NA 0 NA 1.28584352763393 56 0.227796993241505 5 NA NA -5.76550604162413 LTS-028 chr7 100549500 100549505 6 * character(0) NA 0 NA 2.252 1 NA NA NA NA NA LTS-028 chr7 100549506 100549573 68 * character(0) 0.29 1 NA 1.94245263214543 3 0.176369876490668 7 7 0 -5.76441274892686 LTS-028 chr7 100549574 100550504 931 * character(0) 0.36214341095054 35 0.0901723186949494 1.88338156650437 57 0.469875468091051 11 7 4 -6.73408872765315 LTS-028 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.096 1 NA NA NA NA NA LTS-028 chr7 100550727 100551065 339 * character(0) 0.27713102515887 7 0.105697456832945 0.551945597160622 39 0.291680201729517 11 8 3 -6.7396673443519 LTS-028 chr7 100551066 100551076 11 * character(0) NA 0 NA 1.156 1 NA NA NA NA NA LTS-028 chr7 100551077 100624879 73803 * MUC12 0.33720840840198 110 0.0854525650135178 1.73028635932382 235 0.650459484244602 6 4 2 -6.73369910486627 LTS-028 chr7 100624880 100633823 8944 * MUC12 NA 0 NA 1.157 1 NA NA NA NA NA LTS-028 chr7 100633824 101267435 633612 * c(MIR4653, MUC12, ZNHIT1, AP1S1, COL26A1, MUC17, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3, MYL10) 0.328665686765499 28 0.07716575816257 1.2290371401511 1110 0.32014623372897 6 4 2 -6.9850327398154 LTS-028 chr7 101267436 101575786 308351 * c(CUX1, MYL10) 0.403 1 NA 1.30659084821268 55 0.325851923570011 5 5 0 -5.76536953447306 LTS-028 chr7 101575787 123517429 21941643 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, SH2B2, CFTR, DUS4L, ZNF277, ASZ1, ASB15, CUX1, BMT2, FEZF1-AS1, IQUB, C7orf66, RNF133, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, HYAL4, TSPAN12, POLR2J2, HYALP1, TES, HBP1, DNAJC2, GPR22, NA NA NA NA NA NA NA NA NA LTS-028 SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, KCND2, SLC26A5, LHFPL3, RNF148, FEZF1, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, ORC5, PNPLA8, TAS2R16, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, PTPRZ1, RINT1, TMEM168, LHFPL3-AS1, SLC13A1, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, WNT2, PRKRIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ST7, CBLL1, CPED1, ORAI2, CAPZA2, ARMC10, IMMP2L, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, PMPCB, DOCK4) 0.356019989460427 181 0.0775975640862383 1.21033426082299 10620 0.293327826937992 5 3 2 -8.1597762273361 LTS-028 NA NA NA NA LTS-028 chr7 123517430 124387092 869663 * c(HYAL4, GPR37, SPAM1, TMEM229A) 0.336346538106843 3 0.239368613927 0.992897682854608 123 0.314971657680407 4 3 1 -6.83019984480779 LTS-028 chr7 124387093 126542667 2155575 * c(C7orf77, POT1, GPR37, GRM8) 0.424 1 NA 1.00763898761968 249 0.19393982867041 4 4 0 -5.91675274408487 LTS-028 chr7 126542668 141765684 15223017 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, MGC27345, ZNF800, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, CLEC5A, MKRN1, UBN2, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, WEE2-AS1, TPI1P2, FLJ40288, HIPK2, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, NA NA NA NA NA NA NA NA NA LTS-028 TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, LOC349160, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, FAM180A, LEP, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NDUFB2, CNOT4, NRF1, WEE2, ATP6V0A4, PAX4, TAS2R3, TAS2R4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, RBM28, TMEM140, AGK, METTL2B, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 STRIP2, PTN, KIAA1549, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, PARP12, CREB3L2, SMO, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, MIR592, MIR593, UBE2H, LUZP6, C7orf49, GCC1, TTC26, CALD1, KDM7A, CALU, SLC37A3, FAM71F1, SLC35B4, TMEM209, TRIM24, MGAM, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, CPA5, CEP41) 0.438987583486102 246 0.0690452970493464 0.981410086579122 11375 0.25659581833005 4 2 2 -7.75838136973648 LTS-028 NA NA NA NA LTS-028 chr7 141765685 141766489 805 * MGAM NA 0 NA 0.539 1 NA NA NA NA NA LTS-028 chr7 141766490 141794410 27921 * MGAM NA 0 NA 0.576688441927459 93 0.135817532215234 2 NA NA -5.76534236032494 LTS-028 chr7 141794411 141794586 176 * MGAM NA 0 NA 0.949 1 NA NA NA NA NA LTS-028 chr7 141794587 142045613 251027 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.400036839081221 19 0.0556589447317767 1.03467087803164 464 0.250835968357974 5 3 2 -6.88691849710614 LTS-028 chr7 142045614 142045690 77 * character(0) 0.253 1 NA 1.936 1 NA NA NA NA NA LTS-028 chr7 142045691 142499874 454184 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.312223939822088 63 0.113596791005641 1.25175876432464 425 2.85945957540089 10 7 3 -6.75546089420145 LTS-028 chr7 142499875 143001913 502039 * c(OR9A2, C7orf34, TMEM139, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, CASP2, OR6W1P) 0.437 1 NA 0.985938509199024 739 0.175418285189369 4 4 0 -5.84128055758305 LTS-028 chr7 143001914 143840031 838118 * c(CLCN1, OR2A14, OR6B1, OR2F2, LOC154761, EPHA1, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR2A12, OR2A25, OR2A5, CTAGE15, OR2A2, ZYX, CASP2, FAM131B, TCAF1) 0.423539081830536 20 0.0512389654359587 1.055448700516 907 0.477450274305691 4 2 2 -6.81428831813372 LTS-028 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.234 1 NA NA NA NA NA LTS-028 chr7 143883365 144074420 191056 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.436087736165182 2 0.144956890143242 0.575880667094648 159 0.33454686298746 2 1 1 -6.73513145370757 LTS-028 chr7 144074421 144075785 1365 * ARHGEF5 NA 0 NA 1.569 1 NA NA NA NA NA LTS-028 chr7 144075786 156469819 12394034 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, NA NA NA NA NA NA NA NA NA LTS-028 CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, LINC00244, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.429200132485716 154 0.0645062683292448 0.98985211690576 7887 0.238156375416324 4 2 2 -7.58513088605965 LTS-028 NA NA NA NA LTS-028 chr7 156469820 156473482 3663 * RNF32 NA 0 NA 0.676 1 NA NA NA NA NA LTS-028 chr7 156473483 158738878 2265396 * c(DNAJB6, LOC100506585, MIR5707, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, UBE3C) 0.434751553087864 36 0.0369894021716474 0.92899510769235 1478 0.21763590914099 4 2 2 -7.33407007910363 LTS-028 chr7 158738879 159025951 287073 * c(LINC00689, WDR60, VIPR2) NA 0 NA 0.96924569083135 140 0.13815934616665 4 NA NA -5.86460987606729 LTS-028 chr8 182757 182934 178 * ZNF596 0.406 1 NA 1.26372176340112 3 0.299875529734144 5 5 0 -5.76441394841959 LTS-028 chr8 182935 7305471 7122537 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.358872642383101 83 0.0831640127221396 1.24181741718436 2324 0.52076509068887 5 3 2 -6.9651599414869 LTS-028 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.77 1 NA NA NA NA NA LTS-028 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.296908399555953 2 0.187383297014435 0.687259381564314 101 0.406380203141037 3 2 1 -6.81495629112927 LTS-028 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.325 1 NA NA NA NA NA LTS-028 chr8 8175295 29886668 21711374 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, MIR4660, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, PNMA2, ADAM28, LZTS1, CHRNA2, CLU, CLDN23, VPS37A, NKX2-6, SGCZ, ADRA1A, CTSB, LOC157273, SGK223, PEBP4, CDCA2, ESCO2, FBXO16, LINC00599, TDH, C8orf48, DPYSL2, DUSP4, EGR3, R3HCC1, PRSS55, C8orf74, LGI3, DMTN, NA NA NA NA NA NA NA NA NA LTS-028 EPHX2, EXTL3, PTK2B, FDFT1, FGL1, XPO7, TRIM35, RHOBTB2, KIF13B, PSD3, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, GATA4, FGF20, GFRA2, ADAMDEC1, GNRH1, XKR6, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC389641, NUGGC, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, SCARA3, PDGFRL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ATP6V1B2, PNOC, C8orf58, KCTD9, PINX1, PIWIL2, ELP3, INTS10, PPP2R2A, CCDC25, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, LINC00589, SH2D4A, BLK, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STC1, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, HMBOX1, PPP1R3B, FZD3, NUDT18, TUSC3, DOCK5, BIN3-IT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 REEP4, STMN4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, CHMP7, MFHAS1, RP1L1, ENTPD4, PHYHIP) 0.357407775832695 423 0.0735998955033774 1.23444028226196 14106 1.44081579191321 5 3 2 -6.97169467145708 LTS-028 NA NA NA NA LTS-028 chr8 29886669 29920506 33838 * MIR548O2 NA 0 NA 0.911 1 NA NA NA NA NA LTS-028 chr8 29920507 29927576 7070 * c(MIR548O2, SARAF) 0.241 1 NA 0.75699466698469 44 0.240809815697268 3 3 0 -5.76485235088595 LTS-028 chr8 29927577 29931380 3804 * c(MIR548O2, SARAF) NA 0 NA 1.27 1 NA NA NA NA NA LTS-028 chr8 29931381 33424546 3493166 * c(RBPMS-AS1, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, LEPROTL1, GSR, GTF2E2, PURG, NRG1, SARAF, PPP2CB, TEX15, MBOAT4, WRN, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.387560587264035 25 0.0452908379255672 1.18803313706168 1564 0.246425325330332 5 3 2 -7.23114766435264 LTS-028 chr8 33424547 33455297 30751 * c(DUSP26, RNF122) NA 0 NA 1.27711246172432 41 0.231003159623624 5 NA NA -5.7651507948085 LTS-028 chr8 33455298 33455300 3 * DUSP26 0.264 1 NA 2.055 1 NA NA NA NA NA LTS-028 chr8 33455301 37641926 4186626 * c(ERLIN2, PROSC, UNC5D, KCNU1, LOC728024, DUSP26, ZNF703) 0.26496109473342 3 0.0340196021924615 1.82554892389013 881 0.352304602203803 7 5 2 -7.05268154661614 LTS-028 chr8 37641927 37654431 12505 * ADGRA2 NA 0 NA 0.915 1 NA NA NA NA NA LTS-028 chr8 37654432 39311750 1657319 * c(GOT1L1, LETM2, ADRB3, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.264155082594942 28 0.0741478574330018 1.68510376008926 2252 0.382884135529174 7 5 2 -6.86960673979015 LTS-028 chr8 39311751 39349408 37658 * ADAM3A 0.287847881790382 2 0.0318198051533946 2.87998506271758 53 0.897618581337131 14 10 4 -6.7347072598799 LTS-028 chr8 39349409 39349414 6 * ADAM3A NA 0 NA 1.719 1 NA NA NA NA NA LTS-028 chr8 39349415 42692419 3343005 * c(LOC100130964, AP3M2, CHRNB3, SMIM19, GPAT4, NKX6-3, ADAM3A, IDO2, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, GINS4, ADAM18, CHRNA6) 0.245719554947583 40 0.0509247559565166 1.73767681361392 2363 0.418405820399958 8 6 2 -7.16723513759678 LTS-028 chr8 42692420 43212050 519631 * c(MIR4469, HGSNAT, FNTA, POTEA, THAP1, RNF170, POMK, HOOK3) NA 0 NA 1.78789519364669 601 0.561026967862406 7 NA NA -5.76583531935077 LTS-028 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.273 1 NA 1.7766181236332 47 0.231148628054806 7 7 0 -5.77210631413834 LTS-028 chr8 48102988 48975705 872718 * c(LOC100287846, CEBPD, SPIDR, MCM4, PRKDC, UBE2V2) 0.295609169497431 3 0.032654759734736 1.64797266963482 893 0.3556273497535 7 5 2 -6.80781495935949 LTS-028 chr8 48975706 51706237 2730532 * c(C8orf22, SNTG1, SNAI2, EFCAB1) 0.280374887179914 3 0.01670329308849 1.94892416460995 279 0.553723860316139 7 5 2 -6.946946510925 LTS-028 chr8 51706238 67972815 16266578 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, COPS5, XKR4, PCMTD1, TMEM68, ADHFE1, UBXN2B, PXDNL, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, FAM150A, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, OPRK1, NA NA NA NA NA NA NA NA NA LTS-028 PDE7A, ATP6V1H, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, VCPIP1, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, ST18, TOX, RB1CC1) 0.258221768348235 98 0.0447541616883655 1.67794944129425 6004 0.400721893565548 7 5 2 -7.59273794761998 LTS-028 NA NA NA NA LTS-028 chr8 67972816 67973598 783 * COPS5 NA 0 NA 1.755 1 NA NA NA NA NA LTS-028 chr8 67973599 100904183 32930585 * c(MIR875, C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC01592, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, NCOA2, ARFGEF1, POP1, COPS5, WWP1, STMN2, SLC26A7, OSR2, C8orf34, COX6C, FAM92A1, NDUFAF6, DCAF4L2, RALYL, RDH10, C8orf37, VPS13B, SLC7A13, SBSPON, DECR1, NA NA NA NA NA NA NA NA NA LTS-028 CNBD1, TMEM64, E2F5, ERICH5, EYA1, FABP4, FABP5, SULF1, HEY1, TRAM1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, SNORA72, STAU2, TRIQK, DPY19L4, C8orf34-AS1, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 UBE2W, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, CPA6, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CSPP1, PREX2, SLCO5A1, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TP53INP1, PTDSS1) 0.242726895258884 242 0.0514967325486495 1.74256362586869 12905 0.534947326463119 7 5 2 -7.47148028146876 LTS-028 NA NA NA NA LTS-028 chr8 100904184 104053252 3149069 * c(MIR4471, MIR5680, COX6C, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.258405273543621 32 0.0493265840613486 1.60966487272573 1764 0.389671348927299 7 5 2 -7.21684074391031 LTS-028 chr8 104053253 104054527 1275 * ATP6V1C1 NA 0 NA 2.141 1 NA NA NA NA NA LTS-028 chr8 104054528 121587372 17532845 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, MTBP, ANGPT1, MRPL13, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRHR, TRPS1, COL14A1, DSCC1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, EBAG9, NA NA NA NA NA NA NA NA NA LTS-028 PKHD1L1, EMC2, RIMS2) 0.251795141418636 110 0.0609161697179897 1.81280476353069 5471 2.21543533005311 8 6 2 -6.78537986236563 LTS-028 NA NA NA NA LTS-028 chr8 121587373 121587377 5 * SNTB1 NA 0 NA 1.595 1 NA NA NA NA NA LTS-028 chr8 121587378 135612703 14025326 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, EFR3A, LRRC6, NSMCE2, ATAD2, ASAP1-IT1, HAS2, ANXA13, KLHL38, KCNQ3, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, WDYHV1, GSDMC, ZFAT, PVT1, ZFAT-AS1, HAS2-AS1, NA NA NA NA NA NA NA NA NA LTS-028 ST3GAL1, SLA, FER1L6, SNTB1, SQLE, TG, CASC8, LINC00977, OC90, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.252682344312294 117 0.0525335057917253 1.68246398131304 5057 0.386615282518284 7 5 2 -7.52855132910817 LTS-028 NA NA NA NA LTS-028 chr8 135612704 140946146 5333443 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, TRAPPC9) 0.279522122749555 27 0.0557048336325358 1.93010354138135 879 0.429873063129871 7 5 2 -6.78076294437628 LTS-028 chr8 140946147 142185738 1239592 * c(DENND3, AGO2, CHRAC1, PTK2, TRAPPC9) 0.278695923763589 21 0.053932938959062 1.646689956873 720 0.444297944739319 7 5 2 -6.81424924900291 LTS-028 chr8 142185739 142186637 899 * DENND3 NA 0 NA 2.402 1 NA NA NA NA NA LTS-028 chr8 142186638 142240386 53749 * c(DENND3, SLC45A4) 0.208109078431657 16 0.0279344470740578 2.09627422564664 286 0.489715482484281 10 8 2 -6.75028899105262 LTS-028 chr8 142240387 146279735 4039349 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, NA NA NA NA NA NA NA NA NA LTS-028 SPATC1, MROH5, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, C8orf33, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.263960756232698 185 0.0538936624359841 1.7919071702737 7255 0.412581891876981 7 5 2 -6.89026779431707 LTS-028 NA NA NA NA LTS-028 chr8 146279736 146280905 1170 * C8orf33 NA 0 NA 1.86485147980429 19 0.403361061827775 7 NA NA -5.7644102109385 LTS-028 chr9 14732 215057 200326 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0 1 NA 0.56404384681311 48 0.295325669947242 2 2 0 -5.76454442703014 LTS-028 chr9 215058 8341791 8126734 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.0338468526781892 78 0.0202551490310751 0.547888259314803 3966 0.16184921010946 2 2 0 -6.80280650985408 LTS-028 chr9 8341792 14617358 6275567 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.0355958294959098 15 0.0110754984838908 0.611060303768523 887 0.192352529059801 2 2 0 -7.46203127546222 LTS-028 chr9 14617359 33113121 18495763 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, B4GALT1, TUSC1, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, NA NA NA NA NA NA NA NA NA LTS-028 HACD4, LINC01242, TMEM215, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, ACO1, CDKN2A-AS1, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, SMU1, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, CER1, PLAA) 0.0395172538609996 123 0.0256999054332428 0.560379621823879 5892 0.155774853002624 2 2 0 -6.75649944818895 LTS-028 NA NA NA NA LTS-028 chr9 33113122 33113786 665 * B4GALT1 0.063 1 NA 0.4921408886718 11 0.153013784286966 2 2 0 -5.76468239695971 LTS-028 chr9 33113787 33555695 441909 * c(B4GALT1, SPINK4, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, CHMP5, BAG1, NOL6) 0.245308836418031 9 0.214403112021361 0.560252951445797 629 0.127540251336255 2 1 1 -7.20168482290957 LTS-028 chr9 33555696 33571779 16084 * ANKRD18B 0.052 1 NA 0.447616517361502 19 0.126524689590702 2 2 0 -5.79379300608526 LTS-028 chr9 33571780 33750845 179066 * c(PTENP1, ANXA2P2, ANKRD18B, PRSS3) 0.0264461818421944 9 0.0208193286261696 0.555159048222838 123 0.227265791759249 2 2 0 -6.83314018312057 LTS-028 chr9 33750846 33794890 44045 * PRSS3 0.277 1 NA 0.934985611028956 9 0.572665429761955 3 3 0 -5.76584412106243 LTS-028 chr9 33794891 33887010 92120 * c(UBE2R2, PRSS3) 0.349751066411427 11 0.1550446856408 0.777625900228111 66 0.314570079206422 3 2 1 -6.73633140692628 LTS-028 chr9 33887011 33917498 30488 * UBE2R2 0.01 1 NA 0.539104233268522 21 0.197893441745082 2 2 0 -5.76499381483658 LTS-028 chr9 33917499 34724796 807298 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, KIAA1161, CCL19, CCL21, C9orf24) 0.0462781692742499 32 0.0264748625449537 0.578303357451712 1476 0.195486368148336 2 2 0 -6.85498354435066 LTS-028 chr9 34724797 34725047 251 * FAM205A 0.475 1 NA 0.697462148585503 7 0.11300948127101 3 3 0 -5.76470954868068 LTS-028 chr9 34725048 34977014 251967 * c(PHF24, FAM205A, FAM205BP) 0.208475850108561 11 0.153877932731819 0.515796380114447 249 0.258525721941355 2 2 0 -7.42664502543294 LTS-028 chr9 34977015 34978431 1417 * PHF24 0.012 1 NA 0.65000621023247 21 0.17711990826771 2 2 0 -5.76503348062665 LTS-028 chr9 34978432 40774194 5795763 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, ZNF658, SPAG8, FBXO10, SIT1, STOML2, IGFBPL1, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, POLR1E, SHB, HRCT1, NA, MSMP, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, NA NA NA NA NA NA NA NA NA LTS-028 FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.0322626907189862 79 0.0201857971606452 0.57508685852873 4822 0.177925201745164 2 2 0 -6.83679741195596 LTS-028 NA NA NA NA LTS-028 chr9 40774195 40774441 247 * c(ZNF658, ZNF658B, NA) NA 0 NA 0.455 1 NA NA NA NA NA LTS-028 chr9 40774442 43861081 3086640 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, CNTNAP3B) 0.0304363261480389 2 0.0254558441227157 0.380518421972648 42 0.193888734751183 1 1 0 -9.71373330491259 LTS-028 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.501707755769934 6 0.276501476789305 2 NA NA -5.79267343573265 LTS-028 chr9 65602571 66457127 854557 * LOC286297 0.319 1 NA 0.781385157359395 4 0.236543688706054 3 3 0 -5.78377779169204 LTS-028 chr9 66457128 68433613 1976486 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.349555278224241 28 0.100156775255744 0.77579837079781 77 0.333099424993445 3 2 1 -6.76740151176545 LTS-028 chr9 69002289 69002304 16 * character(0) 0.213 1 NA 0.426 1 NA NA NA NA NA LTS-028 chr9 69002305 71555492 2553188 * c(LOC100133920, FAM122A, TMEM252, FOXD4L3, LOC440896, PGM5, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.065 1 NA 0.588978861464502 257 0.145819376567182 2 2 0 -5.96118118628233 LTS-028 chr9 71555493 90322215 18766723 * c(VPS13A-AS1, GAS1RR, MAMDC2-AS1, SMC5-AS1, BANCR, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, RASEF, PRUNE2, DAPK1, ALDH1A1, SMC5, VPS13A, AGTPBP1, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, C9orf170, MIR204, MIR7-1, IDNK, LOC440173, FOXB2, NTRK2, LOC494127, C9orf135-AS1, PCA3, NA NA NA NA NA NA NA NA NA LTS-028 ABHD17B, PCSK5, GOLM1, NMRK1, C9orf40, RFK, KIF27, PRKACG, NAA35, RORB, SLC28A3, RPSAP9, KLF9, TLE1, TLE4, ZFAND5, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, PIP5K1B, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14) 0.0393553521992501 118 0.0378180606015609 0.560302257195236 7831 0.161880249670638 2 2 0 -6.7453506584839 LTS-028 NA NA NA NA LTS-028 chr9 90322216 90388539 66324 * c(CTSL, DAPK1, CTSL3P) 0.034 1 NA 0.614181748561143 73 0.208488073127038 2 2 0 -5.77266635889995 LTS-028 chr9 90388540 98638288 8249749 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, LOC100507346, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, CTSLP8, NXNL2, MIRLET7DHG, FAM120AOS, LINC00475, ZNF169, ECM2, S1PR3, SUSD3, FANCC, FBP1, FAM120A, BICD2, CDK20, C9orf47, SPATA31E1, LOC286238, MIR4290HG, IARS, LINC01501, NA NA NA NA NA NA NA NA NA LTS-028 ERCC6L2, CTSL3P, LOC392364, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, SPATA31C1, C9orf129, NFIL3, NINJ1, ROR2, OMD, OGN, PHF2, SHC3, NUTM2F, DIRAS2, ASPN, AUH, NOL8, BARX1, PTCH1, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZNF484, CARD19, MFSD14B, C9orf3, FBP2, FGD3) 0.0300270049858566 79 0.0152285733076147 0.572048028018669 4865 0.155521832707209 2 2 0 -6.91207501629763 LTS-028 NA NA NA NA LTS-028 chr9 98638289 98638306 18 * ERCC6L2 0.046 1 NA 0.038 1 NA NA NA NA NA LTS-028 chr9 98638307 107267304 8628998 * c(LOC100132781, LINC00092, CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, SLC35D2, GRIN3A, COL15A1, OR13F1, CTSV, CYLC2, TSTD2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ANKS6, ZNF510, ALDOB, HABP4, FOXE1, ERP44, TDRD7, INVS, LOC286359, HSD17B3, GAS2L1P2, MURC, ERCC6L2, LOC441454, LOC441455, NUTM2G, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, NA NA NA NA NA NA NA NA NA LTS-028 RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, MFSD14C, TMEM246, ALG2, CDC14B, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.0520232332268346 88 0.0512879876798728 0.561470537715354 5211 0.565364844588339 2 2 0 -6.79872667475214 LTS-028 NA NA NA NA LTS-028 chr9 107267305 107331504 64200 * c(OR13C8, OR13C3, OR13C4, OR13F1) 0.04 1 NA 0.606793813863418 57 0.226784755193046 2 2 0 -5.76955635999267 LTS-028 chr9 107331505 116858625 9527121 * c(FAM225B, MIR548Q, MIR3134, MIR4668, ACTL7B, ACTL7A, AKAP2, KIF12, PALM2, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, ZNF483, C9orf84, KIAA1958, ZNF883, ABCA1, LPAR1, ALAD, FKTN, PTGR1, FKBP15, KIAA0368, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, GNG10, FAM225A, OR13C9, OR13D1, NA, OR13C2, C9orf152, SNX30, MIR32, PALM2-AKAP2, MUSK, POLE3, EPB41L4B, BSPRY, NA NA NA NA NA NA NA NA NA LTS-028 DNAJC25, FAM206A, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, SUSD1, LRRC37A5P, TAL2, TXN, UGCG, ZFP37, SVEP1, HDHD3, FSD1L, HSDL2, IKBKAP, CTNNAL1, PRPF4, KLF4, PTBP3) 0.0377129086392266 104 0.0345331596441913 0.572950998289976 7305 0.765997582835846 2 2 0 -6.74302808330245 LTS-028 NA NA NA NA LTS-028 chr9 116858626 116958216 99591 * c(KIF12, COL27A1) 0.055 1 NA 0.566034953242346 109 0.117390806399459 2 2 0 -5.76518809584201 LTS-028 chr9 116958217 117074810 116594 * c(MIR455, COL27A1) 0.0549150014229336 5 0.0284200633356085 0.571080498395219 304 0.171702057708999 2 2 0 -7.0147433670142 LTS-028 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 1.346 1 NA NA NA NA NA LTS-028 chr9 117085363 117089921 4559 * ORM1 0.40510391388914 4 0.213468772111208 1.01048225122518 44 0.249177704743475 5 3 2 -6.73677731661093 LTS-028 chr9 117089922 117089956 35 * ORM1 NA 0 NA 0.991 1 NA NA NA NA NA LTS-028 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.381 1 NA NA NA NA NA LTS-028 chr9 117092173 117096742 4570 * c(ORM1, ORM2, AKNA) 0.026 1 NA 0.699996241960303 35 0.260392931915589 3 3 0 -5.7653944137213 LTS-028 chr9 117096743 120475468 3378726 * c(SNORA70C, ASTN2-AS1, LOC100505478, TMEM268, TRIM32, ASTN2, WHRN, TNC, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.0365417532309011 37 0.0233299547103458 0.587533641063731 1463 0.154872557077994 2 2 0 -6.94512107518714 LTS-028 chr9 120475469 121929932 1454464 * c(BRINP1, TLR4) 0.068 1 NA 0.603330220091455 97 0.183023892634033 2 2 0 -5.91580699044338 LTS-028 chr9 121929933 125670591 3740659 * c(LOC100288842, MIR4478, ZBTB6, CNTRL, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, BRINP1, MEGF9, STOM, PSMD5-AS1, MORN5, OR1L4, PHF19, FBXW2, OR1J4, LHX6, OR1L3, OR1L1, OR1J2, GGTA1P, GSN, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, MIR147A, NDUFA8, PDCL, RAB14, RC3H2, CDK5RAP2, PSMD5, PTGS1, SNORD90, TRAF1, C5, MRRF, RBM18) 0.0354928151228885 55 0.0196347112411129 0.574074699149525 3140 0.156994298762728 2 2 0 -6.80146194055842 LTS-028 chr9 125670592 125678140 7549 * ZBTB6 0.02 1 NA 0.564166133439752 89 0.127062037963027 2 2 0 -5.76443868387088 LTS-028 chr9 125678141 130259618 4581478 * c(LOC100129034, MIR181A2HG, RABEPK, NEK6, RPL35, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, SNORA65, GOLGA1, GPR21, CRB2, SCAI, SLC2A8, HSPA5, ADGRD2, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PBX3, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, RPL12, NRON, MIR601, ZNF79, MAPKAP1, MIR600HG, ARPC5L, GARNL3, MVB12B, LRSAM1, LHX2, RALGPS1) 0.0385636770254376 60 0.02226131401546 0.556822912458713 3940 0.138452419501296 2 2 0 -6.74950974519908 LTS-028 chr9 130259619 130287287 27669 * c(FAM129B, LRSAM1) 0.021 1 NA 0.568788829761506 115 0.139240960222967 2 2 0 -5.76469526693126 LTS-028 chr9 130287288 130504070 216783 * c(SH2D3C, MIR3911, PTRH1, TTC16, TOR2A, CFAP157, FAM129B, STXBP1) 0.0341328228137114 13 0.0206282728560983 0.563263403466855 443 0.134244709745771 2 2 0 -6.73465540251461 LTS-028 chr9 130504071 130533428 29358 * SH2D3C NA 0 NA 0.548989227306438 78 0.138889226062417 2 NA NA -5.76467967945116 LTS-028 chr9 130533429 130536717 3289 * SH2D3C 0.311 1 NA 0.85801769230711 19 0.1916009956145 3 3 0 -5.76453142675343 LTS-028 chr9 130536718 131366702 829985 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3960, MIR219B, MIR4672, CDK9, SLC27A4, SLC25A25, PIP5KL1, DNM1, ENG, AK1, NAIF1, FPGS, CIZ1, TRUB2, ST6GALNAC4, GLE1, GOLGA2, ST6GALNAC6, SWI5, PTGES2-AS1, LCN2, FAM102A, MIR199B, MIR219A2, ODF2, COQ4, CERCAM, SPTAN1, C9orf16, PTGES2, URM1, DPM2) 0.30885718922599 12 0.106841286991783 0.823395464677777 2106 0.21878344851133 3 2 1 -6.7876806278692 LTS-028 chr9 131366703 131367285 583 * SPTAN1 NA 0 NA 1.118 1 NA NA NA NA NA LTS-028 chr9 131367286 131419097 51812 * c(SPTAN1, WDR34) NA 0 NA 1.0471561832647 209 0.204243163030807 4 NA NA -5.76503450185682 LTS-028 chr9 131419098 131445955 26858 * c(SET, WDR34) NA 0 NA 0.734 1 NA NA NA NA NA LTS-028 chr9 131445956 135468738 4022783 * c(LOC100272217, LOC100506100, LINC00963, LAMC3, ZER1, POMT1, USP20, CRAT, ASB6, TOR1A, ENDOG, DOLK, FNBP1, SETX, EXOSC2, NCS1, NUP188, ABL1, PHYHD1, SNORD62A, TOR1B, FAM78A, RAPGEF1, NTMT1, PKN3, QRFP, C9orf50, IER5L, CFAP77, C9orf106, ASS1, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, BARHL1, SH3GLB2, DOLPP1, GPR107, PRDM12, SET, TTF1, NUP214, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, NA NA NA NA NA NA NA NA NA LTS-028 FIBCD1, KYAT1, FUBP3, MED27, PTGES) 0.321022963125254 93 0.0681261308564478 0.816064163176085 5645 0.258565328944238 3 2 1 -6.78506872791521 LTS-028 NA NA NA NA LTS-028 chr9 135468739 135570223 101485 * c(DDX31, GTF3C4) NA 0 NA 0.7917548823156 338 0.15130473289772 3 NA NA -5.76728138085122 LTS-028 chr9 135570224 135739214 168991 * AK8 0.456 1 NA 1.08049970500926 53 0.323221984677419 4 4 0 -5.76441571807942 LTS-028 chr9 135739215 135866648 127434 * c(SPACA9, AK8, TSC1, GFI1B) 0.457609103276031 10 0.024964196584531 1.04079652860771 342 0.215271051373611 4 2 2 -6.94966626802374 LTS-028 chr9 135866649 135906086 39438 * c(GFI1B, GTF3C5) NA 0 NA 1.02890433609412 14 0.0970102520921836 4 NA NA -5.76984894069588 LTS-028 chr9 135906087 135930735 24649 * GTF3C5 0.389 1 NA 0.799180289392899 47 0.121668956086241 3 3 0 -5.76496315614741 LTS-028 chr9 135930736 137772604 1841869 * c(RNU6ATAC, MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, CEL, CELP, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, DBH, STKLD1, SARDH, GBGT1, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, TMEM8C, REXO4, RALGDS, RPL7A, RXRA, FAM163B, SURF1, SURF2, SURF4, MED22, SURF6, VAV2, BRD3, GTF3C5, ADAMTSL2) 0.344365098729311 72 0.0465083834803932 0.843198481715612 2558 0.202391471049762 3 2 1 -6.76026318288588 LTS-028 chr9 137772605 137775084 2480 * FCN2 0.247 1 NA 0.769187754284127 11 0.149354246371139 3 3 0 -5.76466462850033 LTS-028 chr9 137775085 141070283 3295199 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, PPP1R26-AS1, MIR4673, MIR4674, MIR4479, TUBB4B, UBAC1, OLFM1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, ZMYND19, NACC2, C9orf116, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, FCN1, FCN2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, OBP2A, GLT6D1, NA NA NA NA NA NA NA NA NA LTS-028 PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, LCN10, STPG3, NRARP, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, EHMT1-IT1, TUBBP5, RNF224, MRPL41, SNAPC4, SNORA17A, SNORA17B, MIR602, TRAF2, RNF208, DNLZ, C8G, CACNA1B, EHMT1, LHX3, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, SAPCD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, ENTPD2, PPP1R26, SEC16A) 0.304225595214334 174 0.0664955174699651 0.838746898502354 7044 0.595463751320459 3 2 1 -6.91574865914749 LTS-028 NA NA NA NA LTS-028 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.555501045523298 5 0.129899191683397 2 NA NA -5.76441165831131 LTS-028 chr10 94832 94870 39 * TUBB8 0.146 1 NA 1.543 1 NA NA NA NA NA LTS-028 chr10 94871 18060381 17965511 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, TUBB8, IL2RA, NA NA NA NA NA NA NA NA NA LTS-028 IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.258591540747054 214 0.0521960776382634 1.04498170881843 8856 0.288062039712047 4 3 1 -6.85558952658671 LTS-028 NA NA NA NA LTS-028 chr10 18060382 18085892 25511 * c(MRC1, NA, TMEM236) NA 0 NA 0.359 1 NA NA NA NA NA LTS-028 chr10 18085893 18088346 2454 * c(MRC1, NA, TMEM236) NA 0 NA 0.41944777211564 39 0.278680443292464 2 NA NA -5.76596334705965 LTS-028 chr10 18088347 18088612 266 * c(MRC1, NA, TMEM236) NA 0 NA 0.26 1 NA NA NA NA NA LTS-028 chr10 18088613 18196475 107863 * c(MRC1, NA, TMEM236) NA 0 NA 0.111763446845963 39 0.0759823919512914 1 NA NA -10.351336176849 LTS-028 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.558 1 NA NA NA NA NA LTS-028 chr10 18198201 26446312 8248112 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.242091925556174 84 0.0654443700908801 1.1047829232538 3326 0.332529837640623 4 3 1 -6.80018615498488 LTS-028 chr10 26446313 26446346 34 * MYO3A NA 0 NA 1.028 1 NA NA NA NA NA LTS-028 chr10 26446347 38651190 12204844 * c(ABI1, MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, ZNF248, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CCDC7, EPC1, NA NA NA NA NA NA NA NA NA LTS-028 FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.250596690035825 118 0.0610809605867271 1.03359864876083 4975 0.444064977194599 4 3 1 -6.80930787699586 LTS-028 NA NA NA NA LTS-028 chr10 38651191 38740384 89194 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 1.12571893624985 43 0.212332912617735 4 NA NA -5.76664474041917 LTS-028 chr10 42379865 42947161 567297 * LOC441666 0.101308536978343 3 0.161658075373095 0.800747688655937 41 0.280675470093478 3 3 0 -6.86951818969079 LTS-028 chr10 42947162 42949600 2439 * character(0) NA 0 NA 1.144 1 NA NA NA NA NA LTS-028 chr10 42949601 46143958 3194358 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.244840091314148 22 0.0438718124851929 1.04491025431643 1660 0.219962106144037 4 3 1 -6.83360954176731 LTS-028 chr10 46143959 46963951 819993 * c(AGAP4, FAM21C, PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15, ZFAND4) 0.498 1 NA 0.982144713350175 123 0.562993623236899 4 4 0 -5.77781734598255 LTS-028 chr10 46963952 47087830 123879 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, SYT15, GPRIN2) 0.458266249458928 38 0.0564558829005667 1.10768443557999 152 0.175232050377805 4 2 2 -6.78179956100177 LTS-028 chr10 47087831 47673864 586034 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.352 1 NA 1.04095214412713 53 0.515307154729613 4 4 0 -5.76602155269612 LTS-028 chr10 47673865 48025425 351561 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.28522765085235 4 0.114985506333045 1.0147106292797 79 0.356587957960466 4 3 1 -6.76995546300493 LTS-028 chr10 48025426 48025440 15 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.159 1 NA NA NA NA NA LTS-028 chr10 48025441 50189505 2164065 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.297232865613433 20 0.0454979467437239 1.14690510040601 1131 0.398449461036947 4 3 1 -7.15917939176001 LTS-028 chr10 50189506 50190511 1006 * c(NA, WDFY4) NA 0 NA 0.699 1 NA NA NA NA NA LTS-028 chr10 50190512 51050191 859680 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, NA, OGDHL, WDFY4, DRGX, SLC18A3, PARG) 0.269625746887186 13 0.0439059309117888 1.03632034768305 1083 0.202549371624498 4 3 1 -6.78687365277432 LTS-028 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.501828219990682 39 0.480336854641746 2 NA NA -5.77455539062417 LTS-028 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.999 1 NA NA NA NA NA LTS-028 chr10 51537127 52516665 979539 * c(TIMM23, SGMS1, NA, FAM21A, AGAP6, MSMB, NA, ASAH2, ASAH2B, NCOA4, PARG) 0.380784371870604 17 0.0806589132961612 1.04102066477874 363 0.452410953034968 5 3 2 -6.9437265353236 LTS-028 chr10 52516666 52573698 57033 * A1CF 0.256 1 NA 1.30149052044772 31 0.44178740812578 5 5 0 -5.76454154880478 LTS-028 chr10 52573699 62648852 10075154 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, PCDH15, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.243157805873079 32 0.078948227216608 1.11029727704059 2613 0.367735625897675 4 3 1 -6.79624457068054 LTS-028 chr10 62648853 71026891 8378039 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A, RHOBTB1) 0.256821453858152 61 0.0549913008520339 1.01463400093306 3634 0.268123575471457 4 3 1 -6.97962013411652 LTS-028 chr10 71026892 82005335 10978444 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, EIF5AL1, USP54, FUT11, OIT3, EIF4EBP2, TMEM254-AS1, PLAC9, ZCCHC24, UNC5B, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, HK1, ANXA7, ANXA11, FAM149B1, DUPD1, KCNMA1, C10orf105, C10orf55, NA NA NA NA NA NA NA NA NA LTS-028 LINC00595, DNAJC9-AS1, LINC00857, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, NPFFR1, C10orf54, LOC642361, SFTPD, BEND3P3, SFTPA1, TACR2, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, SYNPO2L, TMEM254, HKDC1, CAMK2G, C10orf11, PLA2G12B, ZNF503, AIFM2, NDST2, MBL1P, SGPL1, MCU, DLG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CHST3, SEC24C, SPOCK2) 0.265680117725885 189 0.0528857804620107 1.05952350859321 8462 0.256213919760693 4 3 1 -6.77192989444174 LTS-028 NA NA NA NA LTS-028 chr10 82005336 82005434 99 * character(0) NA 0 NA 0.912 1 NA NA NA NA NA LTS-028 chr10 82005435 82009627 4193 * character(0) 0.342105295139805 2 0.140007142674936 0.65286069151308 38 0.359804428661988 3 2 1 -6.73404912477791 LTS-028 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.196 1 NA NA NA NA NA LTS-028 chr10 82012432 94112528 12100097 * c(KLLN, HECTD2-AS1, FAS-AS1, GRID1-AS1, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, NRG3, ADIRF, LDB3, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, DYDC1, HECTD2, FGFBP3, LINC00858, CPEB3, WAPL, IFIT5, LRIT1, ANKRD1, GHITM, GLUD1, FLJ37201, GRID1, HTR7, LIPM, LRIT2, IFIT2, IFIT1, IFIT3, FAS, SH2D4B, C10orf99, SLC16A12, LIPA, MIR107, MAT1A, LINC00863, IFIT1B, MIR346, PANK1, CCSER2, FAM35A, MARCH5, PPP1R3C, NA NA NA NA NA NA NA NA NA LTS-028 RNLS, PTEN, STAMBPL1, ACTA2, RGR, FAM25A, LIPK, LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, TSPAN14, FAM213A, DYDC2, PCGF5, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, CDHR1, OPN4, MINPP1, KIF20B) 0.25077780350245 133 0.0547993356775795 1.06190755758522 5594 0.28102760988979 4 3 1 -6.76725602631585 LTS-028 NA NA NA NA LTS-028 chr10 94112529 105664939 11552411 * c(TLX1NB, C10orf131, PLCE1-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ACTR1A, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, CALHM3, ABCC2, COX15, CPN1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, NA NA NA NA NA NA NA NA NA LTS-028 DNTT, FGF8, NT5C2, PDCD11, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, FFAR4, CYP26C1, IDE, KIF11, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, EXOC6, CCNJ, MARCH5, CNNM2, WBP1L, CRTAC1, CEP55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, FBXW4, SLIT1, SNORA12, TAF5, MIR608, TLL2, ENTPD1-AS1, RPEL1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ARHGAP19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, PDLIM1, NEURL1, LGI1, NOLC1, OPALIN, ENTPD1, SH3PXD2A, ZNF518A) 0.267437260201853 245 0.0521370748454105 1.02887941063466 13828 0.244376445535192 4 3 1 -6.98998433778779 LTS-028 NA NA NA NA LTS-028 chr10 105664940 105727019 62080 * OBFC1 0.172 1 NA 0.810661148614106 15 0.195182869076547 3 3 0 -5.76449406920463 LTS-028 chr10 105727020 105758670 31651 * SLK 0.362 1 NA 0.737995930518013 26 0.190971254381386 3 3 0 -5.76994817821204 LTS-028 chr10 105758671 116881628 11122958 * c(MIR936, MIR2110, MIR4295, ADD3-AS1, MIR4680, MIR4483, MIR4482, SMNDC1, SORCS1, GSTO2, SFR1, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CFAP58, DUSP5, SORCS3, ATRNL1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, MIR609, TCF7L2, TECTB, XPNPEP1, PLEKHS1, CFAP43, SHOC2, CASP7, AFAP1L2, ITPRIP, SMC3, BBIP1, GSTO1, NA NA NA NA NA NA NA NA NA LTS-028 SLK, DCLRE1A) 0.342405937277892 67 0.060982966532845 0.805024356559268 5210 0.202092927528587 3 2 1 -6.77610033467922 LTS-028 NA NA NA NA LTS-028 chr10 116881629 116887315 5687 * ATRNL1 NA 0 NA 0.934 1 NA NA NA NA NA LTS-028 chr10 116887316 119308575 2421260 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.368235454798499 12 0.0432389414834136 0.887476219460751 1500 0.19726614566715 3 2 1 -7.19702917413555 LTS-028 chr10 119308576 122263189 2954614 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.346297113121676 21 0.0524746650888834 0.777678102210605 1620 0.165679886438523 3 2 1 -6.90106942924916 LTS-028 chr10 122263190 122263266 77 * PLPP4 NA 0 NA 0.906 1 NA NA NA NA NA LTS-028 chr10 122263267 134691597 12428331 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, NA NA NA NA NA NA NA NA NA LTS-028 METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.332557865877233 202 0.0862727228630888 0.835834609693201 6422 0.254128348928566 3 2 1 -6.79094793866215 LTS-028 NA NA NA NA LTS-028 chr10 134691598 134692910 1313 * CFAP46 NA 0 NA 0.53 1 NA NA NA NA NA LTS-028 chr10 134692911 134756359 63449 * CFAP46 0.310608147585808 12 0.135535609767882 0.431809776867881 181 0.28257984741617 3 2 1 -6.95197891735196 LTS-028 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.327 1 NA NA NA NA NA LTS-028 chr10 134884462 135237234 352773 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, UTF1, ADGRA1, KNDC1, MTG1) 0.336872861522754 12 0.111400043523195 0.820087736175268 1072 0.19984908676151 3 2 1 -6.73393171399994 LTS-028 chr10 135237235 135381888 144654 * c(CYP2E1, SPRNP1, SPRN, SCART1, SYCE1) 0.3865156659763 13 0.0477588762054789 1.3099283928163 277 0.287847846026679 5 3 2 -6.78414315180156 LTS-028 chr10 135381889 135437421 55533 * c(SPRNP1, SYCE1) NA 0 NA 0.364 1 NA NA NA NA NA LTS-028 chr10 135437422 135473026 35605 * FRG2B 0.342135473029466 7 0.0299221211369337 0.76071794226496 39 0.393610444711818 3 2 1 -6.73444557929985 LTS-028 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.786 1 NA NA NA NA NA LTS-028 chr11 193025 193096 72 * SCGB1C1 0.108 1 NA 0.096 1 NA NA NA NA NA LTS-028 chr11 193097 1013167 820071 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.19421890001704 121 0.075233857626293 0.926734046482928 2973 0.500563159373732 5 4 1 -7.00887409988084 LTS-028 chr11 1013168 1016834 3667 * MUC6 0.301 1 NA 0.92485556541099 37 0.155276035327887 3 3 0 -5.76577932449372 LTS-028 chr11 1016835 1213023 196189 * c(MUC2, MUC6, MUC5B) 0.279772574260401 55 0.0966239543394316 0.988453372796745 553 0.263197017749567 4 3 1 -6.77315974975388 LTS-028 chr11 1213024 1213174 151 * MUC5B 0.451 1 NA 0.997001871416472 3 0.143500290359753 4 4 0 -5.76443674391819 LTS-028 chr11 1213175 1213556 382 * MUC5B 0.400767327129576 16 0.0581371582266167 1.01365163803747 24 0.181811890166175 5 3 2 -6.73357929765796 LTS-028 chr11 1213557 1215698 2142 * MUC5B 0.187 1 NA 0.918192699607414 29 0.125199476304796 3 3 0 -5.76549926514346 LTS-028 chr11 1215699 5776729 4561031 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, TRIM22, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, CTSD, DUSP8, OR52A1, TOLLIP-AS1, OR51F1, PGAP2, OR51B5, OR51V1, H19, MRGPRG-AS1, C11orf21, TRPM5, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, KRTAP5-AS1, NA NA NA NA NA NA NA NA NA LTS-028 OR52B6, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, TRIM6-TRIM34, NAP1L4, NUP98, SLC22A18, SLC22A18AS, UBQLN3, IGF2-AS, TRIM34, TOLLIP, TRIM68, KCNQ1DN, MMP26, CHRNA10, MRPL23, MIR483, RRM1, TSSC2, TRIM21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, MOB2, CARS, TRIM5, SYT8, BRSK2, CD81) 0.193967545114254 181 0.0572360946787076 0.941183480653747 5622 0.259167698271457 4 3 1 -8.09264178395554 LTS-028 NA NA NA NA LTS-028 chr11 5776730 5809383 32654 * c(TRIM22, OR52N4, OR52N5, OR52N1, TRIM5) NA 0 NA 1.51095810009553 40 0.469576033547339 6 NA NA -5.76468462233514 LTS-028 chr11 5809384 18031631 12222248 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, USH1C, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, NA NA NA NA NA NA NA NA NA LTS-028 OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.182704470742016 226 0.0434054412531825 0.90813410620956 11231 0.302172111344474 4 3 1 -9.91934701018473 LTS-028 NA NA NA NA LTS-028 chr11 18031632 18637025 605394 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, LDHAL6A, SERGEF, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.190822378749639 31 0.0434724730602998 0.837205236296762 1135 0.212414094389975 5 4 1 -8.22340057095934 LTS-028 chr11 18637026 30933022 12295997 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, ARL14EP, MUC15, SPTY2D1, TMEM86A, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.18190905380877 75 0.0579260945725882 0.961519440213706 3891 0.235628486622977 4 3 1 -9.01337336614638 LTS-028 chr11 30933023 30937026 4004 * DCDC5 NA 0 NA 0.835 1 NA NA NA NA NA LTS-028 chr11 30937027 47447816 16510790 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, EIF3M, CHRM4, C11orf74, LARGE2, DNAJC24, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, IMMP1L, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, DCDC1, CD82, DKFZp779M0652, C11orf96, ACCSL, NA NA NA NA NA NA NA NA NA LTS-028 ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, DKFZp686K1684, MYBPC3, CCDC73, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, C11orf49, ZNF408, QSER1, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, DEPDC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.180575452378571 127 0.0504744642473535 0.908367991028342 9155 0.278274531877455 4 3 1 -10.3480258442838 LTS-028 NA NA NA NA LTS-028 chr11 47447817 48328644 880828 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.187252328161877 22 0.044443553382121 0.846630088846725 1196 0.200261165194689 4 3 1 -8.67810412721759 LTS-028 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.856102375224503 4 0.104537074762976 3 NA NA -5.76640979179888 LTS-028 chr11 48346420 48346423 4 * character(0) 0.357 1 NA 1.488 1 NA NA NA NA NA LTS-028 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.331488895011282 104 0.0595371837672352 1.48078024180458 191 0.694205169023406 6 4 2 -6.73898159918033 LTS-028 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.807 1 NA NA NA NA NA LTS-028 chr11 48388749 48453787 65039 * character(0) 0.153 1 NA 1.2308943301458 2 0.71064231509248 5 5 0 -5.76494429804374 LTS-028 chr11 48453788 51527695 3073908 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.217958727393297 26 0.0544957302491178 0.901624677719123 470 0.364160625222805 4 3 1 -7.47017864965267 LTS-028 chr11 51527696 51527703 8 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-028 chr11 55035776 55110843 75068 * c(TRIM51HP, TRIM48, OR4A16) 0.262 1 NA 1.50760884060366 11 0.924773495609502 6 6 0 -5.76458608923032 LTS-028 chr11 55110844 55111701 858 * OR4A16 0.288237782376828 17 0.0372264532762579 1.90871376264093 30 0.786708143023098 14 10 4 -6.73341302510453 LTS-028 chr11 55111702 55111722 21 * character(0) NA 0 NA 0.987 1 NA NA NA NA NA LTS-028 chr11 55111723 55136219 24497 * OR4A15 0.239 1 NA 0.948042500721616 13 0.118488017353698 4 4 0 -5.78161508385309 LTS-028 chr11 55136220 56344260 1208041 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR8U8, OR8J3, OR4P4, OR4C15, OR4A15, TRIM51) 0.21454306080235 128 0.0542015686061767 0.97325263011166 990 0.368217022688262 4 3 1 -7.16821825458704 LTS-028 chr11 56344261 56467881 123621 * c(OR5AR1, OR5AP2, OR5M10, OR5M1, OR8U8, OR9G9) 0.455 1 NA 0.944630891477105 111 0.153684267958221 4 4 0 -5.81862365585338 LTS-028 chr11 56467882 56468637 756 * c(OR8U8, OR9G9) 0.317602616947579 16 0.107624346687913 1.16640921269472 30 0.636530245960856 19 13 6 -6.73538915429627 LTS-028 chr11 56468638 56468817 180 * c(OR8U8, OR9G9) 0.202 1 NA 1.6168745965765 8 0.461153193480369 6 6 0 -5.76441020942956 LTS-028 chr11 56468818 82444261 25975444 * c(NAALADL1, KCNE3, MIR708, LOC100129216, TMEM262, LOC100130987, LOC100133315, KCTD21-AS1, MIR1908, MIR1237, MIR548K, MIR4300, MIR3162, MIR3165, MIR3664, TPBGL, RBM14-RBM4, TMX2-CTNND1, ARL2-SNX15, NDUFC2-KCTD14, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4696, MIR4691, MIR4692, MIR4488, IL18BP, DPP3, MIR5579, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, GLYAT, CDK2AP2, TCIRG1, RTN3, PRG3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, NA NA NA NA NA NA NA NA NA LTS-028 DRAP1, TAF6L, SCGB1D2, SCGB1D1, POLD3, CFL1, STARD10, NEU3, YIF1A, EHD1, STIP1, CLP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, PTGDR2, CHRM1, SLCO2B1, CDCA5, RPLP0P2, SLC22A9, SNORD15B, BATF2, SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, HRASLS5, CLNS1A, CNTF, COX8A, CPT1A, XRRA1, C11orf84, CST6, CTNND1, CTSW, GRK2, DDB1, GPHA2, DHCR7, APLNR, B3GNT6, EEF1G, MARK2, CTTN, ESRRA, OR5AK4P, LRRC55, SMTNL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 YPEL4, MED19, FAU, MRPL21, TPCN2, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, FAM181B, MS4A2, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FEN1, FGF3, FGF4, FKBP2, ZP1, SHANK2, KDM2A, ATG2A, GANAB, FAM168A, DTX4, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SNHG1, POLA2, FLRT1, MS4A6E, DEFB108B, PELI3, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, RNF169, CNIH2, ZDHHC24, C11orf86, NUDT8, EML3, TMEM151A, PRDX5, BRMS1, TEX40, CHRDL2, ANAPC15, ZDHHC5, ATL3, TSKU, C2CD3, TKFC, TENM4, DKFZP434K028, LRRC32, B3GAT3, PPP1R14B, TIMM10, MYEOV, BSCL2, NPAS4, GIF, PRPF19, GNG3, SELENOH, AQP11, MAJIN, SLC25A45, NEAT1, OR9G4, LOC283194, LINC00301, P4HA3, PGM2L1, KLHL35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 LOC283214, KCTD21, CCDC88B, TTC9C, SLC22A24, RCOR2, ALG1L9P, AAMDC, MACROD1, SLC43A3, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, MS4A10, OR2AT4, TBX10, RTN4RL2, IGHMBP2, INCENP, INPPL1, FAM111B, TMEM179B, TBC1D10C, DNAJB13, MALAT1, KRTAP5-9, ZFP91-CNTF, KRTAP5-10, SLC22A25, SLC22A10, SPDYC, LIPT2, OR5AK2, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, GPR152, DOC2GP, GUCY2EP, FADS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 FADS3, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, SCGB1D4, LTBP3, MIR130A, MIR139, MIR192, MIR194-2, ARRB1, MAP6, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, OR5B3, MIR326, MYO7A, NDUFC2, NDUFV1, NDUFS8, NUMA1, OMP, OSBP, OVOL1, P2RX3, P2RY2, P2RY6, MS4A13, OR8U8, PAK1, KCNK4, PC, UBXN1, TMX2, GAL, KMT5B, TMEM216, COA4, SLC15A3, MS4A4A, PDE2A, PPME1, CABP2, TRMT112, TMEM138, MRPL48, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RSF1, PGA5, PLCB3, C11orf24, POLR2G, WDR74, MS4A12, MRPL16, SDHAF2, SSH3, TMEM132A, HRASLS2, PPP1CA, LAMTOR1, VPS37C, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, ACER3, PRG2, CDC42BPG, OTUB1, PACS1, SLC22A11, THAP12, GPR137, EMSY, CABP4, CD248, CORO1B, BAD, SCYL1, USP35, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, MS4A7, RAB3IL1, RAB6A, MAP4K2, RAD9A, RARRES3, RBM4, CCND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RELA, DPF2, SNORD15A, ROM1, RPS3, RPS6KB2, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, FAM86C2P, KLC2, TUT1, SIPA1, MRPL11, SLC3A2, KCTD14, C11orf95, SPTBN2, SSRP1, STX3, STX5, SNORA57, MIR611, TCN1, THRSP, SERPING1, TM7SF2, CAPN5, UCP2, UCP3, SCGB1A1, VPS51, MRPL49, UVRAG, ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, WNT11, METTL12, SF1, ZFPL1, LRFN4, AHNAK, ALG8, TMEM223, TMEM109, CCDC86, LBHD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 UQCC3, C11orf80, NARS2, NAA40, ZBTB3, CPSF7, ASRGL1, MOGAT2, TMEM134, MUS81, PAAF1, FOSL1, INTS5, ZFP91, OR10W1, OR10V2P, GDPD5, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, MS4A8, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, DGAT2, MS4A14, RELT, PPFIA1, SLC43A1, LGALS12, TNKS1BP1, SERPINH1, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, AIP, SYT7, SART1, AP5B1, FIBP, SYT12, ACY3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CD5, INTS4, MTA2, GLYATL1, CD6, UBE2L6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, MS4A1, MS4A3, SLC22A6, SLC22A8, NRXN2, LPXN, FADS2, PITPNM1, RIN1, TESMIN, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19, CCS, RCE1) 0.186049921873321 550 0.0535458724555806 0.917099192188262 33738 0.227473730773251 4 3 1 -11.541862333928 LTS-028 NA NA NA NA LTS-028 chr11 82444262 118889375 36445114 * c(NAALAD2, LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, MIR1304, SNORA70E, BACE1-AS, MIR4301, MIR1260B, MIR3920, RAB30-AS1, LOC100506368, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4490, MIR4491, MIR4492, MIR4693, LOC100652768, GRM5-AS1, JRKL-AS1, LOC101054525, RBM7, MPZL2, YAP1, ATP5L, CTSC, ME3, GPR83, PRSS23, TREH, CARD16, TMEM123, APOA5, SLC36A4, FAT3, TRIM64, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, NA NA NA NA NA NA NA NA NA LTS-028 CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, AMOTL1, DEUP1, C11orf65, DDX6, DDX10, DLAT, DLG2, DRD2, MPZL3, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, FDX1, CEP164, ENDOD1, EXPH5, PHLDB1, SIK2, SIK3, BACE1, RAB38, CADM1, PANX1, FUT4, ANGPTL5, ANKK1, RNF214, REXO2, TIMM8B, CHORDC1, RAB30, LINC00900, BCL9L, FOXR1, GRIA4, C11orf54, GRM5, GUCY1A2, BIRC2, BIRC3, HSPB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 APOA1, HTR3A, APOA4, CCDC84, ANKRD42, C11orf53, HEPHL1, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, VSTM5, TRIM77, IZUMO1R, KDM4E, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, KMT2A, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, MTNR1B, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, NOX4, SIDT2, TRAPPC4, HIKESHI, CWC15, PCF11, PGR, FXYD6, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 BTG4, NXPE4, SYTL2, ANKRD49, TTC12, PPP2R1B, C11orf57, PRCP, ELMOD1, KDM4D, TMEM126B, TEX12, TMPRSS4, IFT46, SMCO4, TRIM49, DSCAML1, CEP126, ARHGAP20, USP28, PTS, CREBZF, CARD18, RDX, CCDC90B, CCDC81, AASDHPPT, SCARNA9, RPS25, SCN2B, SCN4B, SDHD, MMP27, TRIM64B, TRIM49C, UBTFL1, CXCR5, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, RPL23AP64, TMEM135, SNORA8, SLN, SNORA18, SNORA40, TAGLN, SNORD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TRPC6, TYR, UPK2, ZBTB16, TAF1D, DYNC2H1, CCDC82, ALG9, PDGFD, CUL5, TMPRSS5, PICALM, FZD4, CASP1, CASP4, CASP5, BCO2, TMEM133, TMPRSS13, TMEM126A, DCUN1D5, MSANTD4, MAML2, BUD13, TMEM25, C11orf70, DIXDC1, CEP295, ZC3H12C, OR7E2P, JRKL, EED, ZPR1, MTMR2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, UBE4A, MED17, CEP57) 0.200302221165205 355 0.0617269890927948 0.891380367643547 21551 0.276339085629627 3 2 1 -10.4657110703199 LTS-028 NA NA NA NA LTS-028 chr11 118889376 118889453 78 * TRAPPC4 NA 0 NA 1.043 1 NA NA NA NA NA LTS-028 chr11 118889454 119103370 213917 * c(MIR3656, HYOU1, DPAGT1, SLC37A4, HINFP, CCDC153, H2AFX, HMBS, TRAPPC4, VPS11, ABCG4, NLRX1, PDZD3, CBL, C2CD2L) 0.324539561834822 12 0.0426209508873917 1.04795648426648 1073 0.238923914170597 3 2 1 -6.95718028070623 LTS-028 chr11 119103371 119142428 39058 * CBL NA 0 NA 0.901 1 NA NA NA NA NA LTS-028 chr11 119142429 129873368 10730940 * c(PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, CHEK1, TIRAP, PANX3, TMEM45B, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, HEPACAM, OAF, FLI1, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, GRIK4, DDX25, HSPA8, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, NA NA NA NA NA NA NA NA NA LTS-028 OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, TECTA, THY1, ZNF202, RNF26, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, MFRP, KIRREL3, RPUSD4, TBRG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 UBASH3B, BARX2, CBL, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.192158028732641 225 0.0574196636856903 0.933319797867491 8908 0.433438744521502 4 3 1 -8.09200599374518 LTS-028 NA NA NA NA LTS-028 chr11 129873369 129939727 66359 * c(APLP2, LINC00167) NA 0 NA 1.084 1 NA NA NA NA NA LTS-028 chr11 129939728 130099039 159312 * c(ZBTB44, APLP2, ST14) 0.0614071679844719 5 0.060511982284503 1.19859008343527 299 0.254004922338875 4 4 0 -7.04155010524211 LTS-028 chr11 130099040 134202036 4102997 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, C11orf44, MIR4697HG, ZBTB44, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.187408549931523 54 0.0409114022880761 0.935434275865689 1926 0.249795412386858 4 3 1 -8.87230535672676 LTS-028 chr11 134202037 134856681 654645 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 0.96970121385142 139 0.197210997833697 4 NA NA -5.87536515693631 LTS-028 chr12 90923 248202 157280 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.308 1 NA 1.08878496814008 47 0.446345007662167 4 4 0 -5.7644578555622 LTS-028 chr12 248203 7654076 7405874 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NA NA NA NA NA NA NA NA NA LTS-028 NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.256196160986574 215 0.0559836774112961 1.06894783772168 9241 0.4390747160596 4 3 1 -6.73622404692169 LTS-028 NA NA NA NA LTS-028 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.973 1 NA NA NA NA NA LTS-028 chr12 7655021 9590665 1935645 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.245968181295183 51 0.0838785443130627 0.997162027279141 2188 0.333370491969173 4 3 1 -6.81034960737061 LTS-028 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.076 1 NA NA NA NA NA LTS-028 chr12 9633155 9717789 84635 * character(0) NA 0 NA 0.104535672811779 92 0.188011299992814 0 NA NA -6.90631362615455 LTS-028 chr12 9717790 10573094 855305 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.25652496494926 36 0.0429697568063865 0.954181094362524 1107 0.302326689776442 4 3 1 -6.81747179546131 LTS-028 chr12 10573095 10573097 3 * KLRC3 NA 0 NA 1.311 1 NA NA NA NA NA LTS-028 chr12 10573098 10588530 15433 * c(KLRC2, KLRC3) 0.312562635088127 4 0.088988295110462 1.69737001769097 63 0.499275304309243 10 7 3 -6.74722170410612 LTS-028 chr12 10588531 10588547 17 * c(KLRC2, KLRC3) NA 0 NA 1.09 1 NA NA NA NA NA LTS-028 chr12 10588548 11138935 550388 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.252027331102766 23 0.0553011875448757 0.986266971247791 612 0.290499972161679 4 3 1 -6.77349841448103 LTS-028 chr12 11138936 11174202 35267 * c(PRH1-PRR4, TAS2R20, TAS2R50, PRB4) 0.086 1 NA 0.998733086271436 41 0.226159462413193 4 4 0 -5.76681710593241 LTS-028 chr12 11174203 11286088 111886 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.119117462184194 32 0.0840832860438713 1.12851298002049 134 0.530790687253679 8 7 1 -6.83976335595505 LTS-028 chr12 11286089 11287271 1183 * c(PRH1-PRR4, TAS2R30, PRB4) 0.23 1 NA 1.02357738301745 21 0.22274602235773 4 4 0 -5.76444837184116 LTS-028 chr12 11287272 12982723 1695452 * c(SMIM10L1, PRH1-PRR4, CDKN1B, BORCS5, CREBL2, ETV6, GPR19, LINC01252, TAS2R42, LRP6, LOH12CR2, DDX47, MANSC1, PRB1, PRB3, PRB4, PRB2, MIR613, BCL2L14, DUSP16, APOLD1) 0.257148046745458 27 0.0402514886206999 1.01629510660662 1037 0.279001938745716 4 3 1 -6.77934557939596 LTS-028 chr12 12982724 14538373 1555650 * c(LOC100506314, EMP1, LINC01559, GRIN2B, RPL13AP20, HEBP1, DDX47, GPRC5D, ATF7IP, FAM234B, MIR614, GSG1, GPRC5A, HTR7P1) 0.250684063149915 17 0.0266288487966584 1.10346221788049 784 0.353470726049782 4 3 1 -6.79613728726553 LTS-028 chr12 14538374 14576597 38224 * ATF7IP NA 0 NA 0.895 1 NA NA NA NA NA LTS-028 chr12 14576598 14720722 144125 * c(ATF7IP, PLBD1) 0.368389421551578 6 0.0336273698049669 0.792264319158549 213 0.130734040052515 3 2 1 -7.10883773279862 LTS-028 chr12 14720723 14720753 31 * PLBD1 NA 0 NA 1.045 1 NA NA NA NA NA LTS-028 chr12 14720754 27788795 13068042 * c(MIR920, MIR4302, LOC100506393, RASSF8-AS1, ABCC9, MIR3974, SLCO1B1, STRAP, RASSF8, HIST4H4, ERP27, AEBP2, LINC00477, ETFRF1, C12orf60, LMNTD1, C12orf77, EPS8, STK38L, FGFR1OP2, SLCO1B3, GUCY2C, GYS2, IAPP, SLCO1B7, SMCO2, ITPR2, KCNJ8, KRAS, LDHB, ARHGDIB, LRMP, ART4, MGP, MGST1, SMCO3, GOLT1B, DERA, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, CASC1, ETNK1, ASUN, H2AFJ, LMO3, CMAS, NA NA NA NA NA NA NA NA NA LTS-028 ARNTL2, PTPRO, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, SKP1P2, C12orf71, SLC15A5, BHLHE41, RERGL, PLBD1, PYROXD1, SPX, SSPN, PPFIBP1, RERG, PLCZ1, CAPZA3, MED21, C2CD5) 0.274310108201051 134 0.0572900278396377 1.03409340087797 6269 0.262011723386879 4 3 1 -6.96568156139653 LTS-028 NA NA NA NA LTS-028 chr12 27788796 27789143 348 * PPFIBP1 0.068 1 NA 1.50589083887201 7 0.830285636450034 6 6 0 -5.76441118389522 LTS-028 chr12 27789144 27789383 240 * PPFIBP1 0.0851842885714764 11 0.0308780592889927 2.81206232852072 23 14.2012444749171 12 11 1 -6.7399881318946 LTS-028 chr12 27789384 27863693 74310 * c(REP15, PPFIBP1) 0.318 1 NA 1.05126291471987 219 0.246927112801506 4 4 0 -5.7648683223352 LTS-028 chr12 27863694 30782598 2918905 * c(MANSC4, OVCH1-AS1, IPO8, OVCH1, ERGIC2, CCDC91, FAR2, PTHLH, KLHL42, MRPS35, TMTC1) 0.261683591314445 28 0.0456239517528345 1.05361407145898 1076 0.279008457300611 4 3 1 -6.74665980158868 LTS-028 chr12 30782599 30782618 20 * IPO8 NA 0 NA 1.973 1 NA NA NA NA NA LTS-028 chr12 30782619 30884458 101840 * c(IPO8, CAPRIN2) 0.224859678469727 10 0.0900768190675788 1.2934588407803 273 0.282823022861097 5 4 1 -6.75294542703191 LTS-028 chr12 30884459 30886531 2073 * CAPRIN2 NA 0 NA 1.95 1 NA NA NA NA NA LTS-028 chr12 30886532 31850425 963894 * c(LINC00941, DDX11-AS1, DENND5B-AS1, DENND5B, DDX11, AMN1, ETFBKMT, TSPAN11, FAM60A, CAPRIN2, FLJ13224) 0.267923003131806 46 0.0684931958255427 1.78272617777416 913 0.503710003480485 7 5 2 -6.79974082190744 LTS-028 chr12 31850426 31850700 275 * AMN1 NA 0 NA 1.475 1 NA NA NA NA NA LTS-028 chr12 31850701 34180172 2329472 * c(DNM1L, RNU6-78P, FGD4, AMN1, SYT10, H3F3C, YARS2, PKP2, KIAA1551, BICD1, ALG10) 0.240100365613614 47 0.0638989865415413 1.34637777743002 1031 0.349792730980402 5 4 1 -6.87429667119057 LTS-028 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.32065132909257 15 0.317783094638615 5 NA NA -5.76441255237223 LTS-028 chr12 38710341 38710523 183 * character(0) 0.209 1 NA 1.17185417401827 3 0.126950121438828 4 4 0 -5.76445744676513 LTS-028 chr12 38710524 51856714 13146191 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, YAF2, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, SLC2A13, LRRK2, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, CNTN1, COL2A1, ASB8, PRICKLE1, BCDIN3D, ALG10B, CPNE8, ANO6, ARID2, CELA1, ABCD2, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, C12orf40, GXYLT1, TMPRSS12, RACGAP1, SENP1, PDZRN4, NA NA NA NA NA NA NA NA NA LTS-028 C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, IRAK4, FKBP11, BIN2, LIMA1, PPHLN1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, KIF21A, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, NCKAP5L, RNY5, HIGD1C, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RPAP3, DNAJC22, ADAMTS20, KMT2D, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, TUBA1C, COX14, ZCRB1, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, SCAF11, DDX23, SLC4A8, DAZAP2) 0.206320354608902 245 0.055393835539023 1.28512974230765 12715 0.354081580181504 5 4 1 -6.83336338246484 LTS-028 NA NA NA NA LTS-028 chr12 51856715 51857366 652 * SLC4A8 NA 0 NA 1.523 1 NA NA NA NA NA LTS-028 chr12 51857367 54423854 2566488 * c(HOTAIR, LOC100652999, HOXC13-AS, ATF7, KRT71, SP7, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, ANKRD33, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, MIR196A2, NA NA NA NA NA NA NA NA NA LTS-028 PCBP2, KRT76, CSAD, ATP5G2, PFDN5, PRR13, CALCOCO1, RARG, C12orf10, ATG101, SCN8A, SP1, TARBP2, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ACVR1B, KRT75, ACVRL1, SLC4A8, ESPL1) 0.212089786737054 85 0.0646519944948094 1.3304285724894 5123 0.299838237168731 5 4 1 -6.73509727225219 LTS-028 NA NA NA NA LTS-028 chr12 54423855 54423950 96 * c(HOXC4, HOXC5, HOXC6) NA 0 NA 1.583 1 NA NA NA NA NA LTS-028 chr12 54423951 54973123 549173 * c(LOC100240734, LOC100240735, MIR3198-2, GTSF1, COPZ1, CBX5, SMUG1, ZNF385A, NCKAP1L, HNRNPA1, HOXC4, HOXC5, HOXC6, ITGA5, LOC400043, FLJ12825, MIR148B, NFE2, PDE1B, GPR84, PPP1R1A, MIR615) 0.16036527880612 12 0.0294386882118814 1.53265437251519 1205 0.433754216637344 7 6 1 -6.86500179831481 LTS-028 chr12 54973124 54973153 30 * PPP1R1A NA 0 NA 1.214 1 NA NA NA NA NA LTS-028 chr12 54973154 57393630 2420477 * c(BLOC1S1-RDH5, CDK2, RNF41, GDF11, CNPY2, PTGES3, BAZ2A, GPR182, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, OR10A7, MYL6B, CS, DGKA, METTL7B, ERBB3, ESYT1, OR6C74, OR6C3, BLOC1S1, SNORD59A, GLS2, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, OR6C2, OR6C4, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, MIP, MMP19, OR9K2, MYL6, NACA, PA2G4, ATP5B, IL23A, PPP1R1A, PRIM1, NEUROD4, RAB5B, RBMS2, NA NA NA NA NA NA NA NA NA LTS-028 RDH5, RPL41, RPS26, IKZF4, GLYCAM1, PMEL, SMARCC2, STAT2, SUOX, SNORD59B, NABP2, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, LACRT, COQ10A, CD63, TESPA1, ZBTB39, PAN2) 0.206611261638518 66 0.0510644297987943 1.30611343594021 4979 0.291734212878094 5 4 1 -6.74378984113371 LTS-028 NA NA NA NA LTS-028 chr12 57393631 57393636 6 * ZBTB39 NA 0 NA 1.492 1 NA NA NA NA NA LTS-028 chr12 57393637 57662265 268629 * c(MIR1228, NXPH4, R3HDM2, NEMP1, STAC3, LRP1, MYO1A, NAB2, NDUFA4L2, SHMT2, STAT6, TAC3, ZBTB39) 0.175 1 NA 1.59418166560294 1376 0.285209592065063 6 6 0 -5.7644177944401 LTS-028 chr12 57662266 57662743 478 * R3HDM2 NA 0 NA 1.24 1 NA NA NA NA NA LTS-028 chr12 57662744 68549313 10886570 * c(AGAP2-AS1, MIR548Z, LOC100506844, TSFM, CTDSP2, CDK4, TMEM5, DCTN2, AVIL, OS9, WIF1, IRAK3, XPOT, MBD6, ARHGEF25, C12orf56, AGAP2, LRIG3, C12orf66, CYP27B1, DDIT3, DTX3, RPSAP52, R3HDM2, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, B4GALNT1, METTL21B, GLI1, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, IFNG, INHBC, KIF5A, FLJ41278, MIRLET7I, MIR26A2, MARS, METTL1, TMBIM4, AVPR1A, CAND1, PPM1H, SRGAP1, NA NA NA NA NA NA NA NA NA LTS-028 TSPAN31, ARHGAP9, SLC26A10, MIR548C, PIP4K2C, HMGA2, INHBE, LLPH, DYRK2, ATP23, SLC16A7, HELB, MARCH9, USP15) 0.218959968524063 112 0.0731830953432242 1.31129079210135 6507 0.309162900009631 5 4 1 -6.77149102645113 LTS-028 NA NA NA NA LTS-028 chr12 68549314 68551685 2372 * IFNG NA 0 NA 0.973 1 NA NA NA NA NA LTS-028 chr12 68551686 69247535 695850 * c(LOC100130075, SNORA70G, LOC100507250, CPM, IFNG, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B) 0.250829363125879 10 0.0458331515147909 1.14242629780683 715 0.273874088529649 4 3 1 -6.77114270677189 LTS-028 chr12 69247536 69247649 114 * CPM NA 0 NA 1.804 1 NA NA NA NA NA LTS-028 chr12 69247650 75678836 6431187 * c(MIR1279, MIR3913-2, MIR3913-1, LOC100507377, CCT2, FRS2, CPSF6, RAB3IP, TPH2, CPM, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, KCNC2, LRRC10, LYZ, CNOT2, TMEM19, ATXN7L3B, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, YEATS4, THAP2, CAPS2, LGR5) 0.227645761882237 37 0.0496058791197499 1.31358885876243 3135 0.317468931048167 5 4 1 -6.83111781337114 LTS-028 chr12 75678837 77157739 1478903 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.207817897807921 17 0.0886332911163613 1.16992877690963 1015 0.522924410535499 5 4 1 -6.79076248515832 LTS-028 chr12 77157740 89814106 12656367 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DUSP6, ZDHHC17, MGAT4C, POC1B, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.209818508092291 54 0.0653424591453049 1.33033495945407 3934 0.361724943608038 5 4 1 -6.73490891774138 LTS-028 chr12 89814107 93793315 3979209 * c(POC1B-GALNT4, KERA, NUDT4, DCN, EPYC, CCER1, LINC01619, POC1B, LINC00936, C12orf74, LUM, LINC00615, PLEKHG7, ATP2B1, CLLU1OS, CLLU1, LOC643339, BTG1, EEA1, GALNT4) 0.208181094318929 17 0.0621982125712534 1.24257910552647 1322 0.340849214978945 5 4 1 -6.8426808946265 LTS-028 chr12 93793316 93795198 1883 * NUDT4 NA 0 NA 0.819967628384719 48 0.309371960906342 3 NA NA -5.7644101891498 LTS-028 chr12 93795199 103562008 9766810 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, MIR5700, PLXNC1, METAP2, NUDT4, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, SLC5A8, FAM71C, RMST, ELK3, UHRF1BP1L, SLC17A8, UTP20, GAS2L3, LINC00485, MRPL42, HAL, APAF1, IGF1, ARL1, LTA4H, MIR135A2, ASCL1, MIR331, MYBPC1, SYCP3, PAH, CCDC53, CEP83, CDK17, SLC25A3, PMCH, PARPBP, DRAM1, VEZT, GOLGA2P5, NA NA NA NA NA NA NA NA NA LTS-028 SCYL2, FGD6, NDUFA12, ANKS1B, CHPT1, TMCC3, NTN4, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TMPO, NR2C1, UBE2N, NUP37, GNPTAB, USP44, CRADD, SOCS2, NR1H4) 0.20870451207706 99 0.0510649482765437 1.26777060504077 6433 0.329164503459875 5 4 1 -6.88468179214391 LTS-028 NA NA NA NA LTS-028 chr12 103562009 103667519 105511 * C12orf42 NA 0 NA 0.897 1 NA NA NA NA NA LTS-028 chr12 103667520 104179516 511997 * c(C12orf42, NT5DC3, STAB2) 0.263104110662698 11 0.0342281117849588 1.06264678905311 552 2.40033114701298 4 3 1 -6.74133749458697 LTS-028 chr12 104179517 104181155 1639 * NT5DC3 NA 0 NA 1.26 1 NA NA NA NA NA LTS-028 chr12 104181156 105759753 1578598 * c(MIR3652, MIR3922, C12orf45, ALDH1L2, KIAA1033, TTC41P, HCFC2, C12orf75, NFYB, EID3, CHST11, NT5DC3, APPL2, TDG, HSP90B1, C12orf73, TXNRD1, GLT8D2, SLC41A2) 0.204680987678071 31 0.054340820118791 1.23018406761631 1719 0.391896084965262 5 4 1 -6.77936606809079 LTS-028 chr12 105759754 105760319 566 * C12orf75 NA 0 NA 1.455 1 NA NA NA NA NA LTS-028 chr12 105760320 110318235 4557916 * c(USP30-AS1, LOC100287944, LOC100505978, MIR4497, CKAP4, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, DAO, ISCU, CORO1C, TCP11L2, MYO1H, ACACB, MMAB, TMEM119, C12orf75, MVK, GLTP, SSH1, RIC8B, SVOP, POLR3B, TRPV4, RFX4, SELPLG, LOC728739, UNG, MTERF2, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B, TMEM263, WSCD2, SART3, NUAK1) 0.188487588071831 102 0.0446082888822529 1.32589806276155 4400 0.96671831217011 5 4 1 -6.854936903115 LTS-028 chr12 110318236 122692025 12373790 * c(LINC01405, SH2B3, LINC00173, MIR1178, PXN-AS1, NRAV, MIR4498, MIR4472-2, MIR4700, ARPC3, CAMKK2, TRAFD1, ERP29, GCN1, SDS, RAB35, CIT, SDSL, IQCD, SPPL3, COX6A1, TMEM120B, WDR66, RAD9B, FAM109A, LINC00934, PPTC7, CCDC63, CCDC60, DTX1, PLBD2, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, CUX2, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, HECTD4, KSR2, GATC, HNF1A-AS1, IFT81, FAM216A, HPD, LINC01089, NA NA NA NA NA NA NA NA NA LTS-028 ACADS, IL31, CFAP73, TMEM233, C12orf76, MSI1, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, P2RX4, P2RX7, PEBP1, GPN3, GLTP, MAPKAPK5-AS1, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, VPS29, PLA2G1B, TPCN1, RHOF, VSIG10, TESC, PPP1CC, PRKAB1, WSB2, PSMD9, PTPN11, PXN, RFC5, BCL7A, RPL6, RPLP0, ATXN2, LHX5, MAP1LC3B2, SUDS3, C12orf43, TBX5, TBX3, HNF1A, MIR620, DDX54, B3GNT4, TCTN1, C12orf49, NAA25, SLC8B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RNF34, ACAD10, BRAP, TCHP, COQ5, HVCN1, RASAL1, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, RITA1, MAPKAPK5, OASL, DYNLL1, SRSF9, HRK, ADAM1A, ANKRD13A, TMEM116, BICDL1, CABP1, MLEC, GIT2, RBM19, RNF10) 0.201873400165629 192 0.0425350560558423 1.27496730307912 12512 0.32091431963076 5 4 1 -6.91026448024054 LTS-028 NA NA NA NA LTS-028 chr12 122692026 123199296 507271 * c(CLIP1-AS1, HCAR2, ZCCHC8, DIABLO, CLIP1, VPS33A, RSRC2, B3GNT4, KNTC1) 0.230676516739388 9 0.0761059203420543 1.16575831256512 946 0.280789002796826 4 3 1 -6.83903993716586 LTS-028 chr12 123199297 123199327 31 * HCAR3 0.185 1 NA 3.721 1 NA NA NA NA NA LTS-028 chr12 123199328 123200768 1441 * HCAR3 0.150681027004211 8 0.0419112582897313 2.02388258579894 50 1.22339802057004 7 6 1 -6.73306293442513 LTS-028 chr12 123200769 123200805 37 * HCAR3 NA 0 NA 1.413 1 NA NA NA NA NA LTS-028 chr12 123200806 124320088 1119283 * c(MIR4304, MIR3908, LOC100507091, MPHOSPH9, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65) 0.206248878027946 28 0.0303889033980407 1.22866209743187 2361 0.264747919367616 5 4 1 -6.80557349320212 LTS-028 chr12 124320089 124322984 2896 * DNAH10 NA 0 NA 1.148 1 NA NA NA NA NA LTS-028 chr12 124322985 133419709 9096725 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-028 CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.2094850344455 153 0.0486298712632983 1.3277794881268 5354 0.332516696478906 5 4 1 -6.7358428511812 LTS-028 NA NA NA NA LTS-028 chr12 133419710 133420534 825 * CHFR NA 0 NA 0.933 1 NA NA NA NA NA LTS-028 chr12 133420535 133811529 390995 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.205760890027975 40 0.0336756779003969 1.23769002627621 976 0.323269307639412 5 4 1 -6.75135588055397 LTS-028 chr12 133811530 133812708 1179 * ANHX NA 0 NA 1.07274796613693 23 0.141588950239909 4 NA NA -5.76441094748104 LTS-028 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.471 1 NA 1.34047155783856 3 0.0737586153159978 5 5 0 -5.76457516247095 LTS-028 chr13 19600476 24881184 5280709 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SPATA13-AS1, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.451532146459517 77 0.0380990228667871 1.04021351670305 2709 0.256260846738386 4 2 2 -6.82777714058757 LTS-028 chr13 24881185 24890050 8866 * c(SPATA13, C1QTNF9) 0.382 1 NA 1.25042396956387 5 0.501110466863345 5 5 0 -5.76450637311712 LTS-028 chr13 24890051 25021235 131185 * c(PARP4, SPATA13, C1QTNF9) 0.315704838703861 12 0.110968839470066 1.28691422733686 98 0.457472781350339 6 4 2 -6.77311100383754 LTS-028 chr13 25021236 25024028 2793 * PARP4 0.477 1 NA 1.12752856526693 5 0.364375493138603 4 4 0 -5.76443568813397 LTS-028 chr13 25024029 25525488 501460 * c(PARP4, TPTE2P6, ATP12A, CENPJ, RNF17, TPTE2P1) 0.45834115161165 24 0.0247367297171928 1.04420023901078 558 0.230228617295276 4 2 2 -6.97789829184011 LTS-028 chr13 25525489 25600109 74621 * TPTE2P1 0.286 1 NA 0.800317562825121 7 0.588800152044494 3 3 0 -5.76447324870278 LTS-028 chr13 25600110 25739404 139295 * PABPC3 0.283877538629906 11 0.122752078301236 1.07262413259227 161 0.581812542381178 4 3 1 -6.75742910347178 LTS-028 chr13 25739405 25739662 258 * character(0) 0.405 1 NA 1.18677868946399 7 0.298515772894275 4 4 0 -5.76442615446037 LTS-028 chr13 25739663 28368814 2629152 * c(CDK8, WASF3, AMER2, USP12, MTIF3, GSX1, LNX2, SNORD102, GPR12, GTF3A, RASL11A, SHISA2, POLR1D, ATP8A2, RNF6, RPL21, SNORA27, MTMR6, NUP58) 0.463578771421821 32 0.0264763284414954 1.07847440852346 1740 0.246425099357939 4 2 2 -7.09405218242019 LTS-028 chr13 28368815 28500226 131412 * PDX1 0 1 NA 1.14387291304015 47 0.881060739578726 4 4 0 -5.76476842968375 LTS-028 chr13 28500227 28973337 473111 * c(PAN3-AS1, CDX2, FLT1, FLT3, PAN3, PDX1, ATP5EP2, URAD) 0.38613474627669 19 0.171896371611211 1.07796072467734 621 0.341941891550346 4 2 2 -6.79665138627655 LTS-028 chr13 28973338 29238576 265239 * c(FLT1, POMP) 0.479 1 NA 1.12642837730895 73 0.186221480711099 4 4 0 -5.77329229775496 LTS-028 chr13 29238577 33347497 4108921 * c(LINC00426, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, FRY, USPL1, N4BP2L2, HSPH1, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, PDS5B, MTUS2, ALOX5AP, SLC46A3, HMGB1, LINC00544, POMP, UBL3, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, N4BP2L1) 0.461837050714022 39 0.0435380144753231 1.0500674633754 2330 0.222812244616633 4 2 2 -6.8840209890317 LTS-028 chr13 33347498 33349107 1610 * PDS5B NA 0 NA 1.194 1 NA NA NA NA NA LTS-028 chr13 33349108 41240456 7891349 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.452001006338807 68 0.048931497869549 1.1394535408002 3129 0.284211787589006 4 2 2 -6.93147766885524 LTS-028 chr13 41240457 53420726 12180270 * c(LINC00462, TPT1-AS1, MIR759, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA LTS-028 CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.457198313453916 154 0.0626808440420946 1.05708061249299 7136 0.672851740526137 4 2 2 -6.77239383710407 LTS-028 NA NA NA NA LTS-028 chr13 53420727 77738664 24317938 * c(MIR1297, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, LINC00381, DIAPH3-AS1, DIAPH3-AS2, MYCBP2-AS1, LINC00348, PIBF1, OLFM4, KLF12, KCTD12, CLN5, DACH1, COMMD6, DIS3, MYCBP2, FBXL3, PCDH17, OR7E156P, LINC00550, LINC00347, LMO7, MZT1, PCDH8, PCDH9, KLHL1, ATXN8OS, CTAGE11P, PCDH20, KLF5, BTF3P11, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, BORA, TDRD3, DIAPH3, TBC1D4) 0.451997448892342 55 0.0711429158673896 1.11746355171636 3007 0.566251612587267 4 2 2 -6.80243084384292 LTS-028 chr13 77738665 78165549 426885 * c(MYCBP2, SCEL) 0 1 NA 1.05143246205879 249 0.239141398613661 4 4 0 -5.76717936373018 LTS-028 chr13 78165550 79887516 1721967 * c(MIR3665, LINC00331, LINC00446, RNF219-AS1, SLAIN1, EDNRB, POU4F1, RNF219, SCEL) 0.355447704266336 10 0.18858195978289 1.06789415136311 528 0.276483309023308 4 2 2 -6.85915166474614 LTS-028 chr13 79887517 79887538 22 * character(0) 0.424 1 NA 0.707 1 NA NA NA NA NA LTS-028 chr13 79887539 114758138 34870600 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR4306, MIR3170, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, LINC00565, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00443, LINC00559, CLDN10-AS1, COL4A2-AS1, NDFIP2-AS1, PCCA-AS1, NALCN-AS1, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, TNFSF13B, SOX21, ADPRHL1, SLITRK1, TEX29, METTL21EP, NA NA NA NA NA NA NA NA NA LTS-028 SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, GPR180, DCT, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, GPC5, RASA3, DZIP1, MYO16, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, GPR18, UBAC2, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, MIR19B1, MIR17HG, ATP4B, PCCA, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, RAP2A, GRK1, RBM26, MIR4500HG, CCDC168, GAS6-AS1, SLC10A2, SLC15A1, SOX1, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, CARS2, GRTP1, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2) 0.452123357067592 213 0.0788869259769177 1.12388564129907 9481 0.284031484393021 4 2 2 -7.16350674989317 LTS-028 NA NA NA NA LTS-028 chr13 114758139 114762066 3928 * RASA3 NA 0 NA 0.97 1 NA NA NA NA NA LTS-028 chr13 114762067 114782779 20713 * RASA3 0.403245330207243 2 0.0982878425849301 1.01427838177926 42 0.209252073618373 5 3 2 -6.7551675460687 LTS-028 chr13 114782780 115092817 310038 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 0.993508733499657 283 0.21416880561241 4 NA NA -5.79125263436537 LTS-028 chr14 19434116 19685516 251401 * c(BMS1P17, POTEG) 0.323 1 NA 0.741177252295439 4 0.429540355108419 3 3 0 -5.77239211736281 LTS-028 chr14 19685517 20404847 719331 * c(OR4N2, OR4K2, OR4Q3, OR4M1, POTEM, OR4K5, OR11H2, OR4K1) 0.304912577762858 10 0.115639285904248 1.6790115733019 201 0.263899919217843 6 4 2 -6.79501847265526 LTS-028 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.991 1 NA NA NA NA NA LTS-028 chr14 20443534 21551069 1107536 * c(SNORD126, PARP2, EDDM3A, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, ANG, SLC39A2, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, RNASE13, PNP, RNASE12, OSGEP, ARHGEF40, NDRG2, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, TEP1, OR4K15, RNASE7, RPPH1, TMEM55B, TTC5) 0.253769567216506 82 0.0469936793817721 1.09514097667612 1966 0.927475110750003 4 3 1 -6.74086547130714 LTS-028 chr14 21551070 21551091 22 * ARHGEF40 NA 0 NA 1.33885571101628 2 0.291327993848857 5 NA NA -5.76441013477904 LTS-028 chr14 21551092 21558558 7467 * c(ZNF219, ARHGEF40) 0.411 1 NA 1.35952591041007 51 0.200772076411703 5 5 0 -5.76443947163919 LTS-028 chr14 21558559 22362971 804413 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, METTL3, RPGRIP1, CHD8, SALL2, TMEM253, SNORD9, RAB2B, TOX4) 0.394209451587865 54 0.044751042837909 1.32450755651881 1454 0.308071628913064 5 3 2 -6.7451728517779 LTS-028 chr14 22362972 22409771 46800 * character(0) 0.221 1 NA 1.20820643424218 43 0.260452164535206 5 5 0 -5.76869268217614 LTS-028 chr14 22409772 22991095 581324 * character(0) 0.251846968789926 23 0.0535476220395169 1.32743475475273 688 0.479814687833024 4 3 1 -6.80892442246723 LTS-028 chr14 22991096 22992443 1348 * character(0) NA 0 NA 1.093 1 NA NA NA NA NA LTS-028 chr14 22992444 31364940 8372497 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, MIR208A, MMP14, MYH6, MYH7, NEDD8, NA NA NA NA NA NA NA NA NA LTS-028 NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, PRKD1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.241229766301998 147 0.0613450371815405 1.08612449198693 7335 0.246605768210821 4 3 1 -6.78814156623403 LTS-028 NA NA NA NA LTS-028 chr14 31364941 64194759 32829819 * c(SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, MIR4503, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, CFL2, FERMT2, AP4S1, WDHD1, BAZ1A, MAP4K5, EGLN3, DTD2, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, MIPOL1, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, NA NA NA NA NA NA NA NA NA LTS-028 TMEM30B, MDGA2, SPTSSA, LINC01599, NID2, ATG14, FKBP3, DAAM1, SAMD4A, FAM179B, KLHDC2, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NKX2-8, GCH1, TIMM9, ATP5S, KCNH5, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, FAM177A1, GPR33, STRN3, ERO1A, HIF1A, FOXA1, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, ARHGAP5, LGALS3, FLJ22447, MGAT2, MIA2, MNAT1, NFKBIA, SIX6, OTX2, PAX9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ATL1, NIN, DACT1, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, EAPP, ACTR10, PSMA3, PSMA6, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, FANCM, PYGL, SNX6, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NPAS3, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SOS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SRP54, SSTR1, STYX, MIR624, NKX2-1, CCDC175, VCPKMT, L2HGDH, NUBPL, DDHD1, SGPP1, TMX1, SYT16, FSCB, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, CDKL1, SLC25A21, NEMF, MAPK1IP1L, AKAP6, KIAA0391, KIAA0586, DLGAP5) 0.248147243168452 263 0.0575688255954055 1.03287830633318 16102 0.30091772369634 4 3 1 -7.12668806955511 LTS-028 NA NA NA NA LTS-028 chr14 64194760 64375735 180976 * SYNE2 NA 0 NA 1.507 1 NA NA NA NA NA LTS-028 chr14 64375736 64867616 491881 * c(ESR2, SYNE2, TEX21P, MTHFD1) 0.26 1 NA 1.23227249936856 915 0.213128405327665 5 5 0 -5.80781213897155 LTS-028 chr14 64867617 66455366 1587750 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, PPP1R36, ZBTB1, FNTB, FUT8, PLEKHG3, GPX2, HSPA2, RAB15, MAX, MTHFD1, FUT8-AS1, SPTB, ZBTB25, CHURC1, AKAP5) 0.263208836472545 15 0.0367129145565712 1.04658893843531 1443 0.22345782776382 4 3 1 -6.75716706585217 LTS-028 chr14 66455367 69847467 3392101 * c(GPHN, VTI1B, RDH12, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ZFYVE26, PLEK2, ARG2, LINC00238, RDH11, ATP6V1D, PIGH, EXD2, GALNT16, PLEKHH1, RAD51B, MPP5, ZFP36L1, ACTN1, DCAF5) 0.201515799775803 37 0.0406677004742322 1.29181967511159 2342 0.288620030218908 5 4 1 -6.78162661162051 LTS-028 chr14 69847468 69853356 5889 * ERH NA 0 NA 0.913 1 NA NA NA NA NA LTS-028 chr14 69853357 73989983 4136627 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, ERH, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, PLEKHD1, MAP3K9, COX16, ZFYVE1, SYNJ2BP, SLC39A9, PSEN1, CCDC177, RBM25, SMOC1, SRSF5, SLC8A3, SLC10A1, DPF3, NUMB, ADAM21, ADAM20, PAPLN, RGS6, SUSD6) 0.260166644880281 58 0.055539233637846 1.04084593927663 3160 0.258316294124305 4 3 1 -6.77846095256357 LTS-028 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.074 1 NA NA NA NA NA LTS-028 chr14 74003792 74010468 6677 * c(HEATR4, ACOT1) NA 0 NA 0.232884958787645 40 0.287070025183707 1 NA NA -5.76742775411603 LTS-028 chr14 74010469 74534235 523767 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, HEATR4, ALDH6A1, COQ6, ZNF410, ACOT1, ACOT6, BBOF1, DNAL1, ELMSAN1, PNMA1, ENTPD5) 0.278220792440685 6 0.0298222512005158 0.98725681646375 1134 1.4480360181184 7 5 2 -6.88784453615164 LTS-028 chr14 74534236 103373795 28839560 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1260A, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR4709, MIR2392, DIO2-AS1, MIR5698, LINC00911, FBLN5, BATF, NPC2, AHSA1, CYP46A1, PAPOLA, TMED10, PTPN21, FOXN3, CHGA, C14orf1, IFT43, SERPINA3, ANKRD9, AK7, IFI27L1, NOXRED1, JDP2, ISCA2, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, NA NA NA NA NA NA NA NA NA LTS-028 PRIMA1, LRRC74A, ISM2, CEP128, TTC7B, SYNE3, SAMD15, EML5, DIO2, DIO3, DLST, DYNC1H1, EML1, ESRRB, VASH1, SNW1, TTLL5, RCOR1, ANGEL1, DICER1, FOS, FLRT2, LINC00521, SERPINA11, GALC, TMEM251, TCL6, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, VSX2, COX8C, IFI27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ITPK1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, LTBP2, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, ALDH6A1, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, FCF1, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, PGF, SERPINA1, SERPINA4, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, VRTN, PPP2R5C, MEG3, FLVCR2, GPATCH2L, PPP4R3A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 BTBD7, TDP1, ZNF839, SPATA7, YLPM1, LGMN, KCNK13, C14orf132, PSMC1, DDX24, ADCK1, TMEM63C, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, NGB, ABCD4, MOK, MIR487A, BDKRB1, BDKRB2, VIPAS39, SEL1L, MOAP1, IRF2BPL, SYNDIG1L, BCL11B, MIR539, MIR376A2, MIR487B, SNORA79, MIR411, TGFB3, TRAF3, MIR654, MIR655, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR656, TSHR, LINC01220, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, ZC2HC1C, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, BBOF1, GPR68, TCL1A, SLIRP, RPS6KL1, IFI27L2, SETD3, HHIPL1, GON7, GPR65, STON2, CIPC, SERPINA6, DLK1, CCNK, ALKBH1, EIF2B2, FAM181A, EFCAB11, LIN52, NEK9, WDR20, RPS6KA5, TRIP11, NRXN3, SPTLC2, TCL1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ACYP1, AREL1, TECPR2, GOLGA5) 0.254528335123196 346 0.0587416144140521 1.0495738852758 19311 0.250237408477622 4 3 1 -6.92660395953773 LTS-028 NA NA NA NA LTS-028 chr14 103373796 106311988 2938193 * c(ZBTB42, LINC00605, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, EIF5, ELK2AP, AKT1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, TMEM121, AMN, APOPT1, BTBD6, MTA1, EXOC3L4, BAG5, C14orf2, NA NA NA NA NA NA NA NA NA LTS-028 CDC42BPB) 0.258782955679155 134 0.0781090445271423 1.10028791127977 4839 0.313791634277482 4 3 1 -6.74058720057468 LTS-028 NA NA NA NA LTS-028 chr14 106311989 106318194 6206 * character(0) NA 0 NA 0.754 1 NA NA NA NA NA LTS-028 chr14 106318195 107283157 964963 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.237622376948852 25 0.0557164547807318 1.00974490406661 549 0.355432998743132 4 3 1 -6.84019210126176 LTS-028 chr15 20169987 20446043 276057 * character(0) 0.333 1 NA 0.830311536484681 23 0.216515716140811 3 3 0 -5.76517200997082 LTS-028 chr15 20446044 20457319 11276 * character(0) 0.227664160912206 13 0.132557437961717 0.684221153433274 39 0.36175032957092 5 4 1 -6.76832146764843 LTS-028 chr15 20457320 20462585 5266 * character(0) 0.328 1 NA 0.922344717935564 5 0.199765362362948 3 3 0 -5.76554610103716 LTS-028 chr15 20462586 20876515 413930 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.3485840886163 9 0.132482493602404 0.864780182628805 57 0.325142592586367 3 2 1 -6.74212220252151 LTS-028 chr15 20876516 21933006 1056491 * c(POTEB, LINC01193, NF1P2, NBEAP1, LOC646214) 0.013 1 NA 0.99544311509959 9 0.443247986772391 4 4 0 -5.78478013062858 LTS-028 chr15 21933007 28412872 6479866 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-028 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, MIR4508, MIR4715, POTEB, TUBGCP5, NIPA1, PWAR1, CYFIP1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, OR4N4, GOLGA6L1, GOLGA8IP, SNORD109B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, OR4M2, OR4N3P, HERC2P2, NF1P2, GOLGA6L22, NDN, OCA2, LINC00929, MAGEL2, ATP10A, LOC646214, CXADRP2, REREP3, GOLGA8S, SNRPN, SNORD116-19, LOC727924, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.0220519114930801 58 0.0123952843130056 0.847402969016876 2522 0.299582918588434 3 3 0 -6.79926229672808 LTS-028 NA NA NA NA LTS-028 chr15 28412873 28517436 104564 * HERC2 0.397 1 NA 0.823071077530142 181 0.178070944125662 3 3 0 -5.7644796371864 LTS-028 chr15 28517437 29413377 895941 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.0659298239752741 9 0.079936085579529 0.78259738048478 240 0.282181760339326 3 3 0 -6.90774556785825 LTS-028 chr15 29413378 29413655 278 * FAM189A1 0.013 1 NA 1.04809926705889 5 0.612020669585595 4 4 0 -5.7644104836834 LTS-028 chr15 29413656 30502912 1089257 * c(FAM189A1, DKFZP434L187, NSMCE3, GOLGA8T, TJP1) 0.0176733867606702 4 0.00618465843842649 0.811615151600068 432 0.223918559838692 3 3 0 -7.28923390121783 LTS-028 chr15 30502913 30665163 162251 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.0560808563064253 48 0.112916131479195 0 NA NA -6.62287842948673 LTS-028 chr15 30665164 30665252 89 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.798 1 NA NA NA NA NA LTS-028 chr15 30665253 30926584 261332 * c(DKFZP434L187, CHRFAM7A, ARHGAP11B) 0.077 1 NA 0.637798178236551 42 0.2307397951759 2 2 0 -5.81587504152746 LTS-028 chr15 30926585 34113010 3186426 * c(WHAMMP1, LOC100288637, TMCO5B, LOC100996255, CHRNA7, OTUD7A, FAN1, GREM1, LOC283710, FMN1, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, RYR3, SCG5, GOLGA8O, ARHGAP11B, ARHGAP11A) 0.0270529495890004 45 0.0149445777471431 0.814222202218482 1969 0.236654473936688 3 3 0 -6.76026792204537 LTS-028 chr15 34113011 34113054 44 * RYR3 0.02 1 NA 1.1393094957619 3 0.790973450881886 4 4 0 -5.76441026120456 LTS-028 chr15 34113055 35081106 968052 * c(MIR1233-2, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GOLGA8B, EMC4, NOP10, EMC7, AVEN, GJD2, RYR3, ACTC1, KATNBL1, SLC12A6) 0.0452086379098679 6 0.0186940275667569 0.784665914375566 998 0.742426392462197 2 2 0 -7.02561954718526 LTS-028 chr15 35081107 35375874 294768 * c(ZNF770, ACTC1, AQR) 0.332755264031957 3 0.221991741588135 1.07049878486648 373 0.279251329856172 4 3 1 -6.79851450479649 LTS-028 chr15 35375875 35385434 9560 * character(0) 0.006 1 NA 0.78171307707639 13 0.460335774887229 3 3 0 -5.76446648156472 LTS-028 chr15 35385435 35834730 449296 * c(MIR3942, ANP32AP1, DPH6) NA 0 NA 1.04794935739991 101 0.368321761507517 4 NA NA -5.76598883150022 LTS-028 chr15 35834731 35838207 3477 * DPH6 NA 0 NA 0.645 1 NA NA NA NA NA LTS-028 chr15 35838208 42861567 7023360 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR4310, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, OIP5, PLA2G4E, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, EXD1, FSIP1, RHOV, BAHD1, MAPKBP1, RTF1, MGA, VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, FAM98B, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, EIF2AK4, NDUFAF1, NUSAP1, SPTBN5, PLCB2, DLL4, NA NA NA NA NA NA NA NA NA LTS-028 INO80, PPP1R14D, HAUS2, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, OIP5-AS1, TYRO3, CHAC1, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF) 0.0229951881237089 170 0.0144798057823991 0.805822254064317 7739 0.244689337801384 3 3 0 -6.75175153521133 LTS-028 NA NA NA NA LTS-028 chr15 42861568 43317071 455504 * c(TTBK2, CDAN1, UBR1, HAUS2, STARD9) 0.055 1 NA 0.811078632906332 831 0.150713464782651 3 3 0 -5.76533132149792 LTS-028 chr15 43317072 45117968 1800897 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, ZSCAN29, STRC, ADAL, UBR1, PATL2, EPB42, CCNDBP1, HYPK, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, FRMD5, EIF3J, TGM5, PPIP5K1, LCMT2) 0.100785559565437 4 0.142469879857697 0.797532591421741 3178 0.189538827147119 3 3 0 -6.92246535929956 LTS-028 chr15 45117969 45118037 69 * character(0) 0.025 1 NA 0.07 1 NA NA NA NA NA LTS-028 chr15 45118038 45119201 1164 * character(0) 0.0585118657866833 9 0.0474578760586691 0.221211380773874 34 0.21934068276511 1 1 0 -6.74709140383309 LTS-028 chr15 45119202 45119384 183 * character(0) NA 0 NA 0.0737766441817384 5 0.0507070014889463 0 NA NA -5.78148883125303 LTS-028 chr15 45119385 45120601 1217 * character(0) NA 0 NA 0.943 1 NA NA NA NA NA LTS-028 chr15 45120602 45361180 240579 * c(TERB2, SORD) 0.369 1 NA 0.754806336964394 113 0.208876156455871 3 3 0 -5.78585544760749 LTS-028 chr15 45361181 45366540 5360 * SORD 0.401399989584913 12 0.0333216646242851 1.36341779679022 36 1.26461269903929 5 3 2 -6.73351677624111 LTS-028 chr15 45366541 45567568 201028 * c(DUOXA2, DUOX2, DUOX1, SORD, SHF, DUOXA1, SLC28A2) 0.02 1 NA 0.841558400581957 653 0.16371391322878 3 3 0 -5.76797151775146 LTS-028 chr15 45567569 48787470 3219902 * c(MIR147B, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, MYEF2, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SLC28A2) 0.0350972758511553 4 0.0110867789130417 0.832431589023952 1676 0.202212604880993 3 3 0 -7.30310968557353 LTS-028 chr15 48787471 66188199 17400729 * c(GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, NDUFAF4P1, MIR2116, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4511, MIR4712, PDCD7, MYZAP, ADAM10, DENND4A, GNB5, ARPP19, CLPX, SLC27A2, LACTB, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, FAM227B, MGC15885, FBN1, FGF7, CEP152, ZNF609, DMXL2, AP4E1, DAPK2, EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, NA NA NA NA NA NA NA NA NA LTS-028 FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, USP50, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, LIPC, SHC4, MIR190A, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, FLJ10038, MNS1, MYO5C, MAPK6, FAM214A, DTWD1, IGDCC4, RAB27A, RORA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RFX7, BNIP2, SNX1, HSP90AB4P, MIR628, TCF12, TPM1, CA12, ICE2, SLTM, SNX22, ATP8B4, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, SPPL2A, CGNL1, RAB11A, ALDH1A2, HERC1, USP8, CCNB2, SLC24A1, CCPG1, GCNT3, LDHAL6B, COPS2, TRIP4, PIGB, IGDCC3, SECISBP2L, KIAA0101, USP3) 0.0235753401592665 259 0.01749682475245 0.793358212570614 14749 0.231717169835043 3 3 0 -6.91272118611135 LTS-028 NA NA NA NA LTS-028 chr15 66188200 72226121 6037922 * c(NR2E3, MIR548H4, MIR4311, MIR4312, IQCH-AS1, FEM1B, SNAPC5, CORO2B, DIS3L, DRAIC, C15orf61, CT62, LCTL, ITGA11, SPESP1, GLCE, EWSAT1, SKOR1, SMAD3, SMAD6, LINC00593, MYO9A, LRRC49, PAQR5, TIPIN, CLN6, ZWILCH, UACA, LARP6, MAP2K1, MAP2K5, THAP10, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, RPLP1, IQCH, SCARNA14, MIR629, TLE3, NOX5, AAGAB, THSD4, ANP32A-IT1, ANP32A, MEGF11, PIAS1, CALML4, KIF23) 0.0226993670831606 70 0.0142433813767475 0.837484512900022 4333 0.224422383450052 3 3 0 -6.77611486906321 LTS-028 chr15 72226122 72227669 1548 * MYO9A NA 0 NA 1.443 1 NA NA NA NA NA LTS-028 chr15 72227670 72612621 384952 * c(SENP8, GRAMD2, MYO9A, PKM, PARP6, CELF6) 0.0125668050205153 4 0.00805708797684788 1.14148612057297 471 0.254027853110338 5 5 0 -6.86089626251162 LTS-028 chr15 72612622 72635788 23167 * c(HEXA, CELF6) NA 0 NA 0.706 1 NA NA NA NA NA LTS-028 chr15 72635789 90969483 18333695 * c(DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR4313, NA, UBE2Q2L, LINC00933, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, AP3S2, HMG20A, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, HIGD2B, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, CSK, HAPLN3, MESP2, NRG4, NA NA NA NA NA NA NA NA NA LTS-028 LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ACAN, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, GABARAPL3, LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, FBXO22, MRPL46, NPTN, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, ANPEP, HEXA, TMEM202, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ZNF774, ARPIN, IL16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, ZNF710, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, GDPGP1, ADAMTS7P1, ST20, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2C1, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, NEO1, NMB, NTRK3, SCAPER, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, DET1, FANCI, IMP3, DNAJA4, GOLGA6B, MESP1, PSMA4, C15orf39, WDR93, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, CELF6, STRA6, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, ISL2, EFTUD1P1, MRPS11, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR630, MIR631, AGBL1-AS1, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, HEXA-AS1, CCDC33, EDC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 WDR61, CD276, STARD5, AP3B2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PEX11A, IQGAP1, TICRR, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, ARNT2) 0.0239051362962161 255 0.0213997816850541 0.828128953034543 15450 0.388809985143161 3 3 0 -6.74358266171681 LTS-028 NA NA NA NA LTS-028 chr15 90969484 93750953 2781470 * c(LINC00930, MIR3175, PRC1-AS1, LINC01578, CHD2, C15orf32, FES, VPS33B, SLCO3A1, HDDC3, FAM174B, MAN2A2, FURIN, UNC45A, RGMA, BLM, CRTC3, ASB9P1, ST8SIA2, IQGAP1, PRC1, RCCD1, SV2B) 0.0157582438354286 66 0.00882913433206297 1.07021168769233 2521 0.326409535976785 4 4 0 -6.7776871594852 LTS-028 chr15 93750954 94886579 1135626 * MCTP2 0.45 1 NA 1.09868079797689 115 0.317148619233826 4 4 0 -5.76687657473891 LTS-028 chr15 94886580 98420863 3534284 * c(MIR1469, SPATA8-AS1, LINC00924, SPATA8, LINC01197, LOC440311, MCTP2, NR2F2-AS1, NR2F2, LINC00923) 0.0164820764338881 9 0.0116308975482453 1.23626617012658 387 0.408087133104939 5 5 0 -6.82618365226364 LTS-028 chr15 98420864 98420879 16 * character(0) 0.006 1 NA 3.301 1 NA NA NA NA NA LTS-028 chr15 98420880 102224341 3803462 * c(LOC100507472, MIR4714, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3, ARRDC4) 0.0204173295884729 107 0.0140405614397714 1.05882655745527 2739 0.424247867256281 4 4 0 -6.75262491103445 LTS-028 chr15 102224342 102249178 24837 * TARSL2 0.007 1 NA 1.11652017679914 35 0.576652131420902 4 4 0 -5.76446563341796 LTS-028 chr15 102249179 102312835 63657 * TARSL2 0.252764137936461 9 0.20814358025171 1.17596592285007 85 0.33393418060269 4 3 1 -6.73617664834009 LTS-028 chr15 102312836 102516544 203709 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) NA 0 NA 1.13475117968553 79 0.194104943224267 4 NA NA -5.77296465103719 LTS-028 chr16 81704 111736 30033 * c(POLR3K, RHBDF1, SNRNP25) 0.257 1 NA 1.15074810557076 149 0.305330484538772 4 4 0 -5.76523640159683 LTS-028 chr16 111737 1129010 1017274 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, ARHGDIG, MPG, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3 NA NA NA NA NA NA NA NA NA LTS-028 ) 0.233930569731167 84 0.0592123961684669 1.13204764586999 3118 0.29430164351657 4 3 1 -6.85620528321508 LTS-028 NA NA NA NA LTS-028 chr16 1129011 1257731 128721 * c(C1QTNF8, SSTR5, CACNA1H) 0.31 1 NA 1.02470475133727 169 0.235819645608676 4 4 0 -5.76796672543708 LTS-028 chr16 1257732 2260612 1002881 * c(MIR1225, MIR3177, MIR3180-5, MIR4516, NUBP2, TBL3, TSR3, CLCN7, NOXO1, RNF151, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, MSRB1, PKD1, SNORA10, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, TPSB2, CCDC154, HS3ST6, UNKL, LINC00254, MRPS34, SNORA78, TPSAB1, TSC2, UBE2I, SNHG9, TMEM204, FAHD1, TRAF7, GNPTG, CACNA1H, NA NA NA NA NA NA NA NA NA LTS-028 BAIAP3, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.258591973951806 105 0.0764979925040053 1.10084581338998 3719 0.261355289539646 4 3 1 -6.73695600403777 LTS-028 NA NA NA NA LTS-028 chr16 2260613 2264719 4107 * c(BRICD5, PGP) NA 0 NA 1.27300910480573 37 0.169633667298332 5 NA NA -5.76461994474625 LTS-028 chr16 2264720 2273564 8845 * PGP NA 0 NA 0.718 1 NA NA NA NA NA LTS-028 chr16 2273565 2285357 11793 * E4F1 0.387 1 NA 0.856084076975427 81 0.158657563736697 3 3 0 -5.76498566719729 LTS-028 chr16 2285358 2653194 367837 * c(MIR940, MIR3178, MIR3677, MIR4717, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, NTN3, AMDHD2, PDPK1, ATP6V0C, TBC1D24, ABCA17P, CEMP1, C16orf59, CCNF) 0.355068404371853 4 0.0412664108769671 0.834699334037876 868 0.173007200159297 3 2 1 -6.80369473072351 LTS-028 chr16 2653195 2747930 94736 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.601134435136285 84 0.359615462655692 2 NA NA -5.76678738771284 LTS-028 chr16 2747931 3077712 329782 * c(SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, CLDN6, CLDN9, PKMYT1) 0.314036268846038 30 0.117650954634617 0.875352463911901 991 0.44957703118689 3 2 1 -6.76912904498573 LTS-028 chr16 3077713 3078042 330 * c(BICDL2, THOC6) NA 0 NA 0.628 1 NA NA NA NA NA LTS-028 chr16 3078043 3777156 699114 * c(LOC100128770, MTRNR2L4, ZNF263, TRAP1, CREBBP, ZNF597, BICDL2, DNASE1, NLRC3, CLUAP1, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NAA60, ZNF205-AS1, SLX4, ZSCAN10, TIGD7, IL32) 0.309444831138595 62 0.0747974242876281 0.794315294401763 1672 0.179491141876769 3 2 1 -6.85019197837501 LTS-028 chr16 3777157 8619853 4842697 * c(LINC01569, NAGPA-AS1, CORO7-PAM16, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf89, C16orf71, EEF2KMT, MGRN1, ZNF500, TMEM114, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, RBFOX1, PPL, ALG1, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.326263399857997 38 0.0739158964225861 0.861187812201872 2492 0.18502759047559 3 2 1 -6.97178714815067 LTS-028 chr16 8619854 8858800 238947 * c(ABAT, TMEM114, METTL22) NA 0 NA 1.19761247082977 131 0.368842563329914 4 NA NA -5.77607343374868 LTS-028 chr16 8858801 8859940 1140 * ABAT NA 0 NA 0.827 1 NA NA NA NA NA LTS-028 chr16 8859941 28608421 19748481 * c(MIR365A, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, MIR548AA2, LCMT1-AS2, MIR4718, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, RMI2, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, TEKT5, GSG1L, ITPRIPL2, C16orf82, ABAT, NSMCE1, EMP2, PDILT, ERCC4, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, CLEC16A, NA NA NA NA NA NA NA NA NA LTS-028 NOMO1, CARHSP1, IL27, MPV17L, PDZD9, ANKS4B, TMEM186, RSL1D1, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, BCAR4, KNOP1, CRYM-AS1, FLJ21408, NOMO3, CIITA, ABCC1, MYH11, NUBP1, NDUFAB1, IL21R, PARN, TXNDC11, METTL9, BFAR, LCMT1, GDE1, GPRC5B, SYT17, PLK1, PMM2, RRN3, NDE1, ACSM5, ARHGAP17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 CPPED1, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, PRM1, PRM2, C16orf62, TMEM159, LYRM1, MIR193B, USP31, MKL2, PRM3, RBBP6, TNFRSF17, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, NPIPA3, ABCC6P1, LOC653786, SULT1A2, MIR548D2, TNP2, CLEC19A, SHISA9, ABCC6P2, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, TVP23A, USP7, PALB2, KDM8, TMC5, TMC7, ATF7IP2, LOC81691, SNN, PLA2G10, DCTN5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SOCS1, C16orf45, COG7, SNX29, NPIPA1, LITAF, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.340101835505652 214 0.0615726796522428 0.815622008033096 12890 0.195311329326131 3 2 1 -6.73630454697944 LTS-028 NA NA NA NA LTS-028 chr16 28608422 28616882 8461 * character(0) NA 0 NA 0.527 1 NA NA NA NA NA LTS-028 chr16 28616883 28734890 118008 * SULT1A1 0.300996453753161 10 0.100176788174152 0.604849825127732 96 0.402472590191262 3 2 1 -6.86743313491368 LTS-028 chr16 28734891 28834303 99413 * character(0) NA 0 NA 0.929 1 NA NA NA NA NA LTS-028 chr16 28834304 30199812 1365509 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, CDIPT, CORO1A, PRRT2, ATXN2L, TMEM219, C16orf92, ALDOA, QPRT, KCTD13, ASPHD1, SH2B1, SEZ6L2, LAT, C16orf54, INO80E, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, ATP2A1, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A3, TBX6, TUFM, GDPD3, PAGR1, RABEP2, SLC7A5P1, YPEL3, FAM57B, SPNS1, DOC2A, HIRIP3, NFATC2IP, CD19, TAOK2, MVP) 0.32927329251697 27 0.0700439422516598 0.832823675126369 2469 0.176844313948569 3 2 1 -6.75836096582599 LTS-028 chr16 30199813 30362327 162515 * c(SLX1B-SULT1A4, CD2BP2, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, SMG1P5, LOC606724, LOC613037, LOC613038) NA 0 NA 0.472311848534642 40 0.217753942529589 2 NA NA -5.8216392943596 LTS-028 chr16 30362328 31575344 1213017 * c(MIR762, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, SRCAP, STX1B, ZNF689, COX6A2, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, SEPHS2, ZNF629, FUS, TBC1D10B, PYDC1, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, PRSS8, FBRS, C16orf58, SLC5A2, ZNF747, SNORA30, STX4, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, ZNF768, ZNF668, ARMC5, NA NA NA NA NA NA NA NA NA LTS-028 HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.336471341405904 30 0.0686096404204299 0.826296061450266 3858 0.170684243973659 3 2 1 -6.73820562286759 LTS-028 NA NA NA NA LTS-028 chr16 31575345 31993381 418037 * c(CLUHP3, ZNF267, ZNF720, YBX3P1) 0.468 2 0.0212132034355964 0.685825218733591 259 0.161030240946527 2 1 1 -7.88198435893504 LTS-028 chr16 31993382 32001760 8379 * character(0) NA 0 NA 0.949 1 NA NA NA NA NA LTS-028 chr16 32001761 33961304 1959544 * c(SLC6A10P, LOC390705, NA, LINC00273, TP53TG3D) 0.345991874500654 17 0.110351976980611 0.93859840739773 213 0.314896915741686 3 2 1 -6.94969399607864 LTS-028 chr16 33961305 33961334 30 * LINC00273 0.233 1 NA 2.974 1 NA NA NA NA NA LTS-028 chr16 33961335 33962387 1053 * LINC00273 0.330551527995266 67 0.104946487623866 1.22972620784089 92 0.478482648470894 6 4 2 -6.73567548605403 LTS-028 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.936 1 NA NA NA NA NA LTS-028 chr16 33965501 34301406 335906 * character(0) 0.223475995766307 2 0.289206673505298 0.736881246374988 72 0.312022545118092 3 2 1 -6.85331600223689 LTS-028 chr16 34301407 34682380 380974 * c(LINC01566, UBE2MP1) NA 0 NA 0.810120733251999 59 0.223937033241063 3 NA NA -5.76485977218681 LTS-028 chr16 46508169 46657891 149723 * c(ANKRD26P1, SHCBP1) 0.359 1 NA 0.800677388549201 199 0.198597433548754 3 3 0 -5.76547827709629 LTS-028 chr16 46657892 68732956 22075065 * c(CDH3, CDH5, MIR3935, LINC00919, LINC00920, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NUDT21, ADCY7, CMTM1, NRN1L, CMTM3, C16orf78, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, CYLD, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, CES3, ARL2BP, ORC6, EDC4, PLA2G15, CNEP1R1, NA NA NA NA NA NA NA NA NA LTS-028 PLEKHG4, DKFZP434H168, LRRC29, AMFR, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, MT1DP, HSD11B2, HSF4, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, FAM96B, TPPP3, CES1P1, PHKB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 POLR2C, PRMT7, DUS2, LPCAT2, HEATR3, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, VPS35, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNORA46, SNORA50A, TK2, CA7, FTO, IRX6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 IRX3, FAM65A, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, ITFG1, GFOD2, NETO2, LONP2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, MT4, GPT2, B3GNT9, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.337057026085346 248 0.0629703811666295 0.817097433265109 14581 0.402672587137254 3 2 1 -6.7356832141684 LTS-028 NA NA NA NA LTS-028 chr16 68732957 68771023 38067 * CDH3 NA 0 NA 1.259 1 NA NA NA NA NA LTS-028 chr16 68771024 68849479 78456 * CDH1 NA 0 NA 1.1630566411409 58 0.267185146104439 4 NA NA -5.76821905002852 LTS-028 chr16 68849480 70796515 1947036 * c(SNORD111B, VAC14-AS1, MIR1538, MIR1972-1, SMG1P7, LOC100506083, NFAT5, WWP2, DDX19B, EXOSC6, IL34, TMED6, AARS, NQO1, FUK, SF3B3, COG4, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, CHTF8, PDPR, DDX19A, VAC14, PDF, ST3GAL2, SNTB2, SNORD111, TERF2, TANGO6, CYB5B, COG8, UTP4, MTSS1L, CDH1) 0.315582994138475 51 0.0787741273341375 0.813707547713874 2812 0.195150195959001 3 2 1 -6.79638895577737 LTS-028 chr16 70796516 70884524 88009 * c(VAC14-AS1, HYDIN, VAC14) 0.463 1 NA 0.857019032397147 143 0.195955920908333 3 3 0 -5.76736229275318 LTS-028 chr16 70884525 70889080 4556 * HYDIN NA 0 NA 0.803754796962865 4 0.175373886311503 3 NA NA -5.76443835678066 LTS-028 chr16 70889081 71163714 274634 * HYDIN 0.450881493401012 72 0.0608384813565519 0.963834840729038 475 0.198550165223172 4 2 2 -6.79649804216894 LTS-028 chr16 71163715 71165239 1525 * HYDIN NA 0 NA 0.717 1 NA NA NA NA NA LTS-028 chr16 71165240 71237702 72463 * HYDIN 0.425010227779483 10 0.0609944441914362 0.862825338204032 94 0.280381280463275 4 2 2 -6.80872283362386 LTS-028 chr16 71237703 71264523 26821 * HYDIN 0.314 1 NA 0.77049022142566 5 0.317046999670396 3 3 0 -5.7649881052562 LTS-028 chr16 71264524 87436842 16172319 * c(LOC100129617, SYCE1L, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4719, MIR5093, CDH13, CLEC3A, CHST4, MPHOSPH6, EMC8, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, COX4I1, SLC38A8, FLJ30679, LOC146513, CTRB1, ADAD2, ZFP1, AP1G1, ADAMTS18, DHODH, LINC00311, LDHD, MLKL, MON1B, FOXF1, FOXL1, FOXC2, PHLPP2, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NA NA NA NA NA NA NA NA NA LTS-028 NUDT7, OSGIN1, HP, HPR, HSBP1, HSD17B2, FAM92B, IRF8, ATXN1L, PKD1L3, KARS, LOC400548, FENDRR, C16orf74, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, GINS2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, HYDIN, TXNL4B, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, VAT1L, TLDC1, WFDC1, MTHFSD, TAT, SNORD71, LINC00917, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, MAP1LC3B, PMFBP1, DYNLRB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 HSDL1, CRISPLD2, ZNRF1, CNTNAP4, MBTPS1, TAF1C, USP10, MARVELD3, KCNG4, SDR42E1, BCAR1, KIAA0513, DHX38, IST1, ATP2C2) 0.339255377718067 275 0.0652002580997249 0.818107088411076 8430 0.210535676346121 3 2 1 -6.73352634074028 LTS-028 NA NA NA NA LTS-028 chr16 87436843 90141355 2704513 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR4722, MIR5189, CDH15, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, SLC22A31, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, TCF25, ZCCHC14, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MC1R, MVD, CHMP1A, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, SPG7, GAS8-AS1, CA5A, DBNDD1, SLC7A5, CDT1, MAP1LC3B, NA NA NA NA NA NA NA NA NA LTS-028 SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, PIEZO1) 0.346452045713708 132 0.076303563910025 0.790417187009098 4554 0.486320566849189 3 2 1 -6.74413384068124 LTS-028 NA NA NA NA LTS-028 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.768891541611397 19 0.0919343142066931 3 NA NA -5.76986081009599 LTS-028 chr17 6004 62484 56481 * c(DOC2B, RPH3AL) 0.019 1 NA 0.577116526615859 37 0.126447938223923 2 2 0 -5.76668720781376 LTS-028 chr17 62485 703708 641224 * c(DBIL5P, LOC100506388, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, RPH3AL) 0.0242085719724943 13 0.0425901758263931 0.576601432307763 501 0.158042251254646 2 2 0 -6.78706025965665 LTS-028 chr17 703709 704017 309 * NXN 0.056 1 NA 0.50684662913209 9 0.173940443191852 2 2 0 -5.76446766604548 LTS-028 chr17 704018 902869 198852 * c(TIMM22, NXN) 0.227400649531298 9 0.138706624851799 0.581912111856423 93 0.186520190435044 3 2 1 -7.48545318138167 LTS-028 chr17 902870 908229 5360 * c(ABR, TIMM22) 0.037 1 NA 0.562391745298958 39 0.0994272056872224 2 2 0 -5.76442579238261 LTS-028 chr17 908230 1203681 295452 * c(MIR3183, TUSC5, ABR, BHLHA9) 0.0324592912723225 19 0.0230491465762778 0.575015570259919 267 0.228446967422055 2 2 0 -6.74329989968372 LTS-028 chr17 1203682 1204291 610 * TUSC5 0.023 1 NA 0.549547621051822 15 0.149506903806193 2 2 0 -5.76441440628231 LTS-028 chr17 1204292 2929392 1725101 * c(MIR1253, PITPNA-AS1, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, HIC1, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, SNORD91A, SNORD91B, TLCD2, YWHAE, METTL16, RILP, MIR22HG, SCARF1, SGSM2) 0.0341693118607875 50 0.0229640357684687 0.56991221032651 2516 0.210226690387891 2 2 0 -6.74341198848845 LTS-028 chr17 2929393 2929674 282 * RAP1GAP2 0.051 1 NA 0.741167733368771 3 0.346142071024794 3 3 0 -5.76442389535692 LTS-028 chr17 2929675 3195503 265829 * c(RAP1GAP2, OR1A2, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1G1) 0.264948876735923 9 0.213115448629245 0.606530904606186 173 0.574875798961612 3 2 1 -6.8516667645567 LTS-028 chr17 3195504 3213690 18187 * c(OR3A4P, OR3A1) 0.052 1 NA 0.656102184433582 13 0.402268439522538 2 2 0 -5.76615871147004 LTS-028 chr17 3213691 6981397 3767707 * c(C17orf107, LOC100130950, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, P2RX5-TAX1BP3, MIR4520-1, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHRNE, CYB5D2, ZFP3, GGT6, SPNS2, CTNS, TRPV3, SLC16A11, FBXO39, SLC16A13, SPNS3, ENO3, NLRP1, CAMTA2, ZZEF1, WSCD1, SHPK, AIPL1, ALOX12, ALOX12P2, ALOX15, BCL6B, RNF167, PELP1, GP1BA, VMO1, SLC13A5, TAX1BP3, LOC339166, SMTNL2, ITGAE, GLTPD2, INCA1, SCIMP, NA NA NA NA NA NA NA NA NA LTS-028 OR3A4P, MED11, ARRB2, ASPA, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, ANKFY1, PFN1, PLD2, FAM64A, XAF1, SLC52A1, NCBP3, DHX33, PSMB6, MIR497, CXCL16, C1QBP, LOC728392, UBE2G1, TRPV1, ZNF232, MIS12, PITPNM3, EMC6, TEKT1, OR1E1, OR1E2, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, ZNF594, SPATA22, TXNDC17, TM4SF5, USP6, RABEP1, SPAG7, KIAA0753) 0.0475528952509171 172 0.0404593049663132 0.562909287739511 6160 0.159430759393669 2 2 0 -6.79555739271197 LTS-028 NA NA NA NA LTS-028 chr17 6981398 7011144 29747 * c(CLEC10A, ASGR2) 0.05 1 NA 0.588872484695175 29 0.109298772522279 2 2 0 -5.76859582067643 LTS-028 chr17 7011145 7117272 106128 * c(DLG4, ASGR1, ASGR2) 0.0458045307337423 2 0.00636396103067892 0.598210264588253 175 0.165651132408773 2 2 0 -8.10578950781472 LTS-028 chr17 7117273 7120302 3030 * DLG4 NA 0 NA 0.856 1 NA NA NA NA NA LTS-028 chr17 7120303 7646689 526387 * c(TMEM256-PLSCR3, SENP3-EIF4A1, SAT2, GABARAP, CHRNB1, CLDN7, DNAH2, KCTD11, DLG4, DVL2, EFNB3, EIF5A, C17orf74, FGF11, CTDNEP1, ELP5, TMEM256, SENP3, SNORA67, TMEM102, GPS2, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, MIR324, ATP1B2, YBX2, POLR2A, WRAP53, PLSCR3, NLGN2, ZBTB4, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, TP53, PHF23, NEURL4, TNK1, TNFSF13, TNFSF12, FXR2, MPDU1, CD68, ACAP1) 0.021356272651776 68 0.0114688856483881 0.876259837473579 2695 0.217661687133552 3 3 0 -6.79378692956637 LTS-028 chr17 7646690 7660431 13742 * c(RPL29P2, DNAH2) NA 0 NA 0.565 1 NA NA NA NA NA LTS-028 chr17 7660432 10420035 2759604 * c(LOC100128288, MIR4314, NA, MIR4521, CHD3, CNTROB, CYB5D1, USP43, KRBA2, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DHRS7C, ARHGEF15, KDM6B, PIK3R5, ALOX12B, ALOX15B, LOC284023, LINC00324, RANGRF, GUCY2D, SPDYE4, SLC25A35, MYH1, MYH4, MYH8, MYH10, PER1, PFAS, BORCS6, TRAPPC1, ALOXE3, RCVRN, RPL26, RNF222, SCARNA21, VAMP2, CTC1, NDEL1, TMEM107, NAA38, HES7, GAS7, MYH13, KCNAB3, AURKB, TMEM88, GLP2R, NA NA NA NA NA NA NA NA NA LTS-028 NTN1, STX8) 0.030956894734258 89 0.0207140288405454 0.588407159745819 4553 0.165497786075607 2 2 0 -6.91612327849128 LTS-028 NA NA NA NA LTS-028 chr17 10420036 10432735 12700 * c(MYH1, MYH2) 0.037 1 NA 0.549837697813657 85 0.11128157185848 2 2 0 -5.76456058145279 LTS-028 chr17 10432736 16593798 6161063 * c(MIR744, LINC00675, MIR1288, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, TRIM16, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CDRT15, DNAH9, TVP23C, CENPV, SNORD49A, LINC00670, CDRT4, TBC1D26, CDRT1, TMEM220, SHISA6, LRRC75A, MEIS3P1, MYH2, MYH3, TRPV2, PMP22, TTC19, ADPRM, ZNF286A, ZNF287, ZNF624, ELAC2, SCO1, MAP2K4, PIRT, CDRT15P2, TEKT3, SNORD49B, SNORD65, UBB, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, NA NA NA NA NA NA NA NA NA LTS-028 PIGL, NCOR1, CCDC144A, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.0442313632583768 79 0.0407683985144058 0.566769655588169 3601 0.470557780464444 2 2 0 -6.76711637941394 LTS-028 NA NA NA NA LTS-028 chr17 16593799 16649035 55237 * c(USP32P1, CCDC144A) NA 0 NA 0.517222494052902 29 0.149498826131774 2 NA NA -5.77314072921393 LTS-028 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 0.826 1 NA NA NA NA NA LTS-028 chr17 16664882 16680069 15188 * c(USP32P1, CCDC144A) 0.472 1 NA 1.00405274808308 33 0.328508659541783 4 4 0 -5.76483551492003 LTS-028 chr17 16680070 16836298 156229 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2) NA 0 NA 1.13223492010296 6 1.16953125937987 4 NA NA -5.76457580564658 LTS-028 chr17 16836299 16836300 2 * TNFRSF13B 0.019 1 NA 0.028 1 NA NA NA NA NA LTS-028 chr17 16836301 18315385 1479085 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.130516969422638 9 0.179471446196881 0.583757111532987 2656 0.125300344547218 2 2 0 -7.00684219219992 LTS-028 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.081 1 NA NA NA NA NA LTS-028 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.13487508688702 67 0.122555858649725 1 NA NA -7.27775260875582 LTS-028 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.997 1 NA NA NA NA NA LTS-028 chr17 18483256 18554918 71663 * c(TBC1D28, CCDC144B) 0.486 1 NA 0.589712801013111 69 0.370398529639007 2 2 0 -5.76533661772149 LTS-028 chr17 18554919 18653145 98227 * c(FBXW10, TRIM16L, FOXO3B, ZNF286B) 0.025 1 NA 0.5453618015122 251 0.129016745693428 2 2 0 -5.76641688475826 LTS-028 chr17 18653146 20924523 2271378 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.0583604829762889 30 0.0677806214465326 0.58259815586694 2123 0.172066893839529 2 2 0 -6.88436980905131 LTS-028 chr17 20924524 21194769 270246 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.415 1 NA 0.536745381503 110 0.131407026405836 2 2 0 -5.77920056306473 LTS-028 chr17 21194770 21208456 13687 * MAP2K3 0.363695203377193 35 0.0976730698372308 0.626881339462594 93 0.188023587789451 3 2 1 -6.78133234259986 LTS-028 chr17 21208457 21215483 7027 * MAP2K3 0.43 1 NA 0.548472365862562 5 0.0702837107728384 2 2 0 -5.76469042782046 LTS-028 chr17 21215484 21217586 2103 * MAP2K3 0.422254255560075 16 0.0256878700297761 0.627387101634352 29 0.11462504734059 7 4 3 -6.84418809169979 LTS-028 chr17 21217587 21217596 10 * MAP2K3 0.36 1 NA 0.768 1 NA NA NA NA NA LTS-028 chr17 21217597 21217873 277 * MAP2K3 0.293150804079141 9 0.123198011347586 0.652513813629615 13 0.167607906306386 7 5 2 -6.73981097657125 LTS-028 chr17 21217874 21218040 167 * MAP2K3 0.446 1 NA 0.628860023582387 5 0.0798448495521158 2 2 0 -5.76463005875568 LTS-028 chr17 21218041 21318698 100658 * c(KCNJ12, MAP2K3) 0.405660729636932 17 0.0740300018672875 0.667292172470954 32 0.195086702705696 2 1 1 -6.92718214071297 LTS-028 chr17 21318699 21318770 72 * KCNJ12 0.278 1 NA 0.677094485269005 3 0.12916784945695 3 3 0 -5.76450163385065 LTS-028 chr17 21318771 22066835 748065 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.29992916093392 52 0.0855367116195777 0.66088614834964 275 0.227626727532001 3 2 1 -7.24012947419636 LTS-028 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-028 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.018 1 NA 0.624795749555861 17 0.189742627540261 2 2 0 -5.76641179410984 LTS-028 chr17 25630389 27959066 2328678 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, NA NA NA NA NA NA NA NA NA LTS-028 VTN, RAB34, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.0359353544201112 41 0.0181961534396696 0.583317893365585 4123 0.14505108059354 2 2 0 -6.85749662599072 LTS-028 NA NA NA NA LTS-028 chr17 27959067 28900708 941642 * c(MIR3184, CPD, TBC1D29, EFCAB5, TMIGD1, MIR423, BLMH, SLC6A4, NSRP1, SSH2, GOSR1) 0.0348172006973671 14 0.0281612312418144 0.54555693131177 926 0.148426780227782 2 2 0 -6.74713372759619 LTS-028 chr17 28900709 28903418 2710 * character(0) 0.055 1 NA 0.696838583633789 13 0.212792001488392 3 3 0 -5.7653354019555 LTS-028 chr17 28903419 31268111 2364693 * c(MIR365B, MIR4724, MIR4733, MIR4725, LRRC37B, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TMEM98, MIR193A, SUZ12P1, MYO1D, NF1, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, PSMD11, C17orf75, SH3GL1P1, SH3GL1P2, MIR632, ZNF207, TEFM, ATAD5, RNF135, RAB11FIP4, CDK5R1) 0.201176220814927 9 0.159669972130016 0.555188641176153 2422 0.151942954888827 2 2 0 -7.32334493022182 LTS-028 chr17 31268112 31268378 267 * TMEM98 0.05 1 NA 0.541956993300537 7 0.224775231646872 2 2 0 -5.76441299165008 LTS-028 chr17 31268379 34433730 3165352 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.079338847639663 33 0.0827146770714261 0.559843448249612 2612 0.148193818919497 2 2 0 -6.90102538065538 LTS-028 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.007 1 NA NA NA NA NA LTS-028 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.281771421565762 39 0.325404724639661 1 NA NA -5.76640866000522 LTS-028 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.59 1 NA NA NA NA NA LTS-028 chr17 34842415 35632979 790565 * c(MIR2909, AATF, PIGW, ACACA, LHX1, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0348642047153014 9 0.0262678510731274 0.576936423177904 847 0.158834268925624 2 2 0 -6.75281006817418 LTS-028 chr17 35632980 35634023 1044 * ACACA 0.042 1 NA 0.686818162781648 5 0.323017336996019 3 3 0 -5.76459390488066 LTS-028 chr17 35634024 36214044 580021 * c(DDX52, DUSP14, SYNRG, C17orf78, YWHAEP7, ACACA, TADA2A, HNF1B) 0.0408517070068893 6 0.0364746487303168 0.54790123875613 677 0.630812263317708 2 2 0 -6.74865740540632 LTS-028 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.286 1 NA NA NA NA NA LTS-028 chr17 36214814 36384868 170055 * c(YWHAEP7, LOC440434) 0.185152032577877 3 0.232777433041378 0.274563956481234 65 0.288345118237744 1 1 0 -6.89643737295111 LTS-028 chr17 36384869 36398345 13477 * LOC440434 NA 0 NA 0.326877270831595 7 0.0551020697908717 1 NA NA -5.78581458498894 LTS-028 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.513 1 NA NA NA NA NA LTS-028 chr17 36421727 36481524 59798 * c(LOC440434, GPR179, MRPL45) 0 1 NA 0.559709235958292 59 0.141595686370021 2 2 0 -5.76441846098855 LTS-028 chr17 36481525 39406427 2924903 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, NA NA NA NA NA NA NA NA NA LTS-028 MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, KRTAP4-11, SMARCE1, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, PIP4K2B, PPP1R1B, MIEN1, KRTAP4-4, TNS4, FBXL20, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.0334386105939537 122 0.0219639627989678 0.572089097445198 6121 0.172146514616055 2 2 0 -6.7701473322496 LTS-028 NA NA NA NA LTS-028 chr17 39406428 39406638 211 * KRTAP9-4 0.206 1 NA 0.815583658930311 5 0.347105603527226 3 3 0 -5.76441014543826 LTS-028 chr17 39406639 39580562 173924 * c(KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, KRT31, KRT33A, KRT33B, KRT34, KRTAP9-9, KRTAP17-1, KRTAP9-4, KRT37) 0.22669744626107 9 0.108502432128399 0.589107178801231 323 0.204292071236676 4 3 1 -7.58283490169671 LTS-028 chr17 39580563 39580660 98 * KRT37 0.015 1 NA 0.469837343827663 3 0.364886740418631 2 2 0 -5.76442319829393 LTS-028 chr17 39580661 40849842 1269182 * c(MIR5010, EIF1, P3H4, NT5C3B, CNP, LINC00974, FAM134C, ZNF385C, KCNH4, GAST, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, PSMC3IP, HCRT, KLHL10, HSD17B1, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT32, KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, GHDC, CNTNAP1, KRT38, KRT37, KRT36, HAP1, HSPB9) 0.0371298364969349 48 0.0747051621969008 0.592437622889439 3196 0.203380115781933 2 2 0 -6.7968884091277 LTS-028 chr17 40849843 41341027 491185 * c(RAMP2-AS1, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, CNTD1, RUNDC1, EZH1, G6PC, COA3, AOC2, IFI35, LINC00671, NBR1, RPL27, WNK4, BRCA1, AARSD1, RND2, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.04 1 NA 0.58525204951001 1185 0.139715125835657 2 2 0 -5.79727182137007 LTS-028 chr17 41341028 41522213 181186 * c(LINC00910, MIR2117, LINC00854, TMEM106A, ARL4D, NBR1) 0.364994347409286 9 0.134571955143377 0.557750186856629 191 0.137017237985218 2 1 1 -6.92529815137435 LTS-028 chr17 41522214 41573527 51314 * c(MIR2117, DHX8) 0.023 1 NA 0.520225474388035 51 0.154579622227004 2 2 0 -5.77089793210777 LTS-028 chr17 41573528 43131567 1558040 * c(HDAC5, GJC1, C1QL1, RUNDC3A, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, C17orf53, TMUB2, DCAKD, DBF4B, TMEM101, G6PC3, ASB16, EFTUD2) 0.0343313446071388 26 0.0194422220952236 0.600009561092264 2762 0.139054443116994 2 2 0 -6.97246563357216 LTS-028 chr17 43131568 43138603 7036 * DCAKD NA 0 NA 0.799 1 NA NA NA NA NA LTS-028 chr17 43138604 43368165 229562 * c(MAP3K14-AS1, HEXIM1, PLCD3, SPATA32, HEXIM2, NMT1, FMNL1, ACBD4, MAP3K14) 0.01647776404001 13 0.0142644438718921 0.852186704443954 518 0.511042044749509 4 4 0 -6.77028165831972 LTS-028 chr17 43368166 43471337 103172 * MAP3K14 NA 0 NA 0.457 1 NA NA NA NA NA LTS-028 chr17 43471338 44172146 700809 * character(0) 0.0309379078394995 53 0.01616862790412 0.617330069577292 700 0.255774359927658 2 2 0 -6.83478094138435 LTS-028 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.353 1 NA NA NA NA NA LTS-028 chr17 44248158 44364336 116179 * character(0) 0.0538936206200942 17 0.0198053023203384 0.378388259414417 84 0.20717593327037 1 1 0 -7.01947352855178 LTS-028 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.794 1 NA NA NA NA NA LTS-028 chr17 44408492 45050533 642042 * c(MIR5089, WNT3, WNT9B, GOSR2) 0.0265405771482704 4 0.0169016764454496 0.638300949030308 228 0.523536643094638 3 3 0 -6.83295846347791 LTS-028 chr17 45050534 45214473 163940 * c(RPRML, GOSR2, CDC27) 0.23 1 NA 0.509598882481433 101 0.106918855138644 2 2 0 -5.83580768914379 LTS-028 chr17 45214474 45258971 44498 * CDC27 0.29248524997534 10 0.109321594898314 0.576344263139947 80 0.198070789912232 3 2 1 -6.93193001115051 LTS-028 chr17 45258972 45422446 163475 * c(EFCAB13, ITGB3, MYL4, CDC27) 0.028 1 NA 0.609150671851032 189 0.147324053087945 2 2 0 -5.79827050307311 LTS-028 chr17 45422447 56676910 11254464 * c(MIR1203, TOM1L1, MIR3185, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, HOXB-AS1, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, CHAD, KAT7, NXPH3, SNF8, OSBPL7, HSF5, OR4D2, MSI2, WFIKKN2, FLJ40194, B4GALNT2, EFCAB13, MRPL10, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, OR4D1, GIP, GNGT2, TTLL6, LOC284080, C17orf47, SNX11, NA NA NA NA NA NA NA NA NA LTS-028 TBX21, HLF, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, C17orf67, PRAC2, ITGA3, HILS1, RNF126P1, KPNB1, TOB1-AS1, LPO, CUEDC1, HOXB-AS3, MIR10A, MIR142, MIR152, MIR196A1, MPO, NFE2L1, NGFR, NME1, NME2, UTP18, ABI3, COPZ2, MRPL27, ATP5G1, PDK2, MRPS23, LUC7L3, PHB, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, PNPO, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, CA10, PCTP, SCPEP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 XYLT2, SRSF1, SGCA, SPATA20, UBE2Z, MRPL45P2, NME1-NME2, SP2, SUPT4H1, FLJ45513, TRIM25, VEZF1, PRR15L, ACSF2, CDK5RAP3, SP6, FAM117A, COIL, AKAP1, EPX, SPOP, MYCBPAP, PRAC1, KIF2B, PPP1R9B, DGKE, SKAP1, ABCC3, CACNA1G, SPAG9, LRRC46, SCRN2, MTMR4, ANKRD40, NOG, TSPOAP1, NPEPPS, TBKBP1) 0.0357534642704016 157 0.0228681095150951 0.580786329200004 9122 0.209972613659641 2 2 0 -6.95936668098988 LTS-028 NA NA NA NA LTS-028 chr17 56676911 67411154 10734244 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, NA NA NA NA NA NA NA NA NA LTS-028 APOH, LRRC37A3, KPNA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, FAM20A, BCAS3, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.0405948197566393 76 0.0206882753472131 0.559018433495627 7870 0.143988925609736 2 2 0 -6.77657122609922 LTS-028 NA NA NA NA LTS-028 chr17 67411155 70732881 3321727 * c(LINC00673, SLC39A11, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, MAP2K6, SOX9) 0.0361313348767244 7 0.0116537343289404 0.653049246197605 241 0.197961042575536 2 2 0 -7.77910731685966 LTS-028 chr17 70732882 72869078 2136197 * c(CD300LD, MIR3615, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, FDXR, CDC42EP4, NAT9, LINC00469, GRIN2C, RAB37, CD300E, GPR142, BTBD17, LOC400620, SDK2, TMEM104, C17orf80, GPRC5C, RPL38, CPSF4L, DNAI2, SSTR2, FAM104A, MGC16275, SLC9A3R1, COG1, TTYH2) 0.0374691485951175 56 0.0242732015129507 0.581125460195204 2120 0.160117726156372 2 2 0 -6.81694100889924 LTS-028 chr17 72869079 72889676 20598 * c(FDXR, FADS6) 0.45 1 NA 0.558666446754683 29 0.0991260331262669 2 2 0 -5.76441024205782 LTS-028 chr17 72889677 73489567 599891 * c(LOC100287042, MIR3678, ATP5H, USH1G, GGA3, KCTD2, FADS6, HID1, GRB2, NT5C, CDR2L, MRPL58, OTOP3, MRPS7, HN1, MIF4GD, SLC25A19, SUMO2, ARMC7, NUP85, SLC16A5, OTOP2, TMEM94) 0.0758703617438451 9 0.154596607696001 0.594860562572694 1002 0.148411849246802 2 2 0 -6.83893784699684 LTS-028 chr17 73489568 73491484 1917 * TMEM94 0.023 1 NA 0.636952463041265 23 0.151361241064028 2 2 0 -5.76527684594875 LTS-028 chr17 73491485 74944865 1453381 * c(SMIM6, RNF157-AS1, SNHG16, MIR4738, CDK3, ST6GALNAC2, CYGB, RNF157, METTL23, MGAT5B, AANAT, TRIM65, UNC13D, EVPL, FOXJ1, JMJD6, EXOC7, WBP2, GALK1, TSEN54, UBALD2, SAP30BP, H3F3B, ZACN, ITGB4, LLGL2, MXRA7, ACOX1, ST6GALNAC1, PRPSAP1, CASKIN2, UBE2O, SRSF2, SMIM5, MRPL38, SRP68, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, RHBDF2, MYO15B, QRICH2, FBF1, UNK, GALR2, SPHK1, TRIM47, RECQL5, TMEM94 NA NA NA NA NA NA NA NA NA LTS-028 ) 0.0327599211325275 64 0.0206766488949203 0.580080488689418 3699 0.1539277489574 2 2 0 -6.7926036151148 LTS-028 NA NA NA NA LTS-028 chr17 74944866 75085310 140445 * c(MGAT5B, SEC14L1, SNHG20) NA 0 NA 0.901 1 NA NA NA NA NA LTS-028 chr17 75085311 75212800 127490 * c(SEC14L1, SNHG20, SCARNA16) NA 0 NA 0.836502006794563 109 0.169576853397776 3 NA NA -5.7657106160151 LTS-028 chr17 75212801 75277514 64714 * c(SEPT9, SEC14L1) NA 0 NA 0.499 1 NA NA NA NA NA LTS-028 chr17 75277515 75878305 600791 * c(MIR4316, LOC100507351, SEPT9, FLJ45079) 0.0198139994045051 8 0.0209211956773849 0.568696368602556 216 0.138065007267217 2 2 0 -7.04046463896199 LTS-028 chr17 75878306 76268032 389727 * c(TNRC6C-AS1, C17orf99, LOC100996291, TMC6, AFMID, TMC8, TMEM235, BIRC5, FLJ45079, TNRC6C, TK1, SYNGR2) 0.0270514694638674 16 0.0127167868058982 0.843645395702123 681 0.209670934301885 3 3 0 -6.77441046377263 LTS-028 chr17 76268033 76354459 86427 * c(LOC100996291, SOCS3) NA 0 NA 0.527 1 NA NA NA NA NA LTS-028 chr17 76354460 80363378 4008919 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, DNAH17-AS1, ALYREF, BAIAP2, C1QTNF1, PPP1R27, SLC38A10, CANT1, TBC1D16, CSNK1D, TEPSIN, RBFOX3, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, NA NA NA NA NA NA NA NA NA LTS-028 TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, SGSH, ENGASE, TIMP2, ACTG1, MIR657, ASPSCR1, CARD14, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SOCS3, SLC16A3, HGS, CD7, MAFG-AS1, CYTH1, PGS1, AATK, EIF4A3) 0.0393239098776435 167 0.0194485497181916 0.582407525245316 6250 0.230779726646955 2 2 0 -6.84058651882821 LTS-028 NA NA NA NA LTS-028 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 0.558 1 NA NA NA NA NA LTS-028 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.032 3 0.013228756555323 1.12589319559053 39 0.571587700467073 2 2 0 -6.78494856688412 LTS-028 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.528 1 NA NA NA NA NA LTS-028 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0311472034920404 21 0.0235008611797627 0.578118568614681 877 0.155684344696439 2 2 0 -6.76865579939712 LTS-028 chr17 81050983 81083625 32643 * METRNL NA 0 NA 0.733377617643572 13 0.114702513776581 3 NA NA -5.78219148180096 LTS-028 chr18 116845 120862 4018 * ROCK1P1 0.018 1 NA 0.913765710869863 19 0.293410257058898 3 3 0 -5.76475170235083 LTS-028 chr18 120863 5132835 5011973 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.0284888468702947 26 0.0190652724969935 0.757618837900663 1937 0.216484435286947 3 3 0 -7.12505727126542 LTS-028 chr18 5132836 5132925 90 * character(0) NA 0 NA 0.878 1 NA NA NA NA NA LTS-028 chr18 5132926 8546022 3413097 * c(LINC01387, LOC100192426, MIR4317, MIR3976, LINC00526, EPB41L3, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.0304443495150816 33 0.0179306323301097 0.848283247872145 1307 0.259531702753176 3 3 0 -6.85103832467845 LTS-028 chr18 8546023 13764016 5217994 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, RAB12, ANKRD12, MTCL1, GNAL, ANKRD62, IMPA2, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.0287248945908915 65 0.0151804530184759 0.7805380290749 3080 1.01475312947175 3 3 0 -6.79954353184783 LTS-028 chr18 13764017 13825727 61711 * c(MC5R, RNMT) 0.033 1 NA 0.674951806574432 19 0.154330984029711 2 2 0 -5.81965199870622 LTS-028 chr18 13825728 14851756 1026029 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P) 0.149290300078066 9 0.121133305815444 0.761005094492686 224 0.237384358710531 3 3 0 -7.37230289806849 LTS-028 chr18 14851757 15006193 154437 * ANKRD30B NA 0 NA 0.811534419844047 53 0.33422912302243 3 NA NA -5.76446575692845 LTS-028 chr18 18529727 19100717 570991 * c(ROCK1, GREB1L) 0.039 1 NA 0.759621313815098 379 0.170921317493586 3 3 0 -5.82845279372618 LTS-028 chr18 19100718 22058691 2957974 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, ANKRD29, ABHD3, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.0316495501031601 35 0.0162090855319328 0.767486776879208 2170 0.213457697257221 3 3 0 -7.02222401228 LTS-028 chr18 22058692 22058701 10 * HRH4 NA 0 NA 0.841 1 NA NA NA NA NA LTS-028 chr18 22058702 28742778 6684077 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC1, DSC2, DSC3, ZNF521, KCTD1, AQP4, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.0207021323766971 12 0.0133348483987701 0.871637924453128 1082 0.251578281299222 3 3 0 -7.01096197435417 LTS-028 chr18 28742779 35237236 6494458 * c(ZSCAN30, MIR4318, MIR3975, DSG2-AS1, ZNF271P, MAPRE2, INO80C, SLC25A52, DSG4, DSC1, DSG1, DSG2, DSG3, DTNA, TRAPPC8, ZNF396, SLC39A6, GALNT1, TPGS2, CCDC178, MIR187, MEP1B, WBP11P1, RNF138, RNF125, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, GAREM1, TTR, ZNF24, FHOD3, ASXL3, C18orf21, ZNF397, NOL4, B4GALT6) 0.0281070290875397 43 0.0131539146512883 0.807769473539359 3574 0.557472026973222 3 3 0 -6.79557251421024 LTS-028 chr18 37201972 39609440 2407469 * c(MIR5583-2, MIR5583-1, PIK3C3, KC6, MIR924HG) NA 0 NA 0.569205503469935 79 0.188591162954587 2 NA NA -5.77900694312981 LTS-028 chr18 39609441 39613792 4352 * PIK3C3 NA 0 NA 0.705 1 NA NA NA NA NA LTS-028 chr18 39613793 42648464 3034672 * c(MIR4319, SETBP1, LINC00907, PIK3C3, RIT2, SYT4) 0.0230993981193512 4 0.0127899700286331 0.805962982073181 537 0.192654636644281 3 3 0 -6.74656946211504 LTS-028 chr18 43204558 44159718 955161 * c(HAUS1, LOXHD1, C18orf25, SIGLEC15, RNF165, ATP5A1, EPG5, SLC14A1, SLC14A2, PSTPIP2) 0.0154020180157806 36 0.0102812435169083 1.25030933649695 1153 0.397495321613883 5 5 0 -6.75286314627337 LTS-028 chr18 44159719 44171881 12163 * LOXHD1 NA 0 NA 0.824 1 NA NA NA NA NA LTS-028 chr18 44171882 44259150 87269 * c(LOXHD1, ST8SIA5) NA 0 NA 0.789905475590625 64 0.117517956032597 3 NA NA -5.76910475665849 LTS-028 chr18 44259151 46148116 1888966 * c(TCEB3CL2, TCEB3C, ZBTB7C, ST8SIA5, SMAD2, IER3IP1, TCEB3B, SKOR2, KATNAL2, HDHD2, PIAS2, CTIF) 0.0319625297371235 17 0.0168784582513089 0.539103303341135 816 0.152711057319197 2 2 0 -6.81277010936149 LTS-028 chr18 46148117 46162867 14751 * CTIF NA 0 NA 0.69 1 NA NA NA NA NA LTS-028 chr18 46162868 46808542 645675 * c(MIR4743, MIR4744, SMAD7, DYM, CTIF) 0.0297089986641239 9 0.0133676641356837 0.746258709567098 276 0.224738899975183 3 3 0 -6.9081669757591 LTS-028 chr18 46808543 46812770 4228 * DYM NA 0 NA 0.55 1 NA NA NA NA NA LTS-028 chr18 46812771 47017820 205050 * c(SNORD58C, MIR1539, RPL17-C18orf32, SNORD58A, C18orf32, DYM, RPL17) 0.0307959247224059 2 0.0113137084989848 0.574436667755076 80 0.224491329369366 2 2 0 -6.81739666458603 LTS-028 chr18 47017821 47088826 71006 * c(RPL17-C18orf32, SNORD58B, RPL17, LIPG) 0.045 1 NA 0.726167819568203 11 0.232389876168164 3 3 0 -5.77562323426995 LTS-028 chr18 47088827 47902204 813378 * c(MIR4320, ACAA2, SKA1, CFAP53, CXXC1, MBD1, MYO5B, SCARNA17, LIPG) 0.0544362577828083 4 0.0372513981840503 0.603595633683104 580 0.142186422315794 2 2 0 -7.03389054021811 LTS-028 chr18 47902205 67673730 19771526 * c(LINC01630, CDH7, LINC01539, LOC100505549, MIR4529, MIR3591, MIR5011, LINC-ROR, LINC01544, CD226, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, DCC, SKA1, DOK6, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, RTTN, CDH20, DYNAP, BOD1L2, HMSD, LOC284294, CDH19, GRP, RAX, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, SMAD4, MC4R, ME2, NARS, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, SERPINB8, NA NA NA NA NA NA NA NA NA LTS-028 SERPINB10, SERPINB13, PMAIP1, TMX3, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, LOC643542, SNORA37, TCF4, CCDC102B, CCDC68, MRO, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, DSEL, TXNL1, ONECUT2, VPS4B) 0.0406302616099235 157 0.0247876149183391 0.543904940033146 6816 0.256592586861076 2 2 0 -6.88743108826117 LTS-028 NA NA NA NA LTS-028 chr18 67673731 67684624 10894 * RTTN NA 0 NA 0.791 1 NA NA NA NA NA LTS-028 chr18 67684625 67997312 312688 * c(RTTN, SOCS6) 0.05 1 NA 0.772937552503047 331 0.165491267136083 3 3 0 -5.78652065102785 LTS-028 chr18 67997313 77926862 9929550 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, CNDP2, C18orf63, ZNF236, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.0340225339834575 59 0.0203538395477769 0.539015629408882 2629 0.154720767490553 2 2 0 -7.03302960003639 LTS-028 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.506827445219262 17 0.0873545429641217 2 NA NA -5.82203548351348 LTS-028 chr19 107416 107456 41 * character(0) 0.323 1 NA 1.984 1 NA NA NA NA NA LTS-028 chr19 107457 8579011 8471555 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-028 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, LINC01002, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, ANGPTL4, MARCH2, CD320, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STK11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, OR4F17, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.343588041252259 444 0.0772721334790832 0.792714172677311 14511 0.230030359191767 3 2 1 -6.8283710600815 LTS-028 NA NA NA NA LTS-028 chr19 8579012 8586086 7075 * c(MYO1F, ZNF414) 0.399 1 NA 0.866969628449968 5 0.255354263720033 3 3 0 -5.76462825510912 LTS-028 chr19 8586087 9226017 639931 * c(OR7G1, OR1M1, ZNF558, ACTL9, OR2Z1, OR7G2, MYO1F, ADAMTS10, MBD3L1, MUC16) 0.332286532783362 76 0.0735598336241119 0.831037149448643 1584 0.334598138598499 3 2 1 -6.74250954599846 LTS-028 chr19 9226018 9251220 25203 * c(OR7G1, OR7G3, ZNF317) 0.377 1 NA 0.836345172437893 39 0.179858367580338 3 3 0 -5.76463484325257 LTS-028 chr19 9251221 11725723 2474503 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, OR7D4, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, OR7D2, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, OR7E24, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, NA NA NA NA NA NA NA NA NA LTS-028 PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, ZNF317, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.357996852993787 93 0.0563622139246257 0.792019098567779 4772 0.199748092534076 3 2 1 -6.8254394760882 LTS-028 NA NA NA NA LTS-028 chr19 11725724 11727481 1758 * ZNF627 NA 0 NA 0.701 1 NA NA NA NA NA LTS-028 chr19 11727482 12769336 1041855 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, MAN2B1, ZNF44, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.290180503582097 42 0.112247075344282 0.721908282994056 1799 0.218455180907327 3 2 1 -7.05280287073486 LTS-028 chr19 12769337 12772067 2731 * MAN2B1 NA 0 NA 0.887 1 NA NA NA NA NA LTS-028 chr19 12772068 13915967 1143900 * c(RNASEH2A, KLF1, NACC1, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, C19orf53, HOOK2, TNPO2, JUNB, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, TRMT1, RAD23A, ZSWIM4, PRDX2, CACNA1A, C19orf43, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, GADD45GIP1, IER2) 0.343307904312216 25 0.0548012469444507 0.811263948926005 1800 0.167792978381936 3 2 1 -6.73575149168934 LTS-028 chr19 13915968 13919675 3708 * ZSWIM4 NA 0 NA 1.112 1 NA NA NA NA NA LTS-028 chr19 13919676 14038791 119116 * c(LOC284454, NANOS3, MIR181C, CC2D1A, MIR181D, ZSWIM4, C19orf57) 0.389 1 NA 1.0130596409385 267 0.210935731170038 4 4 0 -5.770588215933 LTS-028 chr19 14038792 14048587 9796 * c(CC2D1A, PODNL1) 0.491 1 NA 0.959997758167528 67 0.157224755365316 4 4 0 -5.76759925363828 LTS-028 chr19 14048588 19292674 5244087 * c(TMEM221, MEF2B, MIR1470, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, GIPC1, ILVBL, CYP4F8, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, LINC00905, SSBP4, FAM129C, NR2F6, ADGRL1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, BRD4, CASP14, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, OR10H3, NA NA NA NA NA NA NA NA NA LTS-028 OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, BABAM1, ADGRE2, DNAJB1, PALM3, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, CLEC17A, CYP4F24P, OR7A10, CYP4F3, BORCS8-MEF2B, RAB8A, MYO9B, NDUFB7, NOTCH3, PDE4C, ISYNA1, PIK3R2, DDX49, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, PRKACA, ASF1B, PKN1, USE1, PTGER1, ANO8, CYP4F11, EPS15L1, WIZ, RAB3A, UPF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RFX1, RPL18A, C19orf67, RASAL3, MRPL34, SLC1A6, SLC5A5, UCA1, CYP4F12, BST2, MIR639, TPM4, LOC729966, BORCS8, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, SAMD1, DCAF15, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, IL27RA, GDF15, TECR, ADGRE5) 0.456492776149645 191 0.0469199678586026 1.01794305016974 8892 0.254144380943021 4 2 2 -6.94213209353885 LTS-028 NA NA NA NA LTS-028 chr19 19292675 19360971 68297 * c(NR2C2AP, NCAN, BORCS8-MEF2B, BORCS8, RFXANK) NA 0 NA 1.0094694530352 231 0.159583884483089 4 NA NA -5.77132650081997 LTS-028 chr19 19360972 19368692 7721 * c(NCAN, HAPLN4) NA 0 NA 0.739 1 NA NA NA NA NA LTS-028 chr19 19368693 19431963 63271 * c(MAU2, HAPLN4, TM6SF2, SUGP1) 0.246 1 NA 0.788320139045058 175 0.151169480460376 3 3 0 -5.76670948379821 LTS-028 chr19 19431964 19843551 411588 * c(CILP2, MAU2, YJEFN3, NDUFA13, GMIP, GATAD2A, ATP13A1, ZNF14, PBX4, TSSK6, LPAR2, ZNF101) 0.359394569372047 37 0.0772229330016763 0.799575839261094 935 0.206548324683414 3 2 1 -6.76949535098199 LTS-028 chr19 19843552 19905348 61797 * c(LINC00663, ZNF506, ZNF14) NA 0 NA 0.756764050247613 14 0.0784755859004416 3 NA NA -5.80087737488171 LTS-028 chr19 19905349 19905447 99 * ZNF506 NA 0 NA 0.747 1 NA NA NA NA NA LTS-028 chr19 19905448 20133846 228399 * c(ZNF506, ZNF253, ZNF93, ZNF682) 0.424 1 NA 0.636499212801463 127 0.145034095608201 2 2 0 -5.87372261928321 LTS-028 chr19 20133847 20308940 175094 * c(ZNF90, ZNF486, ZNF682) NA 0 NA 0.620066586156183 93 0.158465087525516 2 NA NA -5.8098092876278 LTS-028 chr19 20308941 20309263 323 * ZNF486 NA 0 NA 1.346 1 NA NA NA NA NA LTS-028 chr19 20309264 21492177 1182914 * c(ZNF737, MIR1270, ZNF714, ZNF431, ZNF626, ZNF826P, ZNF708, ZNF85, ZNF430, ZNF486) 0.470176178252942 2 0.00848528137423854 0.791674655003272 249 0.409777918526588 4 2 2 -10.5453054631282 LTS-028 chr19 21492178 21493280 1103 * ZNF708 NA 0 NA 0.992 1 NA NA NA NA NA LTS-028 chr19 21493281 24115369 2622089 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF738, ZNF681, ZNF676, ZNF100, ZNF675, ZNF493, ZNF429, ZNF728, RPSAP58, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF726, ZNF708, ZNF43, ZNF91, ZNF99, ZNF208) 0.409235641129983 35 0.0797481118556284 1.0364454685673 911 0.312421427089061 4 2 2 -6.85978949632012 LTS-028 chr19 24115370 24115526 157 * ZNF726 NA 0 NA 1.21912300557781 7 0.259022797305198 5 NA NA -5.76442213761107 LTS-028 chr19 24115527 24115542 16 * ZNF726 NA 0 NA 0.773 1 NA NA NA NA NA LTS-028 chr19 24115543 24345121 229579 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.817110497410499 87 0.195806448984143 3 NA NA -5.76441659810107 LTS-028 chr19 28247625 30199252 1951628 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12) 0.286 1 NA 0.778832867364264 181 0.142651279268641 3 3 0 -5.9012107519973 LTS-028 chr19 30199253 35851352 5652100 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, NA NA NA NA NA NA NA NA NA LTS-028 RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.343298692723062 92 0.079911139731736 0.802453109263151 3316 0.197397218753159 3 2 1 -6.76619253126731 LTS-028 NA NA NA NA LTS-028 chr19 35851353 35862196 10844 * FFAR3 NA 0 NA 0.585 1 NA NA NA NA NA LTS-028 chr19 35862197 35863805 1609 * character(0) 0.314491911309282 3 0.0675573830162181 0.543348546858283 41 0.359027184920857 13 9 4 -6.76103677652178 LTS-028 chr19 35863806 35863809 4 * character(0) 0.388 1 NA 1.44 1 NA NA NA NA NA LTS-028 chr19 35863810 36435600 571791 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, HCST, UPK1A, ARHGAP33, HSPB6, COX6B1, PROSER3, U2AF1L4, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR2, APLP1, SBSN, KRTDAP, NPHS1, ATP4A, PSENEN, LIN37, PRODH2, TYROBP, RBM42, LRFN3, IGFLR1, KIRREL2, NFKBID, DMKN, KMT2B) 0.371053592010757 10 0.0516106147566133 0.816272072083599 1729 0.156738659686997 3 2 1 -6.92837721842998 LTS-028 chr19 36435601 36435604 4 * LRFN3 NA 0 NA 0.997 1 NA NA NA NA NA LTS-028 chr19 36435605 36577812 142208 * c(SYNE4, THAP8, CLIP3, WDR62, SDHAF1, LRFN3, ALKBH6) 0.369476368624873 5 0.201907899795922 1.05920592111269 304 0.210796154930474 4 2 2 -6.81089824657912 LTS-028 chr19 36577813 36579948 2136 * WDR62 NA 0 NA 0.633 1 NA NA NA NA NA LTS-028 chr19 36579949 38782722 2202774 * c(LOC100134317, LINC00665, ZNF571-AS1, LOC100631378, SPINT2, TBCB, ZNF573, COX7A1, ZNF420, ZNF565, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, SIPA1L3, ZNF345, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, POLR2I, ZFP14, ZNF529, LOC644189, LOC644554, OVOL3, LOC728752, ZNF146, DPF1, CAPNS1, WDR87, ZNF527, ZNF607, ZNF382, ZNF566, ZNF461, NA NA NA NA NA NA NA NA NA LTS-028 ZNF585B, PPP1R14A) 0.358904822308638 71 0.0490729018725114 0.802711495855429 2781 0.189809494018114 3 2 1 -6.82415765870409 LTS-028 NA NA NA NA LTS-028 chr19 38782723 38794886 12164 * c(SPINT2, C19orf33, YIF1B) NA 0 NA 0.948 1 NA NA NA NA NA LTS-028 chr19 38794887 38794895 9 * c(C19orf33, YIF1B) 0.379 1 NA 1.355 1 NA NA NA NA NA LTS-028 chr19 38794896 38795159 264 * c(C19orf33, YIF1B) 0.458 1 NA 0.950015023424317 5 0.0648744942176815 4 4 0 -5.76500818828662 LTS-028 chr19 38795160 40384193 1589034 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, FBL, SIRT2, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, LGALS7B, SUPT5H, NA NA NA NA NA NA NA NA NA LTS-028 ZFP36, ACTN4, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, GMFG) 0.445391970762718 99 0.0829215602705318 1.03203805091227 3329 0.25431303550268 4 2 2 -6.76155949913798 LTS-028 NA NA NA NA LTS-028 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.003 1 NA NA NA NA NA LTS-028 chr19 40389650 40399881 10232 * FCGBP NA 0 NA 0.139869268878789 39 0.129149590530296 1 NA NA -5.9693019825058 LTS-028 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.868 1 NA NA NA NA NA LTS-028 chr19 40405935 40729089 323155 * c(TTC9B, ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, CNTD2, FCGBP) 0.448642881233178 9 0.0290774826970974 0.932055660509023 643 0.218973195140448 4 2 2 -6.84477128788064 LTS-028 chr19 40729090 45017064 4287975 * c(SRRM5, ERICH4, LOC100289650, LOC100379224, MIR4323, PCAT19, LOC100505622, LOC100505715, MIA-RAB4B, RAB4B-EGLN2, LIPE-AS1, CEACAM5, RABAC1, ZNF234, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, EGLN2, ZNF526, CEACAM20, IRGQ, ZNF428, C19orf47, LYPD4, HIPK4, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, MEGF8, CADM4, ERF, AKT2, CYP2G1P, CIC, ETHE1, PRG1, PLD3, ZNF285, LYPD3, C19orf54, PRR19, TMEM145, NA NA NA NA NA NA NA NA NA LTS-028 CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, ZNF404, ZNF284, ZNF233, B3GNT8, KCNN4, PINLYP, LIPE, PSG8, CEACAM6, ATP1A3, PAFAH1B3, PLAUR, RAB4B, POU2F2, ATP5SL, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CD177, PRX, SPTBN4, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, MIR641, TGFB1, XRCC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF576, COQ8B, CNTD2, ITPKC, B9D2, MIA, TEX101, LTBP4, CNFN, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, ZNF235, CD79A) 0.448343143381243 116 0.063107078630795 1.01582102144332 6494 0.220029100536668 4 2 2 -6.9197843544196 LTS-028 NA NA NA NA LTS-028 chr19 45017065 45017451 387 * CEACAM20 NA 0 NA 1.12320922997417 7 0.0957230628527147 4 NA NA -5.76445296543076 LTS-028 chr19 45017452 45021049 3598 * CEACAM20 NA 0 NA 0.83 1 NA NA NA NA NA LTS-028 chr19 45021050 45024581 3532 * CEACAM20 0.389 1 NA 0.816954047245991 7 0.108333479853381 3 3 0 -5.76441055875688 LTS-028 chr19 45024582 51563784 6539203 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, KLK11, CLASRP, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, NA NA NA NA NA NA NA NA NA LTS-028 CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, JOSD2, IZUMO2, CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, IRF2BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, GPR32, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, C19orf81, APOC2, APOE, KLK3, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KLK1, KLK2, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SIGLEC16, LOC400710, BCAM, MIR150, KLK12, MIR330, IGFL4, MYBPC2, NOVA2, NPAS1, NTF4, NUCB1, SHANK1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, CABP5, PRRG2, KLK7, KLK6, KLK10, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, KLKP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RPL18, RPS11, RRAS, RTN2, CLEC11A, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, MIR642A, C5AR1, TULP2, CCDC61, NR1H2, VASP, MIR769, CA11, TRAPPC6A, FKRP, TBC1D17, GEMIN7, MYH14, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 PGLYRP1, EXOC3L2, CYTH2, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, NAPSA, CD37, KLK4, DHX34) 0.344020563845301 323 0.0722477871329692 0.803638964221589 12636 0.224422388383287 3 2 1 -6.75903179612707 LTS-028 NA NA NA NA LTS-028 chr19 51563785 54800223 3236439 * c(SIGLEC14, MIR935, LOC100129083, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR4752, MIR371B, LILRB2, LILRB5, LILRB3, LILRA3, BIRC8, CLDND2, ZNF816, OSCAR, ZNF813, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, ETFB, FPR1, FPR2, FPR3, KLK13, PRPF31, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, LOC284379, VSTM1, NA NA NA NA NA NA NA NA NA LTS-028 TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, LIM2, ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, TARM1, MIR372, MIR373, NDUFA3, NKG7, CNOT3, DPRX, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, CEACAM18, LINC01530, ZNF28, ZNF137P, ZNF175, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, SIGLEC5, SIGLEC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ZNF765, NLRP12, MYADM, ZNF845, CD33, SIGLEC6, ZNF432) 0.350927430122624 143 0.0791191304110821 0.769732756749244 5384 0.262882467340224 3 2 1 -6.84524150145155 LTS-028 NA NA NA NA LTS-028 chr19 54800224 54818557 18334 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.45624096838702 39 0.112640507547777 2 NA NA -5.79966121778777 LTS-028 chr19 54818558 54818656 99 * LILRA5 NA 0 NA 0.745 1 NA NA NA NA NA LTS-028 chr19 54818657 55281370 462714 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.322440530748464 47 0.0549678234026118 0.760170811253951 912 0.242071786184593 3 2 1 -6.82710324189605 LTS-028 chr19 55281371 55294931 13561 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.416 1 NA 0.375182771240889 13 0.290833990888978 1 1 0 -5.76939051831407 LTS-028 chr19 55294932 55299856 4925 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.427855475860983 2 0.0784888527117068 0.727467225774178 17 0.217237485255193 2 1 1 -6.75795457242837 LTS-028 chr19 55299857 55301506 1650 * c(KIR2DS4, KIR3DL1) NA 0 NA 1.221 1 NA NA NA NA NA LTS-028 chr19 55301507 55912946 611440 * c(RNU6-64P, RDH13, COX6B2, TMEM190, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, TMEM150B, FAM71E2, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, GP6, PPP1R12C, EPS8L1, NLRP2, PTPRH, RPL28, SYT5, TNNI3, TNNT1, BRSK1, KMT5C, NCR1) 0.435765942648814 59 0.0577037669687566 1.01414886648043 1725 0.261316651941914 4 2 2 -6.76087674696842 LTS-028 chr19 55912947 55918408 5462 * UBE2S NA 0 NA 0.991286000368443 22 0.230884615398483 4 NA NA -5.76484150941492 LTS-028 chr19 55918409 55918824 416 * UBE2S NA 0 NA 0.745 1 NA NA NA NA NA LTS-028 chr19 55918825 55966347 47523 * c(UBE2S, SHISA7, ISOC2) 0.385 1 NA 0.769095241416684 83 0.181450513536799 3 3 0 -5.7677266497243 LTS-028 chr19 55966348 59059729 3093382 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, PEG3-AS1, ZNF587B, ZNF865, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, U2AF2, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, ZNF544, SSC5D, ZNF547, ZIK1, NA NA NA NA NA NA NA NA NA LTS-028 ZNF776, ZSCAN1, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, ZNF581, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, RFPL4AL1, ZNF814, ZNF8, ZNF17, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ZNF606, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, ZNF835, ZNF264) 0.347634071677203 143 0.0664086006161278 0.802764637473321 5497 0.225863932531797 3 2 1 -6.75196819846553 LTS-028 NA NA NA NA LTS-028 chr19 59059730 59084001 24272 * c(MZF1-AS1, TRIM28, CHMP2A, MZF1, UBE2M) NA 0 NA 0.906404448320168 139 0.151596285376537 3 NA NA -5.77104339498201 LTS-028 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.485 1 NA 1.60121055632775 53 0.32044275995767 6 6 0 -5.7644136012925 LTS-028 chr20 168467 1559302 1390836 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.466201888033595 50 0.0256860877137959 1.57576549428 1888 0.545791267016281 6 3 3 -7.2087147111824 LTS-028 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.073 1 NA NA NA NA NA LTS-028 chr20 1569093 1592347 23255 * SIRPB1 NA 0 NA 0.132897669053459 39 0.155553970655765 1 NA NA -6.12086655260856 LTS-028 chr20 1592348 1600390 8043 * SIRPB1 NA 0 NA 1.526 1 NA NA NA NA NA LTS-028 chr20 1600391 4708979 3108589 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, SIRPB1, NOP56, CENPB, RNF24, HSPA12B, TMC2, C20orf141, SIRPA, STK35, ADRA1D, UBOX5, PRND, SPEF1, C20orf194, GNRH2, IDH3B, TGM6, ITPA, MIR103A2, OXT, PDYN, SMOX, C20orf27, AVP, AP5S1, SIRPG, PRNP, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, GFRA4, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, NA NA NA NA NA NA NA NA NA LTS-028 ADAM33, SLC4A11, ATRN, LZTS3, CDC25B) 0.452470491060959 124 0.0919479646655482 1.57641935808683 3702 0.34053284664375 6 3 3 -6.74299607245881 LTS-028 NA NA NA NA LTS-028 chr20 4708980 4712711 3732 * c(PRNT, PRND) 0.4 1 NA 1.75736309817939 21 0.666096939891885 7 7 0 -5.76442548626504 LTS-028 chr20 4712712 5098284 385573 * c(PRNT, TMEM230, PCNA, RASSF2, SLC23A2) 0.438260779034589 5 0.0569675346140238 1.57331328331471 409 0.417996979953793 6 3 3 -6.73651116000314 LTS-028 chr20 5098285 18441022 13342738 * c(SNAP25-AS1, PCNA-AS1, PET117, MACROD2-AS1, ISM1-AS1, LINC00658, DSTN, CHGB, PROKR2, SLX4IP, MACROD2, BANF2, ISM1, LINC00654, C20orf196, LRRN4, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, SNX5, LOC339593, LINC00851, PCNA, PCSK2, ESF1, TRMT6, PLCB4, HAO1, CRLS1, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, TMX4, GPCPD1, OTOR, PAK5, KAT14, OVOL2, RRBP1, BFSP1, ANKEF1, LOC643406, BMP2, SNAP25, SNRPB2, SNORD17, ZNF133, NA NA NA NA NA NA NA NA NA LTS-028 NDUFAF5, SEL1L2, MKKS, MCM8, CDS2, MGME1) 0.412869231140051 107 0.0734839375973926 1.85739674660228 4676 0.58073981347925 7 4 3 -6.74379983598302 LTS-028 NA NA NA NA LTS-028 chr20 18441023 18445875 4853 * DZANK1 NA 0 NA 3.528 1 NA NA NA NA NA LTS-028 chr20 18445876 18535109 89234 * c(MIR3192, SEC23B, POLR3F, RBBP9, DZANK1) 0.347162589538894 11 0.059950434072278 2.22616662145165 260 0.489397598755204 9 6 3 -6.75493493726545 LTS-028 chr20 18535110 18535735 626 * SEC23B NA 0 NA 1.898 1 NA NA NA NA NA LTS-028 chr20 18535736 24524186 5988451 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, CST8, SEC23B, CSTL1, CST9L, CST9, LINC00261, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, CFAP61, LOC284788, LINC00652, NXT1, FOXA2, INSM1, LINC00493, FLJ33581, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, KIZ, RALGAPA2, SLC24A3, NAPB, GZF1, NKX2-4, SSTR4, THBD, SYNDIG1, GGTLC1, DTD1) 0.412122373334591 55 0.0878071731881836 1.8751518136141 2346 0.419843981569271 7 4 3 -6.74368490405561 LTS-028 chr20 24524187 24565419 41233 * SYNDIG1 NA 0 NA 2.565 1 NA NA NA NA NA LTS-028 chr20 24565420 25056401 490982 * c(VSX1, APMAP, SYNDIG1, ACSS1, CST7) 0.358640180820726 14 0.0324122653490148 2.19337421214685 332 0.476599365831371 11 7 4 -6.85433288871442 LTS-028 chr20 25056402 25059442 3041 * VSX1 0.293 1 NA 2.05513683130187 31 0.346390984262718 8 8 0 -5.76442338962096 LTS-028 chr20 25059443 25753980 694538 * c(NANP, NINL, ABHD12, ZNF337, LOC284798, VSX1, PYGB, FAM182B, ENTPD6, GINS1) 0.299283573898056 8 0.0741734213082518 2.06565669675704 776 0.514200946899961 7 5 2 -6.75979198281309 LTS-028 chr20 25753981 25754004 24 * FAM182B NA 0 NA 1.516 1 NA NA NA NA NA LTS-028 chr20 25754005 26188981 434977 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.282218399296287 26 0.106381787047335 1.63900983213 82 1.1268691583855 7 5 2 -6.73962491319079 LTS-028 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.224 1 NA NA NA NA NA LTS-028 chr20 29625845 29625852 8 * FRG1BP 0.102 1 NA 1.828 1 NA NA NA NA NA LTS-028 chr20 29625853 29652182 26330 * c(MLLT10P1, FRG1BP) 0.261901672431832 22 0.129804490013657 1.29740281278378 52 0.606358764558958 4 3 1 -6.73478952252445 LTS-028 chr20 29652183 29652191 9 * FRG1BP 0.375 1 NA 1.035 1 NA NA NA NA NA LTS-028 chr20 29652192 29652219 28 * FRG1BP NA 0 NA 0.981712509600161 3 0.00115470053837919 4 NA NA -5.86875153280959 LTS-028 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 1.893 1 NA NA NA NA NA LTS-028 chr20 29845417 33880247 4034831 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, C20orf203, REM1, NA NA NA NA NA NA NA NA NA LTS-028 GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.370346868043461 96 0.0583393430488244 2.07743110973473 5568 0.439997668269634 8 5 3 -6.74402127204989 LTS-028 NA NA NA NA LTS-028 chr20 33880248 33890361 10114 * character(0) NA 0 NA 1.735 1 NA NA NA NA NA LTS-028 chr20 33890362 35867243 1976882 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.380349383967421 19 0.0407925861857188 1.96064213299963 3173 0.39650885776065 8 5 3 -6.78239235514596 LTS-028 chr20 35867244 58589080 22721837 * c(ADA, ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, LOC100287792, MIR4325, MIR3194, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, SLMO2-ATP5E, MIR4756, MIR4532, MIR5095, ATP9A, LINC00489, TRERNA1, SGK2, SYCP2, WFDC2, CEBPB, ARFGEF2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, PHACTR3, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, NA NA NA NA NA NA NA NA NA LTS-028 TSHZ2, C20orf85, ZNF831, SLC32A1, WFDC3, GCNT7, CBLN4, CTCFL, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, FAM209A, EYA2, ZHX3, SLC9A8, ADNP, ZMYND8, SPO11, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORD12C, SNORA71B, SNORA71A, GHRH, TP53TG5, MOCS3, GNAS, WFDC10B, LINC00494, LINC01270, HNF4A, LOC339568, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ARHGAP40, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, SPINT4, SUMO1P1, LBP, MIR296, MC3R, MMP9, ZFAS1, MYBL2, NFATC2, NNAT, SLC35C2, PRELID3B, PCK1, IFT52, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, PFDN4, PI3, PLCG1, PLTP, CTSA, PPP1R3D, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, CTNNBL1, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SLC12A5, PREX1, PTPN1, NCOA5, RPRD1B, CDH26, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, FAM217B, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, SNORD12, MIR645, TFAP2C, TGM2, TNNC2, TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, ZNF217, GDAP1L1, LINC01260, TTPAL, NPEPL1, ACTR5, PABPC1L, TUBB1, ZBP1, SLC2A10, FAM83D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 NCOA3, CHD6, PARD6B, RAE1, TOX2, BCAS1, KIAA1755, STX16, MATN4, DPM1, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, TTI1, SPATA2, MAFB) 0.368815815827614 314 0.0593678868590595 2.02937479934301 16675 0.475372098100097 8 5 3 -6.84826749933103 LTS-028 NA NA NA NA LTS-028 chr20 58589081 62907521 4318441 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, MIR4533, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, LSM14B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SLCO4A1, NPBWR2, LINC00176, NA NA NA NA NA NA NA NA NA LTS-028 C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PCMTD2, MRGBP, ARFGAP1, SLC2A4RG, PSMA7, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, SRMS, TAF4, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.353726089291424 134 0.0695243551250966 2.11304938305315 5734 0.499298456381806 8 5 3 -6.7965978627342 LTS-028 NA NA NA NA LTS-028 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.53275450410356 11 0.637574851220695 6 NA NA -5.76454027077413 LTS-028 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.444 1 NA 0.446460116702635 25 0.298126773929034 2 2 0 -5.7918703019318 LTS-028 chr21 9907272 10944816 1037545 * c(TEKT4P2, TPTE) 0.326985908521217 18 0.0868538702145266 0.667714252046539 95 0.330016414129093 3 2 1 -6.9761958788742 LTS-028 chr21 10944817 10959723 14907 * TPTE NA 0 NA 1.055 1 NA NA NA NA NA LTS-028 chr21 10959724 11098763 139040 * c(BAGE, TPTE, BAGE3) 0.290203190760728 15 0.0923730531723454 1.05544668227077 63 0.720891544935611 7 5 2 -6.78384313050686 LTS-028 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 0.765 1 NA NA NA NA NA LTS-028 chr21 14745307 15399864 654558 * c(MIR3156-3, POTED, ANKRD20A11P, NA) 0.306 1 NA 0.86257799022445 75 0.324810000178899 3 3 0 -5.77477398645484 LTS-028 chr21 15399865 15956136 556272 * c(SAMSN1-AS1, LIPI, ABCC13, RBM11, SAMSN1, HSPA13) 0.262762108363779 10 0.0666519983863116 0.961970918319344 301 0.290654275684054 4 3 1 -6.78559364203117 LTS-028 chr21 15956137 15964241 8105 * SAMSN1-AS1 NA 0 NA 1.102 1 NA NA NA NA NA LTS-028 chr21 15964242 19169218 3204977 * c(LINC01549, SAMSN1-AS1, BTG3, CXADR, C21orf91-OT1, USP25, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, C21orf91, NRIP1) 0.270173034655341 22 0.0441444892453852 1.06815381716984 742 0.329176175604041 4 3 1 -6.77217212627027 LTS-028 chr21 19169219 19506788 337570 * c(CHODL, CHODL-AS1, C21orf91) NA 0 NA 0.961661399029859 15 0.13287236983913 4 NA NA -5.91020974648314 LTS-028 chr21 19506789 19617118 110330 * CHODL NA 0 NA 1.426 1 NA NA NA NA NA LTS-028 chr21 19617119 19685405 68287 * c(CHODL, TMPRSS15) 0.429 1 NA 1.41517599735317 115 0.313505247724623 5 5 0 -5.76573424887445 LTS-028 chr21 19685406 48084989 28399584 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, ITGB2-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, RNU6-67P, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, HSF2BP, ADAMTS5, LINC00310, LINC00313, B3GALT5-AS1, TSPEAR-AS2, NA NA NA NA NA NA NA NA NA LTS-028 MCM3AP-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, DNMT3L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 DONSON, HUNK, HLCS, HMGN1, AIRE, PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, LINC00317, COL18A1-AS1, KRTAP10-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, KRTAP26-1, LINC00114, LSS, MIR155, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, TSPEAR, LINC00113, LINC00112, LINC00111, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, LOC642852, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.397094923774087 529 0.0664218721827093 1.30126988421884 18112 0.744180113407379 5 3 2 -6.75782047404708 LTS-028 NA NA NA NA LTS-028 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 2.237 1 NA NA NA NA NA LTS-028 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.262 1 NA 1.28876744937047 6 0.714573928995454 5 5 0 -5.76559724540976 LTS-028 chr22 16887896 22599057 5711162 * c(MIR301B, CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, COMT, CRKL, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, YDJC, CCDC116, HIC2, TSSK2, SDF2L1, PPIL2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, POM121L8P, YPEL1, NA NA NA NA NA NA NA NA NA LTS-028 ZDHHC8, SERPIND1, PI4KAP2, TPTEP1, CCDC188, LRRC74B, BCRP2, MIR130B, MIR185, ARVCF, THAP7-AS1, P2RX6P, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BID, TMEM191C, MRPL40, RTN4R, SLC7A4, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, ZNF74, C22orf29, THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RIMBP3, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F, DGCR2) 0.0396409390346675 202 0.0291030727400758 0.573426840549074 7010 0.179220726775405 2 2 0 -6.82141094078482 LTS-028 NA NA NA NA LTS-028 chr22 22599058 22599674 617 * VPREB1 0.051 1 NA 0.627286945344621 13 0.23087736782621 2 2 0 -5.76450366528972 LTS-028 chr22 22599675 22782150 182476 * c(VPREB1, BMS1P20) 0.146472645247101 9 0.156627566042649 0.668889410781899 153 0.378607458211194 2 2 0 -7.0471684569836 LTS-028 chr22 22782151 22868017 85867 * ZNF280B 0.04 1 NA 0.516649915900682 71 0.126528968537943 2 2 0 -5.78387272916121 LTS-028 chr22 22868018 24313868 1445851 * c(DDTL, IGLL5, ZNF280A, ZDHHC8P1, C22orf15, DDT, PRAME, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, ZNF70, GGTLC2, GUSBP11, DERL3, RAB36) 0.037286671476859 59 0.0182173384505556 0.577241907176656 1610 0.361974718271077 2 2 0 -6.74951836562842 LTS-028 chr22 24313869 24323131 9263 * c(DDTL, DDT) 0.257 1 NA 0.593763311470584 15 0.180929425862288 2 2 0 -5.76504632045955 LTS-028 chr22 24323132 24342340 19209 * GSTTP1 0.112059575474892 7 0.169250729758573 0.76140298361701 25 0.441146128472943 8 7 1 -6.8025773839601 LTS-028 chr22 24342341 24342396 56 * GSTTP1 NA 0 NA 0.492 1 NA NA NA NA NA LTS-028 chr22 24342397 24384316 41920 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0659421056409404 56 0.0193121992264226 0 NA NA -11.6629845704175 LTS-028 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.558 1 NA NA NA NA NA LTS-028 chr22 24400149 25003934 603786 * c(ADORA2A, SPECC1L, CABIN1, GGT1, GGT5, POM121L9P, LRRC75B, UPB1, SUSD2, ADORA2A-AS1, GSTTP2, SNRPD3, GUCD1) 0.0782807678394917 7 0.140841180395643 0.56393449219525 889 0.126692408996873 2 2 0 -6.79122757276965 LTS-028 chr22 25003935 25124095 120161 * c(GGT1, PIWIL3, BCRP3, POM121L10P) 0.032 1 NA 0.593967853035815 55 0.217752550074558 2 2 0 -5.77016762516137 LTS-028 chr22 25124096 42522613 17398518 * c(LOC100128531, LOC100130899, NDUFA6-AS1, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, NA NA NA NA NA NA NA NA NA LTS-028 SGSM1, EMID1, ANKRD54, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, ZC3H7B, TTC28, GCAT, CBX6, NPTXR, PES1, CBX7, SLC16A8, SEC14L2, RBFOX2, SEZ6L, RASD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, XRCC6, TMEM211, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TXN2, TMEM184B, GGA1, SEC14L3, SNORD43, INPP5J, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, SDC4P, LGALS1, LGALS2, LIF, LIMK2, LOC400927, SRRD, MIR33A, MB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MCM5, MFNG, MGAT3, MN1, MPST, PIWIL3, MIAT, SHISA8, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, PMM1, POLR2F, MIEF1, TUG1, CCDC157, ZMAT5, SEPT3, EIF4ENIF1, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SLC5A1, SMTN, SLC5A4, GATSL3, SOX10, SREBF2, SSTR3, ST13, TCN2, TEF, TIMP3, TOP1P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, CENPM, NOL12, C22orf46, KCTD17, CCDC134, FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1656, MICALL1, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, IGLL3P, LRP5L, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, LARGE1, GRAP2, PICK1, GAL3ST1, GTPBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.0366074879182704 369 0.0321728293427909 0.56379122406895 20245 0.164160964986845 2 2 0 -6.7686974356974 LTS-028 NA NA NA NA LTS-028 chr22 42522614 42523409 796 * c(NDUFA6-AS1, CYP2D6) 0.423 1 NA 0.621330937993755 7 0.257486476760015 2 2 0 -5.76449189569001 LTS-028 chr22 42523410 42537271 13862 * c(NDUFA6-AS1, CYP2D7, CYP2D6) 0.19470442495611 9 0.155700656531835 0.583241377361322 75 0.230683727172035 5 4 1 -6.84371748647891 LTS-028 chr22 42537272 42537597 326 * CYP2D7 0.069 1 NA 0.484230926917721 8 0.274136957429259 2 2 0 -5.76446297116412 LTS-028 chr22 42537598 42777206 239609 * c(NFAM1, CYP2D7, OGFRP1, TCF20) 0.0458729666979065 10 0.0180754591151158 0.570928627913308 218 0.166985082501018 2 2 0 -6.94444465880236 LTS-028 chr22 42777207 42779699 2493 * NFAM1 0.057 1 NA 0.629449008900403 49 0.14744588826409 2 2 0 -5.76539349435737 LTS-028 chr22 42779700 42896795 117096 * c(NFAM1, SERHL) 0.0428162338159264 2 0.0190918830920368 0.561302336388614 73 0.218827974143811 2 2 0 -6.83152282161274 LTS-028 chr22 42896796 42898652 1857 * SERHL NA 0 NA 0.944 1 NA NA NA NA NA LTS-028 chr22 42898653 42952604 53952 * c(SERHL2, RRP7A, RRP7BP, SERHL) 0.382677840417287 6 0.2305017715044 0.97803921308395 109 0.344178879737297 3 2 1 -6.76115301076192 LTS-028 chr22 42952605 42956189 3585 * c(SERHL2, RRP7BP) NA 0 NA 0.728 1 NA NA NA NA NA LTS-028 chr22 42956190 42967235 11046 * c(SERHL2, RRP7BP) 0.027 1 NA 0.536803603825882 15 0.228936194063719 2 2 0 -5.76460868904902 LTS-028 chr22 42967236 42970263 3028 * c(SERHL2, RRP7BP) 0.034 1 NA 0.506562719830824 18 0.132884391250096 2 2 0 -5.76538997023607 LTS-028 chr22 42970264 51206413 8236150 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, MCAT, LOC284933, NA NA NA NA NA NA NA NA NA LTS-028 RPL23AP82, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, CELSR1, PPP6R2, ZBED4, SCO2) 0.0391109302068868 217 0.0374199623761087 0.569520847598576 7921 0.173114139458321 2 2 0 -6.80247381918713 LTS-028 NA NA NA NA LTS-028 chr22 51206414 51220846 14433 * c(RABL2B, RPL23AP82) NA 0 NA 0.553107634723247 51 0.0729054235589762 2 NA NA -5.76456366137473 LTS-028 chrX 2699993 2700027 35 * XG 0.056 1 NA 0.746 1 NA NA NA NA NA LTS-028 chrX 2700028 47057511 44357484 * c(GS1-600G8.3, LINC01546, SUPT20HL1, PHKA2-AS1, LOC100132831, LINC01203, SCARNA9L, CLDN34, MIR23C, PIR-FIGF, MIR4768, MIR4770, MIR4767, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, MSL3, IL1RAPL1, CA5B, CLCN4, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, TCEANC, ARX, NA NA NA NA NA NA NA NA NA LTS-028 FAM9A, FAM9B, FAM9C, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, MXRA5, EGFL6, AMELX, VCX, GK, GPR82, GLRA2, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, GRPR, SH3KBP1, HCCS, CA5BP1, LANCL3, MPC1L, DCAF8L2, ARSH, MAGEB5, TLR8-AS1, SHROOM2, ANOS1, MAP3K15, LOC389906, LOC392452, ARHGAP6, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 MAGEB3, MAGEB4, STS, MAOA, MAOB, ARSD, ARSE, ARSF, VCX3B, MID1, FTH1P18, FAM47C, NDP, NHS, GPR143, OTC, TLR7, TLR8, MBTPS2, VCX2, VCX3A, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, NDUFB11, PPEF1, BCOR, GEMIN8, KRBOX4, TXLNG, WWC3, PRKX, PRPS2, PRRG1, CTPS2, CHST7, TMEM27, NLGN4X, MID1IP1, ACE2, RBBP7, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TRAPPC2, ZNF674, NA, MAGEB17, BMX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 SMS, SCARNA23, CDKL5, TBL1X, DYNLT3, TSPAN7, TMSB4X, MIR651, LINC01545, LOC729609, UBA1, KDM6A, XG, XK, ZFX, APOO, S100G, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, PUDP, PNPLA4, ZRSR2, USP9X, RBM10, TMEM47, SRPX, SLC9A7, OFD1, PIR, INE2, CASK, AP1S2, GYG2, RGN, REPS2, ATXN3L, MED14, RAB9A, SYAP1, SYTL5, PCYT1B, FRMPD4, JADE3) 0.0864912057432148 156 0.0604733475598558 0.313729103495021 16377 0.0897345241610858 1 1 0 -10.6636538587096 LTS-028 NA NA NA NA LTS-028 chrX 47057512 47057636 125 * UBA1 NA 0 NA 0.398 1 NA NA NA NA NA LTS-028 chrX 47057637 47104870 47234 * c(CDK16, UBA1, USP11, INE1) 0.082 1 NA 0.369615384651988 356 0.091533807164844 1 1 0 -5.91365016922801 LTS-028 chrX 47104871 47106407 1537 * USP11 NA 0 NA 0.261 1 NA NA NA NA NA LTS-028 chrX 47106408 50653775 3547368 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, ELK1, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, TBC1D25, FOXP3, CFP, PLP2, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA NA NA NA NA NA NA NA NA LTS-028 RBM3, NA, GAGE2B, GAGE13, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, USP11, UXT, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, PAGE4) 0.0634891608309206 25 0.0303307874389483 0.327901148942314 4469 0.0829941233820095 1 1 0 -8.64477997565438 LTS-028 NA NA NA NA LTS-028 chrX 50653776 52891542 2237767 * c(XAGE5, NUDT10, GSPT2, SSX7, SSX8, SPANXN5, NUDT11, XAGE1B, MAGED4B, BMP15, MAGED1) 0.287 1 NA 0.329507205322776 319 0.0863422842156246 1 1 0 -7.12627275544747 LTS-028 chrX 52891543 53254618 363076 * c(XAGE3, GPR173, TSPYL2, FAM156B, KDM5C) 0.299219772487334 4 0.0263612720987942 0.343119445206291 371 0.0743922900672293 3 2 1 -15.1290763853084 LTS-028 chrX 53254619 53262033 7415 * character(0) NA 0 NA 0.204 1 NA NA NA NA NA LTS-028 chrX 53262034 54577469 1315436 * c(HUWE1, RIBC1, FGD1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, GNL3L, FAM120C, WNK3, SMC1A, TSR2) 0.0704442616616982 4 0.0217102126505784 0.304783461282075 1911 0.0708461536010368 1 1 0 -6.82597546122044 LTS-028 chrX 54577470 54577568 99 * GNL3L NA 0 NA 0.292 1 NA NA NA NA NA LTS-028 chrX 54577569 57146035 2568467 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, USP51, SPIN3, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, UQCRBP1, PFKFB1, GNL3L, LINC01420, SNORA11, TRO, FAM104B, PAGE5) 0.20371888513761 18 0.0903814718707122 0.348432869698674 1147 0.113448693692094 1 1 0 -9.87707175515297 LTS-028 chrX 57146036 57937169 791134 * c(FAAH2, ZXDB, SPIN2B, SPIN2A, ZXDA) NA 0 NA 0.33387991967993 343 0.0750573270186281 1 NA NA -6.65606699132069 LTS-028 chrX 61999880 62855666 855787 * c(SPIN4, ARHGEF9, LINC01278) 0.109 1 NA 0.319456778975903 115 0.0754324759548591 1 1 0 -6.14279048904942 LTS-028 chrX 62855667 85134179 22278513 * c(MIR374B, UBE2DNL, MIR1468, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, CHM, VSIG4, COX7B, MAP2K4P1, AMER1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, ASB12, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, FAM46D, DLG3, EDA, EFNB1, ZCCHC5, ABCB7, ARHGEF9, KIF4A, BRWD3, ITGB1BP2, GJB1, FAM155B, INGX, RPS6KA6, P2RY10, CXCR3, LPAR4, YIPF6, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, ZC3H12B, SATL1, DGAT2L6, NA NA NA NA NA NA NA NA NA LTS-028 RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, CITED1, MSN, NAP1L2, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, POU3F4, ATRX, ERCC6L, GDPD2, JPX, MTMR8, HDAC8, ZC4H2, TEX11, MAGEE1, EDA2R, BCYRN1, RPS4X, PJA1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 ZNF711, HMGN5, POF1B, LAS1L, FRMD8P1, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, STARD8, HEPH, MED12) 0.0622919299042645 43 0.0311558970739188 0.31766037046389 9627 0.0842074500341843 1 1 0 -10.3699258750756 LTS-028 NA NA NA NA LTS-028 chrX 85134180 85149133 14954 * CHM NA 0 NA 0.536 1 NA NA NA NA NA LTS-028 chrX 85149134 86085547 936414 * c(CHM, DACH2) 0.0679308765875554 4 0.0188502873541316 0.580478036400065 248 0.169057142089198 2 2 0 -8.19029911352498 LTS-028 chrX 86085548 86405850 320303 * DACH2 0.043 1 NA 0.655233157547549 47 0.320982927549088 2 2 0 -5.81162752815693 LTS-028 chrX 86405851 101473106 15067256 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, PABPC5, CSTF2, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, PCDH11X, FAM133A, RPA4, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, CPXCR1, TAF7L, ARMCX6, NXF5, KLHL4, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, ZMAT1, TGIF2LX, SYTL4, ARMCX2) 0.032681263223303 23 0.0176657592925806 0.596083099430392 3117 1.05670508624817 2 2 0 -6.77765123120927 LTS-028 chrX 101473107 101609294 136188 * character(0) NA 0 NA 0.406 1 NA NA NA NA NA LTS-028 chrX 101609295 101625090 15796 * character(0) NA 0 NA 0.123164837259007 39 0.248414098035043 1 NA NA -5.88267099799313 LTS-028 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.582 1 NA NA NA NA NA LTS-028 chrX 101768565 111914456 10145892 * c(LINC00630, TRPC5OS, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, SLC25A53, LINC00890, GLRA4, PAK3, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, NA NA NA NA NA NA NA NA NA LTS-028 BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, ZCCHC18, ARMCX5, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.0337477833010566 25 0.0239417348299297 0.582064943665134 5768 0.143855105596448 2 2 0 -7.19912565757083 LTS-028 NA NA NA NA LTS-028 chrX 111914457 139793912 27879456 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, MIR4329, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, SLC6A14, DCAF12L1, ADGRG4, ACTRT1, GPR119, RBMXL3, DOCK11, AMOT, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, AGTR2, ELF4, CT83, SLC25A43, INTS6L, ZNF449, NA NA NA NA NA NA NA NA NA LTS-028 F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, HTR2C, DCAF12L2, LHFPL1, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IL13RA2, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, LUZP4, TFDP3, VGLL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 RBMX2, STK26, PLS3, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, LRCH2, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, SNORA35, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-028 XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.0338419282059227 103 0.0211506341322358 0.552699114420805 10481 0.156867774508569 2 2 0 -6.80816895172392 LTS-028 NA NA NA NA LTS-028 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 0.711 1 NA NA NA NA NA LTS-028 chrX 139795670 140008385 212716 * c(MIR320D2, CDR1, LINC00632) 0.0467501941137722 2 0.0205060966544099 0.625774243554773 50 0.183085286248831 2 2 0 -6.97210149465156 LTS-028 chrX 140008386 140967165 958780 * c(MAGEC3, NA, NA, LDOC1, SPANXA2-OT1, SPANXC) 0.079 1 NA 0.595365846819356 67 0.169561857233026 2 2 0 -5.84505531008879 LTS-028 chrX 140967166 141291502 324337 * c(MAGEC3, MAGEC2, MAGEC1) 0.170916233477333 9 0.172596671784572 0.604268535494816 185 0.153248346289358 2 2 0 -7.13464935248161 LTS-028 chrX 141291503 142804493 1512991 * c(SLITRK4, SPANXN3, SPANXN4, SPANXN2, MAGEC2) 0.048 1 NA 0.581139987197252 233 0.16186659136288 2 2 0 -5.81861138639427 LTS-028 chrX 142804494 152774423 9969930 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR2114, MIR514B, MIR4330, MAMLD1, MAGEA10-MAGEA5, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, ZFP92, CSAG1, FMR1NB, VMA21, FMR1, AFF2, GABRA3, GABRE, PNMA3, HMGB3, IDS, UBE2NL, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MTM1, NA NA NA NA NA NA NA NA NA LTS-028 SPANXN1, SPANXN2, NSDHL, CXorf40B, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, BGN, MIR767, ZNF185, PRRG3, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, TMEM257, CXorf40A, GPR50) 0.0449329527872123 57 0.0584125366346149 0.58020663282738 3646 0.165345551720218 2 2 0 -7.05253271601674 LTS-028 NA NA NA NA LTS-028 chrX 152774424 153010083 235660 * c(BCAP31, PNCK, DUSP9, ABCD1, ATP2B3, BGN, SLC6A8, FAM58A) 0.316 1 NA 0.571079168838507 589 0.119521453736488 2 2 0 -5.76931391186703 LTS-028 chrX 153010084 153176254 166171 * c(ABCD1, SRPK3, IDH3G, L1CAM, ARHGAP4, PLXNB3, AVPR2, PDZD4, SSR4) 0.0974551921010342 9 0.16673415300345 0.570065899484401 784 0.127625153328921 2 2 0 -6.81857670676635 LTS-028 chrX 153176255 153420176 243922 * c(MIR718, MIR3202-2, MIR3202-1, HCFC1, IRAK1, ARHGAP4, MECP2, OPN1LW, RENBP, NAA10, TMEM187) 0.041 1 NA 0.561844966046017 753 0.123488877364081 2 2 0 -5.76475166216986 LTS-028 chrX 153420177 154507173 1086997 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, TEX28, DKC1, DNASE1L1, EMD, F8, FLNA, G6PD, OPN1MW, GDI1, SNORA70, CTAG2, MPP1, MTCP1, ATP6AP1, PLXNA3, OPN1LW, FAM3A, RPL10, FUNDC2, SNORA36A, SNORA56, TAZ, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.0389278504330059 37 0.022231750960074 0.570028388007411 2315 0.16946702095956 2 2 0 -6.76098530580279 LTS-028 chrX 154507174 154528381 21208 * CLIC2 NA 0 NA 0.494033737175507 28 0.0684853129892687 2 NA NA -5.80494973822748 LTS-028 chrX 154528382 154580269 51888 * CLIC2 NA 0 NA 0.147490033673787 40 0.271171521791595 1 NA NA -5.96834884934636 LTS-028 chrX 154580270 154774986 194717 * TMLHE NA 0 NA 1.10748836856701 39 4.15558765744118 4 NA NA -5.76441509203147 LTS-028 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0457877018429616 25 0.0313715901201496 0 NA NA -10.2582096994852 LTS-028 chrY 13309514 13310602 1089 * character(0) 0.429 1 NA 0.282234796949126 7 0.281562900018214 1 1 0 -5.7644369184485 LTS-028 chrY 13310603 13310610 8 * character(0) 0.029 1 NA 0.066 1 NA NA NA NA NA LTS-028 chr1 65893 69511 3619 * OR4F5 0.27 1 NA 2.16608545676859 2 1.84272027177214 12 12 0 -5.76441058546515 LTS-029 chr1 69512 1563174 1493663 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, NA NA NA NA NA NA NA NA NA LTS-029 ISG15) 0.238999577607058 51 0.117658332204969 1.3755263528403 2757 0.402189876102582 8 6 2 -6.79190966719101 LTS-029 NA NA NA NA LTS-029 chr1 1563175 1567616 4442 * c(MIB2, MMP23B) NA 0 NA 1.43594260208227 41 0.266015717947496 8 NA NA -5.76441236643022 LTS-029 chr1 1567617 1569873 2257 * MMP23B NA 0 NA 2.258 1 NA NA NA NA NA LTS-029 chr1 1569874 1575836 5963 * c(MMP23B, CDK11B) 0.39 1 NA 1.76508740575682 41 0.729885067798432 10 10 0 -5.76441050143295 LTS-029 chr1 1575837 1603048 27212 * c(SLC35E2B, CDK11B) 0.348010075569654 16 0.0953229379530447 1.59059884789292 199 0.608329181468171 9 6 3 -6.73388958179838 LTS-029 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.892 1 NA NA NA NA NA LTS-029 chr1 1606859 1633011 26153 * c(SLC35E2B, MMP23A, CDK11B) 0.327 1 NA 0.556597428985886 41 0.39069176141688 3 3 0 -5.76557733825893 LTS-029 chr1 1633012 1636501 3490 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 1.11353039894107 39 0.3235675209609 6 NA NA -5.76441022495148 LTS-029 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.071 1 NA NA NA NA NA LTS-029 chr1 1637054 1645617 8564 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.390528436447308 41 0.342771343467389 2 NA NA -5.76539064619857 LTS-029 chr1 1645618 1645622 5 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.878 1 NA NA NA NA NA LTS-029 chr1 1645623 1666251 20629 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.361708370072542 22 0.0792083667800654 0.850048018502694 152 0.394141575696129 3 2 1 -6.74121289482916 LTS-029 chr1 1666252 1669734 3483 * c(SLC35E2B, SLC35E2) 0.21 1 NA 0.768394333024126 3 0.393161968320097 4 4 0 -5.76441613650558 LTS-029 chr1 1669735 1670428 694 * c(SLC35E2B, SLC35E2) 0.18 1 NA 1.04616311869759 7 0.302678833403455 6 6 0 -5.76442903458099 LTS-029 chr1 1670429 4847594 3177166 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, RER1, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, CALML6, DFFB, MEGF6, FAAP20, GABRD, ARHGEF16, GNB1, LOC284661, C1orf174, TMEM52, HES5, SMIM1, LINC00982, WRAP73, PEX10, PANK4, PRKCZ, AJAP1, TP73-AS1, LRRC47, PRDM16, SKI, NADK, MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, CEP104, SLC35E2) 0.253604434876825 78 0.0675974254052025 1.41838667286436 3020 0.360091767036147 8 6 2 -6.77940930826704 LTS-029 chr1 4847595 5624216 776622 * MIR4417 NA 0 NA 1.52672057092545 15 0.104564311493431 8 NA NA -5.88442543956299 LTS-029 chr1 5624217 5716354 92138 * character(0) NA 0 NA 0.654 1 NA NA NA NA NA LTS-029 chr1 5716355 6157434 441080 * c(MIR4689, NPHP4, KCNAB2) 0.389 1 NA 1.17520155272619 255 0.302832737774645 6 6 0 -5.77213712920401 LTS-029 chr1 6157435 7796549 1639115 * c(MIR4252, ACOT7, PHF13, CAMTA1, ICMT, CHD5, ZBTB48, GPR153, RNF207, HES3, HES2, DNAJC11, PLEKHG5, RPL22, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, THAP3, KLHL21) 0.328010487180706 45 0.070906789006926 1.11105567107091 2018 0.459569492729703 6 4 2 -6.78875177059863 LTS-029 chr1 7796550 7796892 343 * CAMTA1 NA 0 NA 0.91 1 NA NA NA NA NA LTS-029 chr1 7796893 12838099 5041207 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, TNFRSF9, DRAXIN, CENPS, PRAMEF12, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, NA NA NA NA NA NA NA NA NA LTS-029 PIK3CD-AS1, NMNAT1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.335709034993938 143 0.0734718482078015 1.05349259618033 6857 0.380797370786867 6 4 2 -6.82301759643537 LTS-029 NA NA NA NA LTS-029 chr1 12838100 12853262 15163 * PRAMEF1 NA 0 NA 1.833 1 NA NA NA NA NA LTS-029 chr1 12853263 12920029 66767 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1, PRAMEF2) 0.29548968448783 6 0.0938438419219219 1.6770845993819 62 0.669717918156237 11 8 3 -6.73986955973098 LTS-029 chr1 12920030 16362743 3442714 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, PRAMEF9, PRAMEF10, TMEM82, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, PRAMEF2, PRAMEF22, NA, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.337864370803882 89 0.06820781237549 1.0556843066416 2496 0.326707678657718 6 4 2 -6.81001448991257 LTS-029 chr1 16362744 16363196 453 * CLCNKB NA 0 NA 1.549 1 NA NA NA NA NA LTS-029 chr1 16363197 16386476 23280 * c(CLCNKB, FAM131C) 0.230405910145488 11 0.0755001505115899 1.73929267673796 136 0.46873898581105 14 11 3 -6.74058566146863 LTS-029 chr1 16386477 16386495 19 * FAM131C 0.208 1 NA 1.335 1 NA NA NA NA NA LTS-029 chr1 16386496 16948572 562077 * c(CROCCP3, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.390669400989534 20 0.0629055055744642 1.02292759244841 726 0.228415017318895 5 3 2 -6.78074927107575 LTS-029 chr1 16948573 16950322 1750 * CROCCP2 NA 0 NA 0.66 1 NA NA NA NA NA LTS-029 chr1 16950323 16978916 28594 * c(MST1P2, CROCCP2) 0.360699969877871 10 0.0747799735520443 0.522778230494193 111 0.506691565134592 3 2 1 -6.73557739075488 LTS-029 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.144 1 NA NA NA NA NA LTS-029 chr1 17009684 17012093 2410 * character(0) 0.244106056195916 5 0.021824298385057 1.44910579193416 56 0.413196364987594 9 7 2 -6.73362940063677 LTS-029 chr1 17012094 17017582 5489 * character(0) NA 0 NA 0.702 1 NA NA NA NA NA LTS-029 chr1 17017583 17091039 73457 * c(MST1L, ESPNP, CROCC) 0.303827304411181 19 0.0927639587705464 0.940032036307441 197 0.383625878585911 4 3 1 -6.75814485422826 LTS-029 chr1 17091040 17197512 106473 * CROCC NA 0 NA 1.1 1 NA NA NA NA NA LTS-029 chr1 17197513 19229125 2031613 * c(MIR4695, PADI2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.296029448491782 47 0.0987406923680642 1.17130656233918 1784 0.466715650392415 7 5 2 -6.78392810223522 LTS-029 chr1 19229126 19229155 30 * ALDH4A1 NA 0 NA 1.086 1 NA NA NA NA NA LTS-029 chr1 19229156 22313590 3084435 * c(LOC100506730, LOC100506801, MINOS1-NBL1, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, TMCO4, PLA2G2D, PLA2G2E, HSPG2, HTR6, LINC01141, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RAP1GAP, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, USP48, NBPF3, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.347694311944435 116 0.0991765417414023 1.07577220100458 4578 0.292339504424922 6 4 2 -6.76217848094358 LTS-029 chr1 22313591 22315677 2087 * CELA3B NA 0 NA 0.418 1 NA NA NA NA NA LTS-029 chr1 22315678 22404928 89251 * c(CELA3A, CELA3B, LINC00339, CDC42) 0.183264406845151 3 0.0870229854693575 0.691239367643185 62 0.404578272112416 6 5 1 -6.83922681249062 LTS-029 chr1 22404929 22405070 142 * CDC42 NA 0 NA 1.22 1 NA NA NA NA NA LTS-029 chr1 22405071 23289661 884591 * c(MIR4253, MIR4684, EPHA8, EPHB2, WNT4, C1QA, C1QB, C1QC, ZBTB40, CDC42) 0.381554299898275 5 0.0371510430539978 1.12077219911326 717 0.231862510760412 5 3 2 -7.13320206786701 LTS-029 chr1 23289662 24088584 798923 * c(MIR3115, TCEB3-AS1, HNRNPR, ZNF436-AS1, E2F2, KDM1A, MDS2, HTR1D, ID3, ASAP3, RPL11, TCEA3, TCEB3, C1orf234, LUZP1, ZNF436) 0.279431372603882 5 0.168059513268366 1.01906145070037 1169 0.232962184677156 5 4 1 -6.81061529081618 LTS-029 chr1 24088585 24104906 16322 * c(TCEB3-AS1, PITHD1) NA 0 NA 1.194 1 NA NA NA NA NA LTS-029 chr1 24104907 24133548 28642 * c(LYPLA2, GALE, HMGCL, PITHD1) NA 0 NA 1.40571376921395 174 0.240566189551604 8 NA NA -5.7646594212814 LTS-029 chr1 24133549 24485941 352393 * c(MIR378F, CNR2, MYOM3, IFNLR1, FUCA1, HMGCL, PNRC2, IL22RA1) 0.334040476012217 8 0.0328565605538464 1.07353301920966 730 0.33713171756796 6 4 2 -6.86914088514997 LTS-029 chr1 24485942 24487847 1906 * IFNLR1 0 1 NA 1.25119615993561 7 1.68210170407652 7 7 0 -5.76441036554634 LTS-029 chr1 24487848 25586803 1098956 * c(RCAN3AS, SRRM1, RCAN3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, RSRP1, NIPAL3, GRHL3, RUNX3, STPG1) 0.199644884946243 9 0.204463797393192 1.03940265746818 994 0.308184797300619 6 5 1 -6.76804455439545 LTS-029 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 0.026 1 NA NA NA NA NA LTS-029 chr1 25598904 25656954 58051 * c(RSRP1, RHD) NA 0 NA 0.0778446251725523 83 0.0475285521313764 0 NA NA -7.92616914018839 LTS-029 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.274 1 NA NA NA NA NA LTS-029 chr1 25666924 25711160 44237 * c(TMEM50A, RHCE) 0.213582624309669 3 0.202663103038845 1.01128776929239 77 0.646548252535836 6 5 1 -6.73514721873113 LTS-029 chr1 25711161 25747399 36239 * RHCE 0.331 1 NA 1.20094191524813 45 0.429238064669964 7 7 0 -5.7649071753804 LTS-029 chr1 25747400 26802465 1055066 * c(MIR3917, CNKSR1, CD52, PDIK1L, PAQR7, EXTL1, ZNF683, LDLRAP1, HMGN2, CATSPER4, STMN1, PAFAH2, ZNF593, AIM1L, TMEM57, MTFR1L, MAN1C1, SELENON, RHCE, LOC646471, CEP85, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, SH3BGRL3, TRIM63, UBXN11) 0.347116912895636 57 0.0658843874242272 1.06984974924098 1995 0.296276256342365 6 4 2 -6.74673417220619 LTS-029 chr1 26802466 26802504 39 * HMGN2 NA 0 NA 0.996 1 NA NA NA NA NA LTS-029 chr1 26802505 26856415 53911 * c(HMGN2, RPS6KA1) NA 0 NA 0.658 1 NA NA NA NA NA LTS-029 chr1 26856416 26870730 14315 * RPS6KA1 0.495 1 NA 0.692722769352641 25 0.128540810640045 3 3 0 -5.77094902792631 LTS-029 chr1 26870731 29557498 2686768 * c(MIR1976, WASF2, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, FAM76A, EPB41, EYA3, FGR, DNAJC8, WDTC1, STX12, IFI6, RNU11, AHDC1, SMPDL3B, SFN, GPR3, TRNP1, CD164L2, TMEM200B, OPRD1, MECR, YTHDF2, GPN2, MED18, TRNAU1AP, PPP1R8, XKR8, PIGV, PTAFR, RPA2, RPS6KA1, GPATCH3, SRSF4, ACTG1P20, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, ARID1A, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, NA NA NA NA NA NA NA NA NA LTS-029 SYTL1, SNHG12, FCN3, MAP3K6, ATPIF1, THEMIS2) 0.435746367753723 47 0.0759189584466151 0.736127063444663 3826 0.169774974277971 4 2 2 -6.977856509256 LTS-029 NA NA NA NA LTS-029 chr1 29557499 29563149 5651 * PTPRU NA 0 NA 0.745 1 NA NA NA NA NA LTS-029 chr1 29563150 32266218 2703069 * c(MATN1-AS1, MIR4254, MIR4420, PTPRU, COL16A1, LINC01225, FABP3, LINC01226, HCRTR1, SERINC2, MATN1, ZCCHC17, PEF1, ADGRB2, TINAGL1, SNORD103C, SNORD103A, LAPTM5, NKAIN1, SPOCD1, SNRNP40, SDC3, PUM1) 0.466475240859346 43 0.0318729308493937 0.802946490969217 1838 0.204613563416519 4 2 2 -7.79886078575057 LTS-029 chr1 32266219 32267238 1020 * SPOCD1 NA 0 NA 0.558 1 NA NA NA NA NA LTS-029 chr1 32267239 33292189 1024951 * c(FAM229A, KHDRBS1, DCDC2B, TXLNA, KPNA6, HDAC1, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.425623820252545 23 0.110360655617391 0.725044037548396 1739 0.180514625519145 4 2 2 -6.85028827432564 LTS-029 chr1 33292190 33322240 30051 * S100PBP 0 1 NA 0.774015705983515 41 0.48262801536951 4 4 0 -5.76442484108283 LTS-029 chr1 33322241 33586118 263878 * c(AZIN2, TMEM54, RNF19B, AK2, FNDC5, HPCA, S100PBP) 0.406754291826355 4 0.236342265933681 0.748784269655894 441 0.217007802849643 4 2 2 -6.7424389510946 LTS-029 chr1 33586119 33611028 24910 * c(AZIN2, TRIM62) NA 0 NA 1.091 1 NA NA NA NA NA LTS-029 chr1 33611029 36180059 2569031 * c(MIR3605, TMEM35B, SMIM12, CSMD2, GJB4, HMGB4, A3GALT2, C1orf216, ZNF362, PHC2, NCDN, GJA4, GJB3, GJB5, TFAP2E, CSMD2-AS1, TRIM62, PSMB2, DLGAP3, SFPQ, LOC653160, ZSCAN20, ZMYM1, KIAA0319L, C1orf94, ZMYM4, ZMYM6) 0.258717617522283 25 0.0676539479015576 1.39245951103418 2292 0.364664521452321 8 6 2 -6.77056060340821 LTS-029 chr1 36180060 36360800 180741 * c(C1orf216, AGO4, AGO1, CLSPN) NA 0 NA 1.63084791598028 404 0.39411694438817 9 NA NA -5.7644984273295 LTS-029 chr1 36360801 38511822 2151022 * c(MIR4255, MIR5581, SF3A3, C1orf122, OSCP1, COL8A2, CSF3R, MANEAL, AGO3, FHL3, AGO1, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, INPP5B, MTF1, UTP11, POU3F1, ADPRHL2, C1orf109, CDCA8, EVA1B, MAP7D1, MEAF6, MRPS15, LINC01137, DNALI1, YRDC, SH3D21, SNIP1, ZC3H12A, STK40, LSM10, THRAP3) 0.274817603304866 22 0.0923507453849733 1.35329408437739 2842 0.295510850771124 8 6 2 -6.79951543938993 LTS-029 chr1 38511823 38678125 166303 * c(MIR3659, LINC01343, POU3F1) NA 0 NA 1.38987704671025 24 0.219745636879407 8 NA NA -5.76776504647387 LTS-029 chr1 38678126 39175347 497222 * LINC01343 NA 0 NA 2.498 1 NA NA NA NA NA LTS-029 chr1 39175348 39325063 149716 * RRAGC 0.347 1 NA 2.09763901648838 63 0.458470112253792 12 12 0 -5.76442331766176 LTS-029 chr1 39325064 41327086 2002023 * c(NFYC-AS1, GJA9-MYCBP, ZMPSTE24, PPIE, CAP1, TMCO2, ZNF684, COL9A2, CITED4, MACF1, MYCBP, HEYL, ZFP69, BMP8A, MIR30C1, MIR30E, MYCL, NDUFS5, NFYC, HPCAL4, TRIT1, RHBDL2, PPT1, RLF, OXCT2, RRAGC, KIAA0754, SMAP2, EXO5, ZFP69B, BMP8B, SNORA55, PPIEL, AKIRIN1, NT5C1A, MFSD2A, PABPC4, KCNQ4, RIMS3) 0.389134703586776 54 0.0999823412081309 2.18134260409136 3278 0.642547675813076 13 8 5 -6.73976090959746 LTS-029 chr1 41327087 41327167 81 * CITED4 NA 0 NA 1.506 1 NA NA NA NA NA LTS-029 chr1 41327168 41973066 645899 * c(SLFNL1-AS1, CTPS1, CITED4, EDN2, SLFNL1, SCMH1, HIVEP3) 0.420844393205027 15 0.120312964903245 1.89113793790302 455 0.497136577760359 11 6 5 -6.73439954356889 LTS-029 chr1 41973067 41973095 29 * HIVEP3 0.498 1 NA 0.687 1 NA NA NA NA NA LTS-029 chr1 41973096 43885575 1912480 * c(LOC100129924, PPIH, EBNA1BP2, MED8, ERMAP, TMEM125, CLDN19, CFAP57, C1orf210, FOXJ3, SZT2, RIMKLA, GUCA2A, GUCA2B, SVBP, MPL, SLC2A1-AS1, FAM183A, YBX1, ZNF691, HIVEP3, P3H1, ELOVL1, SLC2A1, TIE1, CCDC30, C1orf50, PPCS, ZMYND12, CDC20) 0.387461611120981 34 0.077742851635325 1.65912676177538 2019 0.404132171129535 10 6 4 -6.77365559842515 LTS-029 chr1 43885576 43885839 264 * SZT2 NA 0 NA 2.171 1 NA NA NA NA NA LTS-029 chr1 43885840 44202114 316275 * c(KDM4A-AS1, SZT2, PTPRF, ST3GAL3, HYI, KDM4A) 0.361588285343051 13 0.0378233071544856 1.98883855589318 773 0.451863609834909 11 7 4 -6.75282344564049 LTS-029 chr1 44202115 44257706 55592 * ST3GAL3 NA 0 NA 1.598 1 NA NA NA NA NA LTS-029 chr1 44257707 47184569 2926863 * c(EFCAB14-AS1, MKNK1-AS1, MIR5584, TSPAN1, AKR1A1, TESK2, LRRC41, KIF2C, TOE1, PLK3, CCDC163, DMBX1, KLF17, KNCN, MOB3C, CCDC24, BTBD19, CCDC17, DPH2, FAAH, MAST2, MMACHC, BEST4, SNORD55, C1orf228, TCTEX1D4, IPP, TEX38, NSUN4, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, GPBP1L1, RPS8, ATPAF1, ST3GAL3, SLC6A9, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, TMEM53, NA NA NA NA NA NA NA NA NA LTS-029 HECTD3, RAD54L, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, EFCAB14) 0.3918197505544 107 0.0691760804072576 1.66173084120967 4269 0.387521646627675 10 6 4 -6.78829621431851 LTS-029 NA NA NA NA LTS-029 chr1 47184570 47395184 210615 * c(CYP4A11, CYP4B1, CYP4Z2P, EFCAB14) 0 1 NA 1.67879097025937 117 0.555244383072613 9 9 0 -5.76507310830463 LTS-029 chr1 47395185 48763457 1368273 * c(LINC00853, PDZK1IP1, CYP4A11, CYP4Z1, SLC5A9, FOXE3, FOXD2, CYP4X1, CYP4A22, TRABD2B, SKINT1L, CMPK1, SPATA6, STIL, TAL1, FOXD2-AS1) 0.305942736612362 25 0.146017898446275 1.72241209831787 965 0.70123383934432 10 7 3 -6.73627476534996 LTS-029 chr1 48763458 48764419 962 * SPATA6 0.418 1 NA 1.83069728311991 19 0.27654400155368 10 10 0 -5.76441652185272 LTS-029 chr1 48764420 53493822 4729403 * c(MIR761, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, CC2D1B, EPS15, TTC39A, ZCCHC11, RNF11, C1orf185, GPX7, FAM159A, ZYG11A, NRDC, ORC1, TXNDC12, SPATA6, ECHDC2, RAB3B, SCP2, DMRTA2, COA7, BEND5, ZYG11B, AGBL4, PRPF38A, BTF3L4, ZFYVE9) 0.380292821180087 50 0.0940532306945468 1.66927228968814 3304 0.535800516130331 10 6 4 -6.78874873056692 LTS-029 chr1 53493823 53493827 5 * SCP2 NA 0 NA 1.617 1 NA NA NA NA NA LTS-029 chr1 53493828 53504607 10780 * SCP2 NA 0 NA 0.464 1 NA NA NA NA NA LTS-029 chr1 53504608 53514728 10121 * SCP2 0.315 1 NA 1.07521214326414 29 0.179662107597579 6 6 0 -5.76466963952845 LTS-029 chr1 53514729 72241986 18727258 * c(LINC01135, ZRANB2-AS1, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, ZRANB2-AS2, PATJ, HHLA3, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CTH, IL23R, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, TCTEX1D1, AK4, SLC35D1, USP24, ITGB3BP, SSBP3, PCSK9, NEGR1, NA NA NA NA NA NA NA NA NA LTS-029 PARS2, ACOT11, SERBP1, FOXD3, ANGPTL3, ALG6, FAM151A, IL12RB2, JAK1, JUN, MROH7, LDLRAD1, LEPR, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, NFIA, ROR1, MRPL37, HOOK1, PDE4B, HSPB11, PGM1, PIN1P1, YIPF1, L1TD1, LEPROT, C1orf123, TTC22, RAVER2, FGGY, PRKAA2, LRRC40, DEPDC1, NDC1, GNG12, PTGER3, LRRC7, CACHD1, MIER1, CYB5RL, RPE65, SCP2, DMRTB1, SLC1A7, TTC4, HSD52, C8A, C8B, USP1, LRP8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 BSND, DLEU2L, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, PLPP3, DIRAS3, SRSF11, ZRANB2, TMEM59, DNAJC6) 0.335977479662907 218 0.0962703829854878 1.0742338139014 10218 0.327616517005073 6 4 2 -6.89308454351645 LTS-029 NA NA NA NA LTS-029 chr1 72241987 72400748 158762 * c(NEGR1-IT1, NEGR1) NA 0 NA 1.181 1 NA NA NA NA NA LTS-029 chr1 72400749 77096259 4695511 * c(FPGT-TNNI3K, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, ST6GALNAC3, NEGR1, SNORD45B, SNORD45A, ACADM, LHX8, MSH4, TNNI3K, RABGGTB, SNORD45C, FPGT) 0.336886499248002 51 0.0967359940715947 1.17215435168791 1523 0.343436047223342 6 4 2 -6.80077181783637 LTS-029 chr1 77096260 89322926 12226667 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, MGC27382, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GNG5, GTF2B, LINC01140, CYR61, MIGA1, UOX, LINC01555, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, ADGRL4, LOC646626, TTLL7, RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, NA NA NA NA NA NA NA NA NA LTS-029 CLCA3P, CLCA2, HS2ST1) 0.334884854222809 117 0.0786983444139607 1.07929710513162 4884 1.1320264469571 6 4 2 -6.76058557425646 LTS-029 NA NA NA NA LTS-029 chr1 89322927 94334870 5011944 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.343758987083471 53 0.0959128512571932 0.995600635164428 3494 0.267584964794057 5 3 2 -7.02147307550632 LTS-029 chr1 94334871 95699797 1364927 * c(TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, ABCD3, LOC729970, ARHGAP29) 0.334603864345945 33 0.0848463517724298 1.08183848957172 1191 0.308491208112054 6 4 2 -6.7602277565872 LTS-029 chr1 95699798 107691489 11991692 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, OLFM3, LRRC39, COL11A1, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.420477778160823 36 0.131369513991448 0.757847732582474 2714 0.221099247866604 4 2 2 -6.90708462744913 LTS-029 chr1 107691490 107866890 175401 * NTNG1 NA 0 NA 1.629 1 NA NA NA NA NA LTS-029 chr1 107866891 109180942 1314052 * c(VAV3-AS1, VAV3, NBPF4, NTNG1, FAM102B, SLC25A24, NBPF6) 0.253267937535838 6 0.0613123152392731 1.3236066946447 616 0.450005182668216 8 6 2 -6.81486432262551 LTS-029 chr1 109180943 120612168 11431226 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, MAB21L3, ATXN7L2, C1orf194, HSD3BP4, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, CHIAP2, DENND2C, FNDC7, UBL4B, CELSR2, SPAG17, HIPK1, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, GNAI3, NA NA NA NA NA NA NA NA NA LTS-029 GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, PRPF38B, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, RBM15, DCLRE1B, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, ZNF697, SLC16A4, CD2, CD101, CD53, CD58, LRIG2) 0.339028871913994 301 0.0920460230832843 1.04886648195141 12098 0.393251191077994 6 4 2 -6.90664700914353 LTS-029 NA NA NA NA LTS-029 chr1 120612169 121313547 701379 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) NA 0 NA 0.990737914706673 103 0.234704599039311 5 NA NA -5.77762810381576 LTS-029 chr1 143912360 144013865 101506 * FAM72D 0.319 1 NA 0.976855791953758 6 0.418837756973588 5 5 0 -5.7646732643132 LTS-029 chr1 144013866 145075854 1061989 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.415576977379809 58 0.0786758533297014 1.02562009844542 530 0.399566505254289 6 3 3 -6.76360591183534 LTS-029 chr1 145075855 145076161 307 * c(NBPF20, PDE4DIP) 0.292 1 NA 1.07397002522946 7 0.206517034925174 6 6 0 -5.76441644894616 LTS-029 chr1 145076162 146316796 1240635 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, GPR89A, NA, NA, NA, POLR3GL, ITGA10, PEX11B, SEC22B, PDE4DIP, RBM8A) 0.288537823443057 34 0.0882926839506858 1.04992873256889 1453 0.392653138764329 7 5 2 -6.94207594733509 LTS-029 chr1 146316797 146317623 827 * c(NBPF10, NBPF20, NA, NA, NA) NA 0 NA 1.281 1 NA NA NA NA NA LTS-029 chr1 146317624 146509812 192189 * c(NBPF10, NBPF20, NBPF12, NA, NA, NA, LOC728989) 0.296219326415315 5 0.188616807310483 1.69111265457773 53 1.13163936627246 11 8 3 -6.7362050465092 LTS-029 chr1 146509813 146510112 300 * c(NA, NA, NA, LOC728989) 0.476 1 NA 1.98016103432269 15 0.620271929613671 11 11 0 -5.76441029524819 LTS-029 chr1 146510113 147381048 870936 * c(LINC00624, PDIA3P1, FMO5, GJA5, GJA8, ACP6, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.467262943812736 24 0.0271207712258346 1.41694630675742 670 0.361615671946302 8 4 4 -8.13688307787753 LTS-029 chr1 147381049 149676551 2295503 * c(FCGR1CP, MIR5087, NBPF14, GJA8, NBPF15, LINC01138, LOC388692, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) 0.245 1 NA 1.07973883061202 139 0.320688603929467 6 6 0 -5.77890776837385 LTS-029 chr1 149676552 151396727 1720176 * c(MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, VPS45, GABPB2, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LYSMD1, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, ZNF687, PRUNE1, RFX5, HIST2H3D, VPS72, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, NA NA NA NA NA NA NA NA NA LTS-029 HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.464082382330722 35 0.0252004735182936 1.32582298141806 4185 1.04395143392637 8 4 4 -8.14925079523463 LTS-029 NA NA NA NA LTS-029 chr1 151396728 152760544 1363817 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, POGZ, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.439366998588888 33 0.0866245599927607 1.41974451513224 1997 0.346840566211132 8 4 4 -6.76396201022977 LTS-029 chr1 152760545 152777462 16918 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.73175956965357 42 1.36254192255082 16 NA NA -5.76441128100554 LTS-029 chr1 152777463 157801910 5024448 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, ETV3, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, NA NA NA NA NA NA NA NA NA LTS-029 RUSC1-AS1, LAMTOR2, HDGF, S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, FCRL5, FCRL4, TMEM79, ADAM15, AQP10, SH2D2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PYGO2, NUP210L, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.435004014027714 145 0.104544958156107 1.37688903706239 11076 0.398527404141197 8 4 4 -6.79113991005204 LTS-029 NA NA NA NA LTS-029 chr1 157801911 157802975 1065 * CD5L NA 0 NA 1.669 1 NA NA NA NA NA LTS-029 chr1 157802976 158069787 266812 * c(KIRREL, CD5L) 0.471096898532153 8 0.0166968773812864 1.62343903499689 212 0.448550629542318 10 5 5 -9.87094598248437 LTS-029 chr1 158069788 158369268 299481 * c(OR10T2, LOC646268, CD1A, CD1B, CD1C, CD1D, CD1E) NA 0 NA 1.61183219936397 283 0.442823573689038 9 NA NA -5.76441034824119 LTS-029 chr1 158369269 158388971 19703 * character(0) NA 0 NA 0.974 1 NA NA NA NA NA LTS-029 chr1 158388972 158450314 61343 * c(OR10R2, OR10K2, OR10K1) 0.089 1 NA 0.913296799801772 73 0.710890287696739 5 5 0 -5.76452519050101 LTS-029 chr1 158450315 161565479 3115165 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, OR10R2, FCRL6, KCNJ9, KCNJ10, OR6Y1, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, NA NA NA NA NA NA NA NA NA LTS-029 PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.0760488675273331 132 0.0439678819962449 0.790721740750956 5490 0.380367264340148 4 4 0 -6.73522416907476 LTS-029 NA NA NA NA LTS-029 chr1 161565480 161565500 21 * FCGR2C NA 0 NA 0.635 1 NA NA NA NA NA LTS-029 chr1 161565501 161570686 5186 * FCGR2C 0.10566033565016 4 0.0844052723471704 0.445579965088369 38 0.526525896042554 3 3 0 -6.73788601062227 LTS-029 chr1 161570687 161570732 46 * FCGR2C 0.047 1 NA 3.763 1 NA NA NA NA NA LTS-029 chr1 161570733 172100999 10530267 * c(MIR921, MIR1295A, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-029 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.0760695320902484 141 0.032425711213794 0.79153948241492 6882 0.277495426174637 4 4 0 -6.74171975804535 LTS-029 NA NA NA NA LTS-029 chr1 172101000 172101990 991 * DNM3 NA 0 NA 0.682 1 NA NA NA NA NA LTS-029 chr1 172101991 176563711 4461721 * c(MIR3120, LOC100506023, GAS5-AS1, DNM3OS, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.0649400620319576 38 0.0358632319827753 0.759342491687503 2556 0.28297872040879 4 4 0 -6.85013575943995 LTS-029 chr1 176563712 178886959 2323248 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.0807054166077988 29 0.0248496463980551 0.856336016378943 1279 0.249031022875232 4 4 0 -6.90559962609191 LTS-029 chr1 178886960 178887023 64 * RALGPS2 0.078 1 NA 0.067 1 NA NA NA NA NA LTS-029 chr1 178887024 184801065 5914042 * c(GM140, MIR3121, LHX4-AS1, ARPC5, STX6, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, IER5, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, TOR3A, SOAT1, CACNA1E, NPHS2, EDEM3, NPL, C1orf21, SHCBP1L, ACBD6, RGS8, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.0683630786620195 106 0.0358950314030365 0.792069064167668 6028 0.281361963588317 4 4 0 -6.78173086461955 LTS-029 chr1 184801066 185119608 318543 * c(FAM129A, RNF2, TRMT1L) NA 0 NA 0.779687680698187 217 0.251774018398786 4 NA NA -5.7645368345409 LTS-029 chr1 185119609 185240474 120866 * c(SWT1, TRMT1L) 0.472 1 NA 1.3174238296437 105 0.31910895778243 7 7 0 -5.76495535220469 LTS-029 chr1 185240475 193090865 7850391 * c(GS1-279B7.1, MIR548F1, RNU6-72P, PRG4, IVNS1ABP, OCLM, BRINP3, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, TPR, HMCN1) 0.453041999215398 20 0.108751817891642 1.39418014416583 1891 0.338723531522428 8 4 4 -6.84274932088355 LTS-029 chr1 193090866 196195321 3104456 * c(MIR1278, KCNT2, CDC73, B3GALT2) NA 0 NA 1.415085403487 210 0.372551612728667 8 NA NA -5.77109463788858 LTS-029 chr1 196195322 196274352 79031 * KCNT2 0.236 1 NA 1.09386129034026 79 0.357141676216344 6 6 0 -5.76455804358975 LTS-029 chr1 196274353 211745926 15471574 * c(MIR181A1HG, MIR1231, ZBED6, MIR4260, PCAT6, MIR4735, MIR5191, TIMM17A, LRRN2, KDM5B, CFHR4, CFHR3, IL24, CHI3L1, CHIT1, SLC26A9, ATP6V1G3, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR1, CR1L, CR2, NEK7, CSRP1, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, DENND1B, EIF2D, ELF3, ELK4, F13B, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, SRGAP2, CRB1, ZNF281, PHLDA3, NR5A2, TMEM9, NA NA NA NA NA NA NA NA NA LTS-029 SLC41A1, SYT14, DSTYK, LMOD1, ASPM, OPTC, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, GPR25, UBE2T, IL19, CFH, CFHR1, CFHR2, HSD11B1, RD3, KCNT2, IL10, ZBTB41, IRF6, KCNH1, RPS10P7, KISS1, C1orf53, TMEM81, LAD1, LAMB3, NA, MIR181B1, MIR205, MIR181A1, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, PKP1, PLXNA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LAX1, KLHDC8A, ETNK2, AVPR1B, LINC00862, YOD1, PRELP, IPO9, HHAT, RCOR3, C1orf106, SERTAD4, LHX9, CAMK1G, SERTAD4-AS1, PTPN7, PTPRC, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, MIR205HG, NUCKS1, ASCL5, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, CACNA1S, BTG2, C1orf116, TRAF3IP3, CFHR5, NUAK2, DDX59, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PPFIA4, SLC45A3, RAB29, NAV1, IGFN1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, KIF14) 0.326288561563462 319 0.0969605751215191 1.08420900581105 15531 0.319154238740217 6 4 2 -6.84251946757299 LTS-029 NA NA NA NA LTS-029 chr1 211745927 212989968 1244042 * c(MIR3122, TATDN3, FAM71A, INTS7, NSL1, NENF, ATF3, NEK2, DTL, TMEM206, PPP2R5A, BATF3, SNORA16B, SLC30A1, LPGAT1) 0.312873874813289 32 0.133183231622768 1.00246393580201 1103 0.368983477791349 6 4 2 -6.84091255464385 LTS-029 chr1 212989969 213003464 13496 * TATDN3 NA 0 NA 1.462 1 NA NA NA NA NA LTS-029 chr1 213003465 213070458 66994 * c(SPATA45, FLVCR1, FLVCR1-AS1) 0.335018086975427 10 0.131176047949142 1.13199924412454 112 0.386894784150128 6 4 2 -6.7405942752691 LTS-029 chr1 213070459 213167674 97216 * c(FLVCR1, VASH2, ANGEL2) 0 1 NA 1.03084103655014 186 0.222239825387745 6 6 0 -5.77182482039015 LTS-029 chr1 213167675 215820974 2653300 * c(LINC00538, CENPF, RPS6KC1, KCNK2, KCTD3, PROX1, SMYD2, PTPN14, USH2A, ANGEL2) 0.222987417875822 15 0.197867006802429 1.11263487794372 1047 0.412579787890886 6 5 1 -6.73895985329475 LTS-029 chr1 215820975 215848062 27088 * USH2A 0.298 1 NA 1.1511377065191 45 0.71579881068198 6 6 0 -5.76444079473456 LTS-029 chr1 215848063 221053545 5205483 * c(LINC00210, BPNT1, LYPLAL1, SPATA17, EPRS, ESRRG, RAB3GAP2, RNU5F-1, HLX, MIR194-1, MIR215, MARK1, RRP15, MARC2, GPATCH2, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, SNORA36B, AURKAPS1, TGFB2, TGFB2-AS1, USH2A, C1orf115) 0.348358539305927 53 0.0551198193462254 1.14077956094079 2259 0.326408710651463 6 4 2 -6.74760719459987 LTS-029 chr1 221053546 221059104 5559 * HLX NA 0 NA 1.10410855975412 64 0.170338090949073 6 NA NA -5.76442310305014 LTS-029 chr1 221059105 222697088 1637984 * c(DUSP10, C1orf140, HHIPL2) 0.45 1 NA 1.42404777466519 89 0.646822128710815 8 8 0 -5.76501269473759 LTS-029 chr1 222697089 227182575 4485487 * c(MIR320B2, MIR4742, LEFTY1, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, FBXO28, LIN9, CNIH4, PYCR2, H3F3A, ITPKB, MIA3, STUM, CAPN8, LBR, FAM177B, H3F3AP4, NVL, SUSD4, ENAH, PSEN2, COQ8A, ACBD3, AIDA, SRP9, LEFTY2, TLR5, TP53BP2, HHIPL2, WDR26, CAPN2, MIXL1, CDC42BPA, DISP1, DEGS1, TAF1A, TMEM63A) 0.453300995715163 115 0.0711242914622216 1.33658610787734 4375 0.343537574049858 7 4 3 -6.96901440233531 LTS-029 chr1 227182576 227191829 9254 * CDC42BPA 0 1 NA 2.02775568196492 5 1.98719923510452 12 12 0 -5.76441232118478 LTS-029 chr1 227191830 228346458 1154629 * c(NA, MIR3620, MIR5008, SNAP47, MRPL55, GUK1, ZNF678, PRSS38, ARF1, ZNF847P, GJC2, JMJD4, WNT9A, C1orf35, CDC42BPA, WNT3A) 0.378637445291146 14 0.195285477141588 1.37652670472567 816 0.357146735917441 8 5 3 -6.74657254918095 LTS-029 chr1 228346459 228347352 894 * GJC2 0.44 1 NA 1.44256163942328 17 0.338700435922539 8 8 0 -5.76441017952829 LTS-029 chr1 228347353 234454755 6107403 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR4666A, MIR4671, MIR4427, SPHAR, CAPN9, CCSAP, C1orf131, HIST3H2BB, SLC35F3, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, KCNK1, TRIM67, TRIM17, EGLN1, MAP10, NUP133, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, NA NA NA NA NA NA NA NA NA LTS-029 HIST3H2A, URB2) 0.433236537862542 114 0.108518922158245 1.38498947288126 5025 0.347435783046218 8 4 4 -6.79909534141355 LTS-029 NA NA NA NA LTS-029 chr1 234454756 234455842 1087 * SLC35F3 NA 0 NA 1.136 1 NA NA NA NA NA LTS-029 chr1 234455843 236899015 2443173 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.439556380580538 76 0.109293247090793 1.29078089263551 2210 0.443856982972141 7 4 3 -6.77132970354023 LTS-029 chr1 236899016 236926873 27858 * ACTN2 0.465038467348496 7 0.0357484598402838 1.4704918047006 109 0.500118810722612 8 4 4 -7.54562230955093 LTS-029 chr1 236926874 236926964 91 * ACTN2 0 1 NA 2.67753772324139 3 2.87070275948823 15 15 0 -5.76441013945259 LTS-029 chr1 236926965 240072775 3145811 * c(LOC100130331, CHRM3, LINC01139, MTR, ZP4, RYR2, MT1HL1, ACTN2) 0.34436435087399 9 0.238753766695127 1.45150642204552 1057 0.421178167705962 8 5 3 -6.74626519587648 LTS-029 chr1 240072776 240073226 451 * character(0) 0.466 1 NA 1.89254369887644 11 0.426633182871741 11 11 0 -5.76441119198704 LTS-029 chr1 240073227 248113121 8039895 * c(AKT3, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, NLRP3, COX20, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, OR6F1, OR2W3, OR2T8, C1orf229, OR11L1, OR2L8, MAP1LC3C, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, RGS7, TFB2M, GREM2, RPS7P5, SMYD3, LINC01347, NA NA NA NA NA NA NA NA NA LTS-029 ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, EXO1, ZNF670, CEP170) 0.447089380995954 100 0.103875945825837 1.41580958617733 4411 0.422320755241212 8 4 4 -6.78507053179758 LTS-029 NA NA NA NA LTS-029 chr1 248113122 248128929 15808 * c(OR2L13, OR2AK2) 0.447 1 NA 1.6044382753194 15 1.36653139981 9 9 0 -5.76441026574944 LTS-029 chr1 248128930 249105163 976234 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR2T3, OR2T29, OR2M1P, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, LYPD8, SH3BP5L, OR2L5) 0.372252654776753 31 0.0848912397167409 1.57017907814827 608 1.17910486451761 8 5 3 -6.74048725986994 LTS-029 chr1 249105164 249214134 108971 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.31396790256994 277 0.269994129343929 7 NA NA -5.76497261993065 LTS-029 chr2 38824 38938 115 * FAM110C 0.384 1 NA 1.21158879554668 3 0.0881891905696686 7 7 0 -5.76443778899085 LTS-029 chr2 38939 18113394 18074456 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, TMEM18, C2orf50, PQLC3, LINC01105, FAM84A, DDX1, E2F6, CYS1, MYT1L, LPIN1, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, LOC400940, LINC00487, NA NA NA NA NA NA NA NA NA LTS-029 MYCN, ODC1, TRAPPC12, NBAS, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, RRM2, FAM110C, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, MYT1L-AS1, VSNL1, PXDN, COLEC11, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.324425911985365 130 0.110681205355034 1.07607751691858 6522 0.319205280265185 6 4 2 -6.90150784423553 LTS-029 NA NA NA NA LTS-029 chr2 18113395 18766386 652992 * c(NT5C1B-RDH14, KCNS3, RDH14, NT5C1B) 0.229965987615603 4 0.242153360497021 1.45902066393769 120 0.567012489055663 9 7 2 -6.74707947407744 LTS-029 chr2 18766387 20101229 1334843 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, LINC00954, NT5C1B) 0.466 1 NA 1.40963527411536 101 0.350404374322802 8 8 0 -5.76888070164133 LTS-029 chr2 20101230 25456604 5355375 * c(ADCY3, KLHL29, TTC32, GDF7, UBXN2A, DNMT3A, FKBP1B, EFR3B, PUM2, APOB, PFN4, FAM228B, RHOB, MFSD2B, PTRHD1, MATN3, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, WDR35, LDAH, SDC1, HS1BP3, LOC645949, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3, LAPTM4A) 0.44522882521806 68 0.0981361990527975 1.36361279342572 3479 0.334495676319582 8 4 4 -6.87062570388179 LTS-029 chr2 25456605 25456704 100 * DNMT3A NA 0 NA 0.883 1 NA NA NA NA NA LTS-029 chr2 25456705 26101403 644699 * c(MIR1301, DNMT3A, DTNB, ASXL2) 0.395943784834046 6 0.0279529366376176 0.983280432720798 486 0.225395577670302 5 3 2 -6.753860313587 LTS-029 chr2 26101404 26321500 220097 * c(RAB10, KIF3C) 0 1 NA 1.02688171777691 149 0.2742114668145 5 5 0 -5.77493317847511 LTS-029 chr2 26321501 26467583 146083 * c(RAB10, GAREM2, HADHA) 0.341 1 NA 1.03524478690458 311 0.257707350855158 6 6 0 -5.77182909071806 LTS-029 chr2 26467584 26477021 9438 * c(HADHA, HADHB) NA 0 NA 1.201 1 NA NA NA NA NA LTS-029 chr2 26477022 27534543 1057522 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, HADHB, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.333898316542745 26 0.109938780167034 1.11766170590072 2456 0.266963712421388 6 4 2 -6.7454254464057 LTS-029 chr2 27534544 29073145 1538602 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, KRTCAP3, SLC4A1AP, FOSL2, SPDYA, FTH1P3, IFT172, GCKR, GTF3C2, NRBP1, MPV17, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, CCDC121, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.334475617618413 49 0.0974997383565302 1.01510625460189 2580 0.247777089017159 6 4 2 -6.87944741724941 LTS-029 chr2 29073146 29073151 6 * c(SPDYA, TRMT61B) NA 0 NA 1.481 1 NA NA NA NA NA LTS-029 chr2 29073152 36778166 7705015 * c(LOC100271832, LOC100288911, MIR4765, MYADML, FAM179A, WDR43, ALK, SPDYA, LCLAT1, RASGRP3, FAM98A, SNORD53, LINC00486, EHD3, C2orf71, LTBP1, CAPN14, MEMO1, CRIM1, YPEL5, TRMT61B, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, SNORD92, MIR558, XDH, GALNT14, CLIP4, LBH, YIPF4, DPY30, CAPN13) 0.345306004250808 59 0.0920397755350245 1.08057071666399 3562 0.296304983678596 6 4 2 -6.78840767464631 LTS-029 chr2 36778167 40340013 3561847 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL, FEZ2) 0.347571218692702 40 0.0459536486093631 0.992855025345724 3076 0.237906601747898 6 4 2 -7.20992990293275 LTS-029 chr2 40340014 62739063 22399050 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LINC01119, MIR3682, MIR4432, MIR548AD, MIR5192, LRPPRC, CCT4, B3GNT2, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, OXER1, KCNG3, TMEM17, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, LOC339803, C2orf74, PRORSD1P, LOC388942, TMEM247, LINC01118, TSPYL6, LHCGR, NA NA NA NA NA NA NA NA NA LTS-029 C2orf91, LINC01121, EML6, LINC01122, LINC01185, MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, ASB3, DYNC2LI1, PEX13, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, VRK2, XPO1, CAMKMT, FBXO11, CALM2, FAM161A, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, ACYP2) 0.334780233366936 200 0.101839518546036 1.05718071756795 9473 0.564097312955663 6 4 2 -6.86682161042067 LTS-029 NA NA NA NA LTS-029 chr2 62739064 62900907 161844 * TMEM17 NA 0 NA 0.826 1 NA NA NA NA NA LTS-029 chr2 62900908 65659265 2758358 * c(LOC100132215, DBIL5P2, MIR4434, ACTR2, LINC00309, SPRED2, CEP68, EHBP1, LGALSL, LOC339807, LOC400958, MDH1, OTX1, WDPCP, VPS54, AFTPH, PELI1, RAB1A, SLC1A4, UGP2, SERTAD2) 0.414163396683566 16 0.0769074931329841 0.724747331512663 1532 0.183152756303973 4 2 2 -7.03407700099665 LTS-029 chr2 65659266 70187638 4528373 * c(SNORA36C, MIR3126, MIR4778, C1D, PROKR1, SNRNP27, WDR92, ASPRV1, GKN2, APLF, SPRED2, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, MXD1, MEIS1, PLEK, ETAA1, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, LOC644838, MEIS1-AS3, ANTXR1, ARHGAP25) 0.314151672302604 54 0.0770384590895734 1.03836548342344 2116 0.33548014858579 6 4 2 -6.98080616936575 LTS-029 chr2 70187639 70187714 76 * ASPRV1 NA 0 NA 0.813 1 NA NA NA NA NA LTS-029 chr2 70187715 70781005 593291 * c(LOC100133985, ASPRV1, PCBP1-AS1, PCBP1, PCYOX1, C2orf42, SNRPG, TGFA, TIA1, FAM136A) 0.313906530970991 10 0.11857585476535 0.93651051840956 663 0.532369698103831 4 3 1 -6.79846635841163 LTS-029 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.317 1 NA NA NA NA NA LTS-029 chr2 70781031 73513476 2732446 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.309093003466045 47 0.105462463345202 1.11520888683604 2654 0.356509713422023 6 4 2 -6.82070409438681 LTS-029 chr2 73513477 73518078 4602 * EGR4 NA 0 NA 0.87 1 NA NA NA NA NA LTS-029 chr2 73518079 75278496 1760418 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.340555778426255 43 0.0898343683230668 1.01663328555304 3087 0.258745342308921 6 4 2 -6.87314655823034 LTS-029 chr2 75278497 80846382 5567886 * c(SNAR-H, MIR4264, MIR5000, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, TACR1, GCFC2, LRRTM4, EVA1A, MRPL19) 0.345115867963752 11 0.0566353567691035 1.16417687734199 705 0.310584807709035 6 4 2 -6.79845225714636 LTS-029 chr2 80846383 87085504 6239122 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B) 0.349168857257236 40 0.0919055779395911 1.03770089278805 3147 0.232193826156302 6 4 2 -7.0788391606174 LTS-029 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.843 1 NA NA NA NA NA LTS-029 chr2 87092741 87400212 307472 * c(ANAPC1P1, LOC285074, RMND5A) 0.363724101023096 2 0.00919238815542513 0.621140344118845 71 0.316418026994103 3 2 1 -6.7355442268168 LTS-029 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.066 1 NA NA NA NA NA LTS-029 chr2 87404257 87424251 19995 * RMND5A NA 0 NA 0.524150571411056 54 0.337286854298325 2 NA NA -5.76661192172516 LTS-029 chr2 87424252 91925073 4500822 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.339315892366051 24 0.0557821201419974 1.13321506447178 944 0.697963986118681 6 4 2 -6.75507394013214 LTS-029 chr2 91925074 91925139 66 * character(0) 0.385 1 NA 4.533 1 NA NA NA NA NA LTS-029 chr2 91925140 91944151 19012 * character(0) 0.380543755371015 16 0.0929307986263614 1.52655422942469 70 0.730948288609473 8 5 3 -6.73313705977165 LTS-029 chr2 91944152 91955470 11319 * character(0) NA 0 NA 1.7358326206887 7 0.293603392999727 10 NA NA -5.76445590288013 LTS-029 chr2 95537183 95824624 287442 * c(TEKT4, MAL, LOC442028, MRPS5, ZNF514) 0.391 1 NA 1.07048908853181 211 0.25996704068648 6 6 0 -5.76881144551668 LTS-029 chr2 95824625 96619774 795150 * c(TRIM43, PROM2, KCNIP3, FAHD2A, TRIM43B, ZNF2, ZNF514) 0.418710162829565 33 0.0879097548625862 1.08186180104932 623 0.281438762313378 6 3 3 -6.73904004850622 LTS-029 chr2 96619775 96657360 37586 * character(0) 0.323 1 NA 0.880913712757217 19 0.163604268664195 5 5 0 -5.76925318640925 LTS-029 chr2 96657361 122525421 25868061 * c(RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, FBLN7, C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, DBI, NA NA NA NA NA NA NA NA NA LTS-029 LONRF2, CCDC138, C1QL2, DUSP2, FOXD4L1, CFAP221, VWA3B, CREG2, ANKRD23, EN1, LINC00116, FHL2, SNRNP200, CLASP1, NCAPH, TMEM131, PSD4, NIFK-AS1, LYG2, UNC50, CNNM4, CNNM3, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, TFCP2L1, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 ASTL, LINC01191, SULT1C3, NPAS2, NPHP1, COA5, INSIG2, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, CCDC93, POU3F3, SEMA4C, STEAP3, ACOXL, CNOT11, TMEM127, KANSL3, IL36G, STARD7, DPP10, EPB41L5, ANKRD36B, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, PAX8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 IL1R2, MALL, PDCL3, C2orf49, TMEM185B, UXS1, SLC35F5, TSGA10, TMEM177, LMAN2L, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.332175379386273 298 0.0975442634394444 1.06083453788816 14873 0.324400776414794 6 4 2 -7.10807679598507 LTS-029 NA NA NA NA LTS-029 chr2 124771508 127834136 3062629 * c(CNTNAP5, BIN1, GYPC) 0.374412631483284 15 0.0350641588819016 1.87786874642494 331 0.568279921334579 11 7 4 -6.75747338478765 LTS-029 chr2 127834137 127839474 5338 * BIN1 0.314 1 NA 2.22816975447124 9 0.405520344742406 13 13 0 -5.76441852056177 LTS-029 chr2 127839475 127941993 102519 * c(BIN1, CYP27C1) 0.388880200925456 2 0.0466690475583121 1.98169703800951 23 0.496772010916516 13 8 5 -6.74442608482134 LTS-029 chr2 127941994 127942275 282 * CYP27C1 NA 0 NA 1.579 1 NA NA NA NA NA LTS-029 chr2 127942276 128059727 117452 * c(MAP3K2, ERCC3, CYP27C1) 0.147291135584617 7 0.16132929943796 1.6849751289087 240 0.678476934433205 9 8 1 -6.73428581418335 LTS-029 chr2 128059728 128060068 341 * MAP3K2 0.366 1 NA 2.04425431635867 10 0.445261171798206 12 12 0 -5.7644111448709 LTS-029 chr2 128060069 131829388 3769320 * c(RAB6C-AS1, CYP4F30P, FAR2P2, MIR4783, MAP3K2, TUBA3E, FAM168B, AMER3, PTPN18, GPR17, MED15P9, GPR148, LOC389033, FAR2P1, MYO7B, ARHGEF4, POLR2D, WDR33, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, POTEI, CFC1B, POTEJ, POTEF, SAP130, MZT2B, AMMECR1L, RAB6C, CCDC115, SFT2D3, CCDC74B, IMP4, HS6ST1) 0.399407820533869 86 0.0978162414932367 1.6783111467839 2861 0.502362966080516 10 6 4 -6.76359138516799 LTS-029 chr2 131829389 131877950 48562 * c(FAM168B, PLEKHB2) 0 1 NA 1.51394990416382 13 0.665627446426225 8 8 0 -5.76454449762463 LTS-029 chr2 131877951 131907278 29328 * PLEKHB2 NA 0 NA 1.72974201632063 98 0.25723487389787 10 NA NA -5.76461297275282 LTS-029 chr2 131907279 135988459 4081181 * c(CCNT2-AS1, MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, ACMSD, LOC150776, WTH3DI, RAB3GAP1, GPR39, C2orf27A, NCKAP5, LINC01120, NOC2LP2, C2orf27B, MGAT5, LOC440910, POTEE, PLEKHB2, ANKRD30BL, MZT2A, MAP3K19, TMEM163, ZRANB3, CCNT2, CCDC74A) 0.268088870918599 74 0.0775108512545127 1.44284339664306 1729 0.553545811160067 8 6 2 -6.73408059735904 LTS-029 chr2 135988460 136023096 34637 * ZRANB3 NA 0 NA 1.326 1 NA NA NA NA NA LTS-029 chr2 136023097 137852726 1829630 * c(LOC100507600, DARS, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, THSD7B, ZRANB3) 0.256682616551312 17 0.0643496880562849 1.28262155407257 778 0.393190135141236 8 6 2 -6.86508888214751 LTS-029 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.757 1 NA NA NA NA NA LTS-029 chr2 137872656 139316787 1444132 * c(HNMT, SPOPL, THSD7B) 0.255726467313069 5 0.0168908259123111 1.52260742217946 316 0.504488201157861 9 7 2 -7.044413087359 LTS-029 chr2 139316788 139330590 13803 * SPOPL 0.157142675390845 2 0.0629325035256027 2.06175986325608 102 0.85746445828608 8 7 1 -6.73444811887877 LTS-029 chr2 139330591 143676368 4345778 * c(NXPH2, SPOPL, LRP1B, YY1P2, KYNU) 0.258845361888372 18 0.0571580768713748 1.54625547779343 580 0.840046781440909 8 6 2 -6.7772601512878 LTS-029 chr2 143676369 165539648 21863280 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, NA NA NA NA NA NA NA NA NA LTS-029 IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.253236284649928 124 0.0750794893039094 1.37748991785773 7934 0.383347505000809 8 6 2 -6.97640619446872 LTS-029 NA NA NA NA LTS-029 chr2 165539649 165539740 92 * character(0) NA 0 NA 1.894 1 NA NA NA NA NA LTS-029 chr2 165539741 165542581 2841 * COBLL1 0.274147618248085 2 0.0120208152801713 2.09650039599395 61 0.638689588269555 19 14 5 -6.75127605299461 LTS-029 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.513 1 NA NA NA NA NA LTS-029 chr2 165544234 169626731 4082498 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, XIRP2, SLC38A11, COBLL1, CERS6, GALNT3, STK39, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, B3GALT1) 0.240008534441388 41 0.0853328418748551 1.41823651220345 2384 0.613812938889808 8 6 2 -6.81490671146726 LTS-029 chr2 169626732 169629998 3267 * c(CERS6-AS1, CERS6) 0.371 1 NA 0.997328342939163 68 0.185448540910206 5 5 0 -5.76454290481422 LTS-029 chr2 169629999 169630002 4 * c(CERS6-AS1, CERS6) NA 0 NA 1.173 1 NA NA NA NA NA LTS-029 chr2 169630003 179264161 9634159 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, CERS6-AS1, DHRS9, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, NOSTRIN, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, CERS6, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, NA NA NA NA NA NA NA NA NA LTS-029 SP5, HAGLR, LRP2, MIR10B, LINC01124, NFE2L2, PHOSPHO2, PDE11A, PDK1, ZAK, ATP5G3, SPC25, G6PC2, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, ABCB11, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.255273081751429 139 0.0740404012946753 1.34643451650313 7177 0.469417438795226 8 6 2 -6.8939766772562 LTS-029 NA NA NA NA LTS-029 chr2 179264162 179296161 32000 * c(MIR548N, PRKRA) NA 0 NA 0.862 1 NA NA NA NA NA LTS-029 chr2 179296162 179309291 13130 * c(MIR548N, PRKRA) NA 0 NA 0.951057373478313 39 0.187655968418622 5 NA NA -5.76441026600369 LTS-029 chr2 179309292 179310215 924 * c(MIR548N, PRKRA) NA 0 NA 1.428 1 NA NA NA NA NA LTS-029 chr2 179310216 183948321 4638106 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, DFNB59, PDE1A, FKBP7, DNAJC10, CWC22, PLEKHA3, SSFA2, TTN, PRKRA, SESTD1) 0.262117596422802 67 0.0759980628904028 1.38664535461858 5062 0.330392779850104 8 6 2 -6.78761988479364 LTS-029 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.56 1 NA NA NA NA NA LTS-029 chr2 183951766 189910657 5958892 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.26505963650379 49 0.0606298151885351 1.47494572668967 2139 0.651868592985394 8 6 2 -6.74230033888992 LTS-029 chr2 189910658 192214966 2304309 * c(NEMP2, MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, HIBCH, MSTN, GLS, SLC40A1, INPP1, MYO1B, NAB1, PMS1, ASNSD1, MFSD6, OSGEPL1, STAT1, STAT4, WDR75, C2orf88, ORMDL1) 0.232814605286549 33 0.0948416243646281 1.33727841405632 2065 0.352504835364783 8 6 2 -6.89832338706078 LTS-029 chr2 192214967 193060485 845519 * c(TMEFF2, MYO1B, NABP1, SDPR) NA 0 NA 1.37454233374629 473 0.330884462656494 8 NA NA -5.77662678851854 LTS-029 chr2 196544710 197171983 627274 * c(DNAH7, SLC39A10, HECW2, STK17B) 0.384 1 NA 0.978225942534566 701 0.206869341052204 5 5 0 -5.77176300718238 LTS-029 chr2 197171984 198948969 1776986 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, MARS2, GTF3C3) 0.338317731878951 16 0.0427094349451422 0.975955812484101 1562 0.207289189132376 6 4 2 -7.19076379793487 LTS-029 chr2 198948970 201277201 2328232 * c(TYW5, SATB2-AS1, C2orf69, SATB2, SPATS2L, FTCDNL1, PLCL1, C2orf47) 0.251002495633103 11 0.160095653225871 1.13091886417769 552 0.47253089010973 6 5 1 -6.78664192816735 LTS-029 chr2 201277202 201281012 3811 * SPATS2L NA 0 NA 0.52 1 NA NA NA NA NA LTS-029 chr2 201281013 203826688 2545676 * c(SNORD11B, LOC100507140, KIAA2012, CLK1, ICA1L, KCTD18, ALS2CR12, FAM117B, SGO2, ALS2CR11, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.310677379292633 49 0.089230268498568 1.0109552343646 3392 0.286947942907686 6 4 2 -7.0213560778394 LTS-029 chr2 203826689 208726027 4899339 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, MIR4775, ABI2, PARD3B, CPO, MDH1B, CREB1, CTLA4, METTL21A, CCNYL1, EEF1B2, LOC200726, FASTKD2, SNORD51, GPR1, ICOS, PLEKHM3, DYTN, NDUFS1, INO80D, CYP20A1, ZDBF2, SNORA41, RAPH1, NBEAL1, FZD5, CARF, KLF7, ADAM23, NRP2, CD28) 0.329283351161609 56 0.0936948001994539 1.08734816434392 3560 0.364940858155843 6 4 2 -6.77618295905296 LTS-029 chr2 208726028 210761220 2035193 * c(LOC100507443, IDH1-AS1, CRYGA, CRYGB, CRYGC, CRYGD, PIKFYVE, UNC80, IDH1, PLEKHM3, C2orf80, MAP2, PTH2R) 0.146348418119869 8 0.143429362903337 1.41930476813968 1085 0.514541037810265 8 7 1 -6.73801967067953 LTS-029 chr2 210761221 210769507 8287 * UNC80 NA 0 NA 1.057 1 NA NA NA NA NA LTS-029 chr2 210769508 214204998 3435491 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, LANCL1, CPS1, KANSL1L, ERBB4, IKZF2, UNC80, CPS1-IT1, ACADL, MYL1, RPE, SPAG16) 0.299414818766269 40 0.126380964060744 1.13378004606915 1456 0.443776865417185 6 4 2 -6.82919750979589 LTS-029 chr2 214204999 215590609 1385611 * c(VWC2L-IT1, VWC2L, SPAG16) 0.407 1 NA 1.22014974537715 192 0.378045680493958 7 7 0 -5.77836381458762 LTS-029 chr2 215590610 215854333 263724 * c(ABCA12, BARD1) 0.318773722833877 6 0.0628195829339864 1.14569801546647 315 0.583044707104229 7 5 2 -6.7638582912502 LTS-029 chr2 215854334 215855409 1076 * ABCA12 NA 0 NA 0.884 1 NA NA NA NA NA LTS-029 chr2 215855410 239358205 23502796 * c(LOC100129175, LOC100286922, MIR1471, MIR3131, MIR4268, MIR3132, UBE2F-SCLY, FARSB, ABCB6, MIR4439, MIR4777, MIR5702, MIR5703, ARPC2, ARL4C, RAMP1, SPEG, NMUR1, COPS8, SP140, CHRND, CHRNG, STK11IP, MOGAT1, AGAP1, COL4A3, COL4A4, COL6A3, DIS3L2, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, FBXO36, AAMP, UBE2F, CRYBA2, PKI55, LOC151174, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, NA NA NA NA NA NA NA NA NA LTS-029 MSL3P1, CYP27A1, DAW1, C2orf57, DES, TIGD1, EPHA4, ACSL3, FN1, OBSL1, DNPEP, SH3BP4, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, GIGYF2, TRAF3IP1, ABCA12, GBX2, CNPPD1, STK36, RUFY4, GMPPA, AGFG1, DNAJB2, HTR2B, ESPNL, SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, RBM44, KCNJ13, KLHL30, RESP18, C2orf82, ASB18, MIR153-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MIR26B, DNAJB3, NCL, ATIC, NEU2, NPPC, MIR375, SMARCAL1, PAX3, PRLH, PDE6D, SCLY, ASB1, CAB39, SERPINE2, PRKAG3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, FEV, PID1, ATG16L1, ANKZF1, USP40, HJURP, HES6, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, ACKR3, PSMD1, PTMA, MARCH4, WDFY1, NYAP2, USP37, PTPRN, CTDSP1, SNORD20, RPL37A, BCS1L, SAG, CCL20, TMBIM1, RAB17, RNF25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LOC643387, LINC00607, LOC646736, PRSS56, COPS7B, SLC4A3, MRPL44, SNORA75, LOC654841, SLC11A1, SP100, SPP2, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, SCG2, TRPM8, ATG9A, MLPH, FAM134A, GLB1L, CHPF, IQCA1, NHEJ1, FAM124B, TM4SF20, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ILKAP, ITM2C, RHBDD1, CUL3, PLCD4, DGKD, STK16, PER2, CDK5R2, CNOT9, LRRFIP1, TMEM169, DNER, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, TTLL4) 0.340787091584067 408 0.0853016124212151 1.06195567945349 18396 0.313758070165326 6 4 2 -7.07212000211832 LTS-029 NA NA NA NA LTS-029 chr2 239358206 242839372 3481167 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, HDAC4, FARP2 NA NA NA NA NA NA NA NA NA LTS-029 ) 0.334676511025134 160 0.0853594856157838 1.11217880950434 4218 0.533445174731448 6 4 2 -6.7516463940671 LTS-029 NA NA NA NA LTS-029 chr2 242839373 243037218 197846 * LOC728323 NA 0 NA 1.02905821594318 25 0.24430803643488 5 NA NA -5.77698260491398 LTS-029 chr3 239351 1369252 1129902 * c(CHL1, CNTN6) 0 1 NA 0.846326959359315 263 0.163418477494906 4 4 0 -5.90584242197127 LTS-029 chr3 1369253 4508681 3139429 * c(CNTN4-AS2, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.41145370840941 27 0.140101926673225 0.820663534457762 707 0.418230276623192 4 2 2 -6.75698078875296 LTS-029 chr3 4508682 4508742 61 * SUMF1 0.4 1 NA 0.33 1 NA NA NA NA NA LTS-029 chr3 4508743 5255126 746384 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.458418174246455 9 0.0224505629724018 0.723432083341261 643 0.167850889932537 4 2 2 -8.19333918154675 LTS-029 chr3 5255127 8817215 3562089 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.441834694268984 30 0.0942137701334504 0.858309929961199 596 0.251518040808118 4 2 2 -7.02337216741812 LTS-029 chr3 8817216 9055194 237979 * c(RAD18, SRGAP3) 0.355122205953663 16 0.185924312557557 0.7481338288988 327 0.558968874987188 3 2 1 -6.750452670036 LTS-029 chr3 9055195 9055420 226 * SRGAP3 NA 0 NA 0.497 1 NA NA NA NA NA LTS-029 chr3 9055421 9166577 111157 * SRGAP3 0.138277789120276 2 0.0742462120245875 0.463655299990952 95 0.128092174433787 2 2 0 -6.73601654637186 LTS-029 chr3 9166578 9290501 123924 * c(SRGAP3-AS3, SRGAP3) NA 0 NA 0.596 1 NA NA NA NA NA LTS-029 chr3 9290502 13678145 4387644 * c(MIR885, GHRLOS, MKRN2OS, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, TAMM41, IL17RE, CPNE9, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, RPUSD3, PRRT3, LINC00606, HRH1, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, GHRL, PPARG, SETD5, TMEM40, EMC3, BRK1, RAF1, RPL32, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A11, SYN2, TIMP4, VHL, BRPF1, CRELD1, HDAC11, TSEN2, NA NA NA NA NA NA NA NA NA LTS-029 JAGN1, LINC00852, IL17RC, CAMK1, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.433694388369283 105 0.108465472806828 0.758644475784737 4810 0.198289909972241 4 2 2 -6.81767875006467 LTS-029 NA NA NA NA LTS-029 chr3 13678146 13679062 917 * FBLN2 NA 0 NA 1.205 1 NA NA NA NA NA LTS-029 chr3 13679063 13860911 181849 * c(FBLN2, LINC00620, WNT7A) 0.35149353908897 7 0.0516817182376902 1.21241587605759 86 0.401403288306413 6 4 2 -6.7384065535049 LTS-029 chr3 13860912 13895960 35049 * WNT7A NA 0 NA 0.704 1 NA NA NA NA NA LTS-029 chr3 13895961 15062328 1166368 * c(FGD5P1, FGD5-AS1, CHCHD4, FGD5, LSM3, TPRXL, CCDC174, SLC6A6, NR2C2, WNT7A, XPC, TMEM43, GRIP2, C3orf20) 0.43189448634726 26 0.0956309895057358 0.805450358396635 1114 0.203090756440459 4 2 2 -6.75307507389036 LTS-029 chr3 15062329 28502605 13440277 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, BTD, MIR563, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, EOMES, NA NA NA NA NA NA NA NA NA LTS-029 EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.436669467084339 100 0.0960579260213084 0.738880892401786 4603 0.204358210708822 4 2 2 -7.37981105446747 LTS-029 NA NA NA NA LTS-029 chr3 28502606 28520304 17699 * ZCWPW2 NA 0 NA 0.91 1 NA NA NA NA NA LTS-029 chr3 28520305 33192692 4672388 * c(OSBPL10-AS1, CRTAP, CMTM7, OSBPL10, CCR4, TRIM71, ZCWPW2, CMTM8, STT3B, GPD1L, CNOT10, SUSD5, GLB1, RBMS3, GADL1, ZNF860, DYNC1LI1, CMTM6, TMPPE, LINC00693, TGFBR2) 0.420763662208209 32 0.139402512473309 0.778325750504891 1668 1.17416997551247 4 2 2 -6.73317044123532 LTS-029 chr3 33192693 33192866 174 * SUSD5 0 1 NA 1.02675493888665 5 1.42562014576114 5 5 0 -5.7644104402248 LTS-029 chr3 33192867 33877516 684650 * c(PDCD6IP, CLASP2, FBXL2, SUSD5, UBP1) 0.246507674264459 11 0.235668025370049 0.753721908538042 697 0.3122298782349 4 3 1 -6.75929093320134 LTS-029 chr3 33877517 33877626 110 * PDCD6IP 0.482 1 NA 0.914925752523832 3 0.0733689307541006 5 5 0 -5.76442764614714 LTS-029 chr3 33877627 43121662 9244036 * c(ACVR2B-AS1, PDCD6IP, KRBOX1, CCDC13-AS1, CTDSPL, EIF1B, ARPP21, SCN11A, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, ZNF662, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, NA NA NA NA NA NA NA NA NA LTS-029 STAC, FAM198A, VIPR1, POMGNT2, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.440801890704336 130 0.0869589571383829 0.780662098132326 6812 0.315559662738517 4 2 2 -6.76722880285373 LTS-029 NA NA NA NA LTS-029 chr3 43121663 46623760 3502098 * c(SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, LIMD1, CCRL2, ZNF502) 0.44384955671702 57 0.0723557029152568 0.734313378885176 3956 0.184689390866175 4 2 2 -7.05541568219946 LTS-029 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.91 1 NA NA NA NA NA LTS-029 chr3 46623907 47059256 435350 * c(NRADDP, LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.421108239902633 23 0.135903781936575 0.834415456742726 936 0.315006747036842 4 2 2 -6.74293689208304 LTS-029 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.653 1 NA NA NA NA NA LTS-029 chr3 47061216 48612471 1551256 * c(MIR1226, MIR4443, NME6, CSPG5, TREX1, COL7A1, DHX30, SCAP, KLHL18, PTPN23, FBXW12, KIF9-AS1, SETD2, MAP4, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, KIF9, SPINK8, SMARCC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.460787866137843 37 0.0391706821786696 0.756155231160227 2813 0.172642219979762 4 2 2 -7.35272801273907 LTS-029 chr3 48612472 48615907 3436 * COL7A1 0 1 NA 0.72018792571299 41 0.15628418065163 4 4 0 -5.76503218120746 LTS-029 chr3 48615908 49017113 401206 * c(MIR711, MIR4793, ARIH2, COL7A1, CELSR3, TMEM89, IP6K2, NCKIPSD, PRKAR2A, ARIH2OS, SLC26A6, UQCRC1, SLC25A20) 0.378709012869754 13 0.169568494594292 0.759091337327879 1269 0.219047976909196 4 2 2 -6.774717385071 LTS-029 chr3 49017114 49055788 38675 * c(ARIH2, WDR6, P4HTM, DALRD3) 0.189055612910783 3 0.188244521832642 1.101045155536 297 0.446007969578021 6 5 1 -6.736552180494 LTS-029 chr3 49055789 49064110 8322 * c(NDUFAF3, IMPDH2, MIR191, MIR425, DALRD3) 0.452 1 NA 1.00711615739173 97 0.146986233926574 5 5 0 -5.7651884290864 LTS-029 chr3 49064111 49066973 2863 * IMPDH2 NA 0 NA 1.00671484862371 37 0.155024399900676 5 NA NA -5.76464751521038 LTS-029 chr3 49066974 49067090 117 * character(0) NA 0 NA 0.721 1 NA NA NA NA NA LTS-029 chr3 49067091 56469148 7402058 * c(SNORD19B, LINC00696, BSN-AS2, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, TRAIP, NPRL2, USP19, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, KLHDC8B, ALAS1, LAMB2P1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, GPX1, SPCS1, NA NA NA NA NA NA NA NA NA LTS-029 GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, MST1, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, QRICH1, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, C3orf84, CCDC71, NT5DC2, NEK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, ESRG, WDR82, BAP1, HYAL3, NICN1, MON1A, ABHD14B, HYAL2, BSN, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1) 0.459349500788212 153 0.032961568504548 0.769863992411519 10854 0.174225181189909 4 2 2 -7.52332729689719 LTS-029 NA NA NA NA LTS-029 chr3 56469149 56667682 198534 * c(FAM208A, ERC2, CCDC66) 0.451522913523115 12 0.0594349657315889 0.66062408380432 224 0.151939676446501 4 2 2 -7.04187742732842 LTS-029 chr3 56667683 56695060 27378 * FAM208A 0.235 1 NA 0.669489152798089 60 0.103627607679838 3 3 0 -5.77372722227101 LTS-029 chr3 56695061 56763001 67941 * c(FAM208A, ARHGEF3) 0.466 1 NA 0.626894672494758 87 0.19045944815105 3 3 0 -5.76458207099465 LTS-029 chr3 56763002 56763007 6 * ARHGEF3 NA 0 NA 0.737 1 NA NA NA NA NA LTS-029 chr3 56763008 58899403 2136396 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.414235583035083 63 0.147515368427059 0.751066681506018 2693 0.19026925774892 4 2 2 -6.80151276909228 LTS-029 chr3 58899404 58899422 19 * C3orf67 NA 0 NA 0.83 1 NA NA NA NA NA LTS-029 chr3 58899423 64184707 5285285 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, C3orf14, PTPRG, ATXN7, THOC7, CADPS, PSMD6) 0.433602358933274 33 0.114829501409435 0.836116385046331 1414 0.427129027115527 4 2 2 -6.80993574916887 LTS-029 chr3 64184708 64430093 245386 * c(PRICKLE2-AS3, PRICKLE2) NA 0 NA 1.427 1 NA NA NA NA NA LTS-029 chr3 64430094 66433676 2003583 * c(ADAMTS9-AS2, MAGI1-AS1, SLC25A26, LRIG1, ADAMTS9, MIR548A2, MAGI1) 0.377284229079218 15 0.0396374041723699 1.12643321424272 609 0.251313907655458 6 4 2 -7.01201534204927 LTS-029 chr3 66433677 68593852 2160176 * c(MIR4272, SLC25A26, LRIG1, FAM19A1, KBTBD8, SUCLG2) 0.32 1 NA 1.09396078071353 351 0.324985632367681 6 6 0 -5.76924445441368 LTS-029 chr3 68593853 74570331 5976479 * c(MIR1284, MIR3136, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, UBA3) 0.313002546719086 27 0.137718477036957 1.06628677031273 2104 0.322308318442347 6 4 2 -6.84589632434811 LTS-029 chr3 75263493 75790607 527115 * c(ZNF717, MIR1324, FAM86DP) 0.320867357086015 190 0.101884026790589 1.61387215221191 348 1.18016718508063 10 7 3 -6.73841431396851 LTS-029 chr3 75790608 75790614 7 * ZNF717 NA 0 NA 1.023 1 NA NA NA NA NA LTS-029 chr3 75790615 89530956 13740342 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.349288971197867 55 0.102969071228353 1.12973087306345 1651 0.351283054068605 6 4 2 -6.7431607703455 LTS-029 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.18103802195152 29 0.290851671099344 6 NA NA -5.78154448165221 LTS-029 chr3 93591838 93593119 1282 * PROS1 0.321 1 NA 1.05899389272699 25 0.675880198950475 6 6 0 -5.76441474411111 LTS-029 chr3 93593120 111602828 18009709 * c(ZBTB11-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, LOC152225, ARL13B, DHFR2, GABRR3, ALCAM, MYH15, LINC00879, PLCXD2, ABI3BP, NECTIN3, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, LINC00636, EPHA6, PDCL3P4, DUBR, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, TRAT1, NA NA NA NA NA NA NA NA NA LTS-029 IMPG2, TRMT10C, TMEM45A, IFT57, DPPA4, TBC1D23, PROS1, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NSUN3, NFKBIZ, TMEM30CP, LINC00488, MIR548A3, OR5H6, OR5H2, ZBED2, CEP97, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, PHLDB2, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.319458150036655 120 0.107286207184805 1.06603338300386 6100 0.410202443782266 6 4 2 -6.91163463896951 LTS-029 NA NA NA NA LTS-029 chr3 111602829 111602840 12 * PHLDB2 NA 0 NA 1.892 1 NA NA NA NA NA LTS-029 chr3 111602841 112263012 660172 * c(BTLA, GCSAM, SLC9C1, TAGLN3, TMPRSS7, CD200, ABHD10, ATG3, MIR567, C3orf52, PHLDB2) 0.26376208335323 58 0.0908592577489674 1.32807915109108 1030 0.551216322709336 8 6 2 -6.74665603822465 LTS-029 chr3 112263013 112267370 4358 * ATG3 NA 0 NA 1.087 1 NA NA NA NA NA LTS-029 chr3 112267371 113623104 1355734 * c(MIR4446, CFAP44-AS1, CD200R1, CCDC80, SPICE1, USF3, NEPRO, GTPBP8, CD200R1L, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, CFAP44, ATG3, NAA50, BOC) 0.337620542434176 39 0.0928274050348606 1.05233380643047 1742 0.292653696066962 6 4 2 -6.77567064104943 LTS-029 chr3 113623105 113627780 4676 * GRAMD1C NA 0 NA 1.238 1 NA NA NA NA NA LTS-029 chr3 113627781 113699611 71831 * c(ZDHHC23, GRAMD1C, CCDC191) 0.275767944525534 7 0.0256059888828115 1.38761027063352 228 0.502954603881096 8 6 2 -6.75213797243601 LTS-029 chr3 113699612 113720416 20805 * CCDC191 NA 0 NA 1.01 1 NA NA NA NA NA LTS-029 chr3 113720417 119138002 5417586 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, IGSF11, C3orf30, DRD3, TIGIT, GAP43, ZBTB20, TUSC7, LSAMP, ARHGAP31, CCDC191, MIR568, UPK1B, ZNF80, QTRT2, B4GALT4) 0.317951434350157 31 0.108360946026029 1.04657859544865 1154 0.404873912301331 6 4 2 -6.86458064604263 LTS-029 chr3 119138003 119149944 11942 * c(TMEM39A, ARHGAP31) 0.37 1 NA 0.948943749511526 67 0.127455800197835 5 5 0 -5.76441107293704 LTS-029 chr3 119149945 122606067 3456123 * c(LOC100129550, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, PARP15, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, POPDC2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.35481938170219 92 0.0786842255973809 1.05157959877389 4250 0.347907806623534 6 4 2 -6.79534816031932 LTS-029 chr3 122606068 124463657 1857590 * c(LOC100129550, MYLK-AS1, MIR5002, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, ROPN1, CCDC14, UMPS, KALRN) 0.339807050716633 49 0.0675493646651593 1.11466054708973 1794 0.303519461185285 6 4 2 -6.74589290521831 LTS-029 chr3 124463658 124480871 17214 * UMPS NA 0 NA 1.07937677515934 13 0.26361014337902 6 NA NA -5.76457470630615 LTS-029 chr3 124480872 124480874 3 * character(0) NA 0 NA 1.408 1 NA NA NA NA NA LTS-029 chr3 124480875 124481461 587 * character(0) 0.23 1 NA 1.70572533958913 11 0.734912165438218 10 10 0 -5.76441126126451 LTS-029 chr3 124481462 125725987 1244526 * c(FAM86JP, MIR548I1, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, SLC41A3, MUC13, HEG1, ZNF148, SLC12A8, SNX4) 0.221026418442222 33 0.0406443135908669 1.58649136954352 1041 0.441240070774706 10 8 2 -6.78253327259186 LTS-029 chr3 125725988 127340077 1614090 * c(ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, TXNRD3, TPRA1, UROC1, C3orf22, CHST13, NUP210P1, KLF15, CFAP100, MCM2, PLXNA1, SLC41A3, TXNRD3NB, ZXDC, CHCHD6) 0.187793467192011 12 0.0921452657492505 1.85537520141405 1315 0.431723561731431 11 9 2 -6.75859909846446 LTS-029 chr3 127340078 127340479 402 * MCM2 NA 0 NA 1.126 1 NA NA NA NA NA LTS-029 chr3 127340480 130103631 2763152 * c(TMCC1-AS1, ISY1-RAB43, MGLL, RPL32P3, H1FOO, DNAJB8, KBTBD12, COPG1, TMCC1, PLXND1, LINC01565, COL6A5, GATA2, GP9, DNAJB8-AS1, ACAD9, SEC61A1, RAB43, H1FX-AS1, MCM2, PODXL2, IFT122, HMCES, ISY1, KIAA1257, RHO, EEFSEC, RPN1, ALG1L2, COL6A4P2, LOC653712, SNORA7B, TRH, FAM86HP, CNBP, RAB7A, EFCC1, ABTB1, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.230416642048761 40 0.0295601949960606 1.64998778799409 2577 0.384491438395032 9 7 2 -6.85375899238536 LTS-029 chr3 130103632 130103730 99 * COL6A5 NA 0 NA 1.689 1 NA NA NA NA NA LTS-029 chr3 130103731 130290230 186500 * c(COL6A6, COL6A5) 0 3 0 2.0686123555781 339 0.909182224268529 0 0 0 -Inf LTS-029 chr3 130290231 130361856 71626 * COL6A6 0.357 1 NA 2.00509702417279 115 0.393982246073608 11 11 0 -5.76467743474235 LTS-029 chr3 130361857 136731054 6369198 * c(NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, EPHB1, DNAJC13, ANAPC13, NPHP3, ATP2C1, ASTE1, PIK3R4, KY, LOC339874, NPHP3-AS1, NCK1, PCCB, AMOTL2, ACKR4, RAB6B, IL20RB, ACPP, MSL2, PPP2R3A, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, SNORA58, TF, NEK11, UBA5, C3orf36, CEP63, SLC35G2, ACAD11, BFSP2) 0.328625064207648 95 0.0710448259990255 2.00796372180617 3949 0.510241538790515 12 8 4 -6.78836509529701 LTS-029 chr3 136731055 141011208 4280154 * c(PISRT1, DZIP1L, MRAS, ARMC8, TRIM42, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, A4GNT, DBR1, CLDN18, PIK3CB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, ESYT3, SOX14, SPSB4, PXYLP1, COPB2) 0.386317155729562 36 0.103382887503549 1.73045665504313 2345 0.477389457507188 10 6 4 -6.74651715152118 LTS-029 chr3 141011209 141644332 633124 * c(GRK7, ZBTB38, ATP1B3, RASA2, PXYLP1, RNF7) 0.127481307542923 5 0.21575263613685 1.59245435942599 593 0.552394028498207 9 8 1 -6.73552381780992 LTS-029 chr3 141644333 141644774 442 * ATP1B3 0.469 1 NA 1.74732365866733 9 0.727034215150841 10 10 0 -5.76441028805541 LTS-029 chr3 141644775 142084210 439436 * c(GK5, ATP1B3, XRN1, TFDP2) 0.429439116058613 5 0.0454290655858119 1.58263639243367 420 0.457222580697637 8 4 4 -6.76651198553605 LTS-029 chr3 142084211 142089307 5097 * XRN1 NA 0 NA 1.348 1 NA NA NA NA NA LTS-029 chr3 142089308 145794707 3705400 * c(LOC100289361, LOC100507389, SLC9A9-AS1, C3orf58, U2SURP, PCOLCE2, SLC9A9, PAQR9, PLOD2, PLS1, XRN1, ATR, TRPC1, CHST2) 0.453487675989986 20 0.107739012139717 1.34081753689769 1457 0.41392295968685 7 4 3 -6.84719615803066 LTS-029 chr3 145794708 145795654 947 * PLOD2 NA 0 NA 2.955 1 NA NA NA NA NA LTS-029 chr3 145795655 147114143 1318489 * c(PLSCR5, PLOD2, PLSCR1, PLSCR2, PLSCR4, ZIC4) 0.369847098811186 10 0.139511090757848 1.79420447152328 380 0.472722595406679 10 6 4 -6.75417785434598 LTS-029 chr3 147114144 149688939 2574796 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, CP, CPA3, CPB1, AGTR1, WWTR1, GYG1, ANKUB1, TM4SF1, COMMD2, PFN2, HLTF, TM4SF4, ZIC1, ZIC4, HPS3) 0.445924695051304 19 0.108607776530076 1.34163255269877 1431 0.339887105717582 7 4 3 -6.81903464603401 LTS-029 chr3 149688940 149699882 10943 * LOC646903 NA 0 NA 1.79 1 NA NA NA NA NA LTS-029 chr3 149699883 150420034 720152 * c(ERICH6, SERP1, SELENOT, EIF2A, TSC22D2) 0.436336825165797 10 0.0308552174590367 1.58355838771883 391 0.347614397725694 8 4 4 -6.91686949992659 LTS-029 chr3 150420035 150420539 505 * ERICH6 NA 0 NA 1.011 1 NA NA NA NA NA LTS-029 chr3 150420540 152017799 1597260 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, ERICH6, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY13, GPR87, SUCNR1, SIAH2, P2RY12, CLRN1, P2RY14) 0.387086536821091 19 0.198824116343481 1.33391837204377 1067 0.462982640259527 7 4 3 -6.7496188082143 LTS-029 chr3 152017800 152017925 126 * MBNL1 NA 0 NA 1.762 1 NA NA NA NA NA LTS-029 chr3 152017926 154862169 2844244 * c(ARHGEF26-AS1, C3orf79, DHX36, ARHGEF26, GPR149, MBNL1, MME, P2RY1, RAP2B, TMEM14EP) 0.433652476509914 12 0.0241278162118231 1.69529690385937 726 0.354302224925094 10 5 5 -6.93822274844711 LTS-029 chr3 154862170 154900690 38521 * MME 0.398 1 NA 1.74439927911994 93 0.36546047087712 10 10 0 -5.76447379665381 LTS-029 chr3 154900691 156009925 1109235 * c(LOC100507537, KCNAB1-AS2, PLCH1, C3orf33, MME, KCNAB1, GMPS, SLC33A1) 0.20228657347144 9 0.199895875673089 1.64925076132877 543 0.546566482374334 10 8 2 -6.75079198283188 LTS-029 chr3 156009926 156175167 165242 * c(KCNAB1-AS1, KCNAB1) 0.463 1 NA 1.69261495419735 15 0.525632381042112 9 9 0 -5.76525133415634 LTS-029 chr3 156175168 156175362 195 * KCNAB1 NA 0 NA 1.61475180979537 7 0.0367442901297991 9 NA NA -5.76441028645043 LTS-029 chr3 156175363 156177500 2138 * KCNAB1 NA 0 NA 1.434 1 NA NA NA NA NA LTS-029 chr3 156177501 160953057 4775557 * c(TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, SMC4, PPM1L, PQLC2L, TIPARP, TRIM59, SCHIP1, LINC00880, IL12A, KPNA4, LEKR1, C3orf80, MIR15B, MIR16-2, MLF1, NMD3, RSRC1, LXN, CCNL1, IFT80, PTX3, RARRES1, PA2G4P4, SHOX2, MFSD1, IQCJ, SSR3, SCARNA7, LINC00886, KCNAB1, VEPH1, ARL14, GFM1, B3GALNT1) 0.432554166357713 76 0.109408876608353 1.35640613092853 2745 0.513191101935413 8 4 4 -6.78553536906665 LTS-029 chr3 160953058 160955783 2726 * NMD3 NA 0 NA 2.285 1 NA NA NA NA NA LTS-029 chr3 160955784 168547037 7591254 * c(LOC101243545, PDCD10, OTOL1, WDR49, SPTSSB, SLITRK3, GOLIM4, NMD3, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, MIR551B, ZBBX, EGFEM1P) 0.421597065437742 26 0.127374414771812 1.49061291524166 1131 0.548425616737695 8 4 4 -6.74637706562964 LTS-029 chr3 168547038 168801274 254237 * EGFEM1P NA 0 NA 2.469 1 NA NA NA NA NA LTS-029 chr3 168801275 169099322 298048 * MECOM NA 0 NA 3.09327389834671 161 0.56696112497774 18 NA NA -5.76441533352294 LTS-029 chr3 169099323 169283781 184459 * MECOM NA 0 NA 1.289 1 NA NA NA NA NA LTS-029 chr3 169283782 169587741 303960 * c(LRRC34, MECOM, LRRIQ4, MYNN, TERC, LRRC31, ACTRT3) 0.491 1 NA 1.89944487964361 273 0.384978923790058 11 11 0 -5.76506430969045 LTS-029 chr3 169587742 169715162 127421 * c(LOC100128164, SAMD7, SEC62) 0 1 NA 1.96883576453019 193 0.696236261891483 11 11 0 -5.76443606588235 LTS-029 chr3 169715163 170611261 896099 * c(RPL22L1, GPR160, CLDN11, PRKCI, EIF5A2, SLC7A14, SKIL, SEC62, PHC3) 0.274428446067921 4 0.185814423552102 1.91925115902769 830 0.505541625555589 11 8 3 -6.7361174718544 LTS-029 chr3 170611262 172766829 2155568 * c(ECT2, TNIK, GHSR, TMEM212, PLD1, EIF5A2, NCEH1, FNDC3B, SLC2A2, MIR569, SPATA16, TNFSF10) 0.236817155180114 25 0.0372944142377023 1.5969553943948 1253 0.416605589963659 9 7 2 -6.75279534884425 LTS-029 chr3 172766830 175522840 2756011 * c(MIR4789, NAALADL2-AS3, NLGN1, NAALADL2, SPATA16) 0.214359529280267 5 0.0408044115262063 1.91137481692965 351 0.508221671917155 10 8 2 -6.78136300401977 LTS-029 chr3 175522841 189586435 14063595 * c(MIR944, LOC100131635, MIR1224, LINC00578, LINC00888, ABCC5, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, LINC01014, ALG3, KCNMB2, IGF2BP2, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, RTP1, CRYGS, TTC14, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, MCF2L2, ATP11B, VPS8, LOC253573, NAALADL2, FETUB, LAMP3, KCNMB3, HTR3E, C3orf70, TPRG1, HRG, CCDC39, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, NA NA NA NA NA NA NA NA NA LTS-029 SOX2-OT, KNG1, FLJ46066, FLJ42393, LPP, NDUFB5, ZNF639, PEX5L, DNAJB11, PIK3CA, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, MASP1, MCCC1, PSMD2, MRPL47, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, ST6GAL1, SOX2, SST, SNORA81, SNORD66, THPO, TBL1XR1, MAP6D1, FXR1, B3GNT5, ACTL6A, TP63, CHRD, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 ADIPOQ, CAMK2N2, ECE2) 0.208510033414514 163 0.0726971641765709 1.6684396251137 9304 0.533909337622162 10 8 2 -6.86803049824232 LTS-029 NA NA NA NA LTS-029 chr3 189586436 189586439 4 * TP63 NA 0 NA 1.94 1 NA NA NA NA NA LTS-029 chr3 189586440 192126626 2540187 * c(SNAR-I, CLDN16, TMEM207, CCDC50, PYDC2, FGF12, UTS2B, OSTN, IL1RAP, P3H2, GMNC, TP63, CLDN1) 0.206331425011903 45 0.0437942503490625 1.8177548610493 1133 0.937085917140888 11 9 2 -6.74652907346176 LTS-029 chr3 192126627 193036794 910168 * c(MB21D2, FGF12, ATP13A5, HRASLS, MGC2889) 0.265 1 NA 1.07338125717708 179 0.321239143349446 6 6 0 -5.77238550488635 LTS-029 chr3 193036795 193042776 5982 * ATP13A5 0.352 1 NA 1.11813920119292 15 0.199327392808438 6 6 0 -5.76441049783735 LTS-029 chr3 193042777 195306436 2263660 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, ATP13A5, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.32020535247541 34 0.0815840554919706 1.04718192100902 1609 0.334639410622888 6 4 2 -6.85905377126212 LTS-029 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.535 1 NA NA NA NA NA LTS-029 chr3 195345046 195476016 130971 * c(MUC20, MUC4, MIR570, SDHAP2) 0.354047843264976 25 0.100052686120863 1.48237395437872 199 1.44911067152863 6 4 2 -6.73717767629507 LTS-029 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.032 1 NA NA NA NA NA LTS-029 chr3 195477782 195710989 233208 * c(TNK2, SDHAP1, MUC4) 0.340940142251144 23 0.0524539700340405 1.10968468080538 391 0.336590213622373 6 4 2 -6.74976459172867 LTS-029 chr3 195710990 196388706 677717 * c(TM4SF19-TCTEX1D2, TM4SF19, ZDHHC19, RNF168, SLC51A, FBXO45, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, PCYT1A, TFRC) 0.380983984893055 27 0.0585144684667221 0.996374202183623 1091 0.239834696195466 5 3 2 -6.81087269165172 LTS-029 chr3 196388707 196433181 44475 * c(NRROS, CEP19) NA 0 NA 1.372 1 NA NA NA NA NA LTS-029 chr3 196433182 196509511 76330 * c(PAK2, PIGX, CEP19) NA 0 NA 1.62619561089743 124 0.372046653656126 9 NA NA -5.7644334188581 LTS-029 chr3 196509512 197557635 1048124 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, NCBP2-AS2, DLG1, SENP5, LOC220729, NCBP2, MELTF, PAK2, BDH1, PIGZ, FYTTD1, LRCH3, RUBCN) 0.317972169735634 25 0.0732191231851352 1.00907866613296 1167 0.252616288829734 6 4 2 -6.94180044939708 LTS-029 chr3 197557636 197770512 212877 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.02691462693356 401 0.242872346605446 5 NA NA -5.77738946620019 LTS-029 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.349 1 NA 0.975202760384386 13 0.397340856709018 5 5 0 -5.76442822081437 LTS-029 chr4 60304 481678 421375 * c(ZNF595, ZNF721, ZNF718, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.334854652036595 5 0.0687146272637784 1.39129607146159 346 0.427221919676519 9 6 3 -6.77466529711468 LTS-029 chr4 481679 492998 11320 * c(ZNF721, PIGG) NA 0 NA 2.013 1 NA NA NA NA NA LTS-029 chr4 492999 1215585 722587 * c(LOC100129917, LOC100130872, TMED11P, PCGF3, SPON2, CPLX1, SLC26A1, CTBP1, DGKQ, GAK, RNF212, IDUA, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, MFSD7, TMEM175) 0.221127637424572 32 0.0574391332826155 1.70553482679169 1376 0.46025493428802 10 8 2 -6.73660321069223 LTS-029 chr4 1215586 1333954 118369 * c(MAEA, CTBP1, CTBP1-AS2) NA 0 NA 1.62551338303658 211 0.32441320239134 9 NA NA -5.76445299265382 LTS-029 chr4 1333955 1341774 7820 * UVSSA NA 0 NA 2.021 1 NA NA NA NA NA LTS-029 chr4 1341775 1346903 5129 * UVSSA 0.46 1 NA 2.22164366748168 23 0.409652050369019 13 13 0 -5.76442042023834 LTS-029 chr4 1346904 3487237 2140334 * c(MIR943, MIR4800, HTT-AS, MFSD10, TACC3, MXD4, ADD1, FAM53A, FGFR3, CRIPAK, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, MSANTD1, POLN, LETM1, C4orf48, CFAP99, UVSSA, ZFYVE28, RGS12, RNF4, SH3BP2, SCARNA22, WHSC1, NELFA, SLBP, TNIP2, HAUS3, NOP14, FAM193A, TMEM129) 0.431184753613435 63 0.0845367909375404 2.30431873931193 3763 0.616181808992558 13 7 6 -6.7446908431918 LTS-029 chr4 3487238 3589689 102452 * c(DOK7, LINC00955, LRPAP1) 0.266 1 NA 2.48057532344778 211 0.677361689569873 14 14 0 -5.76444574299367 LTS-029 chr4 3589690 4207728 618039 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.257033015142107 17 0.109195419802675 2.45599283675787 110 1.08089501819879 16 12 4 -6.73852083636212 LTS-029 chr4 4207729 4238746 31018 * c(OTOP1, TMEM128) 0.492 1 NA 2.16408230410822 15 0.454391188714033 12 12 0 -5.76446934270297 LTS-029 chr4 4238747 16900302 12661556 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, CRMP1, LINC01085, JAKMIP1, TRMT44, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, CCDC96, BOD1L1, FBXL5, NSG1, GPR78, LOC285484, LINC01097, LINC01096, FAM200B, HMX1, USP17L6P, USP17L9P, CPEB2-AS1, NA NA NA NA NA NA NA NA NA LTS-029 MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, NKX3-2, AFAP1, S100P, DEFB131, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.423877045158001 165 0.0764704910020016 2.33639858953107 6038 0.632893718047547 13 7 6 -6.7483093686751 LTS-029 NA NA NA NA LTS-029 chr4 17487987 24543674 7055688 * c(SLIT2-IT1, LOC100505912, PPARGC1A, PACRGL, DHX15, ADGRA3, LCORL, FAM184B, KCNIP4-IT1, MIR218-1, LAP3, DCAF16, GBA3, QDPR, NCAPG, CLRN2, MIR573, MED28, KCNIP4, SLIT2) 0.380804577769501 48 0.0887542527200051 1.77141753386566 1758 1.05155575562646 10 6 4 -6.75040880914722 LTS-029 chr4 24543675 24544504 830 * DHX15 NA 0 NA 1.454 1 NA NA NA NA NA LTS-029 chr4 24544505 40426677 15882173 * c(MIR4275, MIR4801, UGDH-AS1, TLR6, SLC34A2, PTTG2, LIAS, ARAP2, KLB, DHX15, SMIM14, TBC1D1, SEL1L3, PDS5A, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, SEPSECS, KLF3, RBM47, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, SOD3, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, TMEM156, TLR10, CCKAR, CCDC149, FAM114A1 NA NA NA NA NA NA NA NA NA LTS-029 ) 0.436601149257999 93 0.10808113522052 1.34222017868174 4750 0.384961475630294 7 4 3 -6.89883342406211 LTS-029 NA NA NA NA LTS-029 chr4 40426678 40763264 336587 * c(MIR4802, RBM47, NSUN7) 0 1 NA 1.26806804768495 95 0.713796374990521 7 7 0 -5.7644539431732 LTS-029 chr4 40763265 41265331 502067 * c(UCHL1-AS1, APBB2, UCHL1, NSUN7) 0.390644265863063 5 0.213862572695645 1.34415165966893 325 0.452766976789005 7 4 3 -6.74235441320299 LTS-029 chr4 41265332 49063872 7798541 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, UCHL1, CWH43, PHOX2B) 0.31453452864138 88 0.111201107862106 1.09815099492808 4138 0.358963551681642 6 4 2 -6.80176755001771 LTS-029 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.962654600405029 5 0.0773608428082321 5 NA NA -5.76441403047386 LTS-029 chr4 52709193 52714511 5319 * DCUN1D4 0.397 1 NA 1.09779636612759 17 0.303742997982718 6 6 0 -5.76441938648202 LTS-029 chr4 52714512 57175099 4460588 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, NMU, SPATA18, PDCL2, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, DANCR, KIAA1211, LOC644145, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1, CLOCK, CEP135) 0.325423492170431 31 0.100107898778515 1.11360110089927 2221 0.311155222825959 6 4 2 -6.76823308079155 LTS-029 chr4 57175100 57887102 712003 * c(THEGL, PAICS, ARL9, AASDH, POLR2B, PPAT, KIAA1211, REST, SPINK2, SRP72, NOA1, HOPX) 0.338107570636418 12 0.112095603136003 1.00236695993917 990 0.249619119724492 6 4 2 -6.81735293680591 LTS-029 chr4 57887103 57887150 48 * POLR2B 0.329 1 NA 1.362 1 NA NA NA NA NA LTS-029 chr4 57887151 68358697 10471547 * c(EPHA5-AS1, CENPC, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134, POLR2B) 0.308906358703159 18 0.121478272082851 1.18773641391129 698 0.38245115191435 6 4 2 -6.96264867185451 LTS-029 chr4 68358698 68906584 547887 * c(CENPC, STAP1, GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.327682928236239 21 0.120332159340006 1.03697762596719 676 0.335247443925792 6 4 2 -6.76874940395792 LTS-029 chr4 68906585 68907388 804 * UBA6-AS1 NA 0 NA 0.292270496281904 42 0.283395314324681 1 NA NA -5.76441140561501 LTS-029 chr4 68907389 69363297 455909 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.351305157179759 11 0.0495989369387545 1.12370938961949 408 0.290305777701535 6 4 2 -6.73381404066442 LTS-029 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.723 1 NA NA NA NA NA LTS-029 chr4 69402959 69434316 31358 * UGT2B17 NA 0 NA 0.646348981843355 41 0.134657261403834 3 NA NA -5.76632184305243 LTS-029 chr4 69434317 69512310 77994 * character(0) NA 0 NA 2.989 1 NA NA NA NA NA LTS-029 chr4 69512311 73940465 4428155 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, UGT2A1, CSN1S1, CSN2, CSN3, DCK, RUFY3, AMBN, FDCSP, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, GRSF1, HTN1, HTN3, JCHAIN, PRR27, AMTN, MUC7, UGT2B28, ODAM, UTP3, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.28759404197789 36 0.127370883892246 1.10834259366366 2227 0.40096683784847 6 4 2 -6.87316741624784 LTS-029 chr4 73940466 73956736 16271 * ANKRD17 0.405 1 NA 1.0962749052338 63 0.302590878301604 6 6 0 -5.76444369768802 LTS-029 chr4 73956737 74005412 48676 * ANKRD17 0.388 1 NA 1.10114673829499 113 0.199898006547068 6 6 0 -5.76453958076045 LTS-029 chr4 74005413 74005511 99 * ANKRD17 NA 0 NA 0.9 1 NA NA NA NA NA LTS-029 chr4 74005512 75972171 1966660 * c(PPBPP2, RASSF6, AFM, AFP, EREG, ALB, EPGN, PARM1, ANKRD17, CXCL1, CXCL2, CXCL3, CXCL8, AREG, MTHFD2L, PF4, PF4V1, PPBP, CXCL6, CXCL5, BTC, LOC728040) 0.455052464588011 23 0.0323414344061398 0.814777657162186 1117 0.206639389554494 4 2 2 -7.39005826469897 LTS-029 chr4 75972172 79793104 3820933 * c(FAM47E, LINC01094, MIR4450, FAM47E-STBD1, CXCL13, CCNI, THAP6, C4orf26, CNOT6L, PARM1, RCHY1, NAAA, ANXA3, CCDC158, SOWAHB, CXCL10, ART3, CXCL9, LOC441025, NUP54, PPEF2, SDAD1, BMP2K, SEPT11, SHROOM3, CXCL11, MRPL1, FRAS1, USO1, STBD1, CDKL2, CCNG2, SCARB2, G3BP2) 0.442907959796287 73 0.0830832045221427 0.757678334431129 3376 0.204090978305203 4 2 2 -6.84365547126965 LTS-029 chr4 79793105 79793727 623 * BMP2K NA 0 NA 0.992 1 NA NA NA NA NA LTS-029 chr4 79793728 79860477 66750 * c(PAQR3, BMP2K) 0.335313839866842 20 0.0937044064570802 1.10617466988918 303 0.355207987862974 6 4 2 -6.74716791844486 LTS-029 chr4 79860478 80246288 385811 * c(LINC01088, PAQR3, NAA11) NA 0 NA 0.888 1 NA NA NA NA NA LTS-029 chr4 80246289 84465804 4219516 * c(THAP9-AS1, LINC00989, HPSE, HELQ, PCAT4, ANTXR2, LIN54, RASGEF1B, FGF5, SEC31A, C4orf22, GK2, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, NAA11, GPAT3, HNRNPDL) 0.440343137912925 46 0.103532358590744 0.734773034939417 2181 0.225936059635911 4 2 2 -6.9625726475118 LTS-029 chr4 84465805 84502671 36867 * GPAT3 NA 0 NA 0.865 1 NA NA NA NA NA LTS-029 chr4 84502672 90856680 6354009 * c(LOC100506746, MIR4451, MIR5705, PYURF, FAM13A, CDS1, C4orf36, PPM1K, TIGD2, DMP1, DSPP, MMRN1, WDFY3, NAP1L5, FAM13A-AS1, GPRIN3, IBSP, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, NKX6-1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, MEPE, KLHL8, PTPN13, SNCA-AS1, SNCA, SPP1, ARHGAP24, SPARCL1, GPAT3, HERC3, ABCG2) 0.453174624014455 62 0.0676758847994988 0.777503565372055 3650 0.6020997767338 4 2 2 -6.8710155944925 LTS-029 chr4 90856681 98865141 8008461 * c(STPG2-AS1, PDLIM5, MMRN1, HPGDS, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.429916096560507 33 0.11318865821488 0.839195843621241 1439 0.272161907938524 4 2 2 -7.01568221723555 LTS-029 chr4 98865142 108874039 10008898 * c(MIR3684, LOC100507053, GIMD1, LINC01216, ARHGEF38-IT1, TSPAN5, CENPE, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, SGMS2, EIF4E, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, STPG2, H2AFZ, PCNAP1, MANBA, MTTP, NFKB1, CISD2, EMCN, TET2, ARHGEF38, BANK1, PPP3CA, BDH2, INTS12, RAP1GDS1, SLC39A8, TACR3, UBE2D3, GSTCD, DNAJB14, CXXC4, C4orf17, LAMTOR3, FLJ20021, PAPSS1, NA NA NA NA NA NA NA NA NA LTS-029 AIMP1, TRMT10A, TBCK) 0.436327892349931 132 0.0952822617447352 0.767965132724209 4921 0.334902779800735 4 2 2 -6.77458707178119 LTS-029 NA NA NA NA LTS-029 chr4 108874040 108956054 82015 * c(CYP2U1, HADH) 0 1 NA 0.844868546245516 77 0.243599707508632 4 4 0 -5.76892382289824 LTS-029 chr4 108956055 111484879 2528825 * c(SEC24B-AS1, SEC24B, RRH, EGF, ENPEP, RPL34-AS1, HADH, CFI, LRIT3, LEF1, GAR1, MCUB, OSTC, RPL34, LEF1-AS1, ETNPPL, ELOVL6, PLA2G12A, CASP6, COL25A1) 0.337290313772651 15 0.206408909922121 0.766649363474714 1464 0.288653576032101 4 3 1 -6.7756534535684 LTS-029 chr4 111484880 111542124 57245 * PITX2 0.5 1 NA 0.815491190900125 81 0.258808497294051 4 4 0 -5.76516672943644 LTS-029 chr4 111542125 151207127 39665003 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, LINC01095, MIR4799, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, PLK4, PRDM5, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, ZNF827, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, SYNPO2, EDNRA, ELF2, FABP2, FGF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, LINC01091, ANK2, GYPA, GYPB, GYPE, ANXA5, IL2, NA NA NA NA NA NA NA NA NA LTS-029 IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, MIR302B, NDUFC1, LARP7, MYOZ2, PITX2, EXOSC9, PCDH18, USP53, POU4F2, OTUD4, LARP1B, BBS7, ZGRF1, AP1AR, MAML3, TMEM184C, ANKRD50, RNF150, PCDH10, METTL14, IL21, ABCE1, SCOC, NEUROG2, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, SNORA24, MIR577, TRPC3, CETN4P, UCP1, UGT8, NDNF, FAT4, ARSJ, ARHGAP10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 TNIP3, JADE1, NAA15, ABHD18, ALPK1, SETD7, CAMK2D, SLC25A31, RAB33B, TTC29, SLC10A7, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, PRSS12, PDE5A, INPP4B, CCNA2, PRMT9, TIFA, NDST3, LRBA, SEC24D) 0.420249232789108 235 0.112869737612289 0.77668099890463 12365 0.357202271002502 4 2 2 -6.75293178695042 LTS-029 NA NA NA NA LTS-029 chr4 151207128 151683052 475925 * c(MAB21L2, LRBA) NA 0 NA 0.766190010532146 175 0.149952638828483 4 NA NA -5.77168310137617 LTS-029 chr4 151683053 151719168 36116 * LRBA NA 0 NA 0.3 1 NA NA NA NA NA LTS-029 chr4 151719169 152025777 306609 * c(RPS3A, SNORD73A, LRBA) 0.18 1 NA 0.441682957333319 225 0.106380170868298 2 2 0 -5.77594389326358 LTS-029 chr4 152025778 155720349 3694572 * c(MIR3140, SH3D19, RBM46, TIGD4, TMEM154, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, GATB, PLRG1, DKFZP434I0714, DCHS2, FBXW7, RPS3A, SFRP2, TLR2, FAM160A1, MND1, FHDC1, LRAT) 0.136147601470957 62 0.0578369304470122 0.455630239971905 2393 0.147702129459645 2 2 0 -6.73518637376349 LTS-029 chr4 155720350 155749938 29589 * RBM46 NA 0 NA 0.446205444189835 52 0.0948338926469336 2 NA NA -5.76494587636733 LTS-029 chr4 155749939 156643183 893245 * c(RBM46, GUCY1A3, NPY2R, MAP9) 0.459 1 NA 0.846488311611828 312 0.653669882177428 4 4 0 -5.7715932119527 LTS-029 chr4 156643184 159046944 2403761 * c(CTSO, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, FAM198B, ASIC5, PDGFC, TDO2) 0.436862866006841 13 0.0459249666750294 0.845740395396197 716 0.260771982791527 4 2 2 -6.92515621435892 LTS-029 chr4 159046945 184130294 25083350 * c(MIR1305, MIR4276, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, AGA, C4orf46, TMEM192, ETFDH, PALLD, ANP32C, FBXO8, GK3P, GPM6A, LINC01098, HMGB2, HPGD, TRIM61, FAM92A1P2, GALNTL6, NEK1, NPY1R, NPY5R, SPOCK3, AADAT, FAM198B, GALNT7, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, NA NA NA NA NA NA NA NA NA LTS-029 DDX60, TENM3, FSTL5, FNIP2, SH3RF1, RXFP1, SPCS3, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, TKTL2, CBR4, SAP30, LOC90768, DDX60L, NAF1, HAND2, RAPGEF2, MFAP3L) 0.437040152727951 130 0.0902459053625417 0.789035583599241 6174 0.35535703012344 4 2 2 -6.75674787481435 LTS-029 NA NA NA NA LTS-029 chr4 184130295 184161279 30985 * WWC2 NA 0 NA 1.468 1 NA NA NA NA NA LTS-029 chr4 184161280 184243640 82361 * c(CLDN24, CLDN22, WWC2) 0.353187651994256 5 0.027116415692344 1.10310556315081 235 0.3046956809844 6 4 2 -6.74299578946038 LTS-029 chr4 184243641 184365691 122051 * character(0) NA 0 NA 0.384 1 NA NA NA NA NA LTS-029 chr4 184365692 186541324 2175633 * c(MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.43998125786301 52 0.0949329047815161 0.738016251856982 1849 0.211280323732178 4 2 2 -6.86661143665552 LTS-029 chr4 186541325 186544037 2713 * SORBS2 NA 0 NA 0.82 1 NA NA NA NA NA LTS-029 chr4 186544038 188925815 2381778 * c(ZFP42, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, KLKB1, MTNR1A, FLJ38576, TLR3, SORBS2) 0.464738758392614 16 0.0417228953932969 0.816093694467107 1006 0.187219549302839 4 2 2 -7.40448514346403 LTS-029 chr4 188925816 189012680 86865 * c(ZFP42, TRIML2) 0.422 1 NA 0.919727978289395 13 0.564402122967531 5 5 0 -5.76458540048452 LTS-029 chr4 189012681 190981487 1968807 * c(TRIML2, FRG1, TRIML1, LINC01060) 0.264421191816773 9 0.182407510810273 0.852571425573735 278 0.482815220721888 4 3 1 -6.77847929201802 LTS-029 chr4 190981488 190981567 80 * character(0) NA 0 NA 0.787 1 NA NA NA NA NA LTS-029 chr5 140347 140374 28 * PLEKHG4B 0 1 NA 4.344 1 NA NA NA NA NA LTS-029 chr5 140375 223646 83272 * c(CCDC127, PLEKHG4B, LRRC14B, SDHA) 0.0373803456473859 24 0.0201444062074134 1.43114659196914 366 0.910437999162017 9 9 0 -6.73475971714796 LTS-029 chr5 223647 427958 204312 * c(PDCD6, AHRR, SDHA) NA 0 NA 1.30319690469788 156 0.330794028496084 7 NA NA -5.76472678721624 LTS-029 chr5 427959 432905 4947 * AHRR 0.058 1 NA 0.970642790060486 11 0.298813350072948 5 5 0 -5.76442500229386 LTS-029 chr5 432906 712144 279239 * c(MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, PP7080, CEP72, AHRR, SLC9A3) 0.128738213346907 38 0.0971548748199504 1.02217761936615 574 0.418277462007288 8 7 1 -6.89664488781906 LTS-029 chr5 712145 716871 4727 * character(0) NA 0 NA 3.105 1 NA NA NA NA NA LTS-029 chr5 716872 767084 50213 * character(0) 0.0568064046907306 5 0.104126365537264 3.22172823541038 62 1.30755958930655 20 19 1 -6.73800926915301 LTS-029 chr5 767085 795961 28877 * ZDHHC11 0.293 1 NA 4.19530143763591 7 1.2163345012979 20 20 0 -5.76487980419799 LTS-029 chr5 795962 796495 534 * ZDHHC11 0.319818538278056 8 0.0763262499312748 3.35883021574932 22 1.30141950555431 16 11 5 -6.73305268226467 LTS-029 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 0.971 1 NA NA NA NA NA LTS-029 chr5 801171 840506 39336 * ZDHHC11 0.20286951981986 2 0.224859956417322 1.34772900974197 64 0.896793140310482 6 5 1 -6.73407901209182 LTS-029 chr5 840507 1038088 197582 * c(LOC100506688, BRD9, ZDHHC11, NKD2, TRIP13) 0.045 1 NA 1.21605189697554 289 0.393434573835204 7 7 0 -5.76651212925517 LTS-029 chr5 1038089 5223125 4185037 * c(MIR4277, MIR4457, MIR4635, SLC12A7, C5orf38, IRX2, ADAMTS16, LINC01019, SLC6A19, LINC01020, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, TERT, SDHAP3, LOC728613, IRX1, LPCAT1, CLPTM1L, NKD2) 0.0506151660820486 35 0.0254089906671377 1.12805722224709 1306 0.476925752486537 6 6 0 -6.75258106195514 LTS-029 chr5 5223126 5223231 106 * ADAMTS16 NA 0 NA 0.74 1 NA NA NA NA NA LTS-029 chr5 5223232 6755460 1532229 * c(PAPD7, UBE2QL1, ADAMTS16, ICE1, LINC01018, FLJ33360, NSUN2, SRD5A1, MED10) 0.0864914762024704 18 0.0288645699550991 0.794900896605231 696 0.206927220826177 4 4 0 -6.78551242987647 LTS-029 chr5 6755461 7306615 551155 * c(MIR4278, MIR4454, PAPD7, LOC442132) 0.304 1 NA 0.771680735256843 43 0.158344011996366 4 4 0 -5.76813260464569 LTS-029 chr5 7306616 7306654 39 * LOC442132 NA 0 NA 0.72 1 NA NA NA NA NA LTS-029 chr5 7306655 7396380 89726 * c(ADCY2, LOC442132) NA 0 NA 1.113 1 NA NA NA NA NA LTS-029 chr5 7396381 17276984 9880604 * c(SNORD123, LOC100130744, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4637, MIR4636, MARCH6, BASP1, ADCY2, C5orf49, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, FBXL7, LOC285692, LOC285696, LINC01194, MARCH11, MTRR, MYO10, TAS2R1, FAM134B, FAM105A, ANKH, ANKRD33B, TRIO, LOC729506, FASTKD3, ROPN1L, OTULIN, SEMA5A, ZNF622) 0.277065812765621 41 0.0787025428045526 1.03051618066037 3387 0.28326186654237 5 4 1 -7.32086860473105 LTS-029 chr5 19473164 25190804 5717641 * c(CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, GUSBP1) 0.21180464469272 3 0.0406324993078201 1.37468376183993 392 0.334646342603162 7 6 1 -7.28716611713631 LTS-029 chr5 25909443 41154140 15244698 * c(CDH6, MIR4279, MIR3650, EGFLAM-AS2, LOC100506548, CDH9, EGFLAM-AS4, GDNF-AS1, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, DAB2, UGT3A2, RANBP3L, PDZD2, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, GDNF, DROSHA, LOC340113, IL7R, LIFR, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRKAA1, PRLR, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, NA NA NA NA NA NA NA NA NA LTS-029 SLC1A3, C5orf42, TARS, MIR580, C6, LSP1P3, C7, C9, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.294645525383688 147 0.0959990069606639 1.03041804876228 7505 0.320438423289307 6 4 2 -7.44248067542964 LTS-029 NA NA NA NA LTS-029 chr5 41154141 41154999 859 * C6 NA 0 NA 0.733 1 NA NA NA NA NA LTS-029 chr5 41155000 42721362 1566363 * c(FBXO4, GHR, C5orf51, PLCXD3, OXCT1, C6) 0.314588599664104 6 0.237312171341182 0.734772148664936 666 0.263996679215596 4 3 1 -6.79786940662978 LTS-029 chr5 42721363 42769844 48482 * c(CCDC152, GHR) 0.392 1 NA 0.672887214578513 31 0.1142815049148 3 3 0 -5.77977675971058 LTS-029 chr5 42769845 44809162 2039318 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, MRPS30, LOC153684, NIM1K, FGF10, NNT, HMGCS1, C5orf34, ANXA2R, CCL28, SELENOP, TMEM267, LOC648987, ZNF131) 0.446459529735747 29 0.0893640503644332 0.699633311909281 891 0.240457332584293 4 2 2 -7.0501871649161 LTS-029 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.826855026082567 149 0.179571392232723 4 NA NA -5.80914480458017 LTS-029 chr5 49692017 49698180 6164 * EMB 0.41 1 NA 0.644969042506145 68 0.20716461360247 3 3 0 -5.7645535119434 LTS-029 chr5 49698181 68850480 19152300 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, NA NA NA NA NA NA NA NA NA LTS-029 FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.396689514812312 135 0.110576094327915 0.661028286464946 8193 0.265792929749709 3 2 1 -7.41327393798297 LTS-029 NA NA NA NA LTS-029 chr5 68850481 68862324 11844 * c(OCLN, GTF2H2C) NA 0 NA 0.373 1 NA NA NA NA NA LTS-029 chr5 68862325 70751818 1889494 * c(GUSBP9, NA, SMA4, SMA5, GTF2H2, LOC441081, NAIP, PMCHL2, BDP1, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.394199150944402 3 0.0835244475188752 0.529284682125294 135 0.177753059123154 2 1 1 -7.54319995556214 LTS-029 chr5 70751819 70751822 4 * BDP1 NA 0 NA 0.637 1 NA NA NA NA NA LTS-029 chr5 70751823 90449154 19697332 * c(CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-029 NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.413044102718227 194 0.092999258348167 0.675890797468389 9764 0.320856943661873 3 2 1 -7.67380718356675 LTS-029 NA NA NA NA LTS-029 chr5 90449155 93217335 2768181 * c(ARRDC3-AS1, MIR2277, POU5F2, NR2F1-AS1, ARRDC3, NR2F1, FAM172A, ADGRV1) NA 0 NA 0.647677088939935 292 0.131077123141612 3 NA NA -5.95390842415571 LTS-029 chr5 93217336 93720017 502682 * c(KIAA0825, FAM172A) 0.093 1 NA 0.467263930325618 49 0.128302443495059 2 2 0 -5.78046324430961 LTS-029 chr5 93720018 96369179 2649162 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.151953079846649 56 0.0506031542572123 0.440787854618974 2336 0.143211190256953 2 2 0 -6.86131753833462 LTS-029 chr5 96369180 96371342 2163 * character(0) 0 1 NA 0.747348962532277 45 0.260030320687353 4 4 0 -5.76445590385473 LTS-029 chr5 96371343 100147398 3776056 * c(LOC100133050, LOC100289230, CHD1, LIX1, RGMB, FAM174A, RGMB-AS1, RIOK2, ST8SIA4) 0.167582880090273 14 0.0296685907101311 0.462791079161262 648 0.152943873422515 2 2 0 -7.41324730798019 LTS-029 chr5 100147399 100236225 88827 * ST8SIA4 NA 0 NA 0.446631649914331 55 0.0835150826112806 2 NA NA -5.76625019142409 LTS-029 chr5 100236226 100238466 2241 * ST8SIA4 NA 0 NA 0.697 1 NA NA NA NA NA LTS-029 chr5 100238467 101570689 1332223 * c(SLCO4C1, ST8SIA4) 0.443 1 NA 1.02048038659572 31 1.56943346123603 5 5 0 -5.76605577472988 LTS-029 chr5 101570690 112043556 10472867 * c(LOC100289673, STARD4-AS1, LINC01023, NREP-AS1, EPB41L4A-AS1, SLCO6A1, STARD4, WDR36, EFNA5, FER, PPIP5K2, APC, SLCO4C1, MAN2A1, PAM, EPB41L4A-AS2, GIN1, EPB41L4A, TMEM232, FBXL17, SNORA13, CAMK4, NUDT12, TSLP, C5orf30, SLC25A46, NREP, RAB9BP1, PJA2) 0.418213754277534 83 0.132005675574117 0.787198308070072 2855 0.248030670201702 4 2 2 -6.73418661253662 LTS-029 chr5 112043557 112090513 46957 * APC NA 0 NA 1.184 1 NA NA NA NA NA LTS-029 chr5 112090514 112385042 294529 * c(DCP2, APC, MCC, SRP19, REEP5) NA 0 NA 1.01736549587174 783 0.285710877204922 5 NA NA -5.77445172347495 LTS-029 chr5 112385043 112389413 4371 * MCC NA 0 NA 0.773 1 NA NA NA NA NA LTS-029 chr5 112389414 126705624 14316211 * c(TMED7-TICAM2, LOC100505841, CDO1, MARCH3, AP3S1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, LVRN, TNFAIP8, DTWD2, SNX24, HSD17B4, FAM170A, TICAM2, KCNN2, TEX43, LMNB1, C5orf63, LOX, MCC, ALDH7A1, TMED7, PRR16, COMMD10, PHAX, PGGT1B, PPIC, TRIM36, FEM1C, ZNF608, SEMA6A, ARL14EPL, YTHDC2, GRAMD3, SNX2, LINC00992, TSSK1B, MEGF10, ATG12, PRDM6, FTMT, SNCAIP) 0.431992381799484 78 0.106287742703871 0.798063019382828 4111 0.237176601458217 4 2 2 -6.78294226838953 LTS-029 chr5 126705625 128844838 2139214 * c(MIR4633, MIR4460, PRRC1, ADAMTS19, FBN2, SLC27A6, ISOC1, CTXN3, LINC01184, SLC12A2, MEGF10) 0.448265935310018 26 0.0958799569975193 0.855186406553659 1216 0.233836538981517 4 2 2 -6.95165246988085 LTS-029 chr5 128844839 128863578 18740 * ADAMTS19 0 1 NA 0.82072748188541 11 0.16096984471972 4 4 0 -5.76528149021566 LTS-029 chr5 128863579 129244096 380518 * c(KIAA1024L, ADAMTS19, CHSY3) 0.380280580157 4 0.14189550145559 0.838875734104252 174 0.203212960156588 4 2 2 -6.80522850660259 LTS-029 chr5 129244097 129519934 275838 * CHSY3 NA 0 NA 0.978 1 NA NA NA NA NA LTS-029 chr5 129519935 134332018 4812084 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, NA NA NA NA NA NA NA NA NA LTS-029 FNIP1, DDX46) 0.362777537663055 100 0.0831499041830871 1.02882703573584 4579 0.388031356576784 6 4 2 -6.87179454063813 LTS-029 NA NA NA NA LTS-029 chr5 134332019 137087498 2755480 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.357563564445591 32 0.0482771630878043 1.14379469936007 1321 0.414899504100933 6 4 2 -6.75474584930899 LTS-029 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.99 1 NA NA NA NA NA LTS-029 chr5 137087505 140553623 3466119 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, NA NA NA NA NA NA NA NA NA LTS-029 PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.366823639233318 89 0.0626623509351437 1.05422109853082 5342 0.253117854909087 6 4 2 -6.88063696883731 LTS-029 NA NA NA NA LTS-029 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.32 1 NA NA NA NA NA LTS-029 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.299446054598003 5 0.166561400090177 0.422745284039916 66 0.641279823209035 4 3 1 -6.73775310949421 LTS-029 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.066 1 NA NA NA NA NA LTS-029 chr5 140559822 150639439 10079618 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TNIP1, CDX1, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, ZNF300P1, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, SLC26A2, STK32A, FGF1, ABLIM3, HMGXB3, ARHGAP26, PCDHGA12, CCDC69, IL17B, GM2A, RELL2, GPX3, NR3C1, ANXA6, NDST1, HTR4, ARSI, IRGM, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, NA NA NA NA NA NA NA NA NA LTS-029 PCDH1, PCDHGC3, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PCDHB18P, PPP2R2B, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, RPS14, GRXCR2, SPINK9, ARAP3, SLC6A7, SPINK1, TAF7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 TCOF1, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, SPINK7, SMIM3, PCDHGB4, HDAC3, FCHSD1, ZNF300, MYOZ3, RNF14, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.347346587847557 209 0.0829793362959496 1.08753493663749 9985 1.4829728412157 6 4 2 -6.73533573785556 LTS-029 NA NA NA NA LTS-029 chr5 150639440 150648237 8798 * GM2A 0 1 NA 0.993272874430472 41 0.270811233870096 5 5 0 -5.76455071808382 LTS-029 chr5 150648238 150727231 78994 * c(SLC36A2, GM2A, SLC36A3) 0 2 0 0.974652813319661 211 0.442466761288808 0 0 0 -Inf LTS-029 chr5 150727232 150838244 111013 * SLC36A1 NA 0 NA 0.653 1 NA NA NA NA NA LTS-029 chr5 150838245 160061635 9223391 * c(C5orf52, MIR3142, MIR3141, LOC100652758, G3BP1, SLU7, FAXDC2, FAM114A2, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, PPP1R2P3, FAM71B, RNF145, EBF1, SLC36A1, FABP6, FAT2, ATP10B, LARP1, GEMIN5, HAVCR1, CYFIP2, GLRA1, LOC285626, LOC285627, KIF4B, GRIA1, MRPL22, NIPAL4, IL12B, ITK, SAP30L-AS1, MIR146A, FNDC9, MFAP3, ATOX1, THG1L, GALNT10, NMUR2, ZBED8, SGCD, SPARC, TTC1, CCNJL, SAP30L, HAVCR2, ADAM19, NA NA NA NA NA NA NA NA NA LTS-029 TIMD4, PTTG1, CNOT8, HAND1, MED7, CLINT1) 0.0779737635851221 101 0.0324331147238909 0.757525295546425 5294 0.293454129758015 4 4 0 -6.81217414090714 LTS-029 NA NA NA NA LTS-029 chr5 160061636 160063198 1563 * ATP10B NA 0 NA 1 1 NA NA NA NA NA LTS-029 chr5 160063199 175386653 15323455 * c(FAM196B, LOC100268168, MIR103B1, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NUDCD2, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, ATP10B, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, MAT2B, EFCAB9, SH3PXD2B, LOC285593, LOC285629, TLX3, KCNIP1, HMMR, HRH2, FBLL1, KCNMB1, LCP2, MIR103A1, MIR218-2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, TENM2, RARS, RANBP17, NA NA NA NA NA NA NA NA NA LTS-029 SLIT3, BNIP1, SNORA74B, STK10, MIR585, PANK3, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, CCNG1, BOD1, UBTD2, SFXN1) 0.0524998226251346 95 0.0257593827696219 1.09392358714411 5418 0.539554122412125 6 6 0 -6.75139085589682 LTS-029 NA NA NA NA LTS-029 chr5 175386654 175387321 668 * THOC3 NA 0 NA 0.293303085891681 40 0.223101098159556 1 NA NA -5.76441276357028 LTS-029 chr5 175387322 175394264 6943 * THOC3 NA 0 NA 0.653839444403641 47 0.451791952725634 3 NA NA -5.76447064025473 LTS-029 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.588 1 NA NA NA NA NA LTS-029 chr5 175395033 180374817 4979785 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-029 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.0741230383365782 130 0.0572280981481175 1.05472766724153 6966 0.374087305328323 6 6 0 -6.86602592729324 LTS-029 NA NA NA NA LTS-029 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 0.132 1 NA NA NA NA NA LTS-029 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 0.161216657790478 67 0.137119235550772 0 NA NA -5.89304756311168 LTS-029 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 1.158 1 NA NA NA NA NA LTS-029 chr5 180430826 180661256 230431 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.0514584285305718 14 0.0202208955139137 1.06903265191485 372 0.548930017773887 6 6 0 -6.75278524635481 LTS-029 chr5 180661257 180688111 26855 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 1.05253221326753 163 0.181134824748866 6 NA NA -5.76608808155626 LTS-029 chr6 203389 335251 131863 * DUSP22 0.335 1 NA 0.887007888032652 33 0.169661248946067 5 5 0 -5.77745030341154 LTS-029 chr6 335252 5261219 4925968 * c(MIR3691, LOC100507194, GMDS-AS1, MIR4645, ECI2, RPP40, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1, CDYL) 0.342310317889138 65 0.0831624106099717 1.01200528613274 2426 0.27913140291565 6 4 2 -7.07979409652184 LTS-029 chr6 5261220 5368721 107502 * FARS2 NA 0 NA 1.269 1 NA NA NA NA NA LTS-029 chr6 5368722 8435594 3066873 * c(SCARNA27, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, FARS2, SNRNP48, DSP, PIP5K1P1, F13A1, LY86-AS1, CAGE1, SLC35B3, NRN1, RREB1, BLOC1S5, BMP6, SSR1, TXNDC5, RIOK1, LY86, EEF1E1) 0.310798907552952 41 0.104107050908094 1.07499172772962 1654 0.338581857682259 6 4 2 -6.83797305431754 LTS-029 chr6 9616275 10629253 1012979 * c(TFAP2A-AS1, MIR5689, LINC00518, GCNT2, TFAP2A) 0.266121735520097 4 0.251462886592303 1.40705463478756 416 0.335789965209854 8 6 2 -6.73750660146808 LTS-029 chr6 10629254 10729020 99767 * c(GCNT2, C6orf52, TMEM14C, PAK1IP1) 0.464 1 NA 1.36240808047952 132 0.38062631668906 8 8 0 -5.76591043504552 LTS-029 chr6 10729021 11214705 485685 * c(ELOVL2-AS1, SMIM13, SYCP2L, ERVFRD-1, MAK, NEDD9, TMEM14C, ELOVL2, TMEM14B, GCM2) 0.453347517469481 20 0.0332506826206146 1.33763701720391 824 0.327123281221821 8 4 4 -7.2860792684726 LTS-029 chr6 11214706 11779392 564687 * c(TMEM170B, NEDD9, ADTRP) NA 0 NA 1.26840847644578 301 0.439719723528799 7 NA NA -5.76459403853817 LTS-029 chr6 11779393 12015733 236341 * HIVEP1 NA 0 NA 0.838 1 NA NA NA NA NA LTS-029 chr6 12015734 12016009 276 * HIVEP1 0.311 1 NA 0.827266963567266 5 0.148157011308949 4 4 0 -5.76443105204127 LTS-029 chr6 12016010 18465759 6449750 * c(LOC100130357, RANBP9, MIR4639, CAP2, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, MYLIP, HIVEP1, JARID2, NHLRC1, STMND1, TBC1D7, NOL7, FAM8A1, GFOD1, ATXN1, MCUR1, KIF13A, TPMT, DEK, DTNBP1, CD83, NUP153) 0.327806618735212 60 0.0996683143298608 1.03847930775941 2988 0.265062011602714 6 4 2 -7.03390195803614 LTS-029 chr6 18465760 21231945 2766186 * c(MBOAT1, E2F3, RNF144B, ID4, CDKAL1, MIR548A1) 0.366102597149353 11 0.217124974485789 1.3202243656391 381 0.37323612031224 7 4 3 -6.7702754174855 LTS-029 chr6 21231946 21232615 670 * CDKAL1 0.491 1 NA 1.3425519770198 11 0.155208540064943 7 7 0 -5.76444626363431 LTS-029 chr6 21232616 21232633 18 * CDKAL1 NA 0 NA 1.377 1 NA NA NA NA NA LTS-029 chr6 21232634 21593978 361345 * c(CDKAL1, SOX4) NA 0 NA 0.731 1 NA NA NA NA NA LTS-029 chr6 21593979 21598858 4880 * SOX4 NA 0 NA 1.02690682681003 93 0.259031665877106 5 NA NA -5.76467215956397 LTS-029 chr6 22136726 24467060 2330335 * c(NRSN1, HDGFL1, GPLD1, KAAG1, CASC15, DCDC2, PRL, MRS2, NBAT1) 0.459288874245508 19 0.0290826609785048 1.50018777581973 497 1.14353618583586 8 4 4 -7.64941498303317 LTS-029 chr6 24467061 24467064 4 * GPLD1 NA 0 NA 0.935 1 NA NA NA NA NA LTS-029 chr6 24467065 25820158 1353094 * c(SLC17A4, SCGN, HIST1H2AA, HIST1H2BA, GPLD1, HIST1H2APS1, GMNN, TDP2, CARMIL1, ACOT13, SLC17A1, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.437790227044982 31 0.118423252221287 1.32016391081286 1353 0.407688899445322 7 4 3 -6.76567835721057 LTS-029 chr6 25820159 26017675 197517 * c(SLC17A2, TRIM38, SLC17A3, HIST1H1A, SLC17A1) 0.47 1 NA 1.32290875137683 211 0.236393124425307 7 7 0 -5.76655733563183 LTS-029 chr6 26017676 26240752 223077 * c(HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4B, HIST1H4E) 0.4610476201614 41 0.0301923104408407 1.22566398212096 485 0.380435056343502 6 3 3 -7.66700772866322 LTS-029 chr6 26240753 26374549 133797 * c(BTN3A2, HIST1H2BH, HIST1H2BI, HIST1H3G, HIST1H4F, HIST1H4H, HIST1H4G, HIST1H3F) 0.479 1 NA 1.35509727161355 113 0.18365121294228 7 7 0 -5.77182936035554 LTS-029 chr6 26374550 27806827 1432278 * c(LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, ZNF391, GUSBP2, VN1R10P, HCG11, BTN2A3P, BTN1A1, ZNF184, ZNF204P, ZNF322, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2) 0.447338495714114 27 0.0524025346813076 1.35075989337342 1201 0.39369186461383 8 4 4 -6.91311042318678 LTS-029 chr6 27806828 28212577 405750 * c(ZSCAN16-AS1, ZSCAN12P1, TOB2P1, OR2B6, HIST1H1B, ZKSCAN4, ZNF192P1, ZNF165, ZKSCAN8, ZSCAN9, ZSCAN16, OR2B2, HIST1H2AL, HIST1H2AM, HIST1H2BN, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H4L) 0 1 NA 1.3822705247662 449 0.306893040279718 8 8 0 -5.76982559987619 LTS-029 chr6 28212578 29033053 820476 * c(ZSCAN23, NKAPL, GPX6, ZKSCAN4, ZSCAN31, ZSCAN26, ZKSCAN3, PGBD1, ZSCAN12) 0.338230921726628 9 0.238959085293789 1.37750502443414 953 0.385924172406037 8 5 3 -6.75907480792338 LTS-029 chr6 29033054 29053998 20945 * character(0) 0.424 1 NA 1.39262511546476 7 0.189757740290087 8 8 0 -5.76492281248216 LTS-029 chr6 29053999 31238502 2184504 * character(0) 0.444705762579029 270 0.074527631827558 1.34672607164671 4230 0.814140126083019 8 4 4 -6.8060899381043 LTS-029 chr6 31238503 31323065 84563 * character(0) 0.415051947860557 19 0.0559833935276988 0.926377861356381 55 0.342186535263772 4 2 2 -6.75051408195039 LTS-029 chr6 31323066 31323067 2 * character(0) 0.2 1 NA 1.754 1 NA NA NA NA NA LTS-029 chr6 31323068 31324895 1828 * character(0) 0.316545370999548 15 0.130115699429758 0.959434713188601 41 0.388568272558407 10 7 3 -6.73615062169851 LTS-029 chr6 31324896 31324955 60 * character(0) 0.481 1 NA 0.551 1 NA NA NA NA NA LTS-029 chr6 31324956 31324992 37 * character(0) NA 0 NA 0.927 1 NA NA NA NA NA LTS-029 chr6 31324993 31371205 46213 * character(0) NA 0 NA 1.62 1 NA NA NA NA NA LTS-029 chr6 31371206 31965547 594342 * character(0) 0.442055227754848 65 0.0610576335553927 1.32071558985942 2960 0.301929107971842 8 4 4 -6.83966861345728 LTS-029 chr6 31965548 31973464 7917 * character(0) NA 0 NA 0.686 1 NA NA NA NA NA LTS-029 chr6 31973465 31975635 2171 * character(0) NA 0 NA 0.712387128589858 40 0.203500833174128 4 NA NA -5.76470444087599 LTS-029 chr6 31975636 32013759 38124 * character(0) 0.392832838657723 4 0.0743684520927165 1.05543409028321 188 0.45152157908013 5 3 2 -6.73967809350604 LTS-029 chr6 32013760 32339647 325888 * character(0) 0.468281428377765 26 0.0291533874532618 1.41546544099741 1271 0.312878198658079 8 4 4 -8.02599738818075 LTS-029 chr6 32339648 32427918 88271 * character(0) NA 0 NA 1.39451660375406 104 0.249062959181601 8 NA NA -5.76557698695521 LTS-029 chr6 32427919 32497890 69972 * HLA-DRB5 0.31 1 NA 0.70137043929901 31 0.502534693607884 4 4 0 -5.76650739564738 LTS-029 chr6 32497891 32498118 228 * HLA-DRB5 0.342127907635595 5 0.0257060304208954 0.441051824863074 16 0.318650906165352 12 8 4 -6.73656548441249 LTS-029 chr6 32498119 32546466 48348 * HLA-DRB5 NA 0 NA 1.987 1 NA NA NA NA NA LTS-029 chr6 32546467 32826305 279839 * c(HLA-DQA1, HLA-DRB5) 0.352888513459852 72 0.111036085683636 1.37592055766975 685 0.834906787154372 9 6 3 -6.74258152774123 LTS-029 chr6 32826306 33048723 222418 * character(0) 0.333054813011227 18 0.103241895027595 1.13204787346683 415 4.13289455237723 12 8 4 -6.7401623427942 LTS-029 chr6 33048724 33052693 3970 * character(0) NA 0 NA 1.878 1 NA NA NA NA NA LTS-029 chr6 33052694 33054760 2067 * character(0) NA 0 NA 3.51339722106273 42 39.6657629911392 20 NA NA -5.76441013506431 LTS-029 chr6 33054761 37414112 4359352 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, NA NA NA NA NA NA NA NA NA LTS-029 MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.332130008832966 175 0.0940932179370041 1.048313498362 6647 0.653329406666341 6 4 2 -6.77770885219699 LTS-029 NA NA NA NA LTS-029 chr6 37414113 41658758 4244646 * c(LOC100131047, MIR4641, MIR4462, APOBEC2, BTBD9, FOXP4, CCDC167, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, CMTR1, DAAM2, MDGA1, GLO1, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, SAYSD1, LRFN2, ZFAND3, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.34094919444412 77 0.0925194849330461 1.12510543278865 3078 0.373760783205836 6 4 2 -6.73962593664067 LTS-029 chr6 41658759 43582703 1923945 * c(TOMM6, DNPH1, CNPY3, FRS3, SLC22A7, KLHDC3, TAF8, PTCRA, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, CRIP3, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, PGC, POLH, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, DLK2, SRF, TBCC, BYSL, TFEB, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, CUL7) 0.335311517157354 70 0.100738133969271 1.04842314116086 4293 0.244252408623153 6 4 2 -6.819597690986 LTS-029 chr6 43582704 43583280 577 * POLH NA 0 NA 1.86 1 NA NA NA NA NA LTS-029 chr6 43583281 46623698 3040418 * c(LINC01512, MIR4647, MIR4642, RCAN2, CAPN11, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, ENPP4, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, CYP39A1, CLIC5, POLH, GTPBP2, MRPS18A, TMEM63B, AARS2, ENPP5, MRPL14, MIR586, VEGFA, SUPT3H, RUNX2, SLC25A27, MAD2L1BP, CDC5L) 0.360864762903443 33 0.0394942698183527 1.1122763522259 2075 0.275211378624377 6 4 2 -6.78083391401164 LTS-029 chr6 46623699 46649231 25533 * SLC25A27 0.323 1 NA 1.13804220996795 79 0.218028472453461 6 6 0 -5.7645345496733 LTS-029 chr6 46649232 49825161 3175930 * c(ANKRD66, CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, CD2AP, ADGRF1, TNFRSF21, GLYATL3, MEP1A, PTCHD4, MUT, PGK2, CENPQ, RHAG, CRISP2, PLA2G7) 0.330022421488323 32 0.117034764445056 1.14610267674242 1711 0.394792628912184 6 4 2 -6.75865509504373 LTS-029 chr6 49825162 49913823 88662 * CRISP1 NA 0 NA 1.403 1 NA NA NA NA NA LTS-029 chr6 49913824 50811454 897631 * c(DEFB110, DEFB112, DEFB113, DEFB114, TFAP2B, TFAP2D) 0.111 1 NA 1.36249906460662 172 0.76144266135185 8 8 0 -5.76777461727514 LTS-029 chr6 50811455 51273810 462356 * TFAP2B NA 0 NA 1.139 1 NA NA NA NA NA LTS-029 chr6 51273811 53516408 2242598 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.284918318415922 42 0.125701647487949 1.04844286561827 1872 0.356969130581746 5 4 1 -6.91288110766494 LTS-029 chr6 53516409 57244767 3728359 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, KLHL31, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.33853550915221 65 0.106964403676392 1.12166770158036 2492 0.303366115143069 6 4 2 -6.74020815799874 LTS-029 chr6 57244768 57244780 13 * PRIM2 0.44 1 NA 1.315 1 NA NA NA NA NA LTS-029 chr6 57244781 57512678 267898 * PRIM2 0.347189979791992 45 0.0850637728680397 1.5711287754108 103 0.925213147220593 9 6 3 -6.73379396756903 LTS-029 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.0430175458864 19 0.190217188885149 6 NA NA -5.83417055615795 LTS-029 chr6 62390154 62407067 16914 * KHDRBS2 0.492 1 NA 1.73227358584146 23 0.790526571893422 10 10 0 -5.76442124394598 LTS-029 chr6 62407068 68599104 6192037 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, PTP4A1) 0.454142875035924 28 0.0384103952805548 1.43335829995397 917 0.447491128133223 8 4 4 -7.16402696499258 LTS-029 chr6 69348504 69666520 318017 * ADGRB3 0.421 1 NA 1.16081738752462 37 0.134263825264942 6 6 0 -5.78084965021563 LTS-029 chr6 69666521 69724069 57549 * ADGRB3 0.276 1 NA 1.18451746085532 31 0.439391514740335 6 6 0 -5.76504695201714 LTS-029 chr6 69724070 73951866 4227797 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472, KHDC1) 0.319897263502918 33 0.0807832866002578 1.13024073630647 1726 0.36996844789555 6 4 2 -6.81663380492025 LTS-029 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.953 1 NA NA NA NA NA LTS-029 chr6 73952151 74432870 480720 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.206677011921273 5 0.176342564345651 0.951261159517401 613 0.24590630748976 5 4 1 -6.75291037344092 LTS-029 chr6 74432871 74432923 53 * CD109 0.379 1 NA 1.317 1 NA NA NA NA NA LTS-029 chr6 74432924 84317533 9884610 * c(HMGN3-AS1, LOC100506804, RWDD2A, COL12A1, COX7A2, IRAK1BP1, CD109, PRSS35, LCA5, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3, SNAP91) 0.327538054960259 61 0.0864978662992154 1.1074570208539 3511 0.304117225243319 6 4 2 -6.77586521825557 LTS-029 chr6 84317534 84634192 316659 * c(RIPPLY2, CYB5R4, SNAP91) 0 1 NA 1.16491619570795 147 0.352393427654208 6 6 0 -5.7672362288485 LTS-029 chr6 84634193 85445422 811230 * c(MRAP2, CEP162, CYB5R4, TBX18) 0 1 NA 1.10675936453986 269 0.297118421798713 6 6 0 -5.76478305310223 LTS-029 chr6 85445423 91296539 5851117 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, TBX18, CASP8AP2) 0.0793962103792323 67 0.0357700391850732 0.734547810159179 3673 0.26168753549617 4 4 0 -6.94983848334983 LTS-029 chr6 91296540 93967851 2671312 * c(MIR4643, EPHA7, MAP3K7) 0.0658048058983989 2 0.000707106781186548 0.838004091289047 118 0.216467902009325 5 5 0 -8.57407822917612 LTS-029 chr6 93967852 94129318 161467 * EPHA7 NA 0 NA 0.879550044184206 89 0.195136551544612 5 NA NA -5.77961244918686 LTS-029 chr6 95173701 95173764 64 * character(0) 0.308 1 NA 4.067 1 NA NA NA NA NA LTS-029 chr6 95173765 96057291 883527 * MANEA 0.340665979621762 7 0.053745431699554 1.19741356736459 114 0.343369630389842 6 4 2 -6.77220999840752 LTS-029 chr6 96650976 97058553 407578 * c(FUT9, UFL1, FHL5) 0.123735824365607 2 0.0544472221513642 0.818504592423818 190 0.200201662810923 4 4 0 -7.13639837124246 LTS-029 chr6 97058554 97058574 21 * FHL5 0.08 1 NA 1.28608631443446 3 1.29741756321291 7 7 0 -5.76441013474366 LTS-029 chr6 97058575 105244647 8186073 * c(TSTD3, MIR2113, ASCC3, KLHL32, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, SIM1, MCHR2-AS1, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.0691245365270217 32 0.0321813786067698 0.780653881490284 2005 0.239565450946461 4 4 0 -6.78286634754758 LTS-029 chr6 105244648 105244745 98 * HACE1 NA 0 NA 0.539 1 NA NA NA NA NA LTS-029 chr6 105244746 121629167 16384422 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-029 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.0777078809526978 115 0.0447828935140129 0.745907792077748 8827 0.232560150397909 4 4 0 -7.1685148615158 LTS-029 NA NA NA NA LTS-029 chr6 121629168 121629200 33 * TBC1D32 NA 0 NA 0.823 1 NA NA NA NA NA LTS-029 chr6 121629201 125413764 3784564 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1, RNF217-AS1) 0.0828926045313256 32 0.0322926231214579 0.834359537977635 1225 0.263907127625366 4 4 0 -6.8656335125867 LTS-029 chr6 125413765 125474736 60972 * character(0) NA 0 NA 0.443 1 NA NA NA NA NA LTS-029 chr6 125474737 136564000 11089264 * c(LINC00271, MIR3662, SMLR1, LINC01013, MIR5695, HBS1L, MTFR2, TMEM200A, SLC18B1, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, EPB41L2, EYA4, HEY2, TMEM244, MOXD1, PDE7B, LINC00326, TAAR6, C6orf58, ARG1, HMGA1P7, CENPW, SOGA3, THEMIS, LAMA2, MYB, HDDC2, ENPP1, ENPP3, AHI1, VNN3, ECHDC1, PTPRK, SNORA33, TRMT11, RPS12, LOC643623, CTAGE9, SGK1, ALDH8A1, TCF21, TPD52L1, OR2A4, RNF146, NA NA NA NA NA NA NA NA NA LTS-029 TAAR8, STX7, L3MBTL3, RSPO3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408) 0.0809062458182776 79 0.0345207509481474 0.752544960276102 5190 0.252292284657333 4 4 0 -6.91492529173254 LTS-029 NA NA NA NA LTS-029 chr6 136564001 136597262 33262 * c(MTFR2, BCLAF1) 0.449 1 NA 0.701390507742002 160 0.16536302688442 4 4 0 -5.77360171214525 LTS-029 chr6 136597263 138203733 1606471 * c(LOC100130476, NHEG1, IL22RA2, OLIG3, SLC35D3, IFNGR1, MAP3K5, PEX7, IL20RA, TNFAIP3, MAP7, BCLAF1) 0.387514438263904 8 0.21508764824734 0.752827930186987 805 0.197990723262341 4 2 2 -6.7891994226249 LTS-029 chr6 138203734 138412612 208879 * c(PERP, TNFAIP3) 0.119 1 NA 0.545755975222429 27 0.16484335999164 3 3 0 -5.83702210044906 LTS-029 chr6 138412613 138412798 186 * PERP 0.059 1 NA 0.44664595093037 5 0.15952648682899 2 2 0 -5.76441118097598 LTS-029 chr6 138412799 138483330 70532 * c(ARFGEF3, PERP) 0.0981469584819283 2 0.021920310216783 0.564541964449045 35 0.168937569891982 3 3 0 -6.74675421901745 LTS-029 chr6 138483331 138491780 8450 * ARFGEF3 NA 0 NA 0.875 1 NA NA NA NA NA LTS-029 chr6 138491781 167552899 29061119 * c(UST-AS1, LOC100129518, C6orf99, LOC100132735, AIRN, LOC100289495, MIR1913, MIR3145, MIR3918, MIR3939, MIR3668, MIR3692, GVQW2, LINC01277, LOC100507557, CAHM, MIR4466, MIR4465, RAET1E-AS1, SYNJ2-IT1, RPS6KA2-IT1, UST, EZR-AS1, CITED2, PDE10A, RAB32, KATNA1, FGFR1OP, SFT2D1, GINM1, TAGAP, CCR6, ADAT2, STXBP5, PACRG, RAET1E, LOC153910, ZC2HC1B, CNKSR3, RAET1L, PNLDC1, TXLNB, C6orf118, OSTCP1, ESR1, SCAF8, TAB2, NA NA NA NA NA NA NA NA NA LTS-029 SASH1, SYNE1, HEBP2, FUCA2, SHPRH, CCDC28A, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, PHACTR2-AS1, PACRG-AS1, PRR18, MRPL18, GRM1, HIVEP2, ZC3H12D, ECT2L, IGF2R, NUP43, RAET1G, SUMO4, SAMD5, IYD, ACAT2, DKFZp451B082, LPA, GTF2H5, MAS1, MAP3K4, FLJ46906, LINC00602, NMBR, CLDN20, OPRM1, NOX3, PARK2, PCMT1, TFB1M, AIG1, SNX9, VTA1, MPC1, HECA, PLAGL1, PLG, MTRF1L, RMND1, AGPAT4, TULP4, HYMAI, ADGRG6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 ARFGEF3, NHSL1, PLEKHG1, ARID1B, TMEM181, ZBTB2, ABRACL, PBOV1, RPS6KA2, LINC01625, RPS18P9, RAET1K, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, KATNBL1P6, STXBP5-AS1, TMEM242, LOC729603, UTRN, EZR, VIP, ULBP3, EPM2A, ARMT1, ZDHHC14, ADGB, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, PPP1R14C, SF3B5, RSPH3, FBXO30, FNDC1, LRP11, LTV1, SERAC1, REPS1, PEX3, PPIL4, RNASET2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 STX11, SYNJ2, LINC00473, LATS1, SYTL3, QKI, WTAP, AKAP12, PHACTR2) 0.0770286476853131 301 0.0407767668851758 0.775328808070763 14444 0.474126833728934 4 4 0 -6.74485048995818 LTS-029 NA NA NA NA LTS-029 chr6 167552900 167592656 39757 * c(GPR31, TCP10L2) 0.449 1 NA 0.760663815244562 99 0.38494857859624 4 4 0 -5.76456667051534 LTS-029 chr6 167592657 167788049 195393 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.227591152889508 6 0.107580202639705 0.742392871068563 302 0.303142165881742 5 4 1 -6.81636257790367 LTS-029 chr6 167788050 167789524 1475 * TCP10 0.171421255314839 2 0.0820243866176395 0.428277445782751 49 0.299097461819165 7 6 1 -6.74783885465978 LTS-029 chr6 167789525 167791530 2006 * TCP10 0.371324476508267 3 0.0917405762644498 0.816728098219807 17 0.243655781187072 3 2 1 -6.73936499001415 LTS-029 chr6 167791531 167794634 3104 * TCP10 0.08 1 NA 1.19127561996529 14 1.19206213423132 6 6 0 -5.76441573239316 LTS-029 chr6 167794635 168711170 916536 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, AFDN-AS1, TCP10, FRMD1) 0.0816213036816769 41 0.0271648311016374 0.837929460955237 687 0.255629927409836 4 4 0 -6.77840830206521 LTS-029 chr6 168711171 168711852 682 * DACT2 NA 0 NA 0.707 1 NA NA NA NA NA LTS-029 chr6 168711853 170632383 1920531 * c(LOC154449, DACT2, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, SMOC2, TCTE3, THBS2, LINC00574, FAM120B) 0.0942666630131738 22 0.0545559802254068 0.748839571914346 886 0.214046942313281 4 4 0 -6.83923943669794 LTS-029 chr6 170632384 170893599 261216 * c(MIR4644, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.715199474087168 247 0.164636038521981 4 NA NA -5.81381277556788 LTS-029 chr7 193047 299652 106606 * FAM20C 0.051 1 NA 1.07851623572627 95 0.232031018411417 6 6 0 -5.76578922563257 LTS-029 chr7 299653 1529328 1229676 * c(WI2-2373I1.2, ADAP1, GPR146, SUN1, INTS1, GPER1, UNCX, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, MICALL2, C7orf50, ZFAND2A, COX19) 0.0682905228727983 60 0.0560615355008393 1.08744608135817 1376 0.389274537132911 6 6 0 -6.76953901888342 LTS-029 chr7 1529329 1532650 3322 * INTS1 NA 0 NA 0.744 1 NA NA NA NA NA LTS-029 chr7 1532651 5926027 4393377 * c(RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, PSMG3-AS1, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, TFAMP1, WIPI2, INTS1, GNA12, SNX8, MRM2, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, NUDT1, RNF216, CHST12, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, MAFK, FBXL18, TTYH3, MAD1L1, PSMG3, CARD11, TNRC18, EIF3B, AP5Z1) 0.0839043719892005 132 0.037175150920209 0.759588809358711 3979 0.253779210207631 4 4 0 -6.79023914438098 LTS-029 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.546 1 NA NA NA NA NA LTS-029 chr7 5937950 5958596 20647 * CCZ1 NA 0 NA 0.457083190916153 50 0.137665308421756 2 NA NA -5.7644479965744 LTS-029 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.494 1 NA NA NA NA NA LTS-029 chr7 5959444 5984747 25304 * c(RSPH10B, CCZ1) 0.0382472355713278 3 0.00264575131106459 1.33095106752249 51 0.804694360684631 9 9 0 -6.7347380703287 LTS-029 chr7 5984748 6566442 581695 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2, RAC1, AIMP2, USP42, FAM220A, CYTH3) 0.0955083903665858 24 0.0833147406795025 0.730814652811641 943 0.232264981332494 4 4 0 -6.79140729472095 LTS-029 chr7 6566443 6591008 24566 * GRID2IP 0.117 1 NA 0.670769806165393 25 0.318038781702274 3 3 0 -5.76534297054456 LTS-029 chr7 6591009 6781431 190423 * c(GRID2IP, PMS2CL, ZNF853, ZDHHC4, ZNF12, C7orf26) 0.0941130617458591 6 0.02694191282494 0.719973615676376 335 0.333763404588044 3 3 0 -6.77660977318479 LTS-029 chr7 6781432 6785686 4255 * PMS2CL NA 0 NA 0.076 1 NA NA NA NA NA LTS-029 chr7 6785687 6820534 34848 * c(PMS2CL, RSPH10B2) NA 0 NA 0.348234146869924 44 0.288207578580008 1 NA NA -5.77345949701035 LTS-029 chr7 6820535 6844723 24189 * c(CCZ1B, RSPH10B2) NA 0 NA 0.0616727356447359 41 0.131394732047202 0 NA NA -6.13608522911278 LTS-029 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 0.921 1 NA NA NA NA NA LTS-029 chr7 6845571 6865862 20292 * CCZ1B 0.374888533066547 3 0.0275378527364305 1.15447301078344 39 0.424834528396903 8 5 3 -6.75494187814047 LTS-029 chr7 6865863 6865910 48 * CCZ1B NA 0 NA 0.72 1 NA NA NA NA NA LTS-029 chr7 6865911 7283569 417659 * c(LOC100131257, CCZ1B, C1GALT1) 0.083 1 NA 0.715754294701655 63 0.251953712659871 4 4 0 -5.79766576097493 LTS-029 chr7 7283570 30876366 23592797 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, THSD7A, DKFZP586I1420, NA NA NA NA NA NA NA NA NA LTS-029 MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, TMEM106B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.0842523801767353 223 0.0384323143031097 0.77019039785408 9783 0.304613760293685 4 4 0 -6.80089949731201 LTS-029 NA NA NA NA LTS-029 chr7 30876367 32110395 1234029 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.06649563734173 16 0.0359351267332304 0.872605856651171 970 0.284710192221563 5 5 0 -6.80044267113611 LTS-029 chr7 32110396 38295885 6185490 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, TBX20, RP9, HERPUD2, SFRP4, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7) 0.0729537724756251 71 0.0335816551913743 0.761719470745531 2477 0.453521868120804 4 4 0 -6.76369210810135 LTS-029 chr7 38295886 38295958 73 * TARP 0.074 1 NA 1.653 1 NA NA NA NA NA LTS-029 chr7 38295959 38398511 102553 * c(TRG-AS1, TARP) 0.115596379045551 9 0.127674390540938 1.11265352351114 102 1.0271436074343 11 10 1 -6.75118579637098 LTS-029 chr7 38398512 38402481 3970 * TRG-AS1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-029 chr7 38402482 43846932 5444451 * c(MIR3943, TRG-AS1, LOC100506895, POU6F2-AS1, POU6F2, MPLKIP, HECW1, VPS41, AMPH, GLI3, INHBA-AS1, FAM183BP, LINC00265, INHBA, COA1, PSMA2, YAE1D1, RALA, BLVRA, LOC646999, MRPL32, C7orf25, SUGCT, CDK13, STK17A) 0.0722614505963211 51 0.0349676937735839 0.773805921270389 1938 0.483497116161829 4 4 0 -6.75312381797869 LTS-029 chr7 43846933 43906071 59139 * BLVRA NA 0 NA 1.091 1 NA NA NA NA NA LTS-029 chr7 43906072 43920963 14892 * c(URGCP-MRPS24, URGCP, MRPS24) 0.061749612431556 4 0.00787400787401181 1.09993925624469 101 0.255150572900562 5 5 0 -6.81445973868513 LTS-029 chr7 43920964 43921175 212 * c(URGCP-MRPS24, URGCP) NA 0 NA 0.848 1 NA NA NA NA NA LTS-029 chr7 43921176 57233554 13312379 * c(DDC-AS1, LOC100130849, C7orf72, EGFR-AS1, URGCP-MRPS24, MIR4649, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, C7orf57, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, POLM, POM121L12, VSTM2A-OT1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HPVC1, HUS1, SEPT14, IGFBP1, IGFBP3, ZNF713, FKBP9P1, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, NA NA NA NA NA NA NA NA NA LTS-029 OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, LANCL2, PSPH, PURB, MYL7, FIGNL1, MYO1G, SEPT7P2, GUSBP10, TNS3, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CCT6A, ZNF479, TBRG4, H2AFV) 0.0862771860476069 185 0.0410111238528155 0.778060644922913 6814 0.278330877635425 4 4 0 -6.76370121463612 LTS-029 NA NA NA NA LTS-029 chr7 57233555 57533232 299678 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 0.780423864998769 97 0.309288703903882 4 NA NA -5.76446779795146 LTS-029 chr7 62758725 63023528 264804 * ZNF733P 0.412 1 NA 1.29969216648037 7 0.622478762307446 7 7 0 -5.76449188251454 LTS-029 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.329102260146582 18 0.10768102253591 0.990330354611027 611 0.377260395496313 6 4 2 -6.85047649020623 LTS-029 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.734 1 NA NA NA NA NA LTS-029 chr7 64643340 65084068 440729 * ZNF92 0.341507367978273 3 0.0571051661410769 0.606169897745188 85 0.199363639574306 3 2 1 -6.82085368812306 LTS-029 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 0.991 1 NA NA NA NA NA LTS-029 chr7 65150661 71488825 6338165 * c(MIR3914-1, MIR3914-2, MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, CALN1, TPST1) 0.268076185890139 35 0.163001288854006 1.12088806599331 1421 0.413900216963751 6 5 1 -6.82636272995676 LTS-029 chr7 71488826 77469643 5980818 * c(POM121C, PMS2P9, LOC100133091, MIR4284, APTR, MIR4651, MIR4650-1, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, TBL2, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, MLXIPL, STYXL1, PMS2P5, PMS2P3, GSAP, LOC541473, NA NA NA NA NA NA NA NA NA LTS-029 STAG3L1, POR, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1B, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.335538531016163 78 0.110021071605108 1.04064201015911 4250 0.305348671535972 6 4 2 -6.92495837474244 LTS-029 NA NA NA NA LTS-029 chr7 77469644 77483938 14295 * PHTF2 NA 0 NA 1.156 1 NA NA NA NA NA LTS-029 chr7 77483939 90895988 13412050 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, LOC101409256, SEMA3A, SEMA3C, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, SEMA3D, STEAP2, STEAP1, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, PHTF2, SRI, CACNA2D1, TMEM243, STEAP4, CFAP69, FZD1, GTPBP10, CLDN12, CD36, SEMA3E, MAGI2, DMTF1) 0.33281838300463 85 0.0896520460209487 1.15141004500681 4864 0.345561950848558 6 4 2 -6.81965064976007 LTS-029 chr7 90895989 93625700 2729712 * c(MIR4652, AKAP9, CDK6, BET1, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, FZD1, RBM48, NA, KRIT1) 0.315744956332671 49 0.115076058107931 1.03479712348975 2362 0.288887601776302 6 4 2 -6.89453029027262 LTS-029 chr7 93625701 93628493 2793 * BET1 NA 0 NA 1.367 1 NA NA NA NA NA LTS-029 chr7 93628494 98574260 4945767 * c(MIR3609, LOC100506136, SLC25A13, BET1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, DLX6-AS1, MGC72080, C7orf76, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, CASD1, TAC1, MIR591, SHFM1, TRRAP, SGCE) 0.327877261051556 63 0.0965525360469724 1.10781854033376 2833 0.296792108766993 6 4 2 -6.76531076403215 LTS-029 chr7 98574261 99816272 1242012 * c(GS1-259H13.2, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, GPC2, ZKSCAN5, CNPY4, MBLAC1, PTCD1, ZNF789, GJC3, GATS, LAMTOR4, KPNA7, MIR106B, MIR25, MIR93, MCM7, C7orf43, AZGP1, SMURF1, AZGP1P1, CYP3A43, TAF6, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.350435051241556 53 0.0837570524292734 1.01697354474297 2943 0.263828072265861 6 4 2 -6.82394405692683 LTS-029 chr7 99816273 100033933 217661 * c(PPP1R35, PILRB, PILRA, GATS, SPDYE3, PMS2P1, ZCWPW1, MEPCE, PVRIG) 0.271578243631572 6 0.148203463747197 1.32650931309193 357 0.30030038780475 8 6 2 -6.7439665633842 LTS-029 chr7 100033934 100488658 454725 * c(PCOLCE-AS1, SAP25, POP7, EPHB4, EPO, PPP1R35, NYAP1, FBXO24, GNB2, AGFG2, C7orf61, UFSP1, LRCH4, ACHE, PCOLCE, ACTL6B, SRRT, SLC12A9, MOSPD3, GIGYF1, TFR2, TRIP6, ZAN, TSC22D4) 0.361684174327285 22 0.0530771104496058 1.07491608524397 1724 0.278908649942689 6 4 2 -6.76835724959327 LTS-029 chr7 100488659 100549499 60841 * ACHE NA 0 NA 1.1458623904292 59 0.264708365932662 6 NA NA -5.76477587179617 LTS-029 chr7 100549500 100549516 17 * character(0) NA 0 NA 2.655 1 NA NA NA NA NA LTS-029 chr7 100549517 100549592 76 * character(0) 0.297 1 NA 2.52854494643533 3 0.122075113488923 15 15 0 -5.76441288599767 LTS-029 chr7 100549593 100550490 898 * character(0) 0.357553026288987 32 0.110054953282147 2.37886622507748 53 1.12359008990406 17 11 6 -6.7330950988483 LTS-029 chr7 100550491 100550504 14 * character(0) NA 0 NA 1.417 1 NA NA NA NA NA LTS-029 chr7 100550505 100551035 531 * character(0) 0.28986206336746 6 0.0668690262129386 0.540766341659315 39 0.279098418350062 4 3 1 -6.73370466345547 LTS-029 chr7 100551036 100551065 30 * character(0) 0.291 1 NA 2.145 1 NA NA NA NA NA LTS-029 chr7 100551066 100552788 1723 * character(0) 0.343045414156979 61 0.077921478621758 2.19372040663551 97 1.1254521406232 12 8 4 -6.73323724379685 LTS-029 chr7 100552789 100552794 6 * character(0) NA 0 NA 1.289 1 NA NA NA NA NA LTS-029 chr7 100552795 100679290 126496 * c(MUC12, MUC17) 0.359856415283793 51 0.0956501099289058 1.34124108388243 324 0.949687176601923 6 4 2 -6.7426294351152 LTS-029 chr7 100679291 100679406 116 * MUC17 NA 0 NA 0.723 1 NA NA NA NA NA LTS-029 chr7 100679407 100695138 15732 * MUC17 0.406778669275685 6 0.0303951750557003 1.09921996847394 156 0.348753024954937 7 4 3 -6.7524890904046 LTS-029 chr7 100695139 100701610 6472 * MUC17 0.371 1 NA 1.12473695622097 27 0.208341312667705 6 6 0 -5.76441570096604 LTS-029 chr7 100701611 131084187 30382577 * c(RPL19P12, LOC100130705, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SMKR1, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4653, MIR4467, LOC100630923, MIR5090, RNA5SP244, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, TSGA13, AP1S1, CPA1, CPA2, COL26A1, KLF14, SSMEM1, ASZ1, MUC17, ASB15, CUX1, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, NA NA NA NA NA NA NA NA NA LTS-029 SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLDN15, POLR2J2, POT1, HYALP1, TES, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, TPI1P2, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, MOGAT3, FAM71F2, IFRD1, DPY19L2P2, IMPDH1, IRF5, KCND2, NAT16, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, ARF5, FEZF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, EIF3IP1, LMOD2, MIR335, NDUFA5, NRCAM, NRF1, ORC5, SERPINE1, PNPLA8, PAX4, TAS2R16, FIS1, CPA4, WNT16, ZC3HC1, LSM8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, PPP1R3A, RBM28, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, STRIP2, PTPRZ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, CCDC136, IFT22, SLC13A1, SMO, SPAM1, SRPK2, SYPL1, MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, UBE2H, VGF, WNT2, GCC1, PRKRIP1, ST7, CBLL1, CPED1, ORAI2, CALU, TRIM56, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, TMEM209, CAV1, CAV2, WASL, PLOD3, ATP6V1F, MYL10, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, CEP41, DOCK4) 0.340174947623107 235 0.087408870686379 1.07932634840235 15902 0.3076499651603 6 4 2 -6.94674687855956 LTS-029 NA NA NA NA LTS-029 chr7 131084188 131096039 11852 * MKLN1 NA 0 NA 1.35 1 NA NA NA NA NA LTS-029 chr7 131096040 131190696 94657 * c(MKLN1, PODXL) 0.309818869181553 3 0.0494098505698341 1.39250248796104 249 0.342761590046332 7 5 2 -6.74008975723996 LTS-029 chr7 131190697 131191013 317 * PODXL 0.237 1 NA 1.22517896229511 5 0.46790522544635 7 7 0 -5.76441188214555 LTS-029 chr7 131191014 141755481 10564468 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, FLJ40288, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, TMEM140, AGK, ZC3HAV1, AKR1B10, NA NA NA NA NA NA NA NA NA LTS-029 KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, EXOC4, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, MGAM, ADCK2, PLXNA4, DGKI, ZC3HAV1L) 0.257751946503428 169 0.0701378638773772 1.38748629741596 6959 0.521495403822809 8 6 2 -6.79598233565479 LTS-029 NA NA NA NA LTS-029 chr7 141755482 141791884 36403 * MGAM 0.34924754177133 2 0.123743686707646 1.80858435474967 127 0.795457843777624 9 6 3 -6.73439723351756 LTS-029 chr7 141791885 141792368 484 * MGAM NA 0 NA 1.506 1 NA NA NA NA NA LTS-029 chr7 141792369 143175899 1383531 * c(MOXD2P, MTRNR2L6, CLCN1, OR9A2, C7orf34, TMEM139, PRSS58, PRSS3P2, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, PRSS1, NA, ZYX, CASP2, MGAM, OR6W1P, MGAM2, FAM131B) 0.278983078542241 63 0.0946307995488059 1.45601311892 2144 0.606170950784024 8 6 2 -6.73714373410897 LTS-029 chr7 143175900 143556264 380365 * c(LOC154761, EPHA1-AS1, TCAF2, CTAGE6, CTAGE15, TCAF1) NA 0 NA 2.36169779037818 169 2.11951151855216 14 NA NA -5.76446481170914 LTS-029 chr7 143556265 143573043 16779 * TCAF1 NA 0 NA 0.824 1 NA NA NA NA NA LTS-029 chr7 143573044 143840031 266988 * c(OR2A14, OR6B1, OR2F2, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.293710077675907 17 0.0281714811989213 1.45543881335189 200 0.404225502982316 11 8 3 -6.847741184708 LTS-029 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.751 1 NA NA NA NA NA LTS-029 chr7 143883365 143981556 98192 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.365229855901667 2 0.173241161390704 0.839087693990004 83 0.766684220392978 3 2 1 -6.7423605078438 LTS-029 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 0.889 1 NA NA NA NA NA LTS-029 chr7 143982346 144074420 92075 * c(ARHGEF34P, ARHGEF5) 0.407 1 NA 1.08525481149186 76 0.519073901881067 6 6 0 -5.76456911309684 LTS-029 chr7 144074421 144075785 1365 * ARHGEF5 NA 0 NA 2.444 1 NA NA NA NA NA LTS-029 chr7 144075786 150839189 6763404 * c(ZNF783, MIR548I4, MIR548F4, GIMAP1-GIMAP5, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, GIMAP8, ZNF425, LOC155060, ZNF746, ATP6V0E2, GIMAP7, ZNF467, GIMAP1, C7orf33, EZH2, SSPO, AOC1, CNTNAP2, GIMAP2, TPK1, ZNF777, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, GIMAP4, GIMAP5, TMEM176A, ZNF398, RARRES2, ZNF862, SLC4A2, ACTR3C, LRRC61, LOC728743, NA NA NA NA NA NA NA NA NA LTS-029 ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.267522244731668 125 0.0892065764970419 1.40855500669822 4728 0.587945138647838 8 6 2 -6.7425823963126 LTS-029 NA NA NA NA LTS-029 chr7 150839190 150910375 71186 * c(ABCF2, AGAP3, ASB10, GBX1) 0.338507725109061 5 0.0640897807766574 1.73149719846521 153 0.343543031260256 9 6 3 -6.73995983271196 LTS-029 chr7 150910376 150912750 2375 * ABCF2 0.438 1 NA 1.47514357763814 31 0.52993222126965 8 8 0 -5.76441201129439 LTS-029 chr7 150912751 151504719 591969 * c(WDR86-AS1, MIR3907, ABCF2, CRYGN, WDR86, PRKAG2, NUB1, CHPF2, RHEB, SMARCD3, MIR671) 0.423831726594357 22 0.0367842957739361 1.72614781328309 668 0.453441138794503 10 5 5 -6.73960827105428 LTS-029 chr7 151504720 151573731 69012 * PRKAG2 0.391 1 NA 1.42425662101046 9 0.275495815656871 8 8 0 -5.76454753678368 LTS-029 chr7 151573732 151680072 106341 * c(PRKAG2-AS1, GALNTL5, PRKAG2) 0.26 1 NA 1.49883596230262 23 0.460729229510025 8 8 0 -5.76478187474077 LTS-029 chr7 151680073 156431451 4751379 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, C7orf13, RBM33, GALNTL5, DPP6, EN2, PAXIP1-AS1, FABP5P3, PAXIP1, CNPY1, LOC285889, HTR5A, INSIG1, ACTR3B, KMT2C, GALNT11, LINC00244, SHH, XRCC2) 0.253376547692074 47 0.0866433031436849 1.40650480333595 2175 0.395099137513183 8 6 2 -6.77309649621241 LTS-029 chr7 156431452 158902567 2471116 * c(DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.212514896386199 67 0.0607544977796071 1.65956017367202 1753 0.835675639009915 10 8 2 -6.75438811180853 LTS-029 chr7 158902568 159025951 123384 * VIPR2 NA 0 NA 1.62881731209096 33 0.293833228054778 9 NA NA -5.76449587486085 LTS-029 chr8 182757 250515 67759 * ZNF596 0.464 1 NA 0.70493391926834 71 0.122759025206368 4 4 0 -5.79529455562098 LTS-029 chr8 250516 7272582 7022067 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.444064285239843 109 0.0598018517095408 0.809819647371421 2268 0.245744790561831 4 2 2 -6.89328982332365 LTS-029 chr8 7272583 7694119 421537 * c(DEFB4B, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B) 0.246434006176086 4 0.187120950189977 0.474611609685461 81 0.313123026841323 2 2 0 -6.94322046629849 LTS-029 chr8 7694120 7698578 4459 * character(0) NA 0 NA 0.696 1 NA NA NA NA NA LTS-029 chr8 7698579 24188844 16490266 * c(NAT2, LOC100128993, FAM66E, ZNF705B, FAM66D, FAM66A, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, LOC100507156, MIR4660, LZTS1-AS1, LINC00681, SORBS3, NPM2, DLC1, ADAM28, LZTS1, CLDN23, VPS37A, NKX2-6, SGCZ, CTSB, LOC157273, SGK223, PEBP4, LINC00599, TDH, C8orf48, DEFB4A, EGR3, R3HCC1, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, NA NA NA NA NA NA NA NA NA LTS-029 GATA4, FGF20, GFRA2, FAM86B3P, XKR6, LOC286059, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC389641, USP17L8, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PINX1, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, KIAA1456, CCAR2, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, PDLIM2, SFTPC, USP17L3, FAM160B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, POLR3D, STC1, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, BIN3-IT1, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, CHMP7, MFHAS1, RP1L1, ENTPD4, PHYHIP) 0.436589080223702 270 0.0934405436203653 0.786010423081804 9610 1.14415273324027 4 2 2 -6.75088662603608 LTS-029 NA NA NA NA LTS-029 chr8 24188845 24213319 24475 * ADAM28 0 1 NA 0.823591198119976 89 0.302594051680398 4 4 0 -5.76478422156746 LTS-029 chr8 24213320 25224448 1011129 * c(ADAMDEC1, NEFM, NEFL, DOCK5, ADAM7) 0.286145092601412 3 0.251440516491144 0.759836829758692 611 0.238313844029853 4 3 1 -6.74420985399234 LTS-029 chr8 25224449 25281915 57467 * c(GNRH1, PPP2R2A, DOCK5) 0.350522879830991 17 0.0415480763340353 1.11973263008792 279 0.321914133933022 6 4 2 -6.73326758798347 LTS-029 chr8 25281916 27142757 1860842 * c(PNMA2, ADRA1A, CDCA2, DPYSL2, TRIM35, GNRH1, KCTD9, PPP2R2A, EBF2, BNIP3L, STMN4) 0.407747603547454 31 0.153764580565744 0.777428032573274 954 0.325395365396395 4 2 2 -6.73805260011509 LTS-029 chr8 27142758 27277537 134780 * c(PTK2B, TRIM35) 0.466 1 NA 0.810756795919192 119 0.148124517923742 4 4 0 -5.76832271066511 LTS-029 chr8 27277538 33371150 6093613 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, PURG, NRG1, NUGGC, SCARA3, SARAF, PNOC, ELP3, PPP2CB, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, WRN, HMBOX1, FZD3, UBXN8, TTI2, MAK16, FUT10) 0.454528270445612 68 0.0302331443980468 0.749857176866531 3979 0.189702237638054 4 2 2 -7.61539286733246 LTS-029 chr8 33371151 35542195 2171045 * c(UNC5D, DUSP26, RNF122) 0 1 NA 0.809899955269549 137 0.224799444512943 4 4 0 -5.78993478476045 LTS-029 chr8 35542196 37719781 2177586 * c(ERLIN2, PROSC, UNC5D, KCNU1, ADGRA2, BRF2, LOC728024, ZNF703, RAB11FIP1) 0.240478305784621 10 0.228225546335199 0.785119782321183 1110 0.230503282806895 4 3 1 -6.75999051056618 LTS-029 chr8 37719782 37728017 8236 * RAB11FIP1 0.488 1 NA 0.654489829633032 23 0.304332250307251 3 3 0 -5.76457414231499 LTS-029 chr8 37728018 41480920 3752903 * c(LOC100130964, GOT1L1, GPAT4, LETM2, ADRB3, ADAM3A, IDO2, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM2, ADAM5, LSM1, RNF5P1, IDO1, C8orf86, GOLGA7, WHSC1L1, C8orf4, PLEKHA2, SFRP1, STAR, TACC1, ZMAT4, RAB11FIP1, TM2D2, GINS4, PLPP5, ADAM18, ADAM9, ASH2L, BAG4) 0.403001305793555 32 0.157221592131164 0.754400502359322 2845 0.253054093459513 4 2 2 -6.79465287247007 LTS-029 chr8 41480921 42050811 569891 * c(AP3M2, GPAT4, NKX6-3, ANK1, PLAT, MIR486-1, KAT6A) 0.316581740218269 19 0.137084662447564 1.07309797868886 916 0.278995156377449 6 4 2 -6.77456348249174 LTS-029 chr8 42050812 42128805 77994 * PLAT NA 0 NA 1.486 1 NA NA NA NA NA LTS-029 chr8 42128806 42262501 133696 * c(DKK4, IKBKB, POLB, VDAC3) 0.322 1 NA 1.32415042220769 306 0.249950944828239 7 7 0 -5.76578809168821 LTS-029 chr8 42262502 42262782 281 * VDAC3 NA 0 NA 0.975 1 NA NA NA NA NA LTS-029 chr8 42262783 42565713 302931 * c(CHRNB3, SMIM19, SLC20A2, VDAC3) NA 0 NA 0.981627534232726 149 0.176870604608377 5 NA NA -5.77050457572721 LTS-029 chr8 42565714 42585711 19998 * CHRNB3 NA 0 NA 1.352 1 NA NA NA NA NA LTS-029 chr8 42585712 42978463 392752 * c(MIR4469, CHRNB3, FNTA, THAP1, RNF170, POMK, HOOK3, CHRNA6) 0.462118341229196 3 0.0246846781087648 1.35610096904151 523 0.448996311298857 8 4 4 -8.09075634988042 LTS-029 chr8 42978464 43212050 233587 * c(HGSNAT, POTEA) NA 0 NA 1.5170908133654 205 0.380370209241512 8 NA NA -5.76657424768852 LTS-029 chr8 47752736 47754959 2224 * LINC00293 0 1 NA 1.70243932860174 11 3.03989618243781 10 10 0 -5.76441040813218 LTS-029 chr8 47754960 48975705 1220746 * c(LOC100287846, CEBPD, SPIDR, MCM4, LINC00293, PRKDC, UBE2V2) 0 3 0 1.35975121364165 927 0.347728609207329 0 0 0 -Inf LTS-029 chr8 48975706 51621623 2645918 * c(C8orf22, SNTG1, SNAI2, EFCAB1) 0.429041410767532 3 0.0112398102000582 1.74374138255409 250 0.638816048765717 10 5 5 -7.06578125639778 LTS-029 chr8 51621624 51664549 42926 * SNTG1 NA 0 NA 1.291 1 NA NA NA NA NA LTS-029 chr8 51664550 53126881 1462332 * c(PCMTD1, PXDNL, SNTG1, ST18) 0.380007346190537 15 0.0889131732700638 1.45385465779526 547 0.422210984455237 8 5 3 -6.73314429309442 LTS-029 chr8 53126882 53447080 320199 * c(FAM150A, ST18) NA 0 NA 0.869 1 NA NA NA NA NA LTS-029 chr8 53447081 53627084 180004 * c(FAM150A, RB1CC1) 0.0806222864504441 2 0.000707106781186548 0.753885959528822 211 0.19557665073981 4 4 0 -10.3379472832329 LTS-029 chr8 53627085 53850999 223915 * character(0) NA 0 NA 1.208 1 NA NA NA NA NA LTS-029 chr8 53851000 53853735 2736 * NPBWR1 0.444489325735488 4 0.0424656724111762 1.5361377360066 59 0.571221156969428 8 4 4 -6.91935307956875 LTS-029 chr8 53853736 54138273 284538 * character(0) NA 0 NA 0.944 1 NA NA NA NA NA LTS-029 chr8 54138274 68334613 14196340 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, ARFGEF1, COPS5, XKR4, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, OPRK1, PDE7A, ATP6V1H, PENK, NA NA NA NA NA NA NA NA NA LTS-029 PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, CPA6, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, CSPP1, VCPIP1, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.318115803777135 68 0.110585297347633 1.07311321623158 5614 0.350337413631207 6 4 2 -6.88583345929898 LTS-029 NA NA NA NA LTS-029 chr8 68334614 68334687 74 * CPA6 NA 0 NA 1.242 1 NA NA NA NA NA LTS-029 chr8 68334688 69703102 1368415 * c(C8orf34, C8orf34-AS1, CPA6, PREX2) 0.354402560801382 34 0.0766144362115074 1.21774024764013 700 0.45263263542294 6 4 2 -6.76570025965541 LTS-029 chr8 69703103 73993200 4290098 * c(MSC-AS1, LINC01592, NCOA2, C8orf34, SBSPON, EYA1, SULF1, TRAM1, LACTB2-AS1, XKR9, LOC392232, LACTB2, PRDM14, TERF1, SLCO5A1, TRPA1, MSC, KCNB2) 0.324817014240553 27 0.090436752859699 1.09571288541323 1488 0.312285652109306 6 4 2 -6.78690348113142 LTS-029 chr8 73993201 74005131 11931 * SBSPON 0.247 1 NA 1.40588480663853 7 0.302753396426232 8 8 0 -5.76447514774774 LTS-029 chr8 74005132 77764207 3759076 * c(STAU2-AS1, C8orf89, ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, RDH10, SBSPON, LY96, STAU2, HNF4G, MIR2052HG, PI15, GDAP1, TMEM70, UBE2W, JPH1, RPL7, TCEB1, ZFHX4, CRISPLD1) 0.210274719501976 9 0.168558677551106 1.09714883243178 1373 0.88376679083041 6 5 1 -6.73484507855178 LTS-029 chr8 77764208 77764484 277 * ZFHX4 0.276 1 NA 1.21958835398857 7 0.736312142660008 7 7 0 -5.76441088290001 LTS-029 chr8 77764485 82715440 4950956 * c(MIR5708, LOC101241902, STMN2, FABP4, FABP5, HEY1, MRPS28, SLC10A5, IL7, IMPA1, ZC2HC1A, PMP2, PKIA, PAG1, PEX2, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, ZFAND1, ZFHX4, CHMP4C) 0.350395053047902 34 0.0453250097213322 1.06815324626863 1871 0.259757598160866 6 4 2 -6.81619832396823 LTS-029 chr8 82715441 82727511 12071 * SNX16 NA 0 NA 1.184 1 NA NA NA NA NA LTS-029 chr8 82727512 90803168 8075657 * c(REXO1L2P, WWP1, DCAF4L2, RALYL, SLC7A13, CNBD1, E2F5, ATP6V0D2, REXO1L1P, CA13, C8orf59, MMP16, RMDN1, CNGB3, SNX16, CA1, CA2, CA3, LRRCC1, PSKH2, RIPK2, CPNE3) 0.343774001825113 22 0.0825853356373737 1.14438534225753 1712 0.299988988338246 6 4 2 -6.77013718367226 LTS-029 chr8 90803169 90803201 33 * RIPK2 NA 0 NA 1.484 1 NA NA NA NA NA LTS-029 chr8 90803202 91636668 833467 * c(LINC00534, DECR1, TMEM64, NBN, OSGIN2, CALB1, RIPK2) 0.329295707487459 2 0.00989949493661167 1.36455069804322 432 0.268166248595121 9 6 3 -8.07016711003137 LTS-029 chr8 91636669 91953138 316470 * c(TMEM64, NECAB1) 0.289 1 NA 1.4354371826759 113 0.278685345803948 8 8 0 -5.76456859235177 LTS-029 chr8 91953139 100883889 8930751 * c(MIR875, C8orf88, LRRC69, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, FSBP, CDH17, RIDA, CPQ, POP1, SLC26A7, OSR2, FAM92A1, NDUFAF6, C8orf37, VPS13B, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, TRIQK, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, FLJ46284, MTERF3, OTUD6B, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, RPL30, LINC01298, SDC2, NECAB1, LINC00535, STK3, NA NA NA NA NA NA NA NA NA LTS-029 MIR599, UQCRB, PLEKHF2, NIPAL2, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.247498651319904 81 0.0850001216411621 1.40331216160554 4660 0.375325657665768 8 6 2 -6.81503051986247 LTS-029 NA NA NA NA LTS-029 chr8 100883890 100887625 3736 * VPS13B NA 0 NA 1.303 1 NA NA NA NA NA LTS-029 chr8 100887626 103662376 2774751 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.249334508868636 12 0.120177992993726 1.27450330419761 1629 0.312754958835234 7 5 2 -6.8637116726005 LTS-029 chr8 103662377 106816351 3153975 * c(MIR3151, BAALC-AS1, CTHRC1, BAALC-AS2, DPYS, ZFPM2, DCAF13, LRP12, AZIN1, ATP6V1C1, KLF10, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.254402129877248 36 0.0867477047864339 1.42927300255976 1426 0.941423887022325 8 6 2 -6.75584206435423 LTS-029 chr8 106816352 109796202 2979851 * c(ABRA, TMEM74, ZFPM2, ANGPT1, RSPO2, EIF3E, OXR1, EMC2) 0.269766083573569 4 0.253223715319083 1.76087294403092 598 0.506627645327425 10 7 3 -6.75143096120548 LTS-029 chr8 109796203 110253879 457677 * c(TMEM74, TRHR, NUDCD1) 0.399 1 NA 1.96806605914832 69 0.283059050831199 11 11 0 -5.76493975750662 LTS-029 chr8 110253880 120743636 10489757 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, SLC30A8, EXT1, KCNV1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TAF2, TRPS1, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1) 0.34811259501468 42 0.134807506761346 1.79622793785811 2742 0.574319181410797 10 7 3 -6.77457339243747 LTS-029 chr8 120743637 120942213 198577 * c(DEPTOR, TAF2, DSCC1) NA 0 NA 1.41269081454461 229 0.299988365539613 8 NA NA -5.76517414958955 LTS-029 chr8 120942214 120977400 35187 * DEPTOR NA 0 NA 1.834 1 NA NA NA NA NA LTS-029 chr8 120977401 124221044 3243644 * c(FAM83A-AS1, ZHX2, MTBP, MRPL13, HAS2, HAS2-AS1, DEPTOR, SNTB1, COL14A1, DERL1, FAM83A, TBC1D31) 0.370260341400061 17 0.140265845282953 1.70411554149488 1102 0.427260229600451 10 6 4 -6.77225780742523 LTS-029 chr8 124221045 124333475 112431 * c(ZHX1-C8orf76, MIR4663, ZHX1, ATAD2, C8orf76, FAM83A) NA 0 NA 1.62874369557849 172 0.270993705586112 9 NA NA -5.76450115944368 LTS-029 chr8 124333476 124335130 1655 * ATAD2 NA 0 NA 1.055 1 NA NA NA NA NA LTS-029 chr8 124335131 124440174 105044 * c(ATAD2, WDYHV1) 0.48 1 NA 1.28244134513672 139 0.270505914531798 7 7 0 -5.76441062943528 LTS-029 chr8 124440175 126370054 1929880 * c(RNF139, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, NSMCE2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, TATDN1, MTSS1, KIAA0196) 0.442097229554307 32 0.116639436146254 1.33579691238616 1518 0.370790226395555 7 4 3 -6.7872077504008 LTS-029 chr8 126370055 126378977 8923 * NSMCE2 NA 0 NA 1.954 1 NA NA NA NA NA LTS-029 chr8 126378978 133107845 6728868 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, HHLA1, TRIB1, ADCY8, FAM84B, EFR3A, NSMCE2, ASAP1-IT1, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977, OC90) 0.400757422641836 29 0.0918467346185945 1.56385027518192 1232 0.464348622855185 9 5 4 -6.76858831654093 LTS-029 chr8 133107846 135817198 2709353 * c(HHLA1, NDRG1, TMEM71, LRRC6, KCNQ3, MIR30B, MIR30D, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1, HPYR1) 0.445721550145096 48 0.0953172544157756 1.36177791807878 1547 0.382566595296513 8 4 4 -6.81558615869538 LTS-029 chr8 135817199 136246458 429260 * LINC01591 NA 0 NA 1.543 1 NA NA NA NA NA LTS-029 chr8 136246459 136561153 314695 * c(KHDRBS3, LINC01591) 0.498 1 NA 1.59052356563605 53 0.450743846590808 9 9 0 -5.76458688668488 LTS-029 chr8 136561154 139142545 2581392 * c(KHDRBS3, FAM135B) 0 1 NA 1.64481261386715 55 0.408337046365308 9 9 0 -5.7680393402668 LTS-029 chr8 139142546 140945205 1802660 * c(COL22A1, FAM135B, KCNK9, TRAPPC9) 0.357858047928094 15 0.18928990112171 1.57428380110979 661 0.55805763380822 9 6 3 -6.73806143797462 LTS-029 chr8 140945206 141460918 515713 * TRAPPC9 0.391 1 NA 1.40726287463116 117 0.447744574779005 8 8 0 -5.76560907359549 LTS-029 chr8 141460919 141461074 156 * TRAPPC9 0.435 1 NA 1.32584697333917 5 0.340562475913011 7 7 0 -5.76441106397388 LTS-029 chr8 141461075 142266910 805836 * c(DENND3, AGO2, CHRAC1, SLC45A4, PTK2, TRAPPC9) 0.465177135535737 38 0.0303381136193417 1.33874249218168 931 0.311127976332965 8 4 4 -7.84582492861621 LTS-029 chr8 142266911 142366577 99667 * LINC01300 NA 0 NA 1.786 1 NA NA NA NA NA LTS-029 chr8 142366578 143998677 1632100 * c(LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, MROH5, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, PSCA, LY6D, JRK) 0.465736755545356 47 0.0284081687513272 1.54149901614653 1221 0.407062582771179 8 4 4 -7.98926653998155 LTS-029 chr8 143998678 143999073 396 * CYP11B2 NA 0 NA 1.168 1 NA NA NA NA NA LTS-029 chr8 143999074 144623574 624501 * c(CDC42P3, LOC100133669, RHPN1, TOP1MT, CYP11B2, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6E, LY6H, RHPN1-AS1, ZNF696) 0.463786308244923 42 0.0754125779334529 1.37025132982406 726 0.310147818540599 8 4 4 -6.93642486965273 LTS-029 chr8 144623575 144644592 21018 * c(ZC3H3, GSDMD) 0 1 NA 1.404028339157 77 0.309235404185291 8 8 0 -5.76453020086483 LTS-029 chr8 144644593 146280802 1636210 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, MFSD3, CYC1, EEF1D, ADCK5, MAPK15, PUF60, BOP1, SCRIB, FBXL6, OPLAH, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, GRINA, CPSF1, HSF1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, C8orf33, MIR661, TSTA3, MROH1, ZNF7, ZNF16, NA NA NA NA NA NA NA NA NA LTS-029 SLC52A2, GSDMD, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.3950937429412 49 0.192843577565247 1.41380844856702 5177 0.336809996784454 8 5 3 -6.74150432196032 LTS-029 NA NA NA NA LTS-029 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.767041733824781 3 0.133945262451993 4 NA NA -5.76441191329575 LTS-029 chr9 14732 116211 101480 * c(WASH1, FAM138C) 0.283 1 NA 1.26488172579665 3 0.612151397395557 7 7 0 -5.76443771699321 LTS-029 chr9 116212 8449866 8333655 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.330159898478411 99 0.102020743562715 1.05645042543365 4090 0.335177554049557 6 4 2 -6.88548018023479 LTS-029 chr9 8449867 8451735 1869 * PTPRD NA 0 NA 1.44 1 NA NA NA NA NA LTS-029 chr9 8451736 14617558 6165823 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.373239241309664 4 0.0481421506236132 1.18063943199239 842 0.301827087062126 6 4 2 -6.99957579141288 LTS-029 chr9 14617559 34725213 20107655 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, RRAGA, CCL27, PSIP1, PTENP1, DCTN3, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, FAM219A, DDX58, SLC24A2, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, TUSC1, ANXA2P2, NUDT2, DNAJA1, IFNE, ZDHHC21, NA NA NA NA NA NA NA NA NA LTS-029 ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, ENHO, LOC389705, HACD4, LINC01242, TMEM215, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, UBAP1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, KLHL9, PRSS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 IFNK, BAG1, MIR491, KIAA1161, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, LRRC19, NOL6, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, C9orf24, ADAMTSL1, CER1, PLAA) 0.342658538888772 172 0.0782958631095064 1.07828153410193 8229 0.283672304064877 6 4 2 -6.90920102012029 LTS-029 NA NA NA NA LTS-029 chr9 34725214 34726289 1076 * FAM205A NA 0 NA 0.386395506862366 52 0.36303849273824 2 NA NA -5.76453603197584 LTS-029 chr9 34726290 43861081 9134792 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, CREB3, UNC13B, CLTA, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, FAM205A, ZNF658, SPAG8, FBXO10, SIT1, LOC286297, STOML2, IGFBPL1, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, TOMM5, FAM74A1, ZNF658B, AQP7P3, NPR2, PAX5, EXOSC3, TMEM8B, OR2S2, GBA2, RMRP, NA, NA, LOC642929, NA NA NA NA NA NA NA NA NA LTS-029 LINC01189, POLR1E, SHB, HRCT1, NA, FGF7P3, MSMP, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.349961490899579 110 0.0761461989838171 1.07948609231113 5105 0.310379189590038 6 4 2 -6.79501031665698 LTS-029 NA NA NA NA LTS-029 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.05348382414762 8 0.389380001687665 6 NA NA -5.76853202809639 LTS-029 chr9 65602571 66457127 854557 * LOC286297 0.453 1 NA 1.37546173879507 4 0.387162325990878 8 8 0 -5.77320058214737 LTS-029 chr9 66457128 99518525 33061398 * c(SNORA84, LOC100128076, LOC100128361, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, FAM27B, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR3074, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MIR4670, BANCR, SEMA4D, SPTLC1, GADD45G, SPIN1, SLC35D2, FAM122A, CKS2, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, TRPM6, CTSL, CTSLP8, NXNL2, NA NA NA NA NA NA NA NA NA LTS-029 RASEF, MIRLET7DHG, FAM120AOS, LINC00475, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF169, ECM2, S1PR3, AAED1, ZNF367, SUSD3, ALDH1A1, FANCC, FBP1, ZNF510, HABP4, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, CDK20, TMEM2, FXN, MAMDC2, FRMD3, GAS1, GCNT1, OSTF1, GNAQ, C9orf47, SPATA31E1, LOC286238, LOC286297, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, LINC01501, SPATA31D5P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 AQP7P1, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441455, PTGER4P2-CDK2AP2P2, FOXB2, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, PGM5, PHF2, SHC3, NUTM2F, DIRAS2, ASPN, AUH, NMRK1, NOL8, C9orf40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RFK, KIF27, PRKACG, BARX1, PGM5-AS1, PTCH1, PGM5P2, NAA35, RORB, SLC28A3, FRG1JP, CBWD6, SPATA31C2, IPPK, WNK2, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TLE1, TLE4, ANKRD20A4, ZFAND5, SECISBP2, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, ZNF484, PIP5K1B, CEP78, C9orf64, CARD19, MFSD14B, C9orf3, CDC14B, FBP2, FGD3, FAM189A2, TJP2, GDA, GNA14) 0.337540893849723 261 0.0946400320248062 1.07294685494158 13925 0.673034283171121 6 4 2 -6.80964435290102 LTS-029 NA NA NA NA LTS-029 chr9 99518526 100053654 535129 * c(LOC100132781, LOC100499484, CTSV, ZNF782, ZNF510, GAS2L1P2, LOC441454, NUTM2G, LOC100499484-C9ORF174, MFSD14C) 0.354793361741932 6 0.176999905838016 0.771359837772016 430 0.244939619256192 4 2 2 -6.81606891069365 LTS-029 chr9 100053655 100074446 20792 * c(CCDC180, LOC100499484, LOC100499484-C9ORF174) 0.472 1 NA 0.777873375944537 51 0.186026262113924 4 4 0 -5.76443812739235 LTS-029 chr9 100074447 106900480 6826034 * c(CCDC180, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, GRIN3A, COL15A1, CYLC2, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.428922688838593 105 0.107348652297936 0.764186280212027 3932 0.234326667937992 4 2 2 -6.78894036892971 LTS-029 chr9 106900481 106901418 938 * SMC2 NA 0 NA 0.922 1 NA NA NA NA NA LTS-029 chr9 106901419 107457725 556307 * c(SMC2, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.442285601800116 31 0.0509538479769282 0.944336621406916 261 0.443851522477174 6 3 3 -6.88804998987362 LTS-029 chr9 107457726 107457740 15 * OR13D1 NA 0 NA 0.805 1 NA NA NA NA NA LTS-029 chr9 107457741 114090392 6632652 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, ABCA1, LPAR1, FKTN, SLC44A1, TMEM245, FRRS1L, TXNDC8, NIPSNAP3A, OR2K2, OR13D1, NA, C9orf152, MIR32, PALM2-AKAP2, MUSK, EPB41L4B, FAM206A, TMEM38B, NIPSNAP3B, PTPN3, ZNF462, RAD23B, TAL2, TXN, SVEP1, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.441068526863403 67 0.088421603234667 0.78618912686442 3861 0.676058593088063 4 2 2 -6.76549535882415 LTS-029 chr9 114090393 114691960 601568 * c(ZNF483, C9orf84, PTGR1, KIAA0368, OR2K2, GNG10, DNAJC25, DNAJC25-GNG10, LRRC37A5P, UGCG) 0.440521514389118 25 0.0532405547178715 0.714071318725764 778 0.172489827405579 4 2 2 -6.92327339960383 LTS-029 chr9 114691961 114693484 1524 * UGCG NA 0 NA 1.213 1 NA NA NA NA NA LTS-029 chr9 114693485 114840889 147405 * c(MIR3134, MIR4668, SUSD1, UGCG) 0.384620853575015 2 0.0162634559672906 1.04810441771439 112 0.232122102626334 8 5 3 -6.95293010908763 LTS-029 chr9 114840890 115421605 580716 * c(MIR3134, KIAA1958, SUSD1, HSDL2, PTBP3) 0.48444543145496 2 0.0226274169979695 0.721720404228966 432 0.170693576218543 4 2 2 -9.68178202888033 LTS-029 chr9 115421606 115423013 1408 * KIAA1958 0 1 NA 0.861281127340355 27 0.63239312352212 4 4 0 -5.76442840958671 LTS-029 chr9 115423014 116078140 655127 * c(FAM225B, WDR31, SLC31A1, SLC31A2, RNF183, ZNF883, FKBP15, CDC26, FAM225A, SNX30, SLC46A2, INIP, ZFP37, PRPF4) 0.3123303833075 22 0.212723022768069 0.77519379033047 1228 0.347010214261822 4 3 1 -6.74075297479326 LTS-029 chr9 116078141 116078520 380 * WDR31 0.45 1 NA 0.7258184143666 9 0.157546377651507 4 4 0 -5.76446598241077 LTS-029 chr9 116078521 117074810 996290 * c(KIF12, WDR31, ZNF618, ALAD, C9orf43, AMBP, POLE3, BSPRY, RGS3, MIR455, HDHD3, COL27A1) 0.45746895241077 33 0.0270213860308886 0.771216900959146 1210 0.196927757742209 4 2 2 -7.69370056853931 LTS-029 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.218 1 NA NA NA NA NA LTS-029 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.220580047189793 41 0.0817981528206967 1 NA NA -5.79359951878357 LTS-029 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.755 1 NA NA NA NA NA LTS-029 chr9 117092173 123171555 6079383 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.435054580660081 43 0.109326256422234 0.817709292776298 1711 0.229676856047314 4 2 2 -6.85846962374722 LTS-029 chr9 123171556 123171581 26 * CDK5RAP2 0.474 1 NA 0.68 1 NA NA NA NA NA LTS-029 chr9 123171582 132904291 9732710 * c(LOC100129034, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, ZER1, ZBTB6, NEK6, USP20, SLC27A4, CNTRL, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, ASB6, DAB2IP, OR1Q1, TTLL11, TTC16, OLFML2A, DNM1, TOR1A, MEGF9, ENDOG, ENG, AK1, NAIF1, STOM, DOLK, FNBP1, ZBTB43, ANGPTL2, NUP188, FPGS, RABGAP1, NA NA NA NA NA NA NA NA NA LTS-029 NR5A1, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, NTMT1, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, OR1J1, OR1B1, SWI5, C9orf50, PTGES2-AS1, IER5L, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MIR219A2, C9orf106, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, RAB14, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, SH3GLB2, PSMB7, PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, GPR107, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TRAF1, C5, ZNF79, C9orf16, MAPKAP1, PTGES2, MIR600HG, URM1, ARPC5L, GARNL3, ZDHHC12, MIGA2, DPM2, KYAT1, MVB12B, WDR34, LRSAM1, MRRF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RBM18, LHX2, PTGES, RALGPS1) 0.433540741280384 121 0.118689110531159 0.756395981968769 12564 0.232632838862163 4 2 2 -6.88308057174 LTS-029 NA NA NA NA LTS-029 chr9 132904292 133339628 435337 * c(NCS1, ASS1) 0.446814053488164 7 0.0493823758806626 0.868352146325371 444 0.180018536940059 4 2 2 -6.98076564095561 LTS-029 chr9 133339629 133342160 2532 * ASS1 NA 0 NA 0.805 1 NA NA NA NA NA LTS-029 chr9 133342161 136081374 2739214 * c(LOC100272217, LAMC3, CEL, CELP, POMT1, SPACA9, AK8, SETX, EXOSC2, ABL1, GBGT1, SNORD62A, FAM78A, RAPGEF1, OBP2B, QRFP, CFAP77, ASS1, BARHL1, RALGDS, PRDM12, DDX31, TSC1, TTF1, NUP214, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, GTF3C5, GTF3C4, MED27) 0.440789267513998 75 0.103027806969813 0.769216637275061 3716 0.491713167631709 4 2 2 -6.75903264605902 LTS-029 chr9 136081375 136081612 238 * OBP2B NA 0 NA 1.143 1 NA NA NA NA NA LTS-029 chr9 136081613 136185217 103605 * c(ABO, OBP2B) 0.221932923943856 2 0.272943217538007 1.14695408438888 69 0.299984819166913 6 5 1 -6.73630312167716 LTS-029 chr9 136185218 136185221 4 * character(0) NA 0 NA 0.681 1 NA NA NA NA NA LTS-029 chr9 136185222 138684380 2499159 * c(LINC01502, RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, C9orf116, DBH-AS1, C9orf62, DBH, STKLD1, SARDH, FCN1, FCN2, LINC00094, SNORD36C, SNORD36B, SNORD36A, SNORD24, OBP2A, GLT6D1, TMEM8C, LCN9, LCN1, LOC401557, SOHLH1, PAEP, MRPS2, REXO4, KCNT1, RPL7A, RXRA, FAM163B, SURF1, SURF2, SURF4, NA NA NA NA NA NA NA NA NA LTS-029 MED22, SURF6, VAV2, BRD3, ADAMTSL2, PPP1R26) 0.436280590408599 113 0.0849933105124068 0.814174488897692 3020 0.24404383362586 4 2 2 -6.78766426428798 LTS-029 NA NA NA NA LTS-029 chr9 138684381 139946040 1261660 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, MIR4479, UBAC1, AGPAT2, SDCCAG3, NACC2, LCN8, FAM69B, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, LCN12, C9orf142, PHPT1, LCN15, C9orf172, LCNL1, C9orf139, MIR126, LCN10, NOTCH1, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, LHX3, CCDC183, SNHG7, TMEM141, NA NA NA NA NA NA NA NA NA LTS-029 EDF1, C9orf69, CLIC3, ENTPD2, SEC16A) 0.438985246856145 131 0.0940192150623452 0.768155096692211 3718 0.804224006938304 4 2 2 -6.75678436048683 LTS-029 NA NA NA NA LTS-029 chr9 139946041 139996619 50579 * c(MAN1B1-AS1, MAN1B1, SAPCD2, UAP1L1, ENTPD2) 0.411 1 NA 0.733301948778117 239 0.574736985018271 4 4 0 -5.76483264682217 LTS-029 chr9 139996620 139997791 1172 * MAN1B1 0.245225740468419 9 0.117874698067246 1.03102259742426 33 0.39130690117744 9 7 2 -6.73408013628549 LTS-029 chr9 139997792 140003640 5849 * MAN1B1 0.458 1 NA 0.73889448400384 59 0.134436290882535 4 4 0 -5.76511412731153 LTS-029 chr9 140003641 141070283 1066643 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.437365344384819 27 0.0490086334623417 0.768175134720427 2256 0.178212471282527 4 2 2 -6.81281515605773 LTS-029 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.492505074927738 5 0.188111137362996 2 NA NA -5.76457932518336 LTS-029 chr10 94832 875287 780456 * c(MIR5699, ZMYND11, DIP2C, LARP4B, TUBB8, PRR26) 0.402 1 NA 1.08173565732074 606 0.237866098623682 6 6 0 -5.77240116174974 LTS-029 chr10 875288 18060381 17185094 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, C1QL3, NA NA NA NA NA NA NA NA NA LTS-029 LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.334540532479001 221 0.0829243530817029 1.04139489035881 8259 0.348927043116379 6 4 2 -7.13236874524023 LTS-029 NA NA NA NA LTS-029 chr10 18060382 18085856 25475 * c(MRC1, NA, TMEM236) NA 0 NA 0.303 1 NA NA NA NA NA LTS-029 chr10 18085857 18196475 110619 * c(MRC1, NA, TMEM236) NA 0 NA 0.438490495346 83 0.259051494976698 2 NA NA -5.76554761117602 LTS-029 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.155 1 NA NA NA NA NA LTS-029 chr10 18198201 21802596 3604396 * c(NEBL-AS1, SLC39A12-AS1, MIR1915, MIR4675, NEBL, SLC39A12, NSUN6, ARL5B, C10orf113, SKIDA1, CASC10, MRC1, CACNB2, PLXDC2) 0.345282097108934 26 0.0840042581338314 1.15676655301281 1192 0.38815625323565 6 4 2 -6.75320303230161 LTS-029 chr10 21802597 26385578 4582982 * c(GPR158-AS1, LOC100130992, LOC100499489, COMMD3-BMI1, ENKUR, ARMC3, OTUD1, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, SKIDA1, PIP4K2A, MYO3A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, THNSL1, MLLT10, SPAG6) 0.349480620790017 25 0.0554303767501779 1.08023639329088 2074 0.349882596153236 6 4 2 -6.75664391660367 LTS-029 chr10 26385579 26459351 73773 * MYO3A 0 1 NA 1.17836493358522 49 0.349478215285565 6 6 0 -5.76548510117957 LTS-029 chr10 26459352 28906677 2447326 * c(ABI1, MIR5586, YME1L1, MPP7, WAC-AS1, ANKRD26, RAB18, PDSS1, GAD2, MKX, PTCHD3, LINC00202-1, LRRC37A6P, WAC, MYO3A, APBB1IP, ARMC4, LINC00264, LINC00202-2, MASTL, ACBD5) 0.230195107866268 13 0.184492165075807 1.07681418405595 1657 0.40153985698628 6 5 1 -6.75717622218026 LTS-029 chr10 28906678 28966494 59817 * c(BAMBI, WAC) 0.363 1 NA 1.21525735238455 33 0.483541739290791 7 7 0 -5.76484212017965 LTS-029 chr10 28966495 38671982 9705488 * c(MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, BAMBI, ITGB1, KIF5B, PTCHD3P1, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ANKRD30A, ARHGAP12) 0.365089475576794 93 0.0514294612169515 1.04841108581709 3315 0.537180668458461 6 4 2 -6.86379109517401 LTS-029 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 1.03530027811569 9 0.211989845144631 6 NA NA -5.76953847816249 LTS-029 chr10 42379879 46281287 3901409 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.107415642414425 55 0.0588022308837204 0.778153055543959 1801 0.266203489454064 4 4 0 -6.87982991567708 LTS-029 chr10 46281288 46550852 269565 * c(AGAP4, FAM21C, PTPN20, NA) NA 0 NA 1.441 1 NA NA NA NA NA LTS-029 chr10 46550853 46968665 417813 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA, SYT15) 0.147542364714553 4 0.108773081841664 1.15292947091131 88 0.439546904872588 7 6 1 -6.79171335734752 LTS-029 chr10 46968666 46968762 97 * c(PTPN20, GLUD1P7, NA, NA, SYT15) 0.343 1 NA 1.26281461160333 3 0.275729940340181 7 7 0 -5.764410297579 LTS-029 chr10 46968763 47087501 118739 * c(PTPN20, GLUD1P7, NPY4R, NA, NA, SYT15, GPRIN2) 0.357590664201011 21 0.109035599254381 1.27791970100452 106 0.500902680944292 6 4 2 -6.74138277370322 LTS-029 chr10 47087502 47396831 309330 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33) 0.146 1 NA 1.06760920919347 21 0.364319705230238 6 6 0 -5.76714550667923 LTS-029 chr10 47396832 47405723 8892 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 0.900561463023924 3 0.0242487113059643 5 NA NA -5.79054555550467 LTS-029 chr10 47405724 47409859 4136 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 2.496 1 NA NA NA NA NA LTS-029 chr10 47409860 47756145 346286 * c(NA, PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 1.59973848492593 86 0.388944517932951 9 NA NA -5.76449834512872 LTS-029 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.06 1 NA NA NA NA NA LTS-029 chr10 47903105 48032978 129874 * c(PTPN20, GLUD1P7, NA, NA, NA) 0.238 1 NA 0.456164270587135 39 0.268252532238992 2 2 0 -5.76444407475243 LTS-029 chr10 48032979 48033077 99 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.723 1 NA NA NA NA NA LTS-029 chr10 48033078 48438594 405517 * c(ZNF488, CTSLP2, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.0899796913365641 4 0.0270724337041698 0.895945897879826 266 0.376140646960586 4 4 0 -6.87431671107504 LTS-029 chr10 48438595 48438599 5 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.554 1 NA NA NA NA NA LTS-029 chr10 48438600 48739468 300869 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) 0 1 NA 0.366946846275401 39 0.323139109271256 2 2 0 -5.84114760329211 LTS-029 chr10 48739469 48739488 20 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.724 1 NA NA NA NA NA LTS-029 chr10 48739489 51026705 2287217 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.0712087338921089 39 0.0371518022477566 0.794953445598448 1875 0.330859038609601 4 4 0 -6.75637273823961 LTS-029 chr10 51026706 51050191 23486 * c(NA, PARG) NA 0 NA 0.771194205686791 34 0.115212335940824 4 NA NA -5.76473283605304 LTS-029 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.400372375734873 40 0.374245480249501 2 NA NA -5.78711855171882 LTS-029 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.795 1 NA NA NA NA NA LTS-029 chr10 51537127 51620317 83191 * c(TIMM23, MSMB, NA, NCOA4, PARG) 0.492 1 NA 0.784656611733947 161 0.234587371319534 4 4 0 -5.7644101499274 LTS-029 chr10 51620318 51633027 12710 * c(TIMM23, NA, PARG) 0.458189538804146 9 0.032508118644083 0.893977345505042 41 0.517345388710011 4 2 2 -7.44937103529144 LTS-029 chr10 51633028 51827839 194812 * c(NA, FAM21A, AGAP6, NA, PARG) 0.048 1 NA 0.646180451302972 4 0.0728394352897751 3 3 0 -5.80425623688906 LTS-029 chr10 51827840 62648752 10820913 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, FAM21A, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.0854004954327939 77 0.058954481555013 0.820066402600135 2843 0.333597033386374 4 4 0 -6.85285226001341 LTS-029 chr10 62648753 64974117 2325365 * c(MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, JMJD1C, ZNF365, NRBF2, ARID5B, ADO, RHOBTB1) 0.093545285186624 16 0.0688594885739552 0.741604563729532 1174 0.207711527610364 4 4 0 -6.86433489419095 LTS-029 chr10 64974118 65384706 410589 * c(MIR1296, REEP3, JMJD1C, JMJD1C-AS1) 0.0597192038756127 4 0.00939414711402797 1.01126330604915 194 0.323584463966101 6 6 0 -6.90019112238543 LTS-029 chr10 65384707 81316146 15931440 * c(DLG5-AS1, ZNF503-AS2, LINC00856, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, EIF5AL1, USP54, FUT11, OIT3, DNA2, EIF4EBP2, ZCCHC24, UNC5B, STOX1, C10orf35, TYSND1, TBATA, ATOH7, REEP3, ZSWIM8, DNAJC9, SIRT1, KAT6B, TSPAN15, ZNF503-AS1, NUDT13, HERC4, KIF1BP, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, CTNNA3, ANXA2P3, HK1, ANXA7, FAM149B1, NA NA NA NA NA NA NA NA NA LTS-029 HNRNPH3, DUPD1, LRRTM3, KCNMA1, C10orf105, C10orf55, LINC00595, DNAJC9-AS1, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, PBLD, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, DDX50, SYNPO2L, HKDC1, TET1, SLC25A16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 CAMK2G, C10orf11, PLA2G12B, MYPN, ZNF503, AIFM2, NDST2, SGPL1, MCU, DDX21, DLG5, CHST3, VPS26A, SEC24C, SPOCK2) 0.086673949262839 190 0.0445231625362327 0.747887348399375 10246 0.218649693639674 4 4 0 -7.18522555951623 LTS-029 NA NA NA NA LTS-029 chr10 81316147 81316455 309 * SFTPA2 0.5 1 NA 0.593337994434559 6 0.22661634245276 3 3 0 -5.76441667876196 LTS-029 chr10 81316456 81995059 678604 * c(BMS1P21, TMEM254-AS1, PLAC9, ANXA11, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.140232096203844 19 0.139737473154157 0.769398292851059 459 0.379017499051113 4 4 0 -6.85005456662353 LTS-029 chr10 81995060 116158786 34163727 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, FAS-AS1, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4679-1, MIR4483, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, SMNDC1, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, NA NA NA NA NA NA NA NA NA LTS-029 LDB3, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, CFL1P1, VTI1A, DYDC1, HECTD2, FGFBP3, ADRA2A, ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, LINC00858, DNTT, DUSP5, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, WAPL, PPRC1, RRP12, TBC1D12, DNMBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 FRAT2, IFIT5, CALHM1, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, GHITM, PDCD4, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, RBM20, PDCD4-AS1, FLJ37201, GRID1, BLNK, HABP2, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, VWA2, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, NHLRC2, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, GUCY2GP, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 C10orf62, MAT1A, LINC00863, IFIT1B, MIR346, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, ACSL5, PGAM1, PITX3, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CCDC186, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, AS3MT, MIR146B, STAMBPL1, GPAM, SEMA4G, ALDH18A1, ACTA2, RBP4, RGR, AVPI1, HPSE2, SCD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, ZDHHC6, RPL13AP6, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, SHOC2, TRIM8, TSPAN14, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, CASP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PCGF6, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, AFAP1L2, PYROXD2, USMG5, ATAD1, ARHGAP19, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, SMC3, NEURL1, LGI1, NOLC1, CDHR1, BBIP1, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A, DCLRE1A) 0.0799043716499158 476 0.0340290535257256 0.756463494962243 24248 0.256450893535326 4 4 0 -7.12785313865322 LTS-029 NA NA NA NA LTS-029 chr10 116158787 116164095 5309 * AFAP1L2 NA 0 NA 1.16 1 NA NA NA NA NA LTS-029 chr10 116164096 116213326 49231 * c(ABLIM1, AFAP1L2) NA 0 NA 1.00904598100786 177 0.226618147687526 5 NA NA -5.76647673491178 LTS-029 chr10 116213327 116222711 9385 * ABLIM1 NA 0 NA 0.713 1 NA NA NA NA NA LTS-029 chr10 116222712 116856484 633773 * c(TRUB1, ATRNL1, ABLIM1, FAM160B1) 0.0951437240771444 10 0.0326205456729344 0.721494399214343 378 0.179570873459887 4 4 0 -6.9726178190728 LTS-029 chr10 116856485 116881451 24967 * ATRNL1 NA 0 NA 0.952 1 NA NA NA NA NA LTS-029 chr10 116881452 119305334 2423883 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.0616233854585562 27 0.0348956115249999 0.830519648026356 1503 0.264827259378479 4 4 0 -6.93155191970548 LTS-029 chr10 119305335 119307573 2239 * EMX2 NA 0 NA 0.691 1 NA NA NA NA NA LTS-029 chr10 119307574 122263189 2955616 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.0825931861838387 22 0.029962928032438 0.72043687756315 1653 0.784910514363471 4 4 0 -6.7667983390219 LTS-029 chr10 122263190 122263266 77 * PLPP4 NA 0 NA 0.857 1 NA NA NA NA NA LTS-029 chr10 122263267 123688011 1424745 * c(ATE1, PLPP4, FGFR2, WDR11-AS1, WDR11) 0.0679933885640528 21 0.0358286264904263 0.815878539154338 558 0.314860325240774 4 4 0 -6.79447198936206 LTS-029 chr10 123688012 123718783 30772 * c(ATE1, NSMCE4A) NA 0 NA 0.998 1 NA NA NA NA NA LTS-029 chr10 123718784 125449354 1730571 * c(MIR3941, FAM24B-CUZD1, TACC2, BTBD16, FAM24A, PSTK, DMBT1, FAM24B, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, HTRA1, PLEKHA1, IKZF5, C10orf88, BUB3) 0.0500433519167273 38 0.0236408042263069 1.06328699769735 1548 0.306951450299458 6 6 0 -6.78545805390118 LTS-029 chr10 125449355 125449415 61 * GPR26 0.084 1 NA 0.583 1 NA NA NA NA NA LTS-029 chr10 125449416 126480233 1030818 * c(CPXM2, GPR26, NKX1-2, METTL10, OAT, CHST15, LHPP, FAM53B) 0.0856414277418538 13 0.0157797338380595 0.778285922777716 659 0.216905082024638 4 4 0 -6.86401265541938 LTS-029 chr10 126480234 126677478 197245 * c(CTBP2, FAM175B, METTL10, ZRANB1) 0.331 1 NA 0.751468949158757 233 0.169578614089074 4 4 0 -5.77213255244305 LTS-029 chr10 126677479 127585263 907785 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS, FANK1) 0.310755880119153 21 0.1520870051742 0.791317182647739 645 0.23538805993442 4 3 1 -6.74600690284928 LTS-029 chr10 127585264 127693479 108216 * c(FANK1-AS1, FANK1) 0.092 1 NA 0.876004636344636 39 0.185200311003199 5 5 0 -5.77693833622819 LTS-029 chr10 127693480 131633644 3940165 * c(LINC00601, C10orf90, CLRN3, DOCK1, EBF3, FOXI2, MGMT, MKI67, PTPRE, NPS, FAM196A, ADAM12, FANK1) 0.0772222066664929 52 0.031830433088292 0.80550108754688 1458 0.474323133216009 4 4 0 -6.7407551584785 LTS-029 chr10 131633645 132890648 1257004 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, EBF3, LINC00959) 0.0398994153564867 3 0.0301385688667085 1.09116682024215 240 0.288290877482028 6 6 0 -6.88557645682543 LTS-029 chr10 132890649 132890694 46 * TCERG1L NA 0 NA 0.465 1 NA NA NA NA NA LTS-029 chr10 132890695 133608355 717661 * c(TCERG1L, LINC01164) 0.100847819032592 7 0.0385029374265937 0.485631240469261 89 0.190737858844885 2 2 0 -7.23043551557058 LTS-029 chr10 133608356 133761285 152930 * c(LINC01164, PPP2R2D) 0.153 1 NA 0.453188670709783 33 0.0912765942981369 2 2 0 -5.76441999119626 LTS-029 chr10 133761286 134693137 931852 * c(DPYSL4, C10orf91, PWWP2B, JAKMIP3, STK32C, INPP5A, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.156951692020435 28 0.0733021849432902 0.492457273768717 925 0.171356069509144 2 2 0 -6.91130619036673 LTS-029 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.257 1 NA NA NA NA NA LTS-029 chr10 134694406 134756359 61954 * CFAP46 0 1 NA 0.254687091029994 166 0.153890262129825 1 1 0 -5.78809719404508 LTS-029 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 0.825 1 NA NA NA NA NA LTS-029 chr10 134884462 135381823 497362 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.148644915476064 27 0.0607860898392775 0.477631089144635 1353 0.155329289381873 2 2 0 -6.79503341103938 LTS-029 chr10 135381824 135473026 91203 * c(SPRNP1, FRG2B, SYCE1) 0.203639143825582 8 0.133310526323211 0.294078401251263 45 0.27150931862647 1 1 0 -6.73617033439705 LTS-029 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.410616673191189 3 0.0513841739578767 2 NA NA -5.76461073800461 LTS-029 chr11 193025 193112 88 * SCGB1C1 0.462 1 NA 0.424 1 NA NA NA NA NA LTS-029 chr11 193113 831559 638447 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1) 0.442621664508429 118 0.0506110145479026 0.760012734085298 2523 0.288190906478826 4 2 2 -6.85071590191027 LTS-029 chr11 831560 1013167 181608 * c(AP2A2, CRACR2B, MUC6, POLR2L, CHID1, TSPAN4, CD151) 0.425377391921987 15 0.118475354077587 0.80471861405449 445 0.210164219576505 4 2 2 -6.73562164927931 LTS-029 chr11 1013168 1016834 3667 * MUC6 0.247 1 NA 0.77921845303172 37 0.168651786011666 4 4 0 -5.76441401600618 LTS-029 chr11 1016835 1018483 1649 * MUC6 0.303359285575691 39 0.116176804623486 0.968843345860397 73 0.400135045220989 7 5 2 -6.7338053170603 LTS-029 chr11 1018484 1023496 5013 * MUC6 0.447 1 NA 0.641418317229143 31 0.192660987005617 3 3 0 -5.76451093194803 LTS-029 chr11 1023497 1642310 618814 * c(DUSP8, TOLLIP-AS1, KRTAP5-AS1, KRTAP5-1, KRTAP5-3, KRTAP5-2, MUC2, MUC6, TOLLIP, MUC5B, MOB2, BRSK2) 0.394649912093504 98 0.0898236302824698 0.854724290330635 1370 0.261911882778718 5 3 2 -6.79531885961718 LTS-029 chr11 1642311 1785626 143316 * c(FAM99B, CTSD, FAM99A, IFITM10, KRTAP5-5, KRTAP5-6, MOB2) NA 0 NA 0.830193916022543 181 0.12840611435044 4 NA NA -5.78088562004946 LTS-029 chr11 1785627 1852715 67089 * SYT8 NA 0 NA 0.392 1 NA NA NA NA NA LTS-029 chr11 1852716 1874221 21506 * c(LSP1, TNNI2, SYT8) 0.19 1 NA 0.41936099879591 101 0.0944205569998314 2 2 0 -5.77332059094069 LTS-029 chr11 1874222 3663422 1789201 * c(MIR675, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, H19, MRGPRG-AS1, C11orf21, TRPM5, IGF2, INS, KCNQ1, MRGPRG, LSP1, ASCL2, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, MRPL23, MIR483, TSSC2, SNORA54, TH, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, CARS, CD81) 0.137117762837126 65 0.0491766194837156 0.458241598369005 1835 0.135899450788483 2 2 0 -6.73992840135971 LTS-029 chr11 3663423 3681051 17629 * c(ART5, ART1) 0.104 1 NA 0.439986490128933 17 0.201924873187442 2 2 0 -5.76465160105192 LTS-029 chr11 3681052 4471625 790574 * c(LOC100506082, MIR4687, OR52K2, OR52B4, PGAP2, RHOG, ART1, NUP98, CHRNA10, RRM1, TRIM21, STIM1) 0.110218987692953 16 0.0476109231164446 0.461882877631375 771 0.177151105237734 2 2 0 -6.89857143704643 LTS-029 chr11 4471626 4496354 24729 * character(0) NA 0 NA 0.699 1 NA NA NA NA NA LTS-029 chr11 4496355 4968336 471982 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, OR51A4, TRIM68, OR51G1, OR51G2, OR51E2) 0.136974812450637 29 0.0463707749393183 0.53456894062096 673 0.362313718474834 2 2 0 -6.7915338660396 LTS-029 chr11 4968337 4976978 8642 * OR51A2 NA 0 NA 0.169070715041345 39 0.147393828299501 0 NA NA -5.78911293589599 LTS-029 chr11 4976979 5009215 32237 * character(0) NA 0 NA 0.481 1 NA NA NA NA NA LTS-029 chr11 5009216 5777005 767790 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.126255523465608 64 0.0567313006742352 0.51092755344275 1208 0.347996349732988 2 2 0 -6.80122818254359 LTS-029 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 0.759 1 NA NA NA NA NA LTS-029 chr11 5798827 5810011 11185 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.131862125755013 3 0.0310859024854247 0.697250081784513 50 0.44047517060371 2 2 0 -6.74626662467984 LTS-029 chr11 5810012 5817707 7696 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.427 1 NA NA NA NA NA LTS-029 chr11 5817708 7961130 2143423 * c(TRIM22, TRIM3, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, RBMXL2, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, CYB5R2, MRPL17, SMPD1, TAF10, ZNF214, ZNF215, FAM160A2, PPFIBP2, NA NA NA NA NA NA NA NA NA LTS-029 TRIM5, OR6A2, DCHS1, CCKBR) 0.134291943179401 113 0.0510397254246981 0.472125988456758 3482 0.226137920236282 2 2 0 -6.77316674137152 LTS-029 NA NA NA NA LTS-029 chr11 7961131 8017224 56094 * c(NLRP10, EIF3F) 0.099 1 NA 0.463195372319968 103 0.138011452607485 2 2 0 -5.76518145166216 LTS-029 chr11 8017225 8959441 942217 * c(LMO1, AKIP1, C11orf16, ASCL3, RPL27A, SNORA3A, STK33, ST5, SNORA3B, TUB, RIC3, EIF3F, TRIM66) 0.132452703370014 14 0.0651903805349049 0.460712568806111 1237 0.126090320784795 2 2 0 -6.74263676463867 LTS-029 chr11 8959442 13716529 4757088 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, USP47, PARVA, TMEM9B, NRIP3, ASCL3, PTH, SCUBE2, ZBED5, LOC644656, RASSF10, SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.142990925713197 46 0.0558941070930511 0.440116519239265 3475 0.20842037092917 2 2 0 -6.80410154000572 LTS-029 chr11 13716530 13721851 5322 * FAR1 NA 0 NA 0.763 1 NA NA NA NA NA LTS-029 chr11 13721852 13753287 31436 * FAR1 0 2 0 0.765812696605376 146 0.309530320975526 0 0 0 -Inf LTS-029 chr11 13753288 14264916 511629 * c(SPON1, FAR1) 0.473 1 NA 0.844397051392843 54 0.244770464646743 4 4 0 -5.79177437435213 LTS-029 chr11 14264917 17398729 3133813 * c(SPON1, OR7E14P, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, NCR3LG1, INSC, NUCB2, PDE3B, PIK3C2A, SOX6, PSMA1, RPS13, CALCA, CALCB) 0.449974088694869 32 0.0867732491854117 0.761077728595453 1604 0.459767893655913 4 2 2 -6.81001910923648 LTS-029 chr11 17398730 17407400 8671 * c(NCR3LG1, KCNJ11) NA 0 NA 0.894 1 NA NA NA NA NA LTS-029 chr11 17407401 17803938 396538 * c(USH1C, OTOG, KCNC1, KCNJ11, MYOD1, ABCC8) 0.457750030366934 31 0.0498065505041082 0.8454455555952 1020 0.288692790279668 4 2 2 -7.06770300203797 LTS-029 chr11 17803939 18720551 916613 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, GTF2H1, KCNC1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.456785485352213 27 0.104683786503427 0.722030596844282 1271 0.212504663607329 4 2 2 -6.88779841397699 LTS-029 chr11 18720552 18722483 1932 * TMEM86A NA 0 NA 0.846 1 NA NA NA NA NA LTS-029 chr11 18722484 31816383 13093900 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, ELP4, IGSF22, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, PAX6, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.430305201791458 95 0.111875175401966 0.821983807789507 4344 0.242636769972158 4 2 2 -7.01142146528862 LTS-029 chr11 31816384 31821754 5371 * PAX6 NA 0 NA 1.799 1 NA NA NA NA NA LTS-029 chr11 31821755 31828115 6361 * PAX6 0.453 1 NA 1.11419186785151 120 0.233977014720179 6 6 0 -5.76441029809292 LTS-029 chr11 31828116 31837960 9845 * PAX6 NA 0 NA 0.55 1 NA NA NA NA NA LTS-029 chr11 31837961 34533429 2695469 * c(C11orf91, HIPK3, EIF3M, CSTF3, ELF5, KIAA1549L, ABTB2, FBXO3, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, WT1, PRRG4, QSER1, CAT, DEPDC7, CD59) 0.430787551449112 76 0.119227403979325 0.763386280585746 2494 0.236566651479863 4 2 2 -6.75948575947262 LTS-029 chr11 34533430 34643823 110394 * c(ELF5, EHF) NA 0 NA 1.138 1 NA NA NA NA NA LTS-029 chr11 34643824 34682597 38774 * EHF NA 0 NA 1.03357290011011 94 0.197629897567955 6 NA NA -5.76790654019155 LTS-029 chr11 34682598 34903818 221221 * c(EHF, APIP) NA 0 NA 0.701 1 NA NA NA NA NA LTS-029 chr11 34903819 35440882 537064 * c(MIR1343, APIP, SLC1A2, PDHX, CD44) 0.466407182034972 17 0.0291185457377657 0.698011162094191 612 0.153238800568172 4 2 2 -8.12826996702552 LTS-029 chr11 35440883 35441417 535 * SLC1A2 NA 0 NA 1.106 1 NA NA NA NA NA LTS-029 chr11 35441418 46401517 10960100 * c(MIR670, LOC100507205, ALKBH3-AS1, LOC100507384, MIR3973, MIR4688, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, EXT2, ALKBH3, LOC221122, FJX1, PAMR1, COMMD9, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, MIR129-2, HSD17B12, PHF21A, TRIM44, SLC35C1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, TRAF6, SEC14L1P1, PRR5L, ACCS, DGKZ, CHST1, API5, TSPAN18, CREB3L1, PEX16, MAPK8IP1, TP53I11) 0.413994646091629 45 0.122131374868511 0.793152735520755 3206 0.301325957364053 4 2 2 -6.74289536270193 LTS-029 chr11 46401518 46406767 5250 * c(CHRM4, MDK, DGKZ) 0.467 1 NA 0.743779102283605 40 0.213978976920871 4 4 0 -5.76460797609576 LTS-029 chr11 46406768 47447816 1041049 * c(MIR3160-2, MIR3160-1, LRP4-AS1, NR1H3, MIR5582, CHRM4, DDB2, F2, HARBI1, PACSIN3, ARHGAP1, LRP4, MYBPC3, ACP2, AMBRA1, PSMC3, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, MADD, SLC39A13, ATG13, CKAP5) 0.463757530323455 50 0.0326063972688971 0.759334278084974 2152 0.178291341043534 4 2 2 -7.66069846859194 LTS-029 chr11 47447817 47611152 163336 * c(CELF1, PTPMT1, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.457964510463628 2 0.0346482322781408 0.695174227941499 316 0.146968736005554 4 2 2 -7.43074312240297 LTS-029 chr11 47611153 47640349 29197 * c(C1QTNF4, MTCH2) 0.021 1 NA 0.645461620616659 63 0.230240747573747 3 3 0 -5.76498076188508 LTS-029 chr11 47640350 47857253 216904 * c(NUP160, FNBP4, MTCH2, AGBL2) 0.401976921476109 13 0.144254893708929 0.712813646323743 486 0.206039205714083 4 2 2 -6.77106858907743 LTS-029 chr11 47857254 48285558 428305 * c(OR4X2, OR4B1, NUP160, OR4X1, PTPRJ) 0.455 1 NA 0.723851814439525 293 0.245911602695308 4 4 0 -5.79201926464492 LTS-029 chr11 48285559 48346794 61236 * c(OR4C3, OR4S1, OR4X1) 0.312578819475226 9 0.0260528309402261 1.25889625382611 57 1.47557427905461 10 7 3 -6.7355892895318 LTS-029 chr11 48346795 48387983 41189 * c(OR4C3, OR4C45) 0.341679682254404 88 0.0562913646816459 1.67991132047666 148 1.42753290699107 12 8 4 -6.73365917637924 LTS-029 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.744 1 NA NA NA NA NA LTS-029 chr11 48387986 48388717 732 * character(0) 0.351965808096102 8 0.0713382285814756 1.4439886328582 12 0.715506241634678 6 4 2 -6.73369055046902 LTS-029 chr11 48388718 50247008 1858291 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C) NA 0 NA 0.793321489277511 389 0.29890523687319 4 NA NA -5.76587959494378 LTS-029 chr11 51411308 51527703 116396 * c(OR4C46, OR4A5) NA 0 NA 1.13937499935172 63 0.183525185191544 6 NA NA -5.76530871932362 LTS-029 chr11 55035776 55322211 286436 * c(TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) 0.395 1 NA 1.0262929035624 49 0.233493040581513 5 5 0 -5.78299418359848 LTS-029 chr11 55322212 55340582 18371 * c(OR4C16, OR4C15) 0.366545378195458 5 0.0198821528009419 1.35239132892742 44 0.939198543617929 11 7 4 -6.73979870374586 LTS-029 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.483 1 NA NA NA NA NA LTS-029 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.441435479816933 67 0.0766116452515553 2 NA NA -5.76809671043918 LTS-029 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.048 1 NA NA NA NA NA LTS-029 chr11 55432533 56508619 1076087 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, TRIM51) 0.253741445021661 37 0.106465851226943 1.26065288060689 906 0.805231552238457 8 6 2 -6.76804450513595 LTS-029 chr11 56508620 56508629 10 * character(0) NA 0 NA 0.934 1 NA NA NA NA NA LTS-029 chr11 56508630 56570095 61466 * OR9G4 0.306766034289855 3 0.00611010092660777 1.26703969507079 33 1.56934118584066 7 5 2 -6.74437812047232 LTS-029 chr11 56570096 57004344 434249 * c(APLNR, OR5AK4P, LRRC55, OR5AK2) 0.321 1 NA 1.1276070607005 188 0.205149979132041 6 6 0 -5.76508444292116 LTS-029 chr11 57004345 61727447 4723103 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, PRG3, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, APLNR, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, ZDHHC5, TKFC, DKFZP434K028, TIMM10, GIF, PRPF19, SELENOH, LOC283194, LINC00301, SLC43A3, NA NA NA NA NA NA NA NA NA LTS-029 MS4A10, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, PRG2, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, SSRP1, STX3, MIR611, TCN1, SERPING1, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, ZFP91, OR10W1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, SYT7, CD5, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN, FADS2) 0.335741400444137 98 0.0824409185383233 1.09958339933135 6943 0.300241875056229 6 4 2 -6.75699986321024 LTS-029 NA NA NA NA LTS-029 chr11 61727448 61729707 2260 * BEST1 NA 0 NA 0.977 1 NA NA NA NA NA LTS-029 chr11 61729708 66191263 4461556 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, KCNK7, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, SCGB1D2, SCGB1D1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, CATSPER1, HRASLS5, COX8A, C11orf84, CST6, CTSW, GPHA2, EEF1G, MARK2, ESRRA, FAU, TIGD3, LRRN4CL, HNRNPUL2, FKBP2, ATG2A, GANAB, FAM89B, NA NA NA NA NA NA NA NA NA LTS-029 SNHG1, POLA2, FLRT1, FTH1, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, EML3, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, EFEMP2, SLC29A2, DNAJC4, INCENP, TMEM179B, MALAT1, SLC22A25, SLC22A10, SPDYC, PCNX3, ARL2, SCGB1D4, LTBP3, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, MAP3K11, SLC22A20, OVOL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, PYGM, MAP4K2, RARRES3, RELA, DPF2, ROM1, KLC2, TUT1, SIPA1, SLC3A2, C11orf95, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, METTL12, SF1, ZFPL1, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, MUS81, FOSL1, INTS5, RAB1B, CAPN1, C11orf68, FERMT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 TRPT1, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, BANF1, GAL3ST3, RPS6KA4, SART1, AP5B1, FIBP, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, RIN1) 0.335698739794087 171 0.102650443680928 1.04878004910386 11856 0.280498600143164 6 4 2 -6.87232375512538 LTS-029 NA NA NA NA LTS-029 chr11 66191264 117780764 51589501 * c(NAALAD2, KCNE3, MIR708, LOC100129216, LOC100130987, LOC100132078, LOC100133315, WTAPP1, NCAM1-AS1, KCTD21-AS1, MIR1304, MIR548K, SNORA70E, BACE1-AS, MIR4300, MIR4301, MIR3165, MIR1260B, MIR3920, MIR3664, RAB30-AS1, LOC100506368, CASP12, TPBGL, RBM14-RBM4, HSPB2-C11orf52, NDUFC2-KCTD14, FXYD6-FXYD2, MIR4490, MIR4491, MIR4696, MIR4691, MIR4692, MIR4693, LOC100652768, IL18BP, DPP3, MIR5579, GRM5-AS1, JRKL-AS1, SHANK2-AS1, NA NA NA NA NA NA NA NA NA LTS-029 LOC101054525, RBM7, CDK2AP2, TCIRG1, YAP1, RBM14, POLD3, CTSC, STARD10, NEU3, ME3, GPR83, PRSS23, CHKA, SLCO2B1, SNORD15B, CARD16, TMEM123, MRGPRD, APOA5, MRGPRF, ARAP1, SLC36A4, FAT3, TRIM64, COLCA2, PIH1D2, NXPE1, NXPE2, CLNS1A, CPT1A, CRYAB, XRRA1, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, GRK2, DEUP1, C11orf65, DDX10, DHCR7, DLAT, DLG2, DRD2, B3GNT6, CTTN, FOLH1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MRPL21, TPCN2, GDPD4, DDIAS, CCDC83, ORAOV1, SHANK2-AS3, LRTOMT, FAM181B, CCDC89, ALDH3B1, ALDH3B2, FDX1, FGF3, FGF4, CEP164, SHANK2, KDM2A, ENDOD1, EXPH5, FAM168A, SIK2, SIK3, FOLR1, FOLR2, FOLR3, CLCF1, BACE1, RAB38, CADM1, PANX1, DEFB108B, PELI3, FUT4, ANGPTL5, RNF169, ZDHHC24, C11orf86, NUDT8, ANKK1, RNF214, CHRDL2, ANAPC15, TSKU, REXO2, C2CD3, TENM4, LRRC32, TIMM8B, MYEOV, NPAS4, CHORDC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RAB30, AQP11, LINC00900, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, GRIA4, C11orf54, AAMDC, GRM5, GSTP1, GUCY1A2, RHOD, BIRC2, BIRC3, HSPB2, APOA1, HTR3A, APOA4, ANKRD13D, ANKRD42, C11orf53, OR2AT4, HEPHL1, APOC3, TBX10, PLET1, IGHMBP2, IL18, INPPL1, TBC1D10C, DNAJB13, ACAT1, KRTAP5-9, KRTAP5-10, LIPT2, VSTM5, GPR152, DOC2GP, GUCY2EP, TRIM77, IZUMO1R, KDM4E, FLJ42102, C11orf87, COLCA1, C11orf88, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PHOX2A, LRP5, MIR139, MIR34B, MIR34C, ARRB1, MAP6, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, KRTAP5-7, KRTAP5-11, CARD17, MIR326, MTNR1B, MYO7A, NCAM1, NDUFC2, ATM, NDUFV1, NDUFS8, NNMT, FXYD2, NPAT, NUMA1, OMP, P2RY2, P2RY6, PAFAH1B2, NOX4, PAK1, PC, GAL, SIDT2, KMT5B, COA4, PDE2A, PPME1, CABP2, HIKESHI, CWC15, PCF11, MRPL48, RSF1, PGR, FXYD6, C11orf24, CNTN5, C11orf71, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, SYTL2, ANKRD49, SSH3, TTC12, PPP1CA, LAMTOR1, ANO1, PPP2R1B, NADSYN1, FAM86C1, C11orf57, CCDC87, PPP6R3, RNF121, ACER3, PRCP, ELMOD1, KDM4D, TMEM126B, THAP12, TEX12, SMCO4, EMSY, CABP4, TRIM49, CORO1B, DSCAML1, USP35, CEP126, ARHGAP20, CARNS1, USP28, POLD4, KRTAP5-8, PTPRCAP, PTS, BBS1, PLEKHB1, CREBZF, RAB6A, RAD9A, CARD18, RBM4, CCND1, RDX, CCDC90B, CCDC81, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 AASDHPPT, SNORD15A, RPS3, SCARNA9, RPS6KB2, SDHD, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, LOC643733, LOC643923, CLDN25, FAM86C2P, C11orf1, MRPL11, TMEM135, SNORA8, SLN, KCTD14, SPTBN2, SNORA18, SNORA40, TAGLN, SNORD5, THRSP, TRPC6, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ZBTB16, LRFN4, ALG8, TAF1D, DYNC2H1, C11orf80, NARS2, CCDC82, ALG9, MOGAT2, TMEM134, PAAF1, PDGFD, CUL5, TMPRSS5, GDPD5, CLPB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 UNC93B1, PICALM, FZD4, CASP1, CASP4, RBM4B, CASP5, BCO2, TMEM133, TMPRSS13, TMEM126A, DCUN1D5, MSANTD4, MAML2, DGAT2, BUD13, RELT, PPFIA1, C11orf70, DIXDC1, CEP295, ZC3H12C, OR7E2P, JRKL, SERPINH1, CTSF, EED, FADD, ZPR1, MTMR2, ACTN3, ATG16L2, AIP, PCSK7, SYT12, ACY3, HTR3B, ALKBH8, ZW10, FDXACB1, INTS4, MMP20, MED17, PITPNM1, TESMIN, CEP57, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19, CCS, RCE1) 0.330389044775211 660 0.0962862563877772 1.0845933846354 33672 0.317632414070126 6 4 2 -6.99574671761636 LTS-029 NA NA NA NA LTS-029 chr11 117780765 117781397 633 * TMPRSS13 NA 0 NA 0.51 1 NA NA NA NA NA LTS-029 chr11 117781398 119025714 1244317 * c(LOC100131626, MIR3656, TMPRSS4-AS1, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, H2AFX, HMBS, CCDC84, IL10RA, ARCN1, KMT2A, TRAPPC4, VPS11, TMPRSS4, IFT46, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, RPL23AP64, UPK2, TMPRSS13, TMEM25, CD3D, CD3E, CD3G, UBE4A, C2CD2L) 0.328883609457944 49 0.117572683410534 1.0283583875176 3499 0.543266792880601 6 4 2 -6.76862001111783 LTS-029 chr11 119025715 119027054 1340 * ABCG4 NA 0 NA 1.41 1 NA NA NA NA NA LTS-029 chr11 119027055 129801124 10774070 * c(PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, CHEK1, TIRAP, PANX3, TMEM45B, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, HEPACAM, OAF, FLI1, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, CCDC153, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, GRIK4, DDX25, HSPA8, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, NA NA NA NA NA NA NA NA NA LTS-029 OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, NFRKB, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, ABCG4, HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, TECTA, THY1, ZNF202, RNF26, FAM118B, NLRX1, MSANTD2, CLMP, PDZD3, C11orf63, CCDC15, PUS3, MFRP, KIRREL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RPUSD4, TBRG1, UBASH3B, BARX2, CBL, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.332191141176005 203 0.0934681868648972 1.1053041665989 9155 0.554641401948114 6 4 2 -6.75592816613555 LTS-029 NA NA NA NA LTS-029 chr11 129801125 129939826 138702 * c(APLP2, LINC00167, PRDM10) 0.388 1 NA 1.04243048873133 76 0.214930896687464 6 6 0 -5.77275453307025 LTS-029 chr11 129939827 130263721 323895 * c(ZBTB44, APLP2, ST14) 0.381921279166593 4 0.0387674691805729 1.09441764740646 461 0.241524610349563 5 3 2 -6.92504741218545 LTS-029 chr11 130263722 130270812 7091 * character(0) NA 0 NA 0.707 1 NA NA NA NA NA LTS-029 chr11 130270813 134251777 3980965 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.430924668613168 45 0.100538886391126 0.805964527504891 1855 0.281310096420442 4 2 2 -6.76091335707546 LTS-029 chr11 134251778 134856681 604904 * c(B3GAT1, LOC283177) NA 0 NA 0.852170256224535 39 0.133156919392821 4 NA NA -5.90030399962321 LTS-029 chr12 90923 309955 219033 * c(LOC100288778, IQSEC3, LOC574538, SLC6A12, FAM138D) 0.157 1 NA 0.482548622493244 265 0.190200104370863 2 2 0 -5.77826468208411 LTS-029 chr12 309956 9590665 9280710 * c(LINC00940, LINC00942, LINC00987, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, KLRG1, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, SLC2A14, A2ML1, A2M-AS1, FBXL14, CLEC4C, ZNF384, DSTNP2, ATN1, PHC1, PIANP, DCP1B, A2M, ENO2, FGF6, FKBP4, FOXM1, ERC1, LINC00612, IFFO1, GAPDH, NECAP1, CLEC4E, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, NA NA NA NA NA NA NA NA NA LTS-029 A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, KCNA1, KCNA5, KCNA6, LINC00937, LAG3, LTBR, MIR141, MIR200C, M6PR, ZNF705A, FAM66C, DDX12P, NDUFA9, NINJ2, NOP2, NTF3, COPS7A, CLEC4A, ING4, MRPL51, C1RL, TAPBPL, FAM90A1, PLEKHG6, FOXJ2, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, AICDA, RIMKLB, PTMS, PTPN6, PEX5, PZP, RAD52, KDM5A, SCNN1A, POU5F1P3, LOC642846, WNK1, SLC2A3, FAM86FP, SLC6A12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, C3AR1, TULP3, VWF, CACNA1C, ADIPOR2, NANOG, FGF23, MFAP5, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, CD9, CD163, CACNA2D4, CD27, CLEC6A, GDF3, CLSTN3, NCAPD2) 0.159469037536948 207 0.0608510076269516 0.459710680151824 11181 0.176621593551852 2 2 0 -6.85869948969739 LTS-029 NA NA NA NA LTS-029 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.798 1 NA NA NA NA NA LTS-029 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.804586361440309 93 0.193382412843071 4 NA NA -5.76525691782785 LTS-029 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.261 1 NA NA NA NA NA LTS-029 chr12 9747241 10565113 817873 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.160939253679866 39 0.0349457068772374 0.420041224993761 1081 0.161980474387006 2 2 0 -7.15099266044062 LTS-029 chr12 10565114 10571620 6507 * KLRC3 NA 0 NA 0.456584207783156 17 0.0659354630992886 2 NA NA -5.7644482879651 LTS-029 chr12 10571621 10572059 439 * KLRC3 NA 0 NA 0.538 1 NA NA NA NA NA LTS-029 chr12 10572060 10573094 1035 * KLRC3 0.258 1 NA 0.554635202062069 8 0.13005156944184 3 3 0 -5.76485473546406 LTS-029 chr12 10573095 10602459 29365 * c(KLRC1, KLRC2, KLRC3) 0.205154307760487 6 0.136180272678045 0.65478867975014 121 0.396493526639044 6 5 1 -6.76480744043095 LTS-029 chr12 10602460 10603088 629 * KLRC1 NA 0 NA 0.402 1 NA NA NA NA NA LTS-029 chr12 10603089 11215070 611982 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.270121614591723 36 0.0850134023047459 0.441708535201496 675 0.150672669365644 2 2 0 -7.96855789800792 LTS-029 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.054 1 NA NA NA NA NA LTS-029 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) 0.122 1 NA 0.0520015180391489 48 0.0428495429769482 0 0 0 -6.02252521077326 LTS-029 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 0.631 1 NA NA NA NA NA LTS-029 chr12 11285579 11904752 619174 * c(SMIM10L1, PRH1-PRR4, ETV6, TAS2R30, LINC01252, TAS2R42, PRB1, PRB3, PRB4, PRB2) 0.256866851559215 17 0.0658549542555456 0.466979053891686 155 0.155673821664309 2 2 0 -8.30730958623027 LTS-029 chr12 11904753 11904767 15 * ETV6 0.179 1 NA 0.145 1 NA NA NA NA NA LTS-029 chr12 11904768 22838612 10933845 * c(LOC100506314, LOC100506393, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, C12orf60, EMP1, EPS8, ETV6, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, SLCO1B7, KCNJ8, RPL13AP20, LDHB, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, ETNK1, GPRC5D, ATF7IP, H2AFJ, LMO3, CMAS, NA NA NA NA NA NA NA NA NA LTS-029 FAM234B, PTPRO, RECQL, ST8SIA1, SLCO1A2, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, C2CD5) 0.154645188510848 102 0.0691599853392257 0.468761510791091 5858 0.165146715590582 2 2 0 -7.02895509135861 LTS-029 NA NA NA NA LTS-029 chr12 23682387 27788494 4106108 * c(MIR920, MIR4302, RASSF8-AS1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, SMCO2, ITPR2, KRAS, LRMP, TM7SF3, CASC1, ASUN, ARNTL2, BCAT1, SOX5, C12orf71, BHLHE41, SSPN, PPFIBP1, MED21) 0.0963968199603683 33 0.0427712157173419 0.762475340636077 2282 0.246619348027563 4 4 0 -6.87297933254376 LTS-029 chr12 27788495 27789383 889 * PPFIBP1 0.0439029533532143 13 0.0185465457423845 2.062357766277 39 9.36776553392086 8 8 0 -6.73649240603828 LTS-029 chr12 27789384 27789421 38 * PPFIBP1 NA 0 NA 0.923 1 NA NA NA NA NA LTS-029 chr12 27789422 32943758 5154337 * c(MANSC4, LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, OVCH1, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, PKP2, KIAA1551, CCDC91, FAR2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, FLJ13224, TMTC1, PPFIBP1) 0.11786470082741 93 0.0386316199121393 0.768563154161832 3228 0.231379668990775 4 4 0 -7.33162695268817 LTS-029 chr12 32943759 32943842 84 * PKP2 NA 0 NA 0.885 1 NA NA NA NA NA LTS-029 chr12 32943843 34175508 1231666 * c(SYT10, PKP2, ALG10) 0.107074556071009 7 0.0305419305841907 0.876448934584234 227 0.392279605134823 4 4 0 -7.2840591863085 LTS-029 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 0.884634342637443 55 0.170182229524093 5 NA NA -5.76517140172221 LTS-029 chr12 38710341 38710459 119 * character(0) 0.131 1 NA 0.370751681485955 3 0.29465403442003 2 2 0 -5.76444331743098 LTS-029 chr12 38710460 42477989 3767530 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, KIF21A) 0.083867175883288 30 0.0608648493389861 0.797489187845709 2132 0.251954263803395 4 4 0 -6.74740928578876 LTS-029 chr12 42477990 42478316 327 * GXYLT1 0 1 NA 1.31080027793482 13 0.938126986921144 7 7 0 -5.76441024847257 LTS-029 chr12 42478317 42478481 165 * GXYLT1 0.276 1 NA 1.26005276797857 5 1.31512858686898 7 7 0 -5.76441015081241 LTS-029 chr12 42478482 42479719 1238 * GXYLT1 0.315919936923306 13 0.0537052735795695 1.29128139956129 50 0.703806820666244 13 9 4 -6.73405685757458 LTS-029 chr12 42479720 42479756 37 * GXYLT1 NA 0 NA 0.873649251992457 2 0.122329473145273 5 NA NA -5.76442035071404 LTS-029 chr12 42479757 42481101 1345 * GXYLT1 0.085 1 NA 0.699810486590267 21 0.293897828051405 4 4 0 -5.76453267056835 LTS-029 chr12 42481102 58203377 15722276 * c(HOTAIR, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1228, MIR1293, LOC100335030, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, YAF2, CDK2, CDK4, RNF41, GDF11, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, ADCY6, GALNT6, NXPH4, KRT71, GPR182, LARP4, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, RHEBL1, NA NA NA NA NA NA NA NA NA LTS-029 C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, COL2A1, ASB8, MYL6B, KRT72, CS, PRICKLE1, BCDIN3D, KRT80, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ANO6, ARID2, EIF4B, CELA1, ERBB3, COPZ1, R3HDM2, FAIM2, DDN, NEMP1, ESYT1, TNS2, KCNH3, CBX5, ANP32D, SMUG1, STAC3, OR6C74, OR6C3, LINC00935, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 GLI1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, GXYLT1, TMPRSS12, KRT6C, ORMDL2, RACGAP1, SENP1, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, ARF3, KIF5A, KRT1, KRT2, KRT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FIGNL2, OR6C65, OR6C68, LRP1, MIR196A2, ASIC1, MARS, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NELL2, NFE2, SLC11A2, PA2G4, ATP5B, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PPHLN1, IL23A, HDAC7, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, PRIM1, SLC48A1, PRKAG1, LMBR1L, PRPH, NDUFA4L2, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SUOX, TAC3, TARBP2, SNORD59B, MIR615, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, PIP4K2C, DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, CSRNP2, PUS7L, INHBE, RACGAP1P, FAM186B, TMEM117, PYM1, SARNP, SOAT2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MARCH9, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.0819949734274666 420 0.0374180818328641 0.750685574670829 25271 0.330739003254144 4 4 0 -6.90443420173919 LTS-029 NA NA NA NA LTS-029 chr12 58203378 58216989 13612 * c(CTDSP2, AVIL) 0.383 1 NA 0.683277853355838 113 0.137868744721839 3 3 0 -5.76857513852546 LTS-029 chr12 58216990 58220872 3883 * c(CTDSP2, MIR26A2) 0.36013312456269 19 0.093335338324329 0.797815280198404 69 0.369614073171063 3 2 1 -6.73474383630565 LTS-029 chr12 58220873 58335626 114754 * c(LOC100506844, CTDSP2, ATP23) 0.057 1 NA 0.573016373685465 38 0.196326882177959 3 3 0 -5.77511852813928 LTS-029 chr12 58335627 60176407 1840781 * c(LRIG3, ATP23, SLC16A7) 0.108287521827697 2 0.0148492424049175 0.812603225678292 337 0.178273105698776 4 4 0 -8.5720687736762 LTS-029 chr12 62102011 66911771 4809761 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, MON2, TBC1D30, GRIP1, LEMD3, MSRB3, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, FLJ41278, MIRLET7I, TMBIM4, AVPR1A, PPM1H, SRGAP1, MIR548C, HMGA2, LLPH, HELB, USP15) 0.128929749920702 60 0.0642323180180048 0.467204373255436 3379 0.155163481123806 2 2 0 -6.84134079211402 LTS-029 chr12 66911772 67692840 781069 * c(GRIP1, CAND1) 0 1 NA 0.464667268903078 83 0.147212095687351 2 2 0 -5.77690966239208 LTS-029 chr12 67692841 68059177 366337 * c(CAND1, DYRK2) 0.123903997738579 7 0.0288526634901562 0.463682521194702 394 0.114796335683692 2 2 0 -6.83141545537727 LTS-029 chr12 68059178 68548511 489334 * character(0) NA 0 NA 0.831 1 NA NA NA NA NA LTS-029 chr12 68548512 69969152 1420641 * c(LOC100130075, MIR1279, SNORA70G, LOC100507250, FRS2, CPSF6, CPM, IFNG, LYZ, MDM2, IL22, SLC35E3, IL26, MDM1, NUP107, RAP1B, YEATS4) 0.0767440972304551 22 0.0394047978707935 0.70295256856418 1042 0.196475933375198 4 4 0 -6.9901939851284 LTS-029 chr12 69969153 72680723 2711571 * c(MIR3913-2, MIR3913-1, CCT2, FRS2, RAB3IP, TPH2, BEST3, ZFC3H1, RAB21, KCNMB4, TRHDE-AS1, TRHDE, LRRC10, CNOT2, TMEM19, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.0969108759034498 57 0.0628867931036968 0.791366309654726 2487 0.297414877356201 4 4 0 -6.78689693049179 LTS-029 chr12 72680724 72771788 91065 * TRHDE NA 0 NA 0.443 1 NA NA NA NA NA LTS-029 chr12 72771789 75435647 2663859 * c(LOC100507377, TRHDE, KCNC2, ATXN7L3B) 0 1 NA 0.483159100344754 231 0.131714738905509 2 2 0 -6.11039015656279 LTS-029 chr12 75435648 75437203 1556 * KCNC2 0.157 1 NA 0.490056673706006 27 0.163474280716694 2 2 0 -5.76461855977901 LTS-029 chr12 75437204 78225460 2788257 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, BBS10, CAPS2, NAV3) 0.120131979788704 8 0.062018286473772 0.430436483318165 1451 0.134989992420405 2 2 0 -7.01071181203534 LTS-029 chr12 78225461 78334025 108565 * NAV3 NA 0 NA 0.662 1 NA NA NA NA NA LTS-029 chr12 78334026 89742951 11408926 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, DUSP6, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.122916853147656 52 0.0655207559252301 0.488462427735585 3493 0.1827367844505 2 2 0 -7.70775394861327 LTS-029 chr12 89742952 89743026 75 * DUSP6 NA 0 NA 0.255 1 NA NA NA NA NA LTS-029 chr12 89743027 108168585 18425559 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, TCP11L2, NA NA NA NA NA NA NA NA NA LTS-029 LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 RFX4, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, MTERF2, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, TMEM263, NUAK1, NR1H4) 0.136001340833969 205 0.0629347194290451 0.447374039167779 11584 0.287658887347612 2 2 0 -6.75868463789414 LTS-029 NA NA NA NA LTS-029 chr12 108168586 108170454 1869 * ASCL4 NA 0 NA 0.486557185826512 37 0.0977678503013775 2 NA NA -5.76498627583682 LTS-029 chr12 108170455 108589027 418573 * c(LOC728739, WSCD2) NA 0 NA 0.695 1 NA NA NA NA NA LTS-029 chr12 108589028 108685679 96652 * c(CMKLR1, WSCD2) 0 1 NA 0.76476282912303 207 0.316839829573619 4 4 0 -5.76479493287191 LTS-029 chr12 108685680 109490686 805007 * c(USP30-AS1, FICD, CMKLR1, DAO, ISCU, CORO1C, TMEM119, SSH1, SVOP, SELPLG, USP30, SART3) 0.0744627068800237 21 0.0375860916525553 0.72937140915786 990 0.233200778074314 4 4 0 -6.78620649105821 LTS-029 chr12 109490687 109491658 972 * c(USP30-AS1, USP30) NA 0 NA 1.034 1 NA NA NA NA NA LTS-029 chr12 109491659 110296619 804961 * c(USP30-AS1, MIR4497, ALKBH2, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, TRPV4, UNG, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B) 0.0801970318278769 48 0.025989146329773 0.810071809959339 1717 1.00227717799063 4 4 0 -6.73700652571775 LTS-029 chr12 110296620 110318135 21516 * GLTP NA 0 NA 0.704 1 NA NA NA NA NA LTS-029 chr12 110318136 113495844 3177709 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, DTX1, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, OAS1, OAS2, OAS3, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.0677908314054513 28 0.0395529248278033 0.731682928075197 4496 0.228999259471739 4 4 0 -6.94760941714604 LTS-029 chr12 113495845 116398217 2902373 * c(SDS, SDSL, IQCD, DTX1, PLBD2, MED13L, TBX5-AS1, CFAP73, TPCN1, LHX5, TBX5, TBX3, DDX54, SLC8B1, RASAL1, RITA1, RBM19) 0.0653218731205374 18 0.046417401514935 0.801586850728998 1472 0.23583914014413 4 4 0 -6.79302065163997 LTS-029 chr12 116398218 124399113 8000896 * c(LINC00173, MIR1178, MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4498, MIR4472-2, MIR4700, MPHOSPH9, CAMKK2, TMED2, GCN1, RAB35, SNRNP35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, RILPL2, DNAH10, EIF2B1, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, ABCB9, ATP6V0A2, LRRC43, FBXW8, HSPB8, HCAR1, MORN3, KSR2, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, TMEM233, NA NA NA NA NA NA NA NA NA LTS-029 KMT5A, MSI1, NOS1, P2RX4, P2RX7, PEBP1, ARL6IP4, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, VSIG10, TESC, SBNO1, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PITPNM2, DDX55, PXN, RFC5, BCL7A, RPLP0, CLIP1, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, HNF1A, MIR620, B3GNT4, OGFOD2, VPS37B, C12orf49, TCTN2, RNF34, CDK2AP1, COQ5, SRRM4, CCDC62, KDM2B, UNC119B, ORAI1, RNFT2, DENR, OASL, DYNLL1, SRSF9, HRK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 HCAR3, HIP1R, C12orf65, BICDL1, CABP1, KNTC1, MLEC, RNF10) 0.0787156403968717 184 0.0393041321188445 0.746181646486133 10072 0.24381769384175 4 4 0 -6.93159736208811 LTS-029 NA NA NA NA LTS-029 chr12 124399114 133245551 8846438 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, EP400, DHX37, FBRSL1, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, NA NA NA NA NA NA NA NA NA LTS-029 SCARB1, NCOR2) 0.0818460093055305 126 0.0392103841121484 0.80352237553839 4421 0.270710821678201 4 4 0 -6.77834322415758 LTS-029 NA NA NA NA LTS-029 chr12 133245552 133812039 566488 * c(ZNF605, ZNF891, ZNF268, PGAM5, ANKLE2, GOLGA3, POLE, CHFR, PXMP2, ANHX, ZNF10, ZNF140) 0.083734952608129 71 0.0287610848195961 0.732041276891252 1723 0.264664061870845 4 4 0 -6.77843316212688 LTS-029 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.602458487139867 11 0.0656579289679749 3 NA NA -5.76447988386905 LTS-029 chr13 19271620 19271676 57 * character(0) 0.46 1 NA 3.286 1 NA NA NA NA NA LTS-029 chr13 19271677 19801420 529744 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.448456898351203 14 0.0394982264172695 1.53627194051422 96 1.12334746420195 8 4 4 -7.02130052407676 LTS-029 chr13 19801421 20025375 223955 * c(ANKRD26P3, LINC00421, TPTE2) 0.368 1 NA 1.38540194849283 35 0.475832798471102 8 8 0 -5.76553446734692 LTS-029 chr13 20025376 20398310 372935 * c(MPHOSPH8, PSPC1, ZMYM5, TPTE2) 0.31243113414222 9 0.234709927357153 1.29036627967766 204 0.403632042253414 7 5 2 -6.733556463641 LTS-029 chr13 20398311 20411701 13391 * ZMYM5 0.459 1 NA 1.36340504002007 29 0.240029621529974 8 8 0 -5.76490434273091 LTS-029 chr13 20411702 21735998 1324297 * c(MIR4499, SAP18, GJB6, EEF1AKMT1, SKA3, LATS2, GJA3, GJB2, CRYL1, IL17D, XPO4, ZMYM2, IFT88, ZMYM5) 0.416259846045092 10 0.150911305813124 1.34113245541198 1094 0.344382882327854 7 4 3 -6.74735052194755 LTS-029 chr13 21735999 21746443 10445 * SKA3 0 1 NA 1.49532747477059 15 0.832071053513604 8 8 0 -5.76441988695184 LTS-029 chr13 21746444 22277288 530845 * c(SKA3, MICU2, FGF9, ZDHHC20, MIPEPP3, MRPL57) 0.260401614693624 9 0.221516427783083 1.23961904665597 269 0.521616481513792 7 5 2 -6.75955370998817 LTS-029 chr13 22277289 23869503 1592215 * c(LINC00424, FGF9, SGCG, BASP1P1) 0.448 1 NA 1.4456275071485 81 0.374414442830402 8 8 0 -5.76441663552607 LTS-029 chr13 23869504 24881184 1011681 * c(MIR2276, SACS-AS1, LINC00327, SPATA13-AS1, SPATA13, SACS, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1, TNFRSF19, SGCG) 0.464055854605688 15 0.0228519041615688 1.37721396544377 857 0.272482244433167 8 4 4 -8.39404914729586 LTS-029 chr13 24881185 24890050 8866 * c(SPATA13, C1QTNF9) 0.368 1 NA 1.68955352962653 5 1.26418716968651 9 9 0 -5.76441736508623 LTS-029 chr13 24890051 25741400 851350 * c(PARP4, SPATA13, C1QTNF9, TPTE2P6, ATP12A, PABPC3, CENPJ, RNF17, TPTE2P1) 0.283972438116488 41 0.167325263790137 1.3988975621549 860 0.860388110804787 8 6 2 -6.73729874256288 LTS-029 chr13 25741401 25744304 2904 * AMER2 0.476 1 NA 1.35573386276525 59 0.183451151416844 7 7 0 -5.76457438496143 LTS-029 chr13 25744305 27844693 2100389 * c(CDK8, WASF3, AMER2, USP12, SNORD102, GPR12, RASL11A, SHISA2, ATP8A2, RNF6, RPL21, SNORA27, MTMR6, NUP58) 0.439611840686387 14 0.128651949755238 1.38747925454804 1306 0.351257132470542 8 4 4 -6.7642961437827 LTS-029 chr13 27844694 28009183 164490 * c(GTF3A, RASL11A) 0 1 NA 1.37745208725426 81 0.787706267715023 8 8 0 -5.76479646247712 LTS-029 chr13 28009184 28623699 614516 * c(CDX2, MTIF3, GSX1, LNX2, FLT3, GTF3A, PDX1, ATP5EP2, POLR1D, URAD) 0.358893206996832 9 0.2013453362868 1.43298336097783 521 0.464487303193525 8 5 3 -6.73961023077248 LTS-029 chr13 28623700 28623759 60 * FLT3 0.453 1 NA 1.59729079497438 3 1.04500143540571 9 9 0 -5.7644101376051 LTS-029 chr13 28623760 31032946 2409187 * c(LINC00426, PAN3-AS1, LINC00297, MTUS2-AS1, FLT1, FLT3, MTUS2, PAN3, SLC46A3, HMGB1, LINC00544, POMP, UBL3, SLC7A1, KATNAL1) 0.438473829568185 17 0.109726397703293 1.38807018919657 1141 0.30816512182556 8 4 4 -6.77540223317341 LTS-029 chr13 31032947 31318308 285362 * c(USPL1, ALOX5AP, HMGB1) 0.479362660955059 5 0.010876580344943 1.19676498991932 171 0.315479752713554 6 3 3 -12.5215586231035 LTS-029 chr13 31318309 31531230 212922 * c(TEX26-AS1, LINC00398, TEX26, ALOX5AP, MEDAG) 0 1 NA 1.19597777668787 99 0.282343570815832 7 7 0 -5.77203984376524 LTS-029 chr13 31531231 41239880 9708650 * c(MIR548F5, MIR4305, MINOS1P1, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, FRY, LHFP, N4BP2L2, POSTN, HSPH1, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, STOML3, EEF1DP3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, ZAR1L, LINC00598, BRCA2, TRPC4, CCDC169, PROSER1, CCNA1, NA NA NA NA NA NA NA NA NA LTS-029 STARD13, N4BP2L1, DCLK1, KL) 0.332838721406445 88 0.0782466218419433 1.11259165905826 4503 0.370946921606471 6 4 2 -6.761143436782 LTS-029 NA NA NA NA LTS-029 chr13 41239881 46844627 5604747 * c(TPT1-AS1, MIR320D1, OR7E37P, VWA8-AS1, CPB2-AS1, TPTE2P5, MIR5006, SMIM2-IT1, SLC25A15, MRPS31, WBP4, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, ERICH6B, SPERT, VWA8, FOXO1, ZC3H13, SLC25A30, NUFIP1, SUGT1P3, SIAH3, RGCC, DNAJC15, GTF2F2, KCTD4, SERP2, LCP1, ENOX1, GPALPP1, TSC22D1-AS1, SNORA31, MIR621, TPT1, NAA16, COG3, KBTBD7, TNFSF11, TSC22D1, KBTBD6, EPSTI1, MTRF1 NA NA NA NA NA NA NA NA NA LTS-029 ) 0.338376004488017 65 0.0637787378665191 1.02581932000658 3229 0.306604981064685 6 4 2 -6.99518304903876 LTS-029 NA NA NA NA LTS-029 chr13 46844628 46952188 107561 * c(LINC00563, RUBCNL) NA 0 NA 1.02975541144266 113 0.258518890205185 5 NA NA -5.77062537066668 LTS-029 chr13 46952189 47127265 175077 * RUBCNL NA 0 NA 0.548 1 NA NA NA NA NA LTS-029 chr13 47127266 47325150 197885 * LRCH1 0.069 1 NA 0.782782108573263 147 0.17146401731829 4 4 0 -5.76443581259899 LTS-029 chr13 47325151 51603768 4278618 * c(LINC00462, MIR3613, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, LPAR6, TRIM13, DLEU1, RCBTB2, ARL11, ST13P4, ESD, DLEU7, CTAGE10P, FNDC3A, LRCH1, KCNRG, MLNR, MED4, GUCY1B2, HTR2A, KPNA3, MIR16-1, PHF11, RCBTB1, NUDT15, CYSLTR2, SPRYD7, RB1, RNASEH2B, CDADC1, CAB39L, SETDB2, EBPL, SUCLA2, DLEU2, ITM2B) 0.0777651215702294 38 0.0262620696359735 0.745724935538421 2114 0.828388212065909 4 4 0 -6.74292662639096 LTS-029 chr13 51603769 52027148 423380 * c(MIR5693, FAM124A, INTS6, GUCY1B2, LINC00371, SERPINE3) NA 0 NA 0.726369570097537 271 0.162126360635467 4 NA NA -5.82163371394955 LTS-029 chr13 52027149 52126646 99498 * INTS6 NA 0 NA 0.38 1 NA NA NA NA NA LTS-029 chr13 52126647 52391341 264695 * c(MIR4703, WDFY2, LINC00282, DHRS12) 0.163 1 NA 0.417361818709209 173 0.0865771236130497 2 2 0 -5.90794552487881 LTS-029 chr13 52391342 53625910 1234569 * c(MIR759, MRPS31P5, OLFM4, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, LINC00282, NEK5, ALG11, NEK3, PCDH8, VPS36, ATP7B, THSD1, CCDC70, UTP14C) 0.140799683968757 21 0.0560514219691339 0.437849416107436 1155 0.115169708178559 2 2 0 -6.80814262663848 LTS-029 chr13 53625911 54886224 1260314 * c(MIR1297, LINC00558, OLFM4) NA 0 NA 0.489832258519791 19 0.0401242223148844 2 NA NA -7.72710237824743 LTS-029 chr13 58206621 58299683 93063 * PCDH17 0.038 1 NA 1.15312307764894 87 0.433330246940667 6 6 0 -5.76473029222334 LTS-029 chr13 58299684 100518738 42219055 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, MIR548AN, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, NA NA NA NA NA NA NA NA NA LTS-029 LINC00410, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, SLITRK5, FBXL3, HS6ST3, OXGR1, PCDH17, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, MZT1, PCDH9, POU4F1, NDFIP2, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, PCDH20, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, LMO7DN, ACOD1, UCHL3, RNF219, BORA, TDRD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 DIAPH3, SLITRK6, STK24, SCEL, CLDN10, TM9SF2, TBC1D4) 0.0571662461896726 103 0.0432798436873139 1.08957475595041 6845 0.328430946027867 6 6 0 -6.86540029270526 LTS-029 NA NA NA NA LTS-029 chr13 100518739 100523135 4397 * CLYBL NA 0 NA 1.595 1 NA NA NA NA NA LTS-029 chr13 100523136 101182616 659481 * c(PCCA-AS1, CLYBL, PCCA, ZIC2, ZIC5, GGACT) 0.047417214526343 5 0.00277488738510232 1.40737591152584 277 0.593841867640607 7 7 0 -6.76594784151051 LTS-029 chr13 101182617 114839373 13656757 * c(LINC00552, MCF2L-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, LINC00565, LINC00443, COL4A2-AS1, NALCN-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, RASA3, MYO16, ATP11A, MCF2L, NALCN, GAS6, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, PCCA, BIVM, NA NA NA NA NA NA NA NA NA LTS-029 TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, CCDC168, GAS6-AS1, SLC10A2, SOX1, TFDP1, TPP2, LINC00460, FAM155A, KDELC1, CARS2, GRTP1, CUL4A, TMTC4, ABHD13, IRS2, GGACT, PROZ, ARHGEF7, TEX30, ITGBL1) 0.0565757122096735 158 0.0215941927164323 1.10009072990834 6044 0.412961922618882 6 6 0 -6.74577332734569 LTS-029 NA NA NA NA LTS-029 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.657 1 NA NA NA NA NA LTS-029 chr13 114897818 115064542 166725 * c(RASA3, UPF3A, CDC16) 0.0726236556335884 11 0.0230970285377303 0.875299170627086 155 0.308649718555095 4 4 0 -6.7804641375859 LTS-029 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.85330817522579 85 0.118518696890428 4 NA NA -5.77286814398437 LTS-029 chr14 19434116 20295510 861395 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.042 1 NA 1.2070301600047 103 0.366930335255749 7 7 0 -5.7781266618389 LTS-029 chr14 20295511 20444193 148683 * c(OR4N2, OR4K2, OR4K5, OR4K1, OR4K15) 0.173135790211657 9 0.135402178712161 1.30389757881768 109 0.917231128219929 7 6 1 -6.73359723062841 LTS-029 chr14 20444194 20444256 63 * OR4K15 NA 0 NA 0.901 1 NA NA NA NA NA LTS-029 chr14 20444257 22471922 2027666 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-029 TEP1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.0808193286203668 121 0.0313537753492325 0.772792577824414 3570 0.517493297405377 4 4 0 -6.73824302901973 LTS-029 NA NA NA NA LTS-029 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.234 1 NA NA NA NA NA LTS-029 chr14 22475772 22989520 513749 * character(0) 0.0789391197801886 19 0.02367716594389 0.945439623805841 612 0.281047332593272 4 4 0 -6.86603482918412 LTS-029 chr14 22989521 22990896 1376 * character(0) NA 0 NA 0.826 1 NA NA NA NA NA LTS-029 chr14 22990897 26916120 3925224 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, ADCY4, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, NA NA NA NA NA NA NA NA NA LTS-029 RBM23, DHRS4-AS1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.0742535146756875 129 0.0309902479816029 0.769465978633363 6520 0.247893979504508 4 4 0 -6.75761724963986 LTS-029 NA NA NA NA LTS-029 chr14 26916121 27377970 461850 * c(MIR4307, NOVA1) NA 0 NA 0.808244026143107 109 0.224346472268757 4 NA NA -5.76919378012359 LTS-029 chr14 28102519 28734303 631785 * LINC00645 0.364 1 NA 1.37195785899273 13 1.33871246984671 8 8 0 -5.76501055123473 LTS-029 chr14 28734304 34273043 5538740 * c(LOC100506071, MIR548AI, AP4S1, DTD2, COCH, FOXG1, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, LINC01551, ARHGAP5, G2E3, PRKD1, NPAS3, MIR624, NUBPL, ARHGAP5-AS1, AKAP6) 0.341119012416733 52 0.0441339487227718 1.08773027273092 2302 0.264514071452213 6 4 2 -6.78652792407094 LTS-029 chr14 34273044 34420256 147213 * c(EGLN3, NPAS3) 0.238 1 NA 1.35525148659007 116 0.465250933244156 7 7 0 -5.76568858496308 LTS-029 chr14 34420257 34561423 141167 * EGLN3 NA 0 NA 1.006 1 NA NA NA NA NA LTS-029 chr14 34561424 36986357 2424934 * c(PTCSC3, LINC00609, CFL2, BAZ1A, SPTSSA, RALGAPA1, SFTA3, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, SRP54, NKX2-1, BRMS1L, INSM2, KIAA0391) 0.341018167600193 26 0.110009202412274 1.01510500532152 1459 0.325121973181163 6 4 2 -6.85765639551538 LTS-029 chr14 36986358 36986433 76 * c(SFTA3, NKX2-1) NA 0 NA 1.505 1 NA NA NA NA NA LTS-029 chr14 36986434 38222269 1235836 * c(SLC25A21-AS1, MIR4503, MIPOL1, SFTA3, NKX2-8, FOXA1, PAX9, NKX2-1, SLC25A21) 0.282717808944205 15 0.143217217640099 1.17172240905907 641 0.454107087592514 7 5 2 -6.77742982128716 LTS-029 chr14 38222270 38222291 22 * character(0) 0.248 1 NA 2.913 1 NA NA NA NA NA LTS-029 chr14 38222292 38273922 51631 * character(0) 0.467 1 NA 1.63520551849442 33 0.479443174501168 9 9 0 -5.76443622567354 LTS-029 chr14 38273923 38724167 450245 * c(CLEC14A, SSTR1) 0.472404592642392 2 0.0134350288425443 1.50861143005362 164 0.349197198407618 8 4 4 -10.8885842763381 LTS-029 chr14 38724168 39867335 1143168 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, FBXO33, LINC00639, MIA2, PNN, GEMIN2) 0.459367366480993 3 0.0397156560229506 1.2598811528981 671 0.35468865203521 6 3 3 -7.33917452648617 LTS-029 chr14 39867336 39867340 5 * FBXO33 0 1 NA 5.892 1 NA NA NA NA NA LTS-029 chr14 39867341 47351428 7484088 * c(SNORD127, LINC00871, C14orf28, RPL10L, LRFN5, MDGA2, FKBP3, FAM179B, FBXO33, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB) 0.477451464943459 10 0.017425715352764 1.44225406669214 1079 0.415190750082777 8 4 4 -10.1657404632879 LTS-029 chr14 47351429 47389143 37715 * MDGA2 NA 0 NA 0.7 1 NA NA NA NA NA LTS-029 chr14 47389144 47770723 381580 * MDGA2 0.092 1 NA 0.91590080171648 55 0.372603093545753 5 5 0 -5.76665470936071 LTS-029 chr14 47770724 53107085 5336362 * c(MIR548Y, LINC00648, NA, FRMD6-AS2, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, FRMD6-AS1, ABHD12B, MDGA2, LINC01599, NID2, KLHDC2, ATP5S, LINC01588, LINC00640, GPR137C, ARF6, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, DNAAF2, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, SOS2, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.438297522942281 71 0.090287938680797 1.31440174873222 3257 0.378503775594413 7 4 3 -6.79786894425858 LTS-029 chr14 53107086 53109971 2886 * ERO1A 0 1 NA 1.23060778142247 59 0.782766117969641 7 7 0 -5.76441476838616 LTS-029 chr14 53109972 53324324 214353 * c(FERMT2, ERO1A, PSMC6, GNPNAT1, STYX) 0.296148638836119 3 0.257777681992319 1.28980462333175 367 0.392152239873688 7 5 2 -6.73392775873867 LTS-029 chr14 53324325 66975373 13651049 * c(KTN1-AS1, OTX2-AS1, MIR4308, LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, CNIH1, GPHN, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, WDR89, L3HYPDH, SOCS4, NAA30, GPHB5, PPP1R36, SLC38A6, C14orf37, TMEM30B, ESR2, ATG14, ZBTB1, DAAM1, SAMD4A, SYNE2, FNTB, FUT8, PLEKHG3, GCH1, TIMM9, KCNH5, GMFB, GPX2, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, TBPL2, TOMM20L, KTN1, LGALS3, NA NA NA NA NA NA NA NA NA LTS-029 FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, DACT1, JKAMP, DHRS7, SIX4, TMEM260, PPM1A, FBXO34, C14orf105, PPP2R5E, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, RHOJ, TRMT5, ARID4A, RTN1, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, BMP4, SNAPC1, SPTB, CCDC175, ZBTB25, DDHD1, SGPP1, SYT16, CHURC1, MAPK1IP1L, AKAP5, KIAA0586, DLGAP5) 0.0815752375835292 100 0.0435322752667373 0.750476381683328 9002 0.310172876752821 4 4 0 -6.90183339783898 LTS-029 NA NA NA NA LTS-029 chr14 66975374 67017823 42450 * GPHN NA 0 NA 0.451 1 NA NA NA NA NA LTS-029 chr14 67017824 67831733 813910 * c(GPHN, FAM71D, EIF2S1, ATP6V1D, MPP5) 0.165250311971444 5 0.0331436268383531 0.452829179318717 440 0.104205058525996 2 2 0 -7.19020412061084 LTS-029 chr14 67831734 67841111 9378 * EIF2S1 NA 0 NA 1.185 1 NA NA NA NA NA LTS-029 chr14 67841112 68353923 512812 * c(VTI1B, RDH12, TMEM229B, EIF2S1, ZFYVE26, PLEK2, ARG2, RDH11, PIGH, PLEKHH1, RAD51B) 0.0467187997681331 20 0.0201755453849195 1.05437208259496 1079 0.305271163726612 6 6 0 -6.84432953157975 LTS-029 chr14 68353924 68713810 359887 * RAD51B NA 0 NA 0.675 1 NA NA NA NA NA LTS-029 chr14 68713811 76967623 8253813 * c(MED6, LOC100289511, SYNJ2BP-COX16, MIR4505, MIR4709, BATF, NPC2, ACOT2, TMED10, C14orf1, IFT43, JDP2, ISCA2, ACOT4, ADAM21P1, LOC145474, PTGR2, FAM161B, ACTN1-AS1, DLST, ERH, ESRRB, PCNX1, TTLL5, TTC9, FOS, SIPA1L1, DCAF4, MLH3, PROX2, ADAM20P1, SNORD56B, VSX2, HEATR4, PLEKHD1, LTBP2, MAP3K9, ALDH6A1, COQ6, FCF1, COX16, PGF, ZFYVE1, EXD2, VRTN, SYNJ2BP, SLC39A9, FLVCR2, GPATCH2L, YLPM1, PSEN1, NA NA NA NA NA NA NA NA NA LTS-029 CCDC177, GALNT16, ZNF410, ABCD4, RBM25, RAD51B, SMOC1, ACOT1, ACOT6, SRSF5, SYNDIG1L, SLC8A3, SLC10A1, ZFP36L1, TGFB3, LINC01220, ZC2HC1C, BBOF1, DPF3, DNAL1, RPS6KL1, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, EIF2B2, PAPLN, ELMSAN1, LIN52, NEK9, PNMA1, ENTPD5, RGS6, ACYP1, SUSD6, AREL1) 0.0807904346071051 139 0.0357153273899654 0.744462402153673 8290 0.48825651236154 4 4 0 -6.7933267148525 LTS-029 NA NA NA NA LTS-029 chr14 76967624 77228516 260893 * c(ESRRB, VASH1) NA 0 NA 1.268 1 NA NA NA NA NA LTS-029 chr14 77228517 77723505 494989 * c(LRRC74A, VASH1, ANGEL1, ZDHHC22, TMEM63C, IRF2BPL, CIPC) 0.066348389261746 15 0.0680207951396378 1.07458359610691 721 0.29710244618749 6 6 0 -6.75431173489409 LTS-029 chr14 77723506 77741971 18466 * c(MIR1260A, POMT2, TMEM63C, NGB) 0.067 1 NA 1.0936072989089 124 0.344514618344156 6 6 0 -5.7644481430308 LTS-029 chr14 77741972 91929203 14187232 * c(SNORA11B, DIO2-AS1, LINC00911, AHSA1, PTPN21, FOXN3, NOXRED1, TTC8, ISM2, CEP128, TTC7B, SAMD15, EML5, DIO2, SNW1, FLRT2, GALC, TMED8, C14orf178, LOC283585, LINC01146, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, FOXN3-AS1, LINC00642, CCDC88C, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, KCNK13, PSMC1, ADCK1, VIPAS39, SEL1L, SNORA79, TSHR, ZC3H14, C14orf159, CALM1, GPR68, SLIRP, GPR65, STON2, ALKBH1, EFCAB11, RPS6KA5, NA NA NA NA NA NA NA NA NA LTS-029 NRXN3, SPTLC2) 0.0518933376488971 122 0.0282213810564479 1.07323688220335 5480 0.412209903069081 6 6 0 -6.81572120079299 LTS-029 NA NA NA NA LTS-029 chr14 91929204 91931607 2404 * PPP4R3A NA 0 NA 0.725 1 NA NA NA NA NA LTS-029 chr14 91931608 92601837 670230 * c(FBLN5, TC2N, ATXN3, NDUFB1, CPSF2, PPP4R3A, CATSPERB, TRIP11) 0.0631684473997107 21 0.0262630466444322 0.956841371243711 884 0.312509760984774 5 5 0 -6.73504500303543 LTS-029 chr14 92601838 92604551 2714 * CPSF2 NA 0 NA 1.282 1 NA NA NA NA NA LTS-029 chr14 92604552 99182790 6578239 * c(LOC100129345, MIR3173, TUNAR, PAPOLA, CHGA, SERPINA3, AK7, IFI27L1, SLC24A4, GSC, SERPINA12, PRIMA1, SYNE3, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, DICER1-AS1, SERPINA5, SERPINA10, GLRX5, GSKIP, ASB2, SERPINA1, SERPINA4, CPSF2, ATG2B, UBR7, BTBD7, LGMN, C14orf132, DDX24, UNC79, PPP4R4, BDKRB1, BDKRB2, NA NA NA NA NA NA NA NA NA LTS-029 MOAP1, VRK1, OTUB2, LINC00341, CLMN, RIN3, TCL1A, IFI27L2, GON7, SERPINA6, FAM181A, TCL1B, GOLGA5) 0.0560362912624146 128 0.0313212170783904 1.09204913789459 4929 0.429364689523425 6 6 0 -6.74359646347509 LTS-029 NA NA NA NA LTS-029 chr14 99182791 99183403 613 * C14orf177 NA 0 NA 0.793 1 NA NA NA NA NA LTS-029 chr14 99183404 100792093 1608690 * c(MIR5698, CYP46A1, SLC25A29, DEGS2, EML1, C14orf177, SLC25A47, CCDC85C, MIR345, EVL, BCL11B, YY1, SETD3, HHIPL1, CCNK) 0.0694812053686528 24 0.0365070719771913 0.796261293654366 1464 0.497348771573028 4 4 0 -6.76799087380656 LTS-029 chr14 100792094 100795139 3046 * SLC25A47 0.092 1 NA 0.850373289577028 19 0.206190367952185 4 4 0 -5.76468721577892 LTS-029 chr14 100795140 105351673 4556534 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR4710, MIR2392, SIVA1, CKB, TRMT61A, TDRD9, ANKRD9, ADSSL1, LINC00239, LINC00637, DIO3, DYNC1H1, LINC00638, EIF5, AKT1, RCOR1, PPP1R13B, KIF26A, SLC25A47, LINC00523, CEP170B, HSP90AA1, ASPG, KLC1, RTL1, TMEM179, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, NA NA NA NA NA NA NA NA NA LTS-029 MARK3, MIR323A, MIR337, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, CINP, PPP2R5C, MEG3, ZNF839, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, INF2, RD3L, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, WARS, XRCC3, SNORD113-1, SNORD113-2, SNORD113-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MIR758, MIR668, MIR770, ZFYVE21, MEG8, WDR25, AMN, APOPT1, DLK1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TECPR2) 0.0840025629924204 118 0.0296035663895638 0.76558255889899 5505 0.217491705152255 4 4 0 -6.79105069616102 LTS-029 NA NA NA NA LTS-029 chr14 105351674 105354293 2620 * CEP170B 0.171 1 NA 0.769734093270659 45 0.116311025038276 4 4 0 -5.76445354000401 LTS-029 chr14 105354294 105412009 57716 * c(AHNAK2, PLD4, CEP170B) 0.137684182886904 25 0.105096416050533 0.732690561953464 296 0.231014035001864 3 3 0 -6.83122751897212 LTS-029 chr14 105412010 105413204 1195 * AHNAK2 0.054 1 NA 0.683975507816559 7 0.238458042630644 3 3 0 -5.76453489694543 LTS-029 chr14 105413205 105880222 467018 * c(AHNAK2, C14orf79, PACS2, NUDT14, BRF1, GPR132, JAG2, CDCA4, TEX22, BTBD6) 0.0861703019776758 23 0.02489852925161 0.781364507947466 1096 0.189477149897993 4 4 0 -6.79383072532658 LTS-029 chr14 105880223 105904960 24738 * MTA1 NA 0 NA 1.166 1 NA NA NA NA NA LTS-029 chr14 105904961 106406008 501048 * c(CRIP1, CRIP2, ELK2AP, C14orf80, TMEM121, MTA1, FAM30A) 0.0584366089790567 41 0.0744663043785904 1.21196394916494 720 0.80213642211099 6 6 0 -6.73745222011422 LTS-029 chr14 106406009 106436032 30024 * ADAM6 NA 0 NA 0.837 1 NA NA NA NA NA LTS-029 chr14 106436033 106725546 289514 * ADAM6 0.180476889027271 7 0.14047623083131 0.794121131446615 119 0.575232760305513 6 5 1 -6.80916370453546 LTS-029 chr14 106725547 106725558 12 * character(0) 0.278 1 NA 2.611 1 NA NA NA NA NA LTS-029 chr14 106725559 106805381 79823 * LINC00226 0.288886011475233 12 0.0640347916796373 0.986052938938812 48 1.57812565848592 4 3 1 -6.73403299544418 LTS-029 chr14 106805382 106805386 5 * character(0) 0.184 1 NA 0.579374605608033 2 0.234759451353934 3 3 0 -5.76441032699702 LTS-029 chr14 106805387 107013436 208050 * LINC00221 0.0665249954992504 3 0.063663176169588 1.10225332744111 97 0.535027975028946 5 5 0 -6.74314473081584 LTS-029 chr14 107013437 107034757 21321 * character(0) NA 0 NA 2.003 1 NA NA NA NA NA LTS-029 chr14 107034758 107179263 144506 * character(0) 0.303217265765482 7 0.208842387596826 1.71762034154675 70 0.86308315551477 10 7 3 -6.73458601694318 LTS-029 chr14 107179264 107198951 19688 * character(0) NA 0 NA 1.087 1 NA NA NA NA NA LTS-029 chr14 107198952 107282988 84037 * character(0) 0.244352604480419 2 0.0197989898732233 0.988529331602607 42 0.262017958485875 5 4 1 -6.78056077731555 LTS-029 chr14 107282989 107283157 169 * character(0) NA 0 NA 0.865157147763174 5 0.0735676559365595 5 NA NA -5.7645743363747 LTS-029 chr15 20169987 20448077 278091 * character(0) 0.281 1 NA 0.996589396891601 27 1.08665253386017 5 5 0 -5.76472934816898 LTS-029 chr15 20448078 20663072 214995 * c(HERC2P3, CHEK2P2) 0.315182984485371 13 0.0808072254956677 1.03877628256906 81 0.525675682771031 7 5 2 -6.7614041383699 LTS-029 chr15 20663073 20874943 211871 * c(HERC2P3, NBEAP1, GOLGA6L6, GOLGA8CP) NA 0 NA 0.697 1 NA NA NA NA NA LTS-029 chr15 20874944 22369022 1494079 * c(POTEB, LINC01193, OR4M2, NF1P2, NBEAP1, LOC646214, CXADRP2, LOC727924) 0.347957286901222 9 0.0732461603089199 0.768901750482399 94 0.737399101823077 3 2 1 -6.83500292004605 LTS-029 chr15 22369023 22413825 44803 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.338202524501697 5 0.0373403267259407 1.43609713569195 39 0.916835590127934 12 8 4 -6.74271715964634 LTS-029 chr15 22413826 22413879 54 * OR4N3P NA 0 NA 0.593 1 NA NA NA NA NA LTS-029 chr15 22413880 30503046 8089167 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-029 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, LOC100289656, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, DKFZP434L187, LOC283683, GOLGA6L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, OR4N3P, HERC2P2, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, MAGEL2, NSMCE3, ATP10A, PDCD6IPP2, REREP3, GOLGA8S, GOLGA8T, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.405624563409617 53 0.127741347884549 0.799874590236988 3247 0.242992807053805 4 2 2 -6.77087773122635 LTS-029 NA NA NA NA LTS-029 chr15 30503047 30650508 147462 * DKFZP434L187 NA 0 NA 0.118 1 NA NA NA NA NA LTS-029 chr15 30650509 30664587 14079 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.326386367109049 47 0.142490108717522 1 NA NA -5.77089914137955 LTS-029 chr15 30664588 30665163 576 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.643 1 NA NA NA NA NA LTS-029 chr15 30665164 35375606 4710443 * c(WHAMMP1, LOC100288637, MIR1233-2, TMCO5B, LOC100996255, CHRM5, CHRNA7, OTUD7A, PGBD4, FAN1, GOLGA8A, LPCAT4, NUTM1, DKFZP434L187, GREM1, LOC283710, FMN1, HERC2P10, MIR211, TRPM1, GOLGA8B, EMC4, KLF13, MTMR10, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, GOLGA8O, KATNBL1, CHRFAM7A, ARHGAP11B, AQR, ARHGAP11A, SLC12A6) 0.387638596424457 101 0.156649572973792 0.761252202561208 3422 0.286704360851121 4 2 2 -6.79087607572321 LTS-029 chr15 35375607 35375874 268 * character(0) 0.473 1 NA 0.594819368667373 5 0.087185434563349 3 3 0 -5.76444411042351 LTS-029 chr15 35375875 41865227 6489353 * c(SRP14-AS1, ANKRD63, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, OIP5, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, EXD1, FSIP1, RHOV, BAHD1, RTF1, RPAP1, GCHFR, RPUSD2, FAM98B, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, MEIS2, EIF2AK4, NDUFAF1, NUSAP1, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, C15orf62, C15orf56, PHGR1, SPINT1, SRP14, NA NA NA NA NA NA NA NA NA LTS-029 BUB1B, THBS1, ANP32AP1, OIP5-AS1, TYRO3, CHAC1, C15orf41, ZFYVE19, DISP2, DPH6, C15orf57, KNSTRN, BMF) 0.443980738383789 111 0.0957604505109697 0.740161805834873 5367 0.179814185661184 4 2 2 -7.15527640421298 LTS-029 NA NA NA NA LTS-029 chr15 41865228 41871269 6042 * TYRO3 0.441 1 NA 1.30536188206608 42 0.557270828612771 7 7 0 -5.7644141174324 LTS-029 chr15 41871270 41871419 150 * TYRO3 NA 0 NA 0.869 1 NA NA NA NA NA LTS-029 chr15 41871420 42363480 492061 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, PLA2G4D, EHD4, SPTBN5, MIR626, TYRO3, JMJD7-PLA2G4B) 0.439858800291038 26 0.0375366282654484 0.78219280945287 1304 0.193021523368484 4 2 2 -6.88932497144524 LTS-029 chr15 42363481 42364143 663 * PLA2G4D 0.45 1 NA 0.887451621161201 11 0.155664616169741 5 5 0 -5.76448694553751 LTS-029 chr15 42364144 45401796 3037653 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, TERB2, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, UBR1, PATL2, EPB42, VPS39, CCNDBP1, PLA2G4F, LRRC57, HYPK, GANC, TMEM87A, TUBGCP4, PLA2G4D, PDIA3, MAP1A, MFAP1, CATSPER2P1, DUOX2, CTDSPL2, CKMT1A, HAUS2, B2M, STARD9, SERINC4, ZNF106, EIF3J-AS1, SORD, MIR627, TP53BP1, PIN4P1, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, SNAP23, NA NA NA NA NA NA NA NA NA LTS-029 TGM5, PPIP5K1, LCMT2) 0.153802282379464 9 0.205692191825013 0.74461018493029 5463 0.220116527411037 4 4 0 -6.91496964642605 LTS-029 NA NA NA NA LTS-029 chr15 45401797 45567568 165772 * c(DUOXA2, DUOX2, DUOX1, SHF, DUOXA1, SLC28A2) 0.49 1 NA 0.775191577598589 491 0.146407818622068 4 4 0 -5.76510815822585 LTS-029 chr15 45567569 51294832 5727264 * c(MIR147B, GABPB1-AS1, DCAF13P3, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, NA, DUT, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, HDC, USP50, SHC4, CTXN2, MYEF2, TRPM7, FLJ10038, DTWD1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, ATP8B4, SEMA6D, C15orf48, SPPL2A, USP8, SLC28A2, COPS2, SECISBP2L) 0.421377662456041 48 0.132025780579358 0.74433190678778 4005 0.200073339562627 4 2 2 -6.96406403979555 LTS-029 chr15 51294833 51295934 1102 * AP4E1 0.467 1 NA 0.71602793930947 23 0.224330413424823 4 4 0 -5.76452041126215 LTS-029 chr15 51295935 52013171 717237 * c(MIR4713, CYP19A1, DMXL2, AP4E1, SCG3, GLDN, TNFAIP8L3) 0.137870608134014 9 0.231954198065049 0.787813723936479 733 0.321892550457313 4 4 0 -6.77252102741838 LTS-029 chr15 52013172 52030020 16849 * c(LYSMD2, SCG3) 0.48 1 NA 0.790733494865706 27 0.191459739655187 4 4 0 -5.76442600030079 LTS-029 chr15 52030021 58477411 6447391 * c(LOC100129973, BCL2L10, MIR1266, DYX1C1-CCPG1, MYZAP, GNB5, ARPP19, LEO1, GCOM1, LOC145783, C15orf65, DYX1C1, LYSMD2, WDR72, PYGO1, PRTG, LINC00926, TMOD3, TMOD2, ONECUT1, AQP9, TEX9, UNC13C, MYO5A, NEDD4, RSL24D1, ZNF280D, MNS1, MYO5C, MAPK6, FAM214A, RAB27A, RFX7, MIR628, TCF12, POLR2M, CGNL1, ALDH1A2, CCPG1, PIGB) 0.43739079000683 77 0.0970072102371989 0.755090927439458 4242 0.206685359199723 4 2 2 -6.88282652585185 LTS-029 chr15 58477412 60824130 2346719 * c(MIR2116, ADAM10, FAM81A, FOXB1, GTF2A2, ANXA2, AQP9, LIPC, MYO1E, FAM63B, RNF111, RORA, BNIP2, HSP90AB4P, ICE2, SLTM, ALDH1A2, CCNB2, GCNT3, LDHAL6B) 0.465446341060275 67 0.027459595744698 0.702553519267333 2060 0.182305152389033 4 2 2 -8.50087397852871 LTS-029 chr15 60824131 60848950 24820 * RORA NA 0 NA 0.823 1 NA NA NA NA NA LTS-029 chr15 60848951 63088477 2239527 * c(C2CD4A, MGC15885, C2CD4B, VPS13C, RORA, TLN2) 0.395360711511633 6 0.185949186607525 0.801955332881171 925 0.212610234027978 4 2 2 -6.75787178805078 LTS-029 chr15 63088478 63089347 870 * TLN2 NA 0 NA 0.693 1 NA NA NA NA NA LTS-029 chr15 63089348 66188199 3098852 * c(USP3-AS1, MIR1272, MIR4511, PDCD7, DENND4A, CLPX, LACTB, MTFMT, SLC51B, ZNF609, DAPK2, FBXL22, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, MIR190A, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, PPIB, DPP8, PARP16, IGDCC4, SNX1, TPM1, CA12, SNX22, PIF1, PLEKHO2, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101, USP3) 0.455277801978521 81 0.0486796057127179 0.723316847178627 4453 0.167169426342214 4 2 2 -7.43789561591865 LTS-029 chr15 66188200 77241542 11053343 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4311, MIR4312, MIR4313, IQCH-AS1, MIR4513, SCAMP2, SNUPN, FEM1B, SNAPC5, CORO2B, ARID3B, DIS3L, CLK3, SENP8, HIGD2B, TMEM266, CSK, DRAIC, C15orf61, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, LCTL, ETFA, ITGA11, SPESP1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, NA NA NA NA NA NA NA NA NA LTS-029 GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, SCAPER, PKM, PML, LRRC49, PAQR5, RPP25, COMMD4, TIPIN, CLN6, ZWILCH, UACA, IMP3, LARP6, GOLGA6B, MAP2K1, MAP2K5, C15orf39, THAP10, PARP6, FAM219B, ISLR2, PTPN9, BBS4, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, PPCDC, CELF6, RPL4, RPLP1, STRA6, IQCH, ISL2, GOLGA6C, GOLGA6D, SCARNA14, FBXO22-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MIR629, MIR630, MIR631, TLE3, LOC729739, TYRO3P, NOX5, NEIL1, AAGAB, LMAN1L, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, CD276, ANP32A, ADPGK, MEGF11, SEMA7A, UBL7, PIAS1, CALML4, UBE2Q2, COX5A, STOML1, KIF23) 0.428215938180481 138 0.1133893757555 0.762905208837605 9736 0.203870464121259 4 2 2 -6.86048626158246 LTS-029 NA NA NA NA LTS-029 chr15 77241543 77335090 93548 * c(RCN2, PSTPIP1) 0 1 NA 0.782223953996785 151 0.338659219078215 4 4 0 -5.76441525583335 LTS-029 chr15 77335091 78288799 953709 * c(TSPAN3, HMG20A, TBC1D2B, LINGO1-AS1, LOC645752, PEAK1, LINC00597, LINGO1, LOC91450) 0.284925129915393 9 0.219216217465771 0.779711358126332 599 0.28011034507325 4 3 1 -6.7335367083935 LTS-029 chr15 78288800 78288848 49 * TBC1D2B 0.48 1 NA 0.615 1 NA NA NA NA NA LTS-029 chr15 78288849 80414173 2125325 * c(ST20-MTHFS, MIR5003, CIB2, MTHFS, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, CTSH, TBC1D2B, ACSBG1, KIAA1024, TMED3, ST20-AS1, IDH3A, IREB2, ANKRD34C, ST20, MIR184, ZFAND6, DNAJA4, PSMA4, RASGRF1, BCL2A1, SH2D7, LOC646938, ANKRD34C-AS1, WDR61) 0.420339015295081 54 0.113182371094111 0.753105719382985 2127 0.224482560461082 4 2 2 -6.77561899425502 LTS-029 chr15 80414174 80423923 9750 * ZFAND6 0 1 NA 0.723985744145153 15 0.39241134879953 4 4 0 -5.76465692395296 LTS-029 chr15 80423924 80855653 431730 * c(FAH, LINC00927, ZFAND6, ARNT2) 0.475916519627155 4 0.0579108510269592 0.774426440768206 217 0.19107099638976 4 2 2 -7.23957085463615 LTS-029 chr15 80855654 80866364 10711 * ARNT2 NA 0 NA 1.14 1 NA NA NA NA NA LTS-029 chr15 80866365 81666550 800186 * c(MIR4514, CFAP161, MESDC2, TMC3, IL16, CEMIP, ABHD17C, MESDC1, MIR549A, STARD5, ARNT2) 0.327004115144698 15 0.0360889113691384 1.09365911862257 1086 0.224157238901891 6 4 2 -6.96532918965956 LTS-029 chr15 82334086 83503620 1169535 * c(NA, UBE2Q2P2, NA, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, ADAMTS7P1, GOLGA6L9, CPEB1, GOLGA6L10, SCARNA15, EFL1, AP3B2, MEX3B) 0.463097967897068 7 0.031661904403813 1.39987813868887 762 0.340970685573817 8 4 4 -7.66828593811192 LTS-029 chr15 83503621 83517694 14074 * character(0) NA 0 NA 1.007 1 NA NA NA NA NA LTS-029 chr15 83517695 86290512 2772818 * c(UBE2Q2L, LINC00933, MIR4515, AKAP13, C15orf40, SEC11A, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, HDGFRP3, PDE8A, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, SH3GL3, BNC1, EFTUD1P1, FAM103A1, WDR73, SLC28A1, HOMER2, ZNF592) 0.329645775924091 68 0.090038186952789 1.04676686926584 2118 0.351317629503781 6 4 2 -6.81728816174428 LTS-029 chr15 86290513 89007988 2717476 * c(MIR1276, AKAP13, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.326933781712183 14 0.0553095683552887 1.19204081502562 747 0.387119938771915 7 5 2 -6.87477448389052 LTS-029 chr15 89007989 89007992 4 * MRPL46 NA 0 NA 0.948 1 NA NA NA NA NA LTS-029 chr15 89007993 94945719 5937727 * c(LINC00930, MIR1179, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, C15orf32, HAPLN3, MESP2, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, MIR7-2, MIR9-3, MAN2A2, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, DET1, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, NA NA NA NA NA NA NA NA NA LTS-029 RLBP1, BLM, AEN, CRTC3, MRPS11, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.339194367381562 134 0.0903367756043813 1.08142701539763 5438 0.276625427978505 6 4 2 -6.78663300514226 LTS-029 NA NA NA NA LTS-029 chr15 94945720 95023625 77906 * MCTP2 NA 0 NA 1.02000280687738 59 0.204121876590017 5 NA NA -5.7700208148205 LTS-029 chr15 96831249 97328518 497270 * c(MIR1469, SPATA8-AS1, SPATA8, NR2F2-AS1, NR2F2) 0.232 1 NA 1.52656818258248 157 0.388399221170326 8 8 0 -5.77006622867078 LTS-029 chr15 97328519 99482594 2154076 * c(MIR4714, SPATA8, FAM169B, IGF1R, ARRDC4, LINC00923) 0.287034386695935 21 0.0784737748125661 1.422731069793 436 0.426089059905817 8 6 2 -6.75931912675754 LTS-029 chr15 99482595 99544580 61986 * c(PGPEP1L, IGF1R) NA 0 NA 1.75551658764284 199 0.446557736456597 10 NA NA -5.76444082361469 LTS-029 chr15 99544581 99645402 100822 * c(PGPEP1L, SYNM) NA 0 NA 1.184 1 NA NA NA NA NA LTS-029 chr15 99645403 102516492 2871090 * c(FAM138E, LOC100507472, TARSL2, LRRC28, ASB7, LYSMD4, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, OR4F4, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3) 0.247853789435671 104 0.0904943681997809 1.37572506383083 2411 1.13522522968675 9 7 2 -6.76798573612442 LTS-029 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.931 1 NA NA NA NA NA LTS-029 chr16 81704 96405 14702 * character(0) 0.493 1 NA 0.71871989639725 4 0.330793364504187 4 4 0 -5.76503294991893 LTS-029 chr16 96406 128179 31774 * c(MPG, POLR3K, RHBDF1, SNRNP25) 0.323617971603786 13 0.0582545255202524 1.00695010280874 213 0.231981994763027 7 5 2 -6.80839067060865 LTS-029 chr16 128180 128224 45 * MPG NA 0 NA 0.908 1 NA NA NA NA NA LTS-029 chr16 128225 129173 949 * MPG NA 0 NA 0.631 1 NA NA NA NA NA LTS-029 chr16 129174 136888 7715 * c(MPG, NPRL3) 0.422 1 NA 0.710162233995899 31 0.0977128225921487 4 4 0 -5.7692424683716 LTS-029 chr16 136889 2672816 2535928 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-029 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, CEMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 METRN, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.444891694959633 273 0.0941771848204353 0.777366668786935 8005 0.235949494329354 4 2 2 -6.77560732900123 LTS-029 NA NA NA NA LTS-029 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.218 1 NA NA NA NA NA LTS-029 chr16 2692191 2747930 55740 * c(ERVK13-1, KCTD5, FLJ42627) 0.44 1 NA 0.533966190225867 77 0.285894310423871 3 3 0 -5.77336837805788 LTS-029 chr16 2747931 11690341 8942411 * c(LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, CLUAP1, CLEC16A, MGRN1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, UBN1, CDIP1, NA NA NA NA NA NA NA NA NA LTS-029 HMOX2, C16orf96, PRSS41, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, PRM1, PRM2, NMRAL1, PRM3, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, TNP2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, LITAF, SEC14L5) 0.439658945357102 215 0.0976831167921959 0.773726192225932 7191 0.414067664131992 4 2 2 -6.76239914245799 LTS-029 NA NA NA NA LTS-029 chr16 11690342 11769766 79425 * SNN NA 0 NA 0.625 1 NA NA NA NA NA LTS-029 chr16 11769767 11859341 89575 * c(ZC3H7A, TXNDC11, SNN) 0.461230779062308 10 0.0363892536029221 0.66867686250799 242 0.159749709715303 4 2 2 -7.45867449059238 LTS-029 chr16 11859342 11979087 119746 * c(RSL1D1, ZC3H7A, GSPT1, BCAR4) 0.409 1 NA 0.669322999299681 165 0.142869239985116 3 3 0 -5.78567169967201 LTS-029 chr16 11979088 12009852 30765 * GSPT1 0 1 NA 0.643123291882557 66 0.208352476136844 3 3 0 -5.76502172436402 LTS-029 chr16 12009853 12021242 11390 * GSPT1 NA 0 NA 0.836 1 NA NA NA NA NA LTS-029 chr16 12021243 14968958 2947716 * c(MIR365A, MIR4718, ERCC4, NOMO1, PARN, BFAR, CPPED1, MIR193B, MKL2, TNFRSF17, NPIPA3, SHISA9, ABCC6P2, PLA2G10, SNX29) 0.419432660303506 24 0.0524154944455455 0.783713941487002 827 0.222913921864301 4 2 2 -6.73332059805744 LTS-029 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 0.996 1 NA NA NA NA NA LTS-029 chr16 15068593 15123936 55344 * PDXDC1 0.235207913122533 6 0.0303737825544772 1.05440333036429 113 0.209044215134414 5 4 1 -6.74972616437476 LTS-029 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.686 1 NA NA NA NA NA LTS-029 chr16 15125636 24918048 9792413 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, ITPRIPL2, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, MPV17L, PDZD9, ANKS4B, TNRC6A, GP2, NOMO2, EEF2K, PKD1P1, ACSM2B, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, NOMO3, ABCC1, MYH11, NDUFAB1, NA NA NA NA NA NA NA NA NA LTS-029 METTL9, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST2) 0.408847172371399 136 0.124081707566045 0.77027509227029 7936 0.278213479255851 4 2 2 -6.76450085941589 LTS-029 NA NA NA NA LTS-029 chr16 24918049 24919450 1402 * SLC5A11 NA 0 NA 0.707447970515207 13 0.145661488495653 4 NA NA -5.76483624886884 LTS-029 chr16 24919451 24920258 808 * SLC5A11 NA 0 NA 0.41 1 NA NA NA NA NA LTS-029 chr16 24920259 25043277 123019 * c(SLC5A11, ARHGAP17, LOC554206) 0.177 1 NA 0.457739670795522 133 0.126369297094351 2 2 0 -5.76478834098908 LTS-029 chr16 25043278 28608392 3565115 * c(LCMT1-AS2, SGF29, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, IL21R, LCMT1, LOC554206, APOBR, SULT1A2, KDM8, HS3ST4) 0.149155306307651 39 0.0722469991064822 0.448230076878928 1609 0.140265892766248 2 2 0 -6.77085835240232 LTS-029 chr16 28608393 28734890 126498 * SULT1A1 0.185774232640344 2 0.045254833995939 0.310079914013569 89 0.0925882085009849 1 1 0 -6.98719924208299 LTS-029 chr16 28734891 28834303 99413 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-029 chr16 28834304 29150785 316482 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.137472465043808 8 0.0415260245422761 0.469676034821704 814 0.123103956906255 2 2 0 -6.74997455816501 LTS-029 chr16 29150786 29150797 12 * character(0) NA 0 NA 0.29 1 NA NA NA NA NA LTS-029 chr16 29150798 29323734 172937 * SNX29P2 NA 0 NA 0.993 1 NA NA NA NA NA LTS-029 chr16 29323735 29676230 352496 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN, SULT1A3, SLC7A5P1) 0.48 1 NA 0.603981404097126 113 0.286593555392327 3 3 0 -5.76600180481094 LTS-029 chr16 29676231 29681377 5147 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN) NA 0 NA 0.621681327757684 84 0.264328997091475 3 NA NA -5.76441084831025 LTS-029 chr16 29681378 31580530 1899153 * c(MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, NA NA NA NA NA NA NA NA NA LTS-029 TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.410199669562601 55 0.14267599327581 0.757002297924914 5382 0.182752725465672 4 2 2 -6.78004496613484 LTS-029 NA NA NA NA LTS-029 chr16 31580531 32890081 1309551 * c(CLUHP3, ZNF267, ZNF720, SLC6A10P, LOC390705, YBX3P1, NA, TP53TG3D) 0.394 1 NA 0.692767127540282 269 0.188211263458421 3 3 0 -6.03178940635633 LTS-029 chr16 32890082 33961325 1071244 * c(SLC6A10P, LOC390705, LINC00273) 0.306059967708498 15 0.111767275217408 0.904529695031699 181 0.489167559961662 4 3 1 -6.80074853595425 LTS-029 chr16 33961326 33962387 1062 * LINC00273 0.364073802701109 60 0.0881221209009996 1.69629043581056 82 1.11370871482424 3 2 1 -6.73361961906265 LTS-029 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.795 1 NA NA NA NA NA LTS-029 chr16 33965501 34267251 301751 * character(0) 0.320231731172528 5 0.228692588423849 0.636160363992906 43 0.939666585741349 4 3 1 -6.75324930967143 LTS-029 chr16 34267252 34682380 415129 * c(LINC01566, UBE2MP1) NA 0 NA 0.820305640394764 97 0.204128552266741 4 NA NA -5.77611875871147 LTS-029 chr16 46508169 46587949 79781 * ANKRD26P1 0 1 NA 0.809169311316865 73 0.365146163474508 4 4 0 -5.76474699066832 LTS-029 chr16 46587950 48382214 1794265 * c(MIR548AE2, DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, MYLK3, ABCC12) 0.238695200655755 7 0.24052472400388 0.780540893747198 1458 0.239236071178575 4 3 1 -6.7596669691685 LTS-029 chr16 48382215 48385459 3245 * c(MIR548AE2, LONP2) NA 0 NA 1.105 1 NA NA NA NA NA LTS-029 chr16 48385460 48643778 258319 * c(LOC100507577, MIR548AE2, SIAH1, LONP2, N4BP1) NA 0 NA 1.04906428922461 212 0.243917007550675 6 NA NA -5.7743309259318 LTS-029 chr16 48643779 49313106 669328 * c(CBLN1, N4BP1) 0.197787902768139 2 0.313248304065641 0.790482899065567 28 0.56823863545644 4 3 1 -6.7834984298493 LTS-029 chr16 49313107 49315688 2582 * CBLN1 0.454 1 NA 0.869072634585557 27 0.211375134047142 5 5 0 -5.76468702367067 LTS-029 chr16 49315689 55364397 6048709 * c(LINC00919, IRX5, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, CNEP1R1, TOX3, BRD7, C16orf97, HEATR3, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, FTO, IRX6, IRX3, CHD9, NKD1, CBLN1) 0.403432948796182 47 0.158083813646149 0.773667135877634 2483 0.226833858269761 4 2 2 -6.75423458575267 LTS-029 chr16 55364398 55364459 62 * IRX6 0.499 1 NA 0.997 1 NA NA NA NA NA LTS-029 chr16 55364460 55575774 211315 * c(MMP2, LPCAT2, IRX6) 0.362990597466252 11 0.0706343980070488 1.14352461110956 157 0.246273513382502 6 4 2 -6.75543963010938 LTS-029 chr16 55575775 56899460 1323686 * c(MIR3935, CES1, NUDT21, CES5A, DKFZP434H168, AMFR, GNAO1, LOC283856, MT1DP, CES1P2, MIR138-2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, CES1P1, LPCAT2, OGFOD1, BBS2, MT1IP, SLC6A2, SLC12A3, CAPNS2, MT4, NUP93) 0.424882355943876 37 0.110090707891102 0.763812740092753 1245 0.210559105098732 4 2 2 -6.74708265705523 LTS-029 chr16 56899461 56900937 1477 * SLC12A3 NA 0 NA 1.27 1 NA NA NA NA NA LTS-029 chr16 56900938 56918131 17194 * SLC12A3 0.385981130525151 2 0.0692964645562817 1.1491096582032 61 0.178652546134773 8 5 3 -6.75503971337429 LTS-029 chr16 56918132 56919077 946 * SLC12A3 NA 0 NA 0.701 1 NA NA NA NA NA LTS-029 chr16 56919078 70068086 13149009 * c(CDH3, CDH5, MIR1538, MIR1972-1, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, CETP, NFAT5, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, NA NA NA NA NA NA NA NA NA LTS-029 TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR140, MMP15, MIR328, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, POLR2C, PRMT7, DUS2, CHTF8, SLC38A7, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, HERPUD1, CDH1) 0.432312408733051 191 0.117911917234678 0.773372765308809 10684 0.619003071616865 4 2 2 -6.74348701151457 LTS-029 NA NA NA NA LTS-029 chr16 70068087 70161263 93177 * c(PDXDC2P, CLEC18C, PDPR) 0.298 1 NA 0.735314660512255 29 0.26881511125569 4 4 0 -5.76768483740162 LTS-029 chr16 70161264 70871792 710529 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, PDPR, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.34567064195835 22 0.143371614740924 0.772662573417843 1359 0.201171658890952 4 3 1 -6.82800337435626 LTS-029 chr16 70871793 70874035 2243 * HYDIN NA 0 NA 1.04 1 NA NA NA NA NA LTS-029 chr16 70874036 71196616 322581 * HYDIN 0.366972944968454 88 0.0483591524740062 1.09436944400239 566 0.427284082312596 6 4 2 -6.8089974535921 LTS-029 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.787 1 NA NA NA NA NA LTS-029 chr16 71209484 71423487 214004 * c(HYDIN, CMTR2, CALB2) 0.457467247014807 3 0.030199337741083 0.7911073882307 159 0.219967108946747 4 2 2 -7.52130228803212 LTS-029 chr16 71423488 71465132 41645 * CALB2 0 1 NA 0.807483524255604 23 0.354844178907232 4 4 0 -5.7645718413927 LTS-029 chr16 71465133 72188350 723218 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, TXNL4B, ZNF821, TAT, SNORD71, ZNF19, ZNF23, PMFBP1, MARVELD3, DHX38, IST1) 0.313121327426896 23 0.224289559106327 0.753519278472656 1473 0.278483316602364 4 3 1 -6.74920213240894 LTS-029 chr16 72188351 72827758 639408 * c(ZFHX3, PMFBP1) 0.454 1 NA 0.824431087776882 153 0.176344256452048 4 4 0 -5.79426718370863 LTS-029 chr16 72827759 90161164 17333406 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, NA NA NA NA NA NA NA NA NA LTS-029 LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, BANP, RFWD3, ZDHHC7, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PIEZO1, ATP2C2) 0.433223922664669 365 0.104355346850931 0.771163746863388 11244 0.319604717085098 4 2 2 -6.77293348965545 LTS-029 NA NA NA NA LTS-029 chr16 90161165 90161242 78 * character(0) NA 0 NA 0.662 1 NA NA NA NA NA LTS-029 chr17 6004 6115 112 * DOC2B 0.063 1 NA 1.14928689596479 3 0.449829967876752 6 6 0 -5.76441042071527 LTS-029 chr17 6116 2699935 2693820 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, DOC2B, MIR22HG, NA NA NA NA NA NA NA NA NA LTS-029 SCARF1, RPH3AL, SGSM2) 0.0794941582813106 114 0.0302565403887938 0.755188868369598 3408 0.272715593643012 4 4 0 -6.76599269166166 LTS-029 NA NA NA NA LTS-029 chr17 2699936 3030994 331059 * c(RAP1GAP2, OR1D2, OR1D5, OR1G1) NA 0 NA 0.802290181129482 179 0.721800408233793 4 NA NA -5.76459624569596 LTS-029 chr17 3030995 3100764 69770 * character(0) NA 0 NA 0.393 1 NA NA NA NA NA LTS-029 chr17 3100765 3100802 38 * character(0) 0.125 1 NA 0.184 1 NA NA NA NA NA LTS-029 chr17 3100803 4520316 1419514 * c(P2RX5-TAX1BP3, MYBBP1A, CYB5D2, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ZZEF1, SHPK, OR1A2, TAX1BP3, SMTNL2, ITGAE, OR3A4P, ASPA, ATP2A3, OR3A1, OR3A2, P2RX1, P2RX5, ANKFY1, NCBP3, OR1D4, UBE2G1, TRPV1, EMC6, OR1A1, OR1E1, OR1E2, GSG2, OR3A3, CAMKK1, SPATA22) 0.149530682102415 68 0.0519976594158183 0.449641556429812 2435 0.165802705583504 2 2 0 -6.78074923423577 LTS-029 chr17 4520317 4534232 13916 * ALOX15 NA 0 NA 0.74 1 NA NA NA NA NA LTS-029 chr17 4534233 4545660 11428 * ALOX15 0 1 NA 0.772910900156468 82 0.13940404029247 4 4 0 -5.76449177597333 LTS-029 chr17 4545661 4574676 29016 * character(0) NA 0 NA 0.261 1 NA NA NA NA NA LTS-029 chr17 4574677 8194878 3620202 * c(C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, ZFP3, CLDN7, DNAH2, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, ENO3, FGF11, NLRP1, CAMTA2, KDM6B, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, NA NA NA NA NA NA NA NA NA LTS-029 ALOX12P2, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, LOC339166, TMEM95, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SLC25A35, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ATP1B2, NUP88, MINK1, MED31, DERL2, YBX2, PER1, PFAS, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, DHX33, PSMB6, PLSCR3, MIR497, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, ZNF232, MIS12, PHF23, CTC1, PITPNM3, TEKT1, SLC25A11, ZMYND15, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753) 0.131006471491119 152 0.0565994330126898 0.441768792429311 8706 0.113765553329036 2 2 0 -6.85162564895109 LTS-029 NA NA NA NA LTS-029 chr17 8194879 8195810 932 * SLC25A35 NA 0 NA 0.619 1 NA NA NA NA NA LTS-029 chr17 8195811 12917834 4722024 * c(MIR744, LOC100128288, LINC00675, MAGOH2P, TMEM220-AS1, USP43, KRBA2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, ARHGEF15, PIK3R5, LINC00670, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ADPRM, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, RNF222, PIRT, ZNF18, NDEL1, GAS7, MYH13, GLP2R, MYOCD, NTN1, STX8, ARHGAP44) 0.119081967258324 60 0.0637912290519222 0.477372931402468 3959 0.157826062164325 2 2 0 -7.0536350957244 LTS-029 chr17 12917835 15475087 2557253 * c(TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, COX10, CDRT15, TVP23C, CDRT4, PMP22, ELAC2, TEKT3, MGC12916, CDRT7, CDRT15P1, HS3ST3B1, HS3ST3A1) 0.15643012416029 28 0.0632719313881543 0.437181668182422 715 0.185392946004213 2 2 0 -6.86011416909064 LTS-029 chr17 15475088 15475269 182 * TRIM16 0 1 NA 0.549383190883802 3 0.81144890987254 3 3 0 -5.76441249438321 LTS-029 chr17 15475270 16649035 1173766 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.116773502620064 12 0.0472725815848571 0.464269995580782 1405 0.292516151135042 2 2 0 -6.82713171331209 LTS-029 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 1.262 1 NA NA NA NA NA LTS-029 chr17 16664882 16836398 171517 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) NA 0 NA 1.57216700251457 40 0.728126626332507 9 NA NA -5.76453535657579 LTS-029 chr17 16836399 17907784 1071386 * c(PEMT, RAI1, SMCR5, NA, TOM1L2, FLCN, PLD6, MPRIP, TNFRSF13B, RASD1, MED9, NT5M, SREBF1, MIR33B, DRC3, COPS3) 0.0723446012090042 20 0.0360600376565177 0.755540529210312 1281 0.202670672178392 4 4 0 -6.7713281961568 LTS-029 chr17 17907785 17909371 1587 * DRC3 NA 0 NA 1.244 1 NA NA NA NA NA LTS-029 chr17 17909372 18315385 406014 * c(MIEF2, SMCR8, DRG2, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A, GID4, DRC3, ATPAF2) 0.0683465008338536 38 0.0487624441570631 1.11319887088763 1433 0.386028982646343 5 5 0 -6.77716769375146 LTS-029 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.075 1 NA NA NA NA NA LTS-029 chr17 18378811 18397991 19181 * LGALS9C NA 0 NA 0.219225374691418 49 0.185371320221183 1 NA NA -5.78927096181578 LTS-029 chr17 18397992 18498543 100552 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) NA 0 NA 0.569919610050295 39 1.25818567400976 3 NA NA -5.76467212267824 LTS-029 chr17 18498544 18528574 30031 * CCDC144B NA 0 NA 1.006 1 NA NA NA NA NA LTS-029 chr17 18528575 18793298 264724 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, PRPSAP2, ZNF286B) 0.0784418720824489 15 0.0682715167547931 1.01031693833889 466 0.389784176417801 5 5 0 -6.76144931593492 LTS-029 chr17 18793299 18814448 21150 * PRPSAP2 NA 0 NA 0.697 1 NA NA NA NA NA LTS-029 chr17 18814449 20924620 2110172 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.0874664099552848 38 0.0449927526960019 0.77746081235469 1976 0.211536547431881 4 4 0 -6.76076661942406 LTS-029 chr17 20924621 21194769 270149 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.402 1 NA 0.716388952217877 109 0.159595749510999 4 4 0 -5.81682447956133 LTS-029 chr17 21194770 21194843 74 * MAP2K3 0.375828307398322 3 0.0272213151776324 0.689734271776501 6 0.148224154576776 16 10 6 -6.73696067190582 LTS-029 chr17 21194844 21194852 9 * MAP2K3 NA 0 NA 0.944 1 NA NA NA NA NA LTS-029 chr17 21194853 21318586 123734 * c(KCNJ12, MAP2K3) 0.419789271111829 50 0.0516072451803237 1.02012976909668 148 0.359199546444879 6 3 3 -6.73775849908303 LTS-029 chr17 21318587 21318595 9 * KCNJ12 0.266 1 NA 1.55 1 NA NA NA NA NA LTS-029 chr17 21318596 21320365 1770 * KCNJ12 0.296845810743259 37 0.0669740324381101 1.240340569843 80 0.626011950259009 14 10 4 -6.7343050803426 LTS-029 chr17 21320366 21320422 57 * KCNJ12 NA 0 NA 0.781 1 NA NA NA NA NA LTS-029 chr17 21320423 22066835 746413 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.333193242818769 11 0.153196130974168 0.802180437478435 204 0.355159753317718 4 3 1 -6.78434685026796 LTS-029 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.905 1 NA NA NA NA NA LTS-029 chr17 25620838 25887530 266693 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.072 1 NA 0.779357135556931 81 0.185377690868143 4 4 0 -5.76463223778447 LTS-029 chr17 25887531 32906432 7018902 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, SLC46A1, LRRC37B, ABHD15, TLCD1, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, RHBDL3, LYRM9, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, TMEM98, POLDIP2, TBC1D29, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, EFCAB5, NA NA NA NA NA NA NA NA NA LTS-029 TMIGD1, LGALS9, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, RHOT1, COPRS, FAM222B, ADAP2, UTP6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, MIR632, TNFAIP1, VTN, ZNF207, TEFM, ATAD5, RAB34, NSRP1, RNF135, RAB11FIP4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.0888194202017408 86 0.0593114216086761 0.755092721604692 7837 0.207334501602124 4 4 0 -6.89421404969285 LTS-029 NA NA NA NA LTS-029 chr17 32906433 32907940 1508 * TMEM132E NA 0 NA 1.196 1 NA NA NA NA NA LTS-029 chr17 32907941 33258081 350141 * c(CCT6B, TMEM132E) 0 1 NA 0.943157045456735 112 0.292497587000134 5 5 0 -5.76455104336029 LTS-029 chr17 33258082 33259389 1308 * CCT6B NA 0 NA 0.737 1 NA NA NA NA NA LTS-029 chr17 33259390 34432661 1173272 * c(SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.0994554987578184 29 0.0917104702028486 0.722368591221957 2105 0.326550623891694 4 4 0 -6.81001143895042 LTS-029 chr17 34432662 34640942 208281 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.465302777311043 39 0.488022657988184 2 NA NA -5.76474953783707 LTS-029 chr17 34640943 34640956 14 * c(CCL4L1, NA) NA 0 NA 1.915 1 NA NA NA NA NA LTS-029 chr17 34640957 36234012 1593056 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.065 1 NA 0.723852758630638 1532 0.17610028120019 4 4 0 -5.95911890455903 LTS-029 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.351 1 NA NA NA NA NA LTS-029 chr17 36351756 36385038 33283 * LOC440434 0.472612194644707 2 0.015556349186104 0.356193138865011 62 0.264177244176255 2 1 1 -10.2841431393059 LTS-029 chr17 36385039 36398156 13118 * LOC440434 NA 0 NA 0.706 1 NA NA NA NA NA LTS-029 chr17 36398157 39240520 2842364 * c(LOC100131347, KRTAP4-7, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, CISD3, GSDMA, GRB7, SOCS7, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, NA NA NA NA NA NA NA NA NA LTS-029 MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, SMARCE1, THRA, TOP2A, KRTAP1-4, KRTAP2-2, KRTAP2-3, PCGF2, CACNB1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, TNS4, FBXL20, KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.0826551576598692 158 0.028714258251696 0.749022237652347 6004 0.234764347611553 4 4 0 -6.81382495735357 LTS-029 NA NA NA NA LTS-029 chr17 39240521 39240601 81 * KRTAP4-7 NA 0 NA 0.159 1 NA NA NA NA NA LTS-029 chr17 39240602 39258432 17831 * c(KRTAP4-7, KRTAP4-8) NA 0 NA 0.0758024894549133 39 0.0370225521232937 0 NA NA -7.17234974503561 LTS-029 chr17 39258433 39261521 3089 * character(0) NA 0 NA 0.365 1 NA NA NA NA NA LTS-029 chr17 39261522 39305956 44435 * c(KRTAP4-9, KRTAP4-11, KRTAP4-6, KRTAP4-12, KRTAP4-5) 0.128527382559258 8 0.0648689613209364 0.755791334918379 82 0.289483454502314 2 2 0 -6.82113402384751 LTS-029 chr17 39305957 39340852 34896 * c(KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2) 0.229 1 NA 0.747545570836874 63 0.215276170286187 4 4 0 -5.76547617292892 LTS-029 chr17 39340853 39406713 65861 * c(KRTAP9-1, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4, KRTAP4-1) 0.305210250242875 9 0.0350642267845735 1.04504706059588 71 0.490988092156866 7 5 2 -6.74008933292011 LTS-029 chr17 39406714 39464487 57774 * c(KRTAP9-7, KRTAP16-1, KRTAP9-6, KRTAP29-1, KRTAP9-9, KRTAP9-4) 0.037 1 NA 0.725301343112069 82 0.461052382879764 4 4 0 -5.76542225174594 LTS-029 chr17 39464488 41246481 1781994 * c(RAMP2-AS1, KRTAP16-1, LOC100505782, MIR5010, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, RAMP2, VAT1, P3H4, NT5C3B, CNTD1, CNP, RUNDC1, LINC00974, FAM134C, ZNF385C, EZH1, KCNH4, GAST, G6PC, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, IFI35, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, LINC00671, KRT33B, KRT34, KRT35, NAGLU, ACLY, NA NA NA NA NA NA NA NA NA LTS-029 ATP6V0A1, KLHL11, RAB5C, FKBP10, RPL27, WNK4, BRCA1, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, AARSD1, RND2, TTC25, KRTAP17-1, VPS25, GHDC, CNTNAP1, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, HSPB9) 0.0838878885977289 45 0.0353482672842673 0.764725098067959 4538 0.206501371487304 4 4 0 -6.76517075357641 LTS-029 NA NA NA NA LTS-029 chr17 41246482 41251931 5450 * BRCA1 0.078 1 NA 0.802756754054285 21 0.185813167814699 4 4 0 -5.76445882425259 LTS-029 chr17 41251932 41606033 354102 * c(LINC00910, MIR2117, LINC00854, NBR2, TMEM106A, DHX8, ETV4, ARL4D, NBR1, BRCA1) 0.318581734691553 9 0.151275411088518 0.7097364994001 389 0.228629645470828 4 3 1 -6.79670604017368 LTS-029 chr17 41606034 41852041 246008 * c(DUSP3, ETV4, MEOX1, SOST) 0.043 1 NA 0.774292519789342 143 0.229609646523008 4 4 0 -5.76491478420621 LTS-029 chr17 41852042 44159874 2307833 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DUSP3, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0871603294875628 46 0.0488798981631963 0.77142083152092 3709 0.188339152479919 4 4 0 -6.76451224139152 LTS-029 chr17 44159875 44336603 176729 * character(0) NA 0 NA 0.485841520354886 49 0.100225129237194 2 NA NA -5.81371969161521 LTS-029 chr17 44336604 44336709 106 * character(0) NA 0 NA 0.341 1 NA NA NA NA NA LTS-029 chr17 44336710 44782225 445516 * character(0) NA 0 NA 0.309186792516562 66 0.148951224005938 1 NA NA -5.82423968688542 LTS-029 chr17 44782226 45197296 415071 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.0914674029027184 6 0.0251588288015692 0.754613121464161 246 0.218498337015593 4 4 0 -6.90307800952508 LTS-029 chr17 45197297 45214473 17177 * CDC27 0.366 1 NA 0.701594630880117 43 0.121114412836284 4 4 0 -5.77321325743325 LTS-029 chr17 45214474 45234298 19825 * CDC27 0.302571344047045 14 0.109004309825069 0.703868744262823 57 0.191104163686839 4 3 1 -6.74622060778405 LTS-029 chr17 45234299 45266610 32312 * CDC27 0.121 1 NA 0.663520723858926 43 0.261464461164089 3 3 0 -5.76576587473634 LTS-029 chr17 45266611 48154817 2888207 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-029 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.0771851774379229 46 0.0356872959438991 0.73097094154219 3895 0.297464225868 4 4 0 -6.83066934488898 LTS-029 NA NA NA NA LTS-029 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 0.887 1 NA NA NA NA NA LTS-029 chr17 48155444 56665425 8509982 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, NA NA NA NA NA NA NA NA NA LTS-029 CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.0807433513256682 87 0.0298925635711703 0.770850794140541 5338 0.240775005289651 4 4 0 -6.76535305954525 LTS-029 NA NA NA NA LTS-029 chr17 56665426 56670853 5428 * TEX14 NA 0 NA 0.447 1 NA NA NA NA NA LTS-029 chr17 56670854 56707992 37139 * TEX14 0.134 1 NA 0.448752836457655 74 0.178976101813518 2 2 0 -5.76449100625312 LTS-029 chr17 56707993 56729235 21243 * TEX14 NA 0 NA 0.793 1 NA NA NA NA NA LTS-029 chr17 56729236 65119203 8389968 * c(MIR4729, MIR4737, MIR3064, MIR5047, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, PPM1E, TANC2, GH1, GH2, CACNG5, CACNG4, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, TRIM37, RNFT1, TUBD1, TACO1, PTRH2, PECAM1, NA NA NA NA NA NA NA NA NA LTS-029 BCAS3, SMG8, PRR11, PRKCA, TEX2, TEX14, CCDC47, PSMC5, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, LOC729683, CA4, MIR454, CACNG1, DHX40, LIMD2, KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.068294808470233 51 0.0342961153691167 0.748877924882269 5838 0.245439842040932 4 4 0 -6.96046110164599 LTS-029 NA NA NA NA LTS-029 chr17 65119204 66864377 1745174 * c(SNORA38B, LINC00674, ABCA8, BPTF, ARSG, NOL11, PITPNC1, C17orf58, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PSMD12, MIR635, SLC16A6, HELZ) 0.0901007342281237 12 0.0259596131548896 0.690052882946837 1086 0.169961879672951 3 3 0 -7.20201859087198 LTS-029 chr17 66864378 80363278 13498901 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4524A, MIR4730, CEP295NL, MIR4524B, LOC100996291, DNAH17-AS1, CDK3, ALYREF, ABCA10, ABCA9, ABCA8, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, NA NA NA NA NA NA NA NA NA LTS-029 SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 NPLOC4, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SOX9, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.0845565888188202 338 0.0428413636355188 0.766620931499961 15296 0.267053670521568 4 4 0 -6.80761643865192 LTS-029 NA NA NA NA LTS-029 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.49344698760666 39 0.651368081707836 8 NA NA -5.76444293515582 LTS-029 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.723 1 NA NA NA NA NA LTS-029 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0782869680287246 26 0.023723957381646 0.740644416319283 876 0.209896597212056 4 4 0 -6.76294707897483 LTS-029 chr17 81050983 81083625 32643 * METRNL NA 0 NA 0.926591905693679 13 0.206433418831003 5 NA NA -5.76470417815512 LTS-029 chr18 116845 121139 4295 * ROCK1P1 0.082 1 NA 0.874567867473283 33 0.386675305219595 5 5 0 -5.76452906318059 LTS-029 chr18 121140 122320 1181 * ROCK1P1 NA 0 NA 0.899424733122206 28 0.36805901585675 5 NA NA -5.76442597464345 LTS-029 chr18 122321 158470 36150 * character(0) NA 0 NA 1.37 1 NA NA NA NA NA LTS-029 chr18 158471 674048 515578 * c(CETN1, CLUL1, TYMSOS, ENOSF1, TYMS, COLEC12, USP14, THOC1) 0.0577068642739344 5 0.0223450218169506 1.30793138922234 369 0.309833170377993 6 6 0 -6.82164254991798 LTS-029 chr18 674049 3580552 2906504 * c(MYL12B, NDC80, MYL12A, ADCYAP1, SMCHD1, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, LOC727896, YES1, EMILIN2, MYOM1, DLGAP1, LPIN2) 0.075722572170504 27 0.0343246192576041 0.718074484017564 1430 0.248923999099097 4 4 0 -6.9503047984303 LTS-029 chr18 3580553 3580565 13 * DLGAP1 NA 0 NA 1.012 1 NA NA NA NA NA LTS-029 chr18 3580566 8546022 4965457 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.0766433175387387 41 0.0623569484852349 0.831704334489459 1425 0.282721345434339 4 4 0 -6.85666649409075 LTS-029 chr18 8546023 14752957 6206935 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.0860367956326422 101 0.0376997833331484 0.771758910787707 3268 0.806134553551566 4 4 0 -6.76035403123322 LTS-029 chr18 14752958 14779986 27029 * ANKRD30B 0.301 1 NA 0.747840123527276 30 0.381233637297257 4 4 0 -5.76466920586969 LTS-029 chr18 14779987 15006123 226137 * c(MIR3156-2, ANKRD30B) 0.176705785622495 10 0.175627161908402 0.918924440275272 126 0.810239296535779 6 5 1 -6.75468619001745 LTS-029 chr18 15006124 15006193 70 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-029 chr18 18529727 18529837 111 * ROCK1 0.098 1 NA 0.582430439375589 3 0.213226014673007 3 3 0 -5.76441557159658 LTS-029 chr18 18529838 19450386 920549 * c(MIR320C1, ESCO1, ABHD3, MIR1-2, MIR133A1, MIB1, ROCK1, SNRPD1, GREB1L) 0.198004633635087 11 0.175767356572157 0.776153394738696 769 0.252590375276505 4 3 1 -6.89060028155726 LTS-029 chr18 19450387 19997702 547316 * c(GATA6-AS1, GATA6, MIB1, CTAGE1) NA 0 NA 0.824537660129679 146 0.138683552988906 4 NA NA -5.80586845774013 LTS-029 chr18 19997703 20513374 515672 * c(MIR4741, RBBP8, CTAGE1) 0.403 1 NA 1.0636038408363 9 0.29191651203726 6 6 0 -5.77276311618001 LTS-029 chr18 20513375 50278686 29765312 * c(CDH2, ZSCAN30, SNORD58C, LINC01630, MIR302F, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, ACAA2, ZNF271P, MAPRE2, OSBPL1A, HAUS1, LOXHD1, INO80C, TTC39C, PSMA8, C18orf25, SLC25A52, DSG4, AQP4-AS1, ANKRD29, TCEB3C, DCC, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, TRAPPC8, ZNF396, SLC39A6, NA NA NA NA NA NA NA NA NA LTS-029 GALNT1, ZNF521, TPGS2, SETBP1, CABYR, SNORD58B, SNORD58A, KCTD1, LINC00907, SIGLEC15, ST8SIA5, C18orf8, CXXC1, AQP4, CCDC178, LAMA3, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, NPC1, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, MEX3C, RNF138, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ELP2, IMPACT, ELAC1, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RBBP8, HRH4, RIT2, RPL17, KC6, GAREM1, MIR924HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SKOR2, SLC14A1, SS18, SCARNA17, SYT4, TAF4B, TTR, PCAT18, LOC729950, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, TMEM241, NOL4, RIOK3, PSTPIP2, PIAS2, CABLES1, B4GALT6, LIPG, CTIF) 0.320812506302706 159 0.103828916941826 1.09371813336419 10582 0.311498752053119 6 4 2 -6.85241815285171 LTS-029 NA NA NA NA LTS-029 chr18 50278687 50589718 311032 * DCC NA 0 NA 1.13633383694026 22 0.236446789818734 6 NA NA -5.76550912886485 LTS-029 chr18 50589719 50832102 242384 * DCC 0.47 1 NA 0.803849391433321 39 0.22155929131533 4 4 0 -5.7661212243267 LTS-029 chr18 50832103 54361837 3529735 * c(LINC01539, MIR4529, POLI, STARD6, C18orf54, DCC, WDR7, DYNAP, RAB27B, SNORA37, TCF4, CCDC68, MBD2, TXNL1) 0.432046421801509 29 0.0880369520491729 0.780542776306689 1131 0.255086175121477 4 2 2 -6.74435942002654 LTS-029 chr18 54361838 54448778 86941 * WDR7 0.445 1 NA 0.762606727788816 53 0.109495286231059 4 4 0 -5.76797522548321 LTS-029 chr18 54448779 55157857 709079 * c(LINC-ROR, WDR7, BOD1L2, ST8SIA3, ONECUT2) 0.182048116012411 9 0.207288446373646 0.778719249860113 519 0.415797341524268 5 4 1 -6.87376199678405 LTS-029 chr18 55157858 55226383 68526 * c(FECH, ONECUT2) 0.478 1 NA 0.742658407312707 89 0.234086164107924 4 4 0 -5.76669054835259 LTS-029 chr18 55226384 63549126 8322743 * c(CDH7, LOC100505549, MIR3591, LINC01544, MALT1, ALPK2, CCBE1, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, PIGN, KDSR, CDH20, HMSD, LOC284294, GRP, RAX, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, MC4R, NARS, SERPINB2, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, SERPINB3, SERPINB4, SERPINB7, TNFRSF11A, SERPINB12, SERPINB11, SEC11C, VPS4B) 0.431818747175867 69 0.111680473373783 0.765078401705764 3549 0.348715295877387 4 2 2 -6.76560923345119 LTS-029 chr18 63549127 65176556 1627430 * c(MIR5011, CDH19, DSEL) 0.410397409608085 4 0.100976895047002 0.940503861807809 270 0.359682852561177 5 3 2 -6.74032171426772 LTS-029 chr18 65176557 77926862 12750306 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, DSEL, SOCS6, ZNF516) 0.43818061567674 79 0.0852124500048703 0.764964987076546 3437 0.202949262228279 4 2 2 -6.87770950061253 LTS-029 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.682926179174069 17 0.14578882794282 3 NA NA -5.78560774550761 LTS-029 chr19 107416 290947 183532 * c(LINC01002, OR4F17, PLPP2) 0.053 1 NA 0.779970879724089 31 0.205979730707576 4 4 0 -5.76450732407488 LTS-029 chr19 290948 9010725 8719778 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-029 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, ZNF558, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, OR2Z1, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 ANGPTL4, MARCH2, CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, MBD3L1, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MIDN, DPP9, R3HDM4, TMEM259, TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, MUC16, APBA3, SAFB2, CD70, CDC34) 0.0905071835175319 470 0.0502098336628632 0.765810350624209 15128 0.713371614626619 4 4 0 -6.77491972035917 LTS-029 NA NA NA NA LTS-029 chr19 9010726 9012840 2115 * MUC16 0.381 1 NA 0.748097864250961 17 0.233461216706078 4 4 0 -5.76446339995489 LTS-029 chr19 9012841 9024995 12155 * MUC16 0.219788976998155 9 0.100976619956195 0.883484500033973 79 0.644469686304988 10 8 2 -6.74167323137392 LTS-029 chr19 9024996 9024998 3 * MUC16 0.129 1 NA 2.051 1 NA NA NA NA NA LTS-029 chr19 9024999 9868404 843406 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, MUC16) 0.0709551454944226 56 0.0305570575519595 0.785165018106046 1609 0.586593982238528 4 4 0 -6.76669588499069 LTS-029 chr19 9868405 10070305 201901 * c(ZNF846, COL5A3, PIN1, FBXL12, UBL5, OLFM2) 0.146 1 NA 0.808992042468403 159 0.227079387187264 4 4 0 -5.76658231974713 LTS-029 chr19 10070306 11594634 1524329 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, S1PR5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, NA NA NA NA NA NA NA NA NA LTS-029 PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.0875475998997187 111 0.0594045404552499 0.750282212924877 3800 0.279397329362422 4 4 0 -6.77136124015187 LTS-029 NA NA NA NA LTS-029 chr19 11594635 11594844 210 * ZNF653 NA 0 NA 1.153 1 NA NA NA NA NA LTS-029 chr19 11594845 11594888 44 * ZNF653 0 1 NA 3.408 1 NA NA NA NA NA LTS-029 chr19 11594889 11598483 3595 * ZNF653 0.41 1 NA 1.46510685115237 31 0.229362219986181 8 8 0 -5.76441644549776 LTS-029 chr19 11598484 11725723 127240 * c(ZNF653, CNN1, ZNF627, ECSIT, ACP5, ELOF1) 0.456749130314425 5 0.0222553364387061 1.40622852073498 160 0.312932124813938 8 4 4 -8.01327049021956 LTS-029 chr19 11725724 11727481 1758 * ZNF627 NA 0 NA 1.129 1 NA NA NA NA NA LTS-029 chr19 11727482 12541214 813733 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ZNF823, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.427662455522675 16 0.0503691373759766 1.22018203425831 1322 0.452108126183951 6 3 3 -6.76429840365623 LTS-029 chr19 12541215 12541542 328 * ZNF443 0.279 1 NA 1.18851620108254 9 0.111434335422755 6 6 0 -5.76447293440067 LTS-029 chr19 12541543 12690533 148991 * c(ZNF443, ZNF564, ZNF709, ZNF490) 0.336436791584932 9 0.200450395637203 1.17484476336491 230 0.285625958936604 6 4 2 -6.73855841934852 LTS-029 chr19 12690534 12691335 802 * ZNF490 0.479 1 NA 1.18387757983082 13 0.340751168705786 6 6 0 -5.76442460870048 LTS-029 chr19 12691336 12741353 50018 * c(ZNF791, ZNF490) 0.477 1 NA 1.11373124802401 115 0.234515053781283 6 6 0 -5.76441219841473 LTS-029 chr19 12741354 12741423 70 * character(0) 0.495 1 NA 1.903 1 NA NA NA NA NA LTS-029 chr19 12741424 15227798 2486375 * c(LOC100507373, DDX39A, RNASEH2A, KLF1, GIPC1, ILVBL, NACC1, MISP3, RLN3, OR1I1, CCDC105, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, CASP14, SYCE2, OR7A17, GCDH, OR7C2, OR7A5, OR7C1, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, OR7A10, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, NA NA NA NA NA NA NA NA NA LTS-029 RFX1, C19orf67, SLC1A6, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, SYDE1, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.443171948616247 60 0.119929285897229 1.3817815403997 4088 0.329123586424928 8 4 4 -6.78366814678091 LTS-029 NA NA NA NA LTS-029 chr19 15227799 15229993 2195 * ILVBL 0.371 1 NA 1.42239530115512 7 0.275030214790337 8 8 0 -5.76441526996855 LTS-029 chr19 15229994 15726560 496567 * c(MIR1470, AKAP8, ILVBL, CYP4F8, PGLYRP2, CYP4F22, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3) 0.314552113654417 9 0.23182482610799 1.43132495954673 885 0.420577665448707 8 6 2 -6.75411361155508 LTS-029 chr19 15726561 15730606 4046 * CYP4F8 0.447 1 NA 1.58872296543841 17 0.241026313550055 9 9 0 -5.76441943929258 LTS-029 chr19 15730607 19790205 4059599 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, KLF2, IFI30, CHERP, CERS1, CYP4F8, COPE, CCDC124, NXNL1, CIB3, CALR3, LRRC25, NR2C2AP, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, LINC00905, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR10H3, OR10H2, OR10H1, GDF1, SNORA68, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, BABAM1, IL12RB1, INSL3, NA NA NA NA NA NA NA NA NA LTS-029 JAK3, JUND, YJEFN3, SLC27A1, KCNN1, CYP4F24P, HAPLN4, CYP4F3, BORCS8-MEF2B, RAB8A, MYO9B, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ATP13A1, ANO8, SUGP1, CYP4F11, EPS15L1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, UCA1, CYP4F12, BST2, TPM4, LOC729966, BORCS8, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, PBX4, KIAA1683, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 ELL, PLVAP, USHBP1, TSSK6, C19orf44, GTPBP3, MPV17L2, HSH2D, CYP4F2, RFXANK, AP1M1, F2RL3, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, MED26, HOMER3, GDF15) 0.44671025487399 170 0.0975835945154309 1.38926687731958 7455 0.355952187352042 8 4 4 -6.80790130796141 LTS-029 NA NA NA NA LTS-029 chr19 19790206 23845016 4054811 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, LINC00663, ZNF493, ZNF429, ZNF728, LINC00664, ZNF506, GOLGA2P9, ZNF724, ZNF253, ZNF492, LOC641367, ZNF826P, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682, ZNF101) 0.440387596891239 36 0.110196487571138 1.16696219207517 1278 0.358392859797241 6 3 3 -6.79028066205193 LTS-029 chr19 23845017 23845915 899 * ZNF675 NA 0 NA 1.391 1 NA NA NA NA NA LTS-029 chr19 23845916 23923949 78034 * c(ZNF681, ZNF675) 0.434 1 NA 1.39034711451348 45 0.301926964544726 8 8 0 -5.7652304183782 LTS-029 chr19 23923950 24345121 421172 * c(HAVCR1P1, ZNF681, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.35893207230223 213 0.538160938494702 7 NA NA -5.76741426305203 LTS-029 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.394 1 NA 1.67210884937838 55 0.326208792694152 9 9 0 -5.77806935916525 LTS-029 chr19 30097269 31048184 950916 * c(POP4, PLEKHF1, C19orf12, URI1, CCNE1, ZNF536) 0.381468141438128 6 0.0297635123375362 1.68789864864362 361 0.383183965880904 8 5 3 -6.82580670933345 LTS-029 chr19 31765864 32131065 365202 * c(THEG5, TSHZ3) NA 0 NA 1.21666756704093 137 0.270257880004625 7 NA NA -5.77247771957243 LTS-029 chr19 32843747 34003712 1159966 * c(CEBPA, CEBPG, SLC7A9, WDR88, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12) 0.400832995807545 23 0.0924474853601066 1.7624322946317 1190 0.507601201041759 10 6 4 -6.73494624608436 LTS-029 chr19 34003713 34012609 8897 * PEPD NA 0 NA 0.804 1 NA NA NA NA NA LTS-029 chr19 34012610 35752917 1740308 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, WTIP, ZNF792, ZNF599, FAM187B, LGI4, LSM14A, GPI, SCGB2B2, HPN, ZNF181, LOC400685, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, SCN1B, SCGB1B2P, CHST8, KCTD15, PDCD2L, ZNF30, KIAA0355) 0.451201839117768 35 0.0857922740444283 1.43471365689443 1444 0.385290725895931 8 4 4 -6.80964162430008 LTS-029 chr19 35752918 35753565 648 * LSR NA 0 NA 1.66319201914526 7 0.29542906650046 9 NA NA -5.76441437718137 LTS-029 chr19 35753566 35757227 3662 * LSR NA 0 NA 0.931 1 NA NA NA NA NA LTS-029 chr19 35757228 35757427 200 * LSR 0.335 1 NA 0.970777660241746 5 0.0808504792812016 5 5 0 -5.76441841337828 LTS-029 chr19 35757428 35851239 93812 * c(MIR5196, FFAR1, FFAR3, MAG, LSR, HAMP, USF2, CD22) 0.324858570565006 9 0.062669769426734 1.02076357027216 293 0.364576221985596 7 5 2 -6.80913003890803 LTS-029 chr19 35851240 35851336 97 * FFAR3 NA 0 NA 0.624 1 NA NA NA NA NA LTS-029 chr19 35851337 35863609 12273 * FFAR3 0.406 1 NA 0.170424686877887 38 0.221564059111998 0 0 0 -5.78073662358227 LTS-029 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.789 1 NA NA NA NA NA LTS-029 chr19 35863628 40376832 4513205 * c(LINC01531, LOC100129935, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, DLL3, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, NA NA NA NA NA NA NA NA NA LTS-029 FBL, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, LGALS13, HNRNPL, APLP1, ZNF260, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, NPHS1, ATP4A, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LRFN1, ZFP14, ZNF529, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, TIMM50, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.335353188943034 179 0.0903485568017049 1.0867964772998 8143 0.301184180308955 6 4 2 -6.76890104842261 LTS-029 NA NA NA NA LTS-029 chr19 40376833 40376849 17 * FCGBP NA 0 NA 1.088 1 NA NA NA NA NA LTS-029 chr19 40376850 40399881 23032 * FCGBP 0.356 1 NA 0.449620114896825 39 0.193663397344426 2 2 0 -5.76443900168695 LTS-029 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.663 1 NA NA NA NA NA LTS-029 chr19 40405935 42221607 1815673 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, CEACAM5, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF780B, AKT2, CYP2G1P, PLD3, ZNF780A, C19orf54, CYP2S1, SERTAD3, SERTAD1, ZNF546, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PSMC4, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, FCGBP, CEACAM21, NA NA NA NA NA NA NA NA NA LTS-029 CCDC97, NUMBL, SHKBP1) 0.347675384203706 72 0.0696758872528778 1.07550564945425 3222 0.304072581262478 6 4 2 -6.74951161786111 LTS-029 NA NA NA NA LTS-029 chr19 42221608 42352401 130794 * c(CEACAM5, CEACAM3, LYPD4, CEACAM6, DMRTC2) 0 1 NA 1.07018672747833 138 0.216720520571573 6 6 0 -5.76733191499347 LTS-029 chr19 42352402 43920422 1568021 * c(LOC100289650, MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM8, ZNF526, DEDD2, MEGF8, ERF, CIC, PRG1, PRR19, TMEM145, CXCL17, LOC284344, GRIK5, GSK3A, LIPE, PSG8, ATP1A3, PAFAH1B3, POU2F2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, RPS19, CEACAM1, DMRTC2, ZNF574, PSG10P, TEX101, CNFN, ARHGEF1, CD79A) 0.243502893825056 16 0.169121455370591 1.09946460753587 1979 0.324053769071172 6 5 1 -6.76848296233946 LTS-029 chr19 43920423 43920443 21 * TEX101 0.416 1 NA 2.527 1 NA NA NA NA NA LTS-029 chr19 43920444 45822968 1902525 * c(SRRM5, LOC100379224, LOC100505715, APOC4-APOC2, MIR4531, TOMM40, ZNF234, CLASRP, CKM, CLPTM1, CEACAM20, IRGQ, ZNF428, IGSF23, ZNF296, CADM4, ETHE1, CBLC, ZNF285, LYPD3, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, PINLYP, BCAM, PLAUR, SMG9, IRGC, CEACAM19, MARK4, PVR, NECTIN2, RELB, BCL3, PHLDB3, XRCC1, ZNF45, ZNF221, NA NA NA NA NA NA NA NA NA LTS-029 ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, TEX101, EXOC3L2, ZNF235) 0.326024375197485 56 0.076833053966494 1.07920749481346 3147 0.297274617000144 6 4 2 -6.80388282356337 LTS-029 NA NA NA NA LTS-029 chr19 45822969 45848659 25691 * c(CKM, KLC3) NA 0 NA 0.612 1 NA NA NA NA NA LTS-029 chr19 45848660 46260412 411753 * c(EML2-AS1, MIR642B, PPP1R13L, CD3EAP, PPM1N, KLC3, ERCC1, ERCC2, FBXO46, FOSB, EML2, GIPR, GPR4, BHMG1, MIR330, QPCTL, RTN2, SNRPD2, MIR642A, VASP, OPA3) 0.345791297606462 5 0.198628547797138 0.746131061602289 929 0.180208586088249 4 3 1 -6.80106703980207 LTS-029 chr19 46260413 46262286 1874 * BHMG1 0.48 1 NA 0.672039849652853 7 0.087121972516915 3 3 0 -5.7654032995218 LTS-029 chr19 46262287 50156484 3894198 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, MIR3191, MIR3190, MIR320E, MIR4324, NAPA-AS1, CARD8-AS1, PPP5D1, DACT3-AS1, GFY, SAE1, RNU6-66P, LOC101059948, CGB3, RUVBL2, KDELR1, KPTN, PTH2, CGB1, CGB2, LMTK3, AP2S1, ALDH16A1, NTN5, CRX, CCDC155, DACT3, SIX5, IGFL2, DBP, ZNF114, SPACA4, DMPK, DMWD, EMP3, FCGRT, CARD8, ZC3H4, FLT3LG, RPL13A, SYNGR4, PPP1R15A, FTL, NA NA NA NA NA NA NA NA NA LTS-029 FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, BBC3, DKKL1, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, MYPOP, NANOS2, KCNA7, IGFL1, KCNJ14, BHMG1, IGFL3, LHB, LIG1, MIR150, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, TRPM4, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 PPP5C, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, RPL18, RPS11, RRAS, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SULT2B1, SULT2A1, SNORD23, C5AR1, TULP2, CCDC61, MIR769, CA11, FKRP, CALM3, RSPH6A, SYMPK, GRWD1, CCDC8, ZNF541, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 CD37, DHX34) 0.437393472300479 149 0.0946315475100485 0.75547848746335 7194 0.219475128325973 4 2 2 -6.82152111120842 LTS-029 NA NA NA NA LTS-029 chr19 50156485 52133720 1977236 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, KLK11, KLK8, FAM71E1, PNKP, SIGLEC11, CLDND2, JOSD2, IZUMO2, CPT1C, VSIG10L, C19orf84, AP2A1, ADM5, ETFB, ATF5, NUP62, NAPSB, KLK5, ZNF473, IL4I1, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, PRMT1, C19orf81, KLK3, IRF3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, NA NA NA NA NA NA NA NA NA LTS-029 KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, PTOV1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, SCAF1, TSKS, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, TBC1D17, MYH14, FUZ, MED25, BCL2L12, SYT3, AKT1S1, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.425756972606114 91 0.107929327258812 0.783412324719043 4140 0.218847169418807 4 2 2 -6.73455093520641 LTS-029 NA NA NA NA LTS-029 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.38 1 NA NA NA NA NA LTS-029 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.425540207439968 2 0.00212132034355964 1.31523288878998 39 0.617513347339999 8 4 4 -9.02990555773652 LTS-029 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.95 1 NA NA NA NA NA LTS-029 chr19 52196825 52544918 348094 * c(SPACA6, FPR1, FPR2, FPR3, ZNF615, HAS1, ZNF350, ZNF649, ZNF613, ZNF614, ZNF577, ZNF432) 0.465078723333252 8 0.025881253557629 0.769418268639166 515 0.192192625381489 4 2 2 -8.13507121248713 LTS-029 chr19 52544919 52550069 5151 * ZNF432 NA 0 NA 0.575 1 NA NA NA NA NA LTS-029 chr19 52550070 52772958 222889 * c(ZNF836, ZNF841, PPP2R1A, ZNF616, ZNF766, ZNF432) 0.174843741914216 5 0.0357379350270829 0.478196045258873 284 0.105407843953445 2 2 0 -7.4268430354248 LTS-029 chr19 52772959 52780733 7775 * ZNF766 NA 0 NA 0.675 1 NA NA NA NA NA LTS-029 chr19 52780734 53958263 1177530 * c(ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF610, ZNF600, ZNF320, ZNF525, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, ZNF701, ZNF83, ZNF415, FAM90A27P, MIR643, ZNF28, ZNF137P, ZNF665, ZNF702P, ZNF611, ZNF528, ZNF347, ZNF766, ZNF468, ZNF160, ZNF765, ZNF845) 0.449583883709053 59 0.074586583156143 0.760344986511735 1594 0.23653716733242 4 2 2 -6.83576662448882 LTS-029 chr19 53958264 53959568 1305 * ZNF761 0.455 1 NA 0.673421010469357 19 0.0609305999617262 3 3 0 -5.76589543103776 LTS-029 chr19 53959569 54394965 435397 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, ZNF813, LOC284379, ZNF761, MIR372, MIR373, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, NA NA NA NA NA NA NA NA NA LTS-029 MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, NLRP12, MYADM) 0.216813996746922 9 0.231872510468816 0.752135308421428 589 0.355551091082404 4 3 1 -6.79428652677699 LTS-029 NA NA NA NA LTS-029 chr19 54394966 54486773 91808 * c(MIR935, PRKCG, CACNG8, CACNG7) 0.5 1 NA 0.783366764987806 167 0.138379313582379 4 4 0 -5.76441919748147 LTS-029 chr19 54486774 54800203 313430 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, OSCAR, TMC4, PRPF31, VSTM1, TFPT, TARM1, NDUFA3, CNOT3, CACNG8, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.432649513025742 42 0.0748352623597368 0.789333597942643 1132 0.253834279603411 4 2 2 -6.74902107004379 LTS-029 chr19 54800204 54818411 18208 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.371193881628307 39 0.123032005973759 2 NA NA -5.79329165828731 LTS-029 chr19 54818412 54818557 146 * LILRA5 NA 0 NA 0.76 1 NA NA NA NA NA LTS-029 chr19 54818558 55328899 510342 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.424697295360212 37 0.115957095720995 0.746155306207666 995 0.28499166210388 4 2 2 -6.74341040430746 LTS-029 chr19 55328900 55328959 60 * c(KIR2DS4, KIR3DL1) 0.395 1 NA 1.275 1 NA NA NA NA NA LTS-029 chr19 55328960 55351171 22212 * c(KIR2DS4, KIR3DL1) 0.421604925492623 7 0.054923323174872 1.18448795591021 60 0.499688898696205 6 3 3 -6.73348314919379 LTS-029 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.284 1 NA NA NA NA NA LTS-029 chr19 55358616 56572832 1214217 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, NLRP13, NLRP8, NLRP5, TMEM190, ZNF524, ZNF784, NLRP4, ZNF579, NLRP7, NLRP11, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ISOC2, BRSK1, KMT5C, NA NA NA NA NA NA NA NA NA LTS-029 FIZ1, ZNF628, NCR1) 0.422828382913253 75 0.102072570898012 0.794420794085804 3008 0.325466061897486 4 2 2 -6.73438416591358 LTS-029 NA NA NA NA LTS-029 chr19 56572833 56600509 27677 * c(NLRP5, ZNF787) NA 0 NA 0.818769215034209 27 0.255036470214754 4 NA NA -5.76486963614055 LTS-029 chr19 56600510 56614236 13727 * ZNF787 NA 0 NA 0.513 1 NA NA NA NA NA LTS-029 chr19 56614237 56688669 74433 * c(ZNF787, ZNF444, GALP) 0.132 1 NA 0.436970264005303 41 0.146580711139115 2 2 0 -5.76731445278487 LTS-029 chr19 56688670 58083590 1394921 * c(MIMT1, ZNF667-AS1, PEG3-AS1, TRAPPC2B, ZNF460, ZIM3, ZNF543, ZFP28, SMIM17, ZNF548, ZNF542P, ZNF582, ZNF583, ZNF550, ZIM2, ZNF549, ZNF547, ZSCAN5B, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF416, VN1R1, ZNF304, ZNF471, USP29, ZNF71, ZNF667, AURKC, ZNF17, ZSCAN5A, ZNF419, GALP, ZNF835, ZNF264) 0.124950370799831 56 0.0609201734441682 0.480453852642508 1916 0.207145116791317 2 2 0 -6.81367439826071 LTS-029 chr19 58083591 58089521 5931 * ZNF416 0.229 1 NA 0.447019686201272 39 0.134366911613582 2 2 0 -5.76445244116315 LTS-029 chr19 58089522 58981184 891663 * c(A1BG, LOC100128398, ZNF587B, MIR4754, ZNF256, ZNF211, ZNF274, ZNF837, C19orf18, ZNF418, ZNF417, ZNF497, ZNF584, ZSCAN4, FKBP1AP1, ZNF324, ZNF544, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF324B, A1BG-AS1, ZNF586, ZNF416, RPS5, RNF225, ZSCAN18, ZNF814, ZNF8, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551) 0.144782432723752 33 0.0450874991073754 0.457449496835721 1965 0.119958641437108 2 2 0 -6.76271756743642 LTS-029 chr19 58981185 59084001 102817 * c(MZF1-AS1, TRIM28, SLC27A5, ZNF324, CHMP2A, ZNF446, MZF1, ZBTB45, UBE2M) NA 0 NA 0.459850056286026 339 0.0876675407602785 2 NA NA -5.76590441365432 LTS-029 chr20 68260 76962 8703 * DEFB125 0.405 1 NA 2.53544121973063 11 1.46390674690581 15 15 0 -5.76441197200308 LTS-029 chr20 76963 3233091 3156129 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, NOP56, RBCK1, SLC52A3, TMC2, TBC1D20, SIRPD, C20orf141, C20orf96, SRXN1, DEFB127, DEFB129, SIRPA, STK35, CSNK2A1, FKBP1A, UBOX5, DEFB125, DEFB128, C20orf194, SDCBP2, GNRH2, SIRPB2, IDH3B, RSPO4, TGM6, ITPA, DEFB132, C20orf202, OXT, ANGPT4, PDYN, AVP, TMEM74B, SIRPG, NSFL1C, CPXM1, EBF4, TRIB3, PTPRA, FASTKD5, RAD21L1, NA NA NA NA NA NA NA NA NA LTS-029 VPS16, PCED1A, MRPS26, DDRGK1, SNRPB, SOX12, SNORA51, SNORD110, TCF15, TGM3, ZNF343, NRSN2, DEFB126, FAM110A, SLC4A11, ZCCHC3, SCRT2, PSMF1, SNPH, LZTS3) 0.406023207717251 110 0.0877545771161674 2.27442991177952 3939 0.575668346311539 13 7 6 -6.74751486087087 LTS-029 NA NA NA NA LTS-029 chr20 3233092 3262266 29175 * C20orf194 0 1 NA 2.4467709162062 41 1.58595105497632 14 14 0 -5.76441018102994 LTS-029 chr20 3262267 3628439 366173 * c(C20orf194, ATRN) 0.347814664919283 14 0.145373486404676 2.22651566588965 330 0.782300259310355 12 8 4 -6.73517523652545 LTS-029 chr20 3628440 5937889 2309450 * c(MIR103B2, PCNA-AS1, LINC00658, CENPB, CHGB, RNF24, HSPA12B, PROKR2, ADRA1D, PRNT, LINC00654, C20orf196, PRND, SPEF1, TMEM230, MIR103A2, PCNA, TRMT6, SMOX, C20orf27, AP5S1, PRNP, GPCPD1, MAVS, GFRA4, LOC643406, SIGLEC1, LINC01433, PANK2, ADAM33, MCM8, ATRN, CDS2, RASSF2, CDC25B, SLC23A2) 0.271081595615716 64 0.03129176574076 1.35071413864899 2524 0.407436781810127 8 6 2 -6.77239401498671 LTS-029 chr20 5937890 5939228 1339 * MCM8 NA 0 NA 1.79 1 NA NA NA NA NA LTS-029 chr20 5939229 25753931 19814703 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, LRRN4, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, NA NA NA NA NA NA NA NA NA LTS-029 FOXA2, LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, CRLS1, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, MCM8, ACSS1, CST7, GGTLC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 MGME1, DTD1, ENTPD6, GINS1) 0.256313783355278 181 0.079447685974041 1.41995201595744 7720 0.438412805097634 8 6 2 -6.77610490075624 LTS-029 NA NA NA NA LTS-029 chr20 25753932 25829290 75359 * FAM182B 0.469 1 NA 1.46334487323422 17 0.357848072018083 8 8 0 -5.76445446236686 LTS-029 chr20 25829291 25900162 70872 * FAM182B 0.405968361265663 6 0.0715392666069947 1.98631592124203 8 0.814690727910203 12 7 5 -6.73334857700071 LTS-029 chr20 25900163 25900229 67 * character(0) NA 0 NA 1.128 1 NA NA NA NA NA LTS-029 chr20 25900230 26188981 288752 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.344044207772085 17 0.0949064554923302 0.972444628395853 51 0.838786039230413 6 4 2 -6.73982058924971 LTS-029 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.852 1 NA NA NA NA NA LTS-029 chr20 29625845 29625876 32 * FRG1BP 0.424 1 NA 1.331 1 NA NA NA NA NA LTS-029 chr20 29625877 33880247 4254371 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, MMP24-AS1, PROCR, MMP24, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, MLLT10P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, FRG1BP, NA NA NA NA NA NA NA NA NA LTS-029 C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.316294815217659 110 0.0969898234603975 1.06832027437686 5598 0.289548404796087 6 4 2 -6.86064061497556 LTS-029 NA NA NA NA LTS-029 chr20 33880248 33890361 10114 * character(0) NA 0 NA 0.646 1 NA NA NA NA NA LTS-029 chr20 33890362 35867143 1976782 * c(TGIF2-C20orf24, RBM12, MYL9, CEP250, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, PHF20, SCAND1, ERGIC3, UQCC1, C20orf24, NDRG3, RBL1, TGIF2, RPN2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.321691475196401 16 0.0990397016352533 0.994995688639808 3180 0.241634360622291 6 4 2 -7.03655775743223 LTS-029 chr20 35867144 47309324 11442181 * c(ADA, ACOT8, ZNF663P, LOC100131496, LOC100287792, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, LINC00489, SGK2, WFDC2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, TP53RK, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, SLC32A1, WFDC3, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, EYA2, ZHX3, ZMYND8, WFDC11, WFDC9, L3MBTL1, PPP1R16B, SNORA71B, NA NA NA NA NA NA NA NA NA LTS-029 SNORA71A, GHRH, TP53TG5, WFDC10B, LINC00494, HNF4A, LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, SLC35C2, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, ZNF334, DBNDD2, SULF2, CTNNBL1, EPPIN, RALGAPB, JPH2, SLC12A5, PREX1, NCOA5, RPRD1B, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, SLC13A3, LPIN3, SLPI, BPI, SRC, SNORA71E, SNORA71C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SNORA71D, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, SLC2A10, FAM83D, NCOA3, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40, TTI1, MAFB) 0.340435365115198 172 0.102464538451832 1.06898756123884 9344 0.300108717221963 6 4 2 -6.87534324139353 LTS-029 NA NA NA NA LTS-029 chr20 47309325 52788309 5478985 * c(SNORD12B, MIR3194, MIR4756, ATP9A, TRERNA1, CEBPB, ARFGEF2, TSHZ2, FAM65C, CSE1L, CYP24A1, SLC9A8, ADNP, SNORD12C, MOCS3, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, SUMO1P1, ZFAS1, NFATC2, BCAS4, DDX27, ZFP64, RNF114, SALL4, ZNFX1, PTGIS, PREX1, PTPN1, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, ZNF217, PARD6B, BCAS1, DPM1, B4GALT5, SPATA2) 0.363908955795105 74 0.0498146732002691 1.01729542419755 3647 0.270625696106464 6 4 2 -7.14292213162974 LTS-029 chr20 52788310 52788389 80 * CYP24A1 NA 0 NA 1.389 1 NA NA NA NA NA LTS-029 chr20 52788390 62872290 10083901 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ARFRP1, OGFR-AS1, RGS19, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, GCNT7, NA NA NA NA NA NA NA NA NA LTS-029 CBLN4, CTCFL, SAMD10, ABHD16B, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, GNAS, SLCO4A1, NPBWR2, LINC00176, C20orf197, MIR646HG, KCNQ2, FAM209B, LAMA5, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MYT1, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, LIME1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 UCKL1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, ARFGAP1, DOK5, SLC2A4RG, PSMA7, PMEPA1, CASS4, RAB22A, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, AURKA, TAF4, TCEA2, MIR647, TFAP2C, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, ZGPAT, RAE1, HELZ2, STX16, TNFRSF6B, VAPB, OSBPL2) 0.346312934018408 274 0.080437317715273 1.07292530883783 9416 0.284395570508423 6 4 2 -6.84730240828128 LTS-029 NA NA NA NA LTS-029 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.0735025565952 119 0.410792124080618 6 NA NA -5.76487431317639 LTS-029 chr21 9825764 9907198 81435 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.22 1 NA 0.454150071208048 21 0.491321168357512 2 2 0 -5.76441041321764 LTS-029 chr21 9907199 9908292 1094 * TEKT4P2 0.385313919558034 9 0.0603215918593371 1.62166224048886 22 0.734127405576885 13 8 5 -6.73347026775178 LTS-029 chr21 9908293 9908326 34 * TEKT4P2 0.281 1 NA 2.524 1 NA NA NA NA NA LTS-029 chr21 9908327 11059877 1151551 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.2997000797672 33 0.0975147813193342 1.41853356775376 144 1.07596179339102 7 5 2 -6.74163000919336 LTS-029 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.47017183622655 5 0.168689655877294 8 NA NA -5.76461636584123 LTS-029 chr21 14745307 14756794 11488 * character(0) 0.471 1 NA 1.2931566169714 9 0.783438095831445 7 7 0 -5.76441106016831 LTS-029 chr21 14756795 17116309 2359515 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, USP25, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.457102923235194 17 0.0280255922957823 1.30874141187397 604 0.380007890937441 8 4 4 -7.71288151976518 LTS-029 chr21 17116310 22643688 5527379 * c(LINC01549, BTG3, CHODL, CXADR, C21orf91-OT1, USP25, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, NCAM2, CHODL-AS1, C21orf91, TMPRSS15) 0.416069884066639 13 0.131917272055886 1.53014330941584 730 0.589938848575774 9 5 4 -6.75918574584525 LTS-029 chr21 22643689 22643987 299 * NCAM2 NA 0 NA 0.952 1 NA NA NA NA NA LTS-029 chr21 22643988 22912031 268044 * c(RNU6-67P, NCAM2) 0.39036830334151 2 0.0162634559672906 1.1246308980948 122 0.331205456778187 5 3 2 -6.97366090775544 LTS-029 chr21 22912032 22915047 3016 * NCAM2 0.341 1 NA 1.21284469353686 59 0.410759493836404 7 7 0 -5.76444261366919 LTS-029 chr21 22915048 27852724 4937677 * c(MIR155HG, CYYR1, GABPA, D21S2088E, LINC00515, LOC339622, APP, LINC00317, MIR155, ATP5J, LINC00158, LINC00308, MRPL39, JAM2) 0.245780333448479 9 0.16696015825473 1.09517128550768 571 0.377488804590515 6 5 1 -6.77866965197534 LTS-029 chr21 27852725 28212760 360036 * c(CYYR1, ADAMTS1) 0.344 1 NA 1.11450913442381 79 0.36782522256159 6 6 0 -5.76441261569969 LTS-029 chr21 28212761 41239572 13026812 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, MIR4759, RWDD2B, BRWD1-AS1, OLIG2, DSCR4, DSCR3, B3GALT5, USP16, CCT8, ADAMTS5, LINC00310, B3GALT5-AS1, OLIG1, LINC00161, KRTAP13-1, TCP10L, LCA5L, IGSF5, RCAN1, DYRK1A, LINC00189, ERG, ETS2, MORC3, CLDN14, LINC00314, KRTAP15-1, DSCR9, NA, DSCR10, LTN1, NA NA NA NA NA NA NA NA NA LTS-029 GART, CLDN17, LINC00307, KRTAP13-4, GRIK1, N6AMT1, DONSON, HUNK, HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, KRTAP26-1, LINC00114, PCP4, PIGP, RIPPLY3, ATP5O, BRWD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00113, SETD4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, MAP3K7CL, BACH1, SCAF4, EVA1C, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.338540485486809 212 0.083308531168575 1.05622252324757 8951 0.788275736119543 6 4 2 -6.78154014099324 LTS-029 NA NA NA NA LTS-029 chr21 41239573 41270309 30737 * PCP4 NA 0 NA 1.354 1 NA NA NA NA NA LTS-029 chr21 41270310 41434841 164532 * c(DSCAM, PCP4) 0.312045683461841 4 0.220081045677874 1.43837204960826 108 0.662799589582066 7 5 2 -6.73649025861977 LTS-029 chr21 41434842 42080764 645923 * c(DSCAM-AS1, MIR4760, DSCAM-IT1, DSCAM) NA 0 NA 1.51314917433658 171 0.379443323535563 8 NA NA -5.76977718868222 LTS-029 chr21 42080765 42218501 137737 * DSCAM NA 0 NA 0.598 1 NA NA NA NA NA LTS-029 chr21 42218502 42218928 427 * DSCAM 0.027 1 NA 1.0668631577964 7 0.493086778801228 6 6 0 -5.7644122576012 LTS-029 chr21 42218929 48063476 5844548 * c(LOC100129027, MIR3197, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, NA NA NA NA NA NA NA NA NA LTS-029 KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.0784410280449497 276 0.0409815318796677 0.781447889792677 7866 0.294411319102947 4 4 0 -6.73377113436086 LTS-029 NA NA NA NA LTS-029 chr21 48063477 48084993 21517 * PRMT2 NA 0 NA 0.710938280227836 77 0.115113761378835 4 NA NA -5.77390305807925 LTS-029 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.301 1 NA 0.711579531694055 5 0.435991743041081 4 4 0 -5.78641172482223 LTS-029 chr22 16887896 18213397 1325502 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, SLC25A18) 0.138179170031885 47 0.0516917409041892 0.461498553948072 1220 0.170819406612636 2 2 0 -6.74311610616862 LTS-029 chr22 18213398 18216884 3487 * BCL2L13 NA 0 NA 0.72 1 NA NA NA NA NA LTS-029 chr22 18216885 18323522 106638 * c(MIR3198-1, MICAL3, BID) 0.0904697230424729 7 0.0511100586503097 0.783279426280802 257 0.230959576411726 4 4 0 -6.76733862138257 LTS-029 chr22 18323523 18323609 87 * MICAL3 0.136 1 NA 0.483 1 NA NA NA NA NA LTS-029 chr22 18323610 24340955 6017346 * c(DDTL, MIR301B, FLJ41941, MIR1286, MIR1306, IGLL5, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, C22orf39, TANGO2, ZNF280A, COMT, CRKL, ZNF280B, LINC00895, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, TSSK2, SDF2L1, PPIL2, GSTTP1, DGCR11, DGCR9, POM121L1P, DGCR5, DGCR10, FBXW4P1, POM121L4P, RGL4, GGT3P, TRMT2A, RSPH14, GNAZ, LOC284865, MIF-AS1, GSC2, POM121L8P, YPEL1, NA NA NA NA NA NA NA NA NA LTS-029 ZDHHC8, VPREB3, SERPIND1, IGLL1, PI4KAP2, CCDC188, LRRC74B, BCRP2, CHCHD10, MIR130B, MIR185, ARVCF, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, TUBA8, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, MRPL40, RTN4R, SLC7A4, SLC25A1, SMARCB1, SLC2A11, TBX1, MIR648, CLDN5, MIR650, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, VPREB1, ZNF70, ZNF74, C22orf29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, TMEM191A, KLHL22, DGCR6L, RIMBP3, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20, DGCR2) 0.147101702661123 200 0.061089346997516 0.459770589754403 7385 0.197020181349487 2 2 0 -6.77260735575903 LTS-029 NA NA NA NA LTS-029 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 0.756 1 NA NA NA NA NA LTS-029 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.753066726021789 57 0.148174469997018 4 NA NA -5.76635869955607 LTS-029 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.393 1 NA NA NA NA NA LTS-029 chr22 24400149 31859859 7459711 * c(LOC100128531, MIR548J, MIR3200, MIR3199-2, MIR3199-1, MIR3653, MIR3928, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, SEC14L2, SEZ6L, PATZ1, PITPNB, OSBP2, TFIP11, TMEM211, C22orf31, RHBDD3, SEC14L3, GGT1, NA NA NA NA NA NA NA NA NA LTS-029 GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, SLC35E4, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, BCRP3, ADORA2A-AS1, POM121L10P, SMTN, GATSL3, GSTTP2, SNRPD3, TCN2, TOP1P2, SEC14L6, XBP1, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 HPS4, IGLL3P, LRP5L, RNF185, GAL3ST1) 0.133399783354181 144 0.0613794657128002 0.4467193890575 7853 0.148960084369813 2 2 0 -6.78053446247227 LTS-029 NA NA NA NA LTS-029 chr22 31859860 31998612 138753 * c(EIF4ENIF1, SFI1) 0.052 1 NA 0.435261011818222 123 0.12061163818814 2 2 0 -5.77415977740983 LTS-029 chr22 31998613 32022287 23675 * c(PISD, SFI1) 0.117077416130766 2 0.0424264068711928 0.475383150840422 160 0.107428839801374 2 2 0 -6.84309444891804 LTS-029 chr22 32022288 32870806 848519 * c(RFPL3S, RFPL3, RFPL2, C22orf42, PISD, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, LOC339666, RTCB, SLC5A1, SLC5A4, YWHAH, DEPDC5) 0.0368066606524156 8 0.0369727216046796 0.757727111653736 1154 0.305884638579791 5 5 0 -7.32149495955909 LTS-029 chr22 32870807 32870885 79 * FBXO7 NA 0 NA 1.148 1 NA NA NA NA NA LTS-029 chr22 32870886 32929963 59078 * c(FBXO7, SYN3) 0.053636791515424 2 0.0197989898732233 1.10554349523053 121 0.26414567001226 6 6 0 -6.73614645051579 LTS-029 chr22 32929964 38544667 5614704 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, LL22NC01-81G9.3, MIR4534, MIR4764, CACNG2, IFT27, TRIOBP, CDC42EP1, ELFN2, C1QTNF6, ANKRD54, CSF2RB, TMPRSS6, GCAT, SLC16A8, RBFOX2, RASD2, SH3BP1, APOL2, TXN2, GGA1, CYTH4, CARD10, H1F0, HMOX1, TEX33, IL2RB, LGALS1, LGALS2, MB, MCM5, MFNG, MPST, MYH9, NCF4, EIF3L, POLR2F, PDXP, PVALB, RAC2, SOX10, SSTR3, TIMP3, MIR658, MIR659, TST, NOL12, KCTD17, FOXRED2, BAIAP2L2, NA NA NA NA NA NA NA NA NA LTS-029 APOL6, APOL5, APOL4, APOL3, SYN3, PLA2G6, C22orf23, GALR3, MICALL1, APOL1, EIF3D, ISX, LARGE1, PICK1) 0.0798867064416382 132 0.0329456579463154 0.765679763385481 5106 0.294540380650633 4 4 0 -6.75800713354605 LTS-029 NA NA NA NA LTS-029 chr22 38544668 38559457 14790 * PLA2G6 NA 0 NA 1.112 1 NA NA NA NA NA LTS-029 chr22 38559458 38644096 84639 * c(MAFF, TMEM184B, PLA2G6) 0.0505567196622307 2 0.00212132034355964 1.05725631263775 167 0.230042758170167 7 7 0 -7.55336370149608 LTS-029 chr22 38644097 38689210 45114 * c(CSNK1E, TMEM184B) NA 0 NA 0.626 1 NA NA NA NA NA LTS-029 chr22 38689211 51206426 12517216 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, LOC100506472, NUP50-AS1, MIR4763, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, TAB1, SLC25A17, DDX17, NUP50, TOB2, KDELR3, DMC1, RABL2B, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, TNFRSF13C, CPT1B, APOBEC3D, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, NA NA NA NA NA NA NA NA NA LTS-029 CYP2D7, CYP2D6, ADSL, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, CBX6, NPTXR, CBX7, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, CBY1, SUN2, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, RPL23AP82, PARVB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 NCAPH2, LINC00634, C22orf34, KCNJ4, CHKB-CPT1B, OGFRP1, LINC00207, LOC400927, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, MGAT3, SHISA8, ODF3B, NAGA, ATF4, NDUFA6, SNU13, ACR, ACO2, GTSE1, PDGFB, PMM1, A4GALT, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, TOMM22, MKL1, RANGAP1, APOBEC3G, RPL3, MAPK12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SREBF2, ST13, TCF20, TEF, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, ALG12, CRELD2, C22orf46, CCDC134, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, LDOC1L, POLDIP3, PHF5A, KIAA1644, SHANK3, TUBGCP6, CACNA1I, NA, LMF2, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, GTPBP1, APOBEC3B, CELSR1, PPP6R2, ZBED4, JOSD1, RBX1, SCO2) 0.0816438296694168 446 0.0439934739133462 0.763643895411375 15133 0.246426965976978 4 4 0 -6.82729351203508 LTS-029 NA NA NA NA LTS-029 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.634909221915256 49 0.139179492463685 3 NA NA -5.76469089119109 LTS-029 chrX 2699993 2700027 35 * XG 0.055 1 NA 1.304 1 NA NA NA NA NA LTS-029 chrX 2700028 12633047 9933020 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.131871863090272 42 0.0702330325544086 0.475153283449927 2767 0.152320000739925 2 2 0 -7.24159308880258 LTS-029 chrX 12633048 12692922 59875 * FRMPD4 NA 0 NA 0.362 1 NA NA NA NA NA LTS-029 chrX 12692923 16887840 4194918 * c(GS1-600G8.3, LINC01203, PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, GRPR, CA5BP1, TLR8-AS1, TLR7, TLR8, PIGA, GEMIN8, TXLNG, PRPS2, CTPS2, TMEM27, ACE2, RBBP7, TRAPPC2, MAGEB17, BMX, TMSB4X, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A, SYAP1, FRMPD4) 0.129121439623796 38 0.0592302688755239 0.440286269116206 2878 0.129680252301962 2 2 0 -6.86961526857939 LTS-029 chrX 16887841 16888148 308 * RBBP7 NA 0 NA 0.523 1 NA NA NA NA NA LTS-029 chrX 16888149 23422387 6534239 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, PTCHD1, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, RBBP7, RPS6KA3, RS1, SCML1, SMS, CDKL5, LOC729609, REPS2) 0.0961478113626288 19 0.0854675821720679 0.484247358928889 3603 0.16129938354691 2 2 0 -7.43855126136496 LTS-029 chrX 23422388 23682335 259948 * character(0) NA 0 NA 0.619 1 NA NA NA NA NA LTS-029 chrX 23682336 24234225 551890 * c(ZFX-AS1, PRDX4, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.0689192821287049 9 0.0426490849191919 0.741130720261749 667 0.220850670421944 4 4 0 -6.78352055617812 LTS-029 chrX 24234226 24326327 92102 * ZFX NA 0 NA 0.559 1 NA NA NA NA NA LTS-029 chrX 24326328 40482861 16156534 * c(SUPT20HL1, ATP6AP2, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, CYBB, FAM47A, MAGEB6, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, TAB3, HYPM, GK, LINC01281, CFAP47, MAGEB18, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, OTC, PDK3, FTHL17, POLA1, BCOR, PRRG1, MID1IP1, RPGR, NA, SCARNA23, DYNLT3, TSPAN7, XK, CXorf21, TMEM47, SRPX, SYTL5, PCYT1B) 0.129325912062237 29 0.0285125069782927 0.489879138658277 3820 0.133206982764628 2 2 0 -8.95107044359917 LTS-029 chrX 40482862 40534461 51600 * c(CXorf38, MPC1L, MED14) 0.040708019096947 3 0.0964174949546675 0.438944424049057 217 0.237292859247107 4 4 0 -7.0025580907445 LTS-029 chrX 40534462 41192947 658486 * c(LOC100132831, DDX3X, USP9X, MED14) NA 0 NA 0.457508269347134 379 0.109985340501791 2 NA NA -5.76679142436218 LTS-029 chrX 41192948 41192966 19 * DDX3X NA 0 NA 0.599 1 NA NA NA NA NA LTS-029 chrX 41192967 41203119 10153 * DDX3X 0.447 1 NA 0.781418076835866 51 0.193688551292948 4 4 0 -5.76441308901713 LTS-029 chrX 41203120 52891565 11688446 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, FUNDC1, USP27X-AS1, DDX3X, XAGE3, XAGE5, NUDT10, ELK1, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPR82, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, GPR34, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIR188, NA NA NA NA NA NA NA NA NA LTS-029 MIR221, MIR222, MAOA, MAOB, NDP, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, NDUFB11, NUDT11, OTUD5, KRBOX4, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, NYX, RP2, DUSP21, ZNF674, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, LINC01545, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, KDM6A, WAS, ZNF182, ZNF41, ZNF157, NA NA NA NA NA NA NA NA NA NA NA NA LTS-029 CACNA1F, CXorf36, MAGIX, EFHC2, PPP1R2P9, MAGED4B, USP11, RBM10, UXT, SLC9A7, CCNB3, INE1, CASK, PAGE1, AKAP4, PPP1R3F, CCDC120, RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.423800186304031 64 0.139088515267671 0.80691570062294 7148 0.212379296276788 4 2 2 -6.8515562000685 LTS-029 NA NA NA NA LTS-029 chrX 52891566 52891584 19 * XAGE3 0.003 1 NA 0.011 1 NA NA NA NA NA LTS-029 chrX 52891585 53584475 692891 * c(HUWE1, RIBC1, XAGE3, IQSEC2, HSD17B10, MIRLET7F2, MIR98, GPR173, TSPYL2, FAM156B, KDM5C, SMC1A) 0.319253313712346 5 0.248091313834241 0.806523577624874 1091 0.250401748632932 4 3 1 -6.74691971434806 LTS-029 chrX 53584476 53585558 1083 * HUWE1 NA 0 NA 1.188 1 NA NA NA NA NA LTS-029 chrX 53585559 54161565 576007 * c(HUWE1, PHF8, FAM120C) 0 4 0 1.07244504649596 664 0.257675167731676 0 0 0 -Inf LTS-029 chrX 54161566 54472506 310941 * c(FGD1, FAM120C, WNK3, TSR2) 0.382 1 NA 1.06423136511405 366 0.202662625361811 6 6 0 -5.77460173471619 LTS-029 chrX 54472507 57313089 2840583 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, USP51, SPIN3, PAGE2, ALAS2, FGD1, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, GNL3L, LINC01420, SNORA11, TRO, FAM104B, PAGE5) 0.335922730422777 15 0.16167068232617 1.13604927576826 1381 0.306634792408792 6 4 2 -6.74318515615225 LTS-029 chrX 57313090 57937169 624080 * c(FAAH2, ZXDB, ZXDA) NA 0 NA 1.10975209928398 277 0.240135517001133 6 NA NA -5.7646082718167 LTS-029 chrX 61999880 63405763 1405884 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0.368 1 NA 1.17441899966972 257 0.318065184858491 6 6 0 -5.78611503335877 LTS-029 chrX 63405764 65819679 2413916 * c(VSIG4, AMER1, ASB12, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, HEPH) 0.33747703233797 8 0.033469602413448 1.12449073575957 989 0.354114628246484 6 4 2 -6.81271247374455 LTS-029 chrX 65819680 65819820 141 * EDA2R NA 0 NA 0.565 1 NA NA NA NA NA LTS-029 chrX 65819821 67433901 1614081 * c(AR, OPHN1, EDA2R) 0.227840511428011 3 0.260674126065477 0.963468761658567 378 0.448926099026318 5 4 1 -6.73500111754383 LTS-029 chrX 67433902 67454238 20337 * OPHN1 NA 0 NA 1.178 1 NA NA NA NA NA LTS-029 chrX 67454239 70349947 2895709 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, FAM155B, YIPF6, SNX12, DGAT2L6, RAB41, IGBP1, IL2RG, ARR3, FOXO4, OPHN1, P2RY4, PDZD11, GDPD2, TEX11, PJA1, SLC7A3, STARD8, MED12) 0.304262604322028 25 0.143434514674816 1.1301254953858 2114 0.310575697877656 6 4 2 -6.79553934355945 LTS-029 chrX 70349948 70352417 2470 * MED12 0.319 1 NA 1.19908507133182 15 0.273693641730694 7 7 0 -5.76449745411577 LTS-029 chrX 70352418 71131182 778765 * c(ITGB1BP2, GJB1, INGX, CXCR3, NHSL2, LINC00891, NONO, NLGN3, BCYRN1, TAF1, OGT, ZMYM3, ACRC, MED12) 0.0606689197533145 9 0.107666666666667 1.08401066934268 1085 0.365937526708919 6 6 0 -6.73759278262047 LTS-029 chrX 71131183 71800299 669117 * c(RGAG4, NHSL2, FLJ44635, RPS26P11, CITED1, PHKA1, PIN4, ERCC6L, HDAC8, RPS4X) 0.394 1 NA 1.10965735684498 583 0.221592853360194 6 6 0 -5.7646673795034 LTS-029 chrX 71800300 74670788 2870489 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, UPRT, ZDHHC15, ABCB7, PABPC1L2A, KIAA2022, ZCCHC13, MIR374A, NAP1L2, RLIM, PHKA1, CHIC1, JPX, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, MIR421, XIST, TSIX) 0.27539251426364 12 0.166125066979032 1.11710203623979 1668 0.354225626555116 6 5 1 -6.84354162890715 LTS-029 chrX 74670789 74698663 27875 * ZDHHC15 NA 0 NA 1.715 1 NA NA NA NA NA LTS-029 chrX 74698664 83573556 8874893 * c(MIR4328, CYSLTR1, COX7B, HDX, MAGEE2, CYLC1, ZDHHC15, FAM46D, ZCCHC5, BRWD3, RPS6KA6, P2RY10, LPAR4, TTC3P1, PGAM4, MIR384, TBX22, PBDC1, TAF9B, PGK1, ATP7A, POU3F4, ATRX, MAGEE1, SH3BGRL, HMGN5, MAGT1, GPR174, FGF16, ITM2A) 0.241063482439713 27 0.117823507490564 1.30778769865586 2148 0.41022658623652 7 6 1 -6.91746658419755 LTS-029 chrX 83573557 84189813 616257 * c(UBE2DNL, HDX) 0.315 1 NA 1.34135691897613 135 0.291366408253397 7 7 0 -5.77348241365118 LTS-029 chrX 84189814 85211313 1021500 * c(UBE2DNL, CHM, APOOL, SATL1, ZNF711, POF1B) 0.302110468244317 4 0.0148632656797444 1.31545711440385 464 0.274937268348208 7 5 2 -6.7778412961189 LTS-029 chrX 85211314 91543035 6331722 * c(CHM, DACH2, PABPC5, PCDH11X, CPXCR1, KLHL4, TGIF2LX) 0.356303173287304 15 0.044870713749404 1.09847892988376 676 0.432380520951272 6 4 2 -6.75101224191 LTS-029 chrX 91543036 91642693 99658 * PCDH11X NA 0 NA 1.293 1 NA NA NA NA NA LTS-029 chrX 91642694 99547512 7904819 * c(DIAPH2, PCDH11X, FAM133A, RPA4, XRCC6P5, NAP1L3, PCDH19, BRDTP1) 0.307853870195426 6 0.080044362699693 1.39241753608739 598 0.728590049903638 7 5 2 -6.79435506588099 LTS-029 chrX 99547513 106313674 6766162 * c(ARMCX4, LINC00630, ARMCX5-GPRASP2, RPL36A-HNRNPH2, TMSB15A, GPRASP2, MUM1L1, FAM199X, TCEAL2, RAB40A, CSTF2, TCEAL6, H2BFWT, TIMM8A, DRP2, NRK, TMEM31, CENPI, IL1RAPL2, BEX3, NOX1, GLA, SRPX2, RAB40AL, H2BFM, LOC286437, TMSB15B, HNRNPH2, BEX5, TCEAL5, MORF4L2-AS1, ARL13A, SLC25A53, XKRX, GLRA4, TCEAL9, RAB9B, ARMCX1, ARMCX3, PLP1, TAF7L, ARMCX6, TBC1D8B, CXorf57, RBM41, BEX1, NXF5, NXF4, NXF3, TEX13A, NA NA NA NA NA NA NA NA NA LTS-029 BEX4, TCEAL7, PCDH19, TMEM35A, RPL36A, TNMD, ZCCHC18, ARMCX5, SERPINA7, BTK, TSPAN6, RNF128, MORC4, TCEAL4, TRMT2B, ESX1, BHLHB9, ZMAT1, BEX2, TCEAL3, CLDN2, TCEAL8, RIPPLY1, TCEAL1, SYTL4, MORF4L2, GPRASP1, ARMCX2) 0.329589018137386 47 0.124393258262667 1.1389614500329 4791 1.3714810285987 6 4 2 -6.74957850256334 LTS-029 NA NA NA NA LTS-029 chrX 106313675 106331676 18002 * RBM41 NA 0 NA 0.777 1 NA NA NA NA NA LTS-029 chrX 106331677 111025385 4693709 * c(MIR3978, MID2, ATG4A, COL4A5, COL4A6, PIH1D3, DCX, TSC22D3, ACSL4, KCNE5, GUCY2F, VSIG1, LINC00890, PAK3, NUP62CL, RBM41, NXT2, TEX13B, PRPS1, PSMD10, RGAG1, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, TMEM164, IRS4, CHRDL1, AMMECR1) 0.365475940120505 19 0.165764752635698 0.928131266103836 2993 0.221093411291002 5 3 2 -6.79080644202284 LTS-029 chrX 111025386 111078115 52730 * TRPC5 NA 0 NA 1.043 1 NA NA NA NA NA LTS-029 chrX 111078116 113997823 2919708 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, AMOT, HTR2C, ZCCHC16, LHFPL1, SNORA35, TRPC5) 0.23879869872192 3 0.223421127022491 1.09710158510473 424 0.282636291696914 6 5 1 -6.7543424646056 LTS-029 chrX 113997824 119761071 5763248 * c(ZBTB33, MIR1277, SLC25A5-AS1, PGRMC1, SLC6A14, RBMXL3, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, AGTR2, CT83, SLC25A43, SEPT6, ATP1B4, SNORA69, MCTS1, C1GALT1C1, SLC25A5, HTR2C, SOWAHD, IL13RA1, IL13RA2, LAMP2, NDUFA1, LUZP4, PLS3, WDR44, TMEM255A, MIR448, NKRF, KIAA1210, LRCH2, RPL39, CXorf56, UPF3B, UBE2A, MIR766, RNF113A, NKAP, LONRF3, CUL4B, KLHL13) 0.385673269617373 45 0.115380626141865 0.88634083121431 3264 0.265784651263491 5 3 2 -6.97103156515111 LTS-029 chrX 119761072 119971864 210793 * C1GALT1C1 NA 0 NA 1.146 1 NA NA NA NA NA LTS-029 chrX 119971865 127186474 7214610 * c(TEX13C, PRR32, TENM1, STAG2, DCAF12L1, ACTRT1, CT47A11, GLUD2, GRIA3, XIAP, DCAF12L2, SH2D1A, THOC2, CT47B1, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1) 0.213583568445357 11 0.160919912322305 1.08645949178259 1290 0.348109306152558 6 5 1 -6.76083974221388 LTS-029 chrX 128581079 131212867 2631789 * c(ENOX2, UTP14A, GPR119, ARHGAP36, ELF4, FIRRE, OR13H1, IGSF1, OCRL, ZDHHC9, RBMX2, STK26, SASH3, ZNF280C, BCORL1, SMARCA1, XPNPEP2, APLN, SLC25A14, FRMD7, AIFM1, RAB33A) 0.293955575755187 15 0.122300488649104 1.22777866881803 2035 0.396065077616358 7 5 2 -6.75715551408478 LTS-029 chrX 131212868 131842702 629835 * c(HS6ST2-AS1, MBNL3, RAP2C, HS6ST2, FRMD7) 0 2 0 0.915025856117248 383 0.473945789072682 0 0 0 -Inf LTS-029 chrX 131842703 132090776 248074 * HS6ST2 NA 0 NA 1.359 1 NA NA NA NA NA LTS-029 chrX 132090777 140336570 8245794 * c(MIR450B, MIR934, LINC00892, LINC00633, FGF13-AS1, MIR320D2, LINC00629, CDR1, SLC9A6, PLAC1, ADGRG4, LINC00889, FAM122B, FAM122C, NA, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, LDOC1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, ATP11C, LINC00632, HPRT1, CCDC160, CXorf66, LOC389895, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, MIR424, TFDP3, VGLL1, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, NA NA NA NA NA NA NA NA NA LTS-029 MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, SMIM10, SMIM10L2B, SPANXC, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, MIR503HG, FAM127A, HS6ST2, MMGT1, ARHGEF6, CD40LG) 0.325050693763499 38 0.125901008778245 1.08588348696209 3402 0.316586880718987 6 4 2 -6.79242224238674 LTS-029 NA NA NA NA LTS-029 chrX 140336571 140714017 377447 * c(SPANXA2-OT1, SPANXC) NA 0 NA 1.378 1 NA NA NA NA NA LTS-029 chrX 140714018 148074404 7360387 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR514B, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, FMR1, AFF2, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SLITRK2, TMEM257, MAGEC1) 0.324914696264206 17 0.0919701837873686 1.19046299253085 1165 0.48716627999434 6 4 2 -6.85315783328917 LTS-029 chrX 148074405 149102163 1027759 * c(LINC00893, MAGEA8-AS1, AFF2, IDS, MAGEA8, MAGEA11, CXorf40B, TMEM185A, CXorf40A) 0.148812889237151 2 0.226274169979695 1.04029940853001 642 0.339073409195703 6 5 1 -6.79407844689953 LTS-029 chrX 149102164 149937302 835139 * c(LINC00894, MIR2114, MAMLD1, MTM1, CXorf40B, CD99L2, MTMR1) 0.297988289544069 3 0.0100166528008778 1.31708140844596 417 0.318119621154953 7 5 2 -7.09160081647468 LTS-029 chrX 149937303 153707443 3770141 * c(CSAG4, NA, NA, MIR718, MIR3202-2, MIR4330, MIR3202-1, MAGEA10-MAGEA5, BCAP31, CETN2, ZNF275, TREX2, PNMA5, CNGA2, PASD1, PNCK, ZFP92, TEX28, CSAG1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IRAK1, L1CAM, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA10, MAGEA12, MECP2, ATP2B3, NSDHL, PLXNB3, ATP6AP1, NA NA NA NA NA NA NA NA NA LTS-029 AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, RPL10, BGN, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, LAGE3, TKTL1, CD99L2, FATE1, FAM50A, FAM58A, GPR50) 0.342677927296442 77 0.110233253285341 1.13722050998891 5045 0.367965498008455 6 4 2 -6.74144383663871 LTS-029 NA NA NA NA LTS-029 chrX 153707444 154507173 799730 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, IKBKG) 0.301524003713652 19 0.152006963521624 1.06042578169813 1291 0.408941215413329 6 4 2 -6.80015701099153 LTS-029 chrX 154507174 154564019 56846 * CLIC2 NA 0 NA 1.00949555650528 37 0.194948395420113 5 NA NA -5.76768212065738 LTS-029 chrX 154564020 154577837 13818 * character(0) NA 0 NA 0.651 1 NA NA NA NA NA LTS-029 chrX 154577838 154774986 197149 * TMLHE NA 0 NA 0.987987587430492 67 2.13435854358694 5 NA NA -5.76444935007863 LTS-029 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.144980509514155 25 0.154512275671978 0 NA NA -6.21772214120117 LTS-029 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.113 1 NA 0.590618512206298 19 0.444846047355659 3 3 0 -5.81702412633924 LTS-029 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 1.00158226193703 3 0.195721741255283 5 NA NA -5.7644144995981 LTS-029 chr1 14677 1582106 1567430 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, NA NA NA NA NA NA NA NA NA LTS-030 PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.149133596482452 64 0.052042174213088 0.704543060154758 2959 0.417433221669195 2 2 0 -6.92788536446704 LTS-030 NA NA NA NA LTS-030 chr1 1582107 1582202 96 * CDK11B 0.407 1 NA 0.583211120505944 3 0.151737712297679 2 2 0 -5.76441185777494 LTS-030 chr1 1582203 1639726 57524 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.312739630622756 14 0.115384117215042 0.655202932566645 263 0.509726320894723 4 3 1 -6.76472385094562 LTS-030 chr1 1639727 1643791 4065 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.004 1 NA NA NA NA NA LTS-030 chr1 1643792 1650967 7176 * c(CDK11A, SLC35E2B, CDK11B) 0.444113904033087 11 0.0459452243042042 0.526858683161161 56 0.327029566457931 2 1 1 -6.74219633270487 LTS-030 chr1 1650968 1658945 7978 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.096 1 NA 0.489516246466811 29 0.304438346626294 2 2 0 -5.7665064221415 LTS-030 chr1 1658946 1663955 5010 * c(SLC35E2B, SLC35E2) 0.199044095337317 8 0.0718111362235293 0.331742175745535 77 0.229522913763711 6 5 1 -6.87405061715988 LTS-030 chr1 1663956 12721958 11058003 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, CLCN6, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, ARHGEF16, NA NA NA NA NA NA NA NA NA LTS-030 GNB1, LOC284661, UBIAD1, ZBTB48, C1orf174, TMEM52, AADACL4, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, MIR34A, LINC00982, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, CASZ1, VPS13D, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, SLC2A5, NADK, SRM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 SNORA59B, MIR551A, TNFRSF1B, TP73, SLC35E2B, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, DHRS3, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, SLC35E2, MFN2) 0.149278275434413 332 0.054908593962116 0.659476520077282 12345 0.393817407236345 2 2 0 -7.15612933394739 LTS-030 NA NA NA NA LTS-030 chr1 12721959 12725922 3964 * AADACL4 NA 0 NA 0.354 1 NA NA NA NA NA LTS-030 chr1 12725923 13910648 1184726 * c(PDPN, LRRC38, AADACL3, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, C1orf158) 0.318056600926887 12 0.121315141826417 0.453445488665753 403 0.32242100037476 1 1 0 -7.03922174429179 LTS-030 chr1 13910649 15911597 2000949 * c(PDPN, CTRC, FHAD1, TMEM51-AS1, KAZN, DNAJC16, CELA2B, TMEM51, CELA2A, PRDM2, EFHD2, AGMAT, CASP9) 0.159619260059673 44 0.0503469358897676 0.629851576849997 1364 0.521239636139557 2 2 0 -6.75120696373402 LTS-030 chr1 15911598 16360347 448750 * c(CLCNKA, CLCNKB, C1orf64, SPEN, PLEKHM2, DNAJC16, HSPB7, SLC25A34, TMEM82, UQCRHL, FBLIM1, RSC1A1, FLJ37453, ZBTB17, AGMAT, DDI2) 0.291 1 NA 0.633716691210578 1021 0.282356648378405 2 2 0 -5.77523659538708 LTS-030 chr1 16360348 16975349 615002 * c(MST1P2, CROCCP3, CLCNKA, CLCNKB, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.399962234831732 35 0.101123188041437 0.642263608624383 986 0.362686751809916 2 1 1 -6.83328203461087 LTS-030 chr1 16975350 16978916 3567 * MST1P2 0.261509248203058 4 0.122263376909577 0.18523699823896 89 0.166204845181474 1 1 0 -6.78522364229245 LTS-030 chr1 16978917 17009683 30767 * character(0) NA 0 NA 0.688 1 NA NA NA NA NA LTS-030 chr1 17009684 17017709 8026 * character(0) 0.212148913931439 5 0.110861174448046 0.483193079044531 70 0.183684720098095 1 1 0 -6.8009439577722 LTS-030 chr1 17017710 17022913 5204 * ESPNP NA 0 NA 1.308 1 NA NA NA NA NA LTS-030 chr1 17022914 17046605 23692 * ESPNP 0.325444742127156 14 0.0613612971767122 1.38514455782581 72 0.641474172699885 10 7 3 -6.74965192974305 LTS-030 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.297 1 NA NA NA NA NA LTS-030 chr1 17081542 17083859 2318 * c(MST1L, CROCC) 0.204088411408675 8 0.122862219579495 0.396820044535926 73 0.159380594479062 2 2 0 -6.80233255230591 LTS-030 chr1 17083860 17084058 199 * c(MST1L, CROCC) NA 0 NA 1.057 1 NA NA NA NA NA LTS-030 chr1 17084059 17249364 165306 * c(MST1L, CROCC) 0.39541619102231 23 0.090145052192467 0.744393455536552 138 0.417044039242276 3 2 1 -6.77134244932262 LTS-030 chr1 17249365 17250837 1473 * CROCC NA 0 NA 1.512 1 NA NA NA NA NA LTS-030 chr1 17250838 17273493 22656 * CROCC 0.446241621503572 7 0.0532679658939234 1.66114315632529 60 0.709984373783641 8 4 4 -6.74540614703542 LTS-030 chr1 17273494 17280937 7444 * CROCC NA 0 NA 1.5377121567061 23 0.529921304471528 7 NA NA -5.76443664616443 LTS-030 chr1 17280938 17281198 261 * CROCC NA 0 NA 0.579 1 NA NA NA NA NA LTS-030 chr1 17281199 17301672 20474 * c(MFAP2, CROCC) 0.132 1 NA 0.733053679180154 97 0.406245468121696 3 3 0 -5.76496885225434 LTS-030 chr1 17301673 21625613 4323941 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, PADI2, IFFO2, KLHDC7A, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, ATP13A2, PADI4, AKR7L, TMCO4, PLA2G2D, PADI1, PLA2G2E, HTR6, LINC01141, PADI6, PLA2G2C, SH2D5, MFAP2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, RNF186, PQLC2, ARHGEF10L, CAMK2N1, RCC2, KIF17, SDHB, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, ACTL8, CAPZB, NA NA NA NA NA NA NA NA NA LTS-030 IGSF21, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.16340933582862 69 0.0638703363354039 0.620397627792234 5032 0.430095360332777 2 2 0 -6.75096584475763 LTS-030 NA NA NA NA LTS-030 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.248 1 NA NA NA NA NA LTS-030 chr1 21749805 21758450 8646 * character(0) 0.300888194554751 7 0.160436903485451 0.412608894642545 114 0.464972105194399 4 3 1 -6.75182632502717 LTS-030 chr1 21758451 21758460 10 * character(0) NA 0 NA 0.591 1 NA NA NA NA NA LTS-030 chr1 21758461 22313590 555130 * c(CELA3B, ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3) 0.174178600482359 37 0.0724720097154218 0.674876828279205 1126 0.33554250708426 2 2 0 -6.78460905238531 LTS-030 chr1 22313591 22315677 2087 * CELA3B NA 0 NA 0.111 1 NA NA NA NA NA LTS-030 chr1 22315678 22329593 13916 * c(CELA3A, CELA3B) 0.180733948286684 3 0.0276827262626594 0.317716592188939 43 0.21248557243707 2 2 0 -6.99367199790349 LTS-030 chr1 22329594 22332033 2440 * c(CELA3A, CELA3B) NA 0 NA 0.55 1 NA NA NA NA NA LTS-030 chr1 22332034 24198960 1866927 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, CELA3A, HNRNPR, LYPLA2, ZNF436-AS1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, LINC00339, HMGCL, HTR1D, ID3, WNT4, ASAP3, PITHD1, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, ZBTB40, CDC42) 0.192691713828318 60 0.0708269535179424 0.607166180142579 2337 0.30658821388166 2 2 0 -6.82551304826978 LTS-030 chr1 24198961 24199026 66 * character(0) 0.186 1 NA 0.226 1 NA NA NA NA NA LTS-030 chr1 24199027 24289987 90961 * c(MIR378F, CNR2, PNRC2) 0.207025272434564 22 0.051887824394036 0.413954762817838 143 0.20329576854069 1 1 0 -7.08987683708911 LTS-030 chr1 24289988 24291285 1298 * character(0) NA 0 NA 0.805 1 NA NA NA NA NA LTS-030 chr1 24291286 26691174 2399889 * c(MIR3917, RCAN3AS, SRRM1, CNKSR1, CD52, RCAN3, MYOM3, PDIK1L, IFNLR1, PAQR7, EXTL1, TMEM50A, ZNF683, CLIC4, SYF2, LDLRAP1, LOC284632, CATSPER4, STMN1, NCMAP, PAFAH2, ZNF593, AIM1L, TMEM57, MTFR1L, RSRP1, MAN1C1, NIPAL3, SELENON, GRHL3, IL22RA1, RHCE, RHD, LOC646471, CEP85, SLC30A2, AUNIP, FAM110D, SH3BGRL3, TRIM63, RUNX3, STPG1, UBXN11) 0.176628856089083 73 0.0574864718385504 0.627699285765545 3532 0.34118489054985 2 2 0 -6.78473363516341 LTS-030 chr1 26691175 26694245 3071 * ZNF683 0.205 1 NA 0.633134297766614 17 0.317095005711315 2 2 0 -5.76446707375019 LTS-030 chr1 26694246 29190138 2495893 * c(MIR1976, WASF2, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, FAM76A, EYA3, FGR, DNAJC8, WDTC1, STX12, IFI6, ZNF683, RNU11, AHDC1, SMPDL3B, SFN, GPR3, HMGN2, TRNP1, CD164L2, OPRD1, YTHDF2, GPN2, MED18, TRNAU1AP, PPP1R8, XKR8, PIGV, PTAFR, RPA2, RPS6KA1, GPATCH3, ACTG1P20, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, LIN28A, DHDDS, ARID1A, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, NA NA NA NA NA NA NA NA NA LTS-030 SYTL1, SNHG12, FCN3, MAP3K6, ATPIF1, THEMIS2) 0.152771691314388 38 0.0665754526545582 0.644977178071581 3882 0.318900715787223 2 2 0 -6.83345565490716 LTS-030 NA NA NA NA LTS-030 chr1 29190139 29320087 129949 * c(EPB41, OPRD1) NA 0 NA 0.730204548491523 25 0.143871956961737 3 NA NA -5.79512914983888 LTS-030 chr1 29320088 29323629 3542 * EPB41 NA 0 NA 2.189 1 NA NA NA NA NA LTS-030 chr1 29323630 29616318 292689 * c(PTPRU, EPB41, TMEM200B, MECR, SRSF4) 0.422 1 NA 1.03004998810571 379 0.614327170841716 4 4 0 -5.76481800842312 LTS-030 chr1 29616319 33283759 3667441 * c(FAM229A, MATN1-AS1, MIR4254, MIR4420, PTPRU, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, FABP3, KPNA6, LINC01226, HCRTR1, HDAC1, MTMR9LP, ZBTB8OS, SERINC2, LCK, MATN1, ZCCHC17, BSDC1, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, KIAA1522, RBBP4, TINAGL1, S100PBP, MARCKSL1, ZBTB8A, SNORD103C, SNORD103A, ZBTB8B, LAPTM5, CCDC28B, NKAIN1, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1, SNRNP40, SDC3, PUM1) 0.451393066071615 79 0.0629694340672089 1.1075087704937 3634 0.515417883763706 4 2 2 -6.84269237681294 LTS-030 chr1 33283760 33291636 7877 * S100PBP NA 0 NA 0.575 1 NA NA NA NA NA LTS-030 chr1 33291637 36521514 3229878 * c(MIR3605, TMEM35B, SMIM12, AZIN2, TMEM54, CSMD2, GJB4, HMGB4, RNF19B, A3GALT2, C1orf216, ZNF362, PHC2, AGO3, AGO4, AK2, NCDN, FNDC5, AGO1, GJA4, GJB3, GJB5, HPCA, TFAP2E, CSMD2-AS1, TRIM62, PSMB2, DLGAP3, CLSPN, SFPQ, S100PBP, LOC653160, ZSCAN20, ZMYM1, KIAA0319L, C1orf94, ZMYM4, ZMYM6) 0.417838401023964 41 0.0677118806450375 0.969670951884187 3589 0.48753014028768 4 2 2 -6.79684706135285 LTS-030 chr1 36521515 36941254 419740 * c(OSCP1, COL8A2, CSF3R, AGO3, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, MRPS15, SH3D21, STK40, LSM10, THRAP3) 0.44893284392235 17 0.0459647403227863 1.13221524634468 964 0.463325198960435 4 2 2 -6.78100692150402 LTS-030 chr1 36941255 36945023 3769 * CSF3R NA 0 NA 0.41 1 NA NA NA NA NA LTS-030 chr1 36945024 37267191 322168 * c(CSF3R, GRIK3) 0.418793121214964 4 0.0765680525197466 0.620807359964829 136 0.227414370271758 2 1 1 -6.77793444104039 LTS-030 chr1 37267192 46597497 9330306 * c(LOC100129924, NFYC-AS1, KDM4A-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, MIR5584, ZMPSTE24, AKR1A1, TESK2, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, TMCO2, ZNF684, C1orf122, KLF17, TMEM125, COL9A2, MANEAL, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, MAST2, SZT2, MACF1, MMACHC, MYCBP, HEYL, NA NA NA NA NA NA NA NA NA LTS-030 BEST4, SNORD55, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, C1orf228, ZFP69, TCTEX1D4, BMP8A, INPP5B, IPP, SVBP, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, YBX1, PRDX1, ZNF691, UTP11, TMEM69, HPCAL4, ATP6V0B, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, RNF220, PPT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, RLF, GPBP1L1, RPS8, OXCT2, RRAGC, P3H1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 KIAA0754, SMAP2, MEAF6, EXO5, ELOVL1, ST3GAL3, SLC2A1, ZFP69B, SLC6A9, BMP8B, SNORA55, TIE1, LINC01137, PPIEL, CCDC30, RPS15AP10, UROD, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, YRDC, PPCS, SNIP1, ZC3H12A, HYI, ZMYND12, NT5C1A, HPDL, MFSD2A, PIK3R3, PTCH2, B4GALT2, PABPC4, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, CDC20) 0.433004228964471 207 0.0776825775356782 1.00458261410482 11658 0.497294261579427 4 2 2 -6.73665826674196 LTS-030 NA NA NA NA LTS-030 chr1 46597498 47284447 686950 * c(EFCAB14-AS1, MKNK1-AS1, TSPAN1, LRRC41, DMBX1, KNCN, MOB3C, CYP4B1, FAAH, TEX38, NSUN4, LURAP1, POMGNT1, ATPAF1, FAAHP1, UQCRH, RAD54L, PIK3R3, MKNK1, EFCAB14) 0.454788762193353 21 0.0381718545028988 1.14651560337924 1309 0.655382755349544 4 2 2 -6.85643396884103 LTS-030 chr1 47284448 47284563 116 * CYP4B1 NA 0 NA 0.661 1 NA NA NA NA NA LTS-030 chr1 47284564 47614724 330161 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) 0.425864332880691 15 0.070777787745134 0.718587411099901 346 0.380859606824589 2 1 1 -6.79758583797305 LTS-030 chr1 47614725 47615016 292 * character(0) NA 0 NA 1.381 1 NA NA NA NA NA LTS-030 chr1 47615017 53453861 5838845 * c(MIR761, LINC00853, PDZK1IP1, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, RNF11, C1orf185, GPX7, FAM159A, TRABD2B, SKINT1L, ZYG11A, NRDC, ORC1, TXNDC12, CMPK1, SPATA6, ECHDC2, RAB3B, SCP2, DMRTA2, STIL, COA7, TAL1, BEND5, ZYG11B, FOXD2-AS1, AGBL4, PRPF38A, BTF3L4, ZFYVE9) 0.420023028418408 34 0.112614861150168 0.981341200961945 4033 0.487574215899292 4 2 2 -6.75460446990267 LTS-030 chr1 53453862 53457498 3637 * SCP2 NA 0 NA 0.574 1 NA NA NA NA NA LTS-030 chr1 53457499 53459590 2092 * SCP2 0.424147726278881 2 0.0742462120245874 0.350727256105585 49 0.156155747082644 2 1 1 -6.77048649417911 LTS-030 chr1 53459591 53459613 23 * SCP2 NA 0 NA 0.681 1 NA NA NA NA NA LTS-030 chr1 53459614 65692576 12232963 * c(LINC01135, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, AK4, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, ALG6, FAM151A, JAK1, JUN, MROH7, LDLRAD1, MIR101-1, TACSTD2, MAGOH, MGC34796, NFIA, NA NA NA NA NA NA NA NA NA LTS-030 ROR1, MRPL37, HOOK1, HSPB11, PGM1, YIPF1, L1TD1, C1orf123, TTC22, RAVER2, FGGY, PRKAA2, NDC1, CACHD1, CYB5RL, SCP2, DMRTB1, SLC1A7, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, PLPP3, TMEM59) 0.439385273148739 168 0.0625180552762875 1.04262386518635 6911 0.524789041912716 4 2 2 -6.77919267734541 LTS-030 NA NA NA NA LTS-030 chr1 65692577 70904487 5211911 * c(INSL5, GNG12-AS1, MIR1262, MIR3117, HHLA3, CTH, IL23R, GADD45A, TCTEX1D1, AK4, SLC35D1, SERBP1, IL12RB2, LEPR, C1orf141, PDE4B, PIN1P1, LEPROT, LRRC40, DEPDC1, GNG12, LRRC7, MIER1, RPE65, WDR78, WLS, ANKRD13C, SGIP1, DIRAS3, SRSF11, DNAJC6) 0.43521104074432 32 0.0478235057436498 0.894333803650821 3179 0.494719672445629 4 2 2 -6.89137283631021 LTS-030 chr1 70904488 70904722 235 * CTH NA 0 NA 0.587 1 NA NA NA NA NA LTS-030 chr1 70904723 75685581 4780859 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, SLC44A5, NEGR1, MIR186, LHX8, TNNI3K, PTGER3, FPGT, ZRANB2) 0.448517235809235 17 0.0485745333906323 0.750981748640388 1508 0.40868134413168 2 1 1 -7.52995516789488 LTS-030 chr1 75685582 75687981 2400 * SLC44A5 NA 0 NA 0.868 1 NA NA NA NA NA LTS-030 chr1 75687982 94344786 18656805 * c(MIR760, LOC100129046, CCDC18-AS1, PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GLMN, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, GBP6, HFM1, DR1, SLC44A5, CLCA4, MTF2, USP33, ADGRL2, KIAA1107, LRRC8B, LPAR3, DDAH1, EPHX4, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GBP1, GBP2, GBP3, GFI1, SNORA66, SNORD45B, SNORD45A, GNG5, ZNF326, BTBD8, GTF2B, DNTTIP2, LINC01140, NA NA NA NA NA NA NA NA NA LTS-030 ACADM, CCDC18, BARHL2, CYR61, MIGA1, GBP7, C1orf146, FAM69A, UOX, GBP1P1, FLJ27354, LINC01555, MSH4, GEMIN8P4, RBMXL1, TMED5, SH3GLB1, ZNHIT6, GIPC2, FNBP1L, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, RABGGTB, SNORD21, RPL5, ADGRL4, LOC646626, BRDT, SNORD45C, TGFBR3, LOC729930, EVI5, TTLL7, RPAP2, RPF1, ST6GALNAC5, CDC7, BCAR3, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, BCL10, NEXN, SELENOF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 CLCA3P, CLCA2, HS2ST1) 0.432713567367681 138 0.0854006360917449 0.934522969924031 9079 0.506583647959449 4 2 2 -6.92956626276868 LTS-030 NA NA NA NA LTS-030 chr1 94344787 95448445 1103659 * c(CNN3, SLC44A3, ALG14, F3, ABCA4, GCLM, ABCD3, LOC729970, ARHGAP29) 0.426551062595042 19 0.0678571771534012 1.085209347405 950 0.578646883940595 4 2 2 -6.76520524821323 LTS-030 chr1 95448446 109154920 13706475 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, NA NA NA NA NA NA NA NA NA LTS-030 PLPPR4) 0.411405890190829 42 0.0913297588676329 0.870830194155376 3553 0.432558150375513 3 2 1 -7.14071700432596 LTS-030 NA NA NA NA LTS-030 chr1 109154921 109158865 3945 * FAM102B NA 0 NA 2.226 1 NA NA NA NA NA LTS-030 chr1 109158866 110199459 1040594 * c(HENMT1, ATXN7L2, C1orf194, FNDC7, CELSR2, WDR47, CLCC1, AKNAD1, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM2, GSTM4, GPSM2, MYBPHL, MIR197, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, SCARNA2, STXBP3, TAF13, GPR61, PSRC1) 0.443360880950744 19 0.0492652446201719 1.02718645895683 2646 0.567017947990682 4 2 2 -6.73993313542043 LTS-030 chr1 110199460 110281055 81596 * c(GSTM1, GSTM2, GSTM3, GSTM4, GSTM5) 0.405 1 NA 0.730678143722601 306 0.363503735162843 3 3 0 -5.76740241315197 LTS-030 chr1 110281056 110281941 886 * GSTM3 NA 0 NA 1.04 1 NA NA NA NA NA LTS-030 chr1 110281942 110950633 668692 * c(LAMTOR5-AS1, LAMTOR5, AHCYL1, CSF1, UBL4B, ALX3, GSTM3, KCNC4, SLC6A17, LOC440600, RBM15, EPS8L3, STRIP1, SLC16A4) 0.453096955029986 13 0.0432731337271072 0.993248737612549 982 0.465852046417565 4 2 2 -6.79935399631417 LTS-030 chr1 110950634 110993782 43149 * LAMTOR5-AS1 NA 0 NA 0.47 1 NA NA NA NA NA LTS-030 chr1 110993783 111690641 696859 * c(CEPT1, DRAM2, KCNA2, KCNA3, KCNA10, LRIF1, CYMP, PROK1, CD53) 0.458119097381721 6 0.0508238789022116 0.670034257722647 433 0.314642970647441 2 1 1 -6.87278896571229 LTS-030 chr1 111690642 111701963 11322 * CEPT1 NA 0 NA 1.133 1 NA NA NA NA NA LTS-030 chr1 111701964 111772602 70639 * c(CEPT1, CHI3L2, DENND2D) 0.404 1 NA 1.17669620908725 138 0.576158529959403 5 5 0 -5.76446176618973 LTS-030 chr1 111772603 111773371 769 * CHI3L2 NA 0 NA 0.291 1 NA NA NA NA NA LTS-030 chr1 111773372 112315400 542029 * c(LINC01160, FAM212B-AS1, CHI3L2, DDX20, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, PGCP1, OVGP1, ATP5F1, FAM212B, RAP1A, WDR77) 0.422492725503928 43 0.0652878370075895 0.826875113903813 926 0.408710438974658 4 2 2 -6.83905034940656 LTS-030 chr1 112315401 118170988 5855588 * c(MIR942, AP4B1-AS1, MIR320B1, MIR4256, TSPAN2, BCAS2, AP4B1, PHTF1, MAN1A2, MAB21L3, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, FAM19A3, IGSF3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, ATP1A1, NGF, NHLH2, NRAS, TRIM33, RSBN1, FAM46C, ST7L, SLC22A15, CTTNBP2NL, OLFML3, PTGFRN, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, VTCN1, SIKE1, TRIM45, VANGL1, CAPZA1, CASQ2, TTF2, NA NA NA NA NA NA NA NA NA LTS-030 ATP1A1-AS1, CD2, CD101, CD58, LRIG2) 0.397427666431797 62 0.0843860522659286 0.989173936659938 5362 0.52357790893315 4 2 2 -6.87434177482417 LTS-030 NA NA NA NA LTS-030 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.509 1 NA NA NA NA NA LTS-030 chr1 118319311 118320996 1686 * character(0) 0.476 1 NA 0.369480379716796 39 0.199338616280491 1 1 0 -5.76455273631841 LTS-030 chr1 118320997 118321065 69 * character(0) NA 0 NA 0.632 1 NA NA NA NA NA LTS-030 chr1 118321066 120460418 2139353 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.440706784692706 35 0.039334270985358 0.813431043305344 1404 0.312238328455335 4 2 2 -7.24931589829552 LTS-030 chr1 120460419 120461060 642 * NOTCH2 NA 0 NA 1.26 1 NA NA NA NA NA LTS-030 chr1 120461061 120535467 74407 * NOTCH2 NA 0 NA 1.09432527377688 188 0.326150279614289 4 NA NA -5.76781808053718 LTS-030 chr1 120535468 120538086 2619 * NOTCH2 NA 0 NA 0.493024089482745 109 0.945788269952647 2 NA NA -5.76447647883819 LTS-030 chr1 120538087 121298335 760249 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) 0.294266956781427 12 0.0731468013344025 0.94922217686433 148 0.707087807582564 4 3 1 -6.73842921816976 LTS-030 chr1 121298336 121313547 15212 * EMBP1 NA 0 NA 0.601922972132397 47 0.20155891750253 2 NA NA -5.76441620409538 LTS-030 chr1 143912360 144013853 101494 * FAM72D 0.317 1 NA 0.858606680170255 5 0.489942139440975 3 3 0 -5.76570487917542 LTS-030 chr1 144013854 145136562 1122709 * c(NBPF20, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.327546011060217 76 0.0893088392709805 1.0587051443779 629 0.519245602500961 4 3 1 -6.80026841764482 LTS-030 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.06 1 NA NA NA NA NA LTS-030 chr1 145136925 145139103 2179 * NBPF20 NA 0 NA 0.499878964079318 60 0.347095541968256 2 NA NA -5.76476377006856 LTS-030 chr1 145139104 145282020 142917 * c(NBPF10, NBPF20, NOTCH2NL) 0.3 1 NA 1.19378290667061 56 0.832725501419457 5 5 0 -5.76441414285276 LTS-030 chr1 145282021 145290585 8565 * c(NBPF10, NBPF20, NOTCH2NL) 0.319331702695005 11 0.0940319094775811 0.582578161854499 172 0.716106140043478 7 5 2 -6.74682350034239 LTS-030 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 1.852 1 NA NA NA NA NA LTS-030 chr1 145414668 145706869 292202 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, POLR3GL, ITGA10, PEX11B, RBM8A) 0.337101096828584 3 0.0206639783197718 1.42072531055681 1194 0.651840401468655 12 8 4 -6.98191587019185 LTS-030 chr1 145706870 145746977 40108 * c(NBPF10, NBPF20, CD160, PDZK1) NA 0 NA 0.819 1 NA NA NA NA NA LTS-030 chr1 145746978 146514442 767465 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.305327417063997 8 0.0662155570844194 0.810818276149611 143 0.446483011085996 4 3 1 -6.83778284075379 LTS-030 chr1 146514443 146514458 16 * c(NA, NA, NA, LOC728989) NA 0 NA 1.595 1 NA NA NA NA NA LTS-030 chr1 146514459 147400953 886495 * c(LINC00624, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.361525913975269 12 0.0586708202730723 1.34105416743867 697 0.577721987803855 6 4 2 -6.74082026099925 LTS-030 chr1 147400954 147408709 7756 * c(GPR89B, NA, NA, NA) NA 0 NA 0.894 1 NA NA NA NA NA LTS-030 chr1 147408710 149764662 2355953 * c(FCGR1CP, MIR5087, FCGR1A, NBPF14, NBPF15, LINC01138, LOC388692, HIST2H2BF, GPR89B, LINC00869, PPIAL4D, LOC645166, NA, NA, NA, NA, PPIAL4F, PPIAL4E) NA 0 NA 0.824397934046892 162 0.574386006754839 3 NA NA -5.7684693935967 LTS-030 chr1 149764663 150531293 766631 * c(MIR4257, FALEC, SF3B4, MTMR11, VPS45, CIART, ECM1, RPRD2, CA14, HIST2H2AB, HIST2H2BC, HIST2H2BF, BOLA1, APH1A, PLEKHO1, MRPS21, ADAMTSL4, OTUD7B, HIST2H3D, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PRPF3, SV2A) 0.344286003711218 5 0.0673223588416211 1.55706568850142 1662 0.818320324116399 6 4 2 -6.75976401136937 LTS-030 chr1 150531294 150531437 144 * ADAMTSL4 NA 0 NA 3.085 1 NA NA NA NA NA LTS-030 chr1 150531438 150596440 65003 * c(ENSA, MCL1, ADAMTSL4) NA 0 NA 2.14676898173734 180 0.891787613840805 10 NA NA -5.76444360593444 LTS-030 chr1 150596441 152009532 1413092 * c(LOC100132111, C2CD4D, TNFAIP8L2-SCNM1, SEMA6C, MLLT11, TDRKH, CELF3, THEM4, GABPB2, BNIPL, CTSK, CTSS, ENSA, POGZ, RIIAD1, THEM5, TMOD4, CERS2, LINGO4, LYSMD1, ARNT, OAZ3, PI4KB, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, SNX27, PIP5K1A, HORMAD1, ANXA9, SELENBP1, SETDB1) 0.360169534240031 36 0.0436883897257085 1.46663756639748 3627 0.79034414841665 6 4 2 -6.74051736571433 LTS-030 chr1 152009533 152056513 46981 * character(0) NA 0 NA 0.927 1 NA NA NA NA NA LTS-030 chr1 152056514 152322880 266367 * c(TCHHL1, RPTN, FLG, HRNR, FLG2, TCHH) 0.364406675395257 10 0.0901224475674932 0.94943702219726 531 0.324695355593188 3 2 1 -6.78358408578102 LTS-030 chr1 152322881 152328976 6096 * FLG2 NA 0 NA 0.511940782330454 114 0.197134917630305 2 NA NA -5.76672057296747 LTS-030 chr1 152328977 153507281 1178305 * c(C1orf68, PGLYRP3, LELP1, SPRR4, LCE4A, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.347866803605041 21 0.0899630347367607 0.956010558774755 1012 0.587894760199903 3 2 1 -6.84593267533341 LTS-030 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.754 1 NA NA NA NA NA LTS-030 chr1 153507608 155059848 1552241 * c(MIR190B, MIR4258, LOC100505666, ADAR, HAX1, PMVK, JTB, SLC27A3, CHRNB2, CKS1B, TDRD10, SHE, DCST2, S100A16, CREB3L4, DCST1, EFNA3, EFNA4, CRTC2, SNAPIN, C1orf43, CHTOP, SLC39A1, IL6R, ILF2, KCNN3, C1orf189, NPR1, ZBTB7B, UBE2Q1, LENEP, ATP8B2, PBXIP1, S100A14, GATAD2B, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, SHC1, INTS3, TPM3, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, NA NA NA NA NA NA NA NA NA LTS-030 UBAP2L, DENND4B) 0.356603794692514 47 0.0509328883132833 1.56043930025945 4237 0.756108971637332 6 4 2 -6.75186466500068 LTS-030 NA NA NA NA LTS-030 chr1 155059849 155179113 119265 * c(EFNA1, EFNA3, KRTCAP2, MTX1, MUC1, DPM3, SLC50A1, MIR92B, THBS3, TRIM46) NA 0 NA 1.93187909706651 469 0.821207108231596 9 NA NA -5.76454879736194 LTS-030 chr1 155179114 155180073 960 * MTX1 NA 0 NA 1.488 1 NA NA NA NA NA LTS-030 chr1 155180074 155583272 403199 * c(SCAMP3, FAM189B, CLK2, FDPS, RUSC1, GBA, GBAP1, RUSC1-AS1, MTX1, PKLR, MSTO1, ASH1L, HCN3, ASH1L-AS1, POU5F1P4, MIR555) 0.263 1 NA 1.42608620471841 1142 0.735600200725003 6 6 0 -5.76454872100243 LTS-030 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.902 1 NA NA NA NA NA LTS-030 chr1 155583288 155642498 59211 * c(MSTO1, YY1AP1) NA 0 NA 0.78599769890807 116 0.398817670443363 3 NA NA -5.76447399522879 LTS-030 chr1 155642499 155708463 65965 * c(YY1AP1, DAP3) NA 0 NA 1.5276793047922 127 1.12683658466476 7 NA NA -5.76448009426749 LTS-030 chr1 155708464 155716482 8019 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 0.355 1 NA NA NA NA NA LTS-030 chr1 155716483 155722401 5919 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.687131412360378 89 0.506538296642288 2 NA NA -5.76467212245509 LTS-030 chr1 155722402 155722940 539 * c(GON4L, YY1AP1) NA 0 NA 1.131 1 NA NA NA NA NA LTS-030 chr1 155722941 155884075 161135 * c(KIAA0907, SYT11, GON4L, YY1AP1, RIT1) 0.385 1 NA 1.31320610635435 414 0.520198971371086 6 6 0 -5.76591254176305 LTS-030 chr1 155884076 155884194 119 * KIAA0907 NA 0 NA 2.588 1 NA NA NA NA NA LTS-030 chr1 155884195 155990838 106644 * c(KIAA0907, RXFP4, SSR2, SCARNA4, SNORA80E, ARHGEF2) NA 0 NA 1.71175455700578 353 0.847525199194324 8 NA NA -5.76464728260388 LTS-030 chr1 155990839 156005053 14215 * character(0) NA 0 NA 0.984 1 NA NA NA NA NA LTS-030 chr1 156005054 156006772 1719 * UBQLN4 NA 0 NA 0.673777038663984 41 0.239692699604937 2 NA NA -5.76465980801704 LTS-030 chr1 156006773 156006782 10 * UBQLN4 NA 0 NA 1.3 1 NA NA NA NA NA LTS-030 chr1 156006783 156206196 199414 * c(PMF1-BGLAP, PMF1, LAMTOR2, LMNA, UBQLN4, RAB25, SEMA4A, MEX3A, SLC25A44) 0.317956531473878 3 0.0540030863315545 1.82519407390978 473 0.796182773362997 10 7 3 -6.73972440554766 LTS-030 chr1 156206197 157094501 888305 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, SMG5, HDGF, INSRR, PEAR1, VHLL, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GPATCH4, PRCC, RHBG, HAPLN2, BGLAP, BCAN, CCT3, MIR765, MRPL24, PAQR6, ISG20L2, TMEM79, SH2D2A, ARHGEF11) 0.345747478332317 63 0.0541766940972567 1.42856126532893 2732 0.65529873004876 6 4 2 -6.75624620593779 LTS-030 chr1 157094502 157094544 43 * ETV3 NA 0 NA 1.13 1 NA NA NA NA NA LTS-030 chr1 157094545 158262729 1168185 * c(FCRL1, FCRL3, ETV3, CYCSP52, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1C, CD1D, CD5L) 0.364373798750176 16 0.0539060911833409 1.23277593309433 1117 0.609196696146546 6 4 2 -6.77721442069155 LTS-030 chr1 158262730 158262940 211 * CD1C NA 0 NA 0.747 1 NA NA NA NA NA LTS-030 chr1 158262941 159684402 1421462 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, APCS, IFI16, OR10R2, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, CADM3, SPTA1, OR6N2, OR6K2, CD1B, CD1C, CD1E, AIM2) 0.357776918314148 52 0.0773383489037708 0.955021725527757 1439 0.572593358652851 3 2 1 -6.83876421900691 LTS-030 chr1 159684403 159750789 66387 * DUSP23 NA 0 NA 1.594 1 NA NA NA NA NA LTS-030 chr1 159750790 160516584 765795 * c(LINC01133, SLAMF6, COPA, NCSTN, CFAP45, C1orf204, FCRL6, KCNJ9, KCNJ10, VSIG8, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, DUSP23, SLAMF8, VANGL2, IGSF9, PEX19, TAGLN2, CASQ1, PEA15, CD84, SLAMF9, PIGM, IGSF8) 0.361961474498915 34 0.0474980063377465 1.44692765509089 2253 1.29874581273005 6 4 2 -6.74177063608406 LTS-030 chr1 160516585 160516588 4 * CD84 NA 0 NA 0.913 1 NA NA NA NA NA LTS-030 chr1 160516589 160920427 403839 * c(ITLN2, LY9, CD244, ITLN1, SLAMF7, SLAMF1, CD84, CD48) 0.346305524795922 17 0.110487123284864 1.1072892875828 554 0.569788832139375 6 4 2 -6.77903073048834 LTS-030 chr1 160920428 160920757 330 * ITLN2 NA 0 NA 1.421 1 NA NA NA NA NA LTS-030 chr1 160920758 161335377 414620 * c(TSTD1, MIR5187, KLHDC9, ITLN2, FCER1G, ARHGAP30, CFAP126, USP21, APOA2, MPZ, NDUFS2, NIT1, F11R, UFC1, PFDN2, PPOX, SDHC, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.347762198226858 33 0.101724207511975 1.60221441659943 1436 0.899681069089785 6 4 2 -6.74278909821625 LTS-030 chr1 161335378 161561051 225674 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, FCGR2C) 0.344897305551183 15 0.0750036824492797 0.848325883579755 243 0.379894184077812 3 2 1 -6.82205671738311 LTS-030 chr1 161561052 161571035 9984 * FCGR2C 0.3039145375937 3 0.198437227690102 0.393019171243366 76 0.433492649323543 4 3 1 -6.76101601455003 LTS-030 chr1 161571036 161575983 4948 * HSPA7 NA 0 NA 1.786 1 NA NA NA NA NA LTS-030 chr1 161575984 161647727 71744 * c(FCGR2B, FCGR3B, HSPA7) 0.495 1 NA 0.869082635543785 151 0.762135762531717 3 3 0 -5.76492772265664 LTS-030 chr1 161647728 163113566 1465839 * c(MIR4654, DUSP12, SH2D1B, UHMK1, FCRLB, FCGR2B, ATF6, OLFML2B, C1orf111, CCDC190, C1orf226, DDR2, HSD17B7, RGS4, RPL31P11, UAP1, MIR556, FCRLA, RGS5, NOS1AP) 0.348968037924108 50 0.083686794608449 1.25915615264609 1534 0.581694054350212 6 4 2 -6.76720275471952 LTS-030 chr1 163113567 163114605 1039 * RGS5 0.483 1 NA 1.67355585517138 23 0.238575490824465 7 7 0 -5.76443114999889 LTS-030 chr1 163114606 164789338 1674733 * c(LOC100505795, PBX1, NUF2, RGS5) NA 0 NA 1.26201915062837 206 0.568948520801976 5 NA NA -5.77212738379494 LTS-030 chr1 164789339 169364148 4574810 * c(MIR921, MIR3658, LOC100505918, GPA33, FMO9P, TADA1, FAM78B, DPT, ALDH9A1, GPR161, MPC2, TIPRL, NME7, SFT2D2, ILDR2, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, PBX1, TMCO1, POU2F1, ADCY10, DCAF6, POGK, CCDC181, RXRG, XCL1, XCL2, MIR557, UCK2, LINC00626, ANKRD36BP1, MAEL, BLZF1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1) 0.44035952836491 42 0.0835890478463574 0.97550827020462 2864 0.58350610826429 4 2 2 -6.73823678400404 LTS-030 chr1 169364149 171482237 2118089 * c(MIR1295A, MIR3119-1, MIR3119-2, MIR1295B, SLC19A2, METTL11B, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, LINC01142, FMO6P, PRRX1, C1orf112, SCYL3, CCDC181, SELE, SELL, SELP, TOP1P1, MROH9, BLZF1, METTL18, GORAB) 0.415764168014292 39 0.0870250634783699 0.807748126164538 1688 0.40566395280082 3 2 1 -6.8724603289524 LTS-030 chr1 171482238 171482305 68 * PRRC2C NA 0 NA 1.02 1 NA NA NA NA NA LTS-030 chr1 171482306 182922113 11439808 * c(GM140, RASAL2-AS1, MIR3120, MIR3121, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, DNM3OS, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, RC3H1, TDRD5, TOR1AIP2, DHX9, FLJ23867, PRRC2C, DNM3, TOR1AIP1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, ABL2, CACYBP, KLHL20, GLUL, SLC9C2, LOC284648, MR1, ANKRD45, RGSL1, FASLG, LINC00272, C1orf220, ASTN1, SERPINC1, MYOC, IER5, SUCO, METTL13, PIGC, RALGPS2, DARS2, MIR488, NA NA NA NA NA NA NA NA NA LTS-030 QSOX1, KIAA1614, BRINP2, RGS16, RNASEL, GAS5, PAPPA2, SNORD74, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730102, LOC730159, CACNA1E, NPHS2, NPL, SHCBP1L, TEX35, ACBD6, ZBTB37, RGS8, VAMP4, SEC16B, LHX4, TNFSF18, ANGPTL1, CENPL, XPR1, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.44114428887203 139 0.0644720157052023 0.962431474265216 8812 0.54568176810948 4 2 2 -6.76754647402876 LTS-030 NA NA NA NA LTS-030 chr1 182922114 183441893 519780 * c(NMNAT2, SMG7-AS1, LAMC1, LAMC2, SHCBP1L, SMG7) 0.438483507786345 12 0.0378185460355422 1.28533831236403 583 0.525674829484723 6 3 3 -6.74143454610708 LTS-030 chr1 183441894 183471334 29441 * SMG7 NA 0 NA 0.745 1 NA NA NA NA NA LTS-030 chr1 183471335 196712731 13241397 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, CFH, BRINP3, KCNT2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2, SMG7) 0.438886888548443 39 0.0502112272448155 0.908394484979902 4142 0.427333761200271 4 2 2 -7.10993835658414 LTS-030 chr1 196712732 196857426 144695 * c(CFHR4, CFHR3, CFH, CFHR1) NA 0 NA 0.462265342602728 133 0.269954865724562 1 NA NA -5.79080402799325 LTS-030 chr1 196857427 196871534 14108 * CFHR4 NA 0 NA 0.994 1 NA NA NA NA NA LTS-030 chr1 196871535 200338010 3466476 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.435322360469799 24 0.0803140574624826 0.794321395082625 1835 0.416142435096313 3 2 1 -7.07000785633143 LTS-030 chr1 200338011 200342086 4076 * LINC00862 NA 0 NA 0.975 1 NA NA NA NA NA LTS-030 chr1 200342087 201198109 856023 * c(KIF21B, CAMSAP2, ZNF281, TMEM9, GPR25, LINC00862, C1orf106, ASCL5, CACNA1S, DDX59, IGFN1, KIF14) 0.420275737461281 24 0.101786639238832 1.00436926924189 1505 0.507426371930605 4 2 2 -6.75253316639879 LTS-030 chr1 201198110 201252578 54469 * character(0) NA 0 NA 2.379 1 NA NA NA NA NA LTS-030 chr1 201252579 204586624 3334046 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, FMOD, PHLDA3, LMOD1, OPTC, LINC00303, UBE2T, RPS10P7, KISS1, LAD1, NA, MDM4, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PIK3C2B, PKP1, LAX1, ETNK2, PRELP, IPO9, PTPN7, RABIF, KLHL12, LGR6, REN, RNPEP, MGAT4EP, SNRPE, SNORA77, TNNI1, NA NA NA NA NA NA NA NA NA LTS-030 TNNT2, LINC01136, BTG2, LINC00260, PPP1R15B, PPFIA4, NAV1, TMEM183A, GPR37L1, SOX13, ZC3H11A) 0.433396752863259 112 0.0830449277350671 1.15478655404574 5467 0.5937496328307 5 3 2 -6.78549494922311 LTS-030 NA NA NA NA LTS-030 chr1 204586625 207201053 2614429 * c(LRRN2, IL24, SLC26A9, MFSD4A, PM20D1, CTSE, EIF2D, ELK4, NFASC, SRGAP2, SLC41A1, DSTYK, LEMD1-AS1, LOC284578, LOC284581, IL19, IL10, TMEM81, MDM4, C1orf186, MIR135B, IL20, CDK18, PIGR, KLHDC8A, AVPR1B, RBBP5, NUCKS1, SRGAP2C, CNTN2, FAM72A, C1orf116, NUAK2, RASSF5, FCAMR, DYRK3, SLC45A3, RAB29, FCMR, MAPKAPK2, LEMD1, IKBKE, TMCC2) 0.440830141185514 65 0.0695964086440805 1.05702352037703 3840 0.465115348759799 4 2 2 -6.75584254943717 LTS-030 chr1 207201054 207217175 16122 * c(PFKFB2, C1orf116) NA 0 NA 0.407 1 NA NA NA NA NA LTS-030 chr1 207217176 207220925 3750 * c(PFKFB2, YOD1) 0.18145390523584 4 0.046475800154489 0.484070921599258 80 0.226261010641933 7 6 1 -6.80364483287632 LTS-030 chr1 207220926 207912286 691361 * c(CR1, CR1L, CR2, CD55, PFKFB2, YOD1, C4BPA, C4BPB) 0.388750211297887 13 0.0759036163457248 0.795964710278202 850 0.380516012238479 3 2 1 -6.75736240493382 LTS-030 chr1 207912287 207925383 13097 * CD46 NA 0 NA 1.335 1 NA NA NA NA NA LTS-030 chr1 207925384 209806186 1880803 * c(MIR4260, LOC148696, LAMB3, MIR205, MIR29C, CD46, PLXNA2, CAMK1G, MIR205HG, CD34) 0.452897126965825 16 0.048222358230735 1.15200162296301 735 0.459058423459319 4 2 2 -6.8903783020284 LTS-030 chr1 209806187 209806308 122 * LAMB3 NA 0 NA 0.767 1 NA NA NA NA NA LTS-030 chr1 209806309 215824076 6017768 * c(MIR3122, LINC00538, CENPF, TATDN3, C1orf74, SPATA45, FAM71A, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, KCNK2, LAMB3, ATF3, NEK2, G0S2, KCTD3, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, USH2A, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, LPGAT1) 0.43095268363818 96 0.0700100619334808 0.946918375733528 3833 0.637016052712117 4 2 2 -6.76660733248656 LTS-030 chr1 215824077 217671736 1847660 * c(ESRRG, GPATCH2, USH2A) 0.422141167535805 12 0.0971628982064594 0.765629379551883 697 0.328644208050414 3 2 1 -6.8991071151665 LTS-030 chr1 217671737 217671740 4 * GPATCH2 NA 0 NA 1.205 1 NA NA NA NA NA LTS-030 chr1 217671741 219706428 2034688 * c(LINC00210, LYPLAL1, SPATA17, RRP15, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.474186672389895 3 0.0220302821891444 1.1183054103652 515 0.600489950323043 4 2 2 -8.0326250391697 LTS-030 chr1 219706429 220089003 382575 * c(RNU5F-1, SLC30A10) NA 0 NA 0.507482173831213 66 0.332777582398994 2 NA NA -5.82063410159454 LTS-030 chr1 220089004 220089102 99 * c(RNU5F-1, SLC30A10) NA 0 NA 0.593 1 NA NA NA NA NA LTS-030 chr1 220089103 225686024 5596922 * c(MIR320B2, MIR4742, BPNT1, DUSP10, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, ENAH, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.443629702872672 34 0.0446347126769914 0.95366485427465 3997 0.47127212540807 4 2 2 -6.77436256816748 LTS-030 chr1 225686025 228698445 3012421 * c(NA, MIR3620, MIR4666A, MIR5008, LEFTY1, SNAP47, MRPL55, HIST3H2BB, PARP1, RNF187, SDE2, IBA57, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, ZNF847P, H3F3AP4, TRIM17, ENAH, PSEN2, COQ8A, GJC2, C1orf145, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, TRIM11, HIST3H3, MIXL1, OBSCN, CDC42BPA, WNT3A, HIST3H2A, TMEM63A) 0.442765733442685 120 0.0434013248645707 1.07780228248846 3872 0.51699988272687 4 2 2 -6.77617097188322 LTS-030 chr1 228698446 234599678 5901233 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR4671, MIR4427, SPHAR, CAPN9, CCSAP, C1orf131, SLC35F3, EXOC8, LOC149373, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, KCNK1, COA6, TRIM67, EGLN1, MAP10, NUP133, DUSP5P1, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TARBP1, TSNAX, TTC13, PGBD5, PCNX2, SPRTN, NTPCR, GNPAT, MLK4, C1orf198, URB2) 0.435387256670325 119 0.0640205355353433 0.949398005133896 4121 0.4313911138946 4 2 2 -6.78544642200837 LTS-030 chr1 234599679 234953934 354256 * c(LINC00184, LINC01354, LINC01132, IRF2BP2, TARBP1) 0.485340400559367 2 0.00919238815542517 1.76954584211729 151 0.800999151391436 8 4 4 -12.1884185311636 LTS-030 chr1 234953935 235272604 318670 * character(0) NA 0 NA 0.537 1 NA NA NA NA NA LTS-030 chr1 235272605 242511570 7238966 * c(LOC100130331, LGALS8-AS1, MIR1537, MIR3123, MIR4753, CHML, LYST, CHRM3, WDR64, EDARADD, B3GALNT2, PLD5, FH, RBM34, OPN3, GNG4, LINC01139, LGALS8, MAP1LC3C, MTR, NID1, ARID4B, HEATR1, ERO1B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, SNORA14B, TBCE, GPR137B, KMO, ACTN2, EXO1, GGPS1, TOMM20) 0.444546594830444 112 0.0688132322995435 0.85495958933044 4324 0.403019816221458 4 2 2 -7.33123508649045 LTS-030 chr1 242511571 243419568 907998 * c(SDCCAG8, PLD5, LINC01347, CEP170) 0.44769633170753 2 0.0240416305603426 0.564437633485084 229 0.285901631098043 2 1 1 -6.84018987972481 LTS-030 chr1 243419569 243433381 13813 * SDCCAG8 NA 0 NA 1.103 1 NA NA NA NA NA LTS-030 chr1 243433382 246022017 2588636 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, ADSS, C1orf100, C1orf101, NA, HNRNPU, LOC339529, DESI2, KIF26B, SMYD3, EFCAB2) 0.4122699987065 19 0.103690187437193 1.00957371338794 1353 0.526943123803978 4 2 2 -6.77209192659065 LTS-030 chr1 246022018 246027066 5049 * SMYD3 NA 0 NA 0.577 1 NA NA NA NA NA LTS-030 chr1 246027067 246707954 680888 * c(LOC255654, TFB2M, SMYD3) 0.175 1 NA 0.500919375194695 89 0.295459802066855 2 2 0 -5.90991111487806 LTS-030 chr1 246707955 247740474 1032520 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, LINC01341, CNST, AHCTF1, C1orf229, OR2W5, SCCPDH, ZNF695, TFB2M, ZNF124, ZNF669, OR2C3, ZNF496, ZNF670) 0.438621524217949 17 0.0499198622499985 0.924388464987583 1307 0.564986269124146 4 2 2 -6.74500283957438 LTS-030 chr1 247740475 248637685 897211 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2T2, OR13G1, OR2L5, OR2G3, OR2G2) 0.421395037900515 51 0.0640997262237584 0.584710580872387 819 0.556253178718045 2 1 1 -6.77712802466722 LTS-030 chr1 248637686 248637715 30 * character(0) NA 0 NA 0.259 1 NA NA NA NA NA LTS-030 chr1 248637716 248737579 99864 * c(OR2T34, OR2T29, OR2G6, OR2T5) 0.466869093737842 3 0.0505206228517952 0.372960225037671 65 0.218621871266701 2 1 1 -7.18337938077855 LTS-030 chr1 248737580 248790545 52966 * c(OR2T34, OR2T10, OR2T11) NA 0 NA 0.0265421251441114 59 0.0499687745863807 0 NA NA -14.4518334601739 LTS-030 chr1 248790546 248801482 10937 * character(0) NA 0 NA 2.554 1 NA NA NA NA NA LTS-030 chr1 248801483 248814060 12578 * c(OR2T27, OR2T35) NA 0 NA 0.137594041539127 48 0.465453837477676 0 NA NA -5.7689701836081 LTS-030 chr1 248814061 249211619 397559 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.467179385412845 11 0.0290735743807453 0.92911589126095 305 0.523502216628887 4 2 2 -7.26646450076553 LTS-030 chr1 249211620 249214131 2512 * PGBD2 NA 0 NA 0.751832556277813 47 0.320317996483831 3 NA NA -5.76446539971148 LTS-030 chr2 38824 38938 115 * FAM110C 0.147 1 NA 0.862138105197874 3 0.100637965003273 3 3 0 -5.7644486849391 LTS-030 chr2 38939 5841519 5802581 * c(LINC01304, RNASEH1-AS1, TMEM18, MYT1L, RNASEH1, SH3YL1, FAM150B, LINC01115, TRAPPC12, ACP1, SNTG2, ADI1, ALLC, RPS7, FAM110C, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11) 0.146503586760349 58 0.0686627365123176 0.614714141053646 1871 0.30766235127701 2 2 0 -6.80155793802009 LTS-030 chr2 6980629 11966317 4985689 * c(SNORA80B, MIR4261, LOC100506274, MIR4429, LINC00570, PDIA6, YWHAQ, CMPK2, MBOAT2, C2orf50, PQLC3, E2F6, CYS1, LPIN1, NTSR2, ATP6V1C2, IAH1, FLJ33534, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, C2orf48, KCNF1, RNF144A-AS1, ODC1, CPSF3, KIDINS220, RRM2, ADAM17, NOL10, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.0841797815296136 45 0.0412710674698512 1.05111523144904 3444 0.543081928932458 4 4 0 -6.83277787931847 LTS-030 chr2 11966318 11967549 1232 * LPIN1 NA 0 NA 1.08649031657011 26 0.322336966542778 4 NA NA -5.76445905005321 LTS-030 chr2 11967550 11977021 9472 * character(0) NA 0 NA 1.474 1 NA NA NA NA NA LTS-030 chr2 11977022 14779829 2802808 * c(MIR3125, MIR4262, LOC100506474, FAM84A, TRIB2) 0.388 1 NA 1.57956128001915 247 0.673952065352434 7 7 0 -5.76513350788539 LTS-030 chr2 14779830 18113508 3333679 * c(MYCNOS, FAM84A, DDX1, MSGN1, GEN1, KCNS3, MYCN, NBAS, RAD51AP2, VSNL1, SMC6, FAM49A) 0.307756133668325 9 0.0675927346523114 1.31676794501442 1126 0.795119546386569 7 5 2 -6.85456857388525 LTS-030 chr2 18113509 19551924 1438416 * c(NT5C1B-RDH14, MIR4757, OSR1, KCNS3, RDH14, NT5C1B) NA 0 NA 1.41439934122526 167 0.732348214705563 6 NA NA -5.76455164149982 LTS-030 chr2 19551925 19552028 104 * OSR1 NA 0 NA 0.694 1 NA NA NA NA NA LTS-030 chr2 19552029 20101229 549201 * c(OSR1, TTC32, LINC00954) 0.2 1 NA 0.670582678166613 47 0.541526327321432 2 2 0 -5.77877868042617 LTS-030 chr2 20101230 20884398 783169 * c(TTC32, GDF7, PUM2, RHOB, MATN3, WDR35, SDC1, HS1BP3, LAPTM4A) 0.171983826414777 27 0.0455959899771274 0.59326926479983 971 0.263253679857648 2 2 0 -6.74756225724272 LTS-030 chr2 20884399 21366191 481793 * c(APOB, LDAH) 0.136514817365999 4 0.0726865416245217 0.37651838419458 595 0.195902134800455 1 1 0 -7.91575198765929 LTS-030 chr2 23729986 26671544 2941559 * c(MIR1301, RAB10, ADCY3, KLHL29, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, HADHA, HADHB, PFN4, FAM228B, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, FAM228A, DNAJC27-AS1, CENPO, WDCP, SELENOI, NCOA1, DRC1, TP53I3) 0.172855401226028 64 0.074851266212212 0.603682212744186 3442 0.320570036522293 2 2 0 -6.74072213074912 LTS-030 chr2 26671545 26697612 26068 * c(DRC1, OTOF) NA 0 NA 0.682713176507579 177 0.230169579045821 2 NA NA -5.76948320135144 LTS-030 chr2 26697613 26698192 580 * OTOF NA 0 NA 0.863 1 NA NA NA NA NA LTS-030 chr2 26698193 26781552 83360 * OTOF 0.47 1 NA 1.19983942905235 127 0.499641924400288 5 5 0 -5.7644102148517 LTS-030 chr2 26781553 27746322 964770 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, EMILIN1, CIB4, ZNF513, TCF23, KRTCAP3, MAPRE3, FTH1P3, IFT172, GCKR, DNAJC5G, GTF3C2, NRBP1, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, PPM1G, SLC35F6, DPYSL5, TRIM54, AGBL5, FNDC4, UCN, SLC30A3, CAD, ABHD1, SLC5A6, EIF2B4, OTOF, SNX17) 0.455900755776874 34 0.0437622506403084 1.08465292071345 2813 0.498345237803506 4 2 2 -6.84030862596722 LTS-030 chr2 27746323 27746419 97 * GCKR NA 0 NA 0.39 1 NA NA NA NA NA LTS-030 chr2 27746420 27885159 138740 * c(GPN1, GCKR, CCDC121, C2orf16, ZNF512, SUPT7L) 0.450815965381341 13 0.0320634387202013 0.862203311805448 530 0.312676651866074 4 2 2 -6.83700027607457 LTS-030 chr2 27885160 27886285 1126 * SUPT7L NA 0 NA 1.637 1 NA NA NA NA NA LTS-030 chr2 27886286 29023354 1137069 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, SLC4A1AP, FOSL2, SPDYA, PPP1CB, RBKS, MRPL33, BRE, SUPT7L) 0.459638889861762 10 0.0236492893950091 1.20549375000593 978 0.570098263400996 6 3 3 -7.21946092387535 LTS-030 chr2 29023355 48872301 19848947 * c(SLC8A1-AS1, LINC01126, LINC01119, ARHGEF33, LOC100271832, LOC100288911, CEBPZOS, MIR4765, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, GTF2A1L, STON1, PPP1R21, PLEKHH2, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, OXER1, FAM179A, KCNG3, EPAS1, WDR43, RHOQ, HAAO, PRKD3, ALK, SPDYA, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, SNORD53, EML4, LINC00486, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, MSH6, EHD3, FOXN2, NA NA NA NA NA NA NA NA NA LTS-030 CDKL4, LOC375196, C2orf71, LOC388942, TMEM247, LINC01118, SULT6B1, C2orf91, LINC01121, LTBP1, EPCAM, CAPN14, MSH2, MEMO1, CRIM1, DYNC2LI1, YPEL5, VIT, PIGF, HEATR5B, PPM1B, PPP1CB, TRMT61B, SRBD1, NDUFAF7, TTC27, SLC30A6, PRKCE, EIF2AK2, KCNK12, TTC7A, BIRC6, MTA3, NLRC4, THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, SPAST, SRD5A2, ZFP36L2, STRN, SNORD92, MIR558, MIR559, LOC728730, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 C1GALT1C1L, MORN2, XDH, GALNT14, CLIP4, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, LBH, YIPF4, DPY30, MAP4K3, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, CAPN13, HNRNPLL, CRIPT, PREPL, FEZ2, SOCS5) 0.435749833349601 139 0.0778321830114926 0.995807758232208 11633 0.645780142019229 4 2 2 -6.73436040972096 LTS-030 NA NA NA NA LTS-030 chr2 48872302 48873622 1321 * c(GTF2A1L, STON1-GTF2A1L) NA 0 NA 0.698 1 NA NA NA NA NA LTS-030 chr2 48873623 53832111 4958489 * c(GTF2A1L, FSHR, STON1-GTF2A1L, LHCGR, NRXN1) 0.420165546669227 13 0.132016510233982 0.794800612212142 702 0.36499075386011 3 2 1 -6.80797769981945 LTS-030 chr2 53832112 53897240 65129 * ASB3 NA 0 NA 1.789 1 NA NA NA NA NA LTS-030 chr2 53897241 54150430 253190 * c(MIR3682, GPR75, PSME4, ERLEC1, CHAC2, ASB3) 0.428667232355646 9 0.0517005265393346 1.31606897087257 389 0.654376898488141 7 4 3 -6.74894747136146 LTS-030 chr2 54150431 54159891 9461 * PSME4 0.335 1 NA 1.17737699207605 29 0.243741969679518 5 5 0 -5.76444658015931 LTS-030 chr2 54159892 64069022 9909131 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR4432, MIR5192, CCT4, B3GNT2, CFAP36, CCDC85A, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, TMEM17, EFEMP1, PSME4, EHBP1, LOC339803, C2orf74, PRORSD1P, TSPYL6, EML6, LINC01122, LINC01185, MIR216A, MIR217, MDH1, MTIF2, OTX1, WDPCP, PEX13, BCL11A, FANCL, CCDC88A, RPL23AP32, RTN4, PPP4R3B, REL, RPS27A, PAPOLG, SPTBN1, UGP2, VRK2, XPO1, FAM161A, KIAA1841, PNPT1, USP34, NA NA NA NA NA NA NA NA NA LTS-030 ACYP2) 0.352688457019617 61 0.0891996440729011 1.39316919316744 4325 0.821485032334707 6 4 2 -6.73431354290335 LTS-030 NA NA NA NA LTS-030 chr2 64069023 64082627 13605 * UGP2 NA 0 NA 2.02133873769892 19 2.03476624517772 9 NA NA -5.76441029851771 LTS-030 chr2 64082628 64083379 752 * UGP2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-030 chr2 64083380 64202664 119285 * c(VPS54, UGP2) 0.119 1 NA 1.12865414123027 186 0.451716489926084 5 5 0 -5.76574920930492 LTS-030 chr2 64202665 68520800 4318136 * c(MIR4434, MIR4778, ACTR2, C1D, WDR92, LINC00309, SPRED2, CEP68, CNRIP1, LGALSL, LOC339807, LOC400958, MEIS1, VPS54, ETAA1, AFTPH, PPP3R1, PNO1, PELI1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, SERTAD2) 0.102885580347396 35 0.0483287412094579 1.00255309178897 1494 0.5456923535933 4 4 0 -6.73731270036121 LTS-030 chr2 68520801 69298817 778017 * c(PROKR1, GKN2, APLF, CNRIP1, BMP10, PLEK, FBXO48, GKN1, ANTXR1, ARHGAP25) 0.124038748384335 15 0.0532806585115891 0.772969967849794 631 0.345307399961091 3 3 0 -6.73748933270014 LTS-030 chr2 69298818 69298876 59 * ANTXR1 NA 0 NA 1.522 1 NA NA NA NA NA LTS-030 chr2 69298877 73675245 4376369 * c(SNORA36C, LOC100133985, MIR3126, MPHOSPH10, SMYD5, CCT7, SNRNP27, TEX261, ADD2, FBXO41, ASPRV1, CLEC4F, EGR4, EMX1, AAK1, EXOC6B, VAX2, RAB11FIP5, GFPT1, NFU1, ZNF638, ANXA4, FIGLA, NOTO, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, C2orf42, NAGK, CYP26B1, GMCL1, SNRPG, SPR, TGFA, TIA1, ALMS1, OR7E91P, ANKRD53, DYSF, ANTXR1, PRADC1, MCEE, FAM136A, SFXN5) 0.0891614830579497 95 0.0452953552246498 0.988126262296475 4560 0.695360069779119 4 4 0 -6.76100716234417 LTS-030 chr2 73675246 73762168 86923 * ALMS1 0.0956004360001329 4 0.0408248290463863 0.554318637361657 181 0.215687858921609 4 4 0 -7.10366250593183 LTS-030 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 0.747 1 NA NA NA NA NA LTS-030 chr2 73777367 76975880 3198514 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, GCFC2, ACTG2, ALMS1, MOGS, LRRTM4, INO80B, WDR54, EVA1A, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8, MRPL19) 0.123002202329779 46 0.0756322401413066 1.00187959665862 3240 0.517056135744693 4 4 0 -6.79373461714811 LTS-030 chr2 76975881 79253150 2277270 * c(SNAR-H, REG3G, LRRTM4) 0.406 1 NA 1.27046013328145 91 0.651785339615528 5 5 0 -5.7746811115557 LTS-030 chr2 79253151 85772447 6519297 * c(MIR4264, PARTICL, TGOLN2, TRABD2A, REG3G, CTNNA2, DHFRP3, DNAH6, GGCX, SH2D6, LRRTM1, FUNDC2P2, MAT2A, REG3A, RETSAT, KCMF1, REG1A, REG1B, REG1CP, CAPG, TCF7L1, ELMOD3, SUCLG1, TMSB10) 0.420883336786615 13 0.0647964267770756 0.978948407548463 1580 0.506518210459284 4 2 2 -6.78464215142493 LTS-030 chr2 85772448 85776174 3727 * GGCX NA 0 NA 1.418 1 NA NA NA NA NA LTS-030 chr2 85776175 85843657 67483 * c(USP39, VAMP5, TMEM150A, GGCX, C2orf68, RNF181, VAMP8) NA 0 NA 1.42668767437303 317 0.631212076991434 6 NA NA -5.76444316310122 LTS-030 chr2 85843658 85846258 2601 * USP39 NA 0 NA 0.979 1 NA NA NA NA NA LTS-030 chr2 85846259 87011811 1165553 * c(RNF103-CHMP3, MIR4779, GNLY, USP39, IMMT, POLR1A, LOC284950, MRPL35, CHMP3, PTCD3, KDM3A, SFTPB, RMND5A, REEP1, SNORD94, RNF103, ATOH8, ST3GAL5, LOC90784, CD8A) 0.430774893968653 48 0.0431988177455116 1.01898139065324 1560 0.528153027949844 4 2 2 -6.75373521440155 LTS-030 chr2 87011812 87408318 396507 * c(ANAPC1P1, LOC285074, RMND5A, CD8A, CD8B) 0.434563087916864 3 0.0433166634603052 0.756229855047574 227 0.591986559265841 2 1 1 -6.7750970350348 LTS-030 chr2 87408319 87408572 254 * RMND5A NA 0 NA 0.234 1 NA NA NA NA NA LTS-030 chr2 87408573 87426699 18127 * RMND5A 0.26 1 NA 0.338569820560377 87 0.28526401479951 1 1 0 -5.76792560615248 LTS-030 chr2 87426700 89247197 1820498 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.396046821983888 11 0.0584568216720683 0.882858333669165 659 0.368369355876248 3 2 1 -6.89971224748713 LTS-030 chr2 89247198 89597177 349980 * character(0) 0.381 1 NA 0.40357275343543 113 0.309828429388582 1 1 0 -5.7648025098898 LTS-030 chr2 89597178 89890617 293440 * character(0) NA 0 NA 0.949 1 NA NA NA NA NA LTS-030 chr2 89890618 91955375 2064758 * LOC654342 0.338203175601884 28 0.091767844594865 0.89204510840255 230 0.833648930304317 3 2 1 -6.84162233390024 LTS-030 chr2 91955376 91955470 95 * character(0) NA 0 NA 1.10823106738237 3 0.151265770527682 5 NA NA -5.76442593174039 LTS-030 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.369 1 NA 1.82054755992233 3 1.44451456667399 8 8 0 -5.7644101364417 LTS-030 chr2 95537246 95848354 311109 * c(TEKT4, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.275054042544169 9 0.0982001923510223 1.05306624846684 295 0.57770419129649 4 3 1 -6.77109974861467 LTS-030 chr2 95848355 95945568 97214 * c(PROM2, ZNF2) 0.49 1 NA 1.15084733565175 95 0.63496526961482 5 5 0 -5.76466924707131 LTS-030 chr2 95945569 96049093 103525 * c(PROM2, KCNIP3) 0.433674558345219 3 0.10373684655576 1.17944185796709 122 0.658237724774841 4 2 2 -6.73830599052919 LTS-030 chr2 96049094 96049699 606 * KCNIP3 NA 0 NA 0.842 1 NA NA NA NA NA LTS-030 chr2 96049700 96789827 740128 * c(TRIM43, GPAT2, ADRA2B, KCNIP3, ASTL, FAHD2A, TRIM43B, FAHD2CP) 0.410348140119809 38 0.0643409083657624 0.824039887389269 590 0.427352918215651 3 2 1 -6.92637381242262 LTS-030 chr2 96789828 97652343 862516 * c(MIR3127, ARID5A, ITPRIPL1, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, LMAN2L, FER1L5, NEURL3, CIAO1) 0.444496172195679 29 0.0521150678361499 1.05672061419861 1924 0.442888076016005 4 2 2 -6.74861836399343 LTS-030 chr2 97652344 97653970 1627 * character(0) NA 0 NA 0.423 1 NA NA NA NA NA LTS-030 chr2 97653971 97749756 95786 * FAHD2B NA 0 NA 0.54725141204883 58 0.346335756369958 2 NA NA -5.76829059623316 LTS-030 chr2 97749757 112523923 14774167 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, ACTR1B, TXNDC9, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, TMEM182, COX5B, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, VWA3B, CREG2, LINC00116, FHL2, TMEM131, LYG2, UNC50, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1R1, INPP4A, NA NA NA NA NA NA NA NA NA LTS-030 ANKRD36, SLC9A4, AFF3, LIMS1, SULT1C3, NPAS2, NPHP1, COA5, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, ANKRD36B, RANBP2, SLC5A7, RPL31, MRPS9, SOWAHC, RGPD3, SLC9A2, SULT1C2, SNORD89, BUB1, LINC01125, RGPD4-AS1, RFX8, ZAP70, IL1R2, MALL, PDCL3, C2orf49, UXS1, TSGA10, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.433670187934073 125 0.0605492196481507 0.96866125608598 7701 0.506669337336161 4 2 2 -6.7718724641146 LTS-030 NA NA NA NA LTS-030 chr2 112523924 112543007 19084 * ANAPC1 0.493 1 NA 0.440420253271878 92 0.290765441216834 1 1 0 -5.76578493824457 LTS-030 chr2 112543008 112543013 6 * ANAPC1 NA 0 NA 1.248 1 NA NA NA NA NA LTS-030 chr2 112543014 113789413 1246400 * c(MERTK, FBLN7, TTL, CKAP2L, IL36B, IL37, IL36A, IL1A, IL1B, ZC3H6, FLJ42351, IL36G, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.447760301216371 44 0.0388169935105856 0.953346078541956 1679 1.20181565025284 4 2 2 -6.76715876142082 LTS-030 chr2 113789414 113816908 27495 * c(IL36RN, IL36B) NA 0 NA 2.122 1 NA NA NA NA NA LTS-030 chr2 113816909 114004574 187666 * c(PSD4, IL36RN, IL1RN, PAX8-AS1, PAX8, IL1F10) 0.399187793722969 10 0.0603136247736225 1.53591842741981 449 0.6086881085746 8 5 3 -6.76604178160965 LTS-030 chr2 114004575 114035847 31273 * c(PAX8-AS1, PAX8) NA 0 NA 0.538 1 NA NA NA NA NA LTS-030 chr2 114035848 114425155 389308 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, WASH2P, FAM138B, PAX8, DDX11L2) NA 0 NA 0.786595025734122 105 0.477657272299103 3 NA NA -5.76467713053892 LTS-030 chr2 114425156 114425311 156 * character(0) NA 0 NA 1.687 1 NA NA NA NA NA LTS-030 chr2 114425312 114688902 263591 * c(MIR4782, ACTR3, SLC35F5) NA 0 NA 1.62485505334633 151 0.74089470767358 7 NA NA -5.76446899207014 LTS-030 chr2 114688903 114688908 6 * ACTR3 NA 0 NA 1.145 1 NA NA NA NA NA LTS-030 chr2 114688909 125405302 10716394 * c(RNU4ATAC, LOC100499194, ACTR3, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, CLASP1, NIFK-AS1, GLI2, TFCP2L1, INHBB, DPP10-AS1, LINC01191, INSIG2, CCDC93, STEAP3, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, TMEM177, NIFK, LINC01101, MARCO, DDX18) 0.434033955408514 50 0.0834824410231497 0.960870745308414 3070 0.425326022673166 4 2 2 -6.79095582547635 LTS-030 chr2 125405303 127414216 2008914 * c(CNTNAP5, GYPC) NA 0 NA 0.809147275074959 98 0.350893346992504 3 NA NA -5.76584734426033 LTS-030 chr2 127414217 127447811 33595 * GYPC NA 0 NA 0.731 1 NA NA NA NA NA LTS-030 chr2 127447812 127808161 360350 * c(BIN1, GYPC) 0.148 1 NA 0.57243007942891 71 0.209409746313553 2 2 0 -5.77439575260657 LTS-030 chr2 127808162 130737359 2929198 * c(RAB6C-AS1, MIR4783, MAP3K2, ERCC3, BIN1, GPR17, CYP27C1, LOC389033, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, UGGT1, SAP130, AMMECR1L, RAB6C, SFT2D3, HS6ST1) 0.16526749936527 50 0.0694779483442225 0.644956987430665 2211 0.37473589825975 2 2 0 -6.80125808314232 LTS-030 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.194 1 NA NA NA NA NA LTS-030 chr2 130737484 130739919 2436 * c(RAB6C-AS1, RAB6C) 0.353 1 NA 0.296000658315343 50 0.113984290002381 1 1 0 -5.77428639505524 LTS-030 chr2 130739920 130750378 10459 * RAB6C NA 0 NA 0.665 1 NA NA NA NA NA LTS-030 chr2 130750379 132111206 1360828 * c(CYP4F30P, FAR2P2, TUBA3E, FAM168B, AMER3, PTPN18, MED15P9, GPR148, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, POTEI, CFC1B, POTEJ, POTEF, MZT2B, CCDC115, CCDC74B, IMP4) 0.277283095275708 12 0.0987847368899884 0.617026504156519 1117 0.456722183766876 2 2 0 -7.42578978416043 LTS-030 chr2 132111207 132119075 7869 * c(WTH3DI, PLEKHB2) NA 0 NA 0.289 1 NA NA NA NA NA LTS-030 chr2 132119076 132227894 108819 * c(WTH3DI, LINC01120, NOC2LP2) NA 0 NA 0.277076791471671 134 0.186157861081689 0 NA NA -5.97230962039366 LTS-030 chr2 132227895 132287684 59790 * c(MIR4784, TUBA3D, LOC150776, MZT2A, CCDC74A) NA 0 NA 0.589948913027883 204 0.342444684755452 2 NA NA -5.7644780095258 LTS-030 chr2 132287685 132291265 3581 * CCDC74A NA 0 NA 0.280746223331458 55 0.18280952350882 1 NA NA -5.77225153812395 LTS-030 chr2 132291266 132491372 200107 * C2orf27A NA 0 NA 0.764 1 NA NA NA NA NA LTS-030 chr2 132491373 133540170 1048798 * c(MIR663B, LYPD1, GPR39, C2orf27A, NCKAP5, C2orf27B, ANKRD30BL) 0.267937771225737 12 0.0787791312160239 0.800666973853399 198 0.450266435478512 4 3 1 -6.97668392243076 LTS-030 chr2 133540171 133540176 6 * NCKAP5 0.12 1 NA 0.134 1 NA NA NA NA NA LTS-030 chr2 133540177 142889274 9349098 * c(CCNT2-AS1, MIR3679, LOC100507600, NXPH2, ACMSD, DARS, RAB3GAP1, UBXN4, R3HDM1, HNMT, SPOPL, NCKAP5, LCT, MIR128-1, MCM6, MGAT5, LRP1B, YY1P2, CXCR4, MAP3K19, THSD7B, TMEM163, ZRANB3, CCNT2) 0.171238534979932 59 0.0848027759710165 0.53511724145876 2929 0.25108008275032 2 2 0 -7.69166862541286 LTS-030 chr2 143642881 145255210 1612330 * c(ARHGAP15, GTDC1, KYNU, ZEB2) 0.154811470984473 7 0.0731547609361076 0.432589649073752 419 0.30045518934202 1 1 0 -7.65105291329925 LTS-030 chr2 145255211 147346206 2090996 * c(ZEB2-AS1, TEX41, PABPC1P2, ZEB2) NA 0 NA 0.626679102023955 30 0.372737182068749 2 NA NA -5.78304937541913 LTS-030 chr2 147346207 147596973 250767 * PABPC1P2 0.371 1 NA 1.07341485123463 3 0.361118170871161 4 4 0 -5.77019536974846 LTS-030 chr2 147596974 157467300 9870327 * c(LOC100144595, MIR4773-1, MIR4773-2, STAM2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, EPC2, ARL5A, MMADHC, GPD2, RBM43, KCNJ3, KIF5C, RND3, NEB, NR4A2, ORC4, RIF1, PRPF40A, MBD5, RPRM, TNFAIP6, CACNB4, NMI, ACVR2A) 0.445944065114456 42 0.0681783716441399 0.969848486577991 3892 0.451782537305071 4 2 2 -6.76698319863372 LTS-030 chr2 157467301 159028780 1561480 * c(GALNT5, ACVR1C, CCDC148, UPP2, GPD2, CCDC148-AS1, ERMN, ACVR1, CYTIP) 0.420525958457752 5 0.0558506938184299 0.755949993986284 582 0.335932304267884 3 2 1 -7.15742915873496 LTS-030 chr2 159028781 159032951 4171 * c(CCDC148, CCDC148-AS1) NA 0 NA 1.157 1 NA NA NA NA NA LTS-030 chr2 159032952 162081237 3048286 * c(TANK, LY75-CD302, MIR4785, CCDC148, WDSUB1, PLA2R1, BAZ2B, ITGB6, LY75, CCDC148-AS1, RBMS1, MARCH7, PKP4, TANC1, DAPL1, CD302) 0.444500326679575 38 0.0359821850183021 0.975618128118431 1737 0.493810752695853 4 2 2 -6.75347433821124 LTS-030 chr2 162081238 164450352 2369115 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.415120976188688 19 0.108854293943517 0.724821926374048 1076 0.419776835337688 3 2 1 -6.89608496403651 LTS-030 chr2 164450353 164459089 8737 * character(0) NA 0 NA 1.32 1 NA NA NA NA NA LTS-030 chr2 164459090 166845995 2386906 * c(SNORA70F, LOC100506124, TTC21B-AS1, SLC38A11, COBLL1, GALNT3, GRB14, FIGN, SCN1A, SCN2A, SCN3A, TTC21B, CSRNP3) 0.436996924764404 19 0.046244329508556 0.933209952768781 1643 0.439326059703106 4 2 2 -6.76903390048627 LTS-030 chr2 166845996 170387895 3541900 * c(MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CERS6, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN7A, SCN9A, FASTKD1, ABCB11, B3GALT1) 0.421296962245367 25 0.104796739771172 0.793875047209424 2286 0.402938386116225 3 2 1 -6.8561938100837 LTS-030 chr2 170387896 170387901 6 * FASTKD1 NA 0 NA 1.565 1 NA NA NA NA NA LTS-030 chr2 170387902 176972303 6584402 * c(MIR933, SP9, NA, PHOSPHO2-KLHL23, RAPGEF4, CHN1, CHRNA1, CCDC173, UBR3, ATF2, MYO3B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, SP5, LINC01124, PHOSPHO2, PDK1, ZAK, ATP5G3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, PPIG, CIR1, TLK1) 0.441233657848066 78 0.0698607100917162 0.960773257102904 4885 0.562877573883515 4 2 2 -6.75375858442656 LTS-030 chr2 176972304 176972521 218 * HOXD11 NA 0 NA 2.504 1 NA NA NA NA NA LTS-030 chr2 176972522 178378623 1406102 * c(LOC100130691, MIR1246, MIR3128, HOXD-AS2, MTX2, HNRNPA3, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, LINC01116, HAGLR, MIR10B, NFE2L2, AGPS) 0.450907918046627 12 0.0587681628919687 1.16351586260396 674 0.68556902236881 4 2 2 -6.7999565556195 LTS-030 chr2 178378624 179397541 1018918 * c(MIR548N, TTN-AS1, OSBPL6, RBM45, TTC30B, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, AGPS, PRKRA, TTC30A) 0.385491518478728 21 0.0688414672929595 0.887018372377145 1107 0.424610590213597 3 2 1 -6.78778504143307 LTS-030 chr2 179397542 179645966 248425 * c(MIR548N, TTN-AS1, TTN) 0.440778516147865 57 0.0359847851446241 0.645963650742418 2867 0.220050005725848 2 1 1 -6.75278960328119 LTS-030 chr2 179645967 179646909 943 * TTN NA 0 NA 1.15 1 NA NA NA NA NA LTS-030 chr2 179646910 182541589 2894680 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, CCDC141, ITGA4, CERKL, NEUROD1, CWC22, TTN, SESTD1) 0.450980800315138 15 0.0372072701549167 0.77500510094004 1179 0.333840446287665 4 2 2 -7.67068246098742 LTS-030 chr2 182541590 202687649 20146060 * c(LOC100130452, NEMP2, MIR1245A, MIR3129, MIR3606, LOC100507140, HSPE1-MOB4, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, CLK1, COL3A1, COL5A2, NUP35, TYW5, RFTN2, KCTD18, ALS2CR12, DUSP19, SATB2-AS1, ANKAR, ZSWIM2, PPP1R1C, SGO2, ALS2CR11, FAM171B, C2orf69, SATB2, SF3B1, TMEFF2, FRZB, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, SLC40A1, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, ITGAV, CERKL, NA NA NA NA NA NA NA NA NA LTS-030 FSIP2, C2orf66, MYO1B, NAB1, NDUFB3, NEUROD1, ORC2, PDE1A, GULP1, PLCL1, PMS1, PPIL3, DNAJC10, ASNSD1, MFSD6, STRADB, ZC3H15, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, OSGEPL1, NABP1, CDK15, TMEM237, CFLAR-AS1, TRAK2, BOLL, SSFA2, STAT1, STAT4, MIR561, TFPI, C2orf47, PGAP1, COQ10B, CASP8, WDR75, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, ZNF804A, STK17B, MARS2, GTF3C3, ORMDL1, BZW1) 0.432400527800098 129 0.0744677195491104 0.910433699194468 10866 0.503342923034772 4 2 2 -7.13039595063401 LTS-030 NA NA NA NA LTS-030 chr2 202687650 202688339 690 * CDK15 NA 0 NA 1.293 1 NA NA NA NA NA LTS-030 chr2 202688340 207027446 4339107 * c(SNORD11B, GCSHP3, KIAA2012, ABI2, PARD3B, ICA1L, CTLA4, FAM117B, EEF1B2, SNORD51, ICOS, NDUFS1, NOP58, INO80D, WDR12, CYP20A1, SNORA41, RAPH1, CDK15, NBEAL1, BMPR2, SNORD11, SNORD70, SUMO1, CARF, FZD7, NRP2, CD28) 0.434500203189105 38 0.0892242408169433 1.02071174218102 3115 0.609735133585047 4 2 2 -6.73726206931618 LTS-030 chr2 207027447 207027606 160 * EEF1B2 NA 0 NA 0.442 1 NA NA NA NA NA LTS-030 chr2 207027607 207834257 806651 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, EEF1B2, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, ADAM23) 0.445884917206513 15 0.040739240472617 0.726433652000318 821 0.351162066166462 2 1 1 -6.89500692743419 LTS-030 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.214 1 NA NA NA NA NA LTS-030 chr2 207908643 208992872 1084230 * c(MIR2355, LOC100507443, MIR4775, CREB1, CRYGC, CRYGD, METTL21A, CCNYL1, PLEKHM3, FZD5, KLF7) 0.478481444217246 4 0.0242624538467705 1.03603116773449 872 0.605252839475557 4 2 2 -8.02928339813456 LTS-030 chr2 208992873 211441239 2448367 * c(LOC100507443, IDH1-AS1, LANCL1, CPS1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, PIKFYVE, UNC80, ACADL, IDH1, C2orf80, MAP2, MYL1, PTH2R, RPE) 0.434012784830964 32 0.0545399749813634 0.818464848928034 1771 0.444235557727709 4 2 2 -7.0221143530974 LTS-030 chr2 211441240 211442147 908 * CPS1 NA 0 NA 1.075 1 NA NA NA NA NA LTS-030 chr2 211442148 216248966 4806819 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, CPS1, ERBB4, IKZF2, FN1, ABCA12, CPS1-IT1, VWC2L, ATIC, BARD1, SPAG16) 0.443789771481506 49 0.054994256038962 0.939849653368838 1622 0.516452887226449 4 2 2 -6.77961492723355 LTS-030 chr2 216248967 216249540 574 * FN1 NA 0 NA 1.141 1 NA NA NA NA NA LTS-030 chr2 216249541 219142734 2893194 * c(ARPC2, AAMP, PKI55, GPBAR1, FN1, PNKD, RUFY4, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, SMARCAL1, MREG, PECR, MARCH4, RPL37A, TMBIM1, LINC00607, TNP1, TNS1, DIRC3, XRCC5, TMEM169) 0.434279499604335 31 0.0882860575458506 1.09070374283587 1846 0.850902925508042 4 2 2 -6.75251160522552 LTS-030 chr2 219142735 219143110 376 * c(PNKD, TMBIM1) NA 0 NA 1.453 1 NA NA NA NA NA LTS-030 chr2 219143111 219270214 127104 * c(PNKD, CATIP, MIR26B, CTDSP1, TMBIM1, SLC11A1) 0.37 1 NA 1.47161585627501 395 0.667714566737291 6 6 0 -5.76482136504023 LTS-030 chr2 219270215 220037085 766871 * c(LOC100129175, MIR3131, CRYBA2, SLC23A3, LINC00608, CYP27A1, CFAP65, CNPPD1, STK36, IHH, MIR375, PRKAG3, FEV, USP37, CTDSP1, BCS1L, RNF25, VIL1, WNT6, ZNF142, NHEJ1, WNT10A, PLCD4, CDK5R2, CNOT9, TTLL4) 0.474170837749722 3 0.00873689494805408 0.97493194116551 2017 0.98925841018624 4 2 2 -11.1146598139176 LTS-030 chr2 220037086 224461948 4424863 * c(MIR4268, MIR3132, FARSB, ABCB6, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CNPPD1, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, PAX3, ANKZF1, ASIC4, PTPRN, SLC4A3, TUBA4A, SCG2, ATG9A, FAM134A, GLB1L, CHPF, TUBA4B, STK16) 0.441134863832225 53 0.0724083375308174 1.08725853737445 3173 0.545806313568309 4 2 2 -6.79547687311691 LTS-030 chr2 224461949 231407863 6945915 * c(MIR4439, MIR5702, MIR5703, SP140, COL4A3, COL4A4, AP1S3, FBXO36, SLC16A14, DAW1, AGFG1, SP110, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SP100, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER, TRIP12, SP140L) 0.436207478847755 92 0.0729993381365253 0.869373976234916 3937 0.673055344394864 4 2 2 -6.90875659503117 LTS-030 chr2 231407864 231407865 2 * SP100 NA 0 NA 1.148 1 NA NA NA NA NA LTS-030 chr2 231407866 233272825 1864960 * c(MIR1471, MIR4777, NMUR1, DIS3L2, SPATA3, LOC151475, LINC00471, LOC151484, C2orf57, ALPP, ALPPL2, C2orf72, SNORD82, HTR2B, ECEL1P2, SPATA3-AS1, NCL, NPPC, PDE6D, CAB39, PSMD1, PTMA, SNORD20, COPS7B, SNORA75, SP100, ARMC9, ITM2C, GPR55, B3GNT7) 0.443825865633054 43 0.0862112063076678 1.04971424792293 1526 0.507732948481548 4 2 2 -6.74540108229895 LTS-030 chr2 233272826 233272961 136 * ALPPL2 NA 0 NA 0.788 1 NA NA NA NA NA LTS-030 chr2 233272962 233274625 1664 * ALPPL2 NA 0 NA 0.483175849283366 40 0.366610838698588 1 NA NA -5.76468785212551 LTS-030 chr2 233274626 234474325 1199700 * c(CHRND, CHRNG, TIGD1, ALPI, ALPPL2, NGEF, GIGYF2, INPP5D, KCNJ13, C2orf82, NEU2, ATG16L1, USP40, SAG, PRSS56, SCARNA6, SCARNA5, EFHD1, DGKD, ECEL1, EIF4E2) 0.434103766117882 29 0.0998981624312622 0.996639339189721 2000 0.499433238779468 4 2 2 -6.73429886443647 LTS-030 chr2 234474326 234526272 51947 * USP40 NA 0 NA 0.531 1 NA NA NA NA NA LTS-030 chr2 234526273 234681280 155008 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0.43814347863793 6 0.0417165035287794 0.572789295325761 266 0.249454873286159 2 1 1 -6.73606115153933 LTS-030 chr2 234681281 234681370 90 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) NA 0 NA 1.191 1 NA NA NA NA NA LTS-030 chr2 234681371 239000702 4319332 * c(UBE2F-SCLY, ARL4C, RAMP1, COPS8, AGAP1, COL6A3, UBE2F, MSL3P1, SH3BP4, GBX2, RBM44, ASB18, PRLH, SCLY, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, ACKR3, RAB17, SPP2, TRPM8, MLPH, IQCA1, LRRFIP1) 0.445392946432891 73 0.0643948678906517 0.956382314573471 2536 0.524792687163964 4 2 2 -6.75828040653094 LTS-030 chr2 239000703 239002382 1680 * c(UBE2F-SCLY, SCLY) NA 0 NA 1.205 1 NA NA NA NA NA LTS-030 chr2 239002383 240219906 1217524 * c(UBE2F-SCLY, MIR4440, MIR4441, TWIST2, LINC01107, LOC151174, TRAF3IP1, ESPNL, KLHL30, FLJ43879, SCLY, ASB1, HES6, LOC643387, ILKAP, MGC16025, PER2, HDAC4) 0.459256858790845 27 0.0330215331627962 1.1665254090045 1261 0.527140954227287 4 2 2 -7.0199948794078 LTS-030 chr2 240219907 241079884 859978 * c(MIR4269, MIR2467, MIR4786, OTOS, COPS9, OR6B3, LOC150935, OR6B2, NDUFA10, PRR21, HDAC4) 0.435841910389047 7 0.054591993133478 0.859899907443767 491 0.442746234265492 4 2 2 -6.79398287276141 LTS-030 chr2 241079885 241420576 340692 * c(PP14571, OTOS, GPC1, MIR149, ANKMY1) NA 0 NA 1.06270468084364 173 0.407385970065239 4 NA NA -5.76896235949296 LTS-030 chr2 241420577 241421482 906 * ANKMY1 NA 0 NA 0.61 1 NA NA NA NA NA LTS-030 chr2 241421483 241462456 40974 * ANKMY1 0.246 1 NA 0.639075964028709 67 0.202421319957671 2 2 0 -5.76695112759104 LTS-030 chr2 241462457 242836535 1374079 * c(BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.153871906389734 81 0.0586491398482388 0.655890224796297 3205 0.583904339017086 2 2 0 -6.77462962909855 LTS-030 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.696710311629319 28 0.224580573208 3 NA NA -5.8092053452502 LTS-030 chr3 239351 1215013 975663 * c(CHL1, CNTN6) 0.372 1 NA 0.973732568723296 227 0.329564660519502 4 4 0 -5.76822661441601 LTS-030 chr3 1215014 4355917 3140904 * c(CNTN4-AS2, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.38663910385526 19 0.107063488843185 0.910370100711122 667 0.407325570293184 3 2 1 -6.92815615534917 LTS-030 chr3 4355918 9932562 5576645 * c(EGOT, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, ARPC4, TADA3, CPNE9, THUMPD3, TTLL3, SUMF1, RPUSD3, GRM7, LINC00312, LMCD1, ITPR1, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SSUH2, ARL8B, SETD5, RAD18, CIDEC, SETMAR, MTMR14, BRPF1, JAGN1, CAMK1, BHLHE40, CAV3, EDEM1, SRGAP3) 0.406421823867187 44 0.071374407355648 1.2065089429762 3093 0.652043768801021 5 3 2 -6.7355323746039 LTS-030 chr3 9932563 9934558 1996 * c(CIDEC, JAGN1) NA 0 NA 0.832 1 NA NA NA NA NA LTS-030 chr3 9934559 16524209 6589651 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, MIR4270, FGD5-AS1, SH3BP5-AS1, PRRT3-AS1, SLC6A1-AS1, ATG7, FANCD2OS, GALNT15, CHCHD4, METTL6, TAMM41, IL17RE, FGD5, CIDECP, FANCD2, FBLN2, CAND2, RFTN1, NUP210, ANKRD28, CAPN7, MKRN2, HACL1, LSM3, PRRT3, LINC00606, LINC00620, DPH3, HRH1, COL6A4P1, TPRXL, IRAK2, LOC401052, ATP2B2, CCDC174, GHRL, PPARG, TMEM40, EMC3, BRK1, RAF1, RPL32, CIDEC, SEC13, RBSN, MRPS25, SLC6A1, NA NA NA NA NA NA NA NA NA LTS-030 SLC6A6, SLC6A11, SYN2, BTD, MIR563, TIMP4, NR2C2, VHL, WNT7A, XPC, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, EAF1, OXNAD1, SH3BP5, VGLL4, TATDN2, IQSEC1) 0.371671402603498 155 0.0749210857004246 0.810890043042666 6537 0.368193301870351 3 2 1 -6.73930067865376 LTS-030 NA NA NA NA LTS-030 chr3 16524210 20053837 3529628 * c(MIR3714, MIR4791, KCNH8, PP2D1, EFHB, DAZL, RFTN1, PLCL2, LOC339862, RAB5A, SATB1, TBC1D5) 0.356321342187085 20 0.0769660895938492 0.591725764718755 991 0.393160945186556 2 1 1 -7.35303158843168 LTS-030 chr3 20053838 20081505 27668 * character(0) NA 0 NA 1.644 1 NA NA NA NA NA LTS-030 chr3 20081506 38674898 18593393 * c(ACVR2B-AS1, PDCD6IP, MIR548AC, MIR4792, MIR4442, SGO1-AS1, OSBPL10-AS1, CTDSPL, CRTAP, ARPP21, CMTM7, OSBPL10, LRRC3B, CCR4, TRIM71, SGO1, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, NKIRAS1, LINC00692, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, VENTXP7, MIR128-2, MIR26A1, MLH1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, OXSM, NGLY1, RARB, RPL15, SCN5A, NA NA NA NA NA NA NA NA NA LTS-030 AZI2, TMPPE, THRB-AS1, LINC00693, STAC, TGFBR2, THRB, TOP2B, UBE2E1, UBE2E2, UBP1, ZNF385D, EOMES, DCLK3, KAT2B, LRRFIP2, ACVR2B, SLC22A14, SLC22A13, SLC4A7, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.36270306547962 157 0.0804406059325919 0.78221088076667 7725 0.408903673462554 3 2 1 -6.77508684587167 LTS-030 NA NA NA NA LTS-030 chr3 38674899 38738331 63433 * SCN5A NA 0 NA 0.667 1 NA NA NA NA NA LTS-030 chr3 38738332 39140979 402648 * c(SCN11A, WDR48, SCN10A, GORASP1) 0.404339157430579 11 0.0604325318772175 0.634218262730236 588 0.235195264693069 2 1 1 -6.93472874813652 LTS-030 chr3 39140980 39224757 83778 * c(XIRP1, TTC21A, CSRNP1, GORASP1) 0.384474605741257 7 0.0334735147613182 0.93646690071942 305 0.363200232171867 3 2 1 -6.80694094976683 LTS-030 chr3 39224758 40559669 1334912 * c(EIF1B, CCR8, CX3CR1, XIRP1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, RPL14, ENTPD3) 0.383956667154444 25 0.0490679800548858 0.693246199587112 865 0.541552403009153 3 2 1 -6.81534505796529 LTS-030 chr3 40559670 40573556 13887 * c(ZNF620, ZNF621) 0.19 1 NA 0.615327431439332 25 0.234763710994694 2 2 0 -5.76452216265211 LTS-030 chr3 40573557 42916013 2342457 * c(CCDC13-AS1, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CYP8B1, TRAK1, HIGD1A, ZNF621, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, SEC22C, ZBTB47) 0.166029778764028 39 0.0720098115222196 0.626167223046481 1671 0.28991050413066 2 2 0 -6.76635373421104 LTS-030 chr3 42916014 44791637 1875624 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, ACKR2, CYP8B1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, SNRK, ANO10, ZKSCAN7, KIAA1143, FAM198A, ZNF35, POMGNT2, ZNF502) 0.178806132578627 18 0.0468411653488876 0.535030500943062 1723 0.3519655681789 2 2 0 -6.89756896921584 LTS-030 chr3 44791638 44794509 2872 * KIAA1143 NA 0 NA 0.228713385589738 60 0.0784630522282415 0 NA NA -5.77038488577307 LTS-030 chr3 44794510 45883676 1089167 * c(LARS2-AS1, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, ZDHHC3, LZTFL1, SLC6A20, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TGM4, CLEC3B, LIMD1) 0.184021599519911 25 0.0654387245189472 0.606615631761137 1508 0.274736322380077 2 2 0 -6.78463279434062 LTS-030 chr3 45883677 45896445 12769 * LZTFL1 NA 0 NA 0.362 1 NA NA NA NA NA LTS-030 chr3 45896446 45943456 47011 * c(CCR9, LZTFL1) NA 0 NA 0.231589159557019 39 0.0629763895521619 0 NA NA -5.93837619148412 LTS-030 chr3 45943457 45943543 87 * c(CCR9, LZTFL1) NA 0 NA 0.494 1 NA NA NA NA NA LTS-030 chr3 45943544 46714821 771278 * c(LOC100132146, CXCR6, CCR9, CCR1, CCR3, CCR5, ALS2CL, XCR1, LTF, LZTFL1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.165477665636159 20 0.0634644326416483 0.526283339669437 1128 0.262104311574424 2 2 0 -6.8432676071054 LTS-030 chr3 46714822 46714907 86 * ALS2CL NA 0 NA 0.61 1 NA NA NA NA NA LTS-030 chr3 46714908 48606955 1892048 * c(NRADDP, PRSS46, MIR1226, MIR4443, NME6, CSPG5, TREX1, COL7A1, CCDC12, DHX30, SCAP, NBEAL2, KLHL18, ALS2CL, TMIE, PTPN23, FBXW12, KIF9-AS1, SETD2, PRSS50, PRSS42, PRSS45, MAP4, MYL3, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, PTH1R, KIF9, SPINK8, SMARCC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.17459398443719 45 0.0571156721049486 0.624705795155668 3655 0.318568858307555 2 2 0 -6.76982313460306 LTS-030 chr3 48606956 48606994 39 * COL7A1 NA 0 NA 0.422 1 NA NA NA NA NA LTS-030 chr3 48606995 48624145 17151 * c(MIR711, COL7A1) NA 0 NA 0.436754009326656 259 0.150239982919828 1 NA NA -5.76830031533087 LTS-030 chr3 48624146 48624401 256 * COL7A1 NA 0 NA 0.7 1 NA NA NA NA NA LTS-030 chr3 48624402 50212617 1588216 * c(BSN-AS2, MIR4271, MIR4793, RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, ARIH2, USP19, WDR6, COL7A1, DAG1, CELSR3, KLHDC8B, LAMB2P1, NDUFAF3, AMT, GPX1, GMPPB, APEH, CCDC36, IMPDH2, C3orf62, AMIGO3, RHOA, CDHR4, FAM212A, LAMB2, MIR191, TMEM89, MST1, MST1R, MIR425, IP6K2, NCKIPSD, P4HTM, QRICH1, DALRD3, PRKAR2A, QARS, RNF123, SEMA3F, ARIH2OS, C3orf84, CCDC71, SLC26A6, TCTA, UBA7, USP4, UQCRC1, SLC25A20, NA NA NA NA NA NA NA NA NA LTS-030 CAMKV, NICN1, MON1A, BSN, IP6K1) 0.224298098115947 8 0.0576541412215983 0.60769564616524 4858 0.283214610547324 2 2 0 -7.31093849287733 LTS-030 NA NA NA NA LTS-030 chr3 50212618 50214141 1524 * SEMA3F NA 0 NA 1.127 1 NA NA NA NA NA LTS-030 chr3 50214142 50595875 381734 * c(NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, LSMEM2, NAT6, GNAI2, GNAT1, HYAL1, C3orf18, ZMYND10, SEMA3F, IFRD2, SEMA3B, HYAL3, HYAL2, CACNA2D2) 0.167 1 NA 0.724126311752729 1247 0.292141729961478 3 3 0 -5.79054365562041 LTS-030 chr3 50595876 51813595 1217720 * c(MIR4787, CISH, DOCK3, RAD54L2, GRM2, RBM15B, IQCF6, C3orf18, TEX264, HEMK1, MAPKAPK3, MANF, DCAF1) 0.176358781313722 21 0.0871375213042442 0.586187027938999 1358 0.298934197083676 2 2 0 -6.74687006123125 LTS-030 chr3 51813596 51843758 30163 * IQCF1 NA 0 NA 0.396 1 NA NA NA NA NA LTS-030 chr3 51843759 51909621 65863 * c(IQCF4, IQCF1, IQCF2, IQCF5, IQCF3) NA 0 NA 0.353922694245412 79 0.158106739240249 1 NA NA -5.78629865844626 LTS-030 chr3 51909622 51910960 1339 * IQCF1 NA 0 NA 0.74 1 NA NA NA NA NA LTS-030 chr3 51910961 53222761 1311801 * c(SNORD19B, LINC00696, PARP3, ABHD14A-ACY1, TMEM110-MUSTN1, NISCH, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DUSP7, ALAS1, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, SFMBT1, PHF7, TLR9, PBRM1, PRKCD, GLT8D1, SEMA3G, PCBP4, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TNNC1, WDR82, BAP1, ABHD14B, RRP9, RFT1, ACY1) 0.193028649918961 55 0.0576202183464239 0.62308785371963 3945 0.285813565025073 2 2 0 -6.88670631347747 LTS-030 chr3 53222762 53263195 40434 * c(PRKCD, TKT) NA 0 NA 0.556324802782028 66 0.204677275679268 2 NA NA -5.76754365873571 LTS-030 chr3 53263196 53700550 437355 * c(DCP1A, TKT, CACNA1D) 0.45 1 NA 0.736602595888441 143 0.276966449526475 3 3 0 -5.78722077946365 LTS-030 chr3 53700551 56681081 2980531 * c(MIR3938, CACNA2D3-AS1, FAM208A, ERC2, CCDC66, CHDH, IL17RB, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, CACNA1D, ESRG, ACTR8) 0.361564312853787 41 0.0955888362192788 0.734121819083662 1391 0.385431711584328 3 2 1 -6.82840353512249 LTS-030 chr3 56681082 58639539 1958458 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.360133301057273 47 0.0632058806500721 0.840787355735699 2686 0.421064207685766 3 2 1 -6.77638634924825 LTS-030 chr3 58639540 58641240 1701 * FAM3D NA 0 NA 0.49 1 NA NA NA NA NA LTS-030 chr3 58641241 63820869 5179629 * c(PTPRG-AS1, SYNPR-AS1, FAM3D, C3orf49, SNTN, SYNPR, C3orf67, FHIT, LINC00698, FEZF2, C3orf14, PTPRG, THOC7, CADPS) 0.377801644924314 17 0.0735086029379035 0.712492176022853 1131 0.346756644980208 3 2 1 -7.05934194293414 LTS-030 chr3 63820870 67048835 3227966 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, PRICKLE2, LRIG1, ADAMTS9, ATXN7, MIR548A2, THOC7, KBTBD8, MAGI1, PSMD6) 0.40967471165958 17 0.111665927711924 1.15641037668768 1210 0.540374324540691 5 3 2 -6.74240929142408 LTS-030 chr3 67048836 67049346 511 * KBTBD8 NA 0 NA 0.45 1 NA NA NA NA NA LTS-030 chr3 67049347 69024803 1975457 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.392778607018977 6 0.0798390046698145 0.693932700071994 334 0.34454775310418 3 2 1 -6.96148820266648 LTS-030 chr3 69024804 75779281 6754478 * c(ZNF717, MIR1284, MIR1324, MIR3136, ARL6IP5, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, FAM86DP, TMF1, GXYLT2, UBA3) 0.40607557991603 95 0.0712143979931232 0.980337416516105 2205 0.495680641232358 4 2 2 -6.86242778468895 LTS-030 chr3 75779282 75779307 26 * ZNF717 0.275 1 NA 1.34334577493757 4 0.536631701759534 6 6 0 -5.76441022725366 LTS-030 chr3 75779308 77089699 1310392 * c(ZNF717, ROBO2) 0.344785932422137 161 0.0821898333809001 1.12638024735445 330 0.586048108608635 6 4 2 -6.8519903609223 LTS-030 chr3 77089700 78766568 1676869 * c(ROBO1, ROBO2) NA 0 NA 0.94063785809967 362 0.429390499731359 4 NA NA -5.78477733522058 LTS-030 chr3 78766569 81698130 2931562 * c(GBE1, ROBO1) 0.16 1 NA 0.485758592369792 119 0.189360604136891 1 1 0 -7.25924914755647 LTS-030 chr3 81698131 89480265 7782135 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, CGGBP1) 0.20492151360965 14 0.0887472333572795 0.524339706500686 1010 0.252477494805057 2 2 0 -7.92609184569367 LTS-030 chr3 89480266 90283666 803401 * EPHA3 NA 0 NA 0.441133351150353 105 0.171989086245453 1 NA NA -5.93054584134054 LTS-030 chr3 93591838 93593119 1282 * PROS1 0.367 1 NA 0.79998629223015 27 0.169808397135983 3 3 0 -5.76441014892025 LTS-030 chr3 93593120 93847379 254260 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.359 1 NA 1.3428351080972 348 0.706619200483097 6 6 0 -5.76496309862493 LTS-030 chr3 93847380 94224960 377581 * character(0) NA 0 NA 0.558 1 NA NA NA NA NA LTS-030 chr3 94224961 97753877 3528917 * c(MTHFD2P1, CRYBG3, GABRR3, LINC00879, EPHA6, ARL6, MINA) 0.440922954858937 6 0.0482938919533309 0.754696690026559 623 0.331072499059578 2 1 1 -7.62297528523245 LTS-030 chr3 97753878 97806023 52146 * c(GABRR3, OR5AC2) NA 0 NA 0.543 1 NA NA NA NA NA LTS-030 chr3 97806024 98234703 428680 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.428613920104881 8 0.0400408273783504 0.498482499553489 229 0.26921942128619 2 1 1 -6.88741181893453 LTS-030 chr3 98234704 98234817 114 * CLDND1 NA 0 NA 0.797 1 NA NA NA NA NA LTS-030 chr3 98234818 101390209 3155392 * c(MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, DCBLD2, FAM172BP, CPOX, ABI3BP, ZBTB11, GPR15, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, PCNP, SENP7, TMEM30CP, CMSS1, ADGRG7, TOMM70) 0.450439303475354 17 0.0561347512163156 0.871458088991108 2157 0.480511998797912 4 2 2 -6.91076649355426 LTS-030 chr3 101390210 101390357 148 * ZBTB11 NA 0 NA 1.187 1 NA NA NA NA NA LTS-030 chr3 101390358 111630551 10240194 * c(ZBTB11-AS1, LINC00882, PVRL3-AS1, CD96, HHLA2, ZPLD1, LINC00635, DPPA2, LOC152225, ALCAM, MYH15, PLCXD2, NECTIN3, ZBTB11, MORC1, LINC00636, PDCL3P4, DUBR, FLJ22763, LINC01205, TRAT1, IFT57, DPPA4, BBX, KIAA1524, RPL24, NFKBIZ, LINC00488, MIR548A3, ZBED2, CEP97, RETNLB, CCDC54, CBLB, PHLDB2, NXPE3, CD47, GUCA1C, DZIP3) 0.412741702807649 55 0.0682842297088869 0.998015792852818 2890 0.539377869393072 4 2 2 -6.81819759228087 LTS-030 chr3 111630552 116164345 4533794 * c(ZBTB20-AS1, MIR4796, MIR4446, CFAP44-AS1, CD200R1, CCDC80, BTLA, SPICE1, DRD3, TIGIT, USF3, ZDHHC23, GCSAM, NEPRO, GAP43, ZBTB20, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, LSAMP, CD200, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, ABHD10, CFAP44, CCDC191, ATG3, MIR567, MIR568, ZNF80, C3orf52, QTRT2, NAA50, PHLDB2, BOC) 0.349839969629021 36 0.126659833775603 1.14764363840048 3615 0.610095344650255 5 3 2 -6.88396075735318 LTS-030 chr3 116164346 116363133 198788 * LSAMP NA 0 NA 0.26 1 NA NA NA NA NA LTS-030 chr3 116363134 116569214 206081 * TUSC7 NA 0 NA 0.330572878229012 40 0.299321900301331 1 NA NA -5.81184895295671 LTS-030 chr3 116569215 122131412 5562198 * c(IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, IGSF11, C3orf30, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, CASR, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.382709360914334 79 0.0710925312806826 1.10896846574155 4027 0.628102592452595 5 3 2 -6.87847206774875 LTS-030 chr3 122131413 122131511 99 * WDR5B NA 0 NA 1.25 1 NA NA NA NA NA LTS-030 chr3 122131512 122296638 165127 * c(DTX3L, PARP15, KPNA1, WDR5B, PARP9) 0.356428448073241 20 0.112745638263165 1.37372379686894 540 0.684816885385154 6 4 2 -6.73311314478172 LTS-030 chr3 122296639 122356026 59388 * PARP15 0.469 1 NA 1.13686351694962 85 0.357951054507413 5 5 0 -5.76523746968155 LTS-030 chr3 122356027 122447976 91950 * PARP14 0.487 1 NA 1.54444065512686 184 0.559080321396973 7 7 0 -5.76464480604872 LTS-030 chr3 122447977 122447982 6 * PARP14 NA 0 NA 2.578 1 NA NA NA NA NA LTS-030 chr3 122447983 123687790 1239808 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, PARP14, CCDC14, HSPBAP1, DIRC2) 0.438029822154947 30 0.0438168208922492 1.85017416889216 1382 1.06978207254195 8 4 4 -6.73359065336807 LTS-030 chr3 123687791 123699240 11450 * ROPN1 NA 0 NA 0.650864701577794 84 0.437030891848955 2 NA NA -5.76466011016122 LTS-030 chr3 123699241 125690980 1991740 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.447087999019592 57 0.0682050388042976 1.6767313565177 1620 0.797714693660551 8 4 4 -6.75201514423575 LTS-030 chr3 125690981 125690988 8 * ROPN1B NA 0 NA 0.777 1 NA NA NA NA NA LTS-030 chr3 125690989 125725475 34487 * c(ROPN1B, SLC41A3) NA 0 NA 0.696826171737982 85 0.569544872845743 3 NA NA -5.76561284966704 LTS-030 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 1.491 1 NA NA NA NA NA LTS-030 chr3 125725550 128808365 3082816 * c(ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, C3orf22, DNAJB8, CHST13, KBTBD12, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, KIAA1257, EEFSEC, RPN1, TXNRD3NB, LOC653712, RAB7A, ZXDC, EFCC1, ABTB1, CHCHD6, RUVBL1, LOC90246) 0.440910642099245 28 0.0458536174451289 1.71778808057497 2798 0.792161606748735 8 4 4 -6.74130773541689 LTS-030 chr3 128808366 128840426 32061 * c(ISY1-RAB43, RAB43) NA 0 NA 1.06586628453931 67 0.562223619220991 4 NA NA -5.76465773715243 LTS-030 chr3 128840427 128846253 5827 * c(ISY1-RAB43, RAB43) NA 0 NA 3.021 1 NA NA NA NA NA LTS-030 chr3 128846254 129810997 964744 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, H1FX-AS1, IFT122, HMCES, ISY1, RHO, ALG1L2, SNORA7B, TRH, CNBP, MBD4, H1FX, EFCAB12) 0.445673675653974 21 0.102829956724682 1.86746295805035 1222 0.841168381503201 8 4 4 -6.73686506203685 LTS-030 chr3 129810998 130092449 281452 * c(COL6A5, ALG1L2, COL6A4P2, FAM86HP) NA 0 NA 1.151 1 NA NA NA NA NA LTS-030 chr3 130092450 130300650 208201 * c(COL6A6, COL6A5) 0.441646359405864 12 0.0553966414034992 1.33776871543244 408 0.584439336252747 6 3 3 -6.735582052979 LTS-030 chr3 130300651 130360515 59865 * COL6A6 0.368 1 NA 1.52846359714658 91 0.528006609090245 7 7 0 -5.76469306044774 LTS-030 chr3 130360516 132297908 1937393 * c(NPHP3-ACAD11, MIR5704, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, DNAJC13, ATP2C1, ASTE1, PIK3R4, LOC339874, ACPP, SNORA58, NEK11, ACAD11) 0.313208761881 18 0.0902944348635078 1.42363186308895 1399 0.686305002710544 7 5 2 -6.76724163160806 LTS-030 chr3 132297909 132298307 399 * c(NPHP3-ACAD11, ACAD11) NA 0 NA 0.439 1 NA NA NA NA NA LTS-030 chr3 132298308 132322184 23877 * c(NPHP3-ACAD11, ACKR4, ACAD11) NA 0 NA 0.340962486264103 55 0.15093111011319 1 NA NA -5.77951768719418 LTS-030 chr3 132322185 132323887 1703 * c(NPHP3-ACAD11, ACAD11) NA 0 NA 1.082 1 NA NA NA NA NA LTS-030 chr3 132323888 132394556 70669 * c(NPHP3-ACAD11, UBA5, ACAD11) 0.31040013956122 4 0.0371247895616931 1.56714272526572 136 0.574202983806424 7 5 2 -6.73432742395767 LTS-030 chr3 132394557 132394784 228 * c(NPHP3-ACAD11, UBA5) 0.489 1 NA 1.12298334413449 5 0.433811825564956 5 5 0 -5.7644133671452 LTS-030 chr3 132394785 133465252 1070468 * c(NPHP3-ACAD11, TOPBP1, NPHP3, NPHP3-AS1, CDV3, TMEM108, TF, UBA5, BFSP2) 0.399457205371253 7 0.067217840602314 1.33231143692497 661 0.641104344734237 5 3 2 -6.76711409095831 LTS-030 chr3 133465253 133930534 465282 * c(RAB6B, SRPRB, RYK, SLCO2A1, TF, C3orf36) 0.428145044095696 8 0.0497750295974655 0.933748109996872 523 0.374388271387967 4 2 2 -6.76892577694947 LTS-030 chr3 133930535 133941280 10746 * RYK NA 0 NA 1.596 1 NA NA NA NA NA LTS-030 chr3 133941281 134094282 153002 * c(AMOTL2, RYK) 0.477730286165597 5 0.0285884592099679 1.55786371442179 119 0.632537373699693 6 3 3 -7.68866007601686 LTS-030 chr3 134094283 142779376 8685094 * c(LOC100289361, LOC100507389, MIR4788, STAG1, GRK7, PISRT1, DZIP1L, EPHB1, MRAS, U2SURP, ZBTB38, GK5, ANAPC13, ARMC8, PCOLCE2, TRIM42, KY, PAQR9, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, ATP1B3, PCCB, A4GNT, DBR1, CLDN18, PIK3CB, PLS1, IL20RB, XRN1, ATR, MSL2, FAIM, SLC25A36, PPP2R3A, MRPS22, RASA2, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, TFDP2, TRPC1, PRR23A, CEP63, CEP70, SLC35G2, ESYT3, SOX14, NA NA NA NA NA NA NA NA NA LTS-030 SPSB4, PXYLP1, COPB2, RNF7) 0.443172368923183 71 0.0682984455606127 0.939854768252934 5746 0.476377434040629 4 2 2 -6.82274968748437 LTS-030 NA NA NA NA LTS-030 chr3 142779377 142839379 60003 * c(U2SURP, CHST2) NA 0 NA 2.104 1 NA NA NA NA NA LTS-030 chr3 142839380 145940063 3100684 * c(SLC9A9-AS1, C3orf58, SLC9A9, PLOD2, PLSCR4, CHST2) 0.370002008294503 13 0.0442255292325308 1.27030762766283 558 0.842573166074648 6 4 2 -6.81503129374032 LTS-030 chr3 145940064 146303750 363687 * c(PLSCR5, PLSCR1, PLSCR2, PLSCR4) 0.333 1 NA 1.14402370697768 119 0.496131334954767 5 5 0 -5.76647488904666 LTS-030 chr3 146303751 148614393 2310643 * c(CPA3, CPB1, AGTR1, PLSCR5, ZIC1, ZIC4) 0.327847884137718 4 0.0518394958823225 1.1287087751477 363 0.414008817380817 4 3 1 -7.02508810735908 LTS-030 chr3 148614394 148703550 89157 * CPA3 0.301 1 NA 0.630406921168477 53 0.249670822471537 2 2 0 -5.7666794784304 LTS-030 chr3 148703551 149485302 781752 * c(WWTR1-AS1, HLTF-AS1, TM4SF18, CP, WWTR1, GYG1, ANKUB1, TM4SF1, COMMD2, HLTF, TM4SF4, HPS3) 0.269815038221209 13 0.0471938175003507 1.66408799256538 989 0.78755240620373 8 6 2 -6.75335642140169 LTS-030 chr3 149485303 149700623 215321 * c(RNF13, ANKUB1, PFN2, LOC646903) 0.243 1 NA 1.02133986120447 186 0.577655569311642 4 4 0 -5.76458275101379 LTS-030 chr3 149700624 149700690 67 * character(0) NA 0 NA 1.62 1 NA NA NA NA NA LTS-030 chr3 149700691 150645544 944854 * c(CLRN1-AS1, ERICH6, SERP1, SELENOT, SIAH2, CLRN1, EIF2A, TSC22D2) 0.277966923062944 7 0.126197879387511 1.6363020309039 537 1.01294147633985 8 6 2 -6.73820100557027 LTS-030 chr3 150645545 151532066 886522 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, AADACP1, IGSF10, GPR171, AADACL2, P2RY13, GPR87, P2RY12, CLRN1, P2RY14) 0.315048836779693 6 0.0446336942977687 1.10993301287576 851 0.501866865773682 4 3 1 -6.82902222754975 LTS-030 chr3 151532067 151535123 3057 * c(MIR548H2, AADAC) NA 0 NA 1.83 1 NA NA NA NA NA LTS-030 chr3 151535124 167023738 15488615 * c(TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, AADAC, OTOL1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, SLITRK3, PLCH1, TIPARP, ARHGEF26, C3orf33, TRIM59, SCHIP1, LINC00880, GPR149, IL12A, KPNA4, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, MBNL1, MLF1, MME, P2RY1, NMD3, RSRC1, SUCNR1, LXN, CCNL1, IFT80, PTX3, BCHE, RAP2B, RARRES1, NA NA NA NA NA NA NA NA NA LTS-030 TMEM14EP, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, IQCJ, SSR3, SCARNA7, LINC00886, KCNAB1, VEPH1, ZBBX, ARL14, GFM1, B3GALNT1, GMPS, SLC33A1) 0.3122876761387 106 0.0686343149043533 1.41901066156109 5017 0.806659047341583 7 5 2 -6.93570601926301 LTS-030 NA NA NA NA LTS-030 chr3 167023739 167034814 11076 * ZBBX 0.471 1 NA 1.59849940698012 13 0.957382295101784 7 7 0 -5.76441016542959 LTS-030 chr3 167034815 167510537 475723 * c(PDCD10, WDR49, SERPINI1, SERPINI2, ZBBX) 0.408000503557352 10 0.0427312011948594 1.44600103280046 308 0.634081860210985 5 3 2 -6.7601600754497 LTS-030 chr3 167510538 167512406 1869 * SERPINI1 NA 0 NA 1.631 1 NA NA NA NA NA LTS-030 chr3 167512407 172534566 5022160 * c(LOC100128164, LRRC34, ECT2, RPL22L1, MECOM, TNIK, GHSR, GPR160, GOLIM4, LRRIQ4, SAMD7, TMEM212, CLDN11, SERPINI1, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, LINC01330, FNDC3B, SKIL, SLC2A2, MIR551B, MIR569, TERC, SEC62, LRRC31, PHC3, ACTRT3, TNFSF10, EGFEM1P) 0.452757013596871 50 0.0430865716095076 1.85527608199091 2918 1.03689639495131 8 4 4 -6.79910834996413 LTS-030 chr3 172534567 172835290 300724 * c(ECT2, SPATA16) 0.472230810175217 5 0.0168878654660676 1.40846347690528 103 0.440159599318979 6 3 3 -8.48188728832964 LTS-030 chr3 172835291 173997153 1161863 * c(NLGN1, SPATA16) 0.346 1 NA 1.0001662527942 72 0.537928839554174 4 4 0 -5.7644102012281 LTS-030 chr3 173997154 183854614 9857461 * c(LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, KCNMB2, DNAJC19, TTC14, HTR3C, HTR3D, NLGN1, MCF2L2, ATP11B, NAALADL2, LAMP3, KCNMB3, HTR3E, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, MAP6D1, FXR1, B3GNT5, ACTL6A, EIF2B5, USP13, KLHL6) 0.314580111267013 67 0.0675004430693869 1.37913351791556 4492 0.830239373232797 7 5 2 -6.92015481345376 LTS-030 chr3 183854615 183854699 85 * EIF2B5 NA 0 NA 1.739 1 NA NA NA NA NA LTS-030 chr3 183854700 186300594 2445895 * c(MIR1224, ALG3, IGF2BP2, AP2M1, CLCN2, FAM131A, CRYGS, DGKG, DVL3, EHHADH, EIF4G1, LIPH, EPHB3, ETV5, VPS8, LOC253573, C3orf70, EHHADH-AS1, NMRAL1P1, DNAJB11, POLR2H, TBCCD1, ABCF3, PSMD2, SENP2, MAGEF1, TRA2B, IGF2BP2-AS1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.313291252029658 56 0.0487252434642388 1.65695383595058 3690 0.801970905055897 7 5 2 -6.73601131634524 LTS-030 chr3 186300595 186301653 1059 * DNAJB11 NA 0 NA 1.4 1 NA NA NA NA NA LTS-030 chr3 186301654 193209222 6907569 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, CLDN16, RPL39L, TMEM207, RTP1, MB21D2, CCDC50, PYDC2, AHSG, EIF4A2, FGF12, UTS2B, FETUB, TPRG1, HRG, LPP-AS2, RTP2, OSTN, ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, DNAJB11, P3H2, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, ST6GAL1, SST, SNORA81, ATP13A4, MGC2889, TP63, CLDN1, ADIPOQ) 0.33218259698191 78 0.0557643405023468 1.44277908098723 3355 0.856580226570038 6 4 2 -6.84819218615528 LTS-030 chr3 193209223 193210704 1482 * ATP13A4 NA 0 NA 1.747 1 NA NA NA NA NA LTS-030 chr3 193210705 195345356 2134652 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.320854671373735 46 0.0456688828405445 1.66539942816005 1476 0.837222832394753 7 5 2 -6.75784038239021 LTS-030 chr3 195345357 195426484 81128 * c(MIR570, SDHAP2) 0.340453583768722 9 0.0987599502722525 1.24297843714119 84 0.795225175048179 6 4 2 -6.74957600367408 LTS-030 chr3 195426485 195447708 21224 * character(0) NA 0 NA 4.957 1 NA NA NA NA NA LTS-030 chr3 195447709 195515700 67992 * c(MUC20, MUC4) 0.329818563792473 31 0.0909625114793103 2.49290720500381 245 2.33253096675547 19 13 6 -6.73658801871228 LTS-030 chr3 195515701 197597144 2081444 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.322406821278119 57 0.0881681187727162 1.4872185733892 2842 0.722688574998441 7 5 2 -6.75438359862233 LTS-030 chr3 197597145 197770512 173368 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.34532914051262 357 0.595278924434214 6 NA NA -5.76489607964481 LTS-030 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.159 1 NA 0.888974472652436 17 0.289691963684755 3 3 0 -5.76498757199834 LTS-030 chr4 60336 3534282 3473947 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, DOK7, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NA NA NA NA NA NA NA NA NA LTS-030 NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.156801837409898 115 0.0623853737576874 0.664353465813898 6147 0.3726192936328 2 2 0 -6.901215749692 LTS-030 NA NA NA NA LTS-030 chr4 3534283 3589560 55278 * LINC00955 0.407 1 NA 0.68571610848478 3 0.407384748528137 2 2 0 -5.76807877086238 LTS-030 chr4 3589561 4190595 601035 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.420008302415871 22 0.0771711007299934 0.595960075881867 96 0.577702994531231 2 1 1 -6.7678228050799 LTS-030 chr4 4190596 4199634 9039 * OTOP1 0.087 1 NA 0.680187410882572 16 0.376905552935126 2 2 0 -5.76503000771046 LTS-030 chr4 4199635 4276536 76902 * c(OTOP1, LYAR, TMEM128) 0.193800850399696 11 0.0980528614389383 0.696955306104556 102 0.339099404503652 2 2 0 -6.79350093314742 LTS-030 chr4 4276537 4281200 4664 * LYAR NA 0 NA 0.152 1 NA NA NA NA NA LTS-030 chr4 4281201 7744547 3463347 * c(LOC100129931, MIR4274, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, EVC2, CRMP1, JAKMIP1, ZBTB49, EVC, MAN2B2, CCDC96, NSG1, LOC285484, MSX1, STX18, CYTL1, PPP2R2C, BLOC1S4, STK32B, LYAR, TBC1D14, SORCS2, S100P, FLJ36777, WFS1, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.177870429557505 42 0.0659326416914878 0.556412924232834 2549 0.260197986343333 2 2 0 -6.91677604124715 LTS-030 chr4 7744548 7760443 15896 * c(SORCS2, AFAP1, AFAP1-AS1) NA 0 NA 1.393 1 NA NA NA NA NA LTS-030 chr4 7760444 10118344 2357901 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SH3TC1, SLC2A9, AFAP1, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, ACOX3, ABLIM2, AFAP1-AS1, CPZ, HTRA3, WDR1) 0.14696554871283 50 0.0615934034368842 0.67283078705732 1326 0.337097520179148 2 2 0 -6.9487220927311 LTS-030 chr4 10118345 10118350 6 * WDR1 0.18 1 NA 0.267 1 NA NA NA NA NA LTS-030 chr4 10118351 11395987 1277637 * c(CLNK, MIR572, ZNF518B, WDR1) 0.236983621147495 13 0.0988176902049218 0.464516965123853 377 0.21507967485544 1 1 0 -7.11013632115857 LTS-030 chr4 11395988 30733146 19337159 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR5091, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, CPEB2, PACRGL, LINC01085, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, BOD1L1, FBXL5, FAM184B, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, CPEB2-AS1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, NKX3-2, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, NA NA NA NA NA NA NA NA NA LTS-030 MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, SLIT2, RAB28, CD38, HS3ST1, FGFBP1) 0.15925860079314 93 0.0688675528220443 0.589145851659718 5397 0.358946727277113 2 2 0 -6.76093947292052 LTS-030 NA NA NA NA LTS-030 chr4 30733147 30733179 33 * PCDH7 NA 0 NA 1.57 1 NA NA NA NA NA LTS-030 chr4 30733180 36068571 5335392 * c(ARAP2, PCDH7) 0.37 1 NA 0.909986265790242 77 0.425934185385778 4 4 0 -5.91743769603584 LTS-030 chr4 36068572 38590569 2521998 * c(MIR4801, PTTG2, ARAP2, TBC1D1, DTHD1, PGM2, C4orf19, NWD2, RELL1) 0.447528617086111 14 0.0335913548532821 0.859184893822982 954 0.490560699905646 4 2 2 -6.91620970776371 LTS-030 chr4 38590570 38590587 18 * character(0) NA 0 NA 1.102 1 NA NA NA NA NA LTS-030 chr4 38590588 38682149 91562 * c(KLF3, KLF3-AS1) NA 0 NA 0.404 1 NA NA NA NA NA LTS-030 chr4 38682150 38692160 10011 * KLF3 0.303 1 NA 0.515378228594883 41 0.193020263058622 2 2 0 -5.76803654279811 LTS-030 chr4 38692161 42628099 3935939 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, LIAS, SHISA3, KLB, SMIM14, LIMCH1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, BEND4, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, CHRNA9, N4BP2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.16479340201343 30 0.0773793759091656 0.556824118020118 3694 0.275690621787033 2 2 0 -6.89284118915671 LTS-030 chr4 42628100 42965224 337125 * c(ATP8A1, GRXCR1) NA 0 NA 0.525661593583847 55 0.177756306152846 2 NA NA -5.87113328539973 LTS-030 chr4 42965225 43022261 57037 * GRXCR1 NA 0 NA 0.909 1 NA NA NA NA NA LTS-030 chr4 43022262 44295839 1273578 * c(KCTD8, GRXCR1) 0.457 1 NA 0.715048410958046 45 0.194806034067456 3 3 0 -6.00489999322244 LTS-030 chr4 44295840 48178064 3882225 * c(CORIN, CNGA1, GNPDA2, NFXL1, NIPAL1, COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, KCTD8, COMMD8, ATP10D, GUF1, TEC, TXK) 0.432728905917432 65 0.0566538621468461 0.820265134338969 2018 0.395370129557954 4 2 2 -7.27394419251046 LTS-030 chr4 48178065 49064107 886043 * c(OCIAD2, SLC10A4, FRYL, ZAR1, OCIAD1, SLAIN2, TEC, CWH43) NA 0 NA 0.883225330073135 799 0.461918547777882 3 NA NA -5.78908356848088 LTS-030 chr4 52709193 52714511 5319 * DCUN1D4 0.447 1 NA 2.43083905289478 17 1.40941371050268 11 11 0 -5.76441032981729 LTS-030 chr4 52714512 68605627 15891116 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NA NA NA NA NA NA NA NA NA LTS-030 NOA1, HOPX, LNX1, CLOCK, CEP135) 0.429205206664207 102 0.0702151815082055 0.954956957235261 4453 0.487294918243969 4 2 2 -6.82794500652873 LTS-030 NA NA NA NA LTS-030 chr4 68605628 68906584 300957 * c(GNRHR, TMPRSS11A, UBA6-AS1, TMPRSS11GP, TMPRSS11D) 0.402923471579173 8 0.161034157867205 0.693170466799308 270 0.330960881787112 3 2 1 -6.78639212452119 LTS-030 chr4 68906585 68908146 1562 * UBA6-AS1 0.444 1 NA 0.305813962066198 40 0.165907865611594 1 1 0 -5.76678048170013 LTS-030 chr4 68908147 68918917 10771 * c(TMPRSS11F, UBA6-AS1) NA 0 NA 0.632 1 NA NA NA NA NA LTS-030 chr4 68918918 71065944 2147027 * c(FTLP10, CSN1S2BP, UGT2B11, UGT2A1, TMPRSS11B, CSN1S1, CSN2, SULT1B1, CSN1S2AP, HTN1, HTN3, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, UGT2B28, ODAM, UBA6-AS1, LOC550113, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17) 0.439753891506305 37 0.0508940193068027 0.818059321538221 1149 0.528192465470964 4 2 2 -6.91398389620594 LTS-030 chr4 71065945 71462828 396884 * c(SMR3B, CSN3, AMBN, FDCSP, SMR3A, AMTN, MUC7, ODAM, OPRPN, CABS1) 0.447183288116043 20 0.0577676607764149 0.590070181319331 289 0.307344691581754 2 1 1 -6.74667067420055 LTS-030 chr4 71462829 71464003 1175 * AMBN NA 0 NA 1.01 1 NA NA NA NA NA LTS-030 chr4 71464004 78639219 7175216 * c(FAM47E, MIR4450, FAM47E-STBD1, ENAM, CXCL13, NPFFR2, PPBPP2, CCNI, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, CNOT6L, EPGN, AMBN, PARM1, RCHY1, ANKRD17, GC, NAAA, COX18, CXCL1, CXCL2, CXCL3, GRSF1, CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, ART3, CXCL9, MTHFD2L, LOC441025, PF4, PF4V1, NUP54, PPEF2, PPBP, SDAD1, SEPT11, UTP3, SHROOM3, CXCL6, CXCL11, CXCL5, BTC, LOC728040, NA NA NA NA NA NA NA NA NA LTS-030 USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.439674195019641 94 0.0690491918456121 0.927075175187456 5259 0.502853172944213 4 2 2 -6.82922844651636 LTS-030 NA NA NA NA LTS-030 chr4 78639220 78639357 138 * CNOT6L NA 0 NA 0.594 1 NA NA NA NA NA LTS-030 chr4 78639358 78641843 2486 * CNOT6L NA 0 NA 0.424058554327611 61 0.17187484485835 1 NA NA -5.76460986870545 LTS-030 chr4 78641844 78647240 5397 * CNOT6L NA 0 NA 1.362 1 NA NA NA NA NA LTS-030 chr4 78647241 82372168 3724928 * c(LINC01094, LINC01088, LINC00989, PCAT4, ANTXR2, PAQR3, RASGEF1B, FGF5, CNOT6L, C4orf22, GK2, ANXA3, BMP2K, PRKG2, PRDM8, MRPL1, BMP3, FRAS1, NAA11) 0.42660218335504 53 0.0645878976023439 0.841002249392588 1946 0.423315255709063 4 2 2 -7.10623363936627 LTS-030 chr4 82372169 86896229 4524061 * c(THAP9-AS1, MIR4451, CDS1, HPSE, HELQ, LIN54, RASGEF1B, SEC31A, WDFY3, COQ2, HNRNPD, WDFY3-AS2, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, PLAC8, ENOPH1, MIR575, THAP9, SCD5, ARHGAP24, FAM175A, GPAT3, HNRNPDL) 0.441034496612096 37 0.0448689449644431 1.02293426839211 2194 0.501257396551895 4 2 2 -6.74028882934115 LTS-030 chr4 86896230 86898701 2472 * ARHGAP24 NA 0 NA 0.727 1 NA NA NA NA NA LTS-030 chr4 86898702 95129654 8230953 * c(LOC100506746, MIR5705, PYURF, FAM13A, C4orf36, PPM1K, TIGD2, DMP1, DSPP, MMRN1, NAP1L5, FAM13A-AS1, GPRIN3, GRID2, IBSP, SLC10A6, HSD17B13, CCSER1, AFF1, ATOH1, HSD17B11, HERC5, PKD2, NUDT9, HERC6, MAPK10, SMARCAD1, MEPE, KLHL8, PTPN13, SNCA-AS1, SNCA, SPP1, ARHGAP24, SPARCL1, HERC3, ABCG2) 0.43158260744422 86 0.0465950934753662 0.87505652291318 3513 0.598828629542371 4 2 2 -6.98256945362726 LTS-030 chr4 95129655 99984002 4854348 * c(MIR3684, TSPAN5, STPG2-AS1, PDLIM5, EIF4E, METAP1, HPGDS, STPG2, PDHA2, SMARCAD1, RAP1GDS1, BMPR1B, UNC5C) 0.43621805984081 21 0.0707555483269518 1.03640744887846 1541 0.762380493767179 4 2 2 -6.74013359994428 LTS-030 chr4 99984003 99992040 8038 * character(0) NA 0 NA 0.772 1 NA NA NA NA NA LTS-030 chr4 99992041 100434344 442304 * c(LOC100507053, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, PCNAP1, C4orf17) 0.449225695942985 13 0.0410190699865819 0.690867158004184 521 0.400953506608726 2 1 1 -6.80630696762249 LTS-030 chr4 100434345 100434418 74 * C4orf17 NA 0 NA 0.792 1 NA NA NA NA NA LTS-030 chr4 100434419 119399800 18965382 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, ENPEP, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, ANK2, H2AFZ, HADH, CFI, LRIT3, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RPL34, NEUROG2, SLC39A8, NA NA NA NA NA NA NA NA NA LTS-030 LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK) 0.437602770368355 102 0.0459612364421393 0.927017153503265 7680 0.522483258841016 4 2 2 -6.96365713705931 LTS-030 NA NA NA NA LTS-030 chr4 119399801 119399899 99 * character(0) NA 0 NA 0.654 1 NA NA NA NA NA LTS-030 chr4 119399900 119477080 77181 * CEP170P1 0.448743228592072 2 0.0332340187157677 0.494109173573178 162 0.262658340003407 2 1 1 -6.81267099995687 LTS-030 chr4 119477081 121957276 2480196 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, PDE5A, SEC24D) 0.449626495722638 62 0.0428728149935132 0.944492810186082 1309 0.424541413278283 4 2 2 -6.79898649524119 LTS-030 chr4 121957277 126413635 4456359 * c(PP12613, SPRY1, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, FGF2, LINC01091, ANXA5, IL2, EXOSC9, BBS7, ANKRD50, IL21, TRPC3, CETN4P, NDNF, FAT4, TNIP3, QRFPR, KIAA1109, CCNA2) 0.444237374335486 22 0.0462051701535418 0.800582717008477 2170 0.681921192926852 4 2 2 -7.01357758948273 LTS-030 chr4 126413636 126413734 99 * FAT4 NA 0 NA 1.046 1 NA NA NA NA NA LTS-030 chr4 126413735 146046333 19632599 * c(SCOC-AS1, MIR2054, LINC00499, ANAPC10, PGRMC2, CLGN, PLK4, SCLT1, C4orf33, PABPC4L, MGAT4D, FREM3, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, GYPA, GYPB, GYPE, IL15, MGST2, GUSBP5, NDUFC1, PCDH18, LARP1B, MAML3, RNF150, PCDH10, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, HHIP-AS1, UCP1, FAT4, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, USP38, SMARCA5, MGARP, NA NA NA NA NA NA NA NA NA LTS-030 INPP4B) 0.437206671291517 39 0.0603365504916893 0.939742988772552 5130 0.470921296496727 4 2 2 -6.93181969958469 LTS-030 NA NA NA NA LTS-030 chr4 146046334 146048544 2211 * ABCE1 NA 0 NA 0.71 1 NA NA NA NA NA LTS-030 chr4 146048545 146059305 10761 * c(OTUD4, ABCE1) NA 0 NA 0.590839705664431 140 0.207543053892224 2 NA NA -5.76443699459226 LTS-030 chr4 146059306 153271246 7211941 * c(LINC01095, MIR4799, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, PRSS48, SMAD1, NR3C2, GATB, POU4F2, OTUD4, FBXW7, TMEM184C, RPS3A, C4orf51, FAM160A1, ARHGAP10, TTC29, SLC10A7, SNORD73A, PRMT9, LRBA) 0.456910946581529 30 0.046486693189322 1.0065484192212 2507 0.475774155785424 4 2 2 -6.82513593383256 LTS-030 chr4 153271247 153273648 2402 * FBXW7 NA 0 NA 0.588 1 NA NA NA NA NA LTS-030 chr4 153273649 153881835 608187 * c(MIR3140, TIGD4, TMEM154, ARFIP1, DKFZP434I0714, FBXW7, FHDC1) 0.410332021382156 6 0.0543485663717698 0.727359900104678 420 0.452690585902095 2 1 1 -6.95814595831039 LTS-030 chr4 153881836 153900852 19017 * FHDC1 0 1 NA 0.900067283976773 133 0.610428246487886 4 4 0 -5.76474953780177 LTS-030 chr4 153900853 154125853 225001 * TRIM2 NA 0 NA 0.917347508005367 19 0.364350347109203 4 NA NA -5.77196900398574 LTS-030 chr4 154125854 154178612 52759 * TRIM2 NA 0 NA 0.532 1 NA NA NA NA NA LTS-030 chr4 154178613 169911432 15732820 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, ANXA10, KLHL2, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, PALLD, KIAA0922, TRIM2, ANP32C, GK3P, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, LOC340017, TRIM61, NPY1R, NPY2R, NPY5R, SPOCK3, FAM198B, ASIC5, PLRG1, DCHS2, PPID, MARCH1, TMEM144, TMA16, DDX60, PDGFC, FSTL5, FNIP2, RXFP1, MSMO1, SFRP2, MIR578, TDO2, NA NA NA NA NA NA NA NA NA LTS-030 TLL1, TLR2, MAP9, MND1, TKTL2, CBR4, DDX60L, LRAT, NAF1, RAPGEF2) 0.156254159158982 109 0.0710626407662574 0.54290674061151 5768 0.329076815562283 2 2 0 -7.48044547352825 LTS-030 NA NA NA NA LTS-030 chr4 169911433 169922375 10943 * CBR4 NA 0 NA 2.149 1 NA NA NA NA NA LTS-030 chr4 169922376 170015945 93570 * c(SH3RF1, CBR4) NA 0 NA 1.1582956640206 56 0.549514526886906 5 NA NA -5.76464934988899 LTS-030 chr4 170015946 184432113 14416168 * c(CLDN24, MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, SCRG1, WDR17, CLCN3, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, ING2, LOC389247, FAM92A1P2, GALNTL6, NEK1, AADAT, GALNT7, CLDN22, HPF1, NEIL3, CDKN2AIP, TENM3, SH3RF1, SPCS3, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, SAP30, LOC90768, HAND2, MFAP3L) 0.165587390993426 58 0.073922377169163 0.527205558926178 3285 0.356244210926855 2 2 0 -7.67399469026314 LTS-030 chr4 184432114 184562512 130399 * c(RWDD4, ING2) 0.195115346673459 3 0.0317962261911693 0.213729860426603 39 0.104744635168066 1 1 0 -10.017315185217 LTS-030 chr4 184562513 184562527 15 * RWDD4 NA 0 NA 0.33 1 NA NA NA NA NA LTS-030 chr4 184562528 190981533 6419006 * c(MIR3945, LINC01093, ZFP42, ENPP6, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, FRG1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, SLC25A4, LOC339975, TRIML1, ANKRD37, IRF2, KLKB1, HELT, LINC01060, C4orf47, MTNR1A, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, FLJ38576, TLR3, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.187782016282343 73 0.103017033214998 0.555044091395799 3084 0.296379075658128 2 2 0 -7.00458619578919 LTS-030 chr4 190981534 190981567 34 * character(0) NA 0 NA 0.655688467126963 3 0.279437530287779 2 NA NA -5.76441222312188 LTS-030 chr5 140347 163260 22914 * PLEKHG4B 0.469 1 NA 0.949359574653805 75 0.508171905368061 4 4 0 -5.76455390446668 LTS-030 chr5 163261 10266366 10103106 * c(SNORD123, PDCD6, MIR4277, MIR4278, MIR4458HG, SNHG18, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4636, MIR4456, MIR4635, LOC100996325, SLC12A7, ADCY2, PAPD7, TPPP, EXOC3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, FAM173B, PLEKHG4B, C5orf38, IRX2, ADAMTS16, CCT5, ICE1, LINC01018, PP7080, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, LRRC14B, FLJ33360, LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, NSUN2, CEP72, NA NA NA NA NA NA NA NA NA LTS-030 AHRR, SDHA, MRPL36, SLC6A3, SLC9A3, BRD9, SRD5A1, TERT, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, MED10, NKD2, SEMA5A, TRIP13) 0.421729465578949 139 0.0833588885849633 0.929975512358712 4637 0.477594372880946 4 2 2 -6.8945108104064 LTS-030 NA NA NA NA LTS-030 chr5 10266367 10680156 413790 * c(ROPN1L-AS1, MARCH6, CMBL, DAP, CCT5, ANKRD33B, ROPN1L) 0.402602169636852 2 0.191625937701554 1.15121960310686 328 0.758166979000367 5 3 2 -6.73490390859994 LTS-030 chr5 10680157 13917469 3237313 * c(CTNND2, DAP, DNAH5, LINC01194) 0.428101370491707 7 0.0475008771848829 0.769202746953863 652 0.31719045366755 3 2 1 -7.46612690517451 LTS-030 chr5 13917470 13919214 1745 * DNAH5 NA 0 NA 1.509 1 NA NA NA NA NA LTS-030 chr5 13919215 19473397 5554183 * c(LOC100130744, MIR4637, CDH18, BASP1, DNAH5, FBXL7, LOC285696, LOC401177, MARCH11, MYO10, FAM134B, FAM105A, ANKH, TRIO, OTULIN, ZNF622) 0.430252495083018 24 0.100075614528158 1.03413531224179 1608 0.460610516307007 4 2 2 -6.75488528769768 LTS-030 chr5 19473398 31313620 11840223 * c(CDH6, CDH9, CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.394091597174837 3 0.0946907246425611 0.765514912109254 542 0.369976028473144 3 2 1 -6.85722898828572 LTS-030 chr5 31313621 31316226 2606 * CDH6 NA 0 NA 1.549 1 NA NA NA NA NA LTS-030 chr5 31316227 34897025 3580799 * c(CDH6, MIR4279, SUB1, C1QTNF3, TTC23L, PDZD2, AMACR, RAI14, DROSHA, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, GOLPH3, TARS, ADAMTS12) 0.441624125275114 34 0.0554830754172298 0.966605441570799 2379 0.520491604386255 4 2 2 -6.74390075913991 LTS-030 chr5 34897026 34902542 5517 * TTC23L NA 0 NA 2.278 1 NA NA NA NA NA LTS-030 chr5 34902543 34956623 54081 * c(DNAJC21, BRIX1, RAD1) 0.449968761513454 2 0.0247487373415292 1.37760883038689 264 0.707183605521525 6 3 3 -6.85622546802596 LTS-030 chr5 34956624 36105337 1148714 * c(UGT3A1, CAPSL, DNAJC21, UGT3A2, IL7R, PRLR, AGXT2, SPEF2, LMBRD2) 0.424737745598154 53 0.0815174569708934 0.77918424318314 1254 0.359057788422151 3 2 1 -6.96510637751808 LTS-030 chr5 36105338 36108566 3229 * LMBRD2 NA 0 NA 0.963 1 NA NA NA NA NA LTS-030 chr5 36108567 44809162 8700596 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MRPS30, MROH2B, EGFLAM, NADK2, LOC153684, DAB2, NIM1K, RANBP3L, FGF10, NNT, TTC33, RICTOR, FYB, NIPBL, FBXO4, GDNF, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, WDR70, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, NIPBL-AS1, LOC648987, SKP2, SLC1A3, C5orf42, MIR580, NA NA NA NA NA NA NA NA NA LTS-030 C6, C7, C9, ZNF131, CARD6, OSMR, LMBRD2, NUP155) 0.438017271734746 100 0.0444173264491334 0.932156127733536 5277 0.541712261345314 4 2 2 -6.81969143999387 LTS-030 NA NA NA NA LTS-030 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.00914297991876 155 0.408171443069672 4 NA NA -5.76467476924465 LTS-030 chr5 49692017 49724095 32079 * EMB NA 0 NA 0.486065957709124 97 0.213725851211184 1 NA NA -5.78111342424047 LTS-030 chr5 49724096 49736893 12798 * EMB NA 0 NA 1.1 1 NA NA NA NA NA LTS-030 chr5 49736894 51376825 1639932 * c(EMB, ISL1, LOC642366, PARP8) 0.495 1 NA 0.757913365252658 323 0.386957463046039 3 3 0 -5.78301631623478 LTS-030 chr5 51376826 52216217 839392 * c(ITGA1, PELO) 0.443940522590259 10 0.0549237855780373 0.988218007420612 178 0.454986436255424 4 2 2 -6.73895620826837 LTS-030 chr5 52216218 52216335 118 * ITGA1 NA 0 NA 0.832143327834128 3 0.0248260615751539 3 NA NA -5.76459366199919 LTS-030 chr5 52216336 52218501 2166 * ITGA1 NA 0 NA 0.368 1 NA NA NA NA NA LTS-030 chr5 52218502 52229745 11244 * ITGA1 0.159 1 NA 0.441648766890898 31 0.139161390022945 1 1 0 -5.76814296774659 LTS-030 chr5 52229746 58489446 6259701 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PDE4D, DHX29, DDX4, ARL15, MIR449A, GPBP1, MIR449B, MIR581, ANKRD55, PLPP1, HSPB3) 0.173141369386195 59 0.0553149158742604 0.533085098435088 3365 0.298024618475874 2 2 0 -7.269015909644 LTS-030 chr5 58489447 58511557 22111 * PDE4D NA 0 NA 0.807 1 NA NA NA NA NA LTS-030 chr5 58511558 68740198 10228641 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, ERCC8, SREK1, MARVELD2, CCDC125, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, TAF9, ELOVL7, TRAPPC13, CCNB1, NDUFAF2, MRPS36) 0.160650548035157 80 0.075636739072149 0.590672141393225 4335 0.348398441250186 2 2 0 -6.7444690116459 LTS-030 chr5 68740199 68799972 59774 * OCLN NA 0 NA 0.301 1 NA NA NA NA NA LTS-030 chr5 68799973 69373278 573306 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.414270283232292 96 0.275635652716127 1 NA NA -5.77148570120511 LTS-030 chr5 69373279 70388996 1015718 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.232570891488726 95 0.425122230496433 0 NA NA -5.85261195515936 LTS-030 chr5 70388997 70751403 362407 * c(GUSBP9, NAIP, PMCHL2) NA 0 NA 1.523 1 NA NA NA NA NA LTS-030 chr5 70751404 78952691 8201288 * c(NCRUPAR, MIR4804, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, JMY, TMEM171, TMEM174, POC5, CRHBP, PAPD4, ZNF366, S100Z, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, BHMT2, ANKRD31, FAM169A, DMGDH, HEXB, HMGCR, TNPO1, ARSB, MAP1B, GCNT4, POLK, AGGF1, WDR41, BDP1, ANKRA2, BHMT, MCCC2, ARHGEF28, SNORA47, BTF3, TBCA, ZBED3-AS1, ANKDD1B, PTCD2, UTP15, ZBED3, GFM2, ENC1, AP3B1, PDE8B, HOMER1, SCAMP1, NA NA NA NA NA NA NA NA NA LTS-030 CARTPT) 0.158813857234472 90 0.0697881268318017 0.579426287169146 5513 0.579815452978139 2 2 0 -6.75357169428951 LTS-030 NA NA NA NA LTS-030 chr5 78952692 79024716 72025 * c(PAPD4, CMYA5) NA 0 NA 0.686526879221251 56 0.246605973505978 2 NA NA -5.77766227317608 LTS-030 chr5 79024717 79024722 6 * CMYA5 0.148 1 NA 0.113 1 NA NA NA NA NA LTS-030 chr5 79024723 79041365 16643 * CMYA5 0.224112466888827 24 0.0576482964792241 0.338502412230065 247 0.116734839463112 1 1 0 -6.85475445014499 LTS-030 chr5 79041366 79042871 1506 * CMYA5 NA 0 NA 0.643 1 NA NA NA NA NA LTS-030 chr5 79042872 90159695 11116824 * c(CKMT2-AS1, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR3977, EDIL3, POLR3G, CETN3, CKMT2, LYSMD3, ACOT12, COX7C, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, FAM151B, DHFR, CMYA5, SSBP2, SERINC5, RNU5E-1, NBPF22P, ANKRD34B, MTX3, MIR9-2, MEF2C, CRSP8P, MSH3, RASA1, RASGRF2, RPS23, LOC644936, LINC00461, SCARNA18, THBS4, XRCC4, ATG10, ADGRV1, ZCCHC9, SPZ1, CCNH, ATP6AP1L, ZFYVE16) 0.164368874354146 68 0.0803624963307245 0.539657109445122 4128 0.315702502532542 2 2 0 -7.38147304453301 LTS-030 chr5 90159696 90671015 511320 * c(ARRDC3, ADGRV1) NA 0 NA 0.62986935894632 117 0.304548183511518 2 NA NA -5.77286078926501 LTS-030 chr5 90671016 90671300 285 * ARRDC3 NA 0 NA 1 1 NA NA NA NA NA LTS-030 chr5 90671301 92919252 2247952 * c(ARRDC3-AS1, NR2F1-AS1, ARRDC3, NR2F1) 0.365 1 NA 0.951446695162143 24 0.598484570224748 4 4 0 -5.77372381507264 LTS-030 chr5 92919253 93300317 381065 * c(MIR2277, POU5F2, NR2F1, FAM172A) NA 0 NA 1.1205931727933 198 0.757352816948681 5 NA NA -5.76630526290449 LTS-030 chr5 93300318 93386349 86032 * FAM172A NA 0 NA 0.694 1 NA NA NA NA NA LTS-030 chr5 93386350 95767897 2381548 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, PCSK1, MIR583, MCTP1, SPATA9, FAM172A, SLF1, TTC37) 0.448396452911876 20 0.0396581112696216 0.780232965150308 1640 0.37713015620498 4 2 2 -7.33166413122187 LTS-030 chr5 95767898 95768613 716 * PCSK1 NA 0 NA 1.433 1 NA NA NA NA NA LTS-030 chr5 95768614 96367091 598478 * c(LNPEP, PCSK1, ERAP1, ERAP2, CAST) 0.408482205393111 19 0.0712157992195519 1.04408001089169 751 0.500988233617132 5 3 2 -6.76148122353704 LTS-030 chr5 96367092 96430724 63633 * LIX1 NA 0 NA 1.74040578091978 185 0.722789095894878 8 NA NA -5.76449964794919 LTS-030 chr5 96430725 96432502 1778 * LIX1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-030 chr5 96432503 140166025 43733523 * c(SRA1, VTRNA2-1, MIR874, KIAA1024L, LOC100133050, LOC100289230, LOC100289673, MIR1289-2, TMED7-TICAM2, MIR3936, MIR3661, LINC01024, STARD4-AS1, LOC100505841, MIR4633, MIR4461, MIR4460, LINC01023, NREP-AS1, C5orf66, RAD50, KIF20A, APBB3, CDO1, SEC24A, BRD8, HNRNPA0, CHD1, KIF3A, SLC35A4, EPB41L4A-AS1, MARCH3, LEAP2, AP3S1, SLCO6A1, PRRC1, ZNF474, STARD4, WDR36, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, CSNK1G3, NA NA NA NA NA NA NA NA NA LTS-030 CTNNA1, MGC32805, CEP120, SLC25A48, SRFBP1, ZMAT2, CCDC112, DMXL1, DCP2, LIX1, ADAMTS19, HBEGF, EFNA5, EGR1, SPATA24, DNAJC18, LVRN, ETF1, FBN2, FER, FSTL4, SEPT8, PPIP5K2, ACSL6, JADE2, HARS2, TNFAIP8, LRRTM2, FBXL21, KLHL3, GDF9, GFRA3, SNORD63, SNORA74A, PKD2L2, UQCRQ, AFF4, DTWD2, RGMB, SLC27A6, SNX24, HARS, HINT1, APC, HSD17B4, HSPA4, HSPA9, CHSY3, TMEM173, FAM170A, C5orf66-AS2, LOC340074, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 FAM174A, CATSPER3, SLCO4C1, TICAM2, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, KCNN2, TEX43, LOC389332, PROB1, LECT2, LMNB1, C5orf63, LOX, ANKHD1-EIF4EBP3, SMAD5, MAN2A1, MCC, C5orf56, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, ALDH7A1, RGMB-AS1, PAM, TMED7, ISOC1, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, PRR16, COMMD10, CXXC5, RAPGEF6, KDM3B, PHAX, PFDN1, PGGT1B, PITX1, EPB41L4A-AS2, PPIC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 ZCCHC10, GIN1, WDR55, ANKHD1, PPP2CA, LOC553103, TMCO6, TRIM36, RIOK2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, FEM1C, C5orf15, CDC42SE2, TRPC7, ZNF608, SEMA6A, PURA, CTXN3, EPB41L4A, ECSCR, TMEM232, SIL1, ARL14EPL, LINC01184, CCNI2, FBXL17, YTHDC2, SKP1, SNORA13, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, SPOCK1, SRP19, TCF7, TGFBI, SNHG4, LINC00992, MEIKIN, UBE2B, UBE2D2, VDAC1, WNT8A, ST8SIA4, REEP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 TXNDC15, CAMK4, CAMLG, NUDT12, SLC4A9, NME5, TSSK1B, PCBD2, PSD2, CYSTM1, MEGF10, TSLP, PDLIM4, EIF4EBP3, CDC23, P4HA2, C5orf30, LYRM7, SLC25A46, CDKN2AIPNL, ATG12, CD14, NREP, PRDM6, RAB9BP1, FTMT, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, SNCAIP, FNIP1, MATR3, PJA2, DDX46, CDC25C, SLC23A1) 0.43557107407567 323 0.0730298844135778 0.965057601726319 20346 0.52840635782531 4 2 2 -6.85068069015911 LTS-030 NA NA NA NA LTS-030 chr5 140166026 140166220 195 * PCDHA1 NA 0 NA 0.797 1 NA NA NA NA NA LTS-030 chr5 140166221 140553623 387403 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.437782479466101 24 0.0603756207397501 0.688980990567439 1179 0.358098599450696 2 1 1 -6.76861083911757 LTS-030 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.221 1 NA NA NA NA NA LTS-030 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.462509744226933 2 0.0226274169979695 0.206635089390705 63 0.143404763753793 0 0 0 -7.33616583438012 LTS-030 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.588 1 NA NA NA NA NA LTS-030 chr5 140559822 140871386 311565 * c(PCDHGA12, PCDHGC3, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.430674783208632 28 0.0563569031184338 0.70798207284491 1646 0.411821931363286 2 1 1 -6.77575060401019 LTS-030 chr5 140871387 145890131 5018745 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, TCERG1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, KCTD16, HMHB1, GRXCR2, ARAP3, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, NA NA NA NA NA NA NA NA NA LTS-030 HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.452439882291378 43 0.0459655126148358 1.00126279186589 2946 0.44981332235782 4 2 2 -6.78665853969013 LTS-030 NA NA NA NA LTS-030 chr5 145890132 148408314 2518183 * c(PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, SPINK13, JAKMIP2-AS1, ADRB2, DPYSL3, STK32A, HTR4, C5orf46, SPINK6, SPINK14, PPP2R2B, SPINK9, SPINK1, SH3TC2, FBXO38, SPINK7, JAKMIP2) 0.429203666433555 69 0.0696889263948232 0.812909950871333 1610 0.434454812704023 4 2 2 -7.06917586995155 LTS-030 chr5 148408315 148411024 2710 * SH3TC2 NA 0 NA 1.061 1 NA NA NA NA NA LTS-030 chr5 148411025 150110337 1699313 * c(CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, SLC26A2, ABLIM3, HMGXB3, IL17B, NDST1, ARSI, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, MYOZ3, CD74) 0.431793739708172 81 0.0669421391949794 1.0574338441407 3474 1.06722975921998 4 2 2 -6.74208770689634 LTS-030 chr5 150110338 154393656 4283319 * c(MIR3141, LOC100652758, G3BP1, TNIP1, FAXDC2, FAM114A2, ZNF300P1, SLC36A2, SLC36A1, FAT2, LARP1, GEMIN5, CCDC69, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, IRGM, SAP30L-AS1, MFAP3, ATOX1, DCTN4, GALNT10, NMUR2, SPARC, SAP30L, SMIM3, ZNF300, CNOT8, HAND1) 0.452095809409008 70 0.0361851261437247 0.935220679080551 3382 0.474068682187635 4 2 2 -6.8657394951735 LTS-030 chr5 154393657 154393787 131 * KIF4B NA 0 NA 0.448 1 NA NA NA NA NA LTS-030 chr5 154393788 156635946 2242159 * c(PPP1R2P3, FAM71B, HAVCR1, KIF4B, ITK, SGCD, HAVCR2, TIMD4, MED7) 0.458754495953099 9 0.0359853365198166 0.681053636394752 624 0.287205634786266 2 1 1 -7.17358268357446 LTS-030 chr5 156635947 160717556 4081610 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, ATP10B, GABRB2, CYFIP2, LOC285626, LOC285627, LOC285629, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, TTC1, CCNJL, ADAM19, PTTG1, CLINT1) 0.431932933821563 51 0.0882328381357542 0.921932965130588 2443 0.486201246016118 4 2 2 -6.80417061846795 LTS-030 chr5 160717557 162870884 2153328 * c(GABRA1, GABRA6, GABRB2, GABRG2, CCNG1) 0.344616113556422 9 0.140022319649404 0.710066397115059 480 0.455325434745982 3 2 1 -6.84462949383002 LTS-030 chr5 162870885 168727622 5856738 * c(MIR103B1, NUDCD2, WWC1, MAT2B, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, MIR585, PANK3, CCNG1) 0.421025643252941 23 0.0990105595837682 1.05987330686168 1316 0.527635803329196 4 2 2 -6.79433754792175 LTS-030 chr5 168727623 169015342 287720 * c(SPDL1, SLIT3) NA 0 NA 0.397 1 NA NA NA NA NA LTS-030 chr5 169015343 170738659 1723317 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, GABRP, LINC01366, TLX3, KCNIP1, KCNMB1, LCP2, SPDL1, RANBP17) 0.432147391449024 18 0.0515917863453152 0.792993512076018 1141 0.346663011378975 4 2 2 -7.17296555741789 LTS-030 chr5 170738660 170738797 138 * TLX3 NA 0 NA 1.769 1 NA NA NA NA NA LTS-030 chr5 170738798 173426886 2688089 * c(LOC100268168, MIR3912, C5orf47, NKX2-5, CREBRF, DUSP1, FBXW11, EFCAB9, SH3PXD2B, LOC285593, TLX3, NPM1, RPL26L1, NEURL1B, ERGIC1, BNIP1, SNORA74B, STK10, CPEB4, STC2, FGF18, ATP6V0E1, BOD1, UBTD2) 0.431501927963499 28 0.0926923282956455 1.08087519271898 1983 0.600589631397538 4 2 2 -6.76350801802324 LTS-030 chr5 173426887 173428135 1249 * C5orf47 NA 0 NA 0.623 1 NA NA NA NA NA LTS-030 chr5 173428136 175386679 1958544 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.458630466689934 11 0.0729147696722937 0.852377912280413 513 0.369811642663236 4 2 2 -6.98937275020762 LTS-030 chr5 175386680 175394264 7585 * THOC3 NA 0 NA 0.278884093838133 80 0.262926494697518 0 NA NA -5.77221316076575 LTS-030 chr5 175394265 175395032 768 * THOC3 NA 0 NA 4.666 1 NA NA NA NA NA LTS-030 chr5 175395033 175723359 328327 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) 0.375 1 NA 0.686456280497521 136 0.679675673929872 2 2 0 -5.77235795934559 LTS-030 chr5 175723360 175740061 16702 * SIMC1 NA 0 NA 0.793 1 NA NA NA NA NA LTS-030 chr5 175740062 176734842 994781 * c(MIR4281, GPRIN1, CLTB, HIGD2A, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, HK3, SIMC1, NOP16, UIMC1, RAB24, CDHR2, KIAA1191, NSD1, SNCB, MXD3, UNC5A) 0.447270125526301 73 0.0462549310382978 0.96831954676145 2133 0.446744834710493 4 2 2 -6.75694603274198 LTS-030 chr5 176734843 176734846 4 * MXD3 NA 0 NA 1.217 1 NA NA NA NA NA LTS-030 chr5 176734847 176958397 223551 * c(RGS14, LMAN2, DBN1, F12, GRK6, PRR7-AS1, PFN3, DDX41, FAM193B, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.438986850428476 16 0.0386117426007512 1.15741570859465 944 0.618736687984732 4 2 2 -6.74055673864691 LTS-030 chr5 176958398 177032050 73653 * c(B4GALT7, FAM193B, TMED9) 0.413 1 NA 1.1551965516925 116 0.533897354654756 5 5 0 -5.76464051783396 LTS-030 chr5 177032051 177099262 67212 * c(B4GALT7, LOC202181) NA 0 NA 0.909879193017886 71 0.391645463929431 4 NA NA -5.76675425198434 LTS-030 chr5 177099263 177150966 51704 * c(LOC202181, FAM153A) NA 0 NA 0.387 1 NA NA NA NA NA LTS-030 chr5 177150967 177344279 193313 * c(FAM153A, LOC728554) 0.376 1 NA 0.510577057779133 138 0.299061906834233 2 2 0 -5.7971771237379 LTS-030 chr5 177344280 177347981 3702 * LOC728554 NA 0 NA 0.748 1 NA NA NA NA NA LTS-030 chr5 177347982 177549334 201353 * c(N4BP3, PROP1, FAM153C, LOC728554) 0.18922228536299 8 0.233103862504004 1.0180196351468 132 0.636762499569659 6 5 1 -6.76989369145154 LTS-030 chr5 177549335 177549491 157 * N4BP3 0.46 1 NA 1.47482199729825 5 0.367624808738475 6 6 0 -5.76441195090153 LTS-030 chr5 177549492 180627250 3077759 * c(MIR1229, HEIH, BTNL3, MGAT4B, ZNF354B, OR2Y1, BTNL9, TBC1D9B, N4BP3, FLT4, RASGEF1C, OR2V1, OR2V2, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, ZNF354A, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, TRIM7, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.445821762791641 77 0.0665202855805021 1.01675735151409 3961 0.533868146147218 4 2 2 -6.74180577078304 LTS-030 chr5 180627251 180688111 60861 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 1.0075439495098 299 0.487409171308961 4 NA NA -5.76441881678935 LTS-030 chr6 203389 312023 108635 * DUSP22 0.444 1 NA 0.742578860011737 25 0.447180791179585 3 3 0 -5.76618169752355 LTS-030 chr6 312024 367481 55458 * DUSP22 0.410324134736565 9 0.0778194134590535 0.656685156193202 103 0.281683137021169 2 1 1 -6.81499911072039 LTS-030 chr6 367482 393359 25878 * IRF4 0.212 1 NA 0.946587408438233 11 0.861963857078179 4 4 0 -5.7644730997719 LTS-030 chr6 393360 1395043 1001684 * c(HUS1B, FOXF2, LINC01622, IRF4, EXOC2, FOXQ1) 0.189878849261574 16 0.0466822146718283 0.524101375479164 452 0.365525176172516 2 2 0 -6.97729424657217 LTS-030 chr6 1395044 1395801 758 * FOXF2 NA 0 NA 0.452637751905366 15 0.11025999576758 1 NA NA -5.76502341608333 LTS-030 chr6 1395802 1610708 214907 * c(FOXF2, FOXC1) NA 0 NA 1.227 1 NA NA NA NA NA LTS-030 chr6 1610709 1742794 132086 * c(FOXC1, GMDS) 0.301 1 NA 1.42786644233387 93 0.570594138280868 6 6 0 -5.76449666176367 LTS-030 chr6 1742795 4059107 2316313 * c(LOC100507194, GMDS-AS1, MIR4645, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FAM50B, GMDS, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, WRNIP1, SLC22A23, BPHL, TUBB2A, RIPK1, PRPF4B) 0.435174675194627 32 0.0496974617220327 1.16929216704253 1349 0.636644750398071 4 2 2 -6.81866555929621 LTS-030 chr6 4059108 4060609 1502 * c(FAM217A, PRPF4B) NA 0 NA 0.693 1 NA NA NA NA NA LTS-030 chr6 4060610 10393871 6333262 * c(SCARNA27, MIR3691, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, ECI2, FARS2, RPP40, SNRNP48, DSP, PIP5K1P1, F13A1, FAM217A, LY86-AS1, CAGE1, C6orf201, SLC35B3, NRN1, LYRM4, RREB1, BLOC1S5, PPP1R3G, BMP6, SSR1, HULC, TXNDC5, RIOK1, PRPF4B, CDYL, LY86, EEF1E1) 0.437806610954841 48 0.0805372914813314 1.01959168688041 2339 0.578713416341819 4 2 2 -6.73736205233707 LTS-030 chr6 10393872 10396974 3103 * TFAP2A NA 0 NA 2.25 1 NA NA NA NA NA LTS-030 chr6 10396975 10529033 132059 * c(TFAP2A-AS1, MIR5689, LINC00518, GCNT2, TFAP2A) 0.391781797225633 2 0.0636396103067893 2.3520264749118 161 1.77351650468534 13 8 5 -6.73405706698513 LTS-030 chr6 10529034 10529175 142 * GCNT2 NA 0 NA 1.435 1 NA NA NA NA NA LTS-030 chr6 10529176 10819094 289919 * c(SYCP2L, GCNT2, C6orf52, MAK, TMEM14C, PAK1IP1, TMEM14B) 0.439457340581372 3 0.0276103845198385 1.25227086473266 437 0.551691061733299 6 3 3 -6.74076439006959 LTS-030 chr6 10819095 10898981 79887 * c(SYCP2L, MAK, TMEM14B, GCM2) 0.312 1 NA 1.27373191567987 109 0.901106506157861 5 5 0 -5.76461652072417 LTS-030 chr6 10898982 12297196 1398215 * c(TMEM170B, ELOVL2-AS1, EDN1, SMIM13, SYCP2L, HIVEP1, ERVFRD-1, NEDD9, ELOVL2, ADTRP) 0.333027166615121 36 0.0533265471873122 1.2445324352379 1177 0.716321553644068 6 4 2 -6.86824701803205 LTS-030 chr6 12297197 20483206 8186010 * c(LOC100130357, RANBP9, MIR4639, CAP2, MBOAT1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SIRT5, RNF144B, GMPR, MYLIP, ID4, JARID2, NHLRC1, STMND1, TBC1D7, NOL7, FAM8A1, GFOD1, ATXN1, MCUR1, KIF13A, MIR548A1, TPMT, DEK, DTNBP1, CD83, NUP153) 0.340725351058751 52 0.0772648258798942 1.52161903867777 3024 0.778371508052607 6 4 2 -6.81197168808001 LTS-030 chr6 20483207 20486935 3729 * E2F3 NA 0 NA 0.908 1 NA NA NA NA NA LTS-030 chr6 20486936 21231497 744562 * c(E2F3, CDKAL1) 0.386032213043661 5 0.0740249957784531 1.07533390016585 173 0.514233566624302 5 3 2 -6.82018739005178 LTS-030 chr6 21231498 22570838 1339341 * c(HDGFL1, CASC15, CDKAL1, PRL, SOX4, NBAT1) 0.3551121663468 3 0.109097815437951 2.06261292160868 202 1.31195572673016 9 6 3 -6.73508125954722 LTS-030 chr6 24134484 24146761 12278 * NRSN1 0.273625981237709 2 0.0898025612106916 0.623339361418471 46 0.310519304012248 1 1 0 -6.79627592455861 LTS-030 chr6 24146762 24147409 648 * NRSN1 0.415 1 NA 1.52231522982575 13 0.625998074872111 7 7 0 -5.76441270050752 LTS-030 chr6 24147410 25652832 1505423 * c(SCGN, NRSN1, GPLD1, KAAG1, GMNN, DCDC2, TDP2, CARMIL1, ACOT13, MRS2, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.418558774902258 41 0.0507010246685313 0.965900902658047 1524 0.614839882534128 4 2 2 -6.82857371145818 LTS-030 chr6 25652833 25653598 766 * SCGN NA 0 NA 0.522 1 NA NA NA NA NA LTS-030 chr6 25653599 25921354 267756 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) 0.425821250670785 14 0.0554133815710868 0.691792360505598 352 0.284163964525384 2 1 1 -6.80613712331864 LTS-030 chr6 25921355 26285391 364037 * c(SLC17A2, TRIM38, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.465694941307314 18 0.0377839143420389 1.17184691830134 666 0.53833915891513 4 2 2 -7.04480134328113 LTS-030 chr6 26285392 26600330 314939 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HCG11, BTN2A3P, BTN1A1, HIST1H4H) 0.445579265500603 30 0.0470802201188225 0.835752450892922 677 0.420459660978434 4 2 2 -6.78025344512746 LTS-030 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.071 1 NA NA NA NA NA LTS-030 chr6 26636496 26638901 2406 * ZNF322 0.416116161734746 2 0.0919238815542511 0.378810728790101 54 0.197209630507184 2 1 1 -6.77660464914341 LTS-030 chr6 26638902 28972087 2333186 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-030 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.449374412916794 85 0.044444038396838 0.864721609096266 2038 0.361274288239893 4 2 2 -6.98627521414656 LTS-030 NA NA NA NA LTS-030 chr6 28972088 29011943 39856 * character(0) NA 0 NA 0.481 1 NA NA NA NA NA LTS-030 chr6 29011944 29572390 560447 * character(0) 0.402634053001118 16 0.119265250597146 0.608423120110092 543 0.268751215747381 2 1 1 -6.7884027108367 LTS-030 chr6 29572391 29572565 175 * character(0) NA 0 NA 1.01 1 NA NA NA NA NA LTS-030 chr6 29572566 30313209 740644 * character(0) 0.43870909118556 104 0.0681160406678623 0.897964509689215 1254 1.58052529865255 4 2 2 -6.73509019106338 LTS-030 chr6 30313210 30313214 5 * character(0) NA 0 NA 1.077 1 NA NA NA NA NA LTS-030 chr6 30313215 30882023 568809 * character(0) 0.452741543656631 25 0.0439606642352001 1.17822658384686 1627 0.552499819394776 4 2 2 -6.82407348527669 LTS-030 chr6 30882024 30882167 144 * character(0) NA 0 NA 0.755 1 NA NA NA NA NA LTS-030 chr6 30882168 30978561 96394 * character(0) 0.464363687521022 23 0.0216834940229539 0.889120076481676 362 0.508233495874332 4 2 2 -7.48019722197042 LTS-030 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.518 1 NA NA NA NA NA LTS-030 chr6 30993285 30997903 4619 * character(0) 0.4642137457621 7 0.0210034010851304 0.421055532919685 92 0.110186990330218 2 1 1 -7.54027515525444 LTS-030 chr6 30997904 31000000 2097 * character(0) NA 0 NA 0.816 1 NA NA NA NA NA LTS-030 chr6 31000001 31963974 963974 * character(0) 0.419164784554575 120 0.0747945416416449 1.12441464058874 3708 0.562210387496465 5 3 2 -6.74828246061729 LTS-030 chr6 31963975 32013859 49885 * character(0) 0.411764071361234 4 0.0237065391822594 0.676180222644087 257 0.476242347858191 5 3 2 -6.77709796681532 LTS-030 chr6 32013860 32230567 216708 * character(0) 0.451814739555039 23 0.0572925023894011 1.15835217092411 1069 0.499062507946782 4 2 2 -6.7758546573595 LTS-030 chr6 32230568 32427927 197360 * character(0) 0.43186043912861 57 0.0504853014664704 0.80813004285629 398 0.362049744719187 4 2 2 -6.78454782429947 LTS-030 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 1.641 1 NA NA NA NA NA LTS-030 chr6 32485401 32485524 124 * HLA-DRB5 0.455968150604876 2 0.0523259018078045 1.62863889139152 10 0.773175307129991 8 4 4 -6.79812563152928 LTS-030 chr6 32485525 32485527 3 * HLA-DRB5 0.275 1 NA 1.134 1 NA NA NA NA NA LTS-030 chr6 32485528 32489940 4413 * HLA-DRB5 0.292211557276279 15 0.103555828053324 3.25529265441695 42 5.85775283330541 11 8 3 -6.73307416488346 LTS-030 chr6 32489941 32627600 137660 * c(HLA-DQA1, HLA-DRB5) 0.315616963789531 91 0.0785665346461225 1.0563282728329 210 1.16752118702243 7 5 2 -6.74472597326287 LTS-030 chr6 32627601 32627627 27 * character(0) 0.5 1 NA 1.345 1 NA NA NA NA NA LTS-030 chr6 32627628 34501529 1873902 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, C6orf1, LEMD2, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, BAK1, RPS10, UQCC2) 0.413778713048452 205 0.0835678897943867 1.12186106781329 3819 1.26432396458098 5 3 2 -6.73699901470528 LTS-030 chr6 34501530 34502872 1343 * PACSIN1 NA 0 NA 1.12126794900826 28 0.320548494461583 5 NA NA -5.76444675491382 LTS-030 chr6 34502873 34555709 52837 * c(SPDEF, PACSIN1, C6orf106) 0.286 1 NA 1.40149528214458 53 0.481837890311579 6 6 0 -5.76441014081287 LTS-030 chr6 34555710 43035007 8479298 * c(LOC100131047, TOMM6, MIR3925, MIR4641, MIR4462, MIR5690, CDKN1A, CNPY3, FRS3, APOBEC2, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, CLPS, TAF8, MAPK14, CCDC167, PTCRA, DNAH8, FANCE, TREML5P, ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, UBR2, DAAM2, GLTSCR1L, MTCH1, USP49, MDGA1, BRPF3, GNMT, GLO1, GLP1R, LOC285847, PNPLA1, NA NA NA NA NA NA NA NA NA LTS-030 TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, CLPSL1, TREML1, TREML3P, CLPSL2, C6orf222, RAB44, LINC00951, MDFI, MEA1, MOCS1, C6orf226, ATP6V0CP3, RPL10A, NFYA, DEF6, MRPL2, ETV7, PPIL1, PEX6, PGC, PIM1, TREM2, TREM1, PPARD, UHRF1BP1, MRPS10, PPP2R5D, TBC1D22B, SAYSD1, TRERF1, MAPK13, LRFN2, CPNE5, PRPH2, ZFAND3, SRSF3, C6orf132, C6orf106, SNRPC, SRPK1, TAF11, TBCC, TCP11, TEAD3, BYSL, TULP1, TDRG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 ZNF76, TFEB, TREML2, KCNK16, KCNK5, RRP36, CCND3, KCNK17, KLC4, RNF8, NCR2, MED20, CUL7) 0.319038089776061 204 0.0615492888424983 1.52309173116499 9893 0.807511713184122 7 5 2 -6.76041663289147 LTS-030 NA NA NA NA LTS-030 chr6 43035008 43039681 4674 * KLC4 NA 0 NA 1.77475725358183 30 0.953748211308788 8 NA NA -5.76441087067842 LTS-030 chr6 43039682 43039809 128 * KLC4 NA 0 NA 1.07 1 NA NA NA NA NA LTS-030 chr6 43039810 43040666 857 * KLC4 0.456 1 NA 0.834982675294755 11 0.151813701621428 3 3 0 -5.76445239539027 LTS-030 chr6 43040667 46626303 3585637 * c(LINC01512, MIR4647, MIR4642, RCAN2, DNPH1, SLC22A7, CAPN11, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, ENPP4, CUL9, ZNF318, YIPF3, HSP90AB1, SLC35B2, CRIP3, TMEM151B, NFKBIE, CYP39A1, CLIC5, POLH, GTPBP2, MRPS18A, TMEM63B, AARS2, XPO5, PTK7, ENPP5, MRPL14, DLK2, SRF, MIR586, VEGFA, TTBK1, SUPT3H, RUNX2, ABCC10, KLC4, TJAP1, SLC25A27, POLR1C, MAD2L1BP, CDC5L) 0.453076069732288 49 0.0398531103950904 1.04629337270878 4025 0.543166412354283 4 2 2 -6.8256472632334 LTS-030 chr6 46626304 46987912 361609 * c(ANKRD66, ADGRF5, TDRD6, ADGRF1, MEP1A, PLA2G7, SLC25A27) 0.413350560045147 13 0.0577413552193235 0.780252029680405 671 0.323040130379801 4 2 2 -6.97132391510357 LTS-030 chr6 46987913 47647906 659994 * c(ADGRF2, CD2AP, ADGRF1, TNFRSF21) 0.441299708392679 13 0.0539577232417742 1.13772756402465 325 0.530143369273638 4 2 2 -6.7578556692252 LTS-030 chr6 47647907 51777416 4129510 * c(CRISP3, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF2, DEFB110, DEFB112, DEFB113, DEFB114, GLYATL3, PTCHD4, MUT, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.416481630535568 31 0.0923543083974424 0.733769360188943 1319 0.337761110862244 3 2 1 -7.01584216648886 LTS-030 chr6 51777417 51798862 21446 * PKHD1 NA 0 NA 0.875 1 NA NA NA NA NA LTS-030 chr6 51798863 53794802 1995940 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, LRRC1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.426220260179417 10 0.0449913571947127 0.891651427592485 1698 0.390971448350941 4 2 2 -6.87970471413145 LTS-030 chr6 53794803 56883403 3088601 * c(MLIP-IT1, BEND6, FAM83B, TINAG, HCRTR2, GFRAL, HMGCLL1, BMP5, DST, COL21A1, MLIP) 0.370514028211285 23 0.0891752283085023 0.703084483513826 1829 0.31131068166673 3 2 1 -7.03337961368795 LTS-030 chr6 56883404 56894790 11387 * BEND6 NA 0 NA 1.161 1 NA NA NA NA NA LTS-030 chr6 56894791 58445594 1550804 * c(ZNF451, GUSBP4, RAB23, PRIM2, KIAA1586, BAG2) 0.344523652264963 45 0.0984928444306509 0.869567080172448 651 0.369403047732889 3 2 1 -6.83222319044434 LTS-030 chr6 58445595 58445634 40 * character(0) NA 0 NA 0.548 1 NA NA NA NA NA LTS-030 chr6 62390154 62407067 16914 * KHDRBS2 0.418 1 NA 0.98328305117355 23 0.814497053765626 4 4 0 -5.7644144819327 LTS-030 chr6 62407068 70098789 7691722 * c(KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, ADGRB3, PTP4A1) 0.450824122753644 15 0.0462943995378645 0.781176172516095 1112 0.376674834180903 3 2 1 -8.08179037284288 LTS-030 chr6 70098790 70098901 112 * ADGRB3 NA 0 NA 1.189 1 NA NA NA NA NA LTS-030 chr6 70098902 74213864 4114963 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDC3L, RIMS1, MTO1, DPPA5, NA, MIR30A, MIR30C2, OOEP, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472, KHDC1) 0.377981185138066 40 0.0604377142824934 1.18226399250083 2061 0.658116818820437 5 3 2 -6.9068319347543 LTS-030 chr6 74213865 74214085 221 * character(0) NA 0 NA 1.67 1 NA NA NA NA NA LTS-030 chr6 74214086 74304236 90151 * c(EEF1A1, SLC17A5) 0.370916279254763 8 0.0752385491999566 1.93876529221007 178 0.955069905674684 11 7 4 -6.7366241188473 LTS-030 chr6 74304237 75795580 1491344 * c(COL12A1, CD109, SLC17A5) 0.373744926806508 11 0.0446090084664929 1.25314655042247 315 0.65945897225173 6 4 2 -6.84878366290398 LTS-030 chr6 75795581 88763822 12968242 * c(HMGN3-AS1, LOC100506804, SYNCRIP, SLC35A1, CGA, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CFAP206, PRSS35, LCA5, C6orf163, CEP162, DOPEY1, ZNF292, ORC3, IBTK, SENP6, SNORD50A, FILIP1, HTR1B, HTR1E, IMPG1, GJB7, SNHG5, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, AKIRIN2, FAM46A, TMEM30A, RARS2, SMIM8, SNX14, BCKDHB, RNY4, LINC01590, ELOVL4, SNORD50B, TPBG, TTK, SPACA1, SH3BGRL2, LINC01621, UBE3D, NA NA NA NA NA NA NA NA NA LTS-030 TBX18, HMGN3, SNAP91) 0.430862781736228 101 0.0713731860236624 0.908085467526289 5274 0.467454461591703 4 2 2 -7.05414584419473 LTS-030 NA NA NA NA LTS-030 chr6 88763823 88767318 3496 * SPACA1 NA 0 NA 0.565 1 NA NA NA NA NA LTS-030 chr6 88767319 88855099 87781 * c(CNR1, SPACA1) 0.402042560735394 2 0.074953318805774 0.570403534339723 153 0.181345224798657 2 1 1 -6.87654052724076 LTS-030 chr6 88855100 89319993 464894 * c(CNR1, RNGTT) NA 0 NA 0.863 1 NA NA NA NA NA LTS-030 chr6 89319994 90571943 1251950 * c(PNRC1, PM20D2, SRSF12, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, LYRM2, RRAGD, RNGTT, CASP8AP2) 0.431845603949407 37 0.0964502003167497 0.959743096180261 1663 0.424092317348998 4 2 2 -6.74304818657041 LTS-030 chr6 90571944 107016765 16444822 * c(LIN28B-AS1, TSTD3, MIR2113, MIR4464, MIR4643, FUT9, ASCC3, BVES, KLHL32, BVES-AS1, AIM1, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, LIN28B, COQ3, POU3F2, PREP, HACE1, PRDM13, BACH2, PRDM1, POPDC3, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, GJA10, USP45, CCNC, FHL5, ATG5, CASP8AP2) 0.408185794262181 45 0.107157549449586 0.836000681992958 3999 0.463975555644381 3 2 1 -6.88589682877329 LTS-030 chr6 107016766 108798080 1781315 * c(LOC100422737, SEC63, AIM1, LACE1, SCML4, OSTM1, C6orf203, SOBP, QRSL1, PDSS2, BEND3, NR2E1, RTN4IP1, SNX3) 0.443733775833641 22 0.0449446027462399 1.06428830883623 1201 0.543453780303967 4 2 2 -6.75474500814769 LTS-030 chr6 108798081 111280076 2481996 * c(LOC100996634, GTF3C6, CCDC162P, AK9, FOXO3, CDK19, LACE1, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC00222, CDC40, MICAL1, SMPD2, METTL24, ARMC2, DDO, SLC22A16, CD164, WASF1, ZBTB24, FIG4) 0.446172131977057 27 0.041638075660738 0.902610446742206 2188 0.481610046985485 4 2 2 -6.81926503794556 LTS-030 chr6 111280077 111347282 67206 * c(GTF3C6, RPF2) NA 0 NA 1.15519757873514 93 1.27940153691487 5 NA NA -5.76444674160686 LTS-030 chr6 111347283 111368126 20844 * GSTM2P1 NA 0 NA 0.492 1 NA NA NA NA NA LTS-030 chr6 111368127 111544882 176756 * c(SLC16A10, GSTM2P1) 0.141 1 NA 0.587685599530013 101 0.400159275219948 2 2 0 -5.76464270712325 LTS-030 chr6 111544883 114376832 2831950 * c(TRAF3IP2, HS3ST5, FYN, LINC01268, FLJ34503, HDAC2, LAMA4, MARCKS, RFPL4B, TUBE1, REV3L, FAM229B, TRAF3IP2-AS1, WISP3, MFSD4B) 0.181004651048491 21 0.0602718049853369 0.574143704518251 1419 0.415221854549641 2 2 0 -6.79229551287987 LTS-030 chr6 114376833 114384131 7299 * HS3ST5 NA 0 NA 0.403808063972457 61 0.142185474960059 1 NA NA -5.76445244276167 LTS-030 chr6 116262698 116758932 496235 * c(COL10A1, NT5DC1, TSPYL4, FRK, DSE, TSPYL1, TPI1P3) 0.483 1 NA 0.94170093772693 533 0.409824571373464 4 4 0 -5.77079951553073 LTS-030 chr6 116758933 119498445 2739513 * c(TRAPPC3L, LOC100287632, NUS1, FAM26D, ZUFSP, FAM162B, GPRC6A, RFX6, SLC35F1, BRD7P3, VGLL2, FAM26E, MCM9, ASF1A, DCBLD1, DSE, RSPH4A, KPNA5, CEP85L, MAN1A1, FAM26F, RWDD1, PLN, GOPC, ROS1, MIR548B, FAM184A) 0.397041754968162 25 0.157382686468366 0.887770345163032 2281 0.431273759913122 3 2 1 -6.84209426813509 LTS-030 chr6 119498446 121401566 1903121 * c(TBC1D32, LOC285762, MAN1A1) NA 0 NA 0.776197886815474 151 0.372868042279896 3 NA NA -5.77152756267037 LTS-030 chr6 121401567 121401651 85 * TBC1D32 NA 0 NA 0.606 1 NA NA NA NA NA LTS-030 chr6 121401652 121401708 57 * TBC1D32 0.318 1 NA 0.301 1 NA NA NA NA NA LTS-030 chr6 121401709 126320780 4919072 * c(TRDN, SMPDL3A, CLVS2, NCOA7, HINT3, RNF217, NKAIN2, FABP7, TBC1D32, HEY2, GJA1, HSF2, HDDC2, PKIB, SERINC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1) 0.201247773189168 25 0.0847237078193977 0.577356436895263 1824 0.34121657525201 2 2 0 -6.87428633325792 LTS-030 chr6 126320781 133052574 6731794 * c(SMLR1, LINC01013, MIR5695, TMEM200A, TAAR1, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, TAAR6, C6orf58, ARG1, CENPW, SOGA3, THEMIS, LAMA2, ENPP1, ENPP3, VNN3, ECHDC1, PTPRK, TRMT11, CTAGE9, OR2A4, RNF146, TAAR8, STX7, L3MBTL3, RSPO3, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, KIAA0408) 0.202494305167087 41 0.0896958682464683 0.48246464152008 3161 0.269471394848301 1 1 0 -8.44643302224884 LTS-030 chr6 133052575 150240130 17187556 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, GINM1, IL22RA2, SLC18B1, ADAT2, STXBP5, RAET1E, LOC153910, ZC2HC1B, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EYA4, TAB2, SASH1, HEBP2, FUCA2, SHPRH, CCDC28A, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, SLC35D3, ZC3H12D, IFNGR1, NA NA NA NA NA NA NA NA NA LTS-030 ECT2L, NUP43, RAET1G, HMGA1P7, SUMO4, SAMD5, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, HYMAI, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, SNORA33, RPS12, PERP, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, MAP7, LATS1, TBPL1, PHACTR2, BCLAF1) 0.181198242405793 136 0.091964201617178 0.568269892716127 8242 0.328052577713971 2 2 0 -7.00314172884216 LTS-030 NA NA NA NA LTS-030 chr6 150240131 150385915 145785 * c(RAET1E-AS1, RAET1L, RAET1G, RAET1K, ULBP3, ULBP2, ULBP1) 0.156615937466869 5 0.0583206652911299 0.396229571483622 104 0.240267077403341 2 2 0 -6.9933182708386 LTS-030 chr6 150385916 150386523 608 * ULBP3 NA 0 NA 0.715 1 NA NA NA NA NA LTS-030 chr6 150386524 152646486 2259963 * c(ESR1, SYNE1, MTHFD1L, IYD, RMND1, PLEKHG1, ZBTB2, ULBP3, ARMT1, CCDC170, PPP1R14C, AKAP12) 0.174928422663969 38 0.0537460177492024 0.655412173079136 1814 0.845474816771507 2 2 0 -6.76877702264316 LTS-030 chr6 152646487 154415434 1768948 * c(SYNE1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.186578029990306 14 0.0699070025890755 0.488239623372939 928 0.2635600769715 2 2 0 -7.36688587076958 LTS-030 chr6 154415435 154415493 59 * OPRM1 NA 0 NA 0.674 1 NA NA NA NA NA LTS-030 chr6 154415494 160577102 6161609 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SLC22A1, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.163930279111442 74 0.066189366293178 0.617549540313258 3931 0.938775907551246 2 2 0 -6.73717741013295 LTS-030 chr6 160577103 160579518 2416 * SLC22A1 NA 0 NA 0.252 1 NA NA NA NA NA LTS-030 chr6 160579519 167590606 7011088 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, LPA, MAP3K4, LINC00602, PARK2, MPC1, PLG, AGPAT4, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, T, AGPAT4-IT1, LPAL2, RNASET2, LINC00473, QKI) 0.190784878626054 30 0.0816347979104809 0.555759819422476 2557 0.276867758913473 2 2 0 -7.08299358572637 LTS-030 chr6 167590607 167622133 31527 * TCP10L2 0.247205540609475 10 0.0849198314752083 0.26940510671449 162 0.272694593400458 1 1 0 -6.77169116075822 LTS-030 chr6 167622134 167797887 175754 * c(UNC93A, TCP10, TTLL2) 0.140724506669059 8 0.0386328875441637 0.496942925293429 289 0.288085755318342 2 2 0 -7.00532616001625 LTS-030 chr6 167797888 170598352 2800465 * c(HGC6.3, LOC154449, DACT2, WDR27, LINC01558, DLL1, KIF25, C6orf120, LINC00242, AFDN, PHF10, ERMARD, SMOC2, AFDN-AS1, TCP10, TCTE3, THBS2, FRMD1, LINC00574) 0.169749042232641 38 0.0637363267349276 0.671377761328675 1494 0.313082908191153 2 2 0 -6.95267870645315 LTS-030 chr6 170598353 170893599 295247 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.548762225057957 325 0.294615175400807 2 NA NA -5.77991245446495 LTS-030 chr7 193047 227987 34941 * FAM20C 0.28 1 NA 0.681132481274796 37 0.287169190798986 2 2 0 -5.76862607776027 LTS-030 chr7 227988 2968359 2740372 * c(WI2-2373I1.2, MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19) 0.147509645273611 94 0.0544657083279476 0.713823091900941 3372 0.421031095282262 3 3 0 -6.96291406758522 LTS-030 chr7 2968360 2968361 2 * CARD11 0.204 1 NA 0.273 1 NA NA NA NA NA LTS-030 chr7 2968362 4897716 1929355 * c(MIR4656, SDK1, FOXK1, RADIL, PAPOLB, CARD11, AP5Z1) 0.169624337278209 28 0.0547143012557481 0.701476968304369 934 0.325594546207192 2 2 0 -6.99899635262587 LTS-030 chr7 4897717 4947013 49297 * c(MMD2, RADIL, PAPOLB) 0.187976774408118 4 0.057093490580509 0.400249782051054 128 0.138327928834597 2 2 0 -7.06938303718552 LTS-030 chr7 4947014 4947099 86 * MMD2 NA 0 NA 0.652 1 NA NA NA NA NA LTS-030 chr7 4947100 5920657 973558 * c(RBAK-RBAKDN, RNF216-IT1, MMD2, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216P1, RNF216, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.166995501553788 36 0.088187624658209 0.732631207203729 1121 0.421986163280795 2 2 0 -6.86391314932284 LTS-030 chr7 5920658 5922083 1426 * OCM NA 0 NA 0.337 1 NA NA NA NA NA LTS-030 chr7 5922084 6017391 95308 * c(RSPH10B, CCZ1, PMS2, OCM) 0.220037843061038 2 0.104651803615609 0.300539136678272 149 0.241013875328481 1 1 0 -6.85293391267341 LTS-030 chr7 6017392 6018170 779 * PMS2 NA 0 NA 1.236 1 NA NA NA NA NA LTS-030 chr7 6018171 6786822 768652 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.145836791994995 22 0.0775095581314434 0.635715968560355 1318 0.387184007382537 2 2 0 -6.78056138110734 LTS-030 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.045 1 NA NA NA NA NA LTS-030 chr7 6790904 6844701 53798 * c(CCZ1B, PMS2CL, RSPH10B2) 0.307 1 NA 0.331432487371062 81 0.199483172501119 1 1 0 -5.79161111011157 LTS-030 chr7 6844702 23214595 16369894 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, LOC100506178, KLHL7-AS1, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, IL6, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TOMM7, TMEM106B, CDCA7L, KLHL7, C1GALT1, ANKMY2, RPA3, SP4, SNORD93, TWIST1, UMAD1, ISPD, NA NA NA NA NA NA NA NA NA LTS-030 FAM126A, SCIN, DNAH11, PHF14, HDAC9, RAPGEF5) 0.185081055007796 120 0.0881053927071983 0.527620485899899 5522 0.306861274717173 2 2 0 -8.09197817357176 LTS-030 NA NA NA NA LTS-030 chr7 23214596 31149295 7934700 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, CBX3, MALSU1, ADCYAP1R1, CLK2P1, C7orf31, CRHR2, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, RPS2P32, OSBPL3, GARS, GHRHR, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, NA NA NA NA NA NA NA NA NA LTS-030 HOXA10, HOXA11, HOXA13, FAM221A, AQP1, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, NPY, MPP6, CYCS, CPVL, FKBP14, KLHL7, STK31, NPVF, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.187623474027394 69 0.0954108181047815 0.601296067740882 4927 0.388466782172284 2 2 0 -6.76705088267754 LTS-030 NA NA NA NA LTS-030 chr7 31149296 39874090 8724795 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, PPP1R17, POU6F2, FKBP9, ADCYAP1R1, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, NEUROD6, HERPUD2, SFRP4, LOC646999, MIR550A2, EEPD1, NA NA NA NA NA NA NA NA NA LTS-030 STARD3NL, ELMO1, SEPT7) 0.17741548955942 104 0.0822849648515896 0.538368566544994 3970 0.334590584245234 2 2 0 -7.23403143909371 LTS-030 NA NA NA NA LTS-030 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.197 1 NA NA NA NA NA LTS-030 chr7 39892331 39990041 97711 * CDK13 NA 0 NA 0.297875153537615 40 0.215614274538156 1 NA NA -5.86883781713503 LTS-030 chr7 39990042 45125578 5135537 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, YKT6, MPLKIP, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, INHBA, RASA4CP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, COA1, PSMA2, PURB, MYL7, MYO1G, BLVRA, MRPS24, MRPL32, SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, POLR2J4, CDK13, STK17A, H2AFV) 0.151001326461144 36 0.0685738855379931 0.629883376417837 3720 0.363639992787578 2 2 0 -6.81709718030562 LTS-030 chr7 45125579 45632504 506926 * c(RAMP3, ADCY1, NACAD, SNORA5B, SNORA5C, TBRG4) NA 0 NA 0.572747675870652 155 0.209896631450884 2 NA NA -5.77804187365467 LTS-030 chr7 45632505 45649962 17458 * ADCY1 NA 0 NA 0.902 1 NA NA NA NA NA LTS-030 chr7 45649963 45703971 54009 * ADCY1 0.395 1 NA 0.865816522047096 37 0.245428561252921 3 3 0 -5.76783486710227 LTS-030 chr7 45703972 48260952 2556981 * c(ADCY1, C7orf57, ABCA13, PKD1L1, SUN3, HUS1, IGFBP1, IGFBP3, C7orf65, SEPT7P2, TNS3, UPP1, C7orf69, LINC00525) 0.438149576441467 33 0.0861788683407066 0.963094735759113 1436 0.489998257331534 4 2 2 -6.74207087768728 LTS-030 chr7 48260953 48266849 5897 * ABCA13 NA 0 NA 0.573 1 NA NA NA NA NA LTS-030 chr7 48266850 50515038 2248189 * c(C7orf72, IKZF1, ZPBP, ABCA13, CDC14C, VWC2, FIGNL1) 0.425057056695561 28 0.0642947392254101 0.706286695779714 971 0.329182305066496 2 1 1 -7.08110933707981 LTS-030 chr7 50515039 50530852 15814 * c(DDC, FIGNL1) NA 0 NA 2.719 1 NA NA NA NA NA LTS-030 chr7 50530853 53930236 3399384 * c(DDC-AS1, DDC, COBL, POM121L12, GRB10, LINC01446) 0.443882256242945 19 0.0542076902681762 0.904935534688046 527 0.403946789460773 4 2 2 -6.86084161211904 LTS-030 chr7 53930237 53934389 4153 * character(0) 0.348691005771132 4 0.040260609367801 0.453546504205024 77 0.283043219517501 6 4 2 -6.79378849189354 LTS-030 chr7 53934390 53934397 8 * character(0) NA 0 NA 0.671 1 NA NA NA NA NA LTS-030 chr7 53934398 55538381 1603984 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, LANCL2, VOPP1) 0.380090443434109 23 0.137106706662576 0.887770243768053 623 0.375228119728817 3 2 1 -6.80865549917442 LTS-030 chr7 55538382 55540401 2020 * VOPP1 0.452 1 NA 0.426340243927879 60 0.254339356912327 1 1 0 -5.76449742550223 LTS-030 chr7 55540402 55540646 245 * VOPP1 NA 0 NA 0.748 1 NA NA NA NA NA LTS-030 chr7 55540647 57532969 1992323 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.395508370399248 27 0.0644673993895022 1.00927820414668 831 0.693056274836243 5 3 2 -6.84090319708628 LTS-030 chr7 57532970 57533232 263 * ZNF716 NA 0 NA 5.49514244655315 3 3.18524143511916 20 NA NA -5.76441123509266 LTS-030 chr7 62758725 63023528 264804 * ZNF733P 0.402 1 NA 0.810128455182989 7 0.428409016845217 3 3 0 -5.76456394944882 LTS-030 chr7 63023529 65160108 2136580 * c(LOC100128885, LINC01005, ZNF273, ZNF92, ZNF679, ERV3-1, ZNF680, LOC441242, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, INTS4P2, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.432447609484494 21 0.0536118767936111 0.832786479630064 734 0.527739125637731 4 2 2 -6.89130328864545 LTS-030 chr7 65160109 65220523 60415 * c(LOC441242, CCT6P1, INTS4P2, SNORA22) NA 0 NA 1.339 1 NA NA NA NA NA LTS-030 chr7 65220524 66104101 883578 * c(VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, CCT6P1, SNORA22, TPST1) 0.494 1 NA 1.24756565861169 425 2.34711882781094 5 5 0 -5.76455183914226 LTS-030 chr7 66104102 66786524 682423 * c(MIR4650-2, KCTD7, RABGEF1, SBDS, PMS2P4, TMEM248, TYW1, STAG3L4, GTF2IRD1P1) 0.460084113986283 2 0.0254558441227157 0.801800655252463 501 0.446313376957377 4 2 2 -7.22987552903691 LTS-030 chr7 69063868 71248232 2184365 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, CALN1) 0.433401539742438 16 0.0419658591397023 1.16264701595858 416 0.821508879250518 4 2 2 -6.78614372440874 LTS-030 chr7 71248233 72718831 1470599 * c(MIR4650-1, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, CALN1, FKBP6, POM121) 0.381837283246885 7 0.0879748340639039 0.766462465119808 543 0.848843265573544 3 2 1 -6.74064511681162 LTS-030 chr7 72718832 74210670 1491839 * c(MIR4284, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, NSUN5, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, FZD9, ABHD11, GTF2IRD2, DNAJC30, FKBP6, BAZ1B, BCL7B, GTF2IRD1) 0.459887541203772 30 0.0292203086359745 1.20508559722734 1891 0.590108434861981 6 3 3 -7.0924965895442 LTS-030 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.81 1 NA NA NA NA NA LTS-030 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.461 1 NA 0.786334182948832 224 0.490705860400887 3 3 0 -5.76497671121806 LTS-030 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.819 1 NA NA NA NA NA LTS-030 chr7 75048588 76634994 1586407 * c(POM121C, LOC100133091, MIR4651, CCL26, DTX2, SSC4D, SRRM3, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A) 0.42128810208145 32 0.0954590775351981 1.21440599041652 1279 0.63645258116977 5 3 2 -6.7404967291537 LTS-030 chr7 76634995 76713177 78183 * c(PMS2P9, DTX2P1-UPK3BP1-PMS2P11) NA 0 NA 0.859 1 NA NA NA NA NA LTS-030 chr7 76713178 83016417 6303240 * c(MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3C, FGL2, RSBN1L, PCLO, GNAI1, HGF, GNAT3, RPL13AP17, GSAP, PHTF2, CCDC146, PTPN12, CACNA2D1, TMEM60, CD36, SEMA3E, MAGI2) 0.442923913843814 28 0.0503326894734389 0.880344705712548 2362 0.412940446488284 4 2 2 -7.07755406328633 LTS-030 chr7 83016418 83021805 5388 * SEMA3E NA 0 NA 1.075 1 NA NA NA NA NA LTS-030 chr7 83021806 88389487 5367682 * c(SEMA3A, DBF4, TP53TG1, RUNDC3B, ZNF804B, KIAA1324L, SEMA3D, GRM3, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, SEMA3E, DMTF1) 0.423386201100502 14 0.0581793834561751 1.00581766907085 2321 0.511646382969292 4 2 2 -6.77440290851987 LTS-030 chr7 88389488 89859386 1469899 * c(C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4) 0.42520328705835 7 0.0562151479331226 0.730398818160126 214 0.350224360916322 2 1 1 -7.0382474162433 LTS-030 chr7 89859387 89861635 2249 * STEAP2 NA 0 NA 0.997 1 NA NA NA NA NA LTS-030 chr7 89861636 92463045 2601410 * c(LOC101409256, AKAP9, CDK6, CYP51A1, FAM133B, STEAP2, LRRD1, PEX1, CDK14, ANKIB1, GATAD1, MTERF1, CFAP69, FZD1, RBM48, NA, GTPBP10, KRIT1, CLDN12) 0.407576454073466 16 0.0623201412065153 1.13161339539198 2249 0.780079313301411 5 3 2 -6.74365753111835 LTS-030 chr7 92463046 92728858 265813 * c(CDK6, SAMD9) NA 0 NA 0.814 1 NA NA NA NA NA LTS-030 chr7 92728859 92848748 119890 * c(SAMD9L, HEPACAM2, SAMD9) 0.43327772233381 8 0.0389935892166905 0.704190968165202 331 0.318891065526486 2 1 1 -6.76288507994011 LTS-030 chr7 92848749 92848755 7 * HEPACAM2 NA 0 NA 0.996 1 NA NA NA NA NA LTS-030 chr7 92848756 97823924 4975169 * c(LOC100506136, MIR4652, SLC25A13, BET1, COL1A2, DLX5, DLX6, DYNC1I1, LMTK2, PEG10, HEPACAM2, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, ASNS, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, VPS50, SDHAF3, MIR489, CASD1, TAC1, MIR591, MIR653, SHFM1, TFPI2, CALCR, SGCE) 0.407162335111338 43 0.0652254459853416 1.06294870422151 2546 0.531939387867367 5 3 2 -6.88744646726606 LTS-030 chr7 97823925 97832851 8927 * LMTK2 NA 0 NA 1.398 1 NA NA NA NA NA LTS-030 chr7 97832852 99082830 1249979 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, BHLHA15, TMEM130, LMTK2, BRI3, TECPR1, PTCD1, ZNF789, KPNA7, NPTX2, BAIAP2L1, SMURF1, TRRAP, MYH16, BUD31, ATP5J2) 0.40191646717585 36 0.0868964490479494 1.36868055962789 1842 0.610608529728734 5 3 2 -6.77370719165903 LTS-030 chr7 99082831 99565959 483129 * c(GS1-259H13.2, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4) NA 0 NA 0.93874514046684 990 0.44002760372703 4 NA NA -5.77038612350843 LTS-030 chr7 99565960 100416250 850291 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPHB4, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, GIGYF1, AZGP1P1, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.427655997826447 44 0.0541724597108208 1.18053952265492 2912 1.48320919815528 7 4 3 -6.75549940934175 LTS-030 chr7 100416251 100547278 131028 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6) 0.279 1 NA 1.30411326268712 405 0.702706283713904 6 6 0 -5.76523086797036 LTS-030 chr7 100547279 100624879 77601 * MUC12 0.368412666309594 150 0.080739346683685 1.12860225528711 359 0.619987747865854 3 2 1 -6.74973687512861 LTS-030 chr7 100624880 100633823 8944 * MUC12 NA 0 NA 0.564 1 NA NA NA NA NA LTS-030 chr7 100633824 100699383 65560 * c(MUC12, MUC17) 0.3356703047747 28 0.118684121241726 0.657305053510899 365 0.389020531575978 3 2 1 -6.80315977058148 LTS-030 chr7 100699384 100701861 2478 * MUC17 NA 0 NA 0.720058189080414 22 0.371935757614414 3 NA NA -5.76452752230419 LTS-030 chr7 100701862 100803710 101849 * c(MIR4653, AP1S1, MUC17, SERPINE1, TRIM56) 0.498 1 NA 1.18114273126375 171 0.835380062473848 5 5 0 -5.76443350871361 LTS-030 chr7 100803711 102109449 1305739 * c(LOC100289561, MIR4285, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, FIS1, ALKBH4, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, PLOD3, MYL10) 0.443634903910247 20 0.0593113107168217 1.20574044515726 1499 0.677733162349834 6 3 3 -6.77553523578907 LTS-030 chr7 102109450 102109980 531 * LRWD1 NA 0 NA 0.702 1 NA NA NA NA NA LTS-030 chr7 102109981 105890639 3780659 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SPDYE2B, MIR4467, NAMPT, RASA4, LRRC17, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, POLR2J2, DNAJC2, DPY19L2P2, SLC26A5, LHFPL3, ORC5, POLR2J, PUS7, POLR2J3, KMT2E, RELN, PSMC2, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, ARMC10, PMPCB) 0.418932473069723 48 0.0719066573822377 0.859526000601416 2538 0.487458055940416 4 2 2 -6.98890189886604 LTS-030 chr7 105890640 105909130 18491 * NAMPT NA 0 NA 0.468828084297706 65 0.307774363998393 1 NA NA -5.76753063827308 LTS-030 chr7 105909131 105909667 537 * NAMPT NA 0 NA 0.981 1 NA NA NA NA NA LTS-030 chr7 105909668 108154691 2245024 * c(NAMPT, COG5, DUS4L, CCDC71L, DLD, SLC26A3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LAMB1, NRCAM, PNPLA8, SLC26A4, PIK3CG, PRKAR2B, BCAP29, CBLL1) 0.443677647242652 47 0.043906921565194 0.941270060404275 2049 0.525750694802243 4 2 2 -6.75871947317523 LTS-030 chr7 108154692 115897585 7742894 * c(MIR3666, ZNF277, BMT2, C7orf66, THAP5, TFEC, TES, LSMEM1, MDFIC, IFRD1, LINC00998, DNAJB9, EIF3IP1, PNPLA8, GPR85, LRRN3, PPP1R3A, TMEM168, IMMP2L, FOXP2, DOCK4) 0.41616835645027 19 0.0807134850360624 0.763325041514429 1920 0.411530316742345 3 2 1 -6.95449165121865 LTS-030 chr7 115897586 115897665 80 * TES NA 0 NA 1.01 1 NA NA NA NA NA LTS-030 chr7 115897666 120988927 5091262 * c(FAM3C, CFTR, ASZ1, TSPAN12, TES, ST7-OT4, KCND2, MET, WNT16, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.429693700814898 35 0.0534720063414949 0.934385451581712 2033 0.476962651946593 4 2 2 -6.8109925325638 LTS-030 chr7 120988928 120990550 1623 * FAM3C 0.493 1 NA 0.31392780559226 42 0.132588341903906 1 1 0 -5.76753902244473 LTS-030 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.63 1 NA NA NA NA NA LTS-030 chr7 120990582 127222206 6231625 * c(AASS, FAM3C, ASB15, FEZF1-AS1, IQUB, C7orf77, RNF133, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, RNF148, FEZF1, LMOD2, NDUFA5, TAS2R16, PTPRZ1, SLC13A1, SPAM1, MIR592, TMEM229A, GCC1, WASL, CADPS2) 0.44120473305124 30 0.0483319579669554 0.77980439966286 1971 0.451962609553855 4 2 2 -7.69534767110604 LTS-030 chr7 127222207 131084187 3861981 * c(LOC100130705, SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, MGC27345, KLHDC10, FLNC, AHCYL2, TNPO3, COPG2, SND1, SND1-IT1, TPI1P2, HILPDA, FSCN3, MESTIT1, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, ARF5, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, MIR335, NRF1, PAX4, CPA4, ZC3HC1, RBM28, METTL2B, STRIP2, OPN1SW, LRRC4, NA, CCDC136, NA NA NA NA NA NA NA NA NA LTS-030 SMO, MIR593, UBE2H, GCC1, CALU, FAM71F1, TMEM209, ATP6V1F, CPA5, CEP41) 0.450735016268071 48 0.0766719750320751 1.02125566659704 4115 0.549379600456586 4 2 2 -6.75132032660551 LTS-030 NA NA NA NA LTS-030 chr7 131084188 131096039 11852 * MKLN1 NA 0 NA 1.669 1 NA NA NA NA NA LTS-030 chr7 131096040 131849981 753942 * c(MKLN1, PODXL, PLXNA4) 0.391204374129341 5 0.0371981182319751 1.38129797800587 513 0.616103121848149 8 5 3 -6.8246824506458 LTS-030 chr7 131849982 131864591 14610 * PLXNA4 0.298 1 NA 1.74519777361594 23 0.697885343426246 8 8 0 -5.76442885108252 LTS-030 chr7 131864592 141445499 9580908 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, FLJ40288, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, LUC7L2, MRPS33, CHCHD3, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, MIR490, PTN, KIAA1549, EXOC4, C7orf73, NA NA NA NA NA NA NA NA NA LTS-030 PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, ADCK2, PLXNA4, DGKI, ZC3HAV1L) 0.352723522967242 108 0.0819837524743893 1.33224436736243 6488 0.70134860773785 6 4 2 -6.76379524780598 LTS-030 NA NA NA NA LTS-030 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.728 1 NA NA NA NA NA LTS-030 chr7 141450032 141765655 315624 * c(OR9A4, PRSS37, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, MGAM) 0.332782559307525 20 0.123402582503046 0.887710119223534 474 0.575837165165242 4 3 1 -6.78477954944946 LTS-030 chr7 141765656 141794410 28755 * MGAM NA 0 NA 0.299583385220999 93 0.121622067497958 1 NA NA -5.85740443634757 LTS-030 chr7 141794411 141794586 176 * MGAM NA 0 NA 1.212 1 NA NA NA NA NA LTS-030 chr7 141794587 142211139 416553 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.325489078853437 30 0.0786185684831823 1.08098756083964 643 0.543109926400865 4 3 1 -6.80365023267454 LTS-030 chr7 142211140 142223916 12777 * character(0) NA 0 NA 1.492 1 NA NA NA NA NA LTS-030 chr7 142223917 142571915 347999 * c(MTRNR2L6, PRSS3P2, EPHB6, TRPV6, PRSS1) 0.316884270228035 39 0.101289246571318 1.50263126620952 445 0.693162371954883 7 5 2 -6.73615055738494 LTS-030 chr7 142571916 142960536 388621 * c(OR9A2, C7orf34, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.378 1 NA 1.04060853638213 461 0.391609299903144 4 4 0 -5.7668182984831 LTS-030 chr7 142960537 143295592 335056 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.385559907475385 5 0.058683898984304 1.4920295334491 729 0.750288699438431 8 5 3 -6.7460202905286 LTS-030 chr7 143295593 143295603 11 * character(0) NA 0 NA 0.127 1 NA NA NA NA NA LTS-030 chr7 143295604 143321183 25580 * TCAF2 NA 0 NA 0.13736681161166 61 0.105627285761151 0 NA NA -5.9409817671208 LTS-030 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.73 1 NA NA NA NA NA LTS-030 chr7 143400289 143884193 483905 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.371940293237804 8 0.0791707016515579 0.796534997495198 315 0.656841652674294 3 2 1 -6.7332566896116 LTS-030 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.16 1 NA NA NA NA NA LTS-030 chr7 143928927 143982483 53557 * c(OR2A7, ARHGEF34P) NA 0 NA 0.482975344085028 95 0.33365969715421 1 NA NA -5.77514259480595 LTS-030 chr7 143982484 144074304 91821 * c(ARHGEF34P, ARHGEF5) 0.346453960766686 2 0.000707106781186548 0.864782598498228 84 0.59698926493201 12 8 4 -7.60539403906024 LTS-030 chr7 144074305 148312794 4238490 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, CNTNAP2, TPK1, ARHGEF5) 0.343222634182771 15 0.0681897213312835 1.1442422986168 572 0.631643502004674 6 4 2 -7.00588808324266 LTS-030 chr7 148312795 149941516 1628722 * c(ZNF783, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.349667754483414 36 0.0726130153622613 1.42671256322641 2266 0.83005610124162 6 4 2 -6.73851914625501 LTS-030 chr7 149941517 149945037 3521 * ACTR3C 0.448 1 NA 0.406021112528672 78 0.247878355558082 1 1 0 -5.76442312695806 LTS-030 chr7 149945038 149945050 13 * ACTR3C NA 0 NA 0.779 1 NA NA NA NA NA LTS-030 chr7 149945051 149945095 45 * ACTR3C 0.225 1 NA 1.171 1 NA NA NA NA NA LTS-030 chr7 149945096 149945910 815 * ACTR3C 0.462 1 NA 0.941261747744436 19 0.453098623450899 4 4 0 -5.7644188520832 LTS-030 chr7 149945911 150558443 612533 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.457908327453775 45 0.0309309756154773 0.842817674673662 944 0.43422561420247 4 2 2 -7.01375643840088 LTS-030 chr7 150558444 150558524 81 * character(0) NA 0 NA 1.416 1 NA NA NA NA NA LTS-030 chr7 150558525 153418368 2859844 * c(LINC01003, WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, FABP5P3, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, ACTR3B, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, XRCC2, MIR671, TMUB1, ASIC3) 0.428315864042193 55 0.0830249526404126 1.08899391184129 2811 0.509813612423376 4 2 2 -6.78989656459668 LTS-030 chr7 153418369 153421877 3509 * character(0) NA 0 NA 0.395352702173813 71 0.244874590331336 1 NA NA -5.76441194679512 LTS-030 chr7 153421878 153421898 21 * character(0) NA 0 NA 0.68 1 NA NA NA NA NA LTS-030 chr7 153421899 158937585 5515687 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.439076936509347 107 0.0612336281870402 0.93249429960622 3262 0.952750977423013 4 2 2 -6.75081716494012 LTS-030 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.701 2 0 0 NA NA -Inf LTS-030 chr8 182757 195254 12498 * ZNF596 0.106 1 NA 0.976941858103589 29 0.371060874269699 4 4 0 -5.76443977100384 LTS-030 chr8 195255 4852349 4657095 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.0900277253203077 58 0.0439801142986294 1.17029050166091 1860 0.56020206431067 5 5 0 -6.75721383293117 LTS-030 chr8 4852350 7272476 2420127 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, ANGPT2, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, USP17L4, DEFA11P, DEFA1B, MCPH1) 0.0616315809273195 27 0.0326346432954298 1.49095712703845 533 0.854498098676556 7 7 0 -6.74324154766128 LTS-030 chr8 7272477 7721041 448565 * c(DEFB4B, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.135363958344777 4 0.104027240022345 0.413010797978062 123 0.421331152132655 2 2 0 -6.98363384477897 LTS-030 chr8 7721042 11619656 3898615 * c(FAM66E, ZNF705B, MIR1322, MIR548I3, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, TDH, DEFB4A, PRSS55, C8orf74, GATA4, FAM86B3P, XKR6, USP17L8, MIR124-1, MSRA, PINX1, BLK, USP17L3, SPAG11A, MTMR9, MIR597, MIR598, PPP1R3B, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TNKS, ERI1, MFHAS1, RP1L1) 0.0674404103424507 71 0.0261095355585368 1.32253818662147 2426 0.746767511192018 6 6 0 -6.75544167918361 LTS-030 chr8 11619657 11708553 88897 * c(CTSB, FDFT1, NEIL2) 0.051721233130125 3 0.0155670592384475 1.95241726652112 268 1.0457139614276 9 9 0 -6.74688590276022 LTS-030 chr8 11708554 11710077 1524 * CTSB NA 0 NA 1.176 1 NA NA NA NA NA LTS-030 chr8 11710078 16859688 5149611 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, DEFB109P1, DEFB130, FGF20, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, LONRF1) 0.0897468019454508 36 0.0467765373284988 1.06021079294926 960 0.665735345215026 4 4 0 -6.77929660387768 LTS-030 chr8 16859689 16884750 25062 * MICU3 NA 0 NA 2.308 1 NA NA NA NA NA LTS-030 chr8 16884751 17486042 601292 * c(VPS37A, MICU3, CNOT7, ZDHHC2, PDGFRL, SLC7A2, MTMR7) 0.0763447263076485 20 0.0401293959716893 1.28433637840607 652 0.719791344906451 5 5 0 -6.74946979021954 LTS-030 chr8 17486043 20110904 2624862 * c(NAT2, LOC100128993, LZTS1, FGL1, PSD3, LPL, ASAH1, PCM1, PDGFRL, ATP6V1B2, INTS10, CSGALNACT1, MTUS1, SH2D4A, SLC18A1, NAT1) 0.0866015005520412 43 0.0423506561116791 0.920868927969646 1768 0.559105035405389 4 4 0 -6.81666999915798 LTS-030 chr8 20110905 23430958 3320054 * c(LOC100507156, LZTS1-AS1, SORBS3, NPM2, LZTS1, PEBP4, EGR3, R3HCC1, LGI3, DMTN, XPO7, RHOBTB2, SLC39A14, LOC254896, GFRA2, LOC286059, LOC286114, LOC389641, LOXL2, MIR320A, SLC25A37, C8orf58, PIWIL2, PPP3CC, HR, BIN3, CCAR2, PDLIM2, SFTPC, FAM160B2, BMP1, POLR3D, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, DOK2, CHMP7, ENTPD4, PHYHIP) 0.102498522873947 84 0.0401672635965005 1.05585166471665 3572 0.506145755012342 4 4 0 -6.76091557070965 LTS-030 chr8 23430959 26723049 3292091 * c(PNMA2, ADAM28, NKX2-6, ADRA1A, CDCA2, DPYSL2, ADAMDEC1, GNRH1, NEFM, NEFL, NKX3-1, KCTD9, PPP2R2A, EBF2, BNIP3L, STC1, DOCK5, ADAM7) 0.110027999934837 60 0.0557540882947782 0.861867881233224 2190 0.562614823044516 3 3 0 -6.80359763596376 LTS-030 chr8 26723050 26944733 221684 * character(0) 0.24 1 NA 0.740039032426757 25 0.280191470248471 3 3 0 -5.7744801309481 LTS-030 chr8 26944734 27094056 149323 * STMN4 0.368 1 NA 0.960218120768897 31 0.371476342609162 4 4 0 -5.76547986999736 LTS-030 chr8 27094057 30689189 3595133 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, SCARA3, SARAF, PNOC, ELP3, PPP2CB, CCDC25, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, HMBOX1, FZD3, UBXN8, STMN4) 0.29632674720722 70 0.06516167026114 1.26788159408346 3364 0.68360803940707 4 3 1 -6.98371214714596 LTS-030 chr8 30689190 32622252 1933063 * c(NRG1-IT3, PURG, NRG1, TEX15, WRN) 0.312777068899299 20 0.0584595901816847 1.05229266574736 702 0.574289401506169 4 3 1 -6.77352907339924 LTS-030 chr8 32622253 33354267 732015 * c(NRG1, TTI2, MAK16, FUT10) NA 0 NA 1.06346882665098 137 0.496756239719544 4 NA NA -5.77114231478406 LTS-030 chr8 33354268 33354738 471 * c(TTI2, MAK16) NA 0 NA 3.343 1 NA NA NA NA NA LTS-030 chr8 33354739 35453140 2098402 * c(UNC5D, DUSP26, RNF122, TTI2, MAK16) NA 0 NA 1.50514548208888 240 1.10224654008484 7 NA NA -5.76842136803241 LTS-030 chr8 35453141 36925385 1472245 * c(UNC5D, KCNU1) 0.448 1 NA 0.665358647993472 385 0.306894557924121 2 2 0 -5.86682313640296 LTS-030 chr8 36925386 37333555 408170 * character(0) NA 0 NA 0.514172711486193 9 0.0517287261694226 2 NA NA -7.37091199128917 LTS-030 chr8 37333556 37373984 40429 * character(0) NA 0 NA 2.176 1 NA NA NA NA NA LTS-030 chr8 37373985 41563872 4189888 * c(LOC100130964, ERLIN2, PROSC, GOT1L1, GPAT4, LETM2, ADRB3, NKX6-3, ADAM3A, IDO2, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM2, ADAM5, ADGRA2, LSM1, ANK1, RNF5P1, IDO1, C8orf86, GOLGA7, WHSC1L1, BRF2, C8orf4, PLEKHA2, MIR486-1, SFRP1, STAR, TACC1, LOC728024, ZMAT4, ZNF703, RAB11FIP1, TM2D2, GINS4, PLPP5, ADAM18, ADAM9, ASH2L, BAG4) 0.409313742957092 52 0.0681573571917699 0.899361211923434 4075 0.458014507726346 4 2 2 -6.97398453320779 LTS-030 chr8 41563873 41566232 2360 * c(NKX6-3, ANK1) NA 0 NA 1.36 1 NA NA NA NA NA LTS-030 chr8 41566233 41790935 224703 * c(NKX6-3, ANK1, KAT6A) 0.387287992421499 3 0.00635085296108589 1.37561943434224 195 0.682712441608889 8 5 3 -6.7577549610604 LTS-030 chr8 41790936 43056513 1265578 * c(MIR4469, AP3M2, CHRNB3, SMIM19, HGSNAT, FNTA, DKK4, IKBKB, PLAT, POLB, THAP1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.432167811260324 16 0.0489863501396052 0.987860356701486 1526 0.545360322028951 4 2 2 -6.74386333371374 LTS-030 chr8 43056514 43212050 155537 * c(HGSNAT, POTEA) NA 0 NA 1.01519441553651 75 0.329463582588808 4 NA NA -5.76460564229437 LTS-030 chr8 47752736 48955421 1202686 * c(LOC100287846, CEBPD, SPIDR, MCM4, LINC00293, PRKDC, UBE2V2) NA 0 NA 1.04239215727125 899 0.510359506509129 4 NA NA -5.76918194091186 LTS-030 chr8 48955422 48955552 131 * UBE2V2 NA 0 NA 0.769 1 NA NA NA NA NA LTS-030 chr8 48955553 49988587 1033035 * c(C8orf22, SNAI2, UBE2V2, EFCAB1) 0.453 1 NA 0.866385177381367 231 0.453768428592301 3 3 0 -5.78383786619847 LTS-030 chr8 49988588 54879187 4890600 * c(PCMTD1, PXDNL, NPBWR1, FAM150A, C8orf22, OPRK1, ATP6V1H, SNTG1, TCEA1, RGS20, ST18, RB1CC1) 0.410696503793733 32 0.0601269825640541 0.877041299372696 1222 0.458252318244587 3 2 1 -7.07257397093196 LTS-030 chr8 54879188 54880767 1580 * TCEA1 NA 0 NA 0.372404221811958 43 0.208355529271659 1 NA NA -5.76450805034901 LTS-030 chr8 54880768 54882783 2016 * TCEA1 NA 0 NA 0.671 1 NA NA NA NA NA LTS-030 chr8 54882784 71550058 16667275 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, NCOA2, ARFGEF1, COPS5, XKR4, C8orf34, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SULF1, TRAM1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPL15, LOC401463, NA NA NA NA NA NA NA NA NA LTS-030 LYN, MIR124-2, MOS, ASPH, MYBL1, LACTB2, PDE7A, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, CPA6, RAB2A, RP1, RPS20, SDCBP, PRDM14, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, CSPP1, VCPIP1, PREX2, SLCO5A1, NSMAF, TRIM55, DNAJC5B, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.435561432857783 111 0.0548919570167337 0.895433920932306 6900 0.477843584075445 4 2 2 -7.22658853556353 LTS-030 NA NA NA NA LTS-030 chr8 71550059 71550708 650 * c(LACTB2-AS1, LACTB2) 0.39 1 NA 0.806980856226201 5 0.315991613812772 3 3 0 -5.76441048195792 LTS-030 chr8 71550709 72946127 1395419 * c(MSC-AS1, EYA1, LACTB2-AS1, XKR9, LACTB2, TRPA1, MSC) 0.323783713469224 7 0.0770710865432192 0.966560978990468 438 0.436790790528906 4 3 1 -6.79769397388343 LTS-030 chr8 72946128 72946505 378 * c(MSC-AS1, TRPA1) NA 0 NA 2.458 1 NA NA NA NA NA LTS-030 chr8 72946506 95541575 22595070 * c(C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, MIR2052, MIR378D2, MIR4661, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, WWP1, STMN2, SLC26A7, FAM92A1, DCAF4L2, RALYL, RDH10, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, STAU2, TRIQK, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, C8orf87, RBM12B, NA NA NA NA NA NA NA NA NA LTS-030 LOC392232, C8orf59, MMP16, MIR2052HG, FLJ46284, NBN, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, TMEM70, UBE2W, RBM12B-AS1, TMEM55A, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, ZFHX4, CRISPLD1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CHMP4C, KCNB2) 0.372958499255527 119 0.0642629384078645 1.12282701960124 7907 0.719813970464528 5 3 2 -7.04985515942039 LTS-030 NA NA NA NA LTS-030 chr8 95541576 95543135 1560 * KIAA1429 NA 0 NA 2.35 1 NA NA NA NA NA LTS-030 chr8 95543136 99467856 3924721 * c(LOC100288748, MIR3150A, LOC100500773, MIR3150B, C8orf37-AS1, RIDA, CPQ, POP1, NDUFAF6, C8orf37, ERICH5, KIAA1429, SNORA72, DPY19L4, KCNS2, GDF6, MATN2, MTERF3, ESRP1, LAPTM4B, INTS8, RPL30, LINC01298, SDC2, STK3, UQCRB, PLEKHF2, NIPAL2, TSPYL5, CCNE2, MTDH, TP53INP1, PTDSS1) 0.374142807278642 31 0.101801694220855 1.24888931552329 2469 0.767182481008444 6 4 2 -6.80388639914439 LTS-030 chr8 99467857 100287485 819629 * c(OSR2, VPS13B, STK3) NA 0 NA 1.2093685536258 219 0.566488643584576 5 NA NA -5.76449130469874 LTS-030 chr8 100287486 100396351 108866 * VPS13B NA 0 NA 0.631 1 NA NA NA NA NA LTS-030 chr8 100396352 100443679 47328 * VPS13B 0.174 1 NA 0.604124316729362 11 0.173087418795979 2 2 0 -5.76448434220337 LTS-030 chr8 100443680 100847986 404307 * c(MIR875, VPS13B, MIR599) 0.217718253929981 2 0.0325269119345812 0.513158876700558 197 0.222237026783926 1 1 0 -7.51706447075445 LTS-030 chr8 100847987 100860975 12989 * VPS13B NA 0 NA 0.975 1 NA NA NA NA NA LTS-030 chr8 100860976 103662529 2801554 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.0802248745929627 7 0.0426374527962492 0.79985391761674 1729 0.524958863158123 4 4 0 -7.13488720181817 LTS-030 chr8 103662530 103662535 6 * KLF10 NA 0 NA 1.778 1 NA NA NA NA NA LTS-030 chr8 103662536 103820068 157533 * KLF10 NA 0 NA 1.41521816657021 73 0.526245354140962 6 NA NA -5.76444396804037 LTS-030 chr8 103820069 103838513 18445 * character(0) NA 0 NA 0.549 1 NA NA NA NA NA LTS-030 chr8 103838514 113871516 10033003 * c(MIR2053, MIR3151, BAALC-AS1, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, AZIN1, ATP6V1C1, OXR1, SYBU, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.12020733325655 62 0.0631083214218309 0.737481390188917 3344 1.38504914840654 3 3 0 -6.75511153530154 LTS-030 chr8 113871517 113933830 62314 * CSMD3 NA 0 NA 0.908 1 NA NA NA NA NA LTS-030 chr8 113933831 116635942 2702112 * c(CSMD3, TRPS1) 0.141538572640145 5 0.0260825612239289 0.785887030772819 311 0.35726182655935 3 3 0 -7.0073147302495 LTS-030 chr8 116635943 117858350 1222408 * c(LINC00536, RAD21, TRPS1, UTP23, EIF3H) 0.167 1 NA 0.957392171733972 213 4.44407252276641 4 4 0 -5.76448054232881 LTS-030 chr8 117858351 121483019 3624669 * c(MIR3610, COLEC10, MAL2, SLC30A8, EXT1, MTBP, MRPL13, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, DEPTOR, TAF2, COL14A1, DSCC1, MED30) 0.0866205956196693 29 0.0539719868955936 0.848595406391375 1669 0.404387188256237 3 3 0 -7.0495858760044 LTS-030 chr8 121483020 122625388 1142369 * c(MTBP, HAS2, SNTB1) 0.282 1 NA 0.804411569966547 211 0.369116321092624 3 3 0 -5.76460652134462 LTS-030 chr8 122625389 123682818 1057430 * c(HAS2, HAS2-AS1) NA 0 NA 0.593954675834026 71 0.332210666235393 2 NA NA -5.76478995965193 LTS-030 chr8 123682819 123683581 763 * character(0) NA 0 NA 1.399 1 NA NA NA NA NA LTS-030 chr8 123683582 139833642 16150061 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, COL22A1, ZHX2, EFR3A, LRRC6, NSMCE2, LINC01591, ATAD2, ASAP1-IT1, ANXA13, KLHL38, KCNQ3, MIR30B, MIR30D, FER1L6-AS1, MYC, NDUFB9, ASAP1, FAM135B, PHF20L1, FAM49B, POU5F1B, TRMT12, NA NA NA NA NA NA NA NA NA LTS-030 WDYHV1, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, FER1L6, SQLE, TG, CASC8, LINC00977, OC90, DERL1, TATDN1, C8orf76, FAM83A, WISP1, TBC1D31, HPYR1, MTSS1, KIAA0196) 0.382117424107156 142 0.084559170533695 1.37231260228685 5867 0.678592186345758 6 4 2 -6.79748842840853 LTS-030 NA NA NA NA LTS-030 chr8 139833643 139838869 5227 * COL22A1 NA 0 NA 2.164 1 NA NA NA NA NA LTS-030 chr8 139838870 141840645 2001776 * c(COL22A1, AGO2, KCNK9, CHRAC1, PTK2, TRAPPC9) 0.37436853077143 24 0.0581867153272954 1.78418656304497 749 0.775822891789542 8 5 3 -6.76045706043293 LTS-030 chr8 141840646 141994240 153595 * PTK2 0.336 1 NA 1.64200013699444 59 1.06370944682226 7 7 0 -5.76446018484868 LTS-030 chr8 141994241 143866379 1872139 * c(LOC100288181, MIR4472-1, PTP4A3, LYPD2, TSNARE1, DENND3, ARC, GPR20, MROH5, THEM6, LY6K, SLURP1, SLC45A4, PTK2, ADGRB1, LINC00051, LYNX1, LINC01300, PSCA, LY6D, JRK) 0.370793268835578 42 0.0374438255215251 1.73250332272669 1514 0.801846920700584 8 5 3 -6.84332642796419 LTS-030 chr8 143866380 144032148 165769 * c(CYP11B1, CYP11B2, GML, LY6D) 0.330229595326792 6 0.0689446638012448 1.1457958027723 237 0.611267719218341 7 5 2 -6.80402950308761 LTS-030 chr8 144032149 144063664 31516 * LOC100133669 NA 0 NA 1.737 1 NA NA NA NA NA LTS-030 chr8 144063665 146230859 2167195 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, NA NA NA NA NA NA NA NA NA LTS-030 SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, MIR661, TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.364230339216227 132 0.0766925013547788 1.79485531499535 6242 0.876324218724122 9 6 3 -6.77572587645234 LTS-030 NA NA NA NA LTS-030 chr8 146230860 146280905 50046 * c(ZNF252P-AS1, C8orf33) NA 0 NA 1.68296843234292 61 0.667349430839294 7 NA NA -5.7645748880834 LTS-030 chr9 14732 214804 200073 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.092 1 NA 0.905039507627575 45 0.781416055968427 4 4 0 -5.76636667760158 LTS-030 chr9 214805 3395642 3180838 * c(DMRT2, C9orf66, KCNV2, DMRT1, KANK1, VLDLR-AS1, DMRT3, RFX3, SMARCA2, VLDLR, DOCK8, PUM3) 0.0845513040956124 25 0.0518235146112908 0.853705543291462 1466 0.454805721847935 4 4 0 -7.00059920777861 LTS-030 chr9 3395643 3452381 56739 * RFX3 NA 0 NA 3.5 1 NA NA NA NA NA LTS-030 chr9 3452382 14082238 10629857 * c(LINC00583, MIR4665, RCL1, INSL6, UHRF2, KIAA2026, GLIS3, KDM4C, MLANA, RANBP6, GLDC, LURAP1L, CD274, INSL4, JAK2, LINC01235, PLPP6, MIR101-2, NFIB, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, RFX3, RLN1, RLN2, SLC1A1, TYRP1, ERMP1, PDCD1LG2, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261) 0.0633998791438747 51 0.024996564469825 1.32086047136815 3251 0.682211805550097 6 6 0 -6.82898593035855 LTS-030 chr9 14082239 14398521 316283 * NFIB 0.057 1 NA 2.10312122675534 221 1.25708521669786 10 10 0 -5.76467164532569 LTS-030 chr9 14398522 17466688 3068167 * c(C9orf92, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, NFIB, BNC2, CNTLN, SNAPC3, CER1) 0.0617903052174949 9 0.043038096818723 1.35073052622891 1377 0.645765808551278 6 6 0 -6.76365995610323 LTS-030 chr9 17466689 17466787 99 * CNTLN NA 0 NA 1.089 1 NA NA NA NA NA LTS-030 chr9 17466788 21351324 3884537 * c(MIR3152, MIR4473, MIR4474, RRAGA, PLIN2, SAXO1, SLC24A2, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, MLLT3, HAUS6, CNTLN, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SH3GL2, SCARNA8, ADAMTSL1) 0.0892758646568513 32 0.0611608716234647 0.887955794785955 2033 0.520585734041421 4 4 0 -6.86668146970557 LTS-030 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.426 1 NA NA NA NA NA LTS-030 chr9 21367330 21441196 73867 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.021 1 NA 0.3920240842992 78 0.247901315589616 1 1 0 -5.76458653786582 LTS-030 chr9 21441197 21441212 16 * IFNA1 NA 0 NA 1.097 1 NA NA NA NA NA LTS-030 chr9 21441213 32630030 11188818 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, TOPORS, CDKN2A, CDKN2B, TAF1L, LINC00032, LINGO2, ELAVL2, C9orf72, DDX58, TUSC1, IFNE, IFNA1, LINC01242, MIR31, LINC01239, MTAP, NDUFB6, ACO1, CDKN2A-AS1, EQTN, MIR31HG, IFNK, DMRTA1, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.0825678568432998 35 0.0482333613058135 1.05696136401517 2117 0.541100201254413 4 4 0 -6.87000843951482 LTS-030 chr9 32630031 32984899 354869 * c(TAF1L, TMEM215, APTX) 0.0577311028972896 3 0.010816653826392 0.713384688067819 204 0.31528050414025 7 7 0 -7.96308029375005 LTS-030 chr9 32984900 32986081 1182 * APTX NA 0 NA 2.932 1 NA NA NA NA NA LTS-030 chr9 32986082 33524740 538659 * c(B4GALT1, SPINK4, DNAJA1, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, CHMP5, APTX, SMU1, BAG1, NOL6) 0.104413836903772 11 0.0879634221501394 1.2155789540904 909 0.708974423221536 4 4 0 -6.75985366421355 LTS-030 chr9 33524741 33528735 3995 * ANKRD18B NA 0 NA 0.769 1 NA NA NA NA NA LTS-030 chr9 33528736 33674789 146054 * c(PTENP1, ANXA2P2, ANKRD18B) 0.0931680158504018 4 0.0340881210981186 0.686178154272878 158 0.463791413469041 4 4 0 -6.80676169421322 LTS-030 chr9 33674790 33675629 840 * PTENP1 0.116 1 NA 0.413538720588796 15 0.119467867766071 1 1 0 -5.76446049736332 LTS-030 chr9 33675630 33676384 755 * PTENP1 NA 0 NA 0.578308058857467 16 0.139647890543801 2 NA NA -5.76443826874031 LTS-030 chr9 33676385 33797999 121615 * c(PTENP1, PRSS3) 0.415617193397147 9 0.0990807751281751 1.14886398588564 40 0.412266232129004 5 3 2 -6.73524881221117 LTS-030 chr9 33798000 33917498 119499 * c(UBE2R2, PRSS3) 0.071 1 NA 1.27803916972773 42 1.1966469870494 5 5 0 -5.76460575632301 LTS-030 chr9 33917499 34723606 806108 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, KIAA1161, CCL19, CCL21, C9orf24) 0.0833007143819257 33 0.0338231810413742 1.16000487694986 1490 0.526515722685025 5 5 0 -6.73559686313713 LTS-030 chr9 34723607 34723713 107 * FAM205A NA 0 NA 0.544 1 NA NA NA NA NA LTS-030 chr9 34723714 34726361 2648 * FAM205A 0.273385872047549 8 0.139109412231626 0.401187551889355 77 0.244570541621673 1 1 0 -6.75272923537914 LTS-030 chr9 34726362 34833277 106916 * c(FAM205A, FAM205BP) 0.137232307717272 5 0.031093407661432 0.833569983296629 92 0.430758371209356 3 3 0 -6.84647927207341 LTS-030 chr9 34833278 34833287 10 * FAM205BP NA 0 NA 0.521 1 NA NA NA NA NA LTS-030 chr9 34833288 34835861 2574 * FAM205BP 0.392044489859349 5 0.146138632811451 0.425821576714048 85 0.31082243077582 3 2 1 -6.74905987894793 LTS-030 chr9 34835862 34835893 32 * FAM205BP NA 0 NA 0.844 1 NA NA NA NA NA LTS-030 chr9 34835894 35910730 1074837 * c(MIR4667, CREB3, UNC13B, C9orf131, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.0830200640733303 42 0.0304786915531507 1.18326549571604 2794 0.542892831331517 5 5 0 -6.73380834062016 LTS-030 chr9 35910731 35957053 46323 * LINC00961 NA 0 NA 0.667 1 NA NA NA NA NA LTS-030 chr9 35957054 37006631 1049578 * c(GNE, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, PAX5, OR2S2, RECK, CCIN, MELK) 0.0985272344987845 19 0.0492119179213438 0.975090468340847 956 0.459284066975471 4 4 0 -6.73495114844451 LTS-030 chr9 37006632 37015041 8410 * PAX5 NA 0 NA 0.308 1 NA NA NA NA NA LTS-030 chr9 37015042 38527470 1512429 * c(EBLN3P, TRMT10B, ALDH1B1, FRMPD1, FBXO10, IGFBPL1, TOMM5, PAX5, EXOSC3, POLR1E, SHB, DCAF10, ZCCHC7, SLC25A51, GRHPR, ZBTB5) 0.171515239629479 16 0.0656459887071048 0.579502913736981 1070 0.336153036414388 2 2 0 -6.74749795948537 LTS-030 chr9 38527471 38615983 88513 * c(FAM95C, ANKRD18A) 0.208576950855541 4 0.0871932719116943 0.30553118234675 129 0.160524991488683 1 1 0 -6.99533230206962 LTS-030 chr9 38615984 38620150 4167 * ANKRD18A NA 0 NA 0.788 1 NA NA NA NA NA LTS-030 chr9 38620151 38624500 4350 * c(FAM201A, ANKRD18A) 0.166958444765646 4 0.0134752860204648 0.617855196462664 70 0.286787731068662 2 2 0 -6.74540385137956 LTS-030 chr9 38624501 39140675 516175 * CNTNAP3 NA 0 NA 0.7336738895579 19 0.411915714140108 3 NA NA -5.7778166937811 LTS-030 chr9 39140676 39172772 32097 * CNTNAP3 NA 0 NA 0.236 1 NA NA NA NA NA LTS-030 chr9 39172773 44175697 5002925 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) NA 0 NA 0.291545656231969 109 0.164686937738771 1 NA NA -10.3333538061587 LTS-030 chr9 65602571 68415373 2812803 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.337519573995532 24 0.113253459172304 1.49296581297854 59 1.18989029154077 6 4 2 -6.75430717958216 LTS-030 chr9 68415374 70971798 2556425 * c(FRG1HP, LOC100133920, FOXD4L3, LOC440896, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.333420098409931 4 0.113637948473797 0.593763949582291 29 0.399985258349044 2 1 1 -7.20847584547521 LTS-030 chr9 70971799 71145379 173581 * c(PGM5, PGM5-AS1) 0.1 1 NA 0.540732824298952 66 0.27250461598708 2 2 0 -5.77896819308969 LTS-030 chr9 71145380 74764603 3619224 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf57, C9orf85, C9orf135, TMEM252, SMC5, TMEM2, FXN, MAMDC2, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PGM5, PRKACG, KLF9, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.173310808758043 25 0.0602643343943995 0.57518602014356 1983 0.28378122654955 2 2 0 -6.78769862632504 LTS-030 chr9 74764604 74764627 24 * GDA 0.119 1 NA 1.952 1 NA NA NA NA NA LTS-030 chr9 74764628 75369859 605232 * c(TMC1, ZFAND5, GDA) 0.127534903773739 6 0.075616797075782 0.956372469516778 301 0.420605555861145 3 3 0 -6.79990172774419 LTS-030 chr9 75369860 75387292 17433 * TMC1 NA 0 NA 0.378 1 NA NA NA NA NA LTS-030 chr9 75387293 79319762 3932470 * c(TMC1, CARNMT1, TRPM6, PRUNE2, ALDH1A1, GCNT1, OSTF1, ANXA1, PCSK5, NMRK1, C9orf40, RFK, RORB, RPSAP9) 0.19290744603668 24 0.0778680484602927 0.552765681614971 1597 0.282804729383156 2 2 0 -6.99209111912665 LTS-030 chr9 79319763 79469047 149285 * c(PRUNE2, PCA3) 0.174243506861069 11 0.0872090487381796 0.397972478587295 177 0.164554375203341 1 1 0 -7.13556546424784 LTS-030 chr9 79469048 84530373 5061326 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, PSAT1, SPATA31D5P, FOXB2, TLE1, TLE4, CEP78, GNA14) 0.168153255177528 16 0.0924768214202889 0.634825310370155 1473 0.346609596620429 2 2 0 -6.81876403741011 LTS-030 chr9 84530374 84530454 81 * SPATA31D5P NA 0 NA 0.297 1 NA NA NA NA NA LTS-030 chr9 84530455 85605423 1074969 * c(RASEF, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) NA 0 NA 0.404456393407322 223 0.156012311671106 1 NA NA -5.77083593662948 LTS-030 chr9 85605424 85607812 2389 * RASEF NA 0 NA 0.527 1 NA NA NA NA NA LTS-030 chr9 85607813 97061995 11454183 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, CTSL, CTSLP8, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, DAPK1, ZNF169, ECM2, S1PR3, SUSD3, FAM120A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, UBQLN1, HNRNPK, IARS, LINC01501, NA NA NA NA NA NA NA NA NA LTS-030 LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR7-1, IDNK, LOC440173, SPATA31C1, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, C9orf64, CARD19, FGD3) 0.160904880951853 75 0.0646491487371058 0.587276356568672 6507 0.311200605215703 2 2 0 -6.76215250921426 LTS-030 NA NA NA NA LTS-030 chr9 97061996 97078878 16883 * ZNF169 NA 0 NA 0.294810327643982 59 0.126978479241688 1 NA NA -5.82065791075653 LTS-030 chr9 97078879 97079223 345 * character(0) NA 0 NA 0.534 1 NA NA NA NA NA LTS-030 chr9 97079224 98717058 1637835 * c(LINC00476, LOC100132077, MIR2278, MIR3074, LOC100507346, FANCC, FBP1, ERCC6L2, MIR23B, NUTM2F, PTCH1, MFSD14B, C9orf3, FBP2) 0.166059315691317 16 0.0550696150340639 0.655497908478957 924 0.385876028748228 2 2 0 -6.78677120035718 LTS-030 chr9 98717059 99925094 1208036 * c(LOC100132781, LINC00092, SLC35D2, CTSV, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ZNF510, HABP4, HSD17B3, GAS2L1P2, ERCC6L2, LOC441454, LOC441455, NUTM2G, MFSD14C, CDC14B) 0.121261507292056 6 0.0631434873918126 0.537257969571938 1067 0.285905763468285 2 2 0 -7.1107375871392 LTS-030 chr9 99925095 99959512 34418 * character(0) NA 0 NA 0.182 1 NA NA NA NA NA LTS-030 chr9 99959513 99961959 2447 * character(0) 0.465 1 NA 0.166979662515979 46 0.11060245212227 0 0 0 -5.76781030580863 LTS-030 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 0.936 1 NA NA NA NA NA LTS-030 chr9 100041691 106903670 6861980 * c(CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, GRIN3A, COL15A1, CYLC2, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.178558855216019 96 0.0849069918132301 0.556326262298714 4124 0.29641665161643 2 2 0 -6.99175611224663 LTS-030 chr9 106903671 107266448 362778 * SMC2 NA 0 NA 0.303 1 NA NA NA NA NA LTS-030 chr9 107266449 107457836 191388 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.187709135632423 6 0.0492287179059811 0.347663060391499 201 0.112165975321844 1 1 0 -7.68688324086415 LTS-030 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.355 1 NA NA NA NA NA LTS-030 chr9 107509996 108234328 724333 * c(ABCA1, SLC44A1, NIPSNAP3A, NA, NIPSNAP3B, FSD1L) 0.197079567872999 6 0.0725187332119547 0.64132037373126 747 0.323698537245622 2 2 0 -6.86748841140308 LTS-030 chr9 108234329 108241521 7193 * FSD1L NA 0 NA 0.335 1 NA NA NA NA NA LTS-030 chr9 108241522 109697954 1456433 * c(MIR548Q, FKTN, TMEM38B, ZNF462, TAL2, FSD1L) 0.200112770698186 10 0.0970086479535602 0.489903463100627 653 0.215131916146368 2 2 0 -7.48851885603954 LTS-030 chr9 109697955 109701140 3186 * c(MIR548Q, ZNF462) NA 0 NA 0.673 1 NA NA NA NA NA LTS-030 chr9 109701141 113128560 3427420 * c(MIR548Q, ACTL7B, ACTL7A, AKAP2, PALM2, TMEM245, FRRS1L, TXNDC8, C9orf152, MIR32, PALM2-AKAP2, EPB41L4B, FAM206A, PTPN3, ZNF462, RAD23B, TXN, SVEP1, IKBKAP, CTNNAL1, KLF4) 0.165370216411686 29 0.0827624203766479 0.628751642403486 1924 1.74217962920996 2 2 0 -6.7346536283361 LTS-030 chr9 113128561 113128675 115 * SVEP1 NA 0 NA 0.254 1 NA NA NA NA NA LTS-030 chr9 113128676 114146801 1018126 * c(LPAR1, KIAA0368, OR2K2, MUSK, SVEP1) 0.140323136491142 12 0.0500260538180463 0.48192472647773 710 0.21352324301912 2 2 0 -7.4491720957351 LTS-030 chr9 114146802 116360007 2213206 * c(FAM225B, MIR3134, MIR4668, WDR31, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, ALAD, PTGR1, FKBP15, KIAA0368, CDC26, C9orf43, GNG10, FAM225A, SNX30, POLE3, BSPRY, DNAJC25, DNAJC25-GNG10, SLC46A2, INIP, RGS3, SUSD1, LRRC37A5P, UGCG, ZFP37, HDHD3, HSDL2, PRPF4, PTBP3) 0.156143052701157 49 0.0904569418747579 0.617638437704764 3063 0.336334498908456 2 2 0 -6.75004662464395 LTS-030 chr9 116360008 117074810 714803 * c(KIF12, ZNF618, AMBP, RGS3, MIR455, COL27A1) 0.0921588488175788 15 0.0375493326299201 1.08945255180512 680 0.473223175369728 4 4 0 -6.76592239715813 LTS-030 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.055 1 NA NA NA NA NA LTS-030 chr9 117085363 117092234 6872 * c(ORM1, ORM2) NA 0 NA 0.197088427826184 50 0.148185351392595 0 NA NA -5.76441141997145 LTS-030 chr9 117092235 122275314 5183080 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.112934331582972 43 0.0581505949612913 0.930765659328137 1700 0.477822122896569 4 4 0 -6.83744157304987 LTS-030 chr9 122275315 122285148 9834 * character(0) NA 0 NA 0.575 1 NA NA NA NA NA LTS-030 chr9 122285149 123920410 1635262 * c(LOC100288842, CNTRL, MEGF9, PSMD5-AS1, PHF19, FBXW2, MIR147A, CDK5RAP2, PSMD5, TRAF1, C5) 0.175080027611213 25 0.0868030913428011 0.599460410228775 1191 0.273998219236313 2 2 0 -6.74108770657851 LTS-030 chr9 123920411 123921096 686 * CNTRL NA 0 NA 0.75 1 NA NA NA NA NA LTS-030 chr9 123921097 124855850 934754 * c(CNTRL, DAB2IP, TTLL11, STOM, GGTA1P, GSN, RAB14) 0.153233895352377 14 0.0896106658192619 0.82694003688165 809 0.413629231554295 3 3 0 -6.80160937835849 LTS-030 chr9 124855851 124882242 26392 * TTLL11 NA 0 NA 0.436 1 NA NA NA NA NA LTS-030 chr9 124882243 125273502 391260 * c(MIR4478, MORN5, LHX6, OR1J2, OR1J1, NDUFA8, PTGS1, MRRF, RBM18) 0.158585398614006 6 0.0633364034343599 0.576601503169234 504 0.218335372407015 2 2 0 -6.74624413344278 LTS-030 chr9 125273503 125551342 277840 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1B1, OR1L6, OR5C1) 0.160430374047643 21 0.0535424175415201 0.400267221115574 309 0.22029734884879 2 2 0 -7.24862634589205 LTS-030 chr9 125551343 130211764 4660422 * c(LOC100129034, MIR181A2HG, RABEPK, ZBTB6, NEK6, RPL35, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, SNORA65, GOLGA1, GPR21, CRB2, SCAI, SLC2A8, HSPA5, ADGRD2, OR5C1, OR1K1, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PDCL, PBX3, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, RPL12, NRON, SNORD90, MIR601, ZNF79, MAPKAP1, MIR600HG, ARPC5L, GARNL3, MVB12B, LHX2, RALGPS1) 0.158284461877353 59 0.0615485107055888 0.60597307432278 4411 0.319379486340386 2 2 0 -6.74409664983715 LTS-030 chr9 130211765 130211972 208 * RPL12 NA 0 NA 0.811 1 NA NA NA NA NA LTS-030 chr9 130211973 131891302 1679330 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, MIR3960, MIR219B, MIR4672, CDK9, ZER1, SLC27A4, SLC25A25, CRAT, PTRH1, PIP5KL1, TTC16, DNM1, ENDOG, ENG, AK1, NAIF1, DOLK, NUP188, FPGS, PHYHD1, CIZ1, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA2, CFAP157, PKN3, ST6GALNAC6, SWI5, PTGES2-AS1, LCN2, FAM102A, MIR199B, MIR219A2, ODF2, COQ4, CERCAM, SPOUT1, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, RPL12, NA NA NA NA NA NA NA NA NA LTS-030 SET, FAM129B, SPTAN1, STXBP1, C9orf16, PTGES2, URM1, ZDHHC12, MIGA2, DPM2, KYAT1, WDR34, LRSAM1) 0.162532594085137 96 0.0635196327917597 0.680368691766403 4813 0.324891354182291 2 2 0 -6.88572123272805 LTS-030 NA NA NA NA LTS-030 chr9 131891303 133339609 1448307 * c(LINC00963, USP20, ASB6, TOR1A, FNBP1, NCS1, TOR1B, NTMT1, C9orf50, IER5L, C9orf106, ASS1, PRRX2, C9orf78, PTPA, GPR107, PTGES) 0.160580076201664 11 0.0571368373452555 0.75897547273315 1555 0.322810767552986 3 3 0 -6.99651150672755 LTS-030 chr9 133339610 139221662 5882053 * c(LINC01502, RNU6ATAC, LOC100272217, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, LAMC3, UBAC1, OLFM1, CEL, CELP, POMT1, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, NACC2, C9orf116, DBH-AS1, CAMSAP1, C9orf62, AK8, DBH, STKLD1, QSOX2, SARDH, FCN1, FCN2, SETX, EXOSC2, ABL1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, NA NA NA NA NA NA NA NA NA LTS-030 SNORD24, ABO, FAM78A, RAPGEF1, OBP2B, OBP2A, QRFP, GLT6D1, CFAP77, TMEM8C, LCN9, LCN1, LOC401557, SOHLH1, ASS1, PAEP, MRPS2, BARHL1, REXO4, KCNT1, RALGDS, PRDM12, RPL7A, RXRA, FAM163B, DDX31, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, TTF1, VAV2, BRD3, NUP214, LHX3, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, C9orf69, GTF3C5, GTF3C4, MED27, ADAMTSL2, PPP1R26) 0.173006559045375 191 0.0678439917724461 0.634429495056822 7789 0.3923918271093 2 2 0 -6.81692659895211 LTS-030 NA NA NA NA LTS-030 chr9 139221663 139752742 531080 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, AGPAT2, SDCCAG3, LCN8, FAM69B, C9orf163, MAMDC4, LCN6, PMPCA, GPSM1, DKFZP434A062, PHPT1, LCN15, C9orf172, MIR126, LCN10, NOTCH1, EGFL7, RABL6, INPP5E, CARD9, SNAPC4, SNORA17A, SNORA17B, DNLZ, CCDC183, SNHG7, TMEM141, SEC16A) 0.145954987994316 72 0.0524764795662612 0.711387773799602 2073 0.374558993233056 3 3 0 -6.87054225571938 LTS-030 chr9 139752743 139760806 8064 * c(MAMDC4, EDF1) NA 0 NA 0.633914870085622 65 0.27082290640678 2 NA NA -5.76462430163597 LTS-030 chr9 139760807 139780852 20046 * TRAF2 NA 0 NA 1.55 1 NA NA NA NA NA LTS-030 chr9 139780853 139820421 39569 * c(MIR4479, TRAF2) 0.462 1 NA 1.29758652494449 60 0.543666376127008 6 6 0 -5.76488411376822 LTS-030 chr9 139820422 141069927 1249506 * c(STPG3-AS1, MAN1B1-AS1, MIR3621, TUBB4B, NOXA1, MAN1B1, ZMYND19, SLC34A3, ABCA2, FUT7, NELFB, NSMF, NDOR1, LCN12, C9orf142, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, LCNL1, C9orf139, FAM166A, STPG3, NRARP, FBXW5, TOR4A, EXD3, NPDC1, PTGDS, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, TRAF2, RNF208, C8G, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, SAPCD2, CLIC3, UAP1L1, ARRDC1, DPH7, TMEM203, NA NA NA NA NA NA NA NA NA LTS-030 ENTPD2) 0.448913420705973 57 0.0527974922507682 1.16714452162369 3515 0.608767316324792 4 2 2 -6.80360613504484 LTS-030 NA NA NA NA LTS-030 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.996528063838146 7 0.796025514068248 4 NA NA -5.76441015562343 LTS-030 chr10 94832 95261 430 * TUBB8 0.305 1 NA 3.25166824200963 5 0.78293250028339 15 15 0 -5.7644102164977 LTS-030 chr10 95262 1779498 1684237 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, LINC00200, PRR26, IDI2-AS1, ADARB2-AS1, IDI2) 0.266875369338632 23 0.0535407568887604 1.97137059397933 1257 0.900463440907507 8 6 2 -6.76617201923021 LTS-030 chr10 1779499 3124516 1345018 * c(ADARB2, LINC00700, LINC00701, PFKP) 0.493 1 NA 1.27543814948335 19 0.399242682210013 5 5 0 -5.78286618884072 LTS-030 chr10 3124517 3143608 19092 * PFKP NA 0 NA 1.94735590819558 19 0.7369679783882 9 NA NA -5.76442687145111 LTS-030 chr10 3143609 3143614 6 * PFKP NA 0 NA 1.382 1 NA NA NA NA NA LTS-030 chr10 3143615 4884057 1740443 * c(LINC00704, PITRM1-AS1, PITRM1, KLF6, LINC00705, PFKP, AKR1E2) 0.433058392141128 57 0.0661847967307881 1.09790980379213 569 0.511337729740128 4 2 2 -6.77193882043389 LTS-030 chr10 4884058 4884560 503 * AKR1E2 NA 0 NA 0.376 1 NA NA NA NA NA LTS-030 chr10 4884561 5091015 206455 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.381566996991669 14 0.046515033609021 0.528378212619601 243 0.398232452788272 3 2 1 -6.88224919701264 LTS-030 chr10 5091016 5120124 29109 * AKR1C3 NA 0 NA 1.255 1 NA NA NA NA NA LTS-030 chr10 5120125 15556788 10436664 * c(PPIAP30, MIR1265, MIR3155A, LINC00707, MIR4480, MIR3155B, OPTN, NET1, RPP38, CELF2, AKR1C4, NUDT5, UCN3, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, AKR1C8P, IL2RA, IL15RA, ITIH2, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, NA NA NA NA NA NA NA NA NA LTS-030 CAMK1D, SFMBT2, DCLRE1C, MEIG1, SUV39H2, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, FAM107B, CCDC3, TAF3, FBXO18, RBM17, PRPF18, AKR1C3, CDC123, NMT2, USP6NL) 0.425288782251306 108 0.0550358107401746 1.12712136577663 5716 0.65435381232145 5 3 2 -6.83179115193964 LTS-030 NA NA NA NA LTS-030 chr10 15556789 17813397 2256609 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER) 0.3824578731588 30 0.0689319254397234 0.947686338572388 1380 0.455231670136521 3 2 1 -6.92670602724746 LTS-030 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.111 1 NA NA NA NA NA LTS-030 chr10 17842448 18196475 354028 * c(MRC1, NA, TMEM236) 0.208 1 NA 0.261566824946113 148 0.268061662975514 0 0 0 -5.98829883886881 LTS-030 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.434 1 NA NA NA NA NA LTS-030 chr10 18198201 25464459 7266259 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.403544706825519 43 0.0826459312043189 1.05889169611066 3091 0.626208771124551 4 2 2 -6.87549991782619 LTS-030 chr10 25464460 26790640 1326181 * c(GPR158-AS1, GAD2, MYO3A, APBB1IP, GPR158) 0.376254840867523 2 0.0947523086789974 0.832874897393801 548 0.409390932729486 3 2 1 -6.74153342866118 LTS-030 chr10 26790641 27822909 1032269 * c(ABI1, YME1L1, ANKRD26, RAB18, PDSS1, PTCHD3, LINC00202-1, LRRC37A6P, APBB1IP, LINC00264, LINC00202-2, MASTL, ACBD5) 0.426043091173328 43 0.0612770337204122 1.14110880671863 984 0.570239391222622 5 3 2 -6.77458519745901 LTS-030 chr10 27822910 36810838 8987929 * c(MIR938, LINC00838, LINC00837, MIR5586, LYZL2, MAP3K8, CREM, MPP7, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, RAB18, BAMBI, MKX, ITGB1, KIF5B, PTCHD3P1, WAC, ARMC4, MTPAP, PARD3, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ARHGAP12) 0.435818368944439 73 0.0561627642507032 0.917189186123577 3267 0.574346703026749 4 2 2 -6.85427534987185 LTS-030 chr10 36810839 36812926 2088 * character(0) NA 0 NA 0.336819936496951 51 0.166853186611323 1 NA NA -5.76567051573909 LTS-030 chr10 36812927 36813072 146 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-030 chr10 36813073 38740382 1927310 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, SEPT7P9, LINC00999, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.41720870606927 14 0.0650239600809992 0.871581280683039 635 0.416694752837316 4 2 2 -6.92075276397226 LTS-030 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 1.422 1 NA NA NA NA NA LTS-030 chr10 42379879 42379883 5 * character(0) 0.267 1 NA 2.353 1 NA NA NA NA NA LTS-030 chr10 42379884 44876391 2496508 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, ZNF32, ZNF33B, ZNF239, LINC00839, BMS1) 0.439912725548885 45 0.0501481844540797 0.885302783581403 1142 0.429682389968018 4 2 2 -6.85147389418541 LTS-030 chr10 44876392 44880336 3945 * CXCL12 NA 0 NA 1.371 1 NA NA NA NA NA LTS-030 chr10 44880337 45496375 616039 * c(C10orf10, C10orf25, TMEM72-AS1, CXCL12, TMEM72, ZNF22, RASSF4) 0.452558363744312 8 0.0446190222086628 1.24625662187297 291 0.410341989918901 6 3 3 -6.82085233910611 LTS-030 chr10 45496376 45498720 2345 * c(C10orf25, ZNF22) NA 0 NA 0.793 1 NA NA NA NA NA LTS-030 chr10 45498721 47756145 2257425 * c(RSU1P2, MIR3156-1, AGAP4, MARCH8, ALOX5, NA, FAM21C, PTPN20, ANKRD30BP3, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, ZNF22, OR13A1, SYT15, ZFAND4, GPRIN2) 0.358314682343019 24 0.0955660102695544 0.880633577878436 782 0.406417267677163 3 2 1 -6.82387914295389 LTS-030 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.13 1 NA NA NA NA NA LTS-030 chr10 47903105 48370581 467477 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.387867868315904 46 0.240889644387107 1 NA NA -5.76775131781691 LTS-030 chr10 48370582 51592690 3222109 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, MSMB, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.448513513580321 47 0.0340578492462772 0.90901590886913 2464 0.459955359117483 4 2 2 -6.86506966308627 LTS-030 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.353 1 NA NA NA NA NA LTS-030 chr10 51603249 51632958 29710 * c(TIMM23, NA, PARG) 0.401049328547582 4 0.0662243661099649 0.575248290022288 50 0.487981130866382 5 3 2 -6.78640659611252 LTS-030 chr10 51632959 59986974 8354016 * c(MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, NA, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, PARG) 0.432032233350658 35 0.0721057230330412 0.82075786070417 1302 0.419867340223981 3 2 1 -7.12472151775335 LTS-030 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.412 1 NA NA NA NA NA LTS-030 chr10 59997544 65384870 5387327 * c(MIR1296, MRLN, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, IPMK, LINC01553, ANK3, NRBF2, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.446130087323905 46 0.0544551093764219 0.990936768402507 3007 0.538766756050282 4 2 2 -6.74528520145316 LTS-030 chr10 65928619 69597950 3669332 * c(CTNNA3, ANXA2P3, LRRTM3, DNAJC12) 0.419190624973894 4 0.0628649345820068 0.682347460318874 241 0.281920585008844 2 1 1 -7.22871724185643 LTS-030 chr10 69597951 69644369 46419 * character(0) NA 0 NA 1.96 1 NA NA NA NA NA LTS-030 chr10 69644370 71211511 1567142 * c(DNA2, STOX1, ATOH7, SIRT1, TSPAN15, HERC4, KIF1BP, HK1, HNRNPH3, SRGN, RUFY2, CCAR1, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.451098914015764 33 0.0342121002429009 0.970327619158407 2308 0.519147629539542 4 2 2 -6.81473776592435 LTS-030 chr10 71211512 71243391 31880 * TSPAN15 NA 0 NA 1.859 1 NA NA NA NA NA LTS-030 chr10 71243392 74115088 2871697 * c(ANAPC16, COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, UNC5B-AS1, AIFM2, SGPL1, CHST3, SPOCK2) 0.454301075396211 113 0.0374776439892988 1.12532692254907 3322 0.554599497211206 4 2 2 -6.91312405350141 LTS-030 chr10 74115089 74127841 12753 * c(MIR1256, MICU1) 0.442 1 NA 0.938871834737649 17 0.18224781125128 4 4 0 -5.76532650495272 LTS-030 chr10 74127842 74671611 543770 * c(MIR1256, MIR4676, MICU1, OIT3, MCU) 0.323 1 NA 0.963461448312488 213 0.51731205058888 4 4 0 -5.76609884995186 LTS-030 chr10 74671612 74767695 96084 * c(OIT3, P4HA1, PLA2G12B) 0.225899771580509 10 0.0775382342962346 1.07469330610813 102 0.401853007990561 6 5 1 -6.77287152753834 LTS-030 chr10 74767696 75188040 420345 * c(ECD, MSS51, CFAP70, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16) 0.414 1 NA 0.901443417444009 771 0.546440188649765 4 4 0 -5.77348952513464 LTS-030 chr10 75188041 76994310 1806270 * c(CHCHD1, MSS51, COMTD1, ADK, SAMD8, USP54, FUT11, ZSWIM8, KAT6B, AP3M1, GLUD1P3, DUPD1, C10orf55, DUSP13, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.457376561395614 32 0.0425668354927985 1.0282117855779 2052 0.481028197813314 4 2 2 -6.85071612884347 LTS-030 chr10 76994311 77198150 203840 * c(ZNF503-AS2, COMTD1, ZNF503-AS1, ZNF503) NA 0 NA 1.74930922447342 148 0.978296262922145 8 NA NA -5.76452434363872 LTS-030 chr10 77198151 81274062 4075912 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, EIF5AL1, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.44243553310658 27 0.0640019586594872 1.08337101869045 1353 0.478454086459292 4 2 2 -6.8028737129018 LTS-030 chr10 81274063 81274077 15 * EIF5AL1 NA 0 NA 0.561 1 NA NA NA NA NA LTS-030 chr10 81274078 81286427 12350 * EIF5AL1 NA 0 NA 0.415948856252115 65 0.232248041723962 1 NA NA -5.76467123714546 LTS-030 chr10 81286428 81315599 29172 * character(0) NA 0 NA 0.925 1 NA NA NA NA NA LTS-030 chr10 81315600 82004049 688450 * c(BMS1P21, TMEM254-AS1, PLAC9, ANXA11, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.464586342813026 11 0.0518062825252971 0.826171242224772 498 0.409688339559298 4 2 2 -6.96830731375599 LTS-030 chr10 82004050 82004173 124 * character(0) NA 0 NA 0.439 1 NA NA NA NA NA LTS-030 chr10 82004174 82009627 5454 * character(0) 0.439 1 NA 0.295718473676166 76 0.236583994579574 1 1 0 -5.76958117217675 LTS-030 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.082 1 NA NA NA NA NA LTS-030 chr10 82012432 89728895 7716464 * c(KLLN, GRID1-AS1, MIR4678, NRG3, ADIRF, LDB3, AGAP11, CFL1P1, DYDC1, LINC00858, WAPL, LRIT1, GHITM, GLUD1, GRID1, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00863, MIR346, CCSER2, FAM35A, PTEN, RGR, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TSPAN14, FAM213A, DYDC2, ATAD1, PAPSS2, CDHR1, OPN4, MINPP1) 0.438088533808913 72 0.0508619579992552 0.976123287394962 2812 0.486409623878234 4 2 2 -6.74450680376412 LTS-030 chr10 89728896 90733237 1004342 * c(ANKRD22, LIPJ, LIPM, FAS, RNLS, STAMBPL1, ACTA2, LIPK, LIPN, LIPF) 0.393595992998653 12 0.134729020967678 0.767043887663587 620 0.417205497504966 3 2 1 -6.75231953988466 LTS-030 chr10 90733238 93624719 2891482 * c(HECTD2-AS1, FAS-AS1, MIR4679-1, MIR4679-2, LINC00502, RPP30, NUDT9P1, HECTD2, IFIT5, ANKRD1, FLJ37201, HTR7, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, PPP1R3C, STAMBPL1, ACTA2, LINC00865, TNKS2, PCGF5, CH25H, KIF20B) 0.406221164832343 25 0.11238574939318 0.923706830373236 1785 0.487091429350057 4 2 2 -6.82824516575605 LTS-030 chr10 93624720 95276784 1652065 * c(MARK2P9, FGFBP3, CYP26A1, CPEB3, MYOF, HHEX, CYP26C1, IDE, KIF11, EXOC6, MARCH5, CEP55, TNKS2, BTAF1) 0.424556238410775 23 0.102787339464305 1.09983543453727 1587 0.617046550845413 5 3 2 -6.76361189783009 LTS-030 chr10 95276785 98287940 3011156 * c(C10orf131, PLCE1-AS1, MIR3157, SORBS1, FRA10AC1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, SLC35G1, DNTT, TBC1D12, TCTN3, PIPSL, BLNK, HELLS, FFAR4, CC2D2B, PLCE1, PDE6C, CCNJ, CEP55, TM9SF3, ALDH18A1, RBP4, NOC3L, TLL2, ENTPD1-AS1, PDLIM1, LGI1, OPALIN, ENTPD1, ZNF518A) 0.436325012518809 72 0.0444877644904571 0.880809859099291 3191 0.440363898747428 4 2 2 -6.88108422075652 LTS-030 chr10 98287941 98290251 2311 * TM9SF3 NA 0 NA 1.592 1 NA NA NA NA NA LTS-030 chr10 98290252 101421376 3131125 * c(FRAT1, MIR1287, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, HOGA1, PIK3AP1, MORN4, ZFYVE27, NKX2-3, RRP12, FRAT2, C10orf12, ANKRD2, CNNM1, R3HCC1L, GOT1, HPS1, GOLGA7B, C10orf62, EXOSC1, PGAM1, CRTAC1, PI4K2A, TM9SF3, ENTPD7, AVPI1, HPSE2, MMS19, SFRP5, SLIT1, UBTD1, SLC25A28, MARVELD1, LOXL4, ZDHHC16, LCOR, PYROXD2, ARHGAP19) 0.451109990494096 71 0.0376836348834367 1.00772525847987 3125 0.49379713334669 4 2 2 -6.79848764182305 LTS-030 chr10 101421377 101439012 17636 * ENTPD7 NA 0 NA 0.751 1 NA NA NA NA NA LTS-030 chr10 101439013 102304727 865715 * c(DNMBP-AS1, ERLIN1, CHUK, ABCC2, COX15, CPN1, DNMBP, SEC31B, BLOC1S2, NDUFB8, CUTC, CWF19L1, HIF1AN, ENTPD7, SCD, SNORA12, WNT8B, OLMALINC, PKD2L1) 0.431933093645082 45 0.0583868326099492 0.812975256324733 1665 0.357875946288815 4 2 2 -6.90995468261763 LTS-030 chr10 102304728 104593938 2289211 * c(TLX1NB, KCNIP2-AS1, MIR3158-1, MIR3158-2, RPARP-AS1, ACTR1A, NPM3, LBX1, MGEA5, SFXN2, CYP17A1, FGF8, PPRC1, DPCD, POLL, KCNIP2, TLX1, LBX1-AS1, ARL3, NFKB2, PAX2, SUFU, PITX3, WBP1L, HIF1AN, SLF2, PSD, C10orf2, MIR146B, SEMA4G, FBXW4, MIR608, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, TRIM8, KAZALD1, SFXN3, ELOVL3, LZTS2, MRPL43, GBF1, LDB1, BTRC, NOLC1) 0.427929618425425 51 0.0737671907515296 1.05739379318442 3735 0.54735006305783 4 2 2 -6.75989424987516 LTS-030 chr10 104593939 105900790 1306852 * c(MIR936, MIR1307, SH3PXD2A-AS1, BORCS7-ASMT, BORCS7, SFR1, CALHM3, COL17A1, CYP17A1, NT5C2, PDCD11, CALHM1, CALHM2, CNNM2, AS3MT, TAF5, RPEL1, OBFC1, CFAP43, PCGF6, USMG5, INA, NEURL1, SH3PXD2A, SLK) 0.430799370038352 31 0.0510978399476125 0.864248169787598 2042 0.383261509179613 4 2 2 -6.85864539694312 LTS-030 chr10 105900791 105902009 1219 * CFAP43 NA 0 NA 0.571 1 NA NA NA NA NA LTS-030 chr10 105902010 111628435 5726426 * c(MIR4482, SORCS1, GSTO2, CFAP58, SORCS3, MIR609, XPNPEP1, CFAP43, ITPRIP, GSTO1) 0.419767042546546 10 0.0354659461079686 0.724931093989356 882 0.322947651292239 2 1 1 -7.91029859256408 LTS-030 chr10 111628436 114187787 2559352 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, GUCY2GP, MXI1, ACSL5, GPAM, RPL13AP6, TECTB, XPNPEP1, SHOC2, SMC3, BBIP1) 0.41517117478 20 0.0816321015287491 0.935947891956652 1519 0.519346227252414 4 2 2 -6.80705690352447 LTS-030 chr10 114187788 114187827 40 * ACSL5 0.418 1 NA 2.549 1 NA NA NA NA NA LTS-030 chr10 114187828 114194097 6270 * c(ACSL5, ZDHHC6) 0.407946396808735 2 0.0424264068711929 0.849029003167855 40 0.362295458650774 5 3 2 -6.73928490604586 LTS-030 chr10 114194098 124338383 10144286 * c(MIR2110, MIR4295, MIR3941, MIR3663, MIR4483, MIR4682, MIR4681, TACC2, PRDX3, VAX1, ATE1, SEC23IP, BTBD16, PDZD8, PNLIPRP3, SFXN4, TRUB1, VTI1A, C10orf82, CACUL1, ADRB1, DMBT1, EMX2OS, PLPP4, EMX2, FGFR2, RAB11FIP2, INPP5F, CASC2, HSPA12A, ATRNL1, GFRA1, WDR11-AS1, PRLHR, GRK5, HABP2, KCNK18, VWA2, NANOS1, NHLRC2, CCDC172, ENO4, ARMS2, ABLIM1, NRAP, PNLIP, PNLIPRP1, PNLIPRP2, NSMCE4A, CCDC186, WDR11, NA NA NA NA NA NA NA NA NA LTS-030 TDRD1, HTRA1, SHTN1, FAM160B1, PLEKHA1, RGS10, FAM204A, SNORA19, ZDHHC6, SLC18A2, TCF7L2, TIAL1, MCMBP, PLEKHS1, CASP7, AFAP1L2, EIF3A, BAG3, DCLRE1A) 0.357780991087272 159 0.0672521080068642 1.34123387011037 6958 1.01063639117836 6 4 2 -6.74469179837197 LTS-030 NA NA NA NA LTS-030 chr10 124338384 124344719 6336 * DMBT1 NA 0 NA 0.305 1 NA NA NA NA NA LTS-030 chr10 124344720 124359524 14805 * DMBT1 0.354 1 NA 0.554717104835978 41 0.208855788150347 2 2 0 -5.76560075087351 LTS-030 chr10 124359525 126681976 2322452 * c(FAM24B-CUZD1, FAM24A, PSTK, CPXM2, CTBP2, DMBT1, FAM24B, FAM175B, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, NKX1-2, C10orf120, LOC399815, METTL10, OAT, CUZD1, CHST15, ZRANB1, LHPP, IKZF5, C10orf88, BUB3, FAM53B) 0.364654780108209 56 0.0571951205801843 1.34023402379542 1820 0.676328652932138 6 4 2 -6.75177402767479 LTS-030 chr10 126681977 127526873 844897 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CTBP2, EDRF1, LOC283038, TEX36, FLJ37035, DHX32, BCCIP, UROS) 0.364662750145446 16 0.097358786626238 1.89120115071177 530 1.0211518758057 9 6 3 -6.74936089060132 LTS-030 chr10 127526874 129921195 2394322 * c(LINC00601, FANK1-AS1, C10orf90, CLRN3, DOCK1, FOXI2, MKI67, DHX32, BCCIP, PTPRE, NPS, FAM196A, ADAM12, FANK1) 0.331677705791255 89 0.0612443114033014 1.2274905826954 1621 0.590887696400963 6 4 2 -6.89983350679447 LTS-030 chr10 129921196 131633720 1712525 * c(EBF3, MGMT, MKI67) 0.106 1 NA 1.22050148623679 67 0.458532144701995 5 5 0 -5.7657309132583 LTS-030 chr10 131633721 131635222 1502 * EBF3 NA 0 NA 1.23481002602934 32 0.374404279510971 5 NA NA -5.76441520643326 LTS-030 chr10 131635223 134162485 2527263 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, EBF3, TCERG1L, JAKMIP3, STK32C, LINC00959, LINC01164, PPP2R2D, BNIP3, LRRC27) 0.108368844485125 31 0.0468748964156562 0.954120960637125 813 0.502400290731477 4 4 0 -6.77100590078679 LTS-030 chr10 134162486 134693137 530652 * c(C10orf91, PWWP2B, INPP5A, CFAP46, LRRC27, NKX6-2) 0.0471515818120671 8 0.0448298370029859 1.22757610587316 481 0.916137415597949 8 8 0 -6.80609317066352 LTS-030 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.672 1 NA NA NA NA NA LTS-030 chr10 134694406 134756359 61954 * CFAP46 NA 0 NA 0.556383830435521 167 0.19864201330054 2 NA NA -5.7694912854699 LTS-030 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.162 1 NA NA NA NA NA LTS-030 chr10 134884462 135051717 167256 * c(VENTX, UTF1, ADGRA1, KNDC1) 0.0744374913490808 3 0.0430155010819743 0.8605826560048 414 0.443341130108446 5 5 0 -6.80919128937817 LTS-030 chr10 135051718 135053286 1569 * VENTX NA 0 NA 1.224 1 NA NA NA NA NA LTS-030 chr10 135053287 135279049 225763 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, MTG1) 0.0716185001568024 4 0.052930772398168 1.16455745160898 789 0.585806673048176 6 6 0 -6.74675595804338 LTS-030 chr10 135279050 135279265 216 * SCART1 NA 0 NA 0.707 1 NA NA NA NA NA LTS-030 chr10 135279266 135381592 102327 * c(CYP2E1, SPRNP1, SCART1, SYCE1) 0.106903190451818 5 0.0281726818034776 0.75739215242463 185 0.277064925237226 4 4 0 -6.84305172533462 LTS-030 chr10 135381593 135381623 31 * c(SPRNP1, SYCE1) 0.086 1 NA 0.630264796343111 3 0.264076377840452 2 2 0 -5.76441081150639 LTS-030 chr10 135381624 135473026 91403 * c(SPRNP1, FRG2B, SYCE1) 0.390881338370566 9 0.130573840327141 0.605432463848019 51 0.446582198041797 3 2 1 -6.7648678726142 LTS-030 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.267 1 NA NA NA NA NA LTS-030 chr11 193025 193096 72 * SCGB1C1 0.438 1 NA 0.581448662869966 3 0.0660530090154869 2 2 0 -5.7644185793346 LTS-030 chr11 193097 382032 188936 * c(IFITM3, IFITM2, ODF3, SCGB1C1, NLRP6, SIRT3, B4GALNT4, IFITM5, BET1L, PSMD13, RIC8A, PGGHG, IFITM1) 0.159534051491164 28 0.0916888212765872 0.632290895287063 775 0.458922959704643 2 2 0 -6.73677330612337 LTS-030 chr11 382033 867824 485792 * c(MIR210HG, DEAF1, PKP3, LRRC56, LOC143666, LOC171391, DRD4, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, MIR210, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PHRF1, SIGIRR, RNH1, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, RASSF7, PTDSS2, CD151) 0.132880319311085 37 0.0563277224136776 0.791077952774279 1927 0.451428282327309 3 3 0 -6.74935895199976 LTS-030 chr11 867825 902355 34531 * CHID1 0.308 1 NA 0.640870592706354 77 0.264720082627433 2 2 0 -5.76577271626548 LTS-030 chr11 902356 1018483 116128 * c(AP2A2, MUC6, CHID1) 0.341974298865805 43 0.0813516831142107 0.73956506168377 346 0.334702053270417 3 2 1 -6.82529514042942 LTS-030 chr11 1018484 1018544 61 * MUC6 NA 0 NA 0.539 1 NA NA NA NA NA LTS-030 chr11 1018545 1260193 241649 * c(MUC2, MUC6, MUC5B) 0.364708524535579 49 0.113384669745664 0.544515051727248 768 0.279251797626355 2 1 1 -6.99459725041611 LTS-030 chr11 1260194 1260214 21 * MUC5B 0.235 1 NA 1.554 1 NA NA NA NA NA LTS-030 chr11 1260215 1288736 28522 * MUC5B 0.224601319417925 12 0.0404156435359409 0.52823576394981 226 0.273216376877199 1 1 0 -6.94818321558855 LTS-030 chr11 1288737 1295547 6811 * character(0) NA 0 NA 1.043 1 NA NA NA NA NA LTS-030 chr11 1295548 2167618 872071 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, CTSD, DUSP8, TOLLIP-AS1, H19, KRTAP5-AS1, IGF2, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TNNI2, TNNT3, INS-IGF2, MOB2, SYT8, BRSK2) 0.146179730859705 49 0.0485343520955347 0.703101328930757 1191 0.400830811361027 2 2 0 -6.90495379612975 LTS-030 chr11 2167619 2167981 363 * c(IGF2, IGF2-AS, INS-IGF2) 0.086 1 NA 0.462081587357685 7 0.236754745514867 1 1 0 -5.76449590437181 LTS-030 chr11 2167982 3239617 1071636 * c(MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, MRGPRG-AS1, C11orf21, TRPM5, IGF2, INS, KCNQ1, MRGPRG, ASCL2, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, SNORA54, TH, INS-IGF2, PHLDA2, CARS, CD81) 0.154411579838256 15 0.0686226396072511 0.711569795736579 1189 0.343754241668757 2 2 0 -6.90511336748523 LTS-030 chr11 3239618 4185675 946058 * c(MIR4687, OR7E12P, MRGPRE, ART5, PGAP2, MRGPRG-AS1, MRGPRG, RHOG, ART1, NUP98, CHRNA10, RRM1, TSSC2, STIM1, TRPC2, ZNF195) 0.153182232350187 18 0.0421131373786053 0.601597507265554 931 0.319734480159762 2 2 0 -6.78021721153734 LTS-030 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.494 1 NA NA NA NA NA LTS-030 chr11 4229252 4827264 598013 * c(OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, TRIM68, TRIM21, OR51E2) 0.219728994774931 17 0.0516726830779145 0.4437330376971 562 0.228572318562056 1 1 0 -6.98856270334757 LTS-030 chr11 4827265 4842496 15232 * character(0) NA 0 NA 0.242 1 NA NA NA NA NA LTS-030 chr11 4842497 5529284 686788 * c(OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR51T1, OR51A4, OR51A2, UBQLN3, MMP26, OR51G1, OR51B4, OR51B2, OR51G2) 0.191930966455054 32 0.0607156165142847 0.346091339460799 927 0.182965402011751 1 1 0 -7.4405306538692 LTS-030 chr11 5529285 5730560 201276 * c(TRIM22, TRIM6, UBQLNL, HBG2, OR52B6, OR52H1, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM5) 0.219307819564857 9 0.0607186132911482 0.501134836186609 449 0.296738069657018 1 1 0 -6.93698339423665 LTS-030 chr11 5730561 6221527 490967 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR56B1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.198795845177505 13 0.0489117467931679 0.362992270777584 509 0.191024283468166 1 1 0 -7.35725223644783 LTS-030 chr11 6221528 6226713 5186 * character(0) NA 0 NA 0.739 1 NA NA NA NA NA LTS-030 chr11 6226714 6704649 477936 * c(TRIM3, PRKCDBP, TPP1, CNGA4, DNHD1, C11orf42, RRP8, ARFIP2, TIMM10B, APBB1, HPX, ILK, MRPL17, SMPD1, TAF10, FAM160A2, DCHS1, CCKBR) 0.159233350180971 25 0.0502687112758357 0.588378461380658 1924 0.514773895149449 2 2 0 -6.74131390180046 LTS-030 chr11 6704650 6735805 31156 * GVINP1 NA 0 NA 0.374 1 NA NA NA NA NA LTS-030 chr11 6735806 7079086 343281 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, NLRP14, OR2AG2, OR10A2, GVINP1, ZNF214, ZNF215, OR6A2) 0.182308237467535 8 0.106718253894475 0.348665211620134 506 0.162038013206612 1 1 0 -7.08842473840883 LTS-030 chr11 7079087 7079487 401 * NLRP14 NA 0 NA 0.488 1 NA NA NA NA NA LTS-030 chr11 7079488 7794646 715159 * c(SYT9, RBMXL2, OLFML1, NLRP14, OVCH2, CYB5R2, PPFIBP2) 0.151193862436709 13 0.0735284699788857 0.528681659196553 613 0.262047990285356 2 2 0 -6.84957560752802 LTS-030 chr11 7794647 7794716 70 * character(0) NA 0 NA 0.348 1 NA NA NA NA NA LTS-030 chr11 7794717 7818552 23836 * OR5P2 0.178372186752859 3 0.0126622799421484 0.113891253999964 38 0.103725774391495 2 2 0 -9.72829089165392 LTS-030 chr11 7818553 7846557 28005 * character(0) NA 0 NA 0.51 1 NA NA NA NA NA LTS-030 chr11 7846558 8707481 860924 * c(OR5P3, OR5E1P, OR10A3, LOC283299, NLRP10, OR10A6, LMO1, RPL27A, SNORA3A, STK33, SNORA3B, TUB, RIC3, EIF3F, TRIM66) 0.146269135539337 17 0.0748405658324257 0.538343011140229 1074 0.287120044981352 2 2 0 -6.84063112878454 LTS-030 chr11 8707482 8707595 114 * RPL27A NA 0 NA 1.029 1 NA NA NA NA NA LTS-030 chr11 8707596 8736316 28721 * c(RPL27A, ST5) 0.163065539263958 4 0.0639706964164062 0.924937362947876 177 0.428075159439223 2 2 0 -6.75131661425749 LTS-030 chr11 8736317 8736932 616 * ST5 NA 0 NA 0.697 1 NA NA NA NA NA LTS-030 chr11 8736933 9812236 1075304 * c(MIR5691, IPO7, SWAP70, DENND5A, KRT8P41, SBF2-AS1, TMEM41B, LOC440028, TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, LOC644656, ST5, SNORA23, WEE1, ZNF143, SBF2) 0.160141193330287 27 0.0691960137514317 0.629965866487746 1447 0.343394266476484 2 2 0 -6.75006554103319 LTS-030 chr11 9812237 9983647 171411 * c(SBF2-AS1, SBF2) NA 0 NA 0.574073249464694 98 0.191758721082766 2 NA NA -5.76938086643755 LTS-030 chr11 9983648 10022585 38938 * SBF2 0.333 1 NA 1.17567878493714 35 0.404110075277982 5 5 0 -5.76447307135624 LTS-030 chr11 10022586 14665781 4643196 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MRVI1, SPON1, LYVE1, COPB1, ADM, EIF4G2, RRAS2, DKK3, AMPD3, CSNK2A3, GALNT18, ARNTL, RNF141, PDE3B, USP47, PARVA, PSMA1, PTH, ZBED5, RASSF10, SNORD97, TEAD1, ZBED5-AS1, SBF2, FAR1, BTBD10, MICALCL, MICAL2, CTR9) 0.436714412595315 52 0.0539249345583206 1.00134285909108 2705 0.438848444039517 4 2 2 -6.73382005706804 LTS-030 chr11 14665782 15099071 433290 * c(CYP2R1, PDE3B, CALCA, CALCB) NA 0 NA 0.706443047865798 209 0.362766534771966 3 NA NA -5.79444864523622 LTS-030 chr11 15099072 15133901 34830 * CALCB NA 0 NA 1.53 1 NA NA NA NA NA LTS-030 chr11 15133902 17660529 2526628 * c(USH1C, OR7E14P, C11orf58, PLEKHA7, OTOG, NCR3LG1, KCNJ11, INSC, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8) 0.456647676924307 20 0.0504884301493656 1.05661190644026 1855 0.450848982542226 4 2 2 -6.83094127277283 LTS-030 chr11 17660530 17660915 386 * OTOG NA 0 NA 0.491 1 NA NA NA NA NA LTS-030 chr11 17660916 32410426 14749511 * c(LOC100126784, CCDC179, SPTY2D1-AS1, DCDC5, SAA2-SAA4, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, DBX1, DNAJC24, ARL14EP, MUC15, SPTY2D1, TMEM86A, SLC5A12, LDHAL6A, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, SERGEF, ELP4, IGSF22, GTF2H1, LUZP2, OTOG, DCDC1, KCNA4, KCNC1, FIBIN, LDHA, LDHC, NAV2-AS4, DKFZp686K1684, MYOD1, NELL1, LOC494141, NA NA NA NA NA NA NA NA NA LTS-030 BDNF-AS, PAX6, ZDHHC13, UEVLD, LIN7C, LGR4, SLC17A6, RCN1, BDNF, SAA1, SAA2, SAA3P, SAA4, ANO3, MIR610, TPH1, TSG101, MPPED2, WT1, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.427954565327456 128 0.0797818996595556 0.892419441848052 6356 0.4758119302187 4 2 2 -7.21169858787759 LTS-030 NA NA NA NA LTS-030 chr11 32410427 32627604 217178 * c(EIF3M, CCDC73, WT1-AS, WT1) 0.482 1 NA 1.37464975155945 206 0.64700264794697 6 6 0 -5.76452402812799 LTS-030 chr11 32627605 32627650 46 * CCDC73 0.49 1 NA 0.568 1 NA NA NA NA NA LTS-030 chr11 32627651 40137543 7509893 * c(C11orf91, MIR3973, MIR1343, HIPK3, C11orf74, LDLRAD3, CSTF3, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, LINC00294, COMMD9, CSTF3-AS1, LMO2, CAPRIN1, CCDC73, APIP, TRIM44, NAT10, TCP11L1, LRRC4C, RAG1, RAG2, SLC1A2, TRAF6, PRRG4, QSER1, PRR5L, PDHX, CAT, DEPDC7, CD44, CD59) 0.442592229655206 95 0.0453541544746179 0.947678748612144 3889 0.576597833692831 4 2 2 -6.77647208798696 LTS-030 chr11 40137544 40137910 367 * LRRC4C NA 0 NA 1.08313624337022 9 0.183017075706066 4 NA NA -5.76445194781089 LTS-030 chr11 42209164 43333476 1124313 * c(LOC100507205, HNRNPKP3) 0.015 1 NA 0.414646876778631 25 0.168245326829603 1 1 0 -5.80317847355848 LTS-030 chr11 43333477 44640869 1307393 * c(MIR670, ALKBH3-AS1, EXT2, ALKBH3, CD82, C11orf96, ACCSL, MIR129-2, HSD17B12, TTC17, ALX4, SEC14L1P1, ACCS, API5) 0.145451048000029 11 0.0522041447327004 0.548054118875596 994 0.268750076409405 2 2 0 -6.90019561910973 LTS-030 chr11 44640870 47653299 3012430 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, LARGE2, CRY2, C11orf94, DDB2, F2, LOC221122, MTCH2, HARBI1, PACSIN3, CD82, DKFZp779M0652, ARHGAP1, FAM180B, LRP4, MDK, MYBPC3, NDUFS3, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, PRDM11, PSMC3, SYT13, RAPSN, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, NA NA NA NA NA NA NA NA NA LTS-030 MAPK8IP1, TP53I11, ATG13, CKAP5) 0.209629407171052 53 0.0903005343404848 0.632677867531486 4019 0.291332894247654 2 2 0 -6.93977830586182 LTS-030 NA NA NA NA LTS-030 chr11 47653300 47656106 2807 * MTCH2 NA 0 NA 0.322 1 NA NA NA NA NA LTS-030 chr11 47656107 48328644 672538 * c(OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, PTPRJ, AGBL2) 0.204821135846287 10 0.0818483692907535 0.528547161108932 778 0.481808413104037 2 2 0 -6.89858399658173 LTS-030 chr11 48328645 48346423 17779 * OR4S1 0.419 1 NA 0.271665144148226 5 0.0599891656884808 0 0 0 -6.0506194900865 LTS-030 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.366659563599538 102 0.0781304679701704 0.583328472035752 188 0.282510746434853 3 2 1 -6.76896451271649 LTS-030 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.463 1 NA NA NA NA NA LTS-030 chr11 48388749 48453725 64977 * character(0) NA 0 NA 0.225 1 NA NA NA NA NA LTS-030 chr11 48453726 48510654 56929 * OR4A47 0.128 1 NA 0.268287881479472 19 0.304863184729657 0 0 0 -5.79857994452212 LTS-030 chr11 48510655 51527482 3016828 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.164501392770151 15 0.115524806653727 0.412684508651669 451 0.292745112077861 1 1 0 -7.05893186164407 LTS-030 chr11 51527483 51527703 221 * character(0) NA 0 NA 0.414822857640833 3 0.0421465696508427 1 NA NA -5.76453436729648 LTS-030 chr11 55035776 55136125 100350 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) 0.146 1 NA 0.309833047947508 31 0.218013751169335 1 1 0 -5.84313113205523 LTS-030 chr11 55136126 56143125 1007000 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR8U8, OR8J3, OR4P4, OR4C15, OR4A15, TRIM51) 0.199378662466215 10 0.0500543038442583 0.329963191307972 729 0.133776689002186 1 1 0 -8.25880833190266 LTS-030 chr11 56143126 56143198 73 * OR8U8 0.467 1 NA 0.667826999708374 3 0.153324275094759 2 2 0 -5.76443200672516 LTS-030 chr11 56143199 56468259 325061 * c(OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.36072911232417 22 0.106246792668678 0.377852154339881 284 0.21919609062078 1 1 0 -7.35200833767729 LTS-030 chr11 56468260 56468554 295 * c(OR8U8, OR9G9) 0.099 1 NA 0.650436593981644 7 0.593636733557292 2 2 0 -5.76441355913914 LTS-030 chr11 56468555 56854968 386414 * c(OR5AK4P, OR9G4, OR5AK2, OR8U8, OR9G9) 0.162443747480881 16 0.0976241090441632 0.405428017536657 121 0.248228640549355 1 1 0 -7.16423405336523 LTS-030 chr11 56854969 56949188 94220 * character(0) NA 0 NA 0.673 1 NA NA NA NA NA LTS-030 chr11 56949189 57137834 188646 * c(APLNR, LRRC55, P2RX3, SSRP1, TNKS1BP1) 0.207857131216944 5 0.0342607647316869 0.686412323845102 451 0.283658315931497 6 5 1 -7.39280112540402 LTS-030 chr11 57137835 57228198 90364 * c(PRG3, SLC43A3, PRG2) NA 0 NA 0.626876250222646 173 0.306504798588872 2 NA NA -5.76562140878808 LTS-030 chr11 57228199 57228338 140 * character(0) NA 0 NA 2.419 1 NA NA NA NA NA LTS-030 chr11 57228339 57581882 353544 * c(TMX2-CTNND1, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, RTN4RL2, MIR130A, TMX2, BTBD18, SERPING1, SLC43A1, UBE2L6) NA 0 NA 1.09329823297566 862 0.558762205117951 4 NA NA -5.76981106669192 LTS-030 chr11 57581883 57798798 216916 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9Q1) 0.42 1 NA 0.70927756316244 95 0.53246213477768 3 3 0 -5.77097108890738 LTS-030 chr11 57798799 58318619 519821 * c(OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1, LPXN) 0.432242271865944 16 0.0331259591056118 0.627885126597159 388 0.301162518655379 2 1 1 -6.76304543437368 LTS-030 chr11 58318620 58318662 43 * LPXN NA 0 NA 0.963 1 NA NA NA NA NA LTS-030 chr11 58318663 58393231 74569 * c(CNTF, ZFP91-CNTF, ZFP91, LPXN) 0.432601331467495 6 0.0397676585514745 1.15016764263122 231 0.520539049352685 4 2 2 -6.75005913891252 LTS-030 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.795 1 NA NA NA NA NA LTS-030 chr11 58476545 58920924 444380 * c(GLYAT, GLYATL2, LOC283194, FAM111B, FAM111A, GLYATL1) 0.435384415583178 8 0.0553958159843451 0.698884604966081 291 0.342877274001445 2 1 1 -6.78879051909966 LTS-030 chr11 58920925 58921041 117 * FAM111A NA 0 NA 1.386 1 NA NA NA NA NA LTS-030 chr11 58921042 58978295 57254 * c(MPEG1, DTX4, FAM111A) 0.433039102134183 5 0.0277884868245826 1.03346450486843 205 0.380128933234966 4 2 2 -6.75755592694094 LTS-030 chr11 58978296 59282868 304573 * c(MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) 0.444 1 NA 0.623338184669145 190 0.202208300102803 2 2 0 -5.77160887571414 LTS-030 chr11 59282869 59282899 31 * OR4D9 NA 0 NA 0.985 1 NA NA NA NA NA LTS-030 chr11 59282900 59611577 328678 * c(MIR3162, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, OR10V2P) 0.48 1 NA 1.0110483303515 484 0.491028607816139 4 4 0 -5.76450888004473 LTS-030 chr11 59611578 60539074 927497 * c(OOSP2, MS4A15, MS4A2, MS4A6E, GIF, LINC00301, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, MS4A8, MS4A14, MS4A1, MS4A3) 0.429555430418559 29 0.056298575085434 0.68097089046819 901 0.40658471429717 2 1 1 -6.80376151762778 LTS-030 chr11 60539075 62284060 1744986 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, FTH1, TKFC, DKFZP434K028, PRPF19, MS4A10, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, SYT7, CD5, CD6, FADS2) 0.448741125127867 55 0.0395613745577976 1.05362311974327 3485 0.517566161619732 4 2 2 -6.78254429354901 LTS-030 chr11 62284061 62300169 16109 * AHNAK NA 0 NA 0.753897236407204 260 0.184160744148094 3 NA NA -5.76538877939669 LTS-030 chr11 62300170 62677434 377265 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, TUT1, SLC3A2, STX5, SNORA57, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22) 0.45280724194845 30 0.0485423029162584 1.16414417718327 1924 0.711379158547157 4 2 2 -6.7940271681732 LTS-030 chr11 62677435 63327653 650219 * c(CHRM1, SLC22A9, HRASLS5, SLC22A24, SLC22A25, SLC22A10, HRASLS2, RARRES3, LGALS12, SLC22A6, SLC22A8) 0.438682113428208 15 0.0514168769772653 0.785645510068942 736 0.394906767155575 4 2 2 -6.87520495684529 LTS-030 chr11 63327654 63330013 2360 * HRASLS2 NA 0 NA 1.016 1 NA NA NA NA NA LTS-030 chr11 63330014 65180237 1850224 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, RTN3, CDC42EP2, EHD1, STIP1, PLA2G16, CDCA5, BATF2, SLC22A12, COX8A, C11orf84, GPHA2, MARK2, ESRRA, FAU, TIGD3, FKBP2, ATG2A, POLA2, FLRT1, PRDX5, TEX40, ATL3, PPP1R14B, MAJIN, SLC25A45, CCDC88B, RCOR2, MACROD1, SAC3D1, DNAJC4, SPDYC, ARL2, MIR192, MIR194-2, MEN1, SLC22A20, KCNK4, TRMT112, PLCB3, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, NA NA NA NA NA NA NA NA NA LTS-030 GPR137, BAD, PYGM, MAP4K2, DPF2, C11orf95, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, NAA40, CAPN1, FERMT3, TRPT1, FRMD8, NUDT22, SYVN1, RPS6KA4, NRXN2) 0.45182451883068 96 0.0628990968264167 1.12101590729855 5436 0.573157882137145 4 2 2 -6.80305866811638 LTS-030 NA NA NA NA LTS-030 chr11 65180238 65482155 301918 * c(MIR4489, MIR4690, KCNK7, KAT5, SSSCA1, FAM89B, SSSCA1-AS1, EHBP1L1, NEAT1, MALAT1, PCNX3, LTBP3, MAP3K11, SCYL1, RELA, SIPA1, FRMD8) 0.456233127204056 10 0.0320709283377398 1.3125051264586 1320 0.560791279399657 6 3 3 -6.91084047891667 LTS-030 chr11 65482156 66999400 1517245 * c(RBM14-RBM4, DPP3, RBM14, KAT5, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, KDM2A, PELI3, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, TMEM151A, BRMS1, NPAS4, RHOD, EFEMP2, SLC29A2, OVOL1, PC, CCDC87, PACS1, CD248, BBS1, RBM4, KLC2, MRPL11, SPTBN2, LRFN4, C11orf80, MUS81, FOSL1, RAB1B, C11orf68, RBM4B, RNASEH2C, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, AP5B1, FIBP, SYT12, NA NA NA NA NA NA NA NA NA LTS-030 RIN1, CCS, RCE1) 0.445873068239841 66 0.0704079355561388 1.0840382552022 4117 0.537209143915701 4 2 2 -6.75982642242687 LTS-030 NA NA NA NA LTS-030 chr11 66999401 67815007 815607 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.435917987724033 31 0.0934857472892877 1.26686546209689 1777 0.597254546512146 6 3 3 -6.74743975398633 LTS-030 chr11 67815008 68527198 712191 * c(TCIRG1, CHKA, CPT1A, LRP5, GAL, KMT5B, C11orf24, PPP6R3, TESMIN) 0.457163295843162 9 0.0301818562127057 0.927331201654474 897 0.492234393478563 4 2 2 -6.960956786136 LTS-030 chr11 68527199 73373629 4846431 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, MRGPRD, MRGPRF, ARAP1, CPT1A, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, MYEOV, ALG1L9P, IGHMBP2, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, PDE2A, LAMTOR1, ANO1, NADSYN1, FAM86C1, NA NA NA NA NA NA NA NA NA LTS-030 RNF121, KRTAP5-8, PLEKHB1, CCND1, CLPB, RELT, PPFIA1, FADD, ATG16L2, ARHGEF17, FCHSD2, FGF19) 0.44756881186151 84 0.0630977576651914 1.13294329935052 4636 0.542606553222336 4 2 2 -6.89508003657165 LTS-030 NA NA NA NA LTS-030 chr11 73373630 73389088 15459 * c(PLEKHB1, RAB6A) 0.484 1 NA 0.538391735216723 46 0.157649591562448 2 2 0 -5.76862758071879 LTS-030 chr11 73389089 73390567 1479 * RAB6A NA 0 NA 0.985 1 NA NA NA NA NA LTS-030 chr11 73390568 82641317 9250750 * c(KCNE3, MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, RAB6A, NA NA NA NA NA NA NA NA NA LTS-030 SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.441042985839822 171 0.0591153362420968 1.00040265132634 6333 0.502838288309239 4 2 2 -6.7340252389397 LTS-030 NA NA NA NA LTS-030 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.355 1 NA NA NA NA NA LTS-030 chr11 82642812 82668550 25739 * DDIAS NA 0 NA 0.368974405693869 61 0.201583164304829 1 NA NA -5.76661803483462 LTS-030 chr11 82668551 82668624 74 * DDIAS NA 0 NA 0.886 1 NA NA NA NA NA LTS-030 chr11 82668625 85437150 2768526 * c(SNORA70E, RAB30-AS1, DLG2, DDIAS, CCDC89, RAB30, ANKRD42, PCF11, SYTL2, TMEM126B, CREBZF, CCDC90B, TMEM126A) 0.438939041761558 23 0.0509067193123486 0.823144170590354 1454 0.410921014531593 4 2 2 -7.08429041381778 LTS-030 chr11 85437151 85438992 1842 * SYTL2 0.434 1 NA 0.378697526255131 39 0.0958216404296487 1 1 0 -5.76471359806379 LTS-030 chr11 85438993 85439086 94 * SYTL2 NA 0 NA 0.713 1 NA NA NA NA NA LTS-030 chr11 85439087 88241874 2802788 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, CCDC83, RAB38, GRM5, HIKESHI, SYTL2, CCDC81, TMEM135, PICALM, FZD4, OR7E2P, EED) 0.450819720996191 20 0.0730352474386241 0.966853286844797 1239 0.541435946722327 4 2 2 -6.75618328246679 LTS-030 chr11 88241875 89940435 1698561 * c(NAALAD2, GRM5-AS1, TRIM64, FOLH1B, CHORDC1, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, UBTFL1, TYR) 0.409866251855684 16 0.0721774433831882 0.712475682199739 748 0.528064661936564 3 2 1 -6.93004656057595 LTS-030 chr11 89940436 90602370 661935 * c(MIR4490, CHORDC1) 0.448009434802033 2 0.0014142135623731 1.20926771851711 93 0.547173474649904 6 3 3 -13.6027734080541 LTS-030 chr11 91536381 92569929 1033549 * FAT3 0.467 1 NA 0.607305117086035 256 0.190930104595075 2 2 0 -5.76779005677188 LTS-030 chr11 92569930 92570814 885 * FAT3 NA 0 NA 1.062 1 NA NA NA NA NA LTS-030 chr11 92570815 103194774 10623960 * c(WTAPP1, MIR1304, MIR1260B, MIR3920, JRKL-AS1, LOC101054525, YAP1, GPR83, TMEM123, SLC36A4, FAT3, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, ENDOD1, PANX1, FUT4, ANGPTL5, C11orf54, BIRC2, BIRC3, HEPHL1, VSTM5, IZUMO1R, KDM4E, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, MTNR1B, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, CEP126, SCARNA9, MMP27, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, NA NA NA NA NA NA NA NA NA LTS-030 TRPC6, TAF1D, DYNC2H1, CCDC82, TMEM133, DCUN1D5, MAML2, C11orf70, CEP295, JRKL, MTMR2, MMP20, MED17, CEP57) 0.432262783485128 112 0.0562984068847478 0.903759376156316 6035 0.459569142323834 4 2 2 -7.03486352682563 LTS-030 NA NA NA NA LTS-030 chr11 103194775 103228980 34206 * DYNC2H1 NA 0 NA 0.766 1 NA NA NA NA NA LTS-030 chr11 103228981 106849443 3620463 * c(CASP12, MIR4693, CARD16, KBTBD3, GRIA4, GUCY1A2, DDI1, CARD17, CARD18, AASDHPPT, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, MSANTD4) 0.435227471304364 12 0.0637344752338429 0.748436604602667 1118 0.387868507335055 3 2 1 -7.31161758135428 LTS-030 chr11 106849444 109297511 2448068 * c(CWF19L2, KDELC2, C11orf65, DDX10, EXPH5, GUCY1A2, ACAT1, C11orf87, ATM, NPAT, SLC35F2, RAB39A, ELMOD1, LOC643923, SLN, CUL5, ALKBH8) 0.424995837523977 26 0.102705231684587 0.96708502337566 1962 0.536484052043555 4 2 2 -6.7493100923385 LTS-030 chr11 109297512 110100901 803390 * c(C11orf87, RDX, ZC3H12C) 0.433230511096732 2 0.00353553390593274 0.667924221950304 293 0.633270927379889 2 1 1 -7.89914888103348 LTS-030 chr11 110100902 110101038 137 * RDX NA 0 NA 1.466 1 NA NA NA NA NA LTS-030 chr11 110101039 114311507 4210469 * c(LOC100132078, NCAM1-AS1, MIR4301, HSPB2-C11orf52, MIR4491, RBM7, COLCA2, PIH1D2, CRYAB, LAYN, DLAT, DRD2, FDX1, SIK2, ANKK1, REXO2, TIMM8B, HSPB2, HTR3A, C11orf53, PLET1, IL18, COLCA1, C11orf88, MIR34B, MIR34C, NCAM1, NNMT, C11orf71, POU2AF1, BTG4, TTC12, PPP2R1B, C11orf57, TEX12, ARHGAP20, USP28, PTS, RDX, SDHD, CLDN25, C11orf1, ZBTB16, ALG9, TMPRSS5, BCO2, DIXDC1, HTR3B, ZW10, FDXACB1) 0.44175856054975 80 0.0696160525919203 0.968302987860257 3599 0.466472125296512 4 2 2 -6.7462553825928 LTS-030 chr11 114311508 114312406 899 * REXO2 NA 0 NA 0.697 1 NA NA NA NA NA LTS-030 chr11 114312407 114578494 266088 * c(NXPE1, NXPE2, REXO2, NXPE4) 0.395502899040167 15 0.0653549284038064 0.616952527159901 224 0.334069093411536 3 2 1 -6.89508822710568 LTS-030 chr11 114578495 114578652 158 * character(0) NA 0 NA 1.022 1 NA NA NA NA NA LTS-030 chr11 114578653 120740060 6161408 * c(LOC100131626, BACE1-AS, USP2-AS1, MIR3656, TMPRSS4-AS1, FXYD6-FXYD2, MIR4492, LOC100652768, MPZL2, HYOU1, ATP5L, TREH, APOA5, JAML, TTC36, DDX6, DPAGT1, MPZL3, TMEM136, OAF, CEP164, PHLDB1, ARHGEF12, SIK3, BACE1, TRIM29, CADM1, SLC37A4, RNF214, POU2F3, HINFP, LINC00900, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, APOA1, APOA4, CCDC84, APOC3, IL10RA, ARCN1, MCAM, KMT2A, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, NA NA NA NA NA NA NA NA NA LTS-030 FXYD6, VPS11, TMPRSS4, IFT46, DSCAML1, NECTIN1, RPS25, SCN2B, SCN4B, ABCG4, CXCR5, LOC649133, RPL23AP64, TAGLN, THY1, UPK2, RNF26, NLRX1, PDZD3, MFRP, TMPRSS13, BUD13, TMEM25, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, C2CD2L) 0.444592937072839 118 0.043853364267564 1.05254831257061 7850 0.577645500352218 4 2 2 -6.77298855847776 LTS-030 NA NA NA NA LTS-030 chr11 120740061 123601416 2861356 * c(MIR4493, TBCEL, GRIK4, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.437433275973891 52 0.0496706915777298 0.934375695901236 2018 0.472464362613101 4 2 2 -6.76861017427445 LTS-030 chr11 123601417 124490119 888703 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A, ZNF202) 0.426245084975961 44 0.0572636054348622 0.61308938259925 795 0.297782059235489 2 1 1 -6.76434761502474 LTS-030 chr11 124490120 128838719 4348600 * c(PATE3, MIR3167, SENCR, KIRREL3-AS2, CHEK1, TIRAP, PANX3, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, HEPACAM, FLI1, VSIG2, KIRREL3-AS3, DCPS, DDX25, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, ACRV1, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, FAM118B, MSANTD2, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, ESAM, EI24, FEZ1, ARHGAP32) 0.445060596346804 88 0.0506040510663526 0.971151184906927 3886 0.559777615992562 4 2 2 -6.74980252985364 LTS-030 chr11 128838720 129246112 407393 * c(BARX2, ARHGAP32) NA 0 NA 0.681163985829921 253 0.302675200130355 2 NA NA -5.80839826285166 LTS-030 chr11 129246113 129306073 59961 * BARX2 NA 0 NA 1.302 1 NA NA NA NA NA LTS-030 chr11 129306074 131240551 1934478 * c(ADAMTS8, TMEM45B, ADAMTS15, C11orf44, ZBTB44, APLP2, SNX19, LINC00167, NFRKB, NTM, PRDM10, ST14, BARX2) 0.433402455626934 35 0.0471523188875223 1.07111037642919 1550 0.549705729534513 4 2 2 -6.75849306265971 LTS-030 chr11 131240552 131240682 131 * NTM NA 0 NA 0.553 1 NA NA NA NA NA LTS-030 chr11 131240683 134856661 3615979 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, LOC283177, THYN1, OPCML, NTM, JAM3, GLB1L2) 0.431242565232609 30 0.058023023571405 0.853692377466406 1422 0.353969364109199 4 2 2 -7.14747903099473 LTS-030 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.544 1 NA NA NA NA NA LTS-030 chr12 90923 274647 183725 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.14 1 NA 0.66016612691608 87 0.563210892552196 2 2 0 -5.767715946015 LTS-030 chr12 274648 1040373 765726 * c(B4GALNT3, IQSEC3, NINJ2, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, CCDC77) 0.16044281548481 38 0.0685384505472216 0.605371252100686 1350 0.304583240654962 2 2 0 -6.73629827541094 LTS-030 chr12 1040374 1599725 559352 * c(ERC1, RAD52) NA 0 NA 0.57988479261858 154 0.228101906514476 2 NA NA -5.77105011483189 LTS-030 chr12 1599726 1600231 506 * ERC1 0.4 1 NA 1.10180619741851 13 0.232898349126053 5 5 0 -5.76445132407765 LTS-030 chr12 1600232 3951352 2351121 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, LOC283440, ITFG2, PRMT8, PARP11, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CRACR2A, CACNA2D4) 0.421924535913262 41 0.0561332148097546 1.01689814602661 2311 0.558739287449986 4 2 2 -6.78703108727008 LTS-030 chr12 3951353 3951456 104 * PARP11 NA 0 NA 0.722 1 NA NA NA NA NA LTS-030 chr12 3951457 3955381 3925 * PARP11 0.376332623999735 4 0.0301164406927512 0.551228997516621 52 0.153845639422217 3 2 1 -6.75223307120674 LTS-030 chr12 3955382 4657990 702609 * c(RAD51AP1, FGF6, PARP11, C12orf4, TIGAR, FGF23, CCND2) 0.365894525499677 19 0.0606236110952014 1.26887299029113 485 0.854407340979508 6 4 2 -6.75364355030085 LTS-030 chr12 4657991 5603763 945773 * c(AKAP3, RAD51AP1, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, DYRK4) 0.421785676803037 22 0.0535187793233342 0.825431536248504 640 0.390212488961426 4 2 2 -6.9260723973838 LTS-030 chr12 5603764 6567642 963879 * c(LTBR, NTF3, TAPBPL, PLEKHG6, ANO2, SCNN1A, CD27-AS1, TNFRSF1A, VWF, CD9, CD27) 0.447397032146941 29 0.0476422164490417 1.31302985602565 1063 0.590225283692928 6 3 3 -6.76024042262916 LTS-030 chr12 6567643 7363754 796112 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, LPAR5, PTMS, PTPN6, PEX5, SCARNA12, SCARNA11, VAMP1, SCARNA10, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CLSTN3, NCAPD2) 0.463528458415774 57 0.0303869572007432 1.10209326040249 3163 0.544102298818147 4 2 2 -7.1259633230997 LTS-030 chr12 7363755 8077160 713406 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, SLC2A3, NANOG, CD163, GDF3) 0.410508321259517 28 0.0708595283029936 0.706632541540433 785 0.484577000154808 2 1 1 -6.87569817835567 LTS-030 chr12 8077161 8078535 1375 * SLC2A3 NA 0 NA 1.474 1 NA NA NA NA NA LTS-030 chr12 8078536 9090446 1011911 * c(A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.394683002068015 8 0.162329250950917 0.887620879252222 1092 0.508279276385156 3 2 1 -6.76892057073332 LTS-030 chr12 9090447 9093783 3337 * c(PHC1, M6PR) NA 0 NA 0.346991377461455 50 0.200855762035489 1 NA NA -5.7653502435477 LTS-030 chr12 9093784 9580294 486511 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.348069204357007 14 0.0777651084221715 0.847851204115822 655 0.376465417768659 3 2 1 -6.80339669384899 LTS-030 chr12 9580295 9581659 1365 * DDX12P NA 0 NA 1.163 1 NA NA NA NA NA LTS-030 chr12 9581660 9717935 136276 * DDX12P 0.412 1 NA 1.37352949690737 116 0.620881414087924 6 6 0 -5.76449449748628 LTS-030 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.622 1 NA NA NA NA NA LTS-030 chr12 9747241 11548488 1801248 * c(SMIM10L1, KLRF2, KLRC4-KLRK1, PRH1-PRR4, KLRA1P, PRR4, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, TAS2R42, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB1, PRB3, PRB4, PRH1, PRH2, CLEC7A, PRB2, KLRC4, YBX3, NA NA NA NA NA NA NA NA NA LTS-030 CD69, CLEC2B) 0.373698370082772 78 0.0815947738902874 0.667447310301466 2096 0.375630354924541 3 2 1 -6.97249911992809 LTS-030 NA NA NA NA LTS-030 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 2.69 1 NA NA NA NA NA LTS-030 chr12 11802940 14849593 3046654 * c(LOC100506314, CDKN1B, BORCS5, CREBL2, EMP1, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, LRP6, LOH12CR2, HEBP1, DDX47, MANSC1, GPRC5D, ATF7IP, FAM234B, MIR613, MIR614, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, GPRC5A, HTR7P1) 0.432933250496425 34 0.0555385639493991 0.985566019171542 2152 0.5234789994485 4 2 2 -6.74076581581658 LTS-030 chr12 14849594 19626205 4776612 * c(MIR3974, STRAP, HIST4H4, ERP27, AEBP2, C12orf60, EPS8, ARHGDIB, ART4, MGP, MGST1, SMCO3, DERA, PDE6H, WBP11, PIK3C2G, PLEKHA5, H2AFJ, LMO3, PTPRO, SKP1P2, SLC15A5, RERGL, RERG, PLCZ1, CAPZA3) 0.392358731987457 23 0.0520529906344688 1.18059432024374 1873 0.616713225591284 5 3 2 -6.80996642455085 LTS-030 chr12 19626206 20094524 468319 * AEBP2 0.363 1 NA 1.53097262776006 75 0.651199738805092 7 7 0 -5.76576493419485 LTS-030 chr12 20094525 26224454 6129930 * c(MIR920, MIR4302, LOC100506393, RASSF8-AS1, ABCC9, SLCO1B1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, KRAS, LDHB, LRMP, GOLT1B, PDE3A, SLCO1C1, CASC1, ETNK1, CMAS, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, PYROXD1, SPX, C2CD5) 0.360320607018216 69 0.066427864073141 1.21680615772815 3017 0.601285819282343 6 4 2 -6.93119260305017 LTS-030 chr12 26224455 26385864 161410 * c(RASSF8, BHLHE41, SSPN) 0.358327545345628 7 0.0670468919062302 1.92353414812461 212 0.939785369788228 9 6 3 -6.74385136927206 LTS-030 chr12 26385865 26405708 19844 * SSPN NA 0 NA 0.67 1 NA NA NA NA NA LTS-030 chr12 26405709 32908518 6502810 * c(MANSC4, LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, FGFR1OP2, SMCO2, OVCH1, ITPR2, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, TM7SF3, KIAA1551, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, FLJ13224, SSPN, TMTC1, PPFIBP1, MED21) 0.360168716768954 113 0.0745361191598976 1.32113353687977 4491 1.05863688565554 6 4 2 -6.74665911354473 LTS-030 chr12 32908519 34176875 1268357 * c(SYT10, YARS2, PKP2, ALG10) NA 0 NA 1.38126645541586 248 0.679978285753968 6 NA NA -5.76474793359515 LTS-030 chr12 34176876 34182671 5796 * ALG10 NA 0 NA 0.726398639601029 55 0.481454023174567 3 NA NA -5.76454769382503 LTS-030 chr12 38710341 39064484 354144 * c(ALG10B, CPNE8) 0.419 1 NA 0.750826736110214 111 0.369278712583825 3 3 0 -5.77052726542229 LTS-030 chr12 39064485 45567843 6503359 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, KIF21A, TWF1, ADAMTS20, PUS7L, RACGAP1P, TMEM117, ZCRB1) 0.400261988140505 52 0.0946337944541502 0.820651612006897 3427 0.433982695272635 3 2 1 -6.79503571325618 LTS-030 chr12 45567844 52307016 6739173 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, ANKRD33, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, NA NA NA NA NA NA NA NA NA LTS-030 FIGNL2, ASIC1, ATF1, SLC11A2, DHH, PLEKHA8P1, FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, PCED1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 SCAF11, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.443131039915839 117 0.0714185473156509 1.00280893224491 10025 1.18191989662843 4 2 2 -6.73542506255912 LTS-030 NA NA NA NA LTS-030 chr12 52307017 52774367 467351 * c(KRT80, GRASP, C12orf80, LINC00592, NR4A1, KRT7, KRT81, KRT83, KRT84, KRT85, KRT86, ATG101, ACVR1B, ACVRL1) 0.457714057795349 30 0.0261046743513208 1.26754485808893 897 0.641877984185359 6 3 3 -7.04424534075923 LTS-030 chr12 52774368 52774823 456 * KRT84 NA 0 NA 0.884 1 NA NA NA NA NA LTS-030 chr12 52774824 53225342 450519 * c(KRT71, KRT74, KRT72, KRT6C, KRT73, KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT82, KRT84, KRT76, KRT75) 0.43151305554231 54 0.0508689138975671 0.966833640391439 1240 0.404475240003593 4 2 2 -6.74666041028316 LTS-030 chr12 53225343 53227649 2307 * KRT79 NA 0 NA 1.556 1 NA NA NA NA NA LTS-030 chr12 53227650 54802595 1574946 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, SP7, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, IGFBP6, ITGA5, ITGB7, KRT8, KRT18, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, CSAD, ATP5G2, PFDN5, GPR84, PRR13, CALCOCO1, RARG, C12orf10, SP1, TARBP2, NA NA NA NA NA NA NA NA NA LTS-030 MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ESPL1) 0.45119165557135 48 0.0460035796864943 1.12119728994848 3647 0.615472170370881 4 2 2 -6.8098414658831 LTS-030 NA NA NA NA LTS-030 chr12 54802596 55041081 238486 * c(DCD, GTSF1, NCKAP1L, ITGA5, PDE1B, PPP1R1A, GLYCAM1, LACRT) 0.443922888746535 7 0.0502972118890255 0.858092231159915 494 0.354533865274294 4 2 2 -6.7661901511303 LTS-030 chr12 55041082 55042015 934 * DCD NA 0 NA 0.468 1 NA NA NA NA NA LTS-030 chr12 55042016 56031448 989433 * c(DCD, MUCL1, OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2, NEUROD4, TESPA1) 0.449547347219755 13 0.0376256868069183 0.569349519844957 649 0.235627109260185 2 1 1 -6.81011917993244 LTS-030 chr12 56031449 57140154 1108706 * c(BLOC1S1-RDH5, CDK2, RNF41, GDF11, CNPY2, PTGES3, BAZ2A, OR10P1, MYL6B, CS, DGKA, METTL7B, ERBB3, ESYT1, BLOC1S1, SNORD59A, GLS2, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, ITGA7, MIP, MMP19, MYL6, NACA, PA2G4, ATP5B, IL23A, PRIM1, RAB5B, RBMS2, RDH5, RPL41, RPS26, IKZF4, PMEL, SMARCC2, STAT2, SUOX, SNORD59B, NABP2, PYM1, SARNP, ZC3H10, DNAJC14, TIMELESS, COQ10A, CD63, PAN2) 0.413950088894947 19 0.144574794985258 1.08854069507525 4090 0.543032145996991 5 3 2 -6.7548847753891 LTS-030 chr12 57140155 57140496 342 * PRIM1 NA 0 NA 0.785 1 NA NA NA NA NA LTS-030 chr12 57140497 59314301 2173805 * c(AGAP2-AS1, MIR1228, LOC100506844, TSFM, CTDSP2, CDK4, DCTN2, AVIL, OS9, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, SDR9C7, LRIG3, CYP27B1, DDIT3, DTX3, R3HDM2, NEMP1, STAC3, B4GALNT1, METTL21B, GLI1, INHBC, KIF5A, LRP1, MIR26A2, MARS, METTL1, MYO1A, NAB2, PRIM1, NDUFA4L2, TSPAN31, ARHGAP9, SHMT2, SLC26A10, STAT6, TAC3, PIP4K2C, INHBE, RDH16, HSD17B6, ATP23, MARCH9, ZBTB39) 0.416910324668743 84 0.0794674209867089 0.979518050567657 4289 0.426698590314117 4 2 2 -6.7806225283294 LTS-030 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.397 1 NA NA NA NA NA LTS-030 chr12 59445677 62652686 3207010 * c(FAM19A2, SLC16A7) 0.473790584113754 2 0.0106066017177981 0.657194139942894 219 0.326838036288201 2 1 1 -10.3713904843296 LTS-030 chr12 62652687 62654132 1446 * c(FAM19A2, USP15) NA 0 NA 2.515 1 NA NA NA NA NA LTS-030 chr12 62654133 63952864 1298732 * c(MON2, LINC01465, DPY19L2, MIRLET7I, AVPR1A, PPM1H, USP15) 0.392523969575656 2 0.0940452018978108 1.02357194303703 700 0.59222697959715 5 3 2 -6.81174817657067 LTS-030 chr12 63952865 63974498 21634 * DPY19L2 NA 0 NA 0.378790600858601 41 0.10869783582112 1 NA NA -5.76715308424761 LTS-030 chr12 63974499 63974514 16 * DPY19L2 NA 0 NA 0.765 1 NA NA NA NA NA LTS-030 chr12 63974515 66583138 2608624 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, FLJ41278, TMBIM4, SRGAP1, MIR548C, HMGA2, LLPH) 0.441677380446928 16 0.0618174395565955 1.04701073630791 2148 0.607510324440839 4 2 2 -6.74341537804934 LTS-030 chr12 66583139 70003439 3420301 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, CPM, GRIP1, IFNG, LRRC10, LYZ, MDM2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, DYRK2, HELB) 0.443552297389219 33 0.0457564782629772 0.894243653351634 2224 0.553178176875475 4 2 2 -6.82258040795007 LTS-030 chr12 70003440 70003509 70 * LRRC10 NA 0 NA 0.605 1 NA NA NA NA NA LTS-030 chr12 70003510 70048019 44510 * c(BEST3, LRRC10) 0.288 1 NA 0.63357100080181 55 0.27768213060362 2 2 0 -5.76551320654395 LTS-030 chr12 70048020 70063641 15622 * BEST3 0.2 1 NA 0.56109694656161 37 0.187857015461915 2 2 0 -5.76553333609729 LTS-030 chr12 70063642 108641849 38578208 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1252, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, LOC100507377, POC1B-GALNT4, MIR4699, MIR548AL, MIR5700, PLXNC1, CKAP4, METAP2, GLIPR1, KERA, KRR1, PRDM4, PWP1, NUDT4, OSBPL8, RAB3IP, DEPDC4, CCDC38, C12orf45, TPH2, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, CRY1, AMDHD1, GLIPR1L2, TSPAN19, BEST3, E2F7, SOCS2-AS1, CEP83-AS1, CSRP2, KRT19P2, NA NA NA NA NA NA NA NA NA LTS-030 TMTC2, TMTC3, C12orf50, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, ZFC3H1, FAM71C, RMST, CCER1, ELK3, PHLDA1, RAB21, UHRF1BP1L, KIAA1033, ZDHHC17, SLC17A8, TTC41P, TCP11L2, LINC01619, GLIPR1L1, MGAT4C, UTP20, KCNMB4, POC1B, OTOGL, TRHDE-AS1, GAS2L3, LINC00485, MRPL42, CCDC59, HCFC2, TRHDE, HAL, APAF1, LINC00936, C12orf74, IGF1, PTPRQ, C12orf42, KCNC2, C12orf75, ARL1, MKRN9P, LTA4H, LUM, MIR135A2, KITLG, ASCL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 LINC00615, PLEKHG7, MIR331, MYBPC1, MYF5, MYF6, PPP1R12A, NAP1L1, NFYB, CNOT2, ATP2B1, NTS, EID3, SYCP3, CHST11, PAH, PAWR, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, SLC6A15, RIC8B, APPL2, TMEM19, ATXN7L3B, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPRB, PTPRR, NTN4, RFX4, LOC643339, LOC643711, LOC643770, ACTR6, TBC1D15, SNRPF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 SNORA53, SYT1, MIR617, MIR618, BTG1, TDG, TSPAN8, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, MRS2P2, UBE2N, NUP37, GNPTAB, ACSS3, BBS10, CEP290, MTERF2, ALX1, GLT8D2, THAP2, USP44, SLC41A2, EEA1, LRRIQ1, METTL25, CAPS2, PPFIA2, LGR5, GALNT4, CRADD, LIN7A, SOCS2, NAV3, TMEM263, C12orf29, RASSF9, WSCD2, NUAK1, NR1H4) 0.162468316682499 278 0.0729616223270663 0.56442986281572 19357 0.362567283972549 2 2 0 -7.29349117647565 LTS-030 NA NA NA NA LTS-030 chr12 108641850 108913578 271729 * c(FICD, CMKLR1, WSCD2) NA 0 NA 0.414214020739479 240 0.168510840858238 1 NA NA -5.77331863593286 LTS-030 chr12 108913579 120106003 11192425 * c(LINC01405, USP30-AS1, SH2B3, LINC00173, MIR4472-2, MIR4497, ARPC3, TRAFD1, ERP29, SDS, SDSL, IQCD, ALKBH2, FOXN4, RAD9B, FAM109A, LINC00934, PPTC7, CCDC63, CCDC60, DAO, DTX1, PLBD2, ALDH2, RPH3A, FBXO21, CUX2, MED13L, ISCU, CORO1C, TBX5-AS1, FBXW8, HSPB8, MYO1H, HECTD4, KSR2, IFT81, FAM216A, ACACB, MMAB, TMEM119, CFAP73, TMEM233, C12orf76, MVK, MYL2, NOS1, ATP2A2, OAS1, OAS2, OAS3, PEBP1, GPN3, NA NA NA NA NA NA NA NA NA LTS-030 GLTP, MAPKAPK5-AS1, TAOK3, ANAPC7, VPS29, TPCN1, SSH1, VSIG10, TESC, PPP1CC, SVOP, PRKAB1, WSB2, PTPN11, TRPV4, RFC5, RPL6, ATXN2, SELPLG, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, UNG, DDX54, TCTN1, C12orf49, NAA25, SLC8B1, ACAD10, BRAP, KCTD10, TCHP, HVCN1, RASAL1, SRRM4, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, SART3, GIT2, RBM19) 0.170729480704013 111 0.0747888953640771 0.616618784218545 11142 0.444476145698464 2 2 0 -6.7655989683073 LTS-030 NA NA NA NA LTS-030 chr12 120106004 120106087 84 * PRKAB1 NA 0 NA 0.739 1 NA NA NA NA NA LTS-030 chr12 120106088 120168417 62330 * c(MIR1178, CIT, PRKAB1) NA 0 NA 0.883862513645846 237 0.287499614718235 3 NA NA -5.76897090106999 LTS-030 chr12 120168418 120172004 3587 * CIT NA 0 NA 0.436 1 NA NA NA NA NA LTS-030 chr12 120172005 123109294 2937290 * c(PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4700, CAMKK2, GCN1, RAB35, CIT, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, LRRC43, MORN3, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, BICDL1, NA NA NA NA NA NA NA NA NA LTS-030 CABP1, KNTC1, MLEC, RNF10) 0.164791711766814 91 0.0553436174740683 0.656616857600741 5055 0.358379519096747 2 2 0 -6.84740116414036 LTS-030 NA NA NA NA LTS-030 chr12 123109295 123110715 1421 * KNTC1 NA 0 NA 0.248 1 NA NA NA NA NA LTS-030 chr12 123110716 123200612 89897 * c(HCAR2, HCAR3, KNTC1) 0.3566065174934 4 0.0651632565177647 0.277781328258125 111 0.216510019855407 0 0 0 -7.68956867698636 LTS-030 chr12 123200613 123200706 94 * HCAR3 NA 0 NA 0.651 1 NA NA NA NA NA LTS-030 chr12 123200707 124809168 1608462 * c(MIR4304, MIR3908, LOC100507091, ZNF664-FAM101A, MPHOSPH9, TMED2, SNRNP35, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, NCOR2) 0.202162536534395 57 0.101732670960966 0.64226883262453 3032 0.309027723754806 2 2 0 -6.86116377504181 LTS-030 chr12 124809169 125512730 703562 * c(MIR5188, BRI3BP, DHX37, UBC, SCARB1, NCOR2) 0.142690775845369 15 0.04645684121029 0.825730763852318 721 0.409381862611423 3 3 0 -6.83511488889491 LTS-030 chr12 125512731 131275484 5762754 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, AACS, TMEM132C, PIWIL1) 0.191650776256244 47 0.0654740770389878 0.52490349592618 1487 0.427142293012759 2 2 0 -7.14264900940895 LTS-030 chr12 131275485 131275530 46 * STX2 NA 0 NA 0.87 1 NA NA NA NA NA LTS-030 chr12 131275531 133331838 2056308 * c(LOC100130238, LRCOL1, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.194272067791176 22 0.0851839999812984 0.658801668438029 2293 0.384412153224732 2 2 0 -6.87812655007438 LTS-030 chr12 133331839 133332049 211 * ANKLE2 NA 0 NA 2.337 1 NA NA NA NA NA LTS-030 chr12 133332050 133498825 166776 * c(ZNF605, ANKLE2, GOLGA3, CHFR) 0.13114989747429 3 0.0406324993078201 0.832241512227856 495 0.494859830140339 3 3 0 -6.75422644489009 LTS-030 chr12 133498826 133728487 229662 * c(ZNF605, ZNF891, ZNF268, ZNF10, ZNF140) 0.19983651709689 3 0.122871206282568 0.562015290540918 586 0.292188617007498 2 2 0 -6.78729309682287 LTS-030 chr12 133728488 133732080 3593 * c(ZNF268, ZNF10) NA 0 NA 0.381 1 NA NA NA NA NA LTS-030 chr12 133732081 133811988 79908 * c(ZNF268, ANHX, ZNF10) 0.158 1 NA 0.409920931599193 281 0.22717426621271 1 1 0 -5.76519137295008 LTS-030 chr12 133811989 133812708 720 * ANHX NA 0 NA 0.671753318855448 15 0.215290125401139 2 NA NA -5.76453313689051 LTS-030 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.217 1 NA 0.854175391951332 3 0.228460791676238 3 3 0 -5.78096838563878 LTS-030 chr13 19600476 21553971 1953496 * c(ANKRD26P3, LINC00421, MIR4499, RNU6-52P, GJB6, EEF1AKMT1, LATS2, GJA3, GJB2, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, TUBA3C, ZMYM2, IFT88, ZMYM5, TPTE2) 0.217259821881978 27 0.0981962683736359 0.548295675170948 1320 0.316670066232222 2 2 0 -6.98759435772033 LTS-030 chr13 21553972 21557771 3800 * LATS2 NA 0 NA 0.568059271654149 16 0.122076188641902 2 NA NA -5.76483499493416 LTS-030 chr13 21557772 21727828 170057 * c(SAP18, SKA3, LATS2) 0.413 1 NA 0.730830306245794 117 0.228512604926029 3 3 0 -5.78008468242782 LTS-030 chr13 21727829 21742311 14483 * SKA3 0.444371270092491 13 0.0432058281918492 0.894543009390826 70 0.508747502117674 4 2 2 -6.74398894410239 LTS-030 chr13 21742312 21750538 8227 * c(SKA3, MRPL57) 0.247 1 NA 0.736677569388658 15 0.18353258436531 3 3 0 -5.76538832023811 LTS-030 chr13 21750539 21974693 224155 * c(SKA3, ZDHHC20, MIPEPP3, MRPL57) 0.157 1 NA 0.931082176250677 88 0.776925412879952 4 4 0 -5.76554605382332 LTS-030 chr13 21974694 21975704 1011 * ZDHHC20 NA 0 NA 0.523 1 NA NA NA NA NA LTS-030 chr13 21975705 25517907 3542203 * c(MIR2276, SACS-AS1, LINC00327, LINC00424, SPATA13-AS1, PARP4, MICU2, SPATA13, FGF9, ZDHHC20, SACS, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, C1QTNF9B-AS1, TNFRSF19, CENPJ, RNF17, SGCG, BASP1P1, TPTE2P1) 0.161085494289897 30 0.0537267351415058 0.517732540811138 1798 0.331920341359409 2 2 0 -7.11900743889061 LTS-030 chr13 25517908 25525465 7558 * TPTE2P1 NA 0 NA 0.289 1 NA NA NA NA NA LTS-030 chr13 25525466 25603513 78048 * TPTE2P1 0.258144576407496 2 0.0417193000900063 0.191540668172262 40 0.134063587572542 1 1 0 -7.91328500234 LTS-030 chr13 25603514 25603532 19 * character(0) NA 0 NA 0.216 1 NA NA NA NA NA LTS-030 chr13 25603533 25670213 66681 * character(0) NA 0 NA 0.599 1 NA NA NA NA NA LTS-030 chr13 25670214 25670851 638 * PABPC3 0.491 1 NA 0.489735847187277 13 0.291748992044487 2 2 0 -5.76459165859012 LTS-030 chr13 25670852 25671292 441 * PABPC3 0.435822576410004 15 0.0436048271683417 0.734493005463909 36 0.374471246273615 2 1 1 -6.73561056209554 LTS-030 chr13 25671293 25737583 66291 * PABPC3 0.187 1 NA 0.420626169819589 93 0.246445336495374 1 1 0 -5.76637474681449 LTS-030 chr13 25737584 37422929 11685346 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, SERTM1, SMAD9, ATP5EP2, NA NA NA NA NA NA NA NA NA LTS-030 LINC00544, POLR1D, POMP, ATP8A2, UBL3, SOHLH2, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.166238336883643 102 0.0719262521638639 0.53961727812039 6577 0.323703595179609 2 2 0 -7.3823271665378 LTS-030 NA NA NA NA LTS-030 chr13 37422930 37427519 4590 * SMAD9 NA 0 NA 1.027 1 NA NA NA NA NA LTS-030 chr13 37427520 37622782 195263 * c(EXOSC8, ALG5, SMAD9, SUPT20H) NA 0 NA 0.67580074330165 269 0.28820118356889 2 NA NA -5.78497940390032 LTS-030 chr13 37622783 37625581 2799 * SUPT20H NA 0 NA 0.396 1 NA NA NA NA NA LTS-030 chr13 37625582 39585605 1960024 * c(LINC00366, LINC00571, POSTN, CSNK1A1L, STOML3, FREM2, LINC00547, UFM1, SUPT20H, TRPC4, PROSER1) 0.220706711179365 8 0.124286247946309 0.453495935773791 811 0.262662555723214 1 1 0 -7.03727940348816 LTS-030 chr13 39585606 39586174 569 * PROSER1 NA 0 NA 0.703 1 NA NA NA NA NA LTS-030 chr13 39586175 53254312 13668138 * c(LINC00462, TPT1-AS1, MIR320D1, MIR4305, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, LHFP, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, NA NA NA NA NA NA NA NA NA LTS-030 TPTE2P3, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, NHLRC3, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, COG6, RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 NAA16, RNASEH2B, DHRS12, RUBCNL, PROSER1, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.168451856781655 123 0.079907559380292 0.591686488147386 7636 0.61095919591474 2 2 0 -6.73727209553284 LTS-030 NA NA NA NA LTS-030 chr13 53254313 53261777 7465 * SUGT1 NA 0 NA 0.307 1 NA NA NA NA NA LTS-030 chr13 53261778 70681470 17419693 * c(MIR1297, MIR759, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, OLFM4, SUGT1, LECT1, PCDH17, OR7E156P, LINC00550, PCDH8, PCDH9, KLHL1, ATXN8OS, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3) 0.204559452491486 14 0.0452743165190126 0.505725008233027 984 0.2525363174719 2 2 0 -9.97785757797033 LTS-030 chr13 70681471 76111702 5430232 * c(LINC00381, LINC00348, PIBF1, KLF12, DACH1, COMMD6, DIS3, LINC00347, MZT1, KLHL1, ATXN8OS, CTAGE11P, KLF5, BORA, TBC1D4) 0.161989040767474 25 0.0514814853450571 0.645221434582558 1164 0.307028572764874 2 2 0 -6.92184803378074 LTS-030 chr13 76111703 76124151 12449 * c(COMMD6, UCHL3) 0.132 1 NA 0.784045898584869 17 0.318983000192431 3 3 0 -5.76443774744936 LTS-030 chr13 76124152 77844676 1720525 * c(MYCBP2-AS1, KCTD12, CLN5, MYCBP2, FBXL3, LMO7, BTF3P11, LMO7DN, ACOD1, UCHL3) 0.125453372622745 25 0.0633771778061051 0.618178835681947 1147 0.506901387380657 2 2 0 -6.96232861379819 LTS-030 chr13 77844677 77847590 2914 * MYCBP2 NA 0 NA 0.885 1 NA NA NA NA NA LTS-030 chr13 77847591 95227094 17379504 * c(MIR3665, RBM26-AS1, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00446, LINC00559, NDFIP2-AS1, RNF219-AS1, SPRY2, SLITRK1, SLAIN1, LINC00410, DCT, EDNRB, GPC5, MYCBP2, TGDS, SLITRK5, MIR19B1, MIR17HG, POU4F1, NDFIP2, RBM26, MIR4500HG, MIR622, RNF219, SLITRK6, SCEL) 0.0895002399114008 6 0.0579082607808823 0.88123487354088 1417 0.429557714726683 3 3 0 -7.42824141737439 LTS-030 chr13 95227095 95228532 1438 * TGDS NA 0 NA 1.522 1 NA NA NA NA NA LTS-030 chr13 95228533 101717995 6489463 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, ABCC4, SOX21, RNF113B, GPR180, CLYBL, GPR183, DZIP1, DOCK9, TGDS, NALCN, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, PCCA, UGGT2, DNAJC3, RAP2A, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, CLDN10, TM9SF2) 0.0894029180928237 57 0.0659145655365693 1.01375610758653 3098 0.516481014942562 4 4 0 -6.74799560951543 LTS-030 chr13 101717996 101720177 2182 * NALCN NA 0 NA 0.809 1 NA NA NA NA NA LTS-030 chr13 101720178 103444476 1724299 * c(MIR2681, MIR4705, METTL21C, FGF14, NALCN, FGF14-IT1, FGF14-AS2, CCDC168, TPP2, KDELC1, TEX30, ITGBL1) 0.11317087368644 28 0.0489625707386094 0.703580786033683 1099 0.336327466378354 3 3 0 -6.90574900100938 LTS-030 chr13 103444477 103445607 1131 * KDELC1 NA 0 NA 1.178 1 NA NA NA NA NA LTS-030 chr13 103445608 109311775 5866168 * c(BIVM-ERCC5, MIR548AS, LINC00443, TNFSF13B, METTL21EP, LINC00343, EFNB2, ERCC5, MYO16, DAOA, DAOA-AS1, LINC00551, LIG4, BIVM, ARGLU1, SLC10A2, LINC00460, FAM155A, KDELC1, ABHD13) 0.120528300056334 15 0.0354317586891975 0.915822412912845 893 0.44831295853213 3 3 0 -7.04500714195859 LTS-030 chr13 109311776 109438084 126309 * MYO16 0.377 1 NA 0.704322680849993 25 0.474777667264724 3 3 0 -5.76979605277652 LTS-030 chr13 109438085 109507958 69874 * MYO16 0.407 1 NA 1.05847222989484 34 0.727085390979217 4 4 0 -5.764666213816 LTS-030 chr13 109507959 109518455 10497 * MYO16 NA 0 NA 1.57 1 NA NA NA NA NA LTS-030 chr13 109518456 114622597 5104142 * c(LINC00552, MCF2L-AS1, GAS6-AS2, COL4A2-AS1, MYO16-AS1, TUBGCP3, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, IRS2, PROZ, ARHGEF7) 0.343396742644414 104 0.0765708137985061 1.48517282228533 3818 0.742207453799511 6 4 2 -6.76883995043763 LTS-030 chr13 114622598 115071323 448726 * c(LINC00565, RASA3, UPF3A, CDC16) NA 0 NA 1.48948954256346 315 0.632705546700996 6 NA NA -5.76692038272504 LTS-030 chr13 115071324 115089243 17920 * CHAMP1 NA 0 NA 0.594 1 NA NA NA NA NA LTS-030 chr13 115089244 115092817 3574 * CHAMP1 NA 0 NA 0.861512143266851 77 0.367085636686665 3 NA NA -5.76449920855749 LTS-030 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.5 1 NA 1.02577633114381 13 0.515849622790725 4 4 0 -5.76553130017164 LTS-030 chr14 20201973 20404847 202875 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.42383426978575 8 0.100386307404375 1.16024328534709 195 0.393872835066779 5 3 2 -6.74396151232171 LTS-030 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.369 1 NA NA NA NA NA LTS-030 chr14 20443534 20712010 268477 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4K15) 0.444888020280961 18 0.0404903361342116 0.624035028179097 279 0.809332810214432 2 1 1 -6.74770541566133 LTS-030 chr14 20712011 20754345 42335 * character(0) NA 0 NA 6.9 1 NA NA NA NA NA LTS-030 chr14 20754346 20942767 188422 * c(SNORD126, PARP2, KLHL33, APEX1, PNP, OSGEP, CCNB1IP1, TEP1, RPPH1, TMEM55B, TTC5) 0.448740599490548 24 0.0379916085318927 0.96567470476386 900 0.450059652832159 4 2 2 -6.77583091469453 LTS-030 chr14 20942768 21539064 596297 * c(EDDM3A, RNASE11, TPPP2, RNASE8, ANG, SLC39A2, RNASE10, OR6S1, RNASE9, RNASE13, PNP, RNASE12, ARHGEF40, NDRG2, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, RNASE7) 0.457303769396903 30 0.0353940218343324 0.761718545622823 743 0.350741103757185 2 1 1 -7.05926936592395 LTS-030 chr14 21539065 21541147 2083 * ARHGEF40 NA 0 NA 2.023 1 NA NA NA NA NA LTS-030 chr14 21541148 21966287 425140 * c(SUPT16H, LINC00641, HNRNPC, SNORD8, OR5AU1, ZNF219, ARHGEF40, METTL3, RPGRIP1, CHD8, TMEM253, SNORD9, RAB2B, TOX4) 0.455538461958551 32 0.0331997710592573 1.03131070597072 1179 0.507161747328576 4 2 2 -6.88553858585654 LTS-030 chr14 21966288 21966393 106 * c(METTL3, TOX4) NA 0 NA 0.476 1 NA NA NA NA NA LTS-030 chr14 21966394 22534103 567710 * c(OR10G3, OR10G2, OR4E2, METTL3, SALL2, TOX4) 0.452184229275667 28 0.0394537268308909 0.777805098130501 647 0.317814295499641 4 2 2 -7.00864464339228 LTS-030 chr14 22534104 22534457 354 * character(0) NA 0 NA 1.064 1 NA NA NA NA NA LTS-030 chr14 22534458 23834887 1300430 * c(BCL2L2-PABPN1, MIR4707, EFS, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, SLC22A17, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, BCL2L2, C14orf93, ABHD4, CDH24, PABPN1, AJUBA, SLC7A7, PPP1R3E) 0.450488356801469 60 0.0398171633491782 1.06401570311684 2946 0.51560014217614 4 2 2 -6.79698004611734 LTS-030 chr14 23834888 24602094 767207 * c(MIR208B, DHRS2, DHRS4, CMTM5, FITM1, NGDN, DHRS4L2, MIR208A, MYH6, MYH7, NRL, PCK2, DHRS4-AS1, IL25, DHRS4L1, THTPA, DCAF11, JPH4, ZFHX2, AP1G2, CARMIL3, CPNE6) 0.422166822715744 21 0.0651290294430255 0.93642343104791 1933 0.944526917286402 4 2 2 -6.77339240722899 LTS-030 chr14 24602095 24602115 21 * character(0) NA 0 NA 1.417 1 NA NA NA NA NA LTS-030 chr14 24602116 24617121 15006 * c(EMC9, RNF31, PSME1, PSME2) 0.391373836382348 3 0.00288675134594816 1.71147367641994 144 0.846443571822552 13 8 5 -6.79102675288712 LTS-030 chr14 24617122 24912092 294971 * c(NEDD8-MDP1, IRF9, TM9SF1, RIPK3, DHRS1, LTB4R, MDP1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, NEDD8, NFATC4, GMPR2, RNF31, LTB4R2, SDR39U1, NYNRIN, RABGGTA, CBLN3, TGM1, IPO4, REC8) 0.459037656817117 47 0.038007241629474 1.05858372202461 2092 0.511963568832442 4 2 2 -6.90325119692011 LTS-030 chr14 24912093 24970725 58633 * character(0) NA 0 NA 0.738 1 NA NA NA NA NA LTS-030 chr14 24970726 28734517 3763792 * c(MIR4307, LINC00645, CMA1, CTSG, STXBP6, GZMH, GZMB, NOVA1) 0.423491403877376 9 0.0476340214552582 0.757117351351692 420 0.428364703482536 3 2 1 -7.36748774018377 LTS-030 chr14 28734518 28734687 170 * character(0) NA 0 NA 1.044 1 NA NA NA NA NA LTS-030 chr14 28734688 32628934 3894247 * c(LOC100506071, MIR548AI, AP4S1, DTD2, COCH, FOXG1, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, LINC01551, ARHGAP5, G2E3, PRKD1, MIR624, NUBPL, ARHGAP5-AS1) 0.416310007358309 31 0.11692502882442 0.955903102293034 1808 0.520771087251378 4 2 2 -6.77230401437721 LTS-030 chr14 32628935 32736496 107562 * character(0) NA 0 NA 0.48 1 NA NA NA NA NA LTS-030 chr14 32736497 33015556 279060 * AKAP6 0.45527076721491 2 0.0106066017177982 0.545349938055311 142 0.234261098587575 2 1 1 -7.95944292770253 LTS-030 chr14 33015557 36337217 3321661 * c(CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, IGBP1P1, FAM177A1, NFKBIA, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, BRMS1L, INSM2, AKAP6, KIAA0391) 0.448395158024464 36 0.0412287078284822 1.00978280600723 1817 0.55272745144707 4 2 2 -6.76705794530341 LTS-030 chr14 36337218 36339517 2300 * BRMS1L NA 0 NA 0.467 1 NA NA NA NA NA LTS-030 chr14 36339518 45414886 9075369 * c(SLC25A21-AS1, LOC100288846, MIR4503, PTCSC3, LINC00609, SEC23A, NA, C14orf28, TRAPPC6B, MIPOL1, LRFN5, CLEC14A, SFTA3, FBXO33, NKX2-8, LINC00639, FOXA1, MIA2, PAX9, MBIP, PNN, KLHL28, SSTR1, NKX2-1, FSCB, BRMS1L, GEMIN2, SLC25A21) 0.419115698225464 31 0.0956850456288194 0.858229802818877 2101 0.509611529076567 3 2 1 -6.97056804777617 LTS-030 chr14 45414887 51027123 5612237 * c(SNORD127, MIR548Y, LINC00871, LINC00648, NA, MAP4K5, LRR1, KLHDC1, RPL10L, MDGA2, LINC01599, FKBP3, FAM179B, KLHDC2, ATP5S, LINC01588, ARF6, MGAT2, ATL1, POLE2, KLHL28, PRPF39, DNAAF2, MIS18BP1, FANCM, RPL36AL, RPS29, SOS2, VCPKMT, L2HGDH, CDKL1, NEMF) 0.4408383597736 41 0.0429464925169937 1.06701391742171 2367 0.631163124762444 4 2 2 -6.76995762536845 LTS-030 chr14 51027124 51054525 27402 * ATL1 NA 0 NA 0.931 1 NA NA NA NA NA LTS-030 chr14 51054526 52922238 1867713 * c(FRMD6-AS2, TRIM9, FRMD6, FRMD6-AS1, ABHD12B, NID2, LINC00640, ATL1, NIN, C14orf166, GNG2, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, TMX1) 0.458508106379469 33 0.0358548209006569 0.835369613646723 1632 0.376337997982419 4 2 2 -7.15752375747986 LTS-030 chr14 52922239 52923703 1465 * TXNDC16 NA 0 NA 1.358 1 NA NA NA NA NA LTS-030 chr14 52923704 57085476 4161773 * c(KTN1-AS1, MIR4308, MIR5580, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, SOCS4, ATG14, SAMD4A, GCH1, GMFB, GPR137C, ERO1A, TBPL2, KTN1, LGALS3, TMEM260, FBXO34, PSMC6, PELI2, TXNDC16, RPL13AP3, LINC00520, GNPNAT1, BMP4, STYX, DDHD1, MAPK1IP1L, DLGAP5) 0.439109283893136 36 0.0391732314660415 1.00188308849629 2822 0.634858658193859 4 2 2 -6.73313807515618 LTS-030 chr14 57085477 57088247 2771 * TMEM260 NA 0 NA 0.644 1 NA NA NA NA NA LTS-030 chr14 57088248 60865178 3776931 * c(OTX2-AS1, EXOC5, L3HYPDH, NAA30, C14orf37, DAAM1, TIMM9, SLC35F4, LRRC9, PSMA3-AS1, TOMM20L, OTX2, DACT1, JKAMP, DHRS7, TMEM260, PPM1A, C14orf105, AP5M1, ACTR10, PSMA3, ARID4A, RTN1, PCNX4, GPR135, CCDC175, KIAA0586) 0.403456143680018 46 0.0683572916642511 0.840863457593582 2756 0.63325043993461 3 2 1 -6.86088157532508 LTS-030 chr14 60865179 60867038 1860 * character(0) NA 0 NA 0.311617929476832 47 0.163087523252142 1 NA NA -5.76693011141186 LTS-030 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.766 1 NA NA NA NA NA LTS-030 chr14 60899979 65068406 4168428 * c(HIF1A-AS2, WDR89, GPHB5, PPP1R36, SLC38A6, TMEM30B, ESR2, ZBTB1, SYNE2, KCNH5, HIF1A, C14orf39, HSPA2, FLJ22447, MNAT1, TEX21P, MTHFD1, SIX6, SIX4, PPP2R5E, PRKCH, RHOJ, TRMT5, LINC00643, SIX1, SNAPC1, ZBTB25, SGPP1, SYT16, AKAP5) 0.430827805138025 48 0.0537385275567877 0.827048231358124 3230 0.442969355329916 4 2 2 -7.17331220746043 LTS-030 chr14 65068407 65182396 113990 * PLEKHG3 NA 0 NA 1.659 1 NA NA NA NA NA LTS-030 chr14 65182397 65246022 63626 * c(PLEKHG3, SPTB) 0.386395657093391 8 0.0714537812655345 1.16568321676435 309 0.52535357178144 8 5 3 -6.75920418345175 LTS-030 chr14 65246023 65246446 424 * SPTB NA 0 NA 0.897 1 NA NA NA NA NA LTS-030 chr14 65246447 69117642 3871196 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, RDH12, FAM71D, TMEM229B, EIF2S1, FNTB, ZFYVE26, FUT8, PLEK2, GPX2, RAB15, ARG2, MAX, LINC00238, RDH11, ATP6V1D, PIGH, PLEKHH1, RAD51B, MPP5, FUT8-AS1, SPTB, CHURC1) 0.430588328493744 74 0.0469222300010455 0.818599669250585 2493 0.42724284045985 4 2 2 -7.2214835656265 LTS-030 chr14 69117643 69254334 136692 * RAD51B NA 0 NA 1.568 1 NA NA NA NA NA LTS-030 chr14 69254335 69262649 8315 * ZFP36L1 0.182 1 NA 1.72688643410787 121 1.44338795278033 8 8 0 -5.76441452005507 LTS-030 chr14 69262650 70527475 1264826 * c(LOC100289511, ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.412394000847083 17 0.111581215475809 0.963893875589637 1250 0.490574134217419 4 2 2 -6.77030332199489 LTS-030 chr14 70527476 70527546 71 * SLC8A3 NA 0 NA 0.513 1 NA NA NA NA NA LTS-030 chr14 70527547 70991214 463668 * c(SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SLC8A3, ADAM21, ADAM20) 0.336826758823124 3 0.0730821455623739 0.55355025260785 303 0.303626897018093 3 2 1 -7.26221947555508 LTS-030 chr14 70991215 73989599 2998385 * c(MED6, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, SNORD56B, HEATR4, MAP3K9, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, ADAM20, PAPLN, RGS6) 0.405858048682804 33 0.0924347743005845 0.84999553157835 2215 0.398284099488973 3 2 1 -6.84829974936201 LTS-030 chr14 73989600 74128846 139247 * c(ACOT2, ACOT4, HEATR4, ACOT1, ACOT6, DNAL1) 0.472221005087247 4 0.0251064400768674 0.622262649211092 189 0.453034831609399 2 1 1 -7.65128101254478 LTS-030 chr14 74128847 74138188 9342 * DNAL1 NA 0 NA 1.472 1 NA NA NA NA NA LTS-030 chr14 74138189 74353124 214936 * c(MIR4505, PTGR2, ZNF410, DNAL1, ELMSAN1, PNMA1) 0.434369961454175 11 0.0367759803033546 1.07989162523952 379 0.420053443780407 4 2 2 -6.745419071748 LTS-030 chr14 74353125 74353204 80 * ZNF410 0.409 1 NA 0.473 1 NA NA NA NA NA LTS-030 chr14 74353205 74947129 593925 * c(MIR4709, NPC2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.428308458965505 5 0.0456705594447889 0.77449496168331 1147 0.358186354307442 4 2 2 -6.93968443166783 LTS-030 chr14 74947130 75052774 105645 * c(NPC2, ISCA2, LTBP2) 0.400562754986118 3 0.118744824448619 1.16764134553725 334 0.399371738271802 5 3 2 -6.7378410119489 LTS-030 chr14 75052775 75070238 17464 * LTBP2 NA 0 NA 0.825 1 NA NA NA NA NA LTS-030 chr14 75070239 89221019 14150781 * c(MIR1260A, DIO2-AS1, LINC00911, BATF, AHSA1, TMED10, PTPN21, C14orf1, IFT43, NOXRED1, JDP2, LRRC74A, ISM2, CEP128, SAMD15, EML5, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, FLRT2, GALC, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, LTBP2, FCF1, PGF, KCNK10, FLVCR2, GPATCH2L, SPATA7, YLPM1, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, NA NA NA NA NA NA NA NA NA LTS-030 TSHR, LINC01220, ZC2HC1C, ZC3H14, SLIRP, RPS6KL1, GPR65, STON2, CIPC, ALKBH1, EIF2B2, NEK9, NRXN3, SPTLC2, ACYP1, AREL1) 0.43244874041089 126 0.0808578611780309 0.900672081943837 7158 0.450779275420499 4 2 2 -7.16215535917292 LTS-030 NA NA NA NA LTS-030 chr14 89221020 89258731 37712 * EML5 NA 0 NA 6.169 1 NA NA NA NA NA LTS-030 chr14 89258732 89878865 620134 * c(FOXN3, TTC8, EML5) 0.403442421325629 8 0.0673243746987035 1.22524465334335 276 0.653030960523193 5 3 2 -6.74065294269674 LTS-030 chr14 89878866 89884022 5157 * c(FOXN3, FOXN3-AS1) 0.318 1 NA 1.73468123751983 5 0.616323210661419 8 8 0 -5.76442207673361 LTS-030 chr14 89884023 93389435 3505413 * c(SNORA11B, FBLN5, FOXN3, TC2N, SLC24A4, TTC7B, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, TDP1, LGMN, KCNK13, PSMC1, CATSPERB, RIN3, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.350409649752265 72 0.088635191561245 1.41310476923201 3070 0.709363811094738 6 4 2 -6.73599336950397 LTS-030 chr14 93389436 93398031 8596 * CHGA 0.46 1 NA 1.67653739411889 39 0.66083495625323 7 7 0 -5.76443469480999 LTS-030 chr14 93398032 94038412 640381 * c(CHGA, TMEM251, ITPK1-AS1, COX8C, ITPK1, UBR7, BTBD7, UNC79, MOAP1, GON7) 0.427319111879266 2 0.0685893577750951 1.35034608508985 735 0.667377982027227 6 3 3 -6.7505070208101 LTS-030 chr14 94038413 94038967 555 * UNC79 NA 0 NA 0.67 1 NA NA NA NA NA LTS-030 chr14 94038968 101034378 6995411 * c(LOC100129345, MIR3173, TUNAR, MIR5698, CYP46A1, PAPOLA, SERPINA3, AK7, IFI27L1, SLC25A29, DEGS2, GSC, SERPINA12, PRIMA1, SYNE3, EML1, DICER1, LINC00521, SERPINA11, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, CCDC85C, SERPINA9, IFI27, SERPINA13P, LINC01550, DICER1-AS1, MIR345, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, ASB2, SERPINA1, SERPINA4, ATG2B, C14orf132, DDX24, UNC79, BEGAIN, PPP4R4, BDKRB1, BDKRB2, NA NA NA NA NA NA NA NA NA LTS-030 BCL11B, VRK1, WARS, YY1, OTUB2, WDR25, LINC00341, CLMN, TCL1A, IFI27L2, SETD3, HHIPL1, SERPINA6, CCNK, FAM181A, TCL1B) 0.448057628770261 105 0.0611356400434025 0.938618652161288 5470 0.508793984201782 4 2 2 -6.81160180628413 LTS-030 NA NA NA NA LTS-030 chr14 101034379 101036074 1696 * BEGAIN 0.45240152761757 2 0.037476659402887 0.762714954202616 8 0.152204749315801 2 1 1 -6.81543946036165 LTS-030 chr14 101036075 101301038 264964 * c(MIR2392, LINC00523, MEG3, BEGAIN, DLK1) 0.367 1 NA 0.577896577893404 67 0.300245096622964 2 2 0 -5.76663640770237 LTS-030 chr14 101301039 101459679 158641 * c(MIR665, RTL1, MIR127, MIR136, MIR337, MEG3, MIR433, MIR431, MIR493, MIR432, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, NA NA NA NA NA NA NA NA NA LTS-030 SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR770, MEG8) 0.366518981145577 5 0.0724120155775269 0.633949146213179 332 0.281831788466986 3 2 1 -6.80228117266929 LTS-030 NA NA NA NA LTS-030 chr14 101459680 101488370 28691 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-030 chr14 101488371 103377854 1889484 * c(MIR300, MIR541, MIR543, MIR889, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, ANKRD9, LINC00239, DIO3, DYNC1H1, RCOR1, HSP90AA1, MIR134, MIR154, MIR299, MIR323A, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, CINP, PPP2R5C, ZNF839, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR494, MIR495, MIR496, MOK, MIR487A, MIR539, MIR376A2, MIR487B, NA NA NA NA NA NA NA NA NA LTS-030 MIR411, TRAF3, MIR654, MIR655, MIR656, MIR758, MIR668, WDR20, TECPR2) 0.391335468224233 35 0.0940659789900756 0.820550553133183 2118 0.381830826583483 3 2 1 -6.75993954281808 LTS-030 NA NA NA NA LTS-030 chr14 103377855 103388896 11042 * character(0) NA 0 NA 1.169 1 NA NA NA NA NA LTS-030 chr14 103388897 104139766 750870 * c(LINC00605, CKB, TRMT61A, EIF5, KLC1, MARK3, SNORA28, TNFAIP2, AMN, APOPT1, EXOC3L4, BAG5, CDC42BPB) 0.389535459624152 20 0.0455456971218554 1.05421436302282 1157 0.538022872524181 5 3 2 -6.88788369881248 LTS-030 chr14 104139767 104141949 2183 * KLC1 NA 0 NA 0.755 1 NA NA NA NA NA LTS-030 chr14 104141950 105609483 1467534 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TDRD9, C14orf79, PLD4, ADSSL1, LINC00637, LINC00638, AKT1, PPP1R13B, KIF26A, CEP170B, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, CDCA4, INF2, RD3L, XRCC3, ZFYVE21, C14orf2) 0.378003872664457 50 0.0611612956176752 0.845718353658542 2486 0.446418433433423 3 2 1 -6.75033724139797 LTS-030 chr14 105609484 105965939 356456 * c(CRIP1, CRIP2, PACS2, NUDT14, C14orf80, BRF1, JAG2, TEX22, BTBD6, MTA1) 0.341020635096224 11 0.130093812304813 1.04664673492442 1066 0.590962527663574 6 4 2 -6.79298745578487 LTS-030 chr14 105965940 105995187 29248 * TMEM121 NA 0 NA 0.397 1 NA NA NA NA NA LTS-030 chr14 105995188 106370633 375446 * c(ELK2AP, TMEM121, FAM30A) 0.370804148976371 27 0.0787024219771617 0.784101708974352 392 0.503800364448597 3 2 1 -6.73403937602805 LTS-030 chr14 106370634 106372997 2364 * FAM30A NA 0 NA 0.232 1 NA NA NA NA NA LTS-030 chr14 106372998 107283157 910160 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.365817542589227 39 0.0836042667230865 0.520029716167993 428 0.281311371362518 2 1 1 -7.29107885255343 LTS-030 chr15 20169987 20446043 276057 * character(0) 0.484 1 NA 0.829283683474483 27 0.318379864143036 3 3 0 -5.76661009470043 LTS-030 chr15 20446044 20876534 430491 * c(HERC2P3, NBEAP1, CHEK2P2, GOLGA6L6, GOLGA8CP) 0.345934712774159 21 0.0978189532710692 1.25887987267922 103 0.787771035551954 6 4 2 -6.74455258324749 LTS-030 chr15 20876535 22369619 1493085 * c(POTEB, LINC01193, OR4M2, NF1P2, NBEAP1, LOC646214, CXADRP2, LOC727924) 0.343128176280329 10 0.0623677266968529 0.513842329821924 109 0.215575294923086 2 1 1 -8.30732523211338 LTS-030 chr15 22369620 22382320 12701 * LOC727924 NA 0 NA 1.221 1 NA NA NA NA NA LTS-030 chr15 22382321 22513271 130951 * c(OR4N4, OR4N3P, LOC727924) 0.325979407311553 9 0.0794089275697498 0.854463252070024 76 0.874428703221449 7 5 2 -6.79164791727315 LTS-030 chr15 22513272 22939192 425921 * c(GOLGA8DP, TUBGCP5, CYFIP1, GOLGA6L1, REREP3) 0.495 1 NA 1.04207585806775 188 0.465144480396839 4 4 0 -5.76641582326359 LTS-030 chr15 22939193 23811763 872571 * c(HERC2P7, MIR4508, NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S, MKRN3, NIPA2) 0.396637249529304 16 0.0890160800080525 0.968707116863057 577 0.479332007824898 5 3 2 -6.85145368091372 LTS-030 chr15 23811764 25583683 1771920 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-030 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, SNURF) 0.457682618046661 8 0.0470544896901454 0.743448695238546 729 0.380406026299087 2 1 1 -7.15534442173912 LTS-030 NA NA NA NA LTS-030 chr15 25583684 25583922 239 * UBE3A NA 0 NA 2.938 1 NA NA NA NA NA LTS-030 chr15 25583923 26260562 676640 * c(LOC100128714, MIR4715, ATP10A, UBE3A) 0.437376968203538 11 0.0367599089918747 1.08103925009566 309 0.483119265185864 4 2 2 -6.74428003550476 LTS-030 chr15 26260563 28117091 1856529 * c(LOC100128714, GABRA5, GABRB3, GABRG3, OCA2, LINC00929) 0.467484170401339 11 0.0236888926791363 0.748908180867231 412 0.354355103719147 2 1 1 -7.92606985518665 LTS-030 chr15 28117092 28171233 54142 * OCA2 NA 0 NA 1.035 1 NA NA NA NA NA LTS-030 chr15 28171234 30337572 2166339 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, OCA2, NSMCE3, PDCD6IPP2, TJP1, GOLGA6L7P, HERC2) 0.440674943812997 27 0.125843411041517 1.03156306204329 1166 0.581435895803058 4 2 2 -6.73689724488314 LTS-030 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.123 1 NA NA NA NA NA LTS-030 chr15 30491510 30665383 173874 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.367391741213667 65 0.253002413336012 1 NA NA -5.77496217341738 LTS-030 chr15 30665384 30700100 34717 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 1.004 1 NA NA NA NA NA LTS-030 chr15 30700101 31942063 1241963 * c(LOC100288637, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.43720991622641 23 0.0567265126127244 1.00965091233427 768 0.734832027191696 4 2 2 -6.7335378731347 LTS-030 chr15 31942064 31947326 5263 * OTUD7A NA 0 NA 0.554 1 NA NA NA NA NA LTS-030 chr15 31947327 32620320 672994 * c(CHRNA7, OTUD7A) 0.454 1 NA 0.531295626512306 129 0.298697327384474 2 2 0 -5.82847367469321 LTS-030 chr15 32620321 35085502 2465182 * c(WHAMMP1, MIR1233-2, TMCO5B, LOC100996255, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, GOLGA8B, EMC4, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, GOLGA8O, KATNBL1, ARHGAP11A, SLC12A6) 0.432204755268665 83 0.0551939118985696 0.855426255455974 2304 0.431514602348591 4 2 2 -6.9288736153896 LTS-030 chr15 35085503 40911273 5825771 * c(SRP14-AS1, ANKRD63, MIR3942, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHST14, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, FSIP1, BAHD1, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, MEIS2, EIF2AK4, PLCB2, ZNF770, PAK6, KNL1, C15orf56, PHGR1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, C15orf41, DISP2, DPH6, C15orf57, KNSTRN, BMF, AQR) 0.448381274332215 58 0.0556651279804444 0.978192049530625 3677 0.487560908761975 4 2 2 -6.75849177374538 LTS-030 chr15 40911274 40912849 1576 * KNL1 NA 0 NA 0.463 1 NA NA NA NA NA LTS-030 chr15 40912850 40916528 3679 * KNL1 NA 0 NA 0.423771419952349 74 0.139324429810236 1 NA NA -5.76485037233399 LTS-030 chr15 40916529 41149824 233296 * c(RAD51-AS1, GCHFR, PPP1R14D, RMDN3, DNAJC17, KNL1, RAD51, C15orf62, SPINT1, ZFYVE19) 0.447157020743448 11 0.0526765429941846 1.19924171184644 665 0.523093104692836 6 3 3 -6.76104342387663 LTS-030 chr15 41149825 41164837 15013 * c(RHOV, SPINT1) NA 0 NA 1.06954009930029 25 0.323633656057792 4 NA NA -5.76479878967807 LTS-030 chr15 41164838 41164943 106 * RHOV NA 0 NA 0.466 1 NA NA NA NA NA LTS-030 chr15 41164944 41186990 22047 * c(RHOV, VPS18) 0.156 1 NA 0.664129116968533 45 0.298872761008305 2 2 0 -5.76599740599301 LTS-030 chr15 41186991 42302520 1115530 * c(JMJD7, PLA2G4B, MIR4310, CHP1, OIP5, PLA2G4E, EXD1, MAPKBP1, RTF1, MGA, RPAP1, EHD4, ITPKA, LTK, NDUFAF1, NUSAP1, SPTBN5, DLL4, INO80, VPS18, MIR626, OIP5-AS1, TYRO3, CHAC1, JMJD7-PLA2G4B) 0.16878504361456 48 0.0510843933919837 0.631697059079172 2632 0.279352369697028 2 2 0 -6.760710164658 LTS-030 chr15 42302521 42313342 10822 * PLA2G4E NA 0 NA 0.671207486836591 17 0.188803761334666 2 NA NA -5.76678233868225 LTS-030 chr15 42313343 42342648 29306 * PLA2G4E NA 0 NA 1.442 1 NA NA NA NA NA LTS-030 chr15 42342649 42343183 535 * PLA2G4E 0.5 1 NA 1.29848439503441 11 0.308486333865567 6 6 0 -5.76442964773815 LTS-030 chr15 42343184 42976559 633376 * c(VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, PLA2G4D, HAUS2, STARD9, ZNF106, MIR627, CAPN3, SNAP23) 0.430696825338472 11 0.0600823677054334 1.01722382035159 1349 0.455368677470709 4 2 2 -6.74403044254266 LTS-030 chr15 42976560 42986380 9821 * STARD9 NA 0 NA 0.642714736325531 208 0.142436234893993 2 NA NA -5.76586427611086 LTS-030 chr15 42986381 43852785 866405 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, PPIP5K1, LCMT2) 0.433448707615431 24 0.0429893608341359 0.979129272365414 1909 0.420951763677494 4 2 2 -6.74306829505832 LTS-030 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.071 1 NA NA NA NA NA LTS-030 chr15 43873177 43891782 18606 * c(CKMT1B, STRC, PPIP5K1) 0.214893472336559 2 0.284964032818179 0.318050622466716 47 0.874008325055557 1 1 0 -6.74192330172089 LTS-030 chr15 43891783 43892150 368 * STRC NA 0 NA 0.644 1 NA NA NA NA NA LTS-030 chr15 43892151 44002669 110519 * c(CATSPER2, STRC, CKMT1A) 0.369681938363041 5 0.0681740419808009 0.712849780276452 322 0.559174708925116 3 2 1 -6.73764603993865 LTS-030 chr15 44002670 44002792 123 * character(0) NA 0 NA 0.03 1 NA NA NA NA NA LTS-030 chr15 44002793 44024808 22016 * character(0) NA 0 NA 0.366093983121737 64 0.266012560868246 1 NA NA -5.7657292618 LTS-030 chr15 44024809 45361255 1336447 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, TERB2, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, SORD, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.435144423866221 14 0.0432922600498031 1.01293072516912 1669 0.480525299075933 4 2 2 -6.73751015023438 LTS-030 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.071 1 NA NA NA NA NA LTS-030 chr15 45365581 45367016 1436 * SORD NA 0 NA 0.254498723132862 39 0.14235090929291 0 NA NA -5.76712919500604 LTS-030 chr15 45367017 45384803 17787 * SORD NA 0 NA 1.194 1 NA NA NA NA NA LTS-030 chr15 45384804 45968435 583632 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, DUOXA2, DUOX2, DUOX1, SQRDL, SLC30A4, SPATA5L1, C15orf48, SHF, DUOXA1, SLC28A2) 0.467904555887244 9 0.0396645657706948 0.997366689241443 1175 0.607607262133131 4 2 2 -7.04307827296341 LTS-030 chr15 45968436 47873605 1905170 * c(SQRDL, SEMA6D) 0.337 1 NA 1.02173352481901 37 0.244411485970841 4 4 0 -5.77324312964383 LTS-030 chr15 47873606 48064279 190674 * SEMA6D 0.292248515447996 2 0.0113137084989848 1.05530447313378 142 0.489227890331749 4 3 1 -6.96341230923883 LTS-030 chr15 48064280 48635563 571284 * c(DUT, SLC24A5, CTXN2, MYEF2, SLC12A1, SEMA6D) 0.328594198936256 9 0.033727255710742 1.48886665074566 779 0.713783015350853 7 5 2 -6.87703928563851 LTS-030 chr15 48635564 48700501 64938 * DUT NA 0 NA 0.976 1 NA NA NA NA NA LTS-030 chr15 48700502 50596368 1895867 * c(NDUFAF4P1, MIR4716, SLC27A2, FAM227B, FBN1, FGF7, CEP152, EID1, GABPB1, GALK2, HDC, SHC4, DTWD1, ATP8B4, COPS2, SECISBP2L) 0.314435239200529 16 0.052504563293743 1.24957759807594 1983 0.605002378447863 7 5 2 -6.91999184658912 LTS-030 chr15 50596369 50601876 5508 * GABPB1 NA 0 NA 1.491 1 NA NA NA NA NA LTS-030 chr15 50601877 53042910 2441034 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, MIR4713, MIR4712, GNB5, ARPP19, LEO1, CYP19A1, DMXL2, AP4E1, GABPB1, LYSMD2, SCG3, TMOD3, TMOD2, GLDN, USP50, TNFAIP8L3, MYO5A, TRPM7, FLJ10038, MYO5C, MAPK6, FAM214A, SPPL2A, USP8) 0.337165670620785 50 0.0803918972462844 1.43327691423641 2866 0.811308971779943 6 4 2 -6.76802993932951 LTS-030 chr15 53042911 55908287 2865377 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, WDR72, PYGO1, PRTG, ONECUT1, UNC13C, RSL24D1, RAB27A, MIR628, CCPG1, PIGB) 0.311501763688926 24 0.0582684318042586 1.22881276919613 1164 0.590493246823992 4 3 1 -6.96126653088509 LTS-030 chr15 55908288 55976157 67870 * PRTG NA 0 NA 1.05444389789508 205 0.339635736383822 4 NA NA -5.76540210198397 LTS-030 chr15 55976158 56030364 54207 * PRTG NA 0 NA 0.479 1 NA NA NA NA NA LTS-030 chr15 56030365 56030443 79 * PRTG 0.121 1 NA 0.451283754305381 5 0.314049040756376 1 1 0 -5.76441756472913 LTS-030 chr15 56030444 56258789 228346 * c(PRTG, NEDD4) NA 0 NA 0.475861600769715 253 0.248645366702425 1 NA NA -5.83394100271635 LTS-030 chr15 56258790 56295776 36987 * NEDD4 NA 0 NA 0.278 1 NA NA NA NA NA LTS-030 chr15 56295777 56380305 84529 * RFX7 NA 0 NA 0.244430650735612 57 0.107079523888044 0 NA NA -5.95806509261476 LTS-030 chr15 56380306 56382754 2449 * RFX7 NA 0 NA 0.566 1 NA NA NA NA NA LTS-030 chr15 56382755 57364999 982245 * c(LOC145783, TEX9, ZNF280D, MNS1, RFX7, TCF12) 0.180642486497021 15 0.0934310033177017 0.529714517675431 621 0.295516555597089 2 2 0 -6.84949770448883 LTS-030 chr15 57365000 57383959 18960 * TCF12 NA 0 NA 0.183 1 NA NA NA NA NA LTS-030 chr15 57383960 57730337 346378 * c(LINC00926, TCF12, CGNL1) NA 0 NA 0.201404539076561 104 0.10160730687091 0 NA NA -5.77170390788404 LTS-030 chr15 57730338 69561786 11831449 * c(USP3-AS1, MIR1272, MIR548H4, MIR2116, MIR4311, MIR4312, IQCH-AS1, MIR4511, PDCD7, MYZAP, FEM1B, ADAM10, DENND4A, SNAPC5, CORO2B, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, C15orf61, MGC15885, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, GLCE, FOXB1, EWSAT1, FBXL22, GTF2A2, ANXA2, RBPMS2, ANKDD1A, AQP9, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, MYO1E, OAZ2, RPS27L, RASL12, NA NA NA NA NA NA NA NA NA LTS-030 SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, VPS13C, DPP8, PARP16, TIPIN, CLN6, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, BNIP2, SNX1, HSP90AB4P, SCARNA14, TPM1, CA12, NOX5, ICE2, AAGAB, SLTM, SNX22, ANP32A-IT1, PIF1, PLEKHO2, ANP32A, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, CALML4, SLC24A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 GCNT3, LDHAL6B, TRIP4, IGDCC3, KIAA0101, USP3) 0.164201352480028 169 0.0766434372234701 0.605465283303631 10935 0.841243818136264 2 2 0 -6.73432681638454 LTS-030 NA NA NA NA LTS-030 chr15 69561787 69652451 90665 * c(GLCE, PAQR5) 0.097 1 NA 1.30711493434939 63 0.782506556854789 6 6 0 -5.76483928589041 LTS-030 chr15 69652452 69683945 31494 * PAQR5 0.054 1 NA 1.02713371493807 29 0.420511818686672 4 4 0 -5.76448672409579 LTS-030 chr15 69683946 77401124 7717179 * c(NR2E3, DNM1P35, HCN4, ADPGK-AS1, LOXL1-AS1, MIR4313, MIR4513, SCAMP2, SNUPN, TSPAN3, ARID3B, CLK3, SENP8, HIGD2B, TMEM266, CSK, DRAIC, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, ETFA, SNX33, ARIH1, SIN3A, ULK3, FBXO22, NPTN, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, LOXL1, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, SCAPER, PKM, PML, LRRC49, NA NA NA NA NA NA NA NA NA LTS-030 PAQR5, RPP25, COMMD4, UACA, IMP3, LARP6, GOLGA6B, C15orf39, THAP10, PARP6, FAM219B, ISLR2, PTPN9, BBS4, CPLX3, RCN2, PPCDC, CELF6, RPLP1, STRA6, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR629, MIR630, MIR631, TLE3, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, THSD4, HEXA-AS1, CCDC33, EDC3, CD276, ADPGK, SEMA7A, UBL7, PSTPIP1, UBE2Q2, COX5A, STOML1, KIF23) 0.0758412586511332 127 0.0325468733157222 1.35323798767803 7624 1.95063806136881 6 6 0 -6.75038209579688 LTS-030 NA NA NA NA LTS-030 chr15 77401125 77401143 19 * PEAK1 0.095 1 NA 0.172 1 NA NA NA NA NA LTS-030 chr15 77401144 89392787 11991644 * c(NA, UBE2Q2P2, MIR1276, MIR1179, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MIR5003, HMG20A, CIB2, MTHFS, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, C15orf40, AGBL1, HYKK, WHAMM, FSD2, CRABP1, LINC00052, CTSH, CFAP161, ACAN, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, MRPL46, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LOC338963, IDH3A, TMC3, NA NA NA NA NA NA NA NA NA LTS-030 IL16, IREB2, ISG20, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, MIR184, MIR7-2, GOLGA6L9, DNM1P41, LOC440300, NMB, NTRK3, HDGFRP3, PDE8A, BTBD1, TM6SF1, ZFAND6, SCAND2P, ZSCAN2, DET1, DNAJA4, PSMA4, ADAMTSL3, CEMIP, ALPK3, ABHD17C, RASGRF1, MESDC1, BCL2A1, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, EFTUD1P1, MRPS11, SCARNA15, MIR549A, AGBL1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 ANKRD34C-AS1, EFL1, PEAK1, WDR61, STARD5, AP3B2, LINC00597, FAM103A1, MEX3B, LINGO1, WDR73, LOC91450, SLC28A1, HOMER2, ZNF592, ARNT2) 0.0793175515045457 141 0.0365277815466718 1.17060796485439 8075 0.642962679421868 5 5 0 -6.74819984041003 LTS-030 NA NA NA NA LTS-030 chr15 89392788 89402705 9918 * ACAN 0.0871393934370702 6 0.0440972410323669 0.758103025560682 113 0.30172275370137 5 5 0 -6.75396967435575 LTS-030 chr15 89402706 89403566 861 * ACAN NA 0 NA 1.347 1 NA NA NA NA NA LTS-030 chr15 89403567 96869669 7466103 * c(LINC00930, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, LINC00924, C15orf32, HAPLN3, MESP2, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, SLCO3A1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, LINC01197, MIR9-3, MAN2A2, MFGE8, TTLL13P, LOC440311, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NA NA NA NA NA NA NA NA NA LTS-030 NR2F2-AS1, CRTC3, NR2F2, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.0808597402527359 146 0.0336049853466886 1.25674547780973 5396 0.644076947463119 5 5 0 -6.75663692624498 LTS-030 NA NA NA NA LTS-030 chr15 96869670 96873957 4288 * c(NR2F2-AS1, NR2F2) NA 0 NA 2.28 1 NA NA NA NA NA LTS-030 chr15 96873958 97327083 453126 * c(MIR1469, SPATA8-AS1, SPATA8, NR2F2) 0.078 1 NA 2.14315568733895 134 1.06465297774591 10 10 0 -5.76459563053056 LTS-030 chr15 97327084 97327282 199 * SPATA8 NA 0 NA 0.535 1 NA NA NA NA NA LTS-030 chr15 97327283 98983047 1655765 * c(SPATA8, FAM169B, ARRDC4, LINC00923) 0.0828005308498975 8 0.0667809585778119 0.909367812041629 287 0.409465666882401 4 4 0 -6.82040385206939 LTS-030 chr15 98983048 98984243 1196 * FAM169B NA 0 NA 2.047 1 NA NA NA NA NA LTS-030 chr15 98984244 99544525 560282 * c(MIR4714, PGPEP1L, FAM169B, IGF1R) 0.132 1 NA 1.47364369318114 355 0.629093107902258 6 6 0 -5.76656796417504 LTS-030 chr15 99544526 102202045 2657520 * c(LOC100507472, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, SPATA41, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3) 0.0816118921404104 87 0.033722609347165 1.20059467346464 2270 0.613789862420438 5 5 0 -6.73329477343118 LTS-030 chr15 102202046 102211677 9632 * TARSL2 NA 0 NA 0.538 1 NA NA NA NA NA LTS-030 chr15 102211678 102389423 177746 * c(TARSL2, OR4F6, OR4F15, OR4F13P) 0.0973235752723229 9 0.0693126972494939 0.88428081660198 223 0.460862168978207 4 4 0 -6.7408969311625 LTS-030 chr15 102389424 102516544 127121 * c(FAM138E, OR4F4, WASH3P, OR4F13P) NA 0 NA 0.936378346547771 9 0.322756659282363 4 NA NA -5.76757232466287 LTS-030 chr16 81704 109103 27400 * c(POLR3K, RHBDF1, SNRNP25) 0.214 1 NA 0.8687399261844 99 0.484611822632644 3 3 0 -5.76489442930567 LTS-030 chr16 109104 1034867 925764 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, ARHGDIG, MPG, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, PDIA2, LMF1, FAM173A, CAPN15, MIR662, METRN, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.134864830913349 61 0.0622613827458142 0.809104180952499 3188 0.415568110346287 3 3 0 -6.75300525159994 LTS-030 chr16 1034868 1323767 288900 * c(SSTR5-AS1, TPSD1, TPSG1, SOX8, C1QTNF8, TPSB2, SSTR5, TPSAB1, CACNA1H) 0.202564282730519 10 0.0833187320541492 0.622312019595913 536 0.466648801652328 2 2 0 -6.85360785284712 LTS-030 chr16 1323768 1326602 2835 * character(0) NA 0 NA 0.774 1 NA NA NA NA NA LTS-030 chr16 1326603 2650333 1323731 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, UNKL, NA NA NA NA NA NA NA NA NA LTS-030 LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, UBE2I, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.119863566738799 72 0.0627165528514199 0.857246751038375 4542 0.45593957539715 3 3 0 -6.75377167122664 LTS-030 NA NA NA NA LTS-030 chr16 2650334 2732840 82507 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.116 1 NA 0.368995979084188 158 0.273564003274863 1 1 0 -5.7682462929341 LTS-030 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 1.028 1 NA NA NA NA NA LTS-030 chr16 2747831 3140616 392786 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, ZSCAN10, CLDN6, CLDN9, PKMYT1, IL32) 0.106984376793332 38 0.0451584298197334 0.911312288332387 1268 3.51820798956146 4 4 0 -6.75270390468903 LTS-030 chr16 3140617 3168836 28220 * c(ZNF205, ZNF205-AS1, ZSCAN10) 0.217 1 NA 1.0095803906606 57 0.65531470132252 4 4 0 -5.76441371903958 LTS-030 chr16 3168837 3199803 30967 * c(ZNF205, ZNF213) 0.184266250312437 2 0.0381837661840736 0.834029051324538 107 0.282628872423573 7 6 1 -6.83343214365593 LTS-030 chr16 3199804 3254181 54378 * character(0) NA 0 NA 0.387 1 NA NA NA NA NA LTS-030 chr16 3254182 3544831 290650 * c(MTRNR2L4, ZNF263, ZNF597, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, C16orf90, ZNF75A, ZNF174, ZNF200, NAA60, TIGD7) 0.164342011415035 15 0.0488931780225305 0.556545697574103 727 0.282337969778677 2 2 0 -6.7448399491287 LTS-030 chr16 3544832 3545306 475 * C16orf90 NA 0 NA 0.945 1 NA NA NA NA NA LTS-030 chr16 3545307 14749014 11203708 * c(MIR365A, MIR548X, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, TRAP1, VASN, ADCY9, RMI2, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, CARHSP1, TMEM186, ZNF500, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, BCAR4, CIITA, SMIM22, NUBP1, PARN, PAM16, TXNDC11, NAGPA, BFAR, PMM2, RBFOX1, NA NA NA NA NA NA NA NA NA LTS-030 PPL, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, C16orf90, TFAP4, TNP2, SHISA9, TVP23A, USP7, METTL22, CORO7, ROGDI, ATF7IP2, SNN, NUDT16L1, SLX4, GLYR1, GLIS2, SOCS1, DNAJA3, SNX29, LITAF, SEC14L5) 0.159612896103171 119 0.0655124127815293 0.674964814097769 6417 0.362413470390064 2 2 0 -7.39346016029197 LTS-030 NA NA NA NA LTS-030 chr16 14749015 15120544 371530 * c(PDXDC1, NOMO1, BFAR, NPIPA3, ABCC6P2, PLA2G10, NPIPA1) 0.189842351329634 8 0.0527358647276351 0.455739850455574 202 0.322266843207037 2 2 0 -7.01892243195005 LTS-030 chr16 15120545 16306173 1185629 * c(NPIPA5, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, ABCC6, ABCC1, MYH11, RRN3, NDE1, MIR484, C16orf45, KIAA0430) 0.180539583401119 25 0.0587401622969044 0.675036274225703 1318 0.348065628553161 2 2 0 -6.85776271802432 LTS-030 chr16 16306174 16308154 1981 * ABCC6 NA 0 NA 0.373 1 NA NA NA NA NA LTS-030 chr16 16308155 18804139 2495985 * c(MIR3179-2, ARL6IP1, NOMO2, PKD1P1, ABCC6, NOMO3, RPS15A, XYLT1, ABCC6P1) 0.129 1 NA 0.465912420435808 301 0.289252419165952 1 1 0 -6.17620443219602 LTS-030 chr16 18804140 19896627 1092488 * c(COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, TMC5, TMC7, CCP110) 0.135229678537588 12 0.0538400408617973 0.664147269093776 1419 0.347339404398524 3 3 0 -6.94189643489898 LTS-030 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.381 1 NA NA NA NA NA LTS-030 chr16 20015702 20599432 583731 * c(ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, UMOD) 0.187897314994833 12 0.0501286224414634 0.430625948333965 530 0.234190743430632 2 2 0 -7.47982096899435 LTS-030 chr16 20599433 20601839 2407 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-030 chr16 20601840 27549140 6947301 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, C16orf82, NSMCE1, GGA2, NPIPB3, PDZD9, ANKS4B, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, IL4R, SLC7A5P2, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, TMEM159, LYRM1, USP31, NA NA NA NA NA NA NA NA NA LTS-030 RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.160825787243669 100 0.0958931960594966 0.579429096037234 5523 0.276563699146371 2 2 0 -6.79255464367024 LTS-030 NA NA NA NA LTS-030 chr16 27549141 27549229 89 * GTF3C1 NA 0 NA 0.629 1 NA NA NA NA NA LTS-030 chr16 27549230 28634378 1085149 * c(SGF29, CLN3, GSG1L, XPO6, KIAA0556, IL27, NUPR1, GTF3C1, SBK1, APOBR, SULT1A2, SULT1A1) 0.371441765933625 9 0.117668791293378 0.699309678698528 850 0.323991330598606 3 2 1 -6.84219126647002 LTS-030 chr16 28634379 28634425 47 * SULT1A1 0.068 1 NA 0.205 1 NA NA NA NA NA LTS-030 chr16 28634426 28734890 100465 * SULT1A1 NA 0 NA 0.324721311094783 39 0.398052706076864 1 NA NA -5.78020008938736 LTS-030 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.594 1 NA NA NA NA NA LTS-030 chr16 28834304 31519650 2685347 * c(ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, NA NA NA NA NA NA NA NA NA LTS-030 KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, SULT1A4, ATP2A1, TRIM72, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.17749026181176 31 0.0703196388849034 0.676215301100331 6555 0.328435130783725 2 2 0 -6.96486981469058 LTS-030 NA NA NA NA LTS-030 chr16 31519651 31771024 251374 * c(CLUHP3, ZNF720, YBX3P1, AHSP, C16orf58) 0.213063319608162 6 0.0897500232126247 0.378953375633191 165 0.206046877716464 1 1 0 -6.83201002772565 LTS-030 chr16 31771025 32890081 1119057 * c(ZNF267, ZNF720, SLC6A10P, LOC390705, NA, TP53TG3D) 0.304 1 NA 0.548402886896337 149 0.356199125714033 2 2 0 -5.80504161445782 LTS-030 chr16 32890082 32890602 521 * c(SLC6A10P, LOC390705) NA 0 NA 0.369965050997148 6 0.297871392830306 1 NA NA -5.76442915938081 LTS-030 chr16 32890603 33961385 1070783 * c(SLC6A10P, LOC390705, LINC00273) 0.328406948351474 22 0.0791091087185988 1.16422965644136 202 0.691264425944248 4 3 1 -6.84370382673758 LTS-030 chr16 33961386 33961395 10 * LINC00273 0.366 1 NA 2.932 1 NA NA NA NA NA LTS-030 chr16 33961396 33965537 4142 * LINC00273 0.30783000908554 52 0.0947506292835194 2.86042352550836 81 2.30403038984855 20 14 6 -6.73325072767657 LTS-030 chr16 33965538 33965542 5 * character(0) NA 0 NA 1.182 1 NA NA NA NA NA LTS-030 chr16 33965543 34682251 716709 * c(LINC01566, UBE2MP1) 0.409675758160009 3 0.0642365420405966 0.805563127091729 130 0.488917159983343 3 2 1 -6.91812796426051 LTS-030 chr16 34682252 34682380 129 * character(0) NA 0 NA 0.627255212219698 5 0.160936944173797 2 NA NA -5.76441652455055 LTS-030 chr16 46508169 46642286 134118 * c(ANKRD26P1, SHCBP1) 0.422 1 NA 0.883424935572957 169 0.463988374736559 3 3 0 -5.76814142332764 LTS-030 chr16 46642287 55989972 9347686 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, ADCY7, C16orf78, SNX20, CYLD, CES5A, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.431476465764706 70 0.0894057955240706 0.963507081399646 4804 0.514108463457704 4 2 2 -6.76606216613437 LTS-030 chr16 55989973 56225286 235314 * c(GNAO1, LOC283856) NA 0 NA 1.254 1 NA NA NA NA NA LTS-030 chr16 56225287 56703982 478696 * c(MIR3935, NUDT21, DKFZP434H168, AMFR, GNAO1, MT1DP, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT2A, MT3, OGFOD1, BBS2, MT4) 0.321652720482367 19 0.0653420599256072 1.3405284622186 700 0.671285514050013 7 5 2 -6.76600615779712 LTS-030 chr16 56703983 56704532 550 * MT1H NA 0 NA 0.727 1 NA NA NA NA NA LTS-030 chr16 56704533 58741404 2036872 * c(KATNB1, CETP, CNGB1, CSNK2A2, CPNE2, ADGRG5, PRSS54, ADGRG3, CNOT1, ARL2BP, GOT2, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1H, MT1X, PLLP, POLR2C, SLC38A7, DOK4, COQ9, CIAPIN1, ZNF319, CCL17, CCL22, CX3CL1, MT1IP, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, USB1, SETD6, FAM192A, NLRC5, DRC7, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.447835267597302 69 0.0719385245984245 1.06397620661568 3629 0.536774917985487 4 2 2 -6.75908593099621 LTS-030 chr16 58741405 65087892 6346488 * c(CDH8, CDH11, GOT2, APOOP5) 0.431613408258702 18 0.0654172130612875 0.762257008019752 385 0.356519327979485 3 2 1 -7.24044316072531 LTS-030 chr16 65087893 65155696 67804 * CDH11 NA 0 NA 1.658 1 NA NA NA NA NA LTS-030 chr16 65155697 67316600 2160904 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CDH16, CMTM1, CMTM3, CMTM4, CMTM2, BEAN1, DYNC1LI2, E2F4, CES3, PLEKHG4, LRRC29, TERB1, CES4A, EXOC3L1, LINC00922, TMEM208, FHOD1, HSF4, MIR328, CKLF, FAM96B, FBXL8, PDP2, RRAD, KIAA0895L, SLC9A5, TK2, CA7, ELMO3, C16orf70, B3GNT9, CBFB, TRADD, CES2, NAE1, NOL3) 0.459896784935858 22 0.043247400642555 1.0230100219386 2423 0.425334572969856 4 2 2 -6.87830739188932 LTS-030 chr16 67316601 67339633 23033 * c(KCTD19, PLEKHG4) NA 0 NA 0.999539791723332 157 0.375529633497135 4 NA NA -5.76441015541509 LTS-030 chr16 67339634 67354530 14897 * KCTD19 NA 0 NA 0.64 1 NA NA NA NA NA LTS-030 chr16 67354531 67428421 73891 * c(KCTD19, ZDHHC1, TPPP3, LRRC36) 0.105 1 NA 0.548667101161686 125 0.305600702583215 2 2 0 -5.76803743598024 LTS-030 chr16 67428422 70161298 2732877 * c(CDH3, MIR1538, MIR1972-1, NUTF2, CTCF, NFAT5, WWP2, NRN1L, ZFP90, CARMIL2, TMED6, CTRL, NQO1, AGRP, EDC4, PLA2G15, VPS4A, PDXDC2P, CLEC18C, NOB1, ZDHHC1, HAS3, HSD11B2, CLEC18A, C16orf86, LCAT, MIR140, NFATC3, PARD6A, NIP7, PRMT7, DUS2, CHTF8, PDPR, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, PDF, DPEP2, DPEP3, ACD, SLC12A4, SNTB2, TERF2, FAM65A, TANGO6, ESRP2, CENPT, CYB5B, GFOD2, NA NA NA NA NA NA NA NA NA LTS-030 ENKD1, SLC7A6OS, COG8, UTP4, SLC7A6, ATP6V0D1, CDH1) 0.160688831095598 31 0.0529667170804418 0.640116163249482 4534 0.361080354448803 2 2 0 -6.79251210958562 LTS-030 NA NA NA NA LTS-030 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 0.125 1 NA NA NA NA NA LTS-030 chr16 70162673 70219827 57155 * c(CLEC18C, PDPR) NA 0 NA 0.279651608944012 115 0.126567782270102 0 NA NA -6.01206714313911 LTS-030 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 1.219 1 NA NA NA NA NA LTS-030 chr16 70237374 70608038 370665 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, AARS, FUK, SF3B3, COG4, DDX19A, ST3GAL2, SNORD111) 0.148939855481932 7 0.0520727513059511 0.659239322831211 928 0.29057826789604 2 2 0 -6.81398645204475 LTS-030 chr16 70608039 70608338 300 * SF3B3 NA 0 NA 1.801 1 NA NA NA NA NA LTS-030 chr16 70608339 70889147 280809 * c(VAC14-AS1, IL34, SF3B3, HYDIN, VAC14, MTSS1L) 0.170109439910417 8 0.106765095955025 0.823599018320804 356 0.408868419881106 2 2 0 -6.83508196397529 LTS-030 chr16 70889148 70891778 2631 * HYDIN 0.388 1 NA 0.772314794014342 7 0.187426302976981 3 3 0 -5.76446351023018 LTS-030 chr16 70891779 71212872 321094 * HYDIN 0.328827535792155 84 0.0641053652086704 0.888634385651261 580 0.33155458314227 4 3 1 -6.88142456350876 LTS-030 chr16 71212873 71220702 7830 * HYDIN 0.259 1 NA 0.336454907738208 9 0.15212010970867 1 1 0 -5.77016802691778 LTS-030 chr16 71220703 71220794 92 * HYDIN 0.222 1 NA 0.211453918469413 3 0.0434664621672081 0 0 0 -5.7645427335933 LTS-030 chr16 71220795 72027225 806431 * c(SNORA70D, CHST4, AP1G1, PHLPP2, ATXN1L, PKD1L3, HYDIN, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, MARVELD3, IST1) 0.172881508819877 24 0.0601628074959696 0.590966718990721 1213 0.308612794026727 2 2 0 -6.74412880039897 LTS-030 chr16 72027226 72032099 4874 * PKD1L3 NA 0 NA 0.978 1 NA NA NA NA NA LTS-030 chr16 72032100 72834105 802006 * c(DHODH, HP, HPR, PKD1L3, ZFHX3, TXNL4B, PMFBP1, DHX38) 0.126161814495421 20 0.0499453385423031 1.09384185622405 725 0.536553361480605 3 3 0 -6.89460831953273 LTS-030 chr16 72834106 72845477 11372 * ZFHX3 NA 0 NA 2.884 1 NA NA NA NA NA LTS-030 chr16 72845478 72994148 148671 * ZFHX3 0.0528294470882105 2 0.0148492424049175 2.15315305598504 99 0.677747590123615 8 8 0 -6.75019982123533 LTS-030 chr16 72994149 73126841 132693 * c(HCCAT5, ZFHX3) NA 0 NA 0.658 1 NA NA NA NA NA LTS-030 chr16 73126842 81953333 8826492 * c(LOC100129617, SYCE1L, LINC01568, MIR4720, MIR4719, CLEC3A, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, PLCG2, BCO1, TERF2IP, RFWD3, CENPN, CMC2, PSMD7, VAT1L, FA2H, TMEM231, WDR59, CMIP, GAN, DYNLRB2, ZNRF1, CNTNAP4, BCAR1) 0.115690438511095 106 0.0504220222070688 1.01598556343083 3730 0.571884930612158 4 4 0 -6.8034647369353 LTS-030 chr16 81953334 81954749 1416 * PLCG2 NA 0 NA 0.656 1 NA NA NA NA NA LTS-030 chr16 81954750 83828665 1873916 * c(MIR3182, CDH13, MPHOSPH6, HSD17B2, PLCG2, SDR42E1) 0.137629485485985 18 0.0826071892296203 0.752942293705432 366 0.305104763998772 3 3 0 -6.79322702169728 LTS-030 chr16 83828666 83982712 154047 * c(CDH13, MLYCD, OSGIN1, HSBP1) 0.107794083364458 5 0.0105830052442584 1.14868336242447 83 0.670053007977617 13 12 1 -6.89868402945989 LTS-030 chr16 83982713 83982960 248 * OSGIN1 0.08 1 NA 1.06195400525724 7 0.227086935314377 4 4 0 -5.76442051867007 LTS-030 chr16 83982961 90095582 6112622 * c(VPS9D1-AS1, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, OSGIN1, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, NA NA NA NA NA NA NA NA NA LTS-030 LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.100315062239502 220 0.0553613991549784 1.10730456395059 7098 0.60855476974811 4 4 0 -6.83462744123025 LTS-030 NA NA NA NA LTS-030 chr16 90095583 90109384 13802 * c(URAHP, GAS8, GAS8-AS1) NA 0 NA 1.02200772805755 56 0.356663592453475 4 NA NA -5.76444098223193 LTS-030 chr16 90109385 90161242 51858 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.753069438012045 135 0.470748918510289 3 NA NA -5.76491059827279 LTS-030 chr17 6004 62472 56469 * c(DOC2B, RPH3AL) 0.162 1 NA 0.67666564160638 39 0.307486828657051 2 2 0 -5.76976045617384 LTS-030 chr17 62473 2937789 2875317 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, MIR22HG, SCARF1, NA NA NA NA NA NA NA NA NA LTS-030 RPH3AL, SGSM2) 0.163050892189564 99 0.0649170299630288 0.709867012023401 3556 0.418444881201251 2 2 0 -7.00606206523387 LTS-030 NA NA NA NA LTS-030 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.054 1 NA NA NA NA NA LTS-030 chr17 2965957 3379677 413721 * c(OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.193955414423566 17 0.0735976242423466 0.360553500816547 317 0.211873350931739 1 1 0 -7.095850669347 LTS-030 chr17 3379678 3384912 5235 * c(ASPA, SPATA22) NA 0 NA 0.626 1 NA NA NA NA NA LTS-030 chr17 3384913 4936008 1551096 * c(C17orf107, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ENO3, CAMTA2, ZZEF1, SHPK, ALOX15, RNF167, PELP1, GP1BA, VMO1, TAX1BP3, SMTNL2, ITGAE, GLTPD2, INCA1, MED11, ARRB2, ASPA, ATP2A3, P2RX1, P2RX5, MINK1, ANKFY1, PFN1, PLD2, SLC52A1, NCBP3, PSMB6, CXCL16, UBE2G1, TRPV1, EMC6, GSG2, SLC25A11, ZMYND15, CAMKK1, SPATA22, TM4SF5, SPAG7) 0.167564073381695 73 0.0611555207393002 0.654216435964881 3874 0.28489148991731 2 2 0 -6.82256826726608 LTS-030 chr17 4936009 5317468 381460 * c(LOC100130950, ZFP3, SCIMP, NUP88, SLC52A1, ZNF232, ZNF594, USP6, RABEP1) 0.180214735277369 14 0.059677567711093 0.517721042279675 525 0.227168515524613 2 2 0 -6.86410442435807 LTS-030 chr17 5317469 5319831 2363 * NUP88 NA 0 NA 0.605 1 NA NA NA NA NA LTS-030 chr17 5319832 7762143 2442312 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4520-2, ALOX15P1, CLEC10A, SAT2, GABARAP, CHRNB1, RPL29P2, CYB5D1, CLDN7, DNAH2, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, FGF11, NLRP1, KDM6B, WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12P2, TMEM256, BCL6B, SENP3, SNORA67, SLC13A5, TMEM102, GPS2, LOC339166, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, NA NA NA NA NA NA NA NA NA LTS-030 ASGR1, ASGR2, MIR324, ATP1B2, NUP88, MED31, DERL2, YBX2, POLR2A, FAM64A, XAF1, WRAP53, DHX33, PLSCR3, MIR497, NLGN2, ZBTB4, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, C1QBP, TP53, LOC728392, MIS12, PHF23, PITPNM3, TEKT1, RPAIN, NAA38, NEURL4, TXNDC17, TNK1, TNFSF13, TNFSF12, TMEM88, FXR2, MPDU1, CD68, ACAP1, KIAA0753) 0.166784010262115 94 0.0669621876042634 0.68365039580407 5286 0.318872378833264 2 2 0 -6.97640922513399 LTS-030 NA NA NA NA LTS-030 chr17 7762144 7825731 63588 * c(CHD3, CYB5D1, LOC284023, SCARNA21, KCNAB3) 0.151602834633226 3 0.0648408307575816 1.23384781495627 305 0.671753240525246 9 8 1 -6.75344200117625 LTS-030 chr17 7825732 8157240 331509 * c(MIR4314, NA, MIR4521, CNTROB, ALOX12B, ALOX15B, LINC00324, GUCY2D, PER1, PFAS, BORCS6, TRAPPC1, ALOXE3, VAMP2, CTC1, TMEM107, HES7, KCNAB3, AURKB) 0.155554215669563 32 0.0489778484327025 0.70807500167552 1159 0.344528426585851 2 2 0 -6.80208970724649 LTS-030 chr17 8157241 10235600 2078360 * c(LOC100128288, USP43, KRBA2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DHRS7C, ARHGEF15, PIK3R5, RANGRF, SPDYE4, SLC25A35, MYH10, PFAS, RCVRN, RPL26, RNF222, NDEL1, GAS7, MYH13, GLP2R, NTN1, STX8) 0.194085770992792 38 0.0654030941364195 0.605689357811189 2054 0.285251645285024 2 2 0 -6.85122353914434 LTS-030 chr17 10235601 10236298 698 * MYH13 NA 0 NA 0.251 1 NA NA NA NA NA LTS-030 chr17 10236299 10532025 295727 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.185497562322021 3 0.0702163323830954 0.415918550357432 822 0.177113888597247 1 1 0 -7.18685597989091 LTS-030 chr17 10532026 10532946 921 * MYH3 NA 0 NA 0.93 1 NA NA NA NA NA LTS-030 chr17 10532947 15406489 4873543 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, COX10, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH3, PMP22, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.201688287024011 48 0.0899235466248338 0.546348557107005 2046 0.296540218607681 2 2 0 -7.09835693147331 LTS-030 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.169 1 NA NA NA NA NA LTS-030 chr17 15440243 15644037 203795 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A) 0.183039330621085 17 0.0877865057297264 0.367708130830636 518 0.612012289089703 2 2 0 -6.83483499518836 LTS-030 chr17 15644038 15644443 406 * TBC1D26 NA 0 NA 0.657 1 NA NA NA NA NA LTS-030 chr17 15644444 18315201 2670758 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF287, ZNF624, CDRT15P2, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A) 0.154673427806703 69 0.0681902833877973 0.657535023883318 3844 0.657008544288443 2 2 0 -6.77914647069708 LTS-030 chr17 18315202 18770735 455534 * c(FBXW10, TRIM16L, USP32P2, FOXO3B, TBC1D28, CCDC144B, KRT17P5, TVP23B, PRPSAP2, LGALS9C, KRT16P1, ZNF286B, FAM106A) 0.251747515508301 11 0.114427587264928 0.379328690354324 576 0.275967474432123 1 1 0 -6.7420772859326 LTS-030 chr17 18770736 18775860 5125 * PRPSAP2 NA 0 NA 0.753 1 NA NA NA NA NA LTS-030 chr17 18775861 20254314 1478454 * c(MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, B9D1, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, SNORA59A, RNF112, SPECC1, ULK2) 0.156156113471947 32 0.0702688314215829 0.63007428588277 1751 0.368158197770059 2 2 0 -6.75948207262809 LTS-030 chr17 20254315 20254601 287 * CCDC144CP NA 0 NA 0.428 1 NA NA NA NA NA LTS-030 chr17 20254602 20799498 544897 * c(LOC100287072, CDRT15L2, LGALS9B, CCDC144NL, CCDC144CP, KRT16P3) 0.19876232855728 5 0.13736811857196 0.42697115274857 208 0.245319317644626 1 1 0 -6.83588314021235 LTS-030 chr17 20799499 20799510 12 * character(0) NA 0 NA 0.687 1 NA NA NA NA NA LTS-030 chr17 20799511 20906042 106532 * USP22 0.206 1 NA 0.681437299385209 68 0.264528557984699 2 2 0 -5.77963636694449 LTS-030 chr17 20906043 21194769 288727 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) 0.416 1 NA 0.736559232237389 176 0.27430972327957 3 3 0 -5.77980317967998 LTS-030 chr17 21194770 21431648 236879 * c(C17orf51, KCNJ12, MAP2K3) 0.32377911191272 111 0.084716709594512 0.897172607683505 257 0.412698731016567 4 3 1 -6.7922254231049 LTS-030 chr17 21431649 22066835 635187 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.321015237448615 11 0.14269968465277 0.505560896844748 205 0.292118022668685 1 1 0 -7.12983453321031 LTS-030 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.528 1 NA NA NA NA NA LTS-030 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.158 1 NA 0.669918556639202 19 0.174866699440172 2 2 0 -5.76676922703877 LTS-030 chr17 25630389 27494082 1863694 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, MYO18A, MIR144, TBC1D3P5, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, TIAF1, NA NA NA NA NA NA NA NA NA LTS-030 PIGS, TRAF4, KIAA0100) 0.194566607272476 20 0.088350140737981 0.658812477497561 3488 0.325616177134535 2 2 0 -6.89407054844623 LTS-030 NA NA NA NA LTS-030 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.156 1 NA NA NA NA NA LTS-030 chr17 27528620 27530390 1771 * character(0) NA 0 NA 0.207612032472597 39 0.0878439759036674 0 NA NA -5.76474600118538 LTS-030 chr17 27530391 27530406 16 * character(0) NA 0 NA 0.384 1 NA NA NA NA NA LTS-030 chr17 27530407 30179286 2648880 * c(MIR365B, MIR3184, MIR4523, MIR4724, MIR4733, MIR4725, ABHD15, ANKRD13B, CPD, CRYBA1, LRRC37BP1, EVI2A, EVI2B, TBC1D29, GIT1, EFCAB5, TMIGD1, MIR193A, SUZ12P1, NF1, MIR423, OMG, DPRXP4, CRLF3, COPRS, ADAP2, NUFIP2, TAOK1, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, TP53I13, GOSR1) 0.153303782568375 29 0.0638282601833197 0.618312813927906 2913 0.336991507841534 2 2 0 -6.76754380798952 LTS-030 chr17 30179287 30195227 15941 * c(COPRS, UTP6) NA 0 NA 1.20191607592113 75 0.5882829750543 5 NA NA -5.76441016788273 LTS-030 chr17 30195228 30200349 5122 * UTP6 NA 0 NA 0.733 1 NA NA NA NA NA LTS-030 chr17 30200350 34539517 4339168 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, CCL4L1, LIG3, ASIC2, C17orf102, TBC1D3B, CCL3L3, MYO1D, ARGFXP2, PEX12, NLE1, FNDC8, SLFN12, RHOT1, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, NA NA NA NA NA NA NA NA NA LTS-030 CCL18, CCL23, C17orf75, SH3GL1P1, SNORD7, MIR632, ZNF207, MMP28, TAF15, CDK5R1, ZNF830, SLFN11, RASL10B) 0.187655550673617 64 0.0715259693098548 0.590749493119085 3882 0.385883496861893 2 2 0 -6.79571048505295 LTS-030 NA NA NA NA LTS-030 chr17 34539518 34539722 205 * c(CCL4L1, CCL3L3, CCL3L1) NA 0 NA 0.399 1 NA NA NA NA NA LTS-030 chr17 34539723 34641761 102039 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) 0.174433929677038 2 0.0480832611206852 0.406329831183968 39 0.369360752817618 2 2 0 -6.82265157407721 LTS-030 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.684 1 NA NA NA NA NA LTS-030 chr17 34842415 36486820 1644406 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, LOC440434, GPR179, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, MRPL45, ZNHIT3) 0.162088920213239 23 0.0871982204191621 0.629820948184796 1823 0.740251436111014 2 2 0 -6.73829832246603 LTS-030 chr17 36486821 37700556 1213736 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, GPR179, FBXO47, CDK12, MED1, CWC25, PSMB3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, FBXL20, RPL23) 0.162747523495525 36 0.0523594035762168 0.707299519601524 2223 0.372677433757376 2 2 0 -6.87614680898362 LTS-030 chr17 37700557 37759983 59427 * character(0) NA 0 NA 1.511 1 NA NA NA NA NA LTS-030 chr17 37759984 37868308 108325 * c(STARD3, ERBB2, NEUROD2, PNMT, PPP1R1B, TCAP, PGAP3) 0.0824503852528962 7 0.0214320632075713 1.29795618821725 390 0.554692362901226 5 5 0 -6.73433561927335 LTS-030 chr17 37868309 38802072 933764 * c(LRRC3C, MIR4728, SNORD124, CCR7, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, GSDMA, GRB7, MSL1, IGFBP4, RAPGEFL1, GSDMB, PSMD3, RARA, SMARCE1, THRA, TOP2A, MIEN1, TNS4, ORMDL3, NR1D1, MED24, CDC6) 0.15037038184769 18 0.0829090374852587 0.726066855351058 2343 0.372515828260911 3 3 0 -6.83199755552961 LTS-030 chr17 38802073 38810904 8832 * SMARCE1 NA 0 NA 0.21 1 NA NA NA NA NA LTS-030 chr17 38810905 39346769 535865 * c(KRTAP4-9, KRTAP4-7, KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT39, KRT20, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP4-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4) 0.160646688410706 54 0.0838734050713749 0.52113185065289 1206 0.251268104951214 2 2 0 -6.8313785626687 LTS-030 chr17 39346770 39346843 74 * KRTAP9-1 NA 0 NA 0.333 1 NA NA NA NA NA LTS-030 chr17 39346844 39431928 85085 * c(KRTAP9-6, KRTAP9-1, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-4) 0.249504923944029 10 0.0660760504603933 0.298521063292188 73 0.167523006666419 1 1 0 -6.88061835740229 LTS-030 chr17 39431929 39432216 288 * KRTAP9-7 NA 0 NA 0.824 1 NA NA NA NA NA LTS-030 chr17 39432217 39597162 164946 * c(KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP29-1, KRT31, KRT33A, KRT33B, KRT34, KRTAP17-1, KRT38, KRT37) 0.147490515390936 9 0.0505494807094989 0.557555009364863 352 0.256184450747841 2 2 0 -6.81203015208814 LTS-030 chr17 39597163 39616080 18918 * c(KRT32, KRT38) NA 0 NA 1.035 1 NA NA NA NA NA LTS-030 chr17 39616081 41243074 1626994 * c(RAMP2-AS1, MIR5010, PTGES3L, PTGES3L-AARSD1, PSME3, EIF1, RAMP2, VAT1, P3H4, NT5C3B, CNTD1, CNP, RUNDC1, LINC00974, FAM134C, ZNF385C, EZH1, KCNH4, GAST, G6PC, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, AOC2, KLHL10, HSD17B1, IFI35, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT32, LINC00671, KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, RPL27, WNK4, BRCA1, NA NA NA NA NA NA NA NA NA LTS-030 STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, AARSD1, RND2, TTC25, VPS25, GHDC, CNTNAP1, AOC3, BECN1, KRT36, HAP1, AOC4P, HSPB9) 0.148743211636087 73 0.0551400665636093 0.715740252603161 4307 0.348162329647902 3 3 0 -6.95190329259901 LTS-030 NA NA NA NA LTS-030 chr17 41243075 41243354 280 * BRCA1 NA 0 NA 0.253 1 NA NA NA NA NA LTS-030 chr17 41243355 41246863 3509 * BRCA1 0.186927544075944 6 0.0377994708957678 0.354095140000969 77 0.108998504382498 2 2 0 -6.97653124005777 LTS-030 chr17 41246864 41247799 936 * BRCA1 NA 0 NA 0.712 1 NA NA NA NA NA LTS-030 chr17 41247800 43585920 2338121 * c(LINC00910, MAP3K14-AS1, HDAC5, MIR2117, GJC1, LINC00854, NBR2, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, ARL4D, CCDC103, NBR1, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, BRCA1, UBTF, FMNL1, C17orf53, TMUB2, NA NA NA NA NA NA NA NA NA LTS-030 ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.198960726684981 49 0.0930087818617219 0.700942012894267 3957 0.442492320995625 2 2 0 -6.98452029136043 LTS-030 NA NA NA NA LTS-030 chr17 43585921 43679170 93250 * character(0) NA 0 NA 0.326 1 NA NA NA NA NA LTS-030 chr17 43679171 45209744 1530574 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.170155563798756 4 0.0857957846672356 0.573839303148227 813 0.331499144995084 2 2 0 -6.75029046264043 LTS-030 chr17 45209745 45214415 4671 * CDC27 NA 0 NA 1.129 1 NA NA NA NA NA LTS-030 chr17 45214416 45216210 1795 * CDC27 0.201914182481097 9 0.0331188935671334 1.58110406865566 22 0.890730314689297 16 13 3 -6.74144221201484 LTS-030 chr17 45216211 45216216 6 * CDC27 0.287 1 NA 0.742 1 NA NA NA NA NA LTS-030 chr17 45216217 45234713 18497 * CDC27 0.397528815995762 11 0.089048403589386 1.27203372005968 54 0.725063205996847 10 6 4 -6.74333347260553 LTS-030 chr17 45234714 45249365 14652 * CDC27 0.192 1 NA 0.658029566402701 19 0.492117794818078 2 2 0 -5.76473301983942 LTS-030 chr17 45249366 45351987 102622 * c(ITGB3, MYL4, CDC27) 0.18998514969757 2 0.103944696834422 1.27644522104956 85 0.577115252654042 7 6 1 -6.74305972272883 LTS-030 chr17 45351988 45360661 8674 * ITGB3 NA 0 NA 0.592 1 NA NA NA NA NA LTS-030 chr17 45360662 46214736 854075 * c(CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, ITGB3, KPNB1, MIR152, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1) 0.164454258247943 23 0.0816402500901523 0.671478802120432 1377 0.31800126986545 2 2 0 -6.79882713749491 LTS-030 chr17 46214737 46507497 292761 * c(MIR1203, SKAP1) NA 0 NA 0.612730323379043 56 0.211922431288235 2 NA NA -5.76647722997136 LTS-030 chr17 46507498 46623384 115887 * c(HOXB-AS1, HOXB1, HOXB2, SKAP1) 0.101 1 NA 1.73846916985641 93 0.628092413165762 8 8 0 -5.76463996632574 LTS-030 chr17 46623385 46653196 29812 * c(HOXB-AS1, HOXB3, HOXB4) 0.133 1 NA 1.5205975884489 131 0.870245305148666 7 7 0 -5.7644740521334 LTS-030 chr17 46653197 49371458 2718262 * c(MIR3185, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CHAD, KAT7, NXPH3, SNF8, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, HILS1, TOB1-AS1, HOXB-AS3, MIR10A, MIR196A1, NGFR, NME1, NME2, UTP18, ABI3, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, MBTD1, NA NA NA NA NA NA NA NA NA LTS-030 LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, UBE2Z, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PRAC1, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.0942461149467483 90 0.0305590053664834 1.10892043370315 5405 0.578323029061569 4 4 0 -6.79816363218478 LTS-030 NA NA NA NA LTS-030 chr17 49371459 56283885 6912427 * c(TOM1L1, MIR3614, C17orf112, OR4D2, MSI2, COX11, DYNLL2, ANKFN1, MMD, MTVR2, STXBP4, OR4D1, HLF, C17orf67, RNF126P1, CUEDC1, UTP18, MRPS23, MKS1, TMEM100, MSX2P1, CA10, PCTP, SCPEP1, SRSF1, TRIM25, VEZF1, COIL, AKAP1, EPX, KIF2B, DGKE, NOG) 0.0977672278065126 26 0.0670242780353048 0.868289238243337 1518 0.453866432891799 3 3 0 -6.95551003025625 LTS-030 chr17 56283886 58176778 1892893 * c(TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, CLTC, HSF5, PPM1E, C17orf47, GDPD1, SKA2, YPEL2, LPO, MIR142, MIR21, MIR301A, MPO, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, RNF43, MKS1, SMG8, PRR11, TEX14, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, SUPT4H1, MIR454, DHX40, VMP1, MTMR4, TSPOAP1) 0.0937977949513743 27 0.0528010295159926 1.01802206755547 2360 0.539481228956004 4 4 0 -6.73971498845927 LTS-030 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.379 1 NA NA NA NA NA LTS-030 chr17 58177075 58179422 2348 * LOC653653 0.101662835815241 2 0.067175144212722 0.453451634808848 53 0.173950644035118 4 4 0 -6.76306620241671 LTS-030 chr17 58179423 58179474 52 * LOC653653 NA 0 NA 0.781 1 NA NA NA NA NA LTS-030 chr17 58179475 60743509 2564035 * c(APPBP2, TLK2, C17orf64, EFCAB3, METTL2A, NACA2, C17orf82, TBC1D3P2, BCAS3, INTS2, LOC653653, SCARNA20, TBX2, CA4, BRIP1, USP32, PPM1D, TBX4, MRC2, MED13) 0.0944318256947189 26 0.0340249908155755 0.980176175068972 1494 0.479678201616285 4 4 0 -6.74570862481397 LTS-030 chr17 60743510 60779143 35634 * c(MARCH10, MRC2) 0.0829942958890645 11 0.0263752638935527 1.59913255300145 166 0.811739752761898 5 5 0 -6.7360857899178 LTS-030 chr17 60779144 60782800 3657 * MARCH10 NA 0 NA 1.071 1 NA NA NA NA NA LTS-030 chr17 60782801 71248814 10466014 * c(SNORA38B, LINC00674, LINC00673, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, SLC39A11, AMZ2P1, ERN1, BPTF, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, KCNJ2-AS1, LINC00511, MAP3K3, PLEKHM1P1, NA NA NA NA NA NA NA NA NA LTS-030 LOC440461, TACO1, AMZ2, PECAM1, FAM20A, C17orf80, WIPI1, PRKAR1A, PRKCA, TEX2, MAP2K6, CCDC47, PSMC5, PSMD12, SCN4A, CPSF4L, SMURF2, SMARCD2, SOX9, SSTR2, SNORA50C, SNORD104, MIR634, MIR635, LOC729683, CACNG1, LIMD2, KCNH6, AXIN2, FAM104A, RGS9, CEP95, SLC16A6, STRADA, PRR29, COG1, CD79B, HELZ) 0.0970376811203095 98 0.0433345877186045 1.02049840456825 5701 0.465918309454207 4 4 0 -6.74594044038468 LTS-030 NA NA NA NA LTS-030 chr17 71248815 71248820 6 * CPSF4L NA 0 NA 1.165 1 NA NA NA NA NA LTS-030 chr17 71248821 71418605 169785 * c(CDC42EP4, SDK2, CPSF4L) 0.0867164271974032 18 0.0300063718723403 1.3564487407785 328 0.686425098367661 5 5 0 -6.74909726088843 LTS-030 chr17 71418606 71418610 5 * SDK2 NA 0 NA 0.677 1 NA NA NA NA NA LTS-030 chr17 71418611 72948124 1529514 * c(CD300LD, MIR3615, CD300C, CD300A, USH1G, CD300LB, KIF19, CD300LF, C17orf77, FDXR, NAT9, LINC00469, FADS6, HID1, GRIN2C, RAB37, CD300E, OTOP3, GPR142, BTBD17, LOC400620, SDK2, TMEM104, GPRC5C, RPL38, DNAI2, MGC16275, OTOP2, SLC9A3R1, TTYH2) 0.12072094288109 33 0.0966228120219563 0.95707602579905 1755 0.496207349757299 4 4 0 -6.77084164454237 LTS-030 chr17 72948125 73569367 621243 * c(LOC100287042, MIR3678, ATP5H, GGA3, KCTD2, HID1, TSEN54, GRB2, NT5C, CDR2L, MRPL58, LLGL2, MRPS7, HN1, MIF4GD, CASKIN2, SLC25A19, SUMO2, ARMC7, NUP85, SLC16A5, TMEM94) 0.0797267831257112 21 0.0206346910854143 1.33718779834304 1247 0.664165360720024 5 5 0 -6.75229020307417 LTS-030 chr17 73569368 73569507 140 * LLGL2 NA 0 NA 0.638 1 NA NA NA NA NA LTS-030 chr17 73569508 79507579 5938072 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, BAIAP2, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, MGAT5B, TEPSIN, RBFOX3, TMC8, AANAT, TRIM65, UNC13D, EVPL, CEP131, FOXJ1, JMJD6, EXOC7, WBP2, NA NA NA NA NA NA NA NA NA LTS-030 GAA, FSCN2, GALK1, UBALD2, TMEM235, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, SAP30BP, H3F3B, BIRC5, ENPP7, ZACN, ITGB4, AATK-AS1, LGALS3BP, LLGL2, FLJ45079, MXRA7, BAIAP2-AS1, MIR338, NPTX1, ACOX1, CCDC40, ST6GALNAC1, PRPSAP1, CBX8, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, UBE2O, SEC14L1, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 MIR657, PRCD, CARD14, MFSD11, CHMP6, RHBDF2, MYO15B, FAAP100, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SYNGR2, CYTH1, RECQL5, PGS1, AATK, EIF4A3) 0.0966398475973781 187 0.0352739388485087 1.15890578710867 8826 0.585740148657502 5 5 0 -6.84325303482384 LTS-030 NA NA NA NA LTS-030 chr17 79507580 81050982 1543403 * c(ALYREF, RAB40B, PPP1R27, CSNK1D, B3GNTL1, SLC25A10, NOTUM, CENPX, LRRC45, FASN, MYADML2, NPB, GCGR, NARF, UTS2R, CCDC57, HEXDC, METRNL, GPS1, OXLD1, CCDC137, ARL16, MCRIP1, FOXK2, ARHGDIA, TEX19, MAFG, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, WDR45B, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, FN3K, TBCD, ASPSCR1, C17orf62, FN3KRP, OGFOD3, ZNF750, FAAP100, TSPAN10, SLC16A3, HGS, CD7, NA NA NA NA NA NA NA NA NA LTS-030 MAFG-AS1) 0.0632321844643052 33 0.0222936667185453 1.69550442415936 3226 0.861219764453785 7 7 0 -6.7398595052577 LTS-030 NA NA NA NA LTS-030 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.52591499592812 15 0.490737171435557 7 NA NA -5.76460167670468 LTS-030 chr18 116845 122129 5285 * ROCK1P1 NA 0 NA 0.395661615246412 63 0.278600402605232 1 NA NA -5.76441180983852 LTS-030 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.761 1 NA NA NA NA NA LTS-030 chr18 122232 204780 82549 * USP14 0.491 1 NA 1.34439642656062 63 0.468722937911429 6 6 0 -5.76479616675789 LTS-030 chr18 204781 751858 547078 * c(CETN1, CLUL1, TYMSOS, ENOSF1, TYMS, YES1, COLEC12, USP14, THOC1) 0.368352052756202 7 0.123095781522242 1.12407094527313 512 0.485470013162637 6 4 2 -6.80564458675962 LTS-030 chr18 751859 756487 4629 * YES1 NA 0 NA 0.885 1 NA NA NA NA NA LTS-030 chr18 756488 14866503 14110016 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, ADCYAP1, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, NA NA NA NA NA NA NA NA NA LTS-030 LINC00470, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, YES1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.424740956337115 142 0.0843662291637736 0.950271703144382 6188 0.510413843881892 4 2 2 -6.83264624183753 LTS-030 NA NA NA NA LTS-030 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.42320339617718 33 0.796552797903871 6 NA NA -5.76444221069833 LTS-030 chr18 18529727 18529837 111 * ROCK1 0.458 1 NA 0.490370332788596 3 0.165175664067077 2 2 0 -5.76450667496238 LTS-030 chr18 18529838 18535138 5301 * ROCK1 0.338 2 0.0197989898732233 0.474771599156398 56 0.207777937781111 12 8 4 -7.02748480355939 LTS-030 chr18 18535139 23738290 5203152 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.444956371871522 44 0.0535970992557041 1.00109983306925 2806 0.525722964932422 4 2 2 -6.74136714027377 LTS-030 chr18 23738291 23748041 9751 * PSMA8 NA 0 NA 0.054 1 NA NA NA NA NA LTS-030 chr18 23748042 23750603 2562 * PSMA8 NA 0 NA 0.36745941422506 45 0.312808704895797 1 NA NA -5.76451151958493 LTS-030 chr18 23750604 23758789 8186 * PSMA8 NA 0 NA 0.886 1 NA NA NA NA NA LTS-030 chr18 23758790 30275546 6516757 * c(CDH2, MIR302F, DSG2-AS1, PSMA8, SLC25A52, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, TRAPPC8, KCTD1, AQP4, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TAF4B, TTR, PCAT18, CHST9, B4GALT6) 0.458380446608953 18 0.0308106169631031 0.925093725546969 2176 0.422861393017049 4 2 2 -7.0994767992784 LTS-030 chr18 30275547 30314113 38567 * KLHL14 NA 0 NA 1.85 1 NA NA NA NA NA LTS-030 chr18 30314114 30977218 663105 * c(CCDC178, KLHL14) 0.453682454532741 5 0.0373336309511947 1.46584512990388 189 0.73346568691415 6 3 3 -6.83040338134661 LTS-030 chr18 30977219 30991861 14643 * CCDC178 NA 0 NA 1.13 1 NA NA NA NA NA LTS-030 chr18 30991862 33706781 2714920 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, CCDC178, MIR187, RPRD1A, ZNF24, ASXL3, C18orf21, ZNF397, NOL4) 0.395402566622652 10 0.0813006081704737 0.968010049638332 1412 0.437791765897926 4 2 2 -6.90706872070349 LTS-030 chr18 33706782 34378445 671664 * c(SLC39A6, TPGS2, MOCOS, ELP2, FHOD3) 0.364323145746512 16 0.0559112391802101 1.35414404131059 554 0.549919863208682 6 4 2 -6.74686036486992 LTS-030 chr18 34378446 34846473 468028 * c(TPGS2, CELF4, KIAA1328) 0 1 NA 1.2621051126905 115 0.637663502671438 5 5 0 -5.76613347031853 LTS-030 chr18 34846474 35237121 390648 * c(MIR4318, CELF4) 0.254158362849798 2 0.338704148188356 1.33295572817827 56 0.764816042732355 5 4 1 -6.73752752637626 LTS-030 chr18 35237122 35237154 33 * MIR4318 NA 0 NA 0.69 1 NA NA NA NA NA LTS-030 chr18 35237155 50278477 15041323 * c(SNORD58C, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR4743, MIR4744, MIR5583-2, MIR5583-1, ACAA2, HAUS1, LOXHD1, C18orf25, TCEB3C, DCC, ZBTB7C, SKA1, CFAP53, SETBP1, SNORD58B, SNORD58A, LINC00907, SIGLEC15, ST8SIA5, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, MEX3C, PIK3C3, DYM, ELAC1, MAPK4, EPG5, RIT2, RPL17, KC6, MIR924HG, NA NA NA NA NA NA NA NA NA LTS-030 SKOR2, SLC14A1, SCARNA17, SYT4, SLC14A2, KATNAL2, MRO, HDHD2, PSTPIP2, PIAS2, LIPG, CTIF) 0.171213047339105 92 0.0709518546007448 0.615587831031377 4394 0.346495636467112 2 2 0 -6.79450086954076 LTS-030 NA NA NA NA LTS-030 chr18 50278478 53070921 2792444 * c(POLI, STARD6, C18orf54, DCC, DYNAP, RAB27B, SNORA37, TCF4, CCDC68, MBD2) 0.208807690271768 9 0.0974807673338695 0.49333481509132 942 0.245968825772321 2 2 0 -7.7442313988649 LTS-030 chr18 53070922 53128215 57294 * TCF4 NA 0 NA 1.053 1 NA NA NA NA NA LTS-030 chr18 53128216 53727493 599278 * c(MIR4529, TCF4) 0.108 1 NA 1.15129613333584 71 0.524785203161008 5 5 0 -5.76670491890674 LTS-030 chr18 53727494 61261714 7534221 * c(LINC01539, LOC100505549, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TNFRSF11A, SERPINB12, SEC11C, TXNL1, ONECUT2, VPS4B) 0.180892824380127 79 0.0722469012171145 0.574987724816103 3841 0.426416878666196 2 2 0 -6.80250768073064 LTS-030 chr18 61261715 61262274 560 * SERPINB13 NA 0 NA 0.313 1 NA NA NA NA NA LTS-030 chr18 61262275 61328570 66296 * c(SERPINB13, SERPINB3, SERPINB4) NA 0 NA 0.288813972610206 167 0.194872601790258 1 NA NA -5.87056087764747 LTS-030 chr18 61328571 61377371 48801 * c(SERPINB3, SERPINB11) NA 0 NA 0.457 1 NA NA NA NA NA LTS-030 chr18 61377372 71807489 10430118 * c(CDH7, LINC01541, LOC100505817, MIR5011, CD226, CBLN2, FBXO15, DOK6, LINC00305, RTTN, HMSD, LOC284294, CDH19, LINC01538, LOC400655, SERPINB2, SERPINB8, SERPINB10, TMX3, LOC643542, CCDC102B, NETO1, SERPINB7, SERPINB11, DSEL, SOCS6) 0.21444483362985 21 0.0670243026286521 0.496260402661702 1720 0.23334190125335 2 2 0 -9.60806813020716 LTS-030 chr18 71807490 71807495 6 * FBXO15 NA 0 NA 0.736 1 NA NA NA NA NA LTS-030 chr18 71807496 74639505 2832010 * c(LOC100131655, TSHZ1, FAM69C, CYB5A, FBXO15, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, LINC00909, C18orf65, ZNF407, CNDP2, C18orf63, ZNF236, CNDP1, ZNF516) 0.14497714800478 24 0.0522244147191103 0.612671236708856 1232 0.332709903469724 2 2 0 -6.8281954488008 LTS-030 chr18 74639506 74639870 365 * ZNF236 NA 0 NA 1.096 1 NA NA NA NA NA LTS-030 chr18 74639871 74727042 87172 * c(MBP, ZNF236) 0.116874082380381 9 0.0426819634037611 0.96491435978812 198 0.526470410044489 3 3 0 -6.75465542647029 LTS-030 chr18 74727043 74727045 3 * MBP NA 0 NA 0.632 1 NA NA NA NA NA LTS-030 chr18 74727046 77809381 3082336 * c(RBFADN, TXNL4A, GALR1, KCNG2, SALL3, ATP9B, MBP, HSBP1L1, NFATC1, RBFA, PQLC1, CTDP1) 0.168011186896296 28 0.0419194238419148 0.643549534215026 840 0.302030326926889 2 2 0 -6.83956469219611 LTS-030 chr18 77809382 78005362 195981 * c(PARD6G-AS1, RBFADN, ADNP2, RBFA, PARD6G) NA 0 NA 0.608251054828715 247 0.274121049041596 2 NA NA -5.76479367901867 LTS-030 chr19 107416 291377 183962 * c(LINC01002, OR4F17, PLPP2) NA 0 NA 0.460516733382309 39 0.339942316691322 1 NA NA -5.78453130189598 LTS-030 chr19 291378 306635 15258 * c(MIER2, PLPP2) NA 0 NA 0.801 1 NA NA NA NA NA LTS-030 chr19 306636 327998 21363 * MIER2 0.264 1 NA 0.738250651920474 49 0.304319913403441 3 3 0 -5.7652864730497 LTS-030 chr19 327999 8807932 8479934 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-030 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, ACTL9, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, ANGPTL4, MARCH2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 CD320, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, ADAMTS10, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 TPGS1, RAB11B, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.163339486784319 365 0.0652987971314879 0.719690245521179 15090 0.63221086599155 3 3 0 -7.08446534563017 LTS-030 NA NA NA NA LTS-030 chr19 8807933 10200810 1392878 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, ZNF846, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, C3P1, OR7G2, OR7G3, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, MBD3L1, ZNF561, OLFM2, MUC16) 0.212162619128213 97 0.0827699478142181 0.507076313835367 2646 0.288307236532069 2 2 0 -7.18741422127191 LTS-030 chr19 10200811 10201916 1106 * C19orf66 NA 0 NA 1.424 1 NA NA NA NA NA LTS-030 chr19 10201917 11242667 1040751 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, RAVER1, ILF3-AS1, DNM2, DNMT1, C19orf38, ICAM1, ICAM3, ICAM4, ILF3, LDLR, MIR199A1, P2RY11, MRPL4, PDE4A, S1PR5, C19orf66, PPAN, SLC44A2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, KEAP1) 0.143109177697852 78 0.0608449933857603 0.728279869477487 2566 0.422594820744893 3 3 0 -6.82416996061173 LTS-030 chr19 11242668 11257988 15321 * c(SPC24, LDLR) 0.0773644376922396 3 0.0427823951332009 2.17802182173298 40 1.58603829617165 18 17 1 -6.73470628481403 LTS-030 chr19 11257989 11258468 480 * SPC24 NA 0 NA 0.518 1 NA NA NA NA NA LTS-030 chr19 11258469 11665217 406749 * c(CCDC151, ZNF653, SWSAP1, CCDC159, CNN1, SPC24, ELAVL3, EPOR, KANK2, TSPAN16, TMEM205, ECSIT, PRKCSH, ANGPTL8, RGL3, DOCK6, PLPPR2, ELOF1, RAB3D) 0.147846007736983 10 0.0363668041549494 0.739208865511233 1061 0.307925355203408 2 2 0 -6.97608500970728 LTS-030 chr19 11665218 11685840 20623 * c(ACP5, ELOF1) NA 0 NA 0.471 1 NA NA NA NA NA LTS-030 chr19 11685841 12740253 1054413 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.132008720106858 21 0.068448242525005 0.50823670223852 1727 0.517999852846584 2 2 0 -6.93220987247602 LTS-030 chr19 12740254 14693932 1953679 * c(LOC100507373, DDX39A, RNASEH2A, KLF1, GIPC1, NACC1, MISP3, RLN3, ZNF791, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, SYCE2, GCDH, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, NA NA NA NA NA NA NA NA NA LTS-030 PODNL1, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.164167956528664 42 0.0624701182922084 0.714505736223119 3480 0.370937215998064 2 2 0 -6.98788820997333 LTS-030 NA NA NA NA LTS-030 chr19 14693933 15226088 532156 * c(ILVBL, OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.220599383397033 15 0.0647079887612326 0.499789400324277 723 0.239374756870337 1 1 0 -7.11451590187949 LTS-030 chr19 15226089 15582868 356780 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3) 0.14131619690501 7 0.0645238973817712 0.738035778112659 864 0.382489800841385 3 3 0 -6.78714350073518 LTS-030 chr19 15582869 15586305 3437 * PGLYRP2 NA 0 NA 0.51 1 NA NA NA NA NA LTS-030 chr19 15586306 16146800 560495 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.183697636655565 29 0.0783641241933522 0.495853092753621 579 0.251471215604691 2 2 0 -6.95044266144407 LTS-030 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 1.912 1 NA NA NA NA NA LTS-030 chr19 16178447 19824850 3646404 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, KLF2, IFI30, CHERP, CERS1, COPE, CCDC124, NXNL1, CIB3, CALR3, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, CILP2, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, GDF1, SNORA68, ARRDC2, CPAMD8, NWD1, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, HAPLN4, BORCS8-MEF2B, RAB8A, MYO9B, NA NA NA NA NA NA NA NA NA LTS-030 NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ATP13A1, ANO8, SUGP1, EPS15L1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, TPM4, LOC729966, BORCS8, UBA52, ZNF14, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, PBX4, KIAA1683, ELL, PLVAP, USHBP1, TSSK6, C19orf44, GTPBP3, MPV17L2, HSH2D, RFXANK, AP1M1, F2RL3, LPAR2, CRLF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 HAUS8, MVB12A, ARMC6, ZNF101, MED26, HOMER3, GDF15) 0.162706208101542 135 0.0559277469602006 0.703829019435196 7247 0.336067440250187 2 2 0 -7.2015662288141 LTS-030 NA NA NA NA LTS-030 chr19 19824851 20135278 310428 * c(LINC00663, ZNF506, ZNF253, ZNF14, ZNF93, ZNF682) NA 0 NA 0.6232101910526 163 0.289924941773652 2 NA NA -5.76794493574186 LTS-030 chr19 20135279 20150098 14820 * ZNF682 NA 0 NA 2.039 1 NA NA NA NA NA LTS-030 chr19 20150099 20229486 79388 * c(ZNF90, ZNF682) 0.452 1 NA 1.0578892117682 27 0.403016376131541 4 4 0 -5.76533873428767 LTS-030 chr19 20229487 23675093 3445607 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF626, ZNF493, ZNF429, ZNF728, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF826P, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, ZNF486) 0.438039969105348 22 0.0738389056167816 0.996962361376022 1014 0.591911381218525 4 2 2 -6.73312384347064 LTS-030 chr19 23675094 24345121 670028 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.07808481604142 289 0.759716391748265 4 NA NA -5.76834501371473 LTS-030 chr19 28247625 30021023 1773399 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.486 1 NA 0.957720468047666 47 0.331058096804412 4 4 0 -5.78247334569744 LTS-030 chr19 30021024 34981453 4960430 * c(THEG5, UBA2, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, DPY19L3, ZNF507, LSM14A, GPI, VSTM2B, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, PDCD5, FAAP24, TDRD12, NA, KIAA0355, ZNF536) 0.429231806002152 79 0.0647049403729423 1.03691465648962 2346 0.53158185892303 4 2 2 -6.75949383127796 LTS-030 chr19 34981454 34983815 2362 * WTIP NA 0 NA 0.394 1 NA NA NA NA NA LTS-030 chr19 34983816 35260479 276664 * c(SCGB2B3P, WTIP, ZNF599, SCGB2B2, ZNF181, ZNF302, SCGB1B2P) 0.395230243183387 5 0.088496892600814 0.73701581556493 242 0.320112835273782 3 2 1 -6.77982901828338 LTS-030 chr19 35260480 35263583 3104 * ZNF599 NA 0 NA 1.747 1 NA NA NA NA NA LTS-030 chr19 35263584 35802938 539355 * c(HPN-AS1, LINC00904, ZNF792, ZNF599, FAM187B, LGI4, HPN, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, HAMP, SCN1B, USF2, ZNF30) 0.458751519455092 17 0.02878035481938 1.1204843540477 862 0.485232154697411 4 2 2 -7.03033604853535 LTS-030 chr19 35802939 35803095 157 * MAG NA 0 NA 0.542 1 NA NA NA NA NA LTS-030 chr19 35803096 35851141 48046 * c(MIR5196, FFAR1, FFAR3, MAG, CD22) 0.463353986254495 4 0.030510927004381 0.811141375385726 153 0.349413088180667 4 2 2 -7.11327469973263 LTS-030 chr19 35851142 35863609 12468 * FFAR3 NA 0 NA 0.445228232057316 45 0.688601576612435 1 NA NA -5.76460668559975 LTS-030 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.572 1 NA NA NA NA NA LTS-030 chr19 35863628 37642420 1778793 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF567, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, NA NA NA NA NA NA NA NA NA LTS-030 OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, DMKN, KMT2B) 0.454012324965994 34 0.0387622788319979 1.02616716393428 3540 0.504932773340219 4 2 2 -6.82874320001993 LTS-030 NA NA NA NA LTS-030 chr19 37642421 37678109 35689 * c(ZNF585A, ZNF585B) NA 0 NA 0.553733734158033 111 0.221941493496882 2 NA NA -5.76707053561021 LTS-030 chr19 37678110 37678115 6 * ZNF585B NA 0 NA 0.821 1 NA NA NA NA NA LTS-030 chr19 37678116 38388988 710873 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.39 1 NA 0.87534718927494 942 0.387820127102887 3 3 0 -5.78767835486549 LTS-030 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 2.448 1 NA NA NA NA NA LTS-030 chr19 38571875 40389749 1817875 * c(LOC100129935, MIR4530, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, FBL, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, NA NA NA NA NA NA NA NA NA LTS-030 LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.447138198252009 107 0.0430421707234772 1.12312836568213 3845 0.574055162677002 4 2 2 -6.80063223385067 LTS-030 NA NA NA NA LTS-030 chr19 40389750 40698263 308514 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.444240479213936 7 0.0268390263112009 0.806347484570833 591 0.564785920682528 4 2 2 -6.78581524613339 LTS-030 chr19 40698264 41962394 1264131 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AKT2, CYP2G1P, PLD3, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.432860303289539 47 0.086007701395587 1.13230199622735 2567 0.526025934890135 4 2 2 -6.77776096484125 LTS-030 chr19 41962395 42026804 64410 * PCAT19 NA 0 NA 0.497 1 NA NA NA NA NA LTS-030 chr19 42026805 42315025 288221 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, CEACAM6, CEACAM21) 0.439564545682219 5 0.0394271480074327 0.675041207581259 297 0.270177808250045 2 1 1 -6.76719348021492 LTS-030 chr19 42315026 43021054 706029 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, CEACAM3, ZNF526, LYPD4, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.434019396501474 7 0.0575425308545154 1.12048192590597 1782 0.713611599261854 4 2 2 -6.74764041982482 LTS-030 chr19 43021055 43022878 1824 * c(LIPE-AS1, CEACAM1) NA 0 NA 0.729 1 NA NA NA NA NA LTS-030 chr19 43022879 43883323 860445 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P) 0.395379571121128 11 0.142522853031939 0.619704797271517 319 0.429705858558202 2 1 1 -6.79109373725477 LTS-030 chr19 43883324 44335631 452308 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, LYPD5, ZNF283, KCNN4, PINLYP, PLAUR, SMG9, IRGC, PHLDB3, XRCC1, ZNF576, TEX101) 0.455168526270305 18 0.0371469876680527 1.1345070628376 819 0.443048652859326 4 2 2 -6.8714762291279 LTS-030 chr19 44335632 44339578 3947 * ZNF283 NA 0 NA 0.795 1 NA NA NA NA NA LTS-030 chr19 44339579 45117067 777489 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, IGSF23, ZNF285, ZNF283, ZNF404, ZNF284, ZNF233, CEACAM22P, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.439678716379735 53 0.0471562806428143 0.827668792472352 1146 0.331220590720998 4 2 2 -6.8817104730748 LTS-030 chr19 45117068 45117169 102 * IGSF23 NA 0 NA 1.398 1 NA NA NA NA NA LTS-030 chr19 45117170 46627238 1510069 * c(EML2-AS1, MIR642B, APOC4-APOC2, MIR4531, TOMM40, PPP1R13L, CD3EAP, CLASRP, CKM, CLPTM1, PPM1N, KLC3, IGSF23, SIX5, ZNF296, DMPK, DMWD, ERCC1, ERCC2, FBXO46, FOSB, CBLC, EML2, IRF2BP1, GIPR, GPR4, PPP1R37, NKPD1, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, CEACAM16, BLOC1S3, BHMG1, IGFL3, BCAM, MIR330, IGFL4, NOVA2, QPCTL, CEACAM19, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, SNRPD2, MIR642A, NA NA NA NA NA NA NA NA NA LTS-030 CCDC61, VASP, MIR769, TRAPPC6A, GEMIN7, OPA3, RSPH6A, SYMPK, PGLYRP1, EXOC3L2) 0.437842749043409 48 0.0815878953222876 1.22355401844033 3081 0.557008286566283 6 3 3 -6.78628298921912 LTS-030 NA NA NA NA LTS-030 chr19 46627239 46664400 37162 * c(IGFL2, IGFL3) 0.407867915596355 3 0.101687429573833 0.77380055233358 61 0.247709115720292 3 2 1 -6.80137373908004 LTS-030 chr19 46664401 46800433 136033 * c(RNU6-66P, IGFL2, IGFL1, HIF3A, LOC93429) 0.095 1 NA 0.938245735991807 27 0.422496608998681 4 4 0 -5.7662674330696 LTS-030 chr19 46800434 48284221 1483788 * c(SNAR-E, MIR3191, MIR3190, MIR320E, NAPA-AS1, PPP5D1, DACT3-AS1, SAE1, RNU6-66P, KPTN, AP2S1, DACT3, ZC3H4, INAFM1, PRKD2, CCDC9, BBC3, C5AR2, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, NPAS1, TMEM160, PNMAL1, PPP5C, MEIS3, PTGIR, PNMAL2, SELENOW, HIF3A, SLC1A5, SLC8A2, SNORD23, C5AR1, FKRP, CALM3, CCDC8, ZNF541, NAPA, GNG8, DHX34) 0.154166063503647 50 0.0455708284779119 0.698294555100695 2256 0.348444665823684 2 2 0 -6.93532365303248 LTS-030 chr19 48284222 48602948 318727 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SELENOW, SULT2A1, PLA2G4C) 0.129238215085642 7 0.097122651960341 0.53190870754547 361 0.773556940013407 3 3 0 -6.78761374067169 LTS-030 chr19 48602949 48603016 68 * PLA2G4C NA 0 NA 0.689 1 NA NA NA NA NA LTS-030 chr19 48603017 50436353 1833337 * c(SNAR-G1, SNAR-G2, MIR4324, CARD8-AS1, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, PNKP, PTH2, CGB1, CGB2, LMTK3, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, FCGRT, ATF5, CARD8, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, IL4I1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, SLC6A16, NA NA NA NA NA NA NA NA NA LTS-030 GRIN2D, GYS1, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, LIG1, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, SULT2B1, TULP2, CA11, TBC1D17, FUZ, MED25, BCL2L12, GRWD1, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, CYTH2, CCDC114, CGB5, CGB7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 CGB8, CD37) 0.159065455798274 100 0.0628203820749317 0.764884728208763 5067 0.6999542440216 2 2 0 -6.87003345094406 LTS-030 NA NA NA NA LTS-030 chr19 50436354 50452524 16171 * c(MIR4751, SIGLEC11, ATF5) NA 0 NA 0.531 1 NA NA NA NA NA LTS-030 chr19 50452525 50473754 21230 * c(SIGLEC11, SIGLEC16) 0.12909262436768 2 0.00707106781186548 0.458026425075536 91 0.231774517810365 3 3 0 -7.14512360323339 LTS-030 chr19 50473755 50474534 780 * SIGLEC16 NA 0 NA 0.559 1 NA NA NA NA NA LTS-030 chr19 50474535 51607904 1133370 * c(SNAR-F, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, JOSD2, IZUMO2, NAPSB, KLK5, ZNF473, KLK13, EMC10, MGC45922, KLK9, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, SIGLEC16, LOC400710, KLK14, KLK12, MYBPC2, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NR1H2, MYH14, SYT3, C19orf48, CTU1, ACPT, LRRC4B, NAPSA, KLK4) 0.176182856558488 47 0.0520308650304671 0.696793872894201 2070 0.403325781764242 2 2 0 -6.85501914510067 LTS-030 chr19 51607905 51628192 20288 * c(SIGLEC9, CTU1) NA 0 NA 0.368 1 NA NA NA NA NA LTS-030 chr19 51628193 52887865 1259673 * c(SIGLEC14, LOC100129083, CLDND2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF836, ZNF610, ETFB, FPR1, FPR2, FPR3, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, HAS1, LIM2, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, NKG7, PPP2R1A, ZNF350, ZNF649, MIR643, CEACAM18, LINC01530, ZNF175, ZNF613, ZNF614, ZNF577, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, CD33, SIGLEC6, ZNF432) 0.184238821106862 49 0.0873519301096292 0.566294819988566 2041 0.354210332454526 2 2 0 -6.78063259743046 LTS-030 chr19 52887866 53514085 626220 * c(ZNF816-ZNF321P, ZNF816, ZNF534, ZNF578, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF468) 0.175171030901848 32 0.0697892492760606 0.453993331007291 677 0.324983452514763 2 2 0 -7.00667150481848 LTS-030 chr19 53514086 53517324 3239 * character(0) NA 0 NA 0.278 1 NA NA NA NA NA LTS-030 chr19 53517325 53553859 36535 * c(ERVV-2, ERVV-1) NA 0 NA 0.228677263361883 56 0.141619391144193 0 NA NA -5.78763111606099 LTS-030 chr19 53553860 53905495 351636 * c(ERVV-2, BIRC8, ZNF525, VN1R2, VN1R4, ZNF677, ZNF818P, ZNF415, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, ZNF845) 0.179445406162316 18 0.0907542289117123 0.494874122791194 605 0.337653717161595 2 2 0 -6.81464753317325 LTS-030 chr19 53905496 53910874 5379 * ZNF765 NA 0 NA 0.331 1 NA NA NA NA NA LTS-030 chr19 53910875 53996325 85451 * c(ZNF813, TPM3P9, ZNF761, ZNF765) 0.163477310621806 16 0.0806973770742685 0.336679672147859 187 0.354333314400734 2 2 0 -6.86567258354423 LTS-030 chr19 53996326 53996406 81 * ZNF813 NA 0 NA 1.025 1 NA NA NA NA NA LTS-030 chr19 53996407 54610553 614147 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, OSCAR, ZNF813, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, NA NA NA NA NA NA NA NA NA LTS-030 MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, NLRP12, MYADM) 0.173298712715852 27 0.0722755490173197 0.51847005262504 1070 0.34227950692317 2 2 0 -6.80545025882618 LTS-030 NA NA NA NA LTS-030 chr19 54610554 54610667 114 * TFPT NA 0 NA 1.13 1 NA NA NA NA NA LTS-030 chr19 54610668 54742481 131814 * c(LILRB3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.26035303157671 30 0.122032198502135 0.758366503863673 617 0.382533850141161 4 3 1 -6.83482125041183 LTS-030 chr19 54742482 54800203 57722 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA6) 0.179161727655281 9 0.1188686249605 0.39855207912224 223 0.284205951283075 2 2 0 -6.81173407185174 LTS-030 chr19 54800204 54818380 18177 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.133657971080179 40 0.115780738843641 0 NA NA -5.8862661342259 LTS-030 chr19 54818381 54976702 158322 * c(LENG8, CDC42EP5, LILRA4, LILRA5, LAIR1, TTYH1, LENG9) 0.159678067901733 5 0.10977112552944 0.5725993139993 462 0.31343831983362 2 2 0 -6.73638757024635 LTS-030 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.233 1 NA NA NA NA NA LTS-030 chr19 55009101 55385916 376816 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR2, LILRP2, KIR3DX1) 0.199221239977834 6 0.0256261585103971 0.383113917132127 630 0.223065039309575 1 1 0 -8.3820558453283 LTS-030 chr19 55385917 55386722 806 * FCAR NA 0 NA 0.726 1 NA NA NA NA NA LTS-030 chr19 55386723 55536646 149924 * c(RNU6-64P, NLRP7, FCAR, GP6, NLRP2, NCR1) 0.160398189131544 22 0.0668738555349739 0.527556297446229 342 0.296677358248009 2 2 0 -6.75225406240085 LTS-030 chr19 55536647 56243418 706772 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.152253830193036 58 0.0506847635000764 0.72839455964179 2130 0.360560389564613 2 2 0 -6.89353117323632 LTS-030 chr19 56243419 56573120 329702 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11, NLRP9, RFPL4A, RFPL4AL1) 0.220115859532391 45 0.0977370984019907 0.396767082399404 614 0.277530786145292 1 1 0 -6.78198744106086 LTS-030 chr19 56573121 56719853 146733 * c(NLRP5, ZNF787, ZSCAN5B, ZNF444, GALP) 0.160505079233992 8 0.0734555259031905 0.67327954103564 148 0.340000268418072 2 2 0 -6.74574728990857 LTS-030 chr19 56719854 56758756 38903 * ZSCAN5A NA 0 NA 0.554037958441867 53 0.212768029547857 2 NA NA -5.76752120587093 LTS-030 chr19 56758757 56981382 222626 * c(ZNF542P, ZNF582, ZNF583, ZNF582-AS1, ZNF667, ZSCAN5A) 0.11 1 NA 0.886430801422945 245 0.34143544141717 3 3 0 -5.77662142965707 LTS-030 chr19 56981383 57175799 194417 * c(ZNF667-AS1, ZFP28, SMIM17, ZNF470, ZNF471, ZNF71, ZNF667, ZNF835) 0.0903783276445657 9 0.0335799212493286 0.931057026361128 254 0.41230662729283 4 4 0 -6.77428079802445 LTS-030 chr19 57175800 57175832 33 * ZNF835 NA 0 NA 0.754 1 NA NA NA NA NA LTS-030 chr19 57175833 57647258 471426 * c(MIMT1, PEG3-AS1, ZIM3, ZIM2, PEG3, USP29, ZNF835) 0.131722058096525 17 0.0576777304358909 0.6561431937166 404 0.321621398321368 3 3 0 -6.8496379160637 LTS-030 chr19 57647259 57647261 3 * ZIM3 NA 0 NA 0.911 1 NA NA NA NA NA LTS-030 chr19 57647262 58509789 862528 * c(ZNF587B, ZNF256, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, C19orf18, ZNF418, ZNF417, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZNF549, ZNF547, ZIK1, ZNF776, ZNF530, ZNF773, ZNF749, ZNF805, ZNF772, DUXA, ZNF586, ZNF416, VN1R1, ZNF304, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551, ZNF264) 0.125822226034014 42 0.068191112870846 0.903585273435027 2015 0.693519013533456 3 3 0 -6.74976059765964 LTS-030 chr19 58509790 58509979 190 * ZNF606 NA 0 NA 2.091 1 NA NA NA NA NA LTS-030 chr19 58509980 59082368 572389 * c(A1BG, LOC100128398, MZF1-AS1, MIR4754, TRIM28, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF544, ZSCAN1, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, MZF1, ZNF132, ZNF135, ZNF329, ZNF606, ZBTB45, UBE2M) 0.0960163253661389 53 0.0375712482326455 1.08088188503261 1360 0.46124192061388 4 4 0 -6.74613758058994 LTS-030 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 0.901908041607612 17 0.195884138174165 4 NA NA -5.76468213658893 LTS-030 chr20 68260 207889 139630 * c(DEFB127, DEFB125, DEFB128, DEFB126) 0.495 1 NA 0.45457840461729 65 0.231540013571338 1 1 0 -5.7916823916247 LTS-030 chr20 207890 240174 32285 * c(DEFB129, DEFB132) 0.442878412100697 3 0.0504678115237822 0.544957348498414 39 0.244249949409974 2 1 1 -6.74014157413484 LTS-030 chr20 240175 1106259 866085 * c(RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, CSNK2A1, RSPO4, DEFB132, ANGPT4, TRIB3, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1) 0.462366237140084 24 0.0245037338178183 1.09643797429375 1111 0.578403867497293 4 2 2 -7.26177604173659 LTS-030 chr20 1106260 3129877 2023618 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, NOP56, TMC2, SIRPD, C20orf141, SIRPA, STK35, FKBP1A, UBOX5, SDCBP2, GNRH2, SIRPB2, IDH3B, TGM6, C20orf202, OXT, PDYN, AVP, TMEM74B, SIRPG, NSFL1C, CPXM1, EBF4, PTPRA, FASTKD5, RAD21L1, VPS16, PCED1A, MRPS26, SNRPB, SNORA51, SNORD110, TGM3, ZNF343, PSMF1, SNPH) 0.436638363420252 63 0.0917407297503987 0.925858296252974 2426 0.449615636670626 4 2 2 -6.76874706998884 LTS-030 chr20 3129878 3914238 784361 * c(UBOX5-AS1, MIR103B2, CENPB, RNF24, HSPA12B, UBOX5, SPEF1, C20orf194, ITPA, MIR103A2, C20orf27, AP5S1, MAVS, FASTKD5, GFRA4, DDRGK1, SIGLEC1, PANK2, ADAM33, SLC4A11, ATRN, LZTS3, CDC25B) 0.443038705951434 35 0.0372708235180588 1.17521131651875 1877 0.519615146212085 4 2 2 -6.78647070324205 LTS-030 chr20 3914239 10617019 6702781 * c(SNAP25-AS1, PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, SLX4IP, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, LAMP5, TMEM230, PCNA, TRMT6, PLCB4, HAO1, SMOX, CRLS1, FERMT1, PRNP, TMX4, GPCPD1, PAK5, ANKEF1, LOC643406, BMP2, SNAP25, LINC01433, MKKS, MCM8, CDS2, RASSF2, SLC23A2) 0.421974823553661 84 0.0856509648497329 0.912761988169648 3079 0.438436941612328 4 2 2 -6.92509887425068 LTS-030 chr20 10617020 10618292 1273 * character(0) NA 0 NA 1.387 1 NA NA NA NA NA LTS-030 chr20 10618293 10654540 36248 * JAG1 0.438988996855476 5 0.0431427861872643 1.39338112391329 202 0.852586185733294 6 3 3 -6.73307011643908 LTS-030 chr20 10654541 11008402 353862 * JAG1 NA 0 NA 0.582 1 NA NA NA NA NA LTS-030 chr20 11008403 26188981 15180579 * c(C20orf78, LOC100130264, LOC100134868, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, LINC00656, XRN2, BTBD3, CD93, NINL, FLRT3, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, FAM182A, MIR663AHG, LINC00652, NXT1, VSX1, FOXA2, NA NA NA NA NA NA NA NA NA LTS-030 LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, KIZ, OTOR, APMAP, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, GZF1, NKX2-4, SNRPB2, SSTR4, SNORD17, THBD, MIR663A, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.418867325512678 107 0.0972935429706988 0.993955194118359 6189 0.520140490227038 4 2 2 -6.75894390640507 LTS-030 NA NA NA NA LTS-030 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.96087791738893 5 0.69437396264549 9 NA NA -5.76441015600637 LTS-030 chr20 29625845 29625876 32 * FRG1BP 0.264 1 NA 1.223 1 NA NA NA NA NA LTS-030 chr20 29625877 30053429 427553 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP) 0.352793900405345 16 0.093505703925839 0.759914907334446 173 0.33420300448291 3 2 1 -6.7680568601181 LTS-030 chr20 30053430 30060650 7221 * DEFB124 NA 0 NA 2.428 1 NA NA NA NA NA LTS-030 chr20 30060651 36993452 6932802 * c(MCTS2P, LOC100287792, MIR3193, TGIF2-C20orf24, MIR499B, MIR4755, LINC00489, HM13-AS1, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, CEP250, PXMP4, VSTM2L, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, BPIFA2, NOL4L, MROH8, CCM2L, SOGA1, TLDC2, SUN5, ROMO1, C20orf173, LINC00028, CNBD2, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, EPB41L1, DLGAP4, RALY, NA NA NA NA NA NA NA NA NA LTS-030 MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB124, SAMHD1, AAR2, TRPC4AP, GGT7, GHRH, C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, EIF6, LBP, ASIP, NNAT, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, UQCC1, EDEM2, ACSS2, C20orf24, CTNNBL1, NDRG3, MIR499A, MYH7B, TP53INP2, RPRD1B, RBL1, BCL2L1, TGIF2, RPN2, MANBAL, NECAB3, NORAD, SNTA1, SPAG4, BPI, SRC, MIR644A, TGM2, DSN1, BPIFB2, HM13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 PDRG1, GDF5, DYNLRB1, ITCH, SLA2, MAP1LC3A, COX4I2, ZNF341, MYLK2, KIAA1755, EIF2S2, CPNE1, NFS1, CBFA2T2, BPIFB1, KIF3B, RBM39, TTI1, TM9SF4) 0.446488090310479 139 0.0425379589082072 1.05786586652734 10049 0.564211560193793 4 2 2 -6.79445592744752 LTS-030 NA NA NA NA LTS-030 chr20 36993453 36995346 1894 * LBP NA 0 NA 0.889 1 NA NA NA NA NA LTS-030 chr20 36995347 42242641 5247295 * c(SGK2, PTPRT, SNHG11, SLC32A1, ADIG, ZHX3, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, IFT52, PLCG1, RALGAPB, DHX35, SRSF6, LPIN3, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, CHD6, EMILIN3, MAFB) 0.446152231916499 38 0.0484387252059058 0.905720835897228 2867 0.392110659189631 4 2 2 -6.94178988301521 LTS-030 chr20 42242642 42247485 4844 * IFT52 NA 0 NA 1.338 1 NA NA NA NA NA LTS-030 chr20 42247486 43561456 1313971 * c(ADA, MIR3646, OSER1-AS1, SERINC3, PKIG, FITM2, RIMS4, R3HDML, GTSF1L, HNF4A, MYBL2, IFT52, OSER1, JPH2, KCNK15, YWHAB, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, WISP2) 0.404384050372792 12 0.0568146908018436 1.35943023678998 1380 0.845352179376746 5 3 2 -6.75778292589033 LTS-030 chr20 43561457 43561654 198 * PABPC1L 0.32 1 NA 0.605667726944201 7 0.30293673707008 2 2 0 -5.76441030203548 LTS-030 chr20 43561655 54572808 11011154 * c(ACOT8, SNORD12B, ZNF663P, LOC100131496, MIR3194, MIR3616, STK4-AS1, EPPIN-WFDC6, MIR4756, ATP9A, TRERNA1, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, UBE2C, TP53RK, RBPJL, DNTTIP1, WFDC12, SPATA25, OCSTAMP, TSHZ2, WFDC3, CBLN4, NEURL2, ZSWIM3, WFDC10A, WFDC6, FAM65C, CSE1L, WFDC5, CYP24A1, WFDC13, EYA2, SLC9A8, ADNP, ZMYND8, WFDC11, WFDC9, SNORD12C, TP53TG5, MOCS3, WFDC10B, LINC00494, LINC01270, KCNB1, KCNG1, NA NA NA NA NA NA NA NA NA LTS-030 KCNS1, TMEM189, TMEM189-UBE2V1, SPINT4, SUMO1P1, MMP9, ZFAS1, NFATC2, SLC35C2, PIGT, PFDN4, PI3, PLTP, CTSA, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, EPPIN, SALL4, ZNFX1, PTGIS, SLC12A5, PREX1, PTPN1, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLC13A3, SLPI, SNAI1, STAU1, STK4, SNORD12, MIR645, TNNC2, UBE2V1, SYS1-DBNDD2, MKRN7P, ZNF217, PABPC1L, SLC2A10, NCOA3, PARD6B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 BCAS1, MATN4, DPM1, SYS1, WFDC8, SNX21, ZSWIM1, B4GALT5, CD40, SPATA2) 0.323687154292134 152 0.0656161319922385 1.38738226945624 8244 0.760646353902574 6 4 2 -6.87897658007308 LTS-030 NA NA NA NA LTS-030 chr20 54572809 55205396 632588 * c(FAM210B, GCNT7, CBLN4, CSTF1, FAM209A, FAM209B, MC3R, RTFDC1, CASS4, AURKA, TFAP2C) 0.282353792502849 7 0.0423151441988732 1.02105807886215 533 0.458803773164242 4 3 1 -6.82934100351792 LTS-030 chr20 55205397 57617932 2412536 * c(MIR298, MIR4325, MTRNR2L3, SLMO2-ATP5E, MIR4532, MIR5095, C20orf85, CTCFL, APCDD1L-AS1, GNAS-AS1, CTSZ, APCDD1L, SPO11, GNAS, MIR296, PRELID3B, PCK1, ATP5E, NELFCD, PPP4R1L, RBM38, PMEPA1, RAB22A, BMP7, TFAP2C, NPEPL1, TUBB1, ZBP1, RAE1, STX16, VAPB) 0.297706933598513 56 0.0558401678959631 1.29535181534906 2304 0.67233352015671 7 5 2 -6.91357164664962 LTS-030 chr20 57617933 57768607 150675 * ZNF831 0.300959949637684 3 0.0475709995690652 0.801529790067533 63 0.282553318650099 4 3 1 -6.78861407695305 LTS-030 chr20 57768608 57832984 64377 * ZNF831 0.213 1 NA 0.922563990571664 123 0.298296392600041 4 4 0 -5.76722870931565 LTS-030 chr20 57832985 60504847 2671863 * c(CDH4, LOC100506384, MIR4533, SYCP2, PHACTR3, ZNF831, EDN3, C20orf197, MIR646HG, PPP1R3D, CDH26, FAM217B) 0.250133994135955 8 0.115522106727921 1.0697226021678 951 0.572229282578381 5 4 1 -6.79757757503861 LTS-030 chr20 60504848 60878854 374007 * c(CDH4, MIR1257, ADRM1, HRH3, LSM14B, SS18L1, MTG2, PSMA7, TAF4, OSBPL2) 0.245794551073405 11 0.0539267179521516 1.53005829874246 652 0.63771543178225 5 4 1 -6.76797396131961 LTS-030 chr20 60878855 60879519 665 * ADRM1 NA 0 NA 2.354 1 NA NA NA NA NA LTS-030 chr20 60879520 60927431 47912 * c(MIR4758, ADRM1, LAMA5) 0.253687575937926 24 0.0314250892104391 1.96663738397326 452 0.810421517898967 9 7 2 -6.74295850966562 LTS-030 chr20 60927432 60942173 14742 * LAMA5 NA 0 NA 2.76857317065155 19 0.866848199611438 13 NA NA -5.76441218870095 LTS-030 chr20 60942174 60962289 20116 * c(LAMA5, RPS21) NA 0 NA 0.664 1 NA NA NA NA NA LTS-030 chr20 60962290 60988904 26615 * c(RBBP8NL, RPS21, CABLES2) 0.057 1 NA 1.34067987607063 159 0.54176248530003 6 6 0 -5.7645161835319 LTS-030 chr20 60988905 62220599 1231695 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, EEF1A2, C20orf166-AS1, GMEB2, SLCO4A1, KCNQ2, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, MRGBP, ARFGAP1, PTK6, COL20A1, SLC17A9, LOC63930, SRMS, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, HELZ2) 0.078651249312815 57 0.0385644173521951 1.1350235051878 2571 0.711138455288809 5 5 0 -6.7430635661137 LTS-030 chr20 62220600 62701070 480471 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, SAMD10, ABHD16B, PRPF6, GMEB2, LINC00176, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, TNFRSF6B) 0.0805801417387834 13 0.028612799717824 1.41435633355132 1463 0.652071898204481 5 5 0 -6.75339706586426 LTS-030 chr20 62701071 62701092 22 * TCEA2 0.083 1 NA 0.39 1 NA NA NA NA NA LTS-030 chr20 62701093 62907521 206429 * c(RGS19, LKAAEAR1, NPBWR2, MYT1, OPRL1, PCMTD2, TCEA2) 0.0799658658802636 10 0.0604442810455308 1.03422851491993 464 0.487756636501995 5 5 0 -6.74550158976944 LTS-030 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.17226766221823 11 0.292534224881932 5 NA NA -5.76461720597916 LTS-030 chr21 9825764 9907222 81459 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.336 1 NA 0.441354935288009 25 0.601090675356056 1 1 0 -5.76584170857522 LTS-030 chr21 9907223 11098723 1191501 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.332094290511713 33 0.0902419726976513 0.753938452046889 173 0.893175778575714 3 2 1 -6.85953818104069 LTS-030 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 1.45984190603812 3 0.098726896031426 6 NA NA -5.76441468786703 LTS-030 chr21 14745307 14756794 11488 * character(0) 0.479 1 NA 0.833037714104375 9 0.914554824916351 3 3 0 -5.76442413273096 LTS-030 chr21 14756795 16340539 1583745 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.437108898018449 15 0.05772281879399 0.731218468125366 590 0.384162891652688 2 1 1 -6.98002264356414 LTS-030 chr21 16340540 16340621 82 * NRIP1 NA 0 NA 1.029 1 NA NA NA NA NA LTS-030 chr21 16340622 31312350 14971729 * c(GRIK1-AS2, LINC01549, MIR4759, RWDD2B, RNU6-67P, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, GRIK1, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, GRIK1-AS1, NA NA NA NA NA NA NA NA NA LTS-030 NRIP1, ADAMTS1) 0.429775126707853 82 0.0926084778604802 0.981751998719471 2889 0.603219915366074 4 2 2 -6.74688297634672 LTS-030 NA NA NA NA LTS-030 chr21 31312351 31538170 225820 * character(0) NA 0 NA 0.503 1 NA NA NA NA NA LTS-030 chr21 31538171 32491064 952894 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.45978512430932 6 0.0257092719979907 0.537941473728177 563 0.213706788317801 2 1 1 -7.25420093825095 LTS-030 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.153 1 NA NA NA NA NA LTS-030 chr21 32491171 33887759 1396589 * c(LINC00159, HUNK, MIS18A, MRAP, SCAF4, EVA1C, SOD1, SNORA80A, TIAM1, URB1-AS1, URB1) 0.444008627782588 42 0.0804803378790967 1.14128644415232 1044 0.691524085704775 4 2 2 -6.76614834110068 LTS-030 chr21 33887760 43342046 9454287 * c(LOC100133286, IL10RB-AS1, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, LINC00310, B3GALT5-AS1, OLIG1, TCP10L, LCA5L, IGSF5, LINC00479, DSCAM, RCAN1, DYRK1A, PLAC4, ERG, ETS2, MORC3, CLDN14, DSCR9, NA, BACE2, DSCR10, C2CD2, GART, LINC00323, DONSON, HLCS, HMGN1, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, NA NA NA NA NA NA NA NA NA LTS-030 LINC00114, MX1, MX2, PCP4, PIGP, RIPPLY3, ATP5O, BRWD1, LINC00160, SMIM11A, C21orf62-AS1, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, C21orf59, PRDM15, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SON, TMPRSS2, TTC3, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, PAXBP1, CRYZL1, DOPEY2, KCNE2) 0.428923091371236 178 0.0734909877745079 0.995917982917986 7739 0.955870375518733 4 2 2 -6.74360257328493 LTS-030 NA NA NA NA LTS-030 chr21 43342047 43766560 424514 * c(UMODL1-AS1, C2CD2, ZBTB21, TFF2, TFF3, UMODL1, ABCG1) 0.403623211894793 20 0.0586939206033255 0.773296233085442 564 0.357004432583363 3 2 1 -6.88974464055411 LTS-030 chr21 43766561 43767745 1185 * TFF2 NA 0 NA 0.605720688945155 11 0.234642745853815 2 NA NA -5.76441183730329 LTS-030 chr21 43767746 43769966 2221 * TFF2 NA 0 NA 2.046 1 NA NA NA NA NA LTS-030 chr21 43769967 43786512 16546 * c(TFF1, TFF2) 0.294 1 NA 1.10328431960233 27 0.475089792082834 5 5 0 -5.76472436990646 LTS-030 chr21 43786513 45398007 1611495 * c(WDR4, HSF2BP, LINC00313, CRYAA, CSTB, SIK1, RRP1B, LINC00319, AATBC, NDUFV3, PDE9A, PKNOX1, UBASH3A, SLC37A1, AGPAT3, TMPRSS3, TFF1, U2AF1, PDXK, RRP1, CBS, RSPH1) 0.356253636659694 14 0.123082323027144 1.04811957629365 1820 0.546602223998198 4 3 1 -6.86564705598808 LTS-030 chr21 45398008 45400811 2804 * AGPAT3 NA 0 NA 0.806 1 NA NA NA NA NA LTS-030 chr21 45400812 46644473 1243662 * c(ITGB2-AS1, LRRC3-AS1, ADARB1, TSPEAR-AS2, ICOSLG, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, PFKL, TSPEAR, AGPAT3, PWP2, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, LRRC3, C21orf33, LINC01547, FAM207A) 0.358428938626967 76 0.0975901454616606 0.910344490841603 2400 0.528841496073533 3 2 1 -6.79193985864242 LTS-030 chr21 46644474 46644563 90 * ADARB1 0.467 1 NA 2.08035480851784 3 0.194057551600893 9 9 0 -5.76441217100344 LTS-030 chr21 46644564 47316286 671723 * c(LOC100129027, COL18A1-AS2, ADARB1, POFUT2, COL18A1-AS1, PCBP3, LOC642852, SLC19A1, COL18A1) 0.395303379057479 30 0.0613344327737541 0.916215454629431 637 0.46175921597357 3 2 1 -6.84320229138228 LTS-030 chr21 47316287 47319422 3136 * PCBP3 NA 0 NA 1.717 1 NA NA NA NA NA LTS-030 chr21 47319423 48084989 765567 * c(DIP2A-IT1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, PRMT2, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, SPATC1L, MCM3AP) 0.435078673621251 60 0.0809417224265615 1.2091533503187 1811 0.606802288100218 6 3 3 -6.76117533929114 LTS-030 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 1.618 1 NA NA NA NA NA LTS-030 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.445 1 NA 1.18084509687697 6 1.85430260924874 5 5 0 -5.76444519941816 LTS-030 chr22 16887896 17072709 184814 * CCT8L2 0.018 1 NA 0.471622090987604 107 0.236001166353454 1 1 0 -5.82088264355992 LTS-030 chr22 17072710 21576319 4503610 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, COMT, CRKL, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, TSSK2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, SERPIND1, TPTEP1, CCDC188, LRRC74B, BCRP2, MIR185, ARVCF, NA NA NA NA NA NA NA NA NA LTS-030 THAP7-AS1, P2RX6P, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC7A4, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UFD1L, ZNF74, C22orf29, THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, RIMBP3, SCARF2, P2RX6, SNAP29, DGCR2) 0.43500450615162 125 0.0838473651652888 1.06688380544863 6052 0.598600079995285 4 2 2 -6.76560064560658 LTS-030 NA NA NA NA LTS-030 chr22 21576320 21797024 220705 * c(HIC2, POM121L8P) NA 0 NA 2.858 1 NA NA NA NA NA LTS-030 chr22 21797025 22221704 424680 * c(MIR301B, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, YPEL1, PI4KAP2, MIR130B, MAPK1, TMEM191C, UBE2L3) 0.344335140560805 7 0.064692680089349 1.51348626731911 648 0.919812500108303 6 4 2 -6.75533220982168 LTS-030 chr22 22221705 22239784 18080 * MAPK1 NA 0 NA 0.475 1 NA NA NA NA NA LTS-030 chr22 22239785 22569430 329646 * c(TOP3B, PPM1F) 0.46998110478591 7 0.0177830845254161 0.954541393713461 368 0.431403592600439 4 2 2 -8.18492658184664 LTS-030 chr22 22569431 22569434 4 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-030 chr22 22569435 22578491 9057 * character(0) NA 0 NA 0.338397657969111 40 0.374092679281896 1 NA NA -5.76543827537187 LTS-030 chr22 22578492 23482682 904191 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, RSPH14, GNAZ, LL22NC03-63E9.3, MIR650, VPREB1, GGTLC2, BMS1P20) 0.424968771133849 55 0.0807506032959503 0.845234654040081 864 0.88811826356761 4 2 2 -6.76955897209128 LTS-030 chr22 23482683 23487465 4783 * RSPH14 NA 0 NA 2.633 1 NA NA NA NA NA LTS-030 chr22 23487466 24342396 854931 * c(DDTL, ZDHHC8P1, C22orf15, DDT, GSTTP1, FBXW4P1, RGL4, MIF-AS1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3, RAB36) 0.445659915963759 22 0.0479519059202581 1.04567193174791 1081 0.555936208664223 4 2 2 -6.74917271652874 LTS-030 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.127 1 NA NA NA NA NA LTS-030 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0831018774081869 55 0.0559918043545853 0 NA NA -8.90987823289342 LTS-030 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 1.045 1 NA NA NA NA NA LTS-030 chr22 24400149 26351285 1951137 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.43475266061838 44 0.0764307228221774 0.992475278931052 1974 0.5095648385991 4 2 2 -6.734837941735 LTS-030 chr22 26351286 26388276 36991 * MYO18B NA 0 NA 0.712 1 NA NA NA NA NA LTS-030 chr22 26388277 26779623 391347 * c(SEZ6L, MYO18B) NA 0 NA 0.612591714345355 229 0.227332930396426 2 NA NA -5.76676425835525 LTS-030 chr22 26779624 26829322 49699 * ASPHD2 NA 0 NA 1.314 1 NA NA NA NA NA LTS-030 chr22 26829323 29755943 2926621 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, AP1B1, EWSR1, TTC28, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, SRRD, MN1, MIAT, ASPHD2, XBP1, KREMEN1, ZNRF3, TPST2, HPS4) 0.44073906411192 49 0.0508719798448354 1.07247231899712 2219 0.530281039016766 4 2 2 -6.7644665752311 LTS-030 chr22 29755944 29887378 131435 * c(RFPL1S, AP1B1, NEFH, RFPL1) 0.461595793618235 4 0.0409745856192185 0.650150716539832 165 0.360971691220417 2 1 1 -6.91978656008826 LTS-030 chr22 29887379 29901811 14433 * character(0) NA 0 NA 2.559 1 NA NA NA NA NA LTS-030 chr22 29901812 31600451 1698640 * c(MIR3200, MIR3928, SF3A1, SELENOM, HORMAD2, DUSP18, MORC2-AS1, CABP7, RNF215, MORC2, PES1, SEC14L2, OSBP2, SEC14L3, INPP5J, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, NF2, OSM, PLA2G3, MTFP1, TUG1, CCDC157, ZMAT5, SMTN, GATSL3, TCN2, SEC14L6, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, RNF185, GAL3ST1) 0.450574320328189 62 0.050242839691276 1.10823168781031 3032 0.571627261708138 4 2 2 -6.79945846493989 LTS-030 chr22 31600452 31602755 2304 * RNF185 NA 0 NA 0.575381892794765 60 0.156940503858668 2 NA NA -5.76449943717369 LTS-030 chr22 31602756 32099760 497005 * c(PIK3IP1, PATZ1, PISD, PRR14L, LIMK2, DRG1, EIF4ENIF1, RNF185, SFI1) NA 0 NA 1.20764856254138 983 0.586388165626505 5 NA NA -5.76443986141006 LTS-030 chr22 32099761 32100629 869 * PRR14L NA 0 NA 0.899 1 NA NA NA NA NA LTS-030 chr22 32100630 35690462 3589833 * c(HMGXB4, LARGE-AS1, MIR4764, RFPL3S, RFPL3, RFPL2, C22orf42, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, LOC339666, RTCB, SLC5A1, SLC5A4, TIMP3, YWHAH, SYN3, ISX, LARGE1, DEPDC5) 0.43113565130491 36 0.0542263919812261 0.874567840035367 1727 0.569945919953638 4 2 2 -6.86129815797999 LTS-030 chr22 35690463 35690467 5 * HMGXB4 NA 0 NA 1.489 1 NA NA NA NA NA LTS-030 chr22 35690468 36002886 312419 * c(HMGXB4, TOM1, MIR3909, RASD2, HMOX1, MB, MCM5) 0.47746576822251 9 0.0192815398186394 1.19705125715651 369 0.606298334844164 6 3 3 -8.52723876727027 LTS-030 chr22 36002887 36677904 675018 * c(RBFOX2, APOL2, MB, MYH9, APOL6, APOL5, APOL4, APOL3, APOL1) 0.453786337543966 11 0.0457175120614728 0.842504410775831 671 0.395070056832164 4 2 2 -6.87344093296959 LTS-030 chr22 36677905 36902368 224464 * c(TXN2, MYH9, FOXRED2) NA 0 NA 1.40376761797165 358 0.636021969485058 6 NA NA -5.76441125261509 LTS-030 chr22 36902369 37876362 973994 * c(LL22NC01-81G9.3, CACNG2, IFT27, ELFN2, C1QTNF6, CSF2RB, TMPRSS6, CYTH4, CARD10, TEX33, IL2RB, MFNG, MPST, NCF4, PVALB, RAC2, SSTR3, TST, KCTD17, FOXRED2, EIF3D) 0.454369045389184 29 0.0331661365075499 0.9871243210273 1425 0.449297585567963 4 2 2 -6.86553085085594 LTS-030 chr22 37876363 37876701 339 * c(CARD10, MFNG) NA 0 NA 1.242 1 NA NA NA NA NA LTS-030 chr22 37876702 42522712 4646011 * c(LOC100130899, NDUFA6-AS1, MIR1281, LOC100506472, MIR4534, MIR4766, APOBEC3A_B, DNAL4, TAB1, SLC25A17, DDX17, TOB2, KDELR3, TRIOBP, CDC42EP1, DMC1, FAM83F, TNFRSF13C, ANKRD54, APOBEC3D, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, CYP2D6, ADSL, APOBEC3H, WBP2NL, POLR3H, APOBEC3A, APOBEC3F, EP300, TNRC6B, ZC3H7B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, XRCC6, CBY1, SUN2, TMEM184B, GGA1, SNORD43, NA NA NA NA NA NA NA NA NA LTS-030 CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, CARD10, H1F0, LINC00634, KCNJ4, LGALS1, LGALS2, LOC400927, MIR33A, MFNG, MGAT3, SHISA8, NAGA, ATF4, NDUFA6, SNU13, ACO2, EIF3L, PDGFB, PMM1, POLR2F, MIEF1, SEPT3, TOMM22, PDXP, MKL1, RANGAP1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SOX10, SREBF2, ST13, TEF, MIR658, MIR659, CENPM, NOL12, C22orf46, CCDC134, BAIAP2L2, L3MBTL2, PLA2G6, C22orf23, GALR3, PHF5A, MICALL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.45288101013206 177 0.0407598105949098 1.10497174918233 8853 0.579991882400196 4 2 2 -6.88685580831315 LTS-030 NA NA NA NA LTS-030 chr22 42522713 42522905 193 * c(NDUFA6-AS1, CYP2D6) NA 0 NA 3.676 1 NA NA NA NA NA LTS-030 chr22 42522906 42536424 13519 * c(NDUFA6-AS1, CYP2D7, CYP2D6) 0.273162749344113 3 0.087840765023991 3.17094959211767 66 1.45954780468901 19 14 5 -6.73345735949661 LTS-030 chr22 42536425 42536618 194 * CYP2D7 NA 0 NA 0.603 1 NA NA NA NA NA LTS-030 chr22 42536619 42538670 2052 * CYP2D7 0.399342036427743 4 0.0587367006223537 1.29174776041182 28 0.666347926779854 15 9 6 -6.73691410302731 LTS-030 chr22 42538671 42540610 1940 * CYP2D7 NA 0 NA 1.57012296119825 27 0.403509730445379 7 NA NA -5.76441298472487 LTS-030 chr22 42540611 42546670 6060 * character(0) NA 0 NA 0.245 1 NA NA NA NA NA LTS-030 chr22 42546671 42546852 182 * character(0) 0.139 1 NA 0.444580059784274 5 0.208893992254445 1 1 0 -5.76444033950318 LTS-030 chr22 42546853 44324676 1777824 * c(EFCAB6-AS1, PACSIN2, NFAM1, PNPLA5, CYB5R3, TTLL12, SERHL2, TTLL1, SULT4A1, ARFGAP3, RNU12, ATP5L2, RRP7A, MCAT, OGFRP1, A4GALT, BIK, EFCAB6, TCF20, TSPO, MPPED1, SCUBE1, PNPLA3, POLDIP3, RRP7BP, SERHL) 0.146530285455784 48 0.0465544560261048 0.665835908915524 1735 0.434901083985118 2 2 0 -6.8890863991445 LTS-030 chr22 44324677 44515806 191130 * c(SAMM50, PARVB, PNPLA3) 0.184 1 NA 0.598419514125296 193 0.248255145312251 2 2 0 -5.7644108958883 LTS-030 chr22 44515807 45591592 1075786 * c(NUP50-AS1, NUP50, PHF21B, KIAA0930, ARHGAP8, PARVB, LINC00207, LINC00229, PRR5-ARHGAP8, PRR5, PARVG, LDOC1L, KIAA1644) 0.178265812291728 28 0.0654468866604438 0.598225037182106 784 0.373078218819976 2 2 0 -6.75749731968944 LTS-030 chr22 45591593 45595721 4129 * KIAA0930 0.167 1 NA 0.640755873241974 43 0.172105150196769 2 2 0 -5.76479354984478 LTS-030 chr22 45595722 47570284 1974563 * c(LINC00899, MIR1249, MIR3619, MIR4763, MIR4762, PKDREJ, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, KIAA0930, TBC1D22A, ATXN10, RIBC2, SMC1B, MIRLET7BHG, MIRLET7A3, MIRLET7B, GTSE1, PPARA, FAM118A, TTC38, PRR34, TRMU, CERK, LOC730668, UPK3A, WNT7B, CELSR1) 0.150278659501014 42 0.0662277990763654 0.677336201880182 2354 0.340744057453042 2 2 0 -6.91372278033317 LTS-030 chr22 47570285 47857295 287011 * TBC1D22A 0.314 1 NA 0.514444646690983 33 0.201989470547653 2 2 0 -5.86018107259638 LTS-030 chr22 47857296 51183804 3326509 * c(LINC01310, CHKB-AS1, MIR3201, MIR4535, CHKB, KLHDC7B, CPT1B, TYMP, MLC1, MAPK8IP2, PLXNB2, BRD1, FAM19A5, LOC284933, NCAPH2, C22orf34, CHKB-CPT1B, LINC00898, IL17REL, ARSA, DENND6B, PIM3, ODF3B, ACR, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ALG12, CRELD2, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, NA, LMF2, PPP6R2, ZBED4, SCO2) 0.15807639732119 100 0.0554467065994661 0.660541929243877 3525 0.383613694240364 2 2 0 -6.87027257394315 LTS-030 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.152 1 NA NA NA NA NA LTS-030 chr22 51205930 51205947 18 * c(RABL2B, RPL23AP82) 0 1 NA 0.465 1 NA NA NA NA NA LTS-030 chr22 51205948 51220846 14899 * c(RABL2B, RPL23AP82) NA 0 NA 0.350137214701681 77 0.19010740299979 1 NA NA -5.7685001565218 LTS-030 chrX 2699993 2733109 33117 * XG 0.441 1 NA 0.887258892874744 45 0.360602337006495 3 3 0 -5.76607110853596 LTS-030 chrX 2733110 8498128 5765019 * c(LINC01546, MIR4770, MIR4767, MXRA5, VCX, ARSH, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, VCX2, VCX3A, PRKX, NLGN4X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.392607911881202 27 0.12588026237596 0.92833016152863 1204 0.509219413688555 4 2 2 -6.88508941426555 LTS-030 chrX 8498129 8500596 2468 * ANOS1 NA 0 NA 0.3752904700993 42 0.166797875762508 1 NA NA -5.7645969852924 LTS-030 chrX 8500597 12734293 4233697 * c(CLDN34, MSL3, CLCN4, FAM9A, FAM9B, AMELX, HCCS, SHROOM2, ANOS1, ARHGAP6, MID1, GPR143, WWC3, TBL1X, FRMPD4) 0.352850867000168 8 0.160379683430112 0.854067928139577 1628 0.417509714318696 3 2 1 -6.80600666220762 LTS-030 chrX 12734294 13338066 603773 * c(GS1-600G8.3, FAM9C, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.43772742172056 9 0.0679812065533147 0.649991361920899 566 0.357933185995409 2 1 1 -6.75210316610636 LTS-030 chrX 13338067 13338156 90 * ATXN3L NA 0 NA 0.845 1 NA NA NA NA NA LTS-030 chrX 13338157 15845313 2507157 * c(LINC01203, PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FANCB, VEGFD, EGFL6, GLRA2, GPM6B, CA5BP1, PIGA, GEMIN8, TMEM27, ACE2, TRAPPC2, BMX, ZRSR2, OFD1, PIR, INE2, AP1S2, ATXN3L, RAB9A) 0.430824025600848 20 0.0526276893299575 0.883604161826803 1705 0.459494787257727 4 2 2 -6.85339701667699 LTS-030 chrX 15845314 15845371 58 * AP1S2 NA 0 NA 0.539 1 NA NA NA NA NA LTS-030 chrX 15845372 15851062 5691 * AP1S2 0.481378069495548 2 0.0113137084989847 0.434631941464814 84 0.161855390345274 2 1 1 -10.7937839056071 LTS-030 chrX 15851063 23019935 7168873 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, GRPR, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RPS6KA3, RS1, SCML1, MAGEB17, SMS, CDKL5, LOC729609, S100G, AP1S2, REPS2, SYAP1) 0.385107984480056 21 0.141067326040407 0.871662702062506 3932 0.471969627907191 3 2 1 -6.87835886266783 LTS-030 chrX 23019936 23096437 76502 * c(PTCHD1-AS, DDX53) NA 0 NA 0.411983320408317 43 0.190576118444503 1 NA NA -5.76587241328053 LTS-030 chrX 23096438 23352114 255677 * PTCHD1-AS NA 0 NA 1.918 1 NA NA NA NA NA LTS-030 chrX 23352115 24329999 977885 * c(ZFX-AS1, PRDX4, PTCHD1, SUPT20HL2, EIF2S3, ACOT9, CXorf58, SAT1, ZFX, APOO, KLHL15) 0.401644028641659 22 0.106851800917473 0.88781860606506 988 0.432623064192299 3 2 1 -6.80881620821713 LTS-030 chrX 24330000 24382260 52261 * c(SUPT20HL1, SUPT20HL2) NA 0 NA 0.482613204151244 72 0.232723948969804 1 NA NA -5.78573255000027 LTS-030 chrX 24382261 25015090 632830 * c(SUPT20HL1, PDK3, POLA1, SCARNA23, PCYT1B) 0.330909823904781 7 0.224424024687962 0.808788542506867 448 0.441557107711342 3 2 1 -6.75477658246662 LTS-030 chrX 25015091 25034152 19062 * c(ARX, POLA1) NA 0 NA 1.41375389836519 77 0.956039571354606 6 NA NA -5.76441113049696 LTS-030 chrX 26156999 27481376 1324378 * c(PPP4R3CP, VENTXP1, MAGEB6, MAGEB18, MAGEB5) 0.49 1 NA 0.52507845063493 163 0.183103942959014 2 2 0 -6.14793713144162 LTS-030 chrX 27481377 37672252 10190876 * c(IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, MAGEB16, CYBB, FAM47A, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, LANCL3, DCAF8L2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, XK, CXorf21, TMEM47) 0.438911854102483 32 0.0890274004124211 0.761795734273223 2288 0.393463454843854 3 2 1 -7.13138291260371 LTS-030 chrX 37672253 41092026 3419774 * c(LOC100132831, ATP6AP2, CYBB, CXorf38, HYPM, LINC01281, MPC1L, OTC, BCOR, MID1IP1, RPGR, DYNLT3, TSPAN7, USP9X, SRPX, MED14, SYTL5) 0.388183051703808 4 0.0604979338490167 0.972636929777444 1490 0.468414656665209 3 2 1 -7.10820542982239 LTS-030 chrX 41092027 41200948 108922 * c(DDX3X, USP9X) NA 0 NA 2.15580945011971 39 0.749074725691213 10 NA NA -5.76446611078091 LTS-030 chrX 41200949 41201701 753 * DDX3X NA 0 NA 0.95 1 NA NA NA NA NA LTS-030 chrX 41201702 47002190 5800489 * c(FUNDC1, DDX3X, GPR82, GPR34, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, NDUFB11, KRBOX4, CHST7, NYX, RP2, DUSP21, ZNF674, LINC01545, KDM6A, CXorf36, EFHC2, PPP1R2P9, SLC9A7, CASK, RGN, JADE3) 0.437858900382266 17 0.0507913117859854 0.897151502704604 1906 0.431485405152682 4 2 2 -6.94565073218071 LTS-030 chrX 47002191 47003892 1702 * NDUFB11 NA 0 NA 1.689 1 NA NA NA NA NA LTS-030 chrX 47003893 47107594 103702 * c(CDK16, NDUFB11, UBA1, USP11, RBM10, INE1) 0.479991533288582 6 0.0198536310700755 1.19152046886119 572 0.511911599534949 6 3 3 -8.61332688607218 LTS-030 chrX 47107595 48761724 1654130 * c(SNORA11C, HDAC6, UXT-AS1, MIR4769, PQBP1, SSX3, TIMM17B, EBP, ELK1, FTSJ1, GATA1, PCSK1N, SSX6, SSX9, ERAS, ZNF81, ARAF, SPACA5, CXXC1P1, GLOD5, TBC1D25, CFP, ZNF630, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, TIMP1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, USP11, UXT, SLC38A5) 0.396316526883051 17 0.0604866295386111 0.864128901762056 2141 0.460265038692189 3 2 1 -6.84584060471452 LTS-030 chrX 48761725 49137702 375978 * c(PIM2, WDR45, PRAF2, GPKOW, CCDC22, KCND1, PRICKLE3, FOXP3, PLP2, OTUD5, GRIPAP1, SYP, TFE3, SLC35A2, CACNA1F, MAGIX, PPP1R3F, CCDC120) 0.386771978960819 15 0.0544148964198311 1.0142087231843 1536 0.517938696829708 3 2 1 -6.81603593330728 LTS-030 chrX 49137703 53108335 3970633 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.410086109351027 13 0.0634988390768096 0.779253570499409 1385 0.372507638320959 3 2 1 -6.93755233258966 LTS-030 chrX 53108336 54781617 1673282 * c(HUWE1, RIBC1, FGD1, IQSEC2, PHF8, HSD17B10, ITIH6, MIRLET7F2, MIR98, GPR173, GNL3L, FAM120C, TSPYL2, WNK3, KDM5C, SMC1A, TSR2) 0.43151284732322 8 0.0567914417596776 0.949820247074338 2361 0.506084094931798 4 2 2 -6.75283383003132 LTS-030 chrX 54781618 54783372 1755 * ITIH6 NA 0 NA 0.487 1 NA NA NA NA NA LTS-030 chrX 54783373 57932398 3149026 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, PAGE2, ALAS2, APEX2, MAGEH1, UBQLN2, ITIH6, PAGE2B, UQCRBP1, SPIN2B, PFKFB1, SPIN2A, LINC01420, SNORA11, TRO, ZXDA, FAM104B, PAGE5) 0.283604369403614 15 0.119899243414746 0.804156706651585 1346 0.448513990218438 3 2 1 -7.05266050914073 LTS-030 chrX 57932399 57937169 4771 * ZXDA NA 0 NA 0.832649987739599 95 0.418811958061139 3 NA NA -5.76443722994388 LTS-030 chrX 61999880 65252601 3252722 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278) 0.352 1 NA 0.833449430062462 1040 0.472524960408328 3 3 0 -5.77957827429042 LTS-030 chrX 65252602 71934101 6681500 * c(MIR676, VSIG4, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, CITED1, NONO, OPHN1, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, TAF1, OGT, SLC7A3, ZMYM3, ACRC, STARD8, HEPH, MED12) 0.424292680890263 27 0.115921503060454 0.872716687938901 4728 0.424204791931683 3 2 1 -7.01309154301944 LTS-030 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.315 1 NA NA NA NA NA LTS-030 chrX 72066651 72299220 232570 * c(PABPC1L2A, PABPC1L2B, FAM226B) 0.369915244651051 3 0.0135769412362775 0.382775526228175 93 0.364948752702502 3 2 1 -7.29376241884663 LTS-030 chrX 72299221 75397860 3098640 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, UPRT, MAGEE2, ZDHHC15, ABCB7, TTC3P1, PABPC1L2A, KIAA2022, ZCCHC13, MIR374A, NAP1L2, RLIM, PBDC1, CHIC1, JPX, NAP1L6, SLC16A2, MIR545, MIR421, XIST, TSIX) 0.449817623924797 5 0.0431416272293941 0.853933181957635 1581 0.412480762410226 4 2 2 -7.03382777102758 LTS-030 chrX 75397861 75651791 253931 * c(PBDC1, MAGEE1) NA 0 NA 0.806274164970436 83 0.309251605318874 3 NA NA -5.76452688851454 LTS-030 chrX 75651792 76139640 487849 * character(0) NA 0 NA 0.319 1 NA NA NA NA NA LTS-030 chrX 76139641 76937963 798323 * c(MIR384, ATRX, FGF16) 0.159 1 NA 0.564580136563256 251 0.215919222685475 2 2 0 -5.7997827151325 LTS-030 chrX 76937964 77528012 590049 * c(COX7B, PGAM4, TAF9B, PGK1, ATP7A, ATRX, MAGT1) 0.122902506409027 4 0.0558002389481144 0.623767263295095 689 0.359753089168672 3 3 0 -6.8969321194001 LTS-030 chrX 77528013 90693597 13165585 * c(UBE2DNL, MIR4328, CYSLTR1, CHM, DACH2, APOOL, HDX, PABPC5, CYLC1, FAM46D, ZCCHC5, BRWD3, RPS6KA6, P2RY10, LPAR4, SATL1, TBX22, CPXCR1, POU3F4, KLHL4, SH3BGRL, ZNF711, HMGN5, POF1B, GPR174, TGIF2LX, ITM2A) 0.167349962432648 21 0.0865535342185071 0.49703088835849 2144 0.2687134821856 2 2 0 -9.18669169291782 LTS-030 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.196 1 NA NA NA NA NA LTS-030 chrX 91066177 91138431 72255 * PCDH11X 0.085729846319273 2 0.0572756492761103 0.218942159833317 134 0.0880039085144199 2 2 0 -10.8890502022281 LTS-030 chrX 91138432 91873721 735290 * PCDH11X NA 0 NA 0.654576846497806 58 0.449566963788966 2 NA NA -5.78167287922936 LTS-030 chrX 91873722 91878170 4449 * PCDH11X NA 0 NA 0.359136577604814 126 1.34275437196405 1 NA NA -5.76442591772288 LTS-030 chrX 91878171 100604634 8726464 * c(CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, SRPX2, PCDH11X, FAM133A, RPA4, ARL13A, XKRX, XRCC6P5, NAP1L3, TAF7L, PCDH19, TMEM35A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, SYTL4) 0.113896395965626 10 0.0571006907916961 0.565221105714172 1826 0.325768269830859 2 2 0 -7.33917686623397 LTS-030 chrX 100604635 101609367 1004733 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, TCEAL6, GLA, HNRNPH2, BEX5, ARMCX1, ARMCX3, ARMCX6, NXF5, RPL36A, BTK, ZMAT1, ARMCX2) 0.181872348422003 9 0.069231696337572 0.478854735990922 812 0.261901488277434 2 2 0 -7.17819435775587 LTS-030 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.017 1 NA NA NA NA NA LTS-030 chrX 101615285 101769135 153851 * TMSB15A NA 0 NA 0.208849330560912 59 0.262762500182285 0 NA NA -5.76850243714279 LTS-030 chrX 101769136 101769869 734 * TMSB15A NA 0 NA 0.367 1 NA NA NA NA NA LTS-030 chrX 101769870 114880423 13110554 * c(LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RBMXL3, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, IL13RA2, SLC25A53, LINC00890, GLRA4, PAK3, TCEAL9, NA NA NA NA NA NA NA NA NA LTS-030 RAB9B, LUZP4, PLP1, PLS3, NUP62CL, TBC1D8B, CXorf57, RBM41, MIR448, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, LRCH2, ZCCHC18, ARMCX5, SNORA35, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.16550858767518 61 0.0779064943244368 0.507862008542339 6587 0.257402601463608 2 2 0 -8.92121642202786 LTS-030 NA NA NA NA LTS-030 chrX 114880424 114953572 73149 * PLS3 NA 0 NA 0.535854099010334 55 0.255960226813538 2 NA NA -5.7726629605716 LTS-030 chrX 114953573 114953626 54 * character(0) NA 0 NA 0.268 1 NA NA NA NA NA LTS-030 chrX 114953627 115305446 351820 * AGTR2 NA 0 NA 0.284649060391263 62 0.0958387463887134 1 NA NA -7.6315356626893 LTS-030 chrX 115305447 115584402 278956 * c(SLC6A14, AGTR2) 0.357 1 NA 0.899083931728031 65 0.298166019190652 4 4 0 -5.78563976527551 LTS-030 chrX 115584403 128726399 13141997 * c(ZBTB33, TEX13C, PRR32, MIR1277, SLC25A5-AS1, TENM1, STAG2, PGRMC1, SLC6A14, DCAF12L1, ACTRT1, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, CT83, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, XIAP, DCAF12L2, SOWAHD, IL13RA1, LAMP2, SH2D1A, NDUFA1, OCRL, WDR44, TMEM255A, NKRF, THOC2, KIAA1210, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, SMARCA1, CT47A10, CT47A9, CT47A6, CT47A5, NA NA NA NA NA NA NA NA NA LTS-030 CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, LONRF3, CUL4B, KLHL13) 0.429129233447797 65 0.051350300538406 0.842437987206556 4326 0.472907044610239 3 2 1 -7.46199415371094 LTS-030 NA NA NA NA LTS-030 chrX 128726400 128963193 236794 * c(OCRL, ZDHHC9, SASH3, XPNPEP2, APLN) 0.413828165817936 9 0.0632497255154343 1.09690954483357 402 0.377089321938636 5 3 2 -6.74249641208688 LTS-030 chrX 128963194 128975716 12523 * ZDHHC9 NA 0 NA 0.727 1 NA NA NA NA NA LTS-030 chrX 128975717 148628393 19652677 * c(FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, FGF13-AS1, LINC00893, CXorf51B, MIR320D2, MIR514B, LINC00629, HS6ST2-AS1, CDR1, SLC9A6, ENOX2, PLAC1, UTP14A, SLITRK4, SPANXN3, MAGEC3, ADGRG4, GPR119, FMR1NB, LINC00889, ARHGAP36, FAM122B, FAM122C, NA, NA, ELF4, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, FMR1, AFF2, LDOC1, FAM127B, SNORD61, GPC3, NA NA NA NA NA NA NA NA NA LTS-030 RBMX, HTATSF1, ATP11C, LINC00632, FIRRE, HPRT1, IDS, OR13H1, CCDC160, CXorf66, IGSF1, LOC389895, UBE2NL, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, SPANXN4, SPANXN1, SPANXN2, MIR424, ZDHHC9, TFDP3, MAGEC2, VGLL1, RBMX2, STK26, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-030 MIR510, MIR514A1, MIR514A2, RAP2C, SPANXA2-OT1, BCORL1, SMIM10, SMIM10L2B, SPANXC, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, SLITRK2, MIR503HG, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, TMEM257, CXorf40A, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.39650544443664 57 0.089593851745958 0.794948691937641 6875 0.416869910642657 3 2 1 -6.77461572171816 LTS-030 NA NA NA NA LTS-030 chrX 148628394 148664789 36396 * CXorf40A NA 0 NA 0.262561168153992 48 0.178276694459018 0 NA NA -5.81940362991456 LTS-030 chrX 148664790 149014630 349841 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) NA 0 NA 0.729040503734486 147 0.345547239863335 3 NA NA -5.77929567298685 LTS-030 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.157 1 NA NA NA NA NA LTS-030 chrX 149097210 149100892 3683 * CXorf40B NA 0 NA 0.298254005667187 42 0.179460049614574 1 NA NA -5.77013459566682 LTS-030 chrX 149100893 151825944 2725052 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.439370806654785 24 0.0457561273318208 0.889894431094164 1548 0.730602085714446 4 2 2 -6.77457852995409 LTS-030 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.098 1 NA NA NA NA NA LTS-030 chrX 151869400 151995616 126217 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.433672987066017 2 0.000707106781186587 0.47199844764087 120 0.293533071161575 20 11 9 -9.9292420298472 LTS-030 chrX 151995617 153174967 1179351 * c(NA, NA, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, DUSP9, ABCD1, SRPK3, PNMA3, IDH3G, L1CAM, ARHGAP4, MAGEA1, ATP2B3, NSDHL, PLXNB3, AVPR2, HAUS7, PDZD4, BGN, SLC6A8, SSR4, ZNF185, FAM58A) 0.419344670149977 29 0.0779879048346127 0.997829845308276 2163 0.50052315309927 4 2 2 -6.76954513040278 LTS-030 chrX 153174968 153764248 589281 * c(MIR718, MIR3202-2, MIR3202-1, TEX28, DNASE1L1, EMD, FLNA, G6PD, OPN1MW, GDI1, SNORA70, HCFC1, IRAK1, ARHGAP4, MECP2, ATP6AP1, PLXNA3, OPN1LW, RENBP, FAM3A, RPL10, TAZ, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, FAM50A) 0.453491575086661 3 0.00871779788708136 1.14339804771717 2172 0.611858567821179 4 2 2 -8.12318954930133 LTS-030 chrX 153764249 154507173 742925 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, IKBKG) 0.403366755914379 10 0.068419376722615 0.875449431841305 1080 0.904443486867807 5 3 2 -6.79407777978258 LTS-030 chrX 154507174 154528460 21287 * CLIC2 NA 0 NA 0.603024998585024 29 0.227267723679807 2 NA NA -5.76442234445987 LTS-030 chrX 154528461 154563642 35182 * CLIC2 NA 0 NA 0.706 1 NA NA NA NA NA LTS-030 chrX 154563643 154580243 16601 * CLIC2 NA 0 NA 0.337731999055697 40 0.489153701396344 1 NA NA -5.7655392303 LTS-030 chrX 154580244 154774986 194743 * TMLHE NA 0 NA 1.09590806932192 39 1.72652998276211 5 NA NA -5.76473640846496 LTS-030 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.067782466857654 25 0.0726280478419552 0 NA NA -16.0377585673023 LTS-030 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.432 1 NA 1.55018156795593 19 1.53008565482822 7 7 0 -5.76656625110455 LTS-030 chrY 21154427 21154514 88 * c(CD24, TTTY14) 0 1 NA 3.52852052627655 3 2.10856570524452 17 17 0 -5.7644101404457 LTS-030 chrY 21154515 21154528 14 * c(CD24, TTTY14) NA 0 NA 2.293 1 NA NA NA NA NA LTS-030 chr1 65893 721757 655865 * c(LOC100288069, LOC729737, OR4F5) 0.286 1 NA 1.59791845762903 12 0.621673523400321 8 8 0 -5.76508492957969 LTS-031 chr1 721758 1271849 550092 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, SAMD11, DVL1, LINC01342, TTLL10, NOC2L, FAM41C, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, SDF4, CPSF3L, C1orf159, MIR429, HES4, SCNN1D, LINC01128, TNFRSF4, LINC00115, CPTP, TAS1R3, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.401106233858173 20 0.0582783700960539 0.813529203388976 1772 0.35863530232554 1 1 0 -6.79170357587589 LTS-031 chr1 1271850 1273040 1191 * DVL1 NA 0 NA 1.142 1 NA NA NA NA NA LTS-031 chr1 1273041 1608309 335269 * c(MIB2, LOC148413, DVL1, ATAD3C, SSU72, TMEM240, ANKRD65, MXRA8, AURKAIP1, MRPL20, ATAD3A, TMEM88B, FNDC10, VWA1, SLC35E2B, CCNL2, ATAD3B, MMP23B, CDK11B) 0.395473711591791 19 0.094029141930381 0.962444395593283 1288 0.529230022000901 4 3 1 -6.7463444638089 LTS-031 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.001 1 NA NA NA NA NA LTS-031 chr1 1630372 1636501 6130 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 0.51689859605858 66 0.286351807762511 0 NA NA -5.7666826622696 LTS-031 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.028 1 NA NA NA NA NA LTS-031 chr1 1637054 1646682 9629 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.289678146915914 52 0.250597903424197 0 NA NA -5.82332359428113 LTS-031 chr1 1646683 1656956 10274 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.44740394282737 11 0.0438870450961639 0.908538859803273 46 0.358777929108605 2 1 1 -6.75682185494713 LTS-031 chr1 1656957 1658810 1854 * c(SLC35E2B, SLC35E2) NA 0 NA 0.338 1 NA NA NA NA NA LTS-031 chr1 1658811 1662163 3353 * c(SLC35E2B, SLC35E2) 0.36643772887474 2 0.143542676580869 0.449361446278638 67 0.324000557676902 2 2 0 -6.74172941487028 LTS-031 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 0.744 1 NA NA NA NA NA LTS-031 chr1 1663709 2116920 453212 * c(CALML6, FAAP20, GABRD, GNB1, TMEM52, PRKCZ, NADK, SLC35E2B, CFAP74, SLC35E2) 0.406021968130969 23 0.0488016879122332 0.847466434111966 692 0.35099127649609 1 1 0 -6.79162434931687 LTS-031 chr1 2116921 2117425 505 * FAAP20 NA 0 NA 1.268 1 NA NA NA NA NA LTS-031 chr1 2117426 2344064 226639 * c(LOC100129534, RER1, FAAP20, PEX10, SKI, MORN1) 0.430747285124416 5 0.0532794519491332 1.11508618178877 424 0.512200348728731 5 3 2 -6.73832000186356 LTS-031 chr1 2344065 2399031 54967 * character(0) NA 0 NA 0.651 1 NA NA NA NA NA LTS-031 chr1 2399032 3397617 998586 * c(NA, TTC34, MIR4251, LOC115110, FAM213B, ACTRT2, ARHGEF16, HES5, LINC00982, PANK4, PRDM16, MMEL1, TNFRSF14, PLCH2) 0.393559987191776 21 0.0593966489354568 0.697624454896678 1013 0.295531232057364 1 1 0 -6.88092550429651 LTS-031 chr1 3397618 8412814 5015197 * c(LINC01134, MIR4252, MIR4689, MIR4417, UTS2, PARK7, ACOT7, TPRG1L, PHF13, CCDC27, DFFB, MEGF6, CAMTA1, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, TNFRSF9, GPR153, SMIM1, RNF207, HES3, RERE, WRAP73, SLC45A1, ERRFI1, HES2, DNAJC11, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, MIR551A, TP73, LINC01346, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, PER3, THAP3, VAMP3, CEP104, KLHL21) 0.412269043924457 87 0.0662950683430363 0.855913991478036 4037 0.473322959220721 2 1 1 -6.83308738671294 LTS-031 chr1 8412815 8923058 510244 * c(ENO1, RERE) 0.434578194985144 5 0.0546964349843754 1.24042776539079 243 0.593721732546248 5 3 2 -6.73368958185481 LTS-031 chr1 8923059 12776501 3853443 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, RBP7, CLCN6, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, DRAXIN, CENPS, MIR34A, MTHFR, NPPA, NPPB, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, NA NA NA NA NA NA NA NA NA LTS-031 SPSB1, SLC25A33, LZIC, KIAA2013, DHRS3, FBXO44, TNFRSF8, H6PD, MFN2) 0.386079623769891 104 0.08509902800174 0.858444595596113 5934 0.432172201770472 2 2 0 -6.76126750681058 LTS-031 NA NA NA NA LTS-031 chr1 12776502 12779408 2907 * AADACL3 NA 0 NA 0.343 1 NA NA NA NA NA LTS-031 chr1 12779409 13882520 1103112 * c(LRRC38, AADACL3, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, C1orf158) 0.374434018506764 21 0.0961656556850383 0.505394075525172 346 0.33153136391996 0 0 0 -7.33806103242267 LTS-031 chr1 13882521 13909931 27411 * character(0) NA 0 NA 3.507 1 NA NA NA NA NA LTS-031 chr1 13909932 16974637 3064706 * c(PDPN, MST1P2, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NBPF1, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2, CROCCP2) 0.413625150657745 129 0.0670705068025577 0.943145352844134 3392 0.467483639470283 3 2 1 -6.78051772074652 LTS-031 chr1 16974638 16974686 49 * MST1P2 NA 0 NA 0.607 1 NA NA NA NA NA LTS-031 chr1 16974687 17011540 36854 * MST1P2 0.366392212796718 8 0.0853721893492589 0.4864954071219 145 0.265599287666958 2 2 0 -6.83969592796969 LTS-031 chr1 17011541 17046605 35065 * ESPNP 0.393159573669312 16 0.0805993176149774 1.09064463252012 90 0.456848465548925 4 3 1 -6.73313956730235 LTS-031 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.266 1 NA NA NA NA NA LTS-031 chr1 17081542 17087433 5892 * c(MST1L, CROCC) 0.288563752427691 19 0.0712237229681957 0.565440751455969 154 0.422297369149788 4 4 0 -6.74488995013434 LTS-031 chr1 17087434 17087482 49 * c(MST1L, CROCC) NA 0 NA 1.305 1 NA NA NA NA NA LTS-031 chr1 17087483 17298210 210728 * c(MST1L, CROCC) 0.357216068539233 16 0.0555865691212065 1.3506686591467 206 0.682479306855565 5 4 1 -6.73672699763923 LTS-031 chr1 17298211 17298750 540 * CROCC NA 0 NA 0.822 1 NA NA NA NA NA LTS-031 chr1 17298751 18024021 725271 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, CROCC) 0.402530269395397 23 0.104340049117309 0.830904830405099 1093 0.365917443130398 1 1 0 -6.77030066863606 LTS-031 chr1 18024022 19199453 1175432 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.434842700190093 10 0.0518331725613798 0.586654719015516 472 0.273748399155757 0 0 0 -6.82641570638262 LTS-031 chr1 19199454 20305048 1105595 * c(LOC100506730, MINOS1-NBL1, MIR4695, IFFO2, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2E, HTR6, MINOS1, NBL1, MRTO4, PLA2G2A, RNF186, PQLC2, RPS14P3, CAPZB, AKR7A2, ALDH4A1) 0.409924330427262 50 0.0608019501566943 0.986759691014054 1939 0.434635986923964 3 2 1 -6.78779779910601 LTS-031 chr1 20305049 20305152 104 * PLA2G2A NA 0 NA 0.551 1 NA NA NA NA NA LTS-031 chr1 20305153 23660169 3355017 * c(MIR3115, MIR4253, LOC100506801, MIR4684, CELA3A, HNRNPR, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, PLA2G2D, LINC00339, HSPG2, HTR1D, LINC01141, PLA2G2C, SH2D5, LDLRAD2, HP1BP3, PLA2G2A, PLA2G5, WNT4, CAMK2N1, KIF17, RAP1GAP, PLA2G2F, PINK1, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, USP48, NBPF3, EIF4G3, CDA, ZBTB40, CDC42) 0.386698125806637 108 0.0766394794677268 0.85096406666413 4139 0.395029559099245 2 2 0 -6.77439073519097 LTS-031 chr1 23660170 23664328 4159 * HNRNPR NA 0 NA 1.938 1 NA NA NA NA NA LTS-031 chr1 23664329 24164785 500457 * c(TCEB3-AS1, HNRNPR, LYPLA2, ZNF436-AS1, E2F2, GALE, MDS2, HMGCL, ID3, ASAP3, PITHD1, RPL11, TCEA3, TCEB3, ZNF436) 0.402511647960796 12 0.0521404716883036 0.976747845687434 967 0.417352448513749 4 3 1 -6.77339578645077 LTS-031 chr1 24164786 24171570 6785 * HMGCL NA 0 NA 0.745 1 NA NA NA NA NA LTS-031 chr1 24171571 25599056 1427486 * c(MIR378F, RCAN3AS, SRRM1, RCAN3, CNR2, MYOM3, IFNLR1, FUCA1, CLIC4, SYF2, LOC284632, NCMAP, PNRC2, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.365875656198306 30 0.0864440620405414 0.771843803722439 1750 0.374159639502607 2 2 0 -6.82843823031609 LTS-031 chr1 25599057 25599066 10 * c(RSRP1, RHD) NA 0 NA 1.225 1 NA NA NA NA NA LTS-031 chr1 25599067 25656954 57888 * c(RSRP1, RHD) NA 0 NA 1.63542088330283 85 0.948444410453184 9 NA NA -5.76442805998947 LTS-031 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.72 1 NA NA NA NA NA LTS-031 chr1 25666924 26624079 957156 * c(MIR3917, CNKSR1, PDIK1L, PAQR7, EXTL1, TMEM50A, LDLRAP1, CATSPER4, STMN1, PAFAH2, ZNF593, TMEM57, MTFR1L, MAN1C1, SELENON, RHCE, LOC646471, CEP85, SLC30A2, AUNIP, FAM110D, SH3BGRL3, TRIM63, UBXN11) 0.410762427240374 18 0.0438852112300474 0.870680199385547 1655 0.395882957246451 1 1 0 -6.8128121940129 LTS-031 chr1 26624080 26624453 374 * UBXN11 NA 0 NA 0.64 1 NA NA NA NA NA LTS-031 chr1 26624454 26755020 130567 * c(CD52, ZNF683, AIM1L, LIN28A, UBXN11) 0.327163184433054 3 0.0150443787951957 0.616588008984325 318 0.266538601466768 3 3 0 -6.96931015454569 LTS-031 chr1 26755021 26755283 263 * LIN28A NA 0 NA 1.263 1 NA NA NA NA NA LTS-031 chr1 26755284 31742390 4987107 * c(MATN1-AS1, MIR1976, MIR4420, PTPRU, WASF2, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, FAM76A, EPB41, EYA3, FGR, DNAJC8, WDTC1, STX12, IFI6, RNU11, AHDC1, SMPDL3B, SFN, GPR3, HMGN2, TRNP1, CD164L2, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, GPN2, MED18, TRNAU1AP, PPP1R8, XKR8, PIGV, PTAFR, RPA2, RPS6KA1, GPATCH3, SRSF4, ACTG1P20, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, NA NA NA NA NA NA NA NA NA LTS-031 SNORD99, SNORD103A, LAPTM5, NKAIN1, LIN28A, DHDDS, ARID1A, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, SYTL1, SNHG12, FCN3, MAP3K6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.406840056688139 62 0.0537889307810048 0.855508576125831 4954 0.40926532797347 2 1 1 -6.9449318391107 LTS-031 NA NA NA NA LTS-031 chr1 31742391 32677509 935119 * c(MIR4254, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, FABP3, KPNA6, LINC01226, HCRTR1, SERINC2, ZCCHC17, TMEM39B, PEF1, IQCC, ADGRB2, TINAGL1, CCDC28B, PTP4A2, SPOCD1, SNRNP40) 0.442088988936393 26 0.0426272754862965 1.17959569831693 1744 0.50805692991183 4 2 2 -6.746860808807 LTS-031 chr1 32677510 33791517 1114008 * c(FAM229A, AZIN2, TMEM54, RNF19B, A3GALT2, DCDC2B, ZNF362, PHC2, AK2, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TRIM62, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, SYNC, TSSK3, FAM167B, YARS, EIF3I) 0.396260583990188 27 0.0832429937676199 0.98409595141516 1819 0.448211791168028 4 3 1 -6.77594881123433 LTS-031 chr1 33791518 33841254 49737 * c(MIR3605, PHC2) 0.469916416896428 3 0.0386566078870526 1.68174059787563 96 0.491611761021399 10 5 5 -7.10212766335073 LTS-031 chr1 33841255 33944742 103488 * c(PHC2, ZSCAN20) NA 0 NA 0.652 1 NA NA NA NA NA LTS-031 chr1 33944743 35581295 1636553 * c(TMEM35B, SMIM12, CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, DLGAP3, LOC653160, ZSCAN20, ZMYM1, C1orf94, ZMYM6) 0.419804630757454 24 0.105784851385294 0.877359700832902 1319 0.413498515339152 2 1 1 -6.75207704735624 LTS-031 chr1 35581296 35581299 4 * ZMYM1 NA 0 NA 1.231 1 NA NA NA NA NA LTS-031 chr1 35581300 36941254 1359955 * c(OSCP1, C1orf216, COL8A2, CSF3R, AGO3, AGO4, NCDN, AGO1, TRAPPC3, TEKT2, TFAP2E, ADPRHL2, EVA1B, MAP7D1, PSMB2, CLSPN, SFPQ, MRPS15, SH3D21, ZMYM1, KIAA0319L, STK40, LSM10, ZMYM4, THRAP3) 0.435777077505569 20 0.040713892624405 1.01009540879688 2345 0.495206556599619 3 2 1 -6.75432567025547 LTS-031 chr1 36941255 36945023 3769 * CSF3R NA 0 NA 0.39 1 NA NA NA NA NA LTS-031 chr1 36945024 37319408 374385 * c(CSF3R, GRIK3) NA 0 NA 0.627003746411096 189 0.237703006610288 0 NA NA -5.76848885365672 LTS-031 chr1 37319409 37324702 5294 * GRIK3 NA 0 NA 1.078 1 NA NA NA NA NA LTS-031 chr1 37324703 47184728 9860026 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR4255, MIR3659, SLFNL1-AS1, MKNK1-AS1, GJA9-MYCBP, MIR5581, MIR5584, TSPAN1, ZMPSTE24, AKR1A1, TESK2, PPIE, PPIH, CAP1, LRRC41, SF3A3, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, TMCO2, ZNF684, C1orf122, KLF17, TMEM125, COL9A2, KNCN, MOB3C, MANEAL, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FAAH, NA NA NA NA NA NA NA NA NA LTS-031 FHL3, FOXJ3, SCMH1, MAST2, SZT2, MACF1, MMACHC, MYCBP, HEYL, BEST4, SNORD55, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, C1orf228, ZFP69, TCTEX1D4, BMP8A, INPP5B, IPP, SVBP, TEX38, NSUN4, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MUTYH, MYCL, NASP, NDUFS5, NFYC, YBX1, PRDX1, ZNF691, UTP11, TMEM69, HPCAL4, ATP6V0B, LURAP1, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 RNF220, PPT1, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, RLF, GPBP1L1, RPS8, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, ATPAF1, MEAF6, EXO5, ELOVL1, ST3GAL3, SLC2A1, ZFP69B, SLC6A9, BMP8B, SNORA55, TIE1, LINC01137, PPIEL, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, YRDC, PPCS, SNIP1, ZC3H12A, HYI, ZMYND12, RAD54L, NT5C1A, HPDL, MFSD2A, PIK3R3, MKNK1, PTCH2, B4GALT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 PABPC4, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20) 0.439589430009493 197 0.0765327957698105 0.990226124745882 12649 0.451151675565306 3 2 1 -6.74595816329585 LTS-031 NA NA NA NA LTS-031 chr1 47184729 47264667 79939 * EFCAB14 NA 0 NA 0.701 1 NA NA NA NA NA LTS-031 chr1 47264668 47615318 350651 * c(CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22) NA 0 NA 0.629100803644668 392 0.309306784074759 0 NA NA -5.766221259634 LTS-031 chr1 47615319 61331114 13715796 * c(LINC01135, MIR761, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4711, LINC00853, PDZK1IP1, CDKN2C, FAF1, KTI12, MYSM1, OSBPL9, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, GLIS1, CYP2J2, DAB1, SLC25A3P1, LEXM, DHCR24, DIO1, ELAVL4, C1orf168, TMEM61, CDCP2, SLC5A9, CC2D1B, EPS15, TTC39A, FOXE3, FOXD2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, ACOT11, RNF11, C1orf185, GPX7, FAM151A, FAM159A, NA NA NA NA NA NA NA NA NA LTS-031 JUN, MROH7, TRABD2B, LDLRAD1, SKINT1L, TACSTD2, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, MRPL37, HOOK1, HSPB11, CMPK1, YIPF1, SPATA6, C1orf123, TTC22, ECHDC2, FGGY, PRKAA2, NDC1, RAB3B, CYB5RL, SCP2, DMRTB1, DMRTA2, STIL, SLC1A7, COA7, TAL1, TTC4, HSD52, C8A, C8B, LRP8, BSND, BEND5, ZYG11B, FOXD2-AS1, AGBL4, PRPF38A, PLPP3, BTF3L4, ZFYVE9, TMEM59) 0.428370570712737 136 0.0877192292534988 0.970428528722008 8504 0.468699557654021 3 2 1 -6.74593249253185 LTS-031 NA NA NA NA LTS-031 chr1 61331115 61543140 212026 * NFIA NA 0 NA 2.507 1 NA NA NA NA NA LTS-031 chr1 61543141 61928329 385189 * NFIA 0.447949923437281 2 0.0586898628384835 1.54060929633422 230 0.644242642325856 8 4 4 -6.74809039031613 LTS-031 chr1 61928330 66096234 4167905 * c(MIR3671, MIR4794, PATJ, UBE2U, KANK4, LINC00466, AK4, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, LEPR, MIR101-1, MGC34796, NFIA, ROR1, PGM1, L1TD1, LEPROT, RAVER2, CACHD1, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.400772350230773 39 0.0899252576132819 0.93817000506727 2550 0.477953126004815 3 2 1 -6.81893174425609 LTS-031 chr1 66096235 66098826 2592 * LEPR NA 0 NA 0.598 1 NA NA NA NA NA LTS-031 chr1 66098827 67371086 1272260 * c(INSL5, MIR3117, TCTEX1D1, LEPR, PDE4B, WDR78, SGIP1) 0.4275009889229 13 0.0746530436290238 0.784081605745168 748 0.337987611991839 1 1 0 -6.7495732385701 LTS-031 chr1 67371087 67384786 13700 * WDR78 NA 0 NA 2.986 1 NA NA NA NA NA LTS-031 chr1 67384787 67519721 134935 * c(SLC35D1, MIER1, WDR78) 0.459882991392515 17 0.0354616611534867 1.08651195262888 388 0.533316212582578 4 2 2 -6.94064813622962 LTS-031 chr1 67519722 67519736 15 * SLC35D1 NA 0 NA 0.812 1 NA NA NA NA NA LTS-031 chr1 67519737 67878853 359117 * c(IL23R, SLC35D1, SERBP1, IL12RB2, C1orf141) 0.431318762205824 18 0.058294608995245 0.715638906460254 385 0.415897036790404 0 0 0 -6.75513129117589 LTS-031 chr1 67878854 67878911 58 * SERBP1 NA 0 NA 0.973 1 NA NA NA NA NA LTS-031 chr1 67878912 68698208 819297 * c(GNG12-AS1, MIR1262, GADD45A, SERBP1, GNG12, WLS, DIRAS3) 0.476578923188874 4 0.0271093464817333 1.12055448475069 333 0.530313415127363 4 2 2 -7.72420741678674 LTS-031 chr1 68698209 68894530 196322 * c(RPE65, WLS) NA 0 NA 0.608 1 NA NA NA NA NA LTS-031 chr1 68894531 70588681 1694151 * c(PIN1P1, DEPDC1, LRRC7, RPE65) 0.357 1 NA 0.707009134887221 477 0.33321192127168 1 1 0 -5.81385388880044 LTS-031 chr1 70588682 70833337 244656 * c(HHLA3, LRRC40, LRRC7, ANKRD13C, SRSF11) NA 0 NA 1.01406185653566 355 0.42698039064876 3 NA NA -5.76492966413557 LTS-031 chr1 70833338 70876979 43642 * c(HHLA3, CTH) NA 0 NA 0.756 1 NA NA NA NA NA LTS-031 chr1 70876980 75702735 4825756 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, SLC44A5, NEGR1, MIR186, LHX8, TNNI3K, PTGER3, FPGT, ZRANB2) 0.421234949011857 36 0.0900522423330277 0.789780554090117 1591 0.431277043280294 1 1 0 -6.75518244600133 LTS-031 chr1 75702736 94476475 18773740 * c(MIR760, LOC100129046, CCDC18-AS1, PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, GLMN, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, GBP6, HFM1, DR1, SLC44A5, CLCA4, MTF2, USP33, ADGRL2, KIAA1107, LRRC8B, LPAR3, DDAH1, ABCA4, EPHX4, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, GBP1, GBP2, GBP3, GFI1, SNORA66, SNORD45B, SNORD45A, GCLM, GNG5, ZNF326, BTBD8, GTF2B, NA NA NA NA NA NA NA NA NA LTS-031 DNTTIP2, LINC01140, ACADM, CCDC18, BARHL2, CYR61, MIGA1, GBP7, C1orf146, FAM69A, UOX, GBP1P1, FLJ27354, LINC01555, MSH4, GEMIN8P4, RBMXL1, TMED5, SH3GLB1, ZNHIT6, GIPC2, FNBP1L, LRRC8D, MCOLN3, PRKACB, PKN2, KYAT3, PTGFR, ODF2L, DNASE2B, RABGGTB, SNORD21, RPL5, ADGRL4, LOC646626, BRDT, SNORD45C, TGFBR3, LOC729930, EVI5, TTLL7, RPAP2, RPF1, ST6GALNAC5, CDC7, BCAR3, SYDE2, ZNF644, LRRC8C, LMO4, FUBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.436158836012281 151 0.0685031959744919 0.911072596909547 9218 0.473114829198799 2 1 1 -6.81535101347289 LTS-031 NA NA NA NA LTS-031 chr1 94476476 94476828 353 * ABCA4 NA 0 NA 1.184 1 NA NA NA NA NA LTS-031 chr1 94476829 95448440 971612 * c(CNN3, SLC44A3, ALG14, F3, ABCA4, ABCD3, LOC729970, ARHGAP29) 0.443192491922025 13 0.0341992652492673 1.20781195326975 775 0.499572338108891 4 2 2 -6.76298206799773 LTS-031 chr1 95448441 109154919 13706479 * c(LINC01349, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, OLFM3, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, ALG14, EXTL2, NTNG1, SLC35A3, RWDD3, AMY2A, AMY2B, FAM102B, SLC25A24, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, DPH5, GPR88, TRMT13, PALMD, PRMT6, RNPC3, PTBP2, MFSD14A, ACTG1P4, NBPF6, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, NA NA NA NA NA NA NA NA NA LTS-031 PLPPR4) 0.437628091510024 66 0.0713966839579156 0.836829930864026 3534 0.435275556760605 2 1 1 -6.81781870856865 LTS-031 NA NA NA NA LTS-031 chr1 109154920 109158865 3946 * FAM102B NA 0 NA 2.187 1 NA NA NA NA NA LTS-031 chr1 109158866 110924437 1765572 * c(AHCYL1, HENMT1, ATXN7L2, C1orf194, CSF1, FNDC7, UBL4B, CELSR2, WDR47, CLCC1, AKNAD1, ALX3, AMPD2, GNAI3, GNAT2, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, MYBPHL, KCNC4, SLC6A17, MIR197, LOC440600, PRPF38B, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, RBM15, SCARNA2, STXBP3, TAF13, EPS8L3, GPR61, PSRC1, STRIP1, SLC16A4) 0.452656660611389 41 0.0376130166882456 0.963431413651772 3832 0.50878571676271 2 1 1 -6.8527789660788 LTS-031 chr1 110924438 110925411 974 * SLC16A4 NA 0 NA 0.719 1 NA NA NA NA NA LTS-031 chr1 110925412 111690641 765230 * c(LAMTOR5-AS1, CEPT1, LAMTOR5, DRAM2, KCNA2, KCNA3, KCNA10, LRIF1, CYMP, PROK1, SLC16A4, CD53) 0.468380158483159 6 0.0395798770420863 0.730866589670639 481 0.350394528764774 0 0 0 -7.10706565772434 LTS-031 chr1 111690642 111701963 11322 * CEPT1 NA 0 NA 1.069 1 NA NA NA NA NA LTS-031 chr1 111701964 116386243 4684280 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, BCAS2, CEPT1, AP4B1, PHTF1, CHI3L2, DDX20, PIFO, C1orf162, ADORA3, SYT6, CHIAP2, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, AMPD1, CHIA, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, PGCP1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, CTTNBP2NL, FAM212B, OLFML3, RAP1A, LOC643355, LOC643441, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, NA NA NA NA NA NA NA NA NA LTS-031 DENND2D, SIKE1, VANGL1, CAPZA1, CASQ2, LRIG2) 0.432977630311871 119 0.0791682126651595 0.969736008785392 4819 0.478655786788455 3 2 1 -6.73961842389232 LTS-031 NA NA NA NA LTS-031 chr1 116386244 117061384 675141 * c(MAB21L3, ATP1A1, SLC22A15, ATP1A1-AS1, CD58) 0.278 1 NA 0.916480763422973 409 0.433457020506085 2 2 0 -5.76905680529291 LTS-031 chr1 117061385 117156585 95201 * c(IGSF3, CD58) 0.27585341104123 15 0.0489954322457959 1.0291443813143 199 0.349130886080637 5 5 0 -6.76926466001912 LTS-031 chr1 117156586 117554421 397836 * c(MIR320B1, IGSF3, PTGFRN, CD2, CD101) 0.449 1 NA 0.911189709801235 267 0.742044825612414 2 2 0 -5.76512646070076 LTS-031 chr1 117554422 118170988 616567 * c(MIR942, MAN1A2, FAM46C, VTCN1, TRIM45, TTF2, CD101) 0.444185813819942 5 0.0337164648206184 0.936606256641445 736 0.528583209139326 2 1 1 -6.75524905785345 LTS-031 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.547 1 NA NA NA NA NA LTS-031 chr1 118319311 118320996 1686 * character(0) NA 0 NA 0.352995266675516 40 0.209787314458459 0 NA NA -5.7728492981306 LTS-031 chr1 118320997 120460418 2139422 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.441783046913074 40 0.0402656562956954 0.835741341832876 1399 0.335977489526883 2 1 1 -6.76037580995812 LTS-031 chr1 120460419 120461060 642 * NOTCH2 NA 0 NA 1.277 1 NA NA NA NA NA LTS-031 chr1 120461061 120471857 10797 * NOTCH2 0.453 1 NA 1.246172569957 69 0.289664691356376 5 5 0 -5.76445620807885 LTS-031 chr1 120471858 120529742 57885 * NOTCH2 NA 0 NA 1.11166905770833 109 0.383830274442573 4 NA NA -5.76442679689366 LTS-031 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.339 1 NA NA NA NA NA LTS-031 chr1 120534071 120535421 1351 * NOTCH2 0.315 1 NA 0.673873600539849 7 0.29792440715885 0 0 0 -5.76442477157639 LTS-031 chr1 120535422 120612163 76742 * NOTCH2 0.30994130400693 15 0.0530612404500238 0.655380702721624 198 1.05165014828094 7 6 1 -6.76914605234303 LTS-031 chr1 120612164 121313547 701384 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, EMBP1, FAM72B) NA 0 NA 0.606433426292088 105 0.459756298918899 0 NA NA -5.7729132028542 LTS-031 chr1 143912360 144013853 101494 * FAM72D 0.31 1 NA 0.566211553478301 5 0.559344258931832 0 0 0 -5.76790438718859 LTS-031 chr1 144013854 144901731 887878 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.408934944163633 22 0.0942264473310088 0.639206933141399 255 0.331525567885034 0 0 0 -6.79313315221936 LTS-031 chr1 144901732 145136562 234831 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.346014697397047 53 0.0911229571713817 0.868204079700948 341 0.442726539101788 3 3 0 -6.77035477686324 LTS-031 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.163 1 NA NA NA NA NA LTS-031 chr1 145136925 145285310 148386 * c(NBPF10, NBPF20, NOTCH2NL) 0.333340858629221 12 0.0869034207925934 0.666015002731581 244 0.992960247522845 3 3 0 -6.7499905737554 LTS-031 chr1 145285311 145416559 131249 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 0.597464002186343 61 0.327943243623422 0 NA NA -5.76912787039445 LTS-031 chr1 145416560 145416562 3 * c(NBPF10, NBPF20, HFE2) NA 0 NA 0.844 1 NA NA NA NA NA LTS-031 chr1 145416563 145509331 92769 * c(NBPF10, NBPF20, TXNIP, LIX1L, HFE2, ANKRD34A, POLR3GL, RBM8A) NA 0 NA 1.16289418376882 308 0.452017534148995 5 NA NA -5.76495526906093 LTS-031 chr1 145509332 145511249 1918 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.577430215633071 53 0.290895808758008 0 NA NA -5.76458803824386 LTS-031 chr1 145511250 145511353 104 * c(NBPF10, NBPF20, RBM8A) NA 0 NA 0.903 1 NA NA NA NA NA LTS-031 chr1 145511354 145535921 24568 * c(NBPF10, NBPF20, ITGA10, PEX11B, RBM8A) 0.425 1 NA 1.00388324825777 171 0.401891230127149 3 3 0 -5.76443153837232 LTS-031 chr1 145535922 145706869 170948 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115, ITGA10) 0.453797953471402 3 0.03772267222772 1.00672188301535 618 0.472091992181439 4 2 2 -6.83191907834496 LTS-031 chr1 145706870 145746977 40108 * c(NBPF10, NBPF20, CD160, PDZK1) NA 0 NA 0.555 1 NA NA NA NA NA LTS-031 chr1 145746978 146510032 763055 * c(NBPF10, NBPF20, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.431 1 NA 0.576453758462246 125 0.310846846014914 0 0 0 -5.82760559121802 LTS-031 chr1 146510033 147806796 1296764 * c(LINC00624, MIR5087, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.420050770293457 22 0.0516180821701698 1.05549760237245 735 0.488218709044551 3 2 1 -6.76254880961442 LTS-031 chr1 147806797 148193315 386519 * c(NBPF14, LINC01138) NA 0 NA 0.501 1 NA NA NA NA NA LTS-031 chr1 148193316 148902310 708995 * c(NBPF14, NBPF15, PPIAL4D, NA, PPIAL4F, PPIAL4E) 0.429 1 NA 0.389613656641636 64 0.273668667703374 0 0 0 -6.95728282665 LTS-031 chr1 148902311 149038810 136500 * LOC645166 NA 0 NA 0.111 1 NA NA NA NA NA LTS-031 chr1 149038811 149676575 637765 * c(FCGR1CP, LOC388692, LINC00869) NA 0 NA 0.210957241402977 43 0.265423414843692 0 NA NA -9.32482010611116 LTS-031 chr1 149676576 149760085 83510 * c(FCGR1A, HIST2H2BF) NA 0 NA 0.732 1 NA NA NA NA NA LTS-031 chr1 149760086 150596531 836446 * c(MIR4257, FALEC, SF3B4, MTMR11, VPS45, CIART, ECM1, ENSA, FCGR1A, RPRD2, CA14, HIST2H2AB, HIST2H2BC, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, MRPS21, ADAMTSL4, OTUD7B, HIST2H3D, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PRPF3, SV2A) 0.428962796186202 32 0.0540058240586889 1.31503799483274 1868 0.635772567188624 5 3 2 -6.74451371257164 LTS-031 chr1 150596532 150596650 119 * ENSA NA 0 NA 1.055 1 NA NA NA NA NA LTS-031 chr1 150596651 152009532 1412882 * c(LOC100132111, C2CD4D, TNFAIP8L2-SCNM1, SEMA6C, MLLT11, TDRKH, CELF3, THEM4, GABPB2, BNIPL, CTSK, CTSS, ENSA, POGZ, RIIAD1, THEM5, TMOD4, CERS2, LINGO4, LYSMD1, ARNT, OAZ3, PI4KB, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, MIR554, VPS72, TUFT1, SCNM1, TNFAIP8L2, SNX27, PIP5K1A, HORMAD1, ANXA9, SELENBP1, SETDB1) 0.407217051544261 22 0.0449292132040413 1.1606666642458 3565 0.60181652467243 6 4 2 -6.77731199089761 LTS-031 chr1 152009533 152056513 46981 * character(0) NA 0 NA 0.82 1 NA NA NA NA NA LTS-031 chr1 152056514 152323121 266608 * c(TCHHL1, RPTN, FLG, HRNR, FLG2, TCHH) 0.451082785016678 2 0.0473761543394987 0.768522939819786 518 0.256805843596428 2 1 1 -6.81448746508792 LTS-031 chr1 152323122 152328929 5808 * FLG2 NA 0 NA 0.432017651491279 96 0.111762969732863 0 NA NA -5.80971238596547 LTS-031 chr1 152328930 153507281 1178352 * c(C1orf68, PGLYRP3, LELP1, SPRR4, LCE4A, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.420685765691081 36 0.0538579186083662 0.806454705027262 1019 0.394035631280337 1 1 0 -6.75025674066467 LTS-031 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.36 1 NA NA NA NA NA LTS-031 chr1 153507608 153941471 433864 * c(SLC27A3, S100A16, CREB3L4, CRTC2, SNAPIN, CHTOP, SLC39A1, ILF2, NPR1, S100A14, GATAD2B, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, INTS3, DENND4B) 0.43690711442989 2 0.00494974746830584 1.31255914748219 1310 0.605173920631088 7 4 3 -6.77117847196687 LTS-031 chr1 153941472 154125388 183917 * c(JTB, CREB3L4, RAB13, RPS27, NUP210L) 0.446354344057924 2 0.0304055915910215 0.905532550686373 347 0.414464717616457 2 1 1 -6.77197075230578 LTS-031 chr1 154125389 154127356 1968 * NUP210L NA 0 NA 1.152 1 NA NA NA NA NA LTS-031 chr1 154127357 155257620 1130264 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, C1orf43, GBA, GBAP1, IL6R, KCNN3, C1orf189, MTX1, MUC1, ZBTB7B, DPM3, UBE2Q1, LENEP, SLC50A1, ATP8B2, PBXIP1, HCN3, SHC1, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L) 0.429197032073855 31 0.0562733726829864 1.26253353567065 3466 0.602613708677632 5 3 2 -6.73886502497911 LTS-031 chr1 155257621 155583272 325652 * c(FDPS, RUSC1, RUSC1-AS1, PKLR, MSTO1, ASH1L, HCN3, ASH1L-AS1, POU5F1P4, MIR555) NA 0 NA 1.07322823501526 679 0.498460438405023 4 NA NA -5.76497423764648 LTS-031 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.755 1 NA NA NA NA NA LTS-031 chr1 155583288 155638590 55303 * c(MSTO1, YY1AP1) NA 0 NA 0.620581937261445 105 0.256037245459076 0 NA NA -5.76531720916494 LTS-031 chr1 155638591 155640226 1636 * YY1AP1 NA 0 NA 1.335 1 NA NA NA NA NA LTS-031 chr1 155640227 155708463 68237 * c(YY1AP1, DAP3) NA 0 NA 1.13042477484201 133 0.836610296642585 4 NA NA -5.76444709888962 LTS-031 chr1 155708464 155716482 8019 * c(MSTO2P, YY1AP1, DAP3) NA 0 NA 0.274 1 NA NA NA NA NA LTS-031 chr1 155716483 155723115 6633 * c(MSTO2P, GON4L, YY1AP1) NA 0 NA 0.600646839723663 90 0.396720063758772 0 NA NA -5.76455229719178 LTS-031 chr1 155723116 156005142 282027 * c(KIAA0907, SYT11, RXFP4, GON4L, YY1AP1, UBQLN4, RIT1, SSR2, SCARNA4, SNORA80E, ARHGEF2) 0 1 NA 1.10872746004691 754 0.482897712065496 4 4 0 -5.76443418989182 LTS-031 chr1 156005143 156005153 11 * UBQLN4 NA 0 NA 0.398 1 NA NA NA NA NA LTS-031 chr1 156005154 156006977 1824 * UBQLN4 NA 0 NA 0.492461763507007 43 0.169855250732941 0 NA NA -5.76724631449523 LTS-031 chr1 156006978 156011372 4395 * UBQLN4 NA 0 NA 1.869 1 NA NA NA NA NA LTS-031 chr1 156011373 156209334 197962 * c(PMF1-BGLAP, PMF1, LAMTOR2, LMNA, UBQLN4, RAB25, SEMA4A, MEX3A, SLC25A44) 0.435156004300765 7 0.030181198814904 1.4178720777322 479 0.661391001143527 7 4 3 -6.73336239398167 LTS-031 chr1 156209335 157493722 1284388 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, SMG5, HDGF, CYCSP52, INSRR, PEAR1, VHLL, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GPATCH4, PRCC, RHBG, HAPLN2, BGLAP, BCAN, CCT3, MIR765, MRPL24, PAQR6, ISG20L2, FCRL5, TMEM79, SH2D2A, ARHGEF11) 0.444346682556683 52 0.0388255321367442 1.14094153532076 2822 0.517725484066196 4 2 2 -6.74927439625944 LTS-031 chr1 157493723 157963580 469858 * c(FCRL1, FCRL3, KIRREL, FCRL2, FCRL5, FCRL4, CD5L) 0.410845816206464 12 0.0438332757229717 0.894478938167275 623 0.435776800363944 1 1 0 -6.7854159276358 LTS-031 chr1 157963581 158045861 82281 * KIRREL NA 0 NA 1.58 1 NA NA NA NA NA LTS-031 chr1 158045862 158259712 213851 * c(KIRREL, LOC646268, CD1A, CD1C, CD1D) 0.410381231026289 11 0.0687029177625733 1.17796988948126 316 0.484027107938812 6 4 2 -6.74122674672124 LTS-031 chr1 158259713 158259796 84 * CD1C NA 0 NA 0.67 1 NA NA NA NA NA LTS-031 chr1 158259797 159805391 1545595 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, CD1B, CD1C, CD1E, AIM2) 0.399122157438565 52 0.07898802580272 0.797325485659446 1575 0.461899095046265 1 1 0 -6.77482761950961 LTS-031 chr1 159805392 160000048 194657 * c(LINC01133, CFAP45, C1orf204, VSIG8, SLAMF8, IGSF9, TAGLN2, SLAMF9, PIGM) 0.431452902909526 12 0.0369221129439043 1.2946128201018 457 0.576301670080205 5 3 2 -6.73593455799224 LTS-031 chr1 160000049 160000162 114 * PIGM NA 0 NA 0.677 1 NA NA NA NA NA LTS-031 chr1 160000163 161088056 1087894 * c(TSTD1, SLAMF6, KLHDC9, COPA, ITLN2, NCSTN, ARHGAP30, KCNJ9, KCNJ10, LY9, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, CD244, PFDN2, ITLN1, VANGL2, SLAMF7, PEX19, SLAMF1, USF1, NECTIN4, CASQ1, PEA15, CD84, PIGM, IGSF8, CD48) 0.42387460454606 60 0.0506279522400679 1.02789237982404 2718 0.843350736751912 3 2 1 -6.73916147578388 LTS-031 chr1 161088057 161088246 190 * NIT1 NA 0 NA 1.309 1 NA NA NA NA NA LTS-031 chr1 161088247 161336364 248118 * c(MIR5187, FCER1G, CFAP126, USP21, APOA2, MPZ, NDUFS2, NIT1, UFC1, PPOX, SDHC, PCP4L1, TOMM40L, B4GALT3, DEDD, ADAMTS4, NR1I3) 0.422066543893067 11 0.0547938284514199 1.38891179690372 884 0.634828299209724 8 5 3 -6.74008181094526 LTS-031 chr1 161336365 161337583 1219 * CFAP126 NA 0 NA 0.584 1 NA NA NA NA NA LTS-031 chr1 161337584 161559508 221925 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, FCGR2C) 0.339405656165376 10 0.0826175257167361 0.711103559137171 219 0.288637312808432 2 2 0 -6.87746734329544 LTS-031 chr1 161559509 161576267 16759 * c(HSPA7, FCGR2C) 0.409142278773897 2 0.0494974746830583 0.425210799425417 90 0.571331151364382 1 1 0 -6.76067349225543 LTS-031 chr1 161576268 169455697 7879430 * c(MIR921, MIR3658, LOC100505795, LOC100505918, MIR4654, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, DPT, FCGR2B, FCGR3B, ALDH9A1, ATF6, GPR161, MPC2, OLFML2B, TIPRL, C1orf111, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, ATP1B1, DDR2, PBX1, HSD17B7, TMCO1, POU2F1, ADCY10, DCAF6, POGK, CCDC181, RGS4, RXRG, XCL1, RPL31P11, UAP1, XCL2, NA NA NA NA NA NA NA NA NA LTS-031 MIR556, MIR557, UCK2, LINC00626, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, NOS1AP) 0.420464602426083 102 0.0730749881453844 1.01606340964288 4863 0.541965058356173 3 2 1 -6.75209170637067 LTS-031 NA NA NA NA LTS-031 chr1 169455698 169483431 27734 * F5 NA 0 NA 0.395 1 NA NA NA NA NA LTS-031 chr1 169483432 169762618 279187 * c(F5, C1orf112, SELE, SELL, SELP, METTL18) 0.453074851850793 13 0.0397295343219109 0.74306665110529 451 0.278509598987644 0 0 0 -6.85120514549209 LTS-031 chr1 169762619 183093926 13331308 * c(GM140, MIR1295A, RASAL2-AS1, MIR3119-1, MIR3120, MIR3119-2, MIR3121, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, DNM3OS, MIR1295B, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, RC3H1, METTL11B, TDRD5, TOR1AIP2, DHX9, FLJ23867, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, DNM3, TOR1AIP1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, ABL2, CACYBP, KLHL20, GLUL, SLC9C2, LOC284648, LINC01142, MR1, ANKRD45, RGSL1, FASLG, NA NA NA NA NA NA NA NA NA LTS-031 FMO6P, LINC00272, LAMC1, C1orf220, ASTN1, SERPINC1, MYOC, IER5, SUCO, METTL13, PIGC, PRRX1, RALGPS2, DARS2, C1orf112, SCYL3, MIR488, QSOX1, KIAA1614, BRINP2, RGS16, RNASEL, GAS5, PAPPA2, SNORD74, TNN, MRPS14, TOR3A, RFWD2, SOAT1, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TOP1P1, TNFSF4, LOC730102, LOC730159, CACNA1E, NPHS2, MROH9, NPL, SHCBP1L, TEX35, ACBD6, ZBTB37, RGS8, VAMP4, SEC16B, LHX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 TNFSF18, ANGPTL1, CENPL, XPR1, METTL18, GORAB, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.433872146026133 201 0.0619196638889408 0.930357463284067 10005 0.6243040879253 3 2 1 -6.81254670403314 LTS-031 NA NA NA NA LTS-031 chr1 183093927 184763348 1669422 * c(ARPC5, TSEN15, FAM129A, NMNAT2, COLGALT2, RGL1, SMG7-AS1, LAMC1, LAMC2, APOBEC4, NCF2, EDEM3, C1orf21, SMG7) 0.443444206073394 26 0.0515100587637614 1.07920269914932 1746 0.477459358905365 4 2 2 -6.7401816648562 LTS-031 chr1 184763349 196712765 11949417 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, PRG4, IVNS1ABP, CFHR4, OCLM, FAM129A, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, TRMT1L, HMCN1, B3GALT2) 0.415060246913295 28 0.0959622045859447 0.836647021435753 2873 0.388046637752375 2 1 1 -6.86274469665448 LTS-031 chr1 196712766 196714918 2153 * c(CFHR4, CFH) NA 0 NA 0.422 1 NA NA NA NA NA LTS-031 chr1 196714919 196965347 250429 * c(CFHR4, CFHR3, CFH, CFHR1, CFHR2, CFHR5) 0.423655783588797 19 0.0642609355382981 0.515476003949841 287 0.452149798589487 0 0 0 -6.8037040279453 LTS-031 chr1 196965348 196967304 1957 * CFHR5 NA 0 NA 1.316 1 NA NA NA NA NA LTS-031 chr1 196967305 201387020 4419716 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, KIF21B, CAMSAP2, CRB1, ZNF281, NR5A2, TMEM9, ASPM, GPR25, ZBTB41, C1orf53, LAD1, MIR181B1, MIR181A1, PKP1, LINC00862, C1orf106, LHX9, PTPRC, ASCL5, TNNI1, TNNT2, CACNA1S, CFHR5, DDX59, IGFN1, KIF14) 0.426239439920412 68 0.080860712245806 0.840847485484124 3510 0.432984293937625 2 1 1 -6.76935131116837 LTS-031 chr1 201387021 207627908 6240888 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CR2, CSRP1, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, PHLDA3, SLC41A1, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, LOC284581, UBE2T, IL19, IL10, RPS10P7, KISS1, TMEM81, NA, MDM4, C1orf186, MIR135B, MYBPH, NA NA NA NA NA NA NA NA NA LTS-031 MYOG, PPP1R12B, ATP2B4, IL20, ADIPOR1, CDK18, CYB5R1, PFKFB2, PIGR, PIK3C2B, LAX1, KLHDC8A, ETNK2, AVPR1B, YOD1, PRELP, IPO9, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, TNNI1, C4BPA, C4BPB, FAM72A, LINC01136, BTG2, C1orf116, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 SOX13, IKBKE, ZC3H11A, TMCC2) 0.43893038486904 176 0.0594824420235998 1.04833986847547 9551 0.46789678622725 4 2 2 -6.77591861751701 LTS-031 NA NA NA NA LTS-031 chr1 207627909 207639837 11929 * CR2 NA 0 NA 0.687 1 NA NA NA NA NA LTS-031 chr1 207639838 207912286 272449 * c(CR1, CR1L, CR2) 0.444735281463057 3 0.0280535202782111 0.672030672306299 314 0.291697259400592 0 0 0 -6.76327116361864 LTS-031 chr1 207912287 207925383 13097 * CD46 NA 0 NA 1.028 1 NA NA NA NA NA LTS-031 chr1 207925384 209962034 2036651 * c(MIR4260, C1orf74, LOC148696, HSD11B1, IRF6, LAMB3, MIR205, MIR29C, CD46, G0S2, PLXNA2, CAMK1G, MIR205HG, TRAF3IP3, CD34) 0.449167385924627 29 0.0397160487966729 1.26097611347509 1010 0.516791422286114 6 3 3 -6.78764175628738 LTS-031 chr1 209962035 209962963 929 * IRF6 NA 0 NA 0.646 1 NA NA NA NA NA LTS-031 chr1 209962964 210337648 374685 * c(SYT14, DIEXF, IRF6) 0.464202886954735 4 0.0354682957019364 0.735321975388707 279 0.42458145156698 0 0 0 -7.04819129323865 LTS-031 chr1 210337649 210404967 67319 * SERTAD4-AS1 NA 0 NA 1.191 1 NA NA NA NA NA LTS-031 chr1 210404968 210417499 12532 * c(SERTAD4, SERTAD4-AS1) 0.43351065664149 2 0.0586898628384834 1.52945943234684 84 0.878839610322189 5 3 2 -6.73354790903694 LTS-031 chr1 210417500 218458810 8041311 * c(MIR3122, LINC00538, LINC00210, CENPF, SPATA17, TATDN3, SPATA45, FAM71A, ESRRG, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, RD3, KCNH1, KCNK2, ATF3, NEK2, RRP15, KCTD3, DTL, GPATCH2, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, USH2A, SLC30A1, VASH2, LINC00467, ANGEL2, LPGAT1) 0.440412306780355 63 0.0712737774843374 0.867248465341115 3942 0.439156602159024 2 1 1 -6.73531743391363 LTS-031 chr1 218458811 218475568 16758 * RRP15 NA 0 NA 1.407 1 NA NA NA NA NA LTS-031 chr1 218475569 219706429 1230861 * c(LYPLAL1, RRP15, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.436950193605207 4 0.0856752589724711 1.18138517776405 366 0.729610673980648 5 3 2 -6.73527191380847 LTS-031 chr1 219706430 220091822 385393 * c(RNU5F-1, SLC30A10) 0.325424716649148 3 0.0868178169118145 0.622091575352043 81 0.413886579039043 3 3 0 -7.00981998266087 LTS-031 chr1 220091823 225591087 5499265 * c(MIR320B2, MIR4742, BPNT1, DUSP10, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, SLC30A10, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.434109855228947 67 0.056170018769744 0.935538211674448 3805 0.45123968580845 3 2 1 -6.7882398501022 LTS-031 chr1 225591088 228466653 2875566 * c(NA, MIR3620, MIR5008, LEFTY1, SNAP47, MRPL55, PARP1, SDE2, IBA57, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, LBR, ZNF847P, H3F3AP4, ENAH, PSEN2, COQ8A, GJC2, C1orf145, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, MIXL1, OBSCN, CDC42BPA, WNT3A, TMEM63A) 0.451166038759623 51 0.0434430075151431 1.07757622039009 3087 0.513379884040827 4 2 2 -6.78572893553349 LTS-031 chr1 228466654 237205967 8739314 * c(LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, SPHAR, CAPN9, LYST, CCSAP, C1orf131, EDARADD, HIST3H2BB, SLC35F3, B3GALNT2, EXOC8, LOC149373, RNF187, AGT, COG2, RBM34, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GNG4, IRF2BP2, FAM89A, KCNK1, COA6, LGALS8, TRIM67, MTR, NID1, TRIM17, ARID4B, EGLN1, MAP10, HEATR1, NUP133, ERO1B, DUSP5P1, NA NA NA NA NA NA NA NA NA LTS-031 SIPA1L2, ACTA1, RHOU, RAB4A, RYR2, SNRPD2P2, MT1HL1, ARV1, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, ACTN2, HIST3H2A, GGPS1, TOMM20, URB2) 0.43870224052682 219 0.0589386569243558 0.952463502149307 7428 0.446802499050165 3 2 1 -6.78764527012304 LTS-031 NA NA NA NA LTS-031 chr1 237205968 237430872 224905 * RYR2 NA 0 NA 0.522 1 NA NA NA NA NA LTS-031 chr1 237430873 241913034 4482162 * c(LOC100130331, MIR3123, CHML, CHRM3, WDR64, FH, OPN3, LINC01139, FMN2, ZP4, RGS7, RYR2, GREM2, RPS7P5, KMO) 0.423423849557607 33 0.0882019570489948 0.831800351689251 1687 0.384023266793962 2 1 1 -6.7970406644968 LTS-031 chr1 241913035 241920565 7531 * WDR64 NA 0 NA 0.516 1 NA NA NA NA NA LTS-031 chr1 241920566 243419568 1499003 * c(SDCCAG8, WDR64, PLD5, MAP1LC3C, LINC01347, EXO1, CEP170) 0.438266549862504 5 0.0447526535526107 0.673864163002563 473 0.409545811945713 0 0 0 -6.7416703840026 LTS-031 chr1 243419569 243433381 13813 * SDCCAG8 NA 0 NA 1.445 1 NA NA NA NA NA LTS-031 chr1 243433382 246943955 3510574 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, COX20, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, NA, HNRNPU, LOC339529, DESI2, SCCPDH, KIF26B, TFB2M, SMYD3, EFCAB2) 0.393622034238605 23 0.131464809159831 0.998021106129525 1714 0.599897232210702 3 2 1 -6.77519494510319 LTS-031 chr1 246943956 247002368 58413 * LINC01341 NA 0 NA 0.472 1 NA NA NA NA NA LTS-031 chr1 247002369 247003937 1569 * AHCTF1 NA 0 NA 0.416834382916556 40 0.221395799418146 0 NA NA -5.76812887827816 LTS-031 chr1 247003938 247131162 127225 * c(ZNF670-ZNF695, AHCTF1, ZNF695) 0.442682665301831 5 0.0375592864681959 1.16849387671908 250 0.704834739934457 4 2 2 -6.74042621786506 LTS-031 chr1 247131163 247148599 17437 * c(ZNF670-ZNF695, ZNF695) NA 0 NA 0.557 1 NA NA NA NA NA LTS-031 chr1 247148600 247740474 591875 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2C3, ZNF496, ZNF670) 0.432342841911303 21 0.0448162916805931 0.862163129443918 723 0.50643664440488 2 1 1 -6.74522426631894 LTS-031 chr1 247740475 248605303 864829 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3, OR2G2) 0.418380104454013 36 0.060224520397782 0.561446408470362 720 0.355459746571317 0 0 0 -6.88285055043122 LTS-031 chr1 248605304 248814024 208721 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.323145116294548 4 0.110902359457918 0.393585490829486 226 0.287849726206383 2 2 0 -7.67056911629168 LTS-031 chr1 248814025 248814052 28 * OR2T27 0.472 1 NA 1.38 1 NA NA NA NA NA LTS-031 chr1 248814053 249105158 291106 * c(OR14I1, OR2T27, LYPD8, SH3BP5L) 0.475425582634977 2 0.0212132034355964 0.72752133496278 48 0.472946400165048 0 0 0 -8.15212515498431 LTS-031 chr1 249105159 249214134 108976 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 0.969556612996527 287 0.502858296625137 3 NA NA -5.76450823111354 LTS-031 chr2 38824 39555 732 * FAM110C 0.268 1 NA 1.51726749853361 13 0.34765199590454 8 8 0 -5.7644125964911 LTS-031 chr2 39556 11268915 11229360 * c(SNORA80B, MIR4261, LINC01304, RNASEH1-AS1, LOC100506274, PDIA6, YWHAQ, CMPK2, MBOAT2, TMEM18, LINC01105, CYS1, MYT1L, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, C2orf48, KCNF1, RNF144A-AS1, LOC400940, LINC00487, ODC1, TRAPPC12, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, RRM2, FAM110C, SOX11, ADAM17, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, NA NA NA NA NA NA NA NA NA LTS-031 COLEC11, NOL10, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, RNF144A) 0.373813182090362 118 0.0803992770433578 0.971623594198885 4374 0.445149713392522 3 3 0 -6.93768511632834 LTS-031 NA NA NA NA LTS-031 chr2 11268916 12858298 1589383 * c(MIR4262, MIR4429, LINC00570, C2orf50, PQLC3, E2F6, LPIN1, NTSR2, FLJ33534, TRIB2, ROCK2, GREB1) 0.411850765496195 12 0.0464349496118446 1.17899822644579 977 0.570304866139712 6 4 2 -6.77706756316018 LTS-031 chr2 12858299 12858377 79 * TRIB2 NA 0 NA 0.888 1 NA NA NA NA NA LTS-031 chr2 12858378 20884398 8026021 * c(MIR3125, LOC100506474, NT5C1B-RDH14, MIR4757, MYCNOS, OSR1, TTC32, FAM84A, GDF7, DDX1, PUM2, TRIB2, MSGN1, GEN1, KCNS3, RHOB, LINC00954, MATN3, MYCN, NBAS, WDR35, RDH14, SDC1, HS1BP3, RAD51AP2, VSNL1, SMC6, FAM49A, NT5C1B, LAPTM4A) 0.405680738531516 40 0.0581871373133096 0.990215103645713 2520 0.453914002218463 3 2 1 -6.82300884595064 LTS-031 chr2 20884399 21366191 481793 * c(APOB, LDAH) 0.381309127674475 5 0.0361483056311081 0.649697731790166 596 0.317312607645231 2 2 0 -7.04472830439195 LTS-031 chr2 23729986 26420708 2690723 * c(MIR1301, RAB10, ADCY3, KLHL29, GAREM2, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, HADHA, PFN4, FAM228B, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3) 0.385770908723294 54 0.0531969167310055 1.0136656035708 2907 0.51215762595638 4 3 1 -6.79102234729719 LTS-031 chr2 26420709 26455127 34419 * HADHA 0.417 1 NA 0.896495545827452 36 0.299667524761736 2 2 0 -5.76454697966608 LTS-031 chr2 26455128 27275975 820848 * c(CENPA, CIB4, ADGRF3, MAPRE3, HADHA, HADHB, C2orf70, KCNK3, TMEM214, SLC35F6, DPYSL5, AGBL5, SELENOI, DRC1, OTOF) 0.416803180795026 32 0.0508637391436908 1.01066250966635 1442 0.406082789582066 3 2 1 -6.76538304573866 LTS-031 chr2 27275976 29294486 2018511 * c(OST4, BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, PREB, CGREF1, EMILIN1, GPN1, ZNF513, TCF23, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, SPDYA, FTH1P3, IFT172, GCKR, SNORD53, DNAJC5G, GTF3C2, NRBP1, PRR30, KHK, C2orf71, MPV17, ATRAID, PPM1G, PPP1CB, TRMT61B, TRIM54, AGBL5, RBKS, FNDC4, SNORD92, UCN, SLC30A3, CAD, CCDC121, C2orf16, ZNF512, ABHD1, SLC5A6, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.433430237250852 49 0.0496122464720153 1.14954080547103 4163 0.496311149955965 4 2 2 -6.7483115204888 LTS-031 chr2 29294487 39487920 10193434 * c(ARHGEF33, LOC100271832, LOC100288911, CEBPZOS, MIR4765, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, MYADML, RMDN2, CYP1B1, PRKD3, ALK, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, LINC00486, CYP1B1-AS1, EHD3, CDKL4, LOC375196, C2orf71, SULT6B1, LTBP1, CAPN14, MEMO1, CRIM1, YPEL5, VIT, HEATR5B, NDUFAF7, TTC27, SLC30A6, EIF2AK2, BIRC6, NLRC4, ATL2, SRSF7, SOS1, SPAST, SRD5A2, STRN, MIR558, MORN2, XDH, GALNT14, CLIP4, NA NA NA NA NA NA NA NA NA LTS-031 GEMIN6, LBH, YIPF4, DPY30, MAP4K3, DHX57, CAPN13, HNRNPLL, FEZ2) 0.423868663313827 114 0.0605584969091563 0.915748049752652 6125 0.450157652947118 2 1 1 -6.83083708899815 LTS-031 NA NA NA NA LTS-031 chr2 39487921 39492313 4393 * MAP4K3 NA 0 NA 1.228 1 NA NA NA NA NA LTS-031 chr2 39492314 44032719 4540406 * c(SLC8A1-AS1, LINC01126, PLEKHH2, TMEM178A, OXER1, KCNG3, HAAO, EML4, LOC388942, C2orf91, DYNC2LI1, MTA3, THADA, SLC8A1, ZFP36L2, LOC728730, C1GALT1C1L, THUMPD2, MAP4K3, PKDCC, COX7A2L) 0.444691091478461 64 0.068611583243347 1.06132433678096 1975 0.510970949992378 4 2 2 -6.75264244539412 LTS-031 chr2 44032720 44036767 4048 * DYNC2LI1 NA 0 NA 0.686 1 NA NA NA NA NA LTS-031 chr2 44036768 45171960 1135193 * c(MIR548AD, LRPPRC, DYNC2LI1, PPM1B, ABCG5, ABCG8, SIX3, SLC3A1, CAMKMT, PREPL) 0.416438585816084 15 0.06734262076448 0.836942835596777 924 0.702868978988568 1 1 0 -6.74558602897512 LTS-031 chr2 45171961 45172075 115 * SIX3 NA 0 NA 2.129 1 NA NA NA NA NA LTS-031 chr2 45172076 48872301 3700226 * c(LINC01119, SIX2, GTF2A1L, STON1, PPP1R21, EPAS1, RHOQ, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, LINC01121, EPCAM, MSH2, PIGF, SRBD1, PRKCE, KCNK12, TTC7A, SIX3, MIR559, FBXO11, CALM2, MCFD2, ATP6V1E2, CRIPT, SOCS5) 0.444758408554247 45 0.0555036808316222 1.032759110621 2121 0.843566096806788 4 2 2 -6.75350690591 LTS-031 chr2 48872302 48873622 1321 * c(GTF2A1L, STON1-GTF2A1L) NA 0 NA 0.656 1 NA NA NA NA NA LTS-031 chr2 48873623 51144432 2270810 * c(GTF2A1L, FSHR, STON1-GTF2A1L, LHCGR, NRXN1) 0.414090577357951 13 0.0601648376737417 0.733756183139754 551 0.348064737050485 1 1 0 -6.75007741381539 LTS-031 chr2 51144433 51144531 99 * NRXN1 NA 0 NA 0.848 1 NA NA NA NA NA LTS-031 chr2 51144532 70316358 19171827 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR3126, MIR3682, MIR4434, MIR4778, MIR4432, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, GPR75, SNRNP27, CFAP36, CCDC85A, WDR92, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, EFEMP1, AAK1, CEP68, PSME4, EHBP1, CNRIP1, GFPT1, NFU1, ERLEC1, BMP10, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, PRORSD1P, TSPYL6, EML6, NA NA NA NA NA NA NA NA NA LTS-031 LINC01122, LINC01185, LOC400958, PCBP1-AS1, MIR216A, MIR217, MXD1, MDH1, MEIS1, MTIF2, CHAC2, OTX1, PCBP1, WDPCP, ASB3, VPS54, PEX13, BCL11A, PLEK, ETAA1, AFTPH, FANCL, PPP3R1, FBXO48, CCDC88A, GKN1, PNO1, RPL23AP32, RTN4, PELI1, PPP4R3B, RAB1A, REL, RPS27A, GMCL1, LOC644838, PAPOLG, SLC1A4, SPTBN1, MEIS1-AS3, UGP2, VRK2, XPO1, FAM161A, ANTXR1, KIAA1841, PNPT1, NRXN1, USP34, SERTAD2, ACYP2, ARHGAP25 NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 ) 0.434723708793908 139 0.0783782411199381 0.981880272338476 8193 0.543737562448747 3 2 1 -6.73878590974108 LTS-031 NA NA NA NA LTS-031 chr2 70316359 71047027 730669 * c(LOC100133985, ADD2, CLEC4F, FIGLA, PCYOX1, C2orf42, SNRPG, TGFA, TIA1, FAM136A) 0.430581758097894 12 0.0679623335964767 0.792941800894074 875 0.866432447153396 2 1 1 -6.74713795037888 LTS-031 chr2 71047028 71047478 451 * CLEC4F NA 0 NA 0.958 1 NA NA NA NA NA LTS-031 chr2 71047479 73659474 2611996 * c(MPHOSPH10, SMYD5, CCT7, TEX261, FBXO41, CLEC4F, EGR4, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, ALMS1, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.439719985016298 66 0.0715665403451201 0.945792829098047 2564 0.446497887391683 3 2 1 -6.76344958720587 LTS-031 chr2 73659475 73675063 15589 * ALMS1 NA 0 NA 0.747 1 NA NA NA NA NA LTS-031 chr2 73675064 73762168 87105 * ALMS1 0.442424503336848 9 0.0572686165752626 0.624415303766147 190 0.331551132087536 0 0 0 -6.73617763382042 LTS-031 chr2 73762169 73777366 15198 * ALMS1 NA 0 NA 0.773 1 NA NA NA NA NA LTS-031 chr2 73777367 77745257 3967891 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, POLE4, SLC4A5, RTKN, TTC31, TACR1, GCFC2, ACTG2, ALMS1, MOGS, LRRTM4, INO80B, WDR54, EVA1A, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8, MRPL19) 0.426066013423832 44 0.0632029851838679 0.956163749995694 3233 0.440915118603779 3 2 1 -6.7474512845157 LTS-031 chr2 77745258 80540825 2795568 * c(SNAR-H, MIR4264, REG3G, CTNNA2, LRRTM1, REG3A, REG1A, REG1B, REG1CP, LRRTM4) 0.433346081793423 3 0.0177857620959388 0.645226264436509 306 0.379488376206688 0 0 0 -6.78720736645156 LTS-031 chr2 80540826 80555305 14480 * CTNNA2 NA 0 NA 1.104 1 NA NA NA NA NA LTS-031 chr2 80555306 87005199 6449894 * c(RNF103-CHMP3, MIR4779, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, FUNDC2P2, C2orf68, MAT2A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, KCMF1, SFTPB, RMND5A, REEP1, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10) 0.395484217155381 52 0.116794465663631 0.895362002485227 3151 0.438634292413219 2 2 0 -6.77422733647879 LTS-031 chr2 87005200 87011711 6512 * RMND5A NA 0 NA 0.606 1 NA NA NA NA NA LTS-031 chr2 87011712 87400187 388476 * c(ANAPC1P1, LOC285074, RMND5A, CD8A, CD8B) 0.378102620273741 7 0.0551724568965349 0.56556735062604 215 0.380583099679677 2 2 0 -7.04058936648736 LTS-031 chr2 87400188 87426660 26473 * RMND5A NA 0 NA 0.253873987364146 90 0.281906961746511 0 NA NA -5.93464265703096 LTS-031 chr2 87426661 89196906 1770246 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.385717453799454 26 0.101079800919106 0.684803240338299 648 0.349222585002759 1 1 0 -6.88768389783151 LTS-031 chr2 89196907 89196909 3 * character(0) NA 0 NA 0.423 1 NA NA NA NA NA LTS-031 chr2 89196910 90260022 1063113 * character(0) 0.428567096379837 3 0.0260832002126528 0.512639104722939 245 0.437598580510461 0 0 0 -6.99859762020328 LTS-031 chr2 90260023 91809286 1549264 * LOC654342 NA 0 NA 0.500415173504505 10 0.0971178550925512 0 NA NA -9.23430944040955 LTS-031 chr2 91809287 91809324 38 * LOC654342 0.279 1 NA 1.235 1 NA NA NA NA NA LTS-031 chr2 91809325 91937761 128437 * LOC654342 0.278422982582137 19 0.0567277276798507 0.841958277471825 70 0.432188020055032 4 4 0 -6.80567590356878 LTS-031 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.23986311982856 16 0.586503992597948 5 NA NA -5.76442170383145 LTS-031 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.454 1 NA 0.438 1 NA NA NA NA NA LTS-031 chr2 95537246 96049905 512660 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.464087313284083 9 0.0217198066289735 0.887550815376064 503 0.411284524041215 2 1 1 -7.46014609018728 LTS-031 chr2 96049906 96050022 117 * KCNIP3 NA 0 NA 0.524 1 NA NA NA NA NA LTS-031 chr2 96050023 96789852 739830 * c(TRIM43, GPAT2, ADRA2B, KCNIP3, ASTL, FAHD2A, TRIM43B, FAHD2CP) 0.403151120927223 39 0.0649955256427413 0.710951320882893 559 0.335560162679495 1 1 0 -6.78058866967359 LTS-031 chr2 96789853 102961647 6171795 * c(MIR3127, MIR5696, ACTR1B, TXNDC9, ARID5A, TBC1D8, MGAT4A, CNGA3, NMS, LYG1, MITD1, COX5B, C2orf15, ITPRIPL1, FAHD2B, LONRF2, DUSP2, VWA3B, CREG2, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, RNF149, STARD7-AS1, KIAA1211L, IL1R1, INPP4A, ANKRD36, AFF3, ASTL, NPAS2, COA5, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, SEMA4C, CNOT11, TMEM127, KANSL3, STARD7, ANKRD36B, RPL31, SNORD89, LINC01125, NA NA NA NA NA NA NA NA NA LTS-031 RFX8, ZAP70, IL1R2, PDCL3, TSGA10, LMAN2L, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, MAP4K4, CHST10, EIF5B) 0.434779753522752 109 0.0592727717243753 0.943273725988121 6118 0.435136711740654 3 2 1 -6.7828462779202 LTS-031 NA NA NA NA LTS-031 chr2 102961648 104996073 2034426 * c(LOC100287010, MIR4772, TMEM182, SLC9A4, SLC9A2, MFSD9, IL18RAP, IL18R1, IL1RL1) 0.41566426552034 21 0.0507526213256869 0.733976237417113 676 0.36681912408433 1 1 0 -6.74581817570225 LTS-031 chr2 104996074 105471983 475910 * c(LOC100287010, LINC01158, LINC01102, LINC01114, POU3F3) NA 0 NA 2.057 1 NA NA NA NA NA LTS-031 chr2 105471984 106682419 1210436 * c(GPR45, FHL2, LOC285000, POU3F3, MRPS9, C2orf49, NCK2, C2orf40, TGFBRAP1) 0.432731541805054 9 0.0440539442048042 1.07765045911253 644 0.989437130423559 5 3 2 -6.74395315401512 LTS-031 chr2 106682420 106687225 4806 * C2orf40 NA 0 NA 0.581 1 NA NA NA NA NA LTS-031 chr2 106687226 108998975 2311750 * c(SULT1C2P1, SULT1C4, PLGLA, RGPD4, SULT1C3, SLC5A7, RGPD3, SULT1C2, RGPD4-AS1, UXS1, C2orf40, ST6GAL2) 0.415941358539622 14 0.128501186551156 0.736857095510746 605 0.324903776992648 1 1 0 -6.7469206924637 LTS-031 chr2 108998976 108999523 548 * SULT1C4 NA 0 NA 1.214 1 NA NA NA NA NA LTS-031 chr2 108999524 112523918 3524395 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, EDAR, LINC01106, SEPT10, CCDC138, LINC00116, SULT1C4, SH3RF3, LIMS1, NPHP1, MIR4435-2HG, ACOXL, RANBP2, SOWAHC, BUB1, MALL, GCC2) 0.430971925193436 18 0.0555570718747318 0.908131913322833 1548 0.410177482498495 2 1 1 -6.76192448699423 LTS-031 chr2 112523919 112579053 55135 * ANAPC1 NA 0 NA 0.50167659878732 125 0.324552881122879 0 NA NA -5.78476815750709 LTS-031 chr2 112579054 112582505 3452 * ANAPC1 NA 0 NA 1.039 1 NA NA NA NA NA LTS-031 chr2 112582506 113405058 822553 * c(MERTK, FBLN7, TTL, ZC3H6, FLJ42351, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, TMEM87B) 0.451628452115164 29 0.0414962162201704 0.918172713188027 1106 0.391876736299295 2 1 1 -6.79855140071288 LTS-031 chr2 113405059 113405229 171 * SLC20A1 NA 0 NA 0.712 1 NA NA NA NA NA LTS-031 chr2 113405230 113960282 555053 * c(CKAP2L, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, IL36G, SLC20A1, IL1F10) 0.46391085642774 2 0.0403050865276332 0.696858261395128 820 0.28914408682144 0 0 0 -6.98040255306621 LTS-031 chr2 113960283 114004574 44292 * c(PSD4, PAX8-AS1, PAX8) NA 0 NA 1.10101923731192 123 0.381507544526607 4 NA NA -5.76441040596542 LTS-031 chr2 114004575 114035847 31273 * c(PAX8-AS1, PAX8) NA 0 NA 0.352 1 NA NA NA NA NA LTS-031 chr2 114035848 114416393 380546 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, WASH2P, FAM138B, PAX8, DDX11L2) 0.426 1 NA 0.523952721272858 102 0.308752060066365 0 0 0 -5.86977327306622 LTS-031 chr2 114416394 114424887 8494 * character(0) NA 0 NA 0.973 1 NA NA NA NA NA LTS-031 chr2 114424888 130737359 16312472 * c(RAB6C-AS1, RNU4ATAC, LOC100499194, MIR4783, MIR4782, ACTR3, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, DPP10-AS1, LOC389033, LINC01191, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, SLC35F5, TMEM177, AMMECR1L, RAB6C, NIFK, NA NA NA NA NA NA NA NA NA LTS-031 SFT2D3, LINC01101, MARCO, DDX18, HS6ST1) 0.411742031283723 81 0.107054088094653 0.917140170808396 5567 0.446119269995697 2 1 1 -6.87816000459677 LTS-031 NA NA NA NA LTS-031 chr2 130737360 130737483 124 * c(RAB6C-AS1, RAB6C) NA 0 NA 0.307 1 NA NA NA NA NA LTS-031 chr2 130737484 130909645 172162 * c(RAB6C-AS1, MED15P9, FAR2P1, SMPD4, POTEF, RAB6C, CCDC74B) 0.473615357294207 4 0.0447762958122561 0.567066130116971 170 0.672785425282074 0 0 0 -7.08117732991966 LTS-031 chr2 130909646 130949364 39719 * c(TUBA3E, SMPD4, MZT2B) NA 0 NA 0.965087972003163 156 0.39970914363287 3 NA NA -5.76449674699029 LTS-031 chr2 130949365 130969844 20480 * TUBA3E NA 0 NA 0.492386754655082 49 0.263949411188331 0 NA NA -5.7775959329367 LTS-031 chr2 130969845 130987642 17798 * character(0) NA 0 NA 1.043 1 NA NA NA NA NA LTS-031 chr2 130987643 131296646 309004 * c(FAR2P2, PTPN18, POTEI, CFC1B, CCDC115, IMP4) NA 0 NA 1.11970735449086 262 0.424383159865135 4 NA NA -5.76466103308097 LTS-031 chr2 131296647 131296734 88 * character(0) NA 0 NA 0.796 1 NA NA NA NA NA LTS-031 chr2 131296735 131769390 472656 * c(CYP4F30P, AMER3, GPR148, ARHGEF4, CFC1, POTEJ) 0.408640563788213 2 0.0318198051533946 0.609979037950531 315 0.294836854105578 1 1 0 -6.93540907425543 LTS-031 chr2 131769391 131906019 136629 * c(FAM168B, ARHGEF4, PLEKHB2) 0.449472217897808 3 0.0213619599600161 0.869501526346684 199 0.377005935910687 2 1 1 -6.88295554086929 LTS-031 chr2 131906020 131906118 99 * PLEKHB2 NA 0 NA 0.727 1 NA NA NA NA NA LTS-031 chr2 131906119 132229699 323581 * c(WTH3DI, LINC01120, NOC2LP2, LOC440910, POTEE, PLEKHB2) 0.399084523319969 16 0.0831840329229915 0.554546475915655 186 0.310069166286217 0 0 0 -6.91419959854126 LTS-031 chr2 132229700 132229720 21 * character(0) 0.298 1 NA 1.66 1 NA NA NA NA NA LTS-031 chr2 132229721 135714001 3484281 * c(CCNT2-AS1, MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, ACMSD, LOC150776, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, MZT2A, TMEM163, CCNT2, CCDC74A) 0.401701189283936 52 0.0723723925097597 0.913212581768439 1121 0.383115697561763 2 2 0 -6.87841447302676 LTS-031 chr2 135714002 135714075 74 * CCNT2 NA 0 NA 0.847 1 NA NA NA NA NA LTS-031 chr2 135714076 138434605 2720530 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, CXCR4, MAP3K19, THSD7B, ZRANB3, CCNT2) 0.439463302681076 31 0.0516469403896582 0.745487188442155 1442 0.33333953650493 1 1 0 -6.84559228533615 LTS-031 chr2 138434606 139428311 993706 * c(NXPH2, HNMT, SPOPL, THSD7B) 0.446410808729329 5 0.0236050841981129 1.04078921272984 287 0.56865968171255 4 2 2 -6.80311831288158 LTS-031 chr2 139428312 144704770 5276459 * c(NXPH2, LRP1B, ARHGAP15, YY1P2, GTDC1, KYNU) 0.426022829418086 6 0.0720761171725189 0.7208034598505 785 0.348231090763617 1 1 0 -6.81780720763483 LTS-031 chr2 144704771 144709529 4759 * GTDC1 NA 0 NA 1.653 1 NA NA NA NA NA LTS-031 chr2 144709530 152363540 7654011 * c(ZEB2-AS1, MIR4773-1, MIR4773-2, LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, TEX41, NEB, ORC4, RIF1, MBD5, TNFAIP6, PABPC1P2, GTDC1, NMI, ACVR2A, ZEB2) 0.451264569715613 39 0.0520773068038337 0.960958970723857 1838 0.459080313500212 3 2 1 -6.86425222244568 LTS-031 chr2 152363541 152364520 980 * c(NEB, RIF1) NA 0 NA 0.724 1 NA NA NA NA NA LTS-031 chr2 152364521 152739969 375449 * c(ARL5A, NEB, RIF1, CACNB4) 0.440211542978734 21 0.0442292727888281 0.767579113375653 1034 0.319453536708492 2 1 1 -6.77133107549516 LTS-031 chr2 152739970 152827979 88010 * CACNB4 NA 0 NA 1.042 1 NA NA NA NA NA LTS-031 chr2 152827980 157442496 4614517 * c(LOC100144595, STAM2, FMNL2, GALNT13, ARL6IP6, GPD2, KCNJ3, NR4A2, PRPF40A, RPRM, CACNB4) 0.384533243747292 9 0.150776140169605 1.03240169020826 1227 0.534977037755303 4 3 1 -6.77679456969455 LTS-031 chr2 157442497 159028780 1586284 * c(GALNT5, ACVR1C, CCDC148, UPP2, GPD2, CCDC148-AS1, ERMN, ACVR1, CYTIP) 0.416344107349546 5 0.0566630390995753 0.762013616424742 592 0.355301397181135 1 1 0 -6.73330633443035 LTS-031 chr2 159028781 159032951 4171 * c(CCDC148, CCDC148-AS1) NA 0 NA 1.612 1 NA NA NA NA NA LTS-031 chr2 159032952 162017472 2984521 * c(TANK, LY75-CD302, MIR4785, CCDC148, WDSUB1, PLA2R1, BAZ2B, ITGB6, LY75, CCDC148-AS1, RBMS1, MARCH7, PKP4, TANC1, DAPL1, CD302) 0.425913084207902 34 0.0939678330823317 1.04623591156505 1660 0.511689932408114 3 2 1 -6.75530138478315 LTS-031 chr2 162017473 162017714 242 * TANK NA 0 NA 0.718 1 NA NA NA NA NA LTS-031 chr2 162017715 164450352 2432638 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, SLC4A10, IFIH1, KCNH7) 0.322792735193399 10 0.184441017371107 0.733411477330119 1109 0.560535227436155 1 1 0 -6.89372115318438 LTS-031 chr2 164450353 164459089 8737 * character(0) NA 0 NA 1.174 1 NA NA NA NA NA LTS-031 chr2 164459090 165944707 1485618 * c(SNORA70F, SLC38A11, COBLL1, GRB14, FIGN, SCN3A) 0.425855772244742 13 0.0793561430255871 0.956105768187807 691 0.496703723263297 3 2 1 -6.73767426518373 LTS-031 chr2 165944708 166248734 304027 * c(SCN2A, SCN3A) 0.413663299258789 5 0.0786365055174758 0.622886772536014 437 0.215796066627464 0 0 0 -6.79912098317771 LTS-031 chr2 166248735 166846016 597282 * c(LOC100506124, TTC21B-AS1, GALNT3, SCN1A, SCN2A, TTC21B, CSRNP3) 0.417835208390314 3 0.0590705792534096 0.921157632347732 503 0.495141076573575 3 2 1 -6.75936987741688 LTS-031 chr2 166846017 166846084 68 * SCN1A NA 0 NA 0.575 1 NA NA NA NA NA LTS-031 chr2 166846085 168726996 1880912 * c(XIRP2, SCN1A, SCN7A, SCN9A, B3GALT1) 0.393651301465646 18 0.0622996134022143 0.666368602757333 962 0.875301263826886 1 1 0 -6.84591467243753 LTS-031 chr2 168726997 169681224 954228 * c(MIR4774, CERS6-AS1, NOSTRIN, CERS6, STK39, B3GALT1) 0.386985856009903 9 0.150020831886775 0.965661308804789 352 0.474797826868028 2 2 0 -6.7661897277406 LTS-031 chr2 169681225 169684593 3369 * NOSTRIN NA 0 NA 0.787 1 NA NA NA NA NA LTS-031 chr2 169684594 171717304 2032711 * c(NA, PHOSPHO2-KLHL23, DHRS9, KLHL41, NOSTRIN, BBS5, CCDC173, UBR3, MYO3B, KLHL23, GAD1, METTL5, SP5, LRP2, LINC01124, PHOSPHO2, SPC25, G6PC2, SSB, FASTKD1, ABCB11, PPIG) 0.419645796690937 57 0.0595448484121933 0.756847486641837 2316 0.400806438512673 1 1 0 -6.73402489467177 LTS-031 chr2 171717305 171717309 5 * GAD1 NA 0 NA 0.92 1 NA NA NA NA NA LTS-031 chr2 171717310 176972303 5254994 * c(MIR933, SP9, RAPGEF4, CHN1, CHRNA1, ATF2, GPR155, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, LINC01305, OLA1, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, PDK1, ZAK, ATP5G3, SP3, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, CIR1, TLK1) 0.400754866984632 54 0.0806280574477566 0.909048587462903 3519 0.506572764829271 2 2 0 -6.84206626165785 LTS-031 chr2 176972304 176972521 218 * HOXD11 NA 0 NA 1.825 1 NA NA NA NA NA LTS-031 chr2 176972522 178378623 1406102 * c(LOC100130691, MIR1246, MIR3128, HOXD-AS2, MTX2, HNRNPA3, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, LINC01116, HAGLR, MIR10B, NFE2L2, AGPS) 0.461329706319773 17 0.0580196467738705 1.09830717143015 674 0.574161843632753 4 2 2 -6.82329428672636 LTS-031 chr2 178378624 179397541 1018918 * c(MIR548N, TTN-AS1, OSBPL6, RBM45, TTC30B, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, AGPS, PRKRA, TTC30A) 0.328940770948647 3 0.272782575201081 0.82140861817408 1079 0.388955177214761 2 2 0 -6.76204377120463 LTS-031 chr2 179397542 179659911 262370 * c(MIR548N, TTN-AS1, TTN) 0.364214243680994 2 0.0530330085889911 0.630068553453852 2864 0.206654487606384 2 2 0 -7.11116492557866 LTS-031 chr2 179659912 186673063 7013152 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, NUP35, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, FSIP2, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, TTN, SESTD1, ZNF804A) 0.388176802726352 76 0.0753525643051942 0.80364455598848 2656 0.426516587193589 1 1 0 -6.89026702647723 LTS-031 chr2 186673064 192813918 6140855 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, ANKAR, ZSWIM2, FAM171B, TMEFF2, HIBCH, MSTN, GLS, SLC40A1, INPP1, ITGAV, FSIP2, MYO1B, NAB1, GULP1, PMS1, ASNSD1, MFSD6, ZC3H15, OSGEPL1, NABP1, STAT1, STAT4, MIR561, TFPI, WDR75, C2orf88, SDPR, ORMDL1) 0.41964888167809 47 0.0843081656188133 0.966374821138785 3827 0.524111743161078 3 2 1 -6.74639543622162 LTS-031 chr2 192813919 199011810 6197892 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, TMEFF2, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, PCGEM1, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.436813503106817 37 0.0503568497059964 0.788170084942296 2570 0.386753574424986 1 1 0 -6.84975482312134 LTS-031 chr2 199011811 199011955 145 * PLCL1 NA 0 NA 1.547 1 NA NA NA NA NA LTS-031 chr2 199011956 201686826 2674871 * c(LOC100507140, TYW5, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, SPATS2L, AOX1, AOX2P, FTCDNL1, PLCL1, C2orf47, BZW1) 0.457266012535902 15 0.0374636331596898 1.0326247864606 1013 0.480650577227165 4 2 2 -6.90701239682303 LTS-031 chr2 201686827 201717897 31071 * c(CLK1, BZW1) NA 0 NA 0.560380786946315 40 0.347364242989534 0 NA NA -5.7676288824073 LTS-031 chr2 201717898 206305428 4587531 * c(SNORD11B, KIAA2012, ABI2, PARD3B, CLK1, ICA1L, ALS2CR12, CTLA4, FAM117B, ALS2CR11, FAM126B, ICOS, NDUFB3, ORC2, NOP58, PPIL3, STRADB, WDR12, CYP20A1, ALS2, MPP4, NIF3L1, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, CFLAR, CD28) 0.389653985753082 34 0.120762657430143 0.917846638055046 4127 0.533434046369982 2 2 0 -6.77249669313944 LTS-031 chr2 206305429 206364567 59139 * PARD3B NA 0 NA 1.201 1 NA NA NA NA NA LTS-031 chr2 206364568 207027418 662851 * c(GCSHP3, PARD3B, EEF1B2, SNORD51, NDUFS1, INO80D, SNORA41, NRP2) 0.438819637042633 16 0.0561331749799825 1.16214579933617 820 0.561339113302814 4 2 2 -6.73655293641071 LTS-031 chr2 207027419 207834257 806839 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, EEF1B2, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, ADAM23) 0.397500129639478 23 0.0961586921247697 0.742627738173941 823 0.359922516209176 1 1 0 -6.76124359269961 LTS-031 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.349 1 NA NA NA NA NA LTS-031 chr2 207908643 208030651 122009 * c(MIR2355, KLF7) 0.447381857188183 6 0.0559380609841516 1.40026701945029 209 0.773591452254897 6 3 3 -6.74790717810107 LTS-031 chr2 208030652 208031820 1169 * KLF7 NA 0 NA 0.717 1 NA NA NA NA NA LTS-031 chr2 208031821 209293007 1261187 * c(LOC100507443, IDH1-AS1, MIR4775, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, METTL21A, CCNYL1, PIKFYVE, IDH1, PLEKHM3, C2orf80, PTH2R, FZD5, KLF7) 0.456202825996463 15 0.0317239581989626 0.954179391921087 1165 0.627796081894092 2 1 1 -6.92552986186555 LTS-031 chr2 209293008 216248966 6955959 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, LANCL1, CPS1, KANSL1L, ERBB4, IKZF2, FN1, ABCA12, UNC80, CPS1-IT1, ACADL, VWC2L, MAP2, MYL1, ATIC, PTH2R, BARD1, RPE, SPAG16) 0.389395224245173 43 0.0726444640814651 0.722271327092328 2842 0.349996370765347 1 1 0 -6.91400880253504 LTS-031 chr2 216248967 216249540 574 * FN1 NA 0 NA 1.205 1 NA NA NA NA NA LTS-031 chr2 216249541 217498563 1249023 * c(PKI55, FN1, IGFBP2, SMARCAL1, MREG, PECR, MARCH4, RPL37A, LINC00607, XRCC5, TMEM169) 0.413571697347159 11 0.0731522695851232 0.867996323977549 757 0.44832111230164 1 1 0 -6.79844350057386 LTS-031 chr2 217498564 218867721 1369158 * c(IGFBP2, IGFBP5, TNP1, TNS1, DIRC3) 0.379402371820847 6 0.0558199486444288 1.13367666503492 599 0.45012894221851 4 3 1 -6.7780326986882 LTS-031 chr2 218867722 218924289 56568 * c(RUFY4, CXCR2P1) NA 0 NA 0.569 1 NA NA NA NA NA LTS-031 chr2 218924290 219854952 930663 * c(ARPC2, AAMP, CRYBA2, LINC00608, GPBAR1, CYP27A1, PNKD, STK36, RUFY4, CXCR1, CXCR2, CXCR2P1, CATIP, MIR26B, PRKAG3, FEV, USP37, CTDSP1, BCS1L, TMBIM1, RNF25, SLC11A1, VIL1, WNT6, ZNF142, WNT10A, PLCD4, CDK5R2, CNOT9, TTLL4) 0.40388480416376 47 0.0773539206968757 0.869955059391131 2393 0.505974601640019 1 1 0 -6.79035134280486 LTS-031 chr2 219854953 220012541 157589 * c(LOC100129175, MIR3131, CRYBA2, CFAP65, IHH, MIR375, NHEJ1) NA 0 NA 0.707346183191286 377 0.341939015400993 1 NA NA -5.76875391260466 LTS-031 chr2 220012542 220022253 9712 * NHEJ1 NA 0 NA 1.486 1 NA NA NA NA NA LTS-031 chr2 220022254 224462021 4439768 * c(MIR4268, MIR3132, FARSB, ABCB6, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, CCDC140, SLC23A3, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CNPPD1, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, PAX3, ANKZF1, ASIC4, PTPRN, SLC4A3, TUBA4A, SCG2, ATG9A, FAM134A, GLB1L, CHPF, NHEJ1, TUBA4B, STK16) 0.388131840323611 35 0.0877387068075938 0.978922354999912 3245 0.484465193333578 3 2 1 -6.85778501230661 LTS-031 chr2 224462022 228992944 4530923 * c(MIR4439, MIR5702, MIR5703, COL4A3, COL4A4, AP1S3, DAW1, AGFG1, IRS1, SERPINE2, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3) 0.413411506092482 83 0.0744123772009301 0.733246217621575 2714 0.365457812230719 1 1 0 -6.76314519452805 LTS-031 chr2 228992945 228993090 146 * SPHKAP NA 0 NA 1.02 1 NA NA NA NA NA LTS-031 chr2 228993091 234474054 5480964 * c(MIR1471, MIR4777, NMUR1, SP140, CHRND, CHRNG, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, PID1, ATG16L1, USP40, PSMD1, PTMA, SNORD20, SAG, PRSS56, COPS7B, SNORA75, SP100, SCARNA6, SCARNA5, ARMC9, EFHD1, SPHKAP, ITM2C, NA NA NA NA NA NA NA NA NA LTS-031 DGKD, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.374861672067303 122 0.0857176076688028 0.808402021915716 4742 0.398196261400018 2 2 0 -6.86258535123181 LTS-031 NA NA NA NA LTS-031 chr2 234474055 234677074 203020 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.326 1 NA 0.4075648212698 234 0.149109493227686 0 0 0 -6.75477874940922 LTS-031 chr2 234677075 234678064 990 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) NA 0 NA 0.588 1 NA NA NA NA NA LTS-031 chr2 234678065 234978746 300682 * c(MSL3P1, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, SPP2, TRPM8) 0.328739076090522 18 0.0714488710650531 0.586249561615428 576 0.302486909446464 2 2 0 -7.21912881256086 LTS-031 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 1.602 1 NA NA NA NA NA LTS-031 chr2 235401661 237490182 2088522 * c(ARL4C, AGAP1, SH3BP4, GBX2, ASB18, ACKR3, IQCA1) 0.341837971379717 11 0.0974903258603829 0.787168597424339 684 0.404320627044489 2 2 0 -6.8639701364286 LTS-031 chr2 237490183 237490290 108 * ACKR3 NA 0 NA 0.972 1 NA NA NA NA NA LTS-031 chr2 237490291 238722294 1232004 * c(COPS8, COL6A3, RBM44, PRLH, ACKR3, RAB17, MLPH, LRRFIP1) 0.405991105515342 20 0.0583034484851725 1.03562030791528 956 0.509853837654256 4 3 1 -6.76857662323784 LTS-031 chr2 238722295 239077387 355093 * c(UBE2F-SCLY, RAMP1, UBE2F, ESPNL, RBM44, KLHL30, SCLY) 0.364360527571852 34 0.0829885899422689 0.717837559481526 628 0.323901866543616 2 2 0 -6.81345261931392 LTS-031 chr2 239077388 240219924 1142537 * c(MIR4440, MIR4441, TWIST2, LINC01107, LOC151174, TRAF3IP1, FLJ43879, ASB1, HES6, LOC643387, ILKAP, MGC16025, PER2, HDAC4) 0.413483464631626 33 0.0956378110847948 1.00815265548994 953 0.760775844545674 3 2 1 -6.74799687736162 LTS-031 chr2 240219925 240273303 53379 * c(MIR4269, HDAC4) NA 0 NA 0.883 1 NA NA NA NA NA LTS-031 chr2 240273304 241556018 1282715 * c(PP14571, MIR2467, MIR4786, CAPN10, OTOS, COPS9, OR6B3, LOC150935, GPC1, DUSP28, GPR35, OR6B2, MIR149, NDUFA10, ANKMY1, RNPEPL1, PRR21, HDAC4) 0.372580355627434 46 0.113308857118273 0.787222986050724 1067 0.431868871301693 2 2 0 -6.77925009686759 LTS-031 chr2 241556019 241556232 214 * c(CAPN10, GPR35) NA 0 NA 0.493 1 NA NA NA NA NA LTS-031 chr2 241556233 241656888 100656 * c(CAPN10, GPR35, AQP12A, KIF1A, AQP12B) 0.38603195804502 8 0.0659218964272982 0.554356183357991 237 0.231063177626029 1 1 0 -6.97864325968144 LTS-031 chr2 241656889 241657407 519 * KIF1A NA 0 NA 0.666 1 NA NA NA NA NA LTS-031 chr2 241657408 242836535 1179128 * c(BOK-AS1, STK25, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, RTP5, HDLBP, SEPT2, ANO7, THAP4, PDCD1, KIF1A, PPP1R7, GAL3ST2, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.381014489392817 73 0.0704477255812693 0.844452208464946 2666 0.548733823102551 2 2 0 -6.75307830265342 LTS-031 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.925005214775181 29 0.389587090372899 2 NA NA -5.76687044758981 LTS-031 chr3 239351 418089 178739 * CHL1 0.469 1 NA 0.870826529627806 69 0.290255188747859 2 2 0 -5.76443773093896 LTS-031 chr3 418090 3171749 2753660 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, IL5RA, TRNT1) 0.388995970522824 12 0.0611062165165681 0.704020158005719 547 0.304900197092921 1 1 0 -6.96747469073191 LTS-031 chr3 3171750 3171853 104 * TRNT1 NA 0 NA 0.861 1 NA NA NA NA NA LTS-031 chr3 3171854 10005534 6833681 * c(EGOT, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, SUMF1, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, ITPR1, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SSUH2, TRNT1, CRBN, ARL8B, SETD5, RAD18, LRRN1, CIDEC, SETMAR, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, BHLHE40, CAV3, EDEM1, SRGAP3) 0.447909189193997 87 0.0403315085269421 0.99930256605787 3805 0.492929564367759 3 2 1 -6.87250877027315 LTS-031 chr3 10005535 11596302 1590768 * c(MIR885, GHRLOS, SLC6A1-AS1, ATG7, FANCD2OS, CIDECP, FANCD2, LINC00606, HRH1, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, SLC6A1, SLC6A11, VHL, LINC00852, TATDN2) 0.429633784742644 28 0.051619999405505 0.843935606160938 1502 0.380473964027479 2 1 1 -6.75986237300794 LTS-031 chr3 11596303 11596376 74 * ATG7 NA 0 NA 1.154 1 NA NA NA NA NA LTS-031 chr3 11596377 11734752 138376 * c(ATG7, VGLL4) 0.415 1 NA 1.42803615505251 150 0.50962924963206 7 7 0 -5.7644475499585 LTS-031 chr3 11734753 11744382 9630 * VGLL4 NA 0 NA 0.547 1 NA NA NA NA NA LTS-031 chr3 11744383 14166744 2422362 * c(MKRN2OS, FGD5P1, CHCHD4, TAMM41, FBLN2, CAND2, NUP210, MKRN2, LINC00620, TPRXL, PPARG, TMEM40, RAF1, RPL32, SYN2, TIMP4, WNT7A, TMEM43, HDAC11, TSEN2, VGLL4, IQSEC1) 0.43659074983997 18 0.0399267712045882 0.942414827346903 1707 0.409186360855386 3 2 1 -6.77814721752623 LTS-031 chr3 14166745 14170333 3589 * TMEM43 NA 0 NA 1.523 1 NA NA NA NA NA LTS-031 chr3 14170334 14564704 394371 * c(LSM3, SLC6A6, XPC, TMEM43, GRIP2) 0.439306622285844 3 0.0265769323537035 1.23357395312879 582 0.462350055452249 6 3 3 -6.73962788270401 LTS-031 chr3 14564705 14565031 327 * GRIP2 NA 0 NA 0.836 1 NA NA NA NA NA LTS-031 chr3 14565032 17470057 2905026 * c(MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, GALNT15, METTL6, FGD5, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, DPH3, COL6A4P1, CCDC174, RBSN, MRPS25, BTD, MIR563, NR2C2, GRIP2, COLQ, C3orf20, EAF1, OXNAD1, SH3BP5, TBC1D5) 0.443955347306023 60 0.0727907359692005 0.956029193563233 2468 0.447191748687279 3 2 1 -6.77017085535633 LTS-031 chr3 17470058 17549908 79851 * TBC1D5 NA 0 NA 0.514 1 NA NA NA NA NA LTS-031 chr3 17549909 20053837 2503929 * c(MIR4791, KCNH8, PP2D1, EFHB, LOC339862, RAB5A, SATB1, TBC1D5) 0.437928522632156 16 0.051378984030438 0.675445702439274 589 0.294429798835602 0 0 0 -6.764132571611 LTS-031 chr3 20053838 20081505 27668 * character(0) NA 0 NA 1.477 1 NA NA NA NA NA LTS-031 chr3 20081506 25760677 5679172 * c(MIR548AC, MIR4792, MIR4442, SGO1-AS1, SGO1, LINC00691, NKIRAS1, VENTXP7, NGLY1, RARB, RPL15, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, KAT2B, NR1D2) 0.439844105390807 22 0.0385982750887503 0.998074619734951 1104 0.479765539240739 3 2 1 -6.7868708952479 LTS-031 chr3 25760678 27326549 1565872 * c(LRRC3B, NEK10, LINC00692, OXSM, NGLY1) 0.436980544372817 11 0.0592524644673498 0.733328493937467 316 0.499799304828943 0 0 0 -6.79137048995641 LTS-031 chr3 27326550 27329168 2619 * NEK10 NA 0 NA 0.892 1 NA NA NA NA NA LTS-031 chr3 27329169 37315155 9985987 * c(PDCD6IP, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, CCR4, TRIM71, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, GADL1, ZNF860, MIR128-2, MLH1, DYNC1LI1, CMTM6, AZI2, TMPPE, LINC00693, STAC, TGFBR2, UBP1, EOMES, DCLK3, LRRFIP2, SLC4A7, EPM2AIP1, TRANK1) 0.440651267422499 83 0.0551296604315736 0.938575577453554 4214 0.797507169375822 2 1 1 -6.7799654856848 LTS-031 chr3 37315156 37318147 2992 * GOLGA4 NA 0 NA 0.426 1 NA NA NA NA NA LTS-031 chr3 37318148 37323671 5524 * GOLGA4 NA 0 NA 0.469226385747745 40 0.236817445649814 0 NA NA -5.77052688624368 LTS-031 chr3 37323672 38087163 763492 * c(CTDSPL, GOLGA4, C3orf35, ITGA9, MIR26A1, VILL, PLCD1, DLEC1) 0.446019409286443 9 0.035507041555162 1.12978548173531 834 0.485166830316271 4 2 2 -6.75987087221764 LTS-031 chr3 38087164 38101126 13963 * DLEC1 NA 0 NA 0.718 1 NA NA NA NA NA LTS-031 chr3 38101127 44778594 6677468 * c(ACVR2B-AS1, KRBOX1, SNRK-AS1, CCDC13-AS1, ZNF197, EIF1B, SCN11A, ZNF501, CCR8, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, HIGD1A, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, ACAA1, ZNF445, TOPAZ1, ZNF662, RPSA, MIR138-1, MOBP, EIF1B-AS1, MYD88, NKTR, ABHD5, SS18L2, SNRK, SLC25A38, ULK4, ANO10, ZKSCAN7, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, NA NA NA NA NA NA NA NA NA LTS-031 GORASP1, FAM198A, VIPR1, ZNF35, POMGNT2, CCK, RPL14, SEC22C, ZNF502, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, DLEC1, EXOG, XYLB, OXSR1) 0.434179744228521 127 0.0672404739709092 0.918893510625671 6312 0.433923275705502 2 1 1 -6.78649762780023 LTS-031 NA NA NA NA LTS-031 chr3 44778595 44790198 11604 * character(0) NA 0 NA 0.328 1 NA NA NA NA NA LTS-031 chr3 44790199 44794486 4288 * KIAA1143 NA 0 NA 0.461991252657209 94 0.25749785689437 0 NA NA -5.76882432709415 LTS-031 chr3 44794487 44966500 172014 * c(TMEM42, ZDHHC3, KIF15, KIAA1143, MIR564, TGM4) 0.443868525933903 11 0.044300831102403 0.733845008408013 438 0.388754175698495 0 0 0 -6.75186340644331 LTS-031 chr3 44966501 45883676 917176 * c(LARS2-AS1, SACM1L, EXOSC7, LARS2, TMEM158, ZDHHC3, LZTFL1, SLC6A20, LIMD1-AS1, CDCP1, CLEC3B, LIMD1) 0.446051262760922 23 0.102077897868253 0.972644603635528 1070 0.435693982675063 3 2 1 -6.75173501166172 LTS-031 chr3 45883677 45896445 12769 * LZTFL1 NA 0 NA 0.6 1 NA NA NA NA NA LTS-031 chr3 45896446 45943456 47011 * c(CCR9, LZTFL1) NA 0 NA 0.365073133538357 39 0.0869224451507501 0 NA NA -6.79181788673769 LTS-031 chr3 45943457 45943543 87 * c(CCR9, LZTFL1) NA 0 NA 1.007 1 NA NA NA NA NA LTS-031 chr3 45943544 46713671 770128 * c(LOC100132146, CXCR6, CCR9, CCR1, CCR3, CCR5, ALS2CL, XCR1, LTF, LZTFL1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, CCRL2) 0.447942329037071 62 0.0466104846773926 0.807493277340457 1175 0.340000542681753 2 1 1 -6.78230986700708 LTS-031 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 0.956 1 NA NA NA NA NA LTS-031 chr3 46714809 49689824 2975016 * c(NRADDP, BSN-AS2, PRSS46, MIR1226, MIR711, MIR4271, MIR4793, MIR4443, NME6, ARIH2, CSPG5, USP19, WDR6, TREX1, COL7A1, CCDC12, DAG1, CELSR3, KLHDC8B, DHX30, SCAP, LAMB2P1, NBEAL2, KLHL18, NDUFAF3, ALS2CL, TMIE, PTPN23, AMT, FBXW12, KIF9-AS1, GPX1, SETD2, PRSS50, CCDC36, PRSS42, IMPDH2, C3orf62, PRSS45, RHOA, LAMB2, MIR191, MAP4, TMEM89, MYL3, MIR425, SHISA5, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, NA NA NA NA NA NA NA NA NA LTS-031 PLXNB1, P4HTM, ELP6, QRICH1, DALRD3, PRKAR2A, PTH1R, QARS, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, SLC26A6, SMARCC1, TCTA, USP4, UQCRC1, SLC25A20, CCDC51, CAMP, ATRIP, NICN1, BSN, UCN2, CDC25A) 0.447348305272556 58 0.0705948388798149 0.972320494672209 6984 0.418279344028317 3 2 1 -6.77887505338349 LTS-031 NA NA NA NA LTS-031 chr3 49689825 49694672 4848 * BSN 0.47 1 NA 0.514735983499511 109 0.225576463179873 0 0 0 -5.76741467219847 LTS-031 chr3 49694673 51813496 2118824 * c(MIR4787, RBM5-AS1, MIR5193, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, CISH, LSMEM2, DOCK3, RAD54L2, NAT6, GNAI2, GNAT1, GRM2, RBM15B, GMPPB, APEH, HYAL1, AMIGO3, CDHR4, FAM212A, IQCF6, MST1, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, RNF123, SEMA3F, UBA7, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, HYAL3, MON1A, HYAL2, BSN, CACNA2D2, DCAF1, IP6K1) 0.44182434448528 47 0.0461939562185286 0.946266344370749 4263 0.379878583073735 2 1 1 -6.78954411538905 LTS-031 chr3 51813497 51909621 96125 * c(IQCF4, IQCF1, IQCF2, IQCF5, IQCF3) 0.458 1 NA 0.557669006286924 74 0.235673612932493 0 0 0 -5.78744546846727 LTS-031 chr3 51909622 51910960 1339 * IQCF1 NA 0 NA 1.181 1 NA NA NA NA NA LTS-031 chr3 51910961 57287823 5376863 * c(SNORD19B, LINC00696, PARP3, MIR3938, ABHD14A-ACY1, TMEM110-MUSTN1, ARHGEF3-AS1, CACNA2D3-AS1, NISCH, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DUSP7, ALAS1, STAB1, FAM208A, ABHD14A, POC1A, DNAH1, ERC2, APPL1, GNL3, CCDC66, SPCS1, SPATA12, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, ARHGEF3, SFMBT1, PHF7, TLR9, IL17RD, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, NA NA NA NA NA NA NA NA NA LTS-031 LRTM1, SELENOK, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, TNNC1, WNT5A, CACNA1D, ESRG, WDR82, BAP1, ABHD14B, HESX1, RRP9, RFT1, ACTR8, ACY1) 0.446142269851858 144 0.0576313434366166 0.985155255406239 6183 0.436162224238335 3 2 1 -6.78972296980183 LTS-031 NA NA NA NA LTS-031 chr3 57287824 57290949 3126 * APPL1 NA 0 NA 0.767 1 NA NA NA NA NA LTS-031 chr3 57290950 57561272 270323 * c(ASB14, DNAH12, PDE12, APPL1, ARF4) 0.392254578504097 13 0.128047517221798 0.778531253673786 603 0.384633291162492 1 1 0 -6.75689298995166 LTS-031 chr3 57561273 58156806 595534 * c(DENND6A, FLNB, ARF4, SLMAP) 0.443902620362638 23 0.0566342889753816 1.1417467207123 769 0.541133582273912 4 2 2 -6.73967036908524 LTS-031 chr3 58156807 63849525 5692719 * c(PTPRG-AS1, SYNPR-AS1, RPP14, FAM107A, FAM3D, C3orf49, SNTN, SYNPR, DNASE1L3, C3orf67, KCTD6, FHIT, FLNB, LINC00698, PDHB, PXK, FEZF2, ABHD6, C3orf14, PTPRG, THOC7, ACOX2, CADPS) 0.418828677197576 39 0.105744427468405 0.905623716631692 1890 0.469390862250928 2 1 1 -6.77248029854995 LTS-031 chr3 63849526 63849529 4 * THOC7 NA 0 NA 2.496 1 NA NA NA NA NA LTS-031 chr3 63849530 63989109 139580 * c(ATXN7, THOC7) NA 0 NA 1.58815187034175 175 0.77897020555951 8 NA NA -5.76446323028437 LTS-031 chr3 63989110 63996184 7075 * c(PSMD6-AS2, ATXN7) NA 0 NA 0.787 1 NA NA NA NA NA LTS-031 chr3 63996185 67048835 3052651 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, PRICKLE2, LRIG1, ADAMTS9, MIR548A2, KBTBD8, MAGI1, PSMD6) 0.471371504426258 9 0.0222061052665953 1.17138332949609 964 0.492419333041862 4 2 2 -7.842162709249 LTS-031 chr3 67048836 67049346 511 * KBTBD8 NA 0 NA 0.446 1 NA NA NA NA NA LTS-031 chr3 67049347 69024824 1975478 * c(MIR4272, FAM19A4, EOGT, FAM19A1, KBTBD8, SUCLG2) 0.420776193166503 16 0.119035271383457 0.689917620347463 338 0.457146249480259 0 0 0 -6.76945405277786 LTS-031 chr3 69024825 70014686 989862 * c(MIR3136, ARL6IP5, FRMD4B, EOGT, MITF, LMOD3, TMF1, UBA3) 0.397135978528601 17 0.124660037702545 0.993922237934817 819 0.5187549672879 4 3 1 -6.75693707588172 LTS-031 chr3 70014687 72495944 2481258 * c(MIR1284, LINC00870, RYBP, FOXP1, GPR27, EIF4E3, MITF, PROK2) 0.442241307890443 2 0.0586898628384834 1.27800685518337 612 0.716040761337296 6 3 3 -6.73984816265643 LTS-031 chr3 72495945 75679988 3184044 * c(MIR1324, PPP4R2, PDZRN3, CNTN3, EBLN2, SHQ1, FAM86DP, GXYLT2) 0.463443427660755 15 0.0262647690878503 0.931579658279614 653 0.503441740028597 2 1 1 -7.25424663033837 LTS-031 chr3 75679989 75679997 9 * MIR1324 0.336 1 NA 1.46 1 NA NA NA NA NA LTS-031 chr3 75679998 87276522 11596525 * c(ZNF717, MIR1324, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, VGLL3, LINC00971, ROBO1, ROBO2) 0.33694627078705 218 0.0885533279981482 0.987475751794792 1307 0.498255626610116 3 3 0 -6.74018975349372 LTS-031 chr3 87276523 90283666 3007144 * c(EPHA3, CHMP2B, C3orf38, HTR1F, POU1F1, ZNF654, CGGBP1) NA 0 NA 0.863732698873375 705 0.452835236128935 2 NA NA -5.76585940342138 LTS-031 chr3 93591838 93777063 185226 * c(ARL13B, DHFR2, STX19, PROS1) 0.475 1 NA 0.909956018433129 221 0.528904752393162 2 2 0 -5.76502358376729 LTS-031 chr3 93777064 97744532 3967469 * c(MTHFD2P1, CRYBG3, DHFR2, GABRR3, LINC00879, EPHA6, NSUN3, ARL6, MINA) 0.274876603868706 6 0.190211899382417 0.82789886698907 771 0.463138351542673 2 2 0 -6.91040597050704 LTS-031 chr3 97744533 97753683 9151 * GABRR3 NA 0 NA 0.482 1 NA NA NA NA NA LTS-031 chr3 97753684 98217541 463858 * c(GABRR3, OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, OR5H6, OR5H2, OR5AC2) 0.460173873736322 5 0.0560642488578952 0.449176564735942 204 0.224349552536153 0 0 0 -7.48034016740899 LTS-031 chr3 98217542 98219701 2160 * character(0) NA 0 NA 0.849 1 NA NA NA NA NA LTS-031 chr3 98219702 98513185 293484 * c(ST3GAL6-AS1, ST3GAL6, CPOX, GPR15, CLDND1) 0.471620083703632 10 0.0253508711224421 0.776856207190534 267 0.426521311531974 2 1 1 -7.62038489825709 LTS-031 chr3 98513186 98514783 1598 * ST3GAL6 NA 0 NA 1.021 1 NA NA NA NA NA LTS-031 chr3 98514784 105290880 6776097 * c(ZBTB11-AS1, MIR548G, MIR3921, TFG, FILIP1L, COL8A1, ZPLD1, DCBLD2, FAM172BP, LOC152225, ALCAM, ABI3BP, ZBTB11, PDCL3P4, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, NIT2, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, MIR548A3, CEP97, CMSS1, ADGRG7, NXPE3, TOMM70) 0.417730413440526 52 0.0658252634571302 1.01859610784055 2589 0.551338104754498 3 2 1 -6.76058743978781 LTS-031 chr3 105290881 105374269 83389 * ALCAM NA 0 NA 1.31 1 NA NA NA NA NA LTS-031 chr3 105374270 107880574 2506305 * c(LINC00882, LINC00635, LINC00636, DUBR, IFT57, BBX, CCDC54, CBLB, CD47) 0.420560129499541 16 0.062819019147601 1.20856131821391 650 0.50083044202185 5 3 2 -6.75790244157318 LTS-031 chr3 107880575 112968757 5088183 * c(PVRL3-AS1, CD96, HHLA2, CD200R1, DPPA2, CCDC80, BTLA, MYH15, PLCXD2, GCSAM, NEPRO, NECTIN3, MORC1, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, FLJ22763, LINC01205, CD200, TRAT1, SLC35A5, IFT57, DPPA4, ABHD10, KIAA1524, ATG3, LINC00488, MIR567, ZBED2, C3orf52, RETNLB, PHLDB2, BOC, GUCA1C, DZIP3) 0.394678090089011 62 0.0727158378377671 0.974949803109353 3148 0.524889095449292 3 2 1 -6.86134475725078 LTS-031 chr3 112968758 113005950 37193 * c(CFAP44, BOC) NA 0 NA 1.61732416693312 138 0.641139348736328 9 NA NA -5.76446808974548 LTS-031 chr3 113005951 116164345 3158395 * c(ZBTB20-AS1, MIR4796, MIR4446, CFAP44-AS1, SPICE1, DRD3, TIGIT, USF3, ZDHHC23, GAP43, ZBTB20, LSAMP, ATP6V1A, GRAMD1C, SIDT1, CFAP44, CCDC191, MIR568, ZNF80, QTRT2, NAA50, BOC) 0.411449631633194 35 0.055873160676962 0.995887433826761 1860 0.49634953682634 3 2 1 -6.78800825643367 LTS-031 chr3 116164346 116363133 198788 * LSAMP NA 0 NA 0.253 1 NA NA NA NA NA LTS-031 chr3 116363134 117716009 1352876 * TUSC7 NA 0 NA 0.488943654906603 40 0.310138007948653 0 NA NA -6.36519130608123 LTS-031 chr3 117716010 118753750 1037741 * c(IGSF11-AS1, IGSF11) 0.400399018940349 8 0.172022216173211 1.126459864289 127 0.629816317906032 4 3 1 -6.73454487265994 LTS-031 chr3 118753751 118823913 70163 * IGSF11 NA 0 NA 0.541 1 NA NA NA NA NA LTS-031 chr3 118823914 118931735 107822 * c(IGSF11, C3orf30, UPK1B, B4GALT4) 0.456013481731926 5 0.0203911745615597 0.575085469651032 141 0.273880009076664 0 0 0 -7.1488304278754 LTS-031 chr3 118931736 120959337 2027602 * c(COX17, FSTL1, LRRC58, ADPRH, GPR156, RABL3, GSK3B, GTF2E1, HGD, MIR198, NDUFB4, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, B4GALT4, NR1I2, MAATS1, CD80, STXBP5L) 0.437559542657936 39 0.0527206116048477 0.942430413856578 2025 0.440077919469614 3 2 1 -6.76553065589572 LTS-031 chr3 120959338 122060805 1101468 * c(POLQ, CSTA, GOLGB1, ILDR1, HCLS1, ARGFX, FBXO40, EAF2, SLC15A2, CASR, CD86, STXBP5L, IQCB1) 0.415240268128321 39 0.104513705846896 0.824304880287204 1571 0.487434546206606 1 1 0 -6.75093865444335 LTS-031 chr3 122060806 122078576 17771 * c(CCDC58, CSTA) NA 0 NA 0.947 1 NA NA NA NA NA LTS-031 chr3 122078577 123687731 1609155 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, CCDC58, DTX3L, PARP15, HACD2, FAM162A, SEC22A, KPNA1, MYLK, SEMA5B, WDR5B, PARP14, CCDC14, HSPBAP1, PARP9, DIRC2) 0.435616399323794 41 0.0487319822863894 1.06229271213494 2283 0.56645566479648 4 2 2 -6.73949126442848 LTS-031 chr3 123687732 123699233 11502 * ROPN1 NA 0 NA 0.474314380845128 76 0.265198356746516 0 NA NA -5.77389266270081 LTS-031 chr3 123699234 125690980 1991747 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.437351995778775 44 0.0539538797645642 1.00654792281443 1589 0.457315424253816 3 2 1 -6.75143310098482 LTS-031 chr3 125690981 125690988 8 * ROPN1B NA 0 NA 0.499 1 NA NA NA NA NA LTS-031 chr3 125690989 125725379 34391 * c(ROPN1B, SLC41A3) 0.409514940772653 2 0.00353553390593274 0.467954130910072 74 0.419210191606061 6 4 2 -6.8611409026402 LTS-031 chr3 125725380 125725455 76 * SLC41A3 0.439 1 NA 1.12 1 NA NA NA NA NA LTS-031 chr3 125725456 128808374 3082919 * c(ISY1-RAB43, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, C3orf22, DNAJB8, CHST13, KBTBD12, LINC01565, NUP210P1, GATA2, GP9, DNAJB8-AS1, ACAD9, KLF15, SEC61A1, RAB43, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, KIAA1257, EEFSEC, RPN1, TXNRD3NB, LOC653712, RAB7A, ZXDC, EFCC1, ABTB1, CHCHD6, RUVBL1, LOC90246) 0.451483600272972 43 0.0429087470786348 0.990622463811631 2743 0.460726510473873 4 2 2 -6.88407114231482 LTS-031 chr3 128808375 128840426 32052 * c(ISY1-RAB43, RAB43) 0.454 1 NA 0.615678544506594 64 0.353124095377406 0 0 0 -5.76479981388262 LTS-031 chr3 128840427 128846253 5827 * c(ISY1-RAB43, RAB43) NA 0 NA 1.509 1 NA NA NA NA NA LTS-031 chr3 128846254 129694919 848666 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, H1FX-AS1, IFT122, HMCES, ISY1, RHO, SNORA7B, TRH, CNBP, MBD4, H1FX, EFCAB12) 0.454652067428857 25 0.0452916475007626 1.13576235991854 1156 0.50849929245512 4 2 2 -6.80867133915799 LTS-031 chr3 129694920 129695517 598 * TRH NA 0 NA 0.774 1 NA NA NA NA NA LTS-031 chr3 129695518 133926299 4230782 * c(NPHP3-ACAD11, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, DNAJC13, COL6A5, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, RYK, ALG1L2, COL6A4P2, SLCO2A1, TMEM108, SNORA58, TF, TRH, FAM86HP, NEK11, UBA5, C3orf36, ACAD11, BFSP2) 0.43998371216435 44 0.0443616694535035 0.925812758410715 3235 0.425414389853067 2 1 1 -6.77812329247194 LTS-031 chr3 133926300 133926302 3 * RYK NA 0 NA 1.511 1 NA NA NA NA NA LTS-031 chr3 133926303 134090413 164111 * c(AMOTL2, RYK) 0.424704740627812 7 0.0400119029908899 1.53103186117508 124 0.602683416902858 10 6 4 -6.73940543878874 LTS-031 chr3 134090414 134093924 3511 * AMOTL2 NA 0 NA 1.074 1 NA NA NA NA NA LTS-031 chr3 134093925 145940191 11846267 * c(LOC100289361, LOC100507389, MIR4788, SLC9A9-AS1, STAG1, GRK7, PISRT1, DZIP1L, EPHB1, C3orf58, MRAS, U2SURP, ZBTB38, GK5, ANAPC13, ARMC8, PCOLCE2, SLC9A9, TRIM42, KY, PAQR9, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, ATP1B3, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, PIK3CB, PLOD2, PLS1, IL20RB, XRN1, ATR, MSL2, FAIM, SLC25A36, PPP2R3A, MRPS22, PLSCR4, RASA2, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, TFDP2, NA NA NA NA NA NA NA NA NA LTS-031 TRPC1, PRR23A, CEP63, CEP70, SLC35G2, ESYT3, SOX14, SPSB4, PXYLP1, COPB2, CHST2, RNF7) 0.430934430811686 118 0.0675239067337499 0.987903818383858 6338 0.516272710613498 3 2 1 -6.73390507447728 LTS-031 NA NA NA NA LTS-031 chr3 145940192 146113540 173349 * PLSCR4 NA 0 NA 0.739 1 NA NA NA NA NA LTS-031 chr3 146113541 148745467 2631927 * c(CPA3, CPB1, AGTR1, GYG1, PLSCR5, PLSCR1, PLSCR2, ZIC1, ZIC4) 0.457164587310981 6 0.0560871345913362 0.792766882054039 595 0.403005105600658 2 1 1 -6.89065274038917 LTS-031 chr3 148745468 148747918 2451 * HLTF NA 0 NA 2.165 1 NA NA NA NA NA LTS-031 chr3 148747919 150601499 1853581 * c(WWTR1-AS1, HLTF-AS1, RNF13, TM4SF18, CLRN1-AS1, ERICH6, CP, WWTR1, SERP1, ANKUB1, TM4SF1, COMMD2, SELENOT, PFN2, LOC646903, SIAH2, HLTF, TM4SF4, CLRN1, EIF2A, HPS3, TSC22D2) 0.461964352781664 20 0.0329709202017076 1.0356634445923 1574 0.639576252118617 4 2 2 -7.02931045734276 LTS-031 chr3 150601500 151102045 500546 * c(MED12L, CLRN1-AS1, GPR171, P2RY13, GPR87, P2RY12, CLRN1, P2RY14) 0.445459571376096 12 0.0603015151324801 0.735903695230036 539 0.332443427229675 0 0 0 -6.78480920898228 LTS-031 chr3 151102046 151102775 730 * c(MED12L, P2RY12) NA 0 NA 1.067 1 NA NA NA NA NA LTS-031 chr3 151102776 164905403 13802628 * c(TIPARP-AS1, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, MED12L, AADAC, OTOL1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, AADACP1, SLITRK3, PLCH1, TIPARP, ARHGEF26, IGSF10, C3orf33, TRIM59, SCHIP1, LINC00880, AADACL2, GPR149, IL12A, KPNA4, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, MBNL1, MLF1, MME, P2RY1, NMD3, RSRC1, SUCNR1, LXN, NA NA NA NA NA NA NA NA NA LTS-031 CCNL1, IFT80, PTX3, RAP2B, RARRES1, TMEM14EP, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, IQCJ, SSR3, SCARNA7, LINC00886, KCNAB1, VEPH1, ARL14, GFM1, B3GALNT1, GMPS, SLC33A1) 0.433324618999924 119 0.0516046180537391 0.939003981055278 5123 0.515430060530542 3 2 1 -6.82009058142293 LTS-031 NA NA NA NA LTS-031 chr3 164905404 167512574 2607171 * c(PDCD10, WDR49, SLITRK3, SERPINI1, SERPINI2, BCHE, ZBBX) 0.380655323600542 2 0.0275771644662754 0.725621316535465 511 0.35948769750619 2 2 0 -7.23275856858541 LTS-031 chr3 167512575 167524930 12356 * SERPINI1 NA 0 NA 0.942 1 NA NA NA NA NA LTS-031 chr3 167524931 172523607 4998677 * c(LOC100128164, LRRC34, ECT2, RPL22L1, MECOM, TNIK, GHSR, GPR160, GOLIM4, LRRIQ4, SAMD7, TMEM212, CLDN11, SERPINI1, PLD1, PRKCI, MYNN, EIF5A2, NCEH1, SLC7A14, LINC01330, FNDC3B, SKIL, SLC2A2, MIR551B, MIR569, TERC, SEC62, LRRC31, PHC3, ACTRT3, TNFSF10, EGFEM1P) 0.429748858709716 52 0.0500295840080457 1.12027217911431 2874 0.545600968558849 4 2 2 -6.75462034133635 LTS-031 chr3 172523608 175189447 2665840 * c(MIR4789, NAALADL2-AS3, ECT2, NLGN1, NAALADL2, SPATA16) 0.446811872023431 8 0.0606435722656809 0.918680920195578 388 0.461608207131293 2 1 1 -6.76170454560339 LTS-031 chr3 175189448 176737799 1548352 * NAALADL2 0.294 1 NA 1.03068209816222 103 0.541102955923542 3 3 0 -5.76991177332447 LTS-031 chr3 176737800 183756609 7018810 * c(LINC00578, LINC00888, ABCC5, ABCC5-AS1, LINC01014, KCNMB2, DNAJC19, TTC14, HTR3D, MCF2L2, ATP11B, LAMP3, KCNMB3, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, KLHL24, PARL, MFN1, YEATS2, MCCC1, MRPL47, GNB4, ZMAT3, SOX2, TBL1XR1, MAP6D1, FXR1, B3GNT5, ACTL6A, USP13, KLHL6) 0.312380680660268 72 0.0815813773281658 0.922693801585144 3966 0.56171721668679 3 3 0 -6.81592489296471 LTS-031 chr3 183756610 183756711 102 * HTR3D NA 0 NA 0.57 1 NA NA NA NA NA LTS-031 chr3 183756712 183854614 97903 * c(HTR3C, HTR3D, HTR3E, EIF2B5) 0.310221757280587 3 0.116199541020321 0.634761064643914 150 0.327170884205847 3 3 0 -6.85179164220211 LTS-031 chr3 183854615 183854699 85 * EIF2B5 NA 0 NA 0.967 1 NA NA NA NA NA LTS-031 chr3 183854700 184542727 688028 * c(MIR1224, ALG3, AP2M1, CLCN2, FAM131A, DVL3, EIF4G1, EPHB3, VPS8, POLR2H, ABCF3, PSMD2, MAGEF1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, CAMK2N2, ECE2) 0.350055382766811 40 0.0547265873134289 1.13395634739254 1853 0.552636004580926 5 4 1 -6.75607319154558 LTS-031 chr3 184542728 184543904 1177 * VPS8 NA 0 NA 0.907 1 NA NA NA NA NA LTS-031 chr3 184543905 186301853 1757949 * c(IGF2BP2, CRYGS, DGKG, EHHADH, LIPH, ETV5, VPS8, LOC253573, C3orf70, EHHADH-AS1, NMRAL1P1, DNAJB11, TBCCD1, SENP2, TRA2B, IGF2BP2-AS1, TMEM41A, MAP3K13) 0.348104910520664 35 0.0648879447829199 0.979689786950221 1816 0.426290118718303 3 3 0 -6.7946067422037 LTS-031 chr3 186301854 193036999 6735146 * c(MIR944, LOC100131635, SNAR-I, TPRG1-AS2, ADIPOQ-AS1, CLDN16, RPL39L, TMEM207, RTP1, MB21D2, CCDC50, PYDC2, AHSG, EIF4A2, FGF12, UTS2B, FETUB, TPRG1, HRG, LPP-AS2, RTP2, OSTN, ATP13A5, IL1RAP, KNG1, FLJ42393, LPP, DNAJB11, P3H2, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, GMNC, ST6GAL1, SST, SNORA81, MGC2889, TP63, CLDN1, ADIPOQ) 0.33376831130211 89 0.0983892879932993 0.821405560848403 3087 0.418278441514179 2 2 0 -6.89996786282165 LTS-031 chr3 193037000 193039436 2437 * ATP13A5 NA 0 NA 0.691 1 NA NA NA NA NA LTS-031 chr3 193039437 193209222 169786 * c(ATP13A5, ATP13A4) 0.391521209939363 5 0.073527545858678 0.598286002546481 228 0.222339007866811 1 1 0 -6.92437483642835 LTS-031 chr3 193209223 193210704 1482 * ATP13A4 NA 0 NA 1.057 1 NA NA NA NA NA LTS-031 chr3 193210705 195453067 2242363 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, MUC20, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, MIR570, SDHAP2, ATP13A3, ATP13A4, TMEM44) 0.394103304826376 46 0.064680709666009 0.888593014956977 1549 0.442893816335207 2 2 0 -6.8230090770633 LTS-031 chr3 195453068 195453157 90 * MUC20 NA 0 NA 1.848 1 NA NA NA NA NA LTS-031 chr3 195453158 195476016 22859 * c(MUC20, MUC4) 0.456446655928176 4 0.0474025315779653 2.01813219106217 69 1.33982215835807 12 6 6 -6.81634004251433 LTS-031 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.912 1 NA NA NA NA NA LTS-031 chr3 195477782 197770049 2292268 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, RPL35A, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.341368472597439 62 0.0894569624047587 0.799593936917445 3237 0.368759704534661 2 2 0 -6.87097217447628 LTS-031 chr3 197770050 197770512 463 * LMLN NA 0 NA 0.77447432041445 15 0.438955166384038 1 NA NA -5.7644105675992 LTS-031 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.29 1 NA 0.782493456770413 15 0.320384025521754 1 1 0 -5.76444213328171 LTS-031 chr4 60336 5858099 5797764 * c(MIR943, LOC100129917, LOC100130872, LOC100133461, TMED11P, STX18-AS1, MIR4800, HTT-AS, LINC01587, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, EVC2, OTOP1, CRMP1, CTBP1, ADRA2C, ZNF595, FAM53A, DGKQ, ZBTB49, ZNF721, EVC, FGFR3, ZNF718, GAK, NSG1, CRIPAK, DOK7, LINC00955, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, FAM86EP, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MSX1, NA NA NA NA NA NA NA NA NA LTS-031 MYL5, PDE6B, ATP5I, STX18, FGFRL1, CYTL1, PIGG, STK32B, LYAR, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, TMEM128, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.342403507497413 215 0.0698907232240744 0.98631187189965 7276 0.484129765751966 3 3 0 -6.76102809137002 LTS-031 NA NA NA NA LTS-031 chr4 5858100 5862803 4704 * CRMP1 NA 0 NA 0.709 1 NA NA NA NA NA LTS-031 chr4 5862804 6114819 252016 * c(MIR378D1, CRMP1, JAKMIP1) 0.327410127942177 11 0.0475885776975182 0.721808140775578 290 0.321097658509003 3 3 0 -6.8747447541463 LTS-031 chr4 6114820 6279088 164269 * c(JAKMIP1, LOC285484, WFS1) NA 0 NA 2.022 1 NA NA NA NA NA LTS-031 chr4 6279089 6594947 315859 * c(MAN2B2, PPP2R2C, WFS1) 0.379 1 NA 1.02316610836364 263 0.466742284502704 3 3 0 -5.76543585822961 LTS-031 chr4 6594948 6596360 1413 * MAN2B2 0.496 1 NA 1.11554611256923 5 0.233034761355468 4 4 0 -5.7644123396877 LTS-031 chr4 6596361 7436814 840454 * c(LOC100129931, MIR4798, MRFAP1L1, MAN2B2, CCDC96, BLOC1S4, TBC1D14, SORCS2, S100P, FLJ36777, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.429894006815944 18 0.0475878616368019 1.05937889138459 943 0.430069963762495 3 2 1 -6.74663788975796 LTS-031 chr4 7436815 7461736 24922 * SORCS2 NA 0 NA 1.474 1 NA NA NA NA NA LTS-031 chr4 7461737 8868854 1407118 * c(MIR4274, TRMT44, GPR78, HMX1, SH3TC1, SORCS2, AFAP1, ACOX3, ABLIM2, AFAP1-AS1, CPZ, HTRA3) 0.427633432143761 42 0.0503143717504826 1.2398631117106 1212 0.482776981017956 5 3 2 -6.74203204560006 LTS-031 chr4 8868855 11395487 2526633 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, CLNK, DRD5, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, ZNF518B, WDR1) 0.448354410250514 22 0.0374681394235352 0.879243843281693 662 0.369790178259041 2 1 1 -6.77320430948214 LTS-031 chr4 11395488 15530275 4134788 * c(MIR5091, C1QTNF7, CPEB2, LINC01085, BOD1L1, LINC01097, LINC01096, CPEB2-AS1, CC2D2A, NKX3-2, RAB28, HS3ST1) 0.458621430971041 14 0.0575870101347842 1.10963284614475 984 0.487951625995436 4 2 2 -6.80471999191273 LTS-031 chr4 15530276 36068765 20538490 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, ARAP2, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FBXL5, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, SLIT2, CD38, FGFBP1 NA NA NA NA NA NA NA NA NA LTS-031 ) 0.418675627580904 100 0.0801441094705549 0.927883539865681 4539 0.521804310968025 3 2 1 -6.91848136824903 LTS-031 NA NA NA NA LTS-031 chr4 36068766 37593437 1524672 * c(MIR4801, ARAP2, DTHD1, C4orf19, NWD2, RELL1) 0.443464950643629 17 0.0566138234002969 0.701678075949492 558 0.418375374506925 0 0 0 -6.77092481809777 LTS-031 chr4 37593438 37624698 31261 * c(C4orf19, RELL1) NA 0 NA 1.464 1 NA NA NA NA NA LTS-031 chr4 37624699 42067384 4442686 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, SLC30A9, PTTG2, LIAS, KLB, SMIM14, LIMCH1, TBC1D1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, PGM2, CHRNA9, N4BP2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.447983694508164 61 0.0445207325682687 0.917369513643785 3591 0.437846575426873 2 1 1 -6.79032391427434 LTS-031 chr4 42067385 49019232 6951848 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43) 0.425057511295354 73 0.0715999477053966 0.807430514908986 3428 0.393333412508285 1 1 0 -6.83211156664944 LTS-031 chr4 49019233 49064107 44875 * CWH43 NA 0 NA 0.66086134008338 42 0.443586889670527 0 NA NA -5.7644679200872 LTS-031 chr4 52709193 53728447 1019255 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, DCUN1D4, LRRC66, DANCR, SGCB, USP46, SNORA26) 0.496 1 NA 0.961386627911303 623 0.527727562176327 3 3 0 -5.7661238518707 LTS-031 chr4 53728448 57189687 3461240 * c(SRD5A3-AS1, LNX1-AS1, LNX1-AS2, NMU, PDCL2, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, KIAA1211, LOC644145, RASL11B, SRD5A3, FIP1L1, LNX1, CLOCK, CEP135) 0.433467062540231 33 0.0493544308900918 1.00882764727373 1728 0.443979386152952 3 2 1 -6.74371437080963 LTS-031 chr4 57189688 57190308 621 * KIAA1211 NA 0 NA 0.784 1 NA NA NA NA NA LTS-031 chr4 57190309 66467879 9277571 * c(THEGL, PAICS, ARL9, AASDH, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134, POLR2B, PPAT, KIAA1211, REST, SPINK2, SRP72, NOA1, HOPX) 0.45137748012689 31 0.0498923572486604 0.851558434004279 1563 0.433938154362213 2 1 1 -6.79328549575118 LTS-031 chr4 66467880 68605800 2137921 * c(EPHA5-AS1, CENPC, EPHA5, STAP1, GNRHR, UBA6-AS1, UBA6) 0.422697775124983 22 0.0698390852996933 1.10786431288759 504 0.446374641405356 4 2 2 -6.76436927352928 LTS-031 chr4 68605801 68904714 298914 * c(GNRHR, TMPRSS11A, UBA6-AS1, TMPRSS11GP, TMPRSS11D) 0.329490550334818 4 0.217346689262416 0.735279844150833 232 0.406117766449774 2 2 0 -6.78558012832437 LTS-031 chr4 68904715 68934560 29846 * c(TMPRSS11F, SYT14P1, UBA6-AS1, LOC550113) 0.441554412837329 8 0.0377829799172666 0.475085293585381 117 0.24350938576348 0 0 0 -6.76522180548726 LTS-031 chr4 68934561 68935610 1050 * c(TMPRSS11F, UBA6-AS1, LOC550113) NA 0 NA 1.002 1 NA NA NA NA NA LTS-031 chr4 68935611 69215809 280199 * c(FTLP10, TMPRSS11B, TMPRSS11F, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.482097054535375 2 0.0106066017177983 1.02005874373942 275 0.470742829296183 4 2 2 -11.1510787863899 LTS-031 chr4 69215810 69313079 97270 * character(0) NA 0 NA 0.622 1 NA NA NA NA NA LTS-031 chr4 69313080 71532361 2219282 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, UGT2A1, CSN1S1, CSN2, CSN3, AMBN, FDCSP, SMR3A, SULT1B1, CSN1S2AP, HTN1, HTN3, JCHAIN, PRR27, AMTN, MUC7, UGT2B28, ODAM, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17, CABS1) 0.433137325348438 32 0.0899143353510045 0.686794592856735 1328 0.509384977158296 0 0 0 -6.75316784378378 LTS-031 chr4 71532362 71554128 21767 * character(0) NA 0 NA 1.272 1 NA NA NA NA NA LTS-031 chr4 71554129 71896325 342197 * c(DCK, RUFY3, GRSF1, UTP3, MOB1B) 0.458643687865742 3 0.0398497176903426 1.0513937616494 530 0.521005918903221 4 2 2 -6.88194117444997 LTS-031 chr4 71896326 72102211 205886 * c(DCK, SLC4A4) NA 0 NA 0.641 1 NA NA NA NA NA LTS-031 chr4 72102212 73154543 1052332 * c(NPFFR2, GC, SLC4A4, ADAMTS3) 0.28 1 NA 0.699213574202541 328 0.331110968520642 0 0 0 -5.79833019130407 LTS-031 chr4 73154544 73156633 2090 * ADAMTS3 NA 0 NA 2.209 1 NA NA NA NA NA LTS-031 chr4 73156634 75314983 2158350 * c(PPBPP2, RASSF6, AFM, AFP, EREG, ALB, EPGN, ANKRD17, COX18, CXCL1, CXCL2, CXCL3, CXCL8, AREG, MTHFD2L, PF4, PF4V1, PPBP, CXCL6, CXCL5, LOC728040, ADAMTS3) 0.428113277422273 30 0.0918060737228959 0.991379620895772 1441 0.532663226802091 3 2 1 -6.73306994456281 LTS-031 chr4 75314984 75481958 166975 * AREG NA 0 NA 0.304 1 NA NA NA NA NA LTS-031 chr4 75481959 76454850 972892 * c(THAP6, PARM1, RCHY1, AREG, LOC441025, BTC) 0.435790066036939 16 0.0476577643202028 0.823532813376057 356 0.357348211014378 2 1 1 -6.75188744786664 LTS-031 chr4 76454851 76474986 20136 * THAP6 0.322 1 NA 0.796724262701107 27 0.85884614006683 1 1 0 -5.76444429846719 LTS-031 chr4 76474987 77950005 1475019 * c(FAM47E, MIR4450, FAM47E-STBD1, C4orf26, NAAA, CCDC158, SOWAHB, CXCL10, ART3, CXCL9, NUP54, PPEF2, SDAD1, SEPT11, SHROOM3, CXCL11, USO1, STBD1, CDKL2, SCARB2, G3BP2) 0.39621344815428 38 0.0613786373797943 0.742263336728352 1799 0.388263974833194 1 1 0 -6.80830830759032 LTS-031 chr4 77950006 77951900 1895 * SEPT11 NA 0 NA 1.406 1 NA NA NA NA NA LTS-031 chr4 77951901 78091197 139297 * c(CCNI, SEPT11, CCNG2) 0.367345883302482 6 0.180225876795389 1.01946616109123 338 0.423965995642332 2 2 0 -6.74394248641032 LTS-031 chr4 78091198 83277951 5186754 * c(LINC01094, LINC01088, LINC00989, CXCL13, PCAT4, ANTXR2, PAQR3, RASGEF1B, FGF5, CNOT6L, C4orf22, GK2, ANXA3, HNRNPD, BMP2K, PRKG2, PRDM8, MRPL1, BMP3, FRAS1, NAA11, CCNG2) 0.380362255248311 37 0.0931791599868547 0.720509384203245 2255 0.35710756149949 1 1 0 -6.89966309295505 LTS-031 chr4 83277952 83277957 6 * HNRNPD NA 0 NA 1.622 1 NA NA NA NA NA LTS-031 chr4 83277958 88401738 5123781 * c(THAP9-AS1, LOC100506746, MIR4451, MIR5705, CDS1, HPSE, HELQ, LIN54, C4orf36, SEC31A, WDFY3, COQ2, HNRNPD, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, PLAC8, NUDT9, MAPK10, KLHL8, PTPN13, ENOPH1, MIR575, THAP9, SCD5, ARHGAP24, SPARCL1, FAM175A, GPAT3, HNRNPDL) 0.408584240606394 31 0.0426630206775532 0.848721278890371 3172 0.452796822642221 1 1 0 -6.93208530347979 LTS-031 chr4 88401739 88403501 1763 * SPARCL1 NA 0 NA 0.653 1 NA NA NA NA NA LTS-031 chr4 88403502 88904569 501068 * c(DMP1, DSPP, IBSP, MEPE, SPP1, SPARCL1) 0.440116058423523 8 0.0333785110512737 0.611130986789182 377 0.290117851930758 0 0 0 -6.74595827753818 LTS-031 chr4 88904570 88928805 24236 * PKD2 NA 0 NA 1.608 1 NA NA NA NA NA LTS-031 chr4 88928806 90647549 1718744 * c(PYURF, FAM13A, PPM1K, TIGD2, NAP1L5, FAM13A-AS1, GPRIN3, HERC5, PKD2, HERC6, SNCA, HERC3, ABCG2) 0.386055928549847 34 0.0975946909809385 0.876166664246139 1308 0.893967105929244 2 2 0 -6.75108213459296 LTS-031 chr4 90647550 95129654 4482105 * c(MMRN1, GRID2, CCSER1, ATOH1, SMARCAD1, SNCA-AS1, SNCA) 0.376677792608202 7 0.0694906639841093 0.626980418517214 601 0.312074695246507 0 0 0 -7.20492038900506 LTS-031 chr4 95129655 110679254 15549600 * c(MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, STPG2-AS1, SEC24B, PDLIM5, CENPE, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SLC9B2, SLC9B1, SGMS2, EIF4E, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, HPGDS, RPL34-AS1, STPG2, H2AFZ, HADH, CFI, PCNAP1, MANBA, MTTP, NFKB1, CISD2, LEF1, PDHA2, EMCN, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, BDH2, SMARCAD1, INTS12, NA NA NA NA NA NA NA NA NA LTS-031 OSTC, RAP1GDS1, RPL34, SLC39A8, LEF1-AS1, ETNPPL, BMPR1B, TACR3, UBE2D3, GSTCD, DNAJB14, CXXC4, PLA2G12A, CASP6, C4orf17, COL25A1, UNC5C, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TRMT10A, TBCK) 0.389492670570498 159 0.0855224720471859 0.823722018454622 6865 0.460489457939157 2 2 0 -6.92262889202828 LTS-031 NA NA NA NA LTS-031 chr4 110679255 110681268 2014 * CFI NA 0 NA 0.522 1 NA NA NA NA NA LTS-031 chr4 110681269 113109964 2428696 * c(RRH, C4orf32, EGF, ENPEP, CFI, LRIT3, PITX2, GAR1, ELOVL6) 0.362854263588798 21 0.073503935754683 0.677976121136332 834 0.377482828145114 1 1 0 -7.18192422473652 LTS-031 chr4 113109965 119399900 6289936 * c(SNHG8, MIR1243, MIR1973, C4orf32, TRAM1L1, ANK2, MIR302B, LARP7, ZGRF1, AP1AR, NEUROG2, NDST4, SNORA24, MIR577, UGT8, ARSJ, ALPK1, CAMK2D, PRSS12, TIFA, NDST3) 0.380086449394558 19 0.0628599575962778 0.861771416663179 1989 0.464021832592271 2 2 0 -6.75528982375704 LTS-031 chr4 119399901 119476651 76751 * CEP170P1 0.244546275501716 2 0.0544472221513641 0.396032876729377 179 0.247794773734539 5 5 0 -7.64717654234489 LTS-031 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.585 1 NA NA NA NA NA LTS-031 chr4 119476981 122053533 2576553 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, TNIP3, PDE5A, SEC24D) 0.377905291087977 33 0.0405500765982163 0.972005623763463 1337 0.455979640510091 2 2 0 -6.84244213172116 LTS-031 chr4 122053534 122251742 198209 * c(TNIP3, QRFPR) 0.366 1 NA 0.507294769540399 106 0.211462674940713 0 0 0 -5.91858958521393 LTS-031 chr4 122251743 122253969 2227 * QRFPR NA 0 NA 0.861 1 NA NA NA NA NA LTS-031 chr4 122253970 144616706 22362737 * c(SCOC-AS1, PP12613, MIR2054, LINC00499, SPRY1, PGRMC2, CLGN, PLK4, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, MGAT4D, SPATA5, BBS12, FREM3, ELF2, FGF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, LINC01091, ANXA5, IL2, IL15, MGST2, GUSBP5, NDUFC1, EXOSC9, PCDH18, LARP1B, BBS7, MAML3, ANKRD50, RNF150, PCDH10, IL21, SCOC, SLC7A11-AS1, LINC00616, TNRC18P1, TRPC3, CETN4P, NA NA NA NA NA NA NA NA NA LTS-031 UCP1, FAT4, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, INPP4B, CCNA2) 0.374570532920166 77 0.094845438536652 0.840893705212459 6491 0.514925983112924 2 2 0 -6.81347824142166 LTS-031 NA NA NA NA LTS-031 chr4 144616707 145581416 964710 * c(FREM3, GYPA, GYPB, GYPE, HHIP, HHIP-AS1) 0.3702921891719 9 0.0750662670208426 0.631796838120022 325 0.29651002080983 1 1 0 -7.18192496801515 LTS-031 chr4 145581417 145627661 46245 * HHIP NA 0 NA 1.034 1 NA NA NA NA NA LTS-031 chr4 145627662 153273848 7646187 * c(LINC01095, MIR4799, ANAPC10, MAB21L2, LSM6, ZNF827, SH3D19, DCLK2, MMAA, EDNRA, PRSS48, SMAD1, NR3C2, GATB, POU4F2, OTUD4, FBXW7, TMEM184C, ABCE1, RPS3A, HHIP, C4orf51, FAM160A1, ARHGAP10, TTC29, SLC10A7, SNORD73A, PRMT9, LRBA) 0.343223273629614 32 0.131907191071797 0.897112562218857 2909 0.430609245997317 2 2 0 -6.77156299943412 LTS-031 chr4 153273849 156846187 3572339 * c(MIR3140, CTSO, RBM46, TIGD4, TMEM154, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, RNF175, GUCY1A3, GUCY1B3, ANXA2P1, NPY2R, ASIC5, PLRG1, DKFZP434I0714, DCHS2, FBXW7, SFRP2, TDO2, TLR2, MAP9, MND1, FHDC1, LRAT) 0.366282003428554 58 0.0678581756490686 0.761809570921303 2661 0.364620498011269 2 2 0 -7.02800640691643 LTS-031 chr4 156846188 159176408 2330221 * c(CTSO, GLRB, GRIA2, LOC340017, FAM198B, TMEM144, PDGFC) 0.356505025442276 9 0.0645292784538753 1.01472508253487 677 1.65056954652679 5 4 1 -6.75079110905367 LTS-031 chr4 159176409 159200401 23993 * TMEM144 NA 0 NA 0.34 1 NA NA NA NA NA LTS-031 chr4 159200402 164534165 5333764 * c(MIR3688-1, MIR3688-2, C4orf45, C4orf46, ETFDH, NPY1R, NPY5R, PPID, MARCH1, TMA16, FSTL5, FNIP2, RXFP1, TKTL2, NAF1, RAPGEF2) 0.344463347754083 29 0.0697076937043276 0.785210063028568 1380 0.404540118122675 2 2 0 -7.02749117895052 LTS-031 chr4 164534166 164534418 253 * MARCH1 NA 0 NA 0.571 1 NA NA NA NA NA LTS-031 chr4 164534419 165962673 1428255 * c(LINC01207, APELA, FAM218A, TRIM60, ANP32C, TRIM61, MARCH1) NA 0 NA 0.534645877121797 155 0.288787919161926 0 NA NA -6.11899097646616 LTS-031 chr4 165962674 165962724 51 * TRIM60 NA 0 NA 1.153 1 NA NA NA NA NA LTS-031 chr4 165962725 169137975 3175251 * c(ANXA10, KLHL2, CPE, TRIM60, TMEM192, GK3P, SPOCK3, DDX60, MSMO1, MIR578, TLL1) 0.308118154301313 7 0.14735751794611 0.766618237562853 777 0.405283910921243 2 2 0 -7.02997149674216 LTS-031 chr4 169137976 169138079 104 * DDX60 NA 0 NA 1.602 1 NA NA NA NA NA LTS-031 chr4 169138080 170511994 1373915 * c(PALLD, NEK1, DDX60, SH3RF1, CBR4, DDX60L) 0.321519546011787 17 0.0866414603239051 1.05375200688049 1050 0.666270342839946 3 3 0 -6.74324077084789 LTS-031 chr4 170511995 170520225 8231 * NEK1 NA 0 NA 0.909 1 NA NA NA NA NA LTS-031 chr4 170520226 175241448 4721223 * c(LOC100506085, LOC100506122, SCRG1, CLCN3, FBXO8, HMGB2, GALNTL6, NEK1, AADAT, GALNT7, HPF1, HAND2-AS1, CEP44, SAP30, HAND2, MFAP3L) 0.404855679020177 12 0.145087016732175 0.830932114091397 1009 0.731337384820384 1 1 0 -6.77808320246452 LTS-031 chr4 175241449 175252608 11160 * CEP44 NA 0 NA 0.381 1 NA NA NA NA NA LTS-031 chr4 175252609 183717922 8465314 * c(MIR1305, MIR4276, ADAM29, WDR17, SPATA4, ASB5, AGA, GPM6A, LINC01098, HPGD, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, GLRA3, CEP44, LOC90768) 0.401200406682247 16 0.0661356875421029 0.640645822975244 1420 0.419001531579942 0 0 0 -6.923258339538 LTS-031 chr4 183717923 183720714 2792 * TENM3 NA 0 NA 1.357 1 NA NA NA NA NA LTS-031 chr4 183720715 187130147 3409433 * c(CLDN24, MIR3945, LINC01093, ENPP6, WWC2-AS2, DCTD, RWDD4, PRIMPOL, ACSL1, CCDC110, FAM149A, PDLIM3, CYP4V2, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, CLDN22, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, FLJ38576, TLR3, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.41320369048463 84 0.0539991433921986 0.804603277057912 2729 0.405845080813729 1 1 0 -6.77492658844311 LTS-031 chr4 187130148 190946065 3815918 * c(ZFP42, TRIML2, F11, FAT1, FRG1, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A) 0.341530728157267 26 0.0676851989274328 0.682485887606605 911 0.279815468201668 1 1 0 -7.73704952757318 LTS-031 chr4 190946066 190981567 35502 * character(0) NA 0 NA 0.491244356330575 17 0.553432936050866 0 NA NA -5.76970507061152 LTS-031 chr5 140347 163266 22920 * PLEKHG4B 0.47 1 NA 1.05107896952872 73 0.457373476029538 4 4 0 -5.76455931211003 LTS-031 chr5 163267 251727 88461 * c(CCDC127, PLEKHG4B, LRRC14B, SDHA) 0.420003285466373 10 0.0538063399816622 1.16643185468579 344 0.528267558716648 8 5 3 -6.74920741358077 LTS-031 chr5 251728 256416 4689 * SDHA NA 0 NA 0.523 1 NA NA NA NA NA LTS-031 chr5 256417 677925 421509 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, PP7080, CEP72, AHRR, SDHA, SLC9A3) 0.398738291067296 16 0.089315078980726 0.86996860452828 689 0.434792695401672 1 1 0 -6.78329091754983 LTS-031 chr5 677926 840867 162942 * c(TPPP, ZDHHC11) 0.371749611171704 10 0.135914352115997 0.57833555983054 167 0.388864885364224 2 2 0 -6.84204262050217 LTS-031 chr5 840868 843710 2843 * ZDHHC11 NA 0 NA 1.214 1 NA NA NA NA NA LTS-031 chr5 843711 1160540 316830 * c(LOC100506688, MIR4635, SLC12A7, BRD9, ZDHHC11, NKD2, TRIP13) 0.451006163184871 17 0.0566712656726597 0.987449829151332 505 0.433626765536949 4 2 2 -6.77359949573608 LTS-031 chr5 1160541 1201693 41153 * character(0) NA 0 NA 0.722 1 NA NA NA NA NA LTS-031 chr5 1201694 3611133 2409440 * c(MIR4277, MIR4457, C5orf38, IRX2, LINC01019, SLC6A19, SLC6A18, NDUFS6, IRX4, MRPL36, SLC6A3, TERT, SDHAP3, LOC728613, IRX1, LPCAT1, CLPTM1L) 0.428753774047914 23 0.0697021046971287 0.776663272620302 1024 0.369267991696371 1 1 0 -6.75283084209038 LTS-031 chr5 3611134 11397386 7786253 * c(SNORD123, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, MIR4458, MIR4454, MIR4636, MARCH6, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, DAP, ADAMTS16, CCT5, ICE1, LINC01018, LOC285692, LINC01020, FLJ33360, LOC442132, MTRR, TAS2R1, NSUN2, ANKRD33B, SRD5A1, LOC729506, FASTKD3, ROPN1L, MED10, SEMA5A) 0.445069148527904 55 0.051934172267961 0.921532260537649 2362 0.488424122614539 2 1 1 -6.79452310897531 LTS-031 chr5 11397387 11411620 14234 * CTNND2 NA 0 NA 0.744 1 NA NA NA NA NA LTS-031 chr5 11411621 13944681 2533061 * c(CTNND2, DNAH5, LINC01194) 0.405533113220099 17 0.0775257073113019 0.700640138765439 508 0.257758913099625 1 1 0 -6.9004073738069 LTS-031 chr5 13944682 14143929 199248 * TRIO NA 0 NA 1.364 1 NA NA NA NA NA LTS-031 chr5 14143930 19473397 5329468 * c(LOC100130744, MIR4637, CDH18, BASP1, FBXL7, LOC285696, LOC401177, MARCH11, MYO10, FAM134B, FAM105A, ANKH, TRIO, OTULIN, ZNF622) 0.44789611383503 12 0.0394918480272329 1.04449008305116 1548 0.450185721589918 4 2 2 -6.81120671770786 LTS-031 chr5 19473398 31324724 11851327 * c(CDH6, CDH9, CDH10, CDH12, CDH18, LOC340107, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.423452977573023 6 0.0286356421265527 0.655365014338015 590 0.307426578167863 0 0 0 -6.90982924218776 LTS-031 chr5 31324725 34905754 3581030 * c(CDH6, MIR4279, SUB1, C1QTNF3, TTC23L, PDZD2, AMACR, RAI14, DROSHA, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, RAD1, GOLPH3, TARS, ADAMTS12) 0.437600336250516 45 0.0405058668901834 0.965637599623671 2329 0.546989187130349 3 2 1 -6.76795686324215 LTS-031 chr5 34905755 34905853 99 * RAD1 NA 0 NA 1.007 1 NA NA NA NA NA LTS-031 chr5 34905854 34949857 44004 * c(DNAJC21, BRIX1, RAD1) 0.227 1 NA 1.34978003020025 196 0.637463795382814 6 6 0 -5.76442453509919 LTS-031 chr5 34949858 34950299 442 * DNAJC21 NA 0 NA 0.902 1 NA NA NA NA NA LTS-031 chr5 34950300 36105337 1155038 * c(UGT3A1, CAPSL, DNAJC21, UGT3A2, IL7R, PRLR, AGXT2, SPEF2, LMBRD2) 0.432945026720249 27 0.0543933913783745 0.778788400587935 1276 0.368546974955413 1 1 0 -6.78345239974225 LTS-031 chr5 36105338 36108566 3229 * LMBRD2 NA 0 NA 1.4 1 NA NA NA NA NA LTS-031 chr5 36108567 39122504 3013938 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NADK2, RANBP3L, RICTOR, FYB, NIPBL, GDNF, LIFR, WDR70, NIPBL-AS1, SKP2, SLC1A3, C5orf42, MIR580, OSMR, LMBRD2, NUP155) 0.448624069229492 23 0.0393456357348995 0.988226793778162 2463 0.547538972092338 4 2 2 -6.84247197018764 LTS-031 chr5 39122505 39124285 1781 * FYB NA 0 NA 0.615 1 NA NA NA NA NA LTS-031 chr5 39124286 40767786 1643501 * c(DAB2, TTC33, FYB, PRKAA1, PTGER4, C9) 0.436873707074149 2 0.0205060966544099 0.761341630351386 479 0.312036301905289 2 1 1 -6.92718300754894 LTS-031 chr5 40767787 40768495 709 * PRKAA1 NA 0 NA 3.943 1 NA NA NA NA NA LTS-031 chr5 40768496 41921772 1153277 * c(LOC100506548, MROH2B, C5orf51, PLCXD3, OXCT1, PRKAA1, RPL37, SNORD72, C6, C7, CARD6) 0.42600376132277 28 0.0931009863040862 1.02025991144649 1185 0.508234956422977 3 2 1 -6.73607562139577 LTS-031 chr5 41921773 41925333 3561 * character(0) NA 0 NA 0.375 1 NA NA NA NA NA LTS-031 chr5 41925334 44809162 2883829 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, MRPS30, LOC153684, NIM1K, FGF10, NNT, FBXO4, GHR, HMGCS1, C5orf34, ANXA2R, CCL28, SELENOP, TMEM267, LOC648987, ZNF131) 0.437774926697457 19 0.0605826485880365 0.861544815944843 1105 0.579222127580225 2 1 1 -6.73437615407476 LTS-031 chr5 44809163 45696274 887112 * c(MRPS30, HCN1) NA 0 NA 0.830705148002406 155 0.373990190162339 2 NA NA -5.77461322084086 LTS-031 chr5 49692017 49737060 45044 * EMB NA 0 NA 0.51838833160931 99 0.253284341273852 0 NA NA -5.78515058600295 LTS-031 chr5 49737061 49737131 71 * EMB NA 0 NA 0.739 1 NA NA NA NA NA LTS-031 chr5 49737132 50139286 402155 * c(EMB, PARP8) 0.484 1 NA 0.741813367370671 165 0.442127743376747 1 1 0 -5.76522780273383 LTS-031 chr5 50139287 68706460 18567174 * c(LRRC70, FAM159B, LOC100303749, MIR449C, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, FLJ31104, NDUFS4, NA NA NA NA NA NA NA NA NA LTS-031 GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.436205913933847 174 0.0602408441593373 0.842396291578013 8053 0.471797358533691 2 1 1 -6.80487542644772 LTS-031 NA NA NA NA LTS-031 chr5 68706461 68709888 3428 * RAD17 NA 0 NA 0.315 1 NA NA NA NA NA LTS-031 chr5 68709889 70201051 1491163 * c(GUSBP9, NA, OCLN, SMA4, SMA5, MARVELD2, LOC441081, RAD17, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.435580190833478 5 0.0190918830920368 0.592261616639649 232 0.464851741272831 0 0 0 -6.78174319429384 LTS-031 chr5 70201052 70213051 12000 * c(GUSBP9, SMN1, SMN2, SERF1A) NA 0 NA 0.301 1 NA NA NA NA NA LTS-031 chr5 70213052 70357226 144175 * c(GUSBP9, GTF2H2, NAIP, SMN1, SMN2, SERF1A) 0.35 1 NA 0.291790446251617 62 0.18483886103268 0 0 0 -7.05204267190322 LTS-031 chr5 70357227 70369072 11846 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 1.304 1 NA NA NA NA NA LTS-031 chr5 70369073 72876257 2507185 * c(GUSBP9, MIR4804, MIR4803, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, TNPO1, MAP1B, NAIP, PMCHL2, BDP1, ANKRA2, MCCC2, LOC647859, BTF3, PTCD2, UTP15, CARTPT) 0.4289811964345 40 0.0608228828396277 0.851787684877705 1592 0.43085466656682 2 1 1 -6.7539826283645 LTS-031 chr5 72876258 73932342 1056085 * c(ARHGEF28, UTP15, ENC1) 0.400372833176682 10 0.0432883099436531 1.08002370677852 322 0.636407552272551 4 3 1 -6.74589504204747 LTS-031 chr5 73932343 73980876 48534 * c(HEXB, ENC1) NA 0 NA 0.762 1 NA NA NA NA NA LTS-031 chr5 73980877 76331877 2351001 * c(NCRUPAR, COL4A3BP, NSA2, IQGAP2, POC5, CRHBP, S100Z, F2R, F2RL1, F2RL2, SV2C, ANKRD31, FAM169A, HEXB, HMGCR, GCNT4, POLK, AGGF1, ANKDD1B, GFM2) 0.433105267210036 51 0.0810975495870227 0.702816494560118 1959 0.45130085785435 0 0 0 -6.78221788740384 LTS-031 chr5 76331878 82135960 5804083 * c(CKMT2-AS1, MTRNR2L2, LHFPL2, CKMT2, JMY, ACOT12, PAPD4, FAM151B, DHFR, CMYA5, OTP, SSBP2, BHMT2, SERINC5, RNU5E-1, DMGDH, ANKRD34B, MTX3, ARSB, CRSP8P, MSH3, AGGF1, WDR41, RASGRF2, RPS23, BHMT, LOC644936, SNORA47, TBCA, THBS4, ZBED3-AS1, ATG10, ZCCHC9, ZBED3, SPZ1, AP3B1, PDE8B, ATP6AP1L, HOMER1, SCAMP1, ZFYVE16) 0.425798000385218 81 0.0717451852387202 0.856262950033101 3802 0.647419072011244 2 1 1 -6.75609672064936 LTS-031 chr5 82135961 86534704 4398744 * c(MIR4280, MIR3607, MIR3977, EDIL3, COX7C, HAPLN1, VCAN, TMEM167A, NBPF22P, SCARNA18, XRCC4) 0.402567212514488 18 0.0593924853854546 0.670407478539043 781 0.302830621001118 0 0 0 -6.98219233042054 LTS-031 chr5 86534705 86563680 28976 * character(0) NA 0 NA 2.99 1 NA NA NA NA NA LTS-031 chr5 86563681 89807870 3244190 * c(MIR3660, TMEM161B-AS1, POLR3G, CETN3, MBLAC2, TMEM161B, MIR9-2, MEF2C, RASA1, LINC00461, CCNH) 0.431105462461989 7 0.0805292020384679 0.860027114748302 840 0.491692206792292 2 1 1 -6.74066825195562 LTS-031 chr5 89807871 89807965 95 * POLR3G NA 0 NA 0.532 1 NA NA NA NA NA LTS-031 chr5 89807966 90665245 857280 * c(POLR3G, LYSMD3, ARRDC3, ADGRV1) 0.408452635951163 23 0.0559969296165621 0.661246988036838 779 0.319288088767914 1 1 0 -6.84705821074565 LTS-031 chr5 90665246 93073682 2408437 * c(ARRDC3-AS1, MIR2277, NR2F1-AS1, ARRDC3, NR2F1, FAM172A) NA 0 NA 1.09279509654536 225 0.736734856841805 4 NA NA -5.76461241088145 LTS-031 chr5 93073683 93076259 2577 * c(POU5F2, FAM172A) NA 0 NA 0.579 1 NA NA NA NA NA LTS-031 chr5 93076260 95066931 1990672 * c(POU5F2, ARSK, FAM81B, RHOBTB3, KIAA0825, GPR150, RFESD, MCTP1, SPATA9, FAM172A, SLF1, TTC37) 0.432207375363976 15 0.0461491371224084 0.702711570273062 1142 0.328058868851814 0 0 0 -6.81853807401722 LTS-031 chr5 95066932 95066945 14 * RHOBTB3 NA 0 NA 0.851 1 NA NA NA NA NA LTS-031 chr5 95066946 101569784 6502839 * c(LOC100133050, LOC100289230, CHD1, LIX1, LINC01554, RHOBTB3, ELL2, GLRX, RGMB, FAM174A, SLCO4C1, LNPEP, RGMB-AS1, PCSK1, ERAP1, RIOK2, ERAP2, MIR583, ST8SIA4, CAST) 0.420898410544503 58 0.0582305455129179 0.819536159267127 2099 0.395393317785645 1 1 0 -6.86832241683909 LTS-031 chr5 101569785 101569928 144 * SLCO4C1 NA 0 NA 0.651 1 NA NA NA NA NA LTS-031 chr5 101569929 101816178 246250 * c(SLCO6A1, SLCO4C1) 0.374050564879459 4 0.0749688824335359 0.548096087678591 183 0.42872152686917 2 2 0 -6.90648145046073 LTS-031 chr5 101816179 101834162 17984 * SLCO6A1 NA 0 NA 1.262 1 NA NA NA NA NA LTS-031 chr5 101834163 121496061 19661899 * c(LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, SLCO6A1, ZNF474, STARD4, WDR36, SRFBP1, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, APC, HSD17B4, FAM170A, TICAM2, KCNN2, LOX, MAN2A1, MCC, PAM, TMED7, PRR16, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, NA NA NA NA NA NA NA NA NA LTS-031 LINC00992, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, FTMT, PJA2) 0.422578782307546 157 0.0661967691726537 0.825542680291445 6212 0.408899792428035 2 1 1 -6.99710388725433 LTS-031 NA NA NA NA LTS-031 chr5 121496062 121515276 19215 * LOC100505841 NA 0 NA 2.195 1 NA NA NA NA NA LTS-031 chr5 121515277 125936195 4420919 * c(LOC100505841, CSNK1G3, MGC32805, CEP120, SNX24, ALDH7A1, PPIC, ZNF608, GRAMD3, SNX2, PRDM6, SNCAIP) 0.421076184430128 15 0.123383181689441 1.02135847656297 1161 0.487019199634183 3 2 1 -6.7469709608328 LTS-031 chr5 125936196 132272943 6336748 * c(KIAA1024L, MIR3936, MIR4633, MIR4460, RAD50, KIF3A, MARCH3, LEAP2, PRRC1, SOWAHA, SHROOM1, CSF2, ADAMTS19, FBN2, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, SLC27A6, HINT1, CHSY3, IL3, IL4, IL5, IL13, IRF1, TEX43, LMNB1, C5orf63, C5orf56, ISOC1, RAPGEF6, PHAX, LOC553103, CDC42SE2, CTXN3, LINC01184, CCNI2, SLC12A2, SLC22A4, SLC22A5, MEIKIN, MEGF10, PDLIM4, P4HA2, LYRM7, FNIP1) 0.435286787290644 84 0.0699413439601444 0.860827831798433 4482 0.475709936089123 2 1 1 -6.73883330670546 LTS-031 chr5 132272944 132332682 59739 * c(AFF4, ZCCHC10) NA 0 NA 0.434 1 NA NA NA NA NA LTS-031 chr5 132332683 132334583 1901 * ZCCHC10 NA 0 NA 0.403811465572067 49 0.121339445583132 0 NA NA -5.78161388334092 LTS-031 chr5 132334584 132335813 1230 * ZCCHC10 NA 0 NA 0.646 1 NA NA NA NA NA LTS-031 chr5 132335814 136320928 3985115 * c(VTRNA2-1, MIR1289-2, MIR3661, MIR4461, C5orf66, SEC24A, C5orf24, DCANP1, SLC25A48, FSTL4, JADE2, FBXL21, HSPA4, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, SAR1B, CDKL3, PITX1, ZCCHC10, PPP2CA, C5orf15, TRPC7, SKP1, SPOCK1, TCF7, TGFBI, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, CXCL14, H2AFY, SMAD5-AS1, DDX46) 0.44430749591598 30 0.0334316939582717 0.839340531976873 2958 0.495549593257381 2 1 1 -6.76681186700642 LTS-031 chr5 136320929 136324118 3190 * SPOCK1 NA 0 NA 1.157 1 NA NA NA NA NA LTS-031 chr5 136324119 140166025 3841907 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SPOCK1, SNHG4, NA NA NA NA NA NA NA NA NA LTS-031 UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.429981644112978 74 0.088533321517279 0.96604718280434 4603 0.51051579222749 3 2 1 -6.73794446068205 LTS-031 NA NA NA NA LTS-031 chr5 140166026 140166220 195 * PCDHA1 NA 0 NA 0.782 1 NA NA NA NA NA LTS-031 chr5 140166221 140871400 705180 * c(PCDHGA12, PCDHB5, PCDHB1, PCDHGC3, PCDHB18P, PCDHB17P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, NA NA NA NA NA NA NA NA NA LTS-031 PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8, PCDHA9) 0.429811535338612 81 0.0493920540168153 0.706386401347127 2909 0.361684790751155 0 0 0 -6.77690886553929 LTS-031 NA NA NA NA LTS-031 chr5 140871401 141014496 143096 * c(LOC100505658, DIAPH1, PCDHGA12, PCDHGC3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB4, HDAC3, PCDHGA8) 0.351612603983933 5 0.187790574843361 1.18577330534597 342 0.544935523811671 5 4 1 -6.73417454231438 LTS-031 chr5 141014497 141016107 1611 * HDAC3 NA 0 NA 0.894 1 NA NA NA NA NA LTS-031 chr5 141016108 147207745 6191638 * c(GNPDA1, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DPYSL3, STK32A, FGF1, ARHGAP26, RELL2, NR3C1, PCDH1, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, HMHB1, GRXCR2, ARAP3, SPINK1, LOC729080, NDFIP1, YIPF5, SPRY4, HDAC3, FCHSD1, RNF14, KIAA0141, JAKMIP2) 0.43629029643076 65 0.0535659281058973 0.897262316565462 3336 0.417260971688726 2 1 1 -6.74777611170511 LTS-031 chr5 147207746 147209016 1271 * SPINK1 NA 0 NA 0.675 1 NA NA NA NA NA LTS-031 chr5 147209017 148408314 1199298 * c(SPINK5, SCGB3A2, SPINK13, ADRB2, HTR4, C5orf46, SPINK6, SPINK14, SPINK9, SPINK1, SH3TC2, FBXO38, SPINK7) 0.439804740348629 27 0.0411960430152455 0.684537544738051 798 0.294002781439232 0 0 0 -6.75921772732518 LTS-031 chr5 148408315 148411024 2710 * SH3TC2 NA 0 NA 0.936 1 NA NA NA NA NA LTS-031 chr5 148411025 150632967 2221943 * c(TNIP1, CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, ZNF300P1, CSF1R, CSNK1A1, SLC26A2, ABLIM3, HMGXB3, CCDC69, IL17B, GM2A, GPX3, ANXA6, NDST1, ARSI, IRGM, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, SMIM3, ZNF300, MYOZ3, CD74) 0.442584802364794 82 0.0420744311154488 1.03588867422013 4110 0.751338932397378 4 2 2 -6.74736807988479 LTS-031 chr5 150632968 150948547 315580 * c(SLC36A2, SLC36A1, FAT2, GM2A, SLC36A3) 0.443620494796325 32 0.0364405033205918 0.749774802579496 783 0.35444761921354 0 0 0 -6.77620920598357 LTS-031 chr5 150948548 151040665 92118 * SPARC NA 0 NA 1.993 1 NA NA NA NA NA LTS-031 chr5 151040666 156194465 5153800 * c(MIR3141, LOC100652758, G3BP1, FAXDC2, FAM114A2, LARP1, GEMIN5, GLRA1, KIF4B, GRIA1, MRPL22, SAP30L-AS1, MFAP3, ATOX1, GALNT10, NMUR2, SGCD, SPARC, SAP30L, CNOT8, HAND1) 0.422610872635182 43 0.0568790852888837 0.947770953531118 2244 0.413882521767512 3 2 1 -6.77117002690951 LTS-031 chr5 156194466 156277527 83062 * SGCD NA 0 NA 0.739 1 NA NA NA NA NA LTS-031 chr5 156277528 156681425 403898 * c(PPP1R2P3, FAM71B, HAVCR1, ITK, HAVCR2, TIMD4, MED7) 0.422516949637179 17 0.0685344481865528 0.646786291521884 457 0.315186392114197 0 0 0 -6.76633447061219 LTS-031 chr5 156681426 159849293 3167868 * c(C5orf52, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, CYFIP2, LOC285626, LOC285627, NIPAL4, IL12B, ITK, FNDC9, THG1L, ZBED8, TTC1, CCNJL, ADAM19, PTTG1, CLINT1) 0.419041647038192 27 0.0931535509016379 0.932496481516582 1993 0.508198375763557 3 2 1 -6.76408785756938 LTS-031 chr5 159849294 159849400 107 * PTTG1 NA 0 NA 0.49 1 NA NA NA NA NA LTS-031 chr5 159849401 162870922 3021522 * c(MIR3142, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, LOC285629, MIR146A, CCNG1, PTTG1) 0.413687604468877 22 0.102504904327819 0.65114708303085 788 0.327853076503631 0 0 0 -6.76912254914608 LTS-031 chr5 162870923 168727622 5856700 * c(MIR103B1, NUDCD2, WWC1, MAT2B, HMMR, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, MIR585, PANK3, CCNG1) 0.441300112497196 33 0.0392199508599201 0.941794051827302 1313 0.440275174478707 2 1 1 -6.83260137921221 LTS-031 chr5 168727623 169015342 287720 * c(SPDL1, SLIT3) NA 0 NA 0.58 1 NA NA NA NA NA LTS-031 chr5 169015343 169683616 668274 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, LCP2, SPDL1) 0.372768709474629 6 0.185072958586607 0.69878554098582 617 0.263582412561436 1 1 0 -6.80982651279776 LTS-031 chr5 169683617 169685007 1391 * LCP2 NA 0 NA 1.39 1 NA NA NA NA NA LTS-031 chr5 169685008 171766289 2081282 * c(MIR3912, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, TLX3, KCNIP1, KCNMB1, LCP2, NPM1, RANBP17, STK10, FGF18, UBTD2) 0.446676909129837 17 0.0456597067832177 0.87827862207586 1202 0.431575953502813 2 1 1 -6.75157053200015 LTS-031 chr5 171766290 173416600 1650311 * c(LOC100268168, C5orf47, NKX2-5, CREBRF, DUSP1, SH3PXD2B, LOC285593, RPL26L1, NEURL1B, ERGIC1, BNIP1, SNORA74B, CPEB4, STC2, ATP6V0E1, BOD1) 0.417591984172334 19 0.11023173357849 1.09907852483721 1278 0.685190961834422 4 2 2 -6.75488578329396 LTS-031 chr5 173416601 173425102 8502 * C5orf47 NA 0 NA 0.592 1 NA NA NA NA NA LTS-031 chr5 173425103 175386684 1961582 * c(MIR4634, CPLX2, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.4503703402423 13 0.0354390050216295 0.736836000959978 503 0.290358101872352 0 0 0 -7.02231042262245 LTS-031 chr5 175386685 175394264 7580 * THOC3 NA 0 NA 0.245641761045034 73 0.242908897523732 0 NA NA -5.83593281488821 LTS-031 chr5 175394265 175395032 768 * THOC3 NA 0 NA 3.895 1 NA NA NA NA NA LTS-031 chr5 175395033 175740714 345682 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) NA 0 NA 0.688424485054399 140 0.632597323654764 0 NA NA -5.7663641802632 LTS-031 chr5 175740715 175959543 218829 * c(CLTB, HIGD2A, RNF44, FAF2, ARL10, SIMC1, NOP16, KIAA1191) 0.461130840966748 2 0.0417193000900063 0.972774388196371 649 0.479971894547224 2 1 1 -6.90863893066741 LTS-031 chr5 175959544 175992225 32682 * c(RNF44, CDHR2) NA 0 NA 0.676 1 NA NA NA NA NA LTS-031 chr5 175992226 176334301 342076 * c(MIR4281, GPRIN1, EIF4E1B, TSPAN17, HK3, UIMC1, CDHR2, SNCB, UNC5A) 0.442996818564143 19 0.0362556710627527 0.737783882615059 678 0.3311804750336 0 0 0 -6.77319026907038 LTS-031 chr5 176334302 176335564 1263 * UIMC1 NA 0 NA 1.021 1 NA NA NA NA NA LTS-031 chr5 176335565 177099274 763710 * c(RGS14, LMAN2, B4GALT7, DBN1, LOC202181, F12, FGFR4, ZNF346, PRELID1, GRK6, PRR7-AS1, PFN3, DDX41, UIMC1, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.461351753191395 37 0.0290971501034748 1.00194591759759 1840 0.453113256229495 4 2 2 -7.09769154000093 LTS-031 chr5 177099275 177150966 51692 * c(LOC202181, FAM153A) NA 0 NA 0.333 1 NA NA NA NA NA LTS-031 chr5 177150967 177236431 85465 * FAM153A NA 0 NA 0.336463208358201 73 0.212714605574365 0 NA NA -6.21438521394138 LTS-031 chr5 177236432 177236446 15 * character(0) NA 0 NA 0.721 1 NA NA NA NA NA LTS-031 chr5 177236447 177474268 237822 * c(PROP1, FAM153C, LOC728554) 0.454431766806706 4 0.0307733651068583 0.59019767269689 138 0.271290041618701 0 0 0 -6.90227577807626 LTS-031 chr5 177474269 177482580 8312 * FAM153C NA 0 NA 2.043 1 NA NA NA NA NA LTS-031 chr5 177482581 180374817 2892237 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, ZNF354A, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.435163458940788 140 0.0661495933852656 0.905636287425069 3709 0.437435660152416 2 1 1 -6.7455047198616 LTS-031 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 0.058 1 NA NA NA NA NA LTS-031 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 0.0522066971753411 65 0.0729726470092627 0 NA NA -13.67798089322 LTS-031 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.82 1 NA NA NA NA NA LTS-031 chr5 180430826 180582986 152161 * c(BTNL3, BTNL9, OR2V1, OR2V2) 0.421261149664709 22 0.0583509311736425 0.703653901110483 213 0.349258763583849 1 1 0 -6.74008393103899 LTS-031 chr5 180582987 180620933 37947 * TRIM7 NA 0 NA 1.517 1 NA NA NA NA NA LTS-031 chr5 180620934 180671029 50096 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM41) 0.444045840689767 13 0.0375019657604429 0.990038736990668 317 0.45900810254971 4 2 2 -6.74702710402157 LTS-031 chr5 180671030 180688111 17082 * TRIM52 NA 0 NA 0.954740753612348 52 0.393158728533427 3 NA NA -5.76449078259001 LTS-031 chr6 203389 203722 334 * character(0) 0.25 1 NA 0.630056156383578 7 0.110085464634572 0 0 0 -5.76442231861212 LTS-031 chr6 203723 408761 205039 * c(IRF4, DUSP22) 0.293615640454453 4 0.113401940018679 0.736630949465292 190 0.366324702084479 3 3 0 -6.86381616168697 LTS-031 chr6 408762 4068732 3659971 * c(LOC100507194, GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, SLC22A23, BPHL, TUBB2A, RIPK1, PRPF4B, FOXQ1) 0.295859673823981 47 0.0780730522018385 1.15963853498319 1857 0.570337101703094 4 4 0 -6.75078844655137 LTS-031 chr6 4068733 10397572 6328840 * c(SCARNA27, MIR3691, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, ECI2, FARS2, RPP40, SNRNP48, DSP, PIP5K1P1, F13A1, FAM217A, LY86-AS1, CAGE1, C6orf201, SLC35B3, NRN1, LYRM4, RREB1, BLOC1S5, PPP1R3G, BMP6, SSR1, TFAP2A, HULC, TXNDC5, RIOK1, CDYL, LY86, EEF1E1) 0.307037260178074 54 0.0884986744186851 0.927018839446811 2308 0.476534943283855 3 3 0 -6.83273897462817 LTS-031 chr6 10397573 10415572 18000 * c(TFAP2A-AS1, TFAP2A) 0.260831263673533 2 0.0367695526217005 1.50655684242387 109 1.03414860632272 9 8 1 -6.73354962720063 LTS-031 chr6 10415573 10419596 4024 * c(TFAP2A-AS1, TFAP2A) NA 0 NA 0.822 1 NA NA NA NA NA LTS-031 chr6 10419597 12164073 1744477 * c(TMEM170B, ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, TMEM14B, ADTRP, GCM2) 0.326340454536825 36 0.0544937742184502 0.839381525967563 1660 0.455055803025824 3 3 0 -6.86561846706101 LTS-031 chr6 12164074 13814340 1650267 * c(LOC100130357, RANBP9, EDN1, PHACTR1, SIRT5, HIVEP1, TBC1D7, NOL7, GFOD1, MCUR1) 0.336745000295987 10 0.0550039392528693 1.00603457249254 812 0.383292559885036 3 3 0 -6.75274942429798 LTS-031 chr6 13814341 14118138 303798 * c(RNF182, MCUR1, CD83) 0.481 1 NA 0.812358070605874 85 0.308427772803317 1 1 0 -5.77252088647542 LTS-031 chr6 14118139 14136770 18632 * CD83 0.344995468333784 2 0.0332340187157677 0.907891776608727 56 0.266924693280927 8 6 2 -6.81715989525949 LTS-031 chr6 14136771 17111118 2974348 * c(MIR4639, GMPR, MYLIP, JARID2, STMND1, ATXN1, DTNBP1, CD83) 0.420768200972261 16 0.0555643770774046 1.41140419441708 678 0.566540902109883 6 4 2 -6.77821733229133 LTS-031 chr6 17111119 21231621 4120503 * c(CAP2, MBOAT1, E2F3, KDM1B, RBM24, RNF144B, ID4, NHLRC1, STMND1, FAM8A1, CDKAL1, KIF13A, MIR548A1, TPMT, DEK, NUP153) 0.391806999527306 33 0.0787221210873084 1.02987255903751 1620 0.52486475550753 4 3 1 -6.7748178714021 LTS-031 chr6 21231622 21231932 311 * CDKAL1 NA 0 NA 2.224 1 NA NA NA NA NA LTS-031 chr6 21231933 21598438 366506 * c(CDKAL1, SOX4) NA 0 NA 1.95705203642162 100 0.892594504517561 12 NA NA -5.76462364421109 LTS-031 chr6 21598439 25652601 4054163 * c(SCGN, NRSN1, HDGFL1, GPLD1, KAAG1, CASC15, GMNN, DCDC2, TDP2, CARMIL1, ACOT13, PRL, MRS2, SOX4, NBAT1, ALDH5A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.407589272484768 37 0.0934825785507251 1.0997287228181 1643 1.03553440319076 4 3 1 -6.7453417336567 LTS-031 chr6 25652602 25652614 13 * SCGN NA 0 NA 0.847 1 NA NA NA NA NA LTS-031 chr6 25652615 25921254 268640 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) 0.411043856340268 10 0.0733563600211703 0.772552723050772 354 0.327564178494038 1 1 0 -6.7380624558154 LTS-031 chr6 25921255 25921353 99 * SLC17A2 NA 0 NA 0.901 1 NA NA NA NA NA LTS-031 chr6 25921354 26600330 678977 * c(SLC17A2, BTN3A3, BTN2A2, HMGN4, TRIM38, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HCG11, BTN2A3P, BTN1A1, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, NA NA NA NA NA NA NA NA NA LTS-031 HIST1H4G, HIST1H3F) 0.445634532650431 48 0.042637990418761 1.12183754684974 1331 0.507238436710104 4 2 2 -6.7495272113123 LTS-031 NA NA NA NA LTS-031 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.341 1 NA NA NA NA NA LTS-031 chr6 26636496 26638859 2364 * ZNF322 0.44 1 NA 0.385009391297717 49 0.187383700893499 0 0 0 -5.77529723150406 LTS-031 chr6 26638860 28972087 2333228 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, NA NA NA NA NA NA NA NA NA LTS-031 HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.393178966078646 61 0.0748183592792966 1.00517976201018 2006 0.444216657788902 4 3 1 -6.79296427896148 LTS-031 NA NA NA NA LTS-031 chr6 28972088 29011943 39856 * character(0) NA 0 NA 0.378 1 NA NA NA NA NA LTS-031 chr6 29011944 29523598 511655 * character(0) 0.34720641106995 9 0.0707636912547671 0.659300127516772 452 0.306023545396283 2 2 0 -7.04147910393003 LTS-031 chr6 29523599 29523685 87 * character(0) NA 0 NA 0.892 1 NA NA NA NA NA LTS-031 chr6 29523686 30457564 933879 * character(0) 0.405679392615687 137 0.0660413065049264 1.04048437122751 1371 1.15731833199213 4 3 1 -6.75252630858607 LTS-031 chr6 30457565 30978561 520997 * character(0) 0.408340361004406 40 0.0487599496749914 1.27883901657599 1927 0.582626842017575 6 4 2 -6.73465930754234 LTS-031 chr6 30978562 30993284 14723 * character(0) NA 0 NA 0.523 1 NA NA NA NA NA LTS-031 chr6 30993285 31000036 6752 * character(0) 0.389205083277659 8 0.0576733412047047 0.476564506028682 94 0.173728562634868 4 3 1 -6.83044022482606 LTS-031 chr6 31000037 32008270 1008234 * character(0) 0.398535380723731 160 0.0697308741614556 1.20354848823994 3882 1.46902137846535 4 3 1 -6.73751842713304 LTS-031 chr6 32008271 32013859 5589 * character(0) NA 0 NA 0.760025732518794 70 0.429640342872504 1 NA NA -5.76441017468083 LTS-031 chr6 32013860 32181115 167256 * character(0) 0.403692032424583 11 0.137090016876769 1.41581732304301 960 0.587078700123786 6 4 2 -6.73516853164715 LTS-031 chr6 32181116 32181379 264 * character(0) NA 0 NA 1.137 1 NA NA NA NA NA LTS-031 chr6 32181380 32427927 246548 * character(0) 0.415979820083579 52 0.0467126739385113 1.08214744936047 486 0.44254455294042 6 4 2 -6.77726955486478 LTS-031 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 3.29 1 NA NA NA NA NA LTS-031 chr6 32485401 32546638 61238 * HLA-DRB5 0.373379599395445 5 0.0201121853611188 4.52064385368289 64 6.86435487044853 18 12 6 -6.73481976828903 LTS-031 chr6 32546639 32546707 69 * HLA-DRB5 NA 0 NA 0.885 1 NA NA NA NA NA LTS-031 chr6 32546708 32795857 249150 * c(HLA-DQA1, HLA-DRB5) 0.40345269394002 107 0.0904728472853963 1.1281368963026 470 2.73754395519228 6 4 2 -6.73605596491437 LTS-031 chr6 32795858 32795932 75 * character(0) NA 0 NA 1.696 1 NA NA NA NA NA LTS-031 chr6 32795933 32825868 29936 * character(0) NA 0 NA 1.55510401136545 242 0.642046635845129 8 NA NA -5.76441022183462 LTS-031 chr6 32825869 33163394 337526 * character(0) 0.437740158059297 61 0.0462644926340766 1.07766769663131 918 1.72062396292898 4 2 2 -6.73330194703947 LTS-031 chr6 33163395 33410260 246866 * character(0) 0.457732972695241 2 0.0431335136523794 1.38491074635585 1164 0.591922173303517 6 3 3 -6.84880781532559 LTS-031 chr6 33410261 35542279 2132019 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, FANCE, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.402614530441479 54 0.0529451445350683 1.20758747554259 2694 1.06050743297562 6 4 2 -6.75307687946508 LTS-031 chr6 35542280 38654749 3112470 * c(MIR3925, MIR4462, MIR5690, CDKN1A, STK38, BTBD9, SLC26A8, CLPS, MAPK14, CCDC167, TMEM217, FGD2, PI16, C6orf89, ARMC12, KCTD20, PXT1, LHFPL5, FKBP5, CMTR1, MTCH1, MDGA1, BRPF3, GLO1, LOC285847, PNPLA1, CLPSL1, CLPSL2, C6orf222, RAB44, ETV7, PPIL1, PIM1, TBC1D22B, MAPK13, CPNE5, ZFAND3, SRSF3, SRPK1, RNF8) 0.435949830224073 64 0.0571535109116125 1.01130781465077 3322 0.537467902662125 3 2 1 -6.7468716106515 LTS-031 chr6 38654750 39046260 391511 * c(LOC100131047, DNAH8, GLO1, GLP1R) 0.465153660818548 19 0.0314537625934728 0.747965862945637 531 0.298863620622611 0 0 0 -7.18406184115148 LTS-031 chr6 39046261 42892200 3845940 * c(TOMM6, MIR4641, FRS3, APOBEC2, FOXP4, TAF8, PTCRA, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, UBR2, DAAM2, GLTSCR1L, USP49, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, C6orf226, ATP6V0CP3, NFYA, PGC, TREM2, TREM1, MRPS10, SAYSD1, TRERF1, LRFN2, PRPH2, C6orf132, TBCC, BYSL, TDRG1, TFEB, TREML2, KCNK16, KCNK5, CCND3, KCNK17, NCR2, MED20) 0.426950935264963 96 0.0833264973073318 0.985600680454809 3682 0.485891637446953 3 2 1 -6.73329709344667 LTS-031 chr6 42892201 42892978 778 * PTCRA NA 0 NA 1.76 1 NA NA NA NA NA LTS-031 chr6 42892979 43237641 344663 * c(DNPH1, CNPY3, KLHDC3, PTCRA, CUL9, GNMT, MEA1, MRPL2, PEX6, PPP2R5D, PTK7, SRF, TTBK1, RRP36, KLC4, CUL7) 0.441640484199098 19 0.045049420555626 1.14437083589769 1407 0.51174177116434 4 2 2 -6.73675942634703 LTS-031 chr6 43237642 43299579 61938 * c(SLC22A7, ZNF318, CRIP3, TTBK1) 0.437848045547738 3 0.0409511904588865 0.736437130360304 245 0.299133459228894 0 0 0 -6.7401794123392 LTS-031 chr6 43299580 46626353 3326774 * c(LINC01512, MIR4647, MIR4642, RCAN2, CAPN11, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, ENPP4, ZNF318, YIPF3, HSP90AB1, SLC35B2, TMEM151B, NFKBIE, CYP39A1, CLIC5, POLH, GTPBP2, MRPS18A, TMEM63B, AARS2, XPO5, ENPP5, MRPL14, DLK2, MIR586, VEGFA, SUPT3H, RUNX2, ABCC10, TJAP1, SLC25A27, POLR1C, MAD2L1BP, CDC5L) 0.433700107444418 66 0.074323560251051 1.0193590525987 3106 0.514131026516829 3 2 1 -6.7431751798199 LTS-031 chr6 46626354 46626368 15 * SLC25A27 NA 0 NA 0.814 1 NA NA NA NA NA LTS-031 chr6 46626369 46989802 363434 * c(ANKRD66, ADGRF5, TDRD6, ADGRF1, MEP1A, PLA2G7, SLC25A27) 0.434414360911186 18 0.0365774315218008 0.77059646503565 688 0.317194654524966 2 1 1 -6.77582091403548 LTS-031 chr6 46989803 46991764 1962 * ADGRF1 NA 0 NA 1.475 1 NA NA NA NA NA LTS-031 chr6 46991765 47646884 655120 * c(ADGRF2, CD2AP, ADGRF1, TNFRSF21) 0.44067980516564 11 0.0337916073496472 1.08715273590735 306 0.492796135287887 4 2 2 -6.73548526116774 LTS-031 chr6 47646885 52132777 4485893 * c(CRISP3, IL17F, C6orf141, CRISP1, OPN5, ADGRF4, ADGRF2, DEFB110, DEFB112, DEFB113, DEFB114, IL17A, GLYATL3, MIR206, MCM3, PTCHD4, MIR133B, MUT, PGK2, PKHD1, CENPQ, RHAG, TFAP2B, CRISP2, TFAP2D) 0.426938526416083 56 0.0508871938065609 0.719731735833326 1669 0.56369202152071 1 1 0 -6.77983716885883 LTS-031 chr6 52132778 52133836 1059 * MCM3 NA 0 NA 1.026 1 NA NA NA NA NA LTS-031 chr6 52133837 52387758 253922 * c(EFHC1, MCM3, PAQR8, TRAM2) 0.428505980167028 9 0.0436131988176872 1.02030109754648 407 0.406265647069938 3 2 1 -6.73395292675502 LTS-031 chr6 52387759 52768666 380908 * c(EFHC1, GSTA5, TMEM14A, GSTA1, GSTA2, GSTA3, TRAM2-AS1, LOC730101, GSTA7P, TRAM2) NA 0 NA 0.604477243504012 161 0.255953840370918 0 NA NA -5.78079660624982 LTS-031 chr6 52768667 52770427 1761 * GSTA3 NA 0 NA 1.023 1 NA NA NA NA NA LTS-031 chr6 52770428 53794802 1024375 * c(MIR5685, ICK, FBXO9, GCLC, GSTA3, GSTA4, KLHL31, LRRC1, ELOVL5, RPS16P5, GCM1) 0.436107330637312 14 0.0482165445136331 0.875781956677563 814 0.368064970730396 2 1 1 -6.73471549841064 LTS-031 chr6 53794803 55378039 1583237 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, HMGCLL1, MLIP) 0.433124724052636 7 0.0597104122689949 0.656266951323231 551 0.318832975645065 0 0 0 -6.73999260916159 LTS-031 chr6 55378040 57246969 1868930 * c(BEND6, ZNF451, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.437228068191005 24 0.0991685726281338 0.91212782841633 1810 0.355305974363027 2 1 1 -6.74854718062501 LTS-031 chr6 57246970 57254927 7958 * PRIM2 0.257 1 NA 0.901220263404139 3 0.336696203324797 2 2 0 -5.76444715958547 LTS-031 chr6 57254928 57512678 257751 * PRIM2 0.303583973249122 39 0.0757804556788094 0.930368005774142 89 0.498913809464892 4 4 0 -6.76117941158918 LTS-031 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.943308196520945 19 0.424653790875889 3 NA NA -5.77123710426734 LTS-031 chr6 62390154 62407067 16914 * KHDRBS2 0.358 1 NA 0.897319477112579 23 0.441285684490182 2 2 0 -5.76444352487421 LTS-031 chr6 62407068 65149260 2742193 * c(KHDRBS2, PHF3, EYS, LGSN, PTP4A1) 0.378896493383913 8 0.153659177588398 0.859881157870839 582 0.409349445398631 2 2 0 -6.73840476345417 LTS-031 chr6 65149261 65300082 150822 * EYS NA 0 NA 0.44 1 NA NA NA NA NA LTS-031 chr6 65300083 67420492 2120410 * c(EYS, LOC441155, SLC25A51P1) 0.419839906996664 12 0.071265349223869 0.590254851062992 331 0.33129214133092 0 0 0 -6.87224805745249 LTS-031 chr6 67420493 72892443 5471951 * c(COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, LMBRD1, FAM135A, ADGRB3, SMAP1, OGFRL1, LINC00472) 0.421797849576261 22 0.0748670538860436 0.82886794818648 1346 0.484640376402192 2 1 1 -6.8038554684958 LTS-031 chr6 72892444 74213694 1321251 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, KHDC3L, RIMS1, MTO1, DPPA5, NA, OOEP, DDX43, KCNQ5, KHDC1) 0.45710519550611 7 0.0267981875719769 0.677145113759851 847 0.319592794417734 0 0 0 -7.01885990317725 LTS-031 chr6 74213695 82922524 8708830 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, EEF1A1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, MYO6, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TTK, SH3BGRL2, LINC01621, HMGN3) 0.430376252710336 47 0.1013125653248 0.967629803049468 2828 0.500116169355039 3 2 1 -6.74287554942008 LTS-031 chr6 82922525 82923959 1435 * IBTK NA 0 NA 0.734 1 NA NA NA NA NA LTS-031 chr6 82923960 88757581 5833622 * c(SYNCRIP, SLC35A1, CGA, MRAP2, RWDD2A, RIPPLY2, CFAP206, PRSS35, C6orf163, CEP162, DOPEY1, ZNF292, ORC3, IBTK, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, PGM3, AKIRIN2, RARS2, SMIM8, SNX14, LINC01590, SNORD50B, TPBG, SPACA1, UBE3D, TBX18, SNAP91) 0.398073809993161 31 0.0900238439143668 0.785805347611116 2797 0.378479519405964 1 1 0 -6.78567169075502 LTS-031 chr6 88757582 88855099 97518 * c(CNR1, SPACA1) 0.361 1 NA 0.498341206232973 164 0.155442643745333 0 0 0 -5.92584251281699 LTS-031 chr6 88855100 89319993 464894 * c(CNR1, RNGTT) NA 0 NA 0.665 1 NA NA NA NA NA LTS-031 chr6 89319994 96056827 6736834 * c(MIR4464, MIR4643, PNRC1, PM20D2, SRSF12, EPHA7, ANKRD6, MDN1, GABRR1, GABRR2, UBE2J1, LYRM2, RRAGD, BACH2, TSG1, MAP3K7, MANEA, GJA10, RNGTT, CASP8AP2) 0.403657108099251 51 0.0869675440925533 0.786295536377921 2473 0.419015595953864 1 1 0 -6.77249248423416 LTS-031 chr6 96056828 96653455 596628 * c(FUT9, MANEA) 0.469 1 NA 0.399528264461076 66 0.185906886987466 0 0 0 -7.53522136798518 LTS-031 chr6 96653456 96969653 316198 * FUT9 NA 0 NA 1.56 1 NA NA NA NA NA LTS-031 chr6 96969654 97002741 33088 * UFL1 0.215574805337513 3 0.178580514054585 1.09882555640412 117 0.634242020303214 7 7 0 -6.73812265701461 LTS-031 chr6 97002742 97587492 584751 * c(KLHL32, UFL1, NDUFAF4, GPR63, FHL5) 0.404273392703373 13 0.0825030690959822 0.59794867889957 223 0.391823174806077 0 0 0 -6.85017611025475 LTS-031 chr6 97587493 100014931 2427439 * c(TSTD3, MIR2113, KLHL32, MMS22L, PNISR, FBXL4, COQ3, POU3F2, FAXC, USP45, CCNC) 0.412761838907283 29 0.059952012829967 0.824713210552018 959 0.376402029425742 1 1 0 -6.80223950483 LTS-031 chr6 100014932 100016317 1386 * c(TSTD3, CCNC) NA 0 NA 0.608 1 NA NA NA NA NA LTS-031 chr6 100016318 105573376 5557059 * c(LIN28B-AS1, TSTD3, ASCC3, BVES, GRIK2, LIN28B, HACE1, PRDM13, SIM1, MCHR2-AS1, MCHR2, CCNC) 0.438816055232571 21 0.058758383393756 0.649654692053541 1199 0.321710593793336 0 0 0 -6.73341454319957 LTS-031 chr6 105573377 105614647 41271 * c(BVES, BVES-AS1, POPDC3) NA 0 NA 0.412893998114768 79 0.198627107127442 0 NA NA -5.88878132983286 LTS-031 chr6 105614648 105725385 110738 * c(BVES-AS1, POPDC3) NA 0 NA 1.219 1 NA NA NA NA NA LTS-031 chr6 105725386 111678258 5952873 * c(LOC100422737, LOC100996634, SEC63, GTF3C6, SLC16A10, AIM1, CCDC162P, AK9, FOXO3, CDK19, LACE1, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, LINC00222, GSTM2P1, C6orf203, CDC40, SOBP, QRSL1, PREP, PDSS2, BEND3, REV3L, PRDM1, MICAL1, SMPD2, NR2E1, METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.40732418674635 69 0.0665006425880279 0.769274660921974 4305 0.429386340332939 1 1 0 -6.74933494619758 LTS-031 chr6 111678259 117073559 5395301 * c(TRAPPC3L, TRAF3IP2, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, TSPYL4, FRK, FYN, FAM26E, LINC01268, FLJ34503, DSE, HDAC2, RSPH4A, KPNA5, LAMA4, MARCKS, FAM26F, RFPL4B, TUBE1, RWDD1, REV3L, FAM229B, TRAF3IP2-AS1, TSPYL1, TPI1P3, WISP3) 0.416512736033606 48 0.0638045414022082 0.854821521454792 2594 0.403419822618768 2 1 1 -6.81515602611992 LTS-031 chr6 117073560 117073661 102 * FAM162B NA 0 NA 0.535 1 NA NA NA NA NA LTS-031 chr6 117073662 117858369 784708 * c(FAM162B, GPRC6A, RFX6, VGLL2, DCBLD1, GOPC, ROS1) 0.37165944513931 9 0.150255153359581 0.567728321894205 558 0.284084867998337 0 0 0 -6.94918745831017 LTS-031 chr6 117858370 117859743 1374 * c(DCBLD1, GOPC) NA 0 NA 1.07 1 NA NA NA NA NA LTS-031 chr6 117859744 132859633 14999890 * c(LOC100287632, SMLR1, LINC01013, MIR5695, TRDN, SMPDL3A, TMEM200A, NUS1, CLVS2, NCOA7, HINT3, CTGF, SAMD3, RNF217, NKAIN2, EPB41L2, FABP7, TBC1D32, SLC35F1, HEY2, BRD7P3, TMEM244, MCM9, ASF1A, MOXD1, GJA1, DCBLD1, LOC285762, HSF2, C6orf58, ARG1, CENPW, SOGA3, CEP85L, THEMIS, LAMA2, MAN1A1, HDDC2, ENPP1, ENPP3, PLN, PKIB, ECHDC1, GOPC, SERINC1, PTPRK, TRMT11, LOC643623, CTAGE9, MIR548B, TPD52L1, NA NA NA NA NA NA NA NA NA LTS-031 OR2A4, RNF217-AS1, FAM184A, RNF146, STX7, L3MBTL3, RSPO3, ARHGAP18, MED23, AKAP7, KIAA0408) 0.41246183335266 126 0.0619332092878967 0.772590372922084 5853 0.433032718389272 1 1 0 -6.74771392867634 LTS-031 NA NA NA NA LTS-031 chr6 132859634 133849878 990245 * c(SLC18B1, TAAR1, EYA4, LINC00326, TAAR6, VNN3, SNORA33, RPS12, TAAR8, VNN2, VNN1, TAAR5, TAAR2, TAAR3) 0.353256506040148 11 0.0616392731949364 0.613001588626615 575 0.323713653270511 2 2 0 -7.41573562951453 LTS-031 chr6 133849879 135286072 1436194 * c(HBS1L, LINC01312, SLC2A12, LINC01010, EYA4, HMGA1P7, SGK1, ALDH8A1, TCF21, TBPL1) 0.389984442184331 12 0.0956255322821391 0.962644719636009 642 0.419375361046161 2 2 0 -6.80593865652509 LTS-031 chr6 135286073 135787438 501366 * c(MIR3662, HBS1L, MYB, AHI1) 0.431444949056315 12 0.0567868822880778 0.646807265692166 453 0.584698227072631 0 0 0 -6.74282980987139 LTS-031 chr6 135787439 135787444 6 * AHI1 NA 0 NA 0.934 1 NA NA NA NA NA LTS-031 chr6 135787445 137026411 1238967 * c(LINC00271, MTFR2, PDE7B, MAP3K5, AHI1, MAP7, BCLAF1) 0.337187744922848 12 0.0814463943432437 0.961267711904786 761 0.625002961420469 3 3 0 -6.74337120132093 LTS-031 chr6 137026412 137041575 15164 * MAP3K5 NA 0 NA 0.598 1 NA NA NA NA NA LTS-031 chr6 137041576 151162228 14120653 * c(UST-AS1, LOC100130476, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, RAB32, KATNA1, GINM1, IL22RA2, ADAT2, STXBP5, RAET1E, LOC153910, ZC2HC1B, RAET1L, OLIG3, TXLNB, TAB2, SASH1, HEBP2, FUCA2, SHPRH, CCDC28A, PHACTR2-AS1, GRM1, HIVEP2, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, RAET1G, SUMO4, SAMD5, IYD, MAP3K5, FLJ46906, NMBR, PCMT1, AIG1, VTA1, NA NA NA NA NA NA NA NA NA LTS-031 HECA, PEX7, PLAGL1, IL20RA, HYMAI, ADGRG6, ARFGEF3, NHSL1, PLEKHG1, ABRACL, PBOV1, PERP, LINC01625, RPS18P9, RAET1K, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, EPM2A, ADGB, ULBP2, ULBP1, PPP1R14C, SF3B5, FBXO30, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, PHACTR2) 0.410804861465796 126 0.0809414669953855 0.784936630820628 6654 0.406357400286142 1 1 0 -6.78535809204533 LTS-031 NA NA NA NA LTS-031 chr6 151162229 151162312 84 * PLEKHG1 NA 0 NA 0.907 1 NA NA NA NA NA LTS-031 chr6 151162313 152646486 1484174 * c(ESR1, SYNE1, MTHFD1L, RMND1, PLEKHG1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.413385551932703 27 0.0563405396695524 1.00899027492232 1333 0.538390068052319 3 2 1 -6.77648533364038 LTS-031 chr6 152646487 153044216 397730 * c(SYNE1, MYCT1) 0.394086232429314 9 0.0654331720154235 0.809154733260039 613 0.425150195090666 1 1 0 -6.81407293258358 LTS-031 chr6 153044217 154440185 1395969 * c(FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.414297423244776 8 0.0714931315382314 0.615456275221433 377 0.457043025057562 0 0 0 -6.8124366424378 LTS-031 chr6 154440186 154440190 5 * OPRM1 NA 0 NA 0.896 1 NA NA NA NA NA LTS-031 chr6 154440191 160868943 6428753 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.416445673080908 99 0.0741075299456154 0.87177095328084 4026 1.31758789527597 1 1 0 -6.77379254403243 LTS-031 chr6 160868944 160871976 3033 * SLC22A3 NA 0 NA 0.495 1 NA NA NA NA NA LTS-031 chr6 160871977 161174382 302406 * c(LPA, PLG, SLC22A3, LPAL2) 0.401578702610277 4 0.0608844534069795 0.594661748642049 263 0.273152093063389 1 1 0 -6.91861458880406 LTS-031 chr6 161174383 161412766 238384 * PLG NA 0 NA 0.722 1 NA NA NA NA NA LTS-031 chr6 161412767 167585786 6173020 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, MAP3K4, LINC00602, PARK2, MPC1, AGPAT4, RPS6KA2, T, AGPAT4-IT1, RNASET2, LINC00473, QKI) 0.405013320099836 57 0.0762655177520941 0.78371751789173 2149 0.377865747749243 1 1 0 -6.77122625419355 LTS-031 chr6 167585787 167587258 1472 * TCP10L2 NA 0 NA 0.313 1 NA NA NA NA NA LTS-031 chr6 167587259 167622096 34838 * TCP10L2 0.370774671932668 10 0.102714545113035 0.423786247232081 165 0.421735827858661 2 2 0 -6.79431083201902 LTS-031 chr6 167622097 167622109 13 * character(0) NA 0 NA 0.53 1 NA NA NA NA NA LTS-031 chr6 167622110 167785909 163800 * c(UNC93A, TCP10, TTLL2) 0.338740939370179 5 0.0902313692681209 0.657229959195783 151 0.337852075863924 2 2 0 -6.8698533862796 LTS-031 chr6 167785910 167791618 5709 * TCP10 0.346456097250619 6 0.0512093741418502 0.378565935735427 111 0.354408851337878 8 6 2 -6.79832653767436 LTS-031 chr6 167791619 167794423 2805 * TCP10 NA 0 NA 0.549 1 NA NA NA NA NA LTS-031 chr6 167794424 170891863 3097440 * c(HGC6.3, MIR4644, LOC154449, DACT2, WDR27, LINC01558, DLL1, KIF25, C6orf120, LINC00242, AFDN, PDCD2, PHF10, ERMARD, PSMB1, SMOC2, AFDN-AS1, TBP, TCP10, TCTE3, THBS2, FRMD1, LINC00574, FAM120B) 0.409716869477583 53 0.0563707597467579 0.91827950304696 1835 0.426931861749871 3 2 1 -6.85310753390123 LTS-031 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 0.998763690086128 21 0.427204300406391 3 NA NA -5.76441072829073 LTS-031 chr7 193047 299652 106606 * FAM20C 0.5 1 NA 0.961382384270447 97 0.411589748577416 3 3 0 -5.76470495991013 LTS-031 chr7 299653 1732523 1432871 * c(WI2-2373I1.2, ADAP1, PSMG3-AS1, GPR146, TMEM184A, SUN1, TFAMP1, INTS1, GPER1, UNCX, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, MAFK, MICALL2, PSMG3, C7orf50, ZFAND2A, COX19) 0.398991928705461 73 0.0555873611391749 0.965443570584412 1737 0.437841067772582 4 3 1 -6.81536126222414 LTS-031 chr7 1732524 1889195 156672 * c(MIR4655, ELFN1, MAD1L1) 0.433706650250326 11 0.0590983771504614 0.564753885380229 173 0.235195593638796 0 0 0 -6.7688682512801 LTS-031 chr7 1889196 4874420 2985225 * c(MIR4648, MIR4656, AMZ1, BRAT1, SDK1, FOXK1, IQCE, GNA12, SNX8, MRM2, LFNG, NUDT1, CHST12, RADIL, TTYH3, MAD1L1, CARD11, EIF3B, AP5Z1) 0.421704738994825 93 0.061140712864003 0.936156960642602 2327 0.406911397497008 3 2 1 -6.77216398855091 LTS-031 chr7 4874421 4874424 4 * RADIL NA 0 NA 0.688 1 NA NA NA NA NA LTS-031 chr7 4874425 5016142 141718 * c(MMD2, RNF216P1, RADIL, PAPOLB) 0.359172636895338 5 0.0631228960045402 0.588662498003269 196 0.225627189286363 2 2 0 -6.99926012596036 LTS-031 chr7 5016143 5021624 5482 * RNF216P1 NA 0 NA 0.979 1 NA NA NA NA NA LTS-031 chr7 5021625 5767571 745947 * c(RBAK-RBAKDN, RNF216-IT1, SLC29A4, WIPI2, RBAKDN, RNF216P1, RNF216, RBAK, ACTB, ZNF890P, FSCN1, MIR589, FBXL18, TNRC18) 0.399036795822079 29 0.0597016803816617 0.982917428524151 996 0.480251627035166 4 3 1 -6.76239470556513 LTS-031 chr7 5767572 5768998 1427 * RNF216 NA 0 NA 0.818 1 NA NA NA NA NA LTS-031 chr7 5768999 5944778 175780 * c(ZNF815P, CCZ1, RNF216, OCM) 0.323755027942148 3 0.0820182906430023 0.644057043909684 125 0.342167387446931 3 3 0 -6.8951711595298 LTS-031 chr7 5944779 6017391 72613 * c(RSPH10B, CCZ1, PMS2) 0.309473825618814 2 0.149199530830361 0.361449330236042 109 0.299080783659874 2 2 0 -7.18568814956688 LTS-031 chr7 6017392 6018170 779 * PMS2 NA 0 NA 1.071 1 NA NA NA NA NA LTS-031 chr7 6018171 6786822 768652 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.409619809441138 23 0.0494854552033205 0.796556683205142 1295 0.391338913732976 1 1 0 -6.7545757470841 LTS-031 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.013 1 NA NA NA NA NA LTS-031 chr7 6790904 6859618 68715 * c(CCZ1B, PMS2CL, RSPH10B2) 0.458277219645897 2 0.0367695526217005 0.336500276380942 103 0.217405771681092 0 0 0 -7.25038763409306 LTS-031 chr7 6859619 6861898 2280 * CCZ1B NA 0 NA 0.622 1 NA NA NA NA NA LTS-031 chr7 6861899 16502561 9640663 * c(LOC100131257, ISPD-AS1, ARL4A, GLCCI1, DGKB, PER4, ETV1, VWDE, CCZ1B, THSD7A, SOSTDC1, NXPH1, ICA1, COL28A1, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, RPA3, UMAD1, ISPD, SCIN, PHF14) 0.387410574835732 58 0.0780044440076107 0.690690784254256 2363 0.343912224981649 0 0 0 -7.17992958004496 LTS-031 chr7 16502562 26724509 10221948 * c(MIR3146, LRRC72, LOC100506178, KLHL7-AS1, RNU6-16P, MACC1-AS1, GPNMB, AGR2, IGF2BP3, NUPL2, CBX3, MALSU1, CLK2P1, C7orf31, AGR3, DFNA5, AHR, PRPS1L1, TWISTNB, SP8, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, HNRNPA2B1, ABCB5, FAM221A, MACC1, IL6, ITGB8, MIR148A, LOC441204, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, ANKMY2, NPVF, SP4, NA NA NA NA NA NA NA NA NA LTS-031 SNORD93, TWIST1, FAM126A, DNAH11, SKAP2, CCDC126, NFE2L3, HDAC9, RAPGEF5, KIAA0087) 0.435753558440845 110 0.067394849987498 0.857045248201043 4841 0.461439474787022 2 1 1 -6.74635348601331 LTS-031 NA NA NA NA LTS-031 chr7 26724510 26729854 5345 * SKAP2 NA 0 NA 1.041 1 NA NA NA NA NA LTS-031 chr7 26729855 30915263 4185409 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, AQP1, LOC401320, DPY19L2P3, MIR196B, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, NA NA NA NA NA NA NA NA NA LTS-031 CREB5, SCRN1, TRIL) 0.442380962182721 91 0.0502251487580233 1.06531150967019 3016 0.528021080603583 4 2 2 -6.74683066905708 LTS-031 NA NA NA NA LTS-031 chr7 30915264 30921760 6497 * c(INMT-FAM188B, AQP1, FAM188B) NA 0 NA 0.932 1 NA NA NA NA NA LTS-031 chr7 30921761 39874090 8952330 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, INMT-FAM188B, POU6F2-AS1, AOAH-IT1, PPP1R17, POU6F2, FKBP9, ADCYAP1R1, BMPER, CCDC129, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, GHRHR, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, AQP1, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, NEUROD6, HERPUD2, SFRP4, NA NA NA NA NA NA NA NA NA LTS-031 LOC646999, MIR550A2, EEPD1, STARD3NL, FAM188B, ELMO1, SEPT7) 0.442277190821133 97 0.0493718163095553 0.892268298674374 4274 0.455071760589989 2 1 1 -6.74626543185405 LTS-031 NA NA NA NA LTS-031 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.421 1 NA NA NA NA NA LTS-031 chr7 39892331 39990122 97792 * CDK13 NA 0 NA 0.486166133645385 40 0.284982202548213 0 NA NA -5.82310992245729 LTS-031 chr7 39990123 43832482 3842360 * c(MIR3943, LOC100506895, MPLKIP, HECW1, GLI3, INHBA-AS1, INHBA, COA1, PSMA2, BLVRA, MRPL32, C7orf25, SUGCT, CDK13, STK17A) 0.443235828630409 14 0.0565299201143241 1.08318195853726 1171 1.03558372929022 4 2 2 -6.73762085504572 LTS-031 chr7 43832483 43839955 7473 * BLVRA NA 0 NA 0.634 1 NA NA NA NA NA LTS-031 chr7 43839956 48266949 4426994 * c(URGCP-MRPS24, MIR4649, RAMP3, YKT6, ADCY1, C7orf57, ABCA13, AEBP1, PKD1L1, TMED4, NACAD, NUDCD3, LINC00957, SUN3, GCK, POLM, SPDYE1, SNHG15, DBNL, NPC1L1, HUS1, IGFBP1, IGFBP3, RASA4CP, C7orf65, OGDH, UBE2D4, PGAM2, POLD2, DDX56, PPIA, URGCP, PURB, MYL7, MYO1G, SEPT7P2, BLVRA, TNS3, MRPS24, SNORA5B, SNORA5C, SNORA9, UPP1, C7orf69, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, TBRG4, H2AFV) 0.413978305185296 63 0.0944220840371417 0.900808921899184 4139 0.418943242565459 2 1 1 -6.78661993469672 LTS-031 chr7 48266950 50515038 2248089 * c(C7orf72, IKZF1, ZPBP, ABCA13, CDC14C, VWC2, FIGNL1) 0.437607457862861 17 0.0417372735094184 0.634717089132868 940 0.275209419448273 0 0 0 -6.74043079918587 LTS-031 chr7 50515039 50530852 15814 * c(DDC, FIGNL1) NA 0 NA 2.594 1 NA NA NA NA NA LTS-031 chr7 50530853 53930236 3399384 * c(DDC-AS1, DDC, COBL, POM121L12, GRB10, LINC01446) 0.397438086397608 20 0.138229443127607 0.895095398197647 524 0.408282741096502 2 2 0 -6.76450687588042 LTS-031 chr7 53930237 53934389 4153 * character(0) 0.388 1 NA 0.435556441242493 74 0.225005198837466 0 0 0 -5.77213097873572 LTS-031 chr7 53934390 53934397 8 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-031 chr7 53934398 55538475 1604078 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, HPVC1, LANCL2, VOPP1) 0.427988905027125 16 0.0466376100016571 0.888422015683946 620 0.35689144710387 2 1 1 -6.76605720859273 LTS-031 chr7 55538476 55539987 1512 * VOPP1 0.359558390016315 2 0.0487903679018718 0.348997195129709 44 0.225607945409093 5 4 1 -6.76070604738911 LTS-031 chr7 55539988 57532512 1992525 * c(LOC100130849, MIR3147, DKFZp434L192, SUMF2, GBAS, SEPT14, ZNF713, FKBP9P1, NUPR2, ZNF716, CHCHD2, MRPS17, PHKG1, PSPH, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.406070981995968 26 0.106977215403022 0.847345463417378 819 0.555064084195823 1 1 0 -6.78424030026589 LTS-031 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.28434926726529 15 1.17118666724131 6 NA NA -5.76441051556856 LTS-031 chr7 62758725 63023528 264804 * ZNF733P 0.443 1 NA 0.994862295887469 7 0.645919720796854 3 3 0 -5.7644251908054 LTS-031 chr7 63023529 66774604 3751076 * c(LOC100128885, LINC01005, MIR4650-2, ZNF273, VKORC1L1, KCTD7, ZNF92, ZNF679, ERV3-1, CRCP, RABGEF1, LINC00174, GUSB, ZNF680, ASL, LOC441242, ZNF727, GS1-124K5.11, SBDS, ZNF117, ZNF107, PMS2P4, TMEM248, TYW1, LOC641746, CCT6P3, CCT6P1, INTS4P2, YWHAEP1, STAG3L4, SNORA22, ZNF736, GTF2IRD1P1, ZNF735, ZNF138, TPST1) 0.442486468653226 19 0.0648767161938208 0.854566192910471 1599 0.431666420253389 2 1 1 -6.74178205705072 LTS-031 chr7 66774605 66774657 53 * STAG3L4 NA 0 NA 1.281 1 NA NA NA NA NA LTS-031 chr7 66774658 66786524 11867 * STAG3L4 0.484829874627251 3 0.0159478316185409 0.412294992691513 38 0.134374736097528 0 0 0 -9.76162205407176 LTS-031 chr7 69063868 70885883 1822016 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17) 0.422901084874263 5 0.0805791536316931 1.20914292776144 266 0.700910736130285 5 3 2 -6.74311120536192 LTS-031 chr7 70885884 70885885 2 * WBSCR17 NA 0 NA 0.701 1 NA NA NA NA NA LTS-031 chr7 70885886 72417165 1531280 * c(MIR4650-1, SBDSP1, TYW1B, SPDYE7P, WBSCR17, CALN1, POM121) 0.434181855584325 7 0.0751417707688987 0.726056830938104 426 0.351703994074088 1 1 0 -6.77882625931295 LTS-031 chr7 72417166 72417269 104 * POM121 NA 0 NA 0.258 1 NA NA NA NA NA LTS-031 chr7 72417270 72717578 300309 * c(NSUN5P2, GTF2IRD2P1, STAG3L3, LOC541473, NSUN5, NCF1B, FKBP6, POM121) 0.429 1 NA 0.512338186543918 197 0.757997438485955 0 0 0 -5.78153421500973 LTS-031 chr7 72717579 72850437 132859 * c(TRIM50, NSUN5, FZD9, FKBP6) 0.492 1 NA 0.689896505888027 174 0.314337208539461 0 0 0 -5.76766634621258 LTS-031 chr7 72850438 72855930 5493 * c(FZD9, BAZ1B) NA 0 NA 1.371 1 NA NA NA NA NA LTS-031 chr7 72855931 74210670 1354740 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, ABHD11, GTF2IRD2, DNAJC30, BAZ1B, BCL7B, GTF2IRD1) 0.431320882826262 23 0.0443533690250641 0.949942560808551 1715 0.480577434112717 3 2 1 -6.74127528592599 LTS-031 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.617 1 NA NA NA NA NA LTS-031 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.308 1 NA 0.696889930483663 224 0.562017299597837 0 0 0 -5.77302009978879 LTS-031 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.626 1 NA NA NA NA NA LTS-031 chr7 75048588 76029882 981295 * c(POM121C, MIR4651, CCL26, SSC4D, SRRM3, HIP1, HSPB1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A, YWHAG, ZP3, TMEM120A) 0.446276887161902 25 0.0665628024249781 1.01652173553029 1006 0.516516181760834 4 2 2 -6.75534550612009 LTS-031 chr7 76029883 76030267 385 * c(SSC4D, ZP3) NA 0 NA 0.367 1 NA NA NA NA NA LTS-031 chr7 76030268 89859386 13829119 * c(PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, FGL2, DBF4, TP53TG1, DTX2, SSC4D, RUNDC3B, C7orf62, ZNF804B, RSBN1L, KIAA1324L, SEMA3D, POMZP3, STEAP2, STEAP1, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, DPY19L2P4, ABCB1, ABCB4, ADAM22, GSAP, CROT, SLC25A40, PHTF2, CCDC146, PTPN12, FDPSP2, SRI, ZP3, CACNA2D1, TMEM243, STEAP4, UPK3B, TMEM60, CD36, NA NA NA NA NA NA NA NA NA LTS-031 SEMA3E, MAGI2, DMTF1) 0.417323960396243 118 0.0799040221745421 0.812835563297537 5184 0.425565756405917 1 1 0 -6.92450574916713 LTS-031 NA NA NA NA LTS-031 chr7 89859387 89861635 2249 * STEAP2 NA 0 NA 0.99 1 NA NA NA NA NA LTS-031 chr7 89861636 91732004 1870369 * c(LOC101409256, AKAP9, STEAP2, CDK14, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.420309145428748 28 0.0984387315157701 1.02720382774859 1132 0.875948869216231 3 2 1 -6.73919885756982 LTS-031 chr7 91732005 93539172 1807168 * c(MIR4652, AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, TFPI2, CALCR, RBM48, NA, KRIT1) 0.43441303474401 31 0.0913637418965168 0.808466449160569 1825 0.37077149219893 1 1 0 -6.78197092006865 LTS-031 chr7 93539173 96746712 3207540 * c(LOC100506136, SLC25A13, BET1, COL1A2, DLX5, DLX6, DYNC1I1, PEG10, GNG11, GNGT1, DLX6-AS1, C7orf76, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, SDHAF3, CASD1, MIR591, SHFM1, SGCE) 0.428375031964612 36 0.0403740742682216 1.01297385208746 1850 0.458707170746536 3 2 1 -6.7384386990353 LTS-031 chr7 96746713 98488047 1741335 * c(MIR3609, BHLHA15, TMEM130, LMTK2, BRI3, TECPR1, MGC72080, ASNS, NPTX2, OCM2, BAIAP2L1, SDHAF3, TAC1, TRRAP) 0.429104607781147 30 0.0557243214404626 0.805188247438519 902 0.403858699144262 1 1 0 -6.77895569188275 LTS-031 chr7 98488048 98488123 76 * TRRAP NA 0 NA 0.915 1 NA NA NA NA NA LTS-031 chr7 98488124 99055790 567667 * c(ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, PTCD1, KPNA7, SMURF1, TRRAP, MYH16, BUD31, ATP5J2) 0.407 1 NA 1.02984654766397 1092 0.44588384365563 3 3 0 -5.76726737872931 LTS-031 chr7 99055791 99566058 510268 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, CYP3A43, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.416 1 NA 0.751631721190075 1073 0.349816517231899 1 1 0 -5.7648067005607 LTS-031 chr7 99566059 99567795 1737 * AZGP1 NA 0 NA 1.352 1 NA NA NA NA NA LTS-031 chr7 99567796 100320992 753197 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, GIGYF1, AZGP1P1, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.431516350667201 75 0.0532991455740045 1.00871080406986 2577 0.422943162867478 3 2 1 -6.73613332157722 LTS-031 chr7 100320993 100344353 23361 * c(EPO, ZAN) NA 0 NA 0.275221582142272 40 0.356163811886379 0 NA NA -5.84418996099628 LTS-031 chr7 100344354 100392927 48574 * ZAN 0.486 1 NA 0.818256484378666 218 3.89692902891804 2 2 0 -5.76441872977442 LTS-031 chr7 100392928 100392930 3 * ZAN NA 0 NA 1.273 1 NA NA NA NA NA LTS-031 chr7 100392931 100485916 92986 * c(EPHB4, SRRT, SLC12A9, TRIP6, ZAN) NA 0 NA 1.27845581944238 380 0.852884305371391 6 NA NA -5.76452920115004 LTS-031 chr7 100485917 100674525 188609 * c(MUC12, MUC17, UFSP1, ACHE, SRRT) 0.375522474686516 145 0.0788537414958398 0.902221441380429 544 0.352270130151579 2 2 0 -6.73786612657256 LTS-031 chr7 100674526 100687115 12590 * MUC17 0.468 2 0.00707106781186544 0.366363395503773 181 0.106509666916744 0 0 0 -11.4080629714704 LTS-031 chr7 100687116 100691170 4055 * MUC17 NA 0 NA 0.988 1 NA NA NA NA NA LTS-031 chr7 100691171 103008306 2317136 * c(RPL19P12, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, FBXL13, NAPEPLD, CLDN15, POLR2J2, DNAJC2, MOGAT3, DPY19L2P2, NAT16, SLC26A5, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, PSMC2, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.408773826478438 38 0.0920478453422346 0.9460685665502 2541 0.488103095868474 3 2 1 -6.77139498523606 LTS-031 chr7 103008307 104704029 1695723 * c(KMT2E-AS1, LINC01004, SLC26A5, LHFPL3, ORC5, KMT2E, RELN, PSMC2, LHFPL3-AS1, LHFPL3-AS2) 0.42126280023216 8 0.0520960651105244 0.652766611999578 713 0.338627089184738 0 0 0 -6.80016851374763 LTS-031 chr7 104704030 104704396 367 * KMT2E NA 0 NA 1.084 1 NA NA NA NA NA LTS-031 chr7 104704397 108154789 3450393 * c(EFCAB10, NAMPT, COG5, DUS4L, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LAMB1, NRCAM, PNPLA8, SLC26A4, PIK3CG, PUS7, PRKAR2B, KMT2E, BCAP29, RINT1, SRPK2, SYPL1, CBLL1) 0.422865160262789 31 0.0905842090252555 0.874579275243338 3058 0.44075595544473 2 1 1 -6.75121773978833 LTS-031 chr7 108154790 108154794 5 * PNPLA8 NA 0 NA 0.645 1 NA NA NA NA NA LTS-031 chr7 108154795 111368279 3213485 * c(C7orf66, THAP5, DNAJB9, EIF3IP1, PNPLA8, LRRN3, IMMP2L, DOCK4) 0.38188059990491 3 0.0614898365585728 0.680562015702285 343 0.312710219528194 1 1 0 -7.16564338578174 LTS-031 chr7 111368280 112099042 730763 * c(ZNF277, IFRD1, DOCK4) 0.426572902478636 5 0.053626485993397 0.978685989247139 456 0.360609879982198 3 2 1 -6.73405243485631 LTS-031 chr7 112099043 112101925 2883 * IFRD1 NA 0 NA 0.673 1 NA NA NA NA NA LTS-031 chr7 112101926 117308215 5206290 * c(MIR3666, CFTR, ASZ1, BMT2, TFEC, TES, LSMEM1, MDFIC, ST7-OT4, IFRD1, LINC00998, MET, GPR85, PPP1R3A, TMEM168, WNT2, ST7, CAPZA2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, FOXP2) 0.422515866824565 39 0.0706223730000001 0.750499358427829 2132 0.413315406540783 1 1 0 -6.73963959704334 LTS-031 chr7 117308216 120988929 3680714 * c(FAM3C, CFTR, TSPAN12, KCND2, WNT16, LSM8, ING3, ANKRD7, CPED1, CTTNBP2) 0.452512147177512 13 0.0284000722281494 0.915527751686716 967 0.446972222224889 2 1 1 -6.89518046155364 LTS-031 chr7 120988930 120990550 1621 * FAM3C NA 0 NA 0.320745351340442 39 0.138627283089348 0 NA NA -5.78925700594742 LTS-031 chr7 120990551 120990581 31 * FAM3C NA 0 NA 0.708 1 NA NA NA NA NA LTS-031 chr7 120990582 123152450 2161869 * c(AASS, FAM3C, FEZF1-AS1, IQUB, RNF133, RNF148, FEZF1, TAS2R16, PTPRZ1, SLC13A1, CADPS2) 0.436735539882977 9 0.0636945837571767 0.817876355906229 990 0.432520532916093 2 1 1 -6.76490004382305 LTS-031 chr7 123152451 123177030 24580 * IQUB NA 0 NA 1.31 1 NA NA NA NA NA LTS-031 chr7 123177031 123389086 212056 * c(ASB15, LMOD2, NDUFA5, WASL) 0.474025326480307 9 0.0426731765867037 1.09657057975631 409 0.675613805452942 4 2 2 -7.11918187043863 LTS-031 chr7 123389087 123389093 7 * WASL 0.404 1 NA 0.769 1 NA NA NA NA NA LTS-031 chr7 123389094 127017280 3628187 * c(C7orf77, ZNF800, HYAL4, POT1, HYALP1, GPR37, GRM8, SPAM1, MIR592, TMEM229A, WASL) 0.440564664034167 11 0.0440619398739382 0.749795731846968 523 0.344030197367729 1 1 0 -6.89671114906692 LTS-031 chr7 127017281 128118104 1100824 * c(MGC27345, ZNF800, SND1, SND1-IT1, HILPDA, FSCN3, IMPDH1, ARF5, LEP, PRRT4, MIR129-1, PAX4, RBM28, METTL2B, LRRC4, MIR593, GCC1) 0.439524778784095 21 0.0455845107360781 1.02344798490267 918 0.452310713148002 4 2 2 -6.75100516873216 LTS-031 chr7 128118105 128119239 1135 * METTL2B NA 0 NA 0.442 1 NA NA NA NA NA LTS-031 chr7 128119240 128142659 23420 * METTL2B 0.255 1 NA 0.486275167784918 60 0.207025325970569 0 0 0 -5.79114839803771 LTS-031 chr7 128142660 128142935 276 * METTL2B NA 0 NA 1.013 1 NA NA NA NA NA LTS-031 chr7 128142936 129351464 1208529 * c(LOC100130705, SMKR1, FLNC, AHCYL2, TNPO3, TPI1P2, TSPAN33, FAM71F2, IRF5, KCP, LINC01000, LOC407835, NRF1, METTL2B, STRIP2, OPN1SW, CCDC136, SMO, CALU, FAM71F1, ATP6V1F) 0.448184507182198 48 0.0334918151851637 0.926211559218902 1825 0.403904645144894 2 1 1 -6.79557527487566 LTS-031 chr7 129351465 129356997 5533 * NRF1 NA 0 NA 1.99 1 NA NA NA NA NA LTS-031 chr7 129356998 131808539 2451542 * c(RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, KLHDC10, COPG2, MESTIT1, LINC-PINT, MIR182, MIR183, MIR29A, MIR29B1, MIR96, MEST, MKLN1, MIR335, NRF1, CPA4, ZC3HC1, PODXL, NA, UBE2H, TMEM209, PLXNA4, CPA5, CEP41) 0.424215801730052 53 0.0842118587569324 1.09163687489389 1689 0.556418243068824 4 2 2 -6.75108373146515 LTS-031 chr7 131808540 134552646 2744107 * c(LRGUK, AKR1B1, FLJ40288, AKR1B15, CHCHD3, AKR1B10, EXOC4, BPGM, CALD1, SLC35B4, PLXNA4) 0.45342265649522 12 0.0470057217664816 0.857868337618635 1143 0.398974915904629 2 1 1 -6.79562546557673 LTS-031 chr7 134552647 134576319 23673 * CALD1 NA 0 NA 2.815 1 NA NA NA NA NA LTS-031 chr7 134576320 134635274 58955 * CALD1 NA 0 NA 1.7973026030876 63 1.35149622912817 10 NA NA -5.76441108183011 LTS-031 chr7 134635275 134642871 7597 * CALD1 NA 0 NA 1.076 1 NA NA NA NA NA LTS-031 chr7 134642872 141445499 6802628 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, CLEC2L, FMC1, TMEM213, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, NDUFB2, CNOT4, WEE2, ATP6V0A4, LUC7L2, MRPS33, TMEM140, AGK, ZC3HAV1, KIAA1147, MIR490, PTN, KIAA1549, C7orf73, PARP12, CREB3L2, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, NA NA NA NA NA NA NA NA NA LTS-031 TTC26, CALD1, KDM7A, SLC37A3, TRIM24, ADCK2, DGKI, ZC3HAV1L) 0.432705638142661 86 0.0645210238379698 0.951752348975197 5381 0.486143175199225 3 2 1 -6.76058043589504 LTS-031 NA NA NA NA LTS-031 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.501 1 NA NA NA NA NA LTS-031 chr7 141450032 141908304 458273 * c(OR9A4, PRSS37, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, MGAM, MGAM2) 0.430505415551357 23 0.0453360748609148 0.692156524643273 873 0.27586939750554 0 0 0 -6.76869489577025 LTS-031 chr7 141908305 142008477 100173 * c(MOXD2P, PRSS58, NA) 0.337 1 NA 0.573110536456277 83 0.264566904725647 0 0 0 -5.77714575419089 LTS-031 chr7 142008478 142499854 491377 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.346100304271012 106 0.0844259134433069 0.868040329073897 551 0.668672169767824 3 3 0 -6.77379532918099 LTS-031 chr7 142499855 142655008 155154 * c(C7orf34, EPHB6, KEL, TRPV6, TRPV5) 0.488 1 NA 0.804562791077983 437 0.291260983934506 1 1 0 -5.76778375774585 LTS-031 chr7 142655009 142920258 265250 * c(OR9A2, TAS2R39, TAS2R40, OR6V1, KEL, PIP, OR6W1P) 0.466672890717987 2 0.0410121933088197 0.629708350880032 179 0.190090391100263 0 0 0 -7.00316224534849 LTS-031 chr7 142920259 142960202 39944 * character(0) NA 0 NA 1.27 1 NA NA NA NA NA LTS-031 chr7 142960203 143295560 335358 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, CTAGE15, ZYX, CASP2, FAM131B) 0.469205393692963 7 0.0289868607344448 0.982998584874345 723 0.456638937628824 4 2 2 -7.34735607569257 LTS-031 chr7 143295561 143321183 25623 * TCAF2 NA 0 NA 0.149058378764449 63 0.128395917071912 0 NA NA -7.30372874392887 LTS-031 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.01 1 NA NA NA NA NA LTS-031 chr7 143400289 143883454 483166 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.450943622172119 15 0.0415872004118483 0.642785437922307 308 0.491103779981855 0 0 0 -6.78458434501676 LTS-031 chr7 143883455 143883961 507 * ARHGEF35 NA 0 NA 0.21 1 NA NA NA NA NA LTS-031 chr7 143883962 144016241 132280 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.329 1 NA 0.221827632707143 108 0.184265984177459 0 0 0 -7.68031201501833 LTS-031 chr7 144016242 144061044 44803 * ARHGEF5 NA 0 NA 0.589 1 NA NA NA NA NA LTS-031 chr7 144061045 144074298 13254 * ARHGEF5 NA 0 NA 0.36227209170445 48 0.250793781488564 0 NA NA -5.80672731540891 LTS-031 chr7 144074299 149941129 5866831 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, CNTNAP2, TPK1, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.43929828815849 41 0.0797805679623193 0.84508088870389 2784 0.394339552294453 2 1 1 -6.76014969182577 LTS-031 chr7 149941130 149945308 4179 * ACTR3C NA 0 NA 0.356087366317994 90 0.21825436402448 0 NA NA -5.78315893769398 LTS-031 chr7 149945309 150558443 613135 * c(GIMAP1-GIMAP5, RNU6-34P, ZBED6CL, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, REPIN1, GIMAP6, GIMAP4, GIMAP5, TMEM176A, RARRES2, ACTR3C, LRRC61, LOC728743) 0.437683340414637 33 0.043889021544359 0.793685909964474 936 0.37251178828797 2 1 1 -6.758377972876 LTS-031 chr7 150558444 150558524 81 * character(0) NA 0 NA 1.007 1 NA NA NA NA NA LTS-031 chr7 150558525 151845208 1286684 * c(WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.452590940105718 35 0.0403985813878564 1.03741216956147 2181 0.432628842065358 4 2 2 -6.81871540229243 LTS-031 chr7 151845209 153418413 1573205 * c(LINC01003, FABP5P3, ACTR3B, KMT2C, XRCC2) 0.387602162137707 6 0.0792304655209514 0.83752658534005 558 0.415481040710555 2 2 0 -6.77595958331414 LTS-031 chr7 153418414 153418418 5 * character(0) NA 0 NA 0.457 1 NA NA NA NA NA LTS-031 chr7 153418419 153584403 165985 * character(0) NA 0 NA 0.404434297521136 80 0.163034002821342 0 NA NA -6.49673453069119 LTS-031 chr7 153584404 158930751 5346348 * c(HTR5A-AS1, PAXIP1-AS2, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.43369246311679 85 0.053354364725804 0.890215078558489 3145 0.430570244123554 2 1 1 -6.74343862969637 LTS-031 chr7 158930752 159025951 95200 * VIPR2 NA 0 NA 0.950019815082535 21 0.342621997737059 3 NA NA -5.76518210075658 LTS-031 chr8 182757 182934 178 * ZNF596 0.372 1 NA 1.17369466125291 3 0.266477641338506 5 5 0 -5.76441201844543 LTS-031 chr8 182935 7214028 7031094 * c(FAM66B, LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.397114573850823 99 0.0635271713902355 0.747576593242283 2377 0.341063181108203 1 1 0 -6.80614776677163 LTS-031 chr8 7214029 7272382 58354 * ZNF705G NA 0 NA 0.226 1 NA NA NA NA NA LTS-031 chr8 7272383 7686600 414218 * c(DEFB4B, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B) NA 0 NA 0.102744322025798 77 0.105337539680268 0 NA NA -15.5728562624495 LTS-031 chr8 7686601 7693892 7292 * character(0) NA 0 NA 0.239 1 NA NA NA NA NA LTS-031 chr8 7693893 7752350 58458 * c(DEFB4A, SPAG11A) 0.236 1 NA 0.244913388407951 44 0.194764676134476 0 0 0 -6.53123053114678 LTS-031 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.413 1 NA NA NA NA NA LTS-031 chr8 8175295 9953689 1778395 * c(MIR4660, CLDN23, LOC157273, SGK223, LINC00599, MIR124-1, MSRA, MIR597, PPP1R3B, TNKS, ERI1, MFHAS1) 0.391292174227279 25 0.0962176352512019 0.874517865010711 930 2.09099409099583 4 3 1 -6.74662930365042 LTS-031 chr8 9953690 10065317 111628 * MSRA NA 0 NA 0.528 1 NA NA NA NA NA LTS-031 chr8 10065318 11606652 1541335 * c(MIR1322, TDH, PRSS55, C8orf74, GATA4, XKR6, MSRA, PINX1, BLK, MTMR9, MIR598, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, RP1L1) 0.39183589060258 31 0.0795181726710708 0.665624241534448 1362 0.377220853942968 1 1 0 -6.90974809933089 LTS-031 chr8 11606653 11607580 928 * GATA4 NA 0 NA 1.325 1 NA NA NA NA NA LTS-031 chr8 11607581 11708553 100973 * c(CTSB, FDFT1, NEIL2, GATA4) 0.400316856681571 23 0.0724556017796348 1.01363907129222 352 0.447998314679471 4 3 1 -6.73943945261718 LTS-031 chr8 11708554 11710077 1524 * CTSB NA 0 NA 0.627 1 NA NA NA NA NA LTS-031 chr8 11710078 16859688 5149611 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, DEFB109P1, DEFB130, FGF20, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, LONRF1) 0.407948277740109 48 0.0698294242630412 0.700674083907587 949 0.410363916977543 1 1 0 -6.86753501677497 LTS-031 chr8 16859689 16884750 25062 * MICU3 NA 0 NA 1.502 1 NA NA NA NA NA LTS-031 chr8 16884751 19316086 2431336 * c(NAT2, LOC100128993, VPS37A, FGL1, PSD3, MICU3, CNOT7, ASAH1, PCM1, ZDHHC2, PDGFRL, CSGALNACT1, MTUS1, SH2D4A, SLC7A2, NAT1, MTMR7) 0.398995626266035 49 0.105823989892343 0.916325135245886 1846 0.562684287043856 2 2 0 -6.79037536001576 LTS-031 chr8 19316087 19362768 46682 * CSGALNACT1 0.442 1 NA 0.748158585578357 3 0.201455536864424 1 1 0 -5.76461481596915 LTS-031 chr8 19362769 22022013 2659245 * c(LZTS1-AS1, NPM2, LZTS1, LGI3, DMTN, XPO7, GFRA2, LOC286114, LPL, ATP6V1B2, INTS10, CSGALNACT1, HR, SFTPC, FAM160B2, SLC18A1, NUDT18, REEP4, FGF17, DOK2) 0.434833716317038 45 0.0806379675970434 0.888573773267285 1649 0.391703853083691 2 1 1 -6.73688363119072 LTS-031 chr8 22022014 22022229 216 * character(0) NA 0 NA 2.102 1 NA NA NA NA NA LTS-031 chr8 22022230 23430963 1408734 * c(LOC100507156, SORBS3, PEBP4, EGR3, R3HCC1, RHOBTB2, SLC39A14, LOC254896, LOC286059, LOC389641, LOXL2, MIR320A, SLC25A37, C8orf58, PIWIL2, PPP3CC, BIN3, CCAR2, PDLIM2, BMP1, POLR3D, BIN3-IT1, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4, PHYHIP) 0.437794898850206 60 0.104936541221901 1.02382449489548 2437 0.487469391708096 3 2 1 -6.74220969268713 LTS-031 chr8 23430964 26372204 2941241 * c(PNMA2, ADAM28, NKX2-6, CDCA2, DPYSL2, ADAMDEC1, GNRH1, NEFM, NEFL, NKX3-1, KCTD9, PPP2R2A, EBF2, BNIP3L, STC1, DOCK5, ADAM7) 0.448820474390852 17 0.031970459710765 0.809553682379469 1910 2.12983620695151 2 1 1 -6.79537110427939 LTS-031 chr8 26372205 26434534 62330 * DPYSL2 NA 0 NA 1.169 1 NA NA NA NA NA LTS-031 chr8 26434535 26613957 179423 * c(ADRA1A, DPYSL2) 0.451904181391211 4 0.0514263227021597 1.25467001549302 142 0.474417184310133 6 3 3 -6.77418264947575 LTS-031 chr8 26613958 27101394 487437 * c(ADRA1A, STMN4) 0.428894255154544 12 0.0535063717531082 0.6473613984455 209 0.274065993089755 0 0 0 -6.75314665644529 LTS-031 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 1.238 1 NA NA NA NA NA LTS-031 chr8 27142392 30670398 3528007 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, DCTN6, RBPMS, CHRNA2, CLU, ESCO2, FBXO16, DUSP4, EPHX2, EXTL3, PTK2B, TRIM35, KIF13B, LEPROTL1, SCARA5, FAM183CP, GSR, GTF2E2, NUGGC, SCARA3, SARAF, PNOC, ELP3, PPP2CB, CCDC25, INTS9, PBK, ZNF395, LINC00589, MBOAT4, HMBOX1, FZD3, UBXN8) 0.438371453651967 69 0.0481232743183254 0.917215315869462 3258 0.434041521356029 2 1 1 -6.75802541650844 LTS-031 chr8 30670399 30689089 18691 * TEX15 NA 0 NA 0.719 1 NA NA NA NA NA LTS-031 chr8 30689090 33353080 2663991 * c(NRG1-IT3, PURG, NRG1, TEX15, WRN, TTI2, MAK16, FUT10) 0.413814998991521 12 0.0682448244235859 0.734283661529637 830 0.429395465810581 1 1 0 -6.74599391990974 LTS-031 chr8 33353081 35093085 1740005 * c(UNC5D, DUSP26, RNF122, TTI2, MAK16) 0.476221211532958 4 0.0242813371405558 1.09890676477475 218 0.706804837055963 4 2 2 -7.90632408807799 LTS-031 chr8 35093086 37455853 2362768 * c(UNC5D, KCNU1) 0.438675443186269 6 0.0300227691372176 0.670983293168021 474 0.285444195395884 0 0 0 -6.75518624897707 LTS-031 chr8 37455854 37455933 80 * character(0) NA 0 NA 0.754 1 NA NA NA NA NA LTS-031 chr8 37455934 38912128 1456195 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, HTRA4, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.439892042628489 29 0.036773169700914 1.00622383856275 2522 0.472504746414334 4 2 2 -6.76611360261384 LTS-031 chr8 38912129 38913088 960 * ADAM9 NA 0 NA 0.722 1 NA NA NA NA NA LTS-031 chr8 38913089 39627068 713980 * c(LOC100130964, ADAM3A, ADAM32, ADAM2, ADAM5, ADAM18, ADAM9) 0.432101688920483 10 0.039474886531397 0.780038968824097 421 0.363843268566269 2 1 1 -6.79185892964169 LTS-031 chr8 39627069 39634563 7495 * ADAM2 NA 0 NA 1.111 1 NA NA NA NA NA LTS-031 chr8 39634564 43047593 3413030 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, CHRNA6) 0.432785590878253 28 0.0515306838268364 0.927874107717461 2691 0.512329693720336 2 1 1 -6.76766762946991 LTS-031 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 1.02117069758896 149 0.368323344699573 3 NA NA -5.7651730352645 LTS-031 chr8 47752736 47759712 6977 * LINC00293 0.404 1 NA 0.425970803663085 23 0.240124160900609 0 0 0 -5.77710455814615 LTS-031 chr8 47759713 48114516 354804 * c(LOC100287846, LINC00293) 0.453630456770948 2 0.014142135623731 0.643832685269099 77 0.21359095094766 0 0 0 -7.33630169806037 LTS-031 chr8 48114517 48173114 58598 * character(0) NA 0 NA 1.736 1 NA NA NA NA NA LTS-031 chr8 48173115 49834145 1661031 * c(CEBPD, SPIDR, MCM4, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.480808172155469 4 0.0205 0.986195371794174 983 0.483565257376247 4 2 2 -8.62357121011928 LTS-031 chr8 49834146 49985287 151142 * C8orf22 NA 0 NA 0.279 1 NA NA NA NA NA LTS-031 chr8 49985288 57358647 7373360 * c(SBF1P1, LYPLA1, XKR4, PCMTD1, TMEM68, PXDNL, SDR16C5, SNORD54, NPBWR1, MRPL15, FAM150A, LYN, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, RP1, RPS20, SOX17, TCEA1, CHCHD7, RGS20, TGS1, ST18, RB1CC1) 0.410674610309031 48 0.0647502430237231 0.771821415828854 2672 0.38422083509991 1 1 0 -6.74556454496744 LTS-031 chr8 57358648 57388111 29464 * PENK NA 0 NA 0.908 1 NA NA NA NA NA LTS-031 chr8 57388112 80578384 23190273 * c(STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, MIR5681A, MIR5681B, LOC101241902, YTHDF3-AS1, NCOA2, ARFGEF1, COPS5, STMN2, C8orf34, ADHFE1, UBXN2B, CRH, RDH10, MCMDC2, CLVS1, SBSPON, CYP7A1, EYA1, RRS1, SULF1, TRAM1, LY96, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, STAU2, BHLHE22, LOC286177, NKAIN3, NA NA NA NA NA NA NA NA NA LTS-031 LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, HNF4G, IL7, XKR9, LOC392232, LOC401463, MIR124-2, MIR2052HG, ASPH, MYBL1, PI15, ZC2HC1A, LACTB2, PDE7A, GDAP1, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, CHD7, PKIA, C8orf44, JPH1, CPA6, PEX2, RAB2A, RPL7, SDCBP, PRDM14, SNHG6, SNORD87, UG0898H09, TCEB1, TERF1, TTPA, CA8, ZFHX4, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NSMAF, TRIM55, DNAJC5B, GGH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 TRPA1, FAM110B, MSC, KCNB2, CYP7B1, MTFR1, TOX) 0.426667490594088 96 0.0836124728376998 0.857565817433603 8161 0.452280501997364 2 1 1 -6.77243565073286 LTS-031 NA NA NA NA LTS-031 chr8 80578385 80676206 97822 * STMN2 NA 0 NA 1.298 1 NA NA NA NA NA LTS-031 chr8 80676207 82353914 1677708 * c(MIR5708, FABP5, HEY1, MRPS28, PMP2, PAG1, ZNF704, ZBTB10, TPD52) 0.452178817438613 11 0.0596782280994577 1.02904090053467 955 0.426708020447387 4 2 2 -6.78973890157198 LTS-031 chr8 82353915 82441857 87943 * c(FABP4, PMP2, FABP9, FABP12) 0.432937922797154 5 0.0704144871457572 0.56698764493282 124 0.253551467961288 0 0 0 -6.75146488220386 LTS-031 chr8 82441858 82443410 1553 * FABP12 NA 0 NA 0.901 1 NA NA NA NA NA LTS-031 chr8 82443411 92410396 9966986 * c(C8orf88, LRRC69, REXO1L2P, MIR4661, LINC00534, WWP1, SLC26A7, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ATP6V0D2, REXO1L1P, SLC10A5, IMPA1, CA13, C8orf59, MMP16, NBN, RMDN1, OTUD6B, CNGB3, TMEM55A, SNX16, NECAB1, FABP12, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, RIPK2, CPNE3, CHMP4C) 0.417860432712445 58 0.0941378685440184 0.88444073525364 3148 0.482694170818028 2 1 1 -6.7652018310307 LTS-031 chr8 92967182 93115161 147980 * RUNX1T1 0.378 1 NA 1.52960186514131 245 0.731425475307228 8 8 0 -5.76446360485775 LTS-031 chr8 93115162 110376975 17261814 * c(MIR875, LOC100288748, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR378D2, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, CTHRC1, OSR2, COX6C, FAM92A1, NDUFAF6, ABRA, BAALC-AS2, ANKRD46, C8orf37, VPS13B, TMEM74, SNX31, DPYS, ERICH5, ZFPM2, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, ANGPT1, TRIQK, DPY19L4, FBXO43, LRP12, RSPO2, EIF3E, KCNS2, C8orf87, RBM12B, NA NA NA NA NA NA NA NA NA LTS-031 GDF6, MATN2, FLJ46284, FLJ42969, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, PDP1, ESRP1, OXR1, LAPTM4B, RBM12B-AS1, INTS8, ENY2, RPL30, LINC01298, SDC2, LINC00535, SPAG1, STK3, MIR599, KLF10, TRHR, UQCRB, YWHAZ, PLEKHF2, NIPAL2, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, NUDCD1, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, PKHD1L1, TP53INP1, EMC2, RIMS2, PTDSS1) 0.42048086945912 119 0.0787251162296173 1.08256207586252 7958 1.19466671406134 4 2 2 -6.76723704755614 LTS-031 NA NA NA NA LTS-031 chr8 110376976 110393544 16569 * PKHD1L1 NA 0 NA 0.658 1 NA NA NA NA NA LTS-031 chr8 110393545 114628160 4234616 * c(MIR2053, CSMD3, KCNV1, SYBU, EBAG9, PKHD1L1) 0.397623108967616 16 0.0735604060166428 0.904799053748394 1204 0.411870921720151 2 2 0 -6.83876623338097 LTS-031 chr8 114628161 114628203 43 * character(0) NA 0 NA 1.621 1 NA NA NA NA NA LTS-031 chr8 114628204 130496330 15868127 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, MIR3610, ZHX1-C8orf76, MIR4663, PCAT1, LINC00536, TRIB1, COLEC10, RNF139, ZHX1, MAL2, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, SLC30A8, EXT1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, MYC, NDUFB9, NOV, TNFRSF11B, ENPP2, POU5F1B, TRMT12, WDYHV1, SAMD12-AS1, PVT1, RAD21, HAS2-AS1, RAD21-AS1, NA NA NA NA NA NA NA NA NA LTS-031 DEPTOR, FER1L6, SNTB1, SQLE, TAF2, TRPS1, CASC8, LINC00977, COL14A1, DSCC1, DERL1, TATDN1, UTP23, C8orf76, FAM83A, EIF3H, MED30, TBC1D31, MTSS1, KIAA0196) 0.42658894259109 90 0.0660612671028641 1.11296682134459 5084 0.869738225887166 4 2 2 -6.75414927943439 LTS-031 NA NA NA NA LTS-031 chr8 130496331 133906192 3409862 * c(ASAP1-IT2, MIR5194, HHLA1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, ASAP1, PHF20L1, FAM49B, GSDMC, TG, OC90, HPYR1) 0.41688756269488 41 0.0559083963326422 0.981621807209645 1579 0.462113442168984 3 2 1 -6.7587434858409 LTS-031 chr8 133906193 134538231 632039 * c(NDRG1, ST3GAL1, SLA, TG, WISP1) 0.416984511129168 10 0.0625069773883062 1.33539997239553 681 0.552005545700617 6 4 2 -6.74215739812403 LTS-031 chr8 135490039 140743305 5253267 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, TRAPPC9) 0.402918098354084 31 0.115052274234157 0.953317111513345 904 0.484381179575175 3 2 1 -6.77998095507581 LTS-031 chr8 140743306 140743316 11 * TRAPPC9 NA 0 NA 1.659 1 NA NA NA NA NA LTS-031 chr8 140743317 142445040 1701724 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.41695353699107 37 0.0547968538804482 1.22892596356284 1254 0.553954326372457 6 4 2 -6.76542715520239 LTS-031 chr8 142445041 142445224 184 * MROH5 NA 0 NA 0.871 1 NA NA NA NA NA LTS-031 chr8 142445225 144520344 2075120 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, RHPN1, TOP1MT, LYPD2, CYP11B1, CYP11B2, TSNARE1, ZC3H3, ARC, GLI4, GML, C8orf31, ZFP41, GPIHBP1, MROH5, MAFA, LY6E, LY6H, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, RHPN1-AS1, ZNF696, PSCA, LY6D, JRK) 0.417768896723736 54 0.0557364894334723 1.01797582490695 1783 0.56315148943792 3 2 1 -6.75804068093896 LTS-031 chr8 144520345 144522248 1904 * ZC3H3 NA 0 NA 1.695 1 NA NA NA NA NA LTS-031 chr8 144522249 144522457 209 * ZC3H3 0.305269020278495 2 0.176776695296637 1.66296494684311 6 0.54964440019586 7 6 1 -6.733137348795 LTS-031 chr8 144522458 144642596 120139 * c(ZC3H3, GSDMD) 0.467 1 NA 1.34646519957646 127 0.573913141479836 6 6 0 -5.76444394097183 LTS-031 chr8 144642597 144687761 45165 * c(EEF1D, MROH6, PYCRL, GSDMD, TIGD5, NAPRT) 0.459113796114212 19 0.0348221042926533 1.32338160946292 384 0.534747469126621 6 3 3 -6.93321346899891 LTS-031 chr8 144687762 144687853 92 * PYCRL NA 0 NA 2.687 1 NA NA NA NA NA LTS-031 chr8 144687854 144691861 4008 * PYCRL 0.437290143324832 2 0.0424264068711929 2.27193464997709 49 0.814343011246481 11 6 5 -6.7332293730115 LTS-031 chr8 144691862 144694728 2867 * character(0) NA 0 NA 1.224 1 NA NA NA NA NA LTS-031 chr8 144694729 144873884 179156 * c(FAM83H-AS1, CCDC166, MIR4664, MAPK15, SCRIB, ZNF707, BREA2, FAM83H, TSTA3, ZNF623) 0.43623709895266 8 0.0376864412905073 1.0179266683649 504 0.412319952831859 4 2 2 -6.73952082882432 LTS-031 chr8 144873885 144940226 66342 * c(MIR937, PUF60, SCRIB, NRBP2, EPPK1) 0.473722444875979 2 0.0431335136523794 1.3137252781079 385 0.475354650042576 6 3 3 -7.10542785602684 LTS-031 chr8 144940227 144940475 249 * EPPK1 NA 0 NA 0.505 1 NA NA NA NA NA LTS-031 chr8 144940476 144996706 56231 * c(PLEC, EPPK1) 0.442326562828354 24 0.0404227434547161 0.779328400012618 316 0.280106410844921 2 1 1 -6.7437098730184 LTS-031 chr8 144996707 146171437 1174731 * c(MIR939, MIR1234, MFSD3, CYC1, ADCK5, BOP1, FBXL6, OPLAH, GPT, COMMD5, GRINA, CPSF1, HSF1, ZNF517, WDR97, TMEM249, SPATC1, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, SCX, MIR661, MROH1, ZNF7, ZNF16, SLC52A2, ARHGAP39, ZNF34, SHARPIN, SCRT1, MAF1, PARP10, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.450131543875985 76 0.0354852156019347 1.15087968352407 3576 0.472429962855433 4 2 2 -6.80094220661554 LTS-031 chr8 146171438 146280905 109468 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 1.1482936129343 257 0.479743682640595 4 NA NA -5.7648856488256 LTS-031 chr9 14732 14764 33 * WASH1 0.222 1 NA 4.172 1 NA NA NA NA NA LTS-031 chr9 14765 1057586 1042822 * c(WASH1, DMRT2, C9orf66, DMRT1, FOXD4, KANK1, CBWD1, DMRT3, FAM138C, DOCK8) 0.453677285535148 29 0.0344418908070468 0.960126069950255 772 0.599603011759941 2 1 1 -6.8599869010984 LTS-031 chr9 2028932 3218567 1189636 * c(KCNV2, VLDLR-AS1, SMARCA2, VLDLR, PUM3) 0.45442743993292 12 0.0353446236964326 1.46508221421872 498 0.600896023019015 8 4 4 -6.85748029906187 LTS-031 chr9 3218568 12709849 9491282 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, GLIS3, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, RFX3, RLN1, RLN2, SLC1A1, TYRP1, ERMP1, PDCD1LG2, GLIS3-AS1, TPD52L3, IL33, TMEM261) 0.425600576480337 56 0.0549528251049297 1.11699060562038 3112 0.565781097761594 4 2 2 -6.76981515538497 LTS-031 chr9 12709850 14082238 1372389 * c(LINC00583, LURAP1L, LINC01235, NFIB, TYRP1, MPDZ) 0.360241442339671 8 0.0550128231804705 1.39906219328473 360 0.666090546648091 8 6 2 -6.763331897445 LTS-031 chr9 14082239 14088071 5833 * NFIB 0.325 1 NA 2.48442568738046 128 1.36437455474201 16 16 0 -5.76441022573658 LTS-031 chr9 14088072 14088189 118 * NFIB NA 0 NA 1.671 1 NA NA NA NA NA LTS-031 chr9 14088190 18906794 4818605 * c(C9orf92, MIR3152, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, NFIB, BNC2, CNTLN, SH3GL2, SNAPC3, ADAMTSL1, CER1) 0.410598597323425 28 0.0537821762926389 1.31948130199273 1848 0.666551947700754 6 4 2 -6.73378876725471 LTS-031 chr9 18906795 19786942 880148 * c(RRAGA, PLIN2, SAXO1, SLC24A2, ACER2, HAUS6, DENND4C, RPS6, SCARNA8, ADAMTSL1) 0.395834593119806 19 0.0657079752518361 1.01790052693012 864 0.621347092326055 4 3 1 -6.74208391883469 LTS-031 chr9 19786943 19895723 108781 * SLC24A2 NA 0 NA 2.257 1 NA NA NA NA NA LTS-031 chr9 19895724 21005308 1109585 * c(MIR4473, MIR4474, HACD4, MLLT3, FOCAD, MIR491) 0.390415205573584 12 0.0741780719865134 1.38593772242503 462 0.657350150302795 7 5 2 -6.74657284018302 LTS-031 chr9 21005309 21351324 346016 * c(IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, KLHL9) 0.402 1 NA 1.04610091304025 336 0.767302276122279 4 4 0 -5.76537766669207 LTS-031 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.565 1 NA NA NA NA NA LTS-031 chr9 21367330 21441196 73867 * c(IFNA1, IFNA2, IFNA8, IFNA13) NA 0 NA 0.515082446169128 75 0.343122843549895 0 NA NA -5.78402936766194 LTS-031 chr9 21441197 21441212 16 * IFNA1 NA 0 NA 1.846 1 NA NA NA NA NA LTS-031 chr9 21441213 22006336 565124 * c(CDKN2B-AS1, CDKN2A, CDKN2B, IFNE, IFNA1, MIR31, MTAP, CDKN2A-AS1, MIR31HG) 0.370378168997863 8 0.0761516344445175 1.42873046090281 331 0.547070802769348 7 5 2 -6.74345898299437 LTS-031 chr9 22006337 22008619 2283 * c(CDKN2B-AS1, CDKN2B, MTAP) NA 0 NA 0.902 1 NA NA NA NA NA LTS-031 chr9 22008620 32629615 10620996 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, IZUMO3, LOC100506422, TOPORS, CDKN2B, TAF1L, LINC00032, LINGO2, ELAVL2, C9orf72, DDX58, TUSC1, LINC01242, LINC01239, MTAP, NDUFB6, ACO1, EQTN, IFNK, DMRTA1, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.43213952369131 43 0.084249596218032 1.1295653599224 1778 0.495838449233912 4 2 2 -6.75198542966925 LTS-031 chr9 32629616 32629883 268 * TAF1L NA 0 NA 0.816 1 NA NA NA NA NA LTS-031 chr9 32629884 32973717 343834 * c(TAF1L, TMEM215, APTX) 0.360497263685545 5 0.204669245369205 0.670174889114119 192 0.341254849569834 1 1 0 -6.80784746849928 LTS-031 chr9 32973718 32974355 638 * APTX NA 0 NA 1.855 1 NA NA NA NA NA LTS-031 chr9 32974356 33528853 554498 * c(B4GALT1, SPINK4, DNAJA1, AQP3, AQP7, SUGT1P1, ANKRD18B, NFX1, CHMP5, APTX, SMU1, BAG1, NOL6) 0.411909192437895 21 0.0770393529617293 1.09847832661251 917 0.551519388255016 4 3 1 -6.76461215380963 LTS-031 chr9 33528854 33533384 4531 * ANKRD18B NA 0 NA 0.287 1 NA NA NA NA NA LTS-031 chr9 33533385 33750870 217486 * c(PTENP1, ANXA2P2, ANKRD18B, PRSS3) 0.432413071658608 4 0.0237960080685816 0.610669496555957 182 0.4574996751534 0 0 0 -6.77685608380481 LTS-031 chr9 33750871 34723744 972874 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBE2R2, UBAP2, PRSS3, KIAA1161, CCL19, CCL21, C9orf24) 0.381297437232999 29 0.0850849474105853 0.976689815973195 1546 0.453889698972239 2 2 0 -6.77946142997513 LTS-031 chr9 34723745 34723812 68 * FAM205A NA 0 NA 0.429 1 NA NA NA NA NA LTS-031 chr9 34723813 34726433 2621 * FAM205A 0.473223065209735 6 0.028572714256787 0.334886592766798 66 0.222890358445833 0 0 0 -7.51494679798629 LTS-031 chr9 34726434 34833376 106943 * c(FAM205A, FAM205BP) 0.423 1 NA 0.653120773636467 83 0.258982664045737 0 0 0 -5.76448368419004 LTS-031 chr9 34833377 34835727 2351 * FAM205BP 0.30889706905014 2 0.0014142135623731 0.346287798765462 64 0.163457574679909 10 8 2 -6.87644402311451 LTS-031 chr9 34835728 34981701 145974 * c(PHF24, FAM205BP) NA 0 NA 0.759516427803373 144 0.292407154590896 1 NA NA -5.76441489119774 LTS-031 chr9 34981702 35910730 929029 * c(MIR4667, CREB3, UNC13B, C9orf131, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM221B, OR13J1, NPR2, TMEM8B, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.455365293204939 32 0.0581238163250964 1.08504663166106 2625 0.506825766171686 4 2 2 -6.78273163843673 LTS-031 chr9 35910731 35957053 46323 * LINC00961 NA 0 NA 0.397 1 NA NA NA NA NA LTS-031 chr9 35957054 38414117 2457064 * c(GNE, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, TRMT10B, ALDH1B1, FRMPD1, FBXO10, IGFBPL1, TOMM5, PAX5, EXOSC3, OR2S2, POLR1E, SHB, DCAF10, ZCCHC7, RECK, CCIN, SLC25A51, GRHPR, MELK, ZBTB5) 0.434682771163241 27 0.0536273413278314 0.909866250333919 1969 0.816154372387918 2 1 1 -6.73972666993811 LTS-031 chr9 38414118 43818062 5403945 * c(FAM95C, FAM201A, ANKRD18A, ZNF658, LOC286297, IGFBPL1, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.427898180510461 6 0.0796276752559477 0.592991397836478 324 0.32876669328521 0 0 0 -6.9669024147224 LTS-031 chr9 43818063 44175697 357635 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.96305851395249 37 1.02769201679364 3 NA NA -5.76454962194057 LTS-031 chr9 65602571 66457127 854557 * LOC286297 0.273 1 NA 1.77800390418841 3 0.379360426683297 10 10 0 -5.76446163721113 LTS-031 chr9 66457128 73375843 6918716 * c(FRG1HP, FAM27B, LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, C9orf135, TMEM252, SMC5, FXN, MAMDC2, LOC286297, FOXD4L3, APBA1, AQP7P1, PTAR1, LOC440896, PTGER4P2-CDK2AP2P2, C9orf135-AS1, PGM5, PRKACG, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, KLF9, ANKRD20A4, TRPM3, PIP5K1B, FAM189A2, TJP2) 0.389443189504431 57 0.110444845555483 1.01312540436644 1650 0.467214969079438 3 2 1 -6.8180503073442 LTS-031 chr9 73375844 77692257 4316414 * c(TMC1, CARNMT1, C9orf57, C9orf85, TRPM6, ALDH1A1, TMEM2, ANXA1, MIR204, ABHD17B, NMRK1, C9orf40, RORB, ZFAND5, TRPM3, GDA) 0.446739414039352 36 0.0444023004552049 0.864921995491046 1634 0.417553388528183 2 1 1 -6.75478039632179 LTS-031 chr9 77692258 77692404 147 * NMRK1 NA 0 NA 2.299 1 NA NA NA NA NA LTS-031 chr9 77692405 79002257 1309853 * c(OSTF1, PCSK5, NMRK1, RFK) 0.469903628077016 6 0.0112723851365479 1.1363478896554 456 0.561122823367052 4 2 2 -9.52765235481053 LTS-031 chr9 79002258 79002372 115 * RFK NA 0 NA 0.895 1 NA NA NA NA NA LTS-031 chr9 79002373 79465583 463211 * c(PRUNE2, GCNT1, PCA3, RFK, RPSAP9) 0.435952001744667 30 0.0461962331150819 0.737196748096047 501 0.3602470241642 0 0 0 -6.77106380022044 LTS-031 chr9 79465584 79469003 3420 * PRUNE2 NA 0 NA 0.926 1 NA NA NA NA NA LTS-031 chr9 79469004 84530373 5061370 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, PSAT1, SPATA31D5P, FOXB2, TLE1, TLE4, CEP78, GNA14) 0.452856618783269 10 0.0374386906228778 1.03215468137552 1469 0.508831149523396 4 2 2 -6.86845674853389 LTS-031 chr9 84530374 84530454 81 * SPATA31D5P NA 0 NA 0.405 1 NA NA NA NA NA LTS-031 chr9 84530455 84610243 79789 * c(SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) 0.327 1 NA 0.481781377922884 134 0.131359908211582 0 0 0 -5.99738837260086 LTS-031 chr9 84610244 84675661 65418 * character(0) NA 0 NA 0.755 1 NA NA NA NA NA LTS-031 chr9 84675662 88881193 4205532 * c(RASEF, AGTPBP1, FRMD3, UBQLN1, HNRNPK, LOC389765, C9orf153, MIR7-1, IDNK, NTRK2, GOLM1, KIF27, NAA35, SLC28A3, RMI1, GKAP1, ISCA1, C9orf64) 0.397225068797567 36 0.0927877762885361 0.772398772419769 1981 0.500854805998713 1 1 0 -6.76381433311417 LTS-031 chr9 88881194 88881747 554 * c(GOLM1, ISCA1) NA 0 NA 1.401 1 NA NA NA NA NA LTS-031 chr9 88881748 90499009 1617262 * c(GAS1RR, CTSL, CTSLP8, DAPK1, GAS1, SPATA31E1, CTSL3P, LOC392364, C9orf170, LOC440173, LOC494127, GOLM1, ZCCHC6, ISCA1) 0.429081491330795 12 0.0523542710480214 0.939950499837456 637 0.492638115091978 3 2 1 -6.74331368181388 LTS-031 chr9 90499010 90499494 485 * SPATA31E1 NA 0 NA 0.539 1 NA NA NA NA NA LTS-031 chr9 90499495 90584861 85367 * c(CDK20, SPATA31E1, SPATA31C1) 0.372349535894886 10 0.0632157680751672 0.569537045992694 165 0.276746770832646 2 2 0 -6.85538493926122 LTS-031 chr9 90584862 97061995 6477134 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, NXNL2, MIRLET7DHG, FAM120AOS, LINC00475, ZNF169, ECM2, S1PR3, SUSD3, FAM120A, BICD2, CDK20, C9orf47, LOC286238, MIR4290HG, IARS, LINC01501, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, C9orf129, NFIL3, NINJ1, ROR2, OMD, OGN, PHF2, NA NA NA NA NA NA NA NA NA LTS-031 SHC3, DIRAS2, ASPN, AUH, NOL8, BARX1, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZNF484, CARD19, FGD3) 0.406556915013507 90 0.05026375377765 0.846000415788973 3888 0.37041146651713 2 1 1 -7.00008123978121 LTS-031 NA NA NA NA LTS-031 chr9 97061996 97091646 29651 * c(ZNF169, NUTM2F) NA 0 NA 0.42344914739513 101 0.265508414216578 0 NA NA -5.80955687008355 LTS-031 chr9 97091647 97136797 45151 * LOC100132077 NA 0 NA 1.124 1 NA NA NA NA NA LTS-031 chr9 97136798 99700947 2564150 * c(LINC00476, LOC100132781, LINC00092, MIR2278, MIR3074, LOC100507346, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, FANCC, FBP1, ZNF510, HABP4, HSD17B3, ERCC6L2, MIR23B, LOC441454, LOC441455, NUTM2G, PTCH1, MFSD14B, C9orf3, CDC14B, FBP2) 0.391448966836131 20 0.0738857403805291 0.842557670985122 1814 0.430719615952864 2 2 0 -6.79915101823439 LTS-031 chr9 99700948 99961959 261012 * c(CTSV, GAS2L1P2, NUTM2G, MFSD14C) 0.316826036830728 2 0.140714249456123 0.49828089582615 191 0.357687885407542 2 2 0 -7.17951304622874 LTS-031 chr9 99961960 100041690 79731 * c(LOC100499484, LOC100499484-C9ORF174) NA 0 NA 1.195 1 NA NA NA NA NA LTS-031 chr9 100041691 107266596 7224906 * c(CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, GRIN3A, COL15A1, OR13F1, CYLC2, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.382892826019707 92 0.0875151771698445 0.791216538692257 4115 0.364099036636212 1 1 0 -6.8742903010879 LTS-031 chr9 107266597 107266647 51 * OR13F1 NA 0 NA 0.485 1 NA NA NA NA NA LTS-031 chr9 107266648 107457836 191189 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.407384862533807 25 0.0831348903890539 0.455346115232507 215 0.251015847864546 0 0 0 -7.03444148371944 LTS-031 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.454 1 NA NA NA NA NA LTS-031 chr9 107509996 108234328 724333 * c(ABCA1, SLC44A1, NIPSNAP3A, NA, NIPSNAP3B, FSD1L) 0.394428327199361 15 0.11852176814328 0.938549954926084 756 0.435594349869198 2 2 0 -6.7715777739452 LTS-031 chr9 108234329 108241521 7193 * FSD1L NA 0 NA 0.501 1 NA NA NA NA NA LTS-031 chr9 108241522 109685760 1444239 * c(MIR548Q, FKTN, TMEM38B, ZNF462, TAL2, FSD1L) NA 0 NA 0.675395712281996 504 0.337021509219573 0 NA NA -5.77803307593016 LTS-031 chr9 109685761 111899714 2213954 * c(MIR548Q, ACTL7B, ACTL7A, TMEM245, FRRS1L, MIR32, FAM206A, ZNF462, RAD23B, IKBKAP, CTNNAL1, KLF4) 0.372338852142888 14 0.121314865961665 1.03219140250487 1114 3.57000276949126 2 2 0 -6.7363044733207 LTS-031 chr9 111899715 113128559 1228845 * c(AKAP2, PALM2, FRRS1L, TXNDC8, C9orf152, PALM2-AKAP2, EPB41L4B, PTPN3, TXN, SVEP1) 0.359479916646004 13 0.075756018632016 0.835044077710966 944 0.368525734825152 2 2 0 -6.75446950732875 LTS-031 chr9 113128560 113128675 116 * SVEP1 NA 0 NA 0.367 1 NA NA NA NA NA LTS-031 chr9 113128676 113189991 61316 * SVEP1 0.439920596831552 4 0.0760898591578843 0.508394811998159 136 0.146461117848371 0 0 0 -6.83176436160606 LTS-031 chr9 113189992 113189994 3 * SVEP1 NA 0 NA 0.989 1 NA NA NA NA NA LTS-031 chr9 113189995 114695329 1505335 * c(MIR4668, ZNF483, C9orf84, LPAR1, PTGR1, KIAA0368, OR2K2, GNG10, MUSK, DNAJC25, DNAJC25-GNG10, LRRC37A5P, UGCG, SVEP1) 0.389779702484178 35 0.0818977431687495 0.764155240147227 1279 0.374918453811701 1 1 0 -6.80128410952966 LTS-031 chr9 114695330 114695411 82 * UGCG NA 0 NA 1.327 1 NA NA NA NA NA LTS-031 chr9 114695412 117074803 2379392 * c(FAM225B, MIR3134, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, SUSD1, UGCG, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.403822480360221 55 0.0872930086563028 0.936938447387487 3059 0.407634089294988 3 2 1 -6.80480183873311 LTS-031 chr9 117074804 117089956 15153 * ORM1 0.480806504495005 2 0.00777817459305207 0.211829243571266 47 0.19270652988547 0 0 0 -12.8005950678273 LTS-031 chr9 117089957 117092184 2228 * c(ORM1, ORM2) NA 0 NA 0.494 1 NA NA NA NA NA LTS-031 chr9 117092185 117433685 341501 * c(LOC100505478, TMEM268, WHRN, ORM1, ORM2, AKNA, ATP6V1G1) 0.420525295366666 33 0.0627213504560473 1.01178072596347 549 0.510194498186594 3 2 1 -6.74283759476392 LTS-031 chr9 117433686 117433746 61 * LOC100505478 NA 0 NA 0.754 1 NA NA NA NA NA LTS-031 chr9 117433747 118190153 756407 * c(LOC100505478, TNC, DEC1, TNFSF8, TNFSF15) 0.381796191849155 15 0.0846694975154796 0.703601611670689 405 0.312581911367277 1 1 0 -6.86667261360265 LTS-031 chr9 118916196 123940622 5024427 * c(SNORA70C, ASTN2-AS1, LOC100288842, CNTRL, BRINP1, MEGF9, TRIM32, ASTN2, PSMD5-AS1, PHF19, FBXW2, MIR147A, PAPPA, RAB14, CDK5RAP2, PSMD5, TLR4, TRAF1, C5) 0.332214525353241 26 0.119734430495801 0.882088272756298 2008 0.392265266775948 2 2 0 -6.79076163227464 LTS-031 chr9 123940623 123940721 99 * RAB14 NA 0 NA 0.939 1 NA NA NA NA NA LTS-031 chr9 123940722 124855850 915129 * c(DAB2IP, TTLL11, STOM, GGTA1P, GSN, RAB14) 0.419178054043965 20 0.0777886982726114 1.14883397813737 715 0.540684974574676 5 3 2 -6.75886092079103 LTS-031 chr9 124855851 124882242 26392 * TTLL11 NA 0 NA 0.374 1 NA NA NA NA NA LTS-031 chr9 124882243 125273502 391260 * c(MIR4478, MORN5, LHX6, OR1J2, OR1J1, NDUFA8, PTGS1, MRRF, RBM18) 0.418190529749352 13 0.0504535836444162 0.778981725357971 513 0.322471509070805 1 1 0 -6.73433931856558 LTS-031 chr9 125273503 125563109 289607 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1B1, OR1L6, OR5C1, OR1K1) 0.411003175088679 25 0.0547524733079094 0.520770795884244 361 0.245538475125601 0 0 0 -7.01640678859425 LTS-031 chr9 125563110 129597677 4034568 * c(LOC100129034, MIR181A2HG, RABEPK, ZBTB6, NEK6, RPL35, OLFML2A, ZBTB43, RABGAP1, NR5A1, GAPVD1, NR6A1, GOLGA1, GPR21, CRB2, SCAI, HSPA5, ADGRD2, OR1K1, LMX1B, WDR38, MIR181A2, MIR181B2, PDCL, PBX3, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, NRON, SNORD90, MIR601, MAPKAP1, MIR600HG, ARPC5L, MVB12B, LHX2) 0.391417756266446 58 0.083163875496142 0.845004104132857 3496 0.403142621288294 2 2 0 -6.79385918155933 LTS-031 chr9 129597678 133777921 4180244 * c(LOC100272217, SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, CDK9, ZER1, USP20, SLC27A4, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, ABL1, PHYHD1, CIZ1, SNORA65, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA2, CFAP157, NTMT1, PKN3, SLC2A8, ST6GALNAC6, QRFP, SWI5, NA NA NA NA NA NA NA NA NA LTS-031 C9orf50, PTGES2-AS1, IER5L, LCN2, FAM102A, ZBTB34, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, GPR107, PRDM12, RPL12, SET, FAM129B, SPTAN1, STXBP1, ZNF79, C9orf16, PTGES2, URM1, GARNL3, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, WDR34, LRSAM1, PTGES, RALGPS1) 0.403019736847941 165 0.0592541452764818 0.964799258363909 7765 0.483327659638224 3 2 1 -6.84732216497458 LTS-031 NA NA NA NA LTS-031 chr9 133777922 133997627 219706 * c(LAMC3, AIF1L, FIBCD1) 0.383508539900735 16 0.0504016782128003 0.716125246560065 381 0.389006618406743 2 2 0 -6.81637406288847 LTS-031 chr9 133997628 137967461 3969834 * c(RNU6ATAC, MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, CEL, CELP, POMT1, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, AK8, DBH, STKLD1, SARDH, FCN1, FCN2, SETX, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, FAM78A, RAPGEF1, OBP2B, CFAP77, TMEM8C, BARHL1, REXO4, RALGDS, RPL7A, RXRA, FAM163B, DDX31, SURF1, NA NA NA NA NA NA NA NA NA LTS-031 SURF2, SURF4, MED22, SURF6, TSC1, TTF1, VAV2, BRD3, NUP214, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, GTF3C5, GTF3C4, MED27, ADAMTSL2) 0.403801282556239 166 0.0727996828967332 0.931244905628632 5471 0.577773969877163 3 2 1 -6.82603705702598 LTS-031 NA NA NA NA LTS-031 chr9 137967462 137967557 96 * OLFM1 NA 0 NA 0.523 1 NA NA NA NA NA LTS-031 chr9 137967558 140127440 2159883 * c(LOC100128593, LINC01502, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, PPP1R26-AS1, MIR4673, MIR4674, MIR4479, UBAC1, OLFM1, AGPAT2, SDCCAG3, MAN1B1, NACC2, C9orf116, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, OBP2A, GLT6D1, CYSRT1, LCN15, C9orf172, LRRC26, LCN9, LCN1, LOC401557, NA NA NA NA NA NA NA NA NA LTS-031 LCNL1, C9orf139, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, RNF224, SNAPC4, SNORA17A, SNORA17B, TRAF2, RNF208, DNLZ, C8G, LHX3, CCDC183, SNHG7, TMEM141, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, TMEM203, ENTPD2, PPP1R26, SEC16A) 0.393617152386355 135 0.0588606284078044 0.849900418400591 5451 1.18686865601964 4 3 1 -6.79468415475236 LTS-031 NA NA NA NA LTS-031 chr9 140127441 140127444 4 * SLC34A3 NA 0 NA 1.178 1 NA NA NA NA NA LTS-031 chr9 140127445 140741064 613620 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, PNPLA7, ENTPD8, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, MRPL41, MIR602, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.380399235080064 25 0.0593218621869993 0.972997227185837 1348 0.400861416799951 2 2 0 -6.78047698617867 LTS-031 chr9 140741065 140772319 31255 * CACNA1B 0.125 1 NA 0.151 1 NA NA NA NA NA LTS-031 chr9 140772320 141000106 227787 * CACNA1B 0.39794899111343 5 0.0621023348997443 0.738749051350268 232 0.308986206848365 1 1 0 -6.79342822421272 LTS-031 chr9 141000107 141071759 71653 * c(TUBBP5, CACNA1B) NA 0 NA 0.758743769855675 115 0.267466569266249 1 NA NA -5.76441618383717 LTS-031 chr10 94832 323283 228452 * c(ZMYND11, DIP2C, TUBB8) 0.485 1 NA 0.915540295250081 201 0.368293681889064 2 2 0 -5.76649372739262 LTS-031 chr10 323284 4882008 4558725 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.44296852590432 69 0.0423509169971913 1.05373759899324 1591 0.555783596358304 4 2 2 -6.75720003645916 LTS-031 chr10 4882009 5091015 209007 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.460809607725406 8 0.0459345419358585 0.49865942695924 243 0.368534980382414 0 0 0 -6.93109500215809 LTS-031 chr10 5091016 5120124 29109 * AKR1C3 NA 0 NA 1.107 1 NA NA NA NA NA LTS-031 chr10 5120125 13175622 8055498 * c(MIR3155A, LINC00707, MIR4480, MIR3155B, OPTN, NET1, CELF2, AKR1C4, NUDT5, UCN3, SFTA1P, PROSER2-AS1, KIN, LINC00710, PROSER2, UPF2, GATA3, GDI2, NA, AKR1C8P, IL2RA, IL15RA, ITIH2, LOC399715, GATA3-AS1, PRKCQ-AS1, CELF2-AS2, ATP5C1, CALML5, PFKFB3, ANKRD16, FAM208B, SEC61A2, DHTKD1, PRKCQ, CAMK1D, SFMBT2, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, CCDC3, TAF3, FBXO18, RBM17, AKR1C3, CDC123, USP6NL) 0.435309569879914 94 0.0567391047898551 0.966401045462932 4015 0.466708353974258 3 2 1 -6.75342587695844 LTS-031 chr10 13175623 13178674 3052 * OPTN NA 0 NA 0.519 1 NA NA NA NA NA LTS-031 chr10 13178675 17813397 4634723 * c(ST8SIA6-AS1, PPIAP30, MIR1265, OPTN, RPP38, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, ST8SIA6, C1QL3, ACBD7, CDNF, HSPA14, PHYH, OLAH, MCM10, FRMD4A, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, ITGA8, PRPF18, HACD1, PTER, NMT2) 0.442908531414773 73 0.0679790991023276 0.882033071747915 3034 0.52612427865637 2 1 1 -6.73603656233349 LTS-031 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.176 1 NA NA NA NA NA LTS-031 chr10 17842448 18196475 354028 * c(MRC1, NA, TMEM236) 0.49 1 NA 0.272633134011975 150 0.286409017533291 0 0 0 -7.25880086189372 LTS-031 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.04 1 NA NA NA NA NA LTS-031 chr10 18198201 25464401 7266201 * c(NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, CACNB2, THNSL1, MLLT10, PLXDC2, SPAG6) 0.429000185566564 66 0.0752385607626902 0.944798106190019 3097 0.552409157388714 3 2 1 -6.76230464173919 LTS-031 chr10 25464402 26856780 1392379 * c(GPR158-AS1, GAD2, MYO3A, APBB1IP, GPR158) 0.386531963941282 3 0.109134473624668 0.62815598575476 630 0.275489804506462 0 0 0 -6.87715583175518 LTS-031 chr10 26856781 26986714 129934 * c(PDSS1, LINC00264, LINC00202-2) NA 0 NA 1.668 1 NA NA NA NA NA LTS-031 chr10 26986715 36810818 9824104 * c(ABI1, MIR938, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, ARMC4, MTPAP, PARD3, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ACBD5, ARHGAP12) 0.429135949071636 53 0.065973177027355 0.944969188068016 4059 0.559387991924139 3 2 1 -6.77128965973919 LTS-031 chr10 36810819 36812775 1957 * character(0) NA 0 NA 0.33488162152058 48 0.181044879040945 0 NA NA -5.77992972250515 LTS-031 chr10 36812776 38672204 1859429 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, SEPT7P9, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.406631169057474 37 0.0850991296187091 0.835020269070129 669 0.348514751286832 1 1 0 -6.82064868531026 LTS-031 chr10 38672205 38740384 68180 * c(SEPT7P9, LINC00999) NA 0 NA 0.580069837152035 3 0.355647765820809 0 NA NA -5.76830993459745 LTS-031 chr10 42379861 42965636 585776 * LOC441666 0.271548968424602 9 0.106367418779332 0.814757264788847 60 0.599179441492567 4 4 0 -6.84695268359898 LTS-031 chr10 42965637 43085513 119877 * c(ZNF37BP, ZNF33B, LINC00839) 0.482 1 NA 0.82190435344153 41 0.244441925368888 2 2 0 -5.76910478108117 LTS-031 chr10 43085514 45432386 2346873 * c(C10orf142, LINC00840, MIR5100, HNRNPA3P1, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF32, ZNF33B, ZNF239, BMS1) 0.441957039509026 40 0.0465965705241854 0.854270705151548 1100 0.36813039886695 2 1 1 -6.74193730653141 LTS-031 chr10 45432387 45432399 13 * TMEM72-AS1 NA 0 NA 1.119 1 NA NA NA NA NA LTS-031 chr10 45432400 45500752 68353 * c(C10orf10, C10orf25, TMEM72-AS1, ZNF22, RASSF4) 0.447969904919882 6 0.0469751707465409 1.19587181566729 251 0.462238544649148 4 2 2 -6.75777743533743 LTS-031 chr10 45500753 45611370 110618 * c(RSU1P2, ZNF22) NA 0 NA 0.738 1 NA NA NA NA NA LTS-031 chr10 45611371 47756145 2144775 * c(RSU1P2, MIR3156-1, AGAP4, MARCH8, ALOX5, NA, FAM21C, PTPN20, ANKRD30BP3, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, OR13A1, SYT15, ZFAND4, GPRIN2) 0.406366278013452 34 0.0899691767380549 0.797669955232862 730 0.334394795321705 1 1 0 -6.76743216990863 LTS-031 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.043 1 NA NA NA NA NA LTS-031 chr10 47903105 48370568 467464 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.366129166792822 50 0.263830359844181 0 NA NA -6.85083905055787 LTS-031 chr10 48370569 48370595 27 * c(ZNF488, PTPN20, GLUD1P7, NA, NA, NA) 0.485 1 NA 0.763 1 NA NA NA NA NA LTS-031 chr10 48370596 49440382 1069787 * c(ZNF488, FRMPD2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, RBP3, NA, NA, FRMPD2B) 0.453379966443881 10 0.0357971134776721 0.749162262455865 375 0.378987398508399 0 0 0 -6.92589483649989 LTS-031 chr10 49440383 49444518 4136 * c(FRMPD2, NA) NA 0 NA 1.257 1 NA NA NA NA NA LTS-031 chr10 49444519 49804449 359931 * c(FRMPD2, NA, MAPK8, ARHGAP22) 0.444933444467011 4 0.0705614389498022 1.07549431544741 339 0.471213509010502 4 2 2 -6.73836100156853 LTS-031 chr10 49804450 49804620 171 * c(NA, ARHGAP22) NA 0 NA 0.669 1 NA NA NA NA NA LTS-031 chr10 49804621 51051527 1246907 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, LRRC18, NA, OGDHL, WDFY4, ARHGAP22, DRGX, SLC18A3, PARG) 0.440604394572792 42 0.0589845793741796 0.771726459944508 1553 0.333662988765002 1 1 0 -6.82467703561317 LTS-031 chr10 51051528 51537226 485699 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.415491125725539 40 0.51265380368812 0 NA NA -5.97497684508941 LTS-031 chr10 51537227 59986974 8449748 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, NCOA4, PARG) 0.428207552226904 36 0.0599524348500079 0.76127652520893 1485 0.426131288648166 1 1 0 -6.7519685456105 LTS-031 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.327 1 NA NA NA NA NA LTS-031 chr10 59997544 65384347 5386804 * c(MIR1296, MRLN, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, IPMK, LINC01553, ANK3, NRBF2, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.44938024072954 70 0.048847165205918 0.976934514740601 2976 0.456341883836093 3 2 1 -6.84416101085145 LTS-031 chr10 65384348 71391299 6006952 * c(DNA2, STOX1, C10orf35, ATOH7, REEP3, SIRT1, TSPAN15, HERC4, KIF1BP, CTNNA3, ANXA2P3, HK1, HNRNPH3, LRRTM3, NEUROG3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.449406155908503 30 0.0308671793110528 0.847382253823118 2633 0.449594053536994 2 1 1 -6.82302857399304 LTS-031 chr10 71391300 81205247 9813948 * c(DLG5-AS1, ZNF503-AS2, LINC00856, MIR1256, MIR4676, PPIF, MICU1, POLR3A, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, USP54, FUT11, OIT3, EIF4EBP2, ZCCHC24, UNC5B, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, AP3M1, PALD1, GLUD1P3, ZMIZ1-AS1, ANXA7, FAM149B1, DUPD1, KCNMA1, C10orf105, C10orf55, LINC00595, DNAJC9-AS1, NODAL, P4HA1, PCBD1, ASCC1, MRPS16, NA NA NA NA NA NA NA NA NA LTS-031 DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, PSAP, SAR1A, ZMIZ1, MYOZ1, RPS24, CDH23, NPFFR1, C10orf54, UNC5B-AS1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, C10orf11, PLA2G12B, ZNF503, AIFM2, NDST2, SGPL1, MCU, DLG5, CHST3, SEC24C, SPOCK2) 0.431635710626749 154 0.0643794037130115 1.03069088418374 7731 0.486375777323978 3 2 1 -6.77747637531679 LTS-031 NA NA NA NA LTS-031 chr10 81205248 81904860 699613 * c(BMS1P21, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, MBL1P) 0.430137247981748 12 0.0629090252232973 0.627761134853367 415 0.401738024087429 0 0 0 -6.74661796990456 LTS-031 chr10 81904861 81904920 60 * character(0) NA 0 NA 0.854 1 NA NA NA NA NA LTS-031 chr10 81904921 82004373 99453 * c(ANXA11, LINC00857) 0.455977839116057 2 0.0332340187157677 1.00584933759828 190 0.399389334193259 4 2 2 -6.89482014790712 LTS-031 chr10 82004374 82006065 1692 * character(0) NA 0 NA 0.396611334418758 43 0.148168217233004 0 NA NA -5.77548760110309 LTS-031 chr10 82006066 82006141 76 * character(0) NA 0 NA 0.562 1 NA NA NA NA NA LTS-031 chr10 82006142 85974761 3968620 * c(NRG3, DYDC1, GHITM, SH2D4B, C10orf99, MAT1A, TSPAN14, FAM213A, DYDC2, CDHR1) 0.446672067020323 11 0.0420959941950862 0.827477892643751 817 0.375596918714248 2 1 1 -6.80663259119003 LTS-031 chr10 85974762 85994186 19425 * c(LRIT1, LRIT2, CDHR1) 0.455070436060474 12 0.036819276078015 0.574666112780812 181 0.218151687333173 0 0 0 -6.85272004257761 LTS-031 chr10 85994187 85996990 2804 * LRIT1 NA 0 NA 0.897 1 NA NA NA NA NA LTS-031 chr10 85996991 94100577 8103587 * c(KLLN, HECTD2-AS1, FAS-AS1, GRID1-AS1, MIR4679-1, MIR4679-2, MIR4678, LINC00502, RPP30, ADIRF, LDB3, ANKRD22, NUDT9P1, AGAP11, LIPJ, CFL1P1, HECTD2, FGFBP3, LINC00858, CPEB3, WAPL, IFIT5, LRIT1, ANKRD1, GLUD1, FLJ37201, GRID1, HTR7, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, LINC00863, IFIT1B, MIR346, PANK1, CCSER2, FAM35A, MARCH5, PPP1R3C, RNLS, PTEN, STAMBPL1, ACTA2, RGR, FAM25A, LIPK, NA NA NA NA NA NA NA NA NA LTS-031 LIPN, LINC00865, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, TNKS2, PCGF5, ATAD1, LIPF, CH25H, BTAF1, PAPSS2, OPN4, MINPP1, KIF20B) 0.435089162642691 72 0.0744567059191986 0.937002146708976 4636 0.503461624894392 3 2 1 -6.79257478462026 LTS-031 NA NA NA NA LTS-031 chr10 94100578 94109042 8465 * MARCH5 NA 0 NA 0.498 1 NA NA NA NA NA LTS-031 chr10 94109043 96480220 2371178 * c(PLCE1-AS1, MARK2P9, FRA10AC1, CYP2C19, CYP2C18, CYP26A1, SLC35G1, TBC1D12, MYOF, PIPSL, HELLS, HHEX, FFAR4, CYP26C1, IDE, KIF11, PLCE1, PDE6C, EXOC6, MARCH5, CEP55, RBP4, NOC3L, LGI1) 0.437633261443863 50 0.0505715254236361 0.832970878222505 2367 0.502273286286562 2 1 1 -6.74684196886104 LTS-031 chr10 96480221 96484088 3868 * c(CYP2C19, CYP2C18) NA 0 NA 0.53 1 NA NA NA NA NA LTS-031 chr10 96484089 96954470 470382 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18) 0.429629223869858 6 0.0681539923017476 0.543820377345192 211 0.251038482961839 0 0 0 -6.87682998399414 LTS-031 chr10 96954471 96961220 6750 * ACSM6 NA 0 NA 2.133 1 NA NA NA NA NA LTS-031 chr10 96961221 102753716 5792496 * c(C10orf131, DNMBP-AS1, FRAT1, MIR1287, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, SORBS1, ERLIN1, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, ABCC2, COX15, CPN1, ACSM6, NKX2-3, DNTT, RRP12, DNMBP, FRAT2, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, R3HCC1L, GOT1, BLOC1S2, BLNK, HPS1, CC2D2B, GOLGA7B, C10orf62, NDUFB8, PAX2, EXOSC1, CUTC, PGAM1, CCNJ, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, C10orf2, NA NA NA NA NA NA NA NA NA LTS-031 TM9SF3, ENTPD7, SEMA4G, ALDH18A1, AVPI1, HPSE2, SCD, MMS19, SFRP5, SLIT1, SNORA12, MIR608, TLL2, ENTPD1-AS1, WNT8B, UBTD1, SLC25A28, MARVELD1, LOXL4, ZDHHC16, LCOR, MRPL43, PYROXD2, ARHGAP19, OLMALINC, PKD2L1, PDLIM1, OPALIN, ENTPD1, ZNF518A) 0.440665102609474 185 0.0501881343039554 0.90096916975858 7106 0.415508706236852 2 1 1 -6.75130442007261 LTS-031 NA NA NA NA LTS-031 chr10 102753717 102753720 4 * C10orf2 0.448 1 NA 1.64 1 NA NA NA NA NA LTS-031 chr10 102753721 102795825 42105 * c(C10orf2, PDZD7, SFXN3, LZTS2) 0.436006281769488 5 0.0327062685123204 1.24901051056956 274 0.453979264565918 7 4 3 -6.73562988938611 LTS-031 chr10 102795826 102796203 378 * SFXN3 NA 0 NA 1.032 1 NA NA NA NA NA LTS-031 chr10 102796204 103371597 575394 * c(TLX1NB, MIR3158-1, MIR3158-2, LBX1, DPCD, POLL, TLX1, LBX1-AS1, FBXW4, KAZALD1, SFXN3, BTRC) 0.247439130233149 3 0.248829928532187 0.871952768587141 536 0.540729918381758 3 3 0 -6.8127577958887 LTS-031 chr10 103371598 103372122 525 * FBXW4 NA 0 NA 1.035 1 NA NA NA NA NA LTS-031 chr10 103372123 104865223 1493101 * c(KCNIP2-AS1, RPARP-AS1, BORCS7-ASMT, ACTR1A, NPM3, MGEA5, SFXN2, BORCS7, CYP17A1, FGF8, NT5C2, PPRC1, KCNIP2, ARL3, NFKB2, SUFU, PITX3, CNNM2, WBP1L, PSD, AS3MT, MIR146B, FBXW4, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, TRIM8, ELOVL3, GBF1, LDB1, NOLC1) 0.436186712401043 54 0.0772870081012578 1.05247707085744 2660 0.492142435831475 4 2 2 -6.74156564948429 LTS-031 chr10 104865224 105158321 293098 * c(MIR1307, NT5C2, PDCD11, TAF5, RPEL1, PCGF6, USMG5, INA) NA 0 NA 0.684426269436244 299 0.369710591339451 0 NA NA -5.76838296152097 LTS-031 chr10 105158322 105160074 1753 * PDCD11 NA 0 NA 1.737 1 NA NA NA NA NA LTS-031 chr10 105160075 105799695 639621 * c(SH3PXD2A-AS1, CALHM3, COL17A1, PDCD11, CALHM1, CALHM2, OBFC1, NEURL1, SH3PXD2A, SLK) 0.450193570000303 21 0.032231159132858 1.08442952814405 1079 0.453817831605121 4 2 2 -6.80939448951657 LTS-031 chr10 105799696 111625055 5825360 * c(MIR936, MIR4482, SORCS1, GSTO2, SFR1, COL17A1, CFAP58, SORCS3, MIR609, XPNPEP1, CFAP43, ITPRIP, GSTO1) 0.436897225960624 27 0.048362678978203 0.808328095692444 1158 0.362237297746888 2 1 1 -6.89614854172071 LTS-031 chr10 111625056 111628335 3280 * XPNPEP1 NA 0 NA 1.439 1 NA NA NA NA NA LTS-031 chr10 111628336 112760280 1131945 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.446274752873378 10 0.0359901221016113 1.02718064886814 955 0.568112908894018 4 2 2 -6.77025181833283 LTS-031 chr10 112760281 112764373 4093 * SHOC2 NA 0 NA 0.748 1 NA NA NA NA NA LTS-031 chr10 112764374 114194097 1429724 * c(ADRA2A, GUCY2GP, ACSL5, GPAM, ZDHHC6, TECTB, SHOC2) 0.297118341880203 8 0.187211683090865 0.798099287475539 604 0.390570041322662 2 2 0 -6.8675395516309 LTS-031 chr10 114194098 114194188 91 * ZDHHC6 NA 0 NA 1.016 1 NA NA NA NA NA LTS-031 chr10 114194189 114927065 732877 * c(MIR4295, VTI1A, ZDHHC6, TCF7L2) 0.410698444777702 3 0.00472581562625258 1.23867615278399 318 0.715176582810511 6 4 2 -6.79106724829338 LTS-031 chr10 114927066 116013489 1086424 * c(MIR2110, MIR4483, ADRB1, HABP2, VWA2, NHLRC2, NRAP, CCDC186, TDRD1, TCF7L2, PLEKHS1, CASP7, DCLRE1A) 0.447941406842727 31 0.0342358360949208 0.823493069048593 1264 0.37830386954272 2 1 1 -6.79345720692589 LTS-031 chr10 116013490 116014606 1117 * VWA2 NA 0 NA 1.306 1 NA NA NA NA NA LTS-031 chr10 116014607 116590706 576100 * c(VWA2, ABLIM1, FAM160B1, AFAP1L2) 0.437197287196719 18 0.0624756161584589 1.10323952344327 531 0.501121385822551 4 2 2 -6.73335941138599 LTS-031 chr10 116590707 116592999 2293 * FAM160B1 NA 0 NA 0.481 1 NA NA NA NA NA LTS-031 chr10 116593000 118368750 1775751 * c(PNLIPRP3, TRUB1, ATRNL1, GFRA1, CCDC172, PNLIP, PNLIPRP1, FAM160B1) 0.433120964763802 25 0.040527686010101 0.810502839341148 840 0.331874399421829 2 1 1 -6.80021926261986 LTS-031 chr10 118368751 118380330 11580 * character(0) NA 0 NA 1.309 1 NA NA NA NA NA LTS-031 chr10 118380331 124274439 5894109 * c(MIR3941, MIR3663, MIR4682, MIR4681, TACC2, PRDX3, VAX1, ATE1, SEC23IP, BTBD16, PDZD8, SFXN4, C10orf82, CACUL1, EMX2OS, PLPP4, EMX2, FGFR2, RAB11FIP2, INPP5F, CASC2, HSPA12A, WDR11-AS1, PRLHR, GRK5, KCNK18, NANOS1, ENO4, ARMS2, PNLIPRP2, NSMCE4A, WDR11, HTRA1, SHTN1, PLEKHA1, RGS10, FAM204A, SNORA19, SLC18A2, TIAL1, MCMBP, EIF3A, BAG3) 0.425421348626003 57 0.0758884346345225 0.956719458257321 3830 0.538163250928489 3 2 1 -6.74705238177105 LTS-031 chr10 124274440 124320138 45699 * character(0) NA 0 NA 0.493 1 NA NA NA NA NA LTS-031 chr10 124320139 124605268 285130 * c(FAM24B-CUZD1, DMBT1, DMBT1P1, C10orf120, CUZD1) 0.420160365727052 14 0.0696465566782943 0.622743931408253 274 0.263228347289007 0 0 0 -6.77900992809847 LTS-031 chr10 124605269 125526621 921353 * c(FAM24B-CUZD1, FAM24A, PSTK, CPXM2, FAM24B, GPR26, HMX2, HMX3, ACADSB, LOC399815, IKZF5, C10orf88, BUB3) 0.450277003021183 16 0.0440302452866209 0.875649362780927 835 0.41281785165739 2 1 1 -6.77451230643468 LTS-031 chr10 125526622 125528036 1415 * CPXM2 NA 0 NA 1.596 1 NA NA NA NA NA LTS-031 chr10 125528037 128114721 2586685 * c(TEX36-AS1, MIR4296, MIR4484, LINC00601, FANK1-AS1, C10orf90, MMP21, CPXM2, CTBP2, FAM175B, EDRF1, LOC283038, TEX36, NKX1-2, METTL10, FLJ37035, OAT, CHST15, ZRANB1, DHX32, BCCIP, LHPP, UROS, ADAM12, FANK1, FAM53B) 0.360465554195904 38 0.0874708974158654 1.08934831907988 1763 0.515087989686139 5 4 1 -6.8032144578263 LTS-031 chr10 128114722 128118246 3525 * C10orf90 NA 0 NA 0.492 1 NA NA NA NA NA LTS-031 chr10 128118247 129883110 1764864 * c(C10orf90, CLRN3, DOCK1, FOXI2, PTPRE, NPS, FAM196A) 0.43956293724486 42 0.0454483408287725 0.869364610376803 810 0.347101974203055 2 1 1 -6.73361945459705 LTS-031 chr10 129883111 129883117 7 * PTPRE NA 0 NA 0.433 1 NA NA NA NA NA LTS-031 chr10 129883118 129917701 34584 * c(MKI67, PTPRE) 0.43233366009798 7 0.0492877846356043 0.635390229480485 285 0.194894940875205 0 0 0 -6.7432409978296 LTS-031 chr10 129917702 129921172 3471 * MKI67 NA 0 NA 1.06 1 NA NA NA NA NA LTS-031 chr10 129921173 134693137 4771965 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.428531392047783 61 0.059302443300599 1.10996164861012 1394 0.530441705885581 4 2 2 -6.75096142696348 LTS-031 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.641 1 NA NA NA NA NA LTS-031 chr10 134694406 134756359 61954 * CFAP46 0.401316178276067 9 0.0578419782203587 0.562554950902891 180 0.217337927300043 1 1 0 -6.85095129584258 LTS-031 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 2.1 1 NA NA NA NA NA LTS-031 chr10 134884462 135044425 159964 * c(UTF1, ADGRA1, KNDC1) 0.421741071367179 23 0.0496299746861892 0.90842715413974 406 0.367919385606651 3 2 1 -6.74880533429787 LTS-031 chr10 135044426 135044734 309 * UTF1 NA 0 NA 1.273 1 NA NA NA NA NA LTS-031 chr10 135044735 135279049 234315 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, MTG1) 0.397504924104614 3 0.0248461935381123 1.19394130920176 816 0.558717710122235 4 3 1 -6.74654884465275 LTS-031 chr10 135279050 135279265 216 * SCART1 NA 0 NA 0.939 1 NA NA NA NA NA LTS-031 chr10 135279266 135473026 193761 * c(CYP2E1, SPRNP1, FRG2B, SCART1, SYCE1) 0.329733067205576 7 0.027299049346783 0.851545468682875 233 0.363577031258472 3 3 0 -6.75735132839024 LTS-031 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.443 1 NA NA NA NA NA LTS-031 chr11 193025 193096 72 * SCGB1C1 0.285 1 NA 0.934989841391343 3 0.280316487801437 3 3 0 -5.76441182152545 LTS-031 chr11 193097 1018496 825400 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.369265062067156 140 0.085295767086278 0.879914530161926 3126 0.465725339150731 2 2 0 -6.73310674095043 LTS-031 chr11 1018497 1018580 84 * MUC6 NA 0 NA 0.468 1 NA NA NA NA NA LTS-031 chr11 1018581 1267423 248843 * c(MUC2, MUC6, MUC5B) 0.344806729843045 105 0.0751122724982641 0.620877400714072 871 0.293943692985804 2 2 0 -6.9918292978959 LTS-031 chr11 1267424 4133360 2865937 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, TOLLIP-AS1, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, CHRNA10, MRPL23, MIR483, NA NA NA NA NA NA NA NA NA LTS-031 RRM1, TSSC2, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.410205624202511 136 0.0703396057048869 0.824895619741776 3414 0.479182161147544 1 1 0 -6.78759179149758 LTS-031 NA NA NA NA LTS-031 chr11 4133361 4965429 832069 * c(LOC100506082, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, OR52K1, OR52I1, OR51D1, OR51T1, TRIM68, RRM1, TRIM21, OR51G1, OR51G2, OR51E2) 0.370462266132235 33 0.0785370617973296 0.612305894626166 838 0.312865005395273 0 0 0 -7.1707908365297 LTS-031 chr11 4965430 4967266 1837 * character(0) NA 0 NA 0.298 1 NA NA NA NA NA LTS-031 chr11 4967267 4976978 9712 * c(OR51A4, OR51A2) 0.37057328546162 3 0.0847899365097848 0.265461496645064 52 0.168465163497434 2 2 0 -7.01187310641013 LTS-031 chr11 4976979 5009215 32237 * character(0) NA 0 NA 0.89 1 NA NA NA NA NA LTS-031 chr11 5009216 5529889 520674 * c(OR52E2, OR52J3, OR51L1, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, MMP26, OR51B4, OR51B2) 0.365114348841894 29 0.0664577905969984 0.510137991756988 682 0.375335247770781 2 2 0 -7.31962830680102 LTS-031 chr11 5529890 5529894 5 * c(HBG2, UBQLN3) NA 0 NA 0.719 1 NA NA NA NA NA LTS-031 chr11 5529895 5732092 202198 * c(TRIM22, TRIM6, UBQLNL, HBG2, OR52B6, OR52H1, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM5) 0.372807742278864 16 0.131031786855964 0.739816151394681 475 0.491416176088306 2 2 0 -6.74760403313806 LTS-031 chr11 5732093 5755335 23243 * c(TRIM22, TRIM5) NA 0 NA 0.486 1 NA NA NA NA NA LTS-031 chr11 5755336 6221527 466192 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR56B1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.34953501678476 12 0.0615833999671596 0.489288056174489 469 0.202653220197925 0 0 0 -8.27518733246109 LTS-031 chr11 6221528 6226713 5186 * character(0) NA 0 NA 1.059 1 NA NA NA NA NA LTS-031 chr11 6226714 6565881 339168 * c(TRIM3, PRKCDBP, CNGA4, DNHD1, C11orf42, ARFIP2, TIMM10B, APBB1, HPX, SMPD1, FAM160A2, CCKBR) 0.402660787728618 28 0.0535535137594055 0.859353129472633 936 0.338800970139311 1 1 0 -6.80498019071217 LTS-031 chr11 6565882 6593282 27401 * DNHD1 0.449499158425661 2 0.0487903679018718 0.582204215962164 291 0.179777984501274 0 0 0 -6.7679657902889 LTS-031 chr11 6593283 6616211 22929 * character(0) NA 0 NA 4.009 1 NA NA NA NA NA LTS-031 chr11 6616212 6735905 119694 * c(TPP1, RRP8, ILK, GVINP1, MRPL17, TAF10, DCHS1) 0.294949256179527 7 0.2388687625335 0.988236823455645 699 0.522850828393567 4 4 0 -6.73618396398065 LTS-031 chr11 6735906 6978554 242649 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, OR2AG2, OR10A2, GVINP1, ZNF215, OR6A2) 0.397457076649425 14 0.0452527092261634 0.456588218171781 382 0.213317068974826 0 0 0 -7.5610649976076 LTS-031 chr11 6978555 7531534 552980 * c(SYT9, RBMXL2, OLFML1, NLRP14, ZNF214, ZNF215) 0.417162171009337 11 0.0464889038569225 0.615182105030204 377 0.254087044946223 0 0 0 -6.87259418690931 LTS-031 chr11 7531535 7723412 191878 * c(OLFML1, OVCH2, CYB5R2, PPFIBP2) 0.368267506272606 17 0.0690089508260896 0.928770315609044 330 0.450016930530013 2 2 0 -6.73514740233347 LTS-031 chr11 7723413 7723637 225 * OVCH2 NA 0 NA 0.385 1 NA NA NA NA NA LTS-031 chr11 7723638 7982788 259151 * c(OR5P2, OR5P3, OR5E1P, OR10A3, LOC283299, NLRP10, OVCH2, OR10A6) 0.393016905584744 27 0.0899435878917947 0.517493410814175 229 0.257177832265973 0 0 0 -6.99969974109417 LTS-031 chr11 7982789 8711235 728447 * c(NLRP10, LMO1, RPL27A, SNORA3A, STK33, SNORA3B, TUB, RIC3, EIF3F, TRIM66) 0.407025338053891 25 0.0564385506546722 0.824088049525169 1033 0.398482739549537 1 1 0 -6.77110151889677 LTS-031 chr11 8711236 8752841 41606 * c(RPL27A, ST5) 0.384758234651244 4 0.0548475158963467 1.24078308425674 171 0.502467971654612 7 5 2 -6.73913583691152 LTS-031 chr11 8752842 8772078 19237 * ST5 NA 0 NA 0.692 1 NA NA NA NA NA LTS-031 chr11 8772079 12965906 4193828 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, GALNT18, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, LOC644656, ST5, SNORA23, SNORD97, TEAD1, ZBED5-AS1, WEE1, ZNF143, SBF2, MICALCL, MICAL2, CTR9) 0.416201034606443 73 0.056959767771618 0.898685947863311 3455 0.717677322288187 3 2 1 -6.80443991520888 LTS-031 chr11 12965907 14793607 1827701 * c(LINC00958, SPON1, COPB1, RRAS2, ARNTL, PDE3B, PSMA1, PTH, RASSF10, TEAD1, FAR1, BTBD10) 0.412088165335498 12 0.0590654490605741 0.714115756336288 787 0.335649173815936 1 1 0 -6.77748780073467 LTS-031 chr11 14793608 14807977 14370 * PDE3B NA 0 NA 0.365 1 NA NA NA NA NA LTS-031 chr11 14807978 15099071 291094 * c(CYP2R1, PDE3B, CALCA, CALCB) 0.292 1 NA 0.516311821778529 180 0.257576630434992 0 0 0 -5.89626456311961 LTS-031 chr11 15099072 15133901 34830 * CALCB NA 0 NA 1.131 1 NA NA NA NA NA LTS-031 chr11 15133902 17073670 1939769 * c(OR7E14P, C11orf58, PLEKHA7, INSC, SOX6) 0.358545087807263 6 0.0798316979651567 0.93780741917493 627 0.372172881794422 2 2 0 -6.78375809593158 LTS-031 chr11 17073671 17095872 22202 * OR7E14P NA 0 NA 0.564 1 NA NA NA NA NA LTS-031 chr11 17095873 18656035 1560163 * c(SPTY2D1-AS1, SAA2-SAA4, USH1C, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, LDHAL6A, SERGEF, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, LDHA, LDHC, MYOD1, NUCB2, LOC494141, PIK3C2A, UEVLD, RPS13, SAA1, SAA2, SAA3P, SAA4, ABCC8, TPH1, TSG101) 0.378976034505305 70 0.10324965121583 0.70722632891449 2830 0.438524425595643 1 1 0 -6.84175615881101 LTS-031 chr11 18656036 18770945 114910 * c(TMEM86A, IGSF22, PTPN5) 0.333131154271584 7 0.159935403627006 0.976788722773564 311 0.537641086478252 3 3 0 -6.73386380439648 LTS-031 chr11 18770946 19372602 601657 * c(MRGPRX2, MRGPRX1, ZDHHC13, E2F8, CSRP3, PTPN5, NAV2) 0.406753166448187 6 0.0597977145605638 0.587721375370463 321 0.41045921791057 1 1 0 -6.89244502412038 LTS-031 chr11 19372603 19596746 224144 * c(NAV2-AS5, NAV2-AS4, NAV2) NA 0 NA 1.709 1 NA NA NA NA NA LTS-031 chr11 19596747 20473856 877110 * c(LOC100126784, MIR4486, MIR4694, PRMT3, HTATIP2, DBX1, NAV2) 0.372761350778598 12 0.0403289504255224 0.980314525694188 543 0.380602059337549 2 2 0 -6.78462514550601 LTS-031 chr11 20473857 20483526 9670 * PRMT3 NA 0 NA 0.529 1 NA NA NA NA NA LTS-031 chr11 20483527 22880918 2397392 * c(CCDC179, PRMT3, ANO5, FANCF, SVIP, GAS2, NELL1, SLC17A6, SLC6A5) 0.396487837740359 18 0.0595938596214003 0.680088667855633 882 0.268533780727809 1 1 0 -7.04985416316308 LTS-031 chr11 22880919 22881002 84 * CCDC179 0.448 1 NA 1.059 1 NA NA NA NA NA LTS-031 chr11 22881003 26682426 3801424 * c(CCDC179, MUC15, LUZP2, ANO3) 0.438553054213882 16 0.0440528092180283 0.671294855676948 398 0.274400789214937 0 0 0 -6.77250431312927 LTS-031 chr11 26682427 32126928 5444502 * c(DCDC5, LINC00678, DNAJC24, ARL14EP, SLC5A12, METTL15, IMMP1L, FSHB, ELP4, DCDC1, KCNA4, FIBIN, DKFZp686K1684, BDNF-AS, PAX6, LIN7C, LGR4, RCN1, BDNF, ANO3, MIR610, MPPED2, KIF18A, BBOX1, CCDC34) 0.429432549832756 63 0.105403542682568 0.901445386397304 2222 0.521696270648862 2 1 1 -6.74833612631554 LTS-031 chr11 32126929 32127046 118 * RCN1 NA 0 NA 1.372 1 NA NA NA NA NA LTS-031 chr11 32127047 32627728 500682 * c(EIF3M, CCDC73, WT1-AS, RCN1, WT1) 0.370934307960581 15 0.189943976702906 1.27180815163004 253 0.603268673282373 5 4 1 -6.73700313462785 LTS-031 chr11 32627729 35547491 2919763 * c(C11orf91, MIR1343, HIPK3, CSTF3, ELF5, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, CCDC73, APIP, NAT10, TCP11L1, SLC1A2, PRRG4, QSER1, PDHX, CAT, DEPDC7, CD44, CD59) 0.435396853960405 100 0.0600243814098601 0.869222594492966 3070 0.435646776837988 2 1 1 -6.73519224138742 LTS-031 chr11 35547492 35547588 97 * PAMR1 NA 0 NA 1.054 1 NA NA NA NA NA LTS-031 chr11 35547589 36516644 969056 * c(MIR3973, LDLRAD3, FJX1, PAMR1, COMMD9, TRIM44, TRAF6, PRR5L) 0.457213620229017 23 0.0334721286925329 1.15170165804832 555 1.07639150243931 4 2 2 -6.91290108978544 LTS-031 chr11 36516645 43380452 6863808 * c(LOC100507205, C11orf74, HNRNPKP3, TTC17, LRRC4C, RAG1, RAG2, TRAF6, API5) 0.282373988680349 3 0.243283784909722 0.711611126288208 449 0.436611533305468 1 1 0 -7.00904620870767 LTS-031 chr11 43380453 47802074 4421622 * c(MIR670, MIR3160-2, MIR3160-1, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CELF1, CHRM4, C1QTNF4, PTPMT1, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, NUP160, FNBP4, MTCH2, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, FAM180B, LRP4, MIR129-2, MDK, MYBPC3, NDUFS3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, KBTBD4, TTC17, PRDM11, PSMC3, SYT13, RAPSN, ALX4, NA NA NA NA NA NA NA NA NA LTS-031 SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, AGBL2, ARFGAP2, ACCS, DGKZ, CHST1, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.439098356882551 89 0.0510363511820899 0.997647299312467 5220 0.432483939855103 3 2 1 -6.76056584022972 LTS-031 NA NA NA NA LTS-031 chr11 47802075 47804578 2504 * NUP160 NA 0 NA 0.625 1 NA NA NA NA NA LTS-031 chr11 47804579 51527695 3723117 * c(OR4C46, OR4X2, OR4B1, NUP160, FOLH1, OR4C3, OR4S1, OR4C13, OR4C12, TRIM49B, OR4X1, OR4A47, OR4C45, LOC440040, LOC441601, PTPRJ, TRIM64C, LOC646813, OR4A5) 0.395987377068058 149 0.061127493567123 0.70247479605386 1173 0.422448439137912 1 1 0 -6.88620747008401 LTS-031 chr11 51527696 51527703 8 * character(0) NA 0 NA 0.682 1 NA NA NA NA NA LTS-031 chr11 55035776 55110727 74952 * c(TRIM51HP, TRIM48, OR4A16) 0.321 1 NA 0.456110074419688 5 0.240924884559483 0 0 0 -5.85798405397005 LTS-031 chr11 55110728 55111701 974 * OR4A16 0.268787283141068 13 0.0269562798924671 0.723342584875516 29 0.439703418293642 16 13 3 -6.73800741363431 LTS-031 chr11 55111702 55136219 24518 * OR4A15 0.483 1 NA 0.543549574336701 15 0.181242457971162 0 0 0 -5.77807339330577 LTS-031 chr11 55136220 56467848 1331629 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR8J3, OR4P4, OR4C15, OR4A15, TRIM51) 0.416516663054907 127 0.0656562413807398 0.544042051257586 1093 0.244333523849281 0 0 0 -7.18073990253101 LTS-031 chr11 56467849 56467881 33 * c(OR8U8, OR9G9) 0.447 1 NA 1.483 1 NA NA NA NA NA LTS-031 chr11 56467882 57068381 600500 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, OR8U8, OR9G9, TNKS1BP1) 0.37012465278448 38 0.0849406327696341 0.734145382445332 310 0.328661778317115 2 2 0 -6.83400934902783 LTS-031 chr11 57068382 57099294 30913 * c(SSRP1, TNKS1BP1) 0.44440889529428 12 0.0621232279791179 1.39841839319272 203 0.515531272809799 6 3 3 -6.73834022826396 LTS-031 chr11 57099295 57099647 353 * SSRP1 NA 0 NA 0.703 1 NA NA NA NA NA LTS-031 chr11 57099648 57596665 497018 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, UBE2L6) 0.422624432618244 15 0.0514945212064906 0.99660574033625 1243 0.52153129319733 3 2 1 -6.74057695942944 LTS-031 chr11 57596666 57798344 201679 * OR9Q1 NA 0 NA 0.418 1 NA NA NA NA NA LTS-031 chr11 57798345 58274644 476300 * c(OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B2, OR5B12, OR5B3, OR10W1) 0.440491830829378 18 0.0540085021145152 0.566702853210552 344 0.26817264462767 0 0 0 -6.80332917144898 LTS-031 chr11 58274645 58393231 118587 * c(CNTF, OR5B21, ZFP91-CNTF, ZFP91, LPXN) NA 0 NA 1.15226801602925 285 0.46328095014738 4 NA NA -5.76505996833214 LTS-031 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.676 1 NA NA NA NA NA LTS-031 chr11 58476545 58920928 444384 * c(GLYAT, GLYATL2, LOC283194, FAM111B, FAM111A, GLYATL1) 0.423666844460887 7 0.063670281622628 0.69924166164668 286 0.353789408549446 1 1 0 -6.75387521979461 LTS-031 chr11 58920929 58921041 113 * FAM111A NA 0 NA 1.032 1 NA NA NA NA NA LTS-031 chr11 58921042 58980455 59414 * c(MPEG1, DTX4, FAM111A) 0.235559288799382 2 0.313248304065641 1.09275159324156 245 0.491439176230819 6 6 0 -6.73909499907282 LTS-031 chr11 58980456 59056111 75656 * MPEG1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-031 chr11 59056112 59283027 226916 * c(OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) 0.298 1 NA 0.56923923344957 154 0.158426362039649 0 0 0 -5.85293114375039 LTS-031 chr11 59283028 59283200 173 * OR4D9 NA 0 NA 0.994 1 NA NA NA NA NA LTS-031 chr11 59283201 59596788 313588 * c(MIR3162, PATL1, GIF, OR4D9, OR10V1, OSBP, MRPL16, STX3, OR10V2P) 0.365 1 NA 1.04602380173418 439 0.482004946083556 4 4 0 -5.76663799842035 LTS-031 chr11 59596789 60658468 1061680 * c(PTGDR2, OOSP2, MS4A15, MS4A2, ZP1, MS4A6E, GIF, PRPF19, LINC00301, MS4A10, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, CCDC86, MS4A8, MS4A14, MS4A1, MS4A3) 0.416455857308522 40 0.0772994676068839 0.714643669887826 1210 0.358798010455946 1 1 0 -6.7527556113726 LTS-031 chr11 60658469 61920065 1261597 * c(MIR1908, MIR4488, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, FTH1, TKFC, DKFZP434K028, PRPF19, INCENP, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CPSF7, SYT7, CD5, CD6, FADS2) 0.449057448994611 38 0.0363213196976703 1.03653029992054 2938 0.490175348055277 4 2 2 -6.79372176767778 LTS-031 chr11 61920066 62300063 379998 * c(SCGB1D2, SCGB1D1, INCENP, SCGB1D4, SCGB2A1, SCGB2A2, SCGB1A1, AHNAK, ASRGL1) 0.407198721259378 8 0.162187501720341 0.808500092758694 495 0.381295182731528 1 1 0 -6.74117289694238 LTS-031 chr11 62300064 62300069 6 * AHNAK NA 0 NA 1.21 1 NA NA NA NA NA LTS-031 chr11 62300070 62676371 376302 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, WDR74, ROM1, TUT1, SLC3A2, STX5, SNORA57, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22) 0.450273231715166 35 0.0694158701249944 1.12475699857747 1889 0.535489591838998 4 2 2 -6.75009514888536 LTS-031 chr11 62676372 63312799 636428 * c(CHRM1, SLC22A9, HRASLS5, SLC22A24, SLC22A25, SLC22A10, RARRES3, LGALS12, SLC22A6, SLC22A8) 0.391569852465153 14 0.0750132589012703 0.689825440667726 726 0.309892775028427 1 1 0 -6.84234856456425 LTS-031 chr11 63312800 65180189 1867390 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, RTN3, CDC42EP2, EHD1, STIP1, PLA2G16, CDCA5, BATF2, SLC22A12, COX8A, C11orf84, GPHA2, MARK2, ESRRA, FAU, TIGD3, FKBP2, ATG2A, POLA2, FLRT1, PRDX5, TEX40, ATL3, PPP1R14B, MAJIN, SLC25A45, CCDC88B, RCOR2, MACROD1, SAC3D1, DNAJC4, SPDYC, ARL2, MIR192, MIR194-2, MEN1, SLC22A20, KCNK4, TRMT112, PLCB3, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, NA NA NA NA NA NA NA NA NA LTS-031 GPR137, BAD, PYGM, MAP4K2, RARRES3, DPF2, C11orf95, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, NAA40, CAPN1, FERMT3, TRPT1, FRMD8, NUDT22, SYVN1, RPS6KA4, NRXN2) 0.450605899110459 59 0.0673704354286225 1.05166540555546 5401 0.503951747062772 4 2 2 -6.76159867804738 LTS-031 NA NA NA NA LTS-031 chr11 65180190 65482067 301878 * c(MIR4489, MIR4690, KCNK7, KAT5, SSSCA1, FAM89B, SSSCA1-AS1, EHBP1L1, NEAT1, MALAT1, PCNX3, LTBP3, MAP3K11, SCYL1, RELA, SIPA1, FRMD8) 0.446946454283274 17 0.0368901389661408 1.25872216208142 1313 0.508850136919155 6 3 3 -6.76526473496395 LTS-031 chr11 65482068 65618969 136902 * c(KAT5, SNX32, OVOL1, RNASEH2C, AP5B1) 0.446845284909457 5 0.0312777876455481 0.848316412085492 292 0.326058966005713 2 1 1 -6.77457804518556 LTS-031 chr11 65618970 65619086 117 * SNX32 NA 0 NA 1.257 1 NA NA NA NA NA LTS-031 chr11 65619087 66999419 1380333 * c(RBM14-RBM4, DPP3, RBM14, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, KDM2A, PELI3, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, TMEM151A, BRMS1, NPAS4, RHOD, EFEMP2, SLC29A2, PC, CCDC87, PACS1, CD248, BBS1, RBM4, KLC2, MRPL11, SPTBN2, LRFN4, C11orf80, MUS81, FOSL1, RAB1B, C11orf68, RBM4B, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, FIBP, SYT12, RIN1, CCS, RCE1) 0.454513999914538 71 0.0444839853171699 1.07742227690723 3792 0.481216139959877 4 2 2 -6.81016290043453 LTS-031 chr11 66999420 67007450 8031 * KDM2A NA 0 NA 1.398 1 NA NA NA NA NA LTS-031 chr11 67007451 67810544 803094 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.442911621918315 38 0.0553273460459079 1.25092790016076 1747 0.559702677216827 6 3 3 -6.74232053773554 LTS-031 chr11 67810545 67810835 291 * TCIRG1 NA 0 NA 0.649 1 NA NA NA NA NA LTS-031 chr11 67810836 82641317 14830482 * c(KCNE3, MIR708, LOC100129216, LOC100133315, KCTD21-AS1, MIR548K, MIR4300, MIR3165, MIR3664, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, MIR5579, SHANK2-AS1, TCIRG1, POLD3, STARD10, NEU3, CHKA, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, CLNS1A, CPT1A, XRRA1, DHCR7, B3GNT6, CTTN, MRPL21, TPCN2, GDPD4, DDIAS, ORAOV1, SHANK2-AS3, LRTOMT, FAM181B, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, NA NA NA NA NA NA NA NA NA LTS-031 RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, OR2AT4, IGHMBP2, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, PAK1, GAL, KMT5B, COA4, PDE2A, PPME1, MRPL48, RSF1, C11orf24, LAMTOR1, ANO1, NADSYN1, FAM86C1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 PPP6R3, RNF121, ACER3, PRCP, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, RAB6A, CCND1, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, INTS4, TESMIN, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.418942666472213 217 0.0647405973050099 1.12774178127471 11756 0.555677027520506 4 2 2 -6.80306643953101 LTS-031 NA NA NA NA LTS-031 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.3 1 NA NA NA NA NA LTS-031 chr11 82642812 82668550 25739 * DDIAS 0.38966663264959 2 0.0466690475583121 0.425455050959458 67 0.273808124770635 4 3 1 -6.9197893058839 LTS-031 chr11 82668551 82668624 74 * DDIAS NA 0 NA 0.872 1 NA NA NA NA NA LTS-031 chr11 82668625 86152500 3483876 * c(SNORA70E, RAB30-AS1, ME3, DLG2, DDIAS, CCDC83, CCDC89, RAB30, ANKRD42, HIKESHI, PCF11, SYTL2, TMEM126B, CREBZF, CCDC90B, CCDC81, PICALM, TMEM126A, EED) 0.429730011822103 40 0.0491378946670255 1.0079822752399 2057 0.556734513508698 3 2 1 -6.73601943901892 LTS-031 chr11 86152501 86153772 1272 * ME3 NA 0 NA 1.874 1 NA NA NA NA NA LTS-031 chr11 86153773 86662038 508266 * c(ME3, PRSS23, FZD4, OR7E2P) 0.434149293516233 4 0.0307286511256189 1.40291693598823 299 0.584034465869154 7 4 3 -6.73541950659068 LTS-031 chr11 86662039 86662147 109 * c(PRSS23, FZD4) NA 0 NA 0.577 1 NA NA NA NA NA LTS-031 chr11 86662148 88241831 1579684 * c(LOC100506368, GRM5-AS1, CTSC, PRSS23, RAB38, GRM5, TMEM135, FZD4) 0.411949480628562 12 0.0820181059094253 1.01083755027126 382 0.597889200243277 3 2 1 -6.75830991963665 LTS-031 chr11 88241832 89774341 1532510 * c(GRM5-AS1, TRIM64, FOLH1B, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, TYR) 0.388896484250753 8 0.0913404150886749 0.752105497764441 533 0.56510237396634 1 1 0 -6.79187033390263 LTS-031 chr11 89774342 89774415 74 * TRIM49C NA 0 NA 0.925 1 NA NA NA NA NA LTS-031 chr11 89774416 94501654 4727239 * c(NAALAD2, MIR1304, MIR4490, GPR83, SLC36A4, FAT3, PIWIL4, AMOTL1, DEUP1, PANX1, FUT4, CHORDC1, C11orf54, HEPHL1, VSTM5, IZUMO1R, MRE11A, MTNR1B, ANKRD49, SMCO4, SCARNA9, TRIM49C, UBTFL1, C11orf97, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.412961658587209 64 0.0756099994961614 0.964363764847549 2535 0.474718129569534 3 2 1 -6.7656250359118 LTS-031 chr11 94501655 94705392 203738 * c(AMOTL1, CWC15) NA 0 NA 1.32156419755985 247 0.444566203112284 6 NA NA -5.76443420185835 LTS-031 chr11 94705393 94730188 24796 * c(CWC15, KDM4D) NA 0 NA 0.472 1 NA NA NA NA NA LTS-031 chr11 94730189 94823349 93161 * c(ENDOD1, KDM4E, KDM4D) 0.375888851894324 4 0.0834266144584569 0.738349372640487 139 0.29839269983632 2 2 0 -6.75501708404288 LTS-031 chr11 94823350 94861586 38237 * ENDOD1 NA 0 NA 1.201 1 NA NA NA NA NA LTS-031 chr11 94861587 102209662 7348076 * c(MIR1260B, MIR3920, JRKL-AS1, LOC101054525, YAP1, FAM76B, SESN3, ARHGAP42, ENDOD1, ANGPTL5, BIRC3, PGR, CNTN5, CEP126, TRPC6, CCDC82, TMEM133, MAML2, C11orf70, JRKL, MTMR2, CEP57) 0.425675826013366 77 0.0645436077927445 1.08876357511991 2453 0.54647509259863 4 2 2 -6.75948669639439 LTS-031 chr11 102209663 102209737 75 * BIRC3 0.456 1 NA 0.517 1 NA NA NA NA NA LTS-031 chr11 102209738 102933168 723431 * c(WTAPP1, TMEM123, BIRC2, BIRC3, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MMP27, DCUN1D5, MMP20) 0.403805040243174 25 0.0636087520183609 0.778388532176234 851 0.38514767241847 1 1 0 -6.76233961480476 LTS-031 chr11 102933169 111411544 8478376 * c(LOC100132078, CASP12, MIR4491, MIR4693, CARD16, COLCA2, KBTBD3, CWF19L2, KDELC2, LAYN, C11orf65, DDX10, FDX1, EXPH5, GRIA4, GUCY1A2, C11orf53, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, CARD17, ATM, NPAT, POU2AF1, SLC35F2, RAB39A, BTG4, ELMOD1, ARHGAP20, CARD18, RDX, AASDHPPT, LOC643733, LOC643923, SLN, DYNC2H1, PDGFD, CUL5, CASP1, CASP4, CASP5, DCUN1D5, MSANTD4, ZC3H12C, ALKBH8) 0.414109247399797 81 0.0733850343844366 0.97220853066011 4561 0.520793419488469 3 2 1 -6.76087730275797 LTS-031 chr11 111411545 112024378 612834 * c(HSPB2-C11orf52, PIH1D2, CRYAB, LAYN, DLAT, SIK2, TIMM8B, HSPB2, IL18, PPP2R1B, C11orf57, SDHD, C11orf1, ALG9, DIXDC1, FDXACB1) 0.397217608258635 4 0.0755093813156131 1.17289000512972 1300 0.496402083048326 4 3 1 -6.73972666395527 LTS-031 chr11 112024379 112024476 98 * IL18 NA 0 NA 1.05 1 NA NA NA NA NA LTS-031 chr11 112024477 114392587 2368111 * c(NCAM1-AS1, MIR4301, RBM7, NXPE1, DRD2, ANKK1, REXO2, HTR3A, PLET1, IL18, NCAM1, NNMT, C11orf71, TTC12, TEX12, USP28, PTS, CLDN25, ZBTB16, TMPRSS5, BCO2, HTR3B, ZW10) 0.438993270751137 38 0.0405681205379659 0.989883678325862 1544 0.495255342184111 3 2 1 -6.77385527445695 LTS-031 chr11 114392588 114392685 98 * NXPE1 NA 0 NA 0.818 1 NA NA NA NA NA LTS-031 chr11 114392686 114578494 185809 * c(NXPE1, NXPE2, NXPE4) 0.399701106023676 18 0.0913299698822506 0.685647944194332 179 0.40476454988659 1 1 0 -6.76325017458935 LTS-031 chr11 114578495 114578652 158 * character(0) NA 0 NA 1.074 1 NA NA NA NA NA LTS-031 chr11 114578653 117978498 3399846 * c(BACE1-AS, TMPRSS4-AS1, FXYD6-FXYD2, LOC100652768, APOA5, CEP164, SIK3, BACE1, CADM1, RNF214, LINC00900, APOA1, APOA4, APOC3, IL10RA, FXYD2, PAFAH1B2, SIDT2, FXYD6, TMPRSS4, DSCAML1, TAGLN, TMPRSS13, BUD13, ZPR1, PCSK7) 0.438999841913692 37 0.0518679166805529 1.16978440839312 2312 0.478916190794365 5 3 2 -6.75360271217598 LTS-031 chr11 117978499 117978567 69 * TMPRSS4 NA 0 NA 0.954 1 NA NA NA NA NA LTS-031 chr11 117978568 118243411 264844 * c(MPZL2, JAML, MPZL3, TMPRSS4, SCN2B, SCN4B, CD3D, CD3E, CD3G, UBE4A) 0.440601071209161 24 0.0342820515426223 0.925258892646713 743 0.487112892472601 2 1 1 -6.73705042923891 LTS-031 chr11 118243412 118243765 354 * UBE4A NA 0 NA 1.306 1 NA NA NA NA NA LTS-031 chr11 118243766 123601364 5357599 * c(LOC100131626, USP2-AS1, MIR3656, MIR4493, MIR4492, HYOU1, ATP5L, TREH, TTC36, DDX6, DPAGT1, TBCEL, TMEM136, OAF, PHLDB1, ARHGEF12, TRIM29, SLC37A4, POU2F3, HINFP, BCL9L, FOXR1, CCDC153, GRIK4, H2AFX, HMBS, HSPA8, CCDC84, LOC341056, ARCN1, BSX, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, KMT2A, TRAPPC4, SCN3B, VPS11, CRTAM, IFT46, GRAMD1B, NECTIN1, RPS25, SC5D, ABCG4, CXCR5, LOC649133, RPL23AP64, NA NA NA NA NA NA NA NA NA LTS-031 SORL1, TECTA, THY1, UPK2, ZNF202, RNF26, NLRX1, CLMP, PDZD3, C11orf63, MFRP, TMEM25, UBASH3B, CBL, USP2, UBE4A, C2CD2L) 0.410108102846222 95 0.0738709067377817 1.0930003300142 6688 0.726693148329963 4 3 1 -6.76119942887213 LTS-031 NA NA NA NA LTS-031 chr11 123601365 123848245 246881 * c(OR10S1, OR6T1, OR4D5, TMEM225, OR8D4, OR6X1, OR6M1, ZNF202) 0.423880945821941 9 0.0738056757829489 0.689616089288737 193 0.315548968808838 1 1 0 -6.75191384338348 LTS-031 chr11 123848246 123988292 140047 * c(OR10G8, OR10G9, OR10S1, OR10G4, OR10G7, VWA5A) 0.452646675030958 5 0.0351965907439911 0.429581130010073 97 0.165263314315123 0 0 0 -7.30321450322283 LTS-031 chr11 123988293 124180522 192230 * c(OR8G2, OR8D1, VWA5A) 0.446186560668695 14 0.0364974784617504 0.835644110673342 264 0.331434849464343 2 1 1 -6.76064985788876 LTS-031 chr11 124180523 124441071 260549 * c(OR8B12, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, OR8B3, OR8A1) 0.422894024564603 9 0.0692870438425861 0.573409341622853 196 0.211832085182876 0 0 0 -6.81502902232926 LTS-031 chr11 124441072 124441179 108 * character(0) NA 0 NA 1.212 1 NA NA NA NA NA LTS-031 chr11 124441180 125496814 1055635 * c(CHEK1, PANX3, TMEM218, SLC37A2, HEPACAM, VSIG2, STT3A, NRGN, SPA17, SIAE, ROBO4, PKNOX2, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM, EI24, FEZ1) 0.407293248148787 38 0.0836619391174924 1.09474257902991 1739 0.536197158698168 4 3 1 -6.74781474248255 LTS-031 chr11 125496815 125497464 650 * CHEK1 NA 0 NA 0.584 1 NA NA NA NA NA LTS-031 chr11 125497465 125769992 272528 * c(PATE3, CHEK1, PATE1, HYLS1, PATE2, PATE4, ACRV1, PUS3) 0.439897958341072 4 0.0306702896410625 0.824846789972837 374 0.86248299576678 2 1 1 -6.73476980064581 LTS-031 chr11 125769993 126391439 621447 * c(TIRAP, HYLS1, DCPS, DDX25, ST3GAL4-AS1, CDON, FOXRED1, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4) 0.449699236921287 37 0.0421690790892003 1.23367786611855 1000 0.621022391953227 6 3 3 -6.77931142657979 LTS-031 chr11 126391440 126396412 4973 * KIRREL3 NA 0 NA 0.607 1 NA NA NA NA NA LTS-031 chr11 126396413 127810855 1414443 * c(MIR3167, KIRREL3-AS2, KIRREL3-AS3, KIRREL3) 0.3658515480064 3 0.0682422156732913 0.77825430053806 114 0.313127590829182 2 2 0 -6.85068606387551 LTS-031 chr11 128328651 128350412 21762 * ETS1 NA 0 NA 1.69426815811742 94 0.872960503267694 9 NA NA -5.76441339941824 LTS-031 chr11 128350413 134856661 6506249 * c(LOC100128239, SENCR, ADAMTS8, VPS26B, GLB1L3, TMEM45B, ADAMTS15, ETS1, C11orf45, SPATA19, IGSF9B, FLI1, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, LOC283177, ZBTB44, THYN1, APLP2, KCNJ1, KCNJ5, SNX19, LINC00167, NFRKB, OPCML, NTM, PRDM10, TP53AIP1, ST14, JAM3, BARX2, GLB1L2, ARHGAP32) 0.406749424349232 83 0.0603849440126811 0.984706278052873 3785 0.466099182908948 3 2 1 -6.8093049885449 LTS-031 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.46 1 NA NA NA NA NA LTS-031 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.452 1 NA 1.05679642730604 5 0.191514490313396 4 4 0 -5.76689319229891 LTS-031 chr12 176140 3920893 3744754 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, PRMT8, PARP11, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, CACNA2D4) 0.431180821646891 93 0.0579867792963623 1.1138283365899 3797 0.490147660441627 4 2 2 -6.7439956920657 LTS-031 chr12 3920894 5603632 1682739 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PARP11, C12orf4, TIGAR, FGF23, DYRK4, CCND2) 0.433269251774298 28 0.0441892874087501 0.902813822497537 1234 0.55545135021988 2 1 1 -6.74517370165407 LTS-031 chr12 5603633 5603699 67 * NTF3 NA 0 NA 1.619 1 NA NA NA NA NA LTS-031 chr12 5603700 7355396 1751697 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ANO2, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, NA NA NA NA NA NA NA NA NA LTS-031 CLSTN3, NCAPD2) 0.424318183084127 94 0.0482578912481581 1.25227635512318 4151 0.630391639050342 5 3 2 -6.7560920804831 LTS-031 NA NA NA NA LTS-031 chr12 7355397 7355926 530 * PEX5 NA 0 NA 0.47 1 NA NA NA NA NA LTS-031 chr12 7355927 7948407 592481 * c(CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, NANOG, CD163, GDF3) 0.422741633131021 5 0.0784008928520588 0.652503347627153 603 0.342462964552524 0 0 0 -6.75799691701822 LTS-031 chr12 7948408 7967140 18733 * c(SLC2A14, NANOG) NA 0 NA 0.33490296785266 57 0.210520001550046 0 NA NA -5.87261955769785 LTS-031 chr12 7967141 7970389 3249 * SLC2A14 NA 0 NA 1.5 1 NA NA NA NA NA LTS-031 chr12 7970390 9090504 1120115 * c(SLC2A14, A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.371978228168655 20 0.126385750362677 0.817830525370033 1264 0.50712872368749 2 2 0 -6.74520337890168 LTS-031 chr12 9090505 9093796 3292 * c(PHC1, M6PR) NA 0 NA 0.354886938849724 52 0.231447555539714 0 NA NA -5.77770369840862 LTS-031 chr12 9093797 11214137 2120341 * c(KLRF2, LINC00987, KLRC4-KLRK1, PRH1-PRR4, KLRG1, KLRA1P, PRR4, TMEM52B, A2M-AS1, CLEC12A, CLECL1, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, A2MP1, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, M6PR, DDX12P, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, PZP, NA NA NA NA NA NA NA NA NA LTS-031 LOC642846, CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.415820456315076 112 0.0706623107615521 0.74572587763025 2697 0.426501823685316 1 1 0 -6.73631643381937 LTS-031 NA NA NA NA LTS-031 chr12 11214138 11214330 193 * c(PRH1-PRR4, TAS2R46, PRB4) 0.26 1 NA 0.718541916985236 3 0.428089943820221 1 1 0 -5.76441222115916 LTS-031 chr12 11214331 11286820 72490 * c(PRH1-PRR4, TAS2R43, TAS2R46, TAS2R30, PRB4) 0.287457714428362 19 0.0741224291488344 0.839685648725357 83 0.412410066421382 4 4 0 -6.75607830205651 LTS-031 chr12 11286821 11418867 132047 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB3, PRB4) 0.438 1 NA 0.745191132269701 33 0.357448743411789 1 1 0 -5.76468870841649 LTS-031 chr12 11418868 11548488 129621 * c(PRB1, PRB3, PRB4, PRB2) 0.405658377339266 2 0.0134350288425444 0.6360438388918 73 0.393788061386725 6 4 2 -7.03738945080189 LTS-031 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 2.409 1 NA NA NA NA NA LTS-031 chr12 11802940 26225338 14422399 * c(MIR920, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, C12orf77, EMP1, EPS8, ETV6, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, SLCO1B7, KCNJ8, KRAS, RPL13AP20, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, PDE3A, PDE6H, NA NA NA NA NA NA NA NA NA LTS-031 WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, ETNK1, GPRC5D, ATF7IP, H2AFJ, LMO3, CMAS, FAM234B, PTPRO, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, C2CD5) 0.432648260371197 157 0.0666464592516779 0.880624986289717 7080 0.465539035611596 2 1 1 -6.7396111868595 LTS-031 NA NA NA NA LTS-031 chr12 26225339 27136611 911273 * c(RASSF8, FGFR1OP2, ITPR2, TM7SF3, ASUN, BHLHE41, SSPN) 0.425898702884565 15 0.0491542760819734 1.12459097736923 794 0.495383790423004 5 3 2 -6.76026745042869 LTS-031 chr12 27136612 27143313 6702 * TM7SF3 NA 0 NA 0.806 1 NA NA NA NA NA LTS-031 chr12 27143314 33529351 6386038 * c(MANSC4, LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, STK38L, ETFBKMT, SMCO2, OVCH1, SYT10, REP15, H3F3C, TSPAN11, YARS2, ERGIC2, TM7SF3, PKP2, KIAA1551, CCDC91, FAR2, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, C12orf71, FLJ13224, TMTC1, PPFIBP1, MED21) 0.42588752553662 76 0.0583501394336794 0.944767583520307 3964 0.548932078165656 3 2 1 -6.76019089703439 LTS-031 chr12 33529352 34182671 653320 * c(SYT10, ALG10) NA 0 NA 0.792389318480925 129 0.399874632576387 1 NA NA -5.76837236681779 LTS-031 chr12 38710341 38710459 119 * character(0) 0.49 1 NA 0.644078085702132 3 0.0556087523087268 0 0 0 -5.76441074752586 LTS-031 chr12 38710460 44181920 5471461 * c(YAF2, SLC2A13, LRRK2, CNTN1, PRICKLE1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, IRAK4, PPHLN1, KIF21A, ADAMTS20, PUS7L, ZCRB1) 0.407129464900282 84 0.0919807844933217 0.822055581775223 3089 0.425818582670038 1 1 0 -6.84609793776591 LTS-031 chr12 44181921 44187493 5573 * IRAK4 NA 0 NA 0.436 1 NA NA NA NA NA LTS-031 chr12 44187494 44189258 1765 * TWF1 NA 0 NA 0.368960546294073 40 0.146386168255099 0 NA NA -5.77998643390358 LTS-031 chr12 44189259 45568123 1378865 * c(DBX2, NELL2, PLEKHA8P1, TWF1, RACGAP1P, TMEM117) 0.465459703136772 9 0.0377914599406327 0.690151838780201 401 0.305330958084973 0 0 0 -7.05559098287951 LTS-031 chr12 45568124 48104275 2536152 * c(PCED1B-AS1, MIR4698, ANO6, ARID2, AMIGO2, LINC00938, PLEKHA8P1, SLC38A2, SLC38A4, RNY5, RPAP3, SLC38A1, ENDOU, PCED1B, SCAF11) 0.452740470599213 13 0.0545566043382749 0.991852001017484 1263 0.559695458142049 4 2 2 -6.82645528118786 LTS-031 chr12 48104276 48196388 92113 * c(RAPGEF3, HDAC7, SLC48A1, ENDOU) 0.441314265249599 19 0.039439419826581 1.28853514891094 554 0.549830014310548 6 3 3 -6.73592824025185 LTS-031 chr12 48196389 48235326 38938 * c(HDAC7, VDR) NA 0 NA 0.84 1 NA NA NA NA NA LTS-031 chr12 48235327 52409623 4174297 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, TUBA1B, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, GRASP, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, ANKRD33, H1FNT, OR8S1, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, FIGNL2, ASIC1, ATF1, SLC11A2, DHH, FKBP11, BIN2, NA NA NA NA NA NA NA NA NA LTS-031 LIMA1, PFKM, POU6F1, KANSL2, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, COX14, CCDC65, CCNT1, ACVR1B, FMNL3, CERS5, ACVRL1, DDX23, SLC4A8, DAZAP2) 0.446041545241349 119 0.0387845329261912 0.989820132236729 8421 0.958160271633004 4 2 2 -6.78615632841148 LTS-031 NA NA NA NA LTS-031 chr12 52409624 52600426 190803 * c(KRT80, GRASP, C12orf80, NR4A1, ATG101) 0.418206874710397 6 0.195023502857134 1.34994606949259 248 0.713924167077983 6 4 2 -6.73433768913906 LTS-031 chr12 52600427 53443048 842622 * c(KRT71, KRT74, KRT72, KRT78, EIF4B, TNS2, LOC283335, C12orf80, LINC00592, KRT6C, KRT73, KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT76, KRT75) 0.434087757645383 91 0.0695392405977085 0.856833822053463 1883 1.09303660296733 2 1 1 -6.73580638966063 LTS-031 chr12 53443049 53443625 577 * c(TNS2, LOC283335) NA 0 NA 1.494 1 NA NA NA NA NA LTS-031 chr12 53443626 53491795 48170 * c(TNS2, LOC283335, IGFBP6, SPRYD3) 0.455285348782735 3 0.0487544869729956 1.46000787332093 292 0.563346306956437 8 4 4 -6.80237997359236 LTS-031 chr12 53491796 53492917 1122 * IGFBP6 NA 0 NA 0.541 1 NA NA NA NA NA LTS-031 chr12 53492918 54813255 1320338 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, SP7, COPZ1, CBX5, SMUG1, ZNF385A, AMHR2, ZNF740, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, IGFBP6, ITGA5, ITGB7, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, CSAD, ATP5G2, PFDN5, GPR84, PRR13, CALCOCO1, RARG, C12orf10, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, MFSD5, NPFF, ESPL1 NA NA NA NA NA NA NA NA NA LTS-031 ) 0.460911084897146 43 0.0331855416889216 1.09419450773385 3090 0.586897706137344 4 2 2 -6.99146008037512 LTS-031 NA NA NA NA LTS-031 chr12 54813256 54852745 39490 * GTSF1 NA 0 NA 0.418 1 NA NA NA NA NA LTS-031 chr12 54852746 55523522 670777 * c(DCD, MUCL1, GTSF1, NCKAP1L, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.440080294934206 10 0.0335971228926923 0.793426734308189 658 0.365670326946222 2 1 1 -6.76271743156113 LTS-031 chr12 55523523 56031358 507836 * c(OR2AP1, OR10P1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C2, OR6C4, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, OR9K2) 0.446596036190851 21 0.0399773745534956 0.521344971237641 451 0.225730418896689 0 0 0 -7.02445163995308 LTS-031 chr12 56031359 56031457 99 * OR10P1 NA 0 NA 0.658 1 NA NA NA NA NA LTS-031 chr12 56031458 59314301 3282844 * c(AGAP2-AS1, MIR1228, LOC100506844, BLOC1S1-RDH5, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, OR10P1, SDR9C7, LRIG3, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, B4GALNT1, METTL21B, BLOC1S1, SNORD59A, GLS2, GLI1, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, INHBC, ITGA7, KIF5A, LRP1, MIR26A2, NA NA NA NA NA NA NA NA NA LTS-031 MARS, METTL1, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, ATP23, MARCH9, COQ10A, CD63, ZBTB39, PAN2) 0.429991375845373 112 0.0740487981083218 1.0399070621363 8307 0.464944191911698 3 2 1 -6.75652682818139 LTS-031 NA NA NA NA LTS-031 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.098 1 NA NA NA NA NA LTS-031 chr12 59445677 62652684 3207008 * c(FAM19A2, SLC16A7) 0.449605251174115 3 0.0164418166068514 0.700282685188451 220 0.353609463911865 0 0 0 -7.07898665245141 LTS-031 chr12 62652685 62654132 1448 * c(FAM19A2, USP15) NA 0 NA 2.683 1 NA NA NA NA NA LTS-031 chr12 62654133 63359795 705663 * c(MON2, LINC01465, MIRLET7I, PPM1H, USP15) 0.435952570782085 15 0.050692161505456 1.0318774103957 674 0.565591862361934 4 2 2 -6.74051364743313 LTS-031 chr12 63359796 63539030 179235 * AVPR1A NA 0 NA 0.468 1 NA NA NA NA NA LTS-031 chr12 63539031 63974634 435604 * c(DPY19L2, AVPR1A) 0.468265874899434 2 0.0240416305603427 0.494922160956131 91 0.243966948160754 0 0 0 -7.82659266997118 LTS-031 chr12 63974635 63976198 1564 * DPY19L2 NA 0 NA 0.86 1 NA NA NA NA NA LTS-031 chr12 63976199 66583138 2606940 * c(MIR548Z, TMEM5, WIF1, IRAK3, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, FLJ41278, TMBIM4, SRGAP1, MIR548C, HMGA2, LLPH) 0.428242405215868 34 0.0904222024065829 1.01836570657679 2166 0.564359132190537 3 2 1 -6.73734178138389 LTS-031 chr12 66583139 77158419 10575281 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, LOC100507377, CCT2, FRS2, GLIPR1, CPSF6, KRR1, IRAK3, OSBPL8, RAB3IP, TPH2, CPM, GLIPR1L2, BEST3, ZFC3H1, PHLDA1, RAB21, ZDHHC17, GRIP1, GLIPR1L1, KCNMB4, TRHDE-AS1, TRHDE, IFNG, KCNC2, LRRC10, LYZ, MDM2, NAP1L1, CNOT2, IL22, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PTPRB, PTPRR, RAP1B, TBC1D15, TSPAN8, MRS2P2, BBS10, NA NA NA NA NA NA NA NA NA LTS-031 YEATS4, THAP2, DYRK2, CAPS2, LGR5, HELB) 0.431715241290738 106 0.0629885748136359 0.898967290961956 5948 0.4741407031511 2 1 1 -6.76104402637893 LTS-031 NA NA NA NA LTS-031 chr12 77158420 77202798 44379 * ZDHHC17 0.409 1 NA 1.2027253915833 24 0.420347455916712 5 5 0 -5.76442855902718 LTS-031 chr12 77202799 80602044 3399246 * c(MIR1252, E2F7, CSRP2, ZDHHC17, PPP1R12A, PAWR, SYT1, NAV3) 0.343634609373675 6 0.082776002963822 0.875489003138451 1165 0.402321176775335 2 2 0 -6.7893052352668 LTS-031 chr12 80602045 88423095 7821051 * c(MIR4699, MIR548AL, TSPAN19, TMTC2, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, NTS, SLC6A15, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, RASSF9) 0.375501399069379 47 0.0896894993322618 0.713970258969734 2074 0.387382811359032 1 1 0 -6.98743604064948 LTS-031 chr12 88423096 93793115 5370020 * c(POC1B-GALNT4, KERA, NUDT4, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, POC1B, LINC00936, C12orf74, LUM, KITLG, LINC00615, PLEKHG7, ATP2B1, CLLU1OS, CLLU1, LOC643339, BTG1, LOC728084, CEP290, EEA1, GALNT4, C12orf29) 0.433337239421795 23 0.0495163964539683 0.901046567651922 2051 0.512744135323707 2 1 1 -6.75057060602067 LTS-031 chr12 93793116 93795604 2489 * NUDT4 0.362 1 NA 0.483444752031481 54 0.328252687794061 0 0 0 -5.76559163552533 LTS-031 chr12 93795605 93795616 12 * NUDT4 NA 0 NA 1.075 1 NA NA NA NA NA LTS-031 chr12 93795617 96292170 2496554 * c(PGAM1P5, MIR3685, MIR5700, PLXNC1, METAP2, NUDT4, CCDC38, SOCS2-AS1, CEP83-AS1, KRT19P2, MRPL42, MIR331, CEP83, VEZT, FGD6, NDUFA12, TMCC3, NTN4, SNRPF, NR2C1, UBE2N, USP44, CRADD, SOCS2) 0.398954378385065 39 0.061629831797121 0.913284699690779 1902 0.402527713525359 2 2 0 -6.88759576643261 LTS-031 chr12 96292171 96292256 86 * CCDC38 NA 0 NA 0.775 1 NA NA NA NA NA LTS-031 chr12 96292257 104645502 8353246 * c(TMPO-AS1, MIR1827, MIR1251, MIR4303, MIR3652, DEPDC4, CCDC38, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SLC5A8, FAM71C, RMST, ELK3, UHRF1BP1L, SLC17A8, TTC41P, UTP20, GAS2L3, LINC00485, HCFC2, HAL, APAF1, IGF1, C12orf42, ARL1, LTA4H, MIR135A2, ASCL1, MYBPC1, NFYB, SYCP3, PAH, CCDC53, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, DRAM1, STAB2, GOLGA2P5, SCYL2, ANKS1B, CHPT1, LOC643711, LOC643770, ACTR6, NA NA NA NA NA NA NA NA NA LTS-031 SNORA53, TDG, TMPO, HSP90B1, C12orf73, TXNRD1, NUP37, GNPTAB, GLT8D2, NR1H4) 0.374416171603141 140 0.0784716532240288 0.769871780377495 5922 0.446950724091183 1 1 0 -6.91221662732907 LTS-031 NA NA NA NA LTS-031 chr12 104645503 104651687 6185 * TXNRD1 NA 0 NA 1.113 1 NA NA NA NA NA LTS-031 chr12 104651688 106757727 2106040 * c(MIR3922, CKAP4, C12orf45, ALDH1L2, KIAA1033, TCP11L2, C12orf75, EID3, CHST11, APPL2, POLR3B, TXNRD1, SLC41A2, NUAK1) 0.403001557013947 30 0.0607128250572874 0.906022758850946 1457 0.4049625595278 3 2 1 -6.89414113640148 LTS-031 chr12 106757728 106760347 2620 * POLR3B NA 0 NA 0.624 1 NA NA NA NA NA LTS-031 chr12 106760348 108913578 2153231 * c(LOC100287944, LOC100505978, PRDM4, PWP1, FICD, ASCL4, BTBD11, CMKLR1, CRY1, RIC8B, POLR3B, RFX4, LOC728739, MTERF2, TMEM263, WSCD2) 0.373574363401655 33 0.0690534762032845 0.726065959163871 1419 0.490108532086676 2 2 0 -6.91693832725001 LTS-031 chr12 108913579 108913590 12 * character(0) 0.406 1 NA 1.342 1 NA NA NA NA NA LTS-031 chr12 108913591 110813649 1900059 * c(USP30-AS1, MIR4497, ALKBH2, FOXN4, DAO, ISCU, CORO1C, MYO1H, IFT81, ACACB, MMAB, TMEM119, C12orf76, MVK, ATP2A2, GLTP, ANAPC7, SSH1, SVOP, TRPV4, SELPLG, UNG, KCTD10, TCHP, USP30, FAM222A, FAM222A-AS1, ANKRD13A, UBE3B, SART3, GIT2) 0.378061901923348 65 0.0902192654890551 0.940271161147916 3605 0.595278182677406 2 2 0 -6.75560382884372 LTS-031 chr12 110813650 113596767 2783118 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, DTX1, ALDH2, RPH3A, CUX2, HECTD4, FAM216A, CFAP73, MYL2, OAS1, OAS2, OAS3, GPN3, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, DDX54, TCTN1, NAA25, ACAD10, BRAP, HVCN1, RASAL1, MAPKAPK5, ADAM1A, TMEM116) 0.373244565281761 63 0.0574646666746326 0.801330094271346 4075 0.411202535553826 2 2 0 -6.81136901468123 LTS-031 chr12 113596768 123104874 9508107 * c(LINC00173, MIR1178, PXN-AS1, NRAV, CLIP1-AS1, MIR4498, MIR4472-2, MIR4700, CAMKK2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, SPPL3, COX6A1, TMEM120B, WDR66, LINC00934, CCDC60, PLBD2, MLXIP, FBXO21, SETD1B, MED13L, SIRT4, LRRC43, TBX5-AS1, FBXW8, HSPB8, MORN3, KSR2, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, CFAP73, TMEM233, MSI1, NOS1, P2RX4, P2RX7, PEBP1, TAOK3, POP5, ANAPC5, TRIAP1, PLA2G1B, TPCN1, NA NA NA NA NA NA NA NA NA LTS-031 RHOF, VSIG10, TESC, ZCCHC8, PRKAB1, WSB2, DIABLO, PSMD9, PXN, RFC5, BCL7A, RPLP0, CLIP1, LHX5, MAP1LC3B2, SUDS3, C12orf43, VPS33A, RSRC2, TBX5, TBX3, HNF1A, MIR620, DDX54, B3GNT4, C12orf49, SLC8B1, RNF34, COQ5, SRRM4, KDM2B, UNC119B, ORAI1, RNFT2, RITA1, OASL, DYNLL1, SRSF9, HRK, BICDL1, CABP1, KNTC1, MLEC, RBM19, RNF10) 0.390693133077265 135 0.0747869574153623 0.889776099752168 8786 0.433096248870744 2 2 0 -6.79126542656701 LTS-031 NA NA NA NA LTS-031 chr12 123104875 123201383 96509 * c(HCAR2, HCAR3, KNTC1) 0.402952934413044 10 0.114201041053827 0.448110677995259 130 0.21139372868449 0 0 0 -6.96177274814183 LTS-031 chr12 123201384 124809417 1608034 * c(MIR4304, MIR3908, LOC100507091, ZNF664-FAM101A, MPHOSPH9, TMED2, SNRNP35, RFLNA, ZNF664, RILPL2, DNAH10, EIF2B1, ABCB9, ATP6V0A2, HCAR1, GTF2H3, RILPL1, KMT5A, ARL6IP4, SBNO1, PITPNM2, DDX55, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, NCOR2) 0.366948764243209 15 0.0688024778069871 0.84232372279134 2970 0.364073050265434 2 2 0 -6.74407435744957 LTS-031 chr12 124809418 125467248 657831 * c(MIR5188, DHX37, UBC, SCARB1, NCOR2) 0.40730666435019 27 0.0644936446437182 1.18253040720143 648 0.547569926363504 6 4 2 -6.75167846925988 LTS-031 chr12 125467249 125470639 3391 * DHX37 NA 0 NA 0.776 1 NA NA NA NA NA LTS-031 chr12 125470640 131275427 5804788 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, BRI3BP, GLT1D1, STX2, RIMBP2, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, DHX37, AACS, TMEM132C, PIWIL1) 0.361347617752538 32 0.0875710253212011 0.703914671861186 1559 0.353771312584381 1 1 0 -7.13587322925633 LTS-031 chr12 131275428 131275431 4 * STX2 NA 0 NA 0.798 1 NA NA NA NA NA LTS-031 chr12 131275432 133768135 2492704 * c(LOC100130238, ZNF605, LRCOL1, ZNF891, ZNF268, LINC01257, PGAM5, STX2, P2RX2, ANKLE2, GOLGA3, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, ZNF10, ZNF140, NOC4L, PUS1, ULK1) 0.386564819869268 95 0.0747917646717201 0.917516156641984 3531 0.462864977399359 2 2 0 -6.78131409803438 LTS-031 chr12 133768136 133812682 44547 * c(ZNF268, ANHX) 0.418079135516297 10 0.0616589184321475 0.56667580670809 210 0.303719788024637 1 1 0 -6.75819362406892 LTS-031 chr12 133812683 133812708 26 * character(0) NA 0 NA 0.745 1 NA NA NA NA NA LTS-031 chr13 19271620 19271676 57 * character(0) 0.304 1 NA 0.358 1 NA NA NA NA NA LTS-031 chr13 19271677 19756002 484326 * c(RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C) 0.208 1 NA 0.701611487252539 44 0.360073285792836 0 0 0 -5.77885857845837 LTS-031 chr13 19756003 19759358 3356 * character(0) NA 0 NA 0.232 1 NA NA NA NA NA LTS-031 chr13 19759359 19801493 42135 * character(0) NA 0 NA 0.26948695216509 39 0.129287307293719 0 NA NA -6.74645233362612 LTS-031 chr13 19801494 19931576 130083 * c(ANKRD26P3, LINC00421) NA 0 NA 0.457 1 NA NA NA NA NA LTS-031 chr13 19931577 20978809 1047233 * c(GJB6, GJA3, GJB2, CRYL1, MPHOSPH8, PSPC1, ZMYM2, ZMYM5, TPTE2) 0.355152213154522 14 0.0674304281267933 0.666466421651266 724 0.387379311036411 2 2 0 -7.05364111179664 LTS-031 chr13 20978810 25259545 4280736 * c(MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, MRPL57, IFT88) 0.383306043785245 46 0.0971943642627722 0.782402651709104 2161 0.41603959955456 1 1 0 -6.81778270528082 LTS-031 chr13 25259546 25262511 2966 * ATP12A NA 0 NA 0.471 1 NA NA NA NA NA LTS-031 chr13 25262512 25525562 263051 * c(ATP12A, CENPJ, RNF17, TPTE2P1) 0.392799281875552 13 0.0442631988138089 0.564093206264325 424 0.267032330878532 1 1 0 -7.10724695725857 LTS-031 chr13 25525563 25599933 74371 * TPTE2P1 NA 0 NA 0.082 1 NA NA NA NA NA LTS-031 chr13 25599934 25603532 3599 * character(0) NA 0 NA 0.24473720778911 39 0.178745848266763 0 NA NA -5.82768156684554 LTS-031 chr13 25603533 25670213 66681 * character(0) NA 0 NA 0.712 1 NA NA NA NA NA LTS-031 chr13 25670214 25823624 153411 * c(AMER2, PABPC3, MTMR6) 0.35238873934591 30 0.0697129500329663 0.591552073296626 405 0.319341999510345 2 2 0 -6.90247022254712 LTS-031 chr13 25823625 25825805 2181 * MTMR6 NA 0 NA 0.776 1 NA NA NA NA NA LTS-031 chr13 25825806 39585605 13759800 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00366, LINC00398, LINC00423, LINC00457, LINC00571, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, STOML3, EEF1DP3, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, NA NA NA NA NA NA NA NA NA LTS-031 ALG5, HMGB1, FREM2, PDX1, RASL11A, SHISA2, SERTM1, LINC00547, SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, UFM1, ATP8A2, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, TRPC4, CCDC169, PROSER1, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.382801465696661 110 0.0832338912375369 0.764817644324989 7355 0.415486606509027 1 1 0 -6.83686327836113 LTS-031 NA NA NA NA LTS-031 chr13 39585606 39586174 569 * PROSER1 NA 0 NA 1.048 1 NA NA NA NA NA LTS-031 chr13 39586175 45513446 5927272 * c(MIR320D1, MIR4305, OR7E37P, VWA8-AS1, TPTE2P5, MIR5006, LINC00332, SMIM2-IT1, SLC25A15, LHFP, MRPS31, WBP4, AKAP11, LINC00284, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, VWA8, FOXO1, NUFIP1, SUGT1P3, RGCC, DNAJC15, NHLRC3, SERP2, LINC00548, ENOX1, COG6, TSC22D1-AS1, LINC00598, MIR621, NAA16, PROSER1, KBTBD7, TNFSF11, TSC22D1, KBTBD6, EPSTI1, MTRF1) 0.371966718506085 46 0.0859120997816308 0.842176944528374 2491 0.421969687344244 2 2 0 -6.7625632151502 LTS-031 chr13 45513447 45515258 1812 * NUFIP1 NA 0 NA 0.382095440513511 42 0.0892975067706101 0 NA NA -5.80206461985395 LTS-031 chr13 45515259 53254302 7739044 * c(LINC00462, TPT1-AS1, MIR3613, CPB2-AS1, MIR4703, MIR5693, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, MRPS31P5, LPAR6, TRIM13, DLEU1, SUGT1, RCBTB2, ARL11, WDFY2, CPB2, HNRNPA1L2, ST13P4, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SIAH3, KCNRG, LINC00282, MLNR, MED4, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, LCP1, MIR16-1, NA NA NA NA NA NA NA NA NA LTS-031 ALG11, NEK3, VPS36, PHF11, ATP7B, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, LINC00371, SERPINE3, SNORA31, TPT1, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, EBPL, SUCLA2, DLEU2, ITM2B, UTP14C) 0.378431620684128 89 0.0764874511528596 0.75925639376206 5074 0.423745893284279 1 1 0 -6.88608329919776 LTS-031 NA NA NA NA LTS-031 chr13 53254303 58208871 4954569 * c(MIR1297, MIR759, MIR5007, LINC00558, OLFM4, SUGT1, LECT1, PCDH17, PCDH8, PRR20B, PRR20D, PRR20E) NA 0 NA 0.510050876261402 284 0.218697128511808 0 NA NA -8.1000809456364 LTS-031 chr13 58208872 58208970 99 * PCDH17 NA 0 NA 0.586 1 NA NA NA NA NA LTS-031 chr13 58208971 73330341 15121371 * c(MIR3169, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, LINC00348, DACH1, DIS3, PCDH17, OR7E156P, LINC00550, MZT1, PCDH9, KLHL1, ATXN8OS, PCDH20, BORA, TDRD3, DIAPH3) 0.342915578709989 10 0.103905940371301 0.806839177922501 1014 0.418768576992012 2 2 0 -7.09228347244734 LTS-031 chr13 73330342 77459188 4128847 * c(LINC00381, PIBF1, KLF12, KCTD12, COMMD6, DIS3, LINC00347, LMO7, CTAGE11P, KLF5, LMO7DN, UCHL3, TBC1D4) 0.338556581881682 17 0.0763261673577903 1.03053636801771 1324 0.414737079321428 3 3 0 -6.7707925726777 LTS-031 chr13 77459189 77459301 113 * KCTD12 NA 0 NA 0.879 1 NA NA NA NA NA LTS-031 chr13 77459302 101707031 24247730 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR548AN, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, SOX21, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, GPR180, DCT, CLYBL, GPR183, EDNRB, GPC5, DZIP1, MYCBP2, NA NA NA NA NA NA NA NA NA LTS-031 DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, MIR19B1, MIR17HG, PCCA, POU4F1, NDFIP2, UGGT2, DNAJC3, RAP2A, RBM26, MIR4500HG, SLC15A1, BTF3P11, MIR622, MIR623, ACOD1, ZIC2, RNF219, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, TM9SF2) 0.347553054270777 69 0.0779880338166364 0.896252756276686 5120 0.467359082101129 2 2 0 -6.81701085204845 LTS-031 NA NA NA NA LTS-031 chr13 101707032 101707130 99 * c(NALCN-AS1, NALCN) NA 0 NA 0.851 1 NA NA NA NA NA LTS-031 chr13 101707131 106143070 4435940 * c(BIVM-ERCC5, MIR2681, MIR4705, MIR548AS, NALCN-AS1, METTL21EP, METTL21C, ERCC5, FGF14, NALCN, DAOA, DAOA-AS1, FGF14-IT1, FGF14-AS2, BIVM, CCDC168, SLC10A2, TPP2, KDELC1, TEX30, ITGBL1) 0.335693332741284 47 0.08334491378062 0.756107757883339 1555 0.373300171276192 2 2 0 -7.20927849324585 LTS-031 chr13 106143071 108183612 2040542 * c(LINC00443, LINC00343, EFNB2, DAOA, DAOA-AS1, LINC00551, ARGLU1, LINC00460, FAM155A) 0.3 1 NA 1.14054851448486 214 0.533253841558276 4 4 0 -5.76939901132317 LTS-031 chr13 108183613 108261763 78151 * FAM155A NA 0 NA 0.544 1 NA NA NA NA NA LTS-031 chr13 108261764 109777738 1515975 * c(TNFSF13B, MYO16, LIG4, FAM155A, ABHD13) 0.381860221294918 11 0.141118969796281 0.680802821949559 450 0.350591245435332 0 0 0 -6.84749869805768 LTS-031 chr13 109777739 109779542 1804 * MYO16 NA 0 NA 1.408 1 NA NA NA NA NA LTS-031 chr13 109779543 111992219 2212677 * c(COL4A2-AS1, MYO16-AS1, TEX29, COL4A1, COL4A2, MYO16, LINC00346, ING1, ANKRD10, RAB20, NAXD, CARS2, IRS2, ARHGEF7) 0.408865144187072 56 0.0693682976170362 0.932216739117208 1558 0.386309761068857 3 2 1 -6.81067550704742 LTS-031 chr13 111992220 113814554 1822335 * c(MCF2L-AS1, TUBGCP3, TEX29, SPACA7, F7, F10, ATP11A, MCF2L, ATP11AUN, SOX1, PROZ) 0.354394278677645 29 0.0679626636126057 0.773667789272728 1091 0.399189047705559 2 2 0 -6.86298472788914 LTS-031 chr13 113814555 113815221 667 * PROZ NA 0 NA 1.174 1 NA NA NA NA NA LTS-031 chr13 113815222 115064542 1249321 * c(LINC00552, GAS6-AS2, LINC00565, ADPRHL1, RASA3, GAS6, TMEM255B, LAMP1, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, UPF3A, TFDP1, GRTP1, CUL4A, PROZ, CDC16) 0.380485087419813 16 0.0746792865079289 0.959307229967165 1244 0.443554917343301 2 2 0 -6.77908889956153 LTS-031 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.724492481994145 89 0.321415434066854 1 NA NA -5.76481028402759 LTS-031 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.391 1 NA 0.50510405341898 5 0.299508263658951 0 0 0 -6.06511444063107 LTS-031 chr14 20201562 20712010 510449 * c(OR4K14, OR4L1, OR11H6, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4Q3, OR4M1, OR4K5, OR4K1, OR4K15) 0.418218852462712 26 0.0624699927965419 0.538514460058734 483 0.335735105613095 0 0 0 -6.88767269167109 LTS-031 chr14 20712011 20754345 42335 * character(0) NA 0 NA 4.58 1 NA NA NA NA NA LTS-031 chr14 20754346 20945307 190962 * c(SNORD126, PARP2, KLHL33, APEX1, PNP, OSGEP, CCNB1IP1, TEP1, RPPH1, TMEM55B, TTC5) 0.455062436932616 30 0.0317856325527998 0.924953418609939 923 0.375546026375034 2 1 1 -6.89121102896535 LTS-031 chr14 20945308 20978557 33250 * PNP NA 0 NA 0.387 1 NA NA NA NA NA LTS-031 chr14 20978558 21460447 481890 * c(EDDM3A, RNASE11, ANG, RNASE10, OR6S1, RNASE9, RNASE12, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17) 0.411245120903544 12 0.135948603256057 0.625634565377629 367 0.479034425150993 0 0 0 -6.75889088448313 LTS-031 chr14 21460448 21460647 200 * METTL17 NA 0 NA 1.044 1 NA NA NA NA NA LTS-031 chr14 21460648 22005417 544770 * c(SUPT16H, TPPP2, RNASE8, LINC00641, SLC39A2, HNRNPC, SNORD8, OR5AU1, RNASE13, ZNF219, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, SALL2, TMEM253, METTL17, SNORD9, RNASE7, RAB2B, TOX4) 0.441459488577489 55 0.0547349167452652 0.95452407318728 1711 0.441548003204384 2 1 1 -6.7472949313789 LTS-031 chr14 22005418 22509019 503602 * c(OR10G3, OR10G2, OR4E2) 0.430500871123728 24 0.045766400402447 0.681206684582418 427 0.338177009778808 0 0 0 -6.75909303989814 LTS-031 chr14 22509020 22509081 62 * character(0) NA 0 NA 0.935 1 NA NA NA NA NA LTS-031 chr14 22509082 23746394 1237313 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.441387507010217 77 0.0446308317364811 1.03833207111891 2600 0.457117015451303 4 2 2 -6.74796500491709 LTS-031 chr14 23746395 23754980 8586 * HOMEZ NA 0 NA 1.608 1 NA NA NA NA NA LTS-031 chr14 23754981 23834887 79907 * c(BCL2L2-PABPN1, EFS, SLC22A17, HOMEZ, BCL2L2, PABPN1, PPP1R3E) 0.459872479551815 2 0.0176776695296637 1.31519772606872 358 0.625178865381125 6 3 3 -7.49227839057207 LTS-031 chr14 23834888 24004621 169734 * c(MIR208B, CMTM5, NGDN, MIR208A, MYH6, MYH7, IL25, THTPA, ZFHX2) 0.454661047145479 24 0.0432781490871063 0.858720168863181 827 0.804582394163406 2 1 1 -6.81400281216955 LTS-031 chr14 24004622 24025234 20613 * c(THTPA, ZFHX2) NA 0 NA 2.139 1 NA NA NA NA NA LTS-031 chr14 24025235 24424439 399205 * c(DHRS2, DHRS4, DHRS4L2, DHRS4-AS1, THTPA, JPH4, AP1G2) 0.468 1 NA 1.15236689187273 340 0.451217620976987 4 4 0 -5.76672455167547 LTS-031 chr14 24424440 24429091 4652 * c(DHRS4, DHRS4L2) NA 0 NA 0.233 1 NA NA NA NA NA LTS-031 chr14 24429092 24476348 47257 * c(DHRS4, DHRS4L2, DHRS4L1) 0.477 1 NA 0.541855000398929 101 0.26286980551875 0 0 0 -5.77738207364386 LTS-031 chr14 24476349 24911699 435351 * c(NEDD8-MDP1, IRF9, TM9SF1, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, DHRS4L1, IPO4, DCAF11, CARMIL3, CPNE6, REC8) 0.451634891639311 64 0.0405211952181172 1.0579027816365 2896 0.482586559839741 4 2 2 -6.79582566775994 LTS-031 chr14 24911700 24911898 199 * SDR39U1 NA 0 NA 0.778 1 NA NA NA NA NA LTS-031 chr14 24911899 39868569 14956671 * c(SLC25A21-AS1, LOC100288846, MIR4307, LINC00645, LOC100506071, MIR4503, MIR548AI, PTCSC3, LINC00609, SEC23A, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, NA, CMA1, TRAPPC6B, MIPOL1, CTSG, CLEC14A, COCH, SPTSSA, FOXG1, SCFD1, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NKX2-8, IGBP1P1, LINC00639, FAM177A1, GPR33, STXBP6, STRN3, GZMH, GZMB, FOXA1, LINC01551, ARHGAP5, MIA2, NFKBIA, NOVA1, PAX9, MBIP, PNN, PPP2R3C, G2E3, NA NA NA NA NA NA NA NA NA LTS-031 EAPP, PRKD1, PSMA6, SDR39U1, SNX6, NPAS3, SRP54, SSTR1, MIR624, NKX2-1, NUBPL, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, SLC25A21, AKAP6, KIAA0391) 0.424306498047625 82 0.0725218383872011 0.858624241484562 5955 0.474665304143539 2 1 1 -6.77043729699707 LTS-031 NA NA NA NA LTS-031 chr14 39868570 39868692 123 * FBXO33 NA 0 NA 0.493 1 NA NA NA NA NA LTS-031 chr14 39868693 45376326 5507634 * c(C14orf28, LRFN5, FBXO33, FSCB) 0.452458394134152 4 0.0215928228816892 0.649485998102896 260 0.282909209315941 0 0 0 -6.96739392131702 LTS-031 chr14 45376327 51722636 6346310 * c(SNORD127, MIR548Y, LINC00871, LINC00648, NA, MAP4K5, TRIM9, C14orf28, LRR1, KLHDC1, RPL10L, ABHD12B, MDGA2, LINC01599, FKBP3, FAM179B, KLHDC2, ATP5S, LINC01588, ARF6, MGAT2, ATL1, NIN, POLE2, KLHL28, PRPF39, DNAAF2, MIS18BP1, FANCM, PYGL, SAV1, RPL36AL, RPS29, SOS2, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.44881282950949 54 0.0431813210193429 0.980351573897807 3318 0.541970525302301 3 2 1 -6.86541545441005 LTS-031 chr14 51722637 59112923 7390287 * c(KTN1-AS1, OTX2-AS1, MIR4308, MIR5580, FRMD6-AS2, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, FRMD6, SOCS4, NAA30, C14orf37, FRMD6-AS1, NID2, ATG14, SAMD4A, GCH1, TIMM9, GMFB, LINC00640, GPR137C, ERO1A, SLC35F4, PSMA3-AS1, TBPL2, TOMM20L, KTN1, LGALS3, OTX2, DACT1, C14orf166, GNG2, TMEM260, FBXO34, C14orf105, AP5M1, ACTR10, PSMA3, PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, ARID4A, RPL13AP3, LINC00520, GNPNAT1, NA NA NA NA NA NA NA NA NA LTS-031 BMP4, STYX, DDHD1, TMX1, MAPK1IP1L, KIAA0586, DLGAP5) 0.391270737428002 64 0.105569656535163 0.83977062507238 4947 0.507406862953688 2 2 0 -6.78813935279601 LTS-031 NA NA NA NA LTS-031 chr14 59112924 59929713 816790 * c(DAAM1, DACT1) 0.449629782164768 4 0.0280757902827329 1.25651804741353 284 0.556190673093331 6 3 3 -6.82834902231353 LTS-031 chr14 59929714 60865097 935384 * c(L3HYPDH, LRRC9, JKAMP, DHRS7, PPM1A, RTN1, PCNX4, GPR135, CCDC175) 0.432990265637842 15 0.0703692979589685 0.895547625939497 995 0.378339179408357 2 1 1 -6.73905655478047 LTS-031 chr14 60865098 60867038 1941 * character(0) 0.489 1 NA 0.364707857305376 50 0.206486645316053 0 0 0 -5.77338829113264 LTS-031 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.759 1 NA NA NA NA NA LTS-031 chr14 60899979 68331561 7431583 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, WDR89, GPHB5, RDH12, PPP1R36, SLC38A6, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, RAB15, ARG2, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, RDH11, ATP6V1D, SIX4, PIGH, PPP2R5E, PRKCH, RHOJ, PLEKHH1, TRMT5, RAD51B, MPP5, FUT8-AS1, LINC00643, NA NA NA NA NA NA NA NA NA LTS-031 SIX1, SNAPC1, SPTB, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5) 0.438408310397305 94 0.0442270263059616 0.911379037156058 5812 0.447368059397342 2 1 1 -6.77001666456202 LTS-031 NA NA NA NA LTS-031 chr14 68331562 69262549 930988 * c(RAD51B, ZFP36L1) 0.465075142509203 2 0.0240416305603426 1.49872455740919 248 1.01940822119559 8 4 4 -7.3826395739404 LTS-031 chr14 69262550 70264068 1001519 * c(LOC100289511, ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SRSF5, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.433876059106117 13 0.0331954198261733 1.12245674313103 996 0.529978994317769 4 2 2 -6.74616274625369 LTS-031 chr14 70264069 70346101 82033 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-031 chr14 70346102 70924457 578356 * c(SYNJ2BP-COX16, ADAM21P1, COX16, SYNJ2BP, SMOC1, SLC8A3, ADAM21) 0.414956502811822 11 0.0771094853262083 0.807377795181221 430 0.431208701942068 1 1 0 -6.74018240238139 LTS-031 chr14 70924458 70924561 104 * ADAM21 NA 0 NA 0.355 1 NA NA NA NA NA LTS-031 chr14 70924562 70926270 1709 * ADAM21 NA 0 NA 0.333563553228958 44 0.162370317419343 0 NA NA -5.78145637319039 LTS-031 chr14 70926271 74180319 3254049 * c(MED6, ACOT2, ACOT4, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, MAP3K9, ZFYVE1, PSEN1, RBM25, ACOT1, ACOT6, DPF3, DNAL1, NUMB, ADAM21, ADAM20, PAPLN, PNMA1, RGS6) 0.429981918965472 44 0.0818287898338107 0.913451427820642 2592 0.451101515607352 2 1 1 -6.75756616709694 LTS-031 chr14 74180320 74353224 172905 * c(MIR4505, PTGR2, ZNF410, ELMSAN1, PNMA1) 0.441060537214767 8 0.0419368147165641 1.28424208785338 284 0.471580302952828 6 3 3 -6.73556290476535 LTS-031 chr14 74353225 74947073 593849 * c(MIR4709, NPC2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) NA 0 NA 0.821956849528219 1130 0.388316937390696 2 NA NA -5.77360003361844 LTS-031 chr14 74947074 77583657 2636584 * c(BATF, NPC2, TMED10, C14orf1, IFT43, JDP2, ISCA2, LRRC74A, DLST, ESRRB, VASH1, TTLL5, ANGEL1, FOS, MLH3, PROX2, LTBP2, FCF1, PGF, FLVCR2, GPATCH2L, YLPM1, IRF2BPL, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, CIPC, EIF2B2, NEK9, ACYP1, AREL1) 0.427651816827986 43 0.0531885215637275 1.02327942692886 3324 0.460649774236297 3 2 1 -6.74197636172305 LTS-031 chr14 77583658 77597610 13953 * character(0) NA 0 NA 0.386 1 NA NA NA NA NA LTS-031 chr14 77597611 81611465 4013855 * c(MIR1260A, DIO2-AS1, AHSA1, NOXRED1, ISM2, CEP128, SAMD15, DIO2, SNW1, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, ADCK1, TMEM63C, NGB, VIPAS39, TSHR, SLIRP, ALKBH1, NRXN3, SPTLC2) 0.420956808813686 51 0.0571613059854372 0.859147994780953 2280 0.441772140710726 2 1 1 -6.79410031700133 LTS-031 chr14 81611466 93182586 11571121 * c(SNORA11B, LINC00911, FBLN5, PTPN21, FOXN3, TTC8, TC2N, SLC24A4, TTC7B, EML5, FLRT2, GALC, LOC283585, LINC01146, FOXN3-AS2, GTF2A1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, LGMN, KCNK13, PSMC1, SEL1L, SNORA79, TSHR, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, GPR65, STON2, EFCAB11, RPS6KA5, TRIP11) 0.449586608559527 115 0.0462713533282238 0.974241660951551 5012 0.504789766101574 3 2 1 -6.86237394780418 LTS-031 chr14 93182587 95054153 1871567 * c(CHGA, IFI27L1, SERPINA12, PRIMA1, LINC00521, SERPINA11, TMEM251, FAM181A-AS1, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA5, SERPINA10, ASB2, SERPINA1, SERPINA4, UBR7, BTBD7, LGMN, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, IFI27L2, GON7, SERPINA6, FAM181A, GOLGA5) 0.421731425134635 78 0.0964094836869721 0.839634430368952 2252 0.384326119342866 2 1 1 -6.76430676512058 LTS-031 chr14 95054154 103410783 8356630 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, CYP46A1, PAPOLA, SERPINA3, ANKRD9, AK7, SLC25A29, DEGS2, LINC00239, GSC, SYNE3, DIO3, DYNC1H1, EML1, RCOR1, DICER1, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CCDC85C, HSP90AA1, SERPINA13P, LINC01550, RTL1, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, NA NA NA NA NA NA NA NA NA LTS-031 MIR299, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, GLRX5, EVL, GSKIP, CINP, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, BDKRB1, BDKRB2, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, TRAF3, MIR654, MIR655, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 MIR656, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, MEG8, WDR25, LINC00341, CLMN, TCL1A, AMN, SETD3, HHIPL1, DLK1, CCNK, WDR20, CDC42BPB, TCL1B, TECPR2) 0.43784486787768 134 0.0697793744098576 0.936531698065612 6730 0.499355799349659 3 2 1 -6.80240954206738 LTS-031 NA NA NA NA LTS-031 chr14 103410784 104230891 820108 * c(LINC00605, CKB, TRMT61A, EIF5, PPP1R13B, KLC1, MARK3, SNORA28, TNFAIP2, XRCC3, ZFYVE21, APOPT1, EXOC3L4, BAG5, CDC42BPB) 0.436084144479258 27 0.0930925618469331 1.12247247635722 1345 0.514350049901684 4 2 2 -6.73409685070461 LTS-031 chr14 104230892 105676365 1445474 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TDRD9, C14orf79, PLD4, ADSSL1, LINC00637, LINC00638, AKT1, PPP1R13B, NUDT14, KIF26A, CEP170B, BRF1, GPR132, JAG2, ASPG, TMEM179, C14orf180, MIR203A, CDCA4, INF2, RD3L, C14orf2) 0.454719140812111 72 0.0354885420906285 0.864380085344598 2326 0.43254823167883 2 1 1 -6.85412187691223 LTS-031 chr14 105676366 105965939 289574 * c(CRIP1, CRIP2, PACS2, C14orf80, BRF1, TEX22, BTBD6, MTA1) 0.424067160295245 7 0.051648537525969 1.04059708941712 868 0.509771367822756 3 2 1 -6.7389576172556 LTS-031 chr14 105965940 105995187 29248 * TMEM121 NA 0 NA 0.281 1 NA NA NA NA NA LTS-031 chr14 105995188 106518895 523708 * c(ELK2AP, TMEM121, ADAM6, FAM30A) 0.388495380776125 21 0.0855002367025406 0.639622720495571 484 0.341434573430567 1 1 0 -6.88195696316573 LTS-031 chr14 106518896 106539113 20218 * character(0) NA 0 NA 0.212 1 NA NA NA NA NA LTS-031 chr14 106539114 106780762 241649 * LINC00226 0.366734343525355 8 0.0598450379850207 0.307440704174602 89 0.491631123551525 2 2 0 -7.32731987004478 LTS-031 chr14 106780763 106791085 10323 * character(0) NA 0 NA 0.772 1 NA NA NA NA NA LTS-031 chr14 106791086 107283157 492072 * LINC00221 0.372170507528661 19 0.0728375987349506 0.726035614355838 222 0.397706573915022 2 2 0 -6.79832573903272 LTS-031 chr15 20169987 20170011 25 * character(0) 0.449 1 NA 0.807 1 NA NA NA NA NA LTS-031 chr15 20170012 22440816 2270805 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.328550285043389 34 0.0969617966924361 1.03754162015134 290 1.30915613288745 3 3 0 -6.73498409872909 LTS-031 chr15 22440817 22867570 426754 * c(GOLGA8DP, TUBGCP5, GOLGA6L1, REREP3) 0.43 1 NA 0.886043084072117 121 0.482367710350704 2 2 0 -5.76458669142826 LTS-031 chr15 22867571 25230343 2362773 * c(HERC2P7, MIR4508, TUBGCP5, NIPA1, CYFIP1, NPAP1, LOC283683, GOLGA8IP, WHAMMP3, PWARSN, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, MAGEL2, GOLGA8S, SNRPN, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, SNURF) 0.426212295519858 22 0.0606940378766006 0.894162159879276 1052 0.483251361226344 2 1 1 -6.76104115325247 LTS-031 chr15 25230344 25496209 265866 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-031 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-24, SNORD115-27, SNORD115-28, PWAR1, SNORD109B, SNORD115-1, PWAR4, IPW, SNRPN, SNORD116-19, PWAR5, SNURF) 0.433525950574744 3 0.0106926766215636 0.634015170266648 277 0.20955867471143 0 0 0 -6.87233714858379 LTS-031 NA NA NA NA LTS-031 chr15 25496210 25514841 18632 * c(SNORD115-45, SNORD115-47, SNORD109B) NA 0 NA 1.112 1 NA NA NA NA NA LTS-031 chr15 25514842 30503046 4988205 * c(SNORD115-48, LOC100128714, LOC100289656, MIR4715, FAM189A1, GABRA5, GABRB3, GABRG3, DKFZP434L187, APBA2, SNORD109B, HERC2P9, WHAMMP2, OCA2, LINC00929, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8T, TJP1, GOLGA6L7P, UBE3A, HERC2) 0.428231080721038 43 0.0592528601811391 0.917137332546702 1894 0.511429770721355 2 1 1 -6.77689893614722 LTS-031 chr15 30503047 30650508 147462 * DKFZP434L187 NA 0 NA 0.193 1 NA NA NA NA NA LTS-031 chr15 30650509 30665383 14875 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.350450744669127 53 0.450905631195522 0 NA NA -5.78090048972688 LTS-031 chr15 30665384 30700100 34717 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 1.776 1 NA NA NA NA NA LTS-031 chr15 30700101 35377492 4677392 * c(WHAMMP1, LOC100288637, MIR1233-2, TMCO5B, LOC100996255, CHRM5, CHRNA7, OTUD7A, PGBD4, FAN1, GOLGA8A, LPCAT4, NUTM1, GREM1, LOC283710, FMN1, HERC2P10, MIR211, TRPM1, GOLGA8B, EMC4, KLF13, MTMR10, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, GOLGA8O, KATNBL1, ARHGAP11B, AQR, ARHGAP11A, SLC12A6) 0.422677101235131 58 0.0583169806825993 0.807494145145288 3475 0.528302825637057 1 1 0 -6.77259843925931 LTS-031 chr15 35377493 35385374 7882 * character(0) NA 0 NA 2.032 1 NA NA NA NA NA LTS-031 chr15 35385375 37376026 1990652 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, CSNK1A1P1, MEIS2, ANP32AP1, C15orf41, DPH6) 0.451512431391753 6 0.0347908033825032 1.07037894884211 329 0.542030816105757 4 2 2 -6.81733855765207 LTS-031 chr15 37376027 37376032 6 * MEIS2 NA 0 NA 1.781 1 NA NA NA NA NA LTS-031 chr15 37376033 37402535 26503 * MEIS2 NA 0 NA 1.89131957539905 61 0.718985347213834 11 NA NA -5.76441057789694 LTS-031 chr15 38228444 40911274 2682831 * c(SRP14-AS1, ANKRD63, RASGRP1, GPR176, CHST14, TMCO5A, SPRED1, FSIP1, BAHD1, RPUSD2, FAM98B, MRPL42P5, IVD, C15orf52, C15orf53, C15orf54, EIF2AK4, PLCB2, PAK6, KNL1, C15orf56, PHGR1, SRP14, BUB1B, THBS1, DISP2, C15orf57, KNSTRN, BMF) 0.439276435230752 55 0.0475642539009943 0.925431832403254 2942 0.438184837074006 2 1 1 -6.75945753719897 LTS-031 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.357 1 NA NA NA NA NA LTS-031 chr15 40912850 40916476 3627 * KNL1 0.436704363634675 3 0.0283607710285411 0.368104667233623 79 0.16133320826656 0 0 0 -6.76255290359759 LTS-031 chr15 40916477 43852785 2936309 * c(JMJD7, PLA2G4B, MIR4310, RAD51-AS1, CHP1, OIP5, TGM7, PLA2G4E, ZSCAN29, TTBK2, CDAN1, ADAL, EXD1, RHOV, UBR1, EPB42, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, TUBGCP4, PLA2G4D, EHD4, ITPKA, LTK, MAP1A, NDUFAF1, NUSAP1, SPTBN5, DLL4, INO80, PPP1R14D, HAUS2, RMDN3, DNAJC17, KNL1, STARD9, VPS18, RAD51, C15orf62, ZNF106, SPINT1, MIR626, MIR627, TP53BP1, OIP5-AS1, NA NA NA NA NA NA NA NA NA LTS-031 TYRO3, CHAC1, TMEM62, CAPN3, ZFYVE19, JMJD7-PLA2G4B, SNAP23, TGM5, PPIP5K1, LCMT2) 0.444602241307195 69 0.0666651203998003 0.96330436306082 6796 0.395674353402614 3 2 1 -6.77593251826141 LTS-031 NA NA NA NA LTS-031 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.129 1 NA NA NA NA NA LTS-031 chr15 43873177 44029073 155897 * c(CKMT1B, CATSPER2, STRC, CATSPER2P1, CKMT1A, PPIP5K1) 0.382036991349635 12 0.0883921616571529 0.56394251727564 445 0.482468608034385 2 2 0 -6.82235830501352 LTS-031 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-031 chr15 44029088 45059573 1030486 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.456448369189387 7 0.0534366558691334 0.918905614280376 1499 0.421086756900736 2 1 1 -6.80718219414357 LTS-031 chr15 45059574 45119384 59811 * TRIM69 NA 0 NA 0.284084058505087 39 0.205933226865228 0 NA NA -6.2897663888119 LTS-031 chr15 45119385 45120601 1217 * character(0) NA 0 NA 2.001 1 NA NA NA NA NA LTS-031 chr15 45120602 45407977 287376 * c(TERB2, DUOXA2, DUOX2, SORD) 0.417073581836989 15 0.0353405203831576 0.75276652063361 379 0.464204981553705 1 1 0 -6.73323226860332 LTS-031 chr15 45407978 52901588 7493611 * c(MIR147B, GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, NA, CYP19A1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, SCG3, TMOD3, TMOD2, HDC, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, DUOXA2, MYO5A, MYEF2, DUOX1, TRPM7, FLJ10038, MYO5C, MAPK6, FAM214A, DTWD1, SQRDL, NA NA NA NA NA NA NA NA NA LTS-031 SLC12A1, SLC30A4, SPATA5L1, ATP8B4, SEMA6D, C15orf48, SPPL2A, SHF, DUOXA1, USP8, SLC28A2, COPS2, SECISBP2L) 0.43636598226586 135 0.0756773445319058 0.929582154367961 6675 0.464495247709922 2 1 1 -6.80923936415816 LTS-031 NA NA NA NA LTS-031 chr15 52901589 56688579 3786991 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, WDR72, PYGO1, PRTG, ONECUT1, TEX9, UNC13C, NEDD4, RSL24D1, FAM214A, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.434114225853157 56 0.0457990777143003 0.810071605885965 1994 0.368024094310068 2 1 1 -6.83672769453027 LTS-031 chr15 56688580 58004436 1315857 * c(MYZAP, GCOM1, LOC145783, LINC00926, TEX9, ZNF280D, MNS1, TCF12, POLR2M, CGNL1) 0.396355833797937 28 0.103578376887892 1.07879123386854 835 0.502577625308845 4 3 1 -6.73475161509732 LTS-031 chr15 58004437 58006653 2217 * c(GCOM1, POLR2M) NA 0 NA 0.718 1 NA NA NA NA NA LTS-031 chr15 58006654 60297933 2291280 * c(MIR2116, ADAM10, FAM81A, GCOM1, FOXB1, GTF2A2, AQP9, LIPC, MYO1E, FAM63B, RNF111, BNIP2, HSP90AB4P, SLTM, POLR2M, ALDH1A2, CCNB2, GCNT3, LDHAL6B) 0.401442213013853 42 0.0919856607771988 0.900521761309002 1763 0.398870409621842 2 2 0 -6.81348309655416 LTS-031 chr15 60297934 78386608 18088675 * c(NR2E3, DNM1P35, USP3-AS1, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR548H4, MIR4311, MIR4312, MIR4313, IQCH-AS1, MIR4513, MIR4511, SCAMP2, SNUPN, PDCD7, MIR5003, TSPAN3, FEM1B, DENND4A, SNAPC5, HMG20A, CORO2B, ARID3B, CLPX, LACTB, DIS3L, CLK3, SENP8, MTFMT, SLC51B, HIGD2B, TMEM266, CSK, C2CD4A, DRAIC, C15orf61, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, MGC15885, LCTL, NA NA NA NA NA NA NA NA NA LTS-031 ETFA, ITGA11, ZNF609, TBC1D2B, DAPK2, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, FOXB1, EWSAT1, REC114, LOC283731, FBXL22, ANXA2, HEXA, TMEM202, GOLGA6A, RBPMS2, ANKDD1A, ISLR, C2CD4B, C15orf59, KBTBD13, UBAP1L, SKOR1, LOXL1, MIR190A, SMAD3, SMAD6, MAN2C1, LINC00593, MPI, UBL7-AS1, MYO9A, NEO1, OAZ2, SCAPER, RPS27L, RASL12, SPG21, HACD3, RAB8B, PKM, PML, CSNK1G1, PPIB, VPS13C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 LRRC49, PAQR5, DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZWILCH, UACA, IMP3, LARP6, GOLGA6B, MAP2K1, MAP2K5, C15orf39, THAP10, PARP6, FAM219B, ISLR2, IGDCC4, PTPN9, BBS4, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, PPCDC, CELF6, RORA, RPL4, RPLP1, STRA6, LOC645752, SH2D7, IQCH, ISL2, GOLGA6C, GOLGA6D, SNX1, SCARNA14, FBXO22-AS1, MIR629, MIR630, MIR631, TLE3, TPM1, LOC729739, TYRO3P, CA12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 NOX5, NEIL1, ICE2, AAGAB, LMAN1L, PEAK1, SNX22, THSD4, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, PLEKHO2, CD276, ANP32A, VWA9, LINC00597, ADPGK, APH1B, TLN2, FAM96A, MEGF11, SEMA7A, CILP, LINGO1, UBL7, PIAS1, RAB11A, HERC1, PSTPIP1, LOC91450, CALML4, SLC24A1, UBE2Q2, TRIP4, COX5A, STOML1, KIF23, IGDCC3, KIAA0101, USP3) 0.443695154606904 273 0.0648106949069047 1.06145035562237 17023 0.686564555829471 4 2 2 -6.76940169647543 LTS-031 NA NA NA NA LTS-031 chr15 78386609 78390229 3621 * SH2D7 NA 0 NA 0.61 1 NA NA NA NA NA LTS-031 chr15 78390230 79048821 658592 * c(CIB2, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, ACSBG1, IDH3A, IREB2, DNAJA4, PSMA4, SH2D7, LOC646938, WDR61) 0.436548680774251 23 0.0467157327224402 0.837286725706616 1126 0.441290796545597 2 1 1 -6.73816872230302 LTS-031 chr15 79048822 79054822 6001 * ADAMTS7 NA 0 NA 1.67 1 NA NA NA NA NA LTS-031 chr15 79054823 79350865 296043 * c(MORF4L1, ADAMTS7, CTSH, RASGRF1) 0.438193664626999 12 0.0616748561310675 1.14215736809039 457 0.557715456727678 4 2 2 -6.73378212070797 LTS-031 chr15 79350866 79356786 5921 * RASGRF1 NA 0 NA 0.678 1 NA NA NA NA NA LTS-031 chr15 79356787 80263332 906546 * c(ST20-MTHFS, MTHFS, KIAA1024, TMED3, ST20-AS1, ANKRD34C, ST20, MIR184, RASGRF1, BCL2A1, ANKRD34C-AS1) 0.442984945188984 12 0.0447256790181699 0.777171323901327 386 0.399447855218203 2 1 1 -6.78607743004982 LTS-031 chr15 80263333 80263345 13 * BCL2A1 0.358 1 NA 1.578 1 NA NA NA NA NA LTS-031 chr15 80263346 82564154 2300809 * c(MIR4514, CFAP161, FAH, MESDC2, LINC00927, SAXO2, TMC3, IL16, ZFAND6, CEMIP, ABHD17C, MESDC1, BCL2A1, MIR549A, EFL1, STARD5, MEX3B, ARNT2) 0.454977240952456 26 0.0403033306506852 1.03415582193223 1644 0.484383766115142 4 2 2 -6.85370719192453 LTS-031 chr15 82564155 85164487 2600333 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, HDGFRP3, BTBD1, TM6SF1, ZSCAN2, ADAMTSL3, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, AP3B2, FAM103A1, HOMER2) 0.449846875936102 16 0.0421041862526757 0.865933185098078 1396 0.443278606535422 2 1 1 -6.77593152083039 LTS-031 chr15 85164488 86313861 1149374 * c(MIR1276, AKAP13, SEC11A, NMB, PDE8A, SCAND2P, ZSCAN2, ALPK3, LOC642423, KLHL25, WDR73, SLC28A1, ZNF592) 0.43742854463078 37 0.0399378270569398 1.08899437588895 1394 0.442771675073529 4 2 2 -6.73412358950462 LTS-031 chr15 86313862 86368944 55083 * KLHL25 NA 0 NA 0.696 1 NA NA NA NA NA LTS-031 chr15 86368945 89392887 3023943 * c(MIR1179, MIR3529, AGBL1, LINC00052, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, AEN, MRPS11, AGBL1-AS1) 0.437898907133117 30 0.0362424149813193 0.890008537886466 977 0.435898567735384 2 1 1 -6.7360956321696 LTS-031 chr15 89392888 89402705 9818 * ACAN 0.423067391169618 6 0.0308074666274265 0.573124334301512 111 0.238522655113633 1 1 0 -6.76060885993685 LTS-031 chr15 89402706 89403566 861 * ACAN NA 0 NA 1.061 1 NA NA NA NA NA LTS-031 chr15 89403567 91509592 2106026 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, ACAN, FES, GABARAPL3, MIR9-3HG, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, MIR9-3, MAN2A2, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MESP1, UNC45A, WDR93, RLBP1, BLM, CRTC3, PEX11A, IQGAP1, TICRR, PRC1, RCCD1) 0.454566795644574 96 0.0455677332265223 0.974778696946352 3600 0.463130624769508 2 1 1 -6.87334757489014 LTS-031 chr15 91509593 91509619 27 * c(PRC1-AS1, PRC1) NA 0 NA 0.697 1 NA NA NA NA NA LTS-031 chr15 91509620 93044265 1534646 * c(PRC1-AS1, C15orf32, VPS33B, SLCO3A1, ST8SIA2, PRC1, SV2B) 0.40880541861863 13 0.126002543726867 0.822914389759773 852 0.38004806154229 1 1 0 -6.77446338218664 LTS-031 chr15 93044266 93044271 6 * C15orf32 NA 0 NA 0.967 1 NA NA NA NA NA LTS-031 chr15 93044272 96874764 3830493 * c(LINC00930, MIR3175, LINC01578, CHD2, LINC00924, C15orf32, FAM174B, LINC01197, LOC440311, MCTP2, RGMA, NR2F2-AS1, NR2F2, ASB9P1) 0.42840701351326 29 0.0563876449451744 1.06849799819272 864 0.492455273802835 4 2 2 -6.7620133343477 LTS-031 chr15 96874765 96874861 97 * NR2F2 NA 0 NA 2.628 1 NA NA NA NA NA LTS-031 chr15 96874862 96883500 8639 * c(MIR1469, NR2F2) NA 0 NA 1.80427275593677 103 0.815306494161112 10 NA NA -5.76441105492443 LTS-031 chr15 96883501 97326611 443111 * SPATA8-AS1 NA 0 NA 0.993 1 NA NA NA NA NA LTS-031 chr15 97326612 99029251 1702640 * c(SPATA8, FAM169B, ARRDC4, LINC00923) 0.435016758627192 20 0.0505750874807371 0.79776188500902 328 0.360457966620253 2 1 1 -6.80237211353225 LTS-031 chr15 99029252 99192230 162979 * FAM169B NA 0 NA 1.352 1 NA NA NA NA NA LTS-031 chr15 99192231 99514407 322177 * c(MIR4714, PGPEP1L, IGF1R) 0.461098808593075 16 0.0278662729238531 1.32775456661527 343 0.526673446505439 6 3 3 -7.09883736615762 LTS-031 chr15 99514408 99544425 30018 * PGPEP1L NA 0 NA 0.999 1 NA NA NA NA NA LTS-031 chr15 99544426 102516492 2972067 * c(FAM138E, LOC100507472, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, OR4F4, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3) 0.429567565874743 99 0.0673666865720664 1.02228984100484 2476 0.591797642976082 3 2 1 -6.73892058448213 LTS-031 chr15 102516493 102516544 52 * WASH3P NA 0 NA 2.503 1 NA NA NA NA NA LTS-031 chr16 81704 81779 76 * character(0) 0.297 1 NA 1.157 1 NA NA NA NA NA LTS-031 chr16 81780 1416335 1334556 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, TSR3, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSD1, TPSG1, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, PDIA2, UNKL, LMF1, FAM173A, CAPN15, SSTR5, TPSAB1, MIR662, UBE2I, METRN, SNRNP25, NPRL3, AXIN1, NA NA NA NA NA NA NA NA NA LTS-031 FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.402931867406166 142 0.0627863481334666 0.820059768318829 4273 0.394619282914095 1 1 0 -6.79376761197701 LTS-031 NA NA NA NA LTS-031 chr16 1416336 2649768 1233433 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, UNKL, LINC00254, NA NA NA NA NA NA NA NA NA LTS-031 ABCA17P, MRPS34, SNORA78, TSC2, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.425346711129742 57 0.0500780781357915 0.885432054571106 4037 0.402823674674905 2 1 1 -6.77579213809699 LTS-031 NA NA NA NA LTS-031 chr16 2649769 2732788 83020 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.451 1 NA 0.472678877681456 167 0.327474311867765 0 0 0 -5.81002681644459 LTS-031 chr16 2732789 3708262 975474 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, ZNF263, TRAP1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, ZNF597, BICDL2, DNASE1, NLRC3, CLUAP1, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, OR2C1, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, PRSS22, MMP25, C16orf90, TCEB2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, SLX4, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, NA NA NA NA NA NA NA NA NA LTS-031 IL32) 0.398100282208658 62 0.0891173193916162 0.829210960951916 2590 0.403443964818463 1 1 0 -6.78769934050357 LTS-031 NA NA NA NA LTS-031 chr16 3708263 3708788 526 * TRAP1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-031 chr16 3708789 5134595 1425807 * c(LINC01569, NAGPA-AS1, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf89, C16orf71, EEF2KMT, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, PPL, ALG1, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.419162677143114 81 0.0565123006385052 0.940823869138175 2540 0.43068290396052 3 2 1 -6.76024297482017 LTS-031 chr16 5134596 5134981 386 * c(EEF2KMT, ALG1) NA 0 NA 0.518 1 NA NA NA NA NA LTS-031 chr16 5134982 7762121 2627140 * c(EEF2KMT, RBFOX1, ALG1) 0.369340771897103 5 0.0642674100925189 0.585072212447657 203 0.243764077589571 0 0 0 -7.62174459266318 LTS-031 chr16 7762122 9855349 2093228 * c(MIR548X, ABAT, CARHSP1, TMEM186, TMEM114, GRIN2A, C16orf72, PMM2, RBFOX1, USP7, METTL22) 0.393513517893689 37 0.0627724452278217 0.873156495013357 922 0.425628610434509 2 2 0 -6.82244368819598 LTS-031 chr16 9855350 10626117 770768 * c(EMP2, GRIN2A, ATF7IP2) 0.426126261600686 2 0.05939696961967 0.6353829806079 327 0.28341621503146 0 0 0 -6.76185865374855 LTS-031 chr16 10626118 10626217 100 * EMP2 NA 0 NA 0.965 1 NA NA NA NA NA LTS-031 chr16 10626218 12757941 2131724 * c(RMI2, TEKT5, EMP2, CLEC16A, RSL1D1, DEXI, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, TXNDC11, CPPED1, PRM1, PRM2, PRM3, TNFRSF17, TNP2, TVP23A, SNN, SOCS1, SNX29, LITAF) 0.419665517390263 40 0.0584045133486033 0.892901601417226 1527 0.406563452658765 2 1 1 -6.7990403685476 LTS-031 chr16 12757942 13329637 571696 * c(MIR4718, CPPED1, SHISA9) 0.409 1 NA 0.562884914091078 168 0.227070598589195 0 0 0 -5.89190242293545 LTS-031 chr16 14013942 14749034 735093 * c(MIR365A, ERCC4, PARN, BFAR, MIR193B, MKL2) 0.405703391784846 7 0.016580252166501 0.848929618750822 346 0.429725812939806 1 1 0 -7.05251125085931 LTS-031 chr16 14749035 14755772 6738 * BFAR NA 0 NA 0.487 1 NA NA NA NA NA LTS-031 chr16 14755773 15120581 364809 * c(PDXDC1, NOMO1, BFAR, NPIPA3, ABCC6P2, PLA2G10, NPIPA1) 0.418315183741876 2 0.023334523779156 0.589122336052654 193 0.33583487892156 1 1 0 -6.85845132272703 LTS-031 chr16 15120582 15122730 2149 * PDXDC1 NA 0 NA 1.202 1 NA NA NA NA NA LTS-031 chr16 15122731 16302695 1179965 * c(NPIPA5, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, ABCC6, ABCC1, MYH11, RRN3, NDE1, MIR484, C16orf45, KIAA0430) 0.42171617769092 39 0.0688786117593461 0.983737271240554 1317 0.455478124238628 3 2 1 -6.73871799971822 LTS-031 chr16 16302696 17564660 1261965 * c(MIR3179-2, PKD1P1, ABCC6, NOMO3, XYLT1) 0.477543953497845 2 0.0049497474683058 0.728868630648196 181 0.485373389711619 0 0 0 -14.543830318004 LTS-031 chr16 18480701 18793336 312636 * c(NOMO2, ABCC6P1) NA 0 NA 0.376367894101016 63 0.165928664059528 0 NA NA -7.29964683418294 LTS-031 chr16 18793337 18793646 310 * character(0) NA 0 NA 0.582 1 NA NA NA NA NA LTS-031 chr16 18793647 19896627 1102981 * c(COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, RPS15A, CLEC19A, TMC5, TMC7, CCP110) 0.413091822696092 10 0.0666803319327871 0.898083447561992 1493 0.438344490535131 3 2 1 -6.7959999935639 LTS-031 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.45 1 NA NA NA NA NA LTS-031 chr16 20015702 20576242 560541 * c(ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, UMOD) 0.421500393715856 7 0.0563699514685921 0.634475408844783 502 0.299058454575036 0 0 0 -6.78995996871052 LTS-031 chr16 20576243 20599267 23025 * ACSM2B NA 0 NA 2.108 1 NA NA NA NA NA LTS-031 chr16 20599268 20948136 348869 * c(ERI2, ACSM1, DCUN1D3, DNAH3, THUMPD1, LYRM1, ACSM3, LOC81691) 0.432 1 NA 0.907498684973726 526 0.437419028010378 2 2 0 -5.76587471213092 LTS-031 chr16 20948137 20952662 4526 * DNAH3 NA 0 NA 0.591 1 NA NA NA NA NA LTS-031 chr16 20952663 21270229 317567 * c(CRYM, ANKS4B, DNAH3, TMEM159, ZP2) 0.450777645030226 7 0.055149580147778 0.66466351273024 554 0.283694788769785 0 0 0 -6.76326596236921 LTS-031 chr16 21270230 21272562 2333 * CRYM NA 0 NA 0.768 1 NA NA NA NA NA LTS-031 chr16 21272563 23724731 2452169 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, SNX29P1, IGSF6, CDR2, ERN2, EARS2, CRYM, VWA3A, OTOA, GGA2, NPIPB3, PDZD9, EEF2K, SLC7A5P2, CRYM-AS1, NDUFAB1, METTL9, PLK1, POLR3E, UBFD1, USP31, SCNN1B, SCNN1G, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, PALB2, DCTN5, COG7, HS3ST2) 0.43312519261196 48 0.0597032852488332 0.864491794101672 2608 0.381394988512484 2 1 1 -6.73962739555304 LTS-031 chr16 23724732 23765923 41192 * ERN2 NA 0 NA 0.476 1 NA NA NA NA NA LTS-031 chr16 23765924 24373845 607922 * c(CACNG3, PRKCB, CHP2) 0.417326331788626 5 0.0684711618128391 0.659748603691939 341 0.310235063850236 0 0 0 -6.79232395454305 LTS-031 chr16 24373846 24373903 58 * character(0) 0.5 1 NA 1.441 1 NA NA NA NA NA LTS-031 chr16 24373904 24836859 462956 * c(TNRC6A, RBBP6) 0.456778666251861 6 0.0267612904521936 1.0945622441577 416 0.558856924508735 4 2 2 -6.99622763355201 LTS-031 chr16 24836860 28112878 3276019 * c(LCMT1-AS2, SLC5A11, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, TNRC6A, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, KDM8, HS3ST4) 0.440044328304776 31 0.0549253648046577 0.815738436257665 1331 0.322714321769752 2 1 1 -6.82450919704461 LTS-031 chr16 28112879 28608421 495543 * c(SGF29, CLN3, XPO6, IL27, NUPR1, SBK1, APOBR, SULT1A2) 0.422557371575635 13 0.0554632010135249 1.04386551211312 550 0.482199636288362 3 2 1 -6.74340414750698 LTS-031 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.255 1 NA NA NA NA NA LTS-031 chr16 28616944 28734890 117947 * SULT1A1 0.404782873506054 13 0.0892580528579915 0.584123123373426 102 0.418211315864995 1 1 0 -6.77348222155757 LTS-031 chr16 28734891 28834303 99413 * character(0) NA 0 NA 2.116 1 NA NA NA NA NA LTS-031 chr16 28834304 29367348 533045 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.463287970310101 24 0.031396482771718 1.03087884947836 887 0.40618065589824 4 2 2 -7.08991135991013 LTS-031 chr16 29367349 29677253 309905 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SPN, SULT1A3, SLC7A5P1) 0.483 1 NA 0.64714889435214 119 0.41392583952526 0 0 0 -5.76441032373097 LTS-031 chr16 29677254 30198597 521344 * c(SLX1B-SULT1A4, CDIPT, CORO1A, PRRT2, TMEM219, C16orf92, ALDOA, QPRT, KCTD13, ASPHD1, SEZ6L2, C16orf54, INO80E, KIF22, MAZ, SMG1P2, CDIPT-AS1, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, ZG16, SPN, TBX6, GDPD3, PAGR1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.451973066746191 6 0.0339862717382573 1.09655915092608 1545 0.530767335933023 4 2 2 -6.82374405358426 LTS-031 chr16 30198598 30198688 91 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.55 1 NA NA NA NA NA LTS-031 chr16 30198689 30217589 18901 * c(SLX1B-SULT1A4, CORO1A, SMG1P2, SULT1A4, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.471317146524462 63 0.334526867056125 0 NA NA -5.77460538708774 LTS-031 chr16 30217590 30347601 130012 * c(SMG1P2, SMG1P5, LOC613037, LOC613038) NA 0 NA 1.145 1 NA NA NA NA NA LTS-031 chr16 30347602 30485327 137726 * c(CD2BP2, SEPT1, ZNF48, SEPHS2, TBC1D10B, MYLPF, ITGAL, ZNF771, DCTPP1) 0.432941839069387 2 0.0841457069611991 1.09614508471592 438 0.406898264557833 4 2 2 -6.73581506219533 LTS-031 chr16 30485328 30531290 45963 * c(MIR4518, ITGAL) 0.463571631781644 2 0.0289913780286484 0.631089330699422 143 0.219319190267384 0 0 0 -7.14511976771366 LTS-031 chr16 30531291 30532737 1447 * ITGAL NA 0 NA 1.165 1 NA NA NA NA NA LTS-031 chr16 30532738 31226218 693481 * c(MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, SRCAP, STX1B, ZNF689, ZNF785, ZNF688, PRSS36, CTF1, ZNF629, FUS, FBXL19-AS1, PYCARD, PRSS53, ITGAL, TRIM72, PHKG2, FBXL19, PRSS8, FBRS, ZNF747, SNORA30, STX4, LOC730183, PRR14, VKORC1, ZNF768, ZNF668, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.45491257282396 7 0.0473311535380039 1.07310150764292 2588 0.507358557932814 4 2 2 -6.80412499686529 LTS-031 chr16 31226219 31227986 1768 * c(PYDC1, TRIM72) NA 0 NA 0.559 1 NA NA NA NA NA LTS-031 chr16 31227987 31392384 164398 * c(PYDC1, ITGAM, ITGAX, TRIM72) 0.45367650060429 10 0.0358366665116423 0.715348713129361 314 0.28751854533402 0 0 0 -6.84777620287432 LTS-031 chr16 31392385 31394179 1795 * ITGAX 0.306 1 NA 0.603209599659188 27 0.242937618761868 0 0 0 -5.76450137216543 LTS-031 chr16 31394180 33965652 2571473 * c(CLUHP3, ZNF267, ZNF720, COX6A2, ZNF843, ITGAD, ITGAX, SLC6A10P, LOC390705, YBX3P1, NA, AHSP, C16orf58, LINC00273, SLC5A2, TGFB1I1, TP53TG3D, ARMC5) 0.34078392567036 97 0.0867777865320105 0.8323124003223 1123 0.41336158517426 2 2 0 -6.81865065448385 LTS-031 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.740870531288642 113 0.448300666776058 1 NA NA -5.76597088203587 LTS-031 chr16 46508169 46602819 94651 * ANKRD26P1 0.482 1 NA 0.779884872579125 95 0.449188076292702 1 1 0 -5.76457645861482 LTS-031 chr16 46602820 48370289 1767470 * c(MIR548AE2, DNAJA2, ANKRD26P1, ORC6, C16orf87, PHKB, VPS35, SHCBP1, ITFG1, NETO2, LONP2, GPT2, ABCC11, MYLK3, ABCC12) 0.439036459149842 14 0.0683819669693217 0.839922235862383 1459 0.392229172998426 2 1 1 -6.74449495381111 LTS-031 chr16 48370290 48381373 11084 * c(MIR548AE2, LONP2) NA 0 NA 1.204 1 NA NA NA NA NA LTS-031 chr16 48381374 58633421 10252048 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, KATNB1, CES1, CETP, NUDT21, ADCY7, C16orf78, SNX20, CNGB1, CSNK2A2, CYLD, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, ARL2BP, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, CCDC113, CFAP20, BRD7, MT1DP, TEPP, KIFC3, C16orf97, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, NA NA NA NA NA NA NA NA NA LTS-031 MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, HEATR3, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, SIAH1, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, CHD9, LONP2, NLRC5, DRC7, CAPNS2, MT4, NKD1, CBLN1, RSPRY1, ADGRG1, CCDC102A, N4BP1, NUP93, HERPUD1) 0.438230469198824 161 0.0609648235047797 0.926166707766903 7558 0.441657283112341 2 1 1 -6.8336504160676 LTS-031 NA NA NA NA LTS-031 chr16 58633422 58699023 65602 * CNOT1 NA 0 NA 0.728 1 NA NA NA NA NA LTS-031 chr16 58699024 64294714 5595691 * c(CDH8, GOT2, SLC38A7, APOOP5) 0.400166563912826 2 0.0869741340859453 0.701217716046188 307 0.328262782388729 1 1 0 -6.95947326962929 LTS-031 chr16 64294715 64294803 89 * character(0) NA 0 NA 0.953 1 NA NA NA NA NA LTS-031 chr16 64294804 68225515 3930712 * c(CDH5, LINC00920, CKLF-CMTM1, CDH11, CDH16, NUTF2, CTCF, CMTM1, NRN1L, CMTM3, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, DYNC1LI2, AGRP, E2F4, CES3, EDC4, PLEKHG4, LRRC29, TERB1, CES4A, EXOC3L1, LINC00922, TMEM208, FHOD1, ZDHHC1, HSD11B2, HSF4, C16orf86, LCAT, MIR328, NFATC3, PARD6A, CKLF, FAM96B, TPPP3, DUS2, LRRC36, FBXL8, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, DPEP2, NA NA NA NA NA NA NA NA NA LTS-031 DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, TK2, CA7, FAM65A, ELMO3, CENPT, C16orf70, GFOD2, ENKD1, B3GNT9, CBFB, TRADD, CES2, NAE1, NOL3, ATP6V0D1) 0.456210186346655 17 0.0304221523390633 0.982659726385678 4873 0.408312979030983 4 2 2 -7.10766812649271 LTS-031 NA NA NA NA LTS-031 chr16 68225516 68712050 486535 * c(CDH3, ZFP90, PLA2G15, NFATC3, PRMT7, SMPD3, ESRP2, SLC7A6OS, SLC7A6) NA 0 NA 0.994502612121613 730 0.501066199115869 3 NA NA -5.76445096880764 LTS-031 chr16 68712051 68842480 130430 * c(CDH3, CDH1) 0.267 1 NA 0.895034470420447 111 0.346579575464859 2 2 0 -5.76474770705507 LTS-031 chr16 68842481 70154614 1312134 * c(MIR1538, MIR1972-1, NFAT5, WWP2, TMED6, NQO1, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, CHTF8, PDPR, PDF, SNTB2, TERF2, TANGO6, CYB5B, COG8, UTP4, CDH1) 0.401207046689219 33 0.0651920385778769 0.870958956861514 1658 0.426099845101685 1 1 0 -6.84818195276173 LTS-031 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.394 1 NA NA NA NA NA LTS-031 chr16 70161183 70181521 20339 * c(CLEC18C, PDPR) 0.254 1 NA 0.467339479989406 85 0.197506341422145 0 0 0 -5.79746022184429 LTS-031 chr16 70181522 70181537 16 * c(CLEC18C, PDPR) 0.268 1 NA 1.059 1 NA NA NA NA NA LTS-031 chr16 70181538 70608038 426501 * c(SNORD111B, SMG1P7, LOC100506083, DDX19B, EXOSC6, AARS, FUK, SF3B3, COG4, CLEC18C, PDPR, DDX19A, ST3GAL2, SNORD111) 0.363036176695317 14 0.0744050394134019 0.82987664483937 969 0.352394879435642 2 2 0 -6.74276052862666 LTS-031 chr16 70608039 70608338 300 * SF3B3 NA 0 NA 1.625 1 NA NA NA NA NA LTS-031 chr16 70608339 70835097 226759 * c(VAC14-AS1, IL34, SF3B3, VAC14, MTSS1L) 0.444638172324166 3 0.0448441746495573 1.1653841836682 272 0.474399292968124 4 2 2 -6.74554212769715 LTS-031 chr16 70835098 70841168 6071 * character(0) NA 0 NA 0.589 1 NA NA NA NA NA LTS-031 chr16 70841169 72205184 1364016 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, HYDIN, TXNL4B, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.384249045675045 138 0.0703843087275383 0.765219302888719 2363 0.362909436981237 1 1 0 -6.8645165296556 LTS-031 chr16 72816754 72821563 4810 * ZFHX3 NA 0 NA 1.49212070316714 101 0.613567493846399 7 NA NA -5.76441852149408 LTS-031 chr16 72821564 72821652 89 * ZFHX3 NA 0 NA 0.784 1 NA NA NA NA NA LTS-031 chr16 72821653 74367444 1545792 * c(LINC01568, HCCAT5, LOC283922, ZFHX3, PSMD7) 0.401623687515377 8 0.0530552272905992 0.945651264644115 464 0.419757534603678 4 3 1 -6.86606117762666 LTS-031 chr16 74367445 74367458 14 * LOC283922 NA 0 NA 0.175 1 NA NA NA NA NA LTS-031 chr16 74367459 74387789 20331 * LOC283922 0.344901662257438 3 0.0580114931141522 0.472812809728343 80 0.277429974914415 3 3 0 -6.8728206350923 LTS-031 chr16 74387790 74394504 6715 * LOC283922 NA 0 NA 0.762 1 NA NA NA NA NA LTS-031 chr16 74394505 77246942 2852438 * c(SYCE1L, MIR4719, CFDP1, GABARAPL2, TMEM170A, CTRB1, ZFP1, LDHD, MLKL, MON1B, ADAT1, CHST5, GLG1, LOC283922, KARS, CHST6, CTRB2, CLEC18B, TERF2IP, RFWD3, FA2H, TMEM231, WDR59, ZNRF1, CNTNAP4, BCAR1) 0.388616932682476 32 0.0791732927334595 0.817209440769881 1762 0.419114730548493 2 2 0 -6.81424166176393 LTS-031 chr16 77246943 77281855 34913 * SYCE1L NA 0 NA 0.471 1 NA NA NA NA NA LTS-031 chr16 77281856 78085921 804066 * c(CLEC3A, ADAMTS18, NUDT7, VAT1L) 0.482 1 NA 0.631928130387637 294 0.272328751764546 0 0 0 -5.76822308071799 LTS-031 chr16 78085922 78133667 47746 * WWOX NA 0 NA 1.552 1 NA NA NA NA NA LTS-031 chr16 78133668 80575065 2441398 * c(MAF, WWOX, DYNLRB2) 0.393233168145297 13 0.0773654332141316 1.13949335304496 238 0.53366934463244 4 3 1 -6.73876123091342 LTS-031 chr16 80575066 80577109 2044 * DYNLRB2 NA 0 NA 0.677 1 NA NA NA NA NA LTS-031 chr16 80577110 81412470 835361 * c(PKD1L2, C16orf46, CDYL2, ATMIN, GCSH, BCO1, CENPN, CMC2, GAN, DYNLRB2) 0.394199285669358 67 0.0551287420490396 0.71450061444351 839 0.324802461751993 1 1 0 -6.85764392864064 LTS-031 chr16 81412471 81743473 331003 * c(LOC100129617, MIR4720, CMIP, GAN) 0.428499456602099 4 0.0468899420629485 1.17888708906357 175 0.495984730682919 5 3 2 -6.74013558018229 LTS-031 chr16 81743474 81816690 73217 * c(PLCG2, CMIP) NA 0 NA 0.636 1 NA NA NA NA NA LTS-031 chr16 81816691 83828709 2012019 * c(MIR3182, CDH13, MPHOSPH6, HSD17B2, PLCG2, SDR42E1) 0.335229376398151 21 0.0674244550801647 0.642536047842664 477 0.271449248239098 0 0 0 -7.89196467115531 LTS-031 chr16 83828710 85682286 1853577 * c(MIR5093, CDH13, DNAAF1, SLC38A8, ADAD2, LINC00311, GSE1, COTL1, MLYCD, OSGIN1, HSBP1, FAM92B, LOC400548, NECAB2, ZDHHC7, TLDC1, WFDC1, KLHL36, HSDL1, CRISPLD2, MBTPS1, TAF1C, USP10, KCNG4, KIAA0513, ATP2C2) 0.413935676709501 80 0.0632726869303999 0.835222820159584 1729 0.360819019393436 1 1 0 -6.80774983690028 LTS-031 chr16 85682287 85707500 25214 * GSE1 NA 0 NA 1.40314349282895 128 0.548550552287895 7 NA NA -5.76445069422502 LTS-031 chr16 85707501 90141355 4433855 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, IRF8, CTU2, APRT, PABPN1L, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, NA NA NA NA NA NA NA NA NA LTS-031 GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, JPH3, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FBXO31, SLC7A5, CDT1, MAP1LC3B, SPIRE2, ZNF469, CDK10, CBFA2T3, CENPBD1, ZNF276, VPS9D1, PIEZO1) 0.39478976921926 146 0.0703180466216192 0.822845008974743 5383 0.520914281037475 2 2 0 -6.8486950714659 LTS-031 NA NA NA NA LTS-031 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.713047044550128 19 0.501601365453247 1 NA NA -5.76461227469471 LTS-031 chr17 6004 31260 25257 * DOC2B 0.31 1 NA 0.844750025309853 35 0.314362468091434 2 2 0 -5.76459859435607 LTS-031 chr17 31261 2937725 2906465 * c(DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, DOC2B, MIR22HG, NA NA NA NA NA NA NA NA NA LTS-031 SCARF1, RPH3AL, SGSM2) 0.362109900175555 92 0.0704416549766744 1.10012915437999 3567 0.691498350752795 5 4 1 -6.7705142006657 LTS-031 NA NA NA NA LTS-031 chr17 2937726 3379677 441952 * c(RAP1GAP2, OR1A2, OR3A4P, ASPA, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22) 0.301447968102252 7 0.0595215047172828 0.541541811628949 312 0.309182674614946 3 3 0 -7.71081692606865 LTS-031 chr17 3379678 3384912 5235 * c(ASPA, SPATA22) NA 0 NA 1.147 1 NA NA NA NA NA LTS-031 chr17 3384913 6978612 3593700 * c(C17orf107, LOC100130950, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, P2RX5-TAX1BP3, MIR4520-1, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHRNE, CYB5D2, ZFP3, GGT6, SPNS2, CTNS, TRPV3, SLC16A11, FBXO39, SLC16A13, SPNS3, ENO3, NLRP1, CAMTA2, ZZEF1, WSCD1, SHPK, AIPL1, ALOX12, ALOX12P2, ALOX15, BCL6B, RNF167, PELP1, GP1BA, VMO1, SLC13A5, TAX1BP3, LOC339166, SMTNL2, ITGAE, GLTPD2, INCA1, SCIMP, NA NA NA NA NA NA NA NA NA LTS-031 MED11, ARRB2, ASPA, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, ANKFY1, PFN1, PLD2, FAM64A, XAF1, SLC52A1, NCBP3, DHX33, PSMB6, MIR497, CXCL16, C1QBP, LOC728392, UBE2G1, TRPV1, ZNF232, MIS12, PITPNM3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, ZNF594, SPATA22, TXNDC17, TM4SF5, USP6, RABEP1, SPAG7, KIAA0753) 0.338877121157646 133 0.0641215914625 1.00110975182233 6098 0.43653334565838 3 3 0 -6.75433070131729 LTS-031 NA NA NA NA LTS-031 chr17 6978613 7010721 32109 * c(CLEC10A, ASGR2) 0.312820945919467 3 0.0262106848441623 0.643294199460766 68 0.316901986714338 7 6 1 -6.93897822574065 LTS-031 chr17 7010722 7011091 370 * ASGR2 NA 0 NA 1.85 1 NA NA NA NA NA LTS-031 chr17 7011092 8170472 1159381 * c(MIR4314, NA, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4521, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, CLDN7, DNAH2, KCTD11, DLG4, DVL2, EFNB3, EIF5A, C17orf74, FGF11, KDM6B, CTDNEP1, ELP5, ALOX12B, ALOX15B, TMEM256, SENP3, SNORA67, LOC284023, LINC00324, TMEM102, GPS2, GUCY2D, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, ATP1B2, YBX2, PER1, PFAS, POLR2A, BORCS6, WRAP53, PLSCR3, NLGN2, NA NA NA NA NA NA NA NA NA LTS-031 ZBTB4, TRAPPC1, ALOXE3, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, TP53, PHF23, CTC1, TMEM107, NAA38, NEURL4, HES7, TNK1, TNFSF13, TNFSF12, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, CD68, ACAP1) 0.357884356671591 72 0.062291731240251 1.12801944205745 5086 0.498041402204828 5 4 1 -6.74907906332719 LTS-031 NA NA NA NA LTS-031 chr17 8170473 8349227 178755 * c(LOC100128288, KRBA2, ODF4, ARHGEF15, RANGRF, SLC25A35, PFAS, RPL26, RNF222, NDEL1) 0.311016502392028 14 0.0729406276695996 0.852568450693437 407 0.358624431970897 3 3 0 -6.78098398586782 LTS-031 chr17 8349228 8350064 837 * NDEL1 NA 0 NA 1.309 1 NA NA NA NA NA LTS-031 chr17 8350065 8656764 306700 * c(CCDC42, SPDYE4, MYH10, NDEL1) 0.222 1 NA 1.16299925822247 352 0.578232679007281 5 5 0 -5.76550693371789 LTS-031 chr17 8656765 8658918 2154 * SPDYE4 NA 0 NA 0.696 1 NA NA NA NA NA LTS-031 chr17 8658919 9087029 428111 * c(PIK3R6, MFSD6L, PIK3R5, SPDYE4, NTN1) 0.271782572919052 9 0.0339263909073748 0.825829896929779 357 0.467851370913324 5 5 0 -6.92005100677421 LTS-031 chr17 9087030 9395231 308202 * c(NTN1, STX8) 0.487 1 NA 0.88653442332456 111 0.314486068279164 2 2 0 -5.76473694172426 LTS-031 chr17 9395232 10223790 828559 * c(USP43, CFAP52, DHRS7C, RCVRN, GAS7, MYH13, GLP2R, STX8) 0.394558978379494 11 0.0803543289550612 0.76042646487854 659 0.30683908639947 1 1 0 -6.7817116100671 LTS-031 chr17 10223791 10224842 1052 * MYH13 NA 0 NA 0.312 1 NA NA NA NA NA LTS-031 chr17 10224843 10532025 307183 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.350474246321729 4 0.0893476356710126 0.53762878040881 859 0.208159123512972 0 0 0 -7.41097952611311 LTS-031 chr17 10532026 10532946 921 * MYH3 NA 0 NA 1.063 1 NA NA NA NA NA LTS-031 chr17 10532947 11865517 1332571 * c(LINC00675, MAGOH2P, TMEM220-AS1, DNAH9, TMEM220, SHISA6, MYH3, ADPRM, SCO1, PIRT) 0.381447638667538 9 0.076832610264132 0.693949635483221 782 0.278585347867486 1 1 0 -6.94934973687019 LTS-031 chr17 11865518 11872581 7064 * DNAH9 NA 0 NA 0.965 1 NA NA NA NA NA LTS-031 chr17 11872582 14063289 2190708 * c(MIR744, COX10-AS1, COX10, DNAH9, LINC00670, ELAC2, MAP2K4, ZNF18, MYOCD, CDRT15P1, ARHGAP44, HS3ST3A1) 0.412628376476981 10 0.0562510246820249 0.857075007244359 774 0.350941333162702 2 1 1 -6.8633637158579 LTS-031 chr17 14063290 14249040 185751 * c(COX10, CDRT15, MGC12916, HS3ST3B1) 0.443 1 NA 0.531556822020417 192 0.267268397234986 0 0 0 -5.82446835630228 LTS-031 chr17 14249041 14249147 107 * HS3ST3B1 NA 0 NA 0.692 1 NA NA NA NA NA LTS-031 chr17 14249148 15406489 1157342 * c(TVP23C-CDRT4, MIR4731, TVP23C, CDRT4, PMP22, TEKT3, CDRT7, HS3ST3B1) 0.429940963389729 9 0.0425904266760083 0.800121833220392 312 0.571201591499304 2 1 1 -6.77500747703638 LTS-031 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.318 1 NA NA NA NA NA LTS-031 chr17 15440243 15643808 203566 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A) 0.355015062503095 14 0.0772144153255461 0.518826637763028 529 0.385934360525003 2 2 0 -6.968873296673 LTS-031 chr17 15643809 15643818 10 * TBC1D26 NA 0 NA 0.699 1 NA NA NA NA NA LTS-031 chr17 15643819 17714185 2070367 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, ADORA2B, SMCR5, NA, USP32P1, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, KRT16P2, MEIS3P1, TRPV2, RASD1, TTC19, MED9, NT5M, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, COPS3, PIGL, NCOR1, CCDC144A) 0.391882210663448 49 0.0788898202653333 0.87402940582708 2052 0.91481334506515 2 2 0 -6.78264260399846 LTS-031 chr17 17714186 17875558 161373 * c(RAI1, TOM1L2, SREBF1, MIR33B) 0.398937229711362 6 0.0621913713200366 1.28484824934288 274 0.718178057001359 4 3 1 -6.74092343097605 LTS-031 chr17 17875559 18315239 439681 * c(MIEF2, SMCR8, TOM1L2, DRG2, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A, GID4, DRC3, ATPAF2) 0.402369037113243 52 0.0650949648549878 0.858665403711099 1542 0.352979434200534 1 1 0 -6.79605092826422 LTS-031 chr17 18315240 18498144 182905 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.428464934129086 3 0.050921508225896 0.261830806512731 90 0.20874613514704 0 0 0 -8.32786702391611 LTS-031 chr17 18498145 18498409 265 * CCDC144B NA 0 NA 0.514 1 NA NA NA NA NA LTS-031 chr17 18498410 18710079 211670 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, ZNF286B) 0.39093077379372 13 0.0857242149316109 0.543045402569475 482 0.370670259716862 1 1 0 -6.89385806437362 LTS-031 chr17 18710080 18769081 59002 * PRPSAP2 NA 0 NA 0.925 1 NA NA NA NA NA LTS-031 chr17 18769082 18882875 113794 * c(SLC5A10, PRPSAP2, FAM83G) 0.415480893915921 16 0.047525256443285 0.687199682023575 264 0.277239670170019 1 1 0 -6.74342119116892 LTS-031 chr17 18882876 20254314 1371439 * c(MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, B9D1, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, FAM83G, SNORA59A, RNF112, SPECC1, ULK2) 0.39591247907107 26 0.070950730467319 0.892631652408861 1471 0.454037755358537 2 2 0 -6.81910328189811 LTS-031 chr17 20254315 20254601 287 * CCDC144CP NA 0 NA 0.411 1 NA NA NA NA NA LTS-031 chr17 20254602 20768839 514238 * c(LOC100287072, CDRT15L2, LGALS9B, CCDC144NL, CCDC144CP, KRT16P3) 0.294 1 NA 0.508065360211605 201 0.33860944415601 0 0 0 -5.91848203423282 LTS-031 chr17 20768840 20799137 30298 * CCDC144NL NA 0 NA 0.885 1 NA NA NA NA NA LTS-031 chr17 20799138 20924523 125386 * c(USP22, CCDC144NL) 0.445326314626057 10 0.0351645339005715 0.996462298659933 145 0.360617595643025 4 2 2 -6.76041195651714 LTS-031 chr17 20924524 20924620 97 * USP22 0.333 1 NA 1.06054847284562 3 0.245043533547273 4 4 0 -5.76441156903336 LTS-031 chr17 20924621 22066835 1142215 * c(MTRNR2L1, USP22, NATD1, DHRS7B, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3, TMEM11) 0.300283262139958 110 0.0664072035291891 0.831216031042332 552 0.405489689076644 3 3 0 -6.95349298058062 LTS-031 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.622 1 NA NA NA NA NA LTS-031 chr17 25620838 25887530 266693 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.378 1 NA 0.881934137950074 81 0.310454741637067 2 2 0 -5.76451687819518 LTS-031 chr17 25887531 27494082 1606552 * c(SPAG5-AS1, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, SEZ6, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, MYO18A, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, NA NA NA NA NA NA NA NA NA LTS-031 KIAA0100) 0.416046075385055 48 0.0608421360093841 0.887495397195207 3447 0.417258866573399 2 1 1 -6.81592558992679 LTS-031 NA NA NA NA LTS-031 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.346 1 NA NA NA NA NA LTS-031 chr17 27528620 27530504 1885 * character(0) 0.283 1 NA 0.300882177609183 42 0.10819410869726 0 0 0 -5.82058241598135 LTS-031 chr17 27530505 27573746 43242 * character(0) NA 0 NA 0.667 1 NA NA NA NA NA LTS-031 chr17 27573747 29863879 2290133 * c(MIR3184, MIR4523, MIR4724, MIR4733, ABHD15, ANKRD13B, CPD, CRYBA1, LRRC37BP1, EVI2A, EVI2B, TBC1D29, GIT1, EFCAB5, TMIGD1, SUZ12P1, NF1, MIR423, OMG, DPRXP4, CRLF3, ADAP2, NUFIP2, TAOK1, BLMH, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, TP53I13, GOSR1) 0.386352952378518 60 0.0608663071381267 0.795655850548073 2883 0.414549058463253 2 2 0 -6.85204418612845 LTS-031 chr17 29863880 30817570 953691 * c(MIR365B, MIR4725, LRRC37B, RHBDL3, SUZ12, MIR193A, ARGFXP2, RHOT1, COPRS, UTP6, PSMD11, C17orf75, SH3GL1P1, MIR632, ZNF207, RAB11FIP4, CDK5R1) 0 1 NA 0.844086518019134 1109 0.437113553328665 2 2 0 -5.768255361608 LTS-031 chr17 30817571 34433730 3616160 * c(AA06, SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MYO1D, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, CDK5R1, ZNF830, SLFN11, RASL10B) 0.314397327137277 39 0.099326503945145 0.815996049314155 2862 0.40144449321742 2 2 0 -6.97441282693644 LTS-031 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.106 1 NA NA NA NA NA LTS-031 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.326032444054955 43 0.46294872099664 0 NA NA -5.89646998106404 LTS-031 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.668 1 NA NA NA NA NA LTS-031 chr17 34842415 36205014 1362600 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.321827181615599 2 0.0254558441227157 0.959044334458069 1543 1.81440564948937 3 3 0 -6.76079120191983 LTS-031 chr17 36205015 36213920 8906 * YWHAEP7 NA 0 NA 0.562 1 NA NA NA NA NA LTS-031 chr17 36213921 36462656 248736 * c(YWHAEP7, LOC440434, MRPL45) 0.39436724026034 2 0.0240416305603426 0.454535679608986 106 0.308688404086726 1 1 0 -7.63411283762406 LTS-031 chr17 36462657 36474566 11910 * MRPL45 NA 0 NA 1.154 1 NA NA NA NA NA LTS-031 chr17 36474567 38519518 2044952 * c(LOC100131347, C17orf96, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, ZPBP2, GJD3, CSF3, WIPF2, ERBB2, CASC3, IKZF3, CISD3, GSDMA, GRB7, SOCS7, MSL1, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, THRA, PCGF2, CACNB1, SRCIN1, PIP4K2B, PPP1R1B, MIEN1, NA NA NA NA NA NA NA NA NA LTS-031 MRPL45, FBXL20, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.327487027166863 71 0.0715008969847072 1.06929002620681 4563 0.5057663124857 3 3 0 -6.76239794515541 LTS-031 NA NA NA NA LTS-031 chr17 38519519 38565004 45486 * c(GJD3, RARA, TOP2A) 0.373 1 NA 0.722293331248278 163 0.311367602785241 1 1 0 -5.76518311828408 LTS-031 chr17 38565005 38802072 237068 * c(CCR7, IGFBP4, RARA, SMARCE1, TOP2A, TNS4) 0.355814672121336 6 0.050780901921884 1.17324653324049 413 0.620717678961604 5 4 1 -6.73605588237412 LTS-031 chr17 38802073 38810904 8832 * SMARCE1 NA 0 NA 0.336 1 NA NA NA NA NA LTS-031 chr17 38810905 39216437 405533 * c(KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT39, KRT20, KRTAP1-4, KRTAP2-2, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP3-3) 0.338618852437999 13 0.0882436167517849 0.800312458797388 922 0.36431010158509 2 2 0 -6.81831086066318 LTS-031 chr17 39216438 39221347 4910 * character(0) NA 0 NA 0.553 1 NA NA NA NA NA LTS-031 chr17 39221348 39458824 237477 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP9-6, KRTAP29-1, KRTAP4-11, KRTAP4-8, KRTAP9-1, KRTAP9-9, KRTAP4-6, KRTAP4-12, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP2-4) 0.340025650984183 30 0.102680315184736 0.611113330380205 363 0.348048155148187 2 2 0 -6.92850479512118 LTS-031 chr17 39458825 39458893 69 * KRTAP29-1 0.388 1 NA 1.206 1 NA NA NA NA NA LTS-031 chr17 39458894 40105517 646624 * c(KRTAP16-1, LOC100505782, KRTAP29-1, EIF1, P3H4, NT5C3B, LINC00974, GAST, KRT42P, KLHL10, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, ACLY, KLHL11, FKBP10, TTC25, KRTAP17-1, KRT38, KRT37, KRT36, HAP1) 0.31704683231439 52 0.0717622683054114 1.00103960506698 1671 0.440573655902246 3 3 0 -6.7455468558086 LTS-031 chr17 40105518 40106892 1375 * TTC25 NA 0 NA 1.406 1 NA NA NA NA NA LTS-031 chr17 40106893 40991425 884533 * c(RAMP2-AS1, MIR5010, PSME3, RAMP2, CNTD1, CNP, FAM134C, ZNF385C, EZH1, KCNH4, KAT2A, TUBG2, CCR10, PTRF, NKIRAS2, COA3, PSMC3IP, HCRT, HSD17B1, NAGLU, ATP6V0A1, RAB5C, WNK4, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, VPS25, GHDC, CNTNAP1, BECN1, HSPB9) 0.336833455056433 27 0.0582659195320676 1.16474442162355 2377 0.477917191389431 6 5 1 -6.78497593196653 LTS-031 chr17 40991426 40993409 1984 * PSME3 NA 0 NA 0.769 1 NA NA NA NA NA LTS-031 chr17 40993410 43903016 2909607 * c(LINC00910, MAP3K14-AS1, HDAC5, MIR2117, GJC1, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, VAT1, HEXIM1, C1QL1, RUNDC3A, PLCD3, TMEM106A, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, RUNDC1, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, G6PC, GFAP, C17orf105, FAM171A2, MEIOC, GRN, AOC2, ASB16-AS1, IFI35, ITGA2B, ARL4D, LINC00671, CCDC103, NBR1, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, NA NA NA NA NA NA NA NA NA LTS-031 HIGD1B, PPY, PYY, ATXN7L3, RPL27, SLC4A1, BRCA1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, AARSD1, RND2, TMEM101, AOC3, MAP3K14, AOC4P, G6PC3, ASB16, EFTUD2) 0.354869850701608 78 0.0692990738636646 1.03770372986399 4711 0.590008208803539 3 3 0 -6.83832053853257 LTS-031 NA NA NA NA LTS-031 chr17 43903017 43906523 3507 * character(0) NA 0 NA 0.573 1 NA NA NA NA NA LTS-031 chr17 43906524 44061190 154667 * character(0) 0.278 1 NA 0.637472664059826 133 0.246772016707051 0 0 0 -5.76477539682789 LTS-031 chr17 44061191 46136982 2075792 * c(MIR5089, OSBPL7, EFCAB13, MRPL10, TBX21, ITGB3, KPNB1, RPRML, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.357428726493841 61 0.108062557777625 1.04367689013513 2133 0.491349628695284 3 3 0 -6.79444402209827 LTS-031 chr17 46136983 46147391 10409 * NFE2L1 NA 0 NA 0.574 1 NA NA NA NA NA LTS-031 chr17 46147392 47588003 1440612 * c(MIR1203, MIR3185, HOXB-AS1, CALCOCO2, HOXB13, IGF2BP1, CBX1, SNF8, FLJ40194, B4GALNT2, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, SNX11, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, HOXB-AS3, MIR10A, MIR196A1, NGFR, ABI3, ATP5G1, PHB, UBE2Z, PRAC1, SKAP1) 0.315074463219571 40 0.0654680192037421 0.876892409044915 1938 0.562897826888421 3 3 0 -6.79283941883752 LTS-031 chr17 47588004 49269667 1681664 * c(TOB1, SLC35B1, CHAD, KAT7, NXPH3, WFIKKN2, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, CACNA1G-AS1, TAC4, LOC284080, ITGA3, HILS1, TOB1-AS1, NGFR, NME1, NME2, MRPL27, PDK2, LUC7L3, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.348318242033866 60 0.087732701064986 1.14210246430648 3641 0.560851301759738 5 4 1 -6.75473704815155 LTS-031 chr17 49269668 49270109 442 * MBTD1 NA 0 NA 0.537 1 NA NA NA NA NA LTS-031 chr17 49270110 54969627 5699518 * c(TOM1L1, MIR3614, C17orf112, COX11, ANKFN1, MMD, MTVR2, STXBP4, HLF, C17orf67, UTP18, MBTD1, TMEM100, CA10, PCTP, TRIM25, KIF2B, DGKE, NOG) 0.327378517322526 23 0.0991250258561789 0.847389740315571 987 0.426709920881538 2 2 0 -6.85659559676201 LTS-031 chr17 54969628 54972724 3097 * TRIM25 NA 0 NA 1.132 1 NA NA NA NA NA LTS-031 chr17 54972725 56164584 1191860 * c(MSI2, DYNLL2, RNF126P1, CUEDC1, MRPS23, SCPEP1, SRSF1, TRIM25, VEZF1, COIL, AKAP1) 0.395213858185592 7 0.102295091349906 1.19356906004606 537 0.483001452838059 4 3 1 -6.75239757972519 LTS-031 chr17 56164585 58176778 2012194 * c(TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, CLTC, HSF5, OR4D2, DYNLL2, PPM1E, OR4D1, C17orf47, GDPD1, SKA2, YPEL2, LPO, MIR142, MIR21, MIR301A, MPO, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, RNF43, MKS1, SMG8, MSX2P1, PRR11, TEX14, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, SUPT4H1, MIR454, DHX40, VMP1, EPX, MTMR4, TSPOAP1) 0.315562359789687 34 0.0929299134063091 0.904893837617646 2498 0.466521389658802 3 3 0 -6.78570935290267 LTS-031 chr17 58176779 58177074 296 * character(0) NA 0 NA 0.273 1 NA NA NA NA NA LTS-031 chr17 58177075 58179418 2344 * LOC653653 0.295 1 NA 0.385616477976787 56 0.249796093467629 0 0 0 -5.77045277371494 LTS-031 chr17 58179419 58179474 56 * LOC653653 NA 0 NA 0.643 1 NA NA NA NA NA LTS-031 chr17 58179475 60315478 2136004 * c(APPBP2, C17orf64, NACA2, C17orf82, BCAS3, INTS2, LOC653653, SCARNA20, TBX2, CA4, BRIP1, USP32, PPM1D, TBX4, MED13) 0.323382286065436 12 0.0679904182197534 0.863340211431694 1145 0.3773037848906 3 3 0 -6.89592975234278 LTS-031 chr17 60315479 60316405 927 * character(0) NA 0 NA 0.6 1 NA NA NA NA NA LTS-031 chr17 60316406 60530718 214313 * c(EFCAB3, METTL2A, TBC1D3P2) 0.307386424919321 7 0.0824133022087598 0.612865979943254 210 0.351184723702168 3 3 0 -6.99722637312157 LTS-031 chr17 60530719 60558420 27702 * TLK2 NA 0 NA 1.192 1 NA NA NA NA NA LTS-031 chr17 60558421 61916049 1357629 * c(DCAF7, TLK2, DDX42, FTSJ3, CYB561, MARCH10, ACE, TANC2, MAP3K3, TACO1, CCDC47, PSMC5, SMARCD2, LOC729683, LIMD2, KCNH6, STRADA, MRC2) 0.362003932270913 36 0.0634607990484915 1.04862011583782 1427 0.422874410351702 5 4 1 -6.83264193362576 LTS-031 chr17 61916050 61949389 33340 * c(CSH2, TCAM1P, SMARCD2) NA 0 NA 0.761 1 NA NA NA NA NA LTS-031 chr17 61949390 62023023 73634 * c(CSH1, CSH2, CSHL1, GH1, GH2, SCN4A, CD79B) 0.332050857596816 9 0.0352506895125629 0.725491151351815 234 0.320598774496373 3 3 0 -6.78482712604514 LTS-031 chr17 62023024 62024304 1281 * SCN4A NA 0 NA 1.497 1 NA NA NA NA NA LTS-031 chr17 62024305 62746093 721789 * c(MIR3064, MIR5047, POLG2, LOC146880, DDX5, ERN1, MILR1, ICAM2, PECAM1, TEX2, SCN4A, SMURF2, SNORA50C, SNORD104, CEP95, PRR29) 0.399797252258743 6 0.0585787219617044 1.08978466133464 765 0.446589810068904 4 3 1 -6.73880545212386 LTS-031 chr17 62746094 62750075 3982 * LOC146880 NA 0 NA 0.659 1 NA NA NA NA NA LTS-031 chr17 62750076 66366671 3616596 * c(SNORA38B, LINC00674, GNA13, LOC146880, CEP112, AMZ2P1, BPTF, ARSG, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PRKCA, PSMD12, MIR634, CACNG1, AXIN2, RGS9, SLC16A6, HELZ) 0.323321460271013 17 0.0861092841889271 0.923431615124393 1788 0.432071419621242 3 3 0 -6.78791910592579 LTS-031 chr17 66366672 66381097 14426 * ARSG NA 0 NA 1.577 1 NA NA NA NA NA LTS-031 chr17 66381098 71410972 5029875 * c(LINC00673, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, SLC39A11, ARSG, ABCA6, ABCA5, CDC42EP4, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, SDK2, FAM20A, C17orf80, WIPI1, PRKAR1A, MAP2K6, CPSF4L, SOX9, SSTR2, MIR635, FAM104A, COG1) 0.324789579556711 43 0.0578318963825557 1.08507604766145 2050 0.475298871323616 3 3 0 -6.84773890128996 LTS-031 chr17 71410973 71411936 964 * SDK2 NA 0 NA 0.725 1 NA NA NA NA NA LTS-031 chr17 71411937 72741653 1329717 * c(CD300LD, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, LINC00469, RAB37, CD300E, GPR142, BTBD17, LOC400620, SDK2, GPRC5C, RPL38, DNAI2, MGC16275, TTYH2) 0.325351805495229 33 0.0873055414951283 0.797116562930247 1194 0.449553284685891 3 3 0 -6.91098077026425 LTS-031 chr17 72741654 72741727 74 * RAB37 NA 0 NA 1.533 1 NA NA NA NA NA LTS-031 chr17 72741728 80363378 7621651 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, NA NA NA NA NA NA NA NA NA LTS-031 SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, OTOP3, MCRIP1, ZACN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.329054490870041 305 0.0625276284058803 1.08016887996034 12804 0.49612602416586 3 3 0 -6.87577661750579 LTS-031 NA NA NA NA LTS-031 chr17 80363379 80386556 23178 * c(HEXDC, OGFOD3) NA 0 NA 3.03764193034649 39 1.9884491702239 20 NA NA -5.76441542039377 LTS-031 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.676 1 NA NA NA NA NA LTS-031 chr17 80391535 81042978 651444 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.332730850847948 28 0.0438470616440237 1.22533867211188 894 0.530236676716717 6 5 1 -6.74715438803336 LTS-031 chr17 81042979 81083625 40647 * METRNL NA 0 NA 1.0392619082105 25 0.330024150631435 3 NA NA -5.76496873299561 LTS-031 chr18 116845 121959 5115 * ROCK1P1 NA 0 NA 0.386894486300719 48 0.177769662058032 0 NA NA -5.79003656068447 LTS-031 chr18 121960 346821 224862 * c(ROCK1P1, COLEC12, USP14, THOC1) 0.485 1 NA 0.969801279111957 213 0.350521156733937 3 3 0 -5.76481597548926 LTS-031 chr18 346822 2616706 2269885 * c(NDC80, CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, LINC00470, METTL4, TYMS, YES1, COLEC12) 0.426654027042231 18 0.0481213403667521 0.755726817167372 647 0.343849917665015 1 1 0 -6.75506788746484 LTS-031 chr18 2616707 2656052 39346 * c(SMCHD1, CBX3P2) NA 0 NA 1.419 1 NA NA NA NA NA LTS-031 chr18 2656053 9959329 7303277 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, MYL12B, MYL12A, RALBP1, RAB31, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, TGIF1, LOC727896, ZBTB14, ARHGAP28, EMILIN2, TXNDC2, MYOM1, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.419322337971744 98 0.0798913790259487 0.969794776198443 3501 0.504236898898197 3 2 1 -6.74709348909417 LTS-031 chr18 9959330 10548489 589160 * c(APCDD1, NAPG, VAPA) 0.428293690496391 12 0.0477131580860611 1.50677174374595 131 0.655171197880373 7 4 3 -6.74922125215177 LTS-031 chr18 10548490 10548908 419 * NAPG NA 0 NA 0.763 1 NA NA NA NA NA LTS-031 chr18 10548909 13671979 3123071 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, NAPG) 0.4249831281746 57 0.0945456089961407 0.894153695681988 1866 0.618996521299761 2 1 1 -6.7478777986431 LTS-031 chr18 13671980 13681665 9686 * FAM210A NA 0 NA 0.623 1 NA NA NA NA NA LTS-031 chr18 13681666 15004191 1322526 * c(MIR3156-2, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.402978399343437 22 0.0745928051496026 0.723996068238032 431 0.491737853494777 1 1 0 -6.76401619073921 LTS-031 chr18 15004192 15006193 2002 * character(0) NA 0 NA 0.98557899120994 27 0.415767809955114 3 NA NA -5.76441020084876 LTS-031 chr18 18529727 18529837 111 * ROCK1 0.481 1 NA 0.411373453728442 3 0.18276852391299 0 0 0 -5.76481643917112 LTS-031 chr18 18529838 18535138 5301 * ROCK1 NA 0 NA 0.362489078067214 50 0.178833521945491 0 NA NA -5.79767413536518 LTS-031 chr18 18535139 28709748 10174610 * c(CDH2, GATA6-AS1, MIR302F, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, AQP4-AS1, ANKRD29, ABHD3, DSC1, DSC2, DSC3, ZNF521, CABYR, GATA6, KCTD1, C18orf8, AQP4, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, TAF4B, PCAT18, LOC729950, GREB1L, CHST9, TMEM241, RIOK3, CABLES1) 0.420929429821914 49 0.0674543055210958 0.932477079372717 3553 0.463025891911401 3 2 1 -6.83614107397895 LTS-031 chr18 28709749 29111242 401494 * c(DSG4, DSC1, DSG1, DSG2, DSG3) 0.450112274507748 10 0.0514803090727146 0.674138120938185 545 0.298540021744336 0 0 0 -6.76674745364528 LTS-031 chr18 29111243 29115156 3914 * DSG2 NA 0 NA 1.059 1 NA NA NA NA NA LTS-031 chr18 29115157 32446353 3331197 * c(DSG2-AS1, SLC25A52, DSG2, DTNA, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, ASXL3, NOL4, B4GALT6) 0.42947659868891 16 0.115755615414545 0.84922513151791 1495 0.418107235859343 2 1 1 -6.74692254480818 LTS-031 chr18 32446354 39567869 7121516 * c(ZSCAN30, MIR4318, MIR3975, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, TPGS2, MIR187, PIK3C3, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KC6, MIR924HG, ZNF24, FHOD3, C18orf21, ZNF397) 0.426799848760511 41 0.0826398740348012 1.03111963044399 1756 0.800506986353093 3 2 1 -6.74503422696659 LTS-031 chr18 39567870 39570418 2549 * PIK3C3 NA 0 NA 0.817 1 NA NA NA NA NA LTS-031 chr18 39570419 45158000 5587582 * c(MIR4319, TCEB3CL2, HAUS1, LOXHD1, C18orf25, TCEB3C, SETBP1, LINC00907, SIGLEC15, ST8SIA5, RNF165, ATP5A1, IER3IP1, TCEB3B, PIK3C3, EPG5, RIT2, SKOR2, SLC14A1, SYT4, SLC14A2, KATNAL2, HDHD2, PSTPIP2, PIAS2) 0.448790495347873 38 0.0378699203552082 0.864220864576047 2323 0.404194550150374 2 1 1 -6.77875073066615 LTS-031 chr18 45158001 45357895 199895 * character(0) NA 0 NA 1.102 1 NA NA NA NA NA LTS-031 chr18 45357896 48701973 3344078 * c(SNORD58C, MIR1539, MIR4320, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, SKA1, CFAP53, SNORD58B, SNORD58A, CXXC1, SMAD2, SMAD4, SMAD7, MBD1, ME2, MYO5B, C18orf32, MEX3C, DYM, ELAC1, MAPK4, RPL17, SCARNA17, MRO, LIPG, CTIF) 0.433218066370019 34 0.0562709972693735 0.996721588408052 1920 0.459347011009265 3 2 1 -6.73810104929215 LTS-031 chr18 48701974 52895626 4193653 * c(LINC01630, POLI, STARD6, C18orf54, DCC, DYNAP, MEX3C, RAB27B, SNORA37, TCF4, CCDC68, MBD2) 0.411944657699082 20 0.0730589343936581 0.743089614100145 959 0.353016580726819 1 1 0 -6.74817324453739 LTS-031 chr18 52895627 52896091 465 * TCF4 NA 0 NA 1.243 1 NA NA NA NA NA LTS-031 chr18 52896092 54348625 1452534 * c(LINC01539, MIR4529, WDR7, TCF4, TXNL1) NA 0 NA 1.121657186951 307 0.50900875301609 4 NA NA -5.76542275551217 LTS-031 chr18 54348626 54349874 1249 * WDR7 NA 0 NA 0.526 1 NA NA NA NA NA LTS-031 chr18 54349875 61271839 6921965 * c(LOC100505549, MIR3591, LINC-ROR, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ST8SIA3, ATP8B1, SERPINB5, SERPINB13, PMAIP1, ZCCHC2, ZNF532, KIAA1468, BCL2, TNFRSF11A, SERPINB12, SEC11C, ONECUT2, VPS4B) 0.440111756222118 134 0.0645180474160106 0.864452472678358 3806 0.692062053855131 2 1 1 -6.73458250976936 LTS-031 chr18 61271840 61304514 32675 * SERPINB4 NA 0 NA 0.244 1 NA NA NA NA NA LTS-031 chr18 61304515 61323392 18878 * c(SERPINB3, SERPINB4) 0.488 1 NA 0.330412680125034 70 0.18134303652032 0 0 0 -5.91633178750894 LTS-031 chr18 61323393 61324141 749 * c(SERPINB3, SERPINB4) NA 0 NA 0.793 1 NA NA NA NA NA LTS-031 chr18 61324142 64748929 3424788 * c(CDH7, MIR5011, LINC00305, HMSD, LOC284294, CDH19, LINC01538, SERPINB2, SERPINB8, SERPINB10, SERPINB3, SERPINB4, SERPINB7, SERPINB11) 0.42486047798021 21 0.0724680225045108 0.660370167083769 705 0.592070862200786 0 0 0 -6.75715717875295 LTS-031 chr18 64748930 72776215 8027286 * c(LINC01541, LOC100505817, CD226, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, RTTN, TIMM21, LOC400655, LINC00909, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, CCDC102B, NETO1, CNDP1, DSEL, SOCS6) 0.435195847053911 16 0.0675266614012569 0.842980965375352 1614 0.411386232047234 2 1 1 -6.77363975873302 LTS-031 chr18 72776216 74817302 2041087 * c(LOC100131655, TSHZ1, ZADH2, SMIM21, LINC00908, LOC339298, C18orf65, MBP, ZNF407, ZNF236, ZNF516) 0.452915387370852 22 0.0327655980501564 1.07060075774407 954 0.538161817451233 4 2 2 -6.84811896989748 LTS-031 chr18 74817303 74962517 145215 * c(GALR1, MBP) NA 0 NA 0.574 1 NA NA NA NA NA LTS-031 chr18 74962518 76757395 1794878 * c(GALR1, SALL3) NA 0 NA 0.612338313091319 113 0.337081501312636 0 NA NA -5.79368159425465 LTS-031 chr18 76757396 76829330 71935 * SALL3 NA 0 NA 1.105 1 NA NA NA NA NA LTS-031 chr18 76829331 77478011 648681 * c(ATP9B, NFATC1, CTDP1) 0.441384470946477 14 0.0387043598645872 0.98315710805551 372 0.430260351005722 4 2 2 -6.76341107969169 LTS-031 chr18 77478012 78005362 527351 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, HSBP1L1, RBFA, PQLC1, PARD6G, CTDP1) NA 0 NA 0.967781511198513 507 0.392779252573891 3 NA NA -5.7653413707772 LTS-031 chr19 107416 336102 228687 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.443 1 NA 0.837294085668609 101 0.473734685742186 2 2 0 -5.76558944888277 LTS-031 chr19 336103 436434 100332 * c(C2CD4C, SHC2, THEG, MIER2) 0.388981479102699 6 0.0560666270312979 0.753036480052961 129 0.272556581050671 2 2 0 -6.82569346035203 LTS-031 chr19 436435 436499 65 * SHC2 NA 0 NA 0.912 1 NA NA NA NA NA LTS-031 chr19 436500 1465333 1028834 * c(MED16, MIR3187, MIR4745, FSTL3, APC2, ABCA7, CIRBP, GRIN3B, MISP, CNN2, CIRBP-AS1, C19orf25, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, NDUFS7, PRSS57, PALM, ATP5D, POLR2E, POLRMT, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, RPS15, STK11, BSG, PLPPR3, MADCAM1, KISS1R, MUM1, MIDN, R3HDM4, TMEM259, TPGS1, CDC34) 0.392239349818548 88 0.0570569833317312 1.01829671570559 2566 0.473421178692195 4 3 1 -6.75101251716225 LTS-031 chr19 1465334 1468687 3354 * c(APC2, C19orf25) NA 0 NA 0.542471698021695 74 0.244995494446629 0 NA NA -5.76545832848147 LTS-031 chr19 1468688 6456158 4987471 * c(LOC100128568, C19orf71, DPP9-AS1, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, MIR3940, MIR4747, MIR4746, EBI3, PLIN3, APC2, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, PLK5, CSNK1G2, TICAM1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, KDM4B, ZFR2, PIP5K1C, FUT3, NA NA NA NA NA NA NA NA NA LTS-031 FUT5, FUT6, CSNK1G2-AS1, TINCR, CATSPERD, RPL36, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MKNK2, UHRF1, GTF2F1, SLC39A3, ADAMTSL5, TMPRSS9, C19orf35, HSD11B1L, ONECUT3, MEX3D, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, PCSK4, PLEKHJ1, FEM1A, STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, PSPN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 NCLN, SPPL2B, DUS3L, SHD, REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, SLC25A23, FSD1, TLE6, ZNF556, UBXN6, ACSBG2, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, KHSRP, S1PR4, AP3D1, DPP9, REEP6, LONP1, APBA3, SAFB2) 0.393791829932283 220 0.0574622737969977 0.914883485215192 8335 0.458532017309031 2 2 0 -6.87009481209164 LTS-031 NA NA NA NA LTS-031 chr19 6456159 6456400 242 * SLC25A23 NA 0 NA 0.512 1 NA NA NA NA NA LTS-031 chr19 6456401 6714462 258062 * c(TUBB4A, C3, SLC25A23, DENND1C, TNFSF14, TNFSF9, CRB3, CD70) 0.380021595039147 8 0.0304806730334392 0.688577230588269 431 0.28699777051876 2 2 0 -6.91495504016028 LTS-031 chr19 6714463 6718091 3629 * C3 NA 0 NA 1.394 1 NA NA NA NA NA LTS-031 chr19 6718092 6825502 107411 * c(SH2D3A, GPR108, C3, VAV1, TRIP10) 0.376951736302979 5 0.0688658115468045 1.02168962147819 272 0.468491762541038 2 2 0 -6.74786926310117 LTS-031 chr19 6825503 6826516 1014 * VAV1 NA 0 NA 0.481 1 NA NA NA NA NA LTS-031 chr19 6826517 7011873 185357 * c(ADGRE1, ADGRE4P, FLJ25758, VAV1) 0.374219630755264 20 0.0650024088622471 0.628888059874016 324 0.282955765276819 2 2 0 -6.8844501885372 LTS-031 chr19 7011874 8670623 1658750 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, MBD3L5, CD209, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, NA NA NA NA NA NA NA NA NA LTS-031 FBN3, RAB11B, PEX11G) 0.375606686196553 71 0.0701765723574975 0.915884072002917 2933 0.414931179232293 2 2 0 -6.75027481501702 LTS-031 NA NA NA NA LTS-031 chr19 8670624 8807732 137109 * ADAMTS10 NA 0 NA 0.659 1 NA NA NA NA NA LTS-031 chr19 8807733 9362408 554676 * c(OR7D4, OR7G1, OR1M1, ZNF558, OR7D2, OR7E24, ACTL9, OR2Z1, OR7G2, OR7G3, ZNF317, MBD3L1, MUC16) 0.384112598669678 46 0.0945849335879439 0.595405721608108 1483 0.289508406082323 0 0 0 -6.95427781878007 LTS-031 chr19 9362409 9362642 234 * OR7E24 NA 0 NA 0.853 1 NA NA NA NA NA LTS-031 chr19 9362643 10200810 838168 * c(ZNF559-ZNF177, ZNF266, ZNF560, ZNF846, OR7E24, ZNF561-AS1, ZNF699, C3P1, COL5A3, RDH8, PIN1, ZNF562, FBXL12, C19orf66, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.422751171938143 9 0.0856227189477185 0.74258028416146 1124 0.464631493864792 1 1 0 -6.73667338645533 LTS-031 chr19 10200811 10201916 1106 * C19orf66 NA 0 NA 2.471 1 NA NA NA NA NA LTS-031 chr19 10201917 10407169 205253 * c(SNORD105B, MIR4322, DNMT1, ICAM1, ICAM4, P2RY11, MRPL4, C19orf66, PPAN, SNORD105, PPAN-P2RY11, ICAM5, ANGPTL6, EIF3G, S1PR2) 0.382571942000552 10 0.0533870562756346 0.890673598592401 666 0.399558792618601 2 2 0 -6.77122366656345 LTS-031 chr19 10407170 10419130 11961 * c(ZGLP1, FDX1L, ICAM5) 0.415 1 NA 0.865157381633906 35 0.950740483637302 2 2 0 -5.76441112827382 LTS-031 chr19 10419131 11665217 1246087 * c(ZGLP1, MIR1181, MIR1238, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, DNM2, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM3, ILF3, TMEM205, LDLR, MIR199A1, ECSIT, PDE4A, S1PR5, PRKCSH, ANGPTL8, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, MIR638, TYK2, YIPF2, QTRT1, ELOF1, ATG4D, C19orf52, RAB3D, KEAP1) 0.429725406986368 52 0.0530480124883042 0.967560671212317 2920 0.459600285689285 3 2 1 -6.73505933893658 LTS-031 chr19 11665218 11685840 20623 * c(ACP5, ELOF1) NA 0 NA 0.473 1 NA NA NA NA NA LTS-031 chr19 11685841 12740347 1054507 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.415365054441652 39 0.083256477379487 0.686771654739923 1756 0.5131789194639 1 1 0 -6.75873845981571 LTS-031 chr19 12740348 12740567 220 * ZNF791 NA 0 NA 0.945 1 NA NA NA NA NA LTS-031 chr19 12740568 14682914 1942347 * c(LOC100507373, DDX39A, RNASEH2A, KLF1, GIPC1, NACC1, MISP3, RLN3, ZNF791, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, SYCE2, GCDH, SNORD41, LOC284454, C19orf53, HOOK2, TNPO2, DNAJB1, NANOS3, PALM3, JUNB, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, WDR83OS, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, MIR639, PRDX2, CACNA1A, C19orf43, C19orf57, PODNL1, NA NA NA NA NA NA NA NA NA LTS-031 CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, SAMD1, DCAF15, GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.442977991059121 59 0.0476339110281358 0.947908758150764 3473 0.482065762608341 2 1 1 -6.77000809383311 LTS-031 NA NA NA NA LTS-031 chr19 14682915 14693832 10918 * character(0) NA 0 NA 0.765 1 NA NA NA NA NA LTS-031 chr19 14693833 15226147 532315 * c(ILVBL, OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.440792393153853 17 0.0530400098704631 0.742253816605309 717 0.364691621060522 0 0 0 -6.77849717058048 LTS-031 chr19 15226148 15549451 323304 * c(AKAP8, ILVBL, BRD4, AKAP8L, NOTCH3, WIZ, EPHX3) 0.443783409227777 7 0.0803071484691001 1.1581724012427 697 0.47783355081279 4 2 2 -6.73754249707195 LTS-031 chr19 15549452 16146800 597349 * c(MIR1470, CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, WIZ, RASAL3, UCA1, CYP4F12, CYP4F2) 0.441652007127353 31 0.0441261388411932 0.811317170890537 761 0.385935863751381 2 1 1 -6.74945070158779 LTS-031 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 3.106 1 NA NA NA NA NA LTS-031 chr19 16178447 19260292 3081846 * c(TMEM221, MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, KLF2, IFI30, CHERP, CERS1, COPE, CCDC124, NXNL1, CIB3, CALR3, LRRC25, ANKLE1, COMP, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, GDF1, SNORA68, ARRDC2, CPAMD8, NWD1, SLC25A42, BABAM1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, BORCS8-MEF2B, RAB8A, MYO9B, PDE4C, ISYNA1, PIK3R2, DDX49, PGPEP1, TMEM161A, NA NA NA NA NA NA NA NA NA LTS-031 C19orf60, MAP1S, KLHL26, USE1, ANO8, EPS15L1, RAB3A, UPF1, RPL18A, MRPL34, SLC5A5, BST2, TPM4, LOC729966, UBA52, DDA1, KXD1, TMEM38A, SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, GTPBP3, MPV17L2, HSH2D, AP1M1, F2RL3, CRLF1, HAUS8, MVB12A, ARMC6, MED26, HOMER3, GDF15) 0.45554000664927 143 0.0361271134279105 1.11893896426689 5902 0.508093742502648 4 2 2 -6.86283522494482 LTS-031 NA NA NA NA LTS-031 chr19 19260293 19261448 1156 * c(MEF2B, BORCS8-MEF2B) NA 0 NA 0.663 1 NA NA NA NA NA LTS-031 chr19 19261449 23869823 4608375 * c(ZNF730, ZNF737, MEF2B, ZNF729, MIR1270, ZNF257, NR2C2AP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, MAU2, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, LINC00664, HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, TM6SF2, GATAD2A, ZNF253, ATP13A1, ZNF492, SUGP1, LOC641367, ZNF826P, BORCS8, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, PBX4, NA NA NA NA NA NA NA NA NA LTS-031 ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ZNF101) 0.439850580596825 32 0.0534595019315949 0.99876816881952 2614 0.48590421302176 3 2 1 -6.76176416134393 LTS-031 NA NA NA NA LTS-031 chr19 23869824 24345121 475298 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 0.991748711367615 255 0.612931221274686 3 NA NA -5.76441768217466 LTS-031 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.479 1 NA 0.746325492122114 5 0.329386095638538 1 1 0 -5.76723357368139 LTS-031 chr19 29567135 35843368 6276234 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, LOC284395, SCGB2B2, FFAR1, HPN, ZNF181, VSTM2B, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, UQCRFS1, USF2, KCTD15, PLEKHF1, CEBPA-AS1, NA NA NA NA NA NA NA NA NA LTS-031 C19orf12, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.431451586050939 68 0.053002648317885 0.979617882522385 3543 0.501383787973535 3 2 1 -6.7363040286862 LTS-031 NA NA NA NA LTS-031 chr19 35843369 35898976 55608 * c(LINC01531, FFAR3) 0.31959557094282 5 0.0947538917406562 0.676485364902386 108 0.476437153278978 3 3 0 -6.75807022929068 LTS-031 chr19 35898977 35899290 314 * LINC01531 NA 0 NA 0.857 1 NA NA NA NA NA LTS-031 chr19 35899291 37642420 1743130 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF567, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, NA NA NA NA NA NA NA NA NA LTS-031 OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, DMKN, KMT2B) 0.451715182423957 76 0.0399496239799619 0.988198239093874 3534 0.446950309115566 4 2 2 -6.85836560088869 LTS-031 NA NA NA NA LTS-031 chr19 37642421 37677877 35457 * c(ZNF585A, ZNF585B) 0.429607154015533 2 0.0148492424049175 0.562513954262149 108 0.221342535645191 3 2 1 -6.87214214435802 LTS-031 chr19 37677878 38315830 637953 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, ZNF527, ZNF607, ZNF585B) 0.462680896845915 18 0.0282842712474619 0.941256607134691 761 0.363343323060837 2 1 1 -7.15274437212519 LTS-031 chr19 38315831 38375471 59641 * c(LOC100631378, LOC644554) NA 0 NA 0.739 1 NA NA NA NA NA LTS-031 chr19 38375472 38388988 13517 * WDR87 0.446537672903701 8 0.0621059003408119 0.670122488961567 201 0.187156457016543 0 0 0 -6.74282553966634 LTS-031 chr19 38388989 38571874 182886 * c(SIPA1L3, WDR87) NA 0 NA 1.964 1 NA NA NA NA NA LTS-031 chr19 38571875 40384193 1812319 * c(LOC100129935, MIR4530, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, FBL, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, NA NA NA NA NA NA NA NA NA LTS-031 LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.442185369460617 66 0.0513216489895995 1.01198086362576 3767 0.516274234801938 4 2 2 -6.76556738953077 LTS-031 NA NA NA NA LTS-031 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.509 1 NA NA NA NA NA LTS-031 chr19 40389650 40406019 16370 * FCGBP 0.28974805658035 4 0.0902034736951226 0.377025082294037 40 0.33317407477558 4 4 0 -6.83429968131878 LTS-031 chr19 40406020 40406033 14 * FCGBP NA 0 NA 1.512 1 NA NA NA NA NA LTS-031 chr19 40406034 40698277 292244 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.436410239301884 10 0.0461674488501729 0.75558450409247 554 0.428405842299536 2 1 1 -6.75491910838539 LTS-031 chr19 40698278 40904655 206378 * c(C19orf47, HIPK4, TTC9B, AKT2, PLD3, MAP3K10, PRX, MIR641, CNTD2) 0.460092548891978 4 0.0303479818109871 0.951401031577976 568 0.384098159882139 2 1 1 -7.02417805825308 LTS-031 chr19 40904656 41243079 338424 * c(SERTAD3, SERTAD1, PRX, SPTBN4, BLVRB, COQ8B, ITPKC, LTBP4, NUMBL, SHKBP1) 0.462455128216182 7 0.0332286451295092 1.31847409760638 786 0.53891212846599 6 3 3 -7.02599003057092 LTS-031 chr19 41243080 41243558 479 * ITPKC NA 0 NA 1.084 1 NA NA NA NA NA LTS-031 chr19 41243559 41962394 718836 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, C19orf54, CYP2S1, B3GNT8, RAB4B, ATP5SL, AXL, EXOSC5, BCKDHA, TMEM91, SNRPA, TGFB1, ITPKC, B9D2, MIA, CCDC97) 0.433968985998334 35 0.0850195726353199 1.0452892926373 1186 0.481792601051815 4 2 2 -6.7401022823008 LTS-031 chr19 41962395 42026804 64410 * PCAT19 NA 0 NA 0.514 1 NA NA NA NA NA LTS-031 chr19 42026805 42352600 325796 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, DMRTC2, CEACAM21) 0.456217392077366 13 0.0367636247201511 0.639107208228693 351 0.252464719795766 0 0 0 -6.86664304685037 LTS-031 chr19 42352601 42352860 260 * DMRTC2 NA 0 NA 1.53 1 NA NA NA NA NA LTS-031 chr19 42352861 43012187 659327 * c(MIR4323, LOC100505622, LIPE-AS1, RABAC1, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, CXCL17, GRIK5, GSK3A, LIPE, ATP1A3, PAFAH1B3, POU2F2, RPS19, CEACAM1, DMRTC2, ZNF574, CNFN, ARHGEF1, CD79A) 0.472766782702463 6 0.0241991735396067 1.02675148306585 1678 0.589282174766815 4 2 2 -7.7423913646833 LTS-031 chr19 43012188 43922494 910307 * c(LOC100289650, LIPE-AS1, CEACAM8, PRG1, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P, TEX101) 0.409830045750124 22 0.0689802813909832 0.607213481015432 396 0.48283569081841 0 0 0 -6.8460002258064 LTS-031 chr19 43922495 43922498 4 * TEX101 NA 0 NA 0.932 1 NA NA NA NA NA LTS-031 chr19 43922499 44174288 251790 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, LYPD3, ZNF575, PINLYP, PLAUR, PHLDB3, XRCC1, ZNF576, TEX101) 0.482 1 NA 1.1632879991248 558 0.481454846374114 5 5 0 -5.76569450096004 LTS-031 chr19 44174289 44222614 48326 * c(PLAUR, IRGC) NA 0 NA 0.896 1 NA NA NA NA NA LTS-031 chr19 44222615 45117067 894453 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, IGSF23, ZNF285, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, KCNN4, CEACAM22P, SMG9, IRGC, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.438857610340221 23 0.0525815008272778 0.886468109684791 1310 0.312460237353659 2 1 1 -6.73398805661223 LTS-031 chr19 45117068 45117169 102 * IGSF23 NA 0 NA 1.199 1 NA NA NA NA NA LTS-031 chr19 45117170 48284585 3167416 * c(SNAR-E, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, TOMM40, PPP1R13L, CD3EAP, CLASRP, KPTN, CKM, AP2S1, CLPTM1, PPM1N, KLC3, IGSF23, DACT3, SIX5, IGFL2, ZNF296, DMPK, DMWD, ERCC1, ERCC2, ZC3H4, FBXO46, FOSB, CBLC, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, GPR4, PPP1R37, NKPD1, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, NA NA NA NA NA NA NA NA NA LTS-031 FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, IGFL1, CEACAM16, BLOC1S3, BHMG1, IGFL3, BCAM, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, PPP5C, MEIS3, CEACAM19, PTGIR, PNMAL2, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, SELENOW, HIF3A, SLC1A5, SLC8A2, SNRPD2, SNORD23, MIR642A, C5AR1, CCDC61, VASP, MIR769, TRAPPC6A, FKRP, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, ZNF541, NAPA, PGLYRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 EXOC3L2, LOC93429, GNG8, DHX34) 0.442715955477611 97 0.066382652644836 1.09651667814509 5394 0.500623931147003 4 2 2 -6.73548326871549 LTS-031 NA NA NA NA LTS-031 chr19 48284586 48304501 19916 * c(TPRX1, SELENOW) NA 0 NA 0.753 1 NA NA NA NA NA LTS-031 chr19 48304502 48598921 294420 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SULT2A1, PLA2G4C) 0.404299424153277 21 0.0807037203367384 0.707580816554347 361 0.563152840456633 1 1 0 -6.75210101513684 LTS-031 chr19 48598922 50462029 1863108 * c(SNAR-G1, SNAR-G2, MIR4324, CARD8-AS1, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, KDELR1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, FCGRT, ATF5, CARD8, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, IL4I1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, NA NA NA NA NA NA NA NA NA LTS-031 SLC6A16, GRIN2D, GYS1, HRC, PRMT1, IRF3, KCNA7, KCNJ14, LHB, LIG1, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, TMEM143, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, SULT2B1, TULP2, CA11, TBC1D17, FUZ, MED25, BCL2L12, GRWD1, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, CYTH2, CCDC114, CGB5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 CGB7, CGB8, CD37) 0.448427327805037 113 0.046739787921731 1.16658318733813 5171 0.685277926727619 4 2 2 -6.76674086027819 LTS-031 NA NA NA NA LTS-031 chr19 50462030 51914353 1452324 * c(SNAR-F, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, SIGLEC11, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, ZNF473, KLK13, SIGLEC7, SIGLEC9, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, NA NA NA NA NA NA NA NA NA LTS-031 NR1H2, MYH14, SYT3, C19orf48, SIGLEC10, CTU1, ACPT, LRRC4B, CD33, NAPSA, KLK4) 0.443642128687296 59 0.0510233613310568 0.955054773647216 2610 0.476016026441152 2 1 1 -6.76815825561721 LTS-031 NA NA NA NA LTS-031 chr19 51914354 52097651 183298 * c(LOC100129083, SIGLEC8, CEACAM18, LINC01530, ZNF175, SIGLEC10, SIGLEC12, SIGLEC6) 0.436364613862702 8 0.0783817352995673 0.662906790910101 433 0.270066723504684 0 0 0 -6.73440861768231 LTS-031 chr19 52097652 52101769 4118 * character(0) NA 0 NA 2.054 1 NA NA NA NA NA LTS-031 chr19 52101770 52888081 786312 * c(SIGLEC14, SPACA6, ZNF480, ZNF836, ZNF610, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, ZNF880, MIRLET7E, MIR125A, MIR99B, PPP2R1A, ZNF350, ZNF649, MIR643, ZNF613, ZNF614, ZNF577, SIGLEC5, ZNF616, ZNF766, ZNF432) 0.426168837858668 28 0.0495549505265934 1.01362958464275 1140 0.498323130288709 3 2 1 -6.73540491487663 LTS-031 chr19 52888082 53517422 629341 * c(ZNF816-ZNF321P, ZNF816, ZNF534, ZNF578, ERVV-1, ZNF600, ZNF320, ZNF808, ZNF321P, ZNF880, ZNF701, ZNF83, ZNF28, ZNF137P, ZNF702P, ZNF611, ZNF528, ZNF468) 0.449432430051132 22 0.0419904132534416 0.712630833837275 658 0.377972882836334 0 0 0 -6.79615932641789 LTS-031 chr19 53517423 53553859 36437 * c(ERVV-2, ERVV-1) 0.456 1 NA 0.307299704703369 51 0.216482132577934 0 0 0 -6.01286144117385 LTS-031 chr19 53553860 53788218 234359 * c(ERVV-2, VN1R2, VN1R4, ZNF677, ZNF818P, ZNF415, FAM90A27P, ZNF665, ZNF347, ZNF160) 0.406126367967566 29 0.0760455690453334 0.88042206880686 404 0.530333824979838 1 1 0 -6.75708922077424 LTS-031 chr19 53788219 53792975 4757 * BIRC8 NA 0 NA 0.527 1 NA NA NA NA NA LTS-031 chr19 53792976 54377400 584425 * c(MIR1283-2, MIR1323, MIR1283-1, MIR371B, BIRC8, ZNF813, TPM3P9, ZNF525, LOC284379, ZNF761, MIR372, MIR373, DPRX, ZNF331, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, NA NA NA NA NA NA NA NA NA LTS-031 MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, ZNF765, NLRP12, MYADM, ZNF845) 0.447172491992156 19 0.0494288430606644 0.65220969201009 853 0.41478470947816 0 0 0 -6.75068383128318 LTS-031 NA NA NA NA LTS-031 chr19 54377401 54385524 8124 * c(PRKCG, MYADM) NA 0 NA 1.56540374857909 40 0.888322879262103 8 NA NA -5.76441030081074 LTS-031 chr19 54385525 54610553 225029 * c(MIR935, OSCAR, VSTM1, TFPT, TARM1, NDUFA3, PRKCG, CACNG8, CACNG7, CACNG6) 0.430041756222176 11 0.0632186681289633 0.72318683742122 542 0.353771639216867 0 0 0 -6.75746887928935 LTS-031 chr19 54610554 54610667 114 * TFPT NA 0 NA 1.64 1 NA NA NA NA NA LTS-031 chr19 54610668 54720811 110144 * c(LILRB3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.421126686116755 5 0.0253929123969662 1.20572164647702 538 0.562979278816339 8 5 3 -6.7519725756326 LTS-031 chr19 54720812 54720863 52 * c(LILRB3, LILRA6) NA 0 NA 0.604 1 NA NA NA NA NA LTS-031 chr19 54720864 54928075 207212 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA4, LILRA5, LAIR1, TTYH1, LILRA6) 0.434040284747 24 0.0589752465882503 0.627496908193624 517 0.333013960409107 0 0 0 -6.73788103772256 LTS-031 chr19 54928076 54930271 2196 * TTYH1 NA 0 NA 0.879 1 NA NA NA NA NA LTS-031 chr19 54930272 54976702 46431 * c(LENG8, CDC42EP5, TTYH1, LENG9) 0.44804420290407 10 0.027670481664683 1.03292280421397 279 0.380899564212912 4 2 2 -6.80207247376322 LTS-031 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.321 1 NA NA NA NA NA LTS-031 chr19 55009101 55174498 165398 * c(LILRB1, LILRB4, LILRA1, LILRA2, LAIR2, KIR3DX1) 0.440237529498798 18 0.0422200893854148 0.50237005256934 302 0.280618782205098 0 0 0 -6.81382515883014 LTS-031 chr19 55174499 55176505 2007 * LILRB4 NA 0 NA 0.522635623951579 27 0.158209938421657 0 NA NA -5.7666137010665 LTS-031 chr19 55176506 55176531 26 * LILRB4 NA 0 NA 0.964 1 NA NA NA NA NA LTS-031 chr19 55176532 55236800 60269 * c(LILRB4, KIR3DL3, LILRP2) 0.215 1 NA 0.792903583966263 73 0.286262856051823 1 1 0 -5.76514694128497 LTS-031 chr19 55236801 55377909 141109 * c(KIR3DL3, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2) 0.342175537243765 63 0.0817411052955053 0.831391139864815 298 0.361596369310091 3 3 0 -6.77221994665374 LTS-031 chr19 55377910 55377918 9 * c(KIR3DL1, KIR3DL2) NA 0 NA 0.417 1 NA NA NA NA NA LTS-031 chr19 55377919 55525497 147579 * c(RNU6-64P, NLRP7, FCAR, KIR3DL1, KIR3DL2, GP6, NLRP2, NCR1) 0.286030384358458 6 0.15191368163094 0.573421662724125 297 0.355879636857135 3 3 0 -6.9775457867085 LTS-031 chr19 55525498 55525596 99 * GP6 0.441 1 NA 0.619714527020718 3 0.033 0 0 0 -5.76451341023185 LTS-031 chr19 55525597 55526277 681 * GP6 0.479 1 NA 0.454956958810608 17 0.176187483697806 0 0 0 -5.7660455445779 LTS-031 chr19 55526278 55526345 68 * GP6 0.477 1 NA 0.932 1 NA NA NA NA NA LTS-031 chr19 55526346 55918953 392608 * c(RDH13, COX6B2, TMEM190, PPP6R1, HSPBP1, TMEM86B, UBE2S, TMEM150B, FAM71E2, DNAAF3, IL11, TMEM238, GP6, PPP1R12C, EPS8L1, PTPRH, RPL28, SYT5, TNNI3, TNNT1, BRSK1, KMT5C) 0.432077291637589 36 0.0667100989475155 1.03259454251629 1311 0.458628078282132 3 2 1 -6.73699570732561 LTS-031 chr19 55918954 55942883 23930 * c(UBE2S, SHISA7) NA 0 NA 0.441 1 NA NA NA NA NA LTS-031 chr19 55942884 55944981 2098 * SHISA7 NA 0 NA 0.525015879798927 44 0.17751639146541 0 NA NA -5.76616314540101 LTS-031 chr19 55944982 56228321 283340 * c(SBK3, ZNF865, U2AF2, ZNF524, ZNF784, ZNF579, SSC5D, CCDC106, EPN1, NLRP9, ZNF580, ZNF581, NAT14, SBK2, SHISA7, ISOC2, FIZ1, ZNF628) 0.426480308465922 17 0.114051233327524 1.26878889663262 766 1.0993966301933 5 3 2 -6.73543782990662 LTS-031 chr19 56228322 56235326 7005 * NLRP9 NA 0 NA 0.867 1 NA NA NA NA NA LTS-031 chr19 56235327 56249765 14439 * NLRP9 NA 0 NA 0.607493682528199 57 0.24298670379375 0 NA NA -5.76500452903659 LTS-031 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 0.01 1 NA NA NA NA NA LTS-031 chr19 56270381 56284429 14049 * c(RFPL4A, RFPL4AL1) 0.387981237813082 3 0.129932033514962 0.299833424190053 66 0.244320211473111 1 1 0 -6.88403471534121 LTS-031 chr19 56284430 56284435 6 * RFPL4AL1 NA 0 NA 0.362 1 NA NA NA NA NA LTS-031 chr19 56284436 56573177 288742 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11, RFPL4AL1) 0.439656781350219 26 0.0469425344273351 0.55797606734131 488 0.249989971051407 0 0 0 -6.79393557929258 LTS-031 chr19 56573178 58898193 2325016 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, PEG3-AS1, ZNF587B, MIR4754, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, ZIM3, ZNF837, ZNF543, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, NA NA NA NA NA NA NA NA NA LTS-031 ZNF444, ZNF416, VN1R1, ZNF304, ZNF471, USP29, ZNF71, ZNF667, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZNF587, GALP, ZNF551, ZNF835, ZNF264) 0.449280349406584 60 0.0450696228512598 0.976809180579591 3828 0.741224383207612 2 1 1 -6.79683664381013 LTS-031 NA NA NA NA LTS-031 chr19 58898194 59084001 185808 * c(MZF1-AS1, MIR4754, TRIM28, SLC27A5, ZNF584, ZNF324, CHMP2A, ZNF324B, ZNF446, RPS5, RNF225, MZF1, ZNF132, ZBTB45, UBE2M) NA 0 NA 1.06320115890691 557 0.420211801238503 4 NA NA -5.76523605564436 LTS-031 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.479 1 NA 0.43632281566751 35 0.25830422100352 0 0 0 -5.86068217780408 LTS-031 chr20 138126 241177 103052 * c(DEFB127, DEFB129, DEFB128, DEFB132) 0.461864252642084 11 0.0310266747405284 0.574793286699876 91 0.243647467461676 0 0 0 -7.06460541570984 LTS-031 chr20 241178 1456648 1215471 * c(SDCBP2-AS1, FKBP1A-SDCBP2, RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.427847927144305 46 0.0865724376260813 0.966297481807954 1722 0.487160021709662 3 2 1 -6.73465534947029 LTS-031 chr20 1456649 1456684 36 * SIRPB2 NA 0 NA 0.578 1 NA NA NA NA NA LTS-031 chr20 1456685 1896147 439463 * c(LOC100289473, SIRPB1, SIRPD, SIRPA, SIRPB2, SIRPG) 0.405234232207277 19 0.0711995384044437 0.687470764274208 250 0.394227336631785 1 1 0 -6.76843504350682 LTS-031 chr20 1896148 1902165 6018 * SIRPA NA 0 NA 1.184 1 NA NA NA NA NA LTS-031 chr20 1902166 10594159 8691994 * c(SNORD119, SNAP25-AS1, UBOX5-AS1, TMEM239, MIR1292, MIR103B2, PCNA-AS1, LINC00658, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PLCB1, PRND, LAMP5, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, FERMT1, PRNP, TMX4, GPCPD1, NA NA NA NA NA NA NA NA NA LTS-031 CPXM1, PAK5, MAVS, EBF4, PTPRA, FASTKD5, ANKEF1, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, MKKS, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.440497172407722 180 0.0565727063600796 0.959683848213641 6446 0.447051148011864 3 2 1 -6.78339672590569 LTS-031 NA NA NA NA LTS-031 chr20 10594160 10601944 7785 * SLX4IP NA 0 NA 1.562 1 NA NA NA NA NA LTS-031 chr20 10601945 10639284 37340 * c(SLX4IP, JAG1) 0.464958693934345 5 0.025 1.44522661998948 200 0.739603069899676 8 4 4 -7.33305694340728 LTS-031 chr20 10639285 10639288 4 * JAG1 NA 0 NA 0.872 1 NA NA NA NA NA LTS-031 chr20 10639289 17608398 6969110 * c(MACROD2-AS1, ISM1-AS1, DSTN, MACROD2, ISM1, JAG1, BTBD3, FLRT3, LOC339593, PCSK2, ESF1, SPTLC3, KIF16B, TASP1, OTOR, RRBP1, BFSP1, SNRPB2, NDUFAF5, SEL1L2) 0.436544834046389 33 0.0896125287168614 1.02757101860455 1692 0.51846779517709 3 2 1 -6.76114273203767 LTS-031 chr20 17608399 17610481 2083 * RRBP1 NA 0 NA 2.199 1 NA NA NA NA NA LTS-031 chr20 17610482 17640811 30330 * RRBP1 NA 0 NA 1.8709166507502 57 0.580390234182862 11 NA NA -5.76442171671618 LTS-031 chr20 17640812 17640814 3 * RRBP1 NA 0 NA 1.276 1 NA NA NA NA NA LTS-031 chr20 17640815 26188981 8548167 * c(C20orf78, LOC100130264, LOC100134868, LINC01432, LOC100270804, PET117, MIR3192, CST8, SEC23B, POLR3F, RBBP9, CSTL1, CST9L, CST9, LINC00261, BANF2, NANP, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, LINC00656, XRN2, CD93, NINL, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, FAM182A, MIR663AHG, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, NA NA NA NA NA NA NA NA NA LTS-031 CRNKL1, RIN2, DZANK1, KIZ, APMAP, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, NAPB, GZF1, NKX2-4, SSTR4, SNORD17, THBD, MIR663A, FAM182B, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.409645813975508 74 0.0831929961114471 0.939649383965947 4374 0.459585934186218 3 2 1 -6.82533245350528 LTS-031 NA NA NA NA LTS-031 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.855 1 NA NA NA NA NA LTS-031 chr20 29625845 29625876 32 * FRG1BP 0.274 1 NA 1.322 1 NA NA NA NA NA LTS-031 chr20 29625877 30053429 427553 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP) 0.343262893208388 21 0.120636368203512 0.704234822745597 171 0.317201150263113 2 2 0 -6.87813709552949 LTS-031 chr20 30053430 30060650 7221 * DEFB124 NA 0 NA 2.392 1 NA NA NA NA NA LTS-031 chr20 30060651 31427760 1367110 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, TSPY26P, NOL4L, CCM2L, LINC00028, LOC149950, COMMD7, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, DEFB124, C20orf203, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.435887445600503 31 0.0953773152173226 0.94573419710416 2213 0.483588746533336 3 2 1 -6.74364129921767 LTS-031 chr20 31427761 31434523 6763 * MAPRE1 NA 0 NA 0.581 1 NA NA NA NA NA LTS-031 chr20 31434524 31975291 540768 * c(BPIFB6, BPIFA3, BPIFA2, SUN5, BPIFB4, MAPRE1, BPIFA4P, BPIFB3, BPIFA1, CDK5RAP1, BPIFB2, BPIFB1) 0.450203198767574 24 0.0410396591504901 0.761128218025023 850 0.279396858296525 2 1 1 -6.85971115401532 LTS-031 chr20 31975292 34090398 2115107 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, CEP250, PXMP4, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, EIF6, ASIP, CDK5RAP1, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, GDF5, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.436892932650168 43 0.0963736729005902 1.1169269475907 2897 0.559191127358424 4 2 2 -6.73393054328034 LTS-031 chr20 34090399 37210064 3119666 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MYL9, BLCAP, CEP250, VSTM2L, SNHG11, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, ADIG, EPB41L1, DLGAP4, SAMHD1, AAR2, SNORA71B, SNORA71A, GHRH, SNHG17, LBP, NNAT, PHF20, SCAND1, ERGIC3, C20orf24, CTNNBL1, RALGAPB, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, DSN1, SLA2, KIAA1755, CPNE1, NFS1, NA NA NA NA NA NA NA NA NA LTS-031 RBM39, TTI1) 0.431956839269695 63 0.0898888145206869 0.999696636829938 4324 0.468357369329346 3 2 1 -6.73503949808648 LTS-031 NA NA NA NA LTS-031 chr20 37210065 37213943 3879 * ADIG NA 0 NA 0.61 1 NA NA NA NA NA LTS-031 chr20 37213944 37668371 454428 * c(SLC32A1, ADIG, PPP1R16B, ARHGAP40, DHX35, ACTR5, FAM83D) 0.443847744293744 12 0.0438187554973134 0.804677933262034 597 0.34561201874962 2 1 1 -6.75736077936756 LTS-031 chr20 39314453 44099877 4785425 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, SGK2, WFDC2, TOMM34, SERINC3, PTPRT, PKIG, RBPJL, FITM2, WFDC12, RIMS4, R3HDML, GTSF1L, WFDC5, ZHX3, L3MBTL1, TP53TG5, HNF4A, KCNS1, MYBL2, IFT52, OSER1, PIGT, PI3, PLCG1, DBNDD2, JPH2, KCNK15, SDC4, SEMG1, SEMG2, SRSF6, LPIN3, SLPI, STK4, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, PABPC1L, CHD6, TOX2, MATN4, WISP2, EMILIN3, SYS1, MAFB) 0.429268520674304 68 0.0703693051923723 1.07146785048664 4311 0.462053862019539 4 2 2 -6.75454481150248 LTS-031 chr20 44099878 44108037 8160 * WFDC2 NA 0 NA 0.766 1 NA NA NA NA NA LTS-031 chr20 44108038 44403130 295093 * c(EPPIN-WFDC6, WFDC2, SPINT3, WFDC3, WFDC10A, WFDC6, WFDC13, WFDC11, WFDC9, WFDC10B, SPINT4, EPPIN, WFDC8) 0.431471152324406 11 0.07799778551635 0.783963654204165 307 0.398957860859843 2 1 1 -6.75148767368385 LTS-031 chr20 44403131 57617932 13214802 * c(ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, MIR4325, MIR3194, MTRNR2L3, MIR3616, SLMO2-ATP5E, MIR4756, MIR4532, MIR5095, ATP9A, TRERNA1, CEBPB, ARFGEF2, UBE2C, TP53RK, DNTTIP1, FAM210B, SPATA25, OCSTAMP, TSHZ2, C20orf85, WFDC3, GCNT7, CBLN4, CTCFL, NEURL2, ZSWIM3, FAM65C, CSE1L, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, SNORD12C, MOCS3, GNAS, NA NA NA NA NA NA NA NA NA LTS-031 LINC00494, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, FAM209B, SUMO1P1, MIR296, MC3R, MMP9, ZFAS1, NFATC2, SLC35C2, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PLTP, CTSA, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, RNF114, SULF2, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, PREX1, PTPN1, NCOA5, ELMO2, ZNF335, PCIF1, CDH22, SLC13A3, BMP7, SNAI1, STAU1, AURKA, SNORD12, MIR645, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 TFAP2C, TNNC2, UBE2V1, MKRN7P, ZNF217, NPEPL1, TUBB1, ZBP1, SLC2A10, NCOA3, PARD6B, RAE1, BCAS1, STX16, DPM1, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, SPATA2) 0.437303966071732 187 0.0565015495799835 1.15754164590262 9616 0.580699410655437 4 2 2 -6.78895126729478 LTS-031 NA NA NA NA LTS-031 chr20 57617933 57901097 283165 * c(ZNF831, EDN3) 0.451665184531861 5 0.0572031467665897 0.741103794299615 286 0.256442311655973 0 0 0 -6.81047665815745 LTS-031 chr20 57901098 58179957 278860 * PHACTR3 NA 0 NA 4.177 1 NA NA NA NA NA LTS-031 chr20 58179958 62188120 4008163 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1257, MIR4326, MIR3196, LOC100506384, MIR4758, MIR4533, LINC00659, OGFR-AS1, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, PHACTR3, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, LSM14B, EEF1A2, C20orf166-AS1, SS18L1, MTG2, SLCO4A1, C20orf197, MIR646HG, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, YTHDF1, GID8, PPP1R3D, MRGBP, ARFGAP1, NA NA NA NA NA NA NA NA NA LTS-031 PSMA7, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, SRMS, TAF4, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, CABLES2, OSBPL2) 0.429492155041204 123 0.0671261392149658 1.06054207860228 4414 0.476500362181047 4 2 2 -6.76000167586329 LTS-031 NA NA NA NA LTS-031 chr20 62188121 62189386 1266 * character(0) NA 0 NA 2.883 1 NA NA NA NA NA LTS-031 chr20 62189387 62191930 2544 * HELZ2 0.470985543976619 3 0.0221885856541901 2.27693260330225 39 1.18318225832298 19 10 9 -7.7918496380857 LTS-031 chr20 62191931 62191937 7 * HELZ2 0.436 1 NA 0.821 1 NA NA NA NA NA LTS-031 chr20 62191938 62200126 8189 * HELZ2 0.415434321996302 14 0.0426008822072403 0.86518579326609 166 0.216891527292266 1 1 0 -6.73620798324519 LTS-031 chr20 62200127 62700824 500698 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, SAMD10, ABHD16B, PRPF6, GMEB2, LINC00176, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.424950014841648 47 0.049376978759867 1.2503111520774 1582 0.484803441470303 5 3 2 -6.75119161167634 LTS-031 chr20 62700825 62701070 246 * TCEA2 NA 0 NA 0.835 1 NA NA NA NA NA LTS-031 chr20 62701071 62907521 206451 * c(RGS19, LKAAEAR1, NPBWR2, MYT1, OPRL1, PCMTD2, TCEA2) 0.399695884269294 12 0.0687326837696726 0.98154016083831 462 0.443870672411341 4 3 1 -6.74533628898732 LTS-031 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.43584803234751 11 0.543348322901617 7 NA NA -5.76441316231213 LTS-031 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.459 1 NA 0.470655113009518 29 0.197403571271492 0 0 0 -5.88937332040422 LTS-031 chr21 9907272 11059877 1152606 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.355628972979066 42 0.0778997688298228 0.681709652390584 183 0.548713264321251 2 2 0 -6.89060123042026 LTS-031 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.74866080219413 5 1.51041593609178 10 NA NA -5.76441440922546 LTS-031 chr21 14745307 14917181 171875 * MIR3156-3 0.487 1 NA 0.533583094357439 53 0.380154009734952 0 0 0 -5.79097676547002 LTS-031 chr21 14917182 15956136 1038955 * c(SAMSN1-AS1, LIPI, ABCC13, POTED, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.460638938087419 9 0.0218828954005431 0.665228707711322 326 0.359819541066187 0 0 0 -7.28573080875644 LTS-031 chr21 15956137 15964241 8105 * SAMSN1-AS1 NA 0 NA 1.273 1 NA NA NA NA NA LTS-031 chr21 15964242 31312350 15348109 * c(GRIK1-AS2, LINC01549, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, GRIK1, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, NA NA NA NA NA NA NA NA NA LTS-031 BACH1, JAM2, GRIK1-AS1, NRIP1, ADAMTS1) 0.419998330896542 85 0.0739958890522889 0.902829693713149 3065 0.502373057547272 2 1 1 -6.80679244122867 LTS-031 NA NA NA NA LTS-031 chr21 31312351 31538170 225820 * character(0) NA 0 NA 0.433 1 NA NA NA NA NA LTS-031 chr21 31538171 32491064 952894 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.426687580657168 18 0.0445493410821044 0.472436965132232 570 0.210190775121474 0 0 0 -7.84578342150273 LTS-031 chr21 32491065 32491170 106 * TIAM1 NA 0 NA 1.436 1 NA NA NA NA NA LTS-031 chr21 32491171 38997227 6506057 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, OLIG2, DSCR3, LINC00310, OLIG1, TCP10L, RCAN1, DYRK1A, MORC3, CLDN14, DSCR9, GART, DONSON, HUNK, HLCS, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, PIGP, RIPPLY3, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, SETD4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, NA NA NA NA NA NA NA NA NA LTS-031 SON, SNORA80A, TIAM1, TTC3, LINC01548, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, PAXBP1, URB1, CRYZL1, DOPEY2, KCNE2) 0.443348528138792 112 0.04284173588893 0.956325731113379 5978 0.802880967168431 2 1 1 -6.78779523036542 LTS-031 NA NA NA NA LTS-031 chr21 38997228 39672098 674871 * c(DSCR4, DSCR10, KCNJ6, KCNJ15, DSCR8) 0.430133896503899 3 0.0322541986930901 0.636906027682747 127 0.19617233062307 0 0 0 -6.77795175926599 LTS-031 chr21 39672099 43916481 4244383 * c(MIR3197, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, LINC00479, UMODL1-AS1, DSCAM, PLAC4, ERG, ETS2, NA, BACE2, C2CD2, LINC00323, HMGN1, KCNJ15, LINC00114, MX1, MX2, ZBTB21, PCP4, UBASH3A, BRWD1, LINC00112, LINC00111, FAM3B, RIPK4, PRDM15, SH3BGR, TMPRSS3, TFF1, TFF2, TFF3, TMPRSS2, WRB, PSMG1, RSPH1, UMODL1, ABCG1) 0.414457638078387 103 0.0686380256463553 1.04325820459988 3380 0.635491923799345 3 2 1 -6.7757894278055 LTS-031 chr21 43916482 45557262 1640781 * c(WDR4, HSF2BP, LINC00313, CRYAA, CSTB, SIK1, RRP1B, LINC00319, AATBC, NDUFV3, PDE9A, PKNOX1, SLC37A1, AGPAT3, PWP2, TRAPPC10, U2AF1, C21orf33, PDXK, RRP1, CBS) 0.426386195457978 56 0.0500340111596829 1.23547973235183 2033 0.53260239197295 5 3 2 -6.74538758181719 LTS-031 chr21 45557263 45560055 2793 * C21orf33 NA 0 NA 0.76 1 NA NA NA NA NA LTS-031 chr21 45560056 46687696 1127641 * c(ITGB2-AS1, LRRC3-AS1, ADARB1, TSPEAR-AS2, POFUT2, ICOSLG, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, PFKL, TSPEAR, SUMO3, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, LRRC3, C21orf33, LINC01547, FAM207A) 0.381686167224601 75 0.0596113478525087 0.985885130114524 2056 0.462470790346179 4 3 1 -6.79851017659765 LTS-031 chr21 46687697 46689702 2006 * POFUT2 NA 0 NA 3.59 1 NA NA NA NA NA LTS-031 chr21 46689703 48084820 1395118 * c(LOC100129027, DIP2A-IT1, COL18A1-AS2, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, COL18A1-AS1, LSS, PCNT, PCBP3, C21orf58, YBEY, S100B, LOC642852, SLC19A1, COL18A1, SPATC1L, MCM3AP) 0.42595957388555 74 0.0470443735641463 1.20387259557914 2270 0.547306999206579 5 3 2 -6.74795374295786 LTS-031 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.42584976360929 5 0.531908544770621 7 NA NA -5.76441019029387 LTS-031 chr22 16157762 17289017 1131256 * c(CCT8L2, XKR3, ANKRD62P1-PARP4P3, POTEH, TPTEP1, OR11H1) 0.414739388315461 13 0.061014184983746 0.505886460760847 223 0.30232871674943 0 0 0 -7.24514569154818 LTS-031 chr22 17289018 17325310 36293 * c(XKR3, HSFY1P1) NA 0 NA 0.975 1 NA NA NA NA NA LTS-031 chr22 17325311 18301918 976608 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, IL17RA, BCL2L13, CECR6, CECR5, CECR3, CECR2, CECR1, ATP6V1E1, MICAL3, BID, SLC25A18) 0.432570331764939 58 0.0563047649650875 0.866258881420253 1269 0.391762927291184 2 1 1 -6.74041512590251 LTS-031 chr22 18301919 18304118 2200 * MICAL3 NA 0 NA 1.084 1 NA NA NA NA NA LTS-031 chr22 18304119 18628748 324630 * c(FLJ41941, TUBA8, PEX26, MICAL3, MIR648) 0.471806847077281 11 0.0245767813559502 1.16314838227976 392 0.527037913589745 4 2 2 -7.66588299853999 LTS-031 chr22 18628749 18640285 11537 * USP18 NA 0 NA 0.762 1 NA NA NA NA NA LTS-031 chr22 18640286 19121600 481315 * c(USP18, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, PRODH, DGCR6, DGCR14, DGCR2) 0.444487074213043 27 0.0507052821807121 0.750825281074348 443 0.373746261738343 0 0 0 -6.78586757112545 LTS-031 chr22 19121601 20307418 1185818 * c(MIR1286, MIR1306, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, GNB1L, RANBP1, MRPL40, RTN4R, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, C22orf29, CLTCL1, DGCR14, CDC45, DGCR6L) 0.440156645758555 35 0.0617389053755797 0.992341537378246 2280 0.429244148433567 3 2 1 -6.75485010919209 LTS-031 chr22 20307419 20307499 81 * DGCR6L NA 0 NA 0.456 1 NA NA NA NA NA LTS-031 chr22 20307500 20724533 417034 * c(TMEM191B, PI4KAP1, NA, DGCR6L, RIMBP3) 0.391 1 NA 0.434894882569289 60 0.280989924824908 0 0 0 -6.2283396688078 LTS-031 chr22 20724534 20729746 5213 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-031 chr22 20729747 22300536 1570790 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29, PPM1F) 0.451735067436283 47 0.0582317215528154 0.995837196280161 2286 0.490980749884711 4 2 2 -6.80323819151923 LTS-031 chr22 22300537 22309908 9372 * PPM1F NA 0 NA 0.168 1 NA NA NA NA NA LTS-031 chr22 22309909 23482682 1172774 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, RSPH14, GNAZ, LL22NC03-63E9.3, MIR650, VPREB1, TOP3B, GGTLC2, BMS1P20) 0.427974383462518 41 0.0744214432775406 0.786901139524172 1089 0.612960896358217 1 1 0 -6.74687426805493 LTS-031 chr22 23482683 23487465 4783 * RSPH14 NA 0 NA 1.707 1 NA NA NA NA NA LTS-031 chr22 23487466 26194042 2706577 * c(DDTL, LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, ZDHHC8P1, C22orf15, GRK3, DDT, SPECC1L, CABIN1, TMEM211, GSTTP1, FBXW4P1, RGL4, GGT1, GGT5, MIF-AS1, GSTT1, POM121L9P, VPREB3, IGLL1, LRRC75B, LOC391322, CHCHD10, MIF, MMP11, PIWIL3, DRICH1, UPB1, SUSD2, BCR, BCRP3, ADORA2A-AS1, POM121L10P, CES5AP1, GSTTP2, SMARCB1, SLC2A11, SNRPD3, TOP1P2, ZNF70, GUCD1, MYO18B, KIAA1671, GUSBP11, DERL3, NA NA NA NA NA NA NA NA NA LTS-031 IGLL3P, LRP5L, RAB36) 0.434892175037247 76 0.0468640512359486 0.948521484830785 2931 0.453968071855602 3 2 1 -6.75808997152848 LTS-031 NA NA NA NA LTS-031 chr22 26194043 26219476 25434 * MYO18B NA 0 NA 0.471 1 NA NA NA NA NA LTS-031 chr22 26219477 26273893 54417 * MYO18B 0.464855537718504 2 0.0183847763108502 0.541108603543049 72 0.285473386811214 0 0 0 -7.76504253999389 LTS-031 chr22 26273894 26317160 43267 * MYO18B 0.231 1 NA 0.735351360274847 47 0.262402886313405 1 1 0 -5.76485854376817 LTS-031 chr22 26317161 26829349 512189 * c(SEZ6L, ASPHD2, MYO18B) 0.438471111704499 3 0.0621718049708494 0.507654665328043 259 0.26876864712123 0 0 0 -6.9746499227634 LTS-031 chr22 26829350 28202680 1373331 * c(MIR548J, CRYBA4, CRYBB1, TFIP11, SRRD, MN1, MIAT, ASPHD2, TPST2, HPS4) 0.349298719447562 10 0.132100508872769 0.833881192617714 651 0.354037791715655 2 2 0 -6.76159840284304 LTS-031 chr22 28202681 28208686 6006 * character(0) NA 0 NA 2.792 1 NA NA NA NA NA LTS-031 chr22 28208687 28497296 288610 * c(MIR3199-2, MIR3199-1, TTC28, PITPNB, TTC28-AS1) 0.386245743293396 4 0.0441691823182937 1.13089735079872 326 0.593445640072133 4 3 1 -6.75270483525638 LTS-031 chr22 28497297 32341587 3844291 * c(MIR3200, MIR3653, MIR3928, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL1S, CHEK2, PIK3IP1, EMID1, SELENOM, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, PES1, SEC14L2, PATZ1, PISD, OSBP2, PRR14L, C22orf31, C22orf24, RHBDD3, SEC14L3, INPP5J, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, LIMK2, DRG1, NEFH, NF2, OSM, PLA2G3, MTFP1, TUG1, CCDC157, ZMAT5, EIF4ENIF1, RFPL1, NA NA NA NA NA NA NA NA NA LTS-031 SMTN, GATSL3, TCN2, SEC14L6, XBP1, YWHAH, TBC1D10A, KREMEN1, ZNRF3, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, RNF185, GAL3ST1, DEPDC5, SFI1) 0.397334789674682 68 0.0547476191247109 0.842094296377362 5817 0.409522056321769 2 2 0 -6.90848947220461 LTS-031 NA NA NA NA LTS-031 chr22 32341588 32343369 1782 * YWHAH NA 0 NA 0.296 1 NA NA NA NA NA LTS-031 chr22 32343370 32853397 510028 * c(RFPL3S, RFPL3, RFPL2, C22orf42, AP1B1P1, BPIFC, LOC339666, RTCB, SLC5A1, SLC5A4, YWHAH) 0.327824620431844 20 0.075716142337855 0.586658000478588 599 0.30151517853071 2 2 0 -7.40081273038065 LTS-031 chr22 32853398 32870692 17295 * BPIFC NA 0 NA 1.047 1 NA NA NA NA NA LTS-031 chr22 32870693 35719773 2849081 * c(HMGXB4, TOM1, LARGE-AS1, MIR4764, FBXO7, TIMP3, SYN3, ISX, LARGE1) 0.381370162934415 26 0.09894051048678 0.760958718792194 742 0.467652303999036 1 1 0 -6.81216071154184 LTS-031 chr22 35719774 36536488 816715 * c(TOM1, MIR3909, RBFOX2, RASD2, HMOX1, MB, MCM5, APOL6, APOL5, APOL3) 0.396613138651821 16 0.0516447803106309 0.993491363526781 645 0.390710302443209 4 3 1 -6.76885952767035 LTS-031 chr22 36536489 36663563 127075 * c(APOL2, APOL4, APOL3, APOL1) 0.399855613616345 32 0.0516584529978302 0.69067646882572 319 0.292524189986222 1 1 0 -6.81092988659211 LTS-031 chr22 36663564 36677345 13782 * c(MYH9, APOL1) NA 0 NA 1.239 1 NA NA NA NA NA LTS-031 chr22 36677346 36886343 208998 * c(TXN2, MYH9, FOXRED2) 0.424022292268531 6 0.0658665317137619 1.1594330621899 327 0.492734255561 5 3 2 -6.74612916871957 LTS-031 chr22 36886344 36889627 3284 * FOXRED2 NA 0 NA 0.602 1 NA NA NA NA NA LTS-031 chr22 36889628 37708300 818673 * c(LL22NC01-81G9.3, CACNG2, IFT27, C1QTNF6, CSF2RB, TMPRSS6, CYTH4, TEX33, IL2RB, MPST, NCF4, PVALB, RAC2, SSTR3, TST, KCTD17, FOXRED2, EIF3D) 0.403218176761474 33 0.0530385258776366 0.804541512421671 1214 0.372087977620886 1 1 0 -6.78734277856471 LTS-031 chr22 37708301 37709391 1091 * CYTH4 NA 0 NA 0.663 1 NA NA NA NA NA LTS-031 chr22 37709392 37876362 166971 * c(ELFN2, CYTH4, CARD10, MFNG) 0.367350495702036 13 0.0768346543075721 0.61184711274609 272 0.278702372164967 2 2 0 -6.89391361714659 LTS-031 chr22 37876363 37876701 339 * c(CARD10, MFNG) NA 0 NA 1.485 1 NA NA NA NA NA LTS-031 chr22 37876702 39358391 1481690 * c(MIR4534, APOBEC3A_B, DNAL4, DDX17, KDELR3, TRIOBP, CDC42EP1, DMC1, ANKRD54, CSNK1E, APOBEC3A, GCAT, CBX6, NPTXR, SLC16A8, SH3BP1, MAFF, CBY1, SUN2, TMEM184B, GGA1, CARD10, H1F0, KCNJ4, LGALS1, LGALS2, LOC400927, MFNG, EIF3L, POLR2F, TOMM22, PDXP, FAM227A, SOX10, MIR658, MIR659, NOL12, BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, PICK1, GTPBP1, JOSD1) 0.405695516644095 36 0.0821778558980459 0.9684852829163 3235 0.759271924898498 4 3 1 -6.77050679490876 LTS-031 chr22 39358392 39388749 30358 * c(APOBEC3A_B, APOBEC3A, APOBEC3B) NA 0 NA 0.484174522321328 71 0.264498239525849 0 NA NA -5.78630868675538 LTS-031 chr22 39388750 39410019 21270 * c(APOBEC3A_B, APOBEC3B) NA 0 NA 1.214 1 NA NA NA NA NA LTS-031 chr22 39410020 40030811 620792 * c(LOC100506472, TAB1, APOBEC3D, APOBEC3H, APOBEC3F, CBX7, SNORD43, APOBEC3C, MGAT3, ATF4, PDGFB, MIEF1, APOBEC3G, RPL3, CACNA1I, SYNGR1, RPS19BP1) 0.407871853301859 29 0.0506164462456806 0.895263242646706 1068 0.458301880212649 1 1 0 -6.80117990713837 LTS-031 chr22 40030812 40036862 6051 * CACNA1I NA 0 NA 0.535 1 NA NA NA NA NA LTS-031 chr22 40036863 40546047 509185 * c(LOC100130899, FAM83F, ENTHD1, TNRC6B, CACNA1I, GRAP2) 0.412458743701098 6 0.0760493260982633 0.653570597225239 536 0.265930353229687 0 0 0 -6.80405986669079 LTS-031 chr22 40546048 42095704 1549657 * c(MIR1281, MIR4766, SLC25A17, TOB2, DNAJB7, CHADL, MEI1, ADSL, POLR3H, EP300, TNRC6B, ZC3H7B, XRCC6, CSDC2, DESI1, SGSM3, MCHR1, SNU13, ACO2, PMM1, MKL1, RANGAP1, XPNPEP3, ST13, TEF, C22orf46, L3MBTL2, PHF5A, RBX1) 0.395853196781098 39 0.0591107174975649 0.948441100733656 2926 0.479718113985913 4 3 1 -6.82352112525129 LTS-031 chr22 42095705 42099278 3574 * MEI1 NA 0 NA 0.422 1 NA NA NA NA NA LTS-031 chr22 42099279 42424233 324955 * c(TNFRSF13C, MEI1, WBP2NL, LINC00634, MIR33A, SHISA8, SEPT3, SREBF2, CENPM, CCDC134) 0.394343826150071 25 0.0490110531751087 0.724640890498842 673 0.325684931809983 1 1 0 -6.86893864390564 LTS-031 chr22 42424234 51137249 8713016 * c(LINC01310, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, WBP2NL, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, NA NA NA NA NA NA NA NA NA LTS-031 RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, NAGA, NDUFA6, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, SMDT1, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.382769652390929 385 0.0680857300732715 0.865805173080148 8954 0.421618505503542 2 2 0 -6.76030990817542 LTS-031 NA NA NA NA LTS-031 chr22 51137250 51183804 46555 * c(ACR, SHANK3) NA 0 NA 0.751846923508814 149 0.458490798349576 1 NA NA -5.76443025076307 LTS-031 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.293 1 NA NA NA NA NA LTS-031 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.442432168157772 73 0.227439182664868 0 NA NA -5.78938166766955 LTS-031 chrX 2699993 2715425 15433 * XG 0.446 1 NA 0.80556199038781 15 0.244449079321139 1 1 0 -5.76490830485592 LTS-031 chrX 2715426 9167965 6452540 * c(LINC01546, MIR4770, MIR4767, FAM9A, FAM9B, MXRA5, VCX, ARSH, ANOS1, LOC389906, STS, ARSD, ARSE, ARSF, VCX3B, VCX2, VCX3A, PRKX, NLGN4X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.397685338906858 30 0.0845628107711495 0.702513667958627 1427 0.441685617815239 1 1 0 -6.89084201445738 LTS-031 chrX 9167966 9621498 453533 * TBL1X NA 0 NA 0.929 1 NA NA NA NA NA LTS-031 chrX 9621499 12516859 2895361 * c(CLDN34, MSL3, CLCN4, AMELX, HCCS, SHROOM2, ARHGAP6, MID1, GPR143, WWC3, TBL1X, FRMPD4) 0.427195077703778 25 0.0612397746566723 0.840493061750042 1392 0.369914640970565 2 1 1 -6.77434100260937 LTS-031 chrX 12516860 12627760 110901 * FRMPD4 NA 0 NA 0.42 1 NA NA NA NA NA LTS-031 chrX 12627761 13681150 1053390 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.421698176880512 16 0.078415028321532 0.571765439140924 748 0.257668060745705 0 0 0 -6.90464234019046 LTS-031 chrX 13681151 15848703 2167553 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, TCEANC, FANCB, VEGFD, GLRA2, GPM6B, CA5BP1, PIGA, GEMIN8, TMEM27, ACE2, TRAPPC2, BMX, ZRSR2, OFD1, PIR, INE2, AP1S2, RAB9A) 0.397698125860514 24 0.101510752982206 0.777542919922451 1616 0.385189335454947 1 1 0 -6.75984043895907 LTS-031 chrX 15848704 15851053 2350 * AP1S2 0.48 1 NA 0.337273683755024 59 0.11689253108016 0 0 0 -5.80795452954555 LTS-031 chrX 15851054 23019935 7168882 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, PTCHD1-AS, PHEX-AS1, ADGRG2, SCML2, RAI2, BEND2, ZNF645, DDX53, EIF1AX, CNKSR2, SMPX, CXorf23, MAP7D2, KLHL34, GRPR, SH3KBP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RPS6KA3, RS1, SCML1, MAGEB17, SMS, CDKL5, LOC729609, S100G, AP1S2, REPS2, SYAP1) 0.43248396678938 20 0.0673044144950858 0.7556901150843 3900 0.371911790456254 1 1 0 -6.7640807519609 LTS-031 chrX 23019936 23096437 76502 * c(PTCHD1-AS, DDX53) NA 0 NA 0.356144245373277 41 0.191493765421023 0 NA NA -6.18118198210573 LTS-031 chrX 23096438 23352114 255677 * PTCHD1-AS NA 0 NA 1.207 1 NA NA NA NA NA LTS-031 chrX 23352115 25015015 1662901 * c(SUPT20HL1, ZFX-AS1, PRDX4, PTCHD1, SUPT20HL2, EIF2S3, ACOT9, CXorf58, PDK3, POLA1, SAT1, SCARNA23, ZFX, APOO, KLHL15, PCYT1B) 0.420953601336681 22 0.0421892510058297 0.732946924842537 1495 0.358689750116998 1 1 0 -6.74799521829949 LTS-031 chrX 25015016 25034152 19137 * c(ARX, POLA1) NA 0 NA 1.47584181594964 79 0.817858839175757 7 NA NA -5.7644185255545 LTS-031 chrX 26156999 27481434 1324436 * c(PPP4R3CP, VENTXP1, MAGEB6, MAGEB18, MAGEB5) 0.416131115378032 5 0.0789005703401439 0.469399475094923 168 0.215482976197844 0 0 0 -8.17258112555336 LTS-031 chrX 27481435 27536285 54851 * PPP4R3CP NA 0 NA 0.647 1 NA NA NA NA NA LTS-031 chrX 27536286 37265554 9729269 * c(IL1RAPL1, MAGEB10, DCAF8L1, MAGEB16, FAM47A, FAM47B, NA, DMD, NR0B1, TAB3, GK, CFAP47, DCAF8L2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTH1P18, FAM47C, FTHL17, PRRG1, NA, CXorf21, TMEM47) 0.40750014199505 26 0.0743000672947205 0.651099960026445 1851 0.299371234030165 0 0 0 -6.83915090172408 LTS-031 chrX 37265555 37285091 19537 * PRRG1 NA 0 NA 0.793 1 NA NA NA NA NA LTS-031 chrX 37285092 38535118 1250027 * c(CYBB, HYPM, LANCL3, OTC, PRRG1, RPGR, DYNLT3, TSPAN7, XK, SRPX, SYTL5) 0.43324569445828 14 0.0580289810126168 0.758306048958866 1001 0.331995142096423 1 1 0 -6.77676102451427 LTS-031 chrX 38535119 38540376 5258 * TSPAN7 NA 0 NA 0.986 1 NA NA NA NA NA LTS-031 chrX 38540377 41207456 2667080 * c(LOC100132831, ATP6AP2, CXorf38, DDX3X, LINC01281, MPC1L, BCOR, MID1IP1, TSPAN7, USP9X, MED14) 0.432789551171736 10 0.0513689270538783 0.947309304763762 1030 0.438827506394423 3 2 1 -6.7525621604337 LTS-031 chrX 41207457 47002190 5794734 * c(FUNDC1, DDX3X, GPR82, GPR34, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, NDUFB11, KRBOX4, CHST7, NYX, RP2, DUSP21, ZNF674, LINC01545, KDM6A, CXorf36, EFHC2, PPP1R2P9, SLC9A7, CASK, RGN, JADE3) 0.398353357495989 22 0.113432331984289 0.778815343612221 1830 0.377094338770669 1 1 0 -6.76298228278123 LTS-031 chrX 47002191 47003892 1702 * NDUFB11 NA 0 NA 1.262 1 NA NA NA NA NA LTS-031 chrX 47003893 47511641 507749 * c(SNORA11C, MIR4769, ELK1, ARAF, CDK16, CFP, NDUFB11, SYN1, TIMP1, UBA1, ZNF41, ZNF157, USP11, RBM10, UXT, INE1) 0.437584096217933 10 0.0438635510545043 0.947451331895596 1148 0.456407698553705 2 1 1 -6.74266071641045 LTS-031 chrX 47511642 48761722 1250081 * c(HDAC6, UXT-AS1, PQBP1, SSX3, TIMM17B, EBP, FTSJ1, GATA1, PCSK1N, SSX6, SSX9, ERAS, ZNF81, SPACA5, CXXC1P1, GLOD5, TBC1D25, ZNF630, RBM3, WDR13, PORCN, SSX1, SSX5, SUV39H1, SLC35A2, WAS, ZNF182, UXT, SLC38A5) 0.432062208919146 12 0.0550864334615625 0.749532921276539 1568 0.333113574012621 1 1 0 -6.77604441414591 LTS-031 chrX 48761723 49137702 375980 * c(PIM2, WDR45, PRAF2, GPKOW, CCDC22, KCND1, PRICKLE3, FOXP3, PLP2, OTUD5, GRIPAP1, SYP, TFE3, SLC35A2, CACNA1F, MAGIX, PPP1R3F, CCDC120) 0.446024825831932 4 0.0393319208785943 0.904648317636319 1518 0.463330668865803 2 1 1 -6.75516944681199 LTS-031 chrX 49137703 53108335 3970633 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, USP27X, MIR188, SPANXN5, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.384735048925842 15 0.074038471338185 0.725148161190903 1371 0.393489390256426 1 1 0 -6.88448337798995 LTS-031 chrX 53108336 53349851 241516 * c(IQSEC2, GPR173, TSPYL2, KDM5C) 0.486481187277799 2 0.000707106781186548 1.00768142660168 468 0.576904812353564 4 2 2 -27.1957722912315 LTS-031 chrX 53349852 57146035 3796184 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, PFKFB1, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, SMC1A, TSR2, FAM104B, PAGE5) 0.345551897334496 10 0.157722294626417 0.774814324023995 2935 0.343950250633157 1 1 0 -6.86157242349177 LTS-031 chrX 57146036 57937169 791134 * c(FAAH2, ZXDB, SPIN2B, SPIN2A, ZXDA) NA 0 NA 0.715033931336745 351 0.369277741173456 1 NA NA -5.77797972860174 LTS-031 chrX 61999880 65382685 3382806 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278, HEPH) 0.373 1 NA 0.763510718462135 1076 0.468126598037794 1 1 0 -5.76449858644972 LTS-031 chrX 65382686 71934101 6551416 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, CITED1, NONO, OPHN1, P2RY4, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, TAF1, OGT, SLC7A3, ZMYM3, ACRC, STARD8, HEPH, MED12) 0.427707393466363 45 0.0497801530367639 0.787264346997503 4684 0.376388316153955 1 1 0 -6.78935614552189 LTS-031 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.162 1 NA NA NA NA NA LTS-031 chrX 72066651 72299208 232558 * c(PABPC1L2A, PABPC1L2B, FAM226B) NA 0 NA 0.318844280474844 94 0.323230178751507 0 NA NA -6.36915514715455 LTS-031 chrX 72299209 73069810 770602 * c(CDX4, MAP2K4P1, PABPC1L2A, NAP1L2, CHIC1, NAP1L6, XIST, TSIX) 0.422641116891417 2 0.0869741340859454 0.688127042305626 610 0.319285501276215 0 0 0 -6.77025390565965 LTS-031 chrX 73069811 73808722 738912 * c(MIR374B, FTX, MIR374C, ZCCHC13, MIR374A, RLIM, JPX, SLC16A2, MIR545, MIR421, XIST) 0.487390753524675 2 0.0106066017177982 0.980382948937873 306 0.435363433959804 2 1 1 -11.721653517669 LTS-031 chrX 73808723 90693597 16884875 * c(UBE2DNL, MIR4328, CYSLTR1, CHM, DACH2, COX7B, APOOL, HDX, UPRT, MAGEE2, PABPC5, CYLC1, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, RPS6KA6, P2RY10, LPAR4, TTC3P1, KIAA2022, SATL1, PGAM4, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, CPXCR1, ATP7A, POU3F4, ATRX, KLHL4, MAGEE1, SH3BGRL, ZNF711, HMGN5, POF1B, MAGT1, GPR174, FGF16, TGIF2LX, ITM2A) 0.427199341752624 24 0.0476905597865408 0.700370384206451 3831 0.356409448430874 0 0 0 -7.22413769705072 LTS-031 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.271 1 NA NA NA NA NA LTS-031 chrX 91066177 91138364 72188 * PCDH11X NA 0 NA 0.291288105287578 130 0.112424316555148 0 NA NA -7.40642129095024 LTS-031 chrX 91138365 91876349 737985 * PCDH11X 0.351215069129967 3 0.122087400387318 0.598687068626764 143 1.34498763258381 2 2 0 -6.78090377339011 LTS-031 chrX 91876350 91878150 1801 * PCDH11X NA 0 NA 0.254989285064024 44 0.173877813955796 0 NA NA -5.79526472167597 LTS-031 chrX 91878151 101439808 9561658 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, CSTF2, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, PCDH11X, FAM133A, RPA4, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, ZMAT1, SYTL4, ARMCX2) 0.403943502650931 31 0.087852907369838 0.725292509417221 2648 0.590281493577211 1 1 0 -6.78547316494828 LTS-031 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.178 1 NA NA NA NA NA LTS-031 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.333588679559351 49 1.07848483608564 0 NA NA -5.79872607447917 LTS-031 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.831 1 NA NA NA NA NA LTS-031 chrX 101768565 108926835 7158271 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, SLC25A53, GLRA4, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, ZCCHC18, ARMCX5, SERPINA7, NA NA NA NA NA NA NA NA NA LTS-031 RNF128, MORC4, TCEAL4, ESX1, BHLHB9, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, RIPPLY1, TCEAL1, MORF4L2, GPRASP1) 0.401647362149683 34 0.0628986395654154 0.732189275231651 4560 0.360798007896507 1 1 0 -6.8203480341685 LTS-031 NA NA NA NA LTS-031 chrX 108926836 109590268 663433 * c(MIR3978, ACSL4, SNORD96B, TMEM164, AMMECR1) 0.465 1 NA 0.980419683253044 298 0.442057372515394 3 3 0 -5.7645516731486 LTS-031 chrX 109590269 109693753 103485 * c(RGAG1, AMMECR1) NA 0 NA 0.498 1 NA NA NA NA NA LTS-031 chrX 109693754 109917659 223906 * c(RGAG1, TDGF1P3, CHRDL1) 0.429 1 NA 0.447574412617405 155 0.200656894203647 0 0 0 -6.18777104216493 LTS-031 chrX 109917660 114953572 5035913 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, RBMXL3, AMOT, DCX, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, MIR448, LRCH2, SNORA35, TRPC5, ALG13, CAPN6, CHRDL1) 0.302049949069052 4 0.214156290280409 0.708147584506132 1669 0.337904467124089 1 1 0 -7.03744869000097 LTS-031 chrX 114953573 114953626 54 * character(0) NA 0 NA 0.324 1 NA NA NA NA NA LTS-031 chrX 114953627 117106822 2153196 * c(SLC6A14, AGTR2, CT83, KLHL13) 0.353874604234026 3 0.0979914962296899 0.542864201017399 340 0.23475552654728 0 0 0 -7.80322909907367 LTS-031 chrX 117106823 117107267 445 * KLHL13 NA 0 NA 0.764 1 NA NA NA NA NA LTS-031 chrX 117107268 148628393 31521126 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00893, CXorf51B, MIR320D2, MIR1277, SLC25A5-AS1, MIR514B, LINC00629, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, SLITRK4, SPANXN3, MAGEC3, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, NA NA NA NA NA NA NA NA NA LTS-031 FAM122B, FAM122C, ZCCHC12, NA, NA, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, FMR1, AFF2, ATP1B4, LDOC1, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, UBE2NL, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 FAM127C, CT45A3, CT45A5, SPANXN4, NDUFA1, SPANXN1, SPANXN2, MIR424, OCRL, ZDHHC9, TFDP3, MAGEC2, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, RAP2C, RPL39, SPANXA2-OT1, BCORL1, CXorf56, CT47B1, SMIM10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-031 SMIM10L2B, SPANXC, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, SLITRK2, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, TMEM257, CXorf40A, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1) 0.428954334704861 116 0.0790987578489914 0.782673631174487 11283 0.384813043012777 1 1 0 -6.84315962627449 LTS-031 NA NA NA NA LTS-031 chrX 148628394 148664794 36401 * CXorf40A NA 0 NA 0.267598783331889 50 0.174861415680754 0 NA NA -6.27578836924339 LTS-031 chrX 148664795 149014630 349836 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.406779467060322 5 0.0865026011169606 0.682350006382403 148 0.42710221066447 1 1 0 -6.7560126559143 LTS-031 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.026 1 NA NA NA NA NA LTS-031 chrX 149097210 149100977 3768 * CXorf40B NA 0 NA 0.264008409975694 39 0.15056731225458 0 NA NA -5.84357636267188 LTS-031 chrX 149100978 149101817 840 * CXorf40B NA 0 NA 0.618 1 NA NA NA NA NA LTS-031 chrX 149101818 151825944 2724127 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.452848903117541 23 0.0343649329491677 0.86135508215353 1522 0.447343958646547 2 1 1 -6.83559767796526 LTS-031 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.039 1 NA NA NA NA NA LTS-031 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.456314892406328 8 0.0352194649914747 0.420938642167525 127 0.301519557192529 0 0 0 -6.95982218759767 LTS-031 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 0.725 1 NA NA NA NA NA LTS-031 chrX 151995517 154507173 2511657 * c(SMIM9, CMC4, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, F8, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, MTCP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, NA NA NA NA NA NA NA NA NA LTS-031 SSR4, SNORA36A, SNORA56, TAZ, VBP1, ZNF185, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.423509848442634 48 0.0558272252401477 0.941408990513877 5317 0.490718332145435 3 2 1 -6.75253629162618 LTS-031 NA NA NA NA LTS-031 chrX 154507174 154563708 56535 * CLIC2 NA 0 NA 0.604783697390378 32 0.244059146387682 0 NA NA -5.76705172966767 LTS-031 chrX 154563709 154580232 16524 * CLIC2 NA 0 NA 0.32515279701576 40 0.442892138284082 0 NA NA -5.78828677385624 LTS-031 chrX 154580233 154774986 194754 * TMLHE NA 0 NA 1.07044698411433 39 1.75681747976845 4 NA NA -5.76444281259667 LTS-031 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.126789350107163 25 0.0889680092317832 0 NA NA -17.3128778182415 LTS-031 chrY 13309514 13310581 1068 * character(0) 0.5 1 NA 0.126451572149095 7 0.210877079971112 0 0 0 -5.80256379258486 LTS-031 chrY 13310582 13310602 21 * character(0) 0.312 1 NA 0.378 1 NA NA NA NA NA LTS-031 chr1 65893 721757 655865 * c(LOC100288069, LOC729737, OR4F5) 0.398 1 NA 1.27649253567763 12 0.521541966410444 4 4 0 -5.77101097406334 LTS-032 chr1 721758 1603048 881291 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-032 CDK11B) 0.349368590864572 64 0.0883327366893597 0.941461838254401 3037 0.286765096506682 3 2 1 -6.73739879161101 LTS-032 NA NA NA NA LTS-032 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.539 1 NA NA NA NA NA LTS-032 chr1 1606859 1639022 32164 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.403 1 NA 0.583333008000453 85 0.323061458367217 2 2 0 -5.76607672699854 LTS-032 chr1 1639023 1646672 7650 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.309438958226494 44 0.290160187587629 1 NA NA -5.765926918124 LTS-032 chr1 1646673 1666308 19636 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.400217383448858 13 0.0624715319781123 0.602277308498755 137 0.268222690222176 5 3 2 -6.86049892918202 LTS-032 chr1 1666309 1669715 3407 * c(SLC35E2B, SLC35E2) NA 0 NA 0.821 1 NA NA NA NA NA LTS-032 chr1 1669716 7796549 6126834 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-032 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.328484118769947 123 0.0912676121223971 0.976468189440103 5344 0.431154051922731 3 2 1 -6.83966875220885 LTS-032 NA NA NA NA LTS-032 chr1 7796550 7796892 343 * CAMTA1 NA 0 NA 0.733 1 NA NA NA NA NA LTS-032 chr1 7796893 16969373 9172481 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, CROCCP3, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, C1orf64, SLC2A7, DFFA, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, SZRD1, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, NA NA NA NA NA NA NA NA NA LTS-032 FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, FBLIM1, CASZ1, TMEM51, VPS13D, NBPF1, NECAP2, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, CROCCP2, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.337590153560858 256 0.0836516059407743 0.918631962919858 10266 0.243317051783731 3 2 1 -6.74442511072496 LTS-032 NA NA NA NA LTS-032 chr1 16969374 16971986 2613 * CROCCP2 NA 0 NA 0.614 1 NA NA NA NA NA LTS-032 chr1 16971987 17248500 276514 * c(MST1P2, MST1L, ESPNP, CROCC) 0.319303961128915 54 0.0969677538309456 0.70843180622072 415 0.355509814024864 3 2 1 -6.87521322610259 LTS-032 chr1 17248501 17248531 31 * CROCC NA 0 NA 1.259 1 NA NA NA NA NA LTS-032 chr1 17248532 17277626 29095 * CROCC 0.249244909554403 4 0.033070631482732 1.35553665970531 83 0.337695057857066 8 6 2 -6.83582543054639 LTS-032 chr1 17277627 17279893 2267 * CROCC NA 0 NA 0.762 1 NA NA NA NA NA LTS-032 chr1 17279894 19071865 1791972 * c(PADI2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, ACTL8, IGSF21, CROCC) 0.349497088981767 43 0.0701989736573624 1.01558056759137 1439 0.256172092704922 3 2 1 -6.89831359687666 LTS-032 chr1 19071866 19071910 45 * PAX7 NA 0 NA 0.72 1 NA NA NA NA NA LTS-032 chr1 19071911 21329354 2257444 * c(LOC100506730, MINOS1-NBL1, MIR4695, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, TAS1R2, CAPZB, AKR7A2, ALDH4A1, EIF4G3, CDA) 0.328131551772471 56 0.0851347594859307 0.946082479101457 3438 0.241002465896968 3 2 1 -6.79119107551187 LTS-032 chr1 21329355 21377323 47969 * EIF4G3 NA 0 NA 0.536 1 NA NA NA NA NA LTS-032 chr1 21377324 21961367 584044 * c(LOC100506801, ECE1, ALPL, RAP1GAP, NBPF3, EIF4G3) 0.190232490248193 22 0.175906827955063 0.689644273183137 559 0.237206947544708 2 2 0 -7.03332332024436 LTS-032 chr1 21961368 21976179 14812 * RAP1GAP NA 0 NA 1.023 1 NA NA NA NA NA LTS-032 chr1 21976180 25599159 3622980 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, CLIC4, SYF2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, NCMAP, LDLRAD2, WNT4, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, GRHL3, IL22RA1, RAP1GAP, RHD, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, NA NA NA NA NA NA NA NA NA LTS-032 USP48, RUNX3, STPG1, ZBTB40, CDC42) 0.352584663019451 127 0.0724666876736973 0.929705057234096 4757 0.23967835370251 3 2 1 -6.74134946992344 LTS-032 NA NA NA NA LTS-032 chr1 25599160 25656954 57795 * c(RSRP1, RHD) NA 0 NA 1.82057171969115 73 0.41511786025121 6 NA NA -5.76477466628847 LTS-032 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.087 1 NA NA NA NA NA LTS-032 chr1 25666924 28052560 2385637 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, FAM76A, EXTL1, FGR, WDTC1, TMEM50A, IFI6, ZNF683, LDLRAP1, AHDC1, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, ACTG1P20, LOC646471, CEP85, SLC9A1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, NA NA NA NA NA NA NA NA NA LTS-032 TRIM63, SYTL1, FCN3, MAP3K6, UBXN11) 0.337445119828866 82 0.0841382061230183 0.914188918641887 4002 0.233446463719391 3 2 1 -6.74466323355613 LTS-032 NA NA NA NA LTS-032 chr1 28052561 28586227 533667 * c(FAM76A, EYA3, DNAJC8, STX12, SMPDL3B, PPP1R8, XKR8, PTAFR, RPA2, SCARNA1, SESN2, ATPIF1, THEMIS2) 0.326600223711764 8 0.0276479784846147 0.827272465741219 881 0.208453781661176 3 2 1 -7.18132561792616 LTS-032 chr1 28586228 28586247 20 * SESN2 NA 0 NA 0.9 1 NA NA NA NA NA LTS-032 chr1 28586248 31347399 2761152 * c(MATN1-AS1, MIR4420, PTPRU, GMEB1, RCC1, RAB42, EPB41, RNU11, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, MED18, TRNAU1AP, SRSF4, PHACTR4, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, LAPTM5, SESN2, SNHG3, SNHG12, SDC3) 0.358203599347324 19 0.0631305618243439 0.922483066143573 1573 0.280644342777755 3 2 1 -6.74637184961551 LTS-032 chr1 31347400 31350566 3167 * SDC3 0.302 1 NA 0.885869682263804 25 0.23912014413958 3 3 0 -5.76445040326482 LTS-032 chr1 31350567 31528265 177699 * c(SNORD103C, SNORD103A, SDC3, PUM1) NA 0 NA 0.923481155081967 185 0.191806286158994 3 NA NA -5.76454277252059 LTS-032 chr1 31528266 31532023 3758 * PUM1 NA 0 NA 0.8 1 NA NA NA NA NA LTS-032 chr1 31532024 32267338 735315 * c(MIR4254, COL16A1, LINC01225, FABP3, LINC01226, HCRTR1, SERINC2, ZCCHC17, PEF1, ADGRB2, TINAGL1, NKAIN1, SPOCD1, SNRNP40, PUM1) 0.237778666665682 19 0.0425592122778089 0.79696033684922 1145 0.239858671231162 4 3 1 -8.08047155813406 LTS-032 chr1 32267339 33474492 1207154 * c(FAM229A, KHDRBS1, TMEM54, RNF19B, DCDC2B, TXLNA, AK2, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, CCDC28B, PTP4A2, SYNC, TSSK3, FAM167B, YARS, EIF3I, SPOCD1) 0.257540499216662 13 0.0922626546111558 0.737745404887672 2039 0.1876841936534 3 2 1 -8.11599137288469 LTS-032 chr1 33474493 33476292 1800 * AK2 0.492 1 NA 0.862531799280154 44 0.154572601769392 3 3 0 -5.76458107337794 LTS-032 chr1 33476293 33502343 26051 * AK2 NA 0 NA 0.840532106128746 60 0.205447231599142 3 NA NA -5.76723423160147 LTS-032 chr1 33502344 33502443 100 * AK2 NA 0 NA 1.054 1 NA NA NA NA NA LTS-032 chr1 33502444 35250380 1747937 * c(MIR3605, AZIN2, CSMD2, GJB4, HMGB4, A3GALT2, ZNF362, PHC2, AK2, GJB3, GJB5, CSMD2-AS1, TRIM62, ZSCAN20, C1orf94) 0.284367505486222 16 0.121940354272078 0.979542333376645 1153 0.372460957200138 3 2 1 -6.92959433066488 LTS-032 chr1 35250381 43885575 8635195 * c(LOC100129924, NFYC-AS1, MIR4255, MIR3659, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, MED8, SMIM12, ERMAP, TMCO2, ZNF684, C1orf122, OSCP1, C1orf216, TMEM125, COL8A2, COL9A2, CSF3R, MANEAL, CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, AGO3, AGO4, SLFNL1, FHL3, FOXJ3, SCMH1, NCDN, SZT2, MACF1, MYCBP, HEYL, AGO1, GJA4, GJB3, TRAPPC3, TEKT2, RSPO1, EPHA10, NA NA NA NA NA NA NA NA NA LTS-032 RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, TFAP2E, ZFP69, BMP8A, INPP5B, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, PPT1, MAP7D1, PSMB2, DLGAP3, HIVEP3, RLF, CLSPN, OXCT2, RRAGC, P3H1, SFPQ, KIAA0754, SMAP2, MEAF6, EXO5, ELOVL1, MRPS15, SLC2A1, ZFP69B, LOC653160, BMP8B, SNORA55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TIE1, LINC01137, PPIEL, CCDC30, DNALI1, C1orf50, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, PABPC4, KCNQ4, ZMYM4, ZMYM6, RIMS3, CDC20, THRAP3) 0.335555529416806 143 0.0772963256183775 0.906142590225734 10290 0.228176150495188 3 2 1 -6.7659351733752 LTS-032 NA NA NA NA LTS-032 chr1 43885576 43885839 264 * SZT2 NA 0 NA 1.241 1 NA NA NA NA NA LTS-032 chr1 43885840 44087725 201886 * c(SZT2, PTPRF, HYI) 0.330256895330668 12 0.053130770631328 1.03809908650078 593 0.224155848413788 3 2 1 -6.84366156678106 LTS-032 chr1 44087726 44087802 77 * PTPRF NA 0 NA 0.76 1 NA NA NA NA NA LTS-032 chr1 44087803 57756830 13669028 * c(EFCAB14-AS1, KDM4A-AS1, MIR761, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR5584, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, KIF2C, FAF1, KTI12, TOE1, OSBPL9, LRRC42, PLK3, CCDC163, DMBX1, TCEANC2, PODN, KLF17, CPT2, KNCN, MOB3C, GLIS1, CCDC24, BTBD19, CCDC17, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, DHCR24, DIO1, DPH2, ELAVL4, C1orf168, TMEM61, CYP4Z1, NA NA NA NA NA NA NA NA NA LTS-032 CDCP2, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, SSBP3, PCSK9, PARS2, MMACHC, ACOT11, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, GPX7, FAM151A, C1orf228, TCTEX1D4, FAM159A, IPP, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, LINC01144, MAGOH, ZYG11A, MUTYH, NASP, NRDC, ORC1, PRDX1, TXNDC12, TMEM69, MRPL37, HSPB11, CMPK1, ATP6V0B, LURAP1, YIPF1, SPATA6, C1orf123, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TTC22, RNF220, ECHDC2, POMGNT1, PRKAA2, NDC1, DMAP1, ZSWIM5, PTPRF, RAB3B, GPBP1L1, CYB5RL, RPS8, SCP2, DMRTB1, DMRTA2, ATPAF1, ST3GAL3, STIL, SLC1A7, COA7, SLC6A9, TAL1, TTC4, RPS15AP10, FAAHP1, C8A, C8B, UQCRH, UROD, LRP8, BSND, ERI3, TMEM53, HECTD3, BEND5, ZYG11B, RAD54L, FOXD2-AS1, HPDL, AGBL4, PRPF38A, PIK3R3, MKNK1, PLPP3, PTCH2, B4GALT2, EIF2B3, ARTN, BTF3L4, ZFYVE9, SNORD46, SNORD38A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SNORD38B, TMEM59, IPO13, KDM4A, EFCAB14) 0.33669284095925 244 0.0829151339179915 0.933008409778936 12377 0.246317575849612 3 2 1 -6.78521392132673 LTS-032 NA NA NA NA LTS-032 chr1 58939473 59096250 156778 * c(OMA1, DAB1, TACSTD2) 0.417986230016939 8 0.144273982903561 0.687357650396092 119 0.254848033730406 2 1 1 -6.74705588568323 LTS-032 chr1 59096251 59364918 268668 * c(LINC01135, MYSM1, JUN) 0.137 1 NA 0.623353919607002 301 0.165803135811604 2 2 0 -5.76920141053364 LTS-032 chr1 59364919 65325970 5961052 * c(LINC01135, MIR4794, MIR4711, PATJ, C1orf87, UBE2U, CYP2J2, KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, RAVER2, FGGY, CACHD1, HSD52, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7) 0.0615971967952723 51 0.0298464698868372 0.679136800879158 2645 0.207796238693622 2 2 0 -7.0394482957557 LTS-032 chr1 65325971 65523343 197373 * JAK1 0.049 1 NA 0.693573373177283 45 0.17840335074083 2 2 0 -5.78704660053554 LTS-032 chr1 65523344 66083729 560386 * c(MIR3671, AK4, LEPR, MIR101-1, LEPROT, DNAJC6) 0.081992863780114 6 0.0530157209388561 0.651659353409516 454 0.188105455846142 2 2 0 -6.76570858121178 LTS-032 chr1 66083730 66085583 1854 * LEPR NA 0 NA 0.442 1 NA NA NA NA NA LTS-032 chr1 66085584 67579386 1493803 * c(INSL5, MIR3117, TCTEX1D1, SLC35D1, LEPR, C1orf141, PDE4B, MIER1, WDR78, SGIP1) 0.0783253123221425 41 0.0545128201524707 0.614774831571573 1256 0.228090526008397 2 2 0 -6.77772287025608 LTS-032 chr1 67579387 67852335 272949 * c(IL23R, IL12RB2, C1orf141) 0.09 1 NA 0.614538034332996 149 0.192077811168446 2 2 0 -5.7725456299711 LTS-032 chr1 67852336 68512069 659734 * c(GNG12-AS1, GADD45A, SERBP1, IL12RB2, GNG12, DIRAS3) 0.0622486063783447 5 0.0465274112755051 0.612841810052661 309 0.183336278580057 2 2 0 -6.7742354115444 LTS-032 chr1 68512070 74705684 6193615 * c(ZRANB2-AS1, GNG12-AS1, MIR1262, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, LRRIQ3, CTH, NEGR1, MIR186, TNNI3K, PIN1P1, LRRC40, DEPDC1, PTGER3, LRRC7, RPE65, WLS, ANKRD13C, FPGT, DIRAS3, SRSF11, ZRANB2) 0.0619771453694513 21 0.0245633292299139 0.66987677509978 1685 0.295769228011353 2 2 0 -6.87602316871548 LTS-032 chr1 74705685 74819807 114123 * c(FPGT-TNNI3K, TNNI3K) NA 0 NA 0.673559321067353 55 0.109681838623838 2 NA NA -5.77797051501451 LTS-032 chr1 74819808 74832915 13108 * c(FPGT-TNNI3K, TNNI3K) NA 0 NA 0.946 1 NA NA NA NA NA LTS-032 chr1 74832916 74838026 5111 * c(FPGT-TNNI3K, TNNI3K) 0.435 1 NA 0.979026046826011 69 0.192281014380122 3 3 0 -5.76476235204467 LTS-032 chr1 74838027 75596564 758538 * c(FPGT-TNNI3K, TYW3, ERICH3, CRYZ, LHX8, TNNI3K) 0.456594463771612 11 0.0423788111721369 1.20997016216018 523 0.277913298976402 4 2 2 -6.90437755482937 LTS-032 chr1 75596565 75602191 5627 * LHX8 NA 0 NA 1.026 1 NA NA NA NA NA LTS-032 chr1 75602192 82456585 6854394 * c(PIGK, IFI44, IFI44L, DNAJB4, ASB17, MGC27382, SLC44A5, USP33, ADGRL2, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, ACADM, MIGA1, LHX8, MSH4, GIPC2, PTGFR, RABGGTB, ADGRL4, SNORD45C, ST6GALNAC5, FUBP1, NEXN) 0.33714405915625 67 0.0854035648135277 0.929248361894459 2381 0.308916486622047 3 2 1 -6.75187894493905 LTS-032 chr1 82456586 82457455 870 * ADGRL2 NA 0 NA 0.917352259143225 20 0.132946724589015 3 NA NA -5.76441013498548 LTS-032 chr1 82457456 84332235 1874780 * c(MIR548AP, ADGRL2) 0.495 1 NA 1.26028838905538 53 0.63035683618795 4 4 0 -5.77290217834254 LTS-032 chr1 84332236 89300411 4968176 * c(LINC01364, MIR4423, MIR548AP, SSX2IP, CLCA1, WDR63, SAMD13, C1orf52, CTBS, CLCA4, LPAR3, DDAH1, MCOLN2, COL24A1, GNG5, LINC01140, CYR61, UOX, LINC01555, SH3GLB1, ZNHIT6, MCOLN3, PRKACB, PKN2, ODF2L, DNASE2B, LOC646626, TTLL7, RPF1, SYDE2, LMO4, BCL10, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.420281245013542 66 0.132136896590466 1.17479854680408 3054 0.351648672245563 4 2 2 -6.74494931871865 LTS-032 chr1 89300412 91381105 2080694 * c(GBP4, GBP5, GBP6, LRRC8B, GBP1, GBP2, GBP3, ZNF326, GTF2B, BARHL2, GBP7, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, PKN2, KYAT3, LOC729930, ZNF644, LRRC8C) 0.454870437875484 28 0.0367420581347702 1.09244126215462 1407 0.289397708574076 4 2 2 -7.03944661639157 LTS-032 chr1 91381106 91448004 66899 * ZNF644 NA 0 NA 1.09140291755166 119 0.155961279382325 4 NA NA -5.77747268161318 LTS-032 chr1 91448005 91726287 278283 * ZNF644 NA 0 NA 0.345 1 NA NA NA NA NA LTS-032 chr1 91726288 91727781 1494 * HFM1 0.097 1 NA 0.517467008783111 15 0.139975440022612 2 2 0 -5.76651818731947 LTS-032 chr1 91727782 94471134 2743353 * c(MIR760, LOC100129046, CCDC18-AS1, GLMN, HFM1, DR1, MTF2, KIAA1107, ABCA4, EPHX4, GFI1, SNORA66, GCLM, BTBD8, DNTTIP2, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, BCAR3) 0.0747576433990079 38 0.0284343095102685 0.614934931366781 2238 0.196579873578281 2 2 0 -6.82433548050373 LTS-032 chr1 94471135 94473103 1969 * ABCA4 NA 0 NA 0.813 1 NA NA NA NA NA LTS-032 chr1 94473104 97279855 2806752 * c(TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, ABCA4, RWDD3, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.069012443815458 20 0.0258666112768443 0.677476215986561 1084 0.179605721048183 2 2 0 -6.88606701879155 LTS-032 chr1 97279856 104087716 6807861 * c(LINC01349, LOC100129620, MIR2682, DPYD-AS1, OLFM3, LRRC39, COL11A1, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, S1PR1, EXTL2, SLC35A3, AMY2B, FRRS1, MIR137HG, MIR137, SNX7, DPH5, GPR88, TRMT13, PALMD, RNPC3, PTBP2, MFSD14A, MIR553, LOC729987, VCAM1, CDC14A, RTCA, DNAJA1P5, PLPPR4) 0.0635434492893895 36 0.0339297593776993 0.625150796009052 2472 0.183609311349554 2 2 0 -6.83408700580986 LTS-032 chr1 104087717 104257593 169877 * c(AMY2A, AMY2B, RNPC3, ACTG1P4) NA 0 NA 0.611388262987968 49 0.515116072382925 2 NA NA -5.76529423586845 LTS-032 chr1 104257594 104297223 39630 * character(0) NA 0 NA 1.776 1 NA NA NA NA NA LTS-032 chr1 107599259 117150966 9551708 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, MAB21L3, ATXN7L2, C1orf194, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, NBPF4, CHIAP2, DENND2C, FNDC7, UBL4B, CELSR2, HIPK1, NTNG1, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, NA NA NA NA NA NA NA NA NA LTS-032 GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, IGSF3, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, PRPF38B, PRMT6, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, RBM15, DCLRE1B, NBPF6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, VANGL1, CAPZA1, GPR61, PROK1, CASQ2, PSRC1, ATP1A1-AS1, STRIP1, SLC16A4, CD53, CD58, LRIG2) 0.339025845215532 182 0.0695078189497343 0.901823337285315 10034 0.279235030944069 3 2 1 -6.76649907759384 LTS-032 NA NA NA NA LTS-032 chr1 117150967 117156459 5493 * IGSF3 0.416 1 NA 1.05748971162583 3 0.306243911504104 4 4 0 -5.76492140341997 LTS-032 chr1 117156460 117311860 155401 * c(MIR320B1, IGSF3, CD2) 0.382 1 NA 0.882638333216461 99 0.154203526155761 3 3 0 -5.77020748329253 LTS-032 chr1 117311861 117944991 633131 * c(MIR942, MAN1A2, PTGFRN, VTCN1, TRIM45, TTF2, CD101) 0.4416966801603 11 0.144053336082035 1.19834649476355 567 0.826861960601755 4 2 2 -6.73488862670759 LTS-032 chr1 117944992 118455238 510247 * c(MAN1A2, GDAP2, FAM46C) 0.382651983004128 7 0.0460682723171351 1.36739521781054 447 0.305353418345372 5 3 2 -6.8416006703092 LTS-032 chr1 118455239 120468201 2012963 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, LINC00622, TBX15, REG4, ZNF697) 0.43704341917996 24 0.0997425671924727 1.15105608032793 1333 0.367396150807514 4 2 2 -6.74518284744746 LTS-032 chr1 120468202 120512455 44254 * NOTCH2 NA 0 NA 1.2842029729981 123 0.256530816815465 4 NA NA -5.76659531631376 LTS-032 chr1 120512456 120529503 17048 * NOTCH2 NA 0 NA 0.904 1 NA NA NA NA NA LTS-032 chr1 120529504 120535421 5918 * NOTCH2 0.284 1 NA 0.902809876734121 11 0.14657291080489 3 3 0 -5.76445177060564 LTS-032 chr1 120535422 121116733 581312 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.304638799536817 16 0.0698712804615268 0.966553965932874 195 1.0678543063364 4 3 1 -6.90009410738721 LTS-032 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 1.05217044544901 59 0.245591544839296 4 NA NA -5.79517531825866 LTS-032 chr1 143912360 144013853 101494 * FAM72D 0.243 1 NA 1.00720872655961 5 0.325043074068653 3 3 0 -5.76945043238897 LTS-032 chr1 144013854 145075854 1062001 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.383571791532441 58 0.0858121039299424 1.07557600097662 528 0.329455851075554 3 2 1 -6.97400787200033 LTS-032 chr1 145075855 145075903 49 * c(NBPF20, PDE4DIP) 0.275 1 NA 0.999437129779498 3 0.170035290454658 3 3 0 -5.76441746898142 LTS-032 chr1 145075904 145285310 209407 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.286089153667005 24 0.0986746593903273 1.10319431056582 222 1.17135674395175 4 3 1 -6.75187719398936 LTS-032 chr1 145285311 145457257 171947 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL, POLR3GL) NA 0 NA 0.9939858755595 166 0.203984275983432 3 NA NA -5.78037020356536 LTS-032 chr1 145457258 145500801 43544 * c(NBPF10, NBPF20, LIX1L, ANKRD34A, POLR3GL) 0.446 1 NA 1.21286912661538 141 0.241960826248182 4 4 0 -5.76453098928847 LTS-032 chr1 145500802 152275555 6774754 * c(LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, RIIAD1, THEM5, NBPF15, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, NA NA NA NA NA NA NA NA NA LTS-032 LINGO4, LINC01138, LOC388692, LYSMD1, HRNR, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, ITGA10, PEX11B, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.423552341968543 98 0.0963360768416553 1.15494914518773 7456 1.34776044155182 4 2 2 -6.74203974051438 LTS-032 NA NA NA NA LTS-032 chr1 152275556 152281690 6135 * FLG 0.414121980514612 12 0.0584380013347479 1.85182958644638 48 0.748317819185564 7 4 3 -6.73754870082521 LTS-032 chr1 152281691 152281699 9 * FLG NA 0 NA 1.27 1 NA NA NA NA NA LTS-032 chr1 152281700 160112207 7830508 * c(MIR190B, C1orf68, MSTO2P, CADM3-AS1, MIR4258, LINC01133, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, CLK2, TDRD10, SHE, OR10J5, DCST2, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRABP2, CRP, S100A16, CREB3L4, LELP1, DCST1, LRRC71, PYHIN1, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, LCE4A, NA NA NA NA NA NA NA NA NA LTS-032 KRTCAP2, CRTC2, ETV3, FCER1A, FDPS, KIAA0907, FLG, SYT11, SMG5, SNAPIN, RUSC1, ACKR1, LCE5A, CFAP45, C1orf43, CHTOP, LCE2B, GBA, GBAP1, OR10J1, SLC39A1, RUSC1-AS1, C1orf204, LAMTOR2, HDGF, APCS, S100A7A, RXFP4, IFI16, OR10R2, FCRL6, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNJ9, KCNJ10, KCNN3, FLG2, C1orf189, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, LOR, MIR9-1, SMCP, MEF2D, MNDA, ETV3L, OR10J3, KPRP, LCE6A, MTX1, MUC1, ATP1A2, NPR1, NTRK1, CRNN, ZBTB7B, RRNAD1, PKLR, DPM3, CRCT1, GON4L, GPATCH4, DUSP23, MSTO1, KIRREL, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, SLAMF8, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, IGSF9, HCN3, CADM3, RAB13, RIT1, HAPLN2, RPS27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, LOC646268, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPTA1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, FCRL2, MRPL24, PAQR6, TRIM46, FLAD1, OR6N2, OR6K2, ISG20L2, FCRL5, FCRL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TAGLN2, TMEM79, LCE3D, ADAM15, AQP10, SLAMF9, SH2D2A, PYGO2, CD1A, CD1B, CD1C, NUP210L, CD1D, CD1E, ARHGEF2, CD5L, MEX3A, PIGM, IGSF8, AIM2, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.441050357610438 250 0.0937674728027971 1.18813533022704 14464 0.319614925767816 4 2 2 -6.73750453691033 LTS-032 NA NA NA NA LTS-032 chr1 160112208 160112660 453 * ATP1A2 0.036 1 NA 1.55611828891069 5 0.500222650426787 5 5 0 -5.76441374145002 LTS-032 chr1 160112661 160210161 97501 * c(ATP1A2, ATP1A4, DCAF8, CASQ1, PEA15) 0.298363114723611 9 0.199890595076407 1.21925188745245 408 0.365422265296951 4 3 1 -6.74629902495834 LTS-032 chr1 160210162 160247185 37024 * c(DCAF8, PEX19) 0.471 1 NA 1.06316915102154 24 0.196049683144017 4 4 0 -5.77208067095244 LTS-032 chr1 160247186 161332632 1085447 * c(TSTD1, MIR5187, SLAMF6, KLHDC9, COPA, ITLN2, FCER1G, NCSTN, ARHGAP30, USP21, APOA2, LY9, MPZ, NDUFS2, SUMO1P3, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, VANGL2, SLAMF7, PEX19, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, CD84, DEDD, ADAMTS4, CD48, NR1I3) 0.459493658265898 67 0.0299848748242684 1.1730899181643 2633 0.301260433952088 4 2 2 -7.14911265131464 LTS-032 chr1 161332633 161332900 268 * SDHC NA 0 NA 0.731 1 NA NA NA NA NA LTS-032 chr1 161332901 161565501 232601 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, SDHC, FCGR2C) 0.426571478529532 10 0.0769008019030578 1.04290397062933 244 0.289971454970019 4 2 2 -6.76806853600284 LTS-032 chr1 161565502 161570491 4990 * FCGR2C 0.213223275202737 2 0.302641702347842 0.652479146982795 40 0.591922445976905 5 4 1 -6.73882484749461 LTS-032 chr1 161570492 172357954 10787463 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-032 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.448463997152223 198 0.05916923902106 1.18388287734633 7088 0.331001060585166 4 2 2 -6.77368256323711 LTS-032 NA NA NA NA LTS-032 chr1 172357955 172376837 18883 * c(DNM3, PIGC) NA 0 NA 1.011 1 NA NA NA NA NA LTS-032 chr1 172376838 175046464 2669627 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.464449786753455 42 0.025576239336209 1.10807107041055 1976 0.317107051949487 4 2 2 -7.5806046915607 LTS-032 chr1 175046465 178888439 3841975 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TNN, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, KIAA0040) 0.461005328835376 38 0.0303569213566396 1.28617945345379 1794 0.930308509122052 4 2 2 -7.19795455324292 LTS-032 chr1 178888440 181548341 2659902 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, IER5, RALGPS2, QSOX1, KIAA1614, TOR3A, SOAT1, CACNA1E, NPHS2, ACBD6, LHX4, XPR1, CEP350, FAM20B) 0.460043462762157 83 0.0342414633696313 1.15044325719418 2847 0.306141194368127 4 2 2 -7.09111185926091 LTS-032 chr1 181548342 181686216 137875 * CACNA1E 0.414 1 NA 1.2890146442736 29 0.39886383900896 4 4 0 -5.76751925154818 LTS-032 chr1 181686217 181773948 87732 * CACNA1E 0.315468283173357 9 0.189051653729286 1.22556534012185 365 0.567555233362672 6 4 2 -6.76466122556148 LTS-032 chr1 181773949 181774271 323 * CACNA1E 0.476 1 NA 1.35220225340587 9 0.16975202502474 5 5 0 -5.7644560700776 LTS-032 chr1 181774272 183520033 1745762 * c(ZNF648, TEDDM1, DHX9, NMNAT2, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, SMG7) 0.442347125057596 46 0.100032489891117 1.16192777332032 1620 0.275603458621893 4 2 2 -6.74714230688114 LTS-032 chr1 183520034 193054088 9534055 * c(GS1-279B7.1, MIR548F1, RNU6-72P, ARPC5, PRG4, IVNS1ABP, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, BRINP3, APOBEC4, RGS21, LOC440704, NCF2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, EDEM3, C1orf21, TRMT1L, HMCN1, SMG7) 0.457919359418166 51 0.0708022820059841 1.08567650417963 3367 0.265520819680336 4 2 2 -7.44934611835832 LTS-032 chr1 193054089 196195147 3141059 * c(MIR1278, KCNT2, GLRX2, TROVE2, CDC73, B3GALT2) 0 1 NA 1.07899519018418 271 0.401353616922274 4 4 0 -5.88031532499361 LTS-032 chr1 196195148 196716667 521520 * c(MIR4735, CFHR4, CFH, KCNT2) 0.462 1 NA 1.12367928476914 314 0.25627492785673 4 4 0 -5.78146971684365 LTS-032 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.556 1 NA NA NA NA NA LTS-032 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.513463770182157 111 0.170381902293033 2 NA NA -5.82267931631949 LTS-032 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.08 1 NA NA NA NA NA LTS-032 chr1 196857130 197032110 174981 * c(CFHR4, F13B, CFHR2, CFHR5) 0.357226843377832 12 0.208349411500794 1.17551611955391 232 0.658275259795894 3 2 1 -6.74883370575733 LTS-032 chr1 197032111 197053373 21263 * c(F13B, ASPM) 0.492 1 NA 1.043741698068 9 0.164325980227649 3 3 0 -5.77228382151304 LTS-032 chr1 197053374 200828562 3775189 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, DDX59, KIF14) 0.457482759328287 18 0.0499091003791252 1.05614196318725 2084 0.252076394753734 4 2 2 -7.35413693479928 LTS-032 chr1 200828563 201845903 1017341 * c(MIR1231, MIR5191, CSRP1, KIF21B, CAMSAP2, PHLDA3, TMEM9, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1) 0.444212506841077 39 0.0425996014756469 1.20182561767762 1827 0.291212226703565 4 2 2 -6.76972805827318 LTS-032 chr1 201845904 216251588 14405685 * c(ZBED6, MIR4260, MIR3122, PCAT6, LINC00538, TIMM17A, LRRN2, CENPF, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, TATDN3, ADORA1, CR1, CR1L, CR2, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, SLC41A1, SYT14, DSTYK, LMOD1, INTS7, NSL1, OPTC, RPS6KC1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, NA NA NA NA NA NA NA NA NA LTS-032 LOC284581, FLVCR1, UBE2T, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, KCNK2, KISS1, TMEM81, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, ADIPOR1, KCTD3, CDK18, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PLXNA2, LAX1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, IPO9, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PTPN7, PTPN14, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, USH2A, SLC30A1, BTG2, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, LPGAT1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ) 0.44671801252833 262 0.0628567947472743 1.13040204571454 13694 0.275506358726708 4 2 2 -7.07312469128005 LTS-032 NA NA NA NA LTS-032 chr1 216251589 218509880 2258292 * c(LINC00210, SPATA17, ESRRG, RRP15, GPATCH2, USH2A) 0.450320041049485 20 0.0416209714345772 1.26272014626166 701 0.413464677430095 4 2 2 -6.85260840282466 LTS-032 chr1 218509881 225555512 7045632 * c(MIR320B2, MIR4742, BPNT1, DUSP10, LYPLAL1, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, RRP15, MARC2, SUSD4, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, AIDA, SNORA36B, AURKAPS1, TGFB2, TLR5, TP53BP2, TGFB2-AS1, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.441182814603342 104 0.0566936257057917 1.11301717669382 3993 0.312561105949323 4 2 2 -6.94527494910942 LTS-032 chr1 225555513 225555602 90 * DNAH14 0.437 1 NA 1.33112885067453 3 0.271275382836949 5 5 0 -5.76441717209699 LTS-032 chr1 225555603 229386237 3830635 * c(NA, MIR3620, MIR4666A, MIR5008, LEFTY1, SNAP47, DNAH14, MRPL55, HIST3H2BB, PARP1, RNF187, SDE2, IBA57, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, LBR, ZNF847P, H3F3AP4, TRIM17, ENAH, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, RHOU, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, TRIM11, HIST3H3, MIXL1, OBSCN, CDC42BPA, WNT3A, HIST3H2A, TMEM63A) 0.327161624442589 9 0.219302746094171 1.12306156682543 4082 0.271614724219223 4 3 1 -6.88699327454131 LTS-032 chr1 229386238 229568632 182395 * c(SPHAR, CCSAP, ACTA1, RAB4A) 0.468 1 NA 1.10353644339981 239 0.26527305573704 4 4 0 -5.77385973314406 LTS-032 chr1 229568633 247486213 17917581 * c(AKT3, LOC100130331, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR3123, MIR3916, LINC01354, LINC01132, ZNF670-ZNF695, MIR4753, MIR4677, MIR4671, MIR4427, ZBTB18, CAPN9, SDCCAG8, CHML, LYST, CHRM3, COX20, WDR64, C1orf131, EDARADD, SLC35F3, B3GALNT2, LINC01341, EXOC8, LOC149373, ADSS, CNST, AGT, PLD5, C1orf100, FH, COG2, RBM34, ABCB10, OPN3, LOC255654, C1orf101, GALNT2, AHCTF1, TAF5L, NA NA NA NA NA NA NA NA NA LTS-032 DISC2, DISC1, GNG4, NA, HNRNPU, LOC339529, LINC01139, IRF2BP2, FAM89A, KCNK1, COA6, C1orf229, LGALS8, TRIM67, MAP1LC3C, MTR, NID1, DESI2, SCCPDH, ARID4B, EGLN1, MAP10, KIF26B, HEATR1, NUP133, ERO1B, FMN2, ZNF695, SIPA1L2, ZP4, ACTA1, RGS7, RYR2, TFB2M, GREM2, SNRPD2P2, MT1HL1, RPS7P5, SMYD3, ARV1, SNORA14B, TARBP1, TBCE, GPR137B, TSNAX, LINC01347, ZNF124, TTC13, PGBD5, ZNF669, PCNX2, SPRTN, NTPCR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 EFCAB2, GNPAT, MLK4, ZNF496, C1orf198, KMO, ACTN2, EXO1, ZNF670, GGPS1, TOMM20, URB2, CEP170) 0.443055900755755 263 0.0692313464708392 1.12336469556173 10500 0.299571266861705 4 2 2 -7.1494673909043 LTS-032 NA NA NA NA LTS-032 chr1 247486214 247581457 95244 * c(NLRP3, ZNF496) 0 1 NA 1.37811155151092 29 0.98111518433164 5 5 0 -5.76465172208341 LTS-032 chr1 247581458 248570481 989024 * c(NLRP3, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2W5, OR13G1, OR2L5, OR2G3, OR2G2, OR2C3) 0.404369389565736 24 0.0646999624801092 1.18634340053153 975 0.427421403219445 4 2 2 -6.85397819772295 LTS-032 chr1 248570482 248604490 34009 * character(0) NA 0 NA 0.603 1 NA NA NA NA NA LTS-032 chr1 248604491 249105158 500668 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, LYPD8, SH3BP5L) 0.312999871527103 8 0.14562421060485 1.02179742307494 282 0.805446813134969 3 2 1 -6.77491106493768 LTS-032 chr1 249105159 249214134 108976 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.03682370832285 279 0.223140033064439 3 NA NA -5.78406180149578 LTS-032 chr2 38824 45895 7072 * FAM110C 0.46 1 NA 1.15573305417025 69 0.197627990621007 4 4 0 -5.76451995974955 LTS-032 chr2 45896 24051762 24005867 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, E2F6, CYS1, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, NA NA NA NA NA NA NA NA NA LTS-032 GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, RHOB, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, TRAPPC12, NBAS, CPSF3, ACP1, SNTG2, ATAD2B, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, FAM110C, HS1BP3, LOC645949, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, MYT1L-AS1, VSNL1, PXDN, COLEC11, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, GREB1, LAPTM4A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RNF144A) 0.443767981797214 160 0.0896625083789486 1.19564325562887 8524 0.305152751432515 4 2 2 -6.74130092043565 LTS-032 NA NA NA NA LTS-032 chr2 24051763 24522989 471227 * c(UBXN2A, FKBP1B, PFN4, FAM228B, MFSD2B, ITSN2, SF3B6, ATAD2B, FAM228A, WDCP, TP53I3) 0.343748499508827 19 0.0498183836051436 0.904383278765128 811 0.237312921432664 3 2 1 -6.74074956356711 LTS-032 chr2 24522990 26534505 2011516 * c(MIR1301, RAB10, ADCY3, GAREM2, ADGRF3, DNMT3A, DTNB, EFR3B, HADHA, HADHB, KIF3C, PTRHD1, ITSN2, DNAJC27, POMC, ASXL2, DNAJC27-AS1, CENPO, NCOA1) 0.448339097544214 45 0.077040839228885 1.17715863628314 1933 0.309139010376438 4 2 2 -6.75689041828072 LTS-032 chr2 26534506 27547881 1013376 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.442641134251394 43 0.0862283596682333 1.26070266962507 2408 0.345474871823021 4 2 2 -6.75492067311253 LTS-032 chr2 27547882 29001981 1454100 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, KRTCAP3, SLC4A1AP, FOSL2, FTH1P3, IFT172, GCKR, GTF3C2, NRBP1, MPV17, PPM1G, PPP1CB, RBKS, FNDC4, CCDC121, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.468730285527196 25 0.0236390919171331 1.1391588186237 2370 0.238223598489496 4 2 2 -7.85794078220106 LTS-032 chr2 29001982 29004584 2603 * PPP1CB NA 0 NA 1.71 1 NA NA NA NA NA LTS-032 chr2 29004585 29917856 913272 * c(FAM179A, WDR43, ALK, SPDYA, SNORD53, C2orf71, PPP1CB, TRMT61B, SNORD92, CLIP4) 0.38985410635205 32 0.0443002835314599 1.43280291580244 896 0.303032072734794 5 3 2 -6.77318750326098 LTS-032 chr2 29917857 30865405 947549 * c(ALK, LCLAT1, YPEL5, LBH) 0.385587773157616 5 0.200917395961624 1.1485031700238 273 0.25057571933969 4 2 2 -6.78033647091083 LTS-032 chr2 30865406 30866986 1581 * LCLAT1 NA 0 NA 0.495528249034542 40 0.399411547121962 2 NA NA -5.76480592795771 LTS-032 chr2 30866987 31756559 889573 * c(LCLAT1, EHD3, CAPN14, SRD5A2, XDH, GALNT14, CAPN13) 0.461103830428142 17 0.0321641012895543 1.29712614178244 681 0.325534727191407 4 2 2 -7.17471253285573 LTS-032 chr2 31756560 36810473 5053914 * c(LOC100271832, LOC100288911, MIR4765, MYADML, RASGRP3, FAM98A, LINC00486, LTBP1, MEMO1, CRIM1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, YIPF4, DPY30, FEZ2) 0.437634965921913 29 0.0936814774212206 1.16021442977327 1911 0.277722180288294 4 2 2 -6.76459469967867 LTS-032 chr2 36810474 36825304 14831 * FEZ2 NA 0 NA 1.17017335503249 15 0.260843813877376 4 NA NA -5.76445925200969 LTS-032 chr2 36825305 36943396 118092 * c(VIT, FEZ2) NA 0 NA 0.705 1 NA NA NA NA NA LTS-032 chr2 36943397 37152372 208976 * c(VIT, STRN) 0.396 1 NA 0.874730725581476 317 0.175818539599068 3 3 0 -5.7735360483129 LTS-032 chr2 37152373 40340394 3188022 * c(SLC8A1-AS1, ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.336187223495128 26 0.0829780786621475 0.864501393501957 2668 0.225253730255956 3 2 1 -6.87678412939018 LTS-032 chr2 40340395 40340400 6 * c(SLC8A1-AS1, SLC8A1) NA 0 NA 1.453 1 NA NA NA NA NA LTS-032 chr2 40340401 42163072 1822672 * c(SLC8A1-AS1, LOC388942, C2orf91, SLC8A1) 0.325111628088536 5 0.190407983025923 1.24932996941379 149 0.276452090093704 4 3 1 -6.81521191299122 LTS-032 chr2 42163073 42163137 65 * C2orf91 0.486 1 NA 0.977204696316623 3 0.0807279381626956 3 3 0 -5.76443375249854 LTS-032 chr2 42163138 68613644 26450507 * c(SNORA70B, MIR216B, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3682, MIR4434, MIR4778, MIR4432, MIR548AD, MIR5192, ACTR2, LRPPRC, C1D, CCT4, B3GNT2, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, WDR92, PPP1R21, C2orf73, CLHC1, PLEKHH2, AHSA2, COMMD1, PUS10, LINC00309, OXER1, KCNG3, TMEM17, SPRED2, EPAS1, EFEMP1, CEP68, PSME4, EHBP1, RHOQ, HAAO, FSHR, CNRIP1, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, NA NA NA NA NA NA NA NA NA LTS-032 LGALSL, MSH6, FOXN2, LOC339803, C2orf74, LOC339807, PRORSD1P, TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, EPCAM, MDH1, MEIS1, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, VPS54, DYNC2LI1, PEX13, PIGF, BCL11A, PLEK, ETAA1, AFTPH, PPM1B, FANCL, SRBD1, PPP3R1, CCDC88A, PRKCE, KCNK12, PNO1, RPL23AP32, RTN4, PELI1, TTC7A, PPP4R3B, MTA3, RAB1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 REL, RPS27A, THADA, ABCG5, ABCG8, LOC644838, PAPOLG, SIX3, SLC1A4, SLC3A1, SPTBN1, ZFP36L2, MIR559, C1GALT1C1L, MEIS1-AS3, UGP2, VRK2, XPO1, CAMKMT, FBXO11, CALM2, FAM161A, KIAA1841, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, SERTAD2, ACYP2) 0.44150660910365 250 0.0984591506839951 1.16837383529737 11532 0.549067145946208 4 2 2 -6.75974718324673 LTS-032 NA NA NA NA LTS-032 chr2 68613645 68613710 66 * PLEK 0.371 1 NA 0.919 1 NA NA NA NA NA LTS-032 chr2 68613711 68962508 348798 * c(PROKR1, APLF, PLEK, FBXO48, ARHGAP25) 0.373598679906938 7 0.0484006099922207 0.837079922034487 258 0.179904367360409 3 2 1 -6.93747946021814 LTS-032 chr2 68962509 69001917 39409 * ARHGAP25 NA 0 NA 1.004 1 NA NA NA NA NA LTS-032 chr2 69001918 70890201 1888284 * c(SNORA36C, LOC100133985, MIR3126, SNRNP27, ADD2, ASPRV1, GKN2, AAK1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, C2orf42, GKN1, GMCL1, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.44318339151317 42 0.0795680265423954 1.12004969730584 1948 0.281703956304083 4 2 2 -6.79795681671919 LTS-032 chr2 70890202 70890205 4 * ADD2 NA 0 NA 1.234 1 NA NA NA NA NA LTS-032 chr2 70890206 71693845 803640 * c(MPHOSPH10, TEX261, ADD2, CLEC4F, VAX2, ZNF638, FIGLA, PAIP2B, CD207, ATP6V1B1, NAGK, OR7E91P, ANKRD53, DYSF, MCEE) 0.420524291338438 34 0.110151168207139 1.21759016510501 1118 0.30386194842914 4 2 2 -6.74376300334254 LTS-032 chr2 71693846 71747934 54089 * DYSF 0 1 NA 1.33235040609445 59 0.690432874407029 5 5 0 -5.76505806642853 LTS-032 chr2 71747935 73453642 1705708 * c(SMYD5, EMX1, EXOC6B, RAB11FIP5, NOTO, CYP26B1, SPR, DYSF, SFXN5) 0.346143735939673 11 0.21804286484334 1.28469633565692 1084 0.443682146136663 4 3 1 -6.83584807383981 LTS-032 chr2 73453643 73455747 2105 * c(SMYD5, PRADC1) 0.43 1 NA 1.09939838875997 29 0.18330490897729 4 4 0 -5.76466132660329 LTS-032 chr2 73455748 73513476 57729 * c(CCT7, FBXO41, PRADC1) 0.478411895162633 5 0.016379865689315 1.24463086162618 300 0.255351111916014 4 2 2 -9.47106553369849 LTS-032 chr2 73513477 73518078 4602 * EGR4 NA 0 NA 1.014 1 NA NA NA NA NA LTS-032 chr2 73518079 74881727 1363649 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, STAMBP, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, TLX2, C2orf78, BOLA3, C2orf81, TPRKB, AUP1, MOB1A, SLC4A5, RTKN, TTC31, ACTG2, ALMS1, MOGS, INO80B, WDR54, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, NAT8) 0.457572611776405 49 0.0524856394353615 1.12639912607729 2744 0.240834644339254 4 2 2 -6.90094240513895 LTS-032 chr2 74881728 74882302 575 * SEMA4F NA 0 NA 2.199 1 NA NA NA NA NA LTS-032 chr2 74882303 87073921 12191619 * c(SNAR-H, MIR4264, RNF103-CHMP3, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, REG3G, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, HK2, LRRTM1, FUNDC2P2, C2orf68, MAT2A, REG3A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, POLE4, KCMF1, REG1A, REG1B, REG1CP, SFTPB, RMND5A, REEP1, TACR1, SNORD94, GCFC2, RNF103, LRRTM4, CAPG, TCF7L1, EVA1A, ELMOD3, NA NA NA NA NA NA NA NA NA LTS-032 ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.439992758343364 110 0.0731343098191763 1.18825124019143 4248 0.304003030740164 4 2 2 -6.73876519749428 LTS-032 NA NA NA NA LTS-032 chr2 87073922 87073948 27 * c(RMND5A, CD8B) 0 1 NA 1.94579258108068 2 1.35198816562868 7 7 0 -5.76441014677407 LTS-032 chr2 87073949 87131129 57181 * c(ANAPC1P1, RMND5A, CD8B) 0.419 1 NA 1.08737099873569 35 0.230004000695932 4 4 0 -5.7699861902942 LTS-032 chr2 87131130 87156942 25813 * RMND5A NA 0 NA 0.693 1 NA NA NA NA NA LTS-032 chr2 87156943 87400212 243270 * c(LOC285074, RMND5A) 0.350516152597999 2 0.00494974746830584 0.515216936675339 51 0.419138032390379 3 2 1 -7.05157746145364 LTS-032 chr2 87400213 87404256 4044 * RMND5A NA 0 NA 0.034 1 NA NA NA NA NA LTS-032 chr2 87404257 87424347 20091 * RMND5A 0 1 NA 0.213900220988287 62 0.241982596364731 1 1 0 -5.82299402737491 LTS-032 chr2 87424348 87424349 2 * RMND5A NA 0 NA 0.416 1 NA NA NA NA NA LTS-032 chr2 87424350 87426774 2425 * RMND5A NA 0 NA 0.5049207610821 41 0.183274514215631 2 NA NA -5.76688880634415 LTS-032 chr2 87929222 88411305 482084 * c(MIR4780, SMYD1, KRCC1, RMND5A) 0.277514388297513 5 0.119028147931487 1.35220165805832 143 0.441276283965619 4 3 1 -6.75941210130841 LTS-032 chr2 88411306 88411605 300 * SMYD1 0.495 1 NA 1.3963315098552 7 0.47596313382646 5 5 0 -5.76441216693882 LTS-032 chr2 88411606 90024874 1613269 * c(MIR4436A, SMYD1, TEX37, FABP1, RPIA, FOXI3, THNSL2, ANKRD36BP2, EIF2AK3) 0.452379611518003 21 0.0331576321746377 1.19760537399802 649 0.616269758479347 4 2 2 -6.91767853395203 LTS-032 chr2 90024875 90249415 224541 * character(0) 0.246 1 NA 1.55395150032964 83 2.35562857397943 5 5 0 -5.76448707375576 LTS-032 chr2 90249416 91937761 1688346 * LOC654342 0.349352144593458 13 0.0476543376560403 1.46696905304908 82 1.0702517212147 6 4 2 -6.77592891819213 LTS-032 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.41239131261956 16 0.339418620585259 5 NA NA -5.76455201447242 LTS-032 chr2 95537183 95537568 386 * c(TEKT4, LOC442028) 0.079 1 NA 1.5657475673904 7 0.413276282545086 5 5 0 -5.76441564953355 LTS-032 chr2 95537569 95848354 310786 * c(TEKT4, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.262518670286245 9 0.114463968129713 1.27800633428376 283 0.395296712756325 4 3 1 -6.74049550284331 LTS-032 chr2 95848355 95945568 97214 * c(PROM2, ZNF2) 0.481 1 NA 1.28162347848181 93 0.256103351405669 4 4 0 -5.7689651457557 LTS-032 chr2 95945569 103334969 7389401 * c(MIR3127, MIR4772, MIR5696, ACTR1B, TXNDC9, ARID5A, TBC1D8, MGAT4A, CNGA3, NMS, LYG1, MITD1, TRIM43, COX5B, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, LONRF2, DUSP2, VWA3B, CREG2, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, RNF149, STARD7-AS1, KCNIP3, KIAA1211L, IL1R1, INPP4A, ANKRD36, SLC9A4, AFF3, ASTL, NPAS2, COA5, FAHD2A, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, SEMA4C, NA NA NA NA NA NA NA NA NA LTS-032 CNOT11, TMEM127, KANSL3, STARD7, ANKRD36B, RPL31, TRIM43B, SLC9A2, SNORD89, LINC01125, FAHD2CP, RFX8, ZAP70, IL1R2, PDCL3, TSGA10, LMAN2L, MFSD9, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, MAP4K4, CHST10, EIF5B) 0.440581578773026 190 0.0810442704190291 1.17703100400462 7183 0.3070165242351 4 2 2 -6.74595859362942 LTS-032 NA NA NA NA LTS-032 chr2 103334970 105488866 2153897 * c(LOC100287010, LINC01158, TMEM182, LINC01102, LINC01114, POU3F3, MFSD9) NA 0 NA 1.19463754438696 257 0.274385995598347 4 NA NA -5.76443963383659 LTS-032 chr2 105488867 105654319 165453 * character(0) NA 0 NA 0.883 1 NA NA NA NA NA LTS-032 chr2 105654320 105882061 227742 * c(GPR45, MRPS9) 0.375 1 NA 0.979716062419948 117 0.19136553863779 3 3 0 -5.7805601112007 LTS-032 chr2 105882062 137852726 31970665 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, BCL2L11, FAR2P2, SH3RF3-AS1, MIR663B, MIR4265, MIR4267, MIR4266, LOC100499194, MIR3679, LOC100507334, LOC100507600, MIR4783, MIR4782, MIR4784, ACTR3, MERTK, MAP3K2, EDAR, RABL2A, TUBA3E, TUBA3D, LYPD1, RPL23AP7, CNTNAP5, FBLN7, ACMSD, FAM168B, C2orf76, TMEM37, TTL, CKAP2L, CBWD2, LOC150776, WTH3DI, LINC01106, SEPT10, SULT1C2P1, DARS, DBI, CCDC138, C1QL2, FOXD4L1, NA NA NA NA NA NA NA NA NA LTS-032 CFAP221, EN1, AMER3, LINC00116, ERCC3, FHL2, RAB3GAP1, UBXN4, CLASP1, R3HDM1, PSD4, NIFK-AS1, PTPN18, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, LOC285000, MED15P9, PLGLA, RGPD4, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, SH3RF3, GPR148, IL1A, IL1B, IL1RN, INHBB, WASH2P, ZC3H6, DPP10-AS1, LOC389033, LINC01120, LCT, LIMS1, FLJ42351, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, LINC01191, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 FAR2P1, LOC440910, SULT1C3, POTEE, MYO7B, NPHP1, ARHGEF4, INSIG2, MIR4435-2HG, POLR2D, CCDC93, PLEKHB2, STEAP3, ACOXL, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, IL36G, UGGT1, DPP10, EPB41L5, PTPN4, RALB, RANBP2, SLC5A7, SCTR, ANAPC1, SOWAHC, POTEI, CFC1B, RGPD3, POTEJ, MZT2A, FAM138B, PAX8-AS1, SLC20A1, SULT1C2, BUB1, TSN, RGPD8, POTEF, RGPD4-AS1, PAX8, MALL, CXCR4, C2orf49, TMEM185B, SAP130, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MZT2B, MAP3K19, UXS1, SLC35F5, THSD7B, TMEM177, TMEM163, AMMECR1L, ZRANB3, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, SFT2D3, TMEM87B, LINC01101, MARCO, DDX18, CCNT2, CCDC74A, CCDC74B, IMP4, TGFBRAP1, HS6ST1, GCC2) 0.330780804830971 263 0.0708363550097822 0.921189351510156 13822 0.285570873169027 3 2 1 -6.77686535432374 LTS-032 NA NA NA NA LTS-032 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.326 1 NA NA NA NA NA LTS-032 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.353114160466131 13 0.0283564762195472 0.996775006233628 975 0.290677076410382 3 2 1 -6.98215107143038 LTS-032 chr2 143642881 147346242 3703362 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ZEB2) 0.358297550334428 10 0.0613347825915732 0.837033241447331 449 0.227767314360363 3 2 1 -7.0856009599624 LTS-032 chr2 147346243 147596934 250692 * PABPC1P2 NA 0 NA 0.694 1 NA NA NA NA NA LTS-032 chr2 147596935 149240735 1643801 * c(ORC4, MBD5, ACVR2A) 0.268 1 NA 0.632612864417985 281 0.13954527575581 2 2 0 -5.77411288997605 LTS-032 chr2 149240736 165539171 16298436 * c(TANK, LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, TNFAIP6, CACNB4, NA NA NA NA NA NA NA NA NA LTS-032 PKP4, TANC1, ACVR1, KCNH7, NMI, DAPL1, CYTIP, CD302) 0.341899077801749 104 0.0759911794486407 0.91143840864965 7170 0.237441651989444 3 2 1 -6.74530811610477 LTS-032 NA NA NA NA LTS-032 chr2 165539172 165539174 3 * character(0) NA 0 NA 1.267 1 NA NA NA NA NA LTS-032 chr2 165539175 165542581 3407 * COBLL1 NA 0 NA 1.35142616636138 67 0.437658017208799 5 NA NA -5.76448424832379 LTS-032 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.006 1 NA NA NA NA NA LTS-032 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.337843018360424 59 0.0708476481335474 0.937979791571507 3403 0.257766278209588 3 2 1 -6.76959288899628 LTS-032 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.82 1 NA NA NA NA NA LTS-032 chr2 170366321 170592743 226423 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, KLHL23, PHOSPHO2, FASTKD1, PPIG) 0.359342967467924 7 0.0929935993701154 0.794210223198669 431 0.253812690299099 3 2 1 -6.78384567252555 LTS-032 chr2 170592744 170597877 5134 * c(PHOSPHO2-KLHL23, KLHL23) NA 0 NA 0.951 1 NA NA NA NA NA LTS-032 chr2 170597878 183951865 13353988 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, NA NA NA NA NA NA NA NA NA LTS-032 MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, CIR1, TLK1) 0.339313135634032 232 0.0873580676647402 0.888758186325688 10913 0.242388783022973 3 2 1 -6.87328169958234 LTS-032 NA NA NA NA LTS-032 chr2 183951866 190732692 6780827 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.321364529414802 64 0.0531739783560187 0.942234776302334 2969 0.251288531481144 3 2 1 -6.93727969381055 LTS-032 chr2 190732693 190738243 5551 * PMS1 NA 0 NA 0.561 1 NA NA NA NA NA LTS-032 chr2 190738244 193060485 2322242 * c(NEMP2, TMEFF2, HIBCH, MSTN, GLS, INPP1, MYO1B, NAB1, PMS1, MFSD6, NABP1, STAT1, STAT4, C2orf88, SDPR) 0.382749915356964 20 0.0514272864292263 0.878719330486652 1689 0.214908406429348 3 2 1 -7.03565531279911 LTS-032 chr2 196544710 196593086 48377 * SLC39A10 0.478 1 NA 0.564175092713748 60 0.0859025265507168 2 2 0 -5.82851426126557 LTS-032 chr2 196593087 196599600 6514 * SLC39A10 NA 0 NA 0.776 1 NA NA NA NA NA LTS-032 chr2 196599601 198950558 2350958 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.333689689727704 62 0.0779005657818186 0.835009704809818 2306 0.279445696857474 3 2 1 -6.91150504022926 LTS-032 chr2 198950559 201677170 2726612 * c(LOC100507140, TYW5, KCTD18, SATB2-AS1, SGO2, C2orf69, SATB2, SPATS2L, AOX1, AOX2P, FTCDNL1, PLCL1, C2orf47, BZW1) 0.295944316570782 14 0.124437569854159 0.913324018456014 968 0.236259407849953 3 2 1 -6.84079599519455 LTS-032 chr2 201677171 201994361 317191 * c(CLK1, FAM126B, NDUFB3, ORC2, PPIL3, NIF3L1, CFLAR, BZW1) 0.409647865649441 5 0.20646113435705 1.07989855735704 503 0.267641885361226 4 2 2 -6.76743706429319 LTS-032 chr2 201994362 203826688 1832327 * c(SNORD11B, KIAA2012, ICA1L, ALS2CR12, FAM117B, ALS2CR11, NOP58, STRADB, WDR12, ALS2, MPP4, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, SNORD11, SNORD70, SUMO1, CARF, FZD7, CASP8, CASP10, CFLAR) 0.358301964561974 57 0.0488353134996749 0.874486594752164 2483 0.219793450849622 3 2 1 -6.80605541673818 LTS-032 chr2 203826689 242836535 39009847 * c(LOC100129175, PP14571, LOC100130451, LOC100286922, MIR1471, MIR548F2, GCSHP3, BOK-AS1, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, MIR4269, LOC100507443, IDH1-AS1, UBE2F-SCLY, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4777, MIR2467, MIR4775, MIR4440, MIR4786, MIR4776-2, MIR4441, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ARL4C, ABI2, RAMP1, SPEG, LANCL1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, NA NA NA NA NA NA NA NA NA LTS-032 STK11IP, MOGAT1, AGAP1, TWIST2, PARD3B, COL4A3, COL4A4, COL6A3, DIS3L2, NEU4, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, CPO, MDH1B, FBXO36, MTERF4, CPS1, CREB1, AAMP, UBE2F, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, OTOS, COPS9, OR6B3, LOC150935, PKI55, KANSL1L, LINC01107, LOC151174, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, CYP27A1, DAW1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 C2orf57, DES, DTYMK, AGXT, EEF1B2, PIKFYVE, LOC200726, TIGD1, LOC200772, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, PASK, ATG4B, FN1, OBSL1, DNPEP, SH3BP4, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, SNED1, GIGYF2, TRAF3IP1, ABCA12, GBX2, SNORD51, CNPPD1, STK36, GPC1, GPR1, RTP5, UNC80, RUFY4, DUSP28, GPR35, CPS1-IT1, ICOS, GMPPA, HDLBP, AGFG1, ACADL, DNAJB2, HTR2B, ESPNL, IDH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, RBM44, AQP12A, KCNJ13, KLHL30, PLEKHM3, C2orf80, RESP18, C2orf82, OR6B2, DYTN, ASB18, FLJ43879, VWC2L, MIR149, MIR153-1, MIR26B, MAP2, DNAJB3, MYL1, NCL, NDUFA10, ATIC, NDUFS1, SEPT2, NEU2, NPPC, MIR375, SMARCAL1, ANO7, PAX3, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, SERPINE2, PRKAG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, FEV, INO80D, PID1, ATG16L1, PPP1R7, ANKZF1, USP40, HJURP, HES6, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, ACKR3, PSMD1, RNPEPL1, CYP20A1, PTH2R, PTMA, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, SNORD20, RPE, RPL37A, BCS1L, SNORA41, SAG, CCL20, GAL3ST2, TMBIM1, RAB17, RNF25, LOC643387, PRR21, LINC00607, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 LOC646736, PRSS56, COPS7B, RAPH1, NBEAL1, SLC4A3, MRPL44, AQP12B, SNORA75, LOC654841, SLC11A1, BOK, SP100, SPP2, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, D2HGDH, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, TRPM8, ATG9A, MLPH, FAM134A, GLB1L, SPAG16, CHPF, IQCA1, CARF, NHEJ1, FAM124B, TM4SF20, C2orf54, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ILKAP, ITM2C, RHBDD1, ING5, CUL3, PLCD4, MGC16025, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 DGKD, STK16, KLF7, ADAM23, NRP2, PER2, CDK5R2, CNOT9, LRRFIP1, TMEM169, DNER, GPR55, B3GNT7, TRIP12, SP140L, CD28, ECEL1, EIF4E2, TTLL4, HDAC4, FARP2) 0.338161567528976 737 0.0740456169179247 0.926545688077708 29307 0.43682487640854 3 2 1 -6.75834442200579 LTS-032 NA NA NA NA LTS-032 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 0.793333146798134 27 0.373098289105342 3 NA NA -5.78257712859446 LTS-032 chr3 239351 361508 122158 * CHL1 0.349 1 NA 0.877093835786028 9 0.075289072543394 3 3 0 -5.79021686153938 LTS-032 chr3 361509 10369627 10008119 * c(EGOT, GHRLOS, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, ARPC4, TADA3, CHL1, FANCD2OS, IL17RE, CPNE9, CIDECP, CNTN4, FANCD2, THUMPD3, TTLL3, CNTN6, SUMF1, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, GHRL, ARL8B, SETD5, EMC3, BRK1, RAD18, LRRN1, CIDEC, SEC13, SETMAR, MTMR14, NA NA NA NA NA NA NA NA NA LTS-032 VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, EDEM1, TATDN2, SRGAP3) 0.339941141531163 105 0.100192938415963 0.898986858981625 5129 0.241996056007221 3 2 1 -6.77916629368666 LTS-032 NA NA NA NA LTS-032 chr3 10369628 15064785 4695158 * c(MIR885, MKRN2OS, FGD5P1, FGD5-AS1, SLC6A1-AS1, ATG7, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00606, LINC00620, HRH1, TPRXL, ATP2B2, CCDC174, PPARG, TMEM40, RAF1, RPL32, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, VGLL4, IQSEC1) 0.334726985339075 75 0.058823087947469 0.943177553300625 3505 0.245633005891385 3 2 1 -6.80430716733466 LTS-032 chr3 15064786 28502605 13437820 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, BTD, MIR563, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, EOMES, NA NA NA NA NA NA NA NA NA LTS-032 EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.347621919478638 57 0.0779853747293632 0.86691231039411 4562 0.221736329011518 3 2 1 -7.21490591667726 LTS-032 NA NA NA NA LTS-032 chr3 28502606 28520304 17699 * ZCWPW2 NA 0 NA 1.529 1 NA NA NA NA NA LTS-032 chr3 28520305 32491018 3970714 * c(OSBPL10-AS1, CMTM7, OSBPL10, ZCWPW2, CMTM8, STT3B, GPD1L, RBMS3, GADL1, ZNF860, LINC00693, TGFBR2) 0.335306677924143 39 0.0654448805382359 0.94270045198471 993 0.889248167869842 3 2 1 -6.76152428286092 LTS-032 chr3 32491019 33458381 967363 * c(CRTAP, CMTM7, CCR4, TRIM71, FBXL2, CNOT10, SUSD5, GLB1, DYNC1LI1, CMTM6, TMPPE, UBP1) 0.438329773777202 20 0.045003245496999 0.640128854765931 1023 0.147251288162345 2 1 1 -6.73948300542226 LTS-032 chr3 33458382 33467056 8675 * UBP1 NA 0 NA 0.793 1 NA NA NA NA NA LTS-032 chr3 33467057 42784582 9317526 * c(ACVR2B-AS1, PDCD6IP, CCDC13-AS1, CTDSPL, EIF1B, ARPP21, SCN11A, CCR8, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, XIRP1, TTC21A, TRAK1, CLASP2, ZNF620, MYRIP, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, STAC, UBP1, VIPR1, DCLK3, NA NA NA NA NA NA NA NA NA LTS-032 CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.336137806314911 154 0.0693693311796358 0.922384537603481 6701 0.295330988696674 3 2 1 -6.75565199407327 LTS-032 NA NA NA NA LTS-032 chr3 42784583 46623760 3839178 * c(KRBOX1, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, ACKR2, TMEM42, CCDC13, CYP8B1, SACM1L, EXOSC7, LARS2, TMEM158, HIGD1A, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, POMGNT2, NA NA NA NA NA NA NA NA NA LTS-032 LIMD1, CCRL2, ZNF502) 0.350634926442938 73 0.0674707699268398 0.870920938861834 4485 0.251268446815739 3 2 1 -6.82983093242403 LTS-032 NA NA NA NA LTS-032 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 1.022 1 NA NA NA NA NA LTS-032 chr3 46623907 47734805 1110899 * c(NRADDP, LOC100132146, PRSS46, CSPG5, CCDC12, SCAP, NBEAL2, KLHL18, ALS2CL, TMIE, PTPN23, KIF9-AS1, SETD2, PRSS50, PRSS42, PRSS45, MYL3, ELP6, PTH1R, KIF9, SMARCC1, TDGF1) 0.370566792164569 11 0.0574301156347276 0.944937371713786 1958 0.206548024647028 3 2 1 -6.83008029364865 LTS-032 chr3 47734806 47742668 7863 * SMARCC1 NA 0 NA 0.839 1 NA NA NA NA NA LTS-032 chr3 47742669 48754798 1012130 * c(MIR1226, MIR711, MIR4793, MIR4443, NME6, TREX1, COL7A1, CELSR3, DHX30, FBXW12, MAP4, TMEM89, SHISA5, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLXNB1, SPINK8, SLC26A6, SMARCC1, UQCRC1, CCDC51, CAMP, ATRIP, UCN2, CDC25A) 0.357666990969052 34 0.089435310074137 0.859964197418503 2757 0.188750281176523 3 2 1 -6.80870635591416 LTS-032 chr3 48754799 48783961 29163 * IP6K2 NA 0 NA 0.403 1 NA NA NA NA NA LTS-032 chr3 48783962 48936418 152457 * c(PRKAR2A, SLC25A20) 0.383017340516473 3 0.094732958010047 0.45239301863061 218 0.114275098067356 2 1 1 -7.65150688955997 LTS-032 chr3 48936419 48955497 19079 * c(ARIH2OS, SLC25A20) NA 0 NA 0.609 1 NA NA NA NA NA LTS-032 chr3 48955498 49466776 511279 * c(MIR4271, ARIH2, USP19, WDR6, KLHDC8B, LAMB2P1, NDUFAF3, AMT, GPX1, CCDC36, IMPDH2, C3orf62, RHOA, LAMB2, MIR191, MIR425, P4HTM, QRICH1, DALRD3, QARS, ARIH2OS, C3orf84, CCDC71, TCTA, USP4, NICN1) 0.217292007646858 19 0.0740254421254702 0.702859914930749 1760 0.157565023571404 2 2 0 -8.58344985204186 LTS-032 chr3 49466777 49547747 80971 * DAG1 NA 0 NA 1.16 1 NA NA NA NA NA LTS-032 chr3 49547748 56649322 7101575 * c(SNORD19B, LINC00696, BSN-AS2, PARP3, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, NISCH, TUSC2, TWF2, CISH, GPR62, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, ALAS1, RAD54L2, STAB1, NAT6, ABHD14A, POC1A, DNAH1, ERC2, GNL3, GNAI2, GNAT1, CCDC66, SPCS1, GRM2, RBM15B, GMPPB, APEH, HYAL1, ITIH1, NA NA NA NA NA NA NA NA NA LTS-032 ITIH3, ITIH4, TMEM110, AMIGO3, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, IQCF3, MIRLET7G, MIR135A1, IQCF6, SMIM4, MST1, MST1R, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, TLR9, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, RPL29, RNF123, SEMA3F, NT5DC2, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, TNNC1, UBA7, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, CAMKV, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ESRG, WDR82, BAP1, HYAL3, MON1A, ABHD14B, HYAL2, BSN, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1) 0.328061281562407 154 0.0776344462784413 0.917652652862865 9712 0.219357622424021 3 2 1 -6.77647110618015 LTS-032 NA NA NA NA LTS-032 chr3 56649323 56649911 589 * CCDC66 NA 0 NA 0.629 1 NA NA NA NA NA LTS-032 chr3 56649912 56763001 113090 * c(FAM208A, CCDC66, ARHGEF3) 0.336317186573847 10 0.0923376051960052 0.744521560751452 281 0.165790727662163 3 2 1 -6.84995160943496 LTS-032 chr3 56763002 56763007 6 * ARHGEF3 NA 0 NA 0.931 1 NA NA NA NA NA LTS-032 chr3 56763008 58923525 2160518 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.354656191731177 43 0.0797019711688168 0.889645904835451 2681 0.236427905977257 3 2 1 -6.75760823481769 LTS-032 chr3 58923526 59025208 101683 * C3orf67 NA 0 NA 0.95 1 NA NA NA NA NA LTS-032 chr3 59025209 66396834 7371626 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.328786834826572 35 0.0493948590527429 0.98998458240363 1882 0.251222798716669 3 2 1 -7.21464470562526 LTS-032 chr3 66396835 74413676 8016842 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.333435794507512 65 0.0545941758657601 0.907908790145627 2569 0.257382720173533 3 2 1 -6.78914907147271 LTS-032 chr3 74413677 74570331 156655 * CNTN3 NA 0 NA 0.955412209441296 45 0.241818865344215 3 NA NA -5.76707907902538 LTS-032 chr3 75263493 75679988 416496 * c(MIR1324, FAM86DP) 0.282 1 NA 1.74407980739277 7 1.12104649238791 6 6 0 -5.76441016045104 LTS-032 chr3 75679989 75785339 105351 * c(ZNF717, MIR1324) 0.344495956733921 70 0.100626838678982 1.53836261899386 163 0.87588802152536 6 4 2 -6.7348823586744 LTS-032 chr3 75785340 75785351 12 * ZNF717 0.464 1 NA 0.833919769625961 3 0.220130264464779 3 3 0 -5.76441137030146 LTS-032 chr3 75785352 75785398 47 * ZNF717 0.349143431062248 3 0.0725901738070197 1.30969948026135 3 0.212509607625946 3 2 1 -6.73310891071044 LTS-032 chr3 75785399 75785442 44 * ZNF717 0.434 1 NA 0.970352002030902 2 0.51194530957906 3 3 0 -5.76441044638565 LTS-032 chr3 75785443 75790878 5436 * ZNF717 0.394238871256588 72 0.0773917488211922 0.744872486867844 182 0.323771876772734 5 3 2 -6.75166079647142 LTS-032 chr3 75790879 87313540 11522662 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, VGLL3, LINC00971, POU1F1, ROBO1, ROBO2) 0.350041080255385 17 0.109133081197979 0.964477996243597 1013 0.232317881677269 3 2 1 -7.03969889669542 LTS-032 chr3 87313541 88207114 893574 * c(C3orf38, HTR1F, POU1F1, ZNF654, CGGBP1) NA 0 NA 0.871636010738353 411 0.246417363795633 3 NA NA -5.78730015507757 LTS-032 chr3 89156549 90283666 1127118 * EPHA3 NA 0 NA 1.22047122830023 201 0.286594366301956 4 NA NA -5.76865170075798 LTS-032 chr3 93591838 93692511 100674 * PROS1 0.482 1 NA 1.20150220898846 87 0.370637068673232 4 4 0 -5.76443193175381 LTS-032 chr3 93692512 122599330 28906819 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, HHLA2, FSTL1, FILIP1L, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, ARL13B, DHFR2, GABRR3, TIGIT, USF3, NA NA NA NA NA NA NA NA NA LTS-032 ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, FAM162A, ZBTB11, MORC1, GOLGB1, GPR15, TUSC7, LINC00636, EPHA6, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, LNP1, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, STX19, CD200, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, EAF2, PROS1, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, OR5AC2, PARP9, ARL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CMSS1, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.45050429133126 272 0.0589387127050536 1.14103489185593 14424 0.353279675807078 4 2 2 -7.04579128724966 LTS-032 NA NA NA NA LTS-032 chr3 122599331 124303525 1704195 * c(LOC100129550, MYLK-AS1, MIR5002, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, ROPN1, CCDC14, DIRC2, KALRN) 0.462565625473076 26 0.0329814866483981 1.25281875809927 1507 0.320530987205036 4 2 2 -7.18429810949509 LTS-032 chr3 124303526 125725269 1421744 * c(FAM86JP, MIR548I1, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, SLC41A3, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.459061519055281 30 0.042391389279634 1.12894114809083 1326 0.263026848043636 4 2 2 -6.97784519329936 LTS-032 chr3 125725270 141011208 15285939 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, NA NA NA NA NA NA NA NA NA LTS-032 PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, MCM2, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, HMCES, MRPS22, ISY1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, LOC653712, SLCO2A1, TMEM108, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, CNBP, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.45005761518162 176 0.0794415408277742 1.20393510000504 10670 0.33551088933558 4 2 2 -6.76504497609873 LTS-032 NA NA NA NA LTS-032 chr3 141011209 161063504 20052296 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, NA NA NA NA NA NA NA NA NA LTS-032 TRIM59, GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, IQCJ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 HLTF, SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.456941138316378 176 0.0676574834363137 1.15255709257347 10018 0.480821557765005 4 2 2 -6.86448703322955 LTS-032 NA NA NA NA LTS-032 chr3 161063505 161147419 83915 * c(LOC101243545, SPTSSB) NA 0 NA 1.14756932169004 31 0.134580758822208 4 NA NA -5.76861060861968 LTS-032 chr3 161147420 161214630 67211 * c(LOC101243545, OTOL1) NA 0 NA 1.67 1 NA NA NA NA NA LTS-032 chr3 161214631 161216912 2282 * OTOL1 0.411 1 NA 1.52016857866774 9 0.220805784445165 5 5 0 -5.76444318653036 LTS-032 chr3 161216913 164700734 3483822 * c(OTOL1, LINC01192, SI) 0.260941790235133 9 0.203320423087413 1.53013272695165 65 0.431166698755116 5 4 1 -6.77790461115204 LTS-032 chr3 164700735 164714296 13562 * SI 0.429 1 NA 1.54363545466193 23 0.944002284029527 5 5 0 -5.76443262716064 LTS-032 chr3 164714297 168802510 4088214 * c(PDCD10, WDR49, MECOM, SLITRK3, GOLIM4, SERPINI1, SERPINI2, BCHE, LINC01330, SI, MIR551B, ZBBX, EGFEM1P) 0.378993788514625 19 0.0623414011103188 1.52378911045853 911 0.390237883634859 5 3 2 -6.82722391580818 LTS-032 chr3 168802511 168802587 77 * MECOM NA 0 NA 1.74 1 NA NA NA NA NA LTS-032 chr3 168802588 180365956 11563369 * c(LOC100128164, LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, TTC14, LRRC34, ECT2, RPL22L1, MECOM, NLGN1, TNIK, NAALADL2, GHSR, GPR160, KCNMB3, CCDC39, LRRIQ4, SAMD7, TMEM212, NDUFB5, CLDN11, ZNF639, PEX5L, PIK3CA, PLD1, MFN1, PRKCI, MYNN, EIF5A2, MRPL47, NCEH1, SLC7A14, GNB4, ZMAT3, FNDC3B, SKIL, SLC2A2, MIR569, TERC, SEC62, TBL1XR1, LRRC31, PHC3, SPATA16, ACTRT3, ACTL6A, TNFSF10, USP13) 0.34036514432657 82 0.0703315726499289 1.68960626903968 4919 0.5029634875773 6 4 2 -6.76128743572657 LTS-032 chr3 180365957 180369986 4030 * CCDC39 0 1 NA 1.6303108899993 8 1.14039927218497 6 6 0 -5.76441868346007 LTS-032 chr3 180369987 195306436 14936450 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, MIR1224, LINC00888, TMEM44-AS1, LOC100507391, ABCC5, MIR5692C1, OPA1-AS1, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, ALG3, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, HTR3C, DVL3, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, EPHB3, ETV5, FGF12, MCF2L2, ATP11B, NA NA NA NA NA NA NA NA NA LTS-032 VPS8, ACAP2, LOC253573, UTS2B, FETUB, LAMP3, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, CCDC39, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, SOX2-OT, IL1RAP, KNG1, FLJ46066, FLJ42393, LINC00884, LPP, OPA1, DNAJB11, DCUN1D1, POLR2H, KLHL24, PPP1R2, TBCCD1, P3H2, ABCF3, LSG1, PARL, YEATS2, MASP1, MCCC1, PSMD2, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 GMNC, LOC647323, ST6GAL1, SOX2, SST, SNORA81, SNORD66, THPO, ATP13A3, MAP6D1, FXR1, B3GNT5, ATP13A4, MGC2889, TP63, CHRD, EIF2B5, KLHL6, VWA5B2, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ, CAMK2N2, ECE2) 0.315781318095178 239 0.0724671256559366 1.7263315549838 10408 0.543547960784959 6 4 2 -6.81081298720176 LTS-032 NA NA NA NA LTS-032 chr3 195306437 195345045 38609 * APOD NA 0 NA 3.987 1 NA NA NA NA NA LTS-032 chr3 195345046 195451749 106704 * c(MUC20, MIR570, SDHAP2) 0.347127075375076 10 0.116096176604668 2.37119134000779 98 1.03523804951656 9 6 3 -6.73654997794354 LTS-032 chr3 195451750 195451810 61 * MUC20 0.272 1 NA 4.512 1 NA NA NA NA NA LTS-032 chr3 195451811 195475926 24116 * c(MUC20, MUC4) 0.326863121806681 10 0.0994266340351294 3.26573540366939 90 2.70110356796882 19 13 6 -6.73751523436471 LTS-032 chr3 195475927 195475989 63 * MUC4 0.452 1 NA 1.695 1 NA NA NA NA NA LTS-032 chr3 195475990 195964327 488338 * c(TNK2, ZDHHC19, SLC51A, SDHAP1, LINC00885, MUC4, TFRC) 0.299300750610231 29 0.0945952747754993 1.76060434158147 713 0.485191093246426 7 5 2 -6.75766298699418 LTS-032 chr3 195964328 197616381 1652054 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, NCBP2-AS2, RNF168, DLG1, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, RUBCN) 0.297613253877227 24 0.0872652025707277 1.5926083973653 2214 0.375218180976119 6 4 2 -6.93879170304075 LTS-032 chr3 197616382 197770512 154131 * c(RPL35A, IQCG, LMLN) NA 0 NA 1.65165088136591 261 0.384379436984831 6 NA NA -5.76629002645644 LTS-032 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.193 1 NA 0.89789027041317 14 0.22161387319211 3 3 0 -5.76444996422729 LTS-032 chr4 60336 3372183 3311848 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, NA NA NA NA NA NA NA NA NA LTS-032 TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.438844981405722 130 0.0915500029554609 0.646726872627703 5552 0.17878456302478 2 1 1 -6.73911448508593 LTS-032 NA NA NA NA LTS-032 chr4 3372184 3388020 15837 * RGS12 NA 0 NA 1.242 1 NA NA NA NA NA LTS-032 chr4 3388021 3769192 381172 * c(LOC100133461, ADRA2C, DOK7, LINC00955, HGFAC, LRPAP1, RGS12) 0.438104577941199 52 0.0768501779384436 0.769855645414928 518 0.280063291625913 2 1 1 -6.83056738505766 LTS-032 chr4 3769193 25749160 21979968 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, NA NA NA NA NA NA NA NA NA LTS-032 FBXL5, NSG1, FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, FAM86EP, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.432638547953326 179 0.0914063322178423 0.670316960643512 8709 0.178970531851821 2 1 1 -7.44114297118173 LTS-032 NA NA NA NA LTS-032 chr4 25749161 25749234 74 * SEL1L3 NA 0 NA 0.445 1 NA NA NA NA NA LTS-032 chr4 25749235 41015899 15266665 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, SEL1L3, PDS5A, UBE2K, APBB2, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, FAM114A1) 0.447829276986789 112 0.0557987851486654 0.62306819656924 4252 0.594091167743878 2 1 1 -6.79308294750062 LTS-032 chr4 41015900 41035370 19471 * APBB2 NA 0 NA 0.624091090219318 17 0.0887122330578914 2 NA NA -5.76552552132737 LTS-032 chr4 41035371 41258874 223504 * c(UCHL1-AS1, APBB2) NA 0 NA 0.959 1 NA NA NA NA NA LTS-032 chr4 41258875 41259633 759 * UCHL1 0.312 1 NA 0.992110175437797 7 0.287333388575843 3 3 0 -5.76444403631348 LTS-032 chr4 41259634 49063872 7804239 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, LIMCH1, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, UCHL1, CWH43, PHOX2B) 0.326211999294505 124 0.0896074854151916 0.923298589139743 4194 0.296761599403833 3 2 1 -6.77395365732559 LTS-032 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.905661680288233 5 0.0491548573388226 3 NA NA -5.76441953537349 LTS-032 chr4 52709193 52714511 5319 * DCUN1D4 0.265 1 NA 1.06127678858878 17 0.24670302461247 4 4 0 -5.7651284410277 LTS-032 chr4 52714512 53787054 1072543 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, SCFD2, DCUN1D4, LRRC66, DANCR, SGCB, USP46, RASL11B, SNORA26) 0.334476389797577 10 0.0435354261875697 0.958338451617753 701 0.240419836703586 3 2 1 -6.82057529028186 LTS-032 chr4 53787055 53814547 27493 * SCFD2 NA 0 NA 2.141 1 NA NA NA NA NA LTS-032 chr4 53814548 55162271 1347724 * c(LNX1-AS1, LNX1-AS2, SCFD2, GSX2, CHIC2, RPL21P44, PDGFRA, FIP1L1, LNX1) 0.413222729143178 22 0.0300062403322119 1.49020630712442 522 0.315888774294482 5 3 2 -6.83568439072687 LTS-032 chr4 55162272 55164381 2110 * PDGFRA NA 0 NA 1.5694958776861 43 0.621321140011726 5 NA NA -5.76442452032333 LTS-032 chr4 55164382 55524086 359705 * PDGFRA NA 0 NA 0.558 1 NA NA NA NA NA LTS-032 chr4 55524087 55991731 467645 * c(KDR, KIT) 0.062 1 NA 0.671111331455688 329 0.161460101425818 2 2 0 -5.78634284938465 LTS-032 chr4 55991732 68906584 12914853 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, KDR, LOC401134, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.0638846521853795 72 0.0405078457015463 0.638056883316948 3001 0.223568849665503 2 2 0 -6.75121237260102 LTS-032 chr4 68906585 68907637 1053 * UBA6-AS1 NA 0 NA 0.245426576310946 39 0.178771267243656 1 NA NA -5.76754635034302 LTS-032 chr4 68907638 68907643 6 * UBA6-AS1 NA 0 NA 0.7 1 NA NA NA NA NA LTS-032 chr4 68907644 69363297 455654 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.0723642416611647 16 0.0247517676136473 0.653730228543214 409 0.283184895120302 2 2 0 -6.73950735354011 LTS-032 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.323 1 NA NA NA NA NA LTS-032 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.18809883244971 43 0.338494590857619 4 NA NA -5.76442013871729 LTS-032 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.772 1 NA NA NA NA NA LTS-032 chr4 69512574 90035430 20522857 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, NA NA NA NA NA NA NA NA NA LTS-032 EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, PKD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 HNRNPDL) 0.0729149096714261 191 0.0513962416588482 0.638046104948674 12721 0.191796401484695 2 2 0 -6.74428457985247 LTS-032 NA NA NA NA LTS-032 chr4 90035431 90168415 132985 * c(TIGD2, GPRIN3) 0.107132026311419 28 0.0395456169518927 0.451624986805866 100 0.220370159440241 1 1 0 -6.89883015977779 LTS-032 chr4 90168416 90168438 23 * GPRIN3 NA 0 NA 0.621 1 NA NA NA NA NA LTS-032 chr4 90168439 115543942 25375504 * c(MIR1243, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, STPG2-AS1, SEC24B, PDLIM5, CENPE, RRH, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf32, SLC9B2, SLC9B1, SGMS2, EGF, EIF4E, ENPEP, MMRN1, METAP1, NPNT, LOC256880, PPA2, DAPP1, DKK2, HPGDS, RPL34-AS1, GPRIN3, STPG2, ANK2, GRID2, H2AFZ, HADH, CFI, LRIT3, PCNAP1, CCSER1, MANBA, MIR302B, MTTP, ATOH1, NA NA NA NA NA NA NA NA NA LTS-032 NFKB1, CISD2, LEF1, LARP7, PDHA2, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, SMARCAD1, INTS12, OSTC, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, ETNPPL, BMPR1B, SNCA, TACR3, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, UNC5C, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, TRMT10A, TBCK) 0.0734954499560122 177 0.0453598329505352 0.651675379702557 9703 0.234985746119151 2 2 0 -6.80485445056849 LTS-032 NA NA NA NA LTS-032 chr4 115543943 118004972 2461030 * c(MIR1973, TRAM1L1, NDST4, MIR577, UGT8) 0.0576300160087206 3 0.0195021366350801 0.976438293981385 173 0.481412678155729 3 3 0 -6.87308202671662 LTS-032 chr4 118004973 119414553 1409581 * c(SNHG8, TRAM1L1, SNORA24, PRSS12, NDST3) 0.0548177058707901 4 0.0326904675198546 0.713363780235507 360 0.416015499162201 2 2 0 -6.91521517820853 LTS-032 chr4 119414554 119414579 26 * character(0) 0.057 1 NA 0.113 1 NA NA NA NA NA LTS-032 chr4 119414580 119476651 62072 * CEP170P1 0.177189628125838 4 0.0605660796155736 0.454962120804026 143 0.191005401313772 1 1 0 -7.22921033482286 LTS-032 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.709 1 NA NA NA NA NA LTS-032 chr4 119476981 164438475 44961495 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, MIR3688-1, LINC01095, MIR4799, MIR3688-2, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, PRDM5, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, CTSO, ZNF827, SH3D19, MGAT4D, C4orf45, SPATA5, BBS12, DCLK2, FREM3, MMAA, RBM46, SYNPO2, EDNRA, ELF2, C4orf46, TIGD4, TMEM154, ETFDH, FABP2, FGA, FGB, FGF2, FGG, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, NA NA NA NA NA NA NA NA NA LTS-032 GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, GLRB, LINC01091, RNF175, GRIA2, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, ANXA5, LOC340017, PRSS48, IL2, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, NPY1R, NPY2R, NPY5R, FAM198B, MYOZ2, ASIC5, GATB, PLRG1, EXOSC9, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, LARP1B, BBS7, FBXW7, TMEM144, TMA16, MAML3, TMEM184C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PDGFC, FSTL5, ANKRD50, RNF150, PCDH10, FNIP2, METTL14, IL21, RXFP1, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, LOC645513, HHIP-AS1, C4orf51, TDO2, TLR2, TRPC3, CETN4P, FAM160A1, UCP1, NDNF, FAT4, ARHGAP10, MAP9, TNIP3, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, TKTL2, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, FHDC1, PDE5A, INPP4B, CCNA2, SNORD73A, PRMT9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 LRAT, NAF1, RAPGEF2, LRBA, SEC24D) 0.0792869823659083 220 0.0519780701834119 0.64549764097823 15436 0.460343495709758 2 2 0 -6.75699200144649 LTS-032 NA NA NA NA LTS-032 chr4 164438476 165891214 1452739 * c(LINC01207, APELA, FAM218A, ANP32C, TRIM61, MARCH1, TMA16) 0.402 1 NA 0.594528511159432 267 0.214904073433591 2 2 0 -5.87132830383575 LTS-032 chr4 165891215 166159933 268719 * c(KLHL2, TRIM60, TMEM192, TRIM61) 0.281714246213541 11 0.149103197941438 0.677609442700083 211 0.403788539024262 3 2 1 -6.94220547401681 LTS-032 chr4 166159934 166199390 39457 * c(KLHL2, GK3P) 0.084 1 NA 0.599724471971216 15 0.229336828600164 2 2 0 -5.7664445021228 LTS-032 chr4 166199391 187026788 20827398 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, CPE, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, PALLD, CCDC110, FBXO8, GK3P, PDLIM3, GPM6A, LINC01098, SLC25A4, HMGB2, HPGD, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, CLDN22, HPF1, NEIL3, UFSP2, DDX60, CDKN2AIP, NA NA NA NA NA NA NA NA NA LTS-032 TENM3, LRP2BP, STOX2, CFAP97, SH3RF1, SPCS3, TRAPPC11, MSMO1, SLED1, MIR578, TLL1, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.072818403197551 116 0.042589131335894 0.642984533028667 6484 0.264539661715075 2 2 0 -6.73660431619329 LTS-032 NA NA NA NA LTS-032 chr4 187026789 189061106 2034318 * c(ZFP42, TRIML2, F11, FAT1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, MTNR1A, FLJ38576) 0.0616651799302667 26 0.0203627110179367 0.714211221801089 870 0.288105694333687 2 2 0 -6.9982329815342 LTS-032 chr4 189061107 189660677 599571 * c(TRIML1, LINC01060) NA 0 NA 0.738418170241217 42 0.116049670970685 2 NA NA -6.2520835888166 LTS-032 chr4 189660678 189660773 96 * character(0) 0.403 1 NA 1.38908750933961 5 0.264775376498647 5 5 0 -5.7644126716715 LTS-032 chr4 189660774 189662252 1479 * character(0) NA 0 NA 1.22598589377646 39 0.491159420400661 4 NA NA -5.76441285702193 LTS-032 chr4 189662253 189662278 26 * character(0) NA 0 NA 0.799 1 NA NA NA NA NA LTS-032 chr4 189662279 190878661 1216383 * FRG1 0.303486952443156 9 0.155244967712322 0.647069313587292 87 0.23197410422446 2 1 1 -7.12900439087901 LTS-032 chr4 190878662 190981567 102906 * FRG1 NA 0 NA 0.838063107646902 51 0.932539938271058 3 NA NA -5.76498890581204 LTS-032 chr5 140347 163205 22859 * PLEKHG4B 0.079 1 NA 0.629237448473659 67 0.193510515902398 2 2 0 -5.76454517500897 LTS-032 chr5 163206 741812 578607 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.105556957728699 72 0.0844564874865173 0.658402879547011 1066 0.315382068428338 2 2 0 -6.83963757545946 LTS-032 chr5 741813 745281 3469 * character(0) NA 0 NA 3.137 1 NA NA NA NA NA LTS-032 chr5 745282 796333 51052 * ZDHHC11 0.093419053698896 18 0.118596600266497 1.18595571842489 76 0.866433255343372 2 2 0 -6.77161257277624 LTS-032 chr5 796334 796375 42 * ZDHHC11 NA 0 NA 0.478 1 NA NA NA NA NA LTS-032 chr5 796376 848765 52390 * ZDHHC11 0.0360536574614381 4 0.0200062490237426 0.589242804467276 85 0.61226359686398 4 4 0 -6.7784536889251 LTS-032 chr5 848766 850494 1729 * ZDHHC11 NA 0 NA 0.846 1 NA NA NA NA NA LTS-032 chr5 850495 32101123 31250629 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, PDZD2, FBXL7, ICE1, LINC01018, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, NA NA NA NA NA NA NA NA NA LTS-032 SLC6A18, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, PMCHL1, FAM134B, FAM105A, NSUN2, C5orf22, ANKH, PRDM9, LINC01021, MRPL36, ANKRD33B, SLC6A3, BRD9, SRD5A1, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.0665173244299944 168 0.0293276471161959 0.679853848360435 6998 0.24258802925032 2 2 0 -7.66271149274988 LTS-032 NA NA NA NA LTS-032 chr5 32101124 32101168 45 * PDZD2 0.091 1 NA 0.113 1 NA NA NA NA NA LTS-032 chr5 32101169 44809162 12707994 * c(CCDC152, LOC100132356, MIR3650, EGFLAM-AS2, LOC100506548, LOC100506639, NNT-AS1, EGFLAM-AS4, GDNF-AS1, PAIP1, MRPS30, SUB1, C1QTNF3, MROH2B, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, LOC153684, DAB2, UGT3A2, NIM1K, RANBP3L, FGF10, PDZD2, NNT, TTC33, AMACR, RICTOR, FYB, NIPBL, RAI14, FBXO4, GDNF, GHR, C5orf51, HMGCS1, LOC340113, PLCXD3, IL7R, C5orf34, ANXA2R, LIFR, NPR3, OXCT1, SLC45A2, RXFP3, NA NA NA NA NA NA NA NA NA LTS-032 ZFR, MTMR12, WDR70, BRIX1, PRKAA1, PRLR, CCL28, PTGER4, RAD1, RPL37, SNORD72, GOLPH3, SELENOP, TMEM267, NIPBL-AS1, LOC648987, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, C6, C7, C9, ZNF131, SPEF2, ADAMTS12, CARD6, OSMR, LMBRD2, NUP155) 0.0705700681381211 144 0.0334534432776787 0.641892007729471 8241 0.20155159962675 2 2 0 -6.73327025349314 LTS-032 NA NA NA NA LTS-032 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.72469791351902 149 0.188290979406374 2 NA NA -5.98008613444343 LTS-032 chr5 49692017 52084011 2391995 * c(EMB, ISL1, ITGA1, PELO, LOC642366, PARP8) 0.07 1 NA 0.614341389405174 431 0.18875438215013 2 2 0 -5.83852453794716 LTS-032 chr5 52084012 68862501 16778490 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, FLJ31104, NA NA NA NA NA NA NA NA NA LTS-032 NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, GTF2H2C, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.0710725991419022 135 0.0279680244651286 0.625206551920144 7858 0.232258211958134 2 2 0 -6.85397458604751 LTS-032 NA NA NA NA LTS-032 chr5 68862502 68902891 40390 * GTF2H2C NA 0 NA 0.328 1 NA NA NA NA NA LTS-032 chr5 68902892 69337753 434862 * c(NA, GUSBP3, SERF1A) NA 0 NA 0.265555886736429 9 0.166974382599381 1 NA NA -6.5949580627475 LTS-032 chr5 69337754 70213188 875435 * c(GUSBP9, SMA4, SMA5, LOC441081, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.116445969247474 39 0.254061425303529 0 NA NA -6.26889362472632 LTS-032 chr5 70213189 70247722 34534 * c(GUSBP9, SMN1, SMN2, SERF1A) NA 0 NA 0.352 1 NA NA NA NA NA LTS-032 chr5 70247723 70308722 61000 * c(GUSBP9, NAIP, SMN1, SMN2) 0.105228334688759 2 0.00282842712474619 0.415840776896037 48 0.271609210791028 11 10 1 -8.71549252336744 LTS-032 chr5 70308723 70751923 443201 * c(GUSBP9, GTF2H2, NAIP, PMCHL2, BDP1, LOC647859) NA 0 NA 1.50811127409183 40 1.04372085373093 5 NA NA -5.76457963030379 LTS-032 chr5 70751924 93855590 23103667 * c(ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, NA NA NA NA NA NA NA NA NA LTS-032 SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, GCNT4, POLK, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.0665505881349436 213 0.0327145791436536 0.642997979845133 10253 0.333762214753601 2 2 0 -6.74061490526949 LTS-032 NA NA NA NA LTS-032 chr5 93855591 93855872 282 * KIAA0825 NA 0 NA 0.521 1 NA NA NA NA NA LTS-032 chr5 93855873 96366992 2511120 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.0763276503430922 55 0.0328305515921545 0.590840565936325 2200 0.160885834493492 2 2 0 -7.12417427976151 LTS-032 chr5 96366993 131630254 35263262 * c(KIAA1024L, LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LOC100505841, MIR4633, MIR4460, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, PRRC1, ZNF474, STARD4, WDR36, CSF2, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, LIX1, ADAMTS19, EFNA5, LVRN, FBN2, FER, PPIP5K2, ACSL6, TNFAIP8, DTWD2, RGMB, SLC27A6, SNX24, HINT1, APC, HSD17B4, CHSY3, FAM170A, NA NA NA NA NA NA NA NA NA LTS-032 FAM174A, SLCO4C1, TICAM2, IL3, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, ALDH7A1, RGMB-AS1, PAM, TMED7, ISOC1, PRR16, COMMD10, RAPGEF6, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, TRIM36, RIOK2, FEM1C, CDC42SE2, ZNF608, SEMA6A, CTXN3, EPB41L4A, TMEM232, ARL14EPL, LINC01184, FBXL17, YTHDC2, SNORA13, SLC12A2, SLC22A4, GRAMD3, SNX2, SRP19, LINC00992, MEIKIN, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TSLP, PDLIM4, P4HA2, C5orf30, LYRM7, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, FNIP1, PJA2) 0.0803020921831391 240 0.0495006020771183 0.643826336551482 11171 0.212603614884542 2 2 0 -6.76513125845343 LTS-032 NA NA NA NA LTS-032 chr5 131630255 134332018 2701764 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, FSTL4, SEPT8, JADE2, GDF9, UQCRQ, AFF4, HSPA4, CATSPER3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, ZCCHC10, PPP2CA, LOC553103, C5orf15, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.0719240055462047 18 0.0302441049190242 0.608504237651134 3339 0.181223674942917 2 2 0 -6.86941626391339 LTS-032 chr5 134332019 137911118 3579100 * c(VTRNA2-1, MIR874, C5orf66, KIF20A, BRD8, HNRNPA0, DCANP1, SLC25A48, EGR1, ETF1, FBXL21, KLHL3, GFRA3, SNORD63, PKD2L2, HSPA9, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, FAM53C, REEP2, KDM3B, PITX1, TRPC7, SPOCK1, TGFBI, WNT8A, NME5, CDC23, MYOT, CXCL14, H2AFY, SMAD5-AS1, CDC25C) 0.0677621949342177 48 0.0201701868154515 0.659358890273914 2939 0.356010545551905 2 2 0 -6.75356538270805 LTS-032 chr5 137911119 138117524 206406 * c(CTNNA1, HSPA9) NA 0 NA 0.339 1 NA NA NA NA NA LTS-032 chr5 138117525 138473185 355661 * c(CTNNA1, LRRTM2, SIL1) NA 0 NA 0.35725408552074 251 0.0838030130010121 1 NA NA -5.78064272411064 LTS-032 chr5 138473186 138611673 138488 * c(SIL1, SNHG4, MATR3) NA 0 NA 0.536 1 NA NA NA NA NA LTS-032 chr5 138611674 138700424 88751 * c(SNORA74A, PAIP2, SNHG4, MATR3) NA 0 NA 0.560267566755469 163 0.136499877996926 2 NA NA -5.81627424869782 LTS-032 chr5 138700425 138704408 3984 * c(PAIP2, SLC23A1) NA 0 NA 0.39 1 NA NA NA NA NA LTS-032 chr5 138704409 139008033 303625 * c(SPATA24, DNAJC18, TMEM173, PROB1, MZB1, PAIP2, ECSCR, UBE2D2, SLC23A1) 0.101099765294655 6 0.0328983282250026 0.342934881318045 513 0.0827250798279544 1 1 0 -7.09178468042295 LTS-032 chr5 139008034 139059842 51809 * CXXC5 NA 0 NA 0.829 1 NA NA NA NA NA LTS-032 chr5 139059843 177151327 38091485 * c(GNPDA1, SRA1, FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR4281, MIR3912, LINC01024, LOC100505658, LOC100507387, MIR4634, MIR378E, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, APBB3, TNIP1, CDX1, SLU7, RGS14, CPLX2, FAXDC2, FAM114A2, TCERG1, LMAN2, SPINK5, SOX30, B4GALT7, SYNPO, SLC35A4, GPRIN1, PWWP2A, C1QTNF2, SCGB3A2, CLTB, C5orf47, PPARGC1B, C5orf58, AFAP1L1, GRPEL2, LSM11, NA NA NA NA NA NA NA NA NA LTS-032 GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, NKX2-5, SLC36A2, SPINK13, CREBRF, JAKMIP2-AS1, ZMAT2, PPP1R2P3, FAM71B, PRELID2, SH3RF2, PLAC8L1, RNF145, ADRB2, DBN1, DIAPH1, DOCK2, DPYSL3, DRD1, SLC26A2, HBEGF, DUSP1, EBF1, HIGD2A, FAM153B, LOC202181, STK32A, SLC36A1, F12, FABP6, FAT2, FGF1, FGFR4, RNF44, ABLIM3, FOXI1, HMGXB3, ARHGAP26, ATP10B, FAF2, WWC1, FBXW11, LARP1, HARS2, ZNF346, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 EIF4E1B, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, PCDHGA12, CCDC69, PCDHB5, TSPAN17, HAVCR1, CYFIP2, PRELID1, IL17B, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, FAM153A, ARL10, RELL2, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GRK6, GPX3, GRIA1, NR3C1, MRPL22, PCDHB1, TLX3, HARS, KCNIP1, ANXA6, HK3, HMMR, HRH2, NDST1, HTR4, PRR7-AS1, ARSI, PFN3, IRGM, FBLL1, NIPAL4, IK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 IL12B, ITK, DND1, SIMC1, KCNMB1, SAP30L-AS1, C5orf46, ARHGEF37, LCP2, SPINK6, ANKHD1-EIF4EBP3, MIR103A1, MIR143, MIR146A, MIR218-2, SPINK14, FNDC9, MFAP3, FLJ16171, MSX2, NDUFA2, ATOX1, NPM1, IGIP, PCDH1, PCDHGC3, RPL26L1, DCTN4, PCDH12, DDX41, PDE6A, NOP16, LARS, CXXC5, PDGFRB, HMP19, UIMC1, PFDN1, RAB24, RBM27, NEURL1B, FAM193B, POU4F3, PCDHB18P, PCDHB17P, TMED9, CDHR2, WDR55, ANKHD1, SPDL1, THG1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PPP2R2B, TMCO6, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, NMUR2, KIAA1191, ERGIC1, TENM2, KCTD16, PCDHB16, HMHB1, PURA, RARS, RPS14, ZBED8, LOC643201, GRXCR2, NSD1, SPINK9, ARAP3, SGCD, RANBP17, SLC6A7, SLC34A1, SLIT3, BNIP1, SNCB, SPARC, SPINK1, SNORA74B, STK10, TAF7, MIR585, TCOF1, TTC1, CARMN, LOC729080, PCYOX1L, CCNJL, SH3TC2, PANK3, SAP30L, DOK3, CPEB4, PRR7, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MXD3, SLC4A9, SLC25A2, PCDHB19P, PSD2, THOC3, CYSTM1, SPINK7, HAVCR2, SMIM3, STC2, EIF4EBP3, PCDHGB4, ADAM19, FGF18, HDAC3, FCHSD1, ATP6V0E1, CCNG1, UNC5A, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, PDLIM7, CD14, CNOT8, SFXN1, HAND1, MED7, NRG2, RNF14, CLINT1, PCDHGA8, CD74, PCDHA9, KIAA0141, JAKMIP2) 0.071665413123159 546 0.0468479203439722 0.644059374128155 27093 0.622767115756615 2 2 0 -6.73472564563013 LTS-032 NA NA NA NA LTS-032 chr5 177151328 177161832 10505 * FAM153A NA 0 NA 0.405 1 NA NA NA NA NA LTS-032 chr5 177161833 177221326 59494 * FAM153A NA 0 NA 0.413651650164238 63 0.221946300411287 1 NA NA -5.7754301428348 LTS-032 chr5 177221327 177236342 15016 * character(0) NA 0 NA 0.706 1 NA NA NA NA NA LTS-032 chr5 177236343 178770759 1534417 * c(ZNF354B, N4BP3, ZNF454, GRM6, ZNF354C, HNRNPAB, ZNF879, NHP2, PROP1, CLK4, GMCL1P1, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, ZFP2, PHYKPL, COL23A1, ADAMTS2) 0.0646533296352664 48 0.030517057199898 0.650817360897806 1588 0.232084759783277 2 2 0 -6.75532229637047 LTS-032 chr5 178770760 178770981 222 * ADAMTS2 0.09 1 NA 0.684663204352807 7 0.168164318733904 2 2 0 -5.76443007751113 LTS-032 chr5 178770982 179157025 386044 * c(C5orf60, HNRNPH1, CBY3, RUFY1, CANX, ADAMTS2) 0.318605535440683 9 0.157586836731724 0.611961242375536 464 0.20863172467202 2 1 1 -7.0488898837523 LTS-032 chr5 179157026 179260153 103128 * c(MIR1229, MGAT4B, LTC4S, CANX, SQSTM1, MAML1) 0.055 1 NA 0.638603687802993 311 0.158422323194229 2 2 0 -5.76445844437781 LTS-032 chr5 179260154 180374817 1114664 * c(HEIH, OR2Y1, TBC1D9B, FLT4, RASGEF1C, MGAT1, MIR340, C5orf45, RNF130, MAPK9, CNOT6, ZFP62, LINC00847, BTNL8, SQSTM1, SCGB3A1, GFPT2) 0.0866430689443941 28 0.0229208437751554 0.646405050548581 1343 0.19817855577684 2 2 0 -7.03314206586048 LTS-032 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.312 1 NA NA NA NA NA LTS-032 chr5 180375294 180430967 55674 * c(BTNL3, BTNL8) NA 0 NA 1.1464117193317 67 0.217187250255283 4 NA NA -5.76553703178934 LTS-032 chr5 180430968 180431470 503 * BTNL3 NA 0 NA 0.421 1 NA NA NA NA NA LTS-032 chr5 180431471 180670858 239388 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM41) 0.0881075904572086 27 0.0357656586152462 0.596729464965096 495 0.195241892904099 2 2 0 -6.90183871474659 LTS-032 chr5 180670859 180688111 17253 * c(RACK1, TRIM52) NA 0 NA 0.603407765410294 57 0.163663758402819 2 NA NA -5.7658532872547 LTS-032 chr6 203389 335251 131863 * DUSP22 0.399 1 NA 0.870847573115856 33 0.1417210768953 3 3 0 -5.77500934266048 LTS-032 chr6 335252 29798140 29462889 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, NA NA NA NA NA NA NA NA NA LTS-032 DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, ZSCAN23, NKAPL, TOB2P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, DUSP22, LYRM4, MRS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ZSCAN12, KIAA0319, NUP153) 0.337687711640288 485 0.073096628686487 0.886973796573031 15517 0.256386862830078 3 2 1 -7.03613470958989 LTS-032 NA NA NA NA LTS-032 chr6 29798141 29855590 57450 * character(0) 0.438 1 NA 0.863561386326942 3 0.456975199910601 3 3 0 -5.76501065785054 LTS-032 chr6 29855591 29911207 55617 * character(0) 0.357425948354314 36 0.0749873798905999 0.725248929497271 84 4.16631674134184 14 9 5 -6.73897611278317 LTS-032 chr6 29911208 29911225 18 * character(0) 0.298 1 NA 0.693983135529687 3 0.133717363619439 2 2 0 -5.76441367121701 LTS-032 chr6 29911226 31963604 2052379 * character(0) 0.301919834949718 215 0.0906156712141645 0.882398774481607 6201 0.219315654601521 3 2 1 -6.92910277746554 LTS-032 chr6 31963605 31963682 78 * character(0) NA 0 NA 1.593 1 NA NA NA NA NA LTS-032 chr6 31963683 31996520 32838 * character(0) 0.264673221842554 8 0.0935261613514789 1.43083579375915 118 0.718388664452986 4 3 1 -6.73547907333951 LTS-032 chr6 31996521 32546520 550000 * HLA-DRB5 0.308623461427262 76 0.106682858420187 0.928383789398551 1605 0.286633212122486 3 2 1 -6.8184447032636 LTS-032 chr6 32546521 32605216 58696 * c(HLA-DQA1, HLA-DRB5) 0.338701467180515 50 0.0803094753857519 1.163940053067 104 0.73548104485774 6 4 2 -6.74438346449604 LTS-032 chr6 32605217 32605250 34 * HLA-DQA1 NA 0 NA 0.615 1 NA NA NA NA NA LTS-032 chr6 32605251 32627536 22286 * HLA-DQA1 0.330768512371532 60 0.0921976261076553 0.515992042102715 151 0.446164160188427 3 2 1 -6.77860677155406 LTS-032 chr6 32627537 32975885 348349 * character(0) 0.348278038364325 79 0.0638306598125068 0.894855982510244 876 0.337792702559059 3 2 1 -6.73423072497202 LTS-032 chr6 32975886 33035648 59763 * character(0) 0.461 1 NA 0.922934614497501 23 2.32131596093168 3 3 0 -5.76441038824419 LTS-032 chr6 33035649 33055009 19361 * character(0) 0.424325285092625 97 0.0660167715986052 1.05541592476928 220 5.51423035172627 16 9 7 -6.73404514486058 LTS-032 chr6 33055010 33086249 31240 * character(0) 0.335 1 NA 0.833144157120193 13 0.0529882667225152 3 3 0 -5.82553425945643 LTS-032 chr6 33086250 39272494 6186245 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-032 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, KCNK5, KCNK17, RNF8) 0.352167994086632 152 0.0578489035598879 0.914493381840817 8101 0.404926744738196 3 2 1 -6.73500866276709 LTS-032 NA NA NA NA LTS-032 chr6 39272495 39278664 6170 * KCNK17 NA 0 NA 1.19 1 NA NA NA NA NA LTS-032 chr6 39278665 41709021 2430357 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, PGC, TREM2, TREM1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, KCNK17, NCR2) 0.340581436898212 46 0.0757633009957841 0.983630441471735 1593 0.271922653914895 3 2 1 -6.83521774283156 LTS-032 chr6 41709022 41709510 489 * PGC NA 0 NA 0.824 1 NA NA NA NA NA LTS-032 chr6 41709511 50786571 9077061 * c(LINC01512, TOMM6, ANKRD66, MIR4647, MIR4642, RCAN2, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, CAPN11, KLHDC3, TAF8, C6orf141, CRISP1, PTCRA, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, ADGRF2, ENPP4, CUL9, UBR2, GLTSCR1L, CD2AP, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, USP49, ADGRF1, GNMT, TNFRSF21, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, GLYATL3, NA NA NA NA NA NA NA NA NA LTS-032 CRIP3, MEA1, MEP1A, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, MUT, NFKBIE, MRPL2, CYP39A1, PEX6, PGC, PGK2, CLIC5, POLH, GTPBP2, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, ENPP5, PRPH2, RHAG, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, TFAP2B, BYSL, CRISP2, VEGFA, PLA2G7, TFAP2D, TTBK1, SUPT3H, RUNX2, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, SLC25A27, POLR1C, MAD2L1BP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CUL7, CDC5L) 0.336730232390437 151 0.0813328424332886 0.929345412899187 8262 0.229146535860483 3 2 1 -6.76443863963071 LTS-032 NA NA NA NA LTS-032 chr6 50786572 50811452 24881 * TFAP2B NA 0 NA 1.07506352474124 59 0.312134686532158 4 NA NA -5.76607176233643 LTS-032 chr6 50811453 51273810 462358 * TFAP2B NA 0 NA 2.329 1 NA NA NA NA NA LTS-032 chr6 51273811 51481671 207861 * PKHD1 0.309 1 NA 2.23648513058792 51 0.423386240016482 8 8 0 -5.76489546746433 LTS-032 chr6 51481672 51900432 418761 * PKHD1 0.178155634347125 9 0.0824014562978107 2.58360072231927 349 0.690627158075801 11 9 2 -6.76652518176686 LTS-032 chr6 51900433 51948083 47651 * PKHD1 0.196072050869145 6 0.0292916370317536 3.1450154736995 139 0.836478856819687 16 13 3 -6.7419694222008 LTS-032 chr6 51948084 51949622 1539 * PKHD1 NA 0 NA 2.17 1 NA NA NA NA NA LTS-032 chr6 51949623 53160383 1210761 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, MIR206, MCM3, MIR133B, PKHD1, ELOVL5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.225481016222446 34 0.0368287456511739 2.38698084525081 1172 0.554609919076712 9 7 2 -6.76470524948475 LTS-032 chr6 53160384 53160544 161 * ELOVL5 NA 0 NA 2.24370637157534 4 0.365043832984479 8 NA NA -5.76441052204135 LTS-032 chr6 53160545 53362787 202243 * c(GCLC, ELOVL5, RPS16P5) 0.418 1 NA 1.71587259960365 21 0.299586770958488 6 6 0 -5.76478561624923 LTS-032 chr6 53362788 53409857 47070 * GCLC NA 0 NA 1.60658875951205 130 0.309920243265022 6 NA NA -5.76640943123236 LTS-032 chr6 53409858 53707088 297231 * c(GCLC, KLHL31, LRRC1) NA 0 NA 0.893491065966963 63 0.133222774823582 3 NA NA -5.77132534082127 LTS-032 chr6 53707089 53743768 36680 * LRRC1 NA 0 NA 1.218 1 NA NA NA NA NA LTS-032 chr6 53743769 57254927 3511159 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.455945375265641 55 0.0329676711350277 1.18541858622725 2428 0.257804001916401 4 2 2 -6.9957807784086 LTS-032 chr6 57254928 57254955 28 * PRIM2 0.405 1 NA 1.64898461645935 3 0.157836413204727 6 6 0 -5.76441220518964 LTS-032 chr6 57254956 57512678 257723 * PRIM2 0.342971853360891 33 0.0624672186758055 1.55137369626011 85 0.674285344887854 6 4 2 -6.73807072148476 LTS-032 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.25907391817696 19 0.23713366329774 4 NA NA -5.79313305664473 LTS-032 chr6 62390154 63990648 1600495 * c(KHDRBS2, LGSN) 0.469 1 NA 1.28215039469973 133 0.410289174150566 4 4 0 -5.79384347858914 LTS-032 chr6 63990649 73951866 9961218 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.445813608350895 51 0.0963436536978079 1.19713069028074 2594 0.338533512142319 4 2 2 -6.74310040800468 LTS-032 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-032 chr6 73952151 74446224 494074 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.435564382219103 21 0.103017474245877 1.04708459905992 648 0.284240435379887 4 2 2 -6.79509231163521 LTS-032 chr6 74446225 74466302 20078 * CD109 NA 0 NA 1.825 1 NA NA NA NA NA LTS-032 chr6 74466303 86253456 11787154 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, NT5E, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, SNX14, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.43620320019387 46 0.0990902214180407 1.19610766669029 4155 0.304937969197621 4 2 2 -6.73390335518908 LTS-032 chr6 86253457 86256814 3358 * SNX14 NA 0 NA 1.141 1 NA NA NA NA NA LTS-032 chr6 86256815 121602822 35346008 * c(LIN28B-AS1, TRAPPC3L, TSTD3, LOC100287632, MIR2113, LOC100422737, MIR4464, MIR4643, LOC100996634, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, CGA, PNRC1, ASCC3, BVES, SEC63, GTF3C6, KLHL32, NUS1, SLC16A10, CNR1, COL10A1, PM20D2, SRSF12, CFAP206, BVES-AS1, AIM1, EPHA7, C6orf163, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, ANKRD6, ZNF292, FOXO3, CDK19, MDN1, TSPYL4, UFL1, NA NA NA NA NA NA NA NA NA LTS-032 ORC3, BRD7P3, FRK, VGLL2, LACE1, FYN, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, ASF1A, PNISR, AMD1, FBXL4, SNORD50A, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, HTR1E, RSPH4A, GJB7, KPNA5, SNHG5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, UBE2J1, COQ3, PLN, POU3F2, SOBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 AKIRIN2, QRSL1, PREP, RARS2, PDSS2, GOPC, SMIM8, LYRM2, SNX14, HACE1, BEND3, RRAGD, PRDM13, REV3L, BACH2, ROS1, FAM229B, PRDM1, LINC01590, POPDC3, TSG1, TRAF3IP2-AS1, MICAL1, SIM1, SMPD2, MAP3K7, SNORD50B, MIR548B, NR2E1, TSPYL1, MCHR2-AS1, TPI1P3, METTL24, FAM184A, MANEA, GPR63, SPACA1, ARMC2, RPF2, MCHR2, FAXC, GJA10, RTN4IP1, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, CCNC, WASF1, MFSD4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 FHL5, ATG5, ZBTB24, FIG4, CASP8AP2) 0.443733628688104 348 0.0739507052957584 1.12565611660997 14850 0.317569315696735 4 2 2 -7.38249228920169 LTS-032 NA NA NA NA LTS-032 chr6 121602823 121604949 2127 * TBC1D32 NA 0 NA 2.112 1 NA NA NA NA NA LTS-032 chr6 121604950 125411549 3806600 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1, RNF217-AS1) 0.432225880331495 41 0.103334662330819 1.23522729961319 1225 0.390059701478659 4 2 2 -6.75119690867424 LTS-032 chr6 125411550 151743828 26332279 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, MIR5695, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, NCOA7, HINT3, RAET1E, CTGF, LOC153910, ZC2HC1B, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEY2, HEBP2, NA NA NA NA NA NA NA NA NA LTS-032 FUCA2, TMEM244, SHPRH, CCDC28A, MTHFD1L, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, RAET1G, ARG1, HMGA1P7, SUMO4, CENPW, SOGA3, THEMIS, SAMD5, IYD, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, HDDC2, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, RMND1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PLEKHG1, ZBTB2, PTPRK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ABRACL, PBOV1, SNORA33, TRMT11, RPS12, PERP, LOC643623, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, TCF21, TNFAIP3, TPD52L1, KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, OR2A4, EPM2A, ADGB, ULBP2, ULBP1, PPP1R14C, RNF146, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, RSPO3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, AKAP12, KIAA0408, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PHACTR2, BCLAF1) 0.44820091196724 281 0.0723035268849314 1.13170454157151 12794 0.624184435919431 4 2 2 -6.86806828573664 LTS-032 NA NA NA NA LTS-032 chr6 151743829 151744605 777 * RMND1 NA 0 NA 0.819 1 NA NA NA NA NA LTS-032 chr6 151744606 151942355 197750 * c(RMND1, ARMT1, CCDC170) 0.363709009484067 10 0.0498710559565588 0.835354494478172 221 0.290490866289766 3 2 1 -6.79689115908986 LTS-032 chr6 151942356 152128679 186324 * ESR1 NA 0 NA 1.237 1 NA NA NA NA NA LTS-032 chr6 152128680 153309782 1181103 * c(ESR1, SYNE1, FBXO5, MTRF1L, VIP, MYCT1) 0.446128853111397 30 0.0644891597412924 1.19563304027011 1372 0.31872890978676 4 2 2 -6.75526363849917 LTS-032 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.089 1 NA NA NA NA NA LTS-032 chr6 153309882 153311011 1130 * MTRF1L NA 0 NA 0.224477330393171 44 0.289118935708474 1 NA NA -5.76633795480922 LTS-032 chr6 153311012 160491117 7180106 * c(LOC100129518, C6orf99, AIRN, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, PNLDC1, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, MRPL18, IGF2R, ACAT2, GTF2H5, MAS1, CLDN20, OPRM1, NOX3, TFB1M, SNX9, MTRF1L, TULP4, ARID1B, TMEM181, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.448515707426547 78 0.0767664656154642 1.12940254432655 3781 1.18723442713889 4 2 2 -6.76447265980825 LTS-032 chr6 160491118 160492845 1728 * IGF2R NA 0 NA 1.387 1 NA NA NA NA NA LTS-032 chr6 160492846 163587313 3094468 * c(PACRG, IGF2R, LPA, MAP3K4, PARK2, PLG, AGPAT4, SLC22A1, SLC22A3, SLC22A2, LOC729603, AGPAT4-IT1, LPAL2) 0.450641355885964 28 0.0407425781211458 1.20626753124593 1214 0.368341405206885 4 2 2 -6.83666522782708 LTS-032 chr6 163587314 163836383 249070 * c(CAHM, PACRG, PACRG-AS1, DKFZp451B082, QKI) 0.293 1 NA 0.711522117378355 51 0.160638153844559 2 2 0 -5.82604508382104 LTS-032 chr6 163836384 163836910 527 * QKI NA 0 NA 1.049 1 NA NA NA NA NA LTS-032 chr6 163836911 167590641 3753731 * c(LOC100289495, MIR1913, MIR3939, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, C6orf118, GPR31, PRR18, TCP10L2, LINC00602, MPC1, RPS6KA2, T, RNASET2, LINC00473, QKI) 0.438271249090662 40 0.105842865510563 1.17774509213129 1489 0.331869137944718 4 2 2 -6.73756539416789 LTS-032 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.738 1 NA NA NA NA NA LTS-032 chr6 167591885 167622064 30180 * TCP10L2 0.311942531813454 2 0.112429978208661 0.891368213103291 142 0.606710701353906 7 5 2 -6.77906430517926 LTS-032 chr6 167622065 170070878 2448814 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.441083232366761 60 0.0723483627542486 1.22368313027323 1408 0.385696838762202 4 2 2 -6.74560287391572 LTS-032 chr6 170070879 170072349 1471 * WDR27 NA 0 NA 1.03 1 NA NA NA NA NA LTS-032 chr6 170072350 170891863 819514 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.446955222682119 20 0.0420080192845429 1.09247148790636 654 0.235698651439667 4 2 2 -6.8600838037259 LTS-032 chr6 170891864 170893599 1736 * PDCD2 NA 0 NA 1.00707139477882 23 0.351843580498977 3 NA NA -5.76448351753686 LTS-032 chr7 193047 227931 34885 * FAM20C 0.467 1 NA 1.16211333081175 37 0.267033430215868 4 4 0 -5.76461302871673 LTS-032 chr7 227932 5926027 5698096 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-032 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.44297229014815 208 0.0843006489027545 1.20816442572004 5439 0.31858600071185 4 2 2 -6.74559660717863 LTS-032 NA NA NA NA LTS-032 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.673 1 NA NA NA NA NA LTS-032 chr7 5937950 6006781 68832 * c(RSPH10B, CCZ1) 0.404440993696882 3 0.0296704117486315 0.6103195195159 114 0.331704614102552 5 3 2 -7.01840716107983 LTS-032 chr7 6006782 6012853 6072 * RSPH10B NA 0 NA 1.004 1 NA NA NA NA NA LTS-032 chr7 6012854 6825728 812875 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.421939830636528 41 0.0353323937595585 0.997352959715253 1344 0.250995295760077 4 2 2 -7.03758197993593 LTS-032 chr7 6825729 6826551 823 * RSPH10B2 NA 0 NA 1.525 1 NA NA NA NA NA LTS-032 chr7 6826552 6863802 37251 * c(CCZ1B, RSPH10B2) 0.263589745892016 3 0.019313207915828 1.5705628024983 68 0.622267143193183 8 6 2 -6.76430366911878 LTS-032 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.954 1 NA NA NA NA NA LTS-032 chr7 6864270 25181912 18317643 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, LOC100506178, KLHL7-AS1, MACC1-AS1, ARL4A, GPNMB, AGR2, IGF2BP3, NUPL2, GLCCI1, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, TSPAN13, BZW2, TRA2A, NXPH1, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, MEOX2, NDUFA4, NPY, NA NA NA NA NA NA NA NA NA LTS-032 MPP6, CYCS, MIOS, TOMM7, TMEM106B, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, SP4, SNORD93, TWIST1, UMAD1, ISPD, FAM126A, SCIN, DNAH11, CCDC126, PHF14, HDAC9, RAPGEF5) 0.445332369739252 156 0.0810181019097301 1.16830403322859 6608 0.36514996950736 4 2 2 -6.78143159017715 LTS-032 NA NA NA NA LTS-032 chr7 25181913 25191123 9211 * C7orf31 0 1 NA 1.05850329513532 7 0.266839348851023 4 4 0 -5.76552146871759 LTS-032 chr7 25191124 26252382 1061259 * c(RNU6-16P, CBX3, C7orf31, HNRNPA2B1, MIR148A, NPVF, NFE2L3) 0.223719853308267 10 0.230820180130671 1.11649879207353 232 0.287679331583919 4 3 1 -6.78953210521654 LTS-032 chr7 26252383 26573898 321516 * c(CBX3, SNX10, LOC441204, KIAA0087) 0.498 1 NA 1.06042156102196 117 0.29833468379385 4 4 0 -5.79437049502278 LTS-032 chr7 26573899 30635588 4061690 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, HOXA10-AS, NOD1, HIBADH, CHN2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, C7orf71, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, DPY19L2P3, MIR196B, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, PLEKHA8, TAX1BP1, SKAP2, CREB5, SCRN1, KIAA0087, TRIL NA NA NA NA NA NA NA NA NA LTS-032 ) 0.449402507566052 58 0.0661563346706866 1.20316435842647 2666 0.28776750072414 4 2 2 -6.7687276619019 LTS-032 NA NA NA NA LTS-032 chr7 30635589 30638372 2784 * GARS NA 0 NA 1.319 1 NA NA NA NA NA LTS-032 chr7 30638373 32338278 1699906 * c(INMT-FAM188B, PPP1R17, INMT, ADCYAP1R1, CRHR2, CCDC129, GARS, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.435104942424552 31 0.0889403086042749 1.31891199898944 1278 0.403582769248145 4 2 2 -6.7954925047999 LTS-032 chr7 32338279 39874090 7535812 * c(DPY19L1P1, LOC100130673, MIR1200, MIR550B2, TRG-AS1, POU6F2-AS1, AOAH-IT1, POU6F2, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, VPS41, BBS9, AMPH, AOAH, FAM183BP, LINC00265, GPR141, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, TARP, NT5C3A, NME8, PDE1C, ANLN, EPDR1, DPY19L2P1, YAE1D1, TBX20, RALA, RP9, HERPUD2, SFRP4, LOC646999, MIR550A2, EEPD1, STARD3NL, ELMO1, SEPT7) 0.446678411798728 141 0.0588155532228666 1.18802448863606 3344 0.583510051759841 4 2 2 -6.7623396686447 LTS-032 chr7 39874091 39892330 18240 * character(0) NA 0 NA 0.643 1 NA NA NA NA NA LTS-032 chr7 39892331 39990711 98381 * CDK13 NA 0 NA 0.693763686960017 60 0.248634474067687 2 NA NA -5.77027654135621 LTS-032 chr7 39990712 57532512 17541801 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, HPVC1, HUS1, SEPT14, IGFBP1, NA NA NA NA NA NA NA NA NA LTS-032 IGFBP3, ZNF713, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, PSPH, PURB, MYL7, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TBRG4, STK17A, H2AFV) 0.450048771613521 181 0.0703168331827597 1.20067748026653 8127 0.449654025941102 4 2 2 -6.76738839788194 LTS-032 NA NA NA NA LTS-032 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.75407560803227 13 0.433026558076984 6 NA NA -5.76441020061787 LTS-032 chr7 62758725 63033612 274888 * ZNF733P 0.485 1 NA 0.780914638641043 19 0.52924284435795 3 3 0 -5.77961947249536 LTS-032 chr7 63033613 91502687 28469075 * c(POM121C, LOC100128885, PMS2P9, LOC100133091, MIR548M, MIR4284, MIR3914-1, MIR3914-2, APTR, MAGI2-AS3, LINC01005, MIR4651, MIR4650-1, MIR4650-2, MIR548AU, MAGI2-AS2, LOC101409256, CCL26, SEMA3A, SEMA3C, ZNF273, FGL2, DBF4, TP53TG1, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, RUNDC3B, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ZNF92, ZNF679, ABHD11-AS1, ELN, ERV3-1, C7orf62, ZNF804B, SRRM3, NA NA NA NA NA NA NA NA NA LTS-032 RSBN1L, KIAA1324L, SEMA3D, POMZP3, NSUN5P2, AUTS2, STEAP2, TBL2, STEAP1, CRCP, RABGEF1, PCLO, GNAI1, LINC00174, GRM3, GTF2I, GTF2IP1, GUSB, HGF, HIP1, HSPB1, ZNF680, GNAT3, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, ASL, LOC441242, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, ZNF727, DPY19L2P4, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, ZNF117, ZNF107, STYXL1, CDK14, ABCB1, ABCB4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ADAM22, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, CROT, TMEM248, TYW1, NSUN5, SLC25A40, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, LOC641746, CCT6P3, CCT6P1, WBSCR17, INTS4P2, YWHAEP1, STAG3L4, NCF1, NCF1B, NCF1C, SRI, SNORA14A, SNORA22, STX1A, MIR590, ZNF736, GTF2IRD1P1, GATSL2, ZNF735, EIF4H, CLIP2, LAT2, YWHAG, ZNF138, ZP3, CACNA2D1, TMEM243, STEAP4, MTERF1, CFAP69, UPK3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RCC1L, FZD1, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, GTPBP10, BAZ1B, CLDN12, BCL7B, CD36, GTF2IRD1, SEMA3E, MAGI2, POM121, DMTF1) 0.438371660911344 205 0.0838932766954605 1.17192581154001 11254 0.377194183759428 4 2 2 -6.77304280340952 LTS-032 NA NA NA NA LTS-032 chr7 91502688 93625700 2123013 * c(MIR4652, AKAP9, CDK6, BET1, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNG11, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.44417316855524 22 0.102042093003764 1.08384447001414 2245 0.242476948132071 4 2 2 -6.93271390092393 LTS-032 chr7 93625701 93628493 2793 * BET1 NA 0 NA 1.523 1 NA NA NA NA NA LTS-032 chr7 93628494 98941907 5313414 * c(MIR3609, LOC100506136, SLC25A13, BET1, ARPC1A, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, DLX6-AS1, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, SMURF1, CASD1, TAC1, MIR591, SHFM1, TRRAP, MYH16, SGCE) 0.460388085245194 51 0.0699407872810293 1.18908093644657 3273 0.312273424839729 4 2 2 -6.81950760967113 LTS-032 chr7 98941908 98942006 99 * ARPC1A NA 0 NA 1.102 1 NA NA NA NA NA LTS-032 chr7 98942007 100321138 1379132 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, NA NA NA NA NA NA NA NA NA LTS-032 GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, ZNF394, BUD31, TRIM4, AP4M1, ATP5J2) 0.450505746031943 58 0.0485398907305683 1.11950578921724 3884 0.231333762670299 4 2 2 -6.86608712886948 LTS-032 NA NA NA NA LTS-032 chr7 100321139 100346118 24980 * c(EPO, ZAN) 0 1 NA 1.19349179398519 51 0.418717493792465 4 4 0 -5.76441014520679 LTS-032 chr7 100346119 100549499 203381 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) NA 0 NA 1.19513196875505 668 0.306230636177153 4 NA NA -5.76441400541815 LTS-032 chr7 100549500 100549505 6 * character(0) 0.202 1 NA 3.857 1 NA NA NA NA NA LTS-032 chr7 100549506 100550184 679 * character(0) 0.379422300754253 24 0.0588889891531368 2.40515962714544 36 0.948043584072793 8 5 3 -6.73345888574443 LTS-032 chr7 100550185 100550191 7 * character(0) 0.215 1 NA 2.857 1 NA NA NA NA NA LTS-032 chr7 100550192 100550726 535 * character(0) 0.233169396497991 15 0.112049011385112 2.2105248385958 25 0.549270661878094 9 7 2 -6.73312384758724 LTS-032 chr7 100550727 100550766 40 * character(0) 0.084 1 NA 0.247 1 NA NA NA NA NA LTS-032 chr7 100550767 100551096 330 * character(0) 0.261238084296645 8 0.0875487619232032 0.631846680113405 42 0.387917856080642 8 6 2 -6.73537414065892 LTS-032 chr7 100551097 100551566 470 * character(0) 0.296818186097475 22 0.0879560102566035 1.95988108701087 30 0.494474188394607 7 5 2 -6.73323293427275 LTS-032 chr7 100551567 100551578 12 * character(0) 0.418 1 NA 2.258 1 NA NA NA NA NA LTS-032 chr7 100551579 100553077 1499 * character(0) 0.373645595528407 47 0.0830652530407252 1.98739301599965 81 0.892702686982446 16 10 6 -6.73412638538572 LTS-032 chr7 100553078 100553092 15 * character(0) NA 0 NA 1.276 1 NA NA NA NA NA LTS-032 chr7 100553093 100635767 82675 * MUC12 0.37337051720919 25 0.0815838627834369 1.4737430137747 139 0.799832449545822 8 5 3 -6.75005088607394 LTS-032 chr7 100635768 100647920 12153 * MUC12 0.452 1 NA 1.54022712651982 3 0.432083711025229 5 5 0 -5.76449796179093 LTS-032 chr7 100647921 101962214 1314294 * c(MIR4285, MIR4653, MUC12, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3, MYL10) 0.455885413747279 36 0.0365015655241564 1.2166656674591 1607 0.272784248697456 4 2 2 -6.95092133995584 LTS-032 chr7 101962215 102016628 54414 * c(LOC100289561, LOC100630923, SPDYE6) NA 0 NA 1.023 1 NA NA NA NA NA LTS-032 chr7 102016629 102389697 373069 * c(RASA4B, LOC100289561, SPDYE2B, MIR4467, LOC100630923, MIR5090, RASA4, LRWD1, FAM185A, POLR2J2, POLR2J, ALKBH4, POLR2J3, PRKRIP1, ORAI2) 0.466627616065597 12 0.0253309907210336 1.19607028014384 434 1.17086032463037 4 2 2 -7.60640753848158 LTS-032 chr7 102389698 102412901 23204 * FAM185A 0.273 1 NA 1.13383076215651 25 0.299153544744724 4 4 0 -5.76481361674189 LTS-032 chr7 102412902 102739043 326142 * c(LRRC17, FAM185A, FBXL13, ARMC10) 0.357288409689223 9 0.224123911659996 1.11052186882764 249 0.298849198273508 3 2 1 -6.81289441807433 LTS-032 chr7 102739044 102739085 42 * ARMC10 0.423 1 NA 1.60479798323867 3 0.23038301442019 6 6 0 -5.76441337309602 LTS-032 chr7 102739086 121023139 18284054 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, TSPAN12, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, DPY19L2P2, KCND2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NRCAM, ORC5, PNPLA8, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, PUS7, NA NA NA NA NA NA NA NA NA LTS-032 ING3, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, WNT2, ST7, CBLL1, CPED1, CAPZA2, ARMC10, IMMP2L, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, FOXP2, PMPCB, DOCK4) 0.453199544788362 103 0.0730055334840053 1.117635726358 8037 0.393975553621494 4 2 2 -7.06284959780668 LTS-032 NA NA NA NA LTS-032 chr7 121023140 121080941 57802 * FAM3C NA 0 NA 1.41 1 NA NA NA NA NA LTS-032 chr7 121080942 131808439 10727498 * c(LOC100130705, SMKR1, RNA5SP244, AASS, TSGA13, CPA1, CPA2, KLF14, SSMEM1, ASB15, FEZF1-AS1, IQUB, C7orf77, MGC27345, RNF133, ZNF800, KLHDC10, FLNC, AHCYL2, TNPO3, HYAL4, POT1, HYALP1, COPG2, SND1, SND1-IT1, TPI1P2, GPR37, GRM8, HILPDA, FSCN3, MESTIT1, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, LINC-PINT, RNF148, ARF5, FEZF1, LEP, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, NA NA NA NA NA NA NA NA NA LTS-032 MEST, MKLN1, LMOD2, MIR335, NDUFA5, NRF1, PAX4, TAS2R16, CPA4, ZC3HC1, PODXL, RBM28, METTL2B, STRIP2, PTPRZ1, OPN1SW, LRRC4, NA, CCDC136, SLC13A1, SMO, SPAM1, MIR592, MIR593, TMEM229A, UBE2H, GCC1, CALU, FAM71F1, TMEM209, WASL, PLXNA4, ATP6V1F, CADPS2, CPA5, CEP41) 0.442141648670557 148 0.0901478293484556 1.17052700735766 6250 0.341794278562964 4 2 2 -6.75827186943766 LTS-032 NA NA NA NA LTS-032 chr7 131808440 133261628 1453189 * c(FLJ40288, CHCHD3, EXOC4, PLXNA4) 0.354308344975321 23 0.0444439959353742 0.958299875243518 590 0.807744230279538 3 2 1 -6.74406386231755 LTS-032 chr7 133261629 133314741 53113 * EXOC4 NA 0 NA 1.125 1 NA NA NA NA NA LTS-032 chr7 133314742 140175166 6860425 * c(LOC100129148, LOC100130880, JHDM1D-AS1, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, CNOT4, ATP6V0A4, LUC7L2, TMEM140, ZC3HAV1, AKR1B10, MIR490, PTN, KIAA1549, EXOC4, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, NA NA NA NA NA NA NA NA NA LTS-032 TRIM24, DGKI, ZC3HAV1L) 0.43536635073465 122 0.11115091030275 1.16277725854557 5012 0.335103257300158 4 2 2 -6.75731666712663 LTS-032 NA NA NA NA LTS-032 chr7 140175167 140483034 307868 * c(NDUFB2-AS1, MKRN1, DENND2A, NDUFB2, BRAF, ADCK2) 0.394368934860417 4 0.0750777374903284 0.922432440065675 347 0.201917725703377 3 2 1 -6.94443924517427 LTS-032 chr7 140483035 140487267 4233 * BRAF NA 0 NA 1.854 1 NA NA NA NA NA LTS-032 chr7 140487268 141837340 1350073 * c(TMEM178B, OR9A4, PRSS37, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, MRPS33, TAS2R5, AGK, KIAA1147, TAS2R38, BRAF, SSBP1, MGAM, MGAM2) 0.441800841697695 34 0.0842662838587618 1.14783466966063 1206 0.272474936399005 4 2 2 -6.75482730666173 LTS-032 chr7 141837341 141847433 10093 * MGAM2 0 1 NA 1.23947990529463 35 0.858618743225704 4 4 0 -5.76442209497098 LTS-032 chr7 141847434 142119928 272495 * c(MOXD2P, PRSS58, NA) 0.382575483011974 5 0.11354162232415 1.14951752755973 337 0.303762637572765 5 3 2 -6.85311792127695 LTS-032 chr7 142119929 142499862 379934 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.307040224380641 58 0.116689433004684 1.60441425583086 401 3.30566767348613 10 7 3 -6.73992073363855 LTS-032 chr7 142499863 142500003 141 * character(0) NA 0 NA 1.41380558141448 5 0.11741294647525 5 NA NA -5.76441903643917 LTS-032 chr7 142500004 142500146 143 * character(0) NA 0 NA 0.993 1 NA NA NA NA NA LTS-032 chr7 142500147 142510309 10163 * character(0) 0.452 1 NA 1.09002199908032 5 0.181446410821487 4 4 0 -5.76592100423151 LTS-032 chr7 142510310 143305591 795282 * c(CLCN1, OR9A2, C7orf34, TMEM139, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B) 0.470837700860219 39 0.0250052086341907 1.15381572065209 1341 0.277133132113551 4 2 2 -7.83629741436768 LTS-032 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.0946719223914416 39 0.148452848787386 0 NA NA -5.76559413877542 LTS-032 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.776 1 NA NA NA NA NA LTS-032 chr7 143400289 143884103 483815 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.452022620060705 11 0.0596547643452802 1.19940950898562 289 0.434281458268892 4 2 2 -6.78914442783407 LTS-032 chr7 143884104 143884193 90 * ARHGEF35 NA 0 NA 0.688 1 NA NA NA NA NA LTS-032 chr7 143884194 143972021 87828 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.484614456939237 42 0.145859318408357 2 NA NA -5.95303933449104 LTS-032 chr7 143972022 143973427 1406 * ARHGEF34P NA 0 NA 0.711 1 NA NA NA NA NA LTS-032 chr7 143973428 144015687 42260 * ARHGEF34P 0.328969875688698 3 0.0973721383832836 0.970597291999756 51 0.821422211895976 6 4 2 -6.75577477775964 LTS-032 chr7 144015688 144015748 61 * character(0) NA 0 NA 0.514 1 NA NA NA NA NA LTS-032 chr7 144015749 144074299 58551 * ARHGEF5 NA 0 NA 0.552766688822303 53 0.203155443571025 2 NA NA -5.78319115275472 LTS-032 chr7 144074300 155749951 11675652 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, ZNF775, NA NA NA NA NA NA NA NA NA LTS-032 LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.441302796717269 213 0.0781957860998279 1.15871231691266 7777 0.530192861220772 4 2 2 -6.75990174173927 LTS-032 NA NA NA NA LTS-032 chr7 155749952 155749974 23 * character(0) 0.109 1 NA 2.578 1 NA NA NA NA NA LTS-032 chr7 155749975 156763589 1013615 * c(C7orf13, RNF32, LOC285889, LMBR1, LINC00244, NOM1) 0.316561800336703 13 0.236620598622157 1.11813968254352 479 0.432365386757227 4 3 1 -6.77099652465813 LTS-032 chr7 156763590 156764039 450 * NOM1 0.49 1 NA 1.30625705694743 11 0.20797403684114 4 4 0 -5.76446129781369 LTS-032 chr7 156764040 158536267 1772228 * c(DNAJB6, LOC100506585, MIR5707, MNX1, MIR153-2, NCAPG2, ESYT2, PTPRN2, NOM1, MNX1-AS1, MIR595, UBE3C) 0.437620451706505 49 0.0756812484076751 1.13489948192279 983 1.16471685935216 4 2 2 -6.73659688494764 LTS-032 chr7 158536268 158536334 67 * ESYT2 0.314 1 NA 1.32431775409907 3 0.380874432501492 5 5 0 -5.7644130650928 LTS-032 chr7 158536335 159025938 489604 * c(LINC00689, WDR60, ESYT2, VIPR2) 0.300520119311523 13 0.127162373486693 1.17581678112635 391 0.337095953696896 4 3 1 -6.77059645471727 LTS-032 chr7 159025939 159025951 13 * character(0) NA 0 NA 1.021 1 NA NA NA NA NA LTS-032 chr8 182757 182949 193 * ZNF596 0.209 1 NA 1.03002340418591 3 0.204052280882457 3 3 0 -5.76444733276344 LTS-032 chr8 182950 6615754 6432805 * c(LOC100287015, MIR4659A, MIR4659B, TDRP, ERICH1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, AGPAT5, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.340311600500169 61 0.0652132860511999 0.962179534351623 2143 0.288135548216101 3 2 1 -6.84816953960508 LTS-032 chr8 6615755 6681085 65331 * c(XKR5, AGPAT5) NA 0 NA 0.956510904981856 72 0.280132099120659 3 NA NA -5.76528723439831 LTS-032 chr8 6681086 6735300 54215 * c(GS1-24F4.2, DEFB1, XKR5) 0.483 1 NA 0.656394272426146 33 0.176606865235995 2 2 0 -5.76496423048184 LTS-032 chr8 6735301 20110641 13375341 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LINC00681, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, DEFT1P, PRSS55, C8orf74, FDFT1, FGL1, PSD3, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, FAM86B3P, XKR6, MICU3, CNOT7, NA NA NA NA NA NA NA NA NA LTS-032 LOC340357, USP17L2, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, USP17L4, USP17L3, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PPP1R3B, TUSC3, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, NAT1, ERI1, MTMR7, LONRF1, MFHAS1, RP1L1) 0.434001887987223 175 0.0792868037026296 0.67084857203781 6014 1.13540180496079 2 1 1 -6.74552496707597 LTS-032 NA NA NA NA LTS-032 chr8 20110642 20112642 2001 * LZTS1 NA 0 NA 0.610210298062467 18 0.0611416441845881 2 NA NA -5.7652095505543 LTS-032 chr8 20112643 21833965 1721323 * c(LZTS1-AS1, LZTS1, XPO7, GFRA2, LOC286114, DOK2) 0.158 1 NA 0.399532510278894 223 0.0918195779161523 1 1 0 -6.60024337026944 LTS-032 chr8 21833966 22105811 271846 * c(NPM2, LGI3, DMTN, XPO7, MIR320A, HR, SFTPC, FAM160B2, BMP1, POLR3D, NUDT18, REEP4, FGF17, PHYHIP) 0.123797428490374 37 0.0394218731681294 0.392759646252486 1112 0.114290155326021 1 1 0 -6.79672633265654 LTS-032 chr8 22105812 22105916 105 * POLR3D NA 0 NA 0.244 1 NA NA NA NA NA LTS-032 chr8 22105917 31498232 9392316 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, EGR3, R3HCC1, EPHX2, EXTL3, PTK2B, TRIM35, RHOBTB2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, LOXL2, NEFM, NEFL, NKX3-1, NA NA NA NA NA NA NA NA NA LTS-032 SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, LINC00589, MBOAT4, PDLIM2, EBF2, POLR3D, BNIP3L, STC1, WRN, HMBOX1, FZD3, UBXN8, DOCK5, BIN3-IT1, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.124278765335726 178 0.0438859749542987 0.365965530586332 8051 0.120805225161105 1 1 0 -6.73400971008093 LTS-032 NA NA NA NA LTS-032 chr8 32405733 32622304 216572 * NRG1 0.342 1 NA 0.0965970524710026 154 0.0313976551567495 0 0 0 -6.39476773040021 LTS-032 chr8 33228298 33347868 119571 * c(TTI2, MAK16, FUT10) 0.12309166877603 5 0.0274809024597083 0.358270600998367 128 0.0943934190322317 1 1 0 -6.73639232759114 LTS-032 chr8 33347869 33353043 5175 * c(TTI2, MAK16) NA 0 NA 0.756 1 NA NA NA NA NA LTS-032 chr8 33353044 33356829 3786 * c(TTI2, MAK16) 0.169892214602654 2 0.0509116882454314 0.717009979663357 26 0.116185448579151 6 5 1 -6.90807829813025 LTS-032 chr8 33356830 33358162 1333 * c(TTI2, MAK16) 0.456 1 NA 0.599560413284222 22 0.141377216396481 2 2 0 -5.76459238586292 LTS-032 chr8 33358163 33416222 58060 * c(RNF122, TTI2, MAK16) 0.458329742404493 10 0.0287071419685067 0.662685791033439 112 0.143537688885639 2 1 1 -7.14683345305549 LTS-032 chr8 33416223 33424642 8420 * RNF122 NA 0 NA 0.630182232268173 19 0.116309126320754 2 NA NA -5.7645271393733 LTS-032 chr8 33424643 33448834 24192 * RNF122 NA 0 NA 1.834 1 NA NA NA NA NA LTS-032 chr8 33448835 35093415 1644581 * c(UNC5D, DUSP26) NA 0 NA 1.59119133255987 51 0.414304179246573 5 NA NA -5.80095585918321 LTS-032 chr8 35093416 35401840 308425 * UNC5D NA 0 NA 2.843 1 NA NA NA NA NA LTS-032 chr8 35401841 35653746 251906 * UNC5D NA 0 NA 2.44057979069762 224 0.430965711520913 9 NA NA -5.76665319603715 LTS-032 chr8 35653747 36666329 1012583 * KCNU1 0.094 1 NA 3.79663028441452 39 0.777408781115486 13 13 0 -5.76546804065247 LTS-032 chr8 36666330 36790543 124214 * KCNU1 NA 0 NA 3.71110619127887 113 0.701472299081013 13 NA NA -5.76442426541476 LTS-032 chr8 36790544 36793045 2502 * KCNU1 NA 0 NA 1.963 1 NA NA NA NA NA LTS-032 chr8 36793046 39313093 2520048 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, KCNU1, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.1593534337947 31 0.0586242820989128 1.95039228143352 2760 0.47533784125501 7 6 1 -6.74142821748563 LTS-032 chr8 39313094 39323299 10206 * ADAM3A NA 0 NA 2.93 1 NA NA NA NA NA LTS-032 chr8 39323300 39349408 26109 * ADAM3A NA 0 NA 3.39552929447717 39 0.953336886217817 12 NA NA -5.76441015957779 LTS-032 chr8 39349409 39349414 6 * ADAM3A NA 0 NA 2.452 1 NA NA NA NA NA LTS-032 chr8 39349415 39602457 253043 * c(LOC100130964, ADAM3A, ADAM2, ADAM18) 0.134 1 NA 2.09256781817653 118 0.510425780289194 7 7 0 -5.76512530266926 LTS-032 chr8 39602458 39604028 1571 * ADAM2 NA 0 NA 1.14 1 NA NA NA NA NA LTS-032 chr8 39604029 41128710 1524682 * c(IDO2, ADAM2, IDO1, C8orf4, SFRP1, ZMAT4) 0.241965921379922 12 0.119635399392817 1.2763478192282 407 0.393266838587403 4 3 1 -6.78995367326054 LTS-032 chr8 41128711 41134624 5914 * SFRP1 NA 0 NA 1.16962777924911 13 0.0751915502617763 4 NA NA -5.76465728650879 LTS-032 chr8 41134625 41160930 26306 * SFRP1 NA 0 NA 1.028 1 NA NA NA NA NA LTS-032 chr8 41160931 41391704 230774 * c(GOLGA7, SFRP1, GINS4) 0.067 1 NA 0.932975895597539 87 0.221793755987708 3 3 0 -5.76522293122717 LTS-032 chr8 41391705 43054647 1662943 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, PLAT, POLB, THAP1, MIR486-1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, GINS4, HOOK3, CHRNA6) 0.0739477350280885 32 0.090741074163372 0.898045192589627 2233 0.277468437257176 3 3 0 -6.78384244061842 LTS-032 chr8 43054648 43212050 157403 * c(HGSNAT, POTEA) NA 0 NA 1.04653118017574 111 0.290925227439437 4 NA NA -5.78351284185282 LTS-032 chr8 47752736 48746905 994170 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0 1 NA 2.37029292019975 439 0.66753271045279 8 8 0 -5.76575463109527 LTS-032 chr8 48746906 49988627 1241722 * c(MCM4, C8orf22, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.326262760619905 5 0.223650843951012 2.58523747492699 670 0.652219843958547 9 6 3 -6.73494356134512 LTS-032 chr8 49988628 50448932 460305 * C8orf22 NA 0 NA 1.164 1 NA NA NA NA NA LTS-032 chr8 50448933 52731018 2282086 * c(PCMTD1, PXDNL, SNTG1) 0.194543171684233 14 0.066127623859947 1.52785464464126 326 0.549228643156405 5 4 1 -6.8170442297335 LTS-032 chr8 52731019 52731092 74 * PCMTD1 0.313 1 NA 1.302 1 NA NA NA NA NA LTS-032 chr8 52731093 54138291 1407199 * c(PCMTD1, NPBWR1, FAM150A, OPRK1, ST18, RB1CC1) 0.351558606265745 13 0.0631138572292882 1.69438772779193 589 0.429056009771361 6 4 2 -6.75228980342232 LTS-032 chr8 54138292 54138372 81 * OPRK1 NA 0 NA 0.98 1 NA NA NA NA NA LTS-032 chr8 54138373 54140029 1657 * OPRK1 0.351842825203816 6 0.0310333154314305 1.11318205448742 34 0.614534428792336 3 2 1 -6.73807907619915 LTS-032 chr8 54140030 54140789 760 * OPRK1 0.257 1 NA 0.97630982741751 17 0.713579703079522 3 3 0 -5.76441361646311 LTS-032 chr8 54140790 54163983 23194 * OPRK1 0.262749804049213 5 0.0323419232575925 1.06136788188767 70 0.681567564310756 4 3 1 -6.75461773676169 LTS-032 chr8 54163984 54625439 461456 * OPRK1 NA 0 NA 1.783 1 NA NA NA NA NA LTS-032 chr8 54625440 56438708 1813269 * c(SBF1P1, LYPLA1, XKR4, MRPL15, ATP6V1H, RP1, SOX17, TCEA1, RGS20) 0.24330717522859 8 0.100917841407185 2.11575641895338 820 0.525598777466403 8 6 2 -6.7753260919595 LTS-032 chr8 56438709 56637736 199028 * XKR4 NA 0 NA 4.14 1 NA NA NA NA NA LTS-032 chr8 56637737 56863151 225415 * c(TMEM68, LYN, TGS1) 0.282616372679332 6 0.0466261729074991 3.57703091727056 242 0.796928889303921 11 8 3 -6.74003373279285 LTS-032 chr8 56863152 56882457 19306 * LYN NA 0 NA 3.51242800325732 25 0.413565605436429 12 NA NA -5.76448230661346 LTS-032 chr8 56882458 56910825 28368 * LYN NA 0 NA 2.803 1 NA NA NA NA NA LTS-032 chr8 56910826 56985814 74989 * c(LYN, RPS20) 0.386 1 NA 2.82279067366908 53 0.433692075556587 10 10 0 -5.76442901348966 LTS-032 chr8 56985815 57357975 372161 * c(SDR16C5, SNORD54, MOS, PENK, PLAG1, RPS20, CHCHD7) 0.39525079600567 12 0.0332552114849551 2.69682582427615 400 0.613996204623432 10 6 4 -6.7400856463454 LTS-032 chr8 57357976 57906465 548490 * c(LINC00968, PENK, IMPAD1) NA 0 NA 2.99026888639728 175 0.570946310831602 11 NA NA -5.76633621530606 LTS-032 chr8 58470929 59061357 590429 * FAM110B NA 0 NA 1.55770998392696 62 0.244383042355231 5 NA NA -5.78478608910366 LTS-032 chr8 59061358 59345705 284348 * c(UBXN2B, FAM110B) 0.051 1 NA 1.15637314301152 17 0.300652012055368 4 4 0 -5.76625198646683 LTS-032 chr8 59345706 61536158 2190453 * c(UBXN2B, CYP7A1, RAB2A, SDCBP, CA8, NSMAF, TOX) 0.0501139773853146 18 0.0225374778645866 1.10633389416909 698 0.285652950915263 4 4 0 -7.00059049206759 LTS-032 chr8 61536159 61536203 45 * RAB2A 0.077 1 NA 0.201 1 NA NA NA NA NA LTS-032 chr8 61536204 61707771 171568 * CHD7 0.0785462770357134 2 0.0473761543394987 0.626819765813192 59 0.154942437606234 2 2 0 -6.75455118680887 LTS-032 chr8 61707772 61712934 5163 * CHD7 NA 0 NA 0.319 1 NA NA NA NA NA LTS-032 chr8 61712935 62003531 290597 * c(LOC100130298, CHD7) 0.221376995559635 4 0.0850666405433607 0.336571364722351 292 0.112119565502249 1 1 0 -7.5396021538731 LTS-032 chr8 62003532 65285955 3282424 * c(MIR124-2HG, MIR4470, YTHDF3-AS1, CLVS1, YTHDF3, NKAIN3, LINC01289, ASPH, UG0898H09, TTPA, GGH) 0.0816437812524548 11 0.0264038564676381 0.640155021837676 618 0.180433563558933 2 2 0 -6.84681624510605 LTS-032 chr8 65285956 65711395 425440 * c(MIR124-2HG, BHLHE22, LOC401463, MIR124-2, CYP7B1) 0.0681240414583132 3 0.0225018517756502 0.929901062356386 176 0.321381987742709 2 2 0 -7.06024513981237 LTS-032 chr8 66439511 66691934 252424 * c(LINC01299, PDE7A, ARMC1, MTFR1) 0.0696960122313313 10 0.071838476227344 1.32203753728569 308 0.415391714864154 4 4 0 -6.8590994888957 LTS-032 chr8 66691935 67025494 333560 * c(PDE7A, DNAJC5B) 0.029 1 NA 1.2958798587589 55 0.178276414970349 4 4 0 -5.80712806080611 LTS-032 chr8 67025495 67710914 685420 * c(LINC00967, RRS1-AS1, C8orf44-SGK3, ADHFE1, CRH, RRS1, SGK3, C8orf46, PTTG3P, MYBL1, C8orf44, VCPIP1, TRIM55) 0.0284603677098653 9 0.0120830459735946 1.37419605186043 770 0.570772823255284 5 5 0 -6.75769226432305 LTS-032 chr8 67710915 67716585 5671 * c(C8orf44-SGK3, SGK3) NA 0 NA 1.973 1 NA NA NA NA NA LTS-032 chr8 67716586 72448141 4731556 * c(TCF24, LINC01592, C8orf44-SGK3, NCOA2, ARFGEF1, COPS5, C8orf34, MCMDC2, EYA1, SULF1, TRAM1, SGK3, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, SNHG6, SNORD87, CSPP1, PREX2, SLCO5A1) 0.0339377760746825 68 0.0146248972892096 1.50637847733013 2499 0.46015692990625 5 5 0 -6.77229972340375 LTS-032 chr8 72448142 72753821 305680 * MSC NA 0 NA 2.286 1 NA NA NA NA NA LTS-032 chr8 72753822 73157272 403451 * c(MSC-AS1, LOC392232, TRPA1, MSC) 0.0293964019228217 13 0.0762860675521035 1.8480177509405 275 0.818187956788887 6 6 0 -6.73557031558702 LTS-032 chr8 73157273 73479836 322564 * c(LOC392232, KCNB2) NA 0 NA 2.693 1 NA NA NA NA NA LTS-032 chr8 73479837 74917177 1437341 * c(STAU2-AS1, C8orf89, RDH10, SBSPON, LY96, STAU2, TMEM70, UBE2W, RPL7, TCEB1, TERF1, KCNB2) 0.0112591427563351 5 0.010968135666557 2.51843772158709 890 0.792893890826786 11 11 0 -6.84555785662422 LTS-032 chr8 74917178 74922205 5028 * LY96 NA 0 NA 3.513 1 NA NA NA NA NA LTS-032 chr8 74922206 75946805 1024600 * c(MIR2052, MIR5681A, MIR5681B, LY96, MIR2052HG, PI15, GDAP1, JPH1, CRISPLD1) 0.00866687013054416 4 0.00216024689946929 3.35495037321979 451 0.868988322293138 18 18 0 -6.87587596025852 LTS-032 chr8 76452100 77765865 1313766 * c(ZFHX4-AS1, HNF4G, ZFHX4) 0.0257099725592062 4 0.00946924847422786 2.68441215094575 276 0.711360308881078 7 7 0 -6.93425262351865 LTS-032 chr8 77765866 79073389 1307524 * c(PEX2, ZFHX4) NA 0 NA 2.84706895978041 231 0.490773952434806 10 NA NA -5.76441046767597 LTS-032 chr8 79073390 79510544 437155 * PKIA NA 0 NA 0.735 1 NA NA NA NA NA LTS-032 chr8 79510545 79610710 100166 * c(ZC2HC1A, PKIA) 0.078 1 NA 0.683109176962167 107 0.231756594734567 2 2 0 -5.76884000619584 LTS-032 chr8 79610711 92988143 13377433 * c(C8orf88, LRRC69, REXO1L2P, MIR4661, MIR5708, LINC00534, LOC101241902, WWP1, STMN2, SLC26A7, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, ATP6V0D2, REXO1L1P, MRPS28, SLC10A5, IL7, IMPA1, CA13, C8orf59, MMP16, NBN, ZC2HC1A, RMDN1, OTUD6B, PMP2, CNGB3, TMEM55A, PAG1, ZNF704, SNX16, NECAB1, FABP9, FABP12, ZBTB10, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, NA NA NA NA NA NA NA NA NA LTS-032 RUNX1T1, RIPK2, CPNE3, CHMP4C) 0.0783057147416592 74 0.0546092663688426 0.648111284205462 4406 0.210166338619494 2 2 0 -6.7661273338537 LTS-032 NA NA NA NA LTS-032 chr8 92988144 93929296 941153 * c(TRIQK, FLJ46284, RUNX1T1) 0.071 1 NA 0.393818413842845 186 0.172639902118674 1 1 0 -5.8672169824278 LTS-032 chr8 93929297 94146238 216942 * TRIQK NA 0 NA 0.554 1 NA NA NA NA NA LTS-032 chr8 94146239 95806061 1659823 * c(LOC100288748, MIR378D2, FSBP, CDH17, FAM92A1, RAD54B, KIAA1429, GEM, DPY19L4, C8orf87, RBM12B, PDP1, ESRP1, RBM12B-AS1, LINC00535, TMEM67) 0.0714110582285357 34 0.0306357037753509 0.625333380081961 1315 0.18681730629533 2 2 0 -6.75260766203352 LTS-032 chr8 95806062 95825498 19437 * DPY19L4 NA 0 NA 0.365 1 NA NA NA NA NA LTS-032 chr8 95825499 96599178 773680 * c(MIR3150A, MIR3150B, C8orf37-AS1, NDUFAF6, C8orf37, INTS8, LINC01298, PLEKHF2, CCNE2, TP53INP1) 0.136334730467355 6 0.0532653733676954 0.358897147314249 568 0.101892893801596 1 1 0 -6.78658018237654 LTS-032 chr8 96599179 97623943 1024765 * c(LOC100500773, C8orf37-AS1, GDF6, MTERF3, SDC2, UQCRB, PTDSS1) 0.0309441965036351 13 0.0167710831722114 1.16454067795252 519 0.308354373130189 4 4 0 -6.83218344410325 LTS-032 chr8 97623944 97978271 354328 * c(CPQ, SDC2) NA 0 NA 1.12528081272397 29 0.256013878356877 4 NA NA -5.77548981747101 LTS-032 chr8 97978272 98041579 63308 * CPQ NA 0 NA 0.467 1 NA NA NA NA NA LTS-032 chr8 98041580 98288164 246585 * c(CPQ, TSPYL5) 0.155 1 NA 0.395643035743239 67 0.0989756376238994 1 1 0 -5.85703313781601 LTS-032 chr8 98288165 99102195 814031 * c(ERICH5, SNORA72, MATN2, LAPTM4B, RPL30, TSPYL5, MTDH) 0.123799902430622 18 0.0689628108551685 0.385443676679362 458 0.128782157941927 1 1 0 -6.81415050209661 LTS-032 chr8 99102196 99118622 16427 * c(RIDA, ERICH5) 0.095 1 NA 0.348014075452891 43 0.0912302527973624 1 1 0 -5.7672925107576 LTS-032 chr8 99118623 101721839 2603217 * c(MIR875, MIR4471, RIDA, POP1, OSR2, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, KCNS2, POLR2K, SPAG1, STK3, MIR599, NIPAL2) 0.338634155184241 9 0.192589445309042 0.367160067234262 1597 0.0964321108031373 1 1 0 -7.40799488793788 LTS-032 chr8 101721840 101936283 214444 * c(PABPC1, YWHAZ) 0.02 1 NA 0.381358720670533 70 0.139132929422511 1 1 0 -5.77619482164825 LTS-032 chr8 101936284 105010387 3074104 * c(MIR3151, BAALC-AS1, MIR5680, CTHRC1, BAALC-AS2, DCAF13, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, KLF10, YWHAZ, BAALC, GRHL2, SLC25A32, FZD6, NACAP1, NCALD, RIMS2) 0.107980894364708 29 0.0532907491117051 0.362177963379279 1665 0.956485775937657 1 1 0 -6.77957793265843 LTS-032 chr8 105010388 105053611 43224 * RIMS2 NA 0 NA 0.423293498583846 21 0.0536511660548736 1 NA NA -5.95173667618963 LTS-032 chr8 105053612 105080650 27039 * RIMS2 NA 0 NA 0.604 1 NA NA NA NA NA LTS-032 chr8 105080651 105907833 827183 * c(DPYS, LRP12, DCSTAMP, RIMS2) 0.058 1 NA 0.668104089794177 367 0.166846722159067 2 2 0 -5.79384646372698 LTS-032 chr8 105907834 105908048 215 * character(0) NA 0 NA 0.457919148044867 5 0.112161490717626 1 NA NA -5.76492725827176 LTS-032 chr8 105908049 106003721 95673 * character(0) NA 0 NA 1.013 1 NA NA NA NA NA LTS-032 chr8 106003722 107278008 1274287 * ZFPM2 NA 0 NA 1.27551373328406 156 0.275446777158758 4 NA NA -5.80906636337444 LTS-032 chr8 107278009 123964219 16686211 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, ABRA, TMEM74, SLC30A8, EXT1, ZHX2, KCNV1, MTBP, ANGPT1, MRPL13, HAS2, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRHR, TRPS1, COL14A1, DSCC1, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2) 0.0536054220691791 104 0.0238934164783569 0.940148783500928 4425 0.95016408836162 3 3 0 -6.76196930880604 LTS-032 chr8 123964220 126142403 2178184 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, ZHX2, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.0583314453122082 35 0.0347236872146596 0.866894442343003 2155 0.234957870776161 3 3 0 -6.85060159649909 LTS-032 chr8 126142404 126445537 303134 * c(TRIB1, NSMCE2) 0.06 1 NA 0.930254446425786 63 0.233183300458895 3 3 0 -5.76507252784623 LTS-032 chr8 126445538 136533497 10087960 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, ADCY8, TMEM71, FAM84B, EFR3A, LRRC6, LINC01591, ASAP1-IT1, KCNQ3, MIR30B, MIR30D, MYC, ASAP1, PHF20L1, FAM49B, POU5F1B, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, TG, CASC8, LINC00977, OC90, WISP1, HPYR1) 0.0481126243472338 90 0.0279648633649661 0.907176065613426 2822 0.332601776308863 3 3 0 -6.74030571008042 LTS-032 chr8 136533498 140945605 4412108 * c(KHDRBS3, COL22A1, FAM135B, KCNK9, TRAPPC9) 0.0550645970462919 15 0.0267727651239268 1.04555969876663 733 0.339461167015411 3 3 0 -7.13364800173476 LTS-032 chr8 140945606 145170353 4224748 * c(MIR937, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR4472-1, MIR4664, PTP4A3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, SCRIB, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GRINA, GPIHBP1, NRBP2, WDR97, SPATC1, MROH5, MAFA, LY6E, LY6H, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLURP1, SLC45A4, PTK2, ADGRB1, NA NA NA NA NA NA NA NA NA LTS-032 LINC00051, MROH6, PYCRL, LYNX1, MIR661, TSTA3, LINC01300, RHPN1-AS1, GSDMD, ZNF696, PSCA, SHARPIN, EPPK1, TRAPPC9, MAF1, PARP10, TIGD5, LY6D, JRK, GPAA1, NAPRT, ZNF623) 0.0505241782945081 255 0.0295963462019727 0.944319138692922 5686 0.387615087543125 3 3 0 -6.74885272233746 LTS-032 NA NA NA NA LTS-032 chr8 145170354 145170440 87 * WDR97 0.056 1 NA 1.37895250005146 3 0.283627102607162 5 5 0 -5.764412695333 LTS-032 chr8 145170441 145624820 454380 * c(MIR939, ADCK5, BOP1, FBXL6, CPSF1, HSF1, WDR97, TMEM249, HGH1, SCX, MROH1, SLC52A2, SCRT1, DGAT1) 0.221302591901965 9 0.198913926108757 0.916553624601268 621 0.210519210964295 3 2 1 -6.97072879407749 LTS-032 chr8 145624821 145639320 14500 * c(MIR1234, CPSF1, SLC39A4) 0.014 1 NA 0.954069236101719 79 0.197712748038091 3 3 0 -5.76475472966656 LTS-032 chr8 145639321 145682618 43298 * c(TONSL, CYHR1, VPS28, SLC39A4) 0.0418286770848278 4 0.0182665450117603 0.93612262558895 356 0.18609805767589 4 4 0 -6.80756681105791 LTS-032 chr8 145682619 146115843 433225 * c(MFSD3, GPT, COMMD5, ZNF517, C8orf82, LRRC24, CYHR1, ZNF250, RPL8, ZNF7, ARHGAP39, ZNF34, PPP1R16A, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.051676458187966 29 0.0197567722379209 0.870549445078764 1335 0.218154754026716 3 3 0 -6.75889968181707 LTS-032 chr8 146115844 146280905 165062 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF250, C8orf33, ZNF16) NA 0 NA 0.839168007752383 302 0.141953543989133 3 NA NA -5.80306732741009 LTS-032 chr9 14732 116211 101480 * c(WASH1, FAM138C) 0.254 1 NA 0.742833966538997 3 0.291143149212434 2 2 0 -5.77984217140339 LTS-032 chr9 116212 8492897 8376686 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.355418721103026 99 0.0562780464448357 0.900781987254568 4152 0.248331277175536 3 2 1 -6.76741583659683 LTS-032 chr9 8492898 8492903 6 * PTPRD NA 0 NA 1.071 1 NA NA NA NA NA LTS-032 chr9 8492904 14617758 6124855 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.353544243893699 12 0.116721469812334 1.02721567139495 800 0.290040348211116 3 2 1 -7.2473792957242 LTS-032 chr9 14617759 15267981 650223 * c(TTC39B, FREM1, ZDHHC21, LOC389705, CER1) 0.303300505996524 6 0.152297953586602 0.948479418999819 422 0.278379096741527 3 2 1 -6.79226171141155 LTS-032 chr9 15267982 16699287 1431306 * c(C9orf92, PSIP1, TTC39B, CCDC171, BNC2, SNAPC3) 0.4 1 NA 0.908250130070688 701 0.198312625868775 3 3 0 -5.76653460747158 LTS-032 chr9 16699288 17135415 436128 * c(BNC2, CNTLN) 0.415 1 NA 0.894924634363615 35 0.199901223507171 3 3 0 -5.76838502615234 LTS-032 chr9 17135416 17135434 19 * CNTLN 0.407 1 NA 0.299 1 NA NA NA NA NA LTS-032 chr9 17135435 43861081 26725647 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, GNE, FAM95C, MIR3152, LOC100506422, EBLN3P, MIR4667, MIR4473, MIR4540, MIR4475, MIR4474, MIR4476, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, RRAGA, CCL27, PTENP1, DCTN3, CLTA, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, FAM201A, TRMT10B, SAXO1, LINC00961, ATP8B5P, ELAVL2, C9orf72, FAM219A, CCDC107, NA NA NA NA NA NA NA NA NA LTS-032 FANCG, ALDH1B1, FRMPD1, PHF24, DDX58, ANKRD18A, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, ZNF658, SPAG8, FBXO10, B4GALT1, DNAI1, SIT1, SPINK4, LOC286297, TUSC1, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IGFBPL1, IL11RA, AQP3, AQP7, ENHO, FAM205BP, SPATA31A6, GLIDR, FAM221B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 OR13J1, HACD4, LINC01242, TMEM215, TOMM5, FAM74A1, ZNF658B, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, AQP7P3, ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, NPR2, PAX5, EXOSC3, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, GBA2, RMRP, RPS6, CCL19, CCL21, DMRTA1, NA, NA, LOC642929, LINC01189, POLR1E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SH3GL2, SHB, HRCT1, LRRC19, NOL6, NA, FGF7P3, SCARNA8, MSMP, TEK, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, MOB3B, CAAP1, CNTNAP3, IFT74, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, ADAMTSL1, LINC00950, PLAA, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.43583219952994 213 0.0758131540981361 0.647934760665009 12171 0.206436193727006 2 1 1 -6.77148953737098 LTS-032 NA NA NA NA LTS-032 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.571341279839335 8 0.271637363304199 2 NA NA -5.79847684088288 LTS-032 chr9 65602571 66457127 854557 * LOC286297 0.479 1 NA 0.846040193398136 3 0.201668870511374 3 3 0 -5.84564451663023 LTS-032 chr9 66457128 69002317 2545190 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.320476500773222 21 0.111474618080487 0.985992071173727 68 0.433044326758433 3 2 1 -6.8143456111256 LTS-032 chr9 69002318 69120851 118534 * PGM5P2 NA 0 NA 0.994652113885895 3 0.0207846096908265 3 NA NA -6.68711635084308 LTS-032 chr9 69120852 69256369 135518 * c(LOC440896, PGM5P2, CBWD6, FOXD4L6) NA 0 NA 0.606 1 NA NA NA NA NA LTS-032 chr9 69256370 70971798 1715429 * c(LOC100133920, FOXD4L3, PGM5-AS1, CBWD6, FOXD4L5, ANKRD20A4) 0 1 NA 0.544698685753487 14 0.311236209368348 2 2 0 -6.03572601135617 LTS-032 chr9 70971799 88968178 17996380 * c(VPS13A-AS1, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, RASEF, PRUNE2, TMEM252, ALDH1A1, SMC5, VPS13A, AGTPBP1, TMEM2, FXN, MAMDC2, FRMD3, GCNT1, OSTF1, GNAQ, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, SPATA31D5P, PTAR1, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, MIR204, MIR7-1, IDNK, FOXB2, NTRK2, C9orf135-AS1, PCA3, ABHD17B, PCSK5, GOLM1, PGM5, NMRK1, NA NA NA NA NA NA NA NA NA LTS-032 C9orf40, RFK, KIF27, PRKACG, PGM5-AS1, NAA35, RORB, SLC28A3, RPSAP9, KLF9, TLE1, TLE4, ZFAND5, ZCCHC6, RMI1, TRPM3, GKAP1, ISCA1, PIP5K1B, CEP78, C9orf64, FAM189A2, TJP2, GDA, GNA14) 0.0706150775843385 169 0.0477969017317985 0.641224912283779 7837 0.193247914976246 2 2 0 -6.73314572249144 LTS-032 NA NA NA NA LTS-032 chr9 89559236 90062968 503733 * c(GAS1RR, GAS1, C9orf170, LOC440173, LOC494127) 0.113 1 NA 1.22640729353518 140 0.284365637564278 4 4 0 -5.76724712695333 LTS-032 chr9 90062969 90113850 50882 * DAPK1 NA 0 NA 0.49 1 NA NA NA NA NA LTS-032 chr9 90113851 95036860 4923010 * c(LOC100128076, UNQ6494, LOC100129316, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, CTSL, CTSLP8, NXNL2, LINC00475, DAPK1, S1PR3, CDK20, C9orf47, SPATA31E1, LOC286238, MIR4290HG, IARS, LINC01501, CTSL3P, LOC392364, SPATA31C1, NFIL3, ROR2, SHC3, DIRAS2, AUH, SPATA31C2, SYK, SECISBP2) 0.0594901807858651 36 0.0314296897347937 0.662247799709667 2117 0.230899182805718 2 2 0 -6.85593983127067 LTS-032 chr9 95036861 95040025 3165 * IARS NA 0 NA 1.183 1 NA NA NA NA NA LTS-032 chr9 95040026 95083966 43941 * c(SNORA84, IARS, NOL8) NA 0 NA 1.18827341477397 175 0.272308648773858 4 NA NA -5.76441591052864 LTS-032 chr9 95083967 95083972 6 * NOL8 NA 0 NA 0.78 1 NA NA NA NA NA LTS-032 chr9 95083973 117085526 22001554 * c(LOC100128361, FAM225B, LINC00476, LOC100132077, LOC100132781, LINC00092, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3134, CCDC180, LOC100499484, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CTSV, CYLC2, MIRLET7DHG, FAM120AOS, NA NA NA NA NA NA NA NA NA LTS-032 ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, ZNF883, ZNF169, ECM2, ABCA1, LPAR1, AAED1, ZNF367, ANKS6, SUSD3, ALAD, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, FAM120A, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, INVS, GNG10, FAM225A, LOC286359, OR13C9, OR13D1, NA, HSD17B3, GAS2L1P2, MURC, ERCC6L2, OR13C2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, MIR32, LOC441454, LOC441455, NUTM2G, STX17-AS1, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NINJ1, OMD, OGN, ORM1, TRMO, PHF2, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, FAM206A, STX17, NOL8, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 INIP, ZNF462, RAD23B, RGS3, MIR455, SUSD1, IPPK, WNK2, LRRC37A5P, TAL2, TGFBR1, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, SVEP1, NR4A3, HDHD3, ZNF484, FSD1L, HSDL2, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, PTBP3) 0.0743892732729257 282 0.0384514503362658 0.650180355155453 15868 0.676268097900317 2 2 0 -6.74595437276558 LTS-032 NA NA NA NA LTS-032 chr9 117085527 117085561 35 * ORM1 NA 0 NA 0.238 1 NA NA NA NA NA LTS-032 chr9 117085562 117092182 6621 * c(ORM1, ORM2) 0.0436195784027772 3 0.00305505046330389 0.261101685788173 40 0.433930940978471 3 3 0 -8.21411408496851 LTS-032 chr9 117092183 117092184 2 * c(ORM1, ORM2) NA 0 NA 0.52 1 NA NA NA NA NA LTS-032 chr9 117092185 125239253 8147069 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, WHRN, PHF19, FBXW2, LHX6, GGTA1P, GSN, TNC, OR1J1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, CDK5RAP2, PSMD5, PTGS1, LINC00474, TLR4, TRAF1, C5, AKNA, MRRF, RBM18, TNFSF8, ATP6V1G1, TNFSF15) 0.0786484735969548 70 0.0525751753998309 0.652822441654976 4048 0.187650077557405 2 2 0 -6.79171189308316 LTS-032 chr9 125239254 125240287 1034 * OR1J1 NA 0 NA 0.656169277643559 19 0.111722033930184 2 NA NA -5.76443574020119 LTS-032 chr9 125240288 125272997 32710 * character(0) NA 0 NA 2.214 1 NA NA NA NA NA LTS-032 chr9 125272998 125282393 9396 * c(OR1J4, OR1J2) 0.418 1 NA 1.88959217928984 39 0.446058025914937 7 7 0 -5.76453729880047 LTS-032 chr9 125282394 128069955 2787562 * c(LOC100129034, MIR181A2HG, RABEPK, ZBTB6, NEK6, RPL35, OR1L8, OR1N2, OR1N1, OR1Q1, OLFML2A, RABGAP1, NR5A1, OR1L4, GAPVD1, NR6A1, OR1L3, OR1L1, GOLGA1, GPR21, CRB2, SCAI, HSPA5, ADGRD2, OR1B1, OR1L6, OR5C1, OR1K1, WDR38, MIR181A2, MIR181B2, PDCL, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, SNORD90, MIR601, MIR600HG, ARPC5L, LHX2) 0.342503122766259 61 0.0634888097364302 1.70399353330748 3027 0.500073306765312 6 4 2 -6.736919693463 LTS-032 chr9 128069956 128509657 439702 * c(GAPVD1, PBX3, MAPKAP1) 0.446 1 NA 1.66192727667282 347 0.354889561492338 6 6 0 -5.76935556274757 LTS-032 chr9 128509658 128510915 1258 * PBX3 NA 0 NA 1.63234709365098 13 0.226001673467823 6 NA NA -5.76447556728662 LTS-032 chr9 128510916 128605960 95045 * PBX3 NA 0 NA 1.254 1 NA NA NA NA NA LTS-032 chr9 128605961 132902239 4296279 * c(SLC25A25-AS1, MIR3154, SH2D3C, MIR3911, LOC100506100, LINC00963, MIR3960, MIR219B, MIR4672, CDK9, ZER1, USP20, SLC27A4, SLC25A25, CRAT, PTRH1, PIP5KL1, ASB6, TTC16, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, DOLK, FNBP1, ZBTB43, ANGPTL2, NUP188, FPGS, PHYHD1, CIZ1, SNORA65, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, GOLGA2, CFAP157, NTMT1, PKN3, SLC2A8, ST6GALNAC6, SWI5, C9orf50, PTGES2-AS1, IER5L, LCN2, FAM102A, NA NA NA NA NA NA NA NA NA LTS-032 LMX1B, ZBTB34, MIR199B, MIR219A2, C9orf106, ODF2, PBX3, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, SH3GLB2, DOLPP1, GPR107, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, ZNF79, C9orf16, PTGES2, URM1, GARNL3, ZDHHC12, MIGA2, DPM2, KYAT1, MVB12B, WDR34, LRSAM1, PTGES, RALGPS1) 0.443022543707253 77 0.0831306258663905 1.19393291740999 6863 0.318160548624759 4 2 2 -6.740578172389 LTS-032 NA NA NA NA LTS-032 chr9 132902240 133554065 651826 * c(LOC100272217, NCS1, ASS1, GPR107, PRDM12, FUBP3) 0.455937768866326 15 0.0462330535233748 1.32423248701021 665 0.320229212130119 4 2 2 -6.9099244275913 LTS-032 chr9 133554066 133558414 4349 * PRDM12 NA 0 NA 1.25417352606832 37 0.285217689897788 4 NA NA -5.76449012997551 LTS-032 chr9 133558415 133569096 10682 * character(0) NA 0 NA 0.714 1 NA NA NA NA NA LTS-032 chr9 133569097 133710246 141150 * c(EXOSC2, ABL1) 0.084 1 NA 0.635976159064029 89 0.110342040649189 2 2 0 -5.76491853173113 LTS-032 chr9 133710247 136233588 2523342 * c(LAMC3, CEL, CELP, POMT1, SPACA9, AK8, SETX, ABL1, GBGT1, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, FAM78A, RAPGEF1, OBP2B, QRFP, CFAP77, BARHL1, RALGDS, RPL7A, DDX31, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, TTF1, NUP214, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, GTF3C5, GTF3C4, MED27) 0.0656464958978741 102 0.0296044475689211 0.654549604934553 3866 0.203176639071249 2 2 0 -6.76124603075563 LTS-032 chr9 136233589 136234074 486 * SURF4 NA 0 NA 1.388 1 NA NA NA NA NA LTS-032 chr9 136234075 138415238 2181164 * c(RNU6ATAC, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, C9orf116, DBH-AS1, C9orf62, DBH, STKLD1, SARDH, FCN1, FCN2, LINC00094, TMEM8C, LCN1, LOC401557, MRPS2, REXO4, RXRA, FAM163B, SURF4, VAV2, BRD3, ADAMTSL2, PPP1R26) 0.066446526891711 105 0.030675072506191 0.720141489906962 2313 0.424186271216296 2 2 0 -6.83716594046816 LTS-032 chr9 138415239 138441862 26624 * c(OBP2A, LCN1) NA 0 NA 0.749746092686977 43 0.109054483624797 2 NA NA -5.79692991170687 LTS-032 chr9 138441863 138453550 11688 * character(0) NA 0 NA 1.545 1 NA NA NA NA NA LTS-032 chr9 138453551 138515929 62379 * c(LINC01502, GLT6D1, PAEP) 0.443 1 NA 1.27011817060487 51 0.390511945537961 4 4 0 -5.76537105744126 LTS-032 chr9 138515930 140374964 1859035 * c(LOC100128593, STPG3-AS1, CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR3621, MIR4673, MIR4674, MIR4479, TUBB4B, UBAC1, AGPAT2, SDCCAG3, NOXA1, MAN1B1, NACC2, LCN8, FAM69B, SLC34A3, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, NELFB, NSMF, GPSM1, DKFZP434A062, NDOR1, LCN12, C9orf142, TPRN, GRIN1, PHPT1, ANAPC2, DPP7, GLT6D1, PNPLA7, CYSRT1, ENTPD8, LCN15, C9orf172, LRRC26, LCN9, LCNL1, C9orf139, NA NA NA NA NA NA NA NA NA LTS-032 FAM166A, SOHLH1, MIR126, LCN10, STPG3, NRARP, NOTCH1, EGFL7, FBXW5, TOR4A, EXD3, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, RNF224, SNAPC4, SNORA17A, SNORA17B, TRAF2, RNF208, DNLZ, C8G, LHX3, CCDC183, SNHG7, TMEM141, SSNA1, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, TMEM203, ENTPD2, SEC16A) 0.445529160942669 201 0.0644868126439439 1.22533475005873 5796 0.635774056431788 4 2 2 -6.75511310089724 LTS-032 NA NA NA NA LTS-032 chr9 140374965 140375379 415 * PNPLA7 NA 0 NA 1.396 1 NA NA NA NA NA LTS-032 chr9 140375380 140710530 335151 * c(ZMYND19, PNPLA7, EHMT1-IT1, MRPL41, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.409051979388553 10 0.0475576842721903 1.4860922012584 437 0.331719854198435 5 3 2 -6.75124874618185 LTS-032 chr9 140710531 140711773 1243 * EHMT1 NA 0 NA 0.818 1 NA NA NA NA NA LTS-032 chr9 140711774 140777306 65533 * c(MIR602, CACNA1B, EHMT1) 0.433 1 NA 0.756176734828452 65 0.229501914689516 2 2 0 -5.78455873110884 LTS-032 chr9 140777307 140881314 104008 * CACNA1B 0.075 1 NA 0.671352663445123 65 0.113213510847697 2 2 0 -5.7745098423245 LTS-032 chr9 140881315 141070283 188969 * c(TUBBP5, CACNA1B) 0.203974132001008 9 0.162510597945009 0.669439804325043 263 0.207905760971405 2 2 0 -7.11990718523161 LTS-032 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.491751733957179 5 0.0311159123279392 2 NA NA -5.82827331088777 LTS-032 chr10 94832 94870 39 * TUBB8 0.143 1 NA 0.188 1 NA NA NA NA NA LTS-032 chr10 94871 17953120 17858250 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, TUBB8, IL2RA, NA NA NA NA NA NA NA NA NA LTS-032 IL15RA, ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 FBXO18, RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.07056812855895 225 0.0310162578975649 0.633485752382182 8905 0.216435719092457 2 2 0 -6.76857559390752 LTS-032 NA NA NA NA LTS-032 chr10 17953121 18152622 199502 * c(MRC1, NA, TMEM236) NA 0 NA 0.107076516072298 85 0.131760422599449 0 NA NA -5.97060326307312 LTS-032 chr10 18152623 18155476 2854 * MRC1 NA 0 NA 0.55 1 NA NA NA NA NA LTS-032 chr10 18155477 28228865 10073389 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, YME1L1, ENKUR, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, LINC00264, BMI1, MIR603, LINC00202-2, NA NA NA NA NA NA NA NA NA LTS-032 CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.0706602100767966 88 0.0374579370503352 0.651818786737406 4732 0.242865684244495 2 2 0 -6.75949013362627 LTS-032 NA NA NA NA LTS-032 chr10 28228866 28233931 5066 * ARMC4 0.458 1 NA 0.707143603470345 22 0.172130481314039 2 2 0 -5.76538548195879 LTS-032 chr10 28233932 33468124 5234193 * c(MIR938, LINC00837, MIR5586, LYZL2, MAP3K8, MPP7, WAC-AS1, ZNF438, ZEB1-AS1, NA, BAMBI, ITGB1, KIF5B, PTCHD3P1, WAC, ARMC4, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, LYZL1, NRP1, ARHGAP12) 0.12596739118299 42 0.10675970010084 0.633101507776554 2071 0.399104877474525 2 2 0 -6.89665502620901 LTS-032 chr10 33468125 33468169 45 * NRP1 0.045 1 NA 0.047 1 NA NA NA NA NA LTS-032 chr10 33468170 38645403 5177234 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, PARD3, ZNF248, ZNF33A, ZNF37A, FZD8, CUL2, NRP1, ANKRD30A) 0.0774954255492113 30 0.0663970986764006 0.626813034138722 1466 0.177323664211461 2 2 0 -6.79265791997915 LTS-032 chr10 38645404 38740384 94981 * c(HSD17B7P2, SEPT7P9, LINC00999) NA 0 NA 0.639433321059748 55 0.168000274570884 2 NA NA -5.76442989479395 LTS-032 chr10 42379936 42907201 527266 * LOC441666 0.441 1 NA 1.70182509536 6 0.91034191378844 6 6 0 -5.76464654431727 LTS-032 chr10 42907202 46934817 4027616 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.406474179576188 47 0.0503767306017764 1.46578748170108 1809 0.404770730369842 5 3 2 -6.74067402116996 LTS-032 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 8.283 1 NA NA NA NA NA LTS-032 chr10 46952744 47915827 963084 * c(NA, PTPN20, GLUD1P7, FAM35DP, NPY4R, NA, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.375902536391905 34 0.0528149832897166 1.87986057786445 302 0.787708074063467 8 5 3 -6.7709111716205 LTS-032 chr10 47915828 47915891 64 * c(PTPN20, GLUD1P7, NA, NA, NA) 0.13 1 NA 0.117 1 NA NA NA NA NA LTS-032 chr10 47915892 48055039 139148 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.14373653764842 40 0.193208454916657 0 NA NA -6.22244923842635 LTS-032 chr10 48055040 49392789 1337750 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, RBP3, NA, NA, FRMPD2B) 0.411706486658169 7 0.0413941564774086 1.62540627660009 309 0.554471395296071 5 3 2 -6.80097435747654 LTS-032 chr10 49392790 49482948 90159 * c(FRMPD2, NA) NA 0 NA 1.71624231995054 105 0.340635816560457 6 NA NA -5.76453628898332 LTS-032 chr10 49482949 49609609 126661 * c(NA, MAPK8) NA 0 NA 0.637 1 NA NA NA NA NA LTS-032 chr10 49609610 49618017 8408 * c(NA, MAPK8) 0.082 1 NA 0.53343216452364 11 0.146851873421052 2 2 0 -5.7723512272046 LTS-032 chr10 49618018 50950976 1332959 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, DRGX, SLC18A3) 0.0686276353912984 37 0.0278880753144555 0.675784723642892 1677 0.300906499283294 2 2 0 -6.75852511251525 LTS-032 chr10 50950977 50960166 9190 * c(NA, OGDHL) 0.107 1 NA 0.760849767568772 51 0.227655877216848 2 2 0 -5.76750921523171 LTS-032 chr10 50960167 51124108 163942 * c(NA, OGDHL, PARG) 0.129 1 NA 0.653244024903296 76 0.122163246403858 2 2 0 -5.76660219226507 LTS-032 chr10 51124109 51362782 238674 * c(NA, NA, PARGP1, PARG) NA 0 NA 1.776 1 NA NA NA NA NA LTS-032 chr10 51362783 51592690 229908 * c(TIMM23, MSMB, NA, AGAP7P, NA, PARGP1, NCOA4, PARG) NA 0 NA 1.53655866561996 183 0.371775892895063 5 NA NA -5.7664338702467 LTS-032 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.294 1 NA NA NA NA NA LTS-032 chr10 51603249 52065890 462642 * c(TIMM23, SGMS1, NA, FAM21A, AGAP6, NA, ASAH2, PARG) 0.24208116877766 8 0.0751930847884299 0.706294708746246 110 0.58662516900268 4 3 1 -7.02193804648292 LTS-032 chr10 52065891 52086939 21049 * SGMS1 0.055 1 NA 0.71376166476168 45 0.403743561727446 2 2 0 -5.76529431678797 LTS-032 chr10 52086940 63168449 11081510 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.0874506969011205 40 0.089719848874434 0.685030407556302 2778 0.224115996021213 2 2 0 -7.279317385952 LTS-032 chr10 63168450 71244832 8076383 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.072495610389379 51 0.035372216858577 0.624240356440146 3807 0.196789311976324 2 2 0 -6.82691462376738 LTS-032 chr10 71244833 71244892 60 * TSPAN15 NA 0 NA 0.743 1 NA NA NA NA NA LTS-032 chr10 71244893 73590984 2346092 * c(COL13A1, ADAMTS14, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, C10orf105, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, SLC29A3, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, UNC5B-AS1, AIFM2, SGPL1) 0.0777249935597626 85 0.0334315932700108 0.665937612318963 2669 0.21668002913164 2 2 0 -6.80633801662531 LTS-032 chr10 73590985 74293584 702600 * c(MIR1256, MICU1, ANAPC16, ASCC1, DDIT4, DNAJB12, PSAP, CHST3, SPOCK2) 0.0849086763842624 12 0.0196705825582726 0.612813422453079 614 0.136622531206163 2 2 0 -7.10399920837084 LTS-032 chr10 74293585 74293601 17 * c(MIR1256, MICU1) 0.067 1 NA 1.461 1 NA NA NA NA NA LTS-032 chr10 74293602 74767680 474079 * c(MIR1256, MIR4676, MICU1, OIT3, P4HA1, PLA2G12B, MCU) 0.239958594847683 9 0.148431615380432 0.647027434699193 227 0.139835058386148 2 2 0 -7.43238523781561 LTS-032 chr10 74767681 75012343 244663 * c(ECD, DNAJC9, NUDT13, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16) 0.061 1 NA 0.609447138852873 467 0.128175497633382 2 2 0 -5.78770475689742 LTS-032 chr10 75012344 77167791 2155448 * c(ZNF503-AS2, CHCHD1, MSS51, CFAP70, COMTD1, ADK, SAMD8, USP54, FUT11, ZSWIM8, KAT6B, ZNF503-AS1, AP3M1, GLUD1P3, ANXA7, DUPD1, C10orf55, DNAJC9-AS1, MRPS16, DUSP13, PLAU, PPP3CB, MYOZ1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, ZNF503, NDST2, SEC24C) 0.0606524394821824 14 0.0428511992215536 0.618894241866993 2360 0.155146389314694 2 2 0 -6.82973053982738 LTS-032 chr10 77167792 81074352 3906561 * c(DLG5-AS1, ZNF503-AS2, LINC00856, POLR3A, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.0647281221351693 22 0.0309738403798881 0.714068121060075 1078 0.198443990507543 2 2 0 -7.36754605442183 LTS-032 chr10 81074353 81145266 70914 * c(PPIF, ZCCHC24, ZMIZ1) 0.061064911488377 12 0.0274915965121686 0.630178351873092 180 0.172607833045183 2 2 0 -6.79686651911963 LTS-032 chr10 81145267 81145701 435 * ZCCHC24 0.061 1 NA 0.61927164549888 11 0.259691110219955 2 2 0 -5.76441490982194 LTS-032 chr10 81145702 82187293 1041592 * c(BMS1P21, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, ANXA11, MAT1A, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, FAM213A, DYDC2, MBL1P) 0.19616798237322 9 0.185952353515028 0.628184309467842 907 0.251042925420929 2 2 0 -7.00138484475616 LTS-032 chr10 82187294 82192713 5420 * FAM213A 0.061 1 NA 0.555935561387028 19 0.209529422629301 2 2 0 -5.76592542826301 LTS-032 chr10 82192714 99362009 17169296 * c(C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, FRAT1, FAS-AS1, MIR3157, SLIT1-AS1, GRID1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR5692C2, LINC00502, RPP30, SORBS1, NRG3, ADIRF, LDB3, HOGA1, PIK3AP1, FRA10AC1, ANKRD22, NUDT9P1, AGAP11, ACSM6, LIPJ, CFL1P1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, SLC35G1, LINC00858, DNTT, CPEB3, WAPL, RRP12, TBC1D12, FRAT2, IFIT5, LRIT1, NA NA NA NA NA NA NA NA NA LTS-032 TCTN3, C10orf12, ANKRD2, MYOF, PIPSL, ANKRD1, GHITM, GLUD1, FLJ37201, GRID1, BLNK, HELLS, HHEX, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, LIPA, MIR107, C10orf62, LINC00863, IFIT1B, MIR346, EXOSC1, PLCE1, PDE6C, PGAM1, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, PPP1R3C, CEP55, RNLS, PI4K2A, TM9SF3, PTEN, STAMBPL1, ALDH18A1, ACTA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RBP4, RGR, MMS19, FAM25A, NOC3L, LIPK, LIPN, LINC00865, BMPR1A, SLIT1, SNCG, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, MMRN2, UBTD1, TNKS2, TSPAN14, ZDHHC16, FAM213A, PCGF5, LCOR, ATAD1, ARHGAP19, LIPF, CH25H, BTAF1, PAPSS2, PDLIM1, LGI1, CDHR1, OPALIN, OPN4, ENTPD1, MINPP1, KIF20B, ZNF518A) 0.0756744171823441 236 0.0405793964266681 0.644585054905532 11159 0.21081247096943 2 2 0 -6.75009339839647 LTS-032 NA NA NA NA LTS-032 chr10 99362010 99371189 9180 * c(HOGA1, PI4K2A) NA 0 NA 0.371 1 NA NA NA NA NA LTS-032 chr10 99371190 99410842 39653 * c(HOGA1, MORN4, PI4K2A) NA 0 NA 0.334084382226756 89 0.0494026678986633 1 NA NA -5.84268688699418 LTS-032 chr10 99410843 99415990 5148 * PI4K2A NA 0 NA 0.567 1 NA NA NA NA NA LTS-032 chr10 99415991 112271288 12855298 * c(TLX1NB, MIR936, DNMBP-AS1, KCNIP2-AS1, MIR1287, MIR1307, MIR3158-1, MIR3158-2, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, MIR4482, MIR4685, ACTR1A, SMNDC1, NPM3, ERLIN1, LBX1, MGEA5, CHUK, SORCS1, ZFYVE27, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, CYP17A1, NKX2-3, CFAP58, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, DNMBP, CALHM1, DPCD, SEC31B, CNNM1, R3HCC1L, POLL, NA NA NA NA NA NA NA NA NA LTS-032 GOT1, BLOC1S2, KCNIP2, TLX1, HPS1, LBX1-AS1, GOLGA7B, ARL3, MXI1, NDUFB8, NFKB2, PAX2, CALHM2, CUTC, SUFU, PITX3, CNNM2, WBP1L, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, ENTPD7, AS3MT, MIR146B, SEMA4G, AVPI1, HPSE2, SCD, SFRP5, FBXW4, SNORA12, TAF5, MIR608, MIR609, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, OBFC1, CFAP43, TRIM8, KAZALD1, SFXN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SLC25A28, ELOVL3, MARVELD1, PCGF6, LOXL4, LZTS2, MRPL43, PYROXD2, USMG5, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, INA, NEURL1, NOLC1, GSTO1, SH3PXD2A, SLK) 0.0669006843220574 153 0.029039474989592 0.644006001821843 9778 0.181346589763359 2 2 0 -6.74381495067403 LTS-032 NA NA NA NA LTS-032 chr10 112271289 112327690 56402 * c(DUSP5, SMC3) NA 0 NA 0.599307858536294 9 0.0996456220814542 2 NA NA -5.7800984442402 LTS-032 chr10 112327691 112328631 941 * SMC3 NA 0 NA 0.819 1 NA NA NA NA NA LTS-032 chr10 112328632 112404301 75670 * c(RBM20, SMC3) NA 0 NA 0.812783648149222 142 0.216125949809829 3 NA NA -5.77858850371339 LTS-032 chr10 112404302 112595719 191418 * RBM20 0.426 1 NA 1.16352403784639 117 0.200210327440108 4 4 0 -5.76621162814413 LTS-032 chr10 112595720 112840621 244902 * c(MIR4680, ADRA2A, PDCD4, RBM20, PDCD4-AS1, RPL13AP6, SHOC2, BBIP1) 0.44970908448572 7 0.0231619556703701 1.08756076956186 383 0.260520788080275 4 2 2 -7.02527331368327 LTS-032 chr10 113909622 114187827 278206 * c(GUCY2GP, ACSL5, GPAM, TECTB) 0.0651133007754009 2 0.00565685424949239 0.668739269005298 420 0.371789749146179 2 2 0 -7.16014742422357 LTS-032 chr10 114187828 114188086 259 * ACSL5 0.054 1 NA 0.715834317103827 7 0.342470158588759 2 2 0 -5.76442602885676 LTS-032 chr10 114188087 118139534 3951448 * c(MIR2110, MIR4295, MIR4483, TRUB1, VTI1A, ADRB1, ATRNL1, GFRA1, HABP2, VWA2, NHLRC2, CCDC172, ABLIM1, NRAP, ACSL5, CCDC186, TDRD1, FAM160B1, ZDHHC6, TCF7L2, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.0697584287479724 69 0.0372266393446527 0.644710755256564 2721 0.187232284322108 2 2 0 -6.73481847450632 LTS-032 chr10 118139535 118139584 50 * CCDC172 NA 0 NA 0.712 1 NA NA NA NA NA LTS-032 chr10 118139585 119134964 995380 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, HSPA12A, KCNK18, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.067407796313543 25 0.0533530067881214 0.711629996772396 1119 0.227191105505555 2 2 0 -6.85675449161133 LTS-032 chr10 119134965 119806092 671128 * c(EMX2OS, EMX2, RAB11FIP2) NA 0 NA 0.651969141992849 209 0.144663206676213 2 NA NA -5.76950964497449 LTS-032 chr10 119806093 120065386 259294 * c(RAB11FIP2, CASC2) NA 0 NA 1.187 1 NA NA NA NA NA LTS-032 chr10 120065387 120917445 852059 * c(SFXN4, CACUL1, PRLHR, NANOS1, FAM204A, SNORA19, EIF3A) 0.433 1 NA 1.39051660126667 671 0.289907094141057 5 5 0 -5.78264274398074 LTS-032 chr10 120917446 121679137 761692 * c(MIR4681, PRDX3, SEC23IP, SFXN4, INPP5F, GRK5, RGS10, TIAL1, MCMBP, BAG3) 0.391206131647322 15 0.119939151239285 1.3898756813007 744 1.30559554309882 5 3 2 -6.73769301436283 LTS-032 chr10 121679138 121680378 1241 * SEC23IP NA 0 NA 1.511 1 NA NA NA NA NA LTS-032 chr10 121680379 124191669 2511291 * c(MIR3941, MIR4682, TACC2, ATE1, SEC23IP, BTBD16, PLPP4, FGFR2, WDR11-AS1, NSMCE4A, WDR11, PLEKHA1) 0.401021860982445 22 0.0571152097619118 1.51771753691603 1138 0.376621749447028 5 3 2 -6.74437566791908 LTS-032 chr10 124191670 124221109 29440 * c(ARMS2, HTRA1, PLEKHA1) 0 1 NA 1.5155936110557 28 0.224692885639806 5 5 0 -5.76475286955921 LTS-032 chr10 124221110 125806185 1585076 * c(FAM24B-CUZD1, FAM24A, PSTK, CPXM2, DMBT1, FAM24B, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, C10orf120, LOC399815, CUZD1, CHST15, HTRA1, IKZF5, C10orf88, BUB3) 0.325061791396477 18 0.176382679629273 1.51133571247143 1303 0.458744708318698 6 4 2 -6.82997199962235 LTS-032 chr10 125806186 126495531 689346 * c(FAM175B, NKX1-2, METTL10, OAT, CHST15, LHPP, FAM53B) 0.270048936954257 12 0.0398322238973179 2.17931446366433 353 0.855131596267709 8 6 2 -6.77400211772299 LTS-032 chr10 126495532 126505090 9559 * FAM175B NA 0 NA 1.535 1 NA NA NA NA NA LTS-032 chr10 126505091 128821616 2316526 * c(TEX36-AS1, MIR4296, MIR4484, LINC00601, FANK1-AS1, C10orf90, MMP21, CTBP2, DOCK1, FAM175B, EDRF1, LOC283038, TEX36, FLJ37035, ZRANB1, DHX32, BCCIP, UROS, ADAM12, FANK1) 0.313992851861318 37 0.0708009093781201 1.7969831724506 1391 0.54410164306024 6 4 2 -6.82606290560224 LTS-032 chr10 128821617 128860027 38411 * DOCK1 NA 0 NA 1.93918608447121 45 0.385136787978694 7 NA NA -5.76467244096081 LTS-032 chr10 128860028 128904400 44373 * DOCK1 NA 0 NA 0.766 1 NA NA NA NA NA LTS-032 chr10 128904401 128935483 31083 * c(DOCK1, FAM196A) 0.057 1 NA 0.635297696150929 55 0.128352738923739 2 2 0 -5.76451482831774 LTS-032 chr10 128935484 129924069 988586 * c(CLRN3, DOCK1, FOXI2, MKI67, PTPRE, NPS, FAM196A) 0.0588939600363908 16 0.0454275522122863 0.631817011048471 787 0.333383377707722 2 2 0 -6.77020461030242 LTS-032 chr10 131265430 134693137 3427708 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.0564592403336595 47 0.0252344785644192 0.718418529493888 1350 0.26367152137526 2 2 0 -7.25997111437475 LTS-032 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.42 1 NA NA NA NA NA LTS-032 chr10 134694406 134756359 61954 * CFAP46 0.036 1 NA 0.371408244705056 164 0.0810217417243759 1 1 0 -5.7658073582942 LTS-032 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.126 1 NA NA NA NA NA LTS-032 chr10 134884462 135351362 466901 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1) 0.0641678097279771 19 0.0241968051634293 0.679006690989809 1241 0.197909862868934 2 2 0 -6.7913404174797 LTS-032 chr10 135351363 135352509 1147 * CYP2E1 0.157 1 NA 0.747430464560241 9 0.141379905848666 2 2 0 -5.76521456969304 LTS-032 chr10 135352510 135438977 86468 * c(CYP2E1, SPRNP1, FRG2B, SYCE1) 0.368877351228527 11 0.177114344165262 0.70203869549772 136 0.454575850809778 3 2 1 -6.75845820848338 LTS-032 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 0.841510711927548 8 0.578729751265649 3 NA NA -5.7648643713391 LTS-032 chr11 193025 193096 72 * SCGB1C1 0.31 1 NA 0.478 1 NA NA NA NA NA LTS-032 chr11 193097 1013987 820891 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.426216921007923 85 0.105289060564286 0.655929419748196 2927 0.185811986573207 2 1 1 -6.74317215391903 LTS-032 chr11 1013988 1016834 2847 * MUC6 0.21 1 NA 0.634522523438862 23 0.132104955878229 2 2 0 -5.76442162776585 LTS-032 chr11 1016835 1018496 1662 * MUC6 0.304002153545605 37 0.0906218589597527 0.730575354002547 69 0.255033012756992 7 5 2 -6.75449503718636 LTS-032 chr11 1018497 1018564 68 * MUC6 0.488 1 NA 0.655 1 NA NA NA NA NA LTS-032 chr11 1018565 1026146 7582 * MUC6 0.497 1 NA 0.591437470573176 60 0.133747078747337 2 2 0 -5.76608436635151 LTS-032 chr11 1026147 1026278 132 * MUC6 NA 0 NA 0.745 1 NA NA NA NA NA LTS-032 chr11 1026279 1295596 269318 * c(MUC2, MUC6, MUC5B) 0.381595646212526 56 0.0768433302414556 0.770426172787019 895 0.231964306329866 3 2 1 -6.92896628160868 LTS-032 chr11 1295597 1296363 767 * TOLLIP 0.42 1 NA 0.836529160227715 19 0.328280278908843 3 3 0 -5.76444632819147 LTS-032 chr11 1296364 2946481 1650118 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MOB2, SYT8, BRSK2, CD81) 0.443936583339717 82 0.0520330208662126 0.71298206022876 1904 0.228820148754662 2 1 1 -6.96048786223636 LTS-032 chr11 2946482 3847261 900780 * c(OR7E12P, OSBPL5, MRGPRE, ART5, PGAP2, MRGPRG-AS1, MRGPRG, ART1, NAP1L4, NUP98, CHRNA10, TSSC2, SNORA54, TRPC2, PHLDA2, ZNF195, CARS) 0.449640974213673 33 0.043809829220891 0.651336330647661 1067 0.154508170496801 2 1 1 -6.81673566148885 LTS-032 chr11 3847262 4104319 257058 * c(MIR4687, PGAP2, RHOG, STIM1) 0.458 1 NA 0.632899949292617 98 0.117065710165396 2 2 0 -5.7664297882678 LTS-032 chr11 4104320 5549470 1445151 * c(LOC100506082, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR51T1, OR51A4, OR51A2, UBQLN3, TRIM68, MMP26, RRM1, TRIM21, STIM1, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2) 0.448368020949102 118 0.0394408156245378 0.688163089478832 1787 0.244022803416021 2 1 1 -6.88602607097495 LTS-032 chr11 5549471 5566051 16581 * c(HBG2, OR52H1) 0.495 1 NA 0.63839913620936 11 0.0867493777813682 2 2 0 -5.76443992246205 LTS-032 chr11 5566052 5777005 210954 * c(TRIM22, TRIM6, HBG2, OR52B6, OR56B1, OR52H1, OR52N4, TRIM6-TRIM34, TRIM34, TRIM5) 0.46328221831101 27 0.0283820094697057 0.669284921718331 452 0.194187709310415 2 1 1 -7.32890265258726 LTS-032 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.307 1 NA NA NA NA NA LTS-032 chr11 5798827 5809669 10843 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 1.05597058427458 39 0.325417622263903 4 NA NA -5.76532538798332 LTS-032 chr11 5809670 5809675 6 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.761 1 NA NA NA NA NA LTS-032 chr11 5809676 14913687 9104012 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, LYVE1, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NA NA NA NA NA NA NA NA NA LTS-032 NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, USP47, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ZNF143, ZNF214, ZNF215, OR52N1, RIC3, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.4553550495124 267 0.0450183229853123 0.648359105049741 9017 0.169087209832026 2 1 1 -6.89067113979143 LTS-032 NA NA NA NA LTS-032 chr11 14913688 14913725 38 * CYP2R1 NA 0 NA 0.692 1 NA NA NA NA NA LTS-032 chr11 14913726 18034445 3120720 * c(USH1C, OR7E14P, C11orf58, CYP2R1, PLEKHA7, SERGEF, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, MYOD1, NUCB2, PIK3C2A, SOX6, RPS13, ABCC8, CALCA, CALCB) 0.449878875308117 49 0.0996802583843191 0.700805500695682 2269 0.398815000927469 2 1 1 -6.83964854112566 LTS-032 chr11 18034446 18787543 753098 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, IGSF22, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, PTPN5) 0.436300282647168 35 0.0483583090111737 0.635766449289219 1450 0.180041081415766 2 1 1 -6.73586208412513 LTS-032 chr11 18787544 18793453 5910 * PTPN5 NA 0 NA 0.552 1 NA NA NA NA NA LTS-032 chr11 18793454 18994228 200775 * c(MRGPRX1, PTPN5) NA 0 NA 0.350128065951267 40 0.19613129432955 1 NA NA -5.77027382994406 LTS-032 chr11 18994229 32112511 13118283 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, DNAJC24, ARL14EP, MUC15, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, GAS2, ELP4, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, DKFZp686K1684, NELL1, BDNF-AS, PAX6, ZDHHC13, LIN7C, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.437785915360336 93 0.0797651370719007 0.69283254550175 4148 0.183661293048601 2 1 1 -7.87420826880104 LTS-032 chr11 32112512 32112568 57 * RCN1 0.5 1 NA 0.171 1 NA NA NA NA NA LTS-032 chr11 32112569 36680866 4568298 * c(C11orf91, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, LDLRAD3, CSTF3, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, LINC00294, COMMD9, CSTF3-AS1, LMO2, CAPRIN1, CCDC73, APIP, WT1-AS, TRIM44, NAT10, TCP11L1, RAG1, RAG2, RCN1, SLC1A2, TRAF6, WT1, PRRG4, QSER1, PRR5L, PDHX, CAT, DEPDC7, CD44, CD59) 0.434292013959588 93 0.0695447343763451 0.645457914589014 4042 0.185973328104128 2 1 1 -6.73616658406892 LTS-032 chr11 40135659 40137910 2252 * LRRC4C 0.39 1 NA 1.06174413074604 46 0.378779339355654 4 4 0 -5.76453815619497 LTS-032 chr11 42209164 47447583 5238420 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, ALX4, SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, ARFGAP2, ACCS, NA NA NA NA NA NA NA NA NA LTS-032 DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.445374383891628 48 0.0417927807739889 0.658574043331902 4463 0.155815129052879 2 1 1 -6.86815554123434 LTS-032 NA NA NA NA LTS-032 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.532 1 NA NA NA NA NA LTS-032 chr11 47447717 47600438 152722 * c(CELF1, PTPMT1, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.447880243635329 7 0.0384218439853958 0.571667368986101 237 0.121743231124104 2 1 1 -6.89453681462738 LTS-032 chr11 47600439 47640355 39917 * c(C1QTNF4, MTCH2, FAM180B, NDUFS3, KBTBD4) 0.327 1 NA 0.590035817189986 151 0.127315349561613 2 2 0 -5.77470095639924 LTS-032 chr11 47640356 48346419 706064 * c(OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, PTPRJ, AGBL2) 0.40336638843008 15 0.124023154520206 0.622075159275739 809 0.420222370464413 2 1 1 -6.77096266687033 LTS-032 chr11 48346420 48346423 4 * character(0) 0.412 1 NA 1.441 1 NA NA NA NA NA LTS-032 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.338733311956432 104 0.0708553306059612 1.21306253243158 176 0.718684245620145 6 4 2 -6.74028550740379 LTS-032 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.671 1 NA NA NA NA NA LTS-032 chr11 48387986 50246909 1858924 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C) 0.392144727476842 36 0.128127193748157 0.734534879326853 422 0.389846495568521 2 1 1 -6.92734517506483 LTS-032 chr11 50246910 50246956 47 * LOC441601 0.426 1 NA 1.47 1 NA NA NA NA NA LTS-032 chr11 50246957 51516257 1269301 * c(OR4C46, LOC441601, LOC646813, OR4A5) 0.21990764022723 7 0.0368910880966173 1.61891244627284 66 0.268094427664064 5 4 1 -6.83262227143148 LTS-032 chr11 51516258 51527703 11446 * character(0) NA 0 NA 1.42878838578119 6 0.184278050781964 5 NA NA -5.76456507128736 LTS-032 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.174 1 NA 1.14085698097441 21 1.34723851955451 4 4 0 -5.76446032290285 LTS-032 chr11 55111585 56468198 1356614 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.307017996609822 59 0.109242113103316 1.02382439420107 1044 0.425158362479023 3 2 1 -6.87436772655634 LTS-032 chr11 56468199 56508619 40421 * c(OR8U8, OR9G9) 0.345848413957045 22 0.106301590479767 1.72150323842422 36 0.914175473760589 6 4 2 -6.73405921626596 LTS-032 chr11 56508620 56523470 14851 * OR9G4 0 1 NA 1.00726612656374 27 1.87519401237461 3 3 0 -5.7644323384963 LTS-032 chr11 56523471 57472761 949291 * c(PRG3, CLP1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SLC43A3, RTN4RL2, OR5AK2, MIR130A, P2RX3, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.261217775098552 13 0.0515790406647646 1.23415549249738 1281 0.289667085868819 4 3 1 -6.75386333884421 LTS-032 chr11 57472762 57479381 6620 * MED19 NA 0 NA 2.292 1 NA NA NA NA NA LTS-032 chr11 57479382 59940648 2461267 * c(MIR3162, TMX2-CTNND1, GLYAT, CNTF, CTNND1, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A2, DTX4, GIF, SELENOH, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, TMX2, MRPL16, FAM111A, MS4A6A, BTBD18, STX3, TCN1, ZFP91, OR10W1, OR10V2P, GLYATL1, MS4A3, LPXN) 0.221793075746048 15 0.0421200099488977 1.51869834073431 2336 0.337002108358109 5 4 1 -6.75138206016287 LTS-032 chr11 59940649 59942822 2174 * MS4A6A NA 0 NA 2.047 1 NA NA NA NA NA LTS-032 chr11 59942823 60783285 840463 * c(PTGDR2, MS4A15, ZP1, MS4A6E, PRPF19, LINC00301, MS4A10, MS4A13, SLC15A3, MS4A4A, MS4A12, TMEM132A, MS4A7, MS4A6A, MS4A5, TMEM109, CCDC86, MS4A8, MS4A14, CD6, MS4A1) 0.14790647532723 23 0.0862165900233645 2.0618503201078 1218 0.585950130562391 7 6 1 -6.7431518368744 LTS-032 chr11 60783286 60784983 1698 * CD6 NA 0 NA 1.046 1 NA NA NA NA NA LTS-032 chr11 60784984 60892606 107623 * c(CD5, CD6) 0.218715093732429 4 0.198354900788124 0.694860670588957 99 0.154549898744108 2 2 0 -7.06970713023482 LTS-032 chr11 60892607 60893322 716 * CD5 0.426 1 NA 0.633739666409205 8 0.0724726549416103 2 2 0 -5.76442203879543 LTS-032 chr11 60893323 62010918 1117596 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, FTH1, TKFC, DKFZP434K028, INCENP, LRRC10B, FADS1, FADS3, SCGB2A1, TMEM216, TMEM138, PGA5, SDHAF2, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, CPSF7, SYT7, CD5, FADS2) 0.461011999311207 42 0.0302100659321309 0.666388268328411 2447 0.155105858776015 2 1 1 -7.22754683472762 LTS-032 chr11 62010919 62012034 1116 * SCGB1D2 NA 0 NA 0.53 1 NA NA NA NA NA LTS-032 chr11 62012035 64129241 2117207 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, SCGB1D2, STIP1, PLA2G16, CHRM1, SLC22A9, HRASLS5, COX8A, C11orf84, EEF1G, MARK2, ESRRA, LRRN4CL, HNRNPUL2, FKBP2, GANAB, SNHG1, FLRT1, EML3, PRDX5, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, DNAJC4, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A2, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, OTUB1, GPR137, BAD, NA NA NA NA NA NA NA NA NA LTS-032 RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, VEGFB, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, INTS5, FERMT3, TRPT1, NUDT22, LGALS12, RPS6KA4, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.442081941913681 81 0.0580742580188886 0.625438056167979 5013 0.145157360300466 2 1 1 -6.78371980562372 LTS-032 NA NA NA NA LTS-032 chr11 64129242 64129340 99 * RPS6KA4 NA 0 NA 0.712 1 NA NA NA NA NA LTS-032 chr11 64129341 65233774 1104434 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, CDC42EP2, EHD1, CDCA5, BATF2, SLC22A12, GPHA2, FAU, TIGD3, ATG2A, POLA2, MAJIN, SLC25A45, NEAT1, SAC3D1, SPDYC, ARL2, MIR192, MIR194-2, MEN1, SLC22A20, PPP2R5B, CDC42BPG, SLC22A11, PYGM, MAP4K2, DPF2, TM7SF2, VPS51, MRPL49, ZNHIT2, SF1, ZFPL1, CAPN1, FRMD8, SYVN1, RPS6KA4, NRXN2) 0.452956480796167 50 0.0433271183402897 0.658222816650703 3235 0.176625350626561 2 1 1 -6.86340137035049 LTS-032 chr11 65233775 65265224 31450 * character(0) NA 0 NA 0.586 1 NA NA NA NA NA LTS-032 chr11 65265225 68514808 3249584 * c(LOC100130987, RBM14-RBM4, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, CDK2AP2, TCIRG1, RBM14, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CHKA, CATSPER1, CST6, CTSW, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, FAM89B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, BRMS1, NPAS4, GSTP1, RHOD, EFEMP2, SLC29A2, ANKRD13D, TBX10, TBC1D10C, MALAT1, GPR152, DOC2GP, NA NA NA NA NA NA NA NA NA LTS-032 PCNX3, LRP5, LTBP3, MAP3K11, NDUFV1, NDUFS8, OVOL1, PC, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, CCDC87, PPP6R3, PACS1, CABP4, CD248, CORO1B, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, RAD9A, RBM4, RELA, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SPTBN2, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, UNC93B1, RAB1B, C11orf68, RBM4B, RNASEH2C, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, AIP, SART1, AP5B1, FIBP, SYT12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ACY3, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.425363906756807 176 0.061525838464025 0.580401128897517 7708 0.135799652819363 2 1 1 -7.64957466073078 LTS-032 NA NA NA NA LTS-032 chr11 68514809 68517650 2842 * TESMIN NA 0 NA 0.697 1 NA NA NA NA NA LTS-032 chr11 68517651 72552601 4034951 * c(LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4692, IL18BP, SHANK2-AS1, STARD10, MRGPRD, MRGPRF, ARAP1, CPT1A, DHCR7, CTTN, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, MYEOV, ALG1L9P, IGHMBP2, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, PDE2A, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, NA NA NA NA NA NA NA NA NA LTS-032 CCND1, CLPB, PPFIA1, FADD, ATG16L2, TESMIN, FCHSD2, FGF19) 0.440808188634053 82 0.0865834184291858 0.684112287868468 3849 0.183459057140293 2 1 1 -7.02156925560481 LTS-032 NA NA NA NA LTS-032 chr11 72552602 83197334 10644733 * c(KCNE3, MIR708, KCTD21-AS1, SNORA70E, MIR4300, RAB30-AS1, TPBGL, NDUFC2-KCTD14, MIR4696, MIR5579, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, DLG2, B3GNT6, GDPD4, DDIAS, FAM181B, FAM168A, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, ANKRD42, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, P2RY2, P2RY6, PAK1, NA NA NA NA NA NA NA NA NA LTS-032 COA4, PPME1, PCF11, MRPL48, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, PLEKHB1, RAB6A, CCDC90B, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, RELT, SERPINH1, ATG16L2, INTS4, SPCS2, ARHGEF17, GAB2, FCHSD2) 0.448857918463834 157 0.0515543702792317 0.644125100672863 7685 0.172589205841895 2 1 1 -6.78819843338801 LTS-032 NA NA NA NA LTS-032 chr11 83197335 83770584 573250 * DLG2 NA 0 NA 0.399916220917081 85 0.135229769193734 1 NA NA -5.91193243273715 LTS-032 chr11 83770585 83809940 39356 * DLG2 NA 0 NA 0.901 1 NA NA NA NA NA LTS-032 chr11 83809941 84822798 1012858 * DLG2 0.479 1 NA 0.680740638961161 71 0.134354962452504 2 2 0 -5.88117674535345 LTS-032 chr11 84822799 84997261 174463 * DLG2 NA 0 NA 0.646578563408161 29 0.102755281047989 2 NA NA -5.76504202485136 LTS-032 chr11 84997262 85309653 312392 * DLG2 NA 0 NA 1.407 1 NA NA NA NA NA LTS-032 chr11 85309654 85347008 37355 * c(DLG2, TMEM126B) 0.147 1 NA 1.98859560092235 35 0.392381744750499 7 7 0 -5.76444707118264 LTS-032 chr11 85347009 86521896 1174888 * c(ME3, PRSS23, CCDC83, CCDC89, HIKESHI, SYTL2, TMEM126B, CREBZF, CCDC81, PICALM, TMEM126A, EED) 0.127858438545266 25 0.0279557388264616 2.10653830177283 1083 0.508265944303346 9 8 1 -6.8474118462597 LTS-032 chr11 86521897 86666441 144545 * c(PRSS23, FZD4, OR7E2P) NA 0 NA 2.00174867361966 179 0.454601606272553 7 NA NA -5.7644467173803 LTS-032 chr11 86666442 86748831 82390 * LOC100506368 NA 0 NA 0.656 1 NA NA NA NA NA LTS-032 chr11 86748832 86748835 4 * character(0) 0.497 1 NA 0.33 1 NA NA NA NA NA LTS-032 chr11 86748836 105010578 18261743 * c(NAALAD2, WTAPP1, MIR1304, MIR1260B, MIR3920, CASP12, MIR4490, MIR4693, GRM5-AS1, JRKL-AS1, LOC101054525, YAP1, CTSC, GPR83, CARD16, TMEM123, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, FOLH1B, ENDOD1, RAB38, PANX1, FUT4, ANGPTL5, CHORDC1, C11orf54, GRM5, BIRC2, BIRC3, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, NA NA NA NA NA NA NA NA NA LTS-032 MTNR1B, NOX4, CWC15, PGR, CNTN5, ANKRD49, KDM4D, SMCO4, TRIM49, CEP126, CARD18, SCARNA9, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, LOC643733, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, DYNC2H1, CCDC82, PDGFD, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MAML2, C11orf70, CEP295, JRKL, MTMR2, MMP20, MED17, CEP57) 0.432985364233793 193 0.0967667865993996 0.648699274408163 7846 0.200173731716591 2 1 1 -6.76752506457881 LTS-032 NA NA NA NA LTS-032 chr11 105010579 105481416 470838 * GRIA4 NA 0 NA 1.293 1 NA NA NA NA NA LTS-032 chr11 105481417 106579428 1098012 * c(KBTBD3, GRIA4, GUCY1A2, AASDHPPT, MSANTD4) 0.401202339817158 6 0.06518716642612 0.951110091795606 513 0.262030375010454 3 2 1 -7.10733723092135 LTS-032 chr11 106579429 106617258 37830 * GUCY1A2 NA 0 NA 0.657 1 NA NA NA NA NA LTS-032 chr11 106617259 119534698 12917440 * c(LOC100131626, LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, EXPH5, PHLDB1, SIK2, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, NA NA NA NA NA NA NA NA NA LTS-032 TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, GUCY1A2, H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, MCAM, KMT2A, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 USP28, PTS, NECTIN1, RDX, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, LOC643923, CLDN25, C11orf1, RPL23AP64, SLN, TAGLN, THY1, UPK2, ZBTB16, RNF26, NLRX1, ALG9, PDZD3, CUL5, TMPRSS5, MFRP, BCO2, TMPRSS13, BUD13, TMEM25, DIXDC1, ZC3H12C, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, UBE4A, C2CD2L) 0.44205307260676 209 0.0818539506680683 0.640578627037236 12608 0.215020758791589 2 1 1 -6.73957111130277 LTS-032 NA NA NA NA LTS-032 chr11 119534699 123848516 4313818 * c(MIR4493, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, GRIK4, HSPA8, TMEM225, OR8D4, LOC341056, BSX, OR6X1, OR6M1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, NECTIN1, SC5D, LOC649133, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.449943017725107 82 0.0384364936872994 0.661742815883953 3044 0.231933694455901 2 1 1 -6.88468011521775 LTS-032 chr11 123848517 123886307 37791 * OR10G4 0.036 1 NA 0.840174754492651 7 0.573644738243354 3 3 0 -5.76494095500047 LTS-032 chr11 123886308 124440297 553990 * c(OR8B12, OR10G8, OR10G9, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A) 0.389942430914446 12 0.146127901635395 0.671631353588716 498 0.282242535683614 2 1 1 -6.79517144131631 LTS-032 chr11 124440298 124493199 52902 * c(PANX3, OR8A1, TBRG1) 0.429 1 NA 0.649056663540741 71 0.142620204516816 2 2 0 -5.76462774924067 LTS-032 chr11 124493200 134856661 10363462 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, ACAD8, B3GAT1, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, ZBTB44, THYN1, DDX25, APLP2, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, SNX19, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, NA NA NA NA NA NA NA NA NA LTS-032 SIAE, ROBO4, FOXRED1, ACRV1, PRDM10, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, FAM118B, MSANTD2, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.445133713238228 200 0.0530449235987572 0.672857193442995 6884 0.192221466655958 2 1 1 -7.12288529252415 LTS-032 NA NA NA NA LTS-032 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.685 1 NA NA NA NA NA LTS-032 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.435 1 NA 1.09252059732074 5 0.248273437967093 4 4 0 -5.77083331789256 LTS-032 chr12 176140 1863685 1687546 * c(LINC00942, MIR3649, FBXL14, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, ADIPOR2, WNT5B, CCDC77) 0.436604878235074 42 0.0552607219167428 1.22352894741964 1769 0.275342199285863 4 2 2 -6.74316080142048 LTS-032 chr12 1863686 1881926 18241 * ADIPOR2 NA 0 NA 1.445 1 NA NA NA NA NA LTS-032 chr12 1881927 6080875 4198949 * c(LINC00940, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, DCP1B, FGF6, FKBP4, FOXM1, GALNT8, LOC283440, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LRTM2, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, RHNO1, NRIP2, CRACR2A, DYRK4, CCND2, CACNA2D4) 0.454934756188349 97 0.0306522767579626 1.30855405121934 3409 0.340739795746036 4 2 2 -7.18770619534611 LTS-032 chr12 6080876 6471434 390559 * c(PLEKHG6, SCNN1A, TNFRSF1A, VWF, CD9) 0.431409108333986 7 0.0509603020100193 1.6280194671844 576 0.360538066489913 6 3 3 -6.74286871006612 LTS-032 chr12 6471435 6472604 1170 * SCNN1A NA 0 NA 1.289 1 NA NA NA NA NA LTS-032 chr12 6472605 7654076 1181472 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD163, CD27, CLSTN3, NCAPD2) 0.447809036730239 71 0.0668433557298808 1.24872109398971 3566 0.298392434968979 4 2 2 -6.77614171047155 LTS-032 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.991 1 NA NA NA NA NA LTS-032 chr12 7655021 10573094 2918074 * c(KLRF2, LINC00987, KLRC4-KLRK1, KLRG1, TMEM52B, SLC2A14, A2ML1, A2M-AS1, CLEC12A, CLECL1, CLEC4C, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, NECAP1, CLEC4E, CLEC9A, CLEC2D, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, OLR1, CLEC4A, CLEC1B, CLEC1A, KLRF1, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, CLEC7A, NA NA NA NA NA NA NA NA NA LTS-032 SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, KLRC4, CD163, CLEC6A, GDF3, CD69, CLEC2B) 0.426400530512559 109 0.085162661413806 1.16940611976314 3433 0.366041895252439 4 2 2 -6.74267626569426 LTS-032 NA NA NA NA LTS-032 chr12 10573095 10588530 15436 * c(KLRC2, KLRC3) 0.478 1 NA 1.94455909151107 59 0.735978270872036 7 7 0 -5.76443524403234 LTS-032 chr12 10588531 10588541 11 * c(KLRC2, KLRC3) NA 0 NA 1.305 1 NA NA NA NA NA LTS-032 chr12 10588542 11150319 561778 * c(PRH1-PRR4, KLRA1P, PRR4, TAS2R20, TAS2R50, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, MAGOHB, STYK1, PRB4, PRH1, PRH2, YBX3) 0.441416574839515 24 0.0617089357680327 1.17254453928022 657 0.379369992161958 4 2 2 -6.74310117159751 LTS-032 chr12 11150320 11174202 23883 * c(PRH1-PRR4, TAS2R20, PRB4) 0.293 1 NA 1.33683872417937 7 0.448706978306503 5 5 0 -5.76504159829949 LTS-032 chr12 11174203 11214145 39943 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.30107330632952 30 0.0665639093126937 1.41546017338133 82 0.485968207411632 7 5 2 -6.75051774371064 LTS-032 chr12 11214146 11214351 206 * c(PRH1-PRR4, TAS2R46, PRB4) 0.179 1 NA 1.56383898596101 3 0.912251244632384 5 5 0 -5.76441071452133 LTS-032 chr12 11214352 11286820 72469 * c(PRH1-PRR4, TAS2R43, TAS2R46, TAS2R30, PRB4) 0.224546523237296 29 0.0965432341446738 1.48892545257352 87 0.655367962291716 5 4 1 -6.73549200837702 LTS-032 chr12 11286821 11287271 451 * c(PRH1-PRR4, TAS2R30, PRB4) 0.421 1 NA 1.13634529980828 9 0.132899816068763 4 4 0 -5.76444641168559 LTS-032 chr12 11287272 16342414 5055143 * c(SMIM10L1, LOC100506314, PRH1-PRR4, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, LINC01252, TAS2R42, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, MANSC1, PRB1, PRB3, PRB4, GPRC5D, ATF7IP, H2AFJ, FAM234B, PTPRO, PRB2, MIR613, MIR614, SLC15A5, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, NA NA NA NA NA NA NA NA NA LTS-032 HTR7P1) 0.448959643915732 72 0.0536299264784552 1.21240915531323 3273 0.292238510519677 4 2 2 -6.79037933930423 LTS-032 NA NA NA NA LTS-032 chr12 16342415 16342522 108 * SLC15A5 NA 0 NA 1.32 1 NA NA NA NA NA LTS-032 chr12 16342523 24104091 7761569 * c(LOC100506393, ABCC9, MIR3974, SLCO1B1, AEBP2, SLCO1B3, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, MGST1, GOLT1B, PDE3A, PIK3C2G, SLCO1C1, PLEKHA5, ETNK1, LMO3, CMAS, RECQL, ST8SIA1, SLCO1A2, SOX5, SKP1P2, SLC15A5, RERGL, PYROXD1, SPX, PLCZ1, CAPZA3, C2CD5) 0.451064140962239 63 0.0877261921698801 1.29262622886138 2960 0.350207977631833 4 2 2 -6.99092516075094 LTS-032 chr12 24104092 24365315 261224 * SOX5 NA 0 NA 1.09 1 NA NA NA NA NA LTS-032 chr12 24365316 26276715 1911400 * c(MIR920, MIR4302, RASSF8-AS1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, KRAS, LRMP, CASC1, BCAT1, SOX5, BHLHE41) 0.440107731292644 47 0.0760802864791485 1.16713925523938 946 0.335697983990613 4 2 2 -6.74219287340088 LTS-032 chr12 26276716 26276960 245 * BHLHE41 NA 0 NA 1.454 1 NA NA NA NA NA LTS-032 chr12 26276961 31535335 5258375 * c(MANSC4, LINC00941, DDX11-AS1, OVCH1-AS1, IPO8, DENND5B, DDX11, STK38L, FGFR1OP2, SMCO2, OVCH1, ITPR2, REP15, TSPAN11, ERGIC2, TM7SF3, CCDC91, FAR2, ASUN, ARNTL2, PTHLH, KLHL42, FAM60A, MRPS35, CAPRIN2, C12orf71, BHLHE41, FLJ13224, SSPN, TMTC1, PPFIBP1, MED21) 0.436127889816952 65 0.0996096274695141 1.27065279266666 3255 0.346518570070967 4 2 2 -6.83589785460281 LTS-032 chr12 31535336 32261771 726436 * c(RNU6-78P, DENND5B-AS1, DENND5B, AMN1, ETFBKMT, H3F3C, KIAA1551, BICD1) 0.336055362059102 8 0.0631183695244781 0.858636364072706 605 0.19199035845476 3 2 1 -6.80937990663439 LTS-032 chr12 32261772 32369238 107467 * BICD1 NA 0 NA 1.226 1 NA NA NA NA NA LTS-032 chr12 32369239 34175508 1806270 * c(DNM1L, FGD4, SYT10, YARS2, PKP2, BICD1, ALG10) 0.468617062742652 31 0.0212016939879102 1.27324301138678 770 0.393268789350081 4 2 2 -8.06261290734641 LTS-032 chr12 34175509 34182671 7163 * ALG10 NA 0 NA 1.31563252131443 55 0.348484552744714 4 NA NA -5.76474846762908 LTS-032 chr12 38710341 38710459 119 * character(0) 0.368 1 NA 0.655333268662681 5 0.372627159503974 2 2 0 -5.76441036889049 LTS-032 chr12 38710460 40964609 2254150 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.398733089451723 56 0.0669060981826468 1.41723218908089 1810 0.387538336218623 5 3 2 -6.74512775415125 LTS-032 chr12 40964610 41302100 337491 * CNTN1 NA 0 NA 0.841 1 NA NA NA NA NA LTS-032 chr12 41302101 41464003 161903 * CNTN1 0.336221380504783 5 0.0357379350270829 0.923020078393528 143 0.212184593186542 3 2 1 -6.80912757690311 LTS-032 chr12 41464004 41465771 1768 * CNTN1 NA 0 NA 0.822675568279672 39 0.233127359445427 3 NA NA -5.76464114301612 LTS-032 chr12 41465772 41582206 116435 * CNTN1 NA 0 NA 2.142 1 NA NA NA NA NA LTS-032 chr12 41582207 41966306 384100 * PDZRN4 0.194 1 NA 2.6633938768691 73 0.530606880939605 9 9 0 -5.76540438490297 LTS-032 chr12 41966307 42768691 802385 * c(YAF2, GXYLT1, PDZRN4, PPHLN1, ZCRB1) 0.154290883200847 11 0.0438279694840054 3.01132398525624 361 0.8782554853445 13 11 2 -6.7779301037871 LTS-032 chr12 42768692 44123561 1354870 * c(PRICKLE1, PPHLN1, ADAMTS20, PUS7L) 0.180610226393864 9 0.0630312973406422 2.51087643445339 457 0.707704361394488 11 9 2 -6.82576851377115 LTS-032 chr12 44123562 44149141 25580 * PUS7L NA 0 NA 2.48714709652391 69 0.367782002037916 9 NA NA -5.76453830585225 LTS-032 chr12 44149142 44161863 12722 * c(IRAK4, PUS7L) NA 0 NA 1.565 1 NA NA NA NA NA LTS-032 chr12 44161864 44926334 764471 * c(NELL2, IRAK4, TWF1, TMEM117) 0.332 1 NA 1.60045029616956 291 0.432106550658713 5 5 0 -5.78243096226755 LTS-032 chr12 44926335 52156480 7230146 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, TUBA1B, RAPGEF3, MCRS1, ADCY6, GALNT6, LARP4, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, COL2A1, ASB8, BCDIN3D, ANO6, ARID2, CELA1, FAIM2, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, RND1, GPD1, LOC283332, TMPRSS12, RACGAP1, SENP1, C1QL4, H1FNT, OR8S1, AMIGO2, AQP2, AQP5, AQP6, ARF3, CCDC184, LALBA, LINC00938, ASIC1, NA NA NA NA NA NA NA NA NA LTS-032 DBX2, ATF1, NELL2, SLC11A2, DHH, PLEKHA8P1, FKBP11, BIN2, LIMA1, HDAC7, PFKM, SLC38A2, POU6F1, KANSL2, SLC38A4, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SNORA2A, SNORA2B, SNORA2C, TMBIM6, TFCP2, VDR, WNT1, WNT10B, CACNB3, TUBA1A, TMEM106C, RPAP3, DNAJC22, KMT2D, SLC38A1, CSRNP2, RACGAP1P, FAM186B, TUBA1C, COX14, CCDC65, ENDOU, CCNT1, FMNL3, CERS5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PCED1B, SCAF11, DDX23, SLC4A8, DAZAP2) 0.305588761037952 183 0.0569704818424165 1.64583641500692 9719 0.693192000305905 6 4 2 -6.99246145561553 LTS-032 NA NA NA NA LTS-032 chr12 52156481 52159420 2940 * SCN8A NA 0 NA 2.182 1 NA NA NA NA NA LTS-032 chr12 52159421 53497425 1338005 * c(KRT71, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, LOC283335, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, ANKRD33, IGFBP6, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, ATG101, SCN8A, SOAT2, SPRYD3, ACVR1B, KRT75, ACVRL1) 0.297178182372357 73 0.0664282781196544 1.76942639667888 2849 0.473649483601011 7 5 2 -6.79592325292016 LTS-032 chr12 53497426 58351087 4853662 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, LOC100506844, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, NA NA NA NA NA NA NA NA NA LTS-032 OR6C74, OR6C3, B4GALNT1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, ITGB7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MIR26A2, MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MYL6, MYO1A, NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, CSAD, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, PIP4K2C, AAAS, INHBE, PYM1, SARNP, SOAT2, ZC3H10, MFSD5, DNAJC14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RDH16, NPFF, HSD17B6, TIMELESS, LACRT, ATP23, MARCH9, COQ10A, CD63, ESPL1, TESPA1, ZBTB39, PAN2) 0.298327006682918 156 0.0878944557967196 1.64084010595076 11948 0.415573114358083 6 4 2 -6.93698948695393 LTS-032 NA NA NA NA LTS-032 chr12 59197020 60176407 979388 * c(LRIG3, SLC16A7) 0.313300212677123 7 0.0566803904950086 1.89813852662464 308 0.367764917121534 7 5 2 -6.81049082925421 LTS-032 chr12 62102011 62148858 46848 * FAM19A2 0.366251104912566 3 0.019157244060668 0.79033342363797 64 0.149938988087854 3 2 1 -7.21042510277221 LTS-032 chr12 62148859 62261018 112160 * FAM19A2 NA 0 NA 1.577 1 NA NA NA NA NA LTS-032 chr12 62261019 63952964 1691946 * c(MON2, LINC01465, DPY19L2, FAM19A2, MIRLET7I, AVPR1A, PPM1H, USP15) 0.195874146432063 9 0.0307042342356881 2.68074894238987 727 0.693069714015612 11 9 2 -6.79708978904231 LTS-032 chr12 63952965 64238464 285500 * c(TMEM5, DPY19L2) 0.307602701372177 10 0.0502168630375627 0.913516899412572 163 0.379049073979529 3 2 1 -7.11576512592603 LTS-032 chr12 64238465 64238512 48 * character(0) NA 0 NA 1.103 1 NA NA NA NA NA LTS-032 chr12 64238513 64803502 564990 * c(XPOT, C12orf56, C12orf66, SRGAP1) 0 1 NA 1.15025056294573 409 0.268434581487871 4 4 0 -5.77068904636473 LTS-032 chr12 64803503 64803798 296 * XPOT 0.478 1 NA 0.99765383414648 5 0.174722065006112 3 3 0 -5.76445106569315 LTS-032 chr12 64803799 65222347 418549 * c(MIR548Z, XPOT, TBC1D30, GNS, RASSF3, TBK1, MIR548C) 0.446762420413503 11 0.0203706562575592 1.10408861245179 543 0.480307624366779 4 2 2 -6.97663208425036 LTS-032 chr12 65222348 65271432 49085 * TBC1D30 0 1 NA 1.14816541097386 91 0.547052530887731 4 4 0 -5.76455498767205 LTS-032 chr12 65271433 65274824 3392 * TBC1D30 0.438 1 NA 1.16033316586016 66 0.177482354091853 4 4 0 -5.76446014118174 LTS-032 chr12 65274825 65444404 169580 * c(WIF1, FLJ41278) NA 0 NA 2.422 1 NA NA NA NA NA LTS-032 chr12 65444405 66563876 1119472 * c(WIF1, RPSAP52, LEMD3, MSRB3, TMBIM4, HMGA2, LLPH) 0.206560112865444 12 0.0701614480172608 2.29015251040732 860 1.04374528024221 10 8 2 -6.76324250207264 LTS-032 chr12 66563877 66582630 18754 * character(0) NA 0 NA 0.902 1 NA NA NA NA NA LTS-032 chr12 66582631 66647603 64973 * IRAK3 0.083 1 NA 1.35778971685937 199 0.267133896489898 5 5 0 -5.76778737573092 LTS-032 chr12 66647604 66648328 725 * IRAK3 0.395 1 NA 1.49429782892251 17 0.475837404261285 5 5 0 -5.76441069888619 LTS-032 chr12 66648329 66923718 275390 * c(IRAK3, GRIP1, HELB) 0.394127995558609 2 0.0183847763108503 1.41197309702326 247 0.470078472229533 5 3 2 -6.81240353087137 LTS-032 chr12 66923719 66932871 9153 * GRIP1 NA 0 NA 1.056 1 NA NA NA NA NA LTS-032 chr12 66932872 70794168 3861297 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, RAB3IP, CPM, BEST3, GRIP1, KCNMB4, IFNG, LRRC10, LYZ, MDM2, CNOT2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, DYRK2) 0.448206481761643 54 0.0423782837996742 1.07365008529084 2424 0.394199978941105 4 2 2 -6.96393705818507 LTS-032 chr12 70794169 70816444 22276 * KCNMB4 NA 0 NA 0.763 1 NA NA NA NA NA LTS-032 chr12 70816445 70915438 98994 * c(KCNMB4, PTPRB) 0.353508527549581 5 0.0406853782088848 0.865126932053865 170 0.190879636075072 3 2 1 -6.74589015324081 LTS-032 chr12 70915439 70918220 2782 * PTPRB NA 0 NA 1.317 1 NA NA NA NA NA LTS-032 chr12 70918221 72426036 1507816 * c(TPH2, ZFC3H1, RAB21, TMEM19, PTPRB, PTPRR, TBC1D15, TSPAN8, MRS2P2, THAP2, LGR5) 0.446227993182637 21 0.0330210611003111 1.14350371252129 1369 0.290620810411203 4 2 2 -6.83739216207393 LTS-032 chr12 72426037 73059390 633354 * c(TPH2, TRHDE-AS1, TRHDE) NA 0 NA 1.43057108361814 155 0.305564753257276 5 NA NA -5.76725259407231 LTS-032 chr12 74931559 77427765 2496207 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, ATXN7L3B, BBS10, CAPS2) 0.435288691393205 21 0.0967567150370552 1.07174773678942 1569 0.397881797383098 4 2 2 -6.84006919645672 LTS-032 chr12 77427766 79685598 2257833 * c(E2F7, SYT1, NAV3) 0.453770823432735 5 0.0487257632059263 1.22114656070848 399 0.336900109090581 4 2 2 -6.83958794568016 LTS-032 chr12 79685599 85254329 5568731 * c(MIR1252, MIR4699, TMTC2, OTOGL, CCDC59, PTPRQ, MYF5, MYF6, PPP1R12A, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, METTL25, PPFIA2, LIN7A) 0.391837390246819 31 0.0527512523420621 1.41764312641883 1885 0.36764380943079 5 3 2 -6.78134771915608 LTS-032 chr12 85254330 85432040 177711 * c(TSPAN19, SLC6A15, LRRIQ1) 0.391861770367615 2 0.0183847763108503 1.58571607526108 202 0.349490696208946 5 3 2 -6.87697985944045 LTS-032 chr12 85432041 86377469 945429 * c(MGAT4C, NTS, ALX1, LRRIQ1, RASSF9) NA 0 NA 1.589936051869 311 0.379935542467181 5 NA NA -5.78895074710423 LTS-032 chr12 86377470 86383154 5685 * MGAT4C NA 0 NA 0.907 1 NA NA NA NA NA LTS-032 chr12 86383155 88177791 1794637 * c(MIR548AL, MGAT4C, MKRN9P) 0.362 1 NA 0.971005470260698 15 0.154517621124891 3 3 0 -5.90721251303914 LTS-032 chr12 88177792 88900985 723194 * c(TMTC3, C12orf50, MKRN9P, KITLG, CEP290, C12orf29) 0.338869996894871 10 0.0631070519038879 0.990274817046813 662 0.296825133925662 3 2 1 -6.77727657084147 LTS-032 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.847 1 NA NA NA NA NA LTS-032 chr12 88909243 100497792 11588550 * c(TMPO-AS1, PGAM1P5, MIR1251, MIR4303, MIR3685, POC1B-GALNT4, MIR5700, PLXNC1, METAP2, KERA, NUDT4, CCDC38, NEDD1, SLC9A7P1, IKBIP, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, LINC01619, POC1B, MRPL42, HAL, APAF1, LINC00936, C12orf74, LTA4H, LUM, MIR135A2, KITLG, LINC00615, PLEKHG7, MIR331, ATP2B1, CEP83, CDK17, SLC25A3, VEZT, FGD6, NDUFA12, ANKS1B, NA NA NA NA NA NA NA NA NA LTS-032 CLLU1OS, CLLU1, TMCC3, NTN4, LOC643339, LOC643711, LOC643770, SNRPF, SNORA53, BTG1, TMPO, NR2C1, LOC728084, UBE2N, USP44, EEA1, GALNT4, CRADD, SOCS2) 0.334765894612629 90 0.0654038104927098 0.884795952088998 5457 0.241608228526032 3 2 1 -6.91216289427402 LTS-032 NA NA NA NA LTS-032 chr12 100497793 100502106 4314 * UHRF1BP1L NA 0 NA 1.272 1 NA NA NA NA NA LTS-032 chr12 100502107 104200794 3698688 * c(MIR1827, DEPDC4, SPIC, ANO4, SLC5A8, UHRF1BP1L, SLC17A8, UTP20, GAS2L3, LINC00485, IGF1, C12orf42, ARL1, ASCL1, MYBPC1, SYCP3, PAH, CCDC53, NT5DC3, PMCH, PARPBP, DRAM1, STAB2, GOLGA2P5, SCYL2, CHPT1, ACTR6, NUP37, GNPTAB, NR1H4) 0.338662033252796 50 0.0457666708781107 0.937250836895695 3107 0.606697928255716 3 2 1 -6.76642478355116 LTS-032 chr12 104200795 104208685 7891 * NT5DC3 NA 0 NA 0.817 1 NA NA NA NA NA LTS-032 chr12 104208686 105630091 1421406 * c(MIR3652, MIR3922, C12orf45, ALDH1L2, KIAA1033, TTC41P, HCFC2, NFYB, EID3, CHST11, NT5DC3, APPL2, TDG, HSP90B1, C12orf73, TXNRD1, GLT8D2, SLC41A2) 0.368181172843166 30 0.0582406916246669 0.86798009821757 1662 0.224297691729153 3 2 1 -6.84850696972787 LTS-032 chr12 105630092 105724299 94208 * character(0) NA 0 NA 1.129 1 NA NA NA NA NA LTS-032 chr12 105724300 107367225 1642926 * c(LOC100287944, LOC100505978, CKAP4, TCP11L2, C12orf75, RIC8B, POLR3B, RFX4, TMEM263, NUAK1) 0.378798494548073 15 0.180840050347051 1.20387232969183 939 0.472508321981289 4 2 2 -6.78818661882181 LTS-032 chr12 107367226 107712880 345655 * c(BTBD11, CRY1, MTERF2, TMEM263) 0.461 1 NA 1.09869156336381 127 0.348296212968938 4 4 0 -5.7759988751956 LTS-032 chr12 107712881 110006512 2293632 * c(USP30-AS1, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, DAO, ISCU, CORO1C, MYO1H, ACACB, MMAB, TMEM119, SSH1, SVOP, SELPLG, LOC728739, UNG, KCTD10, USP30, UBE3B, WSCD2, SART3) 0.453146500878983 104 0.0595919877478015 1.20370520766405 3058 0.486030225168411 4 2 2 -6.79670723798405 LTS-032 chr12 110006513 110009538 3026 * MMAB 0.377 1 NA 1.27038543161866 10 0.333516299784916 4 4 0 -5.76447446224691 LTS-032 chr12 110009539 110719151 709613 * c(MIR4497, IFT81, MMAB, C12orf76, MVK, ATP2A2, GLTP, TRPV4, TCHP, FAM222A, FAM222A-AS1, ANKRD13A, GIT2) 0.331661437348414 12 0.209246628443929 1.19636070612361 1018 0.339258420421895 4 3 1 -6.78666317542409 LTS-032 chr12 110719152 110719594 443 * ATP2A2 NA 0 NA 0.885 1 NA NA NA NA NA LTS-032 chr12 110719595 113269641 2550047 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, FAM216A, MYL2, ATP2A2, GPN3, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, HVCN1, MAPKAPK5, ADAM1A, TMEM116) 0.312693181733491 19 0.139548583000845 0.879132776851418 3231 0.237510776500791 3 2 1 -6.82190094887727 LTS-032 chr12 113269642 120648528 7378887 * c(LINC00173, MIR1178, PXN-AS1, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, PXN, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19 NA NA NA NA NA NA NA NA NA LTS-032 ) 0.318576716698276 73 0.0745731817534567 0.944997562817383 5213 0.242257464293297 3 2 1 -6.89765178256512 LTS-032 NA NA NA NA LTS-032 chr12 120648529 123031330 2382802 * c(PXN-AS1, NRAV, CLIP1-AS1, MIR4700, CAMKK2, SPPL3, COX6A1, TMEM120B, WDR66, MLXIP, SETD1B, SIRT4, LRRC43, MORN3, GATC, HNF1A-AS1, HPD, LINC01089, ACADS, IL31, MSI1, P2RX4, P2RX7, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, ZCCHC8, DIABLO, PSMD9, PXN, BCL7A, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, RNF34, COQ5, KDM2B, UNC119B, ORAI1, OASL, DYNLL1, SRSF9, CABP1, KNTC1, MLEC, RNF10) 0.353419698605093 96 0.0908583043496754 0.885321238400942 3989 0.278387038563308 3 2 1 -6.75750864704747 LTS-032 chr12 123031331 123078074 46744 * KNTC1 0 1 NA 0.886829351633539 135 0.244109978024093 3 3 0 -5.76494563104458 LTS-032 chr12 123078075 123742032 663958 * c(MIR4304, LOC100507091, MPHOSPH9, ABCB9, HCAR1, HCAR2, ARL6IP4, PITPNM2, OGFOD2, VPS37B, CCDC62, DENR, HCAR3, HIP1R, C12orf65, KNTC1) 0.120172217240084 9 0.151089745221544 0.898054573491186 1358 0.244440307534557 3 3 0 -6.86627966350763 LTS-032 chr12 123742033 123875371 133339 * c(KMT5A, SBNO1, CDK2AP1, C12orf65) 0.416 1 NA 0.883168959193334 222 0.217297054104265 3 3 0 -5.76683887055892 LTS-032 chr12 123875372 124330408 455037 * c(MIR3908, TMED2, SNRNP35, RILPL2, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, RILPL1, KMT5A, DDX55, TCTN2) 0.347612727185725 41 0.0743978346786924 0.891047093465562 1048 0.262707406973348 3 2 1 -6.73656755978468 LTS-032 chr12 124330409 124330440 32 * DNAH10 0.4 1 NA 1.482 1 NA NA NA NA NA LTS-032 chr12 124330441 133498938 9168498 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NA NA NA NA NA NA NA NA NA LTS-032 NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.338613077573822 138 0.0649545475761308 0.963062677478109 5402 0.243285114395559 3 2 1 -6.96139213984737 LTS-032 NA NA NA NA LTS-032 chr12 133498939 133499024 86 * ZNF605 NA 0 NA 0.63 1 NA NA NA NA NA LTS-032 chr12 133499025 133811705 312681 * c(ZNF605, ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.324242807448213 6 0.154891897786811 0.841005402921079 844 0.183407696707683 3 2 1 -6.79006311845702 LTS-032 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.843641959177884 19 0.0892521888604099 3 NA NA -5.76493827216988 LTS-032 chr13 19271620 20038584 766965 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C, TPTE2) 0.374 1 NA 0.890595295915858 119 0.395001599898682 3 3 0 -5.76697485679871 LTS-032 chr13 20038585 33639062 13600478 * c(LINC00426, PAN3-AS1, MIR2276, MINOS1P1, SACS-AS1, LINC00327, TEX26-AS1, MIR4499, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00424, SPATA13-AS1, FRY, USPL1, CDK8, SAP18, N4BP2L2, CDX2, GJB6, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, EEF1AKMT1, SKA3, MICU2, SPATA13, LNX2, FGF9, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, SACS, LATS2, SNORD102, NA NA NA NA NA NA NA NA NA LTS-032 GJA3, GJB2, GPR12, SLC46A3, GTF3A, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, ATP8A2, IL17D, UBL3, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, MIPEPP3, SLC7A1, BRCA2, ZMYM2, MRPL57, IFT88, KATNAL1, MEDAG, N4BP2L1, MTMR6, ZMYM5, TPTE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 KL, NUP58) 0.322125667505461 126 0.0852885421881007 0.891388596186852 8295 0.245189750881359 3 2 1 -6.90117493478315 LTS-032 NA NA NA NA LTS-032 chr13 33639063 40364821 6725759 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.345768044598593 80 0.0755920419343033 0.936865214703243 2926 0.26001977913759 3 2 1 -6.76073375633884 LTS-032 chr13 40364822 61989268 21624447 * c(LINC00462, TPT1-AS1, MIR1297, MIR759, MIR320D1, MIR3169, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, LINC00332, DIAPH3-AS1, DIAPH3-AS2, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, OLFM4, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, NA NA NA NA NA NA NA NA NA LTS-032 ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, PCDH17, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, LINC00548, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, COG6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RB1, TSC22D1-AS1, LINC00598, LINC00371, SERPINE3, PCDH20, SNORA31, MIR621, TPT1, PRR20B, PRR20D, PRR20E, NAA16, RNASEH2B, DHRS12, RUBCNL, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.340002330010946 129 0.0605223597687396 0.876639646302991 7822 0.573516466069544 3 2 1 -6.82616467057298 LTS-032 NA NA NA NA LTS-032 chr13 61989269 61989377 109 * PCDH20 NA 0 NA 1.248 1 NA NA NA NA NA LTS-032 chr13 61989378 66877150 4887773 * c(OR7E156P, PCDH9, PCDH20) 0.330709630847433 2 0.0417193000900063 1.13234676448691 30 0.277771790893337 4 3 1 -7.92872843920962 LTS-032 chr13 66877151 70275094 3397944 * c(PCDH9-AS2, PCDH9-AS3, LINC00550, PCDH9, KLHL1) 0.244 1 NA 1.22207081341924 135 0.309113002856726 4 4 0 -5.77669033781967 LTS-032 chr13 70275095 103280293 33005199 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, DACH1, NA NA NA NA NA NA NA NA NA LTS-032 GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, FGF14, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, OXGR1, FGF14-IT1, FGF14-AS2, GPR18, UBAC2, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, MZT1, PCCA, POU4F1, NDFIP2, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, TPP2, LMO7DN, ACOD1, UCHL3, ZIC2, RNF219, BORA, SLITRK6, STK24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TMTC4, ZIC5, GGACT, SCEL, CLDN10, ITGBL1, TM9SF2, TBC1D4) 0.25819895063409 110 0.068406760660674 1.17849755422581 7127 0.372523800470133 4 3 1 -6.76898679665983 LTS-032 NA NA NA NA LTS-032 chr13 103280294 103518429 238136 * c(BIVM-ERCC5, METTL21C, ERCC5, BIVM, CCDC168, TPP2, KDELC1, TEX30) 0.263803543487301 6 0.0408970251566867 1.0723337365449 930 0.219331730282783 4 3 1 -6.77572558725886 LTS-032 chr13 103518430 114839373 11320944 * c(LINC00552, MCF2L-AS1, GAS6-AS2, BIVM-ERCC5, MIR548AS, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, ERCC5, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SLC10A2, SOX1, NA NA NA NA NA NA NA NA NA LTS-032 TFDP1, LINC00460, FAM155A, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.258810782056738 98 0.0763221307452143 1.21995764370146 4473 0.408094792457282 4 3 1 -6.76355160403638 LTS-032 NA NA NA NA LTS-032 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.597 1 NA NA NA NA NA LTS-032 chr13 114897818 115064542 166725 * c(RASA3, UPF3A, CDC16) 0.260470269749204 2 0.00848528137423858 1.00053163652999 140 0.203623693692786 4 3 1 -7.33988070763585 LTS-032 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.964656401918716 85 0.183578591997476 3 NA NA -5.76568785635189 LTS-032 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.14 1 NA 1.73750642129887 5 1.26488703052881 6 6 0 -5.76441505864995 LTS-032 chr14 20201562 21793406 1591845 * c(SNORD126, PARP2, EDDM3A, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, ANG, LINC00641, SLC39A2, HNRNPC, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, RPGRIP1, NDRG2, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, TMEM253, METTL17, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, NA NA NA NA NA NA NA NA NA LTS-032 RPPH1, TMEM55B, TTC5) 0.121661320283149 115 0.0395328615153027 2.54242895398285 2540 2.21584036764167 9 8 1 -6.73667842385779 LTS-032 NA NA NA NA LTS-032 chr14 21793407 22409462 616056 * c(SUPT16H, OR10G3, OR10G2, OR4E2, SNORD8, METTL3, RPGRIP1, CHD8, SALL2, SNORD9, RAB2B, TOX4) 0.141089411464579 33 0.0233238481803367 2.20696763622074 1181 0.494795596078239 8 7 1 -6.73750568637775 LTS-032 chr14 22409463 22409596 134 * character(0) NA 0 NA 2.721 1 NA NA NA NA NA LTS-032 chr14 22409597 22591988 182392 * character(0) 0.131194655683209 7 0.0233227867321292 2.61403446995356 205 0.682800693006501 9 8 1 -6.77878259242805 LTS-032 chr14 22591989 22592190 202 * character(0) NA 0 NA 3.44732878271993 5 0.342812193482087 12 NA NA -5.76441033399423 LTS-032 chr14 22592191 22600491 8301 * character(0) NA 0 NA 1.134 1 NA NA NA NA NA LTS-032 chr14 22600492 22739862 139371 * character(0) 0.441 1 NA 0.829151431973217 97 0.190674233262495 3 3 0 -5.78777348297805 LTS-032 chr14 22739863 22991095 251233 * character(0) 0.462878843575792 10 0.0145560220451117 0.848869974466545 381 0.223727156937831 2 1 1 -8.73003314090889 LTS-032 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.602 1 NA NA NA NA NA LTS-032 chr14 22992444 25326316 2333873 * c(MIR208B, NEDD8-MDP1, BCL2L2-PABPN1, MIR4707, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, ADCY4, ACIN1, KHNYN, SLC7A8, NGDN, LRP10, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NRL, OXA1L, EMC9, PCK2, GMPR2, SLC22A17, HAUS4, C14orf119, RNF31, RBM23, NA NA NA NA NA NA NA NA NA LTS-032 DHRS4-AS1, LTB4R2, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, RABGGTA, BCL2L2, C14orf93, ABHD4, CBLN3, CDH24, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, REC8) 0.441586780990678 131 0.082370748589142 0.636583821527893 6514 0.186001839237888 2 1 1 -6.74085800693282 LTS-032 NA NA NA NA LTS-032 chr14 25326317 26939332 1613016 * c(STXBP6, NOVA1) 0.462 1 NA 0.681569581320419 83 0.149495921553966 2 2 0 -5.91980452646657 LTS-032 chr14 26939333 30045978 3106646 * c(MIR4307, LINC00645, MIR548AI, FOXG1, LINC01551, NOVA1, PRKD1) 0.38 1 NA 0.728990325339987 187 0.217136048984539 2 2 0 -6.35047647088448 LTS-032 chr14 30045979 30132962 86984 * c(MIR548AI, PRKD1) NA 0 NA 0.717578465274916 97 0.123323622435101 2 NA NA -5.80728001666808 LTS-032 chr14 30132963 30132968 6 * c(MIR548AI, PRKD1) NA 0 NA 0.99 1 NA NA NA NA NA LTS-032 chr14 30132969 39617184 9484216 * c(SLC25A21-AS1, LOC100506071, MIR4503, MIR548AI, PTCSC3, LINC00609, SEC23A, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, TRAPPC6B, MIPOL1, CLEC14A, COCH, SPTSSA, SCFD1, RALGAPA1, SFTA3, HECTD1, HEATR5A, NKX2-8, IGBP1P1, LINC00639, FAM177A1, GPR33, STRN3, FOXA1, ARHGAP5, NFKBIA, PAX9, MBIP, PPP2R3C, G2E3, EAPP, PRKD1, PSMA6, SNX6, NPAS3, SRP54, SSTR1, MIR624, NKX2-1, NUBPL, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, SLC25A21, NA NA NA NA NA NA NA NA NA LTS-032 AKAP6, KIAA0391) 0.33764677516943 93 0.0732468448501702 0.904190845206482 4747 0.252051173553075 3 2 1 -6.76584251475151 LTS-032 NA NA NA NA LTS-032 chr14 39617185 45543315 5926131 * c(LOC100288846, NA, C14orf28, TRAPPC6B, LRFN5, FAM179B, FBXO33, MIA2, PNN, KLHL28, FSCB) 0.348904392888315 13 0.056423081292713 0.812345279973261 948 0.2494105749623 3 2 1 -7.47615131552936 LTS-032 chr14 45543316 45687689 144374 * c(SNORD127, FKBP3, FAM179B, PRPF39, MIS18BP1, FANCM) 0.227 1 NA 0.366644831346409 390 0.106333050641327 1 1 0 -5.76447027764984 LTS-032 chr14 45687690 45693078 5389 * MIS18BP1 NA 0 NA 0.706 1 NA NA NA NA NA LTS-032 chr14 45693079 45711758 18680 * MIS18BP1 NA 0 NA 0.634854742883217 53 0.136004943669219 2 NA NA -5.76447459378218 LTS-032 chr14 45711759 45711916 158 * MIS18BP1 NA 0 NA 0.878 1 NA NA NA NA NA LTS-032 chr14 45711917 66963090 21251174 * c(KTN1-AS1, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, TMEM30B, MDGA2, LINC01599, ESR2, NID2, ATG14, ZBTB1, DAAM1, SAMD4A, SYNE2, FNTB, KLHDC2, FUT8, NA NA NA NA NA NA NA NA NA LTS-032 PLEKHG3, GCH1, TIMM9, ATP5S, KCNH5, GMFB, LINC01588, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, C14orf39, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, TBPL2, TOMM20L, KTN1, LGALS3, FLJ22447, MAX, MGAT2, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, ATL1, NIN, DACT1, JKAMP, DHRS7, C14orf166, SIX4, POLE2, GNG2, TMEM260, PPM1A, FBXO34, DNAAF2, C14orf105, PPP2R5E, MIS18BP1, AP5M1, PRKCH, ACTR10, PSMA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PSMC6, PELI2, PTGDR, PTGER2, RHOJ, TXNDC16, TRMT5, PYGL, ARID4A, SAV1, RPL36AL, RPS29, RTN1, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SNAPC1, SOS2, SPTB, STYX, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, SGPP1, TMX1, SYT16, CDKL1, NEMF, CHURC1, MAPK1IP1L, AKAP5, KIAA0586, DLGAP5) 0.351428657834025 214 0.0684492769788908 0.887762277261965 12873 0.252847293095731 3 2 1 -6.93956400084892 LTS-032 NA NA NA NA LTS-032 chr14 66963091 66971887 8797 * LINC00238 NA 0 NA 0.544 1 NA NA NA NA NA LTS-032 chr14 66971888 67525734 553847 * GPHN NA 0 NA 0.682186119730651 95 0.153706496681372 2 NA NA -5.81729948377195 LTS-032 chr14 67525735 67555680 29946 * GPHN NA 0 NA 1.182 1 NA NA NA NA NA LTS-032 chr14 67555681 68353923 798243 * c(GPHN, VTI1B, RDH12, FAM71D, TMEM229B, EIF2S1, ZFYVE26, PLEK2, ARG2, RDH11, ATP6V1D, PIGH, PLEKHH1, RAD51B, MPP5) 0.354923472276898 27 0.0470770720441566 0.925979875402231 1454 0.229900591139043 3 2 1 -6.74325350439261 LTS-032 chr14 68353924 68713810 359887 * RAD51B NA 0 NA 0.568 1 NA NA NA NA NA LTS-032 chr14 68713811 69117642 403832 * RAD51B 0.433947801523251 5 0.0628474343151731 0.615396804979508 112 0.142693631005285 2 1 1 -6.75340837749079 LTS-032 chr14 69117643 69254334 136692 * RAD51B NA 0 NA 0.913 1 NA NA NA NA NA LTS-032 chr14 69254335 73989983 4735649 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, ACTN1-AS1, ERH, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, PLEKHD1, MAP3K9, COX16, ZFYVE1, EXD2, SYNJ2BP, SLC39A9, PSEN1, CCDC177, GALNT16, RBM25, SMOC1, SRSF5, SLC8A3, SLC10A1, ZFP36L1, DPF3, NUMB, ACTN1, ADAM21, ADAM20, DCAF5, PAPLN, RGS6, SUSD6) 0.345899453964169 64 0.0943869473673841 0.911508383466048 3821 0.248246889006382 3 2 1 -6.73550694924761 LTS-032 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.334 1 NA NA NA NA NA LTS-032 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.406818527467142 43 0.162735043405406 1 NA NA -5.76888759804845 LTS-032 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.713 1 NA NA NA NA NA LTS-032 chr14 74035793 74568021 532229 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, ALDH6A1, COQ6, ZNF410, ACOT1, ACOT6, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.339543182844775 51 0.0476100170708875 0.860296485752823 1241 0.513625987416118 3 2 1 -6.76169299693454 LTS-032 chr14 74568022 74971775 403754 * c(MIR4709, NPC2, ISCA2, VSX2, LTBP2, VRTN, ABCD4, SYNDIG1L, LIN52) 0.475059188155387 12 0.0221460373362137 0.675814646675021 582 0.132661094554369 2 1 1 -8.35785694375998 LTS-032 chr14 74971776 76231090 1259315 * c(BATF, TMED10, C14orf1, JDP2, DLST, TTLL5, FOS, MLH3, PROX2, LTBP2, FCF1, PGF, FLVCR2, YLPM1, LINC01220, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1, AREL1) 0.354182658028025 57 0.0894850066549704 0.861085801200077 2113 0.187315952701789 3 2 1 -6.81980434374761 LTS-032 chr14 76231091 79181418 2950328 * c(MIR1260A, AHSA1, IFT43, NOXRED1, LRRC74A, ISM2, SAMD15, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, GPATCH2L, ADCK1, TMEM63C, NGB, VIPAS39, IRF2BPL, TGFB3, SLIRP, CIPC, ALKBH1, NRXN3, SPTLC2) 0.334346690607827 66 0.0626920471343278 0.925025843266223 2641 0.245738110818482 3 2 1 -6.76781737939779 LTS-032 chr14 79181419 79269905 88487 * NRXN3 NA 0 NA 1.582 1 NA NA NA NA NA LTS-032 chr14 79269906 79454525 184620 * NRXN3 0.428 1 NA 1.47500893490022 44 0.485128007779747 5 5 0 -5.76441826738914 LTS-032 chr14 79454526 79745656 291131 * NRXN3 NA 0 NA 0.926 1 NA NA NA NA NA LTS-032 chr14 79745657 94087454 14341798 * c(SNORA11B, DIO2-AS1, LINC00911, FBLN5, PTPN21, FOXN3, CHGA, TTC8, TC2N, SLC24A4, CEP128, TTC7B, EML5, DIO2, FLRT2, GALC, TMEM251, LOC283585, LINC01146, FOXN3-AS2, GTF2A1, ITPK1-AS1, COX8C, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, UBR7, PPP4R3A, BTBD7, TDP1, SPATA7, LGMN, KCNK13, PSMC1, UNC79, SEL1L, MOAP1, SNORA79, TSHR, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, NA NA NA NA NA NA NA NA NA LTS-032 GON7, GPR65, STON2, EFCAB11, RPS6KA5, TRIP11, NRXN3, GOLGA5) 0.358456060340308 120 0.0651189388002921 0.928448055350516 6405 0.253941900418645 3 2 1 -6.76516235586641 LTS-032 NA NA NA NA LTS-032 chr14 94087455 94087946 492 * UNC79 NA 0 NA 0.576 1 NA NA NA NA NA LTS-032 chr14 94087947 94395973 308027 * c(PRIMA1, FAM181A-AS1, UNC79, FAM181A) 0.40967020889313 9 0.150946274474655 0.667889356258062 299 0.179932742841065 2 1 1 -6.75750589768547 LTS-032 chr14 94395974 94423294 27321 * ASB2 0.449 1 NA 0.67477933805416 87 0.157581536537686 2 2 0 -5.76610481130541 LTS-032 chr14 94423295 95675788 1252494 * c(MIR3173, SERPINA3, IFI27L1, GSC, SERPINA12, DICER1, LINC00521, SERPINA11, SERPINA9, IFI27, SERPINA13P, DICER1-AS1, SERPINA5, SERPINA10, ASB2, SERPINA1, SERPINA4, DDX24, PPP4R4, OTUB2, CLMN, IFI27L2, SERPINA6) 0.442412867174867 43 0.048836609182623 0.665309597736016 1449 0.162539499624755 2 1 1 -6.78980880086905 LTS-032 chr14 95675789 95786168 110380 * CLMN 0.213 1 NA 0.402654476262663 46 0.0880611475083257 1 1 0 -5.84288212328871 LTS-032 chr14 95786169 95875428 89260 * c(LINC00341, CLMN) NA 0 NA 0.74 1 NA NA NA NA NA LTS-032 chr14 95875429 101526181 5650753 * c(MIR300, MIR665, MIR543, MIR889, LOC100129345, MIR1185-1, MIR1185-2, MIR1197, MIR1193, TUNAR, MIR2392, MIR5698, CYP46A1, PAPOLA, AK7, SLC25A29, DEGS2, SYNE3, EML1, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CCDC85C, LINC01550, RTL1, MIR127, MIR134, MIR136, MIR154, MIR299, MIR323A, MIR337, MIR345, MIR376C, MIR376A1, MIR379, MIR380, MIR381, MIR382, GLRX5, EVL, GSKIP, ATG2B, MEG3, C14orf132, MIR433, MIR431, NA NA NA NA NA NA NA NA NA LTS-032 MIR329-1, MIR329-2, MIR323B, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, BEGAIN, MIR487A, BDKRB1, BDKRB2, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, MEG8, WDR25, LINC00341, TCL1A, SETD3, HHIPL1, DLK1, CCNK, TCL1B) 0.454555048332958 71 0.0360058010081351 0.679481194360076 3866 0.36087846776068 2 1 1 -7.01305466738805 LTS-032 NA NA NA NA LTS-032 chr14 101526182 101530925 4744 * c(MIR541, MIR377, MIR496) 0 1 NA 0.769016130116575 13 0.705492426679808 3 3 0 -5.76458779042421 LTS-032 chr14 101530926 103440551 1909626 * c(MIR1247, MIR4309, MEG9, ANKRD9, LINC00239, DIO3, DYNC1H1, RCOR1, HSP90AA1, MIR369, CINP, PPP2R5C, ZNF839, MIR409, MIR412, MIR410, MOK, TRAF3, MIR656, AMN, WDR20, CDC42BPB, TECPR2) 0.399881534857102 13 0.126226546437907 0.650938502030925 2100 0.293001050063983 2 1 1 -6.77867770422046 LTS-032 chr14 103440552 103442017 1466 * CDC42BPB NA 0 NA 0.82 1 NA NA NA NA NA LTS-032 chr14 103442018 106091697 2649680 * c(ZBTB42, LINC00605, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, EIF5, AKT1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, XRCC3, ZFYVE21, TMEM121, APOPT1, BTBD6, MTA1, EXOC3L4, BAG5, C14orf2, CDC42BPB) 0.345189110612148 135 0.0733850616592875 0.948482109988676 4422 0.250596268221051 3 2 1 -6.76290656541246 LTS-032 chr14 106091698 106318248 226551 * ELK2AP 0.256 1 NA 0.990918532898967 118 0.369614985792959 3 3 0 -5.77034146577035 LTS-032 chr14 106318249 107282973 964725 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.279205522904007 52 0.115335761402178 1.00872060924757 568 0.636990180515489 4 3 1 -6.77779905687058 LTS-032 chr14 107282974 107283157 184 * character(0) NA 0 NA 1.09082289587069 6 0.56478491481271 4 NA NA -5.7644128980752 LTS-032 chr15 20169987 20446043 276057 * character(0) 0.454 1 NA 1.09398637641448 23 0.294781804480813 4 4 0 -5.77870521826656 LTS-032 chr15 20446044 22466126 2020083 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.361652157557228 39 0.0763250382966504 1.3034082319716 258 0.511623400526655 5 3 2 -6.95236374482563 LTS-032 chr15 22466127 22567047 100921 * REREP3 NA 0 NA 1.28455143923043 27 0.474795919571941 4 NA NA -5.76587580061479 LTS-032 chr15 22567048 22690470 123423 * REREP3 NA 0 NA 0.705 1 NA NA NA NA NA LTS-032 chr15 22690471 22840279 149809 * c(GOLGA8DP, TUBGCP5, GOLGA6L1) 0.053 1 NA 0.662018842585358 17 0.429676691040519 2 2 0 -5.76489573987101 LTS-032 chr15 22840280 23259393 419114 * c(TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, NIPA2) 0.0668258575668668 22 0.0215616000659181 0.682859310665768 612 0.542394503932708 2 2 0 -6.74974520303002 LTS-032 chr15 23259394 23688944 429551 * c(HERC2P7, GOLGA8IP, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.139506546348946 7 0.160616965242808 1.18255742345579 55 0.487740901714616 5 4 1 -6.92485759543928 LTS-032 chr15 23688945 23689011 67 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-032 chr15 23689012 30502880 6813869 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-032 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, LOC100289656, MIR4508, MIR4715, PWAR1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, DKFZP434L187, APBA2, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, HERC2P9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 WHAMMP2, NDN, OCA2, LINC00929, MAGEL2, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8T, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, HERC2, SNURF) 0.0683384755232684 26 0.0708871258789959 0.674007237619526 2528 0.21400289518469 2 2 0 -6.9447545596386 LTS-032 NA NA NA NA LTS-032 chr15 30502881 30664587 161707 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.397807026160846 51 0.25528989903445 1 NA NA -5.7749898586698 LTS-032 chr15 30664588 30665163 576 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 1.1 1 NA NA NA NA NA LTS-032 chr15 30665164 41793794 11128631 * c(SRP14-AS1, ANKRD63, WHAMMP1, LOC100288637, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, FAN1, GOLGA8A, RTF1, LPCAT4, NUTM1, DKFZP434L187, GCHFR, GREM1, RPUSD2, LOC283710, FAM98B, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, NA NA NA NA NA NA NA NA NA LTS-032 MIR211, MEIS2, TRPM1, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, KLF13, PLCB2, DLL4, INO80, PPP1R14D, MTMR10, ZNF770, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, SCG5, C15orf56, PHGR1, SPINT1, SRP14, ACTC1, BUB1B, THBS1, ANP32AP1, GOLGA8O, OIP5-AS1, CHAC1, KATNBL1, C15orf41, ZFYVE19, DISP2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6 NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ) 0.0858301527054656 195 0.0655333622682554 0.62694904748223 8436 0.198618103371963 2 2 0 -6.85469100311265 LTS-032 NA NA NA NA LTS-032 chr15 41793795 43594529 1800735 * c(JMJD7, PLA2G4B, MIR4310, TGM7, PLA2G4E, TTBK2, CDAN1, UBR1, EPB42, MAPKBP1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, PLA2G4D, EHD4, ITPKA, LTK, SPTBN5, HAUS2, STARD9, ZNF106, MIR626, MIR627, TYRO3, TMEM62, CAPN3, JMJD7-PLA2G4B, SNAP23, TGM5) 0.0722092334685815 103 0.030840463826334 0.662030435518839 4268 0.19484775934673 2 2 0 -6.76425974172462 LTS-032 chr15 43594530 43619957 25428 * character(0) NA 0 NA 0.587 1 NA NA NA NA NA LTS-032 chr15 43619958 45060004 1440047 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, CATSPER2, TRIM69, ZSCAN29, STRC, ADAL, PATL2, HYPK, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, TP53BP1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J, PPIP5K1, LCMT2) 0.0703969565063631 38 0.0276617961173551 0.608852701012914 2718 0.176904950343613 2 2 0 -6.80724240531011 LTS-032 chr15 45060005 45060093 89 * TRIM69 NA 0 NA 0.561 1 NA NA NA NA NA LTS-032 chr15 45060094 45119384 59291 * character(0) 0.166683446750806 9 0.0274033655678357 0.229593205781671 39 0.171790703718044 1 1 0 -8.22287291485938 LTS-032 chr15 45119385 45120601 1217 * character(0) NA 0 NA 0.737 1 NA NA NA NA NA LTS-032 chr15 45120602 45361180 240579 * c(TERB2, SORD) 0.029 1 NA 0.624775306002529 113 0.159013416889733 2 2 0 -5.76836179486789 LTS-032 chr15 45361181 45365724 4544 * SORD 0.353 1 NA 1.01323219781346 7 0.510935696261561 3 3 0 -5.76451353833702 LTS-032 chr15 45365725 45366583 859 * SORD 0.383512861007293 12 0.0642233319256823 0.909632924792512 30 0.571349264118888 13 8 5 -6.73631977935906 LTS-032 chr15 45366584 45444133 77550 * c(DUOXA2, DUOX2, DUOX1, SORD, DUOXA1) 0.092 1 NA 0.670913544855442 411 0.142186966700523 2 2 0 -5.76905247316236 LTS-032 chr15 45444134 67664589 22220456 * c(MIR147B, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, NDUFAF4P1, MIR2116, MIR4311, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4511, MIR4712, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, SLC27A2, LACTB, DIS3L, LEO1, MTFMT, SLC51B, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, CYP19A1, DYX1C1, DUT, FAM227B, MGC15885, LCTL, FBN1, FGF7, CEP152, ZNF609, DMXL2, AP4E1, DAPK2, NA NA NA NA NA NA NA NA NA LTS-032 EID1, GABPB1, LYSMD2, WDR72, GALK2, PYGO1, BLOC1S6, GATM, FOXB1, HMGN2P46, SLC24A5, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, USP50, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, LIPC, SHC4, CTXN2, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, MYEF2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, DUOX1, CSNK1G1, FAM63B, RNF111, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, FLJ10038, MNS1, MYO5C, MAPK6, MAP2K1, FAM214A, DTWD1, IGDCC4, SQRDL, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, IQCH, RFX7, SLC12A1, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, SLC30A4, SPATA5L1, ICE2, AAGAB, SLTM, SNX22, ATP8B4, SEMA6D, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, C15orf48, MEGF11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CILP, SPPL2A, CGNL1, RAB11A, ALDH1A2, HERC1, SHF, USP8, CCNB2, SLC28A2, SLC24A1, CCPG1, GCNT3, LDHAL6B, COPS2, TRIP4, PIGB, IGDCC3, SECISBP2L, KIAA0101, USP3) 0.0682826951196585 329 0.0394145464040039 0.635821164404276 17929 0.201658365248784 2 2 0 -6.75947683542009 LTS-032 NA NA NA NA LTS-032 chr15 67664590 74628891 6964302 * c(NR2E3, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, IQCH-AS1, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, C15orf61, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, LINC00593, MYO9A, NEO1, PKM, PML, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, MAP2K5, THAP10, PARP6, ISLR2, BBS4, CELF6, RPLP1, STRA6, IQCH, MIR629, NA NA NA NA NA NA NA NA NA LTS-032 MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, CD276, ANP32A, ADPGK, PIAS1, CALML4, STOML1, KIF23) 0.0716946228303774 97 0.0533458311978131 0.667993641086016 5474 0.612729505246983 2 2 0 -6.75186272096619 LTS-032 NA NA NA NA LTS-032 chr15 74628892 74753167 124276 * c(CYP11A1, LOC729739, SEMA7A, UBL7) NA 0 NA 0.636556475895363 232 0.149571281647832 2 NA NA -5.76460455073952 LTS-032 chr15 74753168 74836132 82965 * c(ARID3B, UBL7-AS1, UBL7) NA 0 NA 1.162 1 NA NA NA NA NA LTS-032 chr15 74836133 74889298 53166 * ARID3B 0.49 1 NA 1.21355488129849 83 0.474589884663319 4 4 0 -5.76445117037052 LTS-032 chr15 74889299 80672252 5782954 * c(DNM1P35, MIR4313, ST20-MTHFS, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CLK3, TMEM266, HYKK, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, ODF3L1, SCAMP5, ETFA, FAH, TBC1D2B, ACSBG1, KIAA1024, TMED3, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, ST20-AS1, LINC00927, IDH3A, IREB2, ANKRD34C, ST20, MIR184, MAN2C1, MPI, SCAPER, ZFAND6, NA NA NA NA NA NA NA NA NA LTS-032 RPP25, COMMD4, IMP3, DNAJA4, PSMA4, C15orf39, FAM219B, PTPN9, RASGRF1, CPLX3, RCN2, BCL2A1, PPCDC, LOC645752, SH2D7, LOC646938, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, ANKRD34C-AS1, TYRO3P, NEIL1, LMAN1L, PEAK1, EDC3, WDR61, LINC00597, LINGO1, PSTPIP1, LOC91450, UBE2Q2, COX5A) 0.439940166021682 104 0.0946275663162986 1.18887563301243 5819 0.320305141096235 4 2 2 -6.73605722274335 LTS-032 NA NA NA NA LTS-032 chr15 80672253 80672310 58 * character(0) 0.375 1 NA 1.921 1 NA NA NA NA NA LTS-032 chr15 80672311 86697765 6025455 * c(NA, UBE2Q2P2, MIR1276, NA, UBE2Q2L, LINC00933, MIR4514, MIR4515, AKAP13, C15orf40, AGBL1, WHAMM, FSD2, CFAP161, MESDC2, SEC11A, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, NMB, HDGFRP3, PDE8A, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, CEMIP, ALPK3, ABHD17C, MESDC1, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, NA NA NA NA NA NA NA NA NA LTS-032 SCARNA15, MIR549A, EFL1, STARD5, AP3B2, FAM103A1, MEX3B, WDR73, SLC28A1, HOMER2, ZNF592, ARNT2) 0.399585318031063 58 0.0693000285021098 1.46526061340974 4133 0.332450971913101 5 3 2 -6.73341700716796 LTS-032 NA NA NA NA LTS-032 chr15 86697766 86702122 4357 * AGBL1 NA 0 NA 1.278 1 NA NA NA NA NA LTS-032 chr15 86702123 88799340 2097218 * c(AGBL1, LINC00052, NTRK3-AS1, NTRK3, AGBL1-AS1) 0.406067584897614 18 0.117491829781306 1.31157459730576 613 0.382779841762746 4 2 2 -6.84207753217384 LTS-032 chr15 88799341 89415247 615907 * c(MIR1179, MIR3529, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, AEN, MRPS11) 0.360907824265615 8 0.0465525816377874 1.75418034858855 432 0.358960470104287 6 4 2 -6.83608459052758 LTS-032 chr15 89415248 89417238 1991 * ACAN 0.349 1 NA 2.26249327047897 13 0.17728157380353 8 8 0 -5.76441851332999 LTS-032 chr15 89417239 90015935 598697 * c(ABHD2, HAPLN3, ACAN, MIR9-3HG, MIR9-3, MFGE8, RHCG, POLG, FANCI, RLBP1) 0.309637911338965 21 0.0577580338670775 1.90507319002187 683 0.518758224897006 7 5 2 -6.7748873768293 LTS-032 chr15 90015936 90774259 758324 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, MESP2, LINC00928, ANPEP, IDH2, ARPIN, KIF7, ZNF710, RHCG, PLIN1, MESP1, WDR93, PEX11A, TICRR) 0.236119670400714 30 0.0595805646008908 2.34710259108429 1352 0.619339364167757 9 7 2 -6.74587958252689 LTS-032 chr15 90774260 90774354 95 * CIB1 NA 0 NA 2.093 1 NA NA NA NA NA LTS-032 chr15 90774355 99502721 8728367 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, MIR4714, SPATA8-AS1, CIB1, CHD2, LINC00924, C15orf32, SPATA8, FES, GABARAPL3, VPS33B, SLCO3A1, FAM169B, ZNF774, IGF1R, HDDC3, GDPGP1, FAM174B, LINC01197, MAN2A2, TTLL13P, LOC440311, FURIN, NGRN, MCTP2, UNC45A, RGMA, BLM, NR2F2-AS1, CRTC3, NR2F2, ASB9P1, ST8SIA2, IQGAP1, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.275990404359669 73 0.0379603153350292 2.0343591424314 3681 0.479823722419452 7 5 2 -6.88398845643941 LTS-032 chr15 99502722 100331819 829098 * c(LRRC28, LYSMD4, PGPEP1L, DNM1P46, SYNM, IGF1R, MEF2A, TTC23, HSP90B2P) 0.326711211134056 10 0.0460984453823192 1.75977387288422 810 0.660872362413111 6 4 2 -6.79387766993633 LTS-032 chr15 100331820 100332215 396 * DNM1P46 0.404 1 NA 1.81087966545624 10 0.387051819671619 6 6 0 -5.76441232689925 LTS-032 chr15 100332216 100657186 324971 * c(ADAMTS17, DNM1P46) 0.419172389358308 4 0.0420713679359253 1.92105070293598 151 0.384812690767492 7 4 3 -6.73638392308612 LTS-032 chr15 100657187 100672122 14936 * ADAMTS17 NA 0 NA 1.343 1 NA NA NA NA NA LTS-032 chr15 100672123 101844924 1172802 * c(ASB7, ADAMTS17, CERS3, ALDH1A3, CHSY1, SPATA41, PRKXP1, PCSK6, LINS1, SELENOS, SNRPA1, LRRK1) 0.434401255136328 46 0.0905616319350748 1.17222875067847 1052 0.280257330690297 4 2 2 -6.73584740402778 LTS-032 chr15 101844925 101858737 13813 * c(LOC100507472, PCSK6) NA 0 NA 1.24875726119163 31 0.246774112024725 4 NA NA -5.7646933005571 LTS-032 chr15 101858738 101862694 3957 * PCSK6 NA 0 NA 0.592 1 NA NA NA NA NA LTS-032 chr15 101862695 101922323 59629 * PCSK6 0.101 1 NA 0.722255722172067 49 0.406700496947922 2 2 0 -5.76745454470474 LTS-032 chr15 101922324 102516492 594169 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PCSK6, TM2D3) 0.12933536216903 13 0.118274127478368 0.624748674007533 406 0.207166504040883 2 2 0 -6.88589362471029 LTS-032 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.299 1 NA NA NA NA NA LTS-032 chr16 81704 81779 76 * character(0) 0.45 1 NA 1.202 1 NA NA NA NA NA LTS-032 chr16 81780 337441 255662 * c(HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, POLR3K, LUC7L, RHBDF1, PDIA2, SNRNP25, NPRL3, AXIN1, FAM234A, RGS11) 0.434809246721524 7 0.0764737739047714 0.594874138108459 752 0.188176357221404 2 1 1 -6.75765786305096 LTS-032 chr16 337442 337445 4 * c(LUC7L, AXIN1) NA 0 NA 0.992 1 NA NA NA NA NA LTS-032 chr16 337446 1397815 1060370 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSD1, TPSG1, DECR2, NHLRC4, SOX8, JMJD8, PRR25, C1QTNF8, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, NARFL, LINC00235, TPSB2, LMF1, FAM173A, CAPN15, SSTR5, TPSAB1, MIR662, UBE2I, METRN, AXIN1, WDR24, HAGHL, METTL26, MCRIP2, CACNA1H, BAIAP3, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.441836002240445 114 0.0678777200421796 0.64402649375513 3225 0.170211562053959 2 1 1 -6.74199278344053 LTS-032 chr16 1397816 1445891 48076 * c(TSR3, UNKL, GNPTG, BAIAP3) NA 0 NA 0.636173619995354 231 0.130226765691777 2 NA NA -5.76452559401908 LTS-032 chr16 1445892 1447118 1227 * UNKL NA 0 NA 1.125 1 NA NA NA NA NA LTS-032 chr16 1447119 1485095 37977 * c(C16orf91, CCDC154, UNKL) 0 1 NA 0.898116347105341 97 0.350564446060813 3 3 0 -5.76449256497765 LTS-032 chr16 1485096 2650578 1165483 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, LINC00254, ABCA17P, MRPS34, NA NA NA NA NA NA NA NA NA LTS-032 SNORA78, TSC2, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.329005242852615 87 0.0631819734966113 0.920552842863306 3818 0.216817170570062 3 2 1 -6.79285066232879 LTS-032 NA NA NA NA LTS-032 chr16 2650579 2650690 112 * PDPK1 NA 0 NA 0.069 1 NA NA NA NA NA LTS-032 chr16 2650691 2747830 97140 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.275 1 NA 0.604787292802696 135 0.351387658687272 2 2 0 -5.76604359476994 LTS-032 chr16 2747831 2747857 27 * KCTD5 0.255 1 NA 1.432 1 NA NA NA NA NA LTS-032 chr16 2747858 14968958 12221101 * c(MIR365A, LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, LINC00514, LINC00921, TMEM114, NA NA NA NA NA NA NA NA NA LTS-032 DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, PRSS22, NPIPA3, MMP25, C16orf90, TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, LITAF, SEC14L5) 0.341863695338189 250 0.0623464557628157 0.923991476156361 8527 0.267261267337267 3 2 1 -6.7464225114365 LTS-032 NA NA NA NA LTS-032 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.124 1 NA NA NA NA NA LTS-032 chr16 15068593 15123936 55344 * PDXDC1 0.311459975336153 6 0.0644204936336256 1.28106577396592 115 0.276648517596479 7 5 2 -6.859753855235 LTS-032 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.782 1 NA NA NA NA NA LTS-032 chr16 15125636 28608392 13482757 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-032 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.329994059645604 181 0.0855043014939702 0.935433359452125 9696 0.276351438701103 3 2 1 -6.80312051269485 LTS-032 NA NA NA NA LTS-032 chr16 28608393 28734890 126498 * SULT1A1 NA 0 NA 0.636097964786565 89 0.255543720235876 2 NA NA -5.76449132619397 LTS-032 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.872 1 NA NA NA NA NA LTS-032 chr16 28834304 29367359 533056 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0 1 NA 0.947929614951169 838 0.295378653953118 3 3 0 -5.76837420232594 LTS-032 chr16 29367360 29370593 3234 * SNX29P2 NA 0 NA 0.595 1 NA NA NA NA NA LTS-032 chr16 29370594 29564513 193920 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.345570192932949 39 0.310539489644844 1 NA NA -5.7682450581355 LTS-032 chr16 29564514 29624261 59748 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.715 1 NA NA NA NA NA LTS-032 chr16 29624262 30510571 886310 * c(SLX1B-SULT1A4, CD2BP2, CDIPT, CORO1A, PRRT2, TMEM219, C16orf92, SEPT1, ZNF48, ALDOA, SEPHS2, QPRT, KCTD13, ASPHD1, TBC1D10B, SEZ6L2, C16orf54, INO80E, MYLPF, ITGAL, KIF22, MAZ, SMG1P2, CDIPT-AS1, SULT1A4, ZNF771, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, LOC613038, ZG16, SPN, TBX6, DCTPP1, GDPD3, PAGR1, SLC7A5P1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.325662197419747 23 0.0585499010169181 0.899103994446072 2137 0.203765660737658 3 2 1 -6.8321658286275 LTS-032 chr16 30510572 30544158 33587 * c(MIR4518, ITGAL, ZNF747, ZNF768) 0 1 NA 0.912671265117835 157 0.260151244028778 3 3 0 -5.76441760644231 LTS-032 chr16 30544159 32890852 2346694 * c(CLUHP3, MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, ZNF267, SRCAP, STX1B, ZNF689, ZNF720, COX6A2, ZNF785, ZNF688, PRSS36, CTF1, ZNF629, FUS, PYDC1, FBXL19-AS1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAM, ITGAX, SLC6A10P, LOC390705, YBX3P1, NA, TRIM72, AHSP, PHKG2, FBXL19, PRSS8, FBRS, C16orf58, SLC5A2, ZNF747, SNORA30, STX4, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, ZNF768, ZNF668, ARMC5, HSD3B7, KAT8, NA NA NA NA NA NA NA NA NA LTS-032 CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.33169473473562 13 0.105995948156715 0.90643434297198 3488 0.222618544283414 3 2 1 -6.7530200000209 LTS-032 NA NA NA NA LTS-032 chr16 32890853 33962387 1071535 * c(SLC6A10P, LOC390705, LINC00273) 0.327080341603462 81 0.0932059696466797 1.35607051212483 263 0.682569222926251 6 4 2 -6.83364310643775 LTS-032 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.532 1 NA NA NA NA NA LTS-032 chr16 33965501 33965644 144 * character(0) 0.485 1 NA 0.56346854621068 11 0.33370436017529 2 2 0 -5.76442307562851 LTS-032 chr16 33965645 34682380 716736 * c(LINC01566, UBE2MP1) NA 0 NA 0.939485363301328 117 0.235629677306544 3 NA NA -5.76884861869313 LTS-032 chr16 46508169 46533953 25785 * ANKRD26P1 0 1 NA 0.689927223908601 29 0.287561511946069 2 2 0 -5.76540354890122 LTS-032 chr16 46533954 55846978 9313025 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.0717603741608655 67 0.0443747710704308 0.655595885293217 4669 0.173513397722547 2 2 0 -6.82112184775617 LTS-032 chr16 55846979 55854412 7434 * CES1 0.484 1 NA 0.702146019102647 13 0.383960150843675 2 2 0 -5.76465751029404 LTS-032 chr16 55854413 55867006 12594 * CES1 0.388282402671206 9 0.126874062667583 0.876902323546641 37 0.311889805461401 5 3 2 -6.75947259943672 LTS-032 chr16 55867007 55880720 13714 * c(CES1, CES5A) 0.04 1 NA 0.717252540140738 15 0.566966044166752 2 2 0 -5.76472957327463 LTS-032 chr16 55880721 68867807 12987087 * c(CDH3, CDH5, MIR3935, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, CETP, NUDT21, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, LRRC29, AMFR, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, CCDC113, TMEM208, CFAP20, NA NA NA NA NA NA NA NA NA LTS-032 FHOD1, ZDHHC1, MT1DP, HSD11B2, HSF4, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR138-2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, FAM96B, TPPP3, POLR2C, PRMT7, DUS2, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 DPEP2, DPEP3, MT1IP, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNORA46, SNORA50A, TK2, CA7, FAM65A, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, MT4, B3GNT9, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.066380004669785 108 0.0270626540590785 0.654319894963624 10095 0.181634085206388 2 2 0 -6.83600822667413 LTS-032 NA NA NA NA LTS-032 chr16 68867808 68867952 145 * CDH1 NA 0 NA 0.447 1 NA NA NA NA NA LTS-032 chr16 68867953 69499927 631975 * c(TMED6, VPS4A, HAS3, NIP7, CHTF8, PDF, SNTB2, TERF2, TANGO6, CYB5B, COG8, UTP4, CDH1) 0.099389185566216 4 0.0289640581871164 0.593109181028496 973 0.157810594433522 2 2 0 -7.38506725247741 LTS-032 chr16 69499928 69874138 374211 * c(MIR1538, NFAT5, WWP2, NQO1, NOB1, CYB5B) NA 0 NA 0.61765747989057 312 0.120283754299387 2 NA NA -5.78647498104235 LTS-032 chr16 69874139 69985153 111015 * c(WWP2, CLEC18C, CLEC18A, MIR140) 0.448 1 NA 0.672566939992225 137 0.148418277805584 2 2 0 -5.7711936385342 LTS-032 chr16 69985154 70694000 708847 * c(SNORD111B, MIR1972-1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, PDXDC2P, CLEC18C, CLEC18A, PDPR, DDX19A, ST3GAL2, SNORD111) 0.287438490064995 12 0.185293542709121 0.658119094043342 1151 0.172731841222631 2 1 1 -7.09473641900578 LTS-032 chr16 70694001 70874094 180094 * c(VAC14-AS1, IL34, HYDIN, VAC14, MTSS1L) NA 0 NA 0.680150186324715 289 0.184567492635498 2 NA NA -5.77528413264494 LTS-032 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.912 1 NA NA NA NA NA LTS-032 chr16 70883627 70884524 898 * HYDIN 0.391 1 NA 0.923114091396163 11 0.136503812800562 3 3 0 -5.76441130582066 LTS-032 chr16 70884525 71167220 282696 * HYDIN 0.376466866738657 85 0.0414259083467453 0.939284429950258 536 0.248374135306824 3 2 1 -6.98698933432888 LTS-032 chr16 71167221 71196616 29396 * HYDIN NA 0 NA 0.820907573608792 15 0.067633465934297 3 NA NA -5.81152241249921 LTS-032 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.7 1 NA NA NA NA NA LTS-032 chr16 71209484 71318577 109094 * c(HYDIN, CMTR2) 0.086 1 NA 0.654017977215848 79 0.153076633410206 2 2 0 -5.76546388592803 LTS-032 chr16 71318578 74340431 3021854 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, PHLPP2, HCCAT5, HP, HPR, ATXN1L, PKD1L3, ZFHX3, TXNL4B, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.0736612847632695 37 0.0285386308966189 0.657113748237063 2071 0.190297761740463 2 2 0 -6.77168289248399 LTS-032 chr16 74340432 74366531 26100 * LOC283922 0.401 1 NA 0.648403564016152 75 0.147533935018293 2 2 0 -5.76449408868842 LTS-032 chr16 74366532 74750351 383820 * c(MLKL, GLG1, LOC283922, CLEC18B, RFWD3, FA2H) 0.236065507252402 9 0.166018656916759 0.700515108708401 413 0.293923805255374 3 2 1 -7.18638256502823 LTS-032 chr16 74750352 74750396 45 * FA2H 0.106 1 NA 0.463217076928235 3 0.307150343208881 1 1 0 -5.76442580017918 LTS-032 chr16 74750397 90050880 15300484 * c(VPS9D1-AS1, LOC100129617, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, ZNF778, ACSF3, NA NA NA NA NA NA NA NA NA LTS-032 FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GCSH, CPNE7, IL17C, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, CENPN, CMC2, JPH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, CA5A, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.0693782056507286 339 0.037910385923148 0.660844897666896 10127 0.313688452544989 2 2 0 -6.81498941364162 LTS-032 NA NA NA NA LTS-032 chr16 90050881 90161242 110362 * c(URAHP, PRDM7, AFG3L1P, GAS8, GAS8-AS1, DBNDD1) NA 0 NA 0.60373544773571 258 0.144592745689379 2 NA NA -5.7760089857579 LTS-032 chr17 6004 6115 112 * DOC2B 0.099 1 NA 0.260768089007031 3 0.177823882910405 1 1 0 -5.76465068612919 LTS-032 chr17 6116 264411 258296 * c(LOC100506388, C17orf97, DOC2B, RPH3AL) 0.109415810221803 9 0.0451795799498451 0.365971400744804 146 0.114217223369826 1 1 0 -6.78564909070399 LTS-032 chr17 264412 289767 25356 * C17orf97 NA 0 NA 0.866 1 NA NA NA NA NA LTS-032 chr17 289768 290370 603 * RFLNB 0.0860645329213627 2 0.00565685424949237 0.761812527772693 14 0.23249852888581 13 12 1 -6.77834990971853 LTS-032 chr17 290371 290460 90 * RFLNB 0.058 1 NA 0.196 1 NA NA NA NA NA LTS-032 chr17 290461 1303502 1013042 * c(DBIL5P, MIR3183, TUSC5, ABR, TIMM22, RFLNB, GEMIN4, GLOD4, MRM3, VPS53, NXN, BHLHA9, YWHAE, FAM57A) 0.044326235735961 33 0.0299958330439413 0.935119019027825 858 0.268080494043627 3 3 0 -6.750707253258 LTS-032 chr17 1303503 1323994 20492 * YWHAE NA 0 NA 1.288 1 NA NA NA NA NA LTS-032 chr17 1323995 3403137 2079143 * c(MIR1253, PITPNA-AS1, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, OR1A2, LOC284009, HIC1, OR3A4P, MIR132, MIR212, MIR22, MNT, ASPA, MYO1C, OR1D2, OR3A1, OR3A2, PAFAH1B1, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, OR1D4, SNORD91A, SNORD91B, TLCD2, METTL16, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3, SPATA22, MIR22HG, SCARF1, SGSM2) 0.0283110729523921 81 0.0143678310089322 1.47139269698406 2847 0.509607447722884 5 5 0 -6.74846527472139 LTS-032 chr17 3403138 3403296 159 * SPATA22 NA 0 NA 1.146 1 NA NA NA NA NA LTS-032 chr17 3403297 5338361 1935065 * c(C17orf107, LOC100130950, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, ZFP3, GGT6, SPNS2, CTNS, TRPV3, SPNS3, ENO3, CAMTA2, ZZEF1, SHPK, ALOX15, RNF167, PELP1, GP1BA, VMO1, TAX1BP3, SMTNL2, ITGAE, GLTPD2, INCA1, SCIMP, MED11, ARRB2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, ANKFY1, PFN1, PLD2, SLC52A1, NCBP3, PSMB6, CXCL16, C1QBP, UBE2G1, TRPV1, ZNF232, EMC6, GSG2, SLC25A11, ZMYND15, CAMKK1, NA NA NA NA NA NA NA NA NA LTS-032 RPAIN, ZNF594, SPATA22, TM4SF5, USP6, RABEP1, SPAG7) 0.0369580032121334 152 0.0163578565282459 1.2135415905233 4405 0.384267569460535 4 4 0 -6.73648576829374 LTS-032 NA NA NA NA LTS-032 chr17 5338362 5341541 3180 * C1QBP NA 0 NA 2.357 1 NA NA NA NA NA LTS-032 chr17 5341542 5487316 145775 * c(NLRP1, DERL2, DHX33, C1QBP, LOC728392, MIS12) 0.0212839030657741 22 0.00995052697162251 1.90158567891984 443 0.655449485450001 7 7 0 -6.73969259288947 LTS-032 chr17 5487317 5983964 496648 * c(NLRP1, WSCD1, LOC339166) NA 0 NA 1.695 1 NA NA NA NA NA LTS-032 chr17 5983965 6942108 958144 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, MIR4520-1, MIR4520-2, ALOX15P1, FBXO39, SLC16A13, WSCD1, AIPL1, ALOX12, ALOX12P2, BCL6B, SLC13A5, MED31, FAM64A, XAF1, MIR497, PITPNM3, TEKT1, TXNDC17, KIAA0753) 0.0290284110225318 32 0.00749455447469651 1.52727727946763 1108 0.486118405843594 5 5 0 -6.76357775746348 LTS-032 chr17 6942109 6947267 5159 * c(SLC16A11, SLC16A13) NA 0 NA 1.53492464652869 59 0.302831011083919 5 NA NA -5.76447539063551 LTS-032 chr17 6947268 6978412 31145 * CLEC10A NA 0 NA 0.67 1 NA NA NA NA NA LTS-032 chr17 6978413 6979179 767 * CLEC10A 0.067 1 NA 0.77131371989436 17 0.588196870803925 3 3 0 -5.76445002597334 LTS-032 chr17 6979180 7569698 590519 * c(TMEM256-PLSCR3, SENP3-EIF4A1, CLEC10A, SAT2, GABARAP, CHRNB1, CLDN7, KCTD11, DLG4, DVL2, EIF5A, C17orf74, FGF11, CTDNEP1, ELP5, TMEM256, SENP3, SNORA67, TMEM102, GPS2, TMEM95, ACADVL, SPEM1, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, ATP1B2, YBX2, POLR2A, PLSCR3, NLGN2, ZBTB4, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, TP53, PHF23, NEURL4, TNK1, TNFSF13, TNFSF12, FXR2, MPDU1, CD68, ACAP1) 0.0671989287270482 73 0.024340658495862 0.662913326642891 2599 0.167296881898189 2 2 0 -6.75493851524366 LTS-032 chr17 7569699 7623073 53375 * c(DNAH2, EFNB3, WRAP53, TP53) NA 0 NA 0.644245781896932 261 0.141354549918947 2 NA NA -5.76444073632736 LTS-032 chr17 7623074 7673922 50849 * c(RPL29P2, DNAH2) 0.161 1 NA 0.392761313817519 129 0.0807682775352288 1 1 0 -5.78829729174227 LTS-032 chr17 7673923 12914917 5240995 * c(MIR744, LOC100128288, LINC00675, MIR4314, NA, MAGOH2P, MIR4521, TMEM220-AS1, CHD3, CNTROB, CYB5D1, USP43, KRBA2, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, MFSD6L, DNAH9, DHRS7C, ARHGEF15, KDM6B, PIK3R5, ALOX12B, ALOX15B, LOC284023, LINC00324, LINC00670, RANGRF, GUCY2D, SPDYE4, TMEM220, SHISA6, SLC25A35, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, PER1, PFAS, BORCS6, ADPRM, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, NA NA NA NA NA NA NA NA NA LTS-032 SCO1, MAP2K4, RNF222, PIRT, SCARNA21, VAMP2, ZNF18, CTC1, NDEL1, TMEM107, NAA38, HES7, GAS7, MYH13, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, NTN1, STX8, ARHGAP44) 0.117165210930834 146 0.0596905039253052 0.388204222980648 6082 0.121539823336456 1 1 0 -7.4197337207263 LTS-032 NA NA NA NA LTS-032 chr17 12914918 12914920 3 * ELAC2 0.101 1 NA 0.072 1 NA NA NA NA NA LTS-032 chr17 12914921 16649035 3734115 * c(MIR1288, TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CDRT15, USP32P1, TVP23C, CENPV, SNORD49A, CDRT4, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, PMP22, TTC19, ZNF286A, ZNF287, ZNF624, ELAC2, CDRT15P2, TEKT3, SNORD49B, SNORD65, UBB, MGC12916, CDRT7, CDRT15P1, PIGL, NCOR1, CCDC144A, HS3ST3B1, HS3ST3A1) 0.125660557572347 67 0.079349991029842 0.371515320617717 2143 0.187925951299156 1 1 0 -6.74997443979152 LTS-032 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 0.798 1 NA NA NA NA NA LTS-032 chr17 16664882 16664991 110 * c(USP32P1, CCDC144A) 0.322 1 NA 0.791025963168054 3 0.0337194306001748 3 3 0 -5.76567070863111 LTS-032 chr17 16664992 16843102 178111 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) NA 0 NA 0.925908126256475 50 0.430263194724687 3 NA NA -5.76446103111849 LTS-032 chr17 16843103 16855878 12776 * TNFRSF13B 0.075 1 NA 0.707380652339347 19 0.167557234700817 2 2 0 -5.76702344744464 LTS-032 chr17 16855879 18259115 1403237 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.0698423676914201 54 0.0271103034556812 0.659578302176692 2636 0.218042562398523 2 2 0 -6.74680789965341 LTS-032 chr17 18259116 18314964 55849 * c(EVPLL, SHMT1) 0.386 1 NA 0.747124689720034 43 0.23678831353417 2 2 0 -5.77828074444449 LTS-032 chr17 18314965 18380217 65253 * c(KRT17P5, LGALS9C, KRT16P1) 0.347 1 NA 0.915312379817285 24 0.205127885172549 3 3 0 -5.76441431541324 LTS-032 chr17 18380218 18387136 6919 * LGALS9C NA 0 NA 0.308 1 NA NA NA NA NA LTS-032 chr17 18387137 18456685 69549 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.091 1 NA 0.253509455747679 56 0.205287087542515 1 1 0 -5.89433401496056 LTS-032 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.949 1 NA NA NA NA NA LTS-032 chr17 18483256 18671961 188706 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, ZNF286B) 0.288639994731891 7 0.15129819185021 0.59585637617269 364 0.318826856978398 3 2 1 -7.02753848978557 LTS-032 chr17 18671962 18678548 6587 * FBXW10 0.106 1 NA 0.566059967053104 17 0.178895200178928 2 2 0 -5.76633912526924 LTS-032 chr17 18678549 18786021 107473 * c(FBXW10, TVP23B, PRPSAP2) 0.0945914919066324 8 0.0350894265718729 0.50753685123761 107 0.257182132482423 2 2 0 -7.06605881286756 LTS-032 chr17 18786022 18793061 7040 * PRPSAP2 0.113 1 NA 0.641311042468481 2 0.494267640049397 2 2 0 -5.7644101353163 LTS-032 chr17 18793062 20924523 2131462 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.0787171165036012 36 0.0364605026565495 0.659341643551548 1981 0.18932166620566 2 2 0 -6.79368192639075 LTS-032 chr17 20924524 20946393 21870 * USP22 0.25 1 NA 0.509660611700112 18 0.133532657384759 2 2 0 -5.80307614776145 LTS-032 chr17 20946394 21194690 248297 * c(USP22, NATD1, DHRS7B, MAP2K3, TMEM11) NA 0 NA 0.619142243623025 98 0.150102541569032 2 NA NA -5.77267347046233 LTS-032 chr17 21194691 21194769 79 * MAP2K3 NA 0 NA 1.09 1 NA NA NA NA NA LTS-032 chr17 21194770 21318543 123774 * c(KCNJ12, MAP2K3) 0.406930096112846 26 0.0457050914517779 0.830152197417359 155 0.230706896604246 2 1 1 -7.02351255620672 LTS-032 chr17 21318544 21318552 9 * KCNJ12 0.44 1 NA 1.538 1 NA NA NA NA NA LTS-032 chr17 21318553 21318555 3 * KCNJ12 0.23 1 NA 2.048 1 NA NA NA NA NA LTS-032 chr17 21318556 21319908 1353 * KCNJ12 0.325413359375319 26 0.069610786078463 1.38016721444367 63 0.841545971787548 19 13 6 -6.74064173184589 LTS-032 chr17 21319909 21319912 4 * KCNJ12 NA 0 NA 0.794 1 NA NA NA NA NA LTS-032 chr17 21319913 22066835 746923 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.326975938320344 17 0.127064510017087 0.734322525321424 224 0.334027960253482 3 2 1 -6.94346796045515 LTS-032 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.854 1 NA NA NA NA NA LTS-032 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.085 1 NA 0.61998585328109 17 0.192663223390088 2 2 0 -5.76458872590735 LTS-032 chr17 25630389 34433730 8803342 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, RFFL, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, TMEM199, PROCA1, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, LYRM9, RDM1, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, GAS2L2, NA NA NA NA NA NA NA NA NA LTS-032 HEATR9, TMEM98, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LGALS9, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, TBC1D3P5, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 RAD51D, RPL23A, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, SNORD7, MIR632, TNFAIP1, VTN, ZNF207, MMP28, TEFM, ATAD5, TAF15, RAB34, NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, ZNF830, SLFN11, RASL10B, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100 NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ) 0.0714089739839282 141 0.036389652213881 0.635688414753063 10216 0.200398463348432 2 2 0 -6.74450855481769 LTS-032 NA NA NA NA LTS-032 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.075 1 NA NA NA NA NA LTS-032 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.0688179332052685 39 0.00448313679465262 0 NA NA -18.6451047386251 LTS-032 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.604 1 NA NA NA NA NA LTS-032 chr17 34842415 36234012 1391598 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.0682871471281542 13 0.0391006262655597 0.630561906797997 1543 0.200523339169516 2 2 0 -6.74031175631826 LTS-032 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.287 1 NA NA NA NA NA LTS-032 chr17 36351756 36398345 46590 * LOC440434 0.0264109409468199 2 0.00989949493661167 0.351168178525359 65 0.207334228268124 5 5 0 -7.94142339360929 LTS-032 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.538 1 NA NA NA NA NA LTS-032 chr17 36421727 41026386 4604660 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, RAMP2-AS1, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, SNORD124, PSME3, EIF1, RAMP2, P3H4, STARD3, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, KRT28, KRT24, ZNF385C, ERBB2, EZH1, CASC3, IKZF3, KCNH4, GAST, KRT23, KAT2A, TUBG2, NA NA NA NA NA NA NA NA NA LTS-032 CCR10, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, MLLT6, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, FBXO47, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 KLHL11, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, SNORA21, WNK4, KRTAP4-11, SMARCE1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, PCGF2, CACNB1, DHX58, PLEKHH3, COASY, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PPP1R1B, MIEN1, MRPL45, VPS25, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, AOC4P, PGAP3, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.0629844508277762 153 0.036062826203454 0.655215412564393 10314 0.189760545042743 2 2 0 -6.79041936992818 LTS-032 NA NA NA NA LTS-032 chr17 41026387 41031509 5123 * LINC00671 NA 0 NA 0.405 1 NA NA NA NA NA LTS-032 chr17 41031510 41131237 99728 * c(PTGES3L, PTGES3L-AARSD1, G6PC, LINC00671, AARSD1) NA 0 NA 0.378081443648397 160 0.0918460018199729 1 NA NA -5.77236842754052 LTS-032 chr17 41131238 41424101 292864 * c(LINC00854, PTGES3L, PTGES3L-AARSD1, NBR2, VAT1, TMEM106A, RUNDC1, IFI35, NBR1, RPL27, BRCA1, RND2) 0.0543726492679071 23 0.0262375134992725 0.661376089979659 587 0.238485078176283 2 2 0 -6.9427877809965 LTS-032 chr17 41424102 41465867 41766 * LINC00910 0.402 1 NA 0.616946845533089 23 0.162149896493357 2 2 0 -5.76585406418845 LTS-032 chr17 41465868 41891473 425606 * c(LINC00910, MIR2117, DHX8, DUSP3, ETV4, C17orf105, ARL4D, MEOX1, MPP3, SOST) 0.31617482148647 9 0.159489898670034 0.645766341530654 391 0.246870639744888 2 1 1 -7.04251331371716 LTS-032 chr17 41891474 41893360 1887 * MPP3 0.047 1 NA 0.703883034086035 15 0.305887576609135 2 2 0 -5.76451451223536 LTS-032 chr17 41893361 44102573 2209213 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, GPATCH8, FAM215A, FZD2, GFAP, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MPP2, MPP3, NMT1, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2) 0.0690828571443647 108 0.0265590947514913 0.679380103875794 3555 0.298112151815397 2 2 0 -6.78268409732781 LTS-032 chr17 44102574 44271063 168490 * character(0) 0.0598510816933324 21 0.0302076149339864 0.864529734054319 187 0.333837094697551 3 3 0 -6.81264466071819 LTS-032 chr17 44271064 44271152 89 * character(0) 0.133 1 NA 0.196 1 NA NA NA NA NA LTS-032 chr17 44271153 44364335 93183 * character(0) 0.103338770830973 9 0.0300624350311148 0.380971078716743 46 0.133912685158564 1 1 0 -6.98102095366294 LTS-032 chr17 44364336 44408491 44156 * character(0) NA 0 NA 1.149 1 NA NA NA NA NA LTS-032 chr17 44408492 45197296 788805 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.0652423764571705 6 0.0344944439970652 0.657586614310998 288 0.342725049183008 2 2 0 -6.74714322193075 LTS-032 chr17 45197297 45214473 17177 * CDC27 0.477 1 NA 0.583378125575284 43 0.0927201459805439 2 2 0 -5.7751809840793 LTS-032 chr17 45214474 45249372 34899 * CDC27 0.350784225964363 16 0.0937743523926807 0.559655831686587 79 0.176637539930844 3 2 1 -6.89273922478143 LTS-032 chr17 45249373 45266655 17283 * CDC27 0.163 1 NA 0.457589329101672 22 0.217176195748982 1 1 0 -5.77545830878994 LTS-032 chr17 45266656 73622227 28355572 * c(SNORA38B, CD300LD, LOC100287042, MIR1203, TOM1L1, MIR3185, LINC00674, LINC00673, MIR3614, MIR3678, MIR3615, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR4524A, MIR3064, MIR5047, MIR4524B, HOXB-AS1, TOB1, SLC35B1, DCAF7, CALCOCO2, ABCA10, ABCA9, ABCA8, ATP5H, HOXB13, APPBP2, IGF2BP1, GNA13, CD300C, CBX1, CHAD, TLK2, KAT7, POLG2, NXPH3, SNF8, CD300A, DDX42, OSBPL7, FTSJ3, CLTC, HSF5, OR4D2, MSI2, NA NA NA NA NA NA NA NA NA LTS-032 USH1G, CD300LB, KIF19, C17orf64, WFIKKN2, FLJ40194, B4GALNT2, EFCAB13, MRPL10, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, CD300LF, C17orf77, TCAM1P, EFCAB3, LOC146880, EME1, CYB561, ANKFN1, MARCH10, TMEM92, PHOSPHO1, ACE, DDX5, DLX3, DLX4, CEP112, SAMD14, SLC39A11, AMZ2P1, ERN1, BPTF, FDXR, ZNF652, PPM1E, ARSG, GGA3, ABCA6, ABCA5, KCTD2, MMD, CDC42EP4, MTVR2, STXBP4, CACNA1G-AS1, TAC4, NOL11, TANC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 NAT9, PITPNC1, OR4D1, GH1, GH2, GIP, CACNG5, CACNG4, GNGT2, LINC00469, FADS6, HID1, TSEN54, C17orf58, MILR1, TTLL6, LOC284080, C17orf47, GDPD1, GRB2, GRIN2C, SNX11, TBX21, NT5C, CDR2L, HLF, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, RAB37, ICAM2, METTL2A, C17orf67, MRPL58, CD300E, NACA2, OTOP3, SKA2, APOH, GPR142, PRAC2, ITGA3, ITGB3, HILS1, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 KPNB1, KPNA2, YPEL2, C17orf82, BTBD17, LLGL2, TOB1-AS1, KCNJ2-AS1, LINC00511, LOC400620, LPO, CUEDC1, HOXB-AS3, MIR10A, MIR142, MIR152, MIR196A1, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, MYL4, NFE2L1, NGFR, NME1, NME2, MRPS7, UTP18, RNFT1, HN1, TUBD1, TACO1, ABI3, COPZ2, MRPL27, AMZ2, ATP5G1, PDK2, MRPS23, PTRH2, LUC7L3, PECAM1, PHB, SEPT4, SDK2, FAM20A, MBTD1, BCAS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TMEM104, RNF43, MKS1, LINC00483, C17orf80, EPN3, WIPI1, PNPO, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, PRKAR1A, PRR11, PRKCA, TEX2, GPRC5C, MAP2K6, TEX14, CA10, CCDC47, PSMC5, PSMD12, MIF4GD, INTS2, CASKIN2, PCTP, RAD51C, SCPEP1, SLC25A19, RPL38, RPS6KB1, SCN4A, HEATR6, XYLT2, SRSF1, CPSF4L, SGCA, DNAI2, WFDC21P, SMURF2, SPATA20, UBE2Z, MRPL45P2, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, SUMO2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SOX9, SP2, SSTR2, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, FLJ45513, LOC729683, CA4, MIR454, TRIM25, VEZF1, CACNG1, PRR15L, ARMC7, DHX40, NUP85, MYO15B, ACSF2, CDK5RAP3, SP6, LIMD2, KCNH6, FAM117A, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, SPOP, MYCBPAP, PRAC1, KIF2B, USP32, PPP1R9B, FAM104A, PPM1D, MGC16275, DGKE, SKAP1, ABCC3, RGS9, CACNA1G, SPAG9, LRRC46, SCRN2, CEP95, MTMR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SLC16A6, SLC16A5, ANKRD40, STRADA, PRR29, NOG, TSPOAP1, OTOP2, SLC9A3R1, COG1, TTYH2, TBX4, NPEPPS, CD79B, TBKBP1, TMEM94, MRC2, HELZ, CDC27, MED13) 0.0752333001449718 380 0.0447813078478613 0.641836554214788 21320 0.215604693901496 2 2 0 -6.74120537553788 LTS-032 NA NA NA NA LTS-032 chr17 73622228 74300931 678704 * c(SMIM6, RNF157-AS1, MIR4738, CDK3, RNF157, TRIM65, UNC13D, EVPL, FOXJ1, EXOC7, WBP2, GALK1, UBALD2, SAP30BP, H3F3B, ZACN, ITGB4, ACOX1, SMIM5, MRPL38, SRP68, MYO15B, QRICH2, FBF1, UNK, GALR2, TRIM47, RECQL5) 0.068656620545426 34 0.028039140583024 0.60850458439774 2039 0.141186352210215 2 2 0 -6.79072738595072 LTS-032 chr17 74300932 74381555 80624 * c(PRPSAP1, QRICH2, SPHK1) 0.267 1 NA 0.568417140784884 103 0.176652248081738 2 2 0 -5.78696646220234 LTS-032 chr17 74381556 74560569 179014 * c(SNHG16, CYGB, AANAT, UBE2O, SNORD1A, SNORD1B, SNORD1C, PRCD, RHBDF2, SPHK1) 0.159061206426954 12 0.14934513616777 0.587353572523553 449 0.174224712362251 2 2 0 -6.96627367956539 LTS-032 chr17 74560570 74561213 644 * SNHG16 0.102 1 NA 0.511644386912363 17 0.251381915910948 2 2 0 -5.76472216667998 LTS-032 chr17 74561214 74625715 64502 * c(SNHG16, ST6GALNAC2, ST6GALNAC1) 0.0604021276376845 2 0.00636396103067893 0.587631036954265 92 0.130896716194712 2 2 0 -7.88455466419836 LTS-032 chr17 74625716 74625800 85 * ST6GALNAC1 NA 0 NA 0.638 1 NA NA NA NA NA LTS-032 chr17 74625801 80363278 5737478 * c(LOC100130370, TNRC6C-AS1, C17orf99, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, ALYREF, BAIAP2, SEPT9, TMC6, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, SLC25A10, NOTUM, TMC8, CENPX, LRRC45, FASN, CEP131, JMJD6, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, TMEM235, CCDC57, NA NA NA NA NA NA NA NA NA LTS-032 SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, ST6GALNAC1, CBX8, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SEC14L1, SECTM1, DUS1L, SRSF2, SGSH, ENGASE, SNHG20, SCARNA16, MIR636, TIMP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TK1, ACTG1, MIR657, ASPSCR1, CARD14, MFSD11, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SOCS3, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, PGS1, AATK, EIF4A3) 0.0659421340555552 218 0.0305317440862381 0.660404087886742 7690 0.274901924541116 2 2 0 -6.78229802517352 LTS-032 NA NA NA NA LTS-032 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.33426068970368 39 0.477991421387851 5 NA NA -5.76497495972085 LTS-032 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.582 1 NA NA NA NA NA LTS-032 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.0756185352796439 22 0.0199154055098905 0.656380431731455 874 0.171933127289366 2 2 0 -6.78669805113991 LTS-032 chr17 81050983 81083625 32643 * METRNL NA 0 NA 0.685618952673863 13 0.0745648917180403 2 NA NA -5.77999942885752 LTS-032 chr18 116845 121139 4295 * ROCK1P1 0.14 1 NA 0.470322368208336 25 0.138504247828963 1 1 0 -5.7729151377546 LTS-032 chr18 121140 3997393 3876254 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.0765285049604009 48 0.0300506590598123 0.604752982789476 1946 0.21004765111791 2 2 0 -6.93826807913474 LTS-032 chr18 5132707 5196981 64275 * AKAIN1 0.187 1 NA 3.40478307742348 15 1.0187650694182 12 12 0 -5.76441022038565 LTS-032 chr18 5196982 5232843 35862 * AKAIN1 0.257 1 NA 3.25033370757137 5 1.54724862255553 11 11 0 -5.7644243061413 LTS-032 chr18 5232844 5289353 56510 * c(LINC00526, LINC00667, ZBTB14) 0.198 1 NA 2.40595634204186 19 0.90468393886471 8 8 0 -5.76450020579338 LTS-032 chr18 5289354 5289452 99 * ZBTB14 NA 0 NA 2.006 1 NA NA NA NA NA LTS-032 chr18 5289453 8387195 3097743 * c(LINC01387, LOC100192426, MIR4317, MIR3976, EPB41L3, LAMA1, LRRC30, LINC00668, PTPRM, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.346446187622585 49 0.0469209967069412 1.89034545526258 1274 0.683437057355947 6 4 2 -6.7652773922022 LTS-032 chr18 8387196 8638338 251143 * c(RAB12, PTPRM) NA 0 NA 1.81867444769439 63 0.311682671250109 6 NA NA -5.76708301465174 LTS-032 chr18 8638339 8705612 67274 * RAB12 NA 0 NA 0.857 1 NA NA NA NA NA LTS-032 chr18 8705613 8809445 103833 * MTCL1 0.061 1 NA 0.641057792193001 95 0.144642248555494 2 2 0 -5.76441117500185 LTS-032 chr18 8809446 13666156 4856711 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ANKRD12, MTCL1, GNAL, ANKRD62, IMPA2, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, NAPG, VAPA, PPP4R1) 0.0772555349849233 71 0.0320912682357973 0.664700509674102 2799 0.901251686401634 2 2 0 -6.76769304401881 LTS-032 chr18 13666157 13760290 94134 * c(FAM210A, RNMT) 0.075 1 NA 0.590944564245367 85 0.123431352903352 2 2 0 -5.7892271895187 LTS-032 chr18 13760291 14866503 1106213 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.184752541618669 9 0.163361647205756 0.651179406572211 331 0.242269853734935 2 2 0 -7.01771658295202 LTS-032 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.875496848742706 33 0.36577854390576 3 NA NA -5.76576979603399 LTS-032 chr18 18529727 19034556 504830 * c(ROCK1, GREB1L) 0.084 1 NA 0.631116212952565 271 0.13663948819246 2 2 0 -5.76867565403709 LTS-032 chr18 19034557 77917450 58882894 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, PARD6G-AS1, LOC100131655, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, ESCO1, OSBPL1A, NA NA NA NA NA NA NA NA NA LTS-032 HAUS1, ALPK2, LOXHD1, INO80C, TTC39C, FAM69C, PSMA8, STARD6, C18orf25, CCBE1, CBLN2, SLC25A52, DSG4, AQP4-AS1, ANKRD29, CYB5A, C18orf54, TCEB3C, DCC, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, ZNF521, TPGS2, SETBP1, KCNG2, CABYR, GATA6, SNORD58B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SNORD58A, SALL3, CDH20, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, C18orf8, RAX, CXXC1, LOC339298, CPLX4, AQP4, CCDC178, ATP9B, OACYLP, LAMA3, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR1-2, MIR122, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, NPC1, RNF165, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, ZNF407, CNDP2, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, RBBP8, HRH4, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SNRPD1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, ZNF236, CCDC102B, RBFA, GREB1L, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, PARD6G, CNDP1, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, CABLES1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.075083763951894 379 0.0544898261510316 0.658985173576323 20339 0.295913827500065 2 2 0 -7.01854641607243 LTS-032 NA NA NA NA LTS-032 chr18 77917451 78005362 87912 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.625103341495982 57 0.121797697835365 2 NA NA -5.76677481610249 LTS-032 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.065 1 NA 0.711493311163803 17 0.188984418125193 2 2 0 -5.79589307444715 LTS-032 chr19 282754 8203127 7920374 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, TGFBR3L, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, NA NA NA NA NA NA NA NA NA LTS-032 MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, GADD45B, NFIC, NRTN, OAZ1, FLJ25758, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STK11, STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 FSD1, ZNF557, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.0729818153587286 376 0.0458731682727048 0.670008784411397 13947 0.241418817640388 2 2 0 -6.88647568906528 LTS-032 NA NA NA NA LTS-032 chr19 8203128 8619389 416262 * c(RAB11B-AS1, MIR4999, KANK3, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, RPS28, CERS4, PRAM1, ZNF414, FBN3, RAB11B) 0 1 NA 0.638707200184805 639 0.16695282809828 2 2 0 -5.76457308868008 LTS-032 chr19 8619390 9000185 380796 * c(ZNF558, ACTL9, OR2Z1, MYO1F, ADAMTS10, MBD3L1, MUC16) 0.299 1 NA 0.661416378005372 379 0.151770122809848 2 2 0 -5.77372773870941 LTS-032 chr19 9000186 9021118 20933 * MUC16 0.329797716497402 10 0.0756028365135124 0.685093702764765 160 0.242689229806662 3 2 1 -6.7896842148659 LTS-032 chr19 9021119 9025654 4536 * MUC16 0.202 1 NA 0.715183266265056 17 0.1851712839826 2 2 0 -5.76534984852313 LTS-032 chr19 9025655 9678854 653200 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, OR7D2, OR7E24, ZNF699, OR7G2, OR7G3, ZNF317, ZNF121, ZNF177, ZNF426, ZNF559, MUC16) NA 0 NA 0.633516327099517 1365 0.125449254662024 2 NA NA -5.76825224139778 LTS-032 chr19 9678855 9717980 39126 * ZNF121 NA 0 NA 3.224 1 NA NA NA NA NA LTS-032 chr19 9717981 11598657 1880677 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, ILF3-AS1, SPC24, ZNF846, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, PIN1, S1PR5, ZNF562, FBXL12, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, NA NA NA NA NA NA NA NA NA LTS-032 DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.194782627088283 57 0.045880326785725 2.89482201299197 4101 0.919289956846901 11 9 2 -6.74481181552797 LTS-032 NA NA NA NA LTS-032 chr19 11598658 11688159 89502 * c(ZNF653, CNN1, ECSIT, ACP5, ELOF1) NA 0 NA 2.72369040499984 143 0.536419032483302 10 NA NA -5.76478170675372 LTS-032 chr19 11688160 11708329 20170 * c(ZNF627, ACP5) NA 0 NA 0.675 1 NA NA NA NA NA LTS-032 chr19 11708330 11708361 32 * ZNF627 0.023 1 NA 0.011 1 NA NA NA NA NA LTS-032 chr19 11708362 12503504 795143 * c(ZNF625-ZNF20, ZNF441, ZNF491, ZNF440, ZNF563, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ZNF823, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.0753292349473037 26 0.0310423036417179 0.624687070325074 1331 0.270649563486348 2 2 0 -6.75490215571037 LTS-032 chr19 12503505 12511866 8362 * ZNF799 NA 0 NA 0.558 1 NA NA NA NA NA LTS-032 chr19 12511867 12624675 112809 * c(ZNF443, ZNF709, ZNF799) 0.167448149273911 15 0.100678034678209 0.495883739626297 171 0.174576591723258 1 1 0 -7.04797624036724 LTS-032 chr19 12624676 12636178 11503 * ZNF709 NA 0 NA 0.306 1 NA NA NA NA NA LTS-032 chr19 12636179 12940857 304679 * c(RNASEH2A, ZNF791, ZNF564, ZNF709, DHPS, SNORD41, HOOK2, TNPO2, JUNB, MAN2B1, ASNA1, WDR83OS, BEST2, ZNF490, PRDX2, C19orf43, RTBDN, FBXW9, WDR83) 0.139244735717209 11 0.0451083543965376 0.358454485513302 982 0.09063020519797 1 1 0 -6.81993724526461 LTS-032 chr19 12940858 12944735 3878 * RTBDN NA 0 NA 0.56 1 NA NA NA NA NA LTS-032 chr19 12944736 14951898 2007163 * c(LOC100507373, DDX39A, KLF1, GIPC1, NACC1, MISP3, RLN3, DNASE2, DAND5, FARSA, ADGRL1, MAST1, SYCE2, GCDH, OR7A5, OR7C1, LOC284454, C19orf53, ADGRE2, DNAJB1, NANOS3, PALM3, CLEC17A, OR7A10, LYL1, MIR181C, NDUFB7, NFIX, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RAD23A, RFX1, C19orf67, ZSWIM4, MIR639, CACNA1A, C19orf57, PODNL1, CALR, CCDC130, RTBDN, MRI1, ZNF333, ADGRE3, STX10, SAMD1, DCAF15, NA NA NA NA NA NA NA NA NA LTS-032 GADD45GIP1, IL27RA, TECR, IER2, ADGRE5) 0.0830836655737247 47 0.0594182715149493 0.658211350508878 3014 0.309716515375339 2 2 0 -6.770125174565 LTS-032 NA NA NA NA LTS-032 chr19 14951899 14952705 807 * OR7A10 NA 0 NA 0.736061613985998 11 0.0957716033070346 2 NA NA -5.76540828789003 LTS-032 chr19 14952706 14974559 21854 * character(0) NA 0 NA 3.499 1 NA NA NA NA NA LTS-032 chr19 14974560 14974930 371 * character(0) 0.218 1 NA 3.14438688151528 5 0.292359367901903 11 11 0 -5.7644102467483 LTS-032 chr19 14974931 15383939 409009 * c(ILVBL, OR1I1, CCDC105, BRD4, CASP14, OR7A17, OR7C2, NOTCH3, SLC1A6, EPHX3, SYDE1) 0.194413048910272 26 0.0476046701005754 3.29762866985961 724 1.21725206836477 11 9 2 -6.7365800176301 LTS-032 chr19 15383940 15465746 81807 * c(AKAP8, BRD4) NA 0 NA 2.713 1 NA NA NA NA NA LTS-032 chr19 15465747 15550532 84786 * c(AKAP8, AKAP8L, WIZ) 0.211247536010111 5 0.0586873069751884 2.60596884438905 261 0.624004211451513 10 8 2 -6.73458962037794 LTS-032 chr19 15550533 15590661 40129 * c(MIR1470, PGLYRP2, WIZ, RASAL3) NA 0 NA 2.79251209967478 167 0.559806587888185 10 NA NA -5.76443985472652 LTS-032 chr19 15590662 15636136 45475 * CYP4F22 NA 0 NA 0.631 1 NA NA NA NA NA LTS-032 chr19 15636137 15726560 90424 * c(CYP4F8, CYP4F22) 0.059 1 NA 0.651663299587758 49 0.133962830538871 2 2 0 -5.76516639795775 LTS-032 chr19 15726561 16275655 549095 * c(CYP4F8, CIB3, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, RAB8A, CYP4F11, UCA1, CYP4F12, TPM4, HSH2D, CYP4F2) 0.0761709859974615 29 0.0326547094499566 0.672179580618645 605 0.302522412618109 2 2 0 -6.76192982986223 LTS-032 chr19 16275656 16284307 8652 * CIB3 NA 0 NA 0.65169823094592 19 0.110835318541778 2 NA NA -5.76451656322919 LTS-032 chr19 16284308 16296262 11955 * FAM32A NA 0 NA 2.031 1 NA NA NA NA NA LTS-032 chr19 16296263 16301312 5050 * FAM32A 0.205 1 NA 2.35891814961247 13 1.03995260000464 8 8 0 -5.76441215928297 LTS-032 chr19 16301313 16799182 497870 * c(KLF2, CHERP, CALR3, FAM32A, EPS15L1, TMEM38A, SMIM7, SLC35E1, C19orf44, AP1M1, MED26) 0.203723952434787 24 0.0519821597044239 2.72730517995146 711 0.716719366864695 10 8 2 -6.74152781006334 LTS-032 chr19 16799183 16841909 42727 * c(NWD1, TMEM38A) NA 0 NA 2.445 1 NA NA NA NA NA LTS-032 chr19 16841910 17886940 1045031 * c(TMEM221, NXNL1, ANKLE1, FAM129C, NR2F6, UNC13A, FCHO1, SIN3B, PGLS, CPAMD8, NWD1, BABAM1, SLC27A1, MYO9B, MAP1S, USE1, ANO8, MRPL34, BST2, DDA1, ABHD8, OCEL1, COLGALT1, PLVAP, USHBP1, GTPBP3, F2RL3, HAUS8, MVB12A) 0.248764229819973 59 0.0464243255327302 2.36797479045066 2275 0.781504889655282 8 6 2 -6.76774251092857 LTS-032 chr19 17886941 17919239 32299 * c(B3GNT3, FCHO1) NA 0 NA 2.6740579482927 77 0.638434393961531 9 NA NA -5.76448189463339 LTS-032 chr19 17919240 17922377 3138 * B3GNT3 NA 0 NA 1.243 1 NA NA NA NA NA LTS-032 chr19 17922378 17922795 418 * B3GNT3 0.499 1 NA 1.21088892602058 9 0.490034437565361 4 4 0 -5.76441036357847 LTS-032 chr19 17922796 24309080 6386285 * c(ZNF730, ZNF737, MEF2B, ZNF729, MIR1270, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, ZNF257, CCDC124, LRRC25, NR2C2AP, COMP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, SSBP4, ZNF431, ZNF675, ZNF626, MAST3, CRTC1, MAU2, FKBP8, TMEM59L, LSM4, GDF1, SNORA68, ARRDC2, SLC25A42, LINC00663, ZNF493, ZNF429, IL12RB1, INSL3, JAK3, JUND, YJEFN3, KCNN1, ZNF728, RPSAP58, LINC00664, NA NA NA NA NA NA NA NA NA LTS-032 HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, KLHL26, ZNF253, ATP13A1, ZNF492, SUGP1, RAB3A, UPF1, RPL18A, LOC641367, SLC5A5, ZNF826P, LOC729966, BORCS8, ZNF726, UBA52, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, KXD1, ZNF430, PBX4, KIAA1683, ELL, ZNF93, TSSK6, MPV17L2, RFXANK, ZNF486, ZNF682, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 LPAR2, CRLF1, ARMC6, ZNF101, HOMER3, GDF15, ZNF254) 0.421802372221623 89 0.12749847682801 1.21806438461739 5241 0.323928502247976 4 2 2 -6.75390400073902 LTS-032 NA NA NA NA LTS-032 chr19 24309081 24345121 36041 * c(HAVCR1P1, ZNF254) NA 0 NA 1.1514850572565 23 0.218732243773988 4 NA NA -5.76497901719866 LTS-032 chr19 28247625 29704002 1456378 * c(LINC01532, LINC00906, LINC00662, UQCRFS1) 0.417 1 NA 2.65632254320744 23 0.864098842885859 9 9 0 -5.76562300560364 LTS-032 chr19 29704003 30528847 824845 * c(POP4, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1) 0.220261349726168 3 0.134923435078319 3.17964007821613 298 0.585915326014418 10 8 2 -6.75428473529225 LTS-032 chr19 30528848 30934491 405644 * ZNF536 NA 0 NA 5.088 1 NA NA NA NA NA LTS-032 chr19 30934492 34717438 3782947 * c(THEG5, CEBPA, CEBPG, SLC7A9, WDR88, DPY19L3, ZNF507, LSM14A, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, KCTD15, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12, NA, ZNF536) 0.175898618652816 33 0.0841687405985108 4.03313294066549 1589 1.2994666455677 13 11 2 -6.76011062448388 LTS-032 chr19 34717439 35454605 737167 * c(SCGB2B3P, UBA2, LINC00904, WTIP, ZNF792, ZNF599, LSM14A, GPI, SCGB2B2, ZNF181, LOC400685, ZNF302, SCGB1B2P, PDCD2L, ZNF30, KIAA0355) 0.149877973879314 12 0.115217843735905 3.22403239861425 745 0.767912893084949 13 11 2 -6.75290218653359 LTS-032 chr19 35454606 35487125 32520 * c(ZNF792, GRAMD1A) 0.093 1 NA 3.23501875721375 17 0.450226299307621 11 11 0 -5.76452794714659 LTS-032 chr19 35487126 35757795 270670 * c(HPN-AS1, FAM187B, LGI4, HPN, LSR, FXYD1, FXYD3, FXYD7, FXYD5, GRAMD1A, SCN1B) 0.0867058608110608 34 0.0168056946464292 3.46567623205509 560 0.991504900542424 13 12 1 -6.73436830468495 LTS-032 chr19 35757796 35849813 92018 * c(MIR5196, FFAR1, FFAR3, MAG, LSR, HAMP, USF2, CD22) 0.129059537516481 4 0.0262599187609812 2.66566365783454 249 0.798936139407691 9 8 1 -6.74937589250578 LTS-032 chr19 35849814 35851141 1328 * FFAR3 NA 0 NA 2.80569857280645 32 0.763272590480644 10 NA NA -5.76441044040066 LTS-032 chr19 35851142 35863271 12130 * FFAR3 NA 0 NA 0.594147083489687 40 0.673983640808086 2 NA NA -5.76450409494977 LTS-032 chr19 35863272 35863707 436 * character(0) 0.478 1 NA 2.06537177848229 11 0.535901178135739 7 7 0 -5.76441057261151 LTS-032 chr19 35863708 36205570 341863 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR2, SBSN, KRTDAP, ATP4A, RBM42, DMKN) 0.214925398646273 7 0.142986845881844 2.8809941940143 651 1.04245451196639 10 8 2 -6.73391733747181 LTS-032 chr19 36205571 36853092 647522 * c(LOC100134317, LINC00665, HCST, TBCB, ARHGAP33, HSPB6, COX7A1, ZNF565, PROSER3, SYNE4, THAP8, U2AF1L4, CLIP3, ZBTB32, WDR62, APLP1, NPHS1, POLR2I, PSENEN, LIN37, ZFP14, PRODH2, SDHAF1, OVOL3, TYROBP, ZNF146, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ALKBH6, KMT2B) 0.228339188737061 32 0.0706831797188079 2.56035154930554 1759 0.583900986166906 9 7 2 -6.73462906748207 LTS-032 chr19 36853093 36853658 566 * ZFP14 NA 0 NA 5.272 1 NA NA NA NA NA LTS-032 chr19 36853659 37416148 562490 * c(ZNF567, ZNF345, ZFP82, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZFP14, ZNF529, LOC644189, LOC728752, ZNF382, ZNF566, ZNF461) 0.174017051586825 26 0.0650472490992864 2.96979280200364 828 0.931167722930657 12 10 2 -6.74045186460313 LTS-032 chr19 37416149 37854568 438420 * c(ZNF420, ZNF383, ZNF585A, LOC284412, HKR1, ZNF568, ZNF585B) 0.247242841461709 23 0.057817588308287 2.4090814010392 462 0.668427803174607 8 6 2 -6.76257248149204 LTS-032 chr19 37854569 37854572 4 * HKR1 NA 0 NA 2.917 1 NA NA NA NA NA LTS-032 chr19 37854573 38699049 844477 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF781, ZNF540, ZFP30, SIPA1L3, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607) 0.199200055383193 21 0.0571693391017714 2.80743794967509 1022 0.677154930057921 10 8 2 -6.75268331450984 LTS-032 chr19 38699050 38701644 2595 * character(0) NA 0 NA 2.229 1 NA NA NA NA NA LTS-032 chr19 38701645 40170053 1468409 * c(LOC100129935, MIR4530, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, SIRT2, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, NA NA NA NA NA NA NA NA NA LTS-032 YIF1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.240944312968954 109 0.0486262382171729 2.5629284127664 3244 0.902007805396301 9 7 2 -6.75345039683244 LTS-032 NA NA NA NA LTS-032 chr19 40170054 40170109 56 * LGALS17A NA 0 NA 3.264 1 NA NA NA NA NA LTS-032 chr19 40170110 40384193 214084 * c(CLC, FBL, LEUTX, LGALS17A, LGALS14, FCGBP, DYRK1B) 0.273498592643606 5 0.177613907113154 3.10862054097802 263 1.45117068459161 11 8 3 -6.73366360879865 LTS-032 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.068 1 NA NA NA NA NA LTS-032 chr19 40389650 40399881 10232 * FCGBP NA 0 NA 0.334767847677785 41 0.392594541977145 1 NA NA -5.76471962499782 LTS-032 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 5.295 1 NA NA NA NA NA LTS-032 chr19 40405935 40719607 313673 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.202827109991583 2 0.0692964645562817 2.57574047650948 581 0.725936455072599 10 8 2 -6.74219723102857 LTS-032 chr19 40719608 40719718 111 * MAP3K10 NA 0 NA 2.97 1 NA NA NA NA NA LTS-032 chr19 40719719 41703793 984075 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AKT2, CYP2G1P, PLD3, C19orf54, CYP2S1, SERTAD3, SERTAD1, MAP3K10, RAB4B, PRX, SPTBN4, BLVRB, SNRPA, MIR641, COQ8B, CNTD2, ITPKC, MIA, LTBP4, NUMBL, SHKBP1) 0.197235300387823 44 0.0611619518588125 2.83713268665805 1919 0.833780124784898 11 9 2 -6.74709815597249 LTS-032 chr19 41703794 41743897 40104 * c(CYP2S1, AXL) NA 0 NA 2.91741356907199 72 0.453988293567577 10 NA NA -5.7644778712849 LTS-032 chr19 41743898 41932063 188166 * c(HNRNPUL1, B3GNT8, AXL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.329 1 NA 2.06303802212154 377 0.384382976382032 7 7 0 -5.7647413988005 LTS-032 chr19 41932064 42192406 260343 * c(ERICH4, PCAT19, CEACAM7, CEACAM4, B3GNT8, ATP5SL, CEACAM21) 0.292775905099762 2 0.0304055915910215 1.9755196082137 228 0.540075579058998 7 5 2 -6.73712445605878 LTS-032 chr19 42192407 42744922 552516 * c(MIR4323, LOC100505622, CEACAM5, RABAC1, CEACAM3, ZNF526, LYPD4, DEDD2, GRIK5, GSK3A, CEACAM6, ATP1A3, POU2F2, RPS19, DMRTC2, ZNF574, ARHGEF1, CD79A) 0.241892857690694 2 0.0134350288425444 2.35438953507453 1014 0.605109798488553 13 10 3 -6.97419914454321 LTS-032 chr19 42744923 45731515 2986593 * c(SRRM5, LOC100289650, LOC100379224, LOC100505715, APOC4-APOC2, MIR4531, LIPE-AS1, TOMM40, ZNF234, CEACAM8, CLASRP, CLPTM1, CEACAM20, IRGQ, ZNF428, IGSF23, ZNF296, MEGF8, CADM4, ERF, CIC, ETHE1, PRG1, CBLC, ZNF285, LYPD3, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GSK3A, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, PINLYP, LIPE, NA NA NA NA NA NA NA NA NA LTS-032 BCAM, PSG8, PAFAH1B3, PLAUR, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CEACAM19, CD177, PVR, NECTIN2, RELB, BCL3, CEACAM1, PSG10P, PHLDB3, XRCC1, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, TEX101, CNFN, EXOC3L2, ZNF235) 0.281288271471211 99 0.0518397165811442 2.12247837775622 4173 0.511788971581455 7 5 2 -6.79248759327732 LTS-032 NA NA NA NA LTS-032 chr19 45731516 45791174 59659 * c(MARK4, EXOC3L2) NA 0 NA 2.08526119272145 73 0.319437553892992 7 NA NA -5.76475898811277 LTS-032 chr19 45791175 45797595 6421 * MARK4 NA 0 NA 0.686 1 NA NA NA NA NA LTS-032 chr19 45797596 45810035 12440 * c(CKM, MARK4) 0.059 1 NA 0.715526633370231 33 0.213491315201969 2 2 0 -5.76636600321536 LTS-032 chr19 45810036 50462244 4652209 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, SAE1, MIR4749, MIR4750, MIR4751, MIR5088, RNU6-66P, LOC101059948, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, KPTN, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, CCDC155, NA NA NA NA NA NA NA NA NA LTS-032 DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, BBC3, DKKL1, C5AR2, DHDH, GPR4, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, IRF3, KCNA7, IGFL1, KCNJ14, BHMG1, IGFL3, LHB, LIG1, MIR150, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, FKRP, TBC1D17, FUZ, OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CYTH2, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.0704398776381377 183 0.0302072466761941 0.661783283053646 9316 0.255725729955346 2 2 0 -6.77446765977501 LTS-032 NA NA NA NA LTS-032 chr19 50462245 50462298 54 * SIGLEC11 0.104 1 NA 0.218 1 NA NA NA NA NA LTS-032 chr19 50462299 50464253 1955 * SIGLEC11 0.408274911536096 3 0.235592869162036 0.706579155655175 27 0.359412590564674 5 3 2 -6.73848906858792 LTS-032 chr19 50464254 50475175 10922 * c(SIGLEC11, SIGLEC16) 0.0966920415387769 4 0.0619811799392902 0.28519052010523 41 0.199215271478479 1 1 0 -6.84823118737386 LTS-032 chr19 50475176 50475259 84 * SIGLEC16 0.271200679108702 2 0.228395490323255 0.372425521681487 7 0.265656330085104 4 3 1 -6.73405033720358 LTS-032 chr19 50475260 50493120 17861 * c(SIGLEC16, VRK3) 0.037 1 NA 0.707705740122863 35 0.210884200969365 2 2 0 -5.76673843751289 LTS-032 chr19 50493121 52133720 1640600 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, NAPSB, KLK5, ZNF473, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, NA NA NA NA NA NA NA NA NA LTS-032 SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, MYH14, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.0754250597325172 87 0.0541690627233095 0.674203780325648 2942 0.233937498945959 2 2 0 -6.78325373430593 LTS-032 NA NA NA NA LTS-032 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.474 1 NA NA NA NA NA LTS-032 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.117619586530263 2 0.0700035713374682 1.09403095737838 39 0.537073353253193 9 8 1 -6.81476817839659 LTS-032 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.804 1 NA NA NA NA NA LTS-032 chr19 52196825 53770803 1573979 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.0793487035634115 54 0.0562379049811927 0.644368314510787 2052 0.213323202428468 2 2 0 -6.74982677815889 LTS-032 chr19 53770804 53788218 17415 * c(VN1R4, FAM90A27P) NA 0 NA 1.11579627112833 39 0.670224948641407 4 NA NA -5.76451443330174 LTS-032 chr19 53788219 53792975 4757 * BIRC8 NA 0 NA 0.664 1 NA NA NA NA NA LTS-032 chr19 53792976 54720454 927479 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB3, BIRC8, OSCAR, ZNF813, TMC4, TPM3P9, ZNF525, PRPF31, LOC284379, VSTM1, TFPT, ZNF761, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, NA NA NA NA NA NA NA NA NA LTS-032 MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, ZNF765, NLRP12, MYADM, ZNF845) 0.061653597989829 26 0.0320269357788817 0.637317864586203 1923 0.169818069203368 2 2 0 -6.77476987637312 LTS-032 NA NA NA NA LTS-032 chr19 54720455 54726870 6416 * c(LILRB3, LILRA6) 0.428 1 NA 0.586455057203901 59 0.440257001480301 2 2 0 -5.76456960570968 LTS-032 chr19 54726871 54778185 51315 * c(LILRB2, LILRB5, LILRB3, LILRA6) 0.236634120182638 9 0.190710513606356 0.682423835254284 141 0.409510839860834 4 3 1 -6.80684304875165 LTS-032 chr19 54778186 54782407 4222 * c(LILRB2, LILRA6) 0.054 1 NA 0.706938609354777 40 0.420370952636493 2 2 0 -5.76454562863916 LTS-032 chr19 54782408 55331479 549072 * c(MIR4752, LILRB2, LILRB1, LILRB4, LILRA1, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.0707679283213232 46 0.0334193455502173 0.649627502113141 1103 0.382093530620021 2 2 0 -6.73367136103429 LTS-032 chr19 55331480 55333109 1630 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.607 1 NA NA NA NA NA LTS-032 chr19 55333110 55349237 16128 * c(KIR2DS4, KIR3DL1) 0.0450574668061848 10 0.0310698138606161 1.67975561833248 39 1.72636455328827 3 3 0 -6.74386423915914 LTS-032 chr19 55349238 55350906 1669 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.453 1 NA NA NA NA NA LTS-032 chr19 55350907 56188958 838052 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, DNAAF3, IL11, KIR2DS4, KIR3DL1, KIR3DL2, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628, NCR1) 0.0666316057694483 76 0.0387900217771747 0.660798808318455 2331 0.288730259203546 2 2 0 -6.74301017560101 LTS-032 chr19 56188959 56273288 84330 * c(EPN1, NLRP9, RFPL4A) 0.0378075502396379 3 0.0395516539898565 0.926060300903827 177 0.664839657818807 4 4 0 -6.74037391374123 LTS-032 chr19 56273289 56978503 705215 * c(NLRP13, NLRP8, NLRP5, ZNF787, NLRP4, ZNF542P, ZNF582, ZNF583, NLRP11, RFPL4A, ZSCAN5B, ZNF582-AS1, ZNF444, ZNF667, RFPL4AL1, ZSCAN5A, GALP) 0.068764203726428 34 0.0454451933338164 0.673556829006722 951 0.359882706714681 2 2 0 -6.7412983020833 LTS-032 chr19 56978504 56981229 2726 * ZNF667 NA 0 NA 0.883 1 NA NA NA NA NA LTS-032 chr19 56981230 58388429 1407200 * c(MIMT1, ZNF667-AS1, PEG3-AS1, ZNF587B, ZNF211, TRAPPC2B, ZNF460, ZIM3, ZNF543, ZFP28, SMIM17, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZIM2, ZNF549, ZNF547, ZIK1, ZNF776, ZNF530, ZNF773, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, PEG3, ZNF586, ZNF416, VN1R1, ZNF304, ZNF471, USP29, ZNF71, ZNF667, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZNF419, ZNF552, ZNF671, ZNF587, ZNF551, ZNF835, ZNF264) 0.0738383093331553 29 0.0718160622565005 0.933841850856198 2286 0.228283802486841 3 3 0 -6.80915465086091 LTS-032 chr19 58388430 58400020 11591 * ZNF814 NA 0 NA 0.694 1 NA NA NA NA NA LTS-032 chr19 58400021 58600072 200052 * c(LOC100128398, ZNF256, C19orf18, ZNF418, ZNF417, ZSCAN1, ZSCAN18, ZNF814, ZNF135, ZNF606) 0.0670148760319331 28 0.0309618941424598 0.685846899032732 636 0.212759194502243 2 2 0 -6.75064234750117 LTS-032 chr19 58600073 58724562 124490 * c(ZNF274, ZSCAN18, ZNF329) NA 0 NA 0.628694667909861 109 0.11182709579704 2 NA NA -5.76681389610779 LTS-032 chr19 58724563 58755303 30741 * c(ZNF274, ZNF544) NA 0 NA 1.083 1 NA NA NA NA NA LTS-032 chr19 58755304 58898193 142890 * c(A1BG, MIR4754, ZNF837, ZNF497, ZNF544, ZSCAN22, A1BG-AS1, ZNF8) 0.023 1 NA 0.882277433071737 293 0.203633350755823 3 3 0 -5.76753367296562 LTS-032 chr19 58898194 59074653 176460 * c(MZF1-AS1, MIR4754, TRIM28, SLC27A5, ZNF584, ZNF324, CHMP2A, ZNF324B, ZNF446, RPS5, RNF225, MZF1, ZNF132, ZBTB45, UBE2M) 0.0657681844231532 19 0.0240366435659834 0.849857803453673 529 0.228650862304932 2 2 0 -6.90816871977476 LTS-032 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.88033216263513 35 0.131254150794709 3 NA NA -5.76495960208323 LTS-032 chr20 68260 238507 170248 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) 0.458 1 NA 0.813664671439973 89 0.191639898946521 3 3 0 -5.80408943772643 LTS-032 chr20 238508 1553603 1315096 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.33351788498475 50 0.0537279769785173 0.921269207707985 1843 0.269157525245315 3 2 1 -6.78279295845193 LTS-032 chr20 1553604 1558905 5302 * SIRPB1 NA 0 NA 0.719 1 NA NA NA NA NA LTS-032 chr20 1558906 1586631 27726 * SIRPB1 NA 0 NA 0.186115411182715 39 0.198207190632312 1 NA NA -5.95150756303291 LTS-032 chr20 1586632 1591938 5307 * SIRPB1 NA 0 NA 0.961 1 NA NA NA NA NA LTS-032 chr20 1591939 8112970 6521032 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PLCB1, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, TMX4, GPCPD1, CPXM1, NA NA NA NA NA NA NA NA NA LTS-032 MAVS, EBF4, PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.343951606698754 161 0.0715837671143795 0.922694840718575 5497 0.258587811250338 3 2 1 -6.73808474266336 LTS-032 NA NA NA NA LTS-032 chr20 8112971 26188981 18076011 * c(C20orf78, LOC100130264, SNAP25-AS1, LOC100134868, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, FAM182A, NA NA NA NA NA NA NA NA NA LTS-032 MIR663AHG, LINC00652, NXT1, VSX1, FOXA2, LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, KIZ, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, MIR663A, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MGME1, DTD1, ENTPD6, GINS1) 0.341633260535552 161 0.0803969224519916 0.962268310550653 7147 0.287887977388721 3 2 1 -7.02434197656986 LTS-032 NA NA NA NA LTS-032 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.660367990563068 5 0.312269434943608 2 NA NA -5.76441033246699 LTS-032 chr20 29625845 29625876 32 * FRG1BP 0.397 1 NA 1.23 1 NA NA NA NA NA LTS-032 chr20 29625877 29652219 26343 * c(MLLT10P1, FRG1BP) 0.350457036220014 12 0.100105853066551 1.19323134516864 38 0.626980104316799 3 2 1 -6.73593337263233 LTS-032 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 1.758 1 NA NA NA NA NA LTS-032 chr20 29845417 31878894 2033478 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, BPIFA1, PLAGL2, BCL2L1, BPIFB2, HM13, PDRG1, COX4I2, MYLK2, BPIFB1, KIF3B, TM9SF4) 0.334572202528009 56 0.0799701060218308 1.74926626288058 2983 0.475067271353757 6 4 2 -6.7375089336364 LTS-032 chr20 31878895 32233774 354880 * c(CDK5RAP1, SNTA1, CBFA2T2, BPIFB1) 0 1 NA 1.87392932402465 299 0.472401704563275 6 6 0 -5.76927715258011 LTS-032 chr20 32233775 33442545 1208771 * c(MIR4755, PXMP4, C20orf144, CHMP4B, PIGU, HMGB3P1, ACTL10, E2F1, AHCY, RALY, NCOA6, GGT7, ASIP, TP53INP2, NECAB3, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2) 0.193797082226875 9 0.21079551703013 1.76511963478704 1349 0.511778686602434 6 5 1 -6.73473509090648 LTS-032 chr20 33442546 33470694 28149 * c(GGT7, ACSS2) 0.372 1 NA 1.74460472554374 73 0.44987995270039 6 6 0 -5.76441013494469 LTS-032 chr20 33470695 62905721 29435027 * c(ADA, ACOT8, UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, ZNF663P, LOC100131496, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, LOC100287792, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, LOC100506384, EPPIN-WFDC6, TGIF2-C20orf24, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR499B, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, LINC00489, TRERNA1, NA NA NA NA NA NA NA NA NA LTS-032 SGK2, RBM12, ARFRP1, OGFR-AS1, MMP24-AS1, RGS19, SYCP2, MYL9, WFDC2, CEBPB, PROCR, ARFGEF2, TCFL5, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, ADRM1, OGFR, UBE2C, DIDO1, PTPRT, PKIG, CEP250, HRH3, TP53RK, RBPJL, CHRNA4, DNTTIP1, FAM210B, PHACTR3, BHLHE23, NKAIN4, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, MIR1-1HG, FAM83C, COL9A3, GATA5, SLC32A1, ZBTB46, WFDC3, GCNT7, CBLN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 CTCFL, MROH8, SAMD10, ABHD16B, SOGA1, TLDC2, RIMS4, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, FAM65C, RBBP8NL, CNBD2, R3HDML, CSE1L, CSTF1, ADIG, GTSF1L, WFDC5, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, EPB41L1, EYA2, DLGAP4, ZHX3, SLC9A8, ADNP, ZMYND8, SPO11, PRPF6, C20orf166-AS1, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, SS18L1, PPP1R16B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TRPC4AP, MTG2, GMEB2, SNORD12C, SNORA71B, SNORA71A, GHRH, TP53TG5, MOCS3, GNAS, WFDC10B, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, GSS, HNF4A, LOC339568, ARHGAP40, EIF6, KCNB1, KCNG1, KCNQ2, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, FAM209B, LAMA5, SPINT4, SUMO1P1, LBP, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MMP9, ZFAS1, MYBL2, MYT1, NFATC2, NNAT, NTSR1, OPRL1, STMN3, SLC35C2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PRELID3B, PCK1, IFT52, PHF20, SCAND1, ATP5E, NELFCD, RTFDC1, OSER1, PIGT, ERGIC3, RTEL1, PFDN4, PI3, PLCG1, PLTP, SOX18, CTSA, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, UQCC1, PCMTD2, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, ARFGAP1, EDEM2, DOK5, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, SLC2A4RG, PSMA7, PMEPA1, CASS4, EPPIN, RALGAPB, JPH2, SALL4, ZNFX1, PTGIS, RAB22A, NDRG3, MIR499A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SLC12A5, ZNF512B, PTK6, PREX1, COL20A1, MYH7B, PTPN1, NCOA5, RPRD1B, RBL1, TGIF2, CDH26, KCNK15, DHX35, RPN2, RPS21, SDC4, MANBAL, SLC17A9, ELMO2, ZNF335, LOC63930, PCIF1, FAM217B, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, BMP7, SLPI, SNAI1, SPAG4, BPI, SRC, SRMS, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, AURKA, TAF4, TCEA2, SNORD12, MIR645, MIR647, TFAP2C, TGM2, TNNC2, TOP1, TPD52L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 UBE2V1, YWHAB, SYS1-DBNDD2, HAR1A, HAR1B, MKRN7P, ZNF217, GDAP1L1, LINC01260, FNDC11, PPDPF, TTPAL, BIRC7, NPEPL1, ACTR5, DSN1, DNAJC5, PABPC1L, TUBB1, ZBP1, SLC2A10, FAM83D, CABLES2, GDF5, NCOA3, SLA2, CHD6, PARD6B, ZGPAT, RAE1, TOX2, BCAS1, HELZ2, KIAA1755, STX16, TNFRSF6B, MATN4, DPM1, WISP2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, VAPB, B4GALT5, CD40, RBM39, TTI1, SPATA2, OSBPL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 MAFB) 0.34096487011824 489 0.0679418700576419 1.72937601273133 26473 0.452328991586033 6 4 2 -6.73977860962731 LTS-032 NA NA NA NA LTS-032 chr20 62905722 62906286 565 * PCMTD2 NA 0 NA 1.87890487858262 13 0.258706521182911 7 NA NA -5.76443683452799 LTS-032 chr20 62906287 62906353 67 * PCMTD2 NA 0 NA 3.574 1 NA NA NA NA NA LTS-032 chr20 62906354 62959313 52960 * c(LINC00266-1, PCMTD2) NA 0 NA 1.43170166008602 39 0.981242819583998 5 NA NA -5.76443183624886 LTS-032 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.242 1 NA 0.363664506900674 15 0.717817810815397 1 1 0 -5.76441285911684 LTS-032 chr21 9907203 10793961 886759 * TEKT4P2 0.283989386443518 23 0.0923327245120075 1.93128986101122 46 1.08583556819595 7 5 2 -6.74278817422935 LTS-032 chr21 10793962 10862591 68630 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-032 chr21 10862592 10944816 82225 * TPTE 0.435255494550498 3 0.0949789450352024 0.711550176879631 56 0.544657783359447 2 1 1 -6.73497958467606 LTS-032 chr21 10944817 10959723 14907 * TPTE NA 0 NA 1.218 1 NA NA NA NA NA LTS-032 chr21 10959724 11059877 100154 * c(BAGE, TPTE, BAGE3) 0.317795557423432 11 0.106164452191357 1.10134565045456 54 1.03999544763289 6 4 2 -6.77442000882811 LTS-032 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.40586960329575 5 0.154672234095199 5 NA NA -5.7662850918263 LTS-032 chr21 14745307 14917181 171875 * MIR3156-3 0.359 1 NA 0.758698987032944 53 0.33406334407109 2 2 0 -5.79034581607164 LTS-032 chr21 14917182 40847114 25929933 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, MIR4759, RWDD2B, RNU6-67P, BRWD1-AS1, SAMSN1-AS1, OLIG2, DSCR4, DSCR3, USP16, CCT8, BTG3, ADAMTS5, LINC00310, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, LIPI, ABCC13, LCA5L, CXADR, RCAN1, DYRK1A, LINC00189, ERG, ETS2, MORC3, NA NA NA NA NA NA NA NA NA LTS-032 CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, DSCR10, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, HMGN1, POTED, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, KCNJ6, KCNJ15, LINC00317, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, ANKRD20A11P, LINC00114, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, PIGP, ATP5J, RIPPLY3, ATP5O, BRWD1, RBM11, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, SETD4, NA, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 BACH1, SCAF4, JAM2, EVA1C, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, HSPA13, TIAM1, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, NRIP1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.335407884503531 286 0.08346662139006 0.890704077715051 10907 0.586722794804118 3 2 1 -6.78769285438403 LTS-032 NA NA NA NA LTS-032 chr21 40847115 47974582 7127468 * c(LOC100129027, MIR3197, ITGB2-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, DSCAM-IT1, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, DIP2A, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, NA NA NA NA NA NA NA NA NA LTS-032 KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, LOC642852, SH3BGR, TMPRSS3, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, CBS, MCM3AP, RSPH1, UMODL1, ABCG1) 0.347163736754684 267 0.0628650752378544 0.924781513757444 8192 0.255165204075006 3 2 1 -6.73793785554808 LTS-032 NA NA NA NA LTS-032 chr21 47974583 48084993 110411 * c(DIP2A, PRMT2, S100B) NA 0 NA 0.820410946155158 229 0.188106350045525 3 NA NA -5.78762904869683 LTS-032 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.388 1 NA 1.61729191995994 5 0.825553874680508 6 6 0 -5.76810424830456 LTS-032 chr22 16887896 21576319 4688424 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, COMT, CRKL, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, TSSK2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, SERPIND1, TPTEP1, CCDC188, LRRC74B, BCRP2, MIR185, ARVCF, NA NA NA NA NA NA NA NA NA LTS-032 THAP7-AS1, P2RX6P, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC7A4, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UFD1L, ZNF74, C22orf29, THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, RIMBP3, SCARF2, P2RX6, SNAP29, DGCR2) 0.429846039521358 215 0.0942669824810892 0.657798274158264 6034 0.252033805984845 2 1 1 -6.76199737532981 LTS-032 NA NA NA NA LTS-032 chr22 21576320 21797024 220705 * c(HIC2, POM121L8P) NA 0 NA 0.388 1 NA NA NA NA NA LTS-032 chr22 21797025 21822665 25641 * c(HIC2, TMEM191C) 0.421 1 NA 0.381154594551701 137 0.0946347926971704 1 1 0 -5.76738328122377 LTS-032 chr22 21822666 22025462 202797 * c(MIR301B, YDJC, CCDC116, SDF2L1, PPIL2, PI4KAP2, MIR130B, TMEM191C, UBE2L3) 0.082 1 NA 0.40012737336356 247 0.181036388853371 1 1 0 -5.79445913168041 LTS-032 chr22 22025463 24340955 2315493 * c(DDTL, IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, C22orf15, DDT, PRAME, PPIL2, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, YPEL1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, MAPK1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, VPREB1, ZNF70, TOP3B, GGTLC2, GUSBP11, DERL3, RAB36, PPM1F, BMS1P20) 0.132234667611728 116 0.0609473437538067 0.383205471190923 2530 0.19739716343161 1 1 0 -6.82489128267924 LTS-032 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-032 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.678993970578209 57 0.165115942404391 2 NA NA -5.76739961610378 LTS-032 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.376 1 NA NA NA NA NA LTS-032 chr22 24400149 24452830 52682 * c(CABIN1, GSTTP2) NA 0 NA 0.38844053410374 52 0.0900291137760455 1 NA NA -5.77867312980693 LTS-032 chr22 24452831 24838165 385335 * c(ADORA2A, SPECC1L, CABIN1, GGT5, POM121L9P, SUSD2, ADORA2A-AS1) 0.446499166423684 4 0.0208166599946613 0.631802138997764 573 0.137352617186228 2 1 1 -6.9544752591714 LTS-032 chr22 24838166 24838171 6 * c(ADORA2A, SPECC1L, ADORA2A-AS1) NA 0 NA 0.349 1 NA NA NA NA NA LTS-032 chr22 24838172 26159289 1321118 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, TMEM211, GGT1, LRRC75B, PIWIL3, UPB1, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.171654885989403 19 0.100156865270528 0.372440867725333 1029 0.135693646384552 1 1 0 -6.88687907417705 LTS-032 chr22 26159290 26166239 6950 * MYO18B NA 0 NA 0.36823031304915 35 0.0656184796680751 1 NA NA -5.76445917910864 LTS-032 chr22 26166240 26166744 505 * MYO18B NA 0 NA 0.744 1 NA NA NA NA NA LTS-032 chr22 26166745 26219605 52861 * MYO18B 0.493 1 NA 0.677929079126465 35 0.153948490785477 2 2 0 -5.76850447304085 LTS-032 chr22 26219606 26830479 610874 * c(SEZ6L, ASPHD2, MYO18B) 0.442861716195882 11 0.0604887668008772 0.647880904366886 384 0.260945781340892 2 1 1 -6.74729857307504 LTS-032 chr22 26830480 26838323 7844 * ASPHD2 NA 0 NA 0.44 1 NA NA NA NA NA LTS-032 chr22 26838324 27026678 188355 * c(MIR548J, CRYBA4, CRYBB1, TFIP11, SRRD, ASPHD2, TPST2, HPS4) 0.114224104636353 3 0.0230651251893416 0.355816570726828 426 0.0985871911622083 1 1 0 -6.82442160361766 LTS-032 chr22 27026679 27445898 419220 * MIAT NA 0 NA 0.677 1 NA NA NA NA NA LTS-032 chr22 27445899 29696095 2250197 * c(MIR3199-2, MIR3199-1, ZNRF3-AS1, CHEK2, EMID1, HSCB, CCDC117, EWSR1, TTC28, PITPNB, C22orf31, RHBDD3, TTC28-AS1, MN1, XBP1, KREMEN1, ZNRF3) 0.44627072549029 31 0.0382564914724932 0.637202038186341 1435 0.171817936883065 2 1 1 -6.79912302686005 LTS-032 chr22 29696096 30640906 944811 * c(MIR3653, RASL10A, GAS2L1, RFPL1S, HORMAD2, AP1B1, CABP7, EWSR1, UQCR10, LIF, NEFH, NF2, ZMAT5, RFPL1, ASCC2, NIPSNAP1, THOC5, MTMR3) 0.35926434439884 16 0.0560960114446651 0.917867527530672 1380 0.277520674736499 3 2 1 -6.75296645413814 LTS-032 chr22 30640907 30642549 1643 * LIF NA 0 NA 0.646 1 NA NA NA NA NA LTS-032 chr22 30642550 34022284 3379735 * c(MIR3200, MIR3928, MIR4764, SF3A1, RFPL3S, RFPL3, RFPL2, PIK3IP1, SELENOM, DUSP18, MORC2-AS1, C22orf42, RNF215, MORC2, PES1, SEC14L2, PATZ1, PISD, OSBP2, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, SEC14L3, INPP5J, SEC14L4, SLC35E4, LOC339666, SDC4P, LIF, LIMK2, DRG1, OSM, PLA2G3, RTCB, MTFP1, TUG1, CCDC157, EIF4ENIF1, SLC5A1, SMTN, SLC5A4, GATSL3, TCN2, TIMP3, SEC14L6, YWHAH, SYN3, TBC1D10A, KIAA1656, NA NA NA NA NA NA NA NA NA LTS-032 RNF185, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.442707257702833 86 0.0668087752372427 0.651020710611414 4390 0.169880347549132 2 1 1 -6.75933009909176 LTS-032 NA NA NA NA LTS-032 chr22 34022285 34426441 404157 * c(LARGE-AS1, LARGE1) NA 0 NA 0.688477485948609 21 0.129350152318279 2 NA NA -5.83613773342329 LTS-032 chr22 35462142 35462249 108 * ISX 0.383 1 NA 0.967384662715036 3 0.1790930856659 3 3 0 -5.76441580201422 LTS-032 chr22 35462250 38220776 2758527 * c(HMGXB4, TOM1, MIR3909, LL22NC01-81G9.3, CACNG2, IFT27, TRIOBP, CDC42EP1, ELFN2, C1QTNF6, CSF2RB, TMPRSS6, GCAT, RBFOX2, RASD2, SH3BP1, APOL2, TXN2, GGA1, CYTH4, CARD10, H1F0, HMOX1, TEX33, IL2RB, LGALS1, LGALS2, MB, MCM5, MFNG, MPST, MYH9, NCF4, PDXP, PVALB, RAC2, SSTR3, TST, NOL12, KCTD17, FOXRED2, APOL6, APOL5, APOL4, APOL3, GALR3, APOL1, EIF3D, ISX) 0.346582570521727 102 0.0798610500985927 0.919817461889559 3870 0.256420897828741 3 2 1 -6.73378577986041 LTS-032 chr22 38220777 38382911 162135 * c(ANKRD54, EIF3L, POLR2F, SOX10, MIR658, MIR659, C22orf23, GALR3, MICALL1) NA 0 NA 0.916558977793822 500 0.208079921162957 3 NA NA -5.7644114280262 LTS-032 chr22 38382912 38483171 100260 * c(MIR4534, SLC16A8, POLR2F, SOX10, BAIAP2L2, PICK1) 0.406 1 NA 0.664708828180991 199 0.165288046506249 2 2 0 -5.76720541815471 LTS-032 chr22 38483172 41078249 2595078 * c(LOC100130899, LOC100506472, APOBEC3A_B, DNAL4, TAB1, DDX17, KDELR3, DMC1, FAM83F, APOBEC3D, CSNK1E, ENTHD1, ADSL, APOBEC3H, APOBEC3A, APOBEC3F, TNRC6B, CBX6, NPTXR, CBX7, MAFF, CBY1, SUN2, TMEM184B, SNORD43, APOBEC3C, SGSM3, MCHR1, KCNJ4, LOC400927, MGAT3, ATF4, PDGFB, MIEF1, TOMM22, MKL1, APOBEC3G, RPL3, FAM227A, BAIAP2L2, PLA2G6, CACNA1I, SYNGR1, RPS19BP1, GRAP2, GTPBP1, APOBEC3B, JOSD1) 0.442358883920915 81 0.079053576144502 0.649949765339483 4003 0.191230424370615 2 1 1 -6.747610597671 LTS-032 chr22 41078250 41565606 487357 * c(MIR1281, MIR4766, SLC25A17, DNAJB7, EP300, MCHR1, XPNPEP3, ST13, RBX1) 0.361700906353774 5 0.196054329204943 0.555793456963184 610 0.13827918723135 2 1 1 -7.11159509236125 LTS-032 chr22 41565607 41566388 782 * EP300 NA 0 NA 0.675 1 NA NA NA NA NA LTS-032 chr22 41566389 42276742 710354 * c(TOB2, CHADL, MEI1, POLR3H, EP300, ZC3H7B, XRCC6, CSDC2, DESI1, SNU13, ACO2, PMM1, RANGAP1, SREBF2, TEF, C22orf46, CCDC134, L3MBTL2, PHF5A) 0.442491702958503 38 0.110020252241447 0.640002825417182 1684 0.154416676400904 2 1 1 -6.73694763299029 LTS-032 chr22 42276743 42300932 24190 * c(MIR33A, SREBF2) NA 0 NA 0.705781967901195 53 0.172335483484756 2 NA NA -5.76887258280498 LTS-032 chr22 42300933 42301512 580 * SREBF2 NA 0 NA 0.347 1 NA NA NA NA NA LTS-032 chr22 42301513 42301712 200 * SREBF2 0.085 1 NA 0.408833737179089 5 0.170886512048201 1 1 0 -5.76446116422927 LTS-032 chr22 42301713 51183255 8881543 * c(LINC01310, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, TNFRSF13C, CPT1B, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, WBP2NL, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, NA NA NA NA NA NA NA NA NA LTS-032 RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, PARVB, NCAPH2, LINC00634, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, SHISA8, ODF3B, NAGA, NDUFA6, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 SREBF2, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, SMDT1, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.124506291257477 236 0.0520631305594417 0.383094519807009 8952 0.127710311193567 1 1 0 -7.37271587516248 LTS-032 NA NA NA NA LTS-032 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.326215284774118 69 0.141192950515818 1 NA NA -5.77908605225469 LTS-032 chrX 2699993 2700027 35 * XG 0.323 1 NA 1.565 1 NA NA NA NA NA LTS-032 chrX 2700028 5808449 3108422 * c(LINC01546, MXRA5, ARSH, LOC389906, ARSD, ARSE, ARSF, PRKX, NLGN4X, XG, GYG2) 0.29832232337666 15 0.111012097152904 2.00642671488845 757 0.573029638580614 7 5 2 -6.73378169082327 LTS-032 chrX 5808450 7137741 1329292 * c(MIR4770, MIR4767, STS, VCX3A, NLGN4X, PUDP) 0.427747160849947 8 0.0419489485650628 1.55969096838693 201 0.341150113440546 6 3 3 -6.82999446147409 LTS-032 chrX 7137742 7137744 3 * STS NA 0 NA 1.213 1 NA NA NA NA NA LTS-032 chrX 7137745 7272875 135131 * STS 0.385 1 NA 1.20639971150011 138 0.237991567709121 4 4 0 -5.76458677272184 LTS-032 chrX 7866304 12725717 4859414 * c(CLDN34, MSL3, CLCN4, FAM9A, FAM9B, AMELX, HCCS, SHROOM2, ANOS1, ARHGAP6, VCX3B, MID1, GPR143, VCX2, WWC3, TBL1X, MIR651, PNPLA4, FRMPD4) 0.365293872560739 35 0.123568767640268 1.52176269400492 1739 0.421613142167331 5 3 2 -6.80262903857956 LTS-032 chrX 12725718 13794405 1068688 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, GPM6B, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.411070239133152 15 0.043724461934123 1.34210533371384 1041 0.289910662383432 5 3 2 -6.82742253780915 LTS-032 chrX 13794406 24197758 10403353 * c(PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, CA5B, BEND2, PTCHD1, ASB11, ASB9, ZNF645, MOSPD2, DDX53, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, GLRA2, GPM6B, GRPR, SH3KBP1, CA5BP1, MAP3K15, YY2, NHS, MBTPS2, PDHA1, PHEX, PHKA2, PIGA, PPEF1, GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, NA NA NA NA NA NA NA NA NA LTS-032 RS1, SAT1, SCML1, MAGEB17, BMX, SMS, CDKL5, LOC729609, ZFX, APOO, S100G, KLHL15, ZRSR2, PIR, INE2, AP1S2, REPS2, SYAP1) 0.371858757219308 59 0.114292213693874 1.49538604175877 5973 0.448971980897643 5 3 2 -6.7811615994783 LTS-032 NA NA NA NA LTS-032 chrX 24197759 24197764 6 * ZFX NA 0 NA 1.712 1 NA NA NA NA NA LTS-032 chrX 24197765 30739313 6541549 * c(SUPT20HL1, IL1RAPL1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB6, SUPT20HL2, ARX, NR0B1, GK, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, PDK3, POLA1, SCARNA23, ZFX, CXorf21, PCYT1B) 0.191967847713088 11 0.154147626997923 1.76550007979907 1432 0.47707573405573 6 5 1 -6.73710493918415 LTS-032 chrX 30739314 30742271 2958 * GK NA 0 NA 1.398 1 NA NA NA NA NA LTS-032 chrX 30742272 55185656 24443385 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, LOC100132831, UXT-AS1, MIR500B, MIR4769, HUWE1, PQBP1, ATP6AP2, SSX3, TIMM17B, EBP, MAGED2, PIM2, WDR45, PRAF2, CLCN5, DGKK, FUNDC1, MAGEB16, CYBB, USP27X-AS1, FAM47A, RIBC1, CXorf38, DDX3X, FAM47B, NA, XAGE3, XAGE5, NUDT10, DMD, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, TAB3, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GK, GPR82, GPKOW, APEX2, NA NA NA NA NA NA NA NA NA LTS-032 PCSK1N, SSX6, SSX7, SSX8, SSX9, GPR34, LINC01281, CFAP47, CCDC22, HSD17B10, ERAS, ZNF81, ITIH6, LANCL3, MPC1L, ARAF, KCND1, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAOA, MAOB, FTH1P18, FAM47C, NDP, SPANXN5, TBC1D25, OTC, FOXP3, CDK16, CFP, PFKFB1, PLP2, FTHL17, GPR173, NDUFB11, GNL3L, BCOR, FAM120C, NUDT11, OTUD5, KRBOX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PRRG1, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, MID1IP1, RBM3, NYX, RP2, RPGR, DUSP21, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, NA, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, SNORA11, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, TSPAN7, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, KDM6A, WAS, XK, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, EFHC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PPP1R2P9, MAGED4B, USP11, USP9X, RBM10, KDM5C, SMC1A, TMEM47, SRPX, UXT, SLC9A7, CCNB3, INE1, CASK, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, RGN, BMP15, SLC38A5, MED14, SYTL5, MAGED1, PAGE4, JADE3) 0.361864999151047 51 0.157269906623651 1.22861333595132 13293 0.284490251381076 4 2 2 -7.00788428846281 LTS-032 NA NA NA NA LTS-032 chrX 55185657 57937169 2751513 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) NA 0 NA 1.19959236160638 813 0.302532285469028 4 NA NA -5.76494583007778 LTS-032 chrX 61999880 64725032 2725153 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MTMR8, ZC4H2, LINC01278) 0.444 1 NA 1.24819836853763 687 0.294821017509497 4 4 0 -5.8025473170643 LTS-032 chrX 64725033 103346104 38621072 * c(MIR374B, ARMCX4, UBE2DNL, LINC00630, FTX, MIR4328, MIR374C, MIR676, ARMCX5-GPRASP2, RPL36A-HNRNPH2, CDX4, CYSLTR1, TMSB15A, CHM, VSIG4, GPRASP2, DACH2, COX7B, MAP2K4P1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, H2BFWT, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, TMEM31, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, BEX3, NOX1, NA NA NA NA NA NA NA NA NA LTS-032 GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, RAB40AL, CXCR3, LPAR4, H2BFM, YIPF6, TTC3P1, FAM133A, TMSB15B, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, SLC25A53, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, GLRA4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, TCEAL9, RAB9B, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, PLP1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, GDPD2, JPX, BEX1, HDAC8, NXF5, NXF4, NXF3, KLHL4, TEX11, BEX4, TCEAL7, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, ARMCX5, FAM226B, SLC16A2, MIR545, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TCEAL4, TRMT2B, POF1B, BHLHB9, LAS1L, FRMD8P1, MAGT1, ZMAT1, GPR174, BEX2, OGT, SLC7A3, TCEAL3, FGF16, TGIF2LX, TCEAL8, ZMYM3, TCEAL1, TSIX, ACRC, SYTL4, ITM2A, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, MED12) 0.403436642638613 104 0.159090544484224 1.21051071381201 13816 0.585023339019435 4 2 2 -6.76888626375903 LTS-032 NA NA NA NA LTS-032 chrX 103346105 103347294 1190 * SLC25A53 0 1 NA 1.3393281749867 23 1.62953661785577 5 5 0 -5.7644124253924 LTS-032 chrX 103347295 107393523 4046229 * c(MID2, ATG4A, COL4A6, PIH1D3, MUM1L1, FAM199X, TSC22D3, NRK, IL1RAPL2, LOC286437, VSIG1, SLC25A53, NUP62CL, TBC1D8B, CXorf57, RBM41, TEX13B, TEX13A, PRPS1, PSMD10, ZCCHC18, SERPINA7, RNF128, MORC4, ESX1, CLDN2, RIPPLY1) 0.276835440750467 10 0.242635620724667 1.21204610437318 2117 0.352355363965852 4 3 1 -6.73854569360061 LTS-032 chrX 107393524 107396365 2842 * c(ATG4A, COL4A6) 0.454 1 NA 1.22765756938043 14 0.20076569088707 4 4 0 -5.76444466851007 LTS-032 chrX 107396366 115591496 8195131 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, MIR3978, SLC6A14, ATG4A, COL4A5, COL4A6, RBMXL3, AMOT, DCX, AGTR2, ACSL4, KCNE5, GUCY2F, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, MIR448, NXT2, RGAG1, LRCH2, SNORA35, SNORD96B, TDGF1P3, TRPC5, ALG13, CAPN6, TMEM164, IRS4, CHRDL1, AMMECR1) 0.442665556904429 31 0.0916499535105972 1.20861317211453 3342 0.285042054493868 4 2 2 -6.74888415043072 LTS-032 chrX 115591497 122758529 7167033 * c(ZBTB33, MIR1277, SLC25A5-AS1, PGRMC1, SLC6A14, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, CT83, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, SOWAHD, IL13RA1, LAMP2, NDUFA1, WDR44, TMEM255A, NKRF, THOC2, KIAA1210, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, LONRF3, CUL4B, KLHL13 NA NA NA NA NA NA NA NA NA LTS-032 ) 0.461511046102387 44 0.0305009184348599 1.16232456535554 2889 0.268257816726455 4 2 2 -7.2349310850667 LTS-032 NA NA NA NA LTS-032 chrX 122758530 123045507 286978 * c(XIAP, THOC2) 0 1 NA 1.15374439252596 212 0.346807706335838 4 4 0 -5.76601816069162 LTS-032 chrX 123045508 138670541 15625034 * c(MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, DCAF12L1, ADGRG4, ACTRT1, GPR119, LINC00889, ARHGAP36, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, FIRRE, HPRT1, XIAP, DCAF12L2, OR13H1, CCDC160, IGSF1, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, NA NA NA NA NA NA NA NA NA LTS-032 CT45A3, CT45A5, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, RAP2C, BCORL1, SMIM10, SMIM10L2B, SMARCA1, MIR542, SRD5A1P1, BRS3, CT45A2, XPNPEP2, ZIC3, ZNF75D, MAP7D3, GPR101, USP26, PHF6, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 ) 0.38611612369767 47 0.184466588557853 1.18774411329146 6074 0.417244655369846 4 2 2 -6.77377026738655 LTS-032 NA NA NA NA LTS-032 chrX 138670542 139006271 335730 * c(ATP11C, MCF2) 0.479 1 NA 1.19400640649933 313 0.274568469444402 4 4 0 -5.76441177067051 LTS-032 chrX 139006272 139793912 787641 * c(LINC00632, CXorf66, LOC389895, MIR505, SOX3) 0.365 1 NA 1.14970595978672 142 0.455426527330177 4 4 0 -5.76753205879923 LTS-032 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 1.364 1 NA NA NA NA NA LTS-032 chrX 139795670 153700996 13905327 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, NA NA NA NA NA NA NA NA NA LTS-032 GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, LINC00632, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-032 PDZD4, OPN1LW, RENBP, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.442268888557888 110 0.106052413198794 1.24476505464976 7334 0.37507771195005 4 2 2 -6.84178109615975 LTS-032 NA NA NA NA LTS-032 chrX 153700997 153714251 13255 * c(PLXNA3, UBL4A, LAGE3) 0.471902277797322 2 0.0282842712474619 1.14093165627417 100 0.265878508558197 4 2 2 -7.66637000962082 LTS-032 chrX 153714252 154774986 1060735 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, TMLHE, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, SLC10A3, IKBKG) NA 0 NA 1.14009354341312 1329 0.271515471346187 4 NA NA -5.78216866693817 LTS-032 chrY 4900801 5608782 707982 * PCDH11Y NA 0 NA 0.492080182193232 26 0.800791969528628 2 NA NA -5.81059546606089 LTS-032 chrY 13309514 13310602 1089 * character(0) 0.273 1 NA 1.10149835035408 16 0.885685457240135 4 4 0 -5.76441544208875 LTS-032 chrY 13310603 13310610 8 * character(0) 0.01 1 NA 1.21352474622588 2 1.35198816562868 4 4 0 -5.7644101353153 LTS-032 chr1 65893 762273 696381 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.35 1 NA 1.2107132074879 23 0.772932327826446 5 5 0 -5.76512326336572 LTS-033 chr1 762274 1593817 831544 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-033 CDK11B) 0.413832190131968 57 0.128472337894233 0.991530527220274 2907 0.247304550252709 3 2 1 -6.77296344681663 LTS-033 NA NA NA NA LTS-033 chr1 1593818 1597276 3459 * c(SLC35E2B, CDK11B) NA 0 NA 1.67617563576885 81 1.42418036932922 8 NA NA -5.76441077820924 LTS-033 chr1 1597277 1597282 6 * c(SLC35E2B, CDK11B) NA 0 NA 1.035 1 NA NA NA NA NA LTS-033 chr1 1597283 1671167 73885 * c(CDK11A, SLC35E2B, MMP23A, CDK11B, SLC35E2) 0.371997389610734 22 0.0784415987571927 0.82928642284651 281 0.907246306902321 1 1 0 -6.73988002701881 LTS-033 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 1.543 1 NA NA NA NA NA LTS-033 chr1 1682940 7732263 6049324 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-033 MIR551A, TP73, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21) 0.438652734698775 149 0.0948598553866495 1.05435087262703 5320 0.485730242030482 4 2 2 -6.81873511013309 LTS-033 NA NA NA NA LTS-033 chr1 7732264 7737620 5357 * CAMTA1 NA 0 NA 0.67 1 NA NA NA NA NA LTS-033 chr1 7737621 12639168 4901548 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, NA NA NA NA NA NA NA NA NA LTS-033 SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.43050188520183 91 0.112512212876639 0.990063129034409 6557 0.254035109538137 3 2 1 -6.92855798769026 LTS-033 NA NA NA NA LTS-033 chr1 12639169 12907350 268182 * c(AADACL3, AADACL4, HNRNPCL1, PRAMEF12, PRAMEF11, HNRNPCL3, PRAMEF1, DHRS3, C1orf158) 0.053 1 NA 0.986592709252743 277 0.231680040036221 3 3 0 -5.772209654855 LTS-033 chr1 12907351 13447840 540490 * c(HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF4, PRAMEF13, NA, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.330159850032211 12 0.12746265050095 1.19252970361197 76 0.781430775351641 5 4 1 -6.7469589967213 LTS-033 chr1 13447841 13802019 354179 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, PRAMEF19, PRAMEF20, NA) 0.451 1 NA 0.976322366087274 23 0.689856481035641 3 3 0 -5.76514522721036 LTS-033 chr1 13802020 16786381 2984362 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.449248735655668 59 0.0357208640514165 0.985609412854318 3219 0.538834408185788 4 2 2 -7.53165536812635 LTS-033 chr1 16786382 16977363 190982 * c(MST1P2, CROCCP3, NBPF1, NECAP2, CROCCP2) 0.366902525878853 34 0.0940739506964786 0.82778169257646 155 0.424189750325871 1 1 0 -6.78289665118361 LTS-033 chr1 16977364 17009783 32420 * character(0) 0.382111466107406 2 0.014142135623731 0.436073489275058 42 0.267401245787203 6 4 2 -7.1566711445523 LTS-033 chr1 17009784 17009812 29 * character(0) 0.438 1 NA 1.176 1 NA NA NA NA NA LTS-033 chr1 17009813 19237989 2228177 * c(MIR4695, MST1L, PADI2, IFFO2, KLHDC7A, ATP13A2, PADI4, ESPNP, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.371828211750766 85 0.116896051407795 1.03757886389167 2195 0.616416391865114 4 3 1 -6.75953639052437 LTS-033 chr1 19237990 19238452 463 * IFFO2 NA 0 NA 0.857 1 NA NA NA NA NA LTS-033 chr1 19238453 21503434 2264982 * c(LOC100506730, MINOS1-NBL1, IFFO2, VWA5B1, UBXN10, FAM43B, DDOST, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, AKR7A2, EIF4G3, CDA) 0.41034076153456 99 0.0986725164991018 0.942666482163705 3142 0.233702296674833 3 2 1 -6.75042261546344 LTS-033 chr1 21503435 21543741 40307 * ECE1 NA 0 NA 1.671 1 NA NA NA NA NA LTS-033 chr1 21543742 21991823 448082 * c(LOC100506801, ECE1, ALPL, RAP1GAP, NBPF3) 0.365332204381058 19 0.116693756253443 1.22471093378835 553 0.576210906525703 4 3 1 -6.75087224257703 LTS-033 chr1 21991824 24933757 2941934 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, NCMAP, LDLRAD2, WNT4, ASAP3, PNRC2, PITHD1, NIPAL3, GRHL3, IL22RA1, RAP1GAP, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, USP48, STPG1, ZBTB40, CDC42) 0.409750249586816 125 0.118906304670201 0.956352464906904 4233 0.295134960434182 3 2 1 -6.75171458596909 LTS-033 chr1 24933758 24934873 1116 * NCMAP NA 0 NA 0.898610292293161 18 0.219913054714783 3 NA NA -5.7644349650694 LTS-033 chr1 24934874 24987177 52304 * c(SRRM1, NCMAP) 0.234 1 NA 0.674927082893177 73 0.16187729065509 1 1 0 -5.77147520144563 LTS-033 chr1 24987178 25599142 611965 * c(SRRM1, CLIC4, SYF2, RSRP1, RHD, RUNX3) 0.247426352163196 2 0.0134350288425444 0.70374446838298 408 0.195254537553859 3 3 0 -7.46556245173691 LTS-033 chr1 25599143 25656954 57812 * c(RSRP1, RHD) 0.227 1 NA 1.51184517295222 74 0.368676541764243 7 7 0 -5.76468729154387 LTS-033 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.755 1 NA NA NA NA NA LTS-033 chr1 25666924 41157660 15490737 * c(FAM229A, MATN1-AS1, NFYC-AS1, MIR1976, MIR4255, MIR4254, MIR3659, MIR3917, MIR3605, TMEM35B, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, WASF2, CNKSR1, ZMPSTE24, CD52, PPIE, CAP1, KHDRBS1, GMEB1, NUDC, SF3A3, RCC1, SMIM12, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, PDIK1L, NA NA NA NA NA NA NA NA NA LTS-033 PAQR7, PHC2, AGO3, AGO4, FAM76A, TXLNA, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, FHL3, DNAJC8, WDTC1, NCDN, MACF1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, AHDC1, TEKT2, SMPDL3B, SFN, GPR3, LINC01226, RSPO1, EPHA10, GRIK3, GNL2, HCRTR1, HDAC1, HMGN2, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, CATSPER4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TRNP1, CD164L2, STMN1, LCK, TMEM200B, CSMD2-AS1, MATN1, MTF1, MYCL, NDUFS5, NFYC, OPRD1, PAFAH2, ZNF593, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, GPN2, MED18, TRIT1, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, CDCA8, EVA1B, TMEM57, TRIM62, PEF1, PPT1, PIGV, MAP7D1, IQCC, TMEM234, MTFR1L, PSMB2, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, DLGAP3, RBBP4, RHCE, RLF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RPA2, RPS6KA1, GPATCH3, CLSPN, OXCT2, RRAGC, TINAGL1, SFPQ, SRSF4, KIAA0754, ACTG1P20, LOC646471, SMAP2, S100PBP, MEAF6, EXO5, CEP85, MRPS15, MARCKSL1, ZFP69B, ZBTB8A, LOC653160, SLC9A1, BMP8B, PHACTR4, SCARNA1, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, LINC01137, PPIEL, ZSCAN20, SLC30A2, DNALI1, LAPTM5, AUNIP, CCDC28B, NKAIN1, AKIRIN1, YRDC, LIN28A, SH3D21, SNIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ZMYM1, FAM110D, KIAA0319L, DHDDS, ZC3H12A, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, STK40, TMEM222, SNHG3, ZDHHC18, NR0B2, NT5C1A, TRIM63, FAM167B, MFSD2A, SYTL1, LSM10, C1orf94, SNHG12, FCN3, YARS, EIF3I, PABPC4, MAP3K6, SPOCD1, UBXN11, ZMYM4, ZMYM6, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1, RIMS3, THRAP3) 0.302489180294049 225 0.0890565826912021 0.741657008634884 18653 0.205590874339702 2 2 0 -7.27630100285136 LTS-033 NA NA NA NA LTS-033 chr1 41157661 41229080 71420 * c(NFYC-AS1, MIR30C1, MIR30E, NFYC) 0.383098347329934 4 0.225500923870983 1.00711351803431 51 0.197305474318576 3 2 1 -6.74004422927344 LTS-033 chr1 41229081 41285087 56007 * c(NFYC, KCNQ4) 0.469 1 NA 1.07317010518156 69 0.246983039720612 4 4 0 -5.76460889226249 LTS-033 chr1 41285088 48713417 7428330 * c(LOC100129924, EFCAB14-AS1, KDM4A-AS1, SLFNL1-AS1, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, CYP4Z1, SLC5A9, SLFNL1, FAAH, FOXJ3, SCMH1, FOXE3, FOXD2, MAST2, SZT2, MMACHC, CYP4X1, NA NA NA NA NA NA NA NA NA LTS-033 BEST4, SNORD55, CYP4A22, RIMKLA, GUCA2A, GUCA2B, C1orf228, TCTEX1D4, IPP, SVBP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, YBX1, PRDX1, ZNF691, TMEM69, CMPK1, ATP6V0B, LURAP1, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, P3H1, ATPAF1, ELOVL1, ST3GAL3, STIL, SLC2A1, SLC6A9, TAL1, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 HECTD3, PPCS, HYI, ZMYND12, RAD54L, FOXD2-AS1, HPDL, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14, CDC20) 0.443948035876696 172 0.0776228268202985 1.05582740289365 8602 0.270748173037767 4 2 2 -6.93904425594551 LTS-033 NA NA NA NA LTS-033 chr1 48713418 48713864 447 * SLC5A9 0 1 NA 1.35042297881986 9 2.30144623009098 6 6 0 -5.76441021755663 LTS-033 chr1 48713865 52851574 4137710 * c(MIR761, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, SLC5A9, CC2D1B, EPS15, TTC39A, RNF11, C1orf185, NRDC, ORC1, TXNDC12, SPATA6, RAB3B, DMRTA2, BEND5, AGBL4, BTF3L4, ZFYVE9) 0.312345807071276 20 0.212945162202064 1.07904706949759 2456 0.360898919069436 4 3 1 -6.75753986375151 LTS-033 chr1 52851575 52991638 140064 * c(ZCCHC11, ORC1, PRPF38A) 0.452 1 NA 1.00815451609419 315 0.213945500351409 3 3 0 -5.77408752176669 LTS-033 chr1 52991639 70897896 17906258 * c(LINC01135, INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, PATJ, HHLA3, MYSM1, OMA1, LRRC42, TCEANC2, PODN, C1orf87, CPT2, UBE2U, GLIS1, CTH, IL23R, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, TCTEX1D1, AK4, SLC35D1, ZCCHC11, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, SERBP1, NA NA NA NA NA NA NA NA NA LTS-033 FOXD3, ANGPTL3, GPX7, ALG6, FAM151A, FAM159A, IL12RB2, JAK1, JUN, MROH7, LDLRAD1, LEPR, C1orf141, MIR101-1, TACSTD2, MAGOH, MGC34796, ZYG11A, NFIA, ROR1, MRPL37, HOOK1, PDE4B, HSPB11, PGM1, PIN1P1, YIPF1, L1TD1, LEPROT, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, PRKAA2, LRRC40, DEPDC1, NDC1, GNG12, LRRC7, CACHD1, MIER1, CYB5RL, RPE65, SCP2, DMRTB1, SLC1A7, COA7, TTC4, HSD52, C8A, C8B, USP1, LRP8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 BSND, DLEU2L, ZYG11B, WDR78, WLS, ANKRD13C, TM2D1, SGIP1, EFCAB7, ATG4C, DOCK7, PLPP3, DIRAS3, SRSF11, TMEM59, DNAJC6) 0.429485245405593 190 0.116231919540298 1.06842205029329 10368 0.298701629187918 4 2 2 -6.820302486878 LTS-033 NA NA NA NA LTS-033 chr1 70897897 70899442 1546 * CTH NA 0 NA 0.956 1 NA NA NA NA NA LTS-033 chr1 70899443 72401003 1501561 * c(ZRANB2-AS1, NEGR1-IT1, ZRANB2-AS2, CTH, NEGR1, MIR186, PTGER3, ZRANB2) 0.437758153371086 6 0.054858909941777 0.925820704993043 465 0.20436559670641 3 2 1 -7.09753999538811 LTS-033 chr1 72401004 72747927 346924 * NEGR1 NA 0 NA 1.178 1 NA NA NA NA NA LTS-033 chr1 72747928 89301916 16553989 * c(PIGK, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, LINC01140, ACADM, CYR61, MIGA1, UOX, LHX8, LINC01555, MSH4, TNNI3K, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, NA NA NA NA NA NA NA NA NA LTS-033 ODF2L, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, RPF1, ST6GALNAC5, SYDE2, LMO4, FPGT, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.438153915078156 114 0.0913897244878522 1.10264132407116 6337 0.311776448968152 4 2 2 -6.80758570854819 LTS-033 NA NA NA NA LTS-033 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.699 1 NA NA NA NA NA LTS-033 chr1 89318581 94041762 4723182 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, BCAR3, ZNF644, LRRC8C) 0.430191982798132 64 0.102697331102012 1.02937664291629 3456 0.275026340319888 4 2 2 -6.89762335235563 LTS-033 chr1 94041763 94047867 6105 * BCAR3 NA 0 NA 1.448 1 NA NA NA NA NA LTS-033 chr1 94047868 101194926 7147059 * c(MIR760, LINC01349, LOC100129046, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, CNN3, SLC44A3, LRRC39, TMEM56, DBT, PLPPR5, SASS6, AGL, DPYD, ALG14, F3, SLC35A3, ABCA4, RWDD3, GCLM, DNTTIP2, FRRS1, MIR137HG, MIR137, FLJ31662, SNX7, GPR88, TRMT13, PALMD, PTBP2, ABCD3, MFSD14A, MIR553, LOC729970, LOC729987, VCAM1, BCAR3, CDC14A, RTCA, ARHGAP29, PLPPR4) 0.45330012840981 37 0.0829978653077635 1.10102080410503 3067 0.292958764852865 4 2 2 -6.91451482007072 LTS-033 chr1 101194927 103354138 2159212 * c(OLFM3, COL11A1, SLC30A7, S1PR1, EXTL2, DPH5, VCAM1, DNAJA1P5) 0.456458685345864 3 0.0510130702206144 0.91559211589581 455 0.187707864170325 3 2 1 -7.54273289289525 LTS-033 chr1 103354139 103354428 290 * COL11A1 0.343 1 NA 1.23917412160354 7 0.277757688162422 5 5 0 -5.76441030470987 LTS-033 chr1 103354429 107938088 4583660 * c(LOC100129138, COL11A1, NTNG1, AMY2A, AMY2B, PRMT6, RNPC3, ACTG1P4) 0.268409193787845 6 0.179140633767626 0.973433681575982 473 0.234921720280191 3 3 0 -6.80876284347824 LTS-033 chr1 107938089 107946302 8214 * NTNG1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-033 chr1 107946303 120478271 12531969 * c(MIR942, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, MAB21L3, ATXN7L2, C1orf194, HSD3BP4, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, NBPF4, CHIAP2, DENND2C, FNDC7, UBL4B, CELSR2, SPAG17, HIPK1, NTNG1, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, PHGDH, NA NA NA NA NA NA NA NA NA LTS-033 AMPD1, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, ATP5F1, TRIM33, RSBN1, GDAP2, FAM46C, ST7L, PRPF38B, SLC22A15, LRIF1, CTTNBP2NL, FAM212B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, RBM15, DCLRE1B, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, ZNF697, SLC16A4, CD2, CD101, CD53, CD58, LRIG2) 0.293355143002765 231 0.0967151290476926 0.75594767599858 12401 0.259960845100123 2 2 0 -6.85373000109729 LTS-033 NA NA NA NA LTS-033 chr1 120478272 120479954 1683 * NOTCH2 NA 0 NA 1.374 1 NA NA NA NA NA LTS-033 chr1 120479955 121116733 636779 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.301643558136568 12 0.092223501573212 0.965544842907677 294 1.16612438953139 2 2 0 -6.7459164638835 LTS-033 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.975504975691728 59 0.240843425933349 3 NA NA -5.76762324653133 LTS-033 chr1 143912360 144013853 101494 * FAM72D 0.282 1 NA 0.820663012109454 5 0.208761346996996 2 2 0 -5.76779295533268 LTS-033 chr1 144013854 145039866 1026013 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.391790617086104 58 0.0905417986450202 0.964178394425656 507 0.283262412335062 3 2 1 -6.73938537910408 LTS-033 chr1 145039867 145074939 35073 * c(NBPF20, LOC653513, PDE4DIP) 0.251 1 NA 0.884213543857517 9 0.224373262914972 3 3 0 -5.76584115990724 LTS-033 chr1 145074940 145282904 207965 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.278374543080296 20 0.0788125023477607 0.974533131041457 170 0.36675940836858 3 3 0 -6.80900476665636 LTS-033 chr1 145282905 145283557 653 * c(NBPF10, NBPF20, NOTCH2NL) 0.356 1 NA 0.775185069060637 19 0.304113840642243 2 2 0 -5.76441039156119 LTS-033 chr1 145283558 145457257 173700 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL, POLR3GL) 0.419282491249042 8 0.0768370260449256 0.957519601886022 218 1.10860866194929 4 2 2 -6.74922372992913 LTS-033 chr1 145457258 150808889 5351632 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, MIR5087, FALEC, SF3B4, PIAS3, POLR3C, MTMR11, CD160, VPS45, LIX1L, CIART, ANKRD35, NBPF12, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, HIST2H2AB, HIST2H2BC, LINC01138, LOC388692, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, MRPS21, ADAMTSL4, GOLPH3L, PRKAB2, OTUD7B, NA NA NA NA NA NA NA NA NA LTS-033 LINC00869, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, HORMAD1, POLR3GL, ITGA10, PEX11B, PRPF3, CHD1L, SV2A, RBM8A) 0.417237764720445 57 0.132625691081468 1.03586282970874 4261 0.303001616665164 4 2 2 -6.83810787526547 LTS-033 NA NA NA NA LTS-033 chr1 150808890 150921542 112653 * c(ARNT, SETDB1) 0 1 NA 0.957228655241877 95 0.362537395066976 3 3 0 -5.76463316332284 LTS-033 chr1 150921543 151274801 353259 * c(TNFAIP8L2-SCNM1, SEMA6C, MLLT11, GABPB2, BNIPL, TMOD4, CERS2, LYSMD1, PI4KB, C1orf56, FAM63A, CDC42SE1, PSMD4, ZNF687, PRUNE1, VPS72, SCNM1, TNFAIP8L2, PIP5K1A, ANXA9, SETDB1) 0.356184405133626 11 0.216363036668382 1.00473719144003 1405 0.254633322216555 4 3 1 -6.75668889996862 LTS-033 chr1 151274802 151288172 13371 * PI4KB 0.373 1 NA 1.04144169667751 31 0.175707283464191 4 4 0 -5.76503409829883 LTS-033 chr1 151288173 152760344 1472172 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, POGZ, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, PI4KB, CRCT1, PSMB4, CGN, RFX5, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D, SELENBP1) 0.411377854349466 53 0.127174243063184 1.05307385153824 2367 0.378007107576265 4 2 2 -6.74252962712887 LTS-033 chr1 152760345 152777362 17018 * c(LCE1C, LCE1D, LCE1E) 0.401177095682159 9 0.0400419918474482 1.78524932683557 51 0.594458611498154 12 7 5 -6.73521773079771 LTS-033 chr1 152777363 153427569 650207 * c(PGLYRP3, LELP1, SPRR4, S100A7A, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PGLYRP4, PRR9, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.406063374814268 13 0.129955367091542 1.08146482969918 575 0.43766313521275 4 2 2 -6.73333904481329 LTS-033 chr1 153427570 153587308 159739 * c(S100A16, S100A14, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7) 0.474 1 NA 1.00245572662259 131 0.179493300653389 3 3 0 -5.77773106161589 LTS-033 chr1 153587309 156844880 3257572 * c(MIR190B, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, CREB3L4, DCST1, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, ILF2, INSRR, KCNN3, NA NA NA NA NA NA NA NA NA LTS-033 C1orf189, VHLL, LMNA, MIR9-1, MEF2D, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, S100A14, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, INTS3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, DAP3, MRPL24, PAQR6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, UBAP2L, DENND4B) 0.457060661893004 134 0.0783727833943154 1.02057423891185 9064 0.237617766498313 4 2 2 -7.12772120869819 LTS-033 NA NA NA NA LTS-033 chr1 156844881 156845341 461 * NTRK1 NA 0 NA 1.456 1 NA NA NA NA NA LTS-033 chr1 156845342 157015026 169685 * c(LRRC71, PEAR1, NTRK1, MIR765, ARHGEF11) 0.459404440531131 29 0.0383371098303952 1.0946708341656 517 0.268537145822545 4 2 2 -7.67799058199647 LTS-033 chr1 157015027 157095470 80444 * c(ETV3, ETV3L, ARHGEF11) 0.445 1 NA 1.11751637104721 137 0.219476028613856 4 4 0 -5.76487312173217 LTS-033 chr1 157095471 157647526 552056 * c(FCRL3, ETV3, CYCSP52, FCRL5, FCRL4) 0.338880900526131 9 0.218891208391546 1.10312872603029 385 0.345864385249923 4 3 1 -6.73547696773305 LTS-033 chr1 157647527 157669580 22054 * FCRL3 0.489 1 NA 1.15784881349968 93 0.183993144144284 4 4 0 -5.76567760141026 LTS-033 chr1 157669581 158548720 879140 * c(FCRL1, FCRL3, OR10T2, OR6P1, OR10X1, OR10R2, OR10K2, OR10K1, OR6Y1, KIRREL, LOC646268, FCRL2, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.448510589747323 28 0.0956344658488824 1.1473150244821 878 0.550127667106439 4 2 2 -6.84670201709724 LTS-033 chr1 158548721 160341876 1793156 * c(CADM3-AS1, LINC01133, OR10J5, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, PYHIN1, FCER1A, NCSTN, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, MNDA, OR10J3, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, DUSP23, SLAMF8, IGSF9, CADM3, PEX19, SPTA1, OR6N2, OR6K2, TAGLN2, CASQ1, PEA15, SLAMF9, PIGM, IGSF8, AIM2) 0.461027964035469 39 0.0330575092887814 1.05900875465491 2943 0.282435781226221 4 2 2 -8.02172845684625 LTS-033 chr1 160341877 160390936 49060 * c(NHLH1, VANGL2) 0 1 NA 1.23329180296372 49 0.604246262643276 5 5 0 -5.76442473346979 LTS-033 chr1 160390937 160579039 188103 * c(SLAMF6, VANGL2, CD84) 0.352881323295878 9 0.197454073422432 1.07223506660533 373 0.441826259256073 4 3 1 -6.73326358362993 LTS-033 chr1 160579040 160648549 69510 * c(SLAMF1, CD48) 0.478 1 NA 0.994000674201044 86 0.17382223257182 3 3 0 -5.76913364708635 LTS-033 chr1 160648550 161565324 916775 * c(TSTD1, MIR5187, KLHDC9, ITLN2, FCER1G, FCGR2A, FCGR3A, ARHGAP30, CFAP126, USP21, HSPA6, APOA2, LY9, MPZ, NDUFS2, NIT1, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, SLAMF7, SDHC, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, FCGR2C, DEDD, ADAMTS4, CD48, NR1I3) 0.433957758129198 43 0.0879754697513025 1.03980155357049 1934 0.274902430724712 4 2 2 -6.80641604630748 LTS-033 chr1 161565325 161565400 76 * FCGR2C NA 0 NA 0.823 1 NA NA NA NA NA LTS-033 chr1 161565401 161570508 5108 * FCGR2C 0.481460354613266 2 0.0162634559672906 0.614780773507217 38 0.252055735668437 0 0 0 -11.6455440748055 LTS-033 chr1 161570509 161570541 33 * FCGR2C 0.478 1 NA 2.69 1 NA NA NA NA NA LTS-033 chr1 161570542 172380511 10809970 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-033 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.448944844508085 131 0.0779037566642811 1.06119625489474 7068 0.286168118857321 4 2 2 -6.9716589482008 LTS-033 NA NA NA NA LTS-033 chr1 172380512 175365707 2985196 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.469577914492966 34 0.0313797537961437 0.993701522832874 2150 0.300658777923359 4 2 2 -8.65535715291216 LTS-033 chr1 175365708 178822117 3456410 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.464967287652895 29 0.022887925700184 1.16231731945282 1394 0.761935461403133 4 2 2 -9.20835078984863 LTS-033 chr1 178822118 178822734 617 * c(RALGPS2, ANGPTL1) NA 0 NA 1.073 1 NA NA NA NA NA LTS-033 chr1 178822735 192154709 13331975 * c(GM140, GS1-279B7.1, MIR548F1, MIR3121, LHX4-AS1, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, BRINP3, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, LOC440704, NCF2, IER5, PDC, PLA2G4A, SWT1, C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS16, RNASEL, RNF2, NA NA NA NA NA NA NA NA NA LTS-033 TOR3A, RGS18, SOAT1, TPR, CACNA1E, NPHS2, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, LHX4, ANGPTL1, XPR1, CEP350, SMG7, FAM20B) 0.429302849378738 116 0.115306871381137 1.05211680529391 7978 0.26908666972889 4 2 2 -6.91684094240992 LTS-033 NA NA NA NA LTS-033 chr1 192154710 193222461 1067752 * c(MIR1278, RGS21, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.437 1 NA 0.883856943576933 561 0.242151153727566 3 3 0 -5.80210351522124 LTS-033 chr1 193222462 200884657 7662196 * c(MIR181A1HG, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CAMSAP2, CRB1, ZNF281, NR5A2, ASPM, GPR25, CFH, CFHR1, CFHR2, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, C1orf106, LHX9, PTPRC, CDC73, CFHR5, DDX59, KIF14) 0.441446243007884 30 0.0939843714080459 1.01829153905191 2921 0.343758716071583 4 2 2 -7.0039581791964 LTS-033 chr1 200884658 200884772 115 * C1orf106 NA 0 NA 2.386 1 NA NA NA NA NA LTS-033 chr1 200884773 201786363 901591 * c(MIR1231, MIR5191, CSRP1, KIF21B, PHLDA3, TMEM9, RPS10P7, LAD1, PKP1, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1) 0.433141616530701 41 0.106120347006502 1.12397095709441 1392 0.355531158664689 4 2 2 -6.77173121792177 LTS-033 chr1 201786364 215256757 13470394 * c(ZBED6, MIR4260, MIR3122, PCAT6, LINC00538, TIMM17A, LRRN2, CENPF, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, ARL8A, SYT2, LINC00628, GOLT1A, TATDN3, ADORA1, CR1, CR1L, CR2, C1orf74, LOC148696, LOC148709, PTPRVP, MFSD4A, PM20D1, SHISA4, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELF3, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, SLC41A1, SYT14, DSTYK, LMOD1, INTS7, NSL1, OPTC, RPS6KC1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, NA NA NA NA NA NA NA NA NA LTS-033 LOC284581, FLVCR1, UBE2T, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, KCNK2, KISS1, TMEM81, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PLXNA2, LAX1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, IPO9, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PTPN7, PTPN14, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, SLC30A1, BTG2, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, NAV1, ANGEL2, FCMR, MAPKAPK2, TMEM183A, GPR37L1, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, LPGAT1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ) 0.440251803627273 299 0.0966033307891703 1.03908026386628 13485 0.342506246301141 4 2 2 -6.97816248300668 LTS-033 NA NA NA NA LTS-033 chr1 215256758 215259677 2920 * KCNK2 NA 0 NA 1.485 1 NA NA NA NA NA LTS-033 chr1 215259678 219783811 4524134 * c(LINC00210, LYPLAL1, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1, USH2A) 0.433564568664205 39 0.0856748710869324 1.13060778073965 1527 0.316890741890894 4 2 2 -6.81868023912599 LTS-033 chr1 219783812 228364558 8580747 * c(NA, MIR320B2, MIR3620, MIR4742, MIR5008, BPNT1, LEFTY1, DUSP10, SNAP47, DNAH14, MRPL55, PARP1, BROX, CNIH3, SDE2, CCDC185, IBA57, EPHX1, EPRS, FBXO28, RAB3GAP2, RNU5F-1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, ITPKB, ARF1, MIA3, STUM, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, H3F3AP4, NVL, MARC2, SUSD4, SLC30A10, IARS2, ENAH, PSEN2, COQ8A, GJC2, ACBD3, MARC1, NA NA NA NA NA NA NA NA NA LTS-033 AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, WNT9A, C1orf35, C1orf115, HHIPL2, WDR26, CAPN2, MIXL1, CDC42BPA, DISP1, DEGS1, WNT3A, TAF1A, TMEM63A) 0.444081512714469 148 0.0867988534153506 1.02316220729956 6504 0.261790240007485 4 2 2 -7.15620099107742 LTS-033 NA NA NA NA LTS-033 chr1 228364559 228365380 822 * IBA57 0 1 NA 1.15154388653697 15 0.577141824610109 4 4 0 -5.76441405566477 LTS-033 chr1 228365381 228476367 110987 * c(IBA57, C1orf145, OBSCN) 0.327653479559068 16 0.194717573252476 1.06674066406249 437 0.243932660466259 4 3 1 -6.74330657031685 LTS-033 chr1 228476368 228492044 15677 * OBSCN 0.483 1 NA 1.02838135928577 82 0.172253858882842 4 4 0 -5.76561375817297 LTS-033 chr1 228492045 233519424 5027380 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR4666A, SPHAR, CAPN9, CCSAP, C1orf131, HIST3H2BB, EXOC8, LOC149373, RNF187, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, TRIM67, TRIM17, EGLN1, MAP10, NUP133, DUSP5P1, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, C1orf198, HIST3H2A, URB2) 0.430416466852995 91 0.098365798328638 1.04193935170298 4257 0.28938202081713 4 2 2 -6.84979670043252 LTS-033 chr1 233519425 236899900 3380476 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.43106205022051 66 0.111925145648501 0.984613660983146 2368 0.302516148178885 3 2 1 -6.85132504883949 LTS-033 chr1 236899901 247738962 10839062 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, LINC01139, C1orf229, MAP1LC3C, OR2W5, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, NA NA NA NA NA NA NA NA NA LTS-033 OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170) 0.438875461913571 89 0.107421654706571 1.07591884709844 5179 0.369220805814238 4 2 2 -6.79747162467469 LTS-033 NA NA NA NA LTS-033 chr1 247738963 247740155 1193 * GCSAML 0 1 NA 1.35329814030268 19 1.47518957647812 6 6 0 -5.764410618807 LTS-033 chr1 247740156 248737615 997460 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR13G1, OR2L5, OR2G3, OR2G2) 0.413126639683291 43 0.0822783744188591 1.17253259622157 838 0.564037720433912 4 2 2 -6.74518277880379 LTS-033 chr1 248737616 248737628 13 * OR2T34 NA 0 NA 0.669 1 NA NA NA NA NA LTS-033 chr1 248737629 248790545 52917 * c(OR2T34, OR2T10, OR2T11) NA 0 NA 0.498565856130749 57 0.102998981064138 0 NA NA -5.77576921257725 LTS-033 chr1 248790546 248801482 10937 * character(0) NA 0 NA 4.685 1 NA NA NA NA NA LTS-033 chr1 248801483 249211619 410137 * c(MIR3124, PGBD2, OR14I1, OR2T27, OR2T35, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.392474082556314 22 0.127994690095491 1.08753625897522 358 1.33586603407628 3 2 1 -6.73614010717248 LTS-033 chr1 249211620 249214134 2515 * PGBD2 NA 0 NA 0.980850510495184 45 0.157292200581073 3 NA NA -5.76453471040231 LTS-033 chr2 38824 38938 115 * FAM110C 0.45 1 NA 1.11972105172571 3 0.165349125589866 4 4 0 -5.76441151244274 LTS-033 chr2 38939 3502198 3463260 * c(TMEM18, MYT1L, SH3YL1, FAM150B, LINC01115, TRAPPC12, ACP1, SNTG2, ADI1, FAM110C, TPO, TSSC1, MYT1L-AS1, PXDN) 0.381726481915426 42 0.0982267518220936 0.958437517652952 1244 0.252373011017866 3 2 1 -6.75808297806689 LTS-033 chr2 3502199 3502273 75 * ADI1 NA 0 NA 0.879 1 NA NA NA NA NA LTS-033 chr2 3502274 26532323 23030050 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, RAB10, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, OSR1, TTC32, C2orf50, PQLC3, LINC01105, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HADHA, HADHB, NA NA NA NA NA NA NA NA NA LTS-033 HPCAL1, APOB, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, KIF3C, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, DNAJC27, NBAS, SF3B6, CPSF3, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, LINC01249, RAD51AP2, DNAJC27-AS1, VSNL1, COLEC11, CENPO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.39978769010031 157 0.0932751991672125 0.8940810120556 10029 0.241495697173987 3 2 1 -7.22585966945787 LTS-033 NA NA NA NA LTS-033 chr2 26532324 26532377 54 * ADGRF3 NA 0 NA 0.92 1 NA NA NA NA NA LTS-033 chr2 26532378 27548546 1016169 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.378893763494022 44 0.139445479506354 0.95111983726214 2435 0.238033575564619 3 2 1 -6.74219396189498 LTS-033 chr2 27548547 27548700 154 * MPV17 NA 0 NA 0.776 1 NA NA NA NA NA LTS-033 chr2 27548701 30865505 3316805 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, LCLAT1, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, YPEL5, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.420428020232198 68 0.0685287824921087 0.862079055350561 3544 0.203744833539389 3 2 1 -7.14129345825127 LTS-033 chr2 30865506 30867110 1605 * LCLAT1 NA 0 NA 0.453299691640636 39 0.337668580379399 0 NA NA -5.7644196162283 LTS-033 chr2 30867111 30953511 86401 * CAPN13 NA 0 NA 0.835 1 NA NA NA NA NA LTS-033 chr2 30953512 37317871 6364360 * c(LOC100271832, LOC100288911, MIR4765, MYADML, GPATCH11, RASGRP3, FAM98A, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, CRIM1, VIT, HEATR5B, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, STRN, MIR558, XDH, GALNT14, YIPF4, DPY30, CAPN13, FEZ2) 0.387201308873717 54 0.132239767259036 0.920623308529003 3143 0.272754990999413 3 2 1 -6.75145269528187 LTS-033 chr2 37317872 37318950 1079 * GPATCH11 NA 0 NA 0.722 1 NA NA NA NA NA LTS-033 chr2 37318951 39664194 2345244 * c(ARHGEF33, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, CYP1B1-AS1, CDKL4, LOC375196, SULT6B1, NDUFAF7, EIF2AK2, ATL2, SRSF7, SOS1, LOC728730, MORN2, GEMIN6, MAP4K3, DHX57, HNRNPLL) 0.411787111994182 35 0.131443229909629 0.84579731159481 2292 0.218465584114677 2 1 1 -6.91401975214072 LTS-033 chr2 39664195 39664281 87 * c(LOC728730, MAP4K3) NA 0 NA 1.219 1 NA NA NA NA NA LTS-033 chr2 39664282 63712201 24047920 * c(SNORA70B, MIR216B, SLC8A1-AS1, LINC01126, LOC100132215, LINC01119, DBIL5P2, MIR3682, MIR4432, MIR548AD, MIR5192, LRPPRC, CCT4, B3GNT2, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, TMEM178A, AHSA2, COMMD1, PUS10, OXER1, KCNG3, TMEM17, EPAS1, EFEMP1, PSME4, EHBP1, RHOQ, HAAO, FSHR, ERLEC1, EML4, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, LOC339803, C2orf74, PRORSD1P, LOC388942, NA NA NA NA NA NA NA NA NA LTS-033 TMEM247, LINC01118, TSPYL6, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LINC01185, MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, OTX1, WDPCP, ASB3, DYNC2LI1, PEX13, PIGF, BCL11A, PPM1B, FANCL, SRBD1, CCDC88A, PRKCE, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, MTA3, REL, RPS27A, THADA, ABCG5, ABCG8, PAPOLG, SIX3, SLC3A1, SLC8A1, SPTBN1, ZFP36L2, MIR559, LOC728730, C1GALT1C1L, VRK2, XPO1, CAMKMT, FBXO11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CALM2, THUMPD2, FAM161A, KIAA1841, MAP4K3, PNPT1, MCFD2, ATP6V1E2, PKDCC, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, USP34, ACYP2) 0.394137100782741 155 0.104622322335911 0.906888817669905 9889 0.410744274756456 3 2 1 -6.82583285808677 LTS-033 NA NA NA NA LTS-033 chr2 63712202 63713616 1415 * WDPCP NA 0 NA 0.588 1 NA NA NA NA NA LTS-033 chr2 63713617 70781005 7067389 * c(SNORA36C, LOC100133985, MIR3126, MIR4434, MIR4778, ACTR2, C1D, PROKR1, SNRNP27, WDR92, LINC00309, ASPRV1, GKN2, APLF, SPRED2, AAK1, CEP68, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339807, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, PCBP1, WDPCP, PCYOX1, VPS54, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, GMCL1, LOC644838, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, ANTXR1, NA NA NA NA NA NA NA NA NA LTS-033 FAM136A, SERTAD2, ARHGAP25) 0.392032754735221 78 0.0982391388649575 0.860991387258844 3977 0.328051605655117 3 2 1 -7.00602753276347 LTS-033 NA NA NA NA LTS-033 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.277 1 NA NA NA NA NA LTS-033 chr2 70781031 73492824 2711794 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, TGFA, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.383243679496596 47 0.108797506025179 0.951202875199947 2600 0.30030411631228 3 2 1 -6.74256059616549 LTS-033 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.734 1 NA NA NA NA NA LTS-033 chr2 73493010 87002680 13509671 * c(SNAR-H, DCTN1-AS1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, MAT2A, REG3A, NA NA NA NA NA NA NA NA NA LTS-033 TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, MRPL19) 0.417050372498488 146 0.083759715487771 0.892407337327574 6832 0.225906267282401 3 2 1 -7.14164164872494 LTS-033 NA NA NA NA LTS-033 chr2 87002681 87069379 66699 * c(RMND5A, CD8A, CD8B) 0.41 1 NA 0.908064809066035 161 0.325691373077173 3 3 0 -5.76479404739197 LTS-033 chr2 87069380 87105708 36329 * c(ANAPC1P1, RMND5A, CD8B) 0.346760919253931 2 0.0473761543394987 0.961852935503015 38 0.399951292375853 4 3 1 -6.7433929024635 LTS-033 chr2 87105709 87426066 320358 * c(ANAPC1P1, LOC285074, RMND5A) 0.371010212005414 3 0.152565832784845 0.640607488511487 136 0.363265675103031 1 1 0 -6.73435396406272 LTS-033 chr2 87426067 87426072 6 * RMND5A NA 0 NA 0.966 1 NA NA NA NA NA LTS-033 chr2 87426073 91925073 4499001 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.362373243235736 36 0.130528729429 0.965845459135679 933 0.693646408701658 3 2 1 -6.77277029380558 LTS-033 chr2 91925074 91925139 66 * character(0) 0.381 1 NA 2.868 1 NA NA NA NA NA LTS-033 chr2 91925140 91955404 30265 * character(0) 0.362808017650237 18 0.086004027873452 1.35967480584827 79 0.642845516182604 9 6 3 -6.73891350051581 LTS-033 chr2 91955405 91955470 66 * character(0) NA 0 NA 1.59124497125461 3 0.0554256258422041 7 NA NA -5.76441435353708 LTS-033 chr2 95537183 95952641 415459 * c(TEKT4, PROM2, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.453 1 NA 1.09846323199164 407 0.263006189144392 4 4 0 -5.76447676544573 LTS-033 chr2 95952642 113094793 17142152 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR3127, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, ACTR1B, TXNDC9, MERTK, ARID5A, EDAR, TBC1D8, GPR45, MGAT4A, CNGA3, NMS, LYG1, MITD1, FBLN7, TRIM43, TMEM182, COX5B, LINC01102, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, LONRF2, CCDC138, DUSP2, VWA3B, CREG2, ANKRD23, LINC00116, FHL2, SNRNP200, NCAPH, TMEM131, NA NA NA NA NA NA NA NA NA LTS-033 LYG2, UNC50, CNNM4, CNNM3, SULT1C4, RNF149, LINC01114, LOC285000, STARD7-AS1, PLGLA, RGPD4, KCNIP3, KIAA1211L, SH3RF3, IL1R1, INPP4A, ANKRD36, ZC3H6, SLC9A4, AFF3, LIMS1, ASTL, SULT1C3, NPAS2, NPHP1, COA5, FAHD2A, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, SEMA4C, ACOXL, CNOT11, TMEM127, KANSL3, STARD7, ANKRD36B, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, TRIM43B, RGPD3, SLC9A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SULT1C2, SNORD89, BUB1, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, IL1R2, MALL, PDCL3, C2orf49, UXS1, TSGA10, LMAN2L, NCK2, C2orf40, ZC3H8, ST6GAL2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, FER1L5, IL1RL1, NEURL3, CIAO1, TGFBRAP1, MAP4K4, CHST10, GCC2, EIF5B) 0.417119486802852 192 0.120142409317357 1.05506291004945 10810 0.320996925551267 4 2 2 -6.8638168230387 LTS-033 NA NA NA NA LTS-033 chr2 113094794 113096741 1948 * ZC3H6 0 1 NA 1.12883946102762 19 0.201843405227711 4 4 0 -5.76443872721281 LTS-033 chr2 113096742 113779966 683225 * c(TTL, CKAP2L, IL36B, IL37, IL36A, IL1A, IL1B, ZC3H6, FLJ42351, IL36G, SLC20A1, RGPD8, POLR1B, CHCHD5) 0.340665961243126 13 0.189504448225987 1.01819758929261 805 0.380060764875004 4 3 1 -6.7497851864237 LTS-033 chr2 113779967 113785202 5236 * IL36B 0.475 1 NA 1.07673278344962 21 0.200527886672486 4 4 0 -5.76442934163402 LTS-033 chr2 113785203 132201862 18416660 * c(RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, LOC100499194, MIR4783, MIR4782, ACTR3, MAP3K2, RABL2A, TUBA3E, RPL23AP7, CNTNAP5, FAM168B, C2orf76, TMEM37, CBWD2, WTH3DI, DBI, C1QL2, FOXD4L1, CFAP221, EN1, AMER3, ERCC3, CLASP1, PSD4, NIFK-AS1, PTPN18, IL36RN, IL36B, GLI2, BIN1, GPR17, MED15P9, TFCP2L1, GYPC, CYP27C1, GPR148, IL1RN, INHBB, WASH2P, DPP10-AS1, LOC389033, LINC01120, NOC2LP2, LINC01191, FAR2P1, LOC440910, NA NA NA NA NA NA NA NA NA LTS-033 POTEE, MYO7B, ARHGEF4, INSIG2, POLR2D, CCDC93, PLEKHB2, STEAP3, WDR33, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, DPP10, EPB41L5, PTPN4, RALB, SCTR, POTEI, CFC1B, POTEJ, FAM138B, PAX8-AS1, TSN, POTEF, PAX8, TMEM185B, SAP130, MZT2B, SLC35F5, TMEM177, AMMECR1L, RAB6C, CCDC115, NIFK, IL1F10, DDX11L2, SFT2D3, LINC01101, MARCO, DDX18, CCDC74B, IMP4, HS6ST1) 0.439356424374267 155 0.0777014756162656 1.08675464392136 7278 0.395955341945947 4 2 2 -6.836702361767 LTS-033 NA NA NA NA LTS-033 chr2 132201863 132201889 27 * NOC2LP2 0.343 1 NA 2.348 1 NA NA NA NA NA LTS-033 chr2 132201890 132287677 85788 * c(MIR4784, TUBA3D, LOC150776, NOC2LP2, MZT2A, CCDC74A) 0.257514657483474 5 0.10917325679854 1.01271000444194 231 0.339029522779385 3 3 0 -6.73823227122487 LTS-033 chr2 132287678 132290433 2756 * CCDC74A NA 0 NA 0.556764756388244 40 0.492625534567274 1 NA NA -5.76450117093269 LTS-033 chr2 132290434 133014678 724245 * c(MIR663B, C2orf27A, C2orf27B, ANKRD30BL, CCDC74A) 0.325945816835774 8 0.074506830942826 1.20688564975753 48 0.371354793338474 5 4 1 -6.75920326468141 LTS-033 chr2 133014679 133175304 160626 * c(GPR39, ANKRD30BL) 0.485 1 NA 1.15331776996358 27 0.132771519360427 4 4 0 -5.77974563340979 LTS-033 chr2 133175305 165539112 32363808 * c(TANK, CCNT2-AS1, LOC100144595, ZEB2-AS1, MIR3679, LOC100507600, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, NXPH2, FMNL2, GALNT13, LYPD1, ACMSD, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DARS, DPP4, FAP, PLA2R1, RAB3GAP1, UBXN4, R3HDM1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GPR39, GRB14, BAZ2B, HNMT, SPOPL, NCKAP5, ITGB6, RBM43, KCNJ3, KIF5C, RND3, NA NA NA NA NA NA NA NA NA LTS-033 LCT, TEX41, LY75, MIR128-1, MCM6, MGAT5, NEB, NR4A2, ORC4, LRP1B, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, YY1P2, MARCH7, TNFAIP6, PABPC1P2, CACNB4, CXCR4, GTDC1, MAP3K19, THSD7B, TMEM163, ZRANB3, PKP4, TANC1, KYNU, ACVR1, KCNH7, CCNT2, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.442289161284552 143 0.0905074360562893 1.08183272314721 10900 0.28815257357839 4 2 2 -6.8496075448518 LTS-033 NA NA NA NA LTS-033 chr2 165539113 165542581 3469 * COBLL1 NA 0 NA 1.64206513168012 69 0.509576475682973 8 NA NA -5.76442682829967 LTS-033 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.153 1 NA NA NA NA NA LTS-033 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.459995014976028 59 0.0677858861331359 1.10619664455665 3400 0.550581091295133 4 2 2 -7.07724192595919 LTS-033 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.989 1 NA NA NA NA NA LTS-033 chr2 170366321 183291523 12925203 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, NA NA NA NA NA NA NA NA NA LTS-033 EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.446045378055426 191 0.0960942582863988 1.04931145998245 10841 0.272249715059729 4 2 2 -7.00410993193888 LTS-033 NA NA NA NA LTS-033 chr2 183291524 183291596 73 * PDE1A NA 0 NA 1.346 1 NA NA NA NA NA LTS-033 chr2 183291597 190732692 7441096 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, FRZB, SLC40A1, ITGAV, FSIP2, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.452524755341379 49 0.0413712760619394 1.12417215449624 3402 0.487686584176826 4 2 2 -7.39147170458469 LTS-033 chr2 190732693 190738243 5551 * PMS1 NA 0 NA 0.825 1 NA NA NA NA NA LTS-033 chr2 190738244 202901910 12163667 * c(LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, CLK1, TYW5, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, PLCL1, PMS1, PPIL3, MFSD6, STRADB, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, TRAK2, NA NA NA NA NA NA NA NA NA LTS-033 BOLL, STAT1, STAT4, C2orf47, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.437404789530051 92 0.089640578697705 1.01217684246324 6995 0.446749896822295 4 2 2 -7.0122082302938 LTS-033 NA NA NA NA LTS-033 chr2 202901911 202939654 37744 * c(KIAA2012, FZD7) 0.47 1 NA 1.16956493037981 39 0.170307236064327 5 5 0 -5.76786211262587 LTS-033 chr2 202939655 203631445 691791 * c(SNORD11B, KIAA2012, FAM117B, NOP58, BMPR2, SNORD11, SNORD70, SUMO1) 0.288311422418946 9 0.252367181789639 1.04103455149016 591 0.37494757258531 4 3 1 -6.77852206975415 LTS-033 chr2 203631446 203631556 111 * FAM117B 0.48 1 NA 0.816308524768274 3 0.229301112077547 2 2 0 -5.76441255347738 LTS-033 chr2 203631557 203826688 195132 * c(ICA1L, FAM117B, WDR12, CARF) 0.471175383404418 3 0.0217025344142107 0.98809942001627 311 0.218600986473554 4 2 2 -9.77724316297651 LTS-033 chr2 203826689 216300802 12474114 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, ABCA12, SNORD51, GPR1, UNC80, CPS1-IT1, ICOS, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, VWC2L, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA LTS-033 NDUFS1, INO80D, CYP20A1, PTH2R, ZDBF2, BARD1, RPE, SNORA41, RAPH1, NBEAL1, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, CD28) 0.448224616791673 115 0.0773506464220367 1.08443870556177 7149 0.350853507206356 4 2 2 -6.90133311341474 LTS-033 NA NA NA NA LTS-033 chr2 216300803 220331265 4030463 * c(LOC100129175, MIR3131, ABCB6, ARPC2, SPEG, ZFAND2B, AAMP, CRYBA2, PKI55, SLC23A3, LINC00608, GPBAR1, CYP27A1, DES, DNPEP, CFAP65, PNKD, CNPPD1, STK36, RUFY4, DNAJB2, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, RESP18, MIR153-1, MIR26B, MIR375, SMARCAL1, PRKAG3, FEV, ANKZF1, MREG, PECR, MARCH4, USP37, PTPRN, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, NA NA NA NA NA NA NA NA NA LTS-033 VIL1, WNT6, XRCC5, ZNF142, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, CDK5R2, CNOT9, TMEM169, TTLL4) 0.43574975955794 76 0.0828620360451266 1.0343963545829 5251 0.484268573966636 4 2 2 -6.83514309965778 LTS-033 NA NA NA NA LTS-033 chr2 220331266 224866576 4535311 * c(MIR4268, MIR3132, FARSB, SPEG, STK11IP, MOGAT1, AP1S3, SGPP2, TMEM198, CCDC140, EPHA4, ACSL3, OBSL1, KCNE4, GMPPA, INHA, PAX3, SERPINE2, ASIC4, WDFY1, SLC4A3, MRPL44, SCG2, CHPF) 0.444046033942525 20 0.0461711917473268 1.10111384353624 2087 0.659826819879585 4 2 2 -7.09217799943579 LTS-033 chr2 224866577 225422410 555834 * c(SERPINE2, FAM124B, CUL3) 0 1 NA 1.07365390359525 242 0.37903254935162 4 4 0 -5.76520833769427 LTS-033 chr2 225422411 227958946 2536536 * c(MIR4439, MIR5702, COL4A4, IRS1, DOCK10, NYAP2, LOC646736, RHBDD1, CUL3) 0.375237781829509 12 0.212060383053049 1.07304537396237 922 0.301182240611592 4 3 1 -6.74617915799287 LTS-033 chr2 227958947 227973193 14247 * COL4A4 0.478 1 NA 1.05724445013127 37 0.268300347701185 4 4 0 -5.76454696247531 LTS-033 chr2 227973194 230272084 2298891 * c(MIR5703, COL4A3, COL4A4, DAW1, AGFG1, PID1, C2orf83, MFF, CCL20, LOC654841, TM4SF20, SPHKAP, SLC19A3, DNER) 0.446885021924478 43 0.115687692964433 1.07266129072808 1243 0.275148496662421 4 2 2 -6.8095634946737 LTS-033 chr2 230272085 230282724 10640 * DNER NA 0 NA 0.953 1 NA NA NA NA NA LTS-033 chr2 230282725 243037218 12754494 * c(PP14571, LOC100286922, MIR1471, BOK-AS1, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, NEU4, SPATA3, FBXO36, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, DTYMK, AGXT, TIGD1, LOC200772, PASK, ATG4B, SH3BP4, NA NA NA NA NA NA NA NA NA LTS-033 ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, HTR2B, ESPNL, SP110, ECEL1P2, SPATA3-AS1, INPP5D, RBM44, AQP12A, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, ANO7, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 UGT1A3, KIF1A, ATG16L1, PPP1R7, USP40, HJURP, HES6, ACKR3, PSMD1, RNPEPL1, PTMA, SNORD20, SAG, GAL3ST2, RAB17, LOC643387, PRR21, PRSS56, COPS7B, AQP12B, SNORA75, BOK, SP100, SPP2, SCARNA6, SCARNA5, D2HGDH, LOC728323, TRPM8, MLPH, IQCA1, C2orf54, ARMC9, EFHD1, ILKAP, ITM2C, ING5, MGC16025, DGKD, PER2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.439294288179259 393 0.0934271260158296 1.03109970293028 12302 0.425752233185427 4 2 2 -6.94623515357215 LTS-033 NA NA NA NA LTS-033 chr3 239351 361508 122158 * CHL1 0.447 1 NA 1.02010871575945 9 0.189907214186297 4 4 0 -5.77426782833829 LTS-033 chr3 361509 4494745 4133237 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.366735225999926 27 0.153357634640614 0.994958441343226 956 0.325700527956172 3 2 1 -6.83337559978436 LTS-033 chr3 4494746 4508681 13936 * SUMF1 NA 0 NA 0.756 1 NA NA NA NA NA LTS-033 chr3 4508682 5253052 744371 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.422118216563168 9 0.0517110024828157 0.858445243048442 644 0.205438951221099 2 1 1 -6.87478641303342 LTS-033 chr3 5253053 5255026 1974 * EDEM1 NA 0 NA 0.957 1 NA NA NA NA NA LTS-033 chr3 5255027 8809157 3554131 * c(LMCD1-AS1, MIR4790, GRM7, LINC00312, LMCD1, OXTR, SSUH2, CAV3, EDEM1) 0.444411389945882 9 0.0328396778980008 1.01575999038506 554 0.209297332640344 4 2 2 -7.67251766964298 LTS-033 chr3 8809158 8809163 6 * OXTR NA 0 NA 0.756 1 NA NA NA NA NA LTS-033 chr3 8809164 20027410 11218247 * c(MIR885, GHRLOS, MKRN2OS, FGD5P1, SRGAP3-AS3, MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, ARPC4-TTLL3, MIR4791, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, GALNT15, KCNH8, CHCHD4, METTL6, TAMM41, IL17RE, PP2D1, EFHB, CPNE9, FGD5, CIDECP, DAZL, FANCD2, FBLN2, CAND2, RFTN1, NUP210, PLCL2, ANKRD28, CAPN7, MKRN2, THUMPD3, HACL1, TTLL3, LSM3, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, HRH1, LOC339862, NA NA NA NA NA NA NA NA NA LTS-033 COL6A4P1, TPRXL, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, CCDC174, GHRL, PPARG, SETD5, TMEM40, EMC3, BRK1, RAD18, RAB5A, RAF1, RPL32, SATB1, CIDEC, SEC13, RBSN, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, BTD, MIR563, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, COLQ, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, EAF1, OXNAD1, SH3BP5, VGLL4, TBC1D5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TATDN2, SRGAP3, IQSEC1) 0.402358938718441 196 0.111621648610446 0.91534530985808 8979 0.241313905452611 3 2 1 -6.80187767916498 LTS-033 NA NA NA NA LTS-033 chr3 20027411 20053837 26427 * PP2D1 NA 0 NA 0.605554782513163 39 0.120297522531121 1 NA NA -5.76550445910059 LTS-033 chr3 20053838 20081505 27668 * character(0) NA 0 NA 0.96 1 NA NA NA NA NA LTS-033 chr3 20081506 44640783 24559278 * c(ACVR2B-AS1, PDCD6IP, KRBOX1, MIR548AC, MIR4792, MIR4442, SNRK-AS1, SGO1-AS1, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, LRRC3B, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, CTNNB1, SGO1, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, NKIRAS1, NA NA NA NA NA NA NA NA NA LTS-033 ENTPD3-AS1, ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, ACAA1, C3orf35, GADL1, ZNF860, ZNF445, ITGA9, TOPAZ1, ZNF662, VENTXP7, RPSA, MIR128-2, MIR138-1, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, DYNC1LI1, SS18L2, PLCD1, SNRK, CMTM6, SLC25A38, ULK4, OXSM, ANO10, NGLY1, ZKSCAN7, SNORA6, HHATL, WDR48, RARB, SNORA62, RPL15, SCN5A, SCN10A, AZI2, TMPPE, THRB-AS1, LINC00693, CSRNP1, GORASP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 STAC, TGFBR2, THRB, TOP2B, FAM198A, UBE2E1, UBE2E2, UBP1, VIPR1, ZNF385D, EOMES, POMGNT2, DCLK3, CCK, KAT2B, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SLC4A7, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.400531323352903 173 0.11254945261906 0.931777137326905 12123 0.375889052431632 3 2 1 -6.73902889688303 LTS-033 NA NA NA NA LTS-033 chr3 44640784 46623760 1982977 * c(LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, TMEM42, SACM1L, EXOSC7, LARS2, TMEM158, XCR1, LTF, ZDHHC3, LZTFL1, SLC6A20, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2, ZNF502) 0.379019678170961 56 0.138522683219153 0.872395121952979 2981 0.240434473858361 3 2 1 -6.84469854168917 LTS-033 chr3 46623761 46623906 146 * TDGF1 NA 0 NA 0.94 1 NA NA NA NA NA LTS-033 chr3 46623907 47048810 424904 * c(LOC100132146, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, PRSS50, PRSS42, PRSS45, MYL3, PTH1R, TDGF1) 0.425634925035795 26 0.0338971294450634 0.990584633450925 870 0.257171493658177 4 2 2 -6.94225374734849 LTS-033 chr3 47048811 47048897 87 * NBEAL2 NA 0 NA 0.954 1 NA NA NA NA NA LTS-033 chr3 47048898 54354484 7305587 * c(SNORD19B, LINC00696, NRADDP, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, NA NA NA NA NA NA NA NA NA LTS-033 STAB1, NBEAL2, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, GNL3, AMT, GNAI2, GNAT1, FBXW12, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, C3orf18, SHISA5, ZMYND10, TEX264, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, TNNC1, UBA7, USP4, UQCRC1, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.412621523392352 137 0.102633967160555 0.903513182834798 14901 0.206158046008436 3 2 1 -6.89039102904599 LTS-033 NA NA NA NA LTS-033 chr3 54354485 56592860 2238376 * c(MIR3938, CACNA2D3-AS1, ERC2, CCDC66, CACNA2D3, LRTM1, ERC2-IT1, WNT5A, ESRG) 0.40835105585431 12 0.133389694527203 1.02317687168831 516 0.271262338367497 4 2 2 -6.81319126748609 LTS-033 chr3 56592861 56763001 170141 * c(FAM208A, CCDC66, ARHGEF3) 0.448104423860767 13 0.0497734611605164 0.797483556286418 360 0.201367074114922 2 1 1 -7.11343397136466 LTS-033 chr3 56763002 56763007 6 * ARHGEF3 NA 0 NA 1.007 1 NA NA NA NA NA LTS-033 chr3 56763008 59033091 2270084 * c(ARHGEF3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, APPL1, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, ABHD6, SLMAP, ACOX2, HESX1) 0.417519740163248 36 0.106373775709665 0.9020721441562 2685 0.225795554637587 3 2 1 -6.80188952261189 LTS-033 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 1.812 1 NA NA NA NA NA LTS-033 chr3 59035205 65415305 6380101 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.380558106219578 22 0.131009335115655 1.01004450042606 1734 0.373273331810275 3 2 1 -6.88809991746361 LTS-033 chr3 65415306 74315580 8900275 * c(MIR1284, MIR3136, MIR4272, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.406074506247039 74 0.0927835986939371 0.928867966838299 2634 0.286081057011881 3 2 1 -6.7489455731495 LTS-033 chr3 74315581 74344356 28776 * CNTN3 0.373 1 NA 0.959487481038217 17 0.134208573408969 3 3 0 -5.76492523245134 LTS-033 chr3 74344357 74419157 74801 * CNTN3 NA 0 NA 0.969236274581571 65 0.172330354150215 3 NA NA -5.76608461062853 LTS-033 chr3 74419158 74420309 1152 * CNTN3 NA 0 NA 1.2 1 NA NA NA NA NA LTS-033 chr3 74420310 75785475 1365166 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.351497350201689 69 0.087492294143695 1.37656937334051 199 0.790058381340647 7 5 2 -6.75631041330844 LTS-033 chr3 75785476 75785525 50 * ZNF717 NA 0 NA 0.674 1 NA NA NA NA NA LTS-033 chr3 75785526 87308617 11523092 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, VGLL3, LINC00971, ROBO1, ROBO2) 0.34325262240206 113 0.102152471190947 1.00629763147518 1183 0.337362264508463 4 3 1 -7.13242672676175 LTS-033 chr3 87308618 90283666 2975049 * c(EPHA3, C3orf38, HTR1F, POU1F1, ZNF654, CGGBP1) NA 0 NA 0.943966440656822 637 0.250849737571178 3 NA NA -5.76575018765681 LTS-033 chr3 93591838 94225007 633170 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.356 1 NA 0.949880743785402 353 0.240539038153621 3 3 0 -5.76554009926886 LTS-033 chr3 94225008 130113792 35888785 * c(ZBTB11-AS1, FAM86JP, LOC100129550, ZBTB20-AS1, MTHFD2P1, MIR548I1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MYLK-AS1, TMCC1-AS1, ISY1-RAB43, MIR4796, MIR4446, COX17, MIR5002, MIR5092, ALDH1L1-AS2, CFAP44-AS1, ALDH1L1-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, ALDH1L1, PDIA5, ADCY5, HHLA2, FSTL1, FILIP1L, MGLL, TXNRD3, OSBPL11, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, TPRA1, UROC1, NA NA NA NA NA NA NA NA NA LTS-033 FAM172BP, RPL32P3, H1FOO, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, ROPN1B, C3orf22, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, DNAJB8, GPR156, CHST13, KBTBD12, DRD3, ALG1L, GABRR3, HACD2, TIGIT, USF3, ALCAM, COPG1, MYH15, TMCC1, PLXND1, LINC01565, ZDHHC23, LINC00879, NUP210P1, COL6A5, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, GATA2, OR5K1, OR5H1, FAM162A, SEC22A, ZBTB11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MORC1, GOLGB1, GP9, GPR15, TUSC7, LINC00636, EPHA6, DNAJB8-AS1, RABL3, SLC9C1, PDCL3P4, ILDR1, ACAD9, KLF15, GTPBP8, TAGLN3, GSK3B, GTF2E1, SEC61A1, HCLS1, HGD, RAB43, H1FX-AS1, DUBR, TMPRSS7, CD200R1L, LNP1, CFAP100, ITGB5, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, MCM2, CD200, MYLK, NDUFB4, ARGFX, PODXL2, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, PLXNA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SEMA5B, WDR5B, PARP14, GRAMD1C, ROPN1, SIDT1, TRMT10C, SLC41A3, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, IFT122, TBC1D23, CFAP44, EAF2, CLDND1, MUC13, HMCES, NIT2, POGLUT1, BBX, PCNP, SENP7, ISY1, HEG1, KIAA1257, ARHGAP31, CCDC191, KIAA1524, RHO, EEFSEC, RPL24, RPN1, POPDC2, NFKBIZ, ATG3, TMEM30CP, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLC15A2, LINC00488, SNORA7B, MIR548A3, MIR567, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR568, TRH, FAM86HP, UPK1B, UMPS, CNBP, ZNF80, ZNF148, RAB7A, OR5H6, OR5H2, ZXDC, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, EFCC1, NAA50, ABTB1, OR5AC2, PARP9, ARL6, CHCHD6, CMSS1, SLC12A8, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, RUVBL1, CBLB, B4GALT4, SNX4, NR1I2, MBD4, H1FX, MAATS1, KALRN, PHLDB2, LOC90246, EFCAB12, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.399102075962358 352 0.105752039148159 0.924565632778928 20934 0.313074604785112 3 2 1 -6.77659500091047 LTS-033 NA NA NA NA LTS-033 chr3 130113793 141011208 10897416 * c(NPHP3-ACAD11, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, PISRT1, NUDT16P1, DZIP1L, EPHB1, MRAS, DNAJC13, COL6A5, ANAPC13, ARMC8, NPHP3, ATP2C1, TRIM42, ASTE1, PIK3R4, KY, LOC339874, NME9, NPHP3-AS1, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, IL20RB, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, MRPS22, SRPRB, RBP1, RBP2, BPESC1, NA NA NA NA NA NA NA NA NA LTS-033 RYK, CLSTN2, SLCO2A1, TMEM108, FOXL2, SNORA58, TF, PRR23A, NEK11, UBA5, C3orf36, CEP63, CEP70, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, SPSB4, PXYLP1, COPB2) 0.395663141278926 93 0.11307977093895 0.963747780890523 6678 0.254930143305339 3 2 1 -6.80892431877365 LTS-033 NA NA NA NA LTS-033 chr3 141011209 189582156 48570948 * c(MIR944, WWTR1-AS1, LOC100128164, LOC100131635, MIR1224, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, NAALADL2-AS3, HLTF-AS1, ABCC5-AS1, TPRG1-AS2, KCNAB1-AS2, KCNAB1-AS1, ADIPOQ-AS1, LINC01014, SLC9A9-AS1, LOC101243545, ALG3, KCNMB2, IGF2BP2, PDCD10, RNF13, TM4SF18, RPL39L, MED12L, CLRN1-AS1, AP2M1, NA NA NA NA NA NA NA NA NA LTS-033 CLCN2, AADAC, DNAJC19, OTOL1, FAM131A, ERICH6, GRK7, RTP1, CP, CPA3, CPB1, CRYGS, TTC14, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, DGKG, SPTSSB, DHX36, HTR3C, AGTR1, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, AADACP1, EPHB3, C3orf58, ETV5, MECOM, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, U2SURP, VPS8, ZBTB38, LOC253573, NAALADL2, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 GPR160, FETUB, LAMP3, KCNMB3, SERP1, GOLIM4, SLC9A9, HTR3E, IGSF10, C3orf33, C3orf70, TPRG1, TRIM59, GPR171, GYG1, SCHIP1, HRG, CCDC39, LINC00880, EHHADH-AS1, LPP-AS2, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, NMRAL1P1, RTP2, SOX2-OT, IL12A, KNG1, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, FLJ42393, LPP, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, ATP1B3, CLDN11, P2RY1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, DNAJB11, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, DCUN1D1, POLR2H, XRN1, ATR, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, PLSCR2, PSMD2, PLSCR4, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RTP4, MAGEF1, TRA2B, ZMAT3, TMEM14EP, LINC01330, IGF2BP2-AS1, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, FNDC3B, SIAH2, ST6GAL1, P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SST, SCARNA7, SNORA81, SNORD66, MIR551B, MIR569, TERC, TFDP2, THPO, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, ZIC4, HPS3, ACTRT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 GFM1, ACTL6A, TP63, CHRD, B3GALNT1, TNFSF10, GMPS, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, SLC33A1, PXYLP1, EGFEM1P, ADIPOQ, CAMK2N2, CHST2, RNF7, ECE2, TSC22D2, P2RY14) 0.400250263961956 345 0.111442011639269 0.926528575934005 23282 0.266890722500102 3 2 1 -6.79115336409033 LTS-033 NA NA NA NA LTS-033 chr3 189582157 189584434 2278 * TP63 NA 0 NA 1.015 1 NA NA NA NA NA LTS-033 chr3 189584435 193272908 3688474 * c(SNAR-I, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, OSTN, ATP13A5, IL1RAP, P3H2, HRASLS, GMNC, ATP13A4, MGC2889, TP63, CLDN1) 0.416877008142986 45 0.0864868939682934 0.993854582582263 1589 0.538216865792407 3 2 1 -6.80105740921058 LTS-033 chr3 193272909 193310897 37989 * character(0) NA 0 NA 0.88 1 NA NA NA NA NA LTS-033 chr3 193310898 195306436 1995539 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, ATP13A3, TMEM44) 0.385948786294712 36 0.094022299786502 0.899781133160503 1361 0.249068709869443 3 2 1 -6.76967391408956 LTS-033 chr3 195306437 195345045 38609 * APOD NA 0 NA 1.778 1 NA NA NA NA NA LTS-033 chr3 195345046 195473784 128739 * c(MUC20, MUC4, MIR570, SDHAP2) 0.363225583540671 20 0.0917871680058074 1.39367376112597 173 0.491409226709444 6 4 2 -6.74688898313578 LTS-033 chr3 195473785 195476016 2232 * MUC4 NA 0 NA 1.82951698410256 15 0.438704011292135 9 NA NA -5.76441432882382 LTS-033 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 0.844 1 NA NA NA NA NA LTS-033 chr3 195477782 195512050 34269 * MUC4 0 1 NA 0.950819020557346 103 0.33712919883428 3 3 0 -5.76444613551388 LTS-033 chr3 195512051 195711016 198966 * c(TNK2, SDHAP1, MUC4) 0.187789109468794 9 0.153092927480156 0.92551623894467 277 0.266637509164334 4 4 0 -6.79818926568432 LTS-033 chr3 195711017 195938177 227161 * c(ZDHHC19, SDHAP1, LINC00885, TFRC) 0.5 1 NA 0.86447515921177 185 0.222248336001564 3 3 0 -5.78250166730129 LTS-033 chr3 195938178 197426074 1487897 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, CEP19, RUBCN) 0.410820836278729 23 0.13540809347545 0.856058661974745 2001 0.20015205073342 2 1 1 -6.91423252958815 LTS-033 chr3 197426075 197770512 344438 * c(RPL35A, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) NA 0 NA 0.882189162969096 587 0.195131054964044 3 NA NA -5.78441396547304 LTS-033 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.13 1 NA 1.48622305364165 14 0.510684285601622 7 7 0 -5.76445140221911 LTS-033 chr4 60336 86470 26135 * c(ZNF595, ZNF718) 0.331799081560178 2 0.124450793488832 1.32605925563139 25 0.593851642528109 7 5 2 -6.7421274715235 LTS-033 chr4 86471 86679 209 * c(ZNF595, ZNF718) NA 0 NA 0.727 1 NA NA NA NA NA LTS-033 chr4 86680 2097770 2011091 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MAEA, PCGF3, SPON2, TACC3, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZNF876P, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, ABCA11P, MFSD7, TMEM175, CTBP1-AS2, TMEM129) 0.424234836447663 41 0.0557227019462904 0.87231560922472 3364 0.20320642761083 3 2 1 -7.0539893368143 LTS-033 chr4 2097771 2129838 32068 * POLN NA 0 NA 0.702 1 NA NA NA NA NA LTS-033 chr4 2129839 3225858 1096020 * c(MIR4800, HTT-AS, MFSD10, MXD4, ADD1, GRK4, HTT, NOP14-AS1, POLN, CFAP99, ZFYVE28, RNF4, SH3BP2, TNIP2, HAUS3, NOP14, FAM193A) 0.419681465500836 30 0.118561880637201 0.729844370221187 1765 0.179794105341809 2 1 1 -6.83241947835397 LTS-033 chr4 3225859 3227358 1500 * HTT NA 0 NA 0.901 1 NA NA NA NA NA LTS-033 chr4 3227359 25767093 22539735 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, NA NA NA NA NA NA NA NA NA LTS-033 CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, DOK7, LINC00955, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HTT, HGFAC, HMX1, MSANTD1, FAM86EP, KCNIP4-IT1, USP17L6P, USP17L9P, LRPAP1, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, RGS12, AFAP1, S100P, NCAPG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.43813802511865 294 0.0802645653764011 0.789525677882601 9637 0.234768589582597 2 1 1 -6.84775258141961 LTS-033 NA NA NA NA LTS-033 chr4 25767094 25769121 2028 * SEL1L3 NA 0 NA 0.594 1 NA NA NA NA NA LTS-033 chr4 25769122 48887271 23118150 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, PTTG2, LIAS, ARAP2, CNGA1, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, PGM2, NA NA NA NA NA NA NA NA NA LTS-033 C4orf19, TBC1D19, CHRNA9, N4BP2, ATP10D, NWD2, SLAIN2, STIM2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, CCKAR, PHOX2B, FAM114A1) 0.425638963925012 120 0.117315769809256 0.759229513958454 8208 0.853333617286314 2 1 1 -6.76327723689919 LTS-033 NA NA NA NA LTS-033 chr4 48887272 49064107 176836 * c(OCIAD2, CWH43) NA 0 NA 0.740121078489702 123 0.170685439114422 2 NA NA -5.77504305733456 LTS-033 chr4 52709193 52938243 229051 * c(SPATA18, DCUN1D4, LRRC66, SGCB) 0.402 1 NA 0.97214091695895 343 0.229105508255506 3 3 0 -5.76785515439823 LTS-033 chr4 52938244 56238886 3300643 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, DANCR, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.429311988542318 18 0.0423113653051627 0.961215780274497 1340 0.241229400266396 3 2 1 -7.14783717171976 LTS-033 chr4 56238887 62775388 6536502 * c(SRD5A3-AS1, THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, ADGRL3, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, SRD5A3, NOA1, HOPX, CLOCK, CEP135) 0.391416768964347 29 0.0894388912662493 0.88126031828813 1694 0.214426306838896 3 2 1 -7.04336371547181 LTS-033 chr4 62775389 62778369 2981 * ADGRL3 NA 0 NA 1.126 1 NA NA NA NA NA LTS-033 chr4 62778370 65171001 2392632 * c(ADGRL3, TECRL) 0.441595671718895 15 0.0463302842436266 1.11363569825018 228 0.38939781836513 4 2 2 -7.04905821073492 LTS-033 chr4 65171002 65175534 4533 * TECRL NA 0 NA 0.955 1 NA NA NA NA NA LTS-033 chr4 65175535 69363240 4187706 * c(FTLP10, EPHA5-AS1, CENPC, TMPRSS11B, EPHA5, TECRL, STAP1, GNRHR, TMPRSS11A, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113, UBA6, TMPRSS11GP, TMPRSS11D) 0.362879633598316 38 0.148428872381596 0.94102267467558 1412 0.333401717020373 3 2 1 -6.75941515225876 LTS-033 chr4 69363241 69434316 71076 * UGT2B17 NA 0 NA 0.09068967721873 39 0.113080053570555 0 NA NA -9.9229357705366 LTS-033 chr4 69434317 69512310 77994 * character(0) NA 0 NA 2.203 1 NA NA NA NA NA LTS-033 chr4 69512311 76404504 6892194 * c(CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CSN1S1, CSN2, CSN3, DCK, RASSF6, AFM, AFP, EREG, ALB, RUFY3, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, HTN1, HTN3, JCHAIN, CXCL8, AREG, PRR27, AMTN, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, UGT2B28, PPBP, ODAM, UTP3, UGT2A2, OPRPN, CXCL6, CXCL5, STATH, SULT1E1, BTC, LOC728040, NA NA NA NA NA NA NA NA NA LTS-033 UGT2B4, UGT2B7, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.379924830737595 68 0.109494379288153 0.956761903351577 3603 0.293990801535194 3 2 1 -6.76249228422229 LTS-033 NA NA NA NA LTS-033 chr4 76404505 76404508 4 * RCHY1 NA 0 NA 0.766 1 NA NA NA NA NA LTS-033 chr4 76404509 90856780 14452272 * c(FAM47E, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, FAM13A, CDS1, CXCL13, HPSE, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, TIGD2, DMP1, DSPP, FGF5, SEC31A, MMRN1, WDFY3, CNOT6L, C4orf22, RCHY1, NAP1L5, GK2, NAAA, COQ2, FAM13A-AS1, GPRIN3, ANXA3, HNRNPD, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, CXCL10, NA NA NA NA NA NA NA NA NA LTS-033 WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PKD2, NUDT9, NUP54, PPEF2, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, KLHL8, SHROOM3, PTPN13, ENOPH1, CXCL11, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, MIR575, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, USO1, HERC3, STBD1, CDKL2, CCNG2, ABCG2, SCARB2, G3BP2, HNRNPDL) 0.389993965061262 142 0.0853256745194234 0.903426499687512 9402 0.235414754291007 3 2 1 -6.94141545399759 LTS-033 NA NA NA NA LTS-033 chr4 90856781 98108652 7251872 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.393351984361694 45 0.0741473621454689 1.00885468315551 1419 0.305721982076849 3 2 1 -6.973645347789 LTS-033 chr4 98108653 148441123 50332471 * c(SNHG8, SCOC-AS1, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LINC01095, LOC100507053, GIMD1, SEC24B-AS1, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, STPG2-AS1, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, CENPE, RRH, PLK4, PRDM5, LSM6, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, ZNF827, MGAT4D, SPATA5, BBS12, NA NA NA NA NA NA NA NA NA LTS-033 FREM3, MMAA, SGMS2, SYNPO2, EDNRA, EGF, EIF4E, ELF2, ENPEP, FABP2, FGF2, HSPA4L, TBC1D9, METAP1, SLC7A11, GAB1, ELMOD2, NPNT, MFSD8, LOC256880, NOCT, PPA2, DAPP1, DKK2, INTU, ZNF330, LINC01091, RPL34-AS1, STPG2, ANK2, GYPA, GYPB, GYPE, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, IL15, LINC01061, C4orf3, MAD2L1, SMAD1, MANBA, MGST2, GUSBP5, MIR302B, MTTP, NDUFC1, NFKB1, CISD2, LEF1, LARP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 EMCN, MYOZ2, PITX2, EXOSC9, GAR1, PCDH18, USP53, POU4F2, OTUD4, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, MAML3, BDH2, INTS12, ANKRD50, RNF150, PCDH10, METTL14, OSTC, IL21, RAP1GDS1, ABCE1, SCOC, RPL34, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UCP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, NAA15, ABHD18, ALPK1, CXXC4, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, TTC29, CASP6, SLC10A7, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, MGARP, PRSS12, LAMTOR3, PDE5A, INPP4B, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.395841502508206 306 0.104760586215909 0.925685497969396 18164 0.637004516740208 3 2 1 -6.7451854711714 LTS-033 NA NA NA NA LTS-033 chr4 148441124 155155728 6714605 * c(MIR3140, MIR4799, MAB21L2, SH3D19, DCLK2, EDNRA, TIGD4, TMEM154, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, PRSS48, NR3C2, GATB, DKFZP434I0714, DCHS2, FBXW7, TMEM184C, RPS3A, SFRP2, TLR2, FAM160A1, ARHGAP10, MND1, FHDC1, SNORD73A, PRMT9, LRBA) 0.397829774052893 40 0.10424384627967 0.883761107830955 2776 0.251659890677576 3 2 1 -6.94774291016924 LTS-033 chr4 155155729 164449273 9293545 * c(MIR3688-1, MIR3688-2, CTSO, C4orf45, RBM46, C4orf46, ETFDH, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY1R, NPY2R, NPY5R, FAM198B, ASIC5, PLRG1, DCHS2, PPID, MARCH1, TMEM144, TMA16, PDGFC, FSTL5, FNIP2, RXFP1, TDO2, MAP9, TKTL2, LRAT, NAF1, RAPGEF2) 0.409469964227687 51 0.0445622983178892 0.954888102493038 3369 0.780077682777273 3 2 1 -6.8086283142068 LTS-033 chr4 164449274 164466824 17551 * MARCH1 0.413 1 NA 0.967870266060439 25 0.42499730195222 3 3 0 -5.76446938947646 LTS-033 chr4 164466825 166263796 1796972 * c(LINC01207, APELA, KLHL2, FAM218A, TRIM60, TMEM192, ANP32C, GK3P, TRIM61, MARCH1, MSMO1) 0.180098341245576 9 0.195196980281743 0.916473921387493 481 0.487476976649503 3 3 0 -6.81222933158702 LTS-033 chr4 166263797 166264119 323 * MSMO1 0.458 1 NA 0.983277681801474 7 0.312518647062707 3 3 0 -5.76441463071876 LTS-033 chr4 166264120 184242947 17978828 * c(CLDN24, MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, ANXA10, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, WWC2-AS2, DCTD, AGA, PALLD, FBXO8, GPM6A, LINC01098, HMGB2, HPGD, FAM92A1P2, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, CLDN22, HPF1, NEIL3, DDX60, TENM3, SH3RF1, SPCS3, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.380250422987795 73 0.1115952235166 0.943201825921211 4300 0.39914098502956 3 2 1 -6.74446140653962 LTS-033 chr4 184242948 186545296 2302349 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3, SNX25, SORBS2) 0.407442951039908 45 0.0735308840494313 0.876362370356602 1871 0.244657830341745 3 2 1 -6.85651978491425 LTS-033 chr4 186545297 190981533 4436237 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.375914373748947 60 0.0960272604303732 0.993017187956573 1287 0.272416077096575 3 2 1 -6.87039624832078 LTS-033 chr4 190981534 190981567 34 * character(0) NA 0 NA 1.819 1 NA NA NA NA NA LTS-033 chr5 140347 163266 22920 * PLEKHG4B 0.49 1 NA 1.02981868526966 69 0.191102399317023 4 4 0 -5.76577576430789 LTS-033 chr5 163267 678224 514958 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.395465681902191 25 0.143850014482678 1.04581918766128 977 0.27610598727078 4 2 2 -6.74517674635769 LTS-033 chr5 678225 712039 33815 * TPPP NA 0 NA 2.571 1 NA NA NA NA NA LTS-033 chr5 712040 796064 84025 * ZDHHC11 0.327680444761126 16 0.0735027210380677 2.20881533745121 84 1.13680401087914 14 10 4 -6.73795024176443 LTS-033 chr5 796065 796090 26 * ZDHHC11 NA 0 NA 0.969 1 NA NA NA NA NA LTS-033 chr5 796091 1081620 285530 * c(LOC100506688, MIR4635, SLC12A7, BRD9, ZDHHC11, NKD2, TRIP13) 0.373376059316316 23 0.134115489138568 1.1350073056666 515 0.450770418959969 4 3 1 -6.74900282571865 LTS-033 chr5 1081621 1081668 48 * SLC12A7 0.491 1 NA 1.05 1 NA NA NA NA NA LTS-033 chr5 1081669 38966860 37885192 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAP, UGT3A2, ADAMTS16, DNAH5, RANBP3L, CCT5, NA NA NA NA NA NA NA NA NA LTS-033 PDZD2, FBXL7, ICE1, AMACR, RICTOR, LINC01018, NIPBL, RAI14, GDNF, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, IL7R, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, ANKH, PRLR, PRDM9, RAD1, GOLPH3, LINC01021, NIPBL-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, NUP155) 0.450422520663028 244 0.0818364627677194 1.08223060590966 11949 0.35550952268541 4 2 2 -6.91567442580916 LTS-033 NA NA NA NA LTS-033 chr5 38966861 38967285 425 * RICTOR NA 0 NA 0.818 1 NA NA NA NA NA LTS-033 chr5 38967286 44809162 5841877 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6) 0.422152259229475 29 0.146115818829842 1.0229769078942 2831 0.287915779127646 4 2 2 -6.92276055118744 LTS-033 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.15703268614529 149 0.247851697947755 4 NA NA -5.79169754819027 LTS-033 chr5 49692017 49694583 2567 * EMB 0.46 1 NA 0.976798010304609 47 0.31152537786604 3 3 0 -5.76443688461294 LTS-033 chr5 49694584 58151905 8457322 * c(MIR449C, MIR5687, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, PELO, DHX29, DDX4, ARL15, MIR449A, LOC642366, GPBP1, MIR449B, MIR581, PARP8, ANKRD55, PLPP1, HSPB3) 0.443664247692047 104 0.0948047042370879 1.01353870777325 3630 0.284120627483584 4 2 2 -7.1644375531732 LTS-033 chr5 58151906 58152012 107 * character(0) 0 1 NA 1.5644210213329 4 1.1663074208801 7 7 0 -5.76441013472205 LTS-033 chr5 58152013 61000506 2848494 * c(ERCC8, PART1, C5orf64, PDE4D, DEPDC1B, ZSWIM6, SMIM15, ELOVL7, NDUFAF2) 0.377990207666611 16 0.183960038685942 1.05790119313047 902 0.321946462301341 4 3 1 -6.76298879076872 LTS-033 chr5 61000507 61642937 642431 * c(C5orf64, KIF2A) 0.465 1 NA 0.983597096403881 53 0.178318805841366 3 3 0 -5.79221009857421 LTS-033 chr5 61642938 68849879 7206942 * c(LRRC70, FAM159B, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, DIMT1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, KIF2A, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, TRAPPC13, CCNB1, MRPS36) 0.432424732453403 62 0.118873708142603 1.03832099229461 3675 0.315515454080692 4 2 2 -6.87507779647421 LTS-033 chr5 68849880 68850164 285 * OCLN NA 0 NA 2.412 1 NA NA NA NA NA LTS-033 chr5 68850165 69373289 523125 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 1.45549329375751 45 0.471135537769648 6 NA NA -5.7660847748747 LTS-033 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.003 1 NA NA NA NA NA LTS-033 chr5 69717474 70307196 589723 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.572584171662537 40 0.449576493020846 1 NA NA -5.77781149556426 LTS-033 chr5 70307197 93855502 23548306 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-033 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.44002898857545 226 0.0875103352794836 1.05797161046157 10296 0.432368671065469 4 2 2 -6.89854372179703 LTS-033 NA NA NA NA LTS-033 chr5 93855503 96369185 2513683 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.44639888821799 54 0.0713793910754392 0.994538861422574 2241 0.270405896949661 4 2 2 -7.0892873196388 LTS-033 chr5 96369186 96371142 1957 * character(0) NA 0 NA 1.77763975512056 40 0.498551331487747 8 NA NA -5.76441549362865 LTS-033 chr5 96371143 118965554 22594412 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, NA NA NA NA NA NA NA NA NA LTS-033 FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.449999661957035 157 0.0747172600750827 1.06093607246872 6663 0.345002565171561 4 2 2 -7.02719876371139 LTS-033 NA NA NA NA LTS-033 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 1.32 1 NA NA NA NA NA LTS-033 chr5 118968368 129522229 10553862 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.44821415491797 72 0.06462369706402 1.13141607287423 3279 0.403950187331342 4 2 2 -7.0091521413797 LTS-033 chr5 129522230 132216264 2694035 * c(MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, RAPGEF6, LOC553103, CDC42SE2, CCNI2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.439581434232974 48 0.105126435190615 1.02391575370796 2482 0.549437559953428 4 2 2 -6.8124924386494 LTS-033 chr5 132216265 132224683 8419 * AFF4 0 1 NA 1.02704289650322 45 0.331203381320269 4 4 0 -5.76459246193276 LTS-033 chr5 132224684 134296735 2072052 * c(MIR1289-2, MIR3661, MIR4461, SEC24A, C5orf24, FSTL4, JADE2, AFF4, HSPA4, SAR1B, CDKL3, ZCCHC10, PPP2CA, C5orf15, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.378754873682537 14 0.19464728596635 1.00176840938509 1969 0.257626275390251 3 2 1 -6.81789375256997 LTS-033 chr5 134296736 134331921 35186 * c(CATSPER3, PCBD2) 0.4 1 NA 0.938064804440717 18 0.460114308048107 3 3 0 -5.76441017082321 LTS-033 chr5 134331922 134344711 12790 * CATSPER3 0.48 1 NA 0.98776668263919 14 0.221693432518823 3 3 0 -5.76483601483267 LTS-033 chr5 134344712 134344992 281 * CATSPER3 NA 0 NA 1.135 1 NA NA NA NA NA LTS-033 chr5 134344993 137087498 2742506 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, PITX1, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.437023038877051 41 0.105414871445879 1.11839898344163 1325 0.557511755369868 4 2 2 -6.78316353512131 LTS-033 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.876 1 NA NA NA NA NA LTS-033 chr5 137087505 140050265 2962761 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, TMEM173, IK, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, MATR3, NA NA NA NA NA NA NA NA NA LTS-033 CDC25C, SLC23A1) 0.449431324703752 40 0.101970002501993 1.02327421149338 3922 0.235315225289383 4 2 2 -6.97315231243841 LTS-033 NA NA NA NA LTS-033 chr5 140050266 140053351 3086 * c(DND1, WDR55) 0.492 1 NA 1.03048097671663 49 0.267648806280546 4 4 0 -5.76450187594876 LTS-033 chr5 140053352 140086191 32840 * c(ZMAT2, HARS2, HARS) 0.169490310339525 9 0.203090360294241 1.07078570298577 223 0.234737609263198 5 5 0 -6.74660675183054 LTS-033 chr5 140086192 140168151 81960 * c(ZMAT2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1) 0.497 1 NA 0.969838500749185 31 0.17229663093705 3 3 0 -5.76631464752951 LTS-033 chr5 140168152 140553623 385472 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.422274597945444 35 0.10932631749711 1.02784134052153 1113 0.250434595486799 4 2 2 -6.75856144092981 LTS-033 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.32 1 NA NA NA NA NA LTS-033 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.482 1 NA 0.393582448505946 62 0.192193096674431 0 0 0 -5.76649591814336 LTS-033 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 2.306 1 NA NA NA NA NA LTS-033 chr5 140559822 175477303 34917482 * c(GNPDA1, FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, LOC100505658, MIR4634, MIR378E, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, TNIP1, CDX1, SLU7, CPLX2, FAXDC2, FAM114A2, TCERG1, SPINK5, SOX30, SYNPO, PWWP2A, C1QTNF2, SCGB3A2, C5orf47, PPARGC1B, C5orf58, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, NKX2-5, SLC36A2, SPINK13, CREBRF, NA NA NA NA NA NA NA NA NA LTS-033 JAKMIP2-AS1, PPP1R2P3, FAM71B, PRELID2, SH3RF2, PLAC8L1, RNF145, ADRB2, DIAPH1, DOCK2, DPYSL3, DRD1, SLC26A2, DUSP1, EBF1, STK32A, SLC36A1, FABP6, FAT2, FGF1, ABLIM3, FOXI1, HMGXB3, ARHGAP26, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, PCDHGA12, CCDC69, HAVCR1, CYFIP2, IL17B, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, RELL2, LOC285626, LOC285627, LOC285629, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, NDST1, HTR4, ARSI, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, C5orf46, ARHGEF37, LCP2, SPINK6, MIR103A1, MIR143, MIR146A, MIR218-2, SPINK14, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, PCDH1, PCDHGC3, RPL26L1, DCTN4, PCDH12, PDE6A, LARS, PDGFRB, HMP19, RBM27, NEURL1B, POU4F3, PCDHB18P, SPDL1, THG1L, PPP2R2B, GALNT10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, NMUR2, ERGIC1, TENM2, KCTD16, PCDHB16, HMHB1, RARS, RPS14, ZBED8, GRXCR2, SPINK9, ARAP3, SGCD, RANBP17, SLC6A7, SLIT3, BNIP1, SPARC, SPINK1, SNORA74B, STK10, TAF7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR585, TCOF1, TTC1, CARMN, LOC729080, PCYOX1L, CCNJL, SH3TC2, PANK3, SAP30L, CPEB4, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC25A2, PCDHB19P, THOC3, SPINK7, HAVCR2, SMIM3, STC2, PCDHGB4, ADAM19, FGF18, HDAC3, FCHSD1, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, RNF14, CLINT1, PCDHGA8, CD74, KIAA0141, JAKMIP2) 0.439463995993478 364 0.100935425549102 1.07051041123279 20949 0.348367060112707 4 2 2 -6.87214295552374 LTS-033 NA NA NA NA LTS-033 chr5 175477304 180374817 4897514 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-033 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.454253855429278 137 0.0773034960830053 1.03139760956115 6945 0.291984621838572 4 2 2 -7.06356242485976 LTS-033 NA NA NA NA LTS-033 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.018 1 NA NA NA NA NA LTS-033 chr5 180375294 180429799 54506 * c(BTNL3, BTNL8) NA 0 NA 1.98794878206747 62 0.323087467057523 10 NA NA -5.76455559736763 LTS-033 chr5 180429800 180671029 241230 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM41) 0.409731194785823 11 0.157785988547203 1.02166269914099 497 0.233648322334153 4 2 2 -6.74547841323998 LTS-033 chr5 180671030 180688111 17082 * TRIM52 NA 0 NA 1.054439052965 54 0.215492071742622 4 NA NA -5.76470581300025 LTS-033 chr6 203389 335251 131863 * DUSP22 0.425 1 NA 1.1177161106806 33 0.206249853076164 4 4 0 -5.76528380765128 LTS-033 chr6 335252 8015821 7680570 * c(MIR3691, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4645, ECI2, FARS2, RPP40, HUS1B, SNRNP48, LINC01600, DSP, SERPINB1, PIP5K1P1, F13A1, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, FAM50B, GMDS, LINC01622, LY86-AS1, CAGE1, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, C6orf201, NQO2, NRN1, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, BMP6, BPHL, NA NA NA NA NA NA NA NA NA LTS-033 SSR1, TUBB2A, TXNDC5, RIOK1, RIPK1, PRPF4B, FOXQ1, CDYL, LY86) 0.443727234755204 189 0.0690189176859253 1.03581538233424 4028 0.325954889648006 4 2 2 -7.0219620949391 LTS-033 NA NA NA NA LTS-033 chr6 8015822 9776037 1760216 * c(SCARNA27, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, SLC35B3, BLOC1S5, HULC, EEF1E1) 0 1 NA 1.09676561313858 197 0.352342888217497 4 4 0 -5.76447462583803 LTS-033 chr6 9776038 11094681 1318644 * c(TFAP2A-AS1, ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, C6orf52, MAK, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, TMEM14B, GCM2) 0.30256678514173 10 0.233590548705303 1.0598078430773 994 0.332677068799484 4 3 1 -6.76717279650487 LTS-033 chr6 11094682 11102871 8190 * c(SMIM13, ERVFRD-1) 0.466 1 NA 0.865541283231548 7 0.180756479169917 3 3 0 -5.76536909777333 LTS-033 chr6 11102872 24705835 13602964 * c(TMEM170B, LOC100130357, RANBP9, MIR4639, CAP2, NRSN1, MBOAT1, HDGFL1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SIRT5, RNF144B, GMPR, GPLD1, MYLIP, HIVEP1, ID4, KAAG1, JARID2, NHLRC1, STMND1, CASC15, ERVFRD-1, NEDD9, TBC1D7, NOL7, FAM8A1, DCDC2, TDP2, GFOD1, CDKAL1, ACOT13, PRL, MRS2, ATXN1, MCUR1, KIF13A, SOX4, MIR548A1, TPMT, NBAT1, DEK, ALDH5A1, C6orf62, DTNBP1, ADTRP, CD83, KIAA0319, NA NA NA NA NA NA NA NA NA LTS-033 NUP153) 0.446001351513928 122 0.0635640807277111 1.03128298158907 5109 0.31967690248144 4 2 2 -7.21242707228905 LTS-033 NA NA NA NA LTS-033 chr6 24705836 24840955 135120 * c(GMNN, C6orf62, FAM65B) 0 1 NA 0.927775705524128 229 0.362798497712631 3 3 0 -5.76447709687442 LTS-033 chr6 24840956 29798140 4957185 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA LTS-033 HCG11, BTN2A3P, CARMIL1, ZSCAN31, ZNF192P1, SLC17A1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, ZSCAN12) 0.375427358496709 18 0.156420049949307 1.02970838807117 4823 0.238568497267514 4 3 1 -6.93060637447069 LTS-033 NA NA NA NA LTS-033 chr6 29798141 29855677 57537 * character(0) 0.423 1 NA 0.805537786515066 3 0.396614422329799 2 2 0 -5.76461582079139 LTS-033 chr6 29855678 29910730 55053 * character(0) 0.418308297915761 24 0.0860495202051483 0.928858067674438 68 4.9295051744496 4 2 2 -6.74297058876063 LTS-033 chr6 29910731 29911029 299 * character(0) 0.257 1 NA 0.861843852900668 3 0.567474228489717 3 3 0 -5.76441406569001 LTS-033 chr6 29911030 29913515 2486 * character(0) 0.296671012699991 40 0.0809073385787559 1.00341022426426 62 0.488707457056633 2 2 0 -6.73417947736864 LTS-033 chr6 29913516 29942927 29412 * character(0) 0.409 1 NA 0.865677889834674 5 0.169113866965427 3 3 0 -5.76832735364973 LTS-033 chr6 29942928 31237833 1294906 * character(0) 0.451687776972383 225 0.0481317380358242 1.02392897400452 3260 0.511185375436313 4 2 2 -7.2183102116634 LTS-033 chr6 31237834 31237858 25 * character(0) 0.383 1 NA 0.72 1 NA NA NA NA NA LTS-033 chr6 31237859 31238911 1053 * character(0) 0.325537145914292 11 0.056705298774373 3.56479781687798 34 47.2415371202064 20 14 6 -6.7332783348174 LTS-033 chr6 31238912 31238925 14 * character(0) 0.251 1 NA 0.503 1 NA NA NA NA NA LTS-033 chr6 31238926 31238942 17 * character(0) 0.487 1 NA 0.245 1 NA NA NA NA NA LTS-033 chr6 31238943 31324184 85242 * character(0) 0.449980935832744 28 0.0285090721660175 0.70359211950636 76 0.397009981535221 2 1 1 -7.85014186000905 LTS-033 chr6 31324185 31324194 10 * character(0) 0.397 1 NA 0.465 1 NA NA NA NA NA LTS-033 chr6 31324195 31324911 717 * character(0) 0.258683449712738 9 0.149561395791531 0.674188135044826 19 0.208634995634742 3 3 0 -6.73593608863032 LTS-033 chr6 31324912 31324925 14 * character(0) 0.442 1 NA 0.4 1 NA NA NA NA NA LTS-033 chr6 31324926 31382980 58055 * character(0) 0.469482774811204 8 0.0125214102355012 0.766557764227891 53 0.328173391724991 2 1 1 -12.0790068394518 LTS-033 chr6 31382981 31431060 48080 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-033 chr6 31431061 32017105 586045 * character(0) 0.445903541306561 110 0.0739867873604465 1.00814327616996 3211 0.25314320707012 4 2 2 -6.92876392822858 LTS-033 chr6 32017106 32024600 7495 * character(0) 0.471 1 NA 1.10902314987373 32 0.244673480163178 4 4 0 -5.76442457845872 LTS-033 chr6 32024601 32427918 403318 * character(0) 0.453683117728546 75 0.0628862321831909 1.05891740389971 1369 0.278684116227479 4 2 2 -7.04685283730063 LTS-033 chr6 32427919 32427923 5 * character(0) 0 1 NA 5.128 1 NA NA NA NA NA LTS-033 chr6 32427924 32489940 62017 * HLA-DRB5 0.434087939786192 4 0.0206316908339251 4.91728419484521 55 5.35871784378436 19 10 9 -7.59359160510414 LTS-033 chr6 32489941 32497886 7946 * HLA-DRB5 NA 0 NA 1.073 1 NA NA NA NA NA LTS-033 chr6 32497887 32634405 136519 * c(HLA-DQA1, HLA-DRB5) 0.439776805918396 18 0.0518892737666095 1.41680846767343 209 2.57300510029332 6 3 3 -6.96007876655341 LTS-033 chr6 32634406 32634408 3 * character(0) NA 0 NA 1.041 1 NA NA NA NA NA LTS-033 chr6 32634409 32972903 338495 * character(0) 0.439601857618536 30 0.101078215987058 0.971932548372804 706 0.255544549891179 4 2 2 -6.83695277647454 LTS-033 chr6 32972904 32973263 360 * character(0) 0.381 1 NA 1.18354527946979 5 0.0721491510691567 5 5 0 -5.76453362217659 LTS-033 chr6 32973264 32974401 1138 * character(0) 0.258657977150419 9 0.227006057187909 1.44490329271376 31 1.18001950503289 18 14 4 -6.73350643597734 LTS-033 chr6 32974402 32974551 150 * character(0) 0.46 1 NA 1.40376399216299 3 1.7310148275891 6 6 0 -5.76441013474487 LTS-033 chr6 32974552 33037560 63009 * character(0) 0.45941087217892 11 0.0572535032671682 1.01289166624329 73 0.243410348574169 4 2 2 -7.19764455777691 LTS-033 chr6 33037561 33037611 51 * character(0) 0.391 1 NA 1.217 1 NA NA NA NA NA LTS-033 chr6 33037612 33054378 16767 * character(0) 0.269273060064985 9 0.215820784705994 0.962521465212865 65 0.349057519720938 3 3 0 -6.73766494149218 LTS-033 chr6 33054379 33054433 55 * character(0) 0.453 1 NA 1.028 1 NA NA NA NA NA LTS-033 chr6 33054434 37599840 4545407 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, NA NA NA NA NA NA NA NA NA LTS-033 UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.436020526395449 148 0.112343294262567 1.01328569934598 6825 0.390547420456342 4 2 2 -6.87477193844751 LTS-033 NA NA NA NA LTS-033 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.389 1 NA NA NA NA NA LTS-033 chr6 37599845 41709021 4109177 * c(LOC100131047, MIR4641, APOBEC2, BTBD9, FOXP4, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, MDGA1, GLO1, GLP1R, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, PGC, TREM2, TREM1, SAYSD1, LRFN2, ZFAND3, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.448732240658858 92 0.071019381216406 1.09267784139783 2946 0.311004870912523 4 2 2 -6.93113599814856 LTS-033 chr6 41709022 41709510 489 * PGC NA 0 NA 0.98 1 NA NA NA NA NA LTS-033 chr6 41709511 44081456 2371946 * c(LINC01512, TOMM6, DNPH1, CNPY3, FRS3, SLC22A7, KLHDC3, TAF8, PTCRA, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, CRIP3, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, PGC, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TRERF1, XPO5, PTK7, PRPH2, C6orf132, MRPL14, DLK2, SRF, TBCC, BYSL, VEGFA, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, NA NA NA NA NA NA NA NA NA LTS-033 POLR1C, MAD2L1BP, CUL7) 0.436041967829953 63 0.0929155285348383 1.0218002339879 4639 0.243961352041413 4 2 2 -6.89884668089261 LTS-033 NA NA NA NA LTS-033 chr6 44081457 44081512 56 * MRPL14 NA 0 NA 1.28 1 NA NA NA NA NA LTS-033 chr6 44081513 51927529 7846017 * c(ANKRD66, MIR4647, MIR4642, RCAN2, CRISP3, CAPN11, C6orf141, CRISP1, TCTE1, SLC29A1, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, ADGRF2, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, GLYATL3, MEP1A, TMEM151B, PTCHD4, MUT, NFKBIE, CYP39A1, PGK2, PKHD1, CLIC5, CENPQ, TMEM63B, AARS2, ENPP5, RHAG, MRPL14, MIR586, TFAP2B, CRISP2, PLA2G7, TFAP2D, SUPT3H, RUNX2, SLC25A27, NA NA NA NA NA NA NA NA NA LTS-033 CDC5L) 0.442228450647217 87 0.1032543528088 1.11087033265943 4108 0.323418190127041 4 2 2 -6.81196934062864 LTS-033 NA NA NA NA LTS-033 chr6 51927530 51929666 2137 * PKHD1 NA 0 NA 0.633 1 NA NA NA NA NA LTS-033 chr6 51929667 53707088 1777422 * c(MIR5685, IL17F, EFHC1, GSTA5, ICK, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, LRRC1, ELOVL5, RPS16P5, LOC730101, GSTA7P, GCM1, PAQR8, TRAM2) 0.421687621056002 27 0.147099429520451 1.01842281284019 1439 0.265116287905892 4 2 2 -6.81508904148604 LTS-033 chr6 53707089 53743768 36680 * LRRC1 NA 0 NA 1.325 1 NA NA NA NA NA LTS-033 chr6 53743769 57372361 3628593 * c(MLIP-IT1, BEND6, FAM83B, ZNF451, TINAG, HCRTR2, GFRAL, RAB23, HMGCLL1, LRRC1, PRIM2, KIAA1586, BMP5, DST, COL21A1, MLIP, BAG2) 0.456792641093685 55 0.0308957953182981 1.10363288844657 2426 0.248937386600265 4 2 2 -7.98094092037464 LTS-033 chr6 57372362 57393074 20713 * PRIM2 0.22 1 NA 1.09536101954238 4 0.620834049216589 4 4 0 -5.76441020449857 LTS-033 chr6 57393075 57512678 119604 * PRIM2 0.343566212647824 33 0.0800464472173576 1.41471449301106 75 0.727033390065594 7 5 2 -6.73496594243021 LTS-033 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.09795586933601 19 0.205019611100188 4 NA NA -5.76460629670814 LTS-033 chr6 62390154 62407067 16914 * KHDRBS2 0.454 1 NA 1.29302385613727 23 0.457286151666469 5 5 0 -5.76446570619359 LTS-033 chr6 62407068 72006512 9599445 * c(COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, LMBRD1, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1) 0.467247095191821 57 0.0276963258603991 1.12659006951518 2164 0.358256658409989 4 2 2 -8.75815325900988 LTS-033 chr6 72006513 72889472 882960 * c(RIMS1, MIR30A, MIR30C2, OGFRL1, LINC00472) 0.404 1 NA 1.16900389584631 77 0.365632416849953 4 4 0 -5.78190454132493 LTS-033 chr6 72889473 76782478 3893006 * c(KHDC1L, MIR4282, LOC100506804, KCNQ5-AS1, MB21D1, COL12A1, COX7A2, CD109, KHDC3L, EEF1A1, RIMS1, MTO1, SENP6, SLC17A5, FILIP1, DPPA5, IMPG1, NA, OOEP, MYO6, DDX43, TMEM30A, KCNQ5, KHDC1) 0.406916645573541 61 0.114992898331448 1.15427628388824 2514 0.31101170065098 4 2 2 -6.80228394372679 LTS-033 chr6 78171891 86318974 8147084 * c(HMGN3-AS1, SYNCRIP, MRAP2, RWDD2A, RIPPLY2, IRAK1BP1, PRSS35, LCA5, CEP162, DOPEY1, IBTK, HTR1B, ME1, NT5E, CYB5R4, PGM3, PHIP, FAM46A, SNX14, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.417614742766125 45 0.052952589810856 0.937112373840989 2905 0.227659080046761 3 2 1 -6.8511825566206 LTS-033 chr6 86318975 91269430 4950456 * c(MIR4464, SYNCRIP, SLC35A1, CGA, PNRC1, CNR1, PM20D2, SRSF12, CFAP206, C6orf163, ANKRD6, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, UBE2J1, AKIRIN2, RARS2, SMIM8, LYRM2, RRAGD, BACH2, LINC01590, MAP3K7, SNORD50B, SPACA1, GJA10, RNGTT, CASP8AP2) 0.390265998310242 38 0.104446917647073 0.892052371691679 3278 0.224000337467474 3 2 1 -6.8764745456388 LTS-033 chr6 91269431 105244647 13975217 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MAP3K7, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.363274518026159 41 0.120250881037288 0.955162576730534 2534 0.288174670337469 3 2 1 -6.80663014207256 LTS-033 chr6 105244648 105244745 98 * HACE1 NA 0 NA 0.725 1 NA NA NA NA NA LTS-033 chr6 105244746 121613428 16368683 * c(LIN28B-AS1, TRAPPC3L, LOC100287632, LOC100422737, LOC100996634, TRAF3IP2, BVES, SEC63, GTF3C6, NUS1, SLC16A10, COL10A1, BVES-AS1, AIM1, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, FOXO3, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, LACE1, FYN, FAM26E, MCM9, SCML4, ASF1A, AMD1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, DSE, HDAC2, RSPH4A, NA NA NA NA NA NA NA NA NA LTS-033 KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, PLN, SOBP, QRSL1, PREP, PDSS2, GOPC, HACE1, BEND3, REV3L, ROS1, FAM229B, PRDM1, POPDC3, TRAF3IP2-AS1, MICAL1, SMPD2, MIR548B, NR2E1, TSPYL1, TPI1P3, METTL24, FAM184A, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WISP3, WASF1, MFSD4B, ATG5, ZBTB24, FIG4) 0.362998349796395 48 0.134021903312018 0.893821042346418 8727 0.227997800769396 3 2 1 -7.16663790879819 LTS-033 NA NA NA NA LTS-033 chr6 121613429 121615696 2268 * TBC1D32 NA 0 NA 1.124 1 NA NA NA NA NA LTS-033 chr6 121615697 125413532 3797836 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, PKIB, SERINC1, RNF217-AS1) 0.3468242849184 14 0.148477326496393 0.991826043849065 1232 0.263405100579054 3 2 1 -6.89515509238731 LTS-033 chr6 125413533 139144140 13730608 * c(LOC100130476, LINC00271, NHEG1, MIR3145, MIR3662, SMLR1, LINC01013, GVQW2, MIR5695, HBS1L, MTFR2, TMEM200A, IL22RA2, SLC18B1, TAAR1, NCOA7, HINT3, CTGF, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, EPB41L2, EYA4, HEY2, HEBP2, TMEM244, CCDC28A, MOXD1, PDE7B, LINC00326, TAAR6, SLC35D3, IFNGR1, ECT2L, C6orf58, ARG1, HMGA1P7, CENPW, SOGA3, THEMIS, LAMA2, MAP3K5, FLJ46906, MYB, HDDC2, ENPP1, ENPP3, PEX7, NA NA NA NA NA NA NA NA NA LTS-033 IL20RA, AHI1, VNN3, ECHDC1, ARFGEF3, NHSL1, PTPRK, PBOV1, SNORA33, TRMT11, RPS12, PERP, LOC643623, CTAGE9, SGK1, ALDH8A1, TCF21, TNFAIP3, TPD52L1, OR2A4, RNF146, TAAR8, STX7, L3MBTL3, RSPO3, VNN2, VNN1, TAAR5, MAP7, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, BCLAF1) 0.409510970463188 108 0.0915491439598343 0.897105689405844 6970 0.294703813111716 3 2 1 -6.92903958598433 LTS-033 NA NA NA NA LTS-033 chr6 139144141 139145101 961 * ECT2L NA 0 NA 0.241486620048367 40 0.241177022973285 0 NA NA -5.76876322048457 LTS-033 chr6 139145102 150341299 11196198 * c(UST-AS1, LOC100132735, MIR3668, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, RAB32, KATNA1, GINM1, ADAT2, STXBP5, RAET1E, LOC153910, ZC2HC1B, RAET1L, TXLNB, TAB2, SASH1, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, ZC3H12D, ECT2L, NUP43, RAET1G, SUMO4, SAMD5, NMBR, PCMT1, AIG1, VTA1, HECA, PLAGL1, HYMAI, ADGRG6, ABRACL, LINC01625, RPS18P9, RAET1K, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, NA NA NA NA NA NA NA NA NA LTS-033 ULBP2, ULBP1, SF3B5, FBXO30, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, PHACTR2) 0.387601503892457 86 0.115901090550079 0.902505633234849 4742 0.22998411530806 3 2 1 -6.9131835092528 LTS-033 NA NA NA NA LTS-033 chr6 150341300 150726263 384964 * c(RAET1L, IYD, ULBP3, PPP1R14C) 0.399765764909345 26 0.0450069396358452 1.07256675971715 308 0.309783679005605 4 2 2 -6.75046676735663 LTS-033 chr6 150726264 150726302 39 * character(0) 0.403 1 NA 0.847 1 NA NA NA NA NA LTS-033 chr6 150726303 167590541 16864239 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, NA NA NA NA NA NA NA NA NA LTS-033 SNX9, MPC1, PLG, MTRF1L, RMND1, AGPAT4, TULP4, PLEKHG1, ARID1B, TMEM181, ZBTB2, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, VIP, ARMT1, ZDHHC14, AGPAT4-IT1, CCDC170, MYCT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP, AKAP12) 0.39816609546421 190 0.0864437136082741 0.916300724810353 8736 0.913645443740499 3 2 1 -6.74083557658278 LTS-033 NA NA NA NA LTS-033 chr6 167590542 167590605 64 * TCP10L2 NA 0 NA 0.636 1 NA NA NA NA NA LTS-033 chr6 167590606 167594303 3698 * TCP10L2 0.400228023558623 3 0.0728583099813147 0.526472833921113 67 0.381374127645609 0 0 0 -6.73920603670468 LTS-033 chr6 167594304 170067349 2473046 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, TCP10L2, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1, TTLL2) 0.381747864305526 41 0.123243438453945 0.97197301342454 1433 0.321907901774152 3 2 1 -6.75745793627835 LTS-033 chr6 170067350 170068131 782 * WDR27 NA 0 NA 0.838 1 NA NA NA NA NA LTS-033 chr6 170068132 170890384 822253 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.4209765023658 13 0.0473609976939264 0.877375200268556 633 0.588756501195122 2 1 1 -6.80216241323542 LTS-033 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.843295826063249 45 0.189335075216059 2 NA NA -5.76472429837031 LTS-033 chr7 193047 227931 34885 * FAM20C 0.411 1 NA 0.857186391800287 37 0.186621334585632 3 3 0 -5.76922681370319 LTS-033 chr7 227932 5925699 5697768 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-033 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.38483670556338 125 0.127254757436893 0.909542637052752 5294 0.246566561708768 3 2 1 -6.78716483929678 LTS-033 NA NA NA NA LTS-033 chr7 5925700 5925706 7 * OCM NA 0 NA 0.517 1 NA NA NA NA NA LTS-033 chr7 5925707 5952632 26926 * c(CCZ1, OCM) 0.347 1 NA 0.579435902077845 54 0.153475729159207 1 1 0 -5.76833745223472 LTS-033 chr7 5952633 5958446 5814 * CCZ1 NA 0 NA 0.912 1 NA NA NA NA NA LTS-033 chr7 5958447 5968019 9573 * c(RSPH10B, CCZ1) 0.449 1 NA 1.53410027457868 40 1.07110287159472 7 7 0 -5.76441181900706 LTS-033 chr7 5968020 5978467 10448 * RSPH10B NA 0 NA 0.092 1 NA NA NA NA NA LTS-033 chr7 5978468 6820560 842093 * c(ANKRD61, KDELR2, DAGLB, RSPH10B, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.407465379012191 29 0.0920646725996823 0.858007596537055 1361 0.222007709340104 2 1 1 -6.82174501691995 LTS-033 chr7 6820561 6820926 366 * RSPH10B2 NA 0 NA 0.365 1 NA NA NA NA NA LTS-033 chr7 6820927 6844723 23797 * c(CCZ1B, RSPH10B2) NA 0 NA 0.156570030074132 39 0.401406995764041 0 NA NA -5.86911200135233 LTS-033 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.382 1 NA NA NA NA NA LTS-033 chr7 6845571 6865911 20341 * CCZ1B 0.421363828115501 3 0.0985714630779788 1.35023905239672 41 0.560447209280449 6 3 3 -6.7453812416699 LTS-033 chr7 6865912 30880542 24014631 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, NA NA NA NA NA NA NA NA NA LTS-033 DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.40459036727621 199 0.0884693273808151 0.920637497215777 9868 0.333580168603155 3 2 1 -6.78415988776259 LTS-033 NA NA NA NA LTS-033 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.018 1 NA NA NA NA NA LTS-033 chr7 30882039 31825895 943857 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.325238721564864 18 0.163635974119824 1.04786274664551 782 0.448732331768651 4 3 1 -6.75452474005113 LTS-033 chr7 31825896 57233554 25407659 * c(DDC-AS1, DPY19L1P1, LOC100130673, LOC100130849, C7orf72, MIR1200, MIR3943, MIR550B2, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, AOAH-IT1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, FKBP9, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, BMPER, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, AVL9, NACAD, COBL, DPY19L1, KIAA0895, NUDCD3, SEC61G, LSM5, LINC00957, SUN3, SUMF2, KBTBD2, NA NA NA NA NA NA NA NA NA LTS-033 GBAS, GCK, VPS41, BBS9, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, AOAH, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, GPR141, FKBP9P1, INHBA, VWC2, NPSR1, NUPR2, LINC00997, LOC401324, RASA4CP, C7orf65, LINC01446, NPSR1-AS1, ZNRF2P1, RP9P, TARP, OGDH, CHCHD2, NT5C3A, NME8, PDE1C, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, ANLN, DDX56, EPDR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PPIA, DPY19L2P1, URGCP, COA1, LANCL2, PSMA2, YAE1D1, TBX20, PSPH, PURB, MYL7, RALA, RP9, FIGNL1, MYO1G, SEPT7P2, GUSBP10, HERPUD2, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, MIR550A2, UPP1, C7orf25, SUGCT, C7orf69, EEPD1, VOPP1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV, ELMO1, SEPT7) 0.388447004752287 276 0.105650107886564 0.926456271788882 11581 0.418787732505867 3 2 1 -6.74679969987741 LTS-033 NA NA NA NA LTS-033 chr7 57233555 57533225 299671 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 0.992776231237878 97 0.27060940319571 3 NA NA -5.77245764511489 LTS-033 chr7 62758725 63023528 264804 * ZNF733P 0.279 1 NA 1.22550546427598 7 0.675040986409961 5 5 0 -5.76454668819263 LTS-033 chr7 63023529 64530129 1506601 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.408316230466065 23 0.0315589667043558 0.937422440421021 604 0.270446949003086 3 2 1 -6.85593980666247 LTS-033 chr7 64530130 64535417 5288 * CCT6P3 0.389 1 NA 0.3 1 NA NA NA NA NA LTS-033 chr7 64535418 65084068 548651 * ZNF92 0.417 1 NA 0.575722759946354 93 0.106353495093737 1 1 0 -5.95454563155672 LTS-033 chr7 65084069 65150660 66592 * c(LOC441242, INTS4P2) NA 0 NA 0.996 1 NA NA NA NA NA LTS-033 chr7 65150661 73969418 8818758 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, MIR590, NA NA NA NA NA NA NA NA NA LTS-033 GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.394853661371694 88 0.0886270753780872 0.928162762106139 3509 0.269321371293278 3 2 1 -6.74040145882932 LTS-033 NA NA NA NA LTS-033 chr7 73969419 74133386 163968 * c(GTF2I, GTF2IRD1) NA 0 NA 0.950599875803968 96 0.223356216751188 3 NA NA -5.76478983630242 LTS-033 chr7 74133387 74210663 77277 * c(GTF2I, NCF1, GTF2IRD2) 0 1 NA 0.821500664876745 21 0.292906380297609 2 2 0 -5.76577376401237 LTS-033 chr7 74210664 77695037 3484374 * c(POM121C, PMS2P9, LOC100133091, APTR, MIR4651, CCL26, FGL2, DTX2, SSC4D, NSUN5P1, SRRM3, RSBN1L, POMZP3, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, MDH2, DTX2P1-UPK3BP1-PMS2P11, STAG3L2, SPDYE5, STYXL1, PMS2P5, PMS2P3, GSAP, STAG3L1, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, NCF1C, SNORA14A, GATSL2, YWHAG, ZP3, UPK3B, RCC1L, TMEM120A, GTF2IRD2, TMEM60, MAGI2) 0.295121709286319 44 0.0701018739212635 0.753058398411196 2254 0.209336156245216 2 2 0 -6.79917947178483 LTS-033 chr7 77695038 77708193 13156 * MAGI2 NA 0 NA 0.877 1 NA NA NA NA NA LTS-033 chr7 77708194 86506499 8798306 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.268242819913161 18 0.0859192507361349 0.844082836748586 2012 0.218832453659484 2 2 0 -7.40790503642891 LTS-033 chr7 86506500 91631211 5124712 * c(LOC101409256, AKAP9, DBF4, TP53TG1, RUNDC3B, C7orf62, ZNF804B, KIAA1324L, STEAP2, STEAP1, DPY19L2P4, CDK14, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, TMEM243, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12, DMTF1) 0.297421335500864 31 0.114008007641795 0.7910157338931 2775 0.223404407937769 2 2 0 -6.74273103150045 LTS-033 chr7 91631212 93539172 1907961 * c(MIR4652, AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, TFPI2, CALCR, RBM48, NA, KRIT1) 0.246870433388867 18 0.127862978130773 0.738004160998746 2057 0.185030095907497 2 2 0 -6.9396981307499 LTS-033 chr7 93539173 98569545 5030373 * c(MIR3609, LOC100506136, SLC25A13, BET1, COL1A2, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, PEG10, BRI3, TECPR1, GNG11, GNGT1, DLX6-AS1, MGC72080, C7orf76, ASNS, NPTX2, OCM2, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, BAIAP2L1, SDHAF3, CASD1, TAC1, MIR591, SHFM1, TRRAP, SGCE) 0.279981954931437 64 0.0751729157469947 0.806539794650388 2913 0.235696036485502 2 2 0 -6.82804763016715 LTS-033 chr7 98569546 98573751 4206 * TRRAP NA 0 NA 0.748 1 NA NA NA NA NA LTS-033 chr7 98573752 100355781 1782030 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, ATP5J2-PTCD1, MIR4658, CYP3A7-CYP3A51P, ARPC1B, POP7, ARPC1A, STAG3, CPSF4, COPS6, PDAP1, CYP3A7, CYP3A4, CYP3A5, EPO, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, PTCD1, FBXO24, GNB2, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, NA NA NA NA NA NA NA NA NA LTS-033 SMURF1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, TAF6, TFR2, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, GAL3ST4, OR2AE1, TSC22D4, TRRAP, ZNF394, MYH16, BUD31, TRIM4, AP4M1, ATP5J2) 0.302694804423488 49 0.064275653974717 0.745757178612607 4427 0.177845068435138 2 2 0 -6.80667109442496 LTS-033 NA NA NA NA LTS-033 chr7 100355782 100547299 191518 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.442 1 NA 0.815783665437677 617 3.6094886076589 2 2 0 -5.76442663596989 LTS-033 chr7 100547300 100549499 2200 * character(0) NA 0 NA 0.814905037661219 4 0.114027408985735 2 NA NA -5.76459063733105 LTS-033 chr7 100549500 100549573 74 * character(0) 0.278 1 NA 2.06 1 NA NA NA NA NA LTS-033 chr7 100549574 100550787 1214 * character(0) 0.333946081410659 38 0.115649249600435 1.34576007898746 63 0.49255351296447 16 11 5 -6.73608702276007 LTS-033 chr7 100550788 100551253 466 * character(0) 0.295004095464695 13 0.0869006948719673 0.555235173396454 39 0.259494528374704 2 2 0 -6.73515318197357 LTS-033 chr7 100551254 100551282 29 * character(0) NA 0 NA 1.119 1 NA NA NA NA NA LTS-033 chr7 100551283 100553077 1795 * character(0) 0.353948824249322 58 0.0866721105600949 1.29576564554513 100 0.674175310953308 4 3 1 -6.73332180369427 LTS-033 chr7 100553078 100553081 4 * character(0) NA 0 NA 0.83 1 NA NA NA NA NA LTS-033 chr7 100553082 100677181 124100 * c(MUC12, MUC17) 0.357876715194026 32 0.092396056463466 0.865664005611875 265 0.412758658097188 4 3 1 -6.7590448318517 LTS-033 chr7 100677182 100677441 260 * MUC17 NA 0 NA 1.716 1 NA NA NA NA NA LTS-033 chr7 100677442 100679290 1849 * MUC17 0.283671647688122 13 0.0943213954573703 1.74553591662645 48 1.23044549372653 20 15 5 -6.73348784741908 LTS-033 chr7 100679291 100679406 116 * MUC17 NA 0 NA 0.605 1 NA NA NA NA NA LTS-033 chr7 100679407 100695058 15652 * MUC17 0.323338909703832 8 0.0220935510952857 0.852841092151634 154 0.226394424504903 8 6 2 -6.87138093669318 LTS-033 chr7 100695059 100701610 6552 * MUC17 0.31 1 NA 0.790614333118185 27 0.175619838387716 2 2 0 -5.76442822738767 LTS-033 chr7 100701611 143305429 42603819 * c(LOC100129148, RPL19P12, LOC100130705, EFCAB10, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, KMT2E-AS1, LINC01004, RASA4B, SMKR1, MOXD2P, LOC100289561, SPDYE2B, MIR4285, MTRNR2L6, MIR3666, TMEM178B, MIR4653, MIR4468, MIR4467, LOC100630923, MIR5090, RNA5SP244, C7orf55-LUC7L2, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, CHRM2, TSGA13, AP1S1, CLCN1, OR9A4, CPA1, CPA2, OR9A2, C7orf34, NA NA NA NA NA NA NA NA NA LTS-033 TMEM139, COL26A1, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, PRSS58, ASZ1, MUC17, ASB15, CUX1, BMT2, PRSS3P2, CLEC2L, FMC1, FEZF1-AS1, IQUB, C7orf77, C7orf66, TMEM213, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, EPHA1, EPHB6, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLEC5A, MKRN1, CLDN15, POLR2J2, UBN2, POT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TAS2R39, TAS2R40, TAS2R41, HYALP1, TES, SLC13A4, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, DENND2A, GPR22, WEE2-AS1, EPHA1-AS1, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TAS2R60, TSPAN33, AGBL3, OR6V1, MOGAT3, FAM71F2, STRA8, KLRG2, IFRD1, DPY19L2P2, LOC349160, IMPDH1, IRF5, GSTK1, KCND2, NAT16, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, KEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ARF5, FEZF1, FAM180A, LAMB1, LEP, LINC00998, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, AKR1B15, CTAGE15, EIF3IP1, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRCAM, NRF1, WEE2, ORC5, SERPINE1, ATP6V0A4, PNPLA8, PAX4, TAS2R3, TAS2R4, TAS2R16, FIS1, CPA4, WNT16, ZC3HC1, LUC7L2, MRPS33, LSM8, SLC26A4, PIK3CG, PIP, PODXL, GPR85, POLR2J, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TAS2R5, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, CHCHD3, PPP1R3A, RBM28, TMEM140, TRPV6, AGK, PRKAR2B, METTL2B, KMT2E, BCAP29, TRPV5, ANKRD7, PRSS1, RELN, ZC3HAV1, PSMC2, AKR1B10, KIAA1147, TAS2R38, MIR490, STRIP2, PTN, KIAA1549, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, C7orf73, CCDC136, PARP12, CREB3L2, IFT22, SLC13A1, SMO, SPAM1, BPGM, AKR1D1, BRAF, SRPK2, SSBP1, SYPL1, TBXAS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, NA, UBE2H, VGF, WNT2, LUZP6, ZYX, C7orf49, GCC1, PRKRIP1, ST7, CBLL1, CPED1, TTC26, CALD1, ORAI2, KDM7A, CALU, TRIM56, CAPZA2, CASP2, ARMC10, IMMP2L, CTTNBP2, SLC37A3, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, MGAM, WASL, PLOD3, OR6W1P, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, MYL10, MGAM2, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CEP41, FAM131B, DOCK4) 0.293145237452461 496 0.0820082218577173 0.777157288140702 25383 0.257617234286381 2 2 0 -6.74729261997504 LTS-033 NA NA NA NA LTS-033 chr7 143305430 143321183 15754 * TCAF2 NA 0 NA 0.22990569466723 43 0.229579313374633 0 NA NA -5.85406862807222 LTS-033 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.321 1 NA NA NA NA NA LTS-033 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.312762161987491 11 0.0515519155803157 0.842984125444537 282 0.34424182306964 2 2 0 -6.78504344513142 LTS-033 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.335 1 NA NA NA NA NA LTS-033 chr7 143883365 143981556 98192 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.459190424228237 86 0.382203748994635 0 NA NA -5.76458135225972 LTS-033 chr7 143981557 143982345 789 * ARHGEF34P NA 0 NA 0.586 1 NA NA NA NA NA LTS-033 chr7 143982346 144074420 92075 * c(ARHGEF34P, ARHGEF5) 0.437 1 NA 0.596426976784681 74 0.301341858952673 1 1 0 -5.765742025913 LTS-033 chr7 144074421 144075785 1365 * ARHGEF5 NA 0 NA 1.256 1 NA NA NA NA NA LTS-033 chr7 144075786 158334184 14258399 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, NA NA NA NA NA NA NA NA NA LTS-033 GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.278827435352339 206 0.0809040829438658 0.775375754980696 8831 0.244557370949896 2 2 0 -6.78026863899766 LTS-033 NA NA NA NA LTS-033 chr7 158334185 159025951 691767 * c(MIR5707, LINC00689, NCAPG2, WDR60, ESYT2, PTPRN2, VIPR2) NA 0 NA 0.736942507314791 695 0.152624520711293 2 NA NA -5.8245426504795 LTS-033 chr8 182757 182794 38 * ZNF596 0.237 1 NA 0.593 1 NA NA NA NA NA LTS-033 chr8 182795 7305471 7122677 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.303914429667476 75 0.053182439694808 0.805903395391878 2322 0.229867901794304 2 2 0 -6.81414211464601 LTS-033 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.366 1 NA NA NA NA NA LTS-033 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.314571790739607 2 0.0898025612106915 0.559574193719139 95 0.466938916133338 2 2 0 -6.88294344087124 LTS-033 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.815 1 NA NA NA NA NA LTS-033 chr8 8175295 22105568 13930274 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, LPL, MIR124-1, MIR320A, NA NA NA NA NA NA NA NA NA LTS-033 ASAH1, MSR1, MSRA, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, SFTPC, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MFHAS1, RP1L1, PHYHIP) 0.290045016717042 138 0.0645201051214183 0.790950685916475 7106 0.362866802870656 2 2 0 -6.75566985915907 LTS-033 NA NA NA NA LTS-033 chr8 22105569 27767339 5661771 * c(MIR4287, MIR3622A, MIR3622B, LOC100507156, SORBS3, PNMA2, ADAM28, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, DPYSL2, EGR3, R3HCC1, EPHX2, PTK2B, TRIM35, RHOBTB2, SLC39A14, LOC254896, ADAMDEC1, GNRH1, LOC286059, SCARA5, LOC389641, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, C8orf58, KCTD9, PIWIL2, PPP2R2A, CCDC25, PPP3CC, PBK, BIN3, CCAR2, PDLIM2, EBF2, POLR3D, BNIP3L, STC1, DOCK5, BIN3-IT1, NA NA NA NA NA NA NA NA NA LTS-033 STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.293872856006051 123 0.0789159973609758 0.759646671535226 5334 0.248822149144784 2 2 0 -6.77896979431628 LTS-033 NA NA NA NA LTS-033 chr8 27767340 27913584 146245 * c(SCARA5, NUGGC) NA 0 NA 0.790327150878628 99 0.264075992604648 2 NA NA -5.76457803695687 LTS-033 chr8 27913585 27967856 54272 * c(NUGGC, ELP3) 0.444 1 NA 0.959716249569156 73 0.188354522588666 3 3 0 -5.76491356343601 LTS-033 chr8 27967857 37456428 9488572 * c(RBPMS-AS1, MIR3148, MIR4288, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, UNC5D, FBXO16, KCNU1, DUSP4, EXTL3, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, PURG, NRG1, SARAF, PNOC, ELP3, PPP2CB, INTS9, ZNF395, TEX15, LINC00589, MBOAT4, WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.41260250635265 38 0.12689097705077 0.956854250980292 3486 0.256276596267237 3 2 1 -6.78203560483608 LTS-033 chr8 37456429 39142479 1686051 * c(ERLIN2, PROSC, GOT1L1, LETM2, ADRB3, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.392637475143303 27 0.0918347797984336 0.895742701832518 2640 0.206229443219579 3 2 1 -6.78211893559503 LTS-033 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.455 1 NA NA NA NA NA LTS-033 chr8 39311551 39349381 37831 * ADAM3A 0 2 0 1.77973170491426 55 0.584210010784082 0 0 0 -Inf LTS-033 chr8 39349382 39349389 8 * ADAM3A NA 0 NA 1.148 1 NA NA NA NA NA LTS-033 chr8 39349390 42709039 3359650 * c(LOC100130964, AP3M2, CHRNB3, SMIM19, GPAT4, NKX6-3, ADAM3A, IDO2, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, GINS4, ADAM18, CHRNA6) 0.392073884184547 30 0.134284142900354 0.937133500910255 2405 0.266684390169868 3 2 1 -6.73314319427224 LTS-033 chr8 42709040 43212050 503011 * c(MIR4469, HGSNAT, FNTA, POTEA, RNF170, POMK, HOOK3) NA 0 NA 0.937770762894009 529 0.251321454143887 3 NA NA -5.76441053310624 LTS-033 chr8 47752736 48102987 350252 * c(LOC100287846, LINC00293) 0.396 1 NA 0.95746883997238 47 0.187704244601069 3 3 0 -5.76705853969491 LTS-033 chr8 48102988 48975705 872718 * c(LOC100287846, CEBPD, SPIDR, MCM4, PRKDC, UBE2V2) 0.333217563936075 8 0.199675763963195 0.901284306672658 894 0.224426779805801 3 2 1 -6.80400425367126 LTS-033 chr8 48975706 53627084 4651379 * c(PCMTD1, PXDNL, FAM150A, C8orf22, SNTG1, SNAI2, EFCAB1, ST18, RB1CC1) 0.360122644758095 26 0.106606371580401 1.00475199247393 1015 0.297073488674707 3 2 1 -6.94067798613954 LTS-033 chr8 53627085 53850999 223915 * character(0) NA 0 NA 1.205 1 NA NA NA NA NA LTS-033 chr8 53851000 67972815 14121816 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, LYPLA1, COPS5, XKR4, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, NPBWR1, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, MRPL15, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, OPRK1, PDE7A, ATP6V1H, PENK, NA NA NA NA NA NA NA NA NA LTS-033 PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, TCEA1, TTPA, CA8, CHCHD7, VCPIP1, NSMAF, TRIM55, DNAJC5B, RGS20, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.424122138825601 88 0.08087608641117 1.19447589969132 5278 0.29656507981377 5 3 2 -6.96955756516958 LTS-033 NA NA NA NA LTS-033 chr8 67972816 67973598 783 * COPS5 NA 0 NA 1.694 1 NA NA NA NA NA LTS-033 chr8 67973599 71012856 3039258 * c(LINC01592, ARFGEF1, COPS5, C8orf34, SULF1, C8orf34-AS1, CPA6, PRDM14, CSPP1, PREX2, SLCO5A1) 0.423601610665313 20 0.0481604773538154 1.29769760197757 1474 0.299757252677073 5 3 2 -6.8780837745155 LTS-033 chr8 71012857 85097386 14084530 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, MIR5708, MIR5681A, MIR5681B, LOC101241902, NCOA2, STMN2, RALYL, RDH10, SBSPON, EYA1, FABP4, FABP5, HEY1, TRAM1, LY96, STAU2, LACTB2-AS1, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, XKR9, LOC392232, MIR2052HG, PI15, ZC2HC1A, LACTB2, PMP2, GDAP1, TMEM70, UBE2W, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TCEB1, TERF1, TPD52, ZFAND1, NA NA NA NA NA NA NA NA NA LTS-033 ZFHX4, CRISPLD1, TRPA1, MSC, CHMP4C, KCNB2) 0.401523748875566 65 0.111261779843063 1.21561940862626 4400 0.316954481805673 5 3 2 -6.79777751199323 LTS-033 NA NA NA NA LTS-033 chr8 85097387 95416397 10319011 * c(C8orf88, LRRC69, REXO1L2P, MIR378D2, MIR4661, LINC00534, CDH17, WWP1, SLC26A7, FAM92A1, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, ATP6V0D2, REXO1L1P, RAD54B, GEM, TRIQK, CA13, C8orf87, RBM12B, C8orf59, MMP16, FLJ46284, NBN, RMDN1, OTUD6B, PDP1, CNGB3, RBM12B-AS1, TMEM55A, NECAB1, LINC00535, OSGIN2, CA1, CA2, CA3, CALB1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, TMEM67) 0.424617573295233 83 0.0663727153987057 0.987340157736245 3855 0.259746604300291 3 2 1 -7.09561810332501 LTS-033 chr8 95416398 101661961 6245564 * c(MIR875, LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR4471, C8orf37-AS1, FSBP, RIDA, CPQ, POP1, OSR2, COX6C, NDUFAF6, ANKRD46, C8orf37, VPS13B, SNX31, ERICH5, RAD54B, RNF19A, KIAA1429, RGS22, SNORA72, DPY19L4, FBXO43, KCNS2, GDF6, MATN2, MTERF3, POLR2K, ESRP1, LAPTM4B, INTS8, RPL30, LINC01298, SDC2, SPAG1, STK3, MIR599, UQCRB, PLEKHF2, NIPAL2, TSPYL5, CCNE2, MTDH, TP53INP1, PTDSS1) 0.387731617723311 62 0.100754163065026 1.24137182163177 3793 0.297102253101571 5 3 2 -6.74732962510667 LTS-033 chr8 101661962 101733775 71814 * PABPC1 NA 0 NA 1.09347877735498 71 0.15682764636372 4 NA NA -5.76441024240525 LTS-033 chr8 101733776 102678798 945023 * c(PABPC1, FLJ42969, ZNF706, YWHAZ, GRHL2, NACAP1) 0.282 1 NA 1.49323291091231 181 0.299717637018312 7 7 0 -5.77735992628543 LTS-033 chr8 102678799 104080978 1402180 * c(MIR5680, ODF1, RRM2B, UBR5, AZIN1, ATP6V1C1, KLF10, GRHL2, NCALD) 0.275207977728648 19 0.0954265585158316 1.57444029963687 895 0.41640622327758 7 6 1 -6.77354433028805 LTS-033 chr8 104080979 104081077 99 * ATP6V1C1 NA 0 NA 1.77 1 NA NA NA NA NA LTS-033 chr8 104081078 106456666 2375589 * c(MIR3151, BAALC-AS1, CTHRC1, BAALC-AS2, DPYS, ZFPM2, DCAF13, LRP12, ATP6V1C1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.269644540575047 16 0.0832176864214172 1.83523780897387 1075 5.09876142832589 10 8 2 -6.73359749449204 LTS-033 chr8 106456667 106573547 116881 * ZFPM2 NA 0 NA 2.03 1 NA NA NA NA NA LTS-033 chr8 106573548 110255223 3681676 * c(ABRA, TMEM74, ZFPM2, ANGPT1, RSPO2, EIF3E, OXR1, TRHR, NUDCD1, EMC2) 0.290829791775349 21 0.0387433558051909 2.00098786500336 821 0.531265141898753 9 7 2 -6.76610720508589 LTS-033 chr8 110255224 110255298 75 * NUDCD1 NA 0 NA 1.746 1 NA NA NA NA NA LTS-033 chr8 110255299 116423715 6168417 * c(MIR2053, CSMD3, KCNV1, SYBU, ENY2, TRPS1, NUDCD1, EBAG9, PKHD1L1) 0.305246265846951 34 0.0921538665269371 1.75391752645791 1433 0.422424961425501 8 6 2 -6.75119510530151 LTS-033 chr8 116423716 125343042 8919327 * c(FAM83A-AS1, MIR3610, ZHX1-C8orf76, MIR4663, LINC00536, COLEC10, ZHX1, MAL2, FBXO32, TMEM65, FAM91A1, SLC30A8, EXT1, ZHX2, MTBP, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, SAMD12, FER1L6-AS1, AARD, NOV, TNFRSF11B, ENPP2, WDYHV1, SAMD12-AS1, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, FER1L6, SNTB1, TAF2, TRPS1, COL14A1, DSCC1, DERL1, UTP23, C8orf76, FAM83A, EIF3H, MED30, TBC1D31) 0.311219961075466 64 0.0704498020094777 1.61354065986658 3728 0.817588266284128 8 6 2 -6.76877656135328 LTS-033 chr8 125343043 126445544 1102502 * c(TRIB1, RNF139, ZNF572, TMEM65, LINC00964, NSMCE2, NDUFB9, TRMT12, SQLE, TATDN1, MTSS1, KIAA0196) 0.329647103766902 16 0.049395301733397 1.47045334334612 784 0.329048069399283 7 5 2 -6.82122648897321 LTS-033 chr8 126445545 127569718 1124174 * c(LINC00861, TRIB1, FAM84B) NA 0 NA 1.47923216365807 158 0.378248143027539 6 NA NA -5.77645496286616 LTS-033 chr8 127569719 128100409 530691 * c(PCAT1, FAM84B) 0.182 1 NA 2.17608520153115 15 0.394415275469662 11 11 0 -5.76446616098402 LTS-033 chr8 128100410 133811435 5711026 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR5194, HHLA1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, MYC, ASAP1, PHF20L1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977, OC90, HPYR1) 0.183150350683434 35 0.0701118314378039 2.4423748477472 1387 0.891967817561734 12 11 1 -6.77103674401064 LTS-033 chr8 133811436 133820038 8603 * PHF20L1 NA 0 NA 2.35871029709035 21 0.6198436822911 12 NA NA -5.76441067850177 LTS-033 chr8 133820039 133823269 3231 * PHF20L1 NA 0 NA 0.563 1 NA NA NA NA NA LTS-033 chr8 133823270 133824377 1108 * PHF20L1 0.383 1 NA 0.608874539438175 23 0.0923712007888707 1 1 0 -5.76446332263652 LTS-033 chr8 133824378 136470912 2646535 * c(NDRG1, KHDRBS3, LINC01591, MIR30B, MIR30D, PHF20L1, ZFAT, ZFAT-AS1, ST3GAL1, SLA, TG, WISP1) 0.315216139732876 39 0.0402501959324994 0.74190896951246 1177 0.164563920331561 2 2 0 -6.97518151343348 LTS-033 chr8 136470913 136471011 99 * KHDRBS3 NA 0 NA 0.838 1 NA NA NA NA NA LTS-033 chr8 136471012 140945805 4474794 * c(KHDRBS3, COL22A1, FAM135B, KCNK9, TRAPPC9) 0.233425641925151 15 0.128115163966235 0.85461273736359 742 0.401060797583059 3 3 0 -6.88328683581729 LTS-033 chr8 140945806 146171437 5225632 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, NA NA NA NA NA NA NA NA NA LTS-033 MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.303621094401434 265 0.0814028577077979 0.753153925414465 8052 0.20695356118174 2 2 0 -6.83115862719715 LTS-033 NA NA NA NA LTS-033 chr8 146171438 146280905 109468 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 0.729981079601448 253 0.133079704187864 2 NA NA -5.78144806968958 LTS-033 chr9 14732 14788 57 * WASH1 0.35 1 NA 0.759 1 NA NA NA NA NA LTS-033 chr9 14789 5786850 5772062 * c(WASH1, RCL1, DMRT2, INSL6, C9orf66, KCNV2, GLIS3, DMRT1, FOXD4, KANK1, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, PUM3) 0.444327356582804 23 0.0319058645036194 1.04274823745946 2789 0.308872326621946 4 2 2 -7.53217516907787 LTS-033 chr9 5786851 5909587 122737 * c(MLANA, ERMP1) 0 1 NA 0.954436369190029 115 0.200808792933983 3 3 0 -5.76499549885444 LTS-033 chr9 5909588 8449866 2540279 * c(MIR4665, UHRF2, KIAA2026, KDM4C, MLANA, RANBP6, GLDC, PTPRD, TPD52L3, IL33, TMEM261) 0.351690772004061 12 0.210122961836419 1.03510961484878 1109 0.363249008571049 4 3 1 -6.76790630770458 LTS-033 chr9 8449867 8451735 1869 * PTPRD NA 0 NA 1.509 1 NA NA NA NA NA LTS-033 chr9 8451736 14084194 5632459 * c(LINC00583, LURAP1L, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.274842573751672 6 0.245767166236664 1.17311289559513 614 0.463449141662107 5 4 1 -6.8091389043035 LTS-033 chr9 14084195 14085583 1389 * NFIB 0.429 1 NA 1.35973205578601 31 0.334711790643382 6 6 0 -5.76441854632266 LTS-033 chr9 14085584 14617624 532041 * c(ZDHHC21, NFIB) 0.433929371162227 3 0.0485832618638697 1.14916810037218 203 0.320220688697395 4 2 2 -6.91640151582384 LTS-033 chr9 14617625 24545513 9927889 * c(CDKN2B-AS1, C9orf92, IZUMO3, MIR3152, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, ELAVL2, CCDC171, SLC24A2, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MIR31, MLLT3, LINC01239, MTAP, CDKN2A-AS1, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, MIR491, NA NA NA NA NA NA NA NA NA LTS-033 RPS6, DMRTA1, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.435753704235423 67 0.114900798855216 1.03551525793342 3873 0.275976777820528 4 2 2 -6.99518196352809 LTS-033 NA NA NA NA LTS-033 chr9 24545514 24545972 459 * IZUMO3 0 1 NA 1.70608384083433 7 0.335692815929484 8 8 0 -5.76441026806732 LTS-033 chr9 24545973 26995108 2449136 * c(LOC100506422, TUSC1, LRRC19, CAAP1, IFT74, PLAA) 0.348668631826755 14 0.210811839961924 1.04468735613931 336 0.425587706863251 4 3 1 -6.75024534429404 LTS-033 chr9 26995109 26995787 679 * c(LRRC19, IFT74) 0.49 1 NA 1.17964805675904 13 0.252662869533744 5 5 0 -5.76443151746432 LTS-033 chr9 26995788 36864119 9868332 * c(SNORD121A, MIR876, MIR873, TOPORS-AS1, GNE, MIR4667, MIR4475, SNORD121B, TOPORS, SIGMAR1, CREB3, UNC13B, CCL27, PTENP1, DCTN3, CLTA, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, LINC00961, ATP8B5P, C9orf72, FAM219A, CCDC107, FANCG, PHF24, DDX58, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, B4GALT1, DNAI1, SIT1, SPINK4, ANXA2P2, STOML2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, NA NA NA NA NA NA NA NA NA LTS-033 ENHO, FAM205BP, FAM221B, OR13J1, LINC01242, TMEM215, CNTFR-AS1, SUGT1P1, ANKRD18B, NDUFB6, NFX1, ACO1, NPR2, PAX5, UBAP1, CHMP5, TMEM8B, EQTN, APTX, UBE2R2, SMU1, UBAP2, PRSS3, OR2S2, IFNK, BAG1, KIAA1161, GBA2, RMRP, CCL19, CCL21, HRCT1, LRRC19, NOL6, MSMP, TEK, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, MOB3B, IFT74, FAM214B, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, LINC00950, CD72, RGP1, MELK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RUSC2) 0.430595346617393 137 0.0810472439601884 1.04701534171313 7693 0.263621082134809 4 2 2 -6.9406544846606 LTS-033 NA NA NA NA LTS-033 chr9 36864120 36864283 164 * c(MIR4540, PAX5) 0 1 NA 2.22115405463298 3 2.45887582714812 11 11 0 -5.76441013842202 LTS-033 chr9 36864284 37436925 572642 * c(EBLN3P, MIR4540, MIR4476, PAX5, ZCCHC7, GRHPR) 0.314178617957675 9 0.189810065884587 1.02788889687097 237 0.418420834286283 4 3 1 -6.76466161454654 LTS-033 chr9 37436926 37438526 1601 * c(GRHPR, ZBTB5) 0.48 1 NA 0.941328301725786 11 0.148194344144315 3 3 0 -5.76441086060236 LTS-033 chr9 37438527 39178214 1739688 * c(FAM95C, FAM201A, TRMT10B, ALDH1B1, FRMPD1, ANKRD18A, FBXO10, IGFBPL1, TOMM5, EXOSC3, POLR1E, SHB, DCAF10, CNTNAP3, SLC25A51, ZBTB5) 0.420964454749899 26 0.0581936819198151 1.06057368554112 1076 0.357881202519975 4 2 2 -6.77392424064557 LTS-033 chr9 40498471 43861081 3362611 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) 0.421 1 NA 0.606820355437931 86 0.357423076204596 1 1 0 -5.77814003780533 LTS-033 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.977356097858462 8 0.365967211646071 3 NA NA -5.76685228420809 LTS-033 chr9 65602571 66457127 854557 * LOC286297 0.429 1 NA 1.0600630520774 3 0.165311826558175 4 4 0 -5.78271625703955 LTS-033 chr9 66457128 117074810 50617683 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, LOC100132781, FAM27B, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, NA NA NA NA NA NA NA NA NA LTS-033 SPIN1, SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF883, ZNF169, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ECM2, ABCA1, LPAR1, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, LOC286297, FAM225A, LOC286359, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 OR13C9, OR13D1, NA, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, AQP7P1, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PTGER4P2-CDK2AP2P2, FOXB2, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PGM5-AS1, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, PGM5P2, RGS3, NAA35, RORB, MIR455, SLC28A3, FRG1JP, CBWD6, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, ANKRD20A4, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CEP78, HSDL2, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.395756423114423 572 0.0957000989724325 0.89622468497036 26291 0.755578801281218 3 2 1 -6.83921414174533 LTS-033 NA NA NA NA LTS-033 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.246 1 NA NA NA NA NA LTS-033 chr9 117085363 117089956 4594 * ORM1 0.202 1 NA 0.316277095796467 42 0.900263489949279 0 0 0 -5.7649364564127 LTS-033 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.861 1 NA NA NA NA NA LTS-033 chr9 117092173 123171654 6079482 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.389959625344494 38 0.122769638218408 0.948256945858952 1717 0.246351259479164 3 2 1 -6.74145604677617 LTS-033 chr9 123171655 123173535 1881 * CDK5RAP2 NA 0 NA 0.671 1 NA NA NA NA NA LTS-033 chr9 123173536 139996641 16823106 * c(LOC100128593, LOC100129034, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, LOC100288842, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR4478, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, NA NA NA NA NA NA NA NA NA LTS-033 POMT1, ZBTB6, NEK6, SDCCAG3, USP20, SLC27A4, CNTRL, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DBH-AS1, ASB6, DAB2IP, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, OR1Q1, TTLL11, TTC16, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, MEGF9, ABCA2, ENDOG, ENG, AK1, NAIF1, STOM, FCN1, FCN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 DOLK, FNBP1, SETX, ZBTB43, PMPCA, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, GPSM1, DKFZP434A062, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, LINC00094, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, LCN12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 C9orf142, FAM78A, RAPGEF1, NTMT1, PHPT1, GSN, PKN3, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, QRFP, OR1J1, OR1B1, GLT6D1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, TMEM8C, OR1L6, OR5C1, OR1K1, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, SOHLH1, ZBTB34, MIR126, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, ASS1, NDUFA8, NOTCH1, ODF2, PAEP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PDCL, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, RAB14, C9orf78, FBXW5, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, RABL6, CDK5RAP2, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, DOLPP1, PTGDS, PTGS1, KCNT1, ZBTB26, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, DDX31, FAM129B, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SURF6, SNORD90, MIR601, TRAF1, TRAF2, TSC1, C5, TTF1, DNLZ, C8G, VAV2, ZNF79, C9orf16, MAPKAP1, PTGES2, BRD3, NUP214, LHX3, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, MRRF, RBM18, GTF3C5, GTF3C4, LHX2, MED27, PTGES, ENTPD2, RALGPS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ADAMTSL2, PPP1R26, SEC16A) 0.406688775695186 489 0.086772625104918 0.871880211924794 23820 0.539492714693035 3 2 1 -6.92333799046787 LTS-033 NA NA NA NA LTS-033 chr9 139996642 139996698 57 * MAN1B1 0.202 1 NA 1.21033461886489 3 0.775337990814329 5 5 0 -5.76441019277169 LTS-033 chr9 139996699 140139805 143107 * c(MIR3621, TUBB4B, MAN1B1, SLC34A3, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, CYSRT1, LRRC26, FAM166A, RNF224, RNF208, SSNA1, TMEM203) 0.227326106318047 9 0.139931927895118 0.848548492588476 793 0.25633915364228 3 3 0 -6.7622773480758 LTS-033 chr9 140139806 140195732 55927 * c(STPG3-AS1, NELFB, FAM166A, STPG3, NRARP, TOR4A) 0.444 1 NA 0.846517724912841 237 0.175995372363794 2 2 0 -5.77137633669675 LTS-033 chr9 140195733 141069927 874195 * c(NOXA1, ZMYND19, NSMF, PNPLA7, ENTPD8, NRARP, EXD3, EHMT1-IT1, TUBBP5, MRPL41, MIR602, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.398058905567193 13 0.0569987629195492 0.884346941318186 1281 0.21159236646441 3 2 1 -6.77589381826328 LTS-033 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.827299151967065 8 0.486327178964943 2 NA NA -5.76442537003424 LTS-033 chr10 94832 95353 522 * TUBB8 0.495 1 NA 0.900177897471977 8 0.253386174783528 3 3 0 -5.76441816982788 LTS-033 chr10 95354 17953152 17857799 * c(ST8SIA6-AS1, PPIAP30, LINC00704, MIR1265, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, RPP38, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, WDR37, SEPHS1, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, ST8SIA6, AKR1C8P, IDI1, IL2RA, IL15RA, NA NA NA NA NA NA NA NA NA LTS-033 ITIH2, AKR1C6P, C1QL3, LINC00200, LINC00701, LOC399715, GATA3-AS1, ACBD7, PRR26, MRC1, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, CALML5, PFKFB3, PFKP, PHYH, ANKRD16, FAM208B, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, IDI2-AS1, PRKCQ, CAMK1D, NA, SFMBT2, RSU1, ADARB2-AS1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, ECHDC3, ASB13, TUBAL3, FAM188A, STAM, CUBN, ITIH5, CALML3, AKR1E2, FAM107B, CCDC3, TAF3, FBXO18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RBM17, ITGA8, PRPF18, AKR1C3, CDC123, IDI2, HACD1, PTER, NMT2, USP6NL) 0.426186798451382 209 0.0761535811041067 0.928952796789858 8856 0.268428505350846 3 2 1 -6.85153142726876 LTS-033 NA NA NA NA LTS-033 chr10 17953153 18060259 107107 * c(MRC1, NA, TMEM236) NA 0 NA 0.075 1 NA NA NA NA NA LTS-033 chr10 18060260 18155626 95367 * c(MRC1, NA, TMEM236) NA 0 NA 0.14175402378285 97 0.21444177661645 0 NA NA -7.16176920659349 LTS-033 chr10 18155627 18169510 13884 * MRC1 NA 0 NA 0.601 1 NA NA NA NA NA LTS-033 chr10 18169511 38672144 20502634 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, LOC100129055, SLC39A12-AS1, LOC100130992, MTRNR2L7, MIR1915, ZNF33BP1, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ENKUR, ARMC3, ZNF25, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, SEPT7P9, EBLN1, NA NA NA NA NA NA NA NA NA LTS-033 ITGB1, PTCHD3, KIF5B, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, ZNF248, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CACNB2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, PLXDC2, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12, SPAG6) 0.413187849691231 184 0.101759224505287 0.950616683772604 8344 0.407124708728696 3 2 1 -6.76883556098174 LTS-033 NA NA NA NA LTS-033 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.876284012529882 5 0.141754365012158 3 NA NA -5.77368671526572 LTS-033 chr10 42379869 42941738 561870 * LOC441666 0.162729684709993 8 0.144218026909656 0.834218594891933 42 0.59361773824892 4 4 0 -6.87976387749929 LTS-033 chr10 42941739 42947047 5309 * character(0) NA 0 NA 0.807 1 NA NA NA NA NA LTS-033 chr10 42947048 42965636 18589 * character(0) 0.488 1 NA 0.974534657788677 13 0.562099908995107 3 3 0 -5.76446311890644 LTS-033 chr10 42965637 43078259 112623 * c(ZNF37BP, ZNF33B, LINC00839) 0.396 1 NA 0.884951325473104 11 0.607200371301839 3 3 0 -5.76501992246444 LTS-033 chr10 43078260 47903235 4824976 * c(C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, FXYD4, NPY4R, CSGALNACT2, NA, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, ZFAND4, GPRIN2, NA NA NA NA NA NA NA NA NA LTS-033 BMS1) 0.445021181460996 77 0.0615416324305313 0.922279941346707 2046 0.265815563005823 3 2 1 -7.1320296553194 LTS-033 NA NA NA NA LTS-033 chr10 47903236 47915827 12592 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.374 1 NA NA NA NA NA LTS-033 chr10 47915828 48055065 139238 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.307772897138879 49 0.250651102810532 0 NA NA -5.9909910394498 LTS-033 chr10 48055066 48370391 315326 * c(ZNF488, CTSLP2, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.983 1 NA NA NA NA NA LTS-033 chr10 48370392 51050191 2679800 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.431653312297172 44 0.121205683254858 0.947350941160953 2202 0.283526601516422 3 2 1 -6.79291462711049 LTS-033 chr10 51050192 51391503 341312 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.390341443000391 39 0.473566023567425 0 NA NA -5.79485148124573 LTS-033 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 0.958 1 NA NA NA NA NA LTS-033 chr10 51537127 63169170 11632044 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.446535148138553 51 0.0969139501077641 0.957908768333111 3094 0.275395629382887 3 2 1 -6.94746215087762 LTS-033 chr10 63169171 74671611 11502441 * c(MIR1296, MIR1256, MIR4676, MIR548AV, MICU1, ANAPC16, COL13A1, ADAMTS14, OIT3, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, UNC5B, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, PALD1, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, C10orf105, NODAL, NEUROG3, PCBD1, ASCC1, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, NA NA NA NA NA NA NA NA NA LTS-033 PSAP, SAR1A, CDH23, PBLD, NPFFR1, C10orf54, SUPV3L1, TACR2, SNORD98, UNC5B-AS1, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, AIFM2, ADO, JMJD1C-AS1, SGPL1, MCU, DDX21, CHST3, VPS26A, SPOCK2) 0.437843068278789 154 0.0778630789892647 0.887084430756467 7208 0.232682693074667 3 2 1 -7.28461716666314 LTS-033 NA NA NA NA LTS-033 chr10 74671612 74767335 95724 * c(OIT3, P4HA1, PLA2G12B) 0.433 1 NA 0.899290425354362 85 0.131948834621543 3 3 0 -5.77011642454447 LTS-033 chr10 74767336 74767695 360 * P4HA1 0.225240018874639 9 0.114863082745405 1.11207282357109 14 0.157334406232761 8 7 1 -6.73497689404851 LTS-033 chr10 74767696 74834651 66956 * P4HA1 0.488 1 NA 0.821265956564979 69 0.143009483168826 2 2 0 -5.76930738516742 LTS-033 chr10 74834652 75575062 740411 * c(ECD, CHCHD1, MSS51, CFAP70, USP54, FUT11, ZSWIM8, DNAJC9, NUDT13, GLUD1P3, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1, AGAP5, BMS1P4, SYNPO2L, CAMK2G, NDST2, SEC24C) 0.42104365780259 64 0.0867286408452084 0.871587114969003 1740 0.237754229944197 3 2 1 -6.8327752036824 LTS-033 chr10 75575063 75576564 1502 * CAMK2G NA 0 NA 0.654 1 NA NA NA NA NA LTS-033 chr10 75576565 76789799 1213235 * c(ADK, KAT6B, AP3M1, C10orf55, PLAU, VCL, CAMK2G) 0.458969638230018 9 0.025556038642777 0.800262072198357 673 0.158961976412002 2 1 1 -8.54506333953204 LTS-033 chr10 76789800 89463460 12673661 * c(DLG5-AS1, ZNF503-AS2, LINC00856, BMS1P21, GRID1-AS1, MIR4678, PPIF, NRG3, ADIRF, POLR3A, LDB3, COMTD1, AGAP11, SAMD8, DYDC1, EIF5AL1, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, WAPL, KAT6B, ZNF503-AS1, LRIT1, GHITM, GLUD1, ZMIZ1-AS1, GRID1, ANXA11, DUPD1, LRIT2, KCNMA1, SH2D4B, C10orf99, LINC00595, MAT1A, LINC00857, LINC00863, MIR346, DUSP13, CCSER2, FAM35A, ZMIZ1, RGR, RPS24, LOC642361, FAM25A, SFTPD, NA NA NA NA NA NA NA NA NA LTS-033 BEND3P3, SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, SFTPA2, VDAC2, MMRN2, TMEM254, TSPAN14, C10orf11, FAM213A, DYDC2, ZNF503, MBL1P, PAPSS2, CDHR1, DLG5, OPN4, MINPP1) 0.415534468305805 118 0.103013694415564 0.913333647371962 4653 0.315337569840815 3 2 1 -6.81112118524301 LTS-033 NA NA NA NA LTS-033 chr10 89463461 89487126 23666 * PAPSS2 0 1 NA 0.91825633646602 47 0.423613325768598 3 3 0 -5.76444417083058 LTS-033 chr10 89487127 91474912 1987786 * c(KLLN, FAS-AS1, MIR4679-1, MIR4679-2, ANKRD22, LIPJ, CFL1P1, IFIT5, FLJ37201, LIPM, IFIT2, IFIT1, IFIT3, FAS, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, RNLS, PTEN, STAMBPL1, ACTA2, LIPK, LIPN, ATAD1, LIPF, CH25H, PAPSS2, KIF20B) 0.28424133357635 14 0.196094799343762 0.880616575871404 1704 0.230625151777743 3 3 0 -6.83742709811967 LTS-033 chr10 91474913 93221077 1746165 * c(HECTD2-AS1, LINC00502, RPP30, NUDT9P1, HECTD2, ANKRD1, HTR7, LINC00865, PCGF5, KIF20B) 0.466 1 NA 0.905822827455591 591 0.252040325848683 3 3 0 -5.78383352635925 LTS-033 chr10 93221078 104816766 11595689 * c(TLX1NB, C10orf131, PLCE1-AS1, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4685, MIR5692C2, ACTR1A, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, ABCC2, COX15, CPN1, ACSM6, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, NA NA NA NA NA NA NA NA NA LTS-033 DNTT, FGF8, CPEB3, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, DPCD, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, R3HCC1L, POLL, GOT1, BLOC1S2, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, FFAR4, CYP26C1, IDE, KIF11, CC2D2B, LBX1-AS1, GOLGA7B, ARL3, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, EXOC6, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, PI4K2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, FBXW4, SLIT1, SNORA12, MIR608, TLL2, ENTPD1-AS1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, UBTD1, TNKS2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, BTAF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PDLIM1, LGI1, NOLC1, OPALIN, ENTPD1, ZNF518A) 0.429334064483687 233 0.0968295224379891 0.889332141212446 13533 0.242800803263358 3 2 1 -7.12397329849314 LTS-033 NA NA NA NA LTS-033 chr10 104816767 104828296 11530 * CNNM2 NA 0 NA 1.085 1 NA NA NA NA NA LTS-033 chr10 104828297 105253811 425515 * c(MIR1307, CALHM3, NT5C2, PDCD11, CALHM1, CALHM2, CNNM2, TAF5, RPEL1, PCGF6, USMG5, INA, NEURL1) 0.453191060020349 10 0.0487520939721225 1.00973519276171 794 0.249871550323312 4 2 2 -7.24960635394317 LTS-033 chr10 105253812 113915070 8661259 * c(MIR936, SH3PXD2A-AS1, ADD3-AS1, MIR4680, MIR4482, SMNDC1, SORCS1, GSTO2, SFR1, ADD3, COL17A1, ADRA2A, CFAP58, DUSP5, SORCS3, PDCD4, RBM20, PDCD4-AS1, MXI1, GPAM, RPL13AP6, MIR609, XPNPEP1, OBFC1, CFAP43, SHOC2, ITPRIP, SMC3, NEURL1, BBIP1, GSTO1, SH3PXD2A, SLK) 0.436967290149359 45 0.0771308215719477 0.862139156163728 3037 0.212705876079745 3 2 1 -7.6289940375774 LTS-033 chr10 113915071 113916311 1241 * GPAM 0.392 1 NA 1.03209938220662 25 0.269968312955428 4 4 0 -5.76444449506081 LTS-033 chr10 113916312 117823764 3907453 * c(MIR2110, MIR4295, MIR4483, TRUB1, VTI1A, ADRB1, ATRNL1, GFRA1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, NRAP, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.407856074529201 25 0.128153878859232 0.887250840082848 2858 0.222739851346254 3 2 1 -6.88023987333182 LTS-033 chr10 117823765 117823798 34 * GFRA1 NA 0 NA 0.946 1 NA NA NA NA NA LTS-033 chr10 117823799 119308375 1484577 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.417826239336764 22 0.115599472729066 0.967431859332263 1284 0.25298356299619 3 2 1 -6.77237117048834 LTS-033 chr10 119308376 122263189 2954814 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.44472657634405 37 0.0874497367432084 0.859305047252869 1646 0.709017691003281 2 1 1 -6.87309748020778 LTS-033 chr10 122263190 122263266 77 * PLPP4 NA 0 NA 0.984 1 NA NA NA NA NA LTS-033 chr10 122263267 127491165 5227899 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, PSTK, MMP21, CPXM2, CTBP2, DMBT1, PLPP4, FAM24B, FGFR2, FAM175B, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, HTRA1, PLEKHA1, LHPP, IKZF5, UROS, C10orf88, BUB3, FAM53B) 0.393098630694915 89 0.121195207600178 0.915754317646488 3436 0.322724898024082 3 2 1 -6.74959711057987 LTS-033 chr10 127491166 127495712 4547 * UROS 0 1 NA 0.966430684110932 13 0.381264865199899 3 3 0 -5.76442746741634 LTS-033 chr10 127495713 127585179 89467 * c(MIR4484, DHX32, BCCIP, UROS, FANK1) 0.32073932610898 11 0.179971361358109 0.899520509566534 201 0.278474867163611 2 2 0 -6.75506056564349 LTS-033 chr10 127585180 127668317 83138 * c(FANK1-AS1, FANK1) 0.469 1 NA 1.24449348528035 8 0.288430605667489 5 5 0 -5.76442182190143 LTS-033 chr10 127668318 134693137 7024820 * c(MIR378C, MIR4297, LINC00601, GLRX3, DPYSL4, C10orf90, CTAGE7P, CLRN3, C10orf91, PWWP2B, DOCK1, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, FOXI2, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, PTPRE, NPS, FAM196A, BNIP3, LRRC27, ADAM12, NKX6-2, FANK1) 0.451090291899779 116 0.0576863741807105 0.918010217439003 2803 0.268110666000681 3 2 1 -7.29744594048619 LTS-033 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.51 1 NA NA NA NA NA LTS-033 chr10 134694406 134756359 61954 * CFAP46 0.201841221038288 2 0.251730014102411 0.483115455711326 165 0.285302996052514 2 2 0 -6.92577191185921 LTS-033 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.582 1 NA NA NA NA NA LTS-033 chr10 134884462 135020315 135854 * c(ADGRA1, KNDC1) 0.449512954906766 27 0.0391394977599392 0.968030007032821 297 0.306538614228162 4 2 2 -7.3749387509415 LTS-033 chr10 135020316 135044089 23774 * c(UTF1, KNDC1) 0 1 NA 0.95758068382726 93 0.233661592547207 3 3 0 -5.76452747467483 LTS-033 chr10 135044090 135473026 428937 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, MTG1, SYCE1) 0.322453590724707 30 0.145582050175608 0.929166509287654 1018 0.295800284881259 2 2 0 -6.83499921814138 LTS-033 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.769 1 NA NA NA NA NA LTS-033 chr11 193025 193865 841 * SCGB1C1 0.487 1 NA 0.835899266493754 9 0.0424381903478459 2 2 0 -5.76568917280132 LTS-033 chr11 193866 1013987 820122 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.422613518806016 74 0.0471849143494991 0.868169592740104 2892 0.28791242705723 2 1 1 -6.86137310043919 LTS-033 chr11 1013988 1016834 2847 * MUC6 0.263 1 NA 0.897928016687861 23 0.168982773872406 3 3 0 -5.76452135615194 LTS-033 chr11 1016835 1026146 9312 * MUC6 0.31019921067747 39 0.0913947334420571 0.887308482328058 127 0.230292863598988 2 2 0 -6.74287361234699 LTS-033 chr11 1026147 1026278 132 * MUC6 NA 0 NA 0.959 1 NA NA NA NA NA LTS-033 chr11 1026279 1756312 730034 * c(FAM99B, DUSP8, TOLLIP-AS1, KRTAP5-AS1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, TOLLIP, MUC5B, MOB2, BRSK2) 0.341352400168915 62 0.117165112853681 0.975250968879691 1404 0.327577737812787 4 3 1 -6.79144058891637 LTS-033 chr11 1756313 1770224 13912 * c(IFITM10, MOB2) 0.402 1 NA 0.874571467376066 19 0.151800326683728 3 3 0 -5.7661583364134 LTS-033 chr11 1770225 6261825 4491601 * c(MIR675, MRPL23-AS1, MIR4298, LOC100506082, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, TRIM22, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52W1, OR56A4, OR56A1, CNGA4, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, CTSD, C11orf42, OR56B4, OR52A1, OR52B2, OR51F1, PGAP2, OR51B5, OR51V1, H19, MRGPRG-AS1, C11orf21, TRPM5, HBB, HBBP1, NA NA NA NA NA NA NA NA NA LTS-033 HBD, HBE1, HBG1, HBG2, OR52L1, OR52B6, IGF2, INS, KCNQ1, MRGPRG, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, RHOG, OR51T1, OR51A4, OR51A2, IFITM10, LSP1, ART1, ASCL2, TRIM6-TRIM34, NAP1L4, NUP98, SLC22A18, SLC22A18AS, UBQLN3, IGF2-AS, TRIM34, TRIM68, KCNQ1DN, MMP26, CHRNA10, MRPL23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR483, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, ZNF195, OR51G1, OR51B4, OR51B2, OR52N1, OR51G2, OR51E2, MOB2, CARS, FAM160A2, TRIM5, SYT8, CD81) 0.404698118404063 211 0.0718996859425469 0.928199527567032 5347 0.276875988469369 3 2 1 -6.75006218634366 LTS-033 NA NA NA NA LTS-033 chr11 6261826 17417267 11155442 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR2AG2, OR10A2, NA NA NA NA NA NA NA NA NA LTS-033 OVCH2, ILK, GALNT18, NCR3LG1, KCNJ11, GVINP1, INSC, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RIC3, CALCB, SBF2, FAR1, BTBD10, PPFIBP2, MICALCL, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.398661919217066 159 0.0893253811871283 0.890269676229488 9610 0.31183703582404 3 2 1 -6.91325010155502 LTS-033 NA NA NA NA LTS-033 chr11 17417268 17668675 251408 * c(USH1C, OTOG, ABCC8) 0.375191177130727 34 0.124965435506388 1.0372394281426 702 0.462399366982435 3 2 1 -6.75362892747893 LTS-033 chr11 17668676 18885051 1216376 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, SERGEF, IGSF22, GTF2H1, KCNC1, LDHA, LDHC, MYOD1, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, PTPN5) 0.422336637856375 38 0.0583831704739867 0.872260315799058 1809 0.241288456184843 2 1 1 -6.9213412215434 LTS-033 chr11 18885052 19076221 191170 * c(MRGPRX2, MRGPRX1) NA 0 NA 0.443072849757721 40 0.316085706285414 0 NA NA -5.76805144571191 LTS-033 chr11 19076222 31128573 12052352 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, ARL14EP, MUC15, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, GAS2, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.389517875535926 95 0.10550966583999 0.962759121757859 3636 0.266235827342135 3 2 1 -6.80531713000214 LTS-033 chr11 31128574 31131731 3158 * c(DCDC5, DCDC1) NA 0 NA 0.782 1 NA NA NA NA NA LTS-033 chr11 31131732 33694645 2562914 * c(DCDC5, HIPK3, EIF3M, DNAJC24, CSTF3, IMMP1L, KIAA1549L, ELP4, LINC00294, CSTF3-AS1, DCDC1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, TCP11L1, RCN1, WT1, PRRG4, QSER1, DEPDC7) 0.398027678308404 53 0.0923657893491415 0.907861538168296 2026 0.234025974158311 3 2 1 -6.76307352109401 LTS-033 chr11 33694646 33719821 25176 * c(C11orf91, KIAA1549L) 0.449 1 NA 0.811566225327361 25 0.105819216906319 2 2 0 -5.76636462696829 LTS-033 chr11 33719822 47442305 13722484 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, ABTB2, PAMR1, FBXO3, EHF, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, MYBPC3, APIP, HSD17B12, PHF21A, NA NA NA NA NA NA NA NA NA LTS-033 ACP2, TRIM44, NAT10, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.410806914855548 113 0.0559376218755073 0.90540559473324 6981 0.327056594935871 3 2 1 -6.87941609453409 LTS-033 NA NA NA NA LTS-033 chr11 47442306 47447816 5511 * PSMC3 NA 0 NA 0.994850357359737 46 0.208533949784107 3 NA NA -5.76467814128594 LTS-033 chr11 47447817 47598891 151075 * c(CELF1, PTPMT1, NDUFS3, KBTBD4, PSMC3, RAPSN) 0 1 NA 0.821118079534203 201 0.267211127605902 2 2 0 -5.76755331791413 LTS-033 chr11 47598892 48346419 747528 * c(C1QTNF4, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PTPRJ, AGBL2) 0.286112607019194 8 0.172473962838287 0.864027663545966 988 0.873807834100824 2 2 0 -6.74262051480956 LTS-033 chr11 48346420 48346423 4 * character(0) 0.381 1 NA 3.257 1 NA NA NA NA NA LTS-033 chr11 48346424 48387978 41555 * c(OR4C3, OR4C45) 0.335006634672155 96 0.0667765289945607 1.74209275760716 172 1.23356335636301 13 9 4 -6.73929967866155 LTS-033 chr11 48387979 48387985 7 * character(0) NA 0 NA 0.905 1 NA NA NA NA NA LTS-033 chr11 48387986 51516257 3128272 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.385448711184749 26 0.0528164310098229 0.995610808637377 478 0.569538843156634 3 2 1 -6.76915411105673 LTS-033 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.877842990844908 6 0.106954195803624 3 NA NA -5.7670040870896 LTS-033 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.448 1 NA 0.749185497870572 21 0.5661585130551 2 2 0 -5.76465935196668 LTS-033 chr11 55111585 56468835 1357251 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.314387704979693 73 0.14147034341858 1.02010166341625 1075 0.484265580640195 4 3 1 -6.79258250915297 LTS-033 chr11 56468836 56508604 39769 * OR8U8 0.474 1 NA 0.903925445458847 5 0.688289328698332 3 3 0 -5.76447712412638 LTS-033 chr11 56508605 57414554 905950 * c(PRG3, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, TIMM10, OR9G4, SLC43A3, RTN4RL2, OR5AK2, MIR130A, P2RX3, PRG2, SSRP1, SERPING1, SLC43A1, TNKS1BP1, UBE2L6) 0.410230199681615 11 0.0513233953386846 0.947763139781026 1067 0.229612816787346 3 2 1 -6.79449853827649 LTS-033 chr11 57414555 57414670 116 * YPEL4 NA 0 NA 0.699 1 NA NA NA NA NA LTS-033 chr11 57414671 61730207 4315537 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, DTX4, MS4A6E, ZDHHC5, TKFC, DKFZP434K028, GIF, PRPF19, SELENOH, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5B2, NA NA NA NA NA NA NA NA NA LTS-033 OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, OR5B3, OSBP, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, MS4A7, RAB3IL1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, STX3, MIR611, TCN1, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SYT7, CD5, GLYATL1, CD6, MS4A1, MS4A3, LPXN, FADS2) 0.392276449405564 75 0.0823907783696717 0.917470856063856 6096 0.24305296281371 3 2 1 -6.75363131356077 LTS-033 NA NA NA NA LTS-033 chr11 61730208 63680045 1949838 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, SCGB1D2, SCGB1D1, PLA2G16, CHRM1, SLC22A9, HRASLS5, C11orf84, EEF1G, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, FTH1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, RCOR2, INCENP, TMEM179B, SLC22A25, SLC22A10, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, SCGB1A1, BEST1, METTL12, AHNAK, TMEM223, LBHD1, NA NA NA NA NA NA NA NA NA LTS-033 UQCC3, ZBTB3, ASRGL1, INTS5, LGALS12, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8) 0.410588967594932 28 0.0896034473543166 0.87371641175139 3846 0.271549743357906 3 2 1 -6.83156056870003 LTS-033 NA NA NA NA LTS-033 chr11 63680046 63884474 204429 * c(COX8A, FLRT1, RCOR2, MACROD1, OTUB1, NAA40) 0.351 1 NA 0.883541498770062 289 0.178350955402443 3 3 0 -5.77792949598185 LTS-033 chr11 63884475 67398881 3514407 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CDCA5, BATF2, SLC22A12, CATSPER1, CST6, CTSW, GRK2, GPHA2, ESRRA, FAU, TIGD3, FKBP2, KDM2A, ATG2A, CLCF1, FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, NA NA NA NA NA NA NA NA NA LTS-033 C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, TBC1D10C, MALAT1, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, OVOL1, KCNK4, PC, CABP2, TRMT112, PLCB3, SSH3, PPP1CA, CCDC87, PPP2R5B, CDC42BPG, PACS1, SLC22A11, GPR137, CABP4, CD248, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CORO1B, BAD, SCYL1, CARNS1, POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RBM4, RELA, DPF2, RPS6KB2, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, C11orf80, TMEM134, MUS81, FOSL1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, NRXN2, PITPNM1, RIN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CCS, RCE1) 0.406437450905024 202 0.072744729534791 0.873955060149533 10864 0.227800211678458 3 2 1 -6.94462515525218 LTS-033 NA NA NA NA LTS-033 chr11 67398882 67402744 3863 * TBX10 0.471 1 NA 0.964184426786065 39 0.12038990860727 3 3 0 -5.76453606491 LTS-033 chr11 67402745 67922918 520174 * c(MIR4691, TCIRG1, CHKA, ALDH3B1, ALDH3B2, TBX10, NDUFS8, FAM86C2P, UNC93B1, ACY3) 0.382929385710638 5 0.0560508697523955 0.897451925776543 441 0.171832596165357 3 2 1 -6.77594403638834 LTS-033 chr11 67922919 85347094 17424176 * c(KCNE3, MIR708, LOC100129216, LOC100133315, KCTD21-AS1, MIR548K, SNORA70E, MIR4300, MIR3165, MIR3664, RAB30-AS1, TPBGL, NDUFC2-KCTD14, MIR4696, MIR4692, IL18BP, MIR5579, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, CLNS1A, CPT1A, XRRA1, DHCR7, DLG2, B3GNT6, CTTN, MRPL21, TPCN2, GDPD4, DDIAS, ORAOV1, SHANK2-AS3, LRTOMT, FAM181B, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, NA NA NA NA NA NA NA NA NA LTS-033 DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, ANKRD42, OR2AT4, IGHMBP2, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NUMA1, OMP, P2RY2, P2RY6, PAK1, GAL, KMT5B, COA4, PDE2A, PPME1, PCF11, MRPL48, RSF1, C11orf24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, ACER3, PRCP, TMEM126B, THAP12, EMSY, USP35, KRTAP5-8, PLEKHB1, RAB6A, CCND1, CCDC90B, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, INTS4, TESMIN, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.389239252898822 218 0.0905984201447183 0.910266167702206 12358 0.247157041881008 3 2 1 -6.87976943456234 LTS-033 NA NA NA NA LTS-033 chr11 85347095 85988955 641861 * c(CCDC83, CCDC89, SYTL2, TMEM126B, CREBZF, PICALM, TMEM126A, EED) 0.424321675691652 10 0.0382936025988676 0.822819536767775 741 0.173634352186165 2 1 1 -6.88419343127689 LTS-033 chr11 85988956 85988961 6 * EED NA 0 NA 0.879 1 NA NA NA NA NA LTS-033 chr11 85988962 111338445 25349484 * c(NAALAD2, LOC100132078, WTAPP1, MIR1304, MIR1260B, MIR3920, LOC100506368, CASP12, MIR4490, MIR4491, MIR4693, GRM5-AS1, JRKL-AS1, LOC101054525, YAP1, CTSC, ME3, GPR83, PRSS23, CARD16, TMEM123, SLC36A4, FAT3, TRIM64, COLCA2, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, AMOTL1, DEUP1, C11orf65, DDX10, FOLH1B, FDX1, ENDOD1, EXPH5, RAB38, PANX1, FUT4, ANGPTL5, CHORDC1, GRIA4, C11orf54, GRM5, GUCY1A2, NA NA NA NA NA NA NA NA NA LTS-033 BIRC2, BIRC3, C11orf53, HEPHL1, ACAT1, VSTM5, TRIM77, IZUMO1R, KDM4E, C11orf87, COLCA1, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, MTNR1B, ATM, NPAT, NOX4, HIKESHI, CWC15, PGR, CNTN5, POU2AF1, SLC35F2, RAB39A, BTG4, ANKRD49, ELMOD1, KDM4D, SMCO4, TRIM49, CEP126, ARHGAP20, CARD18, RDX, CCDC81, AASDHPPT, SCARNA9, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, LOC643733, LOC643923, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMEM135, SNORA8, SLN, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, DYNC2H1, CCDC82, PDGFD, CUL5, FZD4, CASP1, CASP4, CASP5, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, CEP295, ZC3H12C, OR7E2P, JRKL, EED, MTMR2, ALKBH8, MMP20, MED17, CEP57) 0.410607906745225 243 0.0885728823869773 0.929575822204276 11758 0.287501248347828 3 2 1 -6.76757123648403 LTS-033 NA NA NA NA LTS-033 chr11 111338446 119534298 8195853 * c(LOC100131626, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, LAYN, TTC36, DDX6, DLAT, DPAGT1, DRD2, MPZL3, CEP164, PHLDB1, SIK2, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, HSPB2, APOA1, HTR3A, NA NA NA NA NA NA NA NA NA LTS-033 APOA4, CCDC84, APOC3, PLET1, IL10RA, IL18, ARCN1, C11orf88, MIR34B, MIR34C, MCAM, KMT2A, NCAM1, NNMT, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, USP28, PTS, NECTIN1, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, CLDN25, C11orf1, RPL23AP64, TAGLN, THY1, UPK2, ZBTB16, RNF26, NLRX1, ALG9, PDZD3, TMPRSS5, MFRP, BCO2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMPRSS13, BUD13, TMEM25, DIXDC1, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, FDXACB1, UBE4A, C2CD2L) 0.391371478472404 160 0.0860846117337965 0.892158306411869 9721 0.327005630441085 3 2 1 -6.84447748602535 LTS-033 NA NA NA NA LTS-033 chr11 119534299 134856661 15322363 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, NA NA NA NA NA NA NA NA NA LTS-033 LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, TP53AIP1, HEPN1, ROBO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.405444672021329 328 0.0856874619052815 0.941889736439089 10550 0.319552867174107 3 2 1 -6.74589363340506 LTS-033 NA NA NA NA LTS-033 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.941 1 NA NA NA NA NA LTS-033 chr12 90914 2791756 2700843 * c(LINC00940, LOC100288778, LINC00942, MIR3649, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, CACNA1C, ADIPOR2, WNT5B, CCDC77, CACNA2D4) 0.409500533706686 73 0.0950576349241976 1.214847468183 2667 0.80576570018199 5 3 2 -6.73864455069533 LTS-033 chr12 2791757 2794884 3128 * c(CACNA1C-AS1, CACNA1C) NA 0 NA 1.95 1 NA NA NA NA NA LTS-033 chr12 2794885 2851311 56427 * c(CACNA1C-AS1, CACNA1C) 0.367391430673284 2 0.0608111831820431 2.03430698242291 65 0.363668800083051 9 6 3 -6.73477281077021 LTS-033 chr12 2851312 2870417 19106 * LOC283440 NA 0 NA 1.361 1 NA NA NA NA NA LTS-033 chr12 2870418 6427971 3557554 * c(LOC100507424, AKAP3, RAD51AP1, TSPAN9, FGF6, FKBP4, FOXM1, GALNT8, LOC283440, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, TEAD4, TULP3, VWF, FGF23, RHNO1, NRIP2, CRACR2A, DYRK4, CCND2, CD9) 0.414407174781032 103 0.104865995549815 1.22182617487056 2851 0.368102642984929 5 3 2 -6.74939016168033 LTS-033 chr12 6427972 9581773 3153802 * c(LINC00987, LPCAT3, KLRG1, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, SLC2A14, A2ML1, A2M-AS1, CLEC4C, ZNF384, DSTNP2, ATN1, PHC1, PIANP, A2M, ENO2, LINC00612, IFFO1, GAPDH, NECAP1, CLEC4E, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, LAG3, LTBR, MIR141, MIR200C, M6PR, ZNF705A, FAM66C, DDX12P, NOP2, COPS7A, CLEC4A, ING4, MRPL51, C1RL, TAPBPL, NA NA NA NA NA NA NA NA NA LTS-033 FAM90A1, PLEKHG6, FOXJ2, LPAR5, AICDA, RIMKLB, PTMS, PTPN6, PEX5, PZP, SCNN1A, POU5F1P3, LOC642846, SLC2A3, FAM86FP, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, C3AR1, NANOG, MFAP5, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD163, CD27, CLEC6A, GDF3, CLSTN3, NCAPD2) 0.408076782337076 131 0.107401461208132 1.1588849322886 5937 0.356424728757456 4 2 2 -6.78249866943283 LTS-033 NA NA NA NA LTS-033 chr12 9581774 9582062 289 * DDX12P NA 0 NA 1.78 1 NA NA NA NA NA LTS-033 chr12 9582063 9717935 135873 * DDX12P NA 0 NA 2.04904386080349 111 0.538518474995564 10 NA NA -5.76443151926705 LTS-033 chr12 9717936 9747240 29305 * character(0) NA 0 NA 0.86 1 NA NA NA NA NA LTS-033 chr12 9747241 10573279 826039 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.4170770326547 34 0.130965535464491 1.12236563468052 1104 0.304956526781671 4 2 2 -6.73996317873832 LTS-033 chr12 10573280 10574832 1553 * KLRC3 NA 0 NA 2.496 1 NA NA NA NA NA LTS-033 chr12 10574833 10588456 13624 * c(KLRC2, KLRC3) 0.425660363107852 7 0.0255193670618629 2.06984796449533 55 0.788212331884423 17 9 8 -7.02538923279945 LTS-033 chr12 10588457 10962115 373659 * c(KLRA1P, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, MAGOHB, STYK1, YBX3) 0.454987242477616 22 0.0321608847953925 1.13059558001432 408 0.423636348804121 4 2 2 -7.82992860528007 LTS-033 chr12 10962116 11174202 212087 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R9, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2) 0.291 1 NA 1.12884328424118 251 0.212913673844495 4 4 0 -5.76720856037232 LTS-033 chr12 11174203 11214038 39836 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.302802130010705 21 0.0673911114670318 1.28702681036939 71 0.485515803214505 5 4 1 -6.74322562801239 LTS-033 chr12 11214039 11214066 28 * c(PRH1-PRR4, TAS2R46, PRB4) 0.229 1 NA 2.784 1 NA NA NA NA NA LTS-033 chr12 11214067 11285824 71758 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) 0.238280263160112 25 0.0521575497890766 1.87996030797994 67 0.673211869784823 12 10 2 -6.74199097691524 LTS-033 chr12 11285825 11285832 8 * c(PRH1-PRR4, PRB4) NA 0 NA 0.804 1 NA NA NA NA NA LTS-033 chr12 11285833 11461553 175721 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB3, PRB4) 0.238223056001089 4 0.0543721742560782 1.206389920033 85 0.324724859617772 3 3 0 -6.82595950326215 LTS-033 chr12 11461554 11506893 45340 * c(PRB1, PRB4) 0.5 1 NA 1.26233627959895 17 0.228472034586807 5 5 0 -5.76446039590219 LTS-033 chr12 11506894 27789172 16282279 * c(MIR920, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, C12orf77, EMP1, EPS8, ETV6, STK38L, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, ITPR2, KCNJ8, KRAS, RPL13AP20, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, NA NA NA NA NA NA NA NA NA LTS-033 HEBP1, GOLT1B, DERA, DDX47, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, PRB1, ETNK1, GPRC5D, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, FAM234B, PTPRO, BCAT1, RECQL, ST8SIA1, PRB2, SLCO1A2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5 NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ) 0.412765251313116 167 0.0915058000860622 1.19815412662368 8246 0.335952268366473 5 3 2 -6.89253319021827 LTS-033 NA NA NA NA LTS-033 chr12 27789173 27789246 74 * PPFIBP1 0.26 1 NA 3.72671231867753 7 13.5657593559949 20 20 0 -5.7644101349656 LTS-033 chr12 27789247 27848331 59085 * PPFIBP1 0.262404967050626 9 0.172693691578793 1.22954631563207 201 0.353487533047349 6 5 1 -6.74294739934653 LTS-033 chr12 27848332 27863693 15362 * c(REP15, PPFIBP1) 0.414 1 NA 1.24661211377171 35 0.270278698365069 5 5 0 -5.76441106396668 LTS-033 chr12 27863694 32795421 4931728 * c(MANSC4, LINC00941, DDX11-AS1, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, OVCH1, H3F3C, TSPAN11, ERGIC2, KIAA1551, CCDC91, FAR2, PTHLH, KLHL42, FAM60A, MRPS35, BICD1, CAPRIN2, FLJ13224, TMTC1) 0.430629773229603 58 0.0394431444676137 1.21061369128458 2722 0.332608742070731 5 3 2 -7.05785741882359 LTS-033 chr12 32795422 32798379 2958 * FGD4 0 1 NA 1.24012776207895 60 0.269146466331964 5 5 0 -5.76441167449859 LTS-033 chr12 32798380 33529351 730972 * c(DNM1L, FGD4, SYT10, YARS2, PKP2) 0.344430952743889 9 0.180143075852995 1.26061153213405 376 0.419380468807289 5 4 1 -6.75312259278632 LTS-033 chr12 33529352 34182671 653320 * c(SYT10, ALG10) NA 0 NA 1.24512081665654 123 0.318422081130219 5 NA NA -5.76446926876908 LTS-033 chr12 38710341 38710523 183 * character(0) 0.422 1 NA 0.570357507607531 3 0.108684558854206 1 1 0 -5.76448751171813 LTS-033 chr12 38710524 78225111 39514588 * c(HOTAIR, LOC100130075, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1279, MIR1228, MIR1293, LOC100335030, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, CTDSP2, YAF2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, CCT2, AVIL, PTGES3, FRS2, OS9, GLIPR1, NA NA NA NA NA NA NA NA NA LTS-033 ATF7, CPSF6, KRR1, BAZ2A, WIF1, ADCY6, IRAK3, GALNT6, NXPH4, XPOT, KRT71, GPR182, LARP4, SLC2A13, MBD6, OSBPL8, ARHGEF25, C12orf56, AGAP2, DCD, RAB3IP, MUCL1, LRRK2, FAM186A, OR2AP1, OR10P1, SDR9C7, LRIG3, RHEBL1, C12orf54, ZNF641, OR10AD1, TPH2, SP7, GTSF1, OR10A7, KRT74, CNTN1, COL2A1, CPM, ASB8, MYL6B, KRT72, CS, PRICKLE1, BCDIN3D, ALG10B, GLIPR1L2, CPNE8, BEST3, E2F7, KRT80, C12orf66, CSRP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ZFC3H1, ANO6, ARID2, EIF4B, CELA1, RPSAP52, ERBB3, ABCD2, COPZ1, PHLDA1, R3HDM2, RAB21, FAIM2, MON2, DDN, NEMP1, TBC1D30, ESYT1, TNS2, ZDHHC17, KCNH3, GRIP1, CBX5, ANP32D, SMUG1, LEMD3, STAC3, MSRB3, OR6C74, OR6C3, LINC00935, GLIPR1L1, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, KCNMB4, GLI1, GNS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 GPD1, LOC283332, LOC283335, ZNF740, RASSF3, OR6C6, ANKRD52, SLC39A5, SPRYD4, TRHDE-AS1, C12orf80, LINC00592, LINC01465, DPY19L2, C12orf40, GXYLT1, TMPRSS12, KRT6C, ORMDL2, TBK1, RACGAP1, SENP1, PDZRN4, TRHDE, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, FAM19A2, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, IFNG, AMIGO2, IGFBP6, AQP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, KCNC2, LRRC10, ARF3, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FLJ41278, FIGNL2, OR6C65, OR6C68, LRP1, MIRLET7I, LYZ, MIR196A2, MIR26A2, ASIC1, MARS, MDM2, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MYL6, MYO1A, ATF1, NAB2, NACA, NAP1L1, NELL2, NFE2, CNOT2, SLC11A2, PA2G4, ATP5B, IL22, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, PPHLN1, IL23A, HDAC7, TMBIM4, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, PRIM1, KIF21A, SLC48A1, PRKAG1, LMBR1L, IL26, CAND1, PRPH, MDM1, NDUFA4L2, NUP107, SMAGP, PPM1H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SRGAP1, TWF1, DIP2B, CALCOCO1, NCKAP5L, PTPRB, PTPRR, NEUROD4, RAB5B, RAP1B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, SHMT2, TBC1D15, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, SUOX, TAC3, TARBP2, SNORD59B, MIR548C, MIR615, TMBIM6, TFCP2, TSPAN8, MRS2P2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TUBA1A, TMEM106C, NABP2, RPAP3, BBS10, PIP4K2C, DNAJC22, ADAMTS20, KMT2D, AAAS, YEATS4, HMGA2, SLC38A1, CSRNP2, PUS7L, THAP2, INHBE, RACGAP1P, FAM186B, TMEM117, LLPH, PYM1, SARNP, SOAT2, DYRK2, CAPS2, TUBA1C, ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, LGR5, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, NAV3, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, ATP23, PCED1B, SCAF11, SLC16A7, HELB, MARCH9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2, USP15) 0.389183399400231 578 0.0992882457863005 0.908308968511445 37071 0.510756779193562 3 2 1 -6.8239602797131 LTS-033 NA NA NA NA LTS-033 chr12 78225112 78225186 75 * NAV3 0.38 1 NA 1.441 1 NA NA NA NA NA LTS-033 chr12 78225187 88900985 10675799 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.352393761630894 26 0.157911620851665 0.980996286521873 3395 0.343278780894206 3 2 1 -6.88393768362103 LTS-033 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.851 1 NA NA NA NA NA LTS-033 chr12 88909243 110318235 21408993 * c(TMPO-AS1, USP30-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4497, MIR5700, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, DAO, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, NA NA NA NA NA NA NA NA NA LTS-033 ELK3, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, MRPL42, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MVK, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, GLTP, CDK17, NT5DC3, SLC25A3, PMCH, SSH1, PARPBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, TRPV4, RFX4, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, GNPTAB, MTERF2, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, USP30, FAM222A, FAM222A-AS1, GALNT4, CRADD, SOCS2, UBE3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMEM263, WSCD2, SART3, NUAK1, NR1H4) 0.386562522036337 227 0.102288616444597 0.901236641889334 14560 0.352158616815718 3 2 1 -6.89311247046903 LTS-033 NA NA NA NA LTS-033 chr12 110318236 111798553 1480318 * c(LINC01405, ARPC3, RAD9B, FAM109A, PPTC7, CCDC63, CUX2, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, ANAPC7, VPS29, PPP1CC, TCTN1, TCHP, HVCN1, ANKRD13A, GIT2) 0.387286854532187 11 0.131744656610637 0.841156988068406 1987 0.185099608307481 2 1 1 -6.88503899274505 LTS-033 chr12 111798554 112183156 384603 * c(SH2B3, FAM109A, ATXN2, ACAD10, BRAP) 0 1 NA 0.87139218992279 589 0.391418382156103 3 3 0 -5.77245326544304 LTS-033 chr12 112183157 113275643 1092487 * c(TRAFD1, ERP29, ALDH2, RPH3A, HECTD4, MAPKAPK5-AS1, PTPN11, RPL6, NAA25, ACAD10, MAPKAPK5, ADAM1A, TMEM116) 0.265408936671321 8 0.209555141055659 0.859437602281593 1375 0.211255656903603 3 3 0 -6.84510890473932 LTS-033 chr12 113275644 113279748 4105 * RPH3A NA 0 NA 1.281 1 NA NA NA NA NA LTS-033 chr12 113279749 113313470 33722 * RPH3A 0.397 1 NA 0.988845167356063 37 0.242100706839638 3 3 0 -5.76539139722457 LTS-033 chr12 113313471 113319600 6130 * RPH3A 0.406 1 NA 0.916080978433865 15 0.291855753673593 3 3 0 -5.7644331956159 LTS-033 chr12 113319601 120636361 7316761 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19) 0.414667261113716 69 0.0957873839952388 0.906232973856042 5125 0.224538344288001 3 2 1 -6.8596912797456 LTS-033 chr12 120636362 120636525 164 * RPLP0 NA 0 NA 0.815 1 NA NA NA NA NA LTS-033 chr12 120636526 124416597 3780072 * c(MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, NA NA NA NA NA NA NA NA NA LTS-033 DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.407743041729442 149 0.0946061594858442 0.849577916238976 7023 0.220631325574713 2 1 1 -7.04391029970928 LTS-033 NA NA NA NA LTS-033 chr12 124416598 124417926 1329 * DNAH10 NA 0 NA 1.122 1 NA NA NA NA NA LTS-033 chr12 124417927 130650197 6232271 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, DHX37, AACS, UBC, CCDC92, TMEM132C, SCARB1, NCOR2) 0.409518032179203 66 0.0695712694900815 0.917839996091005 2111 0.205191776139151 3 2 1 -6.80280286998606 LTS-033 chr12 130650198 130826725 176528 * c(FZD10, PIWIL1) NA 0 NA 0.535 1 NA NA NA NA NA LTS-033 chr12 130826726 133196875 2370150 * c(LOC100130238, LRCOL1, LINC01257, STX2, P2RX2, RIMBP2, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, EP400, FBRSL1, RAN, SFSWAP, SNORA49, NOC4L, PUS1, ULK1, PIWIL1) 0.457264303145036 54 0.0483123318791412 0.794637514349467 1973 0.208966512994396 2 1 1 -7.32515855792321 LTS-033 chr12 133196876 133217851 20976 * c(P2RX2, POLE) 0.394 1 NA 0.794349436573785 113 0.211807729746889 2 2 0 -5.76448769818733 LTS-033 chr12 133217852 133298105 80254 * c(PGAM5, POLE, PXMP2) 0.152963528705958 9 0.210778780821136 0.781294676450624 327 0.29220576634196 4 4 0 -6.84746114474885 LTS-033 chr12 133298106 133307009 8904 * c(PGAM5, ANKLE2) 0.397 1 NA 0.728610118728738 69 0.189379550736079 2 2 0 -5.76513479997728 LTS-033 chr12 133307010 133812682 505673 * c(ZNF605, ZNF891, ZNF268, ANKLE2, GOLGA3, CHFR, ANHX, ZNF10, ZNF140) 0.418065050761441 46 0.10892232750888 0.750794045692592 1460 0.18140322457525 2 1 1 -6.75348940551981 LTS-033 chr12 133812683 133812708 26 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-033 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.438 1 NA 1.9830217938569 3 0.955412127478678 10 10 0 -5.76453494644396 LTS-033 chr13 19600476 25525488 5925013 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, TPTE2P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.404142666416443 78 0.103218008971097 1.20625311091173 3311 0.346554348315224 5 3 2 -6.77058610649006 LTS-033 chr13 25525489 25670851 145363 * c(PABPC3, TPTE2P1) 0.236 1 NA 1.1023006657486 48 0.52105837081643 4 4 0 -5.76442961548363 LTS-033 chr13 25670852 25672421 1570 * PABPC3 0.176510460850716 19 0.0701251596197535 1.9429768658215 43 1.55282845385042 17 15 2 -6.73322214448941 LTS-033 chr13 25672422 25739662 67241 * PABPC3 0.461 1 NA 1.14164022385867 91 0.298905254487022 4 4 0 -5.76523928212653 LTS-033 chr13 25739663 38211764 12472102 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, PDX1, RASL11A, NA NA NA NA NA NA NA NA NA LTS-033 SHISA2, SERTM1, LINC00547, SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, TRPC4, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, MTMR6, DCLK1, KL, NUP58) 0.415205169180532 103 0.0861958476820329 1.21910911224381 6845 0.363594243151816 5 3 2 -6.78199646771599 LTS-033 NA NA NA NA LTS-033 chr13 38211765 38213137 1373 * TRPC4 NA 0 NA 1.283 1 NA NA NA NA NA LTS-033 chr13 38213138 41185340 2972203 * c(MIR4305, LINC00332, LINC00366, LINC00571, LHFP, STOML3, FOXO1, FREM2, NHLRC3, LINC00548, UFM1, COG6, LINC00598, TRPC4, PROSER1) 0.383694992437763 28 0.100204044474764 1.33146586544342 1074 0.349720763433606 6 4 2 -6.77879469168893 LTS-033 chr13 41185341 41239780 54440 * FOXO1 NA 0 NA 1.188 1 NA NA NA NA NA LTS-033 chr13 41239781 53422016 12182236 * c(LINC00462, TPT1-AS1, MIR759, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, NA NA NA NA NA NA NA NA NA LTS-033 CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.40961344129793 151 0.102728791014551 1.18172990273381 7168 0.830380985218128 5 3 2 -6.76944739467926 LTS-033 NA NA NA NA LTS-033 chr13 53422017 114774932 61352916 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, MYCBP2-AS1, NA NA NA NA NA NA NA NA NA LTS-033 RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, GPC5, RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TGDS, NALCN, SLITRK5, GAS6, FBXL3, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, MZT1, ATP4B, PCCA, PCDH8, PCDH9, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.415894518269135 320 0.0851245388131441 1.23842272027206 13301 0.595508536959823 5 3 2 -6.75760337970983 LTS-033 NA NA NA NA LTS-033 chr13 114774933 115091399 316467 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.400797884655471 16 0.0259332476433888 1.11347366575635 284 0.262174715972227 4 2 2 -6.77074843711822 LTS-033 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 1.01335543444429 29 0.113551555097342 4 NA NA -5.76479443404282 LTS-033 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.355 1 NA 1.48906532433127 5 1.33354441245877 7 7 0 -5.76501009816086 LTS-033 chr14 20201562 20404847 203286 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.323749879156113 10 0.0543245391656069 1.49607800764107 199 0.354281616419488 8 6 2 -6.76105495577241 LTS-033 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.785 1 NA NA NA NA NA LTS-033 chr14 20443534 20529177 85644 * c(OR4K14, OR4L1, OR4K13, OR4K15) 0.374097357424614 15 0.0183139291251222 1.0869499680942 125 1.20836573175402 6 4 2 -6.75230081127218 LTS-033 chr14 20529178 20665790 136613 * c(OR4K17, OR4N5, OR11G2) 0.399 1 NA 0.876509190709741 51 0.184193621485866 3 3 0 -5.77532298159305 LTS-033 chr14 20665791 22471695 1805905 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, NA NA NA NA NA NA NA NA NA LTS-033 TTC5, TOX4) 0.401509337891759 119 0.0722042681927458 0.921963072082414 3385 0.268679341753896 3 2 1 -6.74390137245702 LTS-033 NA NA NA NA LTS-033 chr14 22471696 22978511 506816 * character(0) 0.36131489747489 10 0.0840288310310482 1.15171896775907 573 0.261996479483678 4 3 1 -6.75175946421029 LTS-033 chr14 22978512 22979847 1336 * character(0) NA 0 NA 0.795 1 NA NA NA NA NA LTS-033 chr14 22979848 37135753 14155906 * c(MIR208B, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, MIR4707, PTCSC3, LINC00609, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MDP1, CTSG, DAD1, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, HECTD1, HEATR5A, NGDN, LRP10, NKX2-8, TINF2, CIDEB, NA NA NA NA NA NA NA NA NA LTS-033 IGBP1P1, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OXA1L, PAX9, EMC9, PCK2, GMPR2, SLC22A17, MBIP, HAUS4, PPP2R3C, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 IL25, SRP54, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, AJUBA, ZFHX2, AP1G2, SLC7A7, CARMIL3, PPP1R3E, CPNE6, AKAP6, KIAA0391, REC8) 0.395580749543418 141 0.0782897923785651 0.910177219065875 10612 0.335543193953901 3 2 1 -6.79859107471141 LTS-033 NA NA NA NA LTS-033 chr14 37135754 37140205 4452 * PAX9 0 1 NA 1.35973551279761 7 1.09124660038744 6 6 0 -5.76441267200747 LTS-033 chr14 37140206 38311765 1171560 * c(SLC25A21-AS1, MIR4503, MIPOL1, FOXA1, PAX9, SLC25A21) 0.265729218603237 9 0.202131420395522 0.981411256336153 624 0.360968375063414 3 3 0 -6.74775496264863 LTS-033 chr14 38311766 38725285 413520 * c(CLEC14A, SSTR1) 0.328 1 NA 0.973443692000434 129 0.242254237679033 3 3 0 -5.77038851003589 LTS-033 chr14 38725286 45716626 6991341 * c(SNORD127, LOC100288846, SEC23A, NA, C14orf28, TRAPPC6B, LRFN5, CLEC14A, FKBP3, FAM179B, FBXO33, LINC00639, MIA2, PNN, KLHL28, PRPF39, MIS18BP1, FANCM, FSCB, GEMIN2) 0.391679381616856 29 0.0858300244870539 0.879766735145314 1646 0.263184881118135 3 2 1 -6.96861764251511 LTS-033 chr14 45716627 45759568 42942 * MIS18BP1 NA 0 NA 1.842 1 NA NA NA NA NA LTS-033 chr14 45759569 73989983 28230415 * c(MED6, KTN1-AS1, LOC100289511, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, GPHN, CDKN3, VTI1B, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, RDH12, ADAM21P1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, FAM71D, TMEM229B, ACTN1-AS1, NA NA NA NA NA NA NA NA NA LTS-033 TMEM30B, MDGA2, EIF2S1, LINC01599, ERH, ESR2, NID2, ATG14, ZBTB1, PCNX1, DAAM1, SAMD4A, SYNE2, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, PLEKHG3, SIPA1L1, DCAF4, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, LINC01588, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, HEATR4, FLJ22447, PLEKHD1, MAX, MGAT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, ATL1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, POLE2, GNG2, TMEM260, PPM1A, FBXO34, DNAAF2, C14orf105, EXD2, PPP2R5E, SYNJ2BP, SLC39A9, AP5M1, PRKCH, ACTR10, PSEN1, PSMA3, CCDC177, PSMC6, PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, TRMT5, PYGL, RBM25, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, ZFP36L1, STYX, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, DPF3, SGPP1, TMX1, SYT16, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, PAPLN, NEMF, CHURC1, MAPK1IP1L, AKAP5, RGS6, SUSD6, KIAA0586, DLGAP5) 0.441133113156585 394 0.0993190419643582 1.03658179787994 18411 0.35185382071444 4 2 2 -7.17254391358706 LTS-033 NA NA NA NA LTS-033 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.075 1 NA NA NA NA NA LTS-033 chr14 74003792 74010468 6677 * c(HEATR4, ACOT1) NA 0 NA 0.226075203625065 40 0.287536841563669 0 NA NA -5.7900619480168 LTS-033 chr14 74010469 74060544 50076 * c(ACOT2, ACOT4, HEATR4, ACOT1) NA 0 NA 0.68757970654432 67 0.333469139680047 1 NA NA -5.76686946758285 LTS-033 chr14 74060545 74060550 6 * ACOT4 NA 0 NA 0.987 1 NA NA NA NA NA LTS-033 chr14 74060551 78367045 4306495 * c(MIR1260A, MIR4505, MIR4709, BATF, NPC2, AHSA1, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, LRRC74A, ISM2, SAMD15, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, GPATCH2L, YLPM1, ADCK1, TMEM63C, ZNF410, NGB, ABCD4, VIPAS39, ACOT6, IRF2BPL, SYNDIG1L, TGFB3, LINC01220, NA NA NA NA NA NA NA NA NA LTS-033 ZC2HC1C, BBOF1, SLIRP, DNAL1, RPS6KL1, CIPC, ALKBH1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, SPTLC2, ENTPD5, ACYP1, AREL1) 0.440840919028347 136 0.0945951167403007 1.02565959190983 6358 0.695344922541534 4 2 2 -6.82977705967588 LTS-033 NA NA NA NA LTS-033 chr14 78367046 78374154 7109 * ADCK1 NA 0 NA 1.339 1 NA NA NA NA NA LTS-033 chr14 78374155 88729909 10355755 * c(DIO2-AS1, LINC00911, CEP128, DIO2, FLRT2, GALC, LOC283585, LINC01146, GTF2A1, KCNK10, ADCK1, SEL1L, SNORA79, TSHR, GPR65, STON2, NRXN3) 0.457295417567955 30 0.0371297817076154 1.11617426820978 1773 0.29354518560439 4 2 2 -7.69260971018968 LTS-033 chr14 88729910 88737054 7145 * KCNK10 NA 0 NA 0.994 1 NA NA NA NA NA LTS-033 chr14 88737055 93429060 4692006 * c(SNORA11B, FBLN5, PTPN21, FOXN3, CHGA, TTC8, TC2N, SLC24A4, TTC7B, EML5, FOXN3-AS2, ITPK1, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, KCNK10, NRDE2, PPP4R3A, TDP1, SPATA7, LGMN, KCNK13, PSMC1, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.454300631506753 95 0.0803263263258556 1.01870465776321 4113 0.237515692337242 4 2 2 -7.17427895206509 LTS-033 chr14 93429061 93649383 220323 * c(ITPK1-AS1, ITPK1, MOAP1) 0.39 1 NA 1.02614534826376 47 0.246438864190561 4 4 0 -5.77325780710675 LTS-033 chr14 93649384 94245649 596266 * c(PRIMA1, TMEM251, COX8C, UBR7, BTBD7, UNC79, MOAP1, GON7) 0.272934392013972 9 0.24011634911249 1.0271689084444 851 0.352135894507692 3 3 0 -6.76228032526399 LTS-033 chr14 94245650 94245652 3 * PRIMA1 0.4 1 NA 0.972 1 NA NA NA NA NA LTS-033 chr14 94245653 106067958 11822306 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, DYNC1H1, LINC00638, NA NA NA NA NA NA NA NA NA LTS-033 EIF5, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, SERPINA9, HSP90AA1, IFI27, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CDCA4, ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, SERPINA6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, TECPR2) 0.448009687927627 301 0.0747801713018468 1.04645620738132 12052 0.420418602406395 4 2 2 -6.98364971227789 LTS-033 NA NA NA NA LTS-033 chr14 106067959 106091504 23546 * character(0) 0.443 1 NA 1.00288876571125 9 1.00164516061217 3 3 0 -5.76447414279625 LTS-033 chr14 106091505 106866362 774858 * c(ELK2AP, LINC00226, ADAM6, FAM30A) 0.388795282921386 33 0.144879266611684 1.04454112689236 522 0.564246945114657 4 2 2 -6.74583534947269 LTS-033 chr14 106866363 106866427 65 * character(0) 0.265 1 NA 3.763 1 NA NA NA NA NA LTS-033 chr14 106866428 106940497 74070 * LINC00221 0.421096620311763 16 0.0526981577793127 1.93383962481895 55 0.576194149845778 10 5 5 -6.77453244435844 LTS-033 chr14 106940498 106962915 22418 * LINC00221 NA 0 NA 0.669 1 NA NA NA NA NA LTS-033 chr14 106962916 107283105 320190 * character(0) 0.322796422820255 18 0.0828181920907265 1.27826179065939 131 0.813636758191689 5 4 1 -6.74420480114232 LTS-033 chr14 107283106 107283157 52 * character(0) NA 0 NA 0.969473868254315 3 0.041569219381653 3 NA NA -5.76443005140371 LTS-033 chr15 20169987 20434090 264104 * character(0) 0.368 1 NA 1.23349318240703 17 0.395881490362665 5 5 0 -5.76458880595313 LTS-033 chr15 20434091 22448436 2014346 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.316396228039223 26 0.107364512114285 1.82980460563541 245 1.01711535167268 8 6 2 -6.73762234464778 LTS-033 chr15 22448437 22466126 17690 * character(0) 0.428 1 NA 1.33041128875114 3 0.219344477933683 6 6 0 -5.76508804810917 LTS-033 chr15 22466127 22567047 100921 * REREP3 NA 0 NA 1.46603208290529 25 0.299432034581027 6 NA NA -5.76558049769309 LTS-033 chr15 22567048 22690470 123423 * REREP3 NA 0 NA 0.695 1 NA NA NA NA NA LTS-033 chr15 22690471 29993636 7303166 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-033 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, LOC100289656, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA6L1, GOLGA8IP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P2, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, MAGEL2, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8S, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.43486826056177 66 0.0919886229916872 1.09911710321002 2969 0.337154420955401 4 2 2 -6.78758193235257 LTS-033 NA NA NA NA LTS-033 chr15 29993637 32450812 2457176 * c(LOC100288637, CHRNA7, OTUD7A, FAN1, DKFZP434L187, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, GOLGA8T, TJP1, CHRFAM7A, ARHGAP11B) 0.436229295943648 27 0.097795982182573 0.992582767129596 1094 0.377519813903534 3 2 1 -6.87699001701109 LTS-033 chr15 32450813 32451764 952 * CHRNA7 NA 0 NA 0.059 1 NA NA NA NA NA LTS-033 chr15 32451765 32464313 12549 * CHRNA7 0.317828523538877 2 0.140714249456123 0.459978810418798 50 0.382296457781985 2 2 0 -6.75755857410362 LTS-033 chr15 32464314 35043610 2579297 * c(WHAMMP1, MIR1233-2, TMCO5B, LOC100996255, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, GOLGA8B, EMC4, NOP10, EMC7, AVEN, RYR3, SCG5, GOLGA8O, KATNBL1, ARHGAP11A, SLC12A6) 0.426626908625836 48 0.113017209431394 1.02705219139315 2112 0.406524744312114 4 2 2 -6.78747232492485 LTS-033 chr15 35043611 35044076 466 * character(0) 0 1 NA 1.30190809751971 11 0.672580863675007 5 5 0 -5.76441115567343 LTS-033 chr15 35044077 35375606 331530 * c(ZNF770, GJD2, ACTC1, AQR) 0.311165731458371 9 0.220126731174971 1.04119049210744 440 0.467593446165219 4 3 1 -6.75608764561459 LTS-033 chr15 35375607 35664298 288692 * c(ANP32AP1, DPH6) 0.462 1 NA 1.18620086617247 41 0.271767825946178 5 5 0 -5.77083974910805 LTS-033 chr15 35664299 43823813 8159515 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, RASGRP1, GPR176, CHP1, CHST14, OIP5, TGM7, PLA2G4E, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, CSNK1A1P1, SPRED1, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, RPAP1, GCHFR, RPUSD2, TUBGCP4, FAM98B, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, NA NA NA NA NA NA NA NA NA LTS-033 C15orf54, LTK, MAP1A, MEIS2, EIF2AK4, NDUFAF1, NUSAP1, SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, HAUS2, RMDN3, DNAJC17, PAK6, KNL1, STARD9, VPS18, RAD51, C15orf62, ZNF106, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, TP53BP1, OIP5-AS1, TYRO3, CHAC1, TMEM62, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, DPH6, C15orf57, KNSTRN, BMF, TGM5, LCMT2) 0.445015167575152 174 0.0970197327846147 1.00056617046648 9951 0.23427967257877 3 2 1 -7.25128266161828 LTS-033 NA NA NA NA LTS-033 chr15 43823814 43826665 2852 * c(MAP1A, PPIP5K1) 0 1 NA 1.01939421983314 27 0.552678144179893 4 4 0 -5.76443789287914 LTS-033 chr15 43826666 44044985 218320 * c(CKMT1B, CATSPER2, STRC, PDIA3, CATSPER2P1, CKMT1A, PPIP5K1) 0.34874948531931 16 0.164030027738826 1.01336230788409 492 0.569979453795553 4 3 1 -6.73565548363413 LTS-033 chr15 44044986 44060883 15898 * PDIA3 0.434 1 NA 0.946635813059574 38 0.145599774904864 3 3 0 -5.76445244813225 LTS-033 chr15 44060884 50792874 6731991 * c(MIR147B, GABPB1-AS1, MIR1282, NDUFAF4P1, SERF2-C15ORF63, MIR4716, MIR4712, SERF2, SLC27A2, CASC4, TRIM69, TERB2, NA, DUT, FAM227B, PATL2, FBN1, FGF7, CEP152, EID1, GABPB1, HYPK, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, PDIA3, HDC, USP50, SHC4, CTXN2, DUOXA2, MFAP1, DUOX2, MYEF2, CTDSPL2, DUOX1, FLJ10038, B2M, DTWD1, SQRDL, SERINC4, EIF3J-AS1, SLC12A1, SORD, PIN4P1, SLC30A4, SPATA5L1, ATP8B4, WDR76, NA NA NA NA NA NA NA NA NA LTS-033 SEMA6D, SPG11, ELL3, C15orf48, FRMD5, EIF3J, SHF, DUOXA1, USP8, SLC28A2, COPS2, SECISBP2L) 0.448593577173485 104 0.0574954222615211 0.999235615311322 5774 0.354158848071455 4 2 2 -7.28048321527604 LTS-033 NA NA NA NA LTS-033 chr15 50792875 50836129 43255 * c(USP50, USP8) 0 1 NA 0.978856789141918 37 0.327226487580352 3 3 0 -5.76486176559047 LTS-033 chr15 50836130 51975284 1139155 * c(DCAF13P3, MIR4713, CYP19A1, DMXL2, AP4E1, SCG3, GLDN, USP50, TNFAIP8L3, TRPM7, SPPL2A) 0.276848614899493 14 0.240552626121741 1.01830308615351 1154 0.301105435107742 3 3 0 -6.79135863536676 LTS-033 chr15 51975285 52013171 37887 * SCG3 0.448 1 NA 0.97166937858632 65 0.186859581946938 3 3 0 -5.76524434747906 LTS-033 chr15 52013172 66679139 14665968 * c(LOC100129973, USP3-AS1, BCL2L10, MIR1272, MIR1266, MIR2116, MIR4311, DYX1C1-CCPG1, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, GNB5, ARPP19, CLPX, LACTB, DIS3L, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DYX1C1, MGC15885, ZNF609, DAPK2, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, TMOD2, ANXA2, ONECUT1, RBPMS2, ANKDD1A, AQP9, TEX9, C2CD4B, KBTBD13, UBAP1L, NA NA NA NA NA NA NA NA NA LTS-033 LIPC, MIR190A, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, DPP8, PARP16, TIPIN, MNS1, MYO5C, MAPK6, FAM214A, IGDCC4, RAB27A, RORA, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, RAB11A, ALDH1A2, HERC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CCNB2, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.441856214092151 234 0.0857945809303652 0.989490036388315 12056 0.276844356357657 3 2 1 -7.23207606042731 LTS-033 NA NA NA NA LTS-033 chr15 66679140 66784214 105075 * c(SNAPC5, MAP2K1) 0 1 NA 0.918793787723239 97 0.315257930114375 3 3 0 -5.76466780444761 LTS-033 chr15 66784215 68099455 1315241 * c(IQCH-AS1, SNAPC5, C15orf61, LCTL, SMAD3, SMAD6, ZWILCH, MAP2K5, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, AAGAB) 0.320720459874135 9 0.222909174328918 0.978483534545511 1062 0.301623564797408 3 3 0 -6.80796964695944 LTS-033 chr15 68099456 68349893 250438 * c(SKOR1, PIAS1) 0.446 1 NA 0.946311065613276 144 0.201511936513692 3 3 0 -5.7647339319799 LTS-033 chr15 68349894 86291562 17941669 * c(NR2E3, DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, FEM1B, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, SENP8, HIGD2B, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, DRAIC, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, NA NA NA NA NA NA NA NA NA LTS-033 TBC1D21, ODF3L1, SCAMP5, CT62, GRAMD2, ETFA, FAH, ITGA11, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, SPESP1, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, GLCE, FBXO22, NPTN, EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, HEXA, TMEM202, LOC338963, IDH3A, GOLGA6A, TMC3, IL16, IREB2, ISLR, GOLGA6L5P, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, LOXL1, MIR184, MAN2C1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 LINC00593, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, MYO9A, NEO1, NMB, SCAPER, HDGFRP3, PDE8A, PKM, BTBD1, TM6SF1, PML, ZFAND6, SCAND2P, LRRC49, PAQR5, RPP25, COMMD4, CLN6, ZSCAN2, UACA, IMP3, LARP6, DNAJA4, GOLGA6B, PSMA4, C15orf39, THAP10, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, CELF6, RPLP1, STRA6, LOC642423, GOLGA6L4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR629, MIR630, MIR631, TLE3, LOC729739, ANKRD34C-AS1, TYRO3P, NOX5, EFL1, NEIL1, LMAN1L, PEAK1, THSD4, ANP32A-IT1, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, ANP32A, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PIAS1, PSTPIP1, LOC91450, SLC28A1, CALML4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 UBE2Q2, COX5A, STOML1, HOMER2, KIF23, ZNF592, ARNT2) 0.452632862738521 286 0.0661505204118192 1.01045806103236 15234 0.511457551629638 4 2 2 -7.25067279616006 LTS-033 NA NA NA NA LTS-033 chr15 86291563 86292022 460 * AKAP13 0.465 1 NA 1.02708975431572 9 0.177584330514954 4 4 0 -5.76444466622783 LTS-033 chr15 86292023 89002651 2710629 * c(MIR1276, AKAP13, AGBL1, LINC00052, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.298576098408606 9 0.236456538172334 1.10672479305294 685 0.395678011626398 4 3 1 -6.76525857580113 LTS-033 chr15 89002652 89182596 179945 * c(MIR1179, MIR3529, MRPL46, ISG20, MIR7-2, DET1, AEN, MRPS11) 0.48 1 NA 1.01269299385468 207 0.249777926506261 4 4 0 -5.77465272018327 LTS-033 chr15 89182597 91424574 2241978 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, HAPLN3, MESP2, ACAN, GABARAPL3, MIR9-3HG, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, GDPGP1, MIR9-3, MFGE8, TTLL13P, FURIN, NGRN, RHCG, PLIN1, POLG, FANCI, MESP1, WDR93, RLBP1, BLM, CRTC3, PEX11A, IQGAP1, TICRR) 0.440465649100145 62 0.0466651380979041 1.00198707044993 3155 0.244862744750577 4 2 2 -7.19019772009751 LTS-033 chr15 91424575 91426560 1986 * FURIN 0.486 1 NA 1.01286391574299 41 0.135633126934209 4 4 0 -5.76479227015421 LTS-033 chr15 91426561 91839107 412547 * c(PRC1-AS1, FES, VPS33B, HDDC3, MAN2A2, FURIN, UNC45A, PRC1, RCCD1, SV2B) 0.307324070352761 9 0.232938713923737 1.00094603371032 844 0.292199965400621 4 3 1 -6.77799498046409 LTS-033 chr15 91839108 92293742 454635 * SV2B 0.484 1 NA 0.936892168674334 105 0.153745923439807 3 3 0 -5.76441498877527 LTS-033 chr15 92293743 93010265 716523 * c(SLCO3A1, ST8SIA2) 0.471384726027619 8 0.0265783881054836 1.08637929128114 268 0.265457229213434 4 2 2 -9.05028448119488 LTS-033 chr15 93010266 93015538 5273 * c(C15orf32, ST8SIA2) 0.459805187049278 4 0.0513703870597319 1.45871388648543 52 0.536787645039703 6 3 3 -7.30338002097557 LTS-033 chr15 93015539 93015637 99 * C15orf32 NA 0 NA 1.165 1 NA NA NA NA NA LTS-033 chr15 93015638 102177170 9161533 * c(LINC00930, MIR1469, MIR3175, LINC01578, LOC100507472, MIR4714, SPATA8-AS1, CHD2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, FAM169B, IGF1R, SPATA41, FAM174B, LINC01197, MEF2A, LOC440311, PRKXP1, PCSK6, LINS1, MCTP2, SELENOS, RGMA, NR2F2-AS1, TTC23, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ARRDC4, LINC00923) 0.459098871524387 109 0.0583926536882599 1.03256555858637 3672 0.351677114983792 4 2 2 -7.31618645081183 LTS-033 chr15 102177171 102516544 339374 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, TM2D3) NA 0 NA 1.05042472185273 305 0.272998371357027 4 NA NA -5.7688700453699 LTS-033 chr16 81704 97354 15651 * POLR3K 0.44 1 NA 1.37528082998416 15 0.702777469351836 6 6 0 -5.76441956258498 LTS-033 chr16 97355 2650578 2553224 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-033 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.41281058112369 201 0.0993337191551491 1.15119707491579 8082 0.353275561997642 4 2 2 -6.76690777803022 LTS-033 NA NA NA NA LTS-033 chr16 2650579 2650690 112 * PDPK1 NA 0 NA 0.302 1 NA NA NA NA NA LTS-033 chr16 2650691 2747930 97240 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.818765569998849 132 0.306969708190356 2 NA NA -5.76577188032484 LTS-033 chr16 2747931 16170200 13422270 * c(MIR365A, LOC100128770, SRRM2-AS1, NPIPA5, MIR548X, MTRNR2L4, MIR3180-4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, NTAN1, FOPNL, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, PDXDC1, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, MPV17L, TMEM186, PRSS33, ZNF500, NA NA NA NA NA NA NA NA NA LTS-033 RSL1D1, OR1F2P, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, ABCC1, SMIM22, MYH11, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RRN3, RBFOX1, NDE1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, SRL, PRSS22, NPIPA3, MMP25, C16orf90, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, C16orf45, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, NPIPA1, LITAF, KIAA0430, SEC14L5) 0.418829234453232 265 0.0874417337653362 1.18192135480243 9605 0.388121812740444 5 3 2 -6.91792922188673 LTS-033 NA NA NA NA LTS-033 chr16 16170201 20043330 3873130 * c(MIR3179-2, COQ7, IQCK, GPR139, ITPRIPL2, SMG1, ARL6IP1, NOMO2, PKD1P1, ABCC6, KNOP1, NOMO3, ABCC1, GDE1, GPRC5B, SYT17, C16orf62, RPS15A, XYLT1, ABCC6P1, CLEC19A, TMC5, TMC7, CCP110) 0.389144140145194 34 0.112570928324072 1.29349656145334 2014 0.377965555119073 5 3 2 -6.76000178571336 LTS-033 chr16 20043331 20321308 277978 * GPR139 0.375 1 NA 1.27527515028522 35 0.624199437531889 5 5 0 -5.76458167252871 LTS-033 chr16 20321309 20344721 23413 * c(GP2, UMOD) 0.16553719260452 9 0.222612892708396 1.35086802576999 112 0.857873873931737 6 6 0 -6.73309608711484 LTS-033 chr16 20344722 20376755 32034 * c(PDILT, UMOD) 0.375 1 NA 1.38630640600272 95 0.570304756940948 6 6 0 -5.76442219088641 LTS-033 chr16 20376756 28608392 8231637 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, ACSM2A, DCUN1D3, EARS2, CRYM, VWA3A, OTOA, GSG1L, C16orf82, NSMCE1, PDILT, GGA2, NPIPB3, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, SBK1, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, PLK1, NA NA NA NA NA NA NA NA NA LTS-033 ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, TMEM159, LYRM1, USP31, RBBP6, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, SULT1A2, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, KDM8, LOC81691, DCTN5, COG7, HS3ST4, HS3ST2) 0.371294341614839 111 0.122255163406398 1.25894430026091 6458 0.416599239074439 5 3 2 -6.77245658121597 LTS-033 NA NA NA NA LTS-033 chr16 28608393 28631384 22992 * SULT1A1 NA 0 NA 0.699935236266879 44 0.148228139687945 2 NA NA -5.77198462138464 LTS-033 chr16 28631385 29375986 744602 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, SULT1A1, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.355053954342718 14 0.16150800340799 1.28065700884597 898 0.381329886887032 6 4 2 -6.77103847072081 LTS-033 chr16 29375987 29564513 188527 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.375275437431259 39 0.462692394968486 0 NA NA -5.79043321930706 LTS-033 chr16 29564514 29624261 59748 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.869 1 NA NA NA NA NA LTS-033 chr16 29624262 31987905 2363644 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, MAZ, SMG1P2, NA NA NA NA NA NA NA NA NA LTS-033 CDIPT-AS1, YBX3P1, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MVP) 0.392612537635013 43 0.112194045635091 1.23494274290774 5759 0.292834715104133 5 3 2 -6.73979128866554 LTS-033 NA NA NA NA LTS-033 chr16 31987906 31993291 5386 * character(0) NA 0 NA 1.859 1 NA NA NA NA NA LTS-033 chr16 31993292 32890081 896790 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.471 1 NA 1.71581640071565 31 0.887909521448875 8 8 0 -5.7644121263422 LTS-033 chr16 32890082 32890574 493 * c(SLC6A10P, LOC390705) 0 1 NA 1.47537318707968 5 1.03164373695574 6 6 0 -5.76441077329214 LTS-033 chr16 32890575 33962180 1071606 * c(SLC6A10P, LOC390705, LINC00273) 0.30955081319339 73 0.0975821103729581 1.80210446881789 254 0.811614004329201 8 6 2 -6.73866936475368 LTS-033 chr16 33962181 34682251 720071 * c(LINC01566, UBE2MP1, LINC00273) 0.326495566653234 14 0.1032172838836 1.08213288601186 140 0.450851753231117 4 3 1 -6.77046519998479 LTS-033 chr16 34682252 34682380 129 * character(0) NA 0 NA 1.23700562650031 5 0.0315721396170738 5 NA NA -5.76441854816956 LTS-033 chr16 46508169 47347780 839612 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, VPS35, SHCBP1, ITFG1, NETO2, GPT2, MYLK3) 0.212 1 NA 0.783872455489779 909 0.178736335224954 2 2 0 -5.76458721536582 LTS-033 chr16 47347781 55813699 8465919 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, CNEP1R1, TOX3, BRD7, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, CHD9, ITFG1, LONP2, CAPNS2, ABCC11, NKD1, CBLN1, ABCC12, N4BP1) 0.2856834246406 45 0.0810502899128035 0.769524668356716 3742 0.2061865182509 2 2 0 -6.77773642184712 LTS-033 chr16 55813700 55844456 30757 * CES1 NA 0 NA 1.453 1 NA NA NA NA NA LTS-033 chr16 55844457 55860207 15751 * CES1 0.402840178785929 3 0.0765136153461156 1.22889655300778 42 0.373278680461228 5 3 2 -6.73309807274292 LTS-033 chr16 55860208 55862621 2414 * CES1 NA 0 NA 0.956 1 NA NA NA NA NA LTS-033 chr16 55862622 66514712 10652091 * c(CDH5, MIR3935, LINC00920, CDH8, CDH11, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, BEAN1, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ARL2BP, DKFZP434H168, AMFR, GNAO1, GOT2, LOC283856, LINC00922, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, POLR2C, SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, NA NA NA NA NA NA NA NA NA LTS-033 BBS2, CCL17, CCL22, CX3CL1, MT1IP, APOOP5, GINS3, NDRG4, SLC12A3, SNORA46, SNORA50A, TK2, USB1, SETD6, FAM192A, NLRC5, DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.292421154262439 120 0.0716787808144615 0.772000942767062 4830 0.210216843085142 2 2 0 -6.75939938788101 LTS-033 NA NA NA NA LTS-033 chr16 66514713 70884513 4369801 * c(CDH3, SNORD111B, VAC14-AS1, MIR1538, MIR1972-1, SMG1P7, LOC100506083, CKLF-CMTM1, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, NA NA NA NA NA NA NA NA NA LTS-033 HSF4, CLEC18A, C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, HYDIN, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.307826674933974 52 0.0889461171985932 0.746778483390235 8204 1.07797316360767 2 2 0 -6.74281376532839 LTS-033 NA NA NA NA LTS-033 chr16 70884514 70884524 11 * HYDIN 0.452 1 NA 1.408 1 NA NA NA NA NA LTS-033 chr16 70884525 70894087 9563 * HYDIN 0.264516594324196 4 0.135662264465842 1.01516469571907 22 0.414463268415671 3 3 0 -6.73971803540328 LTS-033 chr16 70894088 70894123 36 * HYDIN 0.443 1 NA 0.817 1 NA NA NA NA NA LTS-033 chr16 70894124 71165847 271724 * HYDIN 0.421940559957224 75 0.0743060387006829 0.951757971936663 480 0.420102557233699 4 2 2 -6.77422145225992 LTS-033 chr16 71165848 71167220 1373 * HYDIN 0.453402087484733 2 0.00424264068711929 0.862289493648192 31 0.428288589772168 0 0 0 -16.3198609294337 LTS-033 chr16 71167221 71218926 51706 * HYDIN 0.288 1 NA 0.818208356074579 31 0.246585142005889 2 2 0 -5.76549998062956 LTS-033 chr16 71218927 84157840 12938914 * c(LOC100129617, SYCE1L, SNORA70D, MIR3182, LINC01568, MIR4720, MIR4719, CDH13, CLEC3A, CHST4, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, CDYL2, TMEM170A, SLC38A8, CTRB1, ZFP1, AP1G1, ADAMTS18, DHODH, LDHD, MLKL, MON1B, PHLPP2, ATMIN, MLYCD, ADAT1, CHST5, GCSH, GLG1, HCCAT5, LOC283922, NUDT7, OSGIN1, HP, HPR, HSBP1, HSD17B2, ATXN1L, PKD1L3, KARS, MAF, CHST6, CTRB2, ZFHX3, CLEC18B, WWOX, PLCG2, NA NA NA NA NA NA NA NA NA LTS-033 BCO1, TERF2IP, NECAB2, HYDIN, TXNL4B, RFWD3, ZNF821, CMTR2, CENPN, CMC2, PSMD7, VAT1L, TAT, SNORD71, ZNF19, ZNF23, FA2H, CALB2, TMEM231, WDR59, CMIP, GAN, PMFBP1, DYNLRB2, HSDL1, ZNRF1, CNTNAP4, MBTPS1, MARVELD3, SDR42E1, BCAR1, DHX38, IST1) 0.280968710770062 170 0.0939297648828276 0.777559659620265 6428 0.268047861298547 2 2 0 -6.75883554403291 LTS-033 NA NA NA NA LTS-033 chr16 84157841 90161231 6003391 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, NA NA NA NA NA NA NA NA NA LTS-033 LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.299332410339817 339 0.0771478646599601 0.742674209889153 6725 0.370470209905378 2 2 0 -6.7995868054888 LTS-033 NA NA NA NA LTS-033 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.396 1 NA NA NA NA NA LTS-033 chr17 6004 11843 5840 * DOC2B 0.394 1 NA 1.22132255790164 9 0.679410058637476 5 5 0 -5.76441422298597 LTS-033 chr17 11844 4836381 4824538 * c(C17orf107, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, LOC100506388, P2RX5-TAX1BP3, LOC101559451, MYBBP1A, PRPF8, CHRNE, SMYD4, OVCA2, SLC43A2, CYB5D2, GGT6, SPNS2, WDR81, CRK, RTN4RL1, CTNS, TRPV3, DPH1, SPNS3, RAP1GAP2, ZZEF1, CLUH, SMG6, SHPK, ALOX15, OR1A2, PELP1, GP1BA, LOC284009, VMO1, TUSC5, ABR, TIMM22, TAX1BP3, HIC1, SMTNL2, RFLNB, ITGAE, GLTPD2, OR3A4P, C17orf97, MED11, MIR132, MIR212, MIR22, NA NA NA NA NA NA NA NA NA LTS-033 ARRB2, MNT, ASPA, MYO1C, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, GLOD4, ANKFY1, SERPINF1, INPP5K, PITPNA, PLD2, SERPINF2, MRM3, VPS53, NCBP3, TSR1, PSMB6, CXCL16, RPA1, SRR, NXN, OR1D4, SNORD91A, SNORD91B, BHLHA9, TLCD2, UBE2G1, TRPV1, YWHAE, METTL16, FAM57A, EMC6, RILP, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, ZMYND15, CAMKK1, DOC2B, SPATA22, MIR22HG, SCARF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TM4SF5, RPH3AL, SGSM2) 0.436206049467786 185 0.0869758644614982 1.02811649382366 6943 0.428549369890934 4 2 2 -6.85859677504856 LTS-033 NA NA NA NA LTS-033 chr17 4836382 4840482 4101 * c(GP1BA, SLC25A11) 0 1 NA 1.05313010519861 31 0.266452799992149 4 4 0 -5.76445976148869 LTS-033 chr17 4840483 5346482 506000 * c(LOC100130950, KIF1C, ZFP3, ENO3, CAMTA2, RNF167, INCA1, SCIMP, NUP88, PFN1, SLC52A1, DHX33, C1QBP, ZNF232, SLC25A11, RPAIN, ZNF594, USP6, RABEP1, SPAG7) 0.299098346801277 12 0.202138041641814 0.974783662418434 1249 0.260691214575737 3 3 0 -6.77442035978893 LTS-033 chr17 5346483 6327389 980907 * c(NLRP1, WSCD1, AIPL1, LOC339166, DERL2, DHX33, LOC728392, MIS12) 0.478 1 NA 1.0767606359114 430 0.268206533120103 4 4 0 -5.76641462043303 LTS-033 chr17 6327390 8412066 2084677 * c(LOC100128288, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, CLEC10A, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, KRBA2, CLDN7, DNAH2, ODF4, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, FGF11, ARHGEF15, KDM6B, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15B, TMEM256, BCL6B, SENP3, SNORA67, NA NA NA NA NA NA NA NA NA LTS-033 LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TMEM95, ACADVL, SPEM1, SLC25A35, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, MYH10, ATP1B2, MED31, YBX2, PER1, PFAS, POLR2A, FAM64A, XAF1, BORCS6, WRAP53, PLSCR3, MIR497, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, TP53, PHF23, CTC1, NDEL1, PITPNM3, TEKT1, TMEM107, NAA38, NEURL4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, CD68, ACAP1, KIAA0753) 0.44321991201367 153 0.0843901456357705 1.02869222645134 6680 0.233930187792295 4 2 2 -6.92488755546593 LTS-033 NA NA NA NA LTS-033 chr17 8412067 8413098 1032 * MYH10 NA 0 NA 1.522 1 NA NA NA NA NA LTS-033 chr17 8413099 12917834 4504736 * c(MIR744, LINC00675, MAGOH2P, TMEM220-AS1, USP43, CFAP52, CCDC42, PIK3R6, MFSD6L, DNAH9, DHRS7C, PIK3R5, LINC00670, SPDYE4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, GAS7, MYH13, GLP2R, MYOCD, NTN1, STX8, ARHGAP44) 0.443710628908131 83 0.084906510270624 1.09730877995839 3525 0.289282327028604 4 2 2 -6.84205936346336 LTS-033 chr17 12917835 17124815 4206981 * c(FAM106CP, MIR1288, TVP23C-CDRT4, MIR4731, COX10-AS1, TRIM16, LRRC75A-AS1, ZSWIM7, COX10, ADORA2B, CDRT15, USP32P1, TVP23C, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, CDRT4, TBC1D26, CDRT1, LRRC75A, KRT16P2, MEIS3P1, TRPV2, PMP22, TTC19, ZNF286A, ZNF287, ZNF624, ELAC2, CDRT15P2, TEKT3, SNORD49B, SNORD65, UBB, MGC12916, CDRT7, CDRT15P1, PIGL, NCOR1, CCDC144A, HS3ST3B1, HS3ST3A1) 0.427474309781455 56 0.0845901482550905 1.01904007356716 2624 0.950743841569201 4 2 2 -6.78110071366373 LTS-033 chr17 17124816 17128131 3316 * c(FLCN, PLD6) 0 1 NA 1.02303162438382 19 0.35791637920459 4 4 0 -5.76447950315945 LTS-033 chr17 17128132 17767444 639313 * c(PEMT, RAI1, SMCR5, NA, TOM1L2, FLCN, PLD6, RASD1, MED9, NT5M, SREBF1, MIR33B, COPS3) 0.338079678564062 11 0.210831427707282 1.03774162141301 713 0.253304775851946 4 3 1 -6.75222149675321 LTS-033 chr17 17767445 17921733 154289 * c(TOM1L2, DRC3, ATPAF2) 0.462 1 NA 0.986772594652241 135 0.188930799174532 3 3 0 -5.77120707342973 LTS-033 chr17 17921734 19239110 1317377 * c(EPN2-AS1, EPN2-IT1, FBXW10, GRAP, MIEF2, SLC5A10, SMCR8, TRIM16L, DRG2, USP32P2, EPN2, FOXO3B, FLII, TBC1D28, CCDC144B, KRT17P5, LLGL1, GRAPL, TVP23B, MYO15A, ALKBH5, PRPSAP2, FAM83G, EVPLL, SHMT1, LGALS9C, TOP3A, KRT16P1, ZNF286B, GID4, FAM106A, ATPAF2) 0.449002523235892 54 0.0740371433969191 1.02980635329928 2376 0.275318149138238 4 2 2 -6.95568701303781 LTS-033 chr17 19239111 19239209 99 * EPN2 NA 0 NA 1.198 1 NA NA NA NA NA LTS-033 chr17 19239210 19290368 51159 * c(MIR1180, EPN2, B9D1, MFAP4, MAPK7) 0.399768774689174 7 0.0347795780253161 1.37557612210156 199 0.418383526795248 5 3 2 -6.73744971949777 LTS-033 chr17 19290369 19290446 78 * MFAP4 0.337 1 NA 0.242 1 NA NA NA NA NA LTS-033 chr17 19290447 21202223 1911777 * c(LOC100287072, AKAP10, SLC47A2, ALDH3A1, ALDH3A2, USP22, CDRT15L2, NATD1, DHRS7B, LGALS9B, CCDC144NL, CCDC144CP, MFAP4, SLC47A1, MAP2K3, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.420533107878766 39 0.109860167532443 1.05568898429317 1524 0.399659059380585 4 2 2 -6.75079246990619 LTS-033 chr17 21202224 21202237 14 * MAP2K3 0.437 1 NA 1.743 1 NA NA NA NA NA LTS-033 chr17 21202238 21218498 16261 * MAP2K3 0.416982224136652 40 0.0577783064160563 1.4240075867904 118 0.383065155422111 6 3 3 -6.75003857701192 LTS-033 chr17 21218499 21318555 100057 * c(KCNJ12, MAP2K3) 0.292 1 NA 2.02744205632912 4 0.775156973350129 10 10 0 -5.76441048644198 LTS-033 chr17 21318556 21320350 1795 * KCNJ12 0.300482849386393 39 0.0722928423893316 1.65885538202199 84 0.741393253057959 12 9 3 -6.73336389147385 LTS-033 chr17 21320351 21320356 6 * KCNJ12 NA 0 NA 1.076 1 NA NA NA NA NA LTS-033 chr17 21320357 22066835 746479 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.366560707516127 15 0.117256048681426 1.14712943995331 212 0.718499902131117 4 3 1 -6.7438931521638 LTS-033 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.969 1 NA NA NA NA NA LTS-033 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.499 1 NA 1.08025909813369 17 0.17798525219804 4 4 0 -5.76443799682299 LTS-033 chr17 25630389 29284978 3654590 * c(MIR3184, SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, TBC1D29, WSB1, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, EFCAB5, TMIGD1, LGALS9, MYO18A, MIR144, TBC1D3P5, SUZ12P1, NOS2, MIR423, PIPOX, CRLF3, NLK, FAM222B, NA NA NA NA NA NA NA NA NA LTS-033 ADAP2, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, BLMH, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, TNFAIP1, VTN, TEFM, ATAD5, RAB34, NSRP1, FOXN1, CORO6, SSH2, KSR1, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.398919789938246 46 0.167248046860775 1.04155067545549 5441 0.26487701883927 4 2 2 -6.80833843050021 LTS-033 NA NA NA NA LTS-033 chr17 29284979 29285082 104 * ADAP2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-033 chr17 29285083 34417325 5132243 * c(MIR365B, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, RFFL, TMEM132E, SPACA3, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, SLFN14, CCL15-CCL14, LIG3, ASIC2, C17orf102, MIR193A, MYO1D, NF1, OMG, ARGFXP2, DPRXP4, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, RAD51D, CCL1, CCL2, CCL3, NA NA NA NA NA NA NA NA NA LTS-033 CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, SH3GL1P1, SNORD7, MIR632, ZNF207, MMP28, TAF15, RNF135, RAB11FIP4, CDK5R1, ZNF830, SLFN11, RASL10B) 0.389042987834138 101 0.116413618168363 0.874781712932358 4710 0.298986511459141 3 2 1 -6.8948393940908 LTS-033 NA NA NA NA LTS-033 chr17 34417326 34417372 47 * CCL3 NA 0 NA 0.719 1 NA NA NA NA NA LTS-033 chr17 34417373 34866797 449425 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3, CCL3L1, CCL4, NA, TBC1D3H, MYO19, ZNHIT3) 0.447729316794974 5 0.0475836106238272 0.775383427113161 196 0.32959916366179 2 1 1 -7.13882175554858 LTS-033 chr17 34866798 34867199 402 * MYO19 NA 0 NA 1.094 1 NA NA NA NA NA LTS-033 chr17 34867200 35478491 611292 * c(MIR2909, AATF, PIGW, ACACA, LHX1, DHRS11, GGNBP2, MRM1, MYO19) 0.32 1 NA 1.01283689263302 514 0.255612545484135 4 4 0 -5.79738721373882 LTS-033 chr17 35478492 35479456 965 * ACACA NA 0 NA 0.735 1 NA NA NA NA NA LTS-033 chr17 35479457 44172146 8692690 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, DDX52, DUSP14, SYNRG, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, NA NA NA NA NA NA NA NA NA LTS-033 LSM12, CCDC43, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, C17orf78, YWHAEP7, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ACACA, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, TADA2A, HNF1B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.396281088196683 314 0.097651821218332 0.887368399794483 16114 0.250972455514345 3 2 1 -6.97359978057535 LTS-033 NA NA NA NA LTS-033 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.505 1 NA NA NA NA NA LTS-033 chr17 44248158 44364336 116179 * character(0) NA 0 NA 0.501783230561489 69 0.143581937599317 0 NA NA -5.78004952659619 LTS-033 chr17 44364337 44408491 44155 * character(0) NA 0 NA 1.404 1 NA NA NA NA NA LTS-033 chr17 44408492 48154817 3746326 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, NA NA NA NA NA NA NA NA NA LTS-033 PHB, PNPO, UBE2Z, MRPL45P2, SP2, FLJ45513, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.384751477316931 104 0.114491524108147 0.868734671377936 4369 0.362673666836973 3 2 1 -6.83441510781129 LTS-033 NA NA NA NA LTS-033 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.081 1 NA NA NA NA NA LTS-033 chr17 48155444 56635258 8479815 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, CHAD, HSF5, OR4D2, MSI2, WFIKKN2, COL1A1, COX11, DYNLL2, EME1, ANKFN1, TMEM92, SAMD14, MMD, MTVR2, STXBP4, CACNA1G-AS1, OR4D1, C17orf47, HLF, C17orf67, ITGA3, HILS1, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPL27, PDK2, MRPS23, LUC7L3, SEPT4, MBTD1, RNF43, MKS1, LINC00483, EPN3, TMEM100, RSAD1, LRRC59, MSX2P1, TEX14, NA NA NA NA NA NA NA NA NA LTS-033 CA10, PCTP, SCPEP1, XYLT2, SRSF1, SGCA, SPATA20, NME1-NME2, SUPT4H1, TRIM25, VEZF1, ACSF2, COIL, AKAP1, EPX, MYCBPAP, KIF2B, PPP1R9B, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, NOG, TSPOAP1) 0.396231787775127 66 0.0842077088421139 0.917438266949138 5250 0.23053841335638 3 2 1 -6.77795888473368 LTS-033 NA NA NA NA LTS-033 chr17 56635259 67149731 10514473 * c(SNORA38B, LINC00674, MIR4729, MIR4737, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, NOL11, TANC2, PITPNC1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, NA NA NA NA NA NA NA NA NA LTS-033 KPNA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, PTRH2, PECAM1, FAM20A, BCAS3, WIPI1, SMG8, PRKAR1A, PRR11, PRKCA, TEX2, TEX14, CCDC47, PSMC5, PSMD12, INTS2, RAD51C, RPS6KB1, SCN4A, HEATR6, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, MIR454, CACNG1, DHX40, LIMD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 KCNH6, VMP1, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, SLC16A6, STRADA, PRR29, TBX4, CD79B, MRC2, HELZ, MED13) 0.402602890495452 81 0.103989676303842 0.870057652011233 7689 0.238081433143501 3 2 1 -7.30111329087096 LTS-033 NA NA NA NA LTS-033 chr17 67149732 67149939 208 * ABCA10 NA 0 NA 0.985 1 NA NA NA NA NA LTS-033 chr17 67149940 72346790 5196851 * c(LINC00673, ABCA10, KIF19, SLC39A11, ABCA5, CDC42EP4, LINC00469, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, LOC400620, SDK2, C17orf80, MAP2K6, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, COG1, TTYH2) 0.392871369852273 31 0.156953599060565 0.950102374995325 1603 0.288572148896335 3 2 1 -6.73972368156333 LTS-033 chr17 72346791 80363278 8016488 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-033 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 TMEM94, EIF4A3) 0.404449065566518 284 0.0848421977226427 0.8805866424921 13091 0.229330039455251 3 2 1 -7.08116135076401 LTS-033 NA NA NA NA LTS-033 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.65482300463731 39 0.706913820629906 8 NA NA -5.76445028550079 LTS-033 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.77 1 NA NA NA NA NA LTS-033 chr17 80391535 81009622 618088 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.355639702666962 26 0.118058974832333 0.87638329884242 864 0.29448873039366 3 2 1 -6.81471534236853 LTS-033 chr17 81009623 81083625 74003 * c(B3GNTL1, METRNL) NA 0 NA 0.818581811754469 33 0.187676194991977 2 NA NA -5.76715552911908 LTS-033 chr18 116845 121139 4295 * ROCK1P1 0.457 1 NA 0.981658446060205 25 0.277220730345574 3 3 0 -5.76448115388083 LTS-033 chr18 121140 5133025 5011886 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.440436720750209 54 0.0868458396253821 1.01540360599389 1963 0.288837624287003 4 2 2 -7.01221975903966 LTS-033 chr18 5133026 8609854 3476829 * c(LINC01387, LOC100192426, MIR4317, MIR3976, LINC00526, RAB12, EPB41L3, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.434993234606449 32 0.0871550342780037 1.15309117346677 1308 0.342846061334633 4 2 2 -6.84238368741229 LTS-033 chr18 8609855 12308793 3698939 * c(RALBP1, RAB31, CIDEA, APCDD1, RAB12, ANKRD12, MTCL1, GNAL, ANKRD62, IMPA2, NDUFV2, C18orf61, TWSG1, CHMP1B, PIEZO2, MPPE1, TXNDC2, TUBB6, NAPG, VAPA, PPP4R1) 0.441120142775957 38 0.0820773496337561 1.07348066797024 1968 0.278110332510006 4 2 2 -6.8435642638526 LTS-033 chr18 12308794 12348285 39492 * c(AFG3L2, TUBB6) 0.422 1 NA 1.05619547584392 61 0.237896872316396 4 4 0 -5.76492117231083 LTS-033 chr18 12348286 13042261 693976 * c(PRELID3A, AFG3L2, CEP192, SPIRE1, PSMG2, PTPN2, CEP76, SEH1L) 0.314544504008348 9 0.221307478409565 1.04359193686179 595 0.325985166543311 4 3 1 -6.75904056321017 LTS-033 chr18 13042262 13056682 14421 * CEP192 0.493 1 NA 1.0713642156541 53 0.122517917293983 4 4 0 -5.76465660995564 LTS-033 chr18 13056683 14752957 1696275 * c(LDLRAD4-AS1, MIR4526, MIR5190, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, CEP192, LDLRAD4, RNMT) 0.471320142610644 12 0.021685772461979 1.01883164069326 534 0.22692265152826 4 2 2 -9.86152490311764 LTS-033 chr18 14752958 14757924 4967 * ANKRD30B 0 1 NA 1.19439011717719 11 1.27408979988925 5 5 0 -5.76441393593627 LTS-033 chr18 14757925 15004525 246601 * c(MIR3156-2, ANKRD30B) 0.381971922277416 16 0.0747438960718532 1.14205141292198 132 0.463065562014248 6 4 2 -6.76523002826452 LTS-033 chr18 15004526 15006193 1668 * character(0) NA 0 NA 1.48999429094249 19 0.754186758480064 7 NA NA -5.76441410461784 LTS-033 chr18 18529727 18529837 111 * ROCK1 0.47 1 NA 1.11508733377648 3 0.689133030215018 4 4 0 -5.7644101865288 LTS-033 chr18 18529838 23748076 5218239 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.426838542308971 32 0.139474763586175 1.03979453604422 2767 0.256799505214979 4 2 2 -6.86395964999376 LTS-033 chr18 23748077 23748123 47 * PSMA8 NA 0 NA 0.001 1 NA NA NA NA NA LTS-033 chr18 23748124 23750603 2480 * PSMA8 NA 0 NA 0.105577280431313 45 0.112212046743402 0 NA NA -6.01603074683406 LTS-033 chr18 23750604 23758789 8186 * PSMA8 NA 0 NA 0.767 1 NA NA NA NA NA LTS-033 chr18 23758790 28742568 4983779 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC1, DSC2, DSC3, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.410843623036611 19 0.177913836823709 1.18023597190691 826 0.289096383849303 5 3 2 -6.85020210422743 LTS-033 chr18 28742569 28742678 110 * DSC1 NA 0 NA 1.036 1 NA NA NA NA NA LTS-033 chr18 28742679 32721113 3978435 * c(DSG2-AS1, MAPRE2, SLC25A52, DSG4, DSC1, DSG1, DSG2, DSG3, DTNA, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, ASXL3, NOL4, B4GALT6) 0.43213882410504 32 0.115766659081269 1.09119347427688 2048 0.327597959098171 4 2 2 -6.76077155253858 LTS-033 chr18 32721114 32722868 1755 * MAPRE2 0.055 1 NA 1.19460258028051 39 0.264965625555554 5 5 0 -5.7644409360748 LTS-033 chr18 32722869 33849043 1126175 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, ZNF396, SLC39A6, GALNT1, MIR187, MOCOS, RPRD1A, ELP2, ZNF24, C18orf21, ZNF397) 0.35426031091322 8 0.203876319300277 1.07303163197049 1092 0.958084772125285 4 3 1 -6.7333558920055 LTS-033 chr18 33849044 33849868 825 * character(0) 0.468 1 NA 1.14827902158509 19 0.208282351656822 4 4 0 -5.76443711054346 LTS-033 chr18 33849869 43247001 9397133 * c(MIR4319, MIR4318, MIR5583-2, MIR5583-1, TPGS2, SETBP1, LINC00907, PIK3C3, CELF4, KIAA1328, RIT2, KC6, MIR924HG, SYT4, FHOD3, SLC14A2) 0.469650471510383 14 0.0373831512850375 1.09648335874915 1093 0.25209624577133 4 2 2 -8.06258481661203 LTS-033 chr18 43247002 43330160 83159 * c(SLC14A1, SLC14A2) 0 1 NA 1.12307554621184 109 0.457459568760594 4 4 0 -5.76457704283052 LTS-033 chr18 43330161 44585955 1255795 * c(TCEB3CL2, HAUS1, LOXHD1, C18orf25, TCEB3C, SIGLEC15, ST8SIA5, RNF165, ATP5A1, TCEB3B, EPG5, SLC14A1, KATNAL2, PSTPIP2, PIAS2) 0.336465342422254 9 0.194755901351181 1.0534580079819 1262 0.292876104388778 4 3 1 -6.7493301635505 LTS-033 chr18 44585956 44595809 9854 * KATNAL2 0.489 1 NA 1.20545307099781 25 0.447310675034701 5 5 0 -5.76444904149098 LTS-033 chr18 44595810 63548826 18953017 * c(SNORD58C, LINC01630, MIR1539, MIR4320, CDH7, LINC01539, LOC100505549, RPL17-C18orf32, MIR4529, MIR3591, MIR4743, MIR4744, LINC-ROR, LINC01544, ACAA2, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, DCC, ZBTB7C, SKA1, CFAP53, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, SNORD58B, SNORD58A, CDH20, DYNAP, BOD1L2, HMSD, LOC284294, GRP, RAX, CXXC1, CPLX4, OACYLP, LMAN1, LINC01538, MIR122, SMAD2, NA NA NA NA NA NA NA NA NA LTS-033 SMAD4, SMAD7, MBD1, MC4R, ME2, MYO5B, NARS, C18orf32, SERPINB2, ST8SIA3, IER3IP1, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, DYM, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, RAB27B, BCL2, RPL17, SERPINB3, SERPINB4, SKOR2, SCARNA17, SNORA37, TCF4, CCDC68, KATNAL2, MRO, HDHD2, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, TXNL1, LIPG, ONECUT2, VPS4B, CTIF) 0.446413398584436 179 0.077257686006494 1.05678443240491 7594 0.545198940805916 4 2 2 -6.92831480327916 LTS-033 NA NA NA NA LTS-033 chr18 63548827 65176856 1628030 * c(MIR5011, CDH19, DSEL) 0.43716340849854 3 0.0243310501211928 1.27568753530564 279 0.432711030628931 6 3 3 -7.57486754373343 LTS-033 chr18 65176857 70204066 5027210 * c(LINC01541, CD226, CBLN2, DOK6, RTTN, TMX3, LOC643542, CCDC102B, DSEL, SOCS6) 0.463370645428016 13 0.0180916470313703 1.04699867182527 797 0.269997895237344 4 2 2 -10.0308127464071 LTS-033 chr18 70204067 70204690 624 * CBLN2 0 1 NA 1.12483897585969 13 0.869199867841919 4 4 0 -5.76441052331692 LTS-033 chr18 70204691 72188252 1983562 * c(LOC100505817, FAM69C, CBLN2, CYB5A, FBXO15, TIMM21, LOC400655, CNDP2, C18orf63, NETO1) 0.37263964576677 9 0.181865411163799 1.10099145285612 484 0.327372818538719 4 3 1 -6.74102785065419 LTS-033 chr18 72188253 72201918 13666 * c(CNDP2, CNDP1) 0.48 1 NA 1.09439088689124 10 0.272998982497086 4 4 0 -5.76441017240095 LTS-033 chr18 72201919 77809003 5607085 * c(LOC100131655, RBFADN, TSHZ1, TXNL4A, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, ZNF236, RBFA, PQLC1, CNDP1, CTDP1, ZNF516) 0.440957399045589 48 0.0763193847781008 1.04238704258799 1891 0.25851044490382 4 2 2 -6.96215087917756 LTS-033 chr18 77809004 78005362 196359 * c(PARD6G-AS1, RBFADN, ADNP2, RBFA, PARD6G) NA 0 NA 1.0695961302102 243 0.236252078122577 4 NA NA -5.7654625566113 LTS-033 chr19 107416 107456 41 * character(0) 0.301 1 NA 3.585 1 NA NA NA NA NA LTS-033 chr19 107457 6478925 6371469 * c(LOC100128568, C19orf71, DPP9-AS1, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, MIR3940, MIR4747, MIR4746, MIR4745, EBI3, PLIN3, FSTL3, APC2, ABCA7, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, NA NA NA NA NA NA NA NA NA LTS-033 ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, SBNO2, KDM4B, ZFR2, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, HSD11B1L, ONECUT3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MEX3D, LINC01002, PRSS57, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, PALM, THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, PSPN, PRTN3, AZU1, NCLN, SPPL2B, DUS3L, SHD, PTBP1, WDR18, REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, SAFB, SGTA, LINGO3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ARRDC5, SH3GL1, STK11, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, SLC25A23, FSD1, TLE6, PLPPR3, DENND1C, ZNF556, UBXN6, OR4F17, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, CRB3, REEP6, LONP1, APBA3, SAFB2, CDC34) 0.297439911977434 307 0.0821578666590697 0.742393235355081 10988 0.261578950898601 2 2 0 -6.87542264809716 LTS-033 NA NA NA NA LTS-033 chr19 6478926 6667056 188131 * c(TUBB4A, DENND1C, TNFSF14, TNFSF9, CD70) 0 1 NA 0.730219957272594 103 0.472625780610835 2 2 0 -5.76671502702093 LTS-033 chr19 6667057 6990702 323646 * c(SH2D3A, ADGRE1, ADGRE4P, GPR108, C3, VAV1, TNFSF14, TRIP10) 0.205359956693873 10 0.126298763959818 0.741549412345349 732 0.233083576135422 3 3 0 -6.99877064230213 LTS-033 chr19 6990703 6994972 4270 * ADGRE4P 0.295 1 NA 0.996943629546845 7 0.411650626253912 3 3 0 -5.76446726247632 LTS-033 chr19 6994973 10077312 3082340 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, ZNF559-ZNF177, MIR4999, CLEC4M, TIMM44, ZNF266, PNPLA6, EVI5L, OR7D4, OR7G1, OR1M1, MBD3L2, TRAPPC5, PCP2, ZNF358, ZNF560, ZNF558, ZNF846, OR7D2, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, MBD3L5, CD209, CLEC4G, INSR, C19orf45, ZNF699, LYPLA2P2, OR7G2, OR7G3, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, FLJ25758, COL5A3, ANGPTL4, MARCH2, NA NA NA NA NA NA NA NA NA LTS-033 CD320, PIN1, ZNF562, FBXL12, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, ZNF317, UBL5, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF557, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, ZNF559, MBD3L1, RAB11B, PEX11G, ZNF561, OLFM2, MUC16) 0.285208797051176 174 0.0816887844473447 0.76706843074408 5145 0.293648960293299 2 2 0 -6.75865038858936 LTS-033 NA NA NA NA LTS-033 chr19 10077313 10092779 15467 * COL5A3 0.295506963951937 7 0.149288790125524 1.12249216279085 123 0.478485989133031 2 2 0 -6.73878815133586 LTS-033 chr19 10092780 10096650 3871 * COL5A3 0.442 1 NA 1.02973005155167 7 0.157693796115552 4 4 0 -5.76474981149523 LTS-033 chr19 10096651 12186272 2089622 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, SPC24, ZNF433, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF763, ZNF844, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, C3P1, LDLR, ZNF833P, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, ECSIT, PDE4A, S1PR5, ACP5, C19orf66, NA NA NA NA NA NA NA NA NA LTS-033 ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, ZNF878, ZNF69, YIPF2, QTRT1, ANGPTL6, ELOF1, ATG4D, EIF3G, C19orf52, ZNF700, ZNF439, S1PR2, RAB3D, KEAP1) 0.429954244927606 112 0.126534543383381 1.07620539491026 4444 0.319188642667389 4 2 2 -6.75551265733577 LTS-033 NA NA NA NA LTS-033 chr19 12186273 12188912 2640 * ZNF844 0 1 NA 0.972831598776259 50 0.135114797751499 3 3 0 -5.76452883290339 LTS-033 chr19 12188913 12247731 58819 * c(ZNF625-ZNF20, ZNF788, ZNF20) 0.248600315990087 9 0.24579208693528 1.05775007540839 204 0.536608916922607 3 3 0 -6.73484685171112 LTS-033 chr19 12247732 12253327 5596 * c(ZNF625-ZNF20, ZNF20, ZNF625) 0.488 1 NA 1.03373241554109 15 0.118842913525536 4 4 0 -5.76516708174508 LTS-033 chr19 12253328 16614124 4360797 * c(MIR1470, LOC100507373, ZNF625-ZNF20, DDX39A, ZNF443, AKAP8, KLF2, RNASEH2A, KLF1, GIPC1, ILVBL, CYP4F8, NACC1, MISP3, PGLYRP2, CIB3, RLN3, CALR3, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, ZNF563, LINC00905, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, DAND5, FARSA, ADGRL1, MAST1, BRD4, CASP14, SYCE2, FAM32A, OR7A17, GCDH, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, SNORD41, AKAP8L, OR10H5, LOC284454, NA NA NA NA NA NA NA NA NA LTS-033 C19orf53, HOOK2, TNPO2, ADGRE2, DNAJB1, NANOS3, PALM3, JUNB, CLEC17A, CYP4F24P, OR7A10, CYP4F3, LYL1, MIR181C, MAN2B1, RAB8A, ASNA1, NDUFB7, NFIX, NOTCH3, WDR83OS, ZNF44, BEST2, CC2D1A, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, ZNF490, CYP4F11, EPS15L1, WIZ, RAD23A, RFX1, C19orf67, RASAL3, SLC1A6, ZSWIM4, UCA1, CYP4F12, MIR639, PRDX2, TPM4, ZNF136, CACNA1A, C19orf43, C19orf57, EPHX3, PODNL1, ZNF442, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CALR, CCDC130, RTBDN, C19orf44, MRI1, FBXW9, WDR83, ZNF333, ADGRE3, HSH2D, CYP4F2, SYDE1, STX10, AP1M1, SAMD1, DCAF15, GADD45GIP1, ZNF799, ZNF625, MED26, IL27RA, TECR, IER2, ADGRE5) 0.446857604136863 160 0.0787238935463328 1.07832134153656 6706 0.308350346153301 4 2 2 -6.88678581765745 LTS-033 NA NA NA NA LTS-033 chr19 16614125 16663190 49066 * c(CHERP, SLC35E1, C19orf44, MED26) 0 1 NA 1.03394388858234 189 0.292837634474053 4 4 0 -5.76549544107935 LTS-033 chr19 16663191 16965044 301854 * c(SIN3B, NWD1, TMEM38A, SMIM7, SLC35E1, MED26) 0.320438475823224 9 0.239118171622317 1.07750703586145 451 0.484626708684262 4 3 1 -6.74381881488443 LTS-033 chr19 16965045 17000131 35087 * c(SIN3B, F2RL3) 0.438 1 NA 1.12819932044504 83 0.224997707893115 4 4 0 -5.76481000812291 LTS-033 chr19 17000132 23869823 6869692 * c(ZNF730, ZNF737, TMEM221, MEF2B, ZNF729, MIR1270, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, ZNF257, CCDC124, NXNL1, LRRC25, NR2C2AP, ANKLE1, COMP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF676, ZNF100, SSBP4, ZNF431, ZNF675, ZNF626, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, CRTC1, MAU2, FKBP8, TMEM59L, PGLS, LSM4, GDF1, SNORA68, ARRDC2, CPAMD8, SLC25A42, LINC00663, ZNF493, BABAM1, ZNF429, IL12RB1, NA NA NA NA NA NA NA NA NA LTS-033 INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, ZNF728, LINC00664, HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, ZNF724, MYO9B, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, USE1, ZNF253, ATP13A1, ZNF492, ANO8, SUGP1, RAB3A, UPF1, RPL18A, LOC641367, MRPL34, SLC5A5, ZNF826P, BST2, LOC729966, BORCS8, UBA52, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ZNF208, DDA1, KXD1, ABHD8, OCEL1, COLGALT1, ZNF430, PBX4, KIAA1683, ELL, ZNF93, PLVAP, USHBP1, TSSK6, GTPBP3, MPV17L2, RFXANK, F2RL3, ZNF486, ZNF682, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, HOMER3, GDF15) 0.441248533589108 142 0.0888251479166084 1.09258009660906 7098 0.330774771937007 4 2 2 -6.81974526693956 LTS-033 NA NA NA NA LTS-033 chr19 23869824 24345121 475298 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) NA 0 NA 1.16532142177522 251 0.343719095537985 4 NA NA -5.77409242455402 LTS-033 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.488 1 NA 1.37834021302587 5 0.0477619095095662 6 6 0 -5.90073494337227 LTS-033 chr19 29567135 31766304 2199170 * c(POP4, LOC284395, VSTM2B, TSHZ3, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.478497119511151 10 0.0325489375146614 1.27891675101051 419 0.25918093931437 6 3 3 -8.92142855503064 LTS-033 chr19 31766305 31766374 70 * TSHZ3 NA 0 NA 1.776 1 NA NA NA NA NA LTS-033 chr19 31766375 33953800 2187426 * c(THEG5, CEBPA, CEBPG, SLC7A9, WDR88, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CEBPA-AS1, ANKRD27, CEP89, RHPN2, PDCD5, FAAP24, TDRD12) 0.409803768446322 36 0.0713371772440069 1.59516142994747 1270 0.416283237189268 7 4 3 -6.73878185757467 LTS-033 chr19 33953801 33991872 38072 * PEPD 0 1 NA 1.80505036909258 37 0.855594736340081 9 9 0 -5.76445524061911 LTS-033 chr19 33991873 34929607 937735 * c(UBA2, LSM14A, GPI, PEPD, CHST8, KCTD15, PDCD2L, KIAA0355) 0 1 NA 1.56163452526232 444 0.471492691306647 7 7 0 -5.76441091159647 LTS-033 chr19 34929608 34929613 6 * UBA2 NA 0 NA 1.386 1 NA NA NA NA NA LTS-033 chr19 34929614 35851141 921528 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, MIR5196, WTIP, ZNF792, ZNF599, FAM187B, LGI4, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, HAMP, SCN1B, SCGB1B2P, USF2, ZNF30, CD22) 0.288321538702534 25 0.0477874809268425 1.2613916119167 1297 0.29551788725435 6 5 1 -6.83551250799276 LTS-033 chr19 35851142 35863371 12230 * FFAR3 0.426 1 NA 0.379713230553353 39 0.624285123144671 0 0 0 -5.76524545325451 LTS-033 chr19 35863372 35863470 99 * character(0) NA 0 NA 0.948 1 NA NA NA NA NA LTS-033 chr19 35863471 37488499 1625029 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF565, PROSER3, ZNF567, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, NA NA NA NA NA NA NA NA NA LTS-033 TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, DMKN, KMT2B) 0.286462025981556 104 0.0590952036282099 1.26293961232794 3392 0.371586030590879 6 5 1 -6.8261844627025 LTS-033 NA NA NA NA LTS-033 chr19 37488500 37488705 206 * ZNF568 NA 0 NA 1.33262968705887 7 0.107433478864609 6 NA NA -5.76444094823856 LTS-033 chr19 37488706 37579887 91182 * c(ZNF420, ZNF568) NA 0 NA 0.784 1 NA NA NA NA NA LTS-033 chr19 37579888 37681014 101127 * c(ZNF420, ZNF585A, ZNF585B) 0.384 1 NA 0.967760378816524 197 0.203498507224903 3 3 0 -5.7658884180555 LTS-033 chr19 37681015 50412217 12731203 * c(SNAR-G1, SNAR-A1, SNAR-A12, LOC100129935, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, ZNF571-AS1, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4530, MIR4749, MIR4750, MIR4531, LOC100631378, MIR5088, RNU6-66P, NA NA NA NA NA NA NA NA NA LTS-033 LIPE-AS1, LOC101059948, IFNL4, PAK4, TOMM40, CEACAM5, RABAC1, SPINT2, DLL3, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, CEACAM4, KDELR1, HNRNPUL1, CLASRP, KPTN, MAP4K1, EGLN2, PNKP, PTH2, CGB1, CGB2, LMTK3, FBXO17, RASGRP4, CKM, ZNF526, AP2S1, CLC, CLPTM1, CEACAM20, CPT1C, ALDH16A1, NTN5, ZNF573, EID2B, IRGQ, ZNF428, RINL, FBXO27, C19orf47, CRX, PPM1N, KLC3, IGSF23, LYPD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 HIPK4, CCDC155, DACT3, SIX5, IGFL2, FAM98C, CAPN12, LGALS16, TTC9B, ZNF569, ZNF570, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, AP2A1, DBP, ZNF296, DEDD2, ZNF114, ZNF383, ZNF781, EID2, ZNF780B, ZNF540, SPACA4, DMPK, DMWD, ECH1, MEGF8, GGN, CADM4, ADM5, EMP3, ERCC1, ERCC2, ERF, AKT2, FBL, FCGRT, ZFP30, CARD8, SIRT2, CYP2G1P, SIPA1L3, CIC, ZC3H4, FLT3LG, FBXO46, ETHE1, RPL13A, FOSB, SYNGR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PRG1, CBLC, NUP62, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, LYPD3, BBC3, DKKL1, C5AR2, DHDH, EIF3K, IFNL2, IFNL3, IFNL1, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, LOC284412, HKR1, SLC6A16, GRIK5, GRIN2D, ARHGAP35, LGALS13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HNRNPL, HRC, PRMT1, ZNF546, MYPOP, NANOS2, APOC1, APOC1P1, NCCRP1, SYCN, LEUTX, ZNF404, ZNF284, APOC2, APOE, SELENOV, ZNF233, IRF3, KCNA7, B3GNT8, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, ZNF793, ACP7, PINLYP, LGALS4, LGALS7, LHB, LIG1, LIPE, SPRED3, LGALS17A, BCAM, MIR150, MAP3K10, PSG8, MIR330, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 IGFL4, CEACAM6, ATP1A3, NFKBIB, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, NOSIP, HSD17B14, ZNF571, PLAUR, PTOV1, RAB4B, POU2F2, PAF1, TRPM4, QPCTL, FAM83E, RASIP1, SARS2, TMEM160, PIH1D1, SAMD4B, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, MED29, AXL, SMG9, IRGC, CABP5, PRRG2, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, LGALS14, EXOSC5, MEIS3, CEACAM19, SLC17A7, PSMC4, CD177, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RCN3, PTGIR, PNMAL2, PRR12, LRFN1, PLEKHA4, PRX, SPTBN4, MARK4, CATSPERG, BAX, PVR, NECTIN2, SCAF1, BCAT2, BCKDHA, RELB, BCL3, TSKS, RPL18, MRPS12, RPS11, RPS16, RPS19, RRAS, RTN2, RYR1, CEACAM1, DMRTC2, C19orf33, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, CCER2, LOC644554, BLVRB, ZNF574, PLEKHG2, SLC1A5, PSG10P, LGALS7B, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SULT2B1, SULT2A1, SUPT5H, SNORD23, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR641, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, VASP, XRCC1, ZFP36, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, TBC1D17, GEMIN7, COQ8B, CNTD2, FUZ, OPA3, ITPKC, B9D2, CALM3, ACTN4, RSPH6A, MED25, SYMPK, MIA, DPF1, BCL2L12, TEX101, GRWD1, WDR87, CCDC8, ZNF541, LTBP4, AKT1S1, ZNF527, CNFN, SNORD35B, TEAD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 ZNF607, PPFIA3, PLA2G4C, NAPA, FCGBP, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, YIF1B, ARHGEF1, DYRK1B, ZNF585B, NUMBL, TIMM50, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, KCNK6, PPP1R14A, CD37, GMFG, DHX34, CD79A) 0.371697823312124 477 0.0937909274803325 0.988096467982992 22340 0.334213701456261 3 2 1 -6.94965573434393 LTS-033 NA NA NA NA LTS-033 chr19 50412218 50435928 23711 * c(ATF5, NUP62, IL4I1) 0 1 NA 0.937951816038828 28 0.192697624112557 3 3 0 -5.76441022359237 LTS-033 chr19 50435929 51172082 736154 * c(SNAR-F, SNAR-B2, SNAR-D, MIR4751, FAM71E1, SIGLEC11, JOSD2, IZUMO2, ATF5, NAPSB, ZNF473, EMC10, C19orf81, KCNC3, SIGLEC16, LOC400710, MYBPC2, SHANK1, VRK3, POLD1, ASPDH, SPIB, NR1H2, MYH14, SYT3, LRRC4B, NAPSA) 0.33206766175475 24 0.138208307390996 1.02519586566386 1334 0.39617360856949 4 3 1 -6.75759492004408 LTS-033 chr19 51172083 51172298 216 * SHANK1 NA 0 NA 1.057 1 NA NA NA NA NA LTS-033 chr19 51172299 54083108 2910810 * c(SIGLEC14, LOC100129083, ERVV-2, ZNF816-ZNF321P, KLK11, KLK8, BIRC8, CLDND2, ZNF816, ZNF813, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, ETFB, FPR1, FPR2, FPR3, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, GPR32, HAS1, VN1R2, VN1R4, ZNF677, KLK3, KLK1, KLK2, ZNF808, ZNF761, ZNF818P, LIM2, NA NA NA NA NA NA NA NA NA LTS-033 ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, NKG7, SHANK1, PPP2R1A, ZNF331, KLK15, ZNF701, ZNF83, ZNF415, KLK7, KLK6, KLK10, ZNF350, KLKP1, CLEC11A, FAM90A27P, ZNF649, SNORD88A, SNORD88B, SNORD88C, MIR643, CEACAM18, LINC01530, ZNF28, ZNF137P, ZNF175, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CTU1, ZNF765, ZNF845, ACPT, CD33, SIGLEC6, KLK4, ZNF432) 0.337572847713517 156 0.073029288118377 1.09141650985992 4412 0.404297470038216 4 3 1 -6.75729447968067 LTS-033 NA NA NA NA LTS-033 chr19 54083109 54744209 661101 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB3, OSCAR, TMC4, PRPF31, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, NA NA NA NA NA NA NA NA NA LTS-033 MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, NLRP12, MYADM) 0.356872171316128 28 0.151224993560088 0.885799539984649 1523 0.294897627224863 3 2 1 -6.78339994963947 LTS-033 NA NA NA NA LTS-033 chr19 54744210 54744256 47 * c(LILRB3, LILRA6) NA 0 NA 0.424 1 NA NA NA NA NA LTS-033 chr19 54744257 54746753 2497 * c(LILRB3, LILRA6) 0.485120486340162 2 0.00565685424949239 0.256416539473259 39 0.304991101836972 0 0 0 -17.7030076823402 LTS-033 chr19 54746754 54754227 7474 * LILRA6 NA 0 NA 0.704 1 NA NA NA NA NA LTS-033 chr19 54754228 55401595 647368 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, FCAR, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.364423848752869 41 0.14964654698452 0.861991945544258 1339 0.392559949842844 3 2 1 -6.77391505058315 LTS-033 chr19 55401596 55447840 46245 * c(NLRP7, FCAR, NCR1) 0.466 1 NA 0.811055184417867 67 0.158597958777116 2 2 0 -5.76595607243279 LTS-033 chr19 55447841 56249765 801925 * c(SBK3, ZNF865, RNU6-64P, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, NLRP7, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, GP6, ZNF581, PPP1R12C, EPS8L1, NLRP2, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.397656012441237 64 0.101233629628978 0.904139690549759 2337 0.440983533592863 3 2 1 -6.73710864793616 LTS-033 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 2.36 1 NA NA NA NA NA LTS-033 chr19 56270381 56284597 14217 * c(RFPL4A, RFPL4AL1) 0.252536581819689 7 0.0644511627587306 1.43942252827186 62 1.01683788116555 7 6 1 -6.73373589316985 LTS-033 chr19 56284598 56288851 4254 * character(0) NA 0 NA 0.961 1 NA NA NA NA NA LTS-033 chr19 56288852 59082605 2793754 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, MZF1-AS1, PEG3-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN5B, ZSCAN22, NA NA NA NA NA NA NA NA NA LTS-033 ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, RNF225, ZSCAN18, AURKC, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, GALP, ZNF551, UBE2M, ZNF835, ZNF264) 0.412349501540045 131 0.0737989914110904 0.911244424600455 4812 0.387422844356458 3 2 1 -6.7793542211191 LTS-033 NA NA NA NA LTS-033 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.896324677560226 9 0.0861415179289934 3 NA NA -5.7646376697136 LTS-033 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.414 1 NA 1.10882984401463 39 0.368073683068134 4 4 0 -5.76446814976157 LTS-033 chr20 138126 6088261 5950136 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, SDCBP2-AS1, LINC00658, FKBP1A-SDCBP2, SIRPB1, NOP56, CENPB, RBCK1, CHGB, RNF24, SLC52A3, HSPA12B, TMC2, TBC1D20, SIRPD, C20orf141, PROKR2, C20orf96, SRXN1, DEFB127, DEFB129, SIRPA, STK35, CSNK2A1, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, FKBP1A, UBOX5, PRND, DEFB128, SPEF1, C20orf194, SDCBP2, GNRH2, SIRPB2, TMEM230, IDH3B, RSPO4, NA NA NA NA NA NA NA NA NA LTS-033 TGM6, ITPA, DEFB132, C20orf202, MIR103A2, OXT, PCNA, ANGPT4, TRMT6, PDYN, SMOX, CRLS1, C20orf27, AVP, AP5S1, TMEM74B, SIRPG, FERMT1, NSFL1C, PRNP, GPCPD1, CPXM1, MAVS, EBF4, TRIB3, PTPRA, FASTKD5, GFRA4, RAD21L1, LOC643406, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SOX12, SNORA51, SNORD110, TCF15, TGM3, LINC01433, ZNF343, NRSN2, PANK2, ADAM33, FAM110A, SLC4A11, MCM8, ATRN, ZCCHC3, SCRT2, CDS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PSMF1, SNPH, LZTS3, RASSF2, CDC25B, SLC23A2) 0.400870168888779 203 0.106420474155196 1.18808657896112 7160 0.402942313691338 5 3 2 -6.78932943185365 LTS-033 NA NA NA NA LTS-033 chr20 6088262 25900251 19811990 * c(C20orf78, LOC100130264, SNAP25-AS1, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, JAG1, LINC00656, XRN2, BTBD3, CD93, NINL, PLCB1, FLRT3, LAMP5, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, NA NA NA NA NA NA NA NA NA LTS-033 LOC339593, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, ESF1, PLCB4, HAO1, RIN2, DZANK1, SPTLC3, FERMT1, KIF16B, TASP1, KIZ, TMX4, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, ANKEF1, GZF1, NKX2-4, BMP2, SNAP25, SNRPB2, SSTR4, SNORD17, THBD, FAM182B, ZNF133, NDUFAF5, SYNDIG1, SEL1L2, MKKS, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 GINS1) 0.389633907495045 146 0.125842357390335 1.23325656311514 7358 0.620780912554822 5 3 2 -6.74456417779462 LTS-033 NA NA NA NA LTS-033 chr20 25900252 26061820 161569 * c(LOC100134868, FAM182A) NA 0 NA 0.397 1 NA NA NA NA NA LTS-033 chr20 26061821 26188976 127156 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.321458262557233 9 0.135219369092515 0.772656550108758 50 0.756844694930802 2 2 0 -6.74875743433554 LTS-033 chr20 26188977 26189020 44 * MIR663AHG NA 0 NA 1.24613379055206 4 0.345396873176351 5 NA NA -5.76441013672676 LTS-033 chr20 29625845 29625876 32 * FRG1BP 0.337 1 NA 2.245 1 NA NA NA NA NA LTS-033 chr20 29625877 32379263 2753387 * c(MCTS2P, MIR3193, HM13-AS1, PXMP4, DEFB118, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, MLLT10P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, MAPRE1, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, C20orf203, REM1, HCK, BPIFA4P, ID1, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, BCL2L1, NECAB3, SNTA1, BPIFB2, NA NA NA NA NA NA NA NA NA LTS-033 HM13, PDRG1, COX4I2, ZNF341, MYLK2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.329066443985211 89 0.08009443322036 1.48320243495114 3744 0.419227496344391 7 5 2 -6.78540278015495 LTS-033 NA NA NA NA LTS-033 chr20 32379264 32442209 62946 * c(CHMP4B, ZNF341) NA 0 NA 1.55429771079475 55 0.315521019592537 7 NA NA -5.76442064386108 LTS-033 chr20 32442210 32636915 194706 * RALY NA 0 NA 0.95 1 NA NA NA NA NA LTS-033 chr20 32636916 33037336 400421 * c(MIR4755, AHCY, RALY, ASIP, ITCH, EIF2S2) 0.436 1 NA 1.19714594655312 247 0.274934915623144 5 5 0 -5.77033679579614 LTS-033 chr20 33037337 49236638 16199302 * c(ADA, ACOT8, SNORD12B, ZNF663P, LOC100131496, LOC100287792, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, MIR499B, LINC00489, TRERNA1, SGK2, RBM12, MMP24-AS1, MYL9, WFDC2, CEBPB, PROCR, ARFGEF2, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, CEP250, TP53RK, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, PIGU, HMGB3P1, FAM83C, SLC32A1, WFDC3, MROH8, SOGA1, NA NA NA NA NA NA NA NA NA LTS-033 TLDC2, RIMS4, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, FAM65C, CNBD2, R3HDML, CSE1L, ADIG, GTSF1L, WFDC5, WFDC13, EPB41L1, EYA2, DLGAP4, ZHX3, NCOA6, SLC9A8, ZMYND8, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, TRPC4AP, SNORD12C, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, WFDC10B, LINC00494, LINC01270, GSS, HNF4A, LOC339568, ARHGAP40, EIF6, KCNB1, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, SPINT4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 LBP, MMP9, ZFAS1, MYBL2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, OSER1, PIGT, ERGIC3, PI3, PLCG1, PLTP, CTSA, UQCC1, DDX27, ZNF334, EDEM2, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, ZNFX1, PTGIS, NDRG3, MIR499A, SLC12A5, PREX1, MYH7B, PTPN1, NCOA5, TP53INP2, RPRD1B, RBL1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, NORAD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SLC13A3, LPIN3, SLPI, SNAI1, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, SNORD12, MIR644A, MIR645, TGM2, TNNC2, TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, SLC2A10, FAM83D, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, TOX2, KIAA1755, MATN4, WISP2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, B4GALT5, CD40, RBM39, TTI1, SPATA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MAFB) 0.41105534223372 292 0.0852985101865292 1.15668868675265 16152 0.332657804223839 4 2 2 -6.99729055102493 LTS-033 NA NA NA NA LTS-033 chr20 49236639 49247267 10629 * FAM65C NA 0 NA 0.961 1 NA NA NA NA NA LTS-033 chr20 49247268 62905721 13658454 * c(UCKL1-AS1, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, ARFRP1, OGFR-AS1, RGS19, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, TSHZ2, C20orf85, ZNF831, MIR1-1HG, NA NA NA NA NA NA NA NA NA LTS-033 COL9A3, GATA5, ZBTB46, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, FAM65C, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, ADNP, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, MOCS3, GNAS, SLCO4A1, NPBWR2, LINC00176, C20orf197, MIR646HG, KCNG1, KCNQ2, FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, MYT1, NFATC2, NTSR1, OPRL1, STMN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, PCMTD2, MRGBP, PPP4R1L, RBM38, BCAS4, ZFP64, ARFGAP1, DOK5, SLC2A4RG, PSMA7, PMEPA1, CASS4, SALL4, RAB22A, ZNF512B, PTK6, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, SRMS, AURKA, TAF4, TCEA2, MIR647, TFAP2C, TPD52L2, HAR1A, HAR1B, ZNF217, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CABLES2, PARD6B, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, DPM1, VAPB, OSBPL2) 0.412851075734575 279 0.101718687288518 0.89541782720625 11060 0.293248190100969 3 2 1 -6.9483739544426 LTS-033 NA NA NA NA LTS-033 chr20 62905722 62959313 53592 * c(LINC00266-1, PCMTD2) NA 0 NA 0.882591024784389 51 0.459367419265181 3 NA NA -5.76496515208132 LTS-033 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.47 1 NA 0.54909314106373 31 0.476958261062432 1 1 0 -5.76801221969911 LTS-033 chr21 9907272 10944816 1037545 * c(TEKT4P2, TPTE) 0.289215260988046 24 0.157815499505144 1.19559197405068 98 0.955661828253627 5 4 1 -6.74638051210513 LTS-033 chr21 10944817 10959723 14907 * TPTE NA 0 NA 1.357 1 NA NA NA NA NA LTS-033 chr21 10959724 11059877 100154 * c(BAGE, TPTE, BAGE3) 0.35665015454566 9 0.0971426499764364 1.42157888161503 53 1.58647790359862 4 3 1 -6.73588753310826 LTS-033 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.76189249656567 5 0.188104226427797 8 NA NA -5.76481541816414 LTS-033 chr21 14745307 14756926 11620 * character(0) 0.445 1 NA 0.999240407443207 15 0.743821932095758 3 3 0 -5.76446138877844 LTS-033 chr21 14756927 31587382 16830456 * c(GRIK1-AS2, MIR3156-3, LINC01549, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, USP16, CCT8, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, LIPI, ABCC13, CXADR, LINC00189, C21orf91-OT1, LINC00314, GABPA, LTN1, CLDN17, D21S2088E, LINC00307, LINC00515, GRIK1, N6AMT1, USP25, POTED, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, ANKRD20A11P, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, RBM11, LINC00158, NA NA NA NA NA NA NA NA NA LTS-033 CHODL-AS1, LINC00113, NA, LINC00308, MRPL39, C21orf91, TMPRSS15, MAP3K7CL, BACH1, JAM2, SAMSN1, GRIK1-AS1, HSPA13, NRIP1, CLDN8, ADAMTS1) 0.421643909604872 110 0.0831414728264609 1.19469938250618 3439 0.348707395278183 5 3 2 -6.93122373695733 LTS-033 NA NA NA NA LTS-033 chr21 31587383 31587793 411 * CLDN8 0.451 1 NA 1.25545457461083 9 0.776435766821699 5 5 0 -5.76441014238778 LTS-033 chr21 31587794 32555000 967207 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.399764680851998 25 0.0963254033644985 1.20916757857382 617 0.461828163788089 5 3 2 -6.73639753785433 LTS-033 chr21 32555001 32559236 4236 * TIAM1 NA 0 NA 0.773 1 NA NA NA NA NA LTS-033 chr21 32559237 33694224 1134988 * c(LINC00159, HUNK, MIS18A, MRAP, SCAF4, SOD1, TIAM1, URB1) 0.317346465936771 29 0.133450808265072 0.946513414124255 637 0.695275237772914 2 2 0 -6.79511166561135 LTS-033 chr21 33694225 33719695 25471 * URB1 0.357 1 NA 0.954050146639675 69 0.197412573589991 3 3 0 -5.76453021502036 LTS-033 chr21 33719696 33974547 254852 * c(TCP10L, C21orf59, EVA1C, SNORA80A, URB1-AS1, URB1) 0.433305388620735 4 0.0471663722016721 0.923977391616057 232 0.182338621093284 2 1 1 -7.03761484919626 LTS-033 chr21 33974548 36265344 2290797 * c(IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, OLIG2, LINC00310, OLIG1, RCAN1, GART, DONSON, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, CLIC6, DNAJC28, C21orf62, C21orf59, ITSN1, MRPS6, SLC5A3, SON, LINC01548, TMEM50B, RUNX1, SYNJ1, PAXBP1, CRYZL1, KCNE2) 0.425102603311852 54 0.0566881572271609 0.849751295930854 3032 0.938975595513713 2 1 1 -6.80299030768543 LTS-033 chr21 36265345 36410711 145367 * c(RUNX1-IT1, RUNX1) NA 0 NA 0.928 1 NA NA NA NA NA LTS-033 chr21 36410712 48084747 11674036 * c(LOC100129027, LOC100133286, MIR3197, ITGB2-AS1, LOC100506403, CBR3-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DIP2A-IT1, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, ADARB1, WDR4, FTCD, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, DYRK1A, PLAC4, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, DSCR9, NA, NA NA NA NA NA NA NA NA NA LTS-033 BACE2, DSCR10, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, HLCS, HMGN1, AIRE, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, KCNJ6, KCNJ15, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00114, LSS, MX1, MX2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, BRWD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SLC37A1, PCBP3, C21orf58, YBEY, TSPEAR, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, AGPAT3, PWP2, S100B, PRDM15, LOC642852, SH3BGR, TMPRSS3, SIM2, SLC19A1, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MCM3AP, RSPH1, UMODL1, ABCG1, DOPEY2) 0.395950624910811 345 0.0874908498273118 0.883060726383964 11334 0.324064148023542 3 2 1 -6.96303882469037 LTS-033 NA NA NA NA LTS-033 chr21 48084748 48084993 246 * PRMT2 NA 0 NA 1.02607453917058 7 0.21954650228748 4 NA NA -5.76442257639413 LTS-033 chr22 16157787 16157791 5 * character(0) 0.148 1 NA 0.587 1 NA NA NA NA NA LTS-033 chr22 16157792 18211372 2053581 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, OR11H1, SLC25A18) 0.382704575125298 40 0.12097011444875 0.9439841860563 1187 0.33744044059604 3 2 1 -6.73866458445598 LTS-033 chr22 18211373 18211508 136 * BCL2L13 NA 0 NA 1.307 1 NA NA NA NA NA LTS-033 chr22 18211509 18656690 445182 * c(FLJ41941, MIR3198-1, USP18, BCL2L13, TUBA8, PEX26, MICAL3, BID, MIR648) 0.46185598705786 20 0.0357003243387891 1.08315107990355 674 0.243367716356214 4 2 2 -7.88521741959759 LTS-033 chr22 18656691 18775073 118383 * c(USP18, GGT3P) NA 0 NA 0.374 1 NA NA NA NA NA LTS-033 chr22 18775074 24238079 5463006 * c(MIR301B, MIR1286, MIR1306, IGLL5, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, TUBA3FP, C22orf39, TANGO2, ZNF280A, COMT, CRKL, ZNF280B, LINC00895, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, HIC2, PRAME, TSSK2, SDF2L1, PPIL2, DGCR11, DGCR9, POM121L1P, DGCR5, DGCR10, FBXW4P1, POM121L4P, RGL4, GGT3P, TRMT2A, RSPH14, GNAZ, LOC284865, MIF-AS1, GSC2, POM121L8P, YPEL1, ZDHHC8, VPREB3, SERPIND1, IGLL1, PI4KAP2, NA NA NA NA NA NA NA NA NA LTS-033 CCDC188, LRRC74B, BCRP2, CHCHD10, MIR130B, MIR185, ARVCF, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, DGCR8, GNB1L, MAPK1, PRODH, RANBP1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, MRPL40, RTN4R, SLC7A4, SLC25A1, SMARCB1, SLC2A11, TBX1, CLDN5, MIR650, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, VPREB1, ZNF70, ZNF74, C22orf29, THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, TMEM191A, KLHL22, DGCR6L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 RIMBP3, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20, DGCR2) 0.400046667248928 169 0.100181977278493 0.916472005885838 6947 0.27663876304728 3 2 1 -6.75725962168124 LTS-033 NA NA NA NA LTS-033 chr22 24238080 24284810 46731 * MIF-AS1 0 1 NA 1.20678979950301 9 1.04738095319283 5 5 0 -5.76444176627818 LTS-033 chr22 24284811 24552191 267381 * c(DDTL, DDT, CABIN1, GSTTP1, GSTT1, LOC391322, GSTTP2) 0.297248266364304 7 0.0842575417000362 0.96031469211628 280 0.29380395755706 2 2 0 -6.81159885838892 LTS-033 chr22 24552192 24560338 8147 * CABIN1 NA 0 NA 1.238 1 NA NA NA NA NA LTS-033 chr22 24560339 24640692 80354 * c(CABIN1, GGT5, SUSD2) 0.303327749103923 4 0.0424293530471536 1.25032346519241 233 0.278647553779802 5 4 1 -6.75551657687385 LTS-033 chr22 24640693 25264775 624083 * c(SGSM1, ADORA2A, SPECC1L, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, TOP1P2, GUCD1) 0.170461305707046 2 0.266579256507328 0.871379699030404 686 0.274003960168295 3 3 0 -6.81308311261841 LTS-033 chr22 25264776 25323373 58598 * SGSM1 0.37 1 NA 0.891216161990776 137 0.251888227502088 3 3 0 -5.76583023726684 LTS-033 chr22 25323374 36622945 11299572 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, CHEK2, PIK3IP1, EMID1, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, PES1, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, NA NA NA NA NA NA NA NA NA LTS-033 PISD, OSBP2, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, SEC14L3, INPP5J, TTC28-AS1, SEC14L4, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LIF, LIMK2, SRRD, MB, MCM5, MN1, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, TUG1, CCDC157, ZMAT5, EIF4ENIF1, ASPHD2, RFPL1, SLC5A1, SMTN, SLC5A4, GATSL3, TCN2, TIMP3, SEC14L6, XBP1, YWHAH, APOL6, APOL5, APOL4, APOL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SYN3, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.414964464358784 240 0.0915783920084055 0.899840080694657 9672 0.256207399742362 3 2 1 -6.93343068336283 LTS-033 NA NA NA NA LTS-033 chr22 36622946 36622955 10 * APOL2 NA 0 NA 1.33 1 NA NA NA NA NA LTS-033 chr22 36622956 37099275 476320 * c(CACNG2, APOL2, TXN2, MYH9, FOXRED2, APOL1, EIF3D) 0.387333860037199 30 0.0820834730729892 1.17777647114176 637 0.286677841313721 5 3 2 -6.76480924684527 LTS-033 chr22 37099276 37099360 85 * character(0) NA 0 NA 0.816 1 NA NA NA NA NA LTS-033 chr22 37099361 42487006 5387646 * c(LOC100130899, NDUFA6-AS1, MIR1281, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, APOBEC3A_B, DNAL4, TAB1, SLC25A17, DDX17, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, APOBEC3D, CSF2RB, CSNK1E, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, APOBEC3A, APOBEC3F, EP300, TNRC6B, ZC3H7B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, NA NA NA NA NA NA NA NA NA LTS-033 MAFF, XRCC6, CBY1, SUN2, TMEM184B, GGA1, SNORD43, CYTH4, CSDC2, APOBEC3C, DESI1, SGSM3, MCHR1, CARD10, H1F0, TEX33, LINC00634, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MIR33A, MFNG, MGAT3, MPST, SHISA8, NAGA, ATF4, NCF4, NDUFA6, SNU13, ACO2, EIF3L, PDGFB, PMM1, POLR2F, MIEF1, SEPT3, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SOX10, SREBF2, SSTR3, ST13, TEF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR658, MIR659, TST, CENPM, NOL12, C22orf46, KCTD17, CCDC134, BAIAP2L2, L3MBTL2, PLA2G6, C22orf23, GALR3, PHF5A, MICALL1, CACNA1I, SYNGR1, RPS19BP1, SMDT1, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1, RBX1) 0.435461286315158 140 0.0936243272094733 1.06264195356169 9717 0.471685738685155 4 2 2 -6.7991160519973 LTS-033 NA NA NA NA LTS-033 chr22 42487007 42522457 35451 * NDUFA6-AS1 NA 0 NA 0.567 1 NA NA NA NA NA LTS-033 chr22 42522458 42526938 4481 * c(NDUFA6-AS1, CYP2D6) 0.383607488535954 2 0.0883883476483184 0.642236340102465 61 0.452743436314303 3 2 1 -6.74300663613777 LTS-033 chr22 42526939 42536170 9232 * NDUFA6-AS1 NA 0 NA 1.044 1 NA NA NA NA NA LTS-033 chr22 42536171 51177922 8641752 * c(LINC01310, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, RRP7A, NA NA NA NA NA NA NA NA NA LTS-033 MCAT, LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.428429003670713 225 0.101987992990772 1.07897389190521 8385 0.316404582879521 4 2 2 -6.7683755547712 LTS-033 NA NA NA NA LTS-033 chr22 51177923 51220846 42924 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.922643679303082 93 0.315022933038765 3 NA NA -5.76447635023249 LTS-033 chrX 2699993 2700027 35 * XG 0.309 1 NA 0.76 1 NA NA NA NA NA LTS-033 chrX 2700028 12725081 10025054 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2, FRMPD4) 0.285132924405083 49 0.103714945721368 0.809150948486972 2816 0.223676789186788 2 2 0 -6.88909878309932 LTS-033 chrX 12725082 13734125 1009044 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, ATXN3L, RAB9A, FRMPD4) 0.335668906109927 11 0.0622211598033396 0.705350003321474 792 0.123781081371993 2 2 0 -7.31540628034872 LTS-033 chrX 13734126 13734586 461 * TRAPPC2 NA 0 NA 0.922 1 NA NA NA NA NA LTS-033 chrX 13734587 47057511 33322925 * c(SUPT20HL1, PHKA2-AS1, LOC100132831, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, NA NA NA NA NA NA NA NA NA LTS-033 MAP7D2, KLHL34, TAB3, HYPM, GK, GPR82, GLRA2, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, GRPR, SH3KBP1, CA5BP1, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAP3K15, LOC392452, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, OTC, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, NDUFB11, PPEF1, BCOR, GEMIN8, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, TMEM27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MID1IP1, ACE2, RBBP7, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TRAPPC2, ZNF674, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, DYNLT3, TSPAN7, LINC01545, LOC729609, UBA1, KDM6A, XK, ZFX, APOO, S100G, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, ZRSR2, USP9X, RBM10, TMEM47, SRPX, SLC9A7, OFD1, PIR, INE2, CASK, AP1S2, RGN, REPS2, MED14, SYAP1, SYTL5, PCYT1B, JADE3) 0.268046975068693 123 0.122726282856601 0.807931564217709 12807 0.21533077274893 2 2 0 -7.22298375981525 LTS-033 NA NA NA NA LTS-033 chrX 47057512 47057636 125 * UBA1 NA 0 NA 0.904 1 NA NA NA NA NA LTS-033 chrX 47057637 56292259 9234623 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MTRNR2L10, MIR4769, MIR4536-1, HUWE1, PQBP1, SSX3, TIMM17B, RRAGB, EBP, MAGED2, PIM2, WDR45, PRAF2, KLF8, CLCN5, DGKK, FOXR2, PAGE3, USP27X-AS1, RIBC1, USP51, XAGE3, XAGE5, NUDT10, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, APEX2, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, MAGEH1, NA NA NA NA NA NA NA NA NA LTS-033 HSD17B10, ERAS, ZNF81, ITIH6, ARAF, KCND1, SPACA5, USP27X, PAGE2B, CXXC1P1, GLOD5, PRICKLE3, MIRLET7F2, MIR188, MIR98, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PFKFB1, PLP2, GPR173, GNL3L, FAM120C, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, SNORA11, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, TRO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, KDM5C, SMC1A, UXT, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, BMP15, SLC38A5, MAGED1, PAGE4) 0.281029110675586 75 0.124484968519847 0.830347406279164 8517 0.215368720767286 2 2 0 -7.16012514417971 LTS-033 NA NA NA NA LTS-033 chrX 56292260 56295247 2988 * KLF8 NA 0 NA 0.617 1 NA NA NA NA NA LTS-033 chrX 56295248 57618870 1323623 * c(KLF8, FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420) 0.389746432898433 3 0.04308518693627 0.710831398869945 269 0.190171641940736 2 1 1 -7.02018866707586 LTS-033 chrX 57618871 57937169 318299 * c(ZXDB, ZXDA) NA 0 NA 0.666315078745312 197 0.178112306370787 1 NA NA -5.78897572476446 LTS-033 chrX 61999880 63488830 1488951 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, MTMR8, LINC01278) 0 1 NA 0.749189585696867 441 0.259469738995794 2 2 0 -5.7876198507603 LTS-033 chrX 63488831 117081325 53592495 * c(MIR374B, ARMCX4, UBE2DNL, LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, FTX, MIR764, TRPC5OS, MIR4328, MIR4329, MIR374C, MIR676, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, CDX4, CYSLTR1, TMSB15A, MID2, CHM, SLC6A14, VSIG4, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, COX7B, MAP2K4P1, PIH1D3, MUM1L1, FAM199X, APOOL, HDX, OTUD6A, UPRT, MAGEE2, RBMXL3, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, AMOT, CXorf65, AWAT1, NA NA NA NA NA NA NA NA NA LTS-033 AWAT2, ZDHHC15, TCEAL6, H2BFWT, DCX, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, TSC22D3, AGTR2, EDA, EFNB1, CT83, ZCCHC5, NRK, TMEM31, ACSL4, ABCB7, KCNE5, KIF4A, CENPI, BRWD3, IL1RAPL2, ITGB1BP2, BEX3, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, RAB40AL, CXCR3, LPAR4, H2BFM, LOC286437, YIPF6, TTC3P1, FAM133A, TMSB15B, GUCY2F, SNX12, RPA4, HNRNPH2, HTR2C, RGAG4, NHSL2, PABPC1L2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, ZC3H12B, SATL1, ZCCHC16, LHFPL1, DGAT2L6, RAB41, IGBP1, IL2RG, IL13RA2, AR, ZCCHC13, FLJ44635, ARL13A, SLC25A53, LINC00890, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, GLRA4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, PAK3, TBX22, RLIM, TCEAL9, RAB9B, LUZP4, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 CPXCR1, CHIC1, PLP1, PLS3, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, NUP62CL, GDPD2, TBC1D8B, CXorf57, RBM41, JPX, MIR448, MTMR8, BEX1, HDAC8, ZC4H2, NXT2, NXF5, NXF4, NXF3, KLHL4, TEX13B, TEX13A, TEX11, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, RGAG1, LRCH2, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, ZCCHC18, SH3BGRL, PABPC1L2B, NAP1L6, ARMCX5, FAM226B, SLC16A2, MIR545, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 SNORA35, TAF1, SERPINA7, SNORD96B, MIR421, BTK, TDGF1P3, TSPAN6, TRPC5, XIST, ZNF711, HMGN5, RNF128, MORC4, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, LAS1L, CAPN6, FRMD8P1, MAGT1, TMEM164, ZMAT1, GPR174, BEX2, IRS4, OGT, SLC7A3, TCEAL3, FGF16, KLHL13, TGIF2LX, CLDN2, TCEAL8, CHRDL1, ZMYM3, RIPPLY1, TCEAL1, TSIX, ACRC, SYTL4, ITM2A, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, AMMECR1, MED12) 0.31919290480337 187 0.114036131386886 0.714752568417753 19705 0.312413472688901 2 2 0 -8.62709663899833 LTS-033 NA NA NA NA LTS-033 chrX 117081326 139796573 22715248 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, NA NA NA NA NA NA NA NA NA LTS-033 GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 MMGT1, RAB33A, ARHGEF6, CD40LG) 0.304051181153371 102 0.122845081685636 0.679678147511821 9488 0.191410153774464 1 1 0 -8.76735634075232 LTS-033 NA NA NA NA LTS-033 chrX 139796574 148073497 8276924 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, FMR1NB, NA, NA, FMR1, AFF2, LDOC1, LINC00632, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SLITRK2, TMEM257, MAGEC1) 0.335497445953652 23 0.061529356083735 0.765242760428489 1215 0.298210595474335 2 2 0 -6.95499413328728 LTS-033 chrX 148073498 154507173 6433676 * c(CSAG4, LINC00893, SMIM9, CMC4, LINC00894, NA, NA, MIR718, MIR2114, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, DKC1, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, F8, FLNA, AFF2, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IDS, IRAK1, L1CAM, ARHGAP4, NA NA NA NA NA NA NA NA NA LTS-033 MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MPP1, MTCP1, MTM1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, IKBKG, MTMR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-033 FATE1, FAM50A, CXorf40A, FAM58A, GPR50) 0.325636655378505 86 0.10895216699177 0.68870611848566 7392 0.193434932170637 1 1 0 -7.65976823502112 LTS-033 NA NA NA NA LTS-033 chrX 154507174 154564019 56846 * CLIC2 NA 0 NA 0.644462662027024 37 0.104206381618258 1 NA NA -5.76736225366337 LTS-033 chrX 154564020 154577837 13818 * character(0) NA 0 NA 0.466 1 NA NA NA NA NA LTS-033 chrX 154577838 154774986 197149 * TMLHE NA 0 NA 0.659471406861405 67 1.32296544562969 1 NA NA -5.76460492625935 LTS-033 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.0649421063840225 25 0.0188654887735957 0 NA NA -27.7109583164277 LTS-033 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 1.14652088377135 19 0.578202214774028 4 NA NA -5.79550873771175 LTS-033 chr1 65893 879317 813425 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.448 1 NA 1.43402312506298 103 0.338184128907222 4 4 0 -5.77873314025652 LTS-034 chr1 879318 1608220 728903 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.426058276335093 71 0.0805559055783078 1.36787182237681 2948 0.384680600303094 4 2 2 -6.74706729760978 LTS-034 chr1 1608221 1608229 9 * c(SLC35E2B, CDK11B) 0.497 1 NA 0.485 1 NA NA NA NA NA LTS-034 chr1 1608230 1646772 38543 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.302 1 NA 0.69945988652739 122 0.495466660593752 2 2 0 -5.76515533140058 LTS-034 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 1.304 1 NA NA NA NA NA LTS-034 chr1 1647807 1671167 23361 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.425945637712992 14 0.0483605960751855 0.968798965795944 130 0.243149267179636 2 1 1 -6.7848371598744 LTS-034 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 1.915 1 NA NA NA NA NA LTS-034 chr1 1682940 12856273 11173334 * c(LOC100129534, NA, LINC01134, TTC34, NPPA-AS1, MIR4251, MIR4252, ENO1-AS1, APITD1-CORT, MIR4689, MIR4632, MIR4417, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, RER1, PARK7, ACOT7, LOC115110, RBP7, CLCN6, AADACL3, TPRG1L, FAM213B, CORT, ACTRT2, C1orf127, PHF13, CCDC27, SLC2A7, CALML6, DFFA, DFFB, MEGF6, TMEM201, FAAP20, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, ICMT, MTOR, GABRD, CHD5, NPHP4, FBXO2, FBXO6, NA NA NA NA NA NA NA NA NA LTS-034 ARHGEF16, GNB1, LOC284661, UBIAD1, ZBTB48, C1orf174, TMEM52, AADACL4, TNFRSF9, DRAXIN, CENPS, GPR153, HES5, SMIM1, RNF207, HES3, PRAMEF12, MIR34A, LINC00982, MTHFR, RERE, NPPA, NPPB, WRAP73, SLC45A1, PEX10, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, HES2, CASZ1, VPS13D, PANK4, DNAJC11, PRKCZ, AJAP1, CTNNBIP1, AGTRAP, TP73-AS1, PLEKHG5, LRRC47, DISP3, MIIP, RPL22, PRDM16, PIK3CD-AS1, NMNAT1, SKI, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PRAMEF1, SLC2A5, NADK, SRM, SNORA59B, MIR551A, TNFRSF1B, TP73, LINC01346, CA6, MMEL1, NOL9, MORN1, GPR157, SPSB1, TAS1R1, ESPN, SLC25A33, LZIC, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, PLCH2, CEP104, KLHL21, MFN2) 0.45633088008135 272 0.0521302632356528 1.33527035977392 12171 0.37767891187692 4 2 2 -6.8127746439457 LTS-034 NA NA NA NA LTS-034 chr1 12856274 12907350 51077 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1) 0.052 1 NA 1.31377949575407 18 0.617846470765925 4 4 0 -5.76448033982985 LTS-034 chr1 12907351 13183973 276623 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.352216251444524 15 0.0863240296512975 1.27709860723474 69 0.244859953536087 3 2 1 -6.83403756646826 LTS-034 chr1 13183974 13801621 617648 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, NA, HNRNPCL2, PRAMEF19, PRAMEF20, NA) 0.477 1 NA 1.1910110595885 21 0.579990615687628 3 3 0 -5.77960777876032 LTS-034 chr1 13801622 16362743 2561122 * c(PDPN, CTRC, FHAD1, CLCNKA, CLCNKB, LRRC38, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.437814850502313 66 0.0702242047141791 1.35753962860391 2409 0.343448790996206 4 2 2 -6.73318482020315 LTS-034 chr1 16362744 16363196 453 * CLCNKB NA 0 NA 1.705 1 NA NA NA NA NA LTS-034 chr1 16363197 16371067 7871 * CLCNKB 0.43 1 NA 1.45703699752963 5 0.427458536000862 4 4 0 -5.76455135785148 LTS-034 chr1 16371068 16372003 936 * CLCNKB 0.386 1 NA 1.7401710937174 5 0.333544899526286 5 5 0 -5.7644252180865 LTS-034 chr1 16372004 16456861 84858 * c(CLCNKB, EPHA2, FAM131C) 0.350655541182933 28 0.0714264616090523 1.91477971101243 192 20.9815060280179 6 4 2 -6.73383063636143 LTS-034 chr1 16456862 16458243 1382 * EPHA2 NA 0 NA 1.217 1 NA NA NA NA NA LTS-034 chr1 16458244 16802521 344278 * c(CROCCP3, ARHGEF19, EPHA2, SZRD1, SPATA21, FBXO42, NECAP2, RSG1) 0.476150657322949 4 0.0416213086451319 1.34967191091982 648 0.268455512446615 4 2 2 -7.19355195231228 LTS-034 chr1 16802522 16978916 176395 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.353321611844932 26 0.0820494035041366 0.960564028064524 159 0.306809374364724 3 2 1 -6.74810437659234 LTS-034 chr1 16978917 17009683 30767 * character(0) NA 0 NA 2.267 1 NA NA NA NA NA LTS-034 chr1 17009684 17012093 2410 * character(0) 0.466044919525996 5 0.0266589572189161 2.42057231138188 56 0.637561826642882 8 4 4 -7.32350595518102 LTS-034 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.686 1 NA NA NA NA NA LTS-034 chr1 17017583 17273493 255911 * c(MST1L, ESPNP, CROCC) 0.315132062237213 39 0.0816619955148721 1.73281248469098 291 0.550623875509477 7 5 2 -6.7800551108427 LTS-034 chr1 17273494 17274945 1452 * CROCC NA 0 NA 2.18722764877337 5 0.640815652118454 7 NA NA -5.76441117578765 LTS-034 chr1 17274946 17275407 462 * CROCC NA 0 NA 1.004 1 NA NA NA NA NA LTS-034 chr1 17275408 17281235 5828 * CROCC 0.436 1 NA 1.37288152053534 19 0.42162546778832 4 4 0 -5.76441423072251 LTS-034 chr1 17281236 19233927 1952692 * c(MIR4695, PADI2, IFFO2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.455977668857805 60 0.0317508796977646 1.40141092686249 1774 0.622862979953427 4 2 2 -6.9183248371012 LTS-034 chr1 19233928 19282899 48972 * IFFO2 NA 0 NA 1.41613283181168 75 0.375938477332048 4 NA NA -5.76483955626642 LTS-034 chr1 19282900 19400993 118094 * character(0) NA 0 NA 1.123 1 NA NA NA NA NA LTS-034 chr1 19400994 19401405 412 * UBR4 0.389 1 NA 0.928251227850284 9 0.0828836198801937 3 3 0 -5.76503225883885 LTS-034 chr1 19401406 27736512 8335107 * c(MIR1976, MIR3115, MIR4253, MIR3917, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, MIR378F, RCAN3AS, CELA3A, WASF2, HNRNPR, SRRM1, CNKSR1, CD52, NUDC, RCAN3, LYPLA2, FAM46B, KDF1, CNR2, MYOM3, VWA5B1, UBXN10, ZNF436-AS1, PDIK1L, IFNLR1, FAM43B, PAQR7, DDOST, E2F2, ECE1, EPHA8, EPHB2, EXTL1, AKR7A3, KDM1A, WDTC1, EMC1, OTUD3, UBR4, CELA3B, TMEM50A, AKR7L, ALPL, FUCA1, TMCO4, ZNF683, NA NA NA NA NA NA NA NA NA LTS-034 GALE, MDS2, CLIC4, SYF2, LDLRAP1, PLA2G2D, SFN, GPR3, LOC284632, LINC00339, PLA2G2E, HMGN2, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, CATSPER4, TRNP1, CD164L2, PLA2G2C, STMN1, SH2D5, NCMAP, LDLRAD2, MINOS1, NBL1, PAFAH2, HP1BP3, ZNF593, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, GPN2, PQLC2, AIM1L, TMEM57, CAMK2N1, ASAP3, PNRC2, PIGV, MTFR1L, RSRP1, PITHD1, MAN1C1, NIPAL3, SELENON, KIF17, GRHL3, IL22RA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAP1GAP, RHCE, RHD, RPL11, RPS6KA1, GPATCH3, RPS14P3, ACTG1P20, PLA2G2F, LOC646471, CEP85, PINK1, SLC9A1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, SLC30A2, LUZP1, AUNIP, MUL1, LIN28A, FAM110D, DHDDS, ZNF436, ARID1A, CAPZB, SH3BGRL3, TMEM222, USP48, NBPF3, ZDHHC18, NR0B2, TRIM63, SYTL1, FCN3, AKR7A2, RUNX3, EIF4G3, STPG1, MAP3K6, UBXN11, CDA, ZBTB40, CDC42) 0.344312977080639 263 0.0632631258042445 1.05102366223169 12136 0.251566009308087 3 2 1 -6.77578336254425 LTS-034 NA NA NA NA LTS-034 chr1 27736513 27736616 104 * WASF2 NA 0 NA 0.81 1 NA NA NA NA NA LTS-034 chr1 27736617 29213759 1477143 * c(WASF2, GMEB1, RCC1, RAB42, FAM76A, EPB41, EYA3, FGR, DNAJC8, STX12, IFI6, RNU11, AHDC1, SMPDL3B, OPRD1, YTHDF2, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1, THEMIS2) 0.321204391784275 12 0.047801356643611 0.99058273295137 1943 0.227616313558567 3 2 1 -7.18598310806068 LTS-034 chr1 29213760 29313896 100137 * EPB41 NA 0 NA 0.851 1 NA NA NA NA NA LTS-034 chr1 29313897 29487045 173149 * c(EPB41, TMEM200B, SRSF4) 0 1 NA 0.747164604065193 208 0.240726356514478 2 2 0 -5.76535592378417 LTS-034 chr1 29487046 29508086 21041 * SRSF4 NA 0 NA 1.09 1 NA NA NA NA NA LTS-034 chr1 29508087 36215391 6707305 * c(FAM229A, MATN1-AS1, MIR4254, MIR3605, TMEM35B, MIR4420, PTPRU, KHDRBS1, SMIM12, AZIN2, TMEM54, CSMD2, GJB4, HMGB4, RNF19B, A3GALT2, C1orf216, COL16A1, DCDC2B, ZNF362, LINC01225, PHC2, TXLNA, AK2, FABP3, NCDN, KPNA6, FNDC5, GJA4, GJB3, GJB5, LINC01226, HCRTR1, HDAC1, HPCA, MTMR9LP, ZBTB8OS, TFAP2E, SERINC2, LCK, CSMD2-AS1, MATN1, MECR, ZCCHC17, BSDC1, TMEM39B, TRIM62, PEF1, IQCC, TMEM234, PSMB2, NA NA NA NA NA NA NA NA NA LTS-034 ADGRB2, KIAA1522, DLGAP3, RBBP4, CLSPN, TINAGL1, SFPQ, SRSF4, S100PBP, MARCKSL1, ZBTB8A, LOC653160, SNORD103C, SNORD103A, ZBTB8B, ZSCAN20, LAPTM5, CCDC28B, NKAIN1, ZMYM1, KIAA0319L, PTP4A2, SYNC, TSSK3, FAM167B, C1orf94, YARS, EIF3I, SPOCD1, ZMYM4, ZMYM6, SNRNP40, SDC3, PUM1) 0.37471606710557 85 0.050831379399468 1.05423385499605 6562 0.244892605938876 3 2 1 -6.78176184351318 LTS-034 NA NA NA NA LTS-034 chr1 36215392 36216926 1535 * CLSPN NA 0 NA 0.634 1 NA NA NA NA NA LTS-034 chr1 36216927 36274190 57264 * c(AGO4, CLSPN) NA 0 NA 0.670906679817867 65 0.10391433232013 2 NA NA -5.81821642904947 LTS-034 chr1 36274191 36282421 8231 * AGO4 NA 0 NA 1.18 1 NA NA NA NA NA LTS-034 chr1 36282422 43076860 6794439 * c(NFYC-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, CAP1, SF3A3, TMCO2, ZNF684, C1orf122, OSCP1, COL8A2, COL9A2, CSF3R, MANEAL, CTPS1, CITED4, EDN2, AGO3, AGO4, SLFNL1, FHL3, FOXJ3, SCMH1, MACF1, MYCBP, HEYL, AGO1, TRAPPC3, TEKT2, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, ZFP69, BMP8A, INPP5B, MIR30C1, MIR30E, MTF1, MYCL, NDUFS5, NFYC, UTP11, HPCAL4, NA NA NA NA NA NA NA NA NA LTS-034 POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, PPT1, MAP7D1, HIVEP3, RLF, OXCT2, RRAGC, KIAA0754, SMAP2, MEAF6, EXO5, MRPS15, ZFP69B, BMP8B, SNORA55, LINC01137, PPIEL, CCDC30, DNALI1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZC3H12A, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, PABPC4, KCNQ4, RIMS3, THRAP3) 0.345204347967037 115 0.0632704979553498 1.02739721628121 7530 0.240600237830298 3 2 1 -6.83072260856059 LTS-034 NA NA NA NA LTS-034 chr1 43076861 43102917 26057 * CCDC30 NA 0 NA 0.757 1 NA NA NA NA NA LTS-034 chr1 43102918 43166780 63863 * c(PPIH, YBX1, CCDC30) NA 0 NA 0.754902587520869 113 0.136124190921314 2 NA NA -5.76474192809459 LTS-034 chr1 43166781 43199065 32285 * c(CLDN19, YBX1) NA 0 NA 1.296 1 NA NA NA NA NA LTS-034 chr1 43199066 54387377 11188312 * c(LOC100129924, EFCAB14-AS1, KDM4A-AS1, MIR761, MKNK1-AS1, LOC100507564, MIR5584, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, EBNA1BP2, KIF2C, FAF1, MED8, KTI12, TOE1, ERMAP, OSBPL9, PLK3, CCDC163, DMBX1, PODN, KLF17, TMEM125, CPT2, KNCN, MOB3C, GLIS1, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, SLC25A3P1, DIO1, DPH2, ELAVL4, CYP4Z1, SLC5A9, CC2D1B, EPS15, NA NA NA NA NA NA NA NA NA LTS-034 FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, SZT2, MMACHC, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, GPX7, C1orf228, TCTEX1D4, FAM159A, IPP, SVBP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MAGOH, MPL, SLC2A1-AS1, FAM183A, ZYG11A, MUTYH, NASP, NRDC, ORC1, PRDX1, ZNF691, TXNDC12, TMEM69, HSPB11, CMPK1, ATP6V0B, LURAP1, YIPF1, SPATA6, C1orf123, RNF220, ECHDC2, POMGNT1, NDC1, DMAP1, ZSWIM5, PTPRF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAB3B, GPBP1L1, RPS8, SCP2, DMRTB1, DMRTA2, P3H1, ATPAF1, ELOVL1, ST3GAL3, STIL, SLC1A7, SLC2A1, COA7, SLC6A9, TAL1, TIE1, RPS15AP10, FAAHP1, UQCRH, UROD, LRP8, ERI3, C1orf50, TMEM53, HECTD3, BEND5, ZYG11B, HYI, RAD54L, FOXD2-AS1, HPDL, AGBL4, PRPF38A, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, BTF3L4, ZFYVE9, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14, CDC20) 0.344365484136465 180 0.0559253767565595 1.06529800355967 11532 0.239447902693185 3 2 1 -6.78603342854329 LTS-034 NA NA NA NA LTS-034 chr1 54387378 54722936 335559 * c(MIR4781, LRRC42, TCEANC2, CDCP2, SSBP3, LDLRAD1, MRPL37, HSPB11, CYB5RL, TMEM59) 0.28314843676631 9 0.0461305514575512 1.32823625327854 545 0.313752239528196 4 3 1 -6.73386352216331 LTS-034 chr1 54722937 65278394 10555458 * c(LINC01135, LOC100507634, MROH7-TTC4, MIR4422, MIR4794, MIR4711, PATJ, MYSM1, OMA1, C1orf87, UBE2U, CYP2J2, DAB1, LEXM, KANK4, DHCR24, LINC00466, C1orf168, TMEM61, USP24, ITGB3BP, SSBP3, PCSK9, PARS2, ACOT11, FOXD3, ANGPTL3, ALG6, FAM151A, JUN, MROH7, TACSTD2, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, TTC22, RAVER2, FGGY, PRKAA2, CACHD1, TTC4, HSD52, C8A, C8B, USP1, BSND, DLEU2L, TM2D1, EFCAB7, NA NA NA NA NA NA NA NA NA LTS-034 ATG4C, DOCK7, PLPP3) 0.351740616759392 105 0.0638685692590193 1.09298226652682 4961 0.278894727434837 3 2 1 -6.82472389469288 LTS-034 NA NA NA NA LTS-034 chr1 65278395 65278493 99 * RAVER2 NA 0 NA 1.092 1 NA NA NA NA NA LTS-034 chr1 65278494 94953309 29674816 * c(MIR760, LOC100129046, CCDC18-AS1, ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, MIR3671, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, GLMN, HHLA3, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, IL23R, GBP6, HFM1, GADD45A, DR1, TCTEX1D1, SLC44A5, AK4, CLCA4, MTF2, USP33, SLC35D1, ADGRL2, KIAA1107, NA NA NA NA NA NA NA NA NA LTS-034 LRRC8B, LPAR3, DDAH1, ABCA4, EPHX4, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, SERBP1, AK5, GBP1, GBP2, GBP3, GFI1, SNORA66, SNORD45B, SNORD45A, GCLM, GNG5, ZNF326, BTBD8, GTF2B, DNTTIP2, LINC01140, ACADM, CCDC18, BARHL2, CYR61, IL12RB2, JAK1, MIGA1, GBP7, C1orf146, FAM69A, UOX, LEPR, C1orf141, GBP1P1, FLJ27354, MIR101-1, MIR186, LHX8, LINC01555, MSH4, GEMIN8P4, RBMXL1, TMED5, TNNI3K, SH3GLB1, PDE4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PIN1P1, ZNHIT6, LEPROT, GIPC2, FNBP1L, LRRC8D, RAVER2, MCOLN3, LRRC40, DEPDC1, PRKACB, PKN2, GNG12, KYAT3, PTGER3, PTGFR, ODF2L, LRRC7, MIER1, ABCD3, DNASE2B, RABGGTB, SNORD21, RPE65, RPL5, ADGRL4, LOC646626, BRDT, SNORD45C, TGFBR3, LOC729930, EVI5, TTLL7, WDR78, RPAP2, WLS, RPF1, ANKRD13C, ST6GALNAC5, CDC7, BCAR3, SYDE2, ZNF644, LRRC8C, SGIP1, LMO4, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZRANB2, ARHGAP29, CLCA3P, CLCA2, HS2ST1, DNAJC6) 0.345057214797965 266 0.0694216752067321 1.03974406908778 14370 0.276227780467626 3 2 1 -6.8385991476649 LTS-034 NA NA NA NA LTS-034 chr1 94953310 95615770 662461 * c(TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, ABCD3, LOC729970) 0.267028389372726 7 0.0297457479954619 1.28383431623668 342 0.289308291286611 4 3 1 -6.90393432559558 LTS-034 chr1 95615771 95615776 6 * c(TMEM56-RWDD3, TMEM56) NA 0 NA 1.099 1 NA NA NA NA NA LTS-034 chr1 95615777 120536724 24920948 * c(MIR942, LINC01349, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, OLFM3, MAB21L3, ATXN7L2, C1orf194, LRRC39, HSD3BP4, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, NA NA NA NA NA NA NA NA NA LTS-034 DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, S1PR1, CELSR2, SPAG17, HIPK1, EXTL2, NTNG1, WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, HAO2, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, GDAP2, FAM46C, PALMD, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, PTBP2, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, MFSD14A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, MIR553, TSHB, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, RTCA, ZNF697, SLC16A4, CD2, CD101, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.349836664973984 303 0.0541162075473313 1.03454815407349 15514 0.324367357207629 3 2 1 -6.83142430564762 LTS-034 NA NA NA NA LTS-034 chr1 120536725 121116733 580009 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.325758630185091 10 0.0825704413078783 0.86168205228093 141 0.190394350262699 3 2 1 -7.21886734053652 LTS-034 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 0.908256500211697 59 0.256098815217972 3 NA NA -5.80649798376538 LTS-034 chr1 143912360 144013853 101494 * FAM72D 0.339 1 NA 0.609388459879996 5 0.325339514968594 2 2 0 -5.7938588846392 LTS-034 chr1 144013854 145283435 1269582 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.362836548170751 82 0.0939454096161991 0.964635489421137 710 0.270755161517246 3 2 1 -6.82238340816045 LTS-034 chr1 145283436 151259074 5975639 * c(NBPF10, FCGR1CP, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, CD160, VPS45, GABPB2, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, NOTCH2NL, LINC01138, LOC388692, LYSMD1, ARNT, MCL1, NA NA NA NA NA NA NA NA NA LTS-034 HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, PDZK1, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, OTUD7B, PSMD4, LINC00869, ZNF687, PRUNE1, BCL9, NBPF13P, PPIAL4D, LOC645166, GPR89A, HIST2H3D, VPS72, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, PRPF3, CHD1L, SETDB1, SV2A, RBM8A NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ) 0.349011918187388 64 0.0596669326942726 1.02876511973785 5788 0.314296944657331 3 2 1 -6.78471939190742 LTS-034 NA NA NA NA LTS-034 chr1 151259075 151384286 125212 * c(POGZ, PI4KB, PSMB4, ZNF687, RFX5, SELENBP1) 0.435372785685356 3 0.0251462389500564 1.32208976168684 526 0.727050344713461 4 2 2 -6.74090935865509 LTS-034 chr1 151384287 151384720 434 * POGZ NA 0 NA 1.087 1 NA NA NA NA NA LTS-034 chr1 151384721 152760544 1375824 * c(C1orf68, LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, TCHHL1, RPTN, LCE4A, FLG, POGZ, LCE5A, LCE2B, RIIAD1, THEM5, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, KPRP, CRNN, OAZ3, CRCT1, CGN, RORC, S100A10, S100A11, MRPL9, MIR554, TCHH, TUFT1, SNX27, LCE3D) 0.338617114029431 63 0.0514939484610629 1.08603150621778 2042 0.275294669864487 3 2 1 -6.84517678589011 LTS-034 chr1 152760545 152777462 16918 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 1.89794161274172 42 0.858445006210399 6 NA NA -5.76441735446985 LTS-034 chr1 152777463 154099894 1322432 * c(JTB, SLC27A3, PGLYRP3, S100A16, CREB3L4, LELP1, SPRR4, CRTC2, SNAPIN, CHTOP, SLC39A1, S100A7A, LCE1A, LCE1B, LCE1C, ILF2, IVL, LOR, SMCP, LCE6A, NPR1, PGLYRP4, S100A14, PRR9, GATAD2B, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, NUP210L, DENND4B NA NA NA NA NA NA NA NA NA LTS-034 ) 0.352453264779769 25 0.0392289433964261 1.04644518079715 2197 0.271253632858721 3 2 1 -6.75884408642396 LTS-034 NA NA NA NA LTS-034 chr1 154099895 154101744 1850 * NUP210L NA 0 NA 1.284 1 NA NA NA NA NA LTS-034 chr1 154101745 154295570 193826 * c(MIR190B, HAX1, C1orf43, C1orf189, TPM3, AQP10, NUP210L, UBAP2L) 0.28913218266376 3 0.0221208800307161 1.35070110829169 481 0.266447607296753 4 3 1 -6.78673207252267 LTS-034 chr1 154295571 157069621 2774051 * c(MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, C1orf61, PMVK, FAM189B, NES, PMF1, GLMP, CHRNB2, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, DCST1, LRRC71, TTC24, EFNA1, EFNA3, EFNA4, KRTCAP2, FDPS, KIAA0907, SYT11, SMG5, RUSC1, GBA, GBAP1, RUSC1-AS1, LAMTOR2, HDGF, RXFP4, IL6R, INSRR, PEAR1, KCNN3, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, MTX1, MUC1, NTRK1, ZBTB7B, RRNAD1, NA NA NA NA NA NA NA NA NA LTS-034 PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, RHBG, ATP8B2, PBXIP1, HCN3, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, SHC1, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, ISG20L2, TMEM79, ADAM15, AQP10, SH2D2A, PYGO2, ARHGEF2, MEX3A, SLC25A44, ARHGEF11) 0.353875805038697 64 0.0469094423728332 1.04955812978917 7603 0.220271928480651 3 2 1 -6.74716774239097 LTS-034 NA NA NA NA LTS-034 chr1 157069622 157090995 21374 * character(0) NA 0 NA 2.112 1 NA NA NA NA NA LTS-034 chr1 157090996 157103319 12324 * c(ETV3, CYCSP52) NA 0 NA 1.40353065149847 102 0.245398995627408 4 NA NA -5.76457379735247 LTS-034 chr1 157103320 158533457 1430138 * c(FCRL1, FCRL3, OR10T2, OR6P1, ETV3, OR10R2, OR10K2, OR10K1, OR6Y1, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L) 0.323532506001063 27 0.122300177159861 1.12630958634612 1320 0.293798654013227 3 2 1 -6.82462780919227 LTS-034 chr1 158533458 158548620 15163 * character(0) NA 0 NA 1.002 1 NA NA NA NA NA LTS-034 chr1 158548621 161561213 3012593 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, NA NA NA NA NA NA NA NA NA LTS-034 ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.34083071157847 119 0.0808397291840858 1.04791697372723 5410 0.281861494148383 3 2 1 -6.77032313843001 LTS-034 NA NA NA NA LTS-034 chr1 161561214 161561345 132 * FCGR2C NA 0 NA 0.695 1 NA NA NA NA NA LTS-034 chr1 161561346 161570525 9180 * FCGR2C 0.283521341455212 2 0.0799030662740799 0.597837613409029 48 0.308333843204485 4 3 1 -6.77154349230549 LTS-034 chr1 161570526 161596212 25687 * c(FCGR3B, HSPA7, FCGR2C) 0.306 1 NA 0.966785069864848 88 0.156131284681919 3 3 0 -5.76963867944391 LTS-034 chr1 161596213 161599529 3317 * FCGR3B NA 0 NA 0.245 1 NA NA NA NA NA LTS-034 chr1 161599530 161643044 43515 * c(FCGR2B, FCGR3B) NA 0 NA 0.628260119129888 41 0.368398188933871 2 NA NA -5.77181398405972 LTS-034 chr1 161643045 161643176 132 * FCGR2B NA 0 NA 1.718 1 NA NA NA NA NA LTS-034 chr1 161643177 172062077 10418901 * c(MIR921, MIR1295A, MIR3119-1, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, MYOC, ATP1B1, NA NA NA NA NA NA NA NA NA LTS-034 DDR2, PBX1, HSD17B7, METTL13, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.356050183058565 142 0.0526052863525382 1.04562312111302 6770 0.254694220957162 3 2 1 -6.75229687167864 LTS-034 NA NA NA NA LTS-034 chr1 172062078 172062806 729 * DNM3 NA 0 NA 1.177 1 NA NA NA NA NA LTS-034 chr1 172062807 173010085 947279 * c(MIR3120, DNM3OS, DNM3, FASLG, SUCO, PIGC, C1orf105) 0.277560453994317 14 0.0399494185684353 1.27631011602889 632 0.474437257546529 4 3 1 -6.75076364814034 LTS-034 chr1 173010086 175332908 2322823 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, SERPINC1, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.357464428446334 10 0.051853318762319 1.00138361719236 1653 0.221358072716823 3 2 1 -6.82224355805287 LTS-034 chr1 175332909 178888706 3555798 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.336858945654916 44 0.0416571377405569 1.12941281341194 1608 0.43254688804637 3 2 1 -6.96531635301232 LTS-034 chr1 178888707 182993236 4104530 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, TOR1AIP1, ABL2, GLUL, LOC284648, MR1, RGSL1, LINC00272, LAMC1, IER5, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, TOR3A, SOAT1, CACNA1E, NPHS2, NPL, SHCBP1L, ACBD6, RGS8, LHX4, XPR1, CEP350, FAM20B) 0.338013016066176 106 0.0693949599553581 1.0527652254618 4171 0.250853994501386 3 2 1 -6.79595406978044 LTS-034 chr1 182993237 183274019 280783 * c(NMNAT2, LAMC1, LAMC2) 0.441117004978813 9 0.0325375851046823 1.48016443675817 536 0.407797614171547 4 2 2 -6.74584479762147 LTS-034 chr1 183274020 183387313 113294 * NMNAT2 NA 0 NA 0.787 1 NA NA NA NA NA LTS-034 chr1 183387314 190250883 6863570 * c(GS1-279B7.1, MIR548F1, RNU6-72P, ARPC5, PRG4, IVNS1ABP, OCLM, TSEN15, FAM129A, NMNAT2, COLGALT2, RGL1, SMG7-AS1, BRINP3, APOBEC4, NCF2, PDC, PLA2G4A, SWT1, C1orf27, PTGS2, RNF2, TPR, EDEM3, C1orf21, TRMT1L, HMCN1, SMG7) 0.35147343255908 40 0.051702644628089 1.05473988948843 3119 0.254606519914666 3 2 1 -6.75169619302913 LTS-034 chr1 190250884 199996742 9745859 * c(MIR181A1HG, MIR1278, MIR4735, CFHR4, CFHR3, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFH, CFHR1, CFHR2, BRINP3, KCNT2, ZBTB41, C1orf53, MIR181B1, MIR181A1, RGS21, LOC440704, GLRX2, UCHL5, LHX9, PTPRC, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, CFHR5, B3GALT2) 0.369359478272976 41 0.0817560246157775 0.979320765441077 2715 0.269339587204539 3 2 1 -7.195551075435 LTS-034 chr1 199996743 200183422 186680 * NR5A2 0.32835424622202 3 0.0480728613668877 0.735671261928409 154 0.221861380885284 3 2 1 -7.27549430723867 LTS-034 chr1 200183423 200311665 128243 * character(0) NA 0 NA 1.004 1 NA NA NA NA NA LTS-034 chr1 200311666 201932890 1621225 * c(MIR1231, MIR5191, TIMM17A, CSRP1, SHISA4, KIF21B, CAMSAP2, ZNF281, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, LINC00862, IPO9, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, DDX59, NAV1, IGFN1, KIF14) 0.358643200809614 78 0.0493088444182394 1.0911124243781 2688 0.316874517256774 3 2 1 -6.74246653813932 LTS-034 chr1 201932891 201934532 1642 * TIMM17A NA 0 NA 0.545 1 NA NA NA NA NA LTS-034 chr1 201934533 202092214 157682 * c(TIMM17A, ELF3, RNPEP, GPR37L1) NA 0 NA 0.796517014383266 244 0.301299141083847 2 NA NA -5.76616085251103 LTS-034 chr1 202092215 203317486 1225272 * c(PCAT6, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, ADORA1, LOC148709, PTPRVP, FMOD, UBE2T, NA, MYBPH, MYOG, PPP1R12B, ADIPOR1, CYB5R1, PTPN7, RABIF, KLHL12, LGR6, MGAT4EP, LINC01136, BTG2, PPFIA4, TMEM183A, GPR37L1) 0.361020847487471 42 0.0607792840571475 1.05793640286845 2173 0.234286469368913 3 2 1 -6.73310975512511 LTS-034 chr1 203317487 203452215 134729 * c(FMOD, PRELP) NA 0 NA 1.426 1 NA NA NA NA NA LTS-034 chr1 203452216 203667403 215188 * c(OPTC, ATP2B4, PRELP) NA 0 NA 1.38024384233393 157 0.302364110576995 4 NA NA -5.76496261194977 LTS-034 chr1 203667404 203667406 3 * ATP2B4 NA 0 NA 1.144 1 NA NA NA NA NA LTS-034 chr1 203667407 204591237 923831 * c(ZBED6, LRRN2, LINC00628, GOLT1A, PLEKHA6, LINC00303, KISS1, MDM4, ATP2B4, PIK3C2B, LAX1, ETNK2, REN, SNRPE, SNORA77, LINC00260, PPP1R15B, SOX13, ZC3H11A) 0.356794036574336 33 0.045578416443033 1.0699080967956 1636 0.235917215759691 3 2 1 -6.73778376598124 LTS-034 chr1 204591238 204591278 41 * c(LRRN2, MDM4) NA 0 NA 1.239 1 NA NA NA NA NA LTS-034 chr1 204591279 205156907 565629 * c(LRRN2, NFASC, DSTYK, TMEM81, MDM4, RBBP5, CNTN2) 0.23541156267023 13 0.0732791466471419 1.40375587498492 878 0.296286039461643 5 4 1 -6.83183805216004 LTS-034 chr1 205156908 205180420 23513 * DSTYK NA 0 NA 0.987 1 NA NA NA NA NA LTS-034 chr1 205180421 214507653 9327233 * c(MIR4260, MIR3122, LINC00538, IL24, SLC26A9, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, MFSD4A, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELK4, SRGAP2, SLC41A1, SYT14, DSTYK, INTS7, NSL1, RPS6KC1, DIEXF, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, C1orf186, MIR135B, ATF3, NEK2, G0S2, IL20, CDK18, DTL, PFKFB2, PIGR, PLXNA2, NA NA NA NA NA NA NA NA NA LTS-034 KLHDC8A, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, SLC30A1, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00467, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, LEMD1, CD34, IKBKE, TMCC2, LPGAT1) 0.359671695319059 110 0.0555403699475579 1.03631168384641 7267 0.227831234573869 3 2 1 -6.78270165489374 LTS-034 NA NA NA NA LTS-034 chr1 214507654 214509953 2300 * SMYD2 NA 0 NA 1.273 1 NA NA NA NA NA LTS-034 chr1 214509954 216741489 2231536 * c(CENPF, ESRRG, KCNK2, KCTD3, SMYD2, PTPN14, USH2A) 0.351451973567943 13 0.0430223555482853 1.11723747024589 1271 0.262553814034391 3 2 1 -6.81408600501756 LTS-034 chr1 216741490 219783279 3041790 * c(LINC00210, LYPLAL1, SPATA17, ESRRG, RRP15, GPATCH2, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.345311647764473 4 0.0959947915253739 1.45985089384588 650 0.397046061112582 4 3 1 -7.04550297331292 LTS-034 chr1 219783280 219785368 2089 * character(0) NA 0 NA 1.68438483835154 31 0.536234920834685 5 NA NA -5.76441226429769 LTS-034 chr1 219785369 219785370 2 * character(0) NA 0 NA 0.995 1 NA NA NA NA NA LTS-034 chr1 219785371 220156704 371334 * c(EPRS, RNU5F-1, SLC30A10) 0.433 1 NA 1.2873651557082 99 0.235488510526483 4 4 0 -5.77439063412195 LTS-034 chr1 220156705 225454424 5297720 * c(MIR320B2, MIR4742, BPNT1, DUSP10, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, IARS2, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.447161840495269 48 0.0505283739894149 1.30505569675765 3410 0.290147896819362 4 2 2 -6.80083674752092 LTS-034 chr1 225454425 226352438 898014 * c(LEFTY1, DNAH14, SDE2, EPHX1, PYCR2, H3F3A, LBR, H3F3AP4, ENAH, ACBD3, SRP9, LEFTY2, TMEM63A) 0.406984820409896 12 0.0498022605060769 1.58806382507987 1070 0.369663308447434 5 3 2 -6.73857375300979 LTS-034 chr1 226352439 226352498 60 * ACBD3 0.258 1 NA 0.817 1 NA NA NA NA NA LTS-034 chr1 226352499 235667742 9315244 * c(NA, LINC00582, MIR1182, LINC00184, TSNAX-DISC1, MIR3620, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, MIR5008, SPHAR, CAPN9, SNAP47, CCSAP, C1orf131, MRPL55, HIST3H2BB, PARP1, SLC35F3, B3GALNT2, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, RBM34, ABCB10, GALNT2, TAF5L, DISC2, DISC1, LIN9, GUK1, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, STUM, FAM89A, KCNK1, COA6, ZNF847P, TRIM67, TRIM17, ARID4B, NA NA NA NA NA NA NA NA NA LTS-034 EGLN1, MAP10, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ACBD3, ARV1, JMJD4, SNORA14B, TARBP1, TBCE, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, WNT3A, HIST3H2A, GGPS1, TOMM20, URB2) 0.45733860916635 205 0.0332693369409101 1.31108336571966 7714 0.29476951739745 4 2 2 -6.98812989016916 LTS-034 NA NA NA NA LTS-034 chr1 235667743 235714162 46420 * c(B3GALNT2, GNG4) 0.5 1 NA 1.32868561499315 5 0.183938304874216 4 4 0 -5.76468550353834 LTS-034 chr1 235714163 245222858 9508696 * c(AKT3, LOC100130331, LGALS8-AS1, MIR1537, MIR3123, MIR4677, ZBTB18, SDCCAG8, CHML, LYST, CHRM3, COX20, WDR64, EDARADD, ADSS, PLD5, C1orf100, FH, OPN3, C1orf101, GNG4, NA, HNRNPU, LOC339529, LINC01139, LGALS8, MAP1LC3C, MTR, NID1, DESI2, HEATR1, ERO1B, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, GPR137B, LINC01347, EFCAB2, KMO, ACTN2, EXO1, CEP170) 0.449337602269886 102 0.0549235574739921 1.30049156738137 4815 0.35685827797741 4 2 2 -6.82733934617907 LTS-034 chr1 245222859 245245262 22404 * EFCAB2 NA 0 NA 1.455 1 NA NA NA NA NA LTS-034 chr1 245245263 248129689 2884427 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, LINC01341, CNST, LOC255654, TRIM58, AHCTF1, OR1C1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, C1orf229, OR11L1, OR2L8, OR2AK2, OR2W5, OR13G1, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, ZNF124, ZNF669, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670) 0.461643195046964 85 0.0336909998870523 1.37255386446674 2142 0.444321629006909 4 2 2 -7.01112924959788 LTS-034 chr1 248129690 248224569 94880 * c(OR2L2, OR2L1P, OR2L13, OR2L3, OR2L5) 0.208 1 NA 1.48080027373975 68 0.270685367247922 4 4 0 -5.77071111455263 LTS-034 chr1 248224570 248616541 391972 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, OR2M4, OR2T1, OR2L13, OR2M1P, OR2L3, OR2M2, OR2T33, OR2M7, OR2T2) 0.341426358937491 5 0.158926712669708 1.33419215403067 258 0.389517926111061 4 3 1 -6.81475322990031 LTS-034 chr1 248616542 248637356 20815 * c(OR2T3, OR2T2) 0.320996783869144 4 0.100509949756231 0.642039945207695 68 0.648358962428642 7 5 2 -6.79913180937087 LTS-034 chr1 248637357 248790545 153189 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T5) 0.416674404048042 7 0.0676014229210627 1.29077565889118 128 0.363533990642364 5 3 2 -6.78898089158704 LTS-034 chr1 248790546 248801482 10937 * character(0) NA 0 NA 8.11 1 NA NA NA NA NA LTS-034 chr1 248801483 248813546 12064 * c(OR2T27, OR2T35) 0.378948228147581 8 0.122754982441796 2.45926744830955 45 8.05312328061152 16 10 6 -6.7331090857858 LTS-034 chr1 248813547 248813597 51 * OR2T27 NA 0 NA 1.016 1 NA NA NA NA NA LTS-034 chr1 248813598 248814126 529 * OR2T27 0.18 1 NA 0.696973702300284 19 0.360057589610686 2 2 0 -5.76443104693937 LTS-034 chr1 248814127 249214134 400008 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) NA 0 NA 1.2566230001027 323 0.281191623918223 4 NA NA -5.78100942336807 LTS-034 chr2 38824 38938 115 * FAM110C 0.328 1 NA 0.913086698914989 3 0.398190908987134 3 3 0 -5.76441959988626 LTS-034 chr2 38939 26101411 26062473 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, NA NA NA NA NA NA NA NA NA LTS-034 HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, ACP1, SNTG2, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, FAM110C, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TPO, TSSC1, LINC01249, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAD51AP2, DNAJC27-AS1, MYT1L-AS1, VSNL1, PXDN, COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.355191889979849 291 0.0678942879818448 1.03533798063365 10774 0.248495388376183 3 2 1 -6.86175548035775 LTS-034 NA NA NA NA LTS-034 chr2 26101412 26149429 48018 * character(0) NA 0 NA 1.378 1 NA NA NA NA NA LTS-034 chr2 26149430 26204790 55361 * KIF3C 0.460876299339308 5 0.0230716275975493 1.36211959704522 126 0.205388376203146 4 2 2 -7.26118259227164 LTS-034 chr2 26204791 26204901 111 * KIF3C NA 0 NA 0.94 1 NA NA NA NA NA LTS-034 chr2 26204902 27716945 1512044 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, RAB10, EMILIN1, CIB4, ZNF513, TCF23, GAREM2, ADGRF3, KRTCAP3, MAPRE3, FTH1P3, IFT172, DNAJC5G, GTF3C2, NRBP1, HADHA, HADHB, C2orf70, PRR30, KCNK3, KHK, KIF3C, MPV17, ATRAID, TMEM214, PPM1G, SLC35F6, DPYSL5, TRIM54, AGBL5, FNDC4, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17) 0.354807215545512 31 0.0336150248025064 1.07964277276409 3680 0.222202598372032 3 2 1 -6.75632109692595 LTS-034 chr2 27716946 27717137 192 * FNDC4 NA 0 NA 0.969 1 NA NA NA NA NA LTS-034 chr2 27717138 30791112 3073975 * c(BRE-AS1, MIR4263, LOC100505716, GPN1, PLB1, FAM179A, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, LCLAT1, GCKR, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, CLIP4, LBH, C2orf16, ZNF512, MRPL33, BRE, SUPT7L) 0.358933226411148 23 0.0583506166754316 1.01993754308772 2603 0.222934309005948 3 2 1 -6.78501873918227 LTS-034 chr2 30791113 30828834 37722 * LCLAT1 NA 0 NA 1.395 1 NA NA NA NA NA LTS-034 chr2 30828835 30865083 36249 * LCLAT1 NA 0 NA 1.4713219707224 60 0.274911768074756 4 NA NA -5.76642458502028 LTS-034 chr2 30865084 55277700 24412617 * c(SLC8A1-AS1, LINC01126, LINC01119, ARHGEF33, LOC100271832, LOC100288911, MIR3682, CEBPZOS, MIR4765, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, GPR75, GTF2A1L, STON1, PPP1R21, C2orf73, PLEKHH2, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, OXER1, KCNG3, EPAS1, PSME4, RHOQ, HAAO, PRKD3, FSHR, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, ERLEC1, EML4, LINC00486, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, MSH6, EHD3, NA NA NA NA NA NA NA NA NA LTS-034 FOXN2, CDKL4, LOC375196, LOC388942, TMEM247, LINC01118, TSPYL6, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LTBP1, EPCAM, CAPN14, MSH2, CHAC2, MEMO1, ASB3, CRIM1, DYNC2LI1, VIT, PIGF, HEATR5B, PPM1B, SRBD1, NDUFAF7, TTC27, SLC30A6, PRKCE, EIF2AK2, KCNK12, RPL23AP32, RTN4, TTC7A, BIRC6, MTA3, NLRC4, THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR558, MIR559, LOC728730, C1GALT1C1L, MORN2, XDH, GALNT14, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, YIPF4, DPY30, MAP4K3, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, CAPN13, HNRNPLL, NRXN1, CRIPT, PREPL, FEZ2, SOCS5, ACYP2) 0.362666787211914 194 0.0599695193485384 1.0340575874945 12250 0.488443024863364 3 2 1 -6.76823135662373 LTS-034 NA NA NA NA LTS-034 chr2 55277701 55402809 125109 * c(CLHC1, RTN4) NA 0 NA 1.302 1 NA NA NA NA NA LTS-034 chr2 55402810 55831247 428438 * c(CFAP36, CLHC1, PRORSD1P, MTIF2, CCDC88A, PPP4R3B, RPS27A) NA 0 NA 1.31449944224365 583 0.304816112592166 4 NA NA -5.76673993559763 LTS-034 chr2 55831248 55842504 11257 * PPP4R3B NA 0 NA 1.091 1 NA NA NA NA NA LTS-034 chr2 55842505 85843348 30000844 * c(SNORA36C, SNORA70B, MIR216B, LOC100132215, LOC100133985, DBIL5P2, SNAR-H, DCTN1-AS1, MIR4264, MIR3126, BOLA3-AS1, INO80B-WBP1, MIR4434, MIR4778, MIR4432, PARTICL, MIR5000, MIR5192, ACTR2, MPHOSPH10, SMYD5, C1D, SEMA4F, CCT7, CCT4, STAMBP, TGOLN2, B3GNT2, USP39, VAMP5, MTHFD2, PROKR1, SNRNP27, TEX261, CCDC85A, WDR92, MRPL53, ADD2, TRABD2A, TMEM150A, REG3G, AHSA2, M1AP, CTNNA2, COMMD1, FBXO41, PUS10, LINC00309, NA NA NA NA NA NA NA NA NA LTS-034 ASPRV1, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, GKN2, APLF, TMEM17, SPRED2, EMX1, EFEMP1, AAK1, CEP68, EXOC6B, EHBP1, WBP1, VAX2, CNRIP1, RAB11FIP5, GFPT1, GGCX, NFU1, BMP10, ZNF638, HTRA2, SH2D6, LGALSL, ANXA4, HK2, TLX2, LOC339803, C2orf74, LOC339807, FIGLA, NOTO, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, LINC01122, LINC01185, LOC400958, PCBP1-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PAIP2B, MIR216A, MIR217, MXD1, MAT2A, MDH1, MEIS1, OTX1, CD207, REG3A, PCBP1, TPRKB, WDPCP, RNF181, PCYOX1, VPS54, PEX13, ATP6V1B1, BCL11A, PLEK, ETAA1, AFTPH, RETSAT, C2orf42, AUP1, FANCL, MOB1A, PPP3R1, FBXO48, NAGK, GKN1, CYP26B1, POLE4, KCMF1, PNO1, PELI1, PPP4R3B, SLC4A5, RAB1A, REL, REG1A, REG1B, REG1CP, RTKN, GMCL1, TTC31, LOC644838, PAPOLG, SLC1A4, SNRPG, SPR, TACR1, GCFC2, TGFA, TIA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ACTG2, MEIS1-AS3, UGP2, VRK2, XPO1, ALMS1, MOGS, OR7E91P, ANKRD53, LRRTM4, CAPG, DYSF, TCF7L1, INO80B, WDR54, FAM161A, EVA1A, ANTXR1, ELMOD3, PRADC1, DUSP11, KIAA1841, MCEE, LOXL3, PCGF1, CCDC142, FAM136A, LBX2, VAMP8, PNPT1, SUCLG1, NAT8, TMSB10, SFXN5, USP34, SERTAD2, MRPL19, ARHGAP25) 0.354018653377264 231 0.0552961004401288 1.0334691758345 14450 0.248119206180642 3 2 1 -6.90851981136627 LTS-034 NA NA NA NA LTS-034 chr2 85843349 85872187 28839 * USP39 NA 0 NA 1.00900780109227 65 0.202728888922734 3 NA NA -5.76538942217933 LTS-034 chr2 85872188 85874971 2784 * USP39 NA 0 NA 1.241 1 NA NA NA NA NA LTS-034 chr2 85874972 85890753 15782 * c(USP39, SFTPB) 0.445 1 NA 1.26675161017351 31 0.17764852335289 4 4 0 -5.76571774272207 LTS-034 chr2 85890754 86443532 552779 * c(MIR4779, GNLY, IMMT, POLR1A, LOC284950, MRPL35, PTCD3, SFTPB, REEP1, SNORD94, ATOH8, ST3GAL5, LOC90784) 0.467178801799189 27 0.0232335473141258 1.3111665766826 919 0.294943367462541 4 2 2 -7.54744741369096 LTS-034 chr2 86443533 86509477 65945 * REEP1 NA 0 NA 1.22312261259072 49 0.22995348723713 4 NA NA -5.77204437359857 LTS-034 chr2 86509478 86564460 54983 * REEP1 NA 0 NA 0.353 1 NA NA NA NA NA LTS-034 chr2 86564461 86683642 119182 * c(KDM3A, REEP1) 0.363 1 NA 1.06110398503571 37 0.28639564760479 3 3 0 -5.76441401229579 LTS-034 chr2 86683643 87085504 401862 * c(RNF103-CHMP3, CHMP3, KDM3A, RMND5A, RNF103, CD8A, CD8B) 0.342177968393982 15 0.050952078325759 1.02860063822888 550 0.247424822973928 3 2 1 -6.81183661937154 LTS-034 chr2 87085505 87092740 7236 * c(ANAPC1P1, RMND5A, CD8B) NA 0 NA 0.84 1 NA NA NA NA NA LTS-034 chr2 87092741 87426395 333655 * c(ANAPC1P1, LOC285074, RMND5A) 0.285695005744901 2 0.0261629509039022 0.752787411431408 156 0.364142747121543 4 3 1 -7.22094951291568 LTS-034 chr2 87426396 88326759 900364 * c(CYTOR, KRCC1, RMND5A) 0.42749381119626 5 0.0305401375242483 1.67767594762216 39 0.588640368247799 6 3 3 -6.83960898966908 LTS-034 chr2 88326760 88326858 99 * KRCC1 NA 0 NA 1.083 1 NA NA NA NA NA LTS-034 chr2 88326859 89597177 1270319 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, EIF2AK3) 0.350364732205816 24 0.0449018252751876 1.0585011967794 725 0.479644878230951 3 2 1 -6.7626504405721 LTS-034 chr2 89597178 89890617 293440 * character(0) NA 0 NA 1.626 1 NA NA NA NA NA LTS-034 chr2 89890618 90077910 187293 * character(0) NA 0 NA 2.15612582005335 83 2.36959469511155 7 NA NA -5.76443677150269 LTS-034 chr2 90077911 90078225 315 * character(0) NA 0 NA 0.956 1 NA NA NA NA NA LTS-034 chr2 90078226 91937761 1859536 * LOC654342 0.334656260502142 13 0.0727203107098944 1.3472763005664 118 0.513970851876154 4 3 1 -7.02704894706846 LTS-034 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.34898328851121 16 0.306527839953676 4 NA NA -5.76441124183841 LTS-034 chr2 95537183 95537622 440 * c(TEKT4, LOC442028) 0.397 1 NA 1.20042858198921 9 0.201604260316536 4 4 0 -5.76450314584519 LTS-034 chr2 95537623 99634800 4097178 * c(MIR3127, ACTR1B, ARID5A, MGAT4A, CNGA3, TRIM43, COX5B, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, UNC50, CNNM4, CNNM3, STARD7-AS1, KCNIP3, KIAA1211L, INPP4A, ANKRD36, MAL, ASTL, LOC442028, COA5, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, TSGA10, LMAN2L, ZNF514, FER1L5, NEURL3, NA NA NA NA NA NA NA NA NA LTS-034 CIAO1) 0.386600757993125 57 0.0996417737834226 1.03283370006587 4424 0.236240149239405 3 2 1 -6.80151242894572 LTS-034 NA NA NA NA LTS-034 chr2 99634801 99634945 145 * TSGA10 NA 0 NA 0.697 1 NA NA NA NA NA LTS-034 chr2 99634946 99861924 226979 * c(MITD1, C2orf15, LYG2, MRPL30, LIPT1, TSGA10) 0.450942084580119 9 0.0452440910813531 0.745254432710317 271 0.225860248438096 2 1 1 -6.78167476011713 LTS-034 chr2 99861925 128321865 28459941 * c(RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4783, MIR4782, MIR5696, ACTR3, TXNDC9, MERTK, MAP3K2, EDAR, TBC1D8, RABL2A, GPR45, RPL23AP7, NMS, LYG1, CNTNAP5, FBLN7, C2orf76, TMEM182, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, LINC01106, SEPT10, SULT1C2P1, DBI, LONRF2, CCDC138, C1QL2, FOXD4L1, CFAP221, CREG2, EN1, LINC00116, ERCC3, NA NA NA NA NA NA NA NA NA LTS-034 FHL2, CLASP1, PSD4, NIFK-AS1, LYG2, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, TFCP2L1, GYPC, CYP27C1, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INHBB, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, AFF3, LIMS1, FLJ42351, LINC01191, SULT1C3, MYO7B, NPAS2, NPHP1, INSIG2, MRPL30, REV1, MIR4435-2HG, CCDC93, POU3F3, STEAP3, ACOXL, CNOT11, IWS1, PROC, IL36G, DPP10, EPB41L5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, RGPD4-AS1, RFX8, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, UXS1, SLC35F5, TMEM177, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, IL1RL1, TGFBRAP1, MAP4K4, CHST10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 GCC2, EIF5B) 0.351701457451602 201 0.0716612723875247 1.04923272188223 11955 0.316302234764255 3 2 1 -6.75601854006002 LTS-034 NA NA NA NA LTS-034 chr2 128321866 128322841 976 * MYO7B NA 0 NA 0.72 1 NA NA NA NA NA LTS-034 chr2 128322842 128528634 205793 * c(GPR17, MYO7B, WDR33, LIMS2, SFT2D3) 0.148455368778704 2 0.0212132034355964 0.750113273077742 707 0.159826595144627 2 2 0 -7.94450836559688 LTS-034 chr2 128528635 128603864 75230 * c(POLR2D, WDR33) NA 0 NA 1.259 1 NA NA NA NA NA LTS-034 chr2 128603865 128770640 166776 * c(POLR2D, SAP130, AMMECR1L) 0.314761954746541 4 0.0375499667110372 1.07796931384992 274 0.235807699866385 4 3 1 -7.23814805992864 LTS-034 chr2 128770641 129275777 505137 * c(UGGT1, SAP130, HS6ST1) 0.233243793069346 3 0.0899462802640183 0.760461530813352 424 0.164269884311184 2 2 0 -7.62360974199049 LTS-034 chr2 130737240 131595360 858121 * c(RAB6C-AS1, CYP4F30P, FAR2P2, TUBA3E, AMER3, PTPN18, MED15P9, GPR148, FAR2P1, SMPD4, CFC1, POTEI, CFC1B, POTEJ, POTEF, MZT2B, RAB6C, CCDC115, CCDC74B, IMP4) 0.399604336914887 29 0.0951669909035453 1.04817541392802 819 0.407967925758675 3 2 1 -6.83365251359736 LTS-034 chr2 131595361 131840335 244975 * c(FAM168B, ARHGEF4) NA 0 NA 0.730158412321068 213 0.139623117480209 2 NA NA -5.78031817359441 LTS-034 chr2 131840336 131877895 37560 * c(FAM168B, PLEKHB2) NA 0 NA 1.393 1 NA NA NA NA NA LTS-034 chr2 131877896 136519537 4641642 * c(CCNT2-AS1, MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, ACMSD, LOC150776, WTH3DI, RAB3GAP1, UBXN4, R3HDM1, GPR39, C2orf27A, NCKAP5, LINC01120, NOC2LP2, MIR128-1, C2orf27B, MGAT5, LOC440910, POTEE, PLEKHB2, ANKRD30BL, MZT2A, MAP3K19, TMEM163, ZRANB3, CCNT2, CCDC74A) 0.338422778144464 34 0.0653704989963931 1.05987758344795 2037 0.230593982420809 3 2 1 -6.79993336891469 LTS-034 chr2 136519538 136527311 7774 * UBXN4 NA 0 NA 0.78 1 NA NA NA NA NA LTS-034 chr2 136527312 136743226 215915 * c(LOC100507600, DARS, UBXN4, LCT, MCM6) NA 0 NA 0.711607502477621 429 0.144226862217522 2 NA NA -5.79628340100057 LTS-034 chr2 136743227 136871917 128691 * character(0) NA 0 NA 1.089 1 NA NA NA NA NA LTS-034 chr2 136871918 138773740 1901823 * c(HNMT, CXCR4, THSD7B) 0.342562369223161 10 0.0582290496421006 1.08904492999819 353 0.27217690342079 3 2 1 -6.80074075295376 LTS-034 chr2 138773741 139330595 556855 * c(HNMT, SPOPL) 0.275570717054114 3 0.017156145643277 1.55452362760025 155 0.596942635094556 4 3 1 -6.84691262740744 LTS-034 chr2 139330596 143643113 4312518 * c(NXPH2, SPOPL, LRP1B, YY1P2, KYNU) 0.384805188031339 16 0.0511220761185094 1.13403388849872 571 0.328982368854026 3 2 1 -6.97749772334324 LTS-034 chr2 143643114 143676268 33155 * KYNU NA 0 NA 0.998 1 NA NA NA NA NA LTS-034 chr2 143676269 148602471 4926203 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.1571131264868 2 0.188090403795622 0.942932215767469 451 0.29604440555699 3 3 0 -7.24695104700957 LTS-034 chr2 148602472 164460593 15858122 * c(TANK, LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, ORC4, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, TNFAIP6, CACNB4, PKP4, TANC1, NA NA NA NA NA NA NA NA NA LTS-034 ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, CD302) 0.356971164771322 103 0.0607341938255403 1.04778313056173 7133 0.244802999958954 3 2 1 -6.7524378938372 LTS-034 NA NA NA NA LTS-034 chr2 164460594 165544333 1083740 * c(SNORA70F, COBLL1, GRB14, FIGN) 0.362648500772552 5 0.0395752447876194 1.26477165972718 371 0.368921535889462 3 2 1 -6.88220214747593 LTS-034 chr2 165544334 166247336 703003 * c(SLC38A11, COBLL1, SCN2A, SCN3A) 0.351493249612573 12 0.0583658134683153 1.08980293824704 676 0.259465741264171 3 2 1 -6.75205466213269 LTS-034 chr2 166247337 166905513 658177 * c(LOC100506124, TTC21B-AS1, GALNT3, SCN1A, SCN2A, TTC21B, CSRNP3) 0.437446021724691 4 0.0568154908453672 1.35769081451838 701 0.361016733008493 4 2 2 -6.73318066125229 LTS-034 chr2 166905514 166908218 2705 * SCN1A NA 0 NA 0.892 1 NA NA NA NA NA LTS-034 chr2 166908219 170366300 3458082 * c(MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CERS6, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN7A, SCN9A, ABCB11, B3GALT1) 0.376514878895395 38 0.0517640999956935 1.08775839658075 2017 0.337221235302031 3 2 1 -6.80405534150701 LTS-034 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.835 1 NA NA NA NA NA LTS-034 chr2 170366321 183853918 13487598 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, TTC30B, ZNF385B, KLHL23, PPP1R1C, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, FRZB, METAP1D, GAD1, GORASP2, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, NA NA NA NA NA NA NA NA NA LTS-034 HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, CWC22, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.350849379539671 167 0.0496233530321121 1.02573612817591 11176 0.263973180215283 3 2 1 -6.87014834951145 LTS-034 NA NA NA NA LTS-034 chr2 183853919 183859431 5513 * NCKAP1 NA 0 NA 1.415 1 NA NA NA NA NA LTS-034 chr2 183859432 184126050 266619 * c(NCKAP1, NUP35, DUSP19) 0.2805 2 0.021920310216783 1.32952370674763 223 0.409415982804927 4 3 1 -6.73824276143741 LTS-034 chr2 184126051 184129286 3236 * character(0) NA 0 NA 1.129 1 NA NA NA NA NA LTS-034 chr2 184129287 191548465 7419179 * c(NEMP2, MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, ANKAR, ZSWIM2, FAM171B, HIBCH, MSTN, SLC40A1, INPP1, ITGAV, FSIP2, NAB1, GULP1, PMS1, ASNSD1, MFSD6, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, C2orf88, ZNF804A, ORMDL1) 0.333380004745551 46 0.0628771557481399 1.09596002951363 3425 0.326199517949164 3 2 1 -6.89074956494346 LTS-034 chr2 191548466 191548471 6 * NAB1 NA 0 NA 0.871 1 NA NA NA NA NA LTS-034 chr2 191548472 203826788 12278317 * c(SNORD11B, LOC100130452, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, NA NA NA NA NA NA NA NA NA LTS-034 BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.349836583499378 91 0.0510889788573207 1.00441220721798 7287 0.24871504601637 3 2 1 -7.07328223346927 LTS-034 NA NA NA NA LTS-034 chr2 203826789 203880852 54064 * c(NBEAL1, CARF) 0.241 1 NA 1.47177594987454 119 0.534511963007836 4 4 0 -5.76521094307531 LTS-034 chr2 203880853 220026232 16145380 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, SLC23A3, LINC00608, GPBAR1, CYP27A1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, CFAP65, PNKD, ABCA12, SNORD51, NA NA NA NA NA NA NA NA NA LTS-034 STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, ACADL, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, CATIP, PLEKHM3, C2orf80, DYTN, VWC2L, MIR26B, MAP2, MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PRKAG3, FEV, INO80D, MREG, PECR, CYP20A1, PTH2R, MARCH4, ZDBF2, USP37, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, TMBIM1, RNF25, LINC00607, RAPH1, NBEAL1, SLC11A1, TNP1, TNS1, DIRC3, VIL1, WNT6, XRCC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF142, FZD5, SPAG16, NHEJ1, WNT10A, PLCD4, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, CD28, TTLL4) 0.347875511640753 168 0.0560198136844032 1.08424090679644 10878 0.367564160631448 3 2 1 -6.80264761326484 LTS-034 NA NA NA NA LTS-034 chr2 220026233 220050174 23942 * c(SLC23A3, CNPPD1, FAM134A, NHEJ1) 0.331844875298601 12 0.0621786283073358 1.30059744600983 261 0.324156750068227 6 4 2 -6.79537364451408 LTS-034 chr2 220050175 220071588 21414 * c(ZFAND2B, FAM134A) NA 0 NA 0.888 1 NA NA NA NA NA LTS-034 chr2 220071589 220414645 343057 * c(MIR3132, ABCB6, SPEG, TMEM198, ZFAND2B, DES, DNPEP, GMPPA, DNAJB2, RESP18, MIR153-1, ANKZF1, ASIC4, PTPRN, TUBA4A, ATG9A, GLB1L, CHPF, TUBA4B, STK16) 0.354270144216087 20 0.0482738623840447 1.06209203867989 1639 0.214621632155325 3 2 1 -6.74262332108813 LTS-034 chr2 220414646 220440515 25870 * c(TMEM198, OBSL1, INHA) 0.298187357014952 8 0.0410119756029522 1.34102918664815 231 0.283427909526148 7 5 2 -6.7898441750995 LTS-034 chr2 220440516 220462559 22044 * character(0) NA 0 NA 1.046 1 NA NA NA NA NA LTS-034 chr2 220462560 223097034 2634475 * c(MIR4268, STK11IP, EPHA4, PAX3, SLC4A3) 0.361808889715084 4 0.0508363387089721 1.09843940239011 491 0.259545912671992 3 2 1 -6.76493442168834 LTS-034 chr2 223097035 223158315 61281 * PAX3 NA 0 NA 2.373 1 NA NA NA NA NA LTS-034 chr2 223158316 223789385 631070 * c(FARSB, MOGAT1, SGPP2, CCDC140, ACSL3, PAX3) 0 1 NA 1.30433594275426 352 0.592421709697483 4 4 0 -5.76586972598596 LTS-034 chr2 223789386 223791699 2314 * ACSL3 NA 0 NA 0.769 1 NA NA NA NA NA LTS-034 chr2 223791700 230579284 6787585 * c(MIR4439, MIR5702, MIR5703, COL4A3, COL4A4, AP1S3, DAW1, ACSL3, KCNE4, AGFG1, IRS1, SERPINE2, PID1, DOCK10, C2orf83, MFF, WDFY1, NYAP2, CCL20, LOC646736, MRPL44, LOC654841, SCG2, FAM124B, TM4SF20, SPHKAP, SLC19A3, RHBDD1, CUL3, DNER) 0.331102560919518 61 0.0825331395603188 1.04376214694851 3014 0.322971739222095 3 2 1 -6.81557785931034 LTS-034 chr2 230579285 230631909 52625 * DNER NA 0 NA 1.363 1 NA NA NA NA NA LTS-034 chr2 230631910 230683243 51334 * TRIP12 0.424 1 NA 1.29319174703725 162 0.158410149056108 4 4 0 -5.76693522822953 LTS-034 chr2 230683244 230693893 10650 * TRIP12 NA 0 NA 0.998 1 NA NA NA NA NA LTS-034 chr2 230693894 231112722 418829 * c(SP140, FBXO36, SLC16A14, SP110, TRIP12) 0.451081101162287 5 0.0532043231326177 0.999620827304572 372 0.20314031126092 2 1 1 -7.17640519224137 LTS-034 chr2 231112723 231113637 915 * SP140 NA 0 NA 1.951 1 NA NA NA NA NA LTS-034 chr2 231113638 231367855 254218 * c(SP140, SP100, SP140L) 0.29831764645818 10 0.0597477103233998 1.22147924484791 347 0.314747962247258 4 3 1 -6.79097665953116 LTS-034 chr2 231367856 231368888 1033 * SP100 NA 0 NA 0.833 1 NA NA NA NA NA LTS-034 chr2 231368889 241389033 10020145 * c(PP14571, LOC100286922, MIR1471, MIR4269, UBE2F-SCLY, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, NMUR1, COPS8, CHRND, CHRNG, AGAP1, TWIST2, COL6A3, DIS3L2, SPATA3, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, TRAF3IP1, GBX2, GPC1, HTR2B, ESPNL, ECEL1P2, SPATA3-AS1, NA NA NA NA NA NA NA NA NA LTS-034 INPP5D, RBM44, KCNJ13, KLHL30, C2orf82, OR6B2, ASB18, FLJ43879, DNAJB3, NCL, NDUFA10, NEU2, NPPC, PRLH, PDE6D, SCLY, ASB1, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, HES6, ACKR3, PSMD1, PTMA, SNORD20, SAG, RAB17, LOC643387, PRR21, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, ARMC9, EFHD1, ILKAP, ITM2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MGC16025, DGKD, PER2, LRRFIP1, GPR55, B3GNT7, ECEL1, EIF4E2, HDAC4) 0.346263557628939 196 0.0759031613345295 1.04113408598682 7898 0.321148462018002 3 2 1 -6.77025446123739 LTS-034 NA NA NA NA LTS-034 chr2 241389034 241439532 50499 * c(PP14571, GPC1, MIR149, ANKMY1) 0.269654835305158 2 0.0325269119345812 1.37673660629072 169 0.366432278340418 8 6 2 -6.81842638477799 LTS-034 chr2 241439533 241439863 331 * ANKMY1 NA 0 NA 1.047 1 NA NA NA NA NA LTS-034 chr2 241439864 242814463 1374600 * c(BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.355393022330208 91 0.0628402241632998 1.06681720576693 3118 0.709467355608457 3 2 1 -6.73687664015874 LTS-034 chr2 242814464 243037218 222755 * c(RTP5, LOC728323) NA 0 NA 1.04425403074548 69 0.312093341202898 3 NA NA -5.76467516742355 LTS-034 chr3 239351 361508 122158 * CHL1 0.322 1 NA 1.09593628637162 9 0.104379116685283 3 3 0 -5.77236420808132 LTS-034 chr3 361509 49978110 49616602 * c(MIR885, EGOT, GHRLOS, ACVR2B-AS1, NRADDP, MKRN2OS, LOC100132146, FGD5P1, BSN-AS2, PDCD6IP, PRSS46, LMCD1-AS1, SRGAP3-AS3, MIR1226, MIR711, MIR4270, MIR4271, MIR3714, FGD5-AS1, SH3BP5-AS1, KRBOX1, BHLHE40-AS1, ARPC4-TTLL3, MIR4793, MIR4791, MIR4790, MIR548AC, MIR4443, MIR4792, MIR4442, MIR5193, SNRK-AS1, CNTN4-AS2, SGO1-AS1, PRRT3-AS1, SLC6A1-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ARPC4, ZNF197, RBM6, NME6, CTDSPL, NA NA NA NA NA NA NA NA NA LTS-034 EIF1B, TRAIP, ARIH2, TADA3, CRTAP, ATG7, CXCR6, CSPG5, CHL1, ARPP21, CCR9, USP19, WDR6, CMTM7, TREX1, SCN11A, OSBPL10, ZNF501, FANCD2OS, LRRC3B, GALNT15, CCR1, CCR3, CCR4, CCR5, CCR8, ACKR2, COL7A1, KCNH8, LYZL4, KLHL40, TRIM71, CHCHD4, TMEM42, METTL6, TAMM41, IL17RE, CTNNB1, SGO1, PP2D1, EFHB, CPNE9, CCDC12, LINC00691, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, FGD5, CIDECP, CNTN4, CX3CR1, CYP8B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DAG1, DAZL, XIRP1, CELSR3, TTC21A, KLHDC8B, STT3B, FANCD2, FBLN2, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, CAND2, CLASP2, GPD1L, RFTN1, NBEAL2, NUP210, PLCL2, ANKRD28, KLHL18, LARS2, CAPN7, MKRN2, ZNF620, FBXL2, CNOT10, TMEM158, NDUFAF3, THUMPD3, ALS2CL, TMIE, MYRIP, PTPN23, HIGD1A, SUSD5, HACL1, TTLL3, GLB1, CNTN6, LSM3, RBMS3, AMT, GOLGA4, XCR1, NKIRAS1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LINC00692, TCAIM, ZNF660, KIF9-AS1, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, DPH3, GPX1, SETD2, PRSS50, GRM7, GMPPB, LINC00312, LMCD1, ACAA1, HRH1, APEH, CCDC36, LOC339862, C3orf35, GADL1, PRSS42, ZNF860, COL6A4P1, TPRXL, ZNF445, IL5RA, IMPDH2, IRAK2, ITGA9, ITPR1, LHFPL4, TOPAZ1, C3orf62, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, LAMB2, VENTXP7, RPSA, LOC401052, LTF, MIR128-2, MIR138-1, MIR191, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR26A1, MAP4, MLH1, MOBP, THUMPD3-AS1, EIF1B-AS1, TMEM89, MST1, MST1R, MYD88, MYL3, NKTR, ATP2B2, MIR425, OGG1, OXTR, VILL, SSUH2, TRNT1, ABHD5, DYNC1LI1, CRBN, SS18L2, CCDC174, SHISA5, ZDHHC3, TMA7, ZNF589, IP6K2, NCKIPSD, GHRL, PFKFB4, PLCD1, PLXNB1, LZTFL1, PPARG, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, CMTM6, SLC25A38, ULK4, OXSM, ANO10, DALRD3, ARL8B, SETD5, TMEM40, PRKAR2A, NGLY1, EMC3, BRK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZKSCAN7, RAD18, KIF15, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, LRRN1, QARS, RAB5A, RAF1, RARB, SNORA62, RPL15, RPL32, SATB1, SCN5A, SCN10A, RNF123, CIDEC, SEC13, RBSN, KIF9, SETMAR, AZI2, TMPPE, MTMR14, MRPS25, LIMD1-AS1, THRB-AS1, LINC00693, SPINK8, ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, SLC26A6, SLC6A1, SLC6A6, SLC6A11, SMARCC1, STAC, SYN2, BTD, MIR563, MIR564, TCTA, TDGF1, TGM4, TGFBR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 THRB, TIMP4, CLEC3B, TOP2B, NR2C2, FAM198A, CCR2, UBA7, UBE2E1, UBE2E2, UBP1, USP4, UQCRC1, VHL, VIPR1, WNT7A, XPC, ZNF35, BRPF1, SLC25A20, CRELD1, CAMKV, TMEM43, LRRC2, FYCO1, CCDC51, ZNF385D, HDAC11, TSEN2, GRIP2, CAMP, COLQ, EOMES, RTP3, LRRC2-AS1, C3orf20, ATRIP, NICN1, MON1A, JAGN1, LINC00852, IL17RC, POMGNT2, CAMK1, EAF1, DCLK3, BHLHE40, CAV3, CCK, KAT2B, BSN, LIMD1, UCN2, CCRL2, RPL14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SEC22C, ZNF502, LRRFIP2, OXNAD1, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SH3BP5, SLC4A7, ENTPD3, VGLL4, EDEM1, TBC1D5, TATDN2, IP6K1, EPM2AIP1, TRANK1, SRGAP3, IQSEC1, CDC25A, DLEC1, EXOG, XYLB, OXSR1, NR1D2) 0.353425607855733 653 0.0585584037570169 1.04624134816125 34694 0.31575318027059 3 2 1 -6.78411625412977 LTS-034 NA NA NA NA LTS-034 chr3 49978111 49999993 21883 * RBM6 NA 0 NA 1.377 1 NA NA NA NA NA LTS-034 chr3 49999994 50308916 308923 * c(RBM5-AS1, RBM6, RBM5, SLC38A3, GNAI2, GNAT1, SEMA3F, SEMA3B) 0.237051702018884 3 0.0186815416922694 1.6270030545063 629 0.280366233423004 5 4 1 -6.77625143228509 LTS-034 chr3 50308917 50310687 1771 * SEMA3B NA 0 NA 1.085 1 NA NA NA NA NA LTS-034 chr3 50310688 50375507 64820 * c(RASSF1, TUSC2, LSMEM2, NAT6, HYAL1, IFRD2, SEMA3B, HYAL3, HYAL2) 0.279626886207243 5 0.043309352338727 1.34781285774591 478 0.279450409566829 4 3 1 -6.73564933045037 LTS-034 chr3 50375508 50377939 2432 * RASSF1 NA 0 NA 0.914 1 NA NA NA NA NA LTS-034 chr3 50377940 52172340 1794401 * c(LINC00696, PARP3, IQCF4, ABHD14A-ACY1, MIR4787, NPRL2, CYB561D2, TMEM115, RASSF1, CISH, GPR62, IQCF1, DOCK3, DUSP7, RAD54L2, ABHD14A, POC1A, GRM2, RBM15B, IQCF2, IQCF5, IQCF3, IQCF6, C3orf18, ZMYND10, TEX264, HEMK1, PCBP4, RPL29, MAPKAPK3, MANF, ABHD14B, RRP9, CACNA2D2, ACY1, DCAF1) 0.330117878855367 11 0.0338740984448966 1.08147177527372 2418 0.223312418213654 3 2 1 -7.18654761703615 LTS-034 chr3 52172341 52179857 7517 * POC1A NA 0 NA 1.342 1 NA NA NA NA NA LTS-034 chr3 52179858 52302457 122600 * c(TWF2, PPM1M, ALAS1, POC1A, MIRLET7G, TLR9, WDR82) 0.48310263297753 6 0.0117075474232081 1.33103217111174 397 0.266601679595588 4 2 2 -10.8441569469556 LTS-034 chr3 52302458 52304654 2197 * WDR82 NA 0 NA 0.886 1 NA NA NA NA NA LTS-034 chr3 52304655 52457657 153003 * c(GLYCTK, DNAH1, MIR135A1, PHF7, WDR82, BAP1) 0.387279563140393 2 0.0565685424949238 1.06583442107511 641 0.218650287414463 3 2 1 -6.86594129141742 LTS-034 chr3 52457658 52467016 9359 * character(0) NA 0 NA 1.663 1 NA NA NA NA NA LTS-034 chr3 52467017 52588919 121903 * c(NISCH, STAB1, SMIM4, PBRM1, SEMA3G, NT5DC2, TNNC1) 0.264315774780828 6 0.0199139816879163 1.37543105675605 855 0.261683425884635 8 6 2 -7.12009638228582 LTS-034 chr3 52588920 52592225 3306 * PBRM1 NA 0 NA 0.913 1 NA NA NA NA NA LTS-034 chr3 52592226 59033091 6440866 * c(SNORD19B, MIR3938, TMEM110-MUSTN1, ARHGEF3-AS1, CACNA2D3-AS1, RPP14, FAM107A, FAM3D, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FLNB, FAM208A, ERC2, APPL1, GNL3, CCDC66, SPCS1, SPATA12, ITIH1, ITIH3, ITIH4, TMEM110, ARF4, MUSTN1, ARHGEF3, SFMBT1, PDHB, IL17RD, PXK, PBRM1, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, ABHD6, LRTM1, SELENOK, NEK4, SNORD19, SNORD69, TKT, ERC2-IT1, WNT5A, NA NA NA NA NA NA NA NA NA LTS-034 CACNA1D, SLMAP, ESRG, ACOX2, HESX1, RFT1, ACTR8) 0.355680590127687 136 0.0664563004483476 1.04218278682089 5667 0.272140178799031 3 2 1 -6.74914643916524 LTS-034 NA NA NA NA LTS-034 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 2.024 1 NA NA NA NA NA LTS-034 chr3 59035205 66502127 7466923 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.361760809685456 44 0.0371498024545239 1.13321105854263 2087 0.356998941251594 3 2 1 -6.89151105697339 LTS-034 chr3 66502128 66512855 10728 * LRIG1 NA 0 NA 1.442 1 NA NA NA NA NA LTS-034 chr3 66512856 67061653 548798 * c(LRIG1, KBTBD8) 0.461 1 NA 1.40714429718434 129 0.19256240808567 4 4 0 -5.77794314463088 LTS-034 chr3 67061654 69299233 2237580 * c(MIR3136, MIR4272, ARL6IP5, FAM19A4, FRMD4B, EOGT, FAM19A1, LMOD3, TMF1, SUCLG2, UBA3) 0.342691047682047 19 0.0575968546087259 0.987761955403761 897 0.251858022982678 3 2 1 -6.8895771389987 LTS-034 chr3 69299234 69985817 686584 * c(FRMD4B, MITF) NA 0 NA 0.934355591924624 69 0.143364473014629 3 NA NA -6.06273996444882 LTS-034 chr3 69985818 70016467 30650 * MITF 0.329 1 NA 1.2178604548044 101 0.285914520910231 4 4 0 -5.76690742758482 LTS-034 chr3 70016468 72495866 2479399 * c(MIR1284, LINC00870, RYBP, FOXP1, GPR27, EIF4E3, MITF, PROK2) 0.349797665496704 5 0.0518507473427336 1.08524988805051 557 0.282678526484536 3 2 1 -6.7691067376609 LTS-034 chr3 72495867 73108382 612516 * c(PPP4R2, SHQ1, GXYLT2) NA 0 NA 0.745984657908124 185 0.206282066481363 2 NA NA -5.76961137090467 LTS-034 chr3 73108383 73110039 1657 * PPP4R2 NA 0 NA 1.359 1 NA NA NA NA NA LTS-034 chr3 73110040 78742516 5632477 * c(ZNF717, MIR1324, PPP4R2, PDZRN3, CNTN3, EBLN2, ROBO1, ROBO2, FAM86DP) 0.345422856659981 202 0.0890820297491882 1.21660828499903 1191 0.448296808441168 3 2 1 -7.05778207575424 LTS-034 chr3 78742517 78763490 20974 * ROBO1 NA 0 NA 0.899 1 NA NA NA NA NA LTS-034 chr3 78763491 87299075 8535585 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, VGLL3, LINC00971, ROBO1) 0.326616730606802 9 0.0462532281155717 1.06769443710915 557 0.40417234406585 3 2 1 -7.03874530560743 LTS-034 chr3 87299076 90283666 2984591 * c(EPHA3, CHMP2B, C3orf38, HTR1F, POU1F1, ZNF654, CGGBP1) NA 0 NA 1.02578223674583 683 0.294613311648604 3 NA NA -5.78513025953027 LTS-034 chr3 93591838 93593119 1282 * PROS1 0.326 1 NA 1.00853332135907 25 0.31418109427526 3 3 0 -5.76442860453153 LTS-034 chr3 93593120 100328860 6735741 * c(MTHFD2P1, MIR548G, MIR3921, ST3GAL6-AS1, ST3GAL6, FILIP1L, COL8A1, CRYBG3, DCBLD2, CPOX, ARL13B, DHFR2, GABRR3, LINC00879, OR5K1, OR5H1, GPR15, EPHA6, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, TMEM45A, TBC1D23, PROS1, CLDND1, NIT2, NSUN3, TMEM30CP, OR5H6, OR5H2, OR5AC2, ARL6, CMSS1, MINA, ADGRG7, TOMM70) 0.34671035614906 50 0.0403741127406143 1.02690983392917 2277 0.280572899090862 3 2 1 -6.84873045975229 LTS-034 chr3 100328861 100348372 19512 * ADGRG7 NA 0 NA 1.799 1 NA NA NA NA NA LTS-034 chr3 100348373 100438961 90589 * c(TFG, ADGRG7) 0.379416596077835 3 0.0252388589282479 1.69739799589705 92 0.260983584385458 8 5 3 -6.86426546544554 LTS-034 chr3 100438962 100447585 8624 * TFG NA 0 NA 0.976 1 NA NA NA NA NA LTS-034 chr3 100447586 122598293 22150708 * c(ZBTB11-AS1, ZBTB20-AS1, LINC00882, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, TFG, POLQ, HHLA2, FSTL1, LRRC58, CCDC58, ZPLD1, CD200R1, FAM172BP, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, FAM162A, ZBTB11, MORC1, GOLGB1, TUSC7, NA NA NA NA NA NA NA NA NA LTS-034 LINC00636, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, KPNA1, FLJ22763, LINC01205, LSAMP, MIR198, CD200, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, IFT57, DPPA4, TMEM39A, ABHD10, CFAP44, EAF2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, POPDC2, NFKBIZ, ATG3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, PARP9, CASR, RETNLB, CCDC54, DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3) 0.353986387447681 249 0.0581812020639877 1.03580565406523 12121 0.375039260569361 3 2 1 -6.78571060184129 LTS-034 NA NA NA NA LTS-034 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.361 1 NA NA NA NA NA LTS-034 chr3 122598385 141161766 18563382 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-034 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.348141079421143 193 0.0588067166425723 1.07772610471291 13532 0.253651762421364 3 2 1 -6.81231246262614 LTS-034 NA NA NA NA LTS-034 chr3 141161767 160939577 19777811 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, DHX36, AGTR1, AADACP1, C3orf58, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, SERP1, SLC9A9, IGSF10, C3orf33, TRIM59, NA NA NA NA NA NA NA NA NA LTS-034 GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, SHOX2, MFSD1, SIAH2, P2RY12, IQCJ, HLTF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, CHST2, RNF7, TSC22D2, P2RY14) 0.35480306524293 212 0.0623593422149179 1.01641314953157 9795 0.267589216297044 3 2 1 -7.00321914276167 LTS-034 NA NA NA NA LTS-034 chr3 160939578 168806922 7867345 * c(LOC101243545, PDCD10, OTOL1, WDR49, SPTSSB, MECOM, SLITRK3, GOLIM4, NMD3, SERPINI1, SERPINI2, BCHE, LINC01330, LINC01192, SI, MIR551B, ZBBX, EGFEM1P) 0.356037729235258 21 0.067904695117846 1.08970560996887 1206 1.07321742940978 3 2 1 -6.73884186719104 LTS-034 chr3 168806923 168807701 779 * MECOM NA 0 NA 1.512 1 NA NA NA NA NA LTS-034 chr3 168807702 169540397 732696 * c(LRRC34, MECOM, LRRIQ4, MYNN, TERC, ACTRT3) 0.360560689447062 5 0.0507415017515249 1.34806644583102 300 0.263541002862023 3 2 1 -7.08110980182962 LTS-034 chr3 169540398 169558025 17628 * c(LRRIQ4, LRRC31) 0.326 1 NA 1.36268232682111 55 0.328072637107783 4 4 0 -5.7644149148748 LTS-034 chr3 169558026 195306436 25748411 * c(MIR944, DPPA2P3, LOC100128164, LINC00887, LOC100131635, SNAR-I, MIR1224, LINC00578, LINC00888, TMEM44-AS1, LOC100507391, ABCC5, MIR4789, MIR5692C1, NAALADL2-AS3, OPA1-AS1, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, LINC01014, XXYLT1-AS2, ALG3, KCNMB2, IGF2BP2, CLDN16, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, TTC14, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, HTR3C, DVL3, ECT2, EHHADH, NA NA NA NA NA NA NA NA NA LTS-034 AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, EPHB3, ETV5, FGF12, NLGN1, TNIK, MCF2L2, ATP11B, VPS8, ACAP2, LOC253573, NAALADL2, UTS2B, GHSR, GPR160, FETUB, LAMP3, KCNMB3, GP5, HTR3E, C3orf70, TPRG1, HRG, HES1, CCDC39, EHHADH-AS1, LPP-AS2, SAMD7, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, SOX2-OT, IL1RAP, KNG1, TMEM212, FLJ46066, FLJ42393, LINC00884, LPP, NDUFB5, OPA1, CLDN11, ZNF639, PEX5L, DNAJB11, PIK3CA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PLD1, DCUN1D1, POLR2H, KLHL24, PPP1R2, TBCCD1, P3H2, ABCF3, LSG1, PARL, MFN1, YEATS2, PRKCI, MASP1, EIF5A2, MCCC1, PSMD2, HRASLS, MRPL47, NCEH1, SLC7A14, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, GMNC, LOC647323, FNDC3B, ST6GAL1, SKIL, SLC2A2, SOX2, SST, SNORA81, SNORD66, MIR569, THPO, SEC62, ATP13A3, TBL1XR1, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 B3GNT5, ATP13A4, MGC2889, ACTL6A, TP63, CHRD, TNFSF10, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ, CAMK2N2, ECE2) 0.280914256533724 240 0.0481174250500264 1.33553456484128 14877 0.413641720664085 4 3 1 -6.7492389108786 LTS-034 NA NA NA NA LTS-034 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.813 1 NA NA NA NA NA LTS-034 chr3 195345046 195476016 130971 * c(MUC20, MUC4, MIR570, SDHAP2) 0.408800629423792 25 0.0964070018204072 1.79666084642773 200 1.96904004491207 5 3 2 -6.73367388479869 LTS-034 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.203 1 NA NA NA NA NA LTS-034 chr3 195477782 196556096 1078315 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, RNF168, SLC51A, FBXO45, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MUC4, PAK2, PCYT1A, PIGX, TFRC, CEP19) 0.279973832206294 56 0.0610961744503494 1.29059045163174 1694 0.285646944430904 4 3 1 -6.75179110955094 LTS-034 chr3 196556097 196556187 91 * PAK2 NA 0 NA 1.902 1 NA NA NA NA NA LTS-034 chr3 196556188 196842957 286770 * c(MFI2-AS1, NCBP2-AS2, DLG1, SENP5, NCBP2, MELTF, PAK2, PIGZ) 0.214816688367691 8 0.0198453844939897 1.5440163619011 569 0.318196659326484 5 4 1 -7.16120110576726 LTS-034 chr3 196842958 196846266 3309 * DLG1 NA 0 NA 1.205 1 NA NA NA NA NA LTS-034 chr3 196846267 197495316 649050 * c(MIR922, DLG1-AS1, MIR4797, DLG1, LOC220729, BDH1, FYTTD1, RUBCN) 0.285567152673404 8 0.0559821400091136 1.25857967905814 406 0.251225250723301 4 3 1 -6.76710316800242 LTS-034 chr3 197495317 197770512 275196 * c(RPL35A, IQCG, FYTTD1, LRCH3, LMLN) NA 0 NA 1.29625439957517 509 0.29910931168232 4 NA NA -5.7678208901883 LTS-034 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.36 1 NA 1.01722558468631 11 0.265860045204923 3 3 0 -5.76450755089656 LTS-034 chr4 60304 2900098 2839795 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, NA NA NA NA NA NA NA NA NA LTS-034 TMEM129) 0.436736956091267 91 0.0794718109921294 0.749487468046244 4512 0.182579101541503 2 1 1 -6.75335069307125 LTS-034 NA NA NA NA LTS-034 chr4 2900099 3042483 142385 * c(MFSD10, ADD1, GRK4, NOP14-AS1, NOP14) 0.355342278369211 9 0.0512781088228149 1.04551841897431 386 0.233784396963331 3 2 1 -6.73903476706839 LTS-034 chr4 3042484 3076420 33937 * c(HTT-AS, HTT) NA 0 NA 0.581 1 NA NA NA NA NA LTS-034 chr4 3076421 17528812 14452392 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, CCDC96, BOD1L1, FBXL5, NSG1, GPR78, LOC285484, DOK7, LINC00955, LINC01097, LINC01096, NA NA NA NA NA NA NA NA NA LTS-034 FAM200B, HTT, HGFAC, HMX1, MSANTD1, FAM86EP, USP17L6P, USP17L9P, LRPAP1, CPEB2-AS1, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, NKX3-2, QDPR, RGS12, AFAP1, S100P, DEFB131, CLRN2, LOC650293, BST1, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.448104050278201 189 0.0536013229660258 0.774830372307781 7281 0.35372036725096 2 1 1 -6.76566822135892 LTS-034 NA NA NA NA LTS-034 chr4 17528813 17578793 49981 * character(0) NA 0 NA 0.3 1 NA NA NA NA NA LTS-034 chr4 17578794 17695119 116326 * c(FAM184B, LAP3, MED28) 0.45 1 NA 0.448543389520092 284 0.111741632985109 1 1 0 -5.77679421619626 LTS-034 chr4 17695120 17706655 11536 * FAM184B NA 0 NA 0.852 1 NA NA NA NA NA LTS-034 chr4 17706656 42965159 25258504 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, SLC34A2, PTTG2, PPARGC1A, LIAS, ARAP2, PACRGL, SHISA3, KLB, DHX15, ADGRA3, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, LCORL, FAM184B, DCAF4L1, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, LOC344967, RBPJ, KCNIP4-IT1, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, MIR218-1, PCDH7, KLHL5, SEPSECS, KLF3, RBM47, DCAF16, NA NA NA NA NA NA NA NA NA LTS-034 TMEM33, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, NWD2, STIM2, WDR19, GBA3, RFC1, RPL9, NCAPG, SOD3, MIR573, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, KCNIP4, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1, SLIT2) 0.454590021001677 192 0.0490410617922399 0.761902421712406 7883 0.370612116487193 2 1 1 -6.80027587862508 LTS-034 NA NA NA NA LTS-034 chr4 42965160 44176476 1211317 * c(KCTD8, GRXCR1) NA 0 NA 0.743747360761153 24 0.300660333049714 2 NA NA -5.77050836373156 LTS-034 chr4 44176477 44653599 477123 * c(YIPF7, KCTD8) 0 1 NA 0.440445634387248 84 0.264574841615439 1 1 0 -5.78181729939405 LTS-034 chr4 44653600 44724289 70690 * c(GNPDA2, YIPF7, GUF1) 0.305810491446032 5 0.0743908596535892 0.456422412450994 274 0.165887653157877 3 2 1 -7.97041435847022 LTS-034 chr4 46037806 46995366 957561 * c(COX7B2, GABRA2, GABRA4, GABRG1) 0.316596157853484 16 0.0352628227268701 1.09729553769323 638 0.324241324800852 4 3 1 -7.47872707227511 LTS-034 chr4 46995367 47322313 326947 * c(GABRA4, GABRB1) NA 0 NA 1.07845638121134 51 0.15547888325189 3 NA NA -5.76713537782766 LTS-034 chr4 47322314 47405372 83059 * GABRB1 NA 0 NA 0.723 1 NA NA NA NA NA LTS-034 chr4 47405373 47514685 109313 * c(GABRB1, COMMD8, ATP10D) 0.47 1 NA 0.721768760820097 75 0.192918642236883 2 2 0 -5.77024132924828 LTS-034 chr4 47514686 48541973 1027288 * c(CORIN, CNGA1, NFXL1, NIPAL1, SLC10A4, FRYL, ZAR1, ATP10D, SLAIN2, TEC, TXK) 0.444698715235595 23 0.102049588813846 0.739154837500443 1229 0.18224416905702 2 1 1 -6.75649353431678 LTS-034 chr4 48541974 49064107 522134 * c(OCIAD2, FRYL, OCIAD1, CWH43) NA 0 NA 0.731321159505745 421 0.191280365679049 2 NA NA -5.78124475752514 LTS-034 chr4 52709193 52883570 174378 * c(DCUN1D4, LRRC66) 0 1 NA 0.484944270997228 209 0.396062833094141 1 1 0 -5.76504735738043 LTS-034 chr4 52883571 68906274 16022704 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, SNORA26, NA NA NA NA NA NA NA NA NA LTS-034 SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.173932878709985 26 0.0983905561446907 0.460459965335828 4320 0.153463396192061 1 1 0 -6.9167840251805 LTS-034 NA NA NA NA LTS-034 chr4 68906275 68907458 1184 * UBA6-AS1 NA 0 NA 0.177448125983124 41 0.1317217225636 0 NA NA -5.76441352104835 LTS-034 chr4 68907459 68907460 2 * UBA6-AS1 NA 0 NA 0.459 1 NA NA NA NA NA LTS-034 chr4 68907461 69363297 455837 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.111417614880657 4 0.104980553754811 0.466758987480423 395 0.136569538085519 1 1 0 -7.02986100162178 LTS-034 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.479 1 NA NA NA NA NA LTS-034 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.46112099330525 41 0.34213060193512 4 NA NA -5.7677114426087 LTS-034 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.617 1 NA NA NA NA NA LTS-034 chr4 69512574 90875624 21363051 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, CNOT6L, NA NA NA NA NA NA NA NA NA LTS-034 C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, SNCA-AS1, MRPL1, BMP3, SNCA, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.179582078403166 103 0.0798570980018399 0.461936233343857 12889 0.164876222989746 1 1 0 -6.88236467179724 LTS-034 NA NA NA NA LTS-034 chr4 90875625 98109018 7233394 * c(PDLIM5, MMRN1, HPGDS, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.101238179758456 10 0.0941969567802839 0.517482677696614 1335 0.191442586035347 1 1 0 -8.1217079869205 LTS-034 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.473 1 NA NA NA NA NA LTS-034 chr4 98480011 130034482 31554472 * c(SNHG8, PP12613, MIR1243, MIR2054, MIR1973, MIR3684, LOC100507053, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, PGRMC2, SEC24B, CENPE, RRH, PLK4, PRDM5, NUDT6, CYP2U1, DDIT4L, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, ADAD1, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SPATA5, BBS12, SGMS2, SYNPO2, EGF, EIF4E, ENPEP, FABP2, FGF2, HSPA4L, METAP1, NPNT, MFSD8, LOC256880, NA NA NA NA NA NA NA NA NA LTS-034 PPA2, DAPP1, DKK2, INTU, LINC01091, RPL34-AS1, STPG2, ANK2, H2AFZ, HADH, ANXA5, CFI, LRIT3, IL2, PCNAP1, LINC01061, C4orf3, MAD2L1, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, MYOZ2, PITX2, EXOSC9, GAR1, USP53, TET2, ARHGEF38, MCUB, BANK1, LARP1B, BBS7, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, ANKRD50, METTL14, OSTC, IL21, RAP1GDS1, RPL34, NEUROG2, SLC39A8, LEF1-AS1, CEP170P1, LOC645513, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NDST4, ETNPPL, SNORA24, TACR3, MIR577, TRPC3, CETN4P, UBE2D3, UGT8, ELOVL6, NDNF, FAT4, ARSJ, GSTCD, TNIP3, JADE1, DNAJB14, ABHD18, ALPK1, CXXC4, PLA2G12A, CAMK2D, SLC25A31, CASP6, C4orf17, QRFPR, KIAA1109, COL25A1, PRSS12, LAMTOR3, PDE5A, CCNA2, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.184693624363722 59 0.095768536102969 0.471777581107477 13281 0.225631936369122 1 1 0 -6.73763997171413 LTS-034 NA NA NA NA LTS-034 chr4 133357012 155456931 22099920 * c(SCOC-AS1, MIR3140, LINC01095, MIR4799, LINC00499, ANAPC10, CLGN, MAB21L2, LSM6, PABPC4L, ZNF827, SH3D19, MGAT4D, DCLK2, FREM3, MMAA, EDNRA, ELF2, TIGD4, TMEM154, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, NOCT, ARFIP1, ZNF330, RNF175, GYPA, GYPB, GYPE, ANXA2P1, PRSS48, IL15, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, GATB, PLRG1, PCDH18, DKFZP434I0714, POU4F2, OTUD4, DCHS2, FBXW7, MAML3, TMEM184C, NA NA NA NA NA NA NA NA NA LTS-034 RNF150, PCDH10, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, HHIP-AS1, C4orf51, TLR2, FAM160A1, UCP1, ARHGAP10, NAA15, SETD7, RAB33B, TTC29, MND1, SLC10A7, USP38, SMARCA5, MGARP, FHDC1, INPP4B, SNORD73A, PRMT9, LRBA) 0.206691325034179 12 0.122050256663045 0.760676650272297 7652 0.218753033412313 2 2 0 -7.06075578111955 LTS-034 NA NA NA NA LTS-034 chr4 155456932 159092498 3635567 * c(CTSO, RBM46, FGA, FGB, FGG, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, NPY2R, FAM198B, ASIC5, PLRG1, PDGFC, TDO2, MAP9, LRAT) 0.0619622105339449 6 0.0720351765921808 0.823528629863708 1608 0.393856018411002 2 2 0 -7.11885624744992 LTS-034 chr4 159092499 187003643 27911145 * c(CLDN24, MIR1305, MIR4276, MIR3945, MIR3688-1, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, MIR3688-2, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, CPE, ASB5, WWC2-AS2, FAM218A, C4orf45, DCTD, TRIM60, AGA, C4orf46, TMEM192, RWDD4, PRIMPOL, ETFDH, ACSL1, PALLD, ANP32C, CCDC110, FBXO8, GK3P, PDLIM3, GPM6A, LINC01098, SLC25A4, HMGB2, HPGD, ANKRD37, ING2, IRF2, LOC389247, TRIM61, NA NA NA NA NA NA NA NA NA LTS-034 HELT, FAM92A1P2, C4orf47, GALNTL6, NEK1, NPY1R, NPY5R, SPOCK3, AADAT, FAM198B, GALNT7, CLDN22, PPID, HPF1, MARCH1, NEIL3, TMEM144, TMA16, UFSP2, DDX60, CDKN2AIP, TENM3, LRP2BP, FSTL5, STOX2, CFAP97, FNIP2, SH3RF1, RXFP1, SPCS3, TRAPPC11, MSMO1, SLED1, MIR578, TLL1, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, TKTL2, SORBS2, CBR4, SAP30, LOC90768, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DDX60L, NAF1, HAND2, RAPGEF2, MFAP3L) 0.087952877206566 18 0.0697967403774722 0.757722483940143 8130 0.276804854047317 2 2 0 -6.83938585759235 LTS-034 NA NA NA NA LTS-034 chr4 187003644 190946065 3942422 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3) 0.219933614356946 18 0.104347959884351 0.825299121787265 1103 0.277631556130665 2 2 0 -7.45974696446026 LTS-034 chr4 190946066 190981567 35502 * character(0) NA 0 NA 0.965723938177558 19 1.6613176954996 3 NA NA -5.76447556735934 LTS-034 chr5 140347 184393 44047 * PLEKHG4B 0.086 1 NA 1.02923643353807 151 0.185673939085778 3 3 0 -5.76502765135594 LTS-034 chr5 184394 38966860 38782467 * c(SNORD123, LOC100130744, PDCD6, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, LOC100996325, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, TPPP, EXOC3, C1QTNF3, EXOC3-AS1, EGFLAM, NADK2, UGT3A1, CAPSL, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, NA NA NA NA NA NA NA NA NA LTS-034 CTNND2, PLEKHG4B, C5orf38, IRX2, TTC23L, DAP, UGT3A2, ADAMTS16, DNAH5, RANBP3L, CCT5, PDZD2, FBXL7, ICE1, AMACR, RICTOR, LINC01018, NIPBL, PP7080, RAI14, GDNF, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, IL7R, LRRC14B, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, CEP72, ANKH, PRLR, PRDM9, AHRR, RAD1, SDHA, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, SLC9A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155 NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ) 0.248441594965216 17 0.17394752843044 1.06579374181839 13165 0.251914578018866 3 2 1 -6.98722940388109 LTS-034 NA NA NA NA LTS-034 chr5 38966861 38967285 425 * RICTOR NA 0 NA 0.935 1 NA NA NA NA NA LTS-034 chr5 38967286 43381740 4414455 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, MROH2B, LOC153684, DAB2, NIM1K, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, ANXA2R, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, LOC648987, C6, C7, C9, ZNF131, CARD6) 0.14821918972827 6 0.117594926194401 0.999852742791475 2352 0.435586433008228 3 3 0 -6.95737273436344 LTS-034 chr5 43381741 45696278 2314538 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, HCN1, C5orf34, CCL28, TMEM267) NA 0 NA 1.01211379926856 613 0.250577939952569 3 NA NA -5.80918048586007 LTS-034 chr5 49692017 52098852 2406836 * c(EMB, ISL1, ITGA1, PELO, LOC642366, PARP8) 0.256 1 NA 0.42012238102171 491 0.120695124302793 1 1 0 -6.81382253039472 LTS-034 chr5 52098853 55528850 3429998 * c(MIR449C, MIR5687, CCNO, FST, ESM1, SNX18, IL31RA, SLC38A9, CDC20B, SKIV2L2, LOC257396, GZMA, GZMK, MCIDAS, IL6ST, ITGA1, ITGA2, RNF138P1, MOCS2, FLJ31104, NDUFS4, GPX8, DHX29, DDX4, ARL15, MIR449A, MIR449B, MIR581, ANKRD55, PLPP1, HSPB3) 0.207556825554904 19 0.057266740191526 0.437051816974856 2240 0.133101498730337 1 1 0 -7.37304066594913 LTS-034 chr5 55528851 55753573 224723 * ANKRD55 NA 0 NA 0.667 1 NA NA NA NA NA LTS-034 chr5 55753574 69337761 13584188 * c(LRRC70, FAM159B, NA, LOC100303749, OCLN, IPO11-LRRC70, CDK7, CWC27, PLK2, ADAMTS6, RAB3C, ERCC8, SETD9, SREK1, MARVELD2, MIER3, CCDC125, GAPT, PPWD1, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, HTR1A, ACTBL2, TRIM23, MAST4, KIF2A, RGS7BP, CD180, MAP3K1, IPO11, PDE4D, PIK3R1, SGTB, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, GUSBP3, TAF9, GTF2H2C, ELOVL7, TRAPPC13, SERF1A, NA NA NA NA NA NA NA NA NA LTS-034 CCNB1, NDUFAF2, MRPS36) 0.12994788447735 9 0.118457798392508 0.751521557052661 5435 0.212543134964287 2 2 0 -6.79517485898342 LTS-034 NA NA NA NA LTS-034 chr5 69337762 70247822 910061 * c(GUSBP9, SMA4, SMA5, LOC441081, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.220824472024144 40 0.274251966311348 0 NA NA -6.11926085323712 LTS-034 chr5 70247823 70308793 60971 * c(GUSBP9, NAIP, SMN1, SMN2) NA 0 NA 0.463685589767589 45 0.0666820209591155 1 NA NA -5.76600301161631 LTS-034 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.716 1 NA NA NA NA NA LTS-034 chr5 70357051 93300317 22943267 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-034 ANKRD31, SERINC5, FAM169A, RNU5E-1, NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.212414033360767 14 0.127586902080181 0.767640522122646 9950 0.353569021521118 2 2 0 -7.06551852151015 LTS-034 NA NA NA NA LTS-034 chr5 93300318 93386349 86032 * FAM172A NA 0 NA 0.595 1 NA NA NA NA NA LTS-034 chr5 93386350 94001755 615406 * c(KIAA0825, FAM172A, SLF1) NA 0 NA 0.598806281823292 221 0.150067553690016 1 NA NA -6.59635859864692 LTS-034 chr5 94001756 94005817 4062 * SLF1 NA 0 NA 0.791 1 NA NA NA NA NA LTS-034 chr5 94005818 96367779 2361962 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.0996598001598685 2 0.0777817459305202 0.71043667008516 2064 0.160235836294611 2 2 0 -7.03971948453395 LTS-034 chr5 96367780 96371040 3261 * character(0) NA 0 NA 1.05928642768824 66 0.2702730316828 3 NA NA -5.76441013882119 LTS-034 chr5 96371041 118965554 22594514 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, NA NA NA NA NA NA NA NA NA LTS-034 FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.189962326424922 23 0.102270431243441 0.756062047653673 6514 0.26912094818587 2 2 0 -7.06212151031462 LTS-034 NA NA NA NA LTS-034 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 0.894 1 NA NA NA NA NA LTS-034 chr5 118968368 128369276 9400909 * c(LOC100505841, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, FBN2, SLC27A6, SNX24, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.07389745433769 4 0.0187860764042593 0.806891641401229 2919 0.268586100527209 2 2 0 -8.96899119939133 LTS-034 chr5 128369277 128430291 61015 * SLC27A6 NA 0 NA 0.556 1 NA NA NA NA NA LTS-034 chr5 128430292 133509798 5079507 * c(KIAA1024L, MIR1289-2, MIR3936, MIR4633, MIR4460, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, ADAMTS19, FSTL4, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, ISOC1, RAPGEF6, ZCCHC10, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, VDAC1, PDLIM4, P4HA2, LYRM7, FNIP1) 0.143170837910644 2 0.0254558441227157 0.738841283637521 3517 0.17994571427324 2 2 0 -7.49713467909067 LTS-034 chr5 133509799 133530021 20223 * SKP1 NA 0 NA 1.078 1 NA NA NA NA NA LTS-034 chr5 133530022 133561863 31842 * c(MIR3661, CDKL3, PPP2CA) NA 0 NA 0.988392435411894 105 0.152756645868986 3 NA NA -5.76829161082282 LTS-034 chr5 133561864 133634019 72156 * c(CDKL3, PPP2CA) NA 0 NA 0.68 1 NA NA NA NA NA LTS-034 chr5 133634020 138653349 5019330 * c(VTRNA2-1, MIR874, MIR4461, C5orf66, KIF20A, SEC24A, BRD8, HNRNPA0, C5orf24, DCANP1, CTNNA1, SLC25A48, EGR1, ETF1, JADE2, LRRTM2, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, SAR1B, CDKL3, FAM13B, FAM53C, REEP2, KDM3B, PITX1, TRPC7, SIL1, SPOCK1, TGFBI, SNHG4, UBE2B, WNT8A, TXNDC15, CAMLG, NME5, PCBD2, NA NA NA NA NA NA NA NA NA LTS-034 CDC23, CDKN2AIPNL, MYOT, CXCL14, H2AFY, SMAD5-AS1, MATR3, DDX46, CDC25C) 0.108460498970034 5 0.0285954541841881 0.765448784925167 4330 0.395136205320289 2 2 0 -6.76452386594212 LTS-034 NA NA NA NA LTS-034 chr5 138653350 138653370 21 * MATR3 NA 0 NA 0.537 1 NA NA NA NA NA LTS-034 chr5 138653371 138667373 14003 * MATR3 0.133 1 NA 0.411381538880261 92 0.0859318027582031 1 1 0 -5.78464932071311 LTS-034 chr5 138667374 138699403 32030 * PAIP2 NA 0 NA 1.206 1 NA NA NA NA NA LTS-034 chr5 138699404 139060052 360649 * c(SPATA24, DNAJC18, TMEM173, PROB1, MZB1, PAIP2, CXXC5, ECSCR, UBE2D2, SLC23A1) NA 0 NA 1.00665190887544 523 0.209033027563371 3 NA NA -5.77704856061468 LTS-034 chr5 139060053 139060108 56 * CXXC5 NA 0 NA 0.818 1 NA NA NA NA NA LTS-034 chr5 139060109 175386657 36326549 * c(GNPDA1, SRA1, FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, LINC01024, LOC100505658, MIR4634, MIR378E, LOC100652758, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, G3BP1, APBB3, TNIP1, CDX1, SLU7, CPLX2, FAXDC2, FAM114A2, TCERG1, SPINK5, SOX30, SYNPO, SLC35A4, PWWP2A, C1QTNF2, SCGB3A2, C5orf47, PPARGC1B, C5orf58, AFAP1L1, GRPEL2, LSM11, GPR151, ZNF300P1, NUDCD2, UBLCP1, CSF1R, CSNK1A1, ADRA1B, NA NA NA NA NA NA NA NA NA LTS-034 NKX2-5, SLC36A2, SPINK13, CREBRF, JAKMIP2-AS1, ZMAT2, PPP1R2P3, FAM71B, PRELID2, SH3RF2, PLAC8L1, RNF145, ADRB2, DIAPH1, DOCK2, DPYSL3, DRD1, SLC26A2, HBEGF, DUSP1, EBF1, STK32A, SLC36A1, FABP6, FAT2, FGF1, ABLIM3, FOXI1, HMGXB3, ARHGAP26, ATP10B, WWC1, FBXW11, LARP1, HARS2, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, PCDHGA12, CCDC69, PCDHB5, HAVCR1, CYFIP2, IL17B, GLRA1, MAT2B, GM2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 EFCAB9, SH3PXD2B, LOC285593, RELL2, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, NR3C1, MRPL22, PCDHB1, TLX3, HARS, KCNIP1, ANXA6, HMMR, HRH2, NDST1, HTR4, ARSI, IRGM, FBLL1, NIPAL4, IK, IL12B, ITK, DND1, KCNMB1, SAP30L-AS1, C5orf46, ARHGEF37, LCP2, SPINK6, ANKHD1-EIF4EBP3, MIR103A1, MIR143, MIR146A, MIR218-2, SPINK14, FNDC9, MFAP3, FLJ16171, MSX2, NDUFA2, ATOX1, NPM1, IGIP, PCDH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PCDHGC3, RPL26L1, DCTN4, PCDH12, PDE6A, LARS, CXXC5, PDGFRB, HMP19, PFDN1, RBM27, NEURL1B, POU4F3, PCDHB18P, PCDHB17P, WDR55, ANKHD1, SPDL1, THG1L, PPP2R2B, TMCO6, GALNT10, RBM22, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, NMUR2, ERGIC1, TENM2, KCTD16, PCDHB16, HMHB1, PURA, RARS, RPS14, ZBED8, GRXCR2, SPINK9, ARAP3, SGCD, RANBP17, SLC6A7, SLIT3, BNIP1, SPARC, SPINK1, SNORA74B, STK10, TAF7, MIR585, TCOF1, TTC1, CARMN, LOC729080, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PCYOX1L, CCNJL, SH3TC2, PANK3, SAP30L, CPEB4, NDFIP1, CAMK2A, FBXO38, YIPF5, TIGD6, SPRY4, SLC4A9, SLC25A2, PCDHB19P, PSD2, THOC3, CYSTM1, SPINK7, HAVCR2, SMIM3, STC2, EIF4EBP3, PCDHGB4, ADAM19, FGF18, HDAC3, FCHSD1, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CD14, CNOT8, SFXN1, HAND1, MED7, NRG2, RNF14, CLINT1, PCDHGA8, CD74, PCDHA9, KIAA0141, JAKMIP2) 0.0840884210516697 50 0.0942905972761541 0.763697727792944 23343 0.26927422606979 2 2 0 -6.79729148672026 LTS-034 NA NA NA NA LTS-034 chr5 175386658 175394264 7607 * THOC3 NA 0 NA 0.31060576042416 79 0.245065115312778 1 NA NA -5.7774434958047 LTS-034 chr5 175394265 175395032 768 * THOC3 NA 0 NA 1.334 1 NA NA NA NA NA LTS-034 chr5 175395033 176900635 1505603 * c(MIR4281, LOC100507387, RGS14, LMAN2, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, NOP16, UIMC1, RAB24, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, PRR7, MXD3, THOC3, UNC5A) 0.0710481745131678 2 0.0678822509939086 0.735379434661503 2689 0.161843075157726 2 2 0 -7.02650715626528 LTS-034 chr5 176900636 176910317 9682 * DBN1 NA 0 NA 1.036 1 NA NA NA NA NA LTS-034 chr5 176910318 176981364 71047 * c(DDX41, FAM193B, DOK3, PDLIM7) NA 0 NA 1.04897324640057 339 0.244615110501578 3 NA NA -5.76447293530086 LTS-034 chr5 176981365 177019168 37804 * FAM193B NA 0 NA 0.803 1 NA NA NA NA NA LTS-034 chr5 177019169 180375393 3356225 * c(MIR1229, HEIH, MGAT4B, B4GALT7, ZNF354B, OR2Y1, LOC202181, TBC1D9B, N4BP3, FLT4, RASGEF1C, FAM153A, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, TMED9, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.180741502846357 12 0.135706540562772 0.756509552581393 3819 0.210064047623905 2 2 0 -6.87559259358569 LTS-034 chr5 180375394 180429824 54431 * c(BTNL3, BTNL8) NA 0 NA 0.0780516738350768 65 0.0659838339758599 0 NA NA -8.68742178559238 LTS-034 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.737 1 NA NA NA NA NA LTS-034 chr5 180430826 180488260 57435 * c(BTNL3, BTNL9) 0 1 NA 0.749303639886186 139 0.223193495795756 2 2 0 -5.7646899270368 LTS-034 chr5 180488261 180688111 199851 * c(MIR4638, RACK1, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 0.737537849424617 387 0.144993312339227 2 NA NA -5.77176796067039 LTS-034 chr6 203389 367481 164093 * DUSP22 0.171 1 NA 0.950595951437879 113 0.171551065788582 3 3 0 -5.80308485016634 LTS-034 chr6 367482 367484 3 * character(0) NA 0 NA 0.765 1 NA NA NA NA NA LTS-034 chr6 367485 391716 24232 * character(0) NA 0 NA 2.976 1 NA NA NA NA NA LTS-034 chr6 391717 24601362 24209646 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, ECI2, CAP2, FARS2, RPP40, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, FAM50B, NA NA NA NA NA NA NA NA NA LTS-034 GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, MYLIP, HIVEP1, ID4, MYLK4, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, SERPINB6, SERPINB9, GFOD1, ELOVL2, CDKAL1, PAK1IP1, EXOC2, PRL, WRNIP1, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 BMP6, SOX4, BPHL, SSR1, MIR548A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, ALDH5A1, TXNDC5, TMEM14B, RIOK1, DTNBP1, ADTRP, RIPK1, PRPF4B, GCM2, CD83, FOXQ1, CDYL, LY86, EEF1E1, KIAA0319, NUP153) 0.418775098689311 257 0.052063154391887 1.55867394688945 10059 0.452010422706991 5 3 2 -6.97976298647123 LTS-034 NA NA NA NA LTS-034 chr6 24601363 25924134 1322772 * c(SLC17A4, SLC17A2, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, GMNN, TDP2, CARMIL1, ACOT13, SLC17A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.40506299904557 36 0.0508528143779548 1.46985409084393 1120 0.364103698920293 5 3 2 -6.81023297566162 LTS-034 chr6 25924135 26017675 93541 * c(SLC17A2, TRIM38, HIST1H1A) 0.432 1 NA 1.5223531981022 85 0.272313382762163 5 5 0 -5.76913401116964 LTS-034 chr6 26017676 26285744 268069 * c(HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.436205787532434 38 0.0418516736690983 1.36671710418919 566 0.366468770982016 4 2 2 -6.73456814320105 LTS-034 chr6 26285745 26285748 4 * character(0) 0.402 1 NA 0.769 1 NA NA NA NA NA LTS-034 chr6 26285749 28349832 2064084 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, LINC01012, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, NKAPL, TOB2P1, OR2B6, LOC285819, ABT1, HIST1H1B, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HCG11, BTN2A3P, ZSCAN31, ZNF192P1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, NA NA NA NA NA NA NA NA NA LTS-034 HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.436628931874381 16 0.0472760950869112 1.48720785442377 2084 0.387156345725144 4 2 2 -6.80649915358875 LTS-034 NA NA NA NA LTS-034 chr6 28349833 29798154 1448322 * c(ZSCAN23, GPX6, ZSCAN12) 0.407395597454697 16 0.0290756914506488 1.58034894971577 1413 0.329389977472117 5 3 2 -6.74819319408007 LTS-034 chr6 29798155 29855582 57428 * character(0) NA 0 NA 0.688 1 NA NA NA NA NA LTS-034 chr6 29855583 29910768 55186 * character(0) 0.337773917646436 8 0.0880320558498031 0.800157130796965 49 0.50166962900565 3 2 1 -6.78259642572247 LTS-034 chr6 29910769 29911023 255 * character(0) NA 0 NA 1.984 1 NA NA NA NA NA LTS-034 chr6 29911024 31649188 1738165 * character(0) 0.397557450423935 198 0.0580208111454016 1.55108356866892 4407 0.466070764938965 5 3 2 -6.76325430446325 LTS-034 chr6 31649189 31650839 1651 * character(0) NA 0 NA 0.858 1 NA NA NA NA NA LTS-034 chr6 31650840 31947308 296469 * character(0) 0.320237615670615 7 0.0279335947254505 1.04674514719245 1745 0.210949789751729 3 2 1 -7.77016035525255 LTS-034 chr6 31947309 31976586 29278 * character(0) 0.326 1 NA 1.60677031834026 100 0.520363217746833 5 5 0 -5.76445089221263 LTS-034 chr6 31976587 31977288 702 * character(0) NA 0 NA 2.101 1 NA NA NA NA NA LTS-034 chr6 31977289 31996756 19468 * character(0) NA 0 NA 2.31757297398092 49 0.725769995166757 7 NA NA -5.76443843563045 LTS-034 chr6 31996757 31997008 252 * character(0) NA 0 NA 1.381 1 NA NA NA NA NA LTS-034 chr6 31997009 32013771 16763 * character(0) 0.373931455795064 3 0.0614898365585728 1.30262059306542 133 0.449649095735738 3 2 1 -6.76422477795936 LTS-034 chr6 32013772 32411035 397264 * character(0) 0.411167451454767 74 0.0480548884771688 1.60320654512758 1386 0.363542404995399 5 3 2 -6.74119595093274 LTS-034 chr6 32411036 32411523 488 * character(0) 0.377 1 NA 1.71652870487206 9 0.0796823554984275 5 5 0 -5.76448754242794 LTS-034 chr6 32411524 32427927 16404 * character(0) 0.3765344263254 2 0.0197989898732233 1.88764600148985 23 0.408304011746034 8 5 3 -6.78454316403404 LTS-034 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 8.28 1 NA NA NA NA NA LTS-034 chr6 32485401 32497964 12564 * HLA-DRB5 0.254145413420864 7 0.136768312955053 6.16313049628684 57 7.81399742008389 20 15 5 -6.73334246857327 LTS-034 chr6 32497965 32634306 136342 * c(HLA-DQA1, HLA-DRB5) 0.293096643444542 40 0.0641409505578265 2.20351350991248 223 3.13804875780844 14 10 4 -6.73700501225196 LTS-034 chr6 32634307 32634313 7 * character(0) 0.356 1 NA 1.079 1 NA NA NA NA NA LTS-034 chr6 32634314 33035512 401199 * character(0) 0.368522534999987 53 0.0828027321580042 1.48874484201472 801 1.28992716689819 3 2 1 -6.75559525252312 LTS-034 chr6 33035513 33054760 19248 * character(0) 0.26893867289795 39 0.068913899222674 2.56078299832482 163 18.7072435493802 19 14 5 -6.73331673079005 LTS-034 chr6 33054761 39284594 6229834 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-034 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, KCNK16, UQCC2, KCNK5, KCNK17, RNF8) 0.407876808480965 161 0.0640335073388285 1.5769538592627 8180 0.805781585878668 5 3 2 -6.7445458113733 LTS-034 NA NA NA NA LTS-034 chr6 39284595 41555219 2270625 * c(APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MOCS1, NFYA, TREM2, TREM1, LRFN2, TDRG1, TREML2, KCNK16, NCR2) 0.410219495014415 19 0.0422399162678596 1.6886401666145 1257 0.393234272006175 5 3 2 -6.74423974954548 LTS-034 chr6 41555220 41555299 80 * FOXP4 NA 0 NA 1.781 1 NA NA NA NA NA LTS-034 chr6 41555300 41659309 104010 * c(MIR4641, FOXP4, MDFI, TFEB) 0.345207501338899 9 0.0263744404890627 1.9325837318453 241 0.505434599704202 6 4 2 -6.73997594916859 LTS-034 chr6 41659310 41691190 31881 * TFEB NA 0 NA 1.002 1 NA NA NA NA NA LTS-034 chr6 41691191 41691296 106 * TFEB 0.253 1 NA 0.870666667788798 3 0.121527774603175 2 2 0 -5.76448222749781 LTS-034 chr6 41691297 41748253 56957 * c(FRS3, PGC, TFEB) NA 0 NA 1.03492833736848 127 0.221251566588884 3 NA NA -5.76477520336144 LTS-034 chr6 41748254 41751238 2985 * PRICKLE4 NA 0 NA 1.481 1 NA NA NA NA NA LTS-034 chr6 41751239 41754576 3338 * c(TOMM6, PRICKLE4) 0.492 1 NA 1.21839294776206 39 0.236760081163165 4 4 0 -5.76480350960713 LTS-034 chr6 41754577 44797088 3042512 * c(LINC01512, TOMM6, MIR4647, MIR4642, DNPH1, CNPY3, SLC22A7, CAPN11, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, MRPL2, PEX6, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, PRPH2, C6orf132, MRPL14, NA NA NA NA NA NA NA NA NA LTS-034 DLK2, SRF, TBCC, BYSL, VEGFA, TTBK1, SUPT3H, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.460191713778739 96 0.0322102672418202 1.34025827122145 5606 0.298163820605185 4 2 2 -7.001358243041 LTS-034 NA NA NA NA LTS-034 chr6 44797089 44797655 567 * SUPT3H NA 0 NA 1.34313592228265 11 0.153750328898392 4 NA NA -5.76441093696775 LTS-034 chr6 44797656 44899345 101690 * SUPT3H NA 0 NA 0.864 1 NA NA NA NA NA LTS-034 chr6 44899346 44982593 83248 * SUPT3H 0.259 1 NA 1.04516111997205 33 0.196262974865435 3 3 0 -5.76463027757875 LTS-034 chr6 44982594 47548672 2566079 * c(ANKRD66, RCAN2, ADGRF5, TDRD6, ENPP4, CD2AP, ADGRF1, TNFRSF21, MEP1A, CYP39A1, CLIC5, ENPP5, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27) 0.333515191793054 31 0.0377159160379361 1.10260052550699 1424 0.271204241306506 3 2 1 -7.0567767236291 LTS-034 chr6 47548673 47580292 31620 * CD2AP NA 0 NA 1.0456468755796 32 0.198445427515005 3 NA NA -5.76448619330414 LTS-034 chr6 47580293 47626833 46541 * c(ADGRF2, CD2AP) 0.463 1 NA 0.777759436546725 71 0.203702214897445 2 2 0 -5.76460831895653 LTS-034 chr6 47626834 57244849 9618016 * c(MIR5685, MLIP-IT1, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, OPN5, ADGRF4, FAM83B, ADGRF2, ICK, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, PTCHD4, MIR133B, MUT, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, LRRC1, PRIM2, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, NA NA NA NA NA NA NA NA NA LTS-034 CRISP2, LOC730101, GSTA7P, COL21A1, TFAP2D, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.437362442126313 124 0.0764471207685427 0.765288753553594 5360 0.199321405599886 2 1 1 -6.73325363092191 LTS-034 NA NA NA NA LTS-034 chr6 57244850 57246786 1937 * PRIM2 NA 0 NA 0.941 1 NA NA NA NA NA LTS-034 chr6 57246787 57254955 8169 * PRIM2 0.473604416507352 5 0.00653452370108179 1.12647364749565 11 0.234177399732456 4 2 2 -12.5118697110119 LTS-034 chr6 57254956 57372365 117410 * PRIM2 0.075 1 NA 1.15263002237501 5 0.583689557898717 3 3 0 -5.7658982544244 LTS-034 chr6 57372366 57512678 140313 * PRIM2 0.354319476300461 36 0.0685796200464415 1.26293904165073 82 0.612352820409652 3 2 1 -6.74465576487758 LTS-034 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.781049801682364 19 0.101836585068823 2 NA NA -5.78898871303723 LTS-034 chr6 62390154 62407067 16914 * KHDRBS2 0.425 1 NA 1.20507299345953 23 0.207203962832371 4 4 0 -5.76758564587089 LTS-034 chr6 62407068 73951866 11544799 * c(KHDC1L, MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.36475490610779 45 0.0783493407242154 1.06662073394337 2696 0.313331517209155 3 2 1 -6.73866381772182 LTS-034 chr6 73951867 73952150 284 * KHDC1 NA 0 NA 0.922 1 NA NA NA NA NA LTS-034 chr6 73952151 74533741 581591 * c(MB21D1, CD109, KHDC3L, EEF1A1, MTO1, SLC17A5, DPPA5, NA, OOEP, DDX43, KHDC1) 0.347146953420967 20 0.132935045476313 0.962838066419428 792 0.240105797847521 3 2 1 -6.79317294112214 LTS-034 chr6 74533742 85445442 10911701 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.360502268093456 50 0.0749791835057149 1.08599085072517 3747 0.34357865063331 3 2 1 -6.76830119610933 LTS-034 chr6 85445443 85445448 6 * TBX18 NA 0 NA 0.88 1 NA NA NA NA NA LTS-034 chr6 85445449 88776512 3331064 * c(SYNCRIP, SLC35A1, CGA, CFAP206, C6orf163, ZNF292, ORC3, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, AKIRIN2, RARS2, SMIM8, SNX14, LINC01590, SNORD50B, SPACA1, TBX18) 0.351958559713176 29 0.0438516307249956 1.00783316532454 1464 0.232078046515831 3 2 1 -6.8442146282257 LTS-034 chr6 88776513 88849545 73033 * SPACA1 NA 0 NA 1.708 1 NA NA NA NA NA LTS-034 chr6 88849546 88855099 5554 * CNR1 0.327 1 NA 1.56381030844379 114 0.285296434167251 5 5 0 -5.76452152697881 LTS-034 chr6 88855100 89319993 464894 * c(CNR1, RNGTT) NA 0 NA 0.994 1 NA NA NA NA NA LTS-034 chr6 89319994 121624921 32304928 * c(LIN28B-AS1, TRAPPC3L, TSTD3, LOC100287632, MIR2113, LOC100422737, MIR4464, MIR4643, LOC100996634, FUT9, TRAF3IP2, PNRC1, ASCC3, BVES, SEC63, GTF3C6, KLHL32, NUS1, SLC16A10, COL10A1, PM20D2, SRSF12, BVES-AS1, AIM1, EPHA7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, ANKRD6, FOXO3, CDK19, MDN1, TSPYL4, UFL1, BRD7P3, FRK, VGLL2, LACE1, FYN, MMS22L, FAM26E, MCM9, NA NA NA NA NA NA NA NA NA LTS-034 SCML4, GABRR1, GABRR2, ASF1A, PNISR, AMD1, FBXL4, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, RSPH4A, KPNA5, LINC00222, CEP85L, LIN28B, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, C6orf203, CDC40, RWDD1, UBE2J1, COQ3, PLN, POU3F2, SOBP, QRSL1, PREP, PDSS2, GOPC, LYRM2, HACE1, BEND3, RRAGD, PRDM13, REV3L, BACH2, ROS1, FAM229B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PRDM1, POPDC3, TSG1, TRAF3IP2-AS1, MICAL1, SIM1, SMPD2, MAP3K7, MIR548B, NR2E1, TSPYL1, MCHR2-AS1, TPI1P3, METTL24, FAM184A, MANEA, GPR63, ARMC2, RPF2, MCHR2, FAXC, GJA10, RTN4IP1, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, CCNC, WASF1, MFSD4B, FHL5, ATG5, ZBTB24, FIG4, CASP8AP2) 0.348924074930586 258 0.0725229674459531 1.03995258467915 13504 0.253430654468871 3 2 1 -6.84441836844014 LTS-034 NA NA NA NA LTS-034 chr6 121624922 121625458 537 * TBC1D32 NA 0 NA 1.346 1 NA NA NA NA NA LTS-034 chr6 121625459 125597023 3971565 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, TBC1D32, GJA1, HSF2, HDDC2, PKIB, SERINC1, TPD52L1, RNF217-AS1) 0.352584124495649 38 0.0607834869860633 1.12214993406315 1341 0.288182899845756 3 2 1 -6.83799811033078 LTS-034 chr6 125597024 125614100 17077 * HDDC2 0.476 1 NA 0.919084962986964 20 0.430402272054265 3 3 0 -5.76551853619466 LTS-034 chr6 125614101 127440396 1826296 * c(MIR5695, NCOA7, HINT3, HEY2, CENPW, HDDC2, TRMT11, LOC643623, RSPO3) 0.3741257815503 7 0.0487910998909784 1.10534549175772 443 0.517903983270608 3 2 1 -6.78790239143786 LTS-034 chr6 127440397 150210294 22769898 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, RAET1E, CTGF, LOC153910, ZC2HC1B, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEBP2, FUCA2, TMEM244, SHPRH, CCDC28A, NA NA NA NA NA NA NA NA NA LTS-034 MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, ARG1, HMGA1P7, SUMO4, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, RPS12, PERP, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, TCF21, TNFAIP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 KATNBL1P6, STXBP5-AS1, UTRN, OR2A4, EPM2A, ADGB, RNF146, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, RSPO3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.444663098956342 176 0.0476549380115337 0.750421387198545 11047 0.212300930585453 2 1 1 -6.84720733224466 LTS-034 NA NA NA NA LTS-034 chr6 150210295 151907280 1696986 * c(RAET1E-AS1, RAET1E, RAET1L, MTHFD1L, RAET1G, IYD, RMND1, PLEKHG1, ZBTB2, RAET1K, ULBP3, ARMT1, CCDC170, ULBP2, ULBP1, PPP1R14C, AKAP12) 0.453009481030944 36 0.0381998400229344 0.812618800381579 1187 0.60240552119345 2 1 1 -6.83180563409046 LTS-034 chr6 151907281 151914206 6926 * CCDC170 NA 0 NA 1.261 1 NA NA NA NA NA LTS-034 chr6 151914207 152443031 528825 * c(ESR1, SYNE1, CCDC170) 0.378753319355747 13 0.045506691533872 1.00785035745646 253 0.363698063315992 3 2 1 -6.8352652485963 LTS-034 chr6 152443032 153309782 866751 * c(SYNE1, FBXO5, MTRF1L, VIP, MYCT1) 0.425009784856232 13 0.127054853891679 0.806062051610767 1196 0.196933423067297 2 1 1 -6.77682929700561 LTS-034 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.506 1 NA NA NA NA NA LTS-034 chr6 153309882 170890384 17580503 * c(HGC6.3, LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, MIR4644, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, LOC154449, DACT2, C6orf118, OSTCP1, SCAF8, WDR27, IPCEF1, TIAM2, LINC01558, RGS17, DLL1, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, KIF25, C6orf120, ACAT2, DKFZp451B082, TCP10L2, LINC00242, LPA, GTF2H5, NA NA NA NA NA NA NA NA NA LTS-034 MAS1, MAP3K4, AFDN, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, PDCD2, SNX9, MPC1, PLG, UNC93A, MTRF1L, PHF10, ERMARD, PSMB1, AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SMOC2, AFDN-AS1, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TBP, TCP1, TCP10, TCTE3, DYNLT1, THBS2, TMEM242, LOC729603, EZR, ZDHHC14, FRMD1, AGPAT4-IT1, LINC00574, LPAL2, RSPH3, TTLL2, FAM120B, FNDC1, SERAC1, RNASET2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.435291073502497 228 0.0731975849871296 0.761051108912815 8661 0.549771533626288 2 1 1 -6.73472906235351 LTS-034 NA NA NA NA LTS-034 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.723405027524038 45 0.157116337261099 2 NA NA -5.76464890443912 LTS-034 chr7 193047 286402 93356 * FAM20C 0.447 1 NA 0.983411677535949 71 0.195083301610887 3 3 0 -5.77244334075318 LTS-034 chr7 286403 5926027 5639625 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, RNF216, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, NA NA NA NA NA NA NA NA NA LTS-034 MAFK, MICALL2, FBXL18, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.35520144709699 182 0.0608375679292321 1.0396949027085 5356 0.264543175321121 3 2 1 -6.75345288281013 LTS-034 NA NA NA NA LTS-034 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.742 1 NA NA NA NA NA LTS-034 chr7 5937950 6017391 79442 * c(RSPH10B, CCZ1, PMS2) 0.373934077691133 3 0.030199337741083 0.652348269063579 134 0.292288736869588 3 2 1 -6.97988677477209 LTS-034 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.99 1 NA NA NA NA NA LTS-034 chr7 6018171 6199194 181024 * c(ANKRD61, EIF2AK1, PMS2, AIMP2, USP42) 0.402543563824789 5 0.0948656945370665 0.97812966955846 385 0.188992800065853 3 2 1 -6.86841652543017 LTS-034 chr7 6199195 6369693 170499 * c(USP42, FAM220A, CYTH3) NA 0 NA 0.748583324375933 145 0.147985130828608 2 NA NA -5.7664838917013 LTS-034 chr7 6369694 6369809 116 * FAM220A NA 0 NA 0.888 1 NA NA NA NA NA LTS-034 chr7 6369810 6825728 455919 * c(KDELR2, DAGLB, GRID2IP, PMS2CL, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, FAM220A) 0.3361191181282 17 0.0541046779536722 1.01203276611103 788 0.270895504426928 3 2 1 -6.85879402787973 LTS-034 chr7 6825729 6826551 823 * RSPH10B2 NA 0 NA 2.312 1 NA NA NA NA NA LTS-034 chr7 6826552 6863802 37251 * c(CCZ1B, RSPH10B2) 0.33 1 NA 1.63013574335418 66 0.467584307245532 5 5 0 -5.76442168179925 LTS-034 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.964 1 NA NA NA NA NA LTS-034 chr7 6864270 21891242 15026973 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, MACC1-AS1, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, COL28A1, ABCB5, MACC1, ITGB8, AGMO, MEOX2, NDUFA4, MIOS, TMEM106B, C1GALT1, ANKMY2, RPA3, SP4, TWIST1, UMAD1, ISPD, SCIN, DNAH11, PHF14, HDAC9) 0.346112416896031 78 0.0536341577460006 1.0456939798106 4531 0.262844465632779 3 2 1 -6.79549661799857 LTS-034 chr7 21891243 25268014 3376772 * c(LOC100506178, KLHL7-AS1, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, C7orf31, DFNA5, STEAP1B, RPS2P32, OSBPL3, TRA2A, FAM221A, IL6, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SNORD93, FAM126A, DNAH11, CCDC126, RAPGEF5) 0.421657983261211 56 0.0908510626487967 1.29244100899816 2106 0.452915147944367 4 2 2 -6.77373642343398 LTS-034 chr7 25268015 25268094 80 * NPVF 0.436 1 NA 0.761 1 NA NA NA NA NA LTS-034 chr7 25268095 30876355 5608261 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR550B1, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, RNU6-16P, HOXA10-AS, NOD1, HIBADH, INMT, CHN2, CBX3, CRHR2, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, C7orf71, SNX10, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC401320, MIR148A, LOC441204, DPY19L2P3, MIR196B, CPVL, FKBP14, NPVF, NA NA NA NA NA NA NA NA NA LTS-034 WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, TAX1BP1, SKAP2, CREB5, NFE2L3, SCRN1, KIAA0087, TRIL) 0.359700849893909 84 0.0598837214736441 1.03572180563678 3256 0.252240283998738 3 2 1 -6.75882916084153 LTS-034 NA NA NA NA LTS-034 chr7 30876356 31747413 871058 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, NEUROD6, FAM188B) 0.369167469602662 6 0.0463637789659126 1.18541587272139 644 0.29139535008009 3 2 1 -6.832011324809 LTS-034 chr7 31747414 34989515 3242102 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, BMPER, AVL9, DPY19L1, LSM5, KBTBD2, BBS9, NPSR1, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, RP9, MIR550A2) 0.359946251389477 39 0.0515454413466092 1.08908476143368 1429 0.772723238837068 3 2 1 -6.73564757135181 LTS-034 chr7 34989516 34994303 4788 * DPY19L1 NA 0 NA 0.788 1 NA NA NA NA NA LTS-034 chr7 34994304 38299826 3305523 * c(MIR1200, AOAH-IT1, DPY19L1, KIAA0895, AOAH, GPR141, LOC401324, TARP, NME8, ANLN, EPDR1, DPY19L2P1, TBX20, HERPUD2, SFRP4, EEPD1, STARD3NL, ELMO1, SEPT7) 0.34697452307694 34 0.0705654776148794 0.975419719349516 1373 0.275952129567114 3 2 1 -6.9251227756204 LTS-034 chr7 38299827 38301699 1873 * TARP NA 0 NA 1.267 1 NA NA NA NA NA LTS-034 chr7 38301700 38402496 100797 * c(TRG-AS1, TARP) 0.367462675682715 8 0.0601919548492274 1.35969642213474 94 0.904255947556539 3 2 1 -6.74597978226887 LTS-034 chr7 38402497 38402580 84 * TRG-AS1 NA 0 NA 1.014 1 NA NA NA NA NA LTS-034 chr7 38402581 57532512 19129932 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NA NA NA NA NA NA NA NA NA LTS-034 NPC1L1, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.354654449206355 222 0.0635952504220105 1.03905324908994 8907 0.387443524308858 3 2 1 -6.76502902930506 LTS-034 NA NA NA NA LTS-034 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.48873832049197 13 0.384751301625562 4 NA NA -5.76443668425778 LTS-034 chr7 62758725 63023528 264804 * ZNF733P 0.443 1 NA 1.06232401338046 7 0.608734049365684 3 3 0 -5.76441468604087 LTS-034 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.363081242553018 16 0.039821267349663 1.02401759986601 609 0.281010406411159 3 2 1 -6.74954208404663 LTS-034 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.721 1 NA NA NA NA NA LTS-034 chr7 64643340 65159972 516633 * c(ZNF92, LOC441242, INTS4P2) 0.387560733713126 5 0.0352916420700426 0.632250687600754 99 0.209180128402117 2 1 1 -8.01438373171422 LTS-034 chr7 65159973 65159983 11 * c(LOC441242, INTS4P2) 0.468 1 NA 0.89 1 NA NA NA NA NA LTS-034 chr7 65159984 74015810 8855827 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1B, SNORA22, STX1A, MIR590, NA NA NA NA NA NA NA NA NA LTS-034 GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.338842676604364 85 0.0967506975633333 1.0413025098508 3539 0.363836430262101 3 2 1 -6.77378904807609 LTS-034 NA NA NA NA LTS-034 chr7 74015811 74016574 764 * GTF2IRD1 NA 0 NA 1.73 1 NA NA NA NA NA LTS-034 chr7 74016575 74152298 135724 * c(GTF2I, GTF2IRD1) NA 0 NA 1.49970198763288 56 0.342683434620987 5 NA NA -5.77053451729768 LTS-034 chr7 74152299 74152376 78 * GTF2I 0.338 1 NA 0.441 1 NA NA NA NA NA LTS-034 chr7 74152377 75443174 1290798 * c(POM121C, CCL26, NSUN5P1, GTF2I, GTF2IP1, HIP1, TRIM73, NA, GTF2IRD2B, STAG3L2, SPDYE5, PMS2P5, PMS2P3, STAG3L1, CCL24, NCF1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.35737961747451 7 0.0416052881254294 1.05789258844652 568 0.273388908997573 3 2 1 -6.73612832005752 LTS-034 chr7 75443175 75508279 65105 * character(0) NA 0 NA 0.765 1 NA NA NA NA NA LTS-034 chr7 75508280 75659896 151617 * c(MIR4651, STYXL1, POR, RHBDD2, SNORA14A, TMEM120A) 0.5 1 NA 0.739927465471287 258 0.142489210723775 2 2 0 -5.76919846194476 LTS-034 chr7 75659897 75677358 17462 * STYXL1 NA 0 NA 1.006 1 NA NA NA NA NA LTS-034 chr7 75677359 77539744 1862386 * c(PMS2P9, LOC100133091, APTR, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, YWHAG, ZP3, UPK3B, TMEM60) 0.364479214838282 19 0.0662228649052373 1.0050963450733 1237 0.272509131535182 3 2 1 -6.7759395670908 LTS-034 chr7 77539745 77539748 4 * PHTF2 NA 0 NA 1.244 1 NA NA NA NA NA LTS-034 chr7 77539749 86507993 8968245 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, PHTF2, CACNA2D1, CD36, SEMA3E, MAGI2) 0.377935383096806 31 0.0606777669154812 1.1153988379568 2255 0.266198778684826 3 2 1 -6.98160790732386 LTS-034 chr7 86507994 100320992 13812999 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-034 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.349824202955849 167 0.0732020890963018 1.02141028570217 12051 0.240763709517319 3 2 1 -6.92540531188198 LTS-034 NA NA NA NA LTS-034 chr7 100320993 100321091 99 * EPO NA 0 NA 1.095 1 NA NA NA NA NA LTS-034 chr7 100321092 100344353 23262 * c(EPO, ZAN) NA 0 NA 0.522518561545981 38 0.229014508475906 1 NA NA -5.76737259630283 LTS-034 chr7 100344354 100344359 6 * ZAN 0.342 1 NA 1.18 1 NA NA NA NA NA LTS-034 chr7 100344360 100465439 121080 * c(EPHB4, SLC12A9, TRIP6, ZAN) 0.364628188323477 8 0.0300273684684965 1.10874795295765 469 4.96025423929155 14 9 5 -6.74208041479272 LTS-034 chr7 100465440 100549499 84060 * c(UFSP1, ACHE, SRRT, TRIP6) NA 0 NA 1.0463712168902 230 0.221069796548261 3 NA NA -5.76455560166551 LTS-034 chr7 100549500 100549573 74 * character(0) 0.264 1 NA 2.789 1 NA NA NA NA NA LTS-034 chr7 100549574 100550726 1153 * character(0) 0.373179950985676 36 0.107731412052647 2.04780095756039 60 0.534371815317434 11 7 4 -6.73428706562576 LTS-034 chr7 100550727 100550766 40 * character(0) 0.068 1 NA 0.178 1 NA NA NA NA NA LTS-034 chr7 100550767 100551101 335 * character(0) 0.255833347181293 8 0.081282136501729 0.756996536958675 40 0.487130814184655 20 15 5 -6.73687000827798 LTS-034 chr7 100551102 100552867 1766 * character(0) 0.341428614077069 65 0.084231132331497 2.05197290052659 101 0.718873751154547 9 6 3 -6.73356720912913 LTS-034 chr7 100552868 100552894 27 * character(0) NA 0 NA 1.077 1 NA NA NA NA NA LTS-034 chr7 100552895 100681762 128868 * c(MUC12, MUC17) 0.363643397873842 40 0.0682813513978593 1.19924775703166 341 0.380223102161915 3 2 1 -6.74268941504642 LTS-034 chr7 100681763 100687115 5353 * MUC17 NA 0 NA 1.20305189116103 81 0.120695973011673 4 NA NA -5.76745812840339 LTS-034 chr7 100687116 100691170 4055 * MUC17 NA 0 NA 0.82 1 NA NA NA NA NA LTS-034 chr7 100691171 100692680 1510 * MUC17 0.344 1 NA 0.963951888209334 13 0.17083722947402 3 3 0 -5.76468373934553 LTS-034 chr7 100692681 105429225 4736545 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CLDN15, POLR2J2, DNAJC2, MOGAT3, DPY19L2P2, NAT16, SLC26A5, LHFPL3, ORC5, SERPINE1, FIS1, POLR2J, PUS7, ALKBH4, POLR2J3, KMT2E, RELN, PSMC2, RINT1, LHFPL3-AS1, IFT22, SRPK2, LHFPL3-AS2, NA NA NA NA NA NA NA NA NA LTS-034 SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.360328419047194 64 0.0606649659625561 1.02133398414679 3905 0.334732438675571 3 2 1 -6.76588797715095 LTS-034 NA NA NA NA LTS-034 chr7 105429226 105516132 86907 * ATXN7L1 NA 0 NA 1.181 1 NA NA NA NA NA LTS-034 chr7 105516133 106297789 781657 * c(NAMPT, CCDC71L, ATXN7L1, CDHR3, SYPL1) 0.322 1 NA 1.2352613555152 325 0.317552752644739 4 4 0 -5.80284436606606 LTS-034 chr7 106297790 127347766 21049977 * c(MIR3666, AASS, FAM3C, COG5, CFTR, DUS4L, ZNF277, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, TFEC, LAMB4, HYAL4, TSPAN12, POT1, HYALP1, TES, HBP1, SND1, GPR22, SLC26A4-AS1, LSMEM1, GPR37, GRM8, MDFIC, FSCN3, ST7-OT4, IFRD1, KCND2, RNF148, ARF5, FEZF1, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, LMOD2, NDUFA5, NRCAM, PNPLA8, PAX4, TAS2R16, NA NA NA NA NA NA NA NA NA LTS-034 WNT16, LSM8, SLC26A4, PIK3CG, GPR85, ING3, LRRN3, PPP1R3A, PRKAR2B, BCAP29, ANKRD7, PTPRZ1, TMEM168, SLC13A1, SPAM1, MIR592, TMEM229A, WNT2, GCC1, ST7, CBLL1, CPED1, CAPZA2, IMMP2L, CTTNBP2, CAV1, CAV2, WASL, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, DOCK4) 0.357991149516166 127 0.0642506798117185 1.02651224278104 8026 0.252790025023169 3 2 1 -6.91840671852502 LTS-034 NA NA NA NA LTS-034 chr7 127347767 127361302 13536 * SND1 NA 0 NA 1.454 1 NA NA NA NA NA LTS-034 chr7 127361303 128312464 951162 * c(MGC27345, SND1, SND1-IT1, HILPDA, FAM71F2, IMPDH1, LEP, PRRT4, LINC01000, MIR129-1, RBM28, METTL2B, LRRC4, MIR593) 0.266273522660964 8 0.0386557609825865 1.30446032112343 701 0.280140284088357 4 3 1 -6.84651618299998 LTS-034 chr7 128312465 128312482 18 * FAM71F2 NA 0 NA 0.993 1 NA NA NA NA NA LTS-034 chr7 128312483 128399955 87473 * c(FAM71F2, CALU, FAM71F1) 0.326286648070491 4 0.0511142511112768 0.976483169368441 161 0.191778288340683 3 2 1 -6.99789687340163 LTS-034 chr7 128399956 128407466 7511 * CALU NA 0 NA 0.714 1 NA NA NA NA NA LTS-034 chr7 128407467 128585974 178508 * c(LOC100130705, FLNC, IRF5, KCP, OPN1SW, CCDC136, CALU, ATP6V1F) 0.449722359834677 11 0.0656982080840455 0.790413696937667 741 0.185196527226111 2 1 1 -6.75475534746418 LTS-034 chr7 128585975 131099598 2513624 * c(SMKR1, RNA5SP244, TSGA13, CPA1, CPA2, KLF14, SSMEM1, KLHDC10, AHCYL2, TNPO3, COPG2, TPI1P2, MESTIT1, TSPAN33, IRF5, LINC-PINT, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, MIR335, NRF1, CPA4, ZC3HC1, STRIP2, NA, SMO, UBE2H, TMEM209, CPA5, CEP41) 0.363168795381469 37 0.076963740926604 1.03810340913101 2098 0.266138632310722 3 2 1 -6.742166028667 LTS-034 chr7 131099599 131113778 14180 * MKLN1 NA 0 NA 1.228 1 NA NA NA NA NA LTS-034 chr7 131113779 131808439 694661 * c(MKLN1, PODXL, PLXNA4) 0.456608812652622 9 0.0281291663580704 1.33317649051092 301 0.323156413687925 4 2 2 -6.97939057136393 LTS-034 chr7 131808440 140706031 8897592 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, MIR4468, C7orf55-LUC7L2, CHRM2, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, MKRN1, UBN2, SLC13A4, DENND2A, FLJ40288, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, AKR1B15, NDUFB2, CNOT4, ATP6V0A4, LUC7L2, MRPS33, CHCHD3, TMEM140, ZC3HAV1, AKR1B10, MIR490, PTN, KIAA1549, EXOC4, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, TBXAS1, NA NA NA NA NA NA NA NA NA LTS-034 LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, ADCK2, PLXNA4, DGKI, ZC3HAV1L) 0.354649536567697 128 0.0674930716041797 1.04013950464607 5978 0.259039709973444 3 2 1 -6.76256257274913 LTS-034 NA NA NA NA LTS-034 chr7 140706032 140774467 68436 * c(TMEM178B, MRPS33) 0.279 1 NA 0.991434414778654 23 0.112862678462472 3 3 0 -5.77833582350572 LTS-034 chr7 140774468 142099651 1325184 * c(MOXD2P, TMEM178B, OR9A4, PRSS37, PRSS58, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, NA, MGAM, MGAM2) 0.288237535519834 22 0.146638820654504 1.03582193016621 1468 0.345886374324835 3 2 1 -6.87801012317611 LTS-034 chr7 142099652 142099932 281 * character(0) NA 0 NA 1.453 1 NA NA NA NA NA LTS-034 chr7 142099933 142470691 370759 * c(MTRNR2L6, PRSS1) 0.302355461692504 58 0.0983203155635222 1.34892342630186 356 0.332837071334843 4 3 1 -6.75745720270011 LTS-034 chr7 142470692 142480002 9311 * PRSS3P2 0.485 1 NA 1.3407329844919 5 1.17452641519891 4 4 0 -5.76441048215249 LTS-034 chr7 142480003 143840031 1360029 * c(CLCN1, OR9A2, C7orf34, TMEM139, OR2A14, OR6B1, OR2F2, PRSS3P2, LOC154761, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR6V1, OR2A12, GSTK1, KEL, OR2A25, OR2A5, CTAGE15, OR2A2, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B, TCAF1) 0.452512523787065 72 0.0479176046040066 1.39100787460919 1735 1.89148874756038 4 2 2 -6.78595026441629 LTS-034 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.436 1 NA NA NA NA NA LTS-034 chr7 143883365 144015276 131912 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.399 1 NA 0.879893764842706 96 0.421321367008897 2 2 0 -5.773204415463 LTS-034 chr7 144015277 144015487 211 * character(0) NA 0 NA 1.264 1 NA NA NA NA NA LTS-034 chr7 144015488 158930775 14915288 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, NA NA NA NA NA NA NA NA NA LTS-034 CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, VIPR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.443632894792193 237 0.0524687638437303 1.30014359877439 9607 1.07250829165359 4 2 2 -6.75178209608392 LTS-034 NA NA NA NA LTS-034 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 1.24903234624426 19 0.231994492271787 4 NA NA -5.77121175631946 LTS-034 chr8 182757 281022 98266 * ZNF596 0.154 1 NA 0.715882578947865 95 0.105312070774626 2 2 0 -5.78729739318016 LTS-034 chr8 281023 6782271 6501249 * c(LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA6, DEFB1, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, AGPAT5, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.14121374920301 15 0.0879388315548831 0.768865608570599 2107 0.19783188421175 2 2 0 -6.78896303036186 LTS-034 chr8 6782272 7272439 490168 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.273 1 NA 0.779977561062404 47 0.247087364281177 2 2 0 -5.76633815182833 LTS-034 chr8 7272440 10467605 3195166 * c(FAM66E, ZNF705B, DEFB4B, MIR548I3, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, DEFB4A, PRSS55, DEFB107A, FAM86B3P, USP17L8, MIR124-1, FAM90A7P, FAM90A10P, MSRA, DEFB107B, USP17L3, SPAG11A, MIR597, PPP1R3B, TNKS, ERI1, MFHAS1, RP1L1) 0.318058787642843 13 0.148027111168953 0.773333125588735 1169 0.614671052003269 2 1 1 -7.10522097551173 LTS-034 chr8 10467606 10981586 513981 * c(MIR1322, C8orf74, XKR6, PINX1, MIR598, SOX7, RP1L1) 0.093 1 NA 0.804490777840538 475 0.289047144699201 2 2 0 -5.77397799939999 LTS-034 chr8 10981587 39142479 28160893 * c(NAT2, RBPMS-AS1, LOC100128993, FAM66D, FAM66A, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, SMIM18, MIR548O2, LZTS1-AS1, NRG1-IT3, LINC00681, SORBS3, NPM2, DLC1, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CLU, GOT1L1, VPS37A, NKX2-6, SGCZ, UNC5D, LETM2, ADRA1A, CTSB, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, TDH, C8orf48, KCNU1, DPYSL2, DUSP4, NA NA NA NA NA NA NA NA NA LTS-034 EGR3, EIF4EBP1, R3HCC1, HTRA4, ADAM32, LGI3, DMTN, EPHX2, EXTL3, PTK2B, FDFT1, FGFR1, FGL1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, PSD3, LEPROTL1, SLC39A14, DEFB109P1, DEFB130, NEIL2, LOC254896, ADGRA2, GATA4, FGF20, GFRA2, LSM1, ADAMDEC1, GNRH1, XKR6, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, CNOT7, PURG, NRG1, LOC340357, USP17L2, FAM90A25P, LOC389641, NUGGC, C8orf86, LOC392196, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 USP17L7, LOXL2, LPL, MIR320A, ASAH1, MSR1, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, SCARA3, PDGFRL, SARAF, ATP6V1B2, PNOC, C8orf58, KCTD9, WHSC1L1, PIWIL2, ELP3, PPP2CB, INTS10, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, TEX15, MTUS1, KIAA1456, CCAR2, PLEKHA2, DEFB135, DEFB136, DEFB134, LINC00589, MBOAT4, SH2D4A, BLK, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, BNIP3L, STAR, STC1, TACC1, LOC728024, ZNF705D, FAM90A2P, LOC729732, WRN, DUSP26, HMBOX1, FZD3, RNF122, NUDT18, TUSC3, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TM2D2, PLPP5, MAK16, FUT10, FAM86B1, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, ASH2L, MTMR7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LONRF1, CHMP7, BAG4, ENTPD4, PHYHIP) 0.100049262231563 49 0.0573330243426257 0.757137657114741 16934 0.197439649861893 2 2 0 -6.81429518528077 LTS-034 NA NA NA NA LTS-034 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 0.103 1 NA NA NA NA NA LTS-034 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 0.130822979344336 55 0.0381062841128453 0 NA NA -6.89446699726401 LTS-034 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.805 1 NA NA NA NA NA LTS-034 chr8 39442068 42028711 2586644 * c(AP3M2, GPAT4, NKX6-3, IDO2, ADAM2, ANK1, IDO1, GOLGA7, C8orf4, MIR486-1, SFRP1, ZMAT4, KAT6A, GINS4, ADAM18) NA 0 NA 0.785078801749361 1635 0.187917432822164 2 NA NA -5.7951807227864 LTS-034 chr8 42028712 42032742 4031 * PLAT NA 0 NA 1.925 1 NA NA NA NA NA LTS-034 chr8 42032743 42039573 6831 * PLAT NA 0 NA 1.75169823352929 43 0.32041626614482 5 NA NA -5.76456009335842 LTS-034 chr8 42039574 42040224 651 * PLAT NA 0 NA 3.142 1 NA NA NA NA NA LTS-034 chr8 42040225 42692419 652195 * c(CHRNB3, SMIM19, DKK4, IKBKB, PLAT, POLB, THAP1, SLC20A2, VDAC3, CHRNA6) 0.226447125959179 4 0.026688012290165 3.12735468327534 620 0.784221757747057 14 11 3 -6.79671913417493 LTS-034 chr8 42692420 43058017 365598 * c(MIR4469, HGSNAT, FNTA, THAP1, RNF170, POMK, HOOK3) NA 0 NA 2.87806657621213 556 0.899755427717469 9 NA NA -5.76450425220087 LTS-034 chr8 43058018 43212050 154033 * POTEA NA 0 NA 1.80454166367613 43 0.564665465108463 6 NA NA -5.76596955837691 LTS-034 chr8 47752736 49987965 2235230 * c(LOC100287846, CEBPD, SPIDR, MCM4, C8orf22, LINC00293, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.373 1 NA 1.03074053902694 1079 0.272727012953073 3 3 0 -5.77745175533534 LTS-034 chr8 49987966 56738026 6750061 * c(SBF1P1, LYPLA1, XKR4, PCMTD1, TMEM68, PXDNL, NPBWR1, MRPL15, FAM150A, C8orf22, OPRK1, ATP6V1H, SNTG1, RP1, SOX17, TCEA1, RGS20, TGS1, ST18, RB1CC1) 0.377695597327521 25 0.0979332766053841 1.05232489131725 2049 0.237837671094235 3 2 1 -6.75450857570477 LTS-034 chr8 56738027 56792313 54287 * character(0) NA 0 NA 1.526 1 NA NA NA NA NA LTS-034 chr8 56792314 57080951 288638 * c(SNORD54, LYN, MOS, PLAG1, RPS20) 0.29161032805904 4 0.0388361944582628 1.30214993471564 293 0.221864719558238 4 3 1 -6.77117618818786 LTS-034 chr8 57080952 57125278 44327 * c(PLAG1, CHCHD7) NA 0 NA 0.993 1 NA NA NA NA NA LTS-034 chr8 57125279 61194037 4068759 * c(LINC00968, LINC01606, UBXN2B, CYP7A1, SDR16C5, LINC00588, LOC286177, PENK, IMPAD1, SDCBP, CA8, CHCHD7, NSMAF, FAM110B, TOX) 0.358261437033592 9 0.0511112620770717 1.02179089615257 1026 0.225123909649673 3 2 1 -6.79462984184287 LTS-034 chr8 61194038 61429434 235397 * character(0) NA 0 NA 0.68 1 NA NA NA NA NA LTS-034 chr8 61429435 61653954 224520 * c(CHD7, RAB2A) NA 0 NA 0.771822988793275 123 0.194557758634179 2 NA NA -5.76473124836463 LTS-034 chr8 61653955 61653978 24 * CHD7 NA 0 NA 0.996 1 NA NA NA NA NA LTS-034 chr8 61653979 142266910 80612932 * c(MIR875, C8orf88, STAU2-AS1, TCF24, MIR124-2HG, LINC00861, LOC100130298, C8orf89, LRRC69, FAM83A-AS1, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR1205, MIR1206, MIR1207, MIR1204, MIR2053, MIR2052, MIR1208, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR3610, LINC00967, RRS1-AS1, LINC01592, ASAP1-IT2, C8orf44-SGK3, ZHX1-C8orf76, MIR378D2, MIR4661, MIR4663, MIR4471, MIR4470, C8orf37-AS1, PCAT1, MIR5680, NA NA NA NA NA NA NA NA NA LTS-034 MIR5194, MIR5708, MIR5681A, MIR5681B, LINC00536, HHLA1, FSBP, LINC00534, LOC101241902, YTHDF3-AS1, CDH17, TRIB1, RIDA, NDRG1, CPQ, NCOA2, ARFGEF1, COLEC10, KHDRBS3, POP1, COPS5, WWP1, STMN2, RNF139, ZHX1, ADCY8, MAL2, CSMD3, FBXO32, SLC26A7, CTHRC1, OSR2, C8orf34, COX6C, ZNF572, FAM92A1, NDUFAF6, ABRA, TMEM71, ADHFE1, DCAF4L2, RALYL, CRH, TMEM65, LINC00964, RDH10, BAALC-AS2, ANKRD46, FAM84B, C8orf37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 VPS13B, SLC7A13, TMEM74, FAM91A1, MCMDC2, CLVS1, SBSPON, DECR1, CNBD1, SLC30A8, COL22A1, SNX31, TMEM64, DPYS, E2F5, ERICH5, EXT1, EYA1, FABP4, FABP5, ZHX2, DENND3, EFR3A, RRS1, SULF1, ZFPM2, HEY1, TRAM1, LRRC6, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, PTTG3P, GEM, SNORA72, PABPC1, KCNV1, STAU2, MTBP, AGO2, BHLHE22, ANGPT1, NSMCE2, LINC01591, TRIQK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DPY19L4, FBXO43, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, MRPL13, ATAD2, ASAP1-IT1, LRP12, HAS2, ANXA13, HNF4G, KLHL38, RSPO2, SLC10A5, IL7, IMPA1, EIF3E, CA13, KCNQ3, KCNS2, XKR9, C8orf87, RBM12B, LOC392232, GDF6, LOC401463, C8orf59, SAMD12, MIR124-2, MIR30B, MIR30D, MATN2, MMP16, FER1L6-AS1, MIR2052HG, FLJ46284, FLJ42969, AARD, ASPH, MYBL1, MYC, NBN, NDUFB9, NOV, ODF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 TNFRSF11B, RRM2B, ASAP1, MTERF3, PI15, FAM135B, ZC2HC1A, PHF20L1, LACTB2, RMDN1, ZNF706, KCNK9, UBR5, PDE7A, FAM49B, AZIN1, OTUD6B, ENPP2, ATP6V1C1, PMP2, CHRAC1, GDAP1, POLR2K, POU5F1B, PDP1, CNGB3, ESRP1, TMEM70, TRMT12, OXR1, WDYHV1, ARMC1, UBE2W, LINC00251, SAMD12-AS1, LAPTM4B, RBM12B-AS1, TMEM55A, CHD7, SYBU, INTS8, PKIA, PAG1, GSDMC, C8orf44, JPH1, ENY2, CPA6, SLC45A4, PTK2, ZFAT, PVT1, PEX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAD21, ZFAT-AS1, HAS2-AS1, RPL7, RPL30, ZNF704, LINC01298, SDC2, PRDM14, SNX16, SNHG6, SNORD87, NECAB1, LINC00535, UG0898H09, RAD21-AS1, FABP9, FABP12, DEPTOR, ST3GAL1, SLA, FER1L6, ZBTB10, SNTB1, SPAG1, SQLE, STK3, TAF2, TCEB1, MIR599, TERF1, TG, KLF10, TPD52, TRHR, TRPS1, TTPA, CASC8, LINC00977, OC90, OSGIN2, COL14A1, UQCRB, YWHAZ, CA1, CA2, CA3, DSCC1, DERL1, CALB1, PLEKHF2, ZFAND1, ZFHX4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NIPAL2, CSPP1, BAALC, GRHL2, VCPIP1, PREX2, SLC25A32, DCSTAMP, SLCO5A1, FZD6, CRISPLD1, TRAPPC9, TATDN1, NACAP1, NCALD, UTP23, TRIM55, C8orf76, NUDCD1, FAM83A, LRRCC1, TSPYL5, DNAJC5B, PSKH2, RUNX1T1, EIF3H, RIPK2, GGH, WISP1, CPNE3, TRPA1, MED30, TMEM67, CCNE2, EBAG9, MTDH, MSC, CHMP4C, PKHD1L1, KCNB2, TBC1D31, HPYR1, CYP7B1, TP53INP1, MTFR1, EMC2, RIMS2, MTSS1, PTDSS1, KIAA0196) 0.355588849004432 516 0.0609963135540046 1.05364029053654 29625 0.7045673633086 3 2 1 -6.73909400757342 LTS-034 NA NA NA NA LTS-034 chr8 142266911 142366577 99667 * LINC01300 NA 0 NA 1.924 1 NA NA NA NA NA LTS-034 chr8 142366578 142481339 114762 * c(PTP4A3, GPR20, MROH5) 0.321420185793875 12 0.055850992232308 1.43243982604272 174 0.345127462133335 7 5 2 -6.9134631335053 LTS-034 chr8 142481340 142482876 1537 * MROH5 NA 0 NA 0.942 1 NA NA NA NA NA LTS-034 chr8 142482877 146171437 3688561 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, GLI4, GML, ZNF707, BREA2, FAM83H, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, C8orf82, NA NA NA NA NA NA NA NA NA LTS-034 LRRC24, TONSL, CYHR1, VPS28, HGH1, THEM6, PLEC, EXOSC4, LY6K, SLC39A4, SLURP1, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, LYNX1, MIR661, TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.359470987117176 191 0.0499167805661456 1.04787954946391 6812 0.222005116494192 3 2 1 -6.73810558895355 LTS-034 NA NA NA NA LTS-034 chr8 146171438 146280905 109468 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33, ZNF16) NA 0 NA 0.998127849620646 253 0.161954765019562 3 NA NA -5.77313622358033 LTS-034 chr9 14732 215060 200329 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C, DOCK8) 0.417 1 NA 0.674853204729816 48 0.362226154205877 2 2 0 -5.77863537995501 LTS-034 chr9 215061 2029031 1813971 * c(DMRT2, C9orf66, DMRT1, KANK1, DMRT3, SMARCA2, DOCK8) 0.116 2 0.00848528137423857 0.744999773329382 666 0.178458241031094 2 2 0 -6.76371018509636 LTS-034 chr9 2029032 2729781 700750 * c(KCNV2, VLDLR-AS1, SMARCA2, VLDLR) 0.353276693223942 13 0.0702490989083554 1.02476129897032 370 0.181590784661694 3 2 1 -6.7527713241897 LTS-034 chr9 2729782 2729861 80 * KCNV2 NA 0 NA 1.251 1 NA NA NA NA NA LTS-034 chr9 2729862 4118398 1388537 * c(KCNV2, GLIS3, RFX3, GLIS3-AS1, PUM3) 0.334797365800471 6 0.06093493798033 1.20282822480793 530 0.34415794422499 3 2 1 -6.94902877343302 LTS-034 chr9 4118399 4722759 604361 * c(GLIS3, PLPP6, AK3, SPATA6L, CDC37L1, SLC1A1) 0.342867437665714 19 0.0441352917358454 1.0092105177729 443 0.267770940029954 3 2 1 -6.83753868017417 LTS-034 chr9 4722760 4740961 18202 * AK3 NA 0 NA 0.779 1 NA NA NA NA NA LTS-034 chr9 4740962 8449866 3708905 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, MIR101-2, AK3, PLGRKT, RIC1, PTPRD, RLN1, RLN2, ERMP1, PDCD1LG2, TPD52L3, IL33, TMEM261) 0.116596007292731 5 0.0464144374090649 0.738451809235119 1962 0.183662454415953 2 2 0 -6.81211887900053 LTS-034 chr9 8449867 8451735 1869 * PTPRD NA 0 NA 0.856 1 NA NA NA NA NA LTS-034 chr9 8451736 15191281 6739546 * c(LINC00583, TTC39B, FREM1, LURAP1L, ZDHHC21, LOC389705, LINC01235, NFIB, PTPRD, TYRP1, MPDZ, CER1) 0.0655917127154472 4 0.0333716446503115 0.820949789470164 1220 0.271628896844505 2 2 0 -8.09035910204838 LTS-034 chr9 15191282 36838301 21647020 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, GNE, MIR3152, LOC100506422, MIR4667, MIR4473, MIR4475, MIR4474, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, RRAGA, CCL27, PSIP1, PTENP1, DCTN3, CLTA, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, TTC39B, SAXO1, LINC00961, ATP8B5P, ELAVL2, C9orf72, CCDC171, FAM219A, CCDC107, FANCG, PHF24, NA NA NA NA NA NA NA NA NA LTS-034 DDX58, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, B4GALT1, DNAI1, SIT1, SPINK4, TUSC1, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IL11RA, AQP3, AQP7, ENHO, FAM205BP, FAM221B, OR13J1, HACD4, LINC01242, TMEM215, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, ANKRD18B, MTAP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NDUFB6, NFX1, ACO1, NPR2, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SMU1, MIR31HG, DENND4C, UBAP2, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, GBA2, RMRP, RPS6, CCL19, CCL21, DMRTA1, SH3GL2, HRCT1, LRRC19, NOL6, SNAPC3, SCARNA8, MSMP, TEK, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, MOB3B, CAAP1, IFT74, FAM214B, RECK, HINT2, C9orf24, PIGO, ARHGEF39, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CCIN, ADAMTSL1, LINC00950, PLAA, CD72, RGP1, MELK, RUSC2) 0.263174481296153 57 0.150640576649631 0.760553983815608 11341 0.187819944875161 2 2 0 -7.27351479522955 LTS-034 NA NA NA NA LTS-034 chr9 36838302 44175697 7337396 * c(FAM95C, EBLN3P, MIR4540, MIR4476, FAM201A, TRMT10B, ALDH1B1, FRMPD1, ANKRD18A, ZNF658, FBXO10, LOC286297, IGFBPL1, SPATA31A6, GLIDR, TOMM5, FAM74A1, ZNF658B, AQP7P3, PAX5, EXOSC3, NA, NA, LOC642929, LINC01189, POLR1E, SHB, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, DCAF10, CNTNAP3, ZCCHC7, SLC25A51, GRHPR, ZBTB5) NA 0 NA 0.749243991563189 1442 0.384102605085582 2 NA NA -5.77655100455961 LTS-034 chr9 65602571 66457127 854557 * LOC286297 0.479 1 NA 0.927737814952323 3 0.192007812341061 3 3 0 -5.99815082308532 LTS-034 chr9 66457128 70731724 4274597 * c(FRG1HP, FAM27B, LOC100133920, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.33124697275354 26 0.0973811306947327 1.10574606653554 83 0.428628293430201 3 2 1 -6.8122871416339 LTS-034 chr9 70731725 70862960 131236 * character(0) NA 0 NA 0.648 1 NA NA NA NA NA LTS-034 chr9 70862961 70971798 108838 * c(FOXD4L3, PGM5-AS1) 0.263 1 NA 0.567405161140937 4 0.072811972458747 1 1 0 -6.17072939381984 LTS-034 chr9 70971799 71555492 583694 * c(FAM122A, TMEM252, PGM5, PGM5-AS1, PIP5K1B) 0.448 1 NA 0.775915584015785 238 0.19500766470044 2 2 0 -5.76642334053222 LTS-034 chr9 71555493 117074810 45519318 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, SEC61B, SLC35D2, NA NA NA NA NA NA NA NA NA LTS-034 AKAP2, KIF12, PALM2, WDR31, ZNF618, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, ZNF883, ZNF169, ECM2, ABCA1, LPAR1, S1PR3, AAED1, ZNF367, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, OR13D1, NA, MIR4290HG, PSAT1, UBQLN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, NAA35, RORB, MIR455, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SLC28A3, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.445095136904865 511 0.0582053114299196 0.760725126357255 25874 0.529266204189316 2 1 1 -6.74375616623519 LTS-034 NA NA NA NA LTS-034 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.235 1 NA NA NA NA NA LTS-034 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.220122018643337 39 0.0627968255212519 0 NA NA -5.79945788251556 LTS-034 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.628 1 NA NA NA NA NA LTS-034 chr9 117092173 130127666 13035494 * c(SNORA70C, ASTN2-AS1, LOC100129034, LOC100288842, MIR181A2HG, LOC100505478, MIR4478, RABEPK, ZBTB6, NEK6, CNTRL, RPL35, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, BRINP1, OLFML2A, MEGF9, TMEM268, STOM, TRIM32, ZBTB43, ASTN2, ANGPTL2, RABGAP1, NR5A1, PSMD5-AS1, MORN5, OR1L4, WHRN, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, GGTA1P, GOLGA1, GPR21, CRB2, SCAI, GSN, HSPA5, TNC, ADGRD2, NA NA NA NA NA NA NA NA NA LTS-034 OR1J1, OR1B1, OR1L6, OR5C1, OR1K1, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, NDUFA8, ORM1, ORM2, DEC1, PAPPA, PDCL, PBX3, RAB14, RC3H2, STRBP, PPP6C, CDK5RAP2, PSMB7, PSMD5, PTGS1, ZBTB26, DENND1A, LINC00474, NRON, SNORD90, MIR601, TLR4, TRAF1, C5, MAPKAP1, AKNA, MIR600HG, ARPC5L, GARNL3, MVB12B, MRRF, RBM18, LHX2, TNFSF8, ATP6V1G1, RALGPS1, TNFSF15) 0.440965292359598 124 0.0821519236867527 0.764726468088375 8429 0.181674372338247 2 1 1 -6.73370514730869 LTS-034 NA NA NA NA LTS-034 chr9 130127667 130145688 18022 * GARNL3 NA 0 NA 1.039 1 NA NA NA NA NA LTS-034 chr9 130145689 130541053 395365 * c(SH2D3C, MIR3911, PTRH1, TTC16, SNORA65, TOR2A, CFAP157, SLC2A8, RPL12, FAM129B, STXBP1, ZNF79, GARNL3, LRSAM1) 0.383591810246412 25 0.0565914304466675 1.03080100746952 990 0.293162196644242 3 2 1 -6.83441877507072 LTS-034 chr9 130541054 130548202 7149 * MIR3960 NA 0 NA 0.334 1 NA NA NA NA NA LTS-034 chr9 130548203 130915382 367180 * c(SLC25A25-AS1, MIR3960, MIR4672, CDK9, SLC25A25, PIP5KL1, ENG, AK1, NAIF1, FPGS, ST6GALNAC4, ST6GALNAC6, PTGES2-AS1, LCN2, FAM102A, PTGES2, DPM2) 0.480706987753217 3 0.0116761865920913 0.749023738301331 905 0.146676901990294 2 1 1 -10.6176885612773 LTS-034 chr9 130915383 131073999 158617 * c(MIR3154, DNM1, CIZ1, TRUB2, GOLGA2, SWI5, LCN2, MIR199B, C9orf16) 0.411 1 NA 1.04803252164456 450 0.213349111157917 3 3 0 -5.76463135054087 LTS-034 chr9 131074000 131076080 2081 * TRUB2 NA 0 NA 0.694 1 NA NA NA NA NA LTS-034 chr9 131076081 141070283 9994203 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR219B, MIR3689D2, MIR3689E, MIR4479, LOC101448202, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, NA NA NA NA NA NA NA NA NA LTS-034 ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ABCA2, ENDOG, FCN1, FCN2, DOLK, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, ABL1, FUT7, PHYHD1, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, NDOR1, GLE1, TOR1B, ABO, LCN12, C9orf142, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, PKN3, DPP7, OBP2B, OBP2A, QRFP, GLT6D1, C9orf50, PNPLA7, CYSRT1, ENTPD8, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, ODF2, PAEP, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, C9orf78, FBXW5, TBC1D13, TOR4A, EXD3, PTPA, RABL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, SET, FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, NUP214, LHX3, URM1, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, KYAT1, FUBP3, WDR34, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.43815791322205 368 0.0712267643147202 0.763374222736542 17040 0.498129236046282 2 1 1 -6.73308549564261 LTS-034 NA NA NA NA LTS-034 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.459307570040995 5 0.152283616978321 1 NA NA -5.76443103609587 LTS-034 chr10 94832 94870 39 * TUBB8 0.491 1 NA 0.711 1 NA NA NA NA NA LTS-034 chr10 94871 1405779 1310909 * c(MIR5699, ADARB2, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, IDI1, TUBB8, LINC00200, PRR26, IDI2-AS1, IDI2) 0.398551078678182 27 0.0482746180351408 1.60223111522499 1139 0.336821796644009 5 3 2 -6.75282338273361 LTS-034 chr10 1405780 11505175 10099396 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, NET1, ADARB2, PITRM1, CELF2, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, KIN, LINC00710, GATA3, GDI2, LINC00700, LINC00705, AKR1C8P, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00701, LOC399715, GATA3-AS1, PRKCQ-AS1, CELF2-AS2, ATP5C1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, PRKCQ, SFMBT2, ADARB2-AS1, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, TAF3, FBXO18, RBM17, NA NA NA NA NA NA NA NA NA LTS-034 AKR1C3, USP6NL) 0.341892521202978 130 0.0438739996734564 1.81127994349399 3573 0.526954474496458 6 4 2 -6.84879046067148 LTS-034 NA NA NA NA LTS-034 chr10 11505176 11532807 27632 * USP6NL 0.491 1 NA 1.77629679540949 39 0.400713954603911 5 5 0 -5.76499455565686 LTS-034 chr10 11532808 11914271 381464 * c(PROSER2-AS1, PROSER2, ECHDC3, USP6NL) 0.303 1 NA 1.83582632837643 172 0.360456376322581 6 6 0 -5.76996287239368 LTS-034 chr10 11914272 11962009 47738 * c(PROSER2-AS1, PROSER2) NA 0 NA 1.308 1 NA NA NA NA NA LTS-034 chr10 11962010 16555751 4593742 * c(PPIAP30, MIR1265, MIR4480, OPTN, RPP38, NUDT5, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, UPF2, NA, C1QL3, ACBD7, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, DCLRE1C, MEIG1, SUV39H2, FAM188A, FAM107B, CCDC3, ITGA8, PRPF18, CDC123, PTER, NMT2) 0.40995236797257 57 0.0480396009365749 1.61834067086994 2937 0.393302313607477 5 3 2 -6.74270453197624 LTS-034 chr10 16555752 17757955 1202204 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, VIM, STAM, CUBN, HACD1) 0.408040658493267 22 0.0349991960328194 1.4924365816107 955 0.386820181839377 5 3 2 -6.78175828759618 LTS-034 chr10 17757956 17813275 55320 * c(TMEM236, STAM) NA 0 NA 0.946 1 NA NA NA NA NA LTS-034 chr10 17813276 17908619 95344 * c(MRC1, NA, TMEM236) NA 0 NA 0.953345836694372 49 0.593157774464908 3 NA NA -5.76620144210451 LTS-034 chr10 17908620 17949528 40909 * c(MRC1, NA, TMEM236) NA 0 NA 1.517 1 NA NA NA NA NA LTS-034 chr10 17949529 38740382 20790854 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, LOC100129055, SLC39A12-AS1, LOC100130992, MTRNR2L7, MIR1915, ZNF33BP1, LOC100499489, LINC00838, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ENKUR, ARMC3, ZNF25, GJD4, CCNY, OTUD1, WAC-AS1, ZNF438, ZEB1-AS1, NA, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, SEPT7P9, EBLN1, NA NA NA NA NA NA NA NA NA LTS-034 ITGB1, PTCHD3, KIF5B, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, LINC00999, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, MTPAP, KIAA1217, PARD3, PRTFDC1, ZNF248, NA, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, TMEM236, SVIL, MIR603, MIR604, ZEB1, LINC00202-2, ZNF33A, ZNF37A, CACNB2, CCDC7, THNSL1, MLLT10, EPC1, FZD8, CUL2, LYZL1, PLXDC2, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SPAG6) 0.405266669225754 199 0.0713798902104829 1.60310956258495 8480 0.737199493614925 5 3 2 -6.75021639265309 LTS-034 NA NA NA NA LTS-034 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 0.991 1 NA NA NA NA NA LTS-034 chr10 42379946 46281287 3901342 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.36882724855203 42 0.0428549670372958 1.02564524384119 1781 0.229048384039632 3 2 1 -6.80133288229805 LTS-034 chr10 46281288 46550852 269565 * c(AGAP4, FAM21C, PTPN20, NA) NA 0 NA 7.491 1 NA NA NA NA NA LTS-034 chr10 46550853 47701275 1150423 * c(PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.374621106452032 35 0.0815371957189741 1.34907968791429 311 0.667585495232381 3 2 1 -6.84083408076267 LTS-034 chr10 47701276 47701299 24 * c(PTPN20, GLUD1P7, NA, NA) NA 0 NA 1.15 1 NA NA NA NA NA LTS-034 chr10 47701300 48025540 324241 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.213084885997938 2 0.0169705627484772 0.50539577611809 39 0.410905449950375 1 1 0 -7.89871514384365 LTS-034 chr10 48025541 48025639 99 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 1.405 1 NA NA NA NA NA LTS-034 chr10 48025640 51592690 3567051 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, MSMB, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.357158398883124 50 0.0530380110132808 1.08056754936037 2417 0.262080634633949 3 2 1 -6.74801835669678 LTS-034 chr10 51592691 51603248 10558 * c(TIMM23, NA, PARG) NA 0 NA 0.125 1 NA NA NA NA NA LTS-034 chr10 51603249 51633060 29812 * c(TIMM23, NA, PARG) 0.291677340922592 5 0.0155659885648166 0.59625840300782 44 0.187326968786324 4 3 1 -7.25950338803245 LTS-034 chr10 51633061 51827843 194783 * c(NA, FAM21A, AGAP6, NA, PARG) NA 0 NA 1.209 1 NA NA NA NA NA LTS-034 chr10 51827844 63212808 11384965 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, FAM21A, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.357556129322881 41 0.0455526497850457 1.10292204844739 2951 0.301127860082371 3 2 1 -6.85793979796541 LTS-034 chr10 63212809 63212923 115 * TMEM26 NA 0 NA 0.845 1 NA NA NA NA NA LTS-034 chr10 63212924 117971221 54758298 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, BMS1P21, KCNIP2-AS1, MIR1287, MIR1296, MIR1256, MIR1307, MIR2110, FAS-AS1, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4679-1, MIR4483, MIR4679-2, MIR4676, MIR4678, MIR4482, MIR4685, MIR5692C2, MIR548AV, LINC00502, NA NA NA NA NA NA NA NA NA LTS-034 PPIF, ACTR1A, SMNDC1, NPM3, MICU1, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, POLR3A, LDB3, HOGA1, ECD, CHUK, SORCS1, CHCHD1, MSS51, CFAP70, PIK3AP1, MORN4, ZFYVE27, COMTD1, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ANAPC16, ADD3, ABCC2, COL13A1, COL17A1, ADK, COX15, CPN1, ADAMTS14, ACSM6, SAMD8, LIPJ, CFL1P1, TRUB1, VTI1A, DYDC1, EIF5AL1, HECTD2, FGFBP3, ADRA2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, USP54, CYP26A1, NKX2-3, SLC35G1, CFAP58, FUT11, OIT3, LINC00858, DNA2, DNTT, DUSP5, EGR2, EIF4EBP2, TMEM254-AS1, PLAC9, C10orf107, TMEM26, ZCCHC24, UNC5B, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, FGF8, CPEB3, ZNF365, NT5C2, PDCD11, SORCS3, ZSWIM8, WAPL, PPRC1, RRP12, TBC1D12, DNAJC9, DNMBP, FRAT2, SIRT1, KAT6B, TSPAN15, IFIT5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF503-AS1, CALHM1, DPCD, SEC31B, NUDT13, ATRNL1, HERC4, LRIT1, TCTN3, KIF1BP, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, GFRA1, AP3M1, ANKRD1, GHITM, PALD1, PDCD4, R3HCC1L, POLL, GLUD1, GLUD1P3, GOT1, BLOC1S2, RBM20, PDCD4-AS1, FLJ37201, ZMIZ1-AS1, GRID1, CTNNA3, BLNK, NRBF2, HABP2, ANXA2P3, HELLS, KCNIP2, HHEX, HK1, ANXA7, ANXA11, FAM149B1, HNRNPH3, TLX1, HPS1, HTR7, FFAR4, DUPD1, LIPM, CYP26C1, VWA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LRIT2, IDE, IFIT2, IFIT1, IFIT3, LRRTM3, FAS, NHLRC2, KCNMA1, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, GUCY2GP, ABLIM1, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf105, C10orf62, C10orf55, LINC00595, DNAJC9-AS1, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, MXI1, NDUFB8, NFKB2, NODAL, NRAP, P4HA1, NEUROG3, PAX2, PCBD1, ASCC1, EXOSC1, MRPS16, CALHM2, CUTC, PLCE1, DUSP13, PDE6C, SUFU, ACSL5, PGAM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PITX3, PLAU, PANK1, CCSER2, EXOC6, FAM35A, DDIT4, CCNJ, PPA1, MARCH5, DNAJB12, CNNM2, WBP1L, PPP1R3C, CCDC186, CRTAC1, CEP55, LRRC20, CWF19L1, SLC29A3, PPP3CB, RNLS, PI4K2A, H2AFY2, PRF1, SRGN, HIF1AN, RUFY2, SLF2, CCAR1, TDRD1, DNAJC12, PSAP, PSD, C10orf2, SAR1A, TM9SF3, ENTPD7, ZMIZ1, PTEN, AS3MT, MIR146B, STAMBPL1, GPAM, FAM160B1, SEMA4G, ALDH18A1, MYOZ1, ACTA2, RBP4, RGR, AVPI1, HPSE2, RPS24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SCD, CDH23, PBLD, NPFFR1, C10orf54, MMS19, LOC642361, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, SFTPD, ZDHHC6, RPL13AP6, FBXW4, BEND3P3, SFTPA1, BMPR1A, SLIT1, SNCG, SNORA12, SUPV3L1, TACR2, TAF5, SNORD98, MIR608, MIR609, TCF7L2, TECTB, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, UNC5B-AS1, RPEL1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, WNT8B, XPNPEP1, CUEDC2, DDX50, FBXL15, C10orf76, HPS6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MMRN2, MFSD13A, SYNPO2L, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, TMEM254, HKDC1, CFAP43, TET1, SLC25A16, TNKS2, SHOC2, TRIM8, TSPAN14, KAZALD1, CAMK2G, SFXN3, SLC25A28, ELOVL3, MARVELD1, C10orf11, CASP7, PCGF6, ARID5B, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, AFAP1L2, PLA2G12B, MYPN, PYROXD2, USMG5, ZNF503, AIFM2, ADO, ATAD1, ARHGAP19, JMJD1C-AS1, NDST2, MBL1P, LIPF, ITPRIP, GBF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LDB1, SGPL1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, MCU, PAPSS2, INA, PDLIM1, SMC3, NEURL1, DDX21, LGI1, NOLC1, CDHR1, DLG5, BBIP1, OPALIN, OPN4, GSTO1, CHST3, ENTPD1, VPS26A, MINPP1, KIF20B, SEC24C, SH3PXD2A, SLK, SPOCK2, ZNF518A, DCLRE1A) 0.353641007813626 770 0.0665183656045006 1.05220120983923 37042 0.271485394873576 3 2 1 -6.75688914542913 LTS-034 NA NA NA NA LTS-034 chr10 117971222 117986243 15022 * GFRA1 NA 0 NA 1.27 1 NA NA NA NA NA LTS-034 chr10 117986244 119308575 1322332 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.371508453178969 17 0.0563106535735677 1.14574020273298 1237 0.257341680824501 3 2 1 -6.8300070811883 LTS-034 chr10 119308576 134693137 15384562 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, MIR4681, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, PRDX3, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, SFXN4, CPXM2, CACUL1, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, PLPP4, FAM24B, EMX2, FGFR2, RAB11FIP2, INPP5F, FAM175B, EBF3, CASC2, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, PRLHR, GPR26, NA NA NA NA NA NA NA NA NA LTS-034 GRK5, HMX2, NANOS1, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, RGS10, FAM204A, LHPP, SNORA19, FAM196A, IKZF5, BNIP3, TIAL1, UROS, MCMBP, C10orf88, LRRC27, ADAM12, NKX6-2, EIF3A, BUB3, FANK1, BAG3, FAM53B NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ) 0.345278478445785 230 0.066349376033381 1.05848524595984 8071 0.389929345729767 3 2 1 -6.76390356275224 LTS-034 NA NA NA NA LTS-034 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.598 1 NA NA NA NA NA LTS-034 chr10 134694406 134756359 61954 * CFAP46 NA 0 NA 0.542261416801599 163 0.0935631652634464 1 NA NA -5.84956664067002 LTS-034 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.617 1 NA NA NA NA NA LTS-034 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.334593429531847 82 0.073465620396939 1.07250165068231 1443 0.30827471753402 3 2 1 -6.80658498836732 LTS-034 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.482 1 NA NA NA NA NA LTS-034 chr11 193025 193112 88 * SCGB1C1 0.367 1 NA 0.982 1 NA NA NA NA NA LTS-034 chr11 193113 1013987 820875 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, MUC6, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.189584281723725 26 0.13151000546902 0.523470946324224 2869 0.141908608223073 1 1 0 -7.00268211501702 LTS-034 chr11 1013988 1016834 2847 * MUC6 0.209 1 NA 0.607749844000171 23 0.262790242327318 2 2 0 -5.76571213489462 LTS-034 chr11 1016835 1017299 465 * MUC6 0.260129162166297 12 0.0964397676681087 1.11652946197287 22 0.921628212876843 12 9 3 -6.73369748615266 LTS-034 chr11 1017300 1017302 3 * MUC6 0.407 1 NA 1.379 1 NA NA NA NA NA LTS-034 chr11 1017303 1018232 930 * MUC6 0.306592808372516 26 0.102453862036303 1.12694197863164 42 0.791116563812026 7 5 2 -6.73439255057671 LTS-034 chr11 1018233 1018245 13 * MUC6 NA 0 NA 0.65 1 NA NA NA NA NA LTS-034 chr11 1018246 1258295 240050 * c(MUC2, MUC6, MUC5B) 0.304130268707227 51 0.134320515128232 0.627563376083246 731 0.353265928861778 3 2 1 -7.13667391859889 LTS-034 chr11 1258296 1260193 1898 * MUC5B 0.163 1 NA 0.592887005871774 5 0.246659279168654 1 1 0 -5.7654158626005 LTS-034 chr11 1260194 2418631 1158438 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, KRTAP5-AS1, IGF2, INS, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, IGF2-AS, TOLLIP, MRPL23, MIR483, TH, TNNI2, TNNT3, INS-IGF2, MUC5B, MOB2, SYT8, BRSK2, CD81) 0.183100896201148 15 0.0729417249459816 0.559047254359871 1670 0.1410709923976 1 1 0 -7.63258257827382 LTS-034 chr11 2418632 2423753 5122 * c(TSSC4, CD81) NA 0 NA 0.201 1 NA NA NA NA NA LTS-034 chr11 2423754 2981201 557448 * c(TSSC4, CDKN1C, KCNQ1OT1, TRPM5, KCNQ1, NAP1L4, SLC22A18, SLC22A18AS, KCNQ1DN, PHLDA2) 0.352327094646373 9 0.153496290219377 0.164869831937728 476 0.143851406006937 0 0 0 -6.98169358250534 LTS-034 chr11 2981202 2985001 3800 * c(NAP1L4, SNORA54) NA 0 NA 0.589 1 NA NA NA NA NA LTS-034 chr11 2985002 4968117 1983116 * c(LOC100506082, MIR4687, OR7E12P, OSBPL5, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, MRGPRG-AS1, MRGPRG, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NAP1L4, NUP98, TRIM68, CHRNA10, RRM1, TSSC2, TRIM21, SNORA54, STIM1, TRPC2, ZNF195, OR51G1, OR51G2, OR51E2, CARS) 0.155919070397336 27 0.0829292253084304 0.548298737334774 1984 0.145553279111156 1 1 0 -7.91484532036768 LTS-034 chr11 4968118 4968141 24 * OR51A4 NA 0 NA 0.697 1 NA NA NA NA NA LTS-034 chr11 4968142 5009631 41490 * c(OR51A4, OR51A2, MMP26) 0 1 NA 0.236668831015697 38 0.648712610644424 0 0 0 -5.76962633097008 LTS-034 chr11 5009632 5010830 1199 * MMP26 NA 0 NA 0.553 1 NA NA NA NA NA LTS-034 chr11 5010831 5777005 766175 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.203114632919352 26 0.0594185285787316 0.546760206967028 1169 0.15255678281782 1 1 0 -7.19577290476369 LTS-034 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 0.992 1 NA NA NA NA NA LTS-034 chr11 5798827 5809605 10779 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.126 1 NA 0.948669635191104 39 0.478556146293406 3 3 0 -5.76475113838633 LTS-034 chr11 5809606 5809669 64 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.629 1 NA NA NA NA NA LTS-034 chr11 5809670 12229655 6419986 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MIR5691, MRVI1, TRIM22, IPO7, TRIM3, LYVE1, PRKCDBP, TPP1, OR5P2, OR5P3, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, ADM, SYT9, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, NA NA NA NA NA NA NA NA NA LTS-034 OVCH2, ILK, GALNT18, GVINP1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, TMEM41B, LOC440028, TMEM9B-AS1, RNF141, CYB5R2, USP47, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, ZBED5, RPL27A, SNORA3A, MRPL17, LOC644656, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, SNORD97, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, RIC3, SBF2, FAM160A2, PPFIBP2, TRIM5, OR6A2, DCHS1, EIF3F, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CCKBR, MICAL2, CTR9, TRIM66) 0.165056964933401 85 0.0476480385139797 0.526058211262731 7418 0.172695080049015 1 1 0 -8.15872816773106 LTS-034 NA NA NA NA LTS-034 chr11 12229656 12265732 36077 * MICAL2 NA 0 NA 0.566067584695422 81 0.128624593725738 1 NA NA -5.8091393500289 LTS-034 chr11 12265733 12270604 4872 * MICAL2 NA 0 NA 1.011 1 NA NA NA NA NA LTS-034 chr11 12270605 12315186 44582 * c(MICALCL, MICAL2) 0.421 1 NA 1.14076093456883 45 0.192071911512119 3 3 0 -5.76843111828155 LTS-034 chr11 12315187 19864521 7549335 * c(LOC100126784, LINC00958, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, NAV2-AS5, SPON1, OR7E14P, C11orf58, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, CYP2R1, COPB1, PLEKHA7, SPTY2D1, TMEM86A, LDHAL6A, RRAS2, MRGPRX1, SERGEF, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, INSC, LDHA, LDHC, NAV2-AS4, ARNTL, MYOD1, NUCB2, LOC494141, PDE3B, PIK3C2A, ZDHHC13, UEVLD, SOX6, PARVA, PSMA1, PTH, RPS13, SAA1, NA NA NA NA NA NA NA NA NA LTS-034 SAA2, SAA3P, SAA4, RASSF10, ABCC8, TEAD1, TPH1, TSG101, CALCA, CALCB, E2F8, CSRP3, FAR1, BTBD10, PTPN5, MICALCL, NAV2) 0.401844492407782 96 0.0576219216554182 1.12290738787271 5419 0.293653337301845 3 2 1 -7.20471662529214 LTS-034 NA NA NA NA LTS-034 chr11 19864522 19890442 25921 * NAV2 NA 0 NA 1.394 1 NA NA NA NA NA LTS-034 chr11 19890443 30947083 11056641 * c(CCDC179, DCDC5, LINC00678, PRMT3, HTATIP2, DBX1, ARL14EP, MUC15, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, GAS2, LUZP2, KCNA4, FIBIN, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.398078279181435 104 0.0647135232071705 1.1922714283191 3256 0.281168475782063 3 2 1 -7.92636703052094 LTS-034 chr11 30947084 30953084 6001 * DCDC5 NA 0 NA 1.05 1 NA NA NA NA NA LTS-034 chr11 30953085 40137543 9184459 * c(C11orf91, DCDC5, MIR3973, MIR1343, HIPK3, EIF3M, C11orf74, DNAJC24, LDLRAD3, CSTF3, IMMP1L, ELF5, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, LINC00294, COMMD9, CSTF3-AS1, DCDC1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, APIP, WT1-AS, TRIM44, NAT10, TCP11L1, LRRC4C, RAG1, RAG2, RCN1, SLC1A2, TRAF6, WT1, PRRG4, QSER1, PRR5L, PDHX, CAT, DEPDC7, CD44, CD59) 0.39175110320788 108 0.0647834819433957 1.11336175431046 4666 0.276622268391139 3 2 1 -7.04673751448667 LTS-034 chr11 40137544 42275291 2137748 * c(LOC100507205, LRRC4C) NA 0 NA 1.17661268403755 31 0.127247984119064 3 NA NA -6.53658666396153 LTS-034 chr11 43333398 44102818 769421 * c(MIR670, ALKBH3-AS1, EXT2, ALKBH3, C11orf96, ACCSL, MIR129-2, HSD17B12, TTC17, SEC14L1P1, ACCS, API5) 0.144 1 NA 0.537270216342802 651 0.118843716591065 1 1 0 -6.29589811993454 LTS-034 chr11 44102819 46939875 2837057 * c(MIR3160-2, MIR3160-1, LOC100507384, LRP4-AS1, MIR4688, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, EXT2, F2, LOC221122, HARBI1, CD82, DKFZp779M0652, ARHGAP1, LRP4, MDK, PHF21A, SLC35C1, AMBRA1, PRDM11, SYT13, ALX4, SNORD67, ZNF408, ACCS, DGKZ, CHST1, TSPAN18, CREB3L1, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.163988579204555 6 0.0810078185526969 0.545830080640999 2693 0.137847573467247 1 1 0 -8.30984912541867 LTS-034 chr11 46939876 46958276 18401 * c(LRP4, C11orf49) NA 0 NA 0.352 1 NA NA NA NA NA LTS-034 chr11 46958277 47640350 682074 * c(NR1H3, CELF1, C1QTNF4, PTPMT1, DDB2, MTCH2, PACSIN3, FAM180B, MYBPC3, NDUFS3, ACP2, KBTBD4, PSMC3, RAPSN, SPI1, C11orf49, ARFGAP2, MADD, SLC39A13) 0.0492262811525998 4 0.0817491080481412 0.51324514582281 1418 0.134191004776865 1 1 0 -8.25245016203776 LTS-034 chr11 47640351 47640355 5 * MTCH2 0.341 1 NA 1.405 1 NA NA NA NA NA LTS-034 chr11 47640356 48346493 706138 * c(OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4C3, OR4S1, OR4X1, PTPRJ, AGBL2) 0.402451302928949 7 0.0925755804477514 0.517416402889161 807 0.158093936631566 2 1 1 -8.68513212555936 LTS-034 chr11 48346494 48346513 20 * OR4C3 0.381 1 NA 2.421 1 NA NA NA NA NA LTS-034 chr11 48346514 48387986 41473 * c(OR4C3, OR4C45) 0.426843125974392 103 0.0687987087545234 1.25570198121015 179 0.886044105378318 7 4 3 -6.74514177390468 LTS-034 chr11 48387987 49230276 842290 * c(FOLH1, TRIM49B, OR4A47, TRIM64C) 0.428422688746597 11 0.137700399418448 0.585789164965048 240 0.271317550702837 2 1 1 -7.18723004447416 LTS-034 chr11 49230277 49311825 81549 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-034 chr11 49311826 51516144 2204319 * c(OR4C46, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) 0.171 1 NA 0.842088516247077 223 0.334271904135294 2 2 0 -5.87294321432113 LTS-034 chr11 51516145 51527703 11559 * OR4C46 NA 0 NA 0.716632867724588 9 0.0939544807044584 2 NA NA -5.76769613051191 LTS-034 chr11 55035776 56043702 1007927 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, TRIM51HP, TRIM48, OR8J3, OR4P4, OR4C15, OR4A16, OR4A15, TRIM51) 0.085 1 NA 0.874813104645881 643 0.217446906282846 2 2 0 -5.9881100297974 LTS-034 chr11 56043703 56468835 425133 * c(OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AP2, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9) 0.309126874492237 39 0.127331381449171 0.996189925113095 413 0.578281883360411 4 3 1 -6.82990457043806 LTS-034 chr11 56468836 56957808 488973 * c(OR5AK4P, LRRC55, OR9G4, OR5AK2, OR8U8) 0.104 1 NA 0.849869461299195 175 0.159931276907718 2 2 0 -5.89019341973821 LTS-034 chr11 56957809 57080774 122966 * c(APLNR, LRRC55, TNKS1BP1) 0.159 1 NA 0.877574137820037 159 0.207178611521289 2 2 0 -5.79692261478475 LTS-034 chr11 57080775 64981837 7901063 * c(NAALADL1, TMEM262, MIR1908, MIR1237, MIR3162, TMX2-CTNND1, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4488, LOC100996455, RASGRP2, GLYAT, RTN3, PRG3, NXF1, TAF6L, SCGB1D2, SCGB1D1, EHD1, STIP1, CLP1, PLA2G16, PTGDR2, CHRM1, CDCA5, RPLP0P2, SLC22A9, BATF2, SLC22A12, HRASLS5, CNTF, COX8A, C11orf84, CTNND1, DDB1, GPHA2, EEF1G, MARK2, ESRRA, SMTNL1, YPEL4, MED19, FAU, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, NA NA NA NA NA NA NA NA NA LTS-034 OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, LRRN4CL, HNRNPUL2, FEN1, FKBP2, ZP1, ATG2A, GANAB, DTX4, SNHG1, FLRT1, MS4A6E, FTH1, EML3, PRDX5, TEX40, ZDHHC5, ATL3, TKFC, DKFZP434K028, B3GAT3, PPP1R14B, TIMM10, BSCL2, GIF, PRPF19, GNG3, SELENOH, MAJIN, LOC283194, LINC00301, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SLC43A3, SAC3D1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DNAJC4, MS4A10, RTN4RL2, INCENP, FAM111B, TMEM179B, ZFP91-CNTF, SLC22A25, SLC22A10, SPDYC, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, ARL2, SCGB1D4, MIR130A, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, SLC22A20, OR5B3, OSBP, P2RX3, MS4A13, KCNK4, UBXN1, TMX2, TMEM216, SLC15A3, MS4A4A, TRMT112, TMEM138, PGA5, PLCB3, POLR2G, WDR74, MS4A12, MRPL16, SDHAF2, TMEM132A, HRASLS2, VPS37C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PPP2R5B, PRG2, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, PYGM, MS4A7, RAB3IL1, MAP4K2, RARRES3, ROM1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, TUT1, SLC3A2, C11orf95, SSRP1, STX3, STX5, SNORA57, MIR611, TCN1, SERPING1, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, VEGFB, BEST1, MYRF, TMEM258, DAGLA, METTL12, SF1, ZFPL1, AHNAK, TMEM223, TMEM109, CCDC86, LBHD1, UQCC3, NAA40, ZBTB3, CPSF7, ASRGL1, INTS5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZFP91, OR10W1, OR10V2P, CAPN1, MS4A8, FERMT3, TRPT1, NUDT22, SYVN1, MS4A14, SLC43A1, LGALS12, TNKS1BP1, RPS6KA4, SYT7, CD5, MTA2, GLYATL1, CD6, UBE2L6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, MS4A1, MS4A3, SLC22A6, SLC22A8, NRXN2, LPXN, FADS2) 0.11148876434411 34 0.0868977927306653 0.82356737919222 14588 0.196667491423171 2 2 0 -7.34550232943707 LTS-034 NA NA NA NA LTS-034 chr11 64981838 65429479 447642 * c(MIR4489, MIR4690, KCNK7, CDC42EP2, SSSCA1, TIGD3, FAM89B, POLA2, SSSCA1-AS1, EHBP1L1, SLC25A45, NEAT1, MALAT1, PCNX3, LTBP3, MAP3K11, SLC22A20, SCYL1, RELA, DPF2, SIPA1, FRMD8) NA 0 NA 0.832978667293296 1687 0.185455451394873 2 NA NA -5.82129107866709 LTS-034 chr11 65429480 65429483 4 * RELA NA 0 NA 0.728 1 NA NA NA NA NA LTS-034 chr11 65429484 66134963 705480 * c(KAT5, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, SNX32, TSGA10IP, CNIH2, TMEM151A, BRMS1, EFEMP2, SLC29A2, OVOL1, PACS1, CD248, RELA, KLC2, MUS81, FOSL1, RAB1B, C11orf68, RNASEH2C, EIF1AD, BANF1, GAL3ST3, SART1, AP5B1, FIBP, RIN1) 0.336 1 NA 0.761217722943199 2087 0.174962583598391 2 2 0 -5.76467016645338 LTS-034 chr11 66134964 66702045 567082 * c(RBM14-RBM4, DPP3, RBM14, PELI3, ZDHHC24, NPAS4, SLC29A2, PC, CCDC87, BBS1, RBM4, MRPL11, SPTBN2, LRFN4, C11orf80, RBM4B, CTSF, ACTN3, CCS, RCE1) NA 0 NA 0.774768498478367 1615 0.171991854586789 2 NA NA -5.76644658999347 LTS-034 chr11 66702046 66742689 40644 * PC NA 0 NA 1.456 1 NA NA NA NA NA LTS-034 chr11 66742690 68854121 2111432 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, GRK2, MRPL21, TPCN2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, C11orf86, NUDT8, GSTP1, RHOD, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, GPR152, DOC2GP, LRP5, NDUFV1, NDUFS8, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, PPP6R3, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, SYT12, ACY3, PITPNM1, TESMIN) 0.457606712519421 36 0.0302083111658375 1.36835083089664 3181 0.285405125156485 4 2 2 -6.97189813309326 LTS-034 chr11 68854122 68854561 440 * TPCN2 NA 0 NA 1.638 1 NA NA NA NA NA LTS-034 chr11 68854562 76118995 7264434 * c(KCNE3, LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, TPBGL, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, NEU3, SLCO2B1, SNORD15B, ARAP1, XRRA1, DHCR7, CTTN, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, C2CD3, MYEOV, P4HA3, PGM2L1, KLHL35, LOC283214, ALG1L9P, OR2AT4, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, NA NA NA NA NA NA NA NA NA LTS-034 FLJ42102, PHOX2A, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, NUMA1, P2RY2, P2RY6, COA4, PDE2A, PPME1, MRPL48, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, THAP12, KRTAP5-8, PLEKHB1, RAB6A, CCND1, SNORD15A, RPS3, UCP2, UCP3, UVRAG, WNT11, MOGAT2, PAAF1, GDPD5, CLPB, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, SPCS2, ARHGEF17, FCHSD2, FGF19) 0.454143098626387 143 0.0356208419464103 1.42894996530081 7156 0.347415010225736 4 2 2 -6.95550415193531 LTS-034 NA NA NA NA LTS-034 chr11 76118996 76508684 389689 * c(TSKU, LRRC32, GUCY2EP, EMSY) 0.401643771005513 12 0.0308057206415046 1.73253033194957 474 0.380196961195309 5 3 2 -6.74931127425403 LTS-034 chr11 76508685 78365600 1856916 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, B3GNT6, GDPD4, TSKU, TENM4, AQP11, KCTD21, AAMDC, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, USP35, KCTD14, THRSP, CAPN5, ALG8, NARS2, INTS4, GAB2) 0.459150353900546 55 0.0327071692837965 1.4019067777646 2057 0.314727272561841 4 2 2 -6.98273538686695 LTS-034 chr11 78365601 82443266 4077666 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4) 0.470331872793749 4 0.0146742404687034 1.56689915566856 332 0.308813757055594 4 2 2 -9.25264906034089 LTS-034 chr11 82443267 89943681 7500415 * c(NAALAD2, SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, TRIM64, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, CHORDC1, RAB30, GRM5, ANKRD42, TRIM77, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, TRIM49, CREBZF, CCDC90B, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.43192921390507 70 0.115715472605931 1.34549919221333 3652 0.37579682930769 4 2 2 -6.73585573008127 LTS-034 chr11 89943682 90602370 658689 * c(MIR4490, CHORDC1) NA 0 NA 1.37651662830582 53 0.404918154571151 4 NA NA -5.76511289846012 LTS-034 chr11 91536381 92573911 1037531 * FAT3 0.083 1 NA 0.878604431043609 259 0.152738100940708 2 2 0 -6.24067598963264 LTS-034 chr11 92573912 114284744 21710833 * c(LOC100132078, WTAPP1, NCAM1-AS1, MIR1304, MIR4301, MIR1260B, MIR3920, CASP12, HSPB2-C11orf52, MIR4491, MIR4693, JRKL-AS1, LOC101054525, RBM7, YAP1, GPR83, CARD16, TMEM123, SLC36A4, FAT3, COLCA2, PIH1D2, CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, DEUP1, C11orf65, DDX10, DLAT, DRD2, FDX1, ENDOD1, EXPH5, SIK2, PANX1, FUT4, ANGPTL5, ANKK1, TIMM8B, GRIA4, C11orf54, GUCY1A2, NA NA NA NA NA NA NA NA NA LTS-034 BIRC2, BIRC3, HSPB2, HTR3A, C11orf53, HEPHL1, PLET1, IL18, ACAT1, VSTM5, IZUMO1R, KDM4E, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, MTNR1B, NCAM1, ATM, NNMT, NPAT, CWC15, PGR, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, ANKRD49, TTC12, PPP2R1B, C11orf57, ELMOD1, KDM4D, TEX12, SMCO4, CEP126, ARHGAP20, USP28, PTS, CARD18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RDX, AASDHPPT, SCARNA9, SDHD, MMP27, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, SNORA8, SLN, SNORA18, SNORA40, SNORD5, TRPC6, ZBTB16, TAF1D, DYNC2H1, CCDC82, ALG9, PDGFD, CUL5, TMPRSS5, CASP1, CASP4, CASP5, BCO2, TMEM133, DCUN1D5, MSANTD4, MAML2, C11orf70, DIXDC1, CEP295, ZC3H12C, JRKL, MTMR2, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, MED17, CEP57) 0.143915517249499 36 0.0976112917941069 0.826850200446983 12459 0.213550493392631 2 2 0 -8.16642946298715 LTS-034 NA NA NA NA LTS-034 chr11 114284745 114421754 137010 * c(NXPE1, REXO2) 0.43 1 NA 0.78407655603331 121 0.173905518425503 2 2 0 -5.76614271308815 LTS-034 chr11 114421755 114421967 213 * NXPE1 0.446335356383969 9 0.0297101740897701 1.10611075401946 13 0.345155000483803 4 2 2 -6.77726755616494 LTS-034 chr11 114421968 114441943 19976 * c(NXPE1, NXPE4) 0.094 1 NA 0.857307644224347 13 0.191957694324183 2 2 0 -5.76867434647832 LTS-034 chr11 114441944 130103127 15661184 * c(LOC100131626, PATE3, BACE1-AS, MIR3167, USP2-AS1, MIR3656, SENCR, TMPRSS4-AS1, FXYD6-FXYD2, MIR4493, MIR4492, LOC100652768, KIRREL3-AS2, MPZL2, HYOU1, ATP5L, CHEK1, TREH, TIRAP, PANX3, APOA5, TMEM45B, NXPE2, JAML, TTC36, PATE1, DDX6, DPAGT1, MPZL3, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, HEPACAM, OAF, CEP164, FLI1, PHLDB1, ARHGEF12, SIK3, NA NA NA NA NA NA NA NA NA LTS-034 VSIG2, BACE1, TRIM29, CADM1, SLC37A4, RNF214, POU2F3, HINFP, OR8G2, OR8B8, OR8B2, LINC00900, BCL9L, FOXR1, CCDC153, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, GRIK4, ZBTB44, DDX25, H2AFX, HMBS, HSPA8, APLP2, APOA1, APOA4, CCDC84, TMEM225, OR8D4, LOC341056, APOC3, IL10RA, STT3A, ARCN1, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, VWA5A, MIRLET7A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR100, MIR125B1, BLID, MCAM, KMT2A, LINC00167, NFRKB, FXYD2, NRGN, PAFAH1B2, CDON, SIDT2, TRAPPC4, SPA17, FXYD6, SIAE, ROBO4, NXPE4, FOXRED1, SCN3B, VPS11, ACRV1, CRTAM, TMPRSS4, IFT46, PRDM10, DSCAML1, GRAMD1B, NECTIN1, RPS25, SC5D, SCN2B, SCN4B, PKNOX2, TP53AIP1, ABCG4, HEPN1, ROBO3, CXCR5, ST3GAL4, LOC649133, RPL23AP64, SORL1, SRPRA, ST14, TAGLN, TECTA, THY1, UPK2, ZNF202, RNF26, FAM118B, NLRX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MSANTD2, CLMP, PDZD3, C11orf63, CCDC15, PUS3, MFRP, TMPRSS13, KIRREL3, BUD13, TMEM25, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, ZPR1, ESAM, USP2, CD3D, PCSK7, CD3E, CD3G, UBE4A, EI24, FEZ1, ARHGAP32, C2CD2L) 0.185735554918078 41 0.117705735815645 0.830975749222206 14951 0.27872859831756 2 2 0 -7.68281188513776 LTS-034 NA NA NA NA LTS-034 chr11 130103128 134856681 4753554 * c(LOC100128239, ADAMTS8, VPS26B, GLB1L3, ADAMTS15, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, LOC283177, ZBTB44, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) NA 0 NA 0.825673477741707 1927 0.179420626629244 2 NA NA -6.24781132321904 LTS-034 chr12 90923 90953 31 * LOC100288778 0.303 1 NA 0.928 1 NA NA NA NA NA LTS-034 chr12 90954 1599987 1509034 * c(LOC100288778, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, FAM138D, CCDC77) 0.315817942878138 41 0.0613753942911184 1.16170966501449 1544 0.275803753081673 3 2 1 -7.13412049381608 LTS-034 chr12 1599988 2851259 1251272 * c(LINC00940, LINC00942, MIR3649, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, ERC1, LRTM2, CACNA1C, ADIPOR2, WNT5B, CACNA2D4) 0.279175202025135 34 0.0392175249123342 1.38624430852711 1180 0.283026602715916 4 3 1 -6.74274659246377 LTS-034 chr12 2851260 2851311 52 * character(0) NA 0 NA 1.824 1 NA NA NA NA NA LTS-034 chr12 2851312 2876636 25325 * LOC283440 0.489 1 NA 1.80580183270341 6 0.612969411961152 6 6 0 -5.76462362711683 LTS-034 chr12 2876637 3018778 142142 * c(LOC100507424, FKBP4, FOXM1, LOC283440, ITFG2, TULP3, RHNO1, NRIP2) 0.444303485271775 5 0.030285309970347 1.98748122615835 425 0.384741901711131 6 3 3 -6.75727715264438 LTS-034 chr12 3018779 6676032 3657254 * c(AKAP3, RAD51AP1, TSPAN9, FGF6, IFFO1, GAPDH, GALNT8, KCNA1, KCNA5, KCNA6, LTBR, NDUFA9, NOP2, NTF3, MRPL51, TAPBPL, PLEKHG6, PRMT8, PARP11, ANO2, C12orf4, TIGAR, SCNN1A, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, TULP3, VWF, FGF23, CRACR2A, DYRK4, CCND2, CD9, CD27, NCAPD2) 0.390360937742472 100 0.0611170850156327 1.59769810869679 3317 0.407998727080006 5 3 2 -6.78467968385257 LTS-034 chr12 6676033 6676901 869 * NOP2 NA 0 NA 1.819 1 NA NA NA NA NA LTS-034 chr12 6676902 7284574 607673 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, MIR141, MIR200C, NOP2, COPS7A, ING4, C1RL, LPAR5, PTMS, PTPN6, SCARNA12, SCARNA11, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CLSTN3) 0.307593371030511 27 0.0459986374132391 1.89920131359923 2230 0.549185365411997 7 5 2 -6.77238792016667 LTS-034 chr12 7284575 7284939 365 * CLSTN3 NA 0 NA 1.355 1 NA NA NA NA NA LTS-034 chr12 7284940 9360935 2075996 * c(KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3, CLSTN3) 0.378713810351541 38 0.054606597697449 1.53982407246476 2622 0.342890468705779 5 3 2 -6.92769650456253 LTS-034 chr12 9360936 9456835 95900 * c(LINC00987, A2MP1, PZP, LOC642846) 0.301547362304658 2 0.0268700576850888 0.515404666950407 39 0.427781038305981 4 3 1 -7.30029515005649 LTS-034 chr12 9456836 9458244 1409 * LOC642846 NA 0 NA 1.194 1 NA NA NA NA NA LTS-034 chr12 9458245 10573121 1114877 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, DDX12P, OLR1, CLEC1B, CLEC1A, KLRF1, LOC642846, CLEC7A, KLRC4, CD69, CLEC2B) 0.368427611139752 42 0.066956570596986 1.45984859037689 1327 0.415634381754566 5 3 2 -6.97275170697161 LTS-034 chr12 10573122 10588456 15335 * c(KLRC2, KLRC3) NA 0 NA 2.46716847673739 55 0.977096924912468 8 NA NA -5.76441634104365 LTS-034 chr12 10588457 10865971 277515 * c(KLRA1P, KLRC1, KLRC2, KLRC3, MAGOHB, STYK1, YBX3) 0.409412000874788 11 0.0549469165319005 1.45402458417718 298 0.548893314258939 5 3 2 -6.74390575350886 LTS-034 chr12 10865972 11174213 308242 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2, YBX3) 0.281 1 NA 1.50623667212358 355 0.343274376748623 5 5 0 -5.7770055056603 LTS-034 chr12 11174214 11215070 40857 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, PRB4) 0.268986687339155 37 0.0502871782893045 1.52047134196076 102 0.259945069276112 4 3 1 -6.78087444082521 LTS-034 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.23 1 NA NA NA NA NA LTS-034 chr12 11243803 11244927 1125 * c(PRH1-PRR4, TAS2R43, PRB4) NA 0 NA 0.195130119065583 67 0.156736704034754 0 NA NA -5.76470753666498 LTS-034 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.926 1 NA NA NA NA NA LTS-034 chr12 11285579 11338589 53011 * c(SMIM10L1, PRH1-PRR4, TAS2R30, PRB4) 0.25730468415627 9 0.062135157340895 1.4834798106535 43 0.262679235860737 4 3 1 -6.83387324454257 LTS-034 chr12 11338590 11338669 80 * c(TAS2R42, PRB4) 0.384 1 NA 1.3778785723302 3 0.113773166139179 4 4 0 -5.76441132963738 LTS-034 chr12 11338670 33021934 21683265 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-034 SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.393001264279045 267 0.0608945681722102 1.58366882576434 11658 0.488667490874692 5 3 2 -6.84443245817692 LTS-034 NA NA NA NA LTS-034 chr12 33021935 34182671 1160737 * c(SYT10, PKP2, ALG10) NA 0 NA 1.72352096048604 195 0.432226959159376 5 NA NA -5.77197565252274 LTS-034 chr12 38710341 42475888 3765548 * c(SLC2A13, LRRK2, CNTN1, ALG10B, CPNE8, ABCD2, C12orf40, GXYLT1, PDZRN4, KIF21A) 0.28 1 NA 1.03580751038438 2049 0.228493899140798 3 3 0 -5.7853191262715 LTS-034 chr12 42475889 57449533 14973645 * c(HOTAIR, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1293, LOC100335030, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, YAF2, CDK2, RNF41, GDF11, CNPY2, TUBA1B, RAPGEF3, MCRS1, PTGES3, ATF7, BAZ2A, ADCY6, GALNT6, KRT71, GPR182, LARP4, DCD, MUCL1, FAM186A, OR2AP1, OR10P1, SDR9C7, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, COL2A1, ASB8, MYL6B, KRT72, NA NA NA NA NA NA NA NA NA LTS-034 CS, PRICKLE1, BCDIN3D, KRT80, DGKA, GRASP, KRT78, METTL7B, ANO6, ARID2, EIF4B, CELA1, ERBB3, COPZ1, FAIM2, DDN, NEMP1, ESYT1, TNS2, KCNH3, CBX5, ANP32D, SMUG1, OR6C74, OR6C3, LINC00935, PRPF40B, METTL7A, LETMD1, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, GPD1, LOC283332, LOC283335, ZNF740, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, GXYLT1, TMPRSS12, KRT6C, ORMDL2, RACGAP1, SENP1, NCKAP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, AQP6, ITGA5, ITGA7, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FIGNL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 OR6C65, OR6C68, MIR196A2, ASIC1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NACA, NELL2, NFE2, SLC11A2, PA2G4, ATP5B, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, PPHLN1, IL23A, HDAC7, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, PRIM1, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, NEUROD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAB5B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, SCN8A, IKZF4, GLYCAM1, PMEL, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, SNORA2C, SUOX, TAC3, TARBP2, SNORD59B, MIR615, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, PYM1, SARNP, SOAT2, TUBA1C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZC3H10, SPRYD3, MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2) 0.370644219244042 372 0.0648983712986962 1.03720486329635 22176 0.295654064927394 3 2 1 -6.7916419985555 LTS-034 NA NA NA NA LTS-034 chr12 57449534 57572367 122834 * c(NEMP1, LRP1, NAB2, STAT6) 0.253903337261944 6 0.0336318301613219 1.60859486723753 493 0.302413280442833 5 4 1 -6.97687561439224 LTS-034 chr12 57572368 57572622 255 * LRP1 NA 0 NA 1.062 1 NA NA NA NA NA LTS-034 chr12 57572623 75685652 18113030 * c(LOC100130075, AGAP2-AS1, MIR1279, MIR1228, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, TSFM, CTDSP2, CDK4, TMEM5, DCTN2, CCT2, AVIL, FRS2, OS9, CPSF6, WIF1, IRAK3, NXPH4, XPOT, MBD6, ARHGEF25, C12orf56, AGAP2, RAB3IP, LRIG3, TPH2, CPM, BEST3, C12orf66, CYP27B1, DDIT3, DTX3, ZFC3H1, RPSAP52, R3HDM2, RAB21, MON2, TBC1D30, GRIP1, LEMD3, STAC3, MSRB3, B4GALNT1, METTL21B, NA NA NA NA NA NA NA NA NA LTS-034 KCNMB4, GLI1, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, IFNG, INHBC, KCNC2, LRRC10, KIF5A, FLJ41278, LRP1, MIRLET7I, LYZ, MIR26A2, MARS, MDM2, METTL1, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NDUFA4L2, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TSPAN31, ARHGAP9, SHMT2, TBC1D15, SLC26A10, MIR548C, TSPAN8, MRS2P2, PIP4K2C, YEATS4, HMGA2, THAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 INHBE, LLPH, DYRK2, CAPS2, LGR5, ATP23, SLC16A7, HELB, MARCH9, USP15) 0.353431426892892 126 0.067697326387384 1.03592324092028 10956 0.247370080950121 3 2 1 -6.8233710879494 LTS-034 NA NA NA NA LTS-034 chr12 75685653 75687006 1354 * CAPS2 NA 0 NA 0.754 1 NA NA NA NA NA LTS-034 chr12 75687007 77158179 1471173 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, PHLDA1, ZDHHC17, GLIPR1L1, NAP1L1, BBS10, CAPS2) 0.389683282340964 19 0.0531055993127144 0.955019548364546 996 0.245670516447972 3 2 1 -7.06245801358205 LTS-034 chr12 77158180 77158259 80 * ZDHHC17 NA 0 NA 1.523 1 NA NA NA NA NA LTS-034 chr12 77158260 89742951 12584692 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, CSRP2, TMTC2, TMTC3, C12orf50, DUSP6, ZDHHC17, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, KITLG, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, LOC728084, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.374737803997716 60 0.0555075477129673 1.08176074431401 3852 0.36772228836248 3 2 1 -6.79842378646314 LTS-034 chr12 89742952 89743026 75 * DUSP6 NA 0 NA 1.027 1 NA NA NA NA NA LTS-034 chr12 89743027 124496176 34753150 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR4304, MIR3685, MIR3652, MIR3922, MIR3908, LOC100505978, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, POC1B-GALNT4, ZNF664-FAM101A, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5700, ARPC3, PLXNC1, MPHOSPH9, CAMKK2, TRAFD1, TMED2, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, SNRNP35, KERA, PRDM4, CIT, PWP1, FICD, NA NA NA NA NA NA NA NA NA LTS-034 NUDT4, SDSL, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, SPPL3, CMKLR1, COX6A1, CRY1, AMDHD1, ZNF664, TMEM120B, WDR66, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DCN, EPYC, DTX1, DUSP6, RILPL2, DNAH10, PLBD2, FAM71C, RMST, CCER1, EIF2B1, ELK3, ALDH2, MLXIP, RPH3A, FBXO21, SETD1B, UHRF1BP1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CUX2, KIAA1033, MED13L, SIRT4, ABCB9, ISCU, ATP6V0A2, CORO1C, SLC17A8, TTC41P, LRRC43, TCP11L2, TBX5-AS1, LINC01619, FBXW8, HSPB8, HCAR1, UTP20, POC1B, MORN3, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, GATC, HNF1A-AS1, MRPL42, IFT81, GTF2H3, FAM216A, HCFC2, HAL, APAF1, ACACB, HPD, MMAB, HCAR2, LINC00936, TMEM119, LINC01089, C12orf74, IGF1, ACADS, RILPL1, C12orf42, IL31, C12orf75, CFAP73, TMEM233, KMT5A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ARL1, C12orf76, LTA4H, LUM, MIR135A2, ASCL1, LINC00615, PLEKHG7, MIR331, MSI1, MVK, MYBPC1, MYL2, NFYB, NOS1, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, P2RX4, P2RX7, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, ARL6IP4, TAOK3, POP5, ANAPC5, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, RHOF, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, SBNO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, ZCCHC8, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, DIABLO, ANKS1B, CHPT1, PSMD9, CLLU1OS, CLLU1, TMCC3, PITPNM2, DDX55, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, BCL7A, RPL6, RPLP0, CLIP1, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643339, LOC643711, LOC643770, SUDS3, ACTR6, C12orf43, VPS33A, RSRC2, SNRPF, SNORA53, TBX5, TBX3, HNF1A, MIR620, BTG1, TDG, TMPO, NR2C1, HSP90B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, B3GNT4, TCTN1, OGFOD2, VPS37B, C12orf49, TCTN2, NAA25, SLC8B1, RNF34, CCDC92, MTERF2, ACAD10, CDK2AP1, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, COQ5, HVCN1, RASAL1, SRRM4, CCDC62, KDM2B, UNC119B, USP30, ORAI1, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DENR, OASL, DYNLL1, SRSF9, GALNT4, CRADD, HRK, ADAM1A, SOCS2, HCAR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ANKRD13A, TMEM116, UBE3B, HIP1R, TMEM263, C12orf65, BICDL1, CABP1, WSCD2, SART3, KNTC1, MLEC, GIT2, NUAK1, RBM19, RNF10, NR1H4) 0.369990087524736 581 0.0714580713134848 1.02143577433382 30894 0.311961198979538 3 2 1 -7.00934866529171 LTS-034 NA NA NA NA LTS-034 chr12 124496177 124496183 7 * c(ZNF664-FAM101A, ZNF664) NA 0 NA 1.387 1 NA NA NA NA NA LTS-034 chr12 124496184 124499752 3569 * c(ZNF664-FAM101A, ZNF664) 0.346002202151139 3 0.019313207915828 1.62338818366613 73 0.204044475596153 6 4 2 -6.74138987709256 LTS-034 chr12 124499753 133584152 9084400 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-034 PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.37614375566408 94 0.0763507369074442 1.05817068142218 5067 0.297001110609644 3 2 1 -6.75856983421845 LTS-034 NA NA NA NA LTS-034 chr12 133584153 133586723 2571 * character(0) NA 0 NA 0.781 1 NA NA NA NA NA LTS-034 chr12 133586724 133811705 224982 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.346314357728186 20 0.106045409836392 0.965366941881065 678 0.28432969494315 3 2 1 -6.75778290339697 LTS-034 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.921205007545017 19 0.222726341935149 3 NA NA -5.76464520408081 LTS-034 chr13 19271620 19271712 93 * character(0) 0.453 1 NA 0.98 1 NA NA NA NA NA LTS-034 chr13 19271713 25356053 6084341 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00417, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, ANKRD20A9P, C1QTNF9, LINC00442, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, RNF17, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, NA NA NA NA NA NA NA NA NA LTS-034 TPTE2) 0.410218399552975 67 0.0703543721119026 0.859915405456147 3013 0.211731391942327 2 1 1 -7.78266268182486 LTS-034 NA NA NA NA LTS-034 chr13 25356054 25362314 6261 * RNF17 0 1 NA 1.06427509772247 7 0.994181860339732 3 3 0 -5.7644102332215 LTS-034 chr13 25362315 26182804 820490 * c(AMER2, PABPC3, ATP8A2, CENPJ, RNF17, TPTE2P1, MTMR6, NUP58) 0.30883340221867 38 0.135822506237254 0.877455964387088 1155 0.414612067518988 3 2 1 -6.91765557270694 LTS-034 chr13 26182805 26618922 436118 * c(SHISA2, ATP8A2) 0.406 1 NA 0.864995045331099 233 0.184452985347115 2 2 0 -5.87942093449645 LTS-034 chr13 26618923 38213237 11594315 * c(LINC00426, PAN3-AS1, MIR548F5, MINOS1P1, TEX26-AS1, SPG20-AS1, CCDC169-SOHLH2, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, EXOSC8, N4BP2L2-IT2, CSNK1A1L, RXFP2, TEX26, B3GLCT, EEF1DP3, USP12, MTIF3, GSX1, LNX2, PDS5B, SPG20, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, ALG5, HMGB1, PDX1, RASL11A, NA NA NA NA NA NA NA NA NA LTS-034 SHISA2, SERTM1, LINC00547, SMAD9, ATP5EP2, LINC00544, POLR1D, POMP, UBL3, SOHLH2, SUPT20H, RFC3, RFXAP, RNF6, RPL21, SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, TRPC4, CCDC169, KATNAL1, MEDAG, CCNA1, STARD13, N4BP2L1, DCLK1, KL) 0.425545276305999 132 0.0534161642812665 0.862121457917502 5990 0.441447814124582 2 1 1 -7.24223101481971 LTS-034 NA NA NA NA LTS-034 chr13 38213238 40364721 2151484 * c(MIR4305, LINC00366, LINC00571, LHFP, STOML3, FREM2, NHLRC3, UFM1, COG6, TRPC4, PROSER1) 0.38085427683022 17 0.12604705587247 0.945027974671484 996 0.225480160577981 3 2 1 -7.06055248332826 LTS-034 chr13 40364722 48916895 8552174 * c(TPT1-AS1, MIR320D1, OR7E37P, VWA8-AS1, CPB2-AS1, TPTE2P5, MIR5006, LINC00563, LINC00441, MED4-AS1, LINC00332, SMIM2-IT1, SLC25A15, MRPS31, WBP4, AKAP11, LINC00284, CPB2, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, NUFIP1, SUGT1P3, SIAH3, RGCC, MED4, DNAJC15, GTF2F2, HTR2A, KCTD4, SERP2, LCP1, LINC00548, ENOX1, NUDT15, GPALPP1, COG6, RB1, NA NA NA NA NA NA NA NA NA LTS-034 TSC22D1-AS1, LINC00598, SNORA31, MIR621, TPT1, NAA16, RUBCNL, COG3, KBTBD7, TNFSF11, SUCLA2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1) 0.43701179179419 63 0.0503535477866811 0.84678477250109 3929 0.216409003709213 2 1 1 -7.70267363836901 LTS-034 NA NA NA NA LTS-034 chr13 48916896 48939120 22225 * RB1 NA 0 NA 0.793948660887576 31 0.218672505167268 2 NA NA -5.76480776921143 LTS-034 chr13 48939121 48941539 2419 * RB1 NA 0 NA 1.532 1 NA NA NA NA NA LTS-034 chr13 48941540 49282986 341447 * c(LINC00462, LPAR6, RCBTB2, CYSLTR2, RB1) 0.309 1 NA 1.00034814658065 289 0.265934919331187 3 3 0 -5.77375879576863 LTS-034 chr13 49282987 114780832 65497846 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, MIR3613, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, MIR4703, GPC6, MIR5007, MIR5693, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, NA NA NA NA NA NA NA NA NA LTS-034 DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, RNASEH2B-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, TRIM13, SPRY2, ABCC4, DLEU1, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, ARL11, WDFY2, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, ST13P4, DACH1, GPR180, DCT, COMMD6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FGF14, GPC5, RASA3, FNDC3A, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, INTS6, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, KCNRG, LINC00282, GPR18, MLNR, GUCY1B2, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 KPNA3, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR16-1, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, PHF11, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, RCBTB1, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, CYSLTR2, SPRYD7, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, LINC00371, SERPINE3, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, RNASEH2B, DHRS12, GRTP1, BORA, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, SETDB2, SLITRK6, STK24, CUL4A, EBPL, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, DLEU2, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.366763486715293 332 0.0728618118028213 1.0431175872331 16209 0.366490471761222 3 2 1 -6.80265978623627 LTS-034 NA NA NA NA LTS-034 chr13 114780833 114781608 776 * RASA3 NA 0 NA 0.667 1 NA NA NA NA NA LTS-034 chr13 114781609 115064542 282934 * c(RASA3, UPF3A, CDC16) 0.414236530170712 10 0.0505146843336998 0.90940108600009 208 0.215372133449939 2 1 1 -6.97379095730392 LTS-034 chr13 115064543 115092817 28275 * c(CHAMP1, UPF3A) NA 0 NA 0.839859621218644 85 0.106698496651429 2 NA NA -5.77754211474492 LTS-034 chr14 19434116 20296004 861889 * c(BMS1P17, OR4N2, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.268 1 NA 1.878581124182 109 0.395632040132076 6 6 0 -5.76803817995516 LTS-034 chr14 20296005 20404847 108843 * c(OR4N2, OR4K2, OR4K5, OR4K1) 0.245710194483628 4 0.0873054981086529 1.90306726040615 91 0.374008162989668 5 4 1 -6.75738972896651 LTS-034 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.648 1 NA NA NA NA NA LTS-034 chr14 20443534 20779586 336053 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, CCNB1IP1, OR4K15, TTC5) 0.455066557084307 25 0.0965061828761937 0.796937690128486 391 0.305763685803543 2 1 1 -6.75492561381424 LTS-034 chr14 20779587 20914598 135012 * c(SNORD126, PARP2, KLHL33, CCNB1IP1, TEP1, RPPH1) 0.497 1 NA 0.769723193674725 529 0.139587884489068 2 2 0 -5.7646009535901 LTS-034 chr14 20914599 22509019 1594421 * c(EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, RNASE7, RAB2B, TMEM55B, TOX4) 0.451330679431491 63 0.0411571178064518 0.767641016612102 2622 0.174168267843658 2 1 1 -6.7936242298438 LTS-034 chr14 22509020 22509081 62 * character(0) NA 0 NA 1.075 1 NA NA NA NA NA LTS-034 chr14 22509082 22990996 481915 * character(0) 0.470830951800532 6 0.0246143589529906 0.973817498030313 582 0.222258691415712 2 1 1 -7.95913451972719 LTS-034 chr14 22990997 23485936 494940 * c(MIR4707, PRMT5, MRPL52, DAD1, REM2, LRP10, MMP14, OXA1L, HAUS4, RBM23, C14orf93, ABHD4, AJUBA, SLC7A7) 0.457031950500062 29 0.0557579436122071 0.728568645040097 1206 0.154266550162815 2 1 1 -6.82922396534093 LTS-034 chr14 23485937 23495048 9112 * character(0) 0.425 1 NA 1.392 1 NA NA NA NA NA LTS-034 chr14 23495049 24436744 941696 * c(MIR208B, BCL2L2-PABPN1, DHRS2, EFS, CEBPE, DHRS4, CMTM5, PSMB11, ACIN1, SLC7A8, NGDN, DHRS4L2, MIR208A, MYH6, MYH7, SLC22A17, C14orf119, DHRS4-AS1, PSMB5, HOMEZ, BCL2L2, CDH24, IL25, THTPA, PABPN1, JPH4, ZFHX2, AP1G2, PPP1R3E) 0.450043866633409 45 0.0748924683675322 0.785600303332858 2204 0.234375006132181 2 1 1 -6.75548768021521 LTS-034 chr14 24436745 24437916 1172 * c(DHRS4, DHRS4L2) NA 0 NA 0.272 1 NA NA NA NA NA LTS-034 chr14 24437917 24473833 35917 * c(DHRS4, DHRS4L2, DHRS4L1) 0.387 1 NA 0.282789310762183 62 0.221188728754849 0 0 0 -5.86222931674212 LTS-034 chr14 24473834 24475045 1212 * c(DHRS4, DHRS4L2, DHRS4L1) NA 0 NA 0.715 1 NA NA NA NA NA LTS-034 chr14 24475046 73989983 49514938 * c(MED6, SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR4307, MIR548Y, LINC00645, LOC100506071, LOC100506321, LINC00871, LINC00648, NA, NEDD8-MDP1, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4503, MIR548AI, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, GPHN, CDKN3, IRF9, SEC23A, VTI1B, TM9SF1, EXOC5, CGRRF1, CFL2, DHRS4, FERMT2, RIPK3, AP4S1, WDHD1, BAZ1A, MAP4K5, NA NA NA NA NA NA NA NA NA LTS-034 EGLN3, DTD2, WDR89, L3HYPDH, TRIM9, DHRS1, NA, CMA1, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, LTB4R, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, MDP1, LRFN5, CTSG, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, FITM1, TMEM30B, MDGA2, NOP9, COCH, SPTSSA, EIF2S1, ADCY4, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, FOXG1, PCNX1, DAAM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SAMD4A, FAM179B, SYNE2, SCFD1, KHNYN, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, PLEKHG3, SIPA1L1, DCAF4, NKX2-8, TINF2, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, CIDEB, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, TSSK4, FAM177A1, GPR33, GPX2, CHMP4A, STXBP6, STRN3, GZMH, ERO1A, GZMB, HIF1A, FOXA1, DHRS4L2, ADAM20P1, C14orf39, SNORD56B, HSPA2, SLC35F4, LRRC9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, LINC01551, TOMM20L, KTN1, ARHGAP5, LGALS3, HEATR4, FLJ22447, PLEKHD1, MAX, MGAT2, MIA2, MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, SIX6, OTX2, PAX9, EMC9, PCK2, ATL1, RDH11, NIN, COX16, GMPR2, DACT1, ATP6V1D, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PPP2R3C, PRPF39, FBXO34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RNF31, DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, G2E3, AP5M1, PRKCH, EAPP, ACTR10, PRKD1, LTB4R2, PSEN1, PSMA3, PSMA6, CCDC177, SDR39U1, PSMC6, PELI2, PSME1, PSME2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, NYNRIN, TXNDC16, TRMT5, FANCM, PYGL, RBM25, SNX6, RABGGTA, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, NPAS3, SMOC1, SRSF5, CBLN3, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SRP54, SSTR1, ZFP36L1, STYX, MIR624, TGM1, NKX2-1, DHRS4L1, CCDC175, ZBTB25, VCPKMT, IPO4, L2HGDH, NUBPL, DCAF11, DDHD1, DPF3, SGPP1, TMX1, SYT16, FSCB, BRMS1L, INSM2, ARHGAP5-AS1, GEMIN2, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, SLC25A21, PAPLN, CARMIL3, NEMF, CHURC1, MAPK1IP1L, CPNE6, AKAP6, AKAP5, RGS6, KIAA0391, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SUSD6, KIAA0586, DLGAP5, REC8) 0.447905225677624 473 0.06038673514276 0.750550784163253 27846 0.213561616534349 2 1 1 -6.96224814196408 LTS-034 NA NA NA NA LTS-034 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.447 1 NA NA NA NA NA LTS-034 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.459161548951382 45 0.178867980772006 1 NA NA -5.76459318046229 LTS-034 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.635 1 NA NA NA NA NA LTS-034 chr14 74035793 74942913 907121 * c(MIR4505, ACOT2, ACOT4, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, ACOT1, ACOT6, SYNDIG1L, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.448373890953196 37 0.082430150610864 0.748919027190928 1583 0.947281585416857 2 1 1 -6.74233843956852 LTS-034 chr14 74942914 74942926 13 * character(0) NA 0 NA 1.086 1 NA NA NA NA NA LTS-034 chr14 74942927 75325247 382321 * c(MIR4709, NPC2, ISCA2, PROX2, LTBP2, FCF1, YLPM1, AREL1) 0.39220792160225 10 0.0313432608386556 1.05101106041086 881 0.219113170450252 3 2 1 -7.29625218274596 LTS-034 chr14 75325248 75327862 2615 * PROX2 NA 0 NA 0.757 1 NA NA NA NA NA LTS-034 chr14 75327863 75747912 420050 * c(TMED10, DLST, FOS, MLH3, PROX2, PGF, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1) 0.469303235234031 5 0.0245316122584717 0.728267484397437 899 0.157066868251829 2 1 1 -7.59138398017189 LTS-034 chr14 75747913 77691753 1943841 * c(BATF, C14orf1, IFT43, JDP2, LRRC74A, ESRRB, VASH1, TTLL5, ANGEL1, FOS, ZDHHC22, FLVCR2, GPATCH2L, TMEM63C, IRF2BPL, TGFB3, LINC01220, CIPC) 0.44714426869232 25 0.0375709107333497 0.789781786765487 1575 0.174885210231251 2 1 1 -6.80653807469322 LTS-034 chr14 77691754 77702949 11196 * TMEM63C 0 1 NA 0.779874176589631 13 0.492316228892334 2 2 0 -5.76442108351588 LTS-034 chr14 77702950 77771190 68241 * c(MIR1260A, POMT2, TMEM63C, NGB) 0.351824949272817 12 0.206299796559779 0.82468350061847 340 0.502945433557028 3 2 1 -6.74415391818127 LTS-034 chr14 77771191 77787759 16569 * c(GSTZ1, POMT2) 0.413 1 NA 0.796850334453366 35 0.206725360780713 2 2 0 -5.7648090063459 LTS-034 chr14 77787760 88881661 11093902 * c(DIO2-AS1, LINC00911, AHSA1, NOXRED1, ISM2, CEP128, SAMD15, DIO2, SNW1, FLRT2, GALC, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, KCNK10, SPATA7, ADCK1, VIPAS39, SEL1L, SNORA79, TSHR, SLIRP, GPR65, STON2, ALKBH1, NRXN3, SPTLC2) 0.440258290031698 90 0.0400286414312485 0.779811360814229 2917 0.215786776782333 2 1 1 -6.79005449274356 LTS-034 chr14 88881662 88882987 1326 * SPATA7 NA 0 NA 0.58 1 NA NA NA NA NA LTS-034 chr14 88882988 92629919 3746932 * c(SNORA11B, FBLN5, PTPN21, FOXN3, TTC8, TC2N, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, TDP1, SPATA7, KCNK13, PSMC1, CATSPERB, ZC3H14, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11) 0.455688578036741 54 0.0515161634279924 0.72612697752103 3332 0.211636798910494 2 1 1 -6.93147540159706 LTS-034 chr14 92629920 106471388 13841469 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, CHGA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SERPINA12, PRIMA1, SYNE3, DIO3, NA NA NA NA NA NA NA NA NA LTS-034 DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, LINC00521, SERPINA11, KIF26A, TMEM251, TCL6, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, CDCA4, ATG2B, UBR7, PPP2R5C, MEG3, BTBD7, ZNF839, LGMN, C14orf132, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 BDKRB1, BDKRB2, MOAP1, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, RIN3, TMEM121, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, SERPINA6, ADAM6, DLK1, CCNK, FAM181A, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2, GOLGA5) 0.445006920138774 324 0.0643801640051782 0.763353117043524 13965 0.195848697004811 2 1 1 -6.74015702660438 LTS-034 NA NA NA NA LTS-034 chr14 106471389 106471528 140 * character(0) 0.402 1 NA 0.815255259293211 5 0.495018888528509 2 2 0 -5.76441153941853 LTS-034 chr14 106471529 107013436 541908 * c(LINC00226, LINC00221) 0.370787323607009 22 0.103134814894341 0.7558157823863 227 0.546522685073893 3 2 1 -6.86041057094929 LTS-034 chr14 107013437 107034757 21321 * character(0) NA 0 NA 1.322 1 NA NA NA NA NA LTS-034 chr14 107034758 107179263 144506 * character(0) 0.31792120092979 22 0.122083748133982 1.19686079646208 75 0.47098609531703 4 3 1 -6.78904614329238 LTS-034 chr14 107179264 107198951 19688 * character(0) NA 0 NA 0.684 1 NA NA NA NA NA LTS-034 chr14 107198952 107283157 84206 * character(0) 0.4025 2 0.00636396103067889 0.671556325381536 45 0.121495969921108 5 3 2 -8.86838222321455 LTS-034 chr15 20169987 20446043 276057 * character(0) 0.345 1 NA 0.813741799231506 23 0.101859625952629 2 2 0 -5.82591006494424 LTS-034 chr15 20446044 22369367 1923324 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.310608946128464 21 0.110905171849004 0.945587879097728 179 0.461612014438213 3 2 1 -6.91997774081072 LTS-034 chr15 22369368 22369426 59 * c(OR4M2, LOC727924) 0.25 1 NA 2.415 1 NA NA NA NA NA LTS-034 chr15 22369427 22414262 44836 * c(OR4N4, OR4M2, OR4N3P, LOC727924) 0.280342019452318 5 0.0604747881352221 1.51964170422024 41 0.759818260523127 4 3 1 -6.73440982219587 LTS-034 chr15 22414263 22414269 7 * OR4N3P NA 0 NA 0.793 1 NA NA NA NA NA LTS-034 chr15 22414270 22448436 34167 * OR4N3P 0.332598271761386 2 0.162634559672906 1.04951432827183 20 0.436265162607861 3 2 1 -6.75047810769288 LTS-034 chr15 22448437 22466126 17690 * character(0) 0.432 1 NA 1.00833923714291 3 0.468744066629115 3 3 0 -5.76452561958683 LTS-034 chr15 22466127 23299152 833026 * c(GOLGA8DP, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, HERC2P2, REREP3, NIPA2) 0.449150900637263 19 0.0488840973196829 0.765004482320321 648 0.308575796618071 2 1 1 -6.76276237294656 LTS-034 chr15 23299153 23299818 666 * HERC2P2 NA 0 NA 2.012 1 NA NA NA NA NA LTS-034 chr15 23299819 23687743 387925 * c(HERC2P7, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.174447524928772 4 0.129831621725988 1.37260670792688 45 0.543844162170812 6 5 1 -6.84414651875935 LTS-034 chr15 23687744 23688912 1169 * character(0) NA 0 NA 0.663 1 NA NA NA NA NA LTS-034 chr15 23688913 50751389 27062477 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-034 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, MIR147B, LOC100128714, GABPB1-AS1, SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, LOC100289656, MIR1282, NDUFAF4P1, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SERF2-C15ORF63, MIR4508, MIR4510, MIR4716, MIR4712, MIR4715, TMCO5B, LOC100996255, RASGRP1, SERF2, SLC27A2, GPR176, CHP1, CHST14, CASC4, CHRM5, OIP5, CHRNA7, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, PWAR1, TERB2, NA, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, DUT, FAM227B, UBR1, PATL2, EPB42, FBN1, FGF7, BAHD1, FAN1, CEP152, MAPKBP1, GOLGA8A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RTF1, MGA, VPS39, FAM189A1, CCNDBP1, EID1, NPAP1, LPCAT4, PLA2G4F, LRRC57, GABPB1, GABRA5, GABRB3, NUTM1, GABRG3, HYPK, GALK2, GANC, TMEM87A, RPAP1, DKFZP434L187, BLOC1S6, GATM, GCHFR, GREM1, RPUSD2, TUBGCP4, HMGN2P46, SLC24A5, LOC283710, FAM98B, PLA2G4D, PDIA3, HDC, EHD4, APBA2, SNORD109B, SNORD115-1, FMN1, PWAR4, PWARSN, MRPL42P5, IPW, ITPKA, IVD, C15orf52, HERC2P10, SHC4, CTXN2, C15orf53, C15orf54, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DUOXA2, LTK, MIR211, MAP1A, MEIS2, MFAP1, TRPM1, HERC2P9, WHAMMP2, GOLGA8B, EIF2AK4, CATSPER2P1, NDN, OCA2, LINC00929, DUOX2, MYEF2, NDUFAF1, NUSAP1, EMC4, SPTBN5, CTDSPL2, KLF13, PLCB2, DUOX1, MAGEL2, DLL4, INO80, CKMT1A, PPP1R14D, MTMR10, ZNF770, FLJ10038, HAUS2, RMDN3, DNAJC17, NOP10, NSMCE3, B2M, EMC7, PAK6, DTWD1, KNL1, AVEN, ATP10A, GJD2, STARD9, VPS18, SQRDL, RAD51, SERINC4, RYR3, C15orf62, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF106, SCG5, C15orf56, PHGR1, EIF3J-AS1, PDCD6IPP2, GOLGA8T, SLC12A1, SNRPN, SORD, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, SNORD116-19, GOLGA8O, GOLGA6L7P, PIN4P1, OIP5-AS1, TYRO3, UBE3A, MKRN3, SLC30A4, SPATA5L1, CHAC1, PWRN1, PWRN2, KATNBL1, ATP8B4, WDR76, TMEM62, SEMA6D, SPG11, ELL3, PWAR5, CAPN3, C15orf48, C15orf41, ZFYVE19, FRMD5, DISP2, EIF3J, JMJD7-PLA2G4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SNAP23, HERC2, SNURF, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, SHF, DUOXA1, USP8, SLC28A2, COPS2, TGM5, PPIP5K1, AQR, SECISBP2L, ARHGAP11A, LCMT2, SLC12A6) 0.440592363396695 358 0.0732651799329934 0.751764012659336 22063 0.216729411399262 2 1 1 -6.83003867550106 LTS-034 NA NA NA NA LTS-034 chr15 50751390 50875445 124056 * c(USP50, TRPM7, USP8) 0.367914681806728 3 0.0525388744962559 0.995326717466586 278 0.217503601943569 3 2 1 -6.75140979482229 LTS-034 chr15 50875446 50878534 3089 * TRPM7 NA 0 NA 0.698 1 NA NA NA NA NA LTS-034 chr15 50878535 68484056 17605522 * c(LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, MIR2116, MIR4311, IQCH-AS1, DYX1C1-CCPG1, MIR4713, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, LACTB, DIS3L, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, C15orf61, CYP19A1, DYX1C1, MGC15885, LCTL, ZNF609, DMXL2, AP4E1, DAPK2, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, NA NA NA NA NA NA NA NA NA LTS-034 TMOD2, ANXA2, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MNS1, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 RPL4, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, SPPL2A, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.440947194672649 263 0.0620647040331382 0.743031693651971 14555 0.200082575390572 2 1 1 -6.94142702372305 LTS-034 NA NA NA NA LTS-034 chr15 68484057 72226121 3742065 * c(NR2E3, MIR548H4, MIR4312, FEM1B, CORO2B, DRAIC, CT62, ITGA11, SPESP1, GLCE, EWSAT1, LINC00593, MYO9A, LRRC49, PAQR5, CLN6, UACA, LARP6, THAP10, RPLP1, MIR629, TLE3, NOX5, THSD4, ANP32A-IT1, ANP32A, CALML4, KIF23) 0.461909409815723 59 0.0564514190420791 0.784503638375274 2622 0.188960365789162 2 1 1 -6.87823129731632 LTS-034 chr15 72226122 72227669 1548 * MYO9A NA 0 NA 1.097 1 NA NA NA NA NA LTS-034 chr15 72227670 72700216 472547 * c(SENP8, GRAMD2, HEXA, TMEM202, MYO9A, PKM, PARP6, CELF6, HEXA-AS1) 0.366408722332431 10 0.0644281684427618 1.04781861737961 621 0.225854671704544 3 2 1 -6.73891460269498 LTS-034 chr15 72700217 72743109 42893 * TMEM202 NA 0 NA 0.752 1 NA NA NA NA NA LTS-034 chr15 72743110 90818965 18075856 * c(DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1276, MIR1179, MIR4313, NA, UBE2Q2L, LINC00933, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR4513, MIR3529, MIR4515, SCAMP2, SNUPN, MIR5003, MIR5094, TSPAN3, AP3S2, HMG20A, SEMA4B, CIB2, CIB1, MTHFS, ARID3B, MORF4L1, ABHD2, ADAMTS7, AKAP13, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, HIGD2B, TMEM266, AGBL1, HYKK, WHAMM, FSD2, CRABP1, CSK, HAPLN3, MESP2, NRG4, NA NA NA NA NA NA NA NA NA LTS-034 LINC00052, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, ACAN, SCAMP5, ETFA, FAH, TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, MIR9-3HG, SNX33, ARIH1, SIN3A, ULK3, FBXO22, MRPL46, NPTN, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, NTRK3-AS1, LINC00928, ANPEP, LOC338963, IDH2, IDH3A, GOLGA6A, TMC3, ARPIN, IL16, IREB2, ISG20, ISLR, GOLGA6L5P, KIF7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF710, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, GDPGP1, ADAMTS7P1, ST20, LOXL1, MIR184, MIR7-2, MIR9-3, MAN2C1, MFGE8, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, NEO1, NMB, NTRK3, SCAPER, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, PML, POLG, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, DET1, FANCI, IMP3, DNAJA4, GOLGA6B, MESP1, PSMA4, C15orf39, WDR93, FAM219B, ADAMTSL3, CEMIP, ALPK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, RLBP1, PPCDC, STRA6, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, AEN, ISL2, EFTUD1P1, MRPS11, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR630, MIR631, AGBL1-AS1, LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, LINC00597, ADPGK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PEX11A, TICRR, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, ARNT2) 0.448217709037257 347 0.0682436412139683 0.761497954765928 15293 0.244926294202519 2 1 1 -6.7486685188131 LTS-034 NA NA NA NA LTS-034 chr15 90818966 90892066 73101 * GABARAPL3 NA 0 NA 0.494 1 NA NA NA NA NA LTS-034 chr15 90892067 90999588 107522 * c(GABARAPL3, ZNF774, IQGAP1) NA 0 NA 0.450470874140084 159 0.0871110000374332 1 NA NA -5.77996477786957 LTS-034 chr15 90999589 91009236 9648 * IQGAP1 NA 0 NA 0.826 1 NA NA NA NA NA LTS-034 chr15 91009237 101569458 10560222 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, MIR4714, SPATA8-AS1, CHD2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, FES, SYNM, VPS33B, SLCO3A1, FAM169B, IGF1R, HDDC3, SPATA41, FAM174B, LINC01197, MAN2A2, MEF2A, LOC440311, PRKXP1, FURIN, LINS1, MCTP2, UNC45A, RGMA, BLM, NR2F2-AS1, CRTC3, TTC23, NR2F2, HSP90B2P, ASB9P1, LRRK1, ST8SIA2, IQGAP1, PRC1, NA NA NA NA NA NA NA NA NA LTS-034 RCCD1, ARRDC4, LINC00923, SV2B) 0.443860231212829 127 0.0675139882370612 0.766585804611339 4993 0.302063309779922 2 1 1 -6.73768407003212 LTS-034 NA NA NA NA LTS-034 chr15 101569459 101586200 16742 * LRRK1 NA 0 NA 1.259 1 NA NA NA NA NA LTS-034 chr15 101586201 102029587 443387 * c(LOC100507472, CHSY1, PCSK6, SELENOS, SNRPA1, LRRK1) 0.330481965711453 9 0.0305468674516899 0.9934447275396 485 0.18330454887492 3 2 1 -7.29048804548585 LTS-034 chr15 102029588 102029597 10 * PCSK6 0.458 1 NA 0.512 1 NA NA NA NA NA LTS-034 chr15 102029598 102516492 486895 * c(FAM138E, TARSL2, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P, PCSK6, TM2D3) 0.392980704930532 13 0.0900455013184574 0.758579755365028 341 0.183303658462662 2 1 1 -6.88144932328488 LTS-034 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.53 1 NA NA NA NA NA LTS-034 chr16 81704 109665 27962 * c(POLR3K, RHBDF1, SNRNP25) 0.351 1 NA 0.763211459153944 112 0.288571191579123 2 2 0 -5.76441073128113 LTS-034 chr16 109666 1621442 1511777 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, TSR3, WFIKKN1, CLCN7, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSD1, TPSG1, DECR2, NHLRC4, C16orf91, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NME4, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, PDIA2, UNKL, LMF1, FAM173A, CAPN15, SSTR5, TPSAB1, MIR662, UBE2I, METRN, NA NA NA NA NA NA NA NA NA LTS-034 TMEM204, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, PIGQ, RAB11FIP3, IFT140, TELO2) 0.436308844575025 136 0.0697285614127271 0.766329816197199 4708 0.184948377519336 2 1 1 -6.73363825195323 LTS-034 NA NA NA NA LTS-034 chr16 1621443 1779166 157724 * c(MAPK8IP3, CRAMP1, HN1L, IFT140) NA 0 NA 0.473311408862686 430 0.102243046164365 1 NA NA -5.76480810066062 LTS-034 chr16 1779167 2649009 869843 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, HAGH, IGFALS, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, RPL3L, RPS2, MLST8, HS3ST6, LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, SNHG9, CEMP1, NA NA NA NA NA NA NA NA NA LTS-034 C16orf59, FAHD1, TRAF7, CCNF, ZNF598, SPSB3, SYNGR3, SLC9A3R2) 0.428955452385834 55 0.0913996294078497 0.76550083402417 2830 0.176400641061748 2 1 1 -6.73924491498101 LTS-034 NA NA NA NA LTS-034 chr16 2649010 2649014 5 * PDPK1 NA 0 NA 0.754 1 NA NA NA NA NA LTS-034 chr16 2649015 2650578 1564 * PDPK1 0.387879351015221 2 0.00707106781186552 1.2437230111947 39 0.362710680552386 13 8 5 -6.74351313064507 LTS-034 chr16 2650579 2650690 112 * PDPK1 NA 0 NA 0.327 1 NA NA NA NA NA LTS-034 chr16 2650691 2692449 41759 * c(PDPK1, FLJ42627, LOC652276) NA 0 NA 0.513321641724638 64 0.271284538068866 1 NA NA -5.76703216917512 LTS-034 chr16 2692450 2728737 36288 * c(ERVK13-1, FLJ42627) NA 0 NA 0.123768519797315 48 0.186701395024931 0 NA NA -5.8404634340328 LTS-034 chr16 2728738 2747930 19193 * KCTD5 NA 0 NA 0.531898156506237 44 0.296545762077866 1 NA NA -5.76640114944937 LTS-034 chr16 2747931 23221183 20473253 * c(MIR365A, LOC100128770, SRRM2-AS1, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR548X, MTRNR2L4, MIR3180-4, MIR548AA2, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, SNX29P1, ZNF263, TRAP1, COQ7, IGSF6, CDR2, PRSS21, ERI2, FLYWCH2, VASN, ADCY9, RMI2, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, ZG16B, PRSS30P, PAQR4, GPR139, ANKS3, UBALD1, SEPT12, CREBBP, CRYM, VWA3A, OTOA, TEKT5, ZNF597, BICDL2, NA NA NA NA NA NA NA NA NA LTS-034 C16orf89, C16orf71, ITPRIPL2, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, PDILT, ERCC4, PDXDC1, SMG1, CLUAP1, NPIPB3, ARL6IP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, MPV17L, PDZD9, ANKS4B, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, GP2, NOMO2, LINC00514, LINC00921, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, EEF2K, CDIP1, HMOX2, PKD1P1, C16orf96, ACSM2B, PRSS41, ABCC6, SLC7A5P2, BCAR4, KNOP1, CRYM-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NOMO3, MEFV, CIITA, ABCC1, SMIM22, MYH11, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, METTL9, NAGPA, BFAR, TNFRSF12A, GDE1, GPRC5B, SYT17, PMM2, KCTD5, RRN3, RBFOX1, NDE1, ZSCAN32, PPL, HCFC1R1, ACSM5, CPPED1, DNAH3, THUMPD1, POLR3E, ALG1, PRM1, PRM2, C16orf62, TMEM159, LYRM1, NMRAL1, MIR193B, USP31, MKL2, PRM3, TNFRSF17, MIR484, RPS15A, ACSM3, SCNN1G, SRL, PRSS22, SMG1P1, XYLT1, NPIPA3, MMP25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 C16orf90, ABCC6P1, LOC653786, TCEB2, MIR548D2, TFAP4, TNP2, CLEC19A, SHISA9, ABCC6P2, RRN3P1, C16orf52, UMOD, UQCRC2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, ZP2, TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, TMC5, NAA60, TMC7, ATF7IP2, LOC81691, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, C16orf45, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NPIPA1, LITAF, KIAA0430, SEC14L5, CCP110, HS3ST2) 0.443776360613021 393 0.0557494967447038 0.767063843560414 14670 0.282084028770889 2 1 1 -6.74063128657723 LTS-034 NA NA NA NA LTS-034 chr16 23221184 23221238 55 * SCNN1G 0.439 1 NA 2.623 1 NA NA NA NA NA LTS-034 chr16 23221239 24373769 1152531 * c(CACNG3, ERN2, EARS2, GGA2, NDUFAB1, PLK1, PRKCB, UBFD1, SCNN1B, SCNN1G, CHP2, PALB2, DCTN5, COG7) 0.344337488544395 19 0.210618818128171 0.746875905547884 1408 0.323210415876567 2 1 1 -6.85359927291724 LTS-034 chr16 24373770 24582299 208530 * RBBP6 0.494 1 NA 0.759367012032348 127 0.242764239676052 2 2 0 -5.76450745946886 LTS-034 chr16 24582300 28608392 4026093 * c(LCMT1-AS2, SGF29, SLC5A11, CLN3, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL27, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, APOBR, RBBP6, SULT1A2, KDM8, HS3ST4) 0.446483380825269 50 0.0401873165086108 0.755118330558704 2116 0.178430626677467 2 1 1 -6.76976517555196 LTS-034 chr16 28608393 28712734 104342 * SULT1A1 0.431540401035644 14 0.0689467464508214 0.507801389897896 89 0.262093776833701 2 1 1 -6.88751792718431 LTS-034 chr16 28712735 28734495 21761 * character(0) NA 0 NA 0.85 1 NA NA NA NA NA LTS-034 chr16 28734496 29367277 632782 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.414706985388739 27 0.124124730484899 0.779045891280433 873 0.216269440648745 2 1 1 -6.75739555793532 LTS-034 chr16 29367278 29624350 257073 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.339806798898082 39 0.329655095184917 1 NA NA -5.91047904896082 LTS-034 chr16 29624351 29624403 53 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.082 1 NA NA NA NA NA LTS-034 chr16 29624404 30217589 593186 * c(SLX1B-SULT1A4, CDIPT, CORO1A, PRRT2, TMEM219, C16orf92, ALDOA, QPRT, KCTD13, ASPHD1, SEZ6L2, C16orf54, INO80E, KIF22, MAZ, SMG1P2, CDIPT-AS1, SULT1A4, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, ZG16, SPN, TBX6, GDPD3, PAGR1, SLC7A5P1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.439397139143694 18 0.113680149852946 0.738864901437834 1627 0.163233887052333 2 1 1 -6.74862077386076 LTS-034 chr16 30217590 30347601 130012 * c(SMG1P2, SMG1P5, LOC613037, LOC613038) NA 0 NA 1.128 1 NA NA NA NA NA LTS-034 chr16 30347602 30441455 93854 * c(CD2BP2, SEPT1, ZNF48, TBC1D10B, MYLPF, ZNF771, DCTPP1) NA 0 NA 1.04737485842202 369 0.218276935010563 3 NA NA -5.76455091448782 LTS-034 chr16 30441456 30454960 13505 * SEPHS2 NA 0 NA 0.533 1 NA NA NA NA NA LTS-034 chr16 30454961 31512077 1057117 * c(MIR762, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, SRCAP, STX1B, ZNF689, COX6A2, ZNF785, ZNF688, PRSS36, CTF1, SEPHS2, ZNF629, FUS, PYDC1, FBXL19-AS1, ZNF843, PYCARD, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, TRIM72, PHKG2, FBXL19, PRSS8, FBRS, C16orf58, SLC5A2, ZNF747, SNORA30, STX4, TGFB1I1, LOC730183, PRR14, VKORC1, ZNF768, ZNF668, ARMC5, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, NA NA NA NA NA NA NA NA NA LTS-034 RNF40) 0.459725653424078 53 0.039720458255965 0.74965663113714 3472 0.167670467275664 2 1 1 -6.91229834179382 LTS-034 NA NA NA NA LTS-034 chr16 31512078 31518980 6903 * C16orf58 NA 0 NA 0.622 1 NA NA NA NA NA LTS-034 chr16 31518981 31993328 474348 * c(CLUHP3, ZNF267, ZNF720, YBX3P1, AHSP, C16orf58) 0.439 1 NA 0.685512840710311 281 0.126700871359489 2 2 0 -5.96830509983154 LTS-034 chr16 31993329 33424787 1431459 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.329 1 NA 0.634719018154616 105 0.330875926526211 2 2 0 -6.02443332056944 LTS-034 chr16 33424788 33961325 536538 * LINC00273 0.329837901817204 6 0.0816765980355859 0.700183758585419 103 0.279726431789917 3 2 1 -7.44797399331728 LTS-034 chr16 33961326 33962387 1062 * LINC00273 0.310900285855261 59 0.0976420842764971 1.34996981428694 85 0.499735111066346 10 7 3 -6.73482327081316 LTS-034 chr16 33962388 33965500 3113 * LINC00273 NA 0 NA 0.618 1 NA NA NA NA NA LTS-034 chr16 33965501 33965652 152 * character(0) 0.340377814892411 5 0.153956162591824 0.68663440102562 15 0.223902019387308 6 4 2 -6.73647037463171 LTS-034 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.801998577391825 115 0.177374165277836 2 NA NA -5.79554502007499 LTS-034 chr16 46508169 46602819 94651 * ANKRD26P1 0.485 1 NA 0.816296928414948 97 0.194266568329311 2 2 0 -5.77086347783931 LTS-034 chr16 46602820 55813699 9210880 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, CES1P2, MMP2, CES1P1, PHKB, LPCAT2, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, SLC6A2, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, CAPNS2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.449502456038758 81 0.061131607673855 0.757119365971607 4604 0.189595469275503 2 1 1 -6.76785319281586 LTS-034 chr16 55813700 55844456 30757 * CES1 NA 0 NA 1.356 1 NA NA NA NA NA LTS-034 chr16 55844457 55867046 22590 * CES1 0.265449088506837 2 0.00636396103067893 1.1084638535618 53 0.234401767653841 8 6 2 -6.95150594073116 LTS-034 chr16 55867047 55880040 12994 * CES1 NA 0 NA 0.666 1 NA NA NA NA NA LTS-034 chr16 55880041 70163059 14283019 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, KATNB1, CTCF, CETP, NFAT5, NUDT21, WWP2, CMTM1, NRN1L, CMTM3, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, CES3, ARL2BP, EDC4, PLA2G15, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, GNAO1, GOT2, TERB1, CES4A, NA NA NA NA NA NA NA NA NA LTS-034 EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, LOC388282, C16orf86, LCAT, MIR138-2, MIR140, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, POLR2C, PRMT7, DUS2, CHTF8, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RRAD, CCL17, CCL22, CX3CL1, PDF, DPEP2, DPEP3, MT1IP, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, COG8, MT4, B3GNT9, UTP4, CBFB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.446717408818828 206 0.0673818839217412 0.764414302349556 11684 0.512916128639707 2 1 1 -6.74250747604479 LTS-034 NA NA NA NA LTS-034 chr16 70163060 70163654 595 * c(CLEC18C, PDPR) NA 0 NA 0.476 1 NA NA NA NA NA LTS-034 chr16 70163655 70219827 56173 * c(CLEC18C, PDPR) NA 0 NA 0.543710143600165 98 0.132632640459955 1 NA NA -5.8045846001782 LTS-034 chr16 70219828 70237373 17546 * CLEC18C NA 0 NA 0.922 1 NA NA NA NA NA LTS-034 chr16 70237374 71167220 929847 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.429626696830071 93 0.0606828506943803 1.06024034347113 1783 0.209804662292151 4 2 2 -7.41812538476895 LTS-034 chr16 71167221 71237702 70482 * HYDIN 0.329 1 NA 1.00110444359195 43 0.236805465202864 3 3 0 -5.76678231789919 LTS-034 chr16 71237703 74385310 3147608 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, PHLPP2, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, ZFHX3, HYDIN, TXNL4B, ZNF821, CMTR2, PSMD7, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.360431658988608 43 0.045294764878073 1.04957015473651 2262 0.230659012005642 3 2 1 -6.73579121979793 LTS-034 chr16 74385311 74385903 593 * LOC283922 NA 0 NA 0.528 1 NA NA NA NA NA LTS-034 chr16 74385904 74452121 66218 * c(LOC283922, CLEC18B) NA 0 NA 0.516100857140161 43 0.367419119703656 1 NA NA -5.76696430717741 LTS-034 chr16 74452122 74485832 33711 * c(GLG1, CLEC18B) NA 0 NA 0.838 1 NA NA NA NA NA LTS-034 chr16 74485833 90126993 15641161 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, NA NA NA NA NA NA NA NA NA LTS-034 MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 BANP, RFWD3, ZDHHC7, CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.357587882398264 283 0.065979899718624 1.03774417464911 10622 0.430632003408733 3 2 1 -6.75457389605506 LTS-034 NA NA NA NA LTS-034 chr16 90126994 90161242 34249 * PRDM7 NA 0 NA 0.991295508256283 51 0.151919199370109 3 NA NA -5.76827936707337 LTS-034 chr17 6004 767355 761352 * c(DBIL5P, LOC100506388, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, DOC2B, RPH3AL) 0.379 1 NA 0.771742080831798 595 0.195652007701405 2 2 0 -5.76546313185478 LTS-034 chr17 767356 15499986 14732631 * c(MIR744, LOC100128288, C17orf107, LOC100130950, LINC00675, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, TRIM16, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, USP43, NA NA NA NA NA NA NA NA NA LTS-034 KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, COX10, CLDN7, CRK, DNAH2, RTN4RL1, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, ITGAE, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, OR3A4P, SLC25A35, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, MED31, DERL2, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPA1, RPL26, SCO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF18, ZNF232, MIS12, METTL16, PHF23, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MGC12916, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.188372546298682 73 0.0997196126223548 0.758406331525025 18679 0.186156048269074 2 2 0 -7.05767011933595 LTS-034 NA NA NA NA LTS-034 chr17 15499987 15501845 1859 * c(TRIM16, CDRT1) NA 0 NA 0.291 1 NA NA NA NA NA LTS-034 chr17 15501846 15535993 34148 * c(TRIM16, CDRT1) NA 0 NA 0.589792862302149 89 0.201173859780638 1 NA NA -5.79030361122282 LTS-034 chr17 15535994 15539344 3351 * TRIM16 NA 0 NA 1.422 1 NA NA NA NA NA LTS-034 chr17 15539345 15613303 73959 * c(TRIM16, ZNF286A) 0.244686159565968 2 0.00707106781186548 1.05920630858375 87 0.730869678009443 13 10 3 -6.92719645632871 LTS-034 chr17 15613304 15619200 5897 * ZNF286A NA 0 NA 0.682 1 NA NA NA NA NA LTS-034 chr17 15619201 17750419 2131219 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, ADORA2B, SMCR5, NA, TOM1L2, USP32P1, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, KRT16P2, MEIS3P1, TRPV2, RASD1, TTC19, MED9, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, SREBF1, SNORD49B, SNORD65, MIR33B, UBB, COPS3, PIGL, NCOR1, CCDC144A) 0.117956000286704 7 0.053967362270878 0.759221896619097 2269 0.171858391139594 2 2 0 -6.7368952273746 LTS-034 chr17 17750420 17898529 148110 * c(TOM1L2, DRC3) NA 0 NA 0.756335680675831 143 0.2011917132639 2 NA NA -5.76466480833201 LTS-034 chr17 17898530 17900738 2209 * DRC3 NA 0 NA 0.417 1 NA NA NA NA NA LTS-034 chr17 17900739 17929707 28969 * c(DRC3, ATPAF2) NA 0 NA 0.439072980478104 74 0.0827147984030739 1 NA NA -5.77629196835366 LTS-034 chr17 17929708 18314964 385257 * c(MIEF2, SMCR8, DRG2, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A, GID4, ATPAF2) 0.425 1 NA 0.792235801970891 1315 0.169651259644634 2 2 0 -5.77457320868798 LTS-034 chr17 18314965 21194779 2879815 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, NATD1, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, MAP2K3, PRPSAP2, FAM83G, KRT16P3, LGALS9C, SNORA59A, KRT16P1, ZNF286B, RNF112, FAM106A, TMEM11, SPECC1, ULK2) 0.404109013585405 8 0.131491444588612 0.765811421353263 2619 0.196782437484179 2 1 1 -6.77331634927416 LTS-034 chr17 21194780 22066835 872056 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.318837893692611 96 0.0738896217755941 1.11424660258858 432 0.314488778499346 3 2 1 -6.9305266627432 LTS-034 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.883 1 NA NA NA NA NA LTS-034 chr17 25620838 26092653 471816 * c(MIR4522, WSB1, LGALS9, TBC1D3P5, NOS2, KSR1) 0 1 NA 0.789184772212682 403 0.238539174259974 2 2 0 -5.76941942985905 LTS-034 chr17 26092654 27067660 975007 * c(SPAG5-AS1, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, TMEM199, PROCA1, LYRM9, ALDOC, SARM1, PPY2P, PYY2, POLDIP2, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, NOS2, NLK, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, IFT20, SLC13A2, UNC119, PIGS, KIAA0100) 0.064 1 NA 0.827211837231369 2048 0.188476685672836 2 2 0 -5.86497562285226 LTS-034 chr17 27067661 27067877 217 * NEK8 NA 0 NA 0.562 1 NA NA NA NA NA LTS-034 chr17 27067878 36214044 9146167 * c(MIR365B, MIR2909, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4725, CCT6B, DDX52, DUSP14, SYNRG, LRRC37B, ABHD15, RFFL, TMEM132E, SPACA3, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, FLOT2, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, ERAL1, AATF, NEK8, PIGW, C17orf78, YWHAEP7, GIT1, NA NA NA NA NA NA NA NA NA LTS-034 ACACA, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, CCL4L1, LHX1, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, TBC1D3B, TBC1D3C, CCL3L3, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RAD51D, CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, NA, TADA2A, SNORD7, HNF1B, MIR632, TBC1D3H, ZNF207, MMP28, DHRS11, TEFM, GGNBP2, ATAD5, MRM1, MYO19, TAF15, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, ZNF830, SLFN11, RASL10B, TIAF1, ZNHIT3, GOSR1, TRAF4) 0.162258506031033 16 0.125434959906187 0.741240593062287 9159 0.180521607891499 2 2 0 -6.97384845532826 LTS-034 NA NA NA NA LTS-034 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.348 1 NA NA NA NA NA LTS-034 chr17 36214814 36474692 259879 * c(YWHAEP7, LOC440434, MRPL45) 0.211307371890914 2 0.0997020561473032 0.589238434657578 99 0.160171354207673 1 1 0 -7.06310741740027 LTS-034 chr17 36474693 36476454 1762 * MRPL45 NA 0 NA 0.805 1 NA NA NA NA NA LTS-034 chr17 36476455 44172117 7695663 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-034 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, KLHL11, PPY, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.236218796931333 28 0.139963312464298 0.765700540802412 14869 0.195456831493291 2 2 0 -7.15247635919904 LTS-034 NA NA NA NA LTS-034 chr17 44172118 44364336 192219 * character(0) 0.195773461539671 4 0.04002082791081 0.488694819017323 73 0.135495376141992 1 1 0 -6.77097109579342 LTS-034 chr17 44364337 44408491 44155 * character(0) NA 0 NA 1.116 1 NA NA NA NA NA LTS-034 chr17 44408492 48154718 3746227 * c(MIR1203, MIR3185, MIR5089, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, NA NA NA NA NA NA NA NA NA LTS-034 PHB, PNPO, UBE2Z, MRPL45P2, SP2, FLJ45513, WNT3, WNT9B, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.29519065322182 23 0.12518672219936 0.74324022080548 4263 0.341608410175035 2 1 1 -7.44443266356167 LTS-034 NA NA NA NA LTS-034 chr17 48154719 50008516 1853798 * c(TOB1, CHAD, WFIKKN2, COL1A1, EME1, TMEM92, SAMD14, CACNA1G-AS1, ITGA3, HILS1, TOB1-AS1, NME1, NME2, UTP18, MRPL27, PDK2, LUC7L3, MBTD1, LINC00483, EPN3, RSAD1, LRRC59, CA10, XYLT2, SGCA, SPATA20, NME1-NME2, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.0826644503945193 7 0.0428830080679094 0.778787603143507 2974 0.175393821022323 2 2 0 -7.0689575992568 LTS-034 chr17 50008517 50149674 141158 * CA10 NA 0 NA 1.288 1 NA NA NA NA NA LTS-034 chr17 50149675 63534028 13384354 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR3064, MIR5047, DCAF7, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, COX11, DYNLL2, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, ANKFN1, MARCH10, ACE, DDX5, AMZ2P1, ERN1, PPM1E, MMD, MTVR2, STXBP4, TANC2, OR4D1, GH1, GH2, MILR1, C17orf47, GDPD1, HLF, ICAM2, METTL2A, C17orf67, NACA2, SKA2, NA NA NA NA NA NA NA NA NA LTS-034 LRRC37A3, RNF126P1, YPEL2, C17orf82, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, TRIM37, RNFT1, TUBD1, TACO1, MRPS23, PTRH2, PECAM1, SEPT4, BCAS3, RNF43, MKS1, SMG8, TMEM100, MSX2P1, PRR11, TEX2, TEX14, CA10, CCDC47, PSMC5, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, SCN4A, HEATR6, SRSF1, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, SUPT4H1, TBX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SNORD104, LOC729683, CA4, MIR454, TRIM25, VEZF1, DHX40, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, KIF2B, USP32, PPM1D, DGKE, RGS9, CEP95, MTMR4, STRADA, PRR29, NOG, TSPOAP1, TBX4, CD79B, MRC2, MED13) 0.342586771969945 3 0.102050641023628 1.04872786143343 7714 0.267019459441868 3 2 1 -6.76159814954166 LTS-034 NA NA NA NA LTS-034 chr17 63534029 63534295 267 * AXIN2 NA 0 NA 0.366 1 NA NA NA NA NA LTS-034 chr17 63534296 63848187 313892 * c(CEP112, AXIN2) NA 0 NA 0.476986263732718 63 0.0870646451331174 1 NA NA -5.76953246338781 LTS-034 chr17 63848188 63898259 50072 * CEP112 NA 0 NA 1.042 1 NA NA NA NA NA LTS-034 chr17 63898260 67149731 3251472 * c(SNORA38B, LINC00674, MIR4524A, MIR4524B, ABCA10, ABCA9, ABCA8, CEP112, BPTF, ARSG, ABCA6, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PRKCA, PSMD12, MIR634, MIR635, CACNG1, SLC16A6, HELZ) 0.0355016411162466 2 0.0834386001800126 1.05885964743634 2049 0.251337329828278 3 3 0 -6.92188671108392 LTS-034 chr17 67149732 67149939 208 * ABCA10 NA 0 NA 1.397 1 NA NA NA NA NA LTS-034 chr17 67149940 70845876 3695937 * c(LINC00673, ABCA10, SLC39A11, ABCA5, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, MAP2K6, SOX9) NA 0 NA 1.1883978566679 568 0.287746740291358 3 NA NA -6.10145001864388 LTS-034 chr17 70845877 73328898 2483022 * c(CD300LD, LOC100287042, MIR3615, ATP5H, CD300C, CD300A, USH1G, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, FDXR, GGA3, KCTD2, CDC42EP4, NAT9, LINC00469, FADS6, HID1, GRB2, GRIN2C, NT5C, CDR2L, RAB37, MRPL58, CD300E, OTOP3, GPR142, BTBD17, LOC400620, MRPS7, HN1, SDK2, TMEM104, C17orf80, GPRC5C, MIF4GD, SLC25A19, RPL38, CPSF4L, DNAI2, SUMO2, SSTR2, ARMC7, NUP85, FAM104A, MGC16275, SLC16A5, OTOP2, SLC9A3R1, NA NA NA NA NA NA NA NA NA LTS-034 COG1, TTYH2) 0.140693864759193 5 0.0985149734811922 0.999769300364905 3004 0.232320789572662 3 3 0 -7.02134978315037 LTS-034 NA NA NA NA LTS-034 chr17 73328899 73389515 60617 * GRB2 NA 0 NA 1.53 1 NA NA NA NA NA LTS-034 chr17 73389516 73519293 129778 * c(MIR3678, TSEN54, GRB2, CASKIN2, TMEM94) NA 0 NA 1.61923137995644 328 0.302187425138748 5 NA NA -5.76466650651372 LTS-034 chr17 73519294 76143051 2623758 * c(SMIM6, TNRC6C-AS1, C17orf99, MIR4316, RNF157-AS1, SNHG16, LOC100507351, MIR4738, CDK3, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, METTL23, MGAT5B, TMC8, AANAT, TRIM65, UNC13D, EVPL, FOXJ1, JMJD6, EXOC7, WBP2, GALK1, TSEN54, UBALD2, SAP30BP, H3F3B, ZACN, ITGB4, LLGL2, FLJ45079, MXRA7, ACOX1, ST6GALNAC1, PRPSAP1, TNRC6C, UBE2O, SEC14L1, SRSF2, SMIM5, MRPL38, SNHG20, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, NA NA NA NA NA NA NA NA NA LTS-034 MIR636, PRCD, MFSD11, RHBDF2, MYO15B, QRICH2, FBF1, UNK, GALR2, SPHK1, TRIM47, RECQL5) 0.0971064011896679 2 0.00494974746830583 0.992776238595049 4117 0.20199306179217 3 3 0 -9.76788119376292 LTS-034 NA NA NA NA LTS-034 chr17 76143052 76156084 13033 * C17orf99 NA 0 NA 1.259 1 NA NA NA NA NA LTS-034 chr17 76156085 76203838 47754 * c(C17orf99, AFMID, TK1, SYNGR2) NA 0 NA 1.25903129642683 177 0.21517419664041 4 NA NA -5.76762870415188 LTS-034 chr17 76203839 76210352 6514 * BIRC5 NA 0 NA 0.849 1 NA NA NA NA NA LTS-034 chr17 76210353 79899710 3689358 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, ALYREF, BAIAP2, C1QTNF1, PPP1R27, SLC38A10, CANT1, TBC1D16, TEPSIN, RBFOX3, SLC25A10, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, TMEM235, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, MAFG, BAIAP2-AS1, MIR338, NA NA NA NA NA NA NA NA NA LTS-034 NPTX1, P4HB, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, PYCR1, PCYT2, MRPL12, SGSH, ENGASE, TIMP2, ACTG1, MIR657, CARD14, CHMP6, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SOCS3, HGS, MAFG-AS1, CYTH1, PGS1, AATK, EIF4A3) 0.0618430093843505 3 0.102378383134983 0.988277963830036 5005 0.214071858113966 3 3 0 -6.98022744647962 LTS-034 NA NA NA NA LTS-034 chr17 79899711 80363278 463568 * c(CSNK1D, NOTUM, CENPX, LRRC45, FASN, MYADML2, UTS2R, CCDC57, GPS1, TEX19, DCXR, RAC3, RFNG, SECTM1, DUS1L, ASPSCR1, OGFOD3, SLC16A3, CD7) NA 0 NA 1.00291518788963 1190 0.213195957153531 3 NA NA -5.78239231324863 LTS-034 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.97724415470977 39 0.713947580077498 6 NA NA -5.76441905085149 LTS-034 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.873 1 NA NA NA NA NA LTS-034 chr17 80391535 81083625 692091 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) NA 0 NA 0.981114423302475 865 0.2101970217047 3 NA NA -5.81858621420997 LTS-034 chr18 116845 122072 5228 * ROCK1P1 0.415 1 NA 0.856259092852252 49 0.247034684212727 2 2 0 -5.76506996172144 LTS-034 chr18 122073 5290418 5168346 * c(DLGAP1-AS4, MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, LINC00526, DLGAP1-AS3, SMCHD1, CLUL1, DLGAP1-AS5, LINC00667, TYMSOS, ENOSF1, LINC00470, AKAIN1, CBX3P2, METTL4, DLGAP1-AS1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, ZBTB14, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.431274014433515 66 0.0719918734082524 0.788411093163855 1994 0.240667982340587 2 1 1 -6.78889140270221 LTS-034 chr18 5290419 8546051 3255633 * c(LINC01387, LOC100192426, MIR4317, MIR3976, EPB41L3, LAMA1, LRRC30, LINC00668, PTPRM, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4) 0.438356916035793 21 0.0660647229544453 0.890724098642269 1238 0.210003015476775 2 1 1 -7.62136477736174 LTS-034 chr18 8546052 8609754 63703 * RAB12 NA 0 NA 0.821 1 NA NA NA NA NA LTS-034 chr18 8609755 14866503 6256749 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.414885189432229 86 0.0579170358092997 0.820620095486614 3341 0.999024531324744 2 1 1 -6.84785720694904 LTS-034 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.927713789541199 33 0.285031261576266 3 NA NA -5.78239491180432 LTS-034 chr18 18529727 18529837 111 * ROCK1 0.229 1 NA 1.18863561074048 3 0.328953390822064 3 3 0 -5.76441828600028 LTS-034 chr18 18529838 19116163 586326 * c(ESCO1, ROCK1, GREB1L) 0.322 1 NA 1.33172249270741 396 0.285928626836396 4 4 0 -5.76551248318549 LTS-034 chr18 19116164 19119799 3636 * ESCO1 NA 0 NA 0.695 1 NA NA NA NA NA LTS-034 chr18 19119800 19321477 201678 * c(MIR320C1, ESCO1, ABHD3, MIB1, SNRPD1) 0.443543319842435 2 0.0205060966544099 0.783018800833594 137 0.14853672926212 2 1 1 -6.77599238497807 LTS-034 chr18 19321478 19321534 57 * MIB1 NA 0 NA 1.066 1 NA NA NA NA NA LTS-034 chr18 19321535 20513519 1191985 * c(GATA6-AS1, MIR4741, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, CTAGE1) 0.306391304563592 5 0.0354584263610217 1.02068001837445 388 0.211744362438864 3 2 1 -7.89679701284264 LTS-034 chr18 20513520 20516714 3195 * RBBP8 NA 0 NA 1.469 1 NA NA NA NA NA LTS-034 chr18 20516715 21485659 968945 * c(ANKRD29, C18orf8, LAMA3, NPC1, RBBP8, TMEM241, RIOK3, CABLES1) 0.259465057390967 5 0.0167720004769854 1.43732849181174 1018 0.323756928514942 4 3 1 -7.71232952269779 LTS-034 chr18 21485660 21487520 1861 * LAMA3 NA 0 NA 1.604 1 NA NA NA NA NA LTS-034 chr18 21487521 22059836 572316 * c(MIR320C2, OSBPL1A, TTC39C, CABYR, LAMA3, IMPACT, HRH4) 0.241081051444774 4 0.0582659134199977 1.70378157157487 616 0.590278569141764 5 4 1 -6.74854679666022 LTS-034 chr18 22059837 25531192 3471356 * c(CDH2, PSMA8, AQP4-AS1, ZNF521, KCTD1, AQP4, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) NA 0 NA 2.18230989528798 597 0.532204769475635 7 NA NA -5.76878896920156 LTS-034 chr18 25531193 25531278 86 * CDH2 NA 0 NA 1.648 1 NA NA NA NA NA LTS-034 chr18 25531279 25757424 226146 * CDH2 0.296 1 NA 1.57921658869091 121 0.355969383414325 5 5 0 -5.766331184437 LTS-034 chr18 27878858 32444073 4565216 * c(MIR302F, DSG2-AS1, SLC25A52, DSG4, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, ASXL3, NOL4, B4GALT6) 0.43674679934772 37 0.0897042605139486 0.861520689653426 2249 0.221275030482009 2 1 1 -7.44087998641753 LTS-034 chr18 32444074 32445958 1885 * DTNA NA 0 NA 1.108 1 NA NA NA NA NA LTS-034 chr18 32445959 33077984 632026 * c(ZSCAN30, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, ZNF24, ZNF397) 0.322975203655869 11 0.0619826955323383 1.15542342420607 672 0.319669118225656 3 2 1 -6.97192109919102 LTS-034 chr18 33077985 33171625 93641 * GALNT1 NA 0 NA 1.755 1 NA NA NA NA NA LTS-034 chr18 33171626 33831341 659716 * c(MIR3975, SLC39A6, GALNT1, MIR187, MOCOS, RPRD1A, ELP2, C18orf21) NA 0 NA 1.73040608700947 565 0.432986265972787 5 NA NA -5.76948855926318 LTS-034 chr18 33831342 33836860 5519 * MOCOS NA 0 NA 0.759 1 NA NA NA NA NA LTS-034 chr18 33836861 40849193 7012333 * c(MIR4318, MIR5583-2, MIR5583-1, TPGS2, LINC00907, PIK3C3, MOCOS, CELF4, KIAA1328, RIT2, KC6, MIR924HG, SYT4, FHOD3) 0.410827764820446 14 0.115257189711617 0.842555582128682 762 0.192684856448074 2 1 1 -7.68209564457162 LTS-034 chr18 40849194 40857645 8452 * SYT4 NA 0 NA 0.831442031027854 59 0.15555562260535 2 NA NA -5.76588503467882 LTS-034 chr18 41559242 41559321 80 * character(0) 0.311 1 NA 0.605 1 NA NA NA NA NA LTS-034 chr18 41559322 77926862 36367541 * c(SNORD58C, PARD6G-AS1, LOC100131655, LINC01630, MIR1539, MIR4319, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR4529, MIR3591, MIR4743, MIR4744, MIR5011, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, MALT1, TXNL4A, POLI, HAUS1, ALPK2, LOXHD1, FAM69C, STARD6, C18orf25, CCBE1, CBLN2, CYB5A, C18orf54, TCEB3C, DCC, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, NA NA NA NA NA NA NA NA NA LTS-034 LINC00305, FECH, ADNP2, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, GALR1, RTTN, SETBP1, KCNG2, SNORD58B, SNORD58A, SALL3, CDH20, DYNAP, BOD1L2, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, RAX, CXXC1, LOC339298, CPLX4, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, HSBP1L1, MYO5B, NARS, NFATC1, RNF165, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, DYM, ZCCHC2, ZNF532, ELAC1, ZNF407, CNDP2, MAPK4, KIAA1468, EPG5, RAB27B, BCL2, RPL17, SERPINB3, SERPINB4, LOC643542, C18orf63, SKOR2, SLC14A1, SCARNA17, SNORA37, TCF4, ZNF236, CCDC102B, RBFA, PQLC1, CCDC68, SLC14A2, NETO1, KATNAL2, MRO, HDHD2, PARD6G, CNDP1, SERPINB7, TNFRSF11A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CTDP1, DSEL, SOCS6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.292252280005463 284 0.073647928816781 0.534703571194457 13016 0.204348420014557 1 1 0 -11.8278967461446 LTS-034 NA NA NA NA LTS-034 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.462140147434368 17 0.065689387181152 1 NA NA -5.7676580949894 LTS-034 chr19 107416 282735 175320 * c(LINC01002, OR4F17, PLPP2) 0.265 1 NA 0.57782765899951 17 0.31911964149553 1 1 0 -5.807990682836 LTS-034 chr19 282736 1980402 1697667 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, NA NA NA NA NA NA NA NA NA LTS-034 AZU1, PTBP1, WDR18, REXO1, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, MADCAM1, ABHD17A, KLF16, KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.190478960481845 45 0.0684489192424142 0.453442732600227 3815 0.131056356150783 1 1 0 -6.81151610572906 LTS-034 NA NA NA NA LTS-034 chr19 1980403 1986462 6060 * c(CSNK1G2, BTBD2) NA 0 NA 0.916 1 NA NA NA NA NA LTS-034 chr19 1986463 2046731 60269 * c(MKNK2, BTBD2) 0.235 1 NA 0.785287137957112 102 0.148336877601138 2 2 0 -5.76558966800701 LTS-034 chr19 2046732 2050741 4010 * MKNK2 NA 0 NA 0.269 1 NA NA NA NA NA LTS-034 chr19 2050742 4670236 2619495 * c(C19orf71, MIR1227, CHAF1A, MIR4321, MIR4746, EBI3, HMG20B, SEMA6B, IZUMO4, ZNF554, MRPL54, LRG1, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, DIRAS1, ZNF555, DAPK3, AES, ANKRD24, EEF2, ZFR2, PIP5K1C, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MKNK2, SLC39A3, TMPRSS9, C19orf35, CACTIN-AS1, MATK, PLIN5, GADD45B, NFIC, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, PLEKHJ1, NA NA NA NA NA NA NA NA NA LTS-034 STAP2, CCDC94, MYDGF, MAP2K2, NCLN, SPPL2B, SHD, ZNF77, CACTIN, CELF5, SGTA, LINGO3, SH3GL1, TBXA2R, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, ZNF556, UBXN6, SF3A2, DOHH, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, ATCAY, S1PR4, AP3D1, APBA3) 0.179828803579875 52 0.0919827677480639 0.456941283420627 4515 0.164748706846557 1 1 0 -6.78358235945558 LTS-034 NA NA NA NA LTS-034 chr19 4670237 4792716 122480 * c(DPP9-AS1, MIR7-3HG, MIR7-3, FEM1A, MYDGF, DPP9) NA 0 NA 0.455777952076598 163 0.114722794042191 1 NA NA -5.76981177189088 LTS-034 chr19 4792717 4792922 206 * FEM1A NA 0 NA 0.626 1 NA NA NA NA NA LTS-034 chr19 4792923 4847868 54946 * c(PLIN3, TICAM1, FEM1A) 0.493 1 NA 0.793265462945992 79 0.126686851173692 2 2 0 -5.76720596848124 LTS-034 chr19 4847869 8032680 3184812 * c(LOC100128568, LOC100128573, PET100, SH2D3A, MIR3940, TGFBR3L, MIR4747, PLIN3, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, NDUFA11, ZNF358, ZNRF4, PRR22, ELAVL1, MCEMP1, ADGRE1, FCER2, KDM4B, ARHGEF18, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, SLC25A41, MBD3L5, UHRF1, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, HSD11B1L, C19orf45, LYPLA2P2, VMAC, CTXN1, MLLT1, CLEC4GP1, NA NA NA NA NA NA NA NA NA LTS-034 NRTN, FLJ25758, MAP2K7, PSPN, RETN, GPR108, DUS3L, XAB2, MCOLN1, CAMSAP3, PTPRS, RFX2, SAFB, ARRDC5, MBD3L4, MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, DENND1C, LRRC8E, PRR36, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, TNFSF14, TNFSF9, CRB3, PEX11G, TRIP10, LONP1, SAFB2, CD70) 0.436668046411497 144 0.0709167354873543 0.761669819335062 4756 0.207737471791804 2 1 1 -6.73394561628032 LTS-034 NA NA NA NA LTS-034 chr19 8032681 8067117 34437 * ELAVL1 NA 0 NA 0.759185626961811 23 0.225626970117202 2 NA NA -5.76443007720038 LTS-034 chr19 8067118 8117809 50692 * c(ELAVL1, CCL25) NA 0 NA 1.705 1 NA NA NA NA NA LTS-034 chr19 8117810 8137908 20099 * c(CCL25, FBN3) 0.207 1 NA 1.85111868711113 49 0.37532308304535 6 6 0 -5.76460633105182 LTS-034 chr19 8137909 11332592 3194684 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, RAB11B-AS1, ZNF559-ZNF177, AP1M2, MIR4748, MIR4999, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, RAVER1, OR7D4, OR7G1, OR1M1, ILF3-AS1, ZNF560, SPC24, ZNF558, ZNF846, OR7D2, DNM2, DNMT1, C19orf38, KANK3, KANK2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, C3P1, OR7G2, OR7G3, LDLR, MIR199A1, MYO1F, HNRNPM, NDUFA7, P2RY11, COL5A3, NA NA NA NA NA NA NA NA NA LTS-034 RDH8, MRPL4, ANGPTL4, MARCH2, CD320, PDE4A, PIN1, S1PR5, ZNF562, FBXL12, C19orf66, PPAN, SLC44A2, DOCK6, ZNF317, UBL5, RPS28, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, CERS4, ADAMTS10, QTRT1, ANGPTL6, PRAM1, ZNF414, FBN3, ZNF559, ATG4D, MBD3L1, EIF3G, C19orf52, RAB11B, S1PR2, ZNF561, OLFM2, MUC16, KEAP1) 0.233946278371016 24 0.0754239707408649 1.92391661560583 6190 0.488793725319386 6 5 1 -6.87527675497677 LTS-034 NA NA NA NA LTS-034 chr19 11332593 13414594 2082002 * c(ZNF625-ZNF20, ZNF443, RNASEH2A, KLF1, NACC1, CCDC151, ZNF653, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, DNASE2, ELAVL3, ZNF627, DAND5, EPOR, FARSA, MAST1, SYCE2, GCDH, TSPAN16, SNORD41, ZNF763, ZNF844, HOOK2, TNPO2, JUNB, TMEM205, ZNF788, ZNF833P, LYL1, MAN2B1, ASNA1, NFIX, ECSIT, WDR83OS, ZNF44, ACP5, BEST2, ZNF823, TRMT1, PRKCSH, ANGPTL8, RGL3, NA NA NA NA NA NA NA NA NA LTS-034 ZNF490, DOCK6, RAD23A, PLPPR2, PRDX2, ZNF878, ZNF20, ZNF69, ZNF136, CACNA1A, C19orf43, ZNF442, CALR, RTBDN, FBXW9, WDR83, ELOF1, STX10, GADD45GIP1, ZNF799, ZNF625, ZNF700, ZNF439, RAB3D, IER2) 0.23766684723441 22 0.100290487176909 1.33190478624583 4205 0.351998546100925 4 3 1 -6.85305903877858 LTS-034 NA NA NA NA LTS-034 chr19 13414595 13862655 448061 * c(CACNA1A, CCDC130) NA 0 NA 1.36328100669651 74 0.241930993677106 4 NA NA -5.76466259429477 LTS-034 chr19 13862656 13868669 6014 * CCDC130 0.434 1 NA 1.77196459923714 21 0.426368441162157 5 5 0 -5.76451530577617 LTS-034 chr19 13868670 17213224 3344555 * c(MIR1470, LOC100507373, DDX39A, AKAP8, KLF2, CHERP, GIPC1, ILVBL, CYP4F8, MISP3, PGLYRP2, CIB3, RLN3, CALR3, OR1I1, CCDC105, CYP4F22, LINC00661, OR10H4, LINC00905, ADGRL1, SIN3B, BRD4, CASP14, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, OR7C2, OR7A5, OR7C1, AKAP8L, CPAMD8, OR10H5, NWD1, LOC284454, C19orf53, ADGRE2, DNAJB1, NANOS3, PALM3, CLEC17A, CYP4F24P, OR7A10, CYP4F3, MIR181C, RAB8A, MYO9B, NDUFB7, NA NA NA NA NA NA NA NA NA LTS-034 NOTCH3, CC2D1A, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, CYP4F11, EPS15L1, WIZ, RFX1, C19orf67, RASAL3, SLC1A6, ZSWIM4, UCA1, CYP4F12, MIR639, TPM4, TMEM38A, SMIM7, C19orf57, EPHX3, PODNL1, SLC35E1, CCDC130, C19orf44, MRI1, ZNF333, ADGRE3, HSH2D, CYP4F2, SYDE1, AP1M1, F2RL3, SAMD1, DCAF15, HAUS8, MED26, IL27RA, TECR, ADGRE5) 0.412033056483429 122 0.0587153397832603 1.62629388373728 5152 0.388995454682822 5 3 2 -6.74151082330228 LTS-034 NA NA NA NA LTS-034 chr19 17213225 17430552 217328 * c(ANKLE1, NR2F6, BABAM1, MYO9B, USE1, MRPL34, DDA1, ABHD8, OCEL1, USHBP1) 0.376979730397152 28 0.0567975495968941 1.95792605456635 579 0.506290551208237 8 5 3 -6.77113422771041 LTS-034 chr19 17430553 17434282 3730 * c(ANO8, DDA1) NA 0 NA 0.952 1 NA NA NA NA NA LTS-034 chr19 17434283 18854987 1420705 * c(TMEM221, MIR3188, MIR3189, B3GNT3, IFI30, CCDC124, NXNL1, LRRC25, SSBP4, FAM129C, UNC13A, MAST3, FCHO1, CRTC1, FKBP8, TMEM59L, PGLS, LSM4, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, PDE4C, ISYNA1, PIK3R2, PGPEP1, C19orf60, MAP1S, KLHL26, ANO8, RAB3A, RPL18A, SLC5A5, BST2, LOC729966, UBA52, KXD1, COLGALT1, KIAA1683, ELL, PLVAP, GTPBP3, MPV17L2, CRLF1, MVB12A, GDF15) 0.415857038169439 80 0.0636264700409619 1.61641707186706 2829 0.375167012643303 5 3 2 -6.74948391151652 LTS-034 chr19 18854988 18856659 1672 * CRTC1 NA 0 NA 2.213 1 NA NA NA NA NA LTS-034 chr19 18856660 19016771 160112 * c(CERS1, COPE, COMP, CRTC1, GDF1, UPF1) 0.456876135285708 4 0.0827702643868356 2.25021999484696 367 0.529688948114166 8 4 4 -6.76800326791458 LTS-034 chr19 19016772 19016785 14 * COPE 0.46 1 NA 1.172 1 NA NA NA NA NA LTS-034 chr19 19016786 19345802 329017 * c(MEF2B, SUGP2, COPE, NR2C2AP, NCAN, SLC25A42, BORCS8-MEF2B, DDX49, TMEM161A, BORCS8, RFXANK, ARMC6, HOMER3) 0.451579111914519 15 0.0407901715519572 1.67354407336477 671 0.340146864635113 6 3 3 -6.83399910243379 LTS-034 chr19 19345803 19351596 5794 * NCAN NA 0 NA 1.86671074746104 14 0.543092654956898 6 NA NA -5.76442850899234 LTS-034 chr19 19351597 19379549 27953 * c(NCAN, HAPLN4, TM6SF2) 0.277 1 NA 1.41842367298831 75 0.291082569010894 4 4 0 -5.76484857672465 LTS-034 chr19 19379550 24115138 4735589 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, MAU2, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, RPSAP58, LINC00664, HAPLN4, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, TM6SF2, GATAD2A, ZNF253, ATP13A1, ZNF492, SUGP1, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, PBX4, ZNF93, TSSK6, NA NA NA NA NA NA NA NA NA LTS-034 ZNF486, ZNF682, LPAR2, ZNF101) 0.274801758318163 52 0.0566338295417776 1.32220532926189 2416 0.338009135486041 4 3 1 -6.75738426982145 LTS-034 NA NA NA NA LTS-034 chr19 24115139 24345121 229983 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 1.34901950385787 101 0.358286840947361 4 NA NA -5.76442047984395 LTS-034 chr19 28247625 30191933 1944309 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12) 0.403 1 NA 1.15339908588458 143 0.23447835021635 3 3 0 -5.91568731467309 LTS-034 chr19 30191934 30206457 14524 * C19orf12 0.42474894820097 4 0.0643188671127428 0.933833078600928 59 0.25606449180352 2 1 1 -6.7646340386398 LTS-034 chr19 30206458 30303510 97053 * c(C19orf12, CCNE1) NA 0 NA 1.748 1 NA NA NA NA NA LTS-034 chr19 30303511 36024504 5720994 * c(HPN-AS1, LINC01531, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GAPDHS, GPI, SCGB2B2, FFAR1, FFAR3, FFAR2, HPN, ZNF181, SBSN, RGS9BP, KRTDAP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, NA NA NA NA NA NA NA NA NA LTS-034 CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, DMKN, CD22, NA, KIAA0355, ZNF536) 0.447097250001593 84 0.0725243257506615 1.34617629916025 3566 0.366965491812574 4 2 2 -6.7426533798788 LTS-034 NA NA NA NA LTS-034 chr19 36024505 36027649 3145 * GAPDHS NA 0 NA 0.674 1 NA NA NA NA NA LTS-034 chr19 36027650 36038428 10779 * c(TMEM147-AS1, TMEM147, GAPDHS) NA 0 NA 0.724676634354684 77 0.175388977917217 2 NA NA -5.7650124774303 LTS-034 chr19 36038429 36041093 2665 * TMEM147 NA 0 NA 1.332 1 NA NA NA NA NA LTS-034 chr19 36041094 37488565 1447472 * c(LOC100134317, LINC00665, UPK1A-AS1, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF565, PROSER3, ZNF567, SYNE4, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, ZBTB32, WDR62, ZFP82, ZNF790-AS1, APLP1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, NA NA NA NA NA NA NA NA NA LTS-034 ZNF382, ZNF566, ALKBH6, ZNF461, KMT2B) 0.448557677750508 52 0.0443870395049963 1.35255899641737 3038 0.28105420743001 4 2 2 -6.7652635526332 LTS-034 NA NA NA NA LTS-034 chr19 37488566 37582011 93446 * c(ZNF420, ZNF568) NA 0 NA 1.22406224488774 16 0.554135121909209 4 NA NA -5.76624663247522 LTS-034 chr19 37582012 37620531 38520 * ZNF420 0.353 1 NA 1.05414332757801 53 0.182531950401214 3 3 0 -5.764424009896 LTS-034 chr19 37620532 39592138 1971607 * c(ZNF571-AS1, LOC100631378, SPINT2, MAP4K1, FBXO17, RASGRP4, ZNF573, RINL, FBXO27, ZNF420, FAM98C, CAPN12, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ECH1, ZNF585A, GGN, ZFP30, SIRT2, SIPA1L3, EIF3K, LOC284412, HKR1, HNRNPL, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, ZNF571, SARS2, PSMD8, CATSPERG, MRPS12, RYR1, C19orf33, CCER2, LOC644554, LGALS7B, ACTN4, DPF1, WDR87, ZNF527, ZNF607, YIF1B, ZNF585B, NA NA NA NA NA NA NA NA NA LTS-034 KCNK6, PPP1R14A) 0.336253060552345 48 0.0823798690163376 1.06398712764687 3421 0.392679312695636 3 2 1 -6.78417825210281 LTS-034 NA NA NA NA LTS-034 chr19 39592139 39760672 168534 * c(IFNL4, PAK4, IFNL2, IFNL3, NCCRP1, SYCN, ACP7) NA 0 NA 1.04760539226073 154 0.265193752530978 3 NA NA -5.76457456062595 LTS-034 chr19 39760673 39787106 26434 * c(IFNL2, IFNL1) NA 0 NA 0.778 1 NA NA NA NA NA LTS-034 chr19 39787107 39826597 39491 * c(IFNL1, LRFN1, GMFG) 0.432 1 NA 0.732042454699241 99 0.179640001669892 2 2 0 -5.76579389873531 LTS-034 chr19 39826598 40376880 550283 * c(LOC100129935, MIR4530, DLL3, CLC, EID2B, LGALS16, EID2, FBL, LGALS13, LEUTX, SELENOV, LGALS17A, PAF1, SAMD4B, MED29, LGALS14, RPS16, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.421281049446334 24 0.0584093345478173 0.773500630150226 1039 0.173066353153118 2 1 1 -6.78470298704937 LTS-034 chr19 40376881 40384094 7214 * FCGBP NA 0 NA 0.499 1 NA NA NA NA NA LTS-034 chr19 40384095 40406019 21925 * FCGBP 0.340458256266316 2 0.0424264068711929 0.351094129152733 40 0.209357611792322 3 2 1 -7.20740325432977 LTS-034 chr19 40406020 40406033 14 * FCGBP NA 0 NA 1.357 1 NA NA NA NA NA LTS-034 chr19 40406034 42909675 2503642 * c(ERICH4, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, ZNF526, C19orf47, LYPD4, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, ZNF780B, MEGF8, ERF, AKT2, CYP2G1P, CIC, PLD3, ZNF780A, C19orf54, PRR19, TMEM145, GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, ZNF546, B3GNT8, LIPE, MAP3K10, CEACAM6, ATP1A3, PAFAH1B3, NA NA NA NA NA NA NA NA NA LTS-034 RAB4B, POU2F2, ATP5SL, AXL, EXOSC5, PSMC4, PRX, SPTBN4, BCKDHA, RPS19, DMRTC2, TMEM91, BLVRB, ZNF574, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, CNFN, FCGBP, CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, CD79A) 0.428048144769762 83 0.0891253512744181 0.760929644323926 4870 0.221579395824088 2 1 1 -6.74154922212964 LTS-034 NA NA NA NA LTS-034 chr19 42909676 43009556 99881 * c(LIPE-AS1, CXCL17, LIPE) NA 0 NA 0.476338604377004 105 0.0973186394398195 1 NA NA -5.76548028248587 LTS-034 chr19 43009557 43011487 1931 * c(LIPE-AS1, CEACAM1) NA 0 NA 0.957 1 NA NA NA NA NA LTS-034 chr19 43011488 49714813 6703326 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR642B, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, ZNF234, CGB3, PPP1R13L, CD3EAP, RUVBL2, CEACAM8, KDELR1, CLASRP, KPTN, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, NTN5, NA NA NA NA NA NA NA NA NA LTS-034 IRGQ, ZNF428, CRX, PPM1N, KLC3, IGSF23, DACT3, SIX5, IGFL2, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, CADM4, EMP3, ERCC1, ERCC2, CARD8, ZC3H4, FBXO46, ETHE1, FOSB, SYNGR4, PRG1, CBLC, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, GIPR, ZNF285, LYPD3, BBC3, C5AR2, DHDH, GPR4, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, GRIN2D, ARHGAP35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNA7, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, BCAM, PSG8, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, HSD17B14, PLAUR, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, C19orf73, PNMAL1, TMEM143, PPP5C, SMG9, IRGC, CABP5, PSG1, PSG2, PSG3, PSG4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, MEIS3, CEACAM19, CD177, PTGIR, PNMAL2, PLEKHA4, MARK4, BAX, PVR, NECTIN2, BCAT2, RELB, BCL3, RPL18, RTN2, CEACAM1, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, TEX101, GRWD1, CCDC8, ZNF541, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, DHX34) 0.435826710788496 306 0.0726035007932831 0.76024974599515 10704 0.207528073849352 2 1 1 -6.73663044671495 LTS-034 NA NA NA NA LTS-034 chr19 49714814 49793391 78578 * c(SLC6A16, TRPM4) NA 0 NA 0.395 1 NA NA NA NA NA LTS-034 chr19 49793392 50016758 223367 * c(MIR4324, GFY, PTH2, ALDH16A1, CCDC155, FCGRT, FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, SLC6A16, MIR150, PIH1D1, SLC17A7, RPS11, SNORD35B, TEAD2, CD37) 0.222420170797677 3 0.0612862137841782 0.455828133271905 650 0.1107809764294 1 1 0 -6.93733674654582 LTS-034 chr19 50016759 50017106 348 * FCGRT NA 0 NA 0.848 1 NA NA NA NA NA LTS-034 chr19 50017107 50762418 745312 * c(SNAR-B2, SNAR-D, PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, PNKP, SIGLEC11, IZUMO2, CPT1C, AP2A1, ADM5, FCGRT, ATF5, NUP62, ZNF473, IL4I1, PRMT1, IRF3, SIGLEC16, LOC400710, NOSIP, VRK3, PTOV1, PRRG2, RCN3, PRR12, SCAF1, TSKS, RRAS, TBC1D17, MYH14, FUZ, MED25, BCL2L12, AKT1S1) 0.448371311160597 55 0.0567868185492264 0.758263068690302 1885 0.187358766888863 2 1 1 -6.75292053241271 LTS-034 chr19 50762419 50763886 1468 * MYH14 0.44 1 NA 0.864065091306913 5 0.510081170011205 2 2 0 -5.76446081104779 LTS-034 chr19 50763887 53770911 3007025 * c(SIGLEC14, SNAR-F, LOC100129083, ERVV-2, ZNF816-ZNF321P, KLK11, KLK8, FAM71E1, CLDND2, ZNF816, JOSD2, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, ETFB, FPR1, FPR2, FPR3, NAPSB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, GPR32, HAS1, VN1R2, VN1R4, C19orf81, ZNF677, KLK3, KCNC3, KLK1, KLK2, ZNF808, NA NA NA NA NA NA NA NA NA LTS-034 ZNF818P, LIM2, ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, PPP2R1A, ASPDH, KLK15, ZNF701, ZNF83, ZNF415, KLK7, KLK6, KLK10, ZNF350, KLKP1, CLEC11A, ZNF649, SPIB, SNORD88A, SNORD88B, SNORD88C, MIR643, CEACAM18, LINC01530, NR1H2, ZNF28, ZNF137P, ZNF175, MYH14, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, SYT3, ZNF528, ZNF347, ZNF577, C19orf48, SIGLEC5, SIGLEC10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SIGLEC12, ZNF616, ZNF766, ZNF468, ZNF160, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4, ZNF432) 0.426295466142871 108 0.112928555680693 0.759336305704271 4750 0.224372734774836 2 1 1 -6.74139942142338 LTS-034 NA NA NA NA LTS-034 chr19 53770912 53793075 22164 * c(BIRC8, VN1R4, FAM90A27P) NA 0 NA 1.16259057482555 40 0.526790144564471 3 NA NA -5.76482857325784 LTS-034 chr19 53793076 55328899 1535824 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR4752, MIR371B, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, BIRC8, LENG8, KIR3DL3, OSCAR, ZNF813, TMC4, TPM3P9, CDC42EP5, ZNF525, LILRA4, PRPF31, LOC284379, VSTM1, TFPT, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, ZNF761, LAIR1, LAIR2, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, TTYH1, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, NA NA NA NA NA NA NA NA NA LTS-034 MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRP2, LILRA6, KIR3DX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF765, NLRP12, MYADM, ZNF845, LENG9) 0.421387924495891 81 0.0889365011374289 0.735605156711828 3241 0.239425743086081 2 1 1 -6.77831094540895 LTS-034 NA NA NA NA LTS-034 chr19 55328900 55328917 18 * c(KIR2DS4, KIR3DL1) 0.465 1 NA 1.278 1 NA NA NA NA NA LTS-034 chr19 55328918 55351171 22254 * c(KIR2DS4, KIR3DL1) 0.382292458214228 4 0.231783663502557 1.21245548400286 55 0.724337998934432 3 2 1 -6.73886110525337 LTS-034 chr19 55351172 55358615 7444 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.254 1 NA NA NA NA NA LTS-034 chr19 55358616 55815975 457360 * c(RNU6-64P, RDH13, NLRP7, FCAR, PPP6R1, HSPBP1, TMEM86B, DNAAF3, KIR2DS4, KIR3DL1, KIR3DL2, GP6, PPP1R12C, EPS8L1, NLRP2, PTPRH, SYT5, TNNI3, TNNT1, BRSK1, NCR1) 0.440563956044842 50 0.0463095573509488 0.790125261846259 1220 0.255718822360975 2 1 1 -6.73908605105511 LTS-034 chr19 55815976 55918953 102978 * c(COX6B2, TMEM190, UBE2S, TMEM150B, FAM71E2, IL11, TMEM238, RPL28, BRSK1, KMT5C) 0.376058956889039 17 0.0581023437818233 1.07497825683195 430 0.228483581051143 3 2 1 -6.77675288890893 LTS-034 chr19 55918954 55942883 23930 * c(UBE2S, SHISA7) NA 0 NA 0.822 1 NA NA NA NA NA LTS-034 chr19 55942884 59074653 3131770 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, U2AF2, ZIM3, ZNF837, ZNF543, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, ZIM2, ZNF549, ZNF324, CHMP2A, ZNF544, NA NA NA NA NA NA NA NA NA LTS-034 SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, ZNF773, ZNF582-AS1, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, ZNF581, PEG3, ZNF586, ZNF444, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, ZNF71, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264) 0.426070688911591 171 0.0813261247207286 0.824383109166479 5726 0.422769490613424 2 1 1 -6.80558858541599 LTS-034 NA NA NA NA LTS-034 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.791270354886215 35 0.117947766533547 2 NA NA -5.7648866907919 LTS-034 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.472 1 NA 1.29309637459815 39 0.240024866570528 4 4 0 -5.76591216598649 LTS-034 chr20 138126 3678025 3539900 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, NOP56, RBCK1, SLC52A3, TMC2, TBC1D20, SIRPD, C20orf141, C20orf96, SRXN1, DEFB127, DEFB129, SIRPA, STK35, CSNK2A1, FKBP1A, UBOX5, DEFB128, C20orf194, SDCBP2, GNRH2, SIRPB2, IDH3B, RSPO4, TGM6, ITPA, DEFB132, C20orf202, OXT, ANGPT4, PDYN, AVP, TMEM74B, SIRPG, NSFL1C, CPXM1, EBF4, TRIB3, PTPRA, FASTKD5, GFRA4, RAD21L1, NA NA NA NA NA NA NA NA NA LTS-034 VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SOX12, SNORA51, SNORD110, TCF15, TGM3, ZNF343, NRSN2, ADAM33, FAM110A, SLC4A11, ATRN, ZCCHC3, SCRT2, PSMF1, SNPH, LZTS3) 0.457974060771038 128 0.0387023646757671 1.33761783051888 4636 0.282136032807435 4 2 2 -6.88865189898988 LTS-034 NA NA NA NA LTS-034 chr20 3678026 3678455 430 * SIGLEC1 NA 0 NA 1.822 1 NA NA NA NA NA LTS-034 chr20 3678456 3944745 266290 * c(MIR103B2, CENPB, RNF24, HSPA12B, SPEF1, MIR103A2, C20orf27, AP5S1, MAVS, SIGLEC1, PANK2, CDC25B) 0.393000973508964 14 0.107554535106512 1.63452644773576 733 0.354762466021497 5 3 2 -6.74191475042562 LTS-034 chr20 3944746 3954881 10136 * RNF24 NA 0 NA 1.249 1 NA NA NA NA NA LTS-034 chr20 3954882 8131017 4176136 * c(PCNA-AS1, LINC00658, CHGB, RNF24, PROKR2, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, TMEM230, PCNA, TRMT6, HAO1, SMOX, CRLS1, FERMT1, PRNP, TMX4, GPCPD1, LOC643406, BMP2, LINC01433, MCM8, CDS2, RASSF2, SLC23A2) 0.456041392229252 64 0.0345794425522191 1.34112553969131 2080 0.544799774213943 4 2 2 -6.88860950613333 LTS-034 chr20 8131018 17600357 9469340 * c(SNAP25-AS1, MACROD2-AS1, ISM1-AS1, DSTN, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, LOC339593, PCSK2, ESF1, PLCB4, SPTLC3, KIF16B, TASP1, OTOR, PAK5, RRBP1, BFSP1, ANKEF1, SNAP25, SNRPB2, NDUFAF5, SEL1L2, MKKS) 0.455495172363294 52 0.0388665340114519 1.41793016047913 2674 0.366969717804712 4 2 2 -6.93968610882839 LTS-034 chr20 17600358 17932345 331988 * c(BANF2, SNX5, RRBP1) NA 0 NA 1.45091674528792 173 0.310393818489987 4 NA NA -5.77444187063454 LTS-034 chr20 17932346 17933250 905 * SNX5 NA 0 NA 1.848 1 NA NA NA NA NA LTS-034 chr20 17933251 18005113 71863 * c(SNX5, OVOL2, SNORD17, MGME1) 0.3 1 NA 1.82285788523314 85 0.323379263248526 6 6 0 -5.76605964660426 LTS-034 chr20 18005114 25752672 7747559 * c(C20orf78, LOC100130264, LINC01432, LOC100270804, PET117, MIR3192, CST8, SEC23B, POLR3F, RBBP9, CSTL1, CST9L, CST9, LINC00261, NANP, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, NINL, CFAP61, ABHD12, ZNF337, LOC284788, LOC284798, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, LINC00851, NKX2-2, PAX1, NAA20, CRNKL1, RIN2, DZANK1, KIZ, APMAP, RALGAPA2, KAT14, NA NA NA NA NA NA NA NA NA LTS-034 SLC24A3, PYGB, OVOL2, NAPB, GZF1, NKX2-4, SSTR4, THBD, FAM182B, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, DTD1, ENTPD6, GINS1) 0.333992801956327 66 0.0520923176400278 1.93655704471062 4088 0.498740279037372 6 4 2 -6.77652243133411 LTS-034 NA NA NA NA LTS-034 chr20 25752673 25753720 1048 * FAM182B NA 0 NA 0.734 1 NA NA NA NA NA LTS-034 chr20 25753721 26188981 435261 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.328267714218937 16 0.0794115860564439 1.29471299673259 78 0.459432702824808 3 2 1 -6.8791069613504 LTS-034 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.908534064558767 5 0.311001286170974 3 NA NA -5.76441566172671 LTS-034 chr20 29625845 29625876 32 * FRG1BP 0.285 1 NA 1.667 1 NA NA NA NA NA LTS-034 chr20 29625877 29652219 26343 * c(MLLT10P1, FRG1BP) 0.321091460818923 16 0.104644716381988 1.22530615207132 48 0.455032474388616 7 5 2 -6.77935414837099 LTS-034 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 3.57 1 NA NA NA NA NA LTS-034 chr20 29845417 30753270 907854 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, CCM2L, LINC00028, TTLL9, TPX2, FOXS1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, HCK, ID1, XKR7, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, TM9SF4) 0.319076795489945 24 0.035400580319488 2.75430743835252 1130 0.649796452642417 10 7 3 -6.78241799677223 LTS-034 chr20 30753271 30777800 24530 * c(TSPY26P, TM9SF4) 0.393 1 NA 2.85501813346552 55 0.491622309247145 9 9 0 -5.76441697257986 LTS-034 chr20 30777801 31238857 461057 * c(TSPY26P, NOL4L, LOC149950, ASXL1, POFUT1, C20orf203, PLAGL2, KIF3B) 0.382257312161494 17 0.0383260969299295 2.74027743712548 830 0.668737452544068 8 5 3 -6.73696277602834 LTS-034 chr20 31238858 31276756 37899 * C20orf203 NA 0 NA 1.652 1 NA NA NA NA NA LTS-034 chr20 31276757 31763254 486498 * c(BPIFB6, BPIFA2, SUN5, COMMD7, BPIFB4, DNMT3B, MAPRE1, BPIFB3, BPIFB2) 0.461549338565258 30 0.0308232819901398 1.9136997589511 872 0.381810304582756 6 3 3 -7.05828021654656 LTS-034 chr20 31763255 32267724 504470 * c(BPIFA3, C20orf144, BPIFA2, ACTL10, E2F1, BPIFA4P, BPIFA1, CDK5RAP1, NECAB3, SNTA1, CBFA2T2, BPIFB1) 0.413413178933964 9 0.0661698152063646 2.26410053777123 667 0.455584697037549 7 4 3 -6.74666775857169 LTS-034 chr20 32267725 34091673 1823949 * c(MIR499B, MIR4755, MMP24-AS1, PROCR, MMP24, CEP250, PXMP4, CHMP4B, PIGU, HMGB3P1, FAM83C, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, EIF6, ASIP, UQCC1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, MIR644A, GDF5, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2) 0.446253989799042 15 0.0461237465954361 1.97675675476184 2399 0.503363704997979 6 3 3 -6.75244554149202 LTS-034 chr20 34091674 35125388 1033715 * c(RBM12, CEP250, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, AAR2, PHF20, SCAND1, ERGIC3, NORAD, SPAG4, CPNE1, NFS1, RBM39) 0.363509191699179 4 0.0208965706915433 2.45271338192549 1464 0.473852274258961 11 7 4 -7.07288606536025 LTS-034 chr20 35125389 36845738 1720350 * c(LOC100287792, TGIF2-C20orf24, LINC00489, MYL9, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, DLGAP4, SAMHD1, GHRH, NNAT, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, SRC, TGM2, DSN1, SLA2, KIAA1755, TTI1) 0.461667698882969 35 0.0275671830231515 1.93836624238654 2123 0.700617218156992 6 3 3 -7.13772476988631 LTS-034 chr20 36845739 36917624 71886 * KIAA1755 NA 0 NA 2.08896829647869 97 0.365093758553011 7 NA NA -5.76591149196865 LTS-034 chr20 36917625 36919671 2047 * character(0) NA 0 NA 1.355 1 NA NA NA NA NA LTS-034 chr20 36919672 36922127 2456 * character(0) 0.284 1 NA 1.49309377849799 47 0.224790281541041 4 4 0 -5.76469220206788 LTS-034 chr20 36922128 36993452 71325 * c(LBP, BPI) NA 0 NA 1.55011361608795 127 0.318673453991253 5 NA NA -5.76597586847374 LTS-034 chr20 36993453 36995346 1894 * LBP NA 0 NA 1.345 1 NA NA NA NA NA LTS-034 chr20 36995347 39808660 2813314 * c(SNHG11, SLC32A1, ADIG, ZHX3, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, PLCG1, RALGAPB, DHX35, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, MAFB) 0.275510026833933 18 0.0405973774870192 1.30157365446384 1334 0.283850678984521 4 3 1 -6.78223373037233 LTS-034 chr20 39808661 39810767 2107 * ZHX3 NA 0 NA 1.23691739562918 43 0.164660195756124 4 NA NA -5.7647864209735 LTS-034 chr20 39810768 39810774 7 * ZHX3 NA 0 NA 1.619 1 NA NA NA NA NA LTS-034 chr20 39810775 39812687 1913 * ZHX3 0.485 1 NA 1.84778902633998 41 0.526148113942147 6 6 0 -5.76442036048086 LTS-034 chr20 39812688 40081641 268954 * c(ZHX3, LPIN3, CHD6, EMILIN3) 0.460197965870231 16 0.0373799745853311 1.87905008700569 481 0.369511676912336 6 3 3 -6.93447848297821 LTS-034 chr20 40081642 40083258 1617 * CHD6 NA 0 NA 2.455 1 NA NA NA NA NA LTS-034 chr20 40083259 40828096 744838 * c(PTPRT, CHD6) 0.397808768544864 3 0.0276465790529919 2.57739597621003 394 0.691875219443722 10 6 4 -6.77937846296522 LTS-034 chr20 40828097 40863220 35124 * PTPRT NA 0 NA 1.874 1 NA NA NA NA NA LTS-034 chr20 40863221 42966025 2102805 * c(OSER1-AS1, SGK2, PTPRT, FITM2, R3HDML, GTSF1L, L3MBTL1, MYBL2, IFT52, OSER1, JPH2, SRSF6, GDAP1L1, TOX2) 0.463248867593164 21 0.0275824305707542 1.87512020640557 999 0.411375027475983 6 3 3 -7.19873581000472 LTS-034 chr20 42966026 43043286 77261 * c(MIR3646, R3HDML, HNF4A) NA 0 NA 2.01520049873558 83 0.473451122424177 6 NA NA -5.76469405867745 LTS-034 chr20 43043287 43046946 3660 * HNF4A NA 0 NA 1.321 1 NA NA NA NA NA LTS-034 chr20 43046947 43118606 71660 * c(HNF4A, TTPAL) 0.288 1 NA 1.35510425715568 136 0.286004309179566 4 4 0 -5.76441116208436 LTS-034 chr20 43118607 60733810 17615204 * c(ADA, ACOT8, SNORD12B, MIR298, ZNF663P, LOC100131496, CDH4, MIR1257, MIR4325, MIR3194, MTRNR2L3, MIR3616, STK4-AS1, LOC100506384, EPPIN-WFDC6, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, TRERNA1, SYCP2, WFDC2, CEBPB, ARFGEF2, SPINT3, TOMM34, SERINC3, UBE2C, PKIG, TP53RK, RBPJL, DNTTIP1, FAM210B, PHACTR3, WFDC12, SPATA25, OCSTAMP, TSHZ2, C20orf85, ZNF831, WFDC3, GCNT7, CBLN4, CTCFL, RIMS4, NEURL2, NA NA NA NA NA NA NA NA NA LTS-034 ZSWIM3, WFDC10A, WFDC6, FAM65C, CSE1L, CSTF1, WFDC5, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, WFDC13, APCDD1L, EDN3, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, WFDC11, WFDC9, SS18L1, SNORD12C, TP53TG5, MOCS3, GNAS, WFDC10B, LINC00494, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, KCNS1, TMEM189, TMEM189-UBE2V1, FAM209B, SPINT4, SUMO1P1, MIR296, MC3R, MMP9, ZFAS1, NFATC2, SLC35C2, PRELID3B, PCK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ATP5E, NELFCD, RTFDC1, PIGT, PFDN4, PI3, PLTP, CTSA, PPP1R3D, PPP4R1L, RBM38, BCAS4, DDX27, ZNF334, ZFP64, DOK5, DBNDD2, RNF114, SULF2, PSMA7, PMEPA1, CASS4, EPPIN, SALL4, ZNFX1, PTGIS, RAB22A, SLC12A5, PREX1, PTPN1, NCOA5, CDH26, KCNK15, SDC4, ELMO2, ZNF335, PCIF1, FAM217B, SEMG1, SEMG2, CDH22, SLC13A3, BMP7, SLPI, SNAI1, STAU1, STK4, AURKA, TAF4, SNORD12, MIR645, TFAP2C, TNNC2, UBE2V1, YWHAB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SYS1-DBNDD2, MKRN7P, ZNF217, LINC01260, TTPAL, NPEPL1, PABPC1L, TUBB1, ZBP1, SLC2A10, NCOA3, PARD6B, RAE1, BCAS1, STX16, MATN4, DPM1, WISP2, SYS1, WFDC8, SNX21, ZSWIM1, VAPB, B4GALT5, CD40, SPATA2) 0.279111092804736 206 0.0536664768843573 1.32108016175535 12553 0.317100388935872 4 3 1 -6.79549210619897 LTS-034 NA NA NA NA LTS-034 chr20 60733811 61048697 314887 * c(MIR4758, ADRM1, HRH3, GATA5, RBBP8NL, SS18L1, MTG2, LAMA5, RPS21, CABLES2, OSBPL2) 0.229583654529624 10 0.0271874153893958 1.65364549987378 1048 0.340717447401103 5 4 1 -6.73795108742263 LTS-034 chr20 61048698 61050093 1396 * GATA5 NA 0 NA 1.343 1 NA NA NA NA NA LTS-034 chr20 61050094 62872290 1822197 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR1914, MIR4326, MIR3196, RTEL1-TNFRSF6B, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, OGFR, DIDO1, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, GMEB2, SLCO4A1, NPBWR2, LINC00176, KCNQ2, MIR1-1, MIR124-3, MIR133A2, MYT1, NTSR1, OPRL1, STMN3, RTEL1, SOX18, NA NA NA NA NA NA NA NA NA LTS-034 YTHDF1, LIME1, UCKL1, GID8, MRGBP, ARFGAP1, SLC2A4RG, ZNF512B, PTK6, COL20A1, SLC17A9, LOC63930, SRMS, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.284089641546307 107 0.045313603855908 1.31320579214486 4066 0.324531645671951 4 3 1 -6.74311597093035 LTS-034 NA NA NA NA LTS-034 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.34443648380602 119 0.389054425449851 4 NA NA -5.76442473282289 LTS-034 chr21 9825764 9825966 203 * MIR3648-1 0.213 1 NA 0.945828442123117 3 0.702719242182348 3 3 0 -5.7644132628034 LTS-034 chr21 9825967 11059877 1233911 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.328060074578315 35 0.0875389277153097 1.00021392734993 177 0.766950297892632 3 2 1 -6.81773850426023 LTS-034 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.20614472927486 5 0.160837806500835 4 NA NA -5.77632618633623 LTS-034 chr21 14745307 14756794 11488 * character(0) 0.484 1 NA 1.18267346821435 9 0.793125462962828 3 3 0 -5.76454409959606 LTS-034 chr21 14756795 15988325 1231531 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.438002747569668 20 0.0493307579934723 1.08275438637551 423 0.326598997020412 4 2 2 -7.05907220330992 LTS-034 chr21 15988326 15991856 3531 * LOC388813 NA 0 NA 1.847 1 NA NA NA NA NA LTS-034 chr21 15991857 22912020 6920164 * c(LINC01549, RNU6-67P, BTG3, CHODL, CXADR, C21orf91-OT1, USP25, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, NCAM2, CHODL-AS1, C21orf91, TMPRSS15, NRIP1) 0.441014768821269 25 0.0944984479590362 1.22521726706214 1045 0.347035217511505 4 2 2 -7.05596159980883 LTS-034 chr21 22912021 26958037 4046017 * c(MIR155HG, D21S2088E, LINC00515, LOC339622, LINC00317, MIR155, NCAM2, LINC00158, LINC00308, MRPL39) NA 0 NA 1.24371327223795 88 0.428160215108157 4 NA NA -5.857241845302 LTS-034 chr21 26958038 27839251 881214 * c(CYYR1, GABPA, APP, ATP5J, MRPL39, JAM2) 0.301 1 NA 0.912311042650754 489 0.21972923111076 3 3 0 -5.99811014088233 LTS-034 chr21 27839252 44195416 16356165 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, BRWD1-AS1, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, USP16, CCT8, ADAMTS5, LINC00310, B3GALT5-AS1, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, LCA5L, IGSF5, LINC00479, UMODL1-AS1, DSCAM, RCAN1, DYRK1A, PLAC4, NA NA NA NA NA NA NA NA NA LTS-034 LINC00189, ERG, ETS2, MORC3, CLDN14, LINC00314, KRTAP15-1, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, LINC00307, KRTAP13-4, LINC00323, GRIK1, N6AMT1, DONSON, HUNK, HLCS, HMGN1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, KRTAP26-1, LINC00114, MX1, MX2, ZBTB21, PCP4, PIGP, PDE9A, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, MAP3K7CL, BACH1, SCAF4, EVA1C, PRDM15, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SOD1, SON, SNORA80A, TFF1, TFF2, TFF3, TIAM1, TMPRSS2, TTC3, KRTAP19-8, LINC01548, WRB, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, PSMG1, CBR1, CBR3, SYNJ1, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.275624726882627 227 0.0514280455173656 0.913587467179565 11363 0.570587587869692 3 2 1 -8.62793603177639 LTS-034 NA NA NA NA LTS-034 chr21 44195417 44592761 397345 * c(WDR4, CRYAA, NDUFV3, PDE9A, PKNOX1, U2AF1, CBS) 0.232747325783321 29 0.0478417959364366 1.17990546469283 519 0.292779047461673 5 4 1 -7.02816650902539 LTS-034 chr21 44592762 47970581 3377820 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, HSF2BP, LINC00313, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, CRYAA, CSTB, SIK1, RRP1B, DIP2A, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, NA NA NA NA NA NA NA NA NA LTS-034 LSS, PCNT, PFKL, PCBP3, C21orf58, YBEY, TSPEAR, AGPAT3, PWP2, LOC642852, SLC19A1, SUMO3, TRAPPC10, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, PDXK, RRP1, MCM3AP) 0.281060564753648 203 0.061923281614679 0.91135875738646 5189 0.236298017035604 3 2 1 -8.30661501761726 LTS-034 NA NA NA NA LTS-034 chr21 47970582 48084993 114412 * c(DIP2A, PRMT2, S100B) NA 0 NA 0.869849973817593 247 0.232500202570633 2 NA NA -5.78548965935357 LTS-034 chr22 16157787 16157883 97 * character(0) 0.48 1 NA 0.726 1 NA NA NA NA NA LTS-034 chr22 16157884 21576277 5418394 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, COMT, CRKL, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, SERPIND1, TPTEP1, CCDC188, LRRC74B, BCRP2, MIR185, NA NA NA NA NA NA NA NA NA LTS-034 ARVCF, THAP7-AS1, P2RX6P, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC7A4, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UFD1L, ZNF74, C22orf29, THAP7, OR11H1, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, RIMBP3, SCARF2, P2RX6, SNAP29, DGCR2) 0.224103877284431 13 0.124838459721518 0.773830974359314 5823 0.187076198947973 2 2 0 -7.17288350095996 LTS-034 NA NA NA NA LTS-034 chr22 21576278 22065036 488759 * c(MIR301B, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L8P, YPEL1, PI4KAP2, MIR130B, TMEM191C, UBE2L3) NA 0 NA 1.04103701167051 561 0.28160380641582 3 NA NA -5.7654766018817 LTS-034 chr22 22065037 22065098 62 * YPEL1 NA 0 NA 0.808 1 NA NA NA NA NA LTS-034 chr22 22065099 24340955 2275857 * c(DDTL, IGLL5, ZNF280A, ZNF280B, ZDHHC8P1, C22orf15, DDT, PRAME, GSTTP1, POM121L1P, FBXW4P1, RGL4, RSPH14, GNAZ, MIF-AS1, YPEL1, VPREB3, IGLL1, CHCHD10, MIF, MMP11, DRICH1, MAPK1, BCR, LL22NC03-63E9.3, CES5AP1, SMARCB1, SLC2A11, MIR650, VPREB1, ZNF70, TOP3B, GGTLC2, GUSBP11, DERL3, RAB36, PPM1F, BMS1P20) 0.261929680750858 22 0.118779626060615 0.753422470770041 2265 0.380896586564479 2 2 0 -7.53577052875916 LTS-034 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.389 1 NA NA NA NA NA LTS-034 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.49183435816774 57 0.261748470682757 4 NA NA -5.76790445842607 LTS-034 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.747 1 NA NA NA NA NA LTS-034 chr22 24400149 36663563 12263415 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, SEC14L2, NA NA NA NA NA NA NA NA NA LTS-034 RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, PISD, OSBP2, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MB, MCM5, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 BCRP3, ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TIMP3, TOP1P2, SEC14L6, XBP1, YWHAH, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, APOL1, THOC5, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.157592169904036 25 0.130307034857422 0.756746741984469 10780 0.194715666705065 2 2 0 -6.81661107511659 LTS-034 NA NA NA NA LTS-034 chr22 36663564 36677345 13782 * c(MYH9, APOL1) NA 0 NA 1.155 1 NA NA NA NA NA LTS-034 chr22 36677346 36983635 306290 * c(CACNG2, TXN2, MYH9, FOXRED2, EIF3D) NA 0 NA 1.03241278666211 465 0.235163714737113 3 NA NA -5.76653684580901 LTS-034 chr22 36983636 37098431 114796 * CACNG2 NA 0 NA 0.705 1 NA NA NA NA NA LTS-034 chr22 37098432 51117811 14019380 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, CPT1B, APOBEC3D, CSF2RB, CSNK1E, NA NA NA NA NA NA NA NA NA LTS-034 ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, GCAT, CBX6, NPTXR, CBX7, SLC16A8, MAPK8IP2, SH3BP1, PLXNB2, MAFF, BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, CBY1, SUN2, TTLL1, SAMM50, ATXN10, FAM19A5, TMEM184B, SULT4A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 GGA1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, CARD10, PARVB, NCAPH2, H1F0, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, CHKB-CPT1B, OGFRP1, LINC00207, LGALS1, LGALS2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, MFNG, MGAT3, MPST, SHISA8, ODF3B, NAGA, ATF4, NCF4, NDUFA6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SNU13, ACO2, EIF3L, GTSE1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SOX10, SREBF2, SSTR3, ST13, TCF20, TEF, TSPO, MIR658, MIR659, TST, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, ALG12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, PLA2G6, LDOC1L, POLDIP3, C22orf23, GALR3, PHF5A, KIAA1644, SHANK3, MICALL1, TUBGCP6, CACNA1I, NA, LMF2, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, CELSR1, PPP6R2, ZBED4, JOSD1, RBX1, SCO2) 0.116061030925967 55 0.0678762391296383 0.755403354968786 17706 0.197549287614026 2 2 0 -6.76406894050187 LTS-034 NA NA NA NA LTS-034 chr22 51117812 51220846 103035 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.704542437383724 231 0.173322290147571 2 NA NA -5.77811749503547 LTS-034 chrX 2699993 2733109 33117 * XG 0.132 1 NA 0.461722283393278 43 0.334793060164033 1 1 0 -5.76446859159059 LTS-034 chrX 2733110 11785440 9052331 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.170481622796592 21 0.0984768524892549 0.490606966164816 2628 0.180733571147944 1 1 0 -7.03639796536233 LTS-034 chrX 11785441 13790718 2005278 * c(GS1-600G8.3, LINC01203, MSL3, TCEANC, FAM9C, EGFL6, GPM6B, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.121951753888272 6 0.104348294986869 0.439732661447538 1103 0.161441387601391 1 1 0 -7.15781148019154 LTS-034 chrX 13790719 13790776 58 * GPM6B NA 0 NA 0.465 1 NA NA NA NA NA LTS-034 chrX 13790777 55185656 41394880 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, SUPT20HL1, PHKA2-AS1, GAGE12D, LOC100132831, UXT-AS1, SCARNA9L, MIR500B, MIR23C, PIR-FIGF, MIR4769, MIR4768, HUWE1, PQBP1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SSX3, TIMM17B, SCML2, PRDX4, EBP, RAI2, MAGED2, PIM2, IL1RAPL1, WDR45, PRAF2, CA5B, CLCN5, BEND2, DGKK, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, USP27X-AS1, NA NA NA NA NA NA NA NA NA LTS-034 FAM47A, MOSPD2, RIBC1, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, XAGE3, XAGE5, NUDT10, DMD, NR0B1, EIF1AX, EIF2S3, ELK1, PAGE2, ALAS2, FANCB, FGD1, VEGFD, CNKSR2, IQSEC2, PHF8, ACOT9, SMPX, GSPT2, FTSJ1, CXorf58, GAGE1, CXorf23, MAP7D2, KLHL34, TAB3, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GK, GPR82, GPKOW, APEX2, PCSK1N, GLRA2, SSX6, SSX7, SSX8, SSX9, GPM6B, GPR34, LINC01281, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CFAP47, MAGEB18, CCDC22, GRPR, SH3KBP1, HSD17B10, ERAS, CA5BP1, ZNF81, ITIH6, LANCL3, MPC1L, DCAF8L2, MAGEB5, ARAF, KCND1, MAP3K15, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, YY2, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, SPANXN5, TBC1D25, OTC, FOXP3, CDK16, MBTPS2, PDHA1, PDK3, CFP, PFKFB1, PHEX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PHKA2, PIGA, PLP2, FTHL17, POLA1, GPR173, NDUFB11, GNL3L, PPEF1, BCOR, FAM120C, GEMIN8, NUDT11, OTUD5, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, GRIPAP1, ZNF630, TMEM27, MIR362, MIR500A, MIR501, MIR502, SHROOM4, MID1IP1, ACE2, RBBP7, RBM3, NYX, RP2, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, NA, MAGEB17, WDR13, PORCN, WNK3, XAGE1B, BMX, SMS, SSX1, SSX5, SCARNA23, SNORA11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CDKL5, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, TSPAN7, TRO, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, LOC729609, UBA1, SLC35A2, KDM6A, WAS, XK, ZFX, ZNF182, ZNF41, ZNF157, CACNA1F, APOO, S100G, CXorf36, MAGIX, CXorf21, EFHC2, KLHL15, PPP1R2P9, MAGED4B, ZRSR2, USP11, USP9X, RBM10, KDM5C, SMC1A, TMEM47, SRPX, UXT, SLC9A7, CCNB3, PIR, INE2, INE1, CASK, PAGE1, AKAP4, AP1S2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 PPP1R3F, CCDC120, TSR2, FAM104B, RGN, REPS2, BMP15, SLC38A5, MED14, SYAP1, SYTL5, PCYT1B, MAGED1, PAGE4, JADE3) 0.235364730681399 62 0.103418840820714 0.487591171493459 20626 0.137763173719312 1 1 0 -8.22705412620014 LTS-034 NA NA NA NA LTS-034 chrX 55185657 57937169 2751513 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) NA 0 NA 0.466871854597403 807 0.119434461686592 1 NA NA -5.77018660223721 LTS-034 chrX 61999880 62856927 857048 * c(SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.498156126777861 143 0.242320010302263 1 1 0 -5.79351610504944 LTS-034 chrX 62856928 107627160 44770233 * c(MIR374B, ARMCX4, UBE2DNL, LINC00630, MIR1468, FTX, MIR4328, MIR374C, MIR676, ARMCX5-GPRASP2, RPL36A-HNRNPH2, CDX4, CYSLTR1, TMSB15A, MID2, CHM, VSIG4, GPRASP2, ATG4A, DACH2, COL4A6, COX7B, MAP2K4P1, PIH1D3, MUM1L1, FAM199X, AMER1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, RAB40A, ASB12, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, H2BFWT, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, TSC22D3, NA NA NA NA NA NA NA NA NA LTS-034 EDA, EFNB1, ZCCHC5, NRK, TMEM31, ABCB7, ARHGEF9, KIF4A, CENPI, BRWD3, IL1RAPL2, ITGB1BP2, BEX3, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, RAB40AL, CXCR3, LPAR4, H2BFM, LOC286437, YIPF6, TTC3P1, FAM133A, TMSB15B, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 SLC25A53, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, GLRA4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, TCEAL9, RAB9B, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, PLP1, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, NUP62CL, GDPD2, TBC1D8B, CXorf57, RBM41, JPX, MTMR8, BEX1, HDAC8, ZC4H2, NXF5, NXF4, NXF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 KLHL4, TEX13B, TEX13A, TEX11, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, ZCCHC18, SH3BGRL, PABPC1L2B, NAP1L6, ARMCX5, FAM226B, SLC16A2, MIR545, TAF1, SERPINA7, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, RNF128, MORC4, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, LAS1L, FRMD8P1, MAGT1, ZMAT1, GPR174, BEX2, OGT, SLC7A3, TCEAL3, FGF16, TGIF2LX, CLDN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 TCEAL8, ZMYM3, RIPPLY1, TCEAL1, TSIX, ACRC, SYTL4, ITM2A, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, MED12) 0.136895896736485 45 0.113930800369028 0.482541345573031 16721 0.168518164133888 1 1 0 -7.42431823935038 LTS-034 NA NA NA NA LTS-034 chrX 107627161 107681050 53890 * COL4A6 NA 0 NA 0.143 1 NA NA NA NA NA LTS-034 chrX 107681051 107940623 259573 * c(COL4A5, COL4A6) 0.477 1 NA 0.178898341119522 303 0.0873662280384944 0 0 0 -5.77046689183055 LTS-034 chrX 107940624 154467737 46527114 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR718, MIR764, MIR2114, TRPC5OS, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MIR4329, MAMLD1, LINC00629, MAGEA10-MAGEA5, MIR3978, HS6ST2-AS1, BCAP31, NA NA NA NA NA NA NA NA NA LTS-034 MAGEA8-AS1, TENM1, CDR1, SLC9A6, ENOX2, CETN2, STAG2, PLAC1, UTP14A, ZNF275, PGRMC1, TREX2, SLC6A14, PNMA5, CNGA2, COL4A5, SLITRK4, SPANXN3, MAGEC3, PASD1, DCAF12L1, ADGRG4, GAB3, PNCK, ZFP92, ACTRT1, GPR119, RBMXL3, DOCK11, TEX28, AMOT, CSAG1, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, DCX, ZCCHC12, NA, NA, DKC1, DNASE1L1, DUSP9, AGTR2, ELF4, EMD, CT83, SLC25A43, INTS6L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 ZNF449, VMA21, ABCD1, F8, F9, ACSL4, GPC4, FGF13, FHL1, SEPT6, FLNA, FMR1, AFF2, ATP1B4, KCNE5, LDOC1, G6PD, CT47A11, GABRA3, GABRE, FAM127B, OPN1MW, SRPK3, GDI1, SNORA70, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, PNMA3, HCFC1, CTAG2, HMGB3, HPRT1, XIAP, HTR2C, DCAF12L2, ZCCHC16, LHFPL1, IDH3G, IDS, SOWAHD, OR13H1, CCDC160, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 CXorf66, IGSF1, IL13RA1, IL13RA2, IRAK1, L1CAM, LOC389895, UBE2NL, LAMP2, ARHGAP4, SMIM10L2A, LINC00890, SH2D1A, MIR105-1, MIR105-2, MIR106A, MIR19B2, MIR92A2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MCF2, MECP2, MPP1, FAM127C, CT45A3, CT45A5, SPANXN4, MTCP1, MTM1, NDUFA1, ATP2B3, SPANXN1, SPANXN2, MIR424, OCRL, PAK3, NSDHL, ZDHHC9, LUZP4, TFDP3, MAGEC2, VGLL1, RBMX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 STK26, PLS3, PLXNB3, ATP6AP1, CT45A6, CT45A1, CXorf40B, SASH3, WDR44, CT55, TMEM255A, AVPR2, MIR448, MIR450A1, SAGE1, PLXNA3, HAUS7, ZNF280C, MBNL3, GABRQ, NXT2, NKRF, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR452, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, RGAG1, PDZD4, LRCH2, RAP2C, OPN1LW, RENBP, FAM3A, RPL10, RPL39, SPANXA2-OT1, BCORL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 BGN, CXorf56, CT47B1, SMIM10, SMIM10L2B, SPANXC, UPF3B, CT47A7, SLC6A8, SMARCA1, FUNDC2, MIR542, SOX3, SRD5A1P1, SSR4, SNORA35, SNORA36A, SNORA56, BRS3, TAZ, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, VBP1, XPNPEP2, ZIC3, ZNF75D, MIR767, MIR766, RNF113A, ZNF185, PRRG3, BRCC3, NKAP, MAP7D3, LONRF3, ALG13, NAA10, UBL4A, TMEM187, CAPN6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-034 LAGE3, SLC10A3, TKTL1, GPR101, CD99L2, USP26, TMEM164, PHF6, CUL4B, TMEM185A, SLITRK2, IRS4, MIR503HG, IKBKG, MTMR1, APLN, FAM127A, FATE1, SLC25A14, HS6ST2, FRMD7, KLHL13, FAM50A, AIFM1, TMEM257, CHRDL1, CXorf40A, FAM58A, GPR50, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1, AMMECR1) 0.184582647409559 93 0.117484969645341 0.477245613671934 20671 0.213103556993049 1 1 0 -6.86689238887642 LTS-034 NA NA NA NA LTS-034 chrX 154467738 154774986 307249 * c(RAB39B, CLIC2, TMLHE, VBP1) NA 0 NA 0.455888040797734 217 0.274717866259162 1 NA NA -5.76673786848896 LTS-034 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.160359105555585 25 0.141362736721292 0 NA NA -5.93405838215293 LTS-034 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.468392046006437 19 0.494782597423808 1 NA NA -5.76469030559808 LTS-034 chr1 14653 935222 920570 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, KLHL17, HES4, LINC01128, WASH7P, LOC729737, OR4F5, LINC00115, PLEKHN1, PERM1) 0.14 1 NA 0.792994131285525 456 0.187349970192719 1 1 0 -5.76937309035555 LTS-035 chr1 935223 1593817 658595 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, SSU72, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, MMP23B, TNFRSF18, ISG15, CDK11B) 0.351518854572318 71 0.0736745658276952 0.782419730715979 2481 0.190667918753452 1 1 0 -6.76427537254852 LTS-035 chr1 1593818 1596157 2340 * c(SLC35E2B, CDK11B) 0.328231380604322 4 0.137786066058945 1.23711064352511 60 0.531938899893906 11 8 3 -6.73871906921718 LTS-035 chr1 1596158 1596196 39 * c(SLC35E2B, CDK11B) NA 0 NA 0.624 1 NA NA NA NA NA LTS-035 chr1 1596197 1639048 42852 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.252994794901748 7 0.134263422668524 0.701539541069268 125 0.246158387772929 2 2 0 -6.83799210408091 LTS-035 chr1 1639049 1646772 7724 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.298998517027978 39 0.21809122569706 0 NA NA -5.80647301885142 LTS-035 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.739 1 NA NA NA NA NA LTS-035 chr1 1647807 1659653 11847 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.441807044274363 9 0.0247335804120633 0.77475871653675 63 0.449776090963101 0 0 0 -6.9913415276574 LTS-035 chr1 1659654 1659669 16 * c(SLC35E2B, SLC35E2) NA 0 NA 0.48 1 NA NA NA NA NA LTS-035 chr1 1659670 1662163 2494 * c(SLC35E2B, SLC35E2) 0.387112199011133 4 0.102493495728591 0.458711651711231 49 0.108429504670054 1 1 0 -6.78861032884534 LTS-035 chr1 1662164 1663708 1545 * c(SLC35E2B, SLC35E2) NA 0 NA 0.787 1 NA NA NA NA NA LTS-035 chr1 1663709 7798549 6134841 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-035 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.35584332691602 118 0.085972341583275 0.814678344155076 5347 0.271536260914739 1 1 0 -6.84395699014606 LTS-035 NA NA NA NA LTS-035 chr1 7798550 7804839 6290 * CAMTA1 NA 0 NA 0.722 1 NA NA NA NA NA LTS-035 chr1 7804840 10678488 2873649 * c(ENO1-AS1, APITD1-CORT, UBE4B, UTS2, PARK7, RBP7, CORT, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TNFRSF9, CENPS, MIR34A, RERE, SLC45A1, PEX14, PGD, PIK3CD, ERRFI1, CTNNBIP1, PIK3CD-AS1, NMNAT1, SLC2A5, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, VAMP3, H6PD) 0.339909497424049 70 0.0549891406557887 0.771437243221024 3260 0.191401156606209 1 1 0 -6.89356978509158 LTS-035 chr1 10678489 10689942 11454 * PEX14 0.474 1 NA 0.863331281385822 23 0.14864791145868 1 1 0 -5.76769162559345 LTS-035 chr1 10689943 10720640 30698 * c(PEX14, CASZ1) NA 0 NA 0.791100531250617 203 0.165783970660795 1 NA NA -5.76456855726372 LTS-035 chr1 10720641 10725125 4485 * CASZ1 NA 0 NA 1.604 1 NA NA NA NA NA LTS-035 chr1 10725126 11737051 1011926 * c(MTOR-AS1, ANGPTL7, MAD2L2, MASP2, C1orf127, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, EXOSC10, CASZ1, DISP3, SRM, FBXO44) 0.429088631683957 9 0.156508785695884 0.975970364015851 1207 0.218748335109226 2 1 1 -6.73360691474761 LTS-035 chr1 11737052 11737058 7 * MAD2L2 NA 0 NA 0.895 1 NA NA NA NA NA LTS-035 chr1 11737059 15863166 4126108 * c(NPPA-AS1, MIR4632, MAD2L2, PDPN, CTRC, FHAD1, CLCN6, LRRC38, AADACL3, TMEM51-AS1, KAZN, DNAJC16, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, DRAXIN, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, MTHFR, NPPA, NPPB, CELA2B, PLOD1, TMEM51, VPS13D, AGTRAP, MIIP, CELA2A, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, SNORA59B, TNFRSF1B, PRDM2, EFHD2, CASP9, KIAA2013, DHRS3, NA NA NA NA NA NA NA NA NA LTS-035 C1orf158, TNFRSF8, MFN2) 0.393279441018204 92 0.088341695343525 0.896669730394176 3373 0.307302194964315 2 1 1 -7.01014405275453 LTS-035 NA NA NA NA LTS-035 chr1 15863167 16200914 337748 * c(SPEN, PLEKHM2, DNAJC16, SLC25A34, TMEM82, UQCRHL, FBLIM1, RSC1A1, FLJ37453, AGMAT, DDI2) 0.393114704093965 10 0.142917069970276 1.07426903919859 637 0.534361724377491 3 2 1 -6.74268927076915 LTS-035 chr1 16200915 16202687 1773 * SPEN NA 0 NA 0.921 1 NA NA NA NA NA LTS-035 chr1 16202688 16334485 131798 * c(C1orf64, SPEN, ZBTB17) 0.442685408580053 9 0.0360327782874303 0.862531351919484 409 0.169388497677395 2 1 1 -6.91568519823827 LTS-035 chr1 16334486 16802550 468065 * c(CROCCP3, CLCNKA, CLCNKB, ARHGEF19, EPHA2, SZRD1, HSPB7, FAM131C, SPATA21, FBXO42, NECAP2, RSG1) 0.394537366761301 52 0.0790056702243694 1.09077180720649 1057 5.76124850991368 8 5 3 -6.73899661578915 LTS-035 chr1 16802551 16802964 414 * CROCCP3 NA 0 NA 0.569 1 NA NA NA NA NA LTS-035 chr1 16802965 16976679 173715 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.408035285219174 13 0.0810168548465736 0.797075410971692 102 0.254440626132605 2 1 1 -6.82771710633027 LTS-035 chr1 16976680 16976825 146 * MST1P2 0.316 1 NA 0.917179433980087 5 0.398115184337398 2 2 0 -5.76441253727283 LTS-035 chr1 16976826 17017675 40850 * MST1P2 0.303601741415058 5 0.0535322332805199 0.943157860837365 99 0.283543009469329 2 2 0 -6.74920829084449 LTS-035 chr1 17017676 17017681 6 * character(0) NA 0 NA 0.52 1 NA NA NA NA NA LTS-035 chr1 17017682 17082487 64806 * c(MST1L, ESPNP, CROCC) 0.352732911876227 6 0.0526409219777415 0.734627223561147 82 0.299984165997879 1 1 0 -6.78666575663896 LTS-035 chr1 17082488 17082501 14 * c(MST1L, CROCC) NA 0 NA 0.855 1 NA NA NA NA NA LTS-035 chr1 17082502 17197688 115187 * c(MST1L, CROCC) 0.26955296740646 23 0.0845486972900159 1.0959367854062 129 0.260157227821916 3 3 0 -6.7892496629104 LTS-035 chr1 17197689 17198273 585 * CROCC NA 0 NA 2.118 1 NA NA NA NA NA LTS-035 chr1 17198274 17274945 76672 * CROCC 0.332674237841432 3 0.263636745036297 2.25683931410394 81 0.654563514682178 8 6 2 -6.73558960852212 LTS-035 chr1 17274946 17275407 462 * CROCC NA 0 NA 1.286 1 NA NA NA NA NA LTS-035 chr1 17275408 17411304 135897 * c(PADI2, ATP13A2, MFAP2, SDHB, CROCC) 0.295924070654373 18 0.0475137750923815 1.42725514118087 451 1.27149892293016 2 2 0 -6.74042015905427 LTS-035 chr1 17411305 17413022 1718 * PADI2 NA 0 NA 1.185 1 NA NA NA NA NA LTS-035 chr1 17413023 17715397 302375 * c(PADI2, PADI4, PADI1, PADI6, PADI3) 0.226470484869802 3 0.214649326421802 1.09995182299502 404 0.24449006450548 3 3 0 -6.75268090624522 LTS-035 chr1 17715398 17764795 49398 * c(PADI6, RCC2) 0.444 1 NA 1.12581282553605 142 0.272404394660487 3 3 0 -5.76531807875208 LTS-035 chr1 17764796 19746319 1981524 * c(LOC100506730, MIR4695, IFFO2, KLHDC7A, AKR7A3, EMC1, UBR4, AKR7L, PAX7, MRTO4, PQLC2, ARHGEF10L, RCC2, TAS1R2, ACTL8, CAPZB, IGSF21, AKR7A2, ALDH4A1) 0.373966873910776 43 0.0463968867096222 1.04604488712025 1959 0.280028118026964 3 2 1 -7.18537914068393 LTS-035 chr1 19746320 19775222 28903 * CAPZB NA 0 NA 0.862 1 NA NA NA NA NA LTS-035 chr1 19775223 21503315 1728093 * c(MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, OTUD3, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, MINOS1, NBL1, HP1BP3, PLA2G2A, PLA2G5, RNF186, CAMK2N1, KIF17, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, EIF4G3, CDA) 0.377679264709473 53 0.129435410143937 0.905895016268717 1971 0.221766668657919 2 1 1 -6.94012734754909 LTS-035 chr1 21503316 21929260 425945 * c(LOC100506801, ECE1, ALPL, RAP1GAP, NBPF3, EIF4G3) 0.345460465001167 14 0.148387319887168 1.0920464455612 430 0.440809854114156 4 3 1 -6.80652359889462 LTS-035 chr1 21929261 21934667 5407 * RAP1GAP 0.5 1 NA 1.01999571137497 19 0.150568998774027 2 2 0 -5.76464008603699 LTS-035 chr1 21934668 22215210 280543 * c(HSPG2, LDLRAD2, RAP1GAP, USP48) 0.476975140376015 14 0.020005493750962 1.01356147377543 824 0.237080184591799 2 1 1 -9.28662611652389 LTS-035 chr1 22215211 25586803 3371593 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, CLIC4, SYF2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, NCMAP, WNT4, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, GRHL3, IL22RA1, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, RUNX3, STPG1, ZBTB40, CDC42 NA NA NA NA NA NA NA NA NA LTS-035 ) 0.429927888840811 67 0.0936577461062286 0.96033224793087 3946 0.228994666440974 2 1 1 -6.7502348473057 LTS-035 NA NA NA NA LTS-035 chr1 25586804 25598903 12100 * RSRP1 NA 0 NA 0.031 1 NA NA NA NA NA LTS-035 chr1 25598904 25656954 58051 * c(RSRP1, RHD) NA 0 NA 0.0717480963064133 85 0.0648143481020056 0 NA NA -13.4670100784121 LTS-035 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 1.031 1 NA NA NA NA NA LTS-035 chr1 25666924 34192379 8525456 * c(FAM229A, MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR3605, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, AZIN2, TMEM54, CSMD2, RAB42, FAM46B, KDF1, RNF19B, A3GALT2, COL16A1, DCDC2B, ZNF362, LINC01225, PDIK1L, PAQR7, PHC2, FAM76A, TXLNA, EPB41, AK2, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, FNDC5, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, NA NA NA NA NA NA NA NA NA LTS-035 HCRTR1, HDAC1, HMGN2, HPCA, MTMR9LP, ZBTB8OS, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, LCK, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, BSDC1, PPP1R8, XKR8, TMEM39B, TMEM57, TRIM62, PEF1, PIGV, IQCC, TMEM234, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, KIAA1522, RBBP4, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, S100PBP, CEP85, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MARCKSL1, ZBTB8A, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, ZBTB8B, ZSCAN20, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, SYNC, TSSK3, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, FAM167B, SYTL1, SNHG12, FCN3, YARS, EIF3I, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.448357040949622 166 0.0779149209282109 0.955427365881172 10779 0.227078593107036 2 1 1 -6.84843771237934 LTS-035 NA NA NA NA LTS-035 chr1 34192380 34204784 12405 * CSMD2 NA 0 NA 2.069 1 NA NA NA NA NA LTS-035 chr1 34204785 35484743 1279959 * c(TMEM35B, SMIM12, CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, DLGAP3, LOC653160, C1orf94, ZMYM6) 0.3799403637684 17 0.180172119505374 1.11316304500897 703 0.404711014303065 3 2 1 -6.75975862109602 LTS-035 chr1 35484744 35734797 250054 * c(SFPQ, ZMYM1, ZMYM4, ZMYM6) NA 0 NA 0.918049160415883 225 0.204137896418005 2 NA NA -5.77968158808698 LTS-035 chr1 35734798 35790842 56045 * ZMYM4 NA 0 NA 1.317 1 NA NA NA NA NA LTS-035 chr1 35790843 36029001 238159 * c(NCDN, KIAA0319L, ZMYM4) 0.472 1 NA 1.29732989074488 390 0.288769031173657 4 4 0 -5.77120138771418 LTS-035 chr1 36029002 36029291 290 * NCDN NA 0 NA 1.061 1 NA NA NA NA NA LTS-035 chr1 36029292 36367780 338489 * c(C1orf216, AGO4, NCDN, AGO1, TFAP2E, PSMB2, CLSPN) 0.461462359946881 7 0.0498411763218211 1.13984066286205 607 0.279879913685051 2 1 1 -7.09366166082455 LTS-035 chr1 36367781 36646061 278281 * c(COL8A2, AGO3, AGO1, TRAPPC3, TEKT2, ADPRHL2, MAP7D1) NA 0 NA 1.10069784208213 591 0.240625655603031 3 NA NA -5.77860467247615 LTS-035 chr1 36646062 36646181 120 * MAP7D1 NA 0 NA 1.414 1 NA NA NA NA NA LTS-035 chr1 36646182 36752152 105971 * c(MAP7D1, THRAP3) 0.348 1 NA 1.36851226710322 19 0.208560199283435 4 4 0 -5.76454408334535 LTS-035 chr1 36752153 45504806 8752654 * c(LOC100129924, NFYC-AS1, KDM4A-AS1, MIR4255, MIR3659, SLFNL1-AS1, GJA9-MYCBP, MIR5581, MIR5584, ZMPSTE24, PPIE, PPIH, CAP1, SF3A3, EBNA1BP2, KIF2C, MED8, ERMAP, PLK3, TMCO2, ZNF684, C1orf122, OSCP1, KLF17, TMEM125, COL9A2, CSF3R, MANEAL, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FHL3, FOXJ3, SCMH1, SZT2, MACF1, MYCBP, HEYL, BEST4, SNORD55, RSPO1, EPHA10, RIMKLA, NA NA NA NA NA NA NA NA NA LTS-035 GRIK3, GUCA2A, GUCA2B, GNL2, LINC01343, C1orf228, ZFP69, TCTEX1D4, BMP8A, INPP5B, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, ZNF691, UTP11, HPCAL4, ATP6V0B, POU3F1, TRIT1, RHBDL2, C1orf109, CDCA8, RNF220, EVA1B, PPT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, RLF, RPS8, OXCT2, RRAGC, P3H1, KIAA0754, SMAP2, MEAF6, EXO5, ELOVL1, ST3GAL3, MRPS15, SLC2A1, ZFP69B, SLC6A9, BMP8B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNORA55, TIE1, LINC01137, PPIEL, CCDC30, UROD, DNALI1, ERI3, C1orf50, TMEM53, AKIRIN1, HECTD3, YRDC, PPCS, SH3D21, SNIP1, ZC3H12A, HYI, STK40, ZMYND12, NT5C1A, MFSD2A, LSM10, PTCH2, B4GALT2, PABPC4, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, CDC20, THRAP3) 0.314016999458538 218 0.063635523360973 1.52019170229155 10716 0.375170567670747 5 4 1 -6.79593393098799 LTS-035 NA NA NA NA LTS-035 chr1 45504807 45553932 49126 * ZSWIM5 NA 0 NA 1.58424013189477 37 0.243072079918768 5 NA NA -5.76441069795859 LTS-035 chr1 45553933 45671383 117451 * ZSWIM5 NA 0 NA 0.855 1 NA NA NA NA NA LTS-035 chr1 45671384 45671966 583 * ZSWIM5 0.492 1 NA 0.928208137069799 11 0.226767722570916 2 2 0 -5.76443008793474 LTS-035 chr1 45671967 51766490 6094524 * c(EFCAB14-AS1, MKNK1-AS1, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, LRRC41, FAF1, TOE1, CCDC163, DMBX1, KNCN, MOB3C, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, ELAVL4, CYP4Z1, SLC5A9, FAAH, TTC39A, FOXE3, FOXD2, MAST2, MMACHC, CYP4X1, RNF11, CYP4A22, C1orf185, IPP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MUTYH, NASP, PRDX1, TMEM69, CMPK1, LURAP1, SPATA6, POMGNT1, ZSWIM5, GPBP1L1, DMRTA2, ATPAF1, NA NA NA NA NA NA NA NA NA LTS-035 STIL, TAL1, RPS15AP10, FAAHP1, UQCRH, BEND5, RAD54L, FOXD2-AS1, HPDL, AGBL4, PIK3R3, MKNK1, EFCAB14) 0.441715909231807 113 0.0638913500750464 0.990392138212761 4361 0.251984254281148 2 1 1 -6.77938613619766 LTS-035 NA NA NA NA LTS-035 chr1 51766491 51766820 330 * TTC39A 0 1 NA 1.53361607742025 7 1.7661121007402 5 5 0 -5.76441019710444 LTS-035 chr1 51766821 52729430 962610 * c(MIR761, KTI12, OSBPL9, EPS15, TTC39A, NRDC, TXNDC12, RAB3B, BTF3L4, ZFYVE9) 0.312996549374627 9 0.187872962397467 0.972640332858213 1155 0.320033710040845 2 2 0 -6.73889090476692 LTS-035 chr1 52729431 52818188 88758 * c(CC2D1B, ZFYVE9) 0.407 1 NA 1.06983121157441 130 0.267937836665957 2 2 0 -5.77012226219431 LTS-035 chr1 52818189 89318949 36500761 * c(LINC01135, ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, MIR3671, LINC01364, LOC100507564, LOC100507634, FPGT-TNNI3K, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, PATJ, IFI44, IFI44L, DNAJB4, HHLA3, MYSM1, OMA1, LRRC42, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, TCEANC2, PODN, C1orf87, CPT2, CRYZ, SAMD13, C1orf52, UBE2U, CTBS, GLIS1, MGC27382, NA NA NA NA NA NA NA NA NA LTS-035 CTH, IL23R, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, CC2D1B, TCTEX1D1, SLC44A5, AK4, CLCA4, USP33, SLC35D1, ADGRL2, ZCCHC11, USP24, ITGB3BP, LPAR3, DDAH1, SSBP3, MCOLN2, COL24A1, PCSK9, ST6GALNAC3, NEGR1, PARS2, ZZZ3, ACOT11, SERBP1, AK5, SNORD45B, SNORD45A, FOXD3, ANGPTL3, GNG5, GPX7, GTF2B, ALG6, FAM151A, LINC01140, ACADM, FAM159A, CYR61, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 IL12RB2, JAK1, JUN, MROH7, MIGA1, LDLRAD1, UOX, LEPR, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, LHX8, LINC01555, ZYG11A, MSH4, NFIA, ROR1, ORC1, TNNI3K, SH3GLB1, MRPL37, HOOK1, PDE4B, HSPB11, PGM1, PIN1P1, YIPF1, L1TD1, ZNHIT6, LEPROT, GIPC2, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, MCOLN3, PRKAA2, LRRC40, DEPDC1, PRKACB, NDC1, PKN2, GNG12, PTGER3, PTGFR, ODF2L, LRRC7, CACHD1, MIER1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DNASE2B, RABGGTB, CYB5RL, RPE65, SCP2, DMRTB1, ADGRL4, LOC646626, SLC1A7, COA7, SNORD45C, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, ZYG11B, TTLL7, WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, TM2D1, SYDE2, SGIP1, EFCAB7, ATG4C, PRPF38A, LMO4, DOCK7, PLPP3, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, ZRANB2, TMEM59, CLCA3P, CLCA2, HS2ST1, DNAJC6) 0.435524252426845 322 0.0882180196640149 0.990287275621448 17685 0.764293285432712 2 1 1 -6.74539840569929 LTS-035 NA NA NA NA LTS-035 chr1 89318950 93913894 4594945 * c(CCDC18-AS1, GLMN, GBP4, GBP5, GBP6, HFM1, DR1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, FNBP1L, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.436128080023702 27 0.0964624279188535 0.919541708424471 3226 0.221880460266335 2 1 1 -6.95901685682081 LTS-035 chr1 93913895 93964951 51057 * FNBP1L NA 0 NA 1.218 1 NA NA NA NA NA LTS-035 chr1 93964952 109794151 15829200 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LOC100129620, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, VAV3, HENMT1, OLFM3, CNN3, SLC44A3, C1orf194, LRRC39, COL11A1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, FNDC7, SASS6, AGL, DPYD, S1PR1, CELSR2, ALG14, EXTL2, F3, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKNAD1, RWDD3, GCLM, AMY2A, AMY2B, FAM102B, GPSM2, SLC25A24, DNTTIP2, FRRS1, MIR137HG, MIR137, FLJ31662, NA NA NA NA NA NA NA NA NA LTS-035 SNX7, DPH5, GPR88, TRMT13, PALMD, FNBP1L, PRPF38B, PRMT6, RNPC3, TMEM167B, KIAA1324, PTBP2, ABCD3, SARS, SPATA42, MFSD14A, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, MIR553, LOC729970, LOC729987, VCAM1, BCAR3, CDC14A, RTCA, ARHGAP29, DNAJA1P5, PLPPR4) 0.444861041264042 94 0.051583340309478 0.97831745082545 5875 0.339589470399402 2 1 1 -6.81920377697819 LTS-035 NA NA NA NA LTS-035 chr1 109794152 110051313 257162 * c(ATXN7L2, CELSR2, SYPL2, CYB561D1, MYBPHL, PSMA5, AMIGO1, SORT1, PSRC1) 0.449 1 NA 1.10570143257443 985 0.263374825180885 3 3 0 -5.77399831612294 LTS-035 chr1 110051314 115828925 5777612 * c(LINC01160, AP4B1-AS1, MIR4256, FAM212B-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CSF1, SYT6, CHIAP2, DENND2C, UBL4B, HIPK1, AKR7A2P1, ALX3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, FAM19A3, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, PPM1J, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, NA NA NA NA NA NA NA NA NA LTS-035 PGCP1, NGF, NRAS, OVGP1, ATP5F1, TRIM33, RSBN1, ST7L, LRIF1, CTTNBP2NL, FAM212B, OLFML3, AMIGO1, RAP1A, CYMP, LOC643355, LOC643441, RBM15, DCLRE1B, SLC16A1, SYCP1, TSHB, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, CAPZA1, GPR61, PROK1, STRIP1, SLC16A4, CD53, LRIG2) 0.407172333232609 101 0.0640078568815912 0.879819242737157 6207 0.232899141488461 2 1 1 -7.44320494413686 LTS-035 NA NA NA NA LTS-035 chr1 115828926 116311170 482245 * c(NGF, VANGL1, CASQ2) 0.467657946464043 16 0.0207090962300789 1.09608693985659 295 0.22736886092026 2 1 1 -8.63310923898403 LTS-035 chr1 116311171 116311217 47 * CASQ2 NA 0 NA 0.752 1 NA NA NA NA NA LTS-035 chr1 116311218 120927081 4615864 * c(MIR942, MIR320B1, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HIST2H2BA, NBPF7, ATP1A1, NHLH2, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, FAM72B, TBX15, VTCN1, TRIM45, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.397939467156154 111 0.0794324163255076 0.895618789564901 3514 0.428018528146179 2 1 1 -6.92274122164033 LTS-035 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.845733703109347 79 0.25128432774903 1 NA NA -5.7890939367767 LTS-035 chr1 143912360 144013865 101506 * FAM72D 0.283 1 NA 0.671088014349236 5 0.435930269653301 0 0 0 -5.77152346300946 LTS-035 chr1 144013866 145457157 1443292 * c(NBPF10, NBPF20, TXNIP, HFE2, NOTCH2NL, LOC653513, NA, PFN1P2, POLR3GL, SEC22B, PDE4DIP) 0.349684188118572 79 0.0868609524285783 0.951880164322984 911 0.518753076410378 1 1 0 -6.88703691587357 LTS-035 chr1 145457158 148902310 3445153 * c(NBPF10, NBPF20, LINC00624, MIR5087, PIAS3, POLR3C, CD160, LIX1L, ANKRD35, NBPF12, PDIA3P1, NUDT17, FMO5, NBPF14, GJA5, GJA8, RNF115, NBPF15, ANKRD34A, LINC01138, ACP6, GPR89B, PDZK1, PRKAB2, BCL9, NBPF13P, PPIAL4D, GPR89A, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, POLR3GL, ITGA10, PEX11B, CHD1L, RBM8A) 0.394826164293237 33 0.0771346348532188 1.04085194851428 1904 0.270097622557935 2 1 1 -6.92603448431907 LTS-035 chr1 148902311 149038810 136500 * LOC645166 NA 0 NA 0.653 1 NA NA NA NA NA LTS-035 chr1 149038811 149676551 637741 * c(FCGR1CP, LOC388692, LINC00869) NA 0 NA 0.669487994163157 40 0.199780634504641 0 NA NA -5.96390428990967 LTS-035 chr1 149676552 152760550 3083999 * c(C1orf68, LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, BNIPL, CTSK, CTSS, ECM1, LCE4A, ENSA, FCGR1A, FLG, POGZ, RPRD2, CA14, LCE5A, LCE2B, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, LYSMD1, HRNR, FLG2, ARNT, MCL1, HIST2H2BF, NA NA NA NA NA NA NA NA NA LTS-035 KPRP, CRNN, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, CRCT1, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, LCE3D, SELENBP1, PRPF3, SETDB1, SV2A) 0.392723136898784 84 0.0818802877749243 1.04736876398784 6214 0.310262650197726 2 1 1 -6.90995466989539 LTS-035 NA NA NA NA LTS-035 chr1 152760551 152777462 16912 * c(LCE1C, LCE1D, LCE1E) NA 0 NA 2.04915193013755 40 0.947955543356062 7 NA NA -5.76442180487483 LTS-035 chr1 152777463 155581141 2803679 * c(MIR190B, MIR4258, LOC100505666, SCAMP3, ADAR, HAX1, PMVK, FAM189B, JTB, SLC27A3, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, S100A16, CREB3L4, LELP1, DCST1, SPRR4, EFNA1, EFNA3, EFNA4, KRTCAP2, CRTC2, FDPS, SNAPIN, RUSC1, C1orf43, CHTOP, GBA, GBAP1, SLC39A1, RUSC1-AS1, S100A7A, LCE1A, LCE1B, LCE1C, IL6R, ILF2, IVL, KCNN3, C1orf189, LOR, SMCP, LCE6A, MTX1, MUC1, NPR1, ZBTB7B, PKLR, DPM3, NA NA NA NA NA NA NA NA NA LTS-035 MSTO1, UBE2Q1, ASH1L, LENEP, SLC50A1, PGLYRP4, ATP8B2, PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, MIR555, MIR92B, THBS3, TPM3, TRIM46, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DENND4B) 0.395544008389296 53 0.0784491413553419 1.04656085924997 6189 0.242938331520393 2 1 1 -6.9384931380599 LTS-035 NA NA NA NA LTS-035 chr1 155581142 155708266 127125 * c(MSTO1, YY1AP1, DAP3) NA 0 NA 1.4357874756209 256 0.404801613065664 4 NA NA -5.76509701220234 LTS-035 chr1 155708267 176661419 20953153 * c(MIR921, MSTO2P, TSTD1, CADM3-AS1, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LINC01133, LOC100505795, LOC100505918, LOC100506023, GAS5-AS1, PMF1-BGLAP, MIR4654, DNM3OS, MIR1295B, MIR5187, GPA33, C1orf61, SLC19A2, NES, PMF1, DUSP12, GLMP, SLAMF6, FCRL1, FCRL3, FMO9P, TADA1, SH2D1B, KLHDC9, OR10J5, UHMK1, FCRLB, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, NA NA NA NA NA NA NA NA NA LTS-035 ITLN2, RC3H1, METTL11B, FAM78B, LRRC71, PYHIN1, TTC24, DPT, ETV3, F5, FCER1A, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, KIAA0907, KIFAP3, ATF6, SYT11, PRRC2C, FMO1, FMO2, FMO3, FMO4, SMG5, NCSTN, GPR161, ACKR1, ARHGAP30, CFAP126, CFAP45, MPC2, OLFML2B, DNM3, TIPRL, OR10J1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, USP21, CACYBP, KLHL20, SLC9C2, C1orf204, C1orf111, LINC01142, LAMTOR2, NME7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HDGF, APCS, HSPA6, HSPA7, APOA2, RXFP4, ANKRD45, CCDC190, IFI16, OR10R2, FCRL6, FASLG, CYCSP52, INSRR, PEAR1, SFT2D2, KCNJ9, KCNJ10, ILDR2, FMO6P, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, C1orf226, LOC400794, LMX1A, LY9, MIR9-1, MEF2D, MGST3, MNDA, MPZ, ETV3L, LRRC52, LOC440700, OR10J3, SERPINC1, MYOC, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, ATP1B1, NIT1, NTRK1, DDR2, DCAF8, F11R, PBX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RRNAD1, SUCO, HSD17B7, UFC1, METTL13, CD244, PFDN2, PIGC, PRRX1, TMCO1, POU2F1, GON4L, GPATCH4, DUSP23, PPOX, DARS2, KIRREL, YY1AP1, PRCC, ITLN1, C1orf112, ADCY10, DCAF6, SLAMF8, UBQLN4, RAB25, RHBG, SCYL3, VANGL2, IGSF9, POGK, CCDC181, SLAMF7, CADM3, PEX19, RGS4, RIT1, HAPLN2, GAS5, PAPPA2, SNORD74, RXRG, BGLAP, XCL1, BCAN, SDHC, TNN, MRPS14, SELE, SELL, SELP, RPL31P11, SEMA4A, RFWD2, LOC646268, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SLAMF1, PCP4L1, UAP1, SPTA1, SSR2, SCARNA3, SCARNA4, SNORA80E, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR556, MIR557, TNR, TOP1P1, CCT3, TNFSF4, LOC730159, UCK2, USF1, MIR765, DAP3, LINC00626, FCRL2, MRPL24, PAQR6, MROH9, OR6N2, OR6K2, NECTIN4, ISG20L2, FCRL5, FCRL4, NUF2, TAGLN2, TOMM40L, TMEM79, CASQ1, ZBTB37, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, PEA15, B4GALT3, CREG1, CD84, SLAMF9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TNFSF18, MPZL1, SH2D2A, CD1A, TBX19, CD1B, FCGR2C, CD1C, CD1D, CD1E, CENPL, ARHGEF2, CD247, DEDD, CD5L, DUSP27, RCSD1, MEX3A, METTL18, GORAB, C1orf105, GPR52, PIGM, IGSF8, AIM2, ADAMTS4, PRDX6, CD48, SLC25A44, KIAA0040, NOS1AP, ARHGEF11, RABGAP1L, NR1I3) 0.39039901789273 328 0.0782052759121961 1.0552022072795 20169 0.456042115005476 2 1 1 -7.16372635076149 LTS-035 NA NA NA NA LTS-035 chr1 176661420 178819828 2158409 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.399450073820685 34 0.0466748910501723 1.17924306731645 1104 0.417080394977347 3 2 1 -6.73813604240163 LTS-035 chr1 178819829 181549921 2730093 * c(GM140, MIR3121, LHX4-AS1, STX6, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, ABL2, MR1, IER5, RALGPS2, QSOX1, KIAA1614, TOR3A, SOAT1, CACNA1E, NPHS2, ACBD6, LHX4, ANGPTL1, XPR1, CEP350, FAM20B) 0.400451316747075 44 0.101904929681768 1.07207799872756 2977 0.241171671858291 3 2 1 -6.98552243330966 LTS-035 chr1 181549922 181620446 70525 * CACNA1E NA 0 NA 1.233 1 NA NA NA NA NA LTS-035 chr1 181620447 181762967 142521 * CACNA1E 0.228466164131143 2 0.305470129472589 1.25035577009641 234 0.397057779762932 3 3 0 -6.7365444180831 LTS-035 chr1 181762968 181770537 7570 * CACNA1E 0.397 1 NA 1.20506009925768 75 0.370749937337872 3 3 0 -5.76442380685539 LTS-035 chr1 181770538 183592658 1822121 * c(ZNF648, TEDDM1, DHX9, NMNAT2, GLUL, LOC284648, SMG7-AS1, RGSL1, LINC00272, LAMC1, LAMC2, NCF2, RGS16, RNASEL, CACNA1E, NPL, SHCBP1L, RGS8, SMG7) 0.461585776440732 46 0.0321265688351678 1.18074669615501 1861 0.24621709934984 4 2 2 -7.83351176735111 LTS-035 chr1 183592659 183595318 2660 * character(0) NA 0 NA 0.759 1 NA NA NA NA NA LTS-035 chr1 183595319 196716667 13121349 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, CFH, BRINP3, KCNT2, APOBEC4, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2) 0.443658698775262 45 0.0388978849623659 1.10551865350294 3788 0.271848861445644 3 2 1 -7.73606392745317 LTS-035 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.082 1 NA NA NA NA NA LTS-035 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.0717007185725417 107 0.0187995252006361 0 NA NA -20.6475040364782 LTS-035 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.125 1 NA NA NA NA NA LTS-035 chr1 196857130 200144341 3287212 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LHX9, PTPRC, CFHR5) 0.392881637078116 30 0.113121763305446 1.07208419242123 1736 0.299021293821173 3 2 1 -6.93757989660157 LTS-035 chr1 200144342 201178788 1034447 * c(KIF21B, CAMSAP2, ZNF281, NR5A2, TMEM9, GPR25, LINC00862, C1orf106, ASCL5, CACNA1S, DDX59, IGFN1, KIF14) 0.44670091582724 44 0.0469914019844601 1.16594526007154 1416 0.361449609388872 4 2 2 -6.99000957690901 LTS-035 chr1 201178789 201178819 31 * IGFN1 0.261 1 NA 3.119 1 NA NA NA NA NA LTS-035 chr1 201178820 201288897 110078 * c(PKP1, IGFN1) 0.401485782982757 8 0.0584019324533505 1.25076538754481 174 0.269490776501462 3 2 1 -6.73694573694619 LTS-035 chr1 201288898 201288996 99 * PKP1 NA 0 NA 1.125 1 NA NA NA NA NA LTS-035 chr1 201288997 205627886 4338890 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, MFSD4A, SHISA4, ELF3, ELK4, PLEKHA6, NFASC, FMOD, PHLDA3, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, LOC284578, UBE2T, RPS10P7, KISS1, TMEM81, LAD1, NA, MDM4, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CDK18, CYB5R1, PIK3C2B, PKP1, LAX1, KLHDC8A, ETNK2, PRELP, NA NA NA NA NA NA NA NA NA LTS-035 IPO9, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, LINC01136, BTG2, NUAK2, LINC00260, PPP1R15B, PPFIA4, SLC45A3, NAV1, TMEM183A, GPR37L1, LEMD1, SOX13, ZC3H11A, TMCC2) 0.355298566401788 117 0.0753679079207857 1.40020322011429 6961 0.332076618530319 4 3 1 -6.73773880776813 LTS-035 NA NA NA NA LTS-035 chr1 205627887 205634058 6172 * c(ELK4, SLC45A3) NA 0 NA 1.43298386790158 55 0.207189005922332 4 NA NA -5.76452480296853 LTS-035 chr1 205634059 205681919 47861 * c(ELK4, SLC45A3) NA 0 NA 0.638 1 NA NA NA NA NA LTS-035 chr1 205681920 205684067 2148 * NUCKS1 0.485 1 NA 0.83770715533631 43 0.162851143737498 1 1 0 -5.76466627954744 LTS-035 chr1 205684068 214507653 8823586 * c(MIR4260, MIR3122, LINC00538, IL24, SLC26A9, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, SRGAP2, SLC41A1, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, LOC284581, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, LAMB3, MIR205, MIR29C, CD46, C1orf186, ATF3, NEK2, G0S2, IL20, DTL, PFKFB2, PIGR, PLXNA2, TMEM206, PPP2R5A, AVPR1B, YOD1, BATF3, HHAT, RCOR3, SERTAD4, NA NA NA NA NA NA NA NA NA LTS-035 PROX1, SMYD2, CAMK1G, SERTAD4-AS1, MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, SLC30A1, C1orf116, VASH2, TRAF3IP3, RASSF5, FCAMR, DYRK3, LINC00467, RAB29, ANGEL2, FCMR, MAPKAPK2, CD34, IKBKE, LPGAT1) 0.421674537750641 145 0.0564526570714033 0.900678964812064 6490 0.244504909824606 2 1 1 -7.30683757064028 LTS-035 NA NA NA NA LTS-035 chr1 214507654 214509953 2300 * SMYD2 NA 0 NA 1.071 1 NA NA NA NA NA LTS-035 chr1 214509954 218510133 4000180 * c(LINC00210, CENPF, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, SMYD2, PTPN14, USH2A) 0.44422095455975 28 0.0381064194900178 0.98903033585315 1688 0.254408411987408 2 1 1 -6.88215280597328 LTS-035 chr1 218510134 233519119 15008986 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, MIR4666A, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, LYPLAL1, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, ITPKB, NA NA NA NA NA NA NA NA NA LTS-035 ARF1, MIA3, STUM, FAM89A, CAPN8, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, RRP15, TRIM17, EGLN1, MAP10, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, LYPLAL1-AS1, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, TGFB2, LEFTY2, TLR5, TP53BP2, TSNAX, TGFB2-AS1, WNT9A, C1orf35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TTC13, PGBD5, C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.421431262500527 288 0.0696680384828176 0.902173368913394 11565 0.225588287073528 2 1 1 -7.75060121981581 LTS-035 NA NA NA NA LTS-035 chr1 233519120 233519124 5 * MLK4 NA 0 NA 0.617 1 NA NA NA NA NA LTS-035 chr1 233519125 236899015 3379891 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01354, LINC01132, MIR4753, MIR4671, MIR4427, LYST, EDARADD, SLC35F3, B3GALNT2, RBM34, GNG4, IRF2BP2, KCNK1, COA6, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TARBP1, TBCE, GPR137B, MLK4, ACTN2, GGPS1, TOMM20) 0.410964528542024 100 0.0655935787692483 0.861937290770997 2393 0.239025316949077 2 1 1 -7.29482474457917 LTS-035 chr1 236899016 247614896 10715881 * c(AKT3, LOC100130331, MIR3123, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2B11, WDR64, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, LINC01139, C1orf229, MAP1LC3C, MTR, DESI2, SCCPDH, KIF26B, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, SMYD3, LINC01347, ZNF124, ZNF669, EFCAB2, ZNF496, KMO, ACTN2, NA NA NA NA NA NA NA NA NA LTS-035 EXO1, ZNF670, CEP170) 0.421989451516929 110 0.0844504014708663 0.929816824380906 5060 0.294616304728487 2 1 1 -6.93123149286746 LTS-035 NA NA NA NA LTS-035 chr1 247614897 247615340 444 * OR2B11 0.349 1 NA 0.941529404452491 11 0.312759128927155 2 2 0 -5.76441447295911 LTS-035 chr1 247615341 249143646 1528306 * c(MIR3124, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, GCSAML, GCSAML-AS1, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, OR2W5, OR13G1, LYPD8, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3) 0.376458183145264 66 0.0962281295347307 0.984685762420668 1276 0.627229652125618 3 2 1 -6.85683144931263 LTS-035 chr1 249143647 249214134 70488 * c(PGBD2, ZNF692, ZNF672) NA 0 NA 0.837013746811734 155 0.164474261888078 1 NA NA -5.77245692742071 LTS-035 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.468 1 NA 0.992883360361457 85 0.309006765674302 2 2 0 -5.76460525744823 LTS-035 chr2 218387 69409029 69190643 * c(SNORA70B, MIR216B, SLC8A1-AS1, OST4, LINC01126, LOC100132215, LINC01119, DBIL5P2, ARHGEF33, LOC100271832, LOC100288911, MIR1301, BRE-AS1, SNORA80B, MIR4261, MIR4263, MIR3125, MIR4262, MIR3126, MIR3682, GTF3C2-AS1, LOC100505716, CEBPZOS, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4765, MIR4757, MIR4434, MIR4778, MIR4429, MIR4432, MIR548AD, MIR5192, LINC00570, ACTR2, PREB, LRPPRC, PDIA6, RMDN2-AS1, NA NA NA NA NA NA NA NA NA LTS-035 CEBPZ, MYCNOS, C1D, CCT4, CENPA, CDC42EP3, CGREF1, B3GNT2, SIX2, PROKR1, RAB10, ADCY3, GPR75, YWHAQ, GTF2A1L, STON1, EMILIN1, CFAP36, GPN1, CCDC85A, KLHL29, WDR92, PPP1R21, CMPK2, MBOAT2, TMEM18, C2orf73, CIB4, CLHC1, PLEKHH2, OSR1, TTC32, ZNF513, GALM, TMEM178A, C2orf50, PQLC3, AHSA2, LINC01105, COMMD1, TCF23, GAREM2, PUS10, LINC00309, PLB1, MYADML, FAM84A, RMDN2, GDF7, CYP1B1, ADGRF3, OXER1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FAM179A, DDX1, UBXN2A, KCNG3, DNMT3A, DTNB, E2F6, CYS1, GKN2, APLF, KRTCAP3, TMEM17, SPRED2, EPAS1, EFEMP1, FKBP1B, MAPRE3, SLC4A1AP, EFR3B, MYT1L, WDR43, LPIN1, CEP68, PSME4, EHBP1, PUM2, RHOQ, HAAO, FOSL2, NTSR2, PRKD3, ALK, SPDYA, ATP6V1C2, RNASEH1, FSHR, FTH1P3, LCLAT1, GPATCH11, RASGRP3, QPCT, CNRIP1, FAM98A, IFT172, GCKR, SH3YL1, SNORD53, ERLEC1, BMP10, EML4, FAM150B, LINC00486, C2orf61, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DNAJC5G, IAH1, FLJ33534, CYP1B1-AS1, STON1-GTF2A1L, TRIB2, LGALSL, MSH6, GTF3C2, GRHL1, NRBP1, HADHA, HADHB, EHD3, HPCAL1, FOXN2, APOB, C2orf70, PRR30, LINC00298, LINC00299, ID2, LOC339803, C2orf74, LOC339807, LINC01115, MSGN1, CDKL4, PRORSD1P, GEN1, C2orf48, PFN4, FAM228B, LOC375196, KCNF1, KCNK3, KCNS3, KHK, KIF3C, RNF144A-AS1, RHOB, MFSD2B, C2orf71, LOC388942, TMEM247, LINC01118, TSPYL6, PTRHD1, SULT6B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LHCGR, LOC400940, LINC00487, LINC00954, C2orf91, LINC01121, EML6, LINC01122, LINC01185, LOC400958, LTBP1, MIR216A, MIR217, EPCAM, MATN3, MDH1, MEIS1, MPV17, CAPN14, MSH2, MTIF2, MYCN, CHAC2, ODC1, OTX1, ITSN2, WDPCP, MEMO1, TRAPPC12, ASB3, CRIM1, DNAJC27, ATRAID, VPS54, NBAS, DYNC2LI1, SF3B6, YPEL5, CPSF3, PEX13, ACP1, VIT, PIGF, BCL11A, PLEK, SNTG2, POMC, ATAD2B, ETAA1, HEATR5B, AFTPH, TMEM214, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PPM1B, PPM1G, SLC35F6, PPP1CB, TRMT61B, FANCL, SRBD1, ASXL2, ADI1, PPP3R1, FBXO48, NDUFAF7, TTC27, SLC30A6, CCDC88A, PRKCE, ALLC, EIF2AK2, GKN1, KCNK12, DPYSL5, PNO1, RPL23AP32, RTN4, TRIM54, PELI1, TTC7A, PPP4R3B, BIRC6, KIDINS220, MTA3, WDR35, RDH14, NLRC4, RAB1A, REL, AGBL5, LDAH, RPS7, RPS27A, RRM2, SDC1, THADA, RBKS, ATL2, ABCG5, ABCG8, SRSF7, HS1BP3, LOC644838, LOC645949, FNDC4, PAPOLG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SIX3, SLC1A4, SLC3A1, FAM228A, SLC8A1, SOS1, SOX11, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, ADAM17, SNORD92, MIR558, MIR559, TPO, TSSC1, LINC01249, LOC728730, C1GALT1C1L, RAD51AP2, DNAJC27-AS1, MORN2, MEIS1-AS3, MYT1L-AS1, UCN, UGP2, VRK2, VSNL1, XDH, XPO1, SLC30A3, PXDN, COLEC11, CAD, CENPO, GALNT14, CCDC121, SMC6, CLIP4, CAMKMT, GEMIN6, NOL10, FBXO11, WDCP, CALM2, THUMPD2, FAM49A, LBH, FAM161A, ANTXR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 C2orf16, YIPF4, ZNF512, KIAA1841, KLF11, DPY30, ABHD1, MAP4K3, SELENOI, NCOA1, PNPT1, ASAP2, SLC5A6, EIF2B4, TAF1B, MCFD2, ATP6V1E2, DHX57, PKDCC, RSAD2, COX7A2L, CAPN13, ITGB1BP1, DRC1, HNRNPLL, NT5C1B, NRXN1, OTOF, CRIPT, ROCK2, TP53I3, MRPL33, BRE, PREPL, FEZ2, SOCS5, GREB1, USP34, LAPTM4A, RNF144A, SNX17, SERTAD2, ACYP2, SUPT7L, ARHGAP25) 0.446481153074203 691 0.0760376471910326 1.01086153240672 35063 0.348976710962118 2 1 1 -7.09241249762903 LTS-035 NA NA NA NA LTS-035 chr2 69409030 69622999 213970 * c(GFPT1, ANTXR1) 0 1 NA 0.995167982116027 209 0.334386127424328 2 2 0 -5.76468415639331 LTS-035 chr2 69623000 70906115 1283116 * c(SNORA36C, LOC100133985, SNRNP27, ADD2, ASPRV1, AAK1, NFU1, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, C2orf42, GMCL1, SNRPG, TGFA, TIA1, FAM136A) 0.256696428699533 9 0.246166666666667 0.965022675983492 1425 0.332880751234848 2 2 0 -6.74909082398414 LTS-035 chr2 70906116 70933636 27521 * ADD2 0.426 1 NA 1.12461002172303 45 0.225192887018299 3 3 0 -5.76518387120929 LTS-035 chr2 70933637 89161322 18227686 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, MIR4436A, MIR4780, PARTICL, MIR5000, MPHOSPH10, SMYD5, SEMA4F, CCT7, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, CYTOR, TEX261, MRPL53, ADD2, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, SMYD1, FBXO41, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, TEX37, EMX1, FABP1, RPIA, EXOC6B, NA NA NA NA NA NA NA NA NA LTS-035 WBP1, VAX2, POLR1A, RAB11FIP5, GGCX, ZNF638, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, FIGLA, NOTO, FOXI3, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, PAIP2B, MAT2A, CD207, REG3A, TPRKB, RNF181, KRCC1, MRPL35, CHMP3, ATP6V1B1, RETSAT, AUP1, PTCD3, MOB1A, THNSL2, NAGK, KDM3A, CYP26B1, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, ANKRD36BP2, RMND5A, REEP1, SPR, TACR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, OR7E91P, ANKRD53, LRRTM4, CAPG, DYSF, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, PRADC1, DUSP11, MCEE, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, SFXN5, EIF2AK3, MRPL19) 0.445451001982314 209 0.0767129524285053 1.0148363189594 10209 0.252548984359532 2 1 1 -6.977818638684 LTS-035 NA NA NA NA LTS-035 chr2 89161323 91809324 2648002 * LOC654342 0.361 1 NA 1.10751664711352 277 1.18311945424705 3 3 0 -5.76906533834757 LTS-035 chr2 91809325 91944161 134837 * LOC654342 0.323076322178442 19 0.0762366659801311 1.22478095619084 79 0.729417697800327 5 4 1 -6.76231436627502 LTS-035 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.3307675791365 8 0.32573101852383 4 NA NA -5.76450025570048 LTS-035 chr2 95537183 95542476 5294 * c(TEKT4, LOC442028) 0.247 1 NA 1.10934508730699 43 0.251948240390962 3 3 0 -5.76460503949477 LTS-035 chr2 95542477 99240764 3698288 * c(MIR3127, ACTR1B, ARID5A, MGAT4A, CNGA3, TRIM43, COX5B, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, UNC50, CNNM4, CNNM3, STARD7-AS1, KCNIP3, INPP4A, ANKRD36, MAL, ASTL, LOC442028, COA5, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.401403216373383 66 0.125241578214876 1.00754696251848 4121 0.256223388948917 2 1 1 -6.7806366118414 LTS-035 chr2 99240765 99485676 244912 * c(MGAT4A, KIAA1211L) 0.484 1 NA 0.964536422187216 203 0.212170399094603 2 2 0 -5.7652264693038 LTS-035 chr2 99485677 113818620 14332944 * c(BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LINC01158, LOC100507334, MIR4772, MIR5696, TXNDC9, MERTK, EDAR, TBC1D8, GPR45, NMS, LYG1, MITD1, FBLN7, TMEM182, TTL, CKAP2L, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, LONRF2, CCDC138, CREG2, LINC00116, FHL2, LYG2, IL36RN, IL36B, IL37, IL36A, SULT1C4, RNF149, LINC01114, LOC285000, PLGLA, RGPD4, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, NA NA NA NA NA NA NA NA NA LTS-035 ZC3H6, SLC9A4, AFF3, LIMS1, FLJ42351, SULT1C3, NPAS2, NPHP1, MRPL30, REV1, LIPT1, MIR4435-2HG, POU3F3, ACOXL, CNOT11, IL36G, RANBP2, SLC5A7, RPL31, ANAPC1, MRPS9, SOWAHC, RGPD3, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, RGPD8, RGPD4-AS1, RFX8, IL1R2, MALL, PDCL3, C2orf49, UXS1, TSGA10, POLR1B, CHCHD5, NCK2, C2orf40, ZC3H8, ST6GAL2, MFSD9, TMEM87B, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CHST10, GCC2, EIF5B) 0.448538776212235 160 0.0519196222040504 1.02821179265395 7732 0.25669481906592 2 1 1 -7.13978676832851 LTS-035 NA NA NA NA LTS-035 chr2 113818621 113819649 1029 * IL36RN NA 0 NA 1.143 1 NA NA NA NA NA LTS-035 chr2 113819650 116602519 2782870 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL36RN, IL1RN, WASH2P, DPP10-AS1, LINC01191, DPP10, FAM138B, PAX8-AS1, PAX8, SLC35F5, IL1F10, DDX11L2) 0.412958235598329 33 0.0871531545526887 1.17320959835137 1041 0.304261363532617 3 2 1 -6.74046551434339 LTS-035 chr2 116602520 116602618 99 * character(0) NA 0 NA 1.022 1 NA NA NA NA NA LTS-035 chr2 116602619 128744580 12141962 * c(RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, MYO7B, INSIG2, POLR2D, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SAP130, TMEM177, AMMECR1L, NIFK, SFT2D3, LINC01101, MARCO, DDX18) 0.448253920702214 76 0.0626275134313705 1.03064428958753 4476 0.268692383678798 2 1 1 -7.0599581221871 LTS-035 chr2 128744581 128757995 13415 * SAP130 0.403 1 NA 1.01998050681812 37 0.207151201107114 2 2 0 -5.7647113564026 LTS-035 chr2 128757996 129075877 317882 * c(UGGT1, SAP130, HS6ST1) 0.329181049991185 9 0.136673983543971 1.04515484827935 433 0.369593196561765 2 2 0 -6.77628985888131 LTS-035 chr2 129075878 130737541 1661664 * c(RAB6C-AS1, LOC389033, RAB6C, HS6ST1) 0.5 1 NA 1.04276137678895 15 0.283265818286506 2 2 0 -5.81204731222021 LTS-035 chr2 130737542 141092157 10354616 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4784, NXPH2, TUBA3E, TUBA3D, LYPD1, ACMSD, FAM168B, LOC150776, WTH3DI, DARS, AMER3, RAB3GAP1, UBXN4, R3HDM1, PTPN18, MED15P9, GPR39, C2orf27A, HNMT, SPOPL, NCKAP5, GPR148, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, FAR2P1, LOC440910, POTEE, ARHGEF4, LRP1B, PLEKHB2, ANKRD30BL, SMPD4, CFC1, YY1P2, POTEI, CFC1B, POTEJ, NA NA NA NA NA NA NA NA NA LTS-035 MZT2A, POTEF, CXCR4, MZT2B, MAP3K19, THSD7B, TMEM163, ZRANB3, RAB6C, CCDC115, CCNT2, CCDC74A, CCDC74B, IMP4) 0.419416257003031 101 0.100032844111272 1.02362518749762 4176 0.376977849264239 2 1 1 -6.81716695016671 LTS-035 NA NA NA NA LTS-035 chr2 141092158 141093164 1007 * LRP1B NA 0 NA 1.093 1 NA NA NA NA NA LTS-035 chr2 141093165 142889274 1796110 * LRP1B 0.383 1 NA 1.16133389674159 414 0.23434864350875 3 3 0 -5.76982395896218 LTS-035 chr2 143642881 165539112 21896232 * c(TANK, LOC100144595, ZEB2-AS1, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, TEX41, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, ARHGAP15, RPRM, SLC4A10, ERMN, RBMS1, NA NA NA NA NA NA NA NA NA LTS-035 IFIH1, MARCH7, TNFAIP6, PABPC1P2, CACNB4, GTDC1, PKP4, TANC1, KYNU, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, ZEB2, CD302) 0.435274773725247 87 0.106020953883606 1.01222341183845 7846 0.241085540959606 2 1 1 -6.96738461372809 LTS-035 NA NA NA NA LTS-035 chr2 165539113 165542581 3469 * COBLL1 NA 0 NA 1.48554937392486 69 0.483141605709905 5 NA NA -5.76444580475032 LTS-035 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.113 1 NA NA NA NA NA LTS-035 chr2 165544234 170175334 4631101 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, NOSTRIN, XIRP2, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.445256124348124 56 0.0707849771280106 1.03122606582006 3306 0.418224640135619 2 1 1 -6.8219368294504 LTS-035 chr2 170175335 170336024 160690 * c(KLHL41, BBS5, LRP2) 0.441 1 NA 1.04417181927642 31 0.212161604058225 2 2 0 -5.77303904029097 LTS-035 chr2 170336025 170366300 30276 * c(KLHL41, BBS5) 0.480736270214784 2 0.015556349186104 1.07628109414122 65 0.261035671191919 2 1 1 -10.5356545213507 LTS-035 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.85 1 NA NA NA NA NA LTS-035 chr2 170366321 179236831 8870511 * c(MIR933, LOC100130691, SP9, MIR1246, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, PHOSPHO2, NA NA NA NA NA NA NA NA NA LTS-035 PDE11A, PDK1, ZAK, ATP5G3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.453046156396682 137 0.0570410078621551 0.982872468258723 6057 0.249868938147346 2 1 1 -6.87352965027799 LTS-035 NA NA NA NA LTS-035 chr2 179236832 179296169 59338 * c(MIR548N, OSBPL6, PRKRA) 0.24 1 NA 1.00026474268016 139 0.209234828183532 2 2 0 -5.7647537882066 LTS-035 chr2 179296170 179549131 252962 * c(MIR548N, TTN-AS1, DFNB59, FKBP7, PLEKHA3, TTN, PRKRA) 0.288147233500895 9 0.0830643993805074 1.00077091811076 2188 0.209282710201418 2 2 0 -6.73855513641889 LTS-035 chr2 179549132 179583158 34027 * TTN 0.48 1 NA 0.982855821818174 259 0.207324497823011 2 2 0 -5.76441440893345 LTS-035 chr2 179583159 183948321 4365163 * c(MIR1258, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, CWC22, SSFA2, TTN, SESTD1) 0.442802311052552 28 0.0413919675002889 0.983909811230752 2621 0.222820521721612 2 1 1 -6.84053975597644 LTS-035 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.169 1 NA NA NA NA NA LTS-035 chr2 183951766 191110904 7159139 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, HIBCH, MSTN, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, C2orf88, ZNF804A, ORMDL1) 0.460758056851133 63 0.0361077992888357 1.06716205324034 3196 0.516044169937263 2 1 1 -7.38006497069073 LTS-035 chr2 191110905 191114267 3363 * HIBCH NA 0 NA 0.795 1 NA NA NA NA NA LTS-035 chr2 191114268 203759422 12645155 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, NA NA NA NA NA NA NA NA NA LTS-035 CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, PGAP1, COQ10B, FZD7, CASP8, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.451810635628304 105 0.0725351941860253 0.961434398016093 7632 0.227237625544467 2 1 1 -6.86551601281381 LTS-035 NA NA NA NA LTS-035 chr2 203759423 203760743 1321 * WDR12 NA 0 NA 1.205 1 NA NA NA NA NA LTS-035 chr2 203760744 219268053 15507310 * c(LOC100130451, MIR548F2, GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, ABI2, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, GPBAR1, EEF1B2, PIKFYVE, LOC200726, ERBB4, IKZF2, FASTKD2, FN1, PNKD, ABCA12, SNORD51, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, ACADL, IDH1, IGFBP2, NA NA NA NA NA NA NA NA NA LTS-035 IGFBP5, CXCR1, CXCR2, CXCR2P1, CATIP, PLEKHM3, C2orf80, DYTN, VWC2L, MIR26B, MAP2, MYL1, ATIC, NDUFS1, SMARCAL1, INO80D, MREG, WDR12, PECR, CYP20A1, PTH2R, MARCH4, ZDBF2, BARD1, CTDSP1, RPE, RPL37A, SNORA41, TMBIM1, LINC00607, RAPH1, NBEAL1, SLC11A1, TNP1, TNS1, DIRC3, XRCC5, FZD5, SPAG16, CARF, KLF7, ADAM23, NRP2, TMEM169, CD28) 0.439581133751226 153 0.0699317490014646 1.02796972263968 9195 0.279953183798613 2 1 1 -7.01880822055957 LTS-035 NA NA NA NA LTS-035 chr2 219268054 219268152 99 * CTDSP1 NA 0 NA 1.079 1 NA NA NA NA NA LTS-035 chr2 219268153 219696867 428715 * c(CYP27A1, STK36, PRKAG3, USP37, CTDSP1, BCS1L, RNF25, VIL1, ZNF142, PLCD4, CNOT9, TTLL4) 0.453127217330368 25 0.0359491770884026 1.09691504429221 1310 0.248806095071628 2 1 1 -7.12738224416193 LTS-035 chr2 219696868 219724503 27636 * character(0) NA 0 NA 0.678 1 NA NA NA NA NA LTS-035 chr2 219724504 242815680 23091177 * c(LOC100129175, PP14571, LOC100286922, MIR1471, BOK-AS1, MIR3131, MIR4268, MIR3132, MIR4269, UBE2F-SCLY, FARSB, ABCB6, MIR4439, MIR4777, MIR2467, MIR4440, MIR4786, MIR4441, MIR5702, MIR5703, ARL4C, RAMP1, SPEG, NMUR1, STK25, COPS8, CAPN10, SP140, CHRND, CHRNG, STK11IP, MOGAT1, AGAP1, TWIST2, COL4A3, COL4A4, COL6A3, DIS3L2, NEU4, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, FBXO36, MTERF4, UBE2F, CRYBA2, OTOS, NA NA NA NA NA NA NA NA NA LTS-035 COPS9, OR6B3, LOC150935, LINC01107, LOC151174, CCDC140, SLC23A3, LINC00608, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, DAW1, C2orf57, DES, DTYMK, AGXT, TIGD1, LOC200772, EPHA4, ACSL3, PASK, ATG4B, OBSL1, DNPEP, SH3BP4, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, SNED1, GIGYF2, TRAF3IP1, GBX2, CNPPD1, GPC1, RTP5, DUSP28, GPR35, GMPPA, HDLBP, AGFG1, DNAJB2, HTR2B, ESPNL, SP110, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ECEL1P2, SPATA3-AS1, IHH, INHA, INPP5D, IRS1, RBM44, AQP12A, KCNJ13, KLHL30, RESP18, C2orf82, OR6B2, ASB18, FLJ43879, MIR149, MIR153-1, DNAJB3, NCL, NDUFA10, SEPT2, NEU2, NPPC, MIR375, ANO7, PAX3, PRLH, THAP4, ANKMY1, PDCD1, PDE6D, SCLY, ASB1, CAB39, SERPINE2, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, KIF1A, FEV, PID1, ATG16L1, PPP1R7, ANKZF1, USP40, HJURP, HES6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ASIC4, DOCK10, C2orf83, MFF, ACKR3, PSMD1, RNPEPL1, PTMA, WDFY1, NYAP2, PTPRN, SNORD20, SAG, CCL20, GAL3ST2, RAB17, LOC643387, PRR21, LOC646736, PRSS56, COPS7B, SLC4A3, MRPL44, AQP12B, SNORA75, LOC654841, BOK, SP100, SPP2, SCARNA6, SCARNA5, TUBA4A, D2HGDH, WNT6, SCG2, TRPM8, ATG9A, MLPH, FAM134A, GLB1L, CHPF, IQCA1, NHEJ1, FAM124B, TM4SF20, C2orf54, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ILKAP, ITM2C, RHBDD1, ING5, CUL3, MGC16025, DGKD, STK16, PER2, CDK5R2, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2, HDAC4, FARP2) 0.442223259191368 385 0.0817343995334863 1.00003147851022 18661 0.358881664655807 2 1 1 -6.80306471863443 LTS-035 NA NA NA NA LTS-035 chr2 242815681 243037218 221538 * LOC728323 NA 0 NA 1.01743847921765 43 0.214445712139808 2 NA NA -5.76848958166589 LTS-035 chr3 239351 361508 122158 * CHL1 0.397 1 NA 1.02721852254978 9 0.549083883492414 2 2 0 -5.76495047624564 LTS-035 chr3 361509 4461767 4100259 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, TRNT1, CRBN, LRRN1, SETMAR) 0.400024996121058 23 0.132351878576943 0.965578149774337 942 0.327859468606464 2 1 1 -6.75961910530925 LTS-035 chr3 4461768 4461772 5 * SUMF1 NA 0 NA 0.858 1 NA NA NA NA NA LTS-035 chr3 4461773 5255126 793354 * c(EGOT, BHLHE40-AS1, SUMF1, ITPR1, ARL8B, BHLHE40, EDEM1) 0.457757235139104 10 0.0420434959958797 0.833374020762922 656 0.197109399985755 2 1 1 -7.37827784898947 LTS-035 chr3 5255127 10004428 4749302 * c(LMCD1-AS1, SRGAP3-AS3, ARPC4-TTLL3, MIR4790, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, LHFPL4, THUMPD3-AS1, OGG1, OXTR, SSUH2, SETD5, RAD18, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1, CAV3, EDEM1, SRGAP3) 0.427429684855073 64 0.0895453186230391 0.975557383297543 2686 0.247427088305109 2 1 1 -6.7343260448136 LTS-035 chr3 10004429 10369215 364787 * c(GHRLOS, FANCD2OS, CIDECP, FANCD2, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, VHL, LINC00852, TATDN2) 0.387557602079258 29 0.113057692670252 0.85390093652332 840 0.25943530130792 1 1 0 -6.77761171232825 LTS-035 chr3 10369216 15062428 4693213 * c(MIR885, MKRN2OS, FGD5P1, FGD5-AS1, SLC6A1-AS1, ATG7, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00606, LINC00620, HRH1, TPRXL, ATP2B2, CCDC174, PPARG, TMEM40, RAF1, RPL32, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, VGLL4, IQSEC1) 0.420489176200483 54 0.0927677155944016 0.931164488038128 3481 0.227156841716156 2 1 1 -6.87340180320287 LTS-035 chr3 15062429 28579634 13517206 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, RBSN, AZI2, MRPS25, THRB-AS1, BTD, MIR563, THRB, TOP2B, NR2C2, UBE2E1, UBE2E2, ZNF385D, COLQ, EOMES, NA NA NA NA NA NA NA NA NA LTS-035 EAF1, KAT2B, OXNAD1, SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.428381653697855 93 0.0967565710150768 0.872722049010479 4630 0.217284270206135 2 1 1 -8.44399848768283 LTS-035 NA NA NA NA LTS-035 chr3 29322426 42788950 13466525 * c(ACVR2B-AS1, PDCD6IP, CCDC13-AS1, OSBPL10-AS1, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, CCR4, CCR8, LYZL4, KLHL40, TRIM71, CTNNB1, CMTM8, CCDC13, CX3CR1, XIRP1, TTC21A, STT3B, TRAK1, CLASP2, GPD1L, ZNF620, FBXL2, CNOT10, MYRIP, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, NA NA NA NA NA NA NA NA NA LTS-035 DYNC1LI1, SS18L2, PLCD1, CMTM6, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, TMPPE, CSRNP1, GORASP1, STAC, TGFBR2, UBP1, VIPR1, DCLK3, CCK, RPL14, SEC22C, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.417005897557025 145 0.0911316581588086 0.925842745529675 8596 0.552816616518225 2 1 1 -6.82185843591642 LTS-035 NA NA NA NA LTS-035 chr3 42788951 42791247 2297 * CCDC13 NA 0 NA 0.682 1 NA NA NA NA NA LTS-035 chr3 42791248 46714908 3923661 * c(LOC100132146, KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, ACKR2, TMEM42, CCDC13, CYP8B1, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, HIGD1A, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, NA NA NA NA NA NA NA NA NA LTS-035 POMGNT2, LIMD1, CCRL2, ZNF502) 0.439912704170388 95 0.0479329926096329 0.870309118293729 4551 0.198531354718707 2 1 1 -7.5299095988807 LTS-035 NA NA NA NA LTS-035 chr3 46714909 47103862 388954 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.442768467238299 28 0.0490454249008376 0.974179306505193 914 0.313195944774774 2 1 1 -6.80916023653064 LTS-035 chr3 47103863 47552780 448918 * c(SCAP, KLHL18, PTPN23, KIF9-AS1, SETD2, ELP6, KIF9) 0.337961065894011 12 0.0410084987496125 1.13233207760597 753 0.269969023991602 4 3 1 -6.95633752265441 LTS-035 chr3 47552781 47554990 2210 * ELP6 NA 0 NA 0.759 1 NA NA NA NA NA LTS-035 chr3 47554991 58625923 11070933 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, FAM3D, IQCF1, GLYCTK, PPM1M, LSMEM2, ASB14, DAG1, DNASE1L3, DOCK3, NA NA NA NA NA NA NA NA NA LTS-035 DUSP7, CELSR3, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, DHX30, LAMB2P1, RAD54L2, STAB1, FLNB, FAM208A, NAT6, ABHD14A, POC1A, NDUFAF3, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, GPX1, SPCS1, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.432259378617375 290 0.0781465130933589 0.900572385304275 17489 0.207512741014566 2 1 1 -7.67480606161557 LTS-035 NA NA NA NA LTS-035 chr3 58625924 67059743 8433820 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.425346309133892 40 0.0521245057776484 0.977261446111785 2371 0.273415363421141 2 1 1 -6.73353118153045 LTS-035 chr3 67059744 74312218 7252475 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.443777372118383 56 0.0952372567062652 0.901445596407531 2170 0.258742492605885 2 1 1 -7.17748600815126 LTS-035 chr3 74312219 74570331 258113 * CNTN3 NA 0 NA 0.980157506738609 137 0.210350318630314 2 NA NA -5.7644103546381 LTS-035 chr3 75263493 75679988 416496 * c(MIR1324, FAM86DP) 0.313 1 NA 1.47692407976073 7 0.426539341120851 4 4 0 -5.77050819805785 LTS-035 chr3 75679989 75785509 105521 * c(ZNF717, MIR1324) 0.336629325146821 83 0.104097918934136 1.52252992603988 159 0.738493194654542 7 5 2 -6.74704309115555 LTS-035 chr3 75785510 75785525 16 * ZNF717 NA 0 NA 0.743 1 NA NA NA NA NA LTS-035 chr3 75785526 75986695 201170 * c(ZNF717, ROBO2) 0.336243909969317 99 0.1061933200947 1.17964534089509 185 0.489091341174377 4 3 1 -6.76064368245917 LTS-035 chr3 75986696 75986794 99 * ROBO2 0.398 1 NA 1.17679896151446 2 0.248901586977665 3 3 0 -5.76441014555151 LTS-035 chr3 75986795 88103776 12116982 * c(MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ROBO1, ROBO2, CGGBP1) 0.437989525230046 22 0.0625923560053704 1.0809961511575 1158 0.282751653777388 2 1 1 -7.52693845661849 LTS-035 chr3 88103777 90283666 2179890 * c(EPHA3, C3orf38, ZNF654, CGGBP1) NA 0 NA 1.0108750984813 463 0.25863970124205 2 NA NA -5.78327283688365 LTS-035 chr3 93591838 93593119 1282 * PROS1 0.477 1 NA 1.01404204751544 25 0.230246230515652 2 2 0 -5.76442712911225 LTS-035 chr3 93593120 122598293 29005174 * c(ZBTB11-AS1, ZBTB20-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, POLQ, HHLA2, FSTL1, FILIP1L, LRRC58, COL8A1, CCDC58, ZPLD1, CD200R1, CRYBG3, DCBLD2, FAM172BP, CPOX, ADPRH, CSTA, DTX3L, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, IGSF11, C3orf30, PARP15, GPR156, DRD3, ARL13B, DHFR2, GABRR3, TIGIT, USF3, NA NA NA NA NA NA NA NA NA LTS-035 ALCAM, MYH15, ZDHHC23, LINC00879, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, OR5K1, OR5H1, FAM162A, ZBTB11, MORC1, GOLGB1, GPR15, TUSC7, LINC00636, EPHA6, RABL3, SLC9C1, PDCL3P4, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, DUBR, TMPRSS7, CD200R1L, LNP1, KPNA1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, LSAMP, MIR198, STX19, CD200, NDUFB4, ARGFX, TRAT1, IMPG2, TIMMDC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, TMEM39A, ABHD10, TBC1D23, CFAP44, EAF2, PROS1, CLDND1, NIT2, POGLUT1, BBX, PCNP, SENP7, ARHGAP31, CCDC191, KIAA1524, RPL24, NSUN3, POPDC2, NFKBIZ, ATG3, TMEM30CP, SLC15A2, LINC00488, MIR548A3, MIR567, MIR568, UPK1B, ZNF80, OR5H6, OR5H2, ZBED2, CEP97, HSPBAP1, C3orf52, QTRT2, NAA50, OR5AC2, PARP9, ARL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CMSS1, CASR, RETNLB, CCDC54, MINA, ADGRG7, DIRC2, CBLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, NXPE3, CD80, CD86, STXBP5L, CD47, GUCA1C, IQCB1, DZIP3, TOMM70) 0.441383887758384 289 0.0651312966886346 1.05434491384879 14470 0.309215009275894 2 1 1 -7.61455973853716 LTS-035 NA NA NA NA LTS-035 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 1.228 1 NA NA NA NA NA LTS-035 chr3 122598385 141011208 18412824 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, NA NA NA NA NA NA NA NA NA LTS-035 COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, MUC13, HMCES, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, LOC90246, EFCAB12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SPSB4, PXYLP1, COPB2) 0.445311611047957 237 0.0885607404879548 1.09216219375925 13506 0.301593249350915 3 2 1 -7.52333227842475 LTS-035 NA NA NA NA LTS-035 chr3 141011209 166960278 25949070 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, LOC101243545, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, AADACP1, C3orf58, SLITRK3, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, TIPARP, ARHGEF26, PCOLCE2, NA NA NA NA NA NA NA NA NA LTS-035 SERP1, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, IFT80, PTX3, BCHE, RAP2B, RARRES1, RASA2, TMEM14EP, LOC646903, PA2G4P4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LINC01192, SHOX2, MFSD1, SI, SIAH2, P2RY12, IQCJ, HLTF, SSR3, SCARNA7, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, ARL14, EIF2A, ZIC4, HPS3, GFM1, B3GALNT1, GMPS, SLC33A1, PXYLP1, CHST2, RNF7, TSC22D2, P2RY14) 0.45035841252383 173 0.060544732823517 1.05479122090962 10442 0.33597954722822 2 1 1 -7.50263330077392 LTS-035 NA NA NA NA LTS-035 chr3 166960279 166969933 9655 * ZBBX 0 1 NA 1.23212699796549 9 0.68352779753277 3 3 0 -5.76443258625464 LTS-035 chr3 166969934 167813764 843831 * c(PDCD10, WDR49, GOLIM4, SERPINI1, SERPINI2, LINC01330, ZBBX) 0.315624610295061 4 0.215173379704213 1.0838016792826 487 0.312879055133007 2 2 0 -6.79064100874844 LTS-035 chr3 167813765 168269567 455803 * EGFEM1P NA 0 NA 1.81 1 NA NA NA NA NA LTS-035 chr3 168269568 168833266 563699 * c(MECOM, MIR551B, EGFEM1P) 0.476 1 NA 1.5706155816174 107 0.27840057994384 5 5 0 -5.76466049245416 LTS-035 chr3 168833267 169555614 722348 * c(LRRC34, MECOM, LRRIQ4, MYNN, TERC, ACTRT3) 0.35892933567524 4 0.216642562761799 1.17781943214052 294 0.29213282870615 3 2 1 -6.75863689392224 LTS-035 chr3 169555615 169557842 2228 * LRRC31 0.459 1 NA 1.2123580056146 21 0.351770589474231 3 3 0 -5.76441764938274 LTS-035 chr3 169557843 185538873 15981031 * c(LOC100128164, MIR1224, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, ALG3, KCNMB2, IGF2BP2, AP2M1, CLCN2, DNAJC19, FAM131A, TTC14, HTR3C, DVL3, ECT2, EHHADH, EIF4G1, LIPH, HTR3D, RPL22L1, EPHB3, NLGN1, TNIK, MCF2L2, ATP11B, VPS8, NAALADL2, GHSR, GPR160, LAMP3, KCNMB3, HTR3E, C3orf70, CCDC39, EHHADH-AS1, SAMD7, SOX2-OT, TMEM212, FLJ46066, NDUFB5, CLDN11, ZNF639, PEX5L, PIK3CA, NA NA NA NA NA NA NA NA NA LTS-035 PLD1, DCUN1D1, POLR2H, KLHL24, ABCF3, PARL, MFN1, YEATS2, PRKCI, EIF5A2, MCCC1, PSMD2, MRPL47, NCEH1, SLC7A14, SENP2, GNB4, MAGEF1, ZMAT3, IGF2BP2-AS1, FNDC3B, SKIL, SLC2A2, SOX2, SNORD66, MIR569, THPO, SEC62, TBL1XR1, LRRC31, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTL6A, CHRD, TNFSF10, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, CAMK2N2, ECE2) 0.431244207856226 151 0.0998298110284594 1.12516928384539 9715 0.282617685383329 3 2 1 -7.04544510993884 LTS-035 NA NA NA NA LTS-035 chr3 185538874 195306436 9767563 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, IGF2BP2, CLDN16, RPL39L, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, AHSG, EIF4A2, ETV5, FGF12, ACAP2, LOC253573, UTS2B, FETUB, GP5, TPRG1, HRG, HES1, LPP-AS2, NMRAL1P1, RTP2, OSTN, ATP13A5, APOD, IL1RAP, KNG1, FLJ42393, LINC00884, LPP, NA NA NA NA NA NA NA NA NA LTS-035 OPA1, DNAJB11, PPP1R2, TBCCD1, P3H2, LSG1, MASP1, HRASLS, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, TRA2B, GMNC, LOC647323, ST6GAL1, SST, SNORA81, ATP13A3, ATP13A4, MGC2889, TP63, CLDN1, TMEM44, ADIPOQ) 0.43711374920671 174 0.0855192779856229 1.08806487103975 5242 0.366977358526863 3 2 1 -7.10079012979711 LTS-035 NA NA NA NA LTS-035 chr3 195306437 195345045 38609 * APOD NA 0 NA 2.303 1 NA NA NA NA NA LTS-035 chr3 195345046 195345206 161 * character(0) 0.451 1 NA 1.73977520131193 7 0.262621853803597 6 6 0 -5.76441098989241 LTS-035 chr3 195345207 195345354 148 * character(0) 0.233 1 NA 1.73986469700123 3 0.282703613937518 6 6 0 -5.76441080992618 LTS-035 chr3 195345355 195453067 107713 * c(MUC20, MIR570, SDHAP2) 0.328793328218026 13 0.0975905890797011 1.53241536394981 111 0.496703688301339 5 4 1 -6.75696016375067 LTS-035 chr3 195453068 195453157 90 * MUC20 NA 0 NA 2.295 1 NA NA NA NA NA LTS-035 chr3 195453158 195475926 22769 * c(MUC20, MUC4) 0.465365190474701 2 0.0261629509039022 2.38966560233283 62 2.1507360824743 19 10 9 -7.88677679504724 LTS-035 chr3 195475927 195475989 63 * MUC4 0.488 1 NA 1.139 1 NA NA NA NA NA LTS-035 chr3 195475990 195710993 235004 * c(TNK2, SDHAP1, MUC4) 0.26798901952005 11 0.113825384610895 1.10615227602219 381 0.302428109388417 3 3 0 -6.7641633468596 LTS-035 chr3 195710994 195937977 226984 * c(ZDHHC19, SDHAP1, LINC00885, TFRC) 0.477 1 NA 1.01299990320092 181 0.174986713342847 2 2 0 -5.76931115905893 LTS-035 chr3 195937978 197579466 1641489 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, BDH1, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.438236795125754 55 0.0517535795538144 1.01839067650636 2255 0.239582966586363 2 1 1 -6.79623161099915 LTS-035 chr3 197579467 197770512 191046 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.03679085218975 371 0.197157883149599 2 NA NA -5.7737834065684 LTS-035 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.234 1 NA 0.830545832765892 13 0.177444357475801 1 1 0 -5.76496960525988 LTS-035 chr4 60336 3372141 3311806 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, NA NA NA NA NA NA NA NA NA LTS-035 TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.345962376650271 128 0.0848151286808527 0.776080197494137 5529 0.203073439667434 1 1 0 -6.77512739111852 LTS-035 NA NA NA NA LTS-035 chr4 3372142 25760680 22388539 * c(LOC100129931, LOC100133461, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, OTOP1, CRMP1, ADRA2C, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, NA NA NA NA NA NA NA NA NA LTS-035 CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, LOC285484, DOK7, LINC00955, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HGFAC, HMX1, FAM86EP, KCNIP4-IT1, USP17L6P, USP17L9P, LRPAP1, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, RGS12, AFAP1, S100P, NCAPG, DEFB131, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.339720629826405 212 0.0775097574286405 0.821515006382881 9269 0.283055014721152 1 1 0 -7.25263160365918 LTS-035 NA NA NA NA LTS-035 chr4 25760681 25766965 6285 * SEL1L3 NA 0 NA 0.68 1 NA NA NA NA NA LTS-035 chr4 25766966 48988450 23221485 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, PTTG2, LIAS, ARAP2, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, NA NA NA NA NA NA NA NA NA LTS-035 PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, ATP10D, NWD2, SLAIN2, STIM2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, TLR10, CCKAR, PHOX2B, FAM114A1) 0.336833195876733 166 0.0865417866260028 0.788596026997328 8264 0.202209763445663 1 1 0 -6.86175264222817 LTS-035 NA NA NA NA LTS-035 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.748109235670075 85 0.132658746930818 1 NA NA -5.76863814024035 LTS-035 chr4 52709193 53728524 1019332 * c(ERVMER34-1, MIR4449, SPATA18, LINC01618, DCUN1D4, LRRC66, DANCR, SGCB, USP46, RASL11B, SNORA26) 0.465 1 NA 0.829768429905854 623 0.20938481436139 1 1 0 -5.81944116201567 LTS-035 chr4 53728525 68906584 15178060 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, SCFD2, GSX2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, RASL11B, SPINK2, SRP72, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.337955632724804 82 0.0946209955101293 0.803388916031425 3962 0.210434771651085 1 1 0 -6.98307283863109 LTS-035 chr4 68906585 68907460 876 * UBA6-AS1 NA 0 NA 0.225372796110849 40 0.193344643789403 0 NA NA -5.77684852989513 LTS-035 chr4 68907461 89911265 21003805 * c(FAM47E, FTLP10, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, TMPRSS11B, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, NA NA NA NA NA NA NA NA NA LTS-035 C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HERC5, PLAC8, PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, UBA6-AS1, LOC550113, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, UGT2B17, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.350897874381998 258 0.0747276017294135 0.804515759271457 13113 0.218093739814003 1 1 0 -7.02817855389771 LTS-035 NA NA NA NA LTS-035 chr4 89911266 99214750 9303485 * c(STPG2-AS1, FAM13A, PDLIM5, TIGD2, MMRN1, HPGDS, GPRIN3, STPG2, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, RAP1GDS1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.335452599794114 57 0.0797283019405645 0.876303269608719 1832 1.00889275373227 1 1 0 -6.90828023759116 LTS-035 chr4 99214751 99218029 3279 * RAP1GDS1 NA 0 NA 1.184 1 NA NA NA NA NA LTS-035 chr4 99218030 99428894 210865 * c(TSPAN5, RAP1GDS1) 0.262 1 NA 1.04240554751895 180 0.18944981270302 2 2 0 -5.77785334246299 LTS-035 chr4 99428895 99579235 150341 * TSPAN5 NA 0 NA 0.732 1 NA NA NA NA NA LTS-035 chr4 99579236 100269045 689810 * c(MIR3684, LOC100507053, TSPAN5, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, EIF4E, METAP1, PCNAP1) 0.346168320899227 46 0.0551867974129289 0.808663839244115 790 0.476368619108435 1 1 0 -6.83071433843933 LTS-035 chr4 100269046 100333556 64511 * c(ADH1C, ADH7) 0.277 1 NA 0.872997374606076 11 0.161139916616811 1 1 0 -5.78368073603436 LTS-035 chr4 100333557 100461898 128342 * c(ADH7, C4orf17) 0.352180678753993 3 0.0466797600679352 0.840662495336932 113 0.196304437158309 1 1 0 -6.81547015264469 LTS-035 chr4 100461899 119982411 19520513 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, SYNPO2, EGF, ENPEP, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, ANK2, H2AFZ, HADH, CFI, LRIT3, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, METTL14, OSTC, RPL34, NA NA NA NA NA NA NA NA NA LTS-035 NEUROG2, SLC39A8, LEF1-AS1, CEP170P1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, C4orf17, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, SEC24D) 0.299875503633381 194 0.0637148432130218 0.926227564243735 8131 0.255245831134484 2 2 0 -7.25909293509558 LTS-035 NA NA NA NA LTS-035 chr4 119982412 119991176 8765 * character(0) NA 0 NA 0.542 1 NA NA NA NA NA LTS-035 chr4 119991177 120194782 203606 * c(MYOZ2, USP53) 0.432158597175327 6 0.037866431924155 0.587856410449192 157 0.196664400053927 0 0 0 -6.75339009130534 LTS-035 chr4 120194783 120212288 17506 * USP53 NA 0 NA 1.775 1 NA NA NA NA NA LTS-035 chr4 120212289 129770312 9558024 * c(PP12613, MIR2054, SPRY1, PGRMC2, PLK4, PRDM5, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, FABP2, FGF2, HSPA4L, MFSD8, INTU, LINC01091, ANXA5, IL2, LINC01061, C4orf3, MAD2L1, EXOSC9, USP53, LARP1B, BBS7, ANKRD50, IL21, LOC645513, TRPC3, CETN4P, NDNF, FAT4, TNIP3, JADE1, ABHD18, SLC25A31, QRFPR, KIAA1109, PDE5A, CCNA2) 0.326649692967175 88 0.0514994077838752 0.91033962653737 3753 0.22280184192594 2 2 0 -7.52155545620126 LTS-035 chr4 129770313 129958518 188206 * c(SCLT1, JADE1) 0.442465018553064 4 0.0290172362570938 1.21299653041566 248 0.304286396397191 4 2 2 -6.95894743801749 LTS-035 chr4 129958519 142655171 12696653 * c(SCOC-AS1, LINC00499, CLGN, SCLT1, C4orf33, PABPC4L, MGAT4D, ELF2, TBC1D9, SLC7A11, ELMOD2, NOCT, ZNF330, IL15, MGST2, NDUFC1, PCDH18, MAML3, RNF150, PCDH10, SCOC, SLC7A11-AS1, LINC00616, TNRC18P1, UCP1, NAA15, SETD7, RAB33B, MGARP) 0.299426564955411 44 0.0517337875861867 0.911587206986894 2305 0.288835659670435 2 2 0 -7.18024866388605 LTS-035 chr4 142655172 142944323 289152 * character(0) NA 0 NA 0.463 1 NA NA NA NA NA LTS-035 chr4 142944324 142951500 7177 * INPP4B 0.485265408445173 3 0.0146401275039985 0.589810257973771 142 0.138658091639058 0 0 0 -11.1455256335112 LTS-035 chr4 142951501 143003165 51665 * INPP4B NA 0 NA 0.941 1 NA NA NA NA NA LTS-035 chr4 143003166 164245405 21242240 * c(MIR3140, MIR3688-1, LINC01095, MIR4799, MIR3688-2, ANAPC10, MAB21L2, LSM6, CTSO, ZNF827, SH3D19, C4orf45, DCLK2, FREM3, MMAA, RBM46, EDNRA, C4orf46, TIGD4, TMEM154, ETFDH, FGA, FGB, FGG, KIAA0922, TRIM2, GAB1, ARFIP1, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, LOC340017, PRSS48, SMAD1, NR3C2, GUSBP5, NPY1R, NPY2R, FAM198B, ASIC5, GATB, PLRG1, DKFZP434I0714, POU4F2, OTUD4, NA NA NA NA NA NA NA NA NA LTS-035 DCHS2, PPID, FBXW7, TMEM144, TMEM184C, PDGFC, FSTL5, FNIP2, RXFP1, ABCE1, RPS3A, SFRP2, HHIP, HHIP-AS1, C4orf51, TDO2, TLR2, FAM160A1, ARHGAP10, MAP9, TTC29, MND1, SLC10A7, USP38, SMARCA5, FHDC1, INPP4B, SNORD73A, PRMT9, LRAT, NAF1, RAPGEF2, LRBA) 0.314848487452509 115 0.0677785328806312 0.923419063685458 8265 0.325415551475998 2 2 0 -7.18136458589071 LTS-035 NA NA NA NA LTS-035 chr4 164245406 165837220 1591815 * c(LINC01207, APELA, ANP32C, NPY1R, NPY5R, MARCH1, TMA16, TKTL2) NA 0 NA 0.896811768665932 389 0.20899037267283 2 NA NA -5.93139539256534 LTS-035 chr4 165837221 165878038 40818 * TRIM61 NA 0 NA 0.709 1 NA NA NA NA NA LTS-035 chr4 165878039 166000263 122225 * c(FAM218A, TRIM60, TMEM192, TRIM61) 0.432 1 NA 0.703234760150119 181 0.165103551969448 1 1 0 -5.7924652205479 LTS-035 chr4 166000264 184241686 18241423 * c(MIR1305, MIR4276, LOC100506085, LOC100506122, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, CPE, ASB5, WWC2-AS2, DCTD, AGA, TMEM192, PALLD, FBXO8, GK3P, GPM6A, LINC01098, HMGB2, HPGD, FAM92A1P2, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, CLDN22, HPF1, NEIL3, DDX60, TENM3, SH3RF1, SPCS3, MSMO1, MIR578, TLL1, LINC00290, VEGFC, HAND2-AS1, GLRA3, WWC2, CEP44, CBR4, SAP30, LOC90768, DDX60L, HAND2, NA NA NA NA NA NA NA NA NA LTS-035 MFAP3L) 0.379678045216838 101 0.0954306103204764 0.718695148383631 4525 0.280124167893433 1 1 0 -7.53351280259173 LTS-035 NA NA NA NA LTS-035 chr4 184241687 184241785 99 * c(CLDN22, WWC2) NA 0 NA 0.654 1 NA NA NA NA NA LTS-035 chr4 184241786 186545296 2303511 * c(CLDN24, MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, PDLIM3, SLC25A4, ANKRD37, ING2, IRF2, LOC389247, HELT, C4orf47, CLDN22, UFSP2, CDKN2AIP, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, WWC2, CASP3, SNX25, SORBS2) 0.418905476448748 32 0.0538123606738296 0.676244929290665 1874 0.1841915213889 0 0 0 -7.60508525766357 LTS-035 chr4 186545297 186545395 99 * SORBS2 NA 0 NA 0.762 1 NA NA NA NA NA LTS-035 chr4 186545396 190945944 4400549 * c(ZFP42, TRIML2, F11, FAT1, FRG1, FAM149A, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A, FLJ38576, TLR3, SORBS2) 0.370469444097134 47 0.0788689354129558 0.749866562508189 1255 0.179277232412883 1 1 0 -6.85074230531449 LTS-035 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.801321280859975 23 0.314638892082761 1 NA NA -5.76458197183256 LTS-035 chr5 140347 163266 22920 * PLEKHG4B 0.415 1 NA 0.847066258936854 69 0.154566340524671 1 1 0 -5.76844270752005 LTS-035 chr5 163267 712144 548878 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.383979465330821 75 0.0740387213034656 0.901492482988318 1033 0.233480559901966 1 1 0 -6.88584290854473 LTS-035 chr5 712145 716871 4727 * character(0) NA 0 NA 1.192 1 NA NA NA NA NA LTS-035 chr5 716872 796495 79624 * ZDHHC11 0.375458136458473 11 0.06971669944725 1.44933116173868 87 0.731515350556254 6 4 2 -6.74319612856842 LTS-035 chr5 796496 801170 4675 * ZDHHC11 NA 0 NA 0.829 1 NA NA NA NA NA LTS-035 chr5 801171 39122504 38321334 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAP, UGT3A2, ADAMTS16, NA NA NA NA NA NA NA NA NA LTS-035 DNAH5, RANBP3L, CCT5, PDZD2, FBXL7, ICE1, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, GDNF, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, IL7R, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, ANKH, PRLR, PRDM9, RAD1, GOLPH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LINC01021, NIPBL-AS1, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155) 0.432454249799949 271 0.0687641004959359 0.931101630914997 12560 0.231570134630742 2 1 1 -7.6909617218032 LTS-035 NA NA NA NA LTS-035 chr5 39122505 39124285 1781 * FYB NA 0 NA 0.632 1 NA NA NA NA NA LTS-035 chr5 39124286 41941479 2817194 * c(LOC100506548, MROH2B, DAB2, TTC33, FYB, FBXO4, C5orf51, PLCXD3, OXCT1, PRKAA1, PTGER4, RPL37, SNORD72, C6, C7, C9, CARD6) 0.429744092727464 25 0.0399892902329278 0.877390096807355 1692 0.237200691182869 2 1 1 -7.08691909472846 LTS-035 chr5 41941480 41941577 98 * FBXO4 NA 0 NA 1.635 1 NA NA NA NA NA LTS-035 chr5 41941578 44304435 2362858 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, LOC153684, NIM1K, NNT, FBXO4, GHR, HMGCS1, C5orf34, ANXA2R, CCL28, SELENOP, TMEM267, LOC648987, ZNF131) 0.364182564314369 20 0.0978308287434568 1.30852382889414 977 0.371095693533463 4 3 1 -6.77106675775657 LTS-035 chr5 44304436 45696278 1391843 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.21293581598632 197 0.262996554172245 3 NA NA -5.77310617752618 LTS-035 chr5 49692017 49737223 45207 * EMB 0.372 1 NA 0.833117144351818 99 0.210170970737723 1 1 0 -5.76717560079186 LTS-035 chr5 49737224 69373289 19636066 * c(LRRC70, FAM159B, NA, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, NA NA NA NA NA NA NA NA NA LTS-035 MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, GUSBP3, SMN1, SMN2, TAF9, MIR449B, MIR581, GTF2H2C, PARP8, ANKRD55, ELOVL7, TRAPPC13, SERF1A, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.425137495142923 168 0.076590929724809 0.893301438051888 8255 0.337787098319557 2 1 1 -7.50796627623242 LTS-035 NA NA NA NA LTS-035 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.287 1 NA NA NA NA NA LTS-035 chr5 69717474 70366471 648998 * c(GUSBP9, SMA4, SMA5, GTF2H2, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) 0.438775502303889 2 0.0289913780286485 0.560846351834988 67 0.285533529822853 0 0 0 -6.86390496922186 LTS-035 chr5 70366472 70369072 2601 * c(GUSBP9, NAIP) NA 0 NA 1.62 1 NA NA NA NA NA LTS-035 chr5 70369073 71015898 646826 * c(GUSBP9, NAIP, PMCHL2, BDP1, MCCC2, LOC647859, CARTPT) 0.334419347260322 16 0.0955456042944938 1.14002453517118 459 0.431903850368267 4 3 1 -6.83173569191215 LTS-035 chr5 71015899 71016321 423 * CARTPT NA 0 NA 0.875 1 NA NA NA NA NA LTS-035 chr5 71016322 90666313 19649992 * c(CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-035 NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, GCNT4, POLK, AGGF1, WDR41, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, ARHGEF28, LOC644936, LINC00461, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.425729271223157 222 0.079597974422106 0.914851463479578 9425 0.349821882619437 2 1 1 -7.15644393919324 LTS-035 NA NA NA NA LTS-035 chr5 90666314 90666440 127 * ARRDC3 NA 0 NA 0.78 1 NA NA NA NA NA LTS-035 chr5 90666441 96367679 5701239 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.436943866810316 55 0.0519177476904818 0.847036247133004 2589 0.207455183985722 2 1 1 -8.10260623371846 LTS-035 chr5 96367680 96371142 3463 * character(0) NA 0 NA 1.21881741948583 70 0.404008723231572 3 NA NA -5.76442291831705 LTS-035 chr5 96371143 118175995 21804853 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, DTWD2, RGMB, APC, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, NA NA NA NA NA NA NA NA NA LTS-035 LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.420414736835696 159 0.0696206674615489 0.904549325194327 6052 0.333406537990394 2 1 1 -7.40827134596203 LTS-035 NA NA NA NA LTS-035 chr5 118175996 118176001 6 * DTWD2 NA 0 NA 1.18 1 NA NA NA NA NA LTS-035 chr5 118176002 128369276 10193275 * c(LOC100505841, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, DMXL1, FBN2, TNFAIP8, DTWD2, SLC27A6, SNX24, HSD17B4, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.425004318003751 81 0.0780464605219224 1.14235914172597 3590 0.314993581804602 3 2 1 -6.84394077585403 LTS-035 chr5 128369277 128430291 61015 * SLC27A6 NA 0 NA 1.074 1 NA NA NA NA NA LTS-035 chr5 128430292 132442137 4011846 * c(KIAA1024L, MIR3936, MIR4633, MIR4460, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, CSF2, ADAMTS19, SEPT8, ACSL6, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CHSY3, IL3, IL4, IL5, IL13, IRF1, C5orf56, ISOC1, RAPGEF6, ZCCHC10, LOC553103, CDC42SE2, CCNI2, SLC22A4, SLC22A5, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0.427771513061351 84 0.0839508776402554 1.06320146479145 3171 0.400192403642583 2 1 1 -6.83198524292084 LTS-035 chr5 132442138 132532162 90025 * FSTL4 NA 0 NA 1.5 1 NA NA NA NA NA LTS-035 chr5 132532163 137087498 4555336 * c(VTRNA2-1, MIR874, MIR1289-2, MIR3661, MIR4461, C5orf66, SEC24A, HNRNPA0, C5orf24, DCANP1, SLC25A48, FSTL4, JADE2, FBXL21, KLHL3, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, SAR1B, CDKL3, PITX1, PPP2CA, C5orf15, TRPC7, SKP1, SPOCK1, TCF7, TGFBI, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, MYOT, CXCL14, H2AFY, SMAD5-AS1, DDX46) 0.425880432054196 56 0.0678798020950823 1.15683667328099 3013 0.360636445882339 3 2 1 -6.8049395117397 LTS-035 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 1.034 1 NA NA NA NA NA LTS-035 chr5 137087505 140553623 3466119 * c(SRA1, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, NA NA NA NA NA NA NA NA NA LTS-035 PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.378541685832117 45 0.146885466959943 1.08882259163955 5298 0.272899367637935 3 2 1 -6.92887426080785 LTS-035 NA NA NA NA LTS-035 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 1.963 1 NA NA NA NA NA LTS-035 chr5 140554692 140560032 5341 * c(PCDHB8, PCDHB7) NA 0 NA 2.35473025745627 67 0.469817350500488 9 NA NA -5.76441267453753 LTS-035 chr5 140560033 140560048 16 * PCDHB8 NA 0 NA 1.495 1 NA NA NA NA NA LTS-035 chr5 140560049 148392268 7832220 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, HTR4, C5orf46, SPINK6, SPINK14, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, NA NA NA NA NA NA NA NA NA LTS-035 PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, LOC729080, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.427420039188774 76 0.0760575993642491 1.11447410962769 5902 0.288779531118786 3 2 1 -6.97318978154313 LTS-035 NA NA NA NA LTS-035 chr5 148392269 150444781 2052513 * c(TNIP1, CDX1, SYNPO, PPARGC1B, AFAP1L1, GRPEL2, ZNF300P1, CSF1R, CSNK1A1, SLC26A2, ABLIM3, HMGXB3, IL17B, GPX3, NDST1, ARSI, IRGM, ARHGEF37, MIR143, DCTN4, PDE6A, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, TIGD6, SMIM3, ZNF300, MYOZ3, CD74) 0.43206029681174 71 0.08670848034293 1.18716839227684 3754 0.301786778133661 3 2 1 -6.79670021578261 LTS-035 chr5 150444782 150480223 35442 * TNIP1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-035 chr5 150480224 162945782 12465559 * c(C5orf52, MIR3142, MIR3141, LOC100652758, G3BP1, SLU7, FAXDC2, FAM114A2, SOX30, PWWP2A, C1QTNF2, LSM11, NUDCD2, UBLCP1, ADRA1B, SLC36A2, PPP1R2P3, FAM71B, RNF145, EBF1, SLC36A1, FABP6, FAT2, ATP10B, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GRIA1, MRPL22, ANXA6, HMMR, NIPAL4, IL12B, ITK, SAP30L-AS1, MIR146A, NA NA NA NA NA NA NA NA NA LTS-035 FNDC9, MFAP3, ATOX1, THG1L, GALNT10, NMUR2, ZBED8, SGCD, SPARC, TTC1, CCNJL, SAP30L, HAVCR2, ADAM19, CCNG1, TIMD4, PTTG1, CNOT8, HAND1, MED7, CLINT1) 0.425503559332874 118 0.0582369315805107 1.09194291275683 6570 0.248503179774491 3 2 1 -7.47795269089666 LTS-035 NA NA NA NA LTS-035 chr5 162945783 168250341 5304559 * c(MIR103B1, WWC1, MAT2B, FBLL1, MIR103A1, MIR218-2, TENM2, RARS, SLIT3, PANK3) 0.435970340730129 23 0.100079652072203 1.21986797851089 1047 0.292471002722107 3 2 1 -6.83375378335075 LTS-035 chr5 168250342 175386748 7136407 * c(FAM196B, LOC100268168, MIR3912, MIR4634, MIR378E, CPLX2, C5orf47, C5orf58, NKX2-5, CREBRF, DOCK2, DRD1, DUSP1, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, LOC285593, TLX3, KCNIP1, HRH2, KCNMB1, LCP2, FLJ16171, MSX2, NPM1, RPL26L1, HMP19, NEURL1B, SPDL1, ERGIC1, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, CPEB4, THOC3, STC2, FGF18, ATP6V0E1, BOD1, UBTD2, SFXN1) 0.420925137641034 69 0.0937862427813289 1.10672865217293 3605 0.320963696167372 3 2 1 -6.92261051094598 LTS-035 chr5 175386749 175388358 1610 * THOC3 NA 0 NA 0.494617359801926 70 0.380943272160771 0 NA NA -5.76457212039239 LTS-035 chr5 175388359 180374817 4986459 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-035 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.42786648720107 147 0.0736872045806315 1.09425907009289 6980 0.288223101534439 3 2 1 -6.99829553510635 LTS-035 NA NA NA NA LTS-035 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.96 1 NA NA NA NA NA LTS-035 chr5 180375294 180431478 56185 * c(BTNL3, BTNL8) 0.451654601812371 4 0.026849891371599 1.99066913589739 73 0.395032395642821 8 4 4 -7.26736061652758 LTS-035 chr5 180431479 180431754 276 * BTNL3 NA 0 NA 0.942 1 NA NA NA NA NA LTS-035 chr5 180431755 180660831 229077 * c(MIR4638, BTNL3, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.445150680199633 11 0.0301954240964361 1.08888079027269 361 0.274963613754418 2 1 1 -7.00438471117087 LTS-035 chr5 180660832 180688111 27280 * c(RACK1, SNORD95, SNORD96A, TRIM52, TRIM41) NA 0 NA 1.09766970505777 169 0.171426159464576 3 NA NA -5.76737650472327 LTS-035 chr6 203389 312023 108635 * DUSP22 0.232 1 NA 0.821048553242802 26 0.29159939062931 1 1 0 -5.7665248523738 LTS-035 chr6 312024 2948982 2636959 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, IRF4, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, FOXQ1) 0.32335636867098 39 0.0758791122517479 0.895642773457045 1056 0.245316610511889 2 2 0 -7.02151009436653 LTS-035 chr6 2948983 2949146 164 * SERPINB6 NA 0 NA 1.019 1 NA NA NA NA NA LTS-035 chr6 2949147 18161563 15212417 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, ECI2, CAP2, FARS2, RPP40, SNRNP48, DSP, EDN1, PIP5K1P1, F13A1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, FAM217A, SIRT5, FAM50B, GCNT2, GMPR, LY86-AS1, CAGE1, MYLIP, HIVEP1, TUBB2B, C6orf52, JARID2, NHLRC1, PSMG4, LINC01011, HTATSF1P2, NA NA NA NA NA NA NA NA NA LTS-035 STMND1, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, FAM8A1, TMEM14C, SERPINB6, GFOD1, ELOVL2, PAK1IP1, LYRM4, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, BPHL, SSR1, TFAP2A, TPMT, TUBB2A, HULC, TXNDC5, TMEM14B, RIOK1, DTNBP1, ADTRP, RIPK1, PRPF4B, GCM2, CD83, CDYL, LY86, EEF1E1, NUP153) 0.29200068511087 223 0.0539267466922214 0.995347040673275 7487 0.29436896230323 2 2 0 -6.76040894924847 LTS-035 NA NA NA NA LTS-035 chr6 18161564 18161625 62 * KDM1B NA 0 NA 1.205 1 NA NA NA NA NA LTS-035 chr6 18161626 18166685 5060 * KDM1B 0.464 1 NA 1.42927941256734 11 0.424072742473613 4 4 0 -5.76442950117279 LTS-035 chr6 18166686 18439987 273302 * c(KDM1B, RNF144B, DEK) 0.454636251343017 17 0.0271402945495308 1.29014854396693 272 0.288987404554796 4 2 2 -7.37625308546041 LTS-035 chr6 18439988 18457445 17458 * RNF144B NA 0 NA 2.134 1 NA NA NA NA NA LTS-035 chr6 18457446 18468936 11491 * RNF144B 0.491362271505401 2 0.00919238815542513 1.88668372956288 91 0.504769066021493 6 3 3 -14.0239373979048 LTS-035 chr6 18468937 24601262 6132326 * c(NRSN1, MBOAT1, HDGFL1, E2F3, RNF144B, GPLD1, ID4, KAAG1, CASC15, DCDC2, CDKAL1, PRL, MRS2, SOX4, MIR548A1, NBAT1, ALDH5A1, KIAA0319) 0.418134296389931 45 0.0880461196868959 1.37057488258928 1305 1.03354945512936 4 2 2 -6.73711130528424 LTS-035 chr6 24601263 29798083 5196821 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA LTS-035 HCG11, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, ZSCAN31, ZNF192P1, SLC17A1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, C6orf62, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, ZSCAN12, KIAA0319) 0.413611209527931 109 0.0635360054545983 1.17623938864809 5257 0.298451381737497 3 2 1 -6.74796435138795 LTS-035 NA NA NA NA LTS-035 chr6 29798084 29798154 71 * character(0) NA 0 NA 1.03894760623423 3 0.0404145188432738 2 NA NA -5.7644981370445 LTS-035 chr6 29798155 29855582 57428 * character(0) NA 0 NA 0.512 1 NA NA NA NA NA LTS-035 chr6 29855583 29855952 370 * character(0) 0.256 1 NA 1.49172275855025 7 9.33485805998142 5 5 0 -5.76441014352901 LTS-035 chr6 29855953 29911154 55202 * character(0) 0.383828610387151 22 0.0759860433756015 0.567557554543722 66 0.43819974822827 1 1 0 -6.77517187857183 LTS-035 chr6 29911155 29911164 10 * character(0) NA 0 NA 1.321 1 NA NA NA NA NA LTS-035 chr6 29911165 29912386 1222 * character(0) 0.408190285119261 3 0.0330807093837682 0.981406533848165 7 0.583167132786052 10 6 4 -6.73509692557922 LTS-035 chr6 29912387 29912410 24 * character(0) 0.323 1 NA 0.743 1 NA NA NA NA NA LTS-035 chr6 29912411 31002527 1090117 * character(0) 0.362893358991699 84 0.100758189996673 1.18623099334128 2702 0.306125953790223 3 2 1 -6.83025489518176 LTS-035 chr6 31002528 31079994 77467 * character(0) 0.41 1 NA 1.16962532918213 27 0.232256532450859 3 3 0 -5.76448795240232 LTS-035 chr6 31079995 31238493 158499 * character(0) 0.420096646693626 60 0.0468450354320793 1.19223801929121 464 1.03348060328427 4 2 2 -6.74206731012213 LTS-035 chr6 31238494 31238507 14 * character(0) 0.365 1 NA 0.365 1 NA NA NA NA NA LTS-035 chr6 31238508 31324208 85701 * character(0) 0.400845519452937 31 0.0641402026142563 0.785012810944625 84 0.381708239561537 3 2 1 -6.79250989468819 LTS-035 chr6 31324209 31324290 82 * character(0) NA 0 NA 1.098 1 NA NA NA NA NA LTS-035 chr6 31324291 31964398 640108 * character(0) 0.40296033518555 99 0.06464405179351 1.16694265411004 2999 0.264737913489974 3 2 1 -6.7338826663259 LTS-035 chr6 31964399 31965404 1006 * character(0) NA 0 NA 2.376 1 NA NA NA NA NA LTS-035 chr6 31965405 31973863 8459 * character(0) 0.474 1 NA 2.06361614600293 12 0.485012745849389 7 7 0 -5.76444325557473 LTS-035 chr6 31973864 31977493 3630 * character(0) 0.329 1 NA 2.28483891236066 48 0.741476013825137 9 9 0 -5.7644175801289 LTS-035 chr6 31977494 31997614 20121 * character(0) 0.344919737968525 2 0.0601040764008566 2.61290049980688 59 1.08949672588852 10 7 3 -6.73330491219417 LTS-035 chr6 31997615 31997642 28 * character(0) NA 0 NA 1.396 1 NA NA NA NA NA LTS-035 chr6 31997643 32489908 492266 * HLA-DRB5 0.37647204634555 95 0.0675529189931988 1.23685439138085 1577 0.386118923180375 4 3 1 -6.82835952510525 LTS-035 chr6 32489909 32497904 7996 * HLA-DRB5 0.055 1 NA 1.62732136399263 6 0.939055358680556 5 5 0 -5.76441436698417 LTS-035 chr6 32497905 32610689 112785 * c(HLA-DQA1, HLA-DRB5) 0.296552583566156 59 0.108548757921446 1.47803415345685 145 1.21780087575453 2 2 0 -6.7408632570224 LTS-035 chr6 32610690 32610695 6 * HLA-DQA1 0.3 1 NA 2.872 1 NA NA NA NA NA LTS-035 chr6 32610696 32627600 16905 * HLA-DQA1 0.241834503646123 30 0.0288703204398367 2.32474616184023 44 1.41802373775072 3 3 0 -6.74214130412834 LTS-035 chr6 32627601 32627617 17 * character(0) 0.278 1 NA 1.256 1 NA NA NA NA NA LTS-035 chr6 32627618 32629314 1697 * character(0) 0.316543205155629 22 0.0567628163150607 1.60329092272666 40 0.782168218758534 8 6 2 -6.73328380731044 LTS-035 chr6 32629315 32629718 404 * character(0) 0.419 1 NA 1.16420711881301 5 0.25964437217086 3 3 0 -5.76441085244929 LTS-035 chr6 32629719 32725764 96046 * character(0) 0.377001087694927 59 0.0827836850803829 1.43172532262795 132 0.683744197004488 6 4 2 -6.74173557847885 LTS-035 chr6 32725765 32726623 859 * character(0) NA 0 NA 1.105 1 NA NA NA NA NA LTS-035 chr6 32726624 32972832 246209 * character(0) 0.400236671852416 39 0.117823571759128 1.11189108579597 671 0.269718046372511 3 2 1 -6.74089562193912 LTS-035 chr6 32972833 32972931 99 * character(0) NA 0 NA 1.201 1 NA NA NA NA NA LTS-035 chr6 32972932 33053682 80751 * character(0) 0.311292621312435 31 0.0897014882220318 1.61850477099401 181 5.71390669479929 5 4 1 -6.73330434102143 LTS-035 chr6 33053683 33053723 41 * character(0) 0.357 1 NA 2.488 1 NA NA NA NA NA LTS-035 chr6 33053724 33053728 5 * character(0) 0.356 1 NA 2.169 1 NA NA NA NA NA LTS-035 chr6 33053729 33053772 44 * character(0) 0.307 1 NA 1.7659617970284 6 1.27115259377726 6 6 0 -5.7644101362001 LTS-035 chr6 33053773 33054721 949 * character(0) 0.22929248350168 32 0.0696495548002352 3.05257384990592 55 21.9840976730832 12 10 2 -6.73350623601521 LTS-035 chr6 33054722 33054807 86 * character(0) 0.356 1 NA 1.6676625277252 3 0.514054796041563 5 5 0 -5.7644106641857 LTS-035 chr6 33054808 33054861 54 * character(0) 0.345 1 NA 2.443 1 NA NA NA NA NA LTS-035 chr6 33054862 33054874 13 * character(0) NA 0 NA 1.276 1 NA NA NA NA NA LTS-035 chr6 33054875 37599840 4544966 * c(MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, BRPF3, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, NA NA NA NA NA NA NA NA NA LTS-035 UHRF1BP1, TBC1D22B, MAPK13, CPNE5, BAK1, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, RNF8) 0.406758574957534 161 0.0905441023592906 1.17645553729436 6842 0.496600770624266 3 2 1 -6.73384086810773 LTS-035 NA NA NA NA LTS-035 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.617 1 NA NA NA NA NA LTS-035 chr6 37599845 46189576 8589732 * c(LOC100131047, LINC01512, TOMM6, MIR4647, MIR4641, MIR4642, RCAN2, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, BTBD9, FOXP4, KLHDC3, TAF8, PTCRA, DNAH8, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, ENPP4, CUL9, UBR2, DAAM2, GLTSCR1L, ZNF318, YIPF3, USP49, MDGA1, GNMT, GLO1, GLP1R, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, TREML1, TREML3P, NA NA NA NA NA NA NA NA NA LTS-035 SLC35B2, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, NFYA, MRPL2, PEX6, PGC, CLIC5, TREM2, TREM1, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, SAYSD1, TRERF1, LRFN2, AARS2, XPO5, PTK7, ENPP5, PRPH2, ZFAND3, C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, BYSL, TDRG1, VEGFA, TFEB, TREML2, KCNK16, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, TJAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 NCR2, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.401958499855313 149 0.0753304095088515 1.21563278548159 9077 0.344858557460465 3 2 1 -6.76978959046667 LTS-035 NA NA NA NA LTS-035 chr6 46189577 49399240 3209664 * c(ANKRD66, RCAN2, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, CD2AP, ADGRF1, TNFRSF21, MEP1A, PTCHD4, MUT, CYP39A1, PLA2G7, SLC25A27) 0.39452954709126 51 0.0980690872923417 1.29286357977603 1491 0.367277475094085 3 2 1 -6.85346858786647 LTS-035 chr6 49399241 57254927 7855687 * c(MIR5685, MLIP-IT1, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, FAM83B, ICK, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, MUT, RAB23, PGK2, PKHD1, HMGCLL1, CENPQ, LRRC1, PRIM2, KIAA1586, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, CRISP2, LOC730101, GSTA7P, COL21A1, NA NA NA NA NA NA NA NA NA LTS-035 TFAP2D, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.447462525448322 99 0.0566937783009886 1.05425456776723 4973 0.294637786751284 2 1 1 -7.10131833819577 LTS-035 NA NA NA NA LTS-035 chr6 57254928 57254955 28 * PRIM2 0.386 1 NA 1.3888699129302 3 0.190938035323854 4 4 0 -5.76441014663636 LTS-035 chr6 57254956 57512678 257723 * PRIM2 0.337668294227953 37 0.0763677289830595 1.23189592948971 86 0.56537822273848 4 3 1 -6.76370656692482 LTS-035 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.02326061138657 19 0.163142853485143 2 NA NA -5.80356196056385 LTS-035 chr6 62390154 63921442 1531289 * KHDRBS2 0.464 1 NA 0.986075025045104 79 0.202500711448055 2 2 0 -5.7652907937722 LTS-035 chr6 63921443 84317533 20396091 * c(KHDC1L, HMGN3-AS1, MIR4282, LOC100506804, KCNQ5-AS1, RWDD2A, MB21D1, COL9A1, COL12A1, COL19A1, COX7A2, IRAK1BP1, B3GAT2, SDHAF4, CD109, KHDC3L, PRSS35, LCA5, EEF1A1, RIMS1, DOPEY1, PHF3, MTO1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, DPPA5, EYS, IMPG1, NA, MIR30A, MIR30C2, ME1, LOC441155, OOEP, SLC25A51P1, MYO6, LGSN, PGM3, PHIP, DDX43, FAM46A, TMEM30A, LMBRD1, KCNQ5, FAM135A, ADGRB3, BCKDHB, SMAP1, NA NA NA NA NA NA NA NA NA LTS-035 RNY4, ELOVL4, TPBG, TTK, PTP4A1, OGFRL1, LINC00472, KHDC1, SH3BGRL2, LINC01621, UBE3D, HMGN3, SNAP91) 0.449512940165194 108 0.07191520513057 1.02234499537298 6755 0.291411918907747 2 1 1 -7.04925080342041 LTS-035 NA NA NA NA LTS-035 chr6 84317534 84669584 352051 * c(RIPPLY2, CYB5R4, SNAP91) 0 1 NA 1.06327829178707 179 0.257170568444846 2 2 0 -5.78562714538618 LTS-035 chr6 84669585 85445442 775858 * c(MRAP2, CEP162, CYB5R4, TBX18) NA 0 NA 1.02087920480216 239 0.243877515439989 2 NA NA -5.77751086425173 LTS-035 chr6 85445443 85445448 6 * TBX18 NA 0 NA 0.818 1 NA NA NA NA NA LTS-035 chr6 85445449 88367783 2922335 * c(SYNCRIP, SLC35A1, CGA, CFAP206, C6orf163, ZNF292, ORC3, SNORD50A, HTR1E, GJB7, SNHG5, NT5E, RARS2, SMIM8, SNX14, LINC01590, SNORD50B, TBX18) 0.347152440071189 12 0.197302471225059 0.975392365836386 1310 0.267969282508838 2 2 0 -6.77530671377069 LTS-035 chr6 88367784 88849949 482166 * c(CNR1, ORC3, AKIRIN2, SPACA1) 0.488 1 NA 0.937097126476846 145 0.209366626040582 2 2 0 -5.77755396358932 LTS-035 chr6 88849950 151775790 62925841 * c(LIN28B-AS1, UST-AS1, TRAPPC3L, LOC100130476, TSTD3, LINC00271, LOC100132735, LOC100287632, NHEG1, MIR2113, LOC100422737, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4464, MIR4643, MIR4465, RAET1E-AS1, MIR5695, UST, LOC100996634, TRDN, CITED2, FUT9, TRAF3IP2, HBS1L, SMPDL3A, PNRC1, ASCC3, RAB32, KATNA1, BVES, SEC63, GTF3C6, MTFR2, KLHL32, TMEM200A, NUS1, GINM1, IL22RA2, SLC18B1, NA NA NA NA NA NA NA NA NA LTS-035 SLC16A10, CNR1, COL10A1, ADAT2, CLVS2, TAAR1, STXBP5, NCOA7, HINT3, RAET1E, PM20D2, SRSF12, CTGF, LOC153910, ZC2HC1B, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, RNF217, NKAIN2, BVES-AS1, OLIG3, TXLNB, AIM1, EPB41L2, EPHA7, EYA4, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, ANKRD6, FOXO3, CDK19, TAB2, MDN1, TSPYL4, SASH1, UFL1, HEY2, HEBP2, BRD7P3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FRK, VGLL2, LACE1, FUCA2, FYN, TMEM244, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, SHPRH, ASF1A, CCDC28A, MTHFD1L, PNISR, MOXD1, AMD1, FBXL4, GJA1, PDE7B, SESN1, GPR6, LINC00326, PHACTR2-AS1, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, GRM1, DSE, HDAC2, HIVEP2, TAAR6, HSF2, SLC35D3, ZC3H12D, RSPH4A, IFNGR1, ECT2L, NUP43, C6orf58, RAET1G, ARG1, KPNA5, HMGA1P7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SUMO4, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LIN28B, SAMD5, IYD, LAMA2, LAMA4, MARCKS, MAN1A1, MAP3K5, FAM26F, FLJ46906, GSTM2P1, RFPL4B, MYB, NMBR, HDDC2, PCMT1, TUBE1, C6orf203, CDC40, RWDD1, AIG1, UBE2J1, VTA1, ENPP1, ENPP3, HECA, COQ3, PEX7, PLAGL1, PLN, IL20RA, POU3F2, AHI1, RMND1, SOBP, QRSL1, VNN3, PREP, PKIB, ECHDC1, HYMAI, PDSS2, GOPC, ADGRG6, ARFGEF3, NHSL1, LYRM2, PLEKHG1, SERINC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HACE1, ZBTB2, BEND3, PTPRK, ABRACL, RRAGD, PRDM13, PBOV1, SNORA33, REV3L, BACH2, TRMT11, ROS1, FAM229B, RPS12, PRDM1, PERP, POPDC3, TSG1, LOC643623, TRAF3IP2-AS1, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, MICAL1, SIM1, SMPD2, MAP3K7, MIR548B, TCF21, NR2E1, TNFAIP3, TPD52L1, TSPYL1, MCHR2-AS1, TPI1P3, METTL24, KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, OR2A4, RNF217-AS1, EPM2A, ARMT1, FAM184A, MANEA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ADGB, ULBP2, ULBP1, GPR63, PPP1R14C, RNF146, SF3B5, TAAR8, ARMC2, FBXO30, RPF2, STX7, L3MBTL3, MCHR2, FAXC, GJA10, RTN4IP1, RSPO3, LRP11, LTV1, USP45, REPS1, PEX3, DDO, PPIL4, SLC22A16, STX11, SNX3, RNGTT, CD164, WISP3, VNN2, VNN1, CCNC, WASF1, TAAR5, MAP7, LATS1, MFSD4B, TAAR2, TAAR3, ARHGAP18, MED23, FHL5, AKAP7, ATG5, TBPL1, AKAP12, KIAA0408, PHACTR2, BCLAF1, ZBTB24, FIG4, CASP8AP2) 0.44611296598281 499 0.0714415075913822 0.99098630956425 27515 0.302715471356999 2 1 1 -6.83561568340355 LTS-035 NA NA NA NA LTS-035 chr6 151775791 151779401 3611 * ARMT1 NA 0 NA 1.272 1 NA NA NA NA NA LTS-035 chr6 151779402 152583328 803927 * c(ESR1, SYNE1, ARMT1, CCDC170) 0.396468607006847 18 0.0414522719482684 1.29146362251559 699 0.377557784553381 3 2 1 -6.77853475573846 LTS-035 chr6 152583329 152589130 5802 * SYNE1 NA 0 NA 1.032 1 NA NA NA NA NA LTS-035 chr6 152589131 154476227 1887097 * c(SYNE1, IPCEF1, FBXO5, RGS17, OPRM1, MTRF1L, VIP, MYCT1) 0.458888375523802 34 0.0323875952794544 1.0663570950146 1108 0.396406897459999 2 1 1 -7.37186730273354 LTS-035 chr6 154476228 167591954 13115727 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, AGPAT4, TULP4, NA NA NA NA NA NA NA NA NA LTS-035 ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.455955484923314 179 0.0647679919994956 0.991052726668909 6316 0.888711603743875 2 1 1 -6.86666557032717 LTS-035 NA NA NA NA LTS-035 chr6 167591955 167592105 151 * TCP10L2 0.2 1 NA 1.02588219586049 5 0.956121958747941 2 2 0 -5.76441034157586 LTS-035 chr6 167592106 167592803 698 * TCP10L2 0.396 1 NA 0.49028718432328 25 0.423609293256573 0 0 0 -5.7644734582985 LTS-035 chr6 167592804 167594694 1891 * TCP10L2 0.267664978483884 5 0.0255088220033776 1.51637999092599 50 0.447545825267408 10 8 2 -6.73493857132052 LTS-035 chr6 167594695 167595179 485 * TCP10L2 NA 0 NA 1.087 1 NA NA NA NA NA LTS-035 chr6 167595180 167621703 26524 * TCP10L2 0.305217569491259 3 0.134643974985886 1.01533391451781 43 0.348773522647101 2 2 0 -6.73670091216587 LTS-035 chr6 167621704 167622284 581 * character(0) 0.45 1 NA 0.604867775357967 19 0.27535819309206 0 0 0 -5.76441950327793 LTS-035 chr6 167622285 167786006 163722 * c(UNC93A, TCP10, TTLL2) 0.472736347569608 6 0.0255949213712408 1.161187456992 144 0.883715920028364 2 1 1 -8.31081869287978 LTS-035 chr6 167786007 167787845 1839 * TCP10 NA 0 NA 0.634408005063612 48 1.04731801005444 0 NA NA -5.76441880465565 LTS-035 chr6 167787846 167789244 1399 * TCP10 NA 0 NA 0.191231905641459 40 0.208069476500716 0 NA NA -5.78803178978469 LTS-035 chr6 167789245 167796268 7024 * TCP10 0.427 1 NA 0.838184145538611 42 0.683990927461888 1 1 0 -5.76445837987883 LTS-035 chr6 167796269 167796270 2 * TCP10 NA 0 NA 0.891 1 NA NA NA NA NA LTS-035 chr6 167796271 169115483 1319213 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, FRMD1) 0.466178958349264 9 0.0231948270094864 1.08238854884786 800 0.216541000751031 2 1 1 -8.35092297619405 LTS-035 chr6 169615866 170592293 976428 * c(LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, TCTE3, THBS2, LINC00574) 0.466010579251516 17 0.0361009613689817 0.96124769238309 599 0.21292414289384 2 1 1 -7.42072553567377 LTS-035 chr6 170592294 170893599 301306 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.95644494004454 367 0.19587846384223 2 NA NA -5.76717724152412 LTS-035 chr7 193047 227931 34885 * FAM20C 0.496 1 NA 0.913483028080943 37 0.188043750100746 2 2 0 -5.76732551636693 LTS-035 chr7 227932 3205635 2977704 * c(WI2-2373I1.2, MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19) 0.445284173932906 82 0.0976172131086103 1.01930398489901 3313 0.259110639692878 2 1 1 -6.7993850711532 LTS-035 chr7 3205636 3205705 70 * character(0) 0.18 1 NA 1.498 1 NA NA NA NA NA LTS-035 chr7 3205706 5926027 2720322 * c(RBAK-RBAKDN, MIR4656, RNF216-IT1, SDK1, FOXK1, MMD2, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216P1, RNF216, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TNRC18, AP5Z1) 0.412592364793898 47 0.131542809147052 1.04025682424796 2011 0.322807610309777 2 1 1 -6.7939563319317 LTS-035 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.761 1 NA NA NA NA NA LTS-035 chr7 5937950 5958596 20647 * CCZ1 0.396085778089951 4 0.0682983650365561 0.661524808599078 53 0.235500852799062 3 2 1 -6.81463970862555 LTS-035 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 1.808 1 NA NA NA NA NA LTS-035 chr7 5959444 6026895 67452 * c(RSPH10B, CCZ1, PMS2) 0.242348623184771 5 0.135945945139971 1.13550546903782 99 0.944180762625931 3 3 0 -6.73331201472357 LTS-035 chr7 6026896 6036980 10085 * PMS2 0.45 1 NA 0.941707422724827 23 0.14678644647775 2 2 0 -5.76485419934177 LTS-035 chr7 6036981 6786822 749842 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.457107669777199 37 0.0359300287637926 0.992508770674054 1256 0.266822938810342 2 1 1 -7.17353160251883 LTS-035 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.386 1 NA NA NA NA NA LTS-035 chr7 6790904 6836338 45435 * c(PMS2CL, RSPH10B2) NA 0 NA 0.694566129861361 52 0.295840160947703 1 NA NA -5.76850950998764 LTS-035 chr7 6836339 6863802 27464 * c(CCZ1B, RSPH10B2) 0.478 1 NA 1.32989220606289 62 0.696995610470637 4 4 0 -5.76445962745477 LTS-035 chr7 6863803 6864269 467 * CCZ1B NA 0 NA 0.838 1 NA NA NA NA NA LTS-035 chr7 6864270 30880542 24016273 * c(JAZF1-AS1, LOC100131257, HOXA-AS3, HOTTIP, MIR3146, MIR550B1, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, NOD1, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, INMT, CHN2, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, CRHR2, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, CCZ1B, THSD7A, NA NA NA NA NA NA NA NA NA LTS-035 DKFZP586I1420, MTURN, PRR15, FERD3L, RPL23P8, ZNRF2, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, GARS, TSPAN13, C7orf71, BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, LOC401320, MIR148A, MEOX2, LOC441204, DPY19L2P3, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, CPVL, TOMM7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TMEM106B, FKBP14, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, WIPF3, LOC646762, SP4, SNORD93, MIR550A1, TWIST1, UMAD1, ISPD, GGCT, FAM188B, FAM126A, PLEKHA8, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, PHF14, HDAC9, RAPGEF5, SCRN1, KIAA0087, TRIL) 0.445342505762245 286 0.0642236546661163 1.02123689623507 9951 0.294466497237795 2 1 1 -7.06243999358954 LTS-035 NA NA NA NA LTS-035 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.188 1 NA NA NA NA NA LTS-035 chr7 30882039 32338942 1456904 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.41765798417344 8 0.168179963134733 1.13135778483081 973 0.312500350231365 3 2 1 -6.7534572232722 LTS-035 chr7 32338943 32524917 185975 * LOC100130673 NA 0 NA 0.846 1 NA NA NA NA NA LTS-035 chr7 32524918 56151489 23626572 * c(DDC-AS1, DPY19L1P1, C7orf72, MIR1200, MIR3943, MIR550B2, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, AOAH-IT1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, FKBP9, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, BMPER, EGFR, VSTM2A, TMED4, HECW1, AVL9, NACAD, COBL, DPY19L1, KIAA0895, NUDCD3, SEC61G, LSM5, LINC00957, SUN3, SUMF2, KBTBD2, GBAS, GCK, VPS41, BBS9, AMPH, GLI3, NA NA NA NA NA NA NA NA NA LTS-035 POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NPC1L1, AOAH, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, GPR141, FKBP9P1, INHBA, VWC2, NPSR1, LINC00997, LOC401324, RASA4CP, C7orf65, LINC01446, NPSR1-AS1, ZNRF2P1, RP9P, TARP, OGDH, NT5C3A, NME8, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, ANLN, DDX56, EPDR1, PPIA, DPY19L2P1, URGCP, COA1, LANCL2, PSMA2, YAE1D1, TBX20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PSPH, PURB, MYL7, RALA, RP9, FIGNL1, MYO1G, SEPT7P2, HERPUD2, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, SNORA15, MIR550A2, UPP1, C7orf25, SUGCT, C7orf69, EEPD1, VOPP1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, CCT6A, TBRG4, STK17A, H2AFV, ELMO1, SEPT7) 0.447407535495254 303 0.071859746444982 1.02572587335781 11324 0.438359683060291 2 1 1 -6.94001424957584 LTS-035 NA NA NA NA LTS-035 chr7 56151490 57533232 1381743 * c(LOC100130849, MIR3147, DKFZp434L192, NUPR2, ZNF716, CHCHD2, PHKG1, PSPH, GUSBP10, LOC650226, ZNF479) NA 0 NA 1.07430639626531 175 0.357660245803991 2 NA NA -5.81873166111794 LTS-035 chr7 62758725 63023528 264804 * ZNF733P 0.433 1 NA 1.08156699452915 7 0.683454809179419 3 3 0 -5.76702962036682 LTS-035 chr7 63023529 64643425 1619897 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.445737934347571 27 0.10481446095397 0.998362388934663 622 0.24995370295333 2 1 1 -6.76139518215564 LTS-035 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-035 chr7 64643764 65150775 507012 * c(ZNF92, LOC441242, INTS4P2) 0.456628610095137 4 0.0405904340126258 0.588445761673929 91 0.207565492555082 0 0 0 -7.0724329136306 LTS-035 chr7 65150776 65154685 3910 * c(LOC441242, INTS4P2) NA 0 NA 0.786 1 NA NA NA NA NA LTS-035 chr7 65154686 77762229 12607544 * c(POM121C, PMS2P9, LOC100133091, MIR4284, MIR3914-1, MIR3914-2, APTR, MIR4651, MIR4650-1, MIR4650-2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GTF2IP1, GUSB, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, GTF2IRD2P1, MDH2, ASL, LOC441242, NA NA NA NA NA NA NA NA NA LTS-035 TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.433656440823268 150 0.0851087539563352 0.99555418901889 5916 0.570939680588801 2 1 1 -6.74476729652204 LTS-035 NA NA NA NA LTS-035 chr7 77762230 86506899 8744670 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CACNA2D1, CD36, SEMA3E, MAGI2) 0.443866232467949 26 0.100443447540624 1.08049401663078 2008 0.246249235433352 3 2 1 -7.44160755176376 LTS-035 chr7 86506900 100321092 13814193 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-035 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.445854108844982 150 0.0725126729647458 0.994398127889811 12048 0.23244663381913 2 1 1 -6.81419054382202 LTS-035 NA NA NA NA LTS-035 chr7 100321093 100344360 23268 * c(EPO, ZAN) NA 0 NA 0.285402465877816 39 0.389843352394533 0 NA NA -5.8098400103212 LTS-035 chr7 100344361 100345155 795 * ZAN NA 0 NA 1.266 1 NA NA NA NA NA LTS-035 chr7 100345156 100463492 118337 * c(EPHB4, SLC12A9, ZAN) 0.452 1 NA 1.08245785782112 419 5.18507270914504 3 3 0 -5.76443010208618 LTS-035 chr7 100463493 100549499 86007 * c(UFSP1, ACHE, SRRT, SLC12A9, TRIP6) NA 0 NA 0.991457524214539 268 0.276543579042473 2 NA NA -5.7645027156441 LTS-035 chr7 100549500 100549505 6 * character(0) 0.209 1 NA 5.123 1 NA NA NA NA NA LTS-035 chr7 100549506 100550184 679 * character(0) 0.375434877285476 24 0.0701023966387224 2.53384208903861 36 1.15797955817141 14 9 5 -6.73362390832475 LTS-035 chr7 100550185 100550203 19 * character(0) 0.046 1 NA 1.80580794297449 3 1.10367945225656 6 6 0 -5.76441013602891 LTS-035 chr7 100550204 100550748 545 * character(0) 0.248879367580529 10 0.110305434539232 2.23264486172492 21 1.09628416111187 11 9 2 -6.73309085666726 LTS-035 chr7 100550749 100551059 311 * character(0) 0.264686749913808 9 0.132139131221603 0.645457062953469 43 0.339505128097397 10 8 2 -6.73633840973027 LTS-035 chr7 100551060 100551065 6 * character(0) 0.313 1 NA 1.72 1 NA NA NA NA NA LTS-035 chr7 100551066 100551566 501 * character(0) 0.251240061511091 24 0.116676368644212 2.72909829229075 32 1.34970731556942 19 15 4 -6.73335197589817 LTS-035 chr7 100551567 100551578 12 * character(0) 0.371 1 NA 3.075 1 NA NA NA NA NA LTS-035 chr7 100551579 100552788 1210 * character(0) 0.378314583460823 37 0.03999247301553 2.13221283897506 63 1.03088165950498 14 9 5 -6.73337202326097 LTS-035 chr7 100552789 100552794 6 * character(0) NA 0 NA 1.164 1 NA NA NA NA NA LTS-035 chr7 100552795 100615387 62593 * MUC12 0.393719484728949 31 0.0529362976879119 1.33995052766152 109 1.02328511907989 8 5 3 -6.74748470488737 LTS-035 chr7 100615388 100861416 246029 * c(MIR4653, MUC12, ZNHIT1, AP1S1, MUC17, MOGAT3, NAT16, SERPINE1, VGF, TRIM56, PLOD3) 0.484 1 NA 1.08349522656218 839 0.266606703420334 3 3 0 -5.7797290498412 LTS-035 chr7 100861417 102136677 1275261 * c(RASA4B, LOC100289561, MIR4285, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, COL26A1, CUX1, LRWD1, CLDN15, FIS1, POLR2J, ALKBH4, IFT22, SPDYE6, PRKRIP1, ORAI2, MYL10) 0.430642669825089 34 0.0918173805580894 1.05118042068346 1193 0.262018212202343 2 1 1 -6.78957722864198 LTS-035 chr7 102136678 102158078 21401 * RASA4B NA 0 NA 0.079 1 NA NA NA NA NA LTS-035 chr7 102158079 102389973 231895 * c(RASA4B, SPDYE2B, RASA4, FAM185A, POLR2J2, POLR2J3) 0.31217236885271 3 0.13779090439261 0.646601223549436 48 0.353872314893701 1 1 0 -6.86936194436067 LTS-035 chr7 102389974 102390019 46 * FAM185A NA 0 NA 0.865 1 NA NA NA NA NA LTS-035 chr7 102390020 141619710 39229691 * c(LOC100129148, RPL19P12, LOC100130705, EFCAB10, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, KMT2E-AS1, LINC01004, SMKR1, MIR3666, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, NAMPT, AASS, LRRC17, FAM3C, COG5, CFTR, DUS4L, ZNF277, CHRM2, TSGA13, OR9A4, CPA1, CPA2, PRSS37, KLF14, SSMEM1, SVOPL, LRGUK, ASZ1, ASB15, BMT2, CLEC2L, FMC1, FEZF1-AS1, IQUB, C7orf77, C7orf66, TMEM213, MGC27345, RNF133, THAP5, CCDC71L, NA NA NA NA NA NA NA NA NA LTS-035 ZNF800, DLD, SLC26A3, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, MKRN1, UBN2, POT1, HYALP1, TES, SLC13A4, COPG2, HBP1, DNAJC2, SND1, SND1-IT1, DENND2A, GPR22, WEE2-AS1, SLC26A4-AS1, LSMEM1, TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, IFRD1, DPY19L2P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LOC349160, IMPDH1, IRF5, KCND2, SLC26A5, LHFPL3, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LAMB1, LEP, LINC00998, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, AKR1B15, EIF3IP1, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRCAM, NRF1, WEE2, ORC5, ATP6V0A4, PNPLA8, PAX4, TAS2R3, TAS2R4, TAS2R16, CPA4, WNT16, ZC3HC1, LUC7L2, MRPS33, LSM8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SLC26A4, PIK3CG, PODXL, GPR85, TAS2R5, PUS7, ING3, LRRN3, CHCHD3, PPP1R3A, RBM28, TMEM140, AGK, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, ZC3HAV1, PSMC2, AKR1B10, KIAA1147, MIR490, STRIP2, PTN, KIAA1549, PTPRZ1, EXOC4, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, NA, C7orf73, CCDC136, PARP12, CREB3L2, SLC13A1, SMO, SPAM1, BPGM, AKR1D1, BRAF, SRPK2, SSBP1, SYPL1, TBXAS1, MIR592, MIR593, LHFPL3-AS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TMEM229A, UBE2H, WNT2, LUZP6, C7orf49, GCC1, ST7, CBLL1, CPED1, TTC26, CALD1, KDM7A, CALU, CAPZA2, ARMC10, IMMP2L, CTTNBP2, SLC37A3, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, WASL, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, PMPCB, CEP41, DOCK4) 0.445542089631517 344 0.0876715265207514 1.02003544006242 21079 0.272507546244695 2 1 1 -7.23656216065634 LTS-035 NA NA NA NA LTS-035 chr7 141619711 141627145 7435 * character(0) NA 0 NA 1.467 1 NA NA NA NA NA LTS-035 chr7 141627146 141952110 324965 * c(MOXD2P, PRSS58, CLEC5A, TAS2R38, MGAM, MGAM2) 0.46936871522055 17 0.0246172165961381 1.07539550252516 737 0.258355190824247 2 1 1 -8.24949327415195 LTS-035 chr7 141952111 142008718 56608 * c(PRSS58, NA) 0.204 1 NA 1.01545452271646 47 0.552960743379473 2 2 0 -5.76455113830471 LTS-035 chr7 142008719 142045613 36895 * character(0) 0.126989385822025 9 0.103669480133312 1.13773060049603 61 0.95594570775482 8 8 0 -6.7449670299669 LTS-035 chr7 142045614 142045897 284 * character(0) 0.373 1 NA 0.882108691415281 5 0.362380739002503 2 2 0 -5.76442443025986 LTS-035 chr7 142045898 142498837 452940 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.288015353445745 49 0.114335398426442 1.31660753241503 394 2.67162631189169 2 2 0 -6.73853773138481 LTS-035 chr7 142498838 142498897 60 * character(0) 0.385 1 NA 1.14662834379055 3 0.128157455238988 3 3 0 -5.76441199271303 LTS-035 chr7 142498898 143840031 1341134 * c(CLCN1, OR9A2, C7orf34, TMEM139, OR2A14, OR6B1, OR2F2, LOC154761, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR6V1, OR2A12, GSTK1, KEL, OR2A25, OR2A5, CTAGE15, OR2A2, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B, TCAF1) 0.446667889509428 51 0.0945958337597692 1.06033718675012 1691 0.388193506944751 2 1 1 -6.79682603391298 LTS-035 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.37 1 NA NA NA NA NA LTS-035 chr7 143883365 144072694 189330 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.431773039481493 2 0.0678822509939085 0.495365485355077 153 0.269941671832917 0 0 0 -6.77544015018812 LTS-035 chr7 144072695 144074199 1505 * ARHGEF5 NA 0 NA 0.766 1 NA NA NA NA NA LTS-035 chr7 144074200 155569167 11494968 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, NOBOX, ZNF786, ASB10, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, ZNF775, NA NA NA NA NA NA NA NA NA LTS-035 LINC00996, ATG9B, TMEM176B, REPIN1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ZNF398, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, SLC4A2, ACTR3C, LRRC61, SMARCD3, LOC728743, XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4) 0.435805943727722 216 0.0926628788055235 1.01546053686665 7551 0.300180870372914 2 1 1 -6.83653925933282 LTS-035 NA NA NA NA LTS-035 chr7 155569168 155572107 2940 * RBM33 0.493 1 NA 1.10041895216001 61 0.165205490521231 3 3 0 -5.76473120947147 LTS-035 chr7 155572108 155758648 186541 * c(RBM33, SHH) 0.341686167139031 9 0.174003591916949 1.03664693704025 213 0.305489684866071 2 2 0 -6.77985414485481 LTS-035 chr7 155758649 156431052 672404 * c(LOC285889, LINC00244) 0.477 1 NA 0.920806902882521 7 0.222016086933228 2 2 0 -5.79592246294809 LTS-035 chr7 156431053 158937585 2506533 * c(DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.467437549336299 43 0.026212459313384 0.987421333935708 1780 0.71865939484817 2 1 1 -7.98811555139157 LTS-035 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 1.134 2 0 0 NA NA -Inf LTS-035 chr8 182757 182934 178 * ZNF596 0.351 1 NA 0.648153876506003 3 0.11706550872624 0 0 0 -5.76451137154361 LTS-035 chr8 182935 7320350 7137416 * c(FAM66B, ZNF705G, LOC100287015, DEFB4B, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.381130054059707 106 0.0954670648297398 0.722526123928313 2354 0.218833055275751 1 1 0 -7.21226012552768 LTS-035 chr8 7320351 7752350 432000 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.365702549221314 2 0.13717871555019 0.474524392911046 83 0.315821360342434 0 0 0 -6.94398631443466 LTS-035 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.74 1 NA NA NA NA NA LTS-035 chr8 8175295 22105668 13930374 * c(NAT2, LOC100128993, FAM66D, FAM66A, MIR1322, MIR3926-2, MIR3926-1, LOC100506990, MIR4660, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDH, C8orf48, PRSS55, C8orf74, LGI3, DMTN, FDFT1, FGL1, XPO7, PSD3, DEFB109P1, DEFB130, NEIL2, GATA4, FGF20, GFRA2, XKR6, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, LPL, MIR124-1, MIR320A, NA NA NA NA NA NA NA NA NA LTS-035 ASAH1, MSR1, MSRA, MIR383, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, CSGALNACT1, HR, MTUS1, KIAA1456, DEFB135, DEFB136, DEFB134, SH2D4A, BLK, SFTPC, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, MTMR9, POLR3D, MIR597, MIR598, ZNF705D, FAM90A2P, LOC729732, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MFHAS1, RP1L1, PHYHIP) 0.407423967137122 227 0.0756405245076957 0.705522143857571 7186 0.574026318944123 1 1 0 -7.12861055020078 LTS-035 NA NA NA NA LTS-035 chr8 22105669 29927576 7821908 * c(MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, MIR548O2, SORBS3, PNMA2, ADAM28, CHRNA2, CLU, NKX2-6, ADRA1A, PEBP4, CDCA2, ESCO2, FBXO16, DPYSL2, DUSP4, EGR3, R3HCC1, EPHX2, EXTL3, PTK2B, TRIM35, RHOBTB2, KIF13B, SLC39A14, LOC254896, ADAMDEC1, GNRH1, LOC286059, SCARA5, FAM183CP, LOC389641, NUGGC, LOXL2, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2R2A, NA NA NA NA NA NA NA NA NA LTS-035 CCDC25, PPP3CC, INTS9, PBK, ZNF395, BIN3, CCAR2, LINC00589, PDLIM2, EBF2, POLR3D, BNIP3L, STC1, HMBOX1, FZD3, DOCK5, BIN3-IT1, STMN4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.391650471096028 160 0.0793715478623347 0.681274333485683 6926 0.353726243731223 1 1 0 -7.39272048898661 LTS-035 NA NA NA NA LTS-035 chr8 29927577 29931380 3804 * c(MIR548O2, SARAF) NA 0 NA 1.094 1 NA NA NA NA NA LTS-035 chr8 29931381 33424546 3493166 * c(RBPMS-AS1, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, LEPROTL1, GSR, GTF2E2, PURG, NRG1, SARAF, PPP2CB, TEX15, MBOAT4, WRN, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.345629717802099 27 0.0681519376810859 0.828592577110643 1570 0.19729369386794 1 1 0 -6.99696220031373 LTS-035 chr8 33424547 33455297 30751 * c(DUSP26, RNF122) NA 0 NA 0.915696205409539 41 0.156089495123166 2 NA NA -5.7678868873983 LTS-035 chr8 33455298 33455300 3 * DUSP26 0.404 1 NA 1.663 1 NA NA NA NA NA LTS-035 chr8 33455301 39313093 5857793 * c(ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, ADAM3A, EIF4EBP1, HTRA4, ADAM32, FGFR1, DDHD2, ADAM5, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, DUSP26, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.394921460871642 43 0.104762987259081 1.29352125215268 3140 0.2892566996534 4 2 2 -6.9599688804813 LTS-035 chr8 39313094 39323299 10206 * ADAM3A NA 0 NA 2.306 1 NA NA NA NA NA LTS-035 chr8 39323300 39349526 26227 * ADAM3A NA 0 NA 2.58087048864691 45 0.71386097520399 10 NA NA -5.76441030655551 LTS-035 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 1.204 1 NA NA NA NA NA LTS-035 chr8 39442068 43047593 3605526 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, IDO2, FNTA, ADAM2, DKK4, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, THAP1, C8orf4, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, ADAM18, CHRNA6) 0.384128654168161 47 0.0890730037665734 1.26907795796474 2825 0.343457703556737 3 2 1 -6.85587060565267 LTS-035 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 1.41296997555357 143 0.353097194661986 4 NA NA -5.76480710468921 LTS-035 chr8 47752736 48504629 751894 * c(LOC100287846, SPIDR, LINC00293) 0.484 1 NA 1.17766478625234 157 0.240020259842243 3 3 0 -5.76446526701723 LTS-035 chr8 48504630 54965933 6461304 * c(LYPLA1, CEBPD, PCMTD1, PXDNL, SPIDR, NPBWR1, FAM150A, MCM4, C8orf22, OPRK1, ATP6V1H, SNTG1, PRKDC, SNAI2, TCEA1, UBE2V2, EFCAB1, RGS20, ST18, RB1CC1) 0.348729021669872 42 0.137797980360401 1.2281678861454 2284 0.366503265962202 3 2 1 -6.87153247591391 LTS-035 chr8 54965934 55370619 404686 * c(LYPLA1, MRPL15, SOX17) 0.492 1 NA 1.18280901145167 87 0.204793000895338 3 3 0 -5.76442696992533 LTS-035 chr8 55370620 67972815 12602196 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, COPS5, XKR4, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, PDE7A, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, NA NA NA NA NA NA NA NA NA LTS-035 C8orf44, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, SOX17, UG0898H09, TTPA, CA8, CHCHD7, VCPIP1, NSMAF, TRIM55, DNAJC5B, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.402978372401127 86 0.0653011847767109 1.19812356007731 4721 0.296685900562475 3 2 1 -6.75129394978647 LTS-035 NA NA NA NA LTS-035 chr8 67972816 67973598 783 * COPS5 NA 0 NA 1.958 1 NA NA NA NA NA LTS-035 chr8 67973599 72316411 4342813 * c(LINC01592, NCOA2, ARFGEF1, COPS5, C8orf34, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, CSPP1, PREX2, SLCO5A1) 0.417674364158728 54 0.0466368016147093 1.283807257952 2108 0.300146314470021 4 2 2 -6.90078428400338 LTS-035 chr8 72316412 100883147 28566736 * c(MIR875, C8orf88, STAU2-AS1, C8orf89, LRRC69, MSC-AS1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, MIR378D2, MIR4661, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, CDH17, RIDA, CPQ, POP1, WWP1, STMN2, SLC26A7, OSR2, FAM92A1, NDUFAF6, DCAF4L2, RALYL, RDH10, C8orf37, VPS13B, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, ERICH5, FABP4, FABP5, HEY1, NA NA NA NA NA NA NA NA NA LTS-035 LY96, ATP6V0D2, REXO1L1P, RAD54B, KIAA1429, GEM, SNORA72, STAU2, TRIQK, DPY19L4, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, C8orf87, RBM12B, LOC392232, GDF6, C8orf59, MATN2, MMP16, MIR2052HG, FLJ46284, NBN, MTERF3, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, PDP1, CNGB3, ESRP1, TMEM70, UBE2W, LAPTM4B, RBM12B-AS1, TMEM55A, INTS8, PKIA, PAG1, JPH1, PEX2, RPL7, RPL30, ZNF704, LINC01298, SDC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNX16, NECAB1, LINC00535, FABP9, FABP12, ZBTB10, STK3, TCEB1, MIR599, TERF1, TPD52, OSGIN2, UQCRB, CA1, CA2, CA3, CALB1, PLEKHF2, ZFAND1, ZFHX4, NIPAL2, CRISPLD1, LRRCC1, TSPYL5, PSKH2, RUNX1T1, RIPK2, CPNE3, TRPA1, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, TP53INP1, PTDSS1) 0.388364415004597 226 0.0722333432024746 1.22809480965946 10745 0.333802631932146 3 2 1 -6.98852587062022 LTS-035 NA NA NA NA LTS-035 chr8 100883148 104081906 3198759 * c(MIR4471, MIR5680, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.37881167608754 44 0.0818543413166889 1.14325338302834 1896 0.289493009007429 3 2 1 -6.81203342394222 LTS-035 chr8 104081907 109455863 5373957 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, BAALC, SLC25A32, DCSTAMP, FZD6, EMC2, RIMS2) 0.411389022952678 28 0.0479278972346308 1.28137377728507 1691 2.96039200735699 3 2 1 -6.75068161979149 LTS-035 chr8 109455864 109498805 42942 * EMC2 NA 0 NA 1.26708191389355 54 0.262059120961484 3 NA NA -5.76627579986719 LTS-035 chr8 109498806 110253879 755074 * c(TMEM74, TRHR, NUDCD1, EMC2) 0.369 1 NA 1.44310692056186 87 0.258747030763439 4 4 0 -5.77718834707744 LTS-035 chr8 110253880 110659965 406086 * c(SYBU, ENY2, NUDCD1, EBAG9, PKHD1L1) 0.322199624364383 29 0.0413446704352449 1.46614500930707 838 0.457709813944948 5 4 1 -6.79698309095895 LTS-035 chr8 110659966 123683681 13023716 * c(MIR2053, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, SLC30A8, EXT1, KCNV1, MTBP, MRPL13, HAS2, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, SYBU, RAD21, HAS2-AS1, RAD21-AS1, DEPTOR, SNTB1, TAF2, TRPS1, COL14A1, DSCC1, UTP23, EIF3H, MED30) 0.380791600436081 35 0.0864198953906317 1.28487755706898 2878 0.824007672657583 4 3 1 -6.85423899863556 LTS-035 chr8 123683682 146220876 22537195 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, LINC00861, CCDC166, FAM83A-AS1, LOC100133669, LOC100288181, MIR1205, MIR1206, MIR1207, MIR1204, MIR1234, MIR1208, ASAP1-IT2, ZHX1-C8orf76, MIR4663, MIR4472-1, MIR4664, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, PTP4A3, RNF139, ZHX1, MFSD3, ADCY8, RHPN1, FBXO32, TOP1MT, ZNF572, LYPD2, TMEM71, CYC1, TMEM65, LINC00964, FAM84B, FAM91A1, CYP11B1, CYP11B2, COL22A1, EEF1D, NA NA NA NA NA NA NA NA NA LTS-035 ADCK5, TSNARE1, MAPK15, PUF60, ZHX2, DENND3, ZC3H3, EFR3A, ARC, BOP1, SCRIB, LRRC6, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, NSMCE2, ZNF707, BREA2, FAM83H, LINC01591, ZNF252P, TMED10P1, C8orf31, ZFP41, GPT, COMMD5, ATAD2, ASAP1-IT1, GRINA, CPSF1, ANXA13, HSF1, GPIHBP1, KLHL38, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, KCNQ3, MROH5, MAFA, LY6E, LY6H, MIR30B, MIR30D, C8orf82, FER1L6-AS1, LRRC24, MYC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 NDUFB9, TONSL, CYHR1, ASAP1, FAM135B, PHF20L1, VPS28, HGH1, KCNK9, THEM6, FAM49B, PLEC, CHRAC1, EXOSC4, POU5F1B, LY6K, TRMT12, WDYHV1, SLC39A4, GSDMC, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, PVT1, ZNF250, ZFAT-AS1, RPL8, LINC00051, MROH6, SCX, ST3GAL1, SLA, PYCRL, FER1L6, LYNX1, SQLE, TG, MIR661, TSTA3, CASC8, MROH1, LINC00977, OC90, LINC01300, ZNF7, ZNF16, RHPN1-AS1, DERL1, SLC52A2, GSDMD, ZNF696, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, TATDN1, MAF1, PARP10, C8orf76, TIGD5, FAM83A, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, WISP1, FOXH1, ZNF251, KIFC2, NAPRT, TBC1D31, HPYR1, RECQL4, LRRC14, MTSS1, ZNF623, KIAA0196) 0.341573648195911 339 0.0679534508629052 1.39368486360294 13910 0.344768602947135 4 3 1 -6.7586703386848 LTS-035 NA NA NA NA LTS-035 chr8 146220877 146221247 371 * c(ZNF252P, TMED10P1) NA 0 NA 0.796 1 NA NA NA NA NA LTS-035 chr8 146221248 146280802 59555 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) 0.343834478117655 2 0.0332340187157677 0.993324917563207 126 0.265332477146262 4 3 1 -6.83380589469913 LTS-035 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.989477936403899 3 0.0536935750346352 2 NA NA -5.76441213812002 LTS-035 chr9 14732 14764 33 * WASH1 0.391 1 NA 0.443 1 NA NA NA NA NA LTS-035 chr9 14765 8376801 8362037 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.317505147865923 92 0.0678519966866983 0.856102743009177 4041 0.218198786989916 1 1 0 -7.86808305664296 LTS-035 chr9 8376802 8389257 12456 * PTPRD NA 0 NA 1.085 1 NA NA NA NA NA LTS-035 chr9 8389258 14617658 6228401 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.302919109294543 18 0.0475004299946138 0.970864357651598 880 0.260194724053897 2 2 0 -6.75473487118665 LTS-035 chr9 14617659 32481455 17863797 * c(CDKN2B-AS1, MIR876, MIR873, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, TUSC1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, LINC01242, MIR31, MLLT3, LINC01239, NA NA NA NA NA NA NA NA NA LTS-035 MTAP, ACO1, CDKN2A-AS1, EQTN, BNC2, HAUS6, CNTLN, FOCAD, MIR31HG, DENND4C, KLHL9, IFNK, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, CER1, PLAA) 0.311755465594332 95 0.0715223392849906 0.875711457524109 5160 0.21914860505828 2 2 0 -8.75458796222953 LTS-035 NA NA NA NA LTS-035 chr9 32481456 32485108 3653 * DDX58 NA 0 NA 0.587 1 NA NA NA NA NA LTS-035 chr9 32485109 43861081 11375973 * c(SNORD121A, TOPORS-AS1, GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, SNORD121B, TOPORS, SIGMAR1, CREB3, UNC13B, CCL27, PTENP1, DCTN3, CLTA, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, DDX58, ANKRD18A, DNAJB5, DCAF12, GALT, FAM205A, ZNF658, SPAG8, FBXO10, B4GALT1, DNAI1, SIT1, SPINK4, LOC286297, NA NA NA NA NA NA NA NA NA LTS-035 ANXA2P2, STOML2, NUDT2, DNAJA1, KIF24, IGFBPL1, IL11RA, AQP3, AQP7, ENHO, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, TMEM215, TOMM5, FAM74A1, ZNF658B, CNTFR-AS1, SUGT1P1, AQP7P3, ANKRD18B, NDUFB6, NFX1, NPR2, PAX5, EXOSC3, UBAP1, CHMP5, TMEM8B, APTX, UBE2R2, SMU1, UBAP2, PRSS3, OR2S2, BAG1, KIAA1161, GBA2, RMRP, CCL19, CCL21, NA, NA, LOC642929, LINC01189, POLR1E, SHB, HRCT1, NOL6, NA, FGF7P3, MSMP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.326943480428307 154 0.0848000108905762 0.797274112946623 8149 0.235813639420681 1 1 0 -6.93764314162129 LTS-035 NA NA NA NA LTS-035 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.791812844854835 8 0.283172335210506 1 NA NA -5.76503366894031 LTS-035 chr9 65602571 66457106 854536 * LOC286297 0.286 1 NA 1.23779235352196 3 0.552543512615371 3 3 0 -5.76814009846934 LTS-035 chr9 66457107 68409902 1952796 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.360223999883504 23 0.0842295940031107 1.1201372552012 54 0.379272329599722 3 2 1 -6.91170245449149 LTS-035 chr9 68409903 68415252 5350 * character(0) NA 0 NA 0.864 1 NA NA NA NA NA LTS-035 chr9 68415253 117074810 48659558 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, NA NA NA NA NA NA NA NA NA LTS-035 SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF883, ZNF169, ECM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ABCA1, LPAR1, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 OR13D1, NA, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PTPN3, SLC46A2, INIP, ZNF462, RAD23B, PGM5P2, RGS3, NAA35, RORB, MIR455, SLC28A3, FRG1JP, CBWD6, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, ANKRD20A4, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.346774727031593 560 0.0723793107036824 0.802569326536865 26209 0.698537696188169 1 1 0 -6.83828771203775 LTS-035 NA NA NA NA LTS-035 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.259 1 NA NA NA NA NA LTS-035 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.232147101121819 39 0.0696340734377629 0 NA NA -6.20378888928118 LTS-035 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.532 1 NA NA NA NA NA LTS-035 chr9 117092173 123007273 5915101 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.339977425906286 43 0.070862984478596 0.8458982464093 1653 0.212485559296137 1 1 0 -7.31816522401034 LTS-035 chr9 123007274 131467865 8460592 * c(LOC100129034, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, ZBTB6, NEK6, SLC27A4, CNTRL, RPL35, SLC25A25, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, TTC16, OLFML2A, DNM1, MEGF9, ENG, AK1, NAIF1, STOM, ZBTB43, ANGPTL2, FPGS, RABGAP1, NR5A1, PSMD5-AS1, MORN5, OR1L4, CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, NA NA NA NA NA NA NA NA NA LTS-035 OR1L3, OR1L1, OR1J2, SNORA65, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, OR1J1, OR1B1, SWI5, PTGES2-AS1, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, NDUFA8, ODF2, PDCL, PBX3, COQ4, CERCAM, RAB14, RC3H2, STRBP, PPP6C, CDK5RAP2, PSMB7, PSMD5, PTGS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ZBTB26, DENND1A, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TRAF1, C5, ZNF79, C9orf16, MAPKAP1, PTGES2, MIR600HG, URM1, ARPC5L, GARNL3, DPM2, MVB12B, WDR34, LRSAM1, MRRF, RBM18, LHX2, RALGPS1) 0.353747088280165 135 0.0641184184654603 0.791175172377111 10159 0.214287369314009 1 1 0 -6.7902046077333 LTS-035 NA NA NA NA LTS-035 chr9 131467866 131468043 178 * PKN3 NA 0 NA 0.913 1 NA NA NA NA NA LTS-035 chr9 131468044 131679588 211545 * c(LOC100506100, ZER1, ENDOG, PKN3, SPOUT1, TBC1D13, LRRC8A, ZDHHC12, KYAT1) 0.292145020010328 21 0.0520534066402684 0.898455425383494 646 0.216435572160273 2 2 0 -6.75507501394604 LTS-035 chr9 131679589 131679602 14 * LRRC8A NA 0 NA 0.642 1 NA NA NA NA NA LTS-035 chr9 131679603 141069927 9390325 * c(LOC100128593, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, MAN1B1-AS1, MIR4292, MIR3621, MIR3689A, MIR3689B, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, LAMC3, TUBB4B, UBAC1, OLFM1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, NOXA1, USP20, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, MAN1B1, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, NA NA NA NA NA NA NA NA NA LTS-035 FAM69B, CRAT, DBH-AS1, ASB6, SLC34A3, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ABCA2, FCN1, FCN2, DOLK, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, ABL1, FUT7, PHYHD1, NELFB, NSMF, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, NDOR1, TOR1B, ABO, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, ANAPC2, DPP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 OBP2B, OBP2A, QRFP, GLT6D1, C9orf50, PNPLA7, CYSRT1, ENTPD8, IER5L, CFAP77, LCN15, C9orf172, LRRC26, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, MIR126, C9orf106, LCN10, STPG3, NRARP, ASS1, NOTCH1, PAEP, MRPS2, EGFL7, PRRX2, C9orf78, FBXW5, TOR4A, EXD3, PTPA, RABL6, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, REXO4, DOLPP1, PTGDS, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FAM163B, EHMT1-IT1, TUBBP5, RNF224, DDX31, MRPL41, SNAPC4, SNORA17A, SNORA17B, SURF1, SURF2, SURF4, MED22, SURF6, MIR602, TRAF2, TSC1, TTF1, RNF208, DNLZ, C8G, VAV2, CACNA1B, EHMT1, BRD3, NUP214, LHX3, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, FUBP3, SAPCD2, C9orf69, CLIC3, UAP1L1, ARRDC1, DPH7, GTF3C5, GTF3C4, TMEM203, MED27, PTGES, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.345517756297961 359 0.0797785720793275 0.799388542015899 15368 0.506181981294185 1 1 0 -6.79624710230839 LTS-035 NA NA NA NA LTS-035 chr9 141069928 141071759 1832 * TUBBP5 NA 0 NA 0.447064051650135 7 0.306549460003719 0 NA NA -5.76518295961488 LTS-035 chr10 94832 95353 522 * TUBB8 0.314 1 NA 0.981393130791279 7 0.3383067782213 2 2 0 -5.7644101408836 LTS-035 chr10 95354 8006798 7911445 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR3155B, MIR5699, NET1, ADARB2, PITRM1, ZMYND11, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, KIN, DIP2C, LARP4B, GTPBP4, GDI2, LINC00700, LINC00705, AKR1C8P, IDI1, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, PRR26, PRKCQ-AS1, ATP5C1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, IDI2-AS1, PRKCQ, SFMBT2, ADARB2-AS1, ASB13, TUBAL3, ITIH5, CALML3, NA NA NA NA NA NA NA NA NA LTS-035 AKR1E2, TAF3, FBXO18, RBM17, AKR1C3, IDI2) 0.461448940237512 130 0.0295234016717774 1.0057305535188 4180 0.237443176895073 2 1 1 -7.58013926502309 LTS-035 NA NA NA NA LTS-035 chr10 8006799 8007559 761 * TAF3 0.165 1 NA 1.06597457197179 17 0.11100725334012 2 2 0 -5.76467236529017 LTS-035 chr10 8007560 12163760 4156201 * c(CELF2, SFTA1P, PROSER2-AS1, LINC00710, PROSER2, UPF2, GATA3, GATA3-AS1, CELF2-AS2, DHTKD1, ECHDC3, TAF3, USP6NL) 0.363878704969767 13 0.199713609053128 1.01772916079394 955 0.410183565786119 2 1 1 -6.81023985024583 LTS-035 chr10 12163761 12595147 431387 * c(NUDT5, SEC61A2, DHTKD1, CAMK1D, CDC123) 0.428 1 NA 0.987052063425303 329 0.205538202221549 2 2 0 -5.76473306388314 LTS-035 chr10 12595148 17813397 5218250 * c(ST8SIA6-AS1, PPIAP30, MIR1265, MIR4480, OPTN, RPP38, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, NA, ST8SIA6, C1QL3, ACBD7, CDNF, HSPA14, PHYH, OLAH, MCM10, FRMD4A, CAMK1D, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, HACD1, PTER, NMT2) 0.453599964841415 94 0.0459730307978629 0.996538817667834 3340 0.25947305990291 2 1 1 -6.96687609105447 LTS-035 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.081 1 NA NA NA NA NA LTS-035 chr10 17842448 17905670 63223 * c(MRC1, NA, TMEM236) NA 0 NA 0.248305943226651 44 0.273467843091421 0 NA NA -6.10646760752233 LTS-035 chr10 17905671 18086893 181223 * c(MRC1, NA, TMEM236) NA 0 NA 0.481447735498961 41 0.468617368227937 0 NA NA -5.78095191701434 LTS-035 chr10 18086894 18087452 559 * c(MRC1, NA, TMEM236) NA 0 NA 0.86 1 NA NA NA NA NA LTS-035 chr10 18087453 30303947 12216495 * c(ABI1, MIR938, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, PTCHD3P1, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, NA NA NA NA NA NA NA NA NA LTS-035 PRTFDC1, NA, GPR158, ARHGAP21, KIAA1462, DNAJC1, LINC00264, BMI1, TMEM236, SVIL, MIR603, MIR604, LINC00202-2, CACNB2, THNSL1, MLLT10, LYZL1, PLXDC2, MASTL, ACBD5, SPAG6) 0.444119869866469 113 0.0843948123716531 1.0543743975302 5526 0.327373110839195 2 1 1 -7.10915946462371 LTS-035 NA NA NA NA LTS-035 chr10 30303948 38740382 8436435 * c(LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, SEPT7P9, ITGB1, KIF5B, LINC00999, MTPAP, PARD3, ZNF248, KIAA1462, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, NRP1, ANKRD30A, ARHGAP12) 0.459067861872283 84 0.0360563401808945 1.00204554087621 2903 0.553543234448317 2 1 1 -7.2288856252219 LTS-035 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 0.945 1 NA NA NA NA NA LTS-035 chr10 42379946 46148326 3768381 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.453601700191984 40 0.0783540575422443 1.00035229513318 1749 0.229715598062671 2 1 1 -6.8290734164408 LTS-035 chr10 46148327 46222724 74398 * c(FAM21C, ZFAND4) 0.231 1 NA 0.880618909297684 10 0.0775317139412425 2 2 0 -5.84799584641198 LTS-035 chr10 46222725 47915891 1693167 * c(AGAP4, NA, FAM21C, PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, NA, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.37406646243866 41 0.110585812612738 1.1324779820912 340 0.553209121154258 3 2 1 -6.78174628832031 LTS-035 chr10 47915892 49643226 1727335 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, RBP3, NA, NA, FRMPD2B) 0.424 1 NA 1.1028029902349 509 0.327870633054492 3 3 0 -5.80909181157397 LTS-035 chr10 49643227 51620411 1977185 * c(TIMM23, MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, MSMB, LRRC18, NA, OGDHL, WDFY4, ARHGAP22, DRGX, AGAP7P, SLC18A3, NA, PARGP1, NCOA4, PARG) 0.452379449157984 46 0.0749940963860064 1.02706121631725 1948 0.26980191384692 2 1 1 -6.8466201400944 LTS-035 chr10 51620412 51623055 2644 * c(TIMM23, NA, PARG) NA 0 NA 0.742 1 NA NA NA NA NA LTS-035 chr10 51623056 52065606 442551 * c(TIMM23, SGMS1, NA, FAM21A, AGAP6, NA, ASAH2, PARG) 0.393442601510532 9 0.0530403410413034 0.7538136370935 97 0.418734287544371 1 1 0 -6.8663460964528 LTS-035 chr10 52065607 63172648 11107042 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, MBL2, CISD1, PRKG1, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.432084191506359 39 0.10755040873169 1.05394511601832 2857 0.286656116765134 2 1 1 -7.13752077846857 LTS-035 chr10 63172649 71255374 8082726 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.449667266675604 61 0.065378523737694 0.976916901424328 3778 0.257375049655119 2 1 1 -6.81661867455992 LTS-035 chr10 71255375 72289836 1034462 * c(COL13A1, EIF4EBP2, C10orf35, TYSND1, TSPAN15, PALD1, NODAL, NEUROG3, PPA1, LRRC20, H2AFY2, SAR1A, NPFFR1, AIFM2) 0.40752905144671 28 0.0906756531494208 1.11111234130831 1053 0.300412135439299 3 2 1 -6.75940785357689 LTS-035 chr10 72289837 72291005 1169 * PALD1 NA 0 NA 0.862 1 NA NA NA NA NA LTS-035 chr10 72291006 74671611 2380606 * c(MIR1256, MIR4676, MICU1, ANAPC16, ADAMTS14, OIT3, UNC5B, TBATA, PALD1, C10orf105, PCBD1, ASCC1, DDIT4, DNAJB12, SLC29A3, PRF1, PSAP, CDH23, C10orf54, UNC5B-AS1, SGPL1, MCU, CHST3, SPOCK2) 0.451824325032541 54 0.0421089440927527 1.00131549896895 2328 0.229689748258733 2 1 1 -6.97646058093228 LTS-035 chr10 74671612 74767575 95964 * c(OIT3, P4HA1, PLA2G12B) 0.249 1 NA 1.0105694519293 87 0.135582310612715 2 2 0 -5.76738128054651 LTS-035 chr10 74767576 75399626 632051 * c(ECD, MSS51, CFAP70, USP54, DNAJC9, NUDT13, ANXA7, FAM149B1, DNAJC9-AS1, P4HA1, MRPS16, PPP3CB, MYOZ1) 0.263106681736783 9 0.174769848658171 0.99540851098179 1089 0.258078758947398 2 2 0 -6.75424874784816 LTS-035 chr10 75399627 75519322 119696 * c(GLUD1P3, MYOZ1, AGAP5, BMS1P4, SYNPO2L, SEC24C) 0.442 1 NA 0.996332085414723 141 0.227171698607968 2 2 0 -5.7647944173881 LTS-035 chr10 75519323 77542838 2023516 * c(ZNF503-AS2, CHCHD1, COMTD1, ADK, SAMD8, FUT11, ZSWIM8, KAT6B, ZNF503-AS1, AP3M1, DUPD1, C10orf55, DUSP13, PLAU, VCL, VDAC2, CAMK2G, C10orf11, ZNF503, NDST2, SEC24C) 0.455568646225878 25 0.0495754307427917 0.967555902564405 1643 0.194107905573487 2 1 1 -6.95536577523067 LTS-035 chr10 77542839 79745884 2203046 * c(DLG5-AS1, POLR3A, KCNMA1, C10orf11, DLG5) 0.431765098208407 10 0.148890116081178 1.12237687516544 675 0.28189261803387 3 2 1 -6.79671403198461 LTS-035 chr10 79745885 81146064 1400180 * c(LINC00856, PPIF, POLR3A, ZCCHC24, ZMIZ1-AS1, LINC00595, ZMIZ1, RPS24) 0.471255817500173 14 0.0236857865294037 1.00083132396342 540 0.219145041106192 2 1 1 -8.43045335717065 LTS-035 chr10 81146065 81316528 170464 * c(EIF5AL1, ZCCHC24, SFTPA2) 0.263 1 NA 1.00054730072905 141 0.211982039106498 2 2 0 -5.76539846256926 LTS-035 chr10 81316529 85972043 4655515 * c(BMS1P21, NRG3, DYDC1, TMEM254-AS1, PLAC9, GHITM, ANXA11, SH2D4B, C10orf99, MAT1A, LINC00857, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P, CDHR1) 0.315609319369438 9 0.149079210861579 1.01369531166872 1258 0.291320292171175 2 2 0 -6.78213906682237 LTS-035 chr10 85972044 85974236 2193 * CDHR1 0.485 1 NA 1.05997544109531 21 0.234449882958059 2 2 0 -5.76455772081526 LTS-035 chr10 85974237 116391761 30417525 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, FAS-AS1, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4679-1, MIR4483, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, ACTR1A, SMNDC1, NPM3, RPP30, SORBS1, ERLIN1, LBX1, MGEA5, ADIRF, LDB3, NA NA NA NA NA NA NA NA NA LTS-035 HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ADD3, ABCC2, COL17A1, COX15, CPN1, ACSM6, LIPJ, CFL1P1, VTI1A, HECTD2, FGFBP3, ADRA2A, ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, LINC00858, DNTT, DUSP5, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, WAPL, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CALHM1, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, PDCD4, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, RBM20, PDCD4-AS1, FLJ37201, GRID1, BLNK, HABP2, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, VWA2, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, NHLRC2, KIF11, SLC16A12, CC2D2B, GUCY2GP, ABLIM1, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf62, LINC00863, IFIT1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MIR346, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, ACSL5, PGAM1, PITX3, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CCDC186, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, AS3MT, MIR146B, STAMBPL1, GPAM, SEMA4G, ALDH18A1, ACTA2, RBP4, RGR, AVPI1, HPSE2, SCD, MMS19, SFRP5, FAM25A, NOC3L, LIPK, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LIPN, LINC00865, ZDHHC6, RPL13AP6, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, TNKS2, SHOC2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, CASP7, PCGF6, LOXL4, ZDHHC16, PCGF5, LZTS2, LCOR, MRPL43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 AFAP1L2, PYROXD2, USMG5, ATAD1, ARHGAP19, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, SMC3, NEURL1, LGI1, NOLC1, CDHR1, BBIP1, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SH3PXD2A, SLK, ZNF518A, DCLRE1A) 0.447267431556926 412 0.0710520424987906 0.999388220356968 23588 0.261647631587453 2 1 1 -6.89189508594608 LTS-035 NA NA NA NA LTS-035 chr10 116391762 116417676 25915 * ABLIM1 NA 0 NA 1.859 1 NA NA NA NA NA LTS-035 chr10 116417677 116624162 206486 * c(ABLIM1, FAM160B1) 0.377899873820083 6 0.0389277107812246 1.39154158303675 156 0.300800763939248 6 4 2 -6.82498306744219 LTS-035 chr10 116624163 119308575 2684413 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, TRUB1, C10orf82, EMX2OS, EMX2, HSPA12A, ATRNL1, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, FAM160B1, SLC18A2) 0.385612619374517 24 0.134695409204878 1.07724195194514 1650 0.34265219799958 3 2 1 -6.85728412728976 LTS-035 chr10 119308576 121652470 2343895 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.4562800863621 25 0.0351465029080656 0.962251458577329 1514 0.581828744486597 2 1 1 -7.17043054020189 LTS-035 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 1.183 1 NA NA NA NA NA LTS-035 chr10 121657875 133786586 12128712 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, GLRX3, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, NA NA NA NA NA NA NA NA NA LTS-035 LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.444211442312134 160 0.0569817580872772 1.02417079051569 5708 0.269868535824669 2 1 1 -6.98803686939751 LTS-035 NA NA NA NA LTS-035 chr10 133786587 133951544 164958 * c(JAKMIP3, BNIP3) 0 1 NA 1.06219213171119 57 0.594476380769861 2 2 0 -5.76623020300295 LTS-035 chr10 133951545 134143986 192442 * c(DPYSL4, JAKMIP3, STK32C) 0.332826491665957 12 0.165334623956351 1.08581165006334 254 0.310278557478836 2 2 0 -6.77700509109852 LTS-035 chr10 134143987 134144005 19 * STK32C 0.444 1 NA 1.194 1 NA NA NA NA NA LTS-035 chr10 134144006 134693137 549132 * c(C10orf91, PWWP2B, STK32C, INPP5A, CFAP46, LRRC27, NKX6-2) 0.466977751888832 23 0.0252969713383496 1.02831896572377 535 0.278235662426884 2 1 1 -8.04911277857528 LTS-035 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.592 1 NA NA NA NA NA LTS-035 chr10 134694406 134756359 61954 * CFAP46 0.469859936026948 3 0.0392598183048945 0.543074508285023 169 0.199619548856604 0 0 0 -7.42375042869837 LTS-035 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.577 1 NA NA NA NA NA LTS-035 chr10 134884462 135381276 496815 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.461436719781009 32 0.0391804011036789 1.02380516605438 1348 0.253690755362096 2 1 1 -7.21577045035961 LTS-035 chr10 135381277 135381592 316 * c(SPRNP1, SYCE1) 0.496 1 NA 1.02646009089976 7 0.196343115610451 2 2 0 -5.76442069382699 LTS-035 chr10 135381593 135473026 91434 * c(SPRNP1, FRG2B, SYCE1) 0.309809323052804 9 0.0656152505985545 1.36712109414908 47 0.931150573419401 5 4 1 -6.73441048206455 LTS-035 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.427 1 NA NA NA NA NA LTS-035 chr11 193025 193096 72 * SCGB1C1 0.464 1 NA 0.402 1 NA NA NA NA NA LTS-035 chr11 193097 840023 646927 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, TALDO1, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.428292435726604 79 0.0753643190821578 0.90749635538296 2539 0.29588371729975 2 1 1 -6.76006158159318 LTS-035 chr11 840024 1016869 176846 * c(AP2A2, MUC6, POLR2L, CHID1, TSPAN4) 0.358 1 NA 0.925532459980973 398 0.179010152975456 2 2 0 -5.77518420978277 LTS-035 chr11 1016870 1016879 10 * MUC6 NA 0 NA 0.791060717674167 2 0.00282842712474604 1 NA NA -5.76456866450774 LTS-035 chr11 1016880 1016894 15 * MUC6 0.244 1 NA 2.633 1 NA NA NA NA NA LTS-035 chr11 1016895 1253980 237086 * c(MUC2, MUC6, MUC5B) 0.366054469445459 112 0.0920493527045863 1.05000400264473 784 0.410214699318585 1 1 0 -6.80778491790813 LTS-035 chr11 1253981 1258217 4237 * MUC5B 0.231 1 NA 0.961578984258313 41 0.216808660163637 2 2 0 -5.76442941995218 LTS-035 chr11 1258218 1260220 2003 * MUC5B 0.203212465737801 10 0.130136509524081 1.21826212458049 17 0.224764893506395 4 4 0 -6.73473469237342 LTS-035 chr11 1260221 1263648 3428 * MUC5B 0.462 1 NA 1.00458189873276 60 0.267391213425103 2 2 0 -5.76442791403039 LTS-035 chr11 1263649 1507991 244343 * c(TOLLIP-AS1, TOLLIP, MUC5B, MOB2, BRSK2) 0.405883409958417 9 0.0756000073486181 1.05931395183584 438 0.287410841257167 3 2 1 -6.75435212326313 LTS-035 chr11 1507992 1509159 1168 * MOB2 NA 0 NA 0.871 1 NA NA NA NA NA LTS-035 chr11 1509160 3187772 1678613 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, CTSD, DUSP8, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MOB2, CARS, SYT8, CD81) 0.44476244321525 73 0.0428609881764075 0.936684003824556 2023 0.217268711218784 2 1 1 -6.89864919613971 LTS-035 chr11 3187773 3681051 493279 * c(OR7E12P, OSBPL5, MRGPRE, ART5, MRGPRG-AS1, MRGPRG, ART1, TSSC2, TRPC2, ZNF195) 0.49 1 NA 0.944577976645428 249 0.201068355087371 2 2 0 -5.77426724721193 LTS-035 chr11 3681052 3829591 148540 * c(PGAP2, ART1, NUP98, CHRNA10) 0.447579489166824 9 0.0450530551436612 0.932153818706991 330 0.23347559901962 2 1 1 -6.88166697078958 LTS-035 chr11 3829592 3832385 2794 * PGAP2 NA 0 NA 1.096 1 NA NA NA NA NA LTS-035 chr11 3832386 4968390 1136005 * c(LOC100506082, MIR4687, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, TRIM68, RRM1, TRIM21, STIM1, OR51G1, OR51G2, OR51E2) 0.451966816956501 63 0.0653019141354933 1.04115773084666 1155 0.348271351624981 2 1 1 -6.85279156657984 LTS-035 chr11 4968391 4975952 7562 * character(0) NA 0 NA 0.227 1 NA NA NA NA NA LTS-035 chr11 4975953 4976962 1010 * OR51A2 NA 0 NA 0.265654191658158 40 0.226749606337826 0 NA NA -5.77152203046352 LTS-035 chr11 4976963 5776975 800013 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, UBQLNL, OR52A1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, TRIM5) 0.435267378000824 72 0.0446177996299511 1.01753836912738 1228 0.360570796488992 2 1 1 -6.76868179930216 LTS-035 chr11 5776976 5809500 32525 * c(TRIM22, OR52N5, OR52N1, TRIM5) NA 0 NA 0.210036940567908 39 0.253162078097757 0 NA NA -6.0613817538058 LTS-035 chr11 5809501 5809505 5 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 0.967 1 NA NA NA NA NA LTS-035 chr11 5809506 6220376 410871 * c(TRIM22, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.419821842400309 9 0.0628001680818699 0.962913395675437 349 0.278852006934206 2 1 1 -6.73839148001609 LTS-035 chr11 6220377 6221249 873 * OR52W1 0.456 1 NA 1.00084993248695 19 0.0739604367133565 2 2 0 -5.76445288790126 LTS-035 chr11 6221250 17396772 11175523 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, LOC283299, APBB1, HPX, NLRP10, NLRP14, NA NA NA NA NA NA NA NA NA LTS-035 OR2AG2, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, GVINP1, INSC, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, CALCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.439685538169 283 0.0571630070739899 0.93294073425734 9820 0.254479640703858 2 1 1 -7.01130508068319 LTS-035 NA NA NA NA LTS-035 chr11 17396773 17396862 90 * NCR3LG1 NA 0 NA 1.139 1 NA NA NA NA NA LTS-035 chr11 17396863 17668713 271851 * c(USH1C, OTOG, NCR3LG1, KCNJ11, ABCC8) 0.404897510966996 21 0.103417415867744 1.04672232416943 816 0.420275725727112 3 2 1 -6.74648723234123 LTS-035 chr11 17668714 17741069 72356 * character(0) NA 0 NA 0.962 1 NA NA NA NA NA LTS-035 chr11 17741070 19256054 1514985 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, KCNC1, LDHA, LDHC, MYOD1, LOC494141, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, E2F8, CSRP3, PTPN5) 0.426902463619385 33 0.0749627685365653 0.904636474113858 2057 0.2367967608899 2 1 1 -6.83515984060338 LTS-035 chr11 19256055 19256285 231 * E2F8 NA 0 NA 1.215 1 NA NA NA NA NA LTS-035 chr11 19256286 31131909 11875624 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, DBX1, ARL14EP, MUC15, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, GAS2, LUZP2, DCDC1, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.420132702368441 70 0.0800383500212247 0.996474290572318 3403 0.257831346060058 2 1 1 -6.76539096129129 LTS-035 chr11 31131910 31149039 17130 * c(DCDC5, DCDC1) NA 0 NA 0.95 1 NA NA NA NA NA LTS-035 chr11 31149040 47447583 16298544 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, EIF3M, CHRM4, C11orf74, LARGE2, DNAJC24, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, IMMP1L, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, DCDC1, CD82, DKFZp779M0652, C11orf96, ACCSL, NA NA NA NA NA NA NA NA NA LTS-035 ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, DKFZp686K1684, MYBPC3, CCDC73, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, C11orf49, ZNF408, QSER1, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, DEPDC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.436698379517504 221 0.0698999061066216 0.936884804874499 9124 0.228731909295217 2 1 1 -7.10423613095224 LTS-035 NA NA NA NA LTS-035 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 0.807 1 NA NA NA NA NA LTS-035 chr11 47447717 48286256 838540 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.415502227800113 22 0.0520600926502561 0.88030133057438 1177 0.513329868980065 2 1 1 -6.77562322811516 LTS-035 chr11 48286257 48328644 42388 * c(OR4S1, OR4X1) 0.416 1 NA 1.21259522966996 23 0.543444776676014 3 3 0 -5.76447095494 LTS-035 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 0.857451415799348 4 0.0991711483581121 1 NA NA -5.77436920320973 LTS-035 chr11 48346420 48346423 4 * character(0) 0.398 1 NA 2.032 1 NA NA NA NA NA LTS-035 chr11 48346424 48387983 41560 * c(OR4C3, OR4C45) 0.326057508548456 104 0.0698590146424286 1.76103424670202 175 1.10901793269588 11 8 3 -6.74261198557878 LTS-035 chr11 48387984 48387985 2 * character(0) NA 0 NA 0.981 1 NA NA NA NA NA LTS-035 chr11 48387986 48388641 656 * character(0) 0.353103304340354 2 0.0197989898732233 1.3434200633186 4 0.635705054775142 4 3 1 -6.73303191401246 LTS-035 chr11 48388642 48388657 16 * character(0) 0.358 1 NA 1.312 1 NA NA NA NA NA LTS-035 chr11 48388658 51516257 3127600 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.418738821037661 36 0.0529768068449965 1.03133001185862 485 0.475850763091508 2 1 1 -6.7635289130694 LTS-035 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.898528506482193 6 0.11584242170581 2 NA NA -5.76825457559821 LTS-035 chr11 55035776 55136500 100725 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) NA 0 NA 0.850053264465116 43 0.230899248377814 1 NA NA -5.77302685937754 LTS-035 chr11 55136501 55321804 185304 * OR4C15 NA 0 NA 1.243 1 NA NA NA NA NA LTS-035 chr11 55321805 55322298 494 * OR4C15 0.443 1 NA 1.21161465288432 9 0.858454926662496 3 3 0 -5.7644104011482 LTS-035 chr11 55322299 56467926 1145628 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, TRIM51) 0.403346886879809 51 0.109404570288448 1.12537687981449 994 0.41007651306929 3 2 1 -6.74246792727135 LTS-035 chr11 56467927 56467945 19 * c(OR8U8, OR9G9) 0.206 1 NA 2.652 1 NA NA NA NA NA LTS-035 chr11 56467946 56468835 890 * c(OR8U8, OR9G9) 0.318337864566955 25 0.112307657797676 1.59659240503731 45 0.688895234004666 8 6 2 -6.73343948819723 LTS-035 chr11 56468836 56468883 48 * OR8U8 NA 0 NA 0.906 1 NA NA NA NA NA LTS-035 chr11 56468884 56510623 41740 * c(OR9G4, OR8U8) 0.454 1 NA 0.974764056537002 12 0.199416193379119 2 2 0 -5.7644276056936 LTS-035 chr11 56510624 58392951 1882328 * c(TMX2-CTNND1, PRG3, CLP1, CNTF, CTNND1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, ZDHHC5, TIMM10, SELENOH, OR9G4, SLC43A3, RTN4RL2, ZFP91-CNTF, OR5AK2, OR5B2, OR5B12, MIR130A, OR5B3, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, ZFP91, OR10W1, SLC43A1, TNKS1BP1, UBE2L6, LPXN) 0.450023572058555 43 0.0776341549545294 1.03264774779718 2253 0.234140406870144 2 1 1 -6.84985275984449 LTS-035 chr11 58392952 58604806 211855 * c(GLYAT, CNTF, GLYATL2, ZFP91-CNTF) 0.475 1 NA 1.0132253923223 80 0.237784966947722 2 2 0 -5.76692171192357 LTS-035 chr11 58604807 59710479 1105673 * c(MIR3162, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, DTX4, GIF, LOC283194, FAM111B, OR5AN1, OR4D10, OR4D9, OR10V1, OSBP, MRPL16, FAM111A, STX3, TCN1, OR10V2P, GLYATL1) 0.216222526931645 9 0.165988286065948 1.01896994731021 1150 0.225058765837664 2 2 0 -6.88490433611816 LTS-035 chr11 59710480 59814173 103694 * OOSP2 0.492 1 NA 1.01803800391825 29 0.216848435185418 2 2 0 -5.76633717964711 LTS-035 chr11 59814174 60568650 754477 * c(OOSP2, MS4A15, MS4A2, MS4A6E, LINC00301, MS4A10, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, MS4A8, MS4A14, MS4A1, MS4A3) 0.447382461680678 34 0.0851390233540573 1.05278639158702 843 0.374545123578789 2 1 1 -6.79005798338928 LTS-035 chr11 60568651 60617913 49263 * c(MS4A10, CCDC86) 0.5 1 NA 0.875224114630349 43 0.103701745639726 2 2 0 -5.79929098077897 LTS-035 chr11 60617914 61730007 1112094 * c(MIR1908, MIR4488, PTGDR2, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, TKFC, DKFZP434K028, PRPF19, LRRC10B, FADS1, FADS3, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, SYT7, CD5, CD6, FADS2) 0.45689618752816 35 0.0829506586152629 1.02873199159429 2786 0.24108672535929 2 1 1 -6.84641499584307 LTS-035 chr11 61730008 65292678 3562671 * c(NAALADL1, TMEM262, MIR1237, ARL2-SNX15, HNRNPUL2-BSCL2, LOC100996455, RASGRP2, RTN3, CDC42EP2, NXF1, TAF6L, SCGB1D2, SCGB1D1, EHD1, STIP1, PLA2G16, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, HRASLS5, COX8A, C11orf84, GPHA2, EEF1G, MARK2, ESRRA, FAU, TIGD3, LRRN4CL, HNRNPUL2, FKBP2, ATG2A, GANAB, SNHG1, POLA2, FLRT1, FTH1, EML3, PRDX5, TEX40, ATL3, B3GAT3, PPP1R14B, BSCL2, GNG3, MAJIN, SLC25A45, NEAT1, NA NA NA NA NA NA NA NA NA LTS-035 CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, SAC3D1, DNAJC4, INCENP, TMEM179B, MALAT1, SLC22A25, SLC22A10, SPDYC, ARL2, SCGB1D4, MIR192, MIR194-2, MEN1, SCGB2A1, SCGB2A2, SLC22A20, KCNK4, UBXN1, TRMT112, PLCB3, POLR2G, WDR74, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, SCYL1, PYGM, MAP4K2, RARRES3, DPF2, ROM1, TUT1, SLC3A2, C11orf95, STX5, SNORA57, TM7SF2, SCGB1A1, VPS51, MRPL49, ZNHIT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 VEGFB, BEST1, METTL12, SF1, ZFPL1, AHNAK, TMEM223, LBHD1, UQCC3, NAA40, ZBTB3, ASRGL1, INTS5, CAPN1, FERMT3, TRPT1, FRMD8, NUDT22, SYVN1, LGALS12, RPS6KA4, MTA2, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2) 0.437649970049762 114 0.0823447116047269 0.972605628856136 8633 0.232359374359579 2 1 1 -6.74893901856313 LTS-035 NA NA NA NA LTS-035 chr11 65292679 65429479 136801 * c(MIR4489, MIR4690, KCNK7, SSSCA1, FAM89B, SSSCA1-AS1, EHBP1L1, PCNX3, LTBP3, MAP3K11, SCYL1, RELA, SIPA1) 0.439649452842344 13 0.0377325269461719 1.07604794408754 980 0.229900365362903 2 1 1 -6.83336731331426 LTS-035 chr11 65429480 65429483 4 * RELA NA 0 NA 0.881 1 NA NA NA NA NA LTS-035 chr11 65429484 66130462 700979 * c(KAT5, DRAP1, CFL1, YIF1A, SF3B2, CCDC85B, B4GAT1, CATSPER1, CST6, CTSW, SNX32, TSGA10IP, CNIH2, TMEM151A, BRMS1, EFEMP2, SLC29A2, OVOL1, PACS1, CD248, RELA, KLC2, MUS81, FOSL1, RAB1B, C11orf68, RNASEH2C, EIF1AD, BANF1, GAL3ST3, SART1, AP5B1, FIBP, RIN1) 0.443462509317416 35 0.0858083853221621 0.963187659279165 2097 0.214226114577377 2 1 1 -6.76281065223672 LTS-035 chr11 66130463 82924358 16793896 * c(KCNE3, MIR708, LOC100129216, LOC100130987, LOC100133315, KCTD21-AS1, MIR548K, SNORA70E, MIR4300, MIR3165, MIR3664, RAB30-AS1, TPBGL, RBM14-RBM4, NDUFC2-KCTD14, MIR4696, MIR4691, MIR4692, IL18BP, DPP3, MIR5579, SHANK2-AS1, CDK2AP2, TCIRG1, RBM14, POLD3, STARD10, NEU3, CHKA, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, CLNS1A, CPT1A, XRRA1, GRK2, DHCR7, B3GNT6, CTTN, MRPL21, TPCN2, GDPD4, DDIAS, ORAOV1, SHANK2-AS3, NA NA NA NA NA NA NA NA NA LTS-035 LRTOMT, FAM181B, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, KDM2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, DEFB108B, PELI3, RNF169, ZDHHC24, C11orf86, NUDT8, CHRDL2, ANAPC15, TSKU, C2CD3, TENM4, LRRC32, MYEOV, NPAS4, RAB30, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, AAMDC, GSTP1, RHOD, SLC29A2, ANKRD13D, ANKRD42, OR2AT4, TBX10, IGHMBP2, INPPL1, TBC1D10C, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 GPR152, DOC2GP, GUCY2EP, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFC2, NDUFV1, NDUFS8, NUMA1, OMP, P2RY2, P2RY6, PAK1, PC, GAL, KMT5B, COA4, PDE2A, PPME1, CABP2, PCF11, MRPL48, RSF1, C11orf24, SSH3, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP6R3, RNF121, ACER3, PRCP, THAP12, EMSY, CABP4, CORO1B, USP35, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PLEKHB1, RAB6A, RAD9A, RBM4, CCND1, SNORD15A, RPS3, RPS6KB2, FAM86C2P, MRPL11, KCTD14, SPTBN2, THRSP, CAPN5, UCP2, UCP3, UVRAG, WNT11, LRFN4, ALG8, C11orf80, NARS2, MOGAT2, TMEM134, PAAF1, GDPD5, CLPB, UNC93B1, RBM4B, DGAT2, RELT, PPFIA1, SERPINH1, CTSF, FADD, ACTN3, ATG16L2, AIP, SYT12, ACY3, INTS4, PITPNM1, TESMIN, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19, CCS, RCE1) 0.454130897358841 281 0.0485073467042962 1.00944065473974 15510 0.239186865364791 2 1 1 -7.09062618695637 LTS-035 NA NA NA NA LTS-035 chr11 82924359 82926091 1733 * ANKRD42 0.412 1 NA 1.19234294491455 31 0.161264985966963 3 3 0 -5.76441392034174 LTS-035 chr11 82926092 93085537 10159446 * c(NAALAD2, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, PRSS23, SLC36A4, FAT3, TRIM64, DEUP1, DLG2, FOLH1B, CCDC83, CCDC89, RAB38, CHORDC1, GRM5, ANKRD42, TRIM77, MTNR1B, NOX4, HIKESHI, SYTL2, TMEM126B, TRIM49, CREBZF, CCDC90B, CCDC81, TRIM64B, TRIM49C, UBTFL1, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.413879883296172 47 0.144900220860944 0.999688954212191 3525 0.264503682782103 2 1 1 -6.77127403056355 LTS-035 chr11 93085538 93122326 36789 * DEUP1 0.454 1 NA 1.00148888362765 47 0.241355268022899 2 2 0 -5.76458988333976 LTS-035 chr11 93122327 93583790 461464 * c(MIR1304, DEUP1, C11orf54, VSTM5, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.264922609280898 9 0.203508599326908 1.01925289330921 726 0.275075555495431 2 2 0 -6.7517035424172 LTS-035 chr11 93583791 93845352 261562 * HEPHL1 0.457 1 NA 1.03121213530532 102 0.169360848402049 2 2 0 -5.77862294850136 LTS-035 chr11 93845353 95826197 1980845 * c(GPR83, FAM76B, SESN3, PIWIL4, AMOTL1, ENDOD1, PANX1, FUT4, HEPHL1, IZUMO1R, KDM4E, MRE11A, CWC15, ANKRD49, KDM4D, C11orf97, MAML2, MTMR2, CEP57) 0.435126952240941 36 0.0842078447124204 1.00463692575784 1856 0.255304339198562 2 1 1 -6.75266396672315 LTS-035 chr11 95826198 101827599 6001402 * c(MIR1260B, MIR3920, JRKL-AS1, LOC101054525, ARHGAP42, ANGPTL5, PGR, CNTN5, CEP126, TRPC6, CCDC82, TMEM133, MAML2, JRKL) 0.445824672017916 32 0.0907174750654915 1.07488341721202 1112 0.27430881659579 2 1 1 -7.14775478185464 LTS-035 chr11 101827600 125616379 23788780 * c(LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4493, MIR4491, MIR4492, MIR4693, LOC100652768, RBM7, MPZL2, YAP1, HYOU1, ATP5L, CHEK1, TREH, CARD16, TMEM123, PANX3, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, PATE1, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, TMEM218, NA NA NA NA NA NA NA NA NA LTS-035 SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, HEPACAM, OAF, FDX1, CEP164, EXPH5, PHLDB1, SIK2, ARHGEF12, SIK3, VSIG2, BACE1, TRIM29, CADM1, SLC37A4, ANKK1, RNF214, POU2F3, HINFP, REXO2, OR8G2, OR8B8, TIMM8B, OR8B2, LINC00900, BCL9L, FOXR1, CCDC153, OR8D1, OR8D2, OR8B4, GRIA4, GRIK4, GUCY1A2, H2AFX, HMBS, BIRC2, BIRC3, HSPA8, HSPB2, APOA1, HTR3A, APOA4, CCDC84, TMEM225, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 OR8D4, C11orf53, LOC341056, APOC3, PLET1, IL10RA, IL18, STT3A, ARCN1, ACAT1, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, C11orf87, COLCA1, C11orf88, MIR100HG, VWA5A, MIRLET7A2, MIR100, MIR125B1, MIR34B, MIR34C, DDI1, BLID, MCAM, KMT2A, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, NRGN, PAFAH1B2, SIDT2, TRAPPC4, SPA17, FXYD6, SIAE, C11orf71, POU2AF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ROBO4, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, SCN3B, VPS11, ACRV1, TEX12, CRTAM, TMPRSS4, IFT46, DSCAML1, GRAMD1B, CEP126, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, RPS25, SC5D, SCN2B, SCN4B, PKNOX2, SDHD, MMP27, ABCG4, HEPN1, ROBO3, CXCR5, LOC643733, LOC643923, CLDN25, C11orf1, LOC649133, RPL23AP64, SLN, SORL1, TAGLN, TECTA, THY1, UPK2, ZBTB16, ZNF202, RNF26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DYNC2H1, NLRX1, MSANTD2, ALG9, CLMP, PDZD3, C11orf63, CCDC15, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, BCO2, TMPRSS13, DCUN1D5, MSANTD4, BUD13, TMEM25, TBRG1, UBASH3B, C11orf70, DIXDC1, ZC3H12C, CBL, ZPR1, ESAM, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, UBE4A, EI24, FEZ1, C2CD2L) 0.442363044111229 374 0.0784519891796391 0.956237855772227 20730 0.36333549019855 2 1 1 -6.82560084756996 LTS-035 NA NA NA NA LTS-035 chr11 125616380 125618729 2350 * PATE1 0.36 1 NA 0.9771731822262 25 0.256725456470526 2 2 0 -5.76441030214688 LTS-035 chr11 125618730 125659371 40642 * c(PATE3, PATE1, PATE2) 0.291297614293571 9 0.217709924236611 1.11565887672491 85 0.576597924126026 2 2 0 -6.73443027069473 LTS-035 chr11 125659372 125659423 52 * PATE3 0.477 1 NA 1.718 1 NA NA NA NA NA LTS-035 chr11 125659424 134244123 8584700 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, VPS26B, GLB1L3, TIRAP, TMEM45B, ADAMTS15, ETS1, C11orf45, HYLS1, SPATA19, IGSF9B, FLI1, NCAPD3, ACAD8, KIRREL3-AS3, C11orf44, MIR4697HG, DCPS, ZBTB44, THYN1, DDX25, APLP2, KCNJ1, KCNJ5, PATE4, ST3GAL4-AS1, SNX19, LINC00167, NFRKB, OPCML, NTM, CDON, FOXRED1, PRDM10, TP53AIP1, ST3GAL4, SRPRA, ST14, FAM118B, PUS3, JAM3, KIRREL3, RPUSD4, BARX2, NA NA NA NA NA NA NA NA NA LTS-035 GLB1L2, ARHGAP32) 0.434162184075489 94 0.0769540689947145 0.965137698569053 4882 0.253178907489786 2 1 1 -6.75965191250419 LTS-035 NA NA NA NA LTS-035 chr11 134244124 134856681 612558 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 1.04135842205416 61 0.191050050661923 2 NA NA -5.80142670384945 LTS-035 chr12 90914 6138595 6047682 * c(LINC00940, LOC100288778, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, IQSEC3, NDUFA9, NINJ2, NTF3, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, NA NA NA NA NA NA NA NA NA LTS-035 RHNO1, NRIP2, CCDC77, CRACR2A, DYRK4, CCND2, CACNA2D4) 0.447432888890643 150 0.0741392365634439 1.0283259659959 5321 0.274068276058278 2 1 1 -6.8968204382599 LTS-035 NA NA NA NA LTS-035 chr12 6138596 6153514 14919 * VWF 0.487 1 NA 1.08402148625327 21 0.13052941649846 3 3 0 -5.76824890599202 LTS-035 chr12 6153515 7342636 1189122 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, CLSTN3, NCAPD2 NA NA NA NA NA NA NA NA NA LTS-035 ) 0.449371179937162 93 0.0586269336103597 1.00612542503842 3555 0.224246370807769 2 1 1 -6.84322578910295 LTS-035 NA NA NA NA LTS-035 chr12 7342637 7360229 17593 * PEX5 0.372 1 NA 1.01473446992812 63 0.253923293367289 2 2 0 -5.76460974696751 LTS-035 chr12 7360230 7805500 445271 * c(CD163L1, APOBEC1, ACSM4, PEX5, CD163) 0.421606693359867 11 0.0407736545957179 1.05825608069614 428 0.289427842656424 2 1 1 -6.7564848558395 LTS-035 chr12 7805501 7807147 1647 * APOBEC1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-035 chr12 7807148 9590665 1783518 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CLEC6A, GDF3) 0.395663619458547 39 0.123477152896596 0.962992170059585 2152 0.279912563874111 2 1 1 -6.77129805686593 LTS-035 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.076 1 NA NA NA NA NA LTS-035 chr12 9633155 9717889 84735 * character(0) NA 0 NA 0.0710461912706497 94 0.080014378283518 0 NA NA -13.3736621140521 LTS-035 chr12 9717890 10573094 855205 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.411856072252703 13 0.136353988780711 0.923494243294229 1078 0.291087671424734 2 1 1 -6.75998583561002 LTS-035 chr12 10573095 10588456 15362 * c(KLRC2, KLRC3) 0.441 1 NA 1.60151126062298 59 0.56880744698669 5 5 0 -5.76441417234023 LTS-035 chr12 10588457 11035320 446864 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R10, MAGOHB, STYK1, PRB4, PRH1, YBX3) 0.438778285456424 9 0.0427447202717612 0.920073612526095 478 0.282253929077101 2 1 1 -6.80633604677156 LTS-035 chr12 11035321 11035507 187 * c(PRH1-PRR4, PRB4, PRH1) NA 0 NA 1.069 1 NA NA NA NA NA LTS-035 chr12 11035508 11150046 114539 * c(PRH1-PRR4, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH1, PRH2) 0.449890873694785 5 0.019824227601599 1.02233192706285 161 0.230456716237575 2 1 1 -7.54622024068476 LTS-035 chr12 11150047 11174202 24156 * c(PRH1-PRR4, TAS2R20, PRB4) 0.277 1 NA 1.02782656012505 9 0.383004170270305 2 2 0 -5.76463529098906 LTS-035 chr12 11174203 11286820 112618 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.272170471942494 56 0.0998030267869876 1.19414794314892 170 0.49044236284951 2 2 0 -6.77501147481195 LTS-035 chr12 11286821 11287271 451 * c(PRH1-PRR4, TAS2R30, PRB4) 0.433 1 NA 0.937623834937899 9 0.0713701229117931 2 2 0 -5.7645132850922 LTS-035 chr12 11287272 32261239 20973968 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, NA NA NA NA NA NA NA NA NA LTS-035 SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.442911726053584 237 0.0869370383121019 1.01596298114284 11002 0.262987743397587 2 1 1 -6.98642058461243 LTS-035 NA NA NA NA LTS-035 chr12 32261240 32490822 229583 * BICD1 0 1 NA 1.05971871028621 72 0.373318426932457 2 2 0 -5.77046317386764 LTS-035 chr12 32490823 32520730 29908 * BICD1 NA 0 NA 1.04293152396225 12 0.1635864149357 2 NA NA -5.76701395282558 LTS-035 chr12 32520731 32530357 9627 * BICD1 NA 0 NA 0.855 1 NA NA NA NA NA LTS-035 chr12 32530358 33592590 1062233 * c(DNM1L, FGD4, SYT10, YARS2, PKP2, BICD1) 0.327400091295351 24 0.0520665683162611 0.838863070382407 676 0.240351669719541 1 1 0 -7.14226994977605 LTS-035 chr12 33592591 33592803 213 * SYT10 NA 0 NA 0.88597235556192 5 0.0965064764666082 2 NA NA -5.76454883754248 LTS-035 chr12 34175192 34182671 7480 * ALG10 NA 0 NA 1.701696767937 63 0.479384691599223 6 NA NA -5.76445311810705 LTS-035 chr12 38710341 39695445 985105 * c(ALG10B, CPNE8, KIF21A) 0.458 1 NA 1.02520453506863 227 0.238110631839918 2 2 0 -5.78561938019738 LTS-035 chr12 39695446 54105310 14409865 * c(PCED1B-AS1, TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, MIR4701, MIR4698, LOC100652999, YAF2, TUBA1B, RAPGEF3, MCRS1, ATF7, ADCY6, GALNT6, KRT71, LARP4, SLC2A13, LRRK2, FAM186A, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, KRT74, CNTN1, COL2A1, ASB8, KRT72, PRICKLE1, BCDIN3D, KRT80, GRASP, KRT78, ANO6, ARID2, EIF4B, CELA1, ABCD2, FAIM2, DDN, TNS2, KCNH3, ANP32D, LINC00935, PRPF40B, METTL7A, LETMD1, AMHR2, NA NA NA NA NA NA NA NA NA LTS-035 RND1, GPD1, LOC283332, LOC283335, ZNF740, C12orf80, LINC00592, C12orf40, GXYLT1, TMPRSS12, KRT6C, RACGAP1, SENP1, PDZRN4, NR4A1, KRT73, C1QL4, KRT79, ANKRD33, H1FNT, OR8S1, AMIGO2, IGFBP6, AQP2, AQP5, AQP6, ITGB7, KRT77, ARF3, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LALBA, LINC00938, FIGNL2, ASIC1, DBX2, ATF1, NELL2, SLC11A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PPHLN1, HDAC7, ATP5G2, PFDN5, PFKM, SLC38A2, PRR13, POU6F1, KANSL2, SLC38A4, KIF21A, SLC48A1, PRKAG1, LMBR1L, PRPH, SMAGP, TWF1, DIP2B, CALCOCO1, NCKAP5L, RARG, C12orf10, ATG101, RNY5, HIGD1C, SCN8A, SPATS2, SMARCD1, SP1, SNORA2A, SNORA2B, SNORA2C, TARBP2, TMBIM6, TFCP2, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, RPAP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DNAJC22, ADAMTS20, KMT2D, AAAS, SLC38A1, CSRNP2, PUS7L, RACGAP1P, FAM186B, TMEM117, SOAT2, TUBA1C, SPRYD3, MFSD5, COX14, ZCRB1, CCDC65, NPFF, ENDOU, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, PCED1B, SCAF11, ACVRL1, DDX23, SLC4A8, ESPL1, DAZAP2) 0.45068476008367 387 0.0667762951694022 1.0224769202997 17219 0.677197020665159 2 1 1 -6.85309158589369 LTS-035 NA NA NA NA LTS-035 chr12 54105311 54757932 652622 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, HOXC13-AS, COPZ1, CBX5, SMUG1, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, LOC400043, MIR196A2, FLJ12825, MIR148B, NFE2, GPR84, CALCOCO1, MIR615) 0.445225655554194 18 0.0306687978799087 1.11881768787196 1074 0.258176316082017 2 1 1 -7.08011307277756 LTS-035 chr12 54757933 58163265 3405333 * c(AGAP2-AS1, MIR1228, BLOC1S1-RDH5, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, PTGES3, OS9, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, R3HDM2, NEMP1, ESYT1, STAC3, OR6C74, OR6C3, B4GALNT1, ZNF385A, BLOC1S1, SNORD59A, GLS2, GLI1, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, APOF, OR6C2, NA NA NA NA NA NA NA NA NA LTS-035 OR6C4, INHBC, ITGA5, ITGA7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, OR6C65, OR6C68, LRP1, MARS, METTL1, MIP, MMP19, OR9K2, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, PDE1B, IL23A, GPR84, PPP1R1A, PRIM1, NDUFA4L2, NEUROD4, RAB5B, RBMS2, RDH5, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, STAT2, STAT6, SUOX, TAC3, SNORD59B, NABP2, PIP4K2C, INHBE, PYM1, SARNP, ZC3H10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DNAJC14, RDH16, HSD17B6, TIMELESS, LACRT, MARCH9, COQ10A, CD63, TESPA1, ZBTB39, PAN2) 0.455849644079523 96 0.0757125964339616 1.0158329131037 8753 0.227057967147914 2 1 1 -6.88073327147923 LTS-035 NA NA NA NA LTS-035 chr12 58163266 58216963 53698 * c(TSFM, CTDSP2, AVIL, METTL21B, METTL1) 0.363 1 NA 0.955234030182121 335 0.189337563211769 2 2 0 -5.76499475935825 LTS-035 chr12 58216964 58217763 800 * CTDSP2 0.301805809039544 14 0.125677613907023 1.23427184195114 38 0.406155727654659 2 2 0 -6.73498413205483 LTS-035 chr12 58217764 58217780 17 * CTDSP2 0.489 1 NA 0.906463318828798 2 0.191625937701554 2 2 0 -5.76441172163112 LTS-035 chr12 58217781 82793072 24575292 * c(LOC100130075, MIR1252, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, MIR4699, CTDSP2, TMEM5, CCT2, FRS2, GLIPR1, CPSF6, KRR1, WIF1, IRAK3, XPOT, OSBPL8, C12orf56, RAB3IP, LRIG3, TPH2, CPM, GLIPR1L2, BEST3, E2F7, C12orf66, CSRP2, ZFC3H1, RPSAP52, PHLDA1, RAB21, MON2, TBC1D30, ZDHHC17, GRIP1, LEMD3, MSRB3, GLIPR1L1, KCNMB4, GNS, OTOGL, RASSF3, TRHDE-AS1, LINC01465, NA NA NA NA NA NA NA NA NA LTS-035 DPY19L2, CCDC59, TBK1, TRHDE, FAM19A2, IFNG, PTPRQ, KCNC2, LRRC10, FLJ41278, MIRLET7I, LYZ, MIR26A2, MDM2, MYF5, MYF6, PPP1R12A, NAP1L1, CNOT2, IL22, PAWR, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TBC1D15, SYT1, MIR548C, MIR617, MIR618, TSPAN8, MRS2P2, ACSS3, BBS10, YEATS4, HMGA2, THAP2, METTL25, LLPH, DYRK2, CAPS2, PPFIA2, LGR5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LIN7A, NAV3, ATP23, SLC16A7, HELB, USP15) 0.44861516189214 218 0.063909815259743 1.01995332981817 11530 0.277605771769536 2 1 1 -7.10472400920766 LTS-035 NA NA NA NA LTS-035 chr12 82793073 88900985 6107913 * c(MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, MKRN9P, KITLG, NTS, SLC6A15, CEP290, ALX1, LRRIQ1, METTL25, C12orf29, RASSF9) 0.449675762061913 22 0.0323804494486026 1.10816592050422 1425 0.392886391215734 2 1 1 -7.39698044575719 LTS-035 chr12 88900986 88909242 8257 * KITLG NA 0 NA 0.928 1 NA NA NA NA NA LTS-035 chr12 88909243 110974744 22065502 * c(TMPO-AS1, USP30-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR4497, MIR5700, ARPC3, PLXNC1, CKAP4, METAP2, KERA, PRDM4, PWP1, FICD, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, KRT19P2, ALDH1L2, SLC5A8, PPTC7, DAO, DCN, EPYC, DUSP6, NA NA NA NA NA NA NA NA NA LTS-035 FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, C12orf42, C12orf75, ARL1, C12orf76, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MVK, MYBPC1, NFYB, ATP2A2, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CEP83, GPN3, GLTP, CDK17, ANAPC7, NT5DC3, VPS29, SLC25A3, PMCH, SSH1, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, TRPV4, RFX4, SELPLG, LOC643339, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, GNPTAB, MTERF2, GLT8D2, KCTD10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 USP44, SLC41A2, EEA1, TCHP, USP30, FAM222A, FAM222A-AS1, GALNT4, CRADD, SOCS2, ANKRD13A, UBE3B, TMEM263, WSCD2, SART3, GIT2, NUAK1, NR1H4) 0.449320927680845 287 0.0657887208830213 1.00998738615107 15999 0.687449303064612 2 1 1 -6.83813840645733 LTS-035 NA NA NA NA LTS-035 chr12 110974745 111086551 111807 * c(PPTC7, TCTN1, HVCN1) 0 1 NA 0.937972865584151 145 0.302509482926629 2 2 0 -5.76581238420226 LTS-035 chr12 111086552 113269641 2183090 * c(LINC01405, SH2B3, TRAFD1, ERP29, FAM109A, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, MYL2, MAPKAPK5-AS1, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, HVCN1, MAPKAPK5, ADAM1A, TMEM116) 0.370804657083168 6 0.18535740251381 0.994270845724177 2414 0.266614235600186 2 1 1 -6.78815166066691 LTS-035 chr12 113269642 120638512 7368871 * c(LINC00173, MIR1178, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19) 0.435626799144095 90 0.100833832604701 1.04408320762137 5216 0.273908780378081 2 1 1 -6.96765200804195 LTS-035 chr12 120638513 120638601 89 * RPLP0 NA 0 NA 0.913 1 NA NA NA NA NA LTS-035 chr12 120638602 124371864 3733263 * c(MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, NA NA NA NA NA NA NA NA NA LTS-035 DDX55, PXN, BCL7A, RPLP0, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.420030100980482 159 0.112211795206745 0.983914231581575 6842 0.272998679367534 2 1 1 -6.73480054685586 LTS-035 NA NA NA NA LTS-035 chr12 124371865 124377776 5912 * DNAH10 NA 0 NA 1.784 1 NA NA NA NA NA LTS-035 chr12 124377777 131498975 7121199 * c(LOC100128554, LOC100190940, MIR3612, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, DNAH10, STX2, RIMBP2, ADGRD1, LINC00944, LINC00939, FLJ37505, LOC440117, FZD10-AS1, DHX37, RAN, AACS, UBC, CCDC92, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.44447518119684 87 0.0865793414023136 1.05085163458608 2820 0.258080782664312 2 1 1 -7.0607007678633 LTS-035 chr12 131498976 131555336 56361 * ADGRD1 NA 0 NA 1.394 1 NA NA NA NA NA LTS-035 chr12 131555337 132199474 644138 * c(LINC01257, ADGRD1, SFSWAP) 0.429342287551791 7 0.0458506893545311 1.36635528080945 150 1.07554806017858 4 2 2 -6.73797324246465 LTS-035 chr12 132199475 132203907 4433 * SFSWAP NA 0 NA 0.497 1 NA NA NA NA NA LTS-035 chr12 132203908 133812039 1608132 * c(LOC100130238, ZNF605, LRCOL1, ZNF891, ZNF268, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, MMP17, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, SFSWAP, ANHX, SNORA49, ZNF10, ZNF140, NOC4L, PUS1, ULK1) 0.447290958494796 113 0.0910315141455744 1.02174888974112 3248 0.279584206066284 2 1 1 -6.7896684727043 LTS-035 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.838984301535466 11 0.168746555520402 1 NA NA -5.76448750734475 LTS-035 chr13 19271620 19271712 93 * character(0) 0.309 1 NA 0.742 1 NA NA NA NA NA LTS-035 chr13 19271713 24880817 5609105 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00417, LINC00424, SPATA13-AS1, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, ANKRD20A9P, LINC00442, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.335579984629292 64 0.0656118940049793 0.779463181327249 2689 0.200405145128789 1 1 0 -6.87885023505197 LTS-035 chr13 24880818 24896629 15812 * c(SPATA13, C1QTNF9) 0.259660945575264 6 0.0694821319956913 1.20302533175029 67 0.832772067342884 10 8 2 -6.74790849115023 LTS-035 chr13 24896630 24995031 98402 * c(SPATA13, C1QTNF9) NA 0 NA 0.522 1 NA NA NA NA NA LTS-035 chr13 24995032 25525562 530531 * c(PARP4, TPTE2P6, ATP12A, CENPJ, RNF17, TPTE2P1) 0.326130973401816 21 0.0962615732065006 0.773322818341893 600 0.192520903793144 1 1 0 -6.84658489906133 LTS-035 chr13 25525563 25599933 74371 * TPTE2P1 NA 0 NA 0.221 1 NA NA NA NA NA LTS-035 chr13 25599934 25670526 70593 * PABPC3 NA 0 NA 0.466736483804654 51 0.271097017580748 0 NA NA -5.79070337243958 LTS-035 chr13 25670527 25670546 20 * PABPC3 NA 0 NA 0.92 1 NA NA NA NA NA LTS-035 chr13 25670547 25671821 1275 * PABPC3 0.303520178204612 20 0.0447052039829581 1.26744529998523 40 0.542679484665602 15 11 4 -6.73593449674497 LTS-035 chr13 25671822 34404987 8733166 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, LINC00423, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, PABPC3, POLR1D, POMP, ATP8A2, UBL3, RFC3, RNF6, RPL21, NA NA NA NA NA NA NA NA NA LTS-035 SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, STARD13, N4BP2L1, MTMR6, KL, NUP58) 0.34129757497551 101 0.0972624682124214 0.793727949763665 5314 0.34426652387937 1 1 0 -6.79439503606337 LTS-035 NA NA NA NA LTS-035 chr13 34404988 34405295 308 * RFC3 NA 0 NA 0.935 1 NA NA NA NA NA LTS-035 chr13 34405296 39917355 5512060 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, LINC00366, LINC00457, LINC00571, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, SMAD9, UFM1, SOHLH2, SUPT20H, RFC3, RFXAP, TRPC4, CCDC169, PROSER1, CCNA1, DCLK1) 0.323134864328048 79 0.0664332557898966 0.842373613756148 2480 0.242316975065508 1 1 0 -7.32435162704643 LTS-035 chr13 39917356 40229744 312389 * LHFP 0.378 1 NA 0.923738341713476 43 0.260272289058646 2 2 0 -5.77403718132955 LTS-035 chr13 40229745 41240356 1010612 * c(MIR4305, LINC00332, FOXO1, LINC00548, COG6, LINC00598) 0.308249580649594 7 0.115045953551489 0.833531405920129 245 0.187781945662413 1 1 0 -6.96992418158742 LTS-035 chr13 41240357 52483462 11243106 * c(LINC00462, TPT1-AS1, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, RCBTB2, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, NA NA NA NA NA NA NA NA NA LTS-035 SLC25A30, INTS6, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, PHF11, ENOX1, RCBTB1, NUDT15, GPALPP1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MTRF1) 0.355929298795406 113 0.0620654946980305 0.769725828188261 6102 0.628530740474213 1 1 0 -6.75931150311979 LTS-035 NA NA NA NA LTS-035 chr13 52483463 52492461 8999 * character(0) NA 0 NA 1.155 1 NA NA NA NA NA LTS-035 chr13 52492462 114783707 62291246 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR1297, MIR759, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR5007, MIR548AS, LINC00558, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, COL4A2-AS1, NDFIP2-AS1, NA NA NA NA NA NA NA NA NA LTS-035 MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, MRPS31P5, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, OLFM4, TNFSF13B, SUGT1, LECT1, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, HNRNPA1L2, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, TPTE2P3, FGF14, GPC5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, CKAP2, HS6ST3, DAOA, OXGR1, PCDH17, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, NEK5, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, ALG11, MZT1, NEK3, ATP4B, PCCA, PCDH8, PCDH9, VPS36, ATP7B, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, THSD1, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, DIAPH3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, UTP14C, TBC1D4) 0.352636157467253 241 0.06597191290117 0.808438505713715 14242 0.223637854299876 1 1 0 -7.64930047743805 LTS-035 NA NA NA NA LTS-035 chr13 114783708 114784209 502 * RASA3 NA 0 NA 0.64 1 NA NA NA NA NA LTS-035 chr13 114784210 115091399 307190 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.340395237328456 7 0.0273217164628467 0.714042096888586 249 0.164600169497721 1 1 0 -7.35339773274271 LTS-035 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 0.603022118996665 29 0.0775726736965634 0 NA NA -5.76466082958044 LTS-035 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.476 1 NA 1.00643898566621 5 0.768502439813954 2 2 0 -5.76496635846591 LTS-035 chr14 20201562 22471922 2270361 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, OR4Q3, OR4M1, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, NA NA NA NA NA NA NA NA NA LTS-035 ECRP, TMEM253, METTL17, SNORD9, TEP1, OR4K5, OR4K1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.447936255810003 97 0.0603857463240004 0.81936382103972 3735 0.214323681174243 2 1 1 -7.641859619454 LTS-035 NA NA NA NA LTS-035 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.236 1 NA NA NA NA NA LTS-035 chr14 22475772 22991095 515324 * character(0) 0.457433795819211 22 0.0506462350579105 0.918611630184819 621 0.219693954727256 2 1 1 -6.99339438246539 LTS-035 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.756 1 NA NA NA NA NA LTS-035 chr14 22992444 23018665 26222 * character(0) 0.478 1 NA 0.822608838376966 121 0.135778498117206 1 1 0 -5.76693742062219 LTS-035 chr14 23018666 23020921 2256 * character(0) 0.078 1 NA 0.769786665647449 14 0.11457000355366 1 1 0 -5.76442481958405 LTS-035 chr14 23020922 23103355 82434 * c(DAD1, ABHD4) 0.353008423909824 16 0.167663539566597 0.7553954041086 170 0.393962828447557 1 1 0 -6.73833179659453 LTS-035 chr14 23103356 23236524 133169 * OXA1L 0.482 1 NA 0.733821311878486 26 0.0928174469673588 1 1 0 -5.79737652338299 LTS-035 chr14 23236525 73989983 50753459 * c(MED6, SNORD127, MIR208B, KTN1-AS1, SLC25A21-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR4307, MIR548Y, LINC00645, LOC100506071, LOC100506321, LINC00871, LINC00648, NA, NEDD8-MDP1, BCL2L2-PABPN1, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4503, MIR548AI, MIR4707, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, DHRS2, GPHN, EFS, CDKN3, IRF9, PRMT5, SEC23A, VTI1B, CEBPE, TM9SF1, EXOC5, CGRRF1, NA NA NA NA NA NA NA NA NA LTS-035 CFL2, DHRS4, FERMT2, RIPK3, AP4S1, WDHD1, BAZ1A, MAP4K5, EGLN3, DTD2, WDR89, L3HYPDH, TRIM9, DHRS1, CMTM5, NA, CMA1, C14orf28, TRAPPC6B, MRPL52, PSMB11, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, LTB4R, RPL10L, RDH12, ADAM21P1, MIPOL1, PPP1R36, SLC38A6, C14orf37, FRMD6-AS1, ABHD12B, LOC145474, MDP1, LRFN5, CTSG, FAM71D, TMEM229B, ACTN1-AS1, CLEC14A, FITM1, REM2, TMEM30B, MDGA2, NOP9, COCH, SPTSSA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 EIF2S1, ADCY4, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, FOXG1, ACIN1, PCNX1, DAAM1, SAMD4A, FAM179B, SYNE2, SCFD1, KHNYN, FNTB, SLC7A8, ZFYVE26, TTC9, KLHDC2, FUT8, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NGDN, LRP10, PLEKHG3, SIPA1L1, DCAF4, NKX2-8, TINF2, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, CIDEB, GMFB, IGBP1P1, LINC00639, LINC01588, LINC00640, GPR137C, TSSK4, FAM177A1, GPR33, GPX2, CHMP4A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 STXBP6, STRN3, GZMH, ERO1A, GZMB, HIF1A, FOXA1, DHRS4L2, ADAM20P1, C14orf39, SNORD56B, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, ARF6, ARG2, TBPL2, LINC01551, TOMM20L, KTN1, ARHGAP5, LGALS3, HEATR4, FLJ22447, PLEKHD1, MIR208A, MAX, MGAT2, MIA2, MAP3K9, MMP14, MNAT1, LINC00238, TEX21P, MTHFD1, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, SIX6, OTX2, OXA1L, PAX9, EMC9, PCK2, ATL1, RDH11, NIN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 COX16, GMPR2, SLC22A17, DACT1, ATP6V1D, JKAMP, MBIP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, PNN, POLE2, GNG2, KLHL28, TMEM260, HAUS4, PPM1A, PPP2R3C, PRPF39, C14orf119, FBXO34, RNF31, RBM23, DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, DHRS4-AS1, G2E3, AP5M1, PRKCH, EAPP, ACTR10, PRKD1, LTB4R2, PSEN1, PSMA3, PSMA6, PSMB5, CCDC177, SDR39U1, PSMC6, PELI2, PSME1, PSME2, PTGDR, PTGER2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RHOJ, GALNT16, PLEKHH1, NYNRIN, TXNDC16, TRMT5, HOMEZ, FANCM, PYGL, RBM25, SNX6, RABGGTA, RAD51B, ARID4A, BCL2L2, SAV1, C14orf93, RPL36AL, RPS29, RTN1, NPAS3, SMOC1, SRSF5, CBLN3, MPP5, CDH24, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, IL25, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, SRP54, SSTR1, ZFP36L1, STYX, MIR624, TGM1, NKX2-1, DHRS4L1, CCDC175, ZBTB25, THTPA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 VCPKMT, IPO4, L2HGDH, NUBPL, DCAF11, DDHD1, PABPN1, DPF3, SGPP1, TMX1, SYT16, FSCB, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, GEMIN2, AJUBA, ZFHX2, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, AP1G2, SLC25A21, PAPLN, SLC7A7, CARMIL3, PPP1R3E, NEMF, CHURC1, MAPK1IP1L, CPNE6, AKAP6, AKAP5, RGS6, KIAA0391, SUSD6, KIAA0586, DLGAP5, REC8) 0.443930877406473 515 0.0840207916113101 0.800618835789295 30962 0.21923832199244 1 1 0 -7.62294981096944 LTS-035 NA NA NA NA LTS-035 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.456 1 NA NA NA NA NA LTS-035 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.464129295672523 43 0.135552877146775 0 NA NA -5.79161931818122 LTS-035 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.677 1 NA NA NA NA NA LTS-035 chr14 74035793 76368544 2332752 * c(MIR4505, MIR4709, BATF, NPC2, ACOT2, TMED10, C14orf1, JDP2, ISCA2, ACOT4, PTGR2, FAM161B, DLST, TTLL5, FOS, MLH3, PROX2, VSX2, LTBP2, ALDH6A1, COQ6, FCF1, PGF, VRTN, FLVCR2, YLPM1, ZNF410, ABCD4, ACOT1, ACOT6, SYNDIG1L, LINC01220, ZC2HC1C, BBOF1, DNAL1, RPS6KL1, EIF2B2, ELMSAN1, LIN52, NEK9, PNMA1, ENTPD5, ACYP1, AREL1) 0.449644973194096 83 0.0790453453258968 0.778468703262856 3963 0.361790288496478 2 1 1 -7.3086584386265 LTS-035 chr14 76368545 76368554 10 * TTLL5 NA 0 NA 0.81 1 NA NA NA NA NA LTS-035 chr14 76368555 88946615 12578061 * c(MIR1260A, DIO2-AS1, LINC00911, AHSA1, PTPN21, IFT43, NOXRED1, LRRC74A, ISM2, CEP128, SAMD15, DIO2, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FLRT2, GALC, ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, GSTZ1, GTF2A1, POMT2, KCNK10, GPATCH2L, SPATA7, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, TSHR, SLIRP, GPR65, STON2, CIPC, ALKBH1, NRXN3, SPTLC2) 0.443386811921206 122 0.0890985523197252 0.829589557165589 4467 0.226303357119082 1 1 0 -7.66378387971351 LTS-035 chr14 88946616 93278061 4331446 * c(SNORA11B, FBLN5, PTPN21, FOXN3, TTC8, TC2N, SLC24A4, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, ATXN3, CCDC88C, NDUFB1, CPSF2, NRDE2, PPP4R3A, TDP1, LGMN, KCNK13, PSMC1, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5, TRIP11, GOLGA5) 0.425262873338278 60 0.121516978191118 0.781268589819107 3627 0.200266652943203 1 1 0 -6.86250496557913 LTS-035 chr14 93278062 93282592 4531 * GOLGA5 NA 0 NA 1.013 1 NA NA NA NA NA LTS-035 chr14 93282593 94933473 1650881 * c(CHGA, IFI27L1, PRIMA1, LINC00521, SERPINA11, TMEM251, FAM181A-AS1, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA10, ASB2, SERPINA1, UBR7, BTBD7, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, IFI27L2, GON7, SERPINA6, FAM181A, GOLGA5) 0.423616437415977 42 0.102495675668675 0.907171762083638 1998 0.238409441617332 2 1 1 -6.83509634169219 LTS-035 chr14 94933474 94933640 167 * SERPINA9 0.375 1 NA 1.28720541849602 3 0.986181693874579 4 4 0 -5.76441064834002 LTS-035 chr14 94933641 95057299 123659 * c(SERPINA12, SERPINA9, SERPINA5, SERPINA4) 0.286482469617788 11 0.166235047174448 0.981358629531097 139 0.474433828380999 2 2 0 -6.73457644859883 LTS-035 chr14 95057300 95080659 23360 * c(SERPINA3, SERPINA5) 0.355 1 NA 0.878541259074844 49 0.159540016944974 2 2 0 -5.77096908451473 LTS-035 chr14 95080660 106518848 11438189 * c(MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR203B, MIR4710, MIR2392, MIR5698, SIVA1, CYP46A1, PAPOLA, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, C14orf79, PLD4, ADSSL1, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, GSC, SYNE3, DIO3, DYNC1H1, LINC00638, EIF5, ELK2AP, EML1, AKT1, NA NA NA NA NA NA NA NA NA LTS-035 RCOR1, PACS2, PPP1R13B, DICER1, NUDT14, KIF26A, TCL6, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, BRF1, GPR132, CCDC85C, HSP90AA1, JAG2, ASPG, KLC1, SERPINA13P, LINC01550, RTL1, TMEM179, DICER1-AS1, C14orf180, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, GLRX5, EVL, GSKIP, CINP, CDCA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ATG2B, PPP2R5C, MEG3, ZNF839, C14orf132, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, BDKRB1, BDKRB2, INF2, RD3L, TEX22, BCL11B, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, ZFYVE21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MEG8, WDR25, LINC00341, CLMN, TMEM121, TCL1A, AMN, SETD3, APOPT1, HHIPL1, ADAM6, DLK1, CCNK, BTBD6, MTA1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TCL1B, FAM30A, TECPR2) 0.419898299000694 231 0.0728168252760998 0.913843027150888 11305 0.299775907182689 2 1 1 -7.08698435026747 LTS-035 NA NA NA NA LTS-035 chr14 106518849 106691792 172944 * character(0) 0.088 1 NA 0.684847907553683 49 0.403880785350715 1 1 0 -5.77495330125995 LTS-035 chr14 106691793 107283157 591365 * c(LINC00226, LINC00221) 0.340766211286233 30 0.100266111440747 1.01626103555436 269 0.483044429048716 2 2 0 -6.85792904198818 LTS-035 chr15 20169987 20445987 276001 * character(0) 0.354 1 NA 1.10760507615348 23 0.443190315921368 3 3 0 -5.76786006576438 LTS-035 chr15 20445988 22383551 1937564 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.317007848810242 28 0.0919498583741511 1.14840558999299 216 0.740973235744435 2 2 0 -6.82028615232067 LTS-035 chr15 22383552 22413780 30229 * c(OR4N4, OR4N3P, LOC727924) NA 0 NA 0.854 1 NA NA NA NA NA LTS-035 chr15 22413781 29993902 7580122 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-035 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, LOC100289656, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA6L1, GOLGA8IP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, OR4N3P, HERC2P2, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, MAGEL2, NSMCE3, ATP10A, PDCD6IPP2, REREP3, GOLGA8S, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.319821026065086 66 0.0875909916497229 0.83395807335309 3024 0.230608561173858 1 1 0 -7.28440725564034 LTS-035 NA NA NA NA LTS-035 chr15 29993903 41864803 11870901 * c(SRP14-AS1, ANKRD63, WHAMMP1, LOC100288637, MIR1233-2, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, EXD1, FSIP1, RHOV, BAHD1, FAN1, GOLGA8A, RTF1, LPCAT4, NUTM1, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, LOC283710, FAM98B, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, NA NA NA NA NA NA NA NA NA LTS-035 LTK, MIR211, MEIS2, TRPM1, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, KLF13, PLCB2, DLL4, INO80, PPP1R14D, MTMR10, ZNF770, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, VPS18, RAD51, RYR3, C15orf62, SCG5, C15orf56, PHGR1, GOLGA8T, SPINT1, SRP14, ACTC1, BUB1B, THBS1, TJP1, ANP32AP1, GOLGA8O, OIP5-AS1, TYRO3, CHAC1, KATNBL1, C15orf41, ZFYVE19, DISP2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 BMF, AQR, ARHGAP11A, SLC12A6) 0.354253658435583 184 0.0519113825376324 0.774445900000346 9028 0.196611380409813 1 1 0 -6.78317266712789 LTS-035 NA NA NA NA LTS-035 chr15 41864804 41865132 329 * TYRO3 NA 0 NA 0.926 1 NA NA NA NA NA LTS-035 chr15 41865133 41871537 6405 * TYRO3 NA 0 NA 1.15690504487836 47 0.387263689993548 3 NA NA -5.76442083716558 LTS-035 chr15 41871538 41961082 89545 * MGA NA 0 NA 0.761 1 NA NA NA NA NA LTS-035 chr15 41961083 43658935 1697853 * c(JMJD7, PLA2G4B, MIR4310, TGM7, PLA2G4E, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, MAPKBP1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, GANC, TMEM87A, PLA2G4D, EHD4, SPTBN5, HAUS2, STARD9, ZNF106, MIR626, MIR627, TMEM62, CAPN3, JMJD7-PLA2G4B, SNAP23, TGM5, LCMT2) 0.334938642562138 80 0.0689599395264647 0.797856966171583 4021 0.188076509684874 1 1 0 -6.88680432843734 LTS-035 chr15 43658936 43661368 2433 * ZSCAN29 NA 0 NA 0.787221223861674 9 0.0535033747637578 1 NA NA -5.76446590496648 LTS-035 chr15 43661369 43661730 362 * ZSCAN29 NA 0 NA 1.022 1 NA NA NA NA NA LTS-035 chr15 43661731 43661802 72 * ZSCAN29 0.26 1 NA 1.244 1 NA NA NA NA NA LTS-035 chr15 43661803 43873639 211837 * c(ZSCAN29, TUBGCP4, MAP1A, TP53BP1, PPIP5K1) 0.261090697127897 12 0.0317159504847563 1.00933617007108 641 0.245171176421403 3 3 0 -6.93688652943461 LTS-035 chr15 43873640 43888477 14838 * c(CKMT1B, PPIP5K1) NA 0 NA 0.896 1 NA NA NA NA NA LTS-035 chr15 43888478 45059909 1171432 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, CATSPER2, TRIM69, STRC, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.272384152213579 25 0.12866010777756 0.868511594946642 1855 0.30719241330661 2 2 0 -6.85794444513908 LTS-035 chr15 45059910 45059989 80 * TRIM69 NA 0 NA 0.721 1 NA NA NA NA NA LTS-035 chr15 45059990 45123849 63860 * TRIM69 0.309 1 NA 1.88741206658843 39 2.33309653492854 7 7 0 -5.7644277815547 LTS-035 chr15 45123850 45127366 3517 * character(0) NA 0 NA 0.543 1 NA NA NA NA NA LTS-035 chr15 45127367 53081610 7954244 * c(MIR147B, GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, TERB2, NA, CYP19A1, DUT, FAM227B, FBN1, FGF7, CEP152, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, GALK2, BLOC1S6, GATM, HMGN2P46, SLC24A5, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, USP50, TNFAIP8L3, SHC4, CTXN2, DUOXA2, MYO5A, DUOX2, MYEF2, DUOX1, TRPM7, FLJ10038, MYO5C, MAPK6, NA NA NA NA NA NA NA NA NA LTS-035 FAM214A, DTWD1, SQRDL, SLC12A1, SORD, SLC30A4, SPATA5L1, ATP8B4, SEMA6D, C15orf48, SPPL2A, SHF, DUOXA1, USP8, SLC28A2, COPS2, SECISBP2L) 0.292957484081425 111 0.090868598598758 0.887219642705426 6947 0.226613236204848 2 2 0 -7.53397032570443 LTS-035 NA NA NA NA LTS-035 chr15 53081611 53081689 79 * ONECUT1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-035 chr15 53081690 71305260 18223571 * c(USP3-AS1, MIR1272, MIR548H4, MIR2116, MIR4311, MIR4312, IQCH-AS1, DYX1C1-CCPG1, MIR4511, PDCD7, MYZAP, FEM1B, ADAM10, DENND4A, SNAPC5, CORO2B, CLPX, LACTB, DIS3L, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DRAIC, C15orf61, DYX1C1, MGC15885, LCTL, ITGA11, ZNF609, DAPK2, SPESP1, WDR72, GLCE, PYGO1, FOXB1, PRTG, LINC00926, EWSAT1, FBXL22, GTF2A2, ANXA2, ONECUT1, RBPMS2, ANKDD1A, AQP9, NA NA NA NA NA NA NA NA NA LTS-035 TEX9, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, LINC00593, UNC13C, MYO1E, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, VPS13C, LRRC49, PAQR5, DPP8, PARP16, TIPIN, CLN6, ZWILCH, UACA, LARP6, MNS1, MAP2K1, MAP2K5, THAP10, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, RPL4, RPLP1, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SCARNA14, MIR628, MIR629, TCF12, TLE3, TPM1, CA12, NOX5, ICE2, AAGAB, SLTM, SNX22, ANP32A-IT1, PIF1, PLEKHO2, ANP32A, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, CGNL1, PIAS1, RAB11A, ALDH1A2, HERC1, CCNB2, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, KIF23, IGDCC3, KIAA0101, USP3) 0.278552796288981 215 0.068552444478592 0.983248149370741 14006 0.260764033848024 2 2 0 -6.76890308911373 LTS-035 NA NA NA NA LTS-035 chr15 71305261 71329512 24252 * LRRC49 NA 0 NA 1.341 1 NA NA NA NA NA LTS-035 chr15 71329513 72144579 815067 * c(NR2E3, CT62, MYO9A, LRRC49, THSD4) 0.231736681261203 4 0.049335585534176 1.16692696800511 467 0.245279101843849 3 3 0 -6.77663482005314 LTS-035 chr15 72144580 72146703 2124 * MYO9A NA 0 NA 0.903 1 NA NA NA NA NA LTS-035 chr15 72146704 74726177 2579474 * c(HCN4, ADPGK-AS1, LOXL1-AS1, SENP8, HIGD2B, CYP11A1, TBC1D21, GRAMD2, ARIH1, NPTN, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, LOXL1, MYO9A, NEO1, PKM, PML, GOLGA6B, PARP6, ISLR2, BBS4, CELF6, STRA6, MIR630, LOC729739, HEXA-AS1, CCDC33, CD276, ADPGK, SEMA7A, STOML1) 0.286955647405637 35 0.0798584672399613 0.947989873651525 2605 0.325357870828267 2 2 0 -6.75498797224671 LTS-035 chr15 74726178 78793109 4066932 * c(DNM1P35, MIR4313, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, ARID3B, CLK3, TMEM266, CRABP1, CSK, NRG4, CSPG4, CYP1A1, CYP1A2, ODF3L1, SCAMP5, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, IDH3A, IREB2, MAN2C1, MPI, UBL7-AS1, SCAPER, RPP25, COMMD4, IMP3, DNAJA4, C15orf39, FAM219B, PTPN9, CPLX3, RCN2, PPCDC, LOC645752, SH2D7, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, NA NA NA NA NA NA NA NA NA LTS-035 TYRO3P, NEIL1, LMAN1L, PEAK1, EDC3, WDR61, LINC00597, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A) 0.291020390726245 86 0.0796213001425404 0.884951915868013 4562 0.360855436512124 2 2 0 -6.92310565967231 LTS-035 NA NA NA NA LTS-035 chr15 78793110 78810792 17683 * c(HYKK, IREB2) 0 1 NA 0.976054186213817 33 0.465395447279499 2 2 0 -5.76441089675875 LTS-035 chr15 78810793 78916622 105830 * c(CHRNA3, CHRNA5, HYKK, PSMA4) 0.170322431375552 10 0.135280613705159 0.928102486544194 235 0.566964817491795 5 5 0 -6.79384888254775 LTS-035 chr15 78916623 78917399 777 * CHRNB4 0.261 1 NA 0.939350792989502 17 0.52412687900366 2 2 0 -5.7644131635034 LTS-035 chr15 78917400 102516492 23599093 * c(FAM138E, NA, UBE2Q2P2, LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, NA, UBE2Q2L, LINC00933, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, ST20-MTHFS, MIR4514, MIR3529, MIR4515, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, MTHFS, MORF4L1, ABHD2, CHD2, ADAMTS7, AKAP13, CHRNB4, C15orf40, TARSL2, LRRC28, AGBL1, WHAMM, FSD2, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, LINC00052, NA NA NA NA NA NA NA NA NA LTS-035 CTSH, CFAP161, ADAMTS17, ACAN, DNM1P46, CERS3, FAH, ALDH1A3, FES, CHSY1, MESDC2, KIAA1024, SYNM, TMED3, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, OR4F4, SLCO3A1, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, NTRK3-AS1, LINC00928, FAM169B, ANPEP, LOC338963, IDH2, TMC3, ZNF774, IGF1R, ARPIN, IL16, ISG20, GOLGA6L5P, KIF7, ZNF710, HDDC3, WASH3P, GOLGA2P7, UBE2Q2P1, SPATA41, ANKRD34C, GDPGP1, OR4F6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 OR4F15, OR4F13P, ADAMTS7P1, ST20, FAM174B, LINC01197, MIR184, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, GOLGA6L9, DNM1P41, LOC440300, TTLL13P, LOC440311, PRKXP1, NMB, NTRK3, FURIN, PCSK6, HDGFRP3, NGRN, RHCG, PDE8A, BTBD1, TM6SF1, PLIN1, POLG, ZFAND6, SCAND2P, ZSCAN2, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, ADAMTSL3, CEMIP, ALPK3, ABHD17C, RASGRF1, MESDC1, BCL2A1, RLBP1, BLM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LOC642423, GOLGA6L4, KLHL25, NR2F2-AS1, CPEB1, SH3GL3, BNC1, LOC646938, GOLGA6L10, AEN, CRTC3, EFTUD1P1, TTC23, MRPS11, SNRPA1, SCARNA15, MIR549A, NR2F2, HSP90B2P, AGBL1-AS1, ASB9P1, ANKRD34C-AS1, EFL1, LRRK1, TM2D3, STARD5, AP3B2, ST8SIA2, FAM103A1, MEX3B, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ARRDC4, LINC00923, HOMER2, ZNF592, SV2B, ARNT2) 0.304132765927555 414 0.0671866509745565 0.90881554656509 14605 0.306538223222197 2 2 0 -7.49646468502946 LTS-035 NA NA NA NA LTS-035 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.249 1 NA NA NA NA NA LTS-035 chr16 81704 81779 76 * character(0) 0.37 1 NA 1.378 1 NA NA NA NA NA LTS-035 chr16 81780 2653223 2571444 * c(MIR940, LOC100134368, MIR1225, MIR3178, MIR3177, MIR3176, MIR3677, MIR3180-5, MIR4717, MIR4516, MIR5587, NUBP2, MSLN, STUB1, MRPL28, TBL3, RNPS1, RPUSD1, TSR3, WFIKKN1, CLCN7, NOXO1, CCDC78, RNF151, PRR35, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, WDR90, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, DECR2, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, NA NA NA NA NA NA NA NA NA LTS-035 HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NDUFB10, NME3, NME4, NTHL1, NTN3, AMDHD2, PDPK1, POLR3K, MSRB1, GNG13, ATP6V0C, PKD1, LUC7L, SNORA10, TBC1D24, CASKIN1, CRAMP1, RAB40C, TMEM8A, RPL3L, RPS2, CHTF18, MLST8, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, HS3ST6, PDIA2, UNKL, LINC00254, LMF1, ABCA17P, FAM173A, MRPS34, CAPN15, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CEMP1, METRN, SNRNP25, TMEM204, C16orf59, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, TRAF7, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, CCNF, RHOT2, RHBDL1, ZNF598, HN1L, SPSB3, PIGQ, SYNGR3, SLC9A3R2, RAB11FIP3, IFT140, TELO2) 0.302504335437101 254 0.0782848063705114 0.89461285673246 8225 0.222430101886111 2 2 0 -6.98675200288351 LTS-035 NA NA NA NA LTS-035 chr16 2653224 2672646 19423 * LOC652276 NA 0 NA 0.006 1 NA NA NA NA NA LTS-035 chr16 2672647 2747930 75284 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.318609733332213 2 0.021920310216783 0.59371171566619 80 0.79040794136055 8 6 2 -6.8629811905425 LTS-035 chr16 2747931 14968958 12221028 * c(MIR365A, LOC100128770, SRRM2-AS1, MIR548X, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, MIR4718, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, RMI2, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, TEKT5, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, EMP2, ERCC4, CLUAP1, CLEC16A, MGRN1, NOMO1, SRRM2, CARHSP1, TMEM186, PRSS33, ZNF500, RSL1D1, OR1F2P, LINC00514, LINC00921, TMEM114, NA NA NA NA NA NA NA NA NA LTS-035 DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, BCAR4, MEFV, CIITA, SMIM22, NUBP1, OR1F1, OR2C1, PARN, PAM16, TXNDC11, NAGPA, BFAR, TNFRSF12A, PMM2, KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, CPPED1, ALG1, PRM1, PRM2, NMRAL1, MIR193B, MKL2, PRM3, TNFRSF17, SRL, PRSS22, NPIPA3, MMP25, C16orf90, TCEB2, TFAP4, TNP2, SHISA9, ABCC6P2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TVP23A, USP7, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ATF7IP2, ZNF205-AS1, SNN, PRSS27, PLA2G10, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, SOCS1, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, SNX29, IL32, LITAF, SEC14L5) 0.312624936347982 187 0.0652716522833638 0.906665682257485 8439 0.24840689332712 2 2 0 -7.41993112559896 LTS-035 NA NA NA NA LTS-035 chr16 14968959 15068592 99634 * c(NOMO1, NPIPA1) NA 0 NA 1.298 1 NA NA NA NA NA LTS-035 chr16 15068593 15123936 55344 * PDXDC1 0.387783660033406 4 0.093894888039765 1.20252689604057 112 0.254576042450898 3 2 1 -6.75050440632962 LTS-035 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.8 1 NA NA NA NA NA LTS-035 chr16 15125636 28608421 13482786 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, MPV17L, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, NA NA NA NA NA NA NA NA NA LTS-035 GTF3C1, EEF2K, PKD1P1, ZKSCAN2, AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, SBK1, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.289361566412209 170 0.0691365019346246 0.92587794257407 9663 0.244058171132195 2 2 0 -7.14481339904453 LTS-035 NA NA NA NA LTS-035 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.456 1 NA NA NA NA NA LTS-035 chr16 28616944 28712734 95791 * SULT1A1 0.265404546723623 10 0.0624575411335128 0.632710511796169 83 0.608031219715962 3 3 0 -6.85686900715666 LTS-035 chr16 28712735 28734495 21761 * character(0) NA 0 NA 0.947 1 NA NA NA NA NA LTS-035 chr16 28734496 29367177 632682 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.294991601002372 24 0.0917748900014738 0.933420230764141 870 0.36428865443362 2 2 0 -6.73978086493281 LTS-035 chr16 29367178 29624350 257173 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.386259442613136 39 0.357453840814573 0 NA NA -5.9546887990507 LTS-035 chr16 29624351 29624403 53 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 1.001 1 NA NA NA NA NA LTS-035 chr16 29624404 33961938 4337535 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, NA NA NA NA NA NA NA NA NA LTS-035 MAZ, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, LINC00273, SLC5A2, ZG16, ZNF747, SPN, SNORA30, STX4, TBX6, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, HSD3B7, SLC7A5P1, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.307074039724153 97 0.0841029887386687 0.995992443162732 5991 0.252374515394709 2 2 0 -6.75633667794342 LTS-035 NA NA NA NA LTS-035 chr16 33961939 33961944 6 * LINC00273 0.479 1 NA 0.643 1 NA NA NA NA NA LTS-035 chr16 33961945 33965652 3708 * LINC00273 0.368886998558732 39 0.0899122904446853 0.733019648207406 64 0.345917297609868 1 1 0 -6.73312249101684 LTS-035 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.833224982741316 115 0.192257882845931 1 NA NA -5.81657704816535 LTS-035 chr16 46508169 46602819 94651 * ANKRD26P1 0.312 1 NA 0.97005801982735 97 0.265543447658762 2 2 0 -5.76449239921072 LTS-035 chr16 46602820 53242344 6639525 * c(LINC00919, LOC100507577, MIR548AE2, DNAJA2, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, ZNF423, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, SALL1, NOD2, PAPD5, CASC16, SIAH1, SHCBP1, CHD9, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.292488607590059 40 0.081825169314419 0.89062367838333 3112 0.221115600192275 2 2 0 -7.3979844457567 LTS-035 chr16 53242345 53243381 1037 * CHD9 NA 0 NA 0.542 1 NA NA NA NA NA LTS-035 chr16 53243382 53297015 53634 * CHD9 NA 0 NA 0.539494465434135 81 0.104939387267127 0 NA NA -5.77836976324459 LTS-035 chr16 53297016 53301230 4215 * CHD9 NA 0 NA 0.909 1 NA NA NA NA NA LTS-035 chr16 53301231 66514785 13213555 * c(CDH5, MIR3935, LINC00920, CDH8, CDH11, IRX5, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, BEAN1, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, RPGRIP1L, ARL2BP, DKFZP434H168, AMFR, GNAO1, GOT2, LOC283856, LINC00922, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, NA NA NA NA NA NA NA NA NA LTS-035 SLC38A7, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, RBL2, CCL17, CCL22, CX3CL1, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, SLC6A2, SLC12A3, SNORA46, SNORA50A, TK2, FTO, IRX6, IRX3, USB1, SETD6, FAM192A, CHD9, NLRC5, DRC7, CAPNS2, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.300310424927628 112 0.0849550523713771 0.911845640359931 6223 0.24971558373074 2 2 0 -7.33112684703091 LTS-035 NA NA NA NA LTS-035 chr16 66514786 66516724 1939 * c(BEAN1, TK2) NA 0 NA 0.598 1 NA NA NA NA NA LTS-035 chr16 66516725 69791466 3274742 * c(CDH3, MIR1538, CKLF-CMTM1, CDH16, NUTF2, CTCF, NFAT5, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, NQO1, DYNC1LI2, AGRP, E2F4, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, C16orf86, LCAT, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, LRRC36, FBXL8, SMPD3, DDX28, NA NA NA NA NA NA NA NA NA LTS-035 TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, CDH1) 0.28901796611906 50 0.0665441881729114 0.878765567722308 6597 0.189954460420808 2 2 0 -7.32305697145107 LTS-035 NA NA NA NA LTS-035 chr16 69791467 69820851 29385 * WWP2 NA 0 NA 0.558 1 NA NA NA NA NA LTS-035 chr16 69820852 70100152 279301 * c(MIR1972-1, WWP2, PDXDC2P, CLEC18C, CLEC18A, MIR140) 0.379046907454192 14 0.066134603002405 0.681587187793645 239 0.153496762879937 1 1 0 -6.87315853854999 LTS-035 chr16 70100153 70134329 34177 * CLEC18C NA 0 NA 1.053 1 NA NA NA NA NA LTS-035 chr16 70134330 70191100 56771 * c(CLEC18C, PDPR) 0.426413301762645 4 0.094940332139016 0.930592793462153 114 0.220752459786489 2 1 1 -6.73499173619684 LTS-035 chr16 70191101 70208038 16938 * c(CLEC18C, PDPR) NA 0 NA 0.396 1 NA NA NA NA NA LTS-035 chr16 70208039 70871572 663534 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.320040227877098 17 0.107767246470181 0.708593930239763 1251 0.225172186272691 1 1 0 -6.92079842061873 LTS-035 chr16 70871573 70871622 50 * HYDIN 0 1 NA 4.323 1 NA NA NA NA NA LTS-035 chr16 70871623 70884524 12902 * HYDIN 0.483 1 NA 0.860880810977674 19 0.141549714367168 1 1 0 -5.76826373332564 LTS-035 chr16 70884525 71209748 325224 * HYDIN 0.425428284355866 77 0.0444803327325684 0.884417220980807 552 0.22588633400295 2 1 1 -6.77298452083758 LTS-035 chr16 71209749 71212772 3024 * HYDIN NA 0 NA 0.732 1 NA NA NA NA NA LTS-035 chr16 71212773 71509796 297024 * c(HYDIN, CMTR2, ZNF19, ZNF23, CALB2) 0.401806922621242 9 0.0336443820636439 0.709337401480932 309 0.150178860986023 0 0 0 -7.32621514602071 LTS-035 chr16 71509797 71571614 61818 * c(CHST4, ZNF19, ZNF23) 0.357 1 NA 0.705467128666024 55 0.186584244068678 1 1 0 -5.77487372465751 LTS-035 chr16 71571615 74808590 3236976 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, MLKL, PHLPP2, GLG1, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, ZFHX3, CLEC18B, TXNL4B, RFWD3, ZNF821, PSMD7, TAT, SNORD71, FA2H, PMFBP1, MARVELD3, DHX38, IST1) 0.357810389749158 26 0.115991385621785 0.69995109184854 2281 0.16595777044091 1 1 0 -7.45337936614392 LTS-035 chr16 74808591 74908035 99445 * c(FA2H, WDR59) NA 0 NA 0.914 1 NA NA NA NA NA LTS-035 chr16 74908036 84256515 9348480 * c(LOC100129617, SYCE1L, MIR3182, MIR4720, MIR4719, CDH13, CLEC3A, MPHOSPH6, CFDP1, GABARAPL2, PKD1L2, C16orf46, DNAAF1, CDYL2, TMEM170A, SLC38A8, CTRB1, ADAD2, ZFP1, ADAMTS18, LDHD, MON1B, ATMIN, MLYCD, ADAT1, CHST5, GCSH, NUDT7, OSGIN1, HSBP1, HSD17B2, KARS, MAF, CHST6, CTRB2, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, CENPN, CMC2, VAT1L, TMEM231, WDR59, CMIP, GAN, DYNLRB2, HSDL1, ZNRF1, CNTNAP4, MBTPS1, NA NA NA NA NA NA NA NA NA LTS-035 TAF1C, KCNG4, SDR42E1, BCAR1) 0.297953012383488 165 0.0671335950631645 0.916718032565479 4101 0.259651325868272 2 2 0 -7.08290719700031 LTS-035 NA NA NA NA LTS-035 chr16 84256516 90141355 5884840 * c(VPS9D1-AS1, URAHP, LOC100287036, MIR1910, C16orf95, MIR4722, MIR5093, MIR5189, CDH15, EMC8, TUBB3, PRDM7, RNF166, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, GALNS, GAS8, CPNE7, IL17C, LINC00304, ANKRD11, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, NA NA NA NA NA NA NA NA NA LTS-035 FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, SLC7A5, CDT1, MAP1LC3B, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, USP10, CENPBD1, ZNF276, KCNG4, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.305300947665654 211 0.0735811114307002 0.876530039800374 6292 0.457641753506266 2 2 0 -6.94751370461795 LTS-035 NA NA NA NA LTS-035 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.877993494269133 17 0.213116389769148 2 NA NA -5.7675769697237 LTS-035 chr17 6004 181479 175476 * c(LOC100506388, DOC2B, RPH3AL) 0.29 1 NA 0.854483558686512 99 0.198709636103837 1 1 0 -5.78711285833536 LTS-035 chr17 181480 21199083 21017604 * c(MIR744, LOC100128288, FAM106CP, C17orf107, LOC100130950, DBIL5P, LOC100287072, LINC00675, MIR1288, MIR1253, MIR1180, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, EPN2-AS1, COX10-AS1, EPN2-IT1, TMEM220-AS1, LOC101559451, PEMT, CLEC10A, MYBBP1A, FBXW10, PRPF8, TRIM16, NA NA NA NA NA NA NA NA NA LTS-035 RAI1, KIF1C, GRAP, CHD3, AKAP10, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, CLDN7, CRK, SMCR5, SMCR8, NA, TOM1L2, DNAH2, RTN4RL1, SLC47A2, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, TRIM16L, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, USP32P1, DLG4, DNAH9, DPH1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DRG2, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, CENPV, FLCN, PLD6, SLC16A13, C17orf74, SPNS3, ENO3, ALDH3A1, USP32P2, ALDH3A2, FGF11, NLRP1, ARHGEF15, EPN2, FOXO3B, RAP1GAP2, CAMTA2, KDM6B, FLII, ZZEF1, MPRIP, CLUH, SMG6, WSCD1, USP22, CTDNEP1, TNFRSF13B, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TBC1D28, TMEM256, BCL6B, CDRT15L2, NATD1, DHRS7B, RNF167, SENP3, OR1A2, SNORA67, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNORD49A, PELP1, B9D1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, CCDC144B, SLC13A5, TMEM102, LGALS9B, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, CCDC144NL, KRT17P5, SMTNL2, CCDC144CP, TBC1D26, RFLNB, ITGAE, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, LRRC75A, OR3A4P, SLC25A35, LLGL1, C17orf97, MED11, KRT16P2, GRAPL, MIR132, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, MEIS3P1, MFAP4, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, TVP23B, GLOD4, YBX2, MYO15A, TRPV2, ANKFY1, RASD1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, ALKBH5, TTC19, SLC52A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MED9, WRAP53, MRM3, SLC47A1, VPS53, NCBP3, TSR1, MAPK7, MAP2K3, PRPSAP2, DHX33, PSMB6, NT5M, ADPRM, PLSCR3, ZNF286A, ZNF287, MIR497, ZNF624, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, CDRT15P2, FAM83G, KRT16P3, EVPLL, TEKT3, SHBG, SHMT1, SLC2A4, SNORA48, SNORD10, OR1D4, LGALS9C, SOX15, SREBF1, SCARNA21, SNORA59A, VAMP2, SNORD49B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNORD65, SNORD91A, SNORD91B, MIR33B, C1QBP, TOP3A, TP53, BHLHA9, TLCD2, LOC728392, KRT16P1, ZNF286B, UBB, UBE2G1, TRPV1, YWHAE, ZNF18, RNF112, ZNF232, MIS12, GID4, METTL16, PHF23, FAM57A, FAM106A, CTC1, NDEL1, PITPNM3, DRC3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 GAS7, COPS3, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TMEM11, TM4SF5, USP6, RABEP1, ATPAF2, KCNAB3, AURKB, TMEM88, SPECC1, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, RPH3AL, FXR2, MPDU1, SPAG7, NCOR1, CD68, ULK2, CCDC144A, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.346711775287487 575 0.0755762944873665 0.792702713541065 26202 0.203427983444147 1 1 0 -6.87253719162167 LTS-035 NA NA NA NA LTS-035 chr17 21199084 21201719 2636 * MAP2K3 0.458 1 NA 0.881652890083225 12 0.329698346977961 2 2 0 -5.76457251814102 LTS-035 chr17 21201720 21202223 504 * MAP2K3 0.385 1 NA 0.80939179945425 7 0.11468756730892 1 1 0 -5.76444367569272 LTS-035 chr17 21202224 21202237 14 * MAP2K3 0.438 1 NA 1.139 1 NA NA NA NA NA LTS-035 chr17 21202238 21320405 118168 * c(KCNJ12, MAP2K3) 0.350825641568453 95 0.0854012530362217 1.10034355746064 211 0.384174564260663 4 3 1 -6.75824348234206 LTS-035 chr17 21320406 21320422 17 * KCNJ12 NA 0 NA 0.708 1 NA NA NA NA NA LTS-035 chr17 21320423 22066835 746413 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.400856255788003 12 0.0614363430098524 0.867352118946511 208 0.304206278441118 2 1 1 -6.89695707353313 LTS-035 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.778 1 NA NA NA NA NA LTS-035 chr17 25620838 25753033 132196 * c(MIR4522, WSB1, TBC1D3P5) 0.321 1 NA 0.786654520142216 75 0.151622159591793 1 1 0 -5.76473741016167 LTS-035 chr17 25753034 27093619 1340586 * c(SPAG5-AS1, MIR4723, NARR, SPAG5, SLC46A1, TLCD1, SGK494, TMEM199, PROCA1, LYRM9, ALDOC, SARM1, PPY2P, PYY2, POLDIP2, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, LGALS9, TBC1D3P5, NOS2, NLK, FAM222B, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, PIGS, TRAF4, KIAA0100) 0.338243684554374 28 0.050346248211706 0.809548839145047 2532 0.180810628443185 1 1 0 -6.97596798247138 LTS-035 chr17 27093620 27717755 624136 * c(MIR4523, MIR451B, MIR4732, SEZ6, CRYBA1, DHRS13, FLOT2, ERAL1, MYO18A, MIR144, PIPOX, FAM222B, MIR451A, NUFIP2, PHF12, TIAF1) 0.287922612436709 15 0.0872096543366834 0.903066302489134 962 0.196505333212044 2 2 0 -6.80088458485088 LTS-035 chr17 27717756 27778474 60719 * TAOK1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-035 chr17 27778475 34433730 6655256 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4724, MIR4733, MIR4725, CCT6B, LRRC37B, ABHD15, RFFL, TMEM132E, SPACA3, ANKRD13B, CPD, C17orf50, SLFN13, SLC35G3, UNC45B, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, ASIC2, C17orf102, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, CRLF3, PEX12, NA NA NA NA NA NA NA NA NA LTS-035 NLE1, FNDC8, SLFN12, RHOT1, COPRS, ADAP2, UTP6, LYZL6, PSMD11, TAOK1, RAD51D, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, ZNF830, SLFN11, RASL10B, GOSR1) 0.33106814298562 81 0.102812222456378 0.774430311672399 6608 0.209458937879327 1 1 0 -6.81397170210573 LTS-035 NA NA NA NA LTS-035 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.077 1 NA NA NA NA NA LTS-035 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.309310334628033 39 0.294868819617684 0 NA NA -6.02905613803474 LTS-035 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.688 1 NA NA NA NA NA LTS-035 chr17 34842415 41369443 6527029 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, RAMP2-AS1, MIR2909, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, STARD3, DDX52, DUSP14, SYNRG, TMEM106A, NT5C3B, CCR7, ZPBP2, CNTD1, GJD3, KRT222, KRT40, CNP, CSF3, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, FAM134C, NA NA NA NA NA NA NA NA NA LTS-035 KRT28, KRT24, ZNF385C, ERBB2, EZH1, CASC3, IKZF3, KCNH4, GAST, G6PC, KRT23, KAT2A, AATF, TUBG2, CCR10, PIGW, C17orf78, YWHAEP7, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, PSMC3IP, HCRT, SOCS7, ACACA, AOC2, KLHL10, HSD17B1, MSL1, KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, JUP, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, LHX1, NBR1, MLLT6, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, FBXO47, RAPGEFL1, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, KLHL11, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, TADA2A, HNF1B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 KRTAP2-3, PCGF2, CACNB1, DHX58, DHRS11, GGNBP2, MRM1, PLEKHH3, MYO19, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 KRT37, KRT36, HAP1, AOC4P, PGAP3, ZNHIT3, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.335692557334714 157 0.0817151960454083 0.79479362306426 12551 0.200413225077369 1 1 0 -6.86606777003058 LTS-035 NA NA NA NA LTS-035 chr17 41369444 41369652 209 * TMEM106A NA 0 NA 1.114 1 NA NA NA NA NA LTS-035 chr17 41369653 41573725 204073 * c(LINC00910, MIR2117, LINC00854, TMEM106A, DHX8, ARL4D) 0.375136021321689 6 0.0940526448325617 1.02752044493678 131 0.294402078645423 3 2 1 -6.81525224541935 LTS-035 chr17 41573726 41576187 2462 * DHX8 NA 0 NA 0.819 1 NA NA NA NA NA LTS-035 chr17 41576188 48154817 6578630 * c(MAP3K14-AS1, HDAC5, MIR1203, MIR3185, GJC1, MIR5089, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, HEXIM1, IGF2BP1, C1QL1, RUNDC3A, CBX1, KAT7, NXPH3, SNF8, PLCD3, OSBPL7, SPATA32, HEXIM2, LSM12, CCDC43, FLJ40194, B4GALNT2, EFCAB13, MRPL10, CD300LG, KIF18B, NAGS, PHOSPHO1, DHX8, DLX3, DLX4, DUSP3, ETV4, ZNF652, GPATCH8, FAM215A, FZD2, TAC4, GFAP, GIP, GNGT2, C17orf105, FAM171A2, MEIOC, TTLL6, LOC284080, GRN, NA NA NA NA NA NA NA NA NA LTS-035 SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, ASB16-AS1, PRAC2, ITGA2B, ITGA3, ITGB3, KPNB1, CCDC103, RPRML, HOXB-AS3, MIR10A, MIR152, MIR196A1, ADAM11, MEOX1, MPP2, MPP3, MYL4, NFE2L1, NGFR, NMT1, SOST, ABI3, COPZ2, ATP5G1, SLC25A39, HIGD1B, PHB, PNPO, PPY, PYY, ATXN7L3, SLC4A1, UBE2Z, MRPL45P2, SP2, FLJ45513, UBTF, WNT3, WNT9B, FMNL1, C17orf53, TMUB2, PRR15L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ACBD4, DCAKD, DBF4B, CDK5RAP3, SP6, FAM117A, SPOP, TMEM101, PRAC1, SKAP1, MAP3K14, LRRC46, SCRN2, G6PC3, ASB16, EFTUD2, NPEPPS, GOSR2, TBKBP1, CDC27) 0.313868575467586 237 0.0761439127210329 0.84260585104434 8453 0.273645360034061 1 1 0 -7.33320167633466 LTS-035 NA NA NA NA LTS-035 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.13 1 NA NA NA NA NA LTS-035 chr17 48155444 61916045 13760602 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, TOB1, DCAF7, APPBP2, CHAD, TLK2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COL1A1, COX11, DYNLL2, EFCAB3, EME1, CYB561, ANKFN1, MARCH10, TMEM92, ACE, SAMD14, PPM1E, MMD, MTVR2, STXBP4, CACNA1G-AS1, TANC2, OR4D1, C17orf47, GDPD1, HLF, METTL2A, C17orf67, NACA2, SKA2, ITGA3, HILS1, RNF126P1, YPEL2, C17orf82, TOB1-AS1, NA NA NA NA NA NA NA NA NA LTS-035 LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, TACO1, MRPL27, PDK2, MRPS23, PTRH2, LUC7L3, SEPT4, MBTD1, BCAS3, RNF43, MKS1, LINC00483, EPN3, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, PRR11, TEX14, CA10, CCDC47, PSMC5, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, HEATR6, XYLT2, SRSF1, SGCA, WFDC21P, SPATA20, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SCARNA20, SUPT4H1, TBX2, LOC729683, CA4, MIR454, TRIM25, VEZF1, DHX40, ACSF2, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, BRIP1, MYCBPAP, KIF2B, USP32, PPP1R9B, PPM1D, DGKE, ABCC3, CACNA1G, SPAG9, MTMR4, ANKRD40, STRADA, NOG, TSPOAP1, TBX4, MRC2, MED13) 0.32137730977726 150 0.0627532438977206 0.878870982302382 9459 0.216612894329754 2 2 0 -8.4202044901662 LTS-035 NA NA NA NA LTS-035 chr17 61916046 61949389 33344 * c(CSH2, TCAM1P, SMARCD2) NA 0 NA 0.31 1 NA NA NA NA NA LTS-035 chr17 61949390 61974016 24627 * c(CSH1, CSH2, GH2) NA 0 NA 0.268724200772812 57 0.049879089395229 0 NA NA -8.07751801179293 LTS-035 chr17 61974017 61986098 12082 * CSH1 NA 0 NA 0.639 1 NA NA NA NA NA LTS-035 chr17 61986099 66938179 4952081 * c(SNORA38B, LINC00674, MIR3064, MIR5047, ABCA8, GNA13, POLG2, CSHL1, LOC146880, DDX5, CEP112, AMZ2P1, ERN1, BPTF, ARSG, NOL11, PITPNC1, GH1, CACNG5, CACNG4, C17orf58, MILR1, ICAM2, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PECAM1, FAM20A, WIPI1, PRKAR1A, PRKCA, TEX2, PSMD12, SCN4A, SMURF2, SNORA50C, SNORD104, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, PRR29, CD79B, HELZ) 0.298270244251445 44 0.0561416351061225 0.844549148360185 3035 0.18792633947927 1 1 0 -8.05009122505039 LTS-035 chr17 66938180 66970592 32413 * ABCA8 NA 0 NA 1.19 1 NA NA NA NA NA LTS-035 chr17 66970593 74621616 7651024 * c(SMIM6, CD300LD, LOC100287042, LINC00673, MIR3678, MIR3615, RNF157-AS1, SNHG16, MIR4738, MIR4524A, MIR4524B, CDK3, ABCA10, ABCA9, ATP5H, ST6GALNAC2, CD300C, CD300A, CYGB, RNF157, USH1G, CD300LB, KIF19, CD300LF, C17orf77, AANAT, SLC39A11, TRIM65, UNC13D, EVPL, FDXR, FOXJ1, GGA3, EXOC7, ABCA6, ABCA5, KCTD2, WBP2, CDC42EP4, GALK1, NAT9, LINC00469, FADS6, HID1, TSEN54, UBALD2, GRB2, GRIN2C, SAP30BP, H3F3B, NA NA NA NA NA NA NA NA NA LTS-035 NT5C, CDR2L, RAB37, MRPL58, CD300E, OTOP3, GPR142, ZACN, ITGB4, KCNJ2, KCNJ16, BTBD17, LLGL2, KCNJ2-AS1, LINC00511, LOC400620, ACOX1, MRPS7, HN1, SDK2, TMEM104, C17orf80, ST6GALNAC1, GPRC5C, MAP2K6, PRPSAP1, MIF4GD, CASKIN2, SLC25A19, RPL38, UBE2O, CPSF4L, SMIM5, DNAI2, MRPL38, SUMO2, SOX9, SRP68, SSTR2, SNORD1A, SNORD1B, SNORD1C, PRCD, ARMC7, RHBDF2, NUP85, MYO15B, QRICH2, FAM104A, MGC16275, FBF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 UNK, GALR2, SPHK1, TRIM47, SLC16A5, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, TMEM94) 0.318470836278338 142 0.0771179975485587 0.881960487365916 7421 0.22188400945051 2 2 0 -7.67704497534672 LTS-035 NA NA NA NA LTS-035 chr17 74621617 74621954 338 * ST6GALNAC1 NA 0 NA 1.052 1 NA NA NA NA NA LTS-035 chr17 74621955 75484781 862827 * c(MIR4316, SEPT9, METTL23, MGAT5B, JMJD6, MXRA7, ST6GALNAC1, SEC14L1, SRSF2, SNHG20, SCARNA16, MIR636, MFSD11) 0.294535080757139 20 0.0366561188975535 0.954248389466548 698 0.225177152685321 2 2 0 -6.74027876540687 LTS-035 chr17 75484782 75834770 349989 * c(LOC100507351, SEPT9) 0.246 1 NA 0.952383733679561 45 0.16134697225094 2 2 0 -5.77095246464079 LTS-035 chr17 75834771 80363278 4528508 * c(LOC100130370, TNRC6C-AS1, C17orf99, LOC100294362, MIR1250, MIR3065, MIR3186, C1QTNF1-AS1, MIR4739, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, ALYREF, BAIAP2, TMC6, C1QTNF1, PPP1R27, SLC38A10, CANT1, TBC1D16, AFMID, CSNK1D, TEPSIN, RBFOX3, SLC25A10, NOTUM, TMC8, CENPX, LRRC45, FASN, CEP131, GAA, MYADML2, NPB, FSCN2, GCGR, UTS2R, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, NA NA NA NA NA NA NA NA NA LTS-035 BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, LGALS3BP, ARHGDIA, FLJ45079, TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, CCDC40, NPLOC4, CBX8, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, SGSH, ENGASE, TIMP2, TK1, ACTG1, MIR657, ASPSCR1, CARD14, CHMP6, OGFOD3, FAAP100, TSPAN10, CBX2, CBX4, DNAH17, SOCS3, SLC16A3, SYNGR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HGS, CD7, MAFG-AS1, CYTH1, PGS1, AATK, EIF4A3) 0.266749677388621 240 0.0646620857861451 0.971778789680104 7023 0.38724187964373 2 2 0 -6.84607090698178 LTS-035 NA NA NA NA LTS-035 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.92989929933181 39 0.696823652317536 7 NA NA -5.76443237835018 LTS-035 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.755 1 NA NA NA NA NA LTS-035 chr17 80391535 81043175 651641 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.294264948278541 18 0.0639438070302069 0.956144058164603 860 0.220168539551563 2 2 0 -6.73795196883436 LTS-035 chr17 81043176 81083625 40450 * METRNL NA 0 NA 0.980309593485676 21 0.226906567723789 2 NA NA -5.76441021229632 LTS-035 chr18 116845 121139 4295 * ROCK1P1 0.452 1 NA 0.916460810277723 25 0.185305846283021 2 2 0 -5.764746355431 LTS-035 chr18 121140 13760290 13639151 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, CETN1, RALBP1, AFG3L2, RAB31, CIDEA, ADCYAP1, FAM210A, APCDD1, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, CLUL1, GNAL, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, ANKRD62, IMPA2, LINC00668, NDUFV2, TYMSOS, C18orf61, CEP192, ENOSF1, LINC00470, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, NA NA NA NA NA NA NA NA NA LTS-035 PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, MPPE1, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, COLEC12, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, USP14, L3MBTL4, VAPA, DLGAP1, LPIN2, THOC1, PPP4R1) 0.443498507406352 127 0.0867760875116499 1.03842543518509 6236 0.572695608222543 2 1 1 -6.84238051676783 LTS-035 NA NA NA NA LTS-035 chr18 13760291 13760954 664 * RNMT 0.493 1 NA 1.08479794289722 13 0.192227095931496 3 3 0 -5.76448753647916 LTS-035 chr18 13760955 14866503 1105549 * c(MIR3156-2, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.290183956730534 9 0.131725514275372 1.03968410268852 321 0.36074352022341 2 2 0 -6.75162247910306 LTS-035 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.17200148576972 33 0.392432883665243 3 NA NA -5.76444053479248 LTS-035 chr18 18529727 18600054 70328 * ROCK1 0 1 NA 0.975397647502316 133 0.283867922622008 2 2 0 -5.76442129876922 LTS-035 chr18 18600055 63548926 44948872 * c(CDH2, ZSCAN30, SNORD58C, GATA6-AS1, LINC01630, MIR302F, MIR320C1, MIR320C2, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, TCEB3CL2, RPL17-C18orf32, MIR4741, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, LINC-ROR, LINC01544, ACAA2, ZNF271P, MALT1, MAPRE2, POLI, ESCO1, OSBPL1A, HAUS1, ALPK2, LOXHD1, INO80C, TTC39C, PSMA8, STARD6, C18orf25, CCBE1, SLC25A52, NA NA NA NA NA NA NA NA NA LTS-035 DSG4, AQP4-AS1, ANKRD29, C18orf54, TCEB3C, DCC, ABHD3, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, RNF152, LINC00305, FECH, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, CABYR, GATA6, SNORD58B, SNORD58A, CDH20, KCTD1, DYNAP, BOD1L2, LINC00907, SIGLEC15, HMSD, LOC284294, GRP, ST8SIA5, C18orf8, RAX, CXXC1, CPLX4, AQP4, CCDC178, OACYLP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LAMA3, LMAN1, LINC01538, MIR1-2, MIR122, MIR133A1, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MC4R, ME2, MEP1B, WBP11P1, MYO5B, NARS, NPC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, IMPACT, ELAC1, MAPK4, CELF4, MIB1, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RBBP8, HRH4, BCL2, RIT2, ROCK1, RPL17, SERPINB3, SERPINB4, KC6, CTAGE1, GAREM1, MIR924HG, SKOR2, SLC14A1, SNRPD1, SS18, SCARNA17, SNORA37, SYT4, TAF4B, TCF4, TTR, PCAT18, LOC729950, ZNF24, GREB1L, FHOD3, CCDC68, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, MRO, HDHD2, ZNF397, TMEM241, SERPINB7, NOL4, RIOK3, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, PIAS2, SEC11C, CABLES1, B4GALT6, TXNL1, LIPG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ONECUT2, VPS4B, CTIF) 0.44782125454423 335 0.0710135673620619 1.03182955807124 16804 0.289508845502678 2 1 1 -7.54762552859205 LTS-035 NA NA NA NA LTS-035 chr18 63548927 66346776 2797850 * c(MIR5011, CDH19, TMX3, LOC643542, DSEL) 0.378549168114407 3 0.0345880518869354 1.21064452111427 412 0.340409012613461 3 2 1 -7.04481420636468 LTS-035 chr18 66346777 66346791 15 * TMX3 NA 0 NA 0.974 1 NA NA NA NA NA LTS-035 chr18 66346792 77917264 11570473 * c(PARD6G-AS1, LOC100131655, LINC01541, LOC100505817, RBFADN, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, TIMM21, LOC339298, ATP9B, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, TMX3, ZNF407, CNDP2, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NETO1, PARD6G, CNDP1, CTDP1, SOCS6, ZNF516) 0.459601875612276 73 0.0339934970054653 1.0011749197102 3249 0.25208598607345 2 1 1 -7.342092924029 LTS-035 chr18 77917265 78005362 88098 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.959053527428842 61 0.157406808234868 2 NA NA -5.76539756003157 LTS-035 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.434 1 NA 1.05294821131993 17 0.260607209507064 2 2 0 -5.77240425983889 LTS-035 chr19 282754 8615153 8332400 * c(LOC100128568, C19orf71, LOC100128573, DPP9-AS1, PET100, MED16, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR3187, MIR4321, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4747, MIR4746, MIR4745, MIR4999, EBI3, PLIN3, FSTL3, APC2, CLEC4M, ABCA7, HMG20B, TUBB4A, TIMM44, SEMA6B, PNPLA6, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, CIRBP, EVI5L, GRIN3B, MRPL54, LRG1, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, TMIGD2, TNFAIP8L1, NA NA NA NA NA NA NA NA NA LTS-035 ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, MISP, CNN2, PLK5, C2CD4C, ZNF358, CSNK1G2, TICAM1, CIRBP-AS1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, CFD, ANKRD24, ARID3A, EEF2, EFNA2, ELANE, ELAVL1, MCEMP1, ADGRE1, FCER2, SBNO2, KDM4B, ZFR2, ARHGEF18, PIP5K1C, ARHGAP45, FUT3, FUT5, FUT6, CBARP, CSNK1G2-AS1, KANK3, TINCR, CATSPERD, SHC2, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FGF22, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MBD3L5, ODF3L2, MKNK2, GPX4, UHRF1, GTF2F1, SLC39A3, GZMM, CD209, ADGRE4P, ADAMTSL5, CLEC4G, TMPRSS9, INSR, NDUFS7, C19orf35, HSD11B1L, C19orf45, LYPLA2P2, ONECUT3, MEX3D, PRSS57, VMAC, CTXN1, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, CLEC4GP1, MYO1F, GADD45B, HNRNPM, NDUFA7, NFIC, NRTN, OAZ1, FLJ25758, PALM, ANGPTL4, MARCH2, CD320, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 THEG, ATP5D, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, BTBD2, RNF126, CCDC94, MYDGF, MAP2K2, MAP2K7, PSPN, PRTN3, AZU1, RETN, NCLN, GPR108, SPPL2B, DUS3L, XAB2, SHD, MCOLN1, PTBP1, WDR18, REXO1, CAMSAP3, PTPRS, ZNF77, CACTIN, RFX2, CELF5, HCN2, RPS15, RPS28, SAFB, CCL25, SGTA, LINGO3, ARRDC5, SH3GL1, MBD3L4, MBD3L3, SNAPC2, STK11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 STXBP2, BSG, TBXA2R, TCF3, MIR637, THOP1, TLE2, C3, PLIN4, VAV1, SLC25A23, FSD1, ZNF557, CERS4, TLE6, PLPPR3, DENND1C, ZNF556, LRRC8E, PRR36, UBXN6, ACSBG2, MADCAM1, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, PRAM1, ALKBH7, ZNF414, DOT1L, FBN3, KISS1R, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, PLPP2, S1PR4, TNFSF14, TNFSF9, AP3D1, MIDN, DPP9, R3HDM4, TMEM259, TPGS1, RAB11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CRB3, REEP6, PEX11G, TRIP10, LONP1, APBA3, SAFB2, CD70, CDC34) 0.423290699232159 464 0.0756373777775914 0.872764520127088 14648 0.230209874627049 2 1 1 -7.78885091550836 LTS-035 NA NA NA NA LTS-035 chr19 8615154 8615252 99 * MYO1F NA 0 NA 0.917 1 NA NA NA NA NA LTS-035 chr19 8615253 8999101 383849 * c(ZNF558, ACTL9, OR2Z1, MYO1F, ADAMTS10, MBD3L1, MUC16) 0.457736284358597 14 0.0332877068686239 0.924872005624666 408 0.244611293228697 2 1 1 -7.27053809156722 LTS-035 chr19 8999102 9000185 1084 * MUC16 0.278 1 NA 0.995057827923136 9 0.460334389330191 2 2 0 -5.76441085606791 LTS-035 chr19 9000186 9012918 12733 * MUC16 0.33236882446662 14 0.177485628577776 1.06073755972624 110 0.615019149196374 4 3 1 -6.74259400500069 LTS-035 chr19 9012919 9015438 2520 * MUC16 0.5 1 NA 0.980607225762433 13 0.258385817662717 2 2 0 -5.76441014604482 LTS-035 chr19 9015439 9226192 210754 * c(OR7G1, OR1M1, OR7G2, MUC16) 0.458598073114437 57 0.0338940003266856 0.980396678337031 970 0.468069478814242 2 1 1 -7.26554423391922 LTS-035 chr19 9226193 9236886 10694 * c(OR7G1, OR7G3) 0.423 1 NA 1.01454593509356 15 0.182834299168348 2 2 0 -5.76464167401807 LTS-035 chr19 9236887 9408033 171147 * c(OR7D4, OR7D2, OR7E24, ZNF699, OR7G3, ZNF317) 0.456239886703552 4 0.0340917878674615 0.918606840194948 186 0.170317114781014 2 1 1 -7.20808060328353 LTS-035 chr19 9408034 11945266 2537233 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, ZNF559-ZNF177, AP1M2, MIR4748, CDKN2D, CARM1, ZNF266, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, CNN1, ILF3-AS1, ZNF560, SPC24, ZNF846, DNM2, DNMT1, ELAVL3, ZNF627, EPOR, C19orf38, KANK2, TSPAN16, ZNF561-AS1, ICAM1, ICAM3, ICAM4, ILF3, ZNF699, TMEM205, C3P1, LDLR, ZNF833P, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, NA NA NA NA NA NA NA NA NA LTS-035 ECSIT, PDE4A, PIN1, S1PR5, ACP5, ZNF562, FBXL12, C19orf66, ZNF823, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, UBL5, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, ZNF812P, TYK2, ZNF121, ZNF177, YIPF2, ZNF426, QTRT1, ANGPTL6, ELOF1, ZNF559, ATG4D, EIF3G, C19orf52, S1PR2, ZNF561, OLFM2, RAB3D, KEAP1) 0.42339345145022 105 0.0942588818795704 0.874962496025214 4915 0.246279536201941 2 1 1 -7.03919190535937 LTS-035 NA NA NA NA LTS-035 chr19 11945267 11945466 200 * ZNF440 0.334 1 NA 1.0369186155455 5 0.544636759684838 2 2 0 -5.76441142170436 LTS-035 chr19 11945467 12502787 557321 * c(ZNF625-ZNF20, ZNF440, ZNF563, ZNF433, ZNF763, ZNF844, ZNF788, ZNF44, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.279710801360348 9 0.214919170852672 0.871120738287355 987 0.39291425255813 2 2 0 -6.76588191445574 LTS-035 chr19 12502788 12540509 37722 * ZNF799 0.368 1 NA 0.927519335918757 15 0.231537860732065 2 2 0 -5.76568456677621 LTS-035 chr19 12540510 13056880 516371 * c(ZNF443, RNASEH2A, KLF1, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, FARSA, MAST1, SYCE2, GCDH, SNORD41, HOOK2, TNPO2, JUNB, MAN2B1, ASNA1, WDR83OS, BEST2, ZNF490, RAD23A, PRDX2, C19orf43, CALR, RTBDN, FBXW9, WDR83) 0.406253689417194 15 0.058690309088915 0.870870507595503 1566 0.195141873994303 2 1 1 -6.90603214792554 LTS-035 chr19 13056881 13058588 1708 * RAD23A NA 0 NA 1.038 1 NA NA NA NA NA LTS-035 chr19 13058589 24345092 11286504 * c(HAVCR1P1, ZNF730, ZNF737, TMEM221, MEF2B, ZNF729, MIR1470, MIR1270, MIR3188, MIR3189, LOC100507373, SUGP2, DDX39A, AKAP8, B3GNT3, KLF2, IFI30, CHERP, CERS1, GIPC1, ILVBL, CYP4F8, NACC1, COPE, MISP3, ZNF257, PGLYRP2, CCDC124, NXNL1, CIB3, RLN3, CALR3, LRRC25, OR1I1, NR2C2AP, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, LINC00905, ZNF676, ZNF100, SSBP4, NA NA NA NA NA NA NA NA NA LTS-035 ZNF431, ZNF675, DAND5, ZNF626, FAM129C, NR2F6, ADGRL1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, TMEM59L, PGLS, LSM4, FAM32A, OR7A17, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, AKAP8L, ARRDC2, CPAMD8, OR10H5, NWD1, SLC25A42, LINC00663, ZNF493, LOC284454, C19orf53, BABAM1, ADGRE2, DNAJB1, NANOS3, PALM3, ZNF429, IL12RB1, INSL3, JAK3, JUND, YJEFN3, SLC27A1, KCNN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CLEC17A, CYP4F24P, ZNF728, RPSAP58, OR7A10, LINC00664, HAPLN4, CYP4F3, LYL1, MIR181C, BORCS8-MEF2B, RAB8A, ZNF506, GOLGA2P9, ZNF724, MYO9B, NDUFB7, NFIX, NOTCH3, NDUFA13, GMIP, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, GATAD2A, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, TRMT1, PRKACA, ASF1B, PKN1, USE1, ZNF253, ATP13A1, PTGER1, MIR181D, ZNF492, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 UPF1, RFX1, RPL18A, LOC641367, C19orf67, RASAL3, MRPL34, SLC1A6, ZSWIM4, SLC5A5, UCA1, CYP4F12, ZNF826P, BST2, MIR639, TPM4, LOC729966, BORCS8, ZNF726, UBA52, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, CACNA1A, ZNF208, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, ZNF430, PBX4, KIAA1683, CCDC130, ELL, ZNF93, PLVAP, USHBP1, TSSK6, C19orf44, MRI1, ZNF333, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ADGRE3, GTPBP3, MPV17L2, HSH2D, CYP4F2, SYDE1, RFXANK, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF486, ZNF682, LPAR2, CRLF1, HAUS8, MVB12A, ARMC6, ZNF101, MED26, HOMER3, IL27RA, GDF15, TECR, ZNF254, IER2, ADGRE5) 0.444258439846735 298 0.0802204055024314 1.00058852630764 12794 0.268229288325877 2 1 1 -6.80748003048384 LTS-035 NA NA NA NA LTS-035 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.809543638245587 3 0.0600444279957211 1 NA NA -5.76441701335743 LTS-035 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.205 1 NA 1.32965762682321 5 0.655254912228821 4 4 0 -5.76712441685618 LTS-035 chr19 29567135 32131036 2563902 * c(THEG5, POP4, LOC284395, VSTM2B, TSHZ3, UQCRFS1, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.118190791758254 8 0.0189618978857226 4.28304858291148 548 0.974135370647161 18 17 1 -6.73636020849339 LTS-035 chr19 32131037 33409335 1278299 * c(SLC7A9, DPY19L3, ZNF507, RGS9BP, NUDT19, LOC400684, ANKRD27, CEP89, PDCD5, TDRD12) 0.134853434299601 6 0.0178288156271432 3.70056219481721 607 1.29969065011451 15 14 1 -6.73881751891301 LTS-035 chr19 33409336 33414311 4976 * CEP89 NA 0 NA 5.048 1 NA NA NA NA NA LTS-035 chr19 33414312 34584137 1169826 * c(CEBPA, CEBPG, WDR88, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, CEP89, RHPN2, FAAP24) 0.118748801385074 16 0.0615271958838799 5.42852731130454 684 1.3608416865622 19 18 1 -6.75798379633969 LTS-035 chr19 34584138 34700045 115908 * LSM14A NA 0 NA 5.05989185030682 25 1.0363239406672 20 NA NA -5.765009406455 LTS-035 chr19 34700046 34706072 6027 * LSM14A NA 0 NA 2.473 1 NA NA NA NA NA LTS-035 chr19 34706073 34710532 4460 * LSM14A 0.218 1 NA 2.58538978710311 15 0.681641841438743 10 10 0 -5.76441013679354 LTS-035 chr19 34710533 35851352 1140820 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, MIR5196, WTIP, ZNF792, ZNF599, FAM187B, LGI4, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, HAMP, SCN1B, SCGB1B2P, USF2, PDCD2L, ZNF30, CD22, KIAA0355) 0.275526986396822 46 0.0727463098986109 1.89649620323851 1619 0.495238808311948 6 5 1 -6.74362214223778 LTS-035 chr19 35851353 35862196 10844 * FFAR3 NA 0 NA 0.033 1 NA NA NA NA NA LTS-035 chr19 35862197 35863609 1413 * character(0) NA 0 NA 0.503838125517391 39 0.516620532527386 0 NA NA -5.76447021272973 LTS-035 chr19 35863610 35863627 18 * character(0) NA 0 NA 1.188 1 NA NA NA NA NA LTS-035 chr19 35863628 37677748 1814121 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF567, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, NPHS1, ATP4A, POLR2I, PSENEN, LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, NA NA NA NA NA NA NA NA NA LTS-035 OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.275168681186199 109 0.0641841040950525 1.89770085684181 3577 0.486773030593418 6 5 1 -6.75071729106696 LTS-035 NA NA NA NA LTS-035 chr19 37677749 37689998 12250 * ZNF585B 0.251 1 NA 1.97110194063348 25 0.398122573252677 7 7 0 -5.76441220633553 LTS-035 chr19 37689999 37880931 190933 * c(ZNF383, LOC284412, HKR1, ZNF527, ZNF585B) 0.219828062454177 2 0.0205060966544099 1.9587334255603 177 0.393164300572265 8 7 1 -6.77062859929741 LTS-035 chr19 37880932 37881216 285 * ZNF527 NA 0 NA 2.993 1 NA NA NA NA NA LTS-035 chr19 37881217 40384193 2502977 * c(LOC100129935, ZNF571-AS1, MIR4530, LOC100631378, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, ZNF573, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, ZNF569, ZNF570, ZNF781, EID2, ZNF540, ECH1, GGN, FBL, ZFP30, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, ZNF571, PAF1, SARS2, SAMD4B, NA NA NA NA NA NA NA NA NA LTS-035 MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, LOC644554, PLEKHG2, LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, WDR87, ZNF527, ZNF607, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.207196338289826 71 0.0647921052398242 2.38139691280558 4378 0.766198339360069 9 8 1 -6.73347255905543 LTS-035 NA NA NA NA LTS-035 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.074 1 NA NA NA NA NA LTS-035 chr19 40389650 40399881 10232 * FCGBP NA 0 NA 0.288150942646695 39 0.297449048699436 0 NA NA -5.79786580348033 LTS-035 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 3.948 1 NA NA NA NA NA LTS-035 chr19 40405935 40719923 313989 * c(ZNF780B, ZNF780A, ZNF546, MAP3K10, PSMC4, FCGBP) 0.249440830637611 3 0.0460144904712997 2.17310106935463 592 0.514889641576313 7 6 1 -6.74057097935685 LTS-035 chr19 40719924 40719929 6 * MAP3K10 NA 0 NA 3.125 1 NA NA NA NA NA LTS-035 chr19 40719930 41533631 813702 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2B6, CYP2B7P, AKT2, CYP2G1P, PLD3, C19orf54, SERTAD3, SERTAD1, MAP3K10, RAB4B, PRX, SPTBN4, BLVRB, SNRPA, MIR641, COQ8B, CNTD2, ITPKC, MIA, LTBP4, NUMBL, SHKBP1) 0.225364659043318 29 0.0732354829341019 2.56662833901819 1767 0.593144554392915 8 7 1 -6.76885569510234 LTS-035 chr19 41533632 41557913 24282 * CYP2A7 NA 0 NA 1.211 1 NA NA NA NA NA LTS-035 chr19 41557914 41626441 68528 * c(CYP2A13, CYP2F1) 0.329 1 NA 1.63939565992711 59 0.462218815910186 5 5 0 -5.7646497369497 LTS-035 chr19 41626442 41627868 1427 * CYP2F1 0.217 1 NA 0.94463200339343 7 0.303018072696914 2 2 0 -5.76442266279853 LTS-035 chr19 41627869 41628677 809 * CYP2F1 0.33 1 NA 0.918953903303137 7 0.613822643843674 2 2 0 -5.76441544235275 LTS-035 chr19 41628678 49878196 8249519 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4324, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, DACT3-AS1, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, CEACAM7, CEACAM8, NA NA NA NA NA NA NA NA NA LTS-035 CEACAM4, KDELR1, HNRNPUL1, CLASRP, KPTN, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CEACAM20, NTN5, IRGQ, ZNF428, CRX, PPM1N, KLC3, IGSF23, LYPD4, DACT3, SIX5, IGFL2, CYP2F1, DBP, ZNF296, DEDD2, ZNF114, SPACA4, DMPK, DMWD, MEGF8, CADM4, EMP3, ERCC1, ERCC2, ERF, CARD8, CIC, ZC3H4, FBXO46, ETHE1, FOSB, SYNGR4, PRG1, CBLC, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FGF21, GIPR, ZNF285, LYPD3, BBC3, DKKL1, C5AR2, DHDH, GPR4, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNA7, B3GNT8, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 IGFL3, PINLYP, LHB, LIG1, LIPE, BCAM, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, HSD17B14, PLAUR, POU2F2, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, AXL, SMG9, IRGC, CABP5, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, CD177, PTGIR, PNMAL2, PLEKHA4, MARK4, BAX, PVR, NECTIN2, BCAT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 BCKDHA, RELB, BCL3, RPL18, RPS19, RTN2, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, TGFB1, C5AR1, TULP2, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, GEMIN7, OPA3, B9D2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CALM3, RSPH6A, SYMPK, TEX101, GRWD1, CCDC8, ZNF541, CNFN, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, CYTH2, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34, CD79A) 0.34799365601656 308 0.0805747913345359 0.798084167969259 13395 0.254237285692734 1 1 0 -6.81535693283409 LTS-035 NA NA NA NA LTS-035 chr19 49878197 49900986 22790 * c(CCDC155, DKKL1) NA 0 NA 0.791833804201555 29 0.330238262993293 1 NA NA -5.76444345482399 LTS-035 chr19 49900987 49901201 215 * CCDC155 NA 0 NA 1.423 1 NA NA NA NA NA LTS-035 chr19 49901202 49920805 19604 * CCDC155 0.148 1 NA 1.21303923368337 63 0.273437036825736 3 3 0 -5.76452432096715 LTS-035 chr19 49920806 50209086 288281 * c(GFY, MIR5088, PTH2, CPT1C, ALDH16A1, CCDC155, ADM5, FCGRT, FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, PRMT1, IRF3, MIR150, NOSIP, PIH1D1, PRRG2, SLC17A7, RCN3, PRR12, SCAF1, RPS11, RRAS, BCL2L12, SNORD35B) 0.192934543432324 15 0.0439214667115664 1.34315568075756 997 0.306139960244833 5 5 0 -6.81416827665969 LTS-035 chr19 50209087 50209095 9 * CPT1C 0.224 1 NA 0.845 1 NA NA NA NA NA LTS-035 chr19 50209096 50316024 106929 * c(CPT1C, AP2A1, TSKS, FUZ) NA 0 NA 1.10783767657299 296 0.205120018915443 3 NA NA -5.77060601932652 LTS-035 chr19 50316025 50316146 122 * FUZ NA 0 NA 0.914 1 NA NA NA NA NA LTS-035 chr19 50316147 50412417 96271 * c(PTOV1-AS1, MIR4749, MIR4750, PNKP, NUP62, IL4I1, PTOV1, TBC1D17, FUZ, MED25, AKT1S1) 0.38 1 NA 0.791901284521416 485 0.180024721565908 1 1 0 -5.76488872042485 LTS-035 chr19 50412418 52133720 1721303 * c(SNAR-F, LOC100129083, SNAR-B2, SNAR-D, MIR4751, KLK11, KLK8, FAM71E1, SIGLEC11, CLDND2, JOSD2, IZUMO2, VSIG10L, C19orf84, ETFB, ATF5, NUP62, NAPSB, KLK5, ZNF473, IL4I1, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KCNC3, KLK1, KLK2, LIM2, SIGLEC16, LOC400710, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, VRK3, POLD1, ASPDH, KLK15, KLK7, KLK6, NA NA NA NA NA NA NA NA NA LTS-035 KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, NR1H2, ZNF175, MYH14, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, NAPSA, KLK4) 0.336503066489745 92 0.100836003815859 0.815186310659648 3111 0.29419648124983 1 1 0 -6.81663738499477 LTS-035 NA NA NA NA LTS-035 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.534 1 NA NA NA NA NA LTS-035 chr19 52146303 52196924 50622 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) NA 0 NA 1.3183857933006 40 0.588638365756961 4 NA NA -5.76460284761061 LTS-035 chr19 52196925 54725785 2528861 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, LILRB3, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, NA NA NA NA NA NA NA NA NA LTS-035 ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.331038014939682 107 0.0880786326522438 0.806040620093822 4062 0.273879478895047 1 1 0 -6.8620559249339 LTS-035 NA NA NA NA LTS-035 chr19 54725786 54746051 20266 * c(LILRB3, LILRA6) 0.221927623356505 4 0.118881944241616 1.75446070673214 57 0.808058320139622 8 7 1 -6.73417152640414 LTS-035 chr19 54746052 54746076 25 * c(LILRB3, LILRA6) NA 0 NA 0.97 1 NA NA NA NA NA LTS-035 chr19 54746077 55266593 520517 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, LAIR1, LAIR2, TTYH1, LILRP2, LILRA6, KIR3DX1, LENG9) 0.315283404227732 33 0.13536525364339 0.769970617717835 1097 0.270890737496502 1 1 0 -6.82433153248283 LTS-035 chr19 55266594 55278697 12104 * c(KIR2DL1, KIR2DL3, KIR2DS4) NA 0 NA 1.285 1 NA NA NA NA NA LTS-035 chr19 55278698 55359405 80708 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.338105520851518 47 0.0892643435769712 1.53503704496177 199 0.743685849542675 7 5 2 -6.74466292915036 LTS-035 chr19 55359406 55361932 2527 * c(KIR2DS4, KIR3DL1, KIR3DL2) NA 0 NA 0.599 1 NA NA NA NA NA LTS-035 chr19 55361933 59082368 3720436 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, RNU6-64P, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, NA NA NA NA NA NA NA NA NA LTS-035 FKBP1AP1, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264, NCR1) 0.343871223762351 190 0.0934957980015316 0.814296985455372 7304 0.345566600666563 1 1 0 -6.81020181285304 LTS-035 NA NA NA NA LTS-035 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 0.741256749234169 15 0.0583358094712559 1 NA NA -5.76512086269569 LTS-035 chr20 68260 76962 8703 * DEFB125 0.499 1 NA 1.12107041970969 11 0.371473234077993 3 3 0 -5.7645120621098 LTS-035 chr20 76963 1559003 1482041 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB125, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, DEFB126, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.450005887577138 79 0.0615149488511929 1.01420633081403 1958 0.358768976836795 2 1 1 -6.83723522437998 LTS-035 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.556 1 NA NA NA NA NA LTS-035 chr20 1559182 1586631 27450 * SIRPB1 NA 0 NA 0.148555085934557 39 0.146189827235155 0 NA NA -6.92902108023026 LTS-035 chr20 1586632 1591938 5307 * SIRPB1 NA 0 NA 1.304 1 NA NA NA NA NA LTS-035 chr20 1591939 25595123 24003185 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LINC01432, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, CST8, ISM1-AS1, LINC00658, SIRPB1, SEC23B, NOP56, CENPB, POLR3F, RBBP9, DSTN, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SLX4IP, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, ISM1, CST11, SIRPA, STK35, ADRA1D, CST1, CST2, NA NA NA NA NA NA NA NA NA LTS-035 CST3, CST4, CST5, PRNT, LINC00654, C20orf196, LRRN4, CST13P, JAG1, LINC00656, XRN2, UBOX5, BTBD3, CD93, NINL, PLCB1, PRND, FLRT3, LAMP5, SPEF1, C20orf194, CFAP61, ABHD12, SNX5, GNRH2, LOC284788, LOC284798, TMEM230, LINC00652, NXT1, VSX1, FOXA2, LOC339593, IDH3B, TGM6, INSM1, ITPA, LINC00493, FLJ33581, MIR103A2, LINC00851, NKX2-2, OXT, PAX1, PCNA, NAA20, PCSK2, CRNKL1, ESF1, TRMT6, PDYN, PLCB4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, DZANK1, SPTLC3, AP5S1, SIRPG, FERMT1, KIF16B, TASP1, KIZ, PRNP, TMX4, GPCPD1, CPXM1, OTOR, APMAP, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, PTPRA, PYGB, OVOL2, FASTKD5, RRBP1, BFSP1, NAPB, ANKEF1, GFRA4, LOC643406, GZF1, NKX2-4, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SSTR4, SNORA51, SNORD17, SNORD110, TGM3, THBD, LINC01433, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ZNF133, NDUFAF5, ZNF343, SYNDIG1, PANK2, ADAM33, SEL1L2, MKKS, SLC4A11, MCM8, ACSS1, ATRN, CST7, CDS2, GGTLC1, MGME1, DTD1, ENTPD6, LZTS3, RASSF2, GINS1, CDC25B, SLC23A2) 0.441208374147857 297 0.079733540942238 1.03736958827915 12390 0.381284585915077 2 1 1 -7.06267653780207 LTS-035 NA NA NA NA LTS-035 chr20 25595124 25595466 343 * NANP 0.323 1 NA 0.8583503982452 7 0.0825550321502773 1 1 0 -5.76469319680249 LTS-035 chr20 25595467 26063684 468218 * c(LOC100134868, NANP, ZNF337, FAM182A, FAM182B) 0.388581677184107 15 0.0719508430077356 1.08102154172123 183 0.373082066209385 3 2 1 -6.77527443884911 LTS-035 chr20 26063685 26063687 3 * FAM182A NA 0 NA 0.692 1 NA NA NA NA NA LTS-035 chr20 26063688 26188981 125294 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.306232128473926 15 0.0981780210104268 0.792790738940789 40 0.449405418445534 2 2 0 -6.75764956361517 LTS-035 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.719 1 NA NA NA NA NA LTS-035 chr20 29625845 29625876 32 * FRG1BP 0.326 1 NA 1.375 1 NA NA NA NA NA LTS-035 chr20 29625877 29652105 26229 * c(MLLT10P1, FRG1BP) 0.315255772831137 16 0.117502748194812 1.04073301077181 38 0.375026587962135 2 2 0 -6.75134981244415 LTS-035 chr20 29652106 29966275 314170 * c(DEFB118, DEFB115, DEFB116, DEFB119, FRG1BP) 0.478 1 NA 1.04341522891753 69 0.335936033091228 2 2 0 -5.77098872025973 LTS-035 chr20 29966276 33863030 3896755 * c(MCTS2P, MIR3193, MIR499B, MIR4755, HM13-AS1, PROCR, MMP24, PXMP4, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, BPIFA2, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, RALY, MAPRE1, TPX2, NCOA6, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, TRPC4AP, GGT7, C20orf203, REM1, GSS, HCK, BPIFA4P, ID1, XKR7, BPIFB3, NA NA NA NA NA NA NA NA NA LTS-035 ASIP, BPIFA1, CDK5RAP1, PLAGL2, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, BCL2L1, NECAB3, SNTA1, MIR644A, BPIFB2, HM13, PDRG1, DYNLRB1, ITCH, MAP1LC3A, COX4I2, ZNF341, MYLK2, EIF2S2, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.439027595897031 77 0.0963136803215835 1.03890605497091 5311 0.297123161966329 2 1 1 -6.83455306779766 LTS-035 NA NA NA NA LTS-035 chr20 33863031 35882829 2019799 * c(TGIF2-C20orf24, RBM12, MMP24-AS1, MYL9, MMP24, CEP250, FAM83C, MROH8, SOGA1, TLDC2, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, EIF6, PHF20, SCAND1, ERGIC3, UQCC1, EDEM2, C20orf24, NDRG3, RBL1, TGIF2, RPN2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.444936777583486 82 0.0693844543053213 0.979711899028037 3408 0.253275834004989 2 1 1 -6.78120893520826 LTS-035 chr20 35882830 35884700 1871 * GHRH NA 0 NA 1.119 1 NA NA NA NA NA LTS-035 chr20 35884701 43348735 7464035 * c(ADA, LOC100287792, MIR3646, OSER1-AS1, LINC00489, SGK2, BLCAP, SERINC3, PTPRT, PKIG, VSTM2L, SNHG11, FITM2, SLC32A1, R3HDML, ADIG, GTSF1L, ZHX3, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, GHRH, HNF4A, LOC339568, ARHGAP40, SNHG17, LBP, MYBL2, NNAT, IFT52, OSER1, PLCG1, CTNNBL1, RALGAPB, JPH2, RPRD1B, DHX35, MANBAL, SRSF6, LPIN3, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, TOP1, GDAP1L1, LINC01260, TTPAL, NA NA NA NA NA NA NA NA NA LTS-035 ACTR5, FAM83D, CHD6, TOX2, KIAA1755, WISP2, EMILIN3, TTI1, MAFB) 0.456892622880093 92 0.0596002209341855 1.02118582443977 4873 0.235986344196335 2 1 1 -7.03195360503338 LTS-035 NA NA NA NA LTS-035 chr20 43348736 43356156 7421 * c(LINC01260, WISP2) 0.413 1 NA 1.25212027998528 21 0.19884897355962 3 3 0 -5.76479742643829 LTS-035 chr20 43356157 43707849 351693 * c(STK4-AS1, TOMM34, RIMS4, KCNK15, STK4, YWHAB, LINC01260, PABPC1L, WISP2) 0.291056984677389 9 0.235120595534386 1.03843021779835 547 0.254987972755858 2 2 0 -6.74409077514574 LTS-035 chr20 43707850 43721744 13895 * c(KCNS1, STK4) 0.427 1 NA 0.957989344442445 33 0.230053481100953 2 2 0 -5.7644907703967 LTS-035 chr20 43721745 45817223 2095479 * c(ACOT8, ZNF663P, MIR3616, EPPIN-WFDC6, WFDC2, SPINT3, UBE2C, TP53RK, RBPJL, DNTTIP1, WFDC12, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, WFDC5, WFDC13, EYA2, WFDC11, WFDC9, TP53TG5, WFDC10B, KCNS1, SPINT4, MMP9, SLC35C2, PIGT, PI3, PLTP, CTSA, ZNF334, DBNDD2, EPPIN, SLC12A5, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLC13A3, SLPI, TNNC2, SYS1-DBNDD2, MKRN7P, SLC2A10, MATN4, NA NA NA NA NA NA NA NA NA LTS-035 SYS1, WFDC8, SNX21, ZSWIM1, CD40) 0.445257182612919 85 0.0845216926392902 1.02613194394423 3137 0.251232252006068 2 1 1 -6.80865864707056 LTS-035 NA NA NA NA LTS-035 chr20 45817224 46365716 548493 * c(LOC100131496, EYA2, ZMYND8, SULF2, NCOA3) 0.41532025293412 7 0.0477139292829573 1.68131922814433 526 0.359878562635075 5 3 2 -6.74245560747107 LTS-035 chr20 46365717 46385967 20251 * SULF2 NA 0 NA 1.316 1 NA NA NA NA NA LTS-035 chr20 46385968 62907521 16521554 * c(UCKL1-AS1, SNORD12B, MIR298, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1914, MIR1257, MIR4325, MIR3194, MIR4326, MIR3196, MTRNR2L3, LOC100506384, RTEL1-TNFRSF6B, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, TRERNA1, ARFRP1, OGFR-AS1, RGS19, SYCP2, CEBPB, ARFGEF2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, FAM210B, PHACTR3, BHLHE23, NKAIN4, NA NA NA NA NA NA NA NA NA LTS-035 TSHZ2, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, ZBTB46, GCNT7, CBLN4, CTCFL, SAMD10, ABHD16B, FAM65C, RBBP8NL, CSE1L, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, EEF1A2, LKAAEAR1, FAM209A, SLC9A8, ADNP, SPO11, PRPF6, C20orf166-AS1, SS18L1, MTG2, GMEB2, SNORD12C, MOCS3, GNAS, SLCO4A1, NPBWR2, LINC00176, LINC00494, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, KCNQ2, TMEM189, TMEM189-UBE2V1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, ZFAS1, MYT1, NFATC2, NTSR1, OPRL1, STMN3, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, RTEL1, PFDN4, SOX18, YTHDF1, LIME1, UCKL1, GID8, PPP1R3D, PCMTD2, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, ZFP64, ARFGAP1, DOK5, RNF114, SULF2, SLC2A4RG, PSMA7, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, ZNF512B, PTK6, PREX1, COL20A1, PTPN1, CDH26, RPS21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SLC17A9, LOC63930, FAM217B, BMP7, SNAI1, SRMS, STAU1, AURKA, TAF4, TCEA2, SNORD12, MIR645, MIR647, TFAP2C, TPD52L2, UBE2V1, HAR1A, HAR1B, ZNF217, FNDC11, PPDPF, BIRC7, NPEPL1, DNAJC5, TUBB1, ZBP1, CABLES2, PARD6B, ZGPAT, RAE1, BCAS1, HELZ2, STX16, TNFRSF6B, DPM1, VAPB, B4GALT5, SPATA2, OSBPL2) 0.433866170720187 315 0.0720688442364269 1.11870714216189 13336 0.293518681021854 3 2 1 -7.15419637425606 LTS-035 NA NA NA NA LTS-035 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.01521417516465 11 0.322240847249947 2 NA NA -5.76478496512669 LTS-035 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.48 1 NA 0.504102230328278 18 0.715834010134584 0 0 0 -5.76620220313818 LTS-035 chr21 9907272 11098723 1191452 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.363899191651243 43 0.0954263325245811 1.14587360992071 167 0.630885167508256 4 3 1 -6.8029869333725 LTS-035 chr21 11098724 11098768 45 * c(BAGE, BAGE3) NA 0 NA 1.17373044985811 3 0.117202104645494 3 NA NA -5.76441020383489 LTS-035 chr21 14745307 14756794 11488 * character(0) 0.446 1 NA 0.981439765984586 9 0.584427497641923 2 2 0 -5.7644101836371 LTS-035 chr21 14756795 17135266 2378472 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, USP25, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.43985341215255 14 0.0439240728510481 0.979904612164926 616 0.262854722563031 2 1 1 -6.79910734107156 LTS-035 chr21 17135267 17603449 468183 * c(USP25, MIR99AHG) 0.425 1 NA 1.2051764706731 172 0.350169942422378 3 3 0 -5.76536702959258 LTS-035 chr21 17603450 17763900 160451 * MIR99AHG NA 0 NA 0.716 1 NA NA NA NA NA LTS-035 chr21 17763901 48084820 30320920 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, ITGB2-AS1, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, RNU6-67P, BRWD1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, BTG3, HSF2BP, ADAMTS5, LINC00310, LINC00313, NA NA NA NA NA NA NA NA NA LTS-035 B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CHODL, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, KRTAP10-10, IL10RB, ITGB2, KCNE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 KCNJ6, KCNJ15, PICSAR, LINC00317, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, MIR99AHG, KRTAP26-1, LINC00114, LSS, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, ATP5O, BRWD1, SLC37A1, PCBP3, C21orf58, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, LOC642852, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, SON, SNORA80A, TFF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.418612521606556 544 0.0788206777674287 0.901605397318994 18594 0.327045297144434 2 1 1 -7.73218483785136 LTS-035 NA NA NA NA LTS-035 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.28727379511176 5 0.133747149502335 4 NA NA -5.76443902889295 LTS-035 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.452 1 NA 0.995717851896737 6 0.21242637940394 2 2 0 -5.76689472863964 LTS-035 chr22 16887896 20303733 3415838 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, PRODH, NA NA NA NA NA NA NA NA NA LTS-035 MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.294557731201324 162 0.0866072180244848 0.945406051180372 4498 0.284192778781143 2 2 0 -6.76547456987647 LTS-035 NA NA NA NA LTS-035 chr22 20303734 20303796 63 * DGCR6L NA 0 NA 0.886 1 NA NA NA NA NA LTS-035 chr22 20303797 20398710 94914 * c(TMEM191B, PI4KAP1, NA, DGCR6L) 0.269 1 NA 0.473378233736738 39 0.378551026800929 0 0 0 -5.78025391952036 LTS-035 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 1.083 1 NA NA NA NA NA LTS-035 chr22 20717835 22577869 1860035 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, YPEL1, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, MAPK1, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, P2RX6, SNAP29, PPM1F) 0.304647544125938 83 0.055674165415219 0.927292272131453 2481 0.275359004861344 2 2 0 -6.79579105880682 LTS-035 chr22 22577870 22599537 21668 * VPREB1 0.272 1 NA 0.884384360159716 35 0.446636104769905 2 2 0 -5.76509568654576 LTS-035 chr22 22599538 22907730 308193 * c(ZNF280A, ZNF280B, PRAME, LL22NC03-63E9.3, VPREB1, BMS1P20) 0.275894780890465 46 0.0727239768686656 1.01511070102109 403 0.633642726023942 2 2 0 -6.77439592182799 LTS-035 chr22 22907731 23063645 155915 * c(POM121L1P, LL22NC03-63E9.3, GGTLC2) 0.293 1 NA 0.866679716279944 125 0.240566354604591 1 1 0 -5.78272981573348 LTS-035 chr22 23063646 28193794 5130149 * c(DDTL, LOC100128531, MIR548J, IGLL5, SGSM1, ADORA2A, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, ZDHHC8P1, C22orf15, GRK3, DDT, SPECC1L, CABIN1, SEZ6L, TFIP11, TMEM211, GSTTP1, FBXW4P1, RGL4, GGT1, GGT5, RSPH14, GNAZ, MIF-AS1, GSTT1, POM121L9P, VPREB3, IGLL1, LRRC75B, LOC391322, CHCHD10, SRRD, MIF, MMP11, MN1, PIWIL3, MIAT, DRICH1, UPB1, SUSD2, ASPHD2, BCR, BCRP3, ADORA2A-AS1, POM121L10P, CES5AP1, GSTTP2, NA NA NA NA NA NA NA NA NA LTS-035 SMARCB1, SLC2A11, SNRPD3, TOP1P2, MIR650, ZNF70, GUCD1, TPST2, MYO18B, KIAA1671, HPS4, GUSBP11, DERL3, IGLL3P, LRP5L, RAB36) 0.321593398301097 102 0.0735077951140927 0.899302916917405 4067 0.229277446247189 2 2 0 -7.21414108662017 LTS-035 NA NA NA NA LTS-035 chr22 28193795 38259062 10065268 * c(HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, MIR4764, ZNRF3-AS1, SF3A1, CACNG2, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, IFT27, TRIOBP, CDC42EP1, CHEK2, PIK3IP1, ELFN2, C1QTNF6, EMID1, ANKRD54, SELENOM, CSF2RB, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, AP1B1, CABP7, TMPRSS6, RNF215, EWSR1, MORC2, TTC28, GCAT, PES1, SEC14L2, RBFOX2, NA NA NA NA NA NA NA NA NA LTS-035 RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, APOL2, AP1B1P1, PRR14L, BPIFC, C22orf31, C22orf24, FBXO7, RHBDD3, TXN2, GGA1, SEC14L3, INPP5J, CYTH4, TTC28-AS1, SEC14L4, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, IL2RB, SDC4P, LGALS1, LGALS2, LIF, LIMK2, MB, MCM5, MFNG, MN1, MPST, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, TUG1, CCDC157, ZMAT5, EIF4ENIF1, PDXP, PVALB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 RAC2, RFPL1, SLC5A1, SMTN, SLC5A4, GATSL3, SSTR3, TCN2, TIMP3, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, NOL12, KCTD17, FOXRED2, APOL6, APOL5, APOL4, APOL3, SYN3, TBC1D10A, KREMEN1, ZNRF3, ASCC2, GALR3, NIPSNAP1, KIAA1656, APOL1, THOC5, EIF3D, MTMR3, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.33481467727889 254 0.0691264487787553 0.785614723186531 11152 0.229429073924786 1 1 0 -6.87889194449636 LTS-035 NA NA NA NA LTS-035 chr22 38259063 38895525 636463 * c(MIR4534, DDX17, KDELR3, CSNK1E, SLC16A8, MAFF, TMEM184B, KCNJ4, LOC400927, EIF3L, POLR2F, SOX10, BAIAP2L2, PLA2G6, C22orf23, MICALL1, PICK1) 0.312801960496954 33 0.0518068966977809 0.892616794970963 1238 0.209510428886298 2 2 0 -6.87846030754663 LTS-035 chr22 38895526 38897120 1595 * DDX17 NA 0 NA 0.738 1 NA NA NA NA NA LTS-035 chr22 38897121 39069847 172727 * c(DDX17, DMC1, CBY1, FAM227A) 0.337768199434802 8 0.140223227645881 0.741003243216799 215 0.162435551294282 1 1 0 -6.77119864263621 LTS-035 chr22 39069848 39077916 8069 * CBY1 NA 0 NA 1.142 1 NA NA NA NA NA LTS-035 chr22 39077917 39216789 138873 * c(DNAL4, NPTXR, SUN2, TOMM22, GTPBP1, JOSD1) 0.28876090462149 18 0.0820207211185714 0.986337014780947 494 0.274471667891881 2 2 0 -6.73646033009182 LTS-035 chr22 39216790 39760288 543499 * c(APOBEC3A_B, TAB1, APOBEC3D, APOBEC3H, APOBEC3A, APOBEC3F, CBX6, NPTXR, CBX7, SNORD43, APOBEC3C, PDGFB, APOBEC3G, RPL3, SYNGR1, APOBEC3B) 0.353063966843783 26 0.0863368715243689 0.776522970625622 769 0.258333459448422 1 1 0 -6.75175610626763 LTS-035 chr22 39760289 39760293 5 * c(TAB1, SYNGR1) NA 0 NA 0.934 1 NA NA NA NA NA LTS-035 chr22 39760294 40030811 270518 * c(LOC100506472, TAB1, MGAT3, ATF4, MIEF1, CACNA1I, SYNGR1, RPS19BP1) 0.303316964871716 4 0.0147309198626562 1.00448737497941 539 0.20672708368655 2 2 0 -6.92416290961563 LTS-035 chr22 40030812 40036862 6051 * CACNA1I NA 0 NA 0.711 1 NA NA NA NA NA LTS-035 chr22 40036863 51171497 11134635 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, PKDREJ, SLC25A17, NUP50, TOB2, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, TNFRSF13C, CPT1B, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, WBP2NL, POLR3H, CYB5R3, TYMP, EP300, FBLN1, TNRC6B, GRAMD4, NA NA NA NA NA NA NA NA NA LTS-035 TTLL12, MLC1, ZC3H7B, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, RNU12, ATP5L2, SMC1B, CSDC2, RRP7A, MCAT, DESI1, SGSM3, MCHR1, LOC284933, PARVB, NCAPH2, LINC00634, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, SHISA8, ODF3B, NAGA, NDUFA6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 SNU13, ACO2, GTSE1, PMM1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, MKL1, RANGAP1, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, CERK, EFCAB6, SREBF2, ST13, TCF20, TEF, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, CENPM, ALG12, CRELD2, C22orf46, CCDC134, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, LDOC1L, POLDIP3, PHF5A, KIAA1644, SHANK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 TUBGCP6, CACNA1I, NA, LMF2, SMDT1, RRP7BP, SERHL, GRAP2, CELSR1, PPP6R2, ZBED4, RBX1, SCO2) 0.342706853046643 319 0.0769464391645802 0.788062452454369 12696 0.231497053921819 1 1 0 -6.81530513813349 LTS-035 NA NA NA NA LTS-035 chr22 51171498 51183804 12307 * c(ACR, SHANK3) NA 0 NA 0.788229363345688 39 0.266769558422517 1 NA NA -5.76442443376302 LTS-035 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.548 1 NA NA NA NA NA LTS-035 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.595994558195312 59 0.0929004765265828 0 NA NA -5.76536841856223 LTS-035 chrX 2699993 2700027 35 * XG 0.458 1 NA 0.733 1 NA NA NA NA NA LTS-035 chrX 2700028 11790426 9090399 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.408924404924992 54 0.0452424017117626 0.729601039551634 2729 0.172718397385435 1 1 0 -7.87893525607723 LTS-035 chrX 11790427 11790798 372 * MSL3 NA 0 NA 0.469 1 NA NA NA NA NA LTS-035 chrX 11790799 13734125 1943327 * c(GS1-600G8.3, LINC01203, MSL3, TCEANC, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, ATXN3L, RAB9A, FRMPD4) 0.37607236217932 14 0.0368143545821016 0.64488392851453 889 0.142517749076287 0 0 0 -8.26799723173201 LTS-035 chrX 13734126 13734586 461 * TRAPPC2 NA 0 NA 0.719 1 NA NA NA NA NA LTS-035 chrX 13734587 32535353 18800767 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ASB11, ASB9, ZNF645, MOSPD2, MAGEB6, DDX53, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, GK, GLRA2, GPM6B, MAGEB18, GRPR, SH3KBP1, CA5BP1, DCAF8L2, NA NA NA NA NA NA NA NA NA LTS-035 MAGEB5, MAP3K15, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, NHS, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, TRAPPC2, MAGEB17, BMX, SMS, SCARNA23, CDKL5, LOC729609, ZFX, APOO, S100G, CXorf21, KLHL15, ZRSR2, OFD1, PIR, INE2, AP1S2, REPS2, SYAP1, PCYT1B) 0.381493835767215 94 0.0981230912845673 0.723934950365334 8279 0.198711158344361 1 1 0 -7.98474823557527 LTS-035 NA NA NA NA LTS-035 chrX 32535354 32601866 66513 * DMD 0 1 NA 0.788732097124885 41 0.318838576406429 1 1 0 -5.76447027380729 LTS-035 chrX 32601867 33229659 627793 * DMD NA 0 NA 0.723946262348968 75 0.0776161680937004 1 NA NA -6.08310878114992 LTS-035 chrX 33229660 33357270 127611 * DMD NA 0 NA 0.786 1 NA NA NA NA NA LTS-035 chrX 33357271 57618870 24261600 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, LOC100132831, UXT-AS1, MIR500B, MTRNR2L10, MIR4769, MIR4536-1, HUWE1, PQBP1, ATP6AP2, SSX3, TIMM17B, RRAGB, EBP, MAGED2, PIM2, WDR45, PRAF2, KLF8, CLCN5, DGKK, FUNDC1, MAGEB16, FOXR2, PAGE3, CYBB, USP27X-AS1, FAAH2, ZXDB, FAM47A, RIBC1, USP51, CXorf38, DDX3X, SPIN3, FAM47B, NA, XAGE3, XAGE5, NUDT10, DMD, ELK1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, FTSJ1, NA NA NA NA NA NA NA NA NA LTS-035 GAGE1, GAGE2C, GAGE4, HYPM, GATA1, GAGE2E, GPR82, GPKOW, APEX2, PCSK1N, SSX6, SSX7, SSX8, SSX9, GPR34, LINC01281, CFAP47, CCDC22, MAGEH1, UBQLN2, HSD17B10, ERAS, ZNF81, ITIH6, LANCL3, MPC1L, ARAF, KCND1, SPACA5, USP27X, PAGE2B, LOC392452, CXXC1P1, GLOD5, PRICKLE3, ZNF674-AS1, MIRLET7F2, MIR188, MIR221, MIR222, MIR98, MAOA, MAOB, FTH1P18, FAM47C, UQCRBP1, NDP, SPIN2B, SPANXN5, TBC1D25, OTC, FOXP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CDK16, CFP, PFKFB1, PLP2, GPR173, SPIN2A, NDUFB11, GNL3L, BCOR, FAM120C, LINC01420, NUDT11, OTUD5, KRBOX4, PRRG1, CHST7, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, MID1IP1, RBM3, NYX, RP2, RPGR, DUSP21, TSPYL2, ZNF674, NA, GAGE2B, GAGE13, NA, WDR13, PORCN, WNK3, XAGE1B, SSX1, SSX5, SNORA11, SUV39H1, SYN1, SYP, MIR532, DYNLT3, TFE3, TIMP1, TSPAN7, TRO, MIR660, LINC01545, FAM156B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, KDM6A, WAS, XK, ZNF182, ZNF41, ZNF157, CACNA1F, CXorf36, MAGIX, EFHC2, PPP1R2P9, MAGED4B, USP11, USP9X, RBM10, KDM5C, SMC1A, TMEM47, SRPX, UXT, SLC9A7, CCNB3, INE1, CASK, PAGE1, AKAP4, PPP1R3F, CCDC120, TSR2, FAM104B, PAGE5, RGN, BMP15, SLC38A5, MED14, SYTL5, MAGED1, PAGE4, JADE3) 0.318050089141646 96 0.0914241410928285 0.84244373696801 13159 0.196128642570521 1 1 0 -8.62639305074759 LTS-035 NA NA NA NA LTS-035 chrX 57618871 57937169 318299 * c(ZXDB, ZXDA) NA 0 NA 0.793765460574773 199 0.208958925986919 1 NA NA -5.76594555471182 LTS-035 chrX 61999880 63444792 1444913 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, MTMR8, LINC01278) 0.242 1 NA 0.976362041201354 407 0.22878119860087 2 2 0 -5.76462827573864 LTS-035 chrX 63444793 71525526 8080734 * c(MIR676, VSIG4, OTUD6A, ASB12, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, CXCR3, YIPF6, SNX12, RGAG4, NHSL2, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, FLJ44635, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, CITED1, MSN, NONO, OPHN1, P2RY4, PDZD11, PIN4, NLGN3, ERCC6L, GDPD2, MTMR8, ZC4H2, TEX11, EDA2R, BCYRN1, RPS4X, PJA1, TAF1, LAS1L, FRMD8P1, OGT, SLC7A3, NA NA NA NA NA NA NA NA NA LTS-035 ZMYM3, ACRC, STARD8, HEPH, MED12) 0.293934761297774 40 0.104083792674152 0.935488783781288 4813 0.226264274142476 2 2 0 -6.93029418420171 LTS-035 NA NA NA NA LTS-035 chrX 71525527 71549374 23848 * c(CITED1, HDAC8) NA 0 NA 0.836 1 NA NA NA NA NA LTS-035 chrX 71549375 101609367 30059993 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, DACH2, COX7B, MAP2K4P1, APOOL, HDX, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DRP2, ZCCHC5, ABCB7, CENPI, BRWD3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, LPAR4, TTC3P1, FAM133A, RPA4, HNRNPH2, PABPC1L2A, KIAA2022, BEX5, SATL1, ZCCHC13, ARL13A, XKRX, PGAM4, XRCC6P5, NA NA NA NA NA NA NA NA NA LTS-035 MIR374A, NAP1L2, NAP1L3, MIR384, TBX22, RLIM, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, CPXCR1, CHIC1, ATP7A, TAF7L, ARMCX6, POU3F4, ATRX, JPX, HDAC8, NXF5, KLHL4, PCDH19, MAGEE1, TMEM35A, RPL36A, TNMD, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, FGF16, TGIF2LX, TSIX, SYTL4, ITM2A, ARMCX2) 0.324915778514452 78 0.110299435784892 0.838148132549385 8005 0.579895787188628 1 1 0 -7.0985787906155 LTS-035 NA NA NA NA LTS-035 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.354 1 NA NA NA NA NA LTS-035 chrX 101615285 101768664 153380 * TMSB15A NA 0 NA 0.331408787713229 40 0.382835051847499 0 NA NA -5.95280989233038 LTS-035 chrX 101768665 103231682 1463018 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, GPRASP2, RAB40A, TMEM31, BEX3, RAB40AL, TMSB15B, TCEAL5, MORF4L2-AS1, GLRA4, TCEAL9, RAB9B, PLP1, BEX1, NXF4, NXF3, BEX4, TCEAL7, ARMCX5, TCEAL4, BHLHB9, BEX2, TCEAL3, TCEAL8, TCEAL1, MORF4L2, GPRASP1) 0.291883698277463 6 0.144013425300097 0.846606472481713 1113 0.241895832085058 1 1 0 -6.99951822395996 LTS-035 chrX 103231683 103267167 35485 * H2BFWT NA 0 NA 1.11 1 NA NA NA NA NA LTS-035 chrX 103267168 103316720 49553 * c(H2BFWT, H2BFM) 0.26010565044724 2 0.00424264068711929 1.34751055792338 51 0.314022535721843 18 14 4 -7.10615707999131 LTS-035 chrX 103316721 103343822 27102 * character(0) NA 0 NA 0.862 1 NA NA NA NA NA LTS-035 chrX 103343823 154299981 50956159 * c(ZBTB33, FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, TEX13C, FGF13-AS1, PRR32, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR718, MIR764, MIR2114, TRPC5OS, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MIR4329, MAMLD1, LINC00629, MAGEA10-MAGEA5, MIR3978, HS6ST2-AS1, BCAP31, NA NA NA NA NA NA NA NA NA LTS-035 MAGEA8-AS1, TENM1, CDR1, SLC9A6, ENOX2, CETN2, STAG2, PLAC1, UTP14A, ZNF275, PGRMC1, MID2, TREX2, SLC6A14, PNMA5, ATG4A, CNGA2, COL4A5, COL4A6, SLITRK4, SPANXN3, MAGEC3, PASD1, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ADGRG4, GAB3, PNCK, ZFP92, ACTRT1, GPR119, RBMXL3, DOCK11, TEX28, AMOT, CSAG1, FMR1NB, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, DCX, ZCCHC12, NA, NA, DKC1, DNASE1L1, TSC22D3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 DUSP9, AGTR2, ELF4, EMD, CT83, SLC25A43, NRK, INTS6L, ZNF449, VMA21, ABCD1, F8, F9, ACSL4, GPC4, FGF13, FHL1, SEPT6, FLNA, FMR1, AFF2, ATP1B4, KCNE5, LDOC1, G6PD, CT47A11, GABRA3, GABRE, FAM127B, IL1RAPL2, OPN1MW, SRPK3, GDI1, SNORA70, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, GLUD2, ATP11C, LINC00632, LOC286437, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, PNMA3, HCFC1, CTAG2, HMGB3, HPRT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 XIAP, HTR2C, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, IDH3G, IDS, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IL13RA2, IRAK1, L1CAM, LOC389895, UBE2NL, LAMP2, ARHGAP4, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR105-1, MIR105-2, MIR106A, MIR19B2, MIR92A2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MCF2, MECP2, MPP1, FAM127C, CT45A3, CT45A5, SPANXN4, MTCP1, MTM1, NDUFA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 ATP2B3, SPANXN1, SPANXN2, MIR424, OCRL, PAK3, NSDHL, ZDHHC9, LUZP4, TFDP3, MAGEC2, VGLL1, RBMX2, STK26, PLS3, PLXNB3, ATP6AP1, CT45A6, CT45A1, CXorf40B, SASH3, WDR44, NUP62CL, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, AVPR2, MIR448, MIR450A1, SAGE1, PLXNA3, HAUS7, ZNF280C, MBNL3, GABRQ, NXT2, NKRF, TEX13B, TEX13A, MOSPD1, PRPS1, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR452, MIR450A2, MIR503, MIR504, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, KIAA1210, RGAG1, PDZD4, LRCH2, RAP2C, OPN1LW, RENBP, FAM3A, RPL10, RPL39, SPANXA2-OT1, BCORL1, BGN, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, SPANXC, UPF3B, CT47A7, SLC6A8, SMARCA1, FUNDC2, MIR542, SOX3, SRD5A1P1, SSR4, SNORA35, SNORA36A, SNORA56, BRS3, TAZ, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR767, MIR766, RNF113A, ZNF185, PRRG3, BRCC3, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, ESX1, NAA10, UBL4A, TMEM187, CAPN6, LAGE3, SLC10A3, TKTL1, GPR101, CD99L2, USP26, TMEM164, PHF6, CUL4B, TMEM185A, SLITRK2, IRS4, MIR503HG, IKBKG, MTMR1, APLN, FAM127A, FATE1, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, FAM50A, AIFM1, TMEM257, CHRDL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-035 CXorf40A, FAM58A, RIPPLY1, GPR50, MMGT1, RAB33A, ARHGEF6, CD40LG, MAGEC1, AMMECR1) 0.336773267553471 240 0.0891885767994995 0.829323454906015 23532 0.278878261967847 1 1 0 -8.04918483235384 LTS-035 NA NA NA NA LTS-035 chrX 154299982 154774986 475005 * c(RAB39B, CLIC2, TMLHE, VBP1, BRCC3) NA 0 NA 0.788597159484839 325 0.202408336539913 1 NA NA -5.76544641736376 LTS-035 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.154514819481046 25 0.13504194410133 0 NA NA -13.6961699368496 LTS-035 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.890406042110738 19 0.509517418740518 2 NA NA -5.92631142512779 LTS-035 chr1 65893 783071 717179 * c(LOC100288069, LINC01128, LOC729737, OR4F5, LINC00115) 0 1 NA 0.904525461597955 41 0.293898663471347 3 3 0 -5.79172687126916 LTS-036 chr1 783072 1597041 813970 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.417222067264289 70 0.0791341864284819 0.82786287264458 2978 0.206850218797361 2 1 1 -7.06196748150604 LTS-036 chr1 1597042 1597108 67 * c(SLC35E2B, CDK11B) NA 0 NA 0.403 1 NA NA NA NA NA LTS-036 chr1 1597109 1639048 41940 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.3986882287341 5 0.167482237864199 0.658651821835361 110 0.259448450882935 2 1 1 -6.73977756552316 LTS-036 chr1 1639049 1646772 7724 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.321977575411849 39 0.226196220336386 1 NA NA -5.77569825388344 LTS-036 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.867 1 NA NA NA NA NA LTS-036 chr1 1647807 1659653 11847 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.414526757809307 12 0.066344600839903 0.877483560603408 64 0.465943959945318 2 1 1 -6.85236842794497 LTS-036 chr1 1659654 1659669 16 * c(SLC35E2B, SLC35E2) NA 0 NA 0.444 1 NA NA NA NA NA LTS-036 chr1 1659670 1663985 4316 * c(SLC35E2B, SLC35E2) 0.424535848729521 3 0.0829477747340659 0.557597964950683 54 0.134792525044331 2 1 1 -6.87648882585832 LTS-036 chr1 1663986 1666125 2140 * c(SLC35E2B, SLC35E2) NA 0 NA 1.386 1 NA NA NA NA NA LTS-036 chr1 1666126 7796549 6130424 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-036 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.405626196800231 126 0.0875434799907388 0.855808787705904 5322 0.272059441617681 3 2 1 -7.68156421414098 LTS-036 NA NA NA NA LTS-036 chr1 7796550 7796892 343 * CAMTA1 NA 0 NA 0.661 1 NA NA NA NA NA LTS-036 chr1 7796893 7838263 41371 * c(CAMTA1, VAMP3) 0.382805838993542 6 0.0361312422519164 0.810784767879116 118 0.157795899114008 2 1 1 -6.75013741243027 LTS-036 chr1 7838264 7880683 42420 * c(PER3, VAMP3) 0.362 1 NA 0.805544979884998 135 0.206226790207885 2 2 0 -5.77264345317096 LTS-036 chr1 7880684 11714368 3833685 * c(ENO1-AS1, APITD1-CORT, MTOR-AS1, ANGPTL7, UBE4B, MASP2, UTS2, PARK7, RBP7, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, UBIAD1, TNFRSF9, CENPS, MIR34A, RERE, SLC45A1, PEX14, PGD, PIK3CD, EXOSC10, ERRFI1, CASZ1, CTNNBIP1, DISP3, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, H6PD) 0.32062311261885 86 0.170824677524755 0.81887439453961 4339 0.214263661766053 2 1 1 -7.60120709861539 LTS-036 chr1 11714369 11781134 66766 * c(MAD2L2, FBXO2, FBXO6, DRAXIN, FBXO44) 0.006 1 NA 0.777637929360467 233 0.160003306606168 2 2 0 -5.77494291755041 LTS-036 chr1 11781135 11835455 54321 * AGTRAP 0.0665790290360351 12 0.138525350486013 0.882781660548971 200 0.363543081712892 4 4 0 -6.76935938216452 LTS-036 chr1 11835456 11836450 995 * character(0) 0.363 1 NA 0.723124281757464 9 0.151128624393631 2 2 0 -5.76441246004401 LTS-036 chr1 11836451 12838099 1001649 * c(NPPA-AS1, MIR4632, CLCN6, AADACL3, AADACL4, PRAMEF12, MTHFR, NPPA, NPPB, PLOD1, VPS13D, MIIP, SNORA59B, TNFRSF1B, KIAA2013, DHRS3, C1orf158, TNFRSF8, MFN2) 0.374740566705818 44 0.0985705309774023 0.814483648529183 1811 0.173124710038784 2 1 1 -7.0529403172963 LTS-036 chr1 12838100 12853262 15163 * PRAMEF1 NA 0 NA 1.102 1 NA NA NA NA NA LTS-036 chr1 12853263 13183561 330299 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF11, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22) 0.357862226810084 13 0.0867674463355338 1.22665678291716 82 0.268302012457208 4 2 2 -6.79042444161896 LTS-036 chr1 13183562 13183601 40 * HNRNPCL2 NA 0 NA 0.868 1 NA NA NA NA NA LTS-036 chr1 13183602 16802550 3618949 * c(PDPN, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, LRRC38, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, PRAMEF9, FAM131C, SPATA21, TMEM82, PRAMEF17, PRAMEF13, NA, HNRNPCL2, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NECAP2, RSC1A1, CELA2A, PRAMEF19, PRAMEF20, NA, FLJ37453, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, CASP9, DDI2) 0.371150306317185 70 0.124245490147313 0.851716198554809 3265 4.99239706822451 2 1 1 -6.74288730747812 LTS-036 chr1 16802551 16802964 414 * CROCCP3 NA 0 NA 0.486 1 NA NA NA NA NA LTS-036 chr1 16802965 17010619 207655 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.374672006483701 20 0.0800035525527 0.647825489387925 166 0.153628428042743 2 1 1 -6.79553152433311 LTS-036 chr1 17010620 17010632 13 * character(0) NA 0 NA 0.833 1 NA NA NA NA NA LTS-036 chr1 17010633 19166294 2155662 * c(MST1L, PADI2, KLHDC7A, ATP13A2, PADI4, ESPNP, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, CROCC) 0.325430586999937 84 0.105492180348804 0.884449241578109 1873 0.259684794176547 3 2 1 -6.94668329527148 LTS-036 chr1 19166295 19181393 15099 * TAS1R2 0.003 1 NA 0.784693585065405 45 0.169088306974656 2 2 0 -5.76704135457709 LTS-036 chr1 19181394 19568972 387579 * c(MIR4695, IFFO2, EMC1, UBR4, TAS1R2, ALDH4A1) 0.0143938511980099 18 0.0853005451713877 0.852960157351054 1042 0.309730717126013 3 3 0 -7.38896547443393 LTS-036 chr1 19568973 19578192 9220 * c(EMC1, MRTO4) 0.442 1 NA 0.811808659107131 27 0.123862010805564 2 2 0 -5.77004919578058 LTS-036 chr1 19578193 24022437 4444245 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, MINOS1-NBL1, MIR4684, CELA3A, HNRNPR, VWA5B1, UBXN10, ZNF436-AS1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, OTUD3, CELA3B, AKR7L, ALPL, TMCO4, MDS2, PLA2G2D, LINC00339, PLA2G2E, HSPG2, HTR1D, HTR6, LINC01141, ID3, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, KIF17, RAP1GAP, RPL11, NA NA NA NA NA NA NA NA NA LTS-036 RPS14P3, PLA2G2F, PINK1, TCEA3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, EIF4G3, CDA, ZBTB40, CDC42) 0.316423479474823 134 0.165017282296135 0.84145719747977 5476 0.219784487874978 3 2 1 -7.76019728507023 LTS-036 NA NA NA NA LTS-036 chr1 24022438 24069637 47200 * RPL11 0 1 NA 0.716586577616971 14 0.100975598183776 2 2 0 -5.76441048428809 LTS-036 chr1 24069638 24201643 132006 * c(TCEB3-AS1, LYPLA2, CNR2, FUCA1, GALE, HMGCL, PITHD1, TCEB3) 0.000665892637832182 19 0.00275298880644674 0.87247303358132 509 0.304216709991408 20 20 0 -16.0441597423657 LTS-036 chr1 24201644 24288404 86761 * c(MIR378F, CNR2, PNRC2) 0.476 1 NA 0.865941572562161 31 0.225518871250994 3 3 0 -5.77858289330371 LTS-036 chr1 24288405 25599056 1310652 * c(RCAN3AS, SRRM1, RCAN3, MYOM3, IFNLR1, CLIC4, SYF2, LOC284632, NCMAP, PNRC2, RSRP1, NIPAL3, GRHL3, IL22RA1, RHD, RUNX3, STPG1) 0.347535573666158 50 0.139326514170923 0.826604899964375 1557 0.238828023354855 2 1 1 -7.04579490904612 LTS-036 chr1 25599057 25599066 10 * c(RSRP1, RHD) NA 0 NA 0.484 1 NA NA NA NA NA LTS-036 chr1 25599067 25656954 57888 * c(RSRP1, RHD) NA 0 NA 0.060894346644713 77 0.066431718885592 0 NA NA -10.4247238576032 LTS-036 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.908 1 NA NA NA NA NA LTS-036 chr1 25666924 27876482 2209559 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, EXTL1, WDTC1, TMEM50A, ZNF683, LDLRAP1, AHDC1, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, ACTG1P20, LOC646471, CEP85, SLC9A1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, TRIM63, SYTL1, NA NA NA NA NA NA NA NA NA LTS-036 FCN3, MAP3K6, UBXN11) 0.336245097692136 78 0.143704281122451 0.823311501321524 3819 0.200083180088009 2 1 1 -7.38221653156192 LTS-036 NA NA NA NA LTS-036 chr1 27876483 28087450 210968 * c(FAM76A, FGR, IFI6, AHDC1) 0 1 NA 0.784946294059067 218 0.136705960970744 2 2 0 -5.82055214229641 LTS-036 chr1 28087451 29045325 957875 * c(GMEB1, RCC1, RAB42, FAM76A, EYA3, DNAJC8, STX12, RNU11, SMPDL3B, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1, THEMIS2) 0.136681547032451 10 0.187111642253139 0.791488769680286 1491 0.204216857510911 2 2 0 -6.86773342486849 LTS-036 chr1 29045326 29063236 17911 * YTHDF2 0.422 1 NA 0.716725586636458 17 0.276787267005675 2 2 0 -5.76441017689232 LTS-036 chr1 29063237 32952330 3889094 * c(FAM229A, MATN1-AS1, MIR4254, MIR4420, PTPRU, KHDRBS1, COL16A1, DCDC2B, LINC01225, TXLNA, EPB41, FABP3, KPNA6, LINC01226, HCRTR1, HDAC1, MTMR9LP, SERINC2, LCK, TMEM200B, MATN1, OPRD1, MECR, YTHDF2, ZCCHC17, BSDC1, TMEM39B, PEF1, IQCC, TMEM234, ADGRB2, TINAGL1, SRSF4, MARCKSL1, ZBTB8A, SNORD103C, SNORD103A, ZBTB8B, LAPTM5, CCDC28B, NKAIN1, PTP4A2, TSSK3, FAM167B, EIF3I, SPOCD1, SNRNP40, SDC3, PUM1) 0.386805386963403 58 0.126763658458835 0.827277754984532 3488 0.204286668000687 2 1 1 -7.71343110736639 LTS-036 chr1 32952331 33502343 550013 * c(TMEM54, RNF19B, AK2, FNDC5, HPCA, ZBTB8OS, KIAA1522, RBBP4, S100PBP, ZBTB8A, ZBTB8B, SYNC, YARS) 0.339720426658785 26 0.152261697794897 0.9623617522365 929 0.234124776660567 3 2 1 -6.73823364595606 LTS-036 chr1 33502344 33502443 100 * AK2 NA 0 NA 1.174 1 NA NA NA NA NA LTS-036 chr1 33502444 35484801 1982358 * c(MIR3605, TMEM35B, SMIM12, AZIN2, CSMD2, GJB4, HMGB4, A3GALT2, ZNF362, PHC2, AK2, GJA4, GJB3, GJB5, CSMD2-AS1, TRIM62, DLGAP3, LOC653160, ZSCAN20, C1orf94, ZMYM6) 0.373383314341561 41 0.11579260791942 1.19995769819411 1579 0.27696380213875 4 2 2 -6.74968069467357 LTS-036 chr1 35484802 35484905 104 * ZMYM6 NA 0 NA 0.909 1 NA NA NA NA NA LTS-036 chr1 35484906 36107347 622442 * c(NCDN, TFAP2E, PSMB2, SFPQ, ZMYM1, KIAA0319L, ZMYM4, ZMYM6) 0.246039663536383 2 0.284964032818179 1.10054638476521 786 0.27279851465724 4 3 1 -6.81065576074891 LTS-036 chr1 36107348 36937059 829712 * c(OSCP1, C1orf216, COL8A2, CSF3R, AGO3, AGO4, AGO1, TRAPPC3, TEKT2, ADPRHL2, EVA1B, MAP7D1, PSMB2, CLSPN, MRPS15, SH3D21, STK40, LSM10, THRAP3) 0.310474044649827 33 0.161137222718572 0.793539755106416 1596 0.177133162116108 2 1 1 -7.01988796409672 LTS-036 chr1 36937060 37959441 1022382 * c(MIR4255, CSF3R, GRIK3, MEAF6, LINC01137, ZC3H12A) 0.005 1 NA 0.848597513591651 349 0.176684855104369 3 3 0 -6.11727523988886 LTS-036 chr1 37959442 38512361 552920 * c(MIR5581, SF3A3, C1orf122, MANEAL, FHL3, RSPO1, EPHA10, GNL2, INPP5B, MTF1, UTP11, POU3F1, C1orf109, CDCA8, MEAF6, DNALI1, YRDC, SNIP1) 0.0196498179970628 10 0.130031150114117 0.823523573545695 1355 0.200558383932045 3 3 0 -7.2066523928283 LTS-036 chr1 38512362 38554938 42577 * c(MIR3659, POU3F1) NA 0 NA 1.02 1 NA NA NA NA NA LTS-036 chr1 38554939 39456998 902060 * c(MIR3659, GJA9-MYCBP, MYCBP, LINC01343, RHBDL2, RRAGC, AKIRIN1) 0.222897470575506 10 0.158938877140449 0.994765265034361 278 0.220465779216933 3 3 0 -7.04985105433347 LTS-036 chr1 39456999 39471706 14708 * AKIRIN1 0.384 1 NA 1.01588672282197 54 0.176200081025688 3 3 0 -5.76490880034157 LTS-036 chr1 39471707 39670412 198706 * c(MACF1, NDUFS5, AKIRIN1) 0.327 1 NA 0.962643787933967 43 0.194752937163413 3 3 0 -5.76485864280888 LTS-036 chr1 39670413 39823558 153146 * MACF1 0.408593570182319 7 0.0561112839852751 0.777333254358073 394 0.142679153185743 2 1 1 -6.86889360389562 LTS-036 chr1 39823559 39824320 762 * MACF1 NA 0 NA 1.149 1 NA NA NA NA NA LTS-036 chr1 39824321 39929240 104920 * c(MACF1, KIAA0754) 0.414341127133192 8 0.0346203903584496 1.11722735698875 422 0.194787519674146 4 2 2 -7.15634604600202 LTS-036 chr1 39929241 39991588 62348 * c(MACF1, BMP8A, PPIEL) 0.003 1 NA 1.20517495557118 126 0.490734712155443 4 4 0 -5.76448592287722 LTS-036 chr1 39991589 40539448 547860 * c(PPIE, CAP1, HEYL, BMP8A, MYCL, HPCAL4, TRIT1, PPT1, OXCT2, BMP8B, SNORA55, PPIEL, NT5C1A, MFSD2A, PABPC4) 0.149930323643562 20 0.203707032925125 1.16400829128479 880 0.312389432958245 4 4 0 -6.80684578837162 LTS-036 chr1 40539449 40737589 198141 * c(ZMPSTE24, TMCO2, PPT1, RLF) 0.445 1 NA 1.11524112042419 273 0.295498814817056 4 4 0 -5.77789746141817 LTS-036 chr1 40737590 42744376 2006787 * c(NFYC-AS1, SLFNL1-AS1, ZMPSTE24, ZNF684, COL9A2, CTPS1, CITED4, EDN2, SLFNL1, FOXJ3, SCMH1, GUCA2A, GUCA2B, ZFP69, MIR30C1, MIR30E, NFYC, HIVEP3, SMAP2, EXO5, ZFP69B, KCNQ4, RIMS3) 0.332967296458781 48 0.158072919478133 1.15576417682689 1776 0.269166446217898 4 3 1 -6.84399779904445 LTS-036 chr1 42744377 42776654 32278 * FOXJ3 NA 0 NA 1.348 1 NA NA NA NA NA LTS-036 chr1 42776655 43315436 538782 * c(LOC100129924, PPIH, ERMAP, CLDN19, FOXJ3, RIMKLA, SVBP, YBX1, ZNF691, P3H1, CCDC30, C1orf50, PPCS, ZMYND12) 0.329997570420795 11 0.0373316828639501 1.34412610325303 732 0.30562672824311 6 4 2 -7.02471524086508 LTS-036 chr1 43315437 43316295 859 * ZNF691 NA 0 NA 0.979 1 NA NA NA NA NA LTS-036 chr1 43316296 49227126 5910831 * c(EFCAB14-AS1, KDM4A-AS1, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, LRRC41, EBNA1BP2, KIF2C, MED8, TOE1, PLK3, CCDC163, DMBX1, KLF17, TMEM125, KNCN, MOB3C, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, DPH2, CYP4Z1, SLC5A9, FAAH, FOXE3, FOXD2, MAST2, SZT2, MMACHC, CYP4X1, BEST4, SNORD55, CYP4A22, C1orf228, TCTEX1D4, IPP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, NA NA NA NA NA NA NA NA NA LTS-036 MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, PRDX1, ZNF691, TMEM69, CMPK1, ATP6V0B, LURAP1, SPATA6, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, GPBP1L1, RPS8, ATPAF1, ELOVL1, ST3GAL3, STIL, SLC2A1, SLC6A9, TAL1, TIE1, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, TMEM53, HECTD3, BEND5, HYI, RAD54L, FOXD2-AS1, HPDL, AGBL4, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, EFCAB14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 CDC20) 0.332837829769293 136 0.157094218429745 1.20204048031701 7225 0.269016522957331 4 3 1 -6.80679685646865 LTS-036 NA NA NA NA LTS-036 chr1 49227127 49242346 15220 * c(BEND5, AGBL4) NA 0 NA 0.802 1 NA NA NA NA NA LTS-036 chr1 49242347 52927246 3684900 * c(MIR761, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, CC2D1B, EPS15, TTC39A, ZCCHC11, RNF11, C1orf185, NRDC, ORC1, TXNDC12, RAB3B, DMRTA2, BEND5, AGBL4, PRPF38A, BTF3L4, ZFYVE9) 0.29392108269895 39 0.197707410010372 1.00406933214507 2340 0.253665948037176 3 2 1 -6.81660428663139 LTS-036 chr1 52927247 53553778 626532 * c(PODN, ZCCHC11, GPX7, FAM159A, ZYG11A, ECHDC2, SCP2, SLC1A7, COA7, ZYG11B) 0.379563850561731 16 0.144378538917666 1.13971747265196 878 0.313440181928579 4 2 2 -6.75697300928456 LTS-036 chr1 53553779 55148441 1594663 * c(LOC100507564, MROH7-TTC4, MIR4781, LRRC42, TCEANC2, CPT2, GLIS1, SLC25A3P1, DIO1, CDCP2, SSBP3, ACOT11, FAM151A, MROH7, LDLRAD1, MAGOH, MRPL37, HSPB11, YIPF1, C1orf123, NDC1, CYB5RL, DMRTB1, SLC1A7, LRP8, TMEM59) 0.309299262209387 34 0.135863072649649 1.33876584329123 1599 0.305106832352642 4 3 1 -6.81500080369147 LTS-036 chr1 55148442 55151979 3538 * c(MROH7-TTC4, MROH7) NA 0 NA 0.86 1 NA NA NA NA NA LTS-036 chr1 55151980 55245639 93660 * c(MROH7-TTC4, PARS2, MROH7, TTC4) 0.366905722239597 10 0.184029858688445 0.826123682323264 253 0.205274125326697 2 1 1 -6.76570339107267 LTS-036 chr1 55245640 55250823 5184 * TTC22 0.39 1 NA 0.868554463863089 49 0.23185206512352 3 3 0 -5.76517244029571 LTS-036 chr1 55250824 65157552 9906729 * c(LINC01135, LOC100507634, MIR4422, MIR4794, MIR4711, PATJ, MYSM1, OMA1, C1orf87, UBE2U, CYP2J2, DAB1, LEXM, KANK4, DHCR24, LINC00466, C1orf168, TMEM61, USP24, ITGB3BP, PCSK9, FOXD3, ANGPTL3, ALG6, JUN, TACSTD2, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, TTC22, FGGY, PRKAA2, CACHD1, HSD52, C8A, C8B, USP1, BSND, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7, PLPP3) 0.354901508524431 102 0.134326461042805 0.848468112979413 4276 0.217374553994038 3 2 1 -8.49793499779615 LTS-036 chr1 65157553 91182633 26025081 * c(ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, MIR3671, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, GBP4, GBP5, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, IL23R, GBP6, GADD45A, TCTEX1D1, SLC44A5, AK4, CLCA4, USP33, SLC35D1, ADGRL2, LRRC8B, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, NA NA NA NA NA NA NA NA NA LTS-036 ZZZ3, SERBP1, AK5, GBP1, GBP2, GBP3, SNORD45B, SNORD45A, GNG5, ZNF326, GTF2B, LINC01140, ACADM, BARHL2, CYR61, IL12RB2, JAK1, MIGA1, GBP7, UOX, LEPR, C1orf141, GBP1P1, FLJ27354, MIR101-1, MIR186, LHX8, LINC01555, MSH4, GEMIN8P4, RBMXL1, TNNI3K, SH3GLB1, PDE4B, PIN1P1, ZNHIT6, LEPROT, GIPC2, LRRC8D, RAVER2, MCOLN3, LRRC40, DEPDC1, PRKACB, PKN2, GNG12, KYAT3, PTGER3, PTGFR, ODF2L, LRRC7, CACHD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 MIER1, DNASE2B, RABGGTB, RPE65, ADGRL4, LOC646626, SNORD45C, LOC729930, TTLL7, WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, LRRC8C, SGIP1, LMO4, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, ZRANB2, CLCA3P, CLCA2, HS2ST1, DNAJC6) 0.356597787702526 222 0.134499233764545 0.80523736491488 11610 0.222544390715596 2 1 1 -9.43345954873408 LTS-036 NA NA NA NA LTS-036 chr1 91182634 92100744 918111 * c(HFM1, BARHL2, CDC7, ZNF644) 0.337378363498153 3 0.044034077712608 0.961033339160683 397 0.222025456417633 3 2 1 -6.80612414988414 LTS-036 chr1 92100745 94016849 1916105 * c(CCDC18-AS1, GLMN, DR1, MTF2, KIAA1107, EPHX4, GFI1, SNORA66, BTBD8, CCDC18, C1orf146, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BRDT, TGFBR3, EVI5, RPAP2) 0.313997677473851 34 0.140756692643953 0.776719557359283 1588 0.190062795996897 2 1 1 -7.08273290894023 LTS-036 chr1 94016850 94334724 317875 * c(MIR760, LOC100129046, FNBP1L, BCAR3) 0 1 NA 0.773431668732616 183 0.157961286870812 2 2 0 -5.80903561038541 LTS-036 chr1 94334725 95305440 970716 * c(SLC44A3, F3, ABCA4, GCLM, DNTTIP2, ABCD3, ARHGAP29) 0.110452072549174 17 0.193170623299409 0.850983606309602 870 0.241489601614758 3 3 0 -6.91077599025463 LTS-036 chr1 95305441 95330372 24932 * SLC44A3 0.43 1 NA 0.817022845644104 21 0.171858801401172 2 2 0 -5.77315828027584 LTS-036 chr1 95330373 115829313 20498941 * c(LINC01349, LOC100129138, LINC01160, LOC100129620, AP4B1-AS1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, SLC44A3, ATXN7L2, C1orf194, LRRC39, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, NA NA NA NA NA NA NA NA NA LTS-036 S1PR1, CELSR2, ALG14, HIPK1, EXTL2, NTNG1, WDR47, CLCC1, SLC35A3, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, PPM1J, MYBPHL, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, NGF, NRAS, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 OVGP1, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, PALMD, ST7L, PRPF38B, PRMT6, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, AMIGO1, KIAA1324, PTBP2, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, MIR553, TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, DENND2D, SIKE1, CAPZA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 GPR61, PROK1, PSRC1, STRIP1, CDC14A, RTCA, SLC16A4, DNAJA1P5, CD53, LRIG2, PLPPR4) 0.360601429101688 219 0.137517531186708 0.801619254951512 11978 0.235538846511453 2 1 1 -8.73205674895205 LTS-036 NA NA NA NA LTS-036 chr1 115829314 115829528 215 * NGF NA 0 NA 0.794529404498741 5 0.0804779472899253 2 NA NA -5.76462293057902 LTS-036 chr1 115829529 116109332 279804 * NGF NA 0 NA 1.163 1 NA NA NA NA NA LTS-036 chr1 116109333 116380029 270697 * c(NHLH2, VANGL1, CASQ2) 0 1 NA 1.27086564474814 295 0.224823181736749 4 4 0 -5.76749353898145 LTS-036 chr1 116380030 116612364 232335 * c(NHLH2, SLC22A15) 0.000351036839872453 4 0.00320156211871642 1.18336079929151 268 0.362575199175699 20 20 0 -15.0985204301741 LTS-036 chr1 116612365 117102649 490285 * c(MAB21L3, ATP1A1, SLC22A15, ATP1A1-AS1, CD58) 0.166651611950565 5 0.227903049562747 0.814862454827368 297 0.186444310852413 2 2 0 -6.87715298573219 LTS-036 chr1 117102650 117122130 19481 * c(IGSF3, CD58) 0.422 1 NA 0.806084410687925 81 0.0958687197147906 2 2 0 -5.7820784880369 LTS-036 chr1 117122131 118170357 1048227 * c(MIR942, MIR320B1, MAN1A2, IGSF3, FAM46C, PTGFRN, VTCN1, TRIM45, TTF2, CD2, CD101) 0.370952400674335 47 0.0842394663835025 0.849689477199745 1075 0.433094191783154 3 2 1 -6.82338166605893 LTS-036 chr1 118170358 118420785 250428 * c(GDAP2, FAM46C) NA 0 NA 0.674959346519521 93 0.0948892220928078 2 NA NA -5.82289891952884 LTS-036 chr1 118420786 118424335 3550 * GDAP2 NA 0 NA 1.433 1 NA NA NA NA NA LTS-036 chr1 118424336 118727881 303546 * c(WDR3, SPAG17, GDAP2) 0.332724049862759 9 0.13556456026558 0.93643955338623 446 0.190108826701503 3 2 1 -6.75379338396717 LTS-036 chr1 119425646 121116733 1691088 * c(SRGAP2D, WARS2, ADAM30, HSD3BP4, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, HIST2H2BA, NBPF7, NOTCH2, HAO2, LINC00622, FAM72B, TBX15, REG4, ZNF697) 0.378752634410349 44 0.116850121290763 1.13562721425483 1249 0.50911649988236 4 2 2 -6.7605512038472 LTS-036 chr1 121116734 121313547 196814 * c(SRGAP2D, EMBP1) NA 0 NA 1.00856472518335 59 0.274240478156911 3 NA NA -5.76629519933624 LTS-036 chr1 143912360 144013853 101494 * FAM72D 0.241 1 NA 1.10193188640469 5 0.440774658981208 4 4 0 -5.76831473288415 LTS-036 chr1 144013854 145075978 1062125 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.382230363622372 57 0.0778882143513195 1.17855302254514 535 0.281079847719233 4 2 2 -6.74956773711301 LTS-036 chr1 145075979 145076044 66 * c(NBPF20, PDE4DIP) NA 0 NA 1.343 1 NA NA NA NA NA LTS-036 chr1 145076045 145136349 60305 * c(NBPF20, SEC22B, PDE4DIP) 0.349709433965622 8 0.0921767517947371 1.39207189466212 36 0.504402340037118 6 4 2 -6.74451871194866 LTS-036 chr1 145136350 145138277 1928 * NBPF20 0.248 1 NA 1.4364368545123 33 0.420773174517981 5 5 0 -5.76441887826001 LTS-036 chr1 145138278 152192825 7054548 * c(LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, RIIAD1, THEM5, NBPF15, ANKRD34A, TMOD4, CERS2, NA NA NA NA NA NA NA NA NA LTS-036 HIST2H2AB, HIST2H2BC, LINGO4, NOTCH2NL, LINC01138, LOC388692, LYSMD1, HRNR, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, NA, NA, NA, NA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.179109212011403 130 0.110530502620502 1.32869380723872 7859 0.331352033379866 4 4 0 -7.36256585636681 LTS-036 NA NA NA NA LTS-036 chr1 152192826 152195579 2754 * HRNR 0.004 1 NA 1.26093149248408 19 0.211020771683432 4 4 0 -5.76442999268606 LTS-036 chr1 152195580 152692948 497369 * c(C1orf68, LCE4A, FLG, LCE5A, LCE2B, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, HRNR, FLG2, CRNN, CRCT1, LCE3D) 0.0286237278639037 34 0.114909248854784 1.4060388068908 531 0.450283543758087 5 5 0 -6.81274407999784 LTS-036 chr1 152692949 152732174 39226 * KPRP 0.254 1 NA 1.5246462982738 7 0.445370044109925 5 5 0 -5.76447293082826 LTS-036 chr1 152732175 153637617 905443 * c(PGLYRP3, S100A16, LELP1, SPRR4, SNAPIN, CHTOP, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, ILF2, IVL, LOR, SMCP, KPRP, LCE6A, PGLYRP4, S100A14, PRR9, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.218826427182721 48 0.095341210214934 1.34132216487292 1077 0.350497038043195 5 4 1 -6.8173698622455 LTS-036 chr1 153637618 153655947 18330 * c(ILF2, NPR1) 0 1 NA 1.35564718555181 107 0.274101226978154 5 5 0 -5.76571640830323 LTS-036 chr1 153655948 154832322 1176375 * c(MIR190B, ADAR, HAX1, JTB, SLC27A3, CHRNB2, TDRD10, SHE, CREB3L4, CRTC2, C1orf43, SLC39A1, IL6R, KCNN3, C1orf189, NPR1, UBE2Q1, ATP8B2, GATAD2B, RAB13, RPS27, INTS3, TPM3, AQP10, NUP210L, UBAP2L, DENND4B) 0.0736099773990089 45 0.104997315983011 1.35089068402661 2776 0.326597043942854 4 4 0 -6.79400785893228 LTS-036 chr1 154832323 154917314 84992 * c(PMVK, KCNN3, PBXIP1) 0.236 1 NA 1.35537529728814 79 0.357017915447762 5 5 0 -5.76799429525975 LTS-036 chr1 154917315 155532164 614850 * c(MIR4258, LOC100505666, SCAMP3, FAM189B, CKS1B, CLK2, DCST2, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, FDPS, RUSC1, GBA, GBAP1, RUSC1-AS1, MTX1, MUC1, ZBTB7B, PKLR, DPM3, ASH1L, LENEP, SLC50A1, PBXIP1, HCN3, ASH1L-AS1, POU5F1P4, SHC1, MIR555, MIR92B, THBS3, TRIM46, FLAD1, ADAM15, PYGO2) 0.229132410380703 34 0.0724797900407374 1.32889702894579 2322 0.297969957981024 5 4 1 -6.80640565136965 LTS-036 chr1 155532165 155581311 49147 * c(MSTO1, ASH1L, ASH1L-AS1) 0.005 1 NA 1.16699885546463 41 0.315521979443897 4 4 0 -5.76528263042565 LTS-036 chr1 155581312 156202277 620966 * c(MSTO2P, PMF1-BGLAP, PMF1, KIAA0907, SYT11, LAMTOR2, RXFP4, LMNA, GON4L, MSTO1, YY1AP1, UBQLN4, RAB25, RIT1, SEMA4A, SSR2, SCARNA4, SNORA80E, DAP3, ARHGEF2, MEX3A, SLC25A44) 0.0652375108525376 9 0.110122785007362 1.31570259689988 1560 0.311597268667673 4 4 0 -6.76616187103316 LTS-036 chr1 156202278 156203389 1112 * c(PMF1-BGLAP, PMF1) NA 0 NA 1.112 1 NA NA NA NA NA LTS-036 chr1 156203390 156281020 77631 * c(PMF1-BGLAP, PMF1, GLMP, SMG5, VHLL, BGLAP, CCT3, PAQR6, TMEM79) 0 10 0 1.19979538267099 378 0.271043150027069 0 0 0 -Inf LTS-036 chr1 156281021 156347131 66111 * c(TSACC, RHBG, CCT3) 0.285 1 NA 1.09572659326071 87 0.199979211696948 4 4 0 -5.77802540209383 LTS-036 chr1 156347132 156873727 526596 * c(C1orf61, NES, IQGAP3, NAXE, CRABP2, TTC24, HDGF, INSRR, PEAR1, MIR9-1, MEF2D, NTRK1, RRNAD1, GPATCH4, PRCC, RHBG, HAPLN2, BCAN, MRPL24, ISG20L2, SH2D2A) 0.223359467733862 28 0.101551059693475 1.18052364119442 1550 0.246711929926593 4 3 1 -6.99123645964778 LTS-036 chr1 156873728 156876729 3002 * PEAR1 0 1 NA 1.31079354384035 29 0.255516751593369 4 4 0 -5.76451587109054 LTS-036 chr1 156876730 156954267 77538 * c(LRRC71, PEAR1, MIR765, ARHGEF11) 0.0134582950394747 17 0.0531153018829569 1.2367261364304 421 0.294405356844389 8 8 0 -7.14432367482324 LTS-036 chr1 156954268 157014702 60435 * ARHGEF11 0.253 1 NA 1.34185106826468 19 0.227550238653162 4 4 0 -5.76950557255699 LTS-036 chr1 157014703 158436299 1421597 * c(FCRL1, FCRL3, OR10T2, ETV3, CYCSP52, OR10K2, OR10K1, ETV3L, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, ARHGEF11) 0.246466568517235 48 0.078145047782363 1.22904598562252 1428 0.310670777860452 4 3 1 -6.91473176319286 LTS-036 chr1 158436300 158507157 70858 * OR10R2 0.008 1 NA 1.14853348355997 33 0.362150931723894 4 4 0 -5.76600841204442 LTS-036 chr1 158507158 158725080 217923 * c(OR6P1, OR10X1, OR10Z1, OR6K6, OR6Y1, OR6K3, SPTA1, OR6K2) 0.16200263695596 18 0.151021543284221 1.12369533949288 476 0.300467344311805 3 3 0 -6.84596902366278 LTS-036 chr1 158725081 158813819 88739 * c(OR6K6, OR6N1, MNDA, OR6N2) 0.293 1 NA 1.11259268973003 81 0.162745968640215 4 4 0 -5.78525998959519 LTS-036 chr1 158813820 161209164 2395345 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, NCSTN, ACKR1, ARHGAP30, CFAP45, OR10J1, USP21, C1orf204, APCS, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, VSIG8, LY9, MNDA, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SLAMF1, USF1, NECTIN4, NA NA NA NA NA NA NA NA NA LTS-036 TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.200194993918986 77 0.105974617797022 1.18054552907653 4534 0.308946667005844 4 3 1 -7.1640451220574 LTS-036 NA NA NA NA LTS-036 chr1 161209165 161274905 65741 * c(MPZ, PCP4L1, TOMM40L) 0 1 NA 1.11303129925066 46 0.441432238578062 4 4 0 -5.76649996984747 LTS-036 chr1 161274906 161332632 57727 * c(MPZ, SDHC) 0 1 NA 1.26623414463826 82 0.382513569870665 4 4 0 -5.76458699138531 LTS-036 chr1 161332633 161332900 268 * SDHC NA 0 NA 0.876 1 NA NA NA NA NA LTS-036 chr1 161332901 161518487 185587 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, SDHC) 0.129943614695506 4 0.168865577704082 1.01329066427276 207 0.249335529038668 3 3 0 -6.74860697381331 LTS-036 chr1 161518488 161518754 267 * FCGR3A NA 0 NA 0.424 1 NA NA NA NA NA LTS-036 chr1 161518755 161565314 46560 * c(FCGR3A, FCGR2C) NA 0 NA 0.399913918885207 41 0.499101151828061 1 NA NA -5.7665022114812 LTS-036 chr1 161565315 161565365 51 * FCGR2C NA 0 NA 0.429 1 NA NA NA NA NA LTS-036 chr1 161565366 161570491 5126 * FCGR2C 0.00733333333333333 2 0.0014142135623731 0.68327612604475 40 0.26998694056736 20 20 0 -15.6763471112718 LTS-036 chr1 161570492 161593962 23471 * c(FCGR3B, HSPA7, FCGR2C) 0.00198209661789643 6 0.00497995983919549 1.09928548244953 74 0.377242772009871 20 20 0 -10.97288434672 LTS-036 chr1 161593963 161642985 49023 * c(FCGR2B, FCGR3B) 0.372 1 NA 1.50221551819138 47 0.698776427648492 5 5 0 -5.76441416935579 LTS-036 chr1 161642986 172387577 10744592 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, NA NA NA NA NA NA NA NA NA LTS-036 MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.201217472077136 235 0.1162313893888 1.16571046921988 7092 0.329937498164791 4 3 1 -7.24136720182271 LTS-036 NA NA NA NA LTS-036 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 0.931 1 NA NA NA NA NA LTS-036 chr1 172389836 174652805 2262970 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.190332696982286 32 0.117966643727191 1.0844672083433 1515 0.263962840809207 3 3 0 -7.24602192805693 LTS-036 chr1 174652806 174668661 15856 * RABGAP1L NA 0 NA 1.412 1 NA NA NA NA NA LTS-036 chr1 174668662 175331979 663318 * c(CACYBP, TNN, MRPS14, TNR, KIAA0040, RABGAP1L) 0.122150608448616 7 0.0764011966996778 1.62261272464857 549 0.392249384042228 5 5 0 -7.02456656679854 LTS-036 chr1 175331980 175332808 829 * TNR NA 0 NA 1.211 1 NA NA NA NA NA LTS-036 chr1 175332809 178514622 3181814 * c(RASAL2-AS1, C1orf220, ASTN1, MIR488, BRINP2, PAPPA2, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, RASAL2) 0.198548749806225 30 0.127194592525846 1.24476381054074 1352 1.3184055132293 5 4 1 -6.83821770621796 LTS-036 chr1 178514623 178888856 374234 * c(MIR4424, C1orf220, RALGPS2, TEX35, ANGPTL1) 0.01 1 NA 1.22651542848997 239 0.341744238949193 4 4 0 -5.76444969477373 LTS-036 chr1 178888857 179067071 178215 * c(RALGPS2, TOR3A, FAM20B) 0.0330663337151943 9 0.0755862274344856 1.22735559593105 231 0.409308064818501 6 6 0 -6.88404370365942 LTS-036 chr1 179067072 179068851 1780 * ABL2 0.223 1 NA 1.43607936151145 11 0.372629135639274 5 5 0 -5.76442056780775 LTS-036 chr1 179068852 179076723 7872 * ABL2 0.222529931561391 10 0.0481968187055259 1.27274145705472 161 0.299483056816034 10 8 2 -6.76541544139476 LTS-036 chr1 179076724 179076773 50 * ABL2 NA 0 NA 1.082 1 NA NA NA NA NA LTS-036 chr1 179076774 179310439 233666 * c(ABL2, SOAT1) 0.261889000325503 3 0.0320052079095471 1.10140983651239 145 0.254876045675155 5 4 1 -7.1424961732517 LTS-036 chr1 179310440 179312102 1663 * SOAT1 0.002 1 NA 1.0391208757826 9 0.40552500265431 3 3 0 -5.76443536264791 LTS-036 chr1 179312103 179504130 192028 * c(AXDND1, SOAT1) 2.97916956908069e-05 9 0.00133333333333333 1.16862370973931 247 0.30879520152038 20 20 0 -20.3627624707591 LTS-036 chr1 179504131 179520050 15920 * c(AXDND1, NPHS2) 0.314 1 NA 1.15433912284228 11 0.256516063647271 4 4 0 -5.7650268610232 LTS-036 chr1 179520051 180920181 1400131 * c(MIR3121, LHX4-AS1, AXDND1, FAM163A, TDRD5, TOR1AIP2, FLJ23867, TOR1AIP1, QSOX1, KIAA1614, NPHS2, ACBD6, LHX4, XPR1, CEP350) 0.215053758405773 50 0.0958276003017494 1.15725299207334 1650 0.27986376525277 4 3 1 -7.12216093368685 LTS-036 chr1 180920182 180945052 24871 * STX6 0 1 NA 1.15069558277639 90 0.317453971812805 4 4 0 -5.76510172702389 LTS-036 chr1 180945053 181549921 604869 * c(GM140, STX6, MR1, IER5, CACNA1E) 0.0195540196252849 8 0.112429978208661 1.15276459540104 295 0.331593979834133 4 4 0 -6.93625373864154 LTS-036 chr1 181549922 181620446 70525 * CACNA1E NA 0 NA 1.237 1 NA NA NA NA NA LTS-036 chr1 181620447 182783983 1163537 * c(ZNF648, TEDDM1, GLUL, LOC284648, RGSL1, LINC00272, RGS16, RNASEL, CACNA1E, NPL, RGS8) 0.093215146818725 35 0.138545341909087 1.24738247292978 1075 0.32487730127859 4 4 0 -6.73692465604542 LTS-036 chr1 182783984 182798924 14941 * NPL 0.306 1 NA 1.16540481031439 51 0.26111398457604 4 4 0 -5.76481719708805 LTS-036 chr1 182798925 183520033 721109 * c(DHX9, NMNAT2, SMG7-AS1, LAMC1, LAMC2, NPL, SHCBP1L, SMG7) 0.213159754666133 38 0.0940588175900037 1.24515140450501 912 0.302362297830571 5 4 1 -6.93846926987294 LTS-036 chr1 183520034 190250883 6730850 * c(GS1-279B7.1, MIR548F1, RNU6-72P, ARPC5, PRG4, IVNS1ABP, OCLM, TSEN15, FAM129A, COLGALT2, RGL1, BRINP3, APOBEC4, NCF2, PDC, PLA2G4A, SWT1, C1orf27, PTGS2, RNF2, TPR, EDEM3, C1orf21, TRMT1L, HMCN1, SMG7) 0.211683970890851 58 0.0993832599857554 1.13049815434489 3010 0.274299378790944 4 3 1 -7.45854473883926 LTS-036 chr1 190250884 196716667 6465784 * c(MIR1278, MIR4735, CFHR4, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.192831846045287 8 0.153357425643495 1.03947406841661 951 0.25431419919702 3 3 0 -7.16477451629276 LTS-036 chr1 196716668 196743863 27196 * CFHR4 NA 0 NA 0.314 1 NA NA NA NA NA LTS-036 chr1 196743864 196801352 57489 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.268509538443914 111 0.0912758443986128 0 NA NA -6.09751351115901 LTS-036 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.079 1 NA NA NA NA NA LTS-036 chr1 196857130 198828267 1971138 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LHX9, PTPRC, CFHR5) 0.253844299906897 24 0.087260884458741 1.05899985226326 1634 0.24861379392498 4 3 1 -7.2442843702561 LTS-036 chr1 199996643 203712712 3716070 * c(MIR1231, PCAT6, MIR5191, TIMM17A, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, KIF21B, CAMSAP2, FMOD, ZNF281, PHLDA3, NR5A2, TMEM9, LMOD1, OPTC, GPR25, UBE2T, RPS10P7, LAD1, NA, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CYB5R1, PKP1, LINC00862, PRELP, IPO9, C1orf106, PTPN7, RABIF, KLHL12, LGR6, RNPEP, MGAT4EP, ASCL5, SNORA77, TNNI1, TNNT2, LINC01136, CACNA1S, NA NA NA NA NA NA NA NA NA LTS-036 BTG2, DDX59, LINC00260, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, KIF14) 0.198685230081085 140 0.118263136154395 1.19785507844369 5645 0.342805567730804 4 3 1 -7.08686436631714 LTS-036 NA NA NA NA LTS-036 chr1 203712713 203743122 30410 * c(ATP2B4, LAX1) 0 1 NA 1.1666783445469 47 0.426210803944134 4 4 0 -5.76470902624983 LTS-036 chr1 203743123 204519187 776065 * c(ZBED6, LINC00628, GOLT1A, PLEKHA6, LINC00303, KISS1, MDM4, PIK3C2B, LAX1, ETNK2, REN, SNRPE, PPP1R15B, SOX13, ZC3H11A) 0.0890970409747695 24 0.13600697312686 1.2260551175405 1152 0.350182174221172 4 4 0 -6.73410151813362 LTS-036 chr1 204519188 204520368 1181 * MDM4 NA 0 NA 1.24484703343109 19 0.230556091030168 4 NA NA -5.76441154751877 LTS-036 chr1 204520369 204520449 81 * MDM4 NA 0 NA 1.787 1 NA NA NA NA NA LTS-036 chr1 204520450 204586812 66363 * c(LRRN2, MDM4) 0.41 1 NA 1.40855586313218 122 0.310104779373826 5 5 0 -5.76571722898621 LTS-036 chr1 204586813 205045072 458260 * c(LRRN2, NFASC, MDM4, CNTN2) 0.342337991946049 22 0.152264039294699 1.56653075931088 622 0.364112038453124 6 4 2 -6.75780670677623 LTS-036 chr1 205045073 205119981 74909 * c(DSTYK, TMEM81, RBBP5, CNTN2) 0.257493902965071 11 0.111464303295229 1.25150166574303 303 0.275426328293475 5 4 1 -6.76225485703791 LTS-036 chr1 205119982 205210806 90825 * c(DSTYK, TMCC2) 0 1 NA 1.27542494348531 91 0.310790637356759 4 4 0 -5.76508414822228 LTS-036 chr1 205210807 206515372 1304566 * c(SLC26A9, MFSD4A, PM20D1, CTSE, ELK4, SLC41A1, LEMD1-AS1, LOC284578, LOC284581, C1orf186, MIR135B, CDK18, KLHDC8A, AVPR1B, NUCKS1, FAM72A, NUAK2, SLC45A3, RAB29, LEMD1, TMCC2) 0.0907304337747482 38 0.1299172622146 1.2008346601189 1510 0.288770190446437 4 4 0 -6.74102856387607 LTS-036 chr1 206515373 206516261 889 * c(SRGAP2, SRGAP2C) 0.444 1 NA 1.22137029661898 5 0.369362694380469 4 4 0 -5.76441043296125 LTS-036 chr1 206516262 219783284 13267023 * c(MIR4260, MIR3122, LINC00538, LINC00210, CENPF, IL24, LYPLAL1, SPATA17, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, SPATA45, FAM71A, CD55, EIF2D, ESRRG, SRGAP2, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, IL19, HSD11B1, RD3, IL10, IRF6, KCNH1, KCNK2, LAMB3, MIR205, MIR29C, CD46, ATF3, NEK2, G0S2, IL20, RRP15, KCTD3, DTL, PFKFB2, PIGR, PLXNA2, GPATCH2, TMEM206, PPP2R5A, YOD1, BATF3, HHAT, NA NA NA NA NA NA NA NA NA LTS-036 RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, MIR205HG, FLVCR1-AS1, LYPLAL1-AS1, SRGAP2C, SNORA16B, TGFB2, TRAF5, C4BPA, C4BPB, TGFB2-AS1, USH2A, SLC30A1, C1orf116, VASH2, TRAF3IP3, RASSF5, FCAMR, DYRK3, LINC00467, ANGEL2, FCMR, MAPKAPK2, CD34, IKBKE, LPGAT1) 0.16905603703698 171 0.128506240855332 1.17114870108147 7763 0.276517712584767 4 4 0 -7.24388888143428 LTS-036 NA NA NA NA LTS-036 chr1 219783285 219785375 2091 * character(0) NA 0 NA 0.633095534195583 41 0.46261208397955 2 NA NA -5.76449953770787 LTS-036 chr1 219785376 220088471 303096 * c(RNU5F-1, SLC30A10) NA 0 NA 2.105 1 NA NA NA NA NA LTS-036 chr1 220088472 220324489 236018 * c(BPNT1, EPRS, RAB3GAP2, RNU5F-1, MIR194-1, MIR215, SLC30A10, IARS2) 0.385204091126085 4 0.0766393067122435 1.42553185728239 458 0.307160028490447 5 3 2 -6.74451898567197 LTS-036 chr1 220324490 220324603 114 * RAB3GAP2 NA 0 NA 1.066 1 NA NA NA NA NA LTS-036 chr1 220324604 227170648 6846045 * c(MIR320B2, MIR4742, LEFTY1, DUSP10, DNAH14, PARP1, BROX, CNIH3, SDE2, CCDC185, EPHX1, FBXO28, RAB3GAP2, LIN9, CNIH4, PYCR2, H3F3A, HLX, ITPKB, MIA3, STUM, CAPN8, LBR, C1orf140, FAM177B, MARK1, H3F3AP4, NVL, MARC2, SUSD4, ENAH, PSEN2, COQ8A, ACBD3, MARC1, AIDA, SRP9, SNORA36B, AURKAPS1, LEFTY2, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, MIXL1, DISP1, DEGS1, TAF1A, TMEM63A) 0.216372629614228 110 0.0942046753123693 1.15387458341447 4951 0.288591538474343 4 3 1 -7.28491083898461 LTS-036 chr1 227170649 227172290 1642 * COQ8A 0 1 NA 1.27728626916827 15 0.255057659214166 4 4 0 -5.76442977621764 LTS-036 chr1 227172291 227221222 48932 * c(COQ8A, CDC42BPA) 0.000822158184274798 16 0.00752080447824566 1.23867538562653 216 0.352425370594871 20 20 0 -9.8067101317532 LTS-036 chr1 227221223 227381442 160220 * CDC42BPA 0.258 1 NA 1.09887852020318 105 0.203867798145953 4 4 0 -5.79454110048701 LTS-036 chr1 227381443 228404997 1023555 * c(NA, MIR3620, MIR5008, SNAP47, MRPL55, IBA57, GUK1, ZNF678, PRSS38, ARF1, ZNF847P, GJC2, C1orf145, JMJD4, WNT9A, C1orf35, OBSCN, CDC42BPA, WNT3A) 0.244345693911565 40 0.0728541922838579 1.18052240721879 940 0.310134420571676 4 3 1 -6.97267955001679 LTS-036 chr1 228404998 228456147 51150 * OBSCN 0 1 NA 1.13008771861987 65 0.208341508429346 4 4 0 -5.76968563432381 LTS-036 chr1 228456148 228603029 146882 * c(TRIM17, TRIM11, OBSCN) 0.00437730790597416 22 0.06095658805827 1.19001279831679 854 0.307888760970415 6 6 0 -7.32119687988517 LTS-036 chr1 228603030 228699477 96448 * c(MIR4666A, HIST3H2BB, RNF187, TRIM17, HIST3H3, HIST3H2A) 0.268 1 NA 1.15422198597505 95 0.240773118800339 4 4 0 -5.76866187385756 LTS-036 chr1 228699478 233134086 4434609 * c(LINC00582, MIR1182, TSNAX-DISC1, SPHAR, CAPN9, CCSAP, C1orf131, EXOC8, LOC149373, AGT, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, FAM89A, TRIM67, EGLN1, MAP10, NUP133, DUSP5P1, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TSNAX, TTC13, PGBD5, PCNX2, SPRTN, NTPCR, GNPAT, C1orf198, URB2) 0.238773517597585 72 0.0796109660013508 1.16925064651706 3180 0.267540750887272 4 3 1 -7.07298865121756 LTS-036 chr1 233134087 233296931 162845 * PCNX2 0 1 NA 1.27281285338511 125 0.399833489213665 4 4 0 -5.76505625349491 LTS-036 chr1 233296932 233512362 215431 * c(PCNX2, MLK4) 0.0142492094779239 9 0.074 1.1850141972466 240 0.392303583537299 6 6 0 -7.07327737215159 LTS-036 chr1 233512363 233514934 2572 * MLK4 0.293 1 NA 1.05699436804007 7 0.100393985780785 3 3 0 -5.76542795872744 LTS-036 chr1 233514935 234740491 1225557 * c(LINC01354, MIR4671, MIR4427, SLC35F3, IRF2BP2, KCNK1, COA6, TARBP1, MLK4) 0.280555321462489 18 0.0743158776655609 1.11049644415987 426 0.323948939075925 4 3 1 -6.81767090528638 LTS-036 chr1 234740492 236902865 2162374 * c(LGALS8-AS1, MIR1537, LINC00184, LINC01132, MIR4753, LYST, EDARADD, B3GALNT2, RBM34, GNG4, IRF2BP2, LGALS8, NID1, ARID4B, HEATR1, ERO1B, SNORA14B, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.205698344213899 83 0.0856155581803166 1.24874496982892 2016 0.339420021673275 5 4 1 -7.17243443128158 LTS-036 chr1 236902866 236925844 22979 * ACTN2 0.007 1 NA 1.34091990025725 65 0.224361633949438 4 4 0 -5.7663716970603 LTS-036 chr1 236925845 243727157 6801313 * c(AKT3, LOC100130331, MIR3123, MIR4677, SDCCAG8, CHML, CHRM3, WDR64, PLD5, FH, OPN3, LINC01139, MAP1LC3C, MTR, FMN2, ZP4, RGS7, RYR2, GREM2, MT1HL1, RPS7P5, LINC01347, KMO, ACTN2, EXO1, CEP170) 0.131868079930547 46 0.121743114755366 1.29645479916001 2664 0.344547880311113 4 4 0 -6.91372698888297 LTS-036 chr1 243727158 243736212 9055 * AKT3 NA 0 NA 1.758 1 NA NA NA NA NA LTS-036 chr1 243736213 248569369 4833157 * c(AKT3, MIR3916, ZNF670-ZNF695, ZBTB18, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2B11, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, C1orf100, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, OR6F1, OR2W3, OR2T8, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, ZNF695, NA NA NA NA NA NA NA NA NA LTS-036 TFB2M, SMYD3, ZNF124, ZNF669, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, ZNF670) 0.175986860135705 80 0.0975774400350689 1.36260514346725 3158 0.719937050730876 5 4 1 -7.04175503090304 LTS-036 NA NA NA NA LTS-036 chr1 248569370 248570481 1112 * OR2T1 NA 0 NA 1.40113718906016 23 0.218273589066095 5 NA NA -5.76446300640872 LTS-036 chr1 248570482 248604490 34009 * character(0) NA 0 NA 0.381 1 NA NA NA NA NA LTS-036 chr1 248604491 248604542 52 * character(0) 0.365 1 NA 0.564 1 NA NA NA NA NA LTS-036 chr1 248604543 248814126 209584 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T27, OR2T35) 0.297753508369091 10 0.132573711153037 1.2012560775677 245 0.369651891889723 4 3 1 -6.73560785862716 LTS-036 chr1 248814127 249214134 400008 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) NA 0 NA 1.19533754285717 323 0.262118990738649 4 NA NA -5.76761224284166 LTS-036 chr2 38824 38938 115 * FAM110C 0.444 1 NA 1.00582054074667 3 0.0496890329952194 3 3 0 -5.7644383789002 LTS-036 chr2 38939 1241883 1202945 * c(TMEM18, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2, FAM110C) 0.254997754495595 14 0.225225259645577 0.931645989506588 412 0.199777926220292 3 2 1 -6.87956348402269 LTS-036 chr2 1241884 1320143 78260 * SNTG2 0.498 1 NA 0.966831843334758 28 0.145175113198039 3 3 0 -5.7645389657034 LTS-036 chr2 1320144 1637155 317012 * c(SNTG2, TPO, PXDN) 0.451025458142734 19 0.0532341731689566 0.987416215488414 220 0.26824973123258 4 2 2 -7.6685457649343 LTS-036 chr2 1637156 1652660 15505 * PXDN 0.437 1 NA 0.986452106340153 59 0.132804732669009 3 3 0 -5.76449235792437 LTS-036 chr2 1652661 3392514 1739854 * c(MYT1L, TRAPPC12, TSSC1, MYT1L-AS1, PXDN) 0.243862160385996 9 0.233435215852279 0.985436084284692 421 0.24059473834436 3 2 1 -6.86288239612154 LTS-036 chr2 3392515 3425514 33000 * TRAPPC12 0.485 1 NA 0.904222426925572 13 0.153155610493514 3 3 0 -5.76909809617835 LTS-036 chr2 3425515 3673648 248134 * c(RNASEH1-AS1, RNASEH1, TRAPPC12, ADI1, RPS7, COLEC11) 0.450817701857291 19 0.0448679674481024 0.90171206913027 309 0.206575062740019 2 1 1 -7.99126017774407 LTS-036 chr2 3673649 3721729 48081 * c(ALLC, COLEC11) 0 1 NA 0.941130210755146 43 0.16769388540629 3 3 0 -5.76563425785762 LTS-036 chr2 3721730 9002893 5281164 * c(LINC01304, LOC100506274, CMPK2, MBOAT2, LINC01105, LINC00298, LINC00299, ID2, RNF144A-AS1, LOC400940, LINC00487, ALLC, KIDINS220, SOX11, LINC01249, RSAD2, RNF144A) 0.242786866095773 29 0.228146801542751 0.949046123921738 1094 0.253013151301546 3 2 1 -6.90266928081038 LTS-036 chr2 9002894 9419415 416522 * c(MBOAT2, ASAP2) 0.487 1 NA 0.996884545347016 63 0.243290677615572 3 3 0 -5.7666440013139 LTS-036 chr2 9419416 16743453 7324038 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LOC100506474, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, C2orf50, PQLC3, FAM84A, DDX1, E2F6, CYS1, LPIN1, NTSR2, ATP6V1C2, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, C2orf48, KCNF1, MYCN, ODC1, NBAS, CPSF3, RRM2, ADAM17, NOL10, FAM49A, KLF11, ASAP2, TAF1B, ITGB1BP1, ROCK2, GREB1) 0.42743816989069 98 0.106958574951863 0.961817554912684 3428 0.258508867582194 3 2 1 -7.02389604772914 LTS-036 chr2 16743454 17837741 1094288 * c(RAD51AP2, VSNL1, FAM49A) 0 1 NA 0.958261767288614 135 0.217976975014021 3 3 0 -5.76817350729203 LTS-036 chr2 17837742 20205848 2368107 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, MSGN1, GEN1, KCNS3, LINC00954, MATN3, WDR35, RDH14, SMC6, NT5C1B) 0.090682243404238 13 0.216150944409759 0.956284066383669 841 0.248370155921617 3 3 0 -6.74368778288384 LTS-036 chr2 20205849 20240668 34820 * c(MATN3, LAPTM4A) 0.432 1 NA 0.959233459804469 39 0.16608845991886 3 3 0 -5.76459194974855 LTS-036 chr2 20240669 24255991 4015323 * c(KLHL29, GDF7, UBXN2A, PUM2, APOB, RHOB, MFSD2B, ATAD2B, LDAH, SDC1, HS1BP3, LOC645949, WDCP, LAPTM4A) 0.404960585063256 32 0.157106497678814 0.971580785538096 1850 0.212119309593318 3 2 1 -6.79929173577298 LTS-036 chr2 24255992 24276736 20745 * c(FKBP1B, WDCP) 0 1 NA 0.902640154327939 49 0.260560469955443 3 3 0 -5.76547735831416 LTS-036 chr2 24276737 25047408 770672 * c(ADCY3, FKBP1B, PFN4, FAM228B, PTRHD1, ITSN2, SF3B6, FAM228A, CENPO, NCOA1, TP53I3) 0.109498410073276 10 0.233032568062444 0.976836390701136 782 0.241372859408168 3 3 0 -6.73328703208016 LTS-036 chr2 25047409 25050977 3569 * ADCY3 0.426 1 NA 1.09666395850668 15 0.258606282839009 4 4 0 -5.76484411944447 LTS-036 chr2 25050978 26535917 1484940 * c(MIR1301, RAB10, ADCY3, GAREM2, ADGRF3, DNMT3A, DTNB, EFR3B, HADHA, HADHB, KIF3C, DNAJC27, POMC, ASXL2, DNAJC27-AS1) 0.39014652886908 32 0.152927266999497 0.962615835255874 1577 0.229924383144839 3 2 1 -6.7713617998819 LTS-036 chr2 26535918 26535922 5 * ADGRF3 NA 0 NA 1.057 1 NA NA NA NA NA LTS-036 chr2 26535923 27549071 1013149 * c(OST4, PREB, CENPA, CGREF1, EMILIN1, CIB4, TCF23, ADGRF3, MAPRE3, DNAJC5G, GTF3C2, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, DRC1, OTOF) 0.397502091624955 37 0.133104815434649 1.02256188444842 2398 0.214287336769652 3 2 1 -6.83138986527609 LTS-036 chr2 27549072 29286193 1737122 * c(BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, GPN1, ZNF513, PLB1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, SPDYA, FTH1P3, IFT172, GCKR, SNORD53, GTF3C2, NRBP1, C2orf71, PPM1G, PPP1CB, TRMT61B, RBKS, FNDC4, SNORD92, CCDC121, C2orf16, ZNF512, EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.361464870947676 45 0.175751152703952 0.950162988354575 2819 0.199664151983322 3 2 1 -6.75083959199474 LTS-036 chr2 29286194 29286670 477 * C2orf71 0 1 NA 0.976896209649809 11 0.300505513487463 3 3 0 -5.76441015859415 LTS-036 chr2 29286671 29297068 10398 * C2orf71 0.015482010708198 11 0.127840810100972 1.05491031606451 111 0.394215523271064 9 9 0 -6.78861250122621 LTS-036 chr2 29297069 29356567 59499 * c(C2orf71, CLIP4) 0.49 1 NA 0.914020525957704 29 0.125117560481679 3 3 0 -5.77367118806791 LTS-036 chr2 29356568 30864980 1508413 * c(ALK, LCLAT1, YPEL5, CLIP4, LBH) 0.463304267208556 15 0.0216612447428472 0.942421344508107 559 0.188491914382624 4 2 2 -12.02599290254 LTS-036 chr2 30864981 30866992 2012 * LCLAT1 0.391 1 NA 0.949105209430258 42 0.180482274297661 3 3 0 -5.76443538593475 LTS-036 chr2 30866993 31412646 545654 * c(LCLAT1, CAPN14, GALNT14, CAPN13) 0.0325396399777053 9 0.123333333333333 1.05985787952055 281 0.348909170745919 4 4 0 -6.89450893832886 LTS-036 chr2 31412647 31414807 2161 * CAPN14 0.474 1 NA 1.00281282664666 7 0.0823950992532467 3 3 0 -5.76456995906764 LTS-036 chr2 31414808 33789068 2374261 * c(LOC100271832, MIR4765, RASGRP3, LINC00486, EHD3, LTBP1, CAPN14, MEMO1, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, YIPF4, DPY30) 0.330794546087242 35 0.210450489197249 0.974882178960084 1897 0.230298682642569 3 2 1 -6.73948778701565 LTS-036 chr2 33789069 33809294 20226 * c(RASGRP3, FAM98A) 0.469 1 NA 1.03793800299595 30 0.206500844672787 3 3 0 -5.76555242399008 LTS-036 chr2 33809295 42285642 8476348 * c(SLC8A1-AS1, ARHGEF33, LOC100288911, CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, FAM98A, CYP1B1-AS1, CDKL4, LOC375196, LOC388942, SULT6B1, C2orf91, CRIM1, VIT, HEATR5B, NDUFAF7, EIF2AK2, ATL2, SRSF7, SLC8A1, SOS1, STRN, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, HNRNPLL, FEZ2) 0.437978944245448 91 0.0902435830045786 0.925945177036679 3712 0.219098384415103 3 2 1 -7.48867585532678 LTS-036 chr2 42285643 42936547 650905 * c(KCNG3, EML4, MTA3, PKDCC, COX7A2L) 0 1 NA 0.924937755967505 425 0.271896792376763 3 3 0 -5.77860754159236 LTS-036 chr2 42936548 44040169 1103622 * c(LINC01126, PLEKHH2, OXER1, HAAO, DYNC2LI1, MTA3, THADA, ABCG5, ZFP36L2, C1GALT1C1L) 0.0538785839011025 14 0.157086051171094 0.975515699113208 910 0.284230091192715 3 3 0 -6.79652400134283 LTS-036 chr2 44040170 44099433 59264 * c(ABCG5, ABCG8) 0.454 1 NA 0.992569723157696 127 0.159596132501108 3 3 0 -5.76489661334412 LTS-036 chr2 44099434 47630550 3531117 * c(LINC01119, MIR548AD, LRPPRC, SIX2, EPAS1, RHOQ, C2orf61, TMEM247, LINC01118, LINC01121, EPCAM, MSH2, PIGF, PPM1B, SRBD1, PRKCE, TTC7A, ABCG8, SIX3, SLC3A1, MIR559, CAMKMT, CALM2, MCFD2, ATP6V1E2, CRIPT, PREPL, SOCS5) 0.378528914097121 53 0.146660785715758 0.963382001166876 2033 0.231462922869081 3 2 1 -6.75663677134412 LTS-036 chr2 47630551 47693768 63218 * MSH2 0 1 NA 1.01027077434651 47 0.203527120113381 3 3 0 -5.7656194373735 LTS-036 chr2 47693769 49189921 1496153 * c(GTF2A1L, STON1, PPP1R21, FSHR, STON1-GTF2A1L, MSH6, FOXN2, LHCGR, MSH2, KCNK12, FBXO11) 0.269231714456324 34 0.225778992153129 0.97676896256545 972 1.10691774611761 4 3 1 -6.77741291311323 LTS-036 chr2 49189922 49510173 320252 * FSHR 0.488 1 NA 0.998454591755742 75 0.161138363688639 3 3 0 -5.7688777278536 LTS-036 chr2 49510174 61009909 11499736 * c(MIR216B, MIR3682, MIR4432, GPR75, CFAP36, CCDC85A, C2orf73, CLHC1, EFEMP1, PSME4, ERLEC1, PRORSD1P, TSPYL6, EML6, LINC01122, MIR216A, MIR217, MTIF2, CHAC2, ASB3, BCL11A, FANCL, CCDC88A, RPL23AP32, RTN4, PPP4R3B, RPS27A, PAPOLG, SPTBN1, VRK2, PNPT1, NRXN1, ACYP2) 0.435364384087696 81 0.0792347504508744 0.940794517430916 3139 0.235626443929882 3 2 1 -7.47266267584319 LTS-036 chr2 61009910 61026177 16268 * PAPOLG 0 1 NA 0.990009838710732 87 0.28775391748425 3 3 0 -5.76444063502196 LTS-036 chr2 61026178 61749716 723539 * c(SNORA70B, AHSA2, PUS10, LOC339803, C2orf74, LINC01185, PEX13, REL, PAPOLG, XPO1, KIAA1841, USP34) 0.00360906441504395 10 0.0101192885125388 0.941136725216396 1025 0.281792775714925 15 15 0 -13.6269627331157 LTS-036 chr2 61749717 62052380 302664 * c(XPO1, FAM161A) 0.488 1 NA 0.874988476606892 27 0.133440832732923 3 3 0 -5.8798371927164 LTS-036 chr2 62052381 69420446 7368066 * c(LOC100132215, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, WDR92, COMMD1, LINC00309, GKN2, APLF, TMEM17, SPRED2, CEP68, EHBP1, CNRIP1, BMP10, LGALSL, LOC339807, LOC400958, MDH1, MEIS1, OTX1, WDPCP, VPS54, PLEK, ETAA1, AFTPH, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, LOC644838, SLC1A4, MEIS1-AS3, UGP2, FAM161A, ANTXR1, SERTAD2, ARHGAP25) 0.40036991409735 73 0.134453397628852 0.933273346093738 3131 0.238408466730493 3 2 1 -6.94780230596672 LTS-036 chr2 69420447 69659126 238680 * c(GFPT1, NFU1, ANTXR1) 0.002 1 NA 0.937529857752481 256 0.253434413408104 3 3 0 -5.76769271186913 LTS-036 chr2 69659127 70524577 865451 * c(SNORA36C, LOC100133985, SNRNP27, ASPRV1, AAK1, NFU1, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, C2orf42, GMCL1, SNRPG, TIA1, FAM136A) 0.235092554157244 11 0.23438813963168 0.917468910553752 1085 0.226071929781208 3 2 1 -6.91657782161405 LTS-036 chr2 70524578 70781005 256428 * c(TGFA, FAM136A) NA 0 NA 0.903627225658545 143 0.237798482937017 3 NA NA -5.77976196400735 LTS-036 chr2 70781006 70781030 25 * TGFA NA 0 NA 1.517 1 NA NA NA NA NA LTS-036 chr2 70781031 70903319 122289 * c(ADD2, TGFA) 0.468 1 NA 1.01670913667663 126 0.20828745277651 3 3 0 -5.76749181960641 LTS-036 chr2 70903320 71376999 473680 * c(MPHOSPH10, TEX261, ADD2, CLEC4F, VAX2, FIGLA, CD207, ATP6V1B1, NAGK, OR7E91P, ANKRD53, MCEE) 0.395434773966096 26 0.127622743331213 1.01217177931509 672 0.237160201642249 3 2 1 -6.80718768093119 LTS-036 chr2 71377000 71410662 33663 * c(MPHOSPH10, PAIP2B) 0.477 1 NA 0.932665093598907 21 0.285152240040298 3 3 0 -5.76488190820164 LTS-036 chr2 71410663 71633275 222613 * c(ZNF638, PAIP2B) 0.157917685878266 9 0.233370413720334 0.999668111700411 255 0.25777956234664 3 3 0 -6.76477739289664 LTS-036 chr2 71633276 71645828 12553 * ZNF638 0.487 1 NA 0.966376629710291 39 0.206812966805436 3 3 0 -5.7644216169389 LTS-036 chr2 71645829 73161447 1515619 * c(EMX1, EXOC6B, ZNF638, CYP26B1, SPR, DYSF) 0.346577559815789 10 0.197172485121248 1.01333318135067 818 0.201871791962277 3 2 1 -6.76798500283278 LTS-036 chr2 73161448 73169500 8053 * c(EMX1, SFXN5) 0.402 1 NA 1.05637236195666 21 0.126883542405362 3 3 0 -5.76637674640456 LTS-036 chr2 73169501 73301817 132317 * c(RAB11FIP5, SFXN5) 0.126209877509828 9 0.215574297581548 1.08916383623145 179 0.312497365452456 3 3 0 -6.74879555100413 LTS-036 chr2 73301818 73435601 133784 * c(RAB11FIP5, NOTO) 0.497 1 NA 1.07262181717413 95 0.188413198801578 3 3 0 -5.78527711270809 LTS-036 chr2 73435602 73492824 57223 * c(SMYD5, CCT7, FBXO41, NOTO, PRADC1) 0.4648933706631 10 0.0317308122247831 0.990046571351201 403 0.204365184080797 4 2 2 -9.23647358455133 LTS-036 chr2 73492825 73493009 185 * FBXO41 NA 0 NA 0.9 1 NA NA NA NA NA LTS-036 chr2 73493010 85555478 12062469 * c(SNAR-H, DCTN1-AS1, MIR4264, BOLA3-AS1, INO80B-WBP1, MIR5000, SEMA4F, STAMBP, TGOLN2, MTHFD2, MRPL53, TRABD2A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, HTRA2, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, REG3A, TPRKB, AUP1, MOB1A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, TTC31, TACR1, GCFC2, ACTG2, ALMS1, MOGS, NA NA NA NA NA NA NA NA NA LTS-036 LRRTM4, TCF7L1, INO80B, WDR54, EVA1A, DUSP11, LOXL3, PCGF1, CCDC142, LBX2, SUCLG1, NAT8, TMSB10, MRPL19) 0.426147506053112 70 0.109437053766355 0.94535725332658 4699 0.213828508158601 3 2 1 -7.13213196922376 LTS-036 NA NA NA NA LTS-036 chr2 85555479 85569379 13901 * RETSAT 0 1 NA 1.0433776535646 11 0.433001490654583 3 3 0 -5.76461939521113 LTS-036 chr2 85569380 85786074 216695 * c(PARTICL, GGCX, SH2D6, MAT2A, RETSAT, CAPG, ELMOD3) 0.300926384088032 11 0.215752551865241 0.977463497520349 407 0.210520042369052 3 2 1 -6.76730791419281 LTS-036 chr2 85786075 85806266 20192 * c(GGCX, VAMP8) 0.452 1 NA 0.929747518619165 21 0.177479455551501 3 3 0 -5.7652493661801 LTS-036 chr2 85806267 86509388 703122 * c(MIR4779, GNLY, USP39, VAMP5, IMMT, TMEM150A, POLR1A, LOC284950, C2orf68, RNF181, MRPL35, PTCD3, SFTPB, REEP1, SNORD94, ATOH8, VAMP8, ST3GAL5, LOC90784) 0.433279519045123 25 0.128414666867405 0.938474967060562 1264 0.204592774483894 3 2 1 -6.97492628639078 LTS-036 chr2 86509389 86693826 184438 * c(KDM3A, REEP1) 0 1 NA 1.01393629039025 61 0.302805722311321 3 3 0 -5.76633730995458 LTS-036 chr2 86693827 87414330 720504 * c(ANAPC1P1, RNF103-CHMP3, LOC285074, CHMP3, KDM3A, RMND5A, RNF103, CD8A, CD8B) 0.0958147563377181 9 0.207134081642249 0.938863936261573 609 0.245003324086456 3 3 0 -6.74409420998217 LTS-036 chr2 87414331 87424810 10480 * RMND5A 0.421 1 NA 0.735475783459816 37 0.267594444611219 2 2 0 -5.76447120673514 LTS-036 chr2 87424811 88412039 987229 * c(MIR4780, CYTOR, SMYD1, KRCC1, RMND5A) 0.24486627686802 9 0.23676928526404 1.01587201031951 193 0.329225714736142 3 2 1 -6.86435782161351 LTS-036 chr2 88412040 88423510 11471 * c(SMYD1, FABP1) 0.478 1 NA 1.01509523120338 39 0.216241920429752 3 3 0 -5.76465884001141 LTS-036 chr2 88423511 89160889 737379 * c(MIR4436A, TEX37, FABP1, RPIA, FOXI3, THNSL2, ANKRD36BP2, EIF2AK3) 0.459834766938703 13 0.0252713479189581 0.95767604488072 399 0.201464959790906 4 2 2 -10.4041171335727 LTS-036 chr2 89160890 89196757 35868 * character(0) 0.005 1 NA 0.905196891498248 29 0.281394114691923 3 3 0 -5.76587705643671 LTS-036 chr2 89196758 89309861 113104 * character(0) NA 0 NA 1.02587944249103 31 0.247408269087561 3 NA NA -5.76736930272584 LTS-036 chr2 89309862 89345702 35841 * character(0) NA 0 NA 0.075 1 NA NA NA NA NA LTS-036 chr2 89345703 89597177 251475 * character(0) NA 0 NA 0.606409093233601 100 0.38135389380893 2 NA NA -5.79306557795545 LTS-036 chr2 89597178 89890617 293440 * character(0) NA 0 NA 1.156 1 NA NA NA NA NA LTS-036 chr2 89890618 91937761 2047144 * LOC654342 0.393267690293209 13 0.112038340507122 1.20157008549392 209 1.51646613970165 4 2 2 -6.73677954247233 LTS-036 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.15585560588696 14 0.180483477676727 4 NA NA -5.76574051699907 LTS-036 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.492 1 NA 0.754 1 NA NA NA NA NA LTS-036 chr2 95537246 96012907 475662 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, MRPS5, ZNF2, ZNF514) 0.123827062747906 9 0.221549342384741 1.0383734264493 463 0.298219186328518 3 3 0 -6.75027401606393 LTS-036 chr2 96012908 96080548 67641 * c(KCNIP3, FAHD2A) 0.492 1 NA 1.03782665924268 143 0.248530403907656 3 3 0 -5.76703795941294 LTS-036 chr2 96080549 96551793 471245 * c(TRIM43, TRIM43B) 0.496 1 NA 0.96138408912399 163 0.165773556620254 3 3 0 -5.76621728039259 LTS-036 chr2 96551794 96555545 3752 * character(0) NA 0 NA 0.791 1 NA NA NA NA NA LTS-036 chr2 96555546 96619776 64231 * character(0) 0.379228978077265 29 0.0619734370238712 0.709705887376664 77 0.213147984335408 2 1 1 -6.7379724683033 LTS-036 chr2 96619777 96628099 8323 * character(0) NA 0 NA 1.113 1 NA NA NA NA NA LTS-036 chr2 96628100 97589143 961044 * c(MIR3127, ARID5A, GPAT2, ITPRIPL1, ADRA2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, FAHD2CP, LMAN2L, FER1L5, NEURL3, CIAO1) 0.393317172052226 15 0.190651439618408 0.97752641432576 1971 0.213812490309847 3 2 1 -6.76039359251613 LTS-036 chr2 97589144 97613616 24473 * FAM178B 0 1 NA 0.991237622855337 9 0.237989729003399 3 3 0 -5.76448794919704 LTS-036 chr2 97613617 98929209 1315593 * c(ACTR1B, COX5B, FAHD2B, VWA3B, TMEM131, ANKRD36, FAM178B, ANKRD36B, LINC01125, ZAP70) 0.0327932960648531 21 0.117541016144112 0.960995136350541 835 0.523448194968426 3 3 0 -6.95328767715055 LTS-036 chr2 98929210 99232873 303664 * c(CNGA3, VWA3B, UNC50, INPP4A, COA5) 0.484 1 NA 0.962209263558311 417 0.230745422834568 3 3 0 -5.76493599850193 LTS-036 chr2 99232874 101185534 1952661 * c(TXNDC9, MGAT4A, NMS, LYG1, MITD1, C2orf15, LONRF2, LYG2, UNC50, KIAA1211L, AFF3, MRPL30, REV1, LIPT1, PDCL3, TSGA10, CHST10, EIF5B) 0.398880885615224 32 0.113001494245045 0.969177346353321 1658 0.209382525222743 3 2 1 -6.83266194332844 LTS-036 chr2 101185535 101580575 395041 * c(NPAS2, PDCL3) 0.014 1 NA 0.890549678206568 69 0.259886135635034 3 3 0 -5.79257080228981 LTS-036 chr2 101580576 102018908 438333 * c(MIR5696, TBC1D8, CREG2, RNF149, NPAS2, CNOT11, RPL31, SNORD89, RFX8) 0.199810621390695 17 0.221480230826724 0.986201692096632 576 0.223438887423482 3 3 0 -6.841253047824 LTS-036 chr2 102018909 102068872 49964 * RFX8 0.459 1 NA 0.946764863520762 59 0.149832327872676 3 3 0 -5.76550051940135 LTS-036 chr2 102068873 103136309 1067437 * c(MIR4772, IL1R1, SLC9A4, RFX8, IL1R2, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4) 0.450260095675762 19 0.0311886356571115 0.96038503304904 834 0.229019177736412 4 2 2 -9.30362435328267 LTS-036 chr2 103136310 103141447 5138 * SLC9A4 0.011 1 NA 1.16346675968462 5 0.361973065296301 4 4 0 -5.76448739393619 LTS-036 chr2 103141448 103432318 290871 * c(TMEM182, SLC9A4, SLC9A2, MFSD9) 0.152095847794355 9 0.216018774904199 0.977098982816594 344 0.23941500688143 3 3 0 -6.76114726161736 LTS-036 chr2 103432319 105473698 2041380 * c(LOC100287010, LINC01158, TMEM182, LINC01102, LINC01114, POU3F3) 0.466 1 NA 0.978283662849795 79 0.255540119507098 3 3 0 -5.76473638460197 LTS-036 chr2 105473699 106509907 1036209 * c(GPR45, FHL2, LOC285000, MRPS9, C2orf49, NCK2, TGFBRAP1) 0.443959425028882 22 0.102287314976955 0.985907117820227 574 0.231633961927168 3 2 1 -7.17860568165173 LTS-036 chr2 106509908 106510184 277 * NCK2 0 1 NA 1.04088992375527 7 0.160606143510556 3 3 0 -5.76443827184454 LTS-036 chr2 106510185 108877062 2366878 * c(PLGLA, RGPD4, SULT1C3, SLC5A7, RGPD3, RGPD4-AS1, UXS1, NCK2, C2orf40, ST6GAL2) 0.311591002490244 15 0.232711552499369 1.00292664974656 511 0.22627209070218 3 2 1 -6.77493598368348 LTS-036 chr2 108877063 108915136 38074 * c(SULT1C3, SULT1C2) 0.394 1 NA 0.931246406387361 27 0.160322031692946 3 3 0 -5.76621773196855 LTS-036 chr2 108915137 109429146 514010 * c(SULT1C2P1, CCDC138, SULT1C4, LIMS1, RANBP2, SULT1C2, GCC2) 0.461452907371026 17 0.0325516557815059 0.930248038117822 535 0.18709611456486 2 1 1 -9.5194001578847 LTS-036 chr2 109429147 109512606 83460 * c(EDAR, CCDC138) 0 1 NA 0.999064388092059 69 0.281313980124468 3 3 0 -5.76481162753649 LTS-036 chr2 109512607 112776979 3264373 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, MERTK, EDAR, LINC01106, SEPT10, LINC00116, SH3RF3, NPHP1, MIR4435-2HG, ACOXL, ANAPC1, SOWAHC, BUB1, MALL) 0.115174279572741 26 0.193549627903384 1.0063703625869 1331 0.264097973876291 3 3 0 -6.7640812467117 LTS-036 chr2 112776980 112812842 35863 * c(MERTK, TMEM87B) 0.375 1 NA 1.0266541068767 61 0.305204166190616 3 3 0 -5.76504508745647 LTS-036 chr2 112812843 113888793 1075951 * c(FBLN7, TTL, CKAP2L, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, ZC3H6, FLJ42351, IL36G, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, IL1F10, TMEM87B) 0.448710014651908 55 0.0923899181171678 0.99508378717807 1501 0.220448564185564 3 2 1 -7.32655055351472 LTS-036 chr2 113888794 113890304 1511 * IL1RN 0.003 1 NA 1.38669064700581 3 0.299541316015003 5 5 0 -5.76446224272787 LTS-036 chr2 113890305 114492135 601831 * c(MIR4782, RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL1RN, WASH2P, FAM138B, PAX8-AS1, PAX8, SLC35F5, DDX11L2) 0.218124746850685 9 0.211185345135499 1.01062208357137 452 0.256829825723797 3 3 0 -6.90708983832163 LTS-036 chr2 114492136 114493524 1389 * SLC35F5 0.409 1 NA 0.975943383165137 9 0.141788672953018 3 3 0 -5.76441026525308 LTS-036 chr2 114493525 116283668 1790144 * c(LOC100499194, ACTR3, DPP10-AS1, LINC01191, DPP10, SLC35F5) 0.349408183751945 13 0.173057793814668 0.99896982209837 310 0.213362467116274 3 2 1 -6.74805878382113 LTS-036 chr2 116283669 116447277 163609 * DPP10 0 1 NA 1.38892394796784 2 0.547300648638388 5 5 0 -5.76602598934563 LTS-036 chr2 116447278 116602671 155394 * DPP10 0.181873332832853 10 0.231141827552792 1.06520506979039 156 0.308376836154928 3 3 0 -6.80606597921642 LTS-036 chr2 116602672 118572471 1969800 * DDX18 0.446 1 NA 0.927153110604252 21 0.253921144489874 3 3 0 -5.80900999548814 LTS-036 chr2 118572472 121708802 3136331 * c(C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, GLI2, INHBB, INSIG2, CCDC93, STEAP3, EPB41L5, PTPN4, RALB, SCTR, TMEM185B, TMEM177, LINC01101, MARCO, DDX18) 0.383151701226809 42 0.159503048296249 0.985474399875658 1749 0.240603750723949 3 2 1 -6.7592278341885 LTS-036 chr2 121708803 121976519 267717 * c(GLI2, TFCP2L1) 0 1 NA 1.10055391065262 203 0.212053749470478 4 4 0 -5.80960030672741 LTS-036 chr2 121976520 128610719 6634200 * c(RNU4ATAC, MIR4783, MAP3K2, CNTNAP5, ERCC3, CLASP1, NIFK-AS1, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, MYO7B, POLR2D, WDR33, IWS1, LIMS2, PROC, TSN, NIFK, SFT2D3) 0.113665878497135 20 0.213550554842839 0.985602915358436 2305 0.246409145875168 3 3 0 -6.7428083641063 LTS-036 chr2 128610720 128619847 9128 * c(POLR2D, AMMECR1L) 0.482 1 NA 0.887797939295706 17 0.200577878376748 3 3 0 -5.76558426840978 LTS-036 chr2 128619848 132287679 3667832 * c(RAB6C-AS1, CYP4F30P, FAR2P2, MIR4784, TUBA3E, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, MED15P9, GPR148, LOC389033, LINC01120, NOC2LP2, FAR2P1, LOC440910, POTEE, ARHGEF4, PLEKHB2, SMPD4, CFC1, UGGT1, POTEI, CFC1B, POTEJ, MZT2A, POTEF, SAP130, MZT2B, AMMECR1L, RAB6C, CCDC115, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.384799543741389 100 0.125984212575155 0.973739054582445 2169 0.438952145783375 3 2 1 -6.77192830838598 LTS-036 chr2 132287680 132290470 2791 * CCDC74A 0.280713689454346 3 0.174786536476164 0.496303232916265 40 0.35257354115571 4 3 1 -6.74588145382731 LTS-036 chr2 132290471 133402607 1112137 * c(MIR663B, LYPD1, GPR39, C2orf27A, C2orf27B, ANKRD30BL, CCDC74A) 0.332355918733988 13 0.0904091128830921 1.0623365286666 87 0.288077314090062 3 2 1 -6.82271642823629 LTS-036 chr2 133402608 133403433 826 * c(LYPD1, GPR39) 0.371 1 NA 1.11048629782219 17 0.329762202646267 4 4 0 -5.76445928861642 LTS-036 chr2 133403434 133971448 568015 * c(LYPD1, GPR39, NCKAP5) 0.0360377039969703 9 0.16 1.04417941636211 279 0.257390343731427 3 3 0 -6.86788334095287 LTS-036 chr2 133971449 135206934 1235486 * c(MIR3679, NCKAP5, MGAT5) 0.476 1 NA 0.992398907543852 117 0.173949477066663 3 3 0 -5.77277965274552 LTS-036 chr2 135206935 142889274 7682340 * c(CCNT2-AS1, LOC100507600, NXPH2, ACMSD, DARS, RAB3GAP1, UBXN4, R3HDM1, HNMT, SPOPL, LCT, MIR128-1, MCM6, MGAT5, LRP1B, YY1P2, CXCR4, MAP3K19, THSD7B, TMEM163, ZRANB3, CCNT2) 0.403795377782428 42 0.152646740200518 0.940825335295669 2599 0.219979569471487 3 2 1 -6.91337378312055 LTS-036 chr2 143642881 148602376 4959496 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.448600023125381 12 0.0687438702501517 0.819475198788917 467 0.213995141589322 2 1 1 -8.20177268115966 LTS-036 chr2 148602377 152236290 3633914 * c(MIR4773-1, MIR4773-2, LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, ORC4, MBD5, TNFAIP6, NMI, ACVR2A) 0.416082916621283 16 0.119324766917853 0.951038562894995 1206 0.204151705785117 3 2 1 -6.92829750523834 LTS-036 chr2 152236291 152311570 75280 * c(RIF1, TNFAIP6) 0 1 NA 0.941669318179165 112 0.174822200310385 3 3 0 -5.76611551947871 LTS-036 chr2 152311571 152976002 664432 * c(STAM2, ARL5A, NEB, RIF1, CACNB4) 0.0490874403624822 20 0.173771174400795 0.945004938496562 1368 0.230354674231715 3 3 0 -6.80200054473409 LTS-036 chr2 152976003 153004736 28734 * STAM2 0.475 1 NA 0.92127238690507 71 0.243712870772722 3 3 0 -5.76531611187632 LTS-036 chr2 153004737 154334499 1329763 * c(STAM2, FMNL2, ARL6IP6, PRPF40A, RPRM) 0.38080627112796 16 0.152333351568197 0.920384582031738 556 0.252069005115295 3 2 1 -6.79379719264115 LTS-036 chr2 154334500 155307617 973118 * c(LOC100144595, GALNT13, RPRM) 0 1 NA 0.959089480004263 95 0.156261910094791 3 3 0 -5.77025689933951 LTS-036 chr2 155307618 160112881 4805264 * c(LOC100144595, GALNT5, GALNT13, ACVR1C, CCDC148, WDSUB1, UPP2, GPD2, KCNJ3, NR4A2, CCDC148-AS1, ERMN, PKP4, TANC1, ACVR1, DAPL1, CYTIP) 0.250607794242076 27 0.218300630420907 0.911118283811441 1499 0.207319190866605 3 2 1 -7.14785854594438 LTS-036 chr2 160112882 160114437 1556 * WDSUB1 0.442 1 NA 0.946768522007839 7 0.0670756502550878 3 3 0 -5.76457944836823 LTS-036 chr2 160114438 160761082 646645 * c(LY75-CD302, WDSUB1, BAZ2B, LY75, MARCH7, CD302) 0.0379591908702957 9 0.163544676193116 0.926525326402457 635 0.243947584064861 3 3 0 -6.84928640986914 LTS-036 chr2 160761083 160802644 41562 * c(LY75-CD302, PLA2R1, LY75) 0.43 1 NA 0.938494329420022 99 0.203156201930962 3 3 0 -5.76525297926546 LTS-036 chr2 160802645 165539171 4736527 * c(TANK, MIR4785, PSMD14, TBR1, DPP4, FAP, PLA2R1, GCA, GCG, AHCTF1P1, GRB14, ITGB6, FIGN, SLC4A10, RBMS1, IFIH1, KCNH7) 0.309536256123979 22 0.211626646862671 0.903595281436015 1786 0.190190465288178 3 2 1 -7.1726002882992 LTS-036 chr2 165539172 165539174 3 * character(0) NA 0 NA 1.345 1 NA NA NA NA NA LTS-036 chr2 165539175 165542581 3407 * COBLL1 0.423 1 NA 1.31855823466748 68 0.440599007617594 4 4 0 -5.76445856222776 LTS-036 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 0.868 1 NA NA NA NA NA LTS-036 chr2 165544234 167162277 1618044 * c(SNORA70F, LOC100506124, TTC21B-AS1, SLC38A11, COBLL1, GALNT3, SCN1A, SCN2A, SCN3A, SCN9A, TTC21B, CSRNP3) 0.377489251196137 40 0.151341757503019 0.956970957885179 1656 0.432873068924458 3 2 1 -6.7508413108378 LTS-036 chr2 167162278 167168093 5816 * SCN9A 0 1 NA 1.14196127325374 13 0.391564498403847 4 4 0 -5.76454145268207 LTS-036 chr2 167168094 169814655 2646562 * c(MIR4774, CERS6-AS1, NOSTRIN, XIRP2, CERS6, STK39, SPC25, G6PC2, SCN7A, SCN9A, ABCB11, B3GALT1) 0.0166373337346505 37 0.124191517556688 0.961413141792344 1095 0.262418413103195 3 3 0 -7.0279226821654 LTS-036 chr2 169814656 169826877 12222 * ABCB11 0.476 1 NA 0.95530646353925 21 0.113276169056825 3 3 0 -5.76462958409793 LTS-036 chr2 169826878 170115672 288795 * c(DHRS9, LRP2, ABCB11) 0.331012572362234 10 0.19915234258114 0.986923018503796 495 0.231355947387765 3 2 1 -6.74062727497864 LTS-036 chr2 170115673 170129528 13856 * LRP2 0 1 NA 0.9994529032164 11 0.271188864078155 3 3 0 -5.7644840914018 LTS-036 chr2 170129529 170366300 236772 * c(KLHL41, BBS5, LRP2) 0.131100409511996 3 0.274241377865072 1.01908059778905 158 0.237245570613276 3 3 0 -6.74347096798413 LTS-036 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.857 1 NA NA NA NA NA LTS-036 chr2 170366321 171264179 897859 * c(PHOSPHO2-KLHL23, KLHL41, CCDC173, UBR3, MYO3B, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.203628602159982 7 0.250124921170355 0.877368199989767 973 0.221232276880626 3 3 0 -6.94275047950994 LTS-036 chr2 171264180 171300575 36396 * MYO3B 0.398 1 NA 0.851441981443563 7 0.0951520087118751 3 3 0 -5.80785400288322 LTS-036 chr2 171300576 173831934 2531359 * c(NA, RAPGEF4, MYO3B, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, ITGA6, SP5, LINC01124, PDK1, METTL8, CYBRD1, DCAF17, HAT1, SLC25A12, RAPGEF4-AS1, TLK1) 0.370779585449408 45 0.169700350886229 0.919869341113558 1888 0.202245844268962 3 2 1 -6.85979435760106 LTS-036 chr2 173831935 173861340 29406 * RAPGEF4 0 1 NA 0.98513671254797 28 0.188559128587149 3 3 0 -5.76447184182461 LTS-036 chr2 173861341 174094500 233160 * c(RAPGEF4, MLK7-AS1, ZAK) 0.15211307384076 9 0.220848049824107 0.932290547174015 281 0.21917273402759 3 3 0 -6.76555949436571 LTS-036 chr2 174094501 174128513 34013 * c(MLK7-AS1, ZAK) 0.498 1 NA 0.900938130258517 29 0.131230581486334 3 3 0 -5.77164646472629 LTS-036 chr2 174128514 182394308 8265795 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, HOXD-AS2, TTN-AS1, MIR4437, UBE2E3, MTX2, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, ZNF385B, GPR155, HNRNPA3, CCDC141, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA4, LINC01116, HAGLR, MIR10B, NFE2L2, DFNB59, PDE11A, FKBP7, ZAK, ATP5G3, CWC22, PLEKHA3, SP3, TTN, WIPF1, SCRN3, NA NA NA NA NA NA NA NA NA LTS-036 LNPK, CDCA7, AGPS, PRKRA, SESTD1, TTC30A, CIR1) 0.410839067049445 90 0.118144168050922 0.914580033551841 7143 0.206150844513228 3 2 1 -7.30812193476191 LTS-036 NA NA NA NA LTS-036 chr2 182394309 182399486 5178 * ITGA4 0.029 1 NA 0.777887585936894 19 0.224838018366387 2 2 0 -5.7648276879632 LTS-036 chr2 182399487 183644191 1244705 * c(PPP1R1C, ITGA4, CERKL, NEUROD1, PDE1A, DNAJC10, SSFA2) 0.00112363667106937 11 0.00271360210119987 0.911036623795557 613 0.240696696532619 20 20 0 -22.0283333436202 LTS-036 chr2 183644192 183789649 145458 * c(NCKAP1, FRZB, DNAJC10) 0.418 1 NA 0.927452353697519 84 0.179954612751667 3 3 0 -5.77092340034604 LTS-036 chr2 183789650 189866199 6076550 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, NCKAP1, DIRC1, COL3A1, NUP35, DUSP19, ZSWIM2, FAM171B, ITGAV, FSIP2, GULP1, ZC3H15, MIR561, TFPI, ZNF804A) 0.425064837557977 49 0.114178338695266 0.946802569480376 2128 0.519980765257668 3 2 1 -6.97631553821689 LTS-036 chr2 189866200 189897394 31195 * c(COL3A1, COL5A2) 0 1 NA 0.937512753508064 123 0.203182275109238 3 3 0 -5.76507852992757 LTS-036 chr2 189897395 190742374 844980 * c(MIR3129, OSGEPL1-AS1, COL5A2, ANKAR, SLC40A1, PMS1, ASNSD1, OSGEPL1, WDR75, ORMDL1) 0.143531186478747 13 0.205880877930506 0.916377893597785 933 0.208733130539475 3 3 0 -6.79697709749981 LTS-036 chr2 190742375 191064753 322379 * c(MSTN, C2orf88) 0.379 1 NA 0.868140197583124 73 0.161314694760937 3 3 0 -5.86159337776496 LTS-036 chr2 191064754 193043892 1979139 * c(NEMP2, TMEFF2, HIBCH, GLS, INPP1, MYO1B, NAB1, MFSD6, NABP1, STAT1, STAT4, C2orf88, SDPR) 0.351343646947953 32 0.152931802084163 0.90074570861849 1567 0.20783499851577 3 2 1 -6.89748342496909 LTS-036 chr2 193043893 198669447 5625555 * c(LOC100130452, HSPE1-MOB4, RFTN2, SF3B1, TMEFF2, MOB4, CCDC150, HSPD1, HSPE1, C2orf66, PLCL1, DNAH7, SLC39A10, HECW2, PCGEM1, BOLL, PGAP1, COQ10B, ANKRD44, STK17B, MARS2, GTF3C3) 0.341641778794907 32 0.196967892831425 0.838005137560017 2292 0.179394982880312 3 2 1 -8.48649838370544 LTS-036 chr2 198669448 198669546 99 * PLCL1 NA 0 NA 0.836 1 NA NA NA NA NA LTS-036 chr2 198669547 202974360 4304814 * c(LOC100507140, KIAA2012, CLK1, TYW5, KCTD18, ALS2CR12, SATB2-AS1, SGO2, ALS2CR11, C2orf69, SATB2, SPATS2L, FAM126B, AOX1, AOX2P, FTCDNL1, NDUFB3, ORC2, PLCL1, PPIL3, STRADB, ALS2, MPP4, NIF3L1, CDK15, TMEM237, CFLAR-AS1, TRAK2, C2orf47, FZD7, CASP8, CASP10, CFLAR, BZW1) 0.371710907801188 73 0.159374993359596 0.90310798837375 3142 0.271434898276068 3 2 1 -6.93651338887165 LTS-036 chr2 202974361 203052947 78587 * KIAA2012 0 1 NA 0.886049511571896 49 0.319636404563762 3 3 0 -5.76855981350121 LTS-036 chr2 203052948 204821494 1768547 * c(SNORD11B, KIAA2012, ABI2, ICA1L, CTLA4, FAM117B, ICOS, NOP58, WDR12, CYP20A1, RAPH1, NBEAL1, BMPR2, SNORD11, SNORD70, SUMO1, CARF, CD28) 0.120848093183918 9 0.223078523793255 0.919587145310927 1821 0.225384727370229 3 3 0 -6.80472520422908 LTS-036 chr2 204821495 204824324 2830 * ICOS 0.481 1 NA 1.05205876148405 7 0.272526276583693 3 3 0 -5.76454519597861 LTS-036 chr2 204824325 206364800 1540476 * c(PARD3B, ICOS) 0.340357495107104 9 0.155450778204692 0.909682951065902 177 0.195787292995774 3 2 1 -6.84792375043336 LTS-036 chr2 206364801 206417969 53169 * PARD3B NA 0 NA 1.28 1 NA NA NA NA NA LTS-036 chr2 206417970 211543147 5125178 * c(GCSHP3, MIR3130-1, MIR3130-2, MIR2355, LOC100507443, IDH1-AS1, MIR4775, LANCL1, PARD3B, CPO, MDH1B, CPS1, CREB1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, METTL21A, CCNYL1, EEF1B2, PIKFYVE, LOC200726, FASTKD2, SNORD51, GPR1, UNC80, CPS1-IT1, ACADL, IDH1, PLEKHM3, C2orf80, DYTN, MAP2, MYL1, NDUFS1, INO80D, PTH2R, ZDBF2, RPE, SNORA41, FZD5, KLF7, ADAM23, NRP2) 0.391361080088373 84 0.149476625177548 0.953975299405098 4373 0.259435688485113 3 2 1 -6.79313288968787 LTS-036 chr2 211543148 212241725 698578 * c(CPS1, ERBB4) 0 1 NA 1.08055760830831 37 0.213695922861077 3 3 0 -5.86134648694297 LTS-036 chr2 212241726 213870535 1628810 * c(MIR548F2, MIR4776-1, MIR4776-2, ERBB4, IKZF2) 0.00353624794753468 9 0.00529150262212918 0.979628465271531 303 0.290400132407852 20 20 0 -17.6003674800604 LTS-036 chr2 213870536 213870678 143 * IKZF2 0.33 1 NA 0.956784601639118 5 0.0730499828884306 3 3 0 -5.76441533684317 LTS-036 chr2 213870679 214182561 311883 * c(LOC100130451, IKZF2, SPAG16) 0.441324865381809 10 0.0430979504539756 0.875039389892722 171 0.194526855443715 2 1 1 -7.811448872244 LTS-036 chr2 214182562 214229796 47235 * SPAG16 0 1 NA 1.02884230681244 33 0.327544187974321 3 3 0 -5.76519639425435 LTS-036 chr2 214229797 215632256 1402460 * c(VWC2L-IT1, VWC2L, BARD1, SPAG16) 0.159544144243458 10 0.208779229490547 0.987231352740007 270 0.409550023506404 3 3 0 -6.77422616627586 LTS-036 chr2 215632257 215634055 1799 * BARD1 0.5 1 NA 1.09692368718279 9 1.51019456068121 4 4 0 -5.76441652190831 LTS-036 chr2 215634056 219892233 4258178 * c(LOC100129175, ARPC2, AAMP, CRYBA2, PKI55, LINC00608, GPBAR1, CYP27A1, FN1, CFAP65, PNKD, ABCA12, STK36, RUFY4, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, CATIP, MIR26B, ATIC, MIR375, SMARCAL1, PRKAG3, FEV, MREG, PECR, MARCH4, USP37, BARD1, CTDSP1, RPL37A, BCS1L, TMBIM1, RNF25, LINC00607, SLC11A1, TNP1, TNS1, DIRC3, VIL1, WNT6, XRCC5, ZNF142, WNT10A, PLCD4, CDK5R2, CNOT9, TMEM169, TTLL4) 0.397466902361864 100 0.146802555505789 0.938851988367198 4411 0.217469599630231 3 2 1 -6.86146032329706 LTS-036 chr2 219892234 219942981 50748 * c(MIR3131, CFAP65, IHH, NHEJ1) 0 1 NA 0.936527365470073 185 0.214450970486626 3 3 0 -5.76544035504187 LTS-036 chr2 219942982 220313516 370535 * c(ABCB6, SPEG, ZFAND2B, SLC23A3, DES, DNPEP, CNPPD1, DNAJB2, RESP18, MIR153-1, ANKZF1, PTPRN, TUBA4A, ATG9A, FAM134A, GLB1L, NHEJ1, TUBA4B, STK16) 0.0553906528566644 21 0.162759375415717 0.924971906543222 1367 0.221171156139197 3 3 0 -6.80100389562659 LTS-036 chr2 220313517 220315970 2454 * SPEG 0.48 1 NA 0.925491568002592 13 0.133892130329241 3 3 0 -5.76462621969875 LTS-036 chr2 220315971 220427395 111425 * c(MIR3132, SPEG, TMEM198, OBSL1, GMPPA, ASIC4, CHPF) 0.420538920688999 31 0.117182790765594 0.98126032187971 691 0.217583507486993 4 2 2 -6.86057551815412 LTS-036 chr2 220427396 220428381 986 * OBSL1 0 1 NA 1.10950419628768 9 0.193899745000119 4 4 0 -5.76458277544103 LTS-036 chr2 220428382 224862842 4434461 * c(MIR4268, FARSB, STK11IP, MOGAT1, AP1S3, SGPP2, CCDC140, EPHA4, ACSL3, OBSL1, KCNE4, INHA, PAX3, SERPINE2, WDFY1, SLC4A3, MRPL44, SCG2) 0.295567626629651 27 0.198477926176911 0.955859786551828 1437 0.264019642569944 3 2 1 -6.79597147610351 LTS-036 chr2 224862843 225264598 401756 * c(SERPINE2, FAM124B) 0 1 NA 0.975727108258558 63 0.252516311265623 3 3 0 -5.76441926355625 LTS-036 chr2 225264599 225811592 546994 * c(DOCK10, FAM124B, CUL3) 0.0592215143866169 14 0.19258303475313 0.904985720320437 494 0.231806514774411 3 3 0 -6.8001046686026 LTS-036 chr2 225811593 225848579 36987 * DOCK10 0.406 1 NA 0.925005250855571 9 0.0897315440633894 3 3 0 -5.77180479157375 LTS-036 chr2 225848580 228474873 2626294 * c(MIR4439, MIR5702, MIR5703, COL4A3, COL4A4, AGFG1, IRS1, DOCK10, C2orf83, MFF, NYAP2, LOC646736, LOC654841, TM4SF20, RHBDD1) 0.399001292979188 31 0.127970267043997 0.919301619039208 1330 0.212147589620106 3 2 1 -6.92641920477642 LTS-036 chr2 228474874 228475127 254 * C2orf83 0 1 NA 1.59179460885962 5 1.35264008516678 5 5 0 -5.76441049721002 LTS-036 chr2 228475128 231036866 2561739 * c(FBXO36, SLC16A14, DAW1, SP110, PID1, C2orf83, CCL20, SPHKAP, SLC19A3, DNER, TRIP12) 0.108356202167812 30 0.202143672589117 0.948768029172879 1026 0.509829089643385 3 3 0 -6.73731058643571 LTS-036 chr2 231036867 231037616 750 * SP110 0.5 1 NA 0.873687088027442 3 0.11220962525559 3 3 0 -5.76483343759379 LTS-036 chr2 231037617 232227392 1189776 * c(SP140, SPATA3, LOC151475, LOC151484, C2orf72, HTR2B, SP110, SPATA3-AS1, CAB39, PSMD1, SP100, ARMC9, ITM2C, GPR55, SP140L) 0.379976437380184 41 0.139540181292422 0.917387206798251 1228 0.213352038943349 3 2 1 -6.81212179145212 LTS-036 chr2 232227393 232264384 36992 * c(MIR4777, ARMC9, B3GNT7) 0 1 NA 0.938069476036947 75 0.266948741579035 3 3 0 -5.76485523395153 LTS-036 chr2 232264385 233245026 980642 * c(MIR1471, NMUR1, DIS3L2, LINC00471, C2orf57, ALPP, SNORD82, NCL, NPPC, PDE6D, PTMA, SNORD20, COPS7B, SNORA75, B3GNT7) 0.157300835534555 9 0.238219961380234 0.934927007293699 677 0.255750380413794 3 3 0 -6.7767458184309 LTS-036 chr2 233245027 233245532 506 * ALPP 0.434 1 NA 1.07918734630748 13 0.376321262098878 3 3 0 -5.76443254086816 LTS-036 chr2 233245533 234235749 990217 * c(CHRND, CHRNG, TIGD1, ALPI, ALPP, ALPPL2, NGEF, GIGYF2, ECEL1P2, INPP5D, KCNJ13, C2orf82, NEU2, ATG16L1, SAG, PRSS56, SCARNA6, SCARNA5, EFHD1, ECEL1, EIF4E2) 0.331539924589586 63 0.194866204575375 0.943068604275472 1537 0.238404918906445 3 2 1 -6.75105598768153 LTS-036 chr2 234235750 234235820 71 * SAG 0 1 NA 3.039 1 NA NA NA NA NA LTS-036 chr2 234235821 234638249 402429 * c(UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A3, USP40, SAG, DGKD) 0.0272738573192401 30 0.123507275601224 0.922782416246369 694 0.292533829660175 3 3 0 -6.97139612800851 LTS-036 chr2 234638250 234681416 43167 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3) 0.465 1 NA 0.859296932254522 85 0.115313284149748 3 3 0 -5.79493896297967 LTS-036 chr2 234681417 238330447 3649031 * c(ARL4C, COPS8, AGAP1, COL6A3, MSL3P1, SH3BP4, GBX2, ASB18, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, HJURP, ACKR3, SPP2, TRPM8, IQCA1) 0.380375481747248 33 0.153929994418951 0.946928560343366 1702 0.230299668894787 3 2 1 -6.78560026555921 LTS-036 chr2 238330448 238462324 131877 * MLPH 0 1 NA 0.995475619731299 91 0.214239321636545 3 3 0 -5.76521372086856 LTS-036 chr2 238462325 238683166 220842 * c(PRLH, RAB17, MLPH, LRRFIP1) 7.64543485252607e-05 14 0.00183374953650638 0.952818909483491 320 0.293416228889582 20 20 0 -19.2980763037122 LTS-036 chr2 238683167 238730522 47356 * c(RBM44, LRRFIP1) 0.44 1 NA 0.938767076255041 75 0.187817692898634 3 3 0 -5.76551627925652 LTS-036 chr2 238730523 241451350 2720828 * c(PP14571, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, TWIST2, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, TRAF3IP1, GPC1, ESPNL, RBM44, KLHL30, OR6B2, FLJ43879, MIR149, NDUFA10, ANKMY1, SCLY, ASB1, HES6, LOC643387, PRR21, ILKAP, MGC16025, PER2, HDAC4) 0.437396570761525 119 0.093403566960994 0.93068808821125 2186 0.224171659833103 3 2 1 -7.25769781226739 LTS-036 chr2 241451351 241463453 12103 * ANKMY1 0.002 1 NA 1.0094518834405 61 0.211458441963417 3 3 0 -5.76461516907048 LTS-036 chr2 241463454 241826050 362597 * c(CAPN10, AGXT, DUSP28, GPR35, AQP12A, ANKMY1, KIF1A, RNPEPL1, AQP12B, C2orf54) 0.292562445173847 34 0.193701189009995 0.973050682570787 856 0.297064855762621 3 2 1 -6.7901622839929 LTS-036 chr2 241826051 241826138 88 * C2orf54 0.429 1 NA 1.05335439833043 3 0.140926694892534 3 3 0 -5.76442616902761 LTS-036 chr2 241826139 241905779 79641 * c(LOC200772, C2orf54) 0.439170488737361 19 0.0556377695770488 1.10040010852806 204 1.14685776928661 4 2 2 -7.25760281329472 LTS-036 chr2 241905780 242011084 105305 * c(LOC200772, SNED1) 0 1 NA 1.02265659083983 205 0.195490679906171 3 3 0 -5.76830133633504 LTS-036 chr2 242011085 242572846 561762 * c(BOK-AS1, STK25, MTERF4, PASK, SNED1, HDLBP, SEPT2, ANO7, THAP4, PPP1R7, BOK, FARP2) 0.29015765367491 26 0.225800674523759 0.958259661129692 1176 0.221911112104263 3 2 1 -6.7804579332147 LTS-036 chr2 242572847 242605962 33116 * c(ATG4B, THAP4) 0.5 1 NA 0.938014941120731 79 0.229788927039443 3 3 0 -5.76494953476722 LTS-036 chr2 242605963 242758475 152513 * c(NEU4, DTYMK, ATG4B, GAL3ST2, D2HGDH, ING5) 0.440994881409063 47 0.0786188595019045 0.916042880130847 493 0.185773503792453 2 1 1 -7.18097341675594 LTS-036 chr2 242758476 242792321 33846 * c(NEU4, PDCD1) 0 1 NA 0.933519387852394 11 0.135598136216744 3 3 0 -5.76642006955193 LTS-036 chr2 242792322 243037004 244683 * c(RTP5, PDCD1, LOC728323) 0.0940231922960915 9 0.185367203140146 0.94564939599034 143 0.276735386863623 3 3 0 -6.73692490957986 LTS-036 chr2 243037005 243037218 214 * LOC728323 NA 0 NA 0.762552828056342 5 0.0562298852924315 2 NA NA -5.76456816021456 LTS-036 chr3 239351 418089 178739 * CHL1 0.474 1 NA 1.01445201050192 67 0.145649780072258 3 3 0 -5.77268042696457 LTS-036 chr3 418090 14528028 14109939 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, CHL1, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, CNTN6, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, TPRXL, IL5RA, IRAK2, ITPR1, LHFPL4, LOC401052, THUMPD3-AS1, NA NA NA NA NA NA NA NA NA LTS-036 ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, SETMAR, MTMR14, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1) 0.375793920443283 184 0.131407451237267 1.0799604222211 7979 0.257610251552101 3 2 1 -7.86958370938579 LTS-036 NA NA NA NA LTS-036 chr3 14528029 14530133 2105 * SLC6A6 0 1 NA 1.27362037840807 49 0.323003210478769 4 4 0 -5.76442343172176 LTS-036 chr3 14530134 15133088 602955 * c(FGD5-AS1, FGD5, CCDC174, RBSN, MRPS25, SLC6A6, NR2C2, GRIP2, C3orf20) 0.141494662779957 12 0.199613471185659 1.0993905041265 824 0.280125467637587 3 3 0 -6.8193745351039 LTS-036 chr3 15133089 15216867 83779 * c(COL6A4P1, RBSN) NA 0 NA 1.0823782898013 32 0.286345655942987 3 NA NA -5.77119839467746 LTS-036 chr3 15216868 15219123 2256 * COL6A4P1 NA 0 NA 1.034 1 NA NA NA NA NA LTS-036 chr3 15219124 15247796 28673 * c(CAPN7, COL6A4P1) 0.394 1 NA 0.920127997775464 21 0.162448599929478 3 3 0 -5.76653602962453 LTS-036 chr3 15247797 17275173 2027377 * c(MIR4270, MIR3714, SH3BP5-AS1, GALNT15, METTL6, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, DPH3, BTD, MIR563, COLQ, EAF1, OXNAD1, SH3BP5, TBC1D5) 0.395798438623141 51 0.0981165373520732 1.00602372293524 1605 0.249732562204943 3 2 1 -6.8671131179806 LTS-036 chr3 17275174 18055231 780058 * c(LOC339862, TBC1D5) 0 1 NA 1.0003489884659 83 0.293154679108222 3 3 0 -5.76822507120059 LTS-036 chr3 18055232 25639591 7584360 * c(MIR4791, MIR548AC, MIR4792, SGO1-AS1, KCNH8, SGO1, PP2D1, EFHB, LINC00691, NKIRAS1, LOC339862, VENTXP7, RAB5A, RARB, RPL15, SATB1, THRB-AS1, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, KAT2B, NR1D2) 0.284734922763854 30 0.208953300067731 1.00356798606496 1474 0.274378680055391 3 2 1 -6.84850466970488 LTS-036 chr3 25639592 28579634 2940043 * c(MIR4442, LRRC3B, ZCWPW2, CMC1, NEK10, LINC00692, OXSM, NGLY1, AZI2, TOP2B, EOMES, SLC4A7) 0.236812696488483 9 0.161625682090165 0.877640428395052 1132 0.207514112027363 3 2 1 -7.4424211195617 LTS-036 chr3 29322426 38355225 9032800 * c(PDCD6IP, OSBPL10-AS1, CTDSPL, CRTAP, ARPP21, CMTM7, OSBPL10, CCR4, TRIM71, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, GOLGA4, ACAA1, C3orf35, GADL1, ZNF860, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, DYNC1LI1, PLCD1, CMTM6, TMPPE, STAC, TGFBR2, UBP1, DCLK3, LRRFIP2, SLC22A14, SLC22A13, EPM2AIP1, TRANK1, DLEC1, OXSR1) 0.272619186366622 89 0.134992768315367 0.960441513613943 4864 0.309218830855134 3 2 1 -6.94814177770801 LTS-036 chr3 38355226 38566075 210850 * c(ACVR2B-AS1, ACVR2B, SLC22A14, EXOG, XYLB) 0 1 NA 0.946366994391734 301 0.235830535144954 3 3 0 -5.76632234862714 LTS-036 chr3 38566076 38798688 232613 * c(SCN5A, SCN10A, EXOG) 0.141093595847927 9 0.170744692450454 0.973100523925322 412 0.233836228638491 3 3 0 -6.75936541566473 LTS-036 chr3 38798689 38802043 3355 * SCN10A NA 0 NA 1.239 1 NA NA NA NA NA LTS-036 chr3 38802044 39438671 636628 * c(SCN11A, CCR8, CX3CR1, XIRP1, TTC21A, SLC25A38, WDR48, SCN10A, CSRNP1, GORASP1) 0.000646373188591876 13 0.00221301511459725 1.09181799307193 1014 0.513387398961796 20 20 0 -17.67395955298 LTS-036 chr3 39438672 39448246 9575 * c(RPSA, SLC25A38) NA 0 NA 0.848 1 NA NA NA NA NA LTS-036 chr3 39448247 39555580 107334 * c(RPSA, MOBP, SNORA6, SNORA62) 0.000691070738219688 4 0.00330403793359983 0.890265924017954 82 0.215850920762404 20 20 0 -15.7978307761394 LTS-036 chr3 39555581 40082986 527406 * c(MYRIP, MOBP) 0.35 1 NA 0.900719640328707 45 0.167403199829428 3 3 0 -5.83308638517982 LTS-036 chr3 40082987 42947920 2864934 * c(CCDC13-AS1, EIF1B, ACKR2, LYZL4, KLHL40, CTNNB1, CCDC13, CYP8B1, TRAK1, ZNF620, MYRIP, HIGD1A, ENTPD3-AS1, ZNF619, ZNF621, ZNF662, EIF1B-AS1, NKTR, SS18L2, ULK4, HHATL, VIPR1, CCK, RPL14, SEC22C, ZBTB47, ENTPD3) 0.245870767991309 82 0.143645262565086 0.981365125862727 2125 0.233232939417325 3 2 1 -7.0490151285384 LTS-036 chr3 42947921 44906746 1958826 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, TMEM42, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, MIR138-1, ABHD5, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, MIR564, FAM198A, ZNF35, POMGNT2, ZNF502) 0.297010940004402 30 0.154319079056737 0.919474263387546 1941 0.390787179255216 3 2 1 -6.83556796265128 LTS-036 chr3 44906747 44929287 22541 * c(TMEM42, TGM4) 0 1 NA 0.953198139730588 21 0.236060020616227 3 3 0 -5.76452553606904 LTS-036 chr3 44929288 45124351 195064 * c(EXOSC7, ZDHHC3, CDCP1, TGM4, CLEC3B) 0.0661855500954565 9 0.153709954134402 0.962416859847081 331 0.230051634102433 3 3 0 -6.77185367437234 LTS-036 chr3 45124352 45124498 147 * CDCP1 0.327 1 NA 0.845663520050975 5 0.109147606478566 3 3 0 -5.76455737385791 LTS-036 chr3 45124499 46059139 934641 * c(LARS2-AS1, CXCR6, CCR9, SACM1L, LARS2, TMEM158, LZTFL1, SLC6A20, LIMD1-AS1, CDCP1, FYCO1, LIMD1) 0.321513353422378 44 0.10685360507511 0.907904711169226 1295 0.210657682328661 3 2 1 -6.84558898875291 LTS-036 chr3 46059140 46061218 2079 * character(0) 0 1 NA 0.944041304565866 41 0.239701587853548 3 3 0 -5.76443161022372 LTS-036 chr3 46061219 46482980 421762 * c(CCR1, CCR3, CCR5, XCR1, LTF, CCR2, CCRL2) 0.123094991987708 18 0.178058419215702 0.915866655517367 380 0.232835880445021 3 3 0 -6.75680430292659 LTS-036 chr3 46482981 46484964 1984 * LTF 0.402 1 NA 0.791549555942987 3 0.233530155083521 2 2 0 -5.76462763145482 LTS-036 chr3 46484965 46620614 135650 * c(LTF, TDGF1, LRRC2, RTP3, LRRC2-AS1) 0.370130663975722 9 0.0501284461270356 0.919098260746095 242 0.189713215030847 3 2 1 -6.81303622405294 LTS-036 chr3 46620615 46622629 2015 * c(TDGF1, LRRC2) 0 1 NA 0.940691771782454 17 0.393700038847135 3 3 0 -5.76441969224883 LTS-036 chr3 46622630 46716087 93458 * c(LOC100132146, ALS2CL, TDGF1) 0.165244965921182 5 0.193539401673148 0.913052805631591 107 0.261125919625368 2 2 0 -6.7893815820731 LTS-036 chr3 46716088 46852679 136592 * c(PRSS46, ALS2CL, TMIE, PRSS50, PRSS45) 0.000255325720234061 13 0.00432346015273735 1.07560214449815 275 0.403194259058201 20 20 0 -12.8879758256808 LTS-036 chr3 46852680 46933960 81281 * c(PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.353 1 NA 0.988900480239434 121 0.250962157870854 3 3 0 -5.76458353238846 LTS-036 chr3 46933961 47870611 936651 * c(NRADDP, CSPG5, CCDC12, DHX30, SCAP, NBEAL2, KLHL18, PTPN23, KIF9-AS1, SETD2, ELP6, PTH1R, KIF9, SMARCC1) 0.327557767927907 20 0.13723505574858 0.973543078982597 1601 0.221920414652571 3 2 1 -6.75297673943902 LTS-036 chr3 47870612 47882314 11703 * DHX30 NA 0 NA 1.198 1 NA NA NA NA NA LTS-036 chr3 47882315 48369913 487599 * c(MIR1226, MIR4443, NME6, DHX30, MAP4, ZNF589, SPINK8, CAMP, CDC25A) 0.294009551606532 4 0.20360173542155 1.15610680530227 791 0.226310012859922 4 3 1 -6.75630532985435 LTS-036 chr3 48369914 48413708 43795 * character(0) NA 0 NA 0.861 1 NA NA NA NA NA LTS-036 chr3 48413709 56787451 8373743 * c(SNORD19B, LINC00696, BSN-AS2, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, RBM5-AS1, MIR5193, CACNA2D3-AS1, RBM6, RBM5, TRAIP, ARIH2, NPRL2, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, DAG1, DOCK3, DUSP7, CELSR3, KLHDC8B, ALAS1, LAMB2P1, RAD54L2, STAB1, FAM208A, NAT6, ABHD14A, NA NA NA NA NA NA NA NA NA LTS-036 POC1A, NDUFAF3, DNAH1, ERC2, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, GPX1, SPCS1, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 PFKFB4, PLXNB1, TLR9, P4HTM, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, BAP1, HYAL3, ATRIP, NICN1, MON1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ABHD14B, HYAL2, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1) 0.275120173878325 255 0.129518022814395 0.933721241169925 13944 0.201908738460969 3 2 1 -7.15476446055585 LTS-036 NA NA NA NA LTS-036 chr3 56787452 57125380 337929 * c(ARHGEF3-AS1, SPATA12, ARHGEF3, IL17RD) 0 1 NA 0.965220807251292 147 0.234218856107158 3 3 0 -5.76472786842397 LTS-036 chr3 57125381 58413518 1288138 * c(RPP14, ASB14, DNASE1L3, DNAH12, PDE12, DENND6A, FLNB, APPL1, ARF4, PDHB, IL17RD, PXK, ABHD6, SLMAP, HESX1) 0.00820446651274223 33 0.0516820114065842 0.930625917625684 1997 0.240054834369763 3 3 0 -8.36189234576964 LTS-036 chr3 58413519 58512237 98719 * c(KCTD6, PDHB, ACOX2) 0.298 1 NA 0.877213590833463 123 0.205562475565919 3 3 0 -5.77978881038972 LTS-036 chr3 58512238 59033091 520854 * c(FAM107A, FAM3D, C3orf67, ACOX2) 0.160417670782753 14 0.163399076624558 0.935280750862874 384 0.248910046967677 3 3 0 -6.80904554781931 LTS-036 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 2.063 1 NA NA NA NA NA LTS-036 chr3 59035205 64619512 5584308 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, PRICKLE2-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, THOC7, CADPS, PSMD6) 0.23048919596442 25 0.174832796313125 1.00695866029139 1534 0.353630523370097 3 2 1 -7.04153457358474 LTS-036 chr3 64619513 73024724 8405212 * c(MIR1284, MIR3136, MIR4272, ADAMTS9-AS2, MAGI1-AS1, ARL6IP5, SLC25A26, FAM19A4, LINC00870, FRMD4B, RYBP, LRIG1, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, SHQ1, LMOD3, ADAMTS9, PROK2, MIR548A2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3, MAGI1) 0.18198127863575 52 0.173283680090833 0.916604841743915 2462 0.232461045303312 3 3 0 -7.1765510141389 LTS-036 chr3 73024725 73046508 21784 * PPP4R2 0.408 1 NA 0.880078392072394 33 0.240723215886351 3 3 0 -5.76673825622171 LTS-036 chr3 73046509 74418458 1371950 * c(PPP4R2, PDZRN3, CNTN3, EBLN2) 0.282846220469374 16 0.129183590289169 0.936940972567456 434 0.24129254540747 3 2 1 -6.92457711044846 LTS-036 chr3 74418459 75785498 1367040 * c(ZNF717, MIR1324, CNTN3, FAM86DP) 0.330639567512161 86 0.0841706624091596 1.21424660566885 223 0.357394568496214 4 3 1 -6.87029674813319 LTS-036 chr3 75785499 90264768 14479270 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.333108969737527 120 0.0962694743658543 0.917167747770505 1812 0.240921655514289 3 2 1 -7.25828422346719 LTS-036 chr3 90264769 90283666 18898 * character(0) NA 0 NA 1.20004911168106 7 0.418373323833198 4 NA NA -5.76445511270247 LTS-036 chr3 93591838 93593119 1282 * PROS1 0.389 1 NA 0.835722458885228 25 0.160249804992081 3 3 0 -5.76511372896045 LTS-036 chr3 93593120 94225760 632641 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.401586743181561 2 0.0827314933988261 0.756209126294159 343 0.172278666988833 2 1 1 -6.7948903293665 LTS-036 chr3 96070041 100413943 4343903 * c(MIR548G, MIR3921, ST3GAL6-AS1, ST3GAL6, FILIP1L, COL8A1, CRYBG3, DCBLD2, CPOX, GABRR3, OR5K1, OR5H1, GPR15, EPHA6, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, TMEM45A, TBC1D23, CLDND1, NIT2, TMEM30CP, OR5H6, OR5H2, OR5AC2, ARL6, CMSS1, MINA, ADGRG7, TOMM70) 0.233128198702771 51 0.12722355497775 1.01676988353828 2014 0.259962881839011 3 2 1 -7.29015974945162 LTS-036 chr3 100413944 100413997 54 * ADGRG7 NA 0 NA 0.756 1 NA NA NA NA NA LTS-036 chr3 100413998 100473505 59508 * c(TFG, ABI3BP, ADGRG7) 0 1 NA 0.76564168319634 105 0.254103971250211 2 2 0 -5.76685962832801 LTS-036 chr3 100473506 100558416 84911 * ABI3BP 0.434 1 NA 0.77397096229139 189 0.152566028875117 2 2 0 -5.77749044024578 LTS-036 chr3 100558417 107647536 7089120 * c(ZBTB11-AS1, LINC00882, ZPLD1, FAM172BP, LINC00635, LOC152225, ALCAM, ABI3BP, ZBTB11, LINC00636, PDCL3P4, DUBR, IMPG2, TRMT10C, BBX, PCNP, SENP7, RPL24, NFKBIZ, MIR548A3, CEP97, CCDC54, CBLB, NXPE3) 0.381210672867894 36 0.112953087607201 0.724774141669903 1772 0.193802901606815 2 1 1 -6.74914439034321 LTS-036 chr3 107647537 107647640 104 * LINC00636 NA 0 NA 0.926 1 NA NA NA NA NA LTS-036 chr3 107647641 107799196 151556 * c(LINC00636, CD47) 0.446148423967041 2 0.00777817459305203 0.987137988751548 139 0.2157328665047 4 2 2 -14.6213255849322 LTS-036 chr3 107799197 107879659 80463 * c(IFT57, CD47) NA 0 NA 0.766 1 NA NA NA NA NA LTS-036 chr3 107879660 119534640 11654981 * c(ZBTB20-AS1, PVRL3-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, HHLA2, CD200R1, ADPRH, DPPA2, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, DRD3, TIGIT, USF3, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, MORC1, TUSC7, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, FLJ22763, LINC01205, LSAMP, CD200, TRAT1, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, IFT57, DPPA4, TMEM39A, ABHD10, NA NA NA NA NA NA NA NA NA LTS-036 CFAP44, POGLUT1, ARHGAP31, CCDC191, KIAA1524, POPDC2, ATG3, LINC00488, MIR567, MIR568, UPK1B, ZNF80, ZBED2, C3orf52, QTRT2, NAA50, RETNLB, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, CD80, GUCA1C, DZIP3) 0.331016264931816 189 0.152948415591053 0.722033776637211 6425 0.224803804158322 2 1 1 -6.81504257501789 LTS-036 NA NA NA NA LTS-036 chr3 119534641 119642207 107567 * c(GSK3B, NR1I2) 0.236320176289699 15 0.0580192907164341 0.602294457975549 198 0.570078782614223 1 1 0 -6.78950592820357 LTS-036 chr3 119642208 119642214 7 * GSK3B NA 0 NA 0.96 1 NA NA NA NA NA LTS-036 chr3 119642215 119884682 242468 * c(GPR156, GSK3B) 0.398606988436563 3 0.0349904748943671 0.677872273247704 45 0.144713189000544 2 1 1 -6.84592109620963 LTS-036 chr3 119884683 119905619 20937 * GPR156 0 1 NA 0.734210833400361 74 0.20382944173507 2 2 0 -5.76459387326992 LTS-036 chr3 119905620 120115286 209667 * c(FSTL1, LRRC58, GPR156, MIR198) 0.0630466509703868 9 0.204451773721281 0.807215105206758 271 0.200018105371551 2 2 0 -6.86669996022835 LTS-036 chr3 120115287 120115385 99 * FSTL1 0.489 1 NA 0.76001069962013 3 0.225189549787137 2 2 0 -5.76441419675861 LTS-036 chr3 120115386 122598293 2482908 * c(POLQ, FSTL1, CCDC58, CSTA, DTX3L, PARP15, FAM162A, GOLGB1, RABL3, ILDR1, GTF2E1, HCLS1, HGD, KPNA1, NDUFB4, ARGFX, FBXO40, WDR5B, PARP14, EAF2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, CD86, STXBP5L, IQCB1) 0.376331203911664 74 0.118310790586474 0.744345404342346 2993 0.222173012201786 2 1 1 -6.78019994393741 LTS-036 chr3 122598294 122598384 91 * DIRC2 NA 0 NA 0.914 1 NA NA NA NA NA LTS-036 chr3 122598385 122843212 244828 * c(LOC100129550, PDIA5, SEMA5B, DIRC2) 0.228398961797968 4 0.2091034433002 0.835258229841135 240 0.155116708434986 2 2 0 -6.97342779650512 LTS-036 chr3 122843213 122873923 30711 * PDIA5 0 1 NA 0.822035047749554 25 0.162713009109086 2 2 0 -5.7775658783116 LTS-036 chr3 122873924 124048764 1174841 * c(MYLK-AS1, MIR5002, PDIA5, ADCY5, HACD2, SEC22A, MYLK, ROPN1, CCDC14, KALRN) 0.119308899627654 23 0.181405089024842 0.794970526364428 1061 0.19065531127077 2 2 0 -6.94611686514925 LTS-036 chr3 124048765 124303786 255022 * KALRN 0.435 1 NA 0.828637536002118 203 0.207755918871339 2 2 0 -5.8386755313811 LTS-036 chr3 124303787 127790348 3486562 * c(FAM86JP, MIR548I1, MIR5092, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, OSBPL11, TPRA1, UROC1, ROPN1B, C3orf22, CHST13, KBTBD12, ALG1L, NUP210P1, KLF15, SEC61A1, CFAP100, ITGB5, MCM2, PODXL2, PLXNA1, SLC41A3, MUC13, HEG1, TXNRD3NB, UMPS, ZNF148, ZXDC, ABTB1, CHCHD6, SLC12A8, RUVBL1, SNX4, KALRN) 0.336380006401002 71 0.132096743707743 0.774439626403231 3187 0.180903386107464 2 1 1 -7.1782710919772 LTS-036 chr3 127790349 127790367 19 * c(SEC61A1, RUVBL1) NA 0 NA 0.88 1 NA NA NA NA NA LTS-036 chr3 127790368 136162291 8371924 * c(TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5704, STAG1, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, RPL32P3, H1FOO, NUDT16P1, DNAJB8, EPHB1, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, COL6A5, ANAPC13, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NPHP3-AS1, PCCB, AMOTL2, ACKR4, RAB6B, ACPP, MSL2, PPP2R3A, CDV3, IFT122, HMCES, ISY1, KIAA1257, SRPRB, NA NA NA NA NA NA NA NA NA LTS-036 RHO, EEFSEC, RPN1, RYK, ALG1L2, COL6A4P2, LOC653712, SLCO2A1, TMEM108, SNORA7B, SNORA58, TF, TRH, FAM86HP, CNBP, RAB7A, EFCC1, NEK11, UBA5, C3orf36, CEP63, ACAD11, BFSP2, RUVBL1, MBD4, H1FX, LOC90246, EFCAB12) 0.377822487216766 114 0.157463151489505 0.939942269996318 6212 0.208329403626891 3 2 1 -6.89322933374215 LTS-036 NA NA NA NA LTS-036 chr3 136162292 136170870 8579 * STAG1 NA 0 NA 1.44 1 NA NA NA NA NA LTS-036 chr3 136170871 137787963 1617093 * c(STAG1, DZIP1L, NCK1, CLDN18, IL20RB, SLC35G2, SOX14) 0.312378967962259 10 0.118900331744234 1.11402697936934 410 0.23632410478711 4 3 1 -6.92527428975977 LTS-036 chr3 137787964 137800656 12693 * DZIP1L 0 1 NA 1.15594276311528 23 0.251415384676781 4 4 0 -5.76490043595927 LTS-036 chr3 137800657 138124114 323458 * c(DZIP1L, MRAS, ARMC8, NME9, A4GNT, DBR1) 0.0625480380157479 11 0.167900728245754 1.14212217009095 587 0.260011036345052 4 4 0 -6.75890657669396 LTS-036 chr3 138124115 138176533 52419 * c(MRAS, ESYT3) 0.474 1 NA 1.13073748104455 31 0.277989018890416 4 4 0 -5.76740771967846 LTS-036 chr3 138176534 141011208 2834675 * c(PISRT1, TRIM42, NMNAT3, PRR23B, PRR23C, FOXL2NB, PIK3CB, FAIM, SLC25A36, MRPS22, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, PRR23A, CEP70, ESYT3, SPSB4, PXYLP1, COPB2) 0.375745428747688 30 0.130063507918071 1.14394751516277 1544 0.277265673723141 4 2 2 -6.85543311215343 LTS-036 chr3 141011209 150128994 9117786 * c(WWTR1-AS1, LOC100289361, LOC100507389, HLTF-AS1, SLC9A9-AS1, RNF13, TM4SF18, GRK7, CP, CPA3, CPB1, AGTR1, C3orf58, U2SURP, ZBTB38, GK5, WWTR1, PCOLCE2, SLC9A9, GYG1, PAQR9, PLSCR5, ANKUB1, TM4SF1, ATP1B3, COMMD2, PFN2, PLOD2, PLS1, PLSCR1, XRN1, ATR, PLSCR2, PLSCR4, RASA2, LOC646903, HLTF, TFDP2, TM4SF4, TRPC1, ZIC1, ZIC4, HPS3, PXYLP1, CHST2, RNF7, TSC22D2) 0.347424083951404 98 0.141893957672866 1.06206337507671 4395 0.275259621884195 3 2 1 -7.22888791576572 LTS-036 chr3 150128995 150285664 156670 * c(SERP1, EIF2A, TSC22D2) 0.005 1 NA 1.0224495817792 173 0.278273798556928 3 3 0 -5.76724397299791 LTS-036 chr3 150285665 150301793 16129 * c(SERP1, EIF2A) NA 0 NA 1.0342019453694 37 0.0998941707275522 3 NA NA -5.76787087740597 LTS-036 chr3 150301794 150301883 90 * c(SERP1, EIF2A) NA 0 NA 1.557 1 NA NA NA NA NA LTS-036 chr3 150301884 152177192 1875309 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, ERICH6, AADACP1, SERP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, SELENOT, P2RY13, GPR87, SUCNR1, TMEM14EP, SIAH2, P2RY12, CLRN1, EIF2A, P2RY14) 0.314038652895507 25 0.105950255623414 1.74932271374659 1262 0.440358127379758 6 4 2 -6.77470550526173 LTS-036 chr3 152177193 152552698 375506 * MBNL1 NA 0 NA 1.251 1 NA NA NA NA NA LTS-036 chr3 152552699 156424521 3871823 * c(TIPARP-AS1, ARHGEF26-AS1, LOC100507537, KCNAB1-AS2, KCNAB1-AS1, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, GPR149, MME, P2RY1, RAP2B, SSR3, KCNAB1, GMPS, SLC33A1) 0.24921804996266 17 0.190001141637437 1.06307426117216 1553 0.234041725233836 3 2 1 -7.21257828662757 LTS-036 chr3 156424522 156429286 4765 * TIPARP NA 0 NA 1.753 1 NA NA NA NA NA LTS-036 chr3 156429287 158015987 1586701 * c(LINC00881, PQLC2L, LINC00880, LEKR1, RSRC1, CCNL1, PTX3, PA2G4P4, SHOX2, LINC00886, VEPH1) 0.215327935968034 7 0.211005867668357 1.61320874002936 636 0.446944103844732 6 5 1 -6.76437317047682 LTS-036 chr3 158015988 158072529 56542 * RSRC1 NA 0 NA 0.933 1 NA NA NA NA NA LTS-036 chr3 158072530 158362441 289912 * c(MLF1, RSRC1, GFM1) 0.362268621124396 9 0.0400981434870882 1.08025790756344 163 0.248088927063005 3 2 1 -6.79760430816361 LTS-036 chr3 158362442 158362526 85 * GFM1 0 1 NA 0.960230194666751 3 0.177211737760228 3 3 0 -5.76441047003194 LTS-036 chr3 158362527 158409482 46956 * c(LXN, GFM1) 0.0902671605065579 9 0.197776669784662 1.07107155405485 150 0.417770346180352 4 4 0 -6.73687620656325 LTS-036 chr3 158409483 158415166 5684 * c(RARRES1, GFM1) 0.375 1 NA 1.05738967433513 34 0.260646618118367 3 3 0 -5.76474701994044 LTS-036 chr3 158415167 165490764 7075598 * c(MIR3919, IQCJ-SCHIP1, SMC4, LOC101243545, OTOL1, PPM1L, SPTSSB, SLITRK3, TRIM59, SCHIP1, IL12A, KPNA4, C3orf80, MIR15B, MIR16-2, NMD3, IFT80, BCHE, RARRES1, LINC01192, MFSD1, SI, IQCJ, SCARNA7, ARL14, B3GALNT1) 0.350296978008253 56 0.113933859544252 1.07782322399021 1981 0.295767575775418 3 2 1 -7.19207903017172 LTS-036 chr3 165490765 166578715 1087951 * BCHE 0.448349795217794 3 0.0360046293319808 1.43999074331628 76 0.260604886114337 4 2 2 -8.41050630642163 LTS-036 chr3 166578716 166958049 379334 * character(0) NA 0 NA 2.275 1 NA NA NA NA NA LTS-036 chr3 166958050 169712558 2754509 * c(LOC100128164, PDCD10, WDR49, LRRC34, MECOM, GOLIM4, LRRIQ4, SAMD7, SERPINI1, SERPINI2, MYNN, LINC01330, MIR551B, TERC, SEC62, ZBBX, LRRC31, ACTRT3, EGFEM1P) 0.323875814467886 19 0.0497893809575933 1.97378047789544 1124 0.42246398243523 7 5 2 -6.8205697577907 LTS-036 chr3 169712559 169801658 89100 * c(GPR160, SEC62) 0 1 NA 1.89086261494318 71 0.316962629105541 7 7 0 -5.76626031482719 LTS-036 chr3 169801659 170099103 297445 * c(GPR160, PRKCI, SKIL, PHC3) 0.0440415425272857 4 0.1925 1.94075330407023 436 0.465578826079174 7 7 0 -6.73495982190248 LTS-036 chr3 170099104 175523452 5424349 * c(MIR4789, NAALADL2-AS3, ECT2, RPL22L1, NLGN1, TNIK, NAALADL2, GHSR, TMEM212, CLDN11, PLD1, EIF5A2, NCEH1, SLC7A14, FNDC3B, SKIL, SLC2A2, MIR569, SPATA16, TNFSF10) 0.121936751683356 21 0.13503814275974 2.39637536573711 1979 0.531802614427971 9 8 1 -6.77938019531185 LTS-036 chr3 176737106 179342225 2605120 * c(LINC00578, LINC01014, KCNMB2, KCNMB3, NDUFB5, ZNF639, PIK3CA, MFN1, MRPL47, GNB4, ZMAT3, TBL1XR1, ACTL6A) 0.172832849679045 22 0.0873007564567575 3.09470712485476 1156 0.82370188814659 12 10 2 -6.76364286010869 LTS-036 chr3 179342226 180707583 1365358 * c(DNAJC19, TTC14, CCDC39, NDUFB5, PEX5L, FXR1, USP13) 0.101405227951177 14 0.0906440023654912 3.71430299128355 925 0.892620220584241 13 12 1 -6.73526557791177 LTS-036 chr3 181429700 181431571 1872 * c(SOX2-OT, SOX2) 0.249 1 NA 2.44742057610661 35 0.594209424644321 9 9 0 -5.76441296099752 LTS-036 chr3 181431572 181432262 691 * c(SOX2-OT, SOX2) NA 0 NA 2.21930412458039 15 0.2225545839949 8 NA NA -5.76441340070436 LTS-036 chr3 181432263 181582766 150504 * SOX2-OT NA 0 NA 1.001 1 NA NA NA NA NA LTS-036 chr3 181582767 181582805 39 * character(0) 0.414 1 NA 0.787 1 NA NA NA NA NA LTS-036 chr3 181582806 183535195 1952390 * c(LINC00888, MCF2L2, ATP11B, LAMP3, FLJ46066, DCUN1D1, KLHL24, YEATS2, MCCC1, MAP6D1, B3GNT5, KLHL6) 0.289241482105535 23 0.159242736135303 1.05404959933008 1357 0.260530704488126 3 2 1 -6.93179813105645 LTS-036 chr3 183535196 184299167 763972 * c(MIR1224, ABCC5, ABCC5-AS1, ALG3, AP2M1, CLCN2, FAM131A, HTR3C, DVL3, EIF4G1, HTR3D, EPHB3, HTR3E, POLR2H, ABCF3, PARL, PSMD2, SNORD66, THPO, MAP6D1, CHRD, EIF2B5, VWA5B2, CAMK2N2, ECE2) 0.367712942472392 60 0.0827192703281153 1.13305626436704 2252 0.238404412135212 4 2 2 -6.81466577950697 LTS-036 chr3 184299168 184300047 880 * EPHB3 0 1 NA 1.22593829375096 17 0.286949267908007 4 4 0 -5.76441029521509 LTS-036 chr3 184300048 184870721 570674 * c(EPHB3, VPS8, C3orf70, MAGEF1) 0.000529279859457333 2 0.00282842712474619 1.09605704042078 450 0.275959241446751 20 20 0 -18.6356501973378 LTS-036 chr3 184870722 184907416 36695 * c(C3orf70, EHHADH-AS1) NA 0 NA 2.013 1 NA NA NA NA NA LTS-036 chr3 184907417 185232169 324753 * c(EHHADH, LIPH, EHHADH-AS1, TMEM41A, MAP3K13) 0.116781856265366 8 0.178477689682172 2.0241971041306 486 0.428754008549506 8 7 1 -6.78236523538663 LTS-036 chr3 185232170 185304018 71849 * c(LIPH, SENP2) 0.331 1 NA 1.82400155693333 62 0.381887685568954 6 6 0 -5.7649476692472 LTS-036 chr3 185304019 188242595 2938577 * c(LOC100131635, ADIPOQ-AS1, IGF2BP2, RPL39L, RTP1, CRYGS, DGKG, AHSG, EIF4A2, ETV5, LOC253573, FETUB, HRG, LPP-AS2, NMRAL1P1, RTP2, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, MASP1, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, TRA2B, IGF2BP2-AS1, ST6GAL1, SST, SNORA81, ADIPOQ) 0.270242842051576 56 0.16299283607076 2.03336147163822 1951 0.461372821936522 7 5 2 -6.76171684643765 LTS-036 chr3 188242596 188604445 361850 * LPP 0.217793302614416 15 0.0934592857625078 3.03908091813793 366 1.7069950058586 10 8 2 -6.73612457335306 LTS-036 chr3 188604446 188608476 4031 * LPP NA 0 NA 2.94825857718792 86 0.58591227965695 11 NA NA -5.76441636341639 LTS-036 chr3 188608477 188925099 316623 * TPRG1 NA 0 NA 1.217 1 NA NA NA NA NA LTS-036 chr3 188925100 188933213 8114 * TPRG1 0.423 1 NA 1.12003649007559 11 0.0878309326335132 4 4 0 -5.77014182349212 LTS-036 chr3 188933214 190576702 1643489 * c(MIR944, TPRG1-AS2, CLDN16, TMEM207, TPRG1, IL1RAP, P3H2, GMNC, TP63, CLDN1) 0.43216317738744 16 0.118339553827112 1.24709257218974 839 0.254419462859446 4 2 2 -6.82980727246657 LTS-036 chr3 190576703 190981404 404702 * c(SNAR-I, OSTN, GMNC) 0 1 NA 1.21612577328729 54 0.3504826660925 4 4 0 -5.76474640468745 LTS-036 chr3 190981405 190983392 1988 * character(0) 0 9 0 1.45127478084034 51 0.793677061802452 0 0 0 -Inf LTS-036 chr3 190983393 190985158 1766 * UTS2B 0.491 1 NA 1.14840932026331 7 0.179988623979141 4 4 0 -5.76457184704927 LTS-036 chr3 190985159 191115082 129924 * c(CCDC50, UTS2B) 0.418885547848598 18 0.0479993532091499 1.20251931532168 228 0.996961592324428 4 2 2 -7.02110852080367 LTS-036 chr3 191115083 191179193 64111 * c(CCDC50, PYDC2) 0 1 NA 1.67937075185569 35 0.501773506774561 6 6 0 -5.76465417733396 LTS-036 chr3 191179194 193096529 1917336 * c(MB21D2, PYDC2, FGF12, ATP13A5, HRASLS, MGC2889) 0.2088829973218 12 0.217012969169768 1.22263457623717 362 0.297850685578253 4 3 1 -6.81672792889568 LTS-036 chr3 193096530 193183817 87288 * ATP13A4 0.439 1 NA 1.25411962216532 127 0.244731034433923 4 4 0 -5.76468470708614 LTS-036 chr3 193183818 195047719 1863902 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, LINC00884, OPA1, LSG1, LOC647323, ATP13A3, ATP13A4, TMEM44) 0.433124262600747 51 0.138479558907783 1.23075324084008 1279 0.282739544274275 4 2 2 -6.80519366957288 LTS-036 chr3 195047720 195053676 5957 * ACAP2 NA 0 NA 1.537 1 NA NA NA NA NA LTS-036 chr3 195053677 195346985 293309 * c(MIR5692C1, ACAP2, APOD, PPP1R2) 0.330637395528491 6 0.130832208063101 1.48327130826616 209 0.407096741847733 6 4 2 -6.76607093785803 LTS-036 chr3 195346986 195377558 30573 * character(0) NA 0 NA 0.327 1 NA NA NA NA NA LTS-036 chr3 195377559 195415511 37953 * SDHAP2 0.272033350045888 3 0.187949461292125 0.552988733146721 46 0.499869121034948 1 1 0 -6.78020094648371 LTS-036 chr3 195415512 195426355 10844 * c(MIR570, SDHAP2) NA 0 NA 1.258 1 NA NA NA NA NA LTS-036 chr3 195426356 195451108 24753 * c(MUC20, MIR570) 0.361074317808864 2 0.111722871427474 1.49738070874027 14 0.210291595041397 5 3 2 -6.74379235418941 LTS-036 chr3 195451109 195451810 702 * MUC20 0.101 1 NA 0.847719870840651 5 0.468649869305434 3 3 0 -5.76444717636299 LTS-036 chr3 195451811 195518330 66520 * c(MUC20, MUC4) 0.0392601352164827 13 0.0963310265006382 1.66937815210657 258 0.779049678252557 8 8 0 -6.74234277387092 LTS-036 chr3 195518331 195594805 76475 * c(TNK2, MUC4) 0.314 1 NA 1.76179751441187 57 0.348668611652784 6 6 0 -5.76443397464433 LTS-036 chr3 195594806 195754090 159285 * c(TNK2, SDHAP1) 0.308018004524177 10 0.14897203316954 1.70834529678581 171 0.42838054351065 7 5 2 -6.74666143404 LTS-036 chr3 195754091 195776142 22052 * character(0) NA 0 NA 1.038 1 NA NA NA NA NA LTS-036 chr3 195776143 196386964 610822 * c(TM4SF19-TCTEX1D2, TM4SF19, ZDHHC19, RNF168, SLC51A, FBXO45, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, LINC00885, PCYT1A, TFRC) 0.40408307588349 35 0.148092198172841 1.17255808971862 1060 0.253874718948603 4 2 2 -6.75708506627736 LTS-036 chr3 196386965 196435534 48570 * c(NRROS, CEP19) 0 1 NA 1.18445984983921 77 0.244613868442313 4 4 0 -5.76516708705122 LTS-036 chr3 196435535 196555443 119909 * c(PAK2, PIGX, CEP19) 0.130882616470645 9 0.204810278062406 1.14194719547177 168 0.256945582148495 3 3 0 -6.76979250934904 LTS-036 chr3 196555444 196613075 57632 * c(SENP5, PAK2) 0.412 1 NA 1.08860585488002 94 0.161368196391607 3 3 0 -5.78073404982213 LTS-036 chr3 196613076 197769410 1156335 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, NCBP2-AS2, DLG1, SENP5, LOC220729, NCBP2, MELTF, RPL35A, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.411893028014656 28 0.12199965304834 1.18318458808764 1393 0.243171329159397 4 2 2 -6.78163122158477 LTS-036 chr3 197769411 197770512 1102 * LMLN NA 0 NA 1.11544099852274 25 0.162324808126587 4 NA NA -5.7646581495779 LTS-036 chr4 53174 60400 7227 * c(ZNF595, ZNF718) 0.478 1 NA 1.11873613931853 15 0.201463100721648 4 4 0 -5.76540499922503 LTS-036 chr4 60401 3148570 3088170 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, NA NA NA NA NA NA NA NA NA LTS-036 ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.240499248812876 143 0.120953314238809 1.07646144911718 5067 0.248169753688425 4 3 1 -7.33616791588278 LTS-036 NA NA NA NA LTS-036 chr4 3148571 3162056 13486 * HTT 0 1 NA 1.14454878824865 27 0.194789615488081 4 4 0 -5.76556825776 LTS-036 chr4 3162057 3443917 281861 * c(HTT, HGFAC, MSANTD1, RGS12) 0.0379585317682613 18 0.0906799298257482 1.12974439305954 619 0.355526856661744 4 4 0 -6.89134742432142 LTS-036 chr4 3443918 3443931 14 * HGFAC 0.227 1 NA 2.208 1 NA NA NA NA NA LTS-036 chr4 3443932 4865582 1421651 * c(LOC100133461, STX18-AS1, OTOP1, ADRA2C, ZBTB49, NSG1, DOK7, LINC00955, HGFAC, FAM86EP, LRPAP1, MSX1, STX18, LYAR, TMEM128) 0.297774239973804 68 0.0547632705682948 1.13626783027322 809 0.313312951690553 4 3 1 -6.80114552440958 LTS-036 chr4 4865583 5016268 150686 * MSX1 NA 0 NA 0.694 1 NA NA NA NA NA LTS-036 chr4 5016269 6885296 1869028 * c(MIR378D1, LINC01587, MRFAP1L1, EVC2, CRMP1, JAKMIP1, EVC, MAN2B2, LOC285484, CYTL1, PPP2R2C, BLOC1S4, STK32B, S100P, WFS1, MRFAP1, LOC93622, KIAA0232) 0.300148228630984 70 0.179009953226175 0.75229505666821 1546 0.199525263245445 2 1 1 -6.93117370305285 LTS-036 chr4 6885297 6925237 39941 * c(TBC1D14, KIAA0232) 0.454 1 NA 0.683893187317692 17 0.190098252459709 2 2 0 -5.7658339689202 LTS-036 chr4 6925238 8583312 1658075 * c(LOC100129931, MIR4274, MIR4798, TRMT44, CCDC96, GPR78, SH3TC1, TBC1D14, SORCS2, AFAP1, FLJ36777, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, CPZ, TADA2B, HTRA3) 0.409592766160577 99 0.103690179223336 0.750158201166949 1595 0.173037658188327 2 1 1 -6.83701119219129 LTS-036 chr4 8583313 8589206 5894 * c(GPR78, CPZ) 0 1 NA 0.90277884878512 19 0.322822720346524 3 3 0 -5.76460687823247 LTS-036 chr4 8589207 15569018 6979812 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, MIR5091, C1QTNF7, CLNK, CPEB2, LINC01085, DRD5, BOD1L1, GPR78, LINC01097, LINC01096, HMX1, USP17L6P, USP17L9P, CPEB2-AS1, SLC2A9, CC2D2A, NKX3-2, DEFB131, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, CPZ, ZNF518B, RAB28, WDR1, HS3ST1) 0.250628548538028 38 0.195655998014456 0.76069872939357 1760 0.214279294164126 2 2 0 -7.22360492652235 LTS-036 chr4 15569019 15689928 120910 * c(FBXL5, FAM200B, CC2D2A) 0.438 1 NA 0.693840856381847 201 0.135659171257489 2 2 0 -5.76841924250742 LTS-036 chr4 15689929 25769143 10079215 * c(SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, KCNIP4-IT1, MIR218-1, LAP3, SEPSECS, DCAF16, LGI2, PI4K2B, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, LDB2, CCDC149, SLIT2, CD38, FGFBP1) 0.388945290287946 85 0.127149951175899 0.741207571203863 3311 0.183177546738181 2 1 1 -6.93666173582977 LTS-036 chr4 25769144 37449934 11680791 * c(MIR4275, MIR4801, ARAP2, SEL1L3, RBPJ, SMIM20, DTHD1, PCDH7, TBC1D19, NWD2, STIM2, CCKAR) 0.379857081882296 27 0.11622680205387 0.690627865842522 1332 0.152552052220589 2 1 1 -7.11151588134842 LTS-036 chr4 37449935 37590570 140636 * c(C4orf19, NWD2) 0 1 NA 0.735763733785063 39 0.19186362818904 2 2 0 -5.76605173655302 LTS-036 chr4 37590571 38016012 425442 * c(PTTG2, TBC1D1, PGM2, C4orf19, RELL1) 0.00238002341459446 3 0.00568624070307733 0.698280146542596 256 0.153168260145677 20 20 0 -18.4108567811352 LTS-036 chr4 38016013 38016115 103 * TBC1D1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-036 chr4 38016116 38995374 979259 * c(TLR6, TBC1D1, KLF3, MIR574, TLR1, KLF3-AS1, TMEM156, TLR10, FAM114A1) 0.189716218003541 27 0.171651140282009 0.838433074212361 619 0.223084576870885 2 2 0 -7.05726931786812 LTS-036 chr4 38995375 39064162 68788 * c(KLHL5, TMEM156) 0.374 1 NA 0.841541966027873 25 0.311838777789635 3 3 0 -5.77349212429764 LTS-036 chr4 39064163 48988450 9924288 * c(MIR4802, UGDH-AS1, UCHL1-AS1, ATP8A1, SLC30A9, CORIN, LIAS, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, KCTD8, BEND4, GRXCR1, RHOH, LOC401127, KLHL5, RBM47, OCIAD1, COMMD8, TMEM33, CHRNA9, N4BP2, ATP10D, SLAIN2, WDR19, RFC1, GUF1, RPL9, TEC, TXK, UCHL1, UGDH, NSUN7, NA NA NA NA NA NA NA NA NA LTS-036 CWH43, PHOX2B) 0.312199890051394 199 0.131396900938975 0.820773997750562 6054 0.612914831617483 2 1 1 -7.19102098795422 LTS-036 NA NA NA NA LTS-036 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.809447157321638 87 0.20156609835854 2 NA NA -5.78104994521752 LTS-036 chr4 52709193 52752812 43620 * DCUN1D4 0.259 1 NA 0.88373088045653 43 0.169733662122709 3 3 0 -5.77302931280072 LTS-036 chr4 52752813 56502442 3749630 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, NMU, SPATA18, PDCL2, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, TMEM165, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1, CLOCK) 0.279706393787887 30 0.164088832123293 0.855992327817357 1938 0.198350127291229 3 2 1 -7.67985989321055 LTS-036 chr4 56502443 56697488 195046 * c(NMU, LOC644145) NA 0 NA 1.284 1 NA NA NA NA NA LTS-036 chr4 56697489 56734701 37213 * c(EXOC1, LOC644145) 0.487 1 NA 0.995423307129867 26 0.212172774299263 3 3 0 -5.76464022249263 LTS-036 chr4 56734702 56837458 102757 * c(EXOC1, CEP135) 0 1 NA 1.0871393736118 140 0.19936013728201 3 3 0 -5.78301209962287 LTS-036 chr4 56837459 57441727 604269 * c(THEGL, PAICS, ARL9, AASDH, PPAT, KIAA1211, SRP72, CEP135) 0 9 0 1.0688846206523 676 0.258555411502921 0 0 0 -Inf LTS-036 chr4 57441728 57627276 185549 * c(THEGL, HOPX) 0.499 1 NA 1.03703262914637 83 0.229634626548906 3 3 0 -5.77264304862418 LTS-036 chr4 57627277 65171001 7543725 * c(ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, POLR2B, REST, SPINK2, NOA1) 0.268496491050229 21 0.167043193729731 1.02897512416785 706 0.240159378385899 3 2 1 -7.10744924028187 LTS-036 chr4 65171002 65175534 4533 * TECRL NA 0 NA 0.757 1 NA NA NA NA NA LTS-036 chr4 65175535 69363297 4187763 * c(FTLP10, EPHA5-AS1, CENPC, TMPRSS11B, EPHA5, TECRL, STAP1, GNRHR, TMPRSS11A, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113, UBA6, TMPRSS11GP, TMPRSS11D) 0.337060342558053 61 0.121408876531111 0.772127002992914 1435 0.18605497305268 2 1 1 -7.20729309318354 LTS-036 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 0.013 1 NA NA NA NA NA LTS-036 chr4 69402959 69434229 31271 * UGT2B17 NA 0 NA 0.0597921243439663 42 0.0954902990493985 0 NA NA -7.85086698718565 LTS-036 chr4 69434230 82126294 12692065 * c(FAM47E, CSN1S2BP, LINC01094, LINC01088, LINC00989, MIR4450, FAM47E-STBD1, ENAM, CXCL13, UGT2B11, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, PCAT4, ANTXR2, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, DCK, RASSF6, AFM, AFP, EREG, ALB, FGF5, RUFY3, CNOT6L, C4orf22, EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, SMR3A, GK2, NAAA, SULT1B1, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HTN1, HTN3, NA NA NA NA NA NA NA NA NA LTS-036 CCDC158, SOWAHB, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, ART3, CXCL9, MTHFD2L, LOC441025, MUC7, PF4, PF4V1, NUP54, UGT2B28, PPEF2, PPBP, ODAM, SDAD1, BMP2K, SEPT11, PRKG2, PRDM8, UTP3, UGT2A2, SHROOM3, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, STATH, SULT1E1, BTC, LOC728040, UGT2B4, UGT2B7, UGT2B17, FRAS1, NAA11, CABS1, USO1, SLC4A4, STBD1, CDKL2, CCNG2, MOB1B, SCARB2, ADAMTS3, G3BP2) 0.302553619992895 200 0.157934291963112 0.793877702803272 7942 0.196472939679988 2 1 1 -8.47411494898847 LTS-036 NA NA NA NA LTS-036 chr4 82126295 82347515 221221 * PRKG2 NA 0 NA 1.257 1 NA NA NA NA NA LTS-036 chr4 82347516 82380713 33198 * RASGEF1B NA 0 NA 1.05585182012108 193 0.17538443556222 3 NA NA -5.76860074723425 LTS-036 chr4 83196933 84384121 1187189 * c(THAP9-AS1, HPSE, HELQ, LIN54, SEC31A, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, ENOPH1, MIR575, THAP9, SCD5, FAM175A, HNRNPDL) 0.364092405304491 24 0.100271370919555 0.752539036506957 1155 0.173712928622471 2 1 1 -6.8153954150843 LTS-036 chr4 84384122 84384734 613 * FAM175A NA 0 NA 0.841 1 NA NA NA NA NA LTS-036 chr4 84384735 100738236 16353502 * c(MIR3684, LOC100506746, LOC100507053, MIR4451, MIR5705, TSPAN5, PYURF, STPG2-AS1, FAM13A, CDS1, PDLIM5, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, C4orf36, PPM1K, TIGD2, DMP1, DSPP, EIF4E, MMRN1, WDFY3, METAP1, NAP1L5, DAPP1, HPGDS, FAM13A-AS1, GPRIN3, STPG2, GRID2, IBSP, SLC10A6, HSD17B13, PCNAP1, CCSER1, WDFY3-AS2, AFF1, MTTP, ATOH1, NKX6-1, HSD17B11, HERC5, PDHA2, PKD2, NUDT9, HERC6, MAPK10, NA NA NA NA NA NA NA NA NA LTS-036 SMARCAD1, MEPE, KLHL8, PTPN13, RAP1GDS1, SNCA-AS1, BMPR1B, SNCA, SPP1, ARHGAP24, SPARCL1, C4orf17, FAM175A, GPAT3, UNC5C, HERC3, TRMT10A, ABCG2) 0.310248871450807 107 0.162717310442423 0.802442778048835 6644 0.35347716084869 2 1 1 -7.72844145373506 LTS-036 NA NA NA NA LTS-036 chr4 100738237 100738272 36 * DAPP1 NA 0 NA 0.794 1 NA NA NA NA NA LTS-036 chr4 100738273 101107530 369258 * c(DDIT4L, LOC256880, DAPP1, H2AFZ, DNAJB14, LAMTOR3) 0.461917866836995 7 0.0186356034054633 0.934867019038649 326 0.271345326703331 2 1 1 -11.40002420939 LTS-036 chr4 101107531 106534708 5427178 * c(LINC01216, ARHGEF38-IT1, CENPE, DDIT4L, SLC9B2, SLC9B1, PPA2, MANBA, NFKB1, CISD2, EMCN, TET2, ARHGEF38, BANK1, PPP3CA, BDH2, SLC39A8, TACR3, UBE2D3, CXXC4, FLJ20021) 0.365678706249021 42 0.0802053114579248 0.758575028030481 1958 0.203027627927936 2 1 1 -7.01573574335998 LTS-036 chr4 106534709 106552078 17370 * ARHGEF38 NA 0 NA 0.962 1 NA NA NA NA NA LTS-036 chr4 106552079 107843120 1291042 * c(GIMD1, NPNT, DKK2, ARHGEF38, INTS12, GSTCD, AIMP1, TBCK) 0.18591173749603 13 0.234422503732919 0.98156812626989 707 0.22159375377157 3 3 0 -6.80414010941287 LTS-036 chr4 107843121 119273857 11430737 * c(SNHG8, MIR1243, MIR1973, SEC24B-AS1, SEC24B, RRH, CYP2U1, C4orf32, TRAM1L1, SGMS2, EGF, ENPEP, DKK2, RPL34-AS1, ANK2, HADH, CFI, LRIT3, MIR302B, LEF1, LARP7, PITX2, GAR1, MCUB, ZGRF1, AP1AR, OSTC, RPL34, NEUROG2, LEF1-AS1, NDST4, ETNPPL, SNORA24, MIR577, UGT8, ELOVL6, ARSJ, ALPK1, PLA2G12A, CAMK2D, CASP6, COL25A1, PRSS12, PAPSS1, TIFA, NDST3) 0.350366698778885 91 0.118434824144791 0.804448962677784 4110 0.224093287816429 2 1 1 -8.21712935530898 LTS-036 chr4 119273858 119274066 209 * PRSS12 NA 0 NA 0.529 1 NA NA NA NA NA LTS-036 chr4 119274067 120177708 903642 * c(SYNPO2, MYOZ2, USP53, METTL14, CEP170P1, SEC24D) 0.35711528847747 31 0.0695465652004669 0.753498009854358 756 0.197801084833977 2 1 1 -6.86197493524351 LTS-036 chr4 120177709 120181724 4016 * USP53 0.408 1 NA 0.679306439815381 6 0.047183683620506 2 2 0 -5.76745636332734 LTS-036 chr4 120181725 122591129 2409405 * c(PRDM5, FABP2, ANXA5, LINC01061, C4orf3, MAD2L1, USP53, LOC645513, NDNF, TNIP3, QRFPR, PDE5A) 0.408049631284564 31 0.0899150614723134 0.761133767696006 903 0.183242343559694 2 1 1 -6.92723557908258 LTS-036 chr4 122591130 122872892 281763 * c(PP12613, TMEM155, ANXA5, EXOSC9, BBS7, TRPC3, CCNA2) 0.469864910342881 11 0.0267741394904588 0.930458691222795 444 0.179689052273886 2 1 1 -10.3852830254548 LTS-036 chr4 122872893 123541966 669074 * c(ADAD1, IL2, IL21, TRPC3, KIAA1109) 0.438375630122897 3 0.0550030302195554 0.764160900813052 604 0.148336229420511 2 1 1 -7.3292798400644 LTS-036 chr4 123541967 123541969 3 * IL21 NA 0 NA 1.028 1 NA NA NA NA NA LTS-036 chr4 123541970 123833890 291921 * c(NUDT6, BBS12, FGF2, IL21, CETN4P) 0.458938958905578 7 0.0270105799377101 1.02791700646961 226 0.206988403524707 4 2 2 -9.62063443564364 LTS-036 chr4 123833891 123838656 4766 * NUDT6 NA 0 NA 0.857 1 NA NA NA NA NA LTS-036 chr4 123838657 139140494 15301838 * c(MIR2054, SPRY1, PGRMC2, PLK4, NUDT6, SCLT1, C4orf33, PABPC4L, SPATA5, HSPA4L, SLC7A11, MFSD8, INTU, LINC01091, PCDH18, LARP1B, ANKRD50, PCDH10, SLC7A11-AS1, LINC00616, FAT4, JADE1, ABHD18, SLC25A31) 0.38981284472595 32 0.0915979061512343 0.792384607543362 2440 0.168017986680614 2 1 1 -8.96596637271934 LTS-036 chr4 139140495 140187492 1046998 * c(LINC00499, ELF2, SLC7A11, NOCT, MGARP) 0.352 1 NA 0.752096001496443 157 0.161255069286426 2 2 0 -5.82121182552845 LTS-036 chr4 140187493 141363818 1176326 * c(SCOC-AS1, CLGN, MGST2, NDUFC1, MAML3, SCOC, NAA15, SETD7, RAB33B, MGARP) 0.358912023081237 6 0.0353237408362516 0.760526103929482 872 0.172510759426132 2 1 1 -7.12327142005118 LTS-036 chr4 141363819 141789184 425366 * c(MGAT4D, TBC1D9, ELMOD2, RNF150, TNRC18P1, UCP1) 0.216065174531346 6 0.225095313145343 0.959157704180684 432 0.164193939145062 3 3 0 -6.87734002436202 LTS-036 chr4 141789185 147863723 6074539 * c(LINC01095, ANAPC10, LSM6, ZNF827, FREM3, MMAA, GAB1, ZNF330, GYPA, GYPB, GYPE, IL15, SMAD1, GUSBP5, POU4F2, OTUD4, RNF150, ABCE1, HHIP, HHIP-AS1, C4orf51, TTC29, SLC10A7, USP38, SMARCA5, INPP4B) 0.316204557243185 58 0.157900235183556 0.797471549315679 2726 0.26924507582569 2 1 1 -7.37353173000015 LTS-036 chr4 147863724 147863822 99 * TTC29 NA 0 NA 0.829 1 NA NA NA NA NA LTS-036 chr4 147863823 151236264 3372442 * c(MIR4799, DCLK2, EDNRA, NR3C2, TMEM184C, ARHGAP10, TTC29, PRMT9, LRBA) 0.290084406447198 9 0.181889465824104 0.70826231855856 763 0.158617603433263 2 1 1 -6.90182063745232 LTS-036 chr4 151236265 164245933 13009669 * c(MIR3140, MIR3688-1, MIR3688-2, MAB21L2, CTSO, SH3D19, C4orf45, RBM46, C4orf46, TIGD4, TMEM154, ETFDH, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, GLRB, RNF175, GRIA2, GUCY1A3, GUCY1B3, ANXA2P1, LOC340017, PRSS48, NPY1R, NPY2R, FAM198B, ASIC5, GATB, PLRG1, DKFZP434I0714, DCHS2, PPID, FBXW7, TMEM144, PDGFC, FSTL5, FNIP2, RXFP1, RPS3A, SFRP2, TDO2, TLR2, FAM160A1, MAP9, MND1, FHDC1, SNORD73A, LRAT, NAF1, NA NA NA NA NA NA NA NA NA LTS-036 RAPGEF2, LRBA) 0.290205380468275 106 0.162687452735692 0.797020880860119 5163 0.804534179927206 2 1 1 -7.06371071540784 LTS-036 NA NA NA NA LTS-036 chr4 164245934 164246032 99 * NPY1R NA 0 NA 0.68 1 NA NA NA NA NA LTS-036 chr4 164246033 165962638 1716606 * c(LINC01207, APELA, FAM218A, TRIM60, ANP32C, TRIM61, NPY1R, NPY5R, MARCH1, TMA16, TKTL2) 0.000976898170960082 5 0.00336154726279432 0.72444882373578 479 0.17544843813737 2 2 0 -24.3552536608093 LTS-036 chr4 165962639 165997319 34681 * c(TRIM60, TMEM192) NA 0 NA 1.52981420436634 40 0.384136693585727 5 NA NA -5.7645083344946 LTS-036 chr4 165997320 186112111 20114792 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, CPE, ASB5, WWC2-AS2, DCTD, AGA, TMEM192, RWDD4, PRIMPOL, ACSL1, PALLD, FBXO8, GK3P, GPM6A, LINC01098, SLC25A4, HMGB2, HPGD, ING2, IRF2, LOC389247, HELT, FAM92A1P2, GALNTL6, NEK1, SPOCK3, AADAT, GALNT7, CLDN22, HPF1, NEIL3, DDX60, CDKN2AIP, TENM3, STOX2, CFAP97, SH3RF1, NA NA NA NA NA NA NA NA NA LTS-036 SPCS3, TRAPPC11, MSMO1, SLED1, MIR578, TLL1, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, CBR4, SAP30, LOC90768, DDX60L, HAND2, MFAP3L) 0.312221368734756 142 0.152264640272307 0.781796691778569 5788 0.287200638513226 2 1 1 -7.81737349131522 LTS-036 NA NA NA NA LTS-036 chr4 186112112 186378541 266430 * c(CCDC110, ANKRD37, C4orf47, UFSP2, LRP2BP, CFAP97, SNX25) 0 1 NA 0.779525315665163 387 0.16293196818769 2 2 0 -5.80714250917754 LTS-036 chr4 186378542 186382206 3665 * CCDC110 0.0277495796259578 9 0.130666666666667 0.879655053274539 67 0.30686786853323 9 9 0 -6.7657041392395 LTS-036 chr4 186382207 186423637 41431 * c(CCDC110, PDLIM3) 0.4 1 NA 0.753136293774576 49 0.149904411152551 2 2 0 -5.76718566186807 LTS-036 chr4 186423638 187205301 781664 * c(F11, FAM149A, PDLIM3, CYP4V2, KLKB1, FLJ38576, TLR3, SORBS2) 0.300277886269597 26 0.156165237932331 0.806278284986863 692 0.194047345277289 2 1 1 -7.07328343322448 LTS-036 chr4 187205302 187511861 306560 * c(F11, FAT1, F11-AS1, MTNR1A) 0 1 NA 0.830055296416044 104 0.169754392495367 2 2 0 -5.89988817675954 LTS-036 chr4 187511862 187629140 117279 * FAT1 0.0274000542687326 11 0.125127207999772 0.86782376831722 297 0.227765730173522 3 3 0 -6.97479003479611 LTS-036 chr4 187629141 187630310 1170 * FAT1 0.34 1 NA 0.826444150762895 25 0.153286518215617 2 2 0 -5.76502039234142 LTS-036 chr4 187630311 190981476 3351166 * c(ZFP42, TRIML2, FAT1, FRG1, LOC339975, TRIML1, LINC01060) 0.30114229303911 20 0.13266832406617 0.819494451465186 341 0.546250654988043 3 2 1 -7.01708446414878 LTS-036 chr4 190981477 190981567 91 * character(0) NA 0 NA 0.952 1 NA NA NA NA NA LTS-036 chr5 140347 171298 30952 * PLEKHG4B 0.348 1 NA 0.909803980730952 89 0.163896605496137 3 3 0 -5.76764280724348 LTS-036 chr5 171299 35789164 35617866 * c(SNORD123, LOC100130744, PDCD6, CDH6, MIR4279, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4456, MIR4635, CDH9, CDH10, LOC100996325, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, TPPP, EXOC3, C1QTNF3, EXOC3-AS1, CCDC127, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, PLEKHG4B, C5orf38, IRX2, TTC23L, DAP, ADAMTS16, DNAH5, CCT5, NA NA NA NA NA NA NA NA NA LTS-036 PDZD2, FBXL7, ICE1, AMACR, LINC01018, PP7080, RAI14, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, LRRC14B, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, BRIX1, C5orf22, CEP72, ANKH, PRLR, PRDM9, AHRR, RAD1, SDHA, GOLPH3, LINC01021, AGXT2, MRPL36, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ANKRD33B, SLC6A3, SLC9A3, BRD9, SRD5A1, TARS, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.222435804465463 335 0.144848244340898 0.967608557181574 10739 0.231673391770403 3 3 0 -7.1204731667881 LTS-036 NA NA NA NA LTS-036 chr5 35789165 35962984 173820 * c(UGT3A1, CAPSL, IL7R, SPEF2) 0.017 1 NA 0.978334379620623 325 0.186347835824378 3 3 0 -5.76446368264278 LTS-036 chr5 35962985 37288535 1325551 * c(NADK2, UGT3A1, UGT3A2, RANBP3L, NIPBL, NIPBL-AS1, SKP2, SLC1A3, C5orf42, MIR580, LMBRD2) 0.0238312176318443 14 0.0767381733737991 0.960187287846866 1290 0.222657522998158 3 3 0 -7.34550547124732 LTS-036 chr5 37288536 38412674 1124139 * c(EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, GDNF, WDR70, NUP155) 0.378 1 NA 0.967756008729408 476 0.203720195845892 3 3 0 -5.76512852458438 LTS-036 chr5 38412675 38528939 116265 * c(EGFLAM, LIFR) 0.33851318041921 5 0.0364101634162771 0.972970987590709 320 0.242326134206275 3 2 1 -6.82175288555714 LTS-036 chr5 38528940 38530570 1631 * LIFR NA 0 NA 0.755 1 NA NA NA NA NA LTS-036 chr5 38530571 44809446 6278876 * c(CCDC152, LOC100132356, MIR3650, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.223486787831705 68 0.145604338375679 0.909156510308216 3299 0.363810372641155 3 3 0 -7.23766615277805 LTS-036 chr5 44809447 45696278 886832 * c(MRPS30, HCN1) NA 0 NA 0.990514978840079 144 0.254462272594678 3 NA NA -5.76667263747444 LTS-036 chr5 49692017 50118250 426234 * c(EMB, PARP8) 0.322 1 NA 0.559890365979868 197 0.134390972509981 1 1 0 -6.28268426406299 LTS-036 chr5 50118251 53371333 3253083 * c(FST, LOC257396, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, ARL15, LOC642366, MIR581, PARP8) 0.363087957310441 21 0.145391245560777 0.582982519025066 975 0.156242801934765 2 1 1 -9.01596064936168 LTS-036 chr5 53371334 53450542 79209 * ARL15 0.466 1 NA 0.627456213370686 8 0.219833662767362 2 2 0 -5.7816178563999 LTS-036 chr5 53450543 68849879 15399337 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, PIK3R1, DHX29, NA NA NA NA NA NA NA NA NA LTS-036 DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.417950350034723 157 0.0967017873091796 0.613210255416901 7136 0.167599764850196 2 1 1 -10.686068816945 LTS-036 NA NA NA NA LTS-036 chr5 68849880 68850164 285 * OCLN NA 0 NA 1.317 1 NA NA NA NA NA LTS-036 chr5 68850165 69373289 523125 * c(NA, OCLN, GUSBP3, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.871296416646491 45 0.257283968416301 3 NA NA -5.82294021009842 LTS-036 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.002 1 NA NA NA NA NA LTS-036 chr5 69717474 70308793 591320 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.359614292982737 59 0.194872199574885 1 NA NA -6.27016344299601 LTS-036 chr5 70308794 70357050 48257 * c(GUSBP9, GTF2H2, NAIP) NA 0 NA 0.779 1 NA NA NA NA NA LTS-036 chr5 70357051 89810208 19453158 * c(GUSBP9, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-036 NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 CARTPT, ZFYVE16) 0.4386428295342 206 0.0704933173476049 0.634082763468799 9147 0.370502401259722 2 1 1 -8.11930060169762 LTS-036 NA NA NA NA LTS-036 chr5 89810209 89816299 6091 * c(POLR3G, LYSMD3) 0 1 NA 0.658768682906461 91 0.17727661862637 2 2 0 -5.76522596979757 LTS-036 chr5 89816300 90368464 552165 * c(LYSMD3, ADGRV1) 0.177856476195367 7 0.139306616258286 0.642127227045614 578 0.160197012004546 2 2 0 -6.92210714886518 LTS-036 chr5 90368465 90398034 29570 * ADGRV1 NA 0 NA 0.495 1 NA NA NA NA NA LTS-036 chr5 90398035 94206202 3808168 * c(ARRDC3-AS1, MIR2277, POU5F2, KIAA0825, NR2F1-AS1, ARRDC3, NR2F1, MCTP1, FAM172A, ADGRV1, SLF1) 0.399113251003495 2 0.0431335136523794 0.595510806110025 744 0.134562005882193 2 1 1 -9.46849728125469 LTS-036 chr5 94206203 94278129 71927 * MCTP1 0.492 1 NA 0.645158627940575 85 0.180158343052517 2 2 0 -5.77893589501054 LTS-036 chr5 94278130 95124858 846729 * c(ARSK, FAM81B, RHOBTB3, GPR150, RFESD, MCTP1, SPATA9, TTC37) 0.47068020793995 10 0.0251009074647821 0.586756577882582 638 0.115881011665132 2 1 1 -11.5718928228708 LTS-036 chr5 95124859 95129251 4393 * RHOBTB3 0.39 1 NA 0.579484716759587 17 0.139447966260242 2 2 0 -5.77049485829259 LTS-036 chr5 95129252 95728440 599189 * c(LINC01554, RHOBTB3, ELL2, GLRX, PCSK1, MIR583) 0.166837763543524 9 0.233382732865994 0.577074722587613 351 0.162239105014072 2 2 0 -7.31826733622183 LTS-036 chr5 95728441 95733112 4672 * PCSK1 0.488 1 NA 0.638915619019887 23 0.0762226559536757 2 2 0 -5.7707135387747 LTS-036 chr5 95733113 96369179 636067 * c(LNPEP, PCSK1, ERAP1, ERAP2, CAST) 0.43903751340619 50 0.0766642321411747 0.582738682126444 843 0.123381717887921 2 1 1 -7.93275415858303 LTS-036 chr5 96369180 96371042 1863 * character(0) 0.471 1 NA 0.970171409744641 39 0.254576240207669 3 3 0 -5.7644104324274 LTS-036 chr5 96371043 96371141 99 * character(0) NA 0 NA 0.728 1 NA NA NA NA NA LTS-036 chr5 96371142 115815832 19444691 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, RGMB, APC, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, ST8SIA4, NA NA NA NA NA NA NA NA NA LTS-036 REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.419883403135544 179 0.101690452298297 0.619351632562095 5971 0.185979685616673 2 1 1 -10.4565782531129 LTS-036 NA NA NA NA LTS-036 chr5 115815833 117938722 2122890 * c(SEMA6A, LINC00992) 0 1 NA 0.668358785822586 63 0.274988982696032 2 2 0 -5.84427588740927 LTS-036 chr5 117938723 118728953 790231 * c(DMXL1, TNFAIP8, DTWD2) 0.245332330933645 14 0.24156751155187 0.598519289127222 492 0.187683436461834 2 2 0 -7.24580908603056 LTS-036 chr5 118728954 118811533 82580 * c(TNFAIP8, HSD17B4) 0.473 1 NA 0.582816630281316 61 0.139354005316726 2 2 0 -5.87104995310274 LTS-036 chr5 118811534 118965554 154021 * c(HSD17B4, FAM170A) 0.470677511631873 4 0.0148996644257513 0.587119537639926 121 0.144978019612626 2 1 1 -13.0030709752849 LTS-036 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 0.81 1 NA NA NA NA NA LTS-036 chr5 118968368 126253810 7285443 * c(LOC100505841, MARCH3, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, SNX24, FAM170A, TEX43, LMNB1, LOX, ALDH7A1, PRR16, PHAX, PPIC, ZNF608, GRAMD3, SNX2, PRDM6, FTMT, SNCAIP) 0.36560049253537 50 0.17055985124625 0.647771103967173 1804 0.179834619781524 2 1 1 -7.8677775460926 LTS-036 chr5 126253811 126387583 133773 * c(MARCH3, C5orf63) 0.5 1 NA 0.608279041676995 15 0.1327393794514 2 2 0 -5.88379207779174 LTS-036 chr5 126387584 127625559 1237976 * c(PRRC1, FBN2, C5orf63, CTXN3, LINC01184, SLC12A2, MEGF10) 0.208650897643831 9 0.242110511956833 0.670139371178444 771 0.194894524659919 2 2 0 -6.86322653671005 LTS-036 chr5 127625560 127636485 10926 * FBN2 0.487 1 NA 0.757579053634746 17 0.123293737019507 2 2 0 -5.76576131957175 LTS-036 chr5 127636486 128449644 813159 * c(MIR4633, FBN2, SLC27A6, ISOC1) 0.437889777282302 12 0.0445533388198909 0.641853250562071 439 0.147012496278564 2 1 1 -7.7430147083381 LTS-036 chr5 128449645 128863518 413874 * c(MIR4460, ADAMTS19, ISOC1) 0 1 NA 0.624911619616291 31 0.097364739372723 2 2 0 -6.21682658351401 LTS-036 chr5 128863519 131630478 2766960 * c(KIAA1024L, CSF2, ADAMTS19, ACSL6, HINT1, CHSY3, IL3, RAPGEF6, CDC42SE2, SLC22A4, MEIKIN, PDLIM4, P4HA2, LYRM7, FNIP1) 0 8 0 0.631948343301246 1348 0.158730184073529 0 0 0 -Inf LTS-036 chr5 131630479 131714191 83713 * c(MIR3936, LOC553103, SLC22A4, SLC22A5) NA 0 NA 0.444353625769644 93 0.0985704694490461 1 NA NA -5.76944983180301 LTS-036 chr5 131714192 131719715 5524 * SLC22A5 NA 0 NA 0.667 1 NA NA NA NA NA LTS-036 chr5 131719716 132161294 441579 * c(RAD50, KIF3A, SOWAHA, SHROOM1, SEPT8, IL4, IL5, IL13, IRF1, C5orf56, CCNI2, SLC22A5) 0.0135471940756179 17 0.10647313939095 0.606938936518138 967 0.144688274435407 2 2 0 -7.83299828996741 LTS-036 chr5 132161295 132198100 36806 * c(SHROOM1, GDF9) 0.483 1 NA 0.610503030022281 43 0.144440559762625 2 2 0 -5.79133876579327 LTS-036 chr5 132198101 132214250 16150 * c(LEAP2, GDF9, UQCRQ, AFF4) 0.456576956981785 9 0.0545366849010829 0.601446742886631 174 0.140064584631218 2 1 1 -7.64015937099775 LTS-036 chr5 132214251 132216264 2014 * AFF4 0 1 NA 0.59693862017795 43 0.0898997657662596 2 2 0 -5.76937416830081 LTS-036 chr5 132216265 134364518 2148254 * c(MIR1289-2, MIR3661, MIR4461, SEC24A, C5orf24, FSTL4, JADE2, AFF4, HSPA4, CATSPER3, SAR1B, CDKL3, PITX1, ZCCHC10, PPP2CA, C5orf15, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, DDX46) 0.226794831482952 31 0.234278434658926 0.614465729325086 2103 0.190981293804297 2 2 0 -7.54374688189124 LTS-036 chr5 134364519 134364996 478 * PITX1 0.386 1 NA 0.529966243495005 11 0.0713864005383252 1 1 0 -5.76558998383113 LTS-036 chr5 134364997 137426447 3061451 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, PKD2L2, C5orf66-AS2, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, NPY6R, TIFAB, FAM13B, PITX1, TRPC7, SPOCK1, TGFBI, WNT8A, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.400590601772318 43 0.136005056579829 0.658119999202577 1647 0.163029309898759 2 1 1 -7.20052198247947 LTS-036 chr5 137426448 137486426 59979 * c(BRD8, WNT8A, NME5) 0 1 NA 0.613951671532901 83 0.15650882043118 2 2 0 -5.79915375999385 LTS-036 chr5 137486427 139215386 1728960 * c(KIF20A, BRD8, CTNNA1, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, HSPA9, TMEM173, PROB1, MZB1, PAIP2, FAM53C, REEP2, CXXC5, KDM3B, ECSCR, SIL1, SNHG4, UBE2D2, PSD2, CDC23, MATR3, CDC25C, SLC23A1) 0.134020169869924 9 0.229398004447389 0.618723935414405 2147 0.15544208842763 2 2 0 -7.53724556393221 LTS-036 chr5 139215387 139223085 7699 * PSD2 0.479 1 NA 0.714265938253818 49 0.153304005809629 2 2 0 -5.76441177483631 LTS-036 chr5 139223086 140553623 1330538 * c(SRA1, LINC01024, APBB3, SLC35A4, ZMAT2, HBEGF, HARS2, PCDHB5, PCDHB1, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, IGIP, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, SLC4A9, PSD2, CYSTM1, EIF4EBP3, CD14, NRG2, PCDHA9 NA NA NA NA NA NA NA NA NA LTS-036 ) 0.434532301182882 60 0.0950738205603004 0.625236289709892 2633 0.149369208246388 2 1 1 -7.49093345417799 LTS-036 NA NA NA NA LTS-036 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.19 1 NA NA NA NA NA LTS-036 chr5 140554692 140558897 4206 * c(PCDHB8, PCDHB7) 0.431055612829385 2 0.00777817459305203 0.216393381757933 61 0.0711253300049006 0 0 0 -12.9624219498688 LTS-036 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.22 1 NA NA NA NA NA LTS-036 chr5 140559822 141017516 457695 * c(LOC100505658, DIAPH1, PCDHGA12, RELL2, PCDHGC3, PCDHB18P, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, HDAC3, PCDHGA8) 0.450011541706215 44 0.0343761296181875 0.62243788861738 1973 0.131337927253144 2 1 1 -8.65784228438484 LTS-036 chr5 141017517 141019110 1594 * c(RELL2, FCHSD1) 0 1 NA 0.637107759125995 21 0.159112853032054 2 2 0 -5.76492871338301 LTS-036 chr5 141019111 141059868 40758 * c(RELL2, ARAP3, FCHSD1) 0.16594489913413 16 0.241099668187246 0.688660750347863 336 0.213253075456234 2 2 0 -6.73956126416498 LTS-036 chr5 141059869 141309824 249956 * c(PCDH1, ARAP3, LOC729080, KIAA0141) 0.478 1 NA 0.654932886702202 165 0.134440775158169 2 2 0 -5.83031230804435 LTS-036 chr5 141309825 147929740 6619916 * c(GNPDA1, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DPYSL3, STK32A, FGF1, ARHGAP26, NR3C1, HTR4, C5orf46, SPINK6, SPINK14, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, KCTD16, HMHB1, GRXCR2, SPINK9, SPINK1, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SPINK7, RNF14, KIAA0141, JAKMIP2) 0.429155585743471 63 0.0812149392627182 0.638167310693905 3330 0.966366368151532 2 1 1 -6.96300578757066 LTS-036 chr5 147929741 148042230 112490 * c(HTR4, SH3TC2) 0 1 NA 0.691095671027192 11 0.234695896079083 2 2 0 -5.76598593908694 LTS-036 chr5 148042231 149013844 971614 * c(AFAP1L1, GRPEL2, CSNK1A1, ADRB2, ABLIM3, IL17B, HTR4, ARHGEF37, MIR143, CARMN, PCYOX1L, SH3TC2) 0.310571151248348 25 0.196173239765265 0.667541812040174 1012 0.190446857788468 2 1 1 -6.89669465819474 LTS-036 chr5 149013845 149014418 574 * ARHGEF37 0 1 NA 0.69072929348319 11 0.164441644802813 2 2 0 -5.76442697671179 LTS-036 chr5 149014419 149232213 217795 * c(PPARGC1B, ARHGEF37) 0 10 0 0.682299550448805 244 0.241474829678818 0 0 0 -Inf LTS-036 chr5 149232214 149240571 8358 * c(PPARGC1B, PDE6A) 0.412 1 NA 0.68043320164827 103 0.184818854929998 2 2 0 -5.76479815476996 LTS-036 chr5 149240572 149682210 441639 * c(CDX1, CSF1R, SLC26A2, HMGXB3, ARSI, PDE6A, PDGFRB, SLC6A7, CAMK2A, TIGD6) 0.38651487817992 25 0.135238406773618 0.654443913419192 1203 0.138539936370895 2 1 1 -6.84377947568501 LTS-036 chr5 149682211 149749197 66987 * c(ARSI, TCOF1) 0 1 NA 0.706241321180736 39 0.21063848698595 2 2 0 -5.76459245912885 LTS-036 chr5 149749198 149826572 77375 * c(RPS14, TCOF1, CD74) 0.0599657627865305 9 0.186248564498569 0.673778887900947 239 0.207204235216352 2 2 0 -6.85248748818001 LTS-036 chr5 149826573 149907533 80961 * c(NDST1, RPS14) 0.476 1 NA 0.601179060831628 35 0.14377420439265 2 2 0 -5.83572999674262 LTS-036 chr5 149907534 150562176 654643 * c(TNIP1, SYNPO, ZNF300P1, CCDC69, GPX3, ANXA6, NDST1, IRGM, DCTN4, RBM22, SMIM3, ZNF300, MYOZ3) 0.377238156755803 30 0.143851791546141 0.63264593458503 1203 0.409060329235524 2 1 1 -6.77070552932818 LTS-036 chr5 150562177 150564975 2799 * CCDC69 0 1 NA 0.676451108858655 27 0.150587917170405 2 2 0 -5.76465305803304 LTS-036 chr5 150564976 150695724 130749 * c(SLC36A2, CCDC69, GM2A, SLC36A3) 0.193856137731893 15 0.235369516980873 0.625166161234011 249 0.242877148312007 2 2 0 -6.78606828516083 LTS-036 chr5 150695725 150704758 9034 * SLC36A2 0.427 1 NA 0.630420477739269 26 0.136529562873619 2 2 0 -5.76915209274005 LTS-036 chr5 150704759 150914184 209426 * c(SLC36A2, SLC36A1, FAT2) 0.403360399405004 16 0.157184604844113 0.61243876473055 347 0.150694545840776 2 1 1 -6.87424604696982 LTS-036 chr5 150914185 150924769 10585 * FAT2 0 1 NA 0.666490806210628 73 0.161133401203032 2 2 0 -5.76568195089942 LTS-036 chr5 150924770 151304306 379537 * c(LOC100652758, G3BP1, FAT2, GLRA1, ATOX1, SPARC) 0.0575075568083811 13 0.132407539099012 0.630176108095152 663 0.171499782240702 2 2 0 -7.09479005827864 LTS-036 chr5 151304307 151777623 473317 * c(GLRA1, NMUR2) 0.482 1 NA 0.597449353652886 33 0.0747121369597397 2 2 0 -7.09560174449733 LTS-036 chr5 151777624 155820716 4043093 * c(MIR3141, FAXDC2, FAM114A2, LARP1, GEMIN5, KIF4B, GRIA1, MRPL22, SAP30L-AS1, MFAP3, GALNT10, NMUR2, SGCD, SAP30L, CNOT8, HAND1) 0.414014370106423 30 0.118791713786643 0.646776875227012 1438 0.14531550955016 2 1 1 -7.77744876068702 LTS-036 chr5 155820717 156187928 367212 * SGCD 0 1 NA 0.627055817436577 67 0.1632455010798 2 2 0 -5.90743252697617 LTS-036 chr5 156187929 158753800 2565872 * c(C5orf52, SOX30, LSM11, UBLCP1, PPP1R2P3, FAM71B, RNF145, EBF1, HAVCR1, CYFIP2, NIPAL4, IL12B, ITK, FNDC9, THG1L, SGCD, HAVCR2, ADAM19, TIMD4, MED7, CLINT1) 0.305325828304459 22 0.210108964721349 0.634761887565784 1974 0.177058335123453 2 1 1 -7.46120762271096 LTS-036 chr5 159343803 167631477 8287675 * c(MIR3142, SLU7, PWWP2A, C1QTNF2, NUDCD2, ADRA1B, FABP6, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, MAT2B, LOC285629, HMMR, MIR146A, TENM2, ZBED8, TTC1, CCNJL, CCNG1, PTTG1) 0.227909073484326 31 0.102865189990725 1.19869724279492 1658 0.272046427869497 4 3 1 -6.99515596929971 LTS-036 chr5 167631478 167631482 5 * TENM2 NA 0 NA 1.129 1 NA NA NA NA NA LTS-036 chr5 167631483 167689296 57814 * TENM2 0.285054192487418 2 0.0586898628384834 1.11787182282084 120 0.195507733554332 4 3 1 -6.74607880804207 LTS-036 chr5 167689297 167898299 209003 * c(WWC1, TENM2) 0 1 NA 1.15937442008589 199 0.274581326712948 4 4 0 -5.77055891562832 LTS-036 chr5 167898300 169413019 1514720 * c(FAM196B, MIR103B1, DOCK2, WWC1, FBLL1, MIR103A1, MIR218-2, SPDL1, RARS, SLIT3, MIR585, PANK3) 0.0492193341959009 19 0.113194548667121 1.10386888767591 907 0.305182891178682 4 4 0 -6.90346009626986 LTS-036 chr5 169413020 169422997 9978 * DOCK2 NA 0 NA 0.647 1 NA NA NA NA NA LTS-036 chr5 169422998 169435713 12716 * DOCK2 0 1 NA 0.772423196759308 13 0.425311062635338 2 2 0 -5.76464982188022 LTS-036 chr5 169435714 169454831 19118 * DOCK2 0.447 1 NA 0.774591769363793 7 0.189368122223054 2 2 0 -5.76636509924022 LTS-036 chr5 169454832 171630205 2175374 * c(MIR3912, MIR378E, C5orf58, DOCK2, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, TLX3, KCNIP1, KCNMB1, LCP2, NPM1, RANBP17, STK10, FGF18) 0.270576356263221 39 0.205687081360489 0.735876798875916 1301 0.247356619629001 2 1 1 -6.92804219604348 LTS-036 chr5 171630206 172742502 1112297 * c(LOC100268168, NKX2-5, CREBRF, DUSP1, EFCAB9, SH3PXD2B, RPL26L1, NEURL1B, ERGIC1, BNIP1, SNORA74B, STC2, ATP6V0E1, UBTD2) 0.373160911991205 31 0.137003374889755 0.646447964213695 1074 0.144894894278002 2 1 1 -7.05491536252791 LTS-036 chr5 172742503 172742508 6 * STC2 NA 0 NA 0.923 1 NA NA NA NA NA LTS-036 chr5 172742509 175386614 2644106 * c(MIR4634, CPLX2, C5orf47, DRD1, LOC285593, HRH2, FLJ16171, MSX2, HMP19, CPEB4, THOC3, STC2, BOD1, SFXN1) 0.309306959835839 26 0.208145289493809 0.756594695839219 888 0.204199571945609 2 1 1 -6.92263334500701 LTS-036 chr5 175386615 175388460 1846 * THOC3 0.015 1 NA 0.293219993211149 66 0.2579249601756 0 0 0 -5.76680880387239 LTS-036 chr5 175388461 175391941 3481 * THOC3 NA 0 NA 0.606 1 NA NA NA NA NA LTS-036 chr5 175391942 175477131 85190 * THOC3 NA 0 NA 1.2662110825833 42 0.772422131283557 4 NA NA -5.76447405618003 LTS-036 chr5 175477132 176733341 1256210 * c(MIR4281, LOC100507387, GPRIN1, CLTB, HIGD2A, FAM153B, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, HK3, SIMC1, NOP16, UIMC1, RAB24, CDHR2, KIAA1191, LOC643201, NSD1, SNCB, MXD3, UNC5A) 0.342668090304978 57 0.172803091758519 0.709099955035471 2090 0.170405544843335 2 1 1 -6.77118234309525 LTS-036 chr5 176733342 176758786 25445 * c(LMAN2, PRELID1, MXD3) 0.426 1 NA 0.657447080451647 69 0.115216919846548 2 2 0 -5.77286028452888 LTS-036 chr5 176758787 176916516 157730 * c(RGS14, LMAN2, DBN1, F12, GRK6, PRR7-AS1, PFN3, SLC34A1, PRR7, PDLIM7) 0.0976399202406466 9 0.200277307751028 0.727743565317823 594 0.202550034187988 2 2 0 -6.76347932233884 LTS-036 chr5 176916517 176917078 562 * PDLIM7 0.475 1 NA 0.630488846204956 13 0.0656878789115423 2 2 0 -5.76568095800038 LTS-036 chr5 176917079 177551154 634076 * c(B4GALT7, LOC202181, N4BP3, FAM153A, DDX41, FAM193B, TMED9, PROP1, FAM153C, LOC728554, DOK3, PDLIM7) 0.447973062195605 13 0.0327423899946858 0.714535982074404 723 0.203465891593002 2 1 1 -8.40193709885806 LTS-036 chr5 177551155 177575997 24843 * c(N4BP3, RMND5B) 0 1 NA 0.700718780933039 105 0.154109567487579 2 2 0 -5.76471491472907 LTS-036 chr5 177575998 177675217 99220 * c(HNRNPAB, NHP2, GMCL1P1, PHYKPL, COL23A1) 0.205336143559294 9 0.241927732552053 0.748910212580375 251 0.197687786280846 2 2 0 -6.77632283906245 LTS-036 chr5 177675218 177683377 8160 * COL23A1 0.35 1 NA 0.759629493907296 31 0.107642129099109 2 2 0 -5.76586490757577 LTS-036 chr5 177683378 179203933 1520556 * c(ZNF354B, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPH1, ZNF879, CLK4, CBY3, ZNF354A, AACSP1, ZFP2, RUFY1, CANX, COL23A1, ADAMTS2, MAML1) 0.351116509492933 54 0.137631243507345 0.725839023862969 1594 0.202532130483917 2 1 1 -6.77264758870961 LTS-036 chr5 179203934 179264731 60798 * c(MIR1229, MGAT4B, LTC4S, C5orf45, SQSTM1, MAML1) 0 1 NA 0.707539439858186 201 0.134939578702831 2 2 0 -5.76471571813913 LTS-036 chr5 179264732 179734200 469469 * c(TBC1D9B, RASGEF1C, MIR340, C5orf45, RNF130, MAPK9, SQSTM1, GFPT2) 0.00154735717854259 17 0.0038233031607268 0.759090020467362 651 0.217802834661807 20 20 0 -18.5325610322351 LTS-036 chr5 179734201 179744009 9809 * GFPT2 0.452 1 NA 0.80433601695915 23 0.29163268087332 2 2 0 -5.76533900561122 LTS-036 chr5 179744010 180374817 630808 * c(HEIH, OR2Y1, FLT4, MGAT1, CNOT6, ZFP62, LINC00847, BTNL8, SCGB3A1, GFPT2) 0.35976324549153 9 0.156741825943173 0.730147199403967 626 0.147931979991324 2 1 1 -6.7546209099128 LTS-036 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.531 1 NA NA NA NA NA LTS-036 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) 0.42104 2 0.0721248916810278 1.31364022575878 65 0.229171068955385 4 2 2 -6.88325403902493 LTS-036 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 0.9 1 NA NA NA NA NA LTS-036 chr5 180430826 180670251 239426 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD96A, TRIM7, TRIM41) 0.42301599081293 9 0.155637488343194 0.713139943762877 473 0.170032167411449 2 1 1 -6.76906113039897 LTS-036 chr5 180670252 180688111 17860 * c(RACK1, SNORD95, TRIM52) NA 0 NA 0.663381961464877 67 0.175521565600795 2 NA NA -5.76646057011342 LTS-036 chr6 203389 203397 9 * character(0) 0 1 NA 2.611 1 NA NA NA NA NA LTS-036 chr6 203398 367484 164087 * DUSP22 0.378209387335731 7 0.0384942791049466 0.767997417119933 119 0.122828941490524 2 1 1 -6.78212562172429 LTS-036 chr6 367485 391716 24232 * character(0) NA 0 NA 2.125 1 NA NA NA NA NA LTS-036 chr6 391717 408833 17117 * IRF4 0.126829847493581 2 0.0502045814642449 0.942183074911051 80 0.288712759667696 2 2 0 -6.79972362727268 LTS-036 chr6 408834 410608 1775 * IRF4 0.063 1 NA 0.910836395339199 37 0.333789721348753 3 3 0 -5.76445336043847 LTS-036 chr6 410609 29797553 29386945 * c(TMEM170B, SCARNA27, ZSCAN16-AS1, TFAP2A-AS1, LOC100130357, LOC100131289, LINC00240, LOC100270746, MIR3143, RANBP9, SLC17A4, MIR3691, LOC100506207, ELOVL2-AS1, LINC01012, LOC100507194, GMDS-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR4645, MIR5689, SLC17A2, PRSS16, BTN3A3, BTN2A2, ECI2, HMGN4, TRIM38, CAP2, SCGN, FARS2, SLC17A3, RPP40, BTN3A2, BTN3A1, BTN2A1, HUS1B, NRSN1, SNRNP48, MBOAT1, HDGFL1, LINC01600, NA NA NA NA NA NA NA NA NA LTS-036 DSP, E2F3, EDN1, SERPINB1, PIP5K1P1, F13A1, ZSCAN12P1, HIST1H2AA, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, SERPINB9P1, ZSCAN23, NKAPL, TOB2P1, FAM217A, FOXF2, FOXC1, SIRT5, RNF144B, HIST1H2BA, GPX6, OR2B6, FAM50B, GCNT2, GMDS, GMPR, GPLD1, LINC01622, LY86-AS1, CAGE1, LOC285819, MYLIP, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 HIST1H1A, HFE, HIVEP1, ID4, MYLK4, ZNF391, TUBB2B, C6orf52, KAAG1, IRF4, JARID2, NHLRC1, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, PSMG4, LINC01011, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, HCG11, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, SERPINB6, SERPINB9, GFOD1, BTN2A3P, ELOVL2, CDKAL1, PAK1IP1, CARMIL1, EXOC2, ACOT13, PRL, WRNIP1, LYRM4, MRS2, RREB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, ZSCAN31, PPP1R3G, ZNF192P1, BMP6, SLC17A1, SOX4, BPHL, SSR1, MIR548A1, BTN1A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, DEK, ALDH5A1, ZNF322, ZKSCAN3, ZSCAN16, TXNDC5, C6orf62, OR2B2, TMEM14B, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, RIOK1, DTNBP1, CMAHP, PGBD1, ADTRP, HIST1H2AH, HIST1H2BK, RIPK1, PRPF4B, HIST1H3F, HIST1H2AG, HIST1H2BJ, GCM2, CD83, POM121L2, FOXQ1, CDYL, LY86, EEF1E1, FAM65B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ZSCAN12, KIAA0319, NUP153) 0.0956071408861019 387 0.0753043997439571 0.957548999551966 15225 0.351866817683645 3 3 0 -6.78493241273429 LTS-036 NA NA NA NA LTS-036 chr6 29797554 29797639 86 * character(0) 0 1 NA 1.28044129572029 3 0.462532521379128 4 4 0 -5.76441048784695 LTS-036 chr6 29797640 30121460 323821 * character(0) 0.017144132151619 37 0.0501555987311894 0.996542686156298 427 2.10533420966104 15 15 0 -6.83963332453965 LTS-036 chr6 30121461 30121605 145 * character(0) 0.116 1 NA 1.73369635153406 3 1.03348794542236 6 6 0 -5.76441013999984 LTS-036 chr6 30121606 31930462 1808857 * character(0) 0.126420311345083 272 0.0575084000008117 0.976232561337412 5768 0.623881626190289 3 3 0 -6.81330538500598 LTS-036 chr6 31930463 31976440 45978 * character(0) NA 0 NA 0.939034251388176 252 0.28651152931674 3 NA NA -5.76486462831709 LTS-036 chr6 31976441 31977391 951 * character(0) 0.454 1 NA 1.9512751500365 7 0.601315502322477 7 7 0 -5.76441132901096 LTS-036 chr6 31977392 31996520 19129 * character(0) NA 0 NA 1.85147742545824 41 0.671114438098593 6 NA NA -5.76449466636159 LTS-036 chr6 31996521 32011714 15194 * character(0) 0.294834713471959 11 0.131363479081378 0.99134422243954 118 0.338088199432328 4 3 1 -6.73756862933842 LTS-036 chr6 32011715 32013690 1976 * character(0) 0.084 1 NA 0.88557881295118 21 0.368803896787594 3 3 0 -5.76448940389255 LTS-036 chr6 32013691 32412809 399119 * character(0) 0.106415701820346 53 0.0641344062181752 1.0097089641687 1391 0.274184758791146 3 3 0 -6.7373067318072 LTS-036 chr6 32412810 32427927 15118 * character(0) NA 0 NA 1.0892969345704 11 0.0727203860375792 3 NA NA -5.78571834645382 LTS-036 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 1.412 1 NA NA NA NA NA LTS-036 chr6 32485401 32485527 127 * HLA-DRB5 0.361 1 NA 2.07784558152218 3 0.680967938550218 7 7 0 -5.76441033806868 LTS-036 chr6 32485528 32498118 12591 * HLA-DRB5 0.296480877167532 27 0.15926767055241 1.81581961593148 66 1.07203636388938 7 5 2 -6.73480489440704 LTS-036 chr6 32498119 32546466 48348 * HLA-DRB5 NA 0 NA 0.432 1 NA NA NA NA NA LTS-036 chr6 32546467 32549344 2878 * HLA-DRB5 0.185208199919911 15 0.0962834110223316 0.781972374344422 55 0.502260735539467 7 6 1 -6.74021668163819 LTS-036 chr6 32549345 32549348 4 * HLA-DRB5 NA 0 NA 1.168 1 NA NA NA NA NA LTS-036 chr6 32549349 32557506 8158 * HLA-DRB5 0.258033671079984 20 0.159321786265869 1.52719289882624 55 0.919147737655032 9 7 2 -6.73788068152303 LTS-036 chr6 32557507 32557606 100 * HLA-DRB5 0.139 1 NA 0.815382403400315 12 0.342243699722873 2 2 0 -5.76441864096129 LTS-036 chr6 32557607 32605371 47765 * c(HLA-DQA1, HLA-DRB5) 0.0829179907483369 16 0.0286285842006435 1.81619047672806 26 2.65060012159801 4 4 0 -6.73398370736533 LTS-036 chr6 32605372 32605416 45 * HLA-DQA1 NA 0 NA 0.605 1 NA NA NA NA NA LTS-036 chr6 32605417 32610997 5581 * HLA-DQA1 0.10017815869252 39 0.0510841305501237 0.61913595949255 114 0.983812326334765 3 3 0 -6.73963774071182 LTS-036 chr6 32610998 32611003 6 * HLA-DQA1 0.163 1 NA 1.795 1 NA NA NA NA NA LTS-036 chr6 32611004 32629859 18856 * HLA-DQA1 0.135580767423983 16 0.0650407244219599 0.759784062710116 85 0.661381269369937 2 2 0 -6.7397856162071 LTS-036 chr6 32629860 32629889 30 * character(0) 0.116 1 NA 0.371 1 NA NA NA NA NA LTS-036 chr6 32629890 32634408 4519 * character(0) 0.14887942174488 3 0.0820751687986893 0.539217789906232 49 0.550777216001776 2 2 0 -6.73744132860795 LTS-036 chr6 32634409 33035512 401104 * character(0) 0.09331095774331 58 0.101658312907416 0.98083562164051 806 0.806661286371833 3 3 0 -6.74130431384629 LTS-036 chr6 33035513 33054760 19248 * character(0) 0.165935032681251 4 0.0216544837543329 2.09295986959007 128 23.2878253594642 20 17 3 -6.73320800107735 LTS-036 chr6 33054761 50811239 17756479 * c(LOC100131047, LINC01512, TOMM6, ANKRD66, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4647, MIR4641, MIR4642, MIR4462, MIR5690, RCAN2, CDKN1A, CRISP3, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, CAPN11, NUDT3, STK38, BTBD9, FOXP4, KLHDC3, SLC26A8, IP6K3, CLPS, TAF8, C6orf141, MAPK14, CCDC167, CRISP1, PTCRA, DNAH8, TCTE1, SLC29A1, FANCE, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, TREML5P, NA NA NA NA NA NA NA NA NA LTS-036 ADCY10P1, OARD1, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, ADGRF2, TSPO2, UNC5CL, KCTD20, PXT1, LHFPL5, SCUBE3, ENPP4, FKBP5, CMTR1, CUL9, ANKS1A, UBR2, DAAM2, GLTSCR1L, CD2AP, MTCH1, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, SPDEF, YIPF3, USP49, MDGA1, ADGRF1, BRPF3, GNMT, TNFRSF21, GLO1, GLP1R, LOC285847, PNPLA1, TREML4, RPL7L1, GRM4, GUCA1A, GUCA1B, PRICKLE4, PACSIN1, HMGA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 HSP90AB1, CLPSL1, TREML1, TREML3P, SLC35B2, ITPR3, CLPSL2, C6orf222, GLYATL3, LINC00336, RAB44, LINC00951, CRIP3, MDFI, MEA1, MEP1A, MLN, MOCS1, C6orf226, TMEM151B, ATP6V0CP3, PTCHD4, GGNBP1, MUT, RPL10A, NFKBIE, NFYA, DEF6, MRPL2, CYP39A1, ETV7, PPIL1, PEX6, PGC, PGK2, PIM1, CLIC5, TREM2, TREM1, POLH, PPARD, GTPBP2, UHRF1BP1, CENPQ, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TBC1D22B, SAYSD1, TRERF1, MAPK13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 LRFN2, AARS2, XPO5, PTK7, CPNE5, BAK1, ENPP5, PRPH2, RHAG, ZFAND3, RPS10, SRSF3, C6orf132, C6orf106, MRPL14, DLK2, SNRPC, SRF, SRPK1, TAF11, TBCC, MIR586, TCP11, TEAD3, TFAP2B, BYSL, CRISP2, TULP1, TDRG1, VEGFA, ZNF76, PLA2G7, TFEB, TREML2, TFAP2D, KCNK16, UQCC2, TTBK1, SUPT3H, RUNX2, KCNK5, RRP36, CCND3, KCNK17, ABCC10, KLC4, RNF8, TJAP1, NCR2, MED20, SLC25A27, POLR1C, MAD2L1BP, CUL7, CDC5L NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ) 0.0918960952090469 403 0.0805315838655942 0.983171588215751 18128 0.419103053799768 3 3 0 -6.75454987042251 LTS-036 NA NA NA NA LTS-036 chr6 50811240 57061345 6250106 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, BEND6, GSTA5, FAM83B, ICK, ZNF451, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, RAB23, PKHD1, HMGCLL1, LRRC1, KIAA1586, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, LOC730101, GSTA7P, COL21A1, GCM1, PAQR8, MLIP, BAG2, TRAM2) 0.0875755947168698 70 0.0840472902473935 0.936607517295336 4282 0.23176598093211 3 3 0 -6.86570848191867 LTS-036 chr6 57061346 57244672 183327 * c(RAB23, PRIM2) 0.409 1 NA 0.891664584619395 31 0.129575186792295 3 3 0 -5.8153325679069 LTS-036 chr6 57244673 57512678 268006 * PRIM2 0.344851511027938 49 0.072181643274799 0.922025857939885 108 0.251562647418737 3 2 1 -6.74766077654914 LTS-036 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.944152479657653 19 0.140256865443705 3 NA NA -5.79223174387945 LTS-036 chr6 62390154 62407067 16914 * KHDRBS2 0.146 1 NA 0.970005711401318 23 0.271887313904953 3 3 0 -5.76441270487325 LTS-036 chr6 62407068 71666775 9259708 * c(COL9A1, COL19A1, B3GAT2, SDHAF4, KHDRBS2, PHF3, EYS, LOC441155, SLC25A51P1, LGSN, LMBRD1, FAM135A, ADGRB3, SMAP1, PTP4A1) 0.122141904144694 54 0.078873799011523 0.959344449313127 2106 0.275916110669526 3 3 0 -6.7776500059474 LTS-036 chr6 71666776 71875250 208475 * B3GAT2 NA 0 NA 0.69 1 NA NA NA NA NA LTS-036 chr6 71875251 133015271 61140021 * c(LIN28B-AS1, TRAPPC3L, KHDC1L, TSTD3, LOC100287632, HMGN3-AS1, MIR2113, LOC100422737, MIR4282, LOC100506804, SMLR1, LINC01013, MIR4464, MIR4643, MIR5695, KCNQ5-AS1, LOC100996634, TRDN, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, CGA, SMPDL3A, PNRC1, ASCC3, BVES, SEC63, GTF3C6, MRAP2, RWDD2A, KLHL32, TMEM200A, MB21D1, NUS1, SLC16A10, CNR1, COL10A1, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CLVS2, TAAR1, NCOA7, HINT3, CD109, NA NA NA NA NA NA NA NA NA LTS-036 PM20D2, SRSF12, CTGF, SAMD3, RNF217, NKAIN2, KHDC3L, CFAP206, BVES-AS1, PRSS35, LCA5, EEF1A1, AIM1, EPB41L2, EPHA7, C6orf163, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, FOXO3, CDK19, MDN1, TSPYL4, UFL1, HEY2, ORC3, BRD7P3, FRK, VGLL2, LACE1, FYN, TMEM244, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, MTO1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ASF1A, PNISR, IBTK, MOXD1, SENP6, AMD1, FBXL4, SLC17A5, SNORD50A, GJA1, FILIP1, SESN1, GPR6, CEP57L1, PPIL6, LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, TAAR6, HSF2, HTR1B, HTR1E, DPPA5, RSPH4A, C6orf58, IMPG1, GJB7, ARG1, KPNA5, SNHG5, NA, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LIN28B, LAMA2, LAMA4, MIR30A, MIR30C2, MARCKS, MAN1A1, ME1, OOEP, FAM26F, GSTM2P1, RFPL4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 MYO6, NT5E, HDDC2, CYB5R4, TUBE1, C6orf203, CDC40, RWDD1, UBE2J1, ENPP1, ENPP3, COQ3, PGM3, PLN, POU3F2, PHIP, SOBP, AKIRIN2, QRSL1, PREP, DDX43, FAM46A, PKIB, TMEM30A, ECHDC1, KCNQ5, RARS2, PDSS2, GOPC, SMIM8, LYRM2, SNX14, SERINC1, HACE1, BEND3, PTPRK, RRAGD, PRDM13, BCKDHB, REV3L, BACH2, TRMT11, RNY4, ROS1, FAM229B, PRDM1, LINC01590, POPDC3, TSG1, LOC643623, TRAF3IP2-AS1, CTAGE9, MICAL1, SIM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SMPD2, ELOVL4, MAP3K7, SNORD50B, MIR548B, NR2E1, TPBG, TPD52L1, TSPYL1, TTK, MCHR2-AS1, TPI1P3, METTL24, OR2A4, RNF217-AS1, OGFRL1, FAM184A, MANEA, LINC00472, KHDC1, GPR63, SPACA1, RNF146, TAAR8, SH3BGRL2, ARMC2, RPF2, STX7, L3MBTL3, MCHR2, FAXC, GJA10, RTN4IP1, RSPO3, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, VNN1, CCNC, WASF1, LINC01621, UBE3D, TAAR5, TBX18, MFSD4B, TAAR2, TAAR3, HMGN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ARHGAP18, MED23, FHL5, AKAP7, ATG5, KIAA0408, ZBTB24, SNAP91, FIG4, CASP8AP2) 0.127218268691501 444 0.0852662589748705 0.777840228643625 24944 0.244833318107887 2 2 0 -9.35878736252478 LTS-036 NA NA NA NA LTS-036 chr6 133015272 133035098 19827 * VNN1 0.107 1 NA 0.761193784073653 13 0.301587636623424 2 2 0 -5.76489266737006 LTS-036 chr6 133035099 135424203 2389105 * c(MIR3662, HBS1L, SLC18B1, LINC01312, SLC2A12, LINC01010, EYA4, LINC00326, HMGA1P7, VNN3, SNORA33, RPS12, SGK1, ALDH8A1, TCF21, VNN2, VNN1, TBPL1) 0.0393086325690446 33 0.0845162818274644 0.786011184878349 1123 0.192580075411827 2 2 0 -7.83088088570138 LTS-036 chr6 135424204 136582113 1157910 * c(LINC00271, MTFR2, PDE7B, MYB, AHI1, BCLAF1) 0.321 1 NA 0.778767743773374 651 0.442300904054069 2 2 0 -5.78910957092342 LTS-036 chr6 136582114 137113137 531024 * c(MAP3K5, MAP7, BCLAF1) 0.460518412335648 9 0.0887789076551657 0.7908931221411 398 0.184359971018563 2 1 1 -7.23089664076964 LTS-036 chr6 137113138 137143709 30572 * c(MAP3K5, PEX7) 0.228 1 NA 0.620515812924985 13 0.220217113147632 2 2 0 -5.77219879105948 LTS-036 chr6 137143710 150140529 12996820 * c(UST-AS1, LOC100130476, LOC100132735, NHEG1, MIR3145, MIR3668, GVQW2, LINC01277, LOC100507557, MIR4465, UST, CITED2, RAB32, KATNA1, GINM1, IL22RA2, ADAT2, STXBP5, LOC153910, ZC2HC1B, OLIG3, TXLNB, TAB2, SASH1, HEBP2, FUCA2, SHPRH, CCDC28A, PHACTR2-AS1, GRM1, HIVEP2, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, SUMO4, SAMD5, FLJ46906, NMBR, PCMT1, AIG1, VTA1, HECA, PEX7, PLAGL1, IL20RA, HYMAI, ADGRG6, ARFGEF3, NA NA NA NA NA NA NA NA NA LTS-036 NHSL1, ABRACL, PBOV1, PERP, LINC01625, RPS18P9, TNFAIP3, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, LATS1, PHACTR2) 0.113827067478187 111 0.0931077137268785 0.774293393254847 5796 0.19805995382305 2 2 0 -7.80104513426135 LTS-036 NA NA NA NA LTS-036 chr6 150140530 153309782 3169253 * c(RAET1E-AS1, RAET1E, RAET1L, ESR1, SYNE1, MTHFD1L, FBXO5, RAET1G, IYD, MTRF1L, RMND1, PLEKHG1, ZBTB2, RAET1K, VIP, ULBP3, ARMT1, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, LRP11, AKAP12) 0.102767216715575 62 0.0829585090589123 0.846869906643688 2743 0.63138011866634 3 3 0 -6.82573750514314 LTS-036 chr6 153309783 153309881 99 * MTRF1L NA 0 NA 0.734 1 NA NA NA NA NA LTS-036 chr6 153309882 167787489 14477608 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, UNC93A, NA NA NA NA NA NA NA NA NA LTS-036 MTRF1L, AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.131087303074195 204 0.0992540150790937 0.80100983169631 6892 0.809548878032535 2 2 0 -6.90192788098955 LTS-036 NA NA NA NA LTS-036 chr6 167787490 167787505 16 * TCP10 NA 0 NA 0.306 1 NA NA NA NA NA LTS-036 chr6 167787506 167789266 1761 * TCP10 0.188 1 NA 0.215471188942771 48 0.117889230073726 0 0 0 -5.76480016907215 LTS-036 chr6 167789267 167794761 5495 * TCP10 0.152326528276842 3 0.0803513119577604 0.560394207824737 41 0.399838404858763 2 2 0 -6.74334157042559 LTS-036 chr6 167794762 167796264 1503 * TCP10 NA 0 NA 1.081 1 NA NA NA NA NA LTS-036 chr6 167796265 170070848 2274584 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.140414585426614 35 0.067161876440871 0.849470115235289 1128 0.210116398885252 3 3 0 -7.42373363291027 LTS-036 chr6 170070849 170890384 819536 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.141568117017224 17 0.0706221303425325 0.747388840310476 625 0.182640372176356 2 2 0 -6.7595567440254 LTS-036 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.717319683485502 45 0.17389664583983 2 NA NA -5.76441025562495 LTS-036 chr7 193047 228659 35613 * FAM20C 0.464 1 NA 0.91201550622002 50 0.190505343007186 3 3 0 -5.7669714729819 LTS-036 chr7 228660 5632550 5403891 * c(WI2-2373I1.2, RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, SUN1, TFAMP1, WIPI2, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, RBAKDN, ELFN1, LFNG, RNF216P1, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, PAPOLB, FAM20C, RBAK, ACTB, ZNF890P, FSCN1, MIR589, MAFK, MICALL2, FBXL18, TTYH3, NA NA NA NA NA NA NA NA NA LTS-036 MAD1L1, PSMG3, C7orf50, CARD11, TNRC18, EIF3B, ZFAND2A, COX19, AP5Z1) 0.412325367878562 152 0.113536233991926 0.95105408996629 5073 0.243145319204886 3 2 1 -6.92611224704082 LTS-036 NA NA NA NA LTS-036 chr7 5632551 5660686 28136 * c(RNF216, FSCN1) 0 1 NA 0.960056066619406 83 0.196270570738447 3 3 0 -5.76450402096638 LTS-036 chr7 5660687 5926027 265341 * c(RNF216-IT1, ZNF815P, RNF216, OCM) 0 1 NA 0.908835464231215 182 0.262429672791233 3 3 0 -5.77554417573659 LTS-036 chr7 5926028 5937949 11922 * character(0) NA 0 NA 0.631 1 NA NA NA NA NA LTS-036 chr7 5937950 5952632 14683 * CCZ1 0.031 1 NA 0.459888631177535 48 0.179350641153773 1 1 0 -5.76441281281277 LTS-036 chr7 5952633 5958446 5814 * CCZ1 NA 0 NA 0.726 1 NA NA NA NA NA LTS-036 chr7 5958447 6071115 112669 * c(ANKRD61, RSPH10B, EIF2AK1, CCZ1, PMS2, AIMP2) 0.129211255122397 7 0.179233951928226 0.893992147406696 242 0.381651066089225 3 3 0 -6.7471634136423 LTS-036 chr7 6071116 6189906 118791 * c(ANKRD61, EIF2AK1, USP42) 0.484 1 NA 0.881899580084527 177 0.17847630453777 3 3 0 -5.78650336350477 LTS-036 chr7 6189907 6805469 615563 * c(KDELR2, DAGLB, GRID2IP, PMS2CL, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, USP42, FAM220A, CYTH3) 0.320434591186098 22 0.209001522395499 0.910208512142937 973 0.276768834643357 3 2 1 -6.7694069492174 LTS-036 chr7 6805470 6819291 13822 * RSPH10B2 NA 0 NA 0.304 1 NA NA NA NA NA LTS-036 chr7 6819292 6844723 25432 * c(CCZ1B, RSPH10B2) NA 0 NA 0.53861978568608 51 0.288900562308142 1 NA NA -5.76915419152738 LTS-036 chr7 6844724 6845570 847 * CCZ1B NA 0 NA 1.891 1 NA NA NA NA NA LTS-036 chr7 6845571 6865853 20283 * CCZ1B 0.439666452395443 3 0.11642307904077 1.59798861817976 39 0.501594184621277 6 3 3 -6.86373321804202 LTS-036 chr7 6865854 6865910 57 * CCZ1B NA 0 NA 0.505 1 NA NA NA NA NA LTS-036 chr7 6865911 10492909 3626999 * c(LOC100131257, GLCCI1, PER4, CCZ1B, NXPH1, ICA1, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.405409531170343 11 0.138895906085358 0.885047355586902 739 0.21950394265051 3 2 1 -7.20817891590951 LTS-036 chr7 10492910 10971628 478719 * NDUFA4 0 1 NA 1.31965354846068 5 1.15772738587286 4 4 0 -5.76542008885605 LTS-036 chr7 10971629 11675855 704227 * c(THSD7A, NDUFA4, PHF14) 0.1637223531637 9 0.240692230867554 0.932060360154275 361 0.220115426189112 3 3 0 -6.78525177771687 LTS-036 chr7 11675856 11871787 195932 * THSD7A 0.46 1 NA 0.880966004176407 25 0.228752326035533 3 3 0 -5.78706514502242 LTS-036 chr7 11871788 12428803 557016 * c(VWDE, THSD7A, TMEM106B) 0.424051132119784 29 0.0977312591486384 0.894324306682342 333 0.339833275083016 2 1 1 -6.96745825817936 LTS-036 chr7 12428804 12443542 14739 * VWDE 0 1 NA 0.942217326925489 21 0.202146882006035 3 3 0 -5.76465143035962 LTS-036 chr7 12443543 16816000 4372458 * c(ISPD-AS1, LRRC72, ARL4A, DGKB, ETV1, VWDE, SOSTDC1, TSPAN13, BZW2, AGMO, MEOX2, ANKMY2, ISPD, SCIN) 0.273089394256381 32 0.208471046957017 0.910878638138538 1052 0.222402733852365 3 2 1 -7.04966516859792 LTS-036 chr7 16816001 16823095 7095 * TSPAN13 0.434 1 NA 0.898257125000567 15 0.143682420968044 3 3 0 -5.76576831029317 LTS-036 chr7 16823096 17920613 1097518 * c(AGR2, AGR3, AHR, SNX13, TSPAN13) 0.447704790698686 15 0.0363082045037443 0.867483952202282 456 0.197131057195971 2 1 1 -8.70765569720964 LTS-036 chr7 17920614 17932932 12319 * SNX13 0 1 NA 0.963351817334252 55 0.272856743903468 3 3 0 -5.76442261007255 LTS-036 chr7 17932933 19813202 1880270 * c(MIR3146, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, TWIST1, HDAC9) 0.256663180079185 15 0.22594451489143 0.946287608323006 523 0.253591250851962 3 2 1 -6.85413907215538 LTS-036 chr7 19813203 20177819 364617 * c(TMEM196, MACC1) 0.476 1 NA 1.00776881953424 30 0.193018577510995 3 3 0 -5.77113690409495 LTS-036 chr7 20177820 21932044 1754225 * c(MACC1-AS1, SP8, RPL23P8, ABCB5, MACC1, ITGB8, SP4, DNAH11) 0.401153812350065 36 0.165252733329939 0.891464631315741 1023 0.230511019975191 3 2 1 -6.93649132252736 LTS-036 chr7 21932045 21932317 273 * DNAH11 0 1 NA 0.955852769241519 7 0.432496022552589 3 3 0 -5.76441045044911 LTS-036 chr7 21932318 22533452 601135 * c(STEAP1B, CDCA7L, DNAH11, RAPGEF5) 0.222815078730755 13 0.238707121267024 0.911494868344548 417 0.24916065126225 3 3 0 -6.90077546051543 LTS-036 chr7 22533453 22771038 237586 * c(LOC100506178, STEAP1B, IL6) 0.475 1 NA 0.8926810823793 41 0.17424761257419 3 3 0 -5.80006118263978 LTS-036 chr7 22771039 23191664 420626 * c(KLHL7-AS1, IL6, TOMM7, KLHL7, SNORD93, FAM126A) 0.437821117455402 10 0.0339288471166744 0.828363759148689 282 0.16546927121924 2 1 1 -8.11420488335704 LTS-036 chr7 23191665 23210870 19206 * KLHL7 0 1 NA 0.967736575359095 27 0.210260156314346 3 3 0 -5.76442172721864 LTS-036 chr7 23210871 23240596 29726 * c(NUPL2, KLHL7) 0.0357970501888624 9 0.141801308566286 0.929275291918714 109 0.169503677753615 4 4 0 -6.84943587620943 LTS-036 chr7 23240597 23286131 45535 * NUPL2 0.438 1 NA 0.837822061047908 3 0.391323821576624 3 3 0 -5.76846575591104 LTS-036 chr7 23286132 23390952 104821 * c(GPNMB, IGF2BP3, MALSU1) 0.146803798104397 20 0.231978963429196 0.908113957062816 260 0.441536836271197 2 2 0 -6.75134181345439 LTS-036 chr7 23390953 23530498 139546 * c(IGF2BP3, RPS2P32) 0.474 1 NA 0.860147597097325 47 0.217444107463252 3 3 0 -5.79174413337388 LTS-036 chr7 23530499 26237068 2706570 * c(RNU6-16P, CLK2P1, C7orf31, DFNA5, RPS2P32, OSBPL3, TRA2A, HNRNPA2B1, FAM221A, MIR148A, NPY, MPP6, CYCS, STK31, NPVF, CCDC126, NFE2L3) 0.379711061998352 24 0.166849559071395 0.910008870948206 995 0.335572072258717 3 2 1 -6.81509646128766 LTS-036 chr7 26237069 26253018 15950 * c(CBX3, HNRNPA2B1) 0.243135725327324 4 0.232467022750898 0.682650806436797 67 0.184369918499684 1 1 0 -6.78277438340256 LTS-036 chr7 26253019 26385950 132932 * c(CBX3, SNX10) NA 0 NA 0.893 1 NA NA NA NA NA LTS-036 chr7 26385951 27202289 816339 * c(HOXA-AS3, HOTAIRM1, HOXA10-HOXA9, C7orf71, SNX10, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, LOC441204, SKAP2, KIAA0087) 0.342449263341233 27 0.168197516504866 0.909095246784922 646 0.194249274809853 3 2 1 -6.79671064729125 LTS-036 chr7 27202290 27203139 850 * c(HOXA10-HOXA9, HOXA9) 0 1 NA 1.07043646339279 19 0.140373895042336 3 3 0 -5.76463948788318 LTS-036 chr7 27203140 28319007 1115868 * c(JAZF1-AS1, HOTTIP, HOXA10-HOXA9, HOXA10-AS, HIBADH, EVX1, HOXA11-AS, JAZF1, HOXA9, HOXA10, HOXA11, HOXA13, MIR196B, TAX1BP1) 0.144027532983757 11 0.231794030827527 0.946807783166597 655 0.215559930512712 3 3 0 -6.76148693728573 LTS-036 chr7 28319008 28319234 227 * character(0) 0.41 1 NA 0.878474556269331 3 0.00251661147842359 3 3 0 -5.98518184831748 LTS-036 chr7 28319235 29160604 841370 * c(LOC100506497, CPVL, CREB5, TRIL) 0.361393407337416 9 0.155308116694238 0.995589039027402 394 0.242699197790932 3 2 1 -6.73897958770303 LTS-036 chr7 29160605 29433356 272752 * c(CHN2, CPVL) 0 1 NA 0.986476249660247 52 0.276948712520055 3 3 0 -5.76474404391975 LTS-036 chr7 29433357 29945597 512241 * c(MIR550A3, CHN2, PRR15, DPY19L2P3, WIPF3, LOC646762) 0.225743736499774 14 0.236379002804887 0.964287009432195 249 0.292726093492933 3 3 0 -6.88540754937635 LTS-036 chr7 29945598 29955117 9520 * WIPF3 0.485 1 NA 0.904897016072933 25 0.175609652354305 3 3 0 -5.76541887103719 LTS-036 chr7 29955118 29963247 8130 * c(WIPF3, SCRN1) 0.442487962125536 9 0.152104404932928 0.907429685627817 116 0.219336725892718 2 1 1 -6.82373933571087 LTS-036 chr7 29963248 29986984 23737 * SCRN1 0 1 NA 0.970152773186879 35 0.170433594352855 3 3 0 -5.76441868231666 LTS-036 chr7 29986985 30544360 557376 * c(MIR550B1, NOD1, DKFZP586I1420, MTURN, ZNRF2, FKBP14, MIR550A1, GGCT, PLEKHA8, SCRN1) 0.176054752329701 12 0.217819410187764 0.926819990420574 582 0.256258947022297 3 3 0 -6.80841522904504 LTS-036 chr7 30544361 30634333 89973 * c(GARS, LOC401320, GGCT) 0.413 1 NA 0.733624947839066 6 0.227202479446565 2 2 0 -5.76500511034646 LTS-036 chr7 30634334 30876362 242029 * c(INMT-FAM188B, INMT, CRHR2, GARS, LOC401320, FAM188B) 0.325345322061392 19 0.183116857841464 0.976461910651884 313 0.203824129744999 3 2 1 -6.74632841524759 LTS-036 chr7 30876363 31149283 272921 * c(INMT-FAM188B, ADCYAP1R1, GHRHR, AQP1, FAM188B) 0.366249526699219 9 0.133583723226713 1.38076885677539 403 0.348108817557317 5 3 2 -6.74407329235587 LTS-036 chr7 31149284 31149902 619 * ADCYAP1R1 0 1 NA 1.65570485989917 17 0.399724160405353 6 6 0 -5.76441694202008 LTS-036 chr7 31149903 31151099 1197 * ADCYAP1R1 NA 0 NA 1.36622794733716 25 0.241379024219863 5 NA NA -5.76450272114318 LTS-036 chr7 31151100 31377018 225919 * character(0) NA 0 NA 0.971 1 NA NA NA NA NA LTS-036 chr7 31377019 31697993 320975 * c(CCDC129, NEUROD6) 0.0234059948427748 4 0.238 1.08010423138664 183 0.239677334940969 4 4 0 -6.82871924338468 LTS-036 chr7 31697994 31731983 33990 * c(PPP1R17, CCDC129) NA 0 NA 0.815 1 NA NA NA NA NA LTS-036 chr7 31731984 31826996 95013 * c(PPP1R17, PDE1C) 0.232935256112098 7 0.257785902307654 0.973890666596988 185 0.24176074619731 4 3 1 -6.81587562451847 LTS-036 chr7 31826997 31848706 21710 * PDE1C 0.478 1 NA 0.931089164113845 71 0.237028296369185 3 3 0 -5.76488530864185 LTS-036 chr7 31848707 32535437 686731 * c(LOC100130673, AVL9, LSM5, PDE1C) 0.466092911499596 9 0.028542852773408 0.966057892559289 202 0.20444431553307 4 2 2 -10.1575686182495 LTS-036 chr7 32535438 32624811 89374 * c(DPY19L1P1, AVL9) 0 1 NA 0.970151767164977 97 0.21100944181738 3 3 0 -5.76443114182978 LTS-036 chr7 32624812 32909182 284371 * c(DPY19L1P1, MIR550B2, AVL9, KBTBD2, LINC00997, ZNRF2P1, MIR550A2) 0.143619330824666 9 0.245040302807518 0.90883070865265 153 0.203120785262298 3 3 0 -6.76760071040966 LTS-036 chr7 32909183 32956941 47759 * c(AVL9, KBTBD2, RP9P) 0 1 NA 0.994626446894984 46 1.62119886813688 3 3 0 -5.76441482353206 LTS-036 chr7 32956942 34194102 1237161 * c(FKBP9, BMPER, AVL9, BBS9, RP9P, NT5C3A, RP9) 0.470014973990434 9 0.0365460136144985 0.923057447070463 487 0.331345922471791 2 1 1 -9.34613733387676 LTS-036 chr7 34194103 34685696 491594 * c(BMPER, NPSR1-AS1) 0 1 NA 1.0776682561918 29 0.157454395618247 3 3 0 -5.8832126953191 LTS-036 chr7 34685697 35180667 494971 * c(DPY19L1, NPSR1, NPSR1-AS1, DPY19L2P1) 0.0819314596676712 14 0.167501369520398 0.963595187004715 282 0.306854145723065 3 3 0 -6.74500944824341 LTS-036 chr7 35180668 35414453 233786 * c(LOC401324, DPY19L2P1, TBX20) 0.469 1 NA 0.90631952443449 61 0.166835135073767 3 3 0 -5.79059295123812 LTS-036 chr7 35414454 36445856 1031403 * c(KIAA0895, LOC401324, ANLN, HERPUD2, EEPD1, SEPT7) 0.448649753943391 10 0.0564033095955666 0.869535988398855 494 0.169060399112063 2 1 1 -8.13693489934243 LTS-036 chr7 36445857 36446121 265 * ANLN 0 1 NA 1.2827890927328 5 0.430303148954316 4 4 0 -5.76441152562961 LTS-036 chr7 36446122 37990222 1544101 * c(MIR1200, AOAH-IT1, AOAH, GPR141, NME8, ANLN, EPDR1, SFRP4, ELMO1) 0.197958072847631 16 0.22543224222221 0.865838410403116 636 0.230958479497335 3 3 0 -7.06515618411499 LTS-036 chr7 37990223 38253923 263701 * c(EPDR1, STARD3NL) 0.447 1 NA 0.921441093399464 39 0.252212704503739 3 3 0 -5.77211430834973 LTS-036 chr7 38253924 38764732 510809 * c(TRG-AS1, VPS41, AMPH, FAM183BP, TARP, STARD3NL) 0.333026667702645 28 0.187245428593332 0.985799788115977 430 0.563107807148815 3 2 1 -6.73972629812253 LTS-036 chr7 38764733 38765476 744 * VPS41 0.421 1 NA 0.985157311255468 17 0.200146472100104 3 3 0 -5.76441152375302 LTS-036 chr7 38765477 42005678 3240202 * c(POU6F2-AS1, POU6F2, MPLKIP, VPS41, GLI3, INHBA-AS1, LINC00265, INHBA, YAE1D1, RALA, LOC646999, SUGCT, CDK13) 0.444744032311094 27 0.0435566239185211 0.927464264231706 1020 0.226005571605091 3 2 1 -8.74088280633734 LTS-036 chr7 42005679 42088222 82544 * GLI3 0 1 NA 1.00417798611862 62 0.264012896200407 3 3 0 -5.76506220246816 LTS-036 chr7 42088223 44185656 2097434 * c(MIR3943, LOC100506895, URGCP-MRPS24, MIR4649, AEBP1, HECW1, LINC00957, GCK, GLI3, POLM, SPDYE1, DBNL, RASA4CP, UBE2D4, PGAM2, POLD2, URGCP, COA1, PSMA2, MYL7, BLVRA, MRPS24, MRPL32, C7orf25, POLR2J4, STK17A) 0.0350829812961217 30 0.134125387381472 0.94655538639685 1375 0.855890059342991 3 3 0 -6.89430462403537 LTS-036 chr7 44185657 44189393 3737 * GCK 0.446 1 NA 0.875207169657978 13 0.12740904246781 3 3 0 -5.76599567003635 LTS-036 chr7 44189394 45016621 827228 * c(YKT6, TMED4, NUDCD3, GCK, NPC1L1, OGDH, DDX56, PPIA, PURB, MYO1G, CAMK2B, ZMIZ2, H2AFV) 0.404147412201021 41 0.12768670213628 0.925271515182895 1476 0.194990649938544 3 2 1 -6.86366771935073 LTS-036 chr7 45016622 45120248 103627 * c(NACAD, SNHG15, MYO1G, SNORA9, CCM2) 0 1 NA 0.983563091757956 113 0.203278256635414 3 3 0 -5.76454744100021 LTS-036 chr7 45120249 45758649 638401 * c(RAMP3, ADCY1, NACAD, SNORA5B, SNORA5C, TBRG4) 0.186526680595339 13 0.239737302810752 0.936809295746231 457 0.181132749521056 3 3 0 -6.81905980447549 LTS-036 chr7 45758650 45759262 613 * ADCY1 0.485 1 NA 0.82510589411129 15 0.0727665543266371 2 2 0 -5.76579573398007 LTS-036 chr7 45759263 47481602 1722340 * c(ADCY1, IGFBP1, IGFBP3, SEPT7P2, TNS3) 0.401819716956983 20 0.188391103544559 0.973292289175492 463 0.233835594853946 3 2 1 -6.7736945244129 LTS-036 chr7 47481603 47520850 39248 * TNS3 0 1 NA 1.02340207689855 7 0.097103773650373 3 3 0 -5.77046373924085 LTS-036 chr7 47520851 48311658 790808 * c(C7orf57, ABCA13, PKD1L1, SUN3, HUS1, C7orf65, TNS3, UPP1, C7orf69, LINC00525) 0.142344001842034 25 0.207679705315661 0.93423254303857 793 0.231898619869953 3 3 0 -6.76756800393589 LTS-036 chr7 48311659 48312490 832 * ABCA13 0.439 1 NA 0.946091970044965 17 0.169492711972417 3 3 0 -5.76442502359442 LTS-036 chr7 48312491 48352698 40208 * ABCA13 0.463731971895528 13 0.0348069769015587 0.915651316635756 165 0.116579997371503 2 1 1 -8.95947590169663 LTS-036 chr7 48352699 48467355 114657 * ABCA13 0 1 NA 1.02795967884116 97 0.184924754828697 3 3 0 -5.77020606654162 LTS-036 chr7 48467356 48965435 498080 * c(ABCA13, CDC14C) 0.212651559158739 13 0.243298460795873 0.956871852288683 191 0.225397338759017 3 3 0 -6.84963699365742 LTS-036 chr7 48965436 50198966 1233531 * c(C7orf72, ZPBP, CDC14C, VWC2) 0.459 1 NA 0.842335029804197 158 0.209947463510497 3 3 0 -6.10013740679154 LTS-036 chr7 50198967 56132122 5933156 * c(DDC-AS1, EGFR-AS1, IKZF1, DDC, EGFR, VSTM2A, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, ZNF713, FKBP9P1, LINC01446, MRPS17, LANCL2, PSPH, FIGNL1, SNORA15, VOPP1, CCT6A) 0.356852007887075 62 0.182065750758219 0.920322425696615 2037 0.204979397769785 3 2 1 -6.99588172180082 LTS-036 chr7 56132123 56136194 4072 * c(SUMF2, PSPH) 0 1 NA 1.34762987634753 3 0.545487243969402 4 4 0 -5.76447608620933 LTS-036 chr7 56136195 56879608 743414 * c(DKFZp434L192, SUMF2, NUPR2, CHCHD2, PHKG1, PSPH, LOC650226) 0.276275017186579 4 0.23168009553405 0.956440870620349 145 0.211830416341366 3 2 1 -6.80084988909691 LTS-036 chr7 56879609 57069754 190146 * LOC100130849 NA 0 NA 1.311 1 NA NA NA NA NA LTS-036 chr7 57069755 57532512 462758 * c(MIR3147, ZNF716, GUSBP10, ZNF479) 0.139983001473079 8 0.220896832739371 1.08912586054099 108 0.293747963324137 3 3 0 -6.78757215669987 LTS-036 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.45599646955983 13 0.378892160424004 5 NA NA -5.76441173349911 LTS-036 chr7 62758725 63023528 264804 * ZNF733P 0.49 1 NA 0.950012763831569 7 0.747352151328434 3 3 0 -5.76459010844381 LTS-036 chr7 63023529 64657672 1634144 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.334599325432428 26 0.189924944689697 0.909376273586277 616 0.233109183623921 3 2 1 -6.82280971725601 LTS-036 chr7 64657673 64670065 12393 * character(0) NA 0 NA 0.575 1 NA NA NA NA NA LTS-036 chr7 64670066 65150775 480710 * c(ZNF92, LOC441242, INTS4P2) 0.374621000690954 5 0.07717706913326 0.68806633721456 84 0.113136588026159 2 1 1 -6.77977946972005 LTS-036 chr7 65150776 65154685 3910 * c(LOC441242, INTS4P2) NA 0 NA 1.04 1 NA NA NA NA NA LTS-036 chr7 65154686 65423589 268904 * c(VKORC1L1, LOC441242, CCT6P1, INTS4P2, SNORA22) 0.447812956627144 3 0.053925875050851 1.11117956841794 119 0.996731122181159 4 2 2 -7.45879552977189 LTS-036 chr7 65423590 65552792 129203 * c(GUSB, ASL) 0 1 NA 0.957666015589023 117 0.208831560568931 3 3 0 -5.76493168868442 LTS-036 chr7 65552793 66774604 1221812 * c(MIR4650-2, KCTD7, CRCP, RABGEF1, LINC00174, ASL, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, STAG3L4, GTF2IRD1P1, TPST1) 0.0422669377271659 16 0.123554306548443 0.935363342123603 645 0.213402873960652 3 3 0 -6.91154323748525 LTS-036 chr7 66774605 66785714 11110 * STAG3L4 0.496 1 NA 0.823739923006947 21 0.135823642657536 2 2 0 -5.7714542114423 LTS-036 chr7 66785715 71488831 4703117 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17, STAG3L4, CALN1) 0.277421733660295 6 0.248430003555663 0.996542923289816 523 0.242390739000137 3 2 1 -6.81207195245475 LTS-036 chr7 71488832 71571128 82297 * CALN1 NA 0 NA 0.654 1 NA NA NA NA NA LTS-036 chr7 71571129 72912936 1341808 * c(MIR4650-1, TRIM50, SBDSP1, NSUN5P2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, NCF1B, FZD9, CALN1, FKBP6, BAZ1B, POM121) 0.22855485106449 7 0.218425752885985 0.871424500399673 657 0.36241685368804 3 3 0 -6.9936559640938 LTS-036 chr7 72912937 72984300 71364 * c(TBL2, BAZ1B, BCL7B) 0 1 NA 1.17092106585589 89 0.389762403726333 4 4 0 -5.7651409251619 LTS-036 chr7 72984301 73085983 101683 * c(VPS37D, TBL2, MLXIPL) 0.435 1 NA 1.13533167594886 202 0.299006468382499 4 4 0 -5.76897142742217 LTS-036 chr7 73085984 73969418 883435 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, LIMK1, RFC2, STX1A, MIR590, EIF4H, CLIP2, LAT2, ABHD11, DNAJC30, GTF2IRD1) 0.350849391383512 33 0.142644251814637 1.13148744606554 1145 0.235265558595056 4 2 2 -6.83554759484409 LTS-036 chr7 73969419 74489486 520068 * c(GTF2I, NA, STAG3L2, PMS2P5, NCF1, RCC1L, GTF2IRD2, GTF2IRD1) 0 1 NA 1.14988400229051 169 0.232159954265609 4 4 0 -5.79188911829494 LTS-036 chr7 74489487 74824327 334841 * c(GTF2IP1, GTF2IRD2B, NCF1C, GATSL2, RCC1L) 0 1 NA 1.07959364919156 44 0.234675291840498 3 3 0 -5.80265006839866 LTS-036 chr7 74824328 75023458 199131 * c(GTF2IP1, STAG3L1, GATSL2) NA 0 NA 0.874 1 NA NA NA NA NA LTS-036 chr7 75023459 75216164 192706 * c(POM121C, NSUN5P1, HIP1, TRIM73, SPDYE5, PMS2P3, STAG3L1) 0.0335999534744988 10 0.0689376529916707 0.973994704523098 390 0.278588146272516 4 4 0 -7.11433659447212 LTS-036 chr7 75216165 75368110 151946 * HIP1 0.441 1 NA 1.00051045958652 22 0.273980882197141 3 3 0 -5.76527171039725 LTS-036 chr7 75368111 75696606 328496 * c(MIR4651, CCL26, HIP1, MDH2, STYXL1, POR, RHBDD2, CCL24, SNORA14A, TMEM120A) 0.297222233609434 15 0.185379867402302 0.930336441702104 375 0.199430057360886 3 2 1 -6.79664020933852 LTS-036 chr7 75696607 75957644 261038 * c(SRRM3, HSPB1, YWHAG) 0 1 NA 1.00565578593297 177 0.238445866612469 3 3 0 -5.76718858053617 LTS-036 chr7 75957645 76984572 1026928 * c(PMS2P9, LOC100133091, FGL2, DTX2, SSC4D, POMZP3, DTX2P1-UPK3BP1-PMS2P11, GSAP, CCDC146, FDPSP2, YWHAG, ZP3, UPK3B) 0.153905134387107 28 0.210002654934087 0.901528594383896 695 0.256078727424507 3 3 0 -6.82103584162736 LTS-036 chr7 76984573 77200392 215820 * c(GSAP, PTPN12) 0.469 1 NA 0.940807318848773 83 0.218421007252166 3 3 0 -5.76771253999499 LTS-036 chr7 77200393 77648671 448279 * c(APTR, RSBN1L, PHTF2, PTPN12, TMEM60, MAGI2) 0.467916803817223 10 0.0232512843133927 0.88867905137144 413 0.18946419927975 2 1 1 -10.8674529294721 LTS-036 chr7 77648672 77789403 140732 * MAGI2 0 1 NA 0.959783821406229 43 0.249176864163894 3 3 0 -5.76471289137314 LTS-036 chr7 77789404 87229501 9440098 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, TP53TG1, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, ABCB1, ABCB4, CROT, CACNA2D1, TMEM243, CD36, SEMA3E, MAGI2, DMTF1) 0.275565319094709 43 0.222484458874666 0.947902703236844 2762 0.214065851971087 3 2 1 -6.89538722999225 LTS-036 chr7 87229502 87459951 230450 * c(RUNDC3B, ABCB1) 0 1 NA 0.915744886174889 67 0.193707831815699 3 3 0 -5.7784922929697 LTS-036 chr7 87459952 87828204 368253 * c(DBF4, RUNDC3B, ADAM22, SLC25A40) 0 11 0 0.92063203296049 509 0.255144396574777 0 0 0 -Inf LTS-036 chr7 87828205 87835469 7265 * c(ADAM22, SRI) 0.469 1 NA 0.924437592840308 107 0.175745549943122 3 3 0 -5.76479820681425 LTS-036 chr7 87835470 91632306 3796837 * c(LOC101409256, AKAP9, C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, CDK14, SRI, STEAP4, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.400449204578493 36 0.149191748356864 0.928280842722548 1375 0.290649964283941 3 2 1 -6.856321699804 LTS-036 chr7 91632307 91725996 93690 * AKAP9 0 1 NA 0.932842881360127 210 0.248797702078578 3 3 0 -5.76611954571836 LTS-036 chr7 91725997 92138760 412764 * c(AKAP9, CYP51A1, LRRD1, PEX1, ANKIB1, GATAD1, KRIT1) 0.0765296718800246 9 0.213697215704838 0.891907218205022 663 0.195906934703754 3 3 0 -6.79370203041444 LTS-036 chr7 92138761 92236164 97404 * c(CDK6, FAM133B, PEX1, RBM48, NA) 0.492 1 NA 0.867114238811198 243 0.174179759580202 3 3 0 -5.79042277634145 LTS-036 chr7 92236165 95499264 3263100 * c(MIR4652, CDK6, BET1, COL1A2, DYNC1I1, SAMD9L, PEG10, HEPACAM2, GNG11, GNGT1, PDK4, ASB4, PON1, PON2, PON3, SAMD9, PPP1R9A, VPS50, MIR489, CASD1, MIR653, TFPI2, CALCR, SGCE) 0.341715803683858 52 0.174064267313411 0.912870097250982 2329 0.185029286368467 3 2 1 -6.96800609104957 LTS-036 chr7 95499265 99129502 3630238 * c(MIR3609, LOC100506136, ATP5J2-PTCD1, ARPC1B, SLC25A13, ARPC1A, CPSF4, PDAP1, BHLHA15, DLX5, DLX6, DYNC1I1, TMEM130, LMTK2, ZKSCAN5, BRI3, TECPR1, PTCD1, DLX6-AS1, ZNF789, MGC72080, C7orf76, KPNA7, ASNS, NPTX2, OCM2, BAIAP2L1, SDHAF3, SMURF1, TAC1, MIR591, SHFM1, TRRAP, ZNF394, MYH16, BUD31, ATP5J2) 0.261234498970241 30 0.217171567326785 0.995471425983449 2561 0.229104167471718 3 2 1 -6.85670745882562 LTS-036 chr7 99129503 100276657 1147155 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR4658, CYP3A7-CYP3A51P, STAG3, COPS6, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, PPP1R35, GPC2, NYAP1, ZKSCAN5, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GJC3, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, AZGP1, MOSPD3, AZGP1P1, CYP3A43, TAF6, TFR2, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, NA NA NA NA NA NA NA NA NA LTS-036 GAL3ST4, OR2AE1, TSC22D4, TRIM4, AP4M1) 0.364671464530022 59 0.151734033203701 0.928113639223212 3097 0.194571003277804 3 2 1 -6.7792337181238 LTS-036 NA NA NA NA LTS-036 chr7 100276658 100278282 1625 * c(GNB2, GIGYF1) 0.008 1 NA 0.685312237734443 7 0.386887088241026 2 2 0 -5.76442289261642 LTS-036 chr7 100278283 100318668 40386 * c(POP7, EPO, GIGYF1) 0.236532656232444 2 0.343653895656662 0.953868269740156 180 0.194794132763047 4 3 1 -6.78912803386186 LTS-036 chr7 100318669 100366284 47616 * c(EPO, ZAN) 0 8 0 1.07169203425877 188 0.26578894189537 0 0 0 -Inf LTS-036 chr7 100366285 100377259 10975 * ZAN 0.427 1 NA 1.00565393252517 41 0.182806241554329 3 3 0 -5.76460892657158 LTS-036 chr7 100377260 100615533 238274 * c(MUC12, EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.352150297442894 153 0.11189119795086 1.01247926331618 846 0.283879913473437 3 2 1 -6.73567247314742 LTS-036 chr7 100615534 100624718 9185 * MUC12 0 1 NA 0.955194845199705 9 0.38503863442517 3 3 0 -5.76442457928712 LTS-036 chr7 100624719 100692680 67962 * c(MUC12, MUC17) 0.000827348187451369 13 0.00582435206036491 1.10870660273982 323 0.235780401205118 20 20 0 -11.7420934908822 LTS-036 chr7 100692681 100695058 2378 * MUC17 0.496 1 NA 1.01769798066441 13 0.151590668476759 3 3 0 -5.7645284887658 LTS-036 chr7 100695059 100781445 86387 * c(MUC17, SERPINE1, TRIM56) 0.321218068338562 10 0.185031528844861 0.97292347364845 166 0.203796001846817 3 2 1 -6.75026171286025 LTS-036 chr7 100781446 100781615 170 * SERPINE1 0.441 1 NA 0.906567542303913 3 0.245214871762162 3 3 0 -5.76441886773308 LTS-036 chr7 100781616 100818101 36486 * c(MIR4653, AP1S1, NAT16, SERPINE1, VGF) 0.190250266095189 9 0.199597998765296 0.90923042641797 183 0.291039981690098 2 2 0 -6.78191810466473 LTS-036 chr7 100818102 100855107 37006 * c(MOGAT3, NAT16, PLOD3) 0.497 1 NA 0.989703042460217 117 0.190862116408957 3 3 0 -5.7645618233296 LTS-036 chr7 100855108 101961863 1106756 * c(MIR4285, ZNHIT1, SH2B2, COL26A1, CUX1, CLDN15, FIS1, IFT22, PLOD3, MYL10) 0.360892215651042 34 0.181595368599018 0.984176130643892 880 0.227917474025989 3 2 1 -6.73559841444254 LTS-036 chr7 101961864 101961999 136 * SH2B2 NA 0 NA 0.621 1 NA NA NA NA NA LTS-036 chr7 101962000 102742554 780555 * c(RASA4B, LOC100289561, SPDYE2B, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, SH2B2, LRWD1, FAM185A, FBXL13, NAPEPLD, POLR2J2, POLR2J, ALKBH4, POLR2J3, SPDYE6, PRKRIP1, ORAI2, ARMC10) 0.355903563425425 20 0.201063874375651 0.917685762544329 781 0.265422370332342 3 2 1 -6.75684851885426 LTS-036 chr7 102742555 102945020 202466 * c(RPL19P12, NAPEPLD, DPY19L2P2, PMPCB) NA 0 NA 0.952641015706068 123 0.190338302325799 3 NA NA -5.76609074708492 LTS-036 chr7 102945021 102948039 3019 * PMPCB NA 0 NA 1.195 1 NA NA NA NA NA LTS-036 chr7 102948040 102952123 4084 * PMPCB 0 1 NA 1.22635097378223 15 0.191373780360643 4 4 0 -5.76441159359772 LTS-036 chr7 102952124 103848604 896481 * c(DNAJC2, SLC26A5, ORC5, RELN, PSMC2, PMPCB) 0.0197165315815749 12 0.117753852153421 1.11987212823547 836 0.270122990999913 4 4 0 -6.9711070225183 LTS-036 chr7 103848605 104110406 261802 * LHFPL3 0.401 1 NA 0.952401767138605 17 0.19768948467974 3 3 0 -5.76646998678222 LTS-036 chr7 104110407 106799997 2689591 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, CCDC71L, ATXN7L1, CDHR3, LHFPL3, PIK3CG, PUS7, PRKAR2B, KMT2E, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2) 0.386122763951649 22 0.129190628974081 1.05969794580134 1396 0.25494720943894 3 2 1 -6.94381008395156 LTS-036 chr7 106799998 106801088 1091 * PRKAR2B 0 1 NA 1.0970284109802 23 0.176990229961928 4 4 0 -5.76469157387561 LTS-036 chr7 106801089 108215230 1414142 * c(COG5, DUS4L, THAP5, DLD, SLC26A3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LAMB1, DNAJB9, NRCAM, PNPLA8, SLC26A4, PRKAR2B, BCAP29, CBLL1) 0.205309225947863 33 0.209994606712851 1.07632485169536 1783 0.251074354653237 3 3 0 -6.99710211327544 LTS-036 chr7 108215231 109599770 1384540 * c(C7orf66, DNAJB9, EIF3IP1) 0.442 1 NA 1.15540799278548 35 0.184495510181985 4 4 0 -5.86353181978868 LTS-036 chr7 109599771 117308413 7708643 * c(MIR3666, CFTR, ZNF277, ASZ1, BMT2, TFEC, TES, LSMEM1, MDFIC, ST7-OT4, IFRD1, LINC00998, MET, EIF3IP1, GPR85, LRRN3, PPP1R3A, TMEM168, WNT2, ST7, CAPZA2, IMMP2L, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3, FOXP2, DOCK4) 0.335099112085407 69 0.162245844264945 1.04959465231706 2740 0.50938534403568 3 2 1 -6.83743380106612 LTS-036 chr7 117308414 117400576 92163 * c(CFTR, CTTNBP2) 0 1 NA 1.14339654053731 105 0.214195978524615 4 4 0 -5.77112986555861 LTS-036 chr7 117400577 123179787 5779211 * c(AASS, FAM3C, FEZF1-AS1, IQUB, RNF133, TSPAN12, KCND2, RNF148, FEZF1, TAS2R16, WNT16, LSM8, ING3, ANKRD7, PTPRZ1, SLC13A1, CPED1, CTTNBP2, CADPS2) 0.123445207111327 46 0.189721597455489 1.05076427170408 1928 0.248013882225666 3 3 0 -7.04492085764517 LTS-036 chr7 123179788 123264804 85017 * c(ASB15, NDUFA5) 0.471 1 NA 1.08204344289199 117 0.400653179302836 3 3 0 -5.76791002906707 LTS-036 chr7 123264805 129126783 5861979 * c(LOC100130705, ASB15, C7orf77, MGC27345, ZNF800, FLNC, AHCYL2, TNPO3, HYAL4, POT1, HYALP1, SND1, SND1-IT1, TPI1P2, GPR37, GRM8, HILPDA, FSCN3, TSPAN33, FAM71F2, IMPDH1, IRF5, KCP, ARF5, LEP, PRRT4, LINC01000, MIR129-1, LOC407835, LMOD2, PAX4, RBM28, METTL2B, STRIP2, OPN1SW, LRRC4, CCDC136, SMO, SPAM1, MIR592, MIR593, TMEM229A, GCC1, CALU, FAM71F1, WASL, ATP6V1F) 0.321611579336034 71 0.159204438125048 1.09119661916289 3406 0.277975409410984 3 2 1 -7.29043714302702 LTS-036 chr7 129126784 129127129 346 * STRIP2 NA 0 NA 1.422 1 NA NA NA NA NA LTS-036 chr7 129127130 130038435 911306 * c(SMKR1, RNA5SP244, CPA1, CPA2, SSMEM1, KLHDC10, MIR182, MIR183, MIR96, NRF1, CPA4, ZC3HC1, STRIP2, UBE2H, TMEM209, CPA5, CEP41) 0.344580659519919 29 0.189802451099425 1.30049288744019 942 0.308494836998332 4 2 2 -6.77659517205793 LTS-036 chr7 130038436 130038439 4 * CEP41 NA 0 NA 1.047 1 NA NA NA NA NA LTS-036 chr7 130038440 134891961 4853522 * c(TSGA13, KLF14, LRGUK, AKR1B1, COPG2, FLJ40288, WDR91, MESTIT1, AGBL3, LINC-PINT, MIR29A, MIR29B1, MEST, MKLN1, AKR1B15, MIR335, PODXL, CHCHD3, TMEM140, AKR1B10, EXOC4, NA, BPGM, C7orf49, CALD1, SLC35B4, PLXNA4, CEP41) 0.346322318223839 58 0.107329376122413 1.07894437460223 2341 0.220896188546931 3 2 1 -7.30054128043552 LTS-036 chr7 134891962 134895532 3571 * WDR91 0.004 1 NA 0.994564531015985 17 0.36524513323649 3 3 0 -5.76441699875062 LTS-036 chr7 134895533 135421790 526258 * c(NUP205, SLC13A4, WDR91, STRA8, FAM180A, CNOT4, C7orf73) 0.205940299633813 11 0.184650628337557 1.06887739349095 607 0.370673132009837 4 3 1 -6.90126720810839 LTS-036 chr7 135421791 136701308 1279518 * c(CHRM2, LOC349160, FAM180A, MIR490, LUZP6) 0.403 1 NA 1.07739948527868 143 0.258798084112677 3 3 0 -5.87839708690413 LTS-036 chr7 136701309 138363767 1662459 * c(LOC100130880, MIR4468, CHRM2, SVOPL, LOC349160, PTN, CREB3L2, AKR1D1, TRIM24, DGKI) 0.383283508601096 22 0.132102315063066 1.06362560635786 947 0.246440178659015 3 2 1 -6.88922595922029 LTS-036 chr7 138363768 138417718 53951 * c(SVOPL, ATP6V0A4) 0.01 1 NA 1.11588256845352 37 0.237844423878236 4 4 0 -5.77002079950097 LTS-036 chr7 138417719 138519610 101892 * c(TMEM213, ATP6V0A4, KIAA1549) 0.107163224072628 10 0.194434336245199 1.12552708525843 217 0.28256341561739 4 4 0 -6.74808867627232 LTS-036 chr7 138519611 138519683 73 * KIAA1549 0.458 1 NA 0.943673448045677 3 0.159001048214574 3 3 0 -5.76441186793483 LTS-036 chr7 138519684 141783220 3263537 * c(LOC100129148, JHDM1D-AS1, NDUFB2-AS1, TMEM178B, C7orf55-LUC7L2, OR9A4, PRSS37, CLEC2L, FMC1, CLEC5A, MKRN1, UBN2, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, TAS2R3, TAS2R4, LUC7L2, MRPS33, TAS2R5, AGK, ZC3HAV1, KIAA1147, TAS2R38, KIAA1549, PARP12, BRAF, SSBP1, TBXAS1, TTC26, KDM7A, SLC37A3, MGAM, ADCK2, ZC3HAV1L) 0.300794905806582 64 0.161887710170862 1.06101831492914 3477 0.226030547197545 3 2 1 -7.06088651649374 LTS-036 chr7 141783221 141794263 11043 * MGAM 0 1 NA 1.17690054056441 30 0.138381514943871 4 4 0 -5.76513669271204 LTS-036 chr7 141794264 142119831 325568 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.0415491025163181 12 0.152485071301085 1.08015152489573 485 0.275354647166052 4 4 0 -6.82261282617931 LTS-036 chr7 142119832 142131779 11948 * character(0) 0.257 1 NA 1.06645171926038 23 0.27839841215303 3 3 0 -5.76516690935359 LTS-036 chr7 142131780 142499836 368057 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.296380947880701 52 0.131608500908232 1.27652548378768 369 2.99975663326926 4 3 1 -6.73441680523208 LTS-036 chr7 142499837 142568934 69098 * EPHB6 0.007 1 NA 1.10295381592825 133 0.204859510401764 4 4 0 -5.77649623922992 LTS-036 chr7 142568935 143020944 452010 * c(CLCN1, OR9A2, C7orf34, TMEM139, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, CASP2, OR6W1P) 0.0504602003533522 15 0.121107783557025 1.08369601470917 724 0.24788867272846 4 4 0 -6.84944629550493 LTS-036 chr7 143020945 143036318 15374 * CLCN1 0.493 1 NA 1.06569688124322 43 0.194871616311493 3 3 0 -5.76636623313855 LTS-036 chr7 143036319 143305591 269273 * c(CLCN1, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX, FAM131B) 0.355027221408187 10 0.175847914087398 1.06515202630291 443 0.270621915931413 3 2 1 -6.75066110882363 LTS-036 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.113386730236922 39 0.0969673832497557 0 NA NA -6.07177614180464 LTS-036 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.733 1 NA NA NA NA NA LTS-036 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.349423309039567 16 0.176891633493504 1.09964135542345 288 0.53793791143742 3 2 1 -6.74656932725869 LTS-036 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.481 1 NA NA NA NA NA LTS-036 chr7 143883365 143974096 90732 * c(OR2A7, ARHGEF35, ARHGEF34P) 0.315 1 NA 0.439552944695771 58 0.285884573583795 1 1 0 -5.76559041059865 LTS-036 chr7 143974097 143975446 1350 * ARHGEF34P NA 0 NA 1.729 1 NA NA NA NA NA LTS-036 chr7 143975447 144074299 98853 * c(ARHGEF34P, ARHGEF5) 0.37365144139486 3 0.0657596634216853 0.641834566861233 102 0.382940130395455 2 1 1 -6.75514301983211 LTS-036 chr7 144074300 148725750 4651451 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, EZH2, CNTNAP2, TPK1, ARHGEF5, CUL1, PDIA4) 0.332647455157189 34 0.138053336459735 1.08170269111891 892 0.421532512622524 3 2 1 -6.91285933880551 LTS-036 chr7 148725751 148801658 75908 * c(ZNF786, ZNF425, PDIA4) 0 1 NA 1.04693744286522 115 0.214176487530334 3 3 0 -5.76955208391213 LTS-036 chr7 148801659 149518041 716383 * c(ZNF783, ZNF425, LOC155060, ZNF746, ZNF467, SSPO, ZNF777, ZNF398, ZNF212, ZNF767P, ZNF282, KRBA1) 0.223112427339477 34 0.191224769985406 1.11583048320834 1387 1.86418204351455 5 4 1 -6.74933358153234 LTS-036 chr7 149518042 149523195 5154 * SSPO 0.01 1 NA 1.0598939912695 65 0.288809825637244 3 3 0 -5.76467350937078 LTS-036 chr7 149523196 150071156 547961 * c(RNU6-34P, ZBED6CL, ATP6V0E2, SSPO, REPIN1, ATP6V0E2-AS1, RARRES2, ZNF862, ACTR3C, LRRC61) 0.000557098755725493 9 0.00133333333333333 1.06215977433938 655 0.231012605611159 20 20 0 -23.7901552638546 LTS-036 chr7 150071157 150094851 23695 * ZNF775 0.274 1 NA 0.99797683273553 30 0.149227143073521 3 3 0 -5.76478093526248 LTS-036 chr7 150094852 154989054 4894203 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, GIMAP8, CRYGN, GALNTL5, GIMAP7, GIMAP1, DPP6, PAXIP1-AS1, FABP5P3, PAXIP1, AOC1, GIMAP2, GBX1, ZNF775, LINC00996, ATG9B, TMEM176B, HTR5A, WDR86, KCNH2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, LOC728743, XRCC2, MIR671, NA NA NA NA NA NA NA NA NA LTS-036 TMUB1, ASIC3) 0.308080467072243 120 0.15687779236302 1.08652737024297 3918 0.249779126139217 3 2 1 -7.29475987304289 LTS-036 NA NA NA NA LTS-036 chr7 154989055 154989982 928 * character(0) 0 1 NA 1.30484046466381 7 0.190392952050427 4 4 0 -5.76446063070123 LTS-036 chr7 154989983 156452389 1462407 * c(C7orf13, RNF32, RBM33, EN2, CNPY1, LOC285889, INSIG1, LINC00244, SHH) 0.0663792481943578 29 0.178976441193982 1.07468870178297 885 0.285466529332376 3 3 0 -6.86317984668533 LTS-036 chr7 156452390 156469096 16707 * RNF32 0.344 1 NA 1.17693052721586 23 0.250244955092819 4 4 0 -5.76474592314566 LTS-036 chr7 156469097 156754981 285885 * c(RNF32, LMBR1, NOM1) 0.32228160381639 17 0.132019411451498 1.01207319635981 235 0.225389923150348 3 2 1 -6.76945017803937 LTS-036 chr7 156754982 156762224 7243 * NOM1 0 1 NA 1.01062135725891 41 0.177774545490602 3 3 0 -5.76459522839489 LTS-036 chr7 156762225 157209551 447327 * c(DNAJB6, MNX1, NOM1, MNX1-AS1, UBE3C) 0.0463073152109547 14 0.151511958690968 1.10991457106558 372 0.331750996452489 4 4 0 -6.79563812054839 LTS-036 chr7 157209552 157261258 51707 * DNAJB6 0.422 1 NA 1.02772658110874 29 0.223810302989246 3 3 0 -5.76618070427811 LTS-036 chr7 157261259 158930775 1669517 * c(LOC100506585, MIR5707, LINC00689, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, MIR595, VIPR2) 0.223383135836689 23 0.195961438491082 1.05944000784691 970 1.07906960578142 4 3 1 -6.82137468254412 LTS-036 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 1.11359869465817 19 0.215616266244005 4 NA NA -5.77694290946672 LTS-036 chr8 182757 182934 178 * ZNF596 0.471 1 NA 0.743539241113492 3 0.1067895125937 2 2 0 -5.76442307525528 LTS-036 chr8 182935 6389889 6206955 * c(LOC100287015, TDRP, ERICH1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.317400942122822 84 0.134209012179086 0.811719637480594 2030 0.21668714740293 2 1 1 -7.91824037666751 LTS-036 chr8 6389890 6420574 30685 * c(ANGPT2, MCPH1) 0 1 NA 0.875042509817359 15 1.30842308942955 3 3 0 -5.76453407553742 LTS-036 chr8 6420575 6794207 373633 * c(MIR4659A, MIR4659B, GS1-24F4.2, DEFA4, DEFA6, DEFB1, ANGPT2, XKR5, AGPAT5, MCPH1) 0.165429614506835 13 0.211329309190838 0.88676020309912 254 0.348859678503478 3 3 0 -6.79755324093842 LTS-036 chr8 6794208 6913031 118824 * c(DEFA1, DEFA4, DEFA5, DEFT1P, DEFA8P, DEFA9P, DEFA10P, DEFA11P, DEFA1B) 0.387 1 NA 0.880766198251801 11 0.144889801385241 3 3 0 -5.79874429148052 LTS-036 chr8 6913032 7305471 392440 * c(FAM66B, ZNF705G, DEFB4B, DEFA5, USP17L1, USP17L4) 0.391 1 NA 1.12428018136651 24 1.5188473026026 4 4 0 -5.76526587588954 LTS-036 chr8 7305472 7308043 2572 * character(0) NA 0 NA 0.366 1 NA NA NA NA NA LTS-036 chr8 7308044 7752099 444056 * c(DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.45293442128655 3 0.0613297100379036 0.577336709060673 97 0.297822315941657 2 1 1 -7.53124804751526 LTS-036 chr8 7752100 7752140 41 * character(0) 0.2 1 NA 5.3 1 NA NA NA NA NA LTS-036 chr8 7752141 11172396 3420256 * c(FAM66E, ZNF705B, MIR1322, MIR548I3, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, DEFB4A, PRSS55, C8orf74, FAM86B3P, XKR6, USP17L8, MIR124-1, MSRA, PINX1, USP17L3, MTMR9, MIR597, MIR598, PPP1R3B, SOX7, TNKS, ERI1, MFHAS1, RP1L1) 0.34951359707341 87 0.104998797106181 0.82739101835321 1752 1.67399055799321 3 2 1 -6.75303209658637 LTS-036 chr8 11172397 11173444 1048 * MTMR9 0 1 NA 1.03729018469976 5 0.166357446481965 3 3 0 -5.76449947932555 LTS-036 chr8 11173445 11204184 30740 * c(TDH, MTMR9, SLC35G5) 0.135406065677079 10 0.191805572853809 0.830943151580512 240 0.835899461672519 2 2 0 -6.73441795736729 LTS-036 chr8 11204185 11281273 77089 * c(TDH, FAM167A, FAM167A-AS1) 0.447 1 NA 0.877879144244238 61 0.155699995262011 3 3 0 -5.78502291703447 LTS-036 chr8 11281274 13357729 2076456 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, CTSB, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, FAM167A, LINC00208, FAM167A-AS1, FAM86B1, LONRF1) 0.337298078484107 60 0.117451810048274 0.806075663131689 1107 0.202608626804712 2 1 1 -7.22522511269237 LTS-036 chr8 13357730 25216620 11858891 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, DLC1, ADAM28, LZTS1, VPS37A, NKX2-6, SGCZ, PEBP4, C8orf48, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, FGF20, GFRA2, ADAMDEC1, LOC286059, MICU3, LOC286114, CNOT7, LOC389641, LOXL2, LPL, MIR320A, ASAH1, MSR1, NEFM, NEFL, NKX3-1, MIR383, PCM1, ZDHHC2, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PIWIL2, INTS10, PPP3CC, NA NA NA NA NA NA NA NA NA LTS-036 CSGALNACT1, HR, BIN3, MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, STC1, NUDT18, TUSC3, DOCK5, BIN3-IT1, REEP4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, CHMP7, ENTPD4, PHYHIP) 0.387637777057741 187 0.153754246799713 0.630158848893643 7169 0.411369210364744 2 1 1 -7.35488360377812 LTS-036 NA NA NA NA LTS-036 chr8 25216621 25222165 5545 * DOCK5 0.407 1 NA 0.594693006960916 9 0.147529658035257 2 2 0 -5.76969849253776 LTS-036 chr8 25222166 25237963 15798 * c(PPP2R2A, DOCK5) 0.123605842398658 9 0.216519693741188 0.688306742176873 89 0.258783427521065 2 2 0 -6.73779175115178 LTS-036 chr8 25237964 25257531 19568 * c(PPP2R2A, DOCK5) 0.497 1 NA 0.682018768230681 37 0.188959375648962 2 2 0 -5.76520230024576 LTS-036 chr8 25257532 25747365 489834 * c(CDCA2, GNRH1, KCTD9, PPP2R2A, EBF2, DOCK5) 0.461376058745942 18 0.0377818384976359 0.613262509823234 423 0.144576132725245 2 1 1 -8.853120233122 LTS-036 chr8 25747366 26212026 464661 * c(PPP2R2A, EBF2) NA 0 NA 0.655088252075134 76 0.405788956469964 2 NA NA -5.77790393981909 LTS-036 chr8 26212027 26240637 28611 * c(PPP2R2A, BNIP3L) 0.31 1 NA 0.944850429061997 95 0.223139155834966 3 3 0 -5.76473298652668 LTS-036 chr8 26240638 26723156 482519 * c(PNMA2, ADRA1A, DPYSL2, BNIP3L) 0.238841780279299 12 0.124749810226369 0.970404174801814 405 0.23878193788766 4 3 1 -7.10906463702298 LTS-036 chr8 26723157 26906455 183299 * character(0) NA 0 NA 0.554 1 NA NA NA NA NA LTS-036 chr8 26906456 27147790 241335 * c(TRIM35, STMN4) 0.490079406154119 4 0.00678232998312531 0.63113650336374 173 0.110748234270369 2 1 1 -18.6028699527263 LTS-036 chr8 27147791 27151591 3801 * TRIM35 NA 0 NA 0.929 1 NA NA NA NA NA LTS-036 chr8 27151592 27436212 284621 * c(CHRNA2, EPHX2, PTK2B, TRIM35) 0.193889037590843 10 0.19168249210029 0.79259659468872 420 0.248725861209785 2 2 0 -6.80406820794721 LTS-036 chr8 27436213 27454470 18258 * CLU NA 0 NA 0.598 1 NA NA NA NA NA LTS-036 chr8 27454471 27455442 972 * CLU 0 1 NA 0.607045274546598 21 0.268690058653177 2 2 0 -5.76463127189718 LTS-036 chr8 27455443 27462481 7039 * CLU 0.458 1 NA 0.664038486823179 25 0.18676667261586 2 2 0 -5.76510569935546 LTS-036 chr8 27462482 27737180 274699 * c(MIR3622A, MIR3622B, CLU, ESCO2, SCARA5, SCARA3, CCDC25, PBK) 0.448443599684349 17 0.0347716289016001 0.626816610367609 453 0.176401064399576 2 1 1 -8.36393129838465 LTS-036 chr8 27737181 27762021 24841 * c(MIR4287, SCARA5) 0 1 NA 0.635084864565435 15 0.217299880568854 2 2 0 -5.76898104118646 LTS-036 chr8 27762022 28431200 669179 * c(MIR4288, FBXO16, SCARA5, NUGGC, PNOC, ELP3, ZNF395, FZD3) 0.193473163143377 19 0.221068206775157 0.636628143879275 747 0.187260474179924 2 2 0 -6.92006455896573 LTS-036 chr8 28431201 28574803 143603 * c(EXTL3, FZD3) 0.474 1 NA 0.617234447670473 57 0.147494681523417 2 2 0 -5.85095510884808 LTS-036 chr8 28574804 35092979 6518176 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, UNC5D, DUSP4, EXTL3, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, PURG, NRG1, SARAF, PPP2CB, INTS9, TEX15, LINC00589, MBOAT4, WRN, DUSP26, HMBOX1, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.396452147314107 47 0.139228434207122 0.612775870728003 2439 0.143353802583229 2 1 1 -9.54156316928442 LTS-036 chr8 35092980 35092985 6 * UNC5D NA 0 NA 1.137 1 NA NA NA NA NA LTS-036 chr8 35092986 38940659 3847674 * c(ERLIN2, PROSC, GOT1L1, UNC5D, LETM2, ADRB3, KCNU1, EIF4EBP1, HTRA4, FGFR1, DDHD2, ADGRA2, LSM1, RNF5P1, C8orf86, WHSC1L1, BRF2, PLEKHA2, STAR, TACC1, LOC728024, ZNF703, RAB11FIP1, TM2D2, PLPP5, ADAM9, ASH2L, BAG4) 0.314130406702316 31 0.122307201803096 0.815438783450957 2949 0.208027264528854 2 1 1 -7.7108568315881 LTS-036 chr8 38940660 38947517 6858 * ADAM9 NA 0 NA 0.406 1 NA NA NA NA NA LTS-036 chr8 38947518 38975686 28169 * c(ADAM32, ADAM9) 0 1 NA 0.488670131982601 62 0.238735371775209 1 1 0 -5.76561806796033 LTS-036 chr8 38975687 38987009 11323 * ADAM32 NA 0 NA 1.009 1 NA NA NA NA NA LTS-036 chr8 38987010 40389547 1402538 * c(LOC100130964, ADAM3A, IDO2, ADAM32, ADAM2, ADAM5, IDO1, C8orf4, ZMAT4, ADAM18) 0.373176466465322 14 0.123955947509899 1.04634505174938 581 0.281528680746691 3 2 1 -6.80317697177481 LTS-036 chr8 40389548 40389654 107 * ZMAT4 NA 0 NA 1.075 1 NA NA NA NA NA LTS-036 chr8 40389655 41391704 1002050 * c(GOLGA7, SFRP1, ZMAT4, GINS4) 0.452883497237977 9 0.0315968528671941 1.1594730330131 228 0.254887026546817 4 2 2 -8.73675575987796 LTS-036 chr8 41391705 41400913 9209 * GINS4 0 1 NA 1.13141730756126 57 0.211968051571972 4 4 0 -5.7653034817477 LTS-036 chr8 41400914 41557101 156188 * c(GPAT4, NKX6-3, ANK1, MIR486-1, GINS4) 0.0724267026113538 10 0.189128527726517 1.20204065565282 476 0.250536369259997 4 4 0 -6.7360330451532 LTS-036 chr8 41557102 41559609 2508 * c(NKX6-3, ANK1) 0.399 1 NA 1.18196237186224 15 0.211552987846229 4 4 0 -5.76446812257314 LTS-036 chr8 41559610 42050811 491202 * c(AP3M2, NKX6-3, ANK1, PLAT, KAT6A) 0.29774341583254 16 0.19179710416653 1.14912625487988 589 0.287519734439895 4 3 1 -6.75125228595994 LTS-036 chr8 42050812 42128805 77994 * PLAT NA 0 NA 0.932 1 NA NA NA NA NA LTS-036 chr8 42128806 43047593 918788 * c(MIR4469, CHRNB3, SMIM19, HGSNAT, FNTA, DKK4, IKBKB, POLB, THAP1, SLC20A2, VDAC3, RNF170, POMK, HOOK3, CHRNA6) 0.108253747070097 6 0.158067074370344 0.8940233962236 1046 0.280452748872811 3 3 0 -6.78451981373129 LTS-036 chr8 43047594 43212050 164457 * c(HGSNAT, POTEA) NA 0 NA 0.99790840057201 143 0.268481549938432 3 NA NA -5.76520065543668 LTS-036 chr8 47752736 47759712 6977 * LINC00293 0.206 1 NA 1.28126854507602 23 0.202520442534251 4 4 0 -5.76456644637027 LTS-036 chr8 47759713 55537560 7777848 * c(LOC100287846, LYPLA1, CEBPD, PCMTD1, PXDNL, SPIDR, NPBWR1, MRPL15, FAM150A, MCM4, C8orf22, LINC00293, OPRK1, ATP6V1H, SNTG1, PRKDC, RP1, SOX17, SNAI2, TCEA1, UBE2V2, EFCAB1, RGS20, ST18, RB1CC1) 0.272088659150105 46 0.11818868889862 1.15698621883769 2594 0.283045417734289 4 3 1 -6.96897047760476 LTS-036 chr8 55537561 55539057 1497 * RP1 0 1 NA 1.19517074262182 31 0.286019985766842 4 4 0 -5.76442029078849 LTS-036 chr8 55539058 57302881 1763824 * c(SBF1P1, XKR4, TMEM68, SDR16C5, SNORD54, LYN, MOS, PLAG1, RP1, RPS20, CHCHD7, TGS1) 0.0725637796679863 13 0.111526241594087 1.18148799115204 956 0.255770180613427 4 4 0 -6.76721809290378 LTS-036 chr8 57302882 57307538 4657 * character(0) NA 0 NA 2.055 1 NA NA NA NA NA LTS-036 chr8 57307539 61193797 3886259 * c(LINC00968, LINC01606, UBXN2B, CYP7A1, LINC00588, LOC286177, PENK, IMPAD1, SDCBP, CA8, NSMAF, FAM110B, TOX) 0.0610221332228698 18 0.079103907012076 1.61519788866645 887 0.376812265844592 6 6 0 -6.83386610374311 LTS-036 chr8 61193798 61193809 12 * CA8 0.122 1 NA 0.344 1 NA NA NA NA NA LTS-036 chr8 61193810 67748340 6554531 * c(MIR124-2HG, LOC100130298, LINC00967, RRS1-AS1, C8orf44-SGK3, MIR4470, YTHDF3-AS1, ADHFE1, CRH, CLVS1, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, ASPH, MYBL1, PDE7A, ARMC1, LINC00251, CHD7, C8orf44, RAB2A, UG0898H09, TTPA, CA8, VCPIP1, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.191453299433712 30 0.0955778613812158 1.46015883532969 2420 0.391605959283067 5 4 1 -6.90811268191272 LTS-036 chr8 67748341 67752174 3834 * c(C8orf44-SGK3, SGK3) NA 0 NA 1.537 1 NA NA NA NA NA LTS-036 chr8 67752175 69012364 1260190 * c(TCF24, C8orf44-SGK3, ARFGEF1, COPS5, MCMDC2, SGK3, PPP1R42, CPA6, SNHG6, SNORD87, CSPP1, PREX2) 0.0345937585233218 9 0.0875587104620538 1.60327683522742 961 0.396323102922228 6 6 0 -6.81671001368342 LTS-036 chr8 69012365 69020496 8132 * PREX2 0.234 1 NA 1.82722836897878 31 0.345438340824854 6 6 0 -5.76449077883322 LTS-036 chr8 69020497 70745171 1724675 * c(LINC01592, C8orf34, SULF1, C8orf34-AS1, PREX2, SLCO5A1) 0.217465177242066 38 0.0657362774975269 1.60651968512679 762 0.37479038529602 6 5 1 -6.79933458649672 LTS-036 chr8 70745172 70963955 218784 * c(PRDM14, SLCO5A1) 0 1 NA 1.60446849147456 19 0.457186149657442 5 5 0 -5.76785055480201 LTS-036 chr8 70963956 72756164 1792209 * c(MSC-AS1, NCOA2, EYA1, TRAM1, LACTB2-AS1, XKR9, LACTB2, PRDM14, MSC) 0.122698030924849 20 0.124935130536232 1.59392813822777 729 0.386890583453932 5 5 0 -6.87261969503075 LTS-036 chr8 72756165 72756170 6 * c(MSC-AS1, MSC) NA 0 NA 1.458 1 NA NA NA NA NA LTS-036 chr8 72756171 73978819 1222649 * c(MSC-AS1, SBSPON, LOC392232, TERF1, TRPA1, MSC, KCNB2) 0.0391826104679936 6 0.113901273039418 1.53094343228553 402 0.38887970714917 5 5 0 -6.77864786414902 LTS-036 chr8 73978820 73993200 14381 * SBSPON 0.24 1 NA 1.62066180462914 35 0.398870942250032 6 6 0 -5.76471967695571 LTS-036 chr8 73993201 92972172 18978972 * c(C8orf88, STAU2-AS1, C8orf89, LRRC69, ZFHX4-AS1, REXO1L2P, MIR2052, MIR4661, MIR5708, MIR5681A, MIR5681B, LINC00534, LOC101241902, WWP1, STMN2, SLC26A7, DCAF4L2, RALYL, RDH10, SLC7A13, SBSPON, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, HEY1, LY96, ATP6V0D2, REXO1L1P, STAU2, MRPS28, HNF4G, SLC10A5, IL7, IMPA1, CA13, C8orf59, MMP16, MIR2052HG, NBN, PI15, ZC2HC1A, RMDN1, OTUD6B, PMP2, GDAP1, CNGB3, TMEM70, NA NA NA NA NA NA NA NA NA LTS-036 UBE2W, TMEM55A, PKIA, PAG1, JPH1, PEX2, RPL7, ZNF704, SNX16, NECAB1, FABP9, FABP12, ZBTB10, TCEB1, TPD52, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, ZFHX4, CRISPLD1, LRRCC1, PSKH2, RUNX1T1, RIPK2, CPNE3, CHMP4C) 0.202124496555418 114 0.0968582743322913 1.51283951842244 6176 0.526628400081632 5 4 1 -6.84359863614888 LTS-036 NA NA NA NA LTS-036 chr8 92972173 92972271 99 * RUNX1T1 NA 0 NA 1.359 1 NA NA NA NA NA LTS-036 chr8 92972272 98788303 5816032 * c(LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, C8orf37-AS1, FSBP, CDH17, CPQ, FAM92A1, NDUFAF6, C8orf37, RAD54B, KIAA1429, GEM, TRIQK, DPY19L4, C8orf87, RBM12B, GDF6, FLJ46284, MTERF3, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, LINC01298, SDC2, LINC00535, UQCRB, PLEKHF2, TSPYL5, RUNX1T1, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.199365947243341 53 0.137539085353946 1.27165089174519 2902 0.309292814398867 4 3 1 -7.01973928385432 LTS-036 chr8 98788304 98817494 29191 * LAPTM4B NA 0 NA 1.757 1 NA NA NA NA NA LTS-036 chr8 98817495 99019252 201758 * c(MATN2, LAPTM4B) 0.177956965890725 14 0.142419612953575 1.4407714072161 130 0.413895040549573 6 5 1 -6.78461207141287 LTS-036 chr8 99019253 99046040 26788 * c(MATN2, RPL30) 0.276 1 NA 1.54645425743693 57 0.282364031199599 5 5 0 -5.76468919968351 LTS-036 chr8 99046041 99076971 30931 * c(ERICH5, SNORA72, MATN2, RPL30) 0.252 1 NA 1.55749170287191 49 0.366213368533314 5 5 0 -5.76468192736688 LTS-036 chr8 99076972 99101299 24328 * ERICH5 NA 0 NA 1.034 1 NA NA NA NA NA LTS-036 chr8 99101300 100888323 1787024 * c(MIR875, RIDA, POP1, OSR2, VPS13B, ERICH5, KCNS2, STK3, MIR599, NIPAL2) 0.342439803821987 18 0.0512987214609625 1.18977797120624 926 0.268690746700879 4 2 2 -7.13488441351107 LTS-036 chr8 100888324 101733775 845452 * c(MIR4471, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, POLR2K, SPAG1) 0.312947413102758 16 0.0734835299006973 0.977182519927715 778 0.219440079358729 3 2 1 -6.90309123008479 LTS-036 chr8 101733776 110302047 8568272 * c(MIR3151, BAALC-AS1, MIR5680, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, PABPC1, ANGPT1, LRP12, RSPO2, EIF3E, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, OXR1, KLF10, TRHR, YWHAZ, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, NUDCD1, EMC2, RIMS2) 0.248359246818524 58 0.137823304117608 1.17970568510307 2985 1.82026735307634 4 3 1 -6.79055160478176 LTS-036 chr8 110302048 110346783 44736 * c(ENY2, NUDCD1) NA 0 NA 1.16781045967433 39 0.248091435410186 4 NA NA -5.76566193079649 LTS-036 chr8 110346784 110348269 1486 * ENY2 NA 0 NA 1.492 1 NA NA NA NA NA LTS-036 chr8 110348270 110376861 28592 * c(ENY2, PKHD1L1) 0 1 NA 1.4932571514523 79 0.307663836600654 5 5 0 -5.76441101407572 LTS-036 chr8 110376862 110566184 189323 * c(EBAG9, PKHD1L1) 0.00458902197305189 12 0.0669726312259966 1.5642934082422 428 0.35303755720653 7 7 0 -7.07591116138567 LTS-036 chr8 110566185 110570060 3876 * EBAG9 0.283 1 NA 1.42958734163551 13 0.31807183513743 5 5 0 -5.76444946818449 LTS-036 chr8 110570061 116636000 6065940 * c(MIR2053, CSMD3, KCNV1, SYBU, TRPS1, EBAG9) 0.126398711493035 15 0.157178454842471 1.57262409497328 988 0.430072395277976 5 5 0 -6.86761336063543 LTS-036 chr8 116636001 116679959 43959 * TRPS1 NA 0 NA 2.417 1 NA NA NA NA NA LTS-036 chr8 116679960 120428725 3748766 * c(MIR3610, LINC00536, COLEC10, MAL2, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, SAMD12-AS1, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H, MED30) 0.124119027634705 22 0.110004102638959 1.93503504954148 943 0.493610139451598 7 6 1 -6.90141254126928 LTS-036 chr8 120428726 120428776 51 * NOV NA 0 NA 1.547 1 NA NA NA NA NA LTS-036 chr8 120428777 121021402 592626 * c(NOV, ENPP2, DEPTOR, TAF2, DSCC1) 0.148250093653916 13 0.114390077120307 1.65674949820557 492 0.369694260043748 7 6 1 -6.87552864548362 LTS-036 chr8 121021403 121061739 40337 * DEPTOR NA 0 NA 2.4 1 NA NA NA NA NA LTS-036 chr8 121061740 121210164 148425 * c(DEPTOR, COL14A1) 0.113890606899628 5 0.0848251142056408 2.27759388255355 66 0.777153308878734 11 10 1 -6.7486345360913 LTS-036 chr8 121210165 121211669 1505 * COL14A1 NA 0 NA 1.59 1 NA NA NA NA NA LTS-036 chr8 121211670 129162510 7950841 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ZHX1-C8orf76, MIR4663, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, MYC, NDUFB9, POU5F1B, TRMT12, WDYHV1, PVT1, HAS2-AS1, FER1L6, SNTB1, SQLE, CASC8, COL14A1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.159775941727573 68 0.116382339684088 1.57828928222019 3223 0.439240221589007 6 5 1 -7.07837007827087 LTS-036 chr8 130496231 130891759 395529 * c(FAM49B, GSDMC) 0.322818319876203 5 0.0758847810829023 1.05870760254315 144 0.235724731701166 3 2 1 -6.85356214620882 LTS-036 chr8 130891760 131020578 128819 * FAM49B NA 0 NA 1.514 1 NA NA NA NA NA LTS-036 chr8 131020579 133764263 2743685 * c(ASAP1-IT2, MIR5194, HHLA1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, ASAP1, FAM49B, OC90, HPYR1) 0.135911676421328 25 0.167949724620197 1.30216168694723 1043 0.324764171896504 4 4 0 -6.83805880805483 LTS-036 chr8 133764264 133815726 51463 * c(TMEM71, PHF20L1) 0.324 1 NA 1.14283830420035 33 0.238017991744194 4 4 0 -5.76749057138352 LTS-036 chr8 133815727 135490438 1674712 * c(NDRG1, PHF20L1, ZFAT, ST3GAL1, SLA, TG, WISP1) 0.289073626211085 43 0.0703051882195541 1.23652128861956 1031 0.271752383366542 4 3 1 -6.73333862501743 LTS-036 chr8 135490439 141595401 6104963 * c(KHDRBS3, COL22A1, AGO2, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, CHRAC1, ZFAT, ZFAT-AS1, TRAPPC9) 0.232072516987961 34 0.141574039132002 1.43732915808749 1249 0.365599040174535 5 4 1 -6.77135592048232 LTS-036 chr8 141595402 141668008 72607 * AGO2 NA 0 NA 0.894 1 NA NA NA NA NA LTS-036 chr8 141668009 141900899 232891 * PTK2 0.464067077463305 4 0.0191202336108462 0.842304706168935 277 0.133946668544337 2 1 1 -11.4001198469908 LTS-036 chr8 141900900 141902607 1708 * PTK2 NA 0 NA 1.705 1 NA NA NA NA NA LTS-036 chr8 141902608 142477731 575124 * c(PTP4A3, DENND3, GPR20, MROH5, SLC45A4, PTK2, LINC01300) 0.319842330751529 22 0.0327261032739591 1.2934568083975 614 0.308943521739572 4 3 1 -7.19956102776107 LTS-036 chr8 142477732 143620836 1143105 * c(MIR4472-1, TSNARE1, MROH5, ADGRB1, LINC00051) 0.215146138395051 14 0.0967269863590813 1.77742370722776 371 0.648252982254026 6 5 1 -6.73745959581617 LTS-036 chr8 143620837 143623309 2473 * ADGRB1 NA 0 NA 1.408 1 NA NA NA NA NA LTS-036 chr8 143623310 143959289 335980 * c(LOC100288181, LYPD2, CYP11B1, ARC, GML, THEM6, LY6K, SLURP1, ADGRB1, LYNX1, PSCA, LY6D, JRK) 0.240077303745406 56 0.078493369725787 1.51530460051502 639 0.420311004391249 5 4 1 -6.73379801213059 LTS-036 chr8 143959290 143960626 1337 * CYP11B1 0 1 NA 1.86584082199559 5 0.440152587178583 6 6 0 -5.76442779118935 LTS-036 chr8 143960627 144124512 163886 * c(CDC42P3, LOC100133669, CYP11B1, CYP11B2, C8orf31, LY6E) 0.0570345967501668 9 0.0820990255727801 1.53401050037366 164 0.649267865741377 6 6 0 -6.73752380684028 LTS-036 chr8 144124513 144124609 97 * C8orf31 0.263 1 NA 1.13890297575546 3 0.406219562962363 4 4 0 -5.76441229375614 LTS-036 chr8 144124610 144680857 556248 * c(RHPN1, TOP1MT, EEF1D, ZC3H3, GLI4, C8orf31, ZFP41, GPIHBP1, MAFA, LY6H, MROH6, RHPN1-AS1, GSDMD, ZNF696, TIGD5, NAPRT) 0.241925835951395 49 0.0756836865391959 1.49555620137564 1003 0.359527434529337 5 4 1 -6.73307447352179 LTS-036 chr8 144680858 144686512 5655 * c(PYCRL, TIGD5) 0 1 NA 1.47367638450922 37 0.331713546417503 5 5 0 -5.76441386288121 LTS-036 chr8 144686513 144808747 122235 * c(CCDC166, MAPK15, ZNF707, BREA2, FAM83H, PYCRL, TSTA3, ZNF623) 0.000375989805317793 9 0.00304138126514911 1.5487087059102 440 0.373748192379159 20 20 0 -14.3095812409169 LTS-036 chr8 144808748 144941659 132912 * c(MIR937, FAM83H-AS1, MIR4664, PUF60, SCRIB, FAM83H, NRBP2, EPPK1) 0.258 1 NA 1.55654365084068 509 0.280662979259133 5 5 0 -5.76634379749581 LTS-036 chr8 144941660 145166134 224475 * c(CYC1, OPLAH, GRINA, WDR97, SPATC1, PLEC, EXOSC4, MIR661, SHARPIN, EPPK1, MAF1, PARP10, GPAA1) 0.24485252551806 30 0.0940633254536661 1.51312220860148 1202 0.306416572501928 5 4 1 -6.73384330408807 LTS-036 chr8 145166135 145170549 4415 * WDR97 0.341 1 NA 1.64188935311026 63 0.331943292154472 6 6 0 -5.76450414086568 LTS-036 chr8 145170550 145267930 97381 * c(WDR97, HGH1, MROH1) NA 0 NA 1.5563332481403 110 0.341631640169111 5 NA NA -5.76536057411748 LTS-036 chr8 145267931 146280802 1012872 * c(MIR939, MIR1234, MFSD3, ADCK5, BOP1, FBXL6, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, CPSF1, HSF1, ZNF517, TMEM249, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, SLC39A4, ZNF250, RPL8, SCX, C8orf33, MROH1, ZNF7, ZNF16, SLC52A2, ARHGAP39, ZNF34, SCRT1, PPP1R16A, DGAT1, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.288894637928138 55 0.122673945765582 1.12565013996355 2589 0.218575803174375 4 3 1 -6.83517711777278 LTS-036 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.979598916359512 3 0.0837157890324957 3 NA NA -5.76441040017846 LTS-036 chr9 14732 14764 33 * WASH1 0.143 1 NA 0.107 1 NA NA NA NA NA LTS-036 chr9 14765 33363943 33349179 * c(CDKN2B-AS1, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, WASH1, MIR3152, LOC100506422, MIR4473, MIR4665, MIR4474, RCL1, TOPORS, CDKN2A, CDKN2B, DMRT2, RRAGA, PSIP1, INSL6, UHRF2, PLIN2, TAF1L, C9orf66, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, KIAA2026, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FOXD4, KDM4C, MLANA, KANK1, DDX58, SLC24A2, B4GALT1, RANBP6, SPINK4, GLDC, TUSC1, LURAP1L, NA NA NA NA NA NA NA NA NA LTS-036 CD274, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, INSL4, JAK2, LOC389705, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, PLPP6, MIR101-2, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, NFIB, NFX1, ACO1, AK3, CDKN2A-AS1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, SPATA6L, SMU1, MIR31HG, CDC37L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 DENND4C, PLGRKT, CBWD1, KLHL9, IFNK, BAG1, MIR491, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, RPS6, DMRTA1, SH3GL2, LRRC19, SLC1A1, FAM138C, SMARCA2, SNAPC3, SCARNA8, TEK, TYRP1, VLDLR, MOB3B, CAAP1, ERMP1, IFT74, PDCD1LG2, DOCK8, GLIS3-AS1, MPDZ, TPD52L3, IL33, TMEM261, ADAMTSL1, CER1, PLAA, PUM3) 0.0924897968659302 221 0.0704322010188079 0.947983030216049 11132 0.248682021718011 3 3 0 -6.98445973318408 LTS-036 NA NA NA NA LTS-036 chr9 33363944 33386167 22224 * c(AQP7, NFX1) 0.241 1 NA 0.954740030469829 57 0.171381347923396 3 3 0 -5.76459518135611 LTS-036 chr9 33386168 33799245 413078 * c(PTENP1, ANXA2P2, AQP3, AQP7, SUGT1P1, ANKRD18B, PRSS3, NOL6) 0.25867916535528 33 0.083592808158104 0.978676582527885 466 0.282338637312255 4 3 1 -6.97723253225483 LTS-036 chr9 33799246 34096847 297602 * c(SNORD121A, SNORD121B, DCAF12, UBE2R2, UBAP2) 0 1 NA 0.965792522363299 343 0.204585298821513 3 3 0 -5.76473153571856 LTS-036 chr9 34096848 39173190 5076343 * c(GNE, FAM95C, EBLN3P, MIR4667, MIR4540, MIR4475, MIR4476, SIGMAR1, CREB3, UNC13B, CCL27, DCTN3, CLTA, CNTFR, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, FAM201A, TRMT10B, LINC00961, ATP8B5P, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, PHF24, ANKRD18A, DNAJB5, DCAF12, GALT, FAM205A, SPAG8, FBXO10, DNAI1, SIT1, STOML2, NUDT2, KIF24, IGFBPL1, IL11RA, ENHO, FAM205BP, FAM221B, OR13J1, TOMM5, CNTFR-AS1, NPR2, NA NA NA NA NA NA NA NA NA LTS-036 PAX5, EXOSC3, UBAP1, TMEM8B, OR2S2, KIAA1161, GBA2, RMRP, CCL19, CCL21, POLR1E, SHB, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, DCAF10, CNTNAP3, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.0955267711697731 109 0.0700775103608555 0.97401833941695 6190 0.325693745072038 3 3 0 -6.74454810035417 LTS-036 NA NA NA NA LTS-036 chr9 39173191 39178214 5024 * CNTNAP3 NA 0 NA 0.860329734159897 23 0.176325023278014 3 NA NA -5.76590779364622 LTS-036 chr9 40498471 44175697 3677227 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.458008756691426 88 0.255247634947497 1 NA NA -5.76444192356183 LTS-036 chr9 65602571 66457106 854536 * LOC286297 0.275 1 NA 1.15813130787212 3 0.283739904372532 4 4 0 -5.7887175303596 LTS-036 chr9 66457107 68427877 1970771 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.369082877434708 28 0.0979453740423523 0.938863100774232 66 0.475450660464501 3 2 1 -6.75707314597241 LTS-036 chr9 68427878 68433537 5660 * FRG1JP 0.175 1 NA 0.70948811474367 5 0.210266973155558 2 2 0 -5.76441721311019 LTS-036 chr9 68433538 117074810 48641273 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, NA NA NA NA NA NA NA NA NA LTS-036 SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF883, ZNF169, ECM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ABCA1, LPAR1, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 OR13D1, NA, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 PTPN3, SLC46A2, INIP, ZNF462, RAD23B, PGM5P2, RGS3, NAA35, RORB, MIR455, SLC28A3, FRG1JP, CBWD6, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, ANKRD20A4, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.13598590162703 528 0.0848673327805186 0.769691113513943 26179 0.724086855388267 2 2 0 -7.01088044781947 LTS-036 NA NA NA NA LTS-036 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.198 1 NA NA NA NA NA LTS-036 chr9 117085363 117089956 4594 * ORM1 0.299 1 NA 0.264365818860905 46 0.163062972039153 0 0 0 -5.77230367860354 LTS-036 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.551 1 NA NA NA NA NA LTS-036 chr9 117092173 123632829 6540657 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, BRINP1, MEGF9, TMEM268, TRIM32, ASTN2, PSMD5-AS1, WHRN, PHF19, FBXW2, TNC, MIR147A, ORM1, ORM2, DEC1, PAPPA, CDK5RAP2, PSMD5, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.163618942060421 66 0.0840790614724533 0.781145355032345 2336 0.211841815264608 2 2 0 -7.36419519614969 LTS-036 chr9 123632830 124046722 413893 * c(CNTRL, PHF19, GSN, RAB14, TRAF1, C5) 0 1 NA 0.738583293687942 731 0.141338638172056 2 2 0 -5.77601990701181 LTS-036 chr9 124046723 125377087 1330365 * c(MIR4478, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, STOM, MORN5, OR1J4, LHX6, OR1J2, GGTA1P, GSN, OR1J1, NDUFA8, PTGS1, MRRF, RBM18) 0.0300057518572452 23 0.0637028985881926 0.803638572409194 1143 0.212870183002926 3 3 0 -8.06175970148388 LTS-036 chr9 125377088 125378014 927 * OR1Q1 0.178 1 NA 0.844398665912105 21 0.2003312257238 3 3 0 -5.76469323621456 LTS-036 chr9 125378015 131191286 5813272 * c(LOC100129034, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, MIR3960, MIR219B, MIR4672, RABEPK, CDK9, ZBTB6, NEK6, SLC27A4, RPL35, SLC25A25, PTRH1, PIP5KL1, TTC16, OLFML2A, DNM1, ENG, AK1, NAIF1, ZBTB43, ANGPTL2, FPGS, RABGAP1, NR5A1, OR1L4, CIZ1, GAPVD1, NR6A1, OR1L3, OR1L1, SNORA65, TRUB2, ST6GALNAC4, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, OR1B1, NA NA NA NA NA NA NA NA NA LTS-036 SWI5, PTGES2-AS1, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, PDCL, PBX3, COQ4, CERCAM, RC3H2, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, RPL12, NRON, FAM129B, STXBP1, SNORD90, MIR601, ZNF79, C9orf16, MAPKAP1, PTGES2, MIR600HG, URM1, ARPC5L, GARNL3, DPM2, MVB12B, LRSAM1, LHX2, RALGPS1) 0.137097948365191 86 0.078543733406654 0.774439364515481 6914 0.21990025544001 2 2 0 -7.14532473039243 LTS-036 NA NA NA NA LTS-036 chr9 131191287 131193468 2182 * CERCAM NA 0 NA 1.286 1 NA NA NA NA NA LTS-036 chr9 131193469 131517819 324351 * c(LOC100506100, ZER1, GLE1, PKN3, ODF2, CERCAM, SET, SPTAN1, ZDHHC12, WDR34) 0.222 1 NA 1.01747146515044 960 0.223037690655419 3 3 0 -5.77178564750482 LTS-036 chr9 131517820 131517842 23 * ZER1 NA 0 NA 0.847 1 NA NA NA NA NA LTS-036 chr9 131517843 139616554 8098712 * c(LINC01502, RNU6ATAC, LOC100272217, MIR3689A, MIR3689B, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, LAMC3, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, SDCCAG3, USP20, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, COL5A1, NACC2, C9orf116, FAM69B, CRAT, DBH-AS1, ASB6, CAMSAP1, C9orf62, C9orf163, AK8, DBH, STKLD1, QSOX2, SARDH, TOR1A, ENDOG, NA NA NA NA NA NA NA NA NA LTS-036 FCN1, FCN2, DOLK, FNBP1, SETX, PMPCA, EXOSC2, NCS1, NUP188, ABL1, PHYHD1, GPSM1, DKFZP434A062, GBGT1, LINC00094, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TOR1B, ABO, FAM78A, RAPGEF1, NTMT1, OBP2B, OBP2A, QRFP, GLT6D1, C9orf50, IER5L, CFAP77, TMEM8C, LCN9, LCN1, LOC401557, SOHLH1, MIR126, C9orf106, ASS1, NOTCH1, PAEP, MRPS2, EGFL7, PRRX2, SPOUT1, C9orf78, TBC1D13, PTPA, LRRC8A, INPP5E, BARHL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SH3GLB2, REXO4, DOLPP1, KCNT1, GPR107, RALGDS, PRDM12, RPL7A, RXRA, CARD9, FAM163B, DDX31, SNAPC4, SURF1, SURF2, SURF4, MED22, SURF6, TSC1, TTF1, DNLZ, VAV2, BRD3, NUP214, LHX3, GFI1B, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, MIGA2, FIBCD1, SNHG7, KYAT1, FUBP3, C9orf69, GTF3C5, GTF3C4, MED27, PTGES, ADAMTSL2, PPP1R26, SEC16A) 0.12414832763348 337 0.0721941604496089 0.901025020562655 11678 0.580738091812738 3 3 0 -6.86049794427172 LTS-036 NA NA NA NA LTS-036 chr9 139616555 139760806 144252 * c(LOC100128593, CCDC183-AS1, MIR4292, LCN8, FAM69B, MAMDC4, LCN6, PHPT1, LCN15, C9orf172, LCN10, RABL6, SNORA17A, SNORA17B, CCDC183, SNHG7, TMEM141, EDF1) 0.109908122176106 20 0.0586464877577148 1.05782593038 687 0.27272735101996 3 3 0 -6.74469967286263 LTS-036 chr9 139760807 139780852 20046 * TRAF2 NA 0 NA 0.718 1 NA NA NA NA NA LTS-036 chr9 139780853 141070283 1289431 * c(STPG3-AS1, MAN1B1-AS1, MIR3621, MIR4479, TUBB4B, NOXA1, MAN1B1, ZMYND19, SLC34A3, ABCA2, FUT7, NELFB, NSMF, NDOR1, LCN12, C9orf142, TPRN, GRIN1, ANAPC2, DPP7, PNPLA7, CYSRT1, ENTPD8, LRRC26, LCNL1, C9orf139, FAM166A, STPG3, NRARP, FBXW5, TOR4A, EXD3, NPDC1, PTGDS, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, TRAF2, RNF208, C8G, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, SAPCD2, CLIC3, UAP1L1, ARRDC1, DPH7, NA NA NA NA NA NA NA NA NA LTS-036 TMEM203, ENTPD2) 0.139792875778997 98 0.0923730948912821 0.900296359060875 3502 1.1383275392864 2 2 0 -6.76455677900433 LTS-036 NA NA NA NA LTS-036 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.836436025356822 5 0.323138979388126 3 NA NA -5.7646071817365 LTS-036 chr10 94832 95226 395 * TUBB8 0.14 1 NA 0.685657322343031 5 0.387817353918052 2 2 0 -5.7644131453861 LTS-036 chr10 95227 1065191 969965 * c(MIR5699, ZMYND11, DIP2C, LARP4B, GTPBP4, PRR26, IDI2) 0.273770599247194 19 0.11612631759178 0.949189385873818 795 0.207196951625327 3 2 1 -7.00678615820572 LTS-036 chr10 1065192 1175546 110355 * c(WDR37, IDI1, IDI2-AS1, IDI2) 0.366 1 NA 0.921058150967083 190 0.176156599229104 3 3 0 -5.77111934352449 LTS-036 chr10 1175547 3171857 1996311 * c(ADARB2, WDR37, LINC00700, LINC00200, LINC00701, PFKP, ADARB2-AS1) 0.0232839760736721 9 0.0735160602257161 0.92203268089272 325 0.196885158364072 3 3 0 -7.49127624879552 LTS-036 chr10 3171858 3175541 3684 * PFKP 0.49 1 NA 0.813871393972744 17 0.0694194942107085 2 2 0 -5.77187370094971 LTS-036 chr10 3175542 3824433 648892 * c(PITRM1-AS1, PITRM1, KLF6, PFKP) 0.27282281211116 19 0.0870024870250156 0.86960522033731 337 0.468920988087649 4 3 1 -6.96426615181643 LTS-036 chr10 3824434 5008383 1183950 * c(LINC00704, KLF6, AKR1C1, LINC00705, AKR1C6P, AKR1E2, AKR1C3) 0 1 NA 0.916862295752928 106 0.25873530202492 3 3 0 -5.80321916696678 LTS-036 chr10 5008384 5499173 490790 * c(NET1, AKR1C4, UCN3, AKR1C1, AKR1C2, AKR1C8P, TUBAL3, AKR1C3) 0.0943898317046391 30 0.155044687662666 0.923710439677668 511 0.29441754888133 3 3 0 -6.74557986808548 LTS-036 chr10 5499174 5567864 68691 * c(NET1, CALML5, CALML3) 0.31 1 NA 0.913448106241748 73 0.175896126985743 3 3 0 -5.76993010585232 LTS-036 chr10 5567865 7849688 2281824 * c(MIR3155A, LINC00707, MIR3155B, KIN, GDI2, IL2RA, IL15RA, ITIH2, LOC399715, PRKCQ-AS1, ATP5C1, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, ITIH5, CALML3, FBXO18, RBM17) 0.262291835669709 58 0.129444465431991 0.901296767264216 1826 0.22394560195067 3 2 1 -7.17264548075514 LTS-036 chr10 7849689 8019299 169611 * c(ATP5C1, TAF3) 0 1 NA 0.85374846266383 67 0.198697139243055 3 3 0 -5.80898465567793 LTS-036 chr10 8019300 11505175 3485876 * c(CELF2, SFTA1P, LINC00710, GATA3, GATA3-AS1, CELF2-AS2, TAF3, USP6NL) 0.0704275137433435 9 0.137265658892205 0.968238793676546 483 0.287507523646835 3 3 0 -6.77234384944336 LTS-036 chr10 11505176 11639623 134448 * USP6NL 0.262 1 NA 0.857745149607346 73 0.163043705796943 3 3 0 -5.81320388947072 LTS-036 chr10 11639624 16554818 4915195 * c(PPIAP30, MIR1265, MIR4480, OPTN, RPP38, NUDT5, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, PROSER2, UPF2, NA, ACBD7, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, DCLRE1C, MEIG1, SUV39H2, ECHDC3, FAM188A, FAM107B, CCDC3, ITGA8, PRPF18, CDC123, PTER, NMT2, USP6NL) 0.271416220861235 87 0.126647855213392 0.918324501522581 3097 0.240262120453599 3 2 1 -7.1432808258678 LTS-036 chr10 16554819 17842547 1287729 * c(ST8SIA6-AS1, TRDMT1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, STAM, CUBN, HACD1, PTER) 0.301994228415934 37 0.104648869491676 0.850359832093352 997 0.221037871965442 3 2 1 -7.14923380955959 LTS-036 chr10 17842548 18196475 353928 * c(MRC1, NA, TMEM236) 0.272 1 NA 0.593068854966115 142 0.378503784094649 2 2 0 -5.81680465363399 LTS-036 chr10 18196476 18242113 45638 * c(SLC39A12, MRC1) NA 0 NA 0.908 1 NA NA NA NA NA LTS-036 chr10 18242114 23220883 4978770 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, SLC39A12, NSUN6, ARL5B, COMMD3, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, DNAJC1, BMI1, CACNB2, MLLT10, PLXDC2, SPAG6) 0.268068231956715 42 0.123924670836004 0.936993440847153 1925 0.267359683317288 3 2 1 -7.06282802917646 LTS-036 chr10 23220884 23270447 49564 * ARMC3 0 1 NA 0.941466309254181 37 0.363614458560815 3 3 0 -5.76467305013427 LTS-036 chr10 23270448 27057755 3787308 * c(ABI1, GPR158-AS1, ENKUR, ARMC3, OTUD1, MSRB2, PDSS1, PTF1A, C10orf67, GAD2, MYO3A, APBB1IP, KIAA1217, PRTFDC1, GPR158, ARHGAP21, LINC00264, MIR603, LINC00202-2, THNSL1) 0.143922741727445 50 0.169202534115244 0.950259159801024 1844 0.257015348908489 3 3 0 -6.78546170270132 LTS-036 chr10 27057756 27293307 235552 * c(ABI1, ANKRD26, LINC00202-1) 0 1 NA 0.974374432746854 49 0.197578321248084 3 3 0 -5.76441023523839 LTS-036 chr10 27293308 27577640 284333 * c(YME1L1, ANKRD26, LRRC37A6P, MASTL, ACBD5) 0.000435976275292875 10 0.00609553570701998 0.891095672108869 546 0.254091727224644 20 20 0 -14.2438851925602 LTS-036 chr10 27577641 27688109 110469 * PTCHD3 0.333 1 NA 0.889301523957419 37 0.15634890623372 3 3 0 -5.78687430837271 LTS-036 chr10 27688110 33469181 5781072 * c(MIR938, LINC00837, MIR5586, LYZL2, MAP3K8, MPP7, WAC-AS1, ZNF438, ZEB1-AS1, NA, RAB18, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, PTCHD3P1, WAC, ARMC4, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, CCDC7, EPC1, LYZL1, NRP1, ARHGAP12) 0.241633131076401 82 0.123452268759423 0.910094040904973 2439 0.452327061903373 3 2 1 -7.26010877721891 LTS-036 chr10 33469182 33474644 5463 * NRP1 0 1 NA 0.993069616416673 11 0.119503518396284 3 3 0 -5.76449447996978 LTS-036 chr10 33474645 33491480 16836 * NRP1 0.0542324756444436 12 0.167892552219892 0.933310404112671 80 0.334870531377143 5 5 0 -6.75759518889096 LTS-036 chr10 33491481 33495306 3826 * NRP1 0.323 1 NA 0.964357093055726 17 0.209437043046353 3 3 0 -5.76441554329399 LTS-036 chr10 33495307 37433899 3938593 * c(LINC00838, CREM, GJD4, CCNY, PARD3, FZD8, CUL2, NRP1, ANKRD30A) 0.239201404546667 11 0.143374652254472 0.926957553796172 820 0.204439279537565 3 2 1 -7.2234088133336 LTS-036 chr10 37433900 37441072 7173 * ANKRD30A 0 1 NA 1.02061297780493 14 0.326052084088511 3 3 0 -5.76449776850693 LTS-036 chr10 37441073 38671982 1230910 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.0165430793693953 14 0.0692317338150141 0.917689131585187 557 0.181201624100833 3 3 0 -7.66405695004282 LTS-036 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 0.799925060464544 9 0.108753160873604 2 NA NA -5.80638793848317 LTS-036 chr10 42379906 43087295 707390 * c(ZNF37BP, LOC441666, ZNF33B, LINC00839) 0.184031235680477 18 0.200076790813483 1.68076186399572 139 0.634368437636996 6 5 1 -6.74273197281879 LTS-036 chr10 43087296 43087416 121 * ZNF33B 0.38 1 NA 1.41194224451565 3 0.133357914400808 5 5 0 -5.76442184871878 LTS-036 chr10 43087417 44873849 1786433 * c(C10orf142, LINC00840, MIR5100, HNRNPA3P1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, ZNF32, ZNF33B, ZNF239, BMS1) 0.352975650478029 31 0.144124893568865 1.50586084074449 942 0.333385077023729 5 3 2 -6.74944823175221 LTS-036 chr10 44873850 44880459 6610 * CXCL12 NA 0 NA 1.52338951764135 19 0.168945387210332 5 NA NA -5.76447848615066 LTS-036 chr10 45406630 45427548 20919 * c(TMEM72-AS1, TMEM72) 0.076 1 NA 0.740050400057853 19 0.120109623417222 2 2 0 -5.7653331132648 LTS-036 chr10 45427549 46659788 1232240 * c(RSU1P2, MIR3156-1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ALOX5, FAM21C, PTPN20, ANKRD30BP3, TMEM72, NA, ZNF22, OR13A1, RASSF4, ZFAND4) 0.0827864736537117 6 0.0823709091042867 0.795047806017544 686 0.178652853779034 2 2 0 -7.27406606474195 LTS-036 chr10 46659789 46927789 268001 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 0.003 1 NA NA NA NA NA LTS-036 chr10 46927790 47420602 492813 * c(PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.0363263186928171 13 0.075545197882307 0.485916841067724 200 0.228764739207166 2 2 0 -8.4800634489395 LTS-036 chr10 47420603 47658503 237901 * c(PTPN20, GLUD1P7, FAM35DP, NA, NA) NA 0 NA 0.13 1 NA NA NA NA NA LTS-036 chr10 47658504 47999666 341163 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0 3 0 0.162120851342496 102 0.0881144818421392 0 0 0 -Inf LTS-036 chr10 47999667 48007141 7475 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.829 1 NA NA NA NA NA LTS-036 chr10 48007142 51568378 3561237 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, MSMB, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, AGAP7P, SLC18A3, NA, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.0853934479541958 71 0.0987225243848918 0.8013507605022 2349 0.271481503843609 2 2 0 -7.27112616551649 LTS-036 chr10 51568379 51620317 51939 * c(TIMM23, NA, NCOA4, PARG) 0.347 1 NA 0.826150337232781 123 0.243296585074013 2 2 0 -5.77510135497641 LTS-036 chr10 51620318 51633027 12710 * c(TIMM23, NA, PARG) 0.463375401121375 10 0.0389466872075719 0.73950225183818 45 0.223570640543725 2 1 1 -8.51941470788039 LTS-036 chr10 51633028 51827763 194736 * c(NA, FAM21A, AGAP6, NA, PARG) 0.15 1 NA 0.595326586146574 4 0.288529028002383 2 2 0 -5.81208228645716 LTS-036 chr10 51827764 63168472 11340709 * c(MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, FAM21A, MBL2, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.13393729275938 60 0.091085374677969 0.823961594252323 2887 0.234262445738469 2 2 0 -8.51795487706887 LTS-036 chr10 63168473 71124696 7956224 * c(MIR1296, MIR548AV, DNA2, EGR2, C10orf107, TMEM26, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.121884367072677 55 0.0862215180123278 0.759045854423961 3634 0.201285026993162 2 2 0 -7.13822691009549 LTS-036 chr10 71124697 71128277 3581 * HK1 NA 0 NA 1.102 1 NA NA NA NA NA LTS-036 chr10 71128278 75230773 4102496 * c(MIR1256, MIR4676, MICU1, ECD, MSS51, CFAP70, ANAPC16, COL13A1, ADAMTS14, OIT3, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, DNAJC9, TSPAN15, NUDT13, PALD1, HK1, ANXA7, FAM149B1, C10orf105, DNAJC9-AS1, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, PSAP, SAR1A, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, PLA2G12B, AIFM2, SGPL1, MCU, CHST3, SPOCK2 NA NA NA NA NA NA NA NA NA LTS-036 ) 0.145182492578959 129 0.0734894177769412 0.793946731661795 4530 0.203289573101272 2 2 0 -7.30599441134441 LTS-036 NA NA NA NA LTS-036 chr10 75230774 75490588 259815 * c(USP54, PPP3CB, MYOZ1, AGAP5, BMS1P4, SYNPO2L) NA 0 NA 0.956344298945037 375 0.245424345582574 3 NA NA -5.76529682748035 LTS-036 chr10 75490589 75490876 288 * character(0) NA 0 NA 0.788 1 NA NA NA NA NA LTS-036 chr10 75490877 106907440 31416564 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, BMS1P21, KCNIP2-AS1, MIR1287, MIR1307, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, GRID1-AS1, MARK2P9, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR4482, MIR4685, MIR5692C2, LINC00502, PPIF, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, POLR3A, NA NA NA NA NA NA NA NA NA LTS-036 LDB3, HOGA1, CHUK, CHCHD1, PIK3AP1, MORN4, ZFYVE27, COMTD1, FRA10AC1, ANKRD22, SFXN2, BORCS7, NUDT9P1, AGAP11, GSTO2, SFR1, CALHM3, ABCC2, COL17A1, ADK, COX15, CPN1, ACSM6, SAMD8, LIPJ, CFL1P1, DYDC1, EIF5AL1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, FUT11, LINC00858, DNTT, TMEM254-AS1, PLAC9, ZCCHC24, FGF8, CPEB3, NT5C2, PDCD11, SORCS3, ZSWIM8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 WAPL, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, KAT6B, IFIT5, ZNF503-AS1, CALHM1, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, AP3M1, ANKRD1, GHITM, R3HCC1L, POLL, GLUD1, GLUD1P3, GOT1, BLOC1S2, FLJ37201, ZMIZ1-AS1, GRID1, BLNK, HELLS, KCNIP2, HHEX, ANXA11, TLX1, HPS1, HTR7, FFAR4, DUPD1, LIPM, CYP26C1, LRIT2, IDE, IFIT2, IFIT1, IFIT3, FAS, KCNMA1, KIF11, SH2D4B, C10orf99, SLC16A12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 CC2D2B, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf62, C10orf55, LINC00595, MAT1A, LINC00857, LINC00863, IFIT1B, MIR346, NDUFB8, NFKB2, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, DUSP13, PDE6C, SUFU, PGAM1, PITX3, PLAU, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, CNNM2, WBP1L, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, ZMIZ1, PTEN, AS3MT, MIR146B, STAMBPL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SEMA4G, ALDH18A1, ACTA2, RBP4, RGR, AVPI1, HPSE2, RPS24, SCD, MMS19, LOC642361, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, SFTPD, FBXW4, BEND3P3, SFTPA1, BMPR1A, SLIT1, SNCG, SNORA12, TAF5, MIR608, MIR609, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, RPEL1, SFTPA2, VCL, VDAC2, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PDZD7, OBFC1, UBTD1, TMEM254, CFAP43, TNKS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 TRIM8, TSPAN14, KAZALD1, CAMK2G, SFXN3, SLC25A28, ELOVL3, MARVELD1, C10orf11, PCGF6, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, USMG5, ZNF503, ATAD1, ARHGAP19, NDST2, MBL1P, LIPF, ITPRIP, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, INA, PDLIM1, NEURL1, LGI1, NOLC1, CDHR1, DLG5, OPALIN, OPN4, GSTO1, ENTPD1, MINPP1, KIF20B, SEC24C, SH3PXD2A, SLK, ZNF518A) 0.126177662024539 480 0.0825715732792679 0.793891929676592 24155 0.220932575690709 2 2 0 -9.33276554299895 LTS-036 NA NA NA NA LTS-036 chr10 106907441 106907586 146 * SORCS3 0.242 1 NA 0.709219853008297 3 0.114984056865869 2 2 0 -5.76441078987957 LTS-036 chr10 106907587 109654752 2747166 * c(SORCS1, SORCS3) 0.140393635601013 4 0.160305957468835 0.814391744809751 297 0.213100915061386 2 2 0 -7.27796458882923 LTS-036 chr10 109654753 112570130 2915378 * c(ADD3-AS1, SMNDC1, ADD3, DUSP5, RBM20, MXI1, XPNPEP1, SMC3) 0.396415948712417 8 0.167692746244008 1.2600899113299 650 0.290997573104051 4 2 2 -6.74631166231437 LTS-036 chr10 112570131 112596282 26152 * RBM20 0 1 NA 1.33695515675245 71 0.245875970270662 4 4 0 -5.76614126259892 LTS-036 chr10 112596283 114190352 1594070 * c(MIR4680, ADRA2A, PDCD4, RBM20, PDCD4-AS1, GUCY2GP, ACSL5, GPAM, ZDHHC6, RPL13AP6, TECTB, SHOC2, BBIP1) 0.0968032564904129 15 0.195760008562477 1.30103949939708 803 0.350424729641748 4 4 0 -6.75876210040617 LTS-036 chr10 114190353 114200355 10003 * ZDHHC6 0.368 1 NA 1.22937455481014 31 0.258799494772737 4 4 0 -5.76441057137487 LTS-036 chr10 114200356 117824097 3623742 * c(MIR2110, MIR4295, MIR4483, TRUB1, VTI1A, ADRB1, ATRNL1, GFRA1, HABP2, VWA2, NHLRC2, ABLIM1, NRAP, CCDC186, TDRD1, FAM160B1, ZDHHC6, TCF7L2, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.242010308073045 59 0.224523001103555 1.32869332291063 2580 0.315047235001457 4 3 1 -6.88274001300748 LTS-036 chr10 117824098 117824995 898 * GFRA1 NA 0 NA 1.455 1 NA NA NA NA NA LTS-036 chr10 117824996 118641665 816670 * c(PNLIPRP3, C10orf82, HSPA12A, GFRA1, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1) 0.244325912122231 11 0.219191282175679 1.47022889751607 662 0.334367525225461 5 4 1 -6.73386519747118 LTS-036 chr10 118641666 118667346 25681 * c(ENO4, SHTN1) 0.486 1 NA 1.42491794291795 65 0.330566687819801 5 5 0 -5.76469113567965 LTS-036 chr10 118667347 119308575 641229 * c(MIR3663, VAX1, PDZD8, EMX2OS, EMX2, KCNK18, SHTN1, SLC18A2) 0.464679742998877 14 0.0465971748424376 1.44568419044914 559 0.3378701249649 4 2 2 -8.20448897050032 LTS-036 chr10 119308576 119765851 457276 * c(EMX2, RAB11FIP2) 0.442 1 NA 1.23244991950509 49 0.197387572408945 4 4 0 -5.76441072976267 LTS-036 chr10 119765852 120067450 301599 * c(RAB11FIP2, CASC2) 0.005 1 NA 1.32159946411379 153 0.223102835900839 4 4 0 -5.78223717156855 LTS-036 chr10 120067451 120490015 422565 * c(CACUL1, PRLHR, FAM204A) 0 1 NA 1.31789371413269 282 0.232476569257048 4 4 0 -5.7855966028758 LTS-036 chr10 120490016 120513905 23890 * CACUL1 NA 0 NA 0.969 1 NA NA NA NA NA LTS-036 chr10 120513906 121199310 685405 * c(MIR4681, PRDX3, SFXN4, CACUL1, GRK5, NANOS1, SNORA19, EIF3A) 0.201159990467514 10 0.185225508202539 1.0363101921206 512 0.237823180109511 3 3 0 -6.91738626302681 LTS-036 chr10 121199311 121551581 352271 * c(INPP5F, GRK5, RGS10, TIAL1, BAG3) 0.003 1 NA 1.00730944903387 238 0.197676736769122 3 3 0 -5.7704414286558 LTS-036 chr10 121551582 122359257 807676 * c(MIR4682, SEC23IP, PLPP4, INPP5F, MCMBP) 9.15572134733155e-05 13 0.00277350098112615 1.03812182950286 481 0.239523704369641 20 20 0 -20.6212545649002 LTS-036 chr10 122359258 122610639 251382 * WDR11-AS1 0.429 1 NA 1.09351050069155 11 0.198729098386357 3 3 0 -5.81494696814367 LTS-036 chr10 122610640 122618370 7731 * c(WDR11-AS1, WDR11) 0.420111205651095 3 0.00550757054728611 0.967088527431645 22 0.1780738209684 4 2 2 -13.4039443994343 LTS-036 chr10 122618371 122619545 1175 * WDR11 NA 0 NA 1.427 1 NA NA NA NA NA LTS-036 chr10 122619546 123903133 1283588 * c(TACC2, ATE1, FGFR2, NSMCE4A, WDR11) 0.321163703150205 24 0.147329931431641 1.13069802929002 661 0.288717060511806 4 3 1 -6.82692279017864 LTS-036 chr10 123903134 124013604 110471 * TACC2 0.004 1 NA 1.09918517404383 133 0.266970997381172 4 4 0 -5.77650216065693 LTS-036 chr10 124013605 124403107 389503 * c(MIR3941, TACC2, BTBD16, DMBT1, ARMS2, HTRA1, PLEKHA1) 0.0120719520168934 14 0.0822130708037901 1.12144786661292 443 0.292397706334197 4 4 0 -7.18003953290936 LTS-036 chr10 124403108 124457906 54799 * c(DMBT1, C10orf120) 0.418 1 NA 1.05492059687918 29 0.16752688924674 3 3 0 -5.77182233236145 LTS-036 chr10 124457907 127585263 3127357 * c(TEX36-AS1, MIR4296, FAM24B-CUZD1, MIR4484, FAM24A, PSTK, MMP21, CPXM2, CTBP2, FAM24B, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, OAT, CUZD1, CHST15, ZRANB1, DHX32, BCCIP, LHPP, IKZF5, UROS, C10orf88, BUB3, FANK1, FAM53B) 0.282252527358955 67 0.157940752564591 1.08942078113352 2285 0.297910487878154 4 3 1 -7.03877065004544 LTS-036 chr10 127585264 127668751 83488 * c(FANK1-AS1, FANK1) 0 1 NA 1.30007579439206 9 0.363514098763721 4 4 0 -5.76550345417371 LTS-036 chr10 127668752 128114325 445574 * c(LINC00601, C10orf90, ADAM12, FANK1) 0.0579271045427406 15 0.145839768565498 1.16148524536134 354 0.395239848359791 4 4 0 -6.75751863692755 LTS-036 chr10 128114326 128147738 33413 * C10orf90 0.397 1 NA 1.18317593422569 15 0.260974875638031 4 4 0 -5.76489315692433 LTS-036 chr10 128147739 129250570 1102832 * c(C10orf90, DOCK1, FAM196A) 0.2277754300292 16 0.193331138636968 1.09569027836284 469 0.263833508771399 4 3 1 -6.92287685847706 LTS-036 chr10 129250571 129883933 633363 * c(CLRN3, DOCK1, FOXI2, PTPRE, NPS) 0.389192520315911 20 0.125544487816282 0.993085292751105 332 0.328777598656445 3 2 1 -6.78481823288408 LTS-036 chr10 129883934 129894983 11050 * c(MKI67, PTPRE) 0 1 NA 1.05515913208845 9 0.595674990615222 3 3 0 -5.76452916218355 LTS-036 chr10 129894984 129913960 18977 * MKI67 0.0697405797482098 24 0.172132637601171 1.02753818884726 264 0.390918530588308 4 4 0 -6.73937117723462 LTS-036 chr10 129913961 131265666 1351706 * c(MGMT, MKI67) NA 0 NA 0.975988810853834 35 0.103660386022106 3 NA NA -5.76466072049252 LTS-036 chr10 131265667 131334473 68807 * MGMT NA 0 NA 1.134 1 NA NA NA NA NA LTS-036 chr10 131334474 131506192 171719 * MGMT 0.375 1 NA 1.17739429824979 9 0.105640243804675 4 4 0 -5.78338713728028 LTS-036 chr10 131506193 134693010 3186818 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.288152991503884 52 0.165507255380876 1.14673132585651 1341 0.292676536782628 4 3 1 -6.84603062025729 LTS-036 chr10 134693011 134756013 63003 * CFAP46 0.282114957201571 12 0.158032481317972 0.62379337588559 172 0.187539677926975 1 1 0 -6.92178078924446 LTS-036 chr10 134756014 134884516 128503 * c(LINC01168, CFAP46, ADGRA1) 0.005 1 NA 0.441442785269472 11 0.389566752361459 1 1 0 -5.76513628991837 LTS-036 chr10 134884517 134884546 30 * ADGRA1 0.01 1 NA 0.015 1 NA NA NA NA NA LTS-036 chr10 134884547 134884560 14 * ADGRA1 NA 0 NA 1.51 1 NA NA NA NA NA LTS-036 chr10 134884561 135016175 131615 * c(ADGRA1, KNDC1) 0.0174851449842331 19 0.0981513927890621 1.14583635512196 285 0.304091755194005 5 5 0 -6.95494598163375 LTS-036 chr10 135016176 135020315 4140 * KNDC1 0.383 1 NA 1.11139800186683 7 0.116509962786757 4 4 0 -5.76635393520673 LTS-036 chr10 135020316 135381888 361573 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, SPRN, CALY, MIR202, SCART1, UTF1, KNDC1, MTG1, SYCE1) 0.162404115623666 10 0.196337125034128 1.07883759949695 1068 0.249381934871963 3 3 0 -6.81953839666915 LTS-036 chr10 135381889 135437421 55533 * c(SPRNP1, SYCE1) NA 0 NA 0.324 1 NA NA NA NA NA LTS-036 chr10 135437422 135473026 35605 * FRG2B 0.305931168970248 6 0.0477283982551269 0.692806084732568 47 0.528262378568213 7 5 2 -6.81854429262341 LTS-036 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.592 1 NA NA NA NA NA LTS-036 chr11 193025 193096 72 * SCGB1C1 0.441 1 NA 0.486 1 NA NA NA NA NA LTS-036 chr11 193097 1012013 818917 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.33263510781541 104 0.132843104532967 0.791433984015529 2910 0.236982776490677 2 1 1 -6.90993235775606 LTS-036 chr11 1012014 1576283 564270 * c(AP2A2, DUSP8, TOLLIP-AS1, MUC2, MUC6, TOLLIP, MUC5B, MOB2, BRSK2) 0.314485925132516 153 0.117064521385357 0.903654612323508 1444 0.342880999449629 3 2 1 -6.81226016425707 LTS-036 chr11 1576284 1576302 19 * c(DUSP8, MOB2) NA 0 NA 0.656 1 NA NA NA NA NA LTS-036 chr11 1576303 3714489 2138187 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, KCNQ1DN, CHRNA10, MRPL23, MIR483, TSSC2, SNORA54, TH, TNNI2, TNNT3, TRPC2, NA NA NA NA NA NA NA NA NA LTS-036 INS-IGF2, PHLDA2, ZNF195, MOB2, CARS, SYT8, CD81) 0.325762162525098 107 0.151477907099583 0.822913047574673 2412 0.203315758525655 2 1 1 -7.36740321251665 LTS-036 NA NA NA NA LTS-036 chr11 3714490 3829419 114930 * c(PGAP2, NUP98) 0.247 1 NA 0.756176511167495 177 0.194932114202371 2 2 0 -5.76972282427641 LTS-036 chr11 3829420 5068431 1239012 * c(LOC100506082, MIR4687, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, OR51A2, TRIM68, MMP26, RRM1, TRIM21, STIM1, OR51G1, OR51G2, OR51E2) 0.246999611395109 81 0.167985025603952 0.849661517925718 1267 0.302688127638508 3 2 1 -7.10941823535488 LTS-036 chr11 5068432 5080234 11803 * c(OR52E2, OR52J3) 0.427 1 NA 0.81295014571057 15 0.201103550677849 2 2 0 -5.76721182915884 LTS-036 chr11 5080235 5269343 189109 * c(OR52E2, OR52A1, OR51V1, HBB, HBBP1, HBD, OR52A5) 0.417179422735408 9 0.0546132869465949 0.802636033554329 200 0.176838718716196 2 1 1 -6.98326948302876 LTS-036 chr11 5269344 5322520 53177 * c(HBE1, HBG1, HBG2, OR51B4) 0 1 NA 0.840547628616837 79 0.93961841803083 3 3 0 -5.76519706191699 LTS-036 chr11 5322521 5364450 41930 * c(OR51B5, HBE1, HBG2, OR51B4, OR51B2) 0.0554288278068227 10 0.165079139270297 1.01615873125087 68 0.506377920895897 5 5 0 -6.75168720687035 LTS-036 chr11 5364451 5364742 292 * c(OR51B5, HBE1, HBG2) 0.44 1 NA 0.97353642031315 7 0.0756029729826118 3 3 0 -5.76441014935285 LTS-036 chr11 5364743 5424838 60096 * c(OR51B5, HBE1, HBG2, OR51B6, OR51M1) 0.333058427463786 13 0.163607841013277 0.85878637905261 82 0.25464102209876 3 2 1 -6.75042385454991 LTS-036 chr11 5424839 5443442 18604 * c(OR51B5, HBE1, HBG2, OR51Q1) 0.004 1 NA 0.593436112868817 5 0.33266123910068 2 2 0 -5.76798104107113 LTS-036 chr11 5443443 5537520 94078 * c(UBQLNL, OR51B5, HBE1, HBG2, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3) 0.168207278006796 13 0.197288055703017 0.921995873751968 222 0.299053277060948 2 2 0 -6.78318726987117 LTS-036 chr11 5537521 5549470 11950 * c(UBQLNL, HBG2) 0.418 1 NA 0.939054357261945 15 0.189888689199 3 3 0 -5.76467873860933 LTS-036 chr11 5549471 6415463 865993 * c(TRIM22, PRKCDBP, TRIM6, OR52W1, OR56A4, OR56A1, CNGA4, C11orf42, OR56B4, OR52B2, HBG2, OR52L1, OR52B6, OR56B1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM6-TRIM34, TRIM34, SMPD1, OR52N1, FAM160A2, TRIM5, CCKBR) 0.328754480989472 71 0.14398870959539 0.821187720978437 1261 0.761115586369349 3 2 1 -6.77554154819805 LTS-036 chr11 6415464 6462087 46624 * c(APBB1, HPX, SMPD1) 0 1 NA 0.789332264632154 167 0.176571257744275 2 2 0 -5.77284794354827 LTS-036 chr11 6462088 6630833 168746 * c(TRIM3, DNHD1, RRP8, ARFIP2, TIMM10B, HPX, ILK) 0.138938686864251 22 0.186317613892925 0.807922212200396 848 0.211977500018466 2 2 0 -6.76568594948942 LTS-036 chr11 6630834 6631016 183 * ILK 0.415 1 NA 0.899562056452875 5 0.109203937657943 3 3 0 -5.76446832977301 LTS-036 chr11 6631017 6740462 109446 * c(TPP1, ILK, GVINP1, MRPL17, TAF10, DCHS1) 0.384413322207795 40 0.0741477388696862 0.786009688951279 614 0.180361012770205 2 1 1 -6.75039067377289 LTS-036 chr11 6740463 6816778 76316 * c(OR2AG1, OR2AG2, GVINP1, OR6A2) 0.006 1 NA 0.778819231706492 79 0.228198689740653 2 2 0 -5.77055430135125 LTS-036 chr11 6816779 7335424 518646 * c(OR2D3, OR2D2, SYT9, OR10A5, RBMXL2, OR10A4, NLRP14, OR10A2, ZNF214, ZNF215, OR6A2) 0.125735297449023 19 0.166876937533926 0.766268451500618 458 0.248707604320896 2 2 0 -6.76179566770173 LTS-036 chr11 7335425 7439264 103840 * SYT9 0.48 1 NA 0.821536206797634 11 0.0938192653214389 2 2 0 -5.8944637439224 LTS-036 chr11 7439265 9069046 1629782 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, OLFML1, LOC283299, NLRP10, OVCH2, OR10A6, LMO1, TMEM9B-AS1, CYB5R2, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, RPL27A, SNORA3A, STK33, ST5, SNORA3B, TUB, RIC3, PPFIBP2, EIF3F, TRIM66) 0.303827497803025 111 0.145089586829614 0.835330965239383 2254 0.21702825124032 3 2 1 -7.25493481215059 LTS-036 chr11 9069047 9192702 123656 * c(MIR5691, DENND5A, KRT8P41, SCUBE2) 0 1 NA 0.875969143618546 189 2.44486575392418 3 3 0 -5.7645503817281 LTS-036 chr11 9192703 9607032 414330 * c(IPO7, DENND5A, TMEM41B, LOC644656, SNORA23, WEE1, ZNF143) 0.104362264767843 9 0.182924012760612 0.793233374359906 533 0.266812064131921 2 2 0 -6.79501137474145 LTS-036 chr11 9607033 9805846 198814 * c(SWAP70, SBF2-AS1, LOC440028, WEE1, SBF2) 0.407 1 NA 0.777246935437757 231 0.219327185340188 2 2 0 -5.78088211459935 LTS-036 chr11 9805847 12225946 2420100 * c(MRVI1-AS1, MIR4299, MTRNR2L8, MRVI1, LYVE1, ADM, EIF4G2, DKK3, AMPD3, SBF2-AS1, CSNK2A3, GALNT18, RNF141, USP47, ZBED5, SNORD97, ZBED5-AS1, SBF2, MICAL2, CTR9) 0.379605968338547 36 0.111459876046288 0.813189531911727 1481 0.176671249733815 2 1 1 -7.40234360230653 LTS-036 chr11 12225947 12225957 11 * MICAL2 NA 0 NA 1.072 1 NA NA NA NA NA LTS-036 chr11 12225958 12959636 733679 * c(PARVA, TEAD1, MICALCL, MICAL2) 0.465874535511975 5 0.026429150572805 1.11246492308636 437 0.293769297999585 4 2 2 -9.96059444070098 LTS-036 chr11 12959637 12960926 1290 * TEAD1 0.428291585282133 2 0.0240416305603426 1.01309895688517 30 0.254556149667089 4 2 2 -8.24321158355678 LTS-036 chr11 12960927 13400051 439125 * c(LINC00958, ARNTL, RASSF10, TEAD1) 0 1 NA 0.964723208117598 229 0.171760223535688 3 3 0 -5.76526558856257 LTS-036 chr11 13400052 14632570 1232519 * c(SPON1, COPB1, RRAS2, ARNTL, PSMA1, PTH, FAR1, BTBD10) 0.20345422045044 13 0.231148803221581 0.923489699598908 612 0.239963275718625 3 3 0 -6.87592486928485 LTS-036 chr11 14632571 14666116 33546 * c(PDE3B, PSMA1) 0.5 1 NA 0.931869217461232 21 0.195425067846623 3 3 0 -5.76545058836976 LTS-036 chr11 14666117 17452492 2786376 * c(OR7E14P, C11orf58, CYP2R1, PLEKHA7, NCR3LG1, KCNJ11, INSC, NUCB2, PDE3B, PIK3C2A, SOX6, RPS13, ABCC8, CALCA, CALCB) 0.441361572868723 36 0.108966559600233 0.991110868029754 1506 0.649254408389255 4 2 2 -7.07262664877593 LTS-036 chr11 17452493 17491571 39079 * ABCC8 0 1 NA 0.986866925007382 47 0.319617024817502 3 3 0 -5.76444836600572 LTS-036 chr11 17491572 17803711 312140 * c(USH1C, OTOG, KCNC1, MYOD1, ABCC8) 0.257368628620601 17 0.237471298575341 1.03517278451615 743 0.256332445924072 4 3 1 -6.82964076248656 LTS-036 chr11 17803712 17948311 144600 * c(SERGEF, KCNC1) 0.475 1 NA 0.958728832811343 39 0.16352729264131 3 3 0 -5.76524273913927 LTS-036 chr11 17948312 26563464 8615153 * c(LOC100126784, CCDC179, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, DBX1, SPTY2D1, TMEM86A, LDHAL6A, ANO5, FANCF, SVIP, MRGPRX1, GAS2, SERGEF, IGSF22, GTF2H1, LUZP2, LDHA, LDHC, NAV2-AS4, NELL1, LOC494141, ZDHHC13, UEVLD, SLC17A6, SAA1, SAA2, SAA3P, SAA4, ANO3, TPH1, TSG101, E2F8, CSRP3, PTPN5, NAV2, SLC6A5) 0.342838073261446 105 0.179179007326937 0.968361601066414 3507 0.239722952806096 3 2 1 -6.73807853271246 LTS-036 chr11 26563465 26568966 5502 * ANO3 0 1 NA 1.25027293867534 5 0.386498771020038 4 4 0 -5.76441487584932 LTS-036 chr11 26568967 26684012 115046 * c(MUC15, ANO3) 0.163671639114781 14 0.231369121383279 1.03502663797315 194 0.324722759267344 3 3 0 -6.77344848003398 LTS-036 chr11 26684013 26684143 131 * ANO3 0.435 1 NA 1.11632127126221 3 0.280913391160573 4 4 0 -5.76441975874092 LTS-036 chr11 26684144 32457180 5773037 * c(DCDC5, LINC00678, DNAJC24, ARL14EP, SLC5A12, METTL15, IMMP1L, FSHB, ELP4, DCDC1, KCNA4, FIBIN, DKFZp686K1684, BDNF-AS, PAX6, LIN7C, LGR4, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, KIF18A, BBOX1, CCDC34) 0.336128819076948 63 0.196972137728854 0.985503752190625 2259 0.265363046627529 3 2 1 -6.74375710428005 LTS-036 chr11 32457181 32460364 3184 * WT1-AS NA 0 NA 0.82 1 NA NA NA NA NA LTS-036 chr11 32460365 32675610 215246 * c(EIF3M, CCDC73, WT1-AS) 0.388727864651476 7 0.0470273476667718 0.769397088245745 192 0.164119634217643 2 1 1 -6.76156910702748 LTS-036 chr11 32675611 32676397 787 * CCDC73 NA 0 NA 2.036 1 NA NA NA NA NA LTS-036 chr11 32676398 33078230 401833 * c(CCDC73, TCP11L1, PRRG4, QSER1, DEPDC7) 0.35276228172241 10 0.144409756518657 0.927847767786713 501 0.218510621728975 3 2 1 -6.7450124376889 LTS-036 chr11 33078231 33078643 413 * TCP11L1 0 1 NA 1.3878461949792 4 0.332867841642896 5 5 0 -5.76442138245428 LTS-036 chr11 33078644 33581306 502663 * c(HIPK3, CSTF3, KIAA1549L, LINC00294, CSTF3-AS1, TCP11L1) 0.17639253579257 10 0.242414337676448 0.994918174808385 440 0.228068308686697 3 3 0 -6.78683675217677 LTS-036 chr11 33581307 33604960 23654 * KIAA1549L 0.404 1 NA 0.981181950860877 19 0.0933946540413784 3 3 0 -5.7644928217455 LTS-036 chr11 33604961 35278959 1673999 * c(C11orf91, MIR1343, ELF5, KIAA1549L, ABTB2, FBXO3, EHF, LMO2, CAPRIN1, APIP, NAT10, SLC1A2, PDHX, CAT, CD44, CD59) 0.392015358760688 52 0.138898673964006 0.930457330268629 1720 0.246257050555553 3 2 1 -6.81568810698247 LTS-036 chr11 35278960 35280852 1893 * SLC1A2 0 1 NA 0.896642002238567 31 0.152797124614053 3 3 0 -5.76474485647138 LTS-036 chr11 35280853 36311014 1030162 * c(MIR3973, LDLRAD3, FJX1, PAMR1, COMMD9, TRIM44, SLC1A2) 0.244960161163558 16 0.231010245083055 0.959783439548446 553 0.533011911678524 3 2 1 -6.86107491635123 LTS-036 chr11 36311015 36472800 161786 * PRR5L 0.4 1 NA 0.989558004770311 41 0.130898424593177 3 3 0 -5.76579371899114 LTS-036 chr11 36472801 46098400 9625600 * c(MIR670, LOC100507205, ALKBH3-AS1, LOC100507384, C11orf74, LARGE2, CRY2, C11orf94, EXT2, ALKBH3, LOC221122, CD82, DKFZp779M0652, C11orf96, ACCSL, HNRNPKP3, MIR129-2, HSD17B12, PHF21A, SLC35C1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, ALX4, TRAF6, SEC14L1P1, PRR5L, ACCS, CHST1, API5, TSPAN18, PEX16, MAPK8IP1, TP53I11) 0.343795117328723 37 0.172978187796767 0.972406223548814 2454 0.230964207234839 3 2 1 -6.73496306275676 LTS-036 chr11 46098401 46100654 2254 * PHF21A NA 0 NA 1.494 1 NA NA NA NA NA LTS-036 chr11 46100655 47447583 1346929 * c(MIR3160-2, MIR3160-1, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, DDB2, F2, HARBI1, PACSIN3, ARHGAP1, LRP4, MDK, MYBPC3, PHF21A, ACP2, AMBRA1, PSMC3, SPI1, SNORD67, C11orf49, ZNF408, ARFGAP2, DGKZ, MADD, CREB3L1, SLC39A13, ATG13, CKAP5) 0.376013759210712 33 0.126112120929967 1.14244916054535 2468 0.261136116004744 4 2 2 -6.80282364072759 LTS-036 chr11 47447584 47447716 133 * PSMC3 NA 0 NA 1.02 1 NA NA NA NA NA LTS-036 chr11 47447717 48328644 880928 * c(CELF1, C1QTNF4, PTPMT1, OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4S1, OR4X1, FAM180B, NDUFS3, KBTBD4, PSMC3, PTPRJ, RAPSN, AGBL2) 0.37047779014883 22 0.0966937415434921 1.06408664481287 1203 0.235017480905256 3 2 1 -6.82703493058418 LTS-036 chr11 48328645 48346419 17775 * OR4S1 NA 0 NA 1.01649747183982 4 0.0597829407105405 3 NA NA -5.76979219768507 LTS-036 chr11 48346420 48346423 4 * character(0) 0.37 1 NA 1.594 1 NA NA NA NA NA LTS-036 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.321864931223186 116 0.0556223201938586 1.45072871726474 193 0.370870441735532 7 5 2 -6.80708298117687 LTS-036 chr11 48388718 48388748 31 * character(0) NA 0 NA 1.129 1 NA NA NA NA NA LTS-036 chr11 48388749 51526755 3138007 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.283721545718383 22 0.197862035978065 1.14021583066898 460 0.340617065205791 4 3 1 -6.82956835192836 LTS-036 chr11 51526756 51527703 948 * character(0) NA 0 NA 1.1356174180275 6 0.0730362923483935 4 NA NA -5.76511821068611 LTS-036 chr11 55035776 55035862 87 * TRIM48 0 1 NA 2.549 1 NA NA NA NA NA LTS-036 chr11 55035863 55111701 75839 * c(TRIM51HP, TRIM48, OR4A16) 0.006 1 NA 1.68866988554288 41 0.569051208634847 6 6 0 -5.76457685843844 LTS-036 chr11 55111702 55111722 21 * character(0) NA 0 NA 1.141 1 NA NA NA NA NA LTS-036 chr11 55111723 55339798 228076 * c(OR4C16, OR4C15, OR4A15) 0.306019617880444 12 0.209000271857152 1.15943449828742 65 0.426201352401024 4 3 1 -6.7392806555218 LTS-036 chr11 55339799 55340466 668 * OR4C16 0.472 1 NA 1.11259176920701 16 0.0810756591092542 4 4 0 -5.76504375622502 LTS-036 chr11 55340467 56000581 660115 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR5L2, OR10AG1, OR5J2, OR5F1, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR8J3, OR4P4, TRIM51) 0.435168960558191 60 0.0677039167181859 1.15744290812086 572 0.227959219463279 4 2 2 -7.0774440541431 LTS-036 chr11 56000582 56015479 14898 * OR5T2 0 1 NA 1.32489118432362 11 0.328276546389002 4 4 0 -5.76484747126693 LTS-036 chr11 56015480 56143690 128211 * c(OR8H1, OR8K3, OR8J1, OR5T3, OR5T1, OR8K1, OR8U8) 0.19094215676051 19 0.180965280505787 1.18418914802834 176 0.305678307902406 5 4 1 -6.82393364585567 LTS-036 chr11 56143691 56143751 61 * OR8U8 NA 0 NA 0.98 1 NA NA NA NA NA LTS-036 chr11 56143752 57228198 1084447 * c(PRG3, APLNR, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR9G4, SLC43A3, OR5AP2, OR5M9, OR5M10, OR5M1, OR5AK2, P2RX3, OR8U8, OR9G9, PRG2, SSRP1, TNKS1BP1) 0.241342407881746 54 0.130988031630635 1.01094562300545 1027 0.250864716824942 3 2 1 -7.15162936999138 LTS-036 chr11 57228199 57228338 140 * character(0) NA 0 NA 1.414 1 NA NA NA NA NA LTS-036 chr11 57228339 57563991 335653 * c(TMX2-CTNND1, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, RTN4RL2, MIR130A, TMX2, BTBD18, SERPING1, SLC43A1, UBE2L6) 0.184636547771193 9 0.215266178899003 1.12718206576448 778 0.227595682436513 4 4 0 -6.89301324789152 LTS-036 chr11 57563992 57585662 21671 * c(TMX2-CTNND1, CTNND1) 0.429 1 NA 1.07156346160324 131 0.224554887967115 3 3 0 -5.76674833031948 LTS-036 chr11 57585663 59480951 1895289 * c(MIR3162, TMX2-CTNND1, GLYAT, CNTF, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, DTX4, LOC283194, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OR5B3, OSBP, FAM111A, ZFP91, OR10W1, GLYATL1, LPXN) 0.412124656073443 50 0.0709624793069391 1.1230336788939 1633 0.220805978987403 4 2 2 -7.01454428689225 LTS-036 chr11 59480952 59611561 130610 * c(GIF, OR10V1, MRPL16, STX3, OR10V2P) 0 1 NA 1.17437459979944 177 0.247554775316957 4 4 0 -5.76735214808955 LTS-036 chr11 59611562 59863129 251568 * c(OOSP2, MS4A2, GIF, TCN1, MS4A3) 0.264879800834612 9 0.17139460642363 1.13163801100778 236 0.202660280003845 4 3 1 -6.77248150878723 LTS-036 chr11 59863130 62375773 2512644 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, EEF1G, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, MS4A6E, FTH1, EML3, TKFC, DKFZP434K028, PRPF19, LINC00301, MS4A10, INCENP, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, MS4A13, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, SDHAF2, TMEM132A, VPS37C, MS4A7, RAB3IL1, MS4A6A, MS4A5, PGA3, PGA4, TUT1, MIR611, SCGB1A1, BEST1, MYRF, NA NA NA NA NA NA NA NA NA LTS-036 TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, MS4A8, MS4A14, SYT7, CD5, MTA2, CD6, MS4A1, FADS2) 0.225488602787509 112 0.141755941758395 0.985363716436803 4608 0.245380417790189 3 3 0 -7.1396102376139 LTS-036 NA NA NA NA LTS-036 chr11 62375774 63681648 1305875 * c(HNRNPUL2-BSCL2, RTN3, NXF1, TAF6L, PLA2G16, CHRM1, SLC22A9, HRASLS5, C11orf84, MARK2, LRRN4CL, HNRNPUL2, GANAB, SNHG1, EML3, ATL3, B3GAT3, BSCL2, GNG3, TTC9C, SLC22A24, RCOR2, TMEM179B, SLC22A25, SLC22A10, UBXN1, POLR2G, WDR74, HRASLS2, RARRES3, ROM1, SLC3A2, C11orf95, STX5, SNORA57, METTL12, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, LGALS12, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, NA NA NA NA NA NA NA NA NA LTS-036 SNORD22, SLC22A6, SLC22A8) 0.267719142656693 32 0.140173420096725 0.930410416636451 2852 0.208940096078319 3 2 1 -6.98317783617152 LTS-036 NA NA NA NA LTS-036 chr11 63681649 63706474 24826 * c(RCOR2, NAA40) 0 1 NA 1.03770816970512 41 0.198620102512186 3 3 0 -5.76591503155957 LTS-036 chr11 63706475 64129341 422867 * c(STIP1, COX8A, ESRRA, FKBP2, FLRT1, PRDX5, TEX40, PPP1R14B, CCDC88B, MACROD1, DNAJC4, KCNK4, TRMT112, PLCB3, OTUB1, GPR137, BAD, VEGFB, NAA40, FERMT3, TRPT1, NUDT22, RPS6KA4) 0.00597549440593239 12 0.0765724058217667 0.934078245192454 1306 0.214394990470865 3 3 0 -7.61213439105208 LTS-036 chr11 64129342 64846569 717228 * c(NAALADL1, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, EHD1, CDCA5, BATF2, SLC22A12, GPHA2, ATG2A, MAJIN, SAC3D1, ARL2, MIR192, MIR194-2, MEN1, PPP2R5B, CDC42BPG, SLC22A11, PYGM, MAP4K2, SF1, RPS6KA4, NRXN2) 0.0734989940504431 25 0.150981599320359 0.98416814197269 2050 0.323830982353189 3 3 0 -6.75986420728359 LTS-036 chr11 64846570 64898226 51657 * c(TMEM262, CDCA5, FAU, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, SYVN1) 0.297 1 NA 0.936229525120823 383 0.199152141811608 3 3 0 -5.76564576016088 LTS-036 chr11 64898227 65034205 135979 * c(POLA2, SPDYC, SLC22A20, CAPN1, SYVN1) 0.361687734833692 8 0.0369127833064451 0.986454106042718 319 0.187990461868873 3 2 1 -6.76939287967979 LTS-036 chr11 65034206 65034927 722 * POLA2 NA 0 NA 1.081 1 NA NA NA NA NA LTS-036 chr11 65034928 65268377 233450 * c(CDC42EP2, TIGD3, POLA2, SLC25A45, NEAT1, MALAT1, DPF2, FRMD8) 0.240300723269655 7 0.13013765605623 1.10897299826836 529 0.242890638878671 4 3 1 -6.84590697728469 LTS-036 chr11 65268378 65667796 399419 * c(MIR4489, MIR4690, KCNK7, KAT5, SSSCA1, CFL1, CCDC85B, CTSW, FAM89B, SSSCA1-AS1, EHBP1L1, SNX32, EFEMP2, MALAT1, PCNX3, LTBP3, MAP3K11, OVOL1, SCYL1, RELA, SIPA1, MUS81, FOSL1, RNASEH2C, AP5B1, FIBP) 0.313642397801698 39 0.0761421268535453 0.949127569158348 1860 0.211299177118625 3 2 1 -6.88991464449297 LTS-036 chr11 65667797 65732800 65004 * c(DRAP1, TSGA10IP, FOSL1, C11orf68, SART1) 0.026 1 NA 0.966536285810822 159 0.275091511360568 3 3 0 -5.76444238211064 LTS-036 chr11 65732801 65825951 93151 * c(SF3B2, CATSPER1, CST6, EIF1AD, BANF1, GAL3ST3, SART1) 8.53436758680956e-05 9 0.00333333333333333 0.930858712537611 379 0.345975082689888 20 20 0 -14.3493007902607 LTS-036 chr11 65825952 65826615 664 * SF3B2 0.296 1 NA 0.818657904986591 9 0.0975573905167848 2 2 0 -5.7651552033326 LTS-036 chr11 65826616 67165760 1339145 * c(LOC100130987, RBM14-RBM4, DPP3, RBM14, YIF1A, SF3B2, B4GAT1, GRK2, KDM2A, CLCF1, PELI3, CNIH2, ZDHHC24, C11orf86, TMEM151A, BRMS1, NPAS4, RHOD, SLC29A2, ANKRD13D, PC, SSH3, PPP1CA, CCDC87, PACS1, CD248, POLD4, BBS1, RAD9A, RBM4, KLC2, MRPL11, SPTBN2, LRFN4, C11orf80, RAB1B, RBM4B, CTSF, ACTN3, SYT12, RIN1, CCS, RCE1) 0.262722795000642 30 0.139980031416636 0.970003174796999 3174 0.214289414084689 3 2 1 -6.97113551918589 LTS-036 chr11 67165761 67177471 11711 * c(TBC1D10C, PPP1CA, RAD9A) 0.01 1 NA 0.943405097937111 85 0.268493189852553 3 3 0 -5.76451076807788 LTS-036 chr11 67177472 67372593 195122 * c(CDK2AP2, GSTP1, TBC1D10C, GPR152, CABP2, PPP1CA, CABP4, CORO1B, CARNS1, PTPRCAP, RPS6KB2, TMEM134, AIP, PITPNM1) 0.0156972988374883 13 0.101510135909217 0.953376141904228 713 0.214134609851011 4 4 0 -7.15355478477726 LTS-036 chr11 67372594 67430589 57996 * c(ALDH3B2, NUDT8, TBX10, DOC2GP, NDUFV1, ACY3) 0.325 1 NA 0.970076798785262 183 0.21255506391818 3 3 0 -5.76442407065139 LTS-036 chr11 67430590 77301162 9870573 * c(KCNE3, LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, TPBGL, MIR4696, MIR4691, MIR4692, IL18BP, SHANK2-AS1, TCIRG1, POLD3, STARD10, NEU3, CHKA, SLCO2B1, SNORD15B, MRGPRD, MRGPRF, ARAP1, CPT1A, XRRA1, DHCR7, B3GNT6, CTTN, MRPL21, TPCN2, GDPD4, ORAOV1, SHANK2-AS3, LRTOMT, ALDH3B1, ALDH3B2, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, TSKU, C2CD3, LRRC32, NA NA NA NA NA NA NA NA NA LTS-036 MYEOV, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, ALG1L9P, OR2AT4, IGHMBP2, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, GUCY2EP, FLJ42102, PHOX2A, LRP5, MIR139, ARRB1, MAP6, KRTAP5-7, KRTAP5-11, MIR326, MYO7A, NDUFS8, NUMA1, OMP, P2RY2, P2RY6, PAK1, GAL, KMT5B, COA4, PDE2A, PPME1, MRPL48, C11orf24, LAMTOR1, ANO1, NADSYN1, FAM86C1, PPP6R3, RNF121, ACER3, THAP12, EMSY, KRTAP5-8, PLEKHB1, RAB6A, CCND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SNORD15A, RPS3, FAM86C2P, CAPN5, UCP2, UCP3, UVRAG, WNT11, MOGAT2, PAAF1, GDPD5, CLPB, UNC93B1, DGAT2, RELT, PPFIA1, SERPINH1, FADD, ATG16L2, TESMIN, SPCS2, ARHGEF17, FCHSD2, FGF19) 0.239573550206323 214 0.137407596403806 0.973865992257639 9973 0.239111286915966 3 2 1 -7.11390834105571 LTS-036 NA NA NA NA LTS-036 chr11 77301163 77907744 606582 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, AQP11, KCTD21, AAMDC, NDUFC2, RSF1, USP35, KCTD14, THRSP, ALG8, INTS4) 0.365426552210957 9 0.191338995270465 1.10957787549186 799 0.254435125902202 4 2 2 -6.80022617123723 LTS-036 chr11 77907745 77909014 1270 * USP35 0 1 NA 1.15515805769653 7 0.207475644009466 4 4 0 -5.76448366572395 LTS-036 chr11 77909015 77992002 82988 * c(USP35, GAB2) 1.87944016465745e-05 15 0.00103279555898864 1.21342674181218 262 0.254620715599223 20 20 0 -21.2379405357224 LTS-036 chr11 77992003 78128685 136683 * GAB2 NA 0 NA 1.043 1 NA NA NA NA NA LTS-036 chr11 78128686 78285875 157190 * c(NARS2, GAB2) 0.000142687476099347 4 0.0015 0.881639687653626 80 0.155125151597759 20 20 0 -22.6387693922976 LTS-036 chr11 78285876 78364513 78638 * c(TENM4, NARS2) 0.296 1 NA 0.912770162760135 17 0.201407565282293 3 3 0 -5.76934221277012 LTS-036 chr11 78364514 82443166 4078653 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4) 0.244911973598516 6 0.189449729479881 1.0290315271213 355 0.238934335928292 3 2 1 -7.04674192273195 LTS-036 chr11 82443167 89608204 7165038 * c(SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, RAB38, RAB30, GRM5, ANKRD42, TRIM77, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, TRIM49, CREBZF, CCDC90B, CCDC81, TRIM64B, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.246338126242025 64 0.137388756406428 0.895022241044972 3397 0.213521673622849 3 2 1 -7.68324263446767 LTS-036 chr11 89608205 89707604 99400 * c(TRIM64, TRIM64B) NA 0 NA 8.865 1 NA NA NA NA NA LTS-036 chr11 89707605 93148154 3440550 * c(NAALAD2, MIR4490, SLC36A4, FAT3, DEUP1, CHORDC1, MTNR1B, TRIM49C, UBTFL1) 0.280559027056013 26 0.125987478010256 0.986934268176235 988 0.406426570578084 3 2 1 -6.92525932289474 LTS-036 chr11 93148155 93212245 64091 * c(DEUP1, SMCO4) 0 1 NA 0.986917282259847 39 0.230136109465447 3 3 0 -5.76453203056024 LTS-036 chr11 93212246 93529655 317410 * c(MIR1304, C11orf54, SMCO4, SCARNA9, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295, MED17) 0.0330946646957404 10 0.1074161688636 0.985690422003434 518 0.225936374989544 3 3 0 -6.99271808824223 LTS-036 chr11 93529656 93552855 23200 * MED17 0.317 1 NA 0.930295827071321 101 0.23041349013381 3 3 0 -5.7649679139942 LTS-036 chr11 93552856 100864367 7311512 * c(MIR1260B, JRKL-AS1, GPR83, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, ENDOD1, PANX1, FUT4, HEPHL1, VSTM5, IZUMO1R, KDM4E, MRE11A, CWC15, CNTN5, ANKRD49, KDM4D, C11orf97, CCDC82, TMEM133, MAML2, JRKL, MTMR2, CEP57) 0.286173330646889 80 0.108841191941705 0.942987566814552 2622 0.215926670676244 3 2 1 -7.04691993667246 LTS-036 chr11 100864368 100900716 36349 * c(PGR, TMEM133) 0 1 NA 0.8714693921406 17 0.186709352612399 3 3 0 -5.77217053531732 LTS-036 chr11 100900717 102737192 1836476 * c(WTAPP1, MIR3920, LOC101054525, YAP1, TMEM123, ANGPTL5, BIRC2, BIRC3, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, PGR, CEP126, MMP27, TRPC6, C11orf70, MMP20) 0.114389374890912 40 0.162883283680567 0.923129205050314 1713 0.216703163576187 3 3 0 -6.80222613100642 LTS-036 chr11 102737193 102814110 76918 * c(MMP12, MMP13) 0.287 1 NA 0.898597248761195 43 0.252586853367132 3 3 0 -5.76912825693228 LTS-036 chr11 102814111 107834107 5019997 * c(CASP12, MIR4693, CARD16, KBTBD3, CWF19L2, GRIA4, GUCY1A2, DDI1, MMP13, CARD17, SLC35F2, RAB39A, ELMOD1, CARD18, AASDHPPT, LOC643733, LOC643923, SLN, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, DCUN1D5, MSANTD4, ALKBH8) 0.289469148708203 52 0.118759926154961 0.934125583667321 2099 0.24323896061438 3 2 1 -6.98661356771645 LTS-036 chr11 107834108 107917087 82980 * c(RAB39A, CUL5) 0.018 1 NA 0.907861124779668 29 0.15695835003376 3 3 0 -5.77444853656833 LTS-036 chr11 107917088 108381247 464160 * c(KDELC2, C11orf65, EXPH5, ACAT1, ATM, NPAT, CUL5) 0.00108539209059917 16 0.00319374388453426 0.963498142471521 1020 0.21754489747941 20 20 0 -18.8811796937435 LTS-036 chr11 108381248 108409784 28537 * EXPH5 0.376 1 NA 0.918375122410678 103 0.118351287371703 3 3 0 -5.76866546649212 LTS-036 chr11 108409785 111724133 3314349 * c(LOC100132078, MIR4491, COLCA2, LAYN, DDX10, FDX1, EXPH5, SIK2, C11orf53, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, POU2AF1, BTG4, PPP2R1B, ARHGAP20, RDX, ALG9, ZC3H12C) 0.265355669825356 19 0.134575138254647 0.943990392410194 1813 0.237829613143936 3 2 1 -7.0099718898977 LTS-036 chr11 111724134 111747297 23164 * c(ALG9, FDXACB1) 0 1 NA 0.918806275963449 83 0.167757500282311 3 3 0 -5.76610278761923 LTS-036 chr11 111747298 111782697 35400 * c(CRYAB, C11orf1, ALG9, FDXACB1) 0.0695696058786193 9 0.12021970627887 0.965350232309209 145 0.206439090262735 4 4 0 -6.77071033955957 LTS-036 chr11 111782698 111783100 403 * character(0) 0.362 1 NA 0.884190738789421 5 0.184609858891664 3 3 0 -5.76447666404811 LTS-036 chr11 111783101 119217311 7434211 * c(LOC100131626, NCAM1-AS1, BACE1-AS, MIR4301, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, PIH1D2, NXPE1, NXPE2, JAML, TTC36, DDX6, DLAT, DPAGT1, DRD2, MPZL3, CEP164, PHLDB1, SIK3, BACE1, CADM1, SLC37A4, ANKK1, RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, APOC3, PLET1, NA NA NA NA NA NA NA NA NA LTS-036 IL10RA, IL18, ARCN1, MCAM, KMT2A, NCAM1, NNMT, FXYD2, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, NXPE4, TTC12, C11orf57, VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, USP28, PTS, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, CLDN25, RPL23AP64, TAGLN, UPK2, ZBTB16, RNF26, NLRX1, PDZD3, TMPRSS5, MFRP, BCO2, TMPRSS13, BUD13, TMEM25, DIXDC1, CBL, ZPR1, CD3D, PCSK7, CD3E, CD3G, HTR3B, ZW10, UBE4A, C2CD2L) 0.260421883948324 180 0.135614157065271 0.95753469064467 8605 0.317603087240111 3 2 1 -7.01141969419969 LTS-036 NA NA NA NA LTS-036 chr11 119217312 119371216 153905 * c(USP2-AS1, THY1, MFRP, USP2) NA 0 NA 0.958798458889759 229 0.200903921270488 3 NA NA -5.76499196849755 LTS-036 chr11 119371217 119508750 137534 * USP2-AS1 NA 0 NA 1.122 1 NA NA NA NA NA LTS-036 chr11 119508751 120008957 500207 * c(TRIM29, NECTIN1) 0.005 1 NA 1.06294235644797 293 0.370800605344993 3 3 0 -5.78094982939585 LTS-036 chr11 120008958 121483401 1474444 * c(TBCEL, TMEM136, OAF, ARHGEF12, POU2F3, GRIK4, SC5D, LOC649133, SORL1, TECTA) 0.120209760009641 34 0.163360345541823 0.99790722653064 1515 0.588005891504021 3 3 0 -6.73953766017879 LTS-036 chr11 121483402 121493001 9600 * SORL1 0.351 1 NA 0.985695807173701 29 0.176813189386105 3 3 0 -5.7644354342662 LTS-036 chr11 121493002 134244123 12751122 * c(LOC100128239, PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, OR8G2, OR8B8, OR8B2, ACAD8, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, C11orf44, MIR4697HG, DCPS, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, NA NA NA NA NA NA NA NA NA LTS-036 LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SORL1, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, C11orf63, CCDC15, PUS3, JAM3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.256624355965263 214 0.132997665180418 0.980806003156897 8677 0.405600877431185 3 2 1 -7.03248417421074 LTS-036 NA NA NA NA LTS-036 chr11 134244124 134856681 612558 * c(B3GAT1, LOC283177, GLB1L2) NA 0 NA 1.02263317070825 61 0.254449479671148 3 NA NA -5.77773739987816 LTS-036 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.403 1 NA 0.919590939705592 5 0.403985519542471 3 3 0 -5.76545297409799 LTS-036 chr12 176140 1909407 1733268 * c(LINC00942, MIR3649, FBXL14, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, ADIPOR2, WNT5B, CCDC77, CACNA2D4) 0.312850268858661 41 0.192676906358553 0.964174697983952 1937 0.389610848094141 3 2 1 -6.75921625295278 LTS-036 chr12 1909408 1945499 36092 * c(LRTM2, CACNA2D4) 0 1 NA 1.00526905725353 105 0.192604691573485 3 3 0 -5.76498494295567 LTS-036 chr12 1945500 3049631 1104132 * c(LINC00940, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, DCP1B, FKBP4, FOXM1, LOC283440, ITFG2, LRTM2, TULP3, CACNA1C, RHNO1, NRIP2, CACNA2D4) 0.0490681559729481 26 0.144185846952946 1.01121930502547 1204 0.223794636301799 3 3 0 -6.84108482874486 LTS-036 chr12 3049632 3315433 265802 * c(TSPAN9, TEAD4, TULP3) 0.498 1 NA 1.03301224434184 88 0.303397916250527 3 3 0 -5.77035479176677 LTS-036 chr12 3315434 3736745 421312 * c(TSPAN9, PRMT8, CRACR2A) 0.273567896698568 9 0.22938383649343 1.07382453108886 225 0.248048060419302 4 3 1 -6.81282631003857 LTS-036 chr12 3736746 3749874 13129 * CRACR2A 0 1 NA 0.975683946728346 25 0.170131155289089 3 3 0 -5.76441075492498 LTS-036 chr12 3749875 3806147 56273 * CRACR2A 0 9 0 1.06524597456755 73 0.276534201110028 0 0 0 -Inf LTS-036 chr12 3806148 3918300 112153 * c(PARP11, CRACR2A) 0.472 1 NA 0.80673570801242 17 0.235030285908258 2 2 0 -5.78156865649676 LTS-036 chr12 3918301 4881775 963475 * c(AKAP3, RAD51AP1, FGF6, GALNT8, NDUFA9, PARP11, C12orf4, TIGAR, FGF23, DYRK4, CCND2) 0.359024043720872 32 0.172684672069474 0.929303742174298 1074 0.236701356189211 3 2 1 -6.75674769886465 LTS-036 chr12 4881776 4918910 37135 * c(GALNT8, KCNA6) 0.007 1 NA 0.873457671117668 17 0.121954156044272 3 3 0 -5.7822110262309 LTS-036 chr12 4918911 6138595 1219685 * c(KCNA1, KCNA5, KCNA6, NTF3, ANO2, VWF) 0.13819825040991 19 0.214290915559265 1.0223891762023 579 0.24057019209566 3 3 0 -6.77650174053881 LTS-036 chr12 6138596 6153514 14919 * VWF 0.473 1 NA 1.06918957010622 21 0.171848161107969 3 3 0 -5.76703195360925 LTS-036 chr12 6153515 6887020 733506 * c(CHD4, ZNF384, PIANP, IFFO1, GAPDH, LAG3, LTBR, NOP2, COPS7A, ING4, MRPL51, TAPBPL, PLEKHG6, LPAR5, PTMS, SCNN1A, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, VWF, MLF2, ACRBP, CD9, CD27, NCAPD2) 0.392346032820896 55 0.162325289660298 0.950066705424553 1933 0.198155571741109 3 2 1 -6.7758062968591 LTS-036 chr12 6887021 6909442 22422 * c(LAG3, CD4) 0.004 1 NA 0.902632917165005 17 0.332542124708859 3 3 0 -5.76511850256817 LTS-036 chr12 6909443 7654076 744634 * c(LPCAT3, LRRC23, EMG1, P3H3, C12orf57, PHB2, DSTNP2, ATN1, ENO2, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, MIR141, MIR200C, C1RL, PTPN6, PEX5, SCARNA12, C1R, C1S, TPI1, USP5, CDCA3, RBP5, SPSB2, CD4, CD163, CLSTN3) 0.206692695292399 43 0.229205223173494 0.971468811779678 2067 0.236257224824417 3 3 0 -6.84838907293423 LTS-036 chr12 7654077 7655020 944 * CD163 NA 0 NA 0.866 1 NA NA NA NA NA LTS-036 chr12 7655021 8248367 593347 * c(SLC2A14, CLEC4C, NECAP1, APOBEC1, DPPA3, NANOGNB, FOXJ2, SLC2A3, C3AR1, NANOG, CD163, GDF3) 0.376582069425478 8 0.164126203618696 0.903425983507569 655 0.188985774297318 3 2 1 -6.80198498866894 LTS-036 chr12 8248368 8288403 40036 * c(NECAP1, CLEC4A, POU5F1P3) 0 1 NA 0.926983676371463 73 0.199399230872264 3 3 0 -5.76590164719502 LTS-036 chr12 8288404 9010671 722268 * c(A2ML1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, AICDA, RIMKLB, FAM86FP, MFAP5, CLEC6A) 0.0861078689508921 16 0.175779359804652 0.938706951441357 600 0.227189005122198 3 3 0 -6.7516831564 LTS-036 chr12 9010672 9010686 15 * A2ML1 0.485 1 NA 0.841 1 NA NA NA NA NA LTS-036 chr12 9010687 9747676 736990 * c(LINC00987, KLRG1, A2ML1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.400204820238035 42 0.0870602505404042 0.879373934777409 990 0.240117272000789 3 2 1 -6.98652592815785 LTS-036 chr12 9747677 9833524 85848 * c(CLEC2D, LOC374443, KLRB1) 0.006 1 NA 0.779509414063506 42 0.174752901707103 2 2 0 -5.77643501937804 LTS-036 chr12 9833525 10251445 417921 * c(KLRF2, CLEC12A, CLECL1, CLEC9A, CLEC2D, CLEC2A, CLEC12B, CLEC1B, CLEC1A, KLRF1, CD69, CLEC2B) 0.15882998456605 18 0.238201794223389 0.857633015007884 608 0.195892781338524 3 3 0 -6.86755188339965 LTS-036 chr12 10251446 10269422 17977 * c(CLEC1A, CLEC7A) 0 1 NA 0.890442657420999 10 0.184724690041995 3 3 0 -5.7669641771216 LTS-036 chr12 10269423 10579525 310103 * c(KLRC4-KLRK1, TMEM52B, KLRK1, GABARAPL1, KLRC2, KLRC3, KLRD1, OLR1, CLEC7A, KLRC4) 0.0222256187663821 19 0.106968050102309 0.876956548576325 454 0.225699713791563 3 3 0 -7.11440829939764 LTS-036 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 0.008 1 NA NA NA NA NA LTS-036 chr12 10583165 10588526 5362 * c(KLRC2, KLRC3) NA 0 NA 0.156049681077477 48 0.188555764039401 0 NA NA -5.77010478495572 LTS-036 chr12 10588527 10675250 86724 * c(KLRC1, KLRC2, KLRC3) 0.00313098136948148 5 0.00730068489937759 0.823372940018288 107 0.409847981374022 20 20 0 -9.94992079392999 LTS-036 chr12 10675251 10959031 283781 * c(KLRA1P, TAS2R8, TAS2R7, MAGOHB, STYK1, YBX3) 0.454 1 NA 0.869774010519299 251 0.183859143729834 3 3 0 -5.82848803283688 LTS-036 chr12 10959032 11149390 190359 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R9, TAS2R8, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2) 0.435262754520788 11 0.0788992453011492 0.894233500011095 269 0.187969889561868 2 1 1 -7.12380377924382 LTS-036 chr12 11149391 11149711 321 * c(PRH1-PRR4, TAS2R20, PRB4) 0 1 NA 0.934269335838283 6 0.189575314848743 3 3 0 -5.7644194978185 LTS-036 chr12 11149712 11214472 64761 * c(PRH1-PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, PRB4) 0.252645614886087 42 0.108638146182819 0.83810257671621 114 0.149966304759658 4 3 1 -7.04974405185094 LTS-036 chr12 11214473 11215070 598 * c(PRH1-PRR4, TAS2R46, PRB4) NA 0 NA 0.826219469692978 9 0.10178422165433 2 NA NA -5.76511427629505 LTS-036 chr12 11215071 11243802 28732 * c(PRH1-PRR4, PRB4) NA 0 NA 0.106 1 NA NA NA NA NA LTS-036 chr12 11243803 11244091 289 * c(PRH1-PRR4, TAS2R43, PRB4) 0.023 1 NA 0.0650318660508721 19 0.0575445416091383 0 0 0 -5.82988829603696 LTS-036 chr12 11244092 11244859 768 * c(PRH1-PRR4, TAS2R43, PRB4) 0.168489584076343 9 0.148814295161602 0.107166170851856 53 0.120410425366785 2 2 0 -6.86378117288055 LTS-036 chr12 11244860 11286088 41229 * c(PRH1-PRR4, TAS2R43, TAS2R30, PRB4) 0.202727314516954 5 0.144399792243618 0.634535617457884 20 0.328117742024992 1 1 0 -6.76676416573987 LTS-036 chr12 11286089 11286249 161 * c(PRH1-PRR4, TAS2R30, PRB4) 0.238 1 NA 0.930426526035207 4 0.0696706537934015 3 3 0 -5.76445195783816 LTS-036 chr12 11286250 13248445 1962196 * c(SMIM10L1, LOC100506314, PRH1-PRR4, CDKN1B, BORCS5, CREBL2, ETV6, TAS2R30, GPR19, LINC01252, TAS2R42, RPL13AP20, LRP6, LOH12CR2, HEBP1, DDX47, MANSC1, PRB1, PRB3, PRB4, GPRC5D, FAM234B, PRB2, MIR613, MIR614, BCL2L14, DUSP16, APOLD1, GSG1, GPRC5A, HTR7P1) 0.344787460034402 37 0.193833048654637 0.931143545568703 1508 0.226597687158213 3 2 1 -6.78052317530482 LTS-036 chr12 13248446 13294838 46393 * GSG1 0 1 NA 1.02571588130899 25 0.297542013840063 3 3 0 -5.76524446890698 LTS-036 chr12 13294839 14019157 724319 * c(EMP1, LINC01559, GRIN2B) 0.000138272109694229 9 0.00324465372232196 0.953610776310973 306 0.21419504818028 20 20 0 -20.3368994786335 LTS-036 chr12 14019158 14577892 558735 * c(GRIN2B, ATF7IP) 0.473 1 NA 0.955495032046375 41 0.155100809074646 3 3 0 -5.76965007007612 LTS-036 chr12 14577893 24964523 10386631 * c(MIR920, LOC100506393, ABCC9, MIR3974, SLCO1B1, STRAP, HIST4H4, ERP27, AEBP2, LINC00477, C12orf60, EPS8, SLCO1B3, GUCY2C, GYS2, IAPP, SLCO1B7, KCNJ8, LDHB, ARHGDIB, ART4, MGP, MGST1, SMCO3, GOLT1B, DERA, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, ETNK1, ATF7IP, H2AFJ, LMO3, CMAS, PTPRO, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, SKP1P2, SLC15A5, RERGL, PLBD1, PYROXD1, SPX, RERG, PLCZ1, CAPZA3, NA NA NA NA NA NA NA NA NA LTS-036 C2CD5) 0.295163338261671 92 0.208858175750052 0.938784567659249 4408 0.228245561000066 3 2 1 -6.93790810309431 LTS-036 NA NA NA NA LTS-036 chr12 24964524 24965708 1185 * BCAT1 0 1 NA 0.963678436904396 27 0.195176981560465 3 3 0 -5.76441233863897 LTS-036 chr12 24965709 25705804 740096 * c(ETFRF1, LMNTD1, C12orf77, KRAS, LRMP, CASC1, BCAT1) 0.0907642411053572 23 0.178676867346899 0.905191144361684 624 0.277820832417579 3 3 0 -6.76787408686045 LTS-036 chr12 25705805 25957785 251981 * LMNTD1 0.326 1 NA 0.834256620804268 25 0.061903634788274 2 2 0 -6.56401350206142 LTS-036 chr12 25957786 27788795 1831010 * c(MIR4302, RASSF8-AS1, RASSF8, STK38L, FGFR1OP2, SMCO2, ITPR2, TM7SF3, ASUN, ARNTL2, C12orf71, BHLHE41, SSPN, PPFIBP1, MED21) 0.394602084079559 34 0.135909047389092 0.936399238435111 1398 0.215915510000459 3 2 1 -6.82645015736319 LTS-036 chr12 27788796 27789143 348 * PPFIBP1 0.274 1 NA 0.953617863104886 7 0.164997402576958 3 3 0 -5.76441362581754 LTS-036 chr12 27789144 27863693 74550 * c(REP15, PPFIBP1) 0.218500773252123 13 0.148583655104128 1.05581934723506 241 2.6596658207652 1 1 0 -6.73759221397021 LTS-036 chr12 27863694 27867706 4013 * MRPS35 0.479 1 NA 1.09431187015097 7 0.196509057103762 3 3 0 -5.76525247428142 LTS-036 chr12 27867707 29608361 1740655 * c(MANSC4, OVCH1-AS1, OVCH1, ERGIC2, CCDC91, FAR2, PTHLH, KLHL42, MRPS35) 0.433203769064551 23 0.101946703893665 0.94743659014018 703 0.28706890733334 3 2 1 -7.09611841846687 LTS-036 chr12 29608362 29639186 30825 * c(OVCH1-AS1, OVCH1) 0 1 NA 0.949405361132679 62 0.212728379781006 3 3 0 -5.76468201480561 LTS-036 chr12 29639187 29657316 18130 * c(OVCH1-AS1, OVCH1, TMTC1) 0.12121394388296 10 0.218527801434966 1.01399944878928 130 0.205064733005749 3 3 0 -6.73664636757158 LTS-036 chr12 29657317 29657700 384 * TMTC1 0.448 1 NA 0.94922403694312 9 0.133139129401457 3 3 0 -5.76441888759684 LTS-036 chr12 29657701 31257349 1599649 * c(LINC00941, DDX11-AS1, IPO8, DDX11, TSPAN11, CAPRIN2, TMTC1) 0.295339528439695 33 0.206442953819737 0.989058488440174 785 0.252475204608087 3 2 1 -6.7823092194765 LTS-036 chr12 31257350 31359050 101701 * DDX11 0.283859012476414 8 0.135411542027575 1.37470267309622 145 0.39596400746877 4 3 1 -6.73897828943513 LTS-036 chr12 31359051 31359083 33 * character(0) 0.324 1 NA 0.866 1 NA NA NA NA NA LTS-036 chr12 31359084 34180172 2821089 * c(DNM1L, RNU6-78P, DENND5B-AS1, FGD4, DENND5B, AMN1, ETFBKMT, SYT10, H3F3C, YARS2, PKP2, KIAA1551, FAM60A, BICD1, FLJ13224, ALG10) 0.292478662326532 41 0.216358386062367 0.944641329275009 1461 0.222331233990539 3 2 1 -6.8113921163152 LTS-036 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 0.972393292753255 13 0.216742491663051 3 NA NA -5.76441024605578 LTS-036 chr12 38710341 38710459 119 * character(0) 0.423 1 NA 0.434111219172813 5 0.237712641649534 1 1 0 -5.76441386388797 LTS-036 chr12 38710460 40714955 2004496 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.461278852675343 22 0.0327991394671194 0.891304775105082 1035 0.206734404500207 2 1 1 -10.0507519697636 LTS-036 chr12 40714956 40715820 865 * LRRK2 NA 0 NA 0.973 1 NA NA NA NA NA LTS-036 chr12 40715821 40742254 26434 * LRRK2 0.44 1 NA 0.977225159112776 35 0.136449855350638 3 3 0 -5.76441825803024 LTS-036 chr12 40742255 40799969 57715 * LRRK2 0 1 NA 0.973072939779783 89 0.294999036545578 3 3 0 -5.76441067929436 LTS-036 chr12 40799970 40954482 154513 * character(0) 0.0639352116234481 19 0.172067884060757 1.00112635895415 585 0.284881352725212 3 3 0 -6.76826301863779 LTS-036 chr12 40954483 41303825 349343 * CNTN1 0.443 1 NA 0.920942387653647 59 0.208521132110221 3 3 0 -5.77961421581854 LTS-036 chr12 41303826 44404074 3100249 * c(YAF2, CNTN1, PRICKLE1, GXYLT1, PDZRN4, IRAK4, PPHLN1, TWF1, ADAMTS20, PUS7L, TMEM117, ZCRB1) 0.436025143953797 38 0.109825728368467 0.934172389524823 1395 0.21077954124751 3 2 1 -7.13339149125947 LTS-036 chr12 44404075 44926334 522260 * c(NELL2, TMEM117) 0 1 NA 0.985695260996877 103 0.211980719933331 3 3 0 -5.76536755333437 LTS-036 chr12 44926335 48142343 3216009 * c(PCED1B-AS1, MIR4698, RAPGEF3, ANO6, ARID2, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, SLC38A2, SLC38A4, RNY5, RPAP3, SLC38A1, RACGAP1P, ENDOU, PCED1B, SCAF11) 0.260472917752601 22 0.231601244305026 0.945092809208196 1688 0.219524400612361 3 2 1 -6.86318170137194 LTS-036 chr12 48142344 48172778 30435 * c(RAPGEF3, SLC48A1) 0.494 1 NA 1.02864716407432 75 0.221528870263811 3 3 0 -5.76550990404788 LTS-036 chr12 48172779 48438408 265630 * c(COL2A1, SENP1, HDAC7, SLC48A1, VDR, TMEM106C) 0.448994772235299 24 0.130058264535219 0.976278402512075 759 0.210613970704785 3 2 1 -7.04564884977492 LTS-036 chr12 48438409 48877056 438648 * c(C12orf54, ZNF641, OR10AD1, ASB8, ANP32D, SENP1, H1FNT, CCDC184, PFKM) 0.003 1 NA 0.957044066433697 581 0.211350188048766 3 3 0 -5.7662720815014 LTS-036 chr12 48877057 49230035 352979 * c(MIR4701, ADCY6, C12orf54, LINC00935, OR8S1, LALBA, KANSL2, SNORA2A, SNORA2B, SNORA2C, CACNB3, CCNT1, DDX23) 0.0835887816553175 11 0.172672733016168 0.95330197441771 775 0.277847782285307 3 3 0 -6.74374403110759 LTS-036 chr12 49230036 49255798 25763 * c(RND1, DDX23) 0.497 1 NA 0.977471462769104 73 0.313654854833185 3 3 0 -5.76441188752901 LTS-036 chr12 49255799 51089734 1833936 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, TUBA1B, MCRS1, LARP4, FAM186A, RHEBL1, BCDIN3D, FAIM2, DDN, KCNH3, PRPF40B, RND1, GPD1, LOC283332, RACGAP1, C1QL4, AQP2, AQP5, AQP6, ARF3, ASIC1, DHH, FKBP11, LIMA1, PRKAG1, LMBR1L, PRPH, DIP2B, NCKAP5L, SPATS2, SMARCD1, TMBIM6, WNT1, WNT10B, TUBA1A, DNAJC22, KMT2D, FAM186B, TUBA1C, COX14, CCDC65, FMNL3, CERS5) 0.44274081465873 54 0.0726557533204772 0.957460916439069 4165 0.696106069109266 4 2 2 -7.23309962248249 LTS-036 chr12 51089735 51203371 113637 * c(ATF1, DIP2B) 0.017 1 NA 0.980022624057566 213 0.223829161490473 3 3 0 -5.76445826066777 LTS-036 chr12 51203372 52201403 998032 * c(GALNT6, CELA1, METTL7A, LETMD1, TMPRSS12, ATF1, SLC11A2, BIN2, POU6F1, SMAGP, HIGD1C, SCN8A, TFCP2, CSRNP2, SLC4A8, DAZAP2) 0.195140565522509 16 0.234032253831247 0.968320851940121 1416 0.210127468164596 3 3 0 -6.82077442145001 LTS-036 chr12 52201404 52284274 82871 * c(ANKRD33, FIGNL2, SCN8A) 0.456 1 NA 1.04073863115472 103 0.253238929202559 3 3 0 -5.76779140906382 LTS-036 chr12 52284275 52771520 487246 * c(KRT80, GRASP, C12orf80, LINC00592, NR4A1, ANKRD33, KRT7, KRT81, KRT83, KRT85, KRT86, ATG101, ACVR1B, ACVRL1) 0.388429929633066 39 0.145781106128962 1.00396703417536 874 0.256024167745019 3 2 1 -6.77305436516779 LTS-036 chr12 52771521 52773702 2182 * KRT84 0.005 1 NA 0.832704948471849 16 0.271182103637636 2 2 0 -5.76481334459875 LTS-036 chr12 52773703 52790868 17166 * c(KRT82, KRT84) 0.113639117693712 9 0.154652387990329 0.946775868495676 96 0.374984757000143 3 3 0 -6.73485652248994 LTS-036 chr12 52790869 52817857 26989 * c(KRT82, KRT75) 0.497 1 NA 0.979370468191471 39 0.146620517828553 3 3 0 -5.76443114170556 LTS-036 chr12 52817858 52865548 47691 * c(KRT6C, KRT6B, KRT75) 0.430500251576627 18 0.10809988421511 0.954300411957175 162 0.226537589010569 4 2 2 -6.87450459851872 LTS-036 chr12 52865549 52866050 502 * KRT6C 0 1 NA 0.928189680689905 7 0.364482738503028 3 3 0 -5.76441543369313 LTS-036 chr12 52866051 52943144 77094 * c(KRT71, KRT6C, KRT5, KRT6A) 0.230447516945851 17 0.222803659279275 0.996510541439438 197 0.23015049418609 4 3 1 -6.81483601458838 LTS-036 chr12 52943145 52946498 3354 * KRT71 0.454 1 NA 1.04812881277089 11 0.181598908687149 3 3 0 -5.76473639107691 LTS-036 chr12 52946499 53070121 123623 * c(KRT71, KRT74, KRT72, KRT73, KRT1, KRT2) 0.377606866171978 16 0.158241574288596 1.0397213744526 324 0.260564836054626 3 2 1 -6.75257795314019 LTS-036 chr12 53070122 53070145 24 * KRT1 0 1 NA 1.288 1 NA NA NA NA NA LTS-036 chr12 53070146 53217701 147556 * c(KRT79, KRT77, KRT1, KRT3, KRT4, KRT76) 0.146524263739991 14 0.239401451426375 1.05339714138778 372 0.250727243887584 3 3 0 -6.75940356544495 LTS-036 chr12 53217702 53227803 10102 * KRT79 0.469 1 NA 1.03750286506461 23 0.183914000782416 3 3 0 -5.76511992498164 LTS-036 chr12 53227804 54070919 843116 * c(LOC100652999, ATF7, SP7, KRT78, EIF4B, TNS2, AMHR2, LOC283335, ZNF740, KRT79, IGFBP6, ITGB7, KRT8, KRT18, PCBP2, CSAD, ATP5G2, PFDN5, PRR13, RARG, C12orf10, SP1, TARBP2, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ESPL1) 0.447629594502146 41 0.0768119258398038 0.976579048264389 2214 0.65147890780864 4 2 2 -7.17332979751485 LTS-036 chr12 54070920 54109659 38740 * CALCOCO1 0 1 NA 0.956579580033052 69 0.192438578679965 3 3 0 -5.76461951652714 LTS-036 chr12 54109660 54651471 541812 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, HOXC13-AS, CBX5, SMUG1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, LOC400043, MIR196A2, FLJ12825, CALCOCO1, MIR615) 0.218664199318217 14 0.235368369223159 0.985015274197701 789 0.260059702839933 3 3 0 -6.8698001963328 LTS-036 chr12 54651472 54740379 88908 * c(COPZ1, CBX5, HNRNPA1, MIR148B, NFE2) 0.327 1 NA 0.959479959678985 144 0.189133898356116 3 3 0 -5.76475635566324 LTS-036 chr12 54740380 55794480 1054101 * c(DCD, MUCL1, GTSF1, OR10A7, COPZ1, OR6C74, OR6C3, ZNF385A, OR6C6, NCKAP1L, ITGA5, OR6C1, OR6C75, OR6C65, OR9K2, PDE1B, GPR84, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.434816499632736 20 0.106899559351167 0.956329633093966 1163 0.20183895467563 3 2 1 -7.07364881461498 LTS-036 chr12 55794481 55794486 6 * OR6C65 NA 0 NA 1.107 1 NA NA NA NA NA LTS-036 chr12 55794487 55968450 173964 * c(OR2AP1, OR6C2, OR6C4, OR6C76, OR6C70, OR6C65, OR6C68) 0.419243987509809 6 0.0489111439244678 1.12374712590541 230 0.410908781361 4 2 2 -7.02174193150595 LTS-036 chr12 55968451 56030938 62488 * c(OR2AP1, OR10P1) 0.005 1 NA 0.962617188358832 25 0.225736298956696 3 3 0 -5.76451560932042 LTS-036 chr12 56030939 56365699 334761 * c(BLOC1S1-RDH5, CDK2, GDF11, OR10P1, DGKA, METTL7B, BLOC1S1, ORMDL2, ITGA7, MMP19, RDH5, PMEL, PYM1, SARNP, DNAJC14, CD63) 0.272090470907679 26 0.206128249846098 1.15450758658003 1020 0.258008445497444 4 3 1 -6.75035450241032 LTS-036 chr12 56365700 56374695 8996 * c(CDK2, RAB5B) 0.444 1 NA 1.07687263724793 33 0.161018779490111 3 3 0 -5.76649882813935 LTS-036 chr12 56374696 57181608 806913 * c(RNF41, CNPY2, PTGES3, BAZ2A, MYL6B, CS, ERBB3, ESYT1, SNORD59A, GLS2, ANKRD52, SLC39A5, SPRYD4, APOF, MIP, MYL6, NACA, PA2G4, ATP5B, IL23A, PRIM1, RAB5B, RBMS2, RPL41, RPS26, IKZF4, SMARCC2, STAT2, SUOX, SNORD59B, NABP2, ZC3H10, HSD17B6, TIMELESS, COQ10A, PAN2) 0.393844833661903 32 0.085793450385401 1.13079791168006 3024 0.241022370665955 4 2 2 -6.8003900099902 LTS-036 chr12 57181609 57316959 135351 * SDR9C7 NA 0 NA 0.596 1 NA NA NA NA NA LTS-036 chr12 57316960 57589865 272906 * c(MIR1228, GPR182, SDR9C7, NEMP1, LRP1, MYO1A, NAB2, STAT6, TAC3, RDH16, ZBTB39) 0.374452847226213 33 0.130456410344605 0.817045797118707 1079 0.169829185651324 2 1 1 -6.83348620465506 LTS-036 chr12 57589866 57590915 1050 * LRP1 0 1 NA 0.824794284741184 9 0.139067429687904 2 2 0 -5.76505698529042 LTS-036 chr12 57590916 57640620 49705 * c(NXPH4, STAC3, LRP1, NDUFA4L2, SHMT2) 0.106589217916258 11 0.204469290870514 0.799492062907661 391 0.211272458765706 3 3 0 -6.75904398175965 LTS-036 chr12 57640621 57648644 8024 * c(R3HDM2, STAC3) 0.475 1 NA 0.789803814881819 45 0.165606802792981 2 2 0 -5.76608303030378 LTS-036 chr12 57648645 62103079 4454435 * c(AGAP2-AS1, LOC100506844, TSFM, CTDSP2, CDK4, DCTN2, AVIL, OS9, MBD6, ARHGEF25, AGAP2, LRIG3, CYP27B1, DDIT3, DTX3, R3HDM2, B4GALNT1, METTL21B, GLI1, FAM19A2, INHBC, KIF5A, MIR26A2, MARS, METTL1, TSPAN31, ARHGAP9, SLC26A10, PIP4K2C, INHBE, ATP23, SLC16A7, MARCH9) 0.338096623821164 39 0.123695268980471 0.785114496367952 2682 0.164099978827087 2 1 1 -7.5535480160661 LTS-036 chr12 62103080 65090056 2986977 * c(MIR548Z, TMEM5, XPOT, C12orf56, C12orf66, MON2, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, MIRLET7I, AVPR1A, PPM1H, SRGAP1, MIR548C, USP15) 0.334774631416933 21 0.211059504135005 0.960307825615697 1678 0.353037978481882 3 2 1 -6.74028517869391 LTS-036 chr12 65090057 65091314 1258 * RASSF3 0.429 1 NA 1.12504805029563 32 0.569068493772796 4 4 0 -5.76442937286554 LTS-036 chr12 65091315 65641985 550671 * c(WIF1, TBC1D30, LEMD3, GNS, RASSF3, FLJ41278) 0.472390793498596 10 0.0333859584589423 0.97223307323204 534 0.36443999208572 4 2 2 -9.46595097701296 LTS-036 chr12 65641986 65857555 215570 * c(LEMD3, MSRB3) 0 1 NA 1.11553860797294 53 0.275227098471328 4 4 0 -5.78122525581496 LTS-036 chr12 65857556 66358347 500792 * c(RPSAP52, MSRB3, HMGA2) 0.0292010509241005 11 0.130584351004524 0.987307752116982 447 0.24295332524006 3 3 0 -6.93080402556693 LTS-036 chr12 66358348 66502480 144133 * HMGA2 0.381 1 NA 1.03735930775192 57 0.273810129180981 3 3 0 -5.76895653086495 LTS-036 chr12 66502481 70215571 3713091 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, RAB3IP, CPM, BEST3, GRIP1, IFNG, LRRC10, LYZ, MDM2, IL22, TMBIM4, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, LLPH, DYRK2, HELB) 0.422748113109245 93 0.111559826569249 0.927664298954207 2718 0.286875124758259 3 2 1 -7.0254272279097 LTS-036 chr12 70215572 70274066 58495 * RAB3IP 0 1 NA 1.11606169296577 55 0.288573083017845 4 4 0 -5.76853023691044 LTS-036 chr12 70274067 70933687 659621 * c(KCNMB4, CNOT2, PTPRB) 0.23304128592852 15 0.234382532259918 0.982856670439516 483 0.259599806118877 3 2 1 -6.88572869912074 LTS-036 chr12 70933688 70952831 19144 * PTPRB 0.497 1 NA 1.0072421219696 37 0.163172802155762 3 3 0 -5.76488967244781 LTS-036 chr12 70952832 71833681 880850 * c(PTPRB, PTPRR, TSPAN8, LGR5) 0.407141728484861 12 0.0656226586883931 1.03463112035812 345 0.2091778050174 4 2 2 -7.14927080365355 LTS-036 chr12 71833682 72071045 237364 * c(ZFC3H1, TSPAN8, THAP2, LGR5) 0 1 NA 0.972712342513604 387 0.232306981035361 3 3 0 -5.76441639798255 LTS-036 chr12 72071046 75437335 3366290 * c(LOC100507377, TPH2, RAB21, TRHDE-AS1, TRHDE, KCNC2, TMEM19, ATXN7L3B, TBC1D15, MRS2P2, THAP2) 0.0713795940175698 16 0.155629420954608 0.979868932286955 861 0.235144000542807 3 3 0 -6.76253118381793 LTS-036 chr12 75437336 75437438 103 * KCNC2 NA 0 NA 0.818 1 NA NA NA NA NA LTS-036 chr12 75437439 76427479 990041 * c(GLIPR1, KRR1, GLIPR1L2, PHLDA1, GLIPR1L1, KCNC2, CAPS2) 0.00209459065289977 12 0.0045016831868926 0.87475550113683 578 0.215150352462604 20 20 0 -19.2983789609866 LTS-036 chr12 76427480 76439734 12255 * NAP1L1 0.486 1 NA 0.800014017209507 28 0.0889158912359636 2 2 0 -5.77574082555338 LTS-036 chr12 76439735 76745626 305892 * c(OSBPL8, NAP1L1, BBS10) 0.300314993090886 4 0.223595430782176 0.837293306077293 254 0.190119280883227 3 2 1 -6.87995261602164 LTS-036 chr12 76745627 80828843 4083217 * c(MIR1252, OSBPL8, E2F7, CSRP2, ZDHHC17, OTOGL, PPP1R12A, PAWR, SYT1, NAV3) 0.272855266762937 29 0.213155728358446 0.938218111283155 1754 0.247762645069986 3 2 1 -6.87192699591009 LTS-036 chr12 80828844 80840771 11928 * PTPRQ 0.485 1 NA 0.946012557697184 31 0.265755413463106 3 3 0 -5.76449755496981 LTS-036 chr12 80840772 94649103 13808332 * c(POC1B-GALNT4, MIR4699, MIR548AL, PLXNC1, KERA, NUDT4, TSPAN19, SOCS2-AS1, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, MGAT4C, POC1B, MRPL42, CCDC59, LINC00936, C12orf74, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, ATP2B1, NTS, SLC6A15, CLLU1OS, CLLU1, LOC643339, MIR617, MIR618, BTG1, LOC728084, UBE2N, ACSS3, CEP290, ALX1, EEA1, LRRIQ1, METTL25, PPFIA2, GALNT4, CRADD, NA NA NA NA NA NA NA NA NA LTS-036 LIN7A, SOCS2, C12orf29, RASSF9) 0.365774417635186 95 0.154682308533808 0.945340101084508 4285 0.24360648538066 3 2 1 -6.86113330657164 LTS-036 NA NA NA NA LTS-036 chr12 94649104 94769758 120655 * c(PLXNC1, CEP83) 0 1 NA 0.91343356849849 227 0.381249390573875 3 3 0 -5.76647619943353 LTS-036 chr12 94769759 95695543 925785 * c(MIR5700, CEP83-AS1, KRT19P2, CEP83, VEZT, FGD6, NDUFA12, TMCC3, NR2C1) 0.280043723320667 19 0.219567770512781 0.961886811007076 716 0.198018101317601 3 2 1 -6.80017112623922 LTS-036 chr12 95695544 95702385 6842 * c(MIR331, VEZT) 0.468 1 NA 1.03816457157176 29 0.259054333650783 3 3 0 -5.7646573758196 LTS-036 chr12 95702386 98897645 3195260 * c(PGAM1P5, MIR1251, MIR4303, MIR3685, METAP2, CCDC38, NEDD1, SLC9A7P1, AMDHD1, RMST, ELK3, HAL, LTA4H, MIR135A2, CDK17, NTN4, LOC643711, LOC643770, SNRPF, USP44) 0.446152563604691 47 0.0723661800484253 0.933430809445769 1580 0.259626988351023 3 2 1 -7.64940300319933 LTS-036 chr12 98897646 99007356 109711 * c(TMPO-AS1, IKBIP, SLC25A3, SNORA53, TMPO) 0 1 NA 0.913916301415426 231 0.228175586527613 3 3 0 -5.76956659096941 LTS-036 chr12 99007357 100043522 1036166 * c(IKBIP, FAM71C, APAF1, ANKS1B) 0.130262393537087 9 0.240970433871046 0.965896133964088 463 0.242265975481556 3 3 0 -6.74026809834075 LTS-036 chr12 100043523 100043645 123 * c(FAM71C, ANKS1B) 0.436 1 NA 1.04025500771376 3 0.256936438313707 3 3 0 -5.76441490514779 LTS-036 chr12 100043646 101017445 973800 * c(MIR1827, DEPDC4, FAM71C, UHRF1BP1L, SLC17A8, GAS2L3, GOLGA2P5, SCYL2, ANKS1B, ACTR6, NR1H4) 0.432404772913535 9 0.164804429552121 0.921980432912325 781 0.200674278707572 3 2 1 -6.91419796669737 LTS-036 chr12 101017446 101549838 532393 * c(ANO4, GAS2L3) 0 1 NA 0.979293706593532 175 0.186213508652293 3 3 0 -5.76465947250662 LTS-036 chr12 101549839 102455729 905891 * c(SPIC, SLC5A8, UTP20, ARL1, MYBPC1, SYCP3, CCDC53, DRAM1, CHPT1, GNPTAB) 0.207687231198643 26 0.224814070186557 0.9273015208371 1203 0.220509709149171 3 3 0 -6.88219700485245 LTS-036 chr12 102455730 102470632 14903 * c(CCDC53, NUP37) 0.405 1 NA 0.990625057553931 19 0.207472044195855 3 3 0 -5.76446811445036 LTS-036 chr12 102470633 104985443 2514811 * c(MIR3652, MIR3922, TTC41P, LINC00485, HCFC2, IGF1, C12orf42, ASCL1, NFYB, EID3, CHST11, PAH, NT5DC3, PMCH, PARPBP, STAB2, TDG, HSP90B1, C12orf73, TXNRD1, NUP37, GLT8D2) 0.305143302132558 67 0.200829703674241 0.941228396245157 1991 0.551481753571375 3 2 1 -6.77225318462222 LTS-036 chr12 104985444 104985540 97 * c(MIR3922, CHST11) 0.376 1 NA 0.736889261929555 3 0.0970068726087659 2 2 0 -5.76441503453659 LTS-036 chr12 104985541 105433523 447983 * c(C12orf45, ALDH1L2, CHST11, SLC41A2) 0.0337017537361818 9 0.137059293738148 0.941057319797772 398 0.265454921238144 3 3 0 -6.89678367066185 LTS-036 chr12 105433524 105550565 117042 * c(ALDH1L2, KIAA1033) 0.438 1 NA 0.930618801941657 199 0.195910345461151 3 3 0 -5.76824221067642 LTS-036 chr12 105550566 106723190 1172625 * c(CKAP4, KIAA1033, TCP11L2, C12orf75, APPL2, NUAK1) 0.465259687223621 26 0.0279745213748841 0.952000957814933 573 0.286623787892578 4 2 2 -10.182664334795 LTS-036 chr12 106723191 106723385 195 * TCP11L2 0.382 1 NA 0.807096928606334 5 0.0913690319528449 2 2 0 -5.76460856942926 LTS-036 chr12 106723386 107937768 1214383 * c(LOC100287944, LOC100505978, BTBD11, CRY1, TCP11L2, RIC8B, POLR3B, RFX4, MTERF2, TMEM263) 0.228917853718278 9 0.222068557982539 0.926830522892597 744 0.228280255114583 3 3 0 -6.94813425844281 LTS-036 chr12 107937769 108029186 91418 * BTBD11 0.406 1 NA 1.03051379185535 47 0.213419496745539 3 3 0 -5.76820903057926 LTS-036 chr12 108029187 108154632 125446 * c(PRDM4, PWP1, BTBD11) 0.411876656293575 17 0.115535454196842 0.953259773067696 307 0.661860887906747 4 2 2 -6.77706007866914 LTS-036 chr12 108154633 108170002 15370 * c(PRDM4, ASCL4) 0 1 NA 1.018667630174 40 0.189192237060886 3 3 0 -5.76492305263219 LTS-036 chr12 108170003 108913538 743536 * c(FICD, ASCL4, CMKLR1, LOC728739, WSCD2) 0 9 0 0.950619317728107 303 0.285651158045695 0 0 0 -Inf LTS-036 chr12 108913539 108914419 881 * character(0) 0.489 1 NA 0.99549884580717 19 0.19100068889377 3 3 0 -5.76441689662757 LTS-036 chr12 108914420 109221013 306594 * c(ISCU, CORO1C, TMEM119, SSH1, SELPLG, SART3) 0.442393390737897 26 0.0375875593166757 0.928584448265671 681 0.19002672049031 2 1 1 -8.212289496789 LTS-036 chr12 109221014 109246399 25386 * SSH1 0 1 NA 1.0544143282318 15 0.294346216619299 3 3 0 -5.76551018906634 LTS-036 chr12 109246400 109717697 471298 * c(USP30-AS1, ALKBH2, FOXN4, DAO, ACACB, SSH1, SVOP, UNG, USP30) 0.30736959534806 15 0.235224877207201 0.982764874280683 832 0.246183942260189 3 2 1 -6.75550677746941 LTS-036 chr12 109717698 109723233 5536 * FOXN4 0.481 1 NA 0.983130031619576 13 0.209524278013129 3 3 0 -5.76441641620296 LTS-036 chr12 109723234 113269641 3546408 * c(LINC01405, SH2B3, MIR4497, ARPC3, TRAFD1, ERP29, FOXN4, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, MYO1H, HECTD4, IFT81, FAM216A, MMAB, C12orf76, MVK, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, TRPV4, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, KCTD10, TCHP, HVCN1, FAM222A, FAM222A-AS1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, UBE3B, GIT2) 0.426504207425589 66 0.103687152728897 0.937951000400314 5053 0.560570524353732 3 2 1 -7.03292555824977 LTS-036 chr12 113269642 113335425 65784 * RPH3A 0.45223528453698 2 0.0106066017177983 1.04928365760929 116 0.173927753875613 4 2 2 -13.3850665732486 LTS-036 chr12 113335426 113356035 20610 * c(RPH3A, OAS1) 0 1 NA 0.972126084208727 80 0.244937138667729 3 3 0 -5.76441108160884 LTS-036 chr12 113356036 113424893 68858 * c(OAS1, OAS2, OAS3) 0.110244660910618 10 0.212053347585513 1.01698538910493 238 0.32473387446969 3 3 0 -6.7340864943852 LTS-036 chr12 113424894 113440921 16028 * OAS2 0.326 1 NA 0.971706952859195 57 0.249854101537553 3 3 0 -5.7644111557911 LTS-036 chr12 113440922 117486478 4045557 * c(LINC00173, MIR4472-2, SDS, SDSL, IQCD, DTX1, PLBD2, MED13L, TBX5-AS1, FBXW8, CFAP73, OAS2, TPCN1, TESC, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, RNFT2, RITA1, HRK, RBM19) 0.419458613234118 36 0.111876845555408 0.975801661017998 2203 0.219490751460459 3 2 1 -6.94002870920091 LTS-036 chr12 117486479 117593113 106635 * c(FBXO21, TESC) 0.005 1 NA 1.04488648668041 93 0.331344425884532 3 3 0 -5.76726710411077 LTS-036 chr12 117593114 118406142 813029 * c(FBXO21, KSR2, NOS1) 0.197409919733482 5 0.260519097188671 0.963391840229984 507 0.222157783370131 3 3 0 -6.80843139695865 LTS-036 chr12 118406143 118650861 244719 * c(PEBP1, TAOK3, VSIG10, WSB2, RFC5) 0.242865031742659 5 0.200240605272757 0.771957506866512 396 0.186228864421553 2 2 0 -6.90385593568804 LTS-036 chr12 118650862 118651727 866 * TAOK3 NA 0 NA 0.88 1 NA NA NA NA NA LTS-036 chr12 118651728 119554751 903024 * c(TAOK3, SUDS3, SRRM4) 0.149300514967262 6 0.252002910036108 1.01445857137618 230 0.270762139186238 3 3 0 -6.76339803321422 LTS-036 chr12 119554752 119563128 8377 * SRRM4 0.458 1 NA 1.00739224161818 13 0.157079311993688 3 3 0 -5.76463858872394 LTS-036 chr12 119563129 120565188 1002060 * c(MIR1178, GCN1, RAB35, CIT, LINC00934, CCDC60, HSPB8, TMEM233, PRKAB1, SRRM4, BICDL1) 0.391155872572328 14 0.123357182626285 0.975631146008698 948 0.232648221552917 3 2 1 -6.79104744735362 LTS-036 chr12 120565189 120576265 11077 * GCN1 0 1 NA 0.988276950037766 73 0.263933243889118 3 3 0 -5.76442973569799 LTS-036 chr12 120576266 120791197 214932 * c(PXN-AS1, MIR4498, GCN1, SIRT4, MSI1, PLA2G1B, PXN, RPLP0) 0.139780684419481 11 0.234624148179788 0.968404558474585 523 0.282134257285319 3 3 0 -6.74605939349993 LTS-036 chr12 120791198 120806706 15509 * MSI1 0.497 1 NA 0.953431317283691 37 0.258056029602903 3 3 0 -5.76447509310103 LTS-036 chr12 120806707 121458400 651694 * c(NRAV, MIR4700, SPPL3, COX6A1, GATC, HNF1A-AS1, ACADS, MSI1, POP5, TRIAP1, C12orf43, HNF1A, COQ5, UNC119B, OASL, DYNLL1, SRSF9, CABP1, MLEC, RNF10) 0.43707352848193 32 0.0919807132658974 0.93643480594542 1046 0.192471602422354 3 2 1 -7.21694420558729 LTS-036 chr12 121458401 121477046 18646 * OASL 0 1 NA 0.904073259550586 47 0.35314361466823 3 3 0 -5.7649108972343 LTS-036 chr12 121477047 122231209 754163 * c(CAMKK2, TMEM120B, MORN3, P2RX4, P2RX7, ANAPC5, RHOF, RNF34, KDM2B, ORAI1) 0.20828370020817 11 0.246915554206475 0.933137352994404 933 0.230021813641812 3 3 0 -6.85156389078728 LTS-036 chr12 122231210 122296784 65575 * c(SETD1B, HPD, LINC01089, RHOF) 0.408 1 NA 1.0068252838391 293 0.197106529598775 3 3 0 -5.76550798397012 LTS-036 chr12 122296785 123799974 1503190 * c(MIR4304, CLIP1-AS1, LOC100507091, MPHOSPH9, WDR66, MLXIP, ABCB9, LRRC43, HCAR1, HPD, HCAR2, IL31, ARL6IP4, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, BCL7A, CLIP1, VPS33A, RSRC2, B3GNT4, OGFOD2, VPS37B, CDK2AP1, CCDC62, DENR, HCAR3, HIP1R, C12orf65, KNTC1) 0.421273988704262 51 0.101107863195698 0.916458478388706 2951 0.249850325092782 3 2 1 -7.05113817666287 LTS-036 chr12 123799975 123801856 1882 * SBNO1 0 1 NA 1.12804432079647 9 0.312854598815488 4 4 0 -5.76449988988537 LTS-036 chr12 123801857 124070214 268358 * c(MIR3908, TMED2, SNRNP35, RILPL2, RILPL1, KMT5A, SBNO1) 0.312455152167353 17 0.144899077454133 0.955243048606576 373 0.230499895429641 3 2 1 -6.77994816723472 LTS-036 chr12 124070215 124082240 12026 * TMED2 0.488 1 NA 0.892374440169043 59 0.134964473538317 3 3 0 -5.76745805247225 LTS-036 chr12 124082241 124241506 159266 * c(TMED2, EIF2B1, ATP6V0A2, GTF2H3, DDX55, TCTN2) 0.137538896134243 9 0.201593512902684 0.914990577897959 496 0.236252253123086 3 3 0 -6.75511363337198 LTS-036 chr12 124241507 124242557 1051 * ATP6V0A2 0.463 1 NA 0.850888313489784 3 0.151502475227304 3 3 0 -5.76491290424152 LTS-036 chr12 124242558 124430812 188255 * c(DNAH10, ATP6V0A2, CCDC92) 0.478746300868773 16 0.0158775260457457 0.990483792761917 614 0.200133630114776 4 2 2 -13.1027514110865 LTS-036 chr12 124430813 124430998 186 * CCDC92 0.354 1 NA 0.943462360976465 7 0.212712414843543 3 3 0 -5.76441265814873 LTS-036 chr12 124430999 124496316 65318 * c(ZNF664-FAM101A, ZNF664, CCDC92) 0.421519526216708 2 0.0346482322781408 0.959376272321094 16 0.320712540031308 4 2 2 -7.36426501723955 LTS-036 chr12 124496317 124496382 66 * c(ZNF664-FAM101A, ZNF664) NA 0 NA 1.272 1 NA NA NA NA NA LTS-036 chr12 124496383 124499752 3370 * c(ZNF664-FAM101A, ZNF664) 0.313567316190827 3 0.0376342043005207 1.41545718747735 70 0.215203259882796 10 7 3 -6.75486009091503 LTS-036 chr12 124499753 125603152 1103400 * c(ZNF664-FAM101A, MIR5188, BRI3BP, RFLNA, ZNF664, DHX37, AACS, UBC, SCARB1, NCOR2) 0.354764664687712 26 0.183087536861049 0.994341463134117 927 0.313269319713336 3 2 1 -6.73593252278393 LTS-036 chr12 125603153 125811056 207904 * AACS 0.01 1 NA 0.930393538527287 114 0.178651295648937 3 3 0 -5.77267658931078 LTS-036 chr12 125811057 129192222 3381166 * c(LOC100128554, MIR3612, LINC00943, LINC00507, TMEM132B, LINC00944, LINC00939, FLJ37505, LOC440117, TMEM132C) 0.184679233595799 17 0.231620252086191 1.00480455163947 395 0.27204864296538 3 3 0 -6.82887246048559 LTS-036 chr12 129192223 129278207 85985 * c(SLC15A4, TMEM132C) 0.457 1 NA 0.896145733236636 17 0.196451629280744 3 3 0 -5.7737217719138 LTS-036 chr12 129278208 131306314 2028107 * c(LOC100190940, FZD10, TMEM132D, SLC15A4, GLT1D1, STX2, RIMBP2, FZD10-AS1, PIWIL1) 0.35963173449578 26 0.195138376937614 0.962148659787336 824 0.315153354472239 3 2 1 -6.73570615067559 LTS-036 chr12 131306315 131356862 50548 * c(STX2, RAN) 0 1 NA 1.08614613286975 13 0.17123035167088 3 3 0 -5.77662126755053 LTS-036 chr12 131356863 132322587 965725 * c(LINC01257, ADGRD1, MMP17, RAN, SFSWAP) 0.189424602815296 11 0.249565258363055 1.00755052523846 401 0.392652733820304 3 3 0 -6.80478132476489 LTS-036 chr12 132322588 132391106 68519 * c(MMP17, ULK1) 0.473 1 NA 0.98540252590109 86 0.229511945452378 3 3 0 -5.76451193855088 LTS-036 chr12 132391107 133503670 1112564 * c(LOC100130238, ZNF605, LRCOL1, PGAM5, P2RX2, ANKLE2, GOLGA3, DDX51, EP400NL, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, SNORA49, NOC4L, PUS1, ULK1) 0.419695150544622 49 0.144830266596623 0.989388835999397 2255 0.222616124262029 3 2 1 -6.86226216045829 LTS-036 chr12 133503671 133582153 78483 * ZNF605 0 1 NA 0.961371262471541 53 0.397104259834265 3 3 0 -5.76446270485779 LTS-036 chr12 133582154 133617701 35548 * character(0) 0 1 NA 0.969876366717955 85 0.168715814464502 3 3 0 -5.76442504139996 LTS-036 chr12 133617702 133617759 58 * character(0) NA 0 NA 0.841 1 NA NA NA NA NA LTS-036 chr12 133617760 133812039 194280 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.354565117170979 13 0.220511730021156 0.86251987601068 629 0.211855523070114 3 2 1 -6.77134230325956 LTS-036 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.795721685792262 11 0.101094285424323 2 NA NA -5.76484333781913 LTS-036 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.157 1 NA 1.16759855985671 3 0.386590653447976 4 4 0 -5.76822397618381 LTS-036 chr13 19600476 25525488 5925013 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, TPTE2P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.147190163973435 74 0.0935664337614826 0.805765394581983 3314 0.208907548599089 2 2 0 -7.6917305752003 LTS-036 chr13 25525489 25599975 74487 * TPTE2P1 0.486 1 NA 0.704063568103629 3 0.381685734603744 2 2 0 -5.76450168817306 LTS-036 chr13 25599976 25739431 139456 * PABPC3 0.31137609450991 23 0.0622391790998224 0.852289201336024 188 0.352398160191573 4 3 1 -6.89233647517991 LTS-036 chr13 25739432 25739544 113 * character(0) 0.078 1 NA 1.39379307292784 3 1.2000276385706 5 5 0 -5.76441034243128 LTS-036 chr13 25739545 58302111 32562567 * c(LINC00462, LINC00426, TPT1-AS1, PAN3-AS1, MIR1297, MIR548F5, MIR759, MIR320D1, MIR4305, MINOS1P1, MIR3613, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, MIR4703, TPTE2P5, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, LINC00297, DLEU7-AS1, MTUS2-AS1, LINC00332, LINC00366, LINC00398, LINC00423, LINC00457, LINC00571, STARD13-AS, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, FRY, LPAR6, NA NA NA NA NA NA NA NA NA LTS-036 SLC25A15, LHFP, TRIM13, USPL1, CDK8, MRPS31, DLEU1, N4BP2L2, CDX2, OLFM4, POSTN, HSPH1, WASF3, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, EXOSC8, ARL11, WDFY2, N4BP2L2-IT2, LINC00284, CSNK1A1L, RXFP2, TEX26, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, B3GLCT, DGKH, CCDC122, STOML3, EEF1DP3, ELF1, ESD, AMER2, USP12, MTIF3, GSX1, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, LNX2, FNDC3A, PDS5B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 VWA8, FOXO1, ZC3H13, SPG20, LRCH1, FLT1, FLT3, MTUS2, ALOX5AP, SLC25A30, PAN3, INTS6, CKAP2, NUFIP1, SNORD102, NBEA, PCDH17, GPR12, SUGT1P3, SIAH3, KCNRG, LINC00282, SLC46A3, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GTF3A, GUCY1B2, ALG5, HMGB1, HTR2A, FREM2, NEK5, PDX1, KPNA3, KCTD4, RASL11A, SHISA2, NHLRC3, SERP2, LCP1, SERTM1, LINC00547, LINC00548, MIR16-1, SMAD9, ATP5EP2, LINC00544, ALG11, NEK3, PCDH8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 VPS36, POLR1D, PHF11, POMP, UFM1, ATP8A2, ATP7B, UBL3, SOHLH2, ENOX1, RCBTB1, NUDT15, GPALPP1, SUPT20H, THSD1, CYSLTR2, SPRYD7, COG6, RB1, RFC3, RFXAP, RNF6, RPL21, SNORA27, TSC22D1-AS1, URAD, ZAR1L, LINC00598, LINC00371, SERPINE3, SLC7A1, BRCA2, SNORA31, MIR621, TPT1, TRPC4, CCDC169, PRR20B, PRR20D, PRR20E, NAA16, RNASEH2B, DHRS12, RUBCNL, PROSER1, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KATNAL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 KBTBD7, EBPL, MEDAG, TNFSF11, SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, MTMR6, DCLK1, KL, EPSTI1, ITM2B, MTRF1, UTP14C, NUP58) 0.152895689279908 339 0.0730350290145883 0.800231142584238 15349 0.305008851215351 2 2 0 -8.60499495221199 LTS-036 NA NA NA NA LTS-036 chr13 58302112 58303126 1015 * PCDH17 NA 0 NA 0.722971664840411 22 0.128879117159557 2 NA NA -5.76441325230443 LTS-036 chr13 58303127 60240961 1937835 * DIAPH3 0.263 1 NA 1.04027286717245 33 0.267209542108697 3 3 0 -5.83370011082479 LTS-036 chr13 60240962 67802709 7561748 * c(MIR3169, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, OR7E156P, PCDH9, PCDH20, TDRD3, DIAPH3) 0.303562473909913 6 0.0593613229861554 1.00594402155885 479 0.285480959439498 3 2 1 -7.17377186960005 LTS-036 chr13 70274717 101795422 31520706 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR548AN, MIR4500, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, PIBF1, SOX21, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, DACH1, GPR180, DCT, NA NA NA NA NA NA NA NA NA LTS-036 COMMD6, CLYBL, GPR183, EDNRB, GPC5, DZIP1, DIS3, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, OXGR1, GPR18, UBAC2, LINC00347, IPO5, LMO7, MIR19B1, MIR17HG, MZT1, PCCA, POU4F1, NDFIP2, UGGT2, DNAJC3, KLHL1, RAP2A, ATXN8OS, RBM26, MIR4500HG, CTAGE11P, SLC15A1, KLF5, BTF3P11, MIR622, MIR623, LMO7DN, ACOD1, UCHL3, ZIC2, RNF219, BORA, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, TM9SF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 TBC1D4) 0.194315446516218 103 0.0994381608806695 1.31302176329307 6891 0.607319647380304 4 3 1 -7.44459608750855 LTS-036 NA NA NA NA LTS-036 chr13 101795423 101881777 86355 * NALCN 0 1 NA 1.37944512650029 29 0.313027194714041 5 5 0 -5.76754974391074 LTS-036 chr13 101881778 103339365 1457588 * c(MIR2681, MIR4705, METTL21C, FGF14, NALCN, FGF14-IT1, FGF14-AS2, TPP2, ITGBL1) 0.0226915352053664 14 0.0817507603217659 1.30119732746589 372 0.292478387517085 4 4 0 -7.07915211307674 LTS-036 chr13 103339366 103385534 46169 * c(METTL21C, CCDC168) 0.246 1 NA 1.32548512707891 91 0.395600417535283 4 4 0 -5.76535491764466 LTS-036 chr13 103385535 103385576 42 * CCDC168 NA 0 NA 1.096 1 NA NA NA NA NA LTS-036 chr13 103385577 103697728 312152 * c(BIVM-ERCC5, METTL21EP, ERCC5, BIVM, CCDC168, SLC10A2, KDELC1, TEX30) 0.235150332191371 23 0.0579927418110818 1.19851525330428 779 0.261744271097295 5 4 1 -6.86872654498272 LTS-036 chr13 103697729 103697755 27 * SLC10A2 NA 0 NA 1.556 1 NA NA NA NA NA LTS-036 chr13 103697756 114773106 11075351 * c(LINC00552, MCF2L-AS1, GAS6-AS2, MIR548AS, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SLC10A2, SOX1, TFDP1, LINC00460, FAM155A, NA NA NA NA NA NA NA NA NA LTS-036 CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.175643022610423 118 0.0980009138988923 1.35644404454266 4337 0.357668901285493 5 4 1 -7.4240020646657 LTS-036 NA NA NA NA LTS-036 chr13 114773107 114774832 1726 * RASA3 NA 0 NA 1.134 1 NA NA NA NA NA LTS-036 chr13 114774833 115091073 316241 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.239440466696866 3 0.152709964747993 1.16158063762381 269 0.246438025102439 4 3 1 -6.80923278018472 LTS-036 chr13 115091074 115092817 1744 * CHAMP1 NA 0 NA 1.0616390640988 35 0.129104400461361 3 NA NA -5.76487350345508 LTS-036 chr14 19434116 20201972 767857 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.375 1 NA 1.16120173898723 12 0.348151699781297 4 4 0 -5.77772759027325 LTS-036 chr14 20201973 20404649 202677 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.207637861062018 9 0.141353084311749 1.11206384401602 193 0.232135568403198 4 3 1 -6.95429836740372 LTS-036 chr14 20404650 20404735 86 * OR4K1 0.25 1 NA 0.876 1 NA NA NA NA NA LTS-036 chr14 20404736 21467913 1063178 * c(SNORD126, PARP2, EDDM3A, RNASE11, OR4K14, OR4L1, OR11H6, KLHL33, ANG, SLC39A2, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, PNP, RNASE12, OSGEP, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, TEP1, OR4K1, OR4K15, RPPH1, TMEM55B, TTC5) 0.343428739332159 88 0.101443823859139 0.824905706648968 1618 0.440307156252897 3 2 1 -6.82765785941763 LTS-036 chr14 21467914 21469328 1415 * SLC39A2 0 1 NA 0.835619666282367 15 0.179386600338354 3 3 0 -5.76503091810301 LTS-036 chr14 21469329 21571623 102295 * c(TPPP2, RNASE8, SLC39A2, RNASE13, ZNF219, ARHGEF40, NDRG2, TMEM253, RNASE7) 0.000128234448526656 11 0.00246797672009059 0.85599211783929 507 0.208439864398395 20 20 0 -17.6571168575927 LTS-036 chr14 21571624 21623290 51667 * c(OR5AU1, ZNF219, TMEM253) 0.438 1 NA 0.876515637076127 15 0.156207218905194 3 3 0 -5.77856379719442 LTS-036 chr14 21623291 22555128 931838 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, METTL3, RPGRIP1, CHD8, SALL2, SNORD9, RAB2B, TOX4) 0.304929140676067 40 0.14481793167054 0.82328729319817 1515 0.173449653817137 2 1 1 -7.25015838324758 LTS-036 chr14 22555129 22991095 435967 * character(0) 0.196290258409801 13 0.17139080398991 1.18259968554315 536 0.278019529489162 4 3 1 -6.91336792003662 LTS-036 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.992 1 NA NA NA NA NA LTS-036 chr14 22992444 23652708 660265 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.27609874178998 42 0.102496151594847 0.978175439398069 1772 0.220794064194728 3 2 1 -7.05021603108884 LTS-036 chr14 23652709 23652881 173 * SLC7A8 NA 0 NA 0.968356606369861 5 0.0505746972309275 3 NA NA -5.76441160101001 LTS-036 chr14 23652882 23709507 56626 * character(0) NA 0 NA 2.512 1 NA NA NA NA NA LTS-036 chr14 23709508 23729750 20243 * character(0) 0.1 1 NA 2.79132877098507 23 0.630128696309765 10 10 0 -5.76441069853355 LTS-036 chr14 23729751 24033027 303277 * c(MIR208B, BCL2L2-PABPN1, EFS, CMTM5, NGDN, MIR208A, MYH6, MYH7, SLC22A17, HOMEZ, BCL2L2, IL25, THTPA, PABPN1, ZFHX2, AP1G2, PPP1R3E) 0.0836626315136272 27 0.0424276155835155 3.0295700669034 1357 0.81647914301366 16 15 1 -6.7680863682868 LTS-036 chr14 24033028 24033070 43 * AP1G2 0.127 1 NA 2.31294313731267 3 1.46534853646951 8 8 0 -5.76441014010662 LTS-036 chr14 24033071 24572939 539869 * c(DHRS2, DHRS4, DHRS4L2, NRL, PCK2, DHRS4-AS1, DHRS4L1, JPH4, AP1G2, CARMIL3, CPNE6) 0.094137136876895 9 0.0420238027789014 2.83397747664355 801 0.734519306666896 14 13 1 -6.78675508774982 LTS-036 chr14 24572940 25444088 871149 * c(NEDD8-MDP1, IRF9, TM9SF1, RIPK3, DHRS1, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, IPO4, DCAF11, REC8) 0.0983737346447477 58 0.0435071250883614 2.53740700538498 2575 0.606683349200136 12 11 1 -6.87876399846944 LTS-036 chr14 26915075 29236377 2321303 * c(MIR4307, LINC00645, FOXG1, NOVA1) 0.075 1 NA 3.63556051848402 152 1.00538365658291 13 13 0 -5.76513696708198 LTS-036 chr14 29236378 29236461 84 * FOXG1 NA 0 NA 1.699 1 NA NA NA NA NA LTS-036 chr14 29236462 29282552 46091 * c(FOXG1, LINC01551) 0.243 1 NA 1.60730795596594 94 0.403728150029272 5 5 0 -5.76538488060954 LTS-036 chr14 30045637 30125660 80024 * c(MIR548AI, PRKD1) 0.18772115297712 3 0.252319902768952 0.849864278720402 99 0.176062111891989 2 2 0 -6.79720968903204 LTS-036 chr14 30125661 30194896 69236 * c(MIR548AI, PRKD1) NA 0 NA 0.911684985648947 21 0.179936073304356 3 NA NA -5.77005054190908 LTS-036 chr14 30194897 30396421 201525 * PRKD1 NA 0 NA 0.545 1 NA NA NA NA NA LTS-036 chr14 30396422 30396442 21 * PRKD1 0.491 1 NA 0.431 1 NA NA NA NA NA LTS-036 chr14 30396443 33202525 2806083 * c(LOC100506071, AP4S1, DTD2, COCH, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, ARHGAP5, G2E3, PRKD1, MIR624, NUBPL, ARHGAP5-AS1, AKAP6) 0.36138803347573 32 0.154971404099949 0.657228540415011 1726 0.154148075299406 2 1 1 -7.23087171071072 LTS-036 chr14 33202526 33203029 504 * AKAP6 0.432 1 NA 0.796296327637496 11 0.113705760628035 2 2 0 -5.76467154891111 LTS-036 chr14 33203030 33292743 89714 * AKAP6 0.331 1 NA 0.820205477249115 77 0.121324712731347 2 2 0 -5.83072405637364 LTS-036 chr14 33292744 37049688 3756945 * c(PTCSC3, LINC00609, CFL2, BAZ1A, EGLN3, SPTSSA, RALGAPA1, SFTA3, NKX2-8, IGBP1P1, FAM177A1, NFKBIA, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NKX2-1, BRMS1L, INSM2, AKAP6, KIAA0391) 0.271192745681413 39 0.174785714187232 0.796651793188944 1885 0.215200422632087 2 1 1 -7.48120872443114 LTS-036 chr14 37049689 38296573 1246885 * c(SLC25A21-AS1, MIR4503, MIPOL1, NKX2-8, FOXA1, PAX9, SLC25A21) 0.379547763572866 9 0.155091191812359 0.681135574421936 660 0.210711392053803 2 1 1 -6.77619226779517 LTS-036 chr14 38296574 38306512 9939 * character(0) NA 0 NA 1.048 1 NA NA NA NA NA LTS-036 chr14 38306513 39901700 1595188 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, FBXO33, LINC00639, MIA2, PNN, SSTR1, GEMIN2) 0.233089192437109 19 0.071186683162296 1.18096859444962 886 0.327814123315685 4 3 1 -7.11133147633487 LTS-036 chr14 42355769 45587350 3231582 * c(SNORD127, C14orf28, LRFN5, FKBP3, FAM179B, KLHL28, PRPF39, FSCB) 0.47267604568369 5 0.0126372465355393 0.780872202840674 562 0.170077082427876 2 1 1 -14.296164194283 LTS-036 chr14 45587351 45589981 2631 * FKBP3 NA 0 NA 1.545 1 NA NA NA NA NA LTS-036 chr14 45589982 50079255 4489274 * c(MIR548Y, LINC00871, LINC00648, LRR1, RPL10L, MDGA2, FKBP3, MIS18BP1, FANCM, RPS29, NEMF) 0.306261943939427 12 0.246634928343063 0.949069379077674 607 0.249765308024335 3 2 1 -6.78352682858694 LTS-036 chr14 50079256 50910420 831165 * c(NA, MAP4K5, LRR1, KLHDC1, LINC01599, KLHDC2, ATP5S, LINC01588, ARF6, MGAT2, POLE2, DNAAF2, RPL36AL, SOS2, VCPKMT, L2HGDH, CDKL1, NEMF) 0.255916301318102 15 0.204559619903925 0.803801309302614 1271 0.195103225911401 2 2 0 -7.08124475948564 LTS-036 chr14 50910421 51054598 144178 * c(MAP4K5, ATL1) 0 1 NA 0.798207810891108 95 0.162748906966913 2 2 0 -5.80242116557542 LTS-036 chr14 51054599 51489582 434984 * c(TRIM9, ABHD12B, ATL1, NIN, PYGL, SAV1) 0.0170039995345417 13 0.103919717533814 0.784549496269495 780 0.180434371291173 3 3 0 -7.49123327246512 LTS-036 chr14 51489583 51562465 72883 * TRIM9 0.429 1 NA 0.746706515467716 45 0.113218377528125 2 2 0 -5.77028764153919 LTS-036 chr14 51562466 53019944 1457479 * c(FRMD6-AS2, FRMD6, FRMD6-AS1, NID2, LINC00640, GPR137C, C14orf166, GNG2, PTGDR, PTGER2, TXNDC16, TMX1) 0.397235716645632 20 0.0598801434446125 0.754993483125957 831 0.176703117562182 2 1 1 -6.83514116310509 LTS-036 chr14 53019945 53106642 86698 * GPR137C 0 1 NA 0.821211336731602 99 0.268372204362172 2 2 0 -5.77786371064245 LTS-036 chr14 53106643 55448409 2341767 * c(MIR4308, MIR5580, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, SAMD4A, GCH1, GMFB, ERO1A, PSMC6, GNPNAT1, BMP4, STYX, DDHD1) 0.227402253776021 14 0.176063440738943 0.796085770270589 1433 0.339172105664849 2 2 0 -7.00270314851492 LTS-036 chr14 55448410 55835961 387552 * c(WDHD1, SOCS4, ATG14, LGALS3, FBXO34, MAPK1IP1L, DLGAP5) 0.397 1 NA 0.745848437197734 545 0.168864323270199 2 2 0 -5.7776760218939 LTS-036 chr14 55835962 63179070 7343109 * c(KTN1-AS1, OTX2-AS1, HIF1A-AS2, EXOC5, L3HYPDH, NAA30, SLC38A6, C14orf37, TMEM30B, ATG14, DAAM1, TIMM9, KCNH5, HIF1A, C14orf39, SLC35F4, LRRC9, PSMA3-AS1, TBPL2, TOMM20L, KTN1, FLJ22447, MNAT1, SIX6, OTX2, DACT1, JKAMP, DHRS7, SIX4, TMEM260, PPM1A, C14orf105, AP5M1, PRKCH, ACTR10, PSMA3, PELI2, TRMT5, ARID4A, RTN1, PCNX4, RPL13AP3, LINC00520, GPR135, LINC00643, SIX1, SNAPC1, CCDC175, SYT16, KIAA0586 NA NA NA NA NA NA NA NA NA LTS-036 ) 0.344536838620718 75 0.133497983923772 0.804216386179442 4609 0.226119995150298 2 1 1 -7.76352399529931 LTS-036 NA NA NA NA LTS-036 chr14 63179071 63453773 274703 * KCNH5 0 1 NA 0.888734643615234 57 0.254027777081212 3 3 0 -5.78587202680829 LTS-036 chr14 63453774 65197791 1744018 * c(WDR89, GPHB5, PPP1R36, ESR2, ZBTB1, SYNE2, PLEKHG3, KCNH5, HSPA2, TEX21P, MTHFD1, PPP2R5E, RHOJ, ZBTB25, SGPP1, AKAP5) 0.207417445344504 38 0.198165060443698 0.799792309542692 1866 0.213524724615017 2 2 0 -7.06341375589565 LTS-036 chr14 65197792 65216120 18329 * c(PLEKHG3, SPTB) 0.418 1 NA 0.840394185135724 171 0.16753290144033 3 3 0 -5.77295193170898 LTS-036 chr14 65216121 65419293 203173 * c(CHURC1-FNTB, GPX2, RAB15, SPTB, CHURC1) 0 9 0 0.833697330576195 431 0.206280422173721 0 0 0 -Inf LTS-036 chr14 65419294 65569156 149863 * c(LOC100506321, CHURC1-FNTB, MIR4706, FNTB, RAB15, MAX) NA 0 NA 0.78463851614457 202 0.168615417392112 2 NA NA -5.79053121832896 LTS-036 chr14 65569157 65801811 232655 * MAX 0.395 1 NA 1.01668567750256 9 0.16469972677573 3 3 0 -5.77376702395007 LTS-036 chr14 65801812 70522484 4720673 * c(LOC100289511, MIR4708, GPHN, VTI1B, RDH12, FAM71D, TMEM229B, ACTN1-AS1, EIF2S1, ERH, ZFYVE26, FUT8, PLEK2, ARG2, PLEKHD1, LINC00238, RDH11, ATP6V1D, PIGH, EXD2, SLC39A9, CCDC177, GALNT16, PLEKHH1, RAD51B, SMOC1, SRSF5, MPP5, FUT8-AS1, SLC8A3, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.285269670036022 48 0.0943310128339005 0.992387752202148 3130 0.246216706701448 3 2 1 -7.04019113628982 LTS-036 chr14 70522485 70839389 316905 * c(SYNJ2BP-COX16, ADAM21P1, COX16, SYNJ2BP, SLC8A3) 0 1 NA 1.00387827988545 163 0.292275263898858 3 3 0 -5.76641233704273 LTS-036 chr14 70839390 72201985 1362596 * c(MED6, SYNJ2BP-COX16, LOC145474, PCNX1, TTC9, SIPA1L1, ADAM20P1, SNORD56B, MAP3K9, SYNJ2BP, ADAM21, ADAM20) 0.0499504340297548 12 0.133349052103754 0.986704546854207 962 0.247873151548989 3 3 0 -6.83662151749701 LTS-036 chr14 72201986 73029178 827193 * c(SIPA1L1, RGS6) 0.256 1 NA 0.963884313448917 195 0.244391446164751 3 3 0 -5.7653538559098 LTS-036 chr14 73029179 73989983 960805 * c(DCAF4, HEATR4, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, PAPLN, RGS6) 0.286380338637424 26 0.0987659860478292 0.972336044143463 1150 0.201564718938704 3 2 1 -6.99149452911711 LTS-036 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.074 1 NA NA NA NA NA LTS-036 chr14 74003792 74010468 6677 * c(HEATR4, ACOT1) NA 0 NA 0.166265141274278 40 0.246885310235859 0 NA NA -5.76672194151033 LTS-036 chr14 74010469 74060544 50076 * c(ACOT2, ACOT4, HEATR4, ACOT1) 0.355279577669614 3 0.1060251542481 0.675795486535986 68 0.419242609822919 3 2 1 -6.75618659805816 LTS-036 chr14 74060545 74060550 6 * ACOT4 NA 0 NA 1.088 1 NA NA NA NA NA LTS-036 chr14 74060551 74206481 145931 * c(ACOT4, ACOT6, DNAL1, ELMSAN1, PNMA1) 0.314888513784514 14 0.034934554196713 0.964896047254266 340 0.207471004457102 4 3 1 -7.13950602421308 LTS-036 chr14 74206482 74206855 374 * ELMSAN1 0 1 NA 0.954883617775542 9 0.27748803778021 3 3 0 -5.76441130185221 LTS-036 chr14 74206856 74759477 552622 * c(MIR4505, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, ZNF410, ABCD4, BBOF1, ELMSAN1, LIN52, ENTPD5) 0.0227312676069143 17 0.0921377245981126 0.991846261540589 1001 1.56138760970627 7 7 0 -6.85985764589717 LTS-036 chr14 74759478 74872707 113230 * c(VRTN, ABCD4, SYNDIG1L) 0.228 1 NA 0.997129385372043 119 0.13710621565477 3 3 0 -5.76636338318585 LTS-036 chr14 74872708 81993271 7120564 * c(MIR1260A, MIR4709, DIO2-AS1, BATF, NPC2, AHSA1, TMED10, C14orf1, IFT43, NOXRED1, JDP2, ISCA2, LRRC74A, ISM2, CEP128, SAMD15, DIO2, DLST, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, PROX2, ZDHHC22, TMED8, C14orf178, GSTZ1, GTF2A1, POMT2, LTBP2, FCF1, PGF, FLVCR2, GPATCH2L, YLPM1, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SYNDIG1L, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, SLIRP, RPS6KL1, NA NA NA NA NA NA NA NA NA LTS-036 STON2, CIPC, ALKBH1, EIF2B2, NEK9, NRXN3, SPTLC2, ACYP1, AREL1) 0.295778800458767 138 0.0830810712667758 0.992507027469696 6130 0.234381835678888 3 2 1 -7.02828581489234 LTS-036 NA NA NA NA LTS-036 chr14 81993272 91165606 9172335 * c(LINC00911, PTPN21, FOXN3, TTC8, TTC7B, EML5, FLRT2, GALC, LOC283585, LINC01146, FOXN3-AS2, FOXN3-AS1, LINC00642, KCNK10, NRDE2, TDP1, SPATA7, KCNK13, PSMC1, SEL1L, ZC3H14, CALM1, GPR65, EFCAB11) 0.267888646160182 63 0.185419979690452 1.14767484495841 2373 0.268089201644506 4 3 1 -7.10451907855036 LTS-036 chr14 91165607 91662832 497226 * c(SNORA11B, TTC7B, C14orf159, RPS6KA5) 0 1 NA 1.08433629272043 209 0.260348876766195 3 3 0 -5.81447092420132 LTS-036 chr14 91662833 92336145 673313 * c(FBLN5, TC2N, CCDC88C, PPP4R3A, CATSPERB, C14orf159, GPR68) 6.64135297301008e-05 11 0.00221153998175685 1.10961731299313 779 0.272157978184326 20 20 0 -20.562477268498 LTS-036 chr14 92336146 92527977 191832 * c(FBLN5, ATXN3, TRIP11) 0.362 1 NA 1.11219577163279 365 0.279302135157606 4 4 0 -5.77983458993434 LTS-036 chr14 92527978 93182466 654489 * c(SLC24A4, ATXN3, NDUFB1, CPSF2, LGMN, RIN3) 0.173879852543456 19 0.20366280468386 1.17197876898165 670 0.44687281869173 4 4 0 -6.8535883756202 LTS-036 chr14 93182467 93398031 215565 * c(CHGA, LGMN, GOLGA5) 0.412 1 NA 1.24869407792425 152 0.275015038404997 4 4 0 -5.76471649174818 LTS-036 chr14 93398032 96556440 3158409 * c(MIR3173, TUNAR, CHGA, SERPINA3, IFI27L1, GSC, SERPINA12, PRIMA1, SYNE3, DICER1, LINC00521, SERPINA11, TMEM251, TCL6, FAM181A-AS1, SNHG10, ITPK1-AS1, SERPINA9, COX8C, IFI27, ITPK1, SERPINA13P, DICER1-AS1, SERPINA5, SERPINA10, GLRX5, ASB2, SERPINA1, SERPINA4, UBR7, BTBD7, C14orf132, DDX24, UNC79, PPP4R4, MOAP1, OTUB2, LINC00341, CLMN, TCL1A, IFI27L2, GON7, SERPINA6, FAM181A, TCL1B) 0.313277512966088 97 0.166598820812813 1.16276623121142 3108 0.252001306569273 4 3 1 -6.84304310362005 LTS-036 chr14 96556441 96556846 406 * C14orf132 0 1 NA 1.71375517753295 5 0.25023748719966 6 6 0 -5.76441164069181 LTS-036 chr14 96556847 96671222 114376 * c(C14orf132, BDKRB2) 0.0455803427101216 9 0.107884197174563 1.1662705041009 84 0.374599806349136 5 5 0 -6.79143865869938 LTS-036 chr14 96671223 96705152 33930 * BDKRB2 0.345 1 NA 1.29804395930128 27 0.318328518332941 4 4 0 -5.764956345501 LTS-036 chr14 96705153 96750033 44881 * c(ATG2B, BDKRB1, BDKRB2) 0.358995567278148 13 0.121808593019267 1.22475862571514 258 0.756065684748574 3 2 1 -6.73714036140671 LTS-036 chr14 96750034 96777468 27435 * ATG2B 0 1 NA 1.14380004366435 129 0.238614832217257 4 4 0 -5.7660081312384 LTS-036 chr14 96777469 99977316 3199848 * c(LOC100129345, PAPOLA, AK7, C14orf177, LINC01550, GSKIP, ATG2B, BCL11B, VRK1, SETD3, CCNK) 0.138486445908364 13 0.209445880654352 1.16405417833413 1111 0.464381227595674 4 4 0 -6.80254473824832 LTS-036 chr14 99977317 99980087 2771 * c(CCDC85C, CCNK) 0.419 1 NA 1.20409095559993 59 0.337056040445703 4 4 0 -5.76441786579334 LTS-036 chr14 99980088 104940967 4960880 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MEG9, MIR203B, MIR2392, MIR5698, CYP46A1, CKB, TRMT61A, TDRD9, ANKRD9, SLC25A29, DEGS2, LINC00239, LINC00637, DIO3, DYNC1H1, EIF5, EML1, RCOR1, PPP1R13B, KIF26A, SLC25A47, LINC00523, CCDC85C, HSP90AA1, ASPG, KLC1, RTL1, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MIR323A, MIR337, MIR345, NA NA NA NA NA NA NA NA NA LTS-036 MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, EVL, CINP, PPP2R5C, MEG3, ZNF839, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MOK, MIR487A, RD3L, MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 MIR668, MIR770, ZFYVE21, MEG8, WDR25, AMN, APOPT1, HHIPL1, DLK1, EXOC3L4, WDR20, BAG5, C14orf2, CDC42BPB, TECPR2) 0.302860056631233 132 0.175926011722941 1.16745829742345 5737 0.2697059228691 4 3 1 -6.85269092001887 LTS-036 NA NA NA NA LTS-036 chr14 104940968 105055359 114392 * C14orf180 0.356 1 NA 1.22510743945559 41 0.218598289552142 4 4 0 -5.76445655063329 LTS-036 chr14 105055360 105174103 118744 * c(MIR4710, TMEM179, C14orf180, INF2) 0.026780597096772 9 0.118 1.1967234074218 213 0.27199566947137 5 5 0 -6.85635416624337 LTS-036 chr14 105174104 105175085 982 * INF2 0.452 1 NA 1.08578310556817 13 0.21802355200934 3 3 0 -5.76455570874389 LTS-036 chr14 105175086 105344761 169676 * c(ZBTB42, SIVA1, ADSSL1, LINC00638, AKT1, CEP170B, INF2) 0.379871901475056 26 0.088746458217519 1.17385764815705 511 1.19939627681598 4 2 2 -6.73505594572064 LTS-036 chr14 105344762 105344823 62 * CEP170B 0 1 NA 1.17825278676192 3 0.404903692252862 4 4 0 -5.76441058032438 LTS-036 chr14 105344824 105404014 59191 * c(AHNAK2, PLD4, CEP170B) 0.099221910974191 10 0.206581057537552 1.19586103077461 234 0.271658993863349 4 4 0 -6.73688783928067 LTS-036 chr14 105404015 105405942 1928 * AHNAK2 0.42 1 NA 1.13058181105679 41 0.193916464287979 4 4 0 -5.76463743034709 LTS-036 chr14 105405943 105414810 8868 * AHNAK2 0.347054572310902 16 0.10351199608419 1.21237454949452 124 0.223089120248029 3 2 1 -6.73987159214392 LTS-036 chr14 105414811 105417837 3027 * AHNAK2 0 1 NA 0.694494405986352 14 0.3883482138041 2 2 0 -5.76442167405365 LTS-036 chr14 105417838 106518892 1101055 * c(AHNAK2, C14orf79, CRIP1, CRIP2, ELK2AP, PACS2, NUDT14, C14orf80, BRF1, GPR132, JAG2, CDCA4, TEX22, TMEM121, ADAM6, BTBD6, MTA1, FAM30A) 0.177329322266314 29 0.208089852466446 1.18216076467145 1817 0.296174111584383 4 4 0 -6.86521867001973 LTS-036 chr14 106518893 106539113 20221 * character(0) NA 0 NA 0.076 1 NA NA NA NA NA LTS-036 chr14 106539114 106641758 102645 * character(0) NA 0 NA 0.456013666580555 39 0.508979050074072 1 NA NA -5.76441689944319 LTS-036 chr14 106641759 106667651 25893 * character(0) NA 0 NA 0.901 1 NA NA NA NA NA LTS-036 chr14 106667652 106805408 137757 * LINC00226 0.168514881019144 6 0.149968552259021 1.29002310937629 59 0.569890879257307 7 6 1 -6.78638249258445 LTS-036 chr14 106805409 106866465 61057 * character(0) 0.474 1 NA 0.893881614091601 39 0.509874845059875 3 3 0 -5.76545349778413 LTS-036 chr14 106866466 106866748 283 * character(0) 0.457488691853847 3 0.0176162803489651 1.41712102631008 7 0.708520625098858 17 9 8 -11.1599176224783 LTS-036 chr14 106866749 106866807 59 * character(0) NA 0 NA 2.745 1 NA NA NA NA NA LTS-036 chr14 106866808 106940497 73690 * LINC00221 0.422522915353298 16 0.103002831676286 1.81224881234897 45 0.791023300299151 6 3 3 -6.81247784284626 LTS-036 chr14 106940498 106962915 22418 * LINC00221 NA 0 NA 0.931 1 NA NA NA NA NA LTS-036 chr14 106962916 107178965 216050 * character(0) 0.355758327357478 24 0.0677221385034337 1.32086661161657 93 0.321535986845702 5 3 2 -6.80453607274565 LTS-036 chr14 107178966 107283157 104192 * character(0) NA 0 NA 1.05071731329553 53 0.240967879328189 3 NA NA -5.77055701469482 LTS-036 chr15 20169987 20446043 276057 * character(0) 0.491 1 NA 0.803872547181674 23 0.137436223081907 2 2 0 -5.87877009816982 LTS-036 chr15 20446044 22960938 2514895 * c(GOLGA8DP, POTEB, TUBGCP5, CYFIP1, OR4N4, HERC2P3, GOLGA6L1, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.2847387129011 38 0.143493884961475 0.804116920156445 528 0.234242801953947 2 1 1 -7.35820523892362 LTS-036 chr15 22960939 23000272 39334 * CYFIP1 0.002 1 NA 0.842115837717512 57 0.188410895156129 3 3 0 -5.77849211205736 LTS-036 chr15 23000273 23330457 330185 * c(NIPA1, CYFIP1, LOC283683, GOLGA8IP, WHAMMP3, HERC2P2, NIPA2) 0.00197957009983285 7 0.00376069902316805 0.858233727056895 334 0.194094089877322 20 20 0 -17.84529618349 LTS-036 chr15 23330458 23689241 358784 * c(HERC2P7, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.244300580775182 2 0.0183847763108502 1.48273741490596 41 0.479563083670451 5 4 1 -6.74078153890809 LTS-036 chr15 23689242 23689527 286 * character(0) NA 0 NA 0.907 1 NA NA NA NA NA LTS-036 chr15 23689528 25342936 1653409 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, MIR4508, NPAP1, SNORD109B, PWARSN, IPW, NDN, MAGEL2, SNRPN, SNORD116-19, MKRN3, PWRN1, PWRN2, PWAR5, SNURF) 0.000365827362410526 7 0.00335942171894424 0.71348709742244 557 0.172591904581414 2 2 0 -24.3811107064062 LTS-036 chr15 25342937 25438610 95674 * c(SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD116-28, SNORD116-29, PWAR1, SNORD109B, SNORD115-1, IPW) 0.498 1 NA 0.699702839153316 70 0.113416508268532 2 2 0 -5.76687119456488 LTS-036 chr15 25438611 29418520 3979910 * c(SNORD115-10, SNORD115-11, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, LOC100289656, MIR4715, FAM189A1, GABRA5, GABRB3, GABRG3, APBA2, SNORD109B, PWAR4, HERC2P9, NA NA NA NA NA NA NA NA NA LTS-036 WHAMMP2, OCA2, LINC00929, ATP10A, PDCD6IPP2, GOLGA6L7P, UBE3A, HERC2) 0.376431330605742 39 0.147732592979139 0.723140882218137 1544 0.181822553592828 2 1 1 -6.74141794160372 LTS-036 NA NA NA NA LTS-036 chr15 29418521 29443949 25429 * FAM189A1 0 1 NA 0.843391210339464 23 0.332117294390403 3 3 0 -5.76728482572806 LTS-036 chr15 29443950 31229420 1785471 * c(LOC100288637, FAN1, FAM189A1, DKFZP434L187, HERC2P10, NSMCE3, GOLGA8T, TJP1, CHRFAM7A, ARHGAP11B) 0.138722734743135 9 0.210378494887455 0.662660254000864 584 0.186702062305062 2 2 0 -6.91406848070137 LTS-036 chr15 31229421 31233731 4311 * c(FAN1, MTMR10) 0.464 1 NA 0.616986326356878 9 0.102782672556116 2 2 0 -5.76986141645715 LTS-036 chr15 31233732 31779838 546107 * c(OTUD7A, FAN1, LOC283710, MIR211, TRPM1, KLF13, MTMR10) 0.372666666370246 17 0.152391041113855 0.678174569592619 507 0.240920189169374 2 1 1 -6.75370781157037 LTS-036 chr15 31779839 31793930 14092 * OTUD7A 0.017 1 NA 0.501039985624616 3 0.455667642037483 1 1 0 -5.76473141222469 LTS-036 chr15 31793931 33026288 1232358 * c(WHAMMP1, LOC100996255, CHRNA7, OTUD7A, GREM1, SCG5, GOLGA8O, ARHGAP11A) 0.148371529519016 16 0.2204293443109 0.692887056152093 442 0.220116382914295 2 2 0 -6.75031636730226 LTS-036 chr15 33026289 33058857 32569 * c(GREM1, FMN1) 0.5 1 NA 0.631041623996558 17 0.0856508387376947 2 2 0 -5.80691596975686 LTS-036 chr15 33058858 33446311 387454 * FMN1 0.413101999571826 25 0.101935894888242 0.726055781017651 417 0.147209774611578 2 1 1 -6.78083228980036 LTS-036 chr15 33446312 33446429 118 * FMN1 0 1 NA 0.94292324782204 3 0.304844769240565 3 3 0 -5.76441093963797 LTS-036 chr15 33446430 34295414 848985 * c(TMCO5B, CHRM5, FMN1, AVEN, RYR3) 0.128306792617863 9 0.213199437147475 0.728558525604803 669 0.644876580719047 2 2 0 -6.73601615367016 LTS-036 chr15 34295415 34330929 35515 * c(CHRM5, AVEN) NA 0 NA 1.084 1 NA NA NA NA NA LTS-036 chr15 34330930 34673808 342879 * c(CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, EMC4, NOP10, EMC7, AVEN, KATNBL1, SLC12A6) 0.175507611049423 18 0.154296463643243 1.08166617627725 659 0.25093189605479 3 3 0 -6.89049314608054 LTS-036 chr15 34673809 34678835 5027 * c(MIR1233-2, GOLGA8A) NA 0 NA 0.538 1 NA NA NA NA NA LTS-036 chr15 34678836 35043179 364344 * c(MIR1233-2, GOLGA8A, GOLGA8B) 0.00100922107528586 2 0.00777817459305202 0.729008019084618 64 0.261356298625744 20 20 0 -14.1622498837554 LTS-036 chr15 35043180 35043218 39 * character(0) 0.249 1 NA 1.037 1 NA NA NA NA NA LTS-036 chr15 35043219 35375874 332656 * c(ZNF770, GJD2, ACTC1, AQR) 0.247631289765248 11 0.125735508834291 1.14095898022138 467 0.337294655797655 4 3 1 -6.81112490270458 LTS-036 chr15 35375875 35812571 436697 * c(MIR3942, ANP32AP1, DPH6) 0.316 1 NA 1.19729503788121 73 0.488432034144661 4 4 0 -5.76531141098807 LTS-036 chr15 35812572 37402535 1589964 * c(DPH6-AS1, MIR4510, LOC145845, CSNK1A1P1, MEIS2, C15orf41, DPH6) 0.330407941704955 2 0.0862670273047588 1.1660622423026 325 0.259969701536543 4 3 1 -6.90362058996203 LTS-036 chr15 38228444 40710723 2482280 * c(SRP14-AS1, ANKRD63, RASGRP1, GPR176, TMCO5A, SPRED1, FSIP1, FAM98B, IVD, C15orf52, C15orf53, C15orf54, EIF2AK4, PLCB2, PAK6, C15orf56, PHGR1, SRP14, BUB1B, THBS1, DISP2, KNSTRN, BMF) 0.41407880979208 63 0.135768441238959 0.674363310834121 2498 0.148254841158378 2 1 1 -6.99813779531995 LTS-036 chr15 40710724 40712352 1629 * IVD 0.056 1 NA 0.637368395657126 15 0.218205015000638 2 2 0 -5.76468997818619 LTS-036 chr15 40712353 41036448 324096 * c(RAD51-AS1, CHST14, BAHD1, RPUSD2, MRPL42P5, IVD, RMDN3, KNL1, RAD51, C15orf57) 0.137480826422995 10 0.200989109710507 0.679019671803015 696 0.145298514944125 2 2 0 -6.75963800485524 LTS-036 chr15 41036449 41099349 62901 * c(GCHFR, RMDN3, DNAJC17, C15orf62, ZFYVE19) 0.476 1 NA 0.724597471497494 199 0.165742241399814 2 2 0 -5.76459093603636 LTS-036 chr15 41099350 41341656 242307 * c(RHOV, DLL4, INO80, PPP1R14D, DNAJC17, VPS18, SPINT1, CHAC1, ZFYVE19) 0.447515548835027 12 0.0329131087451904 0.69646420501442 598 0.140006057630281 2 1 1 -8.3760447519571 LTS-036 chr15 41341657 41348808 7152 * INO80 0 1 NA 0.758380433946001 15 0.135079236006131 2 2 0 -5.76517512833595 LTS-036 chr15 41348809 41793810 445002 * c(CHP1, OIP5, EXD1, RTF1, ITPKA, NDUFAF1, NUSAP1, INO80, OIP5-AS1) 0.001037393363688 9 0.00242097317438899 0.700092571174033 563 0.190718591024667 20 20 0 -21.8929104734187 LTS-036 chr15 41793811 42150888 357078 * c(JMJD7, PLA2G4B, MAPKBP1, MGA, RPAP1, ITPKA, LTK, SPTBN5, MIR626, TYRO3, JMJD7-PLA2G4B) 0.0422631259887844 10 0.151203174569848 0.728399577948828 1153 0.167636203408176 2 2 0 -6.98760099823813 LTS-036 chr15 42150889 42162467 11579 * c(MIR4310, SPTBN5) 0.482 1 NA 0.731466181413894 85 0.127701614088845 2 2 0 -5.76459632195277 LTS-036 chr15 42162468 42434837 272370 * c(PLA2G4E, PLA2G4F, PLA2G4D, EHD4, SPTBN5) 0.339050753489122 37 0.158286749904075 0.733053552360293 601 0.203455023190515 2 1 1 -6.78486989629059 LTS-036 chr15 42434838 42442741 7904 * PLA2G4F 0 1 NA 0.897732494771573 49 0.260720164643437 3 3 0 -5.76487637348145 LTS-036 chr15 42442742 42859235 416494 * c(VPS39, PLA2G4F, LRRC57, GANC, TMEM87A, HAUS2, ZNF106, MIR627, CAPN3, SNAP23) 0.0630337012388932 17 0.191750469744037 0.724355136686098 981 0.164566409700302 2 2 0 -6.83534308976536 LTS-036 chr15 42859236 42930891 71656 * c(HAUS2, STARD9) 0.4 1 NA 0.723376656581759 71 0.112849708641372 2 2 0 -5.76473340356818 LTS-036 chr15 42930892 43571390 640499 * c(TGM7, TTBK2, CDAN1, UBR1, EPB42, CCNDBP1, STARD9, TMEM62, TGM5) 0.452489356728081 29 0.04781532619066 0.715233095322672 1274 0.143250964412915 2 1 1 -7.74385937482135 LTS-036 chr15 43571391 43571404 14 * TGM7 0 1 NA 1.443 1 NA NA NA NA NA LTS-036 chr15 43571405 45366439 1795035 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, CKMT1B, TGM7, CATSPER2, TRIM69, TERB2, ZSCAN29, STRC, ADAL, PATL2, HYPK, TUBGCP4, PDIA3, MAP1A, MFAP1, CATSPER2P1, CTDSPL2, CKMT1A, B2M, SERINC4, EIF3J-AS1, SORD, TP53BP1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J, PPIP5K1, LCMT2) 0.264204807821992 12 0.159537969262379 0.697662949722111 2907 0.214455720405046 2 1 1 -7.07400926592796 LTS-036 chr15 45366440 45385496 19057 * c(DUOX2, SORD) 0 1 NA 0.713424219001848 27 0.174799958927414 2 2 0 -5.76441632725428 LTS-036 chr15 45385497 45706739 321243 * c(NA, GATM, DUOXA2, DUOX2, DUOX1, SPATA5L1, SHF, DUOXA1, SLC28A2) 0.077392466710431 22 0.184731635234134 0.721971837387809 776 0.186633420287848 2 2 0 -6.80685580718371 LTS-036 chr15 45706740 45779810 73071 * c(MIR147B, SLC30A4, SPATA5L1, C15orf48) 0.39 1 NA 0.734708058714301 181 0.234056374346027 2 2 0 -5.76492352359144 LTS-036 chr15 45779811 51296407 5516597 * c(GABPB1-AS1, DCAF13P3, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, DUT, FAM227B, FBN1, FGF7, CEP152, AP4E1, EID1, GABPB1, GALK2, BLOC1S6, HMGN2P46, SLC24A5, HDC, USP50, SHC4, CTXN2, MYEF2, TRPM7, FLJ10038, DTWD1, SQRDL, SLC12A1, SLC30A4, ATP8B4, SEMA6D, SPPL2A, USP8, COPS2, SECISBP2L) 0.232473042509945 58 0.226586967768432 0.692048240117703 3736 0.173819919447683 2 2 0 -6.95385228501253 LTS-036 chr15 51296408 51500538 204131 * c(CYP19A1, AP4E1, TNFAIP8L3) 0.392 1 NA 0.760176573597857 81 0.269841239332398 2 2 0 -5.77034047396426 LTS-036 chr15 51500539 52601570 1101032 * c(LOC100129973, BCL2L10, MIR1266, MIR4713, GNB5, LEO1, CYP19A1, DMXL2, LYSMD2, SCG3, TMOD3, TMOD2, GLDN, MYO5A, MYO5C, MAPK6) 0.423621348977983 46 0.0794463359120801 0.715466981653458 1561 0.217893023058776 2 1 1 -6.87290020329392 LTS-036 chr15 52601571 52601591 21 * MYO5A 0.316 1 NA 0.759 1 NA NA NA NA NA LTS-036 chr15 52601592 53073084 471493 * c(ARPP19, ONECUT1, MYO5A, FAM214A) 0.133507229968569 9 0.208583915966692 0.685549757204035 485 0.191633243329229 2 2 0 -6.74895512621377 LTS-036 chr15 53073085 53081800 8716 * ONECUT1 0.43 1 NA 0.722222073971024 17 0.108521616171483 2 2 0 -5.76443990486403 LTS-036 chr15 53081801 54847786 1765986 * c(WDR72, ONECUT1, UNC13C) 0.43550692534108 10 0.0422722656649066 0.743770020955574 402 0.152852564592161 2 1 1 -7.55479967731501 LTS-036 chr15 54847787 54919539 71753 * UNC13C 0 1 NA 0.652265009436075 25 0.259877535261002 2 2 0 -5.77000076130859 LTS-036 chr15 54919540 55710365 790826 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, UNC13C, RSL24D1, RAB27A, MIR628, CCPG1, PIGB) 0 10 0 0.720507417271271 282 0.184449212491113 0 0 0 -Inf LTS-036 chr15 55710366 55832430 122065 * c(DYX1C1-CCPG1, C15orf65, DYX1C1) 0.453 1 NA 0.683014950238806 103 0.236232705822478 2 2 0 -5.76738563124578 LTS-036 chr15 55832431 58009759 2177329 * c(MYZAP, GCOM1, LOC145783, PYGO1, PRTG, LINC00926, TEX9, NEDD4, ZNF280D, MNS1, RFX7, TCF12, POLR2M, CGNL1) 0.416121489446191 40 0.122821088872371 0.70812635953895 1869 0.177073534308934 2 1 1 -6.77728915305799 LTS-036 chr15 58009760 58245986 236227 * ALDH1A2 0 1 NA 0.695784664256988 15 0.20880971059339 2 2 0 -5.76716236810077 LTS-036 chr15 58245987 58857301 611315 * c(AQP9, LIPC, ALDH1A2) 0.0789047902076954 13 0.207186865983096 0.733427215720231 287 0.199496966073979 2 2 0 -6.79405069888221 LTS-036 chr15 58857302 58857945 644 * LIPC 0.4 1 NA 0.657224401549127 15 0.153724459744731 2 2 0 -5.76453121203864 LTS-036 chr15 58857946 63009804 4151859 * c(MIR2116, ADAM10, C2CD4A, FAM81A, MGC15885, FOXB1, GTF2A2, ANXA2, C2CD4B, LIPC, MYO1E, FAM63B, RNF111, VPS13C, RORA, BNIP2, HSP90AB4P, ICE2, SLTM, TLN2, CCNB2, GCNT3, LDHAL6B) 0.434163859996035 57 0.0712805797719939 0.694927787420193 2716 0.176809012837089 2 1 1 -7.08011123279276 LTS-036 chr15 63009805 63128005 118201 * c(MIR190A, TLN2) 0 1 NA 0.742432768126806 193 0.159718238792909 2 2 0 -5.76796872520131 LTS-036 chr15 63128006 63600603 472598 * c(LACTB, RPS27L, RAB8B, TPM1, APH1B, TLN2) 0.0434149306274938 9 0.156 0.687530768720473 569 0.184987528890319 2 2 0 -6.97946959348155 LTS-036 chr15 63600604 63674171 73568 * c(CA12, APH1B) 0.498 1 NA 0.74814126298078 175 0.188304423373613 2 2 0 -5.76675908370563 LTS-036 chr15 63674172 64710827 1036656 * c(USP3-AS1, DAPK2, FBXL22, CSNK1G1, PPIB, SNX1, SNX22, FAM96A, HERC1, TRIP4, KIAA0101, USP3) 0.383810716498146 15 0.165825726075816 0.692354751923471 1317 0.15835310406317 2 1 1 -6.76166623277525 LTS-036 chr15 64710828 64792532 81705 * c(ZNF609, TRIP4) 0 1 NA 0.681519043095066 61 0.110651663839196 2 2 0 -5.7743314488523 LTS-036 chr15 64792533 65294903 502371 * c(MIR1272, MTFMT, ZNF609, RBPMS2, ANKDD1A, OAZ2, SPG21, PIF1, PLEKHO2) 0.133256941919304 13 0.223398517085269 0.70790665401209 592 0.179584233659013 2 2 0 -6.73535159971661 LTS-036 chr15 65294904 65369947 75044 * c(MTFMT, SLC51B, KBTBD13, RASL12) 0.372 1 NA 0.679415081589075 159 0.143743970704597 2 2 0 -5.77050479683081 LTS-036 chr15 65369948 68120030 2750083 * c(MIR4311, IQCH-AS1, MIR4511, PDCD7, DENND4A, SNAPC5, CLPX, DIS3L, C15orf61, LCTL, KBTBD13, UBAP1L, SKOR1, SMAD3, SMAD6, HACD3, DPP8, PARP16, TIPIN, ZWILCH, MAP2K1, MAP2K5, IGDCC4, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4, IQCH, SCARNA14, AAGAB, VWA9, MEGF11, CILP, RAB11A, SLC24A1, IGDCC3) 0.336707205103851 41 0.186096339461515 0.708066913245991 3079 0.169580149493158 2 1 1 -6.78057789757645 LTS-036 chr15 68120031 74529130 6409100 * c(NR2E3, HCN4, ADPGK-AS1, LOXL1-AS1, MIR548H4, MIR4312, FEM1B, CORO2B, SENP8, HIGD2B, DRAIC, TBC1D21, CT62, GRAMD2, ITGA11, SPESP1, ARIH1, GLCE, NPTN, EWSAT1, REC114, LOC283731, HEXA, TMEM202, GOLGA6A, ISLR, C15orf59, SKOR1, LOXL1, LINC00593, MYO9A, NEO1, PKM, PML, LRRC49, PAQR5, CLN6, UACA, LARP6, GOLGA6B, THAP10, PARP6, ISLR2, BBS4, CELF6, RPLP1, STRA6, MIR629, MIR630, TLE3, NOX5, THSD4, ANP32A-IT1, NA NA NA NA NA NA NA NA NA LTS-036 HEXA-AS1, CCDC33, CD276, ANP32A, ADPGK, PIAS1, CALML4, STOML1, KIF23) 0.344187549231925 81 0.178562174045905 0.742432583621437 4976 0.170722077366101 2 1 1 -6.92832338501437 LTS-036 NA NA NA NA LTS-036 chr15 74529131 74560776 31646 * CCDC33 0.39 1 NA 0.950108904748875 23 3.56211871324816 3 3 0 -5.76441107380541 LTS-036 chr15 74560777 74742468 181692 * c(CYP11A1, LOC729739, CCDC33, SEMA7A, UBL7) 0.162676756520348 9 0.239428544200097 0.711472752874154 309 0.192414670910182 2 2 0 -6.73744928901587 LTS-036 chr15 74742469 74836316 93848 * c(ARID3B, UBL7-AS1, UBL7) 0.455 1 NA 0.69547251409111 36 0.131687749969629 2 2 0 -5.76724460878336 LTS-036 chr15 74836317 75966885 1130569 * c(MIR4513, SCAMP2, SNUPN, ARID3B, CLK3, CSK, CSPG4, CYP1A1, CYP1A2, SCAMP5, SNX33, SIN3A, ULK3, MAN2C1, MPI, RPP25, COMMD4, IMP3, C15orf39, FAM219B, PTPN9, CPLX3, PPCDC, GOLGA6C, GOLGA6D, MIR631, NEIL1, LMAN1L, EDC3, COX5A) 0.412088476733077 29 0.122365589274206 0.710235206484482 1948 0.162852115078193 2 1 1 -6.76455921310813 LTS-036 chr15 75966886 75967095 210 * CSPG4 0.022 1 NA 0.806609276455696 7 0.1782130880769 2 2 0 -5.76446576092431 LTS-036 chr15 75967096 78466127 2499032 * c(DNM1P35, MIR4313, MIR5003, TSPAN3, HMG20A, CIB2, TMEM266, NRG4, CSPG4, ODF3L1, ETFA, TBC1D2B, ACSBG1, LINGO1-AS1, FBXO22, IDH3A, SCAPER, RCN2, LOC645752, SH2D7, ISL2, FBXO22-AS1, TYRO3P, PEAK1, LINC00597, LINGO1, PSTPIP1, LOC91450, UBE2Q2) 0.308255593193798 32 0.179720751131017 0.705652235175236 2068 0.171735641485638 2 1 1 -6.85142964610808 LTS-036 chr15 78466128 78556895 90768 * c(ACSBG1, DNAJA4) 0 1 NA 0.681847780441675 95 0.167561348762488 2 2 0 -5.76912805081472 LTS-036 chr15 78556896 78916622 359727 * c(CHRNA3, CHRNA5, HYKK, CRABP1, IREB2, DNAJA4, PSMA4, WDR61) 0.0766263214008728 15 0.115521715130389 0.690615395588818 655 0.198338271000445 2 2 0 -6.92903697831419 LTS-036 chr15 78916623 79045521 128899 * c(CHRNB4, LOC646938) 0.43 1 NA 0.689669620870706 75 0.136329011143187 2 2 0 -5.77039136080643 LTS-036 chr15 79045522 79224747 179226 * c(MORF4L1, ADAMTS7, CTSH, LOC646938) 0.33988065618234 21 0.141587126129865 0.747165716703514 269 0.278880873815233 2 1 1 -6.79531295320146 LTS-036 chr15 79224748 79231478 6731 * CTSH 0.431 1 NA 0.795161056862879 35 0.196228164229742 2 2 0 -5.76555292165798 LTS-036 chr15 79231479 79307632 76154 * c(CTSH, RASGRF1) 0.109216640481987 9 0.235376530501898 0.770461462096844 165 0.364775756324443 2 2 0 -6.7467817257021 LTS-036 chr15 79307633 79310288 2656 * RASGRF1 0.5 1 NA 0.98595746576528 7 0.296477494528514 3 3 0 -5.76441273752579 LTS-036 chr15 79310289 81271406 1961118 * c(ST20-MTHFS, MTHFS, FAH, MESDC2, KIAA1024, TMED3, ST20-AS1, LINC00927, ANKRD34C, ST20, MIR184, ZFAND6, CEMIP, ABHD17C, RASGRF1, BCL2A1, MIR549A, ANKRD34C-AS1, ARNT2) 0.311273801905477 35 0.218259501703897 0.726277791215262 1181 0.151869866837249 2 1 1 -6.81006877690616 LTS-036 chr15 81271407 81289739 18333 * MESDC2 0.47 1 NA 0.740094552739261 27 0.146197793662541 2 2 0 -5.76495812363482 LTS-036 chr15 81289740 83427020 2137281 * c(NA, UBE2Q2P2, NA, MIR4514, CFAP161, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, ADAMTS7P1, GOLGA6L9, MESDC1, CPEB1, GOLGA6L10, SCARNA15, EFL1, STARD5, AP3B2, MEX3B) 0.458443152752465 23 0.0357372382484777 0.722255951064563 1183 0.182391787092303 2 1 1 -8.57950324954169 LTS-036 chr15 83427021 83427394 374 * character(0) 0 1 NA 0.776600392057116 9 0.0902456524037462 2 2 0 -5.76458945102088 LTS-036 chr15 83427395 85448875 2021481 * c(UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, SEC11A, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, NMB, HDGFRP3, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, SH3GL3, BNC1, EFTUD1P1, FAM103A1, WDR73, SLC28A1, HOMER2, ZNF592) 0.312740537995615 44 0.187192537199234 0.723792406587816 1651 0.249336539288466 2 1 1 -6.82277643012043 LTS-036 chr15 85448876 85461851 12976 * c(LOC642423, SLC28A1) 0.482 1 NA 0.699857137317201 9 0.190259690948976 2 2 0 -5.76452656778644 LTS-036 chr15 85461852 89402239 3940388 * c(MIR1276, MIR1179, MIR3529, AKAP13, AGBL1, LINC00052, ACAN, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, PDE8A, DET1, LOC642423, KLHL25, AEN, MRPS11, AGBL1-AS1, SLC28A1) 0.42847308613048 70 0.0866147379863203 0.741473485078662 1770 0.177969171586007 2 1 1 -6.96925881740156 LTS-036 chr15 89402240 89402596 357 * ACAN 0.446 1 NA 0.786796421296367 9 0.13062733251506 2 2 0 -5.76452033037486 LTS-036 chr15 89402597 89740469 337873 * c(ABHD2, HAPLN3, ACAN, MFGE8) 0.181031500942642 9 0.244226898145511 0.748326301563301 253 0.18778135307959 2 2 0 -6.75892983759718 LTS-036 chr15 89740470 89876722 136253 * c(ABHD2, POLG, FANCI, RLBP1) 0.463 1 NA 0.704724131931283 429 0.154953841916334 2 2 0 -5.76531881996128 LTS-036 chr15 89876723 90255193 378471 * c(MIR9-3HG, LINC00928, KIF7, MIR9-3, RHCG, PLIN1, POLG, WDR93, PEX11A, TICRR) 0.4570235060077 25 0.0383093983246931 0.728583207265765 569 0.138011499280896 2 1 1 -8.34692944613398 LTS-036 chr15 90255194 90273040 17847 * WDR93 0 1 NA 0.79160814404072 32 0.18236167703221 2 2 0 -5.76762317815696 LTS-036 chr15 90273041 90744586 471546 * c(C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, MESP2, ANPEP, IDH2, ARPIN, ZNF710, MESP1, WDR93) 0.308463526108779 31 0.196608032083051 0.74460747728652 673 0.17242465216833 2 1 1 -6.8364051964369 LTS-036 chr15 90744587 90760991 16405 * SEMA4B 0.413 1 NA 0.706512076101367 19 0.109383359329679 2 2 0 -5.76456688040425 LTS-036 chr15 90760992 90777267 16276 * c(SEMA4B, CIB1) 0.447743082148768 10 0.0305979302132241 0.736196919587207 144 0.18436120090461 2 1 1 -8.57222675489242 LTS-036 chr15 90777268 90777321 54 * CIB1 0 1 NA 0.771 1 NA NA NA NA NA LTS-036 chr15 90777322 91185291 407970 * c(CIB1, GABARAPL3, ZNF774, GDPGP1, TTLL13P, NGRN, CRTC3, IQGAP1) 0.129295315568952 11 0.239407792080982 0.701352539993525 593 0.153468249301262 2 2 0 -6.73947621235965 LTS-036 chr15 91185292 91185485 194 * CRTC3 0.429 1 NA 0.746427539391245 5 0.146024655452427 2 2 0 -5.76441933248042 LTS-036 chr15 91185486 91433265 247780 * c(FES, FURIN, BLM, CRTC3) 0.390304495425317 12 0.136863872869979 0.69550569694322 358 0.128118911482257 2 1 1 -6.74186937528154 LTS-036 chr15 91433266 91449015 15750 * c(FES, MAN2A2) 0 1 NA 0.736726545790464 77 0.162578689081751 2 2 0 -5.76469185560664 LTS-036 chr15 91449016 91543761 94746 * c(PRC1-AS1, VPS33B, HDDC3, MAN2A2, UNC45A, PRC1, RCCD1) 0.0177196807507645 15 0.12186987596066 0.714479459833539 503 0.178023053938746 3 3 0 -7.19524765030315 LTS-036 chr15 91543762 91827438 283677 * c(VPS33B, SV2B) 0.452 1 NA 0.752655353601031 156 0.129229517193805 2 2 0 -5.78924234043511 LTS-036 chr15 91827439 94841430 3013992 * c(LINC00930, MIR3175, LINC01578, CHD2, C15orf32, SLCO3A1, FAM174B, MCTP2, RGMA, ASB9P1, ST8SIA2, SV2B) 0.390832363295218 42 0.151607897893984 0.718434577632645 1138 0.193855362275066 2 1 1 -6.73438818291848 LTS-036 chr15 94841431 94885570 44140 * MCTP2 0 1 NA 0.712127584508953 61 0.19719604680195 2 2 0 -5.76443373896457 LTS-036 chr15 94885571 98516107 3630537 * c(MIR1469, SPATA8-AS1, LINC00924, SPATA8, LINC01197, LOC440311, MCTP2, NR2F2-AS1, NR2F2, ARRDC4, LINC00923) 0.138673942054044 10 0.197542372388531 0.740595860649073 502 0.182151090486031 2 2 0 -6.80522721902643 LTS-036 chr15 98516108 98982627 466520 * c(FAM169B, ARRDC4) 0.468 1 NA 0.751356449808462 59 0.13788644647523 2 2 0 -5.79777201891325 LTS-036 chr15 98982628 102388991 3406364 * c(LOC100507472, MIR4714, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, FAM169B, IGF1R, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3) 0.404575303037044 83 0.0994132935707474 0.725839791569739 2723 0.356361793709526 2 1 1 -6.75944030230368 LTS-036 chr15 102388992 102516544 127553 * c(FAM138E, OR4F4, WASH3P, OR4F13P) NA 0 NA 0.761415671768289 17 0.115645725487497 2 NA NA -5.78565240535174 LTS-036 chr16 81704 81779 76 * character(0) 0.242 1 NA 1.57 1 NA NA NA NA NA LTS-036 chr16 81780 747454 665675 * c(LOC100134368, MIR3176, MIR5587, STUB1, MRPL28, WFIKKN1, PRR35, FBXL16, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, JMJD8, ARHGDIG, MPG, NME4, POLR3K, LUC7L, RAB40C, TMEM8A, RHBDF1, LINC00235, PDIA2, CAPN15, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.319085531369344 93 0.0643621252733739 0.908940914862825 2424 0.224603840255748 3 2 1 -6.92946597680029 LTS-036 chr16 747455 771234 23780 * c(FBXL16, FAM173A, METRN) 0 1 NA 0.867572163880114 36 0.498326013642691 3 3 0 -5.76518220274262 LTS-036 chr16 771235 1035422 264188 * c(MSLN, RPUSD1, CCDC78, SOX8, PRR25, GNG13, CHTF18, NARFL, LMF1, FAM173A, MIR662, HAGHL) 0.139601186887907 11 0.155723005832326 0.955053808968309 772 0.236341217288682 3 3 0 -6.76321233540615 LTS-036 chr16 1035423 1035591 169 * SOX8 0.35 1 NA 0.888695322500539 5 0.110518324272493 3 3 0 -5.76447979362088 LTS-036 chr16 1035592 2672816 1637225 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, SSTR5-AS1, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, SOX8, IGFALS, C1QTNF8, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, NA NA NA NA NA NA NA NA NA LTS-036 RPS2, MLST8, TPSB2, CCDC154, HS3ST6, UNKL, LINC00254, ABCA17P, LOC652276, MRPS34, SSTR5, SNORA78, TPSAB1, TSC2, UBE2I, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, CACNA1H, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.283010847786784 208 0.0839960028954679 0.935953713706232 5053 0.36111395652776 3 2 1 -7.13119652194198 LTS-036 NA NA NA NA LTS-036 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.176 1 NA NA NA NA NA LTS-036 chr16 2692191 2732840 40650 * c(ERVK13-1, KCTD5, FLJ42627) NA 0 NA 0.506608055785371 77 0.319536042249776 1 NA NA -5.7667921804799 LTS-036 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.822 1 NA NA NA NA NA LTS-036 chr16 2747831 8876692 6128862 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, ABAT, EEF2KMT, NLRC3, CLUAP1, MGRN1, SRRM2, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, TMEM114, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, MEFV, SMIM22, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, NA NA NA NA NA NA NA NA NA LTS-036 KCTD5, RBFOX1, ZSCAN32, PPL, HCFC1R1, ALG1, NMRAL1, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, METTL22, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, SEC14L5) 0.256236136940469 167 0.110747363077794 0.944300859170831 5388 0.337183293936989 3 2 1 -7.18746543200413 LTS-036 NA NA NA NA LTS-036 chr16 8876693 8876845 153 * ABAT 0 1 NA 1.01825639815132 5 0.59920338784089 3 3 0 -5.76441063129589 LTS-036 chr16 8876846 8948437 71592 * c(ABAT, CARHSP1, TMEM186, PMM2) 0.109164730865179 21 0.166562872442182 0.974324170244242 195 0.388765924516998 3 3 0 -6.73336196450834 LTS-036 chr16 8948438 8992342 43905 * c(CARHSP1, USP7) 0.26 1 NA 1.04467014414932 61 0.226037605072925 3 3 0 -5.7669229749794 LTS-036 chr16 8992343 15126890 6134548 * c(MIR365A, MIR548X, MIR4718, RMI2, TEKT5, EMP2, ERCC4, PDXDC1, CLEC16A, NOMO1, RSL1D1, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, NUBP1, PARN, TXNDC11, BFAR, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, ATF7IP2, SNN, PLA2G10, SOCS1, SNX29, NPIPA1, LITAF) 0.291417843736601 93 0.0945530244217628 0.923748005106019 2989 0.227266202257565 3 2 1 -7.16954826265551 LTS-036 chr16 15126891 15131962 5072 * c(NTAN1, PDXDC1) 0.011 1 NA 0.911856276978509 59 0.230913299908884 3 3 0 -5.76465979167352 LTS-036 chr16 15131963 28132951 13000989 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR3180-4, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SLC5A11, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, PDXDC1, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, MPV17L, PDZD9, ANKS4B, TNRC6A, GP2, NOMO2, IL21R-AS1, GTF3C1, EEF2K, PKD1P1, ZKSCAN2, NA NA NA NA NA NA NA NA NA LTS-036 AQP8, ACSM2B, IL4R, ABCC6, SLC7A5P2, KNOP1, CRYM-AS1, FLJ21408, NOMO3, ABCC1, MYH11, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, RRN3, NDE1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, MIR484, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 KDM8, TMC5, TMC7, LOC81691, DCTN5, C16orf45, COG7, KIAA0430, CCP110, HS3ST4, HS3ST2) 0.216616163643756 167 0.13189359836607 0.92696349674393 9145 0.257015244817219 3 3 0 -7.41148046674516 LTS-036 NA NA NA NA LTS-036 chr16 28132952 28167914 34963 * XPO6 0.414 1 NA 0.969196232223467 51 0.270821586592919 3 3 0 -5.76441775535446 LTS-036 chr16 28167915 28620807 452893 * c(SGF29, CLN3, XPO6, IL27, NUPR1, SBK1, APOBR, SULT1A2, SULT1A1) 0.396176441280291 24 0.0837506218882383 0.923020672298594 486 0.245249473627618 3 2 1 -6.90422352123873 LTS-036 chr16 28620808 28621311 504 * SULT1A1 0.244 1 NA 0.517044480268566 3 0.167687208814507 1 1 0 -5.76456538596093 LTS-036 chr16 28621312 29367177 745866 * c(ATP2A1-AS1, MIR4721, MIR4517, ATXN2L, SH2B1, LAT, SNX29P2, ATP2A1, RRN3P2, SULT1A1, TUFM, RABEP2, SPNS1, NFATC2IP, CD19) 0.272425212781202 28 0.0634838124599054 0.92256040232578 910 0.21626144890407 4 3 1 -7.48920527654266 LTS-036 chr16 29367178 29564513 197336 * c(SLX1B-SULT1A4, SNX29P2, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, SULT1A3) NA 0 NA 0.415510293627891 39 0.556188424998727 1 NA NA -5.76811003870948 LTS-036 chr16 29564514 29624261 59748 * c(SLX1B-SULT1A4, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.989 1 NA NA NA NA NA LTS-036 chr16 29624262 29859252 234991 * c(SLX1B-SULT1A4, PRRT2, QPRT, C16orf54, KIF22, MAZ, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, ZG16, SPN, PAGR1, SLC7A5P1, MVP) 0.314043793534953 4 0.18622097089211 1.00390399650259 548 0.239248017287231 3 2 1 -6.76088455746768 LTS-036 chr16 29859253 33965652 4106400 * c(CLUHP3, MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, FUS, KCTD13, ASPHD1, TBC1D10B, PYDC1, SEZ6L2, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, SLC6A10P, LOC390705, SMG1P2, CDIPT-AS1, YBX3P1, NA NA NA NA NA NA NA NA NA LTS-036 NA, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, LINC00273, SLC5A2, ZNF747, SNORA30, STX4, TBX6, TGFB1I1, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, ZNF768, ZNF668, ARMC5, HSD3B7, YPEL3, FAM57B, KAT8, DOC2A, HIRIP3, CCDC189, ZNF764, BCL7C, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.304965072333292 160 0.10967095422073 0.911303690461546 5571 0.211381309625058 3 2 1 -7.08038653587993 LTS-036 NA NA NA NA LTS-036 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.92180382499025 115 0.221048947918892 3 NA NA -5.79120079898572 LTS-036 chr16 46508169 46602819 94651 * ANKRD26P1 0.293 1 NA 0.944310932303765 97 0.276956846695061 3 3 0 -5.76512952780161 LTS-036 chr16 46602820 57689805 11086986 * c(MIR3935, LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, CES1, CETP, NUDT21, ADCY7, C16orf78, ANKRD26P1, SNX20, CYLD, CPNE2, ADGRG5, CES5A, ZNF423, RPGRIP1L, ARL2BP, ORC6, CNEP1R1, DKFZP434H168, AMFR, TOX3, GNAO1, LOC283856, BRD7, MT1DP, C16orf87, C16orf97, CES1P2, MIR138-2, MMP2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, PHKB, POLR2C, LPCAT2, HEATR3, NA NA NA NA NA NA NA NA NA LTS-036 OGFOD1, DOK4, VPS35, COQ9, CIAPIN1, BBS2, RBL2, SALL1, CCL17, CCL22, CX3CL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, SIAH1, SLC6A2, SLC12A3, FTO, IRX6, IRX3, SHCBP1, FAM192A, CHD9, ITFG1, NETO2, LONP2, NLRC5, CAPNS2, MT4, GPT2, ABCC11, NKD1, CBLN1, RSPRY1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.286311632489689 146 0.0904519111386012 0.909107450207674 7151 0.228203785729615 3 2 1 -7.59546591682049 LTS-036 NA NA NA NA LTS-036 chr16 57689806 57690606 801 * ADGRG1 0 1 NA 1.02131297420626 9 0.791432526779412 3 3 0 -5.76441184301169 LTS-036 chr16 57690607 57732888 42282 * c(ADGRG3, DRC7, ADGRG1) 0.035372210796994 14 0.139148351539872 1.01974784508252 150 0.425039386831317 5 5 0 -6.78890988784902 LTS-036 chr16 57732889 57735900 3012 * DRC7 0.363 1 NA 0.843480438006667 7 0.0879732102079134 3 3 0 -5.76925288275781 LTS-036 chr16 57735901 66503680 8767780 * c(CDH5, LINC00920, CDH8, CDH11, KATNB1, CNGB1, CSNK2A2, BEAN1, PRSS54, CNOT1, GOT2, LINC00922, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MMP15, SLC38A7, ZNF319, APOOP5, GINS3, NDRG4, SNORA46, SNORA50A, USB1, SETD6, DRC7) 0.260489725092601 82 0.113641886291029 0.936983464116285 2189 0.265245767279683 3 2 1 -7.21493619555022 LTS-036 chr16 66503681 66511390 7710 * c(BEAN1, TK2) NA 0 NA 0.802 1 NA NA NA NA NA LTS-036 chr16 66511391 70713654 4202264 * c(CDH3, SNORD111B, MIR1538, MIR1972-1, SMG1P7, LOC100506083, CKLF-CMTM1, CDH16, NUTF2, CTCF, NFAT5, WWP2, DDX19B, CMTM1, EXOSC6, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, AARS, NQO1, DYNC1LI2, AGRP, E2F4, FUK, SF3B3, CES3, EDC4, PLA2G15, COG4, PLEKHG4, LRRC29, VPS4A, TERB1, CES4A, EXOC3L1, PDXDC2P, CLEC18C, NOB1, TMEM208, FHOD1, ZDHHC1, HAS3, HSD11B2, HSF4, CLEC18A, NA NA NA NA NA NA NA NA NA LTS-036 C16orf86, LCAT, MIR140, MIR328, NFATC3, PARD6A, CKLF, NIP7, FAM96B, TPPP3, PRMT7, DUS2, CHTF8, PDPR, LRRC36, DDX19A, FBXL8, SMPD3, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, PDF, DPEP2, DPEP3, ST3GAL2, ACD, KIAA0895L, SLC9A5, SLC12A4, SNTB2, SNORD111, TERF2, TK2, CA7, FAM65A, TANGO6, ELMO3, ESRP2, CENPT, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, COG8, B3GNT9, UTP4, CBFB, TRADD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 CES2, NAE1, NOL3, SLC7A6, ATP6V0D1, MTSS1L, CDH1) 0.280356895574023 67 0.111815336069659 0.888273517398088 8003 1.54495027313429 4 3 1 -6.84860843355952 LTS-036 NA NA NA NA LTS-036 chr16 70713655 70713787 133 * MTSS1L 0.426 1 NA 0.687701522236789 3 0.180095345118449 2 2 0 -5.76441419734251 LTS-036 chr16 70713788 70874094 160307 * c(VAC14-AS1, HYDIN, VAC14, MTSS1L) 0.340520516767526 3 0.0248260615751539 0.945133059236764 218 0.370663181470726 3 2 1 -6.87287252690132 LTS-036 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 1.034 1 NA NA NA NA NA LTS-036 chr16 70883627 71237702 354076 * HYDIN 0.416917934975838 83 0.0647332508854821 1.09113662251973 587 0.207125723919657 4 2 2 -6.94930534722705 LTS-036 chr16 71237703 71264523 26821 * HYDIN 0.337 1 NA 1.01451041592884 5 0.487070118155487 3 3 0 -5.76452157045186 LTS-036 chr16 71264524 71607561 343038 * c(CHST4, HYDIN, CMTR2, TAT, ZNF19, ZNF23, CALB2) 0.224705321645603 14 0.157319947667376 1.02315372621626 463 0.214526304536185 4 3 1 -6.9856096446377 LTS-036 chr16 71607562 71609745 2184 * TAT NA 0 NA 0.629 1 NA NA NA NA NA LTS-036 chr16 71609746 75478588 3868843 * c(SNORA70D, LINC01568, CFDP1, TMEM170A, CTRB1, ZFP1, AP1G1, DHODH, LDHD, MLKL, PHLPP2, GLG1, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, CTRB2, ZFHX3, CLEC18B, TXNL4B, RFWD3, ZNF821, PSMD7, TAT, SNORD71, FA2H, WDR59, PMFBP1, ZNRF1, MARVELD3, BCAR1, DHX38, IST1) 0.275684669957217 80 0.0999602325990982 0.889768435379074 2797 0.233281112288707 3 2 1 -7.40054482138993 LTS-036 chr16 75478589 75479153 565 * TMEM170A 0.016 1 NA 0.786304809012643 13 0.31614880057113 2 2 0 -5.76443954358076 LTS-036 chr16 75479154 76495842 1016689 * c(GABARAPL2, TMEM170A, ADAT1, CHST5, KARS, CHST6, TERF2IP, TMEM231, CNTNAP4) 0.0499820526365345 17 0.133660704111303 0.919705457666171 520 0.268002458765314 3 3 0 -6.8619063990203 LTS-036 chr16 76495843 76496025 183 * CNTNAP4 0.348 1 NA 0.824048842015952 4 0.099498743710662 2 2 0 -5.76462658501422 LTS-036 chr16 76496026 80718879 4222854 * c(SYCE1L, MIR4719, CLEC3A, CDYL2, ADAMTS18, MON1B, NUDT7, MAF, WWOX, VAT1L, DYNLRB2, CNTNAP4) 0.239598187698216 21 0.136545806024415 0.887635600536407 870 0.207648777314761 3 2 1 -7.58839816112342 LTS-036 chr16 80718880 81010073 291194 * c(CDYL2, CMC2) 0 1 NA 0.831201882439085 15 0.177541544433972 2 2 0 -5.88457929107698 LTS-036 chr16 81010074 81161608 151535 * c(PKD1L2, C16orf46, ATMIN, GCSH, CENPN, CMC2) 0.0422723905621688 12 0.139567839483822 0.904931154047964 302 0.312436807401388 3 3 0 -6.85782090694114 LTS-036 chr16 81161609 81180988 19380 * PKD1L2 0.344 1 NA 0.965420270704896 29 0.158092555667987 3 3 0 -5.76444836745449 LTS-036 chr16 81180989 89603586 8422598 * c(LOC100129617, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR5093, MIR5189, CDH13, CDH15, MPHOSPH6, EMC8, PKD1L2, RNF166, DNAAF1, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FOXF1, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, IL17C, LINC00304, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, NA NA NA NA NA NA NA NA NA LTS-036 LOC400548, FENDRR, LOC400558, C16orf74, MVD, GINS2, TRAPPC2L, PLCG2, BCO1, NECAB2, KLHDC4, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, MTHFSD, SPG7, LINC00917, CA5A, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, ZNF469, CBFA2T3, MBTPS1, TAF1C, USP10, KCNG4, SDR42E1, KIAA0513, PIEZO1, ATP2C2) 0.233235594159999 260 0.132434626379698 0.874508212180976 6379 0.471856910882486 3 2 1 -7.43836211316681 LTS-036 NA NA NA NA LTS-036 chr16 89603587 89613037 9451 * SPG7 0 1 NA 0.905257733207081 21 0.311831731181143 3 3 0 -5.7647243458579 LTS-036 chr16 89613038 89630630 17593 * c(SNORD68, RPL13, SPG7) 0.00113044697518608 10 0.00316227766016838 0.910622872225943 112 0.274077264227461 20 20 0 -13.5934973417906 LTS-036 chr16 89630631 89653032 22402 * c(CPNE7, RPL13) 0.329 1 NA 0.812519202038796 53 0.209033825152905 2 2 0 -5.76928924692295 LTS-036 chr16 89653033 90161231 508199 * c(VPS9D1-AS1, URAHP, TUBB3, PRDM7, SPATA2L, SPATA33, AFG3L1P, DPEP1, FANCA, TCF25, GAS8, CPNE7, MC1R, CHMP1A, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.232488077756544 45 0.105691264702167 0.858884360376735 1534 0.192861698379747 2 2 0 -7.39826036451015 LTS-036 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.488 1 NA NA NA NA NA LTS-036 chr17 6004 6115 112 * DOC2B 0.105 1 NA 0.917199826477145 3 0.25784943927287 3 3 0 -5.76441377739204 LTS-036 chr17 6116 767388 761273 * c(DBIL5P, LOC100506388, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, DOC2B, RPH3AL) 0.160799319855409 33 0.0912070052300277 0.834122553639892 621 0.238340818948061 2 2 0 -6.93803372292998 LTS-036 chr17 767389 800177 32789 * NXN NA 0 NA 0.989380895808626 5 0.100502238781034 3 NA NA -5.76487503660521 LTS-036 chr17 800178 882567 82390 * NXN NA 0 NA 2.8 1 NA NA NA NA NA LTS-036 chr17 882568 902869 20302 * c(TIMM22, NXN) 0.044 1 NA 3.30285119615198 27 0.567060323295864 12 12 0 -5.76441034220826 LTS-036 chr17 902870 1547272 644403 * c(PITPNA-AS1, MIR3183, SLC43A2, CRK, TUSC5, ABR, TIMM22, MYO1C, INPP5K, PITPNA, BHLHA9, YWHAE, SCARF1) 0.0213045423446049 27 0.0184884656427558 3.42936046526148 946 1.66598246810695 18 18 0 -6.75253028985311 LTS-036 chr17 1547273 1548083 811 * SCARF1 NA 0 NA 1.622 1 NA NA NA NA NA LTS-036 chr17 1548084 1944890 396807 * c(PRPF8, SMYD4, WDR81, RTN4RL1, DPH1, MIR22, SERPINF1, SERPINF2, RPA1, TLCD2, RILP, MIR22HG, SCARF1) 0.0799290399263757 29 0.0288809344444434 1.51254682366362 936 0.374003846755798 5 5 0 -6.81149783024416 LTS-036 chr17 1944891 1944982 92 * DPH1 NA 0 NA 1.293 1 NA NA NA NA NA LTS-036 chr17 1944983 2930438 985456 * c(MIR1253, OVCA2, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, HIC1, MIR132, MIR212, MNT, PAFAH1B1, TSR1, SRR, SNORD91A, SNORD91B, METTL16, SGSM2) 0.0595766454986149 20 0.05159444584551 1.37378201879779 968 0.315078402686261 5 5 0 -6.79389247120535 LTS-036 chr17 2930439 2930455 17 * RAP1GAP2 NA 0 NA 1.643 1 NA NA NA NA NA LTS-036 chr17 2930456 3828822 898367 * c(P2RX5-TAX1BP3, CTNS, TRPV3, RAP1GAP2, SHPK, OR1A2, TAX1BP3, ITGAE, OR3A4P, ASPA, ATP2A3, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, NCBP3, OR1D4, TRPV1, EMC6, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, CAMKK1, SPATA22) 0.0512587259059658 48 0.0651659059740478 1.86436453492444 1457 0.694417465448451 7 7 0 -6.7390825625827 LTS-036 chr17 3828823 3845927 17105 * ATP2A3 0.096 1 NA 1.69137846805564 62 0.41303483635696 6 6 0 -5.7644750221745 LTS-036 chr17 3845928 3857046 11119 * ATP2A3 0.0841085857992937 2 0.00919238815542512 1.60656480021711 54 0.443778716160252 4 4 0 -6.73725491380902 LTS-036 chr17 3857047 3867474 10428 * ATP2A3 NA 0 NA 0.676 1 NA NA NA NA NA LTS-036 chr17 3867475 3928382 60908 * c(ZZEF1, ATP2A3) 0.215000947637922 6 0.0642017652924487 0.612173262766437 138 0.177736013217872 1 1 0 -6.8334047100293 LTS-036 chr17 3928383 3935437 7055 * ZZEF1 NA 0 NA 1.196 1 NA NA NA NA NA LTS-036 chr17 3935438 8139577 4204140 * c(C17orf107, LOC100130950, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, CNTROB, RPL29P2, CYB5D1, CYB5D2, ZFP3, GGT6, SPNS2, CLDN7, DNAH2, KCTD11, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, CAMTA2, KDM6B, ZZEF1, NA NA NA NA NA NA NA NA NA LTS-036 WSCD1, CTDNEP1, ELP5, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, SNORA67, PELP1, GP1BA, VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, GUCY2D, LOC339166, TMEM95, SMTNL2, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, MED11, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MIR324, ATP1B2, NUP88, MINK1, MED31, DERL2, YBX2, ANKFY1, PER1, PFN1, PLD2, POLR2A, FAM64A, XAF1, BORCS6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 SLC52A1, WRAP53, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, SLC35G6, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, SCARNA21, VAMP2, C1QBP, TP53, LOC728392, UBE2G1, ZNF232, MIS12, PHF23, CTC1, PITPNM3, TEKT1, SLC25A11, ZMYND15, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, TXNDC17, TNK1, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, FXR2, MPDU1, SPAG7, CD68, ACAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 KIAA0753) 0.0809968223759727 229 0.0632063866008211 1.15957267108501 9458 0.286365908665516 4 4 0 -6.84515554753672 LTS-036 NA NA NA NA LTS-036 chr17 8139578 8455482 315905 * c(LOC100128288, KRBA2, ODF4, ARHGEF15, RANGRF, SLC25A35, MYH10, PFAS, RPL26, RNF222, CTC1, NDEL1) 0.0865467681259301 21 0.0894007297296307 1.43168350203458 800 0.367592677030154 5 5 0 -6.75714589814723 LTS-036 chr17 8455483 8457143 1661 * MYH10 NA 0 NA 0.953 1 NA NA NA NA NA LTS-036 chr17 8457144 8771078 313935 * c(CCDC42, PIK3R6, MFSD6L, SPDYE4, MYH10) 0.110492222639537 2 0.0226274169979695 1.18264577439389 233 0.265428842374123 3 3 0 -6.86397337460055 LTS-036 chr17 8771079 8782184 11106 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-036 chr17 8782185 8787955 5771 * PIK3R5 0 1 NA 0.661463763774749 55 0.197773682853987 2 2 0 -5.7649721483668 LTS-036 chr17 8787956 8792003 4048 * PIK3R5 0.275 1 NA 0.683516535194565 31 0.122866506805653 2 2 0 -5.76476381894446 LTS-036 chr17 8792004 9087029 295026 * c(PIK3R5, NTN1) 0.291743593098975 10 0.111933561643603 0.573604827499895 107 0.19206329960784 1 1 0 -7.19558036165983 LTS-036 chr17 9087030 9712255 625226 * c(USP43, CFAP52, DHRS7C, NTN1, STX8) 0.185 1 NA 0.663807260938919 371 0.139199506728878 2 2 0 -5.87463436657769 LTS-036 chr17 9712256 14111608 4399353 * c(MIR744, LINC00675, MAGOH2P, COX10-AS1, TMEM220-AS1, COX10, DNAH9, LINC00670, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, ADPRM, RCVRN, ELAC2, SCO1, MAP2K4, PIRT, ZNF18, GAS7, MYH13, GLP2R, MYOCD, CDRT15P1, ARHGAP44, HS3ST3A1) 0.128028750241732 47 0.131124779039188 0.660023877621837 2848 0.158062462465651 2 2 0 -7.37601573921142 LTS-036 chr17 14111609 14139107 27499 * COX10 0.46 1 NA 0.592778040058568 15 0.306698704330643 2 2 0 -5.77069051979345 LTS-036 chr17 14139108 15469181 1330074 * c(TVP23C-CDRT4, MIR4731, CDRT15, TVP23C, CDRT4, PMP22, TEKT3, MGC12916, CDRT7, HS3ST3B1) 0.220490784090301 9 0.0827209163392186 0.60226384688065 434 0.175042063143342 2 2 0 -7.92079659687548 LTS-036 chr17 15469182 15476516 7335 * TRIM16 0.325636817548444 4 0.0689492567037528 0.362650742616004 66 0.174181381361653 3 2 1 -6.96192456466702 LTS-036 chr17 15476517 16649035 1172519 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.22796978189805 42 0.0720614212464322 0.597949540580326 1403 0.153048601939197 2 2 0 -8.32571271444463 LTS-036 chr17 16649036 16664881 15846 * c(USP32P1, CCDC144A) NA 0 NA 1.008 1 NA NA NA NA NA LTS-036 chr17 16664882 16836398 171517 * c(FAM106CP, USP32P1, TNFRSF13B, KRT16P2, CCDC144A) 0.211 1 NA 0.981496806156638 42 0.46437009462834 3 3 0 -5.76443662044547 LTS-036 chr17 16836399 17398120 561722 * c(NA, FLCN, PLD6, MPRIP, TNFRSF13B, RASD1, MED9, NT5M, COPS3) 0.195339921272448 6 0.0962593718381056 0.626274509866294 707 0.131827765438525 2 2 0 -7.24009051296837 LTS-036 chr17 17398121 17697541 299421 * c(PEMT, RAI1, SMCR5, RASD1) 0 1 NA 0.659552260877128 111 0.110873104082303 2 2 0 -5.86245959887805 LTS-036 chr17 17697542 18030524 332983 * c(RAI1, TOM1L2, DRG2, MYO15A, SREBF1, MIR33B, GID4, DRC3, ATPAF2) 0.0436566336091554 15 0.10171589752602 0.638127049172049 825 0.161405140024235 2 2 0 -7.35222965877683 LTS-036 chr17 18030525 18042276 11752 * MYO15A 0.339 1 NA 0.703924512386841 49 0.132755769696669 2 2 0 -5.76453227323631 LTS-036 chr17 18042277 18315385 273109 * c(MIEF2, SMCR8, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A) 0.164742589355443 32 0.124179305844412 0.640689100034938 1008 0.158957081629553 2 2 0 -6.83202337091384 LTS-036 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.266 1 NA NA NA NA NA LTS-036 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.279465430330562 3 0.0972162537850539 0.229544475173031 66 0.212725816941605 0 0 0 -7.38820356746447 LTS-036 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.827 1 NA NA NA NA NA LTS-036 chr17 18483256 21087671 2604416 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, FBXW10, GRAP, AKAP10, SLC5A10, SLC47A2, TRIM16L, ALDH3A1, ALDH3A2, EPN2, FOXO3B, USP22, TBC1D28, CDRT15L2, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, TVP23B, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, ZNF286B, RNF112, SPECC1, ULK2) 0.128529679781142 57 0.12915482442278 0.623734910108616 2522 0.177716396978526 2 2 0 -7.56375305161021 LTS-036 chr17 21087672 21194769 107098 * c(NATD1, DHRS7B, MAP2K3, TMEM11) 0.379 1 NA 0.575302252710302 71 0.129658076884583 2 2 0 -5.94274301036697 LTS-036 chr17 21194770 21318663 123894 * c(KCNJ12, MAP2K3) 0.373246632769403 79 0.0868068997537383 0.661696757296028 168 0.161451649599052 2 1 1 -6.7615618341886 LTS-036 chr17 21318664 21318698 35 * KCNJ12 0.313 1 NA 0.742 1 NA NA NA NA NA LTS-036 chr17 21318699 22066835 748137 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.272531389587496 56 0.112690633577525 0.686948871349481 286 0.153045212960609 2 1 1 -7.30981357298796 LTS-036 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-036 chr17 25620838 25957334 336497 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.33 1 NA 0.621714707493118 285 0.117087330000103 2 2 0 -6.04628814768171 LTS-036 chr17 25957335 27959903 2002569 * c(SPAG5-AS1, MIR4523, MIR451B, MIR4732, MIR4723, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CRYBA1, TMEM199, PROCA1, DHRS13, LYRM9, ALDOC, SARM1, FLOT2, PPY2P, PYY2, POLDIP2, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NEK8, GIT1, LGALS9, MYO18A, MIR144, NOS2, PIPOX, NLK, FAM222B, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, NA NA NA NA NA NA NA NA NA LTS-036 FOXN1, CORO6, SSH2, TP53I13, IFT20, SLC13A2, UNC119, TIAF1, PIGS, TRAF4, KIAA0100) 0.111020462838758 34 0.132943851817921 0.644363070821935 3879 0.159184586563019 2 2 0 -7.25576875249737 LTS-036 NA NA NA NA LTS-036 chr17 27959904 27963280 3377 * SSH2 NA 0 NA 0.724078457472704 8 0.124306002038748 2 NA NA -5.76442529914359 LTS-036 chr17 27963281 28029938 66658 * SSH2 0.204 1 NA 0.623300115637574 61 0.258082286619339 2 2 0 -5.77600847644231 LTS-036 chr17 28029939 30380381 2350443 * c(MIR365B, MIR3184, MIR4724, MIR4733, MIR4725, LRRC37B, CPD, LRRC37BP1, EVI2A, EVI2B, SUZ12, TBC1D29, EFCAB5, TMIGD1, MIR193A, SUZ12P1, NF1, MIR423, OMG, DPRXP4, CRLF3, COPRS, ADAP2, UTP6, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, TEFM, ATAD5, NSRP1, RNF135, RAB11FIP4, SSH2, GOSR1) 0.221358547508185 44 0.0506524607092145 0.6163773512951 2466 0.169352927866344 2 2 0 -8.86512194776597 LTS-036 chr17 30380382 30668325 287944 * c(LRRC37B, RHBDL3, ARGFXP2, RHOT1, C17orf75) 0 1 NA 0.595439226365686 231 0.121763265205986 2 2 0 -6.13826162274731 LTS-036 chr17 30668326 32906432 2238107 * c(AA06, SPACA3, TMEM98, ASIC2, C17orf102, MYO1D, PSMD11, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, MIR632, ZNF207, CDK5R1) 0.150348450613078 21 0.131791628464532 0.610000966238195 1022 0.144652242616626 2 2 0 -8.0544739423597 LTS-036 chr17 32906433 32907940 1508 * TMEM132E NA 0 NA 0.963 1 NA NA NA NA NA LTS-036 chr17 32907941 34433730 1525790 * c(SLFN12L, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, ZNF830, SLFN11, RASL10B) 0.160655235470577 40 0.0816166736044567 0.77391443578711 2253 0.200509641762449 2 2 0 -6.89589012628136 LTS-036 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.074 1 NA NA NA NA NA LTS-036 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.429348708332694 39 0.449280122952142 1 NA NA -5.76572022807017 LTS-036 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.682 1 NA NA NA NA NA LTS-036 chr17 34842415 36214044 1371630 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, LHX1, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.139893806473632 22 0.0531769080502388 0.799718983137248 1536 0.215520139319296 2 2 0 -6.94190061837616 LTS-036 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.354 1 NA NA NA NA NA LTS-036 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) 0.234643675058515 3 0.0175783958312469 0.551077105333595 78 0.36551041248966 1 1 0 -7.1036640247577 LTS-036 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.677 1 NA NA NA NA NA LTS-036 chr17 36421727 37690692 1268966 * c(LOC100131347, C17orf96, LINC00672, MIR4726, MIR4734, MIR4727, CISD3, SOCS7, LRRC37A11P, STAC2, C17orf98, ARL5C, LASP1, MLLT6, LOC440434, GPR179, FBXO47, CDK12, MED1, CWC25, PSMB3, PLXDC1, ARHGAP23, RPL19, SNORA21, PCGF2, CACNB1, SRCIN1, PIP4K2B, MRPL45, FBXL20, RPL23) 0.126818646249889 49 0.0692541656204326 0.839481890802874 2343 0.214948240111554 3 3 0 -7.1352201174225 LTS-036 chr17 37690693 38028550 337858 * c(MIR4728, STARD3, ZPBP2, ERBB2, IKZF3, GRB7, NEUROD2, CDK12, PNMT, PPP1R1B, MIEN1, TCAP, PGAP3) 0.0762585673496598 14 0.032074860924043 1.57420782221578 786 0.372035711410204 5 5 0 -6.76443218802478 LTS-036 chr17 38028551 38028634 84 * ZPBP2 0.105 1 NA 0.282 1 NA NA NA NA NA LTS-036 chr17 38028635 38064442 35808 * c(ZPBP2, GSDMB) 0.14255703062544 4 0.027439327008268 1.11978277788425 71 0.383843288885627 2 2 0 -6.76200296076487 LTS-036 chr17 38064443 38064469 27 * GSDMB 0.15 1 NA 0.457 1 NA NA NA NA NA LTS-036 chr17 38064470 38545193 480724 * c(LRRC3C, SNORD124, GJD3, CSF3, WIPF2, CASC3, GSDMA, MSL1, RAPGEFL1, GSDMB, PSMD3, RARA, THRA, TOP2A, ORMDL3, NR1D1, MED24, CDC6) 0.182244407998907 7 0.0561825256683623 0.642050790579741 1293 0.152952764277582 2 2 0 -7.16426276313185 LTS-036 chr17 38545194 38782698 237505 * c(CCR7, IGFBP4, RARA, TOP2A, TNS4) 0.217 1 NA 0.633871760382324 423 0.138335360100617 2 2 0 -5.87376851005703 LTS-036 chr17 38782699 39186382 403684 * c(KRT222, KRT40, KRT25, TMEM99, KRT28, KRT24, KRT23, KRT27, KRT26, KRT10, KRT12, KRT39, KRT20, SMARCE1, KRTAP1-4, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP3-3) 0.207512282791414 61 0.0754938458751925 0.607561020756508 992 0.165247033856755 2 2 0 -7.38006489884571 LTS-036 chr17 39186383 39190758 4376 * KRTAP1-3 0 1 NA 0.680085106104857 15 0.206988221427027 2 2 0 -5.76457533133101 LTS-036 chr17 39190759 39240439 49681 * c(KRTAP2-2, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP2-4) 0.0971892494092101 4 0.122031416719903 0.567297373962565 74 0.142593210160434 2 2 0 -6.89314162076874 LTS-036 chr17 39240440 39240504 65 * KRTAP4-7 0.161 1 NA 0.934 1 NA NA NA NA NA LTS-036 chr17 39240505 39406713 166209 * c(KRTAP4-9, KRTAP4-7, KRTAP4-11, KRTAP4-8, KRTAP9-1, KRTAP4-6, KRTAP4-12, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2) 0.188990301249812 19 0.0891418148676295 0.710297424383553 251 0.248807050796187 2 2 0 -6.89245633616842 LTS-036 chr17 39406714 39458476 51763 * c(KRTAP9-7, KRTAP9-6, KRTAP29-1, KRTAP9-9, KRTAP9-4) 0 1 NA 0.557493706312289 52 0.371279206081863 1 1 0 -5.77301708204442 LTS-036 chr17 39458477 39596538 138062 * c(KRTAP16-1, LOC100505782, KRTAP29-1, KRT31, KRT33A, KRT33B, KRT34, KRTAP17-1, KRT38, KRT37) 0.0150962597458015 13 0.0527439387695219 0.684757806258074 313 0.189262505364263 4 4 0 -8.31267658314135 LTS-036 chr17 39596539 39635194 38656 * c(KRT32, KRT35, KRT38) 0.304 1 NA 0.639127902977106 79 0.0956998767345638 2 2 0 -5.79716479693509 LTS-036 chr17 39635195 40913264 1278070 * c(RAMP2-AS1, MIR5010, EIF1, RAMP2, P3H4, NT5C3B, CNP, LINC00974, FAM134C, ZNF385C, EZH1, KCNH4, GAST, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, PSMC3IP, HCRT, KLHL10, HSD17B1, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, GHDC, CNTNAP1, KRT36, HAP1, HSPB9) 0.156931794310009 53 0.0930893651197788 0.649972696243863 3222 0.173510467912654 2 2 0 -6.97908432901974 LTS-036 chr17 40913265 41197274 284010 * c(RAMP2-AS1, PTGES3L, PTGES3L-AARSD1, PSME3, RAMP2, VAT1, CNTD1, RUNDC1, G6PC, COA3, AOC2, IFI35, LINC00671, RPL27, WNK4, BRCA1, AARSD1, RND2, VPS25, AOC3, BECN1, AOC4P) 0 1 NA 0.668983867448537 824 0.162344508332929 2 2 0 -5.79449457433314 LTS-036 chr17 41197275 41361960 164686 * c(NBR2, NBR1, BRCA1) 0.00791747853853756 10 0.0655425222448924 0.652776336014683 324 0.251944493446032 4 4 0 -8.01252605775126 LTS-036 chr17 41361961 41465877 103917 * c(LINC00910, LINC00854, TMEM106A, NBR1) 0.414 1 NA 0.652507222792355 73 0.130195703588393 2 2 0 -5.79627415860818 LTS-036 chr17 41465878 43319770 1853893 * c(LINC00910, HDAC5, MIR2117, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, ARL4D, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, G6PC3, ASB16, EFTUD2) 0.18602535644728 70 0.0976062398304034 0.660799656381834 3202 0.224957973583961 2 2 0 -6.99015893046867 LTS-036 chr17 43319771 43364016 44246 * c(MAP3K14-AS1, SPATA32, FMNL1, MAP3K14) 0 1 NA 0.627792069725927 173 0.161801938972631 2 2 0 -5.78200942972755 LTS-036 chr17 43364017 44336514 972498 * MAP3K14 0.00211779021693358 47 0.0338578953389126 0.669830755361575 769 0.223886753150058 3 3 0 -11.1848777109352 LTS-036 chr17 44336515 44336594 80 * character(0) 0.015 1 NA 0.013 1 NA NA NA NA NA LTS-036 chr17 44336595 44782233 445639 * character(0) 0.0646439713524254 2 0.17819090885901 0.309610644597999 75 0.153872765972761 1 1 0 -8.53488894631739 LTS-036 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.649 1 NA NA NA NA NA LTS-036 chr17 44788332 45196190 407859 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0 3 0 0.645924191286495 219 0.170709912543796 0 0 0 -Inf LTS-036 chr17 45196191 45214473 18283 * CDC27 0.247 1 NA 0.638404691600701 67 0.160296301004685 2 2 0 -5.77006746197304 LTS-036 chr17 45214474 45822579 608106 * c(EFCAB13, TBX21, ITGB3, KPNB1, MYL4, MRPL45P2, NPEPPS, TBKBP1, CDC27) 0.266462044749015 18 0.0860917772940428 0.637529742972794 768 0.160545328286883 2 1 1 -7.88122738748078 LTS-036 chr17 45822580 45822775 196 * TBX21 NA 0 NA 0.687772935501115 5 0.0255695130966547 2 NA NA -5.76470634443043 LTS-036 chr17 45822776 45885708 62933 * c(OSBPL7, TBX21) NA 0 NA 0.822 1 NA NA NA NA NA LTS-036 chr17 45885709 45888251 2543 * OSBPL7 0 1 NA 0.825478973439502 29 0.275069592627352 2 2 0 -5.76481553515924 LTS-036 chr17 45888252 46214745 326494 * c(CBX1, OSBPL7, MRPL10, SNX11, MIR152, NFE2L1, COPZ2, PNPO, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2) 0.00169012311177604 15 0.0030441200151549 0.779040216689613 706 0.188019195811734 20 20 0 -19.41761177253 LTS-036 chr17 46214746 46233768 19023 * SKAP1 NA 0 NA 2.335 1 NA NA NA NA NA LTS-036 chr17 46233769 46669864 436096 * c(MIR1203, HOXB-AS1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB-AS3, MIR10A, SKAP1) 0 4 0 2.55521307516355 368 2.84404405614516 0 0 0 -Inf LTS-036 chr17 46669865 46670551 687 * c(HOXB5, HOXB-AS3) NA 0 NA 0.643 1 NA NA NA NA NA LTS-036 chr17 46670552 47373417 702866 * c(MIR3185, CALCOCO2, HOXB13, IGF2BP1, SNF8, FLJ40194, B4GALNT2, PHOSPHO1, ZNF652, GIP, GNGT2, TTLL6, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, HOXB-AS3, MIR196A1, ABI3, ATP5G1, UBE2Z, PRAC1) 0 11 0 0.626006127596741 1206 0.1719322295782 0 0 0 -Inf LTS-036 chr17 47373418 47482033 108616 * c(ZNF652, PHB) 0.152 1 NA 0.636906168115678 113 0.14250046132957 2 2 0 -5.80841063462829 LTS-036 chr17 47482034 48770517 1288484 * c(SLC35B1, CHAD, KAT7, NXPH3, COL1A1, EME1, TMEM92, DLX3, DLX4, SAMD14, CACNA1G-AS1, TAC4, LOC284080, ITGA3, HILS1, NGFR, MRPL27, PDK2, PHB, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PPP1R9B, ABCC3, CACNA1G) 0.153323910639408 71 0.0936826957602601 0.650462041497437 2839 0.166665690233382 2 2 0 -6.98951066849157 LTS-036 chr17 48770518 48770959 442 * ANKRD40 0 1 NA 0.666924922849005 11 0.171682476471167 2 2 0 -5.76445598505781 LTS-036 chr17 48770960 48940972 170013 * c(TOB1, WFIKKN2, LUC7L3, LINC00483, ANKRD40) 0.0851227908029715 10 0.100383984999822 0.631997036389316 384 0.159267496486461 2 2 0 -6.98497006798411 LTS-036 chr17 48940973 56544395 7603423 * c(TOM1L1, MIR3614, C17orf112, TSPOAP1-AS1, MIR4736, TOB1, HSF5, OR4D2, MSI2, COX11, DYNLL2, ANKFN1, MMD, MTVR2, STXBP4, OR4D1, HLF, C17orf67, RNF126P1, TOB1-AS1, LPO, CUEDC1, MIR142, MPO, NME1, NME2, UTP18, MRPS23, MBTD1, RNF43, MKS1, TMEM100, MSX2P1, CA10, PCTP, SCPEP1, SRSF1, NME1-NME2, SUPT4H1, TRIM25, VEZF1, COIL, AKAP1, EPX, KIF2B, DGKE, SPAG9, NOG, TSPOAP1) 0.109522159275262 47 0.0877282248943191 0.823499591105707 2604 0.22363722209247 2 2 0 -8.20944333362226 LTS-036 chr17 56544396 56557234 12839 * HSF5 NA 0 NA 1.116 1 NA NA NA NA NA LTS-036 chr17 56557235 62487106 5929872 * c(MIR4729, MIR4737, DCAF7, APPBP2, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, C17orf64, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, CYB561, MARCH10, ACE, ERN1, PPM1E, TANC2, GH1, GH2, MILR1, C17orf47, GDPD1, ICAM2, METTL2A, NACA2, SKA2, YPEL2, C17orf82, MIR21, MIR301A, MAP3K3, TBC1D3P2, TRIM37, RNFT1, TUBD1, TACO1, PTRH2, PECAM1, SEPT4, BCAS3, SMG8, PRR11, TEX2, TEX14, CCDC47, PSMC5, INTS2, RAD51C, RPS6KB1, NA NA NA NA NA NA NA NA NA LTS-036 SCN4A, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SCARNA20, SNORA50C, TBX2, SNORD104, LOC729683, CA4, MIR454, DHX40, LIMD2, KCNH6, VMP1, BRIP1, USP32, PPM1D, MTMR4, STRADA, PRR29, TBX4, CD79B, MRC2, MED13) 0.0807997578841943 85 0.0594006880153309 1.19838383399355 5137 0.340844105820655 4 4 0 -6.75783586252139 LTS-036 NA NA NA NA LTS-036 chr17 62487107 62488777 1671 * POLG2 NA 0 NA 1.51 1 NA NA NA NA NA LTS-036 chr17 62488778 67149731 4660954 * c(SNORA38B, LINC00674, MIR4524A, MIR3064, MIR5047, MIR4524B, ABCA10, ABCA9, ABCA8, GNA13, POLG2, LOC146880, DDX5, CEP112, AMZ2P1, BPTF, ARSG, ABCA6, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PRKCA, PSMD12, SMURF2, MIR634, MIR635, CACNG1, AXIN2, RGS9, CEP95, SLC16A6, HELZ) 0.0593908113650645 40 0.0509549260344816 1.35485342634251 2853 0.316256092604656 5 5 0 -6.99889026785913 LTS-036 chr17 67149732 67149939 208 * ABCA10 NA 0 NA 1.562 1 NA NA NA NA NA LTS-036 chr17 67149940 72743120 5593181 * c(CD300LD, LINC00673, ABCA10, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, ABCA5, CDC42EP4, LINC00469, RAB37, CD300E, GPR142, KCNJ2, KCNJ16, BTBD17, KCNJ2-AS1, LINC00511, LOC400620, SDK2, C17orf80, GPRC5C, MAP2K6, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, COG1, TTYH2) 0.0610402192003507 80 0.046733312868291 1.44347668465343 2375 0.407765277142738 5 5 0 -6.77257740543104 LTS-036 chr17 72743121 72764883 21763 * c(MIR3615, RAB37, SLC9A3R1) 0.129 1 NA 1.41350678473963 49 0.352674118718124 5 5 0 -5.76470149197321 LTS-036 chr17 72764884 73780845 1015962 * c(SMIM6, LOC100287042, MIR3678, MIR4738, ATP5H, USH1G, FDXR, GGA3, KCTD2, GALK1, NAT9, FADS6, HID1, TSEN54, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, MRPL58, OTOP3, ITGB4, LLGL2, MRPS7, HN1, TMEM104, MIF4GD, CASKIN2, SLC25A19, SMIM5, SUMO2, ARMC7, NUP85, MYO15B, SLC16A5, OTOP2, SLC9A3R1, RECQL5, TMEM94) 0.0948502984543648 81 0.0695534766284987 1.40272106912038 2494 0.336695193377029 5 5 0 -6.83156409693283 LTS-036 chr17 73780846 76970879 3190034 * c(TNRC6C-AS1, C17orf99, MIR4316, RNF157-AS1, SNHG16, LOC100507351, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, METTL23, AFMID, MGAT5B, TMC8, AANAT, TRIM65, UNC13D, EVPL, FOXJ1, JMJD6, EXOC7, WBP2, UBALD2, TMEM235, BIRC5, ZACN, LGALS3BP, FLJ45079, MXRA7, ACOX1, ST6GALNAC1, PRPSAP1, USP36, TNRC6C, UBE2O, SEC14L1, SRSF2, MRPL38, SNHG20, SRP68, SCARNA16, SNORD1A, SNORD1B, NA NA NA NA NA NA NA NA NA LTS-036 SNORD1C, MIR636, TIMP2, TK1, PRCD, MFSD11, RHBDF2, QRICH2, FBF1, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SYNGR2, CYTH1, PGS1) 0.0953301762392803 95 0.0593534632066644 1.00409540862116 4555 0.228389102579651 3 3 0 -6.78303697041071 LTS-036 NA NA NA NA LTS-036 chr17 76970880 77039835 68956 * c(C1QTNF1-AS1, C1QTNF1, CANT1, LGALS3BP) 0 1 NA 0.951901997707472 73 0.191050653909398 3 3 0 -5.7650184255832 LTS-036 chr17 77039836 78188963 1149128 * c(MIR4739, C1QTNF1, TBC1D16, RBFOX3, GAA, ENPP7, CCDC40, CBX8, SGSH, ENGASE, CARD14, CBX2, CBX4, EIF4A3) 0.00584816207657761 30 0.0418052958202748 1.03422155729986 967 0.251812222750395 4 4 0 -8.6264124139784 LTS-036 chr17 78188964 78215566 26603 * c(SLC26A11, SGSH) 0.141 1 NA 1.06402725294363 53 0.230294572201531 3 3 0 -5.76674973112418 LTS-036 chr17 78215567 80000805 1785239 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, MIR4740, MIR4730, ALYREF, BAIAP2, PPP1R27, SLC38A10, TEPSIN, SLC25A10, NOTUM, CENPX, LRRC45, CEP131, MYADML2, NPB, FSCN2, GCGR, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, ARHGDIA, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, RPTOR, BAHCC1, RNF213, PYCR1, PCYT2, RAC3, MRPL12, NA NA NA NA NA NA NA NA NA LTS-036 ACTG1, MIR657, ASPSCR1, CHMP6, FAAP100, TSPAN10, HGS, MAFG-AS1, AATK) 0.10361229540121 100 0.0580112589211453 1.01374395647063 3337 0.427787293259917 3 3 0 -6.74275158464007 LTS-036 NA NA NA NA LTS-036 chr17 80000806 80006580 5775 * RFNG NA 0 NA 0.693 1 NA NA NA NA NA LTS-036 chr17 80006581 80047641 41061 * c(FASN, GPS1, RFNG, DUS1L) 0.0716453901713396 8 0.104277017739152 0.638989415502177 355 0.124626738446068 2 2 0 -7.01820354996096 LTS-036 chr17 80047642 80051183 3542 * FASN 0.196 1 NA 0.586993212624634 37 0.140743275752946 2 2 0 -5.76866016498997 LTS-036 chr17 80051184 80146089 94906 * c(FASN, CCDC57) 0.209969207865596 26 0.0714361683872123 0.608577369965076 256 0.183184044344284 1 1 0 -6.88037938890516 LTS-036 chr17 80146090 80146185 96 * CCDC57 0 1 NA 0.811435327024903 3 0.18582877423406 2 2 0 -5.76443578564558 LTS-036 chr17 80146186 80363278 217093 * c(CSNK1D, UTS2R, CCDC57, TEX19, SECTM1, OGFOD3, SLC16A3, CD7) 0.143904423517198 3 0.134388739607652 0.605954399762174 268 0.114595380758983 2 2 0 -6.9987380067826 LTS-036 chr17 80363279 80363377 99 * OGFOD3 NA 0 NA 0.717 1 NA NA NA NA NA LTS-036 chr17 80363378 80386556 23179 * c(HEXDC, OGFOD3) 0 1 NA 1.22077161507047 38 0.4066024442289 4 4 0 -5.76441730111393 LTS-036 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.575 1 NA NA NA NA NA LTS-036 chr17 80391535 81083528 691994 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.131132957797014 22 0.114454597890845 0.620172884410847 884 0.140198644414145 2 2 0 -7.14850239634724 LTS-036 chr17 81083529 81083625 97 * character(0) NA 0 NA 0.454612845929074 3 0.117779454914684 1 NA NA -5.76441042840222 LTS-036 chr18 116845 122129 5285 * ROCK1P1 NA 0 NA 0.595316598213019 59 0.339249549976939 2 NA NA -5.76535330402819 LTS-036 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-036 chr18 122232 166819 44588 * USP14 0 1 NA 1.01578397979362 13 0.257103241759175 3 3 0 -5.76511673834551 LTS-036 chr18 166820 743436 576617 * c(CETN1, CLUL1, TYMSOS, ENOSF1, TYMS, YES1, COLEC12, USP14, THOC1) 0.0577905940333236 22 0.14529296422933 0.952080251745421 534 0.244434723883082 3 3 0 -6.79941828145475 LTS-036 chr18 743437 909561 166125 * c(ADCYAP1, YES1) 0.428 1 NA 0.908119268407401 57 0.297646129945745 3 3 0 -5.76995785281462 LTS-036 chr18 909562 2919734 2010173 * c(NDC80, ADCYAP1, SMCHD1, LINC00470, CBX3P2, METTL4, EMILIN2, LPIN2) 0.24993505878155 16 0.175073508371008 0.931732933452367 606 0.21296801593056 3 2 1 -6.98503475997393 LTS-036 chr18 2919735 2921444 1710 * LPIN2 0 1 NA 0.989896994445701 21 0.233788681546065 3 3 0 -5.76441492051278 LTS-036 chr18 2921445 3215230 293786 * c(LOC727896, MYOM1, LPIN2) 0.0522049807548666 13 0.174819173976265 0.985939313914195 300 0.471432400757346 3 3 0 -6.78787204756821 LTS-036 chr18 3215231 3447871 232641 * c(MYL12B, MYL12A, TGIF1, MYOM1) 0.39 1 NA 0.91845000075377 57 0.178717203907265 3 3 0 -5.77955441871428 LTS-036 chr18 3447872 3582173 134302 * c(TGIF1, DLGAP1) 0.349978237663228 2 0.0410121933088197 0.966804592859769 254 0.177776736875322 3 2 1 -6.73566369818328 LTS-036 chr18 3582174 3582267 94 * DLGAP1 NA 0 NA 1.012 1 NA NA NA NA NA LTS-036 chr18 3582268 6928422 3346155 * c(LINC01387, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LINC00667, LINC00668, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.370818992002863 17 0.0629660272546656 1.03814490587761 787 0.251925134076826 3 2 1 -6.90790364730727 LTS-036 chr18 6928423 6947143 18721 * c(LAMA1, LINC00668) 0 1 NA 1.08148167088184 27 0.216342854675699 3 3 0 -5.76702752571004 LTS-036 chr18 6947144 8546051 1598908 * c(LOC100192426, LAMA1, LRRC30, PTPRM) 0.173934844505643 15 0.153151963126575 1.08402529159337 586 0.294344506668518 3 3 0 -6.97509134943256 LTS-036 chr18 8546052 8609754 63703 * RAB12 NA 0 NA 0.968 1 NA NA NA NA NA LTS-036 chr18 8609755 8706235 96481 * RAB12 0 1 NA 0.972047192418338 39 0.150284844255685 3 3 0 -5.76442281901361 LTS-036 chr18 8706236 8783835 77600 * MTCL1 0.368 1 NA 0.864374421314688 31 0.180313013384223 3 3 0 -5.78483236347669 LTS-036 chr18 8783836 15004191 6220356 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.282336678766601 85 0.137665731034999 0.983413205597074 3284 0.242467013381512 3 2 1 -6.89107595610076 LTS-036 chr18 15004192 15006193 2002 * character(0) NA 0 NA 1.07611735719852 27 0.404540226518692 3 NA NA -5.76448274392608 LTS-036 chr18 18529727 18529880 154 * ROCK1 0.407 1 NA 0.892000249642343 6 0.165888818188569 3 3 0 -5.76443606300753 LTS-036 chr18 18529881 24128203 5598323 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, KCTD1, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, TAF4B, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.251358737710467 28 0.144555782792057 0.971253280499213 2993 0.233170988001967 3 2 1 -7.01444607546229 LTS-036 chr18 24128204 24180904 52701 * KCTD1 NA 0 NA 0.429 1 NA NA NA NA NA LTS-036 chr18 24180905 24524473 343569 * c(AQP4-AS1, KCTD1, AQP4, PCAT18, CHST9) 0 1 NA 0.493527167108919 148 0.154411831021712 1 1 0 -5.81103343887919 LTS-036 chr18 24524474 24603941 79468 * c(AQP4-AS1, CHST9) NA 0 NA 0.937 1 NA NA NA NA NA LTS-036 chr18 24603942 29237860 4633919 * c(CDH2, MIR302F, DSG2-AS1, DSG4, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, TTR, CHST9, B4GALT6) 0.217569180596037 30 0.163873181272074 1.00976651603552 1132 0.226412426267834 3 3 0 -7.07134423874191 LTS-036 chr18 29237861 29409319 171459 * c(SLC25A52, TRAPPC8, B4GALT6) 0 1 NA 0.912997441209666 29 0.183968265361444 3 3 0 -5.77718430476356 LTS-036 chr18 29409320 29972964 563645 * c(TRAPPC8, MEP1B, RNF138, RNF125, GAREM1) 0.0621750092350757 14 0.127157361192715 0.939876850844786 612 0.278814429829103 3 3 0 -6.8066840638514 LTS-036 chr18 29972965 30349691 376727 * c(WBP11P1, KLHL14, GAREM1) 0.322 1 NA 1.03480883531046 62 0.304011847788834 3 3 0 -5.77330226932063 LTS-036 chr18 30349692 34839215 4489524 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, TPGS2, CCDC178, MIR187, MOCOS, RPRD1A, ELP2, CELF4, KIAA1328, KLHL14, ZNF24, FHOD3, ASXL3, C18orf21, ZNF397, NOL4) 0.261876304025798 56 0.142326165330421 1.02871502441683 2217 0.32913670708325 3 2 1 -7.04031068449261 LTS-036 chr18 34839216 34844628 5413 * CELF4 NA 0 NA 0.659 1 NA NA NA NA NA LTS-036 chr18 34844629 42529996 7685368 * c(MIR4318, MIR5583-2, MIR5583-1, SETBP1, LINC00907, PIK3C3, CELF4, RIT2, KC6, MIR924HG, SYT4) 0.230797831700707 10 0.145613224368912 0.940819464577469 490 0.240716374611564 3 2 1 -7.22134141522591 LTS-036 chr18 42529997 42532606 2610 * SETBP1 0 1 NA 1.03768351400203 55 0.209087105074458 3 3 0 -5.76455277919723 LTS-036 chr18 42532607 43595802 1063196 * c(MIR4319, SETBP1, SIGLEC15, EPG5, SLC14A1, SLC14A2, PSTPIP2) 0.0194560641524049 16 0.0966260834350643 0.968955085223611 859 0.25700585074788 3 3 0 -7.1724994765596 LTS-036 chr18 43595803 43652203 56401 * PSTPIP2 0.325 1 NA 0.866782812773536 23 0.200084952313492 3 3 0 -5.77592753955181 LTS-036 chr18 43652204 45555829 1903626 * c(TCEB3CL2, HAUS1, LOXHD1, C18orf25, TCEB3C, ZBTB7C, ST8SIA5, SMAD2, RNF165, ATP5A1, IER3IP1, TCEB3B, SKOR2, KATNAL2, HDHD2, PSTPIP2, PIAS2) 0.330652800467853 14 0.0950041352483444 0.969040554521885 1208 0.215183662689064 3 2 1 -6.76563211125009 LTS-036 chr18 45555830 45688841 133012 * ZBTB7C 0 1 NA 0.938080381315652 43 0.209801496119752 3 3 0 -5.76699873313105 LTS-036 chr18 45688842 46389069 700228 * c(MIR4743, ZBTB7C, CTIF) 0.054951652056227 9 0.129448295126321 0.999152237683774 163 0.247895169827516 3 3 0 -6.82662453978693 LTS-036 chr18 46389070 46474746 85677 * c(SMAD7, CTIF) 0.369 1 NA 0.919477791176663 69 0.167586485669424 3 3 0 -5.77052366899793 LTS-036 chr18 46474747 77473127 30998381 * c(SNORD58C, LOC100131655, LINC01630, MIR1539, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RPL17-C18orf32, MIR4529, MIR3591, MIR4744, MIR5011, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, MALT1, POLI, ALPK2, FAM69C, STARD6, CCBE1, CBLN2, CYB5A, C18orf54, DCC, FBXO15, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, GALR1, RTTN, SNORD58B, SNORD58A, SALL3, CDH20, NA NA NA NA NA NA NA NA NA LTS-036 DYNAP, BOD1L2, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, RAX, CXXC1, LOC339298, CPLX4, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MYO5B, NARS, NFATC1, C18orf32, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, DYM, ZCCHC2, ZNF532, ELAC1, ZNF407, CNDP2, MAPK4, KIAA1468, RAB27B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 BCL2, RPL17, SERPINB3, SERPINB4, LOC643542, C18orf63, SCARNA17, SNORA37, TCF4, ZNF236, CCDC102B, CCDC68, NETO1, MRO, CNDP1, SERPINB7, TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, CTDP1, DSEL, SOCS6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516) 0.309178324784802 289 0.10052476892123 0.966501666508725 10106 0.433250382208063 3 2 1 -6.84928105608706 LTS-036 NA NA NA NA LTS-036 chr18 77473128 77659561 186434 * c(KCNG2, CTDP1) 0.341 1 NA 0.966906935036729 87 0.215139603942905 3 3 0 -5.76454704473538 LTS-036 chr18 77659562 77926862 267301 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, HSBP1L1, RBFA, PQLC1, PARD6G) 0.0881605349885735 9 0.155995548369532 0.983201415416935 443 0.53190553734551 3 3 0 -6.74026569958096 LTS-036 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.780281080404122 17 0.155414554735164 2 NA NA -5.7786345750887 LTS-036 chr19 107416 334474 227059 * c(LINC01002, MIER2, OR4F17, PLPP2) 0.162 1 NA 0.679786151100185 93 0.148659879257299 2 2 0 -5.78126707507228 LTS-036 chr19 334475 1925864 1591390 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, NA NA NA NA NA NA NA NA NA LTS-036 REXO1, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, MADCAM1, ABHD17A, KLF16, KISS1R, MUM1, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.195780444228406 116 0.082501655973567 0.633351844370113 3740 0.166755331590393 2 2 0 -7.45386415603534 LTS-036 NA NA NA NA LTS-036 chr19 1925865 2129175 203311 * c(IZUMO4, SCAMP4, MOB3A, CSNK1G2, CSNK1G2-AS1, MKNK2, BTBD2, AP3D1) 0.177812966501459 14 0.0593540318672717 0.822830388388332 375 0.172925828741658 2 2 0 -7.0162680021853 LTS-036 chr19 2129176 2129320 145 * AP3D1 NA 0 NA 0.537 1 NA NA NA NA NA LTS-036 chr19 2129321 4558450 2429130 * c(C19orf71, MIR1227, CHAF1A, MIR4321, MIR4746, EBI3, HMG20B, SEMA6B, ZNF554, MRPL54, LRG1, TMIGD2, ZNF57, JSRP1, MFSD12, GIPC3, DIRAS1, ZNF555, DAPK3, AES, ANKRD24, EEF2, ZFR2, PIP5K1C, TIMM13, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, SLC39A3, TMPRSS9, C19orf35, CACTIN-AS1, MATK, PLIN5, GADD45B, NFIC, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, PLEKHJ1, STAP2, CCDC94, MAP2K2, NCLN, SPPL2B, NA NA NA NA NA NA NA NA NA LTS-036 SHD, ZNF77, CACTIN, CELF5, SGTA, LINGO3, SH3GL1, TBXA2R, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, ZNF556, UBXN6, SF3A2, DOHH, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, ATCAY, S1PR4, AP3D1, APBA3) 0.213781794049726 114 0.0612589521164678 0.642807775667084 4365 0.202674646359776 2 2 0 -7.84274535635541 LTS-036 NA NA NA NA LTS-036 chr19 4558451 4651890 93440 * c(SEMA6B, TNFAIP8L1) NA 0 NA 0.425 1 NA NA NA NA NA LTS-036 chr19 4651891 4723912 72022 * c(DPP9-AS1, TNFAIP8L1, MYDGF, DPP9) 0.390424980714773 3 0.0380394532032205 0.449502458447285 178 0.0966505906139837 2 1 1 -7.61252372183399 LTS-036 chr19 4723913 4769253 45341 * MIR7-3HG NA 0 NA 0.807 1 NA NA NA NA NA LTS-036 chr19 4769254 4929359 160106 * c(PLIN3, TICAM1, MIR7-3HG, UHRF1, MIR7-3, FEM1A, ARRDC5) 0.156916360452792 4 0.0302544762528346 0.762651271056658 176 0.17220257541779 2 2 0 -6.88003377384159 LTS-036 chr19 4929360 6828040 1898681 * c(LOC100128568, SH2D3A, MIR3940, MIR4747, TUBB4A, ACER1, C19orf70, NDUFA11, ZNRF4, PRR22, KDM4B, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, SLC25A41, UHRF1, GTF2F1, HSD11B1L, VMAC, MLLT1, NRTN, PSPN, GPR108, DUS3L, PTPRS, RFX2, SAFB, C3, VAV1, SLC25A23, DENND1C, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, TNFSF14, TNFSF9, CRB3, TRIP10, LONP1, SAFB2, CD70) 0.190273165294546 56 0.108046977517418 0.644737719108012 2624 0.265757857862078 2 2 0 -7.02209941854343 LTS-036 chr19 6828041 6848220 20180 * VAV1 0 1 NA 0.636120275777631 62 0.246378192841788 2 2 0 -5.76722176654614 LTS-036 chr19 6848221 6955681 107461 * c(ADGRE1, ADGRE4P, VAV1) 0.242184332290712 4 0.0218536800867344 0.668417558455788 151 0.284348767285799 5 4 1 -7.20609326573616 LTS-036 chr19 6955682 6956991 1310 * ADGRE4P NA 0 NA 1.465 1 NA NA NA NA NA LTS-036 chr19 6956992 7935816 978825 * c(LOC100128573, PET100, CLEC4M, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, MCEMP1, FCER2, ARHGEF18, MBD3L5, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, CLEC4GP1, FLJ25758, RETN, XAB2, MCOLN1, CAMSAP3, MBD3L4, MBD3L3, STXBP2, ZNF557, PRR36, PEX11G) 0.186803141933977 29 0.107336781808773 2.06744543300991 1443 0.515802814372378 7 6 1 -6.73678283138191 LTS-036 chr19 7935817 7935907 91 * PRR36 NA 0 NA 1.851 1 NA NA NA NA NA LTS-036 chr19 7935908 8923329 987422 * c(RAB11B-AS1, TGFBR3L, MIR4999, TIMM44, ZNF558, ELAVL1, KANK3, ACTL9, OR2Z1, LYPLA2P2, CTXN1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RPS28, CCL25, SNAPC2, CERS4, LRRC8E, PRR36, ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B) 0.204326408037526 61 0.122932379564357 1.77279865440559 1601 0.45248505075537 6 5 1 -6.73395604303092 LTS-036 chr19 8923330 8923796 467 * ZNF558 NA 0 NA 2.128 1 NA NA NA NA NA LTS-036 chr19 8923797 9767417 843621 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, OR7D2, OR7E24, ZNF561-AS1, ZNF699, OR7G2, OR7G3, ZNF562, ZNF317, ZNF121, ZNF177, ZNF426, ZNF559, MBD3L1, ZNF561, MUC16) 0.146660368254656 30 0.154512436727431 1.99504976922492 1853 0.681491159039284 8 7 1 -6.75531529941186 LTS-036 chr19 9767418 9768655 1238 * ZNF562 NA 0 NA 2.583 1 NA NA NA NA NA LTS-036 chr19 9768656 9968139 199484 * c(ZNF846, PIN1, ZNF562, FBXL12, UBL5, ZNF812P, OLFM2) 0.238 1 NA 2.86205208441448 201 0.802608265073429 10 10 0 -5.76456979980181 LTS-036 chr19 9968140 9971478 3339 * OLFM2 NA 0 NA 1.79216322279415 15 0.272990057380432 6 NA NA -5.76442698019641 LTS-036 chr19 9971479 10046967 75489 * OLFM2 NA 0 NA 1.319 1 NA NA NA NA NA LTS-036 chr19 10046968 10070500 23533 * c(COL5A3, OLFM2) 0.423 1 NA 0.948751862547733 7 0.288561291665426 3 3 0 -5.76452904413309 LTS-036 chr19 10070501 11027513 957013 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, RAVER1, ILF3-AS1, DNM2, DNMT1, C19orf38, ICAM1, ICAM3, ICAM4, ILF3, C3P1, MIR199A1, P2RY11, COL5A3, RDH8, MRPL4, PDE4A, S1PR5, C19orf66, PPAN, SLC44A2, KRI1, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, QTRT1, ANGPTL6, ATG4D, EIF3G, S1PR2, KEAP1) 0.402413385469652 42 0.121118061349799 1.0051901455834 2371 0.360889105963389 3 2 1 -6.83708581002765 LTS-036 chr19 11027514 11113651 86138 * c(CARM1, SMARCA4, YIPF2, C19orf52) 0 1 NA 1.04294506059257 173 0.214434314288802 3 3 0 -5.76962955630395 LTS-036 chr19 11113652 11114111 460 * SMARCA4 0 1 NA 1.12949541927935 8 0.463753301875038 4 4 0 -5.76441981411542 LTS-036 chr19 11114112 11118476 4365 * SMARCA4 NA 0 NA 1.533 1 NA NA NA NA NA LTS-036 chr19 11118477 11354609 236133 * c(SPC24, KANK2, LDLR, ANGPTL8, DOCK6, SMARCA4) 0.0452389893058794 19 0.133385121521386 1.47970378419593 622 0.412034719527682 5 5 0 -6.75276003815359 LTS-036 chr19 11354610 11356269 1660 * DOCK6 NA 0 NA 1.192 1 NA NA NA NA NA LTS-036 chr19 11356270 11406952 50683 * c(TSPAN16, DOCK6) 0 3 0 1.0444075244297 43 0.380534295359339 0 0 0 -Inf LTS-036 chr19 11406953 11436221 29269 * c(TSPAN16, RAB3D) 0.473 1 NA 1.03483524634883 31 0.193498509343818 3 3 0 -5.76611891661288 LTS-036 chr19 11436222 11558275 122054 * c(CCDC151, SWSAP1, CCDC159, EPOR, TSPAN16, TMEM205, PRKCSH, RGL3, PLPPR2, RAB3D) 0.467896684259708 15 0.0331379511968349 1.07480527984831 423 0.22664172117447 4 2 2 -9.201850516578 LTS-036 chr19 11558276 11687195 128920 * c(ZNF653, CNN1, ELAVL3, ECSIT, ACP5, PRKCSH, ELOF1) 0 1 NA 1.0769812962688 229 0.265170772616664 3 3 0 -5.77545392366494 LTS-036 chr19 11687196 12502787 815592 * c(ZNF625-ZNF20, ZNF441, ZNF491, ZNF440, ZNF563, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, ZNF44, ACP5, ZNF823, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ZNF799, ZNF625, ZNF700, ZNF439) 0.0671547394230262 13 0.170557494629697 1.00808144849662 1325 0.351575595339669 3 3 0 -6.7674272940771 LTS-036 chr19 12502788 12691335 188548 * c(ZNF443, ZNF564, ZNF709, ZNF490, ZNF799) 0.463 1 NA 0.980107509107879 265 0.178312610702401 3 3 0 -5.76453964558233 LTS-036 chr19 12691336 13876884 1185549 * c(RNASEH2A, KLF1, NACC1, ZNF791, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, HOOK2, TNPO2, JUNB, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, TRMT1, ZNF490, RAD23A, PRDX2, CACNA1A, C19orf43, CALR, CCDC130, RTBDN, MRI1, FBXW9, WDR83, STX10, GADD45GIP1, IER2) 0.414759782705407 28 0.0930403849278002 1.03616963227621 1949 0.226169794763196 3 2 1 -7.04181236889191 LTS-036 chr19 13876885 13876983 99 * MRI1 NA 0 NA 0.949 1 NA NA NA NA NA LTS-036 chr19 13876984 14048587 171604 * c(LOC284454, C19orf53, NANOS3, MIR181C, CC2D1A, MIR181D, ZSWIM4, C19orf57, PODNL1, MRI1) 0.449100575480586 10 0.0595856992537266 0.869147167058111 413 0.200879432799914 2 1 1 -7.45481347130529 LTS-036 chr19 14048588 14048751 164 * PODNL1 NA 0 NA 0.828718915354653 3 0.013856406460551 2 NA NA -5.77520939286108 LTS-036 chr19 14048752 14048960 209 * PODNL1 NA 0 NA 1.099 1 NA NA NA NA NA LTS-036 chr19 14048961 14083761 34801 * c(RFX1, PODNL1, DCAF15) 0 1 NA 1.06950526456394 121 0.171774975327492 3 3 0 -5.77056668610422 LTS-036 chr19 14083762 14910321 826560 * c(LOC100507373, DDX39A, GIPC1, MISP3, RLN3, ADGRL1, OR7C1, ADGRE2, DNAJB1, PALM3, CLEC17A, NDUFB7, PRKACA, ASF1B, PKN1, PTGER1, RFX1, C19orf67, MIR639, ZNF333, ADGRE3, SAMD1, IL27RA, TECR, ADGRE5) 0.313172517835254 20 0.199985788968801 1.04375169969716 1377 0.407015515948529 3 2 1 -6.77048003545413 LTS-036 chr19 14910322 14910440 119 * OR7C1 0 1 NA 1.25349956665552 5 0.595973741032271 4 4 0 -5.76441019380058 LTS-036 chr19 14910441 15121307 210867 * c(OR7A17, OR7C2, OR7A5, OR7C1, OR7A10, SLC1A6) 0.0894871183053885 9 0.198603737236852 1.12610008123827 158 0.332402621623553 4 4 0 -6.74280800876875 LTS-036 chr19 15121308 15124474 3167 * c(CCDC105, SLC1A6) 0.5 1 NA 0.988355759473547 19 0.283428487633722 3 3 0 -5.76441504744048 LTS-036 chr19 15124475 15235932 111458 * c(ILVBL, OR1I1, CCDC105, CASP14, SYDE1) 0.452074749580997 20 0.16810343776816 1.08575561161074 237 0.255233299037782 4 2 2 -6.84394473795772 LTS-036 chr19 15235933 15281386 45454 * c(ILVBL, NOTCH3) 0 1 NA 1.11296408039463 61 0.212015489433114 4 4 0 -5.77067701528604 LTS-036 chr19 15281387 15338802 57416 * c(NOTCH3, EPHX3) 0.000203541233441838 4 0.0035 1.11499569221767 168 0.271638709505049 20 20 0 -13.8661478248819 LTS-036 chr19 15338803 16437842 1099040 * c(MIR1470, AKAP8, KLF2, CYP4F8, PGLYRP2, CIB3, CYP4F22, LINC00661, OR10H4, LINC00905, BRD4, FAM32A, OR10H3, OR10H2, OR10H1, AKAP8L, OR10H5, CYP4F24P, CYP4F3, RAB8A, CYP4F11, WIZ, RASAL3, UCA1, CYP4F12, TPM4, EPHX3, HSH2D, CYP4F2, AP1M1) 0.277463026272081 44 0.187550228649247 1.20844013236785 1361 0.344245553548318 4 3 1 -6.73785221912104 LTS-036 chr19 16437843 16466428 28586 * c(KLF2, EPS15L1) NA 0 NA 1.927 1 NA NA NA NA NA LTS-036 chr19 16466429 17122630 656202 * c(CHERP, CALR3, SIN3B, CPAMD8, NWD1, EPS15L1, TMEM38A, SMIM7, SLC35E1, C19orf44, F2RL3, MED26) 0.288690357440204 30 0.174872041889156 1.34516015675372 1158 0.31614622107266 4 3 1 -6.76328414148985 LTS-036 chr19 17122631 17133028 10398 * CPAMD8 0 1 NA 1.74402820343534 7 0.65615082470565 6 6 0 -5.764410204115 LTS-036 chr19 17133029 17435887 302859 * c(ANKLE1, NR2F6, CPAMD8, BABAM1, MYO9B, USE1, ANO8, MRPL34, DDA1, ABHD8, OCEL1, USHBP1, HAUS8) 0.04661195549589 14 0.128320362314854 1.39508264996854 652 0.347803409501911 5 5 0 -6.75845974684683 LTS-036 chr19 17435888 17534351 98464 * c(ANO8, BST2, PLVAP, GTPBP3, MVB12A) 0.313 1 NA 1.34662231675654 265 0.298286892552665 4 4 0 -5.76965150746357 LTS-036 chr19 17534352 18327790 793439 * c(TMEM221, B3GNT3, IFI30, CCDC124, NXNL1, FAM129C, UNC13A, MAST3, FCHO1, PGLS, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, SLC27A1, KCNN1, PDE4C, PIK3R2, MAP1S, RAB3A, RPL18A, SLC5A5, COLGALT1, MPV17L2, MVB12A) 0.323651075059888 43 0.120803703932127 1.34930460385999 1788 0.311577686108489 4 3 1 -6.81912179510301 LTS-036 chr19 18327791 18328946 1156 * PDE4C NA 0 NA 0.79 1 NA NA NA NA NA LTS-036 chr19 18328947 20806893 2477947 * c(ZNF737, MEF2B, MIR1270, MIR3188, MIR3189, SUGP2, CERS1, COPE, LRRC25, NR2C2AP, COMP, NCAN, CILP2, SSBP4, ZNF626, CRTC1, MAU2, FKBP8, TMEM59L, LSM4, GDF1, SLC25A42, LINC00663, JUND, YJEFN3, HAPLN4, BORCS8-MEF2B, ZNF506, NDUFA13, GMIP, PDE4C, ISYNA1, TM6SF2, DDX49, GATAD2A, PGPEP1, TMEM161A, C19orf60, KLHL26, ZNF253, ATP13A1, SUGP1, UPF1, ZNF826P, LOC729966, BORCS8, UBA52, ZNF14, ZNF90, KXD1, PBX4, NA NA NA NA NA NA NA NA NA LTS-036 KIAA1683, ELL, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, CRLF1, ARMC6, ZNF101, HOMER3, GDF15) 0.317173759403686 89 0.134101893821286 0.762760696327405 3271 0.189430727513172 2 1 1 -7.04103157644851 LTS-036 NA NA NA NA LTS-036 chr19 20806894 20988951 182058 * ZNF626 NA 0 NA 0.742552300317528 37 0.113998524831086 2 NA NA -5.77525313531256 LTS-036 chr19 20988952 21106199 117248 * ZNF85 NA 0 NA 0.882 1 NA NA NA NA NA LTS-036 chr19 21106200 21120153 13954 * ZNF85 0 1 NA 1.04846271125928 9 0.576170571773479 3 3 0 -5.76454618697398 LTS-036 chr19 21120154 21948570 828417 * c(ZNF738, ZNF714, ZNF100, ZNF431, ZNF493, ZNF429, LINC00664, LOC641367, ZNF708, ZNF85, ZNF430) 0.0293364982189516 10 0.0945763066406052 0.842289812563364 388 0.269909682302436 3 3 0 -7.23767934563356 LTS-036 chr19 21948571 22153495 204925 * c(ZNF100, ZNF43, ZNF208) 0.284 1 NA 0.893446837825527 51 0.131938928236945 3 3 0 -5.81684887652183 LTS-036 chr19 22153496 24345092 2191597 * c(HAVCR1P1, ZNF730, ZNF729, ZNF257, ZNF98, ZNF681, ZNF676, ZNF675, ZNF728, RPSAP58, GOLGA2P9, ZNF724, ZNF492, ZNF726, ZNF91, ZNF99, ZNF208, ZNF254) 0.306298594012667 18 0.0490959112017694 0.919563250813551 686 0.234149288543902 3 2 1 -7.30342656185724 LTS-036 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.626391349139633 3 0.0952627944162883 2 NA NA -5.76444345919555 LTS-036 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.006 1 NA 2.14109667243612 55 0.439502427568249 8 8 0 -5.78214594880493 LTS-036 chr19 30097269 30313377 216109 * c(POP4, PLEKHF1, C19orf12, CCNE1) 0.241330990915042 6 0.102494390090385 2.12085260323016 191 0.420227812023843 9 7 2 -6.75620299721634 LTS-036 chr19 30313378 33072263 2758886 * c(THEG5, DPY19L3, ZNF507, LOC400684, TSHZ3, URI1, CCNE1, PDCD5, NA, ZNF536) 0.139765792471573 8 0.113716125254324 2.72137973656717 477 0.535614062005866 10 9 1 -6.73893934858406 LTS-036 chr19 33072264 33073059 796 * PDCD5 NA 0 NA 6.411 1 NA NA NA NA NA LTS-036 chr19 33073060 33324218 251159 * c(SLC7A9, RGS9BP, NUDT19, ANKRD27, PDCD5, TDRD12) 0 8 0 4.71028024514205 361 1.88466756433048 0 0 0 -Inf LTS-036 chr19 33324219 33333019 8801 * SLC7A9 NA 0 NA 3.181 1 NA NA NA NA NA LTS-036 chr19 33333020 34584299 1251280 * c(CEBPA, CEBPG, SLC7A9, WDR88, LRP3, PEPD, GPATCH1, SLC7A10, CHST8, KCTD15, CEBPA-AS1, CEP89, RHPN2, FAAP24) 0.0744297734017796 26 0.113817404374118 2.93707396418312 785 0.831470240611778 10 10 0 -6.79699507740129 LTS-036 chr19 34584300 34663466 79167 * LSM14A NA 0 NA 1.355 1 NA NA NA NA NA LTS-036 chr19 34663467 34925945 262479 * c(UBA2, LSM14A, GPI, PDCD2L, KIAA0355) 0.337513928548315 4 0.202603677163076 1.78270238599261 324 0.386921832718713 6 4 2 -6.73374154215421 LTS-036 chr19 34925946 34929488 3543 * UBA2 NA 0 NA 1.247 1 NA NA NA NA NA LTS-036 chr19 34929489 35176752 247264 * c(SCGB2B3P, UBA2, WTIP, SCGB2B2, ZNF302, SCGB1B2P) 0 3 0 1.30100835407071 203 0.278267264578533 0 0 0 -Inf LTS-036 chr19 35176753 35233027 56275 * c(ZNF181, ZNF302) 0.488 1 NA 1.09314583924937 53 0.148745330816694 3 3 0 -5.78458960671476 LTS-036 chr19 35233028 35450229 217202 * c(LINC00904, ZNF792, ZNF599, ZNF181, LOC400685, ZNF30) 0.4516364172786 9 0.0271052475444229 1.27362552172595 192 0.235773832617726 4 2 2 -9.12207343977369 LTS-036 chr19 35450230 35500919 50690 * c(ZNF792, GRAMD1A) 0 1 NA 1.35498195501002 65 0.202481370225662 5 5 0 -5.77109315025521 LTS-036 chr19 35500920 35642297 141378 * c(HPN-AS1, LGI4, HPN, FXYD1, FXYD3, FXYD7, GRAMD1A, SCN1B) 0.307506683900643 9 0.233732991062689 1.29972268913354 369 0.284797279140108 4 3 1 -6.73933174162648 LTS-036 chr19 35642298 35645877 3580 * c(FXYD7, FXYD5) 0.48 1 NA 1.36826939455643 17 0.283495136901956 5 5 0 -5.76460412962598 LTS-036 chr19 35645878 35719106 73229 * c(FAM187B, FXYD5) 0.385164113835572 9 0.158255156138574 1.29653182897425 83 0.227670960199431 4 2 2 -6.73523480296363 LTS-036 chr19 35719107 35719577 471 * FAM187B 0 1 NA 1.3193012222918 13 0.367622175749184 4 4 0 -5.76441989390621 LTS-036 chr19 35719578 36230767 511190 * c(LINC01531, TMEM147-AS1, MIR5196, UPK1A-AS1, TMEM147, UPK1A, COX6B1, FAM187B, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR1, FFAR3, FFAR2, SBSN, KRTDAP, MAG, ATP4A, LSR, HAMP, USF2, RBM42, IGFLR1, DMKN, CD22, KMT2B) 0.215376698953042 45 0.218277200741709 1.26330939263951 1327 0.313571505062439 4 3 1 -6.80452772268939 LTS-036 chr19 36230768 36237245 6478 * c(U2AF1L4, PSENEN, IGFLR1) 0.489 1 NA 1.24320759565232 61 0.231817393275691 4 4 0 -5.76441596819909 LTS-036 chr19 36237246 36515560 278315 * c(HCST, ARHGAP33, HSPB6, PROSER3, SYNE4, CLIP3, APLP1, NPHS1, PSENEN, LIN37, PRODH2, SDHAF1, TYROBP, LRFN3, KIRREL2, NFKBID, ALKBH6) 0.336604479239636 28 0.195672504036665 1.29651214084488 920 0.285644345056244 4 3 1 -6.77200843110933 LTS-036 chr19 36515561 36523293 7733 * CLIP3 0 1 NA 1.2572332256991 29 0.234334026467756 4 4 0 -5.764444607711 LTS-036 chr19 36523294 36685310 162017 * c(TBCB, COX7A1, ZNF565, THAP8, CLIP3, WDR62, POLR2I, OVOL3, CAPNS1) 0.0910361658727771 9 0.206627550061565 1.28809861382014 410 0.299103833081093 4 4 0 -6.73595333871637 LTS-036 chr19 36685311 36938398 253088 * c(LOC100134317, LINC00665, ZNF565, ZFP82, ZFP14, LOC644189, ZNF146, ZNF566) 0.484 1 NA 1.31462973907273 173 0.334064189006639 4 4 0 -5.77012567408733 LTS-036 chr19 36938399 37241391 302993 * c(ZNF567, ZNF260, ZNF850, ZNF529, LOC728752, ZNF382, ZNF566, ZNF461) 0.444227426400663 8 0.0555254124574634 1.3061588413486 504 0.279315418586605 4 2 2 -7.35953178016576 LTS-036 chr19 37241392 38699049 1457658 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF420, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZNF585A, ZFP30, SIPA1L3, ZNF345, ZNF790-AS1, LOC284412, HKR1, ZNF850, ZNF829, ZNF568, ZNF790, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.368042117820071 10 0.145614750473829 1.49786426416884 1667 0.294175017634121 5 3 2 -6.73512369046607 LTS-036 chr19 38699050 38701644 2595 * character(0) NA 0 NA 0.874 1 NA NA NA NA NA LTS-036 chr19 38701645 38959680 258036 * c(SPINT2, RASGRP4, FAM98C, GGN, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, DPF1, YIF1B, KCNK6, PPP1R14A) 0.375855529846708 22 0.0950707187226517 1.08355976172979 748 0.3951191960431 4 2 2 -6.75467355128022 LTS-036 chr19 38959681 38985308 25628 * RYR1 0 1 NA 1.10421957821385 87 0.201711371549689 4 4 0 -5.76894410579659 LTS-036 chr19 38985309 39367111 381803 * c(MAP4K1, RINL, CAPN12, ECH1, EIF3K, HNRNPL, LGALS4, LGALS7, RYR1, LGALS7B, ACTN4) 0.0404688093697931 32 0.135382135382203 1.13214540909385 949 0.288136383653265 4 4 0 -6.81300056031368 LTS-036 chr19 39367112 39402455 35344 * c(RINL, SIRT2, NFKBIB, CCER2) 0.388 1 NA 1.08534154061812 184 0.27546027007257 3 3 0 -5.76766938248692 LTS-036 chr19 39402456 40384193 981738 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, FBXO27, LGALS16, EID2, FBL, IFNL2, IFNL3, IFNL1, LGALS13, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS17A, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.369832727659758 38 0.136428673938239 1.11304283271269 1518 0.269358873962529 4 2 2 -6.82293757611116 LTS-036 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.464 1 NA NA NA NA NA LTS-036 chr19 40389650 40406019 16370 * FCGBP 0.330877842471565 3 0.0732279545893051 0.366046854468378 39 0.381613325362817 3 2 1 -6.84938965456038 LTS-036 chr19 40406020 40406033 14 * FCGBP NA 0 NA 1.783 1 NA NA NA NA NA LTS-036 chr19 40406034 42221607 1815574 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, CEACAM5, CEACAM7, CEACAM4, HNRNPUL1, EGLN2, C19orf47, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, ZNF780B, AKT2, CYP2G1P, PLD3, ZNF780A, C19orf54, CYP2S1, SERTAD3, SERTAD1, ZNF546, B3GNT8, MAP3K10, RAB4B, ATP5SL, AXL, EXOSC5, PSMC4, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, MIR641, TGFB1, COQ8B, CNTD2, ITPKC, B9D2, MIA, LTBP4, FCGBP, CEACAM21, NA NA NA NA NA NA NA NA NA LTS-036 CCDC97, NUMBL, SHKBP1) 0.308525476302016 95 0.176215091767503 1.10668945509088 3240 0.25493876514459 4 3 1 -6.92672096865866 LTS-036 NA NA NA NA LTS-036 chr19 42221608 42260569 38962 * c(CEACAM5, CEACAM6) 0.393 1 NA 1.18725951492898 35 0.273615669240235 4 4 0 -5.76483908753203 LTS-036 chr19 42260570 42373679 113110 * c(CEACAM3, LYPD4, CEACAM6, RPS19, DMRTC2) 0.0592072271030836 9 0.143333333333333 1.1910571006367 159 0.56911798886346 5 5 0 -6.74657454675641 LTS-036 chr19 42373680 42373893 214 * RPS19 0.5 1 NA 1.26259843282265 7 0.101411232589088 4 4 0 -5.76441756860658 LTS-036 chr19 42373894 42893766 519873 * c(MIR4323, LOC100505622, RABAC1, ZNF526, DEDD2, MEGF8, ERF, CIC, PRR19, TMEM145, GRIK5, GSK3A, ATP1A3, PAFAH1B3, POU2F2, RPS19, ZNF574, CNFN, ARHGEF1, CD79A) 0.354519375728747 3 0.0570116947067295 1.13340373344698 1419 0.290786746498524 3 2 1 -6.81703152286349 LTS-036 chr19 42893767 42905951 12185 * c(LIPE-AS1, LIPE, CNFN) NA 0 NA 0.906 1 NA NA NA NA NA LTS-036 chr19 42905952 44111890 1205939 * c(LOC100289650, LIPE-AS1, CEACAM8, IRGQ, ZNF428, ETHE1, PRG1, LYPD3, CXCL17, LOC284344, ZNF575, PINLYP, LIPE, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P, PHLDB3, XRCC1, ZNF576, TEX101) 0.299795076744761 27 0.128926876954108 0.92462024671246 924 0.233614281501013 3 2 1 -6.86806872381319 LTS-036 chr19 44111891 44116956 5066 * c(SRRM5, ZNF428, ZNF576) 0.005 1 NA 0.830362945549536 25 0.233696562519292 2 2 0 -5.76562410653604 LTS-036 chr19 44116957 44769974 653018 * c(SRRM5, LOC100379224, LOC100505715, ZNF234, ZNF428, CADM4, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, KCNN4, PLAUR, SMG9, IRGC, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF230, ZNF576, ZNF235) 0.0499315415890765 13 0.104826535591436 0.913351135343393 991 0.190776266166364 3 3 0 -6.94007130338068 LTS-036 chr19 44769975 44778405 8431 * c(ZNF233, ZNF235) 0.301 1 NA 0.957871151433854 37 0.186207204809919 3 3 0 -5.76445187566025 LTS-036 chr19 44778406 50462736 5684331 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR4324, MIR642B, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, APOC4-APOC2, SAE1, MIR4749, MIR4750, MIR4531, MIR4751, MIR5088, RNU6-66P, LOC101059948, TOMM40, CGB3, PPP1R13L, CD3EAP, RUVBL2, KDELR1, CLASRP, KPTN, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, CKM, AP2S1, CLPTM1, CEACAM20, NA NA NA NA NA NA NA NA NA LTS-036 CPT1C, ALDH16A1, NTN5, CRX, PPM1N, KLC3, IGSF23, CCDC155, DACT3, SIX5, IGFL2, AP2A1, DBP, ZNF296, ZNF114, SPACA4, DMPK, DMWD, ADM5, EMP3, ERCC1, ERCC2, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, FBXO46, RPL13A, FOSB, SYNGR4, CBLC, NUP62, PPP1R15A, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, IL4I1, CCDC9, IRF2BP1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, GIPR, ZNF285, BBC3, DKKL1, C5AR2, DHDH, GPR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, HRC, PRMT1, MYPOP, NANOS2, APOC1, APOC1P1, APOC2, APOE, ZNF233, IRF3, KCNA7, IGFL1, KCNJ14, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, LHB, LIG1, BCAM, MIR150, MIR330, IGFL4, NOVA2, NPAS1, NTF4, NUCB1, NOSIP, HSD17B14, PTOV1, TRPM4, QPCTL, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, PNMAL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 TMEM143, PPP5C, CABP5, PRRG2, SPHK2, MEIS3, CEACAM19, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, MARK4, BAX, PVR, NECTIN2, SCAF1, BCAT2, RELB, BCL3, TSKS, RPL18, RPS11, RRAS, RTN2, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR642A, C5AR1, TULP2, CCDC61, VASP, MIR769, CA11, ZNF180, ZNF112, ZNF229, TRAPPC6A, FKRP, TBC1D17, GEMIN7, FUZ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 OPA3, CALM3, RSPH6A, MED25, SYMPK, BCL2L12, GRWD1, CCDC8, ZNF541, AKT1S1, SNORD35B, TEAD2, PPFIA3, PLA2G4C, NAPA, PGLYRP1, EXOC3L2, CYTH2, ZNF235, CCDC114, LOC93429, CGB5, CGB7, CGB8, GNG8, CD37, DHX34) 0.234057105919065 263 0.126466012465574 0.912826178632974 11039 0.315364418726627 3 2 1 -7.36067672867654 LTS-036 NA NA NA NA LTS-036 chr19 50462737 50473069 10333 * c(SIGLEC11, SIGLEC16) 0 1 NA 0.280616234562941 39 0.416012006081289 0 0 0 -5.76844675090975 LTS-036 chr19 50473070 50473168 99 * SIGLEC16 NA 0 NA 1.759 1 NA NA NA NA NA LTS-036 chr19 50473169 50473448 280 * SIGLEC16 0.473 1 NA 2.0299468703913 5 0.537172225640902 7 7 0 -5.76441021820758 LTS-036 chr19 50473449 50475017 1569 * SIGLEC16 0 1 NA 1.57112116572919 15 0.903693758705796 5 5 0 -5.76441337461588 LTS-036 chr19 50475018 50868754 393737 * c(SNAR-B2, SNAR-D, IZUMO2, NAPSB, ZNF473, KCNC3, SIGLEC16, LOC400710, VRK3, NR1H2, MYH14, NAPSA) 0.000346980240358217 14 0.00558451548362194 0.928735767655492 556 0.333484259151495 20 20 0 -14.0668944799081 LTS-036 chr19 50868755 50919797 51043 * c(POLD1, NR1H2, NAPSA) 0.351 1 NA 0.918082820520439 153 0.148927707543974 3 3 0 -5.76926851313245 LTS-036 chr19 50919798 52133652 1213855 * c(SNAR-F, LOC100129083, KLK11, KLK8, FAM71E1, CLDND2, JOSD2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, EMC10, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, MYBPC2, NKG7, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, ZNF175, SYT3, C19orf48, SIGLEC5, NA NA NA NA NA NA NA NA NA LTS-036 SIGLEC10, SIGLEC12, CTU1, ACPT, LRRC4B, CD33, SIGLEC6, KLK4) 0.19617694517701 65 0.145445315853919 0.91142474696897 2279 0.244684381978548 3 3 0 -7.01234612431137 LTS-036 NA NA NA NA LTS-036 chr19 52133653 52133657 5 * SIGLEC5 NA 0 NA 1.239 1 NA NA NA NA NA LTS-036 chr19 52133658 52196631 62974 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) 0.155810056906368 2 0.184554869889689 1.52441401499702 43 0.626524403634802 8 7 1 -6.74845911857643 LTS-036 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.973 1 NA NA NA NA NA LTS-036 chr19 52196825 53431994 1235170 * c(ZNF816-ZNF321P, SPACA6, ZNF480, ZNF534, ZNF578, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, ZNF808, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF613, ZNF614, ZNF611, ZNF528, ZNF577, ZNF616, ZNF766, ZNF468, ZNF432) 0.273382040161675 50 0.0784343323411114 0.887565917360244 1565 0.181233239693459 3 2 1 -7.47989583145212 LTS-036 chr19 53431995 53453777 21783 * c(ZNF816-ZNF321P, ZNF816, ZNF321P) 0 1 NA 0.853823220536485 35 0.228057883703519 3 3 0 -5.76877895095869 LTS-036 chr19 53453778 53579135 125358 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, ERVV-1, ZNF702P, ZNF160) 0.0381031928753498 10 0.13399104447686 0.941633037097457 181 0.499378224629274 4 4 0 -6.82314119114338 LTS-036 chr19 53579136 53612311 33176 * c(ZNF415, ZNF160) 0.304 1 NA 0.942580203899614 18 0.157665651035157 3 3 0 -5.76528242743302 LTS-036 chr19 53612312 53770811 158500 * c(VN1R2, VN1R4, ZNF677, ZNF818P, ZNF415, ZNF665, ZNF347) 0.264771364347706 17 0.0773034033951325 0.903583018313654 271 0.18963582630259 4 3 1 -7.04096859249602 LTS-036 chr19 53770812 53770910 99 * VN1R4 NA 0 NA 0.918 1 NA NA NA NA NA LTS-036 chr19 53770911 53792975 22065 * c(BIRC8, VN1R4, FAM90A27P) NA 0 NA 1.52923154382472 38 0.791622573402106 5 NA NA -5.76442442449362 LTS-036 chr19 53792976 53793042 67 * BIRC8 NA 0 NA 0.865 1 NA NA NA NA NA LTS-036 chr19 53793043 54800203 1007161 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR4752, MIR371B, LILRB2, LILRB5, LILRB3, LILRA3, BIRC8, OSCAR, ZNF813, TMC4, TPM3P9, ZNF525, PRPF31, LOC284379, VSTM1, TFPT, ZNF761, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, NA NA NA NA NA NA NA NA NA LTS-036 MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, ZNF765, NLRP12, MYADM, ZNF845) 0.226913426572644 78 0.139279857199017 0.885246575704805 2247 0.257678379651109 3 3 0 -7.24146119412264 LTS-036 NA NA NA NA LTS-036 chr19 54800204 54818321 18118 * c(LILRA3, LILRA6) 0.016 1 NA 0.280222043274375 39 0.14163455855877 0 0 0 -5.8244018991608 LTS-036 chr19 54818322 54818411 90 * LILRA5 NA 0 NA 0.867 1 NA NA NA NA NA LTS-036 chr19 54818412 55054854 236443 * c(LENG8, CDC42EP5, LILRA4, LILRA5, LAIR1, LAIR2, TTYH1, KIR3DX1, LENG9) 0.234432386126322 15 0.134202334803336 0.866036425022289 531 0.283852579605677 4 3 1 -7.04583170837649 LTS-036 chr19 55054855 55113041 58187 * c(LILRA1, LILRA2, KIR3DX1) 0 1 NA 0.834160588765784 125 0.24580085120197 2 2 0 -5.77778009418501 LTS-036 chr19 55113042 55441995 328954 * c(LILRB1, LILRB4, LILRA1, KIR3DL3, NLRP7, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LILRP2, NCR1) 0.124273257415573 54 0.118164899171566 0.939569332207016 555 0.404489610190835 3 3 0 -6.75012898755693 LTS-036 chr19 55441996 55447840 5845 * NLRP7 0.277 1 NA 0.856499192239265 19 0.216159920223688 3 3 0 -5.76565432897664 LTS-036 chr19 55447841 58002964 2555124 * c(MIMT1, ZNF667-AS1, SBK3, PEG3-AS1, ZNF865, RNU6-64P, TRAPPC2B, ZNF460, RDH13, U2AF2, ZIM3, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF579, NLRP7, NLRP11, PPP6R1, ZIM2, HSPBP1, TMEM86B, UBE2S, SSC5D, ZNF547, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, DNAAF3, IL11, ZNF582-AS1, TMEM238, ZNF470, ZNF749, NA NA NA NA NA NA NA NA NA LTS-036 ZNF805, ZNF772, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, EPS8L1, ZNF444, NLRP2, NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, ZNF667, SBK2, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF17, ZSCAN5A, ZNF419, ISOC2, BRSK1, KMT5C, FIZ1, GALP, ZNF628, ZNF835, ZNF264) 0.219406595488199 173 0.14265736200137 0.911124789292401 4693 0.522434017677393 3 3 0 -7.11965139453982 LTS-036 NA NA NA NA LTS-036 chr19 58002965 58005536 2572 * ZNF419 0.329 1 NA 0.750971841355421 49 0.265878770134366 2 2 0 -5.76445879843191 LTS-036 chr19 58005537 58050267 44731 * c(ZNF549, ZNF773, ZNF419) 0.38 1 NA 0.888984548260433 126 0.409029203909444 3 3 0 -5.76575429959909 LTS-036 chr19 58050268 58058383 8116 * c(ZNF550, ZNF549) NA 0 NA 0.779 1 NA NA NA NA NA LTS-036 chr19 58058384 58867617 809234 * c(A1BG, LOC100128398, ZNF587B, ZNF256, ZNF211, ZNF274, C19orf18, ZNF418, ZNF417, ZNF497, ZNF550, ZSCAN4, FKBP1AP1, ZNF544, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, A1BG-AS1, ZNF586, ZNF416, ZSCAN18, ZNF814, ZNF8, ZNF134, ZNF135, ZNF154, ZNF329, ZNF552, ZNF671, ZNF606, ZNF587, ZNF551) 0.323421141459328 68 0.116839807453601 0.754950138813339 1781 0.159523894594655 2 1 1 -6.94642223494375 LTS-036 chr19 58867618 59074653 207036 * c(A1BG, MZF1-AS1, MIR4754, TRIM28, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, CHMP2A, ZNF324B, ZNF446, RPS5, RNF225, MZF1, ZNF132, ZBTB45, UBE2M) 0.370357840139933 10 0.057603626429052 0.687698854223057 618 0.142141513417858 2 1 1 -6.78079739056518 LTS-036 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.692460219368991 35 0.0906782102554194 2 NA NA -5.7651935522309 LTS-036 chr20 68260 77013 8754 * DEFB125 0.322 1 NA 1.30871191553047 13 0.435012230892007 4 4 0 -5.76451114502346 LTS-036 chr20 77014 402921 325908 * c(RBCK1, C20orf96, DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, TRIB3, SOX12, NRSN2, DEFB126, ZCCHC3) 0.136879614370382 34 0.175245638656409 1.17471723500904 539 0.510557890278616 3 3 0 -6.77867884364983 LTS-036 chr20 402922 416149 13228 * c(RBCK1, TBC1D20) 0.359 1 NA 1.29526555461818 33 0.307596985198214 4 4 0 -5.76461984305246 LTS-036 chr20 416150 1559003 1142854 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, SLC52A3, TBC1D20, SIRPD, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, RAD21L1, TCF15, FAM110A, SCRT2, PSMF1, SNPH) 0.25358031489286 47 0.156231128740143 1.21090462123393 1401 0.289069704234798 4 3 1 -6.7681453122993 LTS-036 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.894 1 NA NA NA NA NA LTS-036 chr20 1559182 1586631 27450 * SIRPB1 NA 0 NA 0.191371754266083 39 0.21326021435875 0 NA NA -5.7652086247119 LTS-036 chr20 1586632 1591938 5307 * SIRPB1 NA 0 NA 1.11 1 NA NA NA NA NA LTS-036 chr20 1591939 5526032 3934094 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, PDYN, SMOX, C20orf27, AVP, AP5S1, SIRPG, PRNP, GPCPD1, CPXM1, MAVS, EBF4, PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, NA NA NA NA NA NA NA NA NA LTS-036 DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.280548331940753 147 0.147868211956974 1.22090379217301 4499 0.289520457719374 4 3 1 -6.73788658627329 LTS-036 NA NA NA NA LTS-036 chr20 5526033 5526113 81 * GPCPD1 0 1 NA 2.399 1 NA NA NA NA NA LTS-036 chr20 5526114 5844341 318228 * c(C20orf196, GPCPD1) 0.16944360378616 6 0.208458788892833 1.19065246159021 200 0.323887387216591 4 4 0 -6.83522153869041 LTS-036 chr20 5844342 6760344 916003 * c(CHGB, C20orf196, LRRN4, TRMT6, CRLS1, FERMT1, BMP2, MCM8) 0.0601996314538004 16 0.128516665585959 1.36834788237583 606 0.406059552877803 5 5 0 -6.7602039183082 LTS-036 chr20 6760345 7959508 1199164 * c(HAO1, BMP2) 0.298 1 NA 1.24646179066812 89 0.245793511833923 4 4 0 -5.76601103935884 LTS-036 chr20 7959509 19955861 11996353 * c(C20orf78, LOC100130264, SNAP25-AS1, LOC100270804, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, MACROD2, BANF2, SCP2D1, ISM1, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, SNX5, LINC00652, LOC339593, LINC00493, LINC00851, PCSK2, ESF1, PLCB4, RIN2, DZANK1, SPTLC3, KIF16B, TASP1, TMX4, OTOR, PAK5, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, ANKEF1, SNAP25, SNRPB2, SNORD17, ZNF133, NDUFAF5, NA NA NA NA NA NA NA NA NA LTS-036 SEL1L2, MKKS, MGME1, DTD1) 0.290846823215045 92 0.13312412436989 1.29655207843401 3976 0.540058624914258 4 3 1 -6.79654735201455 LTS-036 NA NA NA NA LTS-036 chr20 19955862 19955865 4 * RIN2 NA 0 NA 1.134 1 NA NA NA NA NA LTS-036 chr20 19955866 20624042 668177 * c(CFAP61, INSM1, NAA20, CRNKL1, RIN2, RALGAPA2) 0.291106504077896 15 0.219336618878272 1.12687499768338 827 0.379623587592075 4 3 1 -6.7551268357792 LTS-036 chr20 20624043 20624044 2 * RALGAPA2 NA 0 NA 1.41 1 NA NA NA NA NA LTS-036 chr20 20624045 23028724 2404680 * c(LINC01432, LINC00261, XRN2, LOC284788, FOXA2, NKX2-2, PAX1, KIZ, RALGAPA2, NKX2-4, SSTR4, THBD) 0.309161585566508 13 0.105458097159062 1.28053824677023 554 0.329621584989667 4 3 1 -6.77220876142133 LTS-036 chr20 23028725 23060257 31533 * c(CD93, THBD) 0.007 1 NA 1.20404080307364 43 0.246466600497057 4 4 0 -5.76457531730769 LTS-036 chr20 23060258 24930085 1869828 * c(CST8, CSTL1, CST9L, CST9, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, CD93, NXT1, FLJ33581, NAPB, GZF1, SYNDIG1, CST7, GGTLC1) 0.102014522622107 34 0.174596841440497 1.28243041025655 720 0.305522105685133 4 4 0 -6.75890776714439 LTS-036 chr20 24930086 24930221 136 * CST7 0.372 1 NA 1.32158132253692 3 0.269005576150384 4 4 0 -5.76441563756467 LTS-036 chr20 24930222 26188981 1258760 * c(LOC100134868, NANP, NCOR1P1, NINL, ABHD12, ZNF337, LOC284798, FAM182A, MIR663AHG, VSX1, APMAP, PYGB, MIR663A, FAM182B, ACSS1, CST7, ENTPD6, GINS1) 0.299448098078663 47 0.153952796206368 1.25934934408984 1187 0.328933694513417 4 3 1 -6.73857068915388 LTS-036 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.148 1 NA NA NA NA NA LTS-036 chr20 29625845 29625876 32 * FRG1BP 0.266 1 NA 1.184 1 NA NA NA NA NA LTS-036 chr20 29625877 29652191 26315 * c(MLLT10P1, FRG1BP) 0.298172470925856 17 0.113127628341257 1.15299363447787 47 0.334561355580032 4 3 1 -6.73668684255219 LTS-036 chr20 29652192 29652219 28 * FRG1BP NA 0 NA 1.07 1 NA NA NA NA NA LTS-036 chr20 29652220 29845416 193197 * FRG1BP NA 0 NA 1.78 1 NA NA NA NA NA LTS-036 chr20 29845417 29965014 119598 * c(DEFB118, DEFB115, DEFB116, DEFB119) 0.001 1 NA 1.92597361001825 55 0.626371361218632 7 7 0 -5.76471125602023 LTS-036 chr20 29965015 31587752 1622738 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, TSPY26P, NOL4L, CCM2L, SUN5, LINC00028, LOC149950, COMMD7, TTLL9, ASXL1, DNMT3B, MAPRE1, TPX2, FOXS1, POFUT1, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, C20orf203, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.150931787246129 25 0.16616083573855 1.91249688674632 2415 0.425492972501187 7 6 1 -6.7648309661586 LTS-036 chr20 31587753 31673846 86094 * c(BPIFB6, SUN5, BPIFB4, BPIFB3, BPIFB2) 0.376 1 NA 1.97825682096758 293 0.364789119988258 7 7 0 -5.76448397716851 LTS-036 chr20 31673847 33764632 2090786 * c(MIR499B, MIR4755, PROCR, PXMP4, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, BPIFA2, BPIFB4, ACTL10, E2F1, AHCY, RALY, NCOA6, TRPC4AP, GGT7, GSS, BPIFA4P, ASIP, BPIFA1, CDK5RAP1, EDEM2, ACSS2, MIR499A, MYH7B, TP53INP2, NECAB3, SNTA1, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2, CBFA2T2, BPIFB1) 0.41142504500875 38 0.109540528168902 1.95936398867668 2548 0.420247203958308 7 4 3 -6.77968965698664 LTS-036 chr20 33764633 33857711 93079 * c(PROCR, MMP24, EDEM2) 0 1 NA 2.14668547222421 41 0.362091049390592 8 8 0 -5.76560802679658 LTS-036 chr20 33857712 34167382 309671 * c(MMP24-AS1, MMP24, CEP250, FAM83C, C20orf173, EIF6, ERGIC3, UQCC1, EDEM2, GDF5) 0.137345436450399 10 0.217347877836431 1.89606998302121 834 0.48231863062103 7 6 1 -6.75971021890361 LTS-036 chr20 34167383 34205035 37653 * SPAG4 0.396 1 NA 1.82717653802497 49 0.375242144043905 6 6 0 -5.76472618990458 LTS-036 chr20 34205036 36965906 2760871 * c(LOC100287792, TGIF2-C20orf24, LINC00489, RBM12, MYL9, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, ROMO1, CNBD2, EPB41L1, DLGAP4, SAMHD1, AAR2, GHRH, NNAT, PHF20, SCAND1, C20orf24, CTNNBL1, NDRG3, RPRD1B, RBL1, TGIF2, RPN2, MANBAL, NORAD, SPAG4, BPI, SRC, TGM2, DSN1, SLA2, KIAA1755, CPNE1, NFS1, RBM39, TTI1) 0.356438649863479 75 0.0965834708780278 1.89789032214078 3562 0.391750723399086 7 4 3 -6.80778495549638 LTS-036 chr20 36965907 36982754 16848 * LBP 0 1 NA 2.21577934201588 23 0.372766306642096 8 8 0 -5.76444331430729 LTS-036 chr20 36982755 37279255 296501 * c(SNHG11, ADIG, SNORA71B, SNORA71A, ARHGAP40, SNHG17, LBP, RALGAPB, SNORA71E, SNORA71C, SNORA71D) 0.176039599628269 12 0.219475597456273 1.92772413585201 439 0.559562395514521 7 6 1 -6.73423565671605 LTS-036 chr20 37279256 37383640 104385 * c(SLC32A1, ARHGAP40, ACTR5) 0.42 1 NA 1.79029779554879 85 0.376995554216704 6 6 0 -5.76466384232442 LTS-036 chr20 37383641 39832628 2448988 * c(ZHX3, PPP1R16B, LOC339568, PLCG1, DHX35, TOP1, ACTR5, FAM83D, MAFB) 0.435838970048178 16 0.0329461682142248 1.8299654487328 997 0.378034247705627 6 3 3 -7.93016618484343 LTS-036 chr20 39832629 40702812 870184 * c(PTPRT, ZHX3, LPIN3, CHD6, EMILIN3) 0.003 1 NA 1.88572338621243 561 0.388354142576106 7 7 0 -5.77755876930131 LTS-036 chr20 40702813 42891934 2189122 * c(OSER1-AS1, SGK2, PTPRT, GTSF1L, L3MBTL1, MYBL2, IFT52, OSER1, JPH2, SRSF6, GDAP1L1, TOX2) 0.136584189192425 31 0.214058001385113 1.98661357933723 1105 0.458730620948264 7 6 1 -6.75937535005712 LTS-036 chr20 42891935 42965863 73929 * c(FITM2, R3HDML, GDAP1L1) 0.429 1 NA 1.83996807715863 138 0.283383145663917 6 6 0 -5.76586685717439 LTS-036 chr20 42965864 43567442 601579 * c(ADA, MIR3646, SERINC3, PKIG, RIMS4, R3HDML, HNF4A, KCNK15, YWHAB, LINC01260, TTPAL, PABPC1L, WISP2) 0.388660642622407 14 0.120519388800819 1.94103593536112 879 0.806119219897144 7 4 3 -6.7354194376434 LTS-036 chr20 43567443 43703631 136189 * c(STK4-AS1, TOMM34, STK4, PABPC1L) 0 1 NA 1.91195001650991 149 0.29489502062707 7 7 0 -5.76656387621096 LTS-036 chr20 43703632 45214052 1510421 * c(ACOT8, ZNF663P, EPPIN-WFDC6, WFDC2, SPINT3, UBE2C, RBPJL, DNTTIP1, WFDC12, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, WFDC5, WFDC13, WFDC11, WFDC9, TP53TG5, WFDC10B, KCNS1, SPINT4, MMP9, SLC35C2, PIGT, PI3, PLTP, CTSA, ZNF334, DBNDD2, EPPIN, SLC12A5, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLC13A3, SLPI, STK4, TNNC2, SYS1-DBNDD2, MKRN7P, MATN4, SYS1, WFDC8, SNX21, NA NA NA NA NA NA NA NA NA LTS-036 ZSWIM1, CD40) 0.0352973420230081 63 0.130024793807213 1.96032002821677 2903 0.477957670521636 7 7 0 -6.74504875975598 LTS-036 NA NA NA NA LTS-036 chr20 45214053 45242269 28217 * SLC13A3 0.448 1 NA 1.89668705154235 63 0.302894941559148 7 7 0 -5.76498668861976 LTS-036 chr20 45242270 49236475 3994206 * c(SNORD12B, LOC100131496, MIR3616, TRERNA1, CEBPB, ARFGEF2, TP53RK, FAM65C, CSE1L, EYA2, SLC9A8, ZMYND8, SNORD12C, LINC00494, LINC01270, KCNB1, TMEM189, TMEM189-UBE2V1, ZFAS1, DDX27, RNF114, SULF2, ZNFX1, PTGIS, PREX1, PTPN1, SLC13A3, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, SLC2A10, NCOA3, B4GALT5, SPATA2) 0.36106051415204 73 0.133830788627951 1.90318288544028 3074 0.432499249998958 7 4 3 -6.78286355725914 LTS-036 chr20 49236476 49236478 3 * FAM65C 0 1 NA 2.963 1 NA NA NA NA NA LTS-036 chr20 49236479 50213945 977467 * c(MIR3194, ATP9A, FAM65C, ADNP, MOCS3, KCNG1, NFATC2, BCAS4, PARD6B, DPM1) 0.103113942063408 14 0.197428746362099 1.91249147643988 661 0.529901917683494 7 7 0 -6.77763658294933 LTS-036 chr20 50213946 50214629 684 * ATP9A 0.449 1 NA 1.86462021595579 15 0.437107995808816 6 6 0 -5.76441910489756 LTS-036 chr20 50214630 57266243 7051614 * c(MIR4325, MTRNR2L3, MIR4756, MIR4532, MIR5095, ATP9A, FAM210B, TSHZ2, C20orf85, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, CYP24A1, APCDD1L, FAM209A, SPO11, FAM209B, SUMO1P1, MC3R, PCK1, RTFDC1, PFDN4, PPP4R1L, RBM38, ZFP64, DOK5, PMEPA1, CASS4, SALL4, RAB22A, BMP7, AURKA, TFAP2C, ZNF217, NPEPL1, ZBP1, RAE1, BCAS1, STX16, VAPB) 0.284006234589731 93 0.205300502109549 1.88207281449444 3210 0.427539526487855 7 5 2 -6.83158314272832 LTS-036 chr20 57266244 57486132 219889 * c(MIR298, GNAS-AS1, GNAS, MIR296, NPEPL1) 0.245317112693441 11 0.0422565756044924 2.41056214453089 319 0.468608305403417 9 7 2 -6.73442414497763 LTS-036 chr20 57486133 60793694 3307562 * c(CDH4, MIR1257, LOC100506384, SLMO2-ATP5E, MIR4533, SYCP2, HRH3, PHACTR3, ZNF831, LSM14B, CTSZ, EDN3, SS18L1, MTG2, GNAS, C20orf197, MIR646HG, PRELID3B, ATP5E, NELFCD, PPP1R3D, PSMA7, CDH26, FAM217B, TAF4, TUBB1) 0.274321600668126 37 0.174918097522357 1.7020534843853 1913 0.384635440828032 6 5 1 -6.8293538619107 LTS-036 chr20 60793695 60794768 1074 * HRH3 NA 0 NA 1.863 1 NA NA NA NA NA LTS-036 chr20 60794769 61048697 253929 * c(MIR4758, ADRM1, HRH3, GATA5, RBBP8NL, LAMA5, RPS21, CABLES2, OSBPL2) 0.301987934062851 15 0.194990060796759 1.97756435604249 851 0.413827176029959 7 5 2 -6.7333494027563 LTS-036 chr20 61048698 61050093 1396 * GATA5 NA 0 NA 1.504 1 NA NA NA NA NA LTS-036 chr20 61050094 61443547 393454 * c(SLCO4A1-AS1, LINC00659, OGFR-AS1, OGFR, MIR1-1HG, GATA5, C20orf166-AS1, SLCO4A1, MIR1-1, MIR133A2, NTSR1, MRGBP) 0.262861623186173 30 0.154922824687634 1.70828122532078 413 0.552213957342566 5 4 1 -6.75810831006706 LTS-036 chr20 61443548 61443636 89 * OGFR 0 1 NA 1.82158703003708 3 0.133702405862173 6 6 0 -5.76441517776164 LTS-036 chr20 61443637 61467800 24164 * c(OGFR, COL9A3) 0.0329524273423295 9 0.115666666666667 1.82098989792632 173 1.05227343447317 10 10 0 -6.73653797978953 LTS-036 chr20 61467801 61468571 771 * COL9A3 0.402 1 NA 1.64219112687182 7 0.329978137803963 6 6 0 -5.76442663229121 LTS-036 chr20 61468572 62422080 953509 * c(DPH3P1, LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, RTEL1-TNFRSF6B, ARFRP1, TCFL5, DIDO1, CHRNA4, BHLHE23, NKAIN4, COL9A3, ZBTB46, EEF1A2, GMEB2, KCNQ2, MIR124-3, STMN3, RTEL1, YTHDF1, LIME1, GID8, ARFGAP1, SLC2A4RG, PTK6, COL20A1, SLC17A9, LOC63930, SRMS, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, ZGPAT, HELZ2, TNFRSF6B) 0.299299149087563 113 0.154249668320522 1.73694032608426 2477 0.446693760614567 6 4 2 -6.77889699398033 LTS-036 chr20 62422081 62489027 66947 * ZBTB46 0.002 1 NA 1.52486498953025 15 0.615762686198413 5 5 0 -5.76446690335251 LTS-036 chr20 62489028 62872271 383244 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RGS19, SAMD10, ABHD16B, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, SOX18, UCKL1, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5) 0.0490404602108822 18 0.139298346766086 1.71554169052524 1068 0.376942479329068 6 6 0 -6.73694899648373 LTS-036 chr20 62872272 62959313 87042 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.73125014634254 119 0.560781500393506 6 NA NA -5.76442525912046 LTS-036 chr21 9825764 9907202 81439 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.136 1 NA 0.485497818848249 25 0.30702042277347 1 1 0 -5.76611267308455 LTS-036 chr21 9907203 11059877 1152675 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.266938971156339 37 0.16332349207344 0.861471907791898 166 0.399811792706819 3 2 1 -6.95850758377627 LTS-036 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.4038617657181 5 0.168164205465967 5 NA NA -5.76733282592585 LTS-036 chr21 14745307 14756794 11488 * character(0) 0.414 1 NA 1.00913801456908 11 0.529113838928311 3 3 0 -5.7644406772279 LTS-036 chr21 14756795 15966430 1209636 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.337623350872363 15 0.181414757629346 0.948138340883492 389 0.213924074862415 3 2 1 -6.74877534650867 LTS-036 chr21 15966431 15974247 7817 * c(SAMSN1-AS1, LOC388813) NA 0 NA 1.519 1 NA NA NA NA NA LTS-036 chr21 15974248 30257487 14283240 * c(LINC01549, MIR4759, RNU6-67P, BTG3, ADAMTS5, MIR155HG, CYYR1, LINC00161, CHODL, CXADR, C21orf91-OT1, LINC00314, GABPA, D21S2088E, LINC00515, N6AMT1, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00113, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, NRIP1, ADAMTS1) 0.355648922074198 53 0.131243900957193 1.09044748139678 2173 0.302533668829992 3 2 1 -7.73530650252484 LTS-036 chr21 30257488 30341891 84404 * c(LTN1, N6AMT1) 0 1 NA 1.02783084458781 175 0.303771731016664 3 3 0 -5.76598504467188 LTS-036 chr21 30341892 31587793 1245902 * c(GRIK1-AS2, RWDD2B, USP16, CCT8, LINC00189, LTN1, CLDN17, LINC00307, GRIK1, MAP3K7CL, BACH1, GRIK1-AS1, CLDN8) 0.107029462074368 11 0.206604144990542 1.05651949364363 685 0.261307697122059 3 3 0 -6.80424141426989 LTS-036 chr21 31587794 31654153 66360 * c(KRTAP24-1, CLDN8) 0.393 1 NA 1.11098574304419 27 0.170627457769051 4 4 0 -5.77901466967931 LTS-036 chr21 31654154 34945721 3291568 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, MIR4327, PAXBP1-AS1, LINC00159, OLIG2, OLIG1, KRTAP13-1, TCP10L, KRTAP15-1, GART, KRTAP13-4, HUNK, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, IFNAR1, IFNAR2, IFNGR2, IL10RB, KRTAP26-1, NA NA NA NA NA NA NA NA NA LTS-036 C21orf62-AS1, MIS18A, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, KRTAP24-1, KRTAP27-1, SOD1, SON, SNORA80A, TIAM1, KRTAP19-8, LINC01548, TMEM50B, URB1-AS1, SYNJ1, PAXBP1, URB1) 0.375348923964287 74 0.147699077810524 1.0919330424076 2991 0.394534481245047 3 2 1 -6.90793275794614 LTS-036 NA NA NA NA LTS-036 chr21 34945722 35239562 293841 * c(DONSON, ITSN1, SON, CRYZL1) 0 1 NA 1.11893623827496 369 3.67295850113829 4 4 0 -5.76453141434836 LTS-036 chr21 35239563 38118089 2878527 * c(LOC100133286, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00310, RCAN1, MORC3, CLDN14, DONSON, KCNE1, ATP5O, LINC00160, SMIM11A, SETD4, CLIC6, ITSN1, SIM2, MRPS6, SLC5A3, MIR802, RUNX1-IT1, CHAF1B, RUNX1, CBR1, CBR3, DOPEY2, KCNE2) 0.25666332577245 49 0.211780882061632 1.09099689473406 2001 0.361630002372856 4 3 1 -6.93722204625667 LTS-036 chr21 38118090 38439686 321597 * c(HLCS, PIGP, RIPPLY3, SIM2) 0.396 1 NA 1.09537368371691 299 0.366650811630954 3 3 0 -5.78406862647847 LTS-036 chr21 38439687 40887389 2447703 * c(BRWD1-AS1, DSCR4, DSCR3, LCA5L, DYRK1A, ERG, ETS2, DSCR9, NA, DSCR10, HMGN1, KCNJ6, KCNJ15, LINC00114, PIGP, BRWD1, SH3BGR, TTC3, WRB, DSCR8, PSMG1) 0.265250897969386 69 0.202841005647373 1.08741716090172 1854 0.516561229480776 4 3 1 -6.82670239012509 LTS-036 chr21 40887390 40887488 99 * SH3BGR NA 0 NA 1.077 1 NA NA NA NA NA LTS-036 chr21 40887489 46705621 5818133 * c(MIR3197, ITGB2-AS1, DSCAM-AS1, MIR4760, LRRC3-AS1, DSCAM-IT1, B3GALT5, ADARB1, WDR4, HSF2BP, LINC00313, B3GALT5-AS1, TSPEAR-AS2, CRYAA, CSTB, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, POFUT2, ICOSLG, BACE2, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, NA NA NA NA NA NA NA NA NA LTS-036 KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, MX1, MX2, NDUFV3, ZBTB21, PCP4, PDE9A, PFKL, PKNOX1, UBASH3A, SLC37A1, TSPEAR, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, TMPRSS3, SUMO3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TRPM2, LINC00163, SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, LRRC3, C21orf33, LINC01547, FAM207A, PDXK, RRP1, CBS, RSPH1, UMODL1, ABCG1) 0.331405306950253 246 0.157030963647466 1.12405550436187 6275 0.299539645133477 4 3 1 -7.08518838468772 LTS-036 NA NA NA NA LTS-036 chr21 46705622 46876173 170552 * c(COL18A1-AS2, POFUT2, COL18A1-AS1, LOC642852, COL18A1) 0 1 NA 1.05449568547785 49 0.199622287891731 3 3 0 -5.7804704273132 LTS-036 chr21 46876174 47361998 485825 * c(LOC100129027, PCBP3, SLC19A1, COL18A1) 0.0577087314040004 16 0.159891994796488 1.2083972437654 472 1.11520003735549 5 5 0 -6.74652483983078 LTS-036 chr21 47361999 47401760 39762 * c(COL6A1, PCBP3) 0.32 1 NA 1.12318358709618 9 0.169286574909071 4 4 0 -5.77153152206363 LTS-036 chr21 47401761 47655027 253267 * c(FTCD, MCM3AP-AS1, COL6A1, COL6A2, LSS, SPATC1L) 0.369871751445279 39 0.123504943160811 1.13786155866835 677 0.276914499347961 4 2 2 -6.75431804768517 LTS-036 chr21 47655028 47674275 19248 * c(MCM3AP-AS1, MCM3AP) 0 1 NA 1.15805597915806 57 0.284392507585779 4 4 0 -5.76495842329628 LTS-036 chr21 47674276 48084820 410545 * c(DIP2A-IT1, DIP2A, PRMT2, PCNT, C21orf58, YBEY, S100B, MCM3AP) 0.243290110399539 25 0.189791446944622 1.08967044325667 932 0.286814565126408 4 3 1 -6.81418929121238 LTS-036 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.02873444213631 5 0.129504826164896 3 NA NA -5.76442838169184 LTS-036 chr22 16157762 17326914 1169153 * c(CCT8L2, XKR3, ANKRD62P1-PARP4P3, POTEH, HSFY1P1, TPTEP1, OR11H1) 0.3038184975116 9 0.156797994601688 0.760717006422323 219 0.181265303517553 2 1 1 -6.96518916984284 LTS-036 chr22 17326915 17442987 116073 * GAB4 0 1 NA 0.862858807922498 15 0.285049486096379 3 3 0 -5.77701113553446 LTS-036 chr22 17442988 18273770 830783 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, IL17RA, BCL2L13, CECR6, CECR5, CECR3, CECR2, CECR1, ATP6V1E1, MICAL3, BID, SLC25A18) 0.0821079759173057 26 0.0877131425991304 0.840216478020001 1134 0.229401636864082 3 3 0 -6.97502689061653 LTS-036 chr22 18273771 18300240 26470 * MICAL3 0.222 1 NA 0.874449693964696 25 0.176603491849208 3 3 0 -5.77034735227823 LTS-036 chr22 18300241 24342396 6042156 * c(DDTL, MIR301B, FLJ41941, MIR1286, MIR1306, IGLL5, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, C22orf39, TANGO2, ZNF280A, COMT, CRKL, ZNF280B, LINC00895, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, TSSK2, SDF2L1, PPIL2, GSTTP1, DGCR11, DGCR9, POM121L1P, DGCR5, DGCR10, FBXW4P1, POM121L4P, RGL4, GGT3P, TRMT2A, RSPH14, GNAZ, LOC284865, MIF-AS1, GSC2, POM121L8P, YPEL1, NA NA NA NA NA NA NA NA NA LTS-036 ZDHHC8, VPREB3, SERPIND1, IGLL1, PI4KAP2, CCDC188, LRRC74B, BCRP2, CHCHD10, MIR130B, MIR185, ARVCF, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, TUBA8, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, MRPL40, RTN4R, SLC7A4, SLC25A1, SMARCB1, SLC2A11, TBX1, MIR648, CLDN5, MIR650, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, VPREB1, ZNF70, ZNF74, C22orf29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 THAP7, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, TMEM191A, KLHL22, DGCR6L, RIMBP3, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20, DGCR2) 0.143576745525664 266 0.0804413510956553 0.825849771458047 7552 0.271130972868364 2 2 0 -7.59482030017127 LTS-036 NA NA NA NA LTS-036 chr22 24342397 24345595 3199 * GSTTP1 NA 0 NA 0.075 1 NA NA NA NA NA LTS-036 chr22 24345596 24384316 38721 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 0.0439315044818896 55 0.035236077318299 0 NA NA -13.9641808740536 LTS-036 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.798 1 NA NA NA NA NA LTS-036 chr22 24400149 37319425 12919277 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, CACNG2, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, IFT27, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, CSF2RB, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, NA NA NA NA NA NA NA NA NA LTS-036 PES1, CABIN1, SEC14L2, RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, PISD, OSBP2, APOL2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, TXN2, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MB, MCM5, MN1, PIWIL3, MIAT, MYH9, NCF4, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, UPB1, TUG1, CCDC157, NA NA NA NA NA NA NA NA NA NA NA NA LTS-036 ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, PVALB, RFPL1, BCRP3, ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TIMP3, TOP1P2, SEC14L6, XBP1, YWHAH, FOXRED2, APOL6, APOL5, APOL4, APOL3, SYN3, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, APOL1, THOC5, EIF3D, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.153947999030611 249 0.0630810572387244 0.796690312736379 11684 0.225977466356586 2 2 0 -8.10994301571873 LTS-036 NA NA NA NA LTS-036 chr22 37319426 37325833 6408 * CSF2RB 0 1 NA 0.828068957619431 27 0.293737823291296 2 2 0 -5.76534611741839 LTS-036 chr22 37325834 37524777 198944 * c(LL22NC01-81G9.3, CSF2RB, TMPRSS6, TEX33, IL2RB, MPST, TST, KCTD17) 0.13299288328703 18 0.0592506859947602 0.817065751365444 480 0.246064469228496 2 2 0 -6.78218198941515 LTS-036 chr22 37524778 41078473 3553696 * c(LOC100130899, LOC100506472, MIR4534, APOBEC3A_B, DNAL4, TAB1, DDX17, KDELR3, TRIOBP, CDC42EP1, DMC1, FAM83F, ELFN2, C1QTNF6, ANKRD54, APOBEC3D, CSNK1E, ENTHD1, ADSL, APOBEC3H, APOBEC3A, APOBEC3F, TNRC6B, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, CBY1, SUN2, TMEM184B, GGA1, SNORD43, CYTH4, APOBEC3C, SGSM3, MCHR1, CARD10, H1F0, IL2RB, KCNJ4, LGALS1, LGALS2, LOC400927, MFNG, MGAT3, ATF4, EIF3L, NA NA NA NA NA NA NA NA NA LTS-036 PDGFB, POLR2F, MIEF1, TOMM22, PDXP, MKL1, RAC2, APOBEC3G, RPL3, FAM227A, SOX10, SSTR3, MIR658, MIR659, NOL12, BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, CACNA1I, SYNGR1, RPS19BP1, GRAP2, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.10493644709549 77 0.0740269551505295 0.835209195230051 6168 0.224220092956813 3 3 0 -7.59993339784927 LTS-036 NA NA NA NA LTS-036 chr22 41078474 41166135 87662 * c(SLC25A17, MCHR1) 0.17 1 NA 0.745060885576994 19 0.198596287427829 2 2 0 -5.7664713816365 LTS-036 chr22 41166136 41940441 774306 * c(MIR1281, MIR4766, SLC25A17, TOB2, DNAJB7, CHADL, POLR3H, EP300, ZC3H7B, ACO2, RANGAP1, XPNPEP3, ST13, TEF, L3MBTL2, PHF5A, RBX1) 0.150145407604177 39 0.0517520299562094 0.811751893649814 1575 0.215377000893003 2 2 0 -6.89896518747636 LTS-036 chr22 41940442 42487006 546565 * c(NDUFA6-AS1, TNFRSF13C, MEI1, FAM109B, WBP2NL, POLR3H, XRCC6, CSDC2, DESI1, LINC00634, MIR33A, SHISA8, NAGA, NDUFA6, SNU13, PMM1, SEPT3, SREBF2, CENPM, C22orf46, CCDC134, SMDT1) 0.200610355414586 40 0.0850618930016588 0.608528032797807 1312 0.161571553108801 2 2 0 -7.31810924965636 LTS-036 chr22 42487007 42522457 35451 * NDUFA6-AS1 NA 0 NA 0.857 1 NA NA NA NA NA LTS-036 chr22 42522458 42896795 374338 * c(NDUFA6-AS1, NFAM1, CYP2D7, CYP2D6, OGFRP1, TCF20, SERHL) 0.111292132502287 19 0.113229596486377 0.705014204405653 422 0.223180781952921 2 2 0 -6.77923713234479 LTS-036 chr22 42896796 42898652 1857 * SERHL NA 0 NA 1.24 1 NA NA NA NA NA LTS-036 chr22 42898653 42950113 51461 * c(SERHL2, RRP7A, SERHL) 0.39875594025222 4 0.0288097205817759 1.07482447790585 99 0.2795296886481 4 2 2 -6.87770627886531 LTS-036 chr22 42950114 42951965 1852 * c(SERHL2, RRP7BP) NA 0 NA 0.106 1 NA NA NA NA NA LTS-036 chr22 42951966 43015977 64012 * c(CYB5R3, SERHL2, RNU12, POLDIP3, RRP7BP) 0.216603444419682 13 0.0638122245341753 0.608570261966598 192 0.184248996788065 1 1 0 -6.82525961126891 LTS-036 chr22 43015978 43193323 177346 * c(CYB5R3, ARFGAP3, ATP5L2, A4GALT) 0 1 NA 0.673131847016053 123 0.25228644187477 2 2 0 -5.7708717040721 LTS-036 chr22 43193324 43459864 266541 * c(PACSIN2, TTLL1, ARFGAP3) 0.0181106540346045 11 0.07145818866493 0.672016309520732 221 0.422842262187564 4 4 0 -7.51074595156806 LTS-036 chr22 43459865 43529314 69450 * c(TTLL1, MCAT, BIK) 0.168 1 NA 0.630665867257397 75 0.171255567937365 2 2 0 -5.78737088332102 LTS-036 chr22 43529315 45755666 2226352 * c(MIR1249, NUP50-AS1, EFCAB6-AS1, NUP50, PHF21B, PNPLA5, TTLL12, KIAA0930, ARHGAP8, SAMM50, SULT4A1, SMC1B, MCAT, PARVB, LINC00207, LINC00229, FAM118A, PRR5-ARHGAP8, PRR5, PARVG, EFCAB6, TSPO, UPK3A, MPPED1, SCUBE1, PNPLA3, LDOC1L, KIAA1644) 0.154155663345587 68 0.102580420923314 0.651638737230986 1924 0.201492145084315 2 2 0 -7.02203185960302 LTS-036 chr22 45755667 45898074 142408 * c(RIBC2, SMC1B) 0.33 1 NA 0.635338974813299 127 0.199782949964738 2 2 0 -5.79507229183257 LTS-036 chr22 45898075 50515843 4617769 * c(LINC01310, LINC00899, MIR3201, MIR3619, MIR4763, MIR4762, MIR4535, PKDREJ, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, MLC1, BRD1, TBC1D22A, ATXN10, FAM19A5, LOC284933, C22orf34, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, PIM3, GTSE1, PPARA, TTC38, PRR34, TRMU, CERK, LOC730668, WNT7B, ALG12, CRELD2, NA, CELSR1, ZBED4) 0.20821067936695 113 0.0771095256806533 0.617721128331701 2871 0.165349562775175 2 2 0 -8.80391381376974 LTS-036 chr22 50515844 50528916 13073 * c(MLC1, MOV10L1) 0 1 NA 0.633596227957517 33 0.107094221825852 2 2 0 -5.77469349438994 LTS-036 chr22 50528917 50616317 87401 * c(MOV10L1, PANX2) 0 13 0 0.632371206844166 213 0.299817799737177 0 0 0 -Inf LTS-036 chr22 50616318 50617968 1651 * PANX2 0.228 1 NA 0.57496091159395 27 0.104279224657439 2 2 0 -5.76880700337362 LTS-036 chr22 50617969 51183255 565287 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, MAPK8IP2, PLXNB2, NCAPH2, CHKB-CPT1B, ARSA, DENND6B, ODF3B, ACR, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ADM2, TRABD, SELENOO, HDAC10, SHANK3, TUBGCP6, LMF2, PPP6R2, SCO2) 0.209419365392145 49 0.0791227948613209 0.62613217275035 2196 0.154285008405431 2 2 0 -7.38241331604832 LTS-036 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.565451950200464 70 0.211877317621701 1 NA NA -5.78643627814721 LTS-036 chrX 2699993 2700027 35 * XG 0.49 1 NA 0.86 1 NA NA NA NA NA LTS-036 chrX 2700028 5808871 3108844 * c(LINC01546, MXRA5, ARSH, LOC389906, ARSD, ARSE, ARSF, PRKX, NLGN4X, XG, GYG2) 0.260198947575483 18 0.226554275769143 0.942229983689961 759 0.265752765883634 3 2 1 -6.86053507811219 LTS-036 chrX 5808872 6968011 1159140 * c(MIR4770, VCX3A, NLGN4X, PUDP) 0.43 1 NA 0.960561601683507 135 0.242709203896687 3 3 0 -5.76676004390841 LTS-036 chrX 6968012 9686187 2718176 * c(MIR4767, FAM9A, FAM9B, VCX, ANOS1, STS, VCX3B, VCX2, TBL1X, MIR651, PUDP, PNPLA4) 0.411882055785628 24 0.10486637459996 0.908309290965482 649 0.211055267959064 3 2 1 -7.09324239520312 LTS-036 chrX 9686188 9915849 229662 * c(SHROOM2, GPR143, TBL1X) 0 1 NA 0.865846323561732 237 0.183349393821049 3 3 0 -5.82087423200368 LTS-036 chrX 9915850 12725717 2809868 * c(CLDN34, MSL3, CLCN4, AMELX, HCCS, SHROOM2, ARHGAP6, MID1, WWC3, FRMPD4) 0.218403099755736 6 0.253205581823677 0.930649667607593 1043 0.225836330647751 3 3 0 -6.9189215630725 LTS-036 chrX 12725718 13613120 887403 * c(GS1-600G8.3, LINC01203, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, ATXN3L, FRMPD4) 0.433985561694232 9 0.143914712397463 0.809922265285824 590 0.141555084802075 2 1 1 -7.17833832049448 LTS-036 chrX 13613121 14877404 1264284 * c(TCEANC, FANCB, EGFL6, GLRA2, GPM6B, GEMIN8, TRAPPC2, OFD1, RAB9A) 0.129368399732398 8 0.234259928894624 0.915010114321411 674 0.233255815654624 3 3 0 -6.7936909718882 LTS-036 chrX 14877405 15266819 389415 * c(ASB9, MOSPD2, FANCB) 0.445 1 NA 0.920726517240578 160 0.17351677539748 3 3 0 -5.78905167816504 LTS-036 chrX 15266820 32381112 17114293 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ASB11, ASB9, ZNF645, MAGEB6, DDX53, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, GK, MAGEB18, GRPR, SH3KBP1, CA5BP1, DCAF8L2, MAGEB5, MAP3K15, YY2, NA NA NA NA NA NA NA NA NA LTS-036 MAGEB1, MAGEB2, MAGEB3, MAGEB4, NHS, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, MAGEB17, BMX, SMS, SCARNA23, CDKL5, LOC729609, ZFX, APOO, S100G, CXorf21, KLHL15, ZRSR2, PIR, INE2, AP1S2, REPS2, SYAP1, PCYT1B) 0.399025436045587 76 0.137235205958187 0.92029629168098 7529 0.211617025241479 3 2 1 -7.46490209487991 LTS-036 NA NA NA NA LTS-036 chrX 32381113 32382692 1580 * DMD NA 0 NA 0.797 1 NA NA NA NA NA LTS-036 chrX 32382693 33059862 677170 * DMD 0.459 1 NA 0.727641417025245 202 0.147287054772714 2 2 0 -5.76900208580633 LTS-036 chrX 33059863 33146149 86287 * DMD NA 0 NA 0.877 1 NA NA NA NA NA LTS-036 chrX 33146150 35821464 2675315 * c(MAGEB16, FAM47A, FAM47B, DMD, TMEM47) 0.441662960485233 5 0.0405339363990225 0.928950957766682 227 0.175533530779887 3 2 1 -8.87542357547254 LTS-036 chrX 35821465 36162664 341200 * c(MAGEB16, NA, CFAP47) 0 1 NA 0.989682066976495 163 0.190968875907969 3 3 0 -5.76580315437566 LTS-036 chrX 36162665 39520562 3357898 * c(CYBB, HYPM, LINC01281, CFAP47, LANCL3, FTH1P18, FAM47C, OTC, PRRG1, MID1IP1, RPGR, NA, DYNLT3, TSPAN7, XK, SRPX, SYTL5) 0.0908230819721017 9 0.192844785024411 0.966105907534714 1188 0.256697856163167 3 3 0 -6.73851746864295 LTS-036 chrX 39520563 39933339 412777 * BCOR 0.499 1 NA 0.939701819587145 135 0.226679739892236 3 3 0 -5.77067326641446 LTS-036 chrX 39933340 46719589 6786250 * c(LOC100132831, ATP6AP2, FUNDC1, CXorf38, DDX3X, GPR82, GPR34, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, NDP, BCOR, KRBOX4, CHST7, NYX, RP2, DUSP21, ZNF674, KDM6A, CXorf36, EFHC2, PPP1R2P9, USP9X, SLC9A7, CASK, MED14) 0.391010624417699 26 0.149110970550331 0.928644414261031 2359 0.202533876317751 3 2 1 -6.99208949433903 LTS-036 chrX 46719590 46736911 17322 * RP2 NA 0 NA 1.277 1 NA NA NA NA NA LTS-036 chrX 46736912 48847497 2110586 * c(SNORA11C, HDAC6, UXT-AS1, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, ELK1, FTSJ1, GATA1, PCSK1N, SSX6, SSX9, ERAS, ZNF81, ARAF, KCND1, SPACA5, CXXC1P1, GLOD5, TBC1D25, CDK16, CFP, NDUFB11, OTUD5, GRIPAP1, ZNF630, RBM3, RP2, WDR13, PORCN, SSX1, SSX5, SUV39H1, SYN1, TIMP1, LINC01545, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, USP11, RBM10, UXT, INE1, RGN, SLC38A5, JADE3) 0.410586371088078 17 0.16394049314955 0.982322413479623 3257 0.202567258577259 3 2 1 -6.80924385154646 LTS-036 chrX 48847498 49047325 199828 * c(WDR45, PRAF2, GPKOW, PRICKLE3, PLP2, GRIPAP1, SYP, TFE3, MAGIX, CCDC120) 0 1 NA 0.995221181287555 563 0.178673610947987 3 3 0 -5.76611931593798 LTS-036 chrX 49047326 53114327 4067002 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, CCDC22, USP27X, MIR188, SPANXN5, FOXP3, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, TSPYL2, NA, GAGE2B, GAGE13, XAGE1B, SYP, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, CACNA1F, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.14248522233835 23 0.194099603622682 0.984105746782282 1869 0.229094815690103 3 3 0 -6.75977830793702 LTS-036 chrX 53114328 53262303 147976 * c(IQSEC2, TSPYL2, KDM5C) 0.483 1 NA 1.00515556211373 240 0.190712274200387 3 3 0 -5.7667958965771 LTS-036 chrX 53262304 53349651 87348 * IQSEC2 NA 0 NA 0.986077984607023 151 0.225390243868063 3 NA NA -5.76456133509309 LTS-036 chrX 53349652 57146035 3796384 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, KLF8, FOXR2, PAGE3, RIBC1, USP51, SPIN3, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, MAGEH1, UBQLN2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, UQCRBP1, PFKFB1, GNL3L, FAM120C, LINC01420, WNK3, SNORA11, TRO, SMC1A, TSR2, FAM104B, PAGE5) 0.303038500857315 22 0.134751334234293 0.934689690188067 2919 0.196103162446057 3 2 1 -6.91308435657377 LTS-036 chrX 57146036 57937169 791134 * c(FAAH2, ZXDB, SPIN2B, SPIN2A, ZXDA) NA 0 NA 0.924845101202345 342 0.189686415964257 3 NA NA -5.79987600255572 LTS-036 chrX 61999880 63413032 1413153 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0 1 NA 0.955164216228628 393 0.221476201681826 3 3 0 -5.7711421245183 LTS-036 chrX 63413033 70361967 6948935 * c(MIR676, VSIG4, AMER1, OTUD6A, ASB12, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, FAM155B, YIPF6, SNX12, ZC3H12B, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ARR3, MIR223, FOXO4, MSN, OPHN1, P2RY4, PDZD11, GDPD2, MTMR8, ZC4H2, TEX11, EDA2R, PJA1, LAS1L, FRMD8P1, SLC7A3, STARD8, HEPH, MED12) 0.352088401967738 36 0.201132499958815 0.922462626330086 3419 0.23374969874443 3 2 1 -6.95216800788911 LTS-036 chrX 70361968 70445407 83440 * c(GJB1, NLGN3, BCYRN1, MED12) 0 1 NA 0.943278702930461 141 0.265961533658569 3 3 0 -5.76514693791527 LTS-036 chrX 70445408 73066439 2621032 * c(CDX4, MAP2K4P1, ITGB1BP2, INGX, CXCR3, RGAG4, NHSL2, PABPC1L2A, FLJ44635, LINC00891, RPS26P11, CITED1, NAP1L2, NONO, PHKA1, PIN4, CHIC1, ERCC6L, HDAC8, BCYRN1, RPS4X, PABPC1L2B, NAP1L6, FAM226B, TAF1, XIST, OGT, ZMYM3, TSIX, ACRC) 0.168782650217687 14 0.210924651928618 0.925086564974528 2264 0.233521284446277 3 3 0 -6.86321569309 LTS-036 chrX 73066440 73641569 575130 * c(MIR374B, FTX, MIR374C, ZCCHC13, MIR374A, JPX, SLC16A2, MIR545, MIR421, XIST) 0.388 1 NA 0.957359869487036 219 0.205525844337671 3 3 0 -5.76689655940385 LTS-036 chrX 73641570 101439808 27798239 * c(ARMCX4, UBE2DNL, MIR4328, RPL36A-HNRNPH2, CYSLTR1, CHM, DACH2, COX7B, APOOL, HDX, UPRT, MAGEE2, TCEAL2, PABPC5, CSTF2, CYLC1, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DRP2, ZCCHC5, ABCB7, CENPI, BRWD3, NOX1, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, LPAR4, TTC3P1, FAM133A, RPA4, HNRNPH2, KIAA2022, BEX5, SATL1, ARL13A, XKRX, PGAM4, XRCC6P5, NAP1L3, MIR384, TBX22, RLIM, PBDC1, ARMCX1, ARMCX3, TAF9B, NA NA NA NA NA NA NA NA NA LTS-036 PGK1, CPXCR1, ATP7A, TAF7L, ARMCX6, POU3F4, ATRX, NXF5, KLHL4, PCDH19, MAGEE1, TMEM35A, RPL36A, TNMD, BRDTP1, SH3BGRL, SLC16A2, BTK, TSPAN6, ZNF711, HMGN5, TRMT2B, POF1B, MAGT1, ZMAT1, GPR174, FGF16, TGIF2LX, SYTL4, ITM2A, ARMCX2) 0.338062053924008 80 0.187377655865692 0.907050694040169 6828 0.264350344455133 3 2 1 -7.75875618018879 LTS-036 NA NA NA NA LTS-036 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.085 1 NA NA NA NA NA LTS-036 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.338695510045558 43 0.374676517547833 1 NA NA -5.82343889946479 LTS-036 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.869 1 NA NA NA NA NA LTS-036 chrX 101768565 112024157 10255593 * c(LINC00630, TRPC5OS, MIR4329, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, AMOT, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, LHFPL1, SLC25A53, LINC00890, GLRA4, PAK3, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF4, NA NA NA NA NA NA NA NA NA LTS-036 NXF3, TEX13B, TEX13A, BEX4, PRPS1, TCEAL7, PSMD10, RGAG1, ZCCHC18, ARMCX5, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.345263057137109 26 0.190419233837826 0.923110116279542 5893 0.20432316852769 3 2 1 -7.13392868789982 LTS-036 NA NA NA NA LTS-036 chrX 112024158 113961410 1937253 * c(MIR1912, MIR1298, MIR1264, MIR764, AMOT, HTR2C, SNORA35) 0 1 NA 0.944711843384797 99 0.21696392196479 3 3 0 -5.78766642686711 LTS-036 chrX 113961411 115305810 1344400 * c(MIR1911, RBMXL3, AGTR2, HTR2C, IL13RA2, LUZP4, PLS3, MIR448, LRCH2) 0.184608178542123 14 0.241159117140986 0.927609524077769 587 0.207261103911685 3 3 0 -6.84209887180021 LTS-036 chrX 115305811 115590299 284489 * c(SLC6A14, AGTR2) 0.474 1 NA 0.942837448505241 77 0.259453577581862 3 3 0 -5.7671261122298 LTS-036 chrX 115590300 117032656 1442357 * c(SLC6A14, CT83, KLHL13) 0.491 1 NA 0.903455139520528 85 0.174654787159903 3 3 0 -5.92152329346179 LTS-036 chrX 117032657 118925181 1892525 * c(MIR1277, SLC25A5-AS1, PGRMC1, DOCK11, ZCCHC12, SLC25A43, SEPT6, SNORA69, SLC25A5, SOWAHD, IL13RA1, WDR44, NKRF, KIAA1210, RPL39, CXorf56, UBE2A, MIR766, LONRF3, KLHL13) 0.445414740925739 29 0.0831472816353593 0.872839089269708 1597 0.199622431814444 3 2 1 -7.7260209539899 LTS-036 chrX 118925182 119048786 123605 * c(AKAP14, NDUFA1, RPL39, UPF3B, RNF113A) 0 1 NA 0.80940130051443 145 0.198893420264525 2 2 0 -5.79225319661015 LTS-036 chrX 119048787 129506779 10457993 * c(ZBTB33, TEX13C, PRR32, TENM1, STAG2, UTP14A, DCAF12L1, ACTRT1, AKAP14, RHOXF1, NKAPP1, ELF4, ATP1B4, CT47A11, GLUD2, GRIA3, MCTS1, C1GALT1C1, XIAP, DCAF12L2, LAMP2, SH2D1A, OCRL, ZDHHC9, SASH3, TMEM255A, ZNF280C, THOC2, BCORL1, CT47B1, CT47A7, SMARCA1, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, XPNPEP2, NKAP, CUL4B, APLN, SLC25A14, AIFM1, RAB33A) 0.244036097750174 29 0.214566936976203 0.870564434418109 3469 0.246399856236419 3 2 1 -7.96828870695189 LTS-036 chrX 129506780 130223137 716358 * c(ENOX2, GPR119, ARHGAP36, RBMX2, SLC25A14) 0.44 1 NA 0.899469945451484 313 0.199515511419851 3 3 0 -5.83243288700927 LTS-036 chrX 130223138 131231257 1008120 * c(ARHGAP36, FIRRE, OR13H1, IGSF1, STK26, FRMD7) 0.456966916545025 11 0.0287579238092422 0.902213193889303 381 0.187465943529547 2 1 1 -9.9772157464352 LTS-036 chrX 131231258 131518737 287480 * c(MBNL3, RAP2C, FRMD7) 0 1 NA 0.882599086544012 223 0.238122831519707 3 3 0 -5.79393312908195 LTS-036 chrX 131518738 135496398 3977661 * c(MIR450B, LINC00633, LINC00629, HS6ST2-AS1, SLC9A6, PLAC1, ADGRG4, FAM122B, FAM122C, INTS6L, ZNF449, GPC4, FHL1, FAM127B, GPC3, HPRT1, CCDC160, SMIM10L2A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, TFDP3, CT45A6, CT45A1, CT55, MIR450A1, SAGE1, MBNL3, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, SMIM10, SMIM10L2B, MIR542, CT45A2, ZNF75D, MAP7D3, USP26, PHF6, MIR503HG, FAM127A, HS6ST2, NA NA NA NA NA NA NA NA NA LTS-036 MMGT1) 0.0347876861411542 25 0.135466256561059 0.882037096275388 2214 0.663667812493187 3 3 0 -6.94415940971176 LTS-036 NA NA NA NA LTS-036 chrX 135496399 135961587 465189 * c(MIR934, LINC00892, ADGRG4, SNORD61, RBMX, HTATSF1, VGLL1, BRS3, ARHGEF6, CD40LG) 0.212 1 NA 0.830438773226095 465 0.161344883728541 2 2 0 -5.9899629398243 LTS-036 chrX 135961588 142711281 6749694 * c(FGF13-AS1, MIR320D2, CDR1, SLITRK4, SPANXN3, MAGEC3, LINC00889, NA, NA, F9, FGF13, LDOC1, RBMX, ATP11C, LINC00632, CXorf66, LOC389895, MCF2, SPANXN4, MAGEC2, MIR504, MIR505, SPANXA2-OT1, SPANXC, SOX3, SRD5A1P1, ZIC3, GPR101, MAGEC1) 0.337836950756439 15 0.16452355454463 0.889937780605538 1141 0.274236729308066 3 2 1 -7.14916437840973 LTS-036 chrX 142711282 142711422 141 * SLITRK4 NA 0 NA 0.482 1 NA NA NA NA NA LTS-036 chrX 142711423 144911352 2199930 * c(SLITRK4, UBE2NL, SPANXN1, SPANXN2, SLITRK2, TMEM257) 0.352011645881231 14 0.101764001925593 0.761592188991266 453 0.166977123184932 2 1 1 -6.96737320692584 LTS-036 chrX 144911353 145075713 164361 * TMEM257 NA 0 NA 0.989 1 NA NA NA NA NA LTS-036 chrX 145075714 150576030 5500317 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, LINC00894, MIR2114, MIR514B, MIR4330, MAMLD1, MAGEA8-AS1, FMR1NB, VMA21, FMR1, AFF2, HMGB3, IDS, MAGEA8, MAGEA11, MTM1, CXorf40B, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, CD99L2, TMEM185A, MTMR1, CXorf40A, GPR50) 0.344169446513217 18 0.171419839685809 1.04107680408136 1759 0.260643159711595 3 2 1 -6.94125934947097 LTS-036 chrX 150576031 151562022 985992 * c(MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, MIR105-1, MAGEA4, MAGEA5, MAGEA10, MIR452, MIR767, PRRG3, FATE1) 0.345365385935626 15 0.186429611381883 1.11522563619477 651 0.252905996634403 4 2 2 -6.85025528783105 LTS-036 chrX 151562023 151821277 259255 * c(GABRA3, MIR105-2, GABRQ) 0.003 1 NA 1.163154237858 50 0.244394492071941 4 4 0 -5.77303157539711 LTS-036 chrX 151821278 152083089 261812 * c(CSAG4, CETN2, CSAG1, MAGEA3, MAGEA6, MAGEA12, NSDHL, GABRQ, ZNF185) 0.0669675521599432 13 0.197868837675559 1.06425336528404 307 0.309880824368599 3 3 0 -6.76815612690409 LTS-036 chrX 152083090 152089039 5950 * ZNF185 0.488 1 NA 1.16837188859059 31 0.182338224069966 4 4 0 -5.76471285423879 LTS-036 chrX 152089040 152818435 729396 * c(NA, NA, ZNF275, TREX2, PNMA5, ZFP92, PNMA3, MAGEA1, ATP2B3, HAUS7, BGN, ZNF185) 0.412763102286456 12 0.13206136658938 1.11329827326346 660 0.228762659205043 4 2 2 -6.84453628313154 LTS-036 chrX 152818436 152853362 34927 * ATP2B3 0.396 1 NA 1.12684576059611 129 0.182531580773441 4 4 0 -5.76942057549989 LTS-036 chrX 152853363 153051907 198545 * c(BCAP31, PNCK, DUSP9, ABCD1, SRPK3, IDH3G, PLXNB3, SLC6A8, FAM58A) 0.0453884411940938 9 0.156303390878125 1.10051915452203 705 0.27615978633219 4 4 0 -6.78853077900388 LTS-036 chrX 153051908 153175586 123679 * c(IDH3G, L1CAM, ARHGAP4, AVPR2, PDZD4, SSR4) 0.425 1 NA 1.08257936197049 457 0.198887640884232 3 3 0 -5.78520723648729 LTS-036 chrX 153175587 154505745 1330159 * c(SMIM9, CMC4, MIR718, MIR3202-2, MIR3202-1, RAB39B, CLIC2, GAB3, TEX28, DKC1, DNASE1L1, EMD, F8, FLNA, G6PD, OPN1MW, GDI1, SNORA70, HCFC1, CTAG2, IRAK1, ARHGAP4, MECP2, MPP1, MTCP1, ATP6AP1, PLXNA3, OPN1LW, RENBP, FAM3A, RPL10, FUNDC2, SNORA36A, SNORA56, TAZ, VBP1, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.329176500868537 14 0.147530682225096 1.10794571462696 3036 0.354797610371487 4 3 1 -6.84545661417779 LTS-036 chrX 154505746 154774986 269241 * c(CLIC2, TMLHE) NA 0 NA 0.978738989525515 131 0.256165637245174 3 NA NA -5.76446304449576 LTS-036 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.137510811580952 25 0.127523814769373 0 NA NA -8.12874437205197 LTS-036 chrY 13309514 13310602 1089 * character(0) 0.333 1 NA 0.33926126017805 7 0.233597537495175 1 1 0 -5.76549443159011 LTS-036 chrY 13310603 21154426 7843824 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.186521425285312 5 0.158300979150478 0.442543035867817 16 0.419608468297134 1 1 0 -6.79446470569796 LTS-036 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 0.61698912945138 3 0.0548482755730145 2 NA NA -5.76485907878618 LTS-036 chr1 14653 1639066 1624414 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, CDK11A, SLC35E2B, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, NA NA NA NA NA NA NA NA NA LTS-037 ATAD3B, PLEKHN1, PERM1, MMP23B, MMP23A, TNFRSF18, ISG15, CDK11B) 0.35062723426869 48 0.0760066923845134 0.998272315381334 3103 0.289641392421657 3 2 1 -6.75299740382697 LTS-037 NA NA NA NA LTS-037 chr1 1639067 1639575 509 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.558 1 NA NA NA NA NA LTS-037 chr1 1639576 1646772 7197 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.369893231053337 39 0.308019804119953 1 NA NA -5.76643356688994 LTS-037 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.896 1 NA NA NA NA NA LTS-037 chr1 1647807 2542834 895028 * c(LOC100129534, NA, RER1, LOC115110, FAM213B, CALML6, FAAP20, GABRD, GNB1, TMEM52, HES5, PEX10, PANK4, PRKCZ, SKI, NADK, CDK11A, SLC35E2B, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, CDK11B, SLC35E2) 0.36998952147131 75 0.0639802953900511 0.968150464887706 1760 0.24815114801318 3 2 1 -6.77873916295609 LTS-037 chr1 2542835 2543495 661 * MMEL1 NA 0 NA 1.122 1 NA NA NA NA NA LTS-037 chr1 2543496 6662158 4118663 * c(LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, ACOT7, TPRG1L, ACTRT2, CCDC27, DFFB, MEGF6, ICMT, CHD5, NPHP4, ARHGEF16, LOC284661, ZBTB48, C1orf174, GPR153, SMIM1, RNF207, HES3, LINC00982, WRAP73, HES2, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, MIR551A, TP73, LINC01346, MMEL1, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, CEP104, KLHL21) 0.353499997281292 88 0.081800435568175 1.04378836892549 3264 0.332076995823624 3 2 1 -6.74191787257864 LTS-037 chr1 6662159 16802550 10140392 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, CROCCP3, FHAD1, RBP7, CLCN6, CLCNKA, CLCNKB, LRRC38, AADACL3, ARHGEF19, CORT, C1orf127, PHF13, C1orf64, SLC2A7, DFFA, EPHA2, TMEM201, TMEM51-AS1, ENO1, CLSTN1, SPEN, KIF1B, PLEKHM2, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, SZRD1, FBXO2, FBXO6, HSPB7, SLC25A34, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, NA NA NA NA NA NA NA NA NA LTS-037 PRAMEF10, FAM131C, TNFRSF9, DRAXIN, SPATA21, CENPS, TMEM82, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, HNRNPCL2, UQCRHL, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, FBXO42, FBLIM1, CASZ1, TMEM51, VPS13D, NECAP2, DNAJC11, CTNNBIP1, AGTRAP, DISP3, MIIP, RSC1A1, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, FLJ37453, CA6, ZBTB17, PRDM2, EFHD2, RSG1, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, DDI2, LZIC, PER3, KIAA2013, THAP3, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, KLHL21, MFN2) 0.35140093432949 350 0.0719695746876444 0.989659399732408 10805 2.70537335737787 3 2 1 -6.74330689422973 LTS-037 NA NA NA NA LTS-037 chr1 16802551 16802964 414 * CROCCP3 NA 0 NA 0.852 1 NA NA NA NA NA LTS-037 chr1 16802965 16978916 175952 * c(MST1P2, CROCCP3, NBPF1, CROCCP2) 0.365207738807856 34 0.0963027987924467 0.808496348909638 175 0.387072662823686 3 2 1 -6.775196801717 LTS-037 chr1 16978917 17009683 30767 * character(0) NA 0 NA 2.145 1 NA NA NA NA NA LTS-037 chr1 17009684 17030650 20967 * ESPNP 0.34324847599996 6 0.0834587722571251 2.16550011884544 96 0.761236934825802 9 6 3 -6.73424758506987 LTS-037 chr1 17030651 17033735 3085 * ESPNP NA 0 NA 1.424 1 NA NA NA NA NA LTS-037 chr1 17033736 17198471 164736 * c(MST1L, ESPNP, CROCC) 0.360939201383551 28 0.0895908616253493 1.07210826342758 204 0.511139881500504 3 2 1 -6.73371558140201 LTS-037 chr1 17198472 17277562 79091 * CROCC 0.313978477974711 9 0.097710030191378 1.78585001809391 90 0.672424592489202 7 5 2 -6.74529660996017 LTS-037 chr1 17277563 17277587 25 * CROCC NA 0 NA 1.023 1 NA NA NA NA NA LTS-037 chr1 17277588 19237989 1960402 * c(MIR4695, PADI2, IFFO2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.361995312110526 81 0.0577164230858701 1.07531058293973 1845 0.476473782766461 3 2 1 -6.74378834660611 LTS-037 chr1 19237990 19238452 463 * IFFO2 NA 0 NA 0.875 1 NA NA NA NA NA LTS-037 chr1 19238453 20680760 1442308 * c(LOC100506730, MINOS1-NBL1, IFFO2, VWA5B1, UBXN10, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, TMCO4, PLA2G2D, PLA2G2E, HTR6, PLA2G2C, MINOS1, NBL1, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, RPS14P3, PLA2G2F, CAPZB, AKR7A2) 0.36851742284771 49 0.0526037766032551 0.999669064769708 2193 0.230236321810537 3 2 1 -6.76109586800139 LTS-037 chr1 20680761 20809806 129046 * c(VWA5B1, LINC01141, CAMK2N1) 0 1 NA 1.06001582490827 23 0.758898304362078 3 3 0 -5.76453187319744 LTS-037 chr1 20809807 24746240 3936434 * c(MIR3115, MIR4253, LOC100506801, TCEB3-AS1, MIR4684, MIR378F, CELA3A, HNRNPR, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, KDM1A, CELA3B, ALPL, FUCA1, GALE, MDS2, LOC284632, LINC00339, HMGCL, HSPG2, HTR1D, ID3, SH2D5, LDLRAD2, HP1BP3, WNT4, CAMK2N1, ASAP3, PNRC2, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RPL11, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, NA NA NA NA NA NA NA NA NA LTS-037 LUZP1, MUL1, ZNF436, USP48, NBPF3, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.328345565520435 136 0.101542528948147 1.01642285151759 5393 0.281875445940843 3 2 1 -6.79586167584663 LTS-037 NA NA NA NA LTS-037 chr1 24746241 24766548 20308 * NIPAL3 NA 0 NA 1.32 1 NA NA NA NA NA LTS-037 chr1 24766549 24972559 206011 * c(RCAN3AS, SRRM1, RCAN3, NCMAP, NIPAL3) 0.297528098002041 7 0.0185690474664029 1.27931588241036 334 0.277724658465992 4 3 1 -7.10421504289945 LTS-037 chr1 24972560 24973242 683 * SRRM1 NA 0 NA 1.01 1 NA NA NA NA NA LTS-037 chr1 24973243 25599166 625924 * c(SRRM1, CLIC4, SYF2, RSRP1, RHD, RUNX3) 0.370906090456564 3 0.0190787840283389 0.963665429214863 447 0.223353963739278 3 2 1 -6.94671424649934 LTS-037 chr1 25599167 25656954 57788 * c(RSRP1, RHD) NA 0 NA 1.96581655936395 73 0.424483926528766 6 NA NA -5.76473757391565 LTS-037 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.991 1 NA NA NA NA NA LTS-037 chr1 25666924 27648907 1981984 * c(MIR1976, MIR3917, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, EXTL1, WDTC1, TMEM50A, ZNF683, LDLRAP1, SFN, HMGN2, CATSPER4, TRNP1, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, LOC646471, CEP85, SLC9A1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NR0B2, TRIM63, UBXN11) 0.358021308143242 59 0.0557166686495195 1.00412695801646 3208 0.236288060126027 3 2 1 -6.74630018611662 LTS-037 chr1 27648908 27657100 8193 * c(ACTG1P20, TMEM222) NA 0 NA 2.152 1 NA NA NA NA NA LTS-037 chr1 27657101 27995937 338837 * c(WASF2, FGR, IFI6, AHDC1, GPR3, CD164L2, TMEM222, SYTL1, FCN3, MAP3K6) 0.455906452800995 9 0.0357910603363466 1.27069374844691 756 0.255453606766598 4 2 2 -6.90919259700851 LTS-037 chr1 27995938 28052360 56423 * IFI6 NA 0 NA 0.512 1 NA NA NA NA NA LTS-037 chr1 28052361 28473882 421522 * c(FAM76A, EYA3, STX12, SMPDL3B, PPP1R8, XKR8, PTAFR, RPA2, SCARNA1, THEMIS2) 0.31226996523426 12 0.0658944863651985 0.921081653577312 706 0.224380542280304 3 2 1 -7.09588242467226 LTS-037 chr1 28473883 43885939 15412057 * c(FAM229A, MATN1-AS1, LOC100129924, NFYC-AS1, MIR4255, MIR4254, MIR3659, MIR3605, TMEM35B, SLFNL1-AS1, GJA9-MYCBP, MIR4420, PTPRU, MIR5581, ZMPSTE24, PPIE, PPIH, CAP1, KHDRBS1, GMEB1, SF3A3, EBNA1BP2, RCC1, MED8, SMIM12, AZIN2, TMEM54, ERMAP, CSMD2, RAB42, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, TMEM125, COL8A2, COL9A2, COL16A1, CSF3R, DCDC2B, ZNF362, LINC01225, MANEAL, NA NA NA NA NA NA NA NA NA LTS-037 CLDN19, CFAP57, C1orf210, CTPS1, CITED4, EDN2, PHC2, AGO3, AGO4, TXLNA, SLFNL1, EPB41, AK2, FABP3, FHL3, DNAJC8, FOXJ3, SCMH1, NCDN, SZT2, MACF1, KPNA6, FNDC5, MYCBP, HEYL, AGO1, RNU11, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, LINC01226, RSPO1, EPHA10, RIMKLA, GRIK3, GUCA2A, GUCA2B, GNL2, HCRTR1, HDAC1, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, SERINC2, BMP8A, INPP5B, SVBP, LCK, TMEM200B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CSMD2-AS1, MIR30C1, MIR30E, MATN1, MPL, SLC2A1-AS1, FAM183A, MTF1, MYCL, NDUFS5, NFYC, YBX1, OPRD1, ZNF691, MECR, UTP11, HPCAL4, YTHDF2, ZCCHC17, POU3F1, MED18, TRIT1, RHBDL2, ADPRHL2, TRNAU1AP, C1orf109, BSDC1, TMEM39B, CDCA8, EVA1B, TRIM62, PEF1, PPT1, MAP7D1, IQCC, TMEM234, PSMB2, PTAFR, ADGRB2, KIAA1522, DLGAP3, HIVEP3, RBBP4, RLF, CLSPN, OXCT2, RRAGC, TINAGL1, P3H1, SFPQ, SRSF4, KIAA0754, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SMAP2, S100PBP, MEAF6, EXO5, ELOVL1, MRPS15, MARCKSL1, SLC2A1, ZFP69B, ZBTB8A, LOC653160, BMP8B, PHACTR4, SNORA44, SNORA55, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, TIE1, ZBTB8B, LINC01137, PPIEL, CCDC30, ZSCAN20, DNALI1, LAPTM5, C1orf50, CCDC28B, NKAIN1, AKIRIN1, YRDC, PPCS, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, PTP4A2, SYNC, TSSK3, SESN2, STK40, SNHG3, ZMYND12, NT5C1A, FAM167B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MFSD2A, LSM10, C1orf94, SNHG12, YARS, EIF3I, PABPC4, SPOCD1, KCNQ4, ZMYM4, ZMYM6, ATPIF1, SNRNP40, SDC3, PUM1, RIMS3, CDC20, THRAP3) 0.349247305996655 192 0.0749117672898617 1.00540380197919 16647 0.2647465682708 3 2 1 -6.81375006332008 LTS-037 NA NA NA NA LTS-037 chr1 43885940 44365399 479460 * c(KDM4A-AS1, SZT2, PTPRF, ST3GAL3, HYI, KDM4A) 0.453194021644997 18 0.0368098807422876 1.38722750926501 830 0.294975107599296 4 2 2 -6.8645075849117 LTS-037 chr1 44365400 89435256 45069857 * c(EFCAB14-AS1, LINC01135, ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR761, MIR3117, MIR3671, LINC01364, MKNK1-AS1, LOC100507564, LOC100507634, FPGT-TNNI3K, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR4423, MIR548AP, MIR5584, NEGR1-IT1, ZRANB2-AS2, LINC00853, TSPAN1, PDZK1IP1, PATJ, CDKN2C, AKR1A1, TESK2, LRRC41, IFI44, IFI44L, KIF2C, DNAJB4, FAF1, HHLA3, KTI12, TOE1, MYSM1, OSBPL9, OMA1, LRRC42, SSX2IP, NA NA NA NA NA NA NA NA NA LTS-037 CLCA1, PLK3, CCDC163, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, DMBX1, TCEANC2, PODN, C1orf87, KLF17, CPT2, CRYZ, SAMD13, C1orf52, UBE2U, CTBS, KNCN, MOB3C, GLIS1, MGC27382, CTH, IL23R, CCDC24, BTBD19, CCDC17, CYP2J2, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, DPH2, ELAVL4, LINC00466, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, TCTEX1D1, SLC44A5, AK4, EPS15, FAAH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CLCA4, TTC39A, FOXE3, USP33, FOXD2, MAST2, SLC35D1, ADGRL2, ZCCHC11, USP24, ITGB3BP, LPAR3, DDAH1, SSBP3, MCOLN2, COL24A1, PCSK9, ST6GALNAC3, NEGR1, PARS2, MMACHC, ZZZ3, ACOT11, CYP4X1, SERBP1, AK5, BEST4, SNORD45B, SNORD45A, SNORD55, RNF11, FOXD3, ANGPTL3, GNG5, CYP4A22, C1orf185, GPX7, GTF2B, ALG6, FAM151A, LINC01140, C1orf228, ACADM, TCTEX1D4, FAM159A, CYR61, IL12RB2, IPP, JAK1, JUN, TEX38, MROH7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIGA1, NSUN4, TRABD2B, LDLRAD1, SKINT1L, UOX, LEPR, LINC01144, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, LHX8, LINC01555, ZYG11A, MSH4, MUTYH, NASP, NFIA, NRDC, ROR1, ORC1, PRDX1, TXNDC12, TNNI3K, SH3GLB1, TMEM69, MRPL37, HOOK1, PDE4B, HSPB11, CMPK1, PGM1, PIN1P1, ATP6V0B, LURAP1, YIPF1, SPATA6, L1TD1, ZNHIT6, LEPROT, GIPC2, C1orf123, TTC22, RNF220, RAVER2, ECHDC2, FGGY, MCOLN3, POMGNT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PRKAA2, LRRC40, DEPDC1, PRKACB, NDC1, PKN2, DMAP1, GNG12, KYAT3, PTGER3, PTGFR, ODF2L, LRRC7, ZSWIM5, CACHD1, MIER1, DNASE2B, RAB3B, RABGGTB, GPBP1L1, CYB5RL, RPE65, RPS8, SCP2, DMRTB1, DMRTA2, ADGRL4, LOC646626, ATPAF1, ST3GAL3, STIL, SLC1A7, COA7, SLC6A9, TAL1, SNORD45C, TTC4, RPS15AP10, FAAHP1, HSD52, C8A, C8B, UQCRH, UROD, USP1, LRP8, BSND, ERI3, DLEU2L, TMEM53, HECTD3, BEND5, ZYG11B, TTLL7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, TM2D1, SYDE2, SGIP1, RAD54L, EFCAB7, FOXD2-AS1, HPDL, AGBL4, ATG4C, PRPF38A, PIK3R3, LMO4, DOCK7, MKNK1, PLPP3, PTCH2, B4GALT2, FPGT, FUBP1, EIF2B3, BCL10, ARTN, DIRAS3, BTF3L4, NEXN, SRSF11, ZFYVE9, SELENOF, ZRANB2, SNORD46, SNORD38A, SNORD38B, TMEM59, CLCA3P, CLCA2, HS2ST1, IPO13, EFCAB14, DNAJC6) 0.355765368790975 570 0.0658588150272115 1.02833870289536 25433 0.29891216845971 3 2 1 -6.73581844926622 LTS-037 NA NA NA NA LTS-037 chr1 89435257 89445118 9862 * KYAT3 NA 0 NA 0.835 1 NA NA NA NA NA LTS-037 chr1 89445119 93576192 4131074 * c(GLMN, GBP4, GBP5, GBP6, HFM1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.357696098951434 17 0.108401181619347 0.94641330251348 2668 0.257190555566089 3 2 1 -6.98252951254643 LTS-037 chr1 93576193 93580152 3960 * MTF2 NA 0 NA 1.272 1 NA NA NA NA NA LTS-037 chr1 93580153 120927081 27346929 * c(MIR942, MIR760, LINC01349, LOC100129046, LOC100129138, LINC01160, LOC100129620, CCDC18-AS1, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, OLFM3, CNN3, MAB21L3, SLC44A3, ATXN7L2, C1orf194, LRRC39, HSD3BP4, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, NA NA NA NA NA NA NA NA NA LTS-037 CSF1, SYT6, TMEM56, NBPF4, SLC30A7, CHIAP2, DBT, DENND2C, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, DR1, S1PR1, CELSR2, ALG14, SPAG17, HIPK1, EXTL2, F3, FCGR1B, MTF2, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKR7A2P1, AKNAD1, ALX3, RWDD3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DNTTIP2, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, HIST2H2BA, CCDC18, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, FRRS1, MIR137HG, MIR137, MIR197, MOV10, FLJ31662, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, TMED5, HAO2, SNX7, ATP5F1, TRIM33, DPH5, GPR88, TRMT13, RSBN1, GDAP2, FAM46C, PALMD, FNBP1L, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, PTBP2, ABCD3, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, MFSD14A, RBM15, DCLRE1B, ACTG1P4, NBPF6, FAM72B, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, MIR553, TSHB, LOC729970, LOC729987, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, VANGL1, CAPZA1, GPR61, REG4, BCAR3, PROK1, CASQ2, TTF2, PSRC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ATP1A1-AS1, STRIP1, CDC14A, RTCA, ZNF697, SLC16A4, CD2, CD101, ARHGAP29, DNAJA1P5, CD53, CD58, LRIG2, PLPPR4) 0.351064358882839 344 0.0707360399893851 1.00953151540516 17375 0.342339334393556 3 2 1 -6.79170172038698 LTS-037 NA NA NA NA LTS-037 chr1 120927082 121313547 386466 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.973452555041545 79 0.253182815002122 3 NA NA -5.77537153973192 LTS-037 chr1 143912360 144013853 101494 * FAM72D 0.388 1 NA 0.896686761875989 5 0.336915122842534 3 3 0 -5.77449751976066 LTS-037 chr1 144013854 145115810 1101957 * c(NBPF20, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.350450646601022 74 0.104802513457937 0.943300651196526 574 0.359894413707695 3 2 1 -6.77626868681637 LTS-037 chr1 145115811 145115820 10 * c(NBPF20, SEC22B) 0.239 1 NA 1.193 1 NA NA NA NA NA LTS-037 chr1 145115821 145138315 22495 * c(NBPF20, SEC22B) 0.298562669286182 2 0.0148492424049176 1.40365106268009 43 0.71430414760268 7 5 2 -6.78035123780452 LTS-037 chr1 145138316 145138321 6 * NBPF20 NA 0 NA 0.88 1 NA NA NA NA NA LTS-037 chr1 145138322 152275280 7136959 * c(LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, TNFAIP8L2-SCNM1, MIR5087, FALEC, SF3B4, PIAS3, SEMA6C, POLR3C, TXNIP, MTMR11, MLLT11, TDRKH, CD160, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, LIX1L, CIART, HFE2, ANKRD35, NBPF12, BNIPL, CTSK, CTSS, PDIA3P1, ECM1, NUDT17, ENSA, FCGR1A, FLG, POGZ, RPRD2, FMO5, CA14, NBPF14, GJA5, GJA8, RNF115, RIIAD1, THEM5, NBPF15, ANKRD34A, TMOD4, NA NA NA NA NA NA NA NA NA LTS-037 CERS2, HIST2H2AB, HIST2H2BC, LINGO4, NOTCH2NL, LINC01138, LOC388692, LYSMD1, HRNR, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, PRKAB2, FAM63A, CDC42SE1, PSMB4, OTUD7B, PSMD4, LINC00869, CGN, ZNF687, PRUNE1, RFX5, BCL9, RORC, S100A10, S100A11, NBPF13P, PPIAL4D, LOC645166, MRPL9, GPR89A, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, NA, NA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NA, NA, PPIAL4F, LOC728989, PPIAL4E, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, ITGA10, PEX11B, SELENBP1, PRPF3, CHD1L, SETDB1, SV2A, RBM8A) 0.348489854860259 113 0.0612998384659739 1.00484981136236 7889 0.330880121624538 3 2 1 -6.77625618932698 LTS-037 NA NA NA NA LTS-037 chr1 152275281 152760557 485277 * c(C1orf68, LCE4A, FLG, LCE5A, LCE2B, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, FLG2, KPRP, CRNN, CRCT1, LCE3D) 0.343933926972244 43 0.0417737008409485 1.11688101294396 606 0.278579858224327 3 2 1 -6.84843579802463 LTS-037 chr1 152760558 152760641 84 * LCE1E NA 0 NA 2.262 1 NA NA NA NA NA LTS-037 chr1 152760642 152777362 16721 * c(LCE1C, LCE1D, LCE1E) 0.271075131334218 5 0.0483766472587756 1.94538365159622 39 0.733891886414252 8 6 2 -6.73753517976653 LTS-037 chr1 152777363 153507281 729919 * c(PGLYRP3, LELP1, SPRR4, S100A7A, LCE1A, LCE1B, LCE1C, IVL, LOR, SMCP, LCE6A, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3) 0.341820844268348 23 0.0664929488965892 1.06892928819361 600 0.246346101383129 3 2 1 -6.78938667170181 LTS-037 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.309 1 NA NA NA NA NA LTS-037 chr1 153507608 153927692 420085 * c(SLC27A3, S100A16, CRTC2, SNAPIN, CHTOP, ILF2, NPR1, S100A14, GATAD2B, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, INTS3, DENND4B) 0.284392873571023 10 0.051949655115955 1.2951438212527 1215 0.281219814891419 4 3 1 -6.73454179480673 LTS-037 chr1 153927693 153930814 3122 * CRTC2 NA 0 NA 0.854 1 NA NA NA NA NA LTS-037 chr1 153930815 155051603 1120789 * c(MIR190B, MIR4258, LOC100505666, ADAR, HAX1, PMVK, JTB, CHRNB2, CKS1B, TDRD10, SHE, DCST2, CREB3L4, DCST1, EFNA3, EFNA4, CRTC2, C1orf43, SLC39A1, IL6R, KCNN3, C1orf189, ZBTB7B, UBE2Q1, LENEP, ATP8B2, PBXIP1, RAB13, RPS27, SHC1, TPM3, FLAD1, ADAM15, AQP10, PYGO2, NUP210L, UBAP2L) 0.3675530411708 47 0.0479678816378748 1.01201459521552 2855 0.232732258464807 3 2 1 -6.75021377806725 LTS-037 chr1 155051604 155057519 5916 * EFNA3 NA 0 NA 1.398 1 NA NA NA NA NA LTS-037 chr1 155057520 155491198 433679 * c(SCAMP3, FAM189B, CLK2, EFNA1, EFNA3, KRTCAP2, FDPS, RUSC1, GBA, GBAP1, RUSC1-AS1, MTX1, MUC1, PKLR, DPM3, ASH1L, SLC50A1, HCN3, POU5F1P4, MIR555, MIR92B, THBS3, TRIM46) 0.213562581391987 4 0.00684957419601153 1.56862841796325 1494 0.345734579414506 10 8 2 -7.69613404686011 LTS-037 chr1 155491199 172387577 16896379 * c(MIR921, MSTO2P, TSTD1, CADM3-AS1, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LINC01133, LOC100505795, LOC100505918, PMF1-BGLAP, MIR4654, DNM3OS, MIR1295B, MIR5187, GPA33, C1orf61, SLC19A2, NES, PMF1, DUSP12, GLMP, SLAMF6, FCRL1, FCRL3, FMO9P, TADA1, SH2D1B, KLHDC9, OR10J5, UHMK1, FCRLB, TSACC, IQGAP3, NAXE, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRABP2, CRP, ITLN2, METTL11B, FAM78B, NA NA NA NA NA NA NA NA NA LTS-037 LRRC71, PYHIN1, TTC24, DPT, ETV3, F5, FCER1A, FCER1G, FCGR2A, FCGR2B, FCGR3A, FCGR3B, ALDH9A1, KIAA0907, KIFAP3, ATF6, SYT11, PRRC2C, FMO1, FMO2, FMO3, FMO4, SMG5, NCSTN, GPR161, ACKR1, ARHGAP30, CFAP126, CFAP45, MPC2, OLFML2B, DNM3, TIPRL, OR10J1, USP21, C1orf204, C1orf111, LINC01142, LAMTOR2, NME7, HDGF, APCS, HSPA6, HSPA7, APOA2, RXFP4, CCDC190, IFI16, OR10R2, FCRL6, CYCSP52, INSRR, PEAR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SFT2D2, KCNJ9, KCNJ10, ILDR2, FMO6P, VHLL, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LMNA, C1orf226, LOC400794, LMX1A, LY9, MIR9-1, MEF2D, MGST3, MNDA, MPZ, ETV3L, LRRC52, LOC440700, OR10J3, MYOC, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, ATP1B1, NIT1, NTRK1, DDR2, DCAF8, F11R, PBX1, RRNAD1, HSD17B7, UFC1, METTL13, CD244, PFDN2, PIGC, PRRX1, TMCO1, POU2F1, GON4L, GPATCH4, DUSP23, PPOX, MSTO1, KIRREL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 YY1AP1, PRCC, ITLN1, C1orf112, ADCY10, DCAF6, ASH1L, SLAMF8, UBQLN4, RAB25, RHBG, SCYL3, VANGL2, IGSF9, POGK, CCDC181, SLAMF7, CADM3, PEX19, RGS4, RIT1, HAPLN2, RXRG, BGLAP, XCL1, BCAN, SDHC, SELE, SELL, SELP, RPL31P11, SEMA4A, ASH1L-AS1, LOC646268, SLAMF1, PCP4L1, UAP1, SPTA1, SSR2, SCARNA4, SNORA80E, XCL2, MIR556, MIR557, TOP1P1, CCT3, UCK2, USF1, MIR765, DAP3, LINC00626, FCRL2, MRPL24, PAQR6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MROH9, OR6N2, OR6K2, NECTIN4, ISG20L2, FCRL5, FCRL4, NUF2, TAGLN2, TOMM40L, TMEM79, CASQ1, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, PEA15, B4GALT3, CREG1, CD84, SLAMF9, MPZL1, SH2D2A, CD1A, TBX19, CD1B, FCGR2C, CD1C, CD1D, CD1E, ARHGEF2, CD247, DEDD, CD5L, DUSP27, RCSD1, MEX3A, METTL18, GORAB, PIGM, IGSF8, AIM2, ADAMTS4, CD48, SLC25A44, NOS1AP, ARHGEF11, NR1I3) 0.35240601973578 545 0.0661775355913583 1.02884132288125 18373 0.30238825482625 3 2 1 -6.74143563289984 LTS-037 NA NA NA NA LTS-037 chr1 172387578 172389835 2258 * c(PIGC, C1orf105) NA 0 NA 0.747 1 NA NA NA NA NA LTS-037 chr1 172389836 176524925 4135090 * c(LOC100506023, GAS5-AS1, RC3H1, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, PAPPA2, SNORD74, TNN, MRPS14, RFWD2, SCARNA3, SNORD75, SNORD76, SNORD77, SNORD78, TNR, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, KIAA0040, RABGAP1L) 0.352285198670372 51 0.0868270898361322 0.973053444233204 2307 1.0384283123478 3 2 1 -6.745144249778 LTS-037 chr1 176524926 178822098 2297173 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2) 0.367745832390783 14 0.0689142244363987 1.12486775922872 1193 0.348384739878732 3 2 1 -6.82969753770283 LTS-037 chr1 178822099 196716542 17894444 * c(GM140, GS1-279B7.1, MIR1278, MIR548F1, MIR3121, LHX4-AS1, MIR4735, RNU6-72P, ARPC5, PRG4, STX6, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, CFH, MR1, BRINP3, KCNT2, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, IER5, PDC, UCHL5, PLA2G4A, SWT1, NA NA NA NA NA NA NA NA NA LTS-037 C1orf27, RALGPS2, PTGS2, QSOX1, KIAA1614, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, TOR3A, RGS18, SOAT1, TROVE2, TPR, CACNA1E, NPHS2, CDC73, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, ACBD6, RGS8, B3GALT2, LHX4, ANGPTL1, XPR1, CEP350, SMG7, FAM20B) 0.356522005912678 227 0.0582604355606889 1.02222419702697 9008 0.266025369068192 3 2 1 -6.74132045016202 LTS-037 NA NA NA NA LTS-037 chr1 196716543 196801352 84810 * c(CFHR4, CFHR3, CFH, CFHR1) NA 0 NA 0.644449615475532 121 0.226551890807934 2 NA NA -5.7842928891269 LTS-037 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 0.973 1 NA NA NA NA NA LTS-037 chr1 196857130 200014739 3157610 * c(MIR181A1HG, CFHR4, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LHX9, PTPRC, CFHR5) 0.358146061528042 29 0.0542921308108302 0.959946109543001 1681 0.292603183762702 3 2 1 -6.8376748520068 LTS-037 chr1 200014740 200017327 2588 * NR5A2 NA 0 NA 1.002 1 NA NA NA NA NA LTS-037 chr1 200017328 205501173 5483846 * c(MIR1231, ZBED6, PCAT6, MIR5191, TIMM17A, LRRN2, KDM5B, CHI3L1, CHIT1, ARL8A, SYT2, LINC00628, GOLT1A, ADORA1, CSRP1, LOC148709, PTPRVP, SHISA4, ELF3, PLEKHA6, KIF21B, NFASC, CAMSAP2, FMOD, ZNF281, PHLDA3, NR5A2, TMEM9, DSTYK, LMOD1, OPTC, LINC00303, LEMD1-AS1, GPR25, UBE2T, RPS10P7, KISS1, TMEM81, LAD1, NA, MDM4, MIR135B, MYBPH, MYOG, PPP1R12B, ATP2B4, ADIPOR1, CDK18, CYB5R1, PIK3C2B, PKP1, LAX1, NA NA NA NA NA NA NA NA NA LTS-037 KLHDC8A, ETNK2, LINC00862, PRELP, IPO9, C1orf106, PTPN7, RABIF, RBBP5, KLHL12, LGR6, REN, RNPEP, MGAT4EP, ASCL5, SNRPE, SNORA77, CNTN2, TNNI1, TNNT2, LINC01136, CACNA1S, BTG2, NUAK2, DDX59, LINC00260, PPP1R15B, PPFIA4, NAV1, IGFN1, TMEM183A, GPR37L1, LEMD1, SOX13, ZC3H11A, TMCC2, KIF14) 0.349323961421194 202 0.0658392301099194 1.04153825873663 8320 0.293056343142372 3 2 1 -6.75546960111313 LTS-037 NA NA NA NA LTS-037 chr1 205501174 205554085 52912 * c(MFSD4A, LOC284578, CDK18) 0.178 1 NA 1.14257935418848 47 0.310518184678009 3 3 0 -5.76804458685821 LTS-037 chr1 205554086 205578688 24603 * c(MFSD4A, ELK4) 0.234997506260413 4 0.152352661064168 1.05957234073339 107 0.23814068730722 5 4 1 -6.77720294549289 LTS-037 chr1 205578689 205578691 3 * ELK4 NA 0 NA 1.506 1 NA NA NA NA NA LTS-037 chr1 205578692 206328803 750112 * c(SLC26A9, PM20D1, CTSE, ELK4, SLC41A1, LOC284581, C1orf186, AVPR1B, NUCKS1, FAM72A, SLC45A3, RAB29) 0.20681275566642 34 0.0565031824384118 1.61831858252479 978 0.971082255769266 6 5 1 -6.76269768943581 LTS-037 chr1 206328804 206516261 187458 * c(CTSE, SRGAP2, SRGAP2C) 0.383 1 NA 1.58828258474659 37 0.221454223199678 5 5 0 -5.76454360567864 LTS-037 chr1 206516262 206516320 59 * c(SRGAP2, SRGAP2C) NA 0 NA 1.36687464586632 2 0.181726442764943 4 NA NA -5.76441174202594 LTS-037 chr1 206516321 206637795 121475 * c(SRGAP2, SRGAP2C) NA 0 NA 1.31029593290941 197 0.282032054596184 4 NA NA -5.7644196228043 LTS-037 chr1 206637796 206646492 8697 * IKBKE NA 0 NA 0.969 1 NA NA NA NA NA LTS-037 chr1 206646493 206858857 212365 * c(EIF2D, RASSF5, DYRK3, MAPKAPK2, IKBKE) 0.34953067327504 13 0.0521933044138903 0.962701456042474 406 0.206790031862924 3 2 1 -6.77122295857955 LTS-037 chr1 206858858 206902080 43223 * MAPKAPK2 NA 0 NA 1.305 1 NA NA NA NA NA LTS-037 chr1 206902081 207495189 593109 * c(IL24, CD55, IL19, IL10, IL20, PFKFB2, PIGR, YOD1, C4BPA, C4BPB, C1orf116, FCAMR, FCMR, MAPKAPK2) 0.216928556802297 5 0.0425640693543275 1.53589975896258 1107 0.335244658270833 5 4 1 -6.8131546116537 LTS-037 chr1 207495190 215256757 7761568 * c(MIR4260, MIR3122, LINC00538, CENPF, TATDN3, CR1, CR1L, CR2, C1orf74, LOC148696, SPATA45, FAM71A, CD55, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, KCNK2, LAMB3, MIR205, MIR29C, CD46, ATF3, NEK2, G0S2, DTL, PLXNA2, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, MIR205HG, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, TRAF3IP3, NA NA NA NA NA NA NA NA NA LTS-037 LINC00467, ANGEL2, CD34, LPGAT1) 0.34437100680471 76 0.0717828242663182 1.02387876532412 4500 0.252080018505579 3 2 1 -6.76376164109586 LTS-037 NA NA NA NA LTS-037 chr1 215256758 215259677 2920 * KCNK2 NA 0 NA 1.239 1 NA NA NA NA NA LTS-037 chr1 215259678 218510936 3251259 * c(LINC00210, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, USH2A) 0.373113977989337 35 0.102877695192239 1.08873709840167 1295 0.305747971876669 3 2 1 -6.8090511203598 LTS-037 chr1 218510937 234744371 16233435 * c(NA, LINC00582, MIR1182, TSNAX-DISC1, MIR320B2, MIR3620, LINC01354, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, SNAP47, CCSAP, LYPLAL1, DNAH14, C1orf131, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, FBXO28, ABCB10, RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, LIN9, CNIH4, GUK1, PYCR2, NA NA NA NA NA NA NA NA NA LTS-037 H3F3A, HLX, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, COA6, LBR, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, NVL, RRP15, TRIM17, EGLN1, MAP10, MARC2, SUSD4, SLC30A10, IARS2, ENAH, NUP133, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, LYPLAL1-AS1, SNRPD2P2, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA36B, AURKAPS1, TARBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TGFB2, LEFTY2, TLR5, TP53BP2, TSNAX, TGFB2-AS1, WNT9A, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, WNT3A, TAF1A, HIST3H2A, TMEM63A, URB2) 0.362318039248073 206 0.0594569873204707 1.00339331626226 11940 0.256608440662581 3 2 1 -6.82341260749126 LTS-037 NA NA NA NA LTS-037 chr1 234744372 234744413 42 * IRF2BP2 0.4 1 NA 0.238 1 NA NA NA NA NA LTS-037 chr1 234744414 235272805 528392 * c(LINC00184, LINC01132, IRF2BP2, TOMM20) 0 1 NA 0.637668521912383 39 0.351791252051899 2 2 0 -5.82334786000785 LTS-037 chr1 235272806 235272856 51 * TOMM20 NA 0 NA 1.073 1 NA NA NA NA NA LTS-037 chr1 235272857 235506918 234062 * c(MIR4753, RBM34, ARID4B, SNORA14B, GGPS1, TOMM20) 0.360058440226259 6 0.0489108031693067 0.916499632432685 345 0.171744120487845 3 2 1 -6.79576704041388 LTS-037 chr1 235506919 235507113 195 * GGPS1 0.33 1 NA 1.04831452105398 5 0.128647969280514 3 3 0 -5.76441267150381 LTS-037 chr1 235507114 236899015 1391902 * c(LGALS8-AS1, MIR1537, LYST, EDARADD, B3GALNT2, GNG4, LGALS8, NID1, HEATR1, ERO1B, TBCE, GPR137B, ACTN2, GGPS1) 0.313245509667561 62 0.0917010885165149 0.98105458083832 1522 0.306233651371533 3 2 1 -6.90649200626216 LTS-037 chr1 236899016 249211619 12312604 * c(AKT3, LOC100130331, MIR3123, MIR3124, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, PGBD2, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, NA NA NA NA NA NA NA NA NA LTS-037 OR2W3, OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, MTR, DESI2, SCCPDH, KIF26B, ZNF692, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, MT1HL1, RPS7P5, LYPD8, SMYD3, LINC01347, ZNF124, ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, ACTN2, EXO1, ZNF670, CEP170 NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ) 0.332822867318746 192 0.077981633375937 1.05406240168224 6488 0.431488425563414 3 2 1 -6.82994909350689 LTS-037 NA NA NA NA LTS-037 chr1 249211620 249214134 2515 * PGBD2 NA 0 NA 0.916276878160222 45 0.176244340836146 3 NA NA -5.76505931697197 LTS-037 chr2 38824 40569 1746 * FAM110C 0.304 1 NA 0.438294117006996 33 0.0920560085606649 1 1 0 -5.76462008464411 LTS-037 chr2 40570 25973276 25932707 * c(MIR1301, SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, NT5C1B-RDH14, MIR4757, MIR4429, LINC00570, PDIA6, MYCNOS, ADCY3, YWHAQ, KLHL29, CMPK2, MBOAT2, TMEM18, OSR1, TTC32, C2orf50, PQLC3, LINC01105, FAM84A, GDF7, DDX1, UBXN2A, DNMT3A, DTNB, E2F6, CYS1, FKBP1B, EFR3B, MYT1L, LPIN1, PUM2, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, NA NA NA NA NA NA NA NA NA LTS-037 HPCAL1, APOB, LINC00298, LINC00299, ID2, LINC01115, MSGN1, GEN1, C2orf48, PFN4, FAM228B, KCNF1, KCNS3, RNF144A-AS1, RHOB, MFSD2B, PTRHD1, LOC400940, LINC00487, LINC00954, MATN3, MYCN, ODC1, ITSN2, TRAPPC12, DNAJC27, NBAS, SF3B6, CPSF3, ACP1, SNTG2, POMC, ATAD2B, ASXL2, ADI1, ALLC, KIDINS220, WDR35, RDH14, LDAH, RPS7, RRM2, SDC1, FAM110C, HS1BP3, LOC645949, FAM228A, SOX11, ADAM17, TPO, TSSC1, LINC01249, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RAD51AP2, DNAJC27-AS1, MYT1L-AS1, VSNL1, PXDN, COLEC11, CENPO, SMC6, NOL10, WDCP, FAM49A, KLF11, NCOA1, ASAP2, TAF1B, RSAD2, ITGB1BP1, NT5C1B, ROCK2, TP53I3, GREB1, LAPTM4A, RNF144A) 0.19400286479914 210 0.0607661654427122 0.456203639027015 10604 0.14435490233027 1 1 0 -6.74196390610173 LTS-037 NA NA NA NA LTS-037 chr2 25973277 25976386 3110 * ASXL2 NA 0 NA 1.634 1 NA NA NA NA NA LTS-037 chr2 25976387 26150487 174101 * c(KIF3C, ASXL2) 0.119273959911154 2 0.143542676580869 1.75142656486081 86 0.461475985238799 8 7 1 -6.81821196385838 LTS-037 chr2 26150488 26204640 54153 * KIF3C 0.205 1 NA 1.83255041868666 95 0.264447886470009 6 6 0 -5.76479941088278 LTS-037 chr2 26204641 26457295 252655 * c(RAB10, GAREM2, HADHA, KIF3C) 0.211 1 NA 1.79797734018672 323 0.383233083278903 6 6 0 -5.76678663172707 LTS-037 chr2 26457296 26459810 2515 * HADHA NA 0 NA 1.38 1 NA NA NA NA NA LTS-037 chr2 26459811 27603409 1143599 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, EMILIN1, CIB4, ZNF513, TCF23, ADGRF3, MAPRE3, DNAJC5G, GTF3C2, HADHA, HADHB, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17) 0.270931351075144 39 0.0541515342715939 1.33192509151852 2892 0.299577245924658 4 3 1 -6.76154029872652 LTS-037 chr2 27603410 27603449 40 * ZNF513 NA 0 NA 1.046 1 NA NA NA NA NA LTS-037 chr2 27603450 38522484 10919035 * c(LOC100271832, LOC100288911, BRE-AS1, MIR4263, LOC100505716, CEBPZOS, MIR4765, RMDN2-AS1, CEBPZ, CDC42EP3, GPN1, ZNF513, PLB1, MYADML, RMDN2, CYP1B1, FAM179A, KRTCAP3, SLC4A1AP, WDR43, FOSL2, PRKD3, ALK, SPDYA, FTH1P3, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, IFT172, GCKR, SNORD53, LINC00486, CYP1B1-AS1, NRBP1, EHD3, C2orf71, SULT6B1, LTBP1, CAPN14, MEMO1, CRIM1, YPEL5, VIT, HEATR5B, PPM1G, PPP1CB, TRMT61B, NA NA NA NA NA NA NA NA NA LTS-037 NDUFAF7, TTC27, SLC30A6, EIF2AK2, BIRC6, NLRC4, RBKS, ATL2, FNDC4, SPAST, SRD5A2, STRN, SNORD92, MIR558, XDH, GALNT14, CCDC121, CLIP4, LBH, C2orf16, YIPF4, ZNF512, DPY30, CAPN13, MRPL33, BRE, FEZ2, SUPT7L) 0.283812705171574 176 0.0633925409906146 1.2565462262067 7500 0.317465452117673 4 3 1 -6.8627044932229 LTS-037 NA NA NA NA LTS-037 chr2 38522485 42163137 3640653 * c(SLC8A1-AS1, ARHGEF33, GALM, TMEM178A, CDKL4, LOC375196, LOC388942, C2orf91, ATL2, SRSF7, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, HNRNPLL) 0.274876128889169 11 0.10805007256739 1.16172921664585 1523 0.313546571495642 4 3 1 -7.0573852007577 LTS-037 chr2 42163138 42163221 84 * C2orf91 NA 0 NA 0.914 1 NA NA NA NA NA LTS-037 chr2 42163222 42559288 396067 * c(EML4, C2orf91, PKDCC) 0.296889148176765 7 0.143677714744792 1.0084239640483 305 0.31466992351286 3 2 1 -6.84841328647472 LTS-037 chr2 42559289 42560975 1687 * EML4 0.403 1 NA 0.980839833158816 19 0.156728841712562 3 3 0 -5.76450319804564 LTS-037 chr2 42560976 55118388 12557413 * c(LINC01126, LINC01119, MIR3682, MIR548AD, LRPPRC, SIX2, GPR75, GTF2A1L, STON1, PPP1R21, C2orf73, PLEKHH2, OXER1, KCNG3, EPAS1, PSME4, RHOQ, HAAO, FSHR, ERLEC1, C2orf61, STON1-GTF2A1L, MSH6, FOXN2, TMEM247, LINC01118, TSPYL6, LHCGR, LINC01121, EML6, EPCAM, MSH2, CHAC2, ASB3, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, RPL23AP32, TTC7A, MTA3, THADA, ABCG5, ABCG8, SIX3, SLC3A1, SPTBN1, ZFP36L2, MIR559, NA NA NA NA NA NA NA NA NA LTS-037 C1GALT1C1L, CAMKMT, FBXO11, CALM2, MCFD2, ATP6V1E2, COX7A2L, NRXN1, CRIPT, PREPL, SOCS5, ACYP2) 0.3557757159206 148 0.0633905703178442 1.00560050897835 5886 0.544775237801894 3 2 1 -6.74895246576538 LTS-037 NA NA NA NA LTS-037 chr2 55118389 55749310 630922 * c(CFAP36, CLHC1, PRORSD1P, EML6, MTIF2, CCDC88A, RTN4, RPS27A) 0.299496242581049 15 0.047325418520022 1.23111050525223 720 0.333985037791559 4 3 1 -6.82412000257287 LTS-037 chr2 55749311 55750855 1545 * CFAP36 NA 0 NA 1.073 1 NA NA NA NA NA LTS-037 chr2 55750856 65659330 9908475 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR4434, MIR4432, MIR5192, ACTR2, CCT4, B3GNT2, CFAP36, CCDC85A, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, SPRED2, EFEMP1, CEP68, EHBP1, LGALSL, LOC339803, C2orf74, LOC339807, LINC01122, LINC01185, LOC400958, MIR216A, MIR217, MDH1, OTX1, WDPCP, VPS54, PEX13, BCL11A, AFTPH, FANCL, PELI1, PPP4R3B, RAB1A, REL, PAPOLG, SLC1A4, UGP2, VRK2, XPO1, FAM161A, KIAA1841, NA NA NA NA NA NA NA NA NA LTS-037 PNPT1, USP34, SERTAD2) 0.355964928573416 80 0.0834788535339446 0.982632040754345 3965 0.270024294814778 3 2 1 -6.90031970359889 LTS-037 NA NA NA NA LTS-037 chr2 66585300 66799594 214295 * c(MIR4778, MEIS1, MEIS1-AS3) NA 0 NA 1.39237272372255 145 0.349690997011368 4 NA NA -5.767889144724 LTS-037 chr2 67624466 70890304 3265839 * c(SNORA36C, LOC100133985, MIR3126, C1D, PROKR1, SNRNP27, WDR92, ADD2, ASPRV1, GKN2, APLF, AAK1, CNRIP1, GFPT1, NFU1, BMP10, ANXA4, PCBP1-AS1, MXD1, PCBP1, PCYOX1, PLEK, ETAA1, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, GMCL1, SNRPG, TGFA, TIA1, ANTXR1, FAM136A, ARHGAP25) 0.378492941380876 62 0.0517200494138361 0.957964810079777 2708 0.413571612549012 3 2 1 -6.86425231966845 LTS-037 chr2 70890305 70890308 4 * ADD2 NA 0 NA 1.056 1 NA NA NA NA NA LTS-037 chr2 70890309 75720165 4829857 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, MIR5000, MPHOSPH10, SMYD5, SEMA4F, CCT7, STAMBP, MTHFD2, TEX261, MRPL53, ADD2, M1AP, FBXO41, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, EMX1, EXOC6B, WBP1, VAX2, RAB11FIP5, ZNF638, HTRA2, HK2, TLX2, FIGLA, NOTO, C2orf78, BOLA3, C2orf81, PAIP2B, CD207, TPRKB, ATP6V1B1, AUP1, MOB1A, NAGK, CYP26B1, POLE4, SLC4A5, RTKN, TTC31, SPR, TACR1, ACTG2, NA NA NA NA NA NA NA NA NA LTS-037 ALMS1, MOGS, OR7E91P, ANKRD53, DYSF, INO80B, WDR54, EVA1A, PRADC1, DUSP11, MCEE, LOXL3, PCGF1, CCDC142, LBX2, NAT8, SFXN5) 0.376335117874627 129 0.058827614491361 1.01420332815443 5737 0.250354977764681 3 2 1 -6.78676478773517 LTS-037 NA NA NA NA LTS-037 chr2 75720166 75879452 159287 * c(EVA1A, MRPL19) 0.309 1 NA 1.11096276744262 47 0.251343247983953 3 3 0 -5.77337465559883 LTS-037 chr2 75879453 89459844 13580392 * c(SNAR-H, ANAPC1P1, MIR4264, RNF103-CHMP3, MIR4779, MIR4436A, MIR4780, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, CYTOR, TRABD2A, TMEM150A, REG3G, CTNNA2, SMYD1, DHFRP3, DNAH6, TEX37, FABP1, RPIA, POLR1A, GGCX, SH2D6, LOC284950, LOC285074, FOXI3, LRRTM1, FUNDC2P2, C2orf68, MAT2A, REG3A, RNF181, KRCC1, MRPL35, CHMP3, RETSAT, PTCD3, THNSL2, KDM3A, KCMF1, REG1A, REG1B, REG1CP, SFTPB, ANKRD36BP2, RMND5A, NA NA NA NA NA NA NA NA NA LTS-037 REEP1, SNORD94, GCFC2, RNF103, LRRTM4, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, CD8B, EIF2AK3, MRPL19) 0.344371576703247 101 0.094410559067121 1.01191224777966 4654 0.30989328970996 3 2 1 -6.77253082914952 LTS-037 NA NA NA NA LTS-037 chr2 89459845 89475767 15923 * character(0) NA 0 NA 0.374 1 NA NA NA NA NA LTS-037 chr2 89475768 89597087 121320 * character(0) NA 0 NA 0.326879181600073 55 0.15947247421944 1 NA NA -6.06874112389729 LTS-037 chr2 89597088 89597103 16 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-037 chr2 89597104 90060996 463893 * character(0) 0.204 1 NA 2.09355135766731 81 2.16075896652536 7 7 0 -5.76449141158415 LTS-037 chr2 90060997 91937699 1876703 * LOC654342 0.317413919404478 21 0.0699273432452094 1.01559441683188 130 0.262701551552014 3 2 1 -6.9526878228012 LTS-037 chr2 91937700 91955470 17771 * character(0) NA 0 NA 1.09548935464532 19 0.264677835727033 3 NA NA -5.76501432532395 LTS-037 chr2 95537183 95787501 250319 * c(TEKT4, MAL, LOC442028, MRPS5) 0.39 1 NA 1.05257446008266 147 0.317991499708514 3 3 0 -5.7651990015716 LTS-037 chr2 95787502 137852627 42065126 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, BCL2L11, FAR2P2, LOC100287010, SH3RF3-AS1, MIR663B, MIR4265, MIR3127, MIR4267, MIR4266, LOC100499194, MIR3679, LINC01158, LOC100507334, LOC100507600, MIR4772, MIR4783, MIR4782, MIR4784, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, MAP3K2, ARID5A, EDAR, TBC1D8, RABL2A, GPR45, TUBA3E, MGAT4A, TUBA3D, LYPD1, RPL23AP7, CNGA3, NMS, LYG1, MITD1, CNTNAP5, FBLN7, TRIM43, ACMSD, NA NA NA NA NA NA NA NA NA LTS-037 FAM168B, C2orf76, TMEM182, COX5B, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, PROM2, GPAT2, ITPRIPL1, LOC150776, WTH3DI, ADRA2B, LINC01106, SEPT10, SULT1C2P1, FAHD2B, DARS, DBI, LONRF2, CCDC138, C1QL2, DUSP2, FOXD4L1, CFAP221, VWA3B, CREG2, ANKRD23, EN1, AMER3, LINC00116, ERCC3, FHL2, RAB3GAP1, SNRNP200, UBXN4, CLASP1, NCAPH, TMEM131, R3HDM1, PSD4, NIFK-AS1, LYG2, UNC50, PTPN18, CNNM4, CNNM3, IL36RN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, STARD7-AS1, MED15P9, PLGLA, RGPD4, GPR39, C2orf27A, TFCP2L1, GYPC, KCNIP3, CYP27C1, KIAA1211L, NCKAP5, SH3RF3, GPR148, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, ANKRD36, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, LOC389033, LINC01120, AFF3, LCT, LIMS1, FLJ42351, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, ASTL, LINC01191, FAR2P1, LOC440910, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SULT1C3, POTEE, MYO7B, NPAS2, NPHP1, COA5, ARHGEF4, FAHD2A, INSIG2, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, MIR4435-2HG, POLR2D, CCDC93, POU3F3, SEMA4C, PLEKHB2, STEAP3, ACOXL, WDR33, ANKRD30BL, CNOT11, SMPD4, TMEM127, IWS1, LIMS2, KANSL3, CFC1, PROC, IL36G, UGGT1, STARD7, DPP10, EPB41L5, ANKRD36B, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, MRPS5, SOWAHC, TRIM43B, POTEI, CFC1B, RGPD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 POTEJ, MZT2A, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, POTEF, LINC01125, RGPD4-AS1, FAHD2CP, RFX8, ZAP70, ZNF2, PAX8, IL1R2, MALL, CXCR4, PDCL3, C2orf49, TMEM185B, SAP130, MZT2B, MAP3K19, UXS1, SLC35F5, TSGA10, THSD7B, TMEM177, LMAN2L, TMEM163, AMMECR1L, ZRANB3, RAB6C, POLR1B, CHCHD5, CCDC115, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, ZNF514, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, FER1L5, CCNT2, CCDC74A, CCDC74B, IL1RL1, IMP4, NEURL3, CIAO1, TGFBRAP1, HS6ST1, MAP4K4, CHST10, GCC2, EIF5B) 0.351762089340227 518 0.0770060375221708 1.00829439221586 21646 0.587855148700049 3 2 1 -6.76917029343219 LTS-037 NA NA NA NA LTS-037 chr2 137852628 137852698 71 * THSD7B 0.319 1 NA 5.266 1 NA NA NA NA NA LTS-037 chr2 137852699 143643113 5790415 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B, KYNU) 0.356216015152869 20 0.094515648940992 1.11587241487881 983 0.330063950966597 3 2 1 -6.93853334520613 LTS-037 chr2 143643114 143676268 33155 * KYNU NA 0 NA 0.947 1 NA NA NA NA NA LTS-037 chr2 143676269 148602473 4926205 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.366394980648719 7 0.10888788467305 0.914716163279006 459 0.311506363203537 3 2 1 -7.12745417736443 LTS-037 chr2 148602474 165539112 16936639 * c(TANK, LOC100144595, LY75-CD302, MIR4785, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, FMNL2, GALNT13, ACVR1C, LYPD6, LYPD6B, CCDC148, ARL6IP6, WDSUB1, UPP2, DPP4, FAP, PLA2R1, GCA, EPC2, ARL5A, GCG, MMADHC, GPD2, AHCTF1P1, GRB14, BAZ2B, ITGB6, RBM43, KCNJ3, KIF5C, RND3, LY75, NEB, NR4A2, ORC4, FIGN, RIF1, CCDC148-AS1, PRPF40A, MBD5, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, MARCH7, TNFAIP6, CACNB4, NA NA NA NA NA NA NA NA NA LTS-037 PKP4, TANC1, ACVR1, KCNH7, NMI, ACVR2A, DAPL1, CYTIP, CD302) 0.363626223024601 81 0.0530269701934896 1.02157583316804 7398 0.263495573704196 3 2 1 -6.74232350093529 LTS-037 NA NA NA NA LTS-037 chr2 165539113 165542581 3469 * COBLL1 NA 0 NA 1.47042909540675 71 0.499780006331156 5 NA NA -5.76446993730105 LTS-037 chr2 165542582 165544233 1652 * c(SNORA70F, COBLL1) NA 0 NA 1.01 1 NA NA NA NA NA LTS-037 chr2 165544234 170366300 4822067 * c(SNORA70F, LOC100506124, TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, SLC38A11, COBLL1, CERS6, GALNT3, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, TTC21B, CSRNP3, ABCB11, B3GALT1) 0.341536964441814 60 0.0696739054980029 1.04950197058899 3411 0.5088973630156 3 2 1 -6.7804838161233 LTS-037 chr2 170366301 170366320 20 * KLHL41 NA 0 NA 0.946 1 NA NA NA NA NA LTS-037 chr2 170366321 179208974 8842654 * c(MIR933, LOC100130691, SP9, MIR1246, MIR3128, NA, HOXD-AS2, PHOSPHO2-KLHL23, KLHL41, MTX2, RAPGEF4, CHN1, CHRNA1, OSBPL6, RBM45, CCDC173, UBR3, ATF2, MYO3B, TTC30B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, METAP1D, GAD1, GORASP2, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, LINC01116, SP5, HAGLR, MIR10B, LINC01124, NFE2L2, PHOSPHO2, NA NA NA NA NA NA NA NA NA LTS-037 PDE11A, PDK1, ZAK, ATP5G3, SP3, SSB, WIPF1, SCRN3, FASTKD1, METTL8, CYBRD1, DCAF17, LNPK, CDCA7, HAT1, AGPS, SLC25A12, RAPGEF4-AS1, TTC30A, PPIG, CIR1, TLK1) 0.346945906218713 101 0.0916986649222051 0.985210262885142 6039 0.279730963618428 3 2 1 -6.86895071382207 LTS-037 NA NA NA NA LTS-037 chr2 179208975 179260382 51408 * c(MIR548N, OSBPL6) 0.401 1 NA 0.981079063156545 75 0.15997589683314 3 3 0 -5.7671046246422 LTS-037 chr2 179260383 179315781 55399 * c(MIR548N, OSBPL6, PRKRA) 0.102923236784904 9 0.128589463020887 0.940684952374199 153 0.329491003357345 3 3 0 -6.74974485777186 LTS-037 chr2 179315782 179324025 8244 * c(MIR548N, DFNB59, PRKRA) 0.412 1 NA 1.09722328606314 33 0.292348299822474 3 3 0 -5.76465154984116 LTS-037 chr2 179324026 183948321 4624296 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, NCKAP1, DUSP19, ZNF385B, PPP1R1C, FRZB, CCDC141, ITGA4, CERKL, NEUROD1, DFNB59, PDE1A, FKBP7, DNAJC10, CWC22, PLEKHA3, SSFA2, TTN, SESTD1) 0.379911170739709 91 0.0461910932325388 1.00887942744541 5014 0.220921014651687 3 2 1 -6.86111674809058 LTS-037 chr2 183948322 183951765 3444 * DUSP19 NA 0 NA 1.054 1 NA NA NA NA NA LTS-037 chr2 183951766 190728981 6777216 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.348609915592697 52 0.0548795609874749 1.05979760522399 2961 0.285656227495664 3 2 1 -6.8040459171606 LTS-037 chr2 190728982 190732521 3540 * PMS1 NA 0 NA 0.959 1 NA NA NA NA NA LTS-037 chr2 190732522 206165355 15432834 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, ICOS, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, NA NA NA NA NA NA NA NA NA LTS-037 CYP20A1, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NABP1, RAPH1, CDK15, TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, CD28, BZW1) 0.338849787961018 137 0.0941673260431539 0.977995955674188 9159 0.310747913755165 3 2 1 -6.99839883142307 LTS-037 NA NA NA NA LTS-037 chr2 206165356 230312194 24146839 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4775, MIR4776-2, MIR5702, MIR5703, VWC2L-IT1, ARPC2, SPEG, LANCL1, STK11IP, MOGAT1, PARD3B, COL4A3, COL4A4, AP1S3, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, METTL21A, CCNYL1, NA NA NA NA NA NA NA NA NA LTS-037 CCDC140, SLC23A3, LINC00608, GPBAR1, CYP27A1, DAW1, DES, EEF1B2, PIKFYVE, LOC200726, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, GMPPA, AGFG1, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, IRS1, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, ATIC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NDUFS1, MIR375, SMARCAL1, PAX3, SERPINE2, PRKAG3, FEV, INO80D, PID1, ANKZF1, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, PTH2R, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, CCL20, TMBIM1, RNF25, LINC00607, LOC646736, SLC4A3, MRPL44, LOC654841, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NHEJ1, FAM124B, TM4SF20, TUBA4B, SPHKAP, WNT10A, SLC19A3, RHBDD1, CUL3, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, DNER, TTLL4) 0.355955322853788 309 0.0693531369526858 1.03725576455189 15822 0.322135938852923 3 2 1 -6.74512534844992 LTS-037 NA NA NA NA LTS-037 chr2 230312195 238683166 8370972 * c(LOC100286922, MIR1471, MIR4777, ARL4C, NMUR1, COPS8, SP140, CHRND, CHRNG, AGAP1, COL6A3, DIS3L2, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, C2orf57, TIGD1, SH3BP4, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, GBX2, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, KCNJ13, C2orf82, ASB18, DNAJB3, NCL, NEU2, NPPC, PRLH, PDE6D, CAB39, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, NA NA NA NA NA NA NA NA NA LTS-037 UGT1A9, UGT1A4, UGT1A1, UGT1A3, ATG16L1, USP40, HJURP, ACKR3, PSMD1, PTMA, SNORD20, SAG, RAB17, PRSS56, COPS7B, SNORA75, SP100, SPP2, SCARNA6, SCARNA5, TRPM8, MLPH, IQCA1, ARMC9, EFHD1, ITM2C, DGKD, LRRFIP1, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.360473747457019 164 0.0622103499209629 0.996021803535137 6833 0.257464624407402 3 2 1 -6.81048117838916 LTS-037 NA NA NA NA LTS-037 chr2 238683167 238688498 5332 * LRRFIP1 0.421 1 NA 0.819174212879158 11 0.235695682067904 2 2 0 -5.764963628707 LTS-037 chr2 238688499 238786017 97519 * c(RAMP1, RBM44, LRRFIP1) 0.374 1 NA 0.985401027719747 108 0.190554396939946 3 3 0 -5.76737400700746 LTS-037 chr2 238786018 238820142 34125 * RAMP1 NA 0 NA 1.113 1 NA NA NA NA NA LTS-037 chr2 238820143 239186694 366552 * c(UBE2F-SCLY, RAMP1, UBE2F, LOC151174, ESPNL, KLHL30, SCLY, HES6, LOC643387, ILKAP, PER2) 0.284703341683678 40 0.0525871620776841 1.18647267939033 843 0.344400599650166 4 3 1 -6.75351006337174 LTS-037 chr2 239186695 239228999 42305 * PER2 NA 0 NA 0.792 1 NA NA NA NA NA LTS-037 chr2 239229000 242836535 3607536 * c(PP14571, BOK-AS1, MIR4269, MIR2467, MIR4440, MIR4786, MIR4441, STK25, CAPN10, TWIST2, NEU4, MTERF4, OTOS, COPS9, OR6B3, LOC150935, LINC01107, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GPC1, RTP5, DUSP28, GPR35, HDLBP, AQP12A, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, THAP4, ANKMY1, PDCD1, ASB1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, PRR21, AQP12B, BOK, D2HGDH, C2orf54, ING5, MGC16025, NA NA NA NA NA NA NA NA NA LTS-037 HDAC4, FARP2) 0.35381286751817 134 0.0687404385777328 1.01671004312342 4409 0.379579541366427 3 2 1 -6.74030035128378 LTS-037 NA NA NA NA LTS-037 chr2 242836536 243037218 200683 * LOC728323 NA 0 NA 1.06100663132619 27 0.345548001951135 3 NA NA -5.76538073648765 LTS-037 chr3 239351 418089 178739 * CHL1 0.453 1 NA 1.07871497907218 67 0.18033373880008 3 3 0 -5.77186611669968 LTS-037 chr3 418090 15219758 14801669 * c(MIR885, EGOT, GHRLOS, MKRN2OS, FGD5P1, LMCD1-AS1, SRGAP3-AS3, FGD5-AS1, BHLHE40-AS1, ARPC4-TTLL3, MIR4790, CNTN4-AS2, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, CHL1, FANCD2OS, CHCHD4, TAMM41, IL17RE, CPNE9, FGD5, CIDECP, CNTN4, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, CNTN6, LSM3, SUMF1, RPUSD3, PRRT3, LINC00606, LINC00620, GRM7, LINC00312, LMCD1, HRH1, COL6A4P1, TPRXL, IL5RA, IRAK2, ITPR1, NA NA NA NA NA NA NA NA NA LTS-037 LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, TRNT1, CRBN, CCDC174, GHRL, PPARG, ARL8B, SETD5, TMEM40, EMC3, BRK1, RAD18, LRRN1, RAF1, RPL32, CIDEC, SEC13, RBSN, SETMAR, MTMR14, MRPS25, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, VHL, WNT7A, XPC, BRPF1, CRELD1, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, JAGN1, LINC00852, IL17RC, CAMK1, BHLHE40, CAV3, VGLL4, EDEM1, TATDN2, SRGAP3, IQSEC1 NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ) 0.354127450478612 166 0.0642183038081368 1.01926270196065 8867 0.267090395502171 3 2 1 -6.74878207587475 LTS-037 NA NA NA NA LTS-037 chr3 15219759 15222347 2589 * COL6A4P1 NA 0 NA 0.829 1 NA NA NA NA NA LTS-037 chr3 15222348 28579634 13357287 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, MIR4792, MIR4442, SGO1-AS1, LRRC3B, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, LINC00691, ZCWPW2, CMC1, NEK10, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, NKIRAS1, LINC00692, DPH3, LOC339862, COL6A4P1, VENTXP7, OXSM, NGLY1, RAB5A, RARB, RPL15, SATB1, AZI2, THRB-AS1, BTD, MIR563, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, COLQ, EOMES, EAF1, KAT2B, OXNAD1, NA NA NA NA NA NA NA NA NA LTS-037 SH3BP5, SLC4A7, TBC1D5, NR1D2) 0.36441993560119 106 0.0583247969623625 0.965847983584114 4305 0.25569484772853 3 2 1 -7.18619605009313 LTS-037 NA NA NA NA LTS-037 chr3 29322426 50156108 20833683 * c(ACVR2B-AS1, NRADDP, LOC100132146, BSN-AS2, PDCD6IP, PRSS46, MIR1226, MIR711, MIR4271, KRBOX1, MIR4793, MIR4443, RBM5-AS1, MIR5193, SNRK-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, CTDSPL, EIF1B, TRAIP, ARIH2, CRTAP, CXCR6, CSPG5, ARPP21, CCR9, USP19, WDR6, CMTM7, TREX1, SCN11A, OSBPL10, ZNF501, CCR1, CCR3, CCR4, CCR5, CCR8, ACKR2, COL7A1, LYZL4, KLHL40, TRIM71, TMEM42, CTNNB1, NA NA NA NA NA NA NA NA NA LTS-037 CCDC12, CMTM8, CCDC13, CX3CR1, CYP8B1, DAG1, XIRP1, CELSR3, TTC21A, KLHDC8B, STT3B, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, CLASP2, GPD1L, NBEAL2, KLHL18, LARS2, ZNF620, FBXL2, CNOT10, TMEM158, NDUFAF3, ALS2CL, TMIE, MYRIP, PTPN23, HIGD1A, SUSD5, GLB1, RBMS3, AMT, GOLGA4, XCR1, FBXW12, ENTPD3-AS1, ZNF619, ZNF621, TCAIM, ZNF660, KIF9-AS1, GPX1, SETD2, PRSS50, GMPPB, ACAA1, APEH, CCDC36, C3orf35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 GADL1, PRSS42, ZNF860, ZNF445, IMPDH2, ITGA9, TOPAZ1, C3orf62, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, LAMB2, RPSA, LTF, MIR128-2, MIR138-1, MIR191, MIR26A1, MAP4, MLH1, MOBP, EIF1B-AS1, TMEM89, MST1, MST1R, MYD88, MYL3, NKTR, MIR425, VILL, ABHD5, DYNC1LI1, SS18L2, SHISA5, ZDHHC3, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLCD1, PLXNB1, LZTFL1, P4HTM, SLC6A20, ELP6, SNRK, QRICH1, CMTM6, SLC25A38, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ULK4, ANO10, DALRD3, PRKAR2A, ZKSCAN7, KIF15, SNORA6, PTH1R, KIAA1143, HHATL, WDR48, QARS, SNORA62, SCN5A, SCN10A, RNF123, KIF9, TMPPE, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CSRNP1, GORASP1, CDCP1, CCDC71, SLC26A6, SMARCC1, STAC, MIR564, TCTA, TDGF1, TGM4, TGFBR2, CLEC3B, FAM198A, CCR2, UBA7, UBP1, USP4, UQCRC1, VIPR1, ZNF35, SLC25A20, CAMKV, LRRC2, FYCO1, CCDC51, CAMP, RTP3, LRRC2-AS1, ATRIP, NICN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MON1A, POMGNT2, DCLK3, CCK, BSN, LIMD1, UCN2, CCRL2, RPL14, SEC22C, ZNF502, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, IP6K1, EPM2AIP1, TRANK1, CDC25A, DLEC1, EXOG, XYLB, OXSR1) 0.362594550736134 387 0.0699386112230817 1.01651915670813 21751 0.347802031043274 3 2 1 -6.74808073205432 LTS-037 NA NA NA NA LTS-037 chr3 50156109 50156113 5 * RBM5 NA 0 NA 1.389 1 NA NA NA NA NA LTS-037 chr3 50156114 50355361 199248 * c(RBM5, SLC38A3, LSMEM2, NAT6, GNAI2, GNAT1, HYAL1, SEMA3F, IFRD2, SEMA3B, HYAL3, HYAL2) 0.230615275246302 2 0.00353553390593274 1.55386821595996 617 0.277438783954053 5 4 1 -6.83127993169512 LTS-037 chr3 50355362 50355459 98 * HYAL2 NA 0 NA 1.021 1 NA NA NA NA NA LTS-037 chr3 50355460 89530956 39175497 * c(SNORD19B, LINC00696, ZNF717, LINC00994, MIR1284, MIR1324, PARP3, MIR3136, MIR4272, MIR3938, IQCF4, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4787, MIR4795, PRICKLE2-AS1, MIR5688, MAGI1-AS1, SYNPR-AS1, CADM2-AS2, ARHGEF3-AS1, CACNA2D3-AS1, PRICKLE2-AS2, PRICKLE2-AS3, ARL6IP5, NPRL2, CYB561D2, TMEM115, RPP14, FAM107A, RASSF1, NISCH, TUSC2, TWF2, SLC25A26, CISH, GPR62, FAM3D, IQCF1, GLYCTK, NA NA NA NA NA NA NA NA NA LTS-037 PPM1M, C3orf49, SNTN, SYNPR, ASB14, FAM19A4, PPP4R2, PRICKLE2, DNASE1L3, DOCK3, DUSP7, C3orf67, KCTD6, LINC00870, DNAH12, PDE12, DENND6A, EPHA3, ALAS1, FHIT, PDZRN3, RAD54L2, FRMD4B, STAB1, FLNB, FAM208A, RYBP, CADM2, ABHD14A, POC1A, CHMP2B, DNAH1, LRIG1, ERC2, APPL1, GBE1, GNL3, FOXP1, GPR27, EOGT, C3orf38, CCDC66, LINC00698, SPCS1, GRM2, RBM15B, EIF4E3, HTR1F, SPATA12, ITIH1, ITIH3, ITIH4, TMEM110, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ARF4, IQCF2, IQCF5, MUSTN1, VGLL3, IQCF3, MIRLET7G, MIR135A1, FAM19A1, MITF, IQCF6, SMIM4, LINC00971, ARHGEF3, CNTN3, C3orf18, ZMYND10, TEX264, HEMK1, SFMBT1, PHF7, PDHB, TLR9, POU1F1, IL17RD, PXK, FEZF2, EBLN2, SHQ1, PBRM1, ZNF654, CHDH, IL17RB, CACNA2D3, PRKCD, DCP1A, GLT8D1, LMOD3, SEMA3G, ADAMTS9, PCBP4, ABHD6, LRTM1, C3orf14, PTPRG, SELENOK, PROK2, ROBO1, ROBO2, RPL29, ATXN7, NT5DC2, NEK4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNORD19, FAM86DP, SNORD69, MIR548A2, TKT, ERC2-IT1, TMF1, TNNC1, GXYLT2, WNT5A, CACNA1D, MAPKAPK3, SLMAP, MANF, ESRG, THOC7, WDR82, ACOX2, BAP1, KBTBD8, ABHD14B, CGGBP1, CADPS, HYAL2, SUCLG2, HESX1, UBA3, RRP9, RFT1, MAGI1, CACNA2D2, ACTR8, ACY1, DCAF1, PSMD6) 0.353302839394377 475 0.0834047894219037 1.02649856559866 16592 0.2824787742281 3 2 1 -6.7384026023853 LTS-037 NA NA NA NA LTS-037 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.1399121945754 31 0.436239837358906 3 NA NA -5.78936562103311 LTS-037 chr3 93591838 93593119 1282 * PROS1 0.488 1 NA 1.18468529367836 25 0.268321958351033 4 4 0 -5.7645255846849 LTS-037 chr3 93593120 101477076 7883957 * c(ZBTB11-AS1, MTHFD2P1, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, CRYBG3, DCBLD2, FAM172BP, CPOX, ARL13B, DHFR2, GABRR3, LINC00879, ABI3BP, OR5K1, OR5H1, ZBTB11, GPR15, EPHA6, PDCL3P4, LNP1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, IMPG2, TRMT10C, TMEM45A, TBC1D23, PROS1, CLDND1, NIT2, PCNP, SENP7, RPL24, NSUN3, TMEM30CP, OR5H6, OR5H2, CEP97, OR5AC2, ARL6, CMSS1, MINA, ADGRG7, NA NA NA NA NA NA NA NA NA LTS-037 TOMM70) 0.457790784644099 61 0.0328558367863149 1.24326178895038 3437 0.352179113001496 4 2 2 -7.09263456099491 LTS-037 NA NA NA NA LTS-037 chr3 101477077 101541692 64616 * c(CEP97, NXPE3) 0.242 1 NA 1.31102481907073 191 0.306316234726803 4 4 0 -5.76441306209006 LTS-037 chr3 101541693 107528980 5987288 * c(LINC00882, ZPLD1, LOC152225, ALCAM, DUBR, BBX, NFKBIZ, MIR548A3, CCDC54, CBLB, NXPE3) 0.404701390982564 13 0.138889367520543 1.27936913374283 741 0.409688939436162 4 2 2 -6.77986479793451 LTS-037 chr3 107528981 108047241 518261 * c(HHLA2, LINC00635, LINC00636, IFT57, BBX, CD47) NA 0 NA 1.74950203298605 281 0.478613930144238 6 NA NA -5.77210216609021 LTS-037 chr3 108047242 108070599 23358 * HHLA2 NA 0 NA 1.289 1 NA NA NA NA NA LTS-037 chr3 108070600 110845092 2774493 * c(PVRL3-AS1, HHLA2, DPPA2, MYH15, NECTIN3, MORC1, FLJ22763, LINC01205, TRAT1, DPPA4, KIAA1524, LINC00488, RETNLB, GUCA1C, DZIP3) 0.385638090386555 15 0.215275858465587 1.28967901864403 1109 0.382911868650773 4 2 2 -6.77037686859457 LTS-037 chr3 110845093 110853775 8683 * NECTIN3 0.479 1 NA 1.13923305679704 31 0.242311747126917 3 3 0 -5.76533600231796 LTS-037 chr3 110853776 122599330 11745555 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, CFAP44-AS1, CD96, POLQ, FSTL1, LRRC58, CCDC58, CD200R1, ADPRH, CSTA, DTX3L, CCDC80, BTLA, SPICE1, IGSF11, C3orf30, PARP15, GPR156, DRD3, TIGIT, USF3, ZDHHC23, PLCXD2, GCSAM, NEPRO, NECTIN3, GAP43, ZBTB20, FAM162A, GOLGB1, TUSC7, RABL3, SLC9C1, ILDR1, GTPBP8, TAGLN3, GSK3B, GTF2E1, HCLS1, HGD, TMPRSS7, CD200R1L, KPNA1, LSAMP, MIR198, CD200, NDUFB4, NA NA NA NA NA NA NA NA NA LTS-037 ARGFX, TIMMDC1, PLA1A, FBXO40, ATP6V1A, WDR5B, PARP14, GRAMD1C, SIDT1, SLC35A5, TMEM39A, ABHD10, CFAP44, EAF2, POGLUT1, ARHGAP31, CCDC191, POPDC2, ATG3, SLC15A2, MIR567, MIR568, UPK1B, ZNF80, ZBED2, HSPBAP1, C3orf52, QTRT2, NAA50, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, PHLDB2, BOC, CD80, CD86, STXBP5L, IQCB1) 0.449056895069652 162 0.0725296255598423 1.26335241342485 8725 0.358847504187758 4 2 2 -6.83620261006554 LTS-037 NA NA NA NA LTS-037 chr3 122599331 141161876 18562546 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-037 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.449554927421512 299 0.0762572168153832 1.32002627435008 13617 0.328684321763938 4 2 2 -6.75254823765672 LTS-037 NA NA NA NA LTS-037 chr3 141161877 141161880 4 * ZBTB38 NA 0 NA 1.081 1 NA NA NA NA NA LTS-037 chr3 141161881 169569432 28407552 * c(WWTR1-AS1, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LOC100507389, ARHGEF26-AS1, LOC100507537, SMC4, MIR5186, HLTF-AS1, KCNAB1-AS2, KCNAB1-AS1, SLC9A9-AS1, LOC101243545, PDCD10, RNF13, TM4SF18, MED12L, CLRN1-AS1, AADAC, OTOL1, ERICH6, GRK7, CP, CPA3, CPB1, PPM1L, WDR49, LRRC34, PQLC2L, C3orf79, SPTSSB, DHX36, AGTR1, AADACP1, C3orf58, MECOM, SLITRK3, PLCH1, U2SURP, ZBTB38, GK5, WWTR1, NA NA NA NA NA NA NA NA NA LTS-037 TIPARP, ARHGEF26, PCOLCE2, SERP1, GOLIM4, SLC9A9, IGSF10, C3orf33, TRIM59, GPR171, GYG1, SCHIP1, LINC00880, LRRIQ4, AADACL2, GPR149, PAQR9, IL12A, KPNA4, PLSCR5, ANKUB1, LEKR1, MBNL1-AS1, C3orf80, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, ATP1B3, P2RY1, NMD3, COMMD2, RSRC1, SELENOT, PFN2, SERPINI1, SERPINI2, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, XRN1, ATR, MYNN, SUCNR1, LXN, CCNL1, PLSCR2, PLSCR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 IFT80, PTX3, BCHE, RAP2B, RARRES1, RASA2, TMEM14EP, LINC01330, LOC646903, PA2G4P4, LINC01192, SHOX2, MFSD1, SI, SIAH2, P2RY12, IQCJ, HLTF, SSR3, SCARNA7, MIR551B, TERC, TFDP2, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, VEPH1, ZBBX, LRRC31, ARL14, EIF2A, ZIC4, HPS3, ACTRT3, GFM1, B3GALNT1, GMPS, SLC33A1, EGFEM1P, CHST2, RNF7, TSC22D2, P2RY14) 0.452067664307995 229 0.0698769611783199 1.28544365086145 11419 0.419355460992516 4 2 2 -6.81102340719008 LTS-037 NA NA NA NA LTS-037 chr3 169569433 169813887 244455 * c(LOC100128164, GPR160, SAMD7, SEC62, LRRC31, PHC3) 0 1 NA 1.26063516152725 293 0.375939669951779 4 4 0 -5.76622765734445 LTS-037 chr3 169813888 189038628 19224741 * c(LOC100131635, MIR1224, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, TPRG1-AS2, ADIPOQ-AS1, LINC01014, ALG3, KCNMB2, IGF2BP2, RPL39L, AP2M1, CLCN2, DNAJC19, FAM131A, RTP1, CRYGS, TTC14, DGKG, HTR3C, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, EPHB3, ETV5, NLGN1, TNIK, MCF2L2, ATP11B, VPS8, LOC253573, NAALADL2, GHSR, FETUB, LAMP3, KCNMB3, HTR3E, C3orf70, TPRG1, HRG, NA NA NA NA NA NA NA NA NA LTS-037 CCDC39, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, SOX2-OT, KNG1, TMEM212, FLJ46066, FLJ42393, LPP, NDUFB5, CLDN11, ZNF639, PEX5L, DNAJB11, PIK3CA, PLD1, DCUN1D1, POLR2H, KLHL24, TBCCD1, ABCF3, PARL, MFN1, YEATS2, PRKCI, MASP1, EIF5A2, MCCC1, PSMD2, MRPL47, NCEH1, SLC7A14, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, IGF2BP2-AS1, FNDC3B, ST6GAL1, SKIL, SLC2A2, SOX2, SST, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNORA81, SNORD66, MIR569, THPO, TBL1XR1, MAP6D1, PHC3, FXR1, SPATA16, B3GNT5, ACTL6A, CHRD, TNFSF10, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, MAP3K13, ADIPOQ, CAMK2N2, ECE2) 0.444881506817534 262 0.0852261799850713 1.29130400013244 11608 0.370067693157182 4 2 2 -6.76554491839995 LTS-037 NA NA NA NA LTS-037 chr3 189038629 189038648 20 * TPRG1 0.493 1 NA 1.567 1 NA NA NA NA NA LTS-037 chr3 189038649 193272908 4234260 * c(MIR944, SNAR-I, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, TPRG1, OSTN, ATP13A5, IL1RAP, P3H2, HRASLS, GMNC, ATP13A4, MGC2889, TP63, CLDN1) 0.454132438808713 81 0.0333135543170429 1.38483842357711 1754 0.899045111906828 4 2 2 -6.90633731127779 LTS-037 chr3 193272909 193310897 37989 * character(0) NA 0 NA 1.217 1 NA NA NA NA NA LTS-037 chr3 193310898 195346516 2035619 * c(DPPA2P3, LINC00887, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, XXYLT1, ACAP2, GP5, HES1, APOD, LINC00884, OPA1, PPP1R2, LSG1, LOC647323, ATP13A3, TMEM44) 0.436594279175884 56 0.0772884775774097 1.27425409210178 1420 0.365273252697851 4 2 2 -6.74187883954975 LTS-037 chr3 195346517 195346610 94 * character(0) NA 0 NA 0.762 1 NA NA NA NA NA LTS-037 chr3 195346611 195398105 51495 * SDHAP2 0.437710951798185 6 0.0358148014094732 0.879194957964309 28 0.383251632080104 2 1 1 -6.73977996785232 LTS-037 chr3 195398106 195447886 49781 * c(MUC20, MIR570, SDHAP2) 0.215 1 NA 1.06758654874801 33 0.523301008097402 3 3 0 -5.76456113878201 LTS-037 chr3 195447887 195447963 77 * MUC20 NA 0 NA 0.984274388767804 3 0.121820906799011 3 NA NA -5.76441609478974 LTS-037 chr3 195447964 195451097 3134 * MUC20 NA 0 NA 2.537 1 NA NA NA NA NA LTS-037 chr3 195451098 195475989 24892 * c(MUC20, MUC4) 0.31254210243262 14 0.0536644540303321 1.83917575792565 100 2.40303578833109 10 7 3 -6.73405212478241 LTS-037 chr3 195475990 195476016 27 * MUC4 NA 0 NA 2.227 1 NA NA NA NA NA LTS-037 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.22 1 NA NA NA NA NA LTS-037 chr3 195477782 195479256 1475 * MUC4 0.459 1 NA 1.0875122162091 9 0.198117669860896 3 3 0 -5.7644800425944 LTS-037 chr3 195479257 195595513 116257 * c(TNK2, MUC4) 0.4764071594651 12 0.0243117380304372 1.28382617605206 234 0.327150716606212 4 2 2 -8.03017800626574 LTS-037 chr3 195595514 195595632 119 * TNK2 0.432 1 NA 1.2697162671154 4 0.350990384483678 4 4 0 -5.76441082574538 LTS-037 chr3 195595633 195925103 329471 * c(TNK2, ZDHHC19, SDHAP1, LINC00885, TFRC) 0.227652055252134 9 0.179172480525827 1.21067896285604 288 0.276043105632521 4 3 1 -6.80621951237697 LTS-037 chr3 195925104 195925355 252 * ZDHHC19 0.461 1 NA 1.06486508096167 7 0.306587593325223 3 3 0 -5.7644120590171 LTS-037 chr3 195925356 197769542 1844187 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PCYT1A, PIGX, RPL35A, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.447856790056745 65 0.0457206294963057 1.21626919147579 2647 0.287645130678806 4 2 2 -6.84990193986463 LTS-037 chr3 197769543 197770512 970 * LMLN NA 0 NA 1.21153420086253 23 0.322355902789512 4 NA NA -5.76444737424361 LTS-037 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.225 1 NA 0.786211216935707 13 0.188494711889369 2 2 0 -5.76480271204637 LTS-037 chr4 60336 2828658 2768323 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, NAT8L, IDUA, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, FAM193A, CTBP1-AS2, NA NA NA NA NA NA NA NA NA LTS-037 TMEM129) 0.143917327457443 135 0.0539739941064305 0.697806661779954 4331 0.204559824032411 2 2 0 -7.05038236843258 LTS-037 NA NA NA NA LTS-037 chr4 2828659 2828791 133 * SH3BP2 NA 0 NA 0.838 1 NA NA NA NA NA LTS-037 chr4 2828792 3517761 688970 * c(HTT-AS, MFSD10, ADD1, DOK7, GRK4, HTT, HGFAC, NOP14-AS1, MSANTD1, LRPAP1, RGS12, SH3BP2, NOP14) 0.116171872494744 19 0.0366594889306298 0.748733062766201 1605 0.196144146232849 2 2 0 -6.73431986467863 LTS-037 chr4 3517762 3589560 71799 * c(LINC00955, LRPAP1) 0.494 1 NA 0.754123186601441 39 0.197053675802048 2 2 0 -5.76467013518849 LTS-037 chr4 3589561 4249415 659855 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP, TMEM128) 0.379328773594208 29 0.106772328106402 0.77031560381346 164 0.208814062228023 2 1 1 -6.91202114300903 LTS-037 chr4 4249416 4249620 205 * TMEM128 0.103 1 NA 0.486356602961428 4 0.247063251010748 1 1 0 -5.76441805013639 LTS-037 chr4 4249621 25760680 21511060 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, SLC34A2, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, CRMP1, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, SEL1L3, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, NSG1, NA NA NA NA NA NA NA NA NA LTS-037 FAM184B, GPR78, LOC285484, SEPSECS-AS1, LINC01097, LINC01096, FAM200B, ZCCHC4, ANAPC4, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, SEPSECS, STX18, CYTL1, SH3TC1, DCAF16, LGI2, PPP2R2C, PI4K2B, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, FGFBP2, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.116118839073706 230 0.0473951330096025 0.742083618496588 8706 0.267238965285377 2 2 0 -6.73345591245144 LTS-037 NA NA NA NA LTS-037 chr4 25760681 25766965 6285 * SEL1L3 NA 0 NA 0.637 1 NA NA NA NA NA LTS-037 chr4 25766966 40504245 14737280 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, TLR6, PTTG2, LIAS, ARAP2, KLB, SMIM14, TBC1D1, SEL1L3, PDS5A, UBE2K, LOC344967, RBPJ, SMIM20, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, KLF3, RBM47, PGM2, C4orf19, TBC1D19, CHRNA9, N4BP2, NWD2, STIM2, WDR19, RFC1, RPL9, MIR574, TLR1, UGDH, RELL1, KLF3-AS1, TMEM156, TLR10, CCKAR, FAM114A1) 0.117602389971952 90 0.0424314325343413 0.704516259703449 3896 0.208903702805155 2 2 0 -7.251604380907 LTS-037 chr4 40504246 40752529 248284 * c(RBM47, NSUN7) NA 0 NA 1.382 1 NA NA NA NA NA LTS-037 chr4 40752530 40844448 91919 * c(APBB2, NSUN7) 0.0726425295554795 2 0.000707106781186548 1.26446712773105 259 0.331498058601471 17 16 1 -8.91617720507116 LTS-037 chr4 40844449 40892401 47953 * APBB2 NA 0 NA 0.845 1 NA NA NA NA NA LTS-037 chr4 40892402 41747716 855315 * c(UCHL1-AS1, LIMCH1, APBB2, UCHL1, PHOX2B) 0.113193934026008 6 0.0276797157981556 0.814024209691891 429 0.250835491062713 2 2 0 -6.80355486896717 LTS-037 chr4 41747717 41747820 104 * PHOX2B NA 0 NA 0.406 1 NA NA NA NA NA LTS-037 chr4 41747821 49063872 7316052 * c(ATP8A1, SLC30A9, CORIN, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, COX7B2, SLC10A4, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, ZAR1, KCTD8, BEND4, GRXCR1, OCIAD1, COMMD8, TMEM33, ATP10D, SLAIN2, GUF1, TEC, TXK, CWH43, PHOX2B) 0.124760947576349 84 0.0416152137848546 0.732134318407926 3796 0.225975631449319 2 2 0 -6.78312246856816 LTS-037 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.713709282634286 5 0.0324376324660109 2 NA NA -5.76462118452822 LTS-037 chr4 52709193 52714511 5319 * DCUN1D4 0.171 1 NA 0.621873056665066 17 0.191631501462941 2 2 0 -5.76714676771972 LTS-037 chr4 52714512 69363297 16648786 * c(FTLP10, EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, TMPRSS11B, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, LOC550113, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, NA NA NA NA NA NA NA NA NA LTS-037 LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.123744778417105 135 0.0529816743978624 0.739414718684669 5034 0.233869098613111 2 2 0 -6.7527223437792 LTS-037 NA NA NA NA LTS-037 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.057 1 NA NA NA NA NA LTS-037 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.24868108016279 43 0.372346153206004 4 NA NA -5.76566069862484 LTS-037 chr4 69512431 69512573 143 * character(0) NA 0 NA 0.855 1 NA NA NA NA NA LTS-037 chr4 69512574 115597754 46085181 * c(FAM47E, MIR1243, CSN1S2BP, THAP9-AS1, MIR3684, LINC01094, LINC01088, LINC00989, LOC100506746, LOC100507053, GIMD1, SEC24B-AS1, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, ENAM, STPG2-AS1, FAM13A, CDS1, SEC24B, CXCL13, PDLIM5, CENPE, RRH, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, CYP2U1, DDIT4L, PCAT4, ANTXR2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, NA NA NA NA NA NA NA NA NA LTS-037 LIN54, C4orf32, C4orf36, SLC9B2, CSN1S1, CSN2, CSN3, SLC9B1, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, SGMS2, AFM, AFP, DMP1, DSPP, EGF, EIF4E, ENPEP, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, METAP1, CNOT6L, C4orf22, EPGN, NPNT, LOC256880, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, PPA2, DAPP1, GK2, DKK2, NAAA, COQ2, SULT1B1, HPGDS, RPL34-AS1, FAM13A-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 GPRIN3, COX18, STPG2, CSN1S2AP, ANK2, GRID2, CXCL1, CXCL2, CXCL3, GRSF1, H2AFZ, HADH, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, CFI, SOWAHB, LRIT3, SLC10A6, HSD17B13, JCHAIN, CXCL8, PCNAP1, CXCL10, AREG, PRR27, AMTN, CCSER1, WDFY3-AS2, MANBA, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MIR302B, MTTP, MUC7, ATOH1, NFKB1, NKX6-1, CISD2, MRPS18C, COPS4, HSD17B11, LEF1, HERC5, PLAC8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LARP7, PDHA2, EMCN, PF4, PF4V1, PITX2, PKD2, NUDT9, NUP54, GAR1, UGT2B28, PPEF2, PPBP, TET2, ARHGEF38, ODAM, HERC6, MCUB, BANK1, SDAD1, PPP3CA, ZGRF1, AP1AR, BMP2K, SEPT11, PRKG2, MAPK10, BDH2, SMARCAD1, MEPE, PRDM8, UTP3, INTS12, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, OSTC, RAP1GDS1, RPL34, CXCL6, CXCL11, CXCL5, NEUROG2, SLC39A8, LEF1-AS1, SNCA-AS1, ETNPPL, MRPL1, BMP3, BMPR1B, SNCA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SPP1, STATH, SULT1E1, BTC, TACR3, MIR575, MIR577, LOC728040, UBE2D3, UGT2B4, UGT2B7, UGT8, ELOVL6, ARSJ, THAP9, GSTCD, SCD5, DNAJB14, FRAS1, ALPK1, CXXC4, PLA2G12A, CAMK2D, ARHGAP24, CASP6, SPARCL1, C4orf17, FAM175A, COL25A1, NAA11, GPAT3, CABS1, USO1, UNC5C, LAMTOR3, SLC4A4, HERC3, STBD1, CDKL2, FLJ20021, CCNG2, PAPSS1, AIMP1, MOB1B, TIFA, TRMT10A, TBCK, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.117564434836773 431 0.0466192886559364 0.747821808790257 22635 0.344504091562293 2 2 0 -6.74592813136447 LTS-037 NA NA NA NA LTS-037 chr4 115597755 119428120 3830366 * c(SNHG8, MIR1973, TRAM1L1, NDST4, SNORA24, UGT8, PRSS12, NDST3) 0.133895721076377 7 0.027131952696827 0.827155341978722 496 0.236679969672449 2 2 0 -7.45191337121371 LTS-037 chr4 119428121 119431050 2930 * character(0) NA 0 NA 0.55 1 NA NA NA NA NA LTS-037 chr4 119431051 119444079 13029 * CEP170P1 NA 0 NA 0.41936722251165 61 0.299244357995852 1 NA NA -5.76504620876746 LTS-037 chr4 119444080 119444190 111 * CEP170P1 NA 0 NA 0.833 1 NA NA NA NA NA LTS-037 chr4 119444191 189026673 69582483 * c(SCOC-AS1, CLDN24, PP12613, MIR2054, MIR1305, MIR3140, MIR4276, MIR3945, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, MIR4799, MIR3688-2, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, WDR17, CLCN3, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZFP42, SPATA4, ENPP6, CPE, ASB5, CTSO, ZNF827, SH3D19, MGAT4D, WWC2-AS2, NA NA NA NA NA NA NA NA NA LTS-037 FAM218A, C4orf45, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, SYNPO2, AGA, EDNRA, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, PRIMPOL, TRIML2, ETFDH, F11, FABP2, ACSL1, FAT1, FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, KIAA0922, TRIM2, ANP32C, SLC7A11, GAB1, ELMOD2, CCDC110, MFSD8, NOCT, FAM149A, FBXO8, GK3P, INTU, ARFIP1, PDLIM3, ZNF330, GLRB, GPM6A, LINC01091, CYP4V2, F11-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LINC01098, RNF175, GRIA2, SLC25A4, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, ANXA5, HMGB2, HPGD, LOC339975, LOC340017, PRSS48, ANKRD37, IL2, IL15, ING2, IRF2, KLKB1, LOC389247, TRIM61, HELT, LINC01061, C4orf3, FAM92A1P2, MAD2L1, SMAD1, MGST2, NR3C2, GUSBP5, C4orf47, GALNTL6, MTNR1A, NDUFC1, NEK1, NPY1R, NPY2R, NPY5R, SPOCK3, AADAT, FAM198B, MYOZ2, ASIC5, GALNT7, GATB, PLRG1, CLDN22, EXOSC9, PCDH18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 USP53, DKFZP434I0714, POU4F2, OTUD4, DCHS2, PPID, HPF1, MARCH1, LARP1B, BBS7, NEIL3, FBXW7, TMEM144, TMA16, UFSP2, MAML3, DDX60, CDKN2AIP, TENM3, TMEM184C, LRP2BP, PDGFC, FSTL5, STOX2, ANKRD50, RNF150, PCDH10, CFAP97, FNIP2, SH3RF1, METTL14, IL21, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPS3A, MSMO1, SLC7A11-AS1, LINC00616, SFRP2, SLED1, HHIP, TNRC18P1, CEP170P1, LOC645513, HHIP-AS1, C4orf51, FLJ38576, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIR578, TDO2, TLL1, TLR2, TLR3, TRPC3, LINC00290, LOC728175, CETN4P, FAM160A1, MIR3945HG, UCP1, VEGFC, NDNF, FAT4, ARHGAP10, CENPU, HAND2-AS1, MAP9, TNIP3, JADE1, GLRA3, WWC2, NAA15, ABHD18, CEP44, SETD7, SLC25A31, RAB33B, CASP3, SNX25, TTC29, MND1, SLC10A7, TKTL2, QRFPR, KIAA1109, USP38, SMARCA5, SORBS2, MGARP, CBR4, FHDC1, PDE5A, SAP30, INPP4B, CCNA2, SNORD73A, LOC90768, PRMT9, DDX60L, LRAT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NAF1, HAND2, RAPGEF2, MFAP3L, LRBA, SEC24D) 0.114320578001298 482 0.0434378940022014 0.750327229861602 23482 0.447248885946907 2 2 0 -6.75509372062962 LTS-037 NA NA NA NA LTS-037 chr4 189026674 189026698 25 * TRIML2 0.184 1 NA 0.288 1 NA NA NA NA NA LTS-037 chr4 189026699 190946083 1919385 * c(TRIML2, FRG1, TRIML1, LINC01060) 0.276010186968512 18 0.101091106259185 0.759900109430319 211 0.292115848077113 2 1 1 -7.9638101183183 LTS-037 chr4 190946084 190981567 35484 * character(0) NA 0 NA 0.769938955169708 17 0.542698574391954 2 NA NA -5.7645041522905 LTS-037 chr5 140347 191992 51646 * c(PLEKHG4B, LRRC14B) 0.39 1 NA 1.02131883998015 279 0.222619555848173 3 3 0 -5.76444162428952 LTS-037 chr5 191993 678224 486232 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.366714409592288 24 0.0583154682788341 0.982949485546653 778 0.274340396074385 3 2 1 -6.74838821184635 LTS-037 chr5 678225 712039 33815 * TPPP NA 0 NA 2.002 1 NA NA NA NA NA LTS-037 chr5 712040 770190 58151 * character(0) 0.246196717739516 6 0.141625798026584 2.46816230460451 70 1.08486019259355 9 7 2 -6.73468781860543 LTS-037 chr5 770191 770265 75 * character(0) 0.263 1 NA 0.66 1 NA NA NA NA NA LTS-037 chr5 770266 850594 80329 * ZDHHC11 0.415888707678518 13 0.0797105340012801 1.31970158705529 113 0.566613100778169 5 3 2 -6.74890815194589 LTS-037 chr5 850595 40715261 39864667 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR3650, MIR4458HG, SNHG18, ROPN1L-AS1, EGFLAM-AS2, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, SUB1, PAPD7, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, UBE2QL1, C5orf49, FAM173B, CMBL, DNAJC21, CTNND2, C5orf38, IRX2, TTC23L, DAB2, DAP, UGT3A2, ADAMTS16, NA NA NA NA NA NA NA NA NA LTS-037 DNAH5, RANBP3L, CCT5, PDZD2, FBXL7, ICE1, TTC33, AMACR, RICTOR, FYB, LINC01018, NIPBL, RAI14, GDNF, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, LOC340113, SLC6A18, IL7R, LIFR, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, NPR3, IRX4, TAS2R1, SLC45A2, RXFP3, ZFR, PMCHL1, FAM134B, FAM105A, MTMR12, NSUN2, WDR70, BRIX1, C5orf22, ANKH, PRLR, PRDM9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PTGER4, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, MRPL36, SKP2, SLC1A3, ANKRD33B, C5orf42, SLC6A3, BRD9, SRD5A1, TARS, MIR580, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, C9, FASTKD3, IRX1, ZDHHC11, LPCAT1, SPEF2, CLPTM1L, ADAMTS12, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, OSMR, LMBRD2, TRIP13, NUP155) 0.347599920434803 264 0.0740584634512273 1.03108634483883 12837 0.295717455912944 3 2 1 -6.75206475050468 LTS-037 NA NA NA NA LTS-037 chr5 40715262 40715267 6 * TTC33 NA 0 NA 0.832 1 NA NA NA NA NA LTS-037 chr5 40715268 40763139 47872 * c(TTC33, PRKAA1) NA 0 NA 0.801411385340481 109 0.111115222146169 2 NA NA -5.77786219074485 LTS-037 chr5 40763140 40764654 1515 * PRKAA1 NA 0 NA 0.981 1 NA NA NA NA NA LTS-037 chr5 40764655 44809162 4044508 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, LOC153684, NIM1K, FGF10, NNT, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, ZNF131, CARD6) 0.363278654925431 32 0.058637753100794 0.986694005908514 2274 0.28454585517019 3 2 1 -6.78603132249264 LTS-037 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.13977024688133 151 0.319069074572867 3 NA NA -5.81898568166387 LTS-037 chr5 49692017 49694713 2697 * EMB 0 1 NA 0.96339409527207 50 0.421839954659275 3 3 0 -5.76444911504454 LTS-037 chr5 49694714 63626310 13931597 * c(LRRC70, MIR449C, MIR5687, IPO11-LRRC70, CCNO, FST, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, RNF138P1, KIF2A, MAP3K1, MOCS2, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PELO, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, LOC642366, SMIM15, GPBP1, NA NA NA NA NA NA NA NA NA LTS-037 MIR449B, MIR581, PARP8, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.342666220246733 161 0.0646045195330743 0.974965861395654 5148 0.301296752679967 3 2 1 -7.03012471630866 LTS-037 NA NA NA NA LTS-037 chr5 63626311 63665383 39073 * RNF180 NA 0 NA 1.873 1 NA NA NA NA NA LTS-037 chr5 63665384 63667906 2523 * RNF180 0.296 1 NA 1.59635826572414 55 0.550580370252831 5 5 0 -5.76441016729248 LTS-037 chr5 63667907 68513801 4845895 * c(FAM159B, LOC100303749, CWC27, ADAMTS6, SREK1, PPWD1, RNF180, SREK1IP1, TRIM23, MAST4, RGS7BP, CD180, PIK3R1, SGTB, ERBIN, NLN, CENPK, SLC30A5, CENPH, TRAPPC13, CCNB1, MRPS36) 0.356053163198729 46 0.0790908027046367 0.991549855428497 2601 0.41550785891461 3 2 1 -6.75728189572811 LTS-037 chr5 68513802 68522054 8253 * MRPS36 NA 0 NA 1.677 1 NA NA NA NA NA LTS-037 chr5 68522055 69373289 851235 * c(NA, OCLN, CDK7, MARVELD2, CCDC125, RAD17, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, SERF1A, MRPS36) 0.378737292057486 14 0.162377527812384 1.29723765644795 580 0.689174473956755 5 3 2 -6.79627887402462 LTS-037 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.002 1 NA NA NA NA NA LTS-037 chr5 69717474 70307196 589723 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.551678055144512 40 0.373070178831454 1 NA NA -5.85373543824751 LTS-037 chr5 70307197 90261268 19954072 * c(GUSBP9, CKMT2-AS1, NCRUPAR, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, ANKRD31, SERINC5, FAM169A, RNU5E-1, NA NA NA NA NA NA NA NA NA LTS-037 NBPF22P, GTF2H2, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, ADGRV1, UTP15, ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SCAMP1, CARTPT, ZFYVE16) 0.358331359176882 216 0.0744860806181734 1.01137001080077 9857 0.56844486247968 3 2 1 -6.74397002509942 LTS-037 NA NA NA NA LTS-037 chr5 90261269 96367679 6106411 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, ADGRV1, SLF1, TTC37) 0.36496633731564 60 0.0545616429495661 0.942681537771996 2670 0.22524321306217 3 2 1 -7.24198194107796 LTS-037 chr5 96367680 96371042 3363 * character(0) 0.478 1 NA 1.32591520704163 69 0.345632595836023 4 4 0 -5.76441139283895 LTS-037 chr5 96371043 118965554 22594512 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, NA NA NA NA NA NA NA NA NA LTS-037 FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.345446579637868 183 0.0808377806001212 0.999505716093372 6694 0.314356353749666 3 2 1 -6.86387607475139 LTS-037 NA NA NA NA LTS-037 chr5 118965555 118968367 2813 * FAM170A NA 0 NA 1.192 1 NA NA NA NA NA LTS-037 chr5 118968368 130495374 11527007 * c(KIAA1024L, LOC100505841, MIR4633, MIR4460, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, ADAMTS19, FBN2, SLC27A6, SNX24, HINT1, CHSY3, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, ISOC1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.360333539662764 62 0.0619419155257185 1.0527126070675 3291 0.360554082842072 3 2 1 -6.76147871659422 LTS-037 chr5 130495375 130496377 1003 * HINT1 NA 0 NA 0.734 1 NA NA NA NA NA LTS-037 chr5 130496378 134369982 3873605 * c(MIR1289-2, MIR3936, MIR3661, MIR4461, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, CSF2, FSTL4, SEPT8, ACSL6, JADE2, GDF9, UQCRQ, AFF4, HINT1, HSPA4, CATSPER3, IL3, IL4, IL5, IL13, IRF1, C5orf56, SAR1B, CDKL3, RAPGEF6, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, CCNI2, SKP1, SLC22A4, SLC22A5, TCF7, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, PDLIM4, P4HA2, LYRM7, NA NA NA NA NA NA NA NA NA LTS-037 CDKN2AIPNL, FNIP1, DDX46) 0.338879958942779 88 0.0776816163335731 0.973267641019819 4629 0.263567517642186 3 2 1 -6.87862449374756 LTS-037 NA NA NA NA LTS-037 chr5 134369983 134571958 201976 * c(C5orf66, C5orf66-AS2) NA 0 NA 1.066 1 NA NA NA NA NA LTS-037 chr5 134571959 137087498 2515540 * c(VTRNA2-1, MIR874, C5orf66, HNRNPA0, DCANP1, SLC25A48, FBXL21, KLHL3, C5orf66-AS2, LOC340074, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, TRPC7, SPOCK1, TGFBI, MYOT, CXCL14, H2AFY, SMAD5-AS1) 0.371338493320312 40 0.0598215294406235 1.07281826147379 1227 0.240031404349558 3 2 1 -6.79967595679049 LTS-037 chr5 137087499 137087504 6 * c(HNRNPA0, MYOT) NA 0 NA 0.89 1 NA NA NA NA NA LTS-037 chr5 137087505 139919066 2831562 * c(LINC01024, KIF20A, BRD8, HNRNPA0, CTNNA1, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, LRRTM2, GFRA3, SNORD63, SNORA74A, PKD2L2, HSPA9, TMEM173, PROB1, ANKHD1-EIF4EBP3, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, ANKHD1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, CDC23, MYOT, NRG2, MATR3, CDC25C, SLC23A1) 0.354397745695758 33 0.0481595360140742 0.987473082579717 3388 0.23579582881995 3 2 1 -6.79228422473706 LTS-037 chr5 139919067 139919129 63 * c(ANKHD1-EIF4EBP3, ANKHD1) NA 0 NA 1.382 1 NA NA NA NA NA LTS-037 chr5 139919130 148810355 8891226 * c(GNPDA1, SRA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, APBB3, TCERG1, SPINK5, SLC35A4, SCGB3A2, AFAP1L1, GRPEL2, GPR151, SPINK13, JAKMIP2-AS1, ZMAT2, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, STK32A, FGF1, ABLIM3, ARHGAP26, HARS2, PCDHGA12, PCDHB5, IL17B, RELL2, NR3C1, PCDHB1, HARS, HTR4, IK, DND1, C5orf46, SPINK6, ANKHD1-EIF4EBP3, MIR143, SPINK14, NDUFA2, PCDH1, PCDHGC3, PCDH12, LARS, NA NA NA NA NA NA NA NA NA LTS-037 RBM27, POU4F3, PCDHB18P, PCDHB17P, WDR55, ANKHD1, PPP2R2B, TMCO6, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, CARMN, LOC729080, PCYOX1L, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, EIF4EBP3, PCDHGB4, HDAC3, FCHSD1, CD14, RNF14, PCDHGA8, PCDHA9, KIAA0141, JAKMIP2) 0.347881937809998 214 0.0657563141640539 1.03605473798311 8575 1.52991281597291 3 2 1 -6.7542715654357 LTS-037 NA NA NA NA LTS-037 chr5 148810356 148871762 61407 * CARMN NA 0 NA 1.447 1 NA NA NA NA NA LTS-037 chr5 148871763 149310650 438888 * c(PPARGC1B, CSNK1A1, ARHGEF37, PDE6A) 0.226640819697536 20 0.0454149001748846 1.72310551857354 736 0.55111847554814 5 4 1 -6.74624611857353 LTS-037 chr5 149310651 175388181 26077531 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, G3BP1, TNIP1, CDX1, SLU7, CPLX2, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, C5orf47, C5orf58, LSM11, ZNF300P1, NUDCD2, UBLCP1, CSF1R, ADRA1B, NKX2-5, SLC36A2, CREBRF, PPP1R2P3, FAM71B, RNF145, DOCK2, DRD1, SLC26A2, DUSP1, EBF1, SLC36A1, FABP6, FAT2, FOXI1, HMGXB3, ATP10B, WWC1, FBXW11, LARP1, NA NA NA NA NA NA NA NA NA LTS-037 GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, NDST1, ARSI, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, PDE6A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PDGFRB, HMP19, NEURL1B, SPDL1, THG1L, GALNT10, RBM22, NMUR2, ERGIC1, TENM2, RARS, RPS14, ZBED8, SGCD, RANBP17, SLC6A7, SLIT3, BNIP1, SPARC, SNORA74B, STK10, MIR585, TCOF1, TTC1, CCNJL, PANK3, SAP30L, CPEB4, CAMK2A, TIGD6, THOC3, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1, CD74) 0.348830470581139 315 0.0671050491021618 1.01905044585957 13745 0.49008447830354 3 2 1 -6.75598285083335 LTS-037 NA NA NA NA LTS-037 chr5 175388182 175512085 123904 * c(FAM153B, THOC3) 0.273 1 NA 0.656295785934168 67 0.441288626857273 2 2 0 -5.77023987065645 LTS-037 chr5 175512086 177075865 1563780 * c(MIR4281, LOC100507387, RGS14, LMAN2, B4GALT7, GPRIN1, CLTB, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, FAF2, ZNF346, EIF4E1B, TSPAN17, PRELID1, ARL10, GRK6, HK3, PRR7-AS1, PFN3, SIMC1, DDX41, NOP16, UIMC1, RAB24, FAM193B, TMED9, CDHR2, KIAA1191, LOC643201, NSD1, SLC34A1, SNCB, DOK3, PRR7, MXD3, UNC5A, PDLIM7) 0.355832384605345 67 0.0502354699623064 0.982963452894483 3190 0.264703421032058 3 2 1 -6.76509229205943 LTS-037 chr5 177075866 177098999 23134 * LOC202181 NA 0 NA 0.601 1 NA NA NA NA NA LTS-037 chr5 177099000 177210850 111851 * c(LOC202181, FAM153A) NA 0 NA 0.599811835299073 49 0.389779729135441 2 NA NA -5.78450202237408 LTS-037 chr5 177210851 177220301 9451 * character(0) NA 0 NA 2.531 1 NA NA NA NA NA LTS-037 chr5 177220302 180028596 2808295 * c(MIR1229, MGAT4B, ZNF354B, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MIR340, C5orf45, NHP2, RNF130, MAPK9, PROP1, CLK4, CNOT6, GMCL1P1, CBY3, RMND5B, FAM153C, ZNF354A, LOC728554, AACSP1, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.354434845352451 71 0.0490246765770146 1.00558007106377 3307 0.288404318228725 3 2 1 -6.75178879633097 LTS-037 chr5 180028597 180374817 346221 * c(HEIH, OR2Y1, FLT4, MGAT1, ZFP62, LINC00847, BTNL8) 0.238410493337115 6 0.0708406662870981 1.59733719968019 399 0.361070669258301 5 4 1 -6.73787236901784 LTS-037 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 2.956 1 NA NA NA NA NA LTS-037 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 2.92149840926864 63 0.550463642031112 10 NA NA -5.76455391768749 LTS-037 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 1.7 1 NA NA NA NA NA LTS-037 chr5 180430826 180488160 57335 * c(BTNL3, BTNL9) 0.22490568627193 7 0.023873675480587 1.48015551715051 154 0.439816472371515 5 4 1 -6.78733664969591 LTS-037 chr5 180488161 180668751 180591 * c(MIR4638, RACK1, BTNL9, OR2V1, OR2V2, TRIM7, TRIM41) 0.381086293286947 4 0.0209204843793509 0.997330009845536 310 0.233026043670911 3 2 1 -7.27828251809353 LTS-037 chr5 180668752 180688111 19360 * c(RACK1, SNORD95, SNORD96A, TRIM52) NA 0 NA 1.05523380603626 83 0.231249266028015 3 NA NA -5.76455215598916 LTS-037 chr6 203389 311938 108550 * DUSP22 0.373 1 NA 1.25469620095067 25 0.276256179418066 4 4 0 -5.76626098092004 LTS-037 chr6 311939 367352 55414 * DUSP22 0.263153190169648 10 0.0613920914197333 1.11720209474833 92 0.208129817715905 4 3 1 -6.8121743523644 LTS-037 chr6 367353 367462 110 * character(0) NA 0 NA 1.23987406538586 4 0.12264854938672 4 NA NA -5.76442499352177 LTS-037 chr6 367463 367481 19 * character(0) 0.048 1 NA 3.783 1 NA NA NA NA NA LTS-037 chr6 367482 3270510 2903029 * c(LOC100507194, GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, TUBB2B, IRF4, PSMG4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, SLC22A23, BPHL, TUBB2A, RIPK1, FOXQ1) 0.0757628457146679 76 0.0596512363660637 1.43328309588876 1478 0.489559660270152 4 4 0 -6.80636015239171 LTS-037 chr6 3270511 3270557 47 * SLC22A23 0.08 1 NA 1.35963451340734 3 0.196978002155909 4 4 0 -5.76441094466578 LTS-037 chr6 3270558 25082109 21811552 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, ECI2, CAP2, FARS2, RPP40, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, FAM217A, SIRT5, RNF144B, FAM50B, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, MYLIP, HIVEP1, ID4, C6orf52, KAAG1, JARID2, NA NA NA NA NA NA NA NA NA LTS-037 NHLRC1, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, SLC35B3, GMNN, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, TDP2, GFOD1, ELOVL2, CDKAL1, PAK1IP1, ACOT13, PRL, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SOX4, SSR1, MIR548A1, TFAP2A, TPMT, HULC, NBAT1, DEK, ALDH5A1, TXNDC5, C6orf62, TMEM14B, RIOK1, DTNBP1, CMAHP, ADTRP, PRPF4B, GCM2, CD83, CDYL, LY86, EEF1E1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FAM65B, KIAA0319, NUP153) 0.0543072215266692 240 0.0256801587688493 1.5377145254874 9139 0.718679589576083 5 5 0 -6.77401630037634 LTS-037 NA NA NA NA LTS-037 chr6 25082110 25482428 400319 * c(CARMIL1, CMAHP) 0.0467584942237279 9 0.0163486322907385 1.93659972678755 139 0.669418765714816 6 6 0 -6.73809208127509 LTS-037 chr6 25482429 25495517 13089 * CARMIL1 NA 0 NA 2.12148230991773 23 0.339359679536125 7 NA NA -5.76444834026435 LTS-037 chr6 25495518 25500300 4783 * CARMIL1 NA 0 NA 0.798 1 NA NA NA NA NA LTS-037 chr6 25500301 25538188 37888 * CARMIL1 0.125 1 NA 0.767271487444958 43 0.210064982299485 2 2 0 -5.76495736638518 LTS-037 chr6 25538189 29910423 4372235 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, ZSCAN23, NKAPL, TOB2P1, HIST1H2BA, GPX6, OR2B6, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, ZKSCAN4, GUSBP2, VN1R10P, HIST1H2APS1, NA NA NA NA NA NA NA NA NA LTS-037 HCG11, BTN2A3P, CARMIL1, ZSCAN31, ZNF192P1, SLC17A1, BTN1A1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZNF204P, ZNF322, ZKSCAN3, ZSCAN16, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, HIST1H4G, PGBD1, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, ZSCAN12) 0.120823332901344 152 0.037943482557553 0.727598643815092 4692 0.453272050255879 2 2 0 -6.75232962604768 LTS-037 NA NA NA NA LTS-037 chr6 29910424 29910429 6 * character(0) 0.11 1 NA 0.382 1 NA NA NA NA NA LTS-037 chr6 29910430 29976340 65911 * character(0) 0.114086833980599 38 0.0675734519486045 0.461594958821937 85 0.29550064103406 2 2 0 -6.83386001039313 LTS-037 chr6 29976341 29976777 437 * character(0) NA 0 NA 0.794 1 NA NA NA NA NA LTS-037 chr6 29976778 31170914 1194137 * character(0) 0.1135806768497 123 0.0352074637986107 0.749251762483812 3095 0.22891662790065 2 2 0 -6.73511599284199 LTS-037 chr6 31170915 31171167 253 * character(0) 0.218 1 NA 0.655668634159965 7 0.156757774926796 2 2 0 -5.76450564729024 LTS-037 chr6 31171168 31171735 568 * character(0) 0.106 1 NA 0.585218394874123 12 0.178543603026875 2 2 0 -5.76501590745846 LTS-037 chr6 31171736 31236568 64833 * character(0) NA 0 NA 2.014 1 NA NA NA NA NA LTS-037 chr6 31236569 31239016 2448 * character(0) 0.337217578758253 4 0.105407147132757 3.07015522289904 42 52.0211775349466 18 12 6 -6.73310357135909 LTS-037 chr6 31239017 31239049 33 * character(0) 0.403 1 NA 0.178 1 NA NA NA NA NA LTS-037 chr6 31239050 31239449 400 * character(0) 0.339642655420427 2 0.156977705423414 0.290987226806288 4 0.381496505008019 6 4 2 -6.74045796876827 LTS-037 chr6 31239450 31239722 273 * character(0) 0.054 1 NA 0.378112452118679 5 0.315988923856518 1 1 0 -5.76446847073097 LTS-037 chr6 31239723 31324955 85233 * character(0) 0.110903603738415 7 0.025785747262873 0.452076833781144 63 0.237568462118919 2 2 0 -6.96373009429246 LTS-037 chr6 31324956 31324995 40 * character(0) NA 0 NA 0.679 1 NA NA NA NA NA LTS-037 chr6 31324996 32427927 1102932 * character(0) 0.118109708095149 171 0.0530921040930557 0.739273884127789 4613 0.241410550233465 2 2 0 -6.73528196496524 LTS-037 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 0.12 1 NA NA NA NA NA LTS-037 chr6 32485401 32546857 61457 * HLA-DRB5 0.202494830273299 16 0.147575503274313 0.407018999706573 78 0.534679296447833 1 1 0 -6.74132971742263 LTS-037 chr6 32546858 32546863 6 * HLA-DRB5 0.207 1 NA 1.15 1 NA NA NA NA NA LTS-037 chr6 32546864 32605151 58288 * HLA-DRB5 0.11644995201715 31 0.125042917363582 0.610232443339927 88 0.599816284896433 2 2 0 -6.73685414650825 LTS-037 chr6 32605152 32605164 13 * character(0) NA 0 NA 0.171 1 NA NA NA NA NA LTS-037 chr6 32605165 32610925 5761 * HLA-DQA1 0.147592422834205 49 0.0912992807938233 0.374136948238863 130 0.532609806763996 8 7 1 -6.77677974289497 LTS-037 chr6 32610926 32610934 9 * HLA-DQA1 0.012 1 NA 2.669 1 NA NA NA NA NA LTS-037 chr6 32610935 32628738 17804 * HLA-DQA1 0.0839617106531359 13 0.0332770036866148 0.648789858382904 64 0.757435457463025 3 3 0 -6.7374149252954 LTS-037 chr6 32628739 32628745 7 * character(0) NA 0 NA 0.72 1 NA NA NA NA NA LTS-037 chr6 32628746 32714143 85398 * character(0) 0.132 1 NA 0.822577063859485 69 0.610476755259938 2 2 0 -5.76584567520234 LTS-037 chr6 32714144 32714164 21 * character(0) 0.312 1 NA 0.674 1 NA NA NA NA NA LTS-037 chr6 32714165 32732677 18513 * character(0) 0.34168264754975 9 0.0743916064560452 0.764294095194203 65 0.223241119859568 3 2 1 -6.78973623323796 LTS-037 chr6 32732678 32783086 50409 * character(0) 0.123 1 NA 0.694019282110102 37 0.152354011252559 2 2 0 -5.77038446588496 LTS-037 chr6 32783087 33035512 252426 * character(0) 0.130252339130677 37 0.071105924876571 0.665713504075409 677 0.710325095346049 2 2 0 -6.76398133153131 LTS-037 chr6 33035513 33048457 12945 * character(0) 0.102029352194537 2 0.0912167747730646 1.1406814983336 68 4.35543042853269 12 11 1 -6.73365774196793 LTS-037 chr6 33048458 33054721 6264 * character(0) 0.222554754913321 45 0.0820863243571342 0.467066446961557 109 1.93271859940678 14 11 3 -6.73891316506139 LTS-037 chr6 33054722 33054764 43 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-037 chr6 33054765 35749044 2694280 * c(MIR1275, LINC01016, RPS10-NUDT3, MIR5690, NUDT3, IP6K3, FANCE, ARMC12, C6orf1, LEMD2, SCUBE3, FKBP5, ANKS1A, SPDEF, LOC285847, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, LINC00336, MLN, GGNBP1, RPL10A, DEF6, PPARD, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2) 0.119294825531275 109 0.0491195207535882 0.725707360746298 4335 0.543123564566786 2 2 0 -6.74046594661661 LTS-037 chr6 35749045 35754774 5730 * CLPSL1 NA 0 NA 1.39 1 NA NA NA NA NA LTS-037 chr6 35754775 35773187 18413 * c(CLPS, LHFPL5, CLPSL1) 0.330090042444123 4 0.0543775382549327 1.24819534127498 44 0.299049664608988 6 4 2 -6.81818319989272 LTS-037 chr6 35773188 37599840 1826653 * c(MIR3925, MIR4462, CDKN1A, STK38, SLC26A8, MAPK14, CCDC167, TMEM217, FGD2, PI16, C6orf89, KCTD20, PXT1, LHFPL5, CMTR1, MTCH1, BRPF3, PNPLA1, C6orf222, RAB44, ETV7, PPIL1, PIM1, TBC1D22B, MAPK13, CPNE5, SRSF3, SRPK1, RNF8) 0.117812976008884 65 0.0473074945274165 0.705608815251235 2450 0.212460911471206 2 2 0 -6.79804878908768 LTS-037 chr6 37599841 37599844 4 * character(0) NA 0 NA 1.089 1 NA NA NA NA NA LTS-037 chr6 37599845 38139032 539188 * c(BTBD9, MDGA1, ZFAND3) 0.135910971052636 6 0.0318459835248759 0.789168914190518 388 0.230929606253292 2 2 0 -7.00271644125876 LTS-037 chr6 38139033 38140063 1031 * BTBD9 0.086 1 NA 0.881283071939146 19 0.21317082626286 3 3 0 -5.76473503341119 LTS-037 chr6 38140064 42326921 4186858 * c(LOC100131047, TOMM6, MIR4641, FRS3, APOBEC2, BTBD9, FOXP4, TAF8, DNAH8, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, USP49, GLO1, GLP1R, TREML4, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, PGC, TREM2, TREM1, MRPS10, SAYSD1, TRERF1, LRFN2, C6orf132, BYSL, TDRG1, TFEB, TREML2, KCNK16, KCNK5, CCND3, KCNK17, NCR2, MED20) 0.109239727111034 88 0.0392176828199733 0.754229688883842 3633 0.273109628479887 2 2 0 -6.75412312451641 LTS-037 chr6 42326922 42531728 204807 * TRERF1 NA 0 NA 1.14 1 NA NA NA NA NA LTS-037 chr6 42531729 42952340 420612 * c(CNPY3, PTCRA, UBR2, GLTSCR1L, GNMT, RPL7L1, MEA1, C6orf226, ATP6V0CP3, PEX6, PPP2R5D, PRPH2, TBCC) 0.0555832764376553 15 0.0255423085058795 1.2584210116787 838 0.365420053855914 4 4 0 -6.81720769214307 LTS-037 chr6 42952341 42952347 7 * c(MEA1, PPP2R5D) NA 0 NA 0.557 1 NA NA NA NA NA LTS-037 chr6 42952348 56918855 13966508 * c(LINC01512, ANKRD66, MIR4647, MIR4642, MIR5685, MLIP-IT1, RCAN2, CRISP3, DNPH1, SLC22A7, CAPN11, IL17F, EFHC1, KLHDC3, C6orf141, CRISP1, TCTE1, SLC29A1, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, TDRD6, SPATS1, C6orf223, RSPH9, LRRC73, FAM83B, ADGRF2, ICK, ENPP4, CUL9, CD2AP, ZNF318, DEFB110, DEFB112, DEFB113, DEFB114, YIPF3, FBXO9, ADGRF1, TNFRSF21, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, NA NA NA NA NA NA NA NA NA LTS-037 HSP90AB1, SLC35B2, IL17A, GLYATL3, GFRAL, CRIP3, TRAM2-AS1, KLHL31, MIR206, MCM3, MEA1, MEP1A, TMEM151B, PTCHD4, MIR133B, MUT, NFKBIE, MRPL2, CYP39A1, PGK2, PKHD1, CLIC5, POLH, HMGCLL1, GTPBP2, CENPQ, MRPS18A, LRRC1, PPP2R5D, TMEM63B, AARS2, XPO5, PTK7, KIAA1586, ENPP5, RHAG, ELOVL5, RPS16P5, MRPL14, BMP5, DLK2, DST, SRF, MIR586, TFAP2B, CRISP2, LOC730101, GSTA7P, VEGFA, PLA2G7, COL21A1, TFAP2D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TTBK1, SUPT3H, GCM1, PAQR8, RUNX2, RRP36, ABCC10, KLC4, MLIP, TJAP1, SLC25A27, POLR1C, MAD2L1BP, TRAM2, CUL7, CDC5L) 0.126426774199737 157 0.0625901727429435 0.751920780570171 10159 0.216878285388517 2 2 0 -6.78004750641807 LTS-037 NA NA NA NA LTS-037 chr6 56918856 57244672 325817 * c(ZNF451, RAB23, PRIM2, KIAA1586, BAG2) 0.468 1 NA 0.707923212397719 469 0.16212819063238 2 2 0 -5.78143346613842 LTS-037 chr6 57244673 57512678 268006 * PRIM2 0.359233037151262 47 0.0536873465058398 0.953496558813354 108 0.377260653792528 3 2 1 -6.73972783505074 LTS-037 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.698257017185685 19 0.139336858849043 2 NA NA -5.87207208527697 LTS-037 chr6 62390154 63921853 1531700 * KHDRBS2 0.141 1 NA 0.755731820502902 87 0.275847102875238 2 2 0 -5.76808136535821 LTS-037 chr6 63921854 122749157 58827304 * c(LIN28B-AS1, TRAPPC3L, KHDC1L, TSTD3, LOC100287632, HMGN3-AS1, MIR2113, LOC100422737, MIR4282, LOC100506804, MIR4464, MIR4643, KCNQ5-AS1, LOC100996634, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, CGA, PNRC1, ASCC3, BVES, SEC63, GTF3C6, MRAP2, RWDD2A, KLHL32, MB21D1, NUS1, SLC16A10, CNR1, COL9A1, COL10A1, COL12A1, COL19A1, COX7A2, RIPPLY2, IRAK1BP1, B3GAT2, SDHAF4, CD109, PM20D2, SRSF12, KHDC3L, CFAP206, BVES-AS1, PRSS35, NA NA NA NA NA NA NA NA NA LTS-037 LCA5, EEF1A1, AIM1, EPHA7, C6orf163, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CEP162, ANKRD6, RIMS1, DOPEY1, ZNF292, FOXO3, CDK19, MDN1, TSPYL4, UFL1, PHF3, ORC3, BRD7P3, FRK, VGLL2, LACE1, FYN, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, MTO1, ASF1A, PNISR, IBTK, SENP6, AMD1, FBXL4, SLC17A5, SNORD50A, GJA1, FILIP1, SESN1, GPR6, CEP57L1, PPIL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LINC01268, FLJ34503, DCBLD1, LOC285762, OSTM1, GRIK2, NDUFAF4, DSE, HDAC2, HSF2, HTR1B, HTR1E, DPPA5, RSPH4A, EYS, IMPG1, GJB7, KPNA5, SNHG5, NA, LINC00222, CEP85L, LIN28B, LAMA4, MIR30A, MIR30C2, MARCKS, MAN1A1, ME1, LOC441155, OOEP, FAM26F, SLC25A51P1, GSTM2P1, RFPL4B, MYO6, NT5E, CYB5R4, TUBE1, C6orf203, CDC40, RWDD1, UBE2J1, LGSN, COQ3, PGM3, PLN, POU3F2, PHIP, SOBP, AKIRIN2, QRSL1, PREP, DDX43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FAM46A, TMEM30A, LMBRD1, KCNQ5, RARS2, PDSS2, GOPC, SMIM8, LYRM2, SNX14, HACE1, FAM135A, BEND3, ADGRB3, RRAGD, PRDM13, BCKDHB, REV3L, BACH2, SMAP1, RNY4, ROS1, FAM229B, PRDM1, LINC01590, POPDC3, TSG1, TRAF3IP2-AS1, MICAL1, SIM1, SMPD2, ELOVL4, MAP3K7, SNORD50B, MIR548B, NR2E1, TPBG, TSPYL1, TTK, MCHR2-AS1, TPI1P3, METTL24, PTP4A1, OGFRL1, FAM184A, MANEA, LINC00472, KHDC1, GPR63, SPACA1, SH3BGRL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ARMC2, RPF2, MCHR2, FAXC, GJA10, RTN4IP1, USP45, DDO, SLC22A16, SNX3, RNGTT, CD164, WISP3, CCNC, WASF1, LINC01621, UBE3D, TBX18, MFSD4B, HMGN3, FHL5, ATG5, ZBTB24, SNAP91, FIG4, CASP8AP2) 0.119391549702884 406 0.0471991058394674 0.73379209002033 22460 0.260919862598615 2 2 0 -6.81214039086936 LTS-037 NA NA NA NA LTS-037 chr6 122749158 125584585 2835428 * c(TRDN, SMPDL3A, CLVS2, RNF217, NKAIN2, FABP7, HSF2, PKIB, SERINC1, TPD52L1, RNF217-AS1) 0.119108069401112 38 0.0556485619459945 0.807563318961139 1156 0.289397187595473 2 2 0 -6.87552510290263 LTS-037 chr6 125584586 150385915 24801330 * c(UST-AS1, LOC100130476, LINC00271, LOC100132735, NHEG1, MIR3145, MIR3668, MIR3662, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, MIR4465, RAET1E-AS1, MIR5695, UST, CITED2, HBS1L, RAB32, KATNA1, MTFR2, TMEM200A, GINM1, IL22RA2, SLC18B1, ADAT2, TAAR1, STXBP5, NCOA7, HINT3, RAET1E, CTGF, LOC153910, ZC2HC1B, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, OLIG3, TXLNB, EPB41L2, EYA4, TAB2, SASH1, HEY2, HEBP2, NA NA NA NA NA NA NA NA NA LTS-037 FUCA2, TMEM244, SHPRH, CCDC28A, MOXD1, PDE7B, LINC00326, PHACTR2-AS1, GRM1, HIVEP2, TAAR6, SLC35D3, ZC3H12D, IFNGR1, ECT2L, NUP43, C6orf58, RAET1G, ARG1, HMGA1P7, SUMO4, CENPW, SOGA3, THEMIS, SAMD5, LAMA2, MAP3K5, FLJ46906, MYB, NMBR, HDDC2, PCMT1, AIG1, VTA1, ENPP1, ENPP3, HECA, PEX7, PLAGL1, IL20RA, AHI1, VNN3, ECHDC1, HYMAI, ADGRG6, ARFGEF3, NHSL1, PTPRK, ABRACL, PBOV1, SNORA33, TRMT11, RPS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PERP, LOC643623, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, TCF21, TNFAIP3, TPD52L1, KATNBL1P6, STXBP5-AS1, UTRN, ULBP3, OR2A4, EPM2A, ADGB, ULBP2, ULBP1, RNF146, SF3B5, TAAR8, FBXO30, STX7, L3MBTL3, RSPO3, LRP11, LTV1, REPS1, PEX3, PPIL4, STX11, VNN2, VNN1, TAAR5, MAP7, LATS1, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, TBPL1, KIAA0408, PHACTR2, BCLAF1) 0.133363645118675 212 0.0591591442287846 0.725642787489689 11739 0.233321211199375 2 2 0 -6.93358678849599 LTS-037 NA NA NA NA LTS-037 chr6 150385916 150386523 608 * ULBP3 NA 0 NA 0.831 1 NA NA NA NA NA LTS-037 chr6 150386524 150726512 339989 * c(IYD, ULBP3, PPP1R14C) 0.108403796155798 19 0.0388876023178993 0.916266083695076 290 0.357470297694011 2 2 0 -6.8200417422556 LTS-037 chr6 150726513 150726655 143 * character(0) NA 0 NA 0.702 1 NA NA NA NA NA LTS-037 chr6 150726656 167787957 17061302 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, ESR1, SCAF8, SYNE1, MTHFD1L, IPCEF1, TIAM2, FBXO5, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, NA NA NA NA NA NA NA NA NA LTS-037 SNX9, MPC1, PLG, UNC93A, MTRF1L, RMND1, AGPAT4, TULP4, PLEKHG1, ARID1B, TMEM181, ZBTB2, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, TCP10, DYNLT1, TMEM242, LOC729603, EZR, VIP, ARMT1, ZDHHC14, AGPAT4-IT1, CCDC170, MYCT1, LPAL2, RSPH3, TTLL2, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP, AKAP12) 0.122101739034225 209 0.044921047780265 0.740397090584647 9051 0.23106631853587 2 2 0 -6.74964488031656 LTS-037 NA NA NA NA LTS-037 chr6 167787958 167787960 3 * TCP10 NA 0 NA 0.616 1 NA NA NA NA NA LTS-037 chr6 167787961 167789520 1560 * TCP10 0.172611719721492 4 0.16181161886589 0.427172457645292 53 0.332904698767588 1 1 0 -6.73782335382082 LTS-037 chr6 167789521 170070878 2281358 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.151708032024457 35 0.0817191542300043 0.788464758543913 1152 0.226808202236806 2 2 0 -6.94531172042838 LTS-037 chr6 170070879 170072349 1471 * WDR27 NA 0 NA 0.513 1 NA NA NA NA NA LTS-037 chr6 170072350 170890384 818035 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.111852186202661 8 0.0513932666517984 0.692328614724218 614 0.174785575329101 2 2 0 -6.81344409920227 LTS-037 chr6 170890385 170893599 3215 * PDCD2 NA 0 NA 0.667793179404731 47 0.23068770813895 2 NA NA -5.76481932434548 LTS-037 chr7 193047 228004 34958 * FAM20C NA 0 NA 1.04968327237042 40 0.379440813262399 3 NA NA -5.76447014902325 LTS-037 chr7 228005 331086 103082 * c(WI2-2373I1.2, FAM20C) 0.446 1 NA 1.2546812554112 89 0.234875336394816 4 4 0 -5.76684263166152 LTS-037 chr7 331087 4845312 4514226 * c(WI2-2373I1.2, MIR4648, MIR4655, MIR4656, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, SDK1, FOXK1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, RADIL, PRKAR1B, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, CARD11, EIF3B, ZFAND2A, COX19, AP5Z1) 0.450616891103468 195 0.0525028594566377 1.27546069972176 4049 0.333592688522918 4 2 2 -6.79857485338707 LTS-037 chr7 4845313 4946175 100863 * c(MMD2, RADIL, PAPOLB) 0.404 1 NA 1.23719963256274 167 0.246912914702316 4 4 0 -5.7680557059943 LTS-037 chr7 4946176 5937949 991774 * c(RBAK-RBAKDN, RNF216-IT1, MMD2, SLC29A4, WIPI2, RBAKDN, ZNF815P, RNF216P1, RNF216, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TNRC18) 0.415131252085335 28 0.150345857888161 1.27986708868203 1124 0.44806634731481 4 2 2 -6.74716340863234 LTS-037 chr7 5937950 5938048 99 * character(0) NA 0 NA 0.856 1 NA NA NA NA NA LTS-037 chr7 5938049 5958596 20548 * CCZ1 NA 0 NA 0.680263561623979 47 0.166876324498342 2 NA NA -5.76781829016116 LTS-037 chr7 5958597 5959443 847 * CCZ1 NA 0 NA 2.274 1 NA NA NA NA NA LTS-037 chr7 5959444 6369980 410537 * c(ANKRD61, RSPH10B, EIF2AK1, CCZ1, PMS2, AIMP2, USP42, FAM220A, CYTH3) 0.390329887734562 19 0.0625215284559474 1.28149493163302 621 0.447178836312888 5 3 2 -6.82809428038207 LTS-037 chr7 6369981 6844708 474728 * c(KDELR2, DAGLB, CCZ1B, GRID2IP, PMS2CL, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, FAM220A) 0.399876926115021 30 0.0529785903406533 1.47723702734178 836 0.479451269431051 5 3 2 -6.74757118130046 LTS-037 chr7 6844709 6865811 21103 * CCZ1B 0.392 1 NA 2.71920443447063 39 1.11528358139828 9 9 0 -5.76441098361747 LTS-037 chr7 6865812 6865838 27 * CCZ1B 0.27 1 NA 0.684 1 NA NA NA NA NA LTS-037 chr7 6865839 7283569 417731 * c(LOC100131257, CCZ1B, C1GALT1) 0.265683478160125 4 0.0482104760399646 1.51895633899994 66 0.508523261014683 4 3 1 -6.82521332610046 LTS-037 chr7 7283570 7470894 187325 * c(COL28A1, C1GALT1) 0.496 1 NA 1.6531308263629 85 0.366016139378736 5 5 0 -5.76529011323717 LTS-037 chr7 7470895 7516914 46020 * COL28A1 0.441971777490411 6 0.0467931618935929 1.53958915437089 75 0.336223620888306 4 2 2 -6.74752333327776 LTS-037 chr7 7516915 7528959 12045 * COL28A1 NA 0 NA 1.155 1 NA NA NA NA NA LTS-037 chr7 7528960 28676909 21147950 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, MIR3146, ISPD-AS1, LRRC72, LOC100506178, HOTAIRM1, HOXA10-HOXA9, KLHL7-AS1, RNU6-16P, MACC1-AS1, HOXA10-AS, ARL4A, GPNMB, AGR2, IGF2BP3, NUPL2, HIBADH, GLCCI1, CBX3, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, EVX1, VWDE, PRPS1L1, TWISTNB, SP8, HOXA11-AS, JAZF1, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, TSPAN13, C7orf71, NA NA NA NA NA NA NA NA NA LTS-037 BZW2, SNX10, TRA2A, NXPH1, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, MIR148A, MEOX2, LOC441204, MIR196B, NDUFA4, NPY, MPP6, CYCS, MIOS, TOMM7, TMEM106B, CDCA7L, KLHL7, STK31, ANKMY2, RPA3, NPVF, SP4, SNORD93, TWIST1, UMAD1, ISPD, FAM126A, SCIN, DNAH11, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PHF14, HDAC9, RAPGEF5, KIAA0087) 0.453894009524006 219 0.0531304534517929 1.27572807942156 8035 0.414020295545878 4 2 2 -6.86284681161978 LTS-037 NA NA NA NA LTS-037 chr7 28676910 28725635 48726 * CREB5 NA 0 NA 1.566 1 NA NA NA NA NA LTS-037 chr7 28725636 34989515 6263880 * c(DPY19L1P1, LOC100130673, MIR550B2, MIR550B1, LOC100506497, INMT-FAM188B, MIR550A3, NOD1, PPP1R17, INMT, CHN2, FKBP9, ADCYAP1R1, CRHR2, BMPER, DKFZP586I1420, MTURN, PRR15, CCDC129, ZNRF2, AVL9, DPY19L1, LSM5, KBTBD2, GARS, GHRHR, BBS9, AQP1, NPSR1, LOC401320, LINC00997, NPSR1-AS1, ZNRF2P1, RP9P, DPY19L2P3, NT5C3A, PDE1C, CPVL, FKBP14, RP9, NEUROD6, WIPF3, LOC646762, MIR550A1, MIR550A2, GGCT, FAM188B, PLEKHA8, NA NA NA NA NA NA NA NA NA LTS-037 CREB5, SCRN1, TRIL) 0.452663431119874 95 0.0587323288331731 1.37894616244072 3765 0.652165340479447 4 2 2 -6.79867439623925 LTS-037 NA NA NA NA LTS-037 chr7 34989516 34994303 4788 * DPY19L1 NA 0 NA 1.032 1 NA NA NA NA NA LTS-037 chr7 34994304 36763688 1769385 * c(AOAH-IT1, DPY19L1, KIAA0895, AOAH, LOC401324, ANLN, DPY19L2P1, TBX20, HERPUD2, EEPD1, SEPT7) 0.457401136783091 20 0.112658438140294 1.21458543800677 892 0.280465617562237 4 2 2 -6.83695628822342 LTS-037 chr7 36763689 36894047 130359 * c(AOAH, ELMO1) 0.309 1 NA 1.29401366594623 11 0.320164588354746 4 4 0 -5.76459873952677 LTS-037 chr7 36894048 37990676 1096629 * c(MIR1200, GPR141, NME8, EPDR1, SFRP4, ELMO1) 0.306125293405038 5 0.256078113082708 1.17730770896761 375 0.365686298804986 4 3 1 -6.79734746276289 LTS-037 chr7 37990677 38357077 366401 * c(TARP, EPDR1, STARD3NL) 0.331148415183979 4 0.217542907645059 1.4671116126068 146 1.4769018153318 6 4 2 -6.74297520704976 LTS-037 chr7 38357078 38402517 45440 * c(TRG-AS1, TARP) 0.428 1 NA 1.2919196202952 35 0.326402790295373 4 4 0 -5.7644870921998 LTS-037 chr7 38402518 57532512 19129995 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NA NA NA NA NA NA NA NA NA LTS-037 NPC1L1, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, OGDH, CHCHD2, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, SNORA15, UPP1, C7orf25, SUGCT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.439779922112627 231 0.0784638125838101 1.29489008054648 8951 0.54983047559268 4 2 2 -6.74270391321074 LTS-037 NA NA NA NA LTS-037 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 2.10671456455622 17 0.993077158456008 7 NA NA -5.76441054575436 LTS-037 chr7 62758725 63033440 274716 * ZNF733P 0.424 1 NA 0.864618441082668 15 0.362087492715438 2 2 0 -5.79333268522847 LTS-037 chr7 63033441 64639874 1606434 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.434548390893576 28 0.102307400674654 1.25284889266958 613 0.350234411276093 4 2 2 -6.75132092476313 LTS-037 chr7 64639875 64643339 3465 * character(0) NA 0 NA 0.908 1 NA NA NA NA NA LTS-037 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) 0.483502962326333 5 0.0153362316101447 0.790031992050326 98 0.28510604550752 2 1 1 -9.92515957401589 LTS-037 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 1.176 1 NA NA NA NA NA LTS-037 chr7 65159973 74251390 9091418 * c(MIR4284, MIR3914-1, MIR3914-2, MIR4650-1, MIR4650-2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, ABHD11-AS1, ELN, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, LINC00174, GTF2I, GUSB, LIMK1, GTF2IRD2P1, ASL, LOC441242, TYW1B, SPDYE7P, STAG3L3, GS1-124K5.11, MLXIPL, SBDS, PMS2P4, LOC541473, TMEM248, TYW1, NSUN5, RFC2, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, SNORA22, NA NA NA NA NA NA NA NA NA LTS-037 STX1A, MIR590, GTF2IRD1P1, EIF4H, CLIP2, LAT2, FZD9, ABHD11, CALN1, GTF2IRD2, DNAJC30, TPST1, FKBP6, BAZ1B, BCL7B, GTF2IRD1, POM121) 0.442978097361286 103 0.0631717311659552 1.29523989652403 3668 0.521383559698924 4 2 2 -6.74384361372063 LTS-037 NA NA NA NA LTS-037 chr7 74251391 74456284 204894 * c(NA, STAG3L2, PMS2P5, RCC1L, GTF2IRD2) NA 0 NA 0.01 1 NA NA NA NA NA LTS-037 chr7 74456285 75048064 591780 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, GTF2IRD2B, STAG3L1, NCF1C, GATSL2, RCC1L) 0.477434709535237 3 0.0147309198626562 0.967936877705594 196 0.486857588560003 2 1 1 -9.6441044713294 LTS-037 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.241 1 NA NA NA NA NA LTS-037 chr7 75048588 75864461 815874 * c(POM121C, MIR4651, CCL26, SRRM3, HIP1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A, TMEM120A) 0.459428253493641 6 0.0298172209749109 1.30747677436505 682 0.311439648145411 4 2 2 -7.0703917487226 LTS-037 chr7 75864462 76063520 199059 * c(SSC4D, SRRM3, HSPB1, YWHAG, ZP3) 0.328002916656514 7 0.0444350783781934 1.82700307930418 326 0.532387219588275 6 4 2 -6.85220126240871 LTS-037 chr7 76063521 76069582 6062 * ZP3 NA 0 NA 0.257 1 NA NA NA NA NA LTS-037 chr7 76069583 82435051 6365469 * c(PMS2P9, LOC100133091, MIR548M, APTR, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3C, FGL2, DTX2, RSBN1L, POMZP3, PCLO, GNAI1, HGF, GNAT3, RPL13AP17, DTX2P1-UPK3BP1-PMS2P11, GSAP, PHTF2, CCDC146, PTPN12, FDPSP2, ZP3, CACNA2D1, UPK3B, TMEM60, CD36, MAGI2) 0.404135040211212 30 0.093291343181689 1.3002937853998 2028 0.37861452323275 4 2 2 -6.80724274633803 LTS-037 chr7 82435052 86508604 4073553 * c(SEMA3A, KIAA1324L, SEMA3D, PCLO, GRM3, SEMA3E) 0.45213410635364 33 0.0483237385983454 1.42495539214276 1111 0.384058518129084 4 2 2 -6.90166282140351 LTS-037 chr7 86508605 100320992 13812388 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, ZKSCAN5, NA NA NA NA NA NA NA NA NA LTS-037 CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, CROT, SAMD9, ZCWPW1, C7orf43, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, MIR653, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.447167341854373 203 0.0771376515410945 1.26890366522719 12090 0.360168953377951 4 2 2 -6.82327693106629 LTS-037 NA NA NA NA LTS-037 chr7 100320993 100321091 99 * EPO NA 0 NA 1.364 1 NA NA NA NA NA LTS-037 chr7 100321092 100344353 23262 * c(EPO, ZAN) NA 0 NA 0.775117907861222 38 0.235748678776378 2 NA NA -5.76486943430402 LTS-037 chr7 100344354 100344359 6 * ZAN 0.423 1 NA 2.699 1 NA NA NA NA NA LTS-037 chr7 100344360 100488658 144299 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.461830231117471 34 0.0327237668948136 1.34494771770807 663 2.94669569809661 4 2 2 -7.07431293162415 LTS-037 chr7 100488659 100547278 58620 * ACHE 0.3 1 NA 1.39312979862386 53 0.219491601513539 4 4 0 -5.76687196492374 LTS-037 chr7 100547279 100549543 2265 * character(0) 0.366416186121386 5 0.11107519975224 1.16902248288454 9 0.274521604088114 3 2 1 -6.73517852525093 LTS-037 chr7 100549544 100549573 30 * character(0) 0.29 1 NA 2.208 1 NA NA NA NA NA LTS-037 chr7 100549574 100550184 611 * character(0) 0.368785001702145 22 0.0335654687534778 2.14036806239254 34 0.410338885424311 11 7 4 -6.733739503311 LTS-037 chr7 100550185 100550203 19 * character(0) 0.071 1 NA 1.95774745057506 3 0.410594690662215 6 6 0 -5.76441022301233 LTS-037 chr7 100550204 100550772 569 * character(0) 0.249467455179112 12 0.089298783459086 2.00814801422795 21 0.451202984623698 17 13 4 -6.73644485059237 LTS-037 chr7 100550773 100550777 5 * character(0) NA 0 NA 1.171 1 NA NA NA NA NA LTS-037 chr7 100550778 100551108 331 * character(0) 0.262651463633992 10 0.0840729841665363 0.739400432245738 40 0.420839088561814 12 9 3 -6.73588254316334 LTS-037 chr7 100551109 100551133 25 * character(0) 0.188 1 NA 1.357 1 NA NA NA NA NA LTS-037 chr7 100551134 100551220 87 * character(0) 0.384 1 NA 1.38434512550727 3 0.46512399780417 4 4 0 -5.7644107735594 LTS-037 chr7 100551221 100552739 1519 * character(0) 0.335688960676344 65 0.0853364157095542 2.11389058751216 98 0.60101059151831 15 10 5 -6.73557015941565 LTS-037 chr7 100552740 100552788 49 * character(0) 0.301 1 NA 1.32 1 NA NA NA NA NA LTS-037 chr7 100552789 100552837 49 * character(0) 0.471 1 NA 1.57753305011088 3 0.527285817496861 5 5 0 -5.7644101561902 LTS-037 chr7 100552838 100610069 57232 * character(0) 0.431811087333476 20 0.0610543114560178 1.28635946978038 69 0.45212721334852 4 2 2 -6.73654290432843 LTS-037 chr7 100610070 100610772 703 * character(0) 0.247 1 NA 1.51365250454738 13 0.291834296151526 5 5 0 -5.76442550930496 LTS-037 chr7 100610773 100635205 24433 * MUC12 0.320375383254359 22 0.0600425534525992 1.51150996990489 77 0.479143947850173 10 7 3 -6.77774930417701 LTS-037 chr7 100635206 100635679 474 * MUC12 0.398 1 NA 1.28558123088481 7 0.156299620692347 4 4 0 -5.76441589097993 LTS-037 chr7 100635680 100775316 139637 * c(MUC12, MUC17, SERPINE1, TRIM56) 0.477765047230883 10 0.0285043856274785 1.44589715701766 414 0.227887189469803 4 2 2 -7.80074954024509 LTS-037 chr7 100775317 129357097 28581781 * c(RPL19P12, LOC100130705, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, SMKR1, LOC100289561, SPDYE2B, MIR4285, MIR3666, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, AASS, LRRC17, FAM3C, COG5, ZNHIT1, SH2B2, CFTR, DUS4L, ZNF277, AP1S1, COL26A1, ASZ1, ASB15, CUX1, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, CCDC71L, ZNF800, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, NA NA NA NA NA NA NA NA NA LTS-037 CDHR3, TFEC, LAMB4, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, CLDN15, POLR2J2, POT1, HYALP1, TES, HBP1, DNAJC2, SND1, SND1-IT1, GPR22, SLC26A4-AS1, LSMEM1, TPI1P2, GPR37, GRM8, HILPDA, MDFIC, FSCN3, ST7-OT4, TSPAN33, MOGAT3, FAM71F2, IFRD1, DPY19L2P2, IMPDH1, IRF5, KCND2, NAT16, SLC26A5, LHFPL3, KCP, RNF148, ARF5, FEZF1, LAMB1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, LOC407835, DNAJB9, MET, EIF3IP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LMOD2, NDUFA5, NRCAM, NRF1, ORC5, SERPINE1, PNPLA8, PAX4, TAS2R16, FIS1, WNT16, LSM8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, ING3, LRRN3, ALKBH4, POLR2J3, PPP1R3A, RBM28, PRKAR2B, METTL2B, KMT2E, BCAP29, ANKRD7, RELN, PSMC2, STRIP2, PTPRZ1, RINT1, OPN1SW, LRRC4, TMEM168, LHFPL3-AS1, CCDC136, IFT22, SLC13A1, SMO, SPAM1, SRPK2, SYPL1, MIR592, MIR593, LHFPL3-AS2, SPDYE6, TMEM229A, VGF, WNT2, GCC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PRKRIP1, ST7, CBLL1, CPED1, ORAI2, CALU, CAPZA2, ARMC10, IMMP2L, CTTNBP2, FAM71F1, CAV1, CAV2, WASL, PLOD3, ATP6V1F, MYL10, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, FOXP2, PMPCB, DOCK4) 0.452838920206677 234 0.0640038578447334 1.27514794201878 14529 0.359394089643488 4 2 2 -6.89252674124113 LTS-037 NA NA NA NA LTS-037 chr7 129357098 129856268 499171 * c(RNA5SP244, SSMEM1, KLHDC10, MIR182, MIR183, MIR96, NRF1, ZC3HC1, UBE2H, TMEM209) 0.411302421897945 8 0.0614299833724775 1.56883251992098 540 0.399406163037351 5 3 2 -6.73924285198179 LTS-037 chr7 129856269 138946363 9090095 * c(LOC100130880, MIR4468, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, TMEM213, AKR1B1, NUP205, UBN2, SLC13A4, COPG2, FLJ40288, WDR91, MESTIT1, AGBL3, STRA8, LOC349160, LINC-PINT, FAM180A, MIR29A, MIR29B1, MEST, MKLN1, AKR1B15, MIR335, CNOT4, ATP6V0A4, CPA4, PODXL, CHCHD3, TMEM140, ZC3HAV1, AKR1B10, MIR490, PTN, KIAA1549, EXOC4, NA, C7orf73, CREB3L2, BPGM, AKR1D1, LUZP6, C7orf49, TTC26, CALD1, NA NA NA NA NA NA NA NA NA LTS-037 SLC35B4, TRIM24, PLXNA4, DGKI, ZC3HAV1L, CPA5, CEP41) 0.452012420631471 97 0.0596723639747645 1.2983493777472 5224 0.322707838578089 4 2 2 -6.78167155505127 LTS-037 NA NA NA NA LTS-037 chr7 138946364 138961756 15393 * UBN2 0 1 NA 1.21112241651023 41 0.425510283329924 4 4 0 -5.76475244260572 LTS-037 chr7 138961757 139316360 354604 * c(LOC100129148, C7orf55-LUC7L2, CLEC2L, FMC1, UBN2, HIPK2, KLRG2, LUC7L2) 0.328613128776767 9 0.221881725250188 1.33934402474913 636 0.340882997386487 4 3 1 -6.75949168233748 LTS-037 chr7 139316361 139316502 142 * HIPK2 0.434 1 NA 1.38909571736349 5 0.421133351802015 4 4 0 -5.76441158718707 LTS-037 chr7 139316503 140401726 1085224 * c(JHDM1D-AS1, NDUFB2-AS1, MKRN1, DENND2A, HIPK2, RAB19, NDUFB2, PARP12, TBXAS1, KDM7A, SLC37A3, ADCK2) 0.450246499808695 25 0.0446618032178132 1.22721862490575 977 0.296699988337151 4 2 2 -6.82462453811471 LTS-037 chr7 140401727 140405147 3421 * NDUFB2 0 1 NA 1.42849488955702 17 1.08147163828358 4 4 0 -5.76442226506026 LTS-037 chr7 140405148 141137556 732409 * c(TMEM178B, NDUFB2, MRPS33, BRAF) 0.262836694069146 9 0.234051810503572 1.28592378578021 187 0.445139363265509 4 3 1 -6.73832759812101 LTS-037 chr7 141137557 141176988 39432 * TMEM178B 0.458 1 NA 1.27270641484192 17 0.177788415225051 4 4 0 -5.76519213900201 LTS-037 chr7 141176989 141957504 780516 * c(MOXD2P, TMEM178B, OR9A4, PRSS37, PRSS58, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, MGAM, MGAM2) 0.429287600616844 18 0.154154239032745 1.28243123374251 1350 0.362267842457827 4 2 2 -6.73649665013759 LTS-037 chr7 141957505 142008672 51168 * c(PRSS58, NA) 0.201 1 NA 1.2868984918127 24 0.564252485819622 4 4 0 -5.76445361878214 LTS-037 chr7 142008673 142231703 223031 * character(0) 0.287691873095347 33 0.109855664603399 1.39008900557835 231 0.564186993901921 4 3 1 -6.73569074035659 LTS-037 chr7 142231704 142239679 7976 * character(0) 0.458 1 NA 1.45265352834091 11 0.31268956432277 5 5 0 -5.76486952461333 LTS-037 chr7 142239680 142983089 743410 * c(MTRNR2L6, OR9A2, C7orf34, TMEM139, PRSS3P2, EPHB6, TAS2R39, TAS2R40, OR6V1, GSTK1, KEL, PIP, TRPV6, TRPV5, PRSS1, OR6W1P) 0.336401934712102 33 0.120475604219781 1.301266604307 879 0.300512967714852 4 3 1 -6.85136566912517 LTS-037 chr7 142983090 142983093 4 * TMEM139 NA 0 NA 1.617 1 NA NA NA NA NA LTS-037 chr7 142983094 143093538 110445 * c(CLCN1, TMEM139, EPHA1, ZYX, CASP2, FAM131B) 0.335660222876211 12 0.0432269381499336 1.83613041259579 536 0.43872986600369 6 4 2 -6.78152796628381 LTS-037 chr7 143093539 143305591 212053 * c(EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15) NA 0 NA 1.80786665752535 128 0.54888467801878 6 NA NA -5.76517312017029 LTS-037 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.198483891710466 39 0.350321595070885 0 NA NA -5.76612782194176 LTS-037 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.889 1 NA NA NA NA NA LTS-037 chr7 143400289 143556264 155976 * c(LOC154761, TCAF2, CTAGE6, TCAF1) NA 0 NA 1.88313516858644 87 0.676259203875247 6 NA NA -5.76441073822662 LTS-037 chr7 143556265 143573043 16779 * TCAF1 NA 0 NA 1.252 1 NA NA NA NA NA LTS-037 chr7 143573044 143657801 84758 * c(OR2F2, OR2F1, TCAF1) 0.436 1 NA 1.34230585053567 45 0.217013887280808 4 4 0 -5.7648825871319 LTS-037 chr7 143657802 143840031 182230 * c(OR2A14, OR6B1, OR2F1, OR2A12, OR2A25, OR2A5, OR2A2) 0.469358168728635 10 0.0343873361702951 1.28938751748702 149 0.243149341192314 4 2 2 -7.23881481661214 LTS-037 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.627 1 NA NA NA NA NA LTS-037 chr7 143883365 144072694 189330 * c(OR2A7, ARHGEF35, ARHGEF34P, ARHGEF5) 0.42 1 NA 0.687730776638832 154 0.420003525031589 2 2 0 -5.76821085624583 LTS-037 chr7 144072695 144074199 1505 * ARHGEF5 NA 0 NA 1.007 1 NA NA NA NA NA LTS-037 chr7 144074200 158738849 14664650 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, CNTNAP2, NA NA NA NA NA NA NA NA NA LTS-037 GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, XRCC2, MIR671, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.445043433927917 312 0.0675313868514117 1.27821465295049 9536 1.05944323887352 4 2 2 -6.74891368617424 LTS-037 NA NA NA NA LTS-037 chr7 158738850 159025951 287102 * c(LINC00689, WDR60, VIPR2) NA 0 NA 1.34570540103442 143 0.214782974167688 4 NA NA -5.76646237381284 LTS-037 chr8 182757 182934 178 * ZNF596 0.43 1 NA 1.09086885946723 3 0.366294963110333 3 3 0 -5.76441286970472 LTS-037 chr8 182935 1949639 1766705 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, MIR596, DLGAP2, ARHGEF10, KBTBD11) 0.456906055088783 37 0.0333066109103032 1.32533233192617 1013 0.329756499297377 4 2 2 -6.9522575048885 LTS-037 chr8 1949640 1951439 1800 * KBTBD11 NA 0 NA 0.732269682944598 40 0.385446391230766 2 NA NA -5.76441157861364 LTS-037 chr8 1951440 6913031 4961592 * c(LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, ANGPT2, XKR5, DEFA8P, DEFA9P, DEFA10P, AGPAT5, CSMD1, DEFA11P, DEFA1B, MCPH1, MYOM2, KBTBD11) 0.449804004423144 44 0.0775856207117415 1.32607292620914 1262 0.363827546293659 4 2 2 -6.75252280995917 LTS-037 chr8 6913032 7213977 300946 * c(FAM66B, DEFA5, USP17L1, USP17L4) 0.244 1 NA 1.27975416079221 13 0.2389071002798 4 4 0 -5.76668198592628 LTS-037 chr8 7213978 7305470 91493 * c(ZNF705G, DEFB4B) NA 0 NA 1.8424961356019 11 1.33852913847456 6 NA NA -5.76442710443745 LTS-037 chr8 7305471 7308043 2573 * character(0) NA 0 NA 0.789 1 NA NA NA NA NA LTS-037 chr8 7308044 7752350 444307 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.312174833398629 6 0.0766802886449097 1.05152294911113 103 1.06068478252552 4 3 1 -6.8334436966539 LTS-037 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.521 1 NA NA NA NA NA LTS-037 chr8 8175295 8561452 386158 * c(CLDN23, SGK223) 0.30057697545109 15 0.108281027665889 1.82267268340236 161 1.24225264637366 7 5 2 -6.73784243575684 LTS-037 chr8 8561453 8641145 79693 * CLDN23 0.381 1 NA 1.73998886999257 11 0.758087785753794 6 6 0 -5.76495296014319 LTS-037 chr8 8641146 8888467 247322 * c(ERI1, MFHAS1) 0.406056608812198 2 0.00848528137423854 1.55216175645156 190 0.296654996860579 5 3 2 -6.73781434326284 LTS-037 chr8 8888468 43056978 34168511 * c(NAT2, RBPMS-AS1, LOC100128993, LOC100130964, FAM66D, FAM66A, MIR1322, MIR4287, MIR3148, MIR4288, MIR3926-2, MIR3622A, MIR3926-1, MIR3622B, LOC100506990, LOC100507156, SMIM18, MIR4469, MIR548O2, MIR4660, LZTS1-AS1, NRG1-IT3, LINC00681, SORBS3, NPM2, DLC1, DCTN6, PNMA2, ADAM28, AP3M2, RBPMS, ERLIN2, LZTS1, PROSC, CHRNA2, CHRNB3, SMIM19, CLU, GOT1L1, VPS37A, NKX2-6, SGCZ, GPAT4, UNC5D, LETM2, HGSNAT, ADRA1A, NA NA NA NA NA NA NA NA NA LTS-037 CTSB, ADRB3, LOC157273, PEBP4, CDCA2, ESCO2, FBXO16, LINC00599, TDH, C8orf48, NKX6-3, KCNU1, ADAM3A, IDO2, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, PRSS55, C8orf74, HTRA4, ADAM32, LGI3, DMTN, EPHX2, EXTL3, PTK2B, FDFT1, FGFR1, FGL1, XPO7, TRIM35, RHOBTB2, DDHD2, KIF13B, PSD3, FNTA, LEPROTL1, SLC39A14, DEFB109P1, DEFB130, ADAM2, NEIL2, LOC254896, ADAM5, ADGRA2, GATA4, FGF20, GFRA2, DKK4, LSM1, ADAMDEC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 GNRH1, ANK1, XKR6, LOC286059, MICU3, LOC286114, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, CNOT7, PURG, NRG1, LOC340357, IKBKB, IDO1, USP17L2, FAM90A25P, LOC389641, NUGGC, C8orf86, LOC392196, USP17L7, LOXL2, LPL, MIR124-1, MIR320A, ASAH1, MSR1, MSRA, NEFM, NEFL, NKX3-1, MIR383, PCM1, GOLGA7, ZDHHC2, SLC25A37, SCARA3, PDGFRL, SARAF, ATP6V1B2, PLAT, PNOC, C8orf58, POLB, KCTD9, WHSC1L1, PINX1, PIWIL2, ELP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 THAP1, PPP2CB, INTS10, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, CSGALNACT1, HR, PBK, ZNF395, BIN3, TEX15, C8orf4, MTUS1, KIAA1456, CCAR2, PLEKHA2, DEFB135, DEFB136, DEFB134, LINC00589, MBOAT4, MIR486-1, SH2D4A, BLK, SFRP1, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, LOC649352, FAM86B2, SLC7A2, SLC18A1, SLC20A2, MTMR9, POLR3D, BNIP3L, STAR, STC1, TACC1, MIR597, MIR598, LOC728024, ZNF705D, FAM90A2P, LOC729732, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 VDAC3, WRN, DUSP26, HMBOX1, PPP1R3B, ZMAT4, FZD3, RNF122, NUDT18, TUSC3, UBXN8, KAT6A, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, REEP4, STMN4, RNF170, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, TM2D2, POMK, GINS4, HOOK3, PLPP5, MAK16, FUT10, FAM86B1, TNKS, ADAM18, ADAM9, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, CHRNA6, NAT1, ERI1, DOK2, ASH2L, MTMR7, LONRF1, CHMP7, RP1L1, BAG4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ENTPD4, PHYHIP) 0.447185886947913 473 0.0723697737382802 1.29525914810416 21476 0.4082794447507 4 2 2 -6.77292538705461 LTS-037 NA NA NA NA LTS-037 chr8 43056979 43212050 155072 * c(HGSNAT, POTEA) NA 0 NA 1.32464320223008 65 0.378280549378978 4 NA NA -5.7644484077925 LTS-037 chr8 47752736 47759712 6977 * LINC00293 0.49 1 NA 1.33412241262406 23 0.260753605320707 4 4 0 -5.76442362376676 LTS-037 chr8 47759713 52721958 4962246 * c(LOC100287846, CEBPD, PXDNL, SPIDR, MCM4, C8orf22, LINC00293, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.430717015760717 15 0.119762662120108 1.2890414411341 1385 0.375675448119319 4 2 2 -6.74246584048202 LTS-037 chr8 52721959 52731018 9060 * c(PCMTD1, PXDNL) 0.302 1 NA 1.25605824393034 22 0.280288738725403 4 4 0 -5.76455331682626 LTS-037 chr8 52731019 52733076 2058 * PCMTD1 0.286342870492572 15 0.100366945801513 1.25405699442724 53 0.33978573351815 4 3 1 -6.73393990732693 LTS-037 chr8 52733077 52746153 13077 * PCMTD1 0.471 1 NA 1.27342211451663 27 0.225487720842427 4 4 0 -5.76456580780577 LTS-037 chr8 52746154 101076249 48330096 * c(MIR875, C8orf88, STAU2-AS1, TCF24, MIR124-2HG, LOC100130298, C8orf89, LRRC69, MSC-AS1, SBF1P1, ZFHX4-AS1, REXO1L2P, LOC100288748, MIR2052, MIR3150A, LOC100500773, MIR3150B, LINC00967, RRS1-AS1, LINC01592, LINC00968, LINC01606, C8orf44-SGK3, MIR378D2, MIR4661, MIR4470, C8orf37-AS1, MIR5708, MIR5681A, MIR5681B, FSBP, LINC00534, LOC101241902, YTHDF3-AS1, CDH17, RIDA, CPQ, LYPLA1, NCOA2, ARFGEF1, POP1, COPS5, WWP1, NA NA NA NA NA NA NA NA NA LTS-037 STMN2, XKR4, SLC26A7, PCMTD1, OSR2, C8orf34, COX6C, FAM92A1, NDUFAF6, TMEM68, ADHFE1, UBXN2B, DCAF4L2, RALYL, CRH, RDH10, C8orf37, VPS13B, SLC7A13, MCMDC2, CLVS1, SBSPON, CYP7A1, DECR1, CNBD1, TMEM64, E2F5, SDR16C5, ERICH5, EYA1, FABP4, FABP5, RRS1, SULF1, HEY1, TRAM1, LY96, SGK3, ATP6V0D2, YTHDF3, C8orf46, REXO1L1P, RAD54B, KIAA1429, LINC00588, RGS22, PTTG3P, GEM, SNORA72, SNORD54, STAU2, BHLHE22, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NPBWR1, TRIQK, DPY19L4, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, C8orf34-AS1, LACTB2-AS1, MRPS28, MRPL15, HNF4G, SLC10A5, IL7, IMPA1, CA13, KCNS2, FAM150A, XKR9, C8orf87, RBM12B, LOC392232, GDF6, LOC401463, C8orf59, LYN, MIR124-2, MATN2, MMP16, MOS, MIR2052HG, FLJ46284, ASPH, MYBL1, NBN, OPRK1, MTERF3, PI15, ZC2HC1A, LACTB2, RMDN1, PDE7A, ATP6V1H, OTUD6B, PENK, PLAG1, PMP2, GDAP1, PDP1, CNGB3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ESRP1, IMPAD1, TMEM70, ARMC1, UBE2W, LINC00251, LAPTM4B, RBM12B-AS1, TMEM55A, CHD7, INTS8, PKIA, PAG1, C8orf44, JPH1, CPA6, PEX2, RAB2A, RP1, RPL7, RPL30, ZNF704, LINC01298, RPS20, SDC2, SDCBP, PRDM14, SNX16, SNHG6, SNORD87, NECAB1, LINC00535, SOX17, UG0898H09, FABP9, FABP12, ZBTB10, STK3, TCEA1, TCEB1, MIR599, TERF1, TPD52, TTPA, OSGIN2, UQCRB, CA1, CA2, CA3, CA8, CHCHD7, CALB1, PLEKHF2, ZFAND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZFHX4, NIPAL2, CSPP1, VCPIP1, PREX2, SLCO5A1, CRISPLD1, NSMAF, TRIM55, LRRCC1, TSPYL5, DNAJC5B, PSKH2, RGS20, RUNX1T1, RIPK2, GGH, CPNE3, TRPA1, FAM110B, TMEM67, CCNE2, MTDH, MSC, CHMP4C, KCNB2, CYP7B1, TP53INP1, MTFR1, TGS1, ST18, TOX, PTDSS1, RB1CC1) 0.45759394251212 361 0.0487793786120506 1.28532677035242 18844 0.338329218785535 4 2 2 -6.9690093312894 LTS-037 NA NA NA NA LTS-037 chr8 101076250 101078375 2126 * RGS22 NA 0 NA 1.207 1 NA NA NA NA NA LTS-037 chr8 101078376 104081078 3002703 * c(MIR4471, MIR5680, ANKRD46, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.426475080711793 39 0.0790822186142035 1.20571828023547 1691 0.317113591909375 4 2 2 -6.87335645633169 LTS-037 chr8 104081079 104081126 48 * ATP6V1C1 NA 0 NA 1.295 1 NA NA NA NA NA LTS-037 chr8 104081127 120592408 16511282 * c(MIR2053, MIR3151, BAALC-AS1, MIR3610, LINC00536, COLEC10, MAL2, CSMD3, CTHRC1, ABRA, BAALC-AS2, TMEM74, SLC30A8, DPYS, EXT1, ZFPM2, DCAF13, KCNV1, ANGPT1, LRP12, RSPO2, EIF3E, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, ATP6V1C1, OXR1, SAMD12-AS1, SYBU, ENY2, RAD21, RAD21-AS1, TRHR, TRPS1, BAALC, SLC25A32, DCSTAMP, FZD6, UTP23, NUDCD1, EIF3H, MED30, EBAG9, PKHD1L1, EMC2, RIMS2) 0.44795812197965 83 0.0790978648914429 1.35447032017833 4510 1.78949397309437 4 2 2 -6.7485159529191 LTS-037 chr8 120592409 129021179 8428771 * c(LINC00861, FAM83A-AS1, MIR1205, MIR1206, MIR1204, ZHX1-C8orf76, MIR4663, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, MYC, NDUFB9, ENPP2, POU5F1B, TRMT12, WDYHV1, PVT1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, CASC8, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.450888219653777 77 0.0888121871120788 1.26594245433394 3655 0.343675073846268 4 2 2 -6.80898709445509 LTS-037 chr8 129021180 129162497 141318 * c(MIR1206, MIR1207, MIR1208, PVT1) 0.308 1 NA 1.55440354378518 15 0.366586220612364 5 5 0 -5.76494769640309 LTS-037 chr8 129162498 130763856 1601359 * c(GSDMC, LINC00977) 0.297004555903758 5 0.0557377789295555 1.16851410628667 41 0.266927134480463 4 3 1 -6.95481369979335 LTS-037 chr8 130763857 130763927 71 * GSDMC NA 0 NA 0.944 1 NA NA NA NA NA LTS-037 chr8 130763928 134251017 3487090 * c(ASAP1-IT2, MIR5194, HHLA1, NDRG1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, ASAP1, PHF20L1, FAM49B, GSDMC, SLA, TG, OC90, WISP1, HPYR1) 0.343785050034378 51 0.105197006592766 0.973373729171223 1921 0.233984330630559 3 2 1 -6.86183175356011 LTS-037 chr8 134251018 134251117 100 * NDRG1 NA 0 NA 1.423 1 NA NA NA NA NA LTS-037 chr8 134251118 144063817 9812700 * c(LOC100133669, LOC100288181, MIR4472-1, NDRG1, KHDRBS3, PTP4A3, LYPD2, CYP11B1, CYP11B2, COL22A1, TSNARE1, DENND3, ARC, AGO2, GML, GPR20, LINC01591, MROH5, MIR30B, MIR30D, FAM135B, KCNK9, THEM6, CHRAC1, LY6K, SLURP1, SLC45A4, PTK2, ADGRB1, ZFAT, ZFAT-AS1, LINC00051, ST3GAL1, LYNX1, LINC01300, PSCA, TRAPPC9, LY6D, JRK) 0.346018347318411 131 0.0755428986478063 1.03950584921418 3514 0.285689074726987 3 2 1 -6.76224820835135 LTS-037 chr8 144063818 144099678 35861 * c(CDC42P3, LOC100133669) 0.386 1 NA 1.13437282037675 11 0.387149794829293 3 3 0 -5.7657853366001 LTS-037 chr8 144099679 144466415 366737 * c(LOC100133669, RHPN1, TOP1MT, GLI4, C8orf31, ZFP41, GPIHBP1, LY6E, LY6H, RHPN1-AS1, ZNF696) 0.363782849565666 30 0.0644594232163096 0.979029968722971 541 0.248537469472457 3 2 1 -6.74351530539427 LTS-037 chr8 144466416 144510203 43788 * character(0) NA 0 NA 0.503 1 NA NA NA NA NA LTS-037 chr8 144510204 144519900 9697 * c(ZC3H3, MAFA) 0.09 1 NA 0.712455011511668 59 0.294522775194252 2 2 0 -5.76452580419258 LTS-037 chr8 144519901 146280765 1760865 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, MFSD3, CYC1, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, GPT, COMMD5, GRINA, CPSF1, HSF1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, SCX, PYCRL, C8orf33, MIR661, TSTA3, MROH1, ZNF7, NA NA NA NA NA NA NA NA NA LTS-037 ZNF16, SLC52A2, GSDMD, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.357451698685227 176 0.0788051301563613 0.998016767371882 5486 0.259914471578611 3 2 1 -6.74798950110457 LTS-037 NA NA NA NA LTS-037 chr8 146280766 146280905 140 * C8orf33 NA 0 NA 0.740004504126786 3 0.0282901631902917 2 NA NA -5.764411477955 LTS-037 chr9 14732 14764 33 * WASH1 0.222 1 NA 0.171 1 NA NA NA NA NA LTS-037 chr9 14765 43861081 43846317 * c(CDKN2B-AS1, SNORD121A, LINC00583, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, GNE, WASH1, FAM95C, MIR3152, LOC100506422, EBLN3P, MIR4667, MIR4473, MIR4540, MIR4665, MIR4475, MIR4474, MIR4476, SNORD121B, RCL1, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, DMRT2, RRAGA, CCL27, PSIP1, INSL6, PTENP1, DCTN3, UHRF2, CLTA, PLIN2, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, C9orf66, LINC00032, NA NA NA NA NA NA NA NA NA LTS-037 LINGO2, TTC39B, FAM201A, TRMT10B, SAXO1, FREM1, KIAA2026, LINC00961, ATP8B5P, KCNV2, GLIS3, DMRT1, ELAVL2, C9orf72, CCDC171, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, FOXD4, KDM4C, MLANA, KANK1, PHF24, DDX58, ANKRD18A, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, ZNF658, SPAG8, FBXO10, B4GALT1, RANBP6, DNAI1, SIT1, SPINK4, GLDC, LOC286297, TUSC1, LURAP1L, CD274, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, ZDHHC21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IGFBPL1, IL11RA, AQP3, AQP7, INSL4, JAK2, ENHO, LOC389705, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, VLDLR-AS1, LINC01235, HACD4, LINC01242, TMEM215, TOMM5, FAM74A1, ZNF658B, PLPP6, MIR101-2, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, AQP7P3, ANKRD18B, MTAP, NDUFB6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NFIB, NFX1, ACO1, NPR2, PAX5, AK3, EXOSC3, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, UBE2R2, SPATA6L, SMU1, MIR31HG, CDC37L1, DENND4C, UBAP2, PLGRKT, CBWD1, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, RIC1, GBA2, PTPRD, DMRT3, RFX3, RLN1, RLN2, RMRP, RPS6, CCL19, CCL21, DMRTA1, NA, NA, LOC642929, LINC01189, POLR1E, SH3GL2, SHB, HRCT1, LRRC19, SLC1A1, NOL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NA, FGF7P3, FAM138C, SMARCA2, SNAPC3, SCARNA8, MSMP, TEK, TESK1, TLN1, TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, TYRP1, VCP, VLDLR, CA9, DCAF10, MOB3B, CAAP1, CNTNAP3, ERMP1, IFT74, FAM214B, PDCD1LG2, DOCK8, ZCCHC7, RECK, HINT2, C9orf24, PIGO, GLIS3-AS1, ARHGEF39, MPDZ, CCIN, TPD52L3, IL33, TMEM261, SLC25A51, ADAMTSL1, LINC00950, CER1, PLAA, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5, PUM3) 0.439403201932731 353 0.0732418767178358 0.742932567247754 18229 0.218419647749784 2 1 1 -6.73408815479644 LTS-037 NA NA NA NA LTS-037 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.642541604992057 6 0.358096076493446 2 NA NA -5.79512397098648 LTS-037 chr9 65602571 69002317 3399747 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.339989660384535 30 0.0773490446782873 0.834859049897302 77 0.282811245559957 3 2 1 -7.71879715595084 LTS-037 chr9 69002318 71152024 2149707 * c(LOC100133920, TMEM252, FOXD4L3, LOC440896, PGM5, PGM5-AS1, PGM5P2, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4) 0.477 1 NA 0.723010869946474 97 0.168306024714882 2 2 0 -5.79699121504147 LTS-037 chr9 71152025 117074810 45922786 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, LOC100132781, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, SEC61B, SLC35D2, NA NA NA NA NA NA NA NA NA LTS-037 AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF883, ZNF169, ECM2, ABCA1, LPAR1, S1PR3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 AAED1, ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, OR13D1, NA, MIR4290HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, NAA35, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RORB, MIR455, SLC28A3, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.442299735007178 586 0.0700846396411614 0.738241209625398 26104 0.557578929899222 2 1 1 -6.74039658606048 LTS-037 NA NA NA NA LTS-037 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.345 1 NA NA NA NA NA LTS-037 chr9 117085363 117089956 4594 * ORM1 NA 0 NA 0.240834050685674 41 0.0891079093694556 0 NA NA -5.8050933477457 LTS-037 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.602 1 NA NA NA NA NA LTS-037 chr9 117092173 121976471 4884299 * c(SNORA70C, ASTN2-AS1, LOC100505478, BRINP1, TMEM268, TRIM32, ASTN2, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, TLR4, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.449142329289526 31 0.05283414910669 0.778872155217481 1598 0.185738974030187 2 1 1 -6.95410604061757 LTS-037 chr9 121976472 122000943 24472 * BRINP1 NA 0 NA 0.607 1 NA NA NA NA NA LTS-037 chr9 122000944 131940635 9939692 * c(LOC100129034, LOC100288842, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3911, LOC100506100, MIR3960, MIR4478, MIR219B, MIR4672, RABEPK, CDK9, ZER1, ZBTB6, NEK6, SLC27A4, CNTRL, RPL35, SLC25A25, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DAB2IP, OR1Q1, TTLL11, TTC16, BRINP1, OLFML2A, DNM1, MEGF9, ENDOG, ENG, AK1, NAIF1, STOM, DOLK, ZBTB43, ANGPTL2, NUP188, FPGS, RABGAP1, NR5A1, PSMD5-AS1, PHYHD1, NA NA NA NA NA NA NA NA NA LTS-037 MORN5, OR1L4, CIZ1, GAPVD1, PHF19, FBXW2, OR1J4, LHX6, NR6A1, OR1L3, OR1L1, OR1J2, SNORA65, GGTA1P, TRUB2, ST6GALNAC4, GLE1, TOR2A, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, GSN, PKN3, SLC2A8, ST6GALNAC6, HSPA5, ADGRD2, OR1J1, OR1B1, SWI5, PTGES2-AS1, IER5L, OR1L6, OR5C1, OR1K1, LCN2, FAM102A, LMX1B, WDR38, ZBTB34, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, NDUFA8, ODF2, PDCL, PBX3, COQ4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CERCAM, SPOUT1, RAB14, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, CDK5RAP2, LRRC8A, SH3GLB2, PSMB7, PSMD5, DOLPP1, PTGS1, ZBTB26, DENND1A, RPL12, NRON, SET, FAM129B, SPTAN1, STXBP1, SNORD90, MIR601, TRAF1, C5, ZNF79, C9orf16, MAPKAP1, PTGES2, MIR600HG, URM1, ARPC5L, GARNL3, ZDHHC12, MIGA2, DPM2, KYAT1, MVB12B, WDR34, LRSAM1, MRRF, RBM18, LHX2, RALGPS1) 0.448513271564125 199 0.0502271759064057 0.728455376559829 11823 0.238639168088153 2 1 1 -6.80638385364376 LTS-037 NA NA NA NA LTS-037 chr9 131940636 132084143 143508 * C9orf106 NA 0 NA 1.037 1 NA NA NA NA NA LTS-037 chr9 132084144 132404510 320367 * c(LINC00963, ASB6, NTMT1, C9orf50, C9orf106) 0.342548408086072 3 0.0304357246231026 0.994719310290514 149 0.214399783973863 3 2 1 -6.93392036115813 LTS-037 chr9 132404511 135821181 3416671 * c(LOC100272217, LAMC3, POMT1, USP20, SPACA9, AK8, TOR1A, FNBP1, SETX, EXOSC2, NCS1, ABL1, SNORD62A, TOR1B, FAM78A, RAPGEF1, QRFP, CFAP77, ASS1, PRRX2, C9orf78, BARHL1, GPR107, PRDM12, DDX31, TSC1, TTF1, NUP214, AIF1L, UCK1, NTNG2, PRRC2B, PLPP7, FIBCD1, FUBP3, GTF3C4, MED27, PTGES) 0.443519984123872 87 0.0650130885594716 0.725190015797942 4584 0.376513873889703 2 1 1 -6.74834267186071 LTS-037 chr9 135821182 135861950 40769 * GFI1B NA 0 NA 1.172 1 NA NA NA NA NA LTS-037 chr9 135861951 136268012 406062 * c(CEL, CELP, STKLD1, GBGT1, SNORD36C, SNORD36B, SNORD36A, SNORD24, ABO, OBP2B, RALGDS, RPL7A, SURF1, SURF2, SURF4, MED22, SURF6, GFI1B, GTF3C5) 0.357674098252106 39 0.0555299095101228 1.01280411751764 934 0.281543611598874 3 2 1 -6.73504736734357 LTS-037 chr9 136268013 139996619 3728607 * c(LOC100128593, LINC01502, CCDC183-AS1, RNU6ATAC, MAN1B1-AS1, MIR4292, MIR3689A, MIR3689B, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR4674, MIR3689C, MIR3689D2, MIR3689E, MIR4479, LOC101448202, UBAC1, OLFM1, AGPAT2, SDCCAG3, WDR5, ADAMTS13, CACFD1, SLC2A6, MAN1B1, COL5A1, NACC2, C9orf116, LCN8, FAM69B, DBH-AS1, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, DBH, STKLD1, QSOX2, SARDH, ABCA2, FCN1, FCN2, NA NA NA NA NA NA NA NA NA LTS-037 PMPCA, FUT7, GPSM1, DKFZP434A062, LINC00094, LCN12, C9orf142, PHPT1, OBP2A, GLT6D1, LCN15, C9orf172, TMEM8C, LCN9, LCN1, LOC401557, LCNL1, C9orf139, SOHLH1, MIR126, LCN10, NOTCH1, PAEP, MRPS2, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, REXO4, PTGDS, KCNT1, RXRA, CARD9, FAM163B, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, VAV2, BRD3, LHX3, CCDC183, SNHG7, TMEM141, EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ENTPD2, ADAMTSL2, PPP1R26, SEC16A) 0.452719091348559 113 0.045593089086395 0.736882727565101 6408 0.716535164068536 2 1 1 -6.80890560361586 LTS-037 NA NA NA NA LTS-037 chr9 139996620 139996641 22 * MAN1B1 0.457 1 NA 0.753 1 NA NA NA NA NA LTS-037 chr9 139996642 139997791 1150 * MAN1B1 0.245672960559672 9 0.0591032524015764 1.0434134386399 31 0.372887783287052 13 10 3 -6.74319133668935 LTS-037 chr9 139997792 140051238 53447 * c(MAN1B1, GRIN1, DPP7) 0.497 1 NA 0.686597845664541 161 0.16735765203794 2 2 0 -5.77145676128448 LTS-037 chr9 140051239 141070283 1019045 * c(STPG3-AS1, MIR3621, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, GRIN1, ANAPC2, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.434898433159107 37 0.0609413024339187 0.722812470038324 2164 0.190456725441584 2 1 1 -6.74576024268315 LTS-037 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.810074105337041 6 0.491972255315277 2 NA NA -5.76443773347281 LTS-037 chr10 94832 95353 522 * TUBB8 0.405 1 NA 1.00651926136995 7 0.231318580564307 3 3 0 -5.76441288395775 LTS-037 chr10 95354 5415678 5320325 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, AKR1C8P, IDI1, AKR1C6P, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, AKR1C3, IDI2) 0.376129529007143 82 0.0544530951039118 0.997919411323838 2133 0.361745727160657 3 2 1 -6.80595431094807 LTS-037 chr10 5415679 5931582 515904 * c(NET1, UCN3, GDI2, CALML5, ANKRD16, FAM208B, ASB13, TUBAL3, CALML3, FBXO18) 0.271047596325876 18 0.0424756754688604 1.25671352073453 615 0.282796128351388 4 3 1 -6.7840361863002 LTS-037 chr10 5931583 5931641 59 * c(ANKRD16, FBXO18) 0.372 1 NA 0.173 1 NA NA NA NA NA LTS-037 chr10 5931642 17757955 11826314 * c(ST8SIA6-AS1, PPIAP30, MIR1265, MIR3155A, LINC00707, MIR4480, MIR3155B, OPTN, RPP38, CELF2, NUDT5, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ST8SIA6, IL2RA, IL15RA, ITIH2, C1QL3, LOC399715, GATA3-AS1, ACBD7, PRKCQ-AS1, CELF2-AS2, CDNF, ATP5C1, HSPA14, PFKFB3, PHYH, ANKRD16, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, PRKCQ, CAMK1D, SFMBT2, NA NA NA NA NA NA NA NA NA LTS-037 RSU1, DCLRE1C, MEIG1, VIM, SUV39H2, ECHDC3, FAM188A, STAM, CUBN, ITIH5, FAM107B, CCDC3, TAF3, FBXO18, RBM17, ITGA8, PRPF18, CDC123, HACD1, PTER, NMT2, USP6NL) 0.340855328990291 117 0.0681803672737227 0.985618633582371 6066 0.308153959168729 3 2 1 -6.91425322348082 LTS-037 NA NA NA NA LTS-037 chr10 17757956 17813275 55320 * c(TMEM236, STAM) NA 0 NA 0.421 1 NA NA NA NA NA LTS-037 chr10 17813276 17891770 78495 * c(MRC1, NA, TMEM236) NA 0 NA 0.252798975129329 39 0.146386198216704 0 NA NA -6.08447610971266 LTS-037 chr10 17891771 17898210 6440 * c(MRC1, NA, TMEM236) NA 0 NA 0.706 1 NA NA NA NA NA LTS-037 chr10 17898211 28971876 11073666 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, NA, GPR158, ARHGAP21, NA NA NA NA NA NA NA NA NA LTS-037 DNAJC1, LINC00264, BMI1, TMEM236, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.343174545485439 125 0.0915593880953073 1.02427472158732 5198 0.365440602881858 3 2 1 -6.75468552681639 LTS-037 NA NA NA NA LTS-037 chr10 28971877 29136117 164241 * LINC00837 NA 0 NA 0.965 1 NA NA NA NA NA LTS-037 chr10 29136118 38740353 9604236 * c(MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, SEPT7P9, ITGB1, KIF5B, PTCHD3P1, LINC00999, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ANKRD30A, ARHGAP12) 0.334276474080436 89 0.0689232115539394 0.972108729346174 3252 0.538294229043562 3 2 1 -6.87977272429333 LTS-037 chr10 38740354 38740384 31 * LINC00999 NA 0 NA 0.412 2 0 0 NA NA -Inf LTS-037 chr10 42379946 46934817 4554872 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, NA, NA, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.36444624050808 54 0.0631618886583981 0.978235873291641 1815 0.284293858917716 3 2 1 -6.81969834868113 LTS-037 chr10 46934818 46952743 17926 * c(PTPN20, GLUD1P7, FAM35BP, NA, NA) NA 0 NA 4.411 1 NA NA NA NA NA LTS-037 chr10 46952744 47701299 748556 * c(PTPN20, GLUD1P7, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.3892804266507 32 0.0707186326225274 1.2306645817437 291 0.51402711438367 5 3 2 -6.87927785940413 LTS-037 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 0.693 1 NA NA NA NA NA LTS-037 chr10 47755982 48033122 277141 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) 0.291230203061437 2 0.0339411254969543 0.610376414561374 43 0.411847549717362 4 3 1 -7.30029785348867 LTS-037 chr10 48033123 48054939 21817 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.999 1 NA NA NA NA NA LTS-037 chr10 48054940 63168488 15113549 * c(TIMM23, MIR4294, MTRNR2L5, MIR3924, FAM170B-AS1, PRKG1-AS1, MRLN, NA, CHAT, ZWINT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, PTPN20, GDF2, GDF10, C10orf53, LINC01553, ANK3, A1CF, NA, FAM21A, NA, AGAP6, GLUD1P7, MBL2, MSMB, LRRC18, NA, OGDHL, CISD1, PRKG1, MAPK8, ASAH2, WDFY4, ARHGAP22, RBP3, DRGX, PCDH15, NA, AGAP7P, ASAH2B, NA NA NA NA NA NA NA NA NA LTS-037 SLC18A3, MIR605, TFAM, NA, NA, PARGP1, FAM133CP, FRMPD2B, UBE2D1, BICC1, CCDC6, NCOA4, PHYHIPL, PARG, CDK1, RHOBTB1) 0.356857127184167 138 0.0815979625598414 1.04975330309956 5380 0.317875265840828 3 2 1 -6.77104765146471 LTS-037 NA NA NA NA LTS-037 chr10 63168489 63168570 82 * TMEM26 NA 0 NA 0.964 1 NA NA NA NA NA LTS-037 chr10 63168571 72972926 9804356 * c(MIR1296, MIR548AV, COL13A1, ADAMTS14, DNA2, EGR2, EIF4EBP2, C10orf107, TMEM26, UNC5B, STOX1, C10orf35, TYSND1, RTKN2, TBATA, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, TSPAN15, HERC4, KIF1BP, PALD1, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, H2AFY2, PRF1, SRGN, RUFY2, CCAR1, DNAJC12, SAR1A, PBLD, NPFFR1, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, NA NA NA NA NA NA NA NA NA LTS-037 MYPN, AIFM2, ADO, JMJD1C-AS1, SGPL1, DDX21, VPS26A) 0.357782605084358 107 0.0774821155011639 0.993034716087588 5511 0.290062902301968 3 2 1 -6.81894715244911 LTS-037 NA NA NA NA LTS-037 chr10 72972927 73039568 66642 * c(UNC5B, UNC5B-AS1) NA 0 NA 1.444 1 NA NA NA NA NA LTS-037 chr10 73039569 73060277 20709 * UNC5B 0.319358627123137 4 0.0448358115795845 1.34781996340668 108 0.314818926209588 10 7 3 -6.83401606974166 LTS-037 chr10 73060278 73061708 1431 * UNC5B 0.278 1 NA 1.36743572434919 29 0.282809789164538 4 4 0 -5.76442684366756 LTS-037 chr10 73061709 73157132 95424 * c(UNC5B, SLC29A3, CDH23) 0.267510006579182 5 0.0229063310025853 1.38476967013408 90 0.399502090388422 8 6 2 -6.8489334429902 LTS-037 chr10 73157133 73199457 42325 * CDH23 NA 0 NA 1.653 1 NA NA NA NA NA LTS-037 chr10 73199458 73611018 411561 * c(C10orf105, PSAP, CDH23, C10orf54) 0.201864291388864 24 0.0296636946891094 1.83557110791339 740 0.417518567870574 6 5 1 -6.75096438002894 LTS-037 chr10 73611019 75855657 2244639 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, ANAPC16, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, NUDT13, GLUD1P3, ANXA7, FAM149B1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, AGAP5, BMS1P4, VCL, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.269996772972236 25 0.134511920165711 0.990880597121655 2854 0.223345178677296 3 2 1 -7.0290601011683 LTS-037 chr10 75855658 76803567 947910 * c(ADK, KAT6B, AP3M1, DUPD1, VCL) 0.325 1 NA 0.929432910431255 449 0.193051032247799 3 3 0 -5.91727213244764 LTS-037 chr10 76803568 76980569 177002 * c(SAMD8, DUPD1, DUSP13, VDAC2) 0.376509777142445 5 0.0368442668538811 0.949696573559198 176 0.261047488091652 3 2 1 -6.857691435611 LTS-037 chr10 76980570 76980663 94 * VDAC2 NA 0 NA 0.8 1 NA NA NA NA NA LTS-037 chr10 76980664 77312292 331629 * c(ZNF503-AS2, COMTD1, ZNF503-AS1, VDAC2, ZNF503) 0.417777080773046 4 0.0600694043031337 0.707069982940977 194 0.214243628814443 2 1 1 -6.80078322772962 LTS-037 chr10 77312293 82005764 4693472 * c(DLG5-AS1, LINC00856, BMS1P21, PPIF, POLR3A, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, ZMIZ1-AS1, ANXA11, KCNMA1, LINC00595, LINC00857, ZMIZ1, RPS24, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, C10orf11, MBL1P, DLG5) 0.348866385376059 63 0.0855845985110881 1.02915385881838 1894 0.277156954648113 3 2 1 -6.7436210583148 LTS-037 chr10 82005765 82009627 3863 * character(0) NA 0 NA 0.302372775455413 41 0.365495717501854 1 NA NA -5.76735953965692 LTS-037 chr10 82009628 82012431 2804 * character(0) NA 0 NA 1.483 1 NA NA NA NA NA LTS-037 chr10 82012432 104498998 22486567 * c(TLX1NB, C10orf131, PLCE1-AS1, KLLN, HECTD2-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, FAS-AS1, MIR3157, MIR3158-1, MIR3158-2, SLIT1-AS1, RPARP-AS1, GRID1-AS1, MARK2P9, ARHGAP19-SLIT1, MIR4679-1, MIR4679-2, MIR4678, MIR4685, MIR5692C2, LINC00502, ACTR1A, NPM3, RPP30, SORBS1, ERLIN1, LBX1, NRG3, MGEA5, ADIRF, LDB3, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ANKRD22, SFXN2, NUDT9P1, AGAP11, ABCC2, COX15, NA NA NA NA NA NA NA NA NA LTS-037 CPN1, ACSM6, LIPJ, CFL1P1, DYDC1, HECTD2, FGFBP3, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP26A1, NKX2-3, SLC35G1, LINC00858, DNTT, FGF8, CPEB3, WAPL, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, IFIT5, DPCD, SEC31B, LRIT1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, ANKRD1, GHITM, R3HCC1L, POLL, GLUD1, GOT1, BLOC1S2, FLJ37201, GRID1, BLNK, HELLS, KCNIP2, HHEX, TLX1, HPS1, HTR7, FFAR4, LIPM, CYP26C1, LRIT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SH2D4B, C10orf99, SLC16A12, CC2D2B, LIPA, LBX1-AS1, GOLGA7B, ARL3, MIR107, C10orf62, MAT1A, LINC00863, IFIT1B, MIR346, NDUFB8, NFKB2, PAX2, EXOSC1, CUTC, PLCE1, PDE6C, SUFU, PGAM1, PITX3, PANK1, CCSER2, EXOC6, FAM35A, CCNJ, MARCH5, PPP1R3C, CRTAC1, CEP55, CWF19L1, RNLS, PI4K2A, HIF1AN, SLF2, PSD, C10orf2, TM9SF3, ENTPD7, PTEN, MIR146B, STAMBPL1, SEMA4G, ALDH18A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ACTA2, RBP4, RGR, AVPI1, HPSE2, SCD, MMS19, SFRP5, FAM25A, NOC3L, LIPK, LIPN, LINC00865, FBXW4, BMPR1A, SLIT1, SNCG, SNORA12, MIR608, TLL2, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, ENTPD1-AS1, WNT8B, CUEDC2, FBXL15, C10orf76, HPS6, MMRN2, MFSD13A, C10orf95, PDZD7, UBTD1, TNKS2, TRIM8, TSPAN14, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, LOXL4, ZDHHC16, FAM213A, DYDC2, PCGF5, LZTS2, LCOR, MRPL43, PYROXD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ATAD1, ARHGAP19, LIPF, GBF1, LDB1, BTRC, CH25H, OLMALINC, PKD2L1, BTAF1, PAPSS2, PDLIM1, LGI1, NOLC1, CDHR1, OPALIN, OPN4, ENTPD1, MINPP1, KIF20B, ZNF518A) 0.353784152772371 341 0.0675720873828268 1.01718882213777 17868 0.272977551901248 3 2 1 -6.76092462599664 LTS-037 NA NA NA NA LTS-037 chr10 104498999 104503810 4812 * WBP1L NA 0 NA 0.613 1 NA NA NA NA NA LTS-037 chr10 104503811 105074113 570303 * c(BORCS7-ASMT, BORCS7, CYP17A1, NT5C2, CNNM2, WBP1L, AS3MT, RPEL1, PCGF6, INA) 0.438597779541784 15 0.0384158945279288 0.696002235789496 686 0.177333234922871 2 1 1 -6.7804132354204 LTS-037 chr10 105074114 105086358 12245 * PCGF6 NA 0 NA 1.005 1 NA NA NA NA NA LTS-037 chr10 105086359 117825095 12738737 * c(MIR936, MIR1307, MIR2110, MIR4295, SH3PXD2A-AS1, ADD3-AS1, MIR4680, MIR4483, MIR4482, SMNDC1, SORCS1, GSTO2, SFR1, CALHM3, ADD3, COL17A1, TRUB1, VTI1A, ADRA2A, ADRB1, CFAP58, DUSP5, PDCD11, SORCS3, CALHM1, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, VWA2, NHLRC2, GUCY2GP, ABLIM1, MXI1, NRAP, CALHM2, ACSL5, CCDC186, TDRD1, GPAM, FAM160B1, ZDHHC6, RPL13AP6, TAF5, MIR609, TCF7L2, TECTB, XPNPEP1, NA NA NA NA NA NA NA NA NA LTS-037 PLEKHS1, OBFC1, CFAP43, SHOC2, CASP7, PCGF6, AFAP1L2, USMG5, ITPRIP, SMC3, NEURL1, BBIP1, GSTO1, SH3PXD2A, SLK, DCLRE1A) 0.344430578343084 164 0.0684143356523999 0.998331600236125 6514 0.290156548199063 3 2 1 -6.84478501297966 LTS-037 NA NA NA NA LTS-037 chr10 117825096 119308575 1483480 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, GFRA1, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.352100354207334 19 0.03306948205332 1.08274447082412 1281 0.25911274475701 3 2 1 -6.80387234904231 LTS-037 chr10 119308576 121652470 2343895 * c(MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, EMX2, RAB11FIP2, INPP5F, CASC2, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.390637411157308 16 0.0485997256508031 0.956655780598776 1513 0.217127092092591 3 2 1 -7.11185187474074 LTS-037 chr10 121652471 121657874 5404 * SEC23IP NA 0 NA 1.188 1 NA NA NA NA NA LTS-037 chr10 121657875 134192263 12534389 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4682, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, ATE1, SEC23IP, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, DMBT1, DOCK1, PLPP4, FAM24B, FGFR2, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, WDR11-AS1, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, NA NA NA NA NA NA NA NA NA LTS-037 METTL10, FLJ37035, FOXI2, LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, NSMCE4A, WDR11, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, BUB3, FANK1, FAM53B) 0.349460691749694 218 0.0769909540495106 1.02057533069951 6227 0.297595637377621 3 2 1 -6.74996626223779 LTS-037 NA NA NA NA LTS-037 chr10 134192264 134598709 406446 * c(C10orf91, PWWP2B, INPP5A, LRRC27, NKX6-2) 0.286 1 NA 1.11230489394766 187 0.421268332325297 3 3 0 -5.77281085217684 LTS-037 chr10 134598710 134693137 94428 * c(CFAP46, NKX6-2) 0.389131933425016 5 0.0518960499460219 1.05859230138401 180 0.284348571888792 5 3 2 -6.90906955422128 LTS-037 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.67 1 NA NA NA NA NA LTS-037 chr10 134694406 134756359 61954 * CFAP46 0.391535520144793 10 0.0559901777100234 0.524366786750743 175 0.114869128646159 2 1 1 -7.41916932250211 LTS-037 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.639 1 NA NA NA NA NA LTS-037 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.354117671691576 64 0.0591992867824905 1.0237466686807 1416 0.304504976571849 3 2 1 -6.73952816567549 LTS-037 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.464 1 NA NA NA NA NA LTS-037 chr11 193025 193146 122 * SCGB1C1 0.05 1 NA 0.761190572722699 3 0.0443959457608462 2 2 0 -5.76443249238226 LTS-037 chr11 193147 1011932 818786 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.349702697285701 86 0.0503809455219196 0.993260206787009 2894 0.543271179967647 3 2 1 -6.76120270159251 LTS-037 chr11 1011933 1016834 4902 * c(AP2A2, MUC6) 0.314 1 NA 1.09127770426652 51 0.168433609426129 3 3 0 -5.76477285747407 LTS-037 chr11 1016835 1253401 236567 * c(MUC2, MUC6, MUC5B) 0.311549140602493 75 0.091181879423135 1.07343767059472 736 0.253375656135031 4 3 1 -6.88279020545893 LTS-037 chr11 1253402 1253856 455 * MUC5B 0.297 1 NA 1.01163625977272 9 0.296732951396444 3 3 0 -5.76441098945118 LTS-037 chr11 1253857 1260219 6363 * MUC5B 0.213092274303813 14 0.119893359208997 0.831366184662165 60 0.264756916012162 5 4 1 -6.77126044438928 LTS-037 chr11 1260220 1262907 2688 * MUC5B 0.439 1 NA 0.972738799850165 46 0.167619434670408 3 3 0 -5.76458899371683 LTS-037 chr11 1262908 3187772 1924865 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, CTSD, DUSP8, TOLLIP-AS1, H19, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MUC5B, MOB2, CARS, SYT8, BRSK2, CD81) 0.366685754119012 126 0.069068595303096 1.0198541897976 2512 0.307853589782781 3 2 1 -6.73913533429539 LTS-037 chr11 3187773 3242907 55135 * c(OSBPL5, MRGPRG-AS1, MRGPRG) 0.333 1 NA 1.0594658840571 27 0.256369697219507 3 3 0 -5.76485029182607 LTS-037 chr11 3242908 4156542 913635 * c(MIR4687, OR7E12P, MRGPRE, ART5, PGAP2, MRGPRG-AS1, RHOG, ART1, NUP98, CHRNA10, RRM1, TSSC2, STIM1, TRPC2, ZNF195) 0.310670089052387 21 0.14659922691929 1.0229979330498 878 0.30638514578167 3 2 1 -6.80103484220283 LTS-037 chr11 4156543 4159453 2911 * RRM1 NA 0 NA 1.183 1 NA NA NA NA NA LTS-037 chr11 4159454 5776429 1616976 * c(LOC100506082, TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM34, TRIM68, MMP26, RRM1, TRIM21, NA NA NA NA NA NA NA NA NA LTS-037 OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, TRIM5) 0.376120081862255 125 0.0540702136115625 1.09819984798856 2051 0.263641381717034 3 2 1 -6.84359225395588 LTS-037 NA NA NA NA LTS-037 chr11 5776430 19864396 14087967 * c(LOC100126784, MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, SPTY2D1-AS1, SAA2-SAA4, MIR4486, MIR4694, USH1C, MIR5691, NAV2-AS5, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, HPS5, PRKCDBP, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, SPTY2D1, TMEM86A, OR10A5, OR2AG1, DNHD1, LDHAL6A, C11orf42, OR56B4, EIF4G2, NA NA NA NA NA NA NA NA NA LTS-037 RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, MRGPRX1, SERGEF, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, IGSF22, OR10A4, OLFML1, LOC283299, GTF2H1, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OTOG, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, KCNC1, KCNJ11, GVINP1, INSC, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LDHA, LDHC, NAV2-AS4, LMO1, ARNTL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, LOC494141, RNF141, PDE3B, CYB5R2, PIK3C2A, ZDHHC13, USP47, UEVLD, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, SAA1, SAA2, SAA3P, SAA4, MRPL17, LOC644656, RASSF10, STK33, SMPD1, ST5, SNORA23, SNORA3B, ABCC8, TAF10, SNORD97, TEAD1, TPH1, TSG101, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CALCA, RIC3, CALCB, E2F8, CSRP3, SBF2, FAM160A2, FAR1, BTBD10, PTPN5, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, NAV2, MICAL2, CTR9, TRIM66) 0.353151092471828 362 0.0689522758065244 1.01865051676679 13227 0.444072707738293 3 2 1 -6.74340842742647 LTS-037 NA NA NA NA LTS-037 chr11 19864397 31828115 11963719 * c(CCDC179, DCDC5, LINC00678, PRMT3, HTATIP2, DBX1, DNAJC24, ARL14EP, MUC15, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, SVIP, GAS2, ELP4, LUZP2, DCDC1, KCNA4, FIBIN, NELL1, BDNF-AS, PAX6, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5) 0.348810083440953 72 0.0661788948741256 1.08123850748801 3786 0.281573870043575 3 2 1 -6.96838298826908 LTS-037 chr11 31828116 31837960 9845 * PAX6 NA 0 NA 0.675 1 NA NA NA NA NA LTS-037 chr11 31837961 34460542 2622582 * c(C11orf91, HIPK3, EIF3M, CSTF3, KIAA1549L, ABTB2, FBXO3, LINC00294, CSTF3-AS1, LMO2, CAPRIN1, DKFZp686K1684, CCDC73, PAX6, WT1-AS, NAT10, TCP11L1, RCN1, WT1, PRRG4, QSER1, CAT, DEPDC7, CD59) 0.350692930561005 70 0.068649361123092 1.0165422055699 2349 0.305007487645403 3 2 1 -6.74696330857733 LTS-037 chr11 34460543 34937811 477269 * c(ELF5, EHF, APIP, PDHX, CAT) 0.283841435973621 21 0.0543981792412384 1.33506668619555 333 0.409883611797054 4 3 1 -6.73381295103546 LTS-037 chr11 34937812 34937813 2 * c(APIP, PDHX) 0.25 1 NA 0.308 1 NA NA NA NA NA LTS-037 chr11 34937814 47447816 12510003 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, FJX1, PAMR1, HARBI1, COMMD9, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, APIP, HSD17B12, PHF21A, ACP2, TRIM44, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, NA NA NA NA NA NA NA NA NA LTS-037 SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, C11orf49, ZNF408, PRR5L, PDHX, ARFGAP2, ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, CD44, ATG13, CKAP5) 0.343759554064114 124 0.0673057559083153 1.03054491980534 5985 0.263569407325614 3 2 1 -6.76918423253165 LTS-037 NA NA NA NA LTS-037 chr11 47447817 47640429 192613 * c(CELF1, C1QTNF4, PTPMT1, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.293950986317058 10 0.0940520541449728 0.91330328861581 389 0.220908411152047 4 3 1 -7.04060489631362 LTS-037 chr11 47640430 47648562 8133 * MTCH2 0.403 1 NA 1.14016340113563 17 0.268692873545462 3 3 0 -5.76512675791605 LTS-037 chr11 47648563 48286424 637862 * c(OR4X2, OR4B1, NUP160, FNBP4, MTCH2, OR4X1, PTPRJ, AGBL2) 0.374236828852287 12 0.0580428264040415 0.966831166487195 773 0.233329577385793 3 2 1 -6.79454683009227 LTS-037 chr11 48286425 48327745 41321 * character(0) NA 0 NA 1.989 1 NA NA NA NA NA LTS-037 chr11 48327746 48388657 60912 * c(OR4C3, OR4S1, OR4C45) 0.338884768775698 103 0.0596931681135833 1.52772072083473 205 0.624552770529052 6 4 2 -6.75105252412232 LTS-037 chr11 48388658 48388675 18 * character(0) NA 0 NA 1.073 1 NA NA NA NA NA LTS-037 chr11 48388676 51459077 3070402 * c(FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.400898471470489 13 0.0544928835626668 1.05919019449744 424 0.405841412866553 3 2 1 -7.05930378694661 LTS-037 chr11 51459078 51527703 68626 * OR4C46 NA 0 NA 1.03111820532589 41 0.178239018065562 3 NA NA -5.76441792918251 LTS-037 chr11 55035776 55111157 75382 * c(TRIM51HP, TRIM48, OR4A16) 0.214 1 NA 1.03211138287306 11 0.449994545421487 3 3 0 -5.76441273961255 LTS-037 chr11 55111158 55340582 229425 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.256332705935326 11 0.111125236475871 1.12565114287831 92 0.394796569114061 4 3 1 -6.78725054585688 LTS-037 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.381 1 NA NA NA NA NA LTS-037 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.393521984316567 67 0.0475899063446099 1 NA NA -6.03786226961665 LTS-037 chr11 55419422 55432532 13111 * character(0) NA 0 NA 1.007 1 NA NA NA NA NA LTS-037 chr11 55432533 57080674 1648142 * c(OR5I1, OR8I2, APLNR, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51, TNKS1BP1) 0.336826209799232 46 0.0915602175071231 1.12371870924397 1244 0.25338601427151 3 2 1 -6.89016094439413 LTS-037 chr11 57080675 60285528 3204854 * c(MIR3162, TMX2-CTNND1, GLYAT, PRG3, CLP1, CNTF, CTNND1, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A2, DTX4, MS4A6E, ZDHHC5, TIMM10, GIF, SELENOH, LOC283194, SLC43A3, RTN4RL2, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, MIR130A, OR5B3, OSBP, P2RX3, MS4A13, TMX2, MS4A4A, NA NA NA NA NA NA NA NA NA LTS-037 MS4A12, MRPL16, PRG2, MS4A7, FAM111A, MS4A6A, MS4A5, BTBD18, SSRP1, STX3, TCN1, SERPING1, ZFP91, OR10W1, OR10V2P, MS4A14, SLC43A1, TNKS1BP1, GLYATL1, UBE2L6, MS4A1, MS4A3, LPXN) 0.347223695183081 79 0.0562614307329696 1.03581690758616 3824 0.248293875951477 3 2 1 -6.76650849554086 LTS-037 NA NA NA NA LTS-037 chr11 60285529 60291413 5885 * MS4A13 0.356 1 NA 0.917859306447502 5 0.116531969862352 3 3 0 -5.76778112496745 LTS-037 chr11 60291414 62012311 1720898 * c(MIR1908, MIR4488, SCGB1D2, SCGB1D1, PTGDR2, RPLP0P2, DDB1, MS4A15, VWCE, CYB561A3, PPP1R32, FEN1, ZP1, FTH1, TKFC, DKFZP434K028, PRPF19, LINC00301, MS4A10, INCENP, LRRC10B, FADS1, FADS3, SCGB2A1, MS4A13, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, RAB3IL1, PGA3, PGA4, MIR611, BEST1, MYRF, TMEM258, DAGLA, TMEM109, CCDC86, CPSF7, MS4A8, SYT7, CD5, CD6, FADS2) 0.362596627837809 39 0.0490427393545753 1.04098472531017 3280 0.246764437534002 3 2 1 -6.73684396679928 LTS-037 chr11 62012312 62037562 25251 * character(0) NA 0 NA 1.453 1 NA NA NA NA NA LTS-037 chr11 62037563 62470088 432526 * c(HNRNPUL2-BSCL2, EEF1G, LRRN4CL, GANAB, EML3, B3GAT3, BSCL2, SCGB1D4, SCGB2A2, UBXN1, ROM1, TUT1, SNORA57, SCGB1A1, METTL12, AHNAK, LBHD1, UQCC3, ASRGL1, INTS5, MTA2) 0.414578819518107 13 0.0533965570771404 1.53787193225687 1394 0.407099454845185 5 3 2 -6.75305688926858 LTS-037 chr11 62470089 62472723 2635 * c(HNRNPUL2-BSCL2, BSCL2) NA 0 NA 0.918 1 NA NA NA NA NA LTS-037 chr11 62472724 73472134 10999411 * c(NAALADL1, LOC100129216, TMEM262, LOC100130987, LOC100133315, MIR1237, MIR548K, MIR3165, MIR3664, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, MIR4692, IL18BP, DPP3, SHANK2-AS1, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, CFL1, STARD10, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, NA NA NA NA NA NA NA NA NA LTS-037 SLC22A12, MRGPRD, MRGPRF, ARAP1, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, DHCR7, MARK2, CTTN, ESRRA, FAU, MRPL21, TPCN2, ORAOV1, SHANK2-AS3, LRTOMT, TIGD3, ALDH3B1, HNRNPUL2, ALDH3B2, FGF3, FGF4, FKBP2, SHANK2, KDM2A, ATG2A, FAM168A, FOLR1, FOLR2, FOLR3, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, DEFB108B, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ANAPC15, ATL3, PPP1R14B, MYEOV, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, ALG1L9P, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, ANKRD13D, TBX10, IGHMBP2, INPPL1, TMEM179B, TBC1D10C, MALAT1, KRTAP5-9, KRTAP5-10, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, FLJ42102, PHOX2A, ARL2, LRP5, LTBP3, MIR139, MIR192, MIR194-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MEN1, MAP3K11, SLC22A20, KRTAP5-7, KRTAP5-11, NDUFV1, NDUFS8, NUMA1, OVOL1, P2RY2, P2RY6, KCNK4, PC, GAL, KMT5B, PDE2A, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, LAMTOR1, ANO1, NADSYN1, FAM86C1, CCDC87, PPP2R5B, PPP6R3, RNF121, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, POLD4, KRTAP5-8, PTPRCAP, BBS1, PYGM, PLEKHB1, RAB6A, MAP4K2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RAD9A, RARRES3, RBM4, CCND1, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, SF1, ZFPL1, LRFN4, TMEM223, C11orf80, NAA40, ZBTB3, TMEM134, MUS81, FOSL1, CLPB, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, RELT, PPFIA1, LGALS12, CTSF, FADD, BANF1, ACTN3, GAL3ST3, ATG16L2, RPS6KA4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 AIP, SART1, AP5B1, FIBP, SYT12, ACY3, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, ARHGEF17, FCHSD2, FGF19, CCS, RCE1) 0.357929190752513 330 0.0639010892903215 1.00050223900787 19110 0.241046473502688 3 2 1 -6.81966072715926 LTS-037 NA NA NA NA LTS-037 chr11 73472135 73498933 26799 * c(MRPL48, RAB6A) 0.336 1 NA 0.845389726354935 9 0.148293440328439 2 2 0 -5.77665644257429 LTS-037 chr11 73498934 78365845 4866912 * c(KCNE3, KCTD21-AS1, TPBGL, NDUFC2-KCTD14, MIR4696, POLD3, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, RNF169, CHRDL2, TSKU, C2CD3, TENM4, LRRC32, AQP11, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, DNAJB13, LIPT2, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, COA4, PPME1, MRPL48, RSF1, ACER3, THAP12, EMSY, USP35, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UCP2, UCP3, NA NA NA NA NA NA NA NA NA LTS-037 UVRAG, WNT11, ALG8, NARS2, MOGAT2, PAAF1, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.355852875220579 164 0.0535502228324473 1.01377722325423 5572 0.266601593255336 3 2 1 -6.74569230535701 LTS-037 NA NA NA NA LTS-037 chr11 78365846 82444226 4078381 * c(MIR708, MIR4300, MIR5579, FAM181B, TENM4) 0.401825369926958 7 0.0835298634934722 1.15191057597824 347 0.263143936288762 3 2 1 -7.3001303725357 LTS-037 chr11 82444227 82550387 106161 * c(FAM181B, PRCP) 0.476 1 NA 1.22925641822182 61 0.447411822982208 4 4 0 -5.76584080560027 LTS-037 chr11 82550388 89154382 6603995 * c(SNORA70E, RAB30-AS1, LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, DLG2, DDIAS, CCDC83, CCDC89, RAB38, RAB30, GRM5, ANKRD42, NOX4, HIKESHI, PCF11, SYTL2, PRCP, TMEM126B, CREBZF, CCDC90B, CCDC81, TMEM135, TYR, PICALM, FZD4, TMEM126A, OR7E2P, EED) 0.437974098345618 63 0.0824658007596535 1.23595060121937 3120 0.333552871613387 4 2 2 -6.86555424009264 LTS-037 chr11 89154383 89155025 643 * NOX4 NA 0 NA 2.267 1 NA NA NA NA NA LTS-037 chr11 89155026 122968588 33813563 * c(NAALAD2, LOC100131626, LOC100132078, WTAPP1, NCAM1-AS1, MIR1304, BACE1-AS, MIR4301, MIR1260B, USP2-AS1, MIR3920, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4490, MIR4491, MIR4492, MIR4693, LOC100652768, JRKL-AS1, LOC101054525, RBM7, MPZL2, YAP1, HYOU1, ATP5L, GPR83, TREH, CARD16, TMEM123, APOA5, SLC36A4, FAT3, TRIM64, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, FAM76B, SESN3, PIWIL4, ARHGAP42, NA NA NA NA NA NA NA NA NA LTS-037 KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, AMOTL1, DEUP1, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FOLH1B, TBCEL, TMEM136, OAF, FDX1, CEP164, ENDOD1, EXPH5, PHLDB1, SIK2, ARHGEF12, SIK3, BACE1, TRIM29, CADM1, PANX1, FUT4, ANGPTL5, SLC37A4, ANKK1, RNF214, POU2F3, HINFP, REXO2, TIMM8B, CHORDC1, LINC00900, BCL9L, FOXR1, CCDC153, GRIA4, C11orf54, GRIK4, GUCY1A2, H2AFX, HMBS, BIRC2, BIRC3, HSPA8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, LOC341056, HEPHL1, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, VSTM5, TRIM77, IZUMO1R, KDM4E, BSX, C11orf87, COLCA1, C11orf88, MIR100HG, MIRLET7A2, MIR100, MIR125B1, MIR34B, MIR34C, DDI1, BLID, MCAM, KMT2A, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, CARD17, MTNR1B, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, NOX4, SIDT2, TRAPPC4, CWC15, PGR, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FXYD6, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, ANKRD49, TTC12, PPP2R1B, C11orf57, ELMOD1, KDM4D, VPS11, TEX12, CRTAM, TMPRSS4, IFT46, SMCO4, TRIM49, DSCAML1, CEP126, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, SCARNA9, RPS25, SC5D, SCN2B, SCN4B, SDHD, MMP27, ABCG4, TRIM64B, TRIM49C, UBTFL1, CXCR5, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, LOC649133, RPL23AP64, SNORA8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SLN, SORL1, SNORA18, SNORA40, TAGLN, SNORD5, TECTA, THY1, TRPC6, UPK2, ZBTB16, TAF1D, RNF26, DYNC2H1, NLRX1, CCDC82, ALG9, CLMP, PDZD3, C11orf63, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, BCO2, TMEM133, TMPRSS13, DCUN1D5, MSANTD4, MAML2, BUD13, TMEM25, UBASH3B, C11orf70, DIXDC1, CEP295, ZC3H12C, CBL, JRKL, ZPR1, MTMR2, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, MMP20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 UBE4A, MED17, CEP57, C2CD2L) 0.448873089446246 451 0.0654158722629843 1.2938875644914 22820 0.488650131582417 4 2 2 -6.77584369955 LTS-037 NA NA NA NA LTS-037 chr11 122968589 130131848 7163260 * c(PATE3, MIR3167, SENCR, MIR4493, KIRREL3-AS2, CHEK1, TIRAP, PANX3, TMEM45B, PATE1, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, HEPACAM, FLI1, VSIG2, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, DCPS, ZBTB44, DDX25, APLP2, TMEM225, OR8D4, STT3A, KCNJ1, KCNJ5, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, PATE2, PATE4, ST3GAL4-AS1, VWA5A, LINC00167, NA NA NA NA NA NA NA NA NA LTS-037 NFRKB, NRGN, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, PRDM10, GRAMD1B, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, ZNF202, FAM118B, MSANTD2, CLMP, CCDC15, PUS3, KIRREL3, RPUSD4, TBRG1, BARX2, ESAM, EI24, FEZ1, ARHGAP32) 0.451402871795409 226 0.0609067433576175 1.34609926913767 6264 0.355504103947466 4 2 2 -6.78817013615203 LTS-037 NA NA NA NA LTS-037 chr11 130131849 130238795 106947 * ZBTB44 NA 0 NA 3.442 1 NA NA NA NA NA LTS-037 chr11 130238796 130346572 107777 * c(ADAMTS8, ADAMTS15) 0.230655012885515 4 0.0125698050899765 2.56839884019662 257 0.67204026166328 5 4 1 -6.77224915642079 LTS-037 chr11 130346573 130542778 196206 * character(0) NA 0 NA 1.679 1 NA NA NA NA NA LTS-037 chr11 130542779 130587231 44453 * C11orf44 NA 0 NA 1.87147871589712 79 0.239488580659177 6 NA NA -5.76443935205791 LTS-037 chr11 130587232 130715959 128728 * C11orf44 NA 0 NA 1.079 1 NA NA NA NA NA LTS-037 chr11 130715960 134856661 4140702 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, MIR4697HG, LOC283177, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.446553122542575 44 0.0609807225283906 1.3311411131449 1578 0.326021777240113 4 2 2 -6.75320211622591 LTS-037 chr11 134856662 134856681 20 * character(0) NA 0 NA 1.166 1 NA NA NA NA NA LTS-037 chr12 90923 248071 157149 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.387 1 NA 0.960693292158107 47 0.296625068196083 3 3 0 -5.76940377492622 LTS-037 chr12 248072 6807591 6559520 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, CHD4, FBXL14, ZNF384, PIANP, DCP1B, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, LTBR, IQSEC3, NDUFA9, NINJ2, NOP2, NTF3, ING4, MRPL51, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, NA NA NA NA NA NA NA NA NA LTS-037 SLC6A13, LRTM2, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CCDC77, ACRBP, CRACR2A, DYRK4, CCND2, CD9, CACNA2D4, CD27, NCAPD2) 0.349963325571007 191 0.0536762017810614 1.02740034480073 7011 0.518106236848822 3 2 1 -6.75496889185355 LTS-037 NA NA NA NA LTS-037 chr12 6807592 6833460 25869 * c(PIANP, COPS7A) NA 0 NA 1.282 1 NA NA NA NA NA LTS-037 chr12 6833461 7302286 468826 * c(LPCAT3, LRRC23, EMG1, P3H3, C12orf57, PHB2, DSTNP2, ATN1, ENO2, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, MIR141, MIR200C, COPS7A, C1RL, PTMS, PTPN6, SCARNA12, C1R, C1S, TPI1, USP5, MLF2, CDCA3, RBP5, SPSB2, CD4, CLSTN3) 0.395878187082742 7 0.0512533390317622 1.57991000762568 1728 0.458301337506477 5 3 2 -6.75404830389773 LTS-037 chr12 7302287 7303159 873 * CLSTN3 NA 0 NA 1.105 1 NA NA NA NA NA LTS-037 chr12 7303160 9590154 2286995 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, CD163L1, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3, CLSTN3) 0.33961486759636 79 0.0696745878971437 0.987003831983558 2731 0.293654208863597 3 2 1 -6.81214343799816 LTS-037 chr12 9590155 9590570 416 * DDX12P NA 0 NA 0.649 1 NA NA NA NA NA LTS-037 chr12 9590571 9747240 156670 * DDX12P NA 0 NA 0.650942300183125 96 0.225275672982502 2 NA NA -5.79642752642017 LTS-037 chr12 9747241 9747288 48 * character(0) 0.353 1 NA 1.254 1 NA NA NA NA NA LTS-037 chr12 9747289 10579525 832237 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.345703854783321 32 0.080070130550984 0.937932914535597 1113 0.292759154150095 3 2 1 -6.80193796848954 LTS-037 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 1.908 1 NA NA NA NA NA LTS-037 chr12 10583165 10588530 5366 * c(KLRC2, KLRC3) 0.286399120585784 4 0.118840228878945 1.75113402148837 46 0.75329261400789 4 3 1 -6.73414717025321 LTS-037 chr12 10588531 10588555 25 * c(KLRC2, KLRC3) NA 0 NA 1.103 1 NA NA NA NA NA LTS-037 chr12 10588556 11036917 448362 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R10, MAGOHB, STYK1, PRB4, PRH1, YBX3) 0.453001581237819 7 0.0534032280101565 1.11927992901371 486 0.340571322201266 4 2 2 -6.84961286436529 LTS-037 chr12 11036918 11060486 23569 * c(PRH1-PRR4, PRB4) NA 0 NA 0.796 1 NA NA NA NA NA LTS-037 chr12 11060487 32943758 21883272 * c(MIR920, SMIM10L1, MANSC4, LINC00941, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, DDX11-AS1, PRH1-PRR4, DNM1L, ABCC9, MIR3974, RNU6-78P, DENND5B-AS1, OVCH1-AS1, CDKN1B, IPO8, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, FGD4, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, EMP1, EPS8, ETV6, STK38L, ETFBKMT, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, NA NA NA NA NA NA NA NA NA LTS-037 FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, OVCH1, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, LRP6, ART4, MGP, MGST1, SMCO3, H3F3C, TSPAN11, LOH12CR2, TAS2R13, TAS2R14, HEBP1, GOLT1B, YARS2, DERA, DDX47, ERGIC2, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, PKP2, SLCO1C1, PLEKHA5, MANSC1, KIAA1551, CASC1, CCDC91, PRB1, PRB3, PRB4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ETNK1, GPRC5D, PRH2, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, PRB2, SLCO1A2, CAPRIN2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, FLJ13224, PLBD1, PYROXD1, SPX, SSPN, DUSP16, APOLD1, GSG1, TMTC1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.329475553207191 317 0.0828455209761229 1.01311095313334 11896 0.284588268667263 3 2 1 -6.85171343140677 LTS-037 NA NA NA NA LTS-037 chr12 32943759 32943842 84 * PKP2 NA 0 NA 1.63 1 NA NA NA NA NA LTS-037 chr12 32943843 33049531 105689 * PKP2 0.483880502817218 4 0.0164595463687997 1.41556759755673 111 0.464659128625389 4 2 2 -9.67193987019073 LTS-037 chr12 33049532 33527156 477625 * PKP2 NA 0 NA 0.7 1 NA NA NA NA NA LTS-037 chr12 33527157 34180172 653016 * c(SYT10, ALG10) 0.384925962112008 2 0.0466690475583121 1.08622440352774 160 0.32974922521974 3 2 1 -6.90704991334919 LTS-037 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.01645133266618 15 0.266063866303527 3 NA NA -5.76441311981422 LTS-037 chr12 38710341 39836937 1126597 * c(ALG10B, CPNE8, KIF21A) 0.415 1 NA 0.955759692945687 393 0.247491780289149 3 3 0 -5.82334786391873 LTS-037 chr12 39836938 71533629 31696692 * c(HOTAIR, LOC100130075, AGAP2-AS1, PCED1B-AS1, TROAP, LOC100240734, LOC100240735, BCDIN3D-AS1, MIR1279, MIR1228, MIR1293, LOC100335030, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, BLOC1S1-RDH5, MIR4701, MIR3198-2, MIR4698, LOC100652999, HOXC13-AS, TSFM, CTDSP2, YAF2, CDK2, CDK4, RNF41, GDF11, TMEM5, CNPY2, TUBA1B, RAPGEF3, MCRS1, DCTN2, CCT2, AVIL, PTGES3, FRS2, OS9, ATF7, CPSF6, BAZ2A, NA NA NA NA NA NA NA NA NA LTS-037 WIF1, ADCY6, IRAK3, GALNT6, NXPH4, XPOT, KRT71, GPR182, LARP4, SLC2A13, MBD6, ARHGEF25, C12orf56, AGAP2, DCD, RAB3IP, MUCL1, LRRK2, FAM186A, OR2AP1, OR10P1, SDR9C7, LRIG3, RHEBL1, C12orf54, ZNF641, OR10AD1, SP7, GTSF1, OR10A7, KRT74, CNTN1, COL2A1, CPM, ASB8, MYL6B, KRT72, CS, PRICKLE1, BCDIN3D, BEST3, KRT80, C12orf66, CYP27B1, DGKA, GRASP, DDIT3, KRT78, DTX3, METTL7B, ANO6, ARID2, EIF4B, CELA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RPSAP52, ERBB3, ABCD2, COPZ1, R3HDM2, FAIM2, MON2, DDN, NEMP1, TBC1D30, ESYT1, TNS2, KCNH3, GRIP1, CBX5, ANP32D, SMUG1, LEMD3, STAC3, MSRB3, OR6C74, OR6C3, LINC00935, PRPF40B, B4GALNT1, METTL7A, LETMD1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, RND1, KCNMB4, GLI1, GNS, GPD1, LOC283332, LOC283335, ZNF740, RASSF3, OR6C6, ANKRD52, SLC39A5, SPRYD4, C12orf80, LINC00592, LINC01465, DPY19L2, C12orf40, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 GXYLT1, TMPRSS12, KRT6C, ORMDL2, TBK1, RACGAP1, SENP1, PDZRN4, NCKAP1L, NR4A1, HNRNPA1, APOF, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, C1QL4, KRT79, FAM19A2, ANKRD33, OR6C2, OR6C4, H1FNT, OR8S1, IFNG, AMIGO2, IGFBP6, AQP2, AQP5, INHBC, AQP6, ITGA5, ITGA7, ITGB7, KRT77, LRRC10, ARF3, KIF5A, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, CCDC184, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, OR6C1, OR6C75, OR6C76, OR6C70, LALBA, LINC00938, LOC400043, FLJ41278, FIGNL2, OR6C65, OR6C68, LRP1, MIRLET7I, LYZ, MIR196A2, MIR26A2, ASIC1, MARS, MDM2, METTL1, MIP, MMP19, DBX2, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, ATF1, NAB2, NACA, NELL2, NFE2, CNOT2, SLC11A2, PA2G4, ATP5B, IL22, DHH, PCBP2, PLEKHA8P1, IRAK4, FKBP11, KRT76, CSAD, BIN2, LIMA1, PDE1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PPHLN1, IL23A, HDAC7, TMBIM4, ATP5G2, PFDN5, PFKM, GPR84, SLC38A2, PRR13, POU6F1, KANSL2, PPP1R1A, SLC38A4, AVPR1A, SLC35E3, PRIM1, KIF21A, SLC48A1, PRKAG1, LMBR1L, IL26, CAND1, PRPH, MDM1, NDUFA4L2, NUP107, SMAGP, PPM1H, SRGAP1, TWF1, DIP2B, CALCOCO1, NCKAP5L, PTPRB, PTPRR, NEUROD4, RAB5B, RAP1B, RARG, RBMS2, RDH5, C12orf10, ATG101, RNY5, HIGD1C, RPL41, RPS26, TSPAN31, SCN8A, ARHGAP9, IKZF4, GLYCAM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SHMT2, PMEL, SLC26A10, SPATS2, SMARCC2, SMARCD1, SP1, STAT2, SNORA2A, SNORA2B, STAT6, SNORA2C, SUOX, TAC3, TARBP2, SNORD59B, MIR548C, MIR615, TMBIM6, TFCP2, TSPAN8, VDR, WNT1, WNT10B, MAP3K12, CACNB3, TUBA1A, TMEM106C, NABP2, RPAP3, PIP4K2C, DNAJC22, ADAMTS20, KMT2D, AAAS, YEATS4, HMGA2, SLC38A1, CSRNP2, PUS7L, INHBE, RACGAP1P, FAM186B, TMEM117, LLPH, PYM1, SARNP, SOAT2, DYRK2, TUBA1C, ZC3H10, SPRYD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MFSD5, COX14, DNAJC14, ZCRB1, CCDC65, RDH16, NPFF, HSD17B6, ENDOU, TIMELESS, LACRT, CCNT1, ACVR1B, FMNL3, CERS5, KRT75, ATP23, PCED1B, SCAF11, SLC16A7, HELB, MARCH9, COQ10A, ACVRL1, DDX23, SLC4A8, CD63, ESPL1, DAZAP2, TESPA1, ZBTB39, PAN2, USP15) 0.358122650440095 638 0.0738219620537502 1.01122693228646 34079 0.467265986402857 3 2 1 -6.7586716493104 LTS-037 NA NA NA NA LTS-037 chr12 71533630 71537897 4268 * TSPAN8 NA 0 NA 2.369 1 NA NA NA NA NA LTS-037 chr12 71537898 72051127 513230 * c(ZFC3H1, TSPAN8, LGR5) 0.422 1 NA 1.58734517493029 336 0.448346344032751 5 5 0 -5.76451362115167 LTS-037 chr12 72051128 72056779 5652 * ZFC3H1 NA 0 NA 1.039 1 NA NA NA NA NA LTS-037 chr12 72056780 82872862 10816083 * c(MIR1252, LOC100507377, MIR4699, GLIPR1, KRR1, OSBPL8, TPH2, GLIPR1L2, E2F7, CSRP2, ZFC3H1, PHLDA1, RAB21, ZDHHC17, GLIPR1L1, OTOGL, TRHDE-AS1, CCDC59, TRHDE, PTPRQ, KCNC2, MYF5, MYF6, PPP1R12A, NAP1L1, PAWR, TMEM19, ATXN7L3B, TBC1D15, SYT1, MIR617, MIR618, MRS2P2, ACSS3, BBS10, THAP2, METTL25, CAPS2, PPFIA2, LIN7A, NAV3) 0.343632223407073 71 0.0993914906340718 1.0024639875824 4466 0.367602821873626 3 2 1 -6.78136632549499 LTS-037 chr12 82872863 82872925 63 * METTL25 NA 0 NA 1.446 1 NA NA NA NA NA LTS-037 chr12 82872926 88389572 5516647 * c(MIR548AL, TSPAN19, TMTC2, C12orf50, MGAT4C, MKRN9P, NTS, SLC6A15, ALX1, LRRIQ1, METTL25, RASSF9) 0.385077675155161 16 0.0622338332420557 1.13402551778291 807 0.404538231070105 3 2 1 -7.01376450060092 LTS-037 chr12 88389573 88390122 550 * C12orf50 NA 0 NA 0.899 1 NA NA NA NA NA LTS-037 chr12 88390123 107367457 18977335 * c(TMPO-AS1, PGAM1P5, LOC100287944, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, POC1B-GALNT4, MIR5700, PLXNC1, CKAP4, METAP2, KERA, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, TMTC3, C12orf50, ALDH1L2, SLC5A8, DCN, EPYC, DUSP6, FAM71C, RMST, CCER1, ELK3, UHRF1BP1L, KIAA1033, SLC17A8, TTC41P, TCP11L2, LINC01619, UTP20, NA NA NA NA NA NA NA NA NA LTS-037 POC1B, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, LINC00936, C12orf74, IGF1, C12orf42, C12orf75, ARL1, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MYBPC1, NFYB, ATP2B1, EID3, SYCP3, CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, RIC8B, APPL2, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, POLR3B, FGD6, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, NTN4, RFX4, LOC643339, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, CEP290, GLT8D2, USP44, SLC41A2, EEA1, GALNT4, CRADD, SOCS2, TMEM263, C12orf29, NUAK1, NR1H4) 0.344728810324284 263 0.071775051563041 0.994614454170609 11863 0.398631798612109 3 2 1 -6.8407107239714 LTS-037 NA NA NA NA LTS-037 chr12 107367458 107486863 119406 * c(CRY1, MTERF2, TMEM263) 0.304 1 NA 0.930769136915378 91 0.244869809170554 3 3 0 -5.77631928187096 LTS-037 chr12 107486864 109702936 2216073 * c(USP30-AS1, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, CMKLR1, CRY1, DAO, ISCU, CORO1C, ACACB, TMEM119, SSH1, SVOP, SELPLG, LOC728739, UNG, USP30, WSCD2, SART3) 0.366511527259189 40 0.0841814889208018 0.998283634741227 2186 0.285394571076499 3 2 1 -6.75092456549128 LTS-037 chr12 109702937 110318235 615299 * c(MIR4497, FOXN4, MYO1H, ACACB, MMAB, MVK, GLTP, TRPV4, KCTD10, FAM222A, FAM222A-AS1, UBE3B) 0.331508601757005 47 0.0415493977264876 1.07204168365794 1201 1.20000608824362 6 4 2 -6.90650319007188 LTS-037 chr12 110318236 113275643 2957408 * c(LINC01405, SH2B3, ARPC3, TRAFD1, ERP29, RAD9B, FAM109A, PPTC7, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, IFT81, FAM216A, C12orf76, MYL2, ATP2A2, GPN3, GLTP, MAPKAPK5-AS1, ANAPC7, VPS29, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, TCHP, HVCN1, MAPKAPK5, ADAM1A, ANKRD13A, TMEM116, GIT2) 0.3706812741292 48 0.0879176657870692 0.964349326401649 3989 0.258352943225813 3 2 1 -6.85006552636426 LTS-037 chr12 113275644 113279748 4105 * RPH3A NA 0 NA 1.407 1 NA NA NA NA NA LTS-037 chr12 113279749 120648428 7368680 * c(LINC00173, MIR1178, PXN-AS1, MIR4498, MIR4472-2, GCN1, SDS, RAB35, CIT, SDSL, IQCD, LINC00934, CCDC60, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, HSPB8, KSR2, CFAP73, TMEM233, NOS1, OAS1, OAS2, OAS3, PEBP1, TAOK3, TPCN1, VSIG10, TESC, PRKAB1, WSB2, PXN, RFC5, RPLP0, LHX5, MAP1LC3B2, SUDS3, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, SRRM4, RNFT2, RITA1, HRK, BICDL1, RBM19 NA NA NA NA NA NA NA NA NA LTS-037 ) 0.344028758305705 164 0.0786960458618854 1.02544181608771 5286 0.270301547379197 3 2 1 -6.75895751837979 LTS-037 NA NA NA NA LTS-037 chr12 120648429 124322984 3674556 * c(MIR4304, MIR3908, PXN-AS1, NRAV, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, COX6A1, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, SIRT4, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GATC, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, MSI1, P2RX4, P2RX7, ARL6IP4, POP5, ANAPC5, TRIAP1, PLA2G1B, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, NA NA NA NA NA NA NA NA NA LTS-037 DDX55, PXN, BCL7A, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, TCTN2, RNF34, CDK2AP1, COQ5, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, DYNLL1, SRSF9, HCAR3, HIP1R, C12orf65, CABP1, KNTC1, MLEC, RNF10) 0.349915853117052 154 0.0759260805912315 0.964388172837337 6719 0.25965683871926 3 2 1 -6.87696463542833 LTS-037 NA NA NA NA LTS-037 chr12 124322985 124323029 45 * DNAH10 0.284 1 NA 1.889 1 NA NA NA NA NA LTS-037 chr12 124323030 133639529 9316500 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NA NA NA NA NA NA NA NA NA LTS-037 NOC4L, CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.347029969004283 160 0.0581333558949598 1.02888886304934 5836 0.3198072797828 3 2 1 -6.76386409830343 LTS-037 NA NA NA NA LTS-037 chr12 133639530 133639640 111 * character(0) NA 0 NA 0.795 1 NA NA NA NA NA LTS-037 chr12 133639641 133812415 172775 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.442087543266413 25 0.0469229155104412 0.697873086811227 511 0.176369654206679 2 1 1 -6.75460404529742 LTS-037 chr12 133812416 133812708 293 * ANHX NA 0 NA 0.566149539352298 7 0.0972745256135096 1 NA NA -5.76526386086589 LTS-037 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.075 1 NA 1.20870124200954 3 0.577329195520199 4 4 0 -5.76857675942787 LTS-037 chr13 19600476 25603513 6003038 * c(ANKRD26P3, LINC00421, MIR2276, SACS-AS1, LINC00327, MIR4499, RNU6-52P, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, TPTE2P6, C1QTNF9B, ANKRD20A19P, MIPEP, ATP12A, CRYL1, IL17D, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, XPO4, SGCG, BASP1P1, TPTE2P1, MIPEPP3, TUBA3C, ZMYM2, MRPL57, IFT88, ZMYM5, TPTE2) 0.117355281490188 72 0.045645601443539 0.718037792625872 3350 0.227058090759263 2 2 0 -6.81300634049668 LTS-037 chr13 25603514 25670497 66984 * PABPC3 NA 0 NA 0.610489243633992 8 0.293792808430898 2 NA NA -5.78224181028323 LTS-037 chr13 25670498 25670851 354 * PABPC3 0.371 1 NA 1.00715589525174 7 0.464620070082868 3 3 0 -5.76441056985439 LTS-037 chr13 25670852 25671292 441 * PABPC3 0.358019270587856 15 0.0278798442299399 1.37255195165109 29 0.384641250551232 17 11 6 -6.73649047489492 LTS-037 chr13 25671293 25671483 191 * PABPC3 NA 0 NA 0.886611880419729 4 0.103056618742644 3 NA NA -5.76464695533536 LTS-037 chr13 25671484 25821450 149967 * c(AMER2, PABPC3, MTMR6) 0.154 1 NA 0.73828365795836 281 0.178365047052857 2 2 0 -5.76450920547221 LTS-037 chr13 25821451 52513306 26691856 * c(LINC00462, LINC00426, TPT1-AS1, PAN3-AS1, MIR548F5, MIR320D1, MIR4305, MINOS1P1, MIR3613, OR7E37P, TEX26-AS1, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, LINC00297, DLEU7-AS1, MTUS2-AS1, LINC00332, LINC00366, LINC00398, LINC00423, LINC00457, LINC00571, STARD13-AS, RNASEH2B-AS1, SMIM2-IT1, FRY, LPAR6, SLC25A15, LHFP, TRIM13, USPL1, CDK8, MRPS31, NA NA NA NA NA NA NA NA NA LTS-037 DLEU1, N4BP2L2, CDX2, POSTN, HSPH1, WASF3, RCBTB2, WBP4, AKAP11, EXOSC8, ARL11, WDFY2, N4BP2L2-IT2, LINC00284, CSNK1A1L, RXFP2, TEX26, CPB2, FAM216B, LACC1, LINC00330, ST13P4, B3GLCT, DGKH, CCDC122, STOML3, EEF1DP3, ELF1, ESD, USP12, MTIF3, GSX1, ERICH6B, SPERT, DLEU7, FAM124A, CTAGE10P, LNX2, FNDC3A, PDS5B, VWA8, FOXO1, ZC3H13, SPG20, LRCH1, FLT1, FLT3, MTUS2, ALOX5AP, SLC25A30, PAN3, INTS6, NUFIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNORD102, NBEA, GPR12, SUGT1P3, SIAH3, KCNRG, LINC00282, SLC46A3, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GTF3A, GUCY1B2, ALG5, HMGB1, HTR2A, FREM2, PDX1, KPNA3, KCTD4, RASL11A, SHISA2, NHLRC3, SERP2, LCP1, SERTM1, LINC00547, LINC00548, MIR16-1, SMAD9, ATP5EP2, LINC00544, POLR1D, PHF11, POMP, UFM1, ATP8A2, ATP7B, UBL3, SOHLH2, ENOX1, RCBTB1, NUDT15, GPALPP1, SUPT20H, CYSLTR2, SPRYD7, COG6, RB1, RFC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RFXAP, RNF6, RPL21, SNORA27, TSC22D1-AS1, URAD, ZAR1L, LINC00598, LINC00371, SERPINE3, SLC7A1, BRCA2, SNORA31, MIR621, TPT1, TRPC4, CCDC169, NAA16, RNASEH2B, DHRS12, RUBCNL, PROSER1, CDADC1, CAB39L, CCDC70, COG3, SETDB2, KATNAL1, KBTBD7, EBPL, MEDAG, TNFSF11, SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, STARD13, N4BP2L1, MTMR6, DCLK1, KL, EPSTI1, ITM2B, MTRF1, NUP58) 0.124362755612727 269 0.051911176961362 0.726780602541715 13987 0.380390870317682 2 2 0 -6.80365105655125 LTS-037 NA NA NA NA LTS-037 chr13 52513307 52607132 93826 * c(ALG11, ATP7B, UTP14C) 0 1 NA 0.721210300649872 249 0.186000654629163 2 2 0 -5.76580825740362 LTS-037 chr13 52607133 60850015 8242883 * c(MIR1297, MIR759, MIR5007, LINC00558, DIAPH3-AS1, DIAPH3-AS2, MRPS31P5, OLFM4, SUGT1, LECT1, HNRNPA1L2, TPTE2P3, CKAP2, PCDH17, NEK5, NEK3, PCDH8, VPS36, THSD1, PRR20B, PRR20D, PRR20E, DIAPH3, UTP14C) 0.0757071033566021 5 0.0382256458415028 0.744773108823345 1132 0.275016779919969 2 2 0 -7.30957566204414 LTS-037 chr13 60850016 61013702 163687 * TDRD3 NA 0 NA 1.075 1 NA NA NA NA NA LTS-037 chr13 61013703 114758138 53744436 * c(LINC00552, FKSG29, UBAC2-AS1, MCF2L-AS1, MIR4306, MIR3170, MIR3169, MIR3665, RBM26-AS1, GAS6-AS2, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, LINC00565, GPC5-AS1, GPC6-AS2, PCDH9-AS2, PCDH9-AS3, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00381, LINC00433, LINC00443, LINC00446, LINC00559, CLDN10-AS1, COL4A2-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00348, MYO16-AS1, NA NA NA NA NA NA NA NA NA LTS-037 LINC00359, MBNL2, FARP1, SPRY2, ABCC4, TUBGCP3, PIBF1, TNFSF13B, SOX21, KLF12, ADPRHL1, SLITRK1, KCTD12, CLN5, TEX29, METTL21EP, SLAIN1, SPACA7, COL4A1, COL4A2, RNF113B, LINC00410, LINC00343, DACH1, GPR180, DCT, COMMD6, CLYBL, GPR183, EDNRB, EFNB2, METTL21C, ERCC5, F7, F10, FGF14, GPC5, RASA3, DZIP1, DIS3, MYO16, MYCBP2, ATP11A, MCF2L, DOCK9, TGDS, NALCN, SLITRK5, GAS6, FBXL3, HS6ST3, DAOA, OXGR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, LINC00346, OR7E156P, GPR18, UBAC2, LINC00550, LINC00347, TMEM255B, ING1, IPO5, LAMP1, LIG4, ATP11AUN, LMO7, MIR19B1, MIR17HG, MZT1, ATP4B, PCCA, PCDH9, POU4F1, NDFIP2, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, UGGT2, PCID2, DNAJC3, KLHL1, RAP2A, GRK1, ATXN8OS, RBM26, MIR4500HG, CCDC168, CTAGE11P, PCDH20, GAS6-AS1, SLC10A2, SLC15A1, SOX1, KLF5, BTF3P11, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIR622, MIR623, TFDP1, TPP2, LINC00460, FAM155A, LMO7DN, ACOD1, UCHL3, ZIC2, KDELC1, CARS2, RNF219, GRTP1, BORA, TDRD3, SLITRK6, STK24, CUL4A, TMTC4, ABHD13, ZIC5, IRS2, GGACT, SCEL, PROZ, ARHGEF7, CLDN10, TEX30, ITGBL1, TM9SF2, TBC1D4) 0.0674459695060609 267 0.0361552056572314 1.30370636219301 12859 0.41676929567778 4 4 0 -6.74839693171899 LTS-037 NA NA NA NA LTS-037 chr13 114758139 114762066 3928 * RASA3 NA 0 NA 1.112 1 NA NA NA NA NA LTS-037 chr13 114762067 115091399 329333 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.0652131354955124 11 0.0464699316273926 1.19003299627142 301 0.536215574985605 4 4 0 -6.73983622846725 LTS-037 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 1.00387627274037 29 0.139718726948461 3 NA NA -5.76443589991133 LTS-037 chr14 19434116 20248828 814713 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.328 1 NA 1.19564167597818 75 0.237617301520706 4 4 0 -5.84120542816117 LTS-037 chr14 20248829 20404847 156019 * c(OR4N2, OR4K2, OR4M1, OR4K5, OR4K1) 0.317027129710865 7 0.0245473303756524 1.11333872816156 126 0.196067354316244 4 3 1 -7.80037288498891 LTS-037 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.614 1 NA NA NA NA NA LTS-037 chr14 20443534 22471922 2028389 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-037 TEP1, OR4K15, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.462035361989683 94 0.0293887472882051 0.758431520938878 3537 0.562792506541455 2 1 1 -7.15870551755484 LTS-037 NA NA NA NA LTS-037 chr14 22471923 22475771 3849 * character(0) NA 0 NA 1.074 1 NA NA NA NA NA LTS-037 chr14 22475772 22990996 515225 * character(0) 0.439102312442605 22 0.0306655255763611 0.922537755877692 622 0.228523614656427 2 1 1 -7.00384297434751 LTS-037 chr14 22990997 38725601 15734605 * c(MIR208B, SLC25A21-AS1, MIR4307, LINC00645, LOC100506071, NEDD8-MDP1, BCL2L2-PABPN1, MIR4503, MIR548AI, MIR4707, PTCSC3, LINC00609, DHRS2, EFS, IRF9, PRMT5, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, CMA1, MRPL52, PSMB11, LTB4R, MIPOL1, MDP1, CTSG, DAD1, CLEC14A, FITM1, REM2, NOP9, COCH, SPTSSA, ADCY4, FOXG1, ACIN1, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, HECTD1, HEATR5A, NA NA NA NA NA NA NA NA NA LTS-037 NGDN, LRP10, NKX2-8, TINF2, CIDEB, IGBP1P1, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, FOXA1, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OXA1L, PAX9, EMC9, PCK2, GMPR2, SLC22A17, MBIP, HAUS4, PPP2R3C, C14orf119, RNF31, RBM23, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, SNX6, RABGGTA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 BCL2L2, C14orf93, ABHD4, NPAS3, CBLN3, CDH24, IL25, SRP54, SSTR1, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, AJUBA, ZFHX2, AP1G2, SLC25A21, SLC7A7, CARMIL3, PPP1R3E, CPNE6, AKAP6, KIAA0391, REC8) 0.448830617765392 205 0.0535031417662719 0.746800091124476 11372 0.202614448830267 2 1 1 -6.77215842421351 LTS-037 NA NA NA NA LTS-037 chr14 39501079 73989983 34488905 * c(MED6, SNORD127, KTN1-AS1, LOC100288846, LOC100289511, OTX2-AS1, MIR4308, MIR548Y, LOC100506321, LINC00871, LINC00648, NA, SYNJ2BP-COX16, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, MIR5580, FRMD6-AS2, CNIH1, GPHN, CDKN3, SEC23A, VTI1B, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, WDR89, L3HYPDH, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, GPHB5, RPL10L, RDH12, ADAM21P1, PPP1R36, SLC38A6, C14orf37, NA NA NA NA NA NA NA NA NA LTS-037 FRMD6-AS1, ABHD12B, LOC145474, LRFN5, FAM71D, TMEM229B, ACTN1-AS1, TMEM30B, MDGA2, EIF2S1, LINC01599, ERH, ESR2, NID2, ATG14, FKBP3, ZBTB1, PCNX1, DAAM1, SAMD4A, FAM179B, SYNE2, FNTB, ZFYVE26, TTC9, KLHDC2, FUT8, FBXO33, PLEKHG3, SIPA1L1, DCAF4, GCH1, PLEK2, TIMM9, ATP5S, KCNH5, GMFB, LINC01588, LINC00640, GPR137C, GPX2, ERO1A, HIF1A, ADAM20P1, C14orf39, SNORD56B, HSPA2, SLC35F4, LRRC9, RAB15, PSMA3-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ARF6, ARG2, TBPL2, TOMM20L, KTN1, LGALS3, HEATR4, FLJ22447, PLEKHD1, MAX, MGAT2, MIA2, MAP3K9, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, OTX2, ATL1, RDH11, NIN, COX16, DACT1, ATP6V1D, JKAMP, DHRS7, C14orf166, SIX4, PIGH, ZFYVE1, PNN, POLE2, GNG2, KLHL28, TMEM260, PPM1A, PRPF39, FBXO34, DNAAF2, C14orf105, EXD2, PPP2R5E, MIS18BP1, SYNJ2BP, SLC39A9, AP5M1, PRKCH, ACTR10, PSEN1, PSMA3, CCDC177, PSMC6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PELI2, PTGDR, PTGER2, RHOJ, GALNT16, PLEKHH1, TXNDC16, TRMT5, FANCM, PYGL, RBM25, RAD51B, ARID4A, SAV1, RPL36AL, RPS29, RTN1, SMOC1, SRSF5, MPP5, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, GNPNAT1, SIX1, BMP4, SLC8A3, SLC10A1, SNAPC1, SOS2, SPTB, ZFP36L1, STYX, CCDC175, ZBTB25, VCPKMT, L2HGDH, DDHD1, DPF3, SGPP1, TMX1, SYT16, FSCB, GEMIN2, NUMB, ACTN1, ADAM21, ADAM20, CDKL1, DCAF5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PAPLN, NEMF, CHURC1, MAPK1IP1L, AKAP5, RGS6, SUSD6, KIAA0586, DLGAP5) 0.442898781937748 393 0.0697693153252893 0.723592378874557 20031 0.227475589972492 2 1 1 -6.99737567185603 LTS-037 NA NA NA NA LTS-037 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.002 1 NA NA NA NA NA LTS-037 chr14 74003792 74020989 17198 * c(HEATR4, ACOT1) NA 0 NA 0.157999531702066 40 0.217292133207454 0 NA NA -5.76573866264344 LTS-037 chr14 74020990 74021088 99 * c(HEATR4, ACOT1) NA 0 NA 0.095 1 NA NA NA NA NA LTS-037 chr14 74021089 75002775 981687 * c(MIR4505, MIR4709, NPC2, ACOT2, ISCA2, ACOT4, PTGR2, FAM161B, VSX2, HEATR4, LTBP2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, ACOT1, ACOT6, SYNDIG1L, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.448131990052921 46 0.077791524320061 0.715291358572423 1918 0.809328295896071 2 1 1 -6.74784055814018 LTS-037 chr14 75002776 75022247 19472 * LTBP2 NA 0 NA 0.763852761193381 30 0.165326236175073 2 NA NA -5.76474829419824 LTS-037 chr14 75022248 75128316 106069 * c(LTBP2, AREL1) 0.207 1 NA 0.939453493215959 47 0.221894923503853 3 3 0 -5.77501229118287 LTS-037 chr14 75128317 75320117 191801 * c(PROX2, FCF1, YLPM1, AREL1) 0.312555702459315 9 0.0324041321096211 0.979666747971615 441 0.218999242728853 4 3 1 -7.41033354471537 LTS-037 chr14 75320118 75359670 39553 * c(DLST, PROX2) 0.37 1 NA 0.968905439685395 115 0.158516026279168 3 3 0 -5.76778329939968 LTS-037 chr14 75359671 75373295 13625 * c(DLST, RPS6KL1) 0.381065568215358 2 0.036062445840514 0.983693126487673 86 0.165938844980908 3 2 1 -6.92729849541638 LTS-037 chr14 75373296 77229016 1855721 * c(BATF, TMED10, C14orf1, IFT43, JDP2, ESRRB, VASH1, TTLL5, FOS, MLH3, PGF, FLVCR2, GPATCH2L, TGFB3, LINC01220, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1) 0.450214083273674 44 0.0758184483064253 0.732924343540651 1740 0.526793996769221 2 1 1 -6.75349088205571 LTS-037 chr14 77229017 77686471 457455 * c(LRRC74A, VASH1, ANGEL1, ZDHHC22, TMEM63C, IRF2BPL, CIPC) 0.346442130719885 13 0.0493893479639861 1.02283710840074 612 0.270946427646435 3 2 1 -6.7796238775384 LTS-037 chr14 77686472 77691722 5251 * TMEM63C NA 0 NA 0.616 1 NA NA NA NA NA LTS-037 chr14 77691723 102968709 25276987 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1260A, MIR1197, MIR1193, MIR3173, TUNAR, MEG9, MIR2392, DIO2-AS1, MIR5698, LINC00911, FBLN5, AHSA1, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, SERPINA3, AK7, IFI27L1, NOXRED1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, ISM2, CEP128, TTC7B, SYNE3, SAMD15, EML5, DIO2, DIO3, DYNC1H1, NA NA NA NA NA NA NA NA NA LTS-037 EML1, SNW1, DICER1, FLRT2, LINC00521, SERPINA11, GALC, TMEM251, TCL6, TMED8, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, GSTZ1, GTF2A1, POMT2, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, KCNK13, C14orf132, PSMC1, DDX24, ADCK1, TMEM63C, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 UNC79, BEGAIN, PPP4R4, NGB, MOK, MIR487A, BDKRB1, BDKRB2, VIPAS39, SEL1L, MOAP1, BCL11B, MIR539, MIR376A2, MIR487B, SNORA79, MIR411, MIR654, MIR655, MIR656, TSHR, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, TCL1A, SLIRP, IFI27L2, SETD3, HHIPL1, GON7, GPR65, STON2, SERPINA6, DLK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CCNK, ALKBH1, FAM181A, EFCAB11, WDR20, RPS6KA5, TRIP11, NRXN3, SPTLC2, TCL1B, TECPR2, GOLGA5) 0.444345879471009 276 0.0631524423515596 0.738233570062388 15200 0.210864502948949 2 1 1 -6.75463676971379 LTS-037 NA NA NA NA LTS-037 chr14 102968710 103059548 90839 * c(MIR4309, ANKRD9, RCOR1, TECPR2) NA 0 NA 0.506322366370463 47 0.216908358282229 1 NA NA -5.77668895835561 LTS-037 chr14 103059549 103059551 3 * RCOR1 NA 0 NA 0.696 1 NA NA NA NA NA LTS-037 chr14 103059552 107013201 3953650 * c(ZBTB42, LINC00605, MIR203B, MIR4710, SIVA1, AHNAK2, CKB, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, EIF5, ELK2AP, AKT1, RCOR1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, LINC00226, LINC00221, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, MARK3, CDCA4, INF2, RD3L, TEX22, SNORA28, TNFAIP2, TRAF3, XRCC3, ZFYVE21, TMEM121, AMN, APOPT1, ADAM6, BTBD6, NA NA NA NA NA NA NA NA NA LTS-037 MTA1, EXOC3L4, BAG5, C14orf2, CDC42BPB, FAM30A) 0.433958480094876 180 0.073490178258285 0.730527079938619 5571 0.223032185041933 2 1 1 -6.74663356119606 LTS-037 NA NA NA NA LTS-037 chr14 107013202 107034920 21719 * character(0) 0.227 1 NA 0.973048921137744 8 0.0911786903362215 3 3 0 -5.76923644675939 LTS-037 chr14 107034921 107259629 224709 * character(0) 0.20789485620237 11 0.169392068076615 0.817328701158176 87 0.251280648241563 2 2 0 -6.92766747879968 LTS-037 chr14 107259630 107283157 23528 * character(0) NA 0 NA 0.681570605322509 17 0.150558348079642 2 NA NA -5.76899603204422 LTS-037 chr15 20169987 20446043 276057 * character(0) 0.468 1 NA 1.53452445623842 24 0.366510451736215 5 5 0 -5.76659079771544 LTS-037 chr15 20446044 22690558 2244515 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.317362539532857 32 0.0964123316884977 1.89346373588111 282 0.984190764148767 7 5 2 -6.77334421139714 LTS-037 chr15 22690559 22833360 142802 * c(GOLGA8DP, GOLGA6L1) NA 0 NA 0.652 1 NA NA NA NA NA LTS-037 chr15 22833361 40846340 18012980 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-037 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, SRP14-AS1, ANKRD63, HERC2P7, WHAMMP1, LOC100288637, LOC100289656, MIR1233-2, MIR3942, DPH6-AS1, MIR4508, MIR4510, MIR4715, TMCO5B, LOC100996255, RASGRP1, GPR176, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CHST14, CHRM5, CHRNA7, TUBGCP5, NIPA1, PWAR1, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, FSIP1, BAHD1, FAN1, GOLGA8A, CYFIP1, FAM189A1, NPAP1, LPCAT4, GABRA5, GABRB3, NUTM1, GABRG3, DKFZP434L187, GREM1, LOC283683, LOC283710, FAM98B, GOLGA8IP, APBA2, SNORD109B, SNORD115-1, WHAMMP3, FMN1, PWAR4, PWARSN, MRPL42P5, IPW, IVD, C15orf52, GOLGA8EP, HERC2P10, HERC2P2, C15orf53, C15orf54, MIR211, MEIS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TRPM1, GOLGA6L22, HERC2P9, WHAMMP2, GOLGA8B, EIF2AK4, NDN, OCA2, LINC00929, EMC4, KLF13, PLCB2, MAGEL2, MTMR10, ZNF770, NOP10, NSMCE3, EMC7, PAK6, AVEN, ATP10A, GJD2, RYR3, SCG5, C15orf56, PHGR1, PDCD6IPP2, GOLGA8S, GOLGA8T, SNRPN, SRP14, ACTC1, BUB1B, THBS1, TJP1, ANP32AP1, SNORD116-19, GOLGA8O, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, KATNBL1, PWAR5, NIPA2, C15orf41, DISP2, HERC2, SNURF, CHRFAM7A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6) 0.343099263237059 225 0.0765005402512306 1.00089418377564 9846 0.331246955373539 3 2 1 -6.83552120925827 LTS-037 NA NA NA NA LTS-037 chr15 40846341 40849062 2722 * C15orf57 NA 0 NA 0.571 1 NA NA NA NA NA LTS-037 chr15 40849063 40866081 17019 * c(RPUSD2, C15orf57) 0.470305187842338 2 0.0176776695296637 0.672309570850188 66 0.164662409465273 2 1 1 -8.38865308058125 LTS-037 chr15 40866082 40956454 90373 * c(RPUSD2, KNL1) 0.376074084602604 8 0.0807142225031358 0.933529598338629 261 0.195663381189684 3 2 1 -6.76931746360655 LTS-037 chr15 40956455 40956471 17 * character(0) 0.447 1 NA 3.248 1 NA NA NA NA NA LTS-037 chr15 40956472 41388597 432126 * c(RAD51-AS1, RHOV, GCHFR, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, VPS18, RAD51, C15orf62, SPINT1, CHAC1, ZFYVE19) 0.414940781524993 8 0.163403094917359 1.2739981394835 998 0.322965541139256 4 2 2 -6.74582627744549 LTS-037 chr15 41388598 41455419 66822 * INO80 NA 0 NA 1.03 1 NA NA NA NA NA LTS-037 chr15 41455420 86311767 44856348 * c(NR2E3, MIR147B, DNM1P35, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, NA, UBE2Q2P2, JMJD7, PLA2G4B, BCL2L10, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR1266, MIR1282, NDUFAF4P1, MIR548H4, MIR2116, MIR4311, MIR4312, MIR4310, MIR4313, NA, UBE2Q2L, IQCH-AS1, LINC00933, ST20-MTHFS, SERF2-C15ORF63, DYX1C1-CCPG1, MIR4514, MIR4513, MIR4716, MIR4713, MIR4511, MIR4712, MIR4515, SCAMP2, SNUPN, PDCD7, MYZAP, MIR5003, TSPAN3, NA NA NA NA NA NA NA NA NA LTS-037 FEM1B, SERF2, ADAM10, DENND4A, SNAPC5, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, GNB5, ARPP19, CLPX, MORF4L1, SLC27A2, ADAMTS7, AKAP13, CHP1, CASC4, OIP5, CHRNA3, CHRNA5, LACTB, CHRNB4, DIS3L, CKMT1B, TGM7, CATSPER2, CLK3, LEO1, C15orf40, SENP8, MTFMT, SLC51B, HIGD2B, TMEM266, HYKK, WHAMM, FSD2, PLA2G4E, CRABP1, TRIM69, CSK, TERB2, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DRAIC, C15orf61, NRG4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZSCAN29, TTBK2, CDAN1, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CYP19A1, STRC, CFAP161, TBC1D21, DYX1C1, ODF3L1, ADAL, EXD1, DUT, SCAMP5, FAM227B, CT62, GRAMD2, MGC15885, LCTL, UBR1, PATL2, EPB42, ETFA, FAH, FBN1, FGF7, ITGA11, CEP152, MAPKBP1, ZNF609, TBC1D2B, RTF1, MESDC2, ACSBG1, KIAA1024, MGA, DMXL2, VPS39, TMED3, AP4E1, SEC11A, CCNDBP1, DAPK2, EID1, SPESP1, LINGO1-AS1, PLA2G4F, LRRC57, GABPB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LYSMD2, WDR72, SNX33, HYPK, ARIH1, GALK2, SIN3A, GANC, TMEM87A, ULK3, RPAP1, GLCE, PYGO1, BLOC1S6, FBXO22, GATM, NPTN, FOXB1, TUBGCP4, HMGN2P46, SLC24A5, PRTG, LINC00926, EWSAT1, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, PLA2G4D, FBXL22, SCG3, PDIA3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, HEXA, EHD4, ONECUT1, TMEM202, LOC338963, IDH3A, GLDN, GOLGA6A, TMC3, RBPMS2, ANKDD1A, IL16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 IREB2, AQP9, ISLR, ITPKA, USP50, TEX9, GOLGA6L5P, TNFAIP8L3, C2CD4B, C15orf59, GOLGA2P7, UBE2Q2P1, KBTBD13, UBAP1L, SKOR1, ANKRD34C, ADAMTS7P1, LIPC, SHC4, CTXN2, ST20, LOXL1, DUOXA2, LTK, MIR184, MIR190A, SMAD3, SMAD6, MAN2C1, MAP1A, LINC00593, MFAP1, MPI, CATSPER2P1, UNC13C, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, MYO1E, MYO5A, MYO9A, NEDD4, NEO1, NMB, OAZ2, SCAPER, DUOX2, MYEF2, HDGFRP3, RPS27L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NDUFAF1, RSL24D1, NUSAP1, RASL12, SPG21, SPTBN5, HACD3, CTDSPL2, PDE8A, RAB8B, PKM, BTBD1, TM6SF1, PML, DUOX1, CSNK1G1, ZFAND6, SCAND2P, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, LRRC49, PAQR5, CKMT1A, DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZSCAN2, ZWILCH, FLJ10038, UACA, HAUS2, IMP3, LARP6, MNS1, DNAJA4, GOLGA6B, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, B2M, PSMA4, C15orf39, THAP10, PARP6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DTWD1, FAM219B, ADAMTSL3, CEMIP, STARD9, ALPK3, ISLR2, IGDCC4, PTPN9, SQRDL, ABHD17C, BBS4, RAB27A, RASGRF1, MESDC1, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, BCL2A1, PPCDC, CELF6, RORA, RPL4, RPLP1, SERINC4, STRA6, LOC642423, GOLGA6L4, ZNF106, KLHL25, CPEB1, EIF3J-AS1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, IQCH, ISL2, RFX7, EFTUD1P1, GOLGA6C, GOLGA6D, SLC12A1, BNIP2, SNX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 HSP90AB4P, SORD, SCARNA15, SCARNA14, FBXO22-AS1, MIR549A, MIR626, MIR627, MIR628, MIR629, MIR630, MIR631, TCF12, TLE3, TP53BP1, TPM1, PIN4P1, OIP5-AS1, LOC729739, ANKRD34C-AS1, TYRO3, TYRO3P, CA12, SLC30A4, SPATA5L1, NOX5, EFL1, NEIL1, ICE2, AAGAB, LMAN1L, SLTM, PEAK1, SNX22, THSD4, ATP8B4, WDR76, TMEM62, SEMA6D, ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, SPG11, ELL3, PLEKHO2, WDR61, CD276, STARD5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 AP3B2, ANP32A, POLR2M, VWA9, LINC00597, CAPN3, ADPGK, APH1B, FAM103A1, TLN2, FAM96A, MEX3B, C15orf48, MEGF11, SEMA7A, CILP, SPPL2A, LINGO1, WDR73, CGNL1, FRMD5, UBL7, PIAS1, EIF3J, JMJD7-PLA2G4B, RAB11A, SNAP23, ALDH1A2, HERC1, PSTPIP1, SHF, DUOXA1, USP8, CCNB2, LOC91450, SLC28A2, SLC28A1, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, UBE2Q2, COPS2, TRIP4, TGM5, COX5A, STOML1, HOMER2, PIGB, KIF23, IGDCC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZNF592, PPIP5K1, SECISBP2L, KIAA0101, LCMT2, ARNT2, USP3) 0.355907803871442 761 0.0712112380988079 0.998512026463878 41740 0.365203227066231 3 2 1 -6.90795031132353 LTS-037 NA NA NA NA LTS-037 chr15 86311768 89007972 2696205 * c(MIR1276, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, AGBL1-AS1) 0.349804263014483 31 0.0637341926427876 1.12038671062233 697 0.340934074913893 3 2 1 -6.84909060603107 LTS-037 chr15 89007973 102516492 13508520 * c(FAM138E, LINC00930, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, LOC100507472, C15orf38-AP3S2, MIR3529, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, ADAMTS17, ACAN, DNM1P46, CERS3, ALDH1A3, FES, CHSY1, SYNM, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, OR4F4, SLCO3A1, LINC00928, FAM169B, ANPEP, IDH2, ZNF774, NA NA NA NA NA NA NA NA NA LTS-037 IGF1R, ARPIN, ISG20, KIF7, ZNF710, HDDC3, WASH3P, SPATA41, GDPGP1, OR4F6, OR4F15, OR4F13P, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MEF2A, MFGE8, TTLL13P, LOC440311, PRKXP1, FURIN, PCSK6, NGRN, RHCG, PLIN1, POLG, DET1, LINS1, FANCI, MCTP2, SELENOS, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, AEN, CRTC3, TTC23, MRPS11, SNRPA1, NR2F2, HSP90B2P, ASB9P1, LRRK1, TM2D3, ST8SIA2, PEX11A, IQGAP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.356745561914967 217 0.0729130672068936 1.00944917634536 8669 0.41883949633254 3 2 1 -6.75067119368497 LTS-037 NA NA NA NA LTS-037 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.162 1 NA NA NA NA NA LTS-037 chr16 81704 81779 76 * character(0) 0.238 1 NA 0.127 1 NA NA NA NA NA LTS-037 chr16 81780 1278424 1196645 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, TPSG1, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, PRR25, C1QTNF8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, PDIA2, LMF1, FAM173A, CAPN15, SSTR5, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, NA NA NA NA NA NA NA NA NA LTS-037 MCRIP2, RGS11, CACNA1H, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.111732230008864 170 0.0384098276813767 0.721031911463683 3688 0.208544833724695 2 2 0 -6.75185137635421 LTS-037 NA NA NA NA LTS-037 chr16 1278425 1278744 320 * TPSB2 0.181 1 NA 0.968169237743629 7 0.34294168600507 3 3 0 -5.76441609928918 LTS-037 chr16 1278745 1291800 13056 * c(TPSB2, TPSAB1) 0.304857375389074 9 0.0689053295793906 0.518320206542622 41 0.285445618672826 4 3 1 -6.87775112470021 LTS-037 chr16 1291801 1306355 14555 * c(TPSD1, TPSAB1) 0.152 1 NA 0.59185530912304 13 0.265531904500556 2 2 0 -5.77078441189305 LTS-037 chr16 1306356 2672816 1366461 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, TSR3, CLCN7, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, IGFALS, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, CCDC154, HS3ST6, NA NA NA NA NA NA NA NA NA LTS-037 UNKL, LINC00254, ABCA17P, LOC652276, MRPS34, SNORA78, TSC2, UBE2I, SNHG9, CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, GNPTG, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.126706669028228 109 0.0438816869147391 0.716843332968238 4501 0.199239161049137 2 2 0 -6.80094978678215 LTS-037 NA NA NA NA LTS-037 chr16 2672817 2692190 19374 * c(FLJ42627, LOC652276) NA 0 NA 0.334 1 NA NA NA NA NA LTS-037 chr16 2692191 2732840 40650 * c(ERVK13-1, KCTD5, FLJ42627) NA 0 NA 0.435924230998577 73 0.101507788125977 1 NA NA -5.76955582419034 LTS-037 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.605 1 NA NA NA NA NA LTS-037 chr16 2747831 4043405 1295575 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, ZNF263, TRAP1, PRSS21, FLYWCH2, ADCY9, ZG16B, PRSS30P, PAQR4, CREBBP, ZNF597, BICDL2, DNASE1, NLRC3, CLUAP1, SRRM2, PRSS33, OR1F2P, LINC00514, LINC00921, PRSS41, MEFV, OR1F1, OR2C1, TNFRSF12A, KCTD5, ZSCAN32, HCFC1R1, PRSS22, MMP25, C16orf90, TCEB2, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, SLX4, ZSCAN10, CLDN6, CLDN9, NA NA NA NA NA NA NA NA NA LTS-037 PKMYT1, TIGD7, IL32) 0.128575960744086 78 0.057532217443412 0.725584090719057 2960 0.206118989525963 2 2 0 -6.77598510154031 LTS-037 NA NA NA NA LTS-037 chr16 4043406 4564060 520655 * c(LINC01569, CORO7-PAM16, VASN, ADCY9, CDIP1, HMOX2, PAM16, NMRAL1, SRL, TFAP4, CORO7, GLIS2, DNAJA3) 0.0880040817098112 21 0.0407886538845582 1.04174904324923 659 0.27216484808896 3 3 0 -6.74248844805333 LTS-037 chr16 4564061 12662499 8098439 * c(MIR548X, NAGPA-AS1, RMI2, ANKS3, UBALD1, SEPT12, TEKT5, C16orf89, C16orf71, ABAT, EEF2KMT, EMP2, CLEC16A, MGRN1, CARHSP1, TMEM186, ZNF500, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, UBN1, CDIP1, C16orf96, BCAR4, CIITA, SMIM22, NUBP1, TXNDC11, NAGPA, PMM2, RBFOX1, PPL, ALG1, PRM1, PRM2, PRM3, TNFRSF17, TNP2, TVP23A, USP7, METTL22, ROGDI, ATF7IP2, SNN, NUDT16L1, GLYR1, SOCS1, SNX29, NA NA NA NA NA NA NA NA NA LTS-037 LITAF, SEC14L5) 0.144944542086101 96 0.0759943095745945 0.729942896115448 4228 0.219243550282782 2 2 0 -6.85460734346566 LTS-037 NA NA NA NA LTS-037 chr16 12662500 12757187 94688 * c(CPPED1, SNX29) NA 0 NA 0.978 1 NA NA NA NA NA LTS-037 chr16 12757188 15069171 2311984 * c(MIR365A, MIR4718, ERCC4, PDXDC1, NOMO1, PARN, BFAR, CPPED1, MIR193B, MKL2, NPIPA3, SHISA9, ABCC6P2, PLA2G10, NPIPA1) 0.0918098316003535 15 0.0234940722006941 1.02186268684257 623 0.38604762954469 3 3 0 -6.8153887283527 LTS-037 chr16 15069172 15082015 12844 * PDXDC1 NA 0 NA 1.24 1 NA NA NA NA NA LTS-037 chr16 15082016 15123936 41921 * PDXDC1 0.392662974236631 2 0.0473761543394987 1.36976771868878 99 0.31762050435487 5 3 2 -6.78236592750582 LTS-037 chr16 15123937 15125635 1699 * PDXDC1 NA 0 NA 0.856 1 NA NA NA NA NA LTS-037 chr16 15125636 17564328 2438693 * c(NPIPA5, MIR3179-2, MIR3180-4, NTAN1, FOPNL, PDXDC1, MPV17L, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, RRN3, NDE1, MIR484, XYLT1, C16orf45, KIAA0430) 0.121453759998015 19 0.0393081989275008 1.0244488961362 1439 0.272470035174378 3 3 0 -7.25705847489164 LTS-037 chr16 17564329 28608421 11044093 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, LCMT1-AS2, SNX29P1, COQ7, IGSF6, CACNG3, CDR2, ERN2, ERI2, SGF29, SLC5A11, ACSM1, CLN3, ACSM2A, DCUN1D3, IQCK, GPR139, EARS2, CRYM, VWA3A, OTOA, GSG1L, ITPRIPL2, C16orf82, NSMCE1, PDILT, SMG1, GGA2, NPIPB3, ARL6IP1, XPO6, KIAA0556, IL27, PDZD9, ANKS4B, NUPR1, TNRC6A, GP2, NOMO2, IL21R-AS1, GTF3C1, EEF2K, ZKSCAN2, AQP8, ACSM2B, IL4R, SLC7A5P2, SBK1, NA NA NA NA NA NA NA NA NA LTS-037 KNOP1, CRYM-AS1, FLJ21408, NDUFAB1, IL21R, METTL9, LCMT1, GDE1, GPRC5B, SYT17, PLK1, ACSM5, ARHGAP17, LOC554206, DNAH3, THUMPD1, POLR3E, PRKCB, APOBR, UBFD1, C16orf62, TMEM159, LYRM1, USP31, RBBP6, RPS15A, ACSM3, SCNN1B, SCNN1G, CHP2, SMG1P1, XYLT1, ABCC6P1, LOC653786, SULT1A2, MIR548D2, CLEC19A, RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, PALB2, KDM8, TMC5, TMC7, LOC81691, DCTN5, COG7, CCP110, HS3ST4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 HS3ST2) 0.124822884637784 178 0.0555429554576568 0.735520964414837 8264 0.219667980464598 2 2 0 -6.76441941768176 LTS-037 NA NA NA NA LTS-037 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.461 1 NA NA NA NA NA LTS-037 chr16 28616944 28631399 14456 * SULT1A1 0.138328443536702 13 0.0516051329190202 0.354192814171771 58 0.131984188726549 2 2 0 -7.11409778869285 LTS-037 chr16 28631400 28634378 2979 * SULT1A1 NA 0 NA 0.706 1 NA NA NA NA NA LTS-037 chr16 28634379 31770723 3136345 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, NA NA NA NA NA NA NA NA NA LTS-037 ITGAL, ITGAM, ITGAX, KIF22, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A1, SULT1A3, TBX6, TGFB1I1, TUFM, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, ARMC5, RABEP2, HSD3B7, SLC7A5P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.117721226967353 51 0.0315772566454862 0.731091523725043 6541 0.179881873237823 2 2 0 -6.75169041944673 LTS-037 NA NA NA NA LTS-037 chr16 31770724 31993381 222658 * c(ZNF267, ZNF720) NA 0 NA 0.676126516582167 119 0.127366875185267 2 NA NA -5.83610620786425 LTS-037 chr16 31993382 32001760 8379 * character(0) NA 0 NA 1.069 1 NA NA NA NA NA LTS-037 chr16 32001761 32013455 11695 * character(0) 0.247 1 NA 1.05319012404237 3 0.137524543264102 3 3 0 -5.76461731550679 LTS-037 chr16 32013456 33630522 1617067 * c(SLC6A10P, LOC390705, NA, TP53TG3D) 0.330283287607372 21 0.100157185986638 0.982036953743044 145 0.434038816969192 3 2 1 -6.79726437040889 LTS-037 chr16 33630523 33647072 16550 * character(0) NA 0 NA 0.149 1 NA NA NA NA NA LTS-037 chr16 33647073 33961628 314556 * LINC00273 0.275564275277714 29 0.139015902623642 0.520236787375444 128 0.42325652803136 1 1 0 -6.98485125209127 LTS-037 chr16 33961629 33961691 63 * LINC00273 0.285458164514936 7 0.0514189144372454 0.273226007218968 7 0.0868389313614579 4 3 1 -6.74718468411335 LTS-037 chr16 33961692 33961702 11 * LINC00273 0.46 1 NA 0.255 1 NA NA NA NA NA LTS-037 chr16 33961703 33962369 667 * LINC00273 0.397511527588279 42 0.0744200535273598 0.2359002147061 51 0.287587270982866 5 3 2 -6.7574854834394 LTS-037 chr16 33962370 33962378 9 * LINC00273 NA 0 NA 0.723 1 NA NA NA NA NA LTS-037 chr16 33962379 34681938 719560 * c(LINC01566, UBE2MP1, LINC00273) 0.404407277166315 5 0.135945945139971 0.671326334478766 121 0.21030185147255 2 1 1 -6.86408813618534 LTS-037 chr16 34681939 34682380 442 * character(0) NA 0 NA 0.673244756676171 9 0.077187722109442 2 NA NA -5.76483782968023 LTS-037 chr16 46508169 46532041 23873 * ANKRD26P1 0 1 NA 0.696416415729475 21 0.448586658825461 2 2 0 -5.76470439563004 LTS-037 chr16 46532042 68172734 21640693 * c(CDH5, MIR3935, LINC00919, LINC00920, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NUDT21, ADCY7, CMTM1, NRN1L, CMTM3, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, CYLD, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, CES3, ARL2BP, ORC6, EDC4, CNEP1R1, PLEKHG4, NA NA NA NA NA NA NA NA NA LTS-037 DKFZP434H168, LRRC29, AMFR, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, MT1DP, HSD11B2, HSF4, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, FAM96B, TPPP3, CES1P1, PHKB, POLR2C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DUS2, LPCAT2, HEATR3, SLC38A7, OGFOD1, LRRC36, FBXL8, DOK4, VPS35, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNORA46, SNORA50A, TK2, CA7, FTO, IRX6, IRX3, FAM65A, USB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ELMO3, SHCBP1, SETD6, FAM192A, CENPT, CHD9, C16orf70, ITFG1, GFOD2, NETO2, LONP2, ENKD1, NLRC5, DRC7, CAPNS2, MT4, GPT2, B3GNT9, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NOL3, RSPRY1, ATP6V0D1, MYLK3, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1) 0.115345219386582 219 0.0370175128697095 0.737052275673532 13925 0.205330203847784 2 2 0 -6.75075194786619 LTS-037 NA NA NA NA LTS-037 chr16 68172735 68191785 19051 * NFATC3 NA 0 NA 1.488 1 NA NA NA NA NA LTS-037 chr16 68191786 68294961 103176 * c(PLA2G15, NFATC3, ESRP2) NA 0 NA 1.60589379483066 299 0.384383806308163 5 NA NA -5.76441497350374 LTS-037 chr16 68294962 68308658 13697 * SLC7A6 NA 0 NA 1.094 1 NA NA NA NA NA LTS-037 chr16 68308659 68598665 290007 * c(ZFP90, PRMT7, SMPD3, SLC7A6OS, SLC7A6) 0.105430095755208 8 0.0354753435501335 1.05971546674987 439 7.3209078176596 12 11 1 -6.74041485777702 LTS-037 chr16 68598666 68678753 80088 * c(CDH3, ZFP90) NA 0 NA 0.627 1 NA NA NA NA NA LTS-037 chr16 68678754 69974546 1295793 * c(CDH3, MIR1538, NFAT5, WWP2, TMED6, NQO1, VPS4A, NOB1, HAS3, MIR140, NIP7, CHTF8, PDF, SNTB2, TERF2, TANGO6, CYB5B, COG8, UTP4, CDH1) 0.117455155186814 23 0.061802471265682 0.720987576618218 1641 0.205415930182412 2 2 0 -6.75007839395215 LTS-037 chr16 69974547 69974659 113 * WWP2 0.243 1 NA 0.531812739081683 3 0.345664577300018 1 1 0 -5.76442315915482 LTS-037 chr16 69974660 70161298 186639 * c(MIR1972-1, WWP2, PDXDC2P, CLEC18C, CLEC18A, PDPR) 0.135 1 NA 0.684644523570753 100 0.205905005065713 2 2 0 -5.78183772397244 LTS-037 chr16 70161299 70162672 1374 * c(CLEC18C, PDPR) NA 0 NA 1.187 1 NA NA NA NA NA LTS-037 chr16 70162673 70191029 28357 * c(CLEC18C, PDPR) 0.342582245097414 8 0.102824312716956 1.25066317073539 103 0.380475750459352 6 4 2 -6.75446090290676 LTS-037 chr16 70191030 70191100 71 * c(CLEC18C, PDPR) NA 0 NA 1.74075580127346 3 0.00923760430703402 6 NA NA -5.76758497445841 LTS-037 chr16 70191101 70208038 16938 * c(CLEC18C, PDPR) NA 0 NA 0.553 1 NA NA NA NA NA LTS-037 chr16 70208039 70368909 160871 * c(SMG1P7, LOC100506083, DDX19B, EXOSC6, AARS, CLEC18C, DDX19A) 0.147 1 NA 0.709043297200972 243 0.138240153722969 2 2 0 -5.77523194570481 LTS-037 chr16 70368910 70808234 439325 * c(SNORD111B, VAC14-AS1, LOC100506083, IL34, FUK, SF3B3, COG4, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.137897490536526 9 0.100525010707673 0.757267794051029 905 0.199154036488948 2 2 0 -6.76642888898459 LTS-037 chr16 70808235 70869690 61456 * c(HYDIN, VAC14) NA 0 NA 0.767370498679956 103 0.184168345897679 2 NA NA -5.76557400021045 LTS-037 chr16 70869691 70871572 1882 * HYDIN NA 0 NA 0.961 1 NA NA NA NA NA LTS-037 chr16 70871573 70884524 12952 * HYDIN 0.477 1 NA 0.919085888271816 19 0.127807398041553 3 3 0 -5.77043199131403 LTS-037 chr16 70884525 71167220 282696 * HYDIN 0.43715883689049 81 0.0521909953919256 0.863629489022406 527 0.1881919956145 2 1 1 -6.84026190157081 LTS-037 chr16 71167221 71209748 42528 * HYDIN NA 0 NA 0.817875037090964 21 0.112533762129628 2 NA NA -5.7831004879139 LTS-037 chr16 71209749 71212772 3024 * HYDIN NA 0 NA 0.722 1 NA NA NA NA NA LTS-037 chr16 71212773 71411636 198864 * c(HYDIN, CMTR2, CALB2) 0.11 1 NA 0.749684647144393 119 0.141082016751925 2 2 0 -5.76494044934322 LTS-037 chr16 71411637 74385289 2973653 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, PHLPP2, HCCAT5, LOC283922, HP, HPR, ATXN1L, PKD1L3, ZFHX3, TXNL4B, ZNF821, PSMD7, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.139051010967586 57 0.0619844349449005 0.745349667527432 2171 0.224077189703996 2 2 0 -6.82225230040528 LTS-037 chr16 74385290 74385310 21 * LOC283922 NA 0 NA 0.73 1 NA NA NA NA NA LTS-037 chr16 74385311 74452124 66814 * c(LOC283922, CLEC18B) 0.353730894178164 4 0.12991118761164 1.23780864742911 39 0.384745929802156 3 2 1 -6.74380555999174 LTS-037 chr16 74452125 74485832 33708 * c(GLG1, CLEC18B) NA 0 NA 0.629 1 NA NA NA NA NA LTS-037 chr16 74485833 90161231 15675399 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, NA NA NA NA NA NA NA NA NA LTS-037 MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 BANP, RFWD3, ZDHHC7, CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, FA2H, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.119232245760741 297 0.0468802340785149 0.726679786226208 10659 0.311085257244599 2 2 0 -6.78351167101632 LTS-037 NA NA NA NA LTS-037 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.149 1 NA NA NA NA NA LTS-037 chr17 6004 6115 112 * DOC2B 0.15 1 NA 0.370668160840295 3 0.325401802904245 1 1 0 -5.76443755797064 LTS-037 chr17 6116 2597734 2591619 * c(DBIL5P, PITPNA-AS1, MIR3183, LOC100506388, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, CRK, RTN4RL1, DPH1, CLUH, SMG6, LOC284009, TUSC5, ABR, TIMM22, HIC1, RFLNB, C17orf97, MIR132, MIR212, MIR22, MNT, MYO1C, PAFAH1B1, GEMIN4, GLOD4, SERPINF1, INPP5K, PITPNA, SERPINF2, MRM3, VPS53, TSR1, RPA1, SRR, NXN, SNORD91A, SNORD91B, BHLHA9, TLCD2, YWHAE, METTL16, FAM57A, RILP, DOC2B, MIR22HG, SCARF1, RPH3AL, SGSM2 NA NA NA NA NA NA NA NA NA LTS-037 ) 0.129523193006723 103 0.060428829558769 0.726921922284561 3327 0.315340582531506 2 2 0 -6.77450332672453 LTS-037 NA NA NA NA LTS-037 chr17 2597735 2598639 905 * CLUH 0.168 1 NA 0.65380937177524 15 0.1934101735641 2 2 0 -5.76464558153465 LTS-037 chr17 2598640 3143983 545344 * c(MIR1253, RAP1GAP2, CLUH, OR1A2, OR1D2, OR1D4, OR1A1, OR1D5, OR1G1) 0.372905269135534 9 0.151986019093863 0.760919358233014 305 0.228472178163985 2 1 1 -6.83975510119805 LTS-037 chr17 3143984 3406464 262481 * c(OR3A4P, ASPA, OR3A1, OR3A2, OR1D4, OR1E1, OR1E2, OR3A3, SPATA22) 0.098 1 NA 0.742986439466337 275 0.17042026455015 2 2 0 -5.76441114264383 LTS-037 chr17 3406465 21117589 17711125 * c(MIR744, LOC100128288, FAM106CP, C17orf107, LOC100130950, LOC100287072, LINC00675, MIR1288, MIR1180, MIR4314, NA, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, EPN2-AS1, COX10-AS1, EPN2-IT1, TMEM220-AS1, LOC101559451, PEMT, CLEC10A, MYBBP1A, FBXW10, TRIM16, RAI1, KIF1C, GRAP, CHD3, AKAP10, SAT2, GABARAP, CHRNB1, NA NA NA NA NA NA NA NA NA LTS-037 CHRNE, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CYB5D2, ZFP3, GGT6, SPNS2, LRRC75A-AS1, ZSWIM7, MIEF2, SLC5A10, COX10, ADORA2B, CLDN7, SMCR5, SMCR8, NA, TOM1L2, DNAH2, SLC47A2, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, TRIM16L, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, USP32P1, DLG4, DNAH9, DRG2, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, CENPV, FLCN, PLD6, SLC16A13, C17orf74, SPNS3, ENO3, ALDH3A1, USP32P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ALDH3A2, FGF11, NLRP1, ARHGEF15, EPN2, FOXO3B, CAMTA2, KDM6B, FLII, ZZEF1, MPRIP, WSCD1, USP22, CTDNEP1, TNFRSF13B, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TBC1D28, TMEM256, BCL6B, CDRT15L2, DHRS7B, RNF167, SENP3, SNORA67, SNORD49A, PELP1, B9D1, GP1BA, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, CCDC144B, SLC13A5, TMEM102, LGALS9B, GPS2, RANGRF, GUCY2D, TAX1BP3, LOC339166, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TMEM95, CCDC144NL, KRT17P5, SMTNL2, CCDC144CP, TBC1D26, ITGAE, ACADVL, CDRT1, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, LRRC75A, SLC25A35, LLGL1, MED11, KRT16P2, GRAPL, TNFSF12-TNFSF13, ARRB2, MEIS3P1, MFAP4, ASGR1, ASGR2, MIR324, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, ATP1B2, ATP2A3, NUP88, P2RX1, P2RX5, MINK1, MED31, DERL2, TVP23B, YBX2, MYO15A, TRPV2, ANKFY1, RASD1, PER1, PFAS, PFN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PLD2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, ALKBH5, TTC19, SLC52A1, MED9, WRAP53, SLC47A1, NCBP3, MAPK7, PRPSAP2, DHX33, PSMB6, NT5M, ADPRM, PLSCR3, ZNF286A, ZNF287, MIR497, ZNF624, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, ELAC2, RPL26, SCO1, MAP2K4, SLC35G6, RNF222, PIRT, CDRT15P2, FAM83G, KRT16P3, EVPLL, TEKT3, SHBG, SHMT1, SLC2A4, SNORA48, SNORD10, LGALS9C, SOX15, SREBF1, SCARNA21, SNORA59A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 VAMP2, SNORD49B, SNORD65, MIR33B, C1QBP, TOP3A, TP53, LOC728392, KRT16P1, ZNF286B, UBB, UBE2G1, TRPV1, ZNF18, RNF112, ZNF232, MIS12, GID4, PHF23, FAM106A, CTC1, NDEL1, PITPNM3, DRC3, EMC6, TEKT1, GSG2, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, GAS7, COPS3, TNK1, MYH13, TNFSF13, TNFSF12, TMEM11, TM4SF5, USP6, RABEP1, ATPAF2, KCNAB3, AURKB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TMEM88, SPECC1, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, PIGL, FXR2, MPDU1, SPAG7, NCOR1, CD68, ULK2, CCDC144A, ACAP1, KIAA0753, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.129486995231409 519 0.0685038530081968 0.73583029820869 22421 0.205757653128789 2 2 0 -6.78100988802496 LTS-037 NA NA NA NA LTS-037 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.493 1 NA 0.588106738154696 33 0.185770248498711 2 2 0 -5.83659305704123 LTS-037 chr17 21194770 21318552 123783 * c(KCNJ12, MAP2K3) 0.402805109658988 72 0.104276668678439 0.655003313216479 160 0.230442275067672 2 1 1 -6.8167678284927 LTS-037 chr17 21318553 21318555 3 * KCNJ12 0.22 1 NA 0.554 1 NA NA NA NA NA LTS-037 chr17 21318556 22066835 748280 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.309054137221101 53 0.0891085629678455 0.716194691480711 291 0.230543980323435 2 1 1 -7.77208170736415 LTS-037 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.873 1 NA NA NA NA NA LTS-037 chr17 25620838 25753033 132196 * c(MIR4522, WSB1, TBC1D3P5) 0.078 1 NA 0.718084394111341 73 0.154708679441952 2 2 0 -5.76816229797066 LTS-037 chr17 25753034 44172146 18419113 * c(MIR365B, LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, MIR2909, MIR3184, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, SPAG5-AS1, AA06, SLFN12L, KRTAP9-6, GJC1, RAD51L3-RFFL, KRTAP29-1, MIR4523, MIR4728, MIR4726, MIR4734, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4727, MIR4725, MIR5010, NARR, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NA NA NA NA NA NA NA NA NA LTS-037 NBR2, RAMP2, VAT1, P3H4, HEXIM1, SPAG5, CCT6B, C1QL1, RUNDC3A, STARD3, DDX52, DUSP14, SYNRG, PLCD3, SLC46A1, TMEM106A, LRRC37B, NT5C3B, ABHD15, TLCD1, RFFL, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, GJD3, KRT222, KRT40, CNP, CPD, CRYBA1, CSF3, C17orf50, SLFN13, SLC35G3, UNC45B, CD300LG, KIF18B, RUNDC1, TMEM199, PROCA1, DHRS13, LINC00974, LRRC37BP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 WIPF2, KRT25, TMEM99, SLFN5, NAGS, FAM134C, RHBDL3, KRT28, AP2B1, DHX8, DUSP3, KRT24, ZNF385C, LYRM9, RDM1, ERBB2, ETV4, EVI2A, EVI2B, EZH1, CASC3, IKZF3, ALDOC, SARM1, GPATCH8, FLOT2, KCNH4, SUZ12, FAM215A, PPY2P, PYY2, GAS2L2, GAST, FZD2, G6PC, HEATR9, KRT23, TMEM98, POLDIP2, TBC1D29, ERAL1, KAT2A, AATF, GFAP, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TUBG2, TMEM97, CCR10, C17orf105, FAM171A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MEIOC, KRT18P55, NEK8, PIGW, C17orf78, YWHAEP7, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, GIT1, PSMC3IP, HCRT, SOCS7, ACACA, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, KRT27, SLFN14, LRRC37A11P, STAC2, IFI35, CCL15-CCL14, IGFBP4, KRT26, ITGA2B, JUP, EFCAB5, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, TMIGD1, CCL4L1, C17orf98, LINC00671, CCDC103, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, LGALS9, LHX1, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, NBR1, TBC1D3B, TBC1D3C, CCL3L3, ADAM11, MEOX1, MLLT6, MPP2, MPP3, TBC1D3P5, SUZ12P1, LOC440434, GPR179, MYO1D, NAGLU, ACLY, NEUROD2, NF1, NMT1, NOS2, FBXO47, MIR423, OMG, ARGFXP2, DPRXP4, SOST, RAPGEFL1, PIPOX, CRLF3, SLC25A39, NLK, HIGD1B, CDK12, PEX12, ATP6V0A1, PNMT, KRT20, NLE1, MED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FNDC8, CWC25, SLFN12, KLHL11, RHOT1, COPRS, PPY, FAM222B, ADAP2, UTP6, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, ARHGAP23, PHF12, RAB5C, RAD51D, RARA, FKBP10, RPL19, RPL23A, RPL27, SNORA21, CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC4A1, WNK4, SLC6A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 KRTAP4-11, NA, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, SUPT6H, TADA2A, SNORD7, HNF1B, MIR632, MLX, THRA, TNFAIP1, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, TBC1D3H, KRTAP2-3, UBTF, VTN, FMNL1, PCGF2, ZNF207, CACNB1, C17orf53, TMUB2, DHX58, MMP28, DHRS11, TEFM, ACBD4, DCAKD, GGNBP2, ATAD5, MRM1, PLEKHH3, DBF4B, MYO19, COASY, SRCIN1, AARSD1, TAF15, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 KRTAP4-6, KRTAP2-1, TTC25, KRTAP4-12, RAB34, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, NSRP1, PPP1R1B, RNF135, MIEN1, MRPL45, VPS25, TMEM101, RAB11FIP4, GHDC, FOXN1, KRTAP4-4, CORO6, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, SSH2, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, KSR1, CDK5R1, HAP1, MAP3K14, TP53I13, IFT20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SLC13A2, AOC4P, UNC119, ZNF830, SLFN11, RASL10B, TIAF1, G6PC3, ASB16, PGAP3, ZNHIT3, EFTUD2, RPL23, PIGS, HSPB9, ORMDL3, GOSR1, NR1D1, TRAF4, KIAA0100, MED24, CDC6) 0.128651472520629 464 0.0602351125737549 0.724883998325043 26960 0.217732817902109 2 2 0 -6.89742844089555 LTS-037 NA NA NA NA LTS-037 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.487 1 NA NA NA NA NA LTS-037 chr17 44248158 44336993 88836 * character(0) 0.156 1 NA 0.454607365482761 48 0.0809991435687147 1 1 0 -5.76458802994248 LTS-037 chr17 44336994 44337175 182 * character(0) NA 0 NA 0.349 1 NA NA NA NA NA LTS-037 chr17 44337176 44770439 433264 * character(0) NA 0 NA 0.283823266653808 49 0.0926592488344138 1 NA NA -9.33201590159159 LTS-037 chr17 44770440 44771837 1398 * character(0) NA 0 NA 0.659 1 NA NA NA NA NA LTS-037 chr17 44771838 45197317 425480 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.147278543502539 2 0.0190918830920368 0.691305085930049 254 0.179245684829993 2 2 0 -8.12778502886865 LTS-037 chr17 45197318 45214482 17165 * CDC27 0.379 1 NA 0.688792765026786 45 0.124231089652967 2 2 0 -5.76819191959844 LTS-037 chr17 45214483 45249372 34890 * CDC27 0.306584841473751 11 0.0869630015372264 0.616859549531235 73 0.231821604015415 4 3 1 -6.99383376094121 LTS-037 chr17 45249373 45258971 9599 * CDC27 0 1 NA 0.592903413382229 9 0.276830172568751 2 2 0 -5.76821925385257 LTS-037 chr17 45258972 46423432 1164461 * c(MIR1203, CBX1, OSBPL7, EFCAB13, MRPL10, SNX11, TBX21, ITGB3, KPNB1, MIR152, MYL4, NFE2L1, COPZ2, PNPO, MRPL45P2, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.11575945623754 35 0.0526172639975535 0.712726045208217 1466 0.207290237073542 2 2 0 -6.76055115255955 LTS-037 chr17 46423433 46441051 17619 * SKAP1 NA 0 NA 1.247 1 NA NA NA NA NA LTS-037 chr17 46441052 46799242 358191 * c(HOXB-AS1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB-AS3, MIR10A, MIR196A1, PRAC1, SKAP1) 0.0549101909973399 14 0.0257455853465243 1.15642382648537 576 0.349375735637794 4 4 0 -6.85269614494247 LTS-037 chr17 46799243 80363278 33564036 * c(SNORA38B, LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, TOM1L1, MIR4316, MIR3065, MIR3186, MIR3185, LINC00674, LINC00673, MIR3614, MIR3678, MIR3615, C17orf112, TSPOAP1-AS1, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4729, MIR4737, MIR4736, MIR4738, MIR4740, MIR4524A, MIR4730, MIR3064, MIR5047, CEP295NL, MIR4524B, LOC100996291, DNAH17-AS1, TOB1, CDK3, ALYREF, NA NA NA NA NA NA NA NA NA LTS-037 SLC35B1, DCAF7, CALCOCO2, ABCA10, ABCA9, ABCA8, BAIAP2, ATP5H, HOXB13, APPBP2, ST6GALNAC2, IGF2BP1, GNA13, SEPT9, CD300C, CHAD, TLK2, KAT7, POLG2, NXPH3, SNF8, CD300A, TMC6, DDX42, CYGB, RNF157, C1QTNF1, PPP1R27, FTSJ3, CLTC, METTL23, HSF5, OR4D2, MSI2, SLC38A10, CANT1, USH1G, CD300LB, KIF19, C17orf64, WFIKKN2, FLJ40194, B4GALNT2, TBC1D16, AFMID, COL1A1, COX11, DYNLL2, CSH1, CSH2, CSHL1, CSNK1D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, TCAM1P, EFCAB3, SLC25A10, LOC146880, EME1, NOTUM, TMC8, AANAT, CYB561, ANKFN1, MARCH10, TMEM92, PHOSPHO1, ACE, DDX5, DLX3, DLX4, CEP112, SAMD14, CENPX, LRRC45, SLC39A11, AMZ2P1, TRIM65, UNC13D, ERN1, EVPL, BPTF, FASN, FDXR, ZNF652, PPM1E, ARSG, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, ABCA6, ABCA5, KCTD2, MMD, WBP2, CDC42EP4, MTVR2, STXBP4, CACNA1G-AS1, GAA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TAC4, MYADML2, NPB, FSCN2, GALK1, NOL11, TANC2, NAT9, PITPNC1, GCGR, OR4D1, GH1, GH2, GIP, CACNG5, CACNG4, GNGT2, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, C17orf58, MILR1, TTLL6, LOC284080, C17orf47, SLC26A11, ENDOV, GDPD1, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, HLF, RAB37, BIRC5, ICAM2, METTL2A, C17orf67, ENPP7, OXLD1, CCDC137, ARL16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MRPL58, CD300E, NACA2, OTOP3, SKA2, MCRIP1, APOH, GPR142, ZACN, PRAC2, ITGA3, ITGB4, HILS1, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, TOB1-AS1, KCNJ2-AS1, LINC00511, LOC400620, FLJ45079, TEX19, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAFG, MAP3K3, MPO, MXRA7, TBC1D3P2, PLEKHM1P1, LOC440461, BAIAP2-AS1, MIR338, TRIM37, NGFR, NME1, NME2, NPTX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 P4HB, ACOX1, MRPS7, UTP18, RNFT1, HN1, TUBD1, DCXR, TACO1, ABI3, MRPL27, AMZ2, PDE6G, ANAPC11, SIRT7, ATP5G1, PDK2, MRPS23, PTRH2, LUC7L3, PECAM1, PHB, SEPT4, SDK2, FAM20A, MBTD1, BCAS3, TMEM104, RNF43, MKS1, LINC00483, C17orf80, CCDC40, EPN3, WIPI1, SMG8, TMEM100, RSAD1, LRRC59, MSX2P1, NPLOC4, PRKAR1A, PRR11, PRKCA, ST6GALNAC1, TEX2, GPRC5C, MAP2K6, TEX14, PRPSAP1, CA10, CCDC47, PSMC5, PSMD12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CBX8, MIF4GD, INTS2, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, PCTP, RAC3, RAD51C, SCPEP1, RFNG, SLC25A19, RPL38, MRPL12, RPS6KB1, SCN4A, UBE2O, HEATR6, SEC14L1, SECTM1, DUS1L, XYLT2, SRSF1, SRSF2, CPSF4L, SMIM5, SGCA, DNAI2, SGSH, WFDC21P, SMURF2, ENGASE, SPATA20, MRPL38, UBE2Z, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SNHG20, SMARCD2, SUMO2, SOX9, SRP68, SSTR2, SCARNA20, SCARNA16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNORA50C, SNORD1A, SNORD1B, SNORD1C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, MIR636, TIMP2, TK1, ACTG1, MIR657, FLJ45513, LOC729683, CA4, PRCD, MIR454, TRIM25, VEZF1, CACNG1, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, DHX40, OGFOD3, NUP85, MYO15B, ACSF2, FAAP100, LIMD2, KCNH6, FAM117A, COIL, AKAP1, VMP1, EPX, AXIN2, TSPAN10, BRIP1, SPOP, MYCBPAP, QRICH2, PRAC1, KIF2B, USP32, PPP1R9B, CBX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 FAM104A, PPM1D, MGC16275, DGKE, FBF1, CBX4, UNK, DNAH17, ABCC3, RGS9, GALR2, SPHK1, CACNA1G, SOCS3, SPAG9, CEP95, MTMR4, TRIM47, SLC16A6, SLC16A5, SLC16A3, ANKRD40, SYNGR2, HGS, STRADA, PRR29, CD7, NOG, TSPOAP1, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, TBX4, AATK, CD79B, TMEM94, EIF4A3, MRC2, HELZ, MED13) 0.119925367112692 670 0.0488977121635004 0.72313124282487 29653 0.283703794163824 2 2 0 -6.9117414789828 LTS-037 NA NA NA NA LTS-037 chr17 80363279 80386556 23278 * c(HEXDC, OGFOD3) NA 0 NA 1.41500339468256 39 0.596229286158785 4 NA NA -5.76462329756052 LTS-037 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.684 1 NA NA NA NA NA LTS-037 chr17 80391535 80914743 523209 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.102400473735978 18 0.0336402050929065 0.71174109173818 800 0.192051718005655 2 2 0 -6.83182475823215 LTS-037 chr17 80914744 81083625 168882 * c(B3GNTL1, METRNL) NA 0 NA 0.694437476178988 82 0.162225299744354 2 NA NA -5.78171875721047 LTS-037 chr18 116845 581123 464279 * c(CETN1, ROCK1P1, COLEC12, USP14, THOC1) 0.475 1 NA 0.733103306271019 287 0.180023075308628 2 2 0 -5.76585351138224 LTS-037 chr18 581124 14866503 14285380 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, CETN1, RALBP1, AFG3L2, RAB31, CIDEA, ADCYAP1, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, CLUL1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, NA NA NA NA NA NA NA NA NA LTS-037 TYMSOS, C18orf61, CEP192, ENOSF1, LINC00470, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, METTL4, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, TYMS, YES1, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.438551417337453 158 0.0791018110343192 0.738955345777343 6359 0.480918021133473 2 1 1 -6.73439032857808 LTS-037 NA NA NA NA LTS-037 chr18 14866504 15006193 139690 * character(0) NA 0 NA 0.8582148906927 31 0.369684148825011 2 NA NA -5.77720716193717 LTS-037 chr18 18529727 18529837 111 * ROCK1 0.443 1 NA 0.664049611453449 3 0.390889157349412 2 2 0 -5.76441554240835 LTS-037 chr18 18529838 19450850 921013 * c(MIR320C1, ESCO1, ABHD3, MIR1-2, MIR133A1, MIB1, ROCK1, SNRPD1, GREB1L) 0.454618328298133 7 0.0336225547880614 0.715864188887953 774 0.154113770453873 2 1 1 -6.93490458656303 LTS-037 chr18 19450851 19750998 300148 * c(GATA6-AS1, GATA6, MIB1) NA 0 NA 1.122 1 NA NA NA NA NA LTS-037 chr18 19750999 20350342 599344 * c(GATA6, CTAGE1) NA 0 NA 0.980975419096237 139 0.221323488685066 3 NA NA -5.78085862054126 LTS-037 chr18 20350343 20513315 162973 * c(MIR4741, RBBP8) NA 0 NA 0.554 1 NA NA NA NA NA LTS-037 chr18 20513316 46468976 25955661 * c(CDH2, ZSCAN30, MIR302F, MIR320C2, MIR4319, MIR4318, TCEB3CL2, MIR4741, MIR3975, MIR4743, DSG2-AS1, MIR5583-2, MIR5583-1, ZNF271P, MAPRE2, OSBPL1A, HAUS1, LOXHD1, INO80C, TTC39C, PSMA8, C18orf25, SLC25A52, DSG4, AQP4-AS1, ANKRD29, TCEB3C, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, CABYR, KCTD1, LINC00907, SIGLEC15, ST8SIA5, C18orf8, AQP4, NA NA NA NA NA NA NA NA NA LTS-037 CCDC178, LAMA3, MIR187, SMAD2, SMAD7, MEP1B, WBP11P1, NPC1, RNF165, ATP5A1, IER3IP1, TCEB3B, RNF138, PIK3C3, RNF125, MOCOS, RPRD1A, ELP2, IMPACT, CELF4, KIAA1328, KLHL14, EPG5, RBBP8, HRH4, RIT2, KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, SS18, SYT4, TAF4B, TTR, PCAT18, LOC729950, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, HDHD2, ZNF397, TMEM241, NOL4, RIOK3, PSTPIP2, PIAS2, CABLES1, B4GALT6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CTIF) 0.446523262725342 129 0.0706626014672828 0.757811569782739 9158 0.225945784208838 2 1 1 -6.86706259385156 LTS-037 NA NA NA NA LTS-037 chr18 46468977 46570647 101671 * c(SMAD7, DYM) NA 0 NA 0.448146798490965 39 0.136445645973015 1 NA NA -5.76559185924522 LTS-037 chr18 46570648 46576051 5404 * DYM NA 0 NA 0.593 1 NA NA NA NA NA LTS-037 chr18 46576052 72238472 25662421 * c(SNORD58C, LINC01630, MIR1539, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RPL17-C18orf32, MIR4529, MIR3591, MIR4744, MIR5011, LINC-ROR, LINC01544, ACAA2, CD226, MALT1, POLI, ALPK2, FAM69C, STARD6, CCBE1, CBLN2, CYB5A, C18orf54, DCC, FBXO15, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, RTTN, SNORD58B, SNORD58A, CDH20, DYNAP, BOD1L2, HMSD, LOC284294, NA NA NA NA NA NA NA NA NA LTS-037 CDH19, TIMM21, GRP, RAX, CXXC1, CPLX4, OACYLP, LMAN1, LINC01538, LOC400655, MIR122, SMAD4, MBD1, MC4R, ME2, MYO5B, NARS, C18orf32, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, DYM, ZCCHC2, ZNF532, ELAC1, CNDP2, MAPK4, KIAA1468, RAB27B, BCL2, RPL17, SERPINB3, SERPINB4, LOC643542, C18orf63, SCARNA17, SNORA37, TCF4, CCDC102B, CCDC68, NETO1, MRO, CNDP1, SERPINB7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, DSEL, SOCS6, TXNL1, LIPG, ONECUT2, VPS4B) 0.440843179582348 183 0.0746573115348778 0.751754720914167 8455 0.207668183778387 2 1 1 -6.78748735963175 LTS-037 NA NA NA NA LTS-037 chr18 72238473 72264473 26001 * c(LINC00909, CNDP1) 0.478 1 NA 0.729311587109401 33 0.142640945713142 2 2 0 -5.76466257570962 LTS-037 chr18 72264474 77926862 5662389 * c(PARD6G-AS1, LOC100131655, RBFADN, TSHZ1, TXNL4A, ADNP2, GALR1, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, LOC339298, ATP9B, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, ZNF407, ZNF236, RBFA, PQLC1, PARD6G, CTDP1, ZNF516) 0.43976801891108 77 0.0785006693747012 0.730068825763134 2089 0.184739517144588 2 1 1 -6.76310821651206 LTS-037 chr18 77926863 78005362 78500 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.616811044573455 17 0.194740456988874 2 NA NA -5.80692789813455 LTS-037 chr19 107416 107456 41 * character(0) 0.399 1 NA 2.468 1 NA NA NA NA NA LTS-037 chr19 107457 2042745 1935289 * c(MED16, LOC100288123, MIR1909, MIR3187, MIR4745, FSTL3, APC2, ABCA7, UQCR11, SCAMP4, ADAT3, CIRBP, GRIN3B, MISP, CNN2, PLK5, C2CD4C, CSNK1G2, CIRBP-AS1, C19orf25, ATP8B3, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, CSNK1G2-AS1, SHC2, GAMT, DAZAP1, FGF22, ODF3L2, MKNK2, GPX4, GZMM, ADAMTSL5, NDUFS7, ONECUT3, MEX3D, LINC01002, PRSS57, PALM, THEG, ATP5D, MBD3, POLR2E, POLRMT, MIER2, PCSK4, C19orf24, NA NA NA NA NA NA NA NA NA LTS-037 BTBD2, RNF126, PRTN3, AZU1, PTBP1, WDR18, REXO1, HCN2, RPS15, STK11, BSG, TCF3, PLPPR3, OR4F17, MADCAM1, ABHD17A, KLF16, KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, REEP6, CDC34) 0.196633058357787 136 0.0652384732178763 0.434834359706625 3999 0.138216892567188 1 1 0 -6.88936295912914 LTS-037 NA NA NA NA LTS-037 chr19 2042746 2073466 30721 * c(MOB3A, MKNK2) 0.148 1 NA 0.425054622556292 33 0.130449143985948 1 1 0 -5.77000376685455 LTS-037 chr19 2073467 2102306 28840 * c(IZUMO4, MOB3A, AP3D1) 0.161358529854875 5 0.0274899981811567 0.420866755687422 82 0.118585536677893 1 1 0 -7.22333604644438 LTS-037 chr19 2102307 2108590 6284 * AP3D1 NA 0 NA 0.592 1 NA NA NA NA NA LTS-037 chr19 2108591 3573053 1464463 * c(C19orf71, MIR1227, MIR4321, HMG20B, ZNF554, ZNF57, JSRP1, MFSD12, DIRAS1, ZNF555, AES, TIMM13, AMH, GNA11, GNA15, GNG7, SMIM24, SLC39A3, TMPRSS9, C19orf35, GADD45B, NFIC, OAZ1, FZR1, LSM7, PLEKHJ1, NCLN, SPPL2B, ZNF77, CELF5, SGTA, LINGO3, THOP1, TLE2, TLE6, ZNF556, SF3A2, DOHH, DOT1L, LMNB2, S1PR4, AP3D1) 0.124549075033191 74 0.0605491407455165 0.711626621476439 2186 0.202959701148533 2 2 0 -6.78644372350542 LTS-037 chr19 3573054 4772343 1199290 * c(DPP9-AS1, CHAF1A, MIR4746, EBI3, HMG20B, SEMA6B, MRPL54, LRG1, TMIGD2, TNFAIP8L1, GIPC3, DAPK3, ANKRD24, EEF2, ZFR2, PIP5K1C, SNORD37, TJP3, NMRK2, MIR7-3HG, CACTIN-AS1, MIR7-3, MATK, PLIN5, ZBTB7A, SIRT6, PIAS4, STAP2, CCDC94, MYDGF, MAP2K2, SHD, CACTIN, SH3GL1, TBXA2R, MIR637, PLIN4, FSD1, UBXN6, CREB3L3, HDGFRP2, RAX2, MPND, ATCAY, DPP9, APBA3) 0.110629838803004 74 0.0696472959624132 0.989555442592803 2539 0.319237604075126 3 3 0 -6.83610940611581 LTS-037 chr19 4772344 4902754 130411 * c(PLIN3, TICAM1, MIR7-3HG, FEM1A, ARRDC5) 0.218 1 NA 1.04473134470464 133 0.272809969899313 3 3 0 -5.76466493695833 LTS-037 chr19 4902755 4911011 8257 * c(UHRF1, ARRDC5) NA 0 NA 0.920628186659564 19 0.213906316598416 3 NA NA -5.76574109876263 LTS-037 chr19 4911012 4929159 18148 * UHRF1 NA 0 NA 1.236 1 NA NA NA NA NA LTS-037 chr19 4929160 18900081 13970922 * c(SNORD105B, ZGLP1, LOC100128568, LOC100128573, TMEM221, PET100, MIR1470, MIR1181, MIR1238, MIR3188, MIR4322, MIR3189, SH2D3A, MIR3940, LOC100507373, RAB11B-AS1, TGFBR3L, ZNF559-ZNF177, ZNF625-ZNF20, AP1M2, MIR4747, MIR4748, MIR4999, DDX39A, ZNF443, AKAP8, CDKN2D, B3GNT3, CLEC4M, KLF2, TUBB4A, IFI30, TIMM44, CARM1, CHERP, RNASEH2A, KLF1, GIPC1, ZNF266, PNPLA6, ILVBL, TMED1, CDC37, FDX1L, CYP4F8, NACC1, MISP3, NA NA NA NA NA NA NA NA NA LTS-037 PGLYRP2, CCDC124, EVI5L, NXNL1, CCDC151, ZNF653, CIB3, RLN3, RAVER1, OR7D4, OR7G1, OR1M1, CALR3, ACER1, C19orf70, MBD3L2, TRAPPC5, PCP2, ZNF441, ZNF491, ZNF440, SWSAP1, CCDC159, NDUFA11, LRRC25, OR1I1, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, ZNF358, ILF3-AS1, ZNF560, ZNF563, SPC24, ZNRF4, ZNF558, LINC00905, ZNF846, OR7D2, ZNF791, ZNF564, ZNF709, ZNF433, PRR22, SSBP4, DHPS, DNASE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DNM2, DNMT1, ELAVL1, ELAVL3, MCEMP1, ZNF627, DAND5, FAM129C, ADGRE1, EPOR, NR2F6, FARSA, FCER2, ADGRL1, MAST1, UNC13A, KDM4B, MAST3, FCHO1, SIN3B, ARHGEF18, CRTC1, BRD4, CASP14, FKBP8, FUT3, FUT5, FUT6, C19orf38, SYCE2, KANK3, TINCR, CATSPERD, TMEM59L, PGLS, LSM4, RPL36, KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, OR7E24, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CPAMD8, ACTL9, OR2Z1, ZNF561-AS1, ZNF763, ZNF844, SLC25A41, MBD3L5, OR10H5, NWD1, LOC284454, C19orf53, BABAM1, UHRF1, GTF2F1, HOOK2, TNPO2, ADGRE2, CD209, ADGRE4P, DNAJB1, ICAM1, ICAM3, ICAM4, CLEC4G, NANOS3, PALM3, IL12RB1, ILF3, INSL3, INSR, JAK3, JUNB, JUND, HSD11B1L, C19orf45, ZNF699, TMEM205, SLC27A1, KCNN1, LYPLA2P2, C3P1, ZNF788, CLEC17A, CYP4F24P, OR7G2, OR7G3, OR7A10, LDLR, VMAC, ZNF833P, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CTXN1, CYP4F3, LYL1, MIR181C, MIR199A1, MAN2B1, RAB8A, MLLT1, ASNA1, CLEC4GP1, MYO1F, MYO9B, HNRNPM, NDUFA7, NDUFB7, NFIX, NOTCH3, NRTN, FLJ25758, P2RY11, COL5A3, RDH8, MRPL4, ANGPTL4, MARCH2, CD320, ECSIT, WDR83OS, PDE4A, PDE4C, ISYNA1, ZNF44, PIK3R2, PIN1, S1PR5, ACP5, ZNF562, BEST2, FBXL12, PGPEP1, CC2D1A, C19orf60, MAP1S, KLHL26, C19orf66, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, USE1, PRKCSH, ANGPTL8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MAP2K7, PSPN, PPAN, RETN, GPR108, DUS3L, XAB2, RGL3, SLC44A2, MCOLN1, PTGER1, MIR181D, ZNF490, DOCK6, CAMSAP3, ZNF317, ANO8, CYP4F11, PTPRS, EPS15L1, WIZ, RAB3A, RAD23A, UBL5, RFX1, RFX2, RPL18A, RPS28, SAFB, CCL25, C19orf67, PLPPR2, RASAL3, MRPL34, KRI1, SLC1A6, ZSWIM4, SLC5A5, UCA1, MBD3L4, MBD3L3, SMARCA4, CYP4F12, SNAPC2, STXBP2, BST2, SNORD105, PPAN-P2RY11, MIR638, MIR639, PRDX2, ICAM5, TPM4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 C3, ZNF812P, TYK2, ZNF878, LOC729966, UBA52, VAV1, ZNF20, ZNF69, ZNF121, ZNF136, CACNA1A, ZNF177, YIPF2, C19orf43, DDA1, KXD1, TMEM38A, SLC25A23, SMIM7, ZNF426, C19orf57, ZNF557, ABHD8, CERS4, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, DENND1C, ZNF442, LRRC8E, PRR36, KIAA1683, CALR, CCDC130, ACSBG2, ELL, ADAMTS10, QTRT1, CLPP, CAPS, PLVAP, RTBDN, ANGPTL6, USHBP1, PRAM1, C19orf44, MRI1, FBXW9, ALKBH7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 WDR83, ZNF414, ELOF1, ZNF333, FBN3, ZNF559, ADGRE3, GTPBP3, MPV17L2, HSH2D, ATG4D, RANBP3, CYP4F2, SYDE1, MBD3L1, KHSRP, EIF3G, STX10, TNFSF14, TNFSF9, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF799, C19orf52, ZNF625, ZNF700, ZNF439, RAB11B, CRB3, CRLF1, S1PR2, PEX11G, ZNF561, OLFM2, TRIP10, HAUS8, MVB12A, LONP1, MUC16, MED26, IL27RA, GDF15, TECR, RAB3D, IER2, SAFB2, CD70, ADGRE5, KEAP1) 0.19781250013418 648 0.0509758778118282 1.13707389097376 24254 0.344650338880746 4 3 1 -9.25698064585858 LTS-037 NA NA NA NA LTS-037 chr19 18900082 18901314 1233 * COMP NA 0 NA 1.85 1 NA NA NA NA NA LTS-037 chr19 18901315 19049749 148435 * c(CERS1, COPE, COMP, GDF1, DDX49, UPF1, HOMER3) 0.144829869134432 4 0.00377491721763537 1.68772711506867 347 0.390931544356052 15 13 2 -7.50605897580473 LTS-037 chr19 19049750 19105088 55339 * c(SUGP2, HOMER3) NA 0 NA 1.169 1 NA NA NA NA NA LTS-037 chr19 19105089 20973603 1868515 * c(ZNF737, MEF2B, MIR1270, SUGP2, NR2C2AP, NCAN, CILP2, ZNF626, MAU2, SLC25A42, LINC00663, YJEFN3, HAPLN4, BORCS8-MEF2B, ZNF506, NDUFA13, GMIP, TM6SF2, GATAD2A, TMEM161A, ZNF253, ATP13A1, SUGP1, ZNF826P, BORCS8, ZNF14, ZNF90, PBX4, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ARMC6, ZNF101) 0.179595156694131 51 0.0354705290540267 1.43540070084791 2001 0.39605033204915 6 5 1 -7.36329810468016 LTS-037 chr19 20973604 20975399 1796 * character(0) NA 0 NA 1.058 1 NA NA NA NA NA LTS-037 chr19 20975400 21492177 516778 * c(ZNF714, ZNF431, ZNF708, ZNF85, ZNF430) 0.185 1 NA 1.11707373909719 164 0.235353063723886 3 3 0 -5.80228920381082 LTS-037 chr19 21492178 21493280 1103 * ZNF708 NA 0 NA 1.442 1 NA NA NA NA NA LTS-037 chr19 21493281 23688722 2195442 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF738, ZNF676, ZNF100, ZNF493, ZNF429, ZNF728, LINC00664, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF708, ZNF43, ZNF91, ZNF99, ZNF208) 0.145618056029965 27 0.0645780077760153 1.41783059303499 718 0.408050494731363 4 4 0 -7.59179977694333 LTS-037 chr19 23688723 23836021 147299 * ZNF675 NA 0 NA 0.84 1 NA NA NA NA NA LTS-037 chr19 23836022 24345092 509071 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF254) 0.310313348915316 5 0.0593607614506418 0.936919662239216 277 0.352832981863327 4 3 1 -7.13100349135823 LTS-037 chr19 24345093 24345121 29 * HAVCR1P1 NA 0 NA 0.667340754625464 3 0.0917986928011505 2 NA NA -5.76443293610542 LTS-037 chr19 28247625 30054746 1807122 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.022 1 NA 7.26355104074859 55 2.85669483597016 20 20 0 -5.77024843152095 LTS-037 chr19 30054747 30433635 378889 * c(POP4, VSTM2B, PLEKHF1, C19orf12, URI1, CCNE1) 0.0194706188044179 8 0.00567576300723398 7.4851255551503 217 2.79354065212304 15 15 0 -6.74231453174116 LTS-037 chr19 30433636 30462033 28398 * URI1 NA 0 NA 0.547 1 NA NA NA NA NA LTS-037 chr19 30462034 31038995 576962 * c(URI1, ZNF536) 0.331 1 NA 0.604173735454838 117 0.148007885659875 2 2 0 -6.37168634226058 LTS-037 chr19 31038996 31039296 301 * ZNF536 0.448 1 NA 0.5970376230178 7 0.18696409128111 2 2 0 -5.76465544313522 LTS-037 chr19 31039297 38572107 7532811 * c(HPN-AS1, LINC01531, SCGB2B3P, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, THEG5, UBA2, LOC100631378, LINC00904, MIR5196, UPK1A-AS1, TMEM147, CEBPA, CEBPG, HCST, UPK1A, SLC7A9, TBCB, ARHGAP33, ZNF573, WDR88, WTIP, ZNF792, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, DPY19L3, ZNF599, FAM187B, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, LGI4, SYNE4, ZNF540, ZNF585A, THAP8, U2AF1L4, ETV2, ZFP30, ZNF507, NA NA NA NA NA NA NA NA NA LTS-037 SIPA1L3, HAUS5, ZNF345, CLIP3, LSM14A, GAPDHS, ZBTB32, GPI, SCGB2B2, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR1, FFAR3, FFAR2, HPN, APLP1, ZNF181, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, RGS9BP, KRTDAP, ZNF790, NUDT19, ZNF793, LOC400684, LOC400685, LRP3, MAG, NPHS1, ATP4A, ZNF571, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, POLR2I, GPATCH1, PSENEN, ZNF302, LIN37, SLC7A10, TSHZ3, GRAMD1A, ZFP14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZNF529, HAMP, PRODH2, SCN1B, SCGB1B2P, CHST8, SDHAF1, LOC644189, LOC644554, OVOL3, LOC728752, TYROBP, USF2, ZNF146, KCTD15, RBM42, LRFN3, IGFLR1, CEBPA-AS1, CAPNS1, WDR87, KIRREL2, ANKRD27, PDCD2L, ZNF527, ZNF607, NFKBID, CEP89, ZNF382, ZNF566, ALKBH6, RHPN2, ZNF30, PDCD5, FAAP24, TDRD12, ZNF461, ZNF585B, DMKN, CD22, NA, KIAA0355, ZNF536, KMT2B) 0.36247064487512 164 0.0735439355717012 0.582532930345426 7621 0.156240564100466 2 1 1 -11.8898909196865 LTS-037 NA NA NA NA LTS-037 chr19 38572108 38572237 130 * SIPA1L3 NA 0 NA 0.368 1 NA NA NA NA NA LTS-037 chr19 38572238 38621440 49203 * SIPA1L3 0.262170475529137 4 0.0631981012372998 0.30518606114906 83 0.0890705442735411 1 1 0 -8.03116413760453 LTS-037 chr19 38621441 38631772 10332 * SIPA1L3 NA 0 NA 0.496 1 NA NA NA NA NA LTS-037 chr19 38631773 40384193 1752421 * c(LOC100129935, MIR4530, IFNL4, PAK4, SPINT2, DLL3, MAP4K1, FBXO17, RASGRP4, CLC, EID2B, RINL, FBXO27, FAM98C, CAPN12, LGALS16, EID2, ECH1, GGN, FBL, SIRT2, SIPA1L3, EIF3K, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, PSMD8, LRFN1, CATSPERG, MRPS12, RPS16, RYR1, C19orf33, CCER2, PLEKHG2, NA NA NA NA NA NA NA NA NA LTS-037 LGALS7B, SUPT5H, ZFP36, ACTN4, DPF1, FCGBP, YIF1B, DYRK1B, TIMM50, KCNK6, PPP1R14A, GMFG) 0.340553561977646 96 0.0691326456702506 0.583791322310244 3568 0.186880824717849 2 1 1 -9.08444137910071 LTS-037 NA NA NA NA LTS-037 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.326 1 NA NA NA NA NA LTS-037 chr19 40389650 40399881 10232 * FCGBP 0.386061902347876 3 0.0705714767688287 0.249475433456398 39 0.0766999604994734 0 0 0 -7.1701993052321 LTS-037 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 0.841 1 NA NA NA NA NA LTS-037 chr19 40405935 49636574 9230640 * c(SNAR-G1, SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-G2, SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR3191, MIR3190, MIR320E, MIR4323, MIR642B, PCAT19, LOC100505622, NAPA-AS1, LOC100505715, CARD8-AS1, PPP5D1, DACT3-AS1, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, SAE1, MIR4531, RNU6-66P, LIPE-AS1, LOC101059948, TOMM40, CEACAM5, RABAC1, ZNF234, CGB3, CEACAM3, PPP1R13L, CD3EAP, RUVBL2, NA NA NA NA NA NA NA NA NA LTS-037 CEACAM7, CEACAM8, CEACAM4, KDELR1, HNRNPUL1, CLASRP, KPTN, EGLN2, CGB1, CGB2, LMTK3, CKM, ZNF526, AP2S1, CLPTM1, CEACAM20, NTN5, IRGQ, ZNF428, C19orf47, CRX, PPM1N, KLC3, IGSF23, LYPD4, HIPK4, DACT3, SIX5, IGFL2, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DBP, ZNF296, DEDD2, ZNF114, ZNF780B, SPACA4, DMPK, DMWD, MEGF8, CADM4, EMP3, ERCC1, ERCC2, ERF, AKT2, CARD8, CYP2G1P, CIC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZC3H4, FBXO46, ETHE1, FOSB, SYNGR4, PRG1, CBLC, PPP1R15A, PLD3, EML2, FTL, FUT1, FUT2, INAFM1, PRKD2, CCDC9, IRF2BP1, FGF21, GIPR, ZNF285, LYPD3, BBC3, C5AR2, DHDH, GPR4, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, TPRX1, MAMSTR, IZUMO1, GRIK5, GRIN2D, ARHGAP35, GSK3A, CYP2S1, STRN4, SERTAD3, SERTAD1, GYS1, GLTSCR2, GLTSCR1, EHD2, FOXA3, ZNF546, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, KCNA7, B3GNT8, IGFL1, KCNJ14, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, LHB, LIG1, LIPE, BCAM, MAP3K10, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, NPAS1, NTF4, NUCB1, PAFAH1B3, HSD17B14, PLAUR, RAB4B, POU2F2, QPCTL, FAM83E, RASIP1, TMEM160, ATP5SL, C19orf73, PNMAL1, TMEM143, PPP5C, AXL, SMG9, IRGC, CABP5, PSG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, SPHK2, EXOSC5, MEIS3, CEACAM19, PSMC4, CD177, PTGIR, PNMAL2, PLEKHA4, PRX, SPTBN4, MARK4, BAX, PVR, NECTIN2, BCAT2, BCKDHA, RELB, BCL3, RPL18, RPS19, RTN2, CEACAM1, DMRTC2, ELSPBP1, LIN7B, SELENOW, TMEM91, HIF3A, BLVRB, ZNF574, SLC1A5, PSG10P, PHLDB3, SEC1P, SLC8A2, SNRNP70, SNRPA, SNRPD2, SULT2B1, SULT2A1, SNORD23, MIR641, MIR642A, TGFB1, C5AR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 TULP2, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, CA11, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, FKRP, ZNF576, GEMIN7, COQ8B, CNTD2, OPA3, ITPKC, B9D2, CALM3, RSPH6A, SYMPK, MIA, TEX101, GRWD1, CCDC8, ZNF541, LTBP4, CNFN, PPFIA3, PLA2G4C, NAPA, FCGBP, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, CYTH2, SHKBP1, ZNF235, CCDC114, LOC93429, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CGB5, CGB7, CGB8, GNG8, DHX34, CD79A) 0.358724397883246 365 0.0705931149757611 0.57819094113536 15346 0.188356039867246 2 1 1 -11.7326461729431 LTS-037 NA NA NA NA LTS-037 chr19 49636575 49637002 428 * PPFIA3 NA 0 NA 0.989 1 NA NA NA NA NA LTS-037 chr19 49637003 49692405 55403 * c(HRC, TRPM4, PPFIA3) 0.466163402608393 7 0.0291130800255045 0.797066266753424 230 0.177641218755955 2 1 1 -7.30665518552243 LTS-037 chr19 49692406 49693438 1033 * TRPM4 NA 0 NA 0.604 1 NA NA NA NA NA LTS-037 chr19 49693439 50771558 1078120 * c(SNAR-B2, SNAR-D, MIR4324, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, PNKP, PTH2, SIGLEC11, IZUMO2, CPT1C, ALDH16A1, CCDC155, AP2A1, ADM5, FCGRT, ATF5, FLT3LG, RPL13A, NUP62, ZNF473, IL4I1, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, SLC6A16, PRMT1, IRF3, SIGLEC16, LOC400710, MIR150, NOSIP, VRK3, PTOV1, TRPM4, PIH1D1, PRRG2, SLC17A7, RCN3, PRR12, SCAF1, TSKS, RPS11, RRAS, TBC1D17, MYH14, NA NA NA NA NA NA NA NA NA LTS-037 FUZ, MED25, BCL2L12, AKT1S1, SNORD35B, TEAD2, CD37) 0.378580039347269 68 0.0687977848940017 0.573298354542888 2617 0.154239792198868 2 1 1 -8.55342435941574 LTS-037 NA NA NA NA LTS-037 chr19 50771559 50771562 4 * MYH14 NA 0 NA 0.739 1 NA NA NA NA NA LTS-037 chr19 50771563 51126005 354443 * c(SNAR-F, FAM71E1, JOSD2, NAPSB, EMC10, KCNC3, MYBPC2, POLD1, ASPDH, SPIB, NR1H2, MYH14, SYT3, LRRC4B, NAPSA) 0.401157851725576 7 0.105962032733203 0.724715500840207 736 0.172817424165401 2 1 1 -6.80305310894436 LTS-037 chr19 51126006 51126013 8 * SYT3 NA 0 NA 0.466 1 NA NA NA NA NA LTS-037 chr19 51126014 51261892 135879 * c(C19orf81, SHANK1, CLEC11A, SYT3) 0.378204776415139 4 0.056335305685393 0.589674518221241 304 0.139649325656247 2 1 1 -7.52852801604969 LTS-037 chr19 51261893 51331156 69264 * c(MGC45922, GPR32, KLK1, KLK15, SNORD88A, SNORD88B, SNORD88C, C19orf48, ACPT) NA 0 NA 0.602608278362226 159 0.126760661034458 2 NA NA -5.87528670644945 LTS-037 chr19 51331157 51334719 3563 * KLK15 NA 0 NA 0.776 1 NA NA NA NA NA LTS-037 chr19 51334720 51361472 26753 * c(KLK3, KLK15) 0.282 1 NA 0.873644328212063 17 0.177240137035804 2 2 0 -5.77786019651702 LTS-037 chr19 51361473 52133661 772189 * c(LOC100129083, KLK11, KLK8, CLDND2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, KLK9, SIGLEC17P, SIGLECL1, KLK3, KLK2, LIM2, IGLON5, KLK14, KLK12, NKG7, KLK7, KLK6, KLK10, KLKP1, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, CD33, SIGLEC6, KLK4) 0.235613428703443 52 0.0555469818673358 0.845850681728743 1415 0.256855615132617 4 3 1 -8.25747562212259 LTS-037 chr19 52133662 52133675 14 * SIGLEC5 NA 0 NA 1.073 1 NA NA NA NA NA LTS-037 chr19 52133676 52196631 62956 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B, SIGLEC5) NA 0 NA 1.60531965058925 39 0.816261754807656 5 NA NA -5.76441065885493 LTS-037 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 0.959 1 NA NA NA NA NA LTS-037 chr19 52196825 54726811 2529987 * c(MIR935, ERVV-2, MIR1283-2, MIR1323, MIR1283-1, ZNF816-ZNF321P, MIR371B, LILRB3, BIRC8, ZNF816, OSCAR, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TMC4, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, PRPF31, ZNF615, ZNF841, LOC284379, VSTM1, TFPT, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, PPP2R1A, ZNF331, NA NA NA NA NA NA NA NA NA LTS-037 ZNF701, ZNF83, ZNF415, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CACNG7, CACNG6, ZNF350, RPS9, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, TSEN34, MBOAT7, LENG1, LILRA6, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF765, NLRP12, MYADM, ZNF845, ZNF432) 0.227237047884441 113 0.0640349898919939 0.864768663447998 4072 0.546581207595376 4 3 1 -7.92957568882647 LTS-037 NA NA NA NA LTS-037 chr19 54726812 54745572 18761 * c(LILRB3, LILRA6) 0.283355735522251 4 0.156284729473697 1.68698018324867 45 0.569409941797807 4 3 1 -6.73520815052542 LTS-037 chr19 54745573 54745977 405 * c(LILRB3, LILRA6) NA 0 NA 0.907 1 NA NA NA NA NA LTS-037 chr19 54745978 55175732 429755 * c(MIR4752, LILRB2, LILRB1, LILRB5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, LENG8, CDC42EP5, LILRA4, LILRA5, LAIR1, LAIR2, TTYH1, LILRA6, KIR3DX1, LENG9) 0.247508783564444 40 0.0880952136422102 0.83555522150148 986 0.232394627129524 4 3 1 -7.67438985322236 LTS-037 chr19 55175733 55181784 6052 * LILRB4 NA 0 NA 0.206737531505353 79 0.0516767221214522 0 NA NA -5.81353997903666 LTS-037 chr19 55181785 55235875 54091 * LILRP2 NA 0 NA 0.752 1 NA NA NA NA NA LTS-037 chr19 55235876 55258830 22955 * c(KIR3DL3, KIR2DL1, KIR2DL3) 0.283757665979432 6 0.0222837758619734 0.846418346557339 44 0.193132314512851 4 3 1 -6.80569954924643 LTS-037 chr19 55258831 55258929 99 * c(KIR2DL1, KIR2DL3) NA 0 NA 0.864 1 NA NA NA NA NA LTS-037 chr19 55258930 55297952 39023 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.353658977487009 8 0.104172933144843 0.358538080139233 39 0.207091682383143 3 2 1 -7.28770013509053 LTS-037 chr19 55297953 55297955 3 * c(KIR2DS4, KIR3DL1) 0.337 1 NA 1.153 1 NA NA NA NA NA LTS-037 chr19 55297956 58102332 2804377 * c(MIMT1, ZNF667-AS1, SBK3, PEG3-AS1, ZNF865, RNU6-64P, TRAPPC2B, ZNF460, RDH13, U2AF2, ZIM3, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF550, ZNF579, NLRP7, NLRP11, FCAR, PPP6R1, ZIM2, HSPBP1, TMEM86B, ZNF549, UBE2S, SSC5D, ZNF547, ZIK1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, DNAAF3, IL11, ZNF773, NA NA NA NA NA NA NA NA NA LTS-037 KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF805, ZNF772, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, EPS8L1, ZNF444, NLRP2, ZNF416, NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, ZNF667, SBK2, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF17, ZSCAN5A, ZNF419, ISOC2, BRSK1, KMT5C, FIZ1, GALP, ZNF628, ZNF835, ZNF264, NCR1) 0.23178929011844 175 0.0738107574450644 0.861228304664237 5235 0.3510043015954 2 2 0 -8.23587421605839 LTS-037 NA NA NA NA LTS-037 chr19 58102333 59082605 980273 * c(A1BG, LOC100128398, MZF1-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, ZNF274, SLC27A5, ZNF837, C19orf18, ZNF418, ZNF417, ZNF497, ZNF584, ZSCAN4, FKBP1AP1, ZNF324, CHMP2A, ZNF544, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF324B, A1BG-AS1, ZNF586, ZNF446, RPS5, RNF225, ZSCAN18, ZNF814, ZNF8, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, ZNF551, UBE2M) 0.141340323737198 13 0.0343787352282983 0.748785549222741 2223 0.175342076317374 2 2 0 -7.06655921243317 LTS-037 chr19 59082606 59084001 1396 * c(MZF1-AS1, MZF1) NA 0 NA 0.670610742256736 9 0.0496515636992208 2 NA NA -5.76794437515287 LTS-037 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.49 1 NA 1.24934905786775 53 0.260416055132325 4 4 0 -5.76670150687505 LTS-037 chr20 168467 21370212 21201746 * c(SNORD119, C20orf78, LOC100130264, SNAP25-AS1, UBOX5-AS1, LOC100270804, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, SDCBP2-AS1, LINC00658, FKBP1A-SDCBP2, SIRPB1, SEC23B, NOP56, CENPB, RBCK1, POLR3F, RBBP9, DSTN, CHGB, RNF24, SLC52A3, HSPA12B, TMC2, TBC1D20, SIRPD, C20orf141, PROKR2, SLX4IP, C20orf96, MACROD2, SRXN1, BANF2, SCP2D1, ISM1, DEFB129, SIRPA, STK35, NA NA NA NA NA NA NA NA NA LTS-037 CSNK2A1, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, JAG1, FKBP1A, XRN2, UBOX5, BTBD3, PLCB1, PRND, FLRT3, LAMP5, DEFB128, SPEF1, C20orf194, CFAP61, SDCBP2, SNX5, GNRH2, SIRPB2, TMEM230, LINC00652, LOC339593, IDH3B, RSPO4, TGM6, INSM1, ITPA, LINC00493, DEFB132, C20orf202, MIR103A2, LINC00851, OXT, PCNA, NAA20, PCSK2, CRNKL1, ANGPT4, ESF1, TRMT6, PDYN, PLCB4, HAO1, RIN2, SMOX, CRLS1, C20orf27, AVP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 DZANK1, SPTLC3, AP5S1, TMEM74B, SIRPG, FERMT1, KIF16B, TASP1, KIZ, NSFL1C, PRNP, TMX4, GPCPD1, CPXM1, OTOR, PAK5, RALGAPA2, KAT14, SLC24A3, MAVS, EBF4, TRIB3, PTPRA, OVOL2, FASTKD5, RRBP1, BFSP1, ANKEF1, GFRA4, RAD21L1, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNAP25, SNRPB, SNRPB2, SOX12, SNORA51, SNORD17, SNORD110, TCF15, TGM3, LINC01433, ZNF133, NDUFAF5, ZNF343, NRSN2, PANK2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ADAM33, SEL1L2, MKKS, FAM110A, SLC4A11, MCM8, ATRN, ZCCHC3, SCRT2, CDS2, MGME1, DTD1, PSMF1, SNPH, LZTS3, RASSF2, CDC25B, SLC23A2) 0.450848552640542 314 0.0582088232910737 1.30120074309479 12346 0.384178677228756 4 2 2 -6.77853667639382 LTS-037 NA NA NA NA LTS-037 chr20 21370213 21378266 8054 * c(XRN2, NKX2-4) NA 0 NA 0.872187915203328 46 0.355611800503027 2 NA NA -5.76539739505939 LTS-037 chr20 21378267 25594020 4215754 * c(LINC01432, CST8, CSTL1, CST9L, CST9, LINC00261, NANP, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, CD93, NINL, ABHD12, LOC284788, LOC284798, NXT1, VSX1, FOXA2, FLJ33581, NKX2-2, PAX1, APMAP, PYGB, NAPB, GZF1, SSTR4, THBD, SYNDIG1, ACSS1, CST7, GGTLC1, ENTPD6, GINS1) 0.442108469834555 48 0.0652090711557288 1.29938865575519 1934 0.33265358157055 4 2 2 -6.74063562346956 LTS-037 chr20 25594021 25752615 158595 * c(NANP, ZNF337, FAM182B) 0.22 1 NA 1.28385245785596 163 0.306957960974051 4 4 0 -5.76497282620957 LTS-037 chr20 25752616 26063881 311266 * c(LOC100134868, FAM182A, FAM182B) 0.30489488534022 23 0.0928760064234567 1.26234943364898 62 0.464552686256116 4 3 1 -6.76917971960613 LTS-037 chr20 26063882 26188973 125092 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.279331687020942 9 0.125563507614452 0.80999518098206 36 0.422308752620263 4 3 1 -6.83048524826191 LTS-037 chr20 26188974 26189020 47 * MIR663AHG NA 0 NA 0.601469750446966 7 0.233116157434749 2 NA NA -5.7644327182917 LTS-037 chr20 29625845 29625876 32 * FRG1BP 0.375 1 NA 1.106 1 NA NA NA NA NA LTS-037 chr20 29625877 29652099 26223 * c(MLLT10P1, FRG1BP) 0.331707507127318 15 0.0673591652476272 0.98110883667263 45 0.3938063180824 6 4 2 -6.81083529275431 LTS-037 chr20 29652100 29891003 238904 * c(DEFB115, FRG1BP) 0.486 1 NA 1.23772293629537 17 0.601393950604368 4 4 0 -5.76584598321017 LTS-037 chr20 29891004 48770152 18879149 * c(ADA, ACOT8, MCTS2P, SNORD12B, ZNF663P, LOC100131496, LOC100287792, MIR3193, MIR3646, MIR3616, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, TGIF2-C20orf24, MIR499B, MIR4755, LINC00489, HM13-AS1, TRERNA1, SGK2, RBM12, MMP24-AS1, MYL9, WFDC2, PROCR, ARFGEF2, SPINT3, MMP24, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, CEP250, PXMP4, TP53RK, RBPJL, DNTTIP1, DEFB118, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, OCSTAMP, DUSP15, NA NA NA NA NA NA NA NA NA LTS-037 TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, SLC32A1, BPIFA2, WFDC3, NOL4L, MROH8, CCM2L, SOGA1, TLDC2, RIMS4, SUN5, ROMO1, NEURL2, ZSWIM3, WFDC10A, WFDC6, C20orf173, LINC00028, CNBD2, R3HDML, CSE1L, ADIG, GTSF1L, WFDC5, LOC149950, COMMD7, BPIFB4, WFDC13, TTLL9, ACTL10, ASXL1, DNMT3B, E2F1, AHCY, EPB41L1, EYA2, DLGAP4, RALY, MAPRE1, TPX2, ZHX3, NCOA6, FOXS1, SLC9A8, POFUT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ZMYND8, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, WFDC11, WFDC9, SAMHD1, AAR2, L3MBTL1, PPP1R16B, TRPC4AP, SNORD12C, SNORA71B, SNORA71A, GGT7, GHRH, TP53TG5, WFDC10B, LINC00494, C20orf203, REM1, GSS, HCK, HNF4A, BPIFA4P, LOC339568, ID1, ARHGAP40, XKR7, BPIFB3, EIF6, KCNB1, KCNS1, TMEM189, TMEM189-UBE2V1, SNHG17, SPINT4, LBP, MMP9, ASIP, ZFAS1, MYBL2, NNAT, SLC35C2, IFT52, PHF20, SCAND1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 BPIFA1, OSER1, PIGT, ERGIC3, CDK5RAP1, PI3, PLAGL2, PLCG1, PLTP, CTSA, UQCC1, DDX27, ZNF334, EDEM2, DBNDD2, ACSS2, RNF114, SULF2, C20orf24, CTNNBL1, EPPIN, RALGAPB, JPH2, ZNFX1, PTGIS, NDRG3, MIR499A, SLC12A5, PREX1, MYH7B, NCOA5, TP53INP2, RPRD1B, RBL1, BCL2L1, TGIF2, KCNK15, DHX35, RPN2, SDC4, MANBAL, ELMO2, ZNF335, PCIF1, NECAB3, SEMG1, SEMG2, SRSF6, CDH22, NORAD, SLC13A3, LPIN3, SLPI, SNAI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SNTA1, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STAU1, STK4, SNORD12, MIR644A, TGM2, TNNC2, TOP1, UBE2V1, YWHAB, SYS1-DBNDD2, MKRN7P, GDAP1L1, LINC01260, TTPAL, ACTR5, DSN1, PABPC1L, BPIFB2, SLC2A10, HM13, PDRG1, FAM83D, GDF5, NCOA3, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, COX4I2, ZNF341, TOX2, MYLK2, KIAA1755, MATN4, WISP2, EIF2S2, CPNE1, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, NFS1, CBFA2T2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 BPIFB1, B4GALT5, KIF3B, CD40, RBM39, TTI1, TM9SF4, SPATA2, MAFB) 0.450946823238348 385 0.0671767998879213 1.2707130987866 19928 0.328316024957482 4 2 2 -6.87926228040502 LTS-037 NA NA NA NA LTS-037 chr20 48770153 48808889 38737 * c(CEBPB, TMEM189, TMEM189-UBE2V1) NA 0 NA 0.775927358399481 40 0.385391559126759 2 NA NA -5.76471048711145 LTS-037 chr20 48808890 60777232 11968343 * c(MIR298, CDH4, MIR1257, MIR4325, MIR3194, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4532, MIR4533, MIR5095, ATP9A, SYCP2, CEBPB, FAM210B, PHACTR3, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, FAM65C, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, ADNP, SPO11, SS18L1, MTG2, MOCS3, GNAS, LINC01270, C20orf197, MIR646HG, KCNG1, FAM209B, SUMO1P1, MIR296, MC3R, NFATC2, NA NA NA NA NA NA NA NA NA LTS-037 PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, PPP4R1L, RBM38, BCAS4, ZFP64, DOK5, PSMA7, PMEPA1, CASS4, SALL4, RAB22A, PTPN1, CDH26, FAM217B, BMP7, AURKA, TAF4, MIR645, TFAP2C, ZNF217, NPEPL1, TUBB1, ZBP1, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB) 0.44620136663021 143 0.0661181850906755 1.25807858678119 6272 0.444770860826245 4 2 2 -6.81521100163478 LTS-037 NA NA NA NA LTS-037 chr20 60777233 60791404 14172 * c(HRH3, MTG2) 0.451 1 NA 1.18051609575077 29 0.353189102142069 4 4 0 -5.76519800034167 LTS-037 chr20 60791405 62907521 2116117 * c(UCKL1-AS1, MIR941-1, MIR941-3, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR1914, MIR4326, MIR3196, RTEL1-TNFRSF6B, MIR4758, LINC00659, ARFRP1, OGFR-AS1, RGS19, TCFL5, ADRM1, OGFR, DIDO1, HRH3, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, ZBTB46, SAMD10, ABHD16B, RBBP8NL, EEF1A2, LKAAEAR1, PRPF6, C20orf166-AS1, GMEB2, SLCO4A1, NPBWR2, LINC00176, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, MYT1, NA NA NA NA NA NA NA NA NA LTS-037 NTSR1, OPRL1, STMN3, RTEL1, SOX18, YTHDF1, LIME1, UCKL1, GID8, PCMTD2, MRGBP, ARFGAP1, SLC2A4RG, ZNF512B, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, TCEA2, MIR647, TPD52L2, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, DNAJC5, CABLES2, ZGPAT, HELZ2, TNFRSF6B, OSBPL2) 0.461497413509967 160 0.0367936281057249 1.25963951415187 5060 0.329941676917634 4 2 2 -7.02045433515669 LTS-037 NA NA NA NA LTS-037 chr20 62907522 62959313 51792 * c(LINC00266-1, PCMTD2) NA 0 NA 1.37461332429324 11 0.125607179875848 4 NA NA -5.76834325510897 LTS-037 chr21 9825764 9907271 81508 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.385 1 NA 0.30488617312668 25 0.292145443229909 1 1 0 -5.85658200407727 LTS-037 chr21 9907272 9907427 156 * TEKT4P2 0.266257814022879 7 0.124297837394511 1.14688286620446 15 0.180286544409831 8 6 2 -6.73474183013478 LTS-037 chr21 9907428 11098763 1191336 * c(TEKT4P2, BAGE, TPTE, BAGE3) 0.320524724187629 37 0.104967226402428 0.998399886197036 159 0.5709586889927 3 2 1 -6.81966814211321 LTS-037 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 0.979 1 NA NA NA NA NA LTS-037 chr21 14745307 14756794 11488 * character(0) 0.474 1 NA 1.33450134017376 9 0.932441150958064 4 4 0 -5.76441193894851 LTS-037 chr21 14756795 38132172 23375378 * c(KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3156-3, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, MIR4759, RWDD2B, RNU6-67P, SAMSN1-AS1, OLIG2, USP16, CCT8, BTG3, ADAMTS5, LINC00310, MIR155HG, CYYR1, OLIG1, LINC00161, KRTAP13-1, TCP10L, CHODL, LIPI, ABCC13, CXADR, RCAN1, LINC00189, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, NA NA NA NA NA NA NA NA NA LTS-037 GABPA, LTN1, GART, CLDN17, D21S2088E, LINC00307, LINC00515, KRTAP13-4, GRIK1, N6AMT1, USP25, DONSON, HUNK, HLCS, POTED, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, IL10RB, KCNE1, LINC00317, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 LINC00320, LOC388813, MIR99AHG, KRTAP26-1, ANKRD20A11P, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, ATP5O, RBM11, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, LINC00113, SETD4, NA, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, MAP3K7CL, BACH1, SCAF4, JAM2, EVA1C, SAMSN1, GRIK1-AS1, KRTAP24-1, KRTAP27-1, ITSN1, SIM2, MRPS6, SLC5A3, SOD1, SON, SNORA80A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 HSPA13, TIAM1, KRTAP19-8, LINC01548, TMEM50B, MIR802, RUNX1-IT1, NRIP1, CHAF1B, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, CLDN8, PAXBP1, ADAMTS1, URB1, CRYZL1, DOPEY2, KCNE2) 0.445802749680998 195 0.0740538094435439 1.25631091937629 8946 0.879694611420757 4 2 2 -6.77957123566807 LTS-037 NA NA NA NA LTS-037 chr21 38132173 38378893 246721 * c(HLCS, RIPPLY3) 0.385 1 NA 1.26466675384303 60 0.315181592353031 4 4 0 -5.76663676049965 LTS-037 chr21 38378894 45725715 7346822 * c(MIR3197, DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, DSCR4, DSCR3, B3GALT5, WDR4, HSF2BP, LINC00313, B3GALT5-AS1, CRYAA, CSTB, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, DSCAM, DYRK1A, PLAC4, ERG, ETS2, RRP1B, ICOSLG, DSCR9, NA, BACE2, DSCR10, C2CD2, LINC00323, LINC00319, AATBC, DNMT3L, HMGN1, AIRE, KCNJ6, KCNJ15, LINC00114, MX1, MX2, NDUFV3, ZBTB21, PCP4, PIGP, PDE9A, PFKL, PKNOX1, UBASH3A, RIPPLY3, NA NA NA NA NA NA NA NA NA LTS-037 BRWD1, SLC37A1, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, SH3BGR, TMPRSS3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, TTC3, U2AF1, WRB, C21orf33, DSCR8, PDXK, RRP1, PSMG1, CBS, RSPH1, UMODL1, ABCG1) 0.454447734964272 262 0.054279766037467 1.25501850950172 6599 0.382950647890194 4 2 2 -6.86222120128037 LTS-037 NA NA NA NA LTS-037 chr21 45725716 45726694 979 * PFKL 0.083 1 NA 1.12705980156175 7 0.156586960473969 3 3 0 -5.76461014588043 LTS-037 chr21 45726695 45970384 243690 * c(LRRC3-AS1, TSPEAR-AS2, KRTAP10-1, KRTAP10-2, PFKL, TSPEAR, TRPM2, C21orf2, LRRC3) 0.358763652923353 12 0.100085720835449 1.25672213201807 632 0.298579658170252 3 2 1 -6.79825957893157 LTS-037 chr21 45970385 45971357 973 * c(KRTAP10-2, TSPEAR) 0.475 1 NA 1.50051455443391 16 0.533092170735981 5 5 0 -5.76441866529083 LTS-037 chr21 45971358 48064346 2092989 * c(LOC100129027, ITGB2-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, PRMT2, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PCNT, PCBP3, C21orf58, YBEY, TSPEAR, S100B, LOC642852, SLC19A1, SUMO3, LINC00163, SSR4P1, UBE2G2, PTTG1IP, NA NA NA NA NA NA NA NA NA LTS-037 COL18A1, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.445711270119872 144 0.0577804463682783 1.25132473042899 3080 0.431470297693433 4 2 2 -6.76479500305608 LTS-037 NA NA NA NA LTS-037 chr21 48064347 48084993 20647 * PRMT2 NA 0 NA 1.16266891334559 69 0.289796789931135 3 NA NA -5.76662374342972 LTS-037 chr22 16157787 16157883 97 * character(0) 0.472 1 NA 0.266 1 NA NA NA NA NA LTS-037 chr22 16157884 20305193 4147310 * c(CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, GAB4, C22orf39, TANGO2, COMT, CCT8L2, XKR3, LINC00895, LINC00896, TSSK2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, HSFY1P1, CECR6, CECR5, CECR3, CECR2, LOC284865, GSC2, ZDHHC8, TPTEP1, CCDC188, MIR185, ARVCF, TUBA8, CECR1, ATP6V1E1, DGCR8, GNB1L, PEX26, NA NA NA NA NA NA NA NA NA LTS-037 PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, OR11H1, DGCR6, CLTCL1, DGCR14, CDC45, SLC25A18, DGCR6L, DGCR2) 0.12681783962487 144 0.0666316425335087 0.742362285707671 4498 0.25152595133945 2 2 0 -6.75174664350968 LTS-037 NA NA NA NA LTS-037 chr22 20305194 20305282 89 * DGCR6L NA 0 NA 0.745 1 NA NA NA NA NA LTS-037 chr22 20305283 20398710 93428 * c(TMEM191B, PI4KAP1, NA, DGCR6L) NA 0 NA 0.292333547521683 39 0.216963074527676 1 NA NA -5.99261446159784 LTS-037 chr22 20398711 20717834 319124 * c(PI4KAP1, RIMBP3) NA 0 NA 0.967 1 NA NA NA NA NA LTS-037 chr22 20717835 24340955 3623121 * c(DDTL, MIR301B, IGLL5, TUBA3FP, ZNF280A, CRKL, ZNF280B, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, SDF2L1, PPIL2, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, RSPH14, GNAZ, MIF-AS1, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC74B, BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, PI4KA, MAPK1, BCR, TMEM191C, LL22NC03-63E9.3, CES5AP1, SLC7A4, SMARCB1, NA NA NA NA NA NA NA NA NA LTS-037 SLC2A11, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20) 0.138222288012693 147 0.0641867317987071 0.735412639405807 4402 0.241208740840141 2 2 0 -6.81393536619788 LTS-037 NA NA NA NA LTS-037 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.477 1 NA NA NA NA NA LTS-037 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.46701937664951 57 0.427061948544631 5 NA NA -5.76545633741969 LTS-037 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.591 1 NA NA NA NA NA LTS-037 chr22 24400149 36206099 11805951 * c(LOC100128531, MIR548J, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, MIR4764, ZNRF3-AS1, SF3A1, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, CHEK2, PIK3IP1, SGSM1, EMID1, ADORA2A, SELENOM, CRYBA4, CRYBB1, CRYBB2, CRYBB2P1, CRYBB3, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, GRK3, AP1B1, CABP7, RNF215, EWSR1, MORC2, TTC28, SPECC1L, PES1, CABIN1, SEC14L2, NA NA NA NA NA NA NA NA NA LTS-037 RBFOX2, SEZ6L, RASD2, PATZ1, PITPNB, PISD, OSBP2, AP1B1P1, TFIP11, PRR14L, BPIFC, TMEM211, C22orf31, C22orf24, FBXO7, RHBDD3, SEC14L3, GGT1, GGT5, INPP5J, TTC28-AS1, SEC14L4, POM121L9P, UQCR10, HMOX1, SLC35E4, LOC339666, SDC4P, LRRC75B, LIF, LIMK2, SRRD, MB, MCM5, MN1, PIWIL3, MIAT, DRG1, NEFH, NF2, OSM, PLA2G3, RTCB, MTFP1, UPB1, TUG1, CCDC157, ZMAT5, SUSD2, EIF4ENIF1, ASPHD2, RFPL1, BCRP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ADORA2A-AS1, POM121L10P, SLC5A1, SMTN, SLC5A4, GATSL3, GSTTP2, SNRPD3, TCN2, TIMP3, TOP1P2, SEC14L6, XBP1, YWHAH, APOL6, APOL5, SYN3, GUCD1, TBC1D10A, KREMEN1, ZNRF3, ASCC2, TPST2, MYO18B, NIPSNAP1, KIAA1656, KIAA1671, THOC5, MTMR3, HPS4, IGLL3P, LRP5L, RNF185, ISX, LARGE1, GAL3ST1, DEPDC5, SFI1) 0.125359701423295 199 0.0557566418145973 0.731604392641169 10618 0.274443660625057 2 2 0 -6.77464626916739 LTS-037 NA NA NA NA LTS-037 chr22 36206100 36217726 11627 * RBFOX2 NA 0 NA 1.573 1 NA NA NA NA NA LTS-037 chr22 36217727 36678817 461091 * c(RBFOX2, APOL2, MYH9, APOL4, APOL3, APOL1) 0.0536905131003447 6 0.0157945138154571 1.20581303701821 369 0.296284510229814 5 5 0 -6.97578687281582 LTS-037 chr22 36678818 36680059 1242 * MYH9 NA 0 NA 0.827 1 NA NA NA NA NA LTS-037 chr22 36680060 51183255 14503196 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR3201, MIR3619, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4535, EFCAB6-AS1, APOBEC3A_B, DNAL4, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, PACSIN2, PHF21B, KLHDC7B, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, ANKRD54, CPT1B, APOBEC3D, CSF2RB, CSNK1E, NA NA NA NA NA NA NA NA NA LTS-037 ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, ADSL, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, CYB5R3, TYMP, APOBEC3A, APOBEC3F, EP300, FBLN1, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, GCAT, CBX6, NPTXR, CBX7, SLC16A8, MAPK8IP2, SH3BP1, PLXNB2, MAFF, BRD1, ARHGAP8, SERHL2, XRCC6, TBC1D22A, CBY1, SUN2, TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SULT4A1, GGA1, RIBC2, ARFGAP3, RNU12, ATP5L2, SNORD43, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, LOC284933, CARD10, PARVB, NCAPH2, H1F0, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, CHKB-CPT1B, OGFRP1, LINC00207, LGALS1, LGALS2, LOC400927, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, PIM3, MFNG, MGAT3, MPST, SHISA8, ODF3B, MYH9, NAGA, ATF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 NCF4, NDUFA6, SNU13, ACR, ACO2, EIF3L, GTSE1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, SEPT3, MAPK11, PANX2, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SOX10, SREBF2, SSTR3, ST13, TCF20, TEF, TSPO, MIR658, MIR659, TST, LOC730668, UPK3A, WNT7B, MPPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, FOXRED2, BAIAP2L2, SCUBE1, TRABD, PNPLA3, SELENOO, L3MBTL2, HDAC10, PLA2G6, LDOC1L, POLDIP3, C22orf23, GALR3, PHF5A, KIAA1644, SHANK3, MICALL1, TUBGCP6, EIF3D, CACNA1I, NA, LMF2, SYNGR1, RPS19BP1, SMDT1, RRP7BP, SERHL, GRAP2, PICK1, GTPBP1, APOBEC3B, CELSR1, PPP6R2, ZBED4, JOSD1, RBX1, SCO2) 0.116843677377037 485 0.0465102110010042 0.719992777889038 18758 0.21666483524703 2 2 0 -6.9070497197936 LTS-037 NA NA NA NA LTS-037 chr22 51183256 51220846 37591 * c(RABL2B, RPL23AP82, ACR) NA 0 NA 0.624856503499496 71 0.288221825900734 2 NA NA -5.77249909471445 LTS-037 chrX 2699993 2800295 100303 * c(XG, GYG2) 0.151 1 NA 0.705021262265005 129 0.148774646596661 2 2 0 -5.77175848260826 LTS-037 chrX 2800296 11790282 8989987 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4, GYG2) 0.0937101078318478 39 0.0420968775387857 0.768321117660201 2591 0.231605057349248 2 2 0 -6.99694084451045 LTS-037 chrX 11790283 13787348 1997066 * c(GS1-600G8.3, LINC01203, MSL3, TCEANC, FAM9C, EGFL6, TLR8-AS1, TLR7, TLR8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.118347597170019 15 0.0262859730836121 0.688617715931437 1054 0.163600316666301 2 2 0 -6.98784909178695 LTS-037 chrX 13787349 13787371 23 * OFD1 NA 0 NA 0.973 1 NA NA NA NA NA LTS-037 chrX 13787372 46541833 32754462 * c(SUPT20HL1, PHKA2-AS1, LOC100132831, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, ATP6AP2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, FUNDC1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, CXorf38, DDX3X, DDX53, FAM47B, NA, SUPT20HL2, ARX, DMD, NR0B1, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, NA NA NA NA NA NA NA NA NA LTS-037 MAP7D2, KLHL34, TAB3, HYPM, GK, GPR82, GLRA2, GPM6B, GPR34, LINC01281, CFAP47, MAGEB18, GRPR, SH3KBP1, CA5BP1, LANCL3, MPC1L, DCAF8L2, MAGEB5, MAP3K15, LOC392452, ZNF674-AS1, YY2, MIR221, MIR222, MAGEB1, MAGEB2, MAGEB3, MAGEB4, MAOA, MAOB, FTH1P18, FAM47C, NDP, NHS, OTC, MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, BCOR, GEMIN8, KRBOX4, TXLNG, PRRG1, CTPS2, CHST7, TMEM27, MID1IP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 ACE2, RBBP7, NYX, RPGR, RPS6KA3, RS1, SAT1, SCML1, DUSP21, ZNF674, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, DYNLT3, TSPAN7, LOC729609, KDM6A, XK, ZFX, APOO, S100G, CXorf36, CXorf21, EFHC2, KLHL15, PPP1R2P9, ZRSR2, USP9X, TMEM47, SRPX, SLC9A7, OFD1, PIR, INE2, CASK, AP1S2, REPS2, MED14, SYAP1, SYTL5, PCYT1B) 0.110194183798498 90 0.041531422455606 0.75333492812497 12231 0.199746327689901 2 2 0 -6.83973425031147 LTS-037 NA NA NA NA LTS-037 chrX 46541834 53250981 6709148 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, ELK1, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, GPR173, NA NA NA NA NA NA NA NA NA LTS-037 NDUFB11, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, RP2, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, LINC01545, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, UXT, SLC9A7, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 RGN, BMP15, SLC38A5, MAGED1, PAGE4, JADE3) 0.103795702805899 26 0.0451008442697712 0.802057957313261 5934 0.2064005937737 2 2 0 -7.28289378972499 LTS-037 NA NA NA NA LTS-037 chrX 53250982 55172675 1921694 * c(HUWE1, MAGED2, RIBC1, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, PFKFB1, GNL3L, FAM120C, WNK3, SNORA11, TRO, KDM5C, SMC1A, TSR2, FAM104B) 0.140215992290022 10 0.0606070219620723 0.761288783003476 2602 0.167591686039069 2 2 0 -6.85994613351751 LTS-037 chrX 55172676 55172687 12 * FAM104B 0.228 1 NA 0.638035022367778 3 0.162315536327652 2 2 0 -5.76441591125784 LTS-037 chrX 55172688 57934577 2761890 * c(MTRNR2L10, MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA, FAM104B, PAGE5) 0.198635386126276 16 0.0933664598950465 0.731000343653002 786 0.211509013089537 2 2 0 -7.18848174104703 LTS-037 chrX 57934578 57937169 2592 * ZXDA NA 0 NA 0.686542024352434 47 0.183697437056505 2 NA NA -5.76469458545395 LTS-037 chrX 61999880 64743612 2743733 * c(MIR1468, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MTMR8, ZC4H2, LAS1L, LINC01278) 0.171 1 NA 0.762545290366966 773 0.161596819616836 2 2 0 -5.80807904403498 LTS-037 chrX 64743613 117044062 52300450 * c(MIR374B, ARMCX4, UBE2DNL, LINC00630, MIR1912, MIR1298, MIR1911, MIR1264, FTX, MIR764, TRPC5OS, MIR4328, MIR4329, MIR374C, MIR676, ARMCX5-GPRASP2, RPL36A-HNRNPH2, MIR3978, CDX4, CYSLTR1, TMSB15A, MID2, CHM, SLC6A14, VSIG4, GPRASP2, ATG4A, DACH2, COL4A5, COL4A6, COX7B, MAP2K4P1, PIH1D3, MUM1L1, FAM199X, APOOL, HDX, OTUD6A, UPRT, MAGEE2, RBMXL3, TCEAL2, PABPC5, RAB40A, CSTF2, CYLC1, AMOT, CXorf65, AWAT1, NA NA NA NA NA NA NA NA NA LTS-037 AWAT2, ZDHHC15, TCEAL6, H2BFWT, DCX, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, TSC22D3, AGTR2, EDA, EFNB1, CT83, ZCCHC5, NRK, TMEM31, ACSL4, ABCB7, KCNE5, KIF4A, CENPI, BRWD3, IL1RAPL2, ITGB1BP2, BEX3, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, RAB40AL, CXCR3, LPAR4, H2BFM, LOC286437, YIPF6, TTC3P1, FAM133A, TMSB15B, GUCY2F, SNX12, RPA4, HNRNPH2, HTR2C, RGAG4, NHSL2, PABPC1L2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 KIAA2022, BEX5, TCEAL5, MORF4L2-AS1, VSIG1, SATL1, ZCCHC16, LHFPL1, DGAT2L6, RAB41, IGBP1, IL2RG, IL13RA2, AR, ZCCHC13, FLJ44635, ARL13A, SLC25A53, LINC00890, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, GLRA4, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, PAK3, TBX22, RLIM, TCEAL9, RAB9B, LUZP4, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 CHIC1, PLP1, PLS3, ATP7A, NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, NUP62CL, GDPD2, TBC1D8B, CXorf57, RBM41, JPX, MIR448, BEX1, HDAC8, NXT2, NXF5, NXF4, NXF3, KLHL4, TEX13B, TEX13A, TEX11, BEX4, PRPS1, TCEAL7, PSMD10, PCDH19, RGAG1, LRCH2, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, ZCCHC18, SH3BGRL, PABPC1L2B, NAP1L6, ARMCX5, FAM226B, SLC16A2, MIR545, SNORA35, TAF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 SERPINA7, SNORD96B, MIR421, BTK, TDGF1P3, TSPAN6, TRPC5, XIST, ZNF711, HMGN5, RNF128, MORC4, ALG13, TCEAL4, TRMT2B, POF1B, ESX1, BHLHB9, LAS1L, CAPN6, FRMD8P1, MAGT1, TMEM164, ZMAT1, GPR174, BEX2, IRS4, OGT, SLC7A3, TCEAL3, FGF16, KLHL13, TGIF2LX, CLDN2, TCEAL8, CHRDL1, ZMYM3, RIPPLY1, TCEAL1, TSIX, ACRC, SYTL4, ITM2A, MORF4L2, GPRASP1, STARD8, ARMCX2, HEPH, AMMECR1, MED12) 0.108566490764069 190 0.0471821818550222 0.768787786869902 19312 0.224208342876386 2 2 0 -7.4104679943197 LTS-037 NA NA NA NA LTS-037 chrX 117044063 139793912 22749850 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, MIR1277, SLC25A5-AS1, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, DCAF12L1, ADGRG4, ACTRT1, GPR119, DOCK11, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, FAM122B, FAM122C, ZCCHC12, ELF4, SLC25A43, INTS6L, ZNF449, F9, GPC4, FGF13, FHL1, SEPT6, ATP1B4, CT47A11, FAM127B, SNORA69, SNORD61, GPC3, RBMX, HTATSF1, NA NA NA NA NA NA NA NA NA LTS-037 GLUD2, ATP11C, LINC00632, FIRRE, GRIA3, MCTS1, C1GALT1C1, SLC25A5, HPRT1, XIAP, DCAF12L2, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, LOC389895, LAMP2, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, WDR44, CT55, TMEM255A, MIR450A1, SAGE1, ZNF280C, MBNL3, NKRF, MOSPD1, THOC2, MIR363, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RAP2C, RPL39, BCORL1, CXorf56, CT47B1, SMIM10, SMIM10L2B, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, SRD5A1P1, BRS3, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, MAP7D3, LONRF3, GPR101, USP26, PHF6, CUL4B, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, AIFM1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MMGT1, RAB33A, ARHGEF6, CD40LG) 0.109644206615928 77 0.0443990903147713 0.745892618683323 9507 0.30748260597856 2 2 0 -6.74456731372323 LTS-037 NA NA NA NA LTS-037 chrX 139793913 139795669 1757 * LINC00632 NA 0 NA 0.931 1 NA NA NA NA NA LTS-037 chrX 139795670 154507173 14711504 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, SMIM9, CXorf51B, CMC4, LINC00894, NA, NA, MIR320D2, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CDR1, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, GAB3, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, NA, DKC1, DNASE1L1, DUSP9, EMD, NA NA NA NA NA NA NA NA NA LTS-037 VMA21, ABCD1, F8, FLNA, FMR1, AFF2, LDOC1, G6PD, GABRA3, GABRE, OPN1MW, SRPK3, GDI1, SNORA70, LINC00632, PNMA3, HCFC1, CTAG2, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, MPP1, SPANXN4, MTCP1, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, NA NA NA NA NA NA NA NA NA NA NA NA LTS-037 MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, SPANXA2-OT1, BGN, SPANXC, SLC6A8, FUNDC2, SSR4, SNORA36A, SNORA56, TAZ, VBP1, MIR767, ZNF185, PRRG3, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, CD99L2, TMEM185A, SLITRK2, IKBKG, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.122327364356164 128 0.0735058098700073 0.775606673815141 8659 0.268090941474459 2 2 0 -6.96176179396656 LTS-037 NA NA NA NA LTS-037 chrX 154507174 154528275 21102 * CLIC2 NA 0 NA 0.694077793317738 25 0.119868636431721 2 NA NA -5.76844146750329 LTS-037 chrX 154528276 154528281 6 * CLIC2 NA 0 NA 0.614 1 NA NA NA NA NA LTS-037 chrX 154528282 154580169 51888 * CLIC2 NA 0 NA 0.254148376464972 40 0.310069715072479 0 NA NA -5.81510427062476 LTS-037 chrX 154580170 154774986 194817 * TMLHE NA 0 NA 1.33571674829815 39 5.07004721967327 4 NA NA -5.76441129833699 LTS-037 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.24581826233276 27 0.254976067252977 0 NA NA -6.50258742097771 LTS-037 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.435416013580637 19 0.376202104448942 1 NA NA -5.83949030005568 LTS-037 chr1 65893 881627 815735 * c(LOC100130417, LOC100288069, SAMD11, NOC2L, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.179 1 NA 0.934269865785815 133 0.242806863437447 3 3 0 -5.87611320115988 LTS-038 chr1 881628 1564712 683085 * c(ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, TMEM88B, FNDC10, VWA1, TNFRSF4, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.11865149783168 46 0.0544956143251577 0.922960427147066 2668 0.312920470483147 3 3 0 -6.89875730529804 LTS-038 chr1 1564713 1575836 11124 * c(MIB2, MMP23B, CDK11B) 0.448 1 NA 1.0381744928882 67 0.404980959511323 3 3 0 -5.76441563894584 LTS-038 chr1 1575837 1593816 17980 * c(SLC35E2B, CDK11B) 0.368374307487578 7 0.105484144599578 0.860816280849993 93 0.391844851990926 3 2 1 -6.74247409514036 LTS-038 chr1 1593817 1608229 14413 * c(SLC35E2B, CDK11B) 0.139124784041346 6 0.0132463831541544 1.32214642253843 120 1.00441151576294 3 3 0 -6.74189403165985 LTS-038 chr1 1608230 1608309 80 * c(SLC35E2B, CDK11B) NA 0 NA 1.228 1 NA NA NA NA NA LTS-038 chr1 1608310 1630371 22062 * c(SLC35E2B, CDK11B) NA 0 NA 0.007 1 NA NA NA NA NA LTS-038 chr1 1630372 1638993 8622 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) NA 0 NA 0.501663887310376 70 0.311579961256703 1 NA NA -5.76481104007416 LTS-038 chr1 1638994 1646682 7689 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.231903545738699 46 0.224193541301601 0 NA NA -5.76979945452408 LTS-038 chr1 1646683 1647814 1132 * c(CDK11A, SLC35E2B, CDK11B) 0.412 1 NA 0.806049137872076 3 0.284651248606665 2 2 0 -5.76441083302993 LTS-038 chr1 1647815 1650967 3153 * c(CDK11A, SLC35E2B, CDK11B) 0.437096123566398 10 0.0496795285359629 0.904220157402636 18 0.213474133988999 2 1 1 -6.74841087409363 LTS-038 chr1 1650968 1658945 7978 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.247 1 NA 0.662555904150289 29 0.228891949684872 2 2 0 -5.7675998725808 LTS-038 chr1 1658946 1670476 11531 * c(SLC35E2B, SLC35E2) 0.179988908081605 5 0.0551244047586911 0.519440463171661 83 0.259168319906009 2 2 0 -6.75700881907152 LTS-038 chr1 1670477 1670973 497 * c(SLC35E2B, SLC35E2) NA 0 NA 1.094 1 NA NA NA NA NA LTS-038 chr1 1670974 7827785 6156812 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-038 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.13557173463661 101 0.0358724003784371 0.925899135795351 5441 0.418624441543862 3 3 0 -7.06291456031873 LTS-038 NA NA NA NA LTS-038 chr1 7827786 7897236 69451 * c(CAMTA1, PER3, VAMP3) NA 0 NA 1.24763823137167 203 0.438418393882402 4 NA NA -5.76480326704298 LTS-038 chr1 7897237 7902658 5422 * PER3 NA 0 NA 0.833 1 NA NA NA NA NA LTS-038 chr1 7902659 9027896 1125238 * c(ENO1-AS1, UTS2, PARK7, ENO1, TNFRSF9, RERE, SLC45A1, ERRFI1, CA6, PER3) 0.116259410766978 7 0.0410644093380839 1.00149596501322 665 0.342309767879086 3 3 0 -6.95131146961547 LTS-038 chr1 9027897 9030865 2969 * CA6 NA 0 NA 0.651 1 NA NA NA NA NA LTS-038 chr1 9030866 9064824 33959 * c(SLC2A7, CA6) NA 0 NA 0.495046897788656 40 0.148362426562067 1 NA NA -5.77365679759906 LTS-038 chr1 9064825 12423294 3358470 * c(NPPA-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, RBP7, CLCN6, CORT, C1orf127, SLC2A7, DFFA, TMEM201, CLSTN1, KIF1B, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, DRAXIN, CENPS, MIR34A, MTHFR, NPPA, NPPB, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, CASZ1, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NMNAT1, SLC2A5, SRM, TNFRSF1B, GPR157, SPSB1, SLC25A33, LZIC, KIAA2013, FBXO44, TNFRSF8, NA NA NA NA NA NA NA NA NA LTS-038 H6PD, MFN2) 0.140331493794528 135 0.0377488968717754 0.874785538688872 5483 0.320558428044825 3 3 0 -7.32618819619735 LTS-038 NA NA NA NA LTS-038 chr1 12423295 12428514 5220 * VPS13D NA 0 NA 1.183 1 NA NA NA NA NA LTS-038 chr1 12428515 12571933 143419 * c(VPS13D, SNORA59B) NA 0 NA 1.16648910582356 160 0.298627632500882 3 NA NA -5.77501028927301 LTS-038 chr1 12571934 12823667 251734 * c(AADACL3, AADACL4, VPS13D, DHRS3, C1orf158) 0.148100159043716 8 0.0532713739799743 0.745339097195756 261 0.243275160554875 2 2 0 -7.02024159641998 LTS-038 chr1 12823668 12907385 83718 * c(HNRNPCL1, PRAMEF12, PRAMEF11, HNRNPCL3, PRAMEF1) 0.261 1 NA 0.70768465915972 63 0.223124259613012 2 2 0 -5.77914947954462 LTS-038 chr1 12907386 13183973 276588 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.352399644139114 13 0.0495288053974913 0.867960503388162 65 0.326735027024369 3 2 1 -6.9634666780396 LTS-038 chr1 13183974 13802437 618464 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, NA, HNRNPCL2, PRAMEF19, PRAMEF20, NA) 0.125 1 NA 0.66001204681597 37 0.647891253665749 1 1 0 -5.79535574169463 LTS-038 chr1 13802438 14042264 239827 * c(PDPN, LRRC38, PRDM2) 0.18402650747836 7 0.0378505834389203 0.770485710220105 136 0.338277169023847 2 2 0 -6.73506271976219 LTS-038 chr1 14042265 14049220 6956 * PRDM2 NA 0 NA 1.177 1 NA NA NA NA NA LTS-038 chr1 14049221 16384499 2335279 * c(CTRC, FHAD1, CLCNKA, CLCNKB, C1orf64, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, HSPB7, SLC25A34, FAM131C, TMEM82, UQCRHL, CELA2B, FBLIM1, TMEM51, RSC1A1, CELA2A, FLJ37453, ZBTB17, PRDM2, EFHD2, AGMAT, CASP9, DDI2) 0.152537859045949 80 0.0625848234525135 0.921189920633319 2427 0.585242446977908 3 3 0 -6.82402792600177 LTS-038 chr1 16384500 16384558 59 * FAM131C 0.395 1 NA 0.933729977206963 3 0.367323200102217 3 3 0 -5.76441370538562 LTS-038 chr1 16384559 16975831 591273 * c(MST1P2, CROCCP3, ARHGEF19, EPHA2, SZRD1, FAM131C, SPATA21, FBXO42, NBPF1, NECAP2, RSG1, CROCCP2) 0.331929184891419 35 0.12156817086749 0.938663447942356 836 0.309730524654512 3 2 1 -6.86986966811578 LTS-038 chr1 16975832 16975852 21 * MST1P2 NA 0 NA 0.441 1 NA NA NA NA NA LTS-038 chr1 16975853 16978916 3064 * MST1P2 0.24400672160398 9 0.126850305478544 0.30876971115488 88 0.261229803657056 1 1 0 -6.76706703387757 LTS-038 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.439 1 NA NA NA NA NA LTS-038 chr1 17009684 17273493 263810 * c(MST1L, ESPNP, CROCC) 0.312706425456539 51 0.109482117798511 1.40779365143969 395 0.673527991000892 4 3 1 -6.73695037459868 LTS-038 chr1 17273494 17298210 24717 * CROCC NA 0 NA 1.14446498279505 99 0.377320455636866 3 NA NA -5.76517760508127 LTS-038 chr1 17298211 17298750 540 * CROCC NA 0 NA 0.935 1 NA NA NA NA NA LTS-038 chr1 17298751 17393889 95139 * c(PADI2, ATP13A2, MFAP2, SDHB, CROCC) 0.131 1 NA 0.93220197613249 255 0.446656362394653 3 3 0 -5.76847967850898 LTS-038 chr1 17393890 25599164 8205275 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4695, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, PADI2, LYPLA2, CNR2, IFFO2, MYOM3, KLHDC7A, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, PADI4, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, PADI1, PLA2G2E, NA NA NA NA NA NA NA NA NA LTS-038 HMGCL, HSPG2, HTR1D, HTR6, LINC01141, ID3, PADI6, PLA2G2C, SH2D5, NCMAP, LDLRAD2, MINOS1, NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, ARHGEF10L, CAMK2N1, ASAP3, PNRC2, RCC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RHD, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, TAS1R2, ACTL8, CAPZB, USP48, NBPF3, IGSF21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 AKR7A2, RUNX3, ALDH4A1, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.147065384870044 248 0.0439907940017247 0.89403344180946 10009 0.334420164515885 2 2 0 -7.66213019550759 LTS-038 NA NA NA NA LTS-038 chr1 25599165 25656954 57790 * c(RSRP1, RHD) NA 0 NA 0.229360270559031 73 0.105457395077634 0 NA NA -5.95830837517956 LTS-038 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.895 1 NA NA NA NA NA LTS-038 chr1 25666924 32677777 7010854 * c(MATN1-AS1, MIR1976, MIR4254, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, KHDRBS1, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, DCDC2B, LINC01225, PDIK1L, PAQR7, FAM76A, TXLNA, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, KPNA6, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HMGN2, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, MATN1, OPRD1, NA NA NA NA NA NA NA NA NA LTS-038 PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM39B, TMEM57, PEF1, PIGV, IQCC, MTFR1L, MAN1C1, SELENON, PTAFR, ADGRB2, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, SLC30A2, LAPTM5, AUNIP, CCDC28B, NKAIN1, LIN28A, FAM110D, DHDDS, PTP4A2, ARID1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, MAP3K6, SPOCD1, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.146394853898554 162 0.0582785631338114 0.886665547322854 8619 0.305736606825742 2 2 0 -7.44024186327962 LTS-038 NA NA NA NA LTS-038 chr1 32677778 32678038 261 * DCDC2B NA 0 NA 0.733 1 NA NA NA NA NA LTS-038 chr1 32678039 33116103 438065 * c(FAM229A, DCDC2B, HDAC1, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM234, MARCKSL1, ZBTB8A, ZBTB8B, TSSK3, FAM167B, EIF3I) 0.163386651837114 2 0.045254833995939 0.784475600896837 670 0.292348089451097 2 2 0 -6.86796487845492 LTS-038 chr1 33116104 33207810 91707 * c(ZBTB8OS, KIAA1522, RBBP4, SYNC) NA 0 NA 0.758790597677644 137 0.24608955095428 2 NA NA -5.7667990844045 LTS-038 chr1 33207811 33219661 11851 * KIAA1522 NA 0 NA 1.395 1 NA NA NA NA NA LTS-038 chr1 33219662 33235626 15965 * KIAA1522 0.491 1 NA 1.54702489777686 35 0.465968462884948 5 5 0 -5.76441090766366 LTS-038 chr1 33235627 34498408 1262782 * c(MIR3605, AZIN2, TMEM54, CSMD2, HMGB4, RNF19B, A3GALT2, ZNF362, PHC2, AK2, FNDC5, HPCA, CSMD2-AS1, TRIM62, KIAA1522, S100PBP, ZSCAN20, YARS) 0.349603166936526 18 0.115676978689335 1.34136772018124 1609 0.380084962524152 4 3 1 -6.81901373979611 LTS-038 chr1 34498409 34554620 56212 * CSMD2 NA 0 NA 0.872 1 NA NA NA NA NA LTS-038 chr1 34554621 39957432 5402812 * c(MIR4255, MIR3659, TMEM35B, GJA9-MYCBP, MIR5581, SF3A3, SMIM12, CSMD2, GJB4, C1orf122, OSCP1, C1orf216, COL8A2, CSF3R, MANEAL, AGO3, AGO4, FHL3, NCDN, MACF1, MYCBP, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, TFAP2E, BMP8A, INPP5B, MTF1, NDUFS5, UTP11, POU3F1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, MAP7D1, PSMB2, DLGAP3, CLSPN, RRAGC, SFPQ, KIAA0754, MEAF6, NA NA NA NA NA NA NA NA NA LTS-038 MRPS15, LOC653160, LINC01137, DNALI1, AKIRIN1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, LSM10, C1orf94, ZMYM4, ZMYM6, THRAP3) 0.355329631144065 82 0.0635469712492525 1.04199886628734 6017 0.340045657741863 3 2 1 -6.82035491856791 LTS-038 NA NA NA NA LTS-038 chr1 39957433 39987124 29692 * BMP8A 0.341 1 NA 0.591143125461155 46 0.412397353060849 1 1 0 -5.76503728883634 LTS-038 chr1 39987125 39987921 797 * BMP8A NA 0 NA 1.284 1 NA NA NA NA NA LTS-038 chr1 39987922 44788561 4800640 * c(LOC100129924, NFYC-AS1, KDM4A-AS1, SLFNL1-AS1, ZMPSTE24, PPIE, PPIH, CAP1, EBNA1BP2, MED8, ERMAP, TMCO2, ZNF684, KLF17, TMEM125, COL9A2, CLDN19, CFAP57, C1orf210, CCDC24, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FOXJ3, SCMH1, SZT2, HEYL, RIMKLA, GUCA2A, GUCA2B, ZFP69, BMP8A, SVBP, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MYCL, NFYC, YBX1, ZNF691, HPCAL4, ATP6V0B, TRIT1, PPT1, DMAP1, PTPRF, HIVEP3, NA NA NA NA NA NA NA NA NA LTS-038 RLF, OXCT2, P3H1, SMAP2, EXO5, ELOVL1, ST3GAL3, SLC2A1, ZFP69B, SLC6A9, BMP8B, SNORA55, TIE1, PPIEL, CCDC30, ERI3, C1orf50, PPCS, HYI, ZMYND12, NT5C1A, MFSD2A, B4GALT2, PABPC4, ARTN, KCNQ4, IPO13, KDM4A, RIMS3, CDC20) 0.358365730163748 93 0.0523996893381082 1.09156464043772 6152 0.350815489626012 3 2 1 -6.86358083910807 LTS-038 NA NA NA NA LTS-038 chr1 44788562 44788584 23 * ERI3 NA 0 NA 1.523 1 NA NA NA NA NA LTS-038 chr1 44788585 45243858 455274 * c(MIR5584, KIF2C, SNORD55, C1orf228, RNF220, RPS8, ERI3, TMEM53, SNORD46, SNORD38A) 0.338 1 NA 1.28212692031337 421 0.375840686602302 4 4 0 -5.76486381720249 LTS-038 chr1 45243859 45250007 6149 * c(BEST4, RPS8, SNORD38B) 0.303 1 NA 1.18446814833498 25 0.268860478067467 4 4 0 -5.76486623991129 LTS-038 chr1 45250008 47768023 2518016 * c(EFCAB14-AS1, MKNK1-AS1, LINC00853, TSPAN1, PDZK1IP1, AKR1A1, TESK2, LRRC41, TOE1, PLK3, CCDC163, DMBX1, KNCN, MOB3C, BTBD19, CCDC17, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, FAAH, MAST2, MMACHC, CYP4X1, BEST4, CYP4A22, TCTEX1D4, IPP, TEX38, NSUN4, LINC01144, MUTYH, NASP, PRDX1, TMEM69, LURAP1, POMGNT1, ZSWIM5, GPBP1L1, ATPAF1, STIL, TAL1, RPS15AP10, FAAHP1, UQCRH, UROD, HECTD3, RAD54L, HPDL, PIK3R3, MKNK1, NA NA NA NA NA NA NA NA NA LTS-038 PTCH2, EIF2B3, EFCAB14) 0.272287984347599 88 0.0498758332870891 1.29710342042677 3766 0.446330658843177 4 3 1 -7.00639301313135 LTS-038 NA NA NA NA LTS-038 chr1 47768024 47770538 2515 * STIL NA 0 NA 0.888 1 NA NA NA NA NA LTS-038 chr1 47770539 47904675 134137 * c(FOXE3, FOXD2, CMPK1, STIL, FOXD2-AS1) 0.316985630459155 8 0.170785527573537 1.02925800447523 212 0.458218630885326 4 3 1 -6.75628719601953 LTS-038 chr1 47904676 49049675 1145000 * c(SLC5A9, FOXD2, TRABD2B, SKINT1L, SPATA6, AGBL4) 0.453 1 NA 1.07093638312813 392 0.402620544411214 3 3 0 -5.76601115303933 LTS-038 chr1 49049676 50666618 1616943 * c(ELAVL4, BEND5, AGBL4) 0.463302802410554 4 0.0232737334062816 1.04064085735933 263 0.309943813602773 4 2 2 -7.55496994207627 LTS-038 chr1 50666619 52975430 2308812 * c(MIR761, CDKN2C, FAF1, KTI12, OSBPL9, ELAVL4, CC2D1B, EPS15, TTC39A, ZCCHC11, RNF11, C1orf185, NRDC, ORC1, TXNDC12, RAB3B, DMRTA2, PRPF38A, BTF3L4, ZFYVE9) 0.469685703189123 3 0.0165227116418583 1.27653988537604 2294 0.482459071465245 4 2 2 -7.85067371483967 LTS-038 chr1 52975431 52980724 5294 * ZCCHC11 NA 0 NA 0.753 1 NA NA NA NA NA LTS-038 chr1 52980725 53514631 533907 * c(ZCCHC11, GPX7, FAM159A, ZYG11A, ECHDC2, SCP2, COA7, ZYG11B) 0.421767236143488 15 0.0655644357719583 1.10110065034498 673 0.517031192322196 4 2 2 -6.84020729963976 LTS-038 chr1 53514632 54432019 917388 * c(LOC100507564, LRRC42, PODN, CPT2, GLIS1, SLC25A3P1, DIO1, MAGOH, HSPB11, YIPF1, C1orf123, NDC1, SCP2, DMRTB1, SLC1A7, LRP8) 0.447644617667492 42 0.0346868938354084 1.32641902109909 1000 0.423630695730804 4 2 2 -6.73786907588611 LTS-038 chr1 54432020 54433557 1538 * LRRC42 NA 0 NA 1.29741862373385 12 0.232473849946808 4 NA NA -5.76441033906594 LTS-038 chr1 54433558 54474403 40846 * c(LRRC42, LDLRAD1) 0 1 NA 0.998881055631181 7 0.9651802693699 3 3 0 -5.76447646579575 LTS-038 chr1 54474404 55104360 629957 * c(MIR4781, TCEANC2, CDCP2, SSBP3, ACOT11, FAM151A, LDLRAD1, MRPL37, CYB5RL, TMEM59) 0.150974136985989 9 0.0380164438105407 0.882717057229015 668 0.315675503116029 3 3 0 -6.8890800595429 LTS-038 chr1 55104361 55104464 104 * character(0) NA 0 NA 0.721 1 NA NA NA NA NA LTS-038 chr1 55104465 55518089 413625 * c(MROH7-TTC4, LEXM, DHCR24, TMEM61, PCSK9, PARS2, MROH7, TTC22, TTC4, BSND) 0.174193141530588 35 0.0523197987815111 0.776800072396653 770 0.273350387285202 2 2 0 -6.7611348125711 LTS-038 chr1 55518090 55518252 163 * PCSK9 NA 0 NA 1.174 1 NA NA NA NA NA LTS-038 chr1 55518253 57340727 1822475 * c(LOC100507634, MIR4422, C1orf168, USP24, PCSK9, PRKAA2, C8A, PLPP3) 0.173000191639193 18 0.0601679566425182 0.930110010136746 903 0.325724930176165 2 2 0 -6.98682232987809 LTS-038 chr1 57340728 57395315 54588 * c(C8A, C8B) NA 0 NA 0.822096797448259 69 0.198343611961155 2 NA NA -5.76510276133274 LTS-038 chr1 57395316 57397374 2059 * C8B NA 0 NA 0.528 1 NA NA NA NA NA LTS-038 chr1 57397375 59096045 1698671 * c(OMA1, DAB1, TACSTD2, C8B) 0.331 1 NA 0.619524289509059 249 0.160459449013827 1 1 0 -6.32082960061877 LTS-038 chr1 59096046 59096250 205 * character(0) 0.454717153595893 9 0.0339832475068395 0.655386093902797 13 0.309473332598697 2 1 1 -6.78280835028004 LTS-038 chr1 59096251 59148219 51969 * MYSM1 NA 0 NA 0.593202974992604 183 0.283392802509205 1 NA NA -5.7669475645915 LTS-038 chr1 59148220 59150808 2589 * MYSM1 NA 0 NA 0.919 1 NA NA NA NA NA LTS-038 chr1 59150809 59364918 214110 * c(LINC01135, MYSM1, JUN) 0.2 1 NA 0.878093620571157 117 0.30912630104385 2 2 0 -5.77645247809071 LTS-038 chr1 59364919 65280547 5915629 * c(LINC01135, MIR4794, MIR4711, PATJ, C1orf87, UBE2U, CYP2J2, KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, RAVER2, FGGY, CACHD1, HSD52, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7) 0.169286363548538 45 0.0450802091002832 0.819468713991513 2499 0.317099697543326 2 2 0 -6.82826538852079 LTS-038 chr1 65280548 65296499 15952 * RAVER2 NA 0 NA 0.741 1 NA NA NA NA NA LTS-038 chr1 65296500 67094233 1797734 * c(MIR3117, MIR3671, AK4, JAK1, LEPR, MIR101-1, PDE4B, LEPROT, RAVER2, SGIP1, DNAJC6) 0.198311862239215 22 0.0739025478592354 0.72514593330369 1039 0.272136757752845 2 2 0 -6.88543807018068 LTS-038 chr1 67094234 67098612 4379 * SGIP1 NA 0 NA 1.062 1 NA NA NA NA NA LTS-038 chr1 67098613 70304896 3206284 * c(INSL5, GNG12-AS1, MIR1262, IL23R, GADD45A, TCTEX1D1, SLC35D1, SERBP1, IL12RB2, C1orf141, DEPDC1, GNG12, LRRC7, MIER1, RPE65, WDR78, WLS, SGIP1, DIRAS3) 0.15067035619856 33 0.0366782178774633 1.00909577742929 1763 0.402763754761774 3 3 0 -6.79604463793339 LTS-038 chr1 70304897 70339103 34207 * LRRC7 NA 0 NA 0.71 1 NA NA NA NA NA LTS-038 chr1 70339104 75688057 5348954 * c(ZRANB2-AS1, FPGT-TNNI3K, NEGR1-IT1, ZRANB2-AS2, HHLA3, TYW3, ERICH3, LRRIQ3, CRYZ, CTH, SLC44A5, NEGR1, MIR186, LHX8, TNNI3K, PIN1P1, LRRC40, PTGER3, LRRC7, ANKRD13C, FPGT, SRSF11, ZRANB2) 0.197167180644757 24 0.0504828138355384 0.747273347216967 2092 0.315900303413797 2 2 0 -6.90691704864346 LTS-038 chr1 75688058 89301916 13613859 * c(PIGK, LINC01364, MIR4423, MIR548AP, IFI44, IFI44L, DNAJB4, SSX2IP, CLCA1, WDR63, ASB17, SAMD13, C1orf52, CTBS, MGC27382, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, LINC01140, ACADM, CYR61, MIGA1, UOX, LINC01555, MSH4, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, PTGFR, ODF2L, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, NA NA NA NA NA NA NA NA NA LTS-038 RPF1, ST6GALNAC5, SYDE2, LMO4, FUBP1, BCL10, NEXN, SELENOF, CLCA3P, CLCA2, HS2ST1) 0.178198463689504 92 0.0557564269368857 0.838044241332458 5378 1.29082054254806 2 2 0 -6.75327009904364 LTS-038 NA NA NA NA LTS-038 chr1 89301917 89318580 16664 * c(GTF2B, PKN2) NA 0 NA 0.725 1 NA NA NA NA NA LTS-038 chr1 89318581 93711782 4393202 * c(GLMN, GBP4, GBP5, GBP6, HFM1, MTF2, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, GTF2B, CCDC18, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, TMED5, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.17348393150968 31 0.0602175804001399 0.778053899758317 3155 0.272351763201897 2 2 0 -6.77925554908065 LTS-038 chr1 93711783 93828177 116395 * c(CCDC18-AS1, DR1, CCDC18) NA 0 NA 0.779858567413044 117 0.208068952317162 2 NA NA -5.76533145764464 LTS-038 chr1 93828178 93913668 85491 * character(0) NA 0 NA 1.16 1 NA NA NA NA NA LTS-038 chr1 93913669 94018031 104363 * FNBP1L 0.345 1 NA 1.22140393202532 93 0.51263566397898 4 4 0 -5.76538097472912 LTS-038 chr1 94018032 97915800 3897769 * c(MIR760, LOC100129046, TMEM56-RWDD3, DPYD-AS1, CNN3, SLC44A3, TMEM56, DPYD, ALG14, F3, ABCA4, RWDD3, GCLM, DNTTIP2, FLJ31662, FNBP1L, PTBP2, ABCD3, LOC729970, BCAR3, ARHGAP29) 0.368556808422951 38 0.0428925101307916 1.12717848922307 1592 0.466932147197343 3 2 1 -6.8248437989389 LTS-038 chr1 97915801 101475236 3559436 * c(LINC01349, LOC100129620, MIR2682, LRRC39, SLC30A7, DBT, PLPPR5, SASS6, AGL, DPYD, EXTL2, SLC35A3, FRRS1, MIR137HG, MIR137, SNX7, DPH5, GPR88, TRMT13, PALMD, MFSD14A, MIR553, LOC729987, VCAM1, CDC14A, RTCA, PLPPR4) 0.38359008360394 5 0.0492270250980089 0.949545154767421 1838 0.314698623454774 3 2 1 -6.94892234268972 LTS-038 chr1 101475237 101475632 396 * DPH5 NA 0 NA 1.211 1 NA NA NA NA NA LTS-038 chr1 101475633 110211762 8736130 * c(LOC100129138, VAV3-AS1, VAV3, HENMT1, OLFM3, ATXN7L2, C1orf194, COL11A1, NBPF4, FNDC7, S1PR1, CELSR2, NTNG1, WDR47, CLCC1, AKNAD1, AMPD2, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM2, GSTM4, GPSM2, SLC25A24, MYBPHL, MIR197, DPH5, PRPF38B, PRMT6, RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, SORT1, SARS, SPATA42, ACTG1P4, NBPF6, SCARNA2, STXBP3, TAF13, GPR61, PSRC1, DNAJA1P5) 0.376437053993431 57 0.0628392746305225 1.06860779203464 3921 0.477082579602637 3 2 1 -6.74130719191598 LTS-038 chr1 110211763 110280033 68271 * c(GSTM1, GSTM2, GSTM3, GSTM5) NA 0 NA 0.754061959030951 202 0.234279737533883 2 NA NA -5.76687986481158 LTS-038 chr1 110280034 110921516 641483 * c(AHCYL1, CSF1, UBL4B, ALX3, GSTM3, KCNC4, SLC6A17, LOC440600, RBM15, EPS8L3, STRIP1, SLC16A4) 0.390579397916975 14 0.0272070813341908 1.05708894239424 890 0.284443937854512 3 2 1 -6.83115407763985 LTS-038 chr1 110921517 112318585 1397069 * c(LINC01160, FAM212B-AS1, LAMTOR5-AS1, CEPT1, LAMTOR5, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, KCNA2, KCNA3, KCNA10, KCND3, PGCP1, OVGP1, ATP5F1, LRIF1, FAM212B, RAP1A, CYMP, WDR77, DENND2D, PROK1, SLC16A4, CD53) 0.400647202452018 53 0.0457208749203612 0.90009228590462 1612 0.361922312392355 3 2 1 -7.00746341011964 LTS-038 chr1 112318586 112318709 124 * KCND3 NA 0 NA 1.105 1 NA NA NA NA NA LTS-038 chr1 112318710 115127646 2808937 * c(AP4B1-AS1, MIR4256, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, AKR7A2P1, MAGI3, PTPN22, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, TRIM33, RSBN1, ST7L, CTTNBP2NL, OLFML3, LOC643355, LOC643441, DCLRE1B, SLC16A1, WNT2B, CAPZA1, LRIG2) 0.379239181558987 30 0.0626328931979421 1.0194866050565 2436 0.347694940316409 3 2 1 -6.74539073627567 LTS-038 chr1 115127647 115252327 124681 * c(DENND2C, AMPD1, NRAS) 0.346608208146151 3 0.0725005747103658 0.837182422910122 227 0.228015723597714 3 2 1 -6.92715007721488 LTS-038 chr1 115252328 118170057 2917730 * c(MIR942, MIR320B1, TSPAN2, MAN1A2, MAB21L3, IGSF3, ATP1A1, NGF, NHLH2, NRAS, FAM46C, SLC22A15, PTGFRN, SYCP1, TSHB, CSDE1, VTCN1, SIKE1, TRIM45, VANGL1, CASQ2, TTF2, ATP1A1-AS1, CD2, CD101, CD58) 0.378771571106913 55 0.0510705460456482 1.09743200749786 2538 0.358475058989205 3 2 1 -6.75926598656634 LTS-038 chr1 118170058 118170156 99 * FAM46C NA 0 NA 0.976 1 NA NA NA NA NA LTS-038 chr1 118170157 120529742 2359586 * c(WARS2, WDR3, ADAM30, HSD3BP4, SPAG17, PHGDH, HMGCS2, HSD3B1, HSD3B2, NBPF7, NOTCH2, HAO2, GDAP2, FAM46C, LINC00622, TBX15, REG4, ZNF697) 0.401679668179554 8 0.0395076846051138 0.937001554283443 1595 0.273764812323459 3 2 1 -7.15307399664786 LTS-038 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.45 1 NA NA NA NA NA LTS-038 chr1 120534071 120572670 38600 * NOTCH2 0.354445085335937 6 0.0691474270429975 0.711650824830806 161 1.12751557876472 6 4 2 -6.75309252850171 LTS-038 chr1 120572671 120611390 38720 * NOTCH2 NA 0 NA 1.352 1 NA NA NA NA NA LTS-038 chr1 120611391 121116715 505325 * c(SRGAP2D, FCGR1B, HIST2H2BA, NOTCH2, FAM72B) 0.280361912485773 14 0.0745402391513956 1.16229747145913 72 0.404124734526777 4 3 1 -6.8309717618432 LTS-038 chr1 121116716 121313547 196832 * c(SRGAP2D, EMBP1) NA 0 NA 0.837123505423122 67 0.37630013546283 2 NA NA -5.76624867595778 LTS-038 chr1 143912360 144013865 101506 * FAM72D 0.18 1 NA 0.655316788323139 5 0.589238491614389 1 1 0 -5.77011597510797 LTS-038 chr1 144013866 145075854 1061989 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.373622970904303 64 0.0937226520958142 0.985467633718556 551 0.343335548141159 3 2 1 -6.75726282735012 LTS-038 chr1 145075855 145075903 49 * c(NBPF20, PDE4DIP) 0.259 1 NA 1.11145315726494 3 0.504615034787246 3 3 0 -5.76441049664814 LTS-038 chr1 145075904 145210034 134131 * c(NBPF10, NBPF20, NOTCH2NL, SEC22B, PDE4DIP) 0.30046362828592 14 0.0884652101483595 1.05453972257427 136 0.499649733304527 4 3 1 -6.75031868849653 LTS-038 chr1 145210035 145248753 38719 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 0.517 1 NA NA NA NA NA LTS-038 chr1 145248754 145290585 41832 * c(NBPF10, NBPF20, NOTCH2NL) 0.320149249004631 14 0.0873553120849016 0.746499073960344 179 1.16337806324796 4 3 1 -6.75289025117419 LTS-038 chr1 145290586 145414667 124082 * c(NBPF10, NBPF20, HFE2, NOTCH2NL) NA 0 NA 1.625 1 NA NA NA NA NA LTS-038 chr1 145414668 146509814 1095147 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NBPF12, NUDT17, RNF115, ANKRD34A, PDZK1, GPR89A, NA, NA, NA, LOC728989, POLR3GL, ITGA10, PEX11B, RBM8A) 0.35825953067794 15 0.0556543756034467 1.00879460472679 1292 0.363624632970479 3 2 1 -6.82723037186901 LTS-038 chr1 146509815 146509827 13 * c(NA, NA, NA, LOC728989) NA 0 NA 1.495 1 NA NA NA NA NA LTS-038 chr1 146509828 147806796 1296969 * c(LINC00624, MIR5087, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.298330837837715 17 0.122303684230977 1.18115098238893 743 0.422020083838717 4 3 1 -6.77698058856383 LTS-038 chr1 147806797 148193315 386519 * c(NBPF14, LINC01138) NA 0 NA 0.666 1 NA NA NA NA NA LTS-038 chr1 148193316 149676575 1483260 * c(FCGR1CP, NBPF14, NBPF15, LOC388692, LINC00869, PPIAL4D, LOC645166, NA, PPIAL4F, PPIAL4E) NA 0 NA 0.548664684307924 101 0.200676709122306 1 NA NA -5.76458473968479 LTS-038 chr1 149676576 149760085 83510 * c(FCGR1A, HIST2H2BF) NA 0 NA 1.177 1 NA NA NA NA NA LTS-038 chr1 149760086 149915065 154980 * c(SF3B4, MTMR11, FCGR1A, HIST2H2AB, HIST2H2BC, HIST2H2BF, BOLA1, OTUD7B, HIST2H3D, HIST2H2AC, HIST2H2BE, SV2A) 0.351219581375187 3 0.0173493515728975 1.49475002895329 459 0.586333948162623 9 6 3 -6.81292253474508 LTS-038 chr1 149915066 150524845 609780 * c(MIR4257, FALEC, VPS45, CIART, ECM1, RPRD2, CA14, APH1A, PLEKHO1, MRPS21, ADAMTSL4, OTUD7B, C1orf54, TARS2, ANP32E, PRPF3) 0.325860877008607 21 0.0404342499797952 1.2020628347959 1117 0.491190353273086 4 3 1 -6.87408841133776 LTS-038 chr1 150524846 150689790 164945 * c(ENSA, MCL1, ADAMTSL4, GOLPH3L, HORMAD1) 0.316488228796627 10 0.0284661592460631 1.39608590984205 504 0.363675619993962 4 3 1 -6.80639306790095 LTS-038 chr1 150689791 151171692 481902 * c(TNFAIP8L2-SCNM1, SEMA6C, MLLT11, GABPB2, BNIPL, CTSK, CTSS, TMOD4, CERS2, LYSMD1, ARNT, C1orf56, FAM63A, CDC42SE1, PRUNE1, VPS72, SCNM1, TNFAIP8L2, PIP5K1A, HORMAD1, ANXA9, SETDB1) 0.311942663446457 24 0.0772993428548853 1.11216103702347 1487 0.403230071529894 4 3 1 -6.77956844490519 LTS-038 chr1 151171693 151188392 16700 * PIP5K1A NA 0 NA 0.913 1 NA NA NA NA NA LTS-038 chr1 151188393 151298860 110468 * c(PI4KB, PSMD4, ZNF687, PIP5K1A) 0.409907970749445 7 0.0569163964993936 0.951352448052644 390 0.262811983326837 3 2 1 -6.90898836700071 LTS-038 chr1 151298861 151313238 14378 * c(PI4KB, RFX5) NA 0 NA 1.554 1 NA NA NA NA NA LTS-038 chr1 151313239 152056613 743375 * c(LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, POGZ, RIIAD1, THEM5, LINGO4, OAZ3, PSMB4, CGN, RFX5, RORC, S100A10, S100A11, MRPL9, MIR554, TUFT1, SNX27, SELENBP1) 0.311202821628578 26 0.0532526200149959 1.29401758815092 1422 0.419668122181207 4 3 1 -6.73735667581939 LTS-038 chr1 152056614 153507281 1450668 * c(C1orf68, PGLYRP3, TCHHL1, RPTN, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, S100A7A, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, LOR, SMCP, KPRP, LCE6A, CRNN, CRCT1, PGLYRP4, PRR9, S100A6, S100A7, S100A8, S100A9, S100A12, S100A7L2, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, TCHH, LCE3D) 0.307837699041709 66 0.0395444572925727 1.05642807377088 1611 0.398540077450027 4 3 1 -6.96368236304316 LTS-038 chr1 153507282 153507607 326 * S100A6 NA 0 NA 1.569 1 NA NA NA NA NA LTS-038 chr1 153507608 153967698 460091 * c(JTB, SLC27A3, S100A16, CREB3L4, CRTC2, SNAPIN, CHTOP, SLC39A1, ILF2, NPR1, S100A14, GATAD2B, RAB13, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13, INTS3, NUP210L, DENND4B) 0.3085144820697 16 0.0433066103499223 1.33980876448658 1487 0.397491920045844 4 3 1 -6.73548798920413 LTS-038 chr1 153967699 153973352 5654 * NUP210L NA 0 NA 1.038 1 NA NA NA NA NA LTS-038 chr1 153973353 154125388 152036 * NUP210L 0.321 1 NA 0.94223421964056 174 0.270373547508528 3 3 0 -5.77909024677268 LTS-038 chr1 154125389 154127356 1968 * NUP210L NA 0 NA 1.456 1 NA NA NA NA NA LTS-038 chr1 154127357 154522974 395618 * c(MIR190B, HAX1, TDRD10, SHE, C1orf43, IL6R, C1orf189, UBE2Q1, ATP8B2, TPM3, AQP10, NUP210L, UBAP2L) 0.306786921173915 21 0.0501381424998307 1.25605230133648 1132 0.389294486565919 4 3 1 -6.73504446488945 LTS-038 chr1 154522975 154523294 320 * UBE2Q1 NA 0 NA 1.579 1 NA NA NA NA NA LTS-038 chr1 154523295 155257036 733742 * c(MIR4258, LOC100505666, SCAMP3, ADAR, PMVK, FAM189B, CHRNB2, CKS1B, CLK2, DCST2, DCST1, EFNA1, EFNA3, EFNA4, KRTCAP2, GBA, GBAP1, KCNN3, MTX1, MUC1, ZBTB7B, DPM3, UBE2Q1, LENEP, SLC50A1, PBXIP1, HCN3, SHC1, MIR92B, THBS3, TRIM46, FLAD1, ADAM15, PYGO2) 0.294994496573831 41 0.0315854435444943 1.37527843210636 2253 0.404738236824763 4 3 1 -6.82277688495829 LTS-038 chr1 155257037 155583272 326236 * c(FDPS, RUSC1, RUSC1-AS1, PKLR, MSTO1, ASH1L, HCN3, ASH1L-AS1, POU5F1P4, MIR555) 0.283494034877267 2 0.0608111831820431 1.20160191179893 681 0.374163152996167 4 3 1 -6.82833833965354 LTS-038 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.898 1 NA NA NA NA NA LTS-038 chr1 155583288 155774925 191638 * c(MSTO2P, GON4L, MSTO1, YY1AP1, DAP3) 0.30839400076973 6 0.0164560019445794 0.977460485874822 453 0.508360260482147 4 3 1 -6.77550525007481 LTS-038 chr1 155774926 155783408 8483 * GON4L NA 0 NA 1.331 1 NA NA NA NA NA LTS-038 chr1 155783409 158153021 2369613 * c(PMF1-BGLAP, C1orf61, NES, PMF1, GLMP, FCRL1, FCRL3, TSACC, IQGAP3, NAXE, CRABP2, LRRC71, TTC24, ETV3, KIAA0907, SYT11, SMG5, LAMTOR2, HDGF, RXFP4, CYCSP52, INSRR, PEAR1, VHLL, LMNA, MIR9-1, MEF2D, ETV3L, NTRK1, RRNAD1, GON4L, GPATCH4, KIRREL, PRCC, UBQLN4, RAB25, RHBG, RIT1, HAPLN2, BGLAP, BCAN, SEMA4A, LOC646268, SSR2, SCARNA4, SNORA80E, CCT3, MIR765, FCRL2, MRPL24, PAQR6, ISG20L2, FCRL5, NA NA NA NA NA NA NA NA NA LTS-038 FCRL4, TMEM79, SH2D2A, CD1D, ARHGEF2, CD5L, MEX3A, SLC25A44, ARHGEF11) 0.296947933434187 79 0.0581356291737026 1.26137593185886 4726 0.456917781635995 4 3 1 -6.75677067878926 LTS-038 NA NA NA NA LTS-038 chr1 158153022 158153790 769 * CD1D NA 0 NA 0.766 1 NA NA NA NA NA LTS-038 chr1 158153791 159806920 1653130 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, CRP, PYHIN1, FCER1A, ACKR1, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, DUSP23, SLAMF8, CADM3, SPTA1, OR6N2, OR6K2, CD1A, CD1B, CD1C, CD1D, CD1E, AIM2) 0.327014424563458 46 0.0392739664974706 1.08110969705294 1666 0.506184918337028 4 3 1 -7.01980231566146 LTS-038 chr1 159806921 159999874 192954 * c(LINC01133, CFAP45, C1orf204, VSIG8, SLAMF8, IGSF9, TAGLN2, SLAMF9, PIGM) 0.328155774669443 4 0.00567890834580028 1.48545902617475 396 0.449873223095638 16 11 5 -7.47468282084708 LTS-038 chr1 159999875 160185814 185940 * c(KCNJ9, KCNJ10, ATP1A2, ATP1A4, DCAF8, CASQ1, PEA15, PIGM, IGSF8) 0.308819249178394 25 0.089454401792198 1.23791614755593 779 0.350008930815802 4 3 1 -6.73567066889473 LTS-038 chr1 160185815 160187602 1788 * DCAF8 NA 0 NA 2.26762894709799 39 0.835095251017873 8 NA NA -5.76441062065665 LTS-038 chr1 160187603 160188016 414 * DCAF8 NA 0 NA 1.36 1 NA NA NA NA NA LTS-038 chr1 160188017 161335377 1147361 * c(TSTD1, MIR5187, SLAMF6, KLHDC9, COPA, ITLN2, FCER1G, NCSTN, ARHGAP30, CFAP126, USP21, APOA2, LY9, MPZ, NDUFS2, SUMO1P3, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, PPOX, ITLN1, VANGL2, SLAMF7, PEX19, SDHC, SLAMF1, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, CD84, DEDD, ADAMTS4, CD48, NR1I3) 0.305368878962083 55 0.0614062642808475 1.24935733867623 2775 0.446295555585785 4 3 1 -6.73918721004883 LTS-038 chr1 161335378 161565520 230143 * c(FCGR2A, FCGR3A, CFAP126, HSPA6, FCGR2C) 0.292460611394701 14 0.0821626970784722 0.931746908242085 246 0.353632662537376 4 3 1 -6.87216222590027 LTS-038 chr1 161565521 161569369 3849 * FCGR2C NA 0 NA 0.183 1 NA NA NA NA NA LTS-038 chr1 161569370 161571035 1666 * FCGR2C NA 0 NA 0.453231489076724 49 0.213470311705379 1 NA NA -5.76518712018844 LTS-038 chr1 161571036 161575983 4948 * HSPA7 NA 0 NA 1.211 1 NA NA NA NA NA LTS-038 chr1 161575984 164816956 3240973 * c(LOC100505795, MIR4654, DUSP12, SH2D1B, UHMK1, FCRLB, FCGR2B, FCGR3B, ATF6, OLFML2B, C1orf111, HSPA7, CCDC190, C1orf226, DDR2, PBX1, HSD17B7, RGS4, RPL31P11, UAP1, MIR556, NUF2, FCRLA, RGS5, NOS1AP) 0.304945042375943 48 0.064980138809611 1.22820328188031 1898 0.44590412454701 4 3 1 -6.76652375109491 LTS-038 chr1 164816957 164818795 1839 * PBX1 0.244 1 NA 1.08507986649459 39 0.237687691302034 3 3 0 -5.76443082793235 LTS-038 chr1 164818796 183093823 18275028 * c(MIR921, GM140, MIR1295A, RASAL2-AS1, MIR3119-1, MIR3120, MIR3119-2, MIR3121, MIR3658, LOC100505918, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, DNM3OS, MIR1295B, GPA33, STX6, SLC19A2, FMO9P, TADA1, AXDND1, ZNF648, TEDDM1, FAM163A, RC3H1, METTL11B, FAM78B, TDRD5, TOR1AIP2, DHX9, DPT, FLJ23867, F5, ALDH9A1, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TOR1AIP1, TIPRL, SNORD81, SNORD79, SNORD80, NA NA NA NA NA NA NA NA NA LTS-038 SNORD47, SNORD44, ABL2, CACYBP, KLHL20, GLUL, SLC9C2, LOC284648, LINC01142, NME7, MR1, ANKRD45, RGSL1, FASLG, SFT2D2, ILDR2, FMO6P, LINC00272, LAMC1, LOC400794, C1orf220, LMX1A, MGST3, LRRC52, LOC440700, ASTN1, SERPINC1, MYOC, ATP1B1, PBX1, IER5, SUCO, METTL13, PIGC, PRRX1, TMCO1, POU2F1, RALGPS2, DARS2, C1orf112, ADCY10, DCAF6, SCYL3, MIR488, POGK, QSOX1, KIAA1614, BRINP2, CCDC181, RGS16, RNASEL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 GAS5, PAPPA2, SNORD74, RXRG, XCL1, TNN, MRPS14, SELE, SELL, SELP, TOR3A, RFWD2, SOAT1, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR557, TNR, TOP1P1, TNFSF4, LOC730102, LOC730159, UCK2, CACNA1E, NPHS2, LINC00626, MROH9, NPL, SHCBP1L, TEX35, ACBD6, ZBTB37, ANKRD36BP1, MAEL, RGS8, BLZF1, VAMP4, CREG1, SEC16B, LHX4, TNFSF18, MPZL1, ANGPTL1, TBX19, CENPL, CD247, XPR1, DUSP27, RCSD1, METTL18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 GORAB, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.264743912329885 294 0.0543724430583939 1.20747791057327 13284 0.44735788786002 4 3 1 -7.36663547741017 LTS-038 NA NA NA NA LTS-038 chr1 183093824 183093826 3 * LAMC1 NA 0 NA 1.656 1 NA NA NA NA NA LTS-038 chr1 183093827 183208560 114734 * c(LAMC1, LAMC2) NA 0 NA 1.61088500302816 260 0.520924915522494 5 NA NA -5.76474372767719 LTS-038 chr1 183208561 196712765 13504205 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, OCLM, TSEN15, FAM129A, NMNAT2, COLGALT2, RGL1, SMG7-AS1, CFH, BRINP3, KCNT2, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RNF2, RGS18, TROVE2, TPR, CDC73, EDEM3, C1orf21, TRMT1L, HMCN1, B3GALT2, SMG7) 0.279494412248628 72 0.0538566171539543 1.25669143618956 4366 0.446808509990137 4 3 1 -6.93296703812776 LTS-038 chr1 196712766 196714918 2153 * c(CFHR4, CFH) NA 0 NA 0.814 1 NA NA NA NA NA LTS-038 chr1 196714919 196952260 237342 * c(CFHR4, CFHR3, CFH, CFHR1, CFHR2, CFHR5) 0.312643146108837 8 0.0754120822074099 0.961394014940808 250 0.712318353098278 4 3 1 -6.76241061871391 LTS-038 chr1 196952261 196952268 8 * CFHR5 0.385 1 NA 1.367 1 NA NA NA NA NA LTS-038 chr1 196952269 200342272 3390004 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.247324327106823 25 0.0865202673751455 1.16935445097395 1725 0.503813206293901 4 3 1 -7.0943353732508 LTS-038 chr1 200342273 202113835 1771563 * c(MIR1231, MIR5191, TIMM17A, ARL8A, CSRP1, SHISA4, ELF3, KIF21B, CAMSAP2, ZNF281, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, LINC00862, IPO9, C1orf106, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, DDX59, NAV1, IGFN1, GPR37L1, KIF14) 0.265571315655149 82 0.0478610369903183 1.29342961487475 3035 0.447917355839264 5 4 1 -6.92465834540391 LTS-038 chr1 202113836 202166190 52355 * c(ARL8A, PTPRVP, PTPN7, LGR6) NA 0 NA 1.23275087424079 148 0.3218356344219 4 NA NA -5.7653137572189 LTS-038 chr1 202166191 202166466 276 * LGR6 NA 0 NA 1.095 1 NA NA NA NA NA LTS-038 chr1 202166467 202183308 16842 * LGR6 0.088 1 NA 0.961342507255607 13 0.296775491420185 3 3 0 -5.76530894943534 LTS-038 chr1 202183309 203055019 871711 * c(PCAT6, KDM5B, SYT2, LOC148709, UBE2T, NA, MYOG, PPP1R12B, ADIPOR1, CYB5R1, RABIF, KLHL12, LGR6, MGAT4EP, PPFIA4, TMEM183A) 0.1281905876153 36 0.0307008479279004 1.05830767668781 1528 0.340549282043149 3 3 0 -6.8311956170278 LTS-038 chr1 203055020 203055101 82 * MYOG 0.033 1 NA 4.234 1 NA NA NA NA NA LTS-038 chr1 203055102 203194244 139143 * c(CHI3L1, CHIT1, ADORA1, MYBPH, MYOG) NA 0 NA 1.68706544955887 260 0.445283785332735 6 NA NA -5.76633544201706 LTS-038 chr1 203194245 203785948 591704 * c(ZBED6, CHIT1, FMOD, OPTC, ATP2B4, LAX1, PRELP, SNORA77, LINC01136, BTG2, LINC00260, ZC3H11A) 0.107125475154001 10 0.0260119630597581 1.34088926611084 698 0.410705973853721 4 4 0 -6.77076047126721 LTS-038 chr1 203785949 203786035 87 * ZC3H11A NA 0 NA 0.831 1 NA NA NA NA NA LTS-038 chr1 203786036 204199784 413749 * c(GOLT1A, PLEKHA6, LINC00303, KISS1, ETNK2, REN, SNRPE, SOX13, ZC3H11A) 0.129951476099223 21 0.0435578979771806 1.08308063655654 499 0.363232742853229 3 3 0 -6.77107999074729 LTS-038 chr1 204199785 204210509 10725 * PLEKHA6 NA 0 NA 0.72 1 NA NA NA NA NA LTS-038 chr1 204210510 204210997 488 * PLEKHA6 0.185 1 NA 0.796329910664918 9 0.401610819077375 2 2 0 -5.76441015095011 LTS-038 chr1 204210998 204216410 5413 * PLEKHA6 0.227 1 NA 0.571698825144169 17 0.232604830889088 1 1 0 -5.76452598555694 LTS-038 chr1 204216411 204435928 219518 * c(LINC00628, PLEKHA6, PIK3C2B, PPP1R15B) 0.227144699676641 11 0.0414410863318475 0.682282265500972 403 0.250168770385188 2 2 0 -7.34864343415801 LTS-038 chr1 204435929 207640205 3204277 * c(LRRN2, IL24, SLC26A9, CR2, MFSD4A, PM20D1, CTSE, CD55, EIF2D, ELK4, NFASC, SRGAP2, SLC41A1, DSTYK, LEMD1-AS1, LOC284578, LOC284581, IL19, IL10, TMEM81, MDM4, C1orf186, MIR135B, IL20, CDK18, PFKFB2, PIGR, PIK3C2B, KLHDC8A, AVPR1B, YOD1, RBBP5, NUCKS1, SRGAP2C, CNTN2, C4BPA, C4BPB, FAM72A, C1orf116, NUAK2, RASSF5, FCAMR, DYRK3, SLC45A3, RAB29, FCMR, MAPKAPK2, LEMD1, IKBKE, TMCC2) 0.260440169432492 82 0.0573908623475872 0.587167166730207 4635 0.197423848836925 1 1 0 -6.98641748603809 LTS-038 chr1 207640206 207641922 1717 * CR2 NA 0 NA 0.434 1 NA NA NA NA NA LTS-038 chr1 207641923 207912286 270364 * c(CR1, CR1L, CR2) 0.209981981412131 8 0.0808804232008145 0.491028312024896 303 0.152781533116434 1 1 0 -7.12746361389643 LTS-038 chr1 207912287 207925383 13097 * CD46 NA 0 NA 0.709 1 NA NA NA NA NA LTS-038 chr1 207925384 209823433 1898050 * c(MIR4260, LOC148696, LAMB3, MIR205, MIR29C, CD46, PLXNA2, CAMK1G, MIR205HG, CD34) 0.271389037124495 17 0.0431437405997808 0.667795399169144 756 0.190834468714906 1 1 0 -7.7729757950612 LTS-038 chr1 209823434 209824223 790 * LAMB3 NA 0 NA 0.527 1 NA NA NA NA NA LTS-038 chr1 209824224 215409878 5585655 * c(MIR3122, LINC00538, CENPF, TATDN3, C1orf74, SPATA45, FAM71A, SYT14, INTS7, NSL1, RPS6KC1, DIEXF, FLVCR1, NENF, HSD11B1, RD3, IRF6, KCNH1, KCNK2, LAMB3, ATF3, NEK2, G0S2, DTL, TMEM206, PPP2R5A, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, SERTAD4-AS1, PTPN14, FLVCR1-AS1, SNORA16B, TRAF5, SLC30A1, VASH2, TRAF3IP3, LINC00467, ANGEL2, LPGAT1) 0.240083993016885 89 0.0623614419188832 0.570843616139889 3453 0.226944047018362 1 1 0 -6.9836685309417 LTS-038 chr1 215409879 215741053 331175 * c(KCNK2, KCTD3) 0.222321057080951 2 0.0770746391493337 0.886864244888551 18 0.374491062050292 2 2 0 -6.88593052474078 LTS-038 chr1 215741054 215793834 52781 * KCTD3 0.395 1 NA 1.05175401660162 93 0.294241748235804 3 3 0 -5.76441081603912 LTS-038 chr1 215793835 217622697 1828863 * c(ESRRG, KCTD3, GPATCH2, USH2A) 0.417481609985695 22 0.0513678904877373 1.06359215418456 817 0.392492092828195 3 2 1 -7.04549689142464 LTS-038 chr1 217622698 217664954 42257 * GPATCH2 NA 0 NA 1.193 1 NA NA NA NA NA LTS-038 chr1 217664955 224586756 6921802 * c(MIR320B2, MIR4742, LINC00210, BPNT1, DUSP10, LYPLAL1, SPATA17, BROX, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, RRP15, MARC2, SUSD4, GPATCH2, SLC30A10, IARS2, LYPLAL1-AS1, MARC1, AIDA, SNORA36B, AURKAPS1, TGFB2, TLR5, TP53BP2, TGFB2-AS1, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.451908717542293 87 0.0403174883437187 1.23301062076927 3744 0.448085895462078 4 2 2 -6.81169355446544 LTS-038 chr1 224586757 224588575 1819 * WDR26 NA 0 NA 1.874 1 NA NA NA NA NA LTS-038 chr1 224588576 228335455 3746880 * c(NA, MIR3620, MIR5008, LEFTY1, SNAP47, DNAH14, MRPL55, PARP1, CNIH3, SDE2, EPHX1, LIN9, GUK1, PYCR2, H3F3A, ZNF678, PRSS38, ITPKB, ARF1, STUM, LBR, ZNF847P, H3F3AP4, ENAH, PSEN2, COQ8A, ACBD3, JMJD4, SRP9, LEFTY2, WNT9A, C1orf35, WDR26, MIXL1, CDC42BPA, WNT3A, TMEM63A) 0.412839343384482 64 0.0415563509892253 1.43419328270965 3279 0.48805110614748 5 3 2 -6.7944493201254 LTS-038 chr1 228335456 228335989 534 * GUK1 NA 0 NA 0.862 1 NA NA NA NA NA LTS-038 chr1 228335990 234599674 6263685 * c(LINC00582, MIR1182, TSNAX-DISC1, MIR4666A, MIR4671, MIR4427, SPHAR, CAPN9, CCSAP, C1orf131, HIST3H2BB, SLC35F3, EXOC8, LOC149373, RNF187, AGT, IBA57, COG2, ABCB10, GALNT2, TAF5L, DISC2, DISC1, GUK1, FAM89A, KCNK1, COA6, TRIM67, TRIM17, EGLN1, MAP10, NUP133, GJC2, DUSP5P1, C1orf145, SIPA1L2, ACTA1, RHOU, RAB4A, SNRPD2P2, ARV1, TARBP1, TSNAX, TTC13, PGBD5, PCNX2, TRIM11, HIST3H3, SPRTN, OBSCN, NTPCR, NA NA NA NA NA NA NA NA NA LTS-038 GNPAT, MLK4, C1orf198, HIST3H2A, URB2) 0.449983698185493 138 0.0638712108643406 1.19526625842348 5343 0.349382468671391 4 2 2 -6.95370983706075 LTS-038 NA NA NA NA LTS-038 chr1 234599675 234953934 354260 * c(LINC00184, LINC01354, LINC01132, IRF2BP2, TARBP1) 0.451500435635121 3 0.0221885856541902 1.7652155568308 146 0.613494791260781 6 3 3 -6.78605102191263 LTS-038 chr1 234953935 235272604 318670 * character(0) NA 0 NA 1.076 1 NA NA NA NA NA LTS-038 chr1 235272605 240555920 5283316 * c(LOC100130331, LGALS8-AS1, MIR1537, MIR4753, LYST, CHRM3, EDARADD, B3GALNT2, RBM34, GNG4, LINC01139, LGALS8, MTR, NID1, ARID4B, HEATR1, ERO1B, FMN2, ZP4, RYR2, MT1HL1, RPS7P5, SNORA14B, TBCE, GPR137B, ACTN2, GGPS1, TOMM20) 0.44264044309984 64 0.0512556520305748 1.10856822133994 3384 0.371242459319807 4 2 2 -7.27655733272502 LTS-038 chr1 240555921 240601311 45391 * FMN2 NA 0 NA 0.681 1 NA NA NA NA NA LTS-038 chr1 240601312 240652947 51636 * c(FMN2, GREM2) 0.416600105814862 2 0.0643467170879758 0.905994673877714 38 0.275916803590423 5 3 2 -6.8494251418496 LTS-038 chr1 240652948 240654111 1164 * GREM2 0.321 1 NA 0.95114116228616 27 0.214736478004449 3 3 0 -5.76455900892848 LTS-038 chr1 240654112 243328933 2674822 * c(MIR3123, CHML, WDR64, PLD5, FH, OPN3, MAP1LC3C, RGS7, GREM2, LINC01347, KMO, EXO1, CEP170) 0.381855166888712 13 0.0494348833548507 0.81366904645884 964 0.297872323589736 2 1 1 -7.58395689873108 LTS-038 chr1 243328934 247109045 3780112 * c(AKT3, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, COX20, LINC01341, ADSS, CNST, C1orf100, LOC255654, C1orf101, AHCTF1, NA, HNRNPU, LOC339529, DESI2, SCCPDH, KIF26B, ZNF695, TFB2M, SMYD3, EFCAB2, CEP170) 0.364667807906874 53 0.0878714012862308 0.959572037456135 2073 0.416303692210587 3 2 1 -6.85506994757001 LTS-038 chr1 247109046 247109057 12 * c(ZNF670-ZNF695, ZNF695) NA 0 NA 0.876 1 NA NA NA NA NA LTS-038 chr1 247109058 247752651 643594 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2G2, OR2C3, ZNF496, ZNF670) 0.375348126037195 18 0.0615854791475236 0.855029344623297 769 0.447224993121655 3 2 1 -6.81636237445696 LTS-038 chr1 247752652 248605384 852733 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3) 0.36524289311481 29 0.0643187298908982 0.698955174928443 683 0.25718853144964 2 1 1 -7.67020361472474 LTS-038 chr1 248605385 248616012 10628 * character(0) NA 0 NA 0.168 1 NA NA NA NA NA LTS-038 chr1 248616013 248652216 36204 * c(OR2T3, OR2T2, OR2T5) 0.356978665815562 8 0.137334770854705 0.385429968971553 103 0.35764570088764 3 2 1 -6.91510753507982 LTS-038 chr1 248652217 248684882 32666 * OR2T5 NA 0 NA 0.511 1 NA NA NA NA NA LTS-038 chr1 248684883 248737828 52946 * c(OR2T34, OR2T29, OR2G6) 0.395926234971156 6 0.0552403837785365 0.748296608913246 54 0.313791384830067 3 2 1 -6.82249501541793 LTS-038 chr1 248737829 248814033 76205 * c(OR2T34, OR2T10, OR2T11, OR2T27, OR2T35) 0.28175 3 0.113318136235997 0.192404887238714 107 0.568944023664128 1 1 0 -6.88982533200431 LTS-038 chr1 248814034 249213594 399561 * c(MIR3124, PGBD2, OR14I1, OR2T27, ZNF692, LYPD8, ZNF672, SH3BP5L) 0.242464709817711 6 0.0580428003000085 0.469249060211502 322 0.191204546963286 1 1 0 -7.01657606053724 LTS-038 chr1 249213595 249214134 540 * character(0) NA 0 NA 0.357116975398076 11 0.0726633582788714 0 NA NA -5.76660427133425 LTS-038 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.488 1 NA 0.263950021311609 85 0.0807945088546519 0 0 0 -5.96808633609554 LTS-038 chr2 218387 1794410 1576024 * c(TMEM18, MYT1L, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2, TPO, PXDN) 0.431828006284903 25 0.0732546926824487 0.298986582141927 789 0.101579894801213 0 0 0 -6.76444128237175 LTS-038 chr2 1794411 1983556 189146 * MYT1L NA 0 NA 0.278779994097292 132 0.104756301302131 0 NA NA -5.79940069848939 LTS-038 chr2 1983557 3193040 1209484 * c(MYT1L, TSSC1, MYT1L-AS1) 0.167 1 NA 0.597277310947452 9 0.296681273048667 1 1 0 -5.82716804122963 LTS-038 chr2 3193041 18114212 14921172 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, C2orf50, PQLC3, LINC01105, FAM84A, DDX1, E2F6, CYS1, LPIN1, NTSR2, ATP6V1C2, RNASEH1, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, MSGN1, GEN1, C2orf48, KCNF1, KCNS3, RNF144A-AS1, LOC400940, LINC00487, MYCN, ODC1, TRAPPC12, NBAS, CPSF3, ADI1, NA NA NA NA NA NA NA NA NA LTS-038 ALLC, KIDINS220, RPS7, RRM2, SOX11, ADAM17, TSSC1, LINC01249, RAD51AP2, VSNL1, COLEC11, SMC6, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.162484260806928 142 0.0477810597137181 0.937909373023558 5629 0.364937995984477 3 3 0 -7.61250345234505 LTS-038 NA NA NA NA LTS-038 chr2 18735952 20872314 2136363 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, GDF7, PUM2, RHOB, LINC00954, MATN3, WDR35, RDH14, SDC1, HS1BP3, NT5C1B, LAPTM4A) 0.142245555452191 23 0.0787336782759555 1.07058076552997 1135 0.369071755382671 3 3 0 -6.73669615422948 LTS-038 chr2 20872315 20872326 12 * character(0) 0.179 1 NA 0.24 1 NA NA NA NA NA LTS-038 chr2 20872327 21255343 383017 * c(APOB, LDAH) 0.163136284697198 5 0.0167541039748475 0.778476929204656 457 0.216729227635858 2 2 0 -7.61623629100881 LTS-038 chr2 21255344 23865908 2610565 * c(KLHL29, APOB, LOC645949) 0.169290541510762 3 0.0343947670438397 0.974110569476313 235 0.316225246650841 3 3 0 -7.2090891143123 LTS-038 chr2 23865909 23919740 53832 * KLHL29 0.138 1 NA 0.985120157613431 41 0.308344677664302 3 3 0 -5.76580501461339 LTS-038 chr2 23919741 26534765 2615025 * c(MIR1301, RAB10, ADCY3, KLHL29, GAREM2, ADGRF3, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, HADHA, HADHB, PFN4, FAM228B, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3) 0.152592300815443 53 0.0331926141958614 0.931360986263315 2981 0.30903727652182 3 3 0 -7.03760164383044 LTS-038 chr2 26534766 27665475 1130710 * c(OST4, GTF3C2-AS1, PREB, CENPA, CGREF1, EMILIN1, CIB4, ZNF513, TCF23, ADGRF3, KRTCAP3, MAPRE3, FTH1P3, DNAJC5G, GTF3C2, NRBP1, C2orf70, PRR30, KCNK3, KHK, MPV17, ATRAID, TMEM214, PPM1G, SLC35F6, DPYSL5, TRIM54, AGBL5, UCN, SLC30A3, CAD, ABHD1, SELENOI, SLC5A6, EIF2B4, DRC1, OTOF, SNX17) 0.112675561190205 52 0.0378295923094427 1.21725209308548 2974 0.37449295316889 4 4 0 -6.75511268009574 LTS-038 chr2 27665476 27885159 219684 * c(GPN1, KRTCAP3, IFT172, GCKR, FNDC4, CCDC121, C2orf16, ZNF512, SUPT7L) 0.140277226564244 19 0.0340853761237437 0.877951848398205 956 0.303740333810215 3 3 0 -6.77868094494232 LTS-038 chr2 27885160 27886285 1126 * SUPT7L NA 0 NA 1.516 1 NA NA NA NA NA LTS-038 chr2 27886286 29022413 1136128 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, SLC4A1AP, FOSL2, SPDYA, PPP1CB, RBKS, MRPL33, BRE, SUPT7L) 0.132635678371103 10 0.0333639859062966 1.07026046345832 953 0.384360535145768 3 3 0 -6.76946169691201 LTS-038 chr2 29022414 29022418 5 * c(SPDYA, PPP1CB) NA 0 NA 1.163 1 NA NA NA NA NA LTS-038 chr2 29022419 39006664 9984246 * c(LOC100271832, LOC100288911, CEBPZOS, MIR4765, RMDN2-AS1, CEBPZ, CDC42EP3, GALM, MYADML, RMDN2, CYP1B1, FAM179A, WDR43, PRKD3, ALK, SPDYA, LCLAT1, GPATCH11, RASGRP3, QPCT, FAM98A, SNORD53, LINC00486, CYP1B1-AS1, EHD3, C2orf71, SULT6B1, LTBP1, CAPN14, MEMO1, CRIM1, YPEL5, VIT, HEATR5B, PPP1CB, TRMT61B, NDUFAF7, TTC27, SLC30A6, EIF2AK2, BIRC6, NLRC4, ATL2, SRSF7, SPAST, SRD5A2, STRN, SNORD92, MIR558, NA NA NA NA NA NA NA NA NA LTS-038 XDH, GALNT14, CLIP4, GEMIN6, LBH, YIPF4, DPY30, CAPN13, HNRNPLL, FEZ2) 0.151437437767597 108 0.0422878790077329 0.921303645028978 5893 0.329952668472446 3 3 0 -7.59313560498242 LTS-038 NA NA NA NA LTS-038 chr2 39006665 39008642 1978 * GEMIN6 NA 0 NA 0.512 1 NA NA NA NA NA LTS-038 chr2 39008643 39440731 432089 * c(ARHGEF33, CDKL4, LOC375196, SOS1, MORN2, GEMIN6, DHX57) 0.170922357018917 3 0.0492442890089805 0.805867887054226 600 0.27118935971575 2 2 0 -6.7820108725804 LTS-038 chr2 39440732 39452881 12150 * CDKL4 NA 0 NA 1.084 1 NA NA NA NA NA LTS-038 chr2 39452882 48725813 9272932 * c(SLC8A1-AS1, LINC01126, LINC01119, MIR548AD, LRPPRC, SIX2, PPP1R21, PLEKHH2, TMEM178A, OXER1, KCNG3, EPAS1, RHOQ, HAAO, EML4, C2orf61, MSH6, FOXN2, CDKL4, LOC388942, TMEM247, LINC01118, C2orf91, LINC01121, EPCAM, MSH2, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, KCNK12, TTC7A, MTA3, THADA, ABCG5, ABCG8, SIX3, SLC3A1, SLC8A1, ZFP36L2, MIR559, LOC728730, C1GALT1C1L, CAMKMT, FBXO11, CALM2, THUMPD2, MAP4K3, MCFD2, NA NA NA NA NA NA NA NA NA LTS-038 ATP6V1E2, PKDCC, COX7A2L, CRIPT, PREPL, SOCS5) 0.141586304545722 44 0.0383395588902444 0.973658172377507 4763 0.675635596573637 3 3 0 -6.80256015173935 LTS-038 NA NA NA NA LTS-038 chr2 48725814 50147755 1421942 * c(GTF2A1L, STON1, PPP1R21, FSHR, STON1-GTF2A1L, LHCGR, NRXN1) 0.130372823420712 13 0.054520403143909 0.828358995386045 521 0.366011038813037 3 3 0 -7.09349228934063 LTS-038 chr2 50147756 50574229 426474 * NRXN1 NA 0 NA 0.864259881774557 94 0.21159692951719 2 NA NA -5.79974335142849 LTS-038 chr2 50574230 50692560 118331 * NRXN1 0.329 1 NA 1.23160117342205 15 0.36360402323721 4 4 0 -5.76606517795596 LTS-038 chr2 50692561 63816595 13124035 * c(SNORA70B, MIR216B, LOC100132215, DBIL5P2, MIR3682, MIR4432, MIR5192, CCT4, B3GNT2, GPR75, CFAP36, CCDC85A, C2orf73, CLHC1, AHSA2, COMMD1, PUS10, TMEM17, EFEMP1, PSME4, EHBP1, ERLEC1, LOC339803, C2orf74, PRORSD1P, TSPYL6, EML6, LINC01122, LINC01185, MIR216A, MIR217, MDH1, MTIF2, CHAC2, OTX1, WDPCP, ASB3, PEX13, BCL11A, FANCL, CCDC88A, RPL23AP32, RTN4, PPP4R3B, REL, RPS27A, PAPOLG, SPTBN1, VRK2, XPO1, NA NA NA NA NA NA NA NA NA LTS-038 FAM161A, KIAA1841, PNPT1, NRXN1, USP34, ACYP2) 0.320573397308452 63 0.0552208293106808 1.13570251861558 4837 0.426992790673157 4 3 1 -7.48420197537382 LTS-038 NA NA NA NA LTS-038 chr2 63816596 63820277 3682 * MDH1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-038 chr2 63820278 64085114 264837 * c(MDH1, UGP2) 0.338 1 NA 0.890913406563003 103 0.471947982869056 2 2 0 -5.77291058771386 LTS-038 chr2 64085115 64124722 39608 * c(VPS54, UGP2) 0.466 1 NA 0.863771083185673 69 0.229266987729163 2 2 0 -5.7671802969198 LTS-038 chr2 64124723 66585479 2460757 * c(MIR4434, MIR4778, ACTR2, LINC00309, SPRED2, CEP68, LGALSL, LOC339807, LOC400958, VPS54, AFTPH, PELI1, RAB1A, SLC1A4, SERTAD2) 0.417319343258123 21 0.0302679305379079 0.899330546067277 1012 0.297504142709402 2 1 1 -7.41976812845787 LTS-038 chr2 66585480 66662289 76810 * MEIS1-AS3 NA 0 NA 1.518 1 NA NA NA NA NA LTS-038 chr2 66662290 68273614 1611325 * c(C1D, MEIS1, ETAA1, LOC644838) 0.401533191319552 2 0.0636396103067893 1.19549603702159 268 0.386209579558318 3 2 1 -6.91084002300802 LTS-038 chr2 68273615 73492614 5219000 * c(SNORA36C, LOC100133985, MIR3126, MPHOSPH10, SMYD5, C1D, CCT7, PROKR1, SNRNP27, TEX261, WDR92, ADD2, FBXO41, ASPRV1, CLEC4F, GKN2, APLF, EMX1, AAK1, EXOC6B, VAX2, CNRIP1, RAB11FIP5, GFPT1, NFU1, BMP10, ZNF638, ANXA4, FIGLA, NOTO, PCBP1-AS1, PAIP2B, MXD1, CD207, PCBP1, PCYOX1, ATP6V1B1, PLEK, C2orf42, PPP3R1, FBXO48, NAGK, GKN1, CYP26B1, PNO1, GMCL1, SNRPG, SPR, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, NA NA NA NA NA NA NA NA NA LTS-038 ANTXR1, PRADC1, MCEE, FAM136A, SFXN5, ARHGAP25) 0.416673332543966 94 0.051072385727006 0.887519940155818 5155 0.457176821318864 2 1 1 -7.0728753240727 LTS-038 NA NA NA NA LTS-038 chr2 73492615 74128361 635747 * c(STAMBP, FBXO41, EGR4, ALMS1P1, C2orf78, TPRKB, ACTG2, ALMS1, DUSP11, NAT8) 0.301 1 NA 0.7992702061144 803 0.244859903549144 2 2 0 -5.76441312916919 LTS-038 chr2 74128362 74909184 780823 * c(DCTN1-AS1, BOLA3-AS1, INO80B-WBP1, SEMA4F, MTHFD2, MRPL53, M1AP, LBX2-AS1, DCTN1, DQX1, DGUOK, DOK1, TET3, WBP1, HTRA2, TLX2, BOLA3, C2orf81, AUP1, MOB1A, SLC4A5, RTKN, TTC31, ACTG2, MOGS, INO80B, WDR54, LOXL3, PCGF1, CCDC142, LBX2) 0.370304501175821 16 0.0546192502694792 0.877199236557061 2113 0.272360295455572 3 2 1 -6.9481741008802 LTS-038 chr2 74909185 75061115 151931 * c(SEMA4F, HK2) NA 0 NA 1.284 1 NA NA NA NA NA LTS-038 chr2 75061116 87018806 11957691 * c(SNAR-H, MIR4264, RNF103-CHMP3, MIR4779, PARTICL, MIR5000, GNLY, TGOLN2, USP39, VAMP5, IMMT, TRABD2A, TMEM150A, REG3G, CTNNA2, DHFRP3, DNAH6, POLR1A, GGCX, SH2D6, LOC284950, HK2, LRRTM1, FUNDC2P2, C2orf68, MAT2A, REG3A, RNF181, MRPL35, CHMP3, RETSAT, PTCD3, KDM3A, POLE4, KCMF1, REG1A, REG1B, REG1CP, SFTPB, RMND5A, REEP1, TACR1, SNORD94, GCFC2, RNF103, LRRTM4, CAPG, TCF7L1, EVA1A, ELMOD3, ATOH8, NA NA NA NA NA NA NA NA NA LTS-038 VAMP8, SUCLG1, ST3GAL5, LOC90784, TMSB10, CD8A, MRPL19) 0.374305160396733 77 0.0706054206644531 0.955455895446476 4090 0.323526142614189 3 2 1 -7.29506260433757 LTS-038 NA NA NA NA LTS-038 chr2 87018807 87042605 23799 * c(RMND5A, CD8A, CD8B) NA 0 NA 0.612 1 NA NA NA NA NA LTS-038 chr2 87042606 87426643 384038 * c(ANAPC1P1, LOC285074, RMND5A, CD8B) 0.385497977712386 3 0.0711266476083331 0.679711249542573 229 0.290081446121952 2 1 1 -7.19515731917437 LTS-038 chr2 87426644 88913273 1486630 * c(MIR4780, CYTOR, SMYD1, TEX37, FABP1, FOXI3, KRCC1, THNSL2, RMND5A, EIF2AK3) 0.380189658804209 21 0.0595404224435963 0.857206902878534 504 0.262285056204977 3 2 1 -7.22559541425574 LTS-038 chr2 88913274 89160889 247616 * c(MIR4436A, RPIA, ANKRD36BP2, EIF2AK3) 0.351 1 NA 1.06409152443537 115 0.389846464917922 3 3 0 -5.76457602408206 LTS-038 chr2 89160890 91925073 2764184 * LOC654342 0.322080350745725 4 0.0396694676882192 0.831439001406362 300 0.786603371168724 4 3 1 -7.31728510347506 LTS-038 chr2 91925074 91925139 66 * character(0) 0.292 1 NA 2.318 1 NA NA NA NA NA LTS-038 chr2 91925140 91937761 12622 * character(0) 0.342688610233091 17 0.0728233660788817 1.48161870923211 61 0.841929344932176 12 8 4 -6.7431628119071 LTS-038 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.67495154798852 16 0.308014691208066 6 NA NA -5.76503729755057 LTS-038 chr2 95537183 95542363 5181 * c(TEKT4, LOC442028) 0.279 1 NA 1.14099582686143 43 0.460587713776593 3 3 0 -5.76451059238083 LTS-038 chr2 95542364 99204428 3662065 * c(MIR3127, ACTR1B, ARID5A, CNGA3, TRIM43, COX5B, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, CNNM4, CNNM3, STARD7-AS1, KCNIP3, INPP4A, ANKRD36, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, LINC01125, FAHD2CP, ZAP70, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.371309164431116 68 0.101581320654352 1.01183867183484 3958 0.378776678219699 3 2 1 -6.75818650267135 LTS-038 chr2 99204429 99205962 1534 * INPP4A 0.443 1 NA 0.977435335416741 35 0.170210680129809 3 3 0 -5.76457433629356 LTS-038 chr2 99205963 99279911 73949 * c(MGAT4A, UNC50, INPP4A, COA5) 0.424538502285852 15 0.0419180606603384 0.995284410610262 330 0.319859030053189 5 3 2 -6.84821372249413 LTS-038 chr2 99279912 99291413 11502 * MGAT4A NA 0 NA 0.79 1 NA NA NA NA NA LTS-038 chr2 99291414 101911385 2619972 * c(TXNDC9, TBC1D8, MGAT4A, NMS, LYG1, MITD1, C2orf15, LONRF2, LYG2, RNF149, KIAA1211L, AFF3, NPAS2, MRPL30, REV1, LIPT1, CNOT11, RPL31, SNORD89, PDCL3, TSGA10, CHST10, EIF5B) 0.446914486745134 54 0.0388107630939629 0.809651778934089 2006 0.269872635243116 2 1 1 -6.7386413955594 LTS-038 chr2 101911386 101925223 13838 * RNF149 NA 0 NA 0.764926315567975 19 0.145042280587058 2 NA NA -5.76514768434784 LTS-038 chr2 101925224 101965175 39952 * c(MIR5696, CREG2) NA 0 NA 0.505 1 NA NA NA NA NA LTS-038 chr2 101965176 101965367 192 * CREG2 0.272 1 NA 0.648958424910868 3 0.343668929834126 1 1 0 -5.76443840484727 LTS-038 chr2 101965368 108863721 6898354 * c(LOC100287010, LINC01158, MIR4772, GPR45, TMEM182, LINC01102, CREG2, FHL2, LINC01114, LOC285000, PLGLA, RGPD4, IL1R1, SLC9A4, SULT1C3, POU3F3, SLC5A7, MRPS9, RGPD3, SLC9A2, RGPD4-AS1, RFX8, IL1R2, C2orf49, UXS1, NCK2, C2orf40, ST6GAL2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1, MAP4K4) 0.270417928902606 56 0.0680640812458683 0.54621590738143 2466 0.243518525709611 1 1 0 -6.73323763354928 LTS-038 chr2 108863722 108863758 37 * SULT1C3 0.345 1 NA 0.352 1 NA NA NA NA NA LTS-038 chr2 108863759 109006606 142848 * c(SULT1C2P1, SULT1C4, SULT1C3, SULT1C2) 0.237380242449806 4 0.0291719042916296 0.417349938151901 166 0.110591313195101 1 1 0 -7.87964299785883 LTS-038 chr2 109006607 110373938 1367332 * c(SH3RF3-AS1, MIR4265, MIR4266, EDAR, SEPT10, CCDC138, SH3RF3, LIMS1, RANBP2, SOWAHC, GCC2) 0.237078423219898 17 0.0870258159804252 0.589781928927 887 0.236932512797771 1 1 0 -6.89934074429682 LTS-038 chr2 110373939 110375025 1087 * SOWAHC 0.339 1 NA 0.625668939937559 23 0.168152457644418 1 1 0 -5.76482479490514 LTS-038 chr2 110375026 110375187 162 * SOWAHC NA 0 NA 0.590583214425519 4 0.15758489775356 1 NA NA -5.76443286045592 LTS-038 chr2 110375188 112523928 2148741 * c(BCL2L11, MIR4267, LOC100507334, LINC01106, LINC00116, NPHP1, MIR4435-2HG, ACOXL, SOWAHC, BUB1, MALL) 0.447 1 NA 0.779443336455711 589 0.227675487317001 2 2 0 -5.77922112542661 LTS-038 chr2 112523929 112541531 17603 * ANAPC1 0.46 1 NA 0.50330526623637 86 0.210985220662238 1 1 0 -5.76606305219703 LTS-038 chr2 112541532 112541551 20 * ANAPC1 NA 0 NA 0.766 1 NA NA NA NA NA LTS-038 chr2 112541552 113092263 550712 * c(MERTK, FBLN7, ZC3H6, ANAPC1, ZC3H8, TMEM87B) 0.453164727275714 19 0.0364637928243141 0.837803964310592 723 0.298471940800496 2 1 1 -6.77220031247265 LTS-038 chr2 113092264 113092268 5 * ZC3H6 NA 0 NA 0.611 1 NA NA NA NA NA LTS-038 chr2 113092269 113819885 727617 * c(TTL, CKAP2L, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, ZC3H6, FLJ42351, IL36G, SLC20A1, RGPD8, POLR1B, CHCHD5) 0.426123712714247 27 0.125273387646466 0.701676895863983 956 0.252149022737907 2 1 1 -6.8595356216965 LTS-038 chr2 113819886 113820031 146 * IL36RN NA 0 NA 1.114 1 NA NA NA NA NA LTS-038 chr2 113820032 114386149 566118 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, PSD4, IL36RN, IL1RN, WASH2P, FAM138B, PAX8-AS1, PAX8, IL1F10, DDX11L2) 0.449886993595617 14 0.031136089092178 0.845038550386302 442 0.282058104110222 2 1 1 -6.76196135482572 LTS-038 chr2 114386150 114386163 14 * RABL2A NA 0 NA 0.587 1 NA NA NA NA NA LTS-038 chr2 114386164 114425155 38992 * RABL2A 0.411290996445787 3 0.0562968323561222 0.486039695474904 80 0.178748646095607 2 1 1 -7.11493965999344 LTS-038 chr2 114425156 114425311 156 * character(0) NA 0 NA 0.911 1 NA NA NA NA NA LTS-038 chr2 114425312 128493836 14068525 * c(RNU4ATAC, LOC100499194, MIR4783, MIR4782, ACTR3, MAP3K2, CNTNAP5, C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, ERCC3, CLASP1, NIFK-AS1, GLI2, BIN1, GPR17, TFCP2L1, GYPC, CYP27C1, INHBB, DPP10-AS1, LINC01191, MYO7B, INSIG2, CCDC93, STEAP3, WDR33, IWS1, LIMS2, PROC, DPP10, EPB41L5, PTPN4, RALB, SCTR, TSN, TMEM185B, SLC35F5, TMEM177, NIFK, SFT2D3, LINC01101, MARCO, DDX18) 0.433859484305448 100 0.0889048202894931 0.817048535415377 4712 0.420644934588685 2 1 1 -6.76670758468748 LTS-038 chr2 128493837 130988072 2494236 * c(RAB6C-AS1, TUBA3E, MED15P9, LOC389033, FAR2P1, POLR2D, WDR33, SMPD4, UGGT1, POTEF, SAP130, MZT2B, AMMECR1L, RAB6C, CCDC74B, HS6ST1) 0.441601851849033 21 0.0480932625714029 0.736859572008687 1207 0.30163693269641 2 1 1 -6.84087315344999 LTS-038 chr2 130988073 130988088 16 * character(0) NA 0 NA 1.176 1 NA NA NA NA NA LTS-038 chr2 130988089 131130917 142829 * c(PTPN18, CCDC115, IMP4) 0.363527242687459 2 0.186676190233249 0.947369364604427 201 0.262128710931343 3 2 1 -6.75066141003085 LTS-038 chr2 131130918 132291265 1160348 * c(CYP4F30P, FAR2P2, MIR4784, TUBA3D, FAM168B, LOC150776, WTH3DI, AMER3, PTPN18, GPR148, LINC01120, NOC2LP2, LOC440910, POTEE, ARHGEF4, PLEKHB2, CFC1, POTEI, CFC1B, POTEJ, MZT2A, CCDC74A) 0.437597866726582 54 0.0497873465271432 0.660590372123127 995 0.248950667462624 2 1 1 -7.12579164179458 LTS-038 chr2 132291266 132491372 200107 * C2orf27A NA 0 NA 1.124 1 NA NA NA NA NA LTS-038 chr2 132491373 135715331 3223959 * c(CCNT2-AS1, MIR663B, MIR3679, LYPD1, ACMSD, GPR39, C2orf27A, NCKAP5, C2orf27B, MGAT5, ANKRD30BL, TMEM163, CCNT2) 0.394310832744815 38 0.070513827422375 0.860665628960177 878 0.270392546579498 2 1 1 -7.17099046517676 LTS-038 chr2 135715332 136664722 949391 * c(LOC100507600, DARS, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, MAP3K19, ZRANB3, CCNT2) 0.433830093661894 21 0.102755349762248 0.682295117099592 1081 0.225887794790853 2 1 1 -7.00502475714449 LTS-038 chr2 136664723 153505285 16840563 * c(ZEB2-AS1, MIR4773-1, MIR4773-2, STAM2, NXPH2, FMNL2, LYPD6, LYPD6B, DARS, EPC2, ARL5A, MMADHC, HNMT, SPOPL, RBM43, KIF5C, RND3, TEX41, NEB, ORC4, LRP1B, RIF1, MBD5, ARHGAP15, YY1P2, TNFAIP6, PABPC1P2, CACNB4, CXCR4, GTDC1, THSD7B, KYNU, NMI, ACVR2A, ZEB2) 0.421352544694151 62 0.111922473782049 0.817972792464264 4583 0.348055086395828 2 1 1 -6.80639652645619 LTS-038 chr2 153505286 159196771 5691486 * c(LOC100144595, GALNT5, FMNL2, GALNT13, ACVR1C, CCDC148, ARL6IP6, UPP2, GPD2, KCNJ3, NR4A2, CCDC148-AS1, PRPF40A, RPRM, ERMN, ACVR1, CYTIP) 0.454506868052436 13 0.0337429954744647 0.926693273317771 1490 0.321043400540109 2 1 1 -7.4361128239813 LTS-038 chr2 159196772 159214901 18130 * CCDC148 0.32 1 NA 1.08090312122358 16 0.663430475508424 3 3 0 -5.76443049442349 LTS-038 chr2 159214902 159312984 98083 * CCDC148 0.367 1 NA 1.08574414658947 16 0.15263857092273 3 3 0 -5.76718814251356 LTS-038 chr2 159312985 159313065 81 * CCDC148 NA 0 NA 1.298 1 NA NA NA NA NA LTS-038 chr2 159313066 162281636 2968571 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, CCDC148, WDSUB1, PLA2R1, BAZ2B, ITGB6, LY75, RBMS1, MARCH7, PKP4, TANC1, DAPL1, CD302) 0.280883969252962 45 0.0435860695009937 1.52218101484451 1819 0.531341130898078 5 4 1 -6.90953167849853 LTS-038 chr2 162281637 163134136 852500 * c(DPP4, FAP, GCG, AHCTF1P1, SLC4A10, IFIH1) 0.296830320407871 6 0.0567817458930832 1.30205783880541 614 0.584356782327623 4 3 1 -6.75120610385299 LTS-038 chr2 163134137 165945464 2811328 * c(SNORA70F, SLC38A11, COBLL1, GCA, GRB14, FIGN, SCN3A, IFIH1, KCNH7) 0.300831280822599 16 0.0537585652090282 1.66557442828471 978 0.66292339632613 7 5 2 -6.94947050919327 LTS-038 chr2 165945465 176802261 10856797 * c(MIR933, SP9, NA, LOC100506124, TTC21B-AS1, PHOSPHO2-KLHL23, MIR4774, CERS6-AS1, DHRS9, KLHL41, RAPGEF4, CHN1, CHRNA1, NOSTRIN, XIRP2, BBS5, CCDC173, UBR3, ATF2, MYO3B, KLHL23, GPR155, DLX1, DLX2, DYNC1I2, CERS6, METAP1D, GAD1, GALNT3, GORASP2, STK39, LINC01305, METTL5, OLA1, MLK7-AS1, ITGA6, SP5, LRP2, LINC01124, PHOSPHO2, PDK1, ZAK, ATP5G3, SPC25, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, SP3, SSB, NA NA NA NA NA NA NA NA NA LTS-038 WIPF1, SCRN3, FASTKD1, TTC21B, METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, HAT1, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, PPIG, CIR1, TLK1) 0.269793682932112 134 0.054264658678196 1.4235011544846 7778 0.5015780270879 5 4 1 -6.957348455946 LTS-038 NA NA NA NA LTS-038 chr2 176802262 176803023 762 * LNPK NA 0 NA 1.829 1 NA NA NA NA NA LTS-038 chr2 176803024 178545736 1742713 * c(LOC100130691, MIR1246, MIR3128, HOXD-AS2, MTX2, TTC30B, HNRNPA3, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, NFE2L2, PDE11A, LNPK, AGPS, TTC30A) 0.283433082472862 25 0.0722326565112115 1.64769581208251 1246 0.834606936680194 5 4 1 -6.8170687505591 LTS-038 chr2 178545737 179394847 849111 * c(MIR548N, TTN-AS1, OSBPL6, RBM45, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, PRKRA) 0.263097061926947 18 0.044147554133244 1.36751305193174 719 0.468425770496375 5 4 1 -6.78169431896716 LTS-038 chr2 179394848 179498761 103914 * c(MIR548N, TTN-AS1, TTN) 0.275491906847742 7 0.0411211913853719 1.17020942736448 1572 0.220073157868022 5 4 1 -6.95262544760418 LTS-038 chr2 179498762 179499013 252 * c(MIR548N, TTN) NA 0 NA 1.852 1 NA NA NA NA NA LTS-038 chr2 179499014 179567401 68388 * c(MIR548N, TTN) 0.337780456027367 3 0.0659191423892433 1.40036143787068 426 0.425539184691393 6 4 2 -6.81691390861309 LTS-038 chr2 179567402 179568857 1456 * TTN NA 0 NA 1.184 1 NA NA NA NA NA LTS-038 chr2 179568858 179641411 72554 * TTN 0.271966989898018 4 0.0346650640655209 1.12729304368509 804 0.292458890018132 5 4 1 -6.89364856484172 LTS-038 chr2 179641412 179914640 273229 * c(CCDC141, TTN) 0.28837708255444 5 0.0218471966164998 1.38351939623817 426 0.474035596733463 8 6 2 -6.9689328075725 LTS-038 chr2 179914641 179914908 268 * CCDC141 NA 0 NA 1.54073307123047 7 0.49431867492636 5 NA NA -5.76441017939742 LTS-038 chr2 179914909 179966486 51578 * SESTD1 NA 0 NA 0.95 1 NA NA NA NA NA LTS-038 chr2 179966487 179966545 59 * SESTD1 0.467 1 NA 1.448 1 NA NA NA NA NA LTS-038 chr2 179966546 181925609 1959064 * c(MIR1258, UBE2E3, ZNF385B, CWC22, SESTD1) 0.413111788628518 12 0.055609569701844 1.03385155814787 495 0.272790463830749 3 2 1 -6.94856156800761 LTS-038 chr2 181925610 181927427 1818 * UBE2E3 NA 0 NA 0.671 1 NA NA NA NA NA LTS-038 chr2 181927428 182541788 614361 * c(MIR4437, UBE2E3, ITGA4, CERKL, NEUROD1) 0 1 NA 0.840440411510107 303 0.351371205199352 2 2 0 -5.77213943969292 LTS-038 chr2 182541789 191110904 8569116 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, PPP1R1C, FAM171B, FRZB, HIBCH, MSTN, SLC40A1, ITGAV, CERKL, FSIP2, NEUROD1, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, ZC3H15, OSGEPL1, SSFA2, MIR561, TFPI, WDR75, C2orf88, ZNF804A, ORMDL1) 0.40510260559026 106 0.0557962504416051 1.07009396554298 4047 0.518850710229426 3 2 1 -6.86343369230233 LTS-038 chr2 191110905 191114267 3363 * HIBCH NA 0 NA 0.745 1 NA NA NA NA NA LTS-038 chr2 191114268 191354653 240386 * c(HIBCH, INPP1, MFSD6) 0.456215780420006 4 0.0435536068158157 0.811170296051818 193 0.230809053766351 2 1 1 -6.77395718885037 LTS-038 chr2 191354654 191362209 7556 * MFSD6 NA 0 NA 1.113 1 NA NA NA NA NA LTS-038 chr2 191362210 192813818 1451609 * c(NEMP2, TMEFF2, GLS, MYO1B, NAB1, MFSD6, NABP1, STAT1, STAT4, SDPR) 0.407444594139123 15 0.0400775438844439 1.10390152761232 1157 0.652557693213 5 3 2 -6.98444705414696 LTS-038 chr2 192813819 206484621 13670803 * c(SNORD11B, LOC100130452, LOC100507140, HSPE1-MOB4, KIAA2012, ABI2, PARD3B, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, CTLA4, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, CCDC150, FAM126B, ICOS, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, C2orf66, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, STRADB, WDR12, DNAH7, SLC39A10, CYP20A1, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, RAPH1, CDK15, NA NA NA NA NA NA NA NA NA LTS-038 TMEM237, NBEAL1, CFLAR-AS1, BMPR2, TRAK2, BOLL, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, CASP10, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, CD28, BZW1) 0.402456724134983 99 0.0873725735275306 0.934094806592187 7809 0.359668518734946 3 2 1 -7.53966936920436 LTS-038 NA NA NA NA LTS-038 chr2 206484622 207026722 542101 * c(GCSHP3, PARD3B, EEF1B2, SNORD51, NDUFS1, INO80D, NRP2) 0.374536196951395 12 0.0562210868452452 1.18144733405022 685 0.443095107822625 3 2 1 -6.76054063625819 LTS-038 chr2 207026723 207026855 133 * EEF1B2 NA 0 NA 0.656 1 NA NA NA NA NA LTS-038 chr2 207026856 207834257 807402 * c(MIR3130-1, MIR3130-2, CPO, MDH1B, EEF1B2, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, SNORA41, ADAM23) 0.450983045928873 12 0.0379843468557853 0.86125160119079 817 0.275105675701061 2 1 1 -6.78455980196247 LTS-038 chr2 207834258 207908642 74385 * character(0) NA 0 NA 2.152 1 NA NA NA NA NA LTS-038 chr2 207908643 219270173 11361531 * c(LOC100130451, MIR548F2, MIR2355, LOC100507443, IDH1-AS1, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, LANCL1, CPS1, CREB1, AAMP, CRYGA, CRYGB, CRYGC, CRYGD, PKI55, KANSL1L, METTL21A, CCNYL1, GPBAR1, PIKFYVE, ERBB4, IKZF2, FN1, PNKD, ABCA12, UNC80, RUFY4, CPS1-IT1, ACADL, IDH1, IGFBP2, IGFBP5, CXCR1, CXCR2, CXCR2P1, CATIP, PLEKHM3, C2orf80, VWC2L, MIR26B, MAP2, MYL1, ATIC, SMARCAL1, MREG, PECR, NA NA NA NA NA NA NA NA NA LTS-038 PTH2R, MARCH4, BARD1, CTDSP1, RPE, RPL37A, TMBIM1, LINC00607, SLC11A1, TNP1, TNS1, DIRC3, XRCC5, FZD5, SPAG16, KLF7, TMEM169) 0.41295681939017 90 0.0646682458589369 1.01998801194194 6404 0.456955631146283 3 2 1 -6.91740212231116 LTS-038 NA NA NA NA LTS-038 chr2 219270174 220037175 767002 * c(LOC100129175, MIR3131, CRYBA2, SLC23A3, LINC00608, CYP27A1, CFAP65, CNPPD1, STK36, IHH, MIR375, PRKAG3, FEV, USP37, CTDSP1, BCS1L, RNF25, VIL1, WNT6, ZNF142, NHEJ1, WNT10A, PLCD4, CDK5R2, CNOT9, TTLL4) 0.37550075589701 18 0.102232418147383 0.901781217885049 1978 0.464568184185789 3 2 1 -6.78311628937344 LTS-038 chr2 220037176 224462032 4424857 * c(MIR4268, MIR3132, FARSB, ABCB6, SPEG, STK11IP, MOGAT1, SGPP2, TMEM198, ZFAND2B, CCDC140, DES, EPHA4, ACSL3, OBSL1, DNPEP, KCNE4, CNPPD1, GMPPA, DNAJB2, INHA, RESP18, MIR153-1, PAX3, ANKZF1, ASIC4, PTPRN, SLC4A3, TUBA4A, SCG2, ATG9A, FAM134A, GLB1L, CHPF, TUBA4B, STK16) 0.403822706459761 59 0.059179466323767 1.05366980845073 3106 0.36749728589427 3 2 1 -6.83292685362031 LTS-038 chr2 224462033 224462095 63 * SCG2 NA 0 NA 0.848 1 NA NA NA NA NA LTS-038 chr2 224462096 234204113 9742018 * c(MIR1471, MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, CHRND, CHRNG, COL4A3, COL4A4, DIS3L2, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, AGFG1, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, IRS1, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, SERPINE2, PID1, ATG16L1, DOCK10, C2orf83, MFF, PSMD1, PTMA, NA NA NA NA NA NA NA NA NA LTS-038 WDFY1, NYAP2, SNORD20, CCL20, LOC646736, PRSS56, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCARNA6, SCARNA5, SCG2, FAM124B, TM4SF20, ARMC9, EFHD1, SPHKAP, SLC19A3, ITM2C, RHBDD1, CUL3, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.401117501291736 149 0.069298084168582 0.95795444850218 6762 0.381085587443391 3 2 1 -7.11387343708883 LTS-038 NA NA NA NA LTS-038 chr2 234204114 234251098 46985 * c(ATG16L1, SAG) NA 0 NA 0.77846024643213 70 0.254162882841875 2 NA NA -5.76469824316955 LTS-038 chr2 234251099 234255145 4047 * SAG 0.208 1 NA 0.654939377353559 9 0.115266840177236 1 1 0 -5.77031540166957 LTS-038 chr2 234255146 234978746 723601 * c(LOC100286922, MSL3P1, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40, HJURP, SAG, SPP2, TRPM8, DGKD) 0.22775779576245 38 0.06671763817195 0.496858574263102 1287 0.213111717740578 1 1 0 -7.05270563592064 LTS-038 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 1.181 1 NA NA NA NA NA LTS-038 chr2 235401661 235404185 2525 * ARL4C NA 0 NA 1.00318347002199 56 0.513837646803664 3 NA NA -5.7644222271374 LTS-038 chr2 235404186 237490182 2085997 * c(ARL4C, AGAP1, SH3BP4, GBX2, ASB18, ACKR3, IQCA1) 0.200037804068871 7 0.0455793395133825 0.596648454099958 620 0.229267998079665 1 1 0 -8.06707039556222 LTS-038 chr2 237490183 237490290 108 * ACKR3 NA 0 NA 0.792 1 NA NA NA NA NA LTS-038 chr2 237490291 238009099 518809 * c(COPS8, ACKR3) 0.25 1 NA 0.816254285776017 134 0.291902685328034 2 2 0 -5.76613197846708 LTS-038 chr2 238009100 238165641 156542 * character(0) NA 0 NA 0.574 1 NA NA NA NA NA LTS-038 chr2 238165642 242815774 4650133 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, STK25, CAPN10, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, TRAF3IP1, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, PRLH, THAP4, ANKMY1, PDCD1, SCLY, ASB1, KIF1A, NA NA NA NA NA NA NA NA NA LTS-038 PPP1R7, HES6, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, D2HGDH, MLPH, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.244464970780166 203 0.069484049020847 0.562431951611262 6198 0.200453676397929 1 1 0 -6.86587070591139 LTS-038 NA NA NA NA LTS-038 chr2 242815775 243037218 221444 * LOC728323 NA 0 NA 0.644709740033495 42 0.181139033875904 1 NA NA -5.87155052014393 LTS-038 chr3 239351 367757 128407 * CHL1 0.321 1 NA 0.81603966410943 13 0.21947924964707 2 2 0 -5.76514591666098 LTS-038 chr3 367758 5260299 4892542 * c(EGOT, BHLHE40-AS1, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, ARL8B, LRRN1, SETMAR, BHLHE40, EDEM1) 0.328118638842664 37 0.0799434296984558 0.666675020816284 1683 0.230911864769786 1 1 0 -8.65499980581645 LTS-038 chr3 5260300 5292054 31755 * c(MIR4790, EDEM1) NA 0 NA 0.665618694816919 35 0.238392938815962 2 NA NA -5.7755303240145 LTS-038 chr3 6811786 9291010 2479225 * c(LMCD1-AS1, SRGAP3-AS3, GRM7, LINC00312, LMCD1, OXTR, SSUH2, RAD18, CAV3, SRGAP3) 0.193720717047964 22 0.0425364625862406 1.24807363920389 920 0.414949716732211 3 3 0 -7.79163133527659 LTS-038 chr3 9291011 9406629 115619 * c(THUMPD3, THUMPD3-AS1, SRGAP3) NA 0 NA 0.494 1 NA NA NA NA NA LTS-038 chr3 9406630 10004511 597882 * c(ARPC4-TTLL3, PRRT3-AS1, ARPC4, TADA3, IL17RE, CPNE9, THUMPD3, TTLL3, RPUSD3, PRRT3, LHFPL4, THUMPD3-AS1, OGG1, SETD5, CIDEC, MTMR14, BRPF1, CRELD1, JAGN1, IL17RC, CAMK1) 0.24704700537832 41 0.0607520450323259 0.851248832666465 1697 0.270922956316506 2 2 0 -7.32106592981299 LTS-038 chr3 10004512 10369727 365216 * c(GHRLOS, FANCD2OS, CIDECP, FANCD2, IRAK2, LOC401052, ATP2B2, GHRL, EMC3, BRK1, CIDEC, SEC13, VHL, LINC00852, TATDN2) 0.249028957237038 46 0.0784875016974379 0.740725043796762 877 0.262061397787637 1 1 0 -7.05529379240791 LTS-038 chr3 10369728 13649665 3279938 * c(MIR885, MKRN2OS, SLC6A1-AS1, ATG7, TAMM41, FBLN2, CAND2, NUP210, MKRN2, LINC00606, HRH1, ATP2B2, PPARG, TMEM40, RAF1, RPL32, SLC6A1, SLC6A11, SYN2, TIMP4, HDAC11, TSEN2, VGLL4, IQSEC1) 0.233606139192066 50 0.0649219311393087 0.861813330669725 2244 0.290615709585021 2 2 0 -7.18342435513812 LTS-038 chr3 13649666 13651002 1337 * FBLN2 NA 0 NA 1.449 1 NA NA NA NA NA LTS-038 chr3 13651003 14714173 1063171 * c(FGD5P1, CHCHD4, FBLN2, LSM3, LINC00620, TPRXL, CCDC174, SLC6A6, WNT7A, XPC, TMEM43, GRIP2) 0.237795305465699 42 0.051846978459477 0.983176445272466 995 0.316286929970413 2 2 0 -7.5615913360295 LTS-038 chr3 14714174 14724048 9875 * C3orf20 NA 0 NA 0.453 1 NA NA NA NA NA LTS-038 chr3 14724049 15709140 985092 * c(MIR4270, FGD5-AS1, SH3BP5-AS1, METTL6, FGD5, ANKRD28, CAPN7, HACL1, COL6A4P1, RBSN, MRPS25, BTD, NR2C2, COLQ, C3orf20, EAF1, SH3BP5) 0.286949340047858 20 0.0388924292456974 0.829760005615935 1338 0.249372293682067 1 1 0 -8.15764793169098 LTS-038 chr3 15709141 16301410 592270 * c(GALNT15, ANKRD28, DPH3, MIR563) NA 0 NA 0.885470511963955 368 0.321965205363768 2 NA NA -5.80063417473113 LTS-038 chr3 16301411 16629605 328195 * c(DAZL, RFTN1, DPH3, OXNAD1) 0.445 1 NA 1.10056437706302 247 0.399882854830396 3 3 0 -5.76709788933851 LTS-038 chr3 16629606 19190223 2560618 * c(MIR3714, KCNH8, DAZL, PLCL2, LOC339862, SATB1, TBC1D5) 0.38202962965454 9 0.048859492424707 1.00433483979292 582 0.507594852208609 3 2 1 -6.74656829974214 LTS-038 chr3 19190224 21460321 2270098 * c(MIR4791, SGO1-AS1, KCNH8, SGO1, PP2D1, EFHB, VENTXP7, RAB5A, KAT2B) NA 0 NA 0.868483980809225 572 0.330339777936661 2 NA NA -5.85067632519317 LTS-038 chr3 21460322 32209711 10749390 * c(MIR548AC, MIR4792, MIR4442, OSBPL10-AS1, OSBPL10, LRRC3B, LINC00691, ZCWPW2, CMC1, NEK10, STT3B, GPD1L, RBMS3, NKIRAS1, LINC00692, GADL1, ZNF860, OXSM, NGLY1, RARB, RPL15, AZI2, THRB-AS1, LINC00693, TGFBR2, THRB, TOP2B, UBE2E1, UBE2E2, ZNF385D, EOMES, SLC4A7, NR1D2) 0.356132041477218 79 0.0878217060926235 1.13062255061115 2779 0.664194303458383 3 2 1 -6.85352676372211 LTS-038 chr3 32209712 32568083 358372 * c(CMTM7, CMTM8, GPD1L, DYNC1LI1, CMTM6) 0.475072352714454 5 0.0164073154415949 1.66842178165216 213 0.662891208542287 6 3 3 -8.2864846839485 LTS-038 chr3 32568084 33645753 1077670 * c(CRTAP, CCR4, TRIM71, CLASP2, FBXL2, CNOT10, SUSD5, GLB1, DYNC1LI1, TMPPE, UBP1) 0.362048685605237 27 0.0955610960429142 1.01470992540236 1115 0.32957487900002 3 2 1 -6.76004118591682 LTS-038 chr3 33645754 33840114 194361 * c(PDCD6IP, CLASP2) 0.406 1 NA 0.980890867112981 113 0.357435542711446 3 3 0 -5.76867612200671 LTS-038 chr3 33840115 33870441 30327 * PDCD6IP NA 0 NA 1.01002924034964 36 0.293107001427319 3 NA NA -5.7647341605257 LTS-038 chr3 33870442 38317600 4447159 * c(PDCD6IP, CTDSPL, ARPP21, GOLGA4, ACAA1, C3orf35, ITGA9, MIR128-2, MIR26A1, MLH1, MYD88, VILL, PLCD1, STAC, DCLK3, LRRFIP2, SLC22A13, EPM2AIP1, TRANK1, DLEC1, OXSR1) 0.453620650504398 59 0.0389174522397977 0.809211841123841 2536 0.25922486661646 2 1 1 -6.76980704783447 LTS-038 chr3 38317601 38317762 162 * SLC22A13 NA 0 NA 0.592 1 NA NA NA NA NA LTS-038 chr3 38317763 39140993 823231 * c(ACVR2B-AS1, SCN11A, WDR48, SCN5A, SCN10A, GORASP1, ACVR2B, SLC22A14, SLC22A13, EXOG, XYLB) 0.347375878935426 4 0.225861867816002 0.695054868406173 1206 0.2241892374208 2 1 1 -7.02701026195419 LTS-038 chr3 39140994 39224857 83864 * c(XIRP1, TTC21A, CSRNP1, GORASP1) NA 0 NA 0.931038219297316 300 0.209111853273522 3 NA NA -5.78108592588461 LTS-038 chr3 39224858 40577128 1352271 * c(EIF1B, CCR8, CX3CR1, XIRP1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, RPSA, MOBP, EIF1B-AS1, SLC25A38, SNORA6, SNORA62, RPL14, ENTPD3) 0.448162629969364 18 0.0293969897529653 0.71984387365623 924 0.245243067615322 2 1 1 -6.88285941183923 LTS-038 chr3 40577129 42265970 1688842 * c(CTNNB1, TRAK1, ZNF621, ULK4) 0.443025318238105 13 0.0449858952254011 0.880366381224888 577 0.326348491780381 2 1 1 -6.82285784018732 LTS-038 chr3 42265971 50211566 7945596 * c(NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, MIR4271, KRBOX1, MIR4793, MIR4443, RBM5-AS1, MIR5193, SNRK-AS1, CCDC13-AS1, LARS2-AS1, ZNF197, RBM6, RBM5, NME6, TRAIP, ARIH2, CXCR6, CSPG5, CCR9, USP19, WDR6, TREX1, ZNF501, CCR1, CCR3, CCR5, ACKR2, COL7A1, LYZL4, KLHL40, TMEM42, CCDC12, CCDC13, CYP8B1, DAG1, CELSR3, KLHDC8B, TRAK1, DHX30, SACM1L, SCAP, LAMB2P1, EXOSC7, NBEAL2, KLHL18, LARS2, NA NA NA NA NA NA NA NA NA LTS-038 TMEM158, NDUFAF3, ALS2CL, TMIE, PTPN23, HIGD1A, AMT, XCR1, FBXW12, TCAIM, ZNF660, KIF9-AS1, GPX1, SETD2, PRSS50, GMPPB, APEH, CCDC36, PRSS42, ZNF445, IMPDH2, TOPAZ1, C3orf62, PRSS45, AMIGO3, RHOA, ZNF662, CDHR4, FAM212A, LAMB2, LTF, MIR138-1, MIR191, MAP4, TMEM89, MST1, MST1R, MYL3, NKTR, MIR425, ABHD5, SS18L2, SHISA5, ZDHHC3, TMA7, ZNF589, IP6K2, NCKIPSD, PFKFB4, PLXNB1, LZTFL1, P4HTM, SLC6A20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ELP6, SNRK, QRICH1, ANO10, DALRD3, PRKAR2A, ZKSCAN7, KIF15, PTH1R, KIAA1143, HHATL, QARS, RNF123, SEMA3F, KIF9, LIMD1-AS1, SPINK8, ARIH2OS, C3orf84, CDCP1, CCDC71, SLC26A6, SMARCC1, MIR564, TCTA, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, UBA7, USP4, UQCRC1, VIPR1, ZNF35, SLC25A20, CAMKV, LRRC2, FYCO1, CCDC51, CAMP, RTP3, LRRC2-AS1, ATRIP, NICN1, MON1A, POMGNT2, CCK, BSN, LIMD1, UCN2, CCRL2, SEC22C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ZNF502, ZBTB47, IP6K1, CDC25A) 0.438151611654327 232 0.0758208106256386 0.751640595294549 14088 0.230489826505517 2 1 1 -7.05196035647431 LTS-038 NA NA NA NA LTS-038 chr3 50211567 51440882 1229316 * c(MIR4787, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, CISH, LSMEM2, DOCK3, NAT6, GNAI2, GNAT1, RBM15B, HYAL1, C3orf18, ZMYND10, HEMK1, SEMA3F, IFRD2, MAPKAPK3, SEMA3B, MANF, HYAL3, HYAL2, CACNA2D2, DCAF1) 0.470740989087387 16 0.0385728747524302 0.824374066813597 2096 0.222844362216186 2 1 1 -7.0058422985814 LTS-038 chr3 51440883 51909621 468739 * c(IQCF4, IQCF1, RAD54L2, GRM2, IQCF2, IQCF5, IQCF3, IQCF6, TEX264, DCAF1) 0.463194331178186 3 0.0182300118851671 0.666828752766089 510 0.182475084813462 2 1 1 -7.54714304637785 LTS-038 chr3 51909622 51910960 1339 * IQCF1 NA 0 NA 0.803 1 NA NA NA NA NA LTS-038 chr3 51910961 52876956 965996 * c(SNORD19B, LINC00696, PARP3, ABHD14A-ACY1, TMEM110-MUSTN1, NISCH, TWF2, GPR62, IQCF1, GLYCTK, PPM1M, DUSP7, ALAS1, STAB1, ABHD14A, POC1A, DNAH1, GNL3, SPCS1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, MIRLET7G, MIR135A1, SMIM4, PHF7, TLR9, PBRM1, GLT8D1, SEMA3G, PCBP4, RPL29, NT5DC2, NEK4, SNORD19, SNORD69, TNNC1, WDR82, BAP1, ABHD14B, RRP9, ACY1) 0.458805869415781 65 0.0358560825223023 0.787244596047428 3478 0.22371324796415 2 1 1 -6.8244570168121 LTS-038 chr3 52876957 53921022 1044066 * c(TMEM110-MUSTN1, TMEM110, SFMBT1, CHDH, IL17RB, PRKCD, DCP1A, SELENOK, TKT, CACNA1D, RFT1, ACTR8) 0.415595057042773 25 0.0528501655626546 0.995378411834668 1167 0.278225727762317 3 2 1 -7.02390717416713 LTS-038 chr3 53921023 53921028 6 * SELENOK 0.393 1 NA 1.238 1 NA NA NA NA NA LTS-038 chr3 53921029 63820869 9899841 * c(MIR3938, PTPRG-AS1, SYNPR-AS1, ARHGEF3-AS1, CACNA2D3-AS1, RPP14, FAM107A, FAM3D, C3orf49, SNTN, SYNPR, ASB14, DNASE1L3, C3orf67, KCTD6, DNAH12, PDE12, DENND6A, FHIT, FLNB, FAM208A, ERC2, APPL1, CCDC66, LINC00698, SPATA12, ARF4, ARHGEF3, PDHB, IL17RD, PXK, FEZF2, CACNA2D3, ABHD6, LRTM1, C3orf14, PTPRG, SELENOK, ERC2-IT1, WNT5A, SLMAP, ESRG, THOC7, ACOX2, CADPS, HESX1) 0.376485212022861 107 0.0539633211377295 1.04209700755939 4614 0.379276493926534 3 2 1 -6.73744826293295 LTS-038 chr3 63820870 67048835 3227966 * c(LINC00994, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, PRICKLE2, LRIG1, ADAMTS9, ATXN7, MIR548A2, THOC7, KBTBD8, MAGI1, PSMD6) 0.368937123618596 18 0.0500235238780363 1.23404241770504 1181 0.36645543363286 3 2 1 -7.11280202883284 LTS-038 chr3 67048836 67049346 511 * KBTBD8 NA 0 NA 0.841 1 NA NA NA NA NA LTS-038 chr3 67049347 69069108 2019762 * c(MIR4272, FAM19A4, EOGT, FAM19A1, TMF1, KBTBD8, SUCLG2) 0.383175152819652 16 0.0531662486921919 0.911552292172662 453 0.355799074756538 3 2 1 -6.92220680599787 LTS-038 chr3 69069109 78711344 9642236 * c(ZNF717, MIR1284, MIR1324, MIR3136, ARL6IP5, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, LMOD3, PROK2, ROBO1, ROBO2, FAM86DP, TMF1, GXYLT2, UBA3) 0.337268458427723 242 0.0771224634583049 1.15401547165485 2696 0.452291842760485 3 2 1 -7.14851270070356 LTS-038 chr3 78711345 78717031 5687 * ROBO1 NA 0 NA 1.025 1 NA NA NA NA NA LTS-038 chr3 78717032 89530956 10813925 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.409478819573059 28 0.041700621085804 1.04927726907182 1280 0.403873588348986 3 2 1 -7.02820966170281 LTS-038 chr3 89530957 90283666 752710 * EPHA3 NA 0 NA 1.00596530676019 31 0.44088081192379 3 NA NA -5.76873248943821 LTS-038 chr3 93591838 93813171 221334 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.441 1 NA 1.11143304093998 311 0.47235358765721 3 3 0 -5.76631331432408 LTS-038 chr3 93813172 93814090 919 * NSUN3 NA 0 NA 1.17112636343017 7 0.153323032780311 4 NA NA -5.76467275013355 LTS-038 chr3 93814091 93845043 30953 * NSUN3 NA 0 NA 0.669 1 NA NA NA NA NA LTS-038 chr3 93845044 97806123 3961080 * c(MTHFD2P1, CRYBG3, GABRR3, LINC00879, EPHA6, NSUN3, OR5AC2, ARL6, MINA) 0.430839253388745 11 0.0487362101708594 0.760778695884911 672 0.277679338409287 2 1 1 -6.85465173647536 LTS-038 chr3 97806124 98225641 419518 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2) 0.422090044522262 9 0.033443152429824 0.555120162566585 225 0.309392313240105 2 1 1 -7.32907989437249 LTS-038 chr3 98225642 102198553 3972912 * c(ZBTB11-AS1, MIR548G, MIR3921, ST3GAL6-AS1, TFG, ST3GAL6, FILIP1L, COL8A1, ZPLD1, DCBLD2, FAM172BP, CPOX, LOC152225, ABI3BP, ZBTB11, GPR15, PDCL3P4, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, CLDND1, NIT2, PCNP, SENP7, RPL24, NFKBIZ, TMEM30CP, CEP97, CMSS1, ADGRG7, NXPE3, TOMM70) 0.448503968691914 40 0.0552725415206669 0.770403089646062 2708 0.323151848833646 2 1 1 -6.76518974138575 LTS-038 chr3 102198554 107941404 5742851 * c(LINC00882, ZPLD1, LINC00635, ALCAM, LINC00636, DUBR, IFT57, BBX, MIR548A3, CCDC54, CBLB, CD47) 0.472804596482469 10 0.0236924741918892 0.910064216356402 800 0.362872004966521 2 1 1 -7.88343047839388 LTS-038 chr3 107941405 108047068 105664 * c(HHLA2, IFT57) NA 0 NA 0.563 1 NA NA NA NA NA LTS-038 chr3 108047069 108268924 221856 * c(HHLA2, MYH15, KIAA1524) 0.455729742732973 7 0.0302316453563543 0.745473395562425 321 0.203611686803865 2 1 1 -6.82439549225465 LTS-038 chr3 108268925 108367876 98952 * c(KIAA1524, DZIP3) 0.463343413899679 3 0.0386910842443062 1.03472580412367 218 0.517323315336134 4 2 2 -6.87814020892242 LTS-038 chr3 108367877 108372980 5104 * DZIP3 NA 0 NA 0.845 1 NA NA NA NA NA LTS-038 chr3 108372981 108723983 351003 * c(MORC1, TRAT1, RETNLB, GUCA1C, DZIP3) 0.472746350501152 6 0.0250073322580932 0.743641797121109 240 0.252966032878127 2 1 1 -7.41468463489007 LTS-038 chr3 108723984 108855621 131638 * c(MORC1, FLJ22763) 0 1 NA 0.811593006673627 91 0.393405738353516 2 2 0 -5.76454054654559 LTS-038 chr3 108855622 109213124 357503 * c(DPPA2, FLJ22763, LINC01205, DPPA4, LINC00488) 0.483505548020974 2 0.0190918830920368 0.647600963446464 145 0.260570848059098 2 1 1 -8.66220332108741 LTS-038 chr3 110607263 113233568 2626306 * c(PVRL3-AS1, CFAP44-AS1, CD96, CD200R1, CCDC80, BTLA, SPICE1, PLCXD2, GCSAM, NEPRO, NECTIN3, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, CD200, SLC35A5, ABHD10, CFAP44, ATG3, MIR567, ZBED2, C3orf52, PHLDB2, BOC) 0.288026856029668 68 0.0592070665881799 1.39646600548378 2539 0.543458587674738 4 3 1 -6.81841179180723 LTS-038 chr3 113233569 113251132 17564 * SPICE1 NA 0 NA 1.046 1 NA NA NA NA NA LTS-038 chr3 113251133 119540678 6289546 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, MIR4446, COX17, ADPRH, IGSF11, C3orf30, DRD3, TIGIT, USF3, ZDHHC23, GAP43, ZBTB20, TUSC7, LSAMP, TIMMDC1, PLA1A, ATP6V1A, GRAMD1C, SIDT1, TMEM39A, POGLUT1, ARHGAP31, CCDC191, POPDC2, MIR568, UPK1B, ZNF80, QTRT2, NAA50, B4GALT4, NR1I2, MAATS1, CD80) 0.272375197372774 63 0.0725331641928994 1.24084994350446 2867 0.450662189589736 4 3 1 -6.90726723037381 LTS-038 chr3 119540679 121168360 1627682 * c(POLQ, FSTL1, LRRC58, GPR156, RABL3, GSK3B, GTF2E1, HGD, MIR198, NDUFB4, STXBP5L) 0.266154407510681 36 0.0823990291204939 1.39525760595035 1199 0.705889778695438 5 4 1 -6.76284429062662 LTS-038 chr3 121168361 121178861 10501 * POLQ NA 0 NA 1.055 1 NA NA NA NA NA LTS-038 chr3 121178862 121376241 197380 * c(POLQ, HCLS1, ARGFX, FBXO40) 0.290304021788175 6 0.0269499536177708 1.09459625434227 423 0.312638803216421 4 3 1 -6.98422038970129 LTS-038 chr3 121376242 121377104 863 * HCLS1 NA 0 NA 1.528 1 NA NA NA NA NA LTS-038 chr3 121377105 123213821 1836717 * c(LOC100129550, PDIA5, ADCY5, CCDC58, CSTA, DTX3L, PARP15, HACD2, FAM162A, SEC22A, GOLGB1, ILDR1, HCLS1, KPNA1, SEMA5B, WDR5B, PARP14, EAF2, SLC15A2, HSPBAP1, PARP9, CASR, DIRC2, CD86, IQCB1) 0.276021061251328 51 0.0587573474754685 1.37501353491641 2587 0.494566041989769 5 4 1 -6.86114929193531 LTS-038 chr3 123213822 123218094 4273 * HACD2 NA 0 NA 3.659 1 NA NA NA NA NA LTS-038 chr3 123218095 123687456 469362 * c(MYLK-AS1, HACD2, MYLK, CCDC14) 0.263384044319751 17 0.0529162768242549 1.87505282154216 574 0.779785340270461 5 4 1 -6.75788924391413 LTS-038 chr3 123687457 123687631 175 * character(0) NA 0 NA 1.255 1 NA NA NA NA NA LTS-038 chr3 123687632 123698531 10900 * ROPN1 NA 0 NA 0.965138352970972 62 0.428330809218598 3 NA NA -5.76466509802618 LTS-038 chr3 123698532 125691617 1993086 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.235542710585761 49 0.0421790703974357 1.65819022820314 1608 0.61384820666351 6 5 1 -6.82395230118347 LTS-038 chr3 125691618 125691689 72 * ROPN1B NA 0 NA 0.81 1 NA NA NA NA NA LTS-038 chr3 125691690 125725475 33786 * c(ROPN1B, SLC41A3) 0.248480547186924 2 0.00636396103067893 0.886946758676475 65 0.566547068025651 17 13 4 -7.1185857714179 LTS-038 chr3 125725476 125725549 74 * SLC41A3 NA 0 NA 1.293 1 NA NA NA NA NA LTS-038 chr3 125725550 128341102 2615553 * c(ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, C3orf22, DNAJB8, CHST13, KBTBD12, LINC01565, NUP210P1, GATA2, DNAJB8-AS1, KLF15, SEC61A1, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, EEFSEC, RPN1, TXNRD3NB, ZXDC, ABTB1, CHCHD6, RUVBL1, LOC90246) 0.235609569707119 21 0.0513292360764358 1.71187330103589 2162 0.48921936301299 6 5 1 -6.79802354891722 LTS-038 chr3 128341103 129694822 1353720 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, GP9, ACAD9, RAB43, H1FX-AS1, IFT122, HMCES, ISY1, KIAA1257, RHO, RPN1, LOC653712, SNORA7B, TRH, CNBP, RAB7A, EFCC1, MBD4, H1FX, EFCAB12) 0.28124958194227 45 0.0347560473627659 1.48498225659527 1743 0.475433210901784 5 4 1 -7.01739262285155 LTS-038 chr3 129694823 130394965 700143 * c(COL6A6, COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.303271395817584 24 0.0549243880784948 1.26072693584687 621 0.341073517820901 4 3 1 -6.73913557937594 LTS-038 chr3 130394966 130397744 2779 * COL6A6 NA 0 NA 1.633 1 NA NA NA NA NA LTS-038 chr3 130397745 133926299 3528555 * c(NPHP3-ACAD11, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, NUDT16P1, DNAJC13, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, SNORA58, TF, NEK11, UBA5, C3orf36, ACAD11, BFSP2) 0.28945119149484 33 0.0753495767215796 1.48755128095039 2612 0.444536250059466 5 4 1 -6.8619041380509 LTS-038 chr3 133926300 133926302 3 * RYK NA 0 NA 1.953 1 NA NA NA NA NA LTS-038 chr3 133926303 134094282 167980 * c(AMOTL2, RYK) 0.270905510452614 5 0.0221314256205966 2.1266241596824 131 0.585695295435872 12 9 3 -6.79270955466083 LTS-038 chr3 134094283 134094341 59 * character(0) 0.298 1 NA 1.333 1 NA NA NA NA NA LTS-038 chr3 134094342 136056182 1961841 * c(MIR4788, STAG1, EPHB1, ANAPC13, KY, PCCB, MSL2, PPP2R3A, CEP63) 0.303887147912124 20 0.0505083630386306 1.34691396261069 816 0.423258008315865 4 3 1 -6.74250390940762 LTS-038 chr3 136056183 136196071 139889 * c(STAG1, PCCB) 0.233654396424789 2 0.00212132034355961 1.49174248366339 120 0.377046326998528 10 8 2 -7.50372369628594 LTS-038 chr3 136196072 136573289 377218 * c(STAG1, SLC35G2) 0.375 1 NA 1.49990320984182 69 0.720321934455915 5 5 0 -5.76494807939312 LTS-038 chr3 136573290 148614393 12041104 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, CPA3, CPB1, PISRT1, AGTR1, DZIP1L, C3orf58, MRAS, U2SURP, ZBTB38, GK5, ARMC8, PCOLCE2, SLC9A9, TRIM42, PAQR9, NME9, NMNAT3, PRR23B, PRR23C, PLSCR5, FOXL2NB, NCK1, ATP1B3, A4GNT, DBR1, CLDN18, PIK3CB, PLOD2, PLS1, PLSCR1, IL20RB, XRN1, ATR, FAIM, SLC25A36, MRPS22, PLSCR2, PLSCR4, RASA2, RBP1, RBP2, BPESC1, CLSTN2, FOXL2, TFDP2, TRPC1, PRR23A, ZIC1, NA NA NA NA NA NA NA NA NA LTS-038 CEP70, SLC35G2, ESYT3, SOX14, ZIC4, SPSB4, PXYLP1, COPB2, CHST2, RNF7) 0.3443526001077 59 0.0600840731839969 1.52500201943599 5681 0.596760966308439 6 4 2 -7.30270207236133 LTS-038 NA NA NA NA LTS-038 chr3 148614394 148703750 89357 * CPA3 0.32936788881268 3 0.0252388589282479 0.907309957520582 52 0.2424097498089 4 3 1 -7.29736166960832 LTS-038 chr3 148703751 148705383 1633 * character(0) NA 0 NA 1.747 1 NA NA NA NA NA LTS-038 chr3 148705384 149237124 531741 * c(HLTF-AS1, TM4SF18, CP, WWTR1, GYG1, TM4SF1, HLTF, TM4SF4, HPS3) 0.402631592713983 19 0.0660177186919281 1.57585130689618 777 0.570890365648388 5 3 2 -6.75447333668592 LTS-038 chr3 149237125 155027633 5790509 * c(WWTR1-AS1, MIR548H2, ARHGEF26-AS1, LOC100507537, MIR5186, RNF13, MED12L, CLRN1-AS1, AADAC, ERICH6, C3orf79, DHX36, AADACP1, WWTR1, ARHGEF26, SERP1, IGSF10, GPR171, AADACL2, GPR149, ANKUB1, MBNL1-AS1, MBNL1, MME, P2RY1, COMMD2, SELENOT, PFN2, P2RY13, GPR87, SUCNR1, RAP2B, TMEM14EP, LOC646903, SIAH2, P2RY12, CLRN1, EIF2A, TSC22D2, P2RY14) 0.419650072989935 47 0.0515190973455897 1.24417638407033 2722 0.638089230580212 4 2 2 -6.89123116994965 LTS-038 chr3 155027634 155093334 65701 * character(0) NA 0 NA 0.777 1 NA NA NA NA NA LTS-038 chr3 155093335 155551453 458119 * c(PLCH1, C3orf33, SLC33A1) 0.396391912348979 3 0.0499032397077919 1.02387551477993 296 0.333314625372102 3 2 1 -6.80262857214111 LTS-038 chr3 155551454 155551641 188 * SLC33A1 NA 0 NA 1.465 1 NA NA NA NA NA LTS-038 chr3 155551642 160017126 4465485 * c(TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, KCNAB1-AS2, KCNAB1-AS1, PQLC2L, TIPARP, SCHIP1, LINC00880, IL12A, LEKR1, C3orf80, MLF1, RSRC1, LXN, CCNL1, IFT80, PTX3, RARRES1, PA2G4P4, SHOX2, MFSD1, IQCJ, SSR3, LINC00886, KCNAB1, VEPH1, GFM1, GMPS, SLC33A1) 0.389072273257014 44 0.055524959627622 1.32216813656974 2037 0.549911715422876 5 3 2 -7.08377022380957 LTS-038 chr3 160017127 160018710 1584 * IFT80 NA 0 NA 2.308 1 NA NA NA NA NA LTS-038 chr3 160018711 169525500 9506790 * c(SMC4, LOC101243545, PDCD10, OTOL1, PPM1L, WDR49, LRRC34, SPTSSB, MECOM, SLITRK3, GOLIM4, TRIM59, KPNA4, MIR15B, MIR16-2, NMD3, SERPINI1, SERPINI2, MYNN, IFT80, BCHE, LINC01330, LINC01192, SI, SCARNA7, MIR551B, TERC, ZBBX, ARL14, ACTRT3, B3GALNT1, EGFEM1P) 0.375035144216362 31 0.0561024983630911 1.50399695848616 2406 1.22406719630688 6 4 2 -6.89823461242862 LTS-038 chr3 169525501 169526336 836 * LRRC34 NA 0 NA 0.595 1 NA NA NA NA NA LTS-038 chr3 169526337 169656386 130050 * c(LRRC34, LRRIQ4, SAMD7, LRRC31) 0.391 1 NA 1.09913744998793 176 0.279545437551472 3 3 0 -5.76647036350737 LTS-038 chr3 169656387 169656440 54 * SAMD7 NA 0 NA 1.286 1 NA NA NA NA NA LTS-038 chr3 169656441 171455906 1799466 * c(LOC100128164, RPL22L1, TNIK, GPR160, SAMD7, CLDN11, PLD1, PRKCI, EIF5A2, SLC7A14, SKIL, SLC2A2, MIR569, SEC62, PHC3) 0.361845200414677 17 0.0757722496929411 1.39069915552854 1560 0.490056383065171 6 4 2 -7.02449418810735 LTS-038 chr3 171455907 171510113 54207 * PLD1 NA 0 NA 1.855 1 NA NA NA NA NA LTS-038 chr3 171510114 178954122 7444009 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, ECT2, NLGN1, NAALADL2, GHSR, TMEM212, PIK3CA, PLD1, NCEH1, ZMAT3, FNDC3B, TBL1XR1, SPATA16, TNFSF10) 0.328020589757103 39 0.0618195427874175 1.68186439982322 1636 0.6208341772154 6 4 2 -6.9498632749568 LTS-038 chr3 178954123 180466170 1512048 * c(TTC14, KCNMB3, CCDC39, NDUFB5, ZNF639, PEX5L, MFN1, MRPL47, GNB4, ACTL6A, USP13) 0.354020394719069 9 0.0380230193435503 1.35461224158677 1346 0.476374499280088 6 4 2 -7.06209613270798 LTS-038 chr3 180466171 180630123 163953 * character(0) NA 0 NA 2.927 1 NA NA NA NA NA LTS-038 chr3 180630124 182637189 2007066 * c(DNAJC19, ATP11B, SOX2-OT, FLJ46066, SOX2, FXR1) NA 0 NA 1.64640620608651 406 0.575351868529657 5 NA NA -5.77665459770662 LTS-038 chr3 182637190 183757149 1119960 * c(LINC00888, ABCC5, ABCC5-AS1, HTR3D, MCF2L2, ATP11B, LAMP3, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, MAP6D1, B3GNT5, KLHL6) 0.350139436658255 45 0.0486233929650569 1.35120894126322 1613 0.589732573206758 6 4 2 -6.91704059795613 LTS-038 chr3 183757150 183770754 13605 * HTR3D NA 0 NA 0.909 1 NA NA NA NA NA LTS-038 chr3 183770755 183824815 54061 * c(HTR3C, HTR3E) 0.371 1 NA 0.973486586358804 120 0.34674215823825 3 3 0 -5.76596658608235 LTS-038 chr3 183824816 183853033 28218 * EIF2B5 NA 0 NA 2.177 1 NA NA NA NA NA LTS-038 chr3 183853034 185205098 1352065 * c(MIR1224, ALG3, AP2M1, CLCN2, FAM131A, DVL3, EHHADH, EIF4G1, EPHB3, VPS8, C3orf70, EHHADH-AS1, POLR2H, ABCF3, PSMD2, MAGEF1, SNORD66, THPO, CHRD, EIF2B5, VWA5B2, MAP3K13, CAMK2N2, ECE2) 0.373646638616207 28 0.11271973836906 1.55986702741703 2519 0.472994030942839 5 3 2 -6.81306719367296 LTS-038 chr3 185205099 185206717 1619 * MAP3K13 0.385 1 NA 1.69509005074006 34 0.543220587746701 6 6 0 -5.7644231451409 LTS-038 chr3 185206718 189038835 3832118 * c(LOC100131635, TPRG1-AS2, ADIPOQ-AS1, IGF2BP2, RPL39L, RTP1, CRYGS, DGKG, AHSG, EIF4A2, LIPH, ETV5, LOC253573, FETUB, TPRG1, HRG, LPP-AS2, NMRAL1P1, RTP2, KNG1, FLJ42393, LPP, DNAJB11, TBCCD1, MASP1, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, TRA2B, IGF2BP2-AS1, ST6GAL1, SST, SNORA81, TMEM41A, MAP3K13, ADIPOQ) 0.389288744049665 53 0.0608225845591326 1.58589218300485 2622 0.535836666158364 5 3 2 -6.84239439364813 LTS-038 chr3 189038836 190577694 1538859 * c(MIR944, CLDN16, TMEM207, TPRG1, IL1RAP, P3H2, GMNC, TP63, CLDN1) 0.362151005689043 18 0.135635709721422 1.84178889817813 831 0.624854277672232 6 4 2 -6.7340962598145 LTS-038 chr3 190577695 190578498 804 * GMNC NA 0 NA 1.166 1 NA NA NA NA NA LTS-038 chr3 190578499 195515700 4937202 * c(DPPA2P3, LINC00887, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, XXYLT1-AS2, LRRC15, FAM43A, CPN2, MB21D2, XXYLT1, CCDC50, PYDC2, MUC20, FGF12, ACAP2, UTS2B, GP5, HES1, OSTN, ATP13A5, APOD, LINC00884, MUC4, OPA1, PPP1R2, LSG1, HRASLS, GMNC, LOC647323, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, TMEM44) 0.418760157237271 116 0.0633050964171433 1.55310800481714 2624 0.675808946190667 5 3 2 -6.73506162614651 LTS-038 chr3 195515701 196659562 1143862 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, RNF168, SLC51A, FBXO45, SENP5, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MUC4, PAK2, PCYT1A, PIGX, TFRC, CEP19) 0.417794741258274 57 0.0618379572543716 1.24587514532064 1776 0.3820550371769 4 2 2 -6.85518009613313 LTS-038 chr3 196659563 196659657 95 * SENP5 NA 0 NA 2.084 1 NA NA NA NA NA LTS-038 chr3 196659658 197023377 363720 * c(MFI2-AS1, MIR4797, NCBP2-AS2, DLG1, SENP5, NCBP2, MELTF, PIGZ) 0.358567810113109 20 0.0363022400352781 1.78344650151062 491 0.508088253140069 6 4 2 -6.7345431899206 LTS-038 chr3 197023378 197023947 570 * DLG1 NA 0 NA 1.035 1 NA NA NA NA NA LTS-038 chr3 197023948 197766946 742999 * c(MIR922, DLG1-AS1, DLG1, LOC220729, RPL35A, BDH1, IQCG, FYTTD1, LRCH3, LMLN, RUBCN) 0.404590710342516 7 0.046147795696209 1.51531609943554 783 0.433756904117375 5 3 2 -6.76531391354668 LTS-038 chr3 197766947 197770512 3566 * LMLN NA 0 NA 1.62856948766313 67 0.618145392580224 5 NA NA -5.76442259663038 LTS-038 chr4 53174 60303 7130 * c(ZNF595, ZNF718) 0.3 1 NA 0.869035809596364 13 0.342636010800727 2 2 0 -5.76466948380274 LTS-038 chr4 60304 3451109 3390806 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, NA NA NA NA NA NA NA NA NA LTS-038 SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.262159047503374 141 0.069776489306784 0.526792932997971 5823 0.189988166458685 1 1 0 -6.82050514977917 LTS-038 NA NA NA NA LTS-038 chr4 3451110 3589560 138451 * c(DOK7, LINC00955, HGFAC, LRPAP1) 0.5 1 NA 0.57013984861776 223 0.175520713841287 1 1 0 -5.76898479149753 LTS-038 chr4 3589561 4190595 601035 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.449477401586447 18 0.0450702066715005 0.529463799918399 95 0.209554886347079 2 1 1 -7.88015042715031 LTS-038 chr4 4190596 4199634 9039 * OTOP1 0.261 1 NA 0.479368156893441 15 0.10429536811155 1 1 0 -5.77311128906269 LTS-038 chr4 4199635 11400069 7200435 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, STX18-AS1, MIR378D1, MIR4798, LINC01587, MRFAP1L1, CLNK, EVC2, OTOP1, CRMP1, JAKMIP1, TRMT44, ZBTB49, DRD5, EVC, MAN2B2, CCDC96, NSG1, GPR78, LOC285484, HMX1, USP17L6P, USP17L9P, MSX1, STX18, CYTL1, SH3TC1, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, AFAP1, S100P, DEFB131, NA NA NA NA NA NA NA NA NA LTS-038 LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TMEM128, CPZ, ZNF518B, MRFAP1, LOC93622, TADA2B, HTRA3, KIAA0232, WDR1, HS3ST1) 0.269212299672506 147 0.0617049442085636 0.531601818805289 4384 0.179383077128518 1 1 0 -6.84235556460425 LTS-038 NA NA NA NA LTS-038 chr4 11400070 15071815 3671746 * c(MIR5091, CPEB2, LINC01085, BOD1L1, LINC01097, LINC01096, CPEB2-AS1, NKX3-2, RAB28, HS3ST1) 0.285398614471777 5 0.0541617946526885 0.642489723331988 678 0.216171738949443 1 1 0 -7.80225597574936 LTS-038 chr4 15071816 15341509 269694 * character(0) NA 0 NA 0.357 1 NA NA NA NA NA LTS-038 chr4 15341510 30732557 15391048 * c(MIR4275, SLIT2-IT1, LOC100505912, MIR548AX, SLC34A2, PPARGC1A, C1QTNF7, PACRGL, DHX15, ADGRA3, TAPT1, TAPT1-AS1, SEL1L3, LCORL, FBXL5, FAM184B, SEPSECS-AS1, FAM200B, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, MIR218-1, PCDH7, LAP3, SEPSECS, DCAF16, LGI2, TBC1D19, PI4K2B, CC2D2A, STIM2, GBA3, QDPR, NCAPG, CLRN2, SOD3, BST1, MIR573, MED28, KCNIP4, FGFBP2, PROM1, CCKAR, LDB2, CCDC149, SLIT2, CD38, FGFBP1 NA NA NA NA NA NA NA NA NA LTS-038 ) 0.260165887529864 88 0.0599806787072455 0.554483670227379 4568 0.224822054191914 1 1 0 -6.78180502057341 LTS-038 NA NA NA NA LTS-038 chr4 30732558 30732616 59 * PCDH7 NA 0 NA 0.715 1 NA NA NA NA NA LTS-038 chr4 30732617 33012522 2279906 * PCDH7 0.255985307207404 3 0.0315330514434194 0.76341629879891 61 0.241404652007638 1 1 0 -8.72562385562375 LTS-038 chr4 33012523 36216114 3203592 * ARAP2 0.388 1 NA 0.836301220642998 191 0.249383538545204 2 2 0 -5.82903891611933 LTS-038 chr4 36216115 49063872 12847758 * c(MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, CORIN, PTTG2, LIAS, ARAP2, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, UBE2K, APBB2, ZAR1, LOC344967, KCTD8, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, KLHL5, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, PGM2, C4orf19, CHRNA9, N4BP2, ATP10D, NA NA NA NA NA NA NA NA NA LTS-038 NWD2, SLAIN2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, TLR10, PHOX2B, FAM114A1) 0.440041500116525 218 0.073274266310976 0.759501656551629 7486 0.27505493340373 2 1 1 -6.98345129253189 LTS-038 NA NA NA NA LTS-038 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.584858549844469 5 0.030891746470538 1 NA NA -5.76506447135656 LTS-038 chr4 52709193 52714511 5319 * DCUN1D4 0.361 1 NA 1.3705908832723 17 0.16586544422584 4 4 0 -5.76471658695207 LTS-038 chr4 52714512 54968590 2254079 * c(ERVMER34-1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, RPL21P44, PDGFRA, DANCR, SGCB, USP46, RASL11B, SNORA26, FIP1L1, LNX1) 0.447533550430308 24 0.0416603763367752 0.846354970108785 1053 0.292542873687193 2 1 1 -6.78800164460905 LTS-038 chr4 54968591 55106294 137704 * PDGFRA NA 0 NA 0.712 1 NA NA NA NA NA LTS-038 chr4 55106295 68905567 13799273 * c(EPHA5-AS1, SRD5A3-AS1, THEGL, CENPC, PAICS, NMU, ARL9, AASDH, PDCL2, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, STAP1, GNRHR, TMPRSS11A, IGFBP7, KDR, KIT, LOC401134, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, KIAA1211, REST, LOC644145, TMPRSS11GP, SPINK2, SRP72, SRD5A3, NOA1, HOPX, TMPRSS11D, CLOCK, CEP135) 0.44496920619939 83 0.0445705732254941 0.766160365190671 3568 0.277909649718661 2 1 1 -6.91322033681535 LTS-038 chr4 68905568 68907557 1990 * UBA6-AS1 NA 0 NA 0.237520818032961 58 0.180321142572246 0 NA NA -5.76616195878897 LTS-038 chr4 68907558 73924029 5016472 * c(FTLP10, CSN1S2BP, ENAM, UGT2B11, SMR3B, NPFFR2, UGT2A1, TMPRSS11B, CSN1S1, CSN2, CSN3, DCK, RUFY3, AMBN, FDCSP, GC, SMR3A, SULT1B1, COX18, CSN1S2AP, GRSF1, HTN1, HTN3, JCHAIN, TMPRSS11F, SYT14P1, TMPRSS11BNL, PRR27, AMTN, MUC7, UGT2B28, ODAM, UBA6-AS1, LOC550113, UTP3, UGT2A2, OPRPN, STATH, SULT1E1, UGT2B4, UGT2B7, UGT2B17, CABS1, SLC4A4, MOB1B, ADAMTS3) 0.414477433186658 36 0.116777535755568 0.724954708470178 2642 0.293676187574821 2 1 1 -7.08447806872488 LTS-038 chr4 73924030 73927474 3445 * COX18 NA 0 NA 1.082 1 NA NA NA NA NA LTS-038 chr4 73927475 75314983 1387509 * c(PPBPP2, RASSF6, AFM, AFP, EREG, ALB, EPGN, ANKRD17, COX18, CXCL1, CXCL2, CXCL3, CXCL8, AREG, MTHFD2L, PF4, PF4V1, PPBP, CXCL6, CXCL5, LOC728040) 0.453508697507859 10 0.0338114050449122 0.847264447481805 1260 0.29640200627246 2 1 1 -6.80454338161363 LTS-038 chr4 75314984 75481958 166975 * AREG NA 0 NA 0.697 1 NA NA NA NA NA LTS-038 chr4 75481959 77051941 1569983 * c(THAP6, C4orf26, PARM1, RCHY1, NAAA, CXCL10, AREG, ART3, CXCL9, LOC441025, NUP54, PPEF2, SDAD1, CXCL11, BTC, USO1, CDKL2, G3BP2) 0.47157545449258 19 0.0170719153113428 0.704834902136685 1294 0.259024235488464 2 1 1 -8.13834029876248 LTS-038 chr4 77051942 77052314 373 * NUP54 NA 0 NA 1.425 1 NA NA NA NA NA LTS-038 chr4 77052315 79860360 2808046 * c(FAM47E, LINC01094, MIR4450, FAM47E-STBD1, CXCL13, CCNI, PAQR3, CNOT6L, ANXA3, CCDC158, SOWAHB, NUP54, BMP2K, SEPT11, SHROOM3, MRPL1, FRAS1, STBD1, CCNG2, SCARB2) 0.452389238706259 60 0.0486428788315098 0.804994873641713 2498 0.253766448886465 2 1 1 -6.74884613925484 LTS-038 chr4 79860361 79860429 69 * PAQR3 NA 0 NA 0.738 1 NA NA NA NA NA LTS-038 chr4 79860430 84388771 4528342 * c(THAP9-AS1, LINC01088, LINC00989, HPSE, HELQ, PCAT4, ANTXR2, LIN54, PAQR3, RASGEF1B, FGF5, SEC31A, C4orf22, GK2, COQ2, HNRNPD, LINC00575, TMEM150C, MRPS18C, COPS4, PLAC8, PRKG2, PRDM8, ENOPH1, BMP3, MIR575, THAP9, SCD5, FAM175A, NAA11, HNRNPDL) 0.442659277102042 46 0.0788894658752799 0.693475901420362 2127 0.27288656702158 2 1 1 -7.38563709653303 LTS-038 chr4 84388772 84390272 1501 * FAM175A NA 0 NA 0.94 1 NA NA NA NA NA LTS-038 chr4 84390273 86915911 2525639 * c(MIR4451, CDS1, WDFY3, WDFY3-AS2, NKX6-1, ARHGAP24, FAM175A, GPAT3) 0.454230160258522 9 0.032 0.814945444269403 849 0.306155660648328 2 1 1 -6.79021305973339 LTS-038 chr4 86915912 89199676 2283765 * c(LOC100506746, MIR5705, C4orf36, PPM1K, DMP1, DSPP, IBSP, SLC10A6, HSD17B13, AFF1, HSD17B11, PKD2, NUDT9, MAPK10, MEPE, KLHL8, PTPN13, SPP1, ARHGAP24, SPARCL1, ABCG2) 0.441333961182673 54 0.0406115592182615 0.673751902974425 1858 0.25342569646909 2 1 1 -7.29930440756667 LTS-038 chr4 89199677 95196118 5996442 * c(PYURF, FAM13A, PPM1K, TIGD2, MMRN1, NAP1L5, FAM13A-AS1, GPRIN3, GRID2, CCSER1, ATOH1, HERC5, HERC6, SMARCAD1, SNCA-AS1, SNCA, HERC3) 0.438337100018788 49 0.0466302214343918 0.78410885949805 1680 0.864741915760196 2 1 1 -6.74650632893279 LTS-038 chr4 95196119 95197475 1357 * SMARCAD1 NA 0 NA 0.899 1 NA NA NA NA NA LTS-038 chr4 95197476 98108547 2911072 * c(PDLIM5, HPGDS, PDHA2, SMARCAD1, BMPR1B, UNC5C) 0.441573620799781 21 0.103477349718486 0.938003779083616 834 0.399782403686645 2 1 1 -7.00350221965164 LTS-038 chr4 98108548 98108552 5 * character(0) NA 0 NA 0.764 1 NA NA NA NA NA LTS-038 chr4 98108553 100467985 2359433 * c(MIR3684, LOC100507053, TSPAN5, STPG2-AS1, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, EIF4E, METAP1, STPG2, PCNAP1, RAP1GDS1, C4orf17, TRMT10A) 0.436586720030968 21 0.0390481997633938 0.726325303263483 1179 0.281198845269794 2 1 1 -6.91748142904525 LTS-038 chr4 100467986 119431150 18963165 * c(SNHG8, MIR1243, MIR1973, GIMD1, SEC24B-AS1, LINC01216, ARHGEF38-IT1, SEC24B, CENPE, RRH, CYP2U1, DDIT4L, C4orf32, TRAM1L1, SLC9B2, SLC9B1, SGMS2, EGF, ENPEP, NPNT, LOC256880, PPA2, DAPP1, DKK2, RPL34-AS1, ANK2, H2AFZ, HADH, CFI, LRIT3, MANBA, MIR302B, MTTP, NFKB1, CISD2, LEF1, LARP7, EMCN, PITX2, GAR1, TET2, ARHGEF38, MCUB, BANK1, PPP3CA, ZGRF1, AP1AR, BDH2, INTS12, OSTC, RPL34, NEUROG2, SLC39A8, NA NA NA NA NA NA NA NA NA LTS-038 LEF1-AS1, NDST4, ETNPPL, SNORA24, TACR3, MIR577, UBE2D3, UGT8, ELOVL6, ARSJ, GSTCD, DNAJB14, ALPK1, CXXC4, PLA2G12A, CAMK2D, CASP6, COL25A1, PRSS12, LAMTOR3, FLJ20021, PAPSS1, AIMP1, TIFA, NDST3, TRMT10A, TBCK) 0.433970244278309 110 0.0671751479374405 0.824544657043556 7548 0.319998886963537 2 1 1 -6.85928497827328 LTS-038 NA NA NA NA LTS-038 chr4 119431151 119476577 45427 * CEP170P1 NA 0 NA 0.403772672897192 142 0.242622186067784 1 NA NA -5.80684911646406 LTS-038 chr4 119476578 121957559 2480982 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, PDE5A, SEC24D) 0.445557834154514 38 0.0402880100691792 0.866044294227228 1288 0.303789517921091 2 1 1 -6.83700280377904 LTS-038 chr4 121957560 121957637 78 * NDNF NA 0 NA 0.697 1 NA NA NA NA NA LTS-038 chr4 121957638 122251742 294105 * c(NDNF, TNIP3, QRFPR) 0.456909167994141 6 0.0286356421265527 0.595272008805797 167 0.171446315132922 2 1 1 -7.31546080642416 LTS-038 chr4 122251743 122253969 2227 * QRFPR NA 0 NA 0.903 1 NA NA NA NA NA LTS-038 chr4 122253970 159133910 36879941 * c(SCOC-AS1, PP12613, MIR2054, MIR3140, LINC01095, MIR4799, LINC00499, SPRY1, ANAPC10, PGRMC2, CLGN, MAB21L2, PLK4, LSM6, NUDT6, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, CTSO, ZNF827, SH3D19, MGAT4D, SPATA5, BBS12, DCLK2, FREM3, MMAA, RBM46, EDNRA, ELF2, TIGD4, TMEM154, FGA, FGB, FGF2, FGG, HSPA4L, TBC1D9, KIAA0922, TRIM2, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ARFIP1, ZNF330, GLRB, LINC01091, NA NA NA NA NA NA NA NA NA LTS-038 RNF175, GRIA2, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, ANXA2P1, ANXA5, LOC340017, PRSS48, IL2, IL15, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, NPY2R, FAM198B, ASIC5, GATB, PLRG1, EXOSC9, PCDH18, DKFZP434I0714, POU4F2, OTUD4, DCHS2, LARP1B, BBS7, FBXW7, TMEM144, MAML3, TMEM184C, PDGFC, ANKRD50, RNF150, PCDH10, IL21, ABCE1, SCOC, RPS3A, SLC7A11-AS1, LINC00616, SFRP2, HHIP, TNRC18P1, HHIP-AS1, C4orf51, TDO2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 TLR2, TRPC3, CETN4P, FAM160A1, UCP1, FAT4, ARHGAP10, MAP9, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, MND1, SLC10A7, QRFPR, KIAA1109, USP38, SMARCA5, MGARP, FHDC1, INPP4B, CCNA2, SNORD73A, PRMT9, LRAT, LRBA) 0.453807760280568 163 0.0541096140907012 0.808329185641947 12839 0.560130034167496 2 1 1 -6.75933738803127 LTS-038 NA NA NA NA LTS-038 chr4 159133911 159644501 510591 * c(C4orf46, ETFDH, PPID, TMEM144, RXFP1) 0.444609587438484 7 0.033 0.692767487392206 481 0.229978789773467 2 1 1 -6.84815786475897 LTS-038 chr4 159644502 159782889 138388 * c(PPID, FNIP2) 0.329 1 NA 0.672745103543512 71 0.160211258920556 2 2 0 -5.85823573135679 LTS-038 chr4 159782890 167024470 7241581 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, KLHL2, CPE, FAM218A, C4orf45, TRIM60, TMEM192, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, MARCH1, TMA16, FSTL5, FNIP2, MSMO1, MIR578, TLL1, TKTL2, NAF1, RAPGEF2) 0.387478653404776 34 0.0604214329056106 0.672203781525135 1688 0.254486757247945 2 1 1 -8.76066741144835 LTS-038 chr4 167024471 170508838 3484368 * c(ANXA10, PALLD, NEK1, SPOCK3, DDX60, SH3RF1, TLL1, CBR4, DDX60L) 0.408119720600889 49 0.051746504039134 0.821089447991119 1253 0.394895322402288 2 1 1 -7.03190275313934 LTS-038 chr4 170508839 170509759 921 * NEK1 NA 0 NA 0.626 1 NA NA NA NA NA LTS-038 chr4 170509760 187130271 16620512 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, SCRG1, WDR17, CLCN3, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, ACSL1, CCDC110, FAM149A, FBXO8, PDLIM3, GPM6A, CYP4V2, LINC01098, SLC25A4, HMGB2, HPGD, ANKRD37, ING2, IRF2, LOC389247, HELT, FAM92A1P2, C4orf47, GALNTL6, NEK1, AADAT, GALNT7, CLDN22, HPF1, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, NA NA NA NA NA NA NA NA NA LTS-038 SPCS3, TRAPPC11, SLED1, FLJ38576, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, SAP30, LOC90768, HAND2, MFAP3L) 0.398996547875901 124 0.0703266604399329 0.670025233410625 5126 0.277043579764038 2 1 1 -9.52479278181457 LTS-038 NA NA NA NA LTS-038 chr4 187130272 190945944 3815673 * c(ZFP42, TRIML2, F11, FAT1, FRG1, CYP4V2, F11-AS1, LOC339975, TRIML1, KLKB1, LINC01060, MTNR1A) 0.365415665730296 53 0.084116133694734 0.622118554372871 927 0.214641213860883 1 1 0 -8.1439230823305 LTS-038 chr4 190945945 190981567 35623 * character(0) NA 0 NA 0.698298551911507 24 0.882958710894755 2 NA NA -5.76490505289024 LTS-038 chr5 140347 436665 296319 * c(PDCD6, CCDC127, PLEKHG4B, LRRC14B, AHRR, SDHA) 0.271 1 NA 1.31757933633007 575 0.466063801688521 4 4 0 -5.76452718201913 LTS-038 chr5 436666 747657 310992 * c(MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, PP7080, CEP72, AHRR, SLC9A3) 0.270105616097685 8 0.0445926002830066 1.42197279610487 507 0.48812820455058 5 4 1 -6.78994817160066 LTS-038 chr5 747658 747780 123 * character(0) NA 0 NA 1.005 1 NA NA NA NA NA LTS-038 chr5 747781 796277 48497 * ZDHHC11 0.38940838869375 8 0.127893929265064 0.901823991957209 66 0.780606742229393 3 2 1 -6.73773996860445 LTS-038 chr5 796278 833976 37699 * ZDHHC11 0.138993858128127 3 0.0188237438713273 0.387746391580999 45 0.213940476003788 3 3 0 -7.19241126595743 LTS-038 chr5 833977 833991 15 * ZDHHC11 NA 0 NA 0.286 1 NA NA NA NA NA LTS-038 chr5 833992 843710 9719 * ZDHHC11 NA 0 NA 0.86785840055228 39 0.363425394742662 2 NA NA -5.764714359447 LTS-038 chr5 843711 843723 13 * ZDHHC11 0.485 1 NA 3.275 1 NA NA NA NA NA LTS-038 chr5 843724 1160520 316797 * c(LOC100506688, MIR4635, SLC12A7, BRD9, ZDHHC11, NKD2, TRIP13) 0.27651534497613 3 0.0281839197652373 1.55496151831887 479 0.581727202511366 8 6 2 -6.84212914433168 LTS-038 chr5 1160521 7831747 6671227 * c(MIR4277, MIR4278, MIR4454, MIR4457, ADCY2, PAPD7, UBE2QL1, C5orf49, C5orf38, IRX2, ADAMTS16, ICE1, LINC01018, LINC01019, SLC6A19, LINC01020, SLC6A18, FLJ33360, LOC442132, NDUFS6, IRX4, NSUN2, MRPL36, SLC6A3, SRD5A1, TERT, SDHAP3, LOC728613, IRX1, LPCAT1, CLPTM1L, MED10) 0.294498457531093 64 0.0462550699709326 1.27732131652709 2120 0.443597846223512 4 3 1 -6.78207365514863 LTS-038 chr5 7831748 9630117 1798370 * c(SNORD123, MIR4458HG, SNHG18, MIR4458, MIR4636, C5orf49, MTRR, TAS2R1, LOC729506, FASTKD3, SEMA5A) 0.314968915655364 6 0.0714385516837139 1.45836263368037 529 0.475684074747735 4 3 1 -6.80178815337604 LTS-038 chr5 9630118 9630255 138 * TAS2R1 NA 0 NA 3.337 1 NA NA NA NA NA LTS-038 chr5 9630256 23976115 14345860 * c(LOC100130744, ROPN1L-AS1, MIR4637, CDH12, CDH18, MARCH6, BASP1, FAM173B, CMBL, CTNND2, DAP, DNAH5, CCT5, FBXL7, LOC285692, LOC285696, LOC401177, LINC01194, MARCH11, MYO10, TAS2R1, PMCHL1, FAM134B, FAM105A, ANKH, PRDM9, ANKRD33B, TRIO, GUSBP1, ROPN1L, OTULIN, ZNF622) 0.279931504150789 45 0.0633848116147263 2.25060797788109 3003 0.743331334169578 8 6 2 -6.74363842917701 LTS-038 chr5 23976116 25190804 1214689 * c(CDH10, LOC340107) NA 0 NA 1.89725616378626 117 0.581497895934901 6 NA NA -5.76974779398616 LTS-038 chr5 25909443 26988328 1078886 * CDH9 0.368 1 NA 1.62470337505764 75 0.415953571993383 5 5 0 -5.77191179394103 LTS-038 chr5 26988329 34907099 7918771 * c(CDH6, MIR4279, CDH9, SUB1, C1QTNF3, TTC23L, PDZD2, AMACR, RAI14, DROSHA, LOC340113, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, C5orf22, RAD1, GOLPH3, LINC01021, TARS, LSP1P3, ADAMTS12) 0.410554048291549 41 0.0454340180921741 1.60753732673712 2441 0.556056206857714 5 3 2 -6.75686974570719 LTS-038 chr5 34907100 34950399 43300 * c(DNAJC21, BRIX1, RAD1) 0.381472611873308 2 0.00919238815542513 2.22846384567963 178 0.552082550939728 16 10 6 -6.78089609177514 LTS-038 chr5 34950400 36101263 1150864 * c(UGT3A1, CAPSL, DNAJC21, UGT3A2, IL7R, PRLR, AGXT2, SPEF2) 0.417588111712651 18 0.0434473988932391 1.46443456389102 1200 0.479452129556663 5 3 2 -6.74549116428738 LTS-038 chr5 36101264 37052003 950740 * c(NADK2, RANBP3L, NIPBL, NIPBL-AS1, SKP2, SLC1A3, MIR580, LMBRD2) NA 0 NA 1.76958011645497 763 0.557173167596936 6 NA NA -5.76513627915521 LTS-038 chr5 37052004 37052483 480 * NIPBL NA 0 NA 1.471 1 NA NA NA NA NA LTS-038 chr5 37052484 38935776 1883293 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NIPBL, GDNF, LIFR, WDR70, C5orf42, OSMR, NUP155) 0.433233297814146 19 0.0465418129307099 1.54239615589068 1394 0.485720437125408 5 3 2 -6.82323493013585 LTS-038 chr5 38935777 38938010 2234 * character(0) NA 0 NA 1.748 1 NA NA NA NA NA LTS-038 chr5 38938011 39122504 184494 * c(RICTOR, FYB) 0.403113989165295 5 0.0388394129718769 1.93468981362499 362 0.710222966056583 10 6 4 -6.77211440720542 LTS-038 chr5 39122505 39124285 1781 * FYB NA 0 NA 1.129 1 NA NA NA NA NA LTS-038 chr5 39124286 43502607 4378322 * c(CCDC152, LOC100132356, LOC100506548, LOC100506639, MROH2B, LOC153684, DAB2, NIM1K, TTC33, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6) 0.404000655875769 30 0.119398376931151 1.45807353842511 2387 0.626044822382279 5 3 2 -6.76501247028519 LTS-038 chr5 43502608 45696278 2193671 * c(NNT-AS1, PAIP1, MRPS30, FGF10, NNT, HCN1, C5orf34) NA 0 NA 1.4780012301594 505 0.562988147976407 5 NA NA -5.77470318270362 LTS-038 chr5 49692017 49694583 2567 * EMB 0.467 1 NA 0.661382258040238 49 0.247367086210223 2 2 0 -5.76530573804231 LTS-038 chr5 49694584 52390415 2695832 * c(EMB, ISL1, ITGA1, ITGA2, PELO, LOC642366, PARP8) 0.439761746781004 43 0.0357224907518352 0.793016620183247 959 0.299211841524796 2 1 1 -6.74631248293921 LTS-038 chr5 52390416 52954499 564084 * c(FST, LOC257396, ITGA2, MOCS2, NDUFS4) NA 0 NA 0.838189474794165 131 0.256246286311402 2 NA NA -5.77637666595909 LTS-038 chr5 52954500 52978871 24372 * NDUFS4 NA 0 NA 0.302 1 NA NA NA NA NA LTS-038 chr5 52978872 52979097 226 * NDUFS4 0.182 1 NA 0.48280368058704 5 0.289095140049085 1 1 0 -5.76443540039153 LTS-038 chr5 52979098 61779139 8800042 * c(MIR449C, MIR5687, CCNO, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, PART1, DIMT1, C5orf64, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, RNF138P1, KIF2A, MAP3K1, FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, SMIM15, GPBP1, MIR449B, MIR581, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.27114775158165 77 0.0541021192080538 0.564719081964776 3782 0.209847754140405 1 1 0 -6.85104496709141 LTS-038 chr5 61779140 61779789 650 * IPO11 NA 0 NA 1.154 1 NA NA NA NA NA LTS-038 chr5 61779790 61833152 53363 * IPO11 NA 0 NA 0.959998526173692 59 0.362347218453814 3 NA NA -5.76638111976092 LTS-038 chr5 61833153 61846117 12965 * IPO11 NA 0 NA 0.386 1 NA NA NA NA NA LTS-038 chr5 61846118 68706460 6860343 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, CCDC125, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, TRAPPC13, CCNB1, MRPS36) 0.251731843131637 28 0.0581855611282518 0.596993247018562 3195 0.241163646290205 1 1 0 -7.28737138328951 LTS-038 chr5 68706461 68709888 3428 * RAD17 NA 0 NA 0.301 1 NA NA NA NA NA LTS-038 chr5 68709889 68862424 152536 * c(OCLN, MARVELD2, RAD17, GTF2H2C) 0.222038589438579 4 0.0446168876846723 0.436764612713696 176 0.245020626483971 1 1 0 -7.43496799951007 LTS-038 chr5 68862425 70307219 1444795 * c(GUSBP9, NA, SMA4, SMA5, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) NA 0 NA 0.210037270179815 80 0.241866246120988 0 NA NA -7.12903624438292 LTS-038 chr5 70307220 70307456 237 * c(GUSBP9, NAIP) NA 0 NA 0.445 1 NA NA NA NA NA LTS-038 chr5 70307457 78809043 8501587 * c(GUSBP9, NCRUPAR, MIR4804, MIR4803, COL4A3BP, LHFPL2, NSA2, IQGAP2, FCHO2, JMY, TMEM171, TMEM174, POC5, CRHBP, ZNF366, S100Z, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, BHMT2, ANKRD31, FAM169A, GTF2H2, DMGDH, HEXB, HMGCR, TNPO1, ARSB, MAP1B, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ANKRA2, BHMT, MCCC2, ARHGEF28, LOC647859, SNORA47, BTF3, TBCA, ZBED3-AS1, ANKDD1B, PTCD2, UTP15, ZBED3, GFM2, NA NA NA NA NA NA NA NA NA LTS-038 ENC1, AP3B1, PDE8B, HOMER1, SCAMP1, CARTPT) 0.251556987170472 117 0.0662485573638034 0.571880452690967 5426 0.424015454462055 1 1 0 -6.83461051808267 LTS-038 NA NA NA NA LTS-038 chr5 78809044 78982385 173342 * c(PAPD4, HOMER1) 0.221 1 NA 0.719986095925012 112 0.206431928849176 2 2 0 -5.79058229740128 LTS-038 chr5 78982386 79057868 75483 * c(PAPD4, CMYA5) 0.312068240433135 26 0.0356359585034771 0.447651058409786 281 0.095275373241537 1 1 0 -7.6626643612745 LTS-038 chr5 79057869 79058897 1029 * CMYA5 NA 0 NA 0.619 1 NA NA NA NA NA LTS-038 chr5 79058898 86627326 7568429 * c(CKMT2-AS1, MIR4280, MTRNR2L2, MIR3607, MIR3977, EDIL3, CKMT2, ACOT12, COX7C, HAPLN1, VCAN, TMEM167A, FAM151B, DHFR, CMYA5, SSBP2, SERINC5, RNU5E-1, NBPF22P, ANKRD34B, MTX3, CRSP8P, MSH3, RASA1, RASGRF2, RPS23, LOC644936, SCARNA18, THBS4, XRCC4, ATG10, ZCCHC9, SPZ1, ATP6AP1L, ZFYVE16) 0.248554638169756 51 0.0657267128670963 0.576267514587525 2600 0.248756419138061 1 1 0 -6.9880823429883 LTS-038 chr5 86627327 86628275 949 * RASA1 NA 0 NA 1.004 1 NA NA NA NA NA LTS-038 chr5 86628276 89807841 3179566 * c(MIR3660, TMEM161B-AS1, POLR3G, CETN3, MBLAC2, TMEM161B, MIR9-2, MEF2C, RASA1, LINC00461, CCNH) 0.266487292384619 11 0.0521218851260285 0.665199444833257 785 0.252010629208073 1 1 0 -7.70721748269645 LTS-038 chr5 89807842 96367679 6559838 * c(ARRDC3-AS1, MIR2277, POLR3G, LYSMD3, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, ADGRV1, SLF1, TTC37) 0.269509160600055 59 0.0657198506742641 0.564719932881496 3387 0.198520866627557 1 1 0 -6.83150443165609 LTS-038 chr5 96367680 101570514 5202835 * c(LOC100133050, LOC100289230, CHD1, LIX1, RGMB, FAM174A, SLCO4C1, RGMB-AS1, RIOK2, ST8SIA4) 0.2290246719384 17 0.0519482208266926 0.656925677747772 819 0.273322381701759 1 1 0 -8.233579121033 LTS-038 chr5 101570515 101585347 14833 * SLCO4C1 0.358 2 0.167584307141212 0.393132409220338 62 0.148585472093293 0 0 0 -6.92280092664314 LTS-038 chr5 101585348 131972887 30387540 * c(KIAA1024L, LOC100289673, TMED7-TICAM2, MIR3936, STARD4-AS1, LOC100505841, MIR4633, MIR4460, LINC01023, NREP-AS1, RAD50, CDO1, EPB41L4A-AS1, MARCH3, AP3S1, SLCO6A1, PRRC1, ZNF474, STARD4, WDR36, CSF2, CSNK1G3, MGC32805, CEP120, SRFBP1, CCDC112, DMXL1, DCP2, ADAMTS19, EFNA5, LVRN, FBN2, FER, PPIP5K2, ACSL6, TNFAIP8, DTWD2, SLC27A6, SNX24, HINT1, APC, HSD17B4, CHSY3, FAM170A, SLCO4C1, TICAM2, IL3, IL5, NA NA NA NA NA NA NA NA NA LTS-038 IRF1, KCNN2, TEX43, LMNB1, C5orf63, LOX, MAN2A1, MCC, C5orf56, ALDH7A1, PAM, TMED7, ISOC1, PRR16, COMMD10, RAPGEF6, PHAX, PGGT1B, EPB41L4A-AS2, PPIC, GIN1, LOC553103, TRIM36, FEM1C, CDC42SE2, ZNF608, SEMA6A, CTXN3, EPB41L4A, TMEM232, ARL14EPL, LINC01184, FBXL17, YTHDC2, SNORA13, SLC12A2, SLC22A4, SLC22A5, GRAMD3, SNX2, SRP19, LINC00992, MEIKIN, REEP5, CAMK4, NUDT12, TSSK1B, MEGF10, TSLP, PDLIM4, P4HA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 C5orf30, LYRM7, SLC25A46, ATG12, NREP, PRDM6, RAB9BP1, FTMT, SNCAIP, FNIP1, PJA2) 0.263072282371695 230 0.0652531894662864 0.592460368081691 10828 0.23063236305839 1 1 0 -8.37403222023565 LTS-038 NA NA NA NA LTS-038 chr5 131972888 134986226 3013339 * c(MIR1289-2, MIR3661, MIR4461, C5orf66, RAD50, SEC24A, KIF3A, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, FSTL4, SEPT8, JADE2, GDF9, UQCRQ, AFF4, HSPA4, C5orf66-AS2, LOC340074, CATSPER3, IL4, IL13, NEUROG1, TIFAB, SAR1B, CDKL3, PITX1, ZCCHC10, PPP2CA, C5orf15, CCNI2, SKP1, TCF7, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, CXCL14, H2AFY, DDX46) 0.240149373885949 33 0.0466488331725847 0.533906341649209 3387 0.190203686387521 1 1 0 -7.00008431266393 LTS-038 chr5 134986227 134989608 3382 * LOC340074 NA 0 NA 0.496057435865703 15 0.202178304144304 1 NA NA -5.76488657735181 LTS-038 chr5 134989609 135170220 180612 * LOC340074 NA 0 NA 1.171 1 NA NA NA NA NA LTS-038 chr5 135170221 135178124 7904 * SLC25A48 0.076 1 NA 1.39010476022831 13 0.578441229867181 4 4 0 -5.76447101138821 LTS-038 chr5 135178125 140222106 5043982 * c(SRA1, VTRNA2-1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, SLC25A48, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, FBXL21, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, HARS, HSPA9, TMEM173, IK, IL9, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, WDR55, ANKHD1, TMCO6, PCDHA8, PCDHA7, NA NA NA NA NA NA NA NA NA LTS-038 PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, TRPC7, PURA, ECSCR, SIL1, SPOCK1, TGFBI, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, SMAD5-AS1, MATR3, CDC25C, SLC23A1) 0.104406064539926 88 0.035362128701345 1.31183061981044 5403 0.524948799860804 4 4 0 -6.77314524623118 LTS-038 NA NA NA NA LTS-038 chr5 140222107 140222569 463 * c(PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1) NA 0 NA 0.093 1 NA NA NA NA NA LTS-038 chr5 140222570 140240575 18006 * c(PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 0.173317415040835 112 0.181043023214998 0 NA NA -5.85682979765112 LTS-038 chr5 140240576 140240674 99 * c(PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) NA 0 NA 1.057 1 NA NA NA NA NA LTS-038 chr5 140240675 140553623 312949 * c(PCDHB5, PCDHB1, PCDHB17P, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHA9) 0.0947491537757472 17 0.0270935199545835 1.23727327095717 722 0.418060953744722 5 5 0 -6.78829398944494 LTS-038 chr5 140553624 140554691 1068 * PCDHB7 NA 0 NA 0.583 1 NA NA NA NA NA LTS-038 chr5 140554692 140559849 5158 * c(PCDHB8, PCDHB7) 0.232394108766743 4 0.080080688475229 0.498345517240314 73 0.350956113614522 6 5 1 -6.78596091536452 LTS-038 chr5 140559850 140559914 65 * PCDHB8 0.073 1 NA 3.782 1 NA NA NA NA NA LTS-038 chr5 140559915 140789275 229361 * c(PCDHB18P, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB16, TAF7, SLC25A2, PCDHB19P, PCDHGB4, PCDHGA8) 0.101782669309791 33 0.0329362619081894 1.20441259838252 1208 0.499306319214497 5 5 0 -6.79298287322322 LTS-038 chr5 140789276 140789419 144 * c(PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB4, PCDHGA8) NA 0 NA 1.646 1 NA NA NA NA NA LTS-038 chr5 140789420 147513647 6724228 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, GPR151, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, DPYSL3, STK32A, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, C5orf46, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, NA NA NA NA NA NA NA NA NA LTS-038 PCDHGA1, PCDHGB8P, KCTD16, HMHB1, GRXCR2, ARAP3, SPINK1, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.0935440328632508 58 0.0356177571149501 1.38832428081532 4302 0.47626751250018 5 5 0 -6.9509899808695 LTS-038 NA NA NA NA LTS-038 chr5 147513648 147516508 2861 * SPINK5 NA 0 NA 0.962 1 NA NA NA NA NA LTS-038 chr5 147516509 148411244 894736 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.107530578296765 9 0.0206700266085944 1.19160576771646 570 0.450094707499285 4 4 0 -6.80348014514052 LTS-038 chr5 148411245 148414036 2792 * SH3TC2 NA 0 NA 2.316 1 NA NA NA NA NA LTS-038 chr5 148414037 149513394 1099358 * c(PPARGC1B, AFAP1L1, GRPEL2, CSF1R, CSNK1A1, SLC26A2, ABLIM3, HMGXB3, IL17B, ARHGEF37, MIR143, PDE6A, PDGFRB, CARMN, PCYOX1L, SH3TC2, TIGD6) 0.101158451790162 47 0.0255571044412128 1.51685681522412 1981 0.572737384214464 5 5 0 -6.76741227392425 LTS-038 chr5 149513395 150516883 1003489 * c(TNIP1, CDX1, SYNPO, ZNF300P1, GPX3, ANXA6, NDST1, ARSI, IRGM, DCTN4, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CAMK2A, SMIM3, ZNF300, MYOZ3, CD74) 0.108464418765094 43 0.0341581722417493 1.34307672565407 1887 0.391781603694398 4 4 0 -6.74987655972046 LTS-038 chr5 150516884 150947719 430836 * c(SLC36A2, SLC36A1, FAT2, CCDC69, GM2A, SLC36A3, ANXA6) 0.100206757326226 40 0.0269808930494079 1.17332537311626 907 0.572174725613398 5 5 0 -6.81579354897814 LTS-038 chr5 150947720 151040884 93165 * c(FAT2, SPARC) 0.159 1 NA 1.16714467199978 23 0.27456835689623 3 3 0 -5.77264632588199 LTS-038 chr5 151040885 151191437 150553 * c(LOC100652758, G3BP1, ATOX1, SPARC) 0.186479743505938 9 0.0326266762021509 1.05535412030272 453 0.290516588390857 2 2 0 -6.81620231590971 LTS-038 chr5 151191438 156194465 5003028 * c(MIR3141, FAXDC2, FAM114A2, LARP1, GEMIN5, GLRA1, KIF4B, GRIA1, MRPL22, SAP30L-AS1, MFAP3, GALNT10, NMUR2, SGCD, SAP30L, CNOT8, HAND1) 0.147566007128735 39 0.0401452491042343 0.979884092681452 1780 0.312882057810169 3 3 0 -6.8947878231721 LTS-038 chr5 156194466 156277527 83062 * SGCD NA 0 NA 0.716 1 NA NA NA NA NA LTS-038 chr5 156277528 156670771 393244 * c(PPP1R2P3, FAM71B, HAVCR1, ITK, HAVCR2, TIMD4, MED7) 0.132562125199075 6 0.0245064617329117 0.789498321993165 382 0.388169910551393 3 3 0 -6.92333699219141 LTS-038 chr5 156670772 172744223 16073452 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3912, MIR378E, SLU7, SOX30, PWWP2A, C1QTNF2, C5orf58, LSM11, NUDCD2, UBLCP1, ADRA1B, NKX2-5, CREBRF, RNF145, DOCK2, DUSP1, EBF1, FABP6, FOXI1, ATP10B, WWC1, FBXW11, GABRA1, GABRA6, GABRB2, GABRG2, GABRP, LINC01366, CYFIP2, MAT2B, EFCAB9, SH3PXD2B, LOC285626, LOC285627, LOC285629, TLX3, KCNIP1, HMMR, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, LCP2, MIR103A1, NA NA NA NA NA NA NA NA NA LTS-038 MIR146A, MIR218-2, FNDC9, NPM1, RPL26L1, NEURL1B, SPDL1, THG1L, ERGIC1, TENM2, RARS, ZBED8, RANBP17, SLIT3, BNIP1, SNORA74B, STK10, MIR585, TTC1, CCNJL, PANK3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, UBTD2, PTTG1, CLINT1) 0.130905181602298 117 0.0608367179272351 1.03123713890598 6868 0.394311460502916 3 3 0 -6.76930421508605 LTS-038 NA NA NA NA LTS-038 chr5 172744224 173388311 644088 * c(LOC285593, CPEB4, STC2, BOD1) 0.159264560422693 8 0.0197393732712783 1.30130755317726 330 0.56340588513652 9 8 1 -7.26043782124725 LTS-038 chr5 173388312 173426825 38514 * C5orf47 NA 0 NA 1.25975087670756 34 0.202073566755926 4 NA NA -5.76502349257553 LTS-038 chr5 173426826 173426886 61 * C5orf47 NA 0 NA 1.169 1 NA NA NA NA NA LTS-038 chr5 173426887 173527846 100960 * c(C5orf47, HMP19) 0.088 1 NA 0.994168628665461 24 0.479687511506869 3 3 0 -5.7652047264005 LTS-038 chr5 173527847 175386685 1858839 * c(MIR4634, CPLX2, DRD1, HRH2, FLJ16171, MSX2, HMP19, THOC3, SFXN1) 0.12023161400685 12 0.049429165724726 0.924993047230767 472 0.377093382472673 3 3 0 -6.95816346212867 LTS-038 chr5 175386686 175394264 7579 * THOC3 NA 0 NA 0.341825616579667 89 0.316418128951088 0 NA NA -5.76537191997308 LTS-038 chr5 175394265 175395032 768 * THOC3 NA 0 NA 2.877 1 NA NA NA NA NA LTS-038 chr5 175395033 175740714 345682 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) NA 0 NA 1.11417186281846 142 0.689436450275973 3 NA NA -5.76592957176371 LTS-038 chr5 175740715 176295305 554591 * c(MIR4281, GPRIN1, CLTB, HIGD2A, RNF44, FAF2, EIF4E1B, TSPAN17, ARL10, SIMC1, NOP16, CDHR2, KIAA1191, SNCB, UNC5A) 0.0783948919993998 18 0.0337468952820325 1.4414995201621 1084 0.481020549083914 6 6 0 -6.81128185467048 LTS-038 chr5 176295306 176724053 428748 * c(FGFR4, ZNF346, HK3, UIMC1, NSD1, UNC5A) 0.0910022536144 20 0.0278111583058993 1.19587664335577 765 0.522396171967792 5 5 0 -6.81004241463832 LTS-038 chr5 176724054 176724056 3 * NSD1 NA 0 NA 1.35 1 NA NA NA NA NA LTS-038 chr5 176724057 177031548 307492 * c(RGS14, LMAN2, B4GALT7, DBN1, F12, PRELID1, GRK6, PRR7-AS1, PFN3, DDX41, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.110739305044845 17 0.0263818119165458 1.35827279455135 1190 0.408759507055875 4 4 0 -6.74160980076834 LTS-038 chr5 177031549 177031951 403 * B4GALT7 NA 0 NA 0.854 1 NA NA NA NA NA LTS-038 chr5 177031952 177474268 442317 * c(B4GALT7, LOC202181, FAM153A, PROP1, FAM153C, LOC728554) 0.0978541114296763 6 0.0361164782336263 0.959087510858345 277 0.455484794765931 4 4 0 -6.96082665063742 LTS-038 chr5 177474269 177482580 8312 * FAM153C NA 0 NA 2.653 1 NA NA NA NA NA LTS-038 chr5 177482581 180374817 2892237 * c(MIR1229, HEIH, MGAT4B, ZNF354B, OR2Y1, TBC1D9B, N4BP3, FLT4, RASGEF1C, ZNF454, C5orf60, GRM6, ZNF354C, HNRNPAB, HNRNPH1, ZNF879, LTC4S, MGAT1, MIR340, C5orf45, NHP2, RNF130, MAPK9, CLK4, CNOT6, ZFP62, GMCL1P1, CBY3, RMND5B, ZNF354A, AACSP1, LINC00847, BTNL8, ZFP2, RUFY1, CANX, PHYKPL, SQSTM1, COL23A1, SCGB3A1, ADAMTS2, MAML1, GFPT2) 0.103200524845295 92 0.0462263524080339 1.25898027641476 3639 0.476655242878749 4 4 0 -6.77128779872717 LTS-038 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 0.272 1 NA NA NA NA NA LTS-038 chr5 180375294 180430869 55576 * c(BTNL3, BTNL8) 0.066 1 NA 0.259711879602701 67 0.180827801523186 0 0 0 -5.78138142263247 LTS-038 chr5 180430870 180430924 55 * BTNL3 NA 0 NA 1.36 1 NA NA NA NA NA LTS-038 chr5 180430925 180626031 195107 * c(BTNL3, BTNL9, OR2V1, OR2V2, TRIM7) 0.0774820864497637 11 0.0217272346899629 1.24797777464353 243 0.764696322047227 6 6 0 -6.78455024121888 LTS-038 chr5 180626032 180688111 62080 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 1.2979084001982 297 0.388265900013971 4 NA NA -5.76441248417876 LTS-038 chr6 203389 349317 145929 * DUSP22 0.237 1 NA 0.769470556067463 64 0.23752446824669 2 2 0 -5.76656974168783 LTS-038 chr6 349318 367484 18167 * DUSP22 0.271345738261162 4 0.102363730555961 0.634890001180296 53 0.207985848575203 1 1 0 -6.73869378370937 LTS-038 chr6 367485 391716 24232 * character(0) NA 0 NA 2.555 1 NA NA NA NA NA LTS-038 chr6 391717 656163 264447 * c(HUS1B, IRF4, EXOC2) 0.439223966583783 10 0.0479393134888035 0.952686814572971 332 0.322394081859086 2 1 1 -6.78847108644576 LTS-038 chr6 656164 656262 99 * c(HUS1B, EXOC2) NA 0 NA 1.01 1 NA NA NA NA NA LTS-038 chr6 656263 2836480 2180218 * c(GMDS-AS1, HUS1B, LINC01600, SERPINB1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, EXOC2, WRNIP1, FOXQ1) 0.410667593751996 14 0.0397752615148088 1.22320866626892 507 0.502515696188684 5 3 2 -7.02268871826022 LTS-038 chr6 2836481 2838063 1583 * SERPINB1 NA 0 NA 1.747 1 NA NA NA NA NA LTS-038 chr6 2838064 3045848 207785 * c(MIR4645, SERPINB1, SERPINB9P1, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9) 0.323170386857607 9 0.0447998635910622 1.7548618137765 242 0.38972883680288 7 5 2 -6.76703230656452 LTS-038 chr6 3045849 3045953 105 * character(0) NA 0 NA 1.057 1 NA NA NA NA NA LTS-038 chr6 3045954 7182121 4136168 * c(MIR3691, LOC100507194, ECI2, FARS2, RPP40, F13A1, PXDC1, FAM217A, FAM50B, LY86-AS1, TUBB2B, PSMG4, C6orf201, NRN1, LYRM4, RREB1, SLC22A23, PPP1R3G, BPHL, TUBB2A, RIPK1, PRPF4B, CDYL, LY86) 0.463001972214344 22 0.0269936660840651 1.25697609643318 1534 0.388330730066529 4 2 2 -7.01183169593418 LTS-038 chr6 7182122 10393871 3211750 * c(SCARNA27, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, SNRNP48, DSP, PIP5K1P1, CAGE1, SLC35B3, RREB1, BLOC1S5, BMP6, SSR1, HULC, TXNDC5, RIOK1, EEF1E1) 0.440319502427676 41 0.0411958439769792 1.56777811814051 1542 0.515373743505084 6 3 3 -6.88122375683692 LTS-038 chr6 10393872 10396974 3103 * TFAP2A NA 0 NA 2.653 1 NA NA NA NA NA LTS-038 chr6 10396975 10415572 18598 * c(TFAP2A-AS1, TFAP2A) 0.232225873529459 2 0.0261629509039023 2.97197055147391 119 1.31780521018787 10 8 2 -6.73345865846694 LTS-038 chr6 10415573 10419596 4024 * c(TFAP2A-AS1, TFAP2A) NA 0 NA 2.265 1 NA NA NA NA NA LTS-038 chr6 10419597 20483206 10063610 * c(TMEM170B, LOC100130357, RANBP9, ELOVL2-AS1, MIR4639, MIR5689, CAP2, MBOAT1, E2F3, EDN1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, SIRT5, RNF144B, GCNT2, GMPR, MYLIP, HIVEP1, ID4, C6orf52, JARID2, NHLRC1, STMND1, ERVFRD-1, MAK, NEDD9, TBC1D7, NOL7, FAM8A1, TMEM14C, GFOD1, ELOVL2, PAK1IP1, ATXN1, MCUR1, KIF13A, MIR548A1, TFAP2A, TPMT, DEK, TMEM14B, DTNBP1, ADTRP, GCM2, CD83, NUP153 NA NA NA NA NA NA NA NA NA LTS-038 ) 0.397730965052534 78 0.0445806747754738 1.90744031686249 4693 0.643597369448041 7 4 3 -7.11351590126922 LTS-038 NA NA NA NA LTS-038 chr6 20483207 20486935 3729 * E2F3 NA 0 NA 1.266 1 NA NA NA NA NA LTS-038 chr6 20486936 24547027 4060092 * c(NRSN1, HDGFL1, E2F3, GPLD1, KAAG1, CASC15, DCDC2, CDKAL1, PRL, MRS2, SOX4, NBAT1, ALDH5A1, KIAA0319) 0.401698929328204 26 0.0518428542661526 1.46133471280506 1037 1.41783912096668 5 3 2 -6.7772448090565 LTS-038 chr6 24547028 24570259 23232 * KIAA0319 0 1 NA 1.2808345488476 59 0.582407335046391 4 4 0 -5.76442108727541 LTS-038 chr6 24570260 26017401 1447142 * c(SLC17A4, SLC17A2, TRIM38, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H1A, HIST1H2APS1, GMNN, TDP2, CARMIL1, ACOT13, SLC17A1, C6orf62, CMAHP, FAM65B, KIAA0319) 0.380469587929055 36 0.040636093113045 1.38636742216416 1282 0.533236483487178 3 2 1 -6.95990926037044 LTS-038 chr6 26017402 26365593 348192 * c(BTN3A2, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, HIST1H3F) 0.371312414968406 23 0.0310299485579638 1.92184953595965 563 0.616456844535727 6 4 2 -6.80961594786451 LTS-038 chr6 26365594 26365595 2 * BTN3A2 0.335 1 NA 0.513 1 NA NA NA NA NA LTS-038 chr6 26365596 27425160 1059565 * c(LINC00240, LOC100270746, MIR3143, PRSS16, BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, ZNF391, GUSBP2, VN1R10P, HCG11, BTN2A3P, BTN1A1, ZNF184, ZNF204P, ZNF322, HIST1H4I, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ, POM121L2) 0.359751384734701 22 0.0400708247440828 1.35959565107435 1142 0.545701730404195 6 4 2 -6.89992992351343 LTS-038 chr6 27425161 27425185 25 * ZNF184 0.342 1 NA 2.214 1 NA NA NA NA NA LTS-038 chr6 27425186 27861721 436536 * c(LOC100131289, LINC01012, HIST1H1B, ZNF184, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L) 0.373348554242851 3 0.00519615242270664 1.86718417872069 232 0.521365754121645 11 7 4 -7.13164538823913 LTS-038 chr6 27861722 27878947 17226 * character(0) NA 0 NA 1.098 1 NA NA NA NA NA LTS-038 chr6 27878948 28967716 1088769 * c(ZSCAN16-AS1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, OR2B2, PGBD1, ZSCAN12) 0.411650720274111 13 0.0257223837472546 1.35866974406004 1255 0.424771579962112 5 3 2 -6.80797957844054 LTS-038 chr6 28967717 29645170 677454 * character(0) 0.377030764766234 24 0.0429635630927323 1.13734005638853 819 0.399395541773505 3 2 1 -6.75110825049466 LTS-038 chr6 29645171 29691013 45843 * character(0) NA 0 NA 1.486 1 NA NA NA NA NA LTS-038 chr6 29691014 30993884 1302871 * character(0) 0.367885418488593 127 0.0719601363071793 1.49068529932702 2906 1.32160636489177 6 4 2 -6.75601106344725 LTS-038 chr6 30993885 30996049 2165 * character(0) 0.38295953613137 4 0.00736545993132815 0.685458999070289 48 0.34144779293681 16 10 6 -6.77127757410407 LTS-038 chr6 30996050 30996132 83 * character(0) 0.391 1 NA 1.163 1 NA NA NA NA NA LTS-038 chr6 30996133 31977391 981259 * character(0) 0.367107410846275 202 0.0546880412707984 1.50710470316191 3763 1.08443901485439 6 4 2 -6.75852464226142 LTS-038 chr6 31977392 31977463 72 * character(0) NA 0 NA 2.4 1 NA NA NA NA NA LTS-038 chr6 31977464 31996342 18879 * character(0) 0.332923322381789 3 0.0571780843797108 3.0082908768975 38 1.37402723821304 19 13 6 -6.74234374756255 LTS-038 chr6 31996343 31996420 78 * character(0) NA 0 NA 0.719 1 NA NA NA NA NA LTS-038 chr6 31996421 32013848 17428 * character(0) 0.310478545386283 6 0.0680911154263168 1.17983584155515 148 0.564040720156993 4 3 1 -6.73516790678696 LTS-038 chr6 32013849 32549368 535520 * HLA-DRB5 0.354990655842733 124 0.0699871494517519 1.51904624956215 1534 0.486474188408199 6 4 2 -6.77664995329872 LTS-038 chr6 32549369 32549392 24 * HLA-DRB5 0.263 1 NA 1.418 1 NA NA NA NA NA LTS-038 chr6 32549393 32552127 2735 * HLA-DRB5 0.314135462455988 18 0.082741664272215 1.74374769717314 31 0.739037506868995 7 5 2 -6.73358864126762 LTS-038 chr6 32552128 32552147 20 * HLA-DRB5 0.229 1 NA 1.72392039061331 3 0.885188680451801 6 6 0 -5.764410165466 LTS-038 chr6 32552148 32629314 77167 * c(HLA-DQA1, HLA-DRB5) 0.270775883031753 66 0.0568947664747334 1.7619780398474 142 0.923373061150765 12 9 3 -6.75506297829724 LTS-038 chr6 32629315 32629718 404 * character(0) 0.371 1 NA 1.67442794627481 5 0.423975824782499 5 5 0 -5.76441769146315 LTS-038 chr6 32629719 35053670 2423952 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, IP6K3, C6orf1, LEMD2, ANKS1A, SPDEF, GRM4, PACSIN1, HMGA1, ITPR3, LINC00336, MLN, GGNBP1, UHRF1BP1, BAK1, RPS10, C6orf106, SNRPC, TAF11, UQCC2) 0.354350385328393 127 0.0811035658984845 1.63456383921683 4270 4.51300585582744 6 4 2 -6.73697687839039 LTS-038 chr6 35053671 35054054 384 * ANKS1A NA 0 NA 1.366 1 NA NA NA NA NA LTS-038 chr6 35054055 35745704 691650 * c(MIR5690, FANCE, ARMC12, SCUBE3, FKBP5, ANKS1A, LOC285847, CLPSL2, RPL10A, DEF6, PPARD, TCP11, TEAD3, TULP1, ZNF76) 0.401660458531147 10 0.117885820464832 1.45623460406267 1055 0.487311119642448 5 3 2 -6.74808873425371 LTS-038 chr6 35745705 35747108 1404 * CLPSL2 NA 0 NA 0.947 1 NA NA NA NA NA LTS-038 chr6 35747109 35765131 18023 * c(CLPS, CLPSL1, CLPSL2) NA 0 NA 0.789525140534791 49 0.227103758989011 2 NA NA -5.76443825498003 LTS-038 chr6 35765132 35773087 7956 * LHFPL5 NA 0 NA 1.235 1 NA NA NA NA NA LTS-038 chr6 35773088 36343789 570702 * c(SLC26A8, MAPK14, LHFPL5, BRPF3, PNPLA1, C6orf222, ETV7, MAPK13, SRPK1) 0.377300093940138 4 0.0413067791046458 1.37522107187578 848 0.496938160781093 3 2 1 -6.83379828667055 LTS-038 chr6 36343790 36353257 9468 * ETV7 NA 0 NA 1.162 1 NA NA NA NA NA LTS-038 chr6 36353258 36564531 211274 * c(STK38, KCTD20, PXT1, ETV7, SRSF3) 0.462 1 NA 1.0978069643265 258 0.306105569982089 3 3 0 -5.76705437766886 LTS-038 chr6 36564532 36564628 97 * SRSF3 NA 0 NA 1.416 1 NA NA NA NA NA LTS-038 chr6 36564629 36979583 414955 * c(MIR3925, CDKN1A, FGD2, PI16, C6orf89, MTCH1, RAB44, PPIL1, CPNE5, SRSF3) 0.362835163664823 14 0.0441744792316176 1.50340578141359 648 0.436741313835604 6 4 2 -6.77832623841873 LTS-038 chr6 36979584 37140899 161316 * c(FGD2, PIM1) 0.478 1 NA 1.58661932415792 151 0.754099199475113 5 5 0 -5.76448580840161 LTS-038 chr6 37140900 38520624 1379725 * c(MIR4462, BTBD9, CCDC167, TMEM217, CMTR1, MDGA1, PIM1, TBC1D22B, ZFAND3, RNF8) 0.402139772038134 21 0.0478060067953211 1.51080623520787 1080 0.492543749879571 5 3 2 -6.77929560387644 LTS-038 chr6 38520625 38545302 24678 * BTBD9 NA 0 NA 1.057 1 NA NA NA NA NA LTS-038 chr6 38545303 39311693 766391 * c(LOC100131047, BTBD9, DNAH8, KIF6, GLO1, GLP1R, SAYSD1, KCNK16, KCNK5, KCNK17) 0.431780905535055 34 0.0860807408157826 1.17822930947109 1037 0.417721857639059 4 2 2 -6.77306533605603 LTS-038 chr6 39311694 39313476 1783 * KIF6 NA 0 NA 1.788 1 NA NA NA NA NA LTS-038 chr6 39313477 43582703 4269227 * c(TOMM6, MIR4641, DNPH1, CNPY3, FRS3, SLC22A7, APOBEC2, FOXP4, KLHDC3, TAF8, PTCRA, LRRC73, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, CUL9, UBR2, DAAM2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, TREML4, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, TREML1, TREML3P, LINC00951, CRIP3, MDFI, MEA1, MOCS1, C6orf226, ATP6V0CP3, NFYA, MRPL2, PEX6, PGC, TREM2, TREM1, POLH, MRPS10, PPP2R5D, TRERF1, LRFN2, XPO5, PTK7, NA NA NA NA NA NA NA NA NA LTS-038 PRPH2, C6orf132, DLK2, SRF, TBCC, BYSL, TDRG1, TFEB, TREML2, TTBK1, RRP36, CCND3, ABCC10, KLC4, TJAP1, NCR2, MED20, POLR1C, CUL7) 0.441255696232071 134 0.086525501348278 1.32186953844201 5785 0.417018576827118 4 2 2 -6.73749517818626 LTS-038 NA NA NA NA LTS-038 chr6 43582704 43583280 577 * POLH NA 0 NA 3.493 1 NA NA NA NA NA LTS-038 chr6 43583281 44108917 525637 * c(LINC01512, C6orf223, RSPH9, POLH, GTPBP2, MRPS18A, TMEM63B, MRPL14, VEGFA, MAD2L1BP) 0.436427310261766 6 0.0432192086924321 1.62307871188149 471 0.497602898762685 6 3 3 -6.77032030676976 LTS-038 chr6 44108918 44114492 5575 * TMEM63B NA 0 NA 1.16 1 NA NA NA NA NA LTS-038 chr6 44114493 47199349 3084857 * c(ANKRD66, MIR4647, MIR4642, RCAN2, CAPN11, TCTE1, SLC29A1, ADGRF5, TDRD6, SPATS1, ENPP4, ADGRF1, TNFRSF21, HSP90AB1, SLC35B2, MEP1A, TMEM151B, NFKBIE, CYP39A1, CLIC5, TMEM63B, AARS2, ENPP5, MIR586, PLA2G7, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.456390782528644 70 0.0647606598498054 1.36297771013296 2391 0.455408013977723 4 2 2 -6.7705731120422 LTS-038 chr6 47199350 47199458 109 * TNFRSF21 NA 0 NA 1.764 1 NA NA NA NA NA LTS-038 chr6 47199459 47641229 441771 * c(ADGRF2, CD2AP, TNFRSF21) 0.468888467292325 4 0.0184096894777361 1.64734020005567 248 0.535840619861505 6 3 3 -7.61825365908236 LTS-038 chr6 47641230 53788931 6147702 * c(MIR5685, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, GSTA5, OPN5, ADGRF4, ADGRF2, ICK, DEFB110, DEFB112, DEFB113, DEFB114, FBXO9, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, IL17A, GLYATL3, TRAM2-AS1, KLHL31, MIR206, MCM3, PTCHD4, MIR133B, MUT, PGK2, PKHD1, CENPQ, LRRC1, RHAG, ELOVL5, RPS16P5, TFAP2B, CRISP2, LOC730101, GSTA7P, TFAP2D, GCM1, PAQR8, TRAM2) 0.44762259577573 49 0.0733153135714609 1.24359106201192 3028 0.457098813410027 4 2 2 -6.77072156450715 LTS-038 chr6 53788932 53794702 5771 * character(0) NA 0 NA 0.869 1 NA NA NA NA NA LTS-038 chr6 53794703 55216005 1421303 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, MLIP) 0.347166961179274 8 0.0498139395292981 0.972388813976562 436 0.320687471128801 3 2 1 -7.02457142057742 LTS-038 chr6 55216006 55266625 50620 * GFRAL 0.441 1 NA 1.09710653566393 23 0.477151586357665 3 3 0 -5.7646634993066 LTS-038 chr6 55266626 55618836 352211 * c(GFRAL, HMGCLL1) 0.369605808395295 10 0.0690250357157137 1.13931121940345 164 0.34111607508242 3 2 1 -6.75731528881145 LTS-038 chr6 55618837 56968308 1349472 * c(BEND6, ZNF451, KIAA1586, BMP5, DST, COL21A1) 0.455554687242706 30 0.0375705313721567 0.767119106025945 1336 0.217096060068976 2 1 1 -6.80883213481268 LTS-038 chr6 56968309 57244672 276364 * c(ZNF451, RAB23, PRIM2, BAG2) 0.288 1 NA 0.785346430481864 377 0.273242704304663 2 2 0 -5.76504349133442 LTS-038 chr6 57244673 57512678 268006 * PRIM2 0.349235835688332 49 0.0476826331424908 0.989519473885287 115 0.472576617593981 3 2 1 -6.96801485449688 LTS-038 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.714891961610021 19 0.201304735391963 2 NA NA -5.92961023444654 LTS-038 chr6 62390154 63922023 1531870 * KHDRBS2 0.428 1 NA 0.68414910549947 95 0.280207402789126 2 2 0 -6.0326972814144 LTS-038 chr6 63922024 73904800 9982777 * c(MIR4282, KCNQ5-AS1, COL9A1, COL19A1, B3GAT2, SDHAF4, RIMS1, PHF3, EYS, MIR30A, MIR30C2, LOC441155, SLC25A51P1, LGSN, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472) 0.43497940503889 52 0.0612209484154475 0.763687139772609 2559 0.305564173548139 2 1 1 -6.8750895971995 LTS-038 chr6 73904801 74214299 309499 * c(KHDC1L, MB21D1, KHDC3L, MTO1, DPPA5, NA, OOEP, DDX43, KCNQ5, KHDC1) 0.456186555877774 10 0.0480463896204029 0.619331479663946 493 0.191351651290903 2 1 1 -7.0774196047325 LTS-038 chr6 74214300 74214574 275 * character(0) NA 0 NA 1.087 1 NA NA NA NA NA LTS-038 chr6 74214575 83876578 9662004 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, CD109, LCA5, EEF1A1, DOPEY1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, MYO6, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.448517043329726 48 0.0321412000023125 0.862866617064491 3340 0.331639322994656 2 1 1 -7.03975138278883 LTS-038 chr6 83876579 90437741 6561163 * c(SYNCRIP, SLC35A1, CGA, PNRC1, MRAP2, RWDD2A, CNR1, RIPPLY2, PM20D2, SRSF12, CFAP206, PRSS35, C6orf163, CEP162, ANKRD6, DOPEY1, ZNF292, MDN1, ORC3, GABRR1, GABRR2, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, UBE2J1, PGM3, AKIRIN2, RARS2, SMIM8, LYRM2, SNX14, RRAGD, LINC01590, SNORD50B, SPACA1, RNGTT, TBX18, SNAP91) 0.447448019579432 82 0.0616584273897108 0.765098950953761 3825 0.274397401570366 2 1 1 -6.82924281127044 LTS-038 chr6 90437742 90438661 920 * MDN1 NA 0 NA 0.606 1 NA NA NA NA NA LTS-038 chr6 90438662 90660428 221767 * c(MDN1, BACH2, GJA10, CASP8AP2) 0.449567810961065 12 0.0452015687579736 0.667590696847177 544 0.19732758079265 2 1 1 -6.84737928342557 LTS-038 chr6 90660429 91225361 564933 * c(MIR4464, BACH2, MAP3K7) 0.440268699414878 3 0.0158219257150744 0.813991844208108 83 0.17130160388789 2 1 1 -6.78799030780208 LTS-038 chr6 91225362 91256928 31567 * MAP3K7 0.394 1 NA 0.856338745447515 41 0.172121047167535 2 2 0 -5.76751011092836 LTS-038 chr6 91256929 96057291 4800363 * c(MIR4643, EPHA7, TSG1, MAP3K7, MANEA) 0.414102626270141 18 0.0817054529743984 0.868133454421806 387 0.298896286559889 2 1 1 -7.03296847840027 LTS-038 chr6 96650976 96653455 2480 * FUT9 NA 0 NA 0.56179389483591 53 0.072850284871135 1 NA NA -5.76460632647832 LTS-038 chr6 96653456 96969653 316198 * FUT9 NA 0 NA 1.282 1 NA NA NA NA NA LTS-038 chr6 96969654 97002841 33188 * UFL1 NA 0 NA 1.10050992315071 118 0.389365981184888 3 NA NA -5.76469630865938 LTS-038 chr6 97002842 97588470 585629 * c(KLHL32, UFL1, NDUFAF4, GPR63, FHL5) 0.470451723725102 2 0.0282842712474619 0.676921726836263 240 0.277627048046177 2 1 1 -7.30911891450061 LTS-038 chr6 97588471 106556192 8967722 * c(LIN28B-AS1, TSTD3, MIR2113, ASCC3, BVES, KLHL32, BVES-AS1, MMS22L, PNISR, FBXL4, GRIK2, LIN28B, COQ3, POU3F2, PREP, HACE1, PRDM13, PRDM1, POPDC3, SIM1, MCHR2-AS1, MCHR2, FAXC, USP45, CCNC) 0.405300209477099 34 0.113211930362796 0.909178721197168 2424 0.321919703524199 2 1 1 -7.57031272264996 LTS-038 chr6 106556193 106556197 5 * PRDM1 NA 0 NA 1.004 1 NA NA NA NA NA LTS-038 chr6 106556198 109849615 3293418 * c(LOC100422737, LOC100996634, SEC63, AIM1, CCDC162P, AK9, FOXO3, LACE1, SCML4, SESN1, CEP57L1, PPIL6, OSTM1, LINC00222, C6orf203, SOBP, QRSL1, PDSS2, BEND3, PRDM1, MICAL1, SMPD2, NR2E1, ARMC2, RTN4IP1, SNX3, CD164, ATG5, ZBTB24) 0.369464716646149 49 0.0723076559490317 1.01126975912309 2631 0.349923791751642 3 2 1 -6.76763551742765 LTS-038 chr6 109849616 109849742 127 * AK9 NA 0 NA 0.644 1 NA NA NA NA NA LTS-038 chr6 109849743 125406008 15556266 * c(TRAPPC3L, LOC100287632, TRDN, TRAF3IP2, SMPDL3A, GTF3C6, NUS1, SLC16A10, COL10A1, CLVS2, RNF217, NKAIN2, FABP7, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, CDK19, TSPYL4, BRD7P3, FRK, VGLL2, FYN, FAM26E, MCM9, ASF1A, AMD1, GJA1, GPR6, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, HSF2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, NA NA NA NA NA NA NA NA NA LTS-038 TUBE1, CDC40, RWDD1, PLN, PKIB, GOPC, SERINC1, REV3L, ROS1, FAM229B, TRAF3IP2-AS1, MIR548B, TSPYL1, TPI1P3, METTL24, RNF217-AS1, FAM184A, RPF2, DDO, SLC22A16, WISP3, WASF1, MFSD4B, FIG4) 0.402801841006724 135 0.0766450398510926 0.878830645648517 6813 0.351926280226555 2 1 1 -7.52852700055202 LTS-038 NA NA NA NA LTS-038 chr6 125406009 127647717 2241709 * c(MIR5695, NCOA7, HINT3, HEY2, CENPW, HDDC2, ECHDC1, TRMT11, LOC643623, TPD52L1, RNF146, RSPO3) 0.426159310799026 15 0.040399552095584 0.995306284851251 903 0.437907821864251 2 1 1 -7.1810587336445 LTS-038 chr6 127647718 127648123 406 * ECHDC1 NA 0 NA 0.654 1 NA NA NA NA NA LTS-038 chr6 127648124 133108665 5460542 * c(SMLR1, LINC01013, TMEM200A, SLC18B1, TAAR1, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, TAAR6, C6orf58, ARG1, SOGA3, THEMIS, LAMA2, ENPP1, ENPP3, VNN3, ECHDC1, PTPRK, CTAGE9, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7, KIAA0408) 0.397529956472979 50 0.0532027350839049 0.816365884997475 3003 0.294226496609708 2 1 1 -7.19243331559284 LTS-038 chr6 133108666 133110846 2181 * SLC18B1 NA 0 NA 0.912 1 NA NA NA NA NA LTS-038 chr6 133110847 139500135 6389289 * c(LOC100130476, LINC00271, NHEG1, MIR3145, MIR3662, GVQW2, HBS1L, MTFR2, IL22RA2, SLC18B1, LINC01312, SLC2A12, LINC01010, OLIG3, EYA4, HEBP2, CCDC28A, PDE7B, LINC00326, SLC35D3, IFNGR1, ECT2L, HMGA1P7, MAP3K5, FLJ46906, MYB, HECA, PEX7, IL20RA, AHI1, ARFGEF3, NHSL1, ABRACL, PBOV1, SNORA33, RPS12, PERP, SGK1, ALDH8A1, TCF21, TNFAIP3, REPS1, MAP7, TBPL1, BCLAF1) 0.381860847951779 60 0.0919715996449064 0.946786332002196 3680 0.393473845461015 3 2 1 -6.98889875426841 LTS-038 chr6 139500136 142455130 2954995 * c(LOC100132735, MIR3668, MIR4465, CITED2, TXLNB, NMBR, HECA, LINC01625) 0.15 1 NA 0.987420983316008 249 0.363419802447865 3 3 0 -5.81517113373726 LTS-038 chr6 142455131 142731192 276062 * c(VTA1, ADGRG6) 0.174815047570964 3 0.0729817328742839 0.928667685276318 224 0.286924121735291 2 2 0 -6.7900846842244 LTS-038 chr6 142731193 142732389 1197 * ADGRG6 NA 0 NA 0.662 1 NA NA NA NA NA LTS-038 chr6 142732390 149285664 6553275 * c(UST-AS1, LINC01277, LOC100507557, UST, RAB32, ADAT2, STXBP5, LOC153910, ZC2HC1B, SASH1, FUCA2, SHPRH, PHACTR2-AS1, GRM1, HIVEP2, SAMD5, AIG1, PLAGL1, HYMAI, ADGRG6, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, SF3B5, FBXO30, LTV1, PEX3, STX11, PHACTR2) 0.18079808226641 35 0.0434145543500307 0.834726015157362 2888 0.303322760634131 2 2 0 -6.82061909528328 LTS-038 chr6 149285665 149340207 54543 * c(UST-AS1, UST) NA 0 NA 0.623 1 NA NA NA NA NA LTS-038 chr6 149340208 150386814 1046607 * c(RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, RAET1L, TAB2, ZC3H12D, NUP43, RAET1G, SUMO4, PCMT1, RPS18P9, RAET1K, ULBP3, ULBP2, ULBP1, LRP11, PPIL4, LATS1) 0.157474892908196 33 0.0361061671052232 0.75397177239354 1089 0.287371224885297 2 2 0 -7.0882900056627 LTS-038 chr6 150386815 150387081 267 * ULBP3 NA 0 NA 1.207 1 NA NA NA NA NA LTS-038 chr6 150387082 150726042 338961 * c(IYD, ULBP3, PPP1R14C) 0.122143222914125 3 0.035028559776274 0.937131378827429 261 0.334664227695679 3 3 0 -6.92027911783089 LTS-038 chr6 150726043 150726097 55 * character(0) 0.115 1 NA 0.952211038807944 3 0.51998493567923 3 3 0 -5.76441128697278 LTS-038 chr6 150726098 152646486 1920389 * c(ESR1, SYNE1, MTHFD1L, RMND1, PLEKHG1, ZBTB2, ARMT1, CCDC170, AKAP12) 0.15720485630682 35 0.0576277535844777 0.896500323242526 1502 0.347912557732848 2 2 0 -6.99389383212309 LTS-038 chr6 152646487 155579183 2932697 * c(CNKSR3, SCAF8, SYNE1, IPCEF1, TIAM2, FBXO5, RGS17, OPRM1, TFB1M, MTRF1L, VIP, MYCT1) 0.160587723275038 35 0.0403871599530795 0.827575284514676 1627 0.333558406054621 2 2 0 -6.96461686795937 LTS-038 chr6 155579184 155579246 63 * TFB1M 0.146 1 NA 1.2 1 NA NA NA NA NA LTS-038 chr6 155579247 158095009 2515763 * c(MIR3692, MIR4466, CLDN20, NOX3, TFB1M, ARID1B, TMEM242, ZDHHC14) 0.138074509735584 15 0.0903466867656131 1.057022029062 557 0.337016044572611 3 3 0 -6.73407184738071 LTS-038 chr6 158095010 163736204 5641195 * c(LOC100129518, C6orf99, AIRN, MIR3918, SYNJ2-IT1, EZR-AS1, TAGAP, PACRG, PNLDC1, OSTCP1, PACRG-AS1, MRPL18, IGF2R, ACAT2, LPA, GTF2H5, MAS1, MAP3K4, PARK2, SNX9, PLG, AGPAT4, TULP4, TMEM181, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, TCP1, DYNLT1, LOC729603, EZR, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3, WTAP) 0.169781481661574 62 0.0538968892375714 0.861356443700012 3635 0.335575849565106 2 2 0 -6.94714440869515 LTS-038 chr6 163736205 163736502 298 * c(PACRG, PACRG-AS1) 0.259 1 NA 0.581623848517905 7 0.255544982528004 1 1 0 -5.76442033764792 LTS-038 chr6 163736503 167591954 3855452 * c(LOC100289495, MIR1913, MIR3939, CAHM, RPS6KA2-IT1, PDE10A, FGFR1OP, SFT2D1, CCR6, PACRG, C6orf118, GPR31, PACRG-AS1, PRR18, DKFZp451B082, TCP10L2, LINC00602, MPC1, RPS6KA2, T, RNASET2, LINC00473, QKI) 0.165561314885712 54 0.0754067377667867 0.908443601084161 1524 0.423136670270936 2 2 0 -6.97945368033705 LTS-038 chr6 167591955 167592007 53 * TCP10L2 NA 0 NA 0.714 1 NA NA NA NA NA LTS-038 chr6 167592008 167787910 195903 * c(TCP10L2, UNC93A, TCP10, TTLL2) 0.21689207583628 8 0.151613936411814 0.730689133061002 343 0.542453322708612 2 2 0 -6.76261019648309 LTS-038 chr6 167787911 167787957 47 * TCP10 NA 0 NA 0.915 1 NA NA NA NA NA LTS-038 chr6 167787958 167789279 1322 * TCP10 NA 0 NA 0.181579307502161 40 0.160368563883485 0 NA NA -5.77171254947031 LTS-038 chr6 167789280 170598352 2809073 * c(HGC6.3, LOC154449, DACT2, WDR27, LINC01558, DLL1, KIF25, C6orf120, LINC00242, AFDN, PHF10, ERMARD, SMOC2, AFDN-AS1, TCP10, TCTE3, THBS2, FRMD1, LINC00574) 0.143062726865076 51 0.0627395800269717 0.992891087383289 1529 0.346330057689572 3 3 0 -6.77798626549901 LTS-038 chr6 170598353 170893599 295247 * c(MIR4644, DLL1, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.868023602894159 317 0.902560913496467 2 NA NA -5.76591529069036 LTS-038 chr7 193047 195605 2559 * FAM20C 0.48 1 NA 0.721486463195846 19 0.259580836207752 2 2 0 -5.76464570801525 LTS-038 chr7 195606 1627043 1431438 * c(WI2-2373I1.2, ADAP1, PSMG3-AS1, GPR146, TMEM184A, SUN1, INTS1, GPER1, UNCX, HRAT92, LOC442497, MIR339, PDGFA, GET4, CYP2W1, DNAAF5, PRKAR1B, FAM20C, MAFK, MICALL2, PSMG3, C7orf50, ZFAND2A, COX19) 0.441673041595324 80 0.0804958515717 0.877428918714037 1753 0.290623360192222 2 1 1 -6.82248877720754 LTS-038 chr7 1627044 5925699 4298656 * c(RBAK-RBAKDN, MIR4648, MIR4655, MIR4656, RNF216-IT1, PSMG3-AS1, AMZ1, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, TFAMP1, WIPI2, GNA12, SNX8, MRM2, RBAKDN, ELFN1, LFNG, ZNF815P, RNF216P1, NUDT1, RNF216, CHST12, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TTYH3, MAD1L1, CARD11, TNRC18, EIF3B, AP5Z1) 0.444027167617714 92 0.0623648352102966 0.796378536569809 3670 0.287871685027252 2 1 1 -6.73341408234906 LTS-038 chr7 5925700 5925706 7 * OCM NA 0 NA 0.384 1 NA NA NA NA NA LTS-038 chr7 5925707 6026583 100877 * c(RSPH10B, CCZ1, PMS2, OCM) 0.357503155559259 6 0.0621117272877406 0.467859389431978 158 0.334213211427338 3 2 1 -7.14228596295403 LTS-038 chr7 6026584 6786822 760239 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.452057008144698 41 0.041256174704152 0.74994065625528 1296 0.275621316536252 2 1 1 -6.7748191158306 LTS-038 chr7 6786823 6790903 4081 * PMS2CL NA 0 NA 0.079 1 NA NA NA NA NA LTS-038 chr7 6790904 6844680 53777 * c(CCZ1B, PMS2CL, RSPH10B2) NA 0 NA 0.367836289010841 82 0.196722661711441 0 NA NA -5.80408879166061 LTS-038 chr7 6844681 7561665 716985 * c(LOC100131257, CCZ1B, COL28A1, C1GALT1) 0.428809747399263 12 0.053038793692576 0.795785672466795 313 0.306546306009961 2 1 1 -6.78776182614116 LTS-038 chr7 7561666 7563816 2151 * COL28A1 NA 0 NA 0.643 1 NA NA NA NA NA LTS-038 chr7 7563817 8196495 632679 * c(GLCCI1, ICA1, COL28A1, MIOS, RPA3, UMAD1) 0.229254510158167 6 0.0608848640194479 0.569154822585309 356 0.193117618049242 1 1 0 -7.00713461855725 LTS-038 chr7 8196496 8196529 34 * ICA1 0.478 1 NA 1.023 1 NA NA NA NA NA LTS-038 chr7 8196530 16918304 8721775 * c(ISPD-AS1, LRRC72, ARL4A, AGR2, AGR3, DGKB, PER4, ETV1, VWDE, THSD7A, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, AGMO, MEOX2, NDUFA4, TMEM106B, ANKMY2, ISPD, SCIN, PHF14) 0.451458094072487 67 0.0428071681016915 0.823148179471117 2075 0.27732946077543 2 1 1 -6.80822230649283 LTS-038 chr7 16918305 16921546 3242 * AGR3 NA 0 NA 0.923 1 NA NA NA NA NA LTS-038 chr7 16921547 20450432 3528886 * c(MIR3146, MACC1-AS1, AGR3, AHR, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, MACC1, ITGB8, TWIST1, HDAC9) 0.457505585066841 16 0.0368725281657406 0.919951225294252 1161 0.346235043480991 2 1 1 -7.13586466506723 LTS-038 chr7 20450433 20662802 212370 * c(ABCB5, ITGB8) NA 0 NA 0.634 1 NA NA NA NA NA LTS-038 chr7 20662803 26235413 5572611 * c(LOC100506178, KLHL7-AS1, RNU6-16P, GPNMB, IGF2BP3, NUPL2, MALSU1, CLK2P1, C7orf31, DFNA5, SP8, RPL23P8, STEAP1B, RPS2P32, OSBPL3, TRA2A, HNRNPA2B1, ABCB5, FAM221A, IL6, MIR148A, NPY, MPP6, CYCS, TOMM7, CDCA7L, KLHL7, STK31, NPVF, SP4, SNORD93, FAM126A, DNAH11, CCDC126, NFE2L3, RAPGEF5) 0.43216892745677 64 0.116114209606831 0.772421183713552 2944 0.312456509784718 2 1 1 -6.77837794418577 LTS-038 chr7 26235414 26396777 161364 * c(CBX3, SNX10, HNRNPA2B1) 0.336 1 NA 0.753181512716837 99 0.386104194726935 2 2 0 -5.76664762079032 LTS-038 chr7 26396778 26396849 72 * SNX10 NA 0 NA 0.453762530832025 3 0.175514481833646 1 NA NA -5.76445854516187 LTS-038 chr7 26396850 26400515 3666 * SNX10 NA 0 NA 1.251 1 NA NA NA NA NA LTS-038 chr7 26400516 30174773 3774258 * c(JAZF1-AS1, HOXA-AS3, HOTTIP, HOTAIRM1, LOC100506497, HOXA10-HOXA9, MIR550A3, HOXA10-AS, HIBADH, CHN2, EVX1, HOXA11-AS, JAZF1, MTURN, PRR15, C7orf71, SNX10, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, LOC441204, DPY19L2P3, MIR196B, CPVL, FKBP14, WIPF3, LOC646762, PLEKHA8, TAX1BP1, SKAP2, CREB5, SCRN1, KIAA0087, TRIL) 0.344367888939709 62 0.0546490364661054 1.21313011126366 2425 0.417036194831656 4 3 1 -7.06922153525758 LTS-038 chr7 30174774 30177035 2262 * MTURN 0.421 1 NA 1.2848486781787 7 0.142086157631474 4 4 0 -5.76442183729824 LTS-038 chr7 30177036 30201130 24095 * MTURN 0.452866580732408 3 0.0391535439009037 1.14569801977393 107 0.315333636950033 4 2 2 -6.76018527522985 LTS-038 chr7 30201131 36493328 6292198 * c(DPY19L1P1, LOC100130673, MIR550B2, MIR550B1, INMT-FAM188B, NOD1, PPP1R17, INMT, FKBP9, ADCYAP1R1, CRHR2, BMPER, DKFZP586I1420, MTURN, CCDC129, ZNRF2, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, GARS, GHRHR, BBS9, AQP1, NPSR1, LOC401320, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, ANLN, DPY19L2P1, TBX20, RP9, NEUROD6, HERPUD2, MIR550A1, MIR550A2, GGCT, EEPD1, FAM188B, SEPT7) 0.446941184859193 83 0.0350396358418502 1.41412781416986 3435 0.481696731293237 4 2 2 -6.84428057328217 LTS-038 chr7 36493329 36552590 59262 * c(AOAH, ANLN) NA 0 NA 0.795 1 NA NA NA NA NA LTS-038 chr7 36552591 36894654 342064 * c(AOAH-IT1, AOAH, ELMO1) 0.4489134866351 3 0.0430348695827 1.01700156147147 155 0.282973178245219 2 1 1 -6.8842620984856 LTS-038 chr7 36894655 37250727 356073 * c(MIR1200, ELMO1) 0.376 1 NA 1.00644332810675 81 0.256702400711143 3 3 0 -5.77030783690277 LTS-038 chr7 37250728 45145680 7894953 * c(MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, YKT6, POU6F2, MPLKIP, AEBP1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, FAM183BP, LINC00265, GPR141, INHBA, RASA4CP, TARP, OGDH, NME8, UBE2D4, PGAM2, POLD2, DDX56, EPDR1, PPIA, URGCP, COA1, PSMA2, YAE1D1, PURB, MYL7, RALA, MYO1G, SFRP4, BLVRA, LOC646999, MRPS24, NA NA NA NA NA NA NA NA NA LTS-038 MRPL32, SNORA5B, SNORA5C, SNORA9, C7orf25, SUGCT, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, CDK13, TBRG4, STK17A, H2AFV, ELMO1) 0.355015538638622 39 0.0956978629419692 1.03181158555201 4942 0.51280201521579 3 2 1 -6.77773117542318 LTS-038 NA NA NA NA LTS-038 chr7 45145681 45762699 617019 * c(RAMP3, ADCY1, SNORA5B, TBRG4) NA 0 NA 0.86906604799034 370 0.202611783788732 2 NA NA -5.82798098600904 LTS-038 chr7 45762700 48259048 2496349 * c(ADCY1, C7orf57, ABCA13, PKD1L1, SUN3, HUS1, IGFBP1, IGFBP3, C7orf65, SEPT7P2, TNS3, UPP1, C7orf69, LINC00525) 0.361224392907471 29 0.0606634298744963 1.1078238153553 1121 0.372230715236005 3 2 1 -6.81754020206572 LTS-038 chr7 48259049 57245247 8986199 * c(DDC-AS1, LOC100130849, C7orf72, EGFR-AS1, IKZF1, ZPBP, ABCA13, DDC, CDC14C, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, SEPT14, ZNF713, FKBP9P1, VWC2, NUPR2, LINC01446, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, FIGNL1, GUSBP10, LOC650226, SNORA15, VOPP1, CCT6A, ZNF479) 0.364235877147531 54 0.101786709553797 0.928209126676177 2914 0.352791127229551 3 2 1 -7.34445366774098 LTS-038 chr7 57245248 57533225 287978 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 0.958295139925168 93 0.469325881781474 3 NA NA -5.77099828681955 LTS-038 chr7 62758725 63023528 264804 * ZNF733P 0.466 1 NA 1.03397322500692 7 0.676675662619066 3 3 0 -5.76449550444767 LTS-038 chr7 63023529 64539088 1515560 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.380993856263121 17 0.104309705712759 0.9927828118346 608 0.327412141094571 3 2 1 -6.75995672224724 LTS-038 chr7 64539089 64639758 100670 * character(0) NA 0 NA 0.664 1 NA NA NA NA NA LTS-038 chr7 64639759 65157832 518074 * c(ZNF92, LOC441242, INTS4P2) NA 0 NA 0.611659547144554 99 0.16460976385319 1 NA NA -5.90374212133746 LTS-038 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.899 1 NA NA NA NA NA LTS-038 chr7 65159973 66474636 1314664 * c(VKORC1L1, KCTD7, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, TMEM248, TYW1, CCT6P1, INTS4P2, SNORA22, GTF2IRD1P1, TPST1) 0.375521693541956 20 0.0586973504288602 0.987262266639705 773 0.514223009009573 3 2 1 -6.74719457192549 LTS-038 chr7 66474637 66786524 311888 * c(MIR4650-2, PMS2P4, TYW1, STAG3L4) 0.404422249386204 18 0.073479266561249 0.755033458312945 169 0.301196620730131 2 1 1 -6.91625549411144 LTS-038 chr7 69063868 70256025 1192158 * AUTS2 0.378300850420589 3 0.0494267134250296 1.28443783959324 167 0.464138391932089 3 2 1 -6.86490579787002 LTS-038 chr7 70256026 72850437 2594412 * c(MIR3914-1, MIR3914-2, MIR4650-1, TRIM50, SBDSP1, NSUN5P2, AUTS2, GTF2IRD2P1, TYW1B, SPDYE7P, STAG3L3, LOC541473, NSUN5, WBSCR17, NCF1B, FZD9, CALN1, FKBP6, POM121) 0.342424554725029 16 0.103512297981126 0.899477431255631 893 0.445595695614991 3 2 1 -6.99177985456184 LTS-038 chr7 72850438 72855930 5493 * c(FZD9, BAZ1B) NA 0 NA 1.143 1 NA NA NA NA NA LTS-038 chr7 72855931 74210670 1354740 * c(MIR4284, WBSCR22, WBSCR28, CLDN4, CLDN3, WBSCR27, VPS37D, ABHD11-AS1, ELN, TBL2, GTF2I, LIMK1, MLXIPL, RFC2, NCF1, STX1A, MIR590, EIF4H, CLIP2, LAT2, ABHD11, GTF2IRD2, DNAJC30, BAZ1B, BCL7B, GTF2IRD1) 0.38300990485459 25 0.0439127923654752 1.02451516534511 1674 0.335414213553725 3 2 1 -6.74133316804262 LTS-038 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.818 1 NA NA NA NA NA LTS-038 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.345729511499547 5 0.0523211238411409 0.766164856747408 214 0.325043418659516 3 2 1 -7.41239615864718 LTS-038 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.316 1 NA NA NA NA NA LTS-038 chr7 75048588 77469643 2421056 * c(POM121C, PMS2P9, LOC100133091, APTR, MIR4651, CCL26, FGL2, DTX2, SSC4D, SRRM3, RSBN1L, POMZP3, HIP1, HSPB1, MDH2, DTX2P1-UPK3BP1-PMS2P11, SPDYE5, STYXL1, PMS2P3, GSAP, POR, PHTF2, RHBDD2, CCDC146, PTPN12, FDPSP2, CCL24, SNORA14A, YWHAG, ZP3, UPK3B, TMEM120A, TMEM60) 0.371947637476386 52 0.079175445254332 1.01737249470415 1857 0.382195304344865 3 2 1 -6.74856482592348 LTS-038 chr7 77469644 77483938 14295 * PHTF2 NA 0 NA 1.339 1 NA NA NA NA NA LTS-038 chr7 77483939 86986804 9502866 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, TP53TG1, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, CROT, PHTF2, CACNA2D1, TMEM243, CD36, SEMA3E, MAGI2, DMTF1) 0.377428664471031 37 0.0508993294822411 1.1277893749222 2665 0.392790304026098 3 2 1 -6.9155764422165 LTS-038 chr7 86986805 89856674 2869870 * c(DBF4, RUNDC3B, C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, ABCB1, ABCB4, ADAM22, CROT, SLC25A40, SRI, STEAP4) 0.388450290697522 20 0.0989913738931992 0.963355287572521 1614 0.385973562066677 3 2 1 -6.82305211514585 LTS-038 chr7 89856675 91501533 1644859 * c(LOC101409256, STEAP2, CDK14, MTERF1, CFAP69, FZD1, GTPBP10, CLDN12) 0.35615884673026 13 0.119315300886521 1.21396320698969 721 1.07294516526524 3 2 1 -6.77381919953325 LTS-038 chr7 91501534 91501536 3 * MTERF1 NA 0 NA 0.949 1 NA NA NA NA NA LTS-038 chr7 91501537 93539095 2037559 * c(MIR4652, AKAP9, CDK6, CYP51A1, SAMD9L, HEPACAM2, FAM133B, GNGT1, LRRD1, PEX1, ANKIB1, SAMD9, VPS50, MIR489, GATAD1, MIR653, MTERF1, TFPI2, CALCR, RBM48, NA, KRIT1) 0.370092561002105 49 0.0559673282972726 1.00040879188526 2221 0.347488456319446 3 2 1 -6.77382821805734 LTS-038 chr7 93539096 96747252 3208157 * c(LOC100506136, SLC25A13, BET1, COL1A2, DLX5, DLX6, DYNC1I1, PEG10, GNG11, GNGT1, DLX6-AS1, C7orf76, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A, SDHAF3, CASD1, MIR591, SHFM1, SGCE) 0.403435224931797 23 0.061773716861313 1.16376728051398 1818 0.424575442218251 3 2 1 -6.9320843425828 LTS-038 chr7 96747253 96765653 18401 * SDHAF3 NA 0 NA 0.633 1 NA NA NA NA NA LTS-038 chr7 96765654 99056951 2291298 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, BHLHA15, TMEM130, LMTK2, BRI3, TECPR1, PTCD1, MGC72080, KPNA7, ASNS, NPTX2, OCM2, BAIAP2L1, SDHAF3, SMURF1, TAC1, TRRAP, MYH16, BUD31, ATP5J2) 0.377067938405553 29 0.0462663631019319 1.02726889969632 1952 0.334353893273159 3 2 1 -6.74073336686289 LTS-038 chr7 99056952 99675095 618144 * c(GS1-259H13.2, ATP5J2-PTCD1, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, FAM200A, ZKSCAN5, ZNF789, GJC3, AZGP1, AZGP1P1, CYP3A43, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, OR2AE1, ZNF394, TRIM4, ATP5J2) 0.415237050932722 8 0.0644968160897442 0.8782935551831 1345 0.252857834448404 2 1 1 -6.90913928772586 LTS-038 chr7 99675096 100331765 656670 * c(PCOLCE-AS1, SAP25, MIR4658, POP7, STAG3, COPS6, EPO, PPP1R35, GPC2, NYAP1, CNPY4, MBLAC1, FBXO24, GNB2, PILRB, PILRA, AGFG2, GATS, LAMTOR4, C7orf61, LRCH4, MIR106B, MIR25, MIR93, MCM7, SPDYE3, PCOLCE, ACTL6B, PMS2P1, ZCWPW1, C7orf43, MEPCE, MOSPD3, GIGYF1, TAF6, TFR2, ZAN, ZNF3, PVRIG, GAL3ST4, TSC22D4, AP4M1) 0.31453624323276 11 0.106517860218156 1.02392845368063 2215 0.314394991524574 3 2 1 -6.95085937003834 LTS-038 chr7 100331766 100377312 45547 * ZAN 0.414879226515894 2 0.0197989898732233 0.749078637860677 185 0.184862581477573 5 3 2 -7.13097072620727 LTS-038 chr7 100377313 100382306 4994 * ZAN NA 0 NA 0.954 1 NA NA NA NA NA LTS-038 chr7 100382307 100624879 242573 * c(MUC12, EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.36445666121954 139 0.0768270246814588 1.07881133323659 857 1.04780280223237 3 2 1 -6.7560338362588 LTS-038 chr7 100624880 100633823 8944 * MUC12 NA 0 NA 0.603 1 NA NA NA NA NA LTS-038 chr7 100633824 100701761 67938 * c(MUC12, MUC17) 0.383888920443912 14 0.060197887955357 0.776464639003852 356 0.299314954667079 3 2 1 -6.77746015455145 LTS-038 chr7 100701762 100701846 85 * MUC17 0.343 1 NA 1.115 1 NA NA NA NA NA LTS-038 chr7 100701847 102952888 2251042 * c(RPL19P12, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, RASA4, LRRC17, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, FAM185A, FBXL13, NAPEPLD, CLDN15, POLR2J2, MOGAT3, DPY19L2P2, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.385943332904869 71 0.0526887218335262 1.04175987468725 2263 0.350078748518302 3 2 1 -6.74273407028566 LTS-038 chr7 102952889 103292070 339182 * c(DNAJC2, SLC26A5, RELN, PSMC2, PMPCB) 0.404511780188085 5 0.0429103717066166 0.875723415546506 655 0.267112920827245 3 2 1 -7.02311277418517 LTS-038 chr7 103292071 103292112 42 * RELN 0.367 1 NA 1.745 1 NA NA NA NA NA LTS-038 chr7 103292113 116759804 13467692 * c(EFCAB10, KMT2E-AS1, LINC01004, MIR3666, NAMPT, COG5, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, ATXN7L1, CDHR3, TFEC, LAMB4, TES, HBP1, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, ST7-OT4, IFRD1, LHFPL3, LAMB1, LINC00998, DNAJB9, MET, EIF3IP1, NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, PUS7, LRRN3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, RELN, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, NA NA NA NA NA NA NA NA NA LTS-038 ST7, CBLL1, CAPZA2, IMMP2L, CAV1, CAV2, ST7-AS1, ST7-AS2, FOXP2, DOCK4) 0.388528095838913 76 0.0677718916531449 1.01776437245921 5770 0.404879127714619 3 2 1 -6.79213872582925 LTS-038 NA NA NA NA LTS-038 chr7 116759805 116769831 10027 * c(ST7, ST7-AS2) NA 0 NA 1.237 1 NA NA NA NA NA LTS-038 chr7 116769832 120655789 3885958 * c(CFTR, ASZ1, TSPAN12, KCND2, LSM8, ING3, ANKRD7, WNT2, ST7, CPED1, CTTNBP2, ST7-AS2, ST7-OT3) 0.411187426207737 21 0.0429016039216207 1.17231953586975 1180 0.414626666838161 3 2 1 -7.20320639984306 LTS-038 chr7 120655790 122840113 2184324 * c(AASS, FAM3C, FEZF1-AS1, RNF133, RNF148, FEZF1, TAS2R16, WNT16, PTPRZ1, SLC13A1, CPED1, CADPS2) 0.389458459230333 23 0.0990580538054096 0.942664025714406 1198 0.370611388026035 3 2 1 -6.84864929599971 LTS-038 chr7 122840114 123092438 252325 * IQUB NA 0 NA 1.604 1 NA NA NA NA NA LTS-038 chr7 123092439 128128226 5035788 * c(ASB15, IQUB, C7orf77, MGC27345, ZNF800, HYAL4, POT1, HYALP1, SND1, SND1-IT1, GPR37, GRM8, HILPDA, FSCN3, IMPDH1, ARF5, LEP, PRRT4, MIR129-1, LMOD2, NDUFA5, PAX4, RBM28, METTL2B, LRRC4, SPAM1, MIR592, MIR593, TMEM229A, GCC1, WASL) 0.368733108909984 16 0.0472539239993181 1.09635068322487 1913 0.503314396966699 3 2 1 -6.78586843040874 LTS-038 chr7 128128227 128371700 243474 * c(FAM71F2, LINC01000, METTL2B, FAM71F1) 0.418951715255251 4 0.0423753072751888 0.734485828776027 251 0.267846529941296 2 1 1 -6.96413964401373 LTS-038 chr7 128371701 128387592 15892 * c(CALU, FAM71F1) NA 0 NA 2.262 1 NA NA NA NA NA LTS-038 chr7 128387593 141445499 13057907 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, TMEM178B, MIR4468, RNA5SP244, C7orf55-LUC7L2, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, CLEC2L, FMC1, TMEM213, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, MKRN1, UBN2, SLC13A4, COPG2, DENND2A, WEE2-AS1, TPI1P2, FLJ40288, HIPK2, WDR91, MESTIT1, TSPAN33, AGBL3, STRA8, KLRG2, LOC349160, IRF5, KCP, LINC-PINT, FAM180A, NA NA NA NA NA NA NA NA NA LTS-038 RAB19, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MKLN1, AKR1B15, MIR335, NDUFB2, CNOT4, NRF1, WEE2, ATP6V0A4, CPA4, ZC3HC1, LUC7L2, MRPS33, PODXL, CHCHD3, TMEM140, AGK, ZC3HAV1, AKR1B10, KIAA1147, MIR490, STRIP2, PTN, KIAA1549, EXOC4, OPN1SW, NA, C7orf73, CCDC136, PARP12, CREB3L2, SMO, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, UBE2H, LUZP6, C7orf49, TTC26, CALD1, KDM7A, CALU, SLC37A3, SLC35B4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 TMEM209, TRIM24, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, CPA5, CEP41) 0.375510996046912 142 0.0887967952241167 1.05582564120831 9758 0.384672945425337 3 2 1 -6.73568597500654 LTS-038 NA NA NA NA LTS-038 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.685 1 NA NA NA NA NA LTS-038 chr7 141450032 142119828 669797 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, NA, MGAM, MGAM2) 0.365130673308869 27 0.052833097413801 0.848453814131251 1046 0.257323355306225 3 2 1 -7.041543567947 LTS-038 chr7 142119829 142119831 3 * character(0) 0.462 1 NA 1.168 1 NA NA NA NA NA LTS-038 chr7 142119832 142565484 445653 * c(MTRNR2L6, PRSS3P2, EPHB6, PRSS1) 0.315596607050438 39 0.10102080864197 1.1681780754578 461 0.58691430284762 4 3 1 -6.7467563123004 LTS-038 chr7 142565485 142565770 286 * EPHB6 NA 0 NA 0.617 1 NA NA NA NA NA LTS-038 chr7 142565771 142920258 354488 * c(OR9A2, C7orf34, EPHB6, TAS2R39, TAS2R40, OR6V1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.396848653929787 5 0.0396698878243939 0.842878399401378 532 0.201124090205215 3 2 1 -7.08999962085725 LTS-038 chr7 142920259 142960202 39944 * character(0) NA 0 NA 1.239 1 NA NA NA NA NA LTS-038 chr7 142960203 143175599 215397 * c(CLCN1, TMEM139, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, GSTK1, ZYX, CASP2, FAM131B) 0.419490514352788 10 0.0434506105314477 1.07806912283749 688 0.407327066353781 5 3 2 -6.8414275483815 LTS-038 chr7 143175600 143305664 130065 * c(TAS2R41, EPHA1-AS1, CTAGE15) NA 0 NA 0.603203521279637 40 0.398669253539759 1 NA NA -5.76908155892025 LTS-038 chr7 143305665 143321183 15519 * TCAF2 NA 0 NA 0.0360258903823204 39 0.0382907056301111 0 NA NA -12.7827011432809 LTS-038 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 2.337 1 NA NA NA NA NA LTS-038 chr7 143400289 143884193 483905 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.395104478435391 9 0.0506606356059614 0.83434034779961 308 0.469470431362493 3 2 1 -6.85845288157731 LTS-038 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.203 1 NA NA NA NA NA LTS-038 chr7 143928927 143982428 53502 * c(OR2A7, ARHGEF34P) 0.231 1 NA 0.356254930423965 84 0.269053584486996 0 0 0 -5.7798580447904 LTS-038 chr7 143982429 143982436 8 * ARHGEF34P NA 0 NA 0.353 1 NA NA NA NA NA LTS-038 chr7 143982437 144074288 91852 * c(ARHGEF34P, ARHGEF5) 0.418 1 NA 0.55373585856073 69 0.245250950169922 1 1 0 -5.76454231846064 LTS-038 chr7 144074289 149942038 5867750 * c(ZNF783, MIR548I4, MIR548F4, MIR548AQ, NOBOX, ZNF786, ZNF425, LOC155060, ZNF746, ATP6V0E2, ZNF467, C7orf33, EZH2, SSPO, CNTNAP2, TPK1, ZNF777, ATP6V0E2-AS1, ZNF398, ZNF862, ARHGEF5, ZNF212, ZNF767P, ZNF282, CUL1, KRBA1, PDIA4) 0.379245786879885 24 0.0994305161217213 1.01548423637861 2737 0.280589514020077 3 2 1 -6.78347943017767 LTS-038 chr7 149942039 149946176 4138 * ACTR3C NA 0 NA 0.604104770798165 91 0.263830862124816 1 NA NA -5.76476012335728 LTS-038 chr7 149946177 149981784 35608 * ACTR3C NA 0 NA 1.363 1 NA NA NA NA NA LTS-038 chr7 149981785 150095260 113476 * c(RNU6-34P, ZBED6CL, ZNF775, REPIN1, RARRES2, ACTR3C, LRRC61) 0.322680893669936 10 0.067744700489739 1.08588202054409 306 0.32545007535453 4 3 1 -6.78720607311583 LTS-038 chr7 150095261 150642583 547323 * c(GIMAP1-GIMAP5, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, KCNH2, GIMAP6, GIMAP4, GIMAP5, TMEM176A, LOC728743) 0.388180539975221 16 0.0442609214394218 0.894656930063052 597 0.287263736733744 3 2 1 -6.85672213594195 LTS-038 chr7 150642584 152132933 1490350 * c(WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CDK5, FASTK, ABCB8, AGAP3, ASB10, CRYGN, GALNTL5, GBX1, ATG9B, WDR86, KCNH2, NOS3, PRKAG2, NUB1, CHPF2, KMT2C, RHEB, GALNT11, SLC4A2, SMARCD3, MIR671, TMUB1, ASIC3) 0.349058953188412 47 0.0596188867379641 1.12890218836597 2505 0.3503831111206 3 2 1 -6.92316752436327 LTS-038 chr7 152132934 152142260 9327 * c(FABP5P3, KMT2C) NA 0 NA 0.671 1 NA NA NA NA NA LTS-038 chr7 152142261 155493878 3351618 * c(HTR5A-AS1, LINC01003, PAXIP1-AS2, RBM33, DPP6, EN2, PAXIP1-AS1, PAXIP1, CNPY1, HTR5A, INSIG1, ACTR3B, XRCC2) 0.349790458879672 30 0.112485733450447 0.977826259722153 1155 0.388419026107882 3 2 1 -6.84200146389876 LTS-038 chr7 155493879 155493911 33 * RBM33 NA 0 NA 1.815 1 NA NA NA NA NA LTS-038 chr7 155493912 156431052 937141 * c(RBM33, LOC285889, LINC00244, SHH) 0.376577968787143 7 0.0534722892186758 1.22958360456687 415 0.506493492859086 3 2 1 -6.78875729635431 LTS-038 chr7 156431053 156431151 99 * C7orf13 NA 0 NA 1.06979970145977 2 0.334461507501237 3 NA NA -5.76441031216697 LTS-038 chr7 156431152 156432793 1642 * C7orf13 0.463 1 NA 0.933057383285471 33 0.17864717852219 3 3 0 -5.76484246395156 LTS-038 chr7 156432794 158930775 2497982 * c(DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, MNX1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, NOM1, MNX1-AS1, MIR595, VIPR2, UBE3C) 0.457409706505483 59 0.0443682981373252 0.770593634339755 1760 0.550827218993798 2 1 1 -6.78674766308993 LTS-038 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 0.828708260613612 19 0.218000254841849 2 NA NA -5.76604182915848 LTS-038 chr8 182757 197042 14286 * ZNF596 0.211 1 NA 0.704509998724953 61 0.184984014964401 2 2 0 -5.76835323334988 LTS-038 chr8 197043 6372299 6175257 * c(LOC100287015, TDRP, ERICH1, ZNF596, CLN8, FBXO25, ANGPT2, LOC286083, ERICH1-AS1, CSMD1, MIR596, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.199516066847181 79 0.0509446052838769 0.736549625884509 2001 0.257009187350975 2 2 0 -7.12872954537861 LTS-038 chr8 6372300 6377343 5044 * c(ANGPT2, MCPH1) NA 0 NA 1.045 1 NA NA NA NA NA LTS-038 chr8 6377344 6728242 350899 * c(MIR4659A, MIR4659B, GS1-24F4.2, DEFB1, ANGPT2, XKR5, AGPAT5, MCPH1) 0.211167188031009 7 0.069880169542139 0.929492141183722 247 0.368176806248877 2 2 0 -6.85144177993311 LTS-038 chr8 6728243 7320405 592163 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.152867446527726 10 0.0591759147701908 0.513904271191845 95 0.583600450652876 2 2 0 -7.101309299755 LTS-038 chr8 7320406 7332478 12073 * character(0) NA 0 NA 0.023 1 NA NA NA NA NA LTS-038 chr8 7332479 7752350 419872 * c(DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) NA 0 NA 0.131080094636108 79 0.10363123395838 0 NA NA -11.2223722106466 LTS-038 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 1.363 1 NA NA NA NA NA LTS-038 chr8 8175295 10102806 1927512 * c(MIR4660, CLDN23, LOC157273, SGK223, LINC00599, MIR124-1, MSRA, MIR597, PPP1R3B, TNKS, ERI1, MFHAS1) 0.198970470498949 43 0.0466650964773017 0.870865333757785 948 0.793024563690696 2 2 0 -6.7999793232057 LTS-038 chr8 10102807 10107911 5105 * MSRA NA 0 NA 0.422 1 NA NA NA NA NA LTS-038 chr8 10107912 11281742 1173831 * c(MIR1322, TDH, PRSS55, C8orf74, XKR6, MSRA, PINX1, MTMR9, MIR598, SOX7, FAM167A, SLC35G5, FAM167A-AS1, RP1L1) 0.174718802086733 44 0.0545549745039713 0.695300129528823 1129 0.277629954637559 2 2 0 -6.92505448397536 LTS-038 chr8 11281743 11281826 84 * c(FAM167A, FAM167A-AS1) NA 0 NA 0.902 1 NA NA NA NA NA LTS-038 chr8 11281827 11711060 429234 * c(CTSB, FDFT1, NEIL2, GATA4, BLK, FAM167A, LINC00208, FAM167A-AS1) 0.1569532275277 21 0.0477119831209449 0.872135889218432 561 0.334422438434908 3 3 0 -6.88045746229177 LTS-038 chr8 11711061 16885010 5173950 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, C8orf48, DEFB109P1, DEFB130, FGF20, MICU3, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, MSR1, MIR383, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, TUSC3, FAM86B1, LONRF1) 0.205593092957131 22 0.0550206769476248 0.720614866398919 919 0.319789091127091 2 2 0 -7.12124016571777 LTS-038 chr8 16885011 16885029 19 * MICU3 NA 0 NA 1.163 1 NA NA NA NA NA LTS-038 chr8 16885030 17156098 271069 * c(VPS37A, MICU3, CNOT7, ZDHHC2, MTMR7) 0.206368195435434 8 0.0334834714022136 0.956206899901574 326 0.326509490664668 2 2 0 -7.01675405429575 LTS-038 chr8 17156099 26613957 9457859 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, PNMA2, ADAM28, LZTS1, NKX2-6, ADRA1A, PEBP4, CDCA2, DPYSL2, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, GFRA2, ADAMDEC1, GNRH1, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, ASAH1, NEFM, NEFL, NKX3-1, PCM1, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, KCTD9, PIWIL2, INTS10, PPP2R2A, PPP3CC, CSGALNACT1, HR, BIN3, NA NA NA NA NA NA NA NA NA LTS-038 MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, EBF2, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, BNIP3L, STC1, NUDT18, DOCK5, BIN3-IT1, REEP4, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, CHMP7, ENTPD4, PHYHIP) 0.186730967256268 204 0.0488445178261104 0.786947020284181 7591 0.414650494448658 2 2 0 -6.74104665237035 LTS-038 NA NA NA NA LTS-038 chr8 26613958 27101394 487437 * c(ADRA1A, STMN4) 0.266267611599581 3 0.050806823688687 0.594523778910527 192 0.169030974588595 1 1 0 -6.8062411004254 LTS-038 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 0.901 1 NA NA NA NA NA LTS-038 chr8 27142392 27204598 62207 * c(PTK2B, TRIM35) 0.188 1 NA 0.863746100054398 103 0.235227037530186 2 2 0 -5.76853922887164 LTS-038 chr8 27204599 27328405 123807 * c(CHRNA2, PTK2B) 0 1 NA 0.935023591714734 255 0.235881436514233 3 3 0 -5.78240698689337 LTS-038 chr8 27328406 28040852 712447 * c(MIR4287, MIR3622A, MIR3622B, CHRNA2, CLU, ESCO2, EPHX2, SCARA5, NUGGC, SCARA3, ELP3, CCDC25, PBK) 0.123391269980357 31 0.0374565267723726 0.993566153175489 909 0.291479458653073 3 3 0 -6.87389474983981 LTS-038 chr8 28040853 28047075 6223 * ELP3 NA 0 NA 1.347 1 NA NA NA NA NA LTS-038 chr8 28047076 28950431 903356 * c(MIR4288, FBXO16, EXTL3, KIF13B, PNOC, ELP3, INTS9, ZNF395, HMBOX1, FZD3) 0.14348510947887 4 0.0412553026894725 1.11852319074288 987 0.439751039688007 3 3 0 -6.74684830108239 LTS-038 chr8 28950432 28956598 6167 * KIF13B NA 0 NA 0.837 1 NA NA NA NA NA LTS-038 chr8 28956599 37333555 8376957 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, NRG1-IT3, DCTN6, RBPMS, UNC5D, KCNU1, DUSP4, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, PURG, NRG1, SARAF, PPP2CB, TEX15, LINC00589, MBOAT4, WRN, DUSP26, RNF122, UBXN8, TTI2, MAK16, FUT10) 0.143661214486342 28 0.0347755273373 0.92125154519006 2427 0.33613281272759 3 3 0 -7.41861746645751 LTS-038 chr8 37333556 37373984 40429 * character(0) NA 0 NA 2.247 1 NA NA NA NA NA LTS-038 chr8 37373985 37716631 342647 * c(ERLIN2, PROSC, ADGRA2, BRF2, LOC728024, ZNF703, RAB11FIP1) 0.113672497264296 2 0.0325269119345812 1.10452151914316 676 0.348103638933188 4 4 0 -6.77856695739118 LTS-038 chr8 37716632 38117788 401157 * c(GOT1L1, ADRB3, EIF4EBP1, DDHD2, LSM1, STAR, RAB11FIP1, ASH2L, BAG4) 0.14174363415638 3 0.0335459883344243 0.891219182047341 710 0.294144472750449 3 3 0 -6.80775231981055 LTS-038 chr8 38117789 38120662 2874 * c(DDHD2, PLPP5) NA 0 NA 0.99 1 NA NA NA NA NA LTS-038 chr8 38120663 39142479 1021817 * c(LETM2, HTRA4, ADAM32, FGFR1, RNF5P1, C8orf86, WHSC1L1, PLEKHA2, TACC1, TM2D2, PLPP5, ADAM9) 0.145771011276499 27 0.0293275052485302 1.02267537627447 1346 0.337860457369164 3 3 0 -6.75477446106166 LTS-038 chr8 39142480 39311550 169071 * c(ADAM3A, ADAM5) NA 0 NA 1.794 1 NA NA NA NA NA LTS-038 chr8 39311551 39349526 37976 * ADAM3A NA 0 NA 1.94522418215019 57 0.676447453905133 7 NA NA -5.76456478406017 LTS-038 chr8 39349527 39442067 92541 * c(LOC100130964, ADAM3A) NA 0 NA 0.987 1 NA NA NA NA NA LTS-038 chr8 39442068 42213097 2771030 * c(AP3M2, GPAT4, NKX6-3, IDO2, ADAM2, ANK1, IKBKB, IDO1, GOLGA7, PLAT, POLB, C8orf4, MIR486-1, SFRP1, ZMAT4, KAT6A, GINS4, ADAM18) 0.133993916365016 25 0.0312592386343622 1.04760105678427 1957 0.352800091933473 3 3 0 -6.76055980283425 LTS-038 chr8 42213098 43056492 843395 * c(MIR4469, CHRNB3, SMIM19, HGSNAT, FNTA, DKK4, POLB, THAP1, SLC20A2, VDAC3, RNF170, POMK, HOOK3, CHRNA6) 0.131827661642456 8 0.0435264697790732 0.928362472575505 944 0.582256310043594 3 3 0 -6.7804776900514 LTS-038 chr8 43056493 43212050 155558 * c(HGSNAT, POTEA) NA 0 NA 1.02436288527559 77 0.429650706182718 3 NA NA -5.76472671550181 LTS-038 chr8 47752736 48686680 933945 * c(LOC100287846, CEBPD, SPIDR, LINC00293, PRKDC) 0 1 NA 1.27535820602054 303 0.486516021436473 4 4 0 -5.76541564995672 LTS-038 chr8 48686681 59536388 10849708 * c(SBF1P1, LINC00968, LINC01606, LYPLA1, XKR4, PCMTD1, TMEM68, UBXN2B, PXDNL, CYP7A1, SDR16C5, LINC00588, SNORD54, NPBWR1, LOC286177, MRPL15, FAM150A, LYN, MCM4, MOS, C8orf22, OPRK1, ATP6V1H, PENK, PLAG1, SNTG1, IMPAD1, PRKDC, RP1, RPS20, SDCBP, SOX17, SNAI2, TCEA1, UBE2V2, CHCHD7, EFCAB1, NSMAF, RGS20, FAM110B, TGS1, ST18, RB1CC1) 0.340207872927741 55 0.0954046494571787 1.29608185648696 4024 0.48038037492238 4 3 1 -6.80659150373091 LTS-038 chr8 59536389 59544003 7615 * NSMAF NA 0 NA 1.498 1 NA NA NA NA NA LTS-038 chr8 59544004 63891476 4347473 * c(LOC100130298, MIR4470, CLVS1, NKAIN3, ASPH, CHD7, RAB2A, UG0898H09, CA8, NSMAF, TOX) 0.312285849111281 17 0.0600250560427991 1.42875130718167 1098 0.446833600084772 4 3 1 -6.84900220692164 LTS-038 chr8 63891477 63902715 11239 * c(NKAIN3, UG0898H09) NA 0 NA 0.805 1 NA NA NA NA NA LTS-038 chr8 63902716 67960137 4057422 * c(TCF24, MIR124-2HG, LINC00967, RRS1-AS1, C8orf44-SGK3, YTHDF3-AS1, COPS5, ADHFE1, CRH, MCMDC2, RRS1, SGK3, YTHDF3, C8orf46, PTTG3P, BHLHE22, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, MIR124-2, MYBL1, PDE7A, ARMC1, LINC00251, C8orf44, SNHG6, SNORD87, TTPA, VCPIP1, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.347532258133165 30 0.0446229284911517 1.21243212236386 1853 0.53077846720934 3 2 1 -7.19906594271836 LTS-038 chr8 67960138 67963329 3192 * COPS5 NA 0 NA 1.44 1 NA NA NA NA NA LTS-038 chr8 67963330 71646980 3683651 * c(LINC01592, NCOA2, ARFGEF1, COPS5, C8orf34, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LACTB2, CPA6, PRDM14, CSPP1, PREX2, SLCO5A1) 0.366484619714078 53 0.056702275444982 1.33266414293123 2010 0.459784405526348 3 2 1 -7.30528649583601 LTS-038 chr8 71646981 71647653 673 * XKR9 NA 0 NA 1.03268789858003 15 0.14112851286277 3 NA NA -5.76441593658377 LTS-038 chr8 71647654 72109651 461998 * XKR9 NA 0 NA 1.97 1 NA NA NA NA NA LTS-038 chr8 72109652 72111599 1948 * EYA1 0.476 1 NA 1.71526455493756 41 0.469198891729296 6 6 0 -5.76442396656995 LTS-038 chr8 72111600 80677720 8566121 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, LOC101241902, STMN2, RDH10, SBSPON, EYA1, HEY1, LY96, STAU2, HNF4G, IL7, LOC392232, MIR2052HG, PI15, ZC2HC1A, GDAP1, TMEM70, UBE2W, PKIA, JPH1, PEX2, RPL7, TCEB1, TERF1, ZFHX4, CRISPLD1, TRPA1, MSC, KCNB2) 0.459353317349677 50 0.0276951332938346 1.65686279190926 2581 0.794855112534958 6 3 3 -6.95145062803982 LTS-038 chr8 80677721 81887681 1209961 * c(MIR5708, HEY1, MRPS28, PAG1, ZNF704, ZBTB10, TPD52) 0.459379012078406 3 0.0245153013442625 1.93759283745091 782 0.601379209736762 6 3 3 -6.94558587739015 LTS-038 chr8 81887682 81887685 4 * PAG1 NA 0 NA 1.159 1 NA NA NA NA NA LTS-038 chr8 81887686 94937972 13050287 * c(C8orf88, LRRC69, REXO1L2P, MIR378D2, MIR4661, LINC00534, WWP1, SLC26A7, FAM92A1, DCAF4L2, RALYL, SLC7A13, DECR1, CNBD1, TMEM64, E2F5, FABP4, FABP5, ATP6V0D2, REXO1L1P, TRIQK, SLC10A5, IMPA1, CA13, C8orf87, RBM12B, C8orf59, MMP16, FLJ46284, NBN, RMDN1, OTUD6B, PMP2, PDP1, CNGB3, RBM12B-AS1, TMEM55A, PAG1, SNX16, NECAB1, LINC00535, FABP9, FABP12, OSGIN2, CA1, CA2, CA3, CALB1, ZFAND1, LRRCC1, PSKH2, NA NA NA NA NA NA NA NA NA LTS-038 RUNX1T1, RIPK2, CPNE3, TMEM67, CHMP4C) 0.454934788832387 67 0.0380846078969082 1.65254164120642 4271 0.6041057665771 6 3 3 -6.93727543078526 LTS-038 NA NA NA NA LTS-038 chr8 94937973 106815715 11877743 * c(MIR875, LOC100288748, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR4471, C8orf37-AS1, MIR5680, FSBP, CDH17, RIDA, CPQ, POP1, CTHRC1, OSR2, COX6C, NDUFAF6, BAALC-AS2, ANKRD46, C8orf37, VPS13B, SNX31, DPYS, ERICH5, ZFPM2, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, DPY19L4, FBXO43, LRP12, KCNS2, GDF6, MATN2, FLJ42969, ODF1, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, ATP6V1C1, NA NA NA NA NA NA NA NA NA LTS-038 POLR2K, PDP1, ESRP1, LAPTM4B, INTS8, RPL30, LINC01298, SDC2, SPAG1, STK3, MIR599, KLF10, UQCRB, YWHAZ, PLEKHF2, NIPAL2, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, TSPYL5, CCNE2, MTDH, TP53INP1, RIMS2, PTDSS1) 0.440762785330271 118 0.0448599927361046 1.53844419601229 6423 1.21171604363748 6 3 3 -6.85964248911938 LTS-038 NA NA NA NA LTS-038 chr8 106815716 106815804 89 * ZFPM2 NA 0 NA 2.121 1 NA NA NA NA NA LTS-038 chr8 106815805 110357777 3541973 * c(ABRA, TMEM74, ZFPM2, ANGPT1, RSPO2, EIF3E, OXR1, ENY2, TRHR, NUDCD1, EMC2) 0.450159714892853 9 0.0237668069187073 1.70185853298686 857 0.849830163373326 6 3 3 -6.77254145523619 LTS-038 chr8 110357778 110437424 79647 * c(ENY2, PKHD1L1) 0.416 1 NA 1.69656787354028 123 0.499452525141331 6 6 0 -5.76514679986585 LTS-038 chr8 110437425 113516197 3078773 * c(CSMD3, KCNV1, SYBU, EBAG9, PKHD1L1) 0.400700837609794 23 0.0464648704907624 1.71262548559664 948 0.521529247053973 5 3 2 -6.85380311583138 LTS-038 chr8 113516198 113518907 2710 * CSMD3 NA 0 NA 2.788 1 NA NA NA NA NA LTS-038 chr8 113518908 118849541 5330634 * c(MIR2053, MIR3610, LINC00536, CSMD3, SLC30A8, EXT1, AARD, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H, MED30) 0.420249836232737 17 0.114066930816439 1.98797429214411 1094 4.34777141712775 7 4 3 -6.73760051311556 LTS-038 chr8 118849542 119122328 272787 * EXT1 NA 0 NA 3.718 1 NA NA NA NA NA LTS-038 chr8 119122329 119209597 87269 * c(EXT1, SAMD12) NA 0 NA 2.81826488419457 64 0.592114156732614 10 NA NA -5.76441099681683 LTS-038 chr8 119209598 124267901 5058304 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, COLEC10, ZHX1, MAL2, ZHX2, MTBP, MRPL13, HAS2, SAMD12, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, HAS2-AS1, DEPTOR, SNTB1, TAF2, COL14A1, DSCC1, DERL1, C8orf76, FAM83A, TBC1D31) 0.39388242844273 36 0.0528682924748506 1.64160525797827 1942 0.570237097511603 5 3 2 -6.85619248412579 LTS-038 chr8 124267902 129021179 4753278 * c(LINC00861, MIR1205, MIR1206, MIR1204, ZHX1-C8orf76, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, MYC, NDUFB9, POU5F1B, TRMT12, WDYHV1, PVT1, FER1L6, SQLE, CASC8, TATDN1, MTSS1, KIAA0196) 0.3380750313554 42 0.0791516612712436 1.08489099695725 2103 0.391324802208794 3 2 1 -6.91248139306647 LTS-038 chr8 129021180 129021231 52 * c(MIR1206, PVT1) NA 0 NA 1.637 1 NA NA NA NA NA LTS-038 chr8 129021232 140946146 11924915 * c(MIR1207, MIR1208, ASAP1-IT2, MIR5194, HHLA1, NDRG1, KHDRBS3, ADCY8, TMEM71, COL22A1, EFR3A, LRRC6, LINC01591, ASAP1-IT1, KCNQ3, MIR30B, MIR30D, ASAP1, FAM135B, PHF20L1, KCNK9, FAM49B, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, TG, LINC00977, OC90, TRAPPC9, WISP1, HPYR1) 0.412324281034533 73 0.106112426378646 1.57327722277903 3265 0.557727144770927 5 3 2 -6.73710658743857 LTS-038 chr8 140946147 141034189 88043 * TRAPPC9 0.319 1 NA 0.816717370020473 11 0.177346245827452 2 2 0 -5.76524375975468 LTS-038 chr8 141034190 141461062 426873 * TRAPPC9 0.14 1 NA 0.893535781954143 91 0.340523558681472 2 2 0 -5.79207510225186 LTS-038 chr8 141461063 142487589 1026527 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.145262505008069 23 0.0316651202729002 0.891480450980791 1120 0.295860707452756 3 3 0 -6.92893849366416 LTS-038 chr8 142487590 142487799 210 * MROH5 NA 0 NA 0.724 1 NA NA NA NA NA LTS-038 chr8 142487800 144590008 2102209 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, RHPN1, TOP1MT, LYPD2, CYP11B1, CYP11B2, TSNARE1, ZC3H3, ARC, GLI4, GML, C8orf31, ZFP41, GPIHBP1, MROH5, MAFA, LY6E, LY6H, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, RHPN1-AS1, ZNF696, PSCA, LY6D, JRK) 0.159056825902446 82 0.0509662197495121 0.770700461799121 1726 0.28963077799982 2 2 0 -6.90382293301862 LTS-038 chr8 144590009 144698370 108362 * c(EEF1D, ZC3H3, MROH6, PYCRL, TSTA3, GSDMD, TIGD5, NAPRT) 0.156424388768318 24 0.0466882972644032 0.910711090886829 549 0.292962987957576 3 3 0 -6.81574696483746 LTS-038 chr8 144698371 144825206 126836 * c(FAM83H-AS1, CCDC166, MIR4664, MAPK15, ZNF707, BREA2, FAM83H, TSTA3, ZNF623) 0.114 1 NA 0.727074728604016 422 0.254985566048265 2 2 0 -5.77473103024618 LTS-038 chr8 144825207 144873106 47900 * c(FAM83H-AS1, SCRIB) NA 0 NA 1.214 1 NA NA NA NA NA LTS-038 chr8 144873107 144923006 49900 * c(MIR937, PUF60, SCRIB, NRBP2) 0.144967884968696 5 0.0444780844911289 0.933424472572424 372 0.263848966124931 3 3 0 -6.74454527756258 LTS-038 chr8 144923007 144923032 26 * NRBP2 NA 0 NA 0.709 1 NA NA NA NA NA LTS-038 chr8 144923033 145001607 78575 * c(NRBP2, PLEC, EPPK1) 0.0821837010917962 2 0.103944696834422 0.70157660736688 398 0.260400799311203 3 3 0 -7.02848634202083 LTS-038 chr8 145001608 146203412 1201805 * c(MIR939, MIR1234, MFSD3, CYC1, ADCK5, BOP1, FBXL6, OPLAH, ZNF252P, GPT, COMMD5, GRINA, CPSF1, HSF1, ZNF517, WDR97, TMEM249, SPATC1, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, SCX, MIR661, MROH1, ZNF7, ZNF16, SLC52A2, ARHGAP39, ZNF34, SHARPIN, SCRT1, MAF1, PARP10, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, RECQL4, LRRC14) 0.146091781805339 65 0.0377607918858457 0.832110098599157 3458 0.262295111682933 3 3 0 -7.26581574352745 LTS-038 chr8 146203413 146280905 77493 * c(ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33) NA 0 NA 0.831648580214102 165 0.217952039280342 2 NA NA -5.76600699945371 LTS-038 chr9 14732 214706 199975 * c(WASH1, C9orf66, FOXD4, CBWD1, FAM138C) 0.16 1 NA 0.733862298616594 41 0.583597379380264 2 2 0 -5.76693591716171 LTS-038 chr9 214707 1057586 842880 * c(DMRT2, C9orf66, DMRT1, KANK1, DMRT3, DOCK8) 0.180359034229746 8 0.0329347298238718 0.661606070656611 693 0.224682747565186 2 2 0 -7.08081247154822 LTS-038 chr9 2028932 4298499 2269568 * c(KCNV2, GLIS3, VLDLR-AS1, RFX3, SMARCA2, VLDLR, GLIS3-AS1, PUM3) 0.181275792815669 17 0.0399517171831494 0.836293712810087 936 0.252665780046233 2 2 0 -6.78300010945784 LTS-038 chr9 4298500 4490446 191947 * c(GLIS3, SLC1A1) NA 0 NA 0.567 1 NA NA NA NA NA LTS-038 chr9 4490447 8633489 4143043 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, RIC1, PTPRD, RLN1, RLN2, SLC1A1, ERMP1, PDCD1LG2, TPD52L3, IL33, TMEM261) 0.194489007186971 44 0.0563001808115039 0.728062872302557 2560 0.280187682075368 2 2 0 -7.01005311946971 LTS-038 chr9 8633490 8636677 3188 * PTPRD NA 0 NA 1.018 1 NA NA NA NA NA LTS-038 chr9 8636678 14617342 5980665 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.20238104053302 7 0.0459290342863443 0.854677906976729 703 0.314569068660711 2 2 0 -6.9794788718134 LTS-038 chr9 14617343 21367425 6750083 * c(C9orf92, MIR3152, MIR4473, MIR4474, RRAGA, PSIP1, PLIN2, TTC39B, SAXO1, FREM1, CCDC171, SLC24A2, ZDHHC21, ACER2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, LOC389705, HACD4, MLLT3, BNC2, HAUS6, CNTLN, FOCAD, DENND4C, KLHL9, MIR491, RPS6, SH3GL2, SNAPC3, SCARNA8, ADAMTSL1, CER1) 0.191380921463212 58 0.0715660550958642 0.731439906672627 3297 0.268818953572645 2 2 0 -7.14311868487183 LTS-038 chr9 21367426 21441162 73737 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.154 1 NA 0.453728838387944 71 0.206478489435577 1 1 0 -5.80054836810047 LTS-038 chr9 21441163 27546622 6105460 * c(CDKN2B-AS1, IZUMO3, LOC100506422, CDKN2A, CDKN2B, LINC00032, ELAVL2, C9orf72, TUSC1, IFNE, IFNA1, MIR31, LINC01239, MTAP, CDKN2A-AS1, EQTN, MIR31HG, IFNK, DMRTA1, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.194012643694138 36 0.0531243823493507 0.757004792347718 1472 0.253544313662547 2 2 0 -6.90987057735719 LTS-038 chr9 27546623 32629615 5082993 * c(MIR876, MIR873, TOPORS-AS1, TOPORS, TAF1L, LINGO2, C9orf72, DDX58, LINC01242, NDUFB6, ACO1) 0.183623268200626 14 0.0289599951429782 0.882015500813504 626 0.334453327332198 2 2 0 -6.99136134276608 LTS-038 chr9 32629616 32629883 268 * TAF1L NA 0 NA 0.616 1 NA NA NA NA NA LTS-038 chr9 32629884 32973717 343834 * c(TAF1L, TMEM215, APTX) 0.227545591324274 2 0.0304055915910216 0.608594486118177 193 0.196486640767254 1 1 0 -7.78377986320073 LTS-038 chr9 32973718 32974355 638 * APTX NA 0 NA 0.843 1 NA NA NA NA NA LTS-038 chr9 32974356 34723813 1749458 * c(SNORD121A, SNORD121B, SIGMAR1, CCL27, PTENP1, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, B4GALT1, DNAI1, SPINK4, ANXA2P2, NUDT2, DNAJA1, KIF24, IL11RA, AQP3, AQP7, ENHO, CNTFR-AS1, SUGT1P1, ANKRD18B, NFX1, UBAP1, CHMP5, APTX, UBE2R2, SMU1, UBAP2, PRSS3, BAG1, KIAA1161, CCL19, CCL21, NOL6, C9orf24) 0.229151648746628 61 0.107306493776273 0.784457512201825 2630 0.2711714264972 2 2 0 -6.83751509224361 LTS-038 chr9 34723814 34723912 99 * FAM205A NA 0 NA 0.457 1 NA NA NA NA NA LTS-038 chr9 34723913 34726318 2406 * FAM205A NA 0 NA 0.27476915119623 70 0.177034876843654 0 NA NA -5.76465433422798 LTS-038 chr9 34726319 34971247 244929 * c(PHF24, FAM205A, FAM205BP) 0.47716182829332 2 0.015556349186104 0.583911342184847 172 0.200770286248581 2 1 1 -8.93366084382905 LTS-038 chr9 34971248 36163929 1192682 * c(MIR4667, CREB3, UNC13B, C9orf131, GLIPR2, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, RECK, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.204542806280372 48 0.0468022662662779 0.810364881781377 2941 0.267701960691981 2 2 0 -6.83785584258512 LTS-038 chr9 36163930 36169340 5411 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-038 chr9 36169341 40503105 4333765 * c(GNE, FAM95C, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, FAM201A, TRMT10B, ALDH1B1, FRMPD1, ANKRD18A, FBXO10, IGFBPL1, TOMM5, FAM74A1, ZNF658B, PAX5, EXOSC3, NA, POLR1E, SHB, NA, DCAF10, CNTNAP3, ZCCHC7, CCIN, SLC25A51, GRHPR, MELK, ZBTB5) 0.185982775306465 28 0.0776968059240124 0.726146688262482 1986 0.362519402985094 2 2 0 -6.90750549779473 LTS-038 chr9 40503106 44175697 3672592 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.807849921087002 61 0.469414829300495 2 NA NA -5.76570113162111 LTS-038 chr9 65602571 66457127 854557 * LOC286297 0.446 1 NA 1.62259567267688 4 0.635954925027448 5 5 0 -5.7668089251511 LTS-038 chr9 66457128 68409789 1952662 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2) 0.35604382137937 15 0.0843235266272536 1.26464979061633 39 0.530717455473117 3 2 1 -6.91921035075318 LTS-038 chr9 68409790 68415345 5556 * character(0) 0.066 1 NA 1.52697822860769 5 1.33380515818466 5 5 0 -5.76441069077004 LTS-038 chr9 68415346 69120851 705506 * c(FRG1HP, PGM5P2, FRG1JP) 0.301707515088264 5 0.0557879915393985 1.17803143844469 16 0.54137226871473 4 3 1 -6.75229183985436 LTS-038 chr9 69120852 69256369 135518 * c(LOC440896, PGM5P2, CBWD6, FOXD4L6) NA 0 NA 0.515 1 NA NA NA NA NA LTS-038 chr9 69256370 79270499 10014130 * c(LOC100133920, MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, TMEM252, ALDH1A1, SMC5, TMEM2, FXN, MAMDC2, GCNT1, OSTF1, FOXD4L3, ANXA1, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, PRKACG, PGM5-AS1, RORB, CBWD6, RPSAP9, FOXD4L5, KLF9, ANKRD20A4, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.18172420679439 83 0.0428448636257901 0.799129155173889 3939 0.2845791538373 2 2 0 -6.73657424608296 LTS-038 chr9 79270500 79302469 31970 * PRUNE2 NA 0 NA 0.658 1 NA NA NA NA NA LTS-038 chr9 79302470 79465583 163114 * c(PRUNE2, PCA3) 0.182 1 NA 0.619714008764233 196 0.138157437836381 1 1 0 -5.84295198923764 LTS-038 chr9 79465584 79469003 3420 * PRUNE2 NA 0 NA 1.242 1 NA NA NA NA NA LTS-038 chr9 79469004 84530373 5061370 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, PSAT1, SPATA31D5P, FOXB2, TLE1, TLE4, CEP78, GNA14) 0.184839547964057 19 0.0721155262256819 0.852982088318085 1476 0.33428165879211 2 2 0 -6.84819269235809 LTS-038 chr9 84530374 84530454 81 * SPATA31D5P NA 0 NA 0.576 1 NA NA NA NA NA LTS-038 chr9 84530455 85605423 1074969 * c(RASEF, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) NA 0 NA 0.630470415993676 223 0.149864184868144 1 NA NA -6.29244137142348 LTS-038 chr9 85605424 85607812 2389 * RASEF NA 0 NA 0.826 1 NA NA NA NA NA LTS-038 chr9 85607813 96938734 11330922 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR3153, MIR4290, MIR4289, MIR3910-1, MIR3910-2, GAS1RR, MIR4670, SEMA4D, SPTLC1, GADD45G, SPIN1, CKS2, PTPDC1, ANKRD19P, CTSL, CTSLP8, NXNL2, RASEF, FAM120AOS, LINC00475, DAPK1, ECM2, S1PR3, SUSD3, FAM120A, AGTPBP1, BICD2, CDK20, FRMD3, GAS1, C9orf47, SPATA31E1, LOC286238, MIR4290HG, UBQLN1, HNRNPK, IARS, LINC01501, LOC389765, C9orf153, NA NA NA NA NA NA NA NA NA LTS-038 CTSL3P, LOC392364, C9orf170, CENPP, MIRLET7A1, MIRLET7F1, MIR7-1, IDNK, LOC440173, SPATA31C1, C9orf129, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, OMD, OGN, GOLM1, PHF2, SHC3, DIRAS2, ASPN, AUH, NOL8, KIF27, BARX1, NAA35, SLC28A3, SPATA31C2, IPPK, WNK2, SYK, SECISBP2, ZCCHC6, RMI1, GKAP1, ISCA1, ZNF484, C9orf64, CARD19, FGD3) 0.177172355684771 115 0.0581522568203748 0.808583586829048 6461 0.282870055272923 2 2 0 -6.75667385525524 LTS-038 NA NA NA NA LTS-038 chr9 96938735 96941092 2358 * MIRLET7DHG NA 0 NA 0.523 1 NA NA NA NA NA LTS-038 chr9 96941093 97522885 581793 * c(LOC100132077, MIRLET7DHG, ZNF169, FBP1, MIRLET7D, NUTM2F, MFSD14B, C9orf3, FBP2) 0.201236636675346 7 0.035136468641163 0.700732135755531 414 2.35728907788366 7 6 1 -6.82906672599491 LTS-038 chr9 97522886 97525266 2381 * C9orf3 NA 0 NA 0.892 1 NA NA NA NA NA LTS-038 chr9 97525267 98729883 1204617 * c(LINC00476, MIR2278, MIR3074, LOC100507346, FANCC, ERCC6L2, MIR23B, PTCH1, C9orf3) 0.15335482547652 7 0.0201577115103211 0.915349544545798 641 0.33347648076218 3 3 0 -7.08135027071954 LTS-038 chr9 98729884 99637864 907981 * c(LOC100132781, LINC00092, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ZNF510, HABP4, HSD17B3, ERCC6L2, LOC441455, CDC14B) 0.208313104339026 7 0.0434697486491359 0.766411823707207 878 1.96863652438321 6 5 1 -6.8871149108898 LTS-038 chr9 99637865 99690566 52702 * LOC441454 NA 0 NA 0.444 1 NA NA NA NA NA LTS-038 chr9 99690567 99960312 269746 * c(CTSV, GAS2L1P2, NUTM2G, MFSD14C) NA 0 NA 0.565534232272388 183 0.256518713698224 1 NA NA -5.76710276695596 LTS-038 chr9 99960313 99960494 182 * character(0) NA 0 NA 0.811 1 NA NA NA NA NA LTS-038 chr9 99960495 107266748 7306254 * c(CCDC180, LOC100499484, MSANTD3-TMEFF1, NAMA, ANP32B, SMC2, SEC61B, GRIN3A, COL15A1, OR13F1, CYLC2, TSTD2, ANKS6, ALDOB, FOXE1, ERP44, TDRD7, INVS, LOC286359, MURC, STX17-AS1, NCBP1, TRMO, NANS, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, LOC100499484-C9ORF174, TGFBR1, TMOD1, CORO2A, XPA, ZNF189, GALNT12, NR4A3, TMEM246, ALG2, TMEFF1, MSANTD3, GABBR2, TRIM14) 0.203368038744561 52 0.0603241120258258 0.780719405020777 4084 0.265818699749149 2 2 0 -6.82016437078701 LTS-038 chr9 107266749 107266774 26 * OR13F1 0.157 1 NA 0.325 1 NA NA NA NA NA LTS-038 chr9 107266775 107457836 191062 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.182975988576926 16 0.0436218122044465 0.616458797157013 206 0.157618314472235 2 2 0 -7.02896570585 LTS-038 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.309 1 NA NA NA NA NA LTS-038 chr9 107509996 111882315 4372320 * c(MIR548Q, ACTL7B, ACTL7A, ABCA1, FKTN, SLC44A1, TMEM245, NIPSNAP3A, NA, MIR32, FAM206A, TMEM38B, NIPSNAP3B, ZNF462, RAD23B, TAL2, FSD1L, IKBKAP, CTNNAL1, KLF4) 0.168753218099966 50 0.0641846316401014 0.865370697872582 2364 2.53106332403311 2 2 0 -6.77390165736687 LTS-038 chr9 111882316 111899150 16835 * character(0) NA 0 NA 0.61 1 NA NA NA NA NA LTS-038 chr9 111899151 116171174 4272024 * c(FAM225B, MIR3134, MIR4668, AKAP2, PALM2, WDR31, SLC31A1, SLC31A2, RNF183, ZNF483, C9orf84, KIAA1958, ZNF883, LPAR1, ALAD, PTGR1, FKBP15, KIAA0368, FRRS1L, CDC26, TXNDC8, OR2K2, GNG10, FAM225A, C9orf152, SNX30, PALM2-AKAP2, MUSK, POLE3, EPB41L4B, BSPRY, DNAJC25, DNAJC25-GNG10, PTPN3, SLC46A2, INIP, SUSD1, LRRC37A5P, TXN, UGCG, ZFP37, SVEP1, HDHD3, HSDL2, PRPF4, PTBP3) 0.185892994983057 109 0.0669666162563889 0.759784813468053 4450 0.269769166020863 2 2 0 -6.81984284612308 LTS-038 chr9 116171175 116171180 6 * POLE3 NA 0 NA 1.084 1 NA NA NA NA NA LTS-038 chr9 116171181 125282407 9111227 * c(SNORA70C, ASTN2-AS1, LOC100288842, LOC100505478, MIR4478, CNTRL, KIF12, ZNF618, DAB2IP, TTLL11, BRINP1, MEGF9, TMEM268, STOM, TRIM32, ASTN2, PSMD5-AS1, MORN5, C9orf43, WHRN, AMBP, PHF19, FBXW2, OR1J4, LHX6, OR1J2, GGTA1P, GSN, TNC, OR1J1, MIR147A, NDUFA8, ORM1, ORM2, DEC1, PAPPA, RAB14, POLE3, CDK5RAP2, PSMD5, PTGS1, LINC00474, RGS3, MIR455, TLR4, TRAF1, C5, AKNA, COL27A1, MRRF, RBM18, TNFSF8, NA NA NA NA NA NA NA NA NA LTS-038 ATP6V1G1, TNFSF15) 0.176364694824846 66 0.0704249323433903 0.824247560846933 5148 0.255842850455908 2 2 0 -6.82358824238962 LTS-038 NA NA NA NA LTS-038 chr9 125282408 125288549 6142 * character(0) NA 0 NA 0.644 1 NA NA NA NA NA LTS-038 chr9 125288550 125562556 274007 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1L3, OR1L1, OR1B1, OR1L6, OR5C1, OR1K1) 0.154600322711553 11 0.0332606783946559 0.602077112076099 296 0.281500813832346 2 2 0 -7.3580951793833 LTS-038 chr9 125562557 125562562 6 * OR1K1 NA 0 NA 0.864 1 NA NA NA NA NA LTS-038 chr9 125562563 138523332 12960770 * c(LOC100129034, LINC01502, RNU6ATAC, LOC100272217, SLC25A25-AS1, MIR181A2HG, MIR3154, SH2D3C, MIR3689A, MIR3911, MIR3689B, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR3960, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, LOC101448202, RABEPK, CDK9, LAMC3, OLFM1, ZER1, CEL, CELP, POMT1, ZBTB6, NEK6, USP20, SLC27A4, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, SLC25A25, COL5A1, C9orf116, NA NA NA NA NA NA NA NA NA LTS-038 CRAT, PTRH1, PIP5KL1, DBH-AS1, ASB6, C9orf62, AK8, TTC16, DBH, STKLD1, OLFML2A, SARDH, DNM1, TOR1A, ENDOG, ENG, AK1, NAIF1, FCN1, FCN2, DOLK, FNBP1, SETX, ZBTB43, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, PHYHD1, CIZ1, GAPVD1, GBGT1, NR6A1, LINC00094, SNORA65, SNORD62A, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 SCAI, CFAP157, FAM78A, RAPGEF1, NTMT1, PKN3, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, ADGRD2, QRFP, GLT6D1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, TMEM8C, OR1K1, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, ZBTB34, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, ASS1, ODF2, PAEP, PDCL, PBX3, MRPS2, COQ4, CERCAM, PRRX2, SPOUT1, C9orf78, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, LRRC8A, BARHL1, SH3GLB2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 PSMB7, REXO4, DOLPP1, ZBTB26, DENND1A, GPR107, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, SET, FAM163B, DDX31, FAM129B, SPTAN1, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TSC1, TTF1, VAV2, ZNF79, C9orf16, MAPKAP1, PTGES2, BRD3, NUP214, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, LRSAM1, GTF3C5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 GTF3C4, LHX2, MED27, PTGES, RALGPS1, ADAMTSL2, PPP1R26) 0.171255466457088 273 0.0488757397797902 0.784593912940459 17121 0.331755585200264 2 2 0 -6.8025904607959 LTS-038 NA NA NA NA LTS-038 chr9 138523333 138523411 79 * GLT6D1 0.156 1 NA 0.887733682962959 3 0.773517506804684 2 2 0 -5.76441100785748 LTS-038 chr9 138523412 138679911 156500 * c(GLT6D1, LCN9, SOHLH1, KCNT1) 0.119665520935864 8 0.0596727683764905 0.795399663685252 242 0.402687867060627 3 3 0 -6.85105405191964 LTS-038 chr9 138679912 139973629 1293718 * c(LOC100128593, CCDC183-AS1, MIR4292, MIR4673, MIR4674, MIR4479, UBAC1, AGPAT2, SDCCAG3, NACC2, LCN8, FAM69B, CAMSAP1, C9orf163, MAMDC4, LCN6, QSOX2, ABCA2, PMPCA, FUT7, GPSM1, DKFZP434A062, LCN12, C9orf142, PHPT1, LCN15, C9orf172, LCNL1, C9orf139, MIR126, LCN10, NOTCH1, EGFL7, FBXW5, RABL6, INPP5E, NPDC1, PTGDS, KCNT1, CARD9, SNAPC4, SNORA17A, SNORA17B, TRAF2, DNLZ, C8G, LHX3, CCDC183, SNHG7, TMEM141, NA NA NA NA NA NA NA NA NA LTS-038 EDF1, SAPCD2, C9orf69, CLIC3, UAP1L1, ENTPD2, SEC16A) 0.108501261705319 116 0.0373971352798103 1.16743547380373 3861 1.56186015779044 4 4 0 -6.74754214714902 LTS-038 NA NA NA NA LTS-038 chr9 139973630 139975195 1566 * UAP1L1 0.148 1 NA 1.24733309933802 13 0.312188203426994 4 4 0 -5.76442780834391 LTS-038 chr9 139975196 139997791 22596 * c(MAN1B1-AS1, MAN1B1, UAP1L1) 0.287425302567995 9 0.121776434501918 1.30975773548102 149 0.408518832152781 4 3 1 -6.74807042411047 LTS-038 chr9 139997792 140001341 3550 * MAN1B1 NA 0 NA 1.18802494061301 17 0.403502241410787 4 NA NA -5.76451973998235 LTS-038 chr9 140001342 140001695 354 * MAN1B1 NA 0 NA 0.904 1 NA NA NA NA NA LTS-038 chr9 140001696 140003640 1945 * MAN1B1 0.101 1 NA 0.903336254226879 41 0.322626416894291 2 2 0 -5.76457988998225 LTS-038 chr9 140003641 140064068 60428 * c(MIR3621, GRIN1, DPP7, LRRC26) 0.0989757416126509 5 0.0323465608681974 0.97787729224837 245 0.37587977041419 5 5 0 -6.79600038324854 LTS-038 chr9 140064069 140904391 840323 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, TPRN, ANAPC2, PNPLA7, CYSRT1, ENTPD8, LRRC26, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, SSNA1, ARRDC1, DPH7, TMEM203) 0.103750918736183 29 0.0552030510686741 1.22652207461339 1793 0.382158557248926 4 4 0 -6.76397374362822 LTS-038 chr9 140904392 140911670 7279 * CACNA1B 0.07 1 NA 1.83327012803006 15 0.497485132584741 6 6 0 -5.76441436208333 LTS-038 chr9 140911671 141070317 158647 * c(TUBBP5, CACNA1B) 0.255459394108303 9 0.146434285602792 1.0843777441896 247 0.421051729914524 5 4 1 -6.80170917446709 LTS-038 chr9 141070318 141071759 1442 * TUBBP5 NA 0 NA 1.35113246368621 3 0.257498220058573 4 NA NA -5.76442808772391 LTS-038 chr10 94832 94870 39 * TUBB8 0.25 1 NA 2.095 1 NA NA NA NA NA LTS-038 chr10 94871 4882008 4787138 * c(LINC00704, PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, KLF6, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, LINC00705, IDI1, TUBB8, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, AKR1E2, IDI2) 0.397307799128874 50 0.0730731699275822 1.1223740940349 1744 0.377641919108324 3 2 1 -6.85584677486554 LTS-038 chr10 4882009 5032198 150190 * c(AKR1C1, AKR1C2, AKR1C6P, AKR1E2, AKR1C3) 0.419827242855754 3 0.0460579345317757 0.693540651148362 185 0.321321659421149 2 1 1 -6.92302405711063 LTS-038 chr10 5032199 8051104 3018906 * c(MIR3155A, LINC00707, MIR3155B, NET1, AKR1C4, UCN3, AKR1C2, KIN, GDI2, AKR1C8P, IL2RA, IL15RA, ITIH2, LOC399715, PRKCQ-AS1, ATP5C1, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, TUBAL3, ITIH5, CALML3, TAF3, FBXO18, RBM17, AKR1C3) 0.402457721686519 57 0.069858265926773 0.999307577114753 2343 0.348415453309032 3 2 1 -6.8339132570203 LTS-038 chr10 8051105 8051191 87 * TAF3 NA 0 NA 1.316 1 NA NA NA NA NA LTS-038 chr10 8051192 11962009 3910818 * c(CELF2, SFTA1P, PROSER2-AS1, LINC00710, PROSER2, GATA3, GATA3-AS1, CELF2-AS2, ECHDC3, TAF3, USP6NL) 0.367722094978335 15 0.109270176299718 1.12801318516835 704 0.407800644364098 3 2 1 -6.81100034398229 LTS-038 chr10 11962010 11962108 99 * UPF2 NA 0 NA 1.008 1 NA NA NA NA NA LTS-038 chr10 11962109 17813397 5851289 * c(ST8SIA6-AS1, PPIAP30, MIR1265, MIR4480, OPTN, RPP38, NUDT5, TRDMT1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, UPF2, NA, ST8SIA6, C1QL3, ACBD7, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, CDC123, HACD1, PTER, NMT2) 0.387615715967547 107 0.0791422630192188 0.944394761057035 3987 0.442757849911804 3 2 1 -6.93518817164119 LTS-038 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.001 1 NA NA NA NA NA LTS-038 chr10 17842448 18196475 354028 * c(MRC1, NA, TMEM236) 0.402003610049493 2 0.0148492424049174 0.485072939555452 159 0.395588989073775 3 2 1 -8.5843231182461 LTS-038 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.312 1 NA NA NA NA NA LTS-038 chr10 18198201 18276654 78454 * c(SLC39A12, MRC1) 0.39846195768105 3 0.00950438495292215 0.817254542931964 40 0.441738313733949 13 8 5 -7.41966582823992 LTS-038 chr10 18276655 18280022 3368 * SLC39A12 NA 0 NA 2.277 1 NA NA NA NA NA LTS-038 chr10 18280023 18970585 690563 * c(SLC39A12-AS1, SLC39A12, NSUN6, ARL5B, CACNB2) 0.430980660634073 10 0.040100429479551 1.53243015289074 455 0.546333354855337 5 3 2 -6.82621962314632 LTS-038 chr10 18970586 19337857 367272 * character(0) NA 0 NA 0.882 1 NA NA NA NA NA LTS-038 chr10 19337858 25684956 6347099 * c(NEBL-AS1, GPR158-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ENKUR, ARMC3, OTUD1, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, PIP4K2A, KIAA1217, PRTFDC1, GPR158, ARHGAP21, DNAJC1, BMI1, MIR603, THNSL1, MLLT10, PLXDC2, SPAG6) 0.403714592666743 51 0.055120965016169 1.07252815720504 2604 0.46923843656694 3 2 1 -6.85422711862698 LTS-038 chr10 25684957 25701130 16174 * GPR158 NA 0 NA 0.765 1 NA NA NA NA NA LTS-038 chr10 25701131 27602830 1901700 * c(ABI1, YME1L1, ANKRD26, PDSS1, GAD2, LINC00202-1, LRRC37A6P, MYO3A, APBB1IP, GPR158, LINC00264, LINC00202-2, MASTL, ACBD5) 0.397516341042445 18 0.0588113189941364 0.930328467225425 1381 0.376646177103741 3 2 1 -6.90492229657134 LTS-038 chr10 27602831 27605463 2633 * character(0) NA 0 NA 0.528 1 NA NA NA NA NA LTS-038 chr10 27605464 27703319 97856 * PTCHD3 NA 0 NA 0.581887473819555 67 0.242567718680033 1 NA NA -5.76819423881296 LTS-038 chr10 27703320 27793079 89760 * character(0) NA 0 NA 1.24 1 NA NA NA NA NA LTS-038 chr10 27793080 27822981 29902 * RAB18 NA 0 NA 1.52094793366521 43 0.722448462335478 5 NA NA -5.76442556290964 LTS-038 chr10 27822982 27826800 3819 * RAB18 NA 0 NA 0.857 1 NA NA NA NA NA LTS-038 chr10 27826801 28284137 457337 * c(RAB18, MKX, ARMC4) 0.447 1 NA 0.933019976120535 256 0.272110362260218 3 3 0 -5.81593704013064 LTS-038 chr10 28284138 28339914 55777 * ARMC4 NA 0 NA 1.34 1 NA NA NA NA NA LTS-038 chr10 28339915 28971813 631899 * c(MIR5586, MPP7, WAC-AS1, BAMBI, WAC) 0.475458148348904 4 0.0135984067694222 1.38247976130652 312 0.67704028075102 4 2 2 -8.83105743298473 LTS-038 chr10 28971814 31818710 2846897 * c(MIR938, LINC00837, LYZL2, MAP3K8, ZNF438, ZEB1-AS1, BAMBI, PTCHD3P1, MTPAP, KIAA1462, SVIL, MIR604, ZEB1, LYZL1) 0.445340918189218 32 0.0446910090546475 1.13539360989041 1015 0.696209104219645 4 2 2 -6.79838073843706 LTS-038 chr10 31818711 31821534 2824 * ZEB1 NA 0 NA 1.441 1 NA NA NA NA NA LTS-038 chr10 31821535 35343476 3521942 * c(LINC00838, NA, ITGB1, KIF5B, PARD3, CCDC7, EPC1, CUL2, NRP1, ARHGAP12) 0.410337961914421 52 0.0799606615195783 1.37693839034425 1297 0.567243801671393 5 3 2 -6.82925309945345 LTS-038 chr10 35343477 35349739 6263 * CUL2 NA 0 NA 0.99 1 NA NA NA NA NA LTS-038 chr10 35349740 38672144 3322405 * c(LOC100129055, MTRNR2L7, ZNF33BP1, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, SEPT7P9, ZNF248, ZNF33A, ZNF37A, FZD8, CUL2, ANKRD30A) 0.422875414499231 16 0.0934285600516958 1.16408009039985 1031 0.345024965228253 4 2 2 -6.96887064154748 LTS-038 chr10 38672145 38740384 68240 * c(SEPT7P9, LINC00999) NA 0 NA 0.899963323128473 5 0.0749579882334098 2 NA NA -5.86643861944811 LTS-038 chr10 42379879 44870126 2490248 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, ZNF32, ZNF33B, ZNF239, LINC00839, BMS1) 0.411647855785143 21 0.0974601994466996 1.16532904739865 1040 0.423374812610382 3 2 1 -6.88630059076523 LTS-038 chr10 44870127 45498820 628694 * c(C10orf10, C10orf25, TMEM72-AS1, CXCL12, TMEM72, ZNF22, RASSF4) 0.413056291430067 7 0.0328727706106292 1.52332825677461 345 0.398570776042769 5 3 2 -6.73620788330546 LTS-038 chr10 45498821 47673864 2175044 * c(RSU1P2, MIR3156-1, AGAP4, MARCH8, ALOX5, FAM21C, PTPN20, ANKRD30BP3, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, ZNF22, OR13A1, SYT15, ZFAND4, GPRIN2) 0.348765349252226 41 0.105232883435253 1.22762441283642 713 0.673618352091442 4 3 1 -6.83719074266848 LTS-038 chr10 47673865 47701275 27411 * c(PTPN20, GLUD1P7, NA, NA) 0.44 1 NA 1.35975680823719 47 0.276469027260248 4 4 0 -5.76481665256636 LTS-038 chr10 47701276 47756145 54870 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 1.33052908882304 5 0.0501667220376217 4 NA NA -5.7705856923168 LTS-038 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.122 1 NA NA NA NA NA LTS-038 chr10 47903105 48033067 129963 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.45378126916138 42 0.316240970362248 1 NA NA -5.79157025722501 LTS-038 chr10 48033068 49813153 1780086 * c(ZNF488, FRMPD2, CTSLP2, PTPN20, GDF2, GDF10, NA, GLUD1P7, NA, MAPK8, ARHGAP22, RBP3, NA, NA, FRMPD2B) 0.417926783014798 11 0.0464810811953735 1.14962350875754 716 0.406859258248095 4 2 2 -7.02669931241175 LTS-038 chr10 49813154 49860168 47015 * c(NA, ARHGAP22) NA 0 NA 0.696 1 NA NA NA NA NA LTS-038 chr10 49860169 51556866 1696698 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, MSMB, LRRC18, NA, OGDHL, WDFY4, ARHGAP22, DRGX, AGAP7P, SLC18A3, NA, PARGP1, PARG) 0.381037699379667 39 0.078303339363437 0.901313716726781 1594 0.298697245180089 3 2 1 -6.98912247895086 LTS-038 chr10 51556867 51562226 5360 * c(MSMB, NA, PARG) NA 0 NA 1.933 1 NA NA NA NA NA LTS-038 chr10 51562227 51584699 22473 * c(MSMB, NA, NCOA4, PARG) 0.486177052426701 2 0.00282842712474619 1.59766361067402 58 0.618640793218878 6 3 3 -18.0593663884426 LTS-038 chr10 51584700 59986974 8402275 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, SGMS1, A1CF, NA, FAM21A, AGAP6, MBL2, NA, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, NCOA4, PARG) 0.397196404865692 39 0.0476663222055634 0.996567916500969 1423 0.434914714344913 3 2 1 -6.88729634297278 LTS-038 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.587 1 NA NA NA NA NA LTS-038 chr10 59997544 65384711 5387168 * c(MIR1296, MRLN, MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, SLC16A9, FAM13C, REEP3, JMJD1C, ZNF365, IPMK, LINC01553, ANK3, NRBF2, CISD1, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, ARID5B, PHYHIPL, ADO, JMJD1C-AS1, CDK1, RHOBTB1) 0.408865091724978 57 0.0508915131951116 1.16043479570397 2956 0.390232382240484 3 2 1 -7.13035787779202 LTS-038 chr10 65384712 71075798 5691087 * c(DNA2, STOX1, ATOH7, REEP3, SIRT1, HERC4, KIF1BP, CTNNA3, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, SNORD98, DDX50, HKDC1, TET1, SLC25A16, MYPN, DDX21, VPS26A) 0.373010034729008 13 0.135988970140964 0.979554370494475 2326 0.392349041749401 3 2 1 -6.84042194268666 LTS-038 chr10 71075799 71078649 2851 * HK1 NA 0 NA 1.959 1 NA NA NA NA NA LTS-038 chr10 71078650 72643670 1565021 * c(COL13A1, ADAMTS14, EIF4EBP2, C10orf35, TYSND1, TBATA, TSPAN15, PALD1, HK1, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, H2AFY2, PRF1, SAR1A, NPFFR1, TACR2, AIFM2, SGPL1) 0.403000079906346 63 0.0494834143418871 1.08678756168233 1905 0.413998192122479 3 2 1 -6.87179228042192 LTS-038 chr10 72643671 73538062 894392 * c(UNC5B, C10orf105, PCBD1, SLC29A3, CDH23, C10orf54, UNC5B-AS1) 0.414042992041342 19 0.0483102183081639 1.22237917296964 730 0.344202297794395 5 3 2 -6.98291802970296 LTS-038 chr10 73538063 73538985 923 * CDH23 NA 0 NA 0.737 1 NA NA NA NA NA LTS-038 chr10 73538986 76994457 3455472 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, ADK, SAMD8, USP54, FUT11, OIT3, ZSWIM8, DNAJC9, KAT6B, NUDT13, AP3M1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf55, DNAJC9-AS1, P4HA1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, DNAJB12, PPP3CB, PSAP, MYOZ1, CDH23, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, NDST2, MCU, CHST3, SEC24C, SPOCK2) 0.427227057186827 103 0.0695247745047834 1.02287028307289 3914 0.31440844511657 3 2 1 -7.01793585622069 LTS-038 chr10 76994458 76994651 194 * COMTD1 NA 0 NA 2.003 1 NA NA NA NA NA LTS-038 chr10 76994652 77168683 174032 * c(ZNF503-AS2, COMTD1, ZNF503-AS1, ZNF503) NA 0 NA 1.57429960687234 129 0.551385626519908 5 NA NA -5.76447080314351 LTS-038 chr10 77168684 77191160 22477 * ZNF503-AS2 NA 0 NA 1.12 1 NA NA NA NA NA LTS-038 chr10 77191161 81272338 4081178 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.418217348577914 15 0.0371957498852195 1.16785866775122 1294 0.341681967430253 4 2 2 -7.26474713658183 LTS-038 chr10 81272339 81272474 136 * EIF5AL1 NA 0 NA 0.456 1 NA NA NA NA NA LTS-038 chr10 81272475 81275701 3227 * EIF5AL1 NA 0 NA 0.692057949953319 70 0.294727520931119 2 NA NA -5.7648679559144 LTS-038 chr10 81275702 86019280 4743579 * c(BMS1P21, NRG3, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, LRIT1, GHITM, ANXA11, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00857, RGR, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P, CDHR1) 0.410199858705304 66 0.0482951710124681 0.950589934331744 1633 0.307818663199157 3 2 1 -7.25121593138645 LTS-038 chr10 86019281 86131059 111779 * c(LINC00858, CCSER2) 0.339 1 NA 0.947913316899383 15 0.521877854711325 3 3 0 -5.76700051602529 LTS-038 chr10 86131060 90733509 4602450 * c(KLLN, GRID1-AS1, MIR4678, ADIRF, LDB3, ANKRD22, AGAP11, LIPJ, CFL1P1, WAPL, GLUD1, GRID1, LIPM, FAS, LINC00863, MIR346, CCSER2, FAM35A, RNLS, PTEN, STAMBPL1, ACTA2, FAM25A, LIPK, LIPN, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, LIPF, PAPSS2, OPN4, MINPP1) 0.365096825418529 53 0.0607091976255866 0.980271779013477 2295 0.330053573393891 3 2 1 -6.88499336982362 LTS-038 chr10 90733510 90733828 319 * c(FAS, STAMBPL1, ACTA2) NA 0 NA 1.102 1 NA NA NA NA NA LTS-038 chr10 90733829 95241847 4508019 * c(HECTD2-AS1, FAS-AS1, MARK2P9, MIR4679-1, MIR4679-2, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CYP26A1, CPEB3, IFIT5, MYOF, ANKRD1, FLJ37201, HHEX, HTR7, CYP26C1, IDE, IFIT2, IFIT1, IFIT3, FAS, KIF11, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, EXOC6, MARCH5, PPP1R3C, STAMBPL1, ACTA2, LINC00865, TNKS2, PCGF5, CH25H, BTAF1, KIF20B) 0.368796273698416 41 0.062814428589492 1.06898384257785 3311 0.531449609385685 3 2 1 -6.75336321229122 LTS-038 chr10 95241848 102588790 7346943 * c(C10orf131, PLCE1-AS1, DNMBP-AS1, FRAT1, MIR1287, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, SORBS1, ERLIN1, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, ABCC2, COX15, CPN1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, NKX2-3, SLC35G1, DNTT, RRP12, TBC1D12, DNMBP, FRAT2, SEC31B, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, R3HCC1L, GOT1, BLOC1S2, BLNK, HELLS, HPS1, FFAR4, CC2D2B, GOLGA7B, NA NA NA NA NA NA NA NA NA LTS-038 C10orf62, NDUFB8, PAX2, EXOSC1, CUTC, PLCE1, PDE6C, PGAM1, CCNJ, CRTAC1, CEP55, CWF19L1, PI4K2A, HIF1AN, TM9SF3, ENTPD7, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NOC3L, SLIT1, SNORA12, TLL2, ENTPD1-AS1, WNT8B, UBTD1, SLC25A28, MARVELD1, LOXL4, ZDHHC16, LCOR, PYROXD2, ARHGAP19, OLMALINC, PKD2L1, PDLIM1, LGI1, OPALIN, ENTPD1, ZNF518A) 0.348682555478229 208 0.0569084062668036 0.932329566876802 8087 0.29225134751997 3 2 1 -7.55968664268498 LTS-038 NA NA NA NA LTS-038 chr10 102588791 104913176 2324386 * c(TLX1NB, KCNIP2-AS1, MIR3158-1, MIR3158-2, RPARP-AS1, BORCS7-ASMT, ACTR1A, NPM3, LBX1, MGEA5, SFXN2, BORCS7, CYP17A1, FGF8, NT5C2, PPRC1, DPCD, POLL, KCNIP2, TLX1, LBX1-AS1, ARL3, NFKB2, PAX2, SUFU, PITX3, CNNM2, WBP1L, SLF2, PSD, C10orf2, AS3MT, MIR146B, SEMA4G, FBXW4, MIR608, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PDZD7, TRIM8, KAZALD1, SFXN3, ELOVL3, LZTS2, MRPL43, GBF1, LDB1, BTRC, NA NA NA NA NA NA NA NA NA LTS-038 NOLC1) 0.37237218168308 76 0.0627517973461752 1.05830523358989 3914 0.362178820779927 3 2 1 -6.74136554707147 LTS-038 NA NA NA NA LTS-038 chr10 104913177 104934563 21387 * NT5C2 NA 0 NA 0.699 1 NA NA NA NA NA LTS-038 chr10 104934564 105086478 151915 * c(NT5C2, RPEL1, PCGF6, INA) 0.437125556532864 2 0.00777817459305207 0.723768829853722 141 0.300217021806511 2 1 1 -7.28842056177179 LTS-038 chr10 105086479 105093593 7115 * PCGF6 NA 0 NA 1.528 1 NA NA NA NA NA LTS-038 chr10 105093594 106118159 1024566 * c(MIR936, MIR1307, SH3PXD2A-AS1, MIR4482, GSTO2, SFR1, CALHM3, COL17A1, CFAP58, PDCD11, CALHM1, CALHM2, TAF5, MIR609, OBFC1, CFAP43, PCGF6, USMG5, ITPRIP, NEURL1, GSTO1, SH3PXD2A, SLK) 0.360246748625284 45 0.0744377714482494 1.03000835718979 1880 0.356154479612001 3 2 1 -6.77474035388782 LTS-038 chr10 106118160 106118258 99 * CFAP58 NA 0 NA 0.983 1 NA NA NA NA NA LTS-038 chr10 106118259 106207451 89193 * CFAP58 0.333 1 NA 0.921082233811038 79 0.313821608994648 3 3 0 -5.77376346025033 LTS-038 chr10 106207452 106924208 716757 * c(CFAP58, SORCS3) 0.241 1 NA 0.898813263502342 111 0.452971150726692 2 2 0 -5.79348366701821 LTS-038 chr10 106924209 111625055 4700847 * c(SORCS1, SORCS3, XPNPEP1) 0.318005815621628 10 0.168288805992027 0.866214226125483 305 0.278171027490183 2 1 1 -7.28683952180112 LTS-038 chr10 111625056 111628335 3280 * XPNPEP1 NA 0 NA 1.336 1 NA NA NA NA NA LTS-038 chr10 111628336 120096015 8467680 * c(MIR2110, MIR4295, MIR3663, ADD3-AS1, MIR4680, MIR4483, SMNDC1, VAX1, PDZD8, PNLIPRP3, ADD3, TRUB1, VTI1A, C10orf82, ADRA2A, ADRB1, DUSP5, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, ATRNL1, GFRA1, PDCD4, RBM20, PDCD4-AS1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, MXI1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, FAM204A, ZDHHC6, RPL13AP6, SLC18A2, NA NA NA NA NA NA NA NA NA LTS-038 TCF7L2, TECTB, XPNPEP1, PLEKHS1, SHOC2, CASP7, AFAP1L2, SMC3, BBIP1, DCLRE1A) 0.275965056968914 105 0.0668386294065968 1.31937392698411 5746 0.472366017710586 4 3 1 -6.86155177398914 LTS-038 NA NA NA NA LTS-038 chr10 120096016 120352963 256948 * c(PRLHR, FAM204A) NA 0 NA 0.808 1 NA NA NA NA NA LTS-038 chr10 120352964 122610657 2257694 * c(MIR4682, MIR4681, PRDX3, SEC23IP, SFXN4, CACUL1, PLPP4, INPP5F, WDR11-AS1, PRLHR, GRK5, NANOS1, RGS10, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.268812221052565 23 0.0413273828008738 1.18595923160953 1439 0.972372476193858 5 4 1 -6.88367404358479 LTS-038 chr10 122610658 122610720 63 * c(WDR11-AS1, WDR11) NA 0 NA 1.778 1 NA NA NA NA NA LTS-038 chr10 122610721 123659527 1048807 * c(ATE1, FGFR2, WDR11) 0.291004637753481 14 0.0476053487621846 1.43631841876457 435 0.487311180740094 4 3 1 -6.8232502948669 LTS-038 chr10 123659528 123661894 2367 * ATE1 NA 0 NA 0.975 1 NA NA NA NA NA LTS-038 chr10 123661895 124691567 1029673 * c(MIR3941, FAM24B-CUZD1, TACC2, ATE1, BTBD16, FAM24A, DMBT1, FAM24B, DMBT1P1, ARMS2, C10orf120, LOC399815, CUZD1, NSMCE4A, HTRA1, PLEKHA1, C10orf88) 0.271551469257706 25 0.0412879320544555 1.12551143707125 1025 0.353165276267217 4 3 1 -7.24291689524314 LTS-038 chr10 124691568 127829243 3137676 * c(TEX36-AS1, MIR4296, MIR4484, FANK1-AS1, PSTK, MMP21, CPXM2, CTBP2, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, TEX36, NKX1-2, METTL10, FLJ37035, OAT, CHST15, ZRANB1, DHX32, BCCIP, LHPP, IKZF5, UROS, C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.282094226911618 63 0.0778717518014243 1.31053602410761 2458 0.497993225424226 4 3 1 -6.7928102653154 LTS-038 chr10 127829244 127843722 14479 * ADAM12 NA 0 NA 1.109 1 NA NA NA NA NA LTS-038 chr10 127843723 129917701 2073979 * c(LINC00601, C10orf90, CLRN3, DOCK1, FOXI2, MKI67, PTPRE, NPS, FAM196A, ADAM12) 0.27271163770587 34 0.0522805744710516 1.11683480219115 1136 0.441947823460538 4 3 1 -7.12304072244584 LTS-038 chr10 129917702 129921172 3471 * MKI67 NA 0 NA 1.409 1 NA NA NA NA NA LTS-038 chr10 129921173 134691597 4770425 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, MKI67, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.220712843365064 41 0.0637048836049635 1.37808888858514 1370 0.538462094665924 5 4 1 -7.06090135877919 LTS-038 chr10 134691598 134692910 1313 * CFAP46 NA 0 NA 0.926 1 NA NA NA NA NA LTS-038 chr10 134692911 134756359 63449 * CFAP46 NA 0 NA 0.71427936500428 173 0.1790499019494 2 NA NA -5.77919980446468 LTS-038 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.913 1 NA NA NA NA NA LTS-038 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.27982840246123 70 0.0418791542545525 1.18890250437326 1441 0.436127603152553 4 3 1 -6.98616193002744 LTS-038 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.687 1 NA NA NA NA NA LTS-038 chr11 193025 193096 72 * SCGB1C1 0.382 1 NA 0.433 1 NA NA NA NA NA LTS-038 chr11 193097 1010974 817878 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, AP2A2, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.247287836828294 124 0.0632361659203357 0.549321225800737 2959 0.198477878581202 1 1 0 -6.81015883529578 LTS-038 chr11 1010975 1011025 51 * AP2A2 NA 0 NA 0.341 1 NA NA NA NA NA LTS-038 chr11 1011026 1277451 266426 * c(AP2A2, MUC2, MUC6, MUC5B) 0.319614917011691 110 0.0943979761342824 0.470098204083119 1039 0.20474183730818 1 1 0 -6.98041321638568 LTS-038 chr11 1277452 4185675 2908224 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, MIR4687, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, TOLLIP-AS1, PGAP2, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, RHOG, IFITM10, LSP1, ART1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, NUP98, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, CHRNA10, MRPL23, MIR483, NA NA NA NA NA NA NA NA NA LTS-038 RRM1, TSSC2, SNORA54, STIM1, TH, TNNI2, TNNT3, TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.236605330076019 121 0.0664114792261304 0.551809711300096 3363 0.191084782963938 1 1 0 -6.88516776846834 LTS-038 NA NA NA NA LTS-038 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.388 1 NA NA NA NA NA LTS-038 chr11 4229252 5624652 1395401 * c(TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR51T1, OR51A4, OR51A2, TRIM6-TRIM34, UBQLN3, TRIM68, MMP26, TRIM21, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2) 0.275173326318641 102 0.0696279710919183 0.43198491143858 1687 0.272113512537632 1 1 0 -7.30916535789219 LTS-038 chr11 5624653 5624656 4 * c(TRIM6, HBG2, TRIM6-TRIM34) NA 0 NA 0.478 1 NA NA NA NA NA LTS-038 chr11 5624657 5809283 184627 * c(TRIM22, TRIM6, HBG2, OR56B1, OR52N4, OR52N5, TRIM6-TRIM34, TRIM34, OR52N1, TRIM5) 0.290656254023576 14 0.0726081232400312 0.517505495592908 412 0.214040865252336 1 1 0 -6.78832722926203 LTS-038 chr11 5809284 6221527 412244 * c(TRIM22, OR52W1, OR56A4, OR56A1, OR56B4, OR52B2, OR52L1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR52N1, TRIM5) 0.262978930944169 34 0.0567643281322575 0.401722300886713 403 0.150390475307267 1 1 0 -7.63798210262158 LTS-038 chr11 6221528 6226713 5186 * character(0) NA 0 NA 0.588 1 NA NA NA NA NA LTS-038 chr11 6226714 6565781 339068 * c(TRIM3, PRKCDBP, CNGA4, DNHD1, C11orf42, ARFIP2, TIMM10B, APBB1, HPX, SMPD1, FAM160A2, CCKBR) 0.238441199280465 30 0.059582850653137 0.548135425305234 911 0.445049838057657 1 1 0 -6.89758293943789 LTS-038 chr11 6565782 6565880 99 * DNHD1 NA 0 NA 0.499 1 NA NA NA NA NA LTS-038 chr11 6565881 6593282 27402 * DNHD1 NA 0 NA 0.437309275920315 275 0.095039757266005 1 NA NA -5.85440381196872 LTS-038 chr11 6593283 6616211 22929 * character(0) NA 0 NA 0.853 1 NA NA NA NA NA LTS-038 chr11 6616212 6735805 119594 * c(TPP1, RRP8, ILK, GVINP1, MRPL17, TAF10, DCHS1) 0.282002972901882 23 0.0791295280754203 0.5832281522141 705 0.171321784852901 1 1 0 -6.75659452604753 LTS-038 chr11 6735806 6735869 64 * GVINP1 0.219 1 NA 0.29 1 NA NA NA NA NA LTS-038 chr11 6735870 6977980 242111 * c(OR2D3, OR2D2, OR10A5, OR2AG1, OR10A4, OR2AG2, OR10A2, GVINP1, ZNF215, OR6A2) 0.28052247380904 32 0.0553992019128493 0.387503398546994 380 0.138018965466692 1 1 0 -7.54707287117572 LTS-038 chr11 6977981 8707481 1729501 * c(OR5P2, OR5P3, SYT9, OR5E1P, OR10A3, RBMXL2, OLFML1, LOC283299, NLRP10, NLRP14, OVCH2, OR10A6, LMO1, CYB5R2, RPL27A, SNORA3A, STK33, SNORA3B, TUB, ZNF214, ZNF215, RIC3, PPFIBP2, EIF3F, TRIM66) 0.261719818371098 90 0.0641762019278381 0.507325618506178 1913 0.200215367981296 1 1 0 -6.88732102251151 LTS-038 chr11 8707482 8707595 114 * RPL27A NA 0 NA 0.604 1 NA NA NA NA NA LTS-038 chr11 8707596 8933122 225527 * c(AKIP1, RPL27A, ST5) NA 0 NA 0.679750711282414 256 0.208246460576223 2 NA NA -5.84450056672068 LTS-038 chr11 8933123 9009796 76674 * c(TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3) 0.254193752838284 10 0.070247894393118 0.458910757150626 286 0.172221847133593 1 1 0 -6.81111435016536 LTS-038 chr11 9009797 9025304 15508 * NRIP3 NA 0 NA 0.681 1 NA NA NA NA NA LTS-038 chr11 9025305 10828361 1803057 * c(MRVI1-AS1, MTRNR2L8, MIR5691, MRVI1, IPO7, LYVE1, ADM, EIF4G2, SWAP70, DENND5A, AMPD3, KRT8P41, SBF2-AS1, TMEM41B, LOC440028, RNF141, NRIP3, SCUBE2, LOC644656, SNORA23, SNORD97, WEE1, ZNF143, SBF2, CTR9) 0.250887344937356 38 0.0538432541463617 0.578610835672681 2054 0.220469189164856 1 1 0 -6.87717345827191 LTS-038 chr11 10828362 10876214 47853 * c(EIF4G2, ZBED5) NA 0 NA 0.668021240359863 57 0.164641604005256 2 NA NA -5.79804198758458 LTS-038 chr11 10876215 10876219 5 * ZBED5 NA 0 NA 1.018 1 NA NA NA NA NA LTS-038 chr11 10876220 11863080 986861 * c(MIR4299, CSNK2A3, GALNT18, USP47, ZBED5, ZBED5-AS1) 0.465 1 NA 0.850190096440307 109 0.282407149635305 2 2 0 -5.79322328887566 LTS-038 chr11 11863081 17108428 5245348 * c(LINC00958, SPON1, OR7E14P, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, DKK3, INSC, ARNTL, PDE3B, PIK3C2A, USP47, SOX6, PARVA, PSMA1, PTH, RPS13, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10, MICALCL, MICAL2) 0.456166618460005 44 0.0323025061372707 0.8570021782801 2540 0.295964862648109 2 1 1 -6.97835126354473 LTS-038 chr11 17108429 19247464 2139036 * c(SPTY2D1-AS1, SAA2-SAA4, USH1C, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, SERGEF, IGSF22, GTF2H1, OTOG, NCR3LG1, KCNC1, KCNJ11, LDHA, LDHC, MYOD1, NUCB2, LOC494141, PIK3C2A, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, ABCC8, TPH1, TSG101, E2F8, CSRP3, PTPN5) 0.45257423518859 80 0.0461015321418148 0.738154538096994 3271 0.348394596315523 2 1 1 -6.81468613174481 LTS-038 chr11 19247465 19250965 3501 * E2F8 NA 0 NA 1.192 1 NA NA NA NA NA LTS-038 chr11 19250966 20515544 1264579 * c(LOC100126784, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, DBX1, NAV2-AS4, E2F8, NAV2) 0.421856746992455 12 0.134202357383441 0.903788886985287 624 0.278328229845138 2 1 1 -6.89663534633463 LTS-038 chr11 20515545 22401029 1885485 * c(PRMT3, ANO5, NELL1, SLC17A6, SLC6A5) 0.437715354384174 18 0.110623972983675 0.736544891475443 642 0.228141365366856 2 1 1 -6.87501830493577 LTS-038 chr11 22401030 22644108 243079 * c(FANCF, SLC17A6) NA 0 NA 1.399 1 NA NA NA NA NA LTS-038 chr11 22644109 22881002 236894 * c(CCDC179, FANCF, SVIP, GAS2) 0.402789428231315 5 0.0300333148353624 1.13470654803329 231 0.289034525573436 5 3 2 -6.99517764290395 LTS-038 chr11 22881003 25098938 2217936 * c(CCDC179, LUZP2) 0.295 1 NA 1.11576093051797 59 0.362417460322297 3 3 0 -5.80119738259653 LTS-038 chr11 25098939 32861801 7762863 * c(DCDC5, LINC00678, EIF3M, DNAJC24, ARL14EP, MUC15, SLC5A12, METTL15, IMMP1L, FSHB, ELP4, LUZP2, DCDC1, KCNA4, FIBIN, DKFZp686K1684, CCDC73, BDNF-AS, PAX6, WT1-AS, LIN7C, LGR4, RCN1, BDNF, ANO3, MIR610, MPPED2, WT1, PRRG4, KIF18A, BBOX1, CCDC34) 0.364673098810354 94 0.0807728313604008 1.11271795457959 2981 0.441730939122581 3 2 1 -6.83163924742439 LTS-038 chr11 32861802 32874779 12978 * PRRG4 NA 0 NA 0.673 1 NA NA NA NA NA LTS-038 chr11 32874780 33055206 180427 * c(PRRG4, QSER1, DEPDC7) 0.366892876672647 3 0.0858215202226885 0.975562243268982 353 0.333990300210677 3 2 1 -6.75123049671067 LTS-038 chr11 33055207 33065394 10188 * TCP11L1 0.37 1 NA 0.862277154695872 5 0.281540760814487 2 2 0 -5.76486212434864 LTS-038 chr11 33065395 46742081 13676687 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, MIR3973, MIR4688, MIR1343, HIPK3, CHRM4, C11orf74, LARGE2, CRY2, LDLRAD3, C11orf94, CSTF3, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, HARBI1, LINC00294, COMMD9, CSTF3-AS1, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LMO2, MIR129-2, CAPRIN1, MDK, APIP, HSD17B12, PHF21A, TRIM44, NA NA NA NA NA NA NA NA NA LTS-038 NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, SYT13, LRRC4C, RAG1, RAG2, ALX4, SLC1A2, TRAF6, SEC14L1P1, ZNF408, PRR5L, PDHX, ACCS, CAT, DGKZ, CHST1, API5, TSPAN18, CREB3L1, PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13) 0.380337453278728 119 0.0568166816028588 1.0506139092314 6162 0.336094889997853 3 2 1 -6.73316655532879 LTS-038 NA NA NA NA LTS-038 chr11 46742082 47603399 861318 * c(LRP4-AS1, NR1H3, MIR5582, CELF1, PTPMT1, DDB2, F2, PACSIN3, LRP4, MYBPC3, NDUFS3, ACP2, KBTBD4, PSMC3, RAPSN, SPI1, SNORD67, C11orf49, ARFGAP2, MADD, SLC39A13, CKAP5) 0.389772546219019 35 0.0485921631472373 0.976564123472703 1919 0.314143939273965 3 2 1 -6.78737130837237 LTS-038 chr11 47603400 47603666 267 * NDUFS3 NA 0 NA 0.724 1 NA NA NA NA NA LTS-038 chr11 47603667 48166267 562601 * c(C1QTNF4, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, PTPRJ, AGBL2) 0.386440565928969 19 0.0549472900001681 0.868474719962065 767 0.2804696177317 3 2 1 -6.89381223404568 LTS-038 chr11 48166268 48188908 22641 * PTPRJ 0.333 1 NA 0.762539034882622 57 0.170855949966917 2 2 0 -5.76541006310736 LTS-038 chr11 48188909 48346419 157511 * c(OR4X2, OR4B1, OR4S1, OR4X1, PTPRJ) 0.37841255057548 4 0.0763909898700975 0.763156869690418 116 0.330372866787582 3 2 1 -6.82020029166163 LTS-038 chr11 48346420 48346423 4 * character(0) 0.372 1 NA 1.705 1 NA NA NA NA NA LTS-038 chr11 48346424 48388698 42275 * c(OR4C3, OR4C45) 0.345993641078827 108 0.0573919764263002 1.25377172117874 186 0.727030708051902 9 6 3 -6.76476212377835 LTS-038 chr11 48388699 48388716 18 * character(0) NA 0 NA 0.983 1 NA NA NA NA NA LTS-038 chr11 48388717 51526755 3138039 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.386578607602664 18 0.0657832894926256 0.893298329656205 462 0.465786265176704 3 2 1 -6.95931133161662 LTS-038 chr11 51526756 51527703 948 * character(0) NA 0 NA 0.840209243343998 5 0.0757377052728692 2 NA NA -5.76466412128115 LTS-038 chr11 55035776 55111584 75809 * c(TRIM51HP, TRIM48, OR4A16) 0.391 1 NA 0.607323939888376 23 0.255280888465647 1 1 0 -5.77200573783633 LTS-038 chr11 55111585 55340582 228998 * c(OR4C16, OR4C15, OR4A16, OR4A15) 0.415829115960091 5 0.0645886987018627 0.733362565553539 76 0.14517817244471 2 1 1 -6.89926683019886 LTS-038 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.39 1 NA NA NA NA NA LTS-038 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.288700635838469 67 0.062036985073105 0 NA NA -5.76855347299113 LTS-038 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.76 1 NA NA NA NA NA LTS-038 chr11 55432533 57068444 1635912 * c(OR5I1, OR8I2, APLNR, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, LRRC55, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, TRIM51, TNKS1BP1) 0.394079600987164 60 0.0500792902379263 0.823922003890741 1188 0.285991751975221 2 1 1 -7.3062818646583 LTS-038 chr11 57068445 57099294 30850 * c(SSRP1, TNKS1BP1) 0.371351649251196 3 0.0309892454463373 1.34187430265557 192 0.365329369451596 3 2 1 -6.7825145209609 LTS-038 chr11 57099295 57099647 353 * SSRP1 NA 0 NA 0.968 1 NA NA NA NA NA LTS-038 chr11 57099648 57574463 474816 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, P2RX3, TMX2, PRG2, BTBD18, SSRP1, SERPING1, SLC43A1, UBE2L6) 0.400831022439861 10 0.0454943219900389 1.02449905607984 1114 0.325988007187552 3 2 1 -6.86380677817767 LTS-038 chr11 57574464 57575618 1155 * c(TMX2-CTNND1, CTNND1) NA 0 NA 0.55 1 NA NA NA NA NA LTS-038 chr11 57575619 58318624 743006 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1, LPXN) 0.333606385855996 5 0.0896309098469942 0.77470425241373 498 0.252812259258509 3 2 1 -7.47152592488832 LTS-038 chr11 58318625 58393231 74607 * c(CNTF, ZFP91-CNTF, ZFP91, LPXN) 0.343058619911209 5 0.0209475535564419 1.15774302537034 230 0.352503064390091 9 6 3 -7.06778886260114 LTS-038 chr11 58393232 58476544 83313 * GLYAT NA 0 NA 0.863 1 NA NA NA NA NA LTS-038 chr11 58476545 60658531 2181987 * c(MIR3162, GLYAT, PTGDR2, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, ZP1, DTX4, MS4A6E, GIF, PRPF19, LOC283194, LINC00301, MS4A10, FAM111B, OR5AN1, OR4D10, OR4D9, OR10V1, OSBP, MS4A13, MS4A4A, MS4A12, MRPL16, MS4A7, FAM111A, MS4A6A, MS4A5, STX3, TCN1, CCDC86, OR10V2P, MS4A8, MS4A14, GLYATL1, MS4A1, MS4A3) 0.361208363915463 42 0.0848904465827696 0.897393125905106 2305 0.348923749999553 3 2 1 -7.01585136492425 LTS-038 chr11 60658532 60658644 113 * PRPF19 NA 0 NA 1.141 1 NA NA NA NA NA LTS-038 chr11 60658645 62752082 2093438 * c(MIR1908, HNRNPUL2-BSCL2, MIR4488, NXF1, TAF6L, SCGB1D2, SCGB1D1, CHRM1, RPLP0P2, DDB1, EEF1G, VWCE, CYB561A3, PPP1R32, LRRN4CL, HNRNPUL2, FEN1, GANAB, SNHG1, FTH1, EML3, TKFC, DKFZP434K028, B3GAT3, BSCL2, PRPF19, GNG3, TTC9C, INCENP, TMEM179B, LRRC10B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, TMEM216, SLC15A3, TMEM138, PGA5, POLR2G, WDR74, SDHAF2, TMEM132A, VPS37C, RAB3IL1, ROM1, PGA3, PGA4, NA NA NA NA NA NA NA NA NA LTS-038 TUT1, SLC3A2, STX5, SNORA57, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, METTL12, AHNAK, TMEM223, TMEM109, LBHD1, UQCC3, ZBTB3, CPSF7, ASRGL1, INTS5, SYT7, CD5, MTA2, CD6, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, FADS2) 0.364358583165145 95 0.0480264135052466 1.05819467433432 5339 0.345934662911875 3 2 1 -6.79264922214366 LTS-038 NA NA NA NA LTS-038 chr11 62752083 63233917 481835 * c(SLC22A9, HRASLS5, SLC22A24, SLC22A25, SLC22A10, SLC22A6, SLC22A8) 0.408468892747953 21 0.050517229498365 0.829624702515176 476 0.23770966479477 2 1 1 -7.03714517574886 LTS-038 chr11 63233918 63235835 1918 * HRASLS5 NA 0 NA 1.15 1 NA NA NA NA NA LTS-038 chr11 63235836 64851719 1615884 * c(NAALADL1, MIR1237, ARL2-SNX15, LOC100996455, RASGRP2, RTN3, EHD1, STIP1, PLA2G16, CDCA5, BATF2, SLC22A12, HRASLS5, COX8A, C11orf84, GPHA2, MARK2, ESRRA, FKBP2, ATG2A, FLRT1, PRDX5, TEX40, ATL3, PPP1R14B, MAJIN, CCDC88B, RCOR2, MACROD1, SAC3D1, DNAJC4, ARL2, MIR192, MIR194-2, MEN1, KCNK4, TRMT112, PLCB3, HRASLS2, PPP2R5B, CDC42BPG, OTUB1, SLC22A11, GPR137, BAD, PYGM, MAP4K2, RARRES3, C11orf95, VEGFB, NA NA NA NA NA NA NA NA NA LTS-038 SF1, ZFPL1, NAA40, FERMT3, TRPT1, NUDT22, LGALS12, RPS6KA4, NRXN2) 0.365545401410525 51 0.0810247601953001 1.01892198519104 4311 0.359066215454508 3 2 1 -6.75768638987398 LTS-038 NA NA NA NA LTS-038 chr11 64851720 64851915 196 * ZFPL1 NA 0 NA 2.093 1 NA NA NA NA NA LTS-038 chr11 64851916 65744597 892682 * c(TMEM262, MIR4489, MIR4690, KCNK7, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, CCDC85B, CTSW, FAU, TIGD3, FAM89B, POLA2, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, SLC25A45, NEAT1, EFEMP2, MALAT1, SPDYC, PCNX3, LTBP3, MAP3K11, SLC22A20, OVOL1, SCYL1, RELA, DPF2, SIPA1, TM7SF2, VPS51, MRPL49, ZNHIT2, ZFPL1, MUS81, FOSL1, CAPN1, C11orf68, FRMD8, RNASEH2C, SYVN1, SART1, AP5B1, FIBP) 0.379384328985827 55 0.0506362348800568 1.13322728308173 3301 0.339017134249947 3 2 1 -6.75981255036912 LTS-038 chr11 65744598 65744600 3 * SART1 NA 0 NA 0.888 1 NA NA NA NA NA LTS-038 chr11 65744601 66392879 648279 * c(RBM14-RBM4, DPP3, RBM14, YIF1A, SF3B2, B4GAT1, CATSPER1, CST6, PELI3, CNIH2, ZDHHC24, TMEM151A, BRMS1, NPAS4, SLC29A2, CCDC87, PACS1, CD248, BBS1, KLC2, MRPL11, RAB1B, EIF1AD, CTSF, BANF1, ACTN3, GAL3ST3, SART1, RIN1, CCS) 0.370457833115768 34 0.0470377877449166 1.01226921188779 2095 0.318906034202212 3 2 1 -6.76031103931397 LTS-038 chr11 66392880 66411654 18775 * c(RBM14-RBM4, RBM14, RBM4) NA 0 NA 1.46310911474957 96 0.403149080948101 5 NA NA -5.76465926349823 LTS-038 chr11 66411655 66999419 587765 * c(RBM14-RBM4, KDM2A, C11orf86, RHOD, PC, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, SYT12, RCE1) 0.384327341262137 6 0.0443910651670656 0.998530337933756 872 0.246934275822773 3 2 1 -6.75487516865473 LTS-038 chr11 66999420 67007450 8031 * KDM2A NA 0 NA 1.575 1 NA NA NA NA NA LTS-038 chr11 67007451 67809416 801966 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.366596704062279 34 0.0399342150664919 1.14932070056427 1701 0.347412262542083 3 2 1 -6.82717695070717 LTS-038 chr11 67809417 67810182 766 * TCIRG1 NA 0 NA 0.853 1 NA NA NA NA NA LTS-038 chr11 67810183 68854121 1043939 * c(TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, MRPL21, TPCN2, IGHMBP2, LRP5, GAL, KMT5B, C11orf24, PPP6R3, TESMIN) 0.386850330217725 32 0.0897846830729837 0.987844518128055 1349 0.322181509573452 3 2 1 -6.75965853250427 LTS-038 chr11 68854122 68854561 440 * TPCN2 NA 0 NA 1.622 1 NA NA NA NA NA LTS-038 chr11 68854562 69472165 617604 * c(TPCN2, ORAOV1, MYEOV, CCND1) NA 0 NA 1.40457400484331 166 0.445353443247264 4 NA NA -5.77515286278308 LTS-038 chr11 69472166 74562279 5090114 * c(KCNE3, LOC100129216, LOC100133315, MIR548K, MIR3165, MIR3664, MIR4696, MIR4692, IL18BP, SHANK2-AS1, POLD3, STARD10, ARAP1, XRRA1, DHCR7, CTTN, ORAOV1, SHANK2-AS3, LRTOMT, FGF3, FGF4, SHANK2, FAM168A, FOLR1, FOLR2, FOLR3, DEFB108B, RNF169, CHRDL2, ANAPC15, C2CD3, P4HA3, PGM2L1, ALG1L9P, INPPL1, DNAJB13, KRTAP5-9, KRTAP5-10, LIPT2, FLJ42102, PHOX2A, MIR139, KRTAP5-7, KRTAP5-11, NUMA1, P2RY2, P2RY6, COA4, NA NA NA NA NA NA NA NA NA LTS-038 PDE2A, PPME1, MRPL48, LAMTOR1, ANO1, NADSYN1, FAM86C1, RNF121, KRTAP5-8, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1, CLPB, RELT, PPFIA1, FADD, ATG16L2, ARHGEF17, FCHSD2, FGF19) 0.358019932038435 85 0.0555628117576871 1.09410049927727 5520 0.355972956610002 3 2 1 -6.86129555114399 LTS-038 NA NA NA NA LTS-038 chr11 74562280 82641317 8079038 * c(MIR708, KCTD21-AS1, MIR4300, TPBGL, NDUFC2-KCTD14, MIR5579, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, DDIAS, FAM181B, TSKU, TENM4, LRRC32, AQP11, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, PRCP, THAP12, EMSY, USP35, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UVRAG, WNT11, ALG8, NARS2, MOGAT2, GDPD5, DGAT2, SERPINH1, INTS4, NA NA NA NA NA NA NA NA NA LTS-038 SPCS2, GAB2) 0.380328018680898 17 0.0485218265016768 1.02069808251296 4442 0.320707718501617 3 2 1 -6.77153013163553 LTS-038 NA NA NA NA LTS-038 chr11 82641318 82642811 1494 * DDIAS NA 0 NA 0.489 1 NA NA NA NA NA LTS-038 chr11 82642812 82752690 109879 * c(SNORA70E, DDIAS, RAB30) 0.356892808601295 8 0.0172357601680758 0.805071502783013 315 0.258445493747323 6 4 2 -7.33959806727717 LTS-038 chr11 82752691 82868060 115370 * c(RAB30-AS1, RAB30) NA 0 NA 1.346 1 NA NA NA NA NA LTS-038 chr11 82868061 83167855 299795 * c(DLG2, ANKRD42, PCF11, CCDC90B) 0.367881152348522 10 0.0924303942314311 1.08654737500311 498 0.415444893472158 3 2 1 -6.74368980648791 LTS-038 chr11 83167856 85426225 2258370 * c(DLG2, CCDC89, SYTL2, TMEM126B, CREBZF, TMEM126A) 0.404051315811699 2 0.00282842712474619 0.852288928598439 619 0.268171212154853 5 3 2 -14.4692454571193 LTS-038 chr11 85426226 85428478 2253 * SYTL2 NA 0 NA 0.48 1 NA NA NA NA NA LTS-038 chr11 85428479 85469073 40595 * SYTL2 NA 0 NA 0.609575116025828 156 0.150577986933294 1 NA NA -5.77693344547709 LTS-038 chr11 85469074 94862844 9393771 * c(NAALAD2, MIR1304, LOC100506368, MIR4490, GRM5-AS1, CTSC, ME3, GPR83, PRSS23, SLC36A4, FAT3, TRIM64, PIWIL4, AMOTL1, DEUP1, FOLH1B, CCDC83, ENDOD1, RAB38, PANX1, FUT4, CHORDC1, C11orf54, GRM5, HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, SYTL2, ANKRD49, KDM4D, SMCO4, TRIM49, CCDC81, SCARNA9, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, NA NA NA NA NA NA NA NA NA LTS-038 TYR, TAF1D, PICALM, FZD4, CEP295, OR7E2P, EED, MED17) 0.378534364987147 59 0.0724164243489557 1.00939221178414 4601 0.38700922864186 3 2 1 -6.79200230526904 LTS-038 NA NA NA NA LTS-038 chr11 94862845 94862901 57 * ENDOD1 NA 0 NA 1.215 1 NA NA NA NA NA LTS-038 chr11 94862902 100922304 6059403 * c(MIR1260B, JRKL-AS1, FAM76B, SESN3, ARHGAP42, ENDOD1, PGR, CNTN5, CCDC82, TMEM133, MAML2, JRKL, MTMR2, CEP57) 0.389844653546595 37 0.0456995344335962 1.20245642794019 1602 0.487094870816511 3 2 1 -7.03168653311203 LTS-038 chr11 100922305 100933167 10863 * PGR NA 0 NA 0.959 1 NA NA NA NA NA LTS-038 chr11 100933168 102937063 2003896 * c(WTAPP1, MIR3920, LOC101054525, YAP1, TMEM123, ANGPTL5, BIRC2, BIRC3, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, PGR, CEP126, MMP27, TRPC6, DCUN1D5, C11orf70, MMP20) 0.377220613122496 37 0.0557467730250165 1.01005332218017 1655 0.371901578475143 3 2 1 -6.74728518006933 LTS-038 chr11 102937064 103720798 783735 * c(MIR4693, DYNC2H1, DCUN1D5) 0.403356415030548 9 0.0328625081885793 1.20571952331569 460 0.415266240480841 5 3 2 -6.97861841002494 LTS-038 chr11 103720799 103777941 57143 * PDGFD NA 0 NA 0.677 1 NA NA NA NA NA LTS-038 chr11 103777942 103779025 1084 * PDGFD 0.415119261371407 2 0.102530483272049 0.746156566951319 22 0.182954238121868 5 3 2 -6.74345181369412 LTS-038 chr11 103779026 103779704 679 * PDGFD 0.495 1 NA 0.761293501867297 15 0.103466212566505 2 2 0 -5.76449766369616 LTS-038 chr11 103779705 119534398 15754694 * c(LOC100131626, LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, CASP12, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4491, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, CARD16, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, FDX1, CEP164, EXPH5, PHLDB1, SIK2, SIK3, BACE1, CADM1, SLC37A4, ANKK1, NA NA NA NA NA NA NA NA NA LTS-038 RNF214, HINFP, REXO2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, GRIA4, GUCY1A2, H2AFX, HMBS, HSPB2, APOA1, HTR3A, APOA4, CCDC84, C11orf53, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, C11orf87, COLCA1, C11orf88, MIR34B, MIR34C, DDI1, MCAM, KMT2A, CARD17, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 VPS11, TEX12, TMPRSS4, IFT46, DSCAML1, ARHGAP20, USP28, PTS, NECTIN1, CARD18, RDX, AASDHPPT, RPS25, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, LOC643733, LOC643923, CLDN25, C11orf1, RPL23AP64, SLN, TAGLN, THY1, UPK2, ZBTB16, RNF26, NLRX1, ALG9, PDZD3, PDGFD, CUL5, TMPRSS5, CASP1, MFRP, CASP4, CASP5, BCO2, TMPRSS13, MSANTD4, BUD13, TMEM25, DIXDC1, ZC3H12C, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ALKBH8, ZW10, FDXACB1, UBE4A, C2CD2L) 0.448932339555067 240 0.0509929685857598 0.776297815039781 13757 0.347320830412497 2 1 1 -6.79967356450976 LTS-038 NA NA NA NA LTS-038 chr11 119534399 120317731 783333 * c(TMEM136, OAF, ARHGEF12, TRIM29, POU2F3, NECTIN1, LOC649133) 0.448492757318157 13 0.0406230324967348 0.914553881178485 607 0.308756763377564 2 1 1 -6.82681894401937 LTS-038 chr11 120317732 120319064 1333 * ARHGEF12 0.4 1 NA 0.811231161553734 7 0.248258889449051 2 2 0 -5.76441326613327 LTS-038 chr11 120319065 123756389 3437325 * c(MIR4493, TBCEL, ARHGEF12, GRIK4, HSPA8, TMEM225, LOC341056, BSX, OR6X1, OR6M1, MIR100HG, MIRLET7A2, MIR100, MIR125B1, BLID, SCN3B, CRTAM, GRAMD1B, SC5D, SORL1, TECTA, ZNF202, CLMP, C11orf63, UBASH3B) 0.41822470843688 53 0.0467644407351505 0.945600252897454 2337 0.521356095259156 2 1 1 -7.13084799407881 LTS-038 chr11 123756390 123777076 20687 * character(0) NA 0 NA 0.489 1 NA NA NA NA NA LTS-038 chr11 123777077 124490158 713082 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, OR8D4, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A) 0.433867636807893 29 0.049006358288587 0.731243778595025 692 0.305925421332304 2 1 1 -6.7986526032596 LTS-038 chr11 124490159 134856661 10366503 * c(LOC100128239, PATE3, MIR3167, SENCR, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, SPATA19, HEPACAM, IGSF9B, FLI1, NCAPD3, VSIG2, ACAD8, B3GAT1, KIRREL3-AS3, C11orf44, MIR4697HG, LOC283177, DCPS, ZBTB44, THYN1, DDX25, APLP2, STT3A, KCNJ1, KCNJ5, PATE2, PATE4, ST3GAL4-AS1, SNX19, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, NA NA NA NA NA NA NA NA NA LTS-038 SPA17, SIAE, ROBO4, FOXRED1, ACRV1, PRDM10, PKNOX2, TP53AIP1, HEPN1, ROBO3, ST3GAL4, SRPRA, ST14, FAM118B, MSANTD2, CCDC15, PUS3, JAM3, KIRREL3, RPUSD4, TBRG1, BARX2, GLB1L2, ESAM, EI24, FEZ1, ARHGAP32) 0.409970797268576 193 0.0606756009560819 0.978978235974059 6978 0.367238856577319 3 2 1 -7.10060550843019 LTS-038 NA NA NA NA LTS-038 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.908 1 NA NA NA NA NA LTS-038 chr12 90923 248202 157280 * c(LOC100288778, IQSEC3, LOC574538, FAM138D) 0.453 1 NA 0.955740169134319 49 0.344412075457712 3 3 0 -5.77148571178463 LTS-038 chr12 248203 498710 250508 * c(IQSEC3, LOC574538, KDM5A, SLC6A12, SLC6A13, CCDC77) 0.329333798061053 10 0.0533338541641236 1.11418346076439 631 0.377986939630632 4 3 1 -6.86432821065218 LTS-038 chr12 498711 518494 19784 * CCDC77 NA 0 NA 0.552 1 NA NA NA NA NA LTS-038 chr12 518495 6061665 5543171 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, AKAP3, RAD51AP1, TSPAN9, FBXL14, DCP1B, FGF6, FKBP4, FOXM1, ERC1, GALNT8, B4GALNT3, LOC283440, KCNA1, KCNA5, KCNA6, NDUFA9, NINJ2, NTF3, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, RAD52, WNK1, LRTM2, TEAD4, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, DYRK4, CCND2, CACNA2D4) 0.338999721363652 87 0.0854233009009154 0.959280984788645 4485 0.359183756478805 3 2 1 -7.06970496691855 LTS-038 chr12 6061666 6566753 505088 * c(LTBR, TAPBPL, PLEKHG6, SCNN1A, CD27-AS1, TNFRSF1A, VWF, CD9, CD27) 0.32877406993573 25 0.0543113861604237 1.21631848825017 815 0.340618320838439 4 3 1 -6.84235306992016 LTS-038 chr12 6566754 6566756 3 * TAPBPL NA 0 NA 0.939 1 NA NA NA NA NA LTS-038 chr12 6566757 6929637 362881 * c(CHD4, ZNF384, PIANP, IFFO1, GAPDH, LAG3, NOP2, COPS7A, ING4, MRPL51, TAPBPL, LPAR5, PTMS, SCARNA11, VAMP1, SCARNA10, MLF2, ACRBP, CD4, NCAPD2) 0.340225970579391 42 0.0450353842043091 1.01864902525531 1421 0.325437833035661 3 2 1 -7.1596687875652 LTS-038 chr12 6929638 6933787 4150 * c(GPR162, CD4) 0.437 1 NA 0.984453728602572 35 0.211473648953435 3 3 0 -5.76464359663195 LTS-038 chr12 6933788 7596744 662957 * c(LPCAT3, LRRC23, EMG1, P3H3, C12orf57, PHB2, DSTNP2, ATN1, ENO2, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, ACSM4, MIR141, MIR200C, C1RL, PTPN6, PEX5, SCARNA12, C1R, C1S, TPI1, USP5, CDCA3, RBP5, SPSB2, CLSTN3) 0.384107475664591 39 0.0442034463516785 1.02471904949176 1869 0.358461976279341 3 2 1 -6.74143277619902 LTS-038 chr12 7596745 8074018 477274 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, DPPA3, NANOGNB, SLC2A3, NANOG, CD163, GDF3) 0.453460835636995 10 0.0227276141388498 0.544588172474295 500 0.204455549152275 2 1 1 -7.68375227159805 LTS-038 chr12 8074019 8074055 37 * SLC2A3 0.232 1 NA 0.884 1 NA NA NA NA NA LTS-038 chr12 8074056 9090520 1016465 * c(A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.447298524345371 15 0.0454697178141149 0.669330005204672 1113 0.224937840422951 2 1 1 -7.08939238920722 LTS-038 chr12 9090521 9093789 3269 * c(PHC1, M6PR) NA 0 NA 0.391972747092118 52 0.191317674271584 0 NA NA -5.76868025888575 LTS-038 chr12 9093790 11183451 2089662 * c(KLRF2, LINC00987, KLRC4-KLRK1, PRH1-PRR4, KLRG1, KLRA1P, PRR4, TMEM52B, A2M-AS1, CLEC12A, CLECL1, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, TAS2R31, TAS2R19, TAS2R20, TAS2R50, CLEC9A, CLEC2D, A2MP1, LOC374443, KLRB1, KLRC1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, M6PR, DDX12P, OLR1, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, CLEC1B, CLEC1A, KLRF1, MAGOHB, STYK1, PRB4, PRH1, PRH2, PZP, LOC642846, NA NA NA NA NA NA NA NA NA LTS-038 CLEC7A, KLRC4, YBX3, CD69, CLEC2B) 0.412771576158276 101 0.0832623243337906 0.670637531590762 2646 0.255032418281261 2 1 1 -7.35872435146567 LTS-038 NA NA NA NA LTS-038 chr12 11183452 11183642 191 * c(PRH1-PRR4, TAS2R31, PRB4) 0.257 1 NA 0.81418341185552 5 0.342846467095696 2 2 0 -5.76441049116008 LTS-038 chr12 11183643 11214137 30495 * c(PRH1-PRR4, TAS2R31, TAS2R46, PRB4) 0.175606112562564 11 0.0229120849414373 0.849775440430256 32 0.369217956217663 2 2 0 -6.83293818370831 LTS-038 chr12 11214138 11214360 223 * c(PRH1-PRR4, TAS2R46, PRB4) 0.49 1 NA 0.587272698486404 3 0.142899731746891 1 1 0 -5.76444284321359 LTS-038 chr12 11214361 11548488 334128 * c(SMIM10L1, PRH1-PRR4, TAS2R43, TAS2R46, TAS2R30, TAS2R42, PRB1, PRB3, PRB4, PRB2) 0.390216015145308 18 0.0880389285553639 0.60957824767906 181 0.222073033546086 2 1 1 -7.23906054185395 LTS-038 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 1.598 1 NA NA NA NA NA LTS-038 chr12 11802940 17142320 5339381 * c(LOC100506314, CDKN1B, STRAP, BORCS5, HIST4H4, ERP27, CREBL2, C12orf60, EMP1, EPS8, ETV6, LINC01559, GPR19, GRIN2B, GUCY2C, RPL13AP20, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, DERA, DDX47, PDE6H, WBP11, MANSC1, GPRC5D, ATF7IP, H2AFJ, LMO3, FAM234B, PTPRO, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, PLBD1, DUSP16, APOLD1, GSG1, RERG, GPRC5A, HTR7P1) 0.439187138140916 55 0.0722429589499566 0.786015981868963 3407 0.27517476735097 2 1 1 -6.74763011512042 LTS-038 chr12 17142321 17142401 81 * SKP1P2 NA 0 NA 1.157 1 NA NA NA NA NA LTS-038 chr12 17142402 19354550 2212149 * c(MIR3974, PIK3C2G, PLEKHA5, SKP1P2, RERGL, PLCZ1, CAPZA3) 0.401 1 NA 1.01499072234673 364 0.357423628981061 3 3 0 -5.77654824585751 LTS-038 chr12 19354551 19354783 233 * PLEKHA5 0.369 1 NA 1.07849525229696 5 0.119129341473879 3 3 0 -5.76441700830468 LTS-038 chr12 19354784 33592590 14237807 * c(MIR920, MANSC4, LINC00941, MIR4302, LOC100506393, RASSF8-AS1, DDX11-AS1, DNM1L, ABCC9, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, SLCO1B1, RASSF8, FGD4, AEBP2, LINC00477, ETFRF1, LMNTD1, DENND5B, DDX11, AMN1, C12orf77, STK38L, ETFBKMT, FGFR1OP2, SLCO1B3, GYS2, IAPP, SLCO1B7, SMCO2, OVCH1, SYT10, ITPR2, KCNJ8, KRAS, REP15, LDHB, LRMP, H3F3C, TSPAN11, GOLT1B, YARS2, ERGIC2, PDE3A, TM7SF3, PKP2, SLCO1C1, NA NA NA NA NA NA NA NA NA LTS-038 PLEKHA5, KIAA1551, CASC1, CCDC91, ETNK1, FAR2, ASUN, CMAS, ARNTL2, PTHLH, KLHL42, FAM60A, BCAT1, RECQL, MRPS35, BICD1, ST8SIA1, SLCO1A2, CAPRIN2, SOX5, C12orf71, BHLHE41, FLJ13224, PYROXD1, SPX, SSPN, TMTC1, PPFIBP1, MED21, C2CD5) 0.372305796147679 137 0.0926835870931031 1.08239278966076 8007 0.593282374873599 3 2 1 -6.75851945714461 LTS-038 NA NA NA NA LTS-038 chr12 33592591 34182671 590081 * c(SYT10, ALG10) NA 0 NA 1.05548599066411 71 0.35838836998772 3 NA NA -5.76447650405805 LTS-038 chr12 38710341 40799969 2089629 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.318 1 NA 0.973776163975663 1155 0.311127716185626 3 3 0 -5.83766834476411 LTS-038 chr12 40799970 45568202 4768233 * c(YAF2, CNTN1, PRICKLE1, GXYLT1, PDZRN4, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, TWF1, ADAMTS20, PUS7L, RACGAP1P, TMEM117, ZCRB1) 0.360015220512804 60 0.099997168038996 0.973623904621606 2347 0.372377178366941 3 2 1 -6.87205471622333 LTS-038 chr12 45568203 45609764 41562 * c(PLEKHA8P1, RNY5) NA 0 NA 2.545 1 NA NA NA NA NA LTS-038 chr12 45609765 46367944 758180 * c(ANO6, ARID2, LINC00938, PLEKHA8P1, SCAF11) 0.370477462534329 3 0.0765266837993999 1.12133805915112 648 0.423633812656234 3 2 1 -6.75218538862849 LTS-038 chr12 46367945 46582540 214596 * c(SLC38A1, SCAF11) 0.486 1 NA 1.19202861770899 60 0.548357927770861 4 4 0 -5.76773790518906 LTS-038 chr12 46582541 47182421 599881 * c(SLC38A2, SLC38A4, SLC38A1) 0.458919570700603 6 0.0240638040772166 1.13940435478518 317 0.308500675482486 4 2 2 -6.99674806148272 LTS-038 chr12 47182422 47186705 4284 * SLC38A4 NA 0 NA 0.895 1 NA NA NA NA NA LTS-038 chr12 47186706 48525972 1339267 * c(PCED1B-AS1, MIR4698, RAPGEF3, COL2A1, SENP1, AMIGO2, HDAC7, PFKM, SLC38A4, SLC48A1, VDR, TMEM106C, RPAP3, ENDOU, PCED1B) 0.459646221828865 48 0.0357764681565811 0.852172632428101 1487 0.247773127937098 2 1 1 -6.88778790665998 LTS-038 chr12 48525973 48526699 727 * PFKM NA 0 NA 0.692 1 NA NA NA NA NA LTS-038 chr12 48526700 49411005 884306 * c(MIR4701, ADCY6, C12orf54, ZNF641, OR10AD1, ASB8, DDN, ANP32D, LINC00935, RND1, H1FNT, OR8S1, ARF3, CCDC184, LALBA, FKBP11, PFKM, KANSL2, PRKAG1, SNORA2A, SNORA2B, SNORA2C, WNT1, WNT10B, CACNB3, CCDC65, CCNT1, DDX23) 0.44592499982301 47 0.0748954312653438 0.718900321438175 1790 0.232427951770217 2 1 1 -6.84009562442225 LTS-038 chr12 49411006 49411086 81 * PRKAG1 NA 0 NA 1.402 1 NA NA NA NA NA LTS-038 chr12 49411087 52215460 2804374 * c(TROAP, BCDIN3D-AS1, MIR1293, LOC100335030, TUBA1B, MCRS1, GALNT6, LARP4, FAM186A, RHEBL1, BCDIN3D, CELA1, FAIM2, KCNH3, PRPF40B, METTL7A, LETMD1, GPD1, LOC283332, TMPRSS12, RACGAP1, C1QL4, AQP2, AQP5, AQP6, FIGNL2, ASIC1, ATF1, SLC11A2, DHH, BIN2, LIMA1, POU6F1, PRKAG1, LMBR1L, PRPH, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SPATS2, SMARCD1, TMBIM6, TFCP2, TUBA1A, DNAJC22, KMT2D, CSRNP2, FAM186B, TUBA1C, NA NA NA NA NA NA NA NA NA LTS-038 COX14, FMNL3, CERS5, SLC4A8, DAZAP2) 0.444451143460425 98 0.0742429212871202 0.788232600318741 5444 1.11460806466982 2 1 1 -6.73328766356659 LTS-038 NA NA NA NA LTS-038 chr12 52215461 52215716 256 * FIGNL2 NA 0 NA 0.941 1 NA NA NA NA NA LTS-038 chr12 52215717 54859037 2643321 * c(HOTAIR, LOC100240734, LOC100240735, MIR3198-2, LOC100652999, HOXC13-AS, ATF7, KRT71, SP7, GTSF1, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, COPZ1, TNS2, CBX5, SMUG1, ZNF385A, AMHR2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, HNRNPA1, KRT73, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, KRT79, ANKRD33, IGFBP6, ITGA5, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, NA NA NA NA NA NA NA NA NA LTS-038 KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, LOC400043, FIGNL2, MIR196A2, FLJ12825, MIR148B, NFE2, PCBP2, KRT76, CSAD, ATP5G2, PFDN5, GPR84, PRR13, CALCOCO1, RARG, C12orf10, ATG101, SP1, TARBP2, MIR615, MAP3K12, AAAS, SOAT2, SPRYD3, MFSD5, NPFF, ACVR1B, KRT75, ACVRL1, ESPL1) 0.44501415913307 80 0.0728762943085877 0.855584168192403 5749 0.287101245622302 2 1 1 -6.82267973029563 LTS-038 NA NA NA NA LTS-038 chr12 54859038 54864970 5933 * GTSF1 NA 0 NA 0.639 1 NA NA NA NA NA LTS-038 chr12 54864971 55759878 894908 * c(DCD, MUCL1, GTSF1, OR10A7, OR6C74, OR6C3, OR6C6, NCKAP1L, OR6C1, OR6C75, OR9K2, PDE1B, PPP1R1A, NEUROD4, GLYCAM1, LACRT, TESPA1) 0.46390659190994 8 0.0317014533240535 0.667790021170234 764 0.213202740496861 2 1 1 -7.29804683949341 LTS-038 chr12 55759879 55759893 15 * character(0) NA 0 NA 0.415 1 NA NA NA NA NA LTS-038 chr12 55759894 56030898 271005 * c(OR2AP1, OR10P1, OR6C2, OR6C4, OR6C76, OR6C70, OR6C65, OR6C68) 0.414400577293672 10 0.0401863713769288 0.560075991442099 272 0.224995921507545 2 1 1 -7.43958842779862 LTS-038 chr12 56030899 56030938 40 * OR10P1 0.482 1 NA 1.192 1 NA NA NA NA NA LTS-038 chr12 56030939 57639123 1608185 * c(MIR1228, BLOC1S1-RDH5, CDK2, RNF41, GDF11, CNPY2, PTGES3, BAZ2A, NXPH4, GPR182, OR10P1, SDR9C7, MYL6B, CS, DGKA, METTL7B, ERBB3, NEMP1, ESYT1, STAC3, BLOC1S1, SNORD59A, GLS2, ANKRD52, SLC39A5, SPRYD4, ORMDL2, APOF, ITGA7, LRP1, MIP, MMP19, MYL6, MYO1A, NAB2, NACA, PA2G4, ATP5B, IL23A, PRIM1, NDUFA4L2, RAB5B, RBMS2, RDH5, RPL41, RPS26, IKZF4, SHMT2, PMEL, SMARCC2, STAT2, STAT6, SUOX, TAC3, NA NA NA NA NA NA NA NA NA LTS-038 SNORD59B, NABP2, PYM1, SARNP, ZC3H10, DNAJC14, RDH16, HSD17B6, TIMELESS, COQ10A, CD63, ZBTB39, PAN2) 0.448653314697358 78 0.0791643890868899 0.822499706106095 5589 0.25749468851431 2 1 1 -6.7468806111711 LTS-038 NA NA NA NA LTS-038 chr12 57639124 57640479 1356 * STAC3 NA 0 NA 0.517 1 NA NA NA NA NA LTS-038 chr12 57640480 58087862 447383 * c(DCTN2, OS9, MBD6, ARHGEF25, DDIT3, DTX3, R3HDM2, STAC3, B4GALNT1, GLI1, INHBC, KIF5A, MARS, ARHGAP9, SLC26A10, PIP4K2C, INHBE) 0.424962099369378 26 0.126501839451509 0.756308830733098 1463 0.213173127279828 2 1 1 -6.76542144762161 LTS-038 chr12 58087863 58087899 37 * OS9 NA 0 NA 1.372 1 NA NA NA NA NA LTS-038 chr12 58087900 59314301 1226402 * c(AGAP2-AS1, LOC100506844, TSFM, CTDSP2, CDK4, AVIL, OS9, AGAP2, LRIG3, CYP27B1, METTL21B, MIR26A2, METTL1, TSPAN31, ATP23, MARCH9) 0.382023914765578 39 0.057207320011411 1.0480314113867 1182 0.305533235171994 3 2 1 -6.73423716439652 LTS-038 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.359 1 NA NA NA NA NA LTS-038 chr12 59445677 65515238 6069562 * c(MIR548Z, TMEM5, WIF1, XPOT, C12orf56, C12orf66, MON2, TBC1D30, GNS, RASSF3, LINC01465, DPY19L2, TBK1, FAM19A2, FLJ41278, MIRLET7I, AVPR1A, PPM1H, SRGAP1, MIR548C, SLC16A7, USP15) 0.445877757603487 48 0.0517427102824725 0.849046509996009 2308 0.318133816214577 2 1 1 -6.86466000659899 LTS-038 chr12 65515239 66583038 1067800 * c(WIF1, IRAK3, RPSAP52, LEMD3, MSRB3, TMBIM4, HMGA2, LLPH) 0.459080352419142 8 0.0188830990192666 0.964704740849221 784 0.339895160333565 2 1 1 -7.24538575431851 LTS-038 chr12 66583039 71979999 5396961 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, RAB3IP, CPM, BEST3, GRIP1, KCNMB4, IFNG, LRRC10, LYZ, MDM2, CNOT2, IL22, SLC35E3, IL26, CAND1, MDM1, NUP107, PTPRB, PTPRR, RAP1B, TSPAN8, YEATS4, DYRK2, LGR5, HELB) 0.442490138387826 84 0.0798458282083162 0.78860737838487 3648 0.302055648489225 2 1 1 -6.73933210285781 LTS-038 chr12 71980000 71980005 6 * LGR5 NA 0 NA 1.414 1 NA NA NA NA NA LTS-038 chr12 71980006 72312323 332318 * c(ZFC3H1, RAB21, TMEM19, TBC1D15, MRS2P2, THAP2, LGR5) NA 0 NA 0.983155023107664 659 0.368046640084614 3 NA NA -5.77083125630418 LTS-038 chr12 72312324 78401240 6088917 * c(LOC100507377, GLIPR1, KRR1, OSBPL8, TPH2, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, TRHDE-AS1, TRHDE, KCNC2, NAP1L1, ATXN7L3B, TBC1D15, BBS10, CAPS2, NAV3) 0.439313765906063 13 0.0688881479144049 0.831031773248623 2019 0.400831468683686 2 1 1 -6.77250858584276 LTS-038 chr12 78401241 93793199 15391959 * c(MIR1252, POC1B-GALNT4, MIR4699, MIR548AL, KERA, NUDT4, TSPAN19, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, MGAT4C, POC1B, OTOGL, CCDC59, LINC00936, C12orf74, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, PPP1R12A, ATP2B1, NTS, PAWR, SLC6A15, CLLU1OS, CLLU1, LOC643339, SYT1, MIR617, MIR618, BTG1, LOC728084, ACSS3, CEP290, ALX1, EEA1, LRRIQ1, METTL25, PPFIA2, GALNT4, LIN7A, NA NA NA NA NA NA NA NA NA LTS-038 NAV3, C12orf29, RASSF9) 0.452756335348647 94 0.0588227992472212 0.91169127292452 4885 0.367665005185446 2 1 1 -7.75000122000032 LTS-038 NA NA NA NA LTS-038 chr12 93793200 93795539 2340 * NUDT4 NA 0 NA 0.453704680508732 49 0.23165896270164 1 NA NA -5.76532670979843 LTS-038 chr12 93795540 105460518 11664979 * c(TMPO-AS1, PGAM1P5, MIR1827, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, MIR5700, PLXNC1, METAP2, NUDT4, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, SPIC, ANO4, AMDHD1, SOCS2-AS1, CEP83-AS1, KRT19P2, ALDH1L2, SLC5A8, FAM71C, RMST, ELK3, UHRF1BP1L, SLC17A8, TTC41P, UTP20, GAS2L3, LINC00485, MRPL42, HCFC2, HAL, APAF1, IGF1, C12orf42, ARL1, LTA4H, MIR135A2, ASCL1, MIR331, MYBPC1, NFYB, EID3, SYCP3, NA NA NA NA NA NA NA NA NA LTS-038 CHST11, PAH, CCDC53, CEP83, CDK17, NT5DC3, SLC25A3, PMCH, PARPBP, DRAM1, STAB2, VEZT, GOLGA2P5, SCYL2, FGD6, NDUFA12, ANKS1B, CHPT1, TMCC3, NTN4, LOC643711, LOC643770, ACTR6, SNRPF, SNORA53, TDG, TMPO, NR2C1, HSP90B1, C12orf73, TXNRD1, UBE2N, NUP37, GNPTAB, GLT8D2, USP44, SLC41A2, CRADD, SOCS2, NR1H4) 0.441937143203133 129 0.0677897000662897 0.792181674913694 8426 0.466738587806399 2 1 1 -6.73634152673234 LTS-038 NA NA NA NA LTS-038 chr12 105460519 105462495 1977 * ALDH1L2 NA 0 NA 0.872 1 NA NA NA NA NA LTS-038 chr12 105462496 106634066 1171571 * c(CKAP4, ALDH1L2, KIAA1033, C12orf75, APPL2, NUAK1) 0.45301150629895 10 0.0375907790111706 0.932287972609167 616 0.404710627025128 2 1 1 -6.86178495223183 LTS-038 chr12 106634067 110238481 3604415 * c(USP30-AS1, LOC100287944, LOC100505978, CKAP4, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, DAO, ISCU, CORO1C, TCP11L2, MYO1H, ACACB, MMAB, TMEM119, MVK, SSH1, RIC8B, SVOP, POLR3B, TRPV4, RFX4, SELPLG, LOC728739, UNG, MTERF2, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B, TMEM263, WSCD2, SART3) 0.449006190368025 68 0.0354267195531389 0.814630513455281 4089 0.866988932283573 2 1 1 -6.74222574266669 LTS-038 chr12 110238482 110271098 32617 * TRPV4 0 1 NA 0.994222523964813 25 0.530846258346049 3 3 0 -5.7646193502003 LTS-038 chr12 110271099 110810885 539787 * c(MIR4497, IFT81, C12orf76, ATP2A2, GLTP, ANAPC7, TRPV4, TCHP, ANKRD13A, GIT2) 0.428075693507463 4 0.045066617356975 0.81034705614389 926 0.236789494757486 2 1 1 -6.81664478533633 LTS-038 chr12 110810886 111066825 255940 * c(ARPC3, RAD9B, PPTC7, FAM216A, GPN3, ANAPC7, VPS29, TCTN1, HVCN1) 0.255043440584108 5 0.257343738995142 0.737870304508245 599 0.25991992687041 2 2 0 -6.7913810781027 LTS-038 chr12 111066826 111353556 286731 * c(CCDC63, MYL2, PPP1CC, TCTN1, HVCN1) 0.476 1 NA 0.704415129441575 317 0.250925736449321 2 2 0 -5.80723754348953 LTS-038 chr12 111353557 113306155 1952599 * c(LINC01405, SH2B3, TRAFD1, ERP29, FAM109A, ALDH2, RPH3A, CUX2, HECTD4, MYL2, MAPKAPK5-AS1, PTPN11, RPL6, ATXN2, NAA25, ACAD10, BRAP, MAPKAPK5, ADAM1A, TMEM116) 0.456453975898577 7 0.0323647368361955 0.75022990085984 2234 0.273080737452669 2 1 1 -6.86963357309165 LTS-038 chr12 113306156 113306231 76 * RPH3A NA 0 NA 0.79 1 NA NA NA NA NA LTS-038 chr12 113306232 117628345 4322114 * c(LINC00173, MIR4472-2, SDS, SDSL, IQCD, DTX1, PLBD2, RPH3A, FBXO21, MED13L, TBX5-AS1, FBXW8, CFAP73, OAS1, OAS2, OAS3, TPCN1, TESC, LHX5, MAP1LC3B2, TBX5, TBX3, MIR620, DDX54, C12orf49, SLC8B1, RASAL1, RNFT2, RITA1, HRK, RBM19) 0.458254956404008 51 0.0716704276258934 0.843903819422531 2866 0.282336403528477 2 1 1 -6.85073136304208 LTS-038 chr12 117628346 117628353 8 * character(0) NA 0 NA 0.681 1 NA NA NA NA NA LTS-038 chr12 117628354 117769204 140851 * NOS1 0.436886043839846 2 0.0417193000900063 0.665379701790063 302 0.187045647842449 2 1 1 -6.83457551790949 LTS-038 chr12 117769205 119772825 2003621 * c(LINC00934, CCDC60, HSPB8, KSR2, NOS1, PEBP1, TAOK3, VSIG10, WSB2, RFC5, SUDS3, SRRM4) 0.445472885761065 29 0.0415804757138628 0.793363253985354 1040 0.249727384277601 2 1 1 -6.73401985837924 LTS-038 chr12 119772826 120105914 333089 * c(CCDC60, TMEM233, PRKAB1) 0.454561060889551 4 0.00842120339777321 0.611167598262645 148 0.17234227689782 2 1 1 -7.88191612505094 LTS-038 chr12 120105915 120172173 66259 * c(MIR1178, CIT, PRKAB1) 0.485931406055838 6 0.014386336109888 0.923916574486923 248 0.20392796420475 2 1 1 -9.65128253526924 LTS-038 chr12 120172174 120189879 17706 * CIT 0.278 1 NA 0.861275097303888 15 0.504188296269596 2 2 0 -5.76464770824737 LTS-038 chr12 120189880 120593506 403627 * c(MIR4498, GCN1, RAB35, CIT, BICDL1) 0.293 1 NA 0.823703339823236 466 0.264447458163478 2 2 0 -5.76769292408751 LTS-038 chr12 120593507 120594293 787 * GCN1 NA 0 NA 1.042 1 NA NA NA NA NA LTS-038 chr12 120594294 120875772 281479 * c(PXN-AS1, GCN1, SIRT4, MSI1, PLA2G1B, PXN, RPLP0) 0.380746895315864 2 0.0226274169979695 1.08318493203154 466 0.32662748429755 3 2 1 -6.7363608651008 LTS-038 chr12 120875773 120875790 18 * character(0) 0.127 1 NA 0.183 1 NA NA NA NA NA LTS-038 chr12 120875791 121019282 143492 * c(NRAV, COX6A1, GATC, POP5, TRIAP1, COQ5, DYNLL1, SRSF9, RNF10) 0.161846602646079 8 0.0260713307238868 0.830094078037995 385 0.325303068918397 3 3 0 -7.14877635455234 LTS-038 chr12 121019283 121078444 59162 * CABP1 NA 0 NA 0.477 1 NA NA NA NA NA LTS-038 chr12 121078445 123664514 2586070 * c(MIR4304, CLIP1-AS1, LOC100507091, MIR4700, MPHOSPH9, CAMKK2, SPPL3, TMEM120B, WDR66, MLXIP, SETD1B, ABCB9, LRRC43, HCAR1, MORN3, HNF1A-AS1, HPD, HCAR2, LINC01089, ACADS, IL31, P2RX4, P2RX7, ARL6IP4, ANAPC5, RHOF, ZCCHC8, DIABLO, PSMD9, PITPNM2, BCL7A, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, RNF34, CCDC62, KDM2B, UNC119B, ORAI1, DENR, OASL, HCAR3, HIP1R, CABP1, KNTC1, MLEC NA NA NA NA NA NA NA NA NA LTS-038 ) 0.24399108284234 60 0.0751973223468469 0.540420244445886 4694 0.190500724695155 1 1 0 -6.81086986522623 LTS-038 NA NA NA NA LTS-038 chr12 123664515 123892095 227581 * c(MPHOSPH9, KMT5A, SBNO1, CDK2AP1, C12orf65) 0.478 1 NA 0.507978571389128 352 0.173302918555637 1 1 0 -5.78936243453512 LTS-038 chr12 123892096 124021002 128907 * c(MIR3908, SNRNP35, RILPL2, RILPL1, KMT5A) 0.369800301443569 7 0.117122036477221 0.593165651063175 211 0.173978726938719 1 1 0 -7.15586049786469 LTS-038 chr12 124021003 124069138 48136 * c(MIR3908, TMED2) NA 0 NA 0.908 1 NA NA NA NA NA LTS-038 chr12 124069139 124800592 731454 * c(ZNF664-FAM101A, TMED2, RFLNA, ZNF664, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, DDX55, TCTN2, CCDC92) 0.444964829601803 16 0.0397017526901101 0.726691454239116 1323 0.22475793202369 2 1 1 -6.80964693316926 LTS-038 chr12 124800593 124808944 8352 * character(0) NA 0 NA 0.918 1 NA NA NA NA NA LTS-038 chr12 124808945 125510158 701214 * c(MIR5188, BRI3BP, DHX37, UBC, SCARB1, NCOR2) 0.469763092665677 13 0.0355434007001769 0.948605541110655 669 0.289630725421536 2 1 1 -7.15807147093491 LTS-038 chr12 125510159 125510257 99 * BRI3BP NA 0 NA 0.772 1 NA NA NA NA NA LTS-038 chr12 125510258 125834214 323957 * c(TMEM132B, BRI3BP, AACS) 0.388139269520923 5 0.206671962297744 0.663609867802591 317 0.228816920539162 2 1 1 -6.90279945092584 LTS-038 chr12 125834215 133660742 7826528 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, FBRSL1, PXMP2, RAN, SFSWAP, SNORA49, ZNF140, NOC4L, PUS1, ULK1, TMEM132C, PIWIL1) 0.436234325879391 98 0.0689308633162662 0.810315560372377 4346 0.301279327006383 2 1 1 -6.7532066734887 LTS-038 chr12 133660743 133812039 151297 * c(ZNF891, ZNF268, ANHX, ZNF10, ZNF140) 0.427689615433704 26 0.0945859641563409 0.673722636899484 458 0.239285535199954 2 1 1 -6.79838852557251 LTS-038 chr12 133812040 133812708 669 * ANHX NA 0 NA 0.546066708085836 11 0.118573030813772 1 NA NA -5.76441024143564 LTS-038 chr13 19271620 19271676 57 * character(0) 0.497 1 NA 2.955 1 NA NA NA NA NA LTS-038 chr13 19271677 20568102 1296426 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, MPHOSPH8, PSPC1, TUBA3C, ZMYM2, ZMYM5, TPTE2) 0.431166606388814 10 0.0687934912941947 1.11895085962163 429 0.493857892062312 4 2 2 -6.8290945508452 LTS-038 chr13 20568103 20577022 8920 * ZMYM2 NA 0 NA 1.5 1 NA NA NA NA NA LTS-038 chr13 20577023 25075818 4498796 * c(MIR2276, SACS-AS1, LINC00327, MIR4499, LINC00424, SPATA13-AS1, SAP18, GJB6, PARP4, EEF1AKMT1, SKA3, MICU2, SPATA13, FGF9, ZDHHC20, SACS, LATS2, GJA3, GJB2, C1QTNF9, C1QTNF9B, ANKRD20A19P, MIPEP, CRYL1, IL17D, C1QTNF9B-AS1, TNFRSF19, XPO4, SGCG, BASP1P1, MIPEPP3, ZMYM2, MRPL57, IFT88) 0.4493651911538 60 0.0421135269544403 1.3015098055507 2515 0.497082138883486 4 2 2 -6.73978940596177 LTS-038 chr13 25075819 25828157 752339 * c(PARP4, AMER2, TPTE2P6, ATP12A, PABPC3, CENPJ, RNF17, TPTE2P1, MTMR6) 0.36638185724879 15 0.175585550983803 1.06010826660321 863 0.497354823278151 3 2 1 -6.73653265039206 LTS-038 chr13 25828158 25828405 248 * MTMR6 NA 0 NA 1.295 1 NA NA NA NA NA LTS-038 chr13 25828406 36046729 10218324 * c(LINC00426, PAN3-AS1, MINOS1P1, TEX26-AS1, LINC00297, MTUS2-AS1, LINC00398, LINC00423, LINC00457, STARD13-AS, FRY, USPL1, CDK8, N4BP2L2, CDX2, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, B3GLCT, EEF1DP3, USP12, MTIF3, GSX1, LNX2, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, PAN3, SNORD102, NBEA, GPR12, SLC46A3, GTF3A, HMGB1, PDX1, RASL11A, SHISA2, ATP5EP2, LINC00544, POLR1D, POMP, ATP8A2, UBL3, RFC3, RNF6, RPL21, NA NA NA NA NA NA NA NA NA LTS-038 SNORA27, URAD, ZAR1L, SLC7A1, BRCA2, KATNAL1, MEDAG, STARD13, N4BP2L1, MTMR6, KL, NUP58) 0.445981886898469 88 0.103668809427266 1.25149240327376 5293 0.509495714043342 4 2 2 -6.76972378450485 LTS-038 NA NA NA NA LTS-038 chr13 36046730 36047928 1199 * c(MIR548F5, NBEA) NA 0 NA 0.799 1 NA NA NA NA NA LTS-038 chr13 36047929 36829301 781373 * c(MIR548F5, CCDC169-SOHLH2, NBEA, SOHLH2, CCDC169, DCLK1) 0.370846272537063 23 0.0390724471524655 1.00693283110995 537 0.329559653494859 3 2 1 -6.76997337679774 LTS-038 chr13 36829302 37011845 182544 * c(SPG20-AS1, CCDC169-SOHLH2, SPG20, CCDC169, CCNA1) NA 0 NA 1.08471364959974 168 0.414155972237383 3 NA NA -5.76507301619302 LTS-038 chr13 37011846 37269199 257354 * c(SERTM1, CCNA1) 0.217 1 NA 0.847682590203517 43 0.174949646291559 2 2 0 -5.78221343556511 LTS-038 chr13 37269200 39588630 2319431 * c(LINC00366, LINC00571, POSTN, EXOSC8, CSNK1A1L, STOML3, ALG5, FREM2, SERTM1, LINC00547, SMAD9, UFM1, SUPT20H, RFXAP, TRPC4, PROSER1) 0.202328618690161 19 0.0628170554558262 0.807905408487051 1317 0.304176263485767 2 2 0 -6.78026139153512 LTS-038 chr13 39588631 40326013 737383 * c(MIR4305, LHFP, NHLRC3, COG6, PROSER1) 0.24502809077426 2 0.00707106781186548 1.04809976066347 298 0.386449821626516 5 4 1 -8.53337161393408 LTS-038 chr13 40326014 45710862 5384849 * c(MIR320D1, OR7E37P, VWA8-AS1, TPTE2P5, MIR5006, LINC00332, SMIM2-IT1, SLC25A15, MRPS31, WBP4, AKAP11, LINC00284, FAM216B, LACC1, LINC00330, DGKH, CCDC122, ELF1, VWA8, FOXO1, NUFIP1, SUGT1P3, RGCC, DNAJC15, GTF2F2, SERP2, LINC00548, ENOX1, GPALPP1, COG6, TSC22D1-AS1, LINC00598, MIR621, NAA16, KBTBD7, TNFSF11, TSC22D1, KBTBD6, EPSTI1, MTRF1) 0.226998444433557 35 0.0710181300085828 0.850497184613744 2290 0.2988602787765 2 2 0 -7.0751739492094 LTS-038 chr13 45710863 70682608 24971746 * c(LINC00462, TPT1-AS1, MIR1297, MIR759, MIR3169, MIR3613, CPB2-AS1, MIR4703, MIR5007, MIR5693, LINC00558, LINC00563, LINC00441, MED4-AS1, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, RNASEH2B-AS1, MRPS31P5, LPAR6, TRIM13, DLEU1, OLFM4, SUGT1, RCBTB2, LECT1, ARL11, WDFY2, CPB2, HNRNPA1L2, ST13P4, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, FNDC3A, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NA NA NA NA NA NA NA NA NA LTS-038 PCDH17, OR7E156P, SIAH3, KCNRG, LINC00282, MLNR, MED4, GTF2F2, GUCY1B2, HTR2A, LINC00550, NEK5, KPNA3, KCTD4, LCP1, MIR16-1, ALG11, NEK3, PCDH8, PCDH9, VPS36, PHF11, ATP7B, RCBTB1, NUDT15, THSD1, CYSLTR2, SPRYD7, KLHL1, RB1, ATXN8OS, LINC00371, SERPINE3, PCDH20, SNORA31, TPT1, PRR20B, PRR20D, PRR20E, RNASEH2B, DHRS12, RUBCNL, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, EBPL, SUCLA2, DLEU2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ITM2B, UTP14C) 0.19741049730914 79 0.0409894976297147 0.778414832971902 5911 0.303785706312864 2 2 0 -6.89324611292381 LTS-038 NA NA NA NA LTS-038 chr13 72012091 77459701 5447611 * c(LINC00381, PIBF1, KLF12, KCTD12, DACH1, COMMD6, DIS3, LINC00347, LMO7, MZT1, CTAGE11P, KLF5, LMO7DN, UCHL3, BORA, TBC1D4) 0.190568163877162 30 0.0314271461835366 0.885790219814708 1644 0.28816227635478 2 2 0 -7.14605042836586 LTS-038 chr13 77459702 103331512 25871811 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR3665, RBM26-AS1, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, GPC5-AS1, GPC6-AS2, LINC00331, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00446, LINC00559, CLDN10-AS1, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, SPRY2, ABCC4, SOX21, SLITRK1, KCTD12, CLN5, SLAIN1, RNF113B, LINC00410, GPR180, DCT, CLYBL, GPR183, EDNRB, FGF14, NA NA NA NA NA NA NA NA NA LTS-038 GPC5, DZIP1, MYCBP2, DOCK9, TGDS, NALCN, SLITRK5, FBXL3, HS6ST3, OXGR1, FGF14-IT1, FGF14-AS2, GPR18, UBAC2, IPO5, MIR19B1, MIR17HG, PCCA, POU4F1, NDFIP2, UGGT2, DNAJC3, RAP2A, RBM26, MIR4500HG, SLC15A1, BTF3P11, MIR622, MIR623, TPP2, ACOD1, ZIC2, RNF219, SLITRK6, STK24, TMTC4, ZIC5, GGACT, SCEL, CLDN10, ITGBL1, TM9SF2) 0.198778027878686 75 0.0506931521576206 0.750619473082345 5579 0.289342500371898 2 2 0 -7.4185731039584 LTS-038 NA NA NA NA LTS-038 chr13 103331513 103338122 6610 * c(METTL21C, TPP2) NA 0 NA 0.428 1 NA NA NA NA NA LTS-038 chr13 103338123 103446117 107995 * c(METTL21C, CCDC168, KDELC1, TEX30) 0.209352494579696 16 0.0534601097392564 0.550128945678471 590 0.202981992553594 2 2 0 -7.06596618769049 LTS-038 chr13 103446118 115091399 11645282 * c(LINC00552, MCF2L-AS1, GAS6-AS2, BIVM-ERCC5, MIR548AS, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, ERCC5, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, CHAMP1, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, NA NA NA NA NA NA NA NA NA LTS-038 UPF3A, SLC10A2, SOX1, TFDP1, LINC00460, FAM155A, KDELC1, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7, CDC16) 0.174140272599883 126 0.0487282115737342 0.891606610833533 4960 0.328073216500952 2 2 0 -7.46056535116889 LTS-038 NA NA NA NA LTS-038 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 0.660885869380237 27 0.200780173480048 1 NA NA -5.76516264075823 LTS-038 chr14 19434116 19889937 455822 * c(BMS1P17, POTEG) 0 1 NA 1.33857386941718 4 2.62748701233707 4 4 0 -5.7644406783079 LTS-038 chr14 19889938 20712010 822073 * c(OR4K14, OR4L1, OR11H6, OR4N2, OR4K2, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4Q3, OR4M1, POTEM, OR4K5, OR11H2, OR4K1, OR4K15) 0.285736244378156 28 0.057247108935574 1.06026721976586 482 0.930592419922094 4 3 1 -6.83655583178131 LTS-038 chr14 20712011 20754345 42335 * character(0) NA 0 NA 4.955 1 NA NA NA NA NA LTS-038 chr14 20754346 20755287 942 * character(0) 0.255 1 NA 1.73878382783586 21 1.02853544513778 6 6 0 -5.76441088264111 LTS-038 chr14 20755288 20755790 503 * character(0) 0.205 1 NA 1.81499895766959 11 0.47273952082035 6 6 0 -5.76441017486485 LTS-038 chr14 20755791 21539068 783278 * c(SNORD126, PARP2, EDDM3A, RNASE11, TPPP2, RNASE8, KLHL33, ANG, SLC39A2, APEX1, RNASE10, OR6S1, RNASE9, RNASE13, PNP, RNASE12, OSGEP, ARHGEF40, NDRG2, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, EDDM3B, ECRP, METTL17, TEP1, RNASE7, RPPH1, TMEM55B, TTC5) 0.168558292464742 53 0.0272272594558211 2.17445160513949 1576 0.819289232477733 8 7 1 -6.75159419778782 LTS-038 chr14 21539069 21541147 2079 * ARHGEF40 NA 0 NA 4.806 1 NA NA NA NA NA LTS-038 chr14 21541148 21584798 43651 * c(ZNF219, ARHGEF40, TMEM253) NA 0 NA 2.7381144967966 269 0.884469494116905 10 NA NA -5.76443355494261 LTS-038 chr14 21584799 21622992 38194 * character(0) NA 0 NA 1.366 1 NA NA NA NA NA LTS-038 chr14 21622993 22509019 886027 * c(SUPT16H, OR10G3, OR10G2, OR4E2, LINC00641, HNRNPC, SNORD8, OR5AU1, METTL3, RPGRIP1, CHD8, SALL2, SNORD9, RAB2B, TOX4) 0.209071078192947 39 0.0524963593622339 1.72202653216043 1490 0.582304057509537 6 5 1 -6.76861802789291 LTS-038 chr14 22509020 22509081 62 * character(0) NA 0 NA 2.021 1 NA NA NA NA NA LTS-038 chr14 22509082 22995965 486884 * character(0) 0.183395949225391 10 0.0257690598284929 2.40776314625742 625 0.667629140846692 8 7 1 -6.8299333593264 LTS-038 chr14 22995966 23000062 4097 * character(0) 0.286036521987675 2 0.0197989898732233 1.4808952503811 18 0.23315144170955 8 6 2 -6.76667855099846 LTS-038 chr14 23000063 23005207 5145 * character(0) NA 0 NA 1.29843408473202 31 0.239674945644914 4 NA NA -5.76441052019422 LTS-038 chr14 23005208 23006441 1234 * character(0) NA 0 NA 1.011 1 NA NA NA NA NA LTS-038 chr14 23006442 23009291 2850 * character(0) 0.396 1 NA 0.947470326130748 13 0.300696136767113 3 3 0 -5.76461090687475 LTS-038 chr14 23009292 23991000 981709 * c(MIR208B, BCL2L2-PABPN1, MIR4707, EFS, PRMT5, CEBPE, CMTM5, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, NGDN, LRP10, MIR208A, MMP14, MYH6, MYH7, OXA1L, SLC22A17, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, BCL2L2, C14orf93, ABHD4, CDH24, IL25, THTPA, PABPN1, AJUBA, ZFHX2, SLC7A7, PPP1R3E) 0.453195257291307 59 0.0381866666244924 0.787045541428963 2783 0.266664243926836 2 1 1 -6.76305330835527 LTS-038 chr14 23991001 23991126 126 * c(THTPA, ZFHX2) NA 0 NA 0.464 1 NA NA NA NA NA LTS-038 chr14 23991127 24004621 13495 * c(THTPA, ZFHX2) 0.475 1 NA 0.609270726768409 234 0.183105776771131 1 1 0 -5.76720395405704 LTS-038 chr14 24004622 24025234 20613 * c(THTPA, ZFHX2) NA 0 NA 1.035 1 NA NA NA NA NA LTS-038 chr14 24025235 24912092 886858 * c(NEDD8-MDP1, DHRS2, IRF9, TM9SF1, DHRS4, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, DHRS4L2, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, DHRS4-AS1, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, JPH4, AP1G2, CARMIL3, CPNE6, REC8) 0.442875361072845 70 0.0494677446825217 0.825230585536162 3233 0.257287625649191 2 1 1 -6.74258447795571 LTS-038 chr14 24912093 24970725 58633 * character(0) NA 0 NA 0.592 1 NA NA NA NA NA LTS-038 chr14 24970726 25279437 308712 * c(CMA1, CTSG, GZMH, GZMB) 0.467 1 NA 0.617565564749501 165 0.179871031854819 1 1 0 -5.84722781731967 LTS-038 chr14 25279438 31539194 6259757 * c(MIR4307, LINC00645, LOC100506071, MIR548AI, AP4S1, COCH, FOXG1, SCFD1, STXBP6, STRN3, LINC01551, NOVA1, G2E3, PRKD1, MIR624) 0.453132783013796 5 0.0270499537892397 0.85279812245787 1029 0.317174110534673 2 1 1 -6.94428440511656 LTS-038 chr14 31539195 31542129 2935 * AP4S1 NA 0 NA 0.457 1 NA NA NA NA NA LTS-038 chr14 31542130 35870762 4328633 * c(CFL2, AP4S1, BAZ1A, EGLN3, DTD2, SPTSSA, HECTD1, HEATR5A, IGBP1P1, FAM177A1, GPR33, ARHGAP5, NFKBIA, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, NUBPL, ARHGAP5-AS1, AKAP6, KIAA0391) 0.454951263066224 34 0.0357161018127504 0.755771213153676 2466 0.242545860779089 2 1 1 -6.91218083099947 LTS-038 chr14 35870763 35873711 2949 * NFKBIA 0.494 1 NA 1.24429593356678 45 0.389675890965813 4 4 0 -5.76443400453948 LTS-038 chr14 35873712 35873770 59 * NFKBIA 0.465 1 NA 0.462 1 NA NA NA NA NA LTS-038 chr14 35873771 57879883 22006113 * c(SNORD127, KTN1-AS1, SLC25A21-AS1, LOC100288846, OTX2-AS1, MIR4308, MIR548Y, LINC00871, LINC00648, NA, MIR4503, MIR5580, FRMD6-AS2, PTCSC3, LINC00609, CNIH1, CDKN3, SEC23A, EXOC5, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, NA, C14orf28, TRAPPC6B, LRR1, KLHDC1, FRMD6, SOCS4, NAA30, RPL10L, MIPOL1, FRMD6-AS1, ABHD12B, LRFN5, CLEC14A, MDGA2, LINC01599, NID2, ATG14, FKBP3, SAMD4A, FAM179B, KLHDC2, RALGAPA1, SFTA3, NA NA NA NA NA NA NA NA NA LTS-038 FBXO33, NKX2-8, GCH1, ATP5S, GMFB, LINC00639, LINC01588, LINC00640, GPR137C, ERO1A, FOXA1, ARF6, TBPL2, KTN1, LGALS3, MGAT2, MIA2, NFKBIA, OTX2, PAX9, ATL1, NIN, MBIP, C14orf166, PNN, POLE2, GNG2, KLHL28, TMEM260, PRPF39, FBXO34, DNAAF2, MIS18BP1, AP5M1, PSMC6, PELI2, PTGDR, PTGER2, TXNDC16, FANCM, PYGL, SAV1, RPL36AL, RPS29, RPL13AP3, LINC00520, GNPNAT1, BMP4, SOS2, SSTR1, STYX, NKX2-1, VCPKMT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 L2HGDH, DDHD1, TMX1, FSCB, BRMS1L, INSM2, GEMIN2, CDKL1, SLC25A21, NEMF, MAPK1IP1L, DLGAP5) 0.449379609898556 157 0.0576575573931709 0.807167013143858 9714 0.357173819780709 2 1 1 -6.74808782273062 LTS-038 NA NA NA NA LTS-038 chr14 57879884 58606161 726278 * c(C14orf37, SLC35F4, C14orf105) 0.443302017110254 15 0.0505408839691289 0.650947193844526 366 0.672865867802489 2 1 1 -6.77364101807815 LTS-038 chr14 58606162 58666885 60724 * c(C14orf37, ACTR10) NA 0 NA 0.964 1 NA NA NA NA NA LTS-038 chr14 58666886 60865119 2198234 * c(L3HYPDH, C14orf37, DAAM1, TIMM9, LRRC9, PSMA3-AS1, TOMM20L, DACT1, JKAMP, DHRS7, PPM1A, ACTR10, PSMA3, ARID4A, RTN1, PCNX4, GPR135, CCDC175, KIAA0586) 0.426470763657338 21 0.103151968335212 0.842791562618332 1852 0.297622207668395 2 1 1 -6.79475050681143 LTS-038 chr14 60865120 60867038 1919 * character(0) NA 0 NA 0.412218849086135 43 0.128539823234878 1 NA NA -5.76998800494897 LTS-038 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.896 1 NA NA NA NA NA LTS-038 chr14 60899979 61643095 743117 * c(SLC38A6, C14orf39, MNAT1, SIX6, SIX4, TRMT5, SIX1) 0.429539685345361 5 0.0471243037083838 0.926632492374332 707 0.358134235431478 2 1 1 -6.87179364231577 LTS-038 chr14 61643096 61744100 101005 * c(TMEM30B, PRKCH) NA 0 NA 0.697 1 NA NA NA NA NA LTS-038 chr14 61744101 68773353 7029253 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, WDR89, GPHB5, RDH12, PPP1R36, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, KCNH5, GPX2, HIF1A, HSPA2, RAB15, ARG2, FLJ22447, MAX, LINC00238, TEX21P, MTHFD1, RDH11, ATP6V1D, PIGH, PPP2R5E, PRKCH, RHOJ, PLEKHH1, RAD51B, MPP5, FUT8-AS1, LINC00643, SNAPC1, SPTB, ZBTB25, SGPP1, SYT16, CHURC1, NA NA NA NA NA NA NA NA NA LTS-038 AKAP5) 0.445195882257072 137 0.0436075608643058 0.821395920364753 5105 0.279686158925988 2 1 1 -6.77501072143368 LTS-038 NA NA NA NA LTS-038 chr14 68773354 69255644 482291 * c(RAD51B, ZFP36L1) 0.095 1 NA 0.742572248196167 129 0.342826117515535 2 2 0 -5.77746391196763 LTS-038 chr14 69255645 69262649 7005 * ZFP36L1 0.265193473052113 5 0.0323419232575924 0.825203120581178 95 0.464291788587315 1 1 0 -6.74996827669685 LTS-038 chr14 69262650 70245969 983320 * c(LOC100289511, ACTN1-AS1, ERH, PLEKHD1, EXD2, SLC39A9, CCDC177, GALNT16, SRSF5, SLC10A1, ZFP36L1, ACTN1, DCAF5, SUSD6) 0.238395532470684 16 0.0765042210164468 0.645929807239314 968 0.269161592875232 1 1 0 -7.05064364779664 LTS-038 chr14 70245970 71200125 954156 * c(MED6, SYNJ2BP-COX16, ADAM21P1, TTC9, ADAM20P1, MAP3K9, COX16, SYNJ2BP, SMOC1, SLC8A3, SLC10A1, ADAM21, ADAM20) 0.233537863590433 22 0.0592508790370798 0.493787253110331 829 0.200784877964215 1 1 0 -7.09875034699815 LTS-038 chr14 71200126 71200419 294 * MAP3K9 NA 0 NA 0.63 1 NA NA NA NA NA LTS-038 chr14 71200420 73406602 2206183 * c(LOC145474, PCNX1, SIPA1L1, DCAF4, SNORD56B, MAP3K9, DPF3, RGS6) 0.250855489618599 8 0.0455190305570883 0.610630429337067 979 0.21959285340045 1 1 0 -7.15217179598834 LTS-038 chr14 73406603 73406868 266 * DCAF4 NA 0 NA 0.413 1 NA NA NA NA NA LTS-038 chr14 73406869 73989983 583115 * c(DCAF4, HEATR4, ZFYVE1, PSEN1, RBM25, NUMB, PAPLN) 0.231436729212239 24 0.0804832213137836 0.53165861437975 951 0.18449079835339 1 1 0 -6.87667530902272 LTS-038 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.157 1 NA NA NA NA NA LTS-038 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.177208570611403 45 0.139598222181959 0 NA NA -5.90095426249231 LTS-038 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 0.489 1 NA NA NA NA NA LTS-038 chr14 74035793 74128846 93054 * c(ACOT2, ACOT4, ACOT1, ACOT6, DNAL1) 0.2735646209505 4 0.0541256254775253 0.4053654023644 135 0.17985968303985 1 1 0 -6.88685229982658 LTS-038 chr14 74128847 74138188 9342 * DNAL1 NA 0 NA 1.292 1 NA NA NA NA NA LTS-038 chr14 74138189 74353124 214936 * c(MIR4505, PTGR2, ZNF410, DNAL1, ELMSAN1, PNMA1) 0.281248369115637 15 0.0728234656059236 0.635903310862577 367 0.199995135622267 1 1 0 -6.8191472372654 LTS-038 chr14 74353125 74353204 80 * ZNF410 0.191 1 NA 0.123 1 NA NA NA NA NA LTS-038 chr14 74353205 74947079 593875 * c(MIR4709, NPC2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.234631115101298 40 0.0655156078487781 0.48636434555304 1144 0.478810549580279 1 1 0 -6.92516864531293 LTS-038 chr14 74947080 75052774 105695 * c(NPC2, ISCA2, LTBP2) 0.232027962299247 2 0.0417193000900063 0.683224921793122 333 0.178967097751232 1 1 0 -7.29083643783607 LTS-038 chr14 75052775 75070238 17464 * LTBP2 NA 0 NA 0.54 1 NA NA NA NA NA LTS-038 chr14 75070239 75553765 483527 * c(DLST, MLH3, PROX2, LTBP2, FCF1, PGF, YLPM1, ZC2HC1C, RPS6KL1, EIF2B2, NEK9, ACYP1, AREL1) 0.264310799777776 8 0.068387420522449 0.572778835157589 1164 0.144722402304458 1 1 0 -6.76623692173842 LTS-038 chr14 75553766 75618932 65167 * c(TMED10, NEK9) NA 0 NA 0.587038574221327 197 0.159101491753969 1 NA NA -5.7720588355419 LTS-038 chr14 75618933 75643068 24136 * TMED10 NA 0 NA 1.074 1 NA NA NA NA NA LTS-038 chr14 75643069 75705863 62795 * TMED10 0.488 1 NA 0.838763697402459 19 0.164125077107895 2 2 0 -5.76775500644653 LTS-038 chr14 75705864 77599710 1893847 * c(BATF, C14orf1, IFT43, JDP2, LRRC74A, ESRRB, VASH1, TTLL5, ANGEL1, FOS, ZDHHC22, FLVCR2, GPATCH2L, IRF2BPL, TGFB3, LINC01220, CIPC) 0.443928840739778 52 0.0721708918607486 0.845889496238937 1628 0.272965464626163 2 1 1 -6.78292519966862 LTS-038 chr14 77599711 79181267 1581557 * c(MIR1260A, AHSA1, NOXRED1, ISM2, SAMD15, SNW1, ZDHHC22, TMED8, C14orf178, GSTZ1, POMT2, ADCK1, TMEM63C, NGB, VIPAS39, SLIRP, ALKBH1, NRXN3, SPTLC2) 0.447105846382957 35 0.037176006538961 0.75929715371593 1603 0.264096251761213 2 1 1 -6.76981576795801 LTS-038 chr14 79181268 83157152 3975885 * c(DIO2-AS1, CEP128, DIO2, GTF2A1, SEL1L, SNORA79, TSHR, STON2, NRXN3) 0.4508065998481 22 0.0342950023494267 0.917816112443612 1134 0.302797871030178 2 1 1 -7.21548344366845 LTS-038 chr14 83157153 83157717 565 * character(0) NA 0 NA 0.666 1 NA NA NA NA NA LTS-038 chr14 83157718 103573229 20415512 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, LINC00911, FBLN5, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, SERPINA3, ANKRD9, AK7, IFI27L1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, TTC7B, SYNE3, EML5, DIO3, DYNC1H1, EML1, RCOR1, DICER1, FLRT2, LINC00521, SERPINA11, NA NA NA NA NA NA NA NA NA LTS-038 GALC, TMEM251, TCL6, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SERPINA5, SERPINA10, GLRX5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, KCNK13, C14orf132, PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, TCL1A, AMN, IFI27L2, SETD3, HHIPL1, GON7, GPR65, SERPINA6, DLK1, CCNK, FAM181A, EFCAB11, EXOC3L4, WDR20, RPS6KA5, TRIP11, CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.44831755697134 272 0.0554818268439441 0.818522727876883 13478 0.301193936675178 2 1 1 -6.81521262668325 LTS-038 NA NA NA NA LTS-038 chr14 103573230 103996691 423462 * c(LINC00605, CKB, TRMT61A, EIF5, MARK3, SNORA28, TNFAIP2, EXOC3L4) 0.457337178056323 7 0.051448541096443 1.01891311122453 498 0.647880132821693 2 1 1 -6.80359916734339 LTS-038 chr14 103996692 103998847 2156 * TRMT61A NA 0 NA 0.72 1 NA NA NA NA NA LTS-038 chr14 103998848 105926899 1928052 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TRMT61A, TDRD9, C14orf79, PLD4, ADSSL1, LINC00637, LINC00638, AKT1, PACS2, PPP1R13B, NUDT14, KIF26A, CEP170B, BRF1, GPR132, JAG2, ASPG, KLC1, TMEM179, C14orf180, MIR203A, CDCA4, INF2, RD3L, TEX22, XRCC3, ZFYVE21, APOPT1, BTBD6, MTA1, BAG5, C14orf2) 0.439648006491266 92 0.0695780908492774 0.823412907330811 3467 0.262267540052082 2 1 1 -6.75198555337003 LTS-038 chr14 105926900 105927111 212 * MTA1 NA 0 NA 1.469 1 NA NA NA NA NA LTS-038 chr14 105927112 106235638 308527 * c(CRIP1, CRIP2, ELK2AP, C14orf80, TMEM121, MTA1) 0.42098204328225 11 0.138649459888139 0.988692989565069 408 0.437484924103114 3 2 1 -6.78980260371002 LTS-038 chr14 106235639 106235891 253 * character(0) NA 0 NA 0.715 1 NA NA NA NA NA LTS-038 chr14 106235892 106518848 282957 * c(ADAM6, FAM30A) 0.445022243572833 22 0.0566165044084194 0.712174190459756 326 0.296394606298354 2 1 1 -6.75834626474266 LTS-038 chr14 106518849 106586290 67442 * character(0) 0.379 1 NA 0.465439777249472 25 0.351429352786588 1 1 0 -5.7729640881314 LTS-038 chr14 106586291 107113858 527568 * c(LINC00226, LINC00221) 0.285015246148429 10 0.0792022025507428 0.786716122004617 198 0.344026576578018 1 1 0 -7.0878391926972 LTS-038 chr14 107113859 107283157 169299 * character(0) NA 0 NA 0.707487727815977 73 0.26180359968828 2 NA NA -5.78613454148572 LTS-038 chr15 20169987 20446043 276057 * character(0) 0.409 1 NA 0.530369531374156 23 0.120635012844989 1 1 0 -5.77540015761956 LTS-038 chr15 20446044 22848321 2402278 * c(GOLGA8DP, POTEB, TUBGCP5, OR4N4, HERC2P3, GOLGA6L1, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.342463483200452 33 0.0883770760760819 0.694767381257084 315 0.5212442161485 1 1 0 -7.39919897896128 LTS-038 chr15 22848322 22926229 77908 * c(TUBGCP5, CYFIP1) 0.478 1 NA 0.714071904134603 101 0.179878842613027 2 2 0 -5.78248695489123 LTS-038 chr15 22926230 25583683 2657454 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-038 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, HERC2P7, MIR4508, NIPA1, PWAR1, CYFIP1, NPAP1, LOC283683, GOLGA8IP, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P2, GOLGA6L22, NDN, MAGEL2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 GOLGA8S, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, SNURF) 0.436815393748911 24 0.114266247695104 0.690888604779446 1281 0.240883463664362 2 1 1 -7.26462074379318 LTS-038 NA NA NA NA LTS-038 chr15 25583684 25583922 239 * UBE3A NA 0 NA 1.467 1 NA NA NA NA NA LTS-038 chr15 25583923 26093914 509992 * c(MIR4715, ATP10A, UBE3A) 0.431 1 NA 0.873293711954298 263 0.228902254525716 2 2 0 -5.81058128933635 LTS-038 chr15 26093915 28231916 2138002 * c(LOC100128714, MIR4715, GABRA5, GABRB3, GABRG3, OCA2, LINC00929, ATP10A) 0.451621712599147 13 0.0286689772473707 0.651522402752684 482 0.198584183943939 2 1 1 -7.88042672166501 LTS-038 chr15 28231917 28234715 2799 * OCA2 NA 0 NA 1.281 1 NA NA NA NA NA LTS-038 chr15 28234716 30337510 2102795 * c(LOC100289656, FAM189A1, APBA2, HERC2P9, WHAMMP2, OCA2, NSMCE3, PDCD6IPP2, TJP1, GOLGA6L7P, HERC2) 0.390486563513111 6 0.0925591702642153 0.78719957942679 1043 0.304685582167347 2 1 1 -6.93635578076989 LTS-038 chr15 30337511 30665383 327873 * c(DKFZP434L187, GOLGA8T, CHRFAM7A) NA 0 NA 0.519722825570529 65 0.294332194748357 1 NA NA -5.77039907922846 LTS-038 chr15 30665384 30700100 34717 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 1.233 1 NA NA NA NA NA LTS-038 chr15 30700101 32393601 1693501 * c(LOC100288637, CHRNA7, OTUD7A, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.447122897209366 20 0.106041650208526 0.784043601691662 787 0.324651723921279 2 1 1 -6.73660994588654 LTS-038 chr15 32393602 32403943 10342 * CHRNA7 NA 0 NA 0.454 1 NA NA NA NA NA LTS-038 chr15 32403944 32907940 503997 * c(WHAMMP1, LOC100996255, CHRNA7, GOLGA8O, ARHGAP11A) NA 0 NA 0.453215994347519 90 0.21765805713941 1 NA NA -5.98262026086862 LTS-038 chr15 32907941 35377492 2469552 * c(MIR1233-2, TMCO5B, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GREM1, FMN1, GOLGA8B, EMC4, ZNF770, NOP10, EMC7, AVEN, GJD2, RYR3, SCG5, ACTC1, KATNBL1, AQR, ARHGAP11A, SLC12A6) 0.432958009690491 81 0.0944415326348517 0.707357996506653 2618 0.314738875146301 2 1 1 -6.95557874069859 LTS-038 chr15 35377493 35385374 7882 * character(0) NA 0 NA 1.232 1 NA NA NA NA NA LTS-038 chr15 35385375 37402535 2017161 * c(MIR3942, DPH6-AS1, MIR4510, LOC145845, CSNK1A1P1, MEIS2, ANP32AP1, C15orf41, DPH6) 0.470434167415445 5 0.0367396243856684 1.00017877656253 386 0.307238446789329 2 1 1 -7.59705703995943 LTS-038 chr15 38228444 42565588 4337145 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, MIR4310, RAD51-AS1, RASGRP1, GPR176, CHP1, CHST14, OIP5, PLA2G4E, TMCO5A, SPRED1, EXD1, FSIP1, RHOV, BAHD1, MAPKBP1, RTF1, MGA, VPS39, PLA2G4F, TMEM87A, RPAP1, GCHFR, RPUSD2, FAM98B, PLA2G4D, EHD4, MRPL42P5, ITPKA, IVD, C15orf52, C15orf53, C15orf54, LTK, EIF2AK4, NDUFAF1, NUSAP1, SPTBN5, PLCB2, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, PAK6, KNL1, VPS18, RAD51, NA NA NA NA NA NA NA NA NA LTS-038 C15orf62, C15orf56, PHGR1, SPINT1, SRP14, MIR626, MIR627, BUB1B, THBS1, OIP5-AS1, TYRO3, CHAC1, ZFYVE19, DISP2, JMJD7-PLA2G4B, C15orf57, KNSTRN, BMF) 0.442931306473357 142 0.0706055493006658 0.768034206416739 6834 0.236869158722918 2 1 1 -6.80385449958253 LTS-038 NA NA NA NA LTS-038 chr15 42565589 42877858 312270 * c(LRRC57, GANC, TMEM87A, HAUS2, STARD9, ZNF106, CAPN3, SNAP23) NA 0 NA 0.726531924788549 719 0.213769207712411 2 NA NA -5.80097976264728 LTS-038 chr15 42877859 42927043 49185 * STARD9 NA 0 NA 0.286 1 NA NA NA NA NA LTS-038 chr15 42927044 42974689 47646 * STARD9 0.209 1 NA 0.51010469823616 99 0.108365775076813 1 1 0 -5.77633540323017 LTS-038 chr15 42974690 43852785 878096 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, PPIP5K1, LCMT2) 0.292925745086839 38 0.0845694517919261 0.50224439603908 2107 0.147297689915656 1 1 0 -6.94932376610398 LTS-038 chr15 43852786 43873176 20391 * PPIP5K1 NA 0 NA 0.089 1 NA NA NA NA NA LTS-038 chr15 43873177 44029055 155879 * c(CKMT1B, CATSPER2, STRC, CATSPER2P1, CKMT1A, PPIP5K1) 0.295680209719855 11 0.0539304265613662 0.343328940956246 417 0.208494130816326 1 1 0 -7.29950165808607 LTS-038 chr15 44029056 45060093 1031038 * c(MIR1282, SERF2-C15ORF63, SERF2, CASC4, TRIM69, PATL2, HYPK, PDIA3, MFAP1, CATSPER2P1, CTDSPL2, B2M, SERINC4, EIF3J-AS1, PIN4P1, WDR76, SPG11, ELL3, FRMD5, EIF3J) 0.237507599281631 14 0.0438579124391082 0.516014731526479 1468 0.183607963133598 1 1 0 -7.10914033118435 LTS-038 chr15 45060094 45117968 57875 * character(0) NA 0 NA 0.157 1 NA NA NA NA NA LTS-038 chr15 45117969 45139695 21727 * character(0) NA 0 NA 0.217612660002108 39 0.203819821332841 0 NA NA -5.79365753878593 LTS-038 chr15 45139696 45142487 2792 * character(0) NA 0 NA 0.477 1 NA NA NA NA NA LTS-038 chr15 45142488 45457634 315147 * c(TERB2, DUOXA2, DUOX2, DUOX1, SORD, DUOXA1) 0.378135061954487 23 0.0916961169603852 0.476252881970378 627 0.152326912352386 1 1 0 -7.62118669407662 LTS-038 chr15 45457635 49127134 3669500 * c(MIR147B, NA, DUT, FBN1, CEP152, BLOC1S6, GATM, HMGN2P46, SLC24A5, SHC4, CTXN2, MYEF2, DUOX1, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SHF, SLC28A2) 0.274938525376648 38 0.0645017229361776 0.546148787848579 2346 0.220597258589996 1 1 0 -6.73658060464848 LTS-038 chr15 49127135 49217233 90099 * c(EID1, SHC4) NA 0 NA 0.599167606501036 99 0.144593568820678 1 NA NA -5.78568266575799 LTS-038 chr15 49217234 49254615 37382 * SHC4 NA 0 NA 1.022 1 NA NA NA NA NA LTS-038 chr15 49254616 49285001 30386 * c(SHC4, SECISBP2L) 0.418 1 NA 0.809534376839776 115 0.413171133438974 2 2 0 -5.76442944323405 LTS-038 chr15 49285002 55722777 6437776 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, DYX1C1-CCPG1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, C15orf65, CYP19A1, DYX1C1, FAM227B, FGF7, DMXL2, AP4E1, GABPB1, LYSMD2, WDR72, GALK2, SCG3, TMOD3, TMOD2, HDC, ONECUT1, GLDN, USP50, TNFAIP8L3, UNC13C, MYO5A, RSL24D1, TRPM7, FLJ10038, MYO5C, MAPK6, FAM214A, DTWD1, RAB27A, MIR628, ATP8B4, SPPL2A, USP8, CCPG1, COPS2, NA NA NA NA NA NA NA NA NA LTS-038 PIGB, SECISBP2L) 0.436618719619945 77 0.0754293044688795 0.764262422341485 4618 0.293720418492208 2 1 1 -6.82608358227479 LTS-038 NA NA NA NA LTS-038 chr15 55722778 56689227 966450 * c(DYX1C1-CCPG1, DYX1C1, PYGO1, PRTG, TEX9, NEDD4, RFX7) 0.458744937103113 37 0.0323861600589413 0.689026427597936 1129 0.208773757845267 2 1 1 -7.11798500848395 LTS-038 chr15 56689228 56689234 7 * TEX9 NA 0 NA 0.872 1 NA NA NA NA NA LTS-038 chr15 56689235 57730708 1041474 * c(LOC145783, LINC00926, TEX9, ZNF280D, MNS1, TCF12, CGNL1) 0.336343586347252 3 0.0593548650070068 0.868860612305111 472 0.286307055757466 3 2 1 -7.29693379030225 LTS-038 chr15 57730709 58004436 273728 * c(MYZAP, GCOM1, POLR2M, CGNL1) 0.361357782167819 8 0.070175163494135 1.15682433125666 317 0.340081597080176 3 2 1 -6.78607289440952 LTS-038 chr15 58004437 58006653 2217 * c(GCOM1, POLR2M) NA 0 NA 0.981 1 NA NA NA NA NA LTS-038 chr15 58006654 59147120 1140467 * c(ADAM10, GCOM1, AQP9, LIPC, FAM63B, HSP90AB4P, POLR2M, ALDH1A2) 0.353027423654917 10 0.0519389599005944 0.881693338332368 652 0.226921352883308 3 2 1 -7.26660810988793 LTS-038 chr15 59147121 59956335 809215 * c(MIR2116, FAM81A, GTF2A2, MYO1E, FAM63B, RNF111, BNIP2, SLTM, CCNB2, GCNT3, LDHAL6B) 0.442673759151397 37 0.0369603512911818 0.762630835238567 1010 0.217089608923152 2 1 1 -6.75713848057975 LTS-038 chr15 59956336 59960177 3842 * BNIP2 NA 0 NA 0.921 1 NA NA NA NA NA LTS-038 chr15 59960178 63133119 3172942 * c(C2CD4A, MGC15885, FOXB1, ANXA2, C2CD4B, MIR190A, VPS13C, RORA, BNIP2, ICE2, TLN2) 0.439150423642104 21 0.106652975311789 0.904759335525607 1685 0.374184509182925 2 1 1 -6.93894496476844 LTS-038 chr15 63133120 66737121 3604002 * c(USP3-AS1, MIR1272, MIR4311, MIR4511, PDCD7, DENND4A, CLPX, LACTB, DIS3L, MTFMT, SLC51B, ZNF609, DAPK2, FBXL22, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, OAZ2, RPS27L, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, PPIB, DPP8, PARP16, TIPIN, MAP2K1, IGDCC4, SNX1, SCARNA14, TPM1, CA12, SNX22, PIF1, PLEKHO2, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, RAB11A, HERC1, SLC24A1, TRIP4, IGDCC3, KIAA0101, USP3) 0.448424972133993 79 0.0442138587263417 0.773913667423429 4816 0.250131763581089 2 1 1 -6.77106919814824 LTS-038 chr15 66737122 66745811 8690 * MAP2K1 NA 0 NA 1.125 1 NA NA NA NA NA LTS-038 chr15 66745812 72612241 5866430 * c(NR2E3, MIR548H4, MIR4312, IQCH-AS1, FEM1B, SNAPC5, CORO2B, SENP8, DRAIC, C15orf61, CT62, GRAMD2, LCTL, ITGA11, SPESP1, GLCE, EWSAT1, SKOR1, SMAD3, SMAD6, LINC00593, MYO9A, PKM, LRRC49, PAQR5, CLN6, ZWILCH, UACA, LARP6, MAP2K1, MAP2K5, THAP10, PARP6, SNORD16, SNORD18A, SNORD18B, SNORD18C, CELF6, RPL4, RPLP1, IQCH, MIR629, TLE3, NOX5, AAGAB, THSD4, ANP32A-IT1, ANP32A, PIAS1, CALML4, KIF23) 0.457437070068533 68 0.035757680584844 0.86238782093582 4503 0.764872842312627 2 1 1 -6.84115539622094 LTS-038 chr15 72612242 72612422 181 * CELF6 NA 0 NA 1.148 1 NA NA NA NA NA LTS-038 chr15 72612423 73735523 1123101 * c(HCN4, ADPGK-AS1, HIGD2B, ARIH1, REC114, HEXA, TMEM202, NEO1, GOLGA6B, BBS4, CELF6, MIR630, HEXA-AS1, ADPGK) 0.38083117408604 12 0.046946778377222 1.05014119558987 874 0.310455815303981 3 2 1 -6.73351409169285 LTS-038 chr15 73735524 73766356 30833 * REC114 NA 0 NA 1.07470108902006 7 0.120296459196595 3 NA NA -5.76508325818569 LTS-038 chr15 73766357 73832793 66437 * REC114 NA 0 NA 0.783 1 NA NA NA NA NA LTS-038 chr15 73832794 73925782 92989 * c(NPTN, REC114) 0.206 1 NA 0.792044853140161 77 0.208170823926845 2 2 0 -5.76450086896227 LTS-038 chr15 73925783 74220144 294362 * c(LOXL1-AS1, TBC1D21, C15orf59, LOXL1, CD276) 0.176077280506371 4 0.0729309033720731 0.70572427212432 223 0.162629891465838 2 2 0 -6.8426365638159 LTS-038 chr15 74220145 74234147 14003 * c(LOXL1-AS1, LOXL1) NA 0 NA 1.992 1 NA NA NA NA NA LTS-038 chr15 74234148 74536497 302350 * c(LOC283731, GOLGA6A, ISLR, LOXL1, PML, ISLR2, STRA6, CCDC33, STOML1) 0.120930644046496 5 0.0574412743591226 0.916936867031521 564 1.78083490764933 4 4 0 -6.75005500170717 LTS-038 chr15 74536498 74554725 18228 * CCDC33 NA 0 NA 0.69 1 NA NA NA NA NA LTS-038 chr15 74554726 78393362 3838637 * c(DNM1P35, MIR4313, MIR4513, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, ARID3B, CLK3, TMEM266, CSK, NRG4, CSPG4, CYP1A1, CYP1A2, CYP11A1, ODF3L1, SCAMP5, ETFA, TBC1D2B, LINGO1-AS1, SNX33, SIN3A, ULK3, FBXO22, MAN2C1, MPI, UBL7-AS1, SCAPER, RPP25, COMMD4, IMP3, C15orf39, FAM219B, PTPN9, CPLX3, RCN2, PPCDC, LOC645752, SH2D7, ISL2, GOLGA6C, GOLGA6D, FBXO22-AS1, MIR631, LOC729739, TYRO3P, NEIL1, LMAN1L, PEAK1, NA NA NA NA NA NA NA NA NA LTS-038 CCDC33, EDC3, LINC00597, SEMA7A, LINGO1, UBL7, PSTPIP1, LOC91450, UBE2Q2, COX5A) 0.158302048082806 44 0.0394991570012006 0.764554028682147 4160 0.340587721982736 2 2 0 -7.03322381954348 LTS-038 NA NA NA NA LTS-038 chr15 78393363 78393459 97 * SH2D7 NA 0 NA 0.658 1 NA NA NA NA NA LTS-038 chr15 78393460 79048821 655362 * c(CIB2, CHRNA3, CHRNA5, CHRNB4, HYKK, CRABP1, ACSBG1, IDH3A, IREB2, DNAJA4, PSMA4, SH2D7, LOC646938, WDR61) 0.173107422654007 18 0.0628804239204723 0.666854782248794 1117 0.24677752815477 2 2 0 -6.95763732712668 LTS-038 chr15 79048822 79054822 6001 * ADAMTS7 NA 0 NA 0.983 1 NA NA NA NA NA LTS-038 chr15 79054823 83215972 4161150 * c(NA, UBE2Q2P2, NA, ST20-MTHFS, MIR4514, MTHFS, MORF4L1, ADAMTS7, CTSH, CFAP161, FAH, MESDC2, KIAA1024, TMED3, ST20-AS1, LINC00927, SAXO2, TMC3, IL16, ANKRD34C, ADAMTS7P1, ST20, MIR184, GOLGA6L9, ZFAND6, CEMIP, ABHD17C, RASGRF1, MESDC1, BCL2A1, CPEB1, GOLGA6L10, MIR549A, ANKRD34C-AS1, EFL1, STARD5, MEX3B, ARNT2) 0.188419518482674 46 0.0594477198971179 0.782550444628395 2487 0.285494602447109 2 2 0 -6.74779220844486 LTS-038 chr15 83215973 83217314 1342 * CPEB1 NA 0 NA 0.546 1 NA NA NA NA NA LTS-038 chr15 83217315 85164129 1946815 * c(UBE2Q2L, LINC00933, MIR4515, C15orf40, WHAMM, FSD2, CPEB1-AS1, ACTG1P17, LOC338963, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, DNM1P41, LOC440300, HDGFRP3, BTBD1, TM6SF1, ZSCAN2, ADAMTSL3, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, EFTUD1P1, SCARNA15, AP3B2, FAM103A1, HOMER2) 0.157247073974984 16 0.0332685411963514 0.675440784845614 1333 0.210318254163425 2 2 0 -7.78738130182843 LTS-038 chr15 85164130 91565804 6401675 * c(MIR1276, MIR1179, PRC1-AS1, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, AKAP13, AGBL1, HAPLN3, MESP2, LINC00052, ACAN, FES, SEC11A, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, NTRK3-AS1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, HDDC3, GDPGP1, MIR7-2, MIR9-3, MAN2A2, MFGE8, TTLL13P, NMB, NTRK3, FURIN, NGRN, RHCG, PDE8A, PLIN1, POLG, SCAND2P, ZSCAN2, DET1, FANCI, MESP1, NA NA NA NA NA NA NA NA NA LTS-038 UNC45A, WDR93, ALPK3, RLBP1, BLM, LOC642423, KLHL25, AEN, CRTC3, MRPS11, AGBL1-AS1, WDR73, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SLC28A1, ZNF592) 0.171665287644706 152 0.0513690303033998 0.764278864144017 6198 0.266092777906118 2 2 0 -6.87684340295187 LTS-038 NA NA NA NA LTS-038 chr15 91565805 92397670 831866 * c(VPS33B, SLCO3A1, SV2B) 0.45 1 NA 0.687355227820809 267 0.215192091718158 2 2 0 -5.99810288509711 LTS-038 chr15 92397671 92432512 34842 * SLCO3A1 NA 0 NA 0.927323601665324 7 0.136010678852452 3 NA NA -5.78188835588605 LTS-038 chr15 92432513 92459249 26737 * SLCO3A1 NA 0 NA 1.741 1 NA NA NA NA NA LTS-038 chr15 92459250 92709186 249937 * SLCO3A1 0.379074344808276 13 0.0534818445110833 1.35037419193557 138 0.398784631503111 3 2 1 -6.79202894432544 LTS-038 chr15 92709187 92714901 5715 * SLCO3A1 NA 0 NA 0.616 1 NA NA NA NA NA LTS-038 chr15 92714902 95023625 2308724 * c(LINC00930, MIR3175, LINC01578, CHD2, C15orf32, SLCO3A1, FAM174B, MCTP2, RGMA, ASB9P1, ST8SIA2) 0.393956363544262 25 0.0741440040281973 1.04536879203198 1000 0.347702244592834 3 2 1 -6.75601657278109 LTS-038 chr15 96831249 96883431 52183 * c(MIR1469, NR2F2-AS1, NR2F2) 0.445 1 NA 1.63162572146857 137 0.411246041924675 5 5 0 -5.76485562835718 LTS-038 chr15 96883432 99192632 2309201 * c(SPATA8-AS1, SPATA8, FAM169B, NR2F2, ARRDC4, LINC00923) 0.45670857289574 26 0.0348966165430668 1.12229764840174 339 0.341696995211078 4 2 2 -7.05180476312919 LTS-038 chr15 99192633 99192788 156 * IGF1R NA 0 NA 3.611 1 NA NA NA NA NA LTS-038 chr15 99192789 99507561 314773 * c(MIR4714, IGF1R) 0.455745985956521 12 0.0303118888566946 1.55032196958805 296 0.507358260898068 6 3 3 -6.82591648659956 LTS-038 chr15 99507562 102516539 3008978 * c(FAM138E, LOC100507472, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, OR4F4, IGF1R, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, HSP90B2P, LRRK1, TM2D3) 0.457388693837814 89 0.0491266915045357 1.24826563679917 2463 0.403761566875629 4 2 2 -6.79114737601786 LTS-038 chr15 102516540 102516544 5 * WASH3P NA 0 NA 1.583 1 NA NA NA NA NA LTS-038 chr16 81704 81779 76 * character(0) 0.412 1 NA 0.671 1 NA NA NA NA NA LTS-038 chr16 81780 848294 766515 * c(LOC100134368, MIR3176, MIR5587, MSLN, STUB1, MRPL28, RPUSD1, WFIKKN1, CCDC78, PRR35, FBXL16, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, JMJD8, ARHGDIG, MPG, NME4, POLR3K, GNG13, LUC7L, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, PDIA2, FAM173A, CAPN15, MIR662, METRN, SNRNP25, NPRL3, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.347776038838553 100 0.0778312724404334 0.815465326577287 3075 0.265448111092393 3 2 1 -7.22248111862377 LTS-038 chr16 848295 848468 174 * GNG13 NA 0 NA 0.711 1 NA NA NA NA NA LTS-038 chr16 848469 1575244 726776 * c(TSR3, CLCN7, SSTR5-AS1, TPSD1, TPSG1, C16orf91, SOX8, PRR25, C1QTNF8, PTX4, GNG13, TPSB2, CCDC154, UNKL, LMF1, SSTR5, TPSAB1, UBE2I, GNPTG, CACNA1H, BAIAP3, IFT140, TELO2) 0.35509956318724 54 0.0870028012272228 0.729163131163075 1745 0.277150531054951 2 1 1 -7.35917279791849 LTS-038 chr16 1575245 2650483 1075239 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, TBL3, RNPS1, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, MEIOB, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, HAGH, IGFALS, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, MLST8, HS3ST6, LINC00254, ABCA17P, MRPS34, SNORA78, TSC2, SNHG9, NA NA NA NA NA NA NA NA NA LTS-038 CEMP1, TMEM204, C16orf59, FAHD1, TRAF7, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140) 0.36280735866749 49 0.094281051472004 0.828151750289471 3389 0.267316282014066 2 1 1 -7.16829847166827 LTS-038 NA NA NA NA LTS-038 chr16 2650484 2650491 8 * PDPK1 NA 0 NA 0.56 1 NA NA NA NA NA LTS-038 chr16 2650492 2732840 82349 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) NA 0 NA 0.528836465313343 137 0.273095106715868 1 NA NA -5.76517574965883 LTS-038 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.658 1 NA NA NA NA NA LTS-038 chr16 2747831 2790628 42798 * c(SRRM2-AS1, KCTD5, PRSS27) 0.36711635465839 3 0.0665507325278994 0.812093562471347 116 0.337633095195827 3 2 1 -6.76859299780566 LTS-038 chr16 2790629 2806401 15773 * c(SRRM2-AS1, SRRM2) NA 0 NA 1.511 1 NA NA NA NA NA LTS-038 chr16 2806402 2949417 143016 * c(PRSS21, FLYWCH2, ZG16B, PRSS30P, SRRM2, PRSS33, PRSS41, PRSS22, TCEB2) 0.415360066511443 14 0.0479081080109287 1.12559805615878 451 0.313164489159074 5 3 2 -6.82253773782879 LTS-038 chr16 2949418 3086725 137308 * c(LOC100128770, PAQR4, BICDL2, LINC00514, TNFRSF12A, HCFC1R1, THOC6, KREMEN2, FLYWCH1, CLDN6, CLDN9, PKMYT1) 0.342454500736479 10 0.0452795023529779 0.883571132050416 499 0.298274000761288 3 2 1 -7.13745197436292 LTS-038 chr16 3086726 3096930 10205 * c(LOC100128770, MMP25) NA 0 NA 0.536 1 NA NA NA NA NA LTS-038 chr16 3096931 3651079 554149 * c(MTRNR2L4, ZNF263, ZNF597, NLRC3, CLUAP1, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NAA60, ZNF205-AS1, SLX4, ZSCAN10, TIGD7, IL32) 0.393049245070414 19 0.0628733061925246 0.733779588372939 1377 0.218509335909437 2 1 1 -7.16519718064475 LTS-038 chr16 3651080 5083483 1432404 * c(LINC01569, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf71, DNASE1, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, NAGPA, PPL, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, SLX4, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.36159420273818 69 0.0693339614454466 0.874226285408132 2443 0.432869993738657 3 2 1 -6.92338885718922 LTS-038 chr16 5083484 5649187 565704 * c(NAGPA-AS1, C16orf89, EEF2KMT, NAGPA, ALG1) 0.458 1 NA 0.755674551871408 125 0.265931795282053 2 2 0 -5.77910579933041 LTS-038 chr16 5649188 16150229 10501042 * c(MIR365A, NPIPA5, MIR548X, MIR3180-4, MIR4718, RMI2, NTAN1, FOPNL, TEKT5, ABAT, EMP2, ERCC4, PDXDC1, CLEC16A, NOMO1, CARHSP1, MPV17L, TMEM186, RSL1D1, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, BCAR4, CIITA, ABCC1, MYH11, NUBP1, PARN, TXNDC11, BFAR, PMM2, RRN3, RBFOX1, NDE1, CPPED1, PRM1, PRM2, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, NPIPA3, TNP2, SHISA9, ABCC6P2, TVP23A, USP7, METTL22, ATF7IP2, NA NA NA NA NA NA NA NA NA LTS-038 SNN, PLA2G10, SOCS1, C16orf45, SNX29, NPIPA1, LITAF, KIAA0430) 0.430614211213272 110 0.0511293352597452 0.859598390981115 4618 0.285926166878849 2 1 1 -7.16886292020862 LTS-038 NA NA NA NA LTS-038 chr16 16150230 16161943 11714 * ABCC1 NA 0 NA 1.347 1 NA NA NA NA NA LTS-038 chr16 16161944 16278132 116189 * c(ABCC6, ABCC1) 0.323228632204308 6 0.0267911676988269 1.38673865221708 256 0.486507268185737 7 5 2 -6.81639954692068 LTS-038 chr16 16278133 19896627 3618495 * c(MIR3179-2, COQ7, IQCK, ITPRIPL2, SMG1, ARL6IP1, NOMO2, PKD1P1, ABCC6, KNOP1, NOMO3, GDE1, GPRC5B, SYT17, C16orf62, RPS15A, XYLT1, ABCC6P1, CLEC19A, TMC5, TMC7, CCP110) 0.43558205949791 25 0.0444530838825235 0.802044097177162 1780 0.283930943663069 2 1 1 -6.75970182976383 LTS-038 chr16 19896628 20015701 119074 * GPRC5B NA 0 NA 0.534 1 NA NA NA NA NA LTS-038 chr16 20015702 20557823 542122 * c(ACSM2A, GPR139, PDILT, GP2, ACSM2B, ACSM5, UMOD) 0.406662427230171 11 0.0722303134550736 0.606354806711424 472 0.17724785898532 2 1 1 -7.59475100588057 LTS-038 chr16 20557824 20559386 1563 * ACSM2B NA 0 NA 0.795 1 NA NA NA NA NA LTS-038 chr16 20559387 20952862 393476 * c(ERI2, ACSM1, DCUN1D3, ACSM2B, DNAH3, THUMPD1, LYRM1, ACSM3, LOC81691) 0.419571130366962 2 0.0799030662740799 0.791725093261366 556 0.27974266150521 2 1 1 -6.79292429025316 LTS-038 chr16 20952863 21273544 320682 * c(CRYM, ANKS4B, DNAH3, TMEM159, ZP2) 0.320803799295653 3 0.261851739221517 0.591819797078505 555 0.233184934475566 1 1 0 -6.77720363188215 LTS-038 chr16 21273545 21278921 5377 * CRYM NA 0 NA 0.696 1 NA NA NA NA NA LTS-038 chr16 21278922 23767556 2488635 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, SNX29P1, IGSF6, CDR2, ERN2, EARS2, CRYM, VWA3A, OTOA, GGA2, NPIPB3, PDZD9, EEF2K, SLC7A5P2, CRYM-AS1, NDUFAB1, METTL9, PLK1, POLR3E, UBFD1, USP31, SCNN1B, SCNN1G, CHP2, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, PALB2, DCTN5, COG7, HS3ST2) 0.434720588495721 45 0.0511506687061949 0.712479817464059 2585 0.230333508549315 2 1 1 -7.10329608003785 LTS-038 chr16 23767557 23767694 138 * CHP2 NA 0 NA 0.57 1 NA NA NA NA NA LTS-038 chr16 23767695 24374137 606443 * c(CACNG3, PRKCB, CHP2) 0.431053629028516 9 0.0487838201775047 0.598923697817607 316 0.240704565899791 2 1 1 -7.26087461054535 LTS-038 chr16 24374138 24551496 177359 * RBBP6 NA 0 NA 1.008 1 NA NA NA NA NA LTS-038 chr16 24551497 24837321 285825 * c(TNRC6A, RBBP6) 0.497 1 NA 0.799857698232705 413 0.333247199991563 2 2 0 -5.76441325210448 LTS-038 chr16 24837322 24922946 85625 * c(SLC5A11, TNRC6A) 0.466 1 NA 0.507660466678952 92 0.117193061095952 1 1 0 -5.78530177978276 LTS-038 chr16 24922947 24931471 8525 * c(SLC5A11, ARHGAP17) NA 0 NA 0.775 1 NA NA NA NA NA LTS-038 chr16 24931472 25137467 205996 * c(LCMT1, ARHGAP17, LOC554206) 0.446019050410424 4 0.0694286204193439 0.984362594821703 143 0.285421496062675 2 1 1 -6.79872612374991 LTS-038 chr16 25137468 25139775 2308 * LCMT1 NA 0 NA 0.7 1 NA NA NA NA NA LTS-038 chr16 25139776 27472786 2333011 * c(LCMT1-AS2, C16orf82, NSMCE1, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, FLJ21408, IL21R, LCMT1, KDM8, HS3ST4) 0.44308848216004 20 0.0378212903005701 0.644271414480473 618 0.181705437207705 2 1 1 -8.2414661996391 LTS-038 chr16 27472787 28608421 1135635 * c(SGF29, CLN3, GSG1L, XPO6, KIAA0556, IL27, NUPR1, GTF3C1, SBK1, APOBR, SULT1A2) 0.439550601823407 4 0.0235301225382841 0.774901412677217 983 0.271375488668491 2 1 1 -6.77227082389363 LTS-038 chr16 28608422 28616943 8522 * SULT1A1 NA 0 NA 0.219 1 NA NA NA NA NA LTS-038 chr16 28616944 28734890 117947 * SULT1A1 0.45962700477691 2 0.0325269119345812 0.468756436946637 87 0.194080127000005 0 0 0 -7.2290289850799 LTS-038 chr16 28734891 28834303 99413 * character(0) NA 0 NA 1.625 1 NA NA NA NA NA LTS-038 chr16 28834304 29814231 979928 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, ATXN2L, QPRT, SH2B1, LAT, C16orf54, KIF22, SNX29P2, SMG1P2, ATP2A1, SLX1A, BOLA2, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A3, TUFM, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19) 0.43165200795988 8 0.0456913167743219 0.728959161161409 1166 0.237230912841998 2 1 1 -6.86902091302494 LTS-038 chr16 29814232 29827217 12986 * c(SLX1B-SULT1A4, PRRT2, KIF22, MAZ, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) 0.454848124036187 2 0.0014142135623731 1.04206953464085 132 0.359473430259074 4 2 2 -13.9051743863908 LTS-038 chr16 29827218 30485615 658398 * c(SLX1B-SULT1A4, CD2BP2, CDIPT, CORO1A, TMEM219, C16orf92, SEPT1, ZNF48, ALDOA, SEPHS2, KCTD13, ASPHD1, TBC1D10B, SEZ6L2, INO80E, MYLPF, ITGAL, SMG1P2, CDIPT-AS1, SULT1A4, ZNF771, SLX1A, BOLA2, PPP4C, MAPK3, SMG1P5, LOC606724, LOC613037, LOC613038, TBX6, DCTPP1, GDPD3, PAGR1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.468216583338605 8 0.0322800247831379 0.795937355127733 1659 0.238421924117999 2 1 1 -7.03105503560081 LTS-038 chr16 30485616 30486654 1039 * ITGAL NA 0 NA 0.524 1 NA NA NA NA NA LTS-038 chr16 30486655 30532837 46183 * c(MIR4518, ITGAL) 0.456150985292233 3 0.0347706773014274 0.564940510932725 137 0.163683044023551 2 1 1 -6.91680679191201 LTS-038 chr16 30532838 31226215 693378 * c(MIR762, MIR4519, PYCARD-AS1, TMEM265, BCKDK, SRCAP, STX1B, ZNF689, ZNF785, ZNF688, PRSS36, CTF1, ZNF629, FUS, FBXL19-AS1, PYCARD, PRSS53, ITGAL, TRIM72, PHKG2, FBXL19, PRSS8, FBRS, ZNF747, SNORA30, STX4, LOC730183, PRR14, VKORC1, ZNF768, ZNF668, HSD3B7, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.435817720443236 49 0.0783392131242405 0.827722889150205 2563 0.252719338291307 2 1 1 -6.74934557484931 LTS-038 chr16 31226216 31227986 1771 * c(PYDC1, TRIM72) NA 0 NA 0.417 1 NA NA NA NA NA LTS-038 chr16 31227987 31437530 209544 * c(PYDC1, ITGAD, ITGAM, ITGAX, TRIM72) 0.461518661254719 6 0.0218997716883076 0.603464285926485 477 0.171897948633157 2 1 1 -7.37731609530995 LTS-038 chr16 31437531 31439021 1491 * ITGAD NA 0 NA 0.87 1 NA NA NA NA NA LTS-038 chr16 31439022 31927308 488287 * c(CLUHP3, ZNF267, ZNF720, COX6A2, ZNF843, YBX3P1, AHSP, C16orf58, SLC5A2, TGFB1I1, ARMC5) 0.442369979880517 18 0.040846916508291 0.738101411606484 620 0.236132882463939 2 1 1 -6.76787600740257 LTS-038 chr16 31927309 32890081 962773 * c(ZNF267, SLC6A10P, LOC390705, NA, TP53TG3D) 0.355 1 NA 0.710797831267234 43 0.318660143133253 2 2 0 -5.84080442394176 LTS-038 chr16 32890082 33961379 1071298 * c(SLC6A10P, LOC390705, LINC00273) 0.329515567187073 16 0.104795018170395 0.792328421347994 185 0.498521318318346 3 2 1 -7.06526789296836 LTS-038 chr16 33961380 33961395 16 * LINC00273 0.459 1 NA 2.456 1 NA NA NA NA NA LTS-038 chr16 33961396 33962379 984 * LINC00273 0.330483138070183 61 0.0862174877345474 1.72326241622442 84 0.919498147251951 19 13 6 -6.7351542027224 LTS-038 chr16 33962380 34257303 294924 * LINC00273 0.424063366416468 3 0.0733303029676909 0.656319466348323 47 0.243196891488362 2 1 1 -6.89425665798 LTS-038 chr16 34257304 34682380 425077 * c(LINC01566, UBE2MP1) NA 0 NA 0.684361516174652 101 0.220251827517395 2 NA NA -5.88739550199374 LTS-038 chr16 46508169 46614595 106427 * c(ANKRD26P1, SHCBP1) 0.432 1 NA 0.708419080943964 103 0.283690851356449 2 2 0 -5.77580948626129 LTS-038 chr16 46614596 55364459 8749864 * c(LINC00919, LOC100507577, MIR548AE2, IRX5, DNAJA2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, ORC6, CNEP1R1, TOX3, BRD7, C16orf87, C16orf97, PHKB, HEATR3, VPS35, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, SIAH1, FTO, IRX6, IRX3, SHCBP1, CHD9, ITFG1, NETO2, LONP2, GPT2, ABCC11, NKD1, CBLN1, MYLK3, ABCC12, N4BP1) 0.435826838443895 74 0.103144816653662 0.780055256522139 4253 0.265294964832999 2 1 1 -6.77908938030129 LTS-038 chr16 55364460 55540067 175608 * c(MMP2, IRX6) NA 0 NA 0.717967513898437 95 0.151123498365141 2 NA NA -5.81637199840581 LTS-038 chr16 55540068 55540070 3 * MMP2 NA 0 NA 0.541 1 NA NA NA NA NA LTS-038 chr16 55540071 55620291 80221 * c(MMP2, LPCAT2, CAPNS2) 0.183 1 NA 0.619264363053875 172 0.220351404713802 1 1 0 -5.77957839788514 LTS-038 chr16 55620292 58312608 2692317 * c(MIR3935, KATNB1, CES1, CETP, NUDT21, CNGB1, CSNK2A2, CPNE2, ADGRG5, CES5A, ADGRG3, ARL2BP, DKFZP434H168, AMFR, GNAO1, LOC283856, CCDC113, CFAP20, MT1DP, TEPP, KIFC3, LOC388282, CES1P2, MIR138-2, MMP15, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, PLLP, CES1P1, POLR2C, LPCAT2, OGFOD1, DOK4, COQ9, CIAPIN1, ZNF319, BBS2, CCL17, CCL22, CX3CL1, MT1IP, SLC6A2, SLC12A3, NA NA NA NA NA NA NA NA NA LTS-038 USB1, FAM192A, NLRC5, DRC7, MT4, RSPRY1, ADGRG1, CCDC102A, NUP93, HERPUD1) 0.259444544552292 51 0.0765965135130375 0.558028791332652 3706 0.170345359726806 1 1 0 -6.76616970961271 LTS-038 NA NA NA NA LTS-038 chr16 58312609 58318574 5966 * c(PRSS54, CCDC113) 0.258143746829879 12 0.0548615336897163 0.363604186675172 95 0.104056537737485 1 1 0 -6.81596964670845 LTS-038 chr16 58318575 58318604 30 * PRSS54 0.291 1 NA 0.795 1 NA NA NA NA NA LTS-038 chr16 58318605 68598227 10279623 * c(CDH5, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, CTCF, CMTM1, NRN1L, CMTM3, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, CTRL, DYNC1LI2, AGRP, E2F4, PRSS54, CNOT1, CES3, EDC4, PLA2G15, PLEKHG4, LRRC29, GOT2, TERB1, CES4A, EXOC3L1, LINC00922, TMEM208, FHOD1, ZDHHC1, HSD11B2, HSF4, C16orf86, LCAT, MIR328, NFATC3, PARD6A, CKLF, FAM96B, TPPP3, PRMT7, DUS2, SLC38A7, LRRC36, FBXL8, SMPD3, DDX28, NA NA NA NA NA NA NA NA NA LTS-038 TSNAXIP1, PSKH1, PSMB10, THAP11, PDP2, RANBP10, RRAD, DPEP2, DPEP3, APOOP5, GINS3, NDRG4, ACD, KIAA0895L, SLC9A5, SLC12A4, SNORA46, SNORA50A, TK2, CA7, FAM65A, ELMO3, SETD6, ESRP2, CENPT, C16orf70, GFOD2, ENKD1, SLC7A6OS, B3GNT9, CBFB, TRADD, CES2, NAE1, NOL3, SLC7A6, ATP6V0D1) 0.273217728093054 47 0.060027368102967 0.539810951606344 6351 1.00795041125901 1 1 0 -6.73577123667672 LTS-038 NA NA NA NA LTS-038 chr16 68598228 68598448 221 * ZFP90 NA 0 NA 0.876 1 NA NA NA NA NA LTS-038 chr16 68598449 70691082 2092634 * c(CDH3, SNORD111B, MIR1538, MIR1972-1, SMG1P7, LOC100506083, NFAT5, WWP2, DDX19B, EXOSC6, ZFP90, IL34, TMED6, AARS, NQO1, FUK, SF3B3, COG4, VPS4A, PDXDC2P, CLEC18C, NOB1, HAS3, CLEC18A, MIR140, NIP7, CHTF8, PDPR, DDX19A, PDF, ST3GAL2, SNTB2, SNORD111, TERF2, TANGO6, CYB5B, COG8, UTP4, CDH1) 0.218955292634491 28 0.0962306188828795 0.745329892921673 2839 0.266344058132722 2 2 0 -6.8903258486279 LTS-038 chr16 70691083 70693499 2417 * IL34 NA 0 NA 0.9 1 NA NA NA NA NA LTS-038 chr16 70693500 70726795 33296 * c(IL34, VAC14, MTSS1L) 0.174795914104105 4 0.0437978309965231 0.846494936368676 120 0.256061868836945 2 2 0 -6.76650911404078 LTS-038 chr16 70726796 70884524 157729 * c(VAC14-AS1, HYDIN, VAC14) 0.477 1 NA 0.913400384377983 187 0.343923502034343 2 2 0 -5.77877662404302 LTS-038 chr16 70884525 71167220 282696 * HYDIN 0.401987583903358 79 0.0450593751603477 0.852893914085712 548 0.221405661753577 3 2 1 -7.02527612524745 LTS-038 chr16 71167221 71218926 51706 * HYDIN 0.219 1 NA 0.731565273258221 31 0.143450594694757 2 2 0 -5.77601634542927 LTS-038 chr16 71218927 71318640 99714 * c(HYDIN, CMTR2) 0.155 1 NA 0.806123365537012 67 0.192279113139248 2 2 0 -5.76454780710295 LTS-038 chr16 71318641 72122970 804330 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, TXNL4B, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, MARVELD3, IST1) 0.162751352601872 22 0.0777038026893211 0.698209760945841 1328 0.249637516016982 2 2 0 -6.9187661785714 LTS-038 chr16 72122971 74341902 2218932 * c(LINC01568, HCCAT5, ZFHX3, TXNL4B, PSMD7, PMFBP1, DHX38) 0.159743937196943 7 0.0573460672459013 0.849416392878101 782 0.282071983975389 2 2 0 -6.90999456072099 LTS-038 chr16 74341903 74341999 97 * character(0) NA 0 NA 0.593 1 NA NA NA NA NA LTS-038 chr16 74342000 74387789 45790 * LOC283922 0.230520523689892 2 0.140714249456123 0.573542005699163 125 0.226281673740866 1 1 0 -6.78126579565739 LTS-038 chr16 74387790 74394504 6715 * LOC283922 NA 0 NA 1.129 1 NA NA NA NA NA LTS-038 chr16 74394505 81077017 6682513 * c(SYCE1L, MIR4719, CLEC3A, CFDP1, GABARAPL2, CDYL2, TMEM170A, CTRB1, ZFP1, ADAMTS18, LDHD, MLKL, MON1B, ATMIN, ADAT1, CHST5, GLG1, LOC283922, NUDT7, KARS, MAF, CHST6, CTRB2, CLEC18B, WWOX, TERF2IP, RFWD3, CENPN, CMC2, VAT1L, FA2H, TMEM231, WDR59, DYNLRB2, ZNRF1, CNTNAP4, BCAR1) 0.199160531766444 58 0.0662962539283818 0.762139311871803 2537 0.306949309452642 2 2 0 -6.85235561142718 LTS-038 chr16 81077018 81077101 84 * ATMIN NA 0 NA 0.409 1 NA NA NA NA NA LTS-038 chr16 81077102 81412657 335556 * c(PKD1L2, C16orf46, ATMIN, GCSH, BCO1, GAN) 0.207140973713236 51 0.074452200747046 0.636967923422498 582 0.246103413190654 2 2 0 -6.95115621082226 LTS-038 chr16 81412658 81412756 99 * GAN NA 0 NA 0.709 1 NA NA NA NA NA LTS-038 chr16 81412757 90109711 8696955 * c(VPS9D1-AS1, LOC100129617, URAHP, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR5093, MIR5189, CDH13, CDH15, MPHOSPH6, EMC8, TUBB3, RNF166, DNAAF1, SPATA2L, SPATA33, ZC3H18, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CYBA, ZFPM1, ADAD2, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, ZNF778, ACSF3, FANCA, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, COTL1, MLYCD, GALNS, GAS8, CPNE7, IL17C, LINC00304, NA NA NA NA NA NA NA NA NA LTS-038 ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MC1R, MVD, CHMP1A, GINS2, TRAPPC2L, PLCG2, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, JPH3, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, HSDL1, CRISPLD2, SPIRE2, ZNF469, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 CENPBD1, ZNF276, KCNG4, SDR42E1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.167151084526319 237 0.050617757453913 0.761324587106174 7607 0.293883030322008 2 2 0 -6.94260990103597 LTS-038 NA NA NA NA LTS-038 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.626406630764898 119 0.214186389125048 1 NA NA -5.77672643174587 LTS-038 chr17 6004 6115 112 * DOC2B 0.106 1 NA 1.63889245187787 3 1.09504535674708 5 5 0 -5.76441029362814 LTS-038 chr17 6116 973355 967240 * c(DBIL5P, MIR3183, LOC100506388, ABR, TIMM22, RFLNB, C17orf97, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A, DOC2B, RPH3AL) 0.117035034077375 28 0.0286776234136667 1.16444057098256 803 0.39779255944735 4 4 0 -6.7874258264137 LTS-038 chr17 973356 975782 2427 * ABR NA 0 NA 0.898 1 NA NA NA NA NA LTS-038 chr17 975783 1731341 755559 * c(PITPNA-AS1, PRPF8, SMYD4, SLC43A2, WDR81, CRK, TUSC5, ABR, MIR22, MYO1C, SERPINF1, INPP5K, PITPNA, SERPINF2, BHLHA9, TLCD2, YWHAE, RILP, MIR22HG, SCARF1) 0.152039838090278 46 0.0396537002312393 0.877778013342918 1513 0.465483275002098 3 3 0 -6.84838407710918 LTS-038 chr17 1731342 1733265 1924 * SMYD4 NA 0 NA 1.209 1 NA NA NA NA NA LTS-038 chr17 1733266 2966954 1233689 * c(MIR1253, OVCA2, RTN4RL1, DPH1, RAP1GAP2, CLUH, SMG6, LOC284009, HIC1, MIR132, MIR212, MNT, PAFAH1B1, TSR1, RPA1, SRR, SNORD91A, SNORD91B, METTL16, OR1D5, SGSM2) 0.176559684226009 34 0.118573908748962 1.15998705832917 1251 0.433319154108546 3 3 0 -6.82606150590252 LTS-038 chr17 2966955 2995276 28322 * character(0) NA 0 NA 0.696 1 NA NA NA NA NA LTS-038 chr17 2995277 3324810 329534 * c(OR1A2, OR3A4P, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1E1, OR1G1, OR3A3) 0.134415162288917 13 0.0257492842818134 0.723448858476844 219 0.326487039400087 3 3 0 -7.01583521441045 LTS-038 chr17 3324811 3324898 88 * OR3A3 NA 0 NA 0.843 1 NA NA NA NA NA LTS-038 chr17 3324899 3646891 321993 * c(P2RX5-TAX1BP3, CTNS, TRPV3, SHPK, TAX1BP3, ITGAE, ASPA, P2RX5, TRPV1, EMC6, OR1E2, GSG2, SPATA22) 0.124854824921717 37 0.042698010727903 0.992956690341909 852 0.379372073236748 3 3 0 -6.81871281634865 LTS-038 chr17 3646892 3648983 2092 * ITGAE NA 0 NA 1.093 1 NA NA NA NA NA LTS-038 chr17 3648984 5487164 1838181 * c(C17orf107, LOC100130950, LOC101559451, MYBBP1A, KIF1C, CHRNE, CYB5D2, ZFP3, GGT6, SPNS2, SPNS3, ENO3, NLRP1, CAMTA2, ZZEF1, ALOX15, RNF167, PELP1, GP1BA, VMO1, SMTNL2, ITGAE, GLTPD2, INCA1, SCIMP, MED11, ARRB2, ATP2A3, NUP88, P2RX1, MINK1, DERL2, ANKFY1, PFN1, PLD2, SLC52A1, NCBP3, DHX33, PSMB6, CXCL16, C1QBP, LOC728392, UBE2G1, ZNF232, MIS12, SLC25A11, ZMYND15, CAMKK1, RPAIN, ZNF594, TM4SF5, USP6, NA NA NA NA NA NA NA NA NA LTS-038 RABEP1, SPAG7) 0.127056607335195 123 0.0462617819841 1.11864975610566 4137 0.36828964176535 3 3 0 -6.81685208699271 LTS-038 NA NA NA NA LTS-038 chr17 5487165 5487316 152 * NLRP1 NA 0 NA 1.55273817987261 3 0.132213211644424 5 NA NA -5.76441013594599 LTS-038 chr17 5487317 5983964 496648 * c(NLRP1, WSCD1, LOC339166) NA 0 NA 0.816 1 NA NA NA NA NA LTS-038 chr17 5983965 5991344 7380 * WSCD1 0.25 1 NA 0.553269810284984 11 0.103816971812723 1 1 0 -5.7644613799484 LTS-038 chr17 5991345 10212690 4221346 * c(LOC100128288, MIR4314, NA, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, CLEC10A, CHD3, SAT2, GABARAP, CHRNB1, CNTROB, RPL29P2, CYB5D1, USP43, KRBA2, CLDN7, DNAH2, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, MFSD6L, SLC16A11, FBXO39, DLG4, DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, FGF11, ARHGEF15, KDM6B, WSCD1, CTDNEP1, PIK3R5, ELP5, AIPL1, NA NA NA NA NA NA NA NA NA LTS-038 ALOX12, ALOX12B, ALOX12P2, ALOX15B, TMEM256, BCL6B, SENP3, SNORA67, LOC284023, LINC00324, SLC13A5, TMEM102, GPS2, RANGRF, GUCY2D, TMEM95, ACADVL, SPEM1, SPDYE4, SLC25A35, TNFSF12-TNFSF13, ASGR1, ASGR2, MIR324, MYH10, ATP1B2, MED31, YBX2, PER1, PFAS, POLR2A, FAM64A, XAF1, BORCS6, WRAP53, PLSCR3, MIR497, NLGN2, ZBTB4, TRAPPC1, ALOXE3, RCVRN, RPL26, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, SOX15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 SCARNA21, VAMP2, TP53, PHF23, CTC1, NDEL1, PITPNM3, TEKT1, TMEM107, NAA38, NEURL4, HES7, TXNDC17, GAS7, TNK1, MYH13, TNFSF13, TNFSF12, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, FXR2, MPDU1, CD68, ACAP1, KIAA0753) 0.185868897795797 183 0.0555178386551145 0.784665768597788 8010 0.24944776044202 2 2 0 -6.7459781184486 LTS-038 NA NA NA NA LTS-038 chr17 10212691 15406489 5193799 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, COX10, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, PMP22, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, MYH13, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.184510161387746 46 0.0600393148168056 0.690051778928257 2966 0.238380153880264 2 2 0 -7.72307835799482 LTS-038 chr17 15406490 15440242 33753 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.424 1 NA NA NA NA NA LTS-038 chr17 15440243 15669121 228879 * c(TVP23C-CDRT4, TRIM16, TVP23C, TBC1D26, CDRT1, ZNF286A, CDRT15P2) 0.266010789247828 21 0.0922818921514271 0.593592066761091 556 0.526692718590811 1 1 0 -6.73748198577252 LTS-038 chr17 15669122 15688148 19027 * character(0) NA 0 NA 0.748 1 NA NA NA NA NA LTS-038 chr17 15688149 18315303 2627155 * c(FAM106CP, MIR1288, PEMT, RAI1, LRRC75A-AS1, ZSWIM7, MIEF2, ADORA2B, SMCR5, SMCR8, NA, TOM1L2, USP32P1, DRG2, CENPV, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, SNORD49A, LRRC75A, LLGL1, KRT16P2, MEIS3P1, MYO15A, TRPV2, RASD1, ALKBH5, TTC19, MED9, NT5M, ZNF287, ZNF624, EVPLL, SHMT1, SREBF1, SNORD49B, SNORD65, MIR33B, TOP3A, UBB, GID4, DRC3, COPS3, ATPAF2, PIGL, NCOR1, CCDC144A) 0.183376618190144 48 0.0674558661865573 0.788152936658555 3734 0.269972777641575 2 2 0 -6.73721634791865 LTS-038 chr17 18315304 18315317 14 * character(0) NA 0 NA 0.298 1 NA NA NA NA NA LTS-038 chr17 18315318 18456685 141368 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.177 1 NA 0.174762472940434 70 0.214732302890743 0 0 0 -6.23342162736064 LTS-038 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.809 1 NA NA NA NA NA LTS-038 chr17 18483256 18786021 302766 * c(FBXW10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, PRPSAP2, ZNF286B) 0.299193838335966 6 0.175939383500871 0.598484431924979 505 0.373601763911521 1 1 0 -6.75987713233043 LTS-038 chr17 18786022 18793061 7040 * PRPSAP2 NA 0 NA 0.948 1 NA NA NA NA NA LTS-038 chr17 18793062 21117589 2324528 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, PRPSAP2, FAM83G, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.160186890334555 31 0.0839463218148154 0.788377221215002 2107 0.335823715671786 2 2 0 -6.78713814514581 LTS-038 chr17 21117590 21194769 77180 * c(NATD1, MAP2K3, TMEM11) 0.321 1 NA 0.770530954441685 33 0.261345440736852 2 2 0 -5.76528541754149 LTS-038 chr17 21194770 21202223 7454 * MAP2K3 0.324748101567797 11 0.0575645092680614 0.715815713950272 32 0.265817331697249 4 3 1 -6.81381603273646 LTS-038 chr17 21202224 21202237 14 * MAP2K3 0.409 1 NA 1.063 1 NA NA NA NA NA LTS-038 chr17 21202238 21320365 118128 * c(KCNJ12, MAP2K3) 0.332671294168072 88 0.0625783145709874 1.10814815704521 209 0.49553635513473 4 3 1 -6.84190360683929 LTS-038 chr17 21320366 21320422 57 * KCNJ12 NA 0 NA 0.607 1 NA NA NA NA NA LTS-038 chr17 21320423 22066835 746413 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12) 0.360926220631212 8 0.115532308406412 0.746976603790544 205 0.31086018407176 2 1 1 -7.05502869414829 LTS-038 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.883 1 NA NA NA NA NA LTS-038 chr17 25620838 25887571 266734 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.296 1 NA 0.881793448685024 81 0.243636911721287 2 2 0 -5.79069008312141 LTS-038 chr17 25887572 33328327 7440756 * c(MIR365B, MIR3184, SPAG5-AS1, AA06, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4723, MIR4725, NARR, SPAG5, CCT6B, SLC46A1, LRRC37B, ABHD15, TLCD1, TMEM132E, SPACA3, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, TMEM199, PROCA1, DHRS13, LRRC37BP1, RHBDL3, LYRM9, EVI2A, EVI2B, ALDOC, SARM1, FLOT2, SUZ12, PPY2P, PYY2, TMEM98, POLDIP2, TBC1D29, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, NA NA NA NA NA NA NA NA NA LTS-038 NEK8, GIT1, EFCAB5, TMIGD1, LGALS9, LIG3, MYO18A, ASIC2, C17orf102, MIR144, MIR193A, SUZ12P1, MYO1D, NF1, NOS2, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, NLK, RHOT1, COPRS, FAM222B, ADAP2, UTP6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, SDF2, C17orf75, BLMH, SH3GL1P1, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, MIR632, TNFAIP1, VTN, ZNF207, TEFM, ATAD5, RAB34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 NSRP1, RNF135, RAB11FIP4, FOXN1, CORO6, SSH2, KSR1, CDK5R1, TP53I13, IFT20, SLC13A2, UNC119, ZNF830, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.180331061534385 100 0.0546299802990514 0.793188422594227 8225 0.269029449865306 2 2 0 -6.74040636580603 LTS-038 NA NA NA NA LTS-038 chr17 33328328 34945867 1617540 * c(SLFN12L, RAD51L3-RFFL, RFFL, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, PIGW, SLFN14, CCL15-CCL14, CCL4L1, LIG3, TBC1D3B, TBC1D3C, CCL3L3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL3L1, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, NA, SNORD7, TBC1D3H, MMP28, GGNBP2, MYO19, TAF15, SLFN11, RASL10B, ZNHIT3) 0.193498345545476 34 0.0593317285328448 0.693746740416719 2308 0.279420780718388 2 2 0 -6.98246163725451 LTS-038 chr17 34945868 39316500 4370633 * c(LOC100131347, KRTAP4-9, KRTAP4-7, C17orf96, MIR2909, LINC00672, LRRC3C, MIR4728, MIR4726, MIR4734, MIR4727, SNORD124, STARD3, DDX52, DUSP14, SYNRG, CCR7, ZPBP2, GJD3, KRT222, KRT40, CSF3, WIPF2, KRT25, TMEM99, KRT28, KRT24, ERBB2, CASC3, IKZF3, KRT23, AATF, C17orf78, YWHAEP7, CISD3, GSDMA, GRB7, SOCS7, ACACA, MSL1, KRT27, LRRC37A11P, STAC2, IGFBP4, KRT26, KRT10, KRT12, C17orf98, ARL5C, KRT39, LASP1, NA NA NA NA NA NA NA NA NA LTS-038 LHX1, MLLT6, LOC440434, GPR179, NEUROD2, FBXO47, RAPGEFL1, CDK12, PNMT, KRT20, MED1, CWC25, GSDMB, PSMB3, PSMD3, PLXDC1, ARHGAP23, RARA, RPL19, SNORA21, KRTAP4-11, SMARCE1, TADA2A, HNF1B, THRA, TOP2A, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP2-3, PCGF2, CACNB1, DHRS11, GGNBP2, MRM1, SRCIN1, KRTAP1-3, KRTAP1-1, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, PIP4K2B, PPP1R1B, MIEN1, MRPL45, KRTAP4-4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 TNS4, FBXL20, KRTAP4-5, KRTAP3-3, KRTAP2-4, TCAP, PGAP3, RPL23, ORMDL3, NR1D1, MED24, CDC6) 0.165889333880972 157 0.0523400684933068 0.799606718488556 7534 0.312598247924712 2 2 0 -6.81208030150379 LTS-038 NA NA NA NA LTS-038 chr17 39316501 39316581 81 * KRTAP4-4 NA 0 NA 0.63 1 NA NA NA NA NA LTS-038 chr17 39316582 39471452 154871 * c(KRTAP9-7, KRTAP16-1, KRTAP9-6, KRTAP29-1, KRTAP9-1, KRTAP9-9, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-3, KRTAP4-2) 0.315208186745326 8 0.0503409801822957 0.67323496050217 225 0.312067181666089 4 3 1 -7.13870412734725 LTS-038 chr17 39471453 39471513 61 * KRTAP17-1 NA 0 NA 1.188 1 NA NA NA NA NA LTS-038 chr17 39471514 40841031 1369518 * c(LOC100505782, MIR5010, EIF1, P3H4, NT5C3B, CNP, LINC00974, FAM134C, ZNF385C, KCNH4, GAST, KAT2A, TUBG2, CCR10, KRT42P, PTRF, NKIRAS2, PSMC3IP, HCRT, KLHL10, HSD17B1, JUP, KRT9, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, NAGLU, ACLY, ATP6V0A1, KLHL11, RAB5C, FKBP10, STAT3, STAT5A, STAT5B, MLX, DNAJC7, TUBG1, DHX58, PLEKHH3, COASY, TTC25, KRTAP17-1, GHDC, NA NA NA NA NA NA NA NA NA LTS-038 CNTNAP1, KRT38, KRT37, KRT36, HAP1, HSPB9) 0.137988460866394 64 0.0513709060663657 0.838826015579529 3402 0.271826178702146 2 2 0 -7.22435615786989 LTS-038 NA NA NA NA LTS-038 chr17 40841032 41601207 760176 * c(LINC00910, RAMP2-AS1, MIR2117, LINC00854, PTGES3L, PTGES3L-AARSD1, PSME3, NBR2, RAMP2, VAT1, TMEM106A, CNTD1, RUNDC1, DHX8, EZH1, G6PC, COA3, AOC2, IFI35, ARL4D, LINC00671, NBR1, RPL27, WNK4, BRCA1, AARSD1, RND2, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.197372628256683 35 0.105996773377243 0.743760999527077 1615 0.280878020110416 2 2 0 -6.77042346774927 LTS-038 chr17 41601208 41603861 2654 * DHX8 NA 0 NA 1.177 1 NA NA NA NA NA LTS-038 chr17 41603862 44273859 2669998 * c(MAP3K14-AS1, HDAC5, GJC1, HEXIM1, C1QL1, RUNDC3A, PLCD3, SPATA32, HEXIM2, LSM12, CCDC43, CD300LG, KIF18B, NAGS, DHX8, DUSP3, ETV4, GPATCH8, FAM215A, FZD2, GFAP, C17orf105, FAM171A2, MEIOC, GRN, ASB16-AS1, ITGA2B, CCDC103, ADAM11, MEOX1, MPP2, MPP3, NMT1, SOST, SLC25A39, HIGD1B, PPY, PYY, ATXN7L3, SLC4A1, UBTF, FMNL1, C17orf53, TMUB2, ACBD4, DCAKD, DBF4B, TMEM101, MAP3K14, G6PC3, ASB16, EFTUD2 NA NA NA NA NA NA NA NA NA LTS-038 ) 0.170272910848199 73 0.0527711415358379 0.813244483690644 3997 0.369433670763591 2 2 0 -6.78326576670515 LTS-038 NA NA NA NA LTS-038 chr17 44273860 44430248 156389 * character(0) NA 0 NA 0.277914866631512 45 0.131457025278033 0 NA NA -5.78484130366251 LTS-038 chr17 44430249 44552561 122313 * character(0) NA 0 NA 0.924 1 NA NA NA NA NA LTS-038 chr17 44552562 45197296 644735 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.183442378275332 5 0.0330348301039978 0.771817350450432 282 0.272219143931889 2 2 0 -6.74050216488743 LTS-038 chr17 45197297 45214473 17177 * CDC27 0.353 1 NA 0.694448582484337 45 0.14404568228815 2 2 0 -5.77411464929639 LTS-038 chr17 45214474 45266571 52098 * CDC27 0.378457754844508 21 0.0897488028836464 1.05540292714415 97 0.360611483410268 3 2 1 -6.73311585648767 LTS-038 chr17 45266572 45331358 64787 * c(ITGB3, MYL4, CDC27) 0.174 1 NA 1.06094819804664 41 0.272709791697704 3 3 0 -5.76446312159862 LTS-038 chr17 45331359 45810994 479636 * c(EFCAB13, TBX21, ITGB3, KPNB1, MRPL45P2, NPEPPS, TBKBP1) 0.14684846575321 5 0.082300060753319 0.805876124752945 612 0.272879702813273 2 2 0 -6.85963958994678 LTS-038 chr17 45810995 45810997 3 * TBX21 NA 0 NA 0.389 1 NA NA NA NA NA LTS-038 chr17 45810998 45925744 114747 * c(OSBPL7, MRPL10, TBX21, SP6, LRRC46, SCRN2) 0.266867820219849 8 0.0801702429654723 0.573122746852989 351 0.138546973971805 1 1 0 -6.74171074301384 LTS-038 chr17 45925745 45925769 25 * SP6 NA 0 NA 1.104 1 NA NA NA NA NA LTS-038 chr17 45925770 46801774 876005 * c(MIR1203, MIR3185, HOXB-AS1, CBX1, SNX11, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, COPZ2, PNPO, SP2, PRR15L, CDK5RAP3, SP6, PRAC1, SKAP1) 0.149790415727907 12 0.0620407979160536 0.86930841518322 1064 0.324194113668973 3 3 0 -6.91969108447585 LTS-038 chr17 46801775 47210527 408753 * c(MIR3185, CALCOCO2, HOXB13, IGF2BP1, SNF8, B4GALNT2, GIP, TTLL6, PRAC2, ATP5G1, UBE2Z) 0.180499183740412 5 0.105916476527498 0.721959429701502 730 0.244295341362409 2 2 0 -6.77578355871773 LTS-038 chr17 47210528 47218586 8059 * B4GALNT2 NA 0 NA 0.368 1 NA NA NA NA NA LTS-038 chr17 47218587 47243621 25035 * B4GALNT2 NA 0 NA 0.444150685513534 41 0.0895667417042297 1 NA NA -5.84473058302745 LTS-038 chr17 47243622 47245990 2369 * B4GALNT2 NA 0 NA 0.946 1 NA NA NA NA NA LTS-038 chr17 47245991 49231708 1985718 * c(TOB1, SLC35B1, CHAD, KAT7, NXPH3, WFIKKN2, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, CACNA1G-AS1, TAC4, GNGT2, LOC284080, ITGA3, HILS1, TOB1-AS1, NGFR, NME1, ABI3, MRPL27, PDK2, LUC7L3, PHB, LINC00483, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, NME1-NME2, FLJ45513, ACSF2, FAM117A, SPOP, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, SPAG9, ANKRD40) 0.162087866950274 86 0.0486698880493471 0.856527847229499 3838 0.273440773193901 2 2 0 -6.94004956148458 LTS-038 chr17 49231709 55198731 5967023 * c(TOM1L1, MIR3614, C17orf112, COX11, ANKFN1, MMD, MTVR2, STXBP4, HLF, C17orf67, RNF126P1, NME1, NME2, UTP18, MBTD1, TMEM100, CA10, PCTP, SCPEP1, NME1-NME2, TRIM25, COIL, AKAP1, KIF2B, DGKE, NOG) 0.193798133448726 28 0.046856346376635 0.767099361293203 1423 0.223845721594437 2 2 0 -6.86845742235942 LTS-038 chr17 55198732 55334351 135620 * MSI2 NA 0 NA 1.895 1 NA NA NA NA NA LTS-038 chr17 55334352 56164484 830133 * c(MSI2, DYNLL2, CUEDC1, MRPS23, SRSF1, VEZF1) 0.118163374485402 4 0.00866025403784439 1.25377837443385 240 0.414644974167673 4 4 0 -6.9057413525371 LTS-038 chr17 56164485 61562384 5397900 * c(TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, APPBP2, TLK2, CLTC, HSF5, OR4D2, C17orf64, DYNLL2, EFCAB3, CYB561, MARCH10, ACE, PPM1E, TANC2, OR4D1, C17orf47, GDPD1, METTL2A, NACA2, SKA2, YPEL2, C17orf82, LPO, MIR142, MIR21, MIR301A, MPO, TBC1D3P2, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, BCAS3, RNF43, MKS1, SMG8, MSX2P1, PRR11, TEX14, INTS2, RAD51C, RPS6KB1, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, NA NA NA NA NA NA NA NA NA LTS-038 SUPT4H1, TBX2, CA4, MIR454, DHX40, VMP1, EPX, BRIP1, USP32, PPM1D, MTMR4, TSPOAP1, TBX4, MRC2, MED13) 0.147555205959684 31 0.0582908724111384 0.954759518173768 4454 0.332065606634507 3 3 0 -6.99734982638817 LTS-038 NA NA NA NA LTS-038 chr17 61562385 61562615 231 * ACE NA 0 NA 0.618 1 NA NA NA NA NA LTS-038 chr17 61562616 65212016 3649401 * c(MIR3064, MIR5047, DCAF7, GNA13, POLG2, DDX42, FTSJ3, CSH1, CSH2, CSHL1, TCAM1P, LOC146880, ACE, DDX5, CEP112, AMZ2P1, ERN1, GH1, GH2, CACNG5, CACNG4, MILR1, ICAM2, APOH, LRRC37A3, MAP3K3, PLEKHM1P1, TACO1, PECAM1, PRKCA, TEX2, CCDC47, PSMC5, SCN4A, SMURF2, SMARCD2, SNORA50C, SNORD104, MIR634, LOC729683, CACNG1, LIMD2, KCNH6, AXIN2, RGS9, CEP95, STRADA, PRR29, CD79B, HELZ) 0.159773312176477 45 0.0546134441582682 0.848169200454017 2774 0.305240601352835 2 2 0 -6.9420996374777 LTS-038 chr17 65212017 67016729 1804713 * c(SNORA38B, LINC00674, ABCA9, ABCA8, BPTF, ARSG, NOL11, PITPNC1, C17orf58, KPNA2, LOC440461, AMZ2, FAM20A, WIPI1, PRKAR1A, PSMD12, MIR635, SLC16A6, HELZ) 0.14086180486525 13 0.0463187119523317 1.00006506977144 1286 0.314363840738958 3 3 0 -6.75926202362797 LTS-038 chr17 67016730 67017877 1148 * ABCA9 NA 0 NA 1.353 1 NA NA NA NA NA LTS-038 chr17 67017878 71746451 4728574 * c(LINC00673, MIR4524A, MIR4524B, ABCA10, ABCA9, SLC39A11, ABCA6, ABCA5, CDC42EP4, LINC00469, KCNJ2, KCNJ16, KCNJ2-AS1, LINC00511, SDK2, C17orf80, MAP2K6, CPSF4L, SOX9, SSTR2, FAM104A, COG1) 0.139426572762089 15 0.0372728677011398 1.15054234027306 1559 0.403377885143876 3 3 0 -6.87516863386809 LTS-038 chr17 71746452 71746479 28 * LINC00469 0.145 1 NA 0.537 1 NA NA NA NA NA LTS-038 chr17 71746480 72733422 986943 * c(CD300LD, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, LINC00469, RAB37, CD300E, GPR142, BTBD17, LOC400620, GPRC5C, RPL38, DNAI2, MGC16275, TTYH2) 0.13527800111895 44 0.0306357582389479 0.901963937416753 1060 0.391918211020796 3 3 0 -6.8398130377543 LTS-038 chr17 72733423 77758717 5025295 * c(SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, MIR4316, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, METTL23, CANT1, USH1G, AFMID, MGAT5B, RBFOX3, TMC8, AANAT, TRIM65, UNC13D, EVPL, FDXR, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GALK1, NAT9, FADS6, HID1, TSEN54, UBALD2, TMEM235, NA NA NA NA NA NA NA NA NA LTS-038 GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, MRPL58, OTOP3, ZACN, ITGB4, LGALS3BP, LLGL2, FLJ45079, MXRA7, ACOX1, MRPS7, HN1, TMEM104, ST6GALNAC1, PRPSAP1, MIF4GD, CASKIN2, USP36, TNRC6C, SLC25A19, UBE2O, SEC14L1, SRSF2, SMIM5, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, PRCD, MFSD11, ARMC7, RHBDF2, NUP85, MYO15B, QRICH2, CBX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 FBF1, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SYNGR2, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, TMEM94) 0.131170488781181 178 0.0509137355556266 1.07041353522457 7592 0.366389170399069 3 3 0 -6.76200594021469 LTS-038 NA NA NA NA LTS-038 chr17 77758718 78073941 315224 * c(TBC1D16, CCDC40, CBX8, CBX2, CBX4) 0.108527335145627 14 0.0439220713497024 1.30262391995135 380 0.558024850354702 4 4 0 -6.74073335932444 LTS-038 chr17 78073942 78252730 178789 * c(GAA, SLC26A11, CCDC40, RNF213, SGSH, CARD14, EIF4A3) 0.0980824217060754 18 0.0278823977551279 1.59554376164532 457 0.488565890609999 5 5 0 -6.7400849665743 LTS-038 chr17 78252731 78261578 8848 * RNF213 NA 0 NA 1.176 1 NA NA NA NA NA LTS-038 chr17 78261579 80363385 2101807 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, MIR4740, MIR4730, ALYREF, BAIAP2, PPP1R27, SLC38A10, CSNK1D, TEPSIN, SLC25A10, NOTUM, CENPX, LRRC45, FASN, CEP131, MYADML2, NPB, FSCN2, GCGR, UTS2R, CCDC57, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, OXLD1, CCDC137, ARL16, MCRIP1, AATK-AS1, ARHGDIA, TEX19, MAFG, BAIAP2-AS1, MIR338, NPTX1, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, RPTOR, BAHCC1, NA NA NA NA NA NA NA NA NA LTS-038 RNF213, PYCR1, PCYT2, RAC3, RFNG, MRPL12, SECTM1, DUS1L, ACTG1, MIR657, ASPSCR1, CHMP6, OGFOD3, FAAP100, TSPAN10, SLC16A3, HGS, CD7, MAFG-AS1, AATK) 0.116871744426511 144 0.0396144387659507 1.07703778346341 4245 0.409929544210235 3 3 0 -6.94725219322116 LTS-038 NA NA NA NA LTS-038 chr17 80363386 80364268 883 * OGFOD3 NA 0 NA 1.602 1 NA NA NA NA NA LTS-038 chr17 80364269 80386556 22288 * c(HEXDC, OGFOD3) 0.0977250750048491 2 0.00141421356237309 2.68525546981042 39 0.891088290479961 15 14 1 -6.78870502984475 LTS-038 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 0.969 1 NA NA NA NA NA LTS-038 chr17 80391535 81009636 618102 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.124734779384863 27 0.0281543871478233 1.32725506897039 878 0.40139277590099 4 4 0 -6.8278148889244 LTS-038 chr17 81009637 81083625 73989 * c(B3GNTL1, METRNL) NA 0 NA 1.46563395628284 31 0.161701038359225 5 NA NA -5.77016176912183 LTS-038 chr18 116845 121139 4295 * ROCK1P1 0.422 1 NA 0.789284544258438 25 0.198766848342474 2 2 0 -5.76441934772018 LTS-038 chr18 121140 122129 990 * ROCK1P1 NA 0 NA 0.560594122433692 29 0.234096528656587 1 NA NA -5.76441653944739 LTS-038 chr18 122130 122231 102 * ROCK1P1 NA 0 NA 1.081 1 NA NA NA NA NA LTS-038 chr18 122232 3256115 3133884 * c(NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, LPIN2, THOC1) 0.373453651379835 38 0.0368816106016127 1.04551122935588 1561 0.546201586939706 3 2 1 -6.74923171871501 LTS-038 chr18 3256116 3729175 473060 * c(MYL12B, MYL12A, DLGAP1-AS1, TGIF1, DLGAP1) 0.333054836325006 5 0.0212790977252326 1.33266015903451 323 0.355854197005422 7 5 2 -7.47193960831717 LTS-038 chr18 3729176 3729242 67 * DLGAP1 NA 0 NA 1.019 1 NA NA NA NA NA LTS-038 chr18 3729243 9959629 6230387 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, RALBP1, RAB31, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, NDUFV2, TWSG1, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, TXNDC2, L3MBTL4, VAPA, DLGAP1, PPP4R1) 0.372042410512309 67 0.0559780478069143 1.06388133072877 2434 0.334182947709035 3 2 1 -6.74915736544488 LTS-038 chr18 9959630 10548489 588860 * c(APCDD1, NAPG, VAPA) 0.35861283649345 5 0.031316130029108 1.47432371964905 118 0.493530870998676 6 4 2 -6.79365826309137 LTS-038 chr18 10548490 10548908 419 * NAPG NA 0 NA 0.957 1 NA NA NA NA NA LTS-038 chr18 10548909 13664348 3115440 * c(LDLRAD4-AS1, MIR4526, MIR5190, PRELID3A, AFG3L2, CIDEA, FAM210A, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TUBB6, NAPG) 0.387956772178656 46 0.0457848623803589 1.05447612136128 1795 1.19580002143592 3 2 1 -6.7534624952446 LTS-038 chr18 13664349 15004191 1339843 * c(MIR3156-2, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, RNMT) 0.379815803679222 20 0.12211361189698 0.897558730276068 472 0.426440479615863 3 2 1 -6.84029593603588 LTS-038 chr18 15004192 15006193 2002 * character(0) NA 0 NA 0.958250021251713 27 0.423108854272872 3 NA NA -5.76446657847811 LTS-038 chr18 18529727 18529837 111 * ROCK1 0.477 1 NA 0.617503818085831 3 0.249000669343143 1 1 0 -5.76442572209412 LTS-038 chr18 18529838 18535152 5315 * ROCK1 0.306 1 NA 0.566717527369661 54 0.230914512816346 1 1 0 -5.76448415752225 LTS-038 chr18 18535153 23748615 5213463 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, PSMA8, ANKRD29, ABHD3, ZNF521, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, SS18, LOC729950, GREB1L, TMEM241, RIOK3, CABLES1) 0.44711993890093 49 0.0511706827735394 0.81911201509792 2778 0.293244800704871 2 1 1 -6.75719197899693 LTS-038 chr18 23748616 23759049 10434 * PSMA8 NA 0 NA 0.422182799517515 39 0.247664843072098 1 NA NA -5.77126081446511 LTS-038 chr18 23759050 23772280 13231 * PSMA8 NA 0 NA 0.888 1 NA NA NA NA NA LTS-038 chr18 23772281 28918340 5146060 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC1, DSC2, DSC3, DSG1, KCTD1, AQP4, TAF4B, PCAT18, CHST9) 0.466488373647004 10 0.019789166508752 0.937593758039674 879 0.313226594223843 2 1 1 -8.08998480456944 LTS-038 chr18 28918341 30275546 1357206 * c(DSG2-AS1, SLC25A52, DSG4, DSG1, DSG2, DSG3, TRAPPC8, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, B4GALT6) 0.462246121174131 24 0.0281780056072107 0.795136708615169 1285 0.293441576196899 2 1 1 -6.95255847933442 LTS-038 chr18 30275547 30314113 38567 * KLHL14 NA 0 NA 1.549 1 NA NA NA NA NA LTS-038 chr18 30314114 31251784 937671 * c(CCDC178, KLHL14, ASXL3) 0.466909952923224 2 0.00777817459305203 1.0995988125311 218 0.456542260639935 4 2 2 -9.67843045777379 LTS-038 chr18 31251785 33757609 2505825 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, DTNA, ZNF396, SLC39A6, GALNT1, MIR187, RPRD1A, ELP2, ZNF24, ASXL3, C18orf21, ZNF397, NOL4) 0.453265655825002 15 0.123745976365564 0.870999858990405 1542 0.607383974981534 2 1 1 -6.76620473017632 LTS-038 chr18 33757610 45358290 11600681 * c(MIR4319, MIR4318, TCEB3CL2, MIR5583-2, MIR5583-1, HAUS1, LOXHD1, C18orf25, TCEB3C, TPGS2, SETBP1, LINC00907, SIGLEC15, ST8SIA5, RNF165, ATP5A1, IER3IP1, TCEB3B, PIK3C3, MOCOS, CELF4, KIAA1328, EPG5, RIT2, KC6, MIR924HG, SKOR2, SLC14A1, SYT4, FHOD3, SLC14A2, KATNAL2, HDHD2, PSTPIP2, PIAS2) 0.436438392436498 45 0.07744709500848 0.799858838547974 2874 0.260624921867007 2 1 1 -6.74037886423811 LTS-038 chr18 45358291 45358292 2 * character(0) NA 0 NA 0.88 1 NA NA NA NA NA LTS-038 chr18 45358293 47919474 2561182 * c(SNORD58C, MIR1539, MIR4320, RPL17-C18orf32, MIR4743, MIR4744, ACAA2, ZBTB7C, SKA1, CFAP53, SNORD58B, SNORD58A, CXXC1, SMAD2, SMAD7, MBD1, MYO5B, C18orf32, DYM, RPL17, SCARNA17, LIPG, CTIF) 0.451147904155981 31 0.040690439023891 0.9293378097044 1347 0.310255967112361 2 1 1 -7.09270932020227 LTS-038 chr18 47919475 61089716 13170242 * c(LINC01630, LINC01539, LOC100505549, MIR4529, MIR3591, LINC-ROR, LINC01544, MALT1, POLI, ALPK2, STARD6, CCBE1, C18orf54, DCC, SKA1, RNF152, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, CDH20, DYNAP, BOD1L2, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, SMAD4, MC4R, ME2, NARS, ST8SIA3, MEX3C, ATP8B1, PMAIP1, ZCCHC2, ZNF532, ELAC1, MAPK4, KIAA1468, RAB27B, BCL2, SNORA37, TCF4, CCDC68, MRO, TNFRSF11A, MBD2, NA NA NA NA NA NA NA NA NA LTS-038 SEC11C, TXNL1, ONECUT2, VPS4B) 0.439518064639951 105 0.0774689669641389 0.789860289290927 5350 0.401832199507733 2 1 1 -6.74200225209754 LTS-038 NA NA NA NA LTS-038 chr18 61089717 61151598 61882 * c(SERPINB5, VPS4B) NA 0 NA 0.543 1 NA NA NA NA NA LTS-038 chr18 61151599 61390570 238972 * c(SERPINB5, SERPINB13, SERPINB3, SERPINB4, SERPINB12, SERPINB11) 0.445386256715549 13 0.032917924351176 0.606701146314808 365 0.201234667464213 2 1 1 -6.98960605255216 LTS-038 chr18 61390571 61390640 70 * SERPINB11 NA 0 NA 0.637126810659341 3 0.0190525588832577 1 NA NA -5.76705410957622 LTS-038 chr18 61390641 61391214 574 * SERPINB11 NA 0 NA 1.006 1 NA NA NA NA NA LTS-038 chr18 61391215 61391228 14 * SERPINB11 0.357 1 NA 1.294 1 NA NA NA NA NA LTS-038 chr18 61391229 77897605 16506377 * c(LOC100131655, CDH7, LINC01541, LOC100505817, RBFADN, MIR5011, TSHZ1, CD226, TXNL4A, FAM69C, CBLN2, CYB5A, FBXO15, DOK6, LINC00305, ADNP2, GALR1, RTTN, KCNG2, SALL3, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, LOC339298, ATP9B, LINC01538, LOC400655, LINC00909, C18orf65, MBP, HSBP1L1, NFATC1, SERPINB2, SERPINB8, SERPINB10, TMX3, ZNF407, CNDP2, LOC643542, C18orf63, ZNF236, CCDC102B, RBFA, PQLC1, NA NA NA NA NA NA NA NA NA LTS-038 NETO1, CNDP1, SERPINB7, SERPINB11, CTDP1, DSEL, SOCS6, ZNF516) 0.39948474097892 91 0.0765546418371426 0.996776572892462 4050 0.393746097124982 3 2 1 -6.94363123970593 LTS-038 NA NA NA NA LTS-038 chr18 77897606 78005362 107757 * c(PARD6G-AS1, ADNP2, PARD6G) NA 0 NA 1.00108584153331 117 0.239462990919351 3 NA NA -5.76700775533316 LTS-038 chr19 107416 107430 15 * character(0) 0 1 NA 3.369 1 NA NA NA NA NA LTS-038 chr19 107431 847866 740436 * c(MIR3187, MIR4745, FSTL3, MISP, C2CD4C, SHC2, FGF22, ODF3L2, GZMM, LINC01002, PRSS57, PALM, THEG, POLRMT, MIER2, RNF126, PRTN3, AZU1, PTBP1, HCN2, BSG, PLPPR3, OR4F17, MADCAM1, PLPP2, TPGS1, CDC34) 0.138018028219893 41 0.054723495645013 0.803747101261305 1029 0.320331927062292 3 3 0 -7.02942971956563 LTS-038 chr19 847867 1154428 306562 * c(MED16, ABCA7, GRIN3B, CNN2, CFD, ARID3A, ELANE, SBNO2, ARHGAP45, GPX4, POLR2E, PRTN3, WDR18, KISS1R, R3HDM4, TMEM259) 0.104492122855885 49 0.0252166631821265 1.29980614492766 1106 0.427218868568791 4 4 0 -6.8087565908292 LTS-038 chr19 1154429 1206946 52518 * c(SBNO2, STK11) NA 0 NA 0.793 1 NA NA NA NA NA LTS-038 chr19 1206947 1428959 222013 * c(CIRBP, CIRBP-AS1, EFNA2, CBARP, GAMT, DAZAP1, NDUFS7, ATP5D, C19orf24, STK11, MUM1, MIDN) 0.140299111182178 6 0.0295121443928879 0.909306360866283 505 0.269855235127108 3 3 0 -6.77091740792042 LTS-038 chr19 1428960 1429898 939 * DAZAP1 NA 0 NA 0.72 1 NA NA NA NA NA LTS-038 chr19 1429899 1481559 51661 * c(APC2, C19orf25, DAZAP1, PCSK4, RPS15) 0.142388254196202 2 0.00353553390593272 0.690046690065079 230 0.223355032818604 3 3 0 -6.97540741498853 LTS-038 chr19 1481560 1490285 8726 * PCSK4 0.181 1 NA 0.76752494257166 73 0.262070513330634 2 2 0 -5.76453112605147 LTS-038 chr19 1490286 1815931 325646 * c(UQCR11, PLK5, ATP8B3, ADAMTSL5, ONECUT3, MEX3D, MBD3, PCSK4, REXO1, TCF3, REEP6) 0.179519481665696 30 0.0601626530963039 0.686926049871219 696 0.270261586058215 2 2 0 -6.79823378692135 LTS-038 chr19 1815932 1816030 99 * REXO1 NA 0 NA 0.663 1 NA NA NA NA NA LTS-038 chr19 1816031 2576204 760174 * c(LOC100288123, MIR1909, MIR1227, MIR4321, IZUMO4, SCAMP4, ADAT3, JSRP1, MOB3A, CSNK1G2, CSNK1G2-AS1, TIMM13, AMH, GNG7, MKNK2, TMPRSS9, C19orf35, GADD45B, OAZ1, LSM7, PLEKHJ1, BTBD2, SPPL2B, REXO1, LINGO3, SF3A2, ABHD17A, KLF16, DOT1L, LMNB2, AP3D1) 0.17656593804137 41 0.0630665927567934 0.782844434650601 1608 0.242238926345246 2 2 0 -6.74689687896745 LTS-038 chr19 2576205 2642750 66546 * GNG7 NA 0 NA 0.426 1 NA NA NA NA NA LTS-038 chr19 2642751 4198306 1555556 * c(C19orf71, HMG20B, ZNF554, MRPL54, ZNF57, MFSD12, GIPC3, DIRAS1, ZNF555, DAPK3, AES, ANKRD24, EEF2, ZFR2, PIP5K1C, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, SLC39A3, CACTIN-AS1, MATK, NFIC, ZBTB7A, FZR1, SIRT6, PIAS4, MAP2K2, NCLN, ZNF77, CACTIN, CELF5, SGTA, TBXA2R, MIR637, THOP1, TLE2, TLE6, ZNF556, DOHH, CREB3L3, RAX2, ATCAY, S1PR4, APBA3) 0.236857678678852 52 0.0714909813000201 0.485815913710732 2411 0.15652429775337 1 1 0 -7.35477429888159 LTS-038 chr19 4198307 4222685 24379 * ANKRD24 0.191873317981248 7 0.114209915339715 0.369902486118464 123 0.35796548495346 2 2 0 -6.80208328842379 LTS-038 chr19 4222686 5274384 1051699 * c(DPP9-AS1, CHAF1A, MIR4747, MIR4746, EBI3, PLIN3, SEMA6B, LRG1, TMIGD2, TNFAIP8L1, TICAM1, ANKRD24, KDM4B, MIR7-3HG, UHRF1, MIR7-3, PLIN5, FEM1A, STAP2, CCDC94, MYDGF, SHD, PTPRS, ARRDC5, SH3GL1, PLIN4, FSD1, UBXN6, HDGFRP2, MPND, DPP9) 0.249100603642252 39 0.0883214439583502 0.511796705344635 1669 0.226689475259708 1 1 0 -6.82090121458578 LTS-038 chr19 5274385 5456361 181977 * c(ZNRF4, PTPRS) 0.462 1 NA 0.666268463724474 25 0.224456194686922 2 2 0 -5.8348288458488 LTS-038 chr19 5456362 5456776 415 * ZNRF4 NA 0 NA 0.54671746988067 10 0.0785914895025042 1 NA NA -5.7644101569368 LTS-038 chr19 5456777 6427444 970668 * c(LOC100128568, MIR3940, ACER1, C19orf70, NDUFA11, ZNRF4, PRR22, FUT3, FUT5, FUT6, TINCR, CATSPERD, RPL36, SLC25A41, GTF2F1, HSD11B1L, VMAC, MLLT1, NRTN, PSPN, DUS3L, RFX2, SAFB, ACSBG2, CLPP, CAPS, ALKBH7, RANBP3, KHSRP, LONP1, SAFB2) 0.397114999685392 17 0.122078807719103 0.949403586660032 1428 0.659563275176338 3 2 1 -6.75912952055879 LTS-038 chr19 6427445 6429633 2189 * SLC25A41 NA 0 NA 0.617 1 NA NA NA NA NA LTS-038 chr19 6429634 6718462 288829 * c(TUBB4A, SLC25A41, C3, SLC25A23, DENND1C, TNFSF14, TNFSF9, CRB3, CD70) 0.431843219505838 3 0.0545252235208623 0.757265957236908 480 0.229034997908724 2 1 1 -6.77657303701512 LTS-038 chr19 6718463 6719216 754 * C3 NA 0 NA 1.17 1 NA NA NA NA NA LTS-038 chr19 6719217 6825121 105905 * c(SH2D3A, GPR108, C3, VAV1, TRIP10) 0.412789680317465 6 0.0425711169691377 0.975848343845042 253 0.290107405131838 5 3 2 -6.89370095324139 LTS-038 chr19 6825122 6825304 183 * VAV1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-038 chr19 6825305 7012051 186747 * c(ADGRE1, ADGRE4P, FLJ25758, VAV1) 0.434245123323856 7 0.039500452076979 0.68320438002122 322 0.218406297640998 2 1 1 -6.83309830806871 LTS-038 chr19 7012052 7019113 7062 * character(0) NA 0 NA 1.217 1 NA NA NA NA NA LTS-038 chr19 7019114 8601181 1582068 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, MBD3L5, CD209, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF557, CERS4, LRRC8E, PRR36, PRAM1, ZNF414, FBN3, NA NA NA NA NA NA NA NA NA LTS-038 RAB11B, PEX11G) 0.407656936085239 76 0.108231321471044 0.902136601747266 2701 0.312207739197167 2 1 1 -6.94421543399812 LTS-038 NA NA NA NA LTS-038 chr19 8601182 10047037 1445856 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, ZNF846, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, OR7G2, OR7G3, MYO1F, PIN1, ZNF562, FBXL12, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ADAMTS10, ZNF559, MBD3L1, ZNF561, OLFM2, MUC16) 0.406670681736474 68 0.0775526032924514 0.746365985537653 2418 0.343618446089092 2 1 1 -6.90892707456229 LTS-038 chr19 10047038 10070217 23180 * OLFM2 NA 0 NA 0.475 1 NA NA NA NA NA LTS-038 chr19 10070218 10078589 8372 * COL5A3 0.291250051525902 3 0.0145716619962629 0.667873310300674 51 0.259401625163095 11 8 3 -6.93379477664172 LTS-038 chr19 10078590 10079093 504 * COL5A3 0.488 1 NA 0.600673101667407 5 0.0952486220372768 1 1 0 -5.76470015971423 LTS-038 chr19 10079094 10200757 121664 * c(C3P1, COL5A3, RDH8, C19orf66) 0.440349327986762 16 0.0422519723405508 0.62437392386119 358 0.245279307246116 2 1 1 -6.81265720315687 LTS-038 chr19 10200758 10200761 4 * C19orf66 0.419 1 NA 1.035 1 NA NA NA NA NA LTS-038 chr19 10200762 11618896 1418135 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, CCDC151, ZNF653, RAVER1, SWSAP1, CCDC159, ILF3-AS1, SPC24, DNM2, DNMT1, ELAVL3, EPOR, C19orf38, KANK2, TSPAN16, ICAM1, ICAM3, ICAM4, ILF3, TMEM205, LDLR, MIR199A1, P2RY11, MRPL4, ECSIT, PDE4A, S1PR5, C19orf66, PRKCSH, ANGPTL8, PPAN, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, NA NA NA NA NA NA NA NA NA LTS-038 ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, RAB3D, KEAP1) 0.423436889926198 70 0.0681355426624977 0.864670322872424 3472 0.294908179397089 2 1 1 -6.85290076980301 LTS-038 NA NA NA NA LTS-038 chr19 11618897 11623940 5044 * ECSIT NA 0 NA 0.64 1 NA NA NA NA NA LTS-038 chr19 11623941 12774241 1150301 * c(ZNF625-ZNF20, ZNF443, ZNF441, ZNF491, ZNF440, CNN1, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, ZNF627, ZNF763, ZNF844, ZNF788, ZNF833P, MAN2B1, ECSIT, ZNF44, ACP5, ZNF823, ZNF490, ZNF878, ZNF20, ZNF69, ZNF136, ZNF442, ELOF1, ZNF799, ZNF625, ZNF700, ZNF439) 0.448408697400039 48 0.0420016410942469 0.706717815843288 1938 0.300176191804139 2 1 1 -6.84981214190202 LTS-038 chr19 12774242 13264398 490157 * c(RNASEH2A, KLF1, NACC1, DHPS, DNASE2, DAND5, FARSA, MAST1, SYCE2, GCDH, SNORD41, HOOK2, TNPO2, JUNB, LYL1, MAN2B1, ASNA1, NFIX, WDR83OS, BEST2, TRMT1, RAD23A, PRDX2, C19orf43, CALR, RTBDN, FBXW9, WDR83, STX10, GADD45GIP1, IER2) 0.387130610835185 9 0.0557853027239254 1.05213999058551 1390 0.330154918672057 3 2 1 -6.74425028636242 LTS-038 chr19 13264399 13397324 132926 * c(CACNA1A, IER2) 0.447 1 NA 1.08221978888899 159 0.399413755473519 3 3 0 -5.76485764155128 LTS-038 chr19 13397325 14682910 1285586 * c(LOC100507373, DDX39A, GIPC1, MISP3, RLN3, ADGRL1, LOC284454, C19orf53, DNAJB1, NANOS3, PALM3, MIR181C, NDUFB7, CC2D1A, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, RFX1, C19orf67, ZSWIM4, MIR639, CACNA1A, C19orf57, PODNL1, CCDC130, MRI1, SAMD1, DCAF15, IL27RA, TECR, ADGRE5) 0.356987723411828 16 0.0587388287251287 1.03196096002381 1704 0.330049659093525 3 2 1 -6.82207521438627 LTS-038 chr19 14682911 14693832 10922 * character(0) NA 0 NA 0.631 1 NA NA NA NA NA LTS-038 chr19 14693833 15198946 505114 * c(OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3) 0.353038603676341 21 0.0905551397400133 0.777624565813456 644 0.398553157363021 3 2 1 -6.9514584454918 LTS-038 chr19 15198947 15218238 19292 * SYDE1 NA 0 NA 0.901 1 NA NA NA NA NA LTS-038 chr19 15218239 16145615 927377 * c(MIR1470, AKAP8, ILVBL, CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, BRD4, OR10H3, OR10H2, OR10H1, AKAP8L, OR10H5, CYP4F24P, CYP4F3, NOTCH3, CYP4F11, WIZ, RASAL3, UCA1, CYP4F12, EPHX3, CYP4F2, SYDE1) 0.411298980939812 48 0.0621342489583404 1.05525627818318 1480 0.332851371944489 3 2 1 -6.88633620516068 LTS-038 chr19 16145616 16928753 783138 * c(KLF2, CHERP, CIB3, CALR3, LINC00905, FAM32A, NWD1, RAB8A, EPS15L1, TPM4, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, MED26) 0.448353496576659 7 0.0297761489722739 1.32656305131169 1062 0.417772647821492 4 2 2 -6.74206930034633 LTS-038 chr19 16928754 16940592 11839 * c(SIN3B, NWD1) NA 0 NA 1.992 1 NA NA NA NA NA LTS-038 chr19 16940593 17720879 780287 * c(TMEM221, NXNL1, ANKLE1, FAM129C, NR2F6, UNC13A, SIN3B, PGLS, CPAMD8, BABAM1, SLC27A1, MYO9B, USE1, ANO8, MRPL34, BST2, DDA1, ABHD8, OCEL1, COLGALT1, PLVAP, USHBP1, GTPBP3, F2RL3, HAUS8, MVB12A) 0.437567744029924 30 0.040092264280936 1.507069544959 1741 0.632675082796353 4 2 2 -6.77793315876208 LTS-038 chr19 17720880 19413297 1692418 * c(MEF2B, MIR3188, MIR3189, SUGP2, B3GNT3, IFI30, CERS1, COPE, CCDC124, LRRC25, NR2C2AP, COMP, NCAN, SSBP4, UNC13A, MAST3, FCHO1, CRTC1, FKBP8, TMEM59L, LSM4, GDF1, SNORA68, ARRDC2, SLC25A42, IL12RB1, INSL3, JAK3, JUND, KCNN1, HAPLN4, BORCS8-MEF2B, PDE4C, ISYNA1, PIK3R2, TM6SF2, DDX49, PGPEP1, TMEM161A, C19orf60, MAP1S, KLHL26, SUGP1, RAB3A, UPF1, RPL18A, SLC5A5, LOC729966, BORCS8, UBA52, KXD1, KIAA1683, NA NA NA NA NA NA NA NA NA LTS-038 ELL, MPV17L2, RFXANK, CRLF1, ARMC6, HOMER3, GDF15) 0.428470031815126 56 0.0571475533784506 1.25709957396899 3328 0.389878600300415 4 2 2 -6.79036335759155 LTS-038 NA NA NA NA LTS-038 chr19 19413298 19414165 868 * SUGP1 NA 0 NA 2.306 1 NA NA NA NA NA LTS-038 chr19 19414166 24127624 4713459 * c(ZNF730, ZNF737, ZNF729, MIR1270, ZNF257, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, MAU2, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, RPSAP58, LINC00664, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, GATAD2A, ZNF253, ATP13A1, ZNF492, SUGP1, LOC641367, ZNF826P, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, PBX4, ZNF93, TSSK6, ZNF486, ZNF682, NA NA NA NA NA NA NA NA NA LTS-038 LPAR2, ZNF101) 0.402082625057337 49 0.104022245462307 1.48474088317684 2419 0.54016090061704 5 3 2 -6.76218326357173 LTS-038 NA NA NA NA LTS-038 chr19 24127625 24345121 217497 * c(HAVCR1P1, ZNF254) NA 0 NA 1.33268296120366 49 0.716587132313495 4 NA NA -5.7645487679274 LTS-038 chr19 28247625 30190658 1943034 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1, PLEKHF1, C19orf12) 0.469 1 NA 1.2522410288817 117 0.300999786300232 4 4 0 -5.78382162257378 LTS-038 chr19 30190659 35850911 5660253 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, CEBPA-AS1, C19orf12, ANKRD27, PDCD2L, CEP89, NA NA NA NA NA NA NA NA NA LTS-038 RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.442022767533104 90 0.0635877837496893 1.21369515092576 3416 0.405167643773581 4 2 2 -6.83441961284881 LTS-038 NA NA NA NA LTS-038 chr19 35850912 35863608 12697 * FFAR3 0.367217757975266 3 0.104500398723322 0.589366710178306 56 0.590617634015773 3 2 1 -6.74858508410937 LTS-038 chr19 35863609 35863627 19 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-038 chr19 35863628 38024367 2160740 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, UPK1A-AS1, TMEM147, HCST, UPK1A, TBCB, ARHGAP33, HSPB6, COX6B1, COX7A1, ZNF420, ZNF565, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, SYNE4, ZNF585A, THAP8, U2AF1L4, ETV2, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, APLP1, ZNF260, ZNF850, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, NPHS1, ATP4A, POLR2I, PSENEN, NA NA NA NA NA NA NA NA NA LTS-038 LIN37, ZFP14, ZNF529, PRODH2, SDHAF1, LOC644189, OVOL3, LOC728752, TYROBP, ZNF146, RBM42, LRFN3, IGFLR1, CAPNS1, KIRREL2, ZNF527, NFKBID, ZNF382, ZNF566, ALKBH6, ZNF461, ZNF585B, DMKN, KMT2B) 0.45632589172902 92 0.0592337387798738 1.17937437706832 3983 0.362530726454658 4 2 2 -6.85017686219371 LTS-038 NA NA NA NA LTS-038 chr19 38024368 38024410 43 * ZNF793 NA 0 NA 1.158 1 NA NA NA NA NA LTS-038 chr19 38024411 38027818 3408 * ZNF793 NA 0 NA 1.01 1 NA NA NA NA NA LTS-038 chr19 38027819 38033251 5433 * ZNF793 0.364 1 NA 0.739310222353395 22 0.132103601282711 2 2 0 -5.76552573359533 LTS-038 chr19 38033252 38655582 622331 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF781, ZNF540, ZFP30, SIPA1L3, ZNF793, ZNF571, LOC644554, WDR87, ZNF607) 0.36450549385089 19 0.0474496963553037 0.869154999131298 661 0.245090807936872 3 2 1 -7.00726727834151 LTS-038 chr19 38655583 38673107 17525 * SIPA1L3 NA 0 NA 1.986 1 NA NA NA NA NA LTS-038 chr19 38673108 38774435 101328 * c(SPINT2, SIPA1L3, DPF1, PPP1R14A) 0.272 1 NA 1.48012594398003 188 0.577227997979072 5 5 0 -5.76483740943305 LTS-038 chr19 38774436 38778474 4039 * SPINT2 NA 0 NA 0.914 1 NA NA NA NA NA LTS-038 chr19 38778475 38894078 115604 * c(SPINT2, FAM98C, GGN, SPRED3, PSMD8, CATSPERG, C19orf33, YIF1B, KCNK6) 0.348276075913327 16 0.0322127692072569 1.00713627692521 414 0.287733229643311 6 4 2 -7.0881911580537 LTS-038 chr19 38894079 39103436 209358 * c(MAP4K1, RASGRP4, FAM98C, RYR1) 0 2 0 0.815262885673252 727 0.249395522650215 0 0 0 -Inf LTS-038 chr19 39103437 39104520 1084 * MAP4K1 NA 0 NA 1.517 1 NA NA NA NA NA LTS-038 chr19 39104521 39228262 123742 * c(MAP4K1, CAPN12, EIF3K, ACTN4) 0.370507068456754 4 0.054117156860525 1.19606193915983 274 0.454071427487344 3 2 1 -6.7556173906364 LTS-038 chr19 39228263 40389749 1161487 * c(LOC100129935, MIR4530, IFNL4, PAK4, DLL3, FBXO17, CLC, EID2B, RINL, FBXO27, CAPN12, LGALS16, EID2, ECH1, FBL, SIRT2, IFNL2, IFNL3, IFNL1, LGALS13, HNRNPL, NCCRP1, SYCN, LEUTX, SELENOV, ACP7, LGALS4, LGALS7, LGALS17A, NFKBIB, PAF1, SARS2, SAMD4B, MED29, LGALS14, LRFN1, MRPS12, RPS16, CCER2, PLEKHG2, LGALS7B, SUPT5H, ZFP36, FCGBP, DYRK1B, TIMM50, GMFG) 0.343385046268813 42 0.0514073029966923 0.966466183423296 1955 0.310853793870099 3 2 1 -7.06491478516576 LTS-038 chr19 40389750 40406034 16285 * FCGBP 0.37578684227344 2 0.119501046020527 0.52181760243357 40 0.483635071155186 3 2 1 -6.75397935457536 LTS-038 chr19 40406035 40903690 497656 * c(C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, ZNF546, MAP3K10, PSMC4, PRX, MIR641, CNTD2, FCGBP) 0.357449847697499 35 0.0468629864157025 0.866944656908775 1111 0.258949908360862 3 2 1 -7.02259641578565 LTS-038 chr19 40903691 42027501 1123811 * c(ERICH4, PCAT19, MIA-RAB4B, RAB4B-EGLN2, HNRNPUL1, EGLN2, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, C19orf54, CYP2S1, SERTAD3, SERTAD1, B3GNT8, RAB4B, ATP5SL, AXL, EXOSC5, PRX, SPTBN4, BCKDHA, TMEM91, BLVRB, SNRPA, TGFB1, COQ8B, ITPKC, B9D2, MIA, LTBP4, CCDC97, NUMBL, SHKBP1) 0.348457481710275 38 0.0699130174876235 0.994582998648306 1951 0.313728103286059 3 2 1 -6.86932830305869 LTS-038 chr19 42027502 42352600 325099 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, DMRTC2, CEACAM21) 0.325019252416328 6 0.0341682113471962 0.768183002792515 337 0.24157548774993 4 3 1 -7.71051677428329 LTS-038 chr19 42352601 42352860 260 * DMRTC2 NA 0 NA 1.347 1 NA NA NA NA NA LTS-038 chr19 42352861 42754112 401252 * c(MIR4323, LOC100505622, RABAC1, ZNF526, DEDD2, ERF, GRIK5, GSK3A, ATP1A3, POU2F2, RPS19, DMRTC2, ZNF574, ARHGEF1, CD79A) NA 0 NA 0.988338545076514 917 0.398904087587824 3 NA NA -5.77000231140848 LTS-038 chr19 42754113 42754425 313 * ERF NA 0 NA 1.982 1 NA NA NA NA NA LTS-038 chr19 42754426 42804446 50021 * c(ERF, CIC, PAFAH1B3) 0.32 1 NA 1.51275935652331 153 0.42171677637211 5 5 0 -5.76452939500126 LTS-038 chr19 42804447 42874941 70495 * c(MEGF8, PRR19, TMEM145, PAFAH1B3) 0.331 1 NA 1.07691903883081 322 0.29413373102872 3 3 0 -5.76471591746378 LTS-038 chr19 42874942 42875419 478 * MEGF8 NA 0 NA 0.691 1 NA NA NA NA NA LTS-038 chr19 42875420 43920751 1045332 * c(LOC100289650, LIPE-AS1, CEACAM8, MEGF8, PRG1, CXCL17, LOC284344, LIPE, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CD177, CEACAM1, PSG10P, TEX101, CNFN) 0.316783668891499 17 0.0698239382514419 0.8363968949251 609 0.311841591679745 3 2 1 -7.49892097890635 LTS-038 chr19 43920752 43922052 1301 * TEX101 NA 0 NA 1.187 1 NA NA NA NA NA LTS-038 chr19 43922053 47193850 3271798 * c(SRRM5, EML2-AS1, LOC100379224, MIR642B, LOC100505715, PPP5D1, DACT3-AS1, APOC4-APOC2, MIR4531, RNU6-66P, TOMM40, ZNF234, PPP1R13L, CD3EAP, CLASRP, CKM, CLPTM1, CEACAM20, IRGQ, ZNF428, PPM1N, KLC3, IGSF23, DACT3, SIX5, IGFL2, ZNF296, DMPK, DMWD, CADM4, ERCC1, ERCC2, FBXO46, ETHE1, FOSB, CBLC, EML2, PRKD2, IRF2BP1, GIPR, ZNF285, LYPD3, GPR4, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, FOXA3, MYPOP, NANOS2, NA NA NA NA NA NA NA NA NA LTS-038 APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, IGFL1, KCNN4, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, IGFL3, PINLYP, BCAM, MIR330, IGFL4, NOVA2, PLAUR, QPCTL, PNMAL1, PPP5C, SMG9, IRGC, CEACAM19, PTGIR, PNMAL2, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, HIF3A, PHLDB3, SNRPD2, MIR642A, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, OPA3, CALM3, RSPH6A, SYMPK, TEX101, CCDC8, PGLYRP1, EXOC3L2, ZNF235, LOC93429, GNG8) 0.360511333004226 138 0.088094911455258 1.00219346543047 5619 0.32306637040247 3 2 1 -6.80186477718136 LTS-038 NA NA NA NA LTS-038 chr19 47193851 47212593 18743 * c(MIR320E, PRKD2) 0.455 1 NA 0.820113940454709 49 0.167839150504812 2 2 0 -5.76468898028862 LTS-038 chr19 47212594 47525046 312453 * c(SNAR-E, MIR320E, AP2S1, PRKD2, ARHGAP35, STRN4, NPAS1, SLC1A5, FKRP) 0.443718224073679 5 0.032439173848913 0.943783547622755 352 0.279112669733548 2 1 1 -6.80009883015671 LTS-038 chr19 47525047 47525050 4 * NPAS1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-038 chr19 47525051 48305357 780307 * c(MIR3191, MIR3190, NAPA-AS1, SAE1, KPTN, ZC3H4, INAFM1, CCDC9, BBC3, C5AR2, TPRX1, GLTSCR2, GLTSCR1, EHD2, NPAS1, TMEM160, MEIS3, SELENOW, SLC8A2, SNORD23, C5AR1, ZNF541, NAPA, DHX34) 0.411563759127263 34 0.0461348870973652 0.810761016277765 1198 0.257005210658054 2 1 1 -7.03247116324526 LTS-038 chr19 48305358 48305431 74 * TPRX1 NA 0 NA 0.698 1 NA NA NA NA NA LTS-038 chr19 48305432 48607891 302460 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SULT2A1, PLA2G4C) 0.431888960133182 16 0.0556163944654212 0.635380143251893 351 0.329630495564387 2 1 1 -6.85182917633519 LTS-038 chr19 48607892 48607896 5 * PLA2G4C NA 0 NA 0.767 1 NA NA NA NA NA LTS-038 chr19 48607897 49901318 1293422 * c(SNAR-G1, SNAR-G2, MIR4324, CARD8-AS1, LOC101059948, CGB3, RUVBL2, KDELR1, CGB1, CGB2, LMTK3, NTN5, CCDC155, DBP, ZNF114, SPACA4, EMP3, CARD8, SYNGR4, PPP1R15A, FTL, FUT1, FUT2, FGF21, DKKL1, DHDH, MAMSTR, IZUMO1, SLC6A16, GRIN2D, GYS1, HRC, KCNA7, KCNJ14, LHB, LIG1, NTF4, NUCB1, HSD17B14, TRPM4, FAM83E, RASIP1, C19orf73, TMEM143, SPHK2, PLEKHA4, BAX, BCAT2, RPL18, LIN7B, SEC1P, SNRNP70, SULT2B1, NA NA NA NA NA NA NA NA NA LTS-038 TULP2, CA11, GRWD1, TEAD2, PPFIA3, PLA2G4C, CYTH2, CCDC114, CGB5, CGB7, CGB8, CD37) 0.40394178078783 74 0.0441806165522136 0.899235502159623 3049 0.493815253938915 3 2 1 -6.98709191885822 LTS-038 NA NA NA NA LTS-038 chr19 49901319 49938568 37250 * c(GFY, PTH2, CCDC155, SLC17A7) NA 0 NA 0.831222340081171 165 0.183835949072728 2 NA NA -5.76546193429207 LTS-038 chr19 49938569 49939795 1227 * SLC17A7 NA 0 NA 0.604 1 NA NA NA NA NA LTS-038 chr19 49939796 49949589 9794 * c(PIH1D1, SLC17A7) 0.108 1 NA 0.604021409130031 17 0.179325205734623 1 1 0 -5.76619801292954 LTS-038 chr19 49949590 50462736 513147 * c(PTOV1-AS1, MIR4749, MIR4750, MIR4751, MIR5088, PNKP, SIGLEC11, CPT1C, ALDH16A1, AP2A1, ADM5, FCGRT, ATF5, FLT3LG, RPL13A, NUP62, IL4I1, SNORD35A, SNORD34, SNORD33, SNORD32A, PRMT1, IRF3, MIR150, NOSIP, PTOV1, PIH1D1, PRRG2, RCN3, PRR12, SCAF1, TSKS, RPS11, RRAS, TBC1D17, FUZ, MED25, BCL2L12, AKT1S1, SNORD35B) 0.210581368958867 24 0.0485033989545571 0.707980287804782 1776 0.214829708411046 2 2 0 -6.99082408923685 LTS-038 chr19 50462737 50473328 10592 * c(SIGLEC11, SIGLEC16) 0.35760086662866 3 0.14151442800412 0.346188838194362 42 0.201899222800008 3 2 1 -6.9334907870491 LTS-038 chr19 50473329 50549440 76112 * c(ZNF473, SIGLEC16, VRK3) 0.287206229091558 8 0.0322268743220845 0.613355880810796 158 0.196029776577044 1 1 0 -6.9134020769425 LTS-038 chr19 50549441 50662726 113286 * c(SNAR-B2, SNAR-D, IZUMO2, ZNF473, LOC400710) 0.405 1 NA 0.648266542877765 43 0.315201362980566 1 1 0 -5.78403054990409 LTS-038 chr19 50662727 50662865 139 * IZUMO2 NA 0 NA 0.521560235221161 5 0.110099046317395 1 NA NA -5.76442577543624 LTS-038 chr19 50662866 50665871 3006 * IZUMO2 NA 0 NA 0.799 1 NA NA NA NA NA LTS-038 chr19 50665872 50885944 220073 * c(IZUMO2, NAPSB, KCNC3, NR1H2, MYH14, NAPSA) 0.375613783848688 12 0.0511719472154244 0.974068289308294 419 0.367297364773775 3 2 1 -6.74203845985359 LTS-038 chr19 50885945 50902163 16219 * c(POLD1, NR1H2) NA 0 NA 0.544 1 NA NA NA NA NA LTS-038 chr19 50902164 51631224 729061 * c(SNAR-F, KLK11, KLK8, FAM71E1, JOSD2, KLK5, KLK13, SIGLEC9, EMC10, MGC45922, KLK9, GPR32, C19orf81, KLK3, KLK1, KLK2, KLK14, KLK12, MYBPC2, SHANK1, POLD1, ASPDH, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SPIB, SNORD88A, SNORD88B, SNORD88C, SYT3, C19orf48, CTU1, ACPT, LRRC4B, KLK4) 0.379719246118 28 0.0959638586620618 0.82111769855101 1445 0.322501492141886 3 2 1 -6.97767969256487 LTS-038 chr19 51631225 51631762 538 * SIGLEC9 NA 0 NA 0.47 1 NA NA NA NA NA LTS-038 chr19 51631763 53517424 1885662 * c(SIGLEC14, LOC100129083, ZNF816-ZNF321P, CLDND2, ZNF816, VSIG10L, C19orf84, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, ETFB, FPR1, FPR2, FPR3, SIGLEC7, SIGLEC9, SIGLEC8, SIGLEC17P, SIGLECL1, ZNF615, ZNF841, HAS1, ZNF808, LIM2, ZNF321P, ZNF880, IGLON5, MIRLET7E, MIR125A, MIR99B, NKG7, PPP2R1A, ZNF701, ZNF83, ZNF350, ZNF649, MIR643, CEACAM18, LINC01530, ZNF28, ZNF137P, ZNF175, NA NA NA NA NA NA NA NA NA LTS-038 ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF577, SIGLEC5, SIGLEC10, SIGLEC12, ZNF616, ZNF766, ZNF468, CD33, SIGLEC6, ZNF432) 0.420232912228638 79 0.093153638975608 0.664648572094924 2651 0.225488709980293 2 1 1 -7.4452948191814 LTS-038 NA NA NA NA LTS-038 chr19 53517425 53553091 35667 * c(ERVV-2, ERVV-1) NA 0 NA 0.309691539496727 40 0.14457683610614 0 NA NA -5.76665316484512 LTS-038 chr19 53553092 53999166 446075 * c(ERVV-2, BIRC8, ZNF813, TPM3P9, ZNF525, VN1R2, VN1R4, ZNF677, ZNF761, ZNF818P, ZNF415, FAM90A27P, ZNF665, ZNF347, ZNF160, ZNF765, ZNF845) 0.443331987643051 37 0.0497384299250731 0.631935045364667 830 0.216938946107005 2 1 1 -7.03044062196955 LTS-038 chr19 53999167 53999307 141 * ZNF813 NA 0 NA 0.419 1 NA NA NA NA NA LTS-038 chr19 53999308 54610553 611246 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, OSCAR, ZNF813, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, NA NA NA NA NA NA NA NA NA LTS-038 MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, NLRP12, MYADM) 0.383726274076739 27 0.16347496040086 0.548881544690858 1010 0.234497329454555 1 1 0 -7.00991515168939 LTS-038 NA NA NA NA LTS-038 chr19 54610554 54610667 114 * TFPT NA 0 NA 0.679 1 NA NA NA NA NA LTS-038 chr19 54610668 54720734 110067 * c(LILRB3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.456653680729962 3 0.0532572373798466 0.841362728111425 521 0.227172453015599 2 1 1 -6.76560638492923 LTS-038 chr19 54720735 54926844 206110 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA4, LILRA5, LAIR1, TTYH1, LILRA6) 0.414805500617738 34 0.10154570109938 0.59604858416282 517 0.312350001185881 2 1 1 -6.89191648041935 LTS-038 chr19 54926845 54976702 49858 * c(LENG8, CDC42EP5, TTYH1, LENG9) 0.467628951244169 11 0.0299815094531765 0.782387982425066 272 0.206422576174258 2 1 1 -7.05992903056365 LTS-038 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.356 1 NA NA NA NA NA LTS-038 chr19 55009101 55556587 547487 * c(RNU6-64P, LILRB1, LILRB4, LILRA1, LILRA2, RDH13, KIR3DL3, NLRP7, FCAR, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, LAIR2, GP6, NLRP2, LILRP2, KIR3DX1, NCR1) 0.432499341620884 80 0.0552319390263242 0.539320321398377 1036 0.292557998026953 2 1 1 -7.30327556995215 LTS-038 chr19 55556588 55556675 88 * RDH13 NA 0 NA 0.68 1 NA NA NA NA NA LTS-038 chr19 55556676 56228321 671646 * c(SBK3, ZNF865, RDH13, U2AF2, COX6B2, TMEM190, ZNF524, ZNF784, ZNF579, PPP6R1, HSPBP1, TMEM86B, UBE2S, SSC5D, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, DNAAF3, IL11, TMEM238, ZNF580, ZNF581, PPP1R12C, EPS8L1, NAT14, PTPRH, RPL28, SBK2, SYT5, TNNI3, TNNT1, SHISA7, ISOC2, BRSK1, KMT5C, FIZ1, ZNF628) 0.429546409741605 47 0.0799937439737047 0.781259129150838 2032 0.384512175818944 2 1 1 -6.75636379816968 LTS-038 chr19 56228322 56235326 7005 * NLRP9 NA 0 NA 0.484 1 NA NA NA NA NA LTS-038 chr19 56235327 56249765 14439 * NLRP9 NA 0 NA 0.476292920851969 57 0.0939321296866449 1 NA NA -5.78322350640698 LTS-038 chr19 56249766 56270380 20615 * NLRP9 NA 0 NA 0.026 1 NA NA NA NA NA LTS-038 chr19 56270381 56274431 4051 * RFPL4A 0.38 1 NA 0.218166348852516 39 0.25809257772641 0 0 0 -5.76776857623619 LTS-038 chr19 56274432 56274460 29 * RFPL4A 0.28 1 NA 0.574 1 NA NA NA NA NA LTS-038 chr19 56274461 56573172 298712 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11, RFPL4A, RFPL4AL1) 0.44258414473382 24 0.0417291994526198 0.507217200738732 516 0.212851299003127 2 1 1 -7.45636028469389 LTS-038 chr19 56573173 57347520 774348 * c(ZNF667-AS1, PEG3-AS1, NLRP5, ZNF787, ZFP28, SMIM17, ZNF542P, ZNF582, ZNF583, ZIM2, ZSCAN5B, ZNF582-AS1, ZNF470, PEG3, ZNF444, ZNF471, ZNF71, ZNF667, ZSCAN5A, GALP, ZNF835) 0.443248405869738 25 0.0981537908929995 0.666691338811899 996 0.306321803983012 2 1 1 -6.89064467123969 LTS-038 chr19 57347521 57640058 292538 * c(MIMT1, ZIM2, PEG3, USP29) NA 0 NA 0.447 1 NA NA NA NA NA LTS-038 chr19 57640059 57670749 30691 * c(ZIM3, DUXA, USP29) 0.435456166276645 11 0.0377308651082662 0.51299948819712 150 0.285329428980793 2 1 1 -6.81434051298688 LTS-038 chr19 57670750 57672109 1360 * DUXA NA 0 NA 0.648 1 NA NA NA NA NA LTS-038 chr19 57672110 59082368 1410259 * c(A1BG, LOC100128398, MZF1-AS1, ZNF587B, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, ZNF837, ZNF543, C19orf18, ZNF418, ZNF417, ZNF548, ZNF497, ZNF550, ZNF584, ZSCAN4, FKBP1AP1, ZNF549, ZNF324, CHMP2A, ZNF544, ZNF547, ZIK1, ZNF776, ZSCAN1, ZSCAN22, ZNF530, ZNF773, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF586, ZNF416, ZNF446, VN1R1, ZNF304, RPS5, RNF225, ZSCAN18, AURKC, NA NA NA NA NA NA NA NA NA LTS-038 ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZNF329, ZNF419, ZNF552, ZNF671, ZNF606, ZBTB45, ZNF587, ZNF551, UBE2M, ZNF264) 0.443753596553597 104 0.0458601593931687 0.715207405802283 3237 0.70309649813344 2 1 1 -6.75420515305113 LTS-038 NA NA NA NA LTS-038 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 0.770439581335096 15 0.0798613679775027 2 NA NA -5.76460967771816 LTS-038 chr20 68260 241180 172921 * c(DEFB127, DEFB129, DEFB125, DEFB128, DEFB132, DEFB126) NA 0 NA 1.03278553853587 122 0.361569687151519 3 NA NA -5.76463504730164 LTS-038 chr20 241181 256573 15393 * c(C20orf96, DEFB132) 0.281 1 NA 1.54576491046319 23 0.447990343451828 5 5 0 -5.76441128543305 LTS-038 chr20 256574 1455589 1199016 * c(SDCBP2-AS1, FKBP1A-SDCBP2, RBCK1, SLC52A3, TBC1D20, C20orf96, SRXN1, CSNK2A1, FKBP1A, SDCBP2, SIRPB2, RSPO4, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.215646988792024 42 0.0400524409437388 1.56254277359887 1662 0.627976185959084 6 5 1 -6.78249116132835 LTS-038 chr20 1455590 1559003 103414 * c(SIRPB1, SIRPD, SIRPB2) 0.245154730621035 12 0.027442915959563 1.20485436901717 163 0.694126593271125 5 4 1 -6.85247322518764 LTS-038 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.644 1 NA NA NA NA NA LTS-038 chr20 1559182 1586631 27450 * SIRPB1 NA 0 NA 0.162966417645228 39 0.165010812224978 0 NA NA -5.9713932599178 LTS-038 chr20 1586632 1591938 5307 * SIRPB1 NA 0 NA 0.805 1 NA NA NA NA NA LTS-038 chr20 1591939 3129968 1538030 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, TMC2, C20orf141, SIRPA, STK35, UBOX5, GNRH2, IDH3B, TGM6, OXT, PDYN, AVP, SIRPG, CPXM1, EBF4, PTPRA, FASTKD5, VPS16, PCED1A, MRPS26, SNRPB, SNORA51, SNORD110, TGM3, ZNF343) 0.288851867959275 33 0.0962448345721379 1.21933144600756 1571 0.377857989752701 4 3 1 -6.78128942977725 LTS-038 chr20 3129969 3143443 13475 * c(UBOX5-AS1, UBOX5, FASTKD5, LZTS3) NA 0 NA 1.439 1 NA NA NA NA NA LTS-038 chr20 3143444 10594162 7450719 * c(SNAP25-AS1, MIR103B2, PCNA-AS1, LINC00658, CENPB, CHGB, RNF24, HSPA12B, PROKR2, SLX4IP, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, PLCB1, PRND, LAMP5, SPEF1, C20orf194, TMEM230, ITPA, MIR103A2, PCNA, TRMT6, PLCB4, HAO1, SMOX, CRLS1, C20orf27, AP5S1, FERMT1, PRNP, TMX4, GPCPD1, PAK5, MAVS, ANKEF1, GFRA4, LOC643406, BMP2, DDRGK1, SIGLEC1, SNAP25, LINC01433, PANK2, ADAM33, MKKS, SLC4A11, MCM8, ATRN, NA NA NA NA NA NA NA NA NA LTS-038 CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.27006712460741 126 0.0630622574719643 1.31542953389129 4861 0.501029873711991 4 3 1 -6.9311479788306 LTS-038 NA NA NA NA LTS-038 chr20 10594163 10601944 7782 * SLX4IP NA 0 NA 2.004 1 NA NA NA NA NA LTS-038 chr20 10601945 14306275 3704331 * c(ISM1-AS1, SLX4IP, MACROD2, ISM1, JAG1, BTBD3, FLRT3, LOC339593, ESF1, SPTLC3, TASP1, NDUFAF5, SEL1L2) 0.258769495922706 14 0.0439293263582053 1.64618195715653 1040 0.672582053233088 5 4 1 -6.75036971286857 LTS-038 chr20 14306276 26188981 11882706 * c(C20orf78, LOC100130264, LOC100134868, LINC01432, LOC100270804, PET117, MACROD2-AS1, MIR3192, CST8, SEC23B, POLR3F, RBBP9, DSTN, CSTL1, CST9L, CST9, MACROD2, LINC00261, BANF2, NANP, SCP2D1, CST11, CST1, CST2, CST3, CST4, CST5, NCOR1P1, CST13P, LINC00656, XRN2, CD93, NINL, FLRT3, CFAP61, ABHD12, ZNF337, SNX5, LOC284788, LOC284798, FAM182A, MIR663AHG, LINC00652, NXT1, VSX1, FOXA2, INSM1, LINC00493, FLJ33581, NA NA NA NA NA NA NA NA NA LTS-038 LINC00851, NKX2-2, PAX1, NAA20, PCSK2, CRNKL1, RIN2, DZANK1, KIF16B, KIZ, OTOR, APMAP, RALGAPA2, KAT14, SLC24A3, PYGB, OVOL2, RRBP1, BFSP1, NAPB, GZF1, NKX2-4, SNRPB2, SSTR4, SNORD17, THBD, MIR663A, FAM182B, ZNF133, SYNDIG1, ACSS1, CST7, GGTLC1, MGME1, DTD1, ENTPD6, GINS1) 0.278418558054638 140 0.065683169271823 1.38497058004778 5332 0.506802064320449 4 3 1 -6.94678881402534 LTS-038 NA NA NA NA LTS-038 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.24298852865085 3 0.142605516489838 4 NA NA -5.7644125400295 LTS-038 chr20 29625845 29625852 8 * FRG1BP 0.132 1 NA 2.244 1 NA NA NA NA NA LTS-038 chr20 29625853 30065824 439972 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1) 0.300636668185514 28 0.0938634604430777 1.19197328765757 200 0.501926059140409 4 3 1 -6.74370118933475 LTS-038 chr20 30065825 30070047 4223 * REM1 NA 0 NA 1.361 1 NA NA NA NA NA LTS-038 chr20 30070048 30471988 401941 * c(MCTS2P, MIR3193, HM13-AS1, DUSP15, LINC00028, TTLL9, TPX2, FOXS1, REM1, ID1, BCL2L1, HM13, COX4I2, MYLK2) 0.260937453231145 18 0.0432014962824872 1.56802406392113 567 0.639573523356044 5 4 1 -6.7378707693746 LTS-038 chr20 30471989 30474626 2638 * TTLL9 NA 0 NA 0.992 1 NA NA NA NA NA LTS-038 chr20 30474627 32236868 1762242 * c(TSPY26P, BPIFB6, BPIFA3, BPIFA2, NOL4L, CCM2L, SUN5, LOC149950, COMMD7, BPIFB4, TTLL9, ASXL1, DNMT3B, MAPRE1, POFUT1, C20orf203, HCK, BPIFA4P, XKR7, BPIFB3, BPIFA1, CDK5RAP1, PLAGL2, SNTA1, BPIFB2, PDRG1, CBFA2T2, BPIFB1, KIF3B, TM9SF4) 0.256081707136678 65 0.0792417400451594 1.3319795317855 2696 0.534345695207135 5 4 1 -6.81952495846857 LTS-038 chr20 32236869 32981679 744811 * c(MIR4755, PXMP4, C20orf144, CHMP4B, ACTL10, E2F1, AHCY, RALY, ASIP, NECAB3, ITCH, ZNF341, EIF2S2, CBFA2T2) 0.247041997961598 10 0.120166782246824 1.53064352537654 629 0.481274859585288 5 4 1 -6.73763446394854 LTS-038 chr20 32981680 32996485 14806 * ITCH NA 0 NA 2.35 1 NA NA NA NA NA LTS-038 chr20 32996486 33303235 306750 * c(PIGU, NCOA6, TP53INP2, MIR644A, DYNLRB1, ITCH, MAP1LC3A) 0.123 1 NA 2.11403332542413 465 0.8978225394721 7 7 0 -5.76458267978393 LTS-038 chr20 33303236 35410149 2106914 * c(TGIF2-C20orf24, MIR499B, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, CEP250, HMGB3P1, FAM83C, SOGA1, ROMO1, C20orf173, CNBD2, EPB41L1, DLGAP4, NCOA6, AAR2, TRPC4AP, GGT7, GSS, EIF6, PHF20, SCAND1, ERGIC3, UQCC1, EDEM2, ACSS2, C20orf24, NDRG3, MIR499A, MYH7B, TGIF2, NORAD, SPAG4, DSN1, GDF5, SLA2, CPNE1, NFS1, RBM39) 0.322047635913555 18 0.123396804017892 1.09277437433 3554 0.372977573260005 3 2 1 -6.87457773513256 LTS-038 chr20 35410150 35412834 2685 * SOGA1 0.342 1 NA 0.973839692824345 44 0.43223934024055 3 3 0 -5.76445940201315 LTS-038 chr20 35412835 35517896 105062 * c(SOGA1, TLDC2) 0.367704950250924 4 0.0428135492572153 1.16662761295203 215 0.447617533786293 3 2 1 -6.78167627014964 LTS-038 chr20 35517897 35518636 740 * TLDC2 NA 0 NA 0.94 1 NA NA NA NA NA LTS-038 chr20 35518637 44880155 9361519 * c(ADA, ACOT8, LOC100287792, MIR3646, OSER1-AS1, STK4-AS1, EPPIN-WFDC6, LINC00489, SGK2, WFDC2, SPINT3, BLCAP, TOMM34, SERINC3, UBE2C, PTPRT, PKIG, RBPJL, DNTTIP1, VSTM2L, SNHG11, FITM2, WFDC12, SPATA25, SLC32A1, WFDC3, MROH8, TLDC2, RIMS4, NEURL2, ZSWIM3, WFDC10A, WFDC6, R3HDML, ADIG, GTSF1L, WFDC5, WFDC13, ZHX3, WFDC11, WFDC9, SAMHD1, L3MBTL1, PPP1R16B, SNORA71B, SNORA71A, GHRH, TP53TG5, WFDC10B, HNF4A, NA NA NA NA NA NA NA NA NA LTS-038 LOC339568, ARHGAP40, KCNS1, SNHG17, SPINT4, LBP, MMP9, MYBL2, NNAT, IFT52, OSER1, PIGT, PI3, PLCG1, PLTP, CTSA, DBNDD2, CTNNBL1, EPPIN, RALGAPB, JPH2, SLC12A5, NCOA5, RPRD1B, RBL1, KCNK15, DHX35, RPN2, SDC4, MANBAL, ZNF335, PCIF1, SEMG1, SEMG2, SRSF6, CDH22, LPIN3, SLPI, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, STK4, TGM2, TNNC2, TOP1, YWHAB, SYS1-DBNDD2, GDAP1L1, LINC01260, TTPAL, ACTR5, PABPC1L, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 FAM83D, CHD6, TOX2, KIAA1755, MATN4, WISP2, EMILIN3, SYS1, WFDC8, SNX21, ZSWIM1, CD40, TTI1, MAFB) 0.373320921612841 191 0.0758934420715167 0.951705614436489 8541 0.306768207522043 3 2 1 -7.26741957368223 LTS-038 NA NA NA NA LTS-038 chr20 44880156 44880190 35 * CDH22 0.386 1 NA 1.897 1 NA NA NA NA NA LTS-038 chr20 44880191 47892508 3012318 * c(ZNF663P, LOC100131496, MIR3616, ARFGEF2, TP53RK, OCSTAMP, CSE1L, EYA2, ZMYND8, LINC00494, SLC35C2, DDX27, ZNF334, SULF2, ZNFX1, PREX1, ELMO2, CDH22, SLC13A3, STAU1, MKRN7P, SLC2A10, NCOA3) 0.385495534525536 63 0.0782939274024516 1.01266272454277 2384 0.307721249680798 3 2 1 -6.76188590779403 LTS-038 chr20 47892509 47895478 2970 * c(ZFAS1, ZNFX1) NA 0 NA 1.586 1 NA NA NA NA NA LTS-038 chr20 47895479 49509184 1613706 * c(SNORD12B, TRERNA1, CEBPB, FAM65C, SLC9A8, ADNP, SNORD12C, LINC01270, KCNB1, TMEM189, TMEM189-UBE2V1, ZFAS1, BCAS4, RNF114, PTGIS, PTPN1, SNAI1, SNORD12, MIR645, UBE2V1, PARD6B, B4GALT5, SPATA2) 0.339187261736221 31 0.0505048491230915 1.19952883755355 1454 0.507180718209774 4 3 1 -6.9963021778815 LTS-038 chr20 49509185 49575334 66150 * c(ADNP, DPM1) 0.189 1 NA 1.11878047117289 97 0.403233990634159 3 3 0 -5.76538325259406 LTS-038 chr20 49575335 49576748 1414 * MOCS3 NA 0 NA 1.17804821093878 31 0.19344903471524 4 NA NA -5.76463657777324 LTS-038 chr20 49576749 49576880 132 * MOCS3 NA 0 NA 0.663 1 NA NA NA NA NA LTS-038 chr20 49576881 54572908 4996028 * c(MIR3194, MIR4756, ATP9A, TSHZ2, CBLN4, CYP24A1, MOCS3, KCNG1, SUMO1P1, NFATC2, PFDN4, ZFP64, DOK5, SALL4, ZNF217, BCAS1) 0.154563971526251 41 0.0448224274219949 0.999414211216337 1414 0.377875365710228 3 3 0 -6.84130970949625 LTS-038 chr20 54572909 61942890 7369982 * c(MIR298, SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, CDH4, MIR1257, MIR4325, MIR4326, MIR3196, MTRNR2L3, LOC100506384, SLMO2-ATP5E, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, OGFR-AS1, SYCP2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, FAM210B, PHACTR3, BHLHE23, NKAIN4, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, GCNT7, CBLN4, CTCFL, RBBP8NL, CSTF1, APCDD1L-AS1, GNAS-AS1, LSM14B, CTSZ, APCDD1L, EDN3, FAM209A, NA NA NA NA NA NA NA NA NA LTS-038 SPO11, C20orf166-AS1, SS18L1, MTG2, GNAS, SLCO4A1, C20orf197, MIR646HG, FAM209B, LAMA5, MIR1-1, MIR124-3, MIR133A2, MIR296, MC3R, NTSR1, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, YTHDF1, GID8, PPP1R3D, MRGBP, PPP4R1L, RBM38, ARFGAP1, PSMA7, PMEPA1, CASS4, RAB22A, COL20A1, CDH26, RPS21, SLC17A9, LOC63930, FAM217B, BMP7, AURKA, TAF4, TFAP2C, HAR1A, HAR1B, BIRC7, NPEPL1, TUBB1, ZBP1, CABLES2, RAE1, STX16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 VAPB, OSBPL2) 0.175171265602976 143 0.0489148199219586 0.867112485953145 6710 0.318088652291026 2 2 0 -7.03856896097977 LTS-038 NA NA NA NA LTS-038 chr20 61942891 62121929 179039 * c(CHRNA4, EEF1A2, KCNQ2, COL20A1) 0.137486770062644 8 0.0653097017514025 0.718381935065097 369 0.357308332153707 3 3 0 -6.85348767217334 LTS-038 chr20 62121930 62872290 750361 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, EEF1A2, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, PTK6, SRMS, TCEA2, MIR647, TPD52L2, FNDC11, PPDPF, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.143882237319775 60 0.0482877293135625 1.08413757206115 2235 0.38274857245945 3 3 0 -6.73872873736494 LTS-038 chr20 62872291 62959313 87023 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.10014063442697 121 0.446452665317552 3 NA NA -5.76497269460396 LTS-038 chr21 9825764 9825838 75 * MIR3648-1 0.238 1 NA 2.124 1 NA NA NA NA NA LTS-038 chr21 9825839 11098763 1272925 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.33696142026667 39 0.0749648500628079 0.820065830913504 207 0.586867598294423 3 2 1 -7.05305663742185 LTS-038 chr21 11098764 11098768 5 * c(BAGE, BAGE3) NA 0 NA 0.824 1 NA NA NA NA NA LTS-038 chr21 14745307 14756794 11488 * character(0) 0.46 1 NA 0.807872042007195 9 0.951035196217493 2 2 0 -5.76441112334935 LTS-038 chr21 14756795 15956064 1199270 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13) 0.459747399144576 14 0.0297657521322744 0.708488037237909 369 0.268435482808329 2 1 1 -7.01903638868106 LTS-038 chr21 15956065 27270028 11313964 * c(LINC01549, RNU6-67P, SAMSN1-AS1, BTG3, MIR155HG, CHODL, CXADR, C21orf91-OT1, GABPA, D21S2088E, LINC00515, USP25, LOC339622, APP, LINC00317, LINC00320, LOC388813, MIR99AHG, MIRLET7C, MIR125B2, MIR155, MIR99A, NCAM2, ATP5J, LINC00158, CHODL-AS1, LINC00308, MRPL39, C21orf91, TMPRSS15, JAM2, NRIP1) 0.443361728598124 30 0.0460534921361131 0.920381839430697 1569 0.381101099484059 2 1 1 -7.55100426464818 LTS-038 chr21 27270029 27277203 7175 * APP NA 0 NA 1.62 1 NA NA NA NA NA LTS-038 chr21 27277204 28217446 940243 * c(CYYR1, APP, ADAMTS1) 0.446630364665361 11 0.05379050271022 1.12734813259911 319 0.460768219908098 4 2 2 -6.78823278963706 LTS-038 chr21 28217447 30244549 2027103 * c(MIR4759, ADAMTS5, LINC00161, LINC00314, N6AMT1, LINC00113, ADAMTS1) 0.263 1 NA 1.16517692354729 230 0.429251466853742 3 3 0 -5.83467250114707 LTS-038 chr21 30244550 30244848 299 * N6AMT1 NA 0 NA 1.01978577371088 6 0.185206281390958 3 NA NA -5.76441467148859 LTS-038 chr21 30244849 30830393 585545 * c(RWDD2B, USP16, CCT8, LINC00189, LTN1, N6AMT1, MAP3K7CL, BACH1) 0.262566455139675 17 0.0480085010854389 0.612649009373928 765 0.24667165040593 1 1 0 -6.82066115320015 LTS-038 chr21 30830394 31538692 708299 * c(GRIK1-AS2, CLDN17, GRIK1, GRIK1-AS1) 0.439 1 NA 0.584214707972539 161 0.176405107072449 1 1 0 -5.82259742911462 LTS-038 chr21 31538693 32491267 952575 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.391888165308249 23 0.0504874656694443 0.619197414546154 551 0.201031393874723 2 1 1 -8.1305376397513 LTS-038 chr21 32491268 39672098 7180831 * c(LOC100133286, IL10RB-AS1, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, LINC00159, OLIG2, DSCR4, DSCR3, LINC00310, OLIG1, TCP10L, RCAN1, DYRK1A, MORC3, CLDN14, DSCR9, DSCR10, GART, DONSON, HUNK, HLCS, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, KCNJ6, KCNJ15, PIGP, RIPPLY3, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, SETD4, CLIC6, DNAJC28, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, ITSN1, SIM2, NA NA NA NA NA NA NA NA NA LTS-038 MRPS6, SLC5A3, SOD1, SON, SNORA80A, TIAM1, TTC3, LINC01548, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, DSCR8, URB1-AS1, RUNX1, CBR1, CBR3, SYNJ1, PAXBP1, URB1, CRYZL1, DOPEY2, KCNE2) 0.407595782149804 104 0.0564151864627741 0.806667097102199 6039 0.761849951016806 2 1 1 -6.98516966681563 LTS-038 NA NA NA NA LTS-038 chr21 39672099 40763790 1091692 * c(BRWD1-AS1, ERG, ETS2, NA, HMGN1, KCNJ15, LINC00114, BRWD1, WRB, PSMG1) 0.407096149109552 24 0.042088739070228 0.915878502232377 911 0.341577125665128 3 2 1 -7.08403025876761 LTS-038 chr21 40763791 40765100 1310 * WRB NA 0 NA 0.619 1 NA NA NA NA NA LTS-038 chr21 40765101 41384667 619567 * c(B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, PCP4, SH3BGR, WRB) 0.395701608319452 14 0.0632108368091255 0.704141551095455 392 0.226878589925366 2 1 1 -7.18859851719654 LTS-038 chr21 41384668 45560234 4175567 * c(MIR3197, DSCAM-AS1, MIR4760, DSCAM-IT1, WDR4, HSF2BP, LINC00313, CRYAA, CSTB, SIK1, LINC00479, UMODL1-AS1, DSCAM, PLAC4, RRP1B, BACE2, C2CD2, LINC00323, LINC00319, AATBC, MX1, MX2, NDUFV3, ZBTB21, PDE9A, PKNOX1, UBASH3A, SLC37A1, LINC00112, LINC00111, FAM3B, RIPK4, AGPAT3, PWP2, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TRAPPC10, TMPRSS2, U2AF1, C21orf33, PDXK, RRP1, CBS, RSPH1, UMODL1, ABCG1) 0.411438327599349 76 0.0451302423207523 0.874171999369833 4001 0.283010367724073 2 1 1 -7.29045280127351 LTS-038 chr21 45560235 45560853 619 * C21orf33 NA 0 NA 0.736 1 NA NA NA NA NA LTS-038 chr21 45560854 47924378 2363525 * c(LOC100129027, ITGB2-AS1, LRRC3-AS1, DIP2A-IT1, COL18A1-AS2, ADARB1, FTCD, TSPEAR-AS2, MCM3AP-AS1, COL6A1, COL6A2, DIP2A, POFUT2, ICOSLG, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LSS, PCNT, PFKL, PCBP3, C21orf58, YBEY, TSPEAR, LOC642852, NA NA NA NA NA NA NA NA NA LTS-038 SLC19A1, SUMO3, TRPM2, LINC00163, SSR4P1, UBE2G2, PTTG1IP, C21orf2, COL18A1, LRRC3, C21orf33, SPATC1L, LINC01547, FAM207A, MCM3AP) 0.416489450609979 175 0.0583700037682154 0.773431289891372 3878 0.246574997295809 2 1 1 -6.89589435102676 LTS-038 NA NA NA NA LTS-038 chr21 47924379 47929186 4808 * DIP2A NA 0 NA 0.435 1 NA NA NA NA NA LTS-038 chr21 47929187 48084989 155803 * c(DIP2A, PRMT2, S100B) 0.403420159973111 3 0.07517978451685 0.569961174018069 335 0.226899535231764 2 1 1 -7.11022335917931 LTS-038 chr21 48084990 48084993 4 * PRMT2 NA 0 NA 0.637 1 NA NA NA NA NA LTS-038 chr22 16157787 16157791 5 * character(0) 0.368 1 NA 1.576 1 NA NA NA NA NA LTS-038 chr22 16157792 18138604 1980813 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, OR11H1, SLC25A18) 0.373485734098518 48 0.0626316450446011 0.869443673578494 1111 0.346670034749069 3 2 1 -7.07249532287429 LTS-038 chr22 18138605 18165888 27284 * BCL2L13 NA 0 NA 2.115 1 NA NA NA NA NA LTS-038 chr22 18165889 21096704 2930816 * c(FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, POM121L4P, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, MED15, TUBA8, PI4KA, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, TMEM191B, PI4KAP1, HIRA, NA, UFD1L, NA NA NA NA NA NA NA NA NA LTS-038 ZNF74, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, TMEM191A, KLHL22, DGCR6L, RIMBP3, SCARF2, DGCR2) 0.371641103607523 118 0.0732529432746016 1.0610552386687 4027 0.373767991165683 3 2 1 -6.74122488784833 LTS-038 NA NA NA NA LTS-038 chr22 21096705 21096883 179 * PI4KA NA 0 NA 0.855 1 NA NA NA NA NA LTS-038 chr22 21096884 26343790 5246907 * c(DDTL, MIR301B, LOC100128531, IGLL5, TUBA3FP, ZNF280A, SGSM1, ADORA2A, CRKL, ZNF280B, CRYBB2, CRYBB2P1, CRYBB3, AIFM3, YDJC, ZDHHC8P1, C22orf15, GRK3, CCDC116, DDT, HIC2, SPECC1L, CABIN1, PRAME, SDF2L1, PPIL2, TMEM211, GSTTP1, POM121L1P, FBXW4P1, RGL4, GGT1, GGT5, RSPH14, GNAZ, MIF-AS1, GSTT1, POM121L9P, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC75B, LOC391322, LRRC74B, BCRP2, CHCHD10, NA NA NA NA NA NA NA NA NA LTS-038 MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, PIWIL3, DRICH1, UPB1, PI4KA, MAPK1, SUSD2, BCR, BCRP3, TMEM191C, ADORA2A-AS1, POM121L10P, LL22NC03-63E9.3, CES5AP1, GSTTP2, SLC7A4, SMARCB1, SLC2A11, SNRPD3, TOP1P2, MIR650, UBE2L3, VPREB1, ZNF70, THAP7, LZTR1, GUCD1, MYO18B, KIAA1671, TOP3B, GGTLC2, P2RX6, GUSBP11, DERL3, IGLL3P, LRP5L, SNAP29, RAB36, PPM1F, BMS1P20) 0.37764917359595 163 0.0782887379282908 0.993324996389751 5824 0.457485090474644 3 2 1 -6.77982356581515 LTS-038 NA NA NA NA LTS-038 chr22 26343791 26829349 485559 * c(SEZ6L, ASPHD2, MYO18B) 0.401943273231759 9 0.0554256258422041 0.740292762146893 247 0.26940183952697 2 1 1 -7.09635048947125 LTS-038 chr22 26829350 29755943 2926594 * c(MIR548J, MIR3199-2, MIR3199-1, MIR3653, ZNRF3-AS1, RASL10A, GAS2L1, CHEK2, EMID1, CRYBA4, CRYBB1, HSCB, CCDC117, AP1B1, EWSR1, TTC28, PITPNB, TFIP11, C22orf31, RHBDD3, TTC28-AS1, SRRD, MN1, MIAT, ASPHD2, XBP1, KREMEN1, ZNRF3, TPST2, HPS4) 0.389473917965008 42 0.0479407117874766 1.06395470551185 2178 0.351291530694389 3 2 1 -6.76126726869276 LTS-038 chr22 29755944 29904607 148664 * c(RFPL1S, AP1B1, NEFH, RFPL1, THOC5) 0.390362412762216 5 0.0476791358982102 0.741416392572385 200 0.262272025724031 3 2 1 -6.91733903574584 LTS-038 chr22 29904608 29907028 2421 * THOC5 NA 0 NA 1.064 1 NA NA NA NA NA LTS-038 chr22 29907029 31302451 1395423 * c(MIR3200, SF3A1, HORMAD2, DUSP18, CABP7, RNF215, PES1, SEC14L2, OSBP2, SEC14L3, SEC14L4, UQCR10, SLC35E4, SDC4P, LIF, NF2, OSM, MTFP1, CCDC157, ZMAT5, GATSL3, TCN2, SEC14L6, TBC1D10A, ASCC2, NIPSNAP1, KIAA1656, THOC5, MTMR3, GAL3ST1) 0.393630566456828 43 0.0432592176467215 1.00246609959091 2348 0.339067605997952 3 2 1 -6.81219201895509 LTS-038 chr22 31302452 31302542 91 * OSBP2 NA 0 NA 1.313 1 NA NA NA NA NA LTS-038 chr22 31302543 31796624 494082 * c(MIR3928, PIK3IP1, SELENOM, MORC2-AS1, MORC2, PATZ1, OSBP2, INPP5J, LIMK2, DRG1, PLA2G3, TUG1, SMTN, RNF185) 0.379752014433732 4 0.0952623570287166 1.13673933293901 1004 0.350782852315129 3 2 1 -6.74805861279174 LTS-038 chr22 31796625 31796630 6 * DRG1 NA 0 NA 0.951 1 NA NA NA NA NA LTS-038 chr22 31796631 36678166 4881536 * c(HMGXB4, TOM1, MIR3909, LARGE-AS1, MIR4764, RFPL3S, RFPL3, RFPL2, C22orf42, RBFOX2, RASD2, PISD, APOL2, AP1B1P1, PRR14L, BPIFC, C22orf24, FBXO7, HMOX1, LOC339666, MB, MCM5, MYH9, DRG1, RTCB, EIF4ENIF1, SLC5A1, SLC5A4, TIMP3, YWHAH, APOL6, APOL5, APOL4, APOL3, SYN3, APOL1, ISX, LARGE1, DEPDC5, SFI1) 0.388673964073796 79 0.059235980035252 0.946636093059189 3328 0.333472667623887 3 2 1 -7.01921732621479 LTS-038 chr22 36678167 36678265 99 * MYH9 NA 0 NA 1.109 1 NA NA NA NA NA LTS-038 chr22 36678266 36737618 59353 * MYH9 0.437853028334611 4 0.0849524376734809 1.30880781431191 211 0.360137979463236 4 2 2 -6.73715497796191 LTS-038 chr22 36737619 36744908 7290 * MYH9 NA 0 NA 0.944 1 NA NA NA NA NA LTS-038 chr22 36744909 37876362 1131454 * c(LL22NC01-81G9.3, CACNG2, IFT27, ELFN2, C1QTNF6, CSF2RB, TMPRSS6, TXN2, CYTH4, CARD10, TEX33, IL2RB, MFNG, MPST, MYH9, NCF4, PVALB, RAC2, SSTR3, TST, KCTD17, FOXRED2, EIF3D) 0.388772866598089 36 0.0860562938679427 0.98780858627422 1529 0.329355505647716 3 2 1 -6.76346326133997 LTS-038 chr22 37876363 37876701 339 * c(CARD10, MFNG) NA 0 NA 1.466 1 NA NA NA NA NA LTS-038 chr22 37876702 39928901 2052200 * c(LOC100506472, MIR4534, APOBEC3A_B, DNAL4, TAB1, DDX17, KDELR3, TRIOBP, CDC42EP1, DMC1, ANKRD54, APOBEC3D, CSNK1E, APOBEC3H, APOBEC3A, APOBEC3F, GCAT, CBX6, NPTXR, CBX7, SLC16A8, SH3BP1, MAFF, CBY1, SUN2, TMEM184B, GGA1, SNORD43, APOBEC3C, CARD10, H1F0, KCNJ4, LGALS1, LGALS2, LOC400927, MFNG, MGAT3, ATF4, EIF3L, PDGFB, POLR2F, MIEF1, TOMM22, PDXP, APOBEC3G, RPL3, FAM227A, SOX10, MIR658, MIR659, NOL12, NA NA NA NA NA NA NA NA NA LTS-038 BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, SYNGR1, RPS19BP1, PICK1, GTPBP1, APOBEC3B, JOSD1) 0.378410848781568 63 0.0587893999662107 1.07789530917629 4242 0.746598197336726 3 2 1 -6.73471799560759 LTS-038 NA NA NA NA LTS-038 chr22 39928902 39966816 37915 * CACNA1I NA 0 NA 0.802 1 NA NA NA NA NA LTS-038 chr22 39966817 40391574 424758 * c(FAM83F, ENTHD1, CACNA1I, GRAP2) 0.410337229379216 5 0.0574168964678517 0.931272815395584 515 0.283569417758283 3 2 1 -6.94683659554597 LTS-038 chr22 40391575 40415190 23616 * FAM83F NA 0 NA 0.498 1 NA NA NA NA NA LTS-038 chr22 40415191 40425974 10784 * FAM83F 0.305 1 NA 0.541087551789664 39 0.105743030002275 1 1 0 -5.7644813663561 LTS-038 chr22 40425975 40574170 148196 * c(LOC100130899, FAM83F, TNRC6B) 0.208 1 NA 0.595682988467972 27 0.245329135276234 1 1 0 -5.77507314713717 LTS-038 chr22 40574171 41078839 504669 * c(ADSL, TNRC6B, SGSM3, MCHR1, MKL1) 0.244959809637123 12 0.0520235232341771 0.580721690138307 827 0.176002850526189 1 1 0 -6.90424327334768 LTS-038 chr22 41078840 41165640 86801 * SLC25A17 NA 0 NA 0.893 1 NA NA NA NA NA LTS-038 chr22 41165641 41940516 774876 * c(MIR1281, MIR4766, SLC25A17, TOB2, DNAJB7, CHADL, POLR3H, EP300, ZC3H7B, ACO2, RANGAP1, XPNPEP3, ST13, TEF, L3MBTL2, PHF5A, RBX1) 0.349 1 NA 0.984942015700441 1566 0.315312340086985 3 3 0 -5.78366238036165 LTS-038 chr22 41940517 41967724 27208 * CSDC2 NA 0 NA 0.56 1 NA NA NA NA NA LTS-038 chr22 41967725 42424173 456449 * c(TNFRSF13C, MEI1, WBP2NL, XRCC6, CSDC2, DESI1, LINC00634, MIR33A, SHISA8, SNU13, PMM1, SEPT3, SREBF2, CENPM, C22orf46, CCDC134) 0.170252519401382 21 0.062553558004702 0.683184476100057 1100 0.25405332156237 2 2 0 -6.86807895385142 LTS-038 chr22 42424174 51183255 8759082 * c(LINC01310, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR3201, MIR3619, NUP50-AS1, MIR4763, MIR4762, MIR4535, EFCAB6-AS1, PKDREJ, NUP50, CHKB, PACSIN2, PHF21B, KLHDC7B, CPT1B, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, WBP2NL, CYB5R3, TYMP, FBLN1, GRAMD4, TTLL12, MLC1, KIAA0930, MAPK8IP2, PLXNB2, BRD1, ARHGAP8, SERHL2, TBC1D22A, TTLL1, SAMM50, ATXN10, FAM19A5, SULT4A1, RIBC2, ARFGAP3, NA NA NA NA NA NA NA NA NA LTS-038 RNU12, ATP5L2, SMC1B, RRP7A, MCAT, LOC284933, PARVB, NCAPH2, C22orf34, CHKB-CPT1B, OGFRP1, LINC00207, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, ARSA, LINC00229, DENND6B, PIM3, ODF3B, NAGA, NDUFA6, ACR, GTSE1, A4GALT, MOV10L1, PPARA, FAM118A, TTC38, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, MAPK11, PANX2, MAPK12, SBF1, BIK, PARVG, SYCE3, CERK, EFCAB6, TCF20, TSPO, LOC730668, UPK3A, WNT7B, MPPED1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 ALG12, CRELD2, ADM2, SCUBE1, TRABD, PNPLA3, SELENOO, HDAC10, LDOC1L, POLDIP3, KIAA1644, SHANK3, TUBGCP6, NA, LMF2, SMDT1, RRP7BP, SERHL, CELSR1, PPP6R2, ZBED4, SCO2) 0.170738926234557 240 0.0593210679599176 0.769077037091002 8807 0.273434205497782 2 2 0 -6.86645565714013 LTS-038 NA NA NA NA LTS-038 chr22 51183256 51183804 549 * ACR NA 0 NA 1.09185105676709 11 0.818787329475176 3 NA NA -5.76441087222773 LTS-038 chr22 51183805 51205929 22125 * c(RABL2B, RPL23AP82) NA 0 NA 0.356 1 NA NA NA NA NA LTS-038 chr22 51205930 51220846 14917 * c(RABL2B, RPL23AP82) NA 0 NA 0.469078222714737 67 0.171885407747875 1 NA NA -5.77157690754066 LTS-038 chrX 2699993 2700157 165 * XG 0.281 1 NA 0.649815538438969 3 0.126179765942616 1 1 0 -5.76459299509425 LTS-038 chrX 2700158 3631457 931300 * c(LINC01546, MXRA5, ARSH, ARSD, ARSE, ARSF, PRKX, XG, GYG2) 0.133624096657739 11 0.0173519713315493 0.821315214413919 738 0.308825221953224 3 3 0 -7.16599542780404 LTS-038 chrX 3631458 3735524 104067 * PRKX NA 0 NA 0.347 1 NA NA NA NA NA LTS-038 chrX 3735525 9661419 5925895 * c(MIR4770, MIR4767, FAM9A, FAM9B, VCX, ANOS1, LOC389906, STS, VCX3B, VCX2, VCX3A, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4) 0.204297669373581 4 0.0460181123761793 0.533876501724482 723 0.260103700504381 1 1 0 -7.79233252133642 LTS-038 chrX 9661420 9665267 3848 * TBL1X NA 0 NA 0.921 1 NA NA NA NA NA LTS-038 chrX 9665268 12516859 2851592 * c(CLDN34, MSL3, CLCN4, AMELX, HCCS, SHROOM2, ARHGAP6, MID1, GPR143, WWC3, TBL1X, FRMPD4) 0.185071848591481 12 0.0642600658310125 0.673525604438799 1305 0.219194168208962 2 2 0 -7.62225247094475 LTS-038 chrX 12516860 12627760 110901 * FRMPD4 NA 0 NA 0.402 1 NA NA NA NA NA LTS-038 chrX 12627761 12941263 313503 * c(TLR8-AS1, TLR7, TLR8, PRPS2, FRMPD4) 0.252997972736733 4 0.073468814245683 0.451072221322487 477 0.121847259386853 1 1 0 -7.20377933079281 LTS-038 chrX 12941264 12993243 51980 * c(TLR8-AS1, TLR8, TMSB4X) NA 0 NA 0.505 1 NA NA NA NA NA LTS-038 chrX 12993244 20145146 7151903 * c(GS1-600G8.3, PHKA2-AS1, LINC01203, MIR23C, PIR-FIGF, MIR4768, ADGRG2, SCML2, RAI2, CA5B, BEND2, ASB11, ASB9, MOSPD2, TCEANC, FAM9C, EIF1AX, FANCB, VEGFD, CXorf23, MAP7D2, EGFL6, GLRA2, GPM6B, GRPR, SH3KBP1, CA5BP1, MAP3K15, NHS, PDHA1, PHKA2, PIGA, PPEF1, GEMIN8, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RS1, SCML1, TRAPPC2, MAGEB17, BMX, CDKL5, TMSB4X, LOC729609, S100G, ZRSR2, OFD1, PIR, INE2, AP1S2, NA NA NA NA NA NA NA NA NA LTS-038 REPS2, ATXN3L, RAB9A, SYAP1) 0.253179969238506 39 0.0438186053570695 0.530371203246578 4635 0.194722440512482 1 1 0 -6.92845362784787 LTS-038 NA NA NA NA LTS-038 chrX 20145147 22094608 1949462 * c(SCARNA9L, EIF1AX, CNKSR2, SMPX, KLHL34, YY2, MBTPS2, PHEX, RPS6KA3, SMS) 0.186146745238587 2 0.0289913780286485 0.581804748205512 887 0.205535192811362 2 2 0 -8.70143721846175 LTS-038 chrX 22094609 22095559 951 * PHEX NA 0 NA 0.419 1 NA NA NA NA NA LTS-038 chrX 22095560 32235188 10139629 * c(SUPT20HL1, PTCHD1-AS, ZFX-AS1, PHEX-AS1, PRDX4, IL1RAPL1, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ZNF645, MAGEB6, DDX53, SUPT20HL2, ARX, DMD, NR0B1, EIF2S3, ACOT9, CXorf58, TAB3, GK, MAGEB18, DCAF8L2, MAGEB5, MAGEB1, MAGEB2, MAGEB3, MAGEB4, PDK3, PHEX, FTHL17, POLA1, SAT1, SCARNA23, ZFX, APOO, CXorf21, KLHL15, PCYT1B) 0.281101474237586 43 0.0642689876110499 0.486083541946611 3038 0.191901075468485 1 1 0 -8.46461505482409 LTS-038 chrX 32235189 32305624 70436 * DMD NA 0 NA 0.556 1 NA NA NA NA NA LTS-038 chrX 32305625 34148484 1842860 * c(FAM47A, DMD) 0.228575707937702 3 0.0562168420789832 0.587067276974396 288 0.185848387826851 1 1 0 -7.19827671935013 LTS-038 chrX 34148485 34148490 6 * FAM47A NA 0 NA 0.718 1 NA NA NA NA NA LTS-038 chrX 34148491 35990079 1841589 * c(MAGEB16, FAM47A, FAM47B, NA, TMEM47) 0.375 1 NA 0.878043193863015 272 0.241344722567625 2 2 0 -5.9298277629799 LTS-038 chrX 35990080 35993262 3183 * NA NA 0 NA 0.613 1 NA NA NA NA NA LTS-038 chrX 35993263 45009397 9016135 * c(LOC100132831, ATP6AP2, FUNDC1, CYBB, CXorf38, DDX3X, NA, HYPM, GPR82, GPR34, LINC01281, CFAP47, LANCL3, MPC1L, MAOA, MAOB, FTH1P18, FAM47C, NDP, OTC, BCOR, PRRG1, MID1IP1, NYX, RPGR, DUSP21, NA, DYNLT3, TSPAN7, KDM6A, XK, CXorf36, EFHC2, PPP1R2P9, USP9X, SRPX, CASK, MED14, SYTL5) 0.228046251823454 23 0.0896208526694629 0.565643582168839 3338 0.201403503399753 1 1 0 -7.00642744063506 LTS-038 chrX 45009398 46466452 1457055 * c(LOC392452, ZNF674-AS1, MIR221, MIR222, KRBOX4, CHST7, ZNF674, CXorf36, SLC9A7) NA 0 NA 0.600588640573344 330 0.185811038325795 1 NA NA -5.97681497720847 LTS-038 chrX 46466453 46920599 454147 * c(RP2, LINC01545, SLC9A7, JADE3) 0.493 1 NA 0.686267817787326 303 0.204210091149106 2 2 0 -5.91121880690535 LTS-038 chrX 46920600 47765261 844662 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, ZNF81, ARAF, CXXC1P1, CDK16, CFP, NDUFB11, SYN1, TIMP1, UBA1, ZNF41, ZNF157, USP11, RBM10, UXT, INE1, RGN, JADE3) 0.386115875635328 8 0.0692953049326885 0.747145311244542 1296 0.245044140400122 2 1 1 -7.1737164944695 LTS-038 chrX 47765262 50557013 2791752 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX9, CCDC22, ERAS, ZNF81, KCND1, SPACA5, USP27X, GLOD5, PRICKLE3, MIR188, TBC1D25, FOXP3, PLP2, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, NA, GAGE2B, GAGE13, WDR13, PORCN, SSX1, SSX5, SUV39H1, NA NA NA NA NA NA NA NA NA LTS-038 SYP, MIR532, TFE3, MIR660, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, ZNF182, CACNA1F, MAGIX, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, SLC38A5, PAGE4) 0.350452994063165 23 0.144677643585178 0.6780415018207 3804 0.229199074024162 2 1 1 -7.73109387200186 LTS-038 NA NA NA NA LTS-038 chrX 50557014 50557144 131 * SHROOM4 NA 0 NA 0.814 1 NA NA NA NA NA LTS-038 chrX 50557145 55287031 4729887 * c(MTRNR2L10, HUWE1, MAGED2, PAGE3, RIBC1, XAGE3, XAGE5, NUDT10, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, GSPT2, APEX2, SSX7, SSX8, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, SPANXN5, PFKFB1, GPR173, GNL3L, FAM120C, NUDT11, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, FAM104B, PAGE5, BMP15, MAGED1) 0.302314072567237 34 0.115586653683736 0.969869211163974 3398 0.315275294677974 3 2 1 -7.16534126090104 LTS-038 chrX 55287032 57937169 2650138 * c(MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, FAAH2, ZXDB, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420, ZXDA) NA 0 NA 0.985500709449821 763 0.38805714789292 3 NA NA -5.80695250921849 LTS-038 chrX 61999880 65487686 3487807 * c(MIR1468, VSIG4, AMER1, SPIN4, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, LINC01278, HEPH) 0.344 1 NA 0.922769945987426 1218 0.332934427403988 3 3 0 -6.06526956448682 LTS-038 chrX 65487687 70473188 4985502 * c(MIR676, OTUD6A, CXorf65, AWAT1, AWAT2, DLG3, EDA, EFNB1, KIF4A, GJB1, FAM155B, YIPF6, SNX12, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ARR3, FOXO4, OPHN1, P2RY4, PDZD11, NLGN3, GDPD2, TEX11, EDA2R, BCYRN1, PJA1, SLC7A3, ZMYM3, STARD8, MED12) 0.384863037622188 11 0.0710630961636463 0.942611853670154 2948 0.268304408935692 3 2 1 -7.18724542054309 LTS-038 chrX 70473189 70510377 37189 * c(NONO, BCYRN1, ZMYM3) NA 0 NA 0.766 1 NA NA NA NA NA LTS-038 chrX 70510378 70685679 175302 * c(ITGB1BP2, NONO, BCYRN1, TAF1) 0.461 1 NA 0.743825190335456 390 0.188483796980914 2 2 0 -5.77938449012417 LTS-038 chrX 70685680 70685769 90 * c(BCYRN1, TAF1) NA 0 NA 0.999 1 NA NA NA NA NA LTS-038 chrX 70685770 71934101 1248332 * c(INGX, CXCR3, RGAG4, NHSL2, FLJ44635, LINC00891, RPS26P11, CITED1, PHKA1, PIN4, ERCC6L, HDAC8, BCYRN1, RPS4X, TAF1, OGT, ACRC) 0.443674202517746 5 0.0459042481694233 0.929058051637736 1102 0.350208875465342 2 1 1 -6.86984207774897 LTS-038 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.188 1 NA NA NA NA NA LTS-038 chrX 72066651 72299241 232591 * c(PABPC1L2A, PABPC1L2B, FAM226B) 0.412919192243209 3 0.0370405183549043 0.470408194192427 97 0.300475147779296 0 0 0 -7.46644781839512 LTS-038 chrX 72299242 83403205 11103964 * c(MIR374B, FTX, MIR4328, MIR374C, CDX4, CYSLTR1, COX7B, MAP2K4P1, UPRT, MAGEE2, CYLC1, ZDHHC15, FAM46D, ZCCHC5, ABCB7, BRWD3, RPS6KA6, P2RY10, LPAR4, TTC3P1, PABPC1L2A, KIAA2022, ZCCHC13, PGAM4, MIR374A, NAP1L2, MIR384, TBX22, RLIM, PBDC1, TAF9B, PGK1, CHIC1, ATP7A, POU3F4, ATRX, JPX, MAGEE1, SH3BGRL, NAP1L6, SLC16A2, MIR545, MIR421, XIST, HMGN5, MAGT1, GPR174, FGF16, TSIX, ITM2A) 0.383459918768816 25 0.129463315267299 0.95292490331883 3575 0.33274158863057 3 2 1 -7.25532708691824 LTS-038 chrX 83403206 83411034 7829 * RPS6KA6 NA 0 NA 0.619 1 NA NA NA NA NA LTS-038 chrX 83411035 90693597 7282563 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, PABPC5, RPS6KA6, SATL1, CPXCR1, KLHL4, ZNF711, POF1B, TGIF2LX) 0.427860682271471 22 0.0501062075458923 0.796239227200487 1181 0.289966204437413 2 1 1 -6.80207364132923 LTS-038 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.51 1 NA NA NA NA NA LTS-038 chrX 91066177 91878053 811877 * PCDH11X 0.385197698830776 7 0.115642305654734 0.60337029494675 301 0.525985256331567 2 1 1 -7.02421088948999 LTS-038 chrX 91878054 99924361 8046308 * c(DIAPH2, SRPX2, PCDH11X, FAM133A, RPA4, XRCC6P5, NAP1L3, PCDH19, TNMD, BRDTP1, TSPAN6) 0.44035266337433 3 0.00754983443527073 0.852354013835492 770 0.2427767754698 2 1 1 -7.26995260036634 LTS-038 chrX 99924362 99925828 1467 * SRPX2 NA 0 NA 0.626 1 NA NA NA NA NA LTS-038 chrX 99925829 101609367 1683539 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, CSTF2, TCEAL6, TIMM8A, DRP2, CENPI, NOX1, GLA, SRPX2, HNRNPH2, BEX5, ARL13A, XKRX, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, TMEM35A, RPL36A, BTK, TRMT2B, ZMAT1, SYTL4, ARMCX2) 0.43889801307433 22 0.0514408835671055 0.689788968064966 1865 0.21621839122219 2 1 1 -7.17306635967337 LTS-038 chrX 101609368 101615284 5917 * character(0) NA 0 NA 0.041 1 NA NA NA NA NA LTS-038 chrX 101615285 101625080 9796 * character(0) NA 0 NA 0.192241761711283 40 0.235419852712727 0 NA NA -5.78395376077876 LTS-038 chrX 101625081 140993264 39368184 * c(ZBTB33, MIR450B, MIR934, LINC00892, LINC00633, TEX13C, FGF13-AS1, PRR32, LINC00630, MIR1912, MIR1298, MIR320D2, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, LINC00629, ARMCX5-GPRASP2, MIR3978, HS6ST2-AS1, TENM1, CDR1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, PGRMC1, TMSB15A, MID2, SLC6A14, GPRASP2, ATG4A, COL4A5, COL4A6, MAGEC3, DCAF12L1, PIH1D3, MUM1L1, FAM199X, ADGRG4, ACTRT1, GPR119, NA NA NA NA NA NA NA NA NA LTS-038 RBMXL3, DOCK11, RAB40A, AMOT, LINC00889, ARHGAP36, AKAP14, RHOXF1, NKAPP1, H2BFWT, FAM122B, FAM122C, DCX, ZCCHC12, NA, NA, TSC22D3, AGTR2, ELF4, CT83, SLC25A43, NRK, INTS6L, ZNF449, TMEM31, F9, ACSL4, GPC4, FGF13, FHL1, SEPT6, ATP1B4, KCNE5, LDOC1, CT47A11, FAM127B, IL1RAPL2, SNORA69, SNORD61, BEX3, GPC3, RBMX, HTATSF1, GLUD2, RAB40AL, ATP11C, LINC00632, H2BFM, LOC286437, FIRRE, TMSB15B, GRIA3, MCTS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 C1GALT1C1, SLC25A5, GUCY2F, HPRT1, XIAP, HTR2C, TCEAL5, MORF4L2-AS1, VSIG1, DCAF12L2, ZCCHC16, LHFPL1, SOWAHD, OR13H1, CCDC160, CXorf66, IGSF1, IL13RA1, IL13RA2, LOC389895, LAMP2, SMIM10L2A, SLC25A53, LINC00890, SH2D1A, MIR106A, MIR19B2, MIR92A2, MCF2, GLRA4, FAM127C, CT45A3, CT45A5, NDUFA1, MIR424, OCRL, PAK3, ZDHHC9, TCEAL9, RAB9B, LUZP4, TFDP3, VGLL1, RBMX2, STK26, PLP1, PLS3, CT45A6, CT45A1, SASH3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 WDR44, NUP62CL, TBC1D8B, CT55, TMEM255A, CXorf57, RBM41, MIR448, MIR450A1, SAGE1, ZNF280C, MBNL3, BEX1, NXT2, NKRF, NXF4, NXF3, TEX13B, TEX13A, MOSPD1, BEX4, PRPS1, TCEAL7, PSMD10, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, MIR504, MIR505, KIAA1210, RGAG1, LRCH2, RAP2C, RPL39, SPANXA2-OT1, BCORL1, CXorf56, CT47B1, ZCCHC18, SMIM10, SMIM10L2B, SPANXC, ARMCX5, UPF3B, CT47A7, SMARCA1, MIR542, SOX3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 SRD5A1P1, SNORA35, BRS3, SERPINA7, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, CT45A2, UBE2A, XPNPEP2, ZIC3, ZNF75D, MIR766, RNF113A, NKAP, RNF128, MAP7D3, MORC4, LONRF3, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, GPR101, USP26, TMEM164, PHF6, CUL4B, BEX2, IRS4, MIR503HG, TCEAL3, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, KLHL13, CLDN2, TCEAL8, AIFM1, CHRDL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-038 RIPPLY1, TCEAL1, MMGT1, RAB33A, ARHGEF6, CD40LG, MORF4L2, GPRASP1, MAGEC1, AMMECR1) 0.43782386793405 157 0.0622140290902777 0.767343902581747 16695 0.271934615659994 2 1 1 -7.21440194269971 LTS-038 NA NA NA NA LTS-038 chrX 140993265 140993751 487 * MAGEC1 0.304 1 NA 0.634355325182815 11 0.319277736034432 1 1 0 -5.76447273460029 LTS-038 chrX 140993752 142605374 1611623 * c(SPANXN3, SPANXN4, MAGEC2, MAGEC1) 0.330799284608203 6 0.091618229627078 0.739947289576432 149 0.426498151918267 1 1 0 -7.43480779321213 LTS-038 chrX 142605375 142710573 105199 * character(0) NA 0 NA 1.139 1 NA NA NA NA NA LTS-038 chrX 142710574 148628393 5917820 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, LINC00893, CXorf51B, MIR514B, SLITRK4, FMR1NB, FMR1, AFF2, IDS, UBE2NL, SPANXN1, SPANXN2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SLITRK2, TMEM257, CXorf40A) 0.357843527587214 15 0.0657929653208782 1.07728697878465 1317 0.385907071109864 3 2 1 -6.81261323328979 LTS-038 chrX 148628394 148664783 36390 * CXorf40A NA 0 NA 0.590086234835605 50 0.30217339865902 1 NA NA -5.7657761736513 LTS-038 chrX 148664784 149014630 349847 * c(MAGEA8-AS1, MAGEA8, MAGEA11, TMEM185A) 0.356187768842762 2 0.0162634559672906 0.950511089779288 147 0.413379431936238 6 4 2 -7.23843230153725 LTS-038 chrX 149014631 149097209 82579 * MAGEA8-AS1 NA 0 NA 0.386 1 NA NA NA NA NA LTS-038 chrX 149097210 149100892 3683 * CXorf40B NA 0 NA 0.549910757220594 42 0.268894769775359 1 NA NA -5.76441092297032 LTS-038 chrX 149100893 151825944 2725052 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.381421258667976 15 0.0409701401138974 1.09567732616942 1502 0.48296639558335 3 2 1 -6.74685552505635 LTS-038 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.246 1 NA NA NA NA NA LTS-038 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.350103916019121 7 0.0487305516761986 0.764738437378691 124 0.491566011557814 6 4 2 -6.87896647953738 LTS-038 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 1.076 1 NA NA NA NA NA LTS-038 chrX 151995517 154507173 2511657 * c(SMIM9, CMC4, NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, RAB39B, CLIC2, GAB3, PNCK, ZFP92, TEX28, DKC1, DNASE1L1, DUSP9, EMD, ABCD1, F8, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, MPP1, MTCP1, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, FUNDC2, NA NA NA NA NA NA NA NA NA LTS-038 SSR4, SNORA36A, SNORA56, TAZ, VBP1, ZNF185, BRCC3, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A, FAM58A) 0.357167102771855 51 0.0645071329085275 1.15046484639958 5218 0.395789749888196 3 2 1 -6.88282917480112 LTS-038 NA NA NA NA LTS-038 chrX 154507174 154563742 56569 * CLIC2 NA 0 NA 0.857444571245603 32 0.153880763302357 2 NA NA -5.77161552245612 LTS-038 chrX 154563743 154580211 16469 * CLIC2 NA 0 NA 0.523742594251336 40 0.479745679821812 1 NA NA -5.76449202909007 LTS-038 chrX 154580212 154774986 194775 * TMLHE NA 0 NA 1.45659655081129 39 3.09688555732944 5 NA NA -5.76446069742204 LTS-038 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.379592502809278 25 0.226585870403842 0 NA NA -6.22789669130309 LTS-038 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 1.47701193285265 19 0.904706233216646 5 NA NA -5.77903963554873 LTS-038 chr1 65893 878331 812439 * c(LOC100130417, LOC100288069, SAMD11, FAM41C, LINC01128, LOC729737, OR4F5, LINC00115) 0.036 1 NA 1.57873082427808 87 0.713680189574559 8 8 0 -5.76486656053561 LTS-039 chr1 878332 1236038 357707 * c(ACAP3, UBE2J2, B3GALT6, SAMD11, LINC01342, TTLL10, NOC2L, KLHL17, AGRN, FAM132A, RNF223, MIR200A, MIR200B, SDF4, C1orf159, MIR429, HES4, SCNN1D, TNFRSF4, PLEKHN1, PERM1, TNFRSF18, ISG15) 0.0496956364073438 8 0.0279540439190571 1.19041390034725 1370 0.566096564557054 8 8 0 -6.80127313449786 LTS-039 chr1 1236039 1412620 176582 * c(ACAP3, PUSL1, LOC148413, DVL1, ATAD3C, ANKRD65, MXRA8, CPSF3L, AURKAIP1, MRPL20, TMEM88B, VWA1, CPTP, CCNL2, TAS1R3, ATAD3B) 0 2 0 1.63656366930826 891 0.699319698719342 0 0 0 -Inf LTS-039 chr1 1412621 1412700 80 * ATAD3B NA 0 NA 0.991 1 NA NA NA NA NA LTS-039 chr1 1412701 1593768 181068 * c(MIB2, SSU72, TMEM240, ATAD3A, FNDC10, SLC35E2B, ATAD3B, MMP23B, CDK11B) 0.260220363561271 12 0.186102855236755 1.31748729604419 630 0.918311866680011 5 4 1 -6.74126155905984 LTS-039 chr1 1593769 1593784 16 * c(SLC35E2B, CDK11B) NA 0 NA 1.858 1 NA NA NA NA NA LTS-039 chr1 1593785 1603048 9264 * c(SLC35E2B, CDK11B) 0.243418570837705 5 0.200660658824793 2.77193182864851 98 1.2714506617614 13 10 3 -6.73352541002421 LTS-039 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 1.207 1 NA NA NA NA NA LTS-039 chr1 1606859 1639066 32208 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.054368464218002 5 0.0215939806427625 0.993026226391597 91 0.692307307176667 8 8 0 -6.74610212494345 LTS-039 chr1 1639067 1639575 509 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.463 1 NA NA NA NA NA LTS-039 chr1 1639576 1645035 5460 * c(CDK11A, SLC35E2B, CDK11B) 0 1 NA 1.0769147372765 13 1.59738179210344 5 5 0 -5.76441015950173 LTS-039 chr1 1645036 1646772 1737 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.413778434858695 37 0.413774107469295 1 NA NA -5.76457876198229 LTS-039 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 1.651 1 NA NA NA NA NA LTS-039 chr1 1647807 1647814 8 * c(CDK11A, SLC35E2B, CDK11B) 0.436 1 NA 1.484 1 NA NA NA NA NA LTS-039 chr1 1647815 1658882 11068 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.45449705332829 11 0.0594257366956286 1.61902563797104 50 0.677631921338072 8 4 4 -6.82777737271745 LTS-039 chr1 1658883 1658945 63 * c(SLC35E2B, SLC35E2) 0.015 1 NA 2.95623338696624 3 0.874461167424451 15 15 0 -5.76441017068878 LTS-039 chr1 1658946 1850426 191481 * c(CALML6, GNB1, TMEM52, NADK, SLC35E2B, SLC35E2) 0.106129162706494 25 0.0997332609179773 1.31663188991504 360 0.751321962066862 4 4 0 -6.77083826519293 LTS-039 chr1 1850427 1850428 2 * TMEM52 0.069 1 NA 0.112 1 NA NA NA NA NA LTS-039 chr1 1850429 2116920 266492 * c(FAAP20, GABRD, TMEM52, PRKCZ, CFAP74) 0.0930587625237615 19 0.0287770213723437 0.872427412121948 418 0.421059783742954 4 4 0 -6.73711012067244 LTS-039 chr1 2116921 2117425 505 * FAAP20 NA 0 NA 1.662 1 NA NA NA NA NA LTS-039 chr1 2117426 2344064 226639 * c(LOC100129534, RER1, FAAP20, PEX10, SKI, MORN1) 0.0499898508643589 6 0.0262881468853677 1.30251233469681 415 0.540480928101828 8 8 0 -6.76066922769426 LTS-039 chr1 2344065 2399031 54967 * character(0) NA 0 NA 0.743 1 NA NA NA NA NA LTS-039 chr1 2399032 2447238 48207 * c(PANK4, PLCH2) 0.0813520203492053 9 0.0344665699547321 0.654819861277175 234 0.266594815482459 5 5 0 -6.83256193656225 LTS-039 chr1 2447239 2449592 2354 * PANK4 NA 0 NA 1.235 1 NA NA NA NA NA LTS-039 chr1 2449593 2576943 127351 * c(NA, TTC34, LOC115110, FAM213B, HES5, PANK4, MMEL1, TNFRSF14) 0.0779671112721483 21 0.0360832371053374 1.01754512935866 377 0.460930946676075 5 5 0 -6.73480060250487 LTS-039 chr1 2576944 2577005 62 * TTC34 NA 0 NA 0.809 1 NA NA NA NA NA LTS-039 chr1 2577006 3428770 851765 * c(TTC34, MIR4251, ACTRT2, MEGF6, ARHGEF16, LINC00982, PRDM16) 0.132984703530208 9 0.117075830127315 0.725633289665633 561 0.389660846521617 3 3 0 -6.742365226095 LTS-039 chr1 3428771 3431029 2259 * MEGF6 NA 0 NA 1.411 1 NA NA NA NA NA LTS-039 chr1 3431030 6155509 2724480 * c(LINC01134, MIR4689, MIR4417, TPRG1L, CCDC27, DFFB, MEGF6, NPHP4, LOC284661, C1orf174, SMIM1, WRAP73, AJAP1, TP73-AS1, LRRC47, MIR551A, TP73, LINC01346, KCNAB2, CEP104) 0.071941403833442 17 0.0482351775464875 0.953947855402305 1091 0.546865456499901 5 5 0 -6.82057911371379 LTS-039 chr1 6155510 6173163 17654 * c(CHD5, KCNAB2) 0.118 1 NA 0.567430233724004 132 0.217843344145467 2 2 0 -5.76540471065912 LTS-039 chr1 6173164 6173471 308 * CHD5 NA 0 NA 1.463 1 NA NA NA NA NA LTS-039 chr1 6173472 6246352 72881 * c(CHD5, RPL22) 0.1063133255777 6 0.0199139816879163 0.92127103039202 203 0.46826776168103 4 4 0 -6.91124935614069 LTS-039 chr1 6246353 6246844 492 * RPL22 NA 0 NA 2.215 1 NA NA NA NA NA LTS-039 chr1 6246845 6304471 57627 * c(ICMT, RNF207, HES3, RPL22) 0.0510321321371315 7 0.00571130874835599 1.56679788920244 227 0.739429670023351 8 8 0 -6.78374065841692 LTS-039 chr1 6304472 6341406 36935 * c(ACOT7, GPR153, HES3) 0.101651264895646 5 0.0275916654082351 0.807265332157555 121 0.241295004509215 4 4 0 -6.76838426872233 LTS-039 chr1 6341407 7887249 1545843 * c(MIR4252, ACOT7, PHF13, CAMTA1, ZBTB48, HES2, DNAJC11, PLEKHG5, NOL9, TAS1R1, ESPN, TNFRSF25, PER3, THAP3, VAMP3, KLHL21) 0.0760234917469829 21 0.0368917334913934 1.19917967790846 1643 0.514573418427801 6 6 0 -6.76890332372434 LTS-039 chr1 7887250 7995237 107988 * c(UTS2, TNFRSF9, PER3) 0.0962234146619905 4 0.0268141753555839 0.793717369896091 161 0.350009659582764 4 4 0 -6.74089597604841 LTS-039 chr1 7995238 7997657 2420 * TNFRSF9 NA 0 NA 1.235 1 NA NA NA NA NA LTS-039 chr1 7997658 8938801 941144 * c(PARK7, ENO1, TNFRSF9, RERE, SLC45A1, ERRFI1) 0.0814295155312127 12 0.0283307039778186 1.38121486308785 515 0.602409778958933 5 5 0 -6.83468482370591 LTS-039 chr1 8938802 9005828 67027 * c(ENO1-AS1, ENO1) NA 0 NA 0.826 1 NA NA NA NA NA LTS-039 chr1 9005829 9787770 781942 * c(SLC2A7, TMEM201, MIR34A, PIK3CD, PIK3CD-AS1, SLC2A5, CA6, GPR157, SPSB1, SLC25A33, H6PD) 0.0575887671906449 24 0.0273908571967183 1.04001686191615 1059 0.494485053062626 6 6 0 -6.88196179106058 LTS-039 chr1 9787771 10480095 692325 * c(UBE4B, RBP7, CLSTN1, KIF1B, PGD, PIK3CD, CTNNBIP1, NMNAT1, LZIC) 0.0569322935686282 9 0.04492339158068 1.26089466247163 1143 0.623090700610568 7 7 0 -6.75222077309696 LTS-039 chr1 10480096 11140976 660881 * c(APITD1-CORT, MASP2, CORT, C1orf127, DFFA, TARDBP, CENPS, PEX14, PGD, EXOSC10, CASZ1, SRM) 0 1 NA 1.55678332551451 809 0.835547100446225 8 8 0 -5.765139561403 LTS-039 chr1 11140977 11141133 157 * EXOSC10 NA 0 NA 1.733 1 NA NA NA NA NA LTS-039 chr1 11141134 11860453 719320 * c(MTOR-AS1, ANGPTL7, MAD2L2, MTOR, FBXO2, FBXO6, UBIAD1, DRAXIN, MTHFR, EXOSC10, AGTRAP, DISP3, FBXO44) 0.0863949368233821 38 0.034338298977547 1.02017147602865 1369 0.515784234904668 5 5 0 -6.76273135601584 LTS-039 chr1 11860454 11861225 772 * MTHFR NA 0 NA 1.708 1 NA NA NA NA NA LTS-039 chr1 11861226 11867292 6067 * c(CLCN6, MTHFR) NA 0 NA 1.98287497005797 45 0.964712680312411 10 NA NA -5.76441020433835 LTS-039 chr1 11867293 11875835 8543 * CLCN6 NA 0 NA 0.718 1 NA NA NA NA NA LTS-039 chr1 11875836 11919111 43276 * c(NPPA-AS1, CLCN6, NPPA, NPPB) 0.0915080666151703 2 0.00989949493661166 0.715023106695082 227 0.338018735096455 4 4 0 -6.83102145305553 LTS-039 chr1 11919112 11971181 52070 * character(0) NA 0 NA 2.762 1 NA NA NA NA NA LTS-039 chr1 11971182 12012800 41619 * c(PLOD1, KIAA2013) 0.0591878666727268 6 0.0287940966171887 1.42793076794148 103 0.57917414766036 7 7 0 -6.73304453657077 LTS-039 chr1 12012801 12014531 1731 * PLOD1 NA 0 NA 0.591 1 NA NA NA NA NA LTS-039 chr1 12014532 12423294 408763 * c(MIR4632, PLOD1, VPS13D, MIIP, TNFRSF1B, TNFRSF8, MFN2) 0.106080765759517 15 0.04458090558588 0.817882670987227 816 0.306498774995496 4 4 0 -6.78733126801582 LTS-039 chr1 12423295 12428514 5220 * VPS13D NA 0 NA 1.295 1 NA NA NA NA NA LTS-039 chr1 12428515 12725943 297429 * c(AADACL4, VPS13D, SNORA59B, DHRS3) 0.0773019171993231 5 0.014532721699668 1.37933462941795 240 0.529000331389482 5 5 0 -6.78425309247769 LTS-039 chr1 12725944 12726021 78 * AADACL4 NA 0 NA 0.728 1 NA NA NA NA NA LTS-039 chr1 12726022 12854544 128523 * c(AADACL3, AADACL4, PRAMEF12, PRAMEF1, C1orf158) 0.0526752570187774 3 0.0669726312259966 0.636472165732713 229 0.440312788808193 5 5 0 -6.93248212105986 LTS-039 chr1 12854545 12907350 52806 * c(HNRNPCL1, PRAMEF11, HNRNPCL3, PRAMEF1) 0.418 1 NA 0.556490615444245 21 0.297915112550059 2 2 0 -5.76520842808526 LTS-039 chr1 12907351 13183966 276616 * c(HNRNPCL1, PRAMEF10, PRAMEF4, PRAMEF6, HNRNPCL2, HNRNPCL3, PRAMEF2, PRAMEF22) 0.301081571906817 15 0.0997507369587289 0.793235241420745 67 0.559104697185775 4 3 1 -6.74104031960178 LTS-039 chr1 13183967 13801879 617913 * c(LRRC38, PRAMEF9, PRAMEF17, PRAMEF13, NA, HNRNPCL2, PRAMEF19, PRAMEF20, NA) 0.021 1 NA 0.472395540746645 32 0.315409149283297 2 2 0 -5.81460415366332 LTS-039 chr1 13801880 13840546 38667 * LRRC38 0.0830473118912124 3 0.113852243426879 0.623672656035578 38 0.523315510715414 4 4 0 -6.7507839381337 LTS-039 chr1 13840547 13882431 41885 * character(0) NA 0 NA 0.733 1 NA NA NA NA NA LTS-039 chr1 13882432 15546200 1663769 * c(PDPN, TMEM51-AS1, KAZN, TMEM51, PRDM2) 0.0878602030196104 21 0.0358379288304604 0.832538338576892 632 0.512353735986529 4 4 0 -6.77668176467661 LTS-039 chr1 15546201 15546341 141 * TMEM51 NA 0 NA 0.98 1 NA NA NA NA NA LTS-039 chr1 15546342 15714650 168309 * c(FHAD1, TMEM51) 0.107791889965281 5 0.0134275835502893 1.14342824599286 200 0.520547503588733 13 12 1 -6.97295663168536 LTS-039 chr1 15714651 15714857 207 * FHAD1 NA 0 NA 0.627 1 NA NA NA NA NA LTS-039 chr1 15714858 15832651 117794 * c(CTRC, FHAD1, CELA2B, CELA2A, EFHD2, CASP9) 0.115576010929946 4 0.043820657229211 0.64531959613048 281 0.413440230565589 3 3 0 -6.74166898557123 LTS-039 chr1 15832652 15833365 714 * CASP9 NA 0 NA 1.062 1 NA NA NA NA NA LTS-039 chr1 15833366 16475058 641693 * c(CLCNKA, CLCNKB, C1orf64, EPHA2, SPEN, PLEKHM2, DNAJC16, HSPB7, SLC25A34, FAM131C, TMEM82, UQCRHL, FBLIM1, RSC1A1, FLJ37453, ZBTB17, AGMAT, CASP9, DDI2) 0.134552110997655 43 0.113344387448664 0.888890048940958 1581 4.90662982310818 10 9 1 -6.74319949015909 LTS-039 chr1 16475059 16577908 102850 * c(ARHGEF19, EPHA2, FBXO42, RSG1) 0.0483604028341047 5 0.0281424945589406 1.30880237771671 285 0.587993688118428 9 9 0 -6.75142108398068 LTS-039 chr1 16577909 16577978 70 * FBXO42 NA 0 NA 0.824 1 NA NA NA NA NA LTS-039 chr1 16577979 16723084 145106 * c(SZRD1, SPATA21, FBXO42) 0.105945975526794 2 0.0197989898732233 0.78929746281324 128 0.242373531104815 4 4 0 -6.9235441406141 LTS-039 chr1 16723085 16862454 139370 * c(CROCCP3, SZRD1, SPATA21, NECAP2) 0.45 1 NA 0.710965850793541 185 0.347443215101877 3 3 0 -5.76441024733096 LTS-039 chr1 16862455 17010264 147810 * c(MST1P2, NBPF1, CROCCP2) 0.323918905724252 23 0.119429275216155 0.608827281581377 182 0.363484407278063 3 2 1 -6.84154910573304 LTS-039 chr1 17010265 17046605 36341 * ESPNP 0.238246519163248 20 0.198905319978601 1.18066166023865 128 0.590992431068467 5 4 1 -6.73492918629738 LTS-039 chr1 17046606 17081541 34936 * c(MST1L, ESPNP, CROCC) NA 0 NA 0.623 1 NA NA NA NA NA LTS-039 chr1 17081542 17087248 5707 * c(MST1L, CROCC) 0.228547455048238 21 0.168964070567849 0.59429507921988 165 0.575737029296517 1 1 0 -6.73998960327691 LTS-039 chr1 17087249 17087262 14 * c(MST1L, CROCC) NA 0 NA 0.756 1 NA NA NA NA NA LTS-039 chr1 17087263 17197619 110357 * c(MST1L, CROCC) 0.268657711416139 9 0.158853006826367 1.09527415760824 32 0.495896154419191 5 4 1 -6.74370091497372 LTS-039 chr1 17197620 17251055 53436 * CROCC 0.078 1 NA 0.829409275449821 33 0.359923263601866 4 4 0 -5.76570850362221 LTS-039 chr1 17251056 17282733 31678 * CROCC 0.100917096306714 3 0.0753679861302751 0.967052947677761 95 0.559453083994976 4 4 0 -6.73675571957505 LTS-039 chr1 17282734 17285081 2348 * CROCC NA 0 NA 2.533 1 NA NA NA NA NA LTS-039 chr1 17285082 17299280 14199 * CROCC 0.0106101751122025 2 0.0169705627484771 1.69522427083567 64 1.17503712707301 20 20 0 -7.01971802028414 LTS-039 chr1 17299281 17934477 635197 * c(PADI2, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PADI3, ARHGEF10L, RCC2, SDHB, CROCC) 0.122738826611694 26 0.0703840563239672 0.875522741082168 939 0.435769732238572 3 3 0 -6.81975527943293 LTS-039 chr1 17934478 17939549 5072 * ARHGEF10L NA 0 NA 0.639 1 NA NA NA NA NA LTS-039 chr1 17939550 19199189 1259640 * c(KLHDC7A, PAX7, ARHGEF10L, TAS1R2, ACTL8, IGSF21, ALDH4A1) 0.109408976962812 22 0.0679331221931474 0.660886572623708 622 0.422461504615978 3 3 0 -6.76891221477105 LTS-039 chr1 19199190 19199221 32 * ALDH4A1 0.098 1 NA 1.966 1 NA NA NA NA NA LTS-039 chr1 19199222 19404585 205364 * c(MIR4695, IFFO2, UBR4, ALDH4A1) 0.059437528803715 9 0.0347806619322353 1.05361676129565 266 0.556442022739266 7 7 0 -6.77046136191962 LTS-039 chr1 19404586 19407894 3309 * UBR4 NA 0 NA 0.765 1 NA NA NA NA NA LTS-039 chr1 19407895 22139021 2731127 * c(LOC100506730, LOC100506801, MINOS1-NBL1, VWA5B1, UBXN10, FAM43B, DDOST, ECE1, AKR7A3, EMC1, OTUD3, UBR4, AKR7L, ALPL, TMCO4, PLA2G2D, PLA2G2E, HTR6, LINC01141, PLA2G2C, SH2D5, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, RNF186, PQLC2, CAMK2N1, KIF17, RAP1GAP, RPS14P3, PLA2G2F, PINK1, MUL1, CAPZB, USP48, NBPF3, AKR7A2, EIF4G3, CDA) 0.132220727453967 86 0.0949220869933821 0.807919049624047 3874 0.38672996090823 3 3 0 -6.91669359970261 LTS-039 chr1 22139022 22216604 77583 * c(HSPG2, LDLRAD2) 0.105735251325639 14 0.0352336783193593 0.617219967877945 540 0.269749705838401 3 3 0 -6.8356545603567 LTS-039 chr1 22216605 22332332 115728 * c(CELA3A, CELA3B, HSPG2) 0.248 1 NA 0.551688745754721 105 0.245549620105725 2 2 0 -5.76612780850954 LTS-039 chr1 22332333 22336764 4432 * c(CELA3A, CELA3B) 0.246 1 NA 0.51363245541744 24 0.329237390127505 2 2 0 -5.76443660183773 LTS-039 chr1 22336765 22404829 68065 * c(CELA3A, LINC00339, CDC42) NA 0 NA 0.797 1 NA NA NA NA NA LTS-039 chr1 22404830 22852834 448005 * c(WNT4, ZBTB40, CDC42) 0.386971463155482 5 0.0563577856200898 1.04477247848104 229 0.399728202685738 5 3 2 -6.80950308466004 LTS-039 chr1 22852835 23285499 432665 * c(MIR4253, MIR4684, EPHA8, EPHB2, C1QA, C1QB, C1QC, ZBTB40) 0.302290616850189 11 0.115941442900363 0.740357440504712 519 0.373543210400389 4 3 1 -6.79772462825911 LTS-039 chr1 23285500 23286415 916 * character(0) NA 0 NA 1.059 1 NA NA NA NA NA LTS-039 chr1 23286416 26233002 2946587 * c(MIR3115, MIR3917, TCEB3-AS1, MIR378F, RCAN3AS, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, PAQR7, E2F2, KDM1A, TMEM50A, FUCA1, GALE, MDS2, CLIC4, SYF2, LDLRAP1, LOC284632, HMGCL, HTR1D, ID3, STMN1, NCMAP, TMEM57, ASAP3, PNRC2, MTFR1L, RSRP1, PITHD1, MAN1C1, NIPAL3, SELENON, GRHL3, IL22RA1, RHCE, RHD, RPL11, LOC646471, TCEA3, TCEB3, C1orf234, LUZP1, AUNIP, ZNF436, RUNX3, STPG1 NA NA NA NA NA NA NA NA NA LTS-039 ) 0.35840809983509 64 0.0917780478624624 0.968461121771531 4051 0.453317693324115 5 3 2 -6.98489495102437 LTS-039 NA NA NA NA LTS-039 chr1 26233003 26286241 53239 * STMN1 NA 0 NA 0.603 1 NA NA NA NA NA LTS-039 chr1 26286242 26394160 107919 * c(EXTL1, PAFAH2, SLC30A2, TRIM63) 0.357439961971827 13 0.116819661587138 0.702408608200297 350 0.269588235145486 3 2 1 -6.74140074164721 LTS-039 chr1 26394161 26440730 46570 * PDIK1L NA 0 NA 1.197 1 NA NA NA NA NA LTS-039 chr1 26440731 26497344 56614 * c(PDIK1L, ZNF593, FAM110D) 0.312690839293348 4 0.0612807745817017 1.32879140485336 136 0.673709592949223 7 5 2 -6.73393211692655 LTS-039 chr1 26497345 26756227 258883 * c(CNKSR1, CD52, ZNF683, CATSPER4, ZNF593, AIM1L, CEP85, LIN28A, SH3BGRL3, UBXN11) 0.36457214311371 33 0.0620074378480908 0.729883493965288 764 0.318473581824726 3 2 1 -6.74076175830385 LTS-039 chr1 26756228 26759338 3111 * DHDDS NA 0 NA 1.244 1 NA NA NA NA NA LTS-039 chr1 26759339 26857422 98084 * c(HMGN2, RPS6KA1, DHDDS) 0.340359042107736 3 0.0495614097189873 1.26048433074948 152 0.424493028154234 6 4 2 -6.78412641144477 LTS-039 chr1 26857423 26863310 5888 * RPS6KA1 NA 0 NA 0.671 1 NA NA NA NA NA LTS-039 chr1 26863311 26901548 38238 * c(MIR1976, RPS6KA1) 0.360888765814259 5 0.0701975783058077 0.597834429967669 150 0.199264471207134 3 2 1 -6.76316445501214 LTS-039 chr1 26901549 27022522 120974 * ARID1A NA 0 NA 1.78 1 NA NA NA NA NA LTS-039 chr1 27022523 27320415 297893 * c(NUDC, KDF1, SFN, TRNP1, GPN2, PIGV, GPATCH3, ARID1A, ZDHHC18, NR0B2) 0.358289377748422 4 0.057706152185014 0.913016397507726 626 0.437353816529851 3 2 1 -6.8203175884641 LTS-039 chr1 27320416 27339112 18697 * c(FAM46B, TRNP1) 0.135723301779631 2 0.215667568261897 1.6787571455203 54 0.373895470020361 10 9 1 -6.73516209702035 LTS-039 chr1 27339113 28537249 1198137 * c(WASF2, FAM46B, FAM76A, EYA3, FGR, DNAJC8, WDTC1, STX12, IFI6, AHDC1, SMPDL3B, GPR3, CD164L2, PPP1R8, XKR8, PTAFR, RPA2, ACTG1P20, SLC9A1, SCARNA1, TMEM222, SYTL1, FCN3, MAP3K6, THEMIS2) 0.367831639298177 16 0.114768299194508 0.804657297495266 1885 0.344309406971933 3 2 1 -6.82445702376849 LTS-039 chr1 28537250 28541342 4093 * DNAJC8 NA 0 NA 1.527 1 NA NA NA NA NA LTS-039 chr1 28541343 28586456 45114 * c(DNAJC8, SESN2, ATPIF1) NA 0 NA 1.53029850166322 77 0.418892089980857 8 NA NA -5.76484337454149 LTS-039 chr1 28586457 28595627 9171 * SESN2 NA 0 NA 0.947 1 NA NA NA NA NA LTS-039 chr1 28595628 28825281 229654 * c(MED18, PHACTR4, SESN2) NA 0 NA 0.88227171939733 253 0.310673058879864 4 NA NA -5.76457211105716 LTS-039 chr1 28825282 28825586 305 * PHACTR4 NA 0 NA 1.635 1 NA NA NA NA NA LTS-039 chr1 28825587 28835476 9890 * c(RCC1, PHACTR4, SNHG3) NA 0 NA 2.54736644240262 47 1.43829285788774 13 NA NA -5.76441057709618 LTS-039 chr1 28835477 28843246 7770 * c(RCC1, SNHG3) NA 0 NA 1.196 1 NA NA NA NA NA LTS-039 chr1 28843247 29189597 346351 * c(GMEB1, RCC1, RAB42, RNU11, OPRD1, YTHDF2, TRNAU1AP, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SNHG12) 0.334071199337279 7 0.0718921149395133 1.02332760043318 489 0.490937803562779 6 4 2 -6.8179383118416 LTS-039 chr1 29189598 29446811 257214 * c(EPB41, TMEM200B, OPRD1) 0.277 1 NA 0.946394093535061 150 0.538028119030975 4 4 0 -5.76629741438973 LTS-039 chr1 29446812 31342734 1895923 * c(MATN1-AS1, MIR4420, PTPRU, TMEM200B, MATN1, MECR, SRSF4, LAPTM5, SDC3) 0.291554444856764 22 0.0448124518873476 1.05051792744968 590 0.578911160090042 4 3 1 -6.83359743126432 LTS-039 chr1 31342735 31351608 8874 * SDC3 0.319493575709501 4 0.0512575197735253 0.693842904522759 131 0.222988459264948 7 5 2 -6.80539921814704 LTS-039 chr1 31351609 31404344 52736 * SDC3 NA 0 NA 1.141 1 NA NA NA NA NA LTS-039 chr1 31404345 32193158 788814 * c(COL16A1, LINC01225, FABP3, LINC01226, HCRTR1, SERINC2, ZCCHC17, PEF1, ADGRB2, TINAGL1, SNORD103C, SNORD103A, NKAIN1, SNRNP40, PUM1) 0.282128490064538 9 0.0487299816448879 1.17866366313517 1044 0.510683644413977 8 6 2 -6.91539632119912 LTS-039 chr1 32193159 32193619 461 * ADGRB2 NA 0 NA 0.86 1 NA NA NA NA NA LTS-039 chr1 32193620 32281021 87402 * c(MIR4254, ADGRB2, SPOCD1) 0.34046714864183 2 0.0982878425849301 0.875467452217947 321 0.34714747358868 6 4 2 -6.80124654903686 LTS-039 chr1 32281022 32372098 91077 * c(PTP4A2, SPOCD1) NA 0 NA 3.321 1 NA NA NA NA NA LTS-039 chr1 32372099 32541381 169283 * c(KHDRBS1, TMEM39B, PTP4A2) 0.21 1 NA 1.87363933881732 194 0.882277053180265 9 9 0 -5.76465594338928 LTS-039 chr1 32541382 32542190 809 * TMEM39B NA 0 NA 0.951 1 NA NA NA NA NA LTS-039 chr1 32542191 33429995 887805 * c(FAM229A, TMEM54, RNF19B, DCDC2B, TXLNA, KPNA6, FNDC5, HDAC1, HPCA, MTMR9LP, ZBTB8OS, LCK, BSDC1, TMEM39B, IQCC, TMEM234, KIAA1522, RBBP4, S100PBP, MARCKSL1, ZBTB8A, ZBTB8B, CCDC28B, SYNC, TSSK3, FAM167B, YARS, EIF3I) 0.316175511426718 5 0.0600108323555006 1.15555071484682 1817 0.543420258352292 7 5 2 -6.8200006210313 LTS-039 chr1 33429996 33430162 167 * RNF19B NA 0 NA 2.946 1 NA NA NA NA NA LTS-039 chr1 33430163 33475574 45412 * c(RNF19B, AK2) 0.301 1 NA 2.56234943371191 44 0.453854343735626 13 13 0 -5.76445435765819 LTS-039 chr1 33475575 33475705 131 * AK2 NA 0 NA 1.485 1 NA NA NA NA NA LTS-039 chr1 33475706 33841254 365549 * c(MIR3605, AZIN2, A3GALT2, ZNF362, PHC2, AK2, TRIM62) 0.271277997161794 14 0.0406356769570564 1.23011023812369 497 0.532804144078265 8 6 2 -6.79864489266668 LTS-039 chr1 33841255 33944742 103488 * c(PHC2, ZSCAN20) NA 0 NA 0.617 1 NA NA NA NA NA LTS-039 chr1 33944743 35581476 1636734 * c(TMEM35B, SMIM12, CSMD2, GJB4, HMGB4, GJA4, GJB3, GJB5, CSMD2-AS1, DLGAP3, LOC653160, ZSCAN20, ZMYM1, C1orf94, ZMYM6) 0.302780347484435 28 0.0565825238972424 0.857060632680778 1323 0.396778406593702 4 3 1 -6.74791867701105 LTS-039 chr1 35581477 35643509 62033 * character(0) NA 0 NA 3.267 1 NA NA NA NA NA LTS-039 chr1 35643510 35734797 91288 * c(SFPQ, ZMYM4) NA 0 NA 1.86004722236444 103 0.891470044629718 9 NA NA -5.7645000670182 LTS-039 chr1 35734798 35790842 56045 * ZMYM4 NA 0 NA 1.293 1 NA NA NA NA NA LTS-039 chr1 35790843 37261322 1470480 * c(OSCP1, C1orf216, COL8A2, CSF3R, AGO3, AGO4, NCDN, AGO1, TRAPPC3, TEKT2, GRIK3, TFAP2E, ADPRHL2, EVA1B, MAP7D1, PSMB2, CLSPN, MRPS15, SH3D21, KIAA0319L, STK40, LSM10, ZMYM4, THRAP3) 0.27549585851276 12 0.0918539684235336 1.08236549277361 2230 0.469169459283554 5 4 1 -6.78831653215721 LTS-039 chr1 37261323 37627257 365935 * c(MIR4255, GRIK3) NA 0 NA 0.59400679409402 219 0.207869248926232 2 NA NA -5.8280770966141 LTS-039 chr1 37627258 37940981 313724 * c(LINC01137, ZC3H12A) NA 0 NA 2.717 1 NA NA NA NA NA LTS-039 chr1 37940982 38172820 231839 * c(MIR5581, RSPO1, GNL2, C1orf109, CDCA8, MEAF6, DNALI1, SNIP1, ZC3H12A) 0.288522566947995 11 0.0432697668964454 1.25147677797736 554 0.502101457727269 8 6 2 -6.81572631333547 LTS-039 chr1 38172821 38173951 1131 * CDCA8 NA 0 NA 0.539 1 NA NA NA NA NA LTS-039 chr1 38173952 38227711 53760 * c(EPHA10, CDCA8) 0.309112881357888 14 0.0620054942620516 0.627103692904188 221 0.310000549023545 4 3 1 -6.79509585636493 LTS-039 chr1 38227712 38228442 731 * EPHA10 NA 0 NA 0.989 1 NA NA NA NA NA LTS-039 chr1 38228443 39790450 1562008 * c(MIR3659, GJA9-MYCBP, SF3A3, C1orf122, MANEAL, FHL3, MACF1, MYCBP, EPHA10, LINC01343, INPP5B, MTF1, NDUFS5, UTP11, POU3F1, RHBDL2, RRAGC, AKIRIN1, YRDC) 0.249767013428826 21 0.0510336023755777 1.19826339990998 1328 0.577261725898649 5 4 1 -6.76869628052549 LTS-039 chr1 39790451 39792880 2430 * MACF1 NA 0 NA 0.935 1 NA NA NA NA NA LTS-039 chr1 39792881 39991617 198737 * c(MACF1, BMP8A, KIAA0754, PPIEL) 0.269229299624275 13 0.0946840224249271 0.936792657154912 739 0.373182016990058 5 4 1 -6.77980915020431 LTS-039 chr1 39991618 40026443 34826 * c(BMP8A, PPIEL) NA 0 NA 2.095 1 NA NA NA NA NA LTS-039 chr1 40026444 40214789 188346 * c(PPIE, HEYL, HPCAL4, SNORA55, NT5C1A, PABPC4) 0.201910371241305 8 0.0490386145224935 1.38383233833843 381 0.763245135114354 6 5 1 -6.7598854533384 LTS-039 chr1 40214790 40218564 3775 * PPIE NA 0 NA 0.668 1 NA NA NA NA NA LTS-039 chr1 40218565 40254569 36005 * c(PPIE, OXCT2, BMP8B) 0.184619800182061 6 0.134724904898835 0.918044659955973 155 0.459898960506715 7 6 1 -6.75323323550471 LTS-039 chr1 40254570 40306710 52141 * TRIT1 NA 0 NA 5.137 1 NA NA NA NA NA LTS-039 chr1 40306711 40424463 117753 * c(MYCL, TRIT1, MFSD2A) 0.247681683497583 6 0.0168255757702374 2.32085090762053 197 0.788122241116769 13 10 3 -6.73742568162833 LTS-039 chr1 40424464 40430905 6442 * MFSD2A NA 0 NA 0.908 1 NA NA NA NA NA LTS-039 chr1 40430906 40923104 492199 * c(ZMPSTE24, CAP1, TMCO2, COL9A2, PPT1, RLF, SMAP2, ZFP69B, MFSD2A) 0.314940114825988 14 0.0719470195795046 1.02659391617925 775 0.400332248243771 4 3 1 -6.8041730052143 LTS-039 chr1 40923105 40928049 4945 * ZFP69B NA 0 NA 0.537 1 NA NA NA NA NA LTS-039 chr1 40928050 41107716 179667 * c(ZNF684, ZFP69, EXO5, ZFP69B, RIMS3) 0.25 1 NA 0.709714606857091 346 0.390587222336436 3 3 0 -5.76441344605636 LTS-039 chr1 41107717 41157360 49644 * c(NFYC-AS1, NFYC, RIMS3) NA 0 NA 1.999 1 NA NA NA NA NA LTS-039 chr1 41157361 41235015 77655 * c(NFYC-AS1, MIR30C1, MIR30E, NFYC) NA 0 NA 1.4008663742987 68 0.567278440271786 7 NA NA -5.76448515918296 LTS-039 chr1 41235016 41306111 71096 * c(NFYC, KCNQ4) 0.255 1 NA 0.741951039939989 148 0.28910577685587 3 3 0 -5.76532126001496 LTS-039 chr1 41306112 41326708 20597 * KCNQ4 NA 0 NA 2.903 1 NA NA NA NA NA LTS-039 chr1 41326709 41990612 663904 * c(SLFNL1-AS1, CTPS1, CITED4, EDN2, SLFNL1, SCMH1, HIVEP3) 0.335976561422847 19 0.085414058582348 1.35768479682124 573 0.645417434831022 6 4 2 -6.76847477219658 LTS-039 chr1 41990613 42050992 60380 * HIVEP3 0.247 1 NA 0.623328462739161 126 0.170183919371656 3 3 0 -5.7861108607666 LTS-039 chr1 42619020 43318174 699155 * c(LOC100129924, PPIH, ERMAP, CLDN19, FOXJ3, RIMKLA, GUCA2A, GUCA2B, SVBP, YBX1, ZNF691, P3H1, CCDC30, C1orf50, PPCS, ZMYND12) 0.276445658052476 14 0.086075867379045 0.997306155943259 975 0.457755332522975 4 3 1 -6.79388569366611 LTS-039 chr1 43318175 43391545 73371 * SLC2A1 NA 0 NA 2.605 1 NA NA NA NA NA LTS-039 chr1 43391546 43424540 32995 * SLC2A1 0.34429804496972 3 0.0446430285710994 1.71274204046251 108 0.605674632156635 9 6 3 -6.73798191794522 LTS-039 chr1 43424541 43610776 186236 * c(SLC2A1-AS1, SLC2A1) NA 0 NA 0.91 1 NA NA NA NA NA LTS-039 chr1 43610777 43806163 195387 * c(EBNA1BP2, TMEM125, CFAP57, C1orf210, MPL, FAM183A, TIE1) 0.280875135962537 4 0.0661362230551458 0.927545379610389 479 0.321361685954308 4 3 1 -6.7727395058513 LTS-039 chr1 43806164 43812111 5948 * MPL NA 0 NA 1.584 1 NA NA NA NA NA LTS-039 chr1 43812112 43868952 56841 * c(MED8, SZT2, MPL, ELOVL1, CDC20) 0.308215953434646 3 0.0484183160935336 1.36766163164947 202 0.439320138009747 7 5 2 -6.73535198099266 LTS-039 chr1 43868953 43869218 266 * SZT2 NA 0 NA 0.951 1 NA NA NA NA NA LTS-039 chr1 43869219 44433707 564489 * c(KDM4A-AS1, SZT2, PTPRF, ST3GAL3, HYI, ARTN, IPO13, KDM4A) 0.28852072950872 14 0.0546877248817982 0.92149052353891 1122 0.38834338604126 4 3 1 -6.75180075051354 LTS-039 chr1 44433708 44435594 1887 * character(0) NA 0 NA 1.451 1 NA NA NA NA NA LTS-039 chr1 44435595 44461461 25867 * c(CCDC24, DPH2, ATP6V0B, SLC6A9, B4GALT2) 0.292106354336129 3 0.0341223289552946 1.37650239435095 227 0.44039226620659 11 8 3 -6.75021475918562 LTS-039 chr1 44461462 44596458 134997 * c(KLF17, CCDC24, SLC6A9) 0.294447836327901 2 0.0190918830920368 0.725304440692419 157 0.30675285568358 4 3 1 -6.78544152553634 LTS-039 chr1 44596459 44679133 82675 * c(KLF17, DMAP1) NA 0 NA 2.098 1 NA NA NA NA NA LTS-039 chr1 44679134 45233118 553985 * c(MIR5584, KIF2C, C1orf228, RNF220, DMAP1, ERI3, TMEM53) 0.289 1 NA 1.02722980553165 507 0.43158894194869 5 5 0 -5.76768249958174 LTS-039 chr1 45233119 45279169 46051 * c(KIF2C, PLK3, BTBD19, BEST4, SNORD55, TCTEX1D4, RPS8, SNORD46, SNORD38A, SNORD38B) 0.284903563841922 4 0.0433820239269677 1.47142579550218 250 0.619453352859986 11 8 3 -6.75386556912786 LTS-039 chr1 45279170 46501728 1222559 * c(AKR1A1, TESK2, TOE1, CCDC163, BTBD19, CCDC17, MAST2, MMACHC, IPP, LINC01144, MUTYH, NASP, PRDX1, TMEM69, ZSWIM5, GPBP1L1, RPS15AP10, UROD, HECTD3, HPDL, PTCH2, EIF2B3) 0.269938091678523 16 0.0963842786281387 1.02700993254267 1584 0.469676760950315 5 4 1 -6.77131037298504 LTS-039 chr1 46501729 46810530 308802 * c(TSPAN1, LRRC41, MAST2, NSUN4, LURAP1, POMGNT1, UQCRH, RAD54L, PIK3R3) 0.201809760276954 8 0.084921707640458 1.55289089285277 599 0.753908772728281 6 5 1 -6.75654503569397 LTS-039 chr1 46810531 46810615 85 * NSUN4 NA 0 NA 1.201 1 NA NA NA NA NA LTS-039 chr1 46810616 47080738 270123 * c(MKNK1-AS1, DMBX1, KNCN, MOB3C, FAAH, NSUN4, FAAHP1, MKNK1) 0.282241041142054 8 0.0503031879137467 1.01776657796499 427 0.355996011272908 4 3 1 -6.8104406707175 LTS-039 chr1 47080739 47080849 111 * c(MOB3C, MKNK1) NA 0 NA 1.334 1 NA NA NA NA NA LTS-039 chr1 47080850 47184728 103879 * c(EFCAB14-AS1, MOB3C, TEX38, ATPAF1, MKNK1, EFCAB14) 0.23644994896694 13 0.0847118040392822 1.40831995481041 324 0.551388497719688 9 7 2 -6.75727899921898 LTS-039 chr1 47184729 47264667 79939 * EFCAB14 NA 0 NA 0.865 1 NA NA NA NA NA LTS-039 chr1 47264668 47691575 426908 * c(LINC00853, PDZK1IP1, CYP4A11, CYP4B1, CYP4Z2P, CYP4Z1, CYP4X1, CYP4A22, TAL1) 0.17280787988827 3 0.147805051785564 0.864937082665068 529 0.461718459243358 3 3 0 -6.85580464601664 LTS-039 chr1 47691576 48462389 770814 * c(FOXE3, FOXD2, TRABD2B, CMPK1, STIL, TAL1, FOXD2-AS1) 0.231713139516786 8 0.113878381241945 1.16654805783384 407 0.635921671515008 5 4 1 -6.75277492748246 LTS-039 chr1 48462390 48688293 225904 * c(TRABD2B, SKINT1L) NA 0 NA 0.712 1 NA NA NA NA NA LTS-039 chr1 48688294 50666818 1978525 * c(ELAVL4, SLC5A9, SPATA6, BEND5, AGBL4) 0.274358207967829 13 0.0987699346967487 0.818147354511122 587 0.392388151395447 4 3 1 -6.82259035559934 LTS-039 chr1 50666819 52490238 1823420 * c(MIR761, CDKN2C, FAF1, OSBPL9, ELAVL4, EPS15, TTC39A, RNF11, C1orf185, NRDC, TXNDC12, RAB3B, DMRTA2) 0.218134269372868 11 0.146878428393256 1.05899835938802 1430 0.509749881286513 5 4 1 -6.75768622316619 LTS-039 chr1 52490239 52552059 61821 * c(KTI12, TXNDC12, BTF3L4) NA 0 NA 1.74324870563114 128 0.747100124087076 9 NA NA -5.76446497903144 LTS-039 chr1 52552060 53413806 861747 * c(CC2D1B, ZCCHC11, GPX7, FAM159A, ZYG11A, ORC1, ECHDC2, SCP2, COA7, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.192003883016022 5 0.154845083874174 0.999718603772776 1288 0.533751704665292 5 4 1 -6.81820674655191 LTS-039 chr1 53413807 53416396 2590 * SCP2 NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr1 53416397 53608401 192005 * c(PODN, SCP2, SLC1A7) 0.221435659373249 6 0.184477640921603 0.723563424078107 362 0.458973105534235 5 4 1 -6.82846150780379 LTS-039 chr1 53608402 53662114 53713 * CPT2 NA 0 NA 1.469 1 NA NA NA NA NA LTS-039 chr1 53662115 55073741 1411627 * c(LOC100507564, MIR4781, LRRC42, TCEANC2, CPT2, GLIS1, SLC25A3P1, DIO1, CDCP2, SSBP3, ACOT11, LDLRAD1, MAGOH, MRPL37, HSPB11, YIPF1, C1orf123, NDC1, CYB5RL, DMRTB1, LRP8, TMEM59) 0.281685502491215 31 0.0955220179538649 1.12409632425267 1340 0.519221209389583 5 4 1 -6.81559114353425 LTS-039 chr1 55073742 55074658 917 * ACOT11 NA 0 NA 0.613 1 NA NA NA NA NA LTS-039 chr1 55074659 55518089 443431 * c(MROH7-TTC4, LEXM, DHCR24, TMEM61, PCSK9, PARS2, ACOT11, FAM151A, MROH7, TTC22, TTC4, BSND) 0.290364760737953 14 0.0566700494573148 0.923635173631328 854 0.427918782052721 4 3 1 -6.74448443851403 LTS-039 chr1 55518090 55518252 163 * PCSK9 NA 0 NA 1.307 1 NA NA NA NA NA LTS-039 chr1 55518253 55643786 125534 * c(USP24, PCSK9) 0.234786043335521 9 0.102959943667428 1.20962144083567 472 0.491789585783228 5 4 1 -6.74680070694574 LTS-039 chr1 55643787 55680389 36603 * USP24 NA 0 NA 4.318 1 NA NA NA NA NA LTS-039 chr1 55680390 57157167 1476778 * c(LOC100507634, MIR4422, USP24, PRKAA2, PLPP3) 0.351 1 NA 2.05865315415174 111 1.48465163593965 10 10 0 -5.76510992642216 LTS-039 chr1 57157168 59120870 1963703 * c(MYSM1, OMA1, DAB1, C1orf168, TACSTD2, PRKAA2, C8A, C8B) 0.366278118986662 12 0.129843583055175 1.01405934463557 682 0.527871898286913 5 3 2 -6.80477591623699 LTS-039 chr1 59120871 59165801 44931 * MYSM1 0.209748153020148 17 0.0404921924209942 1.4727256812658 230 0.889148164449778 6 5 1 -6.73566048010701 LTS-039 chr1 59165802 59246437 80636 * character(0) NA 0 NA 2.941 1 NA NA NA NA NA LTS-039 chr1 59246438 59364961 118524 * c(LINC01135, JUN) 0.202 1 NA 3.32509055330515 90 1.97630284264399 17 17 0 -5.76442302256758 LTS-039 chr1 59364962 59787160 422199 * c(LINC01135, FGGY, HSD52) NA 0 NA 1.412 1 NA NA NA NA NA LTS-039 chr1 59787161 62232156 2444996 * c(MIR4711, PATJ, C1orf87, CYP2J2, MGC34796, NFIA, HOOK1, FGGY, TM2D1) 0.300941095282655 7 0.0633264407276936 1.30555500559367 711 0.765235262326217 7 5 2 -6.76972509637925 LTS-039 chr1 62232157 62234961 2805 * PATJ NA 0 NA 0.557 1 NA NA NA NA NA LTS-039 chr1 62234962 65901701 3666740 * c(MIR3671, MIR4794, PATJ, UBE2U, KANK4, LINC00466, AK4, ITGB3BP, FOXD3, ANGPTL3, ALG6, JAK1, LEPR, MIR101-1, ROR1, PGM1, L1TD1, LEPROT, RAVER2, CACHD1, USP1, DLEU2L, EFCAB7, ATG4C, DOCK7, DNAJC6) 0.258473389902984 59 0.103552853433019 1.05432185435909 2440 0.49948076369473 5 4 1 -6.74215575098392 LTS-039 chr1 65901702 66031186 129485 * LEPR NA 0 NA 0.699 1 NA NA NA NA NA LTS-039 chr1 66031187 67371086 1339900 * c(INSL5, MIR3117, TCTEX1D1, LEPR, PDE4B, WDR78, SGIP1) 0.270208761582328 9 0.175301010962414 0.797260845770854 844 0.548332275857168 4 3 1 -6.78093790525483 LTS-039 chr1 67371087 67384786 13700 * WDR78 NA 0 NA 1.879 1 NA NA NA NA NA LTS-039 chr1 67384787 67878950 494164 * c(IL23R, SLC35D1, SERBP1, IL12RB2, C1orf141, MIER1, WDR78) 0.278937747460971 12 0.069019705135343 1.03321492030432 754 0.500826096981913 4 3 1 -6.80192795477378 LTS-039 chr1 67878951 68167221 288271 * c(GADD45A, SERBP1, GNG12) NA 0 NA 2.09346893906222 84 1.01514173286708 11 NA NA -5.76455092862515 LTS-039 chr1 68167222 68894730 727509 * c(GNG12-AS1, MIR1262, GNG12, RPE65, WLS, DIRAS3) 0.293265446370963 5 0.0723069844482537 1.18477666776901 249 0.545759884534912 7 5 2 -6.82138245113231 LTS-039 chr1 68894731 70588681 1693951 * c(PIN1P1, DEPDC1, LRRC7, RPE65) 0.283660517100573 8 0.123613380574851 0.771980058506868 478 0.431377767446427 4 3 1 -6.8520704372305 LTS-039 chr1 70588682 70887422 298741 * c(HHLA3, CTH, LRRC40, LRRC7, ANKRD13C, SRSF11) 0.295621013326848 2 0.0523259018078045 1.13260974591321 381 0.416287939944486 4 3 1 -6.79242346554258 LTS-039 chr1 70887423 70889931 2509 * CTH NA 0 NA 0.507 1 NA NA NA NA NA LTS-039 chr1 70889932 71531499 641568 * c(ZRANB2-AS1, CTH, PTGER3, ZRANB2) 0.343166295772966 5 0.056403014103858 0.710133475857929 318 0.197196169401018 3 2 1 -6.87704822885937 LTS-039 chr1 71531500 71532445 946 * c(ZRANB2-AS1, ZRANB2) NA 0 NA 1.639 1 NA NA NA NA NA LTS-039 chr1 71532446 71546984 14539 * c(ZRANB2-AS1, MIR186, ZRANB2) 0.293 1 NA 1.75258230344256 50 0.657297502300604 9 9 0 -5.76442117863889 LTS-039 chr1 71546985 71868600 321616 * ZRANB2-AS2 NA 0 NA 0.783 1 NA NA NA NA NA LTS-039 chr1 71868601 75699728 3831128 * c(FPGT-TNNI3K, NEGR1-IT1, TYW3, ERICH3, LRRIQ3, CRYZ, SLC44A5, NEGR1, LHX8, TNNI3K, FPGT) 0.308753857126073 26 0.081089428315998 0.725199217515321 1199 0.429123287660477 3 2 1 -7.07329834583482 LTS-039 chr1 75699729 76229207 529479 * c(SLC44A5, ACADM) 0.229 1 NA 1.08575635049929 149 0.569858014845152 5 5 0 -5.76456486469966 LTS-039 chr1 76229208 76261031 31824 * c(SNORD45B, SNORD45A, ACADM, RABGGTB, SNORD45C) 0 1 NA 2.41398964208488 82 0.85751750732499 12 12 0 -5.76443853762258 LTS-039 chr1 76261032 76262571 1540 * MSH4 NA 0 NA 1.384 1 NA NA NA NA NA LTS-039 chr1 76262572 76378954 116383 * MSH4 0 2 0 1.2412055314282 95 0.558015912467225 0 0 0 -Inf LTS-039 chr1 76378955 76384544 5590 * character(0) NA 0 NA 0.281 1 NA NA NA NA NA LTS-039 chr1 76384545 77556151 1171607 * c(PIGK, ASB17, ST6GALNAC3, ST6GALNAC5) 0.234893927232636 4 0.152620171231285 0.655747961670618 348 0.276278977537314 3 3 0 -7.11816101097225 LTS-039 chr1 77556152 84880640 7324489 * c(PIGK, MIR548AP, IFI44, IFI44L, DNAJB4, SAMD13, MGC27382, USP33, ADGRL2, ZZZ3, AK5, MIGA1, UOX, GIPC2, PRKACB, PTGFR, DNASE2B, ADGRL4, TTLL7, FUBP1, NEXN) 0.280454230103814 25 0.114556870883709 0.853441730782119 2053 0.442094566896864 4 3 1 -6.78935354360875 LTS-039 chr1 84880641 84880703 63 * DNASE2B 0 1 NA 2.61 1 NA NA NA NA NA LTS-039 chr1 84880704 85655979 775276 * c(MIR4423, SSX2IP, WDR63, CTBS, LPAR3, MCOLN2, GNG5, LINC01555, MCOLN3, RPF1, SYDE2) 0.302335779825556 32 0.0767575190705834 1.02149644167868 903 0.498771289611732 4 3 1 -6.7696733366114 LTS-039 chr1 85655980 85655984 5 * SYDE2 NA 0 NA 1.592 1 NA NA NA NA NA LTS-039 chr1 85655985 86174187 518203 * c(C1orf52, DDAH1, CYR61, ZNHIT6, LOC646626, SYDE2, BCL10) 0.285078593172218 15 0.0553713008008748 1.41149925707473 390 0.715000488376396 8 6 2 -6.75884247906396 LTS-039 chr1 86174188 86194898 20711 * character(0) NA 0 NA 0.658 1 NA NA NA NA NA LTS-039 chr1 86194899 87104709 909811 * c(CLCA1, CLCA4, COL24A1, ODF2L, CLCA3P, CLCA2) 0.269794485957301 12 0.0964158842062485 0.834625830513963 791 0.529766777522702 4 3 1 -6.79088598510542 LTS-039 chr1 87104710 87108211 3502 * CLCA3P NA 0 NA 1.07 1 NA NA NA NA NA LTS-039 chr1 87108212 89528843 2420632 * c(LINC01364, GBP1, GBP3, GTF2B, LINC01140, RBMXL1, SH3GLB1, PKN2, KYAT3, LMO4, SELENOF, CLCA3P, HS2ST1) 0.277365061442276 33 0.0713600028026905 1.04590079860813 1001 2.7574064054932 8 6 2 -6.76885330264288 LTS-039 chr1 89528844 90059079 530236 * c(GBP4, GBP5, GBP6, LRRC8B, GBP1, GBP2, GBP7, GBP1P1, LOC729930) 0.301942010767612 10 0.0508056208613881 0.738200740993573 530 0.261520077971781 4 3 1 -6.89910623096964 LTS-039 chr1 90059080 90059178 99 * LRRC8B NA 0 NA 0.856 1 NA NA NA NA NA LTS-039 chr1 90059179 93297684 3238506 * c(GLMN, HFM1, KIAA1107, LRRC8B, EPHX4, GFI1, ZNF326, BTBD8, BARHL2, C1orf146, FLJ27354, GEMIN8P4, LRRC8D, RPL5, BRDT, TGFBR3, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.297122103184047 18 0.0438060192240911 0.936806998113598 1824 0.429625036903901 4 3 1 -6.75859396709 LTS-039 chr1 93297685 94048067 750383 * c(CCDC18-AS1, DR1, MTF2, SNORA66, CCDC18, FAM69A, TMED5, FNBP1L, SNORD21, RPL5, BCAR3) 0.238 1 NA 1.14931267105174 767 0.489695971825184 5 5 0 -5.77345583390565 LTS-039 chr1 94048068 94638870 590803 * c(MIR760, LOC100129046, ABCA4, GCLM, DNTTIP2, BCAR3, ARHGAP29) 0.190979858617445 14 0.047575734880825 1.81493273115613 594 0.916830870722415 12 10 2 -6.75972473152648 LTS-039 chr1 94638871 97272518 2633648 * c(TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, RWDD3, FLJ31662, PTBP2, ABCD3, LOC729970, ARHGAP29) 0.240594568228889 13 0.121275856349619 1.11341392885591 814 0.610536737364271 5 4 1 -6.74104624121015 LTS-039 chr1 97272519 97278310 5792 * PTBP2 NA 0 NA 0.78 1 NA NA NA NA NA LTS-039 chr1 97278311 100389481 3111171 * c(LOC100129620, MIR2682, DPYD-AS1, PLPPR5, AGL, DPYD, FRRS1, MIR137HG, MIR137, SNX7, PALMD, PTBP2, LOC729987, PLPPR4) 0.324234243170671 11 0.0552304263970504 0.737829163728376 866 0.364561353461386 3 2 1 -7.15600518881652 LTS-039 chr1 100389482 100921074 531593 * c(LRRC39, DBT, SASS6, AGL, SLC35A3, TRMT13, MFSD14A, MIR553, CDC14A, RTCA) 0.304698922699562 3 0.0291032644217105 1.06065932922848 690 0.564062318508092 4 3 1 -6.79893421130634 LTS-039 chr1 100921075 100928150 7076 * CDC14A NA 0 NA 0.616 1 NA NA NA NA NA LTS-039 chr1 100928151 109178862 8250712 * c(LINC01349, LOC100129138, VAV3-AS1, VAV3, OLFM3, COL11A1, NBPF4, SLC30A7, S1PR1, EXTL2, NTNG1, AMY2A, AMY2B, FAM102B, SLC25A24, DPH5, GPR88, PRMT6, RNPC3, ACTG1P4, NBPF6, VCAM1, CDC14A, DNAJA1P5) 0.282639530289177 24 0.0987290153818059 0.83598611767549 1738 0.442654306649406 4 3 1 -6.85013655420059 LTS-039 chr1 109178863 109255353 76491 * c(HENMT1, FAM102B, PRPF38B) NA 0 NA 1.41441486475202 218 1.02424875021905 7 NA NA -5.76441768640107 LTS-039 chr1 109255354 109607131 351778 * c(FNDC7, WDR47, CLCC1, AKNAD1, GPSM2, SPATA42, STXBP3, TAF13) 0.315531601561433 23 0.0640279089345392 0.975605968682325 590 0.536505779827615 4 3 1 -6.78584943151776 LTS-039 chr1 109607132 109656498 49367 * c(C1orf194, TMEM167B, SCARNA2, TAF13) NA 0 NA 1.85211229700712 136 1.62473319753762 9 NA NA -5.7644215157724 LTS-039 chr1 109656499 109803847 147349 * c(CELSR2, KIAA1324, SARS) 0.287821095849034 8 0.0471494584122811 1.02260640973875 299 0.336200637551174 4 3 1 -6.77315881107659 LTS-039 chr1 109803848 109804085 238 * CELSR2 NA 0 NA 0.602 1 NA NA NA NA NA LTS-039 chr1 109804086 109816739 12654 * CELSR2 0.259394185816255 6 0.0356183473320516 0.699294301547874 173 0.243558007652825 5 4 1 -6.82165431088635 LTS-039 chr1 109816740 109816834 95 * CELSR2 NA 0 NA 1.751 1 NA NA NA NA NA LTS-039 chr1 109816835 110087889 271055 * c(ATXN7L2, CELSR2, SYPL2, CYB561D1, MYBPHL, PSMA5, AMIGO1, SORT1, GPR61, PSRC1) 0.28443551178505 30 0.0703232601600653 1.07519305088559 862 0.512241222806779 4 3 1 -6.77547793164715 LTS-039 chr1 110087890 110091506 3617 * c(GNAI3, GPR61) 0.268997994058124 2 0.0240416305603426 2.24095728559841 55 0.695155453389459 12 9 3 -6.73368081915133 LTS-039 chr1 110091507 110116387 24881 * GNAI3 NA 0 NA 1.323 1 NA NA NA NA NA LTS-039 chr1 110116388 110602701 486314 * c(AHCYL1, CSF1, AMPD2, GNAI3, GNAT2, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, MIR197, EPS8L3, STRIP1) 0.2443427251989 16 0.111952352215872 1.0178506552143 984 0.550564197344593 5 4 1 -6.73613261236816 LTS-039 chr1 110602702 110602800 99 * character(0) NA 0 NA 0.876 1 NA NA NA NA NA LTS-039 chr1 110602801 110776706 173906 * c(UBL4B, ALX3, KCNC4, SLC6A17) 0.2606849718537 9 0.0795644392929404 0.773569345922269 308 0.316701010440384 5 4 1 -6.85813322320191 LTS-039 chr1 110776707 110835630 58924 * LOC440600 NA 0 NA 2.243 1 NA NA NA NA NA LTS-039 chr1 110835631 110950633 115003 * c(LAMTOR5-AS1, LAMTOR5, LOC440600, RBM15, SLC16A4) 0.264 1 NA 1.58389315249676 210 0.774906564590841 8 8 0 -5.76444977974704 LTS-039 chr1 110950634 110993782 43149 * LAMTOR5-AS1 NA 0 NA 0.518 1 NA NA NA NA NA LTS-039 chr1 110993783 111674289 680507 * c(DRAM2, KCNA2, KCNA3, KCNA10, LRIF1, CYMP, PROK1, CD53) 0.276866898171682 11 0.0329371301945775 0.719735900797397 420 0.371771938174592 4 3 1 -7.09363620961549 LTS-039 chr1 111674290 111690253 15964 * c(CEPT1, DRAM2) NA 0 NA 3.135 1 NA NA NA NA NA LTS-039 chr1 111690254 111772602 82349 * c(CEPT1, CHI3L2, DENND2D) 0.30763603670083 2 0.00636396103067893 1.50454802081512 147 0.958940099940297 20 14 6 -6.80041080060422 LTS-039 chr1 111772603 111773371 769 * CHI3L2 NA 0 NA 0.448 1 NA NA NA NA NA LTS-039 chr1 111773372 113068577 1295206 * c(LINC01160, MIR4256, FAM212B-AS1, CHI3L2, DDX20, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, KCND3, PGCP1, OVGP1, ATP5F1, ST7L, CTTNBP2NL, FAM212B, RAP1A, LOC643355, WNT2B, WDR77) 0.297777757123023 52 0.0668549763160545 0.918421310008631 1338 0.403697196088495 4 3 1 -6.73718415616079 LTS-039 chr1 113068578 113153623 85046 * ST7L NA 0 NA 0.865770119909218 70 0.365398862868383 4 NA NA -5.76474343914545 LTS-039 chr1 113153624 113159385 5762 * ST7L NA 0 NA 2.188 1 NA NA NA NA NA LTS-039 chr1 113159386 113197203 37818 * c(ST7L, CAPZA1) 0.383 1 NA 1.88825753274464 53 0.855638364123332 10 10 0 -5.76447198251473 LTS-039 chr1 113197204 113456546 259343 * c(FAM19A3, PPM1J, RHOC, MOV10, SLC16A1, CAPZA1) 0.422507836902105 14 0.0479709160972437 1.36870847401527 383 0.645670398597885 7 4 3 -6.73525621667861 LTS-039 chr1 113456547 114191994 735448 * c(AKR7A2P1, MAGI3, LOC643441, SLC16A1, LRIG2) 0.197 1 NA 1.36432101851354 245 0.806675380303018 7 7 0 -5.76605101193453 LTS-039 chr1 114191995 115113323 921329 * c(AP4B1-AS1, BCAS2, AP4B1, PHTF1, SYT6, DENND2C, HIPK1, MAGI3, PTPN22, BCL2L15, TRIM33, RSBN1, OLFML3, DCLRE1B) 0.205297858151321 23 0.0524073434193031 1.49227861386648 1338 0.791143071082694 6 5 1 -6.76955502533776 LTS-039 chr1 115113324 115113329 6 * c(BCAS2, DENND2C) NA 0 NA 2.601 1 NA NA NA NA NA LTS-039 chr1 115113330 115127636 14307 * c(BCAS2, DENND2C) NA 0 NA 2.91508117124807 52 1.2663913779602 15 NA NA -5.76441106708373 LTS-039 chr1 115127637 115258840 131204 * c(DENND2C, AMPD1, NRAS) 0.200684951632066 3 0.0143643076176102 1.16138483230541 244 0.366672026142502 11 9 2 -7.0612059072265 LTS-039 chr1 115258841 115259569 729 * c(NRAS, CSDE1) NA 0 NA 3.559 1 NA NA NA NA NA LTS-039 chr1 115259570 115262439 2870 * CSDE1 NA 0 NA 3.02776503312139 42 1.38347804002238 16 NA NA -5.76441021954474 LTS-039 chr1 115262440 116225134 962695 * c(TSPAN2, NGF, SYCP1, TSHB, CSDE1, SIKE1, VANGL1) 0.166479958788943 9 0.0757668206480324 1.55829423315548 520 0.811650650091426 8 7 1 -6.73448959599254 LTS-039 chr1 116225135 116226586 1452 * VANGL1 NA 0 NA 3.532 1 NA NA NA NA NA LTS-039 chr1 116226587 117118307 891721 * c(MAB21L3, IGSF3, ATP1A1, NHLH2, SLC22A15, VANGL1, CASQ2, ATP1A1-AS1, CD58) 0.177101524121274 25 0.0559376736496374 2.11264720666533 897 1.05204471276518 13 11 2 -6.74775292675709 LTS-039 chr1 117118308 117654273 535966 * c(MIR942, MIR320B1, IGSF3, PTGFRN, TRIM45, TTF2, CD2, CD101) 0.177855810921203 33 0.061300041400945 1.4061015886317 648 0.771499947233935 7 6 1 -6.74194208981079 LTS-039 chr1 117654274 117654377 104 * TRIM45 NA 0 NA 3.637 1 NA NA NA NA NA LTS-039 chr1 117654378 117911145 256768 * c(MAN1A2, VTCN1, TRIM45) 0.190202021232165 3 0.0549454274712646 2.23283076397563 162 0.694893436881156 12 10 2 -6.73379222108784 LTS-039 chr1 117911146 117944791 33646 * MAN1A2 NA 0 NA 1.428 1 NA NA NA NA NA LTS-039 chr1 117944792 118165650 220859 * c(MAN1A2, FAM46C) 0.215694343367222 9 0.0252636101933196 1.34356773452928 233 0.694850165381657 6 5 1 -6.74768546862984 LTS-039 chr1 118165651 118170988 5338 * FAM46C NA 0 NA 2.28463110852456 109 0.636699685061055 12 NA NA -5.76441395879838 LTS-039 chr1 118170989 118319310 148322 * FAM46C NA 0 NA 0.787 1 NA NA NA NA NA LTS-039 chr1 118319311 118320891 1581 * character(0) NA 0 NA 0.539249025333504 44 0.235013205287744 2 NA NA -5.76441443003687 LTS-039 chr1 118320892 120057687 1736796 * c(WARS2, WDR3, SPAG17, HSD3B1, HSD3B2, HAO2, GDAP2, TBX15) 0.180269714574161 16 0.0989739864812972 1.20533591125089 850 0.678609224625199 6 5 1 -6.79714983802698 LTS-039 chr1 120057688 120529742 472055 * c(ADAM30, HSD3BP4, PHGDH, HMGCS2, NBPF7, NOTCH2, LINC00622, REG4, ZNF697) 0.110743277178192 2 0.15556349186104 1.4783481425313 731 0.679933814838171 9 8 1 -6.79010089269056 LTS-039 chr1 120529743 120534070 4328 * NOTCH2 NA 0 NA 0.178 1 NA NA NA NA NA LTS-039 chr1 120534071 120572670 38600 * NOTCH2 0.304848310194723 4 0.121666210044805 0.731575031235413 204 1.05965298233119 4 3 1 -6.73598977875788 LTS-039 chr1 120572671 120611390 38720 * NOTCH2 NA 0 NA 3.123 1 NA NA NA NA NA LTS-039 chr1 120611391 120925961 314571 * c(HIST2H2BA, NOTCH2, FAM72B) 0.277609460828077 12 0.123588852836551 1.90448126787694 41 0.659098783262085 8 6 2 -6.74500674956622 LTS-039 chr1 120925962 120925976 15 * character(0) NA 0 NA 0.91 1 NA NA NA NA NA LTS-039 chr1 120925977 121306567 380591 * c(SRGAP2D, FCGR1B, EMBP1) 0.239 1 NA 0.746196818943278 61 0.457349713737461 3 3 0 -5.76692039566292 LTS-039 chr1 121306568 121313547 6980 * EMBP1 NA 0 NA 0.691670815405767 39 0.356401960747737 3 NA NA -5.76443582782744 LTS-039 chr1 143912360 144013853 101494 * FAM72D 0.237 1 NA 1.09147937597271 9 0.490324920616705 5 5 0 -5.76449069008794 LTS-039 chr1 144013854 144911969 898116 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.402123245028889 21 0.10094633180439 0.950279098822412 308 0.384874828652481 5 3 2 -6.78700460756295 LTS-039 chr1 144911970 144912215 246 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.793 1 NA NA NA NA NA LTS-039 chr1 144912216 144946776 34561 * c(NBPF20, LOC653513, PDE4DIP) 0.451125217107529 21 0.0745772210850063 1.60652045331452 132 0.663666233361111 8 4 4 -6.77772580399504 LTS-039 chr1 144946777 144951739 4963 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 0.246 1 NA NA NA NA NA LTS-039 chr1 144951740 144995058 43319 * c(NBPF20, LOC653513, PDE4DIP) 0.383654295925761 4 0.035984950558069 0.710567889856395 48 0.297436029238829 3 2 1 -6.80481728417049 LTS-039 chr1 144995059 145013818 18760 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.969 1 NA NA NA NA NA LTS-039 chr1 145013819 145136562 122744 * c(NBPF20, LOC653513, SEC22B, PDE4DIP) 0.35373913898426 27 0.122228185557707 1.37215714827386 142 0.588305742822776 6 4 2 -6.73484839160732 LTS-039 chr1 145136563 145136924 362 * NBPF20 NA 0 NA 0.122 1 NA NA NA NA NA LTS-039 chr1 145136925 145139110 2186 * NBPF20 NA 0 NA 0.50042636487523 70 0.334479584338932 2 NA NA -5.76445078425151 LTS-039 chr1 145139111 145281728 142618 * c(NBPF10, NBPF20, NOTCH2NL) 0.249426021624428 4 0.0186368809979925 1.25901966501045 61 0.793992565449495 5 4 1 -6.74243690211385 LTS-039 chr1 145281729 145281920 192 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 0.764 1 NA NA NA NA NA LTS-039 chr1 145281921 145290523 8603 * c(NBPF10, NBPF20, NOTCH2NL) 0.298665333119651 14 0.0841708101109005 0.67740891020492 192 1.03674362907204 4 3 1 -6.73349586669205 LTS-039 chr1 145290524 145290553 30 * c(NBPF10, NBPF20, NOTCH2NL) NA 0 NA 1.431 1 NA NA NA NA NA LTS-039 chr1 145290554 145542387 251834 * c(NBPF10, NBPF20, TXNIP, LIX1L, HFE2, ANKRD34A, NOTCH2NL, POLR3GL, ITGA10, PEX11B, RBM8A) 0.311 1 NA 1.6171523753164 649 0.676017511605477 8 8 0 -5.76441174434807 LTS-039 chr1 145542388 145542503 116 * c(NBPF10, NBPF20, ITGA10) NA 0 NA 3.118 1 NA NA NA NA NA LTS-039 chr1 145542504 145563099 20596 * c(NBPF10, NBPF20, ANKRD35, ITGA10) 0.280948730876877 3 0.230413396601268 2.47472623291405 126 1.0182456866654 15 11 4 -6.73330275720134 LTS-039 chr1 145563100 145566581 3482 * c(NBPF10, NBPF20, ANKRD35) NA 0 NA 1.315 1 NA NA NA NA NA LTS-039 chr1 145566582 145699100 132519 * c(NBPF10, NBPF20, PIAS3, POLR3C, CD160, ANKRD35, NUDT17, RNF115) 0.430158744883234 2 0.0318198051533946 1.42317754053524 393 0.602180426402465 8 4 4 -6.73665518091484 LTS-039 chr1 145699101 145704053 4953 * c(NBPF10, NBPF20, CD160) NA 0 NA 0.771 1 NA NA NA NA NA LTS-039 chr1 145704054 146509897 805844 * c(NBPF10, NBPF20, CD160, NBPF12, PDZK1, GPR89A, NA, NA, NA, LOC728989) 0.286638929925409 3 0.112961645408224 0.794725384980744 148 0.382912889665376 4 3 1 -6.78204662064856 LTS-039 chr1 146509898 147122150 612253 * c(LINC00624, PDIA3P1, FMO5, ACP6, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.390272779163393 21 0.0639253284625712 1.16543112161672 560 0.581578657144566 5 3 2 -6.78171019458004 LTS-039 chr1 147122151 147124287 2137 * c(ACP6, NA, NA, NA) NA 0 NA 1.668 1 NA NA NA NA NA LTS-039 chr1 147124288 147230775 106488 * c(GJA5, ACP6, NA, NA, NA) 0.40362575534288 2 0.0254558441227157 2.21428641699494 94 0.718874150030938 10 6 4 -6.73814741160536 LTS-039 chr1 147230776 147806796 576021 * c(MIR5087, GJA5, GJA8, GPR89B, NA, NA, NA) 0.401 1 NA 1.00574111875541 84 0.451897466240145 5 5 0 -5.77132903846763 LTS-039 chr1 147806797 148193315 386519 * c(NBPF14, LINC01138) NA 0 NA 0.509 1 NA NA NA NA NA LTS-039 chr1 148193316 148195920 2605 * NBPF14 NA 0 NA 0.43818631859608 66 0.241335948130692 2 NA NA -5.76539592380547 LTS-039 chr1 148195921 149400161 1204241 * c(FCGR1CP, NBPF14, NBPF15, LOC388692, PPIAL4D, LOC645166, NA, PPIAL4F, PPIAL4E) NA 0 NA 0.162081739024357 39 0.170163000366288 0 NA NA -5.8186256098085 LTS-039 chr1 149400162 149676266 276105 * LINC00869 NA 0 NA 0.84 1 NA NA NA NA NA LTS-039 chr1 149676267 149783971 107705 * c(FCGR1A, HIST2H2BF) 0.383486665587745 2 0.0777817459305202 1.52430689044574 39 1.12484343849871 8 5 3 -6.73334680404247 LTS-039 chr1 149783972 149784745 774 * character(0) NA 0 NA 2.644 1 NA NA NA NA NA LTS-039 chr1 149784746 149871841 87096 * c(HIST2H2AB, HIST2H2BC, BOLA1, HIST2H3D, HIST2H2AC, HIST2H2BE) 0.360906877242864 2 0.0254558441227157 3.67837866844764 76 1.28738077703829 17 11 6 -6.73565008126053 LTS-039 chr1 149871842 150463221 591380 * c(SF3B4, MTMR11, VPS45, CIART, RPRD2, CA14, BOLA1, APH1A, PLEKHO1, MRPS21, OTUD7B, C1orf54, TARS2, ANP32E, PRPF3, SV2A) 0.382105420798706 33 0.0780339742443228 1.59884432409395 1312 0.869238212204378 8 5 3 -6.7337443888085 LTS-039 chr1 150463222 150463919 698 * TARS2 NA 0 NA 0.956 1 NA NA NA NA NA LTS-039 chr1 150463920 150533278 69359 * c(MIR4257, FALEC, ECM1, ADAMTSL4, TARS2) 0.406510819987549 5 0.179342409931394 1.14470092890006 301 0.404143898640591 5 3 2 -6.73412652951065 LTS-039 chr1 150533279 150596221 62943 * c(ENSA, MCL1, ADAMTSL4) 0.374 1 NA 2.97519542276991 142 1.11744688471347 16 16 0 -5.76443256055554 LTS-039 chr1 150596222 150596340 119 * ENSA NA 0 NA 1.493 1 NA NA NA NA NA LTS-039 chr1 150596341 150703560 107220 * c(CTSS, ENSA, GOLPH3L, HORMAD1) 0.423015486006926 5 0.0458879069036713 1.48950182608449 276 0.597648494978589 7 4 3 -6.73562078774024 LTS-039 chr1 150703561 150703917 357 * CTSS NA 0 NA 0.958 1 NA NA NA NA NA LTS-039 chr1 150703918 150937120 233203 * c(CTSK, CTSS, ARNT, SETDB1) 0.381 1 NA 1.11009768153828 447 0.481971432028414 5 5 0 -5.76513731118826 LTS-039 chr1 150937121 151171692 234572 * c(TNFAIP8L2-SCNM1, SEMA6C, MLLT11, GABPB2, BNIPL, TMOD4, CERS2, LYSMD1, C1orf56, FAM63A, CDC42SE1, PRUNE1, VPS72, SCNM1, TNFAIP8L2, PIP5K1A, ANXA9, SETDB1) 0.370859566246448 15 0.068884444301066 1.59912618977972 1027 0.839485578852652 11 7 4 -6.75100963023295 LTS-039 chr1 151171693 151188392 16700 * PIP5K1A NA 0 NA 1.171 1 NA NA NA NA NA LTS-039 chr1 151188393 151289139 100747 * c(PI4KB, PSMD4, ZNF687, PIP5K1A) NA 0 NA 1.13225195915946 379 0.429207726979146 5 NA NA -5.76538489330448 LTS-039 chr1 151289140 151298565 9426 * PI4KB NA 0 NA 1.586 1 NA NA NA NA NA LTS-039 chr1 151298566 151666687 368122 * c(POGZ, PI4KB, PSMB4, CGN, RFX5, MIR554, TUFT1, SNX27, SELENBP1) 0.4203786385019 5 0.0353624094201739 1.54891613312623 690 0.653193818027273 7 4 3 -6.73617651488769 LTS-039 chr1 151666688 151666785 98 * SNX27 NA 0 NA 0.721 1 NA NA NA NA NA LTS-039 chr1 151666786 151689071 22286 * c(CELF3, RIIAD1, SNX27) NA 0 NA 1.05122045055971 180 0.370027712611581 5 NA NA -5.76444822030354 LTS-039 chr1 151689072 152009532 320461 * c(LOC100132111, C2CD4D, TDRKH, CELF3, THEM4, RIIAD1, THEM5, LINGO4, OAZ3, RORC, S100A10, S100A11, MRPL9) 0.417127633188907 11 0.0348581541262717 1.63588317374386 575 0.873895476606168 7 4 3 -6.74197145566401 LTS-039 chr1 152009533 152056513 46981 * character(0) NA 0 NA 1.048 1 NA NA NA NA NA LTS-039 chr1 152056514 152127131 70618 * c(TCHHL1, RPTN, TCHH) 0.37 1 NA 0.906150413268524 230 0.363755512570963 4 4 0 -5.76449265674624 LTS-039 chr1 152127132 152127243 112 * RPTN NA 0 NA 0.525 1 NA NA NA NA NA LTS-039 chr1 152127244 153191370 1064127 * c(C1orf68, RPTN, LELP1, SPRR4, LCE4A, FLG, LCE5A, LCE2B, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IVL, HRNR, FLG2, SMCP, KPRP, LCE6A, CRNN, CRCT1, PRR9, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, LCE3D) 0.441429866267862 9 0.0407730848041259 0.619201064739506 1016 0.260299996668427 2 1 1 -6.9900790204969 LTS-039 chr1 153191371 153191396 26 * PRR9 NA 0 NA 1.18 1 NA NA NA NA NA LTS-039 chr1 153191397 153431593 240197 * c(PGLYRP3, S100A7A, LOR, PGLYRP4, PRR9, S100A7, S100A8, S100A9, S100A12, S100A7L2) 0.409838304207017 4 0.0245017006212494 0.863017746036541 319 0.449251566115844 5 3 2 -6.77412979870333 LTS-039 chr1 153431594 153507059 75466 * S100A7 NA 0 NA 2.159 1 NA NA NA NA NA LTS-039 chr1 153507060 153643568 136509 * c(S100A16, SNAPIN, CHTOP, ILF2, S100A14, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A13) 0.435094720660219 2 0.014142135623731 1.94795266387185 399 0.772141756915226 10 5 5 -6.79058175656981 LTS-039 chr1 153643569 153651124 7556 * character(0) NA 0 NA 1.023 1 NA NA NA NA NA LTS-039 chr1 153651125 153921164 270040 * c(SLC27A3, CRTC2, NPR1, GATAD2B, INTS3, DENND4B) 0.436737989274931 4 0.0494460985990469 1.35910255292332 779 0.60313736105231 6 3 3 -6.74494044580239 LTS-039 chr1 153921165 153921288 124 * CRTC2 NA 0 NA 1.808 1 NA NA NA NA NA LTS-039 chr1 153921289 153967698 46410 * c(JTB, CREB3L4, CRTC2, SLC39A1, RAB13, RPS27, NUP210L) 0.418 1 NA 1.93504263041843 308 0.749378642309396 10 10 0 -5.76443036153141 LTS-039 chr1 153967699 153973352 5654 * NUP210L NA 0 NA 1.114 1 NA NA NA NA NA LTS-039 chr1 153973353 154127456 154104 * NUP210L NA 0 NA 1.01196702446328 172 0.316632589375173 5 NA NA -5.76749012388419 LTS-039 chr1 154127457 154456580 329124 * c(MIR190B, HAX1, SHE, C1orf43, IL6R, C1orf189, ATP8B2, TPM3, AQP10, NUP210L, UBAP2L) 0.433765518283057 21 0.0486466853958212 1.51817940200199 968 0.670217680881844 8 4 4 -6.73705232686888 LTS-039 chr1 154456581 154456671 91 * SHE NA 0 NA 0.973 1 NA NA NA NA NA LTS-039 chr1 154456672 154926129 469458 * c(ADAR, PMVK, CHRNB2, TDRD10, SHE, KCNN3, UBE2Q1, PBXIP1) 0.37594122601851 10 0.137259041394163 1.26836302995791 779 0.702281630614938 6 4 2 -6.74720886258783 LTS-039 chr1 154926130 154926135 6 * PBXIP1 NA 0 NA 1.788 1 NA NA NA NA NA LTS-039 chr1 154926136 154960124 33989 * c(MIR4258, CKS1B, PBXIP1, SHC1, FLAD1, PYGO2) 0.4 1 NA 2.05228066854039 242 0.757640075499314 10 10 0 -5.76446313621917 LTS-039 chr1 154960125 154960233 109 * FLAD1 NA 0 NA 1.298 1 NA NA NA NA NA LTS-039 chr1 154960234 155041725 81492 * c(LOC100505666, DCST2, DCST1, EFNA3, EFNA4, ZBTB7B, LENEP, FLAD1, ADAM15) 0.440219003068112 6 0.0248408266099715 1.36751123502496 477 0.570889537588526 6 3 3 -6.82111671862495 LTS-039 chr1 155041726 155041852 127 * c(EFNA3, EFNA4) NA 0 NA 2.201 1 NA NA NA NA NA LTS-039 chr1 155041853 155247600 205748 * c(SCAMP3, FAM189B, CLK2, EFNA1, EFNA3, EFNA4, KRTCAP2, GBA, GBAP1, MTX1, MUC1, DPM3, SLC50A1, HCN3, MIR92B, THBS3, TRIM46) 0.459920138933243 6 0.044539495581637 2.39741717180672 917 1.00063212690796 12 6 6 -6.98092694652651 LTS-039 chr1 155247601 155252227 4627 * HCN3 NA 0 NA 1.454 1 NA NA NA NA NA LTS-039 chr1 155252228 155583272 331045 * c(FDPS, RUSC1, RUSC1-AS1, PKLR, MSTO1, ASH1L, HCN3, ASH1L-AS1, POU5F1P4, MIR555) 0 1 NA 1.31777082131261 722 0.585230609382416 6 6 0 -5.7658991478087 LTS-039 chr1 155583273 155583287 15 * MSTO1 NA 0 NA 0.722 1 NA NA NA NA NA LTS-039 chr1 155583288 155638590 55303 * c(MSTO1, YY1AP1) NA 0 NA 0.83344388688064 117 0.423781742436501 4 NA NA -5.76525396244353 LTS-039 chr1 155638591 155640226 1636 * YY1AP1 NA 0 NA 1.737 1 NA NA NA NA NA LTS-039 chr1 155640227 155701881 61655 * c(YY1AP1, DAP3) NA 0 NA 1.53066322522888 117 1.08731325479751 8 NA NA -5.7644972297123 LTS-039 chr1 155701882 155706818 4937 * c(YY1AP1, DAP3) NA 0 NA 0.995 1 NA NA NA NA NA LTS-039 chr1 155706819 155741022 34204 * c(MSTO2P, GON4L, YY1AP1, DAP3) 0.263064375502259 2 0.306884343034962 0.855559043373168 207 0.412946582701801 5 4 1 -6.74068186368976 LTS-039 chr1 155741023 155742972 1950 * c(GON4L, YY1AP1) NA 0 NA 2.331 1 NA NA NA NA NA LTS-039 chr1 155742973 156005142 262170 * c(KIAA0907, SYT11, RXFP4, GON4L, YY1AP1, UBQLN4, RIT1, SSR2, SCARNA4, SNORA80E, ARHGEF2) 0.426809631599788 10 0.146237250156495 1.85561627992784 675 0.865209205371936 9 5 4 -6.73330919228207 LTS-039 chr1 156005143 156005153 11 * UBQLN4 NA 0 NA 0.774 1 NA NA NA NA NA LTS-039 chr1 156005154 156006977 1824 * UBQLN4 NA 0 NA 0.779007264508937 49 0.214863037770576 3 NA NA -5.76460629578677 LTS-039 chr1 156006978 156011372 4395 * UBQLN4 NA 0 NA 2.141 1 NA NA NA NA NA LTS-039 chr1 156011373 156106119 94747 * c(LAMTOR2, LMNA, UBQLN4, RAB25, MEX3A) 0.46 1 NA 2.10721579904305 208 0.825501325333334 11 11 0 -5.76445206001933 LTS-039 chr1 156106120 156106641 522 * LMNA NA 0 NA 1.141 1 NA NA NA NA NA LTS-039 chr1 156106642 156571354 464713 * c(PMF1-BGLAP, C1orf61, PMF1, GLMP, TSACC, IQGAP3, NAXE, TTC24, SMG5, VHLL, LMNA, MIR9-1, MEF2D, GPATCH4, RHBG, BGLAP, SEMA4A, CCT3, PAQR6, TMEM79, SLC25A44) 0.407568108898656 18 0.0516126852725738 1.23679897169688 1381 0.55163153884594 5 3 2 -6.75171976951399 LTS-039 chr1 156571355 156593163 21809 * HAPLN2 NA 0 NA 0.906 1 NA NA NA NA NA LTS-039 chr1 156593164 156646579 53416 * c(NES, HAPLN2, BCAN) 0.44191860460219 8 0.0225578621074148 0.829531953220823 283 0.339388917918949 4 2 2 -6.87946438815836 LTS-039 chr1 156646580 156646585 6 * NES NA 0 NA 1.567 1 NA NA NA NA NA LTS-039 chr1 156646586 156708614 62029 * c(NES, CRABP2, RRNAD1, MRPL24, ISG20L2) 0.424566379004486 2 0.0629325035256027 1.55101586242688 209 0.665389333977538 9 5 4 -6.73497583002427 LTS-039 chr1 156708615 156711993 3379 * c(HDGF, MRPL24) NA 0 NA 5.681 1 NA NA NA NA NA LTS-039 chr1 156711994 156752038 40045 * c(HDGF, PRCC) 0.441 1 NA 2.52664302956789 93 1.29206633135777 13 13 0 -5.76441039480104 LTS-039 chr1 156752039 156924742 172704 * c(LRRC71, INSRR, PEAR1, NTRK1, PRCC, MIR765, SH2D2A, ARHGEF11) 0.388293602149202 22 0.0990818564910563 1.02288108433313 729 0.411660500486509 5 3 2 -6.75585181369688 LTS-039 chr1 156924743 156925420 678 * ARHGEF11 NA 0 NA 1.836 1 NA NA NA NA NA LTS-039 chr1 156925421 157106221 180801 * c(ETV3, CYCSP52, ETV3L, ARHGEF11) 0.384305419478465 13 0.0737597451188655 1.52864910483169 300 0.895006988874265 8 5 3 -6.73344494556709 LTS-039 chr1 157106222 157483244 377023 * c(ETV3, FCRL5) NA 0 NA 0.901 1 NA NA NA NA NA LTS-039 chr1 157483245 158152291 669047 * c(FCRL1, FCRL3, KIRREL, LOC646268, FCRL2, FCRL5, FCRL4, CD1D, CD5L) 0.39944309242803 17 0.0581149342960593 0.867333058085377 922 0.364047332738441 5 3 2 -6.87651738013788 LTS-039 chr1 158152292 158152611 320 * CD1D NA 0 NA 0.561 1 NA NA NA NA NA LTS-039 chr1 158152612 159558625 1406014 * c(CADM3-AS1, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, PYHIN1, FCER1A, ACKR1, OR10J1, APCS, IFI16, OR10R2, OR10K2, OR10K1, OR6Y1, OR6K3, MNDA, OR10J3, CADM3, SPTA1, OR6N2, OR6K2, CD1A, CD1B, CD1C, CD1D, CD1E, AIM2) 0.418324298839077 14 0.123379785332004 0.68437174608773 1455 0.424653826841193 3 2 1 -6.82648638969471 LTS-039 chr1 159558626 159682080 123455 * c(CRP, APCS) NA 0 NA 0.977 1 NA NA NA NA NA LTS-039 chr1 159682081 159811013 128933 * c(CRP, C1orf204, FCRL6, DUSP23, SLAMF8) 0.429739099771408 4 0.022553639765383 1.0534231557431 225 0.415542023308017 4 2 2 -6.74652265216404 LTS-039 chr1 159811014 159824072 13059 * C1orf204 NA 0 NA 3.213 1 NA NA NA NA NA LTS-039 chr1 159824073 160001790 177718 * c(LINC01133, CFAP45, C1orf204, VSIG8, IGSF9, TAGLN2, SLAMF9, PIGM) 0.417083788676056 5 0.0698484072832015 1.57819290229913 423 0.65839043782341 7 4 3 -6.73647937576568 LTS-039 chr1 160001791 160160807 159017 * c(KCNJ9, KCNJ10, ATP1A2, ATP1A4, CASQ1, IGSF8) 0.354383218322071 19 0.0519656881849746 1.05946039767479 614 0.39707512958266 6 4 2 -6.7500157439931 LTS-039 chr1 160160808 160162489 1682 * CASQ1 NA 0 NA 2.487 1 NA NA NA NA NA LTS-039 chr1 160162490 160183576 21087 * c(CASQ1, PEA15) 0.366063075880424 2 0.0254558441227157 2.0023558110629 84 0.835876864111214 14 9 5 -6.7366257473304 LTS-039 chr1 160183577 160183660 84 * PEA15 0 1 NA 11.515 1 NA NA NA NA NA LTS-039 chr1 160183661 160188817 5157 * c(DCAF8, PEA15) 0.357 1 NA 3.9915795745755 94 1.88390907928479 20 20 0 -5.76441274047674 LTS-039 chr1 160188818 160192464 3647 * DCAF8 NA 0 NA 1.928 1 NA NA NA NA NA LTS-039 chr1 160192465 160326552 134088 * c(COPA, NCSTN, SUMO1P3, DCAF8, PEX19) 0.40198838416744 5 0.0527854146521556 1.35999117703212 452 0.560668514601373 5 3 2 -6.7530177803359 LTS-039 chr1 160326553 160326859 307 * NCSTN NA 0 NA 1.293 1 NA NA NA NA NA LTS-039 chr1 160326860 160342015 15156 * c(NCSTN, NHLH1) 0.42 1 NA 0.793756953574841 59 0.217860713469426 3 3 0 -5.76671681925485 LTS-039 chr1 160342016 160393905 51890 * c(NHLH1, VANGL2) 0.403 1 NA 1.04370569273101 51 0.324552420612588 5 5 0 -5.76462436521814 LTS-039 chr1 160393906 160648549 254644 * c(SLAMF6, VANGL2, SLAMF1, CD84, CD48) 0.447274441945544 28 0.0491521097632634 0.913099019156346 481 0.527825589644774 4 2 2 -6.8008416077772 LTS-039 chr1 160648550 160854747 206198 * c(LY9, CD244, ITLN1, SLAMF7, CD48) 0.495 1 NA 1.00852576378294 330 0.435185406172166 5 5 0 -5.76685673304209 LTS-039 chr1 160854748 160920427 65680 * c(ITLN2, ITLN1) NA 0 NA 0.875746013688059 21 0.198422060985452 4 NA NA -5.76473715033683 LTS-039 chr1 160920428 160920757 330 * ITLN2 NA 0 NA 1.418 1 NA NA NA NA NA LTS-039 chr1 160920758 161088056 167299 * c(TSTD1, KLHDC9, ITLN2, ARHGAP30, NIT1, F11R, PFDN2, USF1, NECTIN4) 0.397008330594849 16 0.0335220698446064 1.48734811086803 530 0.666307133646101 10 6 4 -6.76276832804476 LTS-039 chr1 161088057 161088246 190 * NIT1 NA 0 NA 2.392 1 NA NA NA NA NA LTS-039 chr1 161088247 161138907 50661 * c(USP21, NIT1, UFC1, PPOX, DEDD) 0.483 1 NA 2.23327182113829 271 0.942066896597959 11 11 0 -5.7644537405928 LTS-039 chr1 161138908 161336364 197457 * c(MIR5187, FCER1G, CFAP126, APOA2, MPZ, NDUFS2, PPOX, SDHC, PCP4L1, TOMM40L, B4GALT3, ADAMTS4, NR1I3) 0.330165440597553 16 0.185704144182801 1.53006675002877 617 0.852815473305197 7 5 2 -6.74013357747285 LTS-039 chr1 161336365 161337583 1219 * CFAP126 NA 0 NA 0.943 1 NA NA NA NA NA LTS-039 chr1 161337584 161683380 345797 * c(FCGR2A, FCGR2B, FCGR3A, FCGR3B, CFAP126, HSPA6, HSPA7, RPL31P11, FCRLA, FCGR2C) 0.383540045818872 22 0.0631961318614603 0.827001847661576 499 0.37055097679837 3 2 1 -6.7902271411755 LTS-039 chr1 161683381 163295973 1612593 * c(MIR4654, DUSP12, SH2D1B, UHMK1, FCRLB, ATF6, OLFML2B, C1orf111, CCDC190, C1orf226, DDR2, HSD17B7, RGS4, UAP1, MIR556, NUF2, FCRLA, RGS5, NOS1AP) 0.390585287389281 32 0.111449033628714 1.09781247486584 1552 0.519075663739322 5 3 2 -6.74812864693096 LTS-039 chr1 163295974 164769078 1473105 * c(LOC100505795, PBX1, NUF2) NA 0 NA 1.8926998906215 93 0.826990875625842 10 NA NA -5.76672407178423 LTS-039 chr1 164769079 164776759 7681 * PBX1 NA 0 NA 1.265 1 NA NA NA NA NA LTS-039 chr1 164776760 167889929 3113170 * c(MIR921, MIR3658, GPA33, FMO9P, TADA1, FAM78B, ALDH9A1, MPC2, ILDR2, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, PBX1, TMCO1, POU2F1, ADCY10, POGK, RXRG, UCK2, MAEL, CREG1, MPZL1, CD247, DUSP27, RCSD1) 0.393891733015613 42 0.0867887686284721 1.11162451620242 2078 0.547459589851089 5 3 2 -6.75495012737653 LTS-039 chr1 167889930 167893660 3731 * MPC2 NA 0 NA 1.834 1 NA NA NA NA NA LTS-039 chr1 167893661 167967923 74263 * c(MPC2, DCAF6) 0 1 NA 2.30549319957873 60 0.871479946999699 12 12 0 -5.7644199169141 LTS-039 chr1 167967924 167967939 16 * DCAF6 NA 0 NA 1.175 1 NA NA NA NA NA LTS-039 chr1 167967940 168549458 581519 * c(LOC100505918, GPR161, TIPRL, SFT2D2, DCAF6, XCL1, XCL2, MIR557, ANKRD36BP1, TBX19) 0.425789054972118 4 0.0641482657598785 1.17074653875677 414 0.504035081744237 6 3 3 -6.74281024406315 LTS-039 chr1 168549459 169075820 526362 * c(DPT, XCL1, LINC00626) 0.389 1 NA 0.73642982682775 74 0.226355603257904 3 3 0 -5.77185964949864 LTS-039 chr1 169075821 169076053 233 * ATP1B1 NA 0 NA 3.769 1 NA NA NA NA NA LTS-039 chr1 169076054 169101567 25514 * ATP1B1 0.41853997458283 2 0.0509116882454314 2.12358683104411 64 1.33967773152918 14 8 6 -6.73356915945287 LTS-039 chr1 169101568 170136927 1035360 * c(MIR3119-1, MIR3119-2, SLC19A2, METTL11B, F5, KIFAP3, NME7, ATP1B1, C1orf112, SCYL3, CCDC181, SELE, SELL, SELP, BLZF1, METTL18) 0.399290984378467 19 0.0550518097285272 1.02818085322203 1120 0.496087856987554 5 3 2 -6.74941232893385 LTS-039 chr1 170136928 170136930 3 * character(0) NA 0 NA 1.261 1 NA NA NA NA NA LTS-039 chr1 170136931 171252357 1115427 * c(MIR1295A, MIR1295B, FMO1, FMO2, FMO3, LINC01142, FMO6P, PRRX1, MROH9, GORAB) 0.407589640661273 8 0.0337257849638607 1.35881907189423 663 0.907519655959172 5 3 2 -6.77844036076332 LTS-039 chr1 171252358 171254344 1987 * FMO1 NA 0 NA 0.841 1 NA NA NA NA NA LTS-039 chr1 171254345 173827683 2573339 * c(MIR3120, LOC100506023, DNM3OS, PRRC2C, FMO1, FMO4, DNM3, KLHL20, SLC9C2, ANKRD45, FASLG, MYOC, SUCO, METTL13, PIGC, DARS2, TOP1P1, TNFSF4, LOC730159, VAMP4, TNFSF18, CENPL, C1orf105, PRDX6) 0.402209308202536 27 0.0606726070163895 1.03549501374071 1960 0.483026403914433 5 3 2 -6.74488934697059 LTS-039 chr1 173827684 173833242 5559 * c(GAS5-AS1, GAS5) NA 0 NA 2.488 1 NA NA NA NA NA LTS-039 chr1 173833243 173840249 7007 * c(SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, GAS5, SNORD74, SNORD75, SNORD76, SNORD77, SNORD78, ZBTB37) NA 0 NA 2.26134635827309 67 0.927754522296112 12 NA NA -5.76441521312694 LTS-039 chr1 173840250 173842545 2296 * ZBTB37 NA 0 NA 1.352 1 NA NA NA NA NA LTS-039 chr1 173842546 174927334 1084789 * c(RC3H1, SERPINC1, ZBTB37, GPR52, RABGAP1L) 0.402799021952308 4 0.04571287200195 0.930876831630001 517 0.462926641356668 5 3 2 -6.798318657003 LTS-039 chr1 174927335 174933815 6481 * RABGAP1L NA 0 NA 1.93 1 NA NA NA NA NA LTS-039 chr1 174933816 174992611 58796 * c(CACYBP, MRPS14, RABGAP1L) 0.434231797295362 4 0.0372592270451227 1.51188304773219 279 0.573112264278149 8 4 4 -6.73888747696185 LTS-039 chr1 174992612 175036884 44273 * character(0) NA 0 NA 1.017 1 NA NA NA NA NA LTS-039 chr1 175036885 175957639 920755 * c(TNN, RFWD2, SCARNA3, TNR, KIAA0040) 0.359990598335765 4 0.0787924488767801 0.966043497897839 329 0.409762108341626 6 4 2 -6.94981249184728 LTS-039 chr1 175957640 175958510 871 * RFWD2 NA 0 NA 2.215 1 NA NA NA NA NA LTS-039 chr1 175958511 176525178 566668 * c(PAPPA2, RFWD2) 0.440108526442927 3 0.0685054742338158 1.60063271929444 129 5.0750977244572 8 4 4 -6.74433944721038 LTS-039 chr1 176525179 176659599 134421 * PAPPA2 NA 0 NA 0.664881848084923 64 0.23580033369576 3 NA NA -5.77099589539523 LTS-039 chr1 176659600 178448044 1788445 * c(RASAL2-AS1, ASTN1, MIR488, BRINP2, PAPPA2, LOC730102, SEC16B, RASAL2) 0.411304314053751 16 0.045673433196991 1.27155469069524 941 0.545789614254029 7 4 3 -6.80660228230714 LTS-039 chr1 178448045 178482180 34136 * RASAL2 NA 0 NA 0.694 1 NA NA NA NA NA LTS-039 chr1 178482181 178745992 263812 * c(MIR4424, C1orf220, RALGPS2, TEX35) 0.432 1 NA 0.724581329367453 132 0.276192276619246 3 3 0 -5.76512532195156 LTS-039 chr1 178745993 178753559 7567 * RALGPS2 NA 0 NA 0.966 1 NA NA NA NA NA LTS-039 chr1 178753560 180145171 1391612 * c(AXDND1, FAM163A, TDRD5, TOR1AIP2, TOR1AIP1, ABL2, RALGPS2, QSOX1, TOR3A, SOAT1, NPHS2, ANGPTL1, CEP350, FAM20B) 0.402562661214112 40 0.0828770134535165 1.13972423472115 1893 0.550773180908623 5 3 2 -6.74505624816411 LTS-039 chr1 180145172 180147873 2702 * QSOX1 NA 0 NA 0.863 1 NA NA NA NA NA LTS-039 chr1 180147874 180171891 24018 * c(FLJ23867, QSOX1) 0.415850514788847 10 0.0584333428408435 0.744760329848119 178 0.291599493729368 5 3 2 -6.76896966298191 LTS-039 chr1 180171892 180859441 687550 * c(MIR3121, LHX4-AS1, ACBD6, LHX4, XPR1) 0.339693892598931 7 0.159447856829808 1.26852667155138 452 0.550067557214522 6 4 2 -6.73868515193914 LTS-039 chr1 180859442 180882374 22933 * KIAA1614 NA 0 NA 0.982 1 NA NA NA NA NA LTS-039 chr1 180882375 180941709 59335 * KIAA1614 0.411015245510052 9 0.048494845086875 0.858636510732736 235 0.319038556290729 5 3 2 -6.75420579301672 LTS-039 chr1 180941710 180941768 59 * character(0) NA 0 NA 1.199 1 NA NA NA NA NA LTS-039 chr1 180941769 181452853 511085 * c(GM140, STX6, MR1, IER5, CACNA1E) 0.386331599905033 9 0.149940821659747 1.64718322318544 339 0.763857377405203 8 5 3 -6.73332192603387 LTS-039 chr1 181452854 182027244 574391 * c(ZNF648, CACNA1E) 0.352703790992622 11 0.18250937709409 0.883861000213636 568 0.42258997455704 4 3 1 -6.78745964777794 LTS-039 chr1 182027245 182350808 323564 * ZNF648 NA 0 NA 1.828 1 NA NA NA NA NA LTS-039 chr1 182350809 182368271 17463 * c(TEDDM1, GLUL) 0.381245308800019 8 0.0534174931219032 2.09416358972571 118 0.6994260557593 16 10 6 -6.73698266500737 LTS-039 chr1 182368272 183091440 723169 * c(TEDDM1, DHX9, LOC284648, RGSL1, LINC00272, LAMC1, RGS16, RNASEL, NPL, SHCBP1L, RGS8) 0.375461790779065 21 0.10126939555557 1.19233058778412 776 0.521051753937179 6 4 2 -6.76159647439722 LTS-039 chr1 183091441 183093704 2264 * LAMC1 NA 0 NA 1.589 1 NA NA NA NA NA LTS-039 chr1 183093705 183441893 348189 * c(NMNAT2, SMG7-AS1, LAMC1, LAMC2, SMG7) 0.398153202700999 15 0.0346344172340586 1.75312357033413 492 0.629206468290454 10 6 4 -6.74670801603128 LTS-039 chr1 183441894 183471334 29441 * SMG7 NA 0 NA 0.87 1 NA NA NA NA NA LTS-039 chr1 183471335 183711428 240094 * c(ARPC5, RGL1, APOBEC4, NCF2, SMG7) 0.385500988586294 6 0.0406546430312701 1.17303471267435 393 0.457502262375185 8 5 3 -6.80242365030719 LTS-039 chr1 183711429 183774135 62707 * RGL1 NA 0 NA 2.455 1 NA NA NA NA NA LTS-039 chr1 183774136 183861327 87192 * RGL1 0.372206668585904 2 0.0388908729652601 2.44829907283699 53 0.86382596484052 11 7 4 -6.73417379830942 LTS-039 chr1 183861328 183866862 5535 * RGL1 NA 0 NA 1.019 1 NA NA NA NA NA LTS-039 chr1 183866863 185933052 2066190 * c(GS1-279B7.1, IVNS1ABP, TSEN15, FAM129A, COLGALT2, RGL1, SWT1, RNF2, EDEM3, C1orf21, TRMT1L, HMCN1) 0.427487608668661 33 0.086551099375053 1.12942678813476 1474 0.535723105444272 5 3 2 -6.77790106761863 LTS-039 chr1 185933053 185934886 1834 * HMCN1 NA 0 NA 0.699 1 NA NA NA NA NA LTS-039 chr1 185934887 186283234 348348 * c(MIR548F1, RNU6-72P, PRG4, TPR, HMCN1) 0.396117220539084 8 0.058038010943568 0.789999346903728 609 0.232914223141453 3 2 1 -6.8843946976217 LTS-039 chr1 186283235 186283307 73 * c(MIR548F1, PRG4, TPR) NA 0 NA 1.132 1 NA NA NA NA NA LTS-039 chr1 186283308 186363119 79812 * c(MIR548F1, PRG4, C1orf27, TPR) 0.434950484160035 5 0.0495297890163082 1.22682741918127 285 0.53503075068255 6 3 3 -6.73752889946241 LTS-039 chr1 186363120 186368278 5159 * c(MIR548F1, C1orf27) 0 1 NA 1.56371099529224 13 1.06427507529653 8 8 0 -5.76441282830918 LTS-039 chr1 186368279 186389092 20814 * c(MIR548F1, OCLM, C1orf27) NA 0 NA 1.1110786126842 33 0.427105748118376 5 NA NA -5.76449704333293 LTS-039 chr1 186389093 186389137 45 * c(MIR548F1, C1orf27) NA 0 NA 0.772 1 NA NA NA NA NA LTS-039 chr1 186389138 196712765 10323628 * c(MIR1278, MIR548F1, MIR4735, CFHR4, CFH, BRINP3, KCNT2, RGS21, LOC440704, GLRX2, PDC, UCHL5, PLA2G4A, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.297460414298011 22 0.0967650007387246 0.849371698913381 1305 0.434017715033969 4 3 1 -6.80988127973101 LTS-039 chr1 196712766 196714918 2153 * c(CFHR4, CFH) NA 0 NA 0.371 1 NA NA NA NA NA LTS-039 chr1 196714919 196801248 86330 * c(CFHR4, CFHR3, CFH, CFHR1) 0.350152259342536 11 0.0614879145553306 0.416040260641041 142 0.256798125470243 3 2 1 -7.01984996659849 LTS-039 chr1 196801249 196801263 15 * c(CFHR4, CFHR1) NA 0 NA 0.758 1 NA NA NA NA NA LTS-039 chr1 196801264 197053282 252019 * c(CFHR4, F13B, ASPM, CFHR1, CFHR2, CFHR5) 0.274054973349029 4 0.107945588145139 0.646311536840085 240 0.533736185022368 4 3 1 -6.81583894279238 LTS-039 chr1 197053283 197169745 116463 * c(ASPM, ZBTB41) 0.354 1 NA 1.01357917422877 332 0.434531356719743 5 5 0 -5.76557929725047 LTS-039 chr1 197169746 197237370 67625 * CRB1 NA 0 NA 0.519 1 NA NA NA NA NA LTS-039 chr1 197237371 197408424 171054 * CRB1 NA 0 NA 0.54514423186297 126 0.191467895108143 2 NA NA -5.76640410069445 LTS-039 chr1 197408425 198725930 1317506 * c(ATP6V1G3, NEK7, DENND1B, CRB1, C1orf53, LHX9, PTPRC) 0.170621072007148 4 0.179516015998573 0.79854099823473 932 0.441151347793098 3 3 0 -6.8352982972485 LTS-039 chr1 198725931 200593907 1867977 * c(MIR181A1HG, ZNF281, NR5A2, MIR181B1, MIR181A1, LINC00862, PTPRC, KIF14) 0.317572255727122 19 0.0552461265875172 1.41928983370972 496 0.751575653533751 7 5 2 -6.7417815028825 LTS-039 chr1 200593908 201047294 453387 * c(KIF21B, CAMSAP2, GPR25, C1orf106, CACNA1S, DDX59) 0.306672368107687 22 0.105816072151357 0.959372373931525 856 0.494301992280638 4 3 1 -6.74342321665389 LTS-039 chr1 201047295 201052307 5013 * CACNA1S NA 0 NA 1.71 1 NA NA NA NA NA LTS-039 chr1 201052308 201115822 63515 * c(TMEM9, ASCL5, CACNA1S) 0.268066855623468 6 0.0590573167919663 1.35291343489055 90 0.775329824383969 8 6 2 -6.7467185459975 LTS-039 chr1 201115823 201165083 49261 * c(TMEM9, IGFN1) NA 0 NA 1.63452277952468 33 0.672345569178484 8 NA NA -5.76442099896531 LTS-039 chr1 201165084 201166234 1151 * IGFN1 NA 0 NA 0.729 1 NA NA NA NA NA LTS-039 chr1 201166235 201166281 47 * IGFN1 0.103 1 NA 0.239 1 NA NA NA NA NA LTS-039 chr1 201166282 201197808 31527 * IGFN1 0.152077472488035 21 0.0857923850544635 0.641306613853323 246 0.368437663019732 2 2 0 -6.7432068290852 LTS-039 chr1 201197809 201198003 195 * IGFN1 NA 0 NA 0.637642567781341 4 0.24900401603187 3 NA NA -5.76443254146949 LTS-039 chr1 201198004 201252701 54698 * c(PKP1, IGFN1) 0.237 1 NA 1.17953150291867 9 0.441115347726646 6 6 0 -5.76502022739117 LTS-039 chr1 201252702 201966729 714028 * c(MIR1231, MIR5191, TIMM17A, CSRP1, SHISA4, PHLDA3, LMOD1, RPS10P7, LAD1, PKP1, IPO9, RNPEP, TNNI1, TNNT2, NAV1) 0.26321578564659 27 0.0862793283882212 1.11802946866132 1282 0.584783584298019 5 4 1 -6.75487565598283 LTS-039 chr1 201966730 201969037 2308 * RNPEP NA 0 NA 2.395 1 NA NA NA NA NA LTS-039 chr1 201969038 201981805 12768 * c(ELF3, RNPEP) 0.255014289066129 3 0.0438900140502749 2.55742358667927 115 1.42817267575108 17 13 4 -6.74364064741504 LTS-039 chr1 201981806 201986349 4544 * ELF3 NA 0 NA 2.39302756624302 57 0.585823807842073 12 NA NA -5.76441484472388 LTS-039 chr1 201986350 202091874 105525 * character(0) NA 0 NA 1.15 1 NA NA NA NA NA LTS-039 chr1 202091875 202092332 458 * GPR37L1 0.308 1 NA 1.05647940132431 11 0.198098598040104 5 5 0 -5.76441165651497 LTS-039 chr1 202092333 202126935 34603 * c(ARL8A, PTPN7, GPR37L1) 0.324703837453815 3 0.0552931581059839 1.39301415376473 161 0.523097740798573 10 7 3 -6.75385954744239 LTS-039 chr1 202126936 203149785 1022850 * c(PCAT6, KDM5B, CHI3L1, SYT2, ADORA1, LOC148709, PTPRVP, UBE2T, NA, MYBPH, MYOG, PPP1R12B, ADIPOR1, CYB5R1, PTPN7, RABIF, KLHL12, LGR6, MGAT4EP, PPFIA4, TMEM183A) 0.326772615378206 40 0.0938032276247492 0.908721005996681 1809 0.415941262641224 4 3 1 -6.79192621914593 LTS-039 chr1 203149786 203150287 502 * CHI3L1 NA 0 NA 1.793 1 NA NA NA NA NA LTS-039 chr1 203150288 203310055 159768 * c(CHI3L1, CHIT1, FMOD, LINC01136, BTG2) 0.280808009500206 8 0.172384485132177 1.3563917184632 198 0.685546468477508 8 6 2 -6.73957770045972 LTS-039 chr1 203310056 204242961 932906 * c(ZBED6, GOLT1A, PLEKHA6, FMOD, OPTC, LINC00303, KISS1, ATP2B4, LAX1, ETNK2, PRELP, REN, SNRPE, SNORA77, LINC00260, SOX13, ZC3H11A) 0.361176354764085 25 0.0931656767985578 0.84876046950634 1216 0.373383452351759 3 2 1 -6.86275043336884 LTS-039 chr1 204242962 204372562 129601 * c(LINC00628, PLEKHA6, PPP1R15B) NA 0 NA 1.819 1 NA NA NA NA NA LTS-039 chr1 204372563 204392052 19490 * c(PIK3C2B, PPP1R15B) 0.371694613973433 3 0.0640494600549711 1.59895348172378 113 0.789106083108114 11 7 4 -6.73475339339875 LTS-039 chr1 204392053 204586424 194372 * c(LRRN2, MDM4, PIK3C2B) NA 0 NA 0.985159515986344 444 0.421361347112259 5 NA NA -5.76911348916282 LTS-039 chr1 204586425 205047379 460955 * c(LRRN2, NFASC, MDM4, CNTN2) 0.330795069231115 25 0.114231606834536 0.65650765199436 673 0.330536427823531 3 2 1 -6.82312291747474 LTS-039 chr1 205047380 205739163 691784 * c(MFSD4A, ELK4, DSTYK, LEMD1-AS1, LOC284578, TMEM81, MIR135B, CDK18, KLHDC8A, RBBP5, NUCKS1, NUAK2, SLC45A3, RAB29, LEMD1, TMCC2) 0.335437008734675 33 0.0796371149386866 1.0494470948095 1321 0.492348985810235 6 4 2 -6.82176102291016 LTS-039 chr1 205739164 207143550 1404387 * c(IL24, SLC26A9, PM20D1, CTSE, EIF2D, SRGAP2, SLC41A1, LOC284581, IL19, IL10, C1orf186, IL20, PIGR, AVPR1B, SRGAP2C, FAM72A, RASSF5, FCAMR, DYRK3, RAB29, FCMR, MAPKAPK2, IKBKE) 0.344030083112809 29 0.0525826349428872 0.859756208208918 1683 0.370472911821789 3 2 1 -7.10134023425349 LTS-039 chr1 207143551 207143595 45 * FCAMR NA 0 NA 1.297 1 NA NA NA NA NA LTS-039 chr1 207143596 207228207 84612 * c(PFKFB2, YOD1, C1orf116, FCAMR) 0.374970285475913 2 0.0134350288425444 1.2488990205688 272 0.390558330907181 11 7 4 -6.85428487499843 LTS-039 chr1 207228208 207642658 414451 * c(CR2, CD55, PFKFB2, C4BPA, C4BPB) 0.291311706427643 7 0.154528776793007 0.899833196929802 478 0.360175469260422 4 3 1 -6.73416798345236 LTS-039 chr1 207642659 207642961 303 * CR2 NA 0 NA 0.406 1 NA NA NA NA NA LTS-039 chr1 207642962 207912267 269306 * c(CR1, CR1L, CR2) 0.338367111115343 10 0.0584998575496841 0.632955010747437 290 0.231646809523136 3 2 1 -6.95626415245692 LTS-039 chr1 207912268 207912275 8 * character(0) 0.36 1 NA 1.939 1 NA NA NA NA NA LTS-039 chr1 207912276 209812044 1899769 * c(MIR4260, LOC148696, LAMB3, MIR205, MIR29C, CD46, PLXNA2, CAMK1G, MIR205HG, CD34) 0.383867828724537 19 0.105981654596968 1.02280788189234 758 0.538337698993971 5 3 2 -6.77037768926532 LTS-039 chr1 209812045 209823224 11180 * LAMB3 NA 0 NA 1.878 1 NA NA NA NA NA LTS-039 chr1 209823225 210008519 185295 * c(C1orf74, DIEXF, HSD11B1, IRF6, LAMB3, G0S2, TRAF3IP3) 0.430816867379113 6 0.0493342342260085 1.5672214094796 308 0.630892856434914 8 4 4 -6.7332708400663 LTS-039 chr1 210008520 210008613 94 * DIEXF NA 0 NA 1.139 1 NA NA NA NA NA LTS-039 chr1 210008614 210337648 329035 * c(SYT14, DIEXF) NA 0 NA 0.82635339688505 216 0.386425755276593 4 NA NA -5.77206275857158 LTS-039 chr1 210337649 210404967 67319 * SERTAD4-AS1 NA 0 NA 2.19 1 NA NA NA NA NA LTS-039 chr1 210404968 210502550 97583 * c(HHAT, SERTAD4, SERTAD4-AS1) 0.431618488025634 4 0.0717333023543923 1.93696122345476 138 2.20285061574551 10 5 5 -6.73313369111305 LTS-039 chr1 210502551 211381486 878936 * c(KCNH1, HHAT) 0.43736204898307 8 0.0437441832867934 0.600416219339511 205 0.212407119038128 2 1 1 -6.91948043661914 LTS-039 chr1 211381487 211432694 51208 * character(0) NA 0 NA 1.991 1 NA NA NA NA NA LTS-039 chr1 211432695 211848998 416304 * c(RD3, NEK2, RCOR3, TRAF5, SLC30A1, LINC00467) 0.38725778792766 11 0.141941793448134 1.17626283105148 521 0.756516232200053 5 3 2 -6.74843850928483 LTS-039 chr1 211848999 211916767 67769 * character(0) NA 0 NA 0.785 1 NA NA NA NA NA LTS-039 chr1 211916768 214826808 2910041 * c(MIR3122, LINC00538, CENPF, TATDN3, SPATA45, FAM71A, INTS7, NSL1, RPS6KC1, FLVCR1, NENF, ATF3, DTL, TMEM206, PPP2R5A, BATF3, PROX1, SMYD2, PTPN14, FLVCR1-AS1, SNORA16B, VASH2, ANGEL2, LPGAT1) 0.35505380707724 47 0.0701158879486719 0.786712921611211 1965 0.353784319667191 3 2 1 -6.90300568962951 LTS-039 chr1 214826809 218036267 3209459 * c(CENPF, SPATA17, ESRRG, KCNK2, KCTD3, GPATCH2, USH2A) 0.389705403317863 29 0.0989908315404212 0.650335644620363 1212 0.286572106157341 3 2 1 -6.93641482103571 LTS-039 chr1 218036268 218458573 422306 * c(LINC00210, SPATA17) NA 0 NA 1.204 1 NA NA NA NA NA LTS-039 chr1 218458574 219385713 927140 * c(LYPLAL1, RRP15, LYPLAL1-AS1, TGFB2, TGFB2-AS1) 0.355012018915373 14 0.0759684723501058 0.911170770650366 378 0.513640525792672 3 2 1 -6.8865851805413 LTS-039 chr1 219385714 220102001 716288 * c(LYPLAL1, RNU5F-1, SLC30A10) 0.311734961102942 4 0.212474900478464 0.49195097484251 113 0.484001308298741 2 1 1 -6.92601881317244 LTS-039 chr1 220102002 220141824 39823 * c(RNU5F-1, SLC30A10) NA 0 NA 0.659 1 NA NA NA NA NA LTS-039 chr1 220141825 225685618 5543794 * c(MIR320B2, MIR4742, BPNT1, DUSP10, DNAH14, BROX, CNIH3, CCDC185, EPRS, FBXO28, RAB3GAP2, RNU5F-1, CNIH4, HLX, MIA3, CAPN8, LBR, C1orf140, FAM177B, MIR194-1, MIR215, MARK1, NVL, MARC2, SUSD4, IARS2, ENAH, MARC1, AIDA, SNORA36B, AURKAPS1, TLR5, TP53BP2, C1orf115, HHIPL2, WDR26, CAPN2, DISP1, DEGS1, TAF1A) 0.37068821908694 60 0.0690683338858171 0.804778226273519 3942 0.362088788011229 3 2 1 -7.09722940498454 LTS-039 chr1 225685619 225685924 306 * ENAH NA 0 NA 0.898 1 NA NA NA NA NA LTS-039 chr1 225685925 226553806 867882 * c(LEFTY1, PARP1, SDE2, EPHX1, LIN9, PYCR2, H3F3A, H3F3AP4, ENAH, ACBD3, SRP9, LEFTY2, MIXL1, TMEM63A) 0.354164068745486 15 0.0425112870166209 1.00764724533571 892 0.510279580124262 6 4 2 -6.82646820441618 LTS-039 chr1 226553807 226555190 1384 * PARP1 NA 0 NA 0.592 1 NA NA NA NA NA LTS-039 chr1 226555191 227216933 661743 * c(PARP1, ITPKB, STUM, PSEN2, COQ8A, CDC42BPA) 0.382155790839436 14 0.0497497031853756 0.727773658846397 789 0.290404644188409 3 2 1 -6.76482554258054 LTS-039 chr1 227216934 227218077 1144 * CDC42BPA NA 0 NA 0.973 1 NA NA NA NA NA LTS-039 chr1 227218078 227935914 717837 * c(NA, SNAP47, ZNF678, ZNF847P, JMJD4, CDC42BPA) 0.316691170014355 8 0.130211915188829 0.971530331464188 310 0.661051368248016 4 3 1 -6.75318645162019 LTS-039 chr1 227935915 227946642 10728 * SNAP47 NA 0 NA 0.374 1 NA NA NA NA NA LTS-039 chr1 227946643 228194956 248314 * c(MIR5008, SNAP47, PRSS38, WNT9A, WNT3A) 0.348764796626734 4 0.0561211487171577 0.580251546177244 201 0.276333640812653 3 2 1 -6.90663842913387 LTS-039 chr1 228194957 228210304 15348 * WNT3A NA 0 NA 0.836 1 NA NA NA NA NA LTS-039 chr1 228210305 228432244 221940 * c(MIR3620, MRPL55, IBA57, GUK1, ARF1, GJC2, C1orf145, C1orf35, OBSCN, WNT3A) 0.322038731793935 17 0.136452318756838 0.970030606145006 576 0.361125391259823 4 3 1 -6.75950255263071 LTS-039 chr1 228432245 228433057 813 * OBSCN NA 0 NA 0.629 1 NA NA NA NA NA LTS-039 chr1 228433058 228554775 121718 * OBSCN 0.391730092377353 31 0.0470233984309939 0.582586428589143 649 0.181921775772288 3 2 1 -6.93260609601012 LTS-039 chr1 228554776 228594155 39380 * c(TRIM11, OBSCN) 0.388536763049356 2 0.0148492424049175 0.781265850213543 224 0.257104818259147 8 5 3 -6.95472088853177 LTS-039 chr1 228594156 229385621 791466 * c(MIR4666A, HIST3H2BB, RNF187, TRIM17, DUSP5P1, RHOU, TRIM11, HIST3H3, HIST3H2A) 0.392238730890046 2 0.128693434175952 1.2068279349039 295 0.478071920713171 5 3 2 -6.7699223483052 LTS-039 chr1 229385622 229385693 72 * character(0) NA 0 NA 1.605 1 NA NA NA NA NA LTS-039 chr1 229385694 229567070 181377 * c(SPHAR, CCSAP, ACTA1, RAB4A) NA 0 NA 1.65712507237386 218 0.645629379432336 8 NA NA -5.76459518662471 LTS-039 chr1 229567071 229580849 13779 * c(NUP133, ACTA1) 0.484998168492025 2 0.0014142135623731 0.718666992576163 61 0.235217627401598 4 2 2 -23.8099121940283 LTS-039 chr1 229580850 229584780 3931 * NUP133 NA 0 NA 2.2 1 NA NA NA NA NA LTS-039 chr1 229584781 229584920 140 * NUP133 0 1 NA 3.62016137857995 3 2.89788526342918 19 19 0 -5.76441013500172 LTS-039 chr1 229584921 229622162 37242 * NUP133 0.436 1 NA 1.19110919401951 61 0.274158289605773 6 6 0 -5.76516457076737 LTS-039 chr1 229622163 231155163 1533001 * c(CAPN9, AGT, COG2, ABCB10, GALNT2, TAF5L, FAM89A, NUP133, ARV1, TTC13, PGBD5, C1orf198, URB2) 0.392941187392614 37 0.0479577047140649 1.30038134683004 1211 0.540093142162661 8 5 3 -6.89396475925971 LTS-039 chr1 231155164 231413625 258462 * c(MIR1182, C1orf131, LOC149373, FAM89A, TRIM67, GNPAT) 0.458819284558963 9 0.0286487347015536 0.852592256551954 403 0.308321127090678 4 2 2 -7.26509544732164 LTS-039 chr1 231413626 232575137 1161512 * c(LINC00582, TSNAX-DISC1, EXOC8, DISC2, DISC1, EGLN1, SIPA1L2, SNRPD2P2, TSNAX, SPRTN, GNPAT) 0.391239852168621 18 0.112142183325659 1.44291121239318 784 0.715653533133144 8 5 3 -6.75201442587778 LTS-039 chr1 232575138 234460234 1885097 * c(MIR4671, MIR4427, SLC35F3, KCNK1, MAP10, SIPA1L2, PCNX2, NTPCR, MLK4) 0.434934501256671 39 0.0784964563354294 0.996735994874016 982 0.419307922097941 4 2 2 -6.81347803660864 LTS-039 chr1 234460235 234509125 48891 * SLC35F3 NA 0 NA 1.267 1 NA NA NA NA NA LTS-039 chr1 234509126 234614368 105243 * c(COA6, TARBP1) NA 0 NA 1.53861817845783 191 1.15104541697653 8 NA NA -5.76451800855359 LTS-039 chr1 234614369 234740000 125632 * c(LINC01354, TARBP1) NA 0 NA 14.833 1 NA NA NA NA NA LTS-039 chr1 234740001 234744902 4902 * IRF2BP2 NA 0 NA 11.4626264250158 89 3.21675015985219 20 NA NA -5.76475999460822 LTS-039 chr1 234744903 234744905 3 * IRF2BP2 NA 0 NA 3.148 1 NA NA NA NA NA LTS-039 chr1 234744906 235294837 549932 * c(LINC00184, LINC01132, RBM34, IRF2BP2, ARID4B, SNORA14B, TOMM20) 0.485 1 NA 3.11769118570688 113 1.73015450666713 16 16 0 -5.76445227400528 LTS-039 chr1 235294838 235507662 212825 * c(MIR4753, RBM34, ARID4B, GGPS1) NA 0 NA 1.99260780066576 286 0.646788081126179 10 NA NA -5.76443551049751 LTS-039 chr1 235507663 236767459 1259797 * c(LGALS8-AS1, MIR1537, LYST, EDARADD, B3GALNT2, GNG4, LGALS8, NID1, HEATR1, ERO1B, TBCE, GPR137B, GGPS1) 0.43490484009364 29 0.0471996336714514 1.17552305494991 1472 0.567866559917028 6 3 3 -6.74725185496063 LTS-039 chr1 236767460 236849823 82364 * c(HEATR1, ACTN2) NA 0 NA 0.695 1 NA NA NA NA NA LTS-039 chr1 236849824 240255352 3405529 * c(LOC100130331, CHRM3, LINC01139, MTR, FMN2, ZP4, RYR2, MT1HL1, RPS7P5, ACTN2) 0.391462262996396 11 0.136684374314763 0.862066959349442 1385 0.369652712429087 4 2 2 -6.79911257092671 LTS-039 chr1 240255353 240257070 1718 * FMN2 NA 0 NA 0.374073983917272 39 0.169881922953235 1 NA NA -5.76456379738894 LTS-039 chr1 240257071 240286417 29347 * FMN2 NA 0 NA 0.624 1 NA NA NA NA NA LTS-039 chr1 240286418 242428756 2142339 * c(MIR3123, CHML, WDR64, PLD5, FH, OPN3, MAP1LC3C, FMN2, RGS7, GREM2, KMO, EXO1) 0.369485517512975 23 0.11306834478706 0.905720162259683 997 0.381054157044585 4 2 2 -6.90605084137851 LTS-039 chr1 242428757 242451645 22889 * PLD5 NA 0 NA 0.612 1 NA NA NA NA NA LTS-039 chr1 242451646 243329383 877738 * c(PLD5, LINC01347, CEP170) 0.214 1 NA 0.614387940304655 161 0.302891600128778 2 2 0 -5.88477536820638 LTS-039 chr1 243329384 244218660 889277 * c(AKT3, MIR4677, ZBTB18, SDCCAG8, LOC339529, CEP170) 0.390473475768925 2 0.0480832611206853 0.949785861476659 361 0.413335512627174 5 3 2 -6.84920644745523 LTS-039 chr1 244218661 244218794 134 * ZBTB18 NA 0 NA 1.221 1 NA NA NA NA NA LTS-039 chr1 244218795 244993169 774375 * c(ZBTB18, ADSS, C1orf100, C1orf101, DESI2) 0.443624623010673 6 0.0437081228148727 1.41034572621159 428 0.783399580922988 6 3 3 -6.79570787779382 LTS-039 chr1 244993170 244993268 99 * character(0) NA 0 NA 1.933 1 NA NA NA NA NA LTS-039 chr1 244993269 245290451 297183 * c(COX20, NA, HNRNPU, EFCAB2) 0.397533702693284 10 0.142834830797284 2.50091435589599 384 1.18544005856278 13 8 5 -6.73547656414459 LTS-039 chr1 245290452 245318279 27828 * character(0) NA 0 NA 1.439 1 NA NA NA NA NA LTS-039 chr1 245318280 247051791 1733512 * c(LINC01341, CNST, LOC255654, AHCTF1, SCCPDH, KIF26B, TFB2M, SMYD3) 0.432762509568916 12 0.0461870374049086 1.25230884218733 788 0.637932372257581 6 3 3 -6.73423236739827 LTS-039 chr1 247051792 247051890 99 * AHCTF1 NA 0 NA 1.739 1 NA NA NA NA NA LTS-039 chr1 247051891 247094722 42832 * AHCTF1 NA 0 NA 1.92403537517907 97 0.934257020531487 10 NA NA -5.76442988767751 LTS-039 chr1 247094723 247108956 14234 * c(ZNF670-ZNF695, AHCTF1, ZNF695) NA 0 NA 1.243 1 NA NA NA NA NA LTS-039 chr1 247108957 247740768 631812 * c(MIR3916, ZNF670-ZNF695, NLRP3, OR2B11, GCSAML, GCSAML-AS1, C1orf229, OR2W5, ZNF695, ZNF124, ZNF669, OR2C3, ZNF496, ZNF670) 0.408318954839574 21 0.0475860623852545 1.04611226951052 745 0.62156148946374 5 3 2 -6.73403851601687 LTS-039 chr1 247740769 248569369 828601 * c(OR2M5, OR2M3, OR2T12, OR14C36, OR2T4, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR13G1, OR2L5, OR2G3, OR2G2) 0.408361494266562 44 0.0599271359895246 0.620812511406332 682 0.279202580981093 2 1 1 -6.96781975490018 LTS-039 chr1 248569370 248570481 1112 * OR2T1 NA 0 NA 0.652397099663153 23 0.159813305109802 3 NA NA -5.76460484738193 LTS-039 chr1 248570482 248604490 34009 * character(0) NA 0 NA 0.358 1 NA NA NA NA NA LTS-039 chr1 248604491 248604614 124 * character(0) 0.301 1 NA 0.387168664767258 3 0.0783092161455683 1 1 0 -5.76453052070832 LTS-039 chr1 248604615 248801897 197283 * c(OR2T34, OR2T10, OR2T11, OR2T3, OR2T29, OR2G6, OR2T2, OR2T5, OR2T35) 0.325518667628678 16 0.0848472156290352 0.437519783401133 243 0.255017506616206 3 2 1 -7.30322395808507 LTS-039 chr1 248801898 248814053 12156 * c(OR2T27, OR2T35) NA 0 NA 0.446918610129458 32 1.02230546250588 2 NA NA -5.76461652714928 LTS-039 chr1 248814054 249106584 292531 * c(OR14I1, OR2T27, LYPD8, SH3BP5L) NA 0 NA 0.834013081436613 75 0.281913674730404 4 NA NA -5.77427891668735 LTS-039 chr1 249106585 249107177 593 * SH3BP5L NA 0 NA 1.85 1 NA NA NA NA NA LTS-039 chr1 249107178 249214134 106957 * c(MIR3124, PGBD2, ZNF692, ZNF672, SH3BP5L) NA 0 NA 1.39278606918413 255 0.611133841258566 7 NA NA -5.76455017070668 LTS-039 chr2 38824 218386 179563 * c(SH3YL1, FAM110C) 0.383 1 NA 1.5573791806142 85 0.607359133303125 8 8 0 -5.76477726988346 LTS-039 chr2 218387 1133367 914981 * c(TMEM18, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2) 0.467292102132719 9 0.0278522889544109 1.29499394277844 301 0.451335811558453 6 3 3 -7.62588109605474 LTS-039 chr2 1133368 1133374 7 * SNTG2 NA 0 NA 0.973 1 NA NA NA NA NA LTS-039 chr2 1133375 1547342 413968 * c(SNTG2, TPO) 0.446884017069719 13 0.061596807276568 0.866895091120261 243 0.362732181852471 4 2 2 -6.77569762717623 LTS-039 chr2 1547343 1794772 247430 * c(MYT1L, PXDN) 0.448776008828077 3 0.00230940107675851 1.39566343120269 267 0.631149456798278 6 3 3 -14.4916572643683 LTS-039 chr2 1794773 3481531 1686759 * c(MYT1L, TRAPPC12, TSSC1, MYT1L-AS1) 0.413631044040488 16 0.058406870315058 0.917782423474136 332 0.417105422556029 4 2 2 -6.78863268502723 LTS-039 chr2 3481532 3481548 17 * TRAPPC12 NA 0 NA 1.407 1 NA NA NA NA NA LTS-039 chr2 3481549 3673648 192100 * c(RNASEH1-AS1, RNASEH1, TRAPPC12, ADI1, RPS7, COLEC11) 0.462674186878958 14 0.0230632193744084 1.33518697534817 254 0.658103268386368 6 3 3 -7.71020346244411 LTS-039 chr2 3673649 3673698 50 * COLEC11 NA 0 NA 0.92 1 NA NA NA NA NA LTS-039 chr2 3673699 5838010 2164312 * c(LINC01304, ALLC, SOX11, LINC01249, COLEC11) 0.274438279263401 5 0.172565929429885 0.687059136963757 280 0.486719927382487 3 2 1 -6.92229216975701 LTS-039 chr2 5838011 5838014 4 * SOX11 0.453 1 NA 1.711 1 NA NA NA NA NA LTS-039 chr2 5838015 9022771 3184757 * c(LOC100506274, CMPK2, MBOAT2, LINC01105, LINC00298, LINC00299, ID2, RNF144A-AS1, LOC400940, LINC00487, KIDINS220, SOX11, RSAD2, RNF144A) 0.46934663930782 16 0.0215629891248871 0.961250400546451 907 0.442610813303433 4 2 2 -8.27640159014302 LTS-039 chr2 9022772 9028099 5328 * MBOAT2 NA 0 NA 1.869 1 NA NA NA NA NA LTS-039 chr2 9028100 10959476 1931377 * c(SNORA80B, MIR4261, PDIA6, YWHAQ, MBOAT2, CYS1, ATP6V1C2, IAH1, GRHL1, HPCAL1, C2orf48, ODC1, CPSF3, RRM2, ADAM17, NOL10, KLF11, ASAP2, TAF1B, ITGB1BP1) 0.431018834545212 43 0.101711668779405 1.37343869979393 1603 0.625413997554599 7 4 3 -6.74521688574368 LTS-039 chr2 10959477 10960952 1476 * PDIA6 0.405 1 NA 0.993470100641716 3 0.252306031107727 5 5 0 -5.76449096614828 LTS-039 chr2 10960953 10977561 16609 * PDIA6 0 1 NA 1.09399754549498 7 2.57434663000703 5 5 0 -5.76441074443061 LTS-039 chr2 10977562 11264767 287206 * c(PDIA6, FLJ33534, KCNF1) NA 0 NA 0.898171544913925 82 0.242150255649983 4 NA NA -5.7645628682282 LTS-039 chr2 11264768 11264830 63 * FLJ33534 0.37 1 NA 2.245 1 NA NA NA NA NA LTS-039 chr2 11264831 11781339 516509 * c(MIR4429, LINC00570, C2orf50, PQLC3, E2F6, FLJ33534, ROCK2, GREB1) 0.237339676108745 10 0.164386265984858 1.59935044031841 704 0.907541205492984 9 7 2 -6.74079104218081 LTS-039 chr2 11781340 11817812 36473 * c(LPIN1, NTSR2, GREB1) 0.35 1 NA 1.82137155381181 69 0.53549079518756 9 9 0 -5.7644275610779 LTS-039 chr2 11817813 12858709 1040897 * c(MIR4262, LPIN1, TRIB2) 0.371761849881553 7 0.163132724228726 1.43284936209696 234 0.752817955659031 8 5 3 -6.75232642913065 LTS-039 chr2 12858710 12863358 4649 * TRIB2 NA 0 NA 1.082 1 NA NA NA NA NA LTS-039 chr2 12863359 13555050 691692 * c(MIR3125, LOC100506474, TRIB2) 0.415688834041288 2 0.0664680374315355 0.900850941940807 77 0.335874099626224 4 2 2 -6.76383723391196 LTS-039 chr2 14774033 14780164 6132 * FAM84A 0.168917686611138 2 0.308298556597335 2.3359597725037 123 1.22279294345648 14 12 2 -6.73315765351724 LTS-039 chr2 14780165 14789302 9138 * FAM84A NA 0 NA 0.581 1 NA NA NA NA NA LTS-039 chr2 14789303 15651471 862169 * NBAS NA 0 NA 1.11940897060321 253 0.391713715712742 5 NA NA -5.77066643233594 LTS-039 chr2 15651472 15674614 23143 * NBAS NA 0 NA 1.638 1 NA NA NA NA NA LTS-039 chr2 15674615 15771165 96551 * c(DDX1, NBAS) 0.418796622736152 5 0.217065658269566 2.32283766573397 169 0.938553170404902 12 7 5 -6.73365502730161 LTS-039 chr2 15771166 16087095 315930 * c(MYCNOS, DDX1, MYCN) 0.34445425346981 4 0.0388072158238645 4.7306486918105 79 2.79927388716407 18 12 6 -6.7402793550391 LTS-039 chr2 16730743 17966613 1235871 * c(GEN1, RAD51AP2, VSNL1, SMC6, FAM49A) 0.387409047541829 18 0.110196734350152 1.20528336300375 568 0.543120110557864 5 3 2 -6.78629037474429 LTS-039 chr2 17966614 18114212 147599 * c(MSGN1, GEN1, KCNS3, SMC6) 0.416017287430174 6 0.0436653943835008 0.735680852879176 73 0.291071725901851 4 2 2 -6.83849494667058 LTS-039 chr2 18735952 20850813 2114862 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, PUM2, RHOB, LINC00954, MATN3, WDR35, RDH14, SDC1, HS1BP3, NT5C1B, LAPTM4A) 0.38248480422601 31 0.0563871601338194 1.58135723659553 1089 0.789154092005233 8 5 3 -6.73480437666291 LTS-039 chr2 20850814 20866390 15577 * HS1BP3 NA 0 NA 0.648 1 NA NA NA NA NA LTS-039 chr2 20866391 21364724 498334 * c(GDF7, APOB, LDAH) 0.399595051111355 14 0.121870945973712 0.785011491149278 672 0.327651232900865 3 2 1 -6.79257333890539 LTS-039 chr2 21364725 24291419 2926695 * c(KLHL29, UBXN2A, FKBP1B, MFSD2B, SF3B6, ATAD2B, LOC645949, WDCP) 0.39191412671305 22 0.13635538142402 1.10673052155743 778 0.627510556396279 5 3 2 -6.74491270131266 LTS-039 chr2 24291420 24296886 5467 * SF3B6 NA 0 NA 2.198 1 NA NA NA NA NA LTS-039 chr2 24296887 24360934 64048 * c(PFN4, FAM228B, SF3B6, TP53I3) 0.330746103926486 2 0.0876812408671319 1.97305301763405 115 0.638021884973837 13 9 4 -6.74688235379976 LTS-039 chr2 24360935 24362192 1258 * FAM228B NA 0 NA 1.27 1 NA NA NA NA NA LTS-039 chr2 24362193 27275968 2913776 * c(MIR1301, CENPA, RAB10, ADCY3, CIB4, GAREM2, ADGRF3, DNMT3A, DTNB, MAPRE3, EFR3B, HADHA, HADHB, C2orf70, FAM228B, KCNK3, KIF3C, PTRHD1, ITSN2, DNAJC27, POMC, TMEM214, SLC35F6, ASXL2, DPYSL5, AGBL5, FAM228A, DNAJC27-AS1, CENPO, SELENOI, NCOA1, DRC1, OTOF) 0.389264308863405 67 0.111891904449431 1.17392070500493 3505 0.535066786395616 5 3 2 -6.79794653658659 LTS-039 chr2 27275969 27321939 45971 * c(OST4, EMILIN1, KHK, AGBL5) 0.375 1 NA 1.75978641620796 235 0.608299906113271 9 9 0 -5.76443785996398 LTS-039 chr2 27321940 27430682 108743 * c(PREB, CGREF1, TCF23, PRR30, KHK, ABHD1, SLC5A6) 0.362 1 NA 1.15486487881064 374 0.397896887753738 5 5 0 -5.76668325259175 LTS-039 chr2 27430683 27434848 4166 * SLC5A6 NA 0 NA 2.067 1 NA NA NA NA NA LTS-039 chr2 27434849 27440617 5769 * c(ATRAID, CAD, SLC5A6) NA 0 NA 2.53806930024466 59 0.835618248600003 13 NA NA -5.76441051531132 LTS-039 chr2 27440618 27440768 151 * CAD NA 0 NA 1.078 1 NA NA NA NA NA LTS-039 chr2 27440769 27587386 146618 * c(GTF3C2-AS1, DNAJC5G, GTF3C2, MPV17, TRIM54, UCN, SLC30A3, CAD, EIF2B4) 0.45 1 NA 1.15235550978089 665 0.441012522009585 5 5 0 -5.76676100043532 LTS-039 chr2 27587387 27673056 85670 * c(ZNF513, KRTCAP3, FTH1P3, IFT172, NRBP1, PPM1G, EIF2B4, SNX17) NA 0 NA 1.7746765373881 481 0.628600621737954 9 NA NA -5.76442547773417 LTS-039 chr2 27673057 27676008 2952 * IFT172 NA 0 NA 0.872 1 NA NA NA NA NA LTS-039 chr2 27676009 27917791 241783 * c(GPN1, SLC4A1AP, IFT172, GCKR, FNDC4, CCDC121, C2orf16, ZNF512, SUPT7L) 0.059 1 NA 1.20579062552483 973 0.467523383254614 6 6 0 -5.76537487149516 LTS-039 chr2 27917792 28817459 899668 * c(BRE-AS1, MIR4263, LOC100505716, PLB1, SLC4A1AP, FOSL2, RBKS, MRPL33, BRE) 0.295665997881766 4 0.015305227865014 1.82664897591219 615 1.03124912554972 11 8 3 -6.81158547764939 LTS-039 chr2 28817460 28817464 5 * PLB1 NA 0 NA 2.75 1 NA NA NA NA NA LTS-039 chr2 28817465 28975028 157564 * c(PLB1, PPP1CB) 0.374565519575326 13 0.0390566649488033 3.28982415160493 199 1.22502531402375 19 12 7 -6.73518773703351 LTS-039 chr2 28975029 29293546 318518 * c(FAM179A, WDR43, SPDYA, SNORD53, C2orf71, PPP1CB, TRMT61B, SNORD92) 0.305802548713412 10 0.111735849215907 1.72366850052367 526 0.617075908442985 10 7 3 -6.74830562796513 LTS-039 chr2 29293547 33174019 3880473 * c(LOC100271832, MIR4765, ALK, LCLAT1, LINC00486, EHD3, C2orf71, LTBP1, CAPN14, MEMO1, YPEL5, TTC27, SLC30A6, BIRC6, NLRC4, SPAST, SRD5A2, MIR558, XDH, GALNT14, CLIP4, LBH, YIPF4, DPY30, CAPN13) 0.364006324357382 39 0.146192711999728 1.20300158941865 2568 0.551438561467531 6 4 2 -6.74786447059388 LTS-039 chr2 33174020 33246000 71981 * LTBP1 NA 0 NA 0.645 1 NA NA NA NA NA LTS-039 chr2 33246001 37268445 4022445 * c(LOC100288911, MYADML, RASGRP3, FAM98A, LTBP1, CRIM1, VIT, HEATR5B, STRN, FEZ2) 0.392582177014643 29 0.0936123176182078 1.03202797934544 1240 0.509089632017371 5 3 2 -6.76090419234429 LTS-039 chr2 37268446 37276775 8330 * HEATR5B NA 0 NA 1.486 1 NA NA NA NA NA LTS-039 chr2 37276776 38295020 1018245 * c(CEBPZOS, RMDN2-AS1, CEBPZ, CDC42EP3, RMDN2, CYP1B1, PRKD3, GPATCH11, QPCT, SULT6B1, HEATR5B, NDUFAF7, EIF2AK2) 0.426503024237129 29 0.0536978180657709 1.23867706556547 1106 0.48624146987102 6 3 3 -6.73700878017432 LTS-039 chr2 38295021 39006664 711644 * c(GALM, CYP1B1, CYP1B1-AS1, ATL2, SRSF7, GEMIN6, HNRNPLL) 0.449862977052813 6 0.0366751505336606 1.83250611188414 565 0.914599725744418 10 5 5 -6.89545069077238 LTS-039 chr2 39006665 39008642 1978 * GEMIN6 NA 0 NA 0.819 1 NA NA NA NA NA LTS-039 chr2 39008643 42981344 3972702 * c(SLC8A1-AS1, ARHGEF33, TMEM178A, KCNG3, EML4, CDKL4, LOC375196, LOC388942, C2orf91, MTA3, SLC8A1, SOS1, LOC728730, MORN2, GEMIN6, THUMPD2, MAP4K3, DHX57, PKDCC, COX7A2L) 0.425514816810755 26 0.0494621067080649 1.08989912347928 1744 0.58050854329872 5 3 2 -6.81723586542921 LTS-039 chr2 42981345 43019784 38440 * c(OXER1, HAAO, MTA3) 0.419339199465047 8 0.0407411252386858 0.727532420196926 159 0.227430662649502 4 2 2 -6.79769030934858 LTS-039 chr2 43019785 43449508 429724 * character(0) NA 0 NA 4.411 1 NA NA NA NA NA LTS-039 chr2 43449509 43451594 2086 * ZFP36L2 0.43 1 NA 4.24958964801001 49 2.37103233960277 20 20 0 -5.7644131970809 LTS-039 chr2 43451595 43906086 454492 * c(LINC01126, PLEKHH2, THADA, ZFP36L2, C1GALT1C1L) 0.36842353689804 5 0.0237212984467546 1.5494215904323 385 0.53501747975096 11 7 4 -6.85085023899019 LTS-039 chr2 43906087 47049772 3143686 * c(MIR548AD, LRPPRC, SIX2, PLEKHH2, EPAS1, RHOQ, TMEM247, LINC01118, LINC01121, DYNC2LI1, PIGF, PPM1B, SRBD1, PRKCE, ABCG5, ABCG8, SIX3, SLC3A1, CAMKMT, ATP6V1E2, CRIPT, PREPL, SOCS5) 0.375254025723747 55 0.136872269586714 1.19098035621323 2066 0.750839513461418 6 4 2 -6.75480829450401 LTS-039 chr2 47049773 47081110 31338 * c(LINC01119, LINC01118) NA 0 NA 4.615 1 NA NA NA NA NA LTS-039 chr2 47081111 47133222 52112 * c(LINC01119, MCFD2) 0.399741686274839 3 0.0855628424025289 2.20849896010776 73 0.616636265448326 10 6 4 -6.73436948290918 LTS-039 chr2 47133223 47134886 1664 * MCFD2 NA 0 NA 1.029 1 NA NA NA NA NA LTS-039 chr2 47134887 47387801 252915 * c(C2orf61, TTC7A, CALM2, MCFD2) 0.388934482224823 10 0.0398565483257701 1.32239211865295 275 0.633760159420119 8 5 3 -6.75464833431311 LTS-039 chr2 47387802 47387880 79 * c(C2orf61, CALM2) NA 0 NA 2.718 1 NA NA NA NA NA LTS-039 chr2 47387881 47601028 213148 * c(C2orf61, EPCAM, CALM2) NA 0 NA 2.73918431591966 62 0.988148946011131 14 NA NA -5.76444260814966 LTS-039 chr2 47601029 48872301 1271273 * c(GTF2A1L, STON1, PPP1R21, STON1-GTF2A1L, MSH6, FOXN2, EPCAM, MSH2, KCNK12, MIR559, FBXO11) 0.444528516497525 12 0.0400010416531036 1.33191085218917 899 1.8843693442263 6 3 3 -6.80475550736872 LTS-039 chr2 48872302 48873622 1321 * c(GTF2A1L, STON1-GTF2A1L) NA 0 NA 0.739 1 NA NA NA NA NA LTS-039 chr2 48873623 53978114 5104492 * c(GTF2A1L, FSHR, STON1-GTF2A1L, LHCGR, ASB3, NRXN1) 0.313422707972436 12 0.192950044563275 0.842239137171947 741 0.448230208167009 4 3 1 -6.78635595582295 LTS-039 chr2 53978115 53990572 12458 * ASB3 NA 0 NA 1.076 1 NA NA NA NA NA LTS-039 chr2 53990573 54883191 892619 * c(MIR3682, GPR75, C2orf73, PSME4, ERLEC1, TSPYL6, CHAC2, ASB3, RPL23AP32, SPTBN1, ACYP2) 0.375872098284866 13 0.12372897386772 1.11874832604342 792 0.626733297187016 6 4 2 -6.76762424406562 LTS-039 chr2 54883192 54884957 1766 * SPTBN1 NA 0 NA 2.759 1 NA NA NA NA NA LTS-039 chr2 54884958 54951848 66891 * SPTBN1 0.405366786299259 6 0.0520938256098231 2.79856042878668 118 1.50629366029582 17 10 7 -6.73437683509579 LTS-039 chr2 54951849 55449551 497703 * c(CLHC1, EML6, RTN4) 0.438702072704209 6 0.0384742338022041 1.09643288878169 466 0.439497680220071 6 3 3 -6.78621294253786 LTS-039 chr2 55449552 55464511 14960 * c(CLHC1, MTIF2, RPS27A) NA 0 NA 2.54595732315222 43 1.47554329315231 13 NA NA -5.76441071516921 LTS-039 chr2 55464512 55464517 6 * MTIF2 NA 0 NA 1.296 1 NA NA NA NA NA LTS-039 chr2 55464518 56144926 680409 * c(CFAP36, EFEMP1, PRORSD1P, MTIF2, CCDC88A, PPP4R3B, PNPT1) 0.354367222430272 9 0.192655781122706 1.30508429278851 759 0.680568388987332 6 4 2 -6.7345155231108 LTS-039 chr2 56144927 60679482 4534556 * c(MIR216B, MIR4432, CCDC85A, EFEMP1, LINC01122, MIR216A, MIR217, BCL11A, FANCL, VRK2) 0.354031895641033 7 0.161406319578881 0.981158653077854 316 0.478704726181385 5 3 2 -6.88915386811975 LTS-039 chr2 60679483 60679698 216 * BCL11A NA 0 NA 2.25 1 NA NA NA NA NA LTS-039 chr2 60679699 60686124 6426 * BCL11A NA 0 NA 3.12808350112529 46 2.01372733067783 16 NA NA -5.76441063232363 LTS-039 chr2 60686125 62974593 2288469 * c(SNORA70B, MIR5192, CCT4, B3GNT2, AHSA2, COMMD1, PUS10, TMEM17, EHBP1, LOC339803, C2orf74, LINC01185, PEX13, BCL11A, REL, PAPOLG, XPO1, FAM161A, KIAA1841, USP34) 0.38578062648589 29 0.112997351640791 1.41233381720887 1686 0.850189266646605 8 5 3 -6.76660614653855 LTS-039 chr2 62974594 62991354 16761 * EHBP1 NA 0 NA 1.062 1 NA NA NA NA NA LTS-039 chr2 62991355 64819206 1827852 * c(LOC100132215, DBIL5P2, MIR4434, LINC00309, EHBP1, LGALSL, MDH1, OTX1, WDPCP, VPS54, AFTPH, PELI1, UGP2) 0.435946250451856 6 0.0343627705518632 1.14978969495965 897 0.647801867943113 6 3 3 -6.76613750426768 LTS-039 chr2 64819207 64819362 156 * AFTPH NA 0 NA 2.141 1 NA NA NA NA NA LTS-039 chr2 64819363 64863158 43796 * c(LOC339807, AFTPH, SERTAD2) 0.381720821437806 3 0.0351710107901379 2.11254181375247 109 0.807986322732886 8 5 3 -6.74031903006013 LTS-039 chr2 64863159 66585479 1722321 * c(MIR4778, ACTR2, SPRED2, CEP68, LOC400958, RAB1A, SLC1A4, SERTAD2) 0.393585263943233 11 0.0547523349439837 1.2476924687593 528 0.465584230222606 5 3 2 -6.87680247641929 LTS-039 chr2 66585480 66662289 76810 * MEIS1-AS3 NA 0 NA 4.152 1 NA NA NA NA NA LTS-039 chr2 66662290 66799594 137305 * MEIS1 0.39 1 NA 2.91634564796313 146 2.15619037643771 15 15 0 -5.76441342789561 LTS-039 chr2 67624466 68520787 896322 * c(C1D, WDR92, CNRIP1, ETAA1, PPP3R1, PNO1) 0.405008107035011 2 0.0586898628384835 1.14132629658395 408 0.536638911046891 5 3 2 -6.74105303175897 LTS-039 chr2 68520788 69208220 687433 * c(PROKR1, GKN2, APLF, CNRIP1, BMP10, PLEK, FBXO48, GKN1, ARHGAP25) 0.422620397521423 6 0.0460941066370384 0.8889526193891 578 0.322651767573811 4 2 2 -6.75142220345686 LTS-039 chr2 69208221 69240280 32060 * ANTXR1 NA 0 NA 1.706 1 NA NA NA NA NA LTS-039 chr2 69240281 69784182 543902 * c(SNORA36C, MIR3126, AAK1, GFPT1, NFU1, ANTXR1) 0.400278095357623 12 0.0348438073277148 1.23874387376845 593 0.493627964278258 5 3 2 -6.78352836151643 LTS-039 chr2 69784183 69869928 85746 * AAK1 NA 0 NA 2.7 1 NA NA NA NA NA LTS-039 chr2 69869929 70223890 353962 * c(SNRNP27, ASPRV1, AAK1, ANXA4, PCBP1-AS1, MXD1, GMCL1) 0.329575647074247 11 0.12066098262186 1.53749806361409 488 0.727440555812213 7 5 2 -6.74924989556546 LTS-039 chr2 70223891 70314522 90632 * PCBP1-AS1 NA 0 NA 4.63 1 NA NA NA NA NA LTS-039 chr2 70314523 70330072 15550 * PCBP1 NA 0 NA 3.16975057088988 40 1.08519005897703 17 NA NA -5.76441370818184 LTS-039 chr2 70330073 71887789 1557717 * c(LOC100133985, MPHOSPH10, TEX261, ADD2, CLEC4F, VAX2, ZNF638, FIGLA, PAIP2B, CD207, PCYOX1, ATP6V1B1, C2orf42, NAGK, SNRPG, TGFA, TIA1, OR7E91P, ANKRD53, DYSF, MCEE, FAM136A) 0.357572490996407 27 0.115591899281425 1.22892446229992 2022 1.15814044202369 6 4 2 -6.73360956985285 LTS-039 chr2 71887790 71891369 3580 * DYSF NA 0 NA 2.189 1 NA NA NA NA NA LTS-039 chr2 71891370 71908245 16876 * DYSF NA 0 NA 2.17563074235833 41 0.599588434047808 11 NA NA -5.76441269401087 LTS-039 chr2 71908246 71909598 1353 * DYSF NA 0 NA 1.23 1 NA NA NA NA NA LTS-039 chr2 71909599 73675163 1765565 * c(SMYD5, CCT7, FBXO41, EGR4, EMX1, EXOC6B, RAB11FIP5, NOTO, CYP26B1, SPR, ALMS1, DYSF, PRADC1, SFXN5) 0.309245989285828 6 0.164722089188629 1.05956849448137 1320 0.504892510764158 5 4 1 -6.81655488651128 LTS-039 chr2 73675164 73928269 253106 * c(ALMS1P1, ALMS1, NAT8) 0.385970755019813 8 0.0684809671160013 0.77505225585059 322 0.325456871534167 3 2 1 -6.77162950871959 LTS-039 chr2 73928270 74597969 669700 * c(BOLA3-AS1, STAMBP, MTHFD2, DCTN1, DGUOK, TET3, C2orf78, BOLA3, TPRKB, MOB1A, SLC4A5, ACTG2, DUSP11) 0.386803785895458 27 0.0544146002277764 1.14577384459526 1084 0.544723068197562 5 3 2 -6.82107467211493 LTS-039 chr2 74597970 74598142 173 * DCTN1 NA 0 NA 1.385 1 NA NA NA NA NA LTS-039 chr2 74598143 74666858 68716 * c(DCTN1-AS1, DCTN1, C2orf81, RTKN, WDR54) NA 0 NA 1.60794817755514 267 0.580190059133081 8 NA NA -5.76441163621881 LTS-039 chr2 74666859 74666902 44 * RTKN NA 0 NA 2.308 1 NA NA NA NA NA LTS-039 chr2 74666903 74710773 43871 * c(INO80B-WBP1, MRPL53, WBP1, RTKN, TTC31, MOGS, INO80B, CCDC142) 0.448 1 NA 2.20244733372615 290 1.04319340568891 11 11 0 -5.76442161191849 LTS-039 chr2 74710774 74717145 6372 * TTC31 NA 0 NA 1.345 1 NA NA NA NA NA LTS-039 chr2 74717146 74721047 3902 * TTC31 NA 0 NA 0.960486203028594 71 0.189031261187766 4 NA NA -5.76477160098105 LTS-039 chr2 74721048 74721052 5 * TTC31 NA 0 NA 1.647 1 NA NA NA NA NA LTS-039 chr2 74721053 74735709 14657 * c(LBX2-AS1, TTC31, PCGF1, LBX2) NA 0 NA 2.26212364458971 151 0.883531587714931 12 NA NA -5.76442160016904 LTS-039 chr2 74735710 74741137 5428 * TLX2 NA 0 NA 1.787 1 NA NA NA NA NA LTS-039 chr2 74741138 74900702 159565 * c(SEMA4F, M1AP, DQX1, DOK1, HTRA2, TLX2, AUP1, LOXL3) NA 0 NA 1.44955672850038 524 0.57482246056068 7 NA NA -5.76444781111217 LTS-039 chr2 74900703 75120161 219459 * c(SEMA4F, HK2) 0.359184016074622 2 0.0459619407771256 0.958706612650085 238 0.385890231525489 6 4 2 -6.80086640062197 LTS-039 chr2 75120162 75923437 803276 * c(MIR5000, HK2, POLE4, TACR1, GCFC2, EVA1A, MRPL19) 0.336697686408322 14 0.156419413651353 1.36332259438465 340 0.721424170345651 6 4 2 -6.74775793452131 LTS-039 chr2 75923438 76975383 1051946 * c(GCFC2, LRRTM4) 0.496 1 NA 1.77382050759446 35 1.05775434949025 9 9 0 -5.76448271391348 LTS-039 chr2 76975384 77745348 769965 * LRRTM4 NA 0 NA 1.02095568637903 51 0.42642914129902 5 NA NA -5.7704941676369 LTS-039 chr2 77745349 77745435 87 * LRRTM4 NA 0 NA 0.892 1 NA NA NA NA NA LTS-039 chr2 77745436 80389886 2644451 * c(SNAR-H, MIR4264, REG3G, CTNNA2, REG3A, REG1A, REG1B, REG1CP, LRRTM4) 0.375888729236042 4 0.0653426864053405 0.644136239139825 251 0.31794292399161 3 2 1 -6.88657646708731 LTS-039 chr2 80389887 80529033 139147 * c(CTNNA2, LRRTM1) NA 0 NA 3.446 1 NA NA NA NA NA LTS-039 chr2 80529034 84686600 4157567 * c(CTNNA2, DHFRP3, LRRTM1, FUNDC2P2, SUCLG1) 0.468 1 NA 1.16664925964071 212 0.781197285715088 6 6 0 -5.7850195597915 LTS-039 chr2 84686601 84744879 58279 * DNAH6 NA 0 NA 0.785 1 NA NA NA NA NA LTS-039 chr2 84744880 85108446 363567 * c(TRABD2A, DNAH6) 0.424162265889641 3 0.053507008886687 0.751173222890956 459 0.26007906923033 4 2 2 -6.83536050431584 LTS-039 chr2 85108447 85661602 553156 * c(TGOLN2, SH2D6, RETSAT, KCMF1, CAPG, TCF7L1, ELMOD3, TMSB10) 0.43999903151414 29 0.0488013970566397 1.0867233693952 600 0.529178352091432 6 3 3 -6.77859747454777 LTS-039 chr2 85661603 85661854 252 * SH2D6 NA 0 NA 1.946 1 NA NA NA NA NA LTS-039 chr2 85661855 85848748 186894 * c(PARTICL, USP39, VAMP5, TMEM150A, GGCX, SH2D6, C2orf68, MAT2A, RNF181, VAMP8) 0.427 1 NA 1.67629792740821 446 0.593954882549303 8 8 0 -5.76487217349858 LTS-039 chr2 85848749 85850671 1923 * USP39 NA 0 NA 1.182 1 NA NA NA NA NA LTS-039 chr2 85850672 87011811 1161140 * c(RNF103-CHMP3, MIR4779, GNLY, USP39, IMMT, POLR1A, LOC284950, MRPL35, CHMP3, PTCD3, KDM3A, SFTPB, RMND5A, REEP1, SNORD94, RNF103, ATOH8, ST3GAL5, LOC90784, CD8A) 0.425748264848413 27 0.0911931046526125 1.07915590132588 1514 0.526467292797275 5 3 2 -6.75820448842155 LTS-039 chr2 87011812 87408672 396861 * c(ANAPC1P1, LOC285074, RMND5A, CD8A, CD8B) 0.446313697975076 8 0.0515348356523457 0.679251733020892 230 0.432620960520059 2 1 1 -6.86405067704502 LTS-039 chr2 87408673 87426774 18102 * RMND5A 0.329013062643569 4 0.0880468625221819 0.354957983375938 91 0.456607106086238 4 3 1 -6.8525127887637 LTS-039 chr2 87929222 89246947 1317726 * c(MIR4436A, MIR4780, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, EIF2AK3) 0.42007085660772 20 0.105931693483162 0.867115273315393 658 0.544974170660684 4 2 2 -6.74114177847209 LTS-039 chr2 89246948 89246957 10 * character(0) NA 0 NA 0.504 1 NA NA NA NA NA LTS-039 chr2 89246958 91937761 2690804 * LOC654342 0.329028564523447 20 0.0871805597596161 0.576822019687585 317 0.562191276653899 3 2 1 -7.08601206819554 LTS-039 chr2 91937762 91955470 17709 * character(0) NA 0 NA 0.701020142192159 15 0.196925608385744 3 NA NA -5.76446766734593 LTS-039 chr2 95537183 95542476 5294 * c(TEKT4, LOC442028) 0.309 1 NA 0.698597942683647 43 0.240990892334672 3 3 0 -5.7644277581539 LTS-039 chr2 95542477 96080306 537830 * c(TEKT4, PROM2, KCNIP3, MAL, LOC442028, FAHD2A, MRPS5, ZNF2, ZNF514) 0 2 0 0.979173512618368 564 0.499168364540582 0 0 0 -Inf LTS-039 chr2 96080307 96619774 539468 * c(TRIM43, TRIM43B) 0.347743161793867 34 0.0888250749473027 1.29598768796414 264 1.32076137013033 6 4 2 -6.73711763709764 LTS-039 chr2 96619775 96687319 67545 * FAHD2CP NA 0 NA 1.22505165979039 35 0.454344440472463 6 NA NA -5.76450759918254 LTS-039 chr2 96687320 96687391 72 * FAHD2CP NA 0 NA 0.332 1 NA NA NA NA NA LTS-039 chr2 96687392 96689178 1787 * c(GPAT2, FAHD2CP) 0.491 1 NA 0.604388632615017 33 0.231894642025209 2 2 0 -5.76474616089762 LTS-039 chr2 96689179 96789826 100648 * c(GPAT2, ADRA2B, ASTL) 0.46 1 NA 0.749115991716325 125 0.31743940991588 3 3 0 -5.76602182350878 LTS-039 chr2 96789827 97652006 862180 * c(MIR3127, ARID5A, ITPRIPL1, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, ASTL, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, LMAN2L, FER1L5, NEURL3, CIAO1) 0.450972461585032 35 0.0428048532550326 1.12737363081151 1919 0.452891511930246 6 3 3 -6.89262018906497 LTS-039 chr2 97652007 97757522 105516 * c(FAHD2B, FAM178B) 0.441757751915883 2 0.0261629509039023 0.641507209835117 81 0.296040963652826 2 1 1 -6.86425807577802 LTS-039 chr2 97757523 97779417 21895 * c(FAHD2B, ANKRD36) NA 0 NA 1.515 1 NA NA NA NA NA LTS-039 chr2 97779418 98709553 930136 * c(ACTR1B, COX5B, VWA3B, TMEM131, ANKRD36, ANKRD36B, LINC01125, ZAP70) 0.310972916955448 21 0.136246328041389 1.0692696081391 564 0.778991714825728 4 3 1 -6.76900872350141 LTS-039 chr2 98709554 99136593 427040 * c(CNGA3, VWA3B, INPP4A) 0.405622858296143 5 0.0488344140949802 0.742917218201484 307 0.276744993456442 4 2 2 -6.996637755457 LTS-039 chr2 99136594 99785779 649186 * c(MGAT4A, MITD1, C2orf15, UNC50, KIAA1211L, INPP4A, COA5, MRPL30, LIPT1, TSGA10) 0.402181388573143 5 0.212858403639603 1.04846402586479 782 0.508453976012971 5 3 2 -6.73410016426992 LTS-039 chr2 99785780 99785790 11 * c(MITD1, MRPL30) NA 0 NA 1.626 1 NA NA NA NA NA LTS-039 chr2 99785791 99814086 28296 * c(MITD1, MRPL30) 0.428255694449668 2 0.0558614357137373 1.77073864098067 105 0.907382806386592 11 6 5 -6.73382801550944 LTS-039 chr2 99814087 99858722 44636 * c(LYG2, MRPL30) NA 0 NA 0.735 1 NA NA NA NA NA LTS-039 chr2 99858723 101612514 1753792 * c(TXNDC9, NMS, LYG1, LONRF2, LYG2, AFF3, NPAS2, MRPL30, REV1, PDCL3, CHST10, EIF5B) 0.43757612431203 55 0.110113479879525 1.05662281757074 1266 0.486475245692573 5 3 2 -6.77968561825818 LTS-039 chr2 101612515 101612518 4 * NPAS2 NA 0 NA 1.643 1 NA NA NA NA NA LTS-039 chr2 101612519 101628113 15595 * c(TBC1D8, NPAS2, RPL31) 0.423708300680755 4 0.0930035841603251 1.6775983162618 110 0.678571211559724 9 5 4 -6.73337243856905 LTS-039 chr2 101628114 102851677 1223564 * c(MIR5696, TBC1D8, CREG2, RNF149, IL1R1, CNOT11, RPL31, SNORD89, RFX8, IL1R2, IL1RL2, MAP4K4) 0.462057598953237 17 0.0413966644010047 1.07733813104073 910 0.4158202975013 6 3 3 -7.15404522282305 LTS-039 chr2 102851678 102855603 3926 * IL1RL2 NA 0 NA 0.619 1 NA NA NA NA NA LTS-039 chr2 102855604 105924838 3069235 * c(LOC100287010, LINC01158, MIR4772, GPR45, TMEM182, LINC01102, LINC01114, SLC9A4, POU3F3, MRPS9, SLC9A2, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, TGFBRAP1) 0.436757973064588 20 0.106049690438517 0.829488780552818 1108 0.415529153437047 4 2 2 -6.79029408705749 LTS-039 chr2 105924839 105953739 28901 * TGFBRAP1 NA 0 NA 1.807 1 NA NA NA NA NA LTS-039 chr2 105953740 106710323 756584 * c(FHL2, LOC285000, C2orf49, UXS1, NCK2, C2orf40) 0.453603430287018 12 0.0548905246556243 1.09286845579486 343 0.858942835380863 6 3 3 -6.84719659781625 LTS-039 chr2 106710324 106710414 91 * UXS1 NA 0 NA 0.462 1 NA NA NA NA NA LTS-039 chr2 106710415 108999623 2289209 * c(SULT1C2P1, SULT1C4, PLGLA, RGPD4, SULT1C3, SLC5A7, RGPD3, SULT1C2, RGPD4-AS1, UXS1, ST6GAL2) 0.447761951386376 9 0.0342653047718988 0.710364708155818 563 0.302943800203821 4 2 2 -7.56667023270175 LTS-039 chr2 108999624 110351570 1351947 * c(SH3RF3-AS1, MIR4265, MIR4266, EDAR, SEPT10, CCDC138, SULT1C4, SH3RF3, LIMS1, RANBP2, GCC2) 0.410471523678696 13 0.126021162244019 1.02904403200415 857 0.454375452455849 5 3 2 -6.74008706002036 LTS-039 chr2 110351571 110376562 24992 * c(SEPT10, SOWAHC) 0.49400234169243 2 0.00707106781186548 1.71534341932378 107 0.445830967159566 8 4 4 -15.2384978430826 LTS-039 chr2 110376563 110827494 450932 * SOWAHC NA 0 NA 1.316 1 NA NA NA NA NA LTS-039 chr2 110827495 112523973 1696479 * c(BCL2L11, MIR4267, LOC100507334, LINC01106, LINC00116, NPHP1, MIR4435-2HG, ACOXL, BUB1, MALL) 0.40373628931732 7 0.17659356079508 1.14677543258816 583 0.504630601063817 5 3 2 -6.75126854971337 LTS-039 chr2 112523974 112543007 19034 * ANAPC1 0.259350406372916 3 0.247024290303606 0.544161003113985 105 0.606730650180236 1 1 0 -6.74183816382715 LTS-039 chr2 112543008 112543013 6 * ANAPC1 NA 0 NA 1.098 1 NA NA NA NA NA LTS-039 chr2 112543014 113953897 1410884 * c(MERTK, FBLN7, TTL, CKAP2L, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, ZC3H6, FLJ42351, IL36G, ANAPC1, SLC20A1, RGPD8, POLR1B, CHCHD5, ZC3H8, IL1F10, TMEM87B) 0.41195390928267 49 0.115112445026591 0.994843118063927 1926 0.497897123068352 5 3 2 -6.75319121231521 LTS-039 chr2 113953898 113955009 1112 * PSD4 NA 0 NA 1.972 1 NA NA NA NA NA LTS-039 chr2 113955010 114061802 106793 * c(PSD4, PAX8-AS1, PAX8) 0.378554127504582 6 0.0258824264704838 2.19677951349261 196 0.724392731832652 16 10 6 -6.74670399891578 LTS-039 chr2 114061803 114201773 139971 * CBWD2 NA 0 NA 0.944 1 NA NA NA NA NA LTS-039 chr2 114201774 114475550 273777 * c(RABL2A, RPL23AP7, CBWD2, FOXD4L1, WASH2P, FAM138B, SLC35F5, DDX11L2) 0.335581150809628 2 0.0466690475583121 0.85279570997248 117 0.46288598776133 6 4 2 -6.94519249768642 LTS-039 chr2 114475551 114476646 1096 * SLC35F5 NA 0 NA 1.803 1 NA NA NA NA NA LTS-039 chr2 114476647 114688902 212256 * c(MIR4782, ACTR3, SLC35F5) 0.36772891714452 2 0.0601040764008565 1.8931096090203 135 0.789615262935359 11 7 4 -6.73990783359719 LTS-039 chr2 114688903 114688908 6 * ACTR3 NA 0 NA 1.222 1 NA NA NA NA NA LTS-039 chr2 114688909 120021658 5332750 * c(LOC100499194, ACTR3, C1QL2, EN1, DPP10-AS1, LINC01191, INSIG2, CCDC93, STEAP3, DPP10, MARCO, DDX18) 0.44446159681516 41 0.0819327654164101 0.836412535983281 1042 0.311082165475703 4 2 2 -6.88250455202833 LTS-039 chr2 120021659 121223803 1202145 * c(C2orf76, TMEM37, DBI, CFAP221, INHBB, STEAP3, EPB41L5, PTPN4, RALB, SCTR, TMEM185B, TMEM177, LINC01101) 0.403540332929794 44 0.148057392734508 1.10894514980786 1151 0.550944051249304 5 3 2 -6.73606937120534 LTS-039 chr2 121223804 121554820 331017 * c(GLI2, LINC01101) NA 0 NA 0.905 1 NA NA NA NA NA LTS-039 chr2 121554821 121977425 422605 * c(GLI2, TFCP2L1) 0.318574701507529 3 0.260392652226082 0.816194968004794 235 0.287095700021936 4 3 1 -6.76093234655307 LTS-039 chr2 121977426 122519060 541635 * c(RNU4ATAC, CLASP1, NIFK-AS1, TFCP2L1, TSN, NIFK) 0.386633377363562 12 0.184847767013013 1.21944548666557 536 0.819741811600803 5 3 2 -6.74835322274613 LTS-039 chr2 122519061 128046365 5527305 * c(CNTNAP5, ERCC3, BIN1, GYPC, CYP27C1, TSN) 0.455161851273994 10 0.0340602407507639 0.772038091750003 547 0.336276735717841 4 2 2 -7.58225047633405 LTS-039 chr2 128046366 128046853 488 * ERCC3 NA 0 NA 1.721 1 NA NA NA NA NA LTS-039 chr2 128046854 128284494 237641 * c(MIR4783, MAP3K2, ERCC3, IWS1, PROC) 0.4807852751738 2 0.0190918830920368 1.24356741512701 495 0.695068439289458 6 3 3 -9.33020864250894 LTS-039 chr2 128284495 128317234 32740 * MYO7B NA 0 NA 0.528 1 NA NA NA NA NA LTS-039 chr2 128317235 128432687 115453 * c(GPR17, MYO7B, LIMS2) 0.421900258906032 6 0.0398969505935813 0.769241810187097 405 0.284540546948658 4 2 2 -6.78066073473024 LTS-039 chr2 128432688 128458575 25888 * LIMS2 NA 0 NA 3.04 1 NA NA NA NA NA LTS-039 chr2 128458576 128463233 4658 * c(WDR33, SFT2D3) NA 0 NA 1.96836062107127 88 0.754515197151454 10 NA NA -5.76441018259738 LTS-039 chr2 128463234 129023121 559888 * c(POLR2D, WDR33, UGGT1, SAP130, AMMECR1L, HS6ST1) 0.459596668128462 9 0.0199749843554382 1.00178481477923 895 0.460641116004493 4 2 2 -7.80364310139733 LTS-039 chr2 129023122 130738413 1715292 * c(RAB6C-AS1, LOC389033, RAB6C, HS6ST1) 0.380048879377916 2 0.126572113832392 0.641531808601808 132 0.362923022456564 3 2 1 -6.81804224454267 LTS-039 chr2 130738414 130951621 213208 * c(TUBA3E, MED15P9, FAR2P1, SMPD4, POTEF, MZT2B, RAB6C, CCDC74B) 0.224691139141348 2 0.13930003589375 1.03498358339372 319 0.940455383076004 6 5 1 -6.74332789799931 LTS-039 chr2 130951622 130952619 998 * TUBA3E NA 0 NA 0.453 1 NA NA NA NA NA LTS-039 chr2 130952620 130988332 35713 * TUBA3E NA 0 NA 0.593648314630687 53 0.29077288530275 2 NA NA -5.7675834481417 LTS-039 chr2 130988333 130988345 13 * character(0) NA 0 NA 0.948 1 NA NA NA NA NA LTS-039 chr2 130988346 131132995 144650 * c(PTPN18, CCDC115, IMP4) 0.458704847640152 9 0.0310917102206431 1.33674507363069 242 0.516498459737175 6 3 3 -7.18565793752541 LTS-039 chr2 131132996 131296646 163651 * c(FAR2P2, POTEI, CFC1B) NA 0 NA 0.117 1 NA NA NA NA NA LTS-039 chr2 131296647 131688521 391875 * c(CYP4F30P, AMER3, GPR148, ARHGEF4, CFC1, POTEJ) 0.445115571994733 6 0.0399182497946324 0.616857731879226 300 0.306100424788567 2 1 1 -6.86647515315451 LTS-039 chr2 131688522 131688587 66 * ARHGEF4 0.358 1 NA 1.068 1 NA NA NA NA NA LTS-039 chr2 131688588 135722207 4033620 * c(CCNT2-AS1, MIR663B, MIR3679, MIR4784, TUBA3D, LYPD1, ACMSD, FAM168B, LOC150776, WTH3DI, GPR39, C2orf27A, NCKAP5, LINC01120, NOC2LP2, C2orf27B, MGAT5, LOC440910, POTEE, ARHGEF4, PLEKHB2, ANKRD30BL, MZT2A, TMEM163, CCNT2, CCDC74A) 0.358482844432608 38 0.102987535325555 0.968852684978343 1572 0.479522391278629 5 3 2 -6.96987612306537 LTS-039 chr2 135722208 136623890 901683 * c(LOC100507600, RAB3GAP1, UBXN4, R3HDM1, LCT, MIR128-1, MCM6, MAP3K19, ZRANB3) 0 1 NA 0.73937908338468 998 0.329925124650809 3 3 0 -5.77187663393448 LTS-039 chr2 136623891 136624093 203 * MCM6 NA 0 NA 1.012 1 NA NA NA NA NA LTS-039 chr2 136624094 136956829 332736 * c(DARS, MCM6, CXCR4) 0.289050283311815 2 0.350724963468528 1.17992147431593 161 0.56562122899467 5 4 1 -6.74712361287003 LTS-039 chr2 137639685 148730367 11090683 * c(ZEB2-AS1, NXPH2, HNMT, SPOPL, TEX41, ORC4, LRP1B, ARHGAP15, YY1P2, PABPC1P2, GTDC1, THSD7B, KYNU, ACVR2A, ZEB2) 0.434338993335232 28 0.0434326700238061 0.722111621505569 1701 0.3907344288544 3 2 1 -7.80251771773842 LTS-039 chr2 148730368 148731111 744 * ORC4 NA 0 NA 0.851988492918765 6 0.123050667071197 4 NA NA -5.76447129851408 LTS-039 chr2 148731112 149270710 539599 * c(ORC4, MBD5) 0.323 1 NA 0.478737464984041 145 0.155685299716745 2 2 0 -5.90341617588601 LTS-039 chr2 149270711 149449434 178724 * c(EPC2, MBD5) 0.372027792116095 3 0.0586202467866976 0.651318080221412 130 0.267011125284399 3 2 1 -6.74480262762733 LTS-039 chr2 149449435 149449542 108 * EPC2 NA 0 NA 0.757 1 NA NA NA NA NA LTS-039 chr2 149449543 152333516 2883974 * c(MIR4773-1, MIR4773-2, LYPD6, LYPD6B, EPC2, MMADHC, RBM43, KIF5C, RND3, RIF1, TNFAIP6, NMI) 0.319022254366313 19 0.0646324742304223 0.908592750465136 1017 0.479954431557821 4 3 1 -6.80110600313521 LTS-039 chr2 152333517 152670921 337405 * c(ARL5A, NEB, RIF1) 0.375717818300324 26 0.048189816990091 0.62976103826379 933 0.220396235125977 3 2 1 -6.79954521849183 LTS-039 chr2 152670922 152671541 620 * ARL5A NA 0 NA 1.967 1 NA NA NA NA NA LTS-039 chr2 152671542 154335345 1663804 * c(STAM2, FMNL2, ARL6IP6, ARL5A, PRPF40A, RPRM, CACNB4) 0.375990690715375 9 0.0603945361767105 0.888610887624802 954 0.441540745424388 3 2 1 -6.98054048929657 LTS-039 chr2 154335346 154800900 465555 * GALNT13 NA 0 NA 0.282 1 NA NA NA NA NA LTS-039 chr2 154800901 159195262 4394362 * c(LOC100144595, GALNT5, GALNT13, ACVR1C, CCDC148, UPP2, GPD2, KCNJ3, NR4A2, CCDC148-AS1, ERMN, ACVR1, CYTIP) 0.36055791900306 9 0.049859246328484 0.600041896205226 1100 0.26202109569201 3 2 1 -7.70450401239548 LTS-039 chr2 159195263 159195289 27 * CCDC148 NA 0 NA 0.8 1 NA NA NA NA NA LTS-039 chr2 159195290 162276804 3081515 * c(TANK, LY75-CD302, MIR4785, PSMD14, TBR1, CCDC148, WDSUB1, PLA2R1, BAZ2B, ITGB6, LY75, RBMS1, MARCH7, PKP4, TANC1, DAPL1, CD302) 0.353925819147513 38 0.137172939615404 0.771563339035417 1828 0.372331583793112 3 2 1 -6.82953002525378 LTS-039 chr2 162276805 163134131 857327 * c(TBR1, DPP4, FAP, GCG, AHCTF1P1, SLC4A10, IFIH1) 0.297939545446191 5 0.162408435741497 0.566591820462728 665 0.337155013112823 3 2 1 -7.07778447940844 LTS-039 chr2 163134132 163217384 83253 * c(GCA, IFIH1) 0.347463890184281 2 0.0261629509039022 0.965646094060085 129 0.573137341785064 6 4 2 -6.79116373996411 LTS-039 chr2 163217385 163217389 5 * GCA NA 0 NA 0.602 1 NA NA NA NA NA LTS-039 chr2 163217390 165539171 2321782 * c(GCA, GRB14, FIGN, KCNH7) 0.377042172161605 8 0.0566239159467345 0.545126792555524 484 0.215315912675827 2 1 1 -7.24973617555493 LTS-039 chr2 165539172 165539174 3 * character(0) NA 0 NA 0.906 1 NA NA NA NA NA LTS-039 chr2 165539175 165544333 5159 * c(SNORA70F, COBLL1) 0.418370553440218 2 0.0947523086789973 1.07096415713527 74 0.578753267539072 7 4 3 -6.73402753875398 LTS-039 chr2 165544334 166544168 999835 * c(SLC38A11, COBLL1, SCN2A, SCN3A, CSRNP3) 0.409238980805125 11 0.0714044816520644 0.62724704183669 943 0.327762984893162 2 1 1 -6.93851782558806 LTS-039 chr2 166544169 166799852 255684 * c(LOC100506124, TTC21B-AS1, GALNT3, TTC21B, CSRNP3) NA 0 NA 0.88959236217284 249 0.311620276598216 4 NA NA -5.76441914772238 LTS-039 chr2 166799853 166802055 2203 * c(TTC21B-AS1, TTC21B) NA 0 NA 0.594 1 NA NA NA NA NA LTS-039 chr2 166802056 168726111 1924056 * c(TTC21B-AS1, XIRP2, SCN1A, SCN7A, SCN9A, TTC21B, B3GALT1) 0.384919481554498 27 0.123418104385169 0.55788511750447 969 0.284143407649501 2 1 1 -6.84969866303418 LTS-039 chr2 168726112 170387895 1661784 * c(MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, BBS5, CERS6, STK39, LRP2, SPC25, G6PC2, FASTKD1, ABCB11, B3GALT1) 0.296616390789205 20 0.15249075899525 0.678443410920284 1357 0.385599515653762 3 2 1 -6.88790538637856 LTS-039 chr2 170387896 170387901 6 * FASTKD1 NA 0 NA 1.152 1 NA NA NA NA NA LTS-039 chr2 170387902 170885994 498093 * c(PHOSPHO2-KLHL23, CCDC173, UBR3, KLHL23, METTL5, PHOSPHO2, SSB, FASTKD1, PPIG) 0.345941516964363 28 0.108637667763731 0.879417218552112 711 0.439156093889656 3 2 1 -6.83411679682041 LTS-039 chr2 170885995 170897383 11389 * UBR3 NA 0 NA 0.495 1 NA NA NA NA NA LTS-039 chr2 170897384 171717509 820126 * c(NA, UBR3, MYO3B, GAD1, SP5, LINC01124) 0.34498325796156 27 0.0854692927313664 0.699564300254436 623 0.403229880216371 3 2 1 -6.78950348254341 LTS-039 chr2 171717510 175263208 3545699 * c(SP9, RAPGEF4, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, LINC01305, OLA1, MLK7-AS1, ITGA6, PDK1, ZAK, SP3, SCRN3, METTL8, CYBRD1, DCAF17, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, CIR1, TLK1) 0.370260256850446 35 0.0837629006745335 0.903981137055369 2396 0.460011525011086 4 2 2 -7.03202446304616 LTS-039 chr2 175263209 175264633 1425 * SCRN3 NA 0 NA 0.774 1 NA NA NA NA NA LTS-039 chr2 175264634 176804397 1539764 * c(MIR933, CHN1, CHRNA1, ATF2, GPR155, ATP5G3, WIPF1, SCRN3, LNPK) 0.393816860744227 13 0.0665684532970308 0.726002679133886 881 0.372559915064916 3 2 1 -6.80471038788712 LTS-039 chr2 176804398 176805651 1254 * LNPK NA 0 NA 1.522 1 NA NA NA NA NA LTS-039 chr2 176805652 178372815 1567164 * c(LOC100130691, MIR1246, MIR3128, HOXD-AS2, MTX2, HNRNPA3, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, NFE2L2, LNPK, AGPS) 0.387917902899831 13 0.0381010801381314 1.13618086625891 897 0.5822225709925 5 3 2 -6.89021645395515 LTS-039 chr2 178372816 178378523 5708 * AGPS NA 0 NA 0.885 1 NA NA NA NA NA LTS-039 chr2 178378524 179391146 1012623 * c(MIR548N, TTN-AS1, OSBPL6, RBM45, TTC30B, DFNB59, PDE11A, FKBP7, PLEKHA3, TTN, AGPS, PRKRA, TTC30A) 0.325694051396211 20 0.103431785300875 0.793173823019786 988 0.431311783078435 4 3 1 -6.82155572481843 LTS-039 chr2 179391147 179391245 99 * c(MIR548N, TTN-AS1, TTN) NA 0 NA 0.689 1 NA NA NA NA NA LTS-039 chr2 179391246 179641863 250618 * c(MIR548N, TTN-AS1, TTN) 0.313988607163963 17 0.157095957000434 0.471079158268248 2878 0.19299752296968 2 1 1 -7.10407748412493 LTS-039 chr2 179641864 179641962 99 * TTN NA 0 NA 0.552 1 NA NA NA NA NA LTS-039 chr2 179641963 183387367 3745405 * c(MIR1258, MIR4437, UBE2E3, ZNF385B, PPP1R1C, CCDC141, ITGA4, CERKL, NEUROD1, PDE1A, CWC22, SSFA2, TTN, SESTD1) 0.350300957141662 21 0.0975087786035796 0.668131012851306 1548 0.322909001173069 3 2 1 -6.84343181605109 LTS-039 chr2 183387368 183582612 195245 * c(PDE1A, DNAJC10) NA 0 NA 1.643 1 NA NA NA NA NA LTS-039 chr2 183582613 184026407 443795 * c(NCKAP1, NUP35, DUSP19, FRZB, DNAJC10) 0.31776964641458 16 0.112233220720664 0.947520496820848 614 0.494501860594916 4 3 1 -6.75642947476422 LTS-039 chr2 184026408 184125961 99554 * NUP35 NA 0 NA 0.645 1 NA NA NA NA NA LTS-039 chr2 184125962 185803907 1677946 * ZNF804A 0.34818583773493 4 0.0417412665516193 0.50298955846353 124 0.231724769367727 2 1 1 -8.5190683879401 LTS-039 chr2 185803908 186671949 868042 * c(FSIP2, ZNF804A) 0.410038580127345 3 0.044933283877322 0.834582832535268 457 0.379526042567854 4 2 2 -6.8730346275592 LTS-039 chr2 186671950 187626426 954477 * c(FAM171B, ITGAV, FSIP2, ZC3H15) 0.382548794588312 12 0.125930596566185 1.06419117775467 462 0.671940937490211 5 3 2 -6.75576223536102 LTS-039 chr2 187626427 189870246 2243820 * c(MIR1245A, MIR3606, MIR1245B, CALCRL, DIRC1, COL3A1, ZSWIM2, FAM171B, GULP1, MIR561, TFPI) 0.390873113030476 10 0.144141327252881 0.804006381323246 789 0.377808227871083 4 2 2 -6.87793438383111 LTS-039 chr2 189870247 189933587 63341 * c(COL3A1, COL5A2) 0 1 NA 0.758380705330209 295 0.285094303448248 3 3 0 -5.76633416439979 LTS-039 chr2 189933588 190044680 111093 * c(MIR3129, COL5A2) 0 2 0 0.956393419369311 103 0.358627953647838 0 0 0 -Inf LTS-039 chr2 190044681 190306141 261461 * character(0) NA 0 NA 6.73 1 NA NA NA NA NA LTS-039 chr2 190306142 190530855 224714 * c(SLC40A1, ASNSD1, WDR75) 0.175 1 NA 4.79261899077546 215 1.90185709369159 20 20 0 -5.76651314671359 LTS-039 chr2 190530856 190640411 109556 * c(OSGEPL1-AS1, ANKAR, ASNSD1, OSGEPL1, ORMDL1) 0.136093165598081 6 0.0726636084983398 2.94850697055427 274 1.04297824130159 17 15 2 -6.73387830051747 LTS-039 chr2 190640412 190640502 91 * ORMDL1 NA 0 NA 3.9 1 NA NA NA NA NA LTS-039 chr2 190640503 190643257 2755 * ORMDL1 0.156 1 NA 5.75333758960647 2 0.686600684532137 20 20 0 -5.76502917340993 LTS-039 chr2 190643258 190656734 13477 * c(PMS1, ORMDL1) NA 0 NA 5.94382570371091 37 6.41645829250993 20 NA NA -5.76445040754367 LTS-039 chr2 190656735 190660471 3737 * PMS1 NA 0 NA 1.932 1 NA NA NA NA NA LTS-039 chr2 190660472 190742420 81949 * PMS1 NA 0 NA 1.78958739680676 115 1.2032912174234 9 NA NA -5.7644103457803 LTS-039 chr2 190742421 190788030 45610 * character(0) NA 0 NA 1.174 1 NA NA NA NA NA LTS-039 chr2 190788031 191064753 276723 * c(MSTN, C2orf88) 0.342 1 NA 0.847212308732504 69 0.284319689519126 4 4 0 -5.76978962676834 LTS-039 chr2 191064754 191365373 300620 * c(HIBCH, INPP1, MFSD6, C2orf88) 0.430832326868305 11 0.0546522893141058 0.940812432871931 355 0.369114520865552 4 2 2 -6.73683340012683 LTS-039 chr2 191365374 191896330 530957 * c(NEMP2, GLS, NAB1, MFSD6, STAT1, STAT4) 0.371776240596126 3 0.0268886593194975 1.49474397099958 684 0.964708122847961 11 7 4 -6.77871325024913 LTS-039 chr2 191896331 191897733 1403 * STAT4 NA 0 NA 1.02 1 NA NA NA NA NA LTS-039 chr2 191897734 192290075 392342 * c(MYO1B, STAT4) 0.484 1 NA 0.934882491675436 280 0.331946044866495 4 4 0 -5.76917978489736 LTS-039 chr2 192290076 192543201 253126 * c(MYO1B, NABP1) NA 0 NA 3.35 1 NA NA NA NA NA LTS-039 chr2 192543202 192700400 157199 * c(NABP1, SDPR) 0.490142324774824 2 0.015556349186104 2.23144700142108 120 0.979674812565552 12 6 6 -10.8320311963625 LTS-039 chr2 192700401 192700418 18 * SDPR NA 0 NA 0.966 1 NA NA NA NA NA LTS-039 chr2 192700419 196922943 4222525 * c(TMEFF2, DNAH7, SLC39A10, PCGEM1, SDPR) 0.354217761817662 5 0.207161289820275 0.778886267329684 694 0.368317539955773 3 2 1 -6.88730127952289 LTS-039 chr2 196922944 196933268 10325 * DNAH7 NA 0 NA 2.225 1 NA NA NA NA NA LTS-039 chr2 196933269 198288699 1355431 * c(LOC100130452, SF3B1, CCDC150, C2orf66, DNAH7, HECW2, PGAP1, ANKRD44, STK17B, GTF3C3) 0.423311482178255 15 0.0422135162285843 1.10286458959921 1336 0.479630001993477 6 3 3 -6.80812417957328 LTS-039 chr2 198288700 198299587 10888 * SF3B1 NA 0 NA 2.429 1 NA NA NA NA NA LTS-039 chr2 198299588 198381530 81943 * c(HSPE1-MOB4, SF3B1, MOB4, HSPD1, HSPE1, COQ10B) 0.415949688716355 3 0.0461771949487335 1.70880094285357 162 0.797311467148215 7 4 3 -6.74040591479081 LTS-039 chr2 198381531 198388227 6697 * c(HSPE1-MOB4, MOB4) NA 0 NA 0.723 1 NA NA NA NA NA LTS-039 chr2 198388228 200246597 1858370 * c(HSPE1-MOB4, RFTN2, SATB2, MOB4, PLCL1, BOLL, MARS2) 0.384446494738568 5 0.209055495024647 0.900486362678602 596 0.53515568549283 4 2 2 -6.76262366485171 LTS-039 chr2 200246598 200262578 15981 * SATB2 NA 0 NA 1.974 1 NA NA NA NA NA LTS-039 chr2 200262579 201248764 986186 * c(TYW5, SATB2-AS1, C2orf69, SATB2, SPATS2L, FTCDNL1, C2orf47) 0.438440865636908 7 0.0505168524450245 1.51150223645115 332 0.617665095680393 8 4 4 -6.75372200335235 LTS-039 chr2 201248765 201253909 5145 * SPATS2L NA 0 NA 0.733 1 NA NA NA NA NA LTS-039 chr2 201253910 202082614 828705 * c(LOC100507140, CLK1, KCTD18, SGO2, SPATS2L, FAM126B, AOX1, AOX2P, NDUFB3, ORC2, PPIL3, NIF3L1, CFLAR-AS1, CASP10, CFLAR, BZW1) 0.350208440396834 13 0.0979901878918339 1.23898702704554 1191 0.606672929640994 6 4 2 -6.73455696659228 LTS-039 chr2 202082615 202153198 70584 * c(ALS2CR12, CASP8, CASP10) 0.491 1 NA 1.85670151485539 173 0.688371481843727 9 9 0 -5.76451542013801 LTS-039 chr2 202153199 202687649 534451 * c(ALS2CR12, ALS2CR11, STRADB, ALS2, MPP4, CDK15, TMEM237, TRAK2) 0.444635507661408 5 0.0289516838888518 1.10862977955822 1060 0.536228266443962 6 3 3 -6.88560919933697 LTS-039 chr2 202687650 202688339 690 * CDK15 NA 0 NA 1.652 1 NA NA NA NA NA LTS-039 chr2 202688340 203242281 553942 * c(SNORD11B, KIAA2012, NOP58, CDK15, BMPR2, SNORD11, SNORD70, SUMO1, FZD7) 0.393947697745534 15 0.0598276890825008 1.54898786781151 450 0.749352054817291 8 5 3 -6.74824790886472 LTS-039 chr2 203242282 203329534 87253 * BMPR2 NA 0 NA 1.005 1 NA NA NA NA NA LTS-039 chr2 203329535 206480440 3150906 * c(ABI2, PARD3B, ICA1L, CTLA4, FAM117B, ICOS, WDR12, CYP20A1, RAPH1, NBEAL1, BMPR2, CARF, CD28) 0.384098719884811 32 0.0872476949968196 1.11805545212058 1910 0.664448539978271 5 3 2 -6.78183710064511 LTS-039 chr2 206480441 206660234 179794 * c(PARD3B, NRP2) 0.392076580432839 3 0.0623244200400881 1.85540699719416 247 0.720125918915235 8 5 3 -6.74542445838739 LTS-039 chr2 206660235 207018457 358223 * c(GCSHP3, NDUFS1, INO80D, NRP2) 0.317 1 NA 1.29862815424319 494 0.567583692650286 6 6 0 -5.76527679091156 LTS-039 chr2 207018458 207023678 5221 * NDUFS1 NA 0 NA 2.707 1 NA NA NA NA NA LTS-039 chr2 207023679 207040690 17012 * c(EEF1B2, SNORD51, GPR1, NDUFS1, SNORA41) NA 0 NA 2.1940354961407 54 1.18155861676421 11 NA NA -5.76441249200932 LTS-039 chr2 207040691 207974845 934155 * c(MIR3130-1, MIR3130-2, MIR2355, CPO, MDH1B, LOC200726, FASTKD2, GPR1, DYTN, ZDBF2, KLF7, ADAM23) 0.33961728398431 15 0.147330370579993 0.999295659824518 976 0.507867659678969 4 3 1 -6.80958655166213 LTS-039 chr2 207974846 207988430 13585 * KLF7 NA 0 NA 1.749 1 NA NA NA NA NA LTS-039 chr2 207988431 208032019 43589 * KLF7 NA 0 NA 2.83845292451725 45 1.75809832696375 15 NA NA -5.76441166290961 LTS-039 chr2 208032020 208134076 102057 * character(0) NA 0 NA 1.688 1 NA NA NA NA NA LTS-039 chr2 208134077 208866669 732593 * c(MIR4775, CREB1, METTL21A, CCNYL1, PLEKHM3, FZD5) 0.398749228091828 3 0.052880368127816 1.31472417830376 640 0.766911378556014 5 3 2 -6.77876365870124 LTS-039 chr2 208866670 208986258 119589 * c(LOC100507443, PLEKHM3) NA 0 NA 0.967 1 NA NA NA NA NA LTS-039 chr2 208986259 211420498 2434240 * c(LOC100507443, IDH1-AS1, LANCL1, CPS1, CRYGA, CRYGB, CRYGC, CRYGD, KANSL1L, PIKFYVE, UNC80, ACADL, IDH1, C2orf80, MAP2, MYL1, PTH2R, RPE) 0.136958044084129 6 0.23677872933747 0.932040770548747 1733 0.528155970343251 4 4 0 -6.76176449701824 LTS-039 chr2 211420499 211420954 456 * CPS1 NA 0 NA 0.721 1 NA NA NA NA NA LTS-039 chr2 211420955 216966173 5545219 * c(LOC100130451, MIR548F2, MIR4776-1, MIR4776-2, VWC2L-IT1, CPS1, ERBB4, IKZF2, FN1, ABCA12, CPS1-IT1, VWC2L, ATIC, MREG, PECR, BARD1, LINC00607, SPAG16, TMEM169) 0.428268519101817 63 0.0883518312371017 0.794117090862496 1964 0.455588792813691 4 2 2 -6.94150155502603 LTS-039 chr2 216966174 216966472 299 * TMEM169 NA 0 NA 4.92 1 NA NA NA NA NA LTS-039 chr2 216966473 216992470 25998 * c(XRCC5, TMEM169) 0.469546282725946 3 0.045785732857882 1.62549375007354 78 0.80308667472833 8 4 4 -7.13664610582161 LTS-039 chr2 216992471 216995499 3029 * XRCC5 NA 0 NA 0.908 1 NA NA NA NA NA LTS-039 chr2 216995500 217347740 352241 * c(PKI55, SMARCAL1, MARCH4, XRCC5) 0.433111884762594 4 0.0129967944765879 0.82264795538677 285 0.311068547971248 4 2 2 -6.76787666440773 LTS-039 chr2 217347741 217347755 15 * SMARCAL1 NA 0 NA 1.283 1 NA NA NA NA NA LTS-039 chr2 217347756 217368299 20544 * c(SMARCAL1, RPL37A) NA 0 NA 2.09098294708186 69 0.937522711972686 11 NA NA -5.76442288345353 LTS-039 chr2 217368300 217443596 75297 * character(0) NA 0 NA 0.733 1 NA NA NA NA NA LTS-039 chr2 217443597 218867721 1424125 * c(IGFBP2, IGFBP5, TNP1, TNS1, DIRC3) 0.28115133132307 10 0.204406566539445 0.99248588539459 603 0.645700280552418 4 3 1 -6.76029330601177 LTS-039 chr2 218867722 218924289 56568 * c(RUFY4, CXCR2P1) NA 0 NA 0.675 1 NA NA NA NA NA LTS-039 chr2 218924290 219082092 157803 * c(ARPC2, RUFY4, CXCR1, CXCR2, CXCR2P1) 0.459 1 NA 0.681945754406743 190 0.377269136216764 3 3 0 -5.76558768071807 LTS-039 chr2 219082093 219082137 45 * ARPC2 NA 0 NA 1.813 1 NA NA NA NA NA LTS-039 chr2 219082138 219131209 49072 * c(ARPC2, AAMP, GPBAR1) NA 0 NA 1.27346492645927 156 2.87475917411177 6 NA NA -5.7644111018844 LTS-039 chr2 219131210 219270273 139064 * c(AAMP, PNKD, CATIP, MIR26B, CTDSP1, TMBIM1, SLC11A1) 0.346262431165445 8 0.041286455752116 2.53003176958787 515 1.10199727867458 12 8 4 -6.73426534864317 LTS-039 chr2 219270274 219414684 144411 * c(USP37, CTDSP1, VIL1) NA 0 NA 1.371719187858 311 0.621363445211011 7 NA NA -5.76484043444986 LTS-039 chr2 219414685 219418246 3562 * USP37 NA 0 NA 0.707 1 NA NA NA NA NA LTS-039 chr2 219418247 219545309 127063 * c(STK36, USP37, BCS1L, RNF25, ZNF142, PLCD4, CNOT9) 0.45814855283082 14 0.0267011338607661 0.903367299273642 548 0.464218587143249 4 2 2 -7.30850848010319 LTS-039 chr2 219545310 219553423 8114 * STK36 0.404 1 NA 0.868345857981407 21 0.299568936338612 4 4 0 -5.76444840405 LTS-039 chr2 219553424 219689441 136018 * c(CYP27A1, STK36, PRKAG3, TTLL4) 0.291550944067756 7 0.169044795415721 0.772470057028893 360 0.364251638395726 4 3 1 -6.74643776052397 LTS-039 chr2 219689442 219691630 2189 * PRKAG3 NA 0 NA 2.012 1 NA NA NA NA NA LTS-039 chr2 219691631 219758677 67047 * c(PRKAG3, WNT6, WNT10A) 0 1 NA 1.41573768280221 160 0.552961457452211 7 7 0 -5.76442972888137 LTS-039 chr2 219758678 219824272 65595 * character(0) NA 0 NA 0.918 1 NA NA NA NA NA LTS-039 chr2 219824273 219894454 70182 * c(LOC100129175, CRYBA2, LINC00608, CFAP65, MIR375, FEV, CDK5R2) 0 1 NA 0.762219578375971 293 0.272532853692991 3 3 0 -5.76712429888162 LTS-039 chr2 219894455 219903258 8804 * CFAP65 0.426 1 NA 0.723548900483232 71 0.423241636060265 3 3 0 -5.76441879723152 LTS-039 chr2 219903259 220012541 109283 * c(MIR3131, CFAP65, IHH, NHEJ1) 0.461093321616475 5 0.0347807417977248 0.69099524385257 132 0.865255465639412 4 2 2 -7.1652448843402 LTS-039 chr2 220012542 220022253 9712 * NHEJ1 NA 0 NA 1.417 1 NA NA NA NA NA LTS-039 chr2 220022254 220108514 86261 * c(ABCB6, ZFAND2B, SLC23A3, CNPPD1, ANKZF1, ATG9A, FAM134A, GLB1L, NHEJ1) 0.45740044586359 21 0.0266139061394602 1.27738782868768 747 0.53618200803565 6 3 3 -7.28351995782341 LTS-039 chr2 220108515 220117543 9029 * c(TUBA4A, GLB1L, STK16) NA 0 NA 1.99175182162766 116 0.558563551446474 10 NA NA -5.76441144517347 LTS-039 chr2 220117544 220166523 48980 * c(DNAJB2, MIR153-1, PTPRN, TUBA4A, TUBA4B) 0.476203627436027 2 0.0254558441227157 1.14657758352627 225 0.53096624380792 6 3 3 -8.21650411586439 LTS-039 chr2 220166524 220166839 316 * PTPRN NA 0 NA 0.471 1 NA NA NA NA NA LTS-039 chr2 220166840 220249252 82413 * c(DNPEP, RESP18, PTPRN) NA 0 NA 0.660945010030764 129 0.31442431957055 3 NA NA -5.76710042208666 LTS-039 chr2 220249253 220250112 860 * DNPEP NA 0 NA 1.14 1 NA NA NA NA NA LTS-039 chr2 220250113 220264232 14120 * DNPEP 0.492 1 NA 1.69052592500559 41 0.596931293795354 8 8 0 -5.76446171561046 LTS-039 chr2 220264233 220396730 132498 * c(SPEG, DES, DNPEP, GMPPA, ASIC4) 0.471979168171583 6 0.0343884670589817 0.797479400208035 544 0.303391867258314 4 2 2 -7.50365443415052 LTS-039 chr2 220396731 225875345 5478615 * c(MIR4268, MIR3132, FARSB, MIR4439, STK11IP, MOGAT1, AP1S3, SGPP2, TMEM198, CCDC140, EPHA4, ACSL3, OBSL1, KCNE4, INHA, PAX3, SERPINE2, ASIC4, DOCK10, WDFY1, SLC4A3, MRPL44, SCG2, CHPF, FAM124B, CUL3) 0.458143633812857 59 0.0327966923251312 1.04832298068479 2366 0.80922753809962 4 2 2 -7.25497274841401 LTS-039 chr2 225875346 225906988 31643 * DOCK10 NA 0 NA 0.531 1 NA NA NA NA NA LTS-039 chr2 225906989 226594070 687082 * c(DOCK10, NYAP2) 0.451515583861704 4 0.0444259683818672 0.647641756415507 115 0.260737064748452 2 1 1 -7.09297046790751 LTS-039 chr2 227523407 227664498 141092 * c(MIR5702, IRS1) NA 0 NA 1.45362577859401 103 0.26851376911308 7 NA NA -5.76464709018874 LTS-039 chr2 227664499 227729310 64812 * RHBDD1 NA 0 NA 0.534 1 NA NA NA NA NA LTS-039 chr2 227729311 228758456 1029146 * c(MIR5703, COL4A3, COL4A4, DAW1, AGFG1, C2orf83, MFF, CCL20, LOC654841, TM4SF20, SLC19A3, RHBDD1) 0.424497317496952 36 0.0891971020598372 0.821473237339225 1339 0.442107953229219 4 2 2 -6.7571190843304 LTS-039 chr2 228758457 228758540 84 * DAW1 NA 0 NA 0.608 1 NA NA NA NA NA LTS-039 chr2 228758541 230578976 1820436 * c(DAW1, PID1, SPHKAP, DNER) 0.369792518961835 8 0.164031301455371 0.611859563096579 426 0.568486624671388 3 2 1 -6.80868650053664 LTS-039 chr2 230578977 231589848 1010872 * c(SP140, FBXO36, SLC16A14, LOC151475, SP110, CAB39, SP100, DNER, TRIP12, SP140L) 0.431790120396584 21 0.0927336431476116 0.83795353302707 1009 0.400161775985047 4 2 2 -6.74772674912015 LTS-039 chr2 231589849 231589890 42 * CAB39 NA 0 NA 0.933 1 NA NA NA NA NA LTS-039 chr2 231589891 232572381 982491 * c(MIR4777, NMUR1, SPATA3, LINC00471, LOC151484, C2orf57, C2orf72, SNORD82, HTR2B, SPATA3-AS1, NCL, CAB39, PSMD1, SNORD20, SNORA75, ARMC9, ITM2C, GPR55, B3GNT7) 0.451714595792023 16 0.0406347552389987 1.01373606413769 999 0.463590311344363 4 2 2 -6.93421096808426 LTS-039 chr2 232572382 232572426 45 * character(0) NA 0 NA 2.963 1 NA NA NA NA NA LTS-039 chr2 232572427 232578272 5846 * PTMA 0.442 1 NA 2.4503955116905 46 0.898782920758591 13 13 0 -5.76441315823273 LTS-039 chr2 232578273 232597203 18931 * PDE6D NA 0 NA 0.847 1 NA NA NA NA NA LTS-039 chr2 232597204 233037490 440287 * c(MIR1471, DIS3L2, NPPC, PDE6D, COPS7B) 0.354 1 NA 1.02771520970648 222 0.496104595030511 5 5 0 -5.76633569917069 LTS-039 chr2 233037491 233074972 37482 * DIS3L2 NA 0 NA 0.676 1 NA NA NA NA NA LTS-039 chr2 233074973 233408414 333442 * c(CHRND, CHRNG, DIS3L2, ALPI, ALPP, ALPPL2, ECEL1P2, PRSS56, ECEL1) 0.432590508218657 25 0.0990410184384901 0.730909181306602 617 0.324906814480613 4 2 2 -6.80727653206647 LTS-039 chr2 233408415 233409071 657 * CHRNG NA 0 NA 1.696 1 NA NA NA NA NA LTS-039 chr2 233409072 233429134 20063 * c(CHRNG, TIGD1, EIF4E2) 0.487 1 NA 1.7967030581265 78 1.17817876726145 9 9 0 -5.76441015351312 LTS-039 chr2 233429135 233431499 2365 * EIF4E2 NA 0 NA 1.146 1 NA NA NA NA NA LTS-039 chr2 233431500 234471530 1040031 * c(NGEF, GIGYF2, INPP5D, KCNJ13, C2orf82, NEU2, ATG16L1, USP40, SAG, SCARNA6, SCARNA5, EFHD1, DGKD, EIF4E2) 0.448278585278463 46 0.0515577814778514 0.937927153597024 1529 0.364197522918576 4 2 2 -6.81400425727772 LTS-039 chr2 234471531 234473954 2424 * USP40 NA 0 NA 0.638 1 NA NA NA NA NA LTS-039 chr2 234473955 234731641 257687 * c(LOC100286922, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40) 0.427174791967724 26 0.102320469416136 0.634981245889933 457 0.306548725551237 2 1 1 -6.78613613826316 LTS-039 chr2 234731642 234732183 542 * character(0) NA 0 NA 1.073 1 NA NA NA NA NA LTS-039 chr2 234732184 234978746 246563 * c(MSL3P1, HJURP, SPP2, TRPM8) 0.447536465425415 7 0.0224181049281921 1.02962964706375 368 0.446439213601892 4 2 2 -7.06918871775742 LTS-039 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 3.484 1 NA NA NA NA NA LTS-039 chr2 235401661 235404162 2502 * ARL4C NA 0 NA 3.13076558034336 56 1.88176272285585 16 NA NA -5.76441037343081 LTS-039 chr2 235404163 237489950 2085788 * c(ARL4C, AGAP1, SH3BP4, GBX2, ASB18, ACKR3, IQCA1) 0.433169549609151 20 0.0604710457030557 0.999078022929727 632 0.41149689841317 4 2 2 -6.82805889199502 LTS-039 chr2 237489951 238005567 515617 * c(COPS8, ACKR3) NA 0 NA 2.03687386828356 77 0.633203760024226 10 NA NA -5.76515584537712 LTS-039 chr2 238005568 238006175 608 * COPS8 NA 0 NA 0.873 1 NA NA NA NA NA LTS-039 chr2 238006176 238483127 476952 * c(COPS8, COL6A3, PRLH, RAB17, MLPH) 0.41739173358855 16 0.116716679756294 0.924192764745618 588 0.472571262484976 4 2 2 -6.74245295306557 LTS-039 chr2 238483128 238483164 37 * RAB17 0.498 1 NA 1.789 1 NA NA NA NA NA LTS-039 chr2 238483165 238657996 174832 * c(RAB17, LRRFIP1) 0.433055303727161 13 0.0276755469220736 1.49461652049776 172 0.783887791545092 8 4 4 -6.73839319838517 LTS-039 chr2 238657997 238659737 1741 * LRRFIP1 NA 0 NA 0.675 1 NA NA NA NA NA LTS-039 chr2 238659738 240896922 2237185 * c(MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, RAMP1, TWIST2, UBE2F, LOC150935, LINC01107, LOC151174, TRAF3IP1, ESPNL, RBM44, KLHL30, FLJ43879, NDUFA10, SCLY, ASB1, HES6, LOC643387, ILKAP, MGC16025, PER2, LRRFIP1, HDAC4) 0.436221696274526 94 0.0873047319481854 1.07267874521459 1915 0.496026889047162 5 3 2 -6.7991979175978 LTS-039 chr2 240896923 240896949 27 * NDUFA10 NA 0 NA 0.698 1 NA NA NA NA NA LTS-039 chr2 240896950 241496827 599878 * c(PP14571, OTOS, COPS9, OR6B3, GPC1, OR6B2, MIR149, NDUFA10, ANKMY1, PRR21) 0.415305513601336 34 0.115468220659083 0.831814661474606 629 0.446632850547014 4 2 2 -6.75238154224079 LTS-039 chr2 241496828 241499740 2913 * c(DUSP28, ANKMY1) NA 0 NA 2.87 1 NA NA NA NA NA LTS-039 chr2 241499741 241508519 8779 * c(DUSP28, ANKMY1, RNPEPL1) 0.462758365244805 6 0.0332906393249915 2.4168805263926 73 1.04755436155407 12 6 6 -7.24360442031811 LTS-039 chr2 241508520 241511798 3279 * RNPEPL1 NA 0 NA 0.865 1 NA NA NA NA NA LTS-039 chr2 241511799 242839472 1327674 * c(BOK-AS1, STK25, CAPN10, NEU4, MTERF4, DTYMK, AGXT, LOC200772, PASK, ATG4B, SNED1, RTP5, GPR35, HDLBP, AQP12A, SEPT2, ANO7, THAP4, PDCD1, KIF1A, PPP1R7, RNPEPL1, GAL3ST2, AQP12B, BOK, D2HGDH, C2orf54, ING5, FARP2) 0.435644843965039 108 0.098927528708192 0.952241440492923 3067 0.511578087584893 4 2 2 -6.74762833392301 LTS-039 chr2 242839473 243037218 197746 * LOC728323 NA 0 NA 1.23870356598394 23 0.324851550164485 6 NA NA -5.7645511429202 LTS-039 chr3 239351 418089 178739 * CHL1 0.459 1 NA 0.573287096067704 69 0.148964908298963 2 2 0 -5.79294895749788 LTS-039 chr3 418090 3143390 2725301 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, IL5RA) 0.434394207336276 4 0.0531507290636733 0.49473189481927 518 0.19536937607057 2 1 1 -6.94075584624217 LTS-039 chr3 3143391 4748101 1604711 * c(SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.403726151709629 21 0.0704937011708273 0.649736983988595 607 0.331619011404074 3 2 1 -6.92943450873273 LTS-039 chr3 4748102 4752034 3933 * ITPR1 NA 0 NA 1.128 1 NA NA NA NA NA LTS-039 chr3 4752035 4942387 190353 * c(EGOT, BHLHE40-AS1, ITPR1) 0.412766498363063 3 0.0164620776331543 1.09242785913872 200 0.507155436685637 5 3 2 -6.80421367491843 LTS-039 chr3 4942388 5020809 78422 * BHLHE40-AS1 NA 0 NA 1.904 1 NA NA NA NA NA LTS-039 chr3 5020810 5164341 143532 * c(BHLHE40-AS1, ARL8B, BHLHE40) NA 0 NA 2.01298201870915 93 0.911930226092107 10 NA NA -5.76444867076482 LTS-039 chr3 5164342 5170045 5704 * ARL8B NA 0 NA 0.839 1 NA NA NA NA NA LTS-039 chr3 5170046 5292054 122009 * c(MIR4790, ARL8B, EDEM1) 0.247491581838223 4 0.18462755301778 0.987281573076727 253 0.478271498648492 5 4 1 -6.73520727971692 LTS-039 chr3 6814394 7783195 968802 * GRM7 0.438796544697877 9 0.0365186405977976 0.455341940775569 180 0.187403339123366 2 1 1 -7.12820069628878 LTS-039 chr3 8299330 8757460 458131 * c(LMCD1-AS1, LINC00312, LMCD1, SSUH2) 0.419943432706413 10 0.144595835194364 0.91071965569725 192 0.479465780265807 4 2 2 -6.73687640980141 LTS-039 chr3 8757461 8775441 17981 * SSUH2 NA 0 NA 0.288 1 NA NA NA NA NA LTS-039 chr3 8775442 8940742 165301 * c(OXTR, SSUH2, RAD18, CAV3) 0.385 1 NA 0.474631961820515 228 0.188085815667163 2 2 0 -5.79926100723159 LTS-039 chr3 8940743 8944062 3320 * RAD18 NA 0 NA 0.571 1 NA NA NA NA NA LTS-039 chr3 8944063 9122932 178870 * c(RAD18, SRGAP3) 0.295781839320977 6 0.23062408084731 0.693267026892829 298 0.334319833781667 4 3 1 -6.7933057425002 LTS-039 chr3 9122933 9860438 737506 * c(SRGAP3-AS3, ARPC4-TTLL3, ARPC4, TADA3, CPNE9, THUMPD3, TTLL3, LHFPL4, THUMPD3-AS1, OGG1, SETD5, MTMR14, BRPF1, CAMK1, SRGAP3) 0.325467978332014 6 0.173347819907453 0.979558852664555 1051 0.42993319490581 4 3 1 -6.76959684820483 LTS-039 chr3 9860439 9883803 23365 * c(ARPC4-TTLL3, TTLL3, RPUSD3) NA 0 NA 0.721087013799951 160 0.549393141438863 3 NA NA -5.76441889265551 LTS-039 chr3 9883804 9991200 107397 * c(ARPC4-TTLL3, PRRT3-AS1, IL17RE, RPUSD3, PRRT3, CIDEC, CRELD1, JAGN1, IL17RC) 0.343298784072733 12 0.0635230213578057 1.21362817187871 478 0.462166618456325 6 4 2 -6.75321684658774 LTS-039 chr3 9991201 10331925 340725 * c(GHRLOS, PRRT3-AS1, FANCD2OS, CIDECP, FANCD2, PRRT3, IRAK2, LOC401052, GHRL, EMC3, BRK1, CIDEC, VHL, LINC00852, TATDN2) 0.336516121706513 18 0.114616096920121 0.850349139083844 687 0.502361335819038 4 3 1 -6.80337897853462 LTS-039 chr3 10331926 10334399 2474 * c(GHRLOS, GHRL) NA 0 NA 0.713 1 NA NA NA NA NA LTS-039 chr3 10334400 11079955 745556 * c(MIR885, GHRLOS, SLC6A1-AS1, LINC00606, ATP2B2, GHRL, SEC13, SLC6A1, SLC6A11) 0.375872396878113 21 0.0574165232564385 0.639535739934158 623 0.263504377549036 3 2 1 -6.80902558838729 LTS-039 chr3 11079956 12875835 1795880 * c(MKRN2OS, ATG7, TAMM41, CAND2, MKRN2, HRH1, PPARG, TMEM40, RAF1, SLC6A1, SYN2, TIMP4, TSEN2, VGLL4) 0.33491406875346 15 0.117560723923953 0.832220273785076 1194 0.360715460093952 4 3 1 -6.83223276204615 LTS-039 chr3 12875836 12882967 7132 * c(CAND2, RPL32) NA 0 NA 1.40073832432467 65 0.432558731561392 7 NA NA -5.76442207942301 LTS-039 chr3 12882968 12892119 9152 * RPL32 NA 0 NA 0.639 1 NA NA NA NA NA LTS-039 chr3 12892120 14176852 1284733 * c(FGD5P1, CHCHD4, FBLN2, NUP210, LINC00620, TPRXL, WNT7A, TMEM43, HDAC11, IQSEC1) 0.366168302855103 29 0.0837087226417022 0.716269949395482 884 0.3144846557191 3 2 1 -6.73552406648447 LTS-039 chr3 14176853 14177362 510 * TMEM43 NA 0 NA 1.388 1 NA NA NA NA NA LTS-039 chr3 14177363 14186720 9358 * c(XPC, TMEM43) 0.362060906568851 5 0.0616984602725222 1.84608301337568 58 0.841493434641331 14 9 5 -6.73518003953909 LTS-039 chr3 14186721 14186726 6 * XPC NA 0 NA 0.939 1 NA NA NA NA NA LTS-039 chr3 14186727 15272134 1085408 * c(FGD5-AS1, FGD5, CAPN7, LSM3, COL6A4P1, CCDC174, RBSN, MRPS25, SLC6A6, NR2C2, XPC, GRIP2, C3orf20) 0.397954776954643 21 0.10488295063228 0.889412954085367 1315 0.378277025621792 4 2 2 -6.79096278674242 LTS-039 chr3 15272135 15273578 1444 * CAPN7 NA 0 NA 1.638 1 NA NA NA NA NA LTS-039 chr3 15273579 15491924 218346 * c(SH3BP5-AS1, METTL6, CAPN7, COLQ, EAF1, SH3BP5) 0.441955683231056 10 0.0465055552237221 1.14621673382616 360 0.539314553438245 6 3 3 -6.77155465681231 LTS-039 chr3 15491925 16346293 854369 * c(MIR4270, GALNT15, ANKRD28, HACL1, DPH3, BTD, MIR563, COLQ, OXNAD1) 0.384315908221 26 0.0594102296293777 0.813127650907685 773 0.351193317511602 3 2 1 -6.83599609431882 LTS-039 chr3 16346294 20053837 3707544 * c(MIR3714, MIR4791, KCNH8, PP2D1, EFHB, DAZL, RFTN1, PLCL2, LOC339862, RAB5A, SATB1, OXNAD1, TBC1D5) 0.368925166004377 21 0.0593644113365351 0.599953432522195 1096 0.361025400615171 3 2 1 -7.19138842847505 LTS-039 chr3 20053838 20081505 27668 * character(0) NA 0 NA 0.964 1 NA NA NA NA NA LTS-039 chr3 20081506 23632423 3550918 * c(MIR548AC, SGO1-AS1, SGO1, VENTXP7, UBE2E2, ZNF385D, KAT2B) 0.422929046785006 5 0.0799531112590373 0.747151878713042 379 0.349684780302546 3 2 1 -7.01678604957033 LTS-039 chr3 23632424 25706517 2074094 * c(MIR548AC, MIR4792, MIR4442, LINC00691, NKIRAS1, RARB, RPL15, THRB-AS1, THRB, TOP2B, UBE2E1, NR1D2) 0.385071512459505 6 0.0694475821513367 1.0017172346062 706 0.534068106129368 5 3 2 -6.81272858406619 LTS-039 chr3 25706518 25760577 54060 * NGLY1 NA 0 NA 0.478 1 NA NA NA NA NA LTS-039 chr3 25760578 32510214 6749637 * c(OSBPL10-AS1, CMTM7, OSBPL10, LRRC3B, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, GPD1L, RBMS3, LINC00692, GADL1, ZNF860, OXSM, NGLY1, AZI2, LINC00693, TGFBR2, EOMES, SLC4A7) 0.35907563057267 44 0.0952566883780929 0.705056633272453 1981 0.72396250388923 3 2 1 -6.74321791128461 LTS-039 chr3 32510215 32522837 12623 * CMTM6 NA 0 NA 1.543 1 NA NA NA NA NA LTS-039 chr3 32522838 32567725 44888 * c(DYNC1LI1, CMTM6) 0.44599856728378 2 0.00636396103067893 1.25242132694611 94 0.550681541082374 6 3 3 -9.03861776317135 LTS-039 chr3 32567726 33909048 1341323 * c(PDCD6IP, CRTAP, CCR4, TRIM71, CLASP2, FBXL2, CNOT10, SUSD5, GLB1, DYNC1LI1, TMPPE, UBP1) 0.381278918201807 20 0.0677724326815775 0.745988150561254 1356 0.328666680223595 3 2 1 -6.76333963123915 LTS-039 chr3 33909049 33909073 25 * PDCD6IP NA 0 NA 0.578 1 NA NA NA NA NA LTS-039 chr3 33909074 36899588 2990515 * c(PDCD6IP, ARPP21, MIR128-2, STAC, DCLK3, TRANK1) 0.274065495532244 7 0.187877366284246 0.555192704452951 666 0.248980676013533 2 2 0 -7.00412443456954 LTS-039 chr3 36899589 36900147 559 * TRANK1 NA 0 NA 0.84 1 NA NA NA NA NA LTS-039 chr3 36900148 37315155 415008 * c(GOLGA4, MLH1, LRRFIP2, EPM2AIP1, TRANK1) 0.374877415128075 5 0.0499919993598976 0.91148855189999 406 0.414485603418528 3 2 1 -6.82427591966562 LTS-039 chr3 37315156 37318147 2992 * GOLGA4 NA 0 NA 0.589 1 NA NA NA NA NA LTS-039 chr3 37318148 37323671 5524 * GOLGA4 NA 0 NA 0.433405587495914 40 0.215856309043415 2 NA NA -5.76733041711193 LTS-039 chr3 37323672 38127881 804210 * c(CTDSPL, GOLGA4, C3orf35, ITGA9, MIR26A1, VILL, PLCD1, DLEC1) 0.368206609698021 20 0.0645977635265462 0.952013833139131 888 0.381909888646257 5 3 2 -6.98907539804584 LTS-039 chr3 38127882 38173081 45200 * c(ACAA1, DLEC1) 0.333 1 NA 0.542283769263826 187 0.208600327838174 2 2 0 -5.76469637264077 LTS-039 chr3 38173082 38297016 123935 * c(ACAA1, MYD88, OXSR1) NA 0 NA 0.89921736530699 249 0.375461410696758 4 NA NA -5.76444711403614 LTS-039 chr3 38297017 38307243 10227 * character(0) NA 0 NA 0.406 1 NA NA NA NA NA LTS-039 chr3 38307244 38988381 681138 * c(ACVR2B-AS1, SCN11A, SCN5A, SCN10A, ACVR2B, SLC22A14, SLC22A13, EXOG, XYLB) 0.366622234682888 32 0.133229334020509 0.586870808592985 1085 0.27960981972762 3 2 1 -6.92090274149133 LTS-039 chr3 38988382 38991584 3203 * SCN11A NA 0 NA 0.7 1 NA NA NA NA NA LTS-039 chr3 38991585 39162693 171109 * c(SCN11A, TTC21A, WDR48, GORASP1) 0.429935180006525 4 0.0180623918681884 0.802481536215017 305 0.328514715093231 4 2 2 -6.74464834448004 LTS-039 chr3 39162694 39166461 3768 * TTC21A NA 0 NA 2.167 1 NA NA NA NA NA LTS-039 chr3 39166462 39225310 58849 * c(XIRP1, TTC21A, CSRNP1) 0.313842569958311 11 0.0548598213631798 1.6571808113998 216 0.58097797125127 7 5 2 -6.73688459113839 LTS-039 chr3 39225311 39225424 114 * XIRP1 NA 0 NA 0.521 1 NA NA NA NA NA LTS-039 chr3 39225425 39374987 149563 * c(CCR8, CX3CR1, XIRP1) 0.411537496258989 3 0.077485482511242 0.572343893493274 222 0.176762343769944 2 1 1 -6.78575859303812 LTS-039 chr3 39374988 39424808 49821 * CCR8 NA 0 NA 1.943 1 NA NA NA NA NA LTS-039 chr3 39424809 39454051 29243 * c(RPSA, SLC25A38, SNORA6, SNORA62) NA 0 NA 1.16995817554023 101 1.23650077634468 6 NA NA -5.76446366028566 LTS-039 chr3 39454052 39541383 87332 * MOBP NA 0 NA 0.253 1 NA NA NA NA NA LTS-039 chr3 39541384 40301043 759660 * c(MYRIP, MOBP, EIF1B-AS1) 0.321213203435596 2 0.0106066017177982 0.524505098134647 200 0.204488118795795 4 3 1 -10.9185097274728 LTS-039 chr3 40301044 42701025 2399982 * c(EIF1B, LYZL4, CTNNB1, TRAK1, ZNF620, MYRIP, ENTPD3-AS1, ZNF619, ZNF621, EIF1B-AS1, NKTR, SS18L2, ULK4, VIPR1, CCK, RPL14, SEC22C, ZBTB47, ENTPD3) 0.34669052640125 41 0.114079091092059 0.867029736620849 1585 0.414473933613633 4 3 1 -6.84890034578246 LTS-039 chr3 42701026 42775132 74107 * c(CCDC13-AS1, KLHL40, CCDC13, HHATL, ZBTB47) 0.323134230646571 5 0.0721193455322495 0.603996889640827 224 0.205389356920993 4 3 1 -6.96339604517892 LTS-039 chr3 42775133 42777160 2028 * c(CCDC13-AS1, CCDC13) NA 0 NA 1.205 1 NA NA NA NA NA LTS-039 chr3 42777161 42983640 206480 * c(KRBOX1, CCDC13-AS1, ACKR2, CCDC13, CYP8B1, HIGD1A, ZNF662) 0.245259915705857 8 0.071309686779367 1.23323979679028 423 0.532462868256092 5 4 1 -6.74220812658697 LTS-039 chr3 42983641 42984017 377 * KRBOX1 NA 0 NA 0.658 1 NA NA NA NA NA LTS-039 chr3 42984018 44778594 1794577 * c(KRBOX1, SNRK-AS1, ZNF197, ZNF501, TCAIM, ZNF660, ZNF445, TOPAZ1, MIR138-1, ABHD5, SNRK, ANO10, ZKSCAN7, FAM198A, ZNF35, POMGNT2, ZNF502) 0.367044242200814 22 0.0993300066266494 0.688081391363448 1463 0.262318659907916 3 2 1 -6.7511622271891 LTS-039 chr3 44778595 44790198 11604 * character(0) NA 0 NA 0.312 1 NA NA NA NA NA LTS-039 chr3 44790199 44794483 4285 * KIAA1143 0.295 1 NA 0.409437033088293 101 0.204659831751796 1 1 0 -5.76590205334705 LTS-039 chr3 44794484 45136994 342511 * c(TMEM42, EXOSC7, ZDHHC3, KIF15, KIAA1143, CDCP1, MIR564, TGM4, CLEC3B) 0.350498175963033 21 0.0915235592880975 0.774867271891932 686 0.364306317424863 3 2 1 -6.77471429690337 LTS-039 chr3 45136995 45151690 14696 * CDCP1 NA 0 NA 1.452 1 NA NA NA NA NA LTS-039 chr3 45151691 45731124 579434 * c(LARS2-AS1, SACM1L, LARS2, TMEM158, LIMD1-AS1, CDCP1, LIMD1) 0.344513360256038 6 0.00948156105290682 1.05320027416368 471 0.339138791911049 6 4 2 -7.46595841505624 LTS-039 chr3 45731125 45744891 13767 * SACM1L NA 0 NA 0.339 1 NA NA NA NA NA LTS-039 chr3 45744892 45883676 138785 * c(SACM1L, LZTFL1, SLC6A20) 0.356558586488698 7 0.0893569620492252 0.773961371795772 342 0.400954559644473 3 2 1 -6.75264319107206 LTS-039 chr3 45883677 45896445 12769 * LZTFL1 NA 0 NA 0.536 1 NA NA NA NA NA LTS-039 chr3 45896446 45943456 47011 * c(CCR9, LZTFL1) NA 0 NA 0.319930440616419 39 0.0765202821234234 1 NA NA -5.80381245247203 LTS-039 chr3 45943457 45943543 87 * c(CCR9, LZTFL1) NA 0 NA 0.726 1 NA NA NA NA NA LTS-039 chr3 45943544 46011177 67634 * c(CXCR6, CCR9, LZTFL1, FYCO1) 0.291 1 NA 0.604329960095604 295 0.159732284746286 2 2 0 -5.79107195939703 LTS-039 chr3 46011178 48606840 2595663 * c(NRADDP, LOC100132146, PRSS46, MIR1226, MIR4443, NME6, CSPG5, TREX1, CCR1, CCR3, CCR5, COL7A1, CCDC12, DHX30, SCAP, NBEAL2, KLHL18, ALS2CL, TMIE, PTPN23, XCR1, FBXW12, KIF9-AS1, SETD2, PRSS50, PRSS42, PRSS45, LTF, MAP4, MYL3, SHISA5, TMA7, ZNF589, PFKFB4, PLXNB1, ELP6, PTH1R, KIF9, SPINK8, SMARCC1, TDGF1, CCR2, LRRC2, FYCO1, CCDC51, CAMP, RTP3, LRRC2-AS1, ATRIP, UCN2, CCRL2, CDC25A) 0.364567905111154 77 0.0823164043834642 0.758762533211543 4481 0.345607512733016 3 2 1 -6.79086905787196 LTS-039 chr3 48606841 48624601 17761 * c(MIR711, COL7A1) NA 0 NA 0.457106734202745 262 0.129369504597639 2 NA NA -5.77859560709738 LTS-039 chr3 48624602 48725953 101352 * c(MIR4793, COL7A1, CELSR3, TMEM89, IP6K2, NCKIPSD, SLC26A6, UQCRC1) 0.31917626880144 5 0.193970358560271 0.715045059208471 761 0.273042936835644 3 2 1 -6.77579486587905 LTS-039 chr3 48725954 49055579 329626 * c(ARIH2, WDR6, IP6K2, P4HTM, DALRD3, PRKAR2A, ARIH2OS, SLC25A20) 0 1 NA 0.991823569542961 695 0.443600282861897 5 5 0 -5.77050462168263 LTS-039 chr3 49055580 49081934 26355 * c(NDUFAF3, IMPDH2, MIR191, MIR425, QRICH1, DALRD3) NA 0 NA 1.44450967604121 181 0.618198135904939 7 NA NA -5.76441272692995 LTS-039 chr3 49081935 49083813 1879 * QRICH1 NA 0 NA 0.604 1 NA NA NA NA NA LTS-039 chr3 49083814 49568708 484895 * c(MIR4271, USP19, DAG1, KLHDC8B, LAMB2P1, AMT, GPX1, CCDC36, C3orf62, RHOA, LAMB2, QRICH1, QARS, C3orf84, CCDC71, TCTA, USP4, NICN1) 0.376048105258102 18 0.0444176553250525 0.860925733380408 1265 0.401087248359092 3 2 1 -6.80561764146921 LTS-039 chr3 49568709 49702327 133619 * c(BSN-AS2, DAG1, BSN) 0.362321537125439 4 0.104020831247079 0.522748274105709 357 0.188253464216233 3 2 1 -6.94451012616709 LTS-039 chr3 49702328 49711443 9116 * c(APEH, BSN) NA 0 NA 1.65 1 NA NA NA NA NA LTS-039 chr3 49711444 49829399 117956 * c(GMPPB, APEH, AMIGO3, CDHR4, MST1, RNF123, IP6K1) 0.377607922954209 9 0.0800683735593802 0.856002010005942 610 0.34774731645189 3 2 1 -6.75696797018789 LTS-039 chr3 49829400 49829813 414 * CDHR4 NA 0 NA 0.538 1 NA NA NA NA NA LTS-039 chr3 49829814 49936673 106860 * c(MIR5193, TRAIP, CDHR4, FAM212A, MST1R, UBA7, CAMKV) 0.372690581821615 11 0.0661413087810691 0.631636294774887 508 0.212225553402356 3 2 1 -6.75335778470221 LTS-039 chr3 49936674 49939798 3125 * MST1R NA 0 NA 0.915 1 NA NA NA NA NA LTS-039 chr3 49939799 50335337 395539 * c(RBM5-AS1, RBM6, RBM5, SLC38A3, LSMEM2, NAT6, GNAI2, GNAT1, MST1R, SEMA3F, IFRD2, SEMA3B, HYAL3, MON1A) 0.364467795734871 18 0.073496098335818 0.830486400255669 990 0.35585834111236 3 2 1 -6.78263995157773 LTS-039 chr3 50335338 50335414 77 * c(NAT6, HYAL3) NA 0 NA 1.027 1 NA NA NA NA NA LTS-039 chr3 50335415 50401963 66549 * c(NPRL2, CYB561D2, TMEM115, RASSF1, TUSC2, NAT6, HYAL1, ZMYND10, HYAL3, HYAL2, CACNA2D2) 0.338720104124302 3 0.029022979401387 1.21673224701233 520 0.389066580994077 9 6 3 -6.83731358391999 LTS-039 chr3 50401964 50401996 33 * CACNA2D2 NA 0 NA 0.487 1 NA NA NA NA NA LTS-039 chr3 50401997 51708494 1306498 * c(MIR4787, CISH, DOCK3, RAD54L2, RBM15B, C3orf18, TEX264, HEMK1, MAPKAPK3, MANF, CACNA2D2, DCAF1) 0.361800866133464 17 0.106865638564893 0.773535736530569 1393 0.354759271063399 3 2 1 -6.78117385907531 LTS-039 chr3 51708495 51970422 261928 * c(IQCF4, IQCF1, GRM2, IQCF2, IQCF5, IQCF3, IQCF6, TEX264, RRP9) 0.350289098225852 2 0.127986327394765 0.483038336559135 263 0.194202634736146 2 1 1 -6.9977541320224 LTS-039 chr3 51970423 51970427 5 * RRP9 NA 0 NA 0.662 1 NA NA NA NA NA LTS-039 chr3 51970428 52184079 213652 * c(LINC00696, PARP3, ABHD14A-ACY1, GPR62, DUSP7, ABHD14A, POC1A, PCBP4, RPL29, ABHD14B, RRP9, ACY1) 0.374135592551974 5 0.049504545245866 0.890402778895143 590 0.341332734682563 3 2 1 -6.79025580857038 LTS-039 chr3 52184080 52184972 893 * POC1A NA 0 NA 1.323 1 NA NA NA NA NA LTS-039 chr3 52184973 52324368 139396 * c(TWF2, GLYCTK, PPM1M, ALAS1, POC1A, MIRLET7G, TLR9, WDR82) 0.331999025241324 11 0.0341539296288276 1.25072569338743 419 0.451715944815755 9 6 3 -6.91968378130908 LTS-039 chr3 52324369 52437618 113250 * c(GLYCTK, DNAH1, MIR135A1, BAP1) 0.331717356366537 10 0.133416848844348 0.615679478883192 504 0.262066886883172 3 2 1 -6.80547550967026 LTS-039 chr3 52437619 52507863 70245 * c(NISCH, PHF7, SEMA3G, TNNC1, BAP1) 0.418846305521918 7 0.083267497803622 0.970155348111932 338 0.412598629624373 4 2 2 -6.74691253666857 LTS-039 chr3 52507864 52510381 2518 * NISCH NA 0 NA 0.49 1 NA NA NA NA NA LTS-039 chr3 52510382 52555074 44693 * c(NISCH, STAB1) 0.393198495959948 6 0.0658617238361301 0.614220470614221 409 0.219628395562156 3 2 1 -6.81157061254912 LTS-039 chr3 52555075 52555401 327 * STAB1 NA 0 NA 1.213 1 NA NA NA NA NA LTS-039 chr3 52555402 52745887 190486 * c(SNORD19B, STAB1, GNL3, SPCS1, SMIM4, PBRM1, GLT8D1, NT5DC2, NEK4, SNORD19, SNORD69) 0.383956244067628 17 0.0540638919405985 0.998257115716472 634 0.43846984681026 3 2 1 -6.83414385178467 LTS-039 chr3 52745888 52771444 25557 * NEK4 NA 0 NA 0.433 1 NA NA NA NA NA LTS-039 chr3 52771445 53910633 1139189 * c(TMEM110-MUSTN1, ITIH1, ITIH3, ITIH4, TMEM110, MUSTN1, SFMBT1, CHDH, IL17RB, PRKCD, DCP1A, NEK4, TKT, CACNA1D, RFT1, ACTR8) 0.363462620457055 66 0.0607527297534372 0.753130155265835 1725 0.327917560485862 3 2 1 -6.76331029291818 LTS-039 chr3 53910634 53910715 82 * ACTR8 NA 0 NA 0.947 1 NA NA NA NA NA LTS-039 chr3 53910716 56695127 2784412 * c(MIR3938, CACNA2D3-AS1, FAM208A, ERC2, CCDC66, CACNA2D3, LRTM1, SELENOK, ERC2-IT1, WNT5A, ESRG, ACTR8) 0.340257328380434 12 0.0530696369276855 0.866565583640549 861 0.424355796184199 4 3 1 -7.10582776165103 LTS-039 chr3 56695128 56696380 1253 * FAM208A NA 0 NA 2.618 1 NA NA NA NA NA LTS-039 chr3 56696381 57276972 580592 * c(ARHGEF3-AS1, FAM208A, APPL1, SPATA12, ARHGEF3, IL17RD, HESX1) 0.352220295515929 23 0.0696379400021787 1.13290999915361 566 0.56608812541314 6 4 2 -6.74486037070398 LTS-039 chr3 57276973 57280094 3122 * APPL1 NA 0 NA 0.806 1 NA NA NA NA NA LTS-039 chr3 57280095 57488217 208123 * c(ASB14, DNAH12, APPL1) 0.363130816209324 9 0.0822300296593512 0.699953395753077 474 0.306398204819323 3 2 1 -6.73904657969956 LTS-039 chr3 57488218 57489719 1502 * DNAH12 NA 0 NA 0.893 1 NA NA NA NA NA LTS-039 chr3 57489720 58083561 593842 * c(DNAH12, PDE12, DENND6A, FLNB, ARF4, SLMAP) 0.297338767098462 13 0.132347929182796 0.931443267482512 665 0.515269732686458 4 3 1 -6.73557946995673 LTS-039 chr3 58083562 58104608 21047 * FLNB 0.412 1 NA 1.66608469981093 69 0.557240832377296 8 8 0 -5.76445181844682 LTS-039 chr3 58104609 58410948 306340 * c(RPP14, DNASE1L3, FLNB, PXK, ABHD6) 0.370452344436671 25 0.105596606637398 0.802219976297271 549 0.308851361115666 3 2 1 -6.76083709982335 LTS-039 chr3 58410949 58639539 228591 * c(FAM107A, FAM3D, KCTD6, PDHB, ACOX2) 0.315457656014297 13 0.0442188612733039 1.20683293340258 356 0.501963259735282 7 5 2 -6.75524554159226 LTS-039 chr3 58639540 58641240 1701 * FAM3D NA 0 NA 0.46 1 NA NA NA NA NA LTS-039 chr3 58641241 58923525 282285 * c(FAM3D, C3orf67) NA 0 NA 0.577308028748129 169 0.219307769075293 2 NA NA -5.78916608768489 LTS-039 chr3 58923526 59025208 101683 * C3orf67 NA 0 NA 0.821 1 NA NA NA NA NA LTS-039 chr3 59025209 62321250 3296042 * c(PTPRG-AS1, C3orf67, FHIT, C3orf14, PTPRG) 0.324476859655572 8 0.148136941953817 0.811495545235962 394 0.409534356268475 4 3 1 -6.85577874597026 LTS-039 chr3 62321251 63820869 1499619 * c(SYNPR-AS1, C3orf49, SNTN, SYNPR, LINC00698, FEZF2, THOC7, CADPS) 0.335871334259501 11 0.173414217724761 0.574592652456464 567 0.283167626690498 2 1 1 -6.97702015015895 LTS-039 chr3 63820870 64431095 610226 * c(LINC00994, PSMD6-AS2, PRICKLE2-AS1, PRICKLE2-AS2, PRICKLE2-AS3, C3orf49, PRICKLE2, ATXN7, THOC7, PSMD6) 0.34802124629487 7 0.0615273845341979 1.1717010233952 458 0.545920918017996 6 4 2 -6.74595952255033 LTS-039 chr3 64431096 64507798 76703 * ADAMTS9 NA 0 NA 0.585 1 NA NA NA NA NA LTS-039 chr3 64507799 65607865 1100067 * c(ADAMTS9-AS2, ADAMTS9, MIR548A2, MAGI1) 0.331118007905086 5 0.0402703364773626 0.788301796716413 442 0.28496338595438 4 3 1 -7.24420041575726 LTS-039 chr3 65607866 66023662 415797 * c(MAGI1-AS1, MAGI1) NA 0 NA 1.603 1 NA NA NA NA NA LTS-039 chr3 66023663 66456365 432703 * c(SLC25A26, LRIG1, MAGI1) 0.250358004205115 9 0.0592335302941764 1.63897101100159 234 0.53993972400728 9 7 2 -6.74084599434547 LTS-039 chr3 66456366 66457684 1319 * LRIG1 NA 0 NA 3.881 1 NA NA NA NA NA LTS-039 chr3 66457685 66551450 93766 * LRIG1 NA 0 NA 2.76076180611901 55 0.862778471904864 14 NA NA -5.76445220159663 LTS-039 chr3 66551451 67048636 497186 * character(0) NA 0 NA 0.977 1 NA NA NA NA NA LTS-039 chr3 67048637 69069077 2020441 * c(MIR4272, FAM19A4, EOGT, FAM19A1, TMF1, KBTBD8, SUCLG2) 0.374478643484107 7 0.0680706915465022 0.653575796586643 449 0.334247391558887 3 2 1 -6.81109687452676 LTS-039 chr3 69069078 69139048 69971 * c(MIR3136, ARL6IP5, TMF1, UBA3) 0.485 1 NA 1.21170880181306 288 0.541669521467953 6 6 0 -5.76456815680421 LTS-039 chr3 69139049 69150937 11889 * ARL6IP5 NA 0 NA 0.855 1 NA NA NA NA NA LTS-039 chr3 69150938 71004463 1853526 * c(ARL6IP5, FRMD4B, FOXP1, MITF, LMOD3) 0.421923551809765 4 0.0643292313027289 0.888987865372916 484 0.347089627355418 4 2 2 -6.74425024525686 LTS-039 chr3 71004464 73431708 2427245 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, EBLN2, SHQ1, PROK2, GXYLT2) 0.346241596371298 23 0.0685604087230289 1.17498774105584 874 0.598992173970619 6 4 2 -6.75912804402846 LTS-039 chr3 73431709 75715423 2283715 * c(MIR1324, PDZRN3, CNTN3, FAM86DP) 0.343261163495329 25 0.0815810026905774 0.750155317184645 357 0.306552702955045 3 2 1 -6.84332128729014 LTS-039 chr3 75715424 75715439 16 * character(0) 0.344 1 NA 1.611 1 NA NA NA NA NA LTS-039 chr3 75715440 75790870 75431 * ZNF717 0.343840973963707 186 0.0947196191302714 1.04369032232456 380 0.650967961098618 6 4 2 -6.74472659575611 LTS-039 chr3 75790871 75790893 23 * ZNF717 NA 0 NA 0.323 1 NA NA NA NA NA LTS-039 chr3 75790894 88042460 12251567 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, CADM2, CHMP2B, GBE1, HTR1F, VGLL3, LINC00971, POU1F1, ROBO1, ROBO2) 0.324484080671195 21 0.139181861160823 0.615951101145117 1104 0.316952932991639 3 2 1 -8.02564855128506 LTS-039 chr3 88042461 88202670 160210 * c(C3orf38, HTR1F, ZNF654, CGGBP1) NA 0 NA 0.971910192531421 301 0.478725929725772 4 NA NA -5.76751871169663 LTS-039 chr3 88202671 88205129 2459 * C3orf38 NA 0 NA 0.409 1 NA NA NA NA NA LTS-039 chr3 88205130 90250548 2045419 * c(EPHA3, C3orf38) 0.380995628056443 13 0.0542871047633758 0.568475243373393 238 0.263294782183933 2 1 1 -7.28011199065231 LTS-039 chr3 90250549 90283666 33118 * character(0) NA 0 NA 0.549053649608538 21 0.209835547853211 2 NA NA -5.76492680975065 LTS-039 chr3 93591838 93768268 176431 * c(ARL13B, STX19, PROS1) 0.308 1 NA 0.587690677524658 159 0.268163386061697 2 2 0 -5.77963948177221 LTS-039 chr3 93768269 97596868 3828600 * c(MTHFD2P1, CRYBG3, ARL13B, DHFR2, LINC00879, EPHA6, NSUN3, ARL6) 0.309234761973997 9 0.121040053058665 0.565431532974911 565 0.29685874390512 2 1 1 -7.38591797362868 LTS-039 chr3 97596869 97598475 1607 * CRYBG3 NA 0 NA 0.926 1 NA NA NA NA NA LTS-039 chr3 97598476 97806123 207648 * c(CRYBG3, GABRR3, OR5AC2, MINA) 0.491 1 NA 0.761575002582347 263 0.350437969917882 3 3 0 -5.76914740054254 LTS-039 chr3 97806124 98220400 414277 * c(OR5K1, OR5H1, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, OR5H6, OR5H2, OR5AC2) 0.327497083979183 11 0.110334450236954 0.393658921691945 222 0.297261005716436 1 1 0 -7.10769610317668 LTS-039 chr3 98220401 98225541 5141 * CLDND1 NA 0 NA 0.548 1 NA NA NA NA NA LTS-039 chr3 98225542 99897443 1671902 * c(MIR548G, MIR3921, ST3GAL6-AS1, ST3GAL6, FILIP1L, COL8A1, DCBLD2, CPOX, GPR15, CLDND1, CMSS1) 0.315722323573509 10 0.127334249560403 0.648511512754007 701 0.378408375061507 3 2 1 -6.90370353285148 LTS-039 chr3 99897444 99904467 7024 * CMSS1 NA 0 NA 0.997 1 NA NA NA NA NA LTS-039 chr3 99904468 101390844 1486377 * c(TFG, FAM172BP, ABI3BP, ZBTB11, LNP1, IMPG2, TRMT10C, TMEM45A, TBC1D23, NIT2, PCNP, SENP7, TMEM30CP, ADGRG7, TOMM70) 0.335599070595782 34 0.117947603854008 0.789529772139269 1491 0.459545304547424 3 2 1 -6.83268430902452 LTS-039 chr3 101390845 101445571 54727 * c(ZBTB11-AS1, ZBTB11, PDCL3P4, RPL24, CEP97) 0.304 1 NA 1.48056800481795 88 0.603373119830994 7 7 0 -5.76450581742327 LTS-039 chr3 101445572 101446217 646 * CEP97 NA 0 NA 0.981 1 NA NA NA NA NA LTS-039 chr3 101446218 101541083 94866 * c(CEP97, NXPE3) 0.347 1 NA 0.721728455201113 223 0.305101311908056 3 3 0 -5.76454085063259 LTS-039 chr3 101541084 101579916 38833 * c(NFKBIZ, NXPE3) 0.427142346993587 4 0.0330756708170825 1.58385850602541 147 0.603456941013249 9 5 4 -6.73530849342339 LTS-039 chr3 102153802 107430249 5276448 * c(LINC00882, ZPLD1, ALCAM, DUBR, BBX, MIR548A3, CCDC54, CBLB) 0.343168908510644 15 0.0517447949993408 0.594041513013334 444 0.292464387764645 3 2 1 -7.91292250478651 LTS-039 chr3 107430250 107435410 5161 * BBX NA 0 NA 0.902 1 NA NA NA NA NA LTS-039 chr3 107435411 107941404 505994 * c(LINC00635, LINC00636, IFT57, BBX, CD47) 0.385938407703967 6 0.0493980431461274 0.912326507659659 474 0.425214977273401 5 3 2 -6.88431002231886 LTS-039 chr3 107941405 108047068 105664 * c(HHLA2, IFT57) NA 0 NA 0.333 1 NA NA NA NA NA LTS-039 chr3 108047069 108268924 221856 * c(HHLA2, MYH15, KIAA1524) 0.391906686936814 6 0.0571827479810709 0.588109281718375 322 0.191147583648197 3 2 1 -6.94006424155661 LTS-039 chr3 108268925 108308327 39403 * KIAA1524 0.369164286960192 4 0.0614057543449038 0.975359343952648 131 0.462815985469756 3 2 1 -6.74463152902952 LTS-039 chr3 108308328 108324169 15842 * c(KIAA1524, DZIP3) NA 0 NA 0.332 1 NA NA NA NA NA LTS-039 chr3 108324170 109046955 722786 * c(DPPA2, MORC1, FLJ22763, TRAT1, DPPA4, LINC00488, RETNLB, GUCA1C, DZIP3) 0.382727133732026 14 0.0670129149435448 0.579419978711878 517 0.45860307795595 3 2 1 -6.83636571160849 LTS-039 chr3 109046956 109047641 686 * DPPA4 NA 0 NA 0.436 1 NA NA NA NA NA LTS-039 chr3 109047642 111634722 2587081 * c(PVRL3-AS1, CD96, PLCXD2, NECTIN3, LINC01205, DPPA4, ZBED2, PHLDB2) 0.37638336510064 4 0.0588812364000621 0.466104923375317 574 0.235181379421558 2 1 1 -7.64444988270629 LTS-039 chr3 111634723 111898569 263847 * c(GCSAM, SLC9C1, TAGLN3, TMPRSS7, ABHD10, MIR567, C3orf52, PHLDB2) 0.378915653366447 16 0.0785294000146866 0.655459353674088 585 0.283474778894506 3 2 1 -6.75203627503254 LTS-039 chr3 111898570 111899392 823 * SLC9C1 NA 0 NA 0.413 1 NA NA NA NA NA LTS-039 chr3 111899393 111904687 5295 * SLC9C1 NA 0 NA 0.311925820536244 39 0.237018781606032 1 NA NA -5.7651718781883 LTS-039 chr3 111904688 111918160 13473 * SLC9C1 NA 0 NA 0.743 1 NA NA NA NA NA LTS-039 chr3 111918161 112251651 333491 * c(BTLA, SLC9C1, CD200, ATG3) 0.378929929241797 11 0.0505074251966976 0.541916224832631 254 0.384326287620961 3 2 1 -6.84582314124951 LTS-039 chr3 112251652 112251758 107 * ATG3 NA 0 NA 0.851 1 NA NA NA NA NA LTS-039 chr3 112251759 112324152 72394 * c(CCDC80, SLC35A5, ATG3) 0.338558993198074 2 0.0791959594928933 0.899231069267248 195 0.42305787616751 6 4 2 -6.78495977858902 LTS-039 chr3 112324153 112324258 106 * CCDC80 NA 0 NA 0.537 1 NA NA NA NA NA LTS-039 chr3 112324259 112694016 369758 * c(CD200R1, CCDC80, CD200R1L) 0.358541938620517 8 0.0513487724154281 0.58711342271677 265 0.272777069972536 3 2 1 -6.87662515875905 LTS-039 chr3 112694017 112709745 15729 * character(0) NA 0 NA 3.212 1 NA NA NA NA NA LTS-039 chr3 112709746 113009015 299270 * c(NEPRO, GTPBP8, CFAP44, BOC) 0.373950539191557 5 0.0659795422839534 0.884212636677581 347 0.383900977124585 3 2 1 -6.79130177640471 LTS-039 chr3 113009016 113009113 98 * CFAP44 NA 0 NA 0.917 1 NA NA NA NA NA LTS-039 chr3 113009114 113807280 798167 * c(MIR4446, CFAP44-AS1, SPICE1, USF3, ZDHHC23, ATP6V1A, GRAMD1C, SIDT1, CFAP44, CCDC191, QTRT2, NAA50) 0.350904531670537 10 0.0450393654978003 0.686746867712644 1430 0.326809054665378 3 2 1 -6.85718155156171 LTS-039 chr3 113807281 113847456 40176 * character(0) NA 0 NA 0.357 1 NA NA NA NA NA LTS-039 chr3 113847457 119137321 5289865 * c(ZBTB20-AS1, IGSF11-AS1, MIR4796, IGSF11, C3orf30, DRD3, TIGIT, GAP43, ZBTB20, TUSC7, LSAMP, ARHGAP31, MIR568, UPK1B, ZNF80, B4GALT4) 0.389595288474836 14 0.0361428788602636 0.538843334413665 984 0.288532460713553 2 1 1 -7.43170887470886 LTS-039 chr3 119137322 121265503 2128182 * c(COX17, POLQ, FSTL1, LRRC58, ADPRH, GPR156, RABL3, GSK3B, GTF2E1, HGD, MIR198, NDUFB4, TIMMDC1, PLA1A, TMEM39A, POGLUT1, ARHGAP31, POPDC2, NR1I2, MAATS1, CD80, STXBP5L) 0.373350753315743 46 0.0991227999432978 0.715182952949514 2170 0.352923464470144 3 2 1 -6.73364154495793 LTS-039 chr3 121265504 121289448 23945 * ARGFX NA 0 NA 0.339 1 NA NA NA NA NA LTS-039 chr3 121289449 121366349 76901 * c(HCLS1, ARGFX, FBXO40) 0.408591293709592 6 0.0545077976073149 0.479853618831949 218 0.154401172279997 2 1 1 -6.84973501859169 LTS-039 chr3 121366350 121650607 284258 * c(GOLGB1, HCLS1, EAF2, SLC15A2, IQCB1) NA 0 NA 0.695771652437627 525 0.318216250803657 3 NA NA -5.76522568095764 LTS-039 chr3 121650608 121658146 7539 * SLC15A2 NA 0 NA 1.595 1 NA NA NA NA NA LTS-039 chr3 121658147 121706465 48319 * c(ILDR1, SLC15A2) NA 0 NA 1.33289742894467 76 0.303980167866492 6 NA NA -5.76561943602449 LTS-039 chr3 121706466 122081804 375339 * c(CCDC58, CSTA, ILDR1, CASR, CD86) 0.437 1 NA 0.616374472835868 306 0.329573081729347 3 3 0 -5.80661227364315 LTS-039 chr3 122081805 122087135 5331 * CCDC58 NA 0 NA 1.327 1 NA NA NA NA NA LTS-039 chr3 122087136 122186284 99149 * c(CCDC58, FAM162A, KPNA1, WDR5B) NA 0 NA 1.24001189431506 337 0.575538232082147 6 NA NA -5.76442861281084 LTS-039 chr3 122186285 122215265 28981 * KPNA1 NA 0 NA 0.549 1 NA NA NA NA NA LTS-039 chr3 122215266 123689119 1473854 * c(LOC100129550, MYLK-AS1, PDIA5, ADCY5, DTX3L, PARP15, HACD2, SEC22A, KPNA1, MYLK, SEMA5B, PARP14, ROPN1, CCDC14, HSPBAP1, PARP9, DIRC2) 0.340817285063981 31 0.0862398505793985 0.824878615620764 1932 0.419675273420297 4 3 1 -6.91063462483116 LTS-039 chr3 123689120 123694239 5120 * ROPN1 NA 0 NA 0.056 1 NA NA NA NA NA LTS-039 chr3 123694240 123699253 5014 * ROPN1 NA 0 NA 0.339778072316082 59 0.183722486579107 1 NA NA -5.76449329958555 LTS-039 chr3 123699254 123699425 172 * ROPN1 NA 0 NA 0.953 1 NA NA NA NA NA LTS-039 chr3 123699426 125691617 1992192 * c(FAM86JP, MIR548I1, MIR5002, MIR5092, OSBPL11, ROPN1B, ALG1L, ITGB5, ROPN1, MUC13, HEG1, UMPS, ZNF148, SLC12A8, SNX4, KALRN) 0.304402853720351 29 0.120238566225158 0.755073610362374 1585 0.374237525805379 3 2 1 -6.94271379127107 LTS-039 chr3 125691618 125691689 72 * ROPN1B NA 0 NA 0.423 1 NA NA NA NA NA LTS-039 chr3 125691690 125695981 4292 * ROPN1B NA 0 NA 0.31210605740642 45 0.359373294286685 1 NA NA -5.76467606009033 LTS-039 chr3 125695982 125701058 5077 * ROPN1B NA 0 NA 0.684 1 NA NA NA NA NA LTS-039 chr3 125701059 127410681 1709623 * c(ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, MGLL, TXNRD3, TPRA1, UROC1, ROPN1B, C3orf22, CHST13, NUP210P1, KLF15, CFAP100, MCM2, PODXL2, PLXNA1, SLC41A3, TXNRD3NB, ZXDC, ABTB1, CHCHD6) 0.398125534623087 17 0.0492236791416011 0.685047807519623 1587 0.30871309454785 3 2 1 -6.92337238167955 LTS-039 chr3 127410682 127541203 130522 * MGLL 0.389616114610024 2 0.0410121933088197 1.28495678553264 75 0.358717938329378 8 5 3 -6.77295668522912 LTS-039 chr3 127541204 127557924 16721 * MGLL NA 0 NA 0.953 1 NA NA NA NA NA LTS-039 chr3 127557925 128654222 1096298 * c(DNAJB8, KBTBD12, LINC01565, GATA2, DNAJB8-AS1, ACAD9, SEC61A1, KIAA1257, EEFSEC, RPN1, LOC653712, RAB7A, RUVBL1, LOC90246) 0.321085173775542 17 0.0898919285783179 0.797833045536179 822 0.343015684122177 4 3 1 -6.84225093340417 LTS-039 chr3 128654223 128663880 9658 * KIAA1257 NA 0 NA 1.084 1 NA NA NA NA NA LTS-039 chr3 128663881 128757771 93891 * c(KIAA1257, EFCC1) 0.397363165012109 8 0.047654822870903 1.08131654758059 205 0.502620772251039 5 3 2 -6.75783069487183 LTS-039 chr3 128757772 128758577 806 * EFCC1 NA 0 NA 0.454 1 NA NA NA NA NA LTS-039 chr3 128758578 128848612 90035 * c(ISY1-RAB43, GP9, RAB43, ISY1, EFCC1) NA 0 NA 0.517428490851559 154 0.237186833813818 2 NA NA -5.76503381357382 LTS-039 chr3 128848613 129694652 846040 * c(TMCC1-AS1, ISY1-RAB43, RPL32P3, H1FOO, COPG1, TMCC1, PLXND1, H1FX-AS1, IFT122, HMCES, ISY1, RHO, SNORA7B, TRH, CNBP, MBD4, H1FX, EFCAB12) 0.376113012113307 11 0.0526941431970644 0.95125929315261 1095 0.421535095015035 3 2 1 -6.97066906619283 LTS-039 chr3 129694653 130312047 617395 * c(COL6A6, COL6A5, ALG1L2, COL6A4P2, TRH, FAM86HP) 0.349983130187225 5 0.0919266011554871 0.620567217536404 480 0.254788606476199 3 2 1 -6.86894166110233 LTS-039 chr3 130312048 130313068 1021 * COL6A6 NA 0 NA 1.041 1 NA NA NA NA NA LTS-039 chr3 130313069 133926302 3613234 * c(NPHP3-ACAD11, MIR5704, TOPBP1, MRPL3, CPNE4, NUDT16, COL6A6, NUDT16P1, DNAJC13, NPHP3, ATP2C1, ASTE1, PIK3R4, LOC339874, NPHP3-AS1, ACKR4, RAB6B, ACPP, CDV3, SRPRB, RYK, SLCO2A1, TMEM108, SNORA58, TF, NEK11, UBA5, C3orf36, ACAD11, BFSP2) 0.345349057970017 40 0.120351238102566 0.804750982127899 2761 0.37169491961643 4 3 1 -6.9870247533183 LTS-039 chr3 133926303 133926387 85 * RYK NA 0 NA 1.07 1 NA NA NA NA NA LTS-039 chr3 133926388 134197199 270812 * c(MIR4788, ANAPC13, AMOTL2, RYK) 0.368287095844739 5 0.0448475194408788 1.36853366792059 152 0.474102118117632 6 4 2 -6.79181412526358 LTS-039 chr3 134197200 135971170 1773971 * c(EPHB1, ANAPC13, KY, PCCB, MSL2, PPP2R3A, CEP63) 0.323140725379199 14 0.151747567281404 0.700340464109987 623 0.38088674419207 3 2 1 -6.79420273352333 LTS-039 chr3 135971171 135974655 3485 * PCCB NA 0 NA 0.277 1 NA NA NA NA NA LTS-039 chr3 135974656 136056108 81453 * c(STAG1, PCCB) 0.207 1 NA 0.420676319804272 160 0.163816978716259 1 1 0 -5.82479926636869 LTS-039 chr3 136056109 136056114 6 * c(STAG1, PCCB) NA 0 NA 0.533 1 NA NA NA NA NA LTS-039 chr3 136056115 136665138 609024 * c(STAG1, NCK1, PCCB, SLC35G2) 0 1 NA 0.640228965895479 240 0.323243299841788 3 3 0 -5.80286806815098 LTS-039 chr3 136665139 136667100 1962 * NCK1 NA 0 NA 1.877 1 NA NA NA NA NA LTS-039 chr3 136667101 136714448 47348 * c(NCK1, IL20RB) NA 0 NA 1.32496036622932 75 0.628649837937415 6 NA NA -5.76463650299468 LTS-039 chr3 136714449 136728928 14480 * IL20RB NA 0 NA 0.685 1 NA NA NA NA NA LTS-039 chr3 136728929 139067009 2338081 * c(PISRT1, DZIP1L, MRAS, ARMC8, NME9, PRR23B, PRR23C, FOXL2NB, A4GNT, DBR1, CLDN18, PIK3CB, IL20RB, FAIM, MRPS22, BPESC1, FOXL2, PRR23A, CEP70, ESYT3, SOX14) 0.302959461892032 21 0.168289178555983 0.727823366164152 1561 0.388497774847488 3 2 1 -6.834834944709 LTS-039 chr3 139067010 139280279 213270 * c(NMNAT3, MRPS22, RBP1, RBP2, COPB2) 0.350142078000568 3 0.0654548190229973 0.987575212367766 284 0.465294512930254 6 4 2 -6.76940389096079 LTS-039 chr3 139280280 139292421 12142 * NMNAT3 NA 0 NA 0.663 1 NA NA NA NA NA LTS-039 chr3 139292422 141205932 1913511 * c(ZBTB38, TRIM42, NMNAT3, SLC25A36, RASA2, CLSTN2, SPSB4, PXYLP1) 0.36858396614171 12 0.0442009015402367 0.715538372059811 767 0.334950761367708 3 2 1 -6.73539277134482 LTS-039 chr3 141205933 141205944 12 * RASA2 NA 0 NA 1.362 1 NA NA NA NA NA LTS-039 chr3 141205945 141465194 259250 * c(RASA2, RNF7) NA 0 NA 1.06237912053163 226 0.416423203372224 5 NA NA -5.76448588344568 LTS-039 chr3 141465195 147134518 5669324 * c(LOC100289361, LOC100507389, SLC9A9-AS1, GRK7, C3orf58, U2SURP, GK5, PCOLCE2, SLC9A9, PAQR9, PLSCR5, ATP1B3, PLOD2, PLS1, PLSCR1, XRN1, ATR, PLSCR2, PLSCR4, TFDP2, TRPC1, ZIC1, ZIC4, CHST2, RNF7) 0.343351003807686 59 0.137458391770555 0.779402184384413 2601 0.436613608053401 3 2 1 -6.90322922343447 LTS-039 chr3 148458752 148703750 244999 * c(CPA3, CPB1, AGTR1) 0.381424309632711 6 0.0611143736502851 0.486704804022058 203 0.23857495084288 3 2 1 -7.1004101386939 LTS-039 chr3 148703751 148705383 1633 * character(0) NA 0 NA 0.992 1 NA NA NA NA NA LTS-039 chr3 148705384 149038164 332781 * c(HLTF-AS1, TM4SF18, CP, GYG1, HLTF, HPS3) 0.357183932706967 3 0.0270246800782791 0.764372902348614 523 0.372920116535597 3 2 1 -6.89619428130909 LTS-039 chr3 149038165 149470272 432108 * c(WWTR1-AS1, TM4SF18, WWTR1, TM4SF1, COMMD2, TM4SF4) 0.36077023041212 9 0.0580344725141876 1.08871809406523 413 0.577004530904452 6 4 2 -6.75448101618205 LTS-039 chr3 149470273 149700890 230618 * c(RNF13, ANKUB1, COMMD2, PFN2, LOC646903) 0.367923897931232 6 0.04985345190322 0.638134174587342 229 0.314364488577418 3 2 1 -6.75194535899174 LTS-039 chr3 149700891 150342724 641834 * c(SERP1, SELENOT, EIF2A, TSC22D2) 0.278409350058492 2 0.101823376490863 1.04466045522347 323 0.58691380536988 4 3 1 -6.78206327456867 LTS-039 chr3 150342725 150344882 2158 * SELENOT NA 0 NA 0.483 1 NA NA NA NA NA LTS-039 chr3 150344883 152555787 2210905 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, ERICH6, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY1, SELENOT, P2RY13, GPR87, SUCNR1, TMEM14EP, SIAH2, P2RY12, CLRN1, P2RY14) 0.376419694668247 32 0.0605405006400008 0.638003788913307 1322 0.318541090461699 3 2 1 -6.88818452134163 LTS-039 chr3 152555788 152885476 329689 * c(P2RY1, RAP2B) NA 0 NA 1.07846009650523 110 0.423663518586174 5 NA NA -5.76444764234233 LTS-039 chr3 152885477 156864312 3978836 * c(TIPARP-AS1, LINC00881, ARHGEF26-AS1, LOC100507537, KCNAB1-AS2, KCNAB1-AS1, C3orf79, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, LINC00880, GPR149, LEKR1, MME, CCNL1, RAP2B, PA2G4P4, SSR3, LINC00886, KCNAB1, GMPS, SLC33A1) 0.321628621504234 31 0.124360973029738 0.71870209463268 1581 0.401502672085403 3 2 1 -6.82823488684922 LTS-039 chr3 156864313 156864328 16 * CCNL1 NA 0 NA 1.403 1 NA NA NA NA NA LTS-039 chr3 156864329 156978676 114348 * c(CCNL1, VEPH1) 0.35826058840733 6 0.0296220638488723 1.57863855026089 134 0.777886094566167 6 4 2 -6.74688355310329 LTS-039 chr3 156978677 157363735 385059 * c(PQLC2L, PTX3, VEPH1) 0.354523332431829 7 0.0785396472520484 0.634582941004841 220 0.338489088440001 3 2 1 -6.78586214956299 LTS-039 chr3 157363736 157813715 449980 * character(0) NA 0 NA 1.021 1 NA NA NA NA NA LTS-039 chr3 157813716 157818193 4478 * SHOX2 0.270142857142857 2 0.0707106781186548 1.37360393541375 69 0.823255718891237 12 9 3 -6.73459404966267 LTS-039 chr3 157818194 157820501 2308 * SHOX2 NA 0 NA 0.576 1 NA NA NA NA NA LTS-039 chr3 157820502 160102512 2282011 * c(MIR3919, IQCJ-SCHIP1, SCHIP1, IL12A, C3orf80, MLF1, RSRC1, LXN, IFT80, RARRES1, SHOX2, MFSD1, IQCJ, GFM1) 0.355487366420368 8 0.0819594847644685 0.790193123086271 1001 0.452767226414065 3 2 1 -6.82790324925713 LTS-039 chr3 160102513 160117462 14950 * c(SMC4, IFT80) NA 0 NA 2.005 1 NA NA NA NA NA LTS-039 chr3 160117463 160150312 32850 * c(SMC4, MIR15B, MIR16-2, IFT80) 0.375289559938388 3 0.0413279566395437 1.33848787262317 137 0.445377334942959 11 7 4 -6.75864348838651 LTS-039 chr3 160150313 160254484 104172 * c(SMC4, TRIM59, KPNA4, IFT80, SCARNA7) 0.396433503758962 10 0.0901655267950131 0.693205341123431 330 0.358485719724232 3 2 1 -6.78022733714122 LTS-039 chr3 160254485 161221473 966989 * c(LOC101243545, OTOL1, PPM1L, SPTSSB, KPNA4, NMD3, ARL14, B3GALNT1) 0 1 NA 0.729046799433588 606 0.976432927605202 3 3 0 -5.76478168141098 LTS-039 chr3 161221474 161221788 315 * OTOL1 NA 0 NA 0.547091934934975 7 0.0752370855869567 2 NA NA -5.76444060777145 LTS-039 chr3 163889174 167543422 3654249 * c(PDCD10, WDR49, SLITRK3, SERPINI1, SERPINI2, BCHE, SI, ZBBX) 0.115290166235674 8 0.0600969454892914 1.46591622994773 793 0.763157130549815 9 8 1 -7.05544943433765 LTS-039 chr3 167543423 167726431 183009 * LINC01330 NA 0 NA 3.114 1 NA NA NA NA NA LTS-039 chr3 167726432 168849694 1123263 * c(MECOM, GOLIM4, MIR551B, EGFEM1P) 0.120724693916728 7 0.0294165486305469 2.17142347809064 304 1.0512881339878 11 10 1 -6.73737037141364 LTS-039 chr3 168849695 168851643 1949 * MECOM NA 0 NA 4.089 1 NA NA NA NA NA LTS-039 chr3 168851644 169502508 650865 * c(MECOM, MYNN, TERC, ACTRT3) 0.101 1 NA 5.1111204034484 121 2.25977749273389 20 20 0 -5.77137248046075 LTS-039 chr3 169502509 169854495 351987 * c(LOC100128164, LRRC34, GPR160, LRRIQ4, SAMD7, MYNN, SEC62, LRRC31, PHC3) 0.0712503163037297 2 0.0692964645562817 1.91551122625616 555 0.785654189285569 7 7 0 -6.77940628124426 LTS-039 chr3 169854496 169863158 8663 * PHC3 NA 0 NA 3.376 1 NA NA NA NA NA LTS-039 chr3 169863159 170625685 762527 * c(RPL22L1, CLDN11, PRKCI, EIF5A2, SLC7A14, SKIL, PHC3) 0.116018281143648 6 0.019528611488446 2.68186490763328 711 1.46132444540825 12 11 1 -6.74555912663322 LTS-039 chr3 170625686 170714130 88445 * EIF5A2 NA 0 NA 1.775 1 NA NA NA NA NA LTS-039 chr3 170714131 171965468 1251338 * c(TNIK, TMEM212, PLD1, FNDC3B, SLC2A2, MIR569) 0.151443621796132 8 0.0211047557267483 1.63441890709842 645 0.610903191775276 9 8 1 -6.76644233285064 LTS-039 chr3 171965469 171965556 88 * FNDC3B NA 0 NA 2.498 1 NA NA NA NA NA LTS-039 chr3 171965557 172166286 200730 * c(GHSR, FNDC3B) 0.0946555378592076 8 0.0219768547080137 4.02952003449459 254 2.25413982165344 15 14 1 -6.74250829002175 LTS-039 chr3 172166287 172223313 57027 * TNFSF10 NA 0 NA 9.267 1 NA NA NA NA NA LTS-039 chr3 172223314 172365930 142617 * c(NCEH1, TNFSF10) 0.0631451601651765 6 0.0121435854123346 7.86009493272882 151 3.47436095669335 7 7 0 -6.81225625214364 LTS-039 chr3 172365931 172428569 62639 * NCEH1 NA 0 NA 4.094 1 NA NA NA NA NA LTS-039 chr3 172428570 172523607 95038 * c(ECT2, NCEH1) NA 0 NA 3.22101769627363 96 1.20260628442103 17 NA NA -5.76441119840108 LTS-039 chr3 172523608 174002663 1479056 * c(ECT2, NLGN1, SPATA16) 0.194752476698484 8 0.0415810310461049 1.32953016341078 288 0.465714122787535 7 6 1 -6.78714949010699 LTS-039 chr3 174002664 174002680 17 * character(0) NA 0 NA 2.344 1 NA NA NA NA NA LTS-039 chr3 174002681 178956168 4953488 * c(LINC00578, MIR4789, NAALADL2-AS3, LINC01014, KCNMB2, NAALADL2, PIK3CA, ZMAT3, TBL1XR1) 0.139501828024161 21 0.0444953181057663 1.87628374886016 833 1.02491675552024 10 9 1 -6.74804309076671 LTS-039 chr3 178956169 178976725 20557 * KCNMB3 0.117 1 NA 1.26490842949762 117 0.968096562877136 6 6 0 -5.76441138189167 LTS-039 chr3 178976726 178976777 52 * KCNMB3 0.136 1 NA 2.648 1 NA NA NA NA NA LTS-039 chr3 178976778 179371199 394422 * c(KCNMB3, NDUFB5, ZNF639, MFN1, MRPL47, GNB4, ACTL6A, USP13) 0.119780255725466 3 0.0210792156716832 2.15094048629126 518 0.914323543593964 11 10 1 -6.74894183747911 LTS-039 chr3 179371200 179399568 28369 * USP13 NA 0 NA 0.875 1 NA NA NA NA NA LTS-039 chr3 179399569 180665787 1266219 * c(TTC14, CCDC39, PEX5L, FXR1, USP13) 0.0928308626292646 6 0.0989242134161298 1.70255296098023 752 0.965098440644566 7 7 0 -6.82518978569978 LTS-039 chr3 180665788 180666167 380 * FXR1 NA 0 NA 3.656 1 NA NA NA NA NA LTS-039 chr3 180666168 181432262 766095 * c(DNAJC19, SOX2-OT, SOX2, FXR1) NA 0 NA 2.67839670950609 175 1.4543518292416 14 NA NA -5.76441987752933 LTS-039 chr3 181432263 181582766 150504 * SOX2-OT NA 0 NA 1.055 1 NA NA NA NA NA LTS-039 chr3 181582767 183824773 2242007 * c(LINC00888, ABCC5, ABCC5-AS1, HTR3C, HTR3D, MCF2L2, ATP11B, LAMP3, HTR3E, FLJ46066, DCUN1D1, KLHL24, PARL, YEATS2, MCCC1, MAP6D1, B3GNT5, KLHL6) 0.135295883147559 31 0.0326324925479571 1.93495497053401 1949 1.10082176950179 10 9 1 -6.73386587490315 LTS-039 chr3 183824774 183910636 85863 * c(AP2M1, DVL3, HTR3E, ABCF3, EIF2B5) 0.134622671945172 12 0.0315416991913687 2.80510046565195 444 1.20080210065983 10 9 1 -6.73744453180076 LTS-039 chr3 183910637 184010797 100161 * c(MIR1224, ALG3, ABCF3, VWA5B2, CAMK2N2, ECE2) 0.0550802435399566 2 0.122329473145273 1.94997475228278 396 0.871417405970855 9 9 0 -6.73594065038252 LTS-039 chr3 184010798 184090099 79302 * c(CLCN2, FAM131A, EIF4G1, POLR2H, PSMD2, SNORD66, THPO, ECE2) 0.141523327366595 8 0.0166647617959059 2.85953696545512 614 1.10006239250985 17 15 2 -6.76392732109869 LTS-039 chr3 184090100 184157389 67290 * c(THPO, CHRD) 0.15821730431692 3 0.0709248428502548 1.46040230180566 191 0.544357562656148 8 7 1 -6.73914687287863 LTS-039 chr3 184157390 184647357 489968 * c(EPHB3, VPS8, MAGEF1) 0.110452664105615 8 0.0565127988032041 2.57822065235689 380 1.20432221683898 12 11 1 -6.73699338922157 LTS-039 chr3 184647358 185201280 553923 * c(EHHADH, VPS8, C3orf70, EHHADH-AS1, MAP3K13) 0.126407660998133 7 0.035188607463753 1.70784046408203 477 0.987890181418886 11 10 1 -6.75631873210203 LTS-039 chr3 185201281 186302354 1101074 * c(IGF2BP2, CRYGS, DGKG, LIPH, ETV5, LOC253573, NMRAL1P1, DNAJB11, TBCCD1, SENP2, TRA2B, IGF2BP2-AS1, TMEM41A, MAP3K13) 0.126236581524291 10 0.0608732745591656 2.46766142688349 1145 1.09858525463448 11 10 1 -6.74453655742365 LTS-039 chr3 186302355 186303072 718 * DNAJB11 NA 0 NA 1.106 1 NA NA NA NA NA LTS-039 chr3 186303073 186461710 158638 * c(AHSG, FETUB, HRG, KNG1, DNAJB11) 0.146890092581825 13 0.0288430767589568 1.4635848090861 282 0.752445987352441 9 8 1 -6.74086777820696 LTS-039 chr3 186461711 186501093 39383 * KNG1 NA 0 NA 8.572 1 NA NA NA NA NA LTS-039 chr3 186501094 186515411 14318 * c(EIF4A2, RFC4, SNORA63, SNORD2, SNORA4, SNORA81) NA 0 NA 4.63455594362938 121 1.9910604047245 20 NA NA -5.76450033646165 LTS-039 chr3 186515412 186518870 3459 * RFC4 NA 0 NA 1.549 1 NA NA NA NA NA LTS-039 chr3 186518871 188426637 1907767 * c(LOC100131635, ADIPOQ-AS1, RPL39L, RTP1, LPP-AS2, RTP2, FLJ42393, LPP, MASP1, RFC4, BCL6, RTP4, ST6GAL1, SST, ADIPOQ) 0.141037411515921 22 0.0459825865779457 1.6983055277317 755 2.31012636410935 9 8 1 -6.74737440123388 LTS-039 chr3 188426638 188426725 88 * LPP NA 0 NA 2.365 1 NA NA NA NA NA LTS-039 chr3 188426726 189038628 611903 * c(TPRG1-AS2, TPRG1, LPP) 0.0874315538450898 18 0.036103156489381 2.58840295711552 460 1.48968610885883 16 15 1 -6.73775702272688 LTS-039 chr3 189038629 189038648 20 * TPRG1 0.104 1 NA 6.455 1 NA NA NA NA NA LTS-039 chr3 189038649 189043110 4462 * TPRG1 0.124833946059671 3 0.0200748598998847 4.26250556977558 96 1.0370610573792 19 17 2 -6.73424176210922 LTS-039 chr3 189043111 189349163 306053 * character(0) NA 0 NA 1.241 1 NA NA NA NA NA LTS-039 chr3 189349164 192517485 3168322 * c(MIR944, SNAR-I, CLDN16, TMEM207, MB21D2, CCDC50, PYDC2, FGF12, UTS2B, OSTN, IL1RAP, P3H2, GMNC, TP63, CLDN1) 0.154708694515735 54 0.0463724327130168 1.57915389083401 1300 0.778780472522688 8 7 1 -6.76132616004248 LTS-039 chr3 192517486 192635408 117923 * MB21D2 NA 0 NA 5.973 1 NA NA NA NA NA LTS-039 chr3 192635409 193410043 774635 * c(OPA1-AS1, MB21D2, ATP13A5, OPA1, HRASLS, ATP13A4, MGC2889) 0.0996737384174466 12 0.0651284860638546 2.10485292189342 548 1.24876199173011 13 12 1 -6.74738116946854 LTS-039 chr3 193410044 193853847 443804 * c(DPPA2P3, OPA1, LOC647323) NA 0 NA 10.097 1 NA NA NA NA NA LTS-039 chr3 193853848 193856512 2665 * HES1 NA 0 NA 5.99619641502255 45 3.58373596582216 20 NA NA -5.76443665449561 LTS-039 chr3 193856513 194060811 204299 * c(LINC00887, CPN2) NA 0 NA 2.094 1 NA NA NA NA NA LTS-039 chr3 194060812 194123409 62598 * c(LRRC15, CPN2, GP5, ATP13A3) NA 0 NA 1.72291164165049 256 0.708287917070549 9 NA NA -5.76453270611141 LTS-039 chr3 194123410 194123508 99 * ATP13A3 NA 0 NA 2.178 1 NA NA NA NA NA LTS-039 chr3 194123509 195345367 1221859 * c(TMEM44-AS1, LOC100507391, MIR5692C1, XXYLT1-AS2, FAM43A, XXYLT1, ACAP2, APOD, LINC00884, PPP1R2, LSG1, ATP13A3, TMEM44) 0.11183503203345 23 0.0288471506871441 2.55590211903363 938 1.12402271104022 12 11 1 -6.74025707147798 LTS-039 chr3 195345368 195377626 32259 * character(0) 0.0824731880288706 2 0.0756604255869606 1.10352212777077 48 1.01112071713022 5 5 0 -6.73411795286209 LTS-039 chr3 195377627 195453188 75562 * c(MUC20, MIR570, SDHAP2) 0.204799750752518 12 0.149092075475851 2.05698402656235 95 1.50478924017114 11 9 2 -6.73319908572055 LTS-039 chr3 195453189 195453417 229 * MUC20 0.056194981055191 4 0.0118988794990677 3.82973431710647 8 0.264506413640847 7 7 0 -6.77618069492358 LTS-039 chr3 195453418 195456545 3128 * MUC20 0.414 1 NA 3.98049683222476 5 0.928564321950828 20 20 0 -5.76441599500846 LTS-039 chr3 195456546 195477957 21412 * c(MUC20, MUC4) 0.444481268143097 5 0.0419130051416025 4.62255111965572 66 4.98724700204838 20 10 10 -6.79727686632371 LTS-039 chr3 195477958 195603555 125598 * c(TNK2, MUC4) 0.184317897791142 2 0.102530483272049 1.5948170123861 265 0.562320570200548 7 6 1 -6.735801713224 LTS-039 chr3 195603556 195605115 1560 * TNK2 NA 0 NA 1.855 1 NA NA NA NA NA LTS-039 chr3 195605116 195701331 96216 * c(TNK2, SDHAP1) 0.207949681295737 3 0.094732958010047 2.14662282267252 95 0.891412033985242 11 9 2 -6.73309627904222 LTS-039 chr3 195701332 195706563 5232 * SDHAP1 0.2 1 NA 1.32692487924989 19 0.803272357007363 6 6 0 -5.76442627264818 LTS-039 chr3 195706564 197672616 1966053 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, RUBCN) 0.130167575200354 41 0.0482130687677107 2.14953321782699 2674 0.890550968555494 11 10 1 -6.74548170483751 LTS-039 chr3 197672617 197677685 5069 * c(RPL35A, IQCG) NA 0 NA 5.247 1 NA NA NA NA NA LTS-039 chr3 197677686 197687344 9659 * c(RPL35A, IQCG, LMLN) NA 0 NA 4.89491753466882 42 1.59656096362435 20 NA NA -5.76456226127705 LTS-039 chr3 197687345 197767876 80532 * LMLN 0 2 0 1.89846539328867 112 2.07348249389997 0 0 0 -Inf LTS-039 chr3 197767877 197770512 2636 * LMLN NA 0 NA 2.33164328200614 59 1.0798702197063 12 NA NA -5.76441013827167 LTS-039 chr4 53174 493032 439859 * c(ZNF595, ZNF721, ZNF718, PIGG, ZNF876P, ZNF732, ZNF141, ABCA11P) 0.089 1 NA 0.676854445564088 354 0.308312776072349 3 3 0 -5.77122489939507 LTS-039 chr4 493033 657677 164645 * c(PDE6B, PIGG) NA 0 NA 0.533658725436552 193 0.250319607769968 2 NA NA -5.76445607991999 LTS-039 chr4 657678 657854 177 * PDE6B NA 0 NA 0.857 1 NA NA NA NA NA LTS-039 chr4 657855 786469 128615 * c(LOC100129917, PCGF3, CPLX1, MYL5, PDE6B, ATP5I, MFSD7) 0.0733795574185928 10 0.0423635063075127 0.887101948804477 347 0.545878109971458 5 5 0 -6.75390819021131 LTS-039 chr4 786470 818273 31804 * CPLX1 NA 0 NA 0.253 1 NA NA NA NA NA LTS-039 chr4 818274 1107278 289005 * c(CPLX1, SLC26A1, DGKQ, GAK, RNF212, IDUA, FGFRL1, TMEM175) 0.149984590368602 28 0.0708395888927749 0.551862442756555 777 0.230011547770461 2 2 0 -6.75011949689526 LTS-039 chr4 1107279 1164277 56999 * c(TMED11P, SPON2, RNF212) 0.096 1 NA 0.57298703003656 25 0.179730650326166 2 2 0 -5.7706002371243 LTS-039 chr4 1164278 1235733 71456 * c(LOC100130872, SPON2, CTBP1) 0.122509954124781 4 0.0773450063029282 0.455605250553719 177 0.149736580462175 2 2 0 -6.91552610700802 LTS-039 chr4 1235734 1243404 7671 * c(CTBP1, CTBP1-AS2) NA 0 NA 1.079 1 NA NA NA NA NA LTS-039 chr4 1243405 1345606 102202 * c(MAEA, UVSSA, CTBP1-AS2) NA 0 NA 0.754298537543699 141 0.261193483777024 3 NA NA -5.76751203833369 LTS-039 chr4 1345607 1346771 1165 * UVSSA NA 0 NA 0.302 1 NA NA NA NA NA LTS-039 chr4 1346772 1670648 323877 * c(FAM53A, CRIPAK, UVSSA) 0.181751356366292 7 0.062922476868271 0.408540165465315 277 0.183052667566545 2 2 0 -7.17665065297098 LTS-039 chr4 1670649 1694547 23899 * c(FAM53A, SLBP) NA 0 NA 0.787 1 NA NA NA NA NA LTS-039 chr4 1694548 1729550 35003 * c(TACC3, SLBP, TMEM129) 0.141227998300418 3 0.0490543915805031 0.701395246588244 145 0.389377250736101 2 2 0 -6.83096167286805 LTS-039 chr4 1729551 1920425 190875 * c(TACC3, FGFR3, LETM1, WHSC1) 0.158624457206522 10 0.0818120474692518 0.495024950025116 414 0.231679755671707 2 2 0 -6.74357799870762 LTS-039 chr4 1920426 1932276 11851 * WHSC1 NA 0 NA 1.478 1 NA NA NA NA NA LTS-039 chr4 1932277 1945655 13379 * WHSC1 NA 0 NA 1.06279099170376 98 0.261651572199726 5 NA NA -5.76441921799246 LTS-039 chr4 1945656 2264049 318394 * c(MIR943, MIR4800, MXD4, NAT8L, POLN, C4orf48, SCARNA22, WHSC1, NELFA, HAUS3) 0.0279123759110681 3 0.0762102355330306 0.653101100502238 864 0.344714265831273 4 4 0 -7.32093910999786 LTS-039 chr4 2264050 2271292 7243 * character(0) NA 0 NA 0.451 1 NA NA NA NA NA LTS-039 chr4 2271293 2598018 326726 * c(CFAP99, ZFYVE28, RNF4, FAM193A) 0.145120311561069 8 0.0863827653114737 0.511770383837727 299 0.259240683867555 2 2 0 -6.75481339822342 LTS-039 chr4 2598019 2626925 28907 * FAM193A NA 0 NA 1.078 1 NA NA NA NA NA LTS-039 chr4 2626926 2838758 211833 * c(SH3BP2, TNIP2, FAM193A) 0.0995911912190995 5 0.0520931857347965 0.877824216326916 352 0.352389679290757 4 4 0 -6.73734398851219 LTS-039 chr4 2838759 2838819 61 * SH3BP2 NA 0 NA 1.958 1 NA NA NA NA NA LTS-039 chr4 2838820 2968546 129727 * c(MFSD10, ADD1, GRK4, NOP14-AS1, SH3BP2, NOP14) 0.0780472640123374 9 0.032986529237116 1.16217307469377 411 0.544837778867789 5 5 0 -6.73556201043047 LTS-039 chr4 2968547 2986202 17656 * GRK4 NA 0 NA 0.678 1 NA NA NA NA NA LTS-039 chr4 2986203 3526786 540584 * c(HTT-AS, DOK7, GRK4, HTT, HGFAC, MSANTD1, LRPAP1, RGS12) 0.156894139816138 50 0.0730432804324021 0.545212344116504 1194 0.294423260305087 2 2 0 -6.73684957630003 LTS-039 chr4 3526787 3589560 62774 * c(LINC00955, LRPAP1) 0.404 1 NA 0.883723339549473 13 0.27647538954786 4 4 0 -5.76445011534064 LTS-039 chr4 3589561 4199126 609566 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP) 0.353170038494662 22 0.0730902306617089 0.525446815660912 103 0.33486012121557 3 2 1 -7.05408627838333 LTS-039 chr4 4199127 4199192 66 * OTOP1 NA 0 NA 0.947 1 NA NA NA NA NA LTS-039 chr4 4199193 4239539 40347 * c(OTOP1, TMEM128) 0.450112955950894 2 0.0636396103067892 1.10056892414443 36 0.604916583518648 6 3 3 -6.78948646517242 LTS-039 chr4 4239540 4276475 36936 * c(LYAR, TMEM128) 0.092 1 NA 0.818976256293137 61 0.438442329734176 4 4 0 -5.76524483477773 LTS-039 chr4 4276476 5016468 739993 * c(STX18-AS1, ZBTB49, NSG1, MSX1, STX18, CYTL1, LYAR) 0.100612140020615 4 0.090160967164289 0.708565778023104 310 0.471199800419789 3 3 0 -6.75918632240704 LTS-039 chr4 5016469 5925136 908668 * c(MIR378D1, LINC01587, EVC2, CRMP1, EVC, CYTL1, STK32B) 0.143007167985439 22 0.0440764045406319 0.506834872352885 618 0.267525539111471 2 2 0 -6.83776632526208 LTS-039 chr4 5925137 5958810 33674 * character(0) NA 0 NA 1.149 1 NA NA NA NA NA LTS-039 chr4 5958811 5977592 18782 * character(0) 0.0754977272257682 2 0.000707106781186548 1.00138099235285 72 0.603258592626301 19 18 1 -9.0598064816076 LTS-039 chr4 5977593 6623296 645704 * c(JAKMIP1, MAN2B2, LOC285484, PPP2R2C, WFS1) 0.127029885665338 6 0.0352079536468679 0.47770290183878 567 0.213348561154335 2 2 0 -7.31260981005046 LTS-039 chr4 6623297 7432206 808910 * c(LOC100129931, MIR4798, MRFAP1L1, MAN2B2, CCDC96, BLOC1S4, TBC1D14, SORCS2, S100P, FLJ36777, PSAPL1, GRPEL1, MRFAP1, LOC93622, TADA2B, KIAA0232) 0.130151010085087 15 0.0369220543203936 0.668812292431906 687 0.275085125504571 3 3 0 -6.80702615393649 LTS-039 chr4 7432207 7744547 312341 * c(MIR4274, SORCS2, PSAPL1) 0.131994692402742 18 0.0374036889586097 0.486996444677041 298 0.248208476601107 2 2 0 -7.07569526688487 LTS-039 chr4 7744548 7760443 15896 * c(SORCS2, AFAP1, AFAP1-AS1) NA 0 NA 1.259 1 NA NA NA NA NA LTS-039 chr4 7760444 8472907 712464 * c(TRMT44, SH3TC1, AFAP1, ACOX3, ABLIM2, AFAP1-AS1, HTRA3) 0.143767407598648 18 0.0533315257046611 0.681323527947178 837 0.29170446301577 3 3 0 -6.86434450409228 LTS-039 chr4 8472908 8472911 4 * TRMT44 NA 0 NA 0.571 1 NA NA NA NA NA LTS-039 chr4 8472912 11375302 2902391 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, CLNK, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, MIR572, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, CPZ, ZNF518B, WDR1) 0.104270160564383 18 0.0579118385630402 0.516475876767806 795 0.287884222879607 2 2 0 -7.25953618035133 LTS-039 chr4 11375303 11394763 19461 * character(0) NA 0 NA 0.819 1 NA NA NA NA NA LTS-039 chr4 11394764 13600775 2206012 * c(BOD1L1, LINC01097, LINC01096, NKX3-2, RAB28, HS3ST1) 0.116537412220668 6 0.0901837014099554 0.680241067208034 410 0.279525393451317 3 3 0 -6.76714274629735 LTS-039 chr4 13600776 13606439 5664 * BOD1L1 0.199365466512485 2 0.0127279220613578 0.45858913708468 122 0.104109202214016 6 5 1 -7.56795674103233 LTS-039 chr4 13606440 15060949 1454510 * c(MIR5091, CPEB2, LINC01085, BOD1L1, CPEB2-AS1) 0.139165650264226 4 0.048071994619182 0.813636519828723 164 0.358751693994659 3 3 0 -6.95231578709771 LTS-039 chr4 15060950 23833332 8772383 * c(SLIT2-IT1, LOC100505912, MIR548AX, PPARGC1A, C1QTNF7, CPEB2, PACRGL, ADGRA3, TAPT1, TAPT1-AS1, LCORL, FBXL5, FAM184B, FAM200B, KCNIP4-IT1, MIR218-1, LAP3, DCAF16, CC2D2A, GBA3, QDPR, NCAPG, CLRN2, BST1, MED28, KCNIP4, FGFBP2, PROM1, LDB2, SLIT2, CD38, FGFBP1) 0.157431631797641 46 0.0626309488096123 0.566053231224865 2830 0.342140653248139 2 2 0 -6.91462177042964 LTS-039 chr4 23833333 24521921 688589 * c(PPARGC1A, MIR573) NA 0 NA 1.46489334762564 60 0.52582464585838 7 NA NA -5.7651285384799 LTS-039 chr4 24521922 26433329 1911408 * c(SLC34A2, DHX15, SEL1L3, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, SMIM20, SEPSECS, LGI2, PI4K2B, SOD3, CCDC149) 0.109011320788213 23 0.0586049614109274 0.721601365445734 1284 0.422913135712145 3 3 0 -6.753407754737 LTS-039 chr4 26433330 38051570 11618241 * c(MIR4275, MIR4801, PTTG2, ARAP2, TBC1D1, RBPJ, DTHD1, PCDH7, PGM2, C4orf19, TBC1D19, NWD2, STIM2, RELL1, CCKAR) 0.167883306324736 24 0.074403996600619 0.463313666010577 1438 0.237590480294862 2 2 0 -8.4370261947187 LTS-039 chr4 38051571 38053558 1988 * TBC1D1 NA 0 NA 0.632 1 NA NA NA NA NA LTS-039 chr4 38053559 38062233 8675 * TBC1D1 0.073 1 NA 0.688690414395657 13 0.092643928219271 3 3 0 -5.76504017738312 LTS-039 chr4 38062234 38692160 629927 * c(TBC1D1, KLF3, KLF3-AS1) 0.318 1 NA 0.698771721949004 133 0.213657778409254 3 3 0 -5.76700395011973 LTS-039 chr4 38692161 39450304 758144 * c(TLR6, KLB, KLHL5, KLF3, WDR19, RFC1, MIR574, TLR1, TMEM156, TLR10, FAM114A1) 0.363518714537391 26 0.0507552801345679 0.740471280346463 1009 0.367090700622933 3 2 1 -6.7519668430388 LTS-039 chr4 39450305 39450410 106 * KLB NA 0 NA 1.275 1 NA NA NA NA NA LTS-039 chr4 39450411 39463929 13519 * c(LIAS, KLB, RPL9) 0.393071828952726 8 0.0736079139766914 1.63658566082195 115 0.579350083013737 13 8 5 -6.73989153053453 LTS-039 chr4 39463930 39465087 1158 * LIAS NA 0 NA 1.058 1 NA NA NA NA NA LTS-039 chr4 39465088 42072523 2607436 * c(MIR4802, UGDH-AS1, UCHL1-AS1, SLC30A9, LIAS, SMIM14, LIMCH1, PDS5A, DCAF4L1, UBE2K, APBB2, LOC344967, RHOH, LOC401127, RBM47, TMEM33, CHRNA9, N4BP2, UCHL1, UGDH, NSUN7, PHOX2B) 0.320057347913198 47 0.10984463841419 0.863591074392361 2061 0.44019138595474 4 3 1 -6.7663751389402 LTS-039 chr4 42072524 42072622 99 * SLC30A9 NA 0 NA 0.867 1 NA NA NA NA NA LTS-039 chr4 42072623 44295919 2223297 * c(ATP8A1, SLC30A9, SHISA3, KCTD8, BEND4, GRXCR1) 0.386276535099998 10 0.0641461006002876 0.637460957398474 659 0.224404761720229 3 2 1 -7.06837880859746 LTS-039 chr4 44295920 44449555 153636 * KCTD8 NA 0 NA 0.386 1 NA NA NA NA NA LTS-039 chr4 44449556 44626760 177205 * c(YIPF7, KCTD8) NA 0 NA 0.36326231918942 42 0.119089472898189 1 NA NA -5.77426295189572 LTS-039 chr4 44626761 44626806 46 * YIPF7 0.284 1 NA 1.146 1 NA NA NA NA NA LTS-039 chr4 44626807 46086120 1459314 * c(GNPDA2, GABRG1, YIPF7, GUF1) 0.366591933484623 18 0.0702353652795208 0.826447996786979 461 0.435390755363158 3 2 1 -6.8378488353695 LTS-039 chr4 46086121 46099188 13068 * GABRG1 NA 0 NA 0.429 1 NA NA NA NA NA LTS-039 chr4 46099189 47594992 1495804 * c(COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, COMMD8, ATP10D) 0.367859097052909 37 0.0696974478315687 0.563887749484157 818 0.253213040743556 2 1 1 -7.23569407057167 LTS-039 chr4 47594993 47595091 99 * ATP10D NA 0 NA 0.736 1 NA NA NA NA NA LTS-039 chr4 47595092 48988450 1393359 * c(CORIN, CNGA1, OCIAD2, NFXL1, NIPAL1, SLC10A4, FRYL, ZAR1, OCIAD1, ATP10D, SLAIN2, TEC, TXK, CWH43) 0.366365836015261 27 0.054274468663617 0.724546202322281 1425 0.412647484070601 3 2 1 -6.73933690790068 LTS-039 chr4 48988451 49064107 75657 * CWH43 NA 0 NA 0.528527586334708 87 0.292290694412423 2 NA NA -5.76441979105236 LTS-039 chr4 52709193 52771452 62260 * DCUN1D4 NA 0 NA 1.37373137068484 61 0.574251002792028 7 NA NA -5.7646130463926 LTS-039 chr4 52771453 52775031 3579 * DCUN1D4 NA 0 NA 0.901 1 NA NA NA NA NA LTS-039 chr4 52775032 52883847 108816 * c(DCUN1D4, LRRC66) NA 0 NA 0.777891537435148 155 0.224089453381642 3 NA NA -5.77482049227608 LTS-039 chr4 52883848 52886846 2999 * character(0) NA 0 NA 1.591 1 NA NA NA NA NA LTS-039 chr4 52886847 52888499 1653 * SGCB 0.4 1 NA 1.44884989759587 27 0.261915402492251 7 7 0 -5.76441185621888 LTS-039 chr4 52888500 53460536 572037 * c(SPATA18, SGCB, USP46) 0.445703044432815 7 0.0211322367148257 1.54881528315883 211 0.843289968770275 8 4 4 -7.02217094978902 LTS-039 chr4 53460537 53728499 267963 * c(ERVMER34-1, MIR4449, LINC01618, DANCR, USP46, RASL11B, SNORA26) NA 0 NA 0.831605443581567 184 0.48492748791717 4 NA NA -5.76773874929487 LTS-039 chr4 53728500 53740234 11735 * c(SCFD2, RASL11B) NA 0 NA 1.8354904159215 73 0.569742955206653 9 NA NA -5.76442144226544 LTS-039 chr4 53740235 53751873 11639 * SCFD2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-039 chr4 53751874 56890716 3138843 * c(SRD5A3-AS1, LNX1-AS1, LNX1-AS2, NMU, PDCL2, SCFD2, GSX2, CHIC2, KDR, KIT, RPL21P44, PDGFRA, EXOC1, TMEM165, LOC644145, SRD5A3, FIP1L1, LNX1, CLOCK, CEP135) 0.35022168983943 34 0.111114292141036 0.780774980193412 1549 0.370608262252599 3 2 1 -6.8711493764574 LTS-039 chr4 56890717 57248828 358112 * c(AASDH, KIAA1211, CEP135) 0.349072144349856 7 0.0622881170353505 0.561446260157845 229 0.248605453235095 3 2 1 -6.99578713846219 LTS-039 chr4 57248829 57250249 1421 * AASDH NA 0 NA 0.942 1 NA NA NA NA NA LTS-039 chr4 57250250 57976260 726011 * c(THEGL, PAICS, ARL9, AASDH, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, REST, SPINK2, SRP72, NOA1, HOPX) 0.293430390749556 23 0.136133116090254 0.918519358343753 883 0.58566723974275 4 3 1 -6.73469529096532 LTS-039 chr4 57976261 68337787 10361527 * c(EPHA5-AS1, EPHA5, ADGRL3, TECRL, IGFBP7-AS1, IGFBP7, LOC401134) 0.387838558134691 22 0.0670393855936883 0.59188613685037 601 0.288939120177872 2 1 1 -7.74350299190043 LTS-039 chr4 68337788 68337841 54 * character(0) NA 0 NA 0.786 1 NA NA NA NA NA LTS-039 chr4 68337842 68566878 229037 * c(CENPC, STAP1, UBA6) 0.358322438112919 5 0.0470446596331613 0.821763312207745 420 0.360163918899575 3 2 1 -6.79920520021964 LTS-039 chr4 68566879 68566883 5 * UBA6 NA 0 NA 0.438 1 NA NA NA NA NA LTS-039 chr4 68566884 68906179 339296 * c(GNRHR, TMPRSS11A, UBA6-AS1, UBA6, TMPRSS11GP, TMPRSS11D) 0.40990478581791 2 0.0947523086789973 0.542186186840426 284 0.214558538622434 2 1 1 -6.76377320190343 LTS-039 chr4 68906180 68907460 1281 * UBA6-AS1 NA 0 NA 0.168830793486403 46 0.162811494092695 0 NA NA -5.76441118702193 LTS-039 chr4 68907461 68934560 27100 * c(TMPRSS11F, SYT14P1, UBA6-AS1, LOC550113) 0.262 1 NA 0.39470864473548 60 0.405477572578813 1 1 0 -5.76581743859333 LTS-039 chr4 68934561 68935610 1050 * c(TMPRSS11F, UBA6-AS1, LOC550113) NA 0 NA 0.946 1 NA NA NA NA NA LTS-039 chr4 68935611 69512595 576985 * c(FTLP10, TMPRSS11B, TMPRSS11F, TMPRSS11BNL, UBA6-AS1, LOC550113, UGT2B17) 0.332053007590839 13 0.106207827226163 0.747543450876609 399 0.399417051126665 3 2 1 -6.81855164443085 LTS-039 chr4 69512596 69512672 77 * character(0) NA 0 NA 0.581 1 NA NA NA NA NA LTS-039 chr4 69512673 70936215 1423543 * c(UGT2B11, UGT2A1, CSN1S1, CSN2, SULT1B1, CSN1S2AP, HTN1, HTN3, UGT2B28, UGT2A2, STATH, SULT1E1, UGT2B4, UGT2B7) 0.338870998486566 14 0.0745604334869255 0.509685019111031 586 0.309134456831417 2 1 1 -7.54247975464331 LTS-039 chr4 70936216 71021730 85515 * c(CSN1S2BP, CSN1S2AP, PRR27) 0 1 NA 1.00004437240343 64 0.597638128252599 5 5 0 -5.76510704681552 LTS-039 chr4 71021731 71024045 2315 * PRR27 NA 0 NA 0.444 1 NA NA NA NA NA LTS-039 chr4 71024046 71521493 497448 * c(ENAM, SMR3B, CSN3, AMBN, FDCSP, SMR3A, JCHAIN, PRR27, AMTN, MUC7, ODAM, OPRPN, CABS1) 0.368235957482016 8 0.15565753389137 0.471593101147524 512 0.329945203871941 2 1 1 -6.86619987330566 LTS-039 chr4 71521494 71896325 374832 * c(DCK, RUFY3, GRSF1, JCHAIN, UTP3, MOB1B) 0.186734093338474 5 0.152377819908279 0.844734012654671 568 0.444207929323789 3 3 0 -6.8812607823735 LTS-039 chr4 71896326 72102211 205886 * c(DCK, SLC4A4) NA 0 NA 0.389 1 NA NA NA NA NA LTS-039 chr4 72102212 73924029 1821818 * c(NPFFR2, GC, COX18, SLC4A4, ADAMTS3) 0.376384962068391 5 0.0415415454695658 0.549515401089359 478 0.216029340315038 2 1 1 -7.64318539523514 LTS-039 chr4 73924030 73927474 3445 * COX18 NA 0 NA 1.019 1 NA NA NA NA NA LTS-039 chr4 73927475 73943249 15775 * c(ANKRD17, COX18) 0.394 2 5.55111512312578e-17 1.10250795304534 101 0.332758742027974 18 11 7 -193.25540186993 LTS-039 chr4 73943250 73944329 1080 * ANKRD17 NA 0 NA 0.834 1 NA NA NA NA NA LTS-039 chr4 73944330 75314983 1370654 * c(PPBPP2, RASSF6, AFM, AFP, EREG, ALB, EPGN, ANKRD17, CXCL1, CXCL2, CXCL3, CXCL8, AREG, MTHFD2L, PF4, PF4V1, PPBP, CXCL6, CXCL5, LOC728040) 0.343498160288906 16 0.143710458329703 0.703344677660707 1171 0.382130241909874 3 2 1 -6.7558374531396 LTS-039 chr4 75314984 75481958 166975 * AREG NA 0 NA 0.235 1 NA NA NA NA NA LTS-039 chr4 75481959 75975042 493084 * c(PARM1, AREG, BTC) 0.359487505781679 2 0.00282842712474619 0.480162913579134 149 0.195102727502659 6 4 2 -11.6647672486754 LTS-039 chr4 75975043 75975129 87 * PARM1 NA 0 NA 0.775 1 NA NA NA NA NA LTS-039 chr4 75975130 77100807 1125678 * c(THAP6, C4orf26, PARM1, RCHY1, NAAA, CXCL10, ART3, CXCL9, LOC441025, NUP54, PPEF2, SDAD1, CXCL11, USO1, CDKL2, SCARB2, G3BP2) 0.330131866742592 11 0.0722720869039669 0.766261258665122 1300 0.379102857593136 3 2 1 -6.94613929605557 LTS-039 chr4 77100808 77102096 1289 * SCARB2 NA 0 NA 1.614 1 NA NA NA NA NA LTS-039 chr4 77102097 77172985 70889 * c(FAM47E, FAM47E-STBD1, SCARB2) NA 0 NA 1.73210868620085 51 0.460184071440813 9 NA NA -5.76465811713005 LTS-039 chr4 77172986 77177288 4303 * c(FAM47E, FAM47E-STBD1) NA 0 NA 0.531 1 NA NA NA NA NA LTS-039 chr4 77177289 77960354 783066 * c(FAM47E, MIR4450, FAM47E-STBD1, CCDC158, SOWAHB, SEPT11, SHROOM3, STBD1) 0.277495783510577 4 0.201882804286712 0.759599018634158 753 0.370271604901401 4 3 1 -6.82580772568283 LTS-039 chr4 77960355 77968332 7978 * character(0) NA 0 NA 1.574 1 NA NA NA NA NA LTS-039 chr4 77968333 78106310 137978 * c(CCNI, CCNG2) 0.468 1 NA 1.11988420894564 223 0.456628078236677 5 5 0 -5.7651621990721 LTS-039 chr4 78106311 79860477 1754167 * c(LINC01094, CXCL13, PAQR3, CNOT6L, ANXA3, BMP2K, MRPL1, FRAS1) 0.327982363119763 31 0.123198589574387 0.763961552071474 1302 0.465696114582432 3 2 1 -6.83044623551628 LTS-039 chr4 79860478 80246288 385811 * c(LINC01088, PAQR3, NAA11) NA 0 NA 0.557 1 NA NA NA NA NA LTS-039 chr4 80246289 81974638 1728350 * c(LINC00989, PCAT4, ANTXR2, FGF5, C4orf22, GK2, PRDM8, BMP3, NAA11) 0.351423412790206 7 0.162686230283357 0.543169491716876 558 0.314148970589554 2 1 1 -6.87779095201868 LTS-039 chr4 81974639 81974742 104 * BMP3 NA 0 NA 0.877 1 NA NA NA NA NA LTS-039 chr4 81974743 83276642 1301900 * c(RASGEF1B, HNRNPD, PRKG2, BMP3) 0.314184945587452 12 0.124906116258524 0.724260265354157 399 0.343494097966166 3 2 1 -6.85739931384383 LTS-039 chr4 83276643 83277787 1145 * HNRNPD NA 0 NA 1.244 1 NA NA NA NA NA LTS-039 chr4 83277788 83352147 74360 * c(HNRNPD, ENOPH1, HNRNPDL) NA 0 NA 1.66553700758983 103 0.808144697020932 8 NA NA -5.76447872625017 LTS-039 chr4 83352148 83369067 16920 * ENOPH1 NA 0 NA 0.868 1 NA NA NA NA NA LTS-039 chr4 83369068 88401738 5032671 * c(THAP9-AS1, LOC100506746, MIR4451, MIR5705, CDS1, HPSE, HELQ, LIN54, C4orf36, SEC31A, WDFY3, COQ2, SLC10A6, HSD17B13, WDFY3-AS2, AFF1, LINC00575, TMEM150C, NKX6-1, MRPS18C, COPS4, HSD17B11, PLAC8, NUDT9, MAPK10, KLHL8, PTPN13, ENOPH1, MIR575, THAP9, SCD5, ARHGAP24, SPARCL1, FAM175A, GPAT3) 0.334524482055013 63 0.114754699533519 0.780894667612214 3080 0.408580626022562 3 2 1 -6.94730052200791 LTS-039 chr4 88401739 88403501 1763 * SPARCL1 NA 0 NA 0.532 1 NA NA NA NA NA LTS-039 chr4 88403502 88898038 494537 * c(DMP1, DSPP, IBSP, MEPE, SPP1, SPARCL1) 0.320237276293853 9 0.124289983506315 0.506301621073667 333 0.375365435315116 3 2 1 -7.06591812323678 LTS-039 chr4 88898039 90166924 1268886 * c(PYURF, FAM13A, PPM1K, TIGD2, NAP1L5, FAM13A-AS1, GPRIN3, HERC5, PKD2, HERC6, SPP1, HERC3, ABCG2) 0.374061765417539 18 0.0715946514597778 0.738708543983075 1226 0.453817743857903 3 2 1 -6.73933252324206 LTS-039 chr4 90166925 94751247 4584323 * c(MMRN1, GPRIN3, GRID2, CCSER1, ATOH1, SNCA-AS1, SNCA) 0.318861514895732 9 0.14562966730718 0.571682151453105 700 0.280506115836835 2 1 1 -7.2541646231883 LTS-039 chr4 94751248 95129454 378207 * SMARCAD1 NA 0 NA 0.908 1 NA NA NA NA NA LTS-039 chr4 95129455 100125031 4995577 * c(MIR3684, LOC100507053, TSPAN5, STPG2-AS1, PDLIM5, ADH4, ADH5, ADH6, EIF4E, METAP1, HPGDS, STPG2, PCNAP1, PDHA2, SMARCAD1, RAP1GDS1, BMPR1B, UNC5C) 0.333796217484818 69 0.0999710465331215 0.74841979591744 1761 0.561770727585275 3 2 1 -6.84011254679917 LTS-039 chr4 100125032 100273970 148939 * c(LOC100507053, ADH1A, ADH1B, ADH1C, ADH6) 0.361690800542971 9 0.0917248300322461 0.449495939550154 276 0.254000764680932 3 2 1 -7.01774844789439 LTS-039 chr4 100273971 100333448 59478 * ADH7 NA 0 NA 0.913 1 NA NA NA NA NA LTS-039 chr4 100333449 103720154 3386706 * c(LINC01216, DDIT4L, ADH7, LOC256880, DAPP1, H2AFZ, MANBA, MTTP, NFKB1, EMCN, BANK1, PPP3CA, SLC39A8, UBE2D3, DNAJB14, C4orf17, LAMTOR3, FLJ20021, TRMT10A) 0.368918264020599 68 0.096676477532878 0.679826001863056 1690 0.377957499099742 3 2 1 -6.76225447034458 LTS-039 chr4 103720155 103720627 473 * UBE2D3 NA 0 NA 1.189 1 NA NA NA NA NA LTS-039 chr4 103720628 103790729 70102 * c(CISD2, UBE2D3) 0.349073566441061 3 0.0837197706638044 1.60002277207336 68 0.717002479598682 9 6 3 -6.73415163219864 LTS-039 chr4 103790730 103806169 15440 * CISD2 NA 0 NA 0.509 1 NA NA NA NA NA LTS-039 chr4 103806170 104081854 275685 * c(CENPE, SLC9B2, SLC9B1, CISD2, BDH2) 0.379483016764385 6 0.040396369473836 0.731093563326949 358 0.37409932743228 3 2 1 -6.75945491395044 LTS-039 chr4 104081855 104507891 426037 * CENPE NA 0 NA 1.13372391058782 92 0.352048903368715 5 NA NA -5.77082681219162 LTS-039 chr4 104507892 107016839 2508948 * c(ARHGEF38-IT1, NPNT, PPA2, TET2, ARHGEF38, INTS12, TACR3, GSTCD, CXXC4, TBCK) 0.325234935462118 22 0.123725712558271 0.649447835540514 1148 0.37591313807873 3 2 1 -6.90124714099301 LTS-039 chr4 107016840 107037319 20480 * TBCK NA 0 NA 0.805 1 NA NA NA NA NA LTS-039 chr4 107037320 109010319 1973000 * c(GIMD1, CYP2U1, SGMS2, DKK2, HADH, LEF1, PAPSS1, AIMP1, TBCK) 0.328999616255779 20 0.125695789821885 0.819368591077019 752 0.391781793226043 4 3 1 -6.82505285509297 LTS-039 chr4 109010320 109576878 566559 * c(RPL34-AS1, LEF1, OSTC, RPL34, LEF1-AS1) NA 0 NA 1.9243925846833 86 0.815793050324402 10 NA NA -5.76474790527882 LTS-039 chr4 109576879 113578810 4001932 * c(SEC24B-AS1, SEC24B, RRH, C4orf32, EGF, ENPEP, CFI, LRIT3, MIR302B, LARP7, PITX2, GAR1, MCUB, ZGRF1, AP1AR, OSTC, NEUROG2, ETNPPL, ELOVL6, ALPK1, PLA2G12A, CASP6, COL25A1, TIFA) 0.335242014353567 46 0.129335103827714 0.729179796084544 2209 0.397194578662318 3 2 1 -6.78829701352438 LTS-039 chr4 113578811 113825562 246752 * ANK2 NA 0 NA 0.347 1 NA NA NA NA NA LTS-039 chr4 113825563 119179820 5354258 * c(MIR1243, MIR1973, TRAM1L1, ANK2, NDST4, MIR577, UGT8, ARSJ, CAMK2D, NDST3) 0.416929422094681 19 0.0506638965078361 0.581234350456115 1212 0.391500064785747 2 1 1 -6.94499495768605 LTS-039 chr4 119179821 119200308 20488 * SNHG8 NA 0 NA 5.299 1 NA NA NA NA NA LTS-039 chr4 119200309 119204277 3969 * c(SNHG8, SNORA24, PRSS12) NA 0 NA 1.94321849323859 63 1.12849042758957 10 NA NA -5.76441061210192 LTS-039 chr4 119204278 119216035 11758 * PRSS12 NA 0 NA 0.408 1 NA NA NA NA NA LTS-039 chr4 119216036 119424062 208027 * PRSS12 0.426 1 NA 0.576012260229095 109 0.222539274844047 2 2 0 -5.78121501920616 LTS-039 chr4 119424063 119476651 52589 * CEP170P1 NA 0 NA 0.345516379475411 135 0.183807421693908 1 NA NA -5.764588053228 LTS-039 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.481 1 NA NA NA NA NA LTS-039 chr4 119476981 121957305 2480325 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, PDE5A, SEC24D) 0.333644226730822 15 0.112588166510052 0.711495543821712 1252 0.384356072479154 3 2 1 -6.79882422527338 LTS-039 chr4 121957306 121957438 133 * NDNF NA 0 NA 0.613 1 NA NA NA NA NA LTS-039 chr4 121957439 122683090 725652 * c(TMEM155, ANXA5, NDNF, TNIP3, QRFPR) 0.357336479231769 11 0.0577066247969377 0.532948104432785 320 0.228315527299126 3 2 1 -7.39278740950455 LTS-039 chr4 122683091 122687143 4053 * c(PP12613, TMEM155) NA 0 NA 1.045 1 NA NA NA NA NA LTS-039 chr4 122687144 122746869 59726 * c(PP12613, EXOSC9, BBS7, CCNA2) 0.398948802939742 8 0.054 1.06776209713319 173 0.441919343861938 5 3 2 -6.74656892972908 LTS-039 chr4 122746870 122746956 87 * BBS7 NA 0 NA 0.799 1 NA NA NA NA NA LTS-039 chr4 122746957 123814568 1067612 * c(NUDT6, ADAD1, BBS12, FGF2, IL2, BBS7, IL21, TRPC3, CETN4P, KIAA1109) 0.325869185553577 16 0.111384300958438 0.630770543457878 936 0.295534718010538 3 2 1 -6.93445048152016 LTS-039 chr4 123814569 124324893 510325 * c(SPRY1, NUDT6, SPATA5, FGF2) 0.315692785868184 11 0.10912294984016 0.819190187363058 290 0.931386726047042 4 3 1 -6.75208944400294 LTS-039 chr4 125590045 126413161 823117 * c(ANKRD50, FAT4) 0.402488977026763 12 0.0548651238783056 0.468873403616552 468 0.202557211222291 2 1 1 -7.06722143046846 LTS-039 chr4 126413162 134071161 7658000 * c(MIR2054, PGRMC2, PLK4, SCLT1, C4orf33, HSPA4L, MFSD8, INTU, LARP1B, PCDH10, FAT4, JADE1, ABHD18, SLC25A31) 0.298129679925056 6 0.16505231493883 0.70730291779515 1405 0.366792105704265 3 2 1 -6.84922819442885 LTS-039 chr4 134071162 134071275 114 * PCDH10 NA 0 NA 0.35 1 NA NA NA NA NA LTS-039 chr4 134071276 134073974 2699 * PCDH10 NA 0 NA 0.307931936081747 61 0.0653615836101135 1 NA NA -5.77070561005748 LTS-039 chr4 134073975 134075403 1429 * PCDH10 NA 0 NA 0.803 1 NA NA NA NA NA LTS-039 chr4 134075404 139089210 5013807 * c(PABPC4L, SLC7A11, PCDH18, PCDH10, SLC7A11-AS1, LINC00616) 0.41283028407581 4 0.0468828326789242 0.502791387990367 286 0.209264462638244 2 1 1 -7.01408952193801 LTS-039 chr4 139089211 140812117 1722907 * c(LINC00499, ELF2, SLC7A11, NOCT, MGST2, NDUFC1, MAML3, SLC7A11-AS1, NAA15, SETD7, RAB33B, MGARP) 0.317872333842113 8 0.136920206168202 0.790620307048077 933 0.369304974794604 4 3 1 -6.85399869000742 LTS-039 chr4 140812118 141054153 242036 * MAML3 NA 0 NA 1.828 1 NA NA NA NA NA LTS-039 chr4 141054154 141075256 21103 * MAML3 NA 0 NA 1.77997224174706 43 0.94883270069554 9 NA NA -5.76441100808956 LTS-039 chr4 141075257 141206216 130960 * c(SCOC-AS1, SCOC) NA 0 NA 0.958 1 NA NA NA NA NA LTS-039 chr4 141206217 144616706 3410490 * c(SCOC-AS1, CLGN, MGAT4D, FREM3, TBC1D9, GAB1, ELMOD2, ZNF330, IL15, GUSBP5, RNF150, SCOC, TNRC18P1, UCP1, USP38, SMARCA5, INPP4B) 0.349606776756941 32 0.11013862233128 0.726766744518571 1779 0.739148768222611 3 2 1 -6.75760423611047 LTS-039 chr4 144616707 145568078 951372 * c(FREM3, GYPA, GYPB, GYPE, HHIP, HHIP-AS1) 0.244984989332682 6 0.152335703847347 0.520806177670021 291 0.310852261759239 2 2 0 -6.91604655170505 LTS-039 chr4 145568079 145573770 5692 * HHIP NA 0 NA 0.923 1 NA NA NA NA NA LTS-039 chr4 145573771 147247259 1673489 * c(LINC01095, ANAPC10, LSM6, ZNF827, MMAA, SMAD1, OTUD4, ABCE1, HHIP, C4orf51, SLC10A7) 0.313191678226104 10 0.134984772803783 0.821206352972681 1087 0.519491614616302 4 3 1 -6.76620728446157 LTS-039 chr4 147247260 147362794 115535 * SLC10A7 NA 0 NA 0.745 1 NA NA NA NA NA LTS-039 chr4 147362795 151850227 4487433 * c(MIR4799, MAB21L2, DCLK2, EDNRA, NR3C2, POU4F2, TMEM184C, ARHGAP10, TTC29, SLC10A7, PRMT9, LRBA) 0.368946524327775 21 0.0998510557447107 0.715055441712553 1340 0.327791106214902 3 2 1 -6.73402966309239 LTS-039 chr4 151850228 151935531 85304 * LRBA NA 0 NA 1.758 1 NA NA NA NA NA LTS-039 chr4 151935532 152024257 88726 * c(RPS3A, LRBA) NA 0 NA 1.73855843929248 43 0.404181439033158 9 NA NA -5.76473186772342 LTS-039 chr4 152024258 152024969 712 * RPS3A NA 0 NA 0.871 1 NA NA NA NA NA LTS-039 chr4 152024970 153864374 1839405 * c(MIR3140, SH3D19, TIGD4, TMEM154, ARFIP1, PRSS48, GATB, DKFZP434I0714, FBXW7, RPS3A, FAM160A1, FHDC1, SNORD73A) 0.38848601246358 7 0.0481678612473385 0.72303773735364 853 0.279643951100474 3 2 1 -6.81372389199124 LTS-039 chr4 153864375 154236728 372354 * c(TRIM2, ANXA2P1, FHDC1) 0.360455767380346 8 0.153521927237959 1.10906363155072 242 0.502874761431701 6 4 2 -6.74688714801539 LTS-039 chr4 154236729 154236927 199 * TRIM2 NA 0 NA 0.799 1 NA NA NA NA NA LTS-039 chr4 154236928 155457133 1220206 * c(KIAA0922, TRIM2, RNF175, PLRG1, DCHS2, SFRP2, TLR2, MND1) 0.380839906931886 25 0.0544826272004817 0.771384309797936 895 0.305670121947156 3 2 1 -6.80319094440079 LTS-039 chr4 155457134 155471580 14447 * PLRG1 NA 0 NA 1.1706423305411 95 0.412784541788485 6 NA NA -5.76464335391252 LTS-039 chr4 155471581 155484046 12466 * PLRG1 NA 0 NA 0.56 1 NA NA NA NA NA LTS-039 chr4 155484047 169137975 13653929 * c(MIR3688-1, LINC01207, APELA, MIR3688-2, ANXA10, KLHL2, CPE, CTSO, FAM218A, C4orf45, TRIM60, RBM46, C4orf46, TMEM192, ETFDH, FGA, FGB, FGG, ANP32C, GK3P, GLRB, GRIA2, GUCY1A3, GUCY1B3, LOC340017, TRIM61, NPY1R, NPY2R, NPY5R, SPOCK3, FAM198B, ASIC5, PPID, MARCH1, TMEM144, TMA16, DDX60, PDGFC, FSTL5, FNIP2, RXFP1, MSMO1, MIR578, TDO2, TLL1, MAP9, TKTL2, LRAT, NAF1, RAPGEF2) 0.35631225293247 81 0.0944622956985589 0.634586109672343 4046 0.385752683704337 3 2 1 -7.39000765667423 LTS-039 chr4 169137976 169138079 104 * DDX60 NA 0 NA 1.381 1 NA NA NA NA NA LTS-039 chr4 169138080 169911432 773353 * c(PALLD, DDX60, CBR4, DDX60L) 0.2718562371192 15 0.0818027825816166 1.00987148775319 706 0.670381952123015 5 4 1 -6.78912839926025 LTS-039 chr4 169911433 169922375 10943 * CBR4 NA 0 NA 2.591 1 NA NA NA NA NA LTS-039 chr4 169922376 170190498 268123 * c(SH3RF1, CBR4) 0.321 1 NA 1.52965726685868 168 1.03755406259768 8 8 0 -5.76483650251332 LTS-039 chr4 170190499 170314463 123965 * c(NEK1, SH3RF1) NA 0 NA 0.716 1 NA NA NA NA NA LTS-039 chr4 170314464 174245031 3930568 * c(LOC100506085, LOC100506122, CLCN3, GALNTL6, NEK1, AADAT, GALNT7, HPF1, MFAP3L) 0.32609228442527 10 0.127395665371925 0.828565053248181 862 0.428862301505139 4 3 1 -6.83137725324886 LTS-039 chr4 174245032 174298646 53615 * c(HMGB2, GALNT7, SAP30) NA 0 NA 2.17832594868821 53 0.561670788581718 11 NA NA -5.7644219641564 LTS-039 chr4 174298647 174309284 10638 * SAP30 NA 0 NA 0.459 1 NA NA NA NA NA LTS-039 chr4 174309285 175565245 1255961 * c(MIR4276, SCRG1, FBXO8, HPGD, HAND2-AS1, GLRA3, CEP44, HAND2) 0.317231948342941 15 0.112709994486482 0.732288981817086 569 0.997308900421515 4 3 1 -6.78050431359997 LTS-039 chr4 175565246 175604008 38763 * GLRA3 0.357 1 NA 0.624703901392985 19 0.126636168997035 3 3 0 -5.78872629288887 LTS-039 chr4 175604009 175897243 293235 * c(ADAM29, GLRA3) NA 0 NA 0.660166979882238 56 0.277791033767396 3 NA NA -5.77704973754694 LTS-039 chr4 175897244 184237084 8339841 * c(MIR1305, ADAM29, WDR17, SPATA4, ASB5, WWC2-AS2, DCTD, AGA, GPM6A, LINC01098, FAM92A1P2, NEIL3, TENM3, SPCS3, LINC00290, VEGFC, WWC2, LOC90768) 0.436150606104701 26 0.057611270264927 0.455127904532273 1366 0.22442283228423 2 1 1 -8.47356935444096 LTS-039 chr4 184237085 184431843 194759 * c(CLDN24, ING2, LOC389247, CLDN22, CDKN2AIP, WWC2) 0.382218023372903 5 0.202136092769203 0.785753932911384 239 0.456599122566608 3 2 1 -6.74039070633938 LTS-039 chr4 184431844 184562396 130553 * c(RWDD4, ING2) NA 0 NA 0.297721062683555 39 0.12088597252608 1 NA NA -5.90302490507064 LTS-039 chr4 184562397 184562412 16 * RWDD4 NA 0 NA 0.437 1 NA NA NA NA NA LTS-039 chr4 184562413 186381165 1818753 * c(MIR3945, LINC01093, ENPP6, RWDD4, PRIMPOL, ACSL1, CCDC110, SLC25A4, ANKRD37, IRF2, HELT, C4orf47, UFSP2, LRP2BP, STOX2, CFAP97, TRAPPC11, SLED1, LOC728175, MIR3945HG, CENPU, CASP3, SNX25) 0.435787750933378 10 0.0649834166879862 0.620273496533426 1512 0.323901983378255 2 1 1 -6.97913966537914 LTS-039 chr4 186381166 186381208 43 * CCDC110 NA 0 NA 0.353 1 NA NA NA NA NA LTS-039 chr4 186381209 187628081 1246873 * c(F11, FAT1, CCDC110, FAM149A, PDLIM3, CYP4V2, F11-AS1, KLKB1, MTNR1A, FLJ38576, TLR3, SORBS2) 0.435640997997705 32 0.0540475354545392 0.445155906197125 1134 0.194955858130679 2 1 1 -7.29271663625694 LTS-039 chr4 187628082 190396407 2768326 * c(ZFP42, TRIML2, FAT1, LOC339975, TRIML1, LINC01060) 0.354533667042349 5 0.100049987506246 0.357312737270107 298 0.1930847335647 1 1 0 -7.42192312976465 LTS-039 chr4 190396408 190426406 29999 * character(0) NA 0 NA 0.882 1 NA NA NA NA NA LTS-039 chr4 190426407 190946065 519659 * FRG1 0.299395157163445 9 0.109412065148228 0.866535729768946 84 0.430470432069183 4 3 1 -6.73457906455752 LTS-039 chr4 190946066 190981567 35502 * character(0) NA 0 NA 0.454920032279529 19 0.826421741447333 2 NA NA -5.7651519720563 LTS-039 chr5 140347 163205 22859 * PLEKHG4B 0.43 1 NA 0.818461565319248 69 0.276189790744533 4 4 0 -5.76573112074347 LTS-039 chr5 163206 483485 320280 * c(PDCD6, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, AHRR, SDHA, SLC9A3) 0.326817254736898 61 0.0841223510451009 0.85067320075775 838 0.429141971213609 4 3 1 -6.80705541456191 LTS-039 chr5 483486 883569 400084 * c(MIR4456, LOC100996325, TPPP, CEP72, SLC9A3, BRD9, ZDHHC11) 0.354622807388868 35 0.103426001639462 0.681364719561618 482 0.409430553744538 3 2 1 -6.75091724761558 LTS-039 chr5 883570 883964 395 * BRD9 NA 0 NA 1.046 1 NA NA NA NA NA LTS-039 chr5 883965 1160540 276576 * c(LOC100506688, MIR4635, SLC12A7, BRD9, NKD2, TRIP13) 0.333848322041604 12 0.123885577706351 0.974452936067458 425 0.712535725583689 6 4 2 -6.77082124417289 LTS-039 chr5 1160541 1201693 41153 * character(0) NA 0 NA 0.556 1 NA NA NA NA NA LTS-039 chr5 1201694 1474250 272557 * c(MIR4457, SLC6A19, SLC6A18, SLC6A3, TERT, LPCAT1, CLPTM1L) 0.396124851418094 18 0.0564955895091549 0.568791462580066 621 0.241805323830982 2 1 1 -6.96301707382145 LTS-039 chr5 1474251 1474623 373 * LPCAT1 NA 0 NA 1.098 1 NA NA NA NA NA LTS-039 chr5 1474624 1814863 340240 * c(MIR4277, NDUFS6, MRPL36, SDHAP3, LOC728613, LPCAT1) 0.361404057350933 5 0.0677731510260516 0.908356458081331 104 0.477093321319788 3 2 1 -6.79855545893883 LTS-039 chr5 1814864 1815874 1011 * NDUFS6 NA 0 NA 0.263 1 NA NA NA NA NA LTS-039 chr5 1815875 5320228 3504354 * c(C5orf38, IRX2, ADAMTS16, LINC01019, LINC01020, NDUFS6, IRX4, IRX1) 0.368602723848819 13 0.0709064931387159 0.497667257733399 491 0.279885139373927 2 1 1 -7.27047468338536 LTS-039 chr5 5320229 7851343 2531115 * c(MIR4278, MIR4454, ADCY2, PAPD7, UBE2QL1, C5orf49, ADAMTS16, ICE1, LINC01018, FLJ33360, LOC442132, NSUN2, SRD5A1, MED10) 0.356211612299811 21 0.0722629457836679 0.689825381454552 905 0.29214293742223 3 2 1 -6.77510500269325 LTS-039 chr5 7851344 8461148 609805 * c(MIR4458HG, MIR4458, C5orf49, MTRR, LOC729506, FASTKD3) 0.345767576742147 6 0.0740308494255379 1.05036635633873 191 0.36857099468175 6 4 2 -6.82451817518848 LTS-039 chr5 9035160 10226561 1191402 * c(SNORD123, SNHG18, MIR4636, FAM173B, LOC285692, TAS2R1, SEMA5A) 0.386188620922853 4 0.245065297420912 0.572764521813436 328 0.299310139402453 2 1 1 -6.79863131712155 LTS-039 chr5 10226562 10679540 452979 * c(ROPN1L-AS1, MARCH6, FAM173B, CMBL, DAP, CCT5, ANKRD33B, ROPN1L) 0.347461025149343 10 0.0467476677968479 0.946055283300155 482 0.566566841179948 6 4 2 -6.81410353674387 LTS-039 chr5 10679541 13944681 3265141 * c(CTNND2, DAP, DNAH5, LINC01194) 0.360682307364047 23 0.108472961604307 0.580325008680634 692 0.270215026570463 2 1 1 -7.17947850941238 LTS-039 chr5 13944682 14143929 199248 * TRIO NA 0 NA 1.399 1 NA NA NA NA NA LTS-039 chr5 14143930 14715128 571199 * c(LOC100130744, FAM105A, ANKH, TRIO, OTULIN) 0.390618255476649 14 0.088365002271112 0.742816654720053 837 0.272952479781127 3 2 1 -6.77072579396268 LTS-039 chr5 14715129 14716799 1671 * c(LOC100130744, ANKH) NA 0 NA 1.104 1 NA NA NA NA NA LTS-039 chr5 14716800 14871904 155105 * c(MIR4637, ANKH) 0.402110242674377 3 0.0270246800782791 1.3089482342225 72 0.614026469528546 5 3 2 -6.76297153147306 LTS-039 chr5 15500513 16453210 952698 * c(FBXL7, MARCH11, ZNF622) 0.193325909419153 2 0.282842712474619 0.458722608080566 159 0.335790617300876 2 2 0 -6.84735221780609 LTS-039 chr5 16453211 16453216 6 * ZNF622 NA 0 NA 0.726 1 NA NA NA NA NA LTS-039 chr5 16453217 16936261 483045 * c(MYO10, FAM134B, ZNF622) 0.367315687767624 11 0.0660951105329557 0.931887352542665 446 0.36074980657028 3 2 1 -6.89334971310753 LTS-039 chr5 16936262 16936265 4 * MYO10 NA 0 NA 0.623 1 NA NA NA NA NA LTS-039 chr5 16936266 31326623 14390358 * c(CDH6, CDH9, CDH10, CDH12, CDH18, BASP1, LOC285696, LOC340107, LOC401177, MYO10, PMCHL1, PRDM9, LINC01021, GUSBP1, LSP1P3) 0.389059838534952 16 0.110292338809185 0.510999418821435 696 0.231423749689898 2 1 1 -7.0414224558418 LTS-039 chr5 31326624 33936666 2610043 * c(CDH6, MIR4279, SUB1, PDZD2, DROSHA, LOC340113, NPR3, RXFP3, ZFR, MTMR12, C5orf22, GOLPH3, TARS, ADAMTS12) 0.344675610364299 41 0.101063792942391 0.814546999172412 1732 0.599764058316584 3 2 1 -6.85287348313204 LTS-039 chr5 33936667 33936766 100 * RXFP3 NA 0 NA 0.25 1 NA NA NA NA NA LTS-039 chr5 33936767 33951438 14672 * c(SLC45A2, RXFP3) 0.268587405005668 3 0.264975470562843 0.443233354956717 88 0.345858183317393 1 1 0 -6.74291932239821 LTS-039 chr5 33951439 33951446 8 * SLC45A2 NA 0 NA 0.615 1 NA NA NA NA NA LTS-039 chr5 33951447 34905654 954208 * c(C1QTNF3, TTC23L, AMACR, RAI14, SLC45A2, RAD1) 0.307413565646702 9 0.122043025200132 0.781390603035509 467 0.352126482700918 4 3 1 -6.81642252828965 LTS-039 chr5 34905655 34949857 44203 * c(DNAJC21, BRIX1, RAD1) 0.30132125849016 2 0.0558614357137372 1.50361354957396 205 0.721643231760321 4 3 1 -6.74961766524096 LTS-039 chr5 34949858 34950299 442 * DNAJC21 NA 0 NA 0.768 1 NA NA NA NA NA LTS-039 chr5 34950300 36101263 1150964 * c(UGT3A1, CAPSL, DNAJC21, UGT3A2, IL7R, PRLR, AGXT2, SPEF2) 0.369297224272479 42 0.106074648292855 0.626863417647368 1229 0.317739553139076 3 2 1 -6.84038331250523 LTS-039 chr5 36101264 39122504 3021241 * c(MIR3650, EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NADK2, RANBP3L, RICTOR, FYB, NIPBL, GDNF, LIFR, WDR70, NIPBL-AS1, SKP2, SLC1A3, C5orf42, MIR580, OSMR, LMBRD2, NUP155) 0.365041293683992 20 0.0642087672321599 0.782984229866221 2555 0.422353867589046 3 2 1 -6.83080667293434 LTS-039 chr5 39122505 39124285 1781 * FYB NA 0 NA 0.458 1 NA NA NA NA NA LTS-039 chr5 39124286 40767786 1643501 * c(DAB2, TTC33, FYB, PRKAA1, PTGER4, C9) 0.326420836508408 8 0.197530422611665 0.57637383551096 481 0.28345530265259 2 1 1 -6.97792706018197 LTS-039 chr5 40767787 40768495 709 * PRKAA1 NA 0 NA 3.082 1 NA NA NA NA NA LTS-039 chr5 40768496 40843469 74974 * c(LOC100506548, PRKAA1, RPL37, SNORD72, CARD6) 0.390142676083758 3 0.0369368831025756 1.15864094354108 219 0.801166188956244 8 5 3 -6.75359738188815 LTS-039 chr5 40843470 41853732 1010263 * c(MROH2B, PLCXD3, OXCT1, C6, C7, CARD6) 0.388304479491955 4 0.0712945766988392 0.539176024149944 783 0.236971673124437 2 1 1 -6.94063443729567 LTS-039 chr5 41853733 41861350 7618 * OXCT1 NA 0 NA 0.863 1 NA NA NA NA NA LTS-039 chr5 41861351 41930038 68688 * c(FBXO4, C5orf51, OXCT1) NA 0 NA 0.995945248925152 175 0.478811145756333 5 NA NA -5.76538806410797 LTS-039 chr5 41930039 41934071 4033 * FBXO4 NA 0 NA 0.342 1 NA NA NA NA NA LTS-039 chr5 41934072 42804949 870878 * c(CCDC152, FBXO4, GHR, SELENOP) 0.481 1 NA 0.586951812828527 262 0.555345893111297 2 2 0 -5.78150266429124 LTS-039 chr5 42804950 42806971 2022 * SELENOP NA 0 NA 1.464 1 NA NA NA NA NA LTS-039 chr5 42806972 43139496 332525 * c(LOC100132356, LOC100506639, LOC153684, ANXA2R, SELENOP, LOC648987, ZNF131) 0.371467495650687 2 0.0834386001800126 1.59249765729594 109 1.0494943621773 8 5 3 -6.74816612612678 LTS-039 chr5 43139497 43161315 21819 * ZNF131 NA 0 NA 0.533 1 NA NA NA NA NA LTS-039 chr5 43161316 43289926 128611 * c(NIM1K, HMGCS1, ZNF131) 0.339184016662353 5 0.0888183539590776 0.602084947763197 120 0.267531201745821 3 2 1 -6.83946108440082 LTS-039 chr5 43289927 43289932 6 * HMGCS1 NA 0 NA 1.014 1 NA NA NA NA NA LTS-039 chr5 43289933 43645644 355712 * c(NNT-AS1, PAIP1, NNT, HMGCS1, C5orf34, CCL28, TMEM267) 0.410342216026206 10 0.0457937404747272 0.917561571558545 426 0.564430257930406 5 3 2 -6.75229836093402 LTS-039 chr5 43645645 43647932 2288 * NNT NA 0 NA 0.299 1 NA NA NA NA NA LTS-039 chr5 43647933 44809162 1161230 * c(MRPS30, FGF10, NNT) 0.355181953866893 2 0.135057395206631 0.584882536205793 184 0.239598174744584 2 1 1 -7.02716075520027 LTS-039 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 0.697094551761597 155 0.392248201114746 3 NA NA -5.76580839455115 LTS-039 chr5 49692017 52084380 2392364 * c(EMB, ISL1, ITGA1, PELO, LOC642366, PARP8) NA 0 NA 0.417922180616092 431 0.253206559590105 1 NA NA -6.39120563883563 LTS-039 chr5 52084381 52095672 11292 * c(ITGA1, PELO) NA 0 NA 0.858 1 NA NA NA NA NA LTS-039 chr5 52095673 52099848 4176 * c(ITGA1, PELO) NA 0 NA 0.902070860772698 81 0.463379371547017 4 NA NA -5.76441168859302 LTS-039 chr5 52099849 52145154 45306 * ITGA1 NA 0 NA 0.569 1 NA NA NA NA NA LTS-039 chr5 52145155 52193287 48133 * ITGA1 0.485 1 NA 0.424190540232534 33 0.160592835183022 1 1 0 -5.80512885206693 LTS-039 chr5 52193288 53181399 988112 * c(FST, LOC257396, ITGA1, ITGA2, MOCS2, NDUFS4, ARL15) 0.427003035703446 28 0.0470187961964914 0.502336434525902 596 0.219235232500081 2 1 1 -6.77392711465046 LTS-039 chr5 53181400 54275309 1093910 * c(ESM1, SNX18, ARL15, MIR581, HSPB3) 0.435543573722778 13 0.131646233403128 0.649630701120612 286 0.362544712255257 3 2 1 -6.91406383871638 LTS-039 chr5 54275310 54277791 2482 * ESM1 NA 0 NA 0.436 1 NA NA NA NA NA LTS-039 chr5 54277792 54462563 184772 * c(ESM1, CDC20B, GZMA, GZMK, GPX8) 0.327852604877083 5 0.202423565821769 0.425749083808811 242 0.227204470776339 1 1 0 -6.918480218375 LTS-039 chr5 54462564 54462822 259 * c(CDC20B, GPX8) NA 0 NA 0.815 1 NA NA NA NA NA LTS-039 chr5 54462823 54711981 249159 * c(MIR449C, CCNO, CDC20B, SKIV2L2, MCIDAS, GPX8, DHX29, MIR449A, MIR449B) 0.46055281348558 2 0.0233345237791561 0.791431144893602 379 0.300727543134254 4 2 2 -7.60627034231125 LTS-039 chr5 54711982 54718654 6673 * SKIV2L2 NA 0 NA 0.217 1 NA NA NA NA NA LTS-039 chr5 54718655 55231109 512455 * c(MIR5687, IL31RA, SLC38A9, SKIV2L2, IL6ST, RNF138P1, DDX4, PLPP1) 0.455684469703995 10 0.0373755713445739 0.461936466983852 448 0.199243511875315 2 1 1 -7.1358274744217 LTS-039 chr5 55231110 57913379 2682270 * c(PLK2, RAB3C, SETD9, MIER3, GAPT, ACTBL2, IL6ST, MAP3K1, FLJ31104, GPBP1, ANKRD55) 0.465513543829212 19 0.034904380663087 0.610474498460445 1111 0.276008766566565 2 1 1 -7.66478578702995 LTS-039 chr5 57913380 57913429 50 * RAB3C NA 0 NA 0.344 1 NA NA NA NA NA LTS-039 chr5 57913430 58147753 234324 * RAB3C 0.2 1 NA 0.300645027483177 31 0.189761287507645 1 1 0 -5.8543413875816 LTS-039 chr5 58147754 58272116 124363 * PDE4D 0.260326308568914 27 0.0854371030378405 0.349063914930144 319 0.242738591811387 1 1 0 -6.7591157579015 LTS-039 chr5 58272117 58452915 180799 * PDE4D 0.422 1 NA 0.379815695477119 63 0.205033750172203 1 1 0 -5.78122781602076 LTS-039 chr5 58452916 58453225 310 * PDE4D NA 0 NA 0.267920664116837 7 0.0581045855087432 1 NA NA -5.76835620237051 LTS-039 chr5 58453226 58475378 22153 * PDE4D NA 0 NA 0.612 1 NA NA NA NA NA LTS-039 chr5 58475379 61681505 3206127 * c(ERCC8, PART1, C5orf64, KIF2A, PDE4D, DEPDC1B, ZSWIM6, SMIM15, ELOVL7, NDUFAF2) 0.409690836145047 19 0.113967959999435 0.557749800865933 800 0.315410893144788 2 1 1 -6.80044760966029 LTS-039 chr5 61681506 61681613 108 * KIF2A NA 0 NA 0.716 1 NA NA NA NA NA LTS-039 chr5 61681614 61874685 193072 * c(LRRC70, IPO11-LRRC70, DIMT1, KIF2A, IPO11) 0.41776641729801 8 0.0656080080042499 0.739207962908492 239 0.359453833086141 4 2 2 -6.78761717989257 LTS-039 chr5 61874686 61875185 500 * c(LRRC70, IPO11-LRRC70, IPO11) NA 0 NA 0.304 1 NA NA NA NA NA LTS-039 chr5 61875186 63626216 1751031 * c(LRRC70, IPO11-LRRC70, RNF180, HTR1A, IPO11) 0.463617252006935 2 0.0318198051533946 0.385773123040814 176 0.205405408128198 2 1 1 -9.15286557602195 LTS-039 chr5 63626217 68850480 5224264 * c(FAM159B, LOC100303749, OCLN, CDK7, CWC27, ADAMTS6, SREK1, MARVELD2, CCDC125, PPWD1, RNF180, SREK1IP1, TRIM23, MAST4, RGS7BP, CD180, PIK3R1, SGTB, ERBIN, NLN, RAD17, CENPK, SLC30A5, CENPH, TAF9, TRAPPC13, CCNB1, MRPS36) 0.404305235758889 43 0.120640419188476 0.611391217938527 3224 0.397264162425069 2 1 1 -7.13444102221488 LTS-039 chr5 68850481 68862324 11844 * c(OCLN, GTF2H2C) NA 0 NA 0.3 1 NA NA NA NA NA LTS-039 chr5 68862325 70265493 1403169 * c(GUSBP9, NA, SMA4, SMA5, LOC441081, NAIP, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.294 1 NA 0.241507654982717 91 0.409878733369244 0 0 0 -6.32869127595167 LTS-039 chr5 70265494 70307096 41603 * c(GUSBP9, NAIP) NA 0 NA 0.565 1 NA NA NA NA NA LTS-039 chr5 70307097 71524242 1217146 * c(GUSBP9, MIR4803, MRPS27, GTF2H2, MAP1B, NAIP, PMCHL2, BDP1, MCCC2, LOC647859, CARTPT) 0.443693614727577 15 0.0463576161102852 0.520628919061499 843 0.259475724611315 2 1 1 -6.78388543186083 LTS-039 chr5 71524243 71528183 3941 * MRPS27 NA 0 NA 0.679 1 NA NA NA NA NA LTS-039 chr5 71528184 73932324 2404141 * c(MIR4804, FCHO2, TMEM171, TMEM174, ZNF366, MRPS27, TNPO1, ANKRA2, ARHGEF28, BTF3, PTCD2, UTP15, ENC1) 0.427684645861127 38 0.0831519714475777 0.729218796360486 1086 0.376240413861607 3 2 1 -7.00479603243216 LTS-039 chr5 73932325 78808871 4876547 * c(NCRUPAR, COL4A3BP, LHFPL2, NSA2, IQGAP2, JMY, POC5, CRHBP, S100Z, F2R, F2RL1, F2RL2, SV2C, OTP, BHMT2, ANKRD31, FAM169A, DMGDH, HEXB, HMGCR, ARSB, GCNT4, POLK, AGGF1, WDR41, BHMT, SNORA47, TBCA, ZBED3-AS1, ANKDD1B, ZBED3, GFM2, ENC1, AP3B1, PDE8B, HOMER1, SCAMP1) 0.4224365031204 75 0.0883203770882406 0.561007971776578 3564 0.400662637000933 2 1 1 -6.79365038967762 LTS-039 chr5 78808872 79024816 215945 * c(PAPD4, CMYA5, HOMER1) 0.416738068217122 3 0.0767419919817914 0.817735507954688 133 0.350132622889243 4 2 2 -6.76072708801714 LTS-039 chr5 79024817 79059111 34295 * CMYA5 NA 0 NA 0.409243868545812 243 0.102449135467102 1 NA NA -5.81142449991179 LTS-039 chr5 79059112 79084795 25684 * CMYA5 NA 0 NA 0.822 1 NA NA NA NA NA LTS-039 chr5 79084796 81571156 2486361 * c(CKMT2-AS1, MTRNR2L2, CKMT2, ACOT12, FAM151B, DHFR, CMYA5, SSBP2, SERINC5, RNU5E-1, ANKRD34B, MTX3, CRSP8P, MSH3, RASGRF2, RPS23, LOC644936, THBS4, ATG10, ZCCHC9, SPZ1, ZFYVE16) 0.42099766888553 40 0.0659702924594054 0.593213624035715 1711 0.285349670858615 2 1 1 -6.96435850595676 LTS-039 chr5 81571157 81571281 125 * RPS23 NA 0 NA 1.039 1 NA NA NA NA NA LTS-039 chr5 81571282 81574460 3179 * RPS23 NA 0 NA 1.43162774211718 43 0.406881620840301 7 NA NA -5.76441014716952 LTS-039 chr5 81574461 81600722 26262 * ATP6AP1L NA 0 NA 0.713 1 NA NA NA NA NA LTS-039 chr5 81600723 86410845 4810123 * c(MIR4280, MIR3607, MIR3977, EDIL3, COX7C, HAPLN1, VCAN, TMEM167A, NBPF22P, SCARNA18, XRCC4, ATP6AP1L) 0.416246641200733 7 0.0707174121482989 0.431848602127797 795 0.179813373486873 2 1 1 -9.21215558615308 LTS-039 chr5 86410846 86514113 103268 * character(0) NA 0 NA 0.97 1 NA NA NA NA NA LTS-039 chr5 86514114 89807841 3293728 * c(MIR3660, TMEM161B-AS1, POLR3G, CETN3, MBLAC2, TMEM161B, MIR9-2, MEF2C, RASA1, LINC00461, CCNH) 0.417672517378408 11 0.0385404156226115 0.595926187203494 847 0.311070337722406 2 1 1 -7.06265736946728 LTS-039 chr5 89807842 90460092 652251 * c(POLR3G, LYSMD3, ADGRV1) 0.321150198874336 4 0.220842892874852 0.446830385069776 747 0.211119651921336 2 1 1 -7.12675683163395 LTS-039 chr5 90460093 90664545 204453 * ARRDC3 NA 0 NA 1.012 1 NA NA NA NA NA LTS-039 chr5 90664546 92919457 2254912 * c(ARRDC3-AS1, NR2F1-AS1, ARRDC3, NR2F1) NA 0 NA 1.09556292037443 102 0.642629957502114 5 NA NA -5.76593372185834 LTS-039 chr5 92919458 96072042 3152585 * c(MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, PCSK1, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.438101459533996 32 0.0326565707462254 0.476552596247404 1889 0.208157726826941 2 1 1 -7.23228468711506 LTS-039 chr5 96072043 96073534 1492 * CAST NA 0 NA 0.552 1 NA NA NA NA NA LTS-039 chr5 96073535 101570519 5496985 * c(LOC100133050, LOC100289230, CHD1, LIX1, RGMB, FAM174A, SLCO4C1, LNPEP, RGMB-AS1, ERAP1, RIOK2, ERAP2, ST8SIA4, CAST) 0.440769251946724 55 0.0436074237648523 0.589371712018496 1491 0.268992813013782 2 1 1 -7.22704994662991 LTS-039 chr5 101570520 101631878 61359 * SLCO4C1 0.420158651681919 2 0.029698484809835 0.319011860881174 106 0.232445445589287 2 1 1 -6.97922547920382 LTS-039 chr5 101631879 105879502 4247624 * c(SLCO6A1, PPIP5K2, SLCO4C1, PAM, GIN1, NUDT12, C5orf30, RAB9BP1) 0.432409127076205 12 0.0696573866517508 0.494180736071469 685 0.218803022199087 2 1 1 -6.99359333884161 LTS-039 chr5 106712574 107195571 482998 * c(EFNA5, FBXL17) 0.440087494892619 6 0.0419952378252582 0.911846672251553 138 0.439756608352936 4 2 2 -6.76364252193452 LTS-039 chr5 107195572 110098498 2902927 * c(LOC100289673, LINC01023, FER, MAN2A1, TMEM232, FBXL17, SLC25A46, PJA2) 0.415427824990932 23 0.105957091024338 0.505880677683404 928 0.239409720597699 2 1 1 -6.8148332871488 LTS-039 chr5 110098499 110285659 187161 * character(0) NA 0 NA 0.66 1 NA NA NA NA NA LTS-039 chr5 110285660 110464854 179195 * c(WDR36, TSLP) NA 0 NA 0.759726599860029 282 0.348526399023784 3 NA NA -5.7682551954746 LTS-039 chr5 110464855 112927860 2463006 * c(STARD4-AS1, NREP-AS1, EPB41L4A-AS1, STARD4, WDR36, DCP2, APC, MCC, EPB41L4A-AS2, EPB41L4A, YTHDC2, SNORA13, SRP19, REEP5, CAMK4, TSSK1B, NREP) 0.44368466603003 18 0.055441808390844 0.566048221068514 1841 0.270262882344754 2 1 1 -6.84834668031788 LTS-039 chr5 112927861 112928956 1096 * YTHDC2 NA 0 NA 0.318 1 NA NA NA NA NA LTS-039 chr5 112928957 114548341 1619385 * c(KCNN2, PGGT1B, TRIM36, YTHDC2) 0.412606353471842 3 0.0724522831478301 0.422619545281893 274 0.259537003690401 2 1 1 -7.43890253383605 LTS-039 chr5 114548342 114552659 4318 * PGGT1B NA 0 NA 0.706 1 NA NA NA NA NA LTS-039 chr5 114552660 115781241 1228582 * c(TMED7-TICAM2, CDO1, AP3S1, CCDC112, LVRN, TICAM2, TMED7, COMMD10, PGGT1B, FEM1C, SEMA6A, ARL14EPL, ATG12) 0.374805012164764 19 0.111600635098488 0.661759721755647 846 0.361668376895266 3 2 1 -6.76285335654422 LTS-039 chr5 115781242 118867114 3085873 * c(DMXL1, TNFAIP8, DTWD2, HSD17B4, SEMA6A, LINC00992) 0.438277983362338 23 0.0595821086231781 0.540521659039031 846 0.271244908781636 2 1 1 -6.75103633769596 LTS-039 chr5 118867115 121188505 2321391 * c(HSD17B4, FAM170A, PRR16, FTMT) 0.348170268214615 2 0.0473761543394987 0.353498452357468 141 0.216630144611051 1 1 0 -8.80796717852101 LTS-039 chr5 121188506 121297604 109099 * FTMT NA 0 NA 0.523 1 NA NA NA NA NA LTS-039 chr5 121297605 127595039 6297435 * c(LOC100505841, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, FBN2, SNX24, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, SNCAIP) 0.409670377208987 52 0.114916054022476 0.607936800462434 2428 0.34945522877272 2 1 1 -7.27479418328309 LTS-039 chr5 127595040 127595169 130 * FBN2 NA 0 NA 0.416 1 NA NA NA NA NA LTS-039 chr5 127595170 131554412 3959243 * c(KIAA1024L, MIR4633, MIR4460, CSF2, ADAMTS19, FBN2, ACSL6, SLC27A6, HINT1, CHSY3, IL3, ISOC1, RAPGEF6, CDC42SE2, MEIKIN, P4HA2, LYRM7, FNIP1) 0.430582828084379 42 0.0636326428841213 0.511983330398371 1883 0.26400987208526 2 1 1 -6.7770394618994 LTS-039 chr5 131554413 131593389 38977 * c(PDLIM4, P4HA2) NA 0 NA 0.893 1 NA NA NA NA NA LTS-039 chr5 131593390 132224876 631487 * c(MIR3936, RAD50, KIF3A, LEAP2, SOWAHA, SHROOM1, SEPT8, GDF9, UQCRQ, AFF4, IL4, IL5, IL13, IRF1, C5orf56, LOC553103, CCNI2, SLC22A4, SLC22A5, PDLIM4) 0.440448473435924 54 0.0751744140164151 0.674427454505286 1517 0.323172882430443 2 1 1 -6.9443160497784 LTS-039 chr5 132224877 132227510 2634 * AFF4 NA 0 NA 0.428 1 NA NA NA NA NA LTS-039 chr5 132227511 136975687 4748177 * c(VTRNA2-1, MIR1289-2, MIR3661, MIR4461, C5orf66, SEC24A, C5orf24, DCANP1, SLC25A48, FSTL4, JADE2, FBXL21, KLHL3, AFF4, HSPA4, C5orf66-AS2, LOC340074, CATSPER3, IL9, LOC389332, LECT2, SMAD5, NEUROG1, TIFAB, SAR1B, CDKL3, PITX1, ZCCHC10, PPP2CA, C5orf15, TRPC7, SKP1, SPOCK1, TCF7, TGFBI, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, CDKN2AIPNL, CXCL14, H2AFY, SMAD5-AS1, DDX46) 0.4319386069942 42 0.0609718285703342 0.597003976678222 3286 0.285547106032178 2 1 1 -7.1810637091861 LTS-039 chr5 136975688 137071810 96123 * c(MIR874, KLHL3, MYOT) NA 0 NA 0.533410460755517 71 0.18748614865001 2 NA NA -5.76445006252461 LTS-039 chr5 137071811 137087082 15272 * c(HNRNPA0, MYOT) NA 0 NA 2.412 1 NA NA NA NA NA LTS-039 chr5 137087083 137090076 2994 * c(HNRNPA0, MYOT) NA 0 NA 1.13981579052171 65 0.492609062504476 5 NA NA -5.76443782165592 LTS-039 chr5 137090077 137143885 53809 * c(NPY6R, MYOT) NA 0 NA 0.275 1 NA NA NA NA NA LTS-039 chr5 137143886 137213369 69484 * c(NPY6R, MYOT) NA 0 NA 0.325125014982764 41 0.0950423653930824 1 NA NA -5.79000787925004 LTS-039 chr5 137213370 137216414 3045 * MYOT NA 0 NA 0.792 1 NA NA NA NA NA LTS-039 chr5 137216415 137600298 383884 * c(KIF20A, BRD8, GFRA3, PKD2L2, FAM13B, WNT8A, NME5, CDC23, MYOT) NA 0 NA 0.610586640636483 807 0.285085812223439 2 NA NA -5.81949683606382 LTS-039 chr5 137600299 137609959 9661 * GFRA3 NA 0 NA 1.02 1 NA NA NA NA NA LTS-039 chr5 137609960 137610169 210 * GFRA3 0.367 1 NA 0.855915877274804 5 0.139229307259643 4 4 0 -5.76442099828423 LTS-039 chr5 137610170 138208523 598354 * c(CTNNA1, EGR1, ETF1, LRRTM2, GFRA3, SNORD63, HSPA9, FAM53C, REEP2, KDM3B, CDC25C) 0.313845982573493 9 0.135359808576171 0.990526678036186 771 0.508207031240206 4 3 1 -6.75701295662437 LTS-039 chr5 138208524 138651503 442980 * c(CTNNA1, LRRTM2, SNORA74A, SIL1, SNHG4, MATR3) NA 0 NA 0.50446049062327 261 0.234180307433848 2 NA NA -5.77692501501745 LTS-039 chr5 138651504 138651710 207 * MATR3 NA 0 NA 1.044 1 NA NA NA NA NA LTS-039 chr5 138651711 138942037 290327 * c(SPATA24, DNAJC18, TMEM173, PROB1, MZB1, PAIP2, ECSCR, UBE2D2, MATR3, SLC23A1) 0.349944996531427 8 0.139218161274208 1.05870333011487 590 0.471815798414129 6 4 2 -6.75584636890205 LTS-039 chr5 138942038 138979889 37852 * UBE2D2 NA 0 NA 0.457 1 NA NA NA NA NA LTS-039 chr5 138979890 139060708 80819 * c(CXXC5, UBE2D2) NA 0 NA 0.472929109101424 76 0.141510251937832 2 NA NA -5.79649245198187 LTS-039 chr5 139060709 139494620 433912 * c(LINC01024, CXXC5, PURA, PSD2, NRG2) NA 0 NA 0.86507090934996 272 0.468989207165825 4 NA NA -5.76549954233758 LTS-039 chr5 139494621 139505985 11365 * c(IGIP, PURA) NA 0 NA 2.00173294243629 40 1.00978236262662 10 NA NA -5.76441138730129 LTS-039 chr5 139505986 139919176 413191 * c(HBEGF, ANKHD1-EIF4EBP3, IGIP, PFDN1, ANKHD1, SLC4A9, CYSTM1) 0.366847649837096 8 0.0701427116670007 0.754847003006015 526 0.295783341250098 3 2 1 -6.74527875391378 LTS-039 chr5 139919177 140165957 246781 * c(SRA1, APBB3, SLC35A4, ZMAT2, HARS2, HARS, IK, DND1, ANKHD1-EIF4EBP3, NDUFA2, WDR55, ANKHD1, TMCO6, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, EIF4EBP3, CD14) 0.343058022669116 24 0.114311668733755 0.94000622857913 846 0.374860004570459 6 4 2 -6.82508248658645 LTS-039 chr5 140165958 140683635 517678 * c(PCDHB5, PCDHB1, PCDHB18P, PCDHB17P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, PCDHB16, SLC25A2, PCDHB19P, PCDHA9) 0.344555478967293 29 0.0941048309696301 0.395593942289307 1685 0.240998789656299 1 1 0 -7.44500643189934 LTS-039 chr5 140683636 140710611 26976 * c(PCDHGA1, TAF7) NA 0 NA 0.75007094711111 56 0.171620775503479 3 NA NA -5.76596146797095 LTS-039 chr5 140710612 140874552 163941 * c(PCDHGA12, PCDHGC3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHGB4, PCDHGA8) 0.398 1 NA 0.455007620267961 1084 0.174214313698903 2 2 0 -5.84034647749609 LTS-039 chr5 140874553 140884960 10408 * c(PCDHGA12, PCDHGC3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB4, PCDHGA8) NA 0 NA 0.639 1 NA NA NA NA NA LTS-039 chr5 140884961 145892719 5007759 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, TCERG1, PRELID2, SH3RF2, PLAC8L1, DIAPH1, FGF1, ARHGAP26, PCDHGA12, RELL2, NR3C1, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, KCTD16, HMHB1, GRXCR2, ARAP3, LOC729080, NDFIP1, YIPF5, SPRY4, PCDHGB4, NA NA NA NA NA NA NA NA NA LTS-039 HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.372873583973784 47 0.07708414734842 0.816667068130281 2942 1.43825916408934 3 2 1 -6.76095179842921 LTS-039 NA NA NA NA LTS-039 chr5 145892720 146730772 838053 * c(PPP2R2B-IT1, GPR151, STK32A, PPP2R2B) 0.413499385788302 3 0.0235442845152138 0.543153944160827 244 0.198033092983171 2 1 1 -7.04391455572033 LTS-039 chr5 146730773 146741027 10255 * STK32A NA 0 NA 0.796 1 NA NA NA NA NA LTS-039 chr5 146741028 147513626 772599 * c(SPINK5, SCGB3A2, JAKMIP2-AS1, DPYSL3, STK32A, C5orf46, SPINK1, JAKMIP2) 0.366313775324359 23 0.095295235023488 0.759586669573073 737 0.375134283647998 3 2 1 -6.74876870810256 LTS-039 chr5 147513627 148207847 694221 * c(SPINK5, SPINK13, ADRB2, HTR4, SPINK6, SPINK14, SPINK9, SH3TC2, FBXO38, SPINK7) 0.39431853886195 11 0.045372598859584 0.523925584967224 441 0.235545162949506 2 1 1 -7.09710318644277 LTS-039 chr5 148207848 148442620 234773 * c(ADRB2, SH3TC2) 0.344276617144338 6 0.0692695219174109 1.07609439294167 196 0.504316191008003 6 4 2 -6.7598183737721 LTS-039 chr5 148442621 148680022 237402 * c(AFAP1L1, ABLIM3, SH3TC2) 0.453385677538532 6 0.0920927069135589 0.572048557342417 198 0.19447839257271 2 1 1 -6.79027076664002 LTS-039 chr5 148680023 148680619 597 * AFAP1L1 NA 0 NA 1.096 1 NA NA NA NA NA LTS-039 chr5 148680620 148810355 129736 * c(AFAP1L1, GRPEL2, IL17B, MIR143, CARMN, PCYOX1L) 0.417 1 NA 0.907340973886954 296 0.405873388962141 4 4 0 -5.76455264207677 LTS-039 chr5 148810356 148871762 61407 * CARMN NA 0 NA 1.923 1 NA NA NA NA NA LTS-039 chr5 148871763 148930847 59085 * CSNK1A1 0.321 1 NA 1.66648402969174 168 0.901405954390572 8 8 0 -5.76445552775246 LTS-039 chr5 148930848 148977249 46402 * c(CSNK1A1, ARHGEF37) NA 0 NA 0.681 1 NA NA NA NA NA LTS-039 chr5 148977250 149416520 439271 * c(PPARGC1B, SLC26A2, HMGXB3, ARHGEF37, PDE6A, TIGD6) 0.323453762068289 18 0.138489328533454 0.903475587004859 937 0.484978274779773 4 3 1 -6.75412327574976 LTS-039 chr5 149416521 149416865 345 * HMGXB3 NA 0 NA 0.773 1 NA NA NA NA NA LTS-039 chr5 149416866 150072585 655720 * c(CDX1, SYNPO, CSF1R, HMGXB3, NDST1, ARSI, PDGFRB, RBM22, RPS14, SLC6A7, TCOF1, CAMK2A, MYOZ3, CD74) 0.35552222451756 38 0.087401250922818 0.717403116051877 1620 0.804216145164038 3 2 1 -6.752153410724 LTS-039 chr5 150072586 150158243 85658 * c(DCTN4, RBM22, SMIM3) 0 1 NA 1.02932012211983 191 0.375751803090137 5 5 0 -5.76501607143179 LTS-039 chr5 150158244 151055862 897619 * c(TNIP1, ZNF300P1, SLC36A2, SLC36A1, FAT2, CCDC69, GM2A, SLC36A3, GPX3, ANXA6, IRGM, SPARC, SMIM3, ZNF300) 0.374070811540975 63 0.0583234663588388 0.675683153034402 1497 0.309167741431578 3 2 1 -6.74934605811022 LTS-039 chr5 151055863 151121849 65987 * SPARC NA 0 NA 0.946 1 NA NA NA NA NA LTS-039 chr5 151121850 151192316 70467 * c(LOC100652758, G3BP1, ATOX1) 0.294600396790938 12 0.189342082597674 0.94902666532196 377 0.423913296391355 4 3 1 -6.73408897302018 LTS-039 chr5 151192317 151202078 9762 * GLRA1 NA 0 NA 0.603 1 NA NA NA NA NA LTS-039 chr5 151202079 153193249 1991171 * c(GLRA1, GRIA1, NMUR2) 0.299827939369049 5 0.0164711869639076 0.556146856764849 272 0.190521652846848 4 3 1 -10.4555151293669 LTS-039 chr5 153193250 153369653 176404 * GRIA1 NA 0 NA 1.575 1 NA NA NA NA NA LTS-039 chr5 153369654 154393385 1023732 * c(MIR3141, FAXDC2, FAM114A2, LARP1, GEMIN5, KIF4B, MRPL22, SAP30L-AS1, MFAP3, GALNT10, SAP30L, CNOT8, HAND1) 0.355399394853757 33 0.0631635383410206 0.844516104707619 1204 0.412082337010065 3 2 1 -6.87485518190553 LTS-039 chr5 154393386 154393492 107 * KIF4B NA 0 NA 0.546 1 NA NA NA NA NA LTS-039 chr5 154393493 157107239 2713747 * c(C5orf52, SOX30, PPP1R2P3, FAM71B, HAVCR1, CYFIP2, KIF4B, NIPAL4, ITK, FNDC9, SGCD, HAVCR2, ADAM19, TIMD4, MED7) 0.350906011762199 32 0.0579183849439548 0.611207313631727 1481 0.269643795847841 3 2 1 -7.28028492464578 LTS-039 chr5 157107240 157158199 50960 * character(0) NA 0 NA 1.782 1 NA NA NA NA NA LTS-039 chr5 157158200 159521090 2362891 * c(PWWP2A, LSM11, UBLCP1, ADRA1B, RNF145, EBF1, LOC285626, LOC285627, IL12B, THG1L, TTC1, CLINT1) 0.372036823003787 15 0.109857613473511 0.968801420199751 884 0.585238057009448 5 3 2 -6.83568815728639 LTS-039 chr5 159521091 159535478 14388 * PWWP2A NA 0 NA 0.55 1 NA NA NA NA NA LTS-039 chr5 159535479 159822571 287093 * c(PWWP2A, C1QTNF2, FABP6, ZBED8, CCNJL) 0.382103218391372 2 0.051618795026618 0.71823938167382 265 0.238658744590166 3 2 1 -6.76030007289371 LTS-039 chr5 159822572 159828635 6064 * ZBED8 NA 0 NA 1.815 1 NA NA NA NA NA LTS-039 chr5 159828636 159901620 72985 * c(MIR3142, SLU7, PTTG1) 0.342640567665432 2 0.0127279220613578 1.24709714783824 149 0.595516873281641 12 8 4 -6.79781654365963 LTS-039 chr5 159901621 159912336 10716 * character(0) NA 0 NA 0.713 1 NA NA NA NA NA LTS-039 chr5 159912337 161582304 1669968 * c(ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, LOC285629, MIR146A) 0.357322547170564 11 0.136915899866902 0.571661302074606 693 0.276301483318417 2 1 1 -6.97195321456718 LTS-039 chr5 161582305 167689910 6107606 * c(NUDCD2, GABRG2, MAT2B, HMMR, TENM2, CCNG1) 0.381400042616608 12 0.135174942764978 0.846005129268162 543 0.407699046738228 4 2 2 -6.87222490564247 LTS-039 chr5 167689911 167689961 51 * TENM2 NA 0 NA 1.29 1 NA NA NA NA NA LTS-039 chr5 167689962 169026126 1336165 * c(MIR103B1, WWC1, FBLL1, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, SLIT3, MIR585, PANK3) 0.44834436466914 19 0.0312513859341793 1.04650122138667 854 0.430629660951729 4 2 2 -7.02730492247259 LTS-039 chr5 169026127 169028249 2123 * SPDL1 NA 0 NA 0.785 1 NA NA NA NA NA LTS-039 chr5 169028250 172118532 3090283 * c(FAM196B, MIR3912, MIR378E, C5orf58, DOCK2, FOXI1, FBXW11, GABRP, LINC01366, EFCAB9, SH3PXD2B, TLX3, KCNIP1, KCNMB1, LCP2, NPM1, NEURL1B, SPDL1, RANBP17, STK10, FGF18, UBTD2) 0.360435167652318 58 0.0602286352638604 0.779972534982102 2025 0.374712305431904 3 2 1 -6.8621782273378 LTS-039 chr5 172118533 172261456 142924 * c(DUSP1, NEURL1B, ERGIC1) NA 0 NA 2.16268153884586 54 0.594041199069117 11 NA NA -5.76441321981262 LTS-039 chr5 172261457 172261462 6 * ERGIC1 0.342 1 NA 0.47 1 NA NA NA NA NA LTS-039 chr5 172261463 172591110 329648 * c(LOC100268168, CREBRF, RPL26L1, ERGIC1, BNIP1, SNORA74B, ATP6V0E1) 0.321659884942251 6 0.0652954822326935 0.93658464389899 520 0.450222269284073 4 3 1 -6.81601854222976 LTS-039 chr5 172591111 173416342 825232 * c(C5orf47, NKX2-5, LOC285593, BNIP1, CPEB4, STC2, BOD1) 0.274509155609728 3 0.0283783955383903 1.31100191274639 462 0.769290682106808 8 6 2 -6.7713635625085 LTS-039 chr5 173416343 175110223 1693881 * c(MIR4634, C5orf47, DRD1, HRH2, FLJ16171, MSX2, HMP19, SFXN1) 0.278184995656306 4 0.187021166360032 0.751527238693722 338 0.346789591042556 3 2 1 -6.9032131127959 LTS-039 chr5 175110224 175386678 276455 * c(CPLX2, HRH2, THOC3) 0.397668057346514 8 0.0547115814326102 0.477109231565721 178 0.189343214353419 2 1 1 -6.99619821082611 LTS-039 chr5 175386679 175392067 5389 * THOC3 NA 0 NA 0.221338438024056 72 0.216166254465493 0 NA NA -5.76925617292153 LTS-039 chr5 175392068 175740765 348698 * c(LOC100507387, FAM153B, SIMC1, LOC643201, THOC3) 0.279 1 NA 0.508799821828145 153 0.83812228353642 2 2 0 -5.76494309818838 LTS-039 chr5 175740766 176002231 261466 * c(CLTB, HIGD2A, RNF44, FAF2, ARL10, SIMC1, NOP16, CDHR2, KIAA1191) 0.357109513777847 12 0.12650796477501 0.807253369326066 687 0.342741517000835 3 2 1 -6.76172420584632 LTS-039 chr5 176002232 176002236 5 * CDHR2 NA 0 NA 0.543 1 NA NA NA NA NA LTS-039 chr5 176002237 176525029 522793 * c(MIR4281, GPRIN1, FGFR4, ZNF346, EIF4E1B, TSPAN17, HK3, UIMC1, CDHR2, SNCB, UNC5A) 0.37014865699762 30 0.110593534553596 0.608269725975744 900 0.327931264692576 3 2 1 -6.80359927702613 LTS-039 chr5 176525030 176525128 99 * FGFR4 NA 0 NA 0.85 1 NA NA NA NA NA LTS-039 chr5 176525129 177032051 506923 * c(RGS14, LMAN2, B4GALT7, DBN1, F12, PRELID1, GRK6, PRR7-AS1, PFN3, DDX41, RAB24, FAM193B, TMED9, NSD1, SLC34A1, DOK3, PRR7, MXD3, PDLIM7) 0.370469226067836 26 0.0556188816859886 0.895145533406294 1487 0.384442107372475 3 2 1 -6.84001293491384 LTS-039 chr5 177032052 177151082 119031 * c(B4GALT7, LOC202181, FAM153A) 0.31219490338199 2 0.067175144212722 0.575919357010764 75 0.253224822659254 4 3 1 -6.96703269059398 LTS-039 chr5 177151083 177151228 146 * FAM153A NA 0 NA 0.118 1 NA NA NA NA NA LTS-039 chr5 177151229 177305784 154556 * c(FAM153A, LOC728554) 0.373 1 NA 0.26552457334404 82 0.199524350458222 1 1 0 -5.93818506691315 LTS-039 chr5 177305785 177309347 3563 * LOC728554 NA 0 NA 0.795 1 NA NA NA NA NA LTS-039 chr5 177309348 177474268 164921 * c(PROP1, FAM153C, LOC728554) 0.337131274220406 2 0.0268700576850888 0.500062699017166 121 0.25578837537153 3 2 1 -7.74854005496218 LTS-039 chr5 177474269 177482580 8312 * FAM153C NA 0 NA 1.44 1 NA NA NA NA NA LTS-039 chr5 177482581 177659754 177174 * c(N4BP3, HNRNPAB, NHP2, GMCL1P1, RMND5B, PHYKPL) 0.385965533840085 6 0.0408578837761657 1.11978656793552 424 0.480908694056647 8 5 3 -6.79431023598298 LTS-039 chr5 177659755 177659778 24 * PHYKPL 0.314 1 NA 0.557 1 NA NA NA NA NA LTS-039 chr5 177659779 177734031 74253 * c(PHYKPL, COL23A1) 0.377985575276375 6 0.0619109575654154 0.592422698630878 141 0.342557500923134 3 2 1 -6.75303362160787 LTS-039 chr5 177734032 177987673 253642 * COL23A1 NA 0 NA 1.524 1 NA NA NA NA NA LTS-039 chr5 177987674 178153250 165577 * c(CLK4, ZNF354A, COL23A1) NA 0 NA 1.01135251841389 170 0.414404934081245 5 NA NA -5.76638326943486 LTS-039 chr5 178153251 178952062 798812 * c(ZNF354B, ZNF454, GRM6, ZNF354C, ZNF879, ZNF354A, AACSP1, ZFP2, ADAMTS2) 0.370155461189046 33 0.0581286777917594 0.619416901416793 784 0.369322783058201 3 2 1 -6.79961807146106 LTS-039 chr5 178952063 178977549 25487 * character(0) NA 0 NA 1.101 1 NA NA NA NA NA LTS-039 chr5 178977550 179051688 74139 * c(HNRNPH1, RUFY1) 0.306453715975869 5 0.039319206502675 1.23020499002414 238 0.657324778108346 7 5 2 -6.7433227665436 LTS-039 chr5 179051689 179069270 17582 * C5orf60 NA 0 NA 0.433 1 NA NA NA NA NA LTS-039 chr5 179069271 179105812 36542 * c(C5orf60, CBY3) 0.372731192682154 5 0.0527019923722054 0.535409529541093 63 0.233043667029266 3 2 1 -6.76596621188838 LTS-039 chr5 179105813 179289342 183530 * c(MIR1229, MGAT4B, TBC1D9B, LTC4S, C5orf45, CBY3, CANX, SQSTM1, MAML1) 0.311304810738875 13 0.180077227023041 0.980965049452906 603 0.500773701848802 4 3 1 -6.74051537207481 LTS-039 chr5 179289343 180035334 745992 * c(TBC1D9B, FLT4, RASGEF1C, MIR340, RNF130, MAPK9, CNOT6, SCGB3A1, GFPT2) 0.383684342667831 13 0.0624360185330263 0.733407127688129 844 0.29706788924234 3 2 1 -6.76195011434112 LTS-039 chr5 180035335 180035901 567 * FLT4 NA 0 NA 0.396 1 NA NA NA NA NA LTS-039 chr5 180035902 180220135 184234 * c(OR2Y1, FLT4, MGAT1) 0.353488159407067 5 0.108694526081123 0.54023214859384 238 0.211207300517277 3 2 1 -6.9306137329474 LTS-039 chr5 180220136 180274634 54499 * c(HEIH, MGAT1, ZFP62, LINC00847) NA 0 NA 2.051 1 NA NA NA NA NA LTS-039 chr5 180274635 180429799 155165 * c(BTNL3, ZFP62, BTNL8) 0.386763428497024 4 0.0480095476615502 1.02180988863303 190 0.414467777008998 5 3 2 -6.83973822968503 LTS-039 chr5 180429800 180582980 153181 * c(BTNL3, BTNL9, OR2V1, OR2V2) 0.405574578156968 13 0.0627051504857129 0.669975106633944 203 0.282878284661589 2 1 1 -6.88946131027582 LTS-039 chr5 180582981 180582986 6 * character(0) NA 0 NA 0.69 1 NA NA NA NA NA LTS-039 chr5 180582987 180620933 37947 * TRIM7 NA 0 NA 1.588 1 NA NA NA NA NA LTS-039 chr5 180620934 180688111 67178 * c(MIR4638, RACK1, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) NA 0 NA 1.19859339670597 349 0.549444772563199 6 NA NA -5.76466996636243 LTS-039 chr6 203389 311938 108550 * DUSP22 0.112 1 NA 0.636119687956754 25 0.288953992877759 3 3 0 -5.77411666921468 LTS-039 chr6 311939 397222 85284 * c(IRF4, DUSP22) 0.265150347618359 5 0.146504948721878 0.46456239137772 121 0.20130943623799 1 1 0 -6.84630641331341 LTS-039 chr6 397223 398734 1512 * IRF4 NA 0 NA 0.967 1 NA NA NA NA NA LTS-039 chr6 398735 1610908 1212174 * c(HUS1B, FOXF2, FOXC1, LINC01622, IRF4, EXOC2, FOXQ1) 0.0822249089680717 5 0.0439260742611948 0.800821985897354 449 0.564841919822107 4 4 0 -6.81198965851386 LTS-039 chr6 1610909 1624209 13301 * c(FOXC1, GMDS) 0.018 1 NA 3.44070437667167 67 1.32956375712506 18 18 0 -5.764410328019 LTS-039 chr6 1624210 2622353 998144 * c(GMDS-AS1, GMDS) 0.053 1 NA 1.68260989677143 63 1.13525088682496 8 8 0 -5.76522527818066 LTS-039 chr6 2622354 4068832 1446479 * c(LOC100507194, MIR4645, LINC01600, SERPINB1, PXDC1, SERPINB9P1, FAM217A, FAM50B, MYLK4, TUBB2B, PSMG4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, WRNIP1, SLC22A23, BPHL, TUBB2A, RIPK1, PRPF4B) 0.105480766179409 31 0.0458617370444163 0.923260708365348 1321 0.407492907230897 4 4 0 -6.76873986987438 LTS-039 chr6 4068833 4954557 885725 * c(ECI2, FAM217A, C6orf201, CDYL) 0.144576790206393 2 0.161220346110533 0.572289753970193 272 0.237898604732354 2 2 0 -6.79131942924861 LTS-039 chr6 4954558 6144456 1189899 * c(MIR3691, FARS2, RPP40, F13A1, NRN1, LYRM4, PPP1R3G, CDYL) 0.109127137276048 8 0.0256734298448805 0.957410953889544 286 0.562163373633839 4 4 0 -6.91351460674904 LTS-039 chr6 6144457 6589090 444634 * c(F13A1, LY86-AS1, LY86) 0.120308445875155 5 0.103309244504062 0.583306617261143 138 0.268500518639104 2 2 0 -6.85335955914557 LTS-039 chr6 6589091 7612104 1023014 * c(SNRNP48, DSP, LY86-AS1, CAGE1, RREB1, SSR1, RIOK1, LY86) 0.092459771033815 35 0.0352756968735696 0.957248049066546 1056 0.453461422548524 4 4 0 -6.75189907746207 LTS-039 chr6 7612105 7726968 114864 * SNRNP48 NA 0 NA 0.831 1 NA NA NA NA NA LTS-039 chr6 7726969 10393871 2666903 * c(SCARNA27, LOC100506207, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, PIP5K1P1, SLC35B3, BLOC1S5, BMP6, HULC, TXNDC5, EEF1E1) 0.111003046736645 10 0.0649516059163368 0.789954359888215 530 0.447010423109556 3 3 0 -6.83013105908585 LTS-039 chr6 10393872 10396974 3103 * TFAP2A NA 0 NA 2.056 1 NA NA NA NA NA LTS-039 chr6 10396975 10557196 160222 * c(TFAP2A-AS1, MIR5689, LINC00518, GCNT2, TFAP2A) 0.0637403149053356 3 0.006 1.45852346115328 196 0.80480376486922 6 6 0 -7.00717274472048 LTS-039 chr6 10557197 10557277 81 * GCNT2 NA 0 NA 0.76 1 NA NA NA NA NA LTS-039 chr6 10557278 13273451 2716174 * c(TMEM170B, ELOVL2-AS1, EDN1, PHACTR1, SMIM13, SYCP2L, GCNT2, HIVEP1, C6orf52, ERVFRD-1, MAK, NEDD9, TBC1D7, TMEM14C, ELOVL2, PAK1IP1, TMEM14B, ADTRP, GCM2) 0.112204867276941 44 0.054532163637948 0.786761946384809 1765 0.474323052212716 3 3 0 -6.81650605436007 LTS-039 chr6 13273452 13275284 1833 * c(PHACTR1, TBC1D7) 0.0914134295108992 2 0.00636396103067894 1.75566919086606 40 0.488143116886946 15 14 1 -6.74621355065355 LTS-039 chr6 13275285 16305871 3030587 * c(LOC100130357, RANBP9, MIR4639, RNF182, PHACTR1, SIRT5, GMPR, MYLIP, JARID2, TBC1D7, NOL7, GFOD1, ATXN1, MCUR1, DTNBP1, CD83) 0.116334750841835 27 0.0413931879830004 0.949478618713316 1319 0.472487779788331 4 4 0 -6.91596516634739 LTS-039 chr6 16305872 21232426 4926555 * c(CAP2, MBOAT1, E2F3, KDM1B, RBM24, RNF144B, ID4, NHLRC1, STMND1, FAM8A1, CDKAL1, ATXN1, KIF13A, MIR548A1, TPMT, DEK, NUP153) 0.0900724112816997 19 0.0646455020529079 0.78645350733296 1706 0.440885051620534 4 4 0 -6.96780764295241 LTS-039 chr6 21232427 21232506 80 * CDKAL1 NA 0 NA 1.546 1 NA NA NA NA NA LTS-039 chr6 21232507 21598858 366352 * c(CDKAL1, SOX4) 0.092 1 NA 1.95880378865143 102 1.04217399990987 10 10 0 -5.76442306274179 LTS-039 chr6 22136726 24358529 2221804 * c(NRSN1, HDGFL1, KAAG1, CASC15, DCDC2, PRL, NBAT1) 0.145234084177539 7 0.0321647544459992 0.564092441682305 288 0.308217815864934 2 2 0 -6.90947952522454 LTS-039 chr6 24358530 24403157 44628 * c(DCDC2, MRS2) NA 0 NA 0.688 1 NA NA NA NA NA LTS-039 chr6 24403158 24714543 311386 * c(GPLD1, TDP2, ACOT13, MRS2, ALDH5A1, C6orf62, KIAA0319) 0.0844929450621654 29 0.049000728857553 0.834537067536775 743 0.9040518160712 5 5 0 -6.75414722947172 LTS-039 chr6 24714544 24777182 62639 * c(GMNN, C6orf62) 0.046 2 0.00282842712474619 1.57594994591211 65 1.0732923079783 9 9 0 -6.87799374961694 LTS-039 chr6 24777183 24777229 47 * GMNN NA 0 NA 0.752 1 NA NA NA NA NA LTS-039 chr6 24777230 25652601 875372 * c(SCGN, GMNN, CARMIL1, CMAHP, FAM65B) 0.125562520553631 13 0.0504389704850302 0.69401395347704 556 0.357678334397 3 3 0 -6.74424782598337 LTS-039 chr6 25652602 25652614 13 * SCGN NA 0 NA 0.497 1 NA NA NA NA NA LTS-039 chr6 25652615 25966956 314342 * c(SLC17A4, SLC17A2, TRIM38, SCGN, SLC17A3, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A1) 0 2 0 0.492079606231406 374 0.315934485232547 0 0 0 -Inf LTS-039 chr6 25966957 26027144 60188 * c(TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B) NA 0 NA 0.900340155023806 108 0.347656426165554 4 NA NA -5.76443778934776 LTS-039 chr6 26027145 26056616 29472 * c(HIST1H1C, HIST1H2BB, HIST1H2AB, HIST1H3C, HIST1H3B, HIST1H4B) NA 0 NA 2.17323271305452 68 0.745927702676821 11 NA NA -5.76441239308189 LTS-039 chr6 26056617 26108401 51785 * c(HIST1H1C, HIST1H1T, HFE, HIST1H4C) 0.0853454566127131 3 0.0303699412797149 0.980023825850138 148 0.466271174325613 5 5 0 -6.75806833915703 LTS-039 chr6 26108402 26123619 15218 * character(0) NA 0 NA 2.857 1 NA NA NA NA NA LTS-039 chr6 26123620 26365619 242000 * c(BTN3A2, HIST1H1D, HIST1H1E, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2AC, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3D, HIST1H3E, HIST1H3G, HIST1H4D, HIST1H4F, HIST1H4H, HIST1H4E, HIST1H4G, HIST1H3F) NA 0 NA 1.80893286744588 293 0.831523180767851 9 NA NA -5.7644244573199 LTS-039 chr6 26365620 26368317 2698 * BTN3A2 NA 0 NA 0.681 1 NA NA NA NA NA LTS-039 chr6 26368318 26600330 232013 * c(BTN3A3, BTN2A2, HMGN4, BTN3A2, BTN3A1, BTN2A1, LOC285819, ABT1, HCG11, BTN2A3P, BTN1A1) NA 0 NA 0.822564129944312 631 0.387976595121258 4 NA NA -5.77043067827147 LTS-039 chr6 26600331 26636495 36165 * ZNF322 NA 0 NA 0.003 1 NA NA NA NA NA LTS-039 chr6 26636496 26638994 2499 * ZNF322 NA 0 NA 0.228535312630624 54 0.142807749996698 0 NA NA -5.77087564834292 LTS-039 chr6 26638995 27115405 476411 * c(LINC00240, LOC100270746, MIR3143, GUSBP2, ZNF322, HIST1H4I, HIST1H2AH, HIST1H2BK, HIST1H2AG, HIST1H2BJ) NA 0 NA 1.77053268883272 97 0.538575557186704 9 NA NA -5.76458178622539 LTS-039 chr6 27115406 27215412 100007 * MIR3143 NA 0 NA 0.4 1 NA NA NA NA NA LTS-039 chr6 27215413 27435784 220372 * c(PRSS16, ZNF391, VN1R10P, ZNF184, ZNF204P, POM121L2) NA 0 NA 0.554039817184136 353 0.183785810524484 2 NA NA -5.77159865550911 LTS-039 chr6 27435785 27439922 4138 * ZNF184 NA 0 NA 1.249 1 NA NA NA NA NA LTS-039 chr6 27439923 27861721 421799 * c(LOC100131289, LINC01012, HIST1H1B, ZNF184, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L) 0.064345192362319 2 0.0106066017177982 1.48749222859799 233 0.574536748355484 6 6 0 -6.82087139007336 LTS-039 chr6 27861722 27878947 17226 * character(0) NA 0 NA 0.457 1 NA NA NA NA NA LTS-039 chr6 27878948 28402062 523115 * c(ZSCAN16-AS1, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, OR2B6, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, OR2B2, PGBD1, ZSCAN12) 0.114 1 NA 0.675783866197846 849 0.291294583778026 3 3 0 -5.77407396649289 LTS-039 chr6 28402063 28751650 349588 * c(ZSCAN23, GPX6) 0.143105746011337 3 0.0224796204001165 0.446938312562048 246 0.167995482025813 2 2 0 -7.26847155787258 LTS-039 chr6 28751651 28751656 6 * character(0) NA 0 NA 1.058 1 NA NA NA NA NA LTS-039 chr6 28751657 28912346 160690 * character(0) 0.0620466687409251 2 0.00989949493661166 1.33269600870314 103 0.538962899505703 7 7 0 -6.77975674403141 LTS-039 chr6 28912347 28962469 50123 * character(0) NA 0 NA 0.61 1 NA NA NA NA NA LTS-039 chr6 28962470 29431200 468731 * character(0) 0.157711383579009 28 0.048128946618906 0.484145970495427 495 0.338132380682822 2 2 0 -6.75519881980331 LTS-039 chr6 29431201 29798154 366954 * character(0) 0.10160745853939 12 0.0374047274600903 0.709897160142778 527 0.465106281862744 4 4 0 -6.80248510931531 LTS-039 chr6 29798155 29855582 57428 * character(0) NA 0 NA 10.007 1 NA NA NA NA NA LTS-039 chr6 29855583 29856633 1051 * character(0) 0.114477012091707 4 0.0496756144065342 1.67913224296882 20 14.3104750381817 12 11 1 -6.73317635507181 LTS-039 chr6 29856634 29857359 726 * character(0) 0.06 1 NA 0.744220134295031 3 0.14792340360245 3 3 0 -5.76445094632667 LTS-039 chr6 29857360 30640827 783468 * character(0) 0.076606036877761 93 0.0285623789348171 1.00117404583831 1682 0.49460328624808 5 5 0 -6.74727046020243 LTS-039 chr6 30640828 30644186 3359 * character(0) NA 0 NA 1.648 1 NA NA NA NA NA LTS-039 chr6 30644187 30681077 36891 * character(0) 0.0482691344008352 3 0.0245560583156173 1.30053037616583 294 0.475511178211531 9 9 0 -6.74388754857207 LTS-039 chr6 30681078 30681400 323 * character(0) NA 0 NA 3.096 1 NA NA NA NA NA LTS-039 chr6 30681401 30853655 172255 * character(0) 0.0764574994367869 3 0.0242693221990232 2.01094746015521 206 0.806310656820259 18 17 1 -6.77902991887459 LTS-039 chr6 30853656 30856096 2441 * character(0) NA 0 NA 1.167 1 NA NA NA NA NA LTS-039 chr6 30856097 30993377 137281 * character(0) 0.0505458515440718 37 0.0238372232697773 1.22806804723668 581 0.616987745405765 8 8 0 -6.75400466966185 LTS-039 chr6 30993378 30993383 6 * character(0) NA 0 NA 0.611 1 NA NA NA NA NA LTS-039 chr6 30993384 30997903 4520 * character(0) 0.127832448628254 4 0.0468926078040736 0.458140771523535 83 0.240973558613039 3 3 0 -6.76108074357267 LTS-039 chr6 30997904 31000000 2097 * character(0) NA 0 NA 0.623 1 NA NA NA NA NA LTS-039 chr6 31000001 31106177 106177 * character(0) 0.0657307001501443 8 0.0183828336071611 0.999220539005738 146 0.441968507044004 6 6 0 -6.75771089469057 LTS-039 chr6 31106178 31106268 91 * character(0) 0.126 1 NA 0.692168758265758 3 0.410341727506883 3 3 0 -5.76441037188374 LTS-039 chr6 31106269 31378319 272051 * character(0) 0.107501952198091 58 0.063749350850164 0.818364575490104 442 0.528879780038736 4 4 0 -6.75921550563415 LTS-039 chr6 31378320 31378358 39 * character(0) 0.192 1 NA 0.353 1 NA NA NA NA NA LTS-039 chr6 31378359 31382980 4622 * character(0) 0.157775100059152 21 0.0291416082832319 0.329918373992882 54 0.189082388248542 2 2 0 -6.75421482093833 LTS-039 chr6 31382981 31431060 48080 * character(0) NA 0 NA 1.685 1 NA NA NA NA NA LTS-039 chr6 31431061 31613050 181990 * character(0) 0.0897227491406657 31 0.0489419449807077 0.920091149084908 824 0.499623223414719 4 4 0 -6.74125042698395 LTS-039 chr6 31613051 31613233 183 * character(0) NA 0 NA 1.127 1 NA NA NA NA NA LTS-039 chr6 31613234 31948626 335393 * character(0) 0.0761149021801886 31 0.0232251254380445 1.16681638451808 2150 0.53258968903832 5 5 0 -6.74918124195696 LTS-039 chr6 31948627 31962056 13430 * character(0) NA 0 NA 0.102 1 NA NA NA NA NA LTS-039 chr6 31962057 32008693 46637 * character(0) 0.220935136640721 6 0.211499802994392 0.921850181713738 221 0.55609854616617 6 5 1 -6.74261359718669 LTS-039 chr6 32008694 32008718 25 * character(0) NA 0 NA 0.161 1 NA NA NA NA NA LTS-039 chr6 32008719 32013659 4941 * character(0) 0.060325971762844 2 0.089095454429505 0.431785509878722 60 0.337840610297373 6 6 0 -6.76663658389135 LTS-039 chr6 32013660 32013758 99 * character(0) NA 0 NA 0.512 1 NA NA NA NA NA LTS-039 chr6 32013759 32089115 75357 * character(0) 0.0933815517251898 6 0.0348864825780225 0.770355631787282 337 0.339555223707443 4 4 0 -6.74323204569963 LTS-039 chr6 32089116 32093825 4710 * character(0) NA 0 NA 1.965 1 NA NA NA NA NA LTS-039 chr6 32093826 32122508 28683 * character(0) 0.0646666666666667 2 0.0212132034355964 1.37095192733167 120 0.398070729396474 6 6 0 -6.747506627534 LTS-039 chr6 32122509 32139352 16844 * character(0) 0.098 1 NA 0.776194962004842 144 0.232855364184231 3 3 0 -5.765832724363 LTS-039 chr6 32139353 32146080 6728 * character(0) NA 0 NA 1.847 1 NA NA NA NA NA LTS-039 chr6 32146081 32168771 22691 * character(0) 0.111106581639594 4 0.0338821486921948 1.29198987238191 294 0.660162739356429 12 11 1 -6.74747523173131 LTS-039 chr6 32168772 32168805 34 * character(0) NA 0 NA 0.886 1 NA NA NA NA NA LTS-039 chr6 32168806 32338374 169569 * character(0) 0.0989012004250009 13 0.0385283778199381 0.641568903548155 394 0.269760735168249 4 4 0 -6.88610101130894 LTS-039 chr6 32338375 32339404 1030 * character(0) NA 0 NA 0.318 1 NA NA NA NA NA LTS-039 chr6 32339405 32427841 88437 * character(0) 0.151846313581051 13 0.0407971844176808 0.431090885862314 127 0.185633300917962 2 2 0 -6.82319280427131 LTS-039 chr6 32427842 32427871 30 * character(0) 0.29 1 NA 0.102 1 NA NA NA NA NA LTS-039 chr6 32427872 32552081 124210 * HLA-DRB5 0.270291582040884 66 0.133945596582429 0.471098344643647 186 0.394437213953292 1 1 0 -6.80052966659026 LTS-039 chr6 32552082 32552085 4 * HLA-DRB5 0.366 1 NA 0.107 1 NA NA NA NA NA LTS-039 chr6 32552086 32557550 5465 * HLA-DRB5 0.352195321118185 10 0.105962467149668 0.290736153855835 18 0.185125783065341 3 2 1 -6.82773065007066 LTS-039 chr6 32557551 32557606 56 * HLA-DRB5 0.194 1 NA 0.239365077375371 6 0.116762436882187 0 0 0 -5.76469500195077 LTS-039 chr6 32557607 32629891 72285 * c(HLA-DQA1, HLA-DRB5) 0.143523516390664 79 0.0761279181090079 0.248183206315334 208 0.192600856452324 2 2 0 -7.37057683730148 LTS-039 chr6 32629892 32629899 8 * character(0) NA 0 NA 0.494 1 NA NA NA NA NA LTS-039 chr6 32629900 32780957 151058 * character(0) 0.17983351443365 55 0.0955815867761136 0.526807953280514 177 0.507590972918542 2 2 0 -6.75860718952835 LTS-039 chr6 32780958 32781554 597 * character(0) NA 0 NA 0.540874431754614 12 0.243269444705398 2 NA NA -5.76441227694422 LTS-039 chr6 32781555 32793981 12427 * character(0) 0.064 1 NA 0.847151931632401 51 0.375671337375491 4 4 0 -5.76454900651319 LTS-039 chr6 32793982 32949260 155279 * character(0) 0.105247406578062 12 0.0297029485323453 1.22006016776649 545 0.516988461509068 4 4 0 -6.83359722675185 LTS-039 chr6 32949261 32971957 22697 * character(0) NA 0 NA 0.563 1 NA NA NA NA NA LTS-039 chr6 32971958 33163471 191514 * character(0) 0.115172634950322 18 0.0418023672594834 0.76114756757896 623 4.96359099104037 3 3 0 -6.73937896236777 LTS-039 chr6 33163472 33163694 223 * character(0) NA 0 NA 1.341 1 NA NA NA NA NA LTS-039 chr6 33163695 33283059 119365 * character(0) 0.08576872617128 18 0.0282806314930742 1.25210232166041 748 0.53530347491426 5 5 0 -6.77051608744271 LTS-039 chr6 33283060 33393689 110630 * character(0) 0.0560908914667415 6 0.0249773230484507 1.80795535796202 345 0.794784688248384 8 8 0 -6.74543538897822 LTS-039 chr6 33393690 33399488 5799 * character(0) NA 0 NA 1.235 1 NA NA NA NA NA LTS-039 chr6 33399489 33665522 266034 * c(ITPR3, LINC00336, GGNBP1, BAK1, UQCC2) 0.0775842888216307 7 0.0207582456364877 1.19886123453115 619 0.469413257822919 5 5 0 -6.74602287341104 LTS-039 chr6 33665523 33767043 101521 * c(IP6K3, LEMD2, MLN, UQCC2) 0.0431272406468995 7 0.0104380257210059 1.81830536168611 192 0.822728997599089 10 10 0 -6.73365428779385 LTS-039 chr6 33767044 33768743 1700 * MLN NA 0 NA 0.752 1 NA NA NA NA NA LTS-039 chr6 33768744 34496433 727690 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, C6orf1, GRM4, PACSIN1, HMGA1, MLN, RPS10) 0.0640843474611196 7 0.0459798092334326 1.02731587933789 290 0.651134992155839 6 6 0 -6.77730962016307 LTS-039 chr6 34496434 34512331 15898 * c(SPDEF, PACSIN1) NA 0 NA 1.57296203796454 125 0.605358762515947 8 NA NA -5.76442705910874 LTS-039 chr6 34512332 34555048 42717 * SPDEF NA 0 NA 0.651 1 NA NA NA NA NA LTS-039 chr6 34555049 35748931 1193883 * c(MIR5690, FANCE, ARMC12, SCUBE3, FKBP5, ANKS1A, LOC285847, CLPSL1, CLPSL2, RPL10A, DEF6, PPARD, UHRF1BP1, C6orf106, SNRPC, TAF11, TCP11, TEAD3, TULP1, ZNF76) 0.0919291148112231 41 0.0454200450000314 0.824070711261355 1695 0.472696993039186 4 4 0 -6.75622871566516 LTS-039 chr6 35748932 35755658 6727 * CLPSL1 0.459 1 NA 1.14319626140655 9 0.267208771895269 5 5 0 -5.76464255907657 LTS-039 chr6 35755659 36446971 691313 * c(SLC26A8, CLPS, MAPK14, KCTD20, PXT1, LHFPL5, BRPF3, PNPLA1, CLPSL1, C6orf222, ETV7, MAPK13, SRPK1) 0.0760614745651465 18 0.0576865827560045 0.783295925973259 987 0.459193998487934 4 4 0 -6.83193698627211 LTS-039 chr6 36446972 37180134 733163 * c(MIR3925, CDKN1A, STK38, TMEM217, FGD2, PI16, C6orf89, KCTD20, MTCH1, RAB44, PPIL1, PIM1, CPNE5, SRSF3) 0.101549124639659 27 0.030138048946506 0.986620029882422 1040 0.510674587278932 4 4 0 -6.77588927304518 LTS-039 chr6 37180135 37180279 145 * TMEM217 NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr6 37180280 40400877 3220598 * c(LOC100131047, MIR4462, BTBD9, CCDC167, DNAH8, KIF6, TMEM217, CMTR1, DAAM2, MDGA1, GLO1, GLP1R, LINC00951, MOCS1, TBC1D22B, SAYSD1, LRFN2, ZFAND3, TDRG1, KCNK16, KCNK5, KCNK17, RNF8) 0.103279991030036 77 0.0464184693778761 0.73690149226318 2571 0.37139195571276 3 3 0 -6.8226578437265 LTS-039 chr6 40400878 40998141 597264 * c(UNC5CL, LRFN2) 0.276 1 NA 1.046085725645 13 0.308259360495887 5 5 0 -5.76669982538236 LTS-039 chr6 40998142 41029703 31562 * c(APOBEC2, TSPO2, UNC5CL) 0.273642344135865 4 0.0446318272088428 0.864775210195658 107 0.302338315862516 8 6 2 -6.81473920443828 LTS-039 chr6 41029704 41032523 2820 * c(APOBEC2, UNC5CL) NA 0 NA 1.257 1 NA NA NA NA NA LTS-039 chr6 41032524 41117068 84545 * c(APOBEC2, ADCY10P1, OARD1, UNC5CL, TREML1, NFYA) 0.295942821079116 6 0.0426118136983943 1.43039850770024 222 0.750210923570079 4 3 1 -6.75395403986369 LTS-039 chr6 41117069 41162620 45552 * c(TREML1, TREM2, TREML2) 0.284487718382933 6 0.101741666325388 0.636724216890616 145 0.206942143523941 4 3 1 -6.81445897052186 LTS-039 chr6 41162621 41165945 3325 * TREML2 NA 0 NA 1.105 1 NA NA NA NA NA LTS-039 chr6 41165946 42123366 957421 * c(TOMM6, MIR4641, FRS3, FOXP4, TAF8, TREML5P, USP49, TREML4, GUCA1A, PRICKLE4, TREML3P, MDFI, PGC, TREM1, C6orf132, BYSL, TFEB, TREML2, CCND3, NCR2, MED20) 0.284677413672142 32 0.080549223580087 1.14502626634802 1259 0.502863035247188 5 4 1 -6.8674959028928 LTS-039 chr6 42123367 42130593 7227 * GUCA1A NA 0 NA 0.6 1 NA NA NA NA NA LTS-039 chr6 42130594 42176116 45523 * c(GUCA1A, GUCA1B, MRPS10) NA 0 NA 0.688220543561652 128 0.445651747797493 3 NA NA -5.76455915558738 LTS-039 chr6 42176117 43163968 987852 * c(CNPY3, KLHDC3, PTCRA, CUL9, UBR2, GLTSCR1L, GNMT, RPL7L1, MEA1, C6orf226, ATP6V0CP3, MRPL2, PEX6, MRPS10, PPP2R5D, TRERF1, PTK7, PRPH2, SRF, TBCC, RRP36, KLC4, CUL7) 0.297587865168113 29 0.0580313317784479 1.13326898654263 1994 0.506556126800122 4 3 1 -6.86290450405479 LTS-039 chr6 43163969 43164311 343 * CUL9 NA 0 NA 0.644 1 NA NA NA NA NA LTS-039 chr6 43164312 43475126 310815 * c(DNPH1, SLC22A7, LRRC73, CUL9, ZNF318, CRIP3, DLK2, TTBK1, ABCC10, TJAP1) 0.301021645806575 21 0.0586599563261896 0.87422785838119 1038 0.357225099997671 4 3 1 -6.73569119359189 LTS-039 chr6 43475127 43475248 122 * LRRC73 NA 0 NA 1.372 1 NA NA NA NA NA LTS-039 chr6 43475249 43655580 180332 * c(RSPH9, LRRC73, YIPF3, POLH, GTPBP2, MRPS18A, XPO5, POLR1C, MAD2L1BP) 0 1 NA 1.34933908105409 680 0.646486907816924 7 7 0 -5.76534942464422 LTS-039 chr6 43655581 43738105 82525 * VEGFA NA 0 NA 4.968 1 NA NA NA NA NA LTS-039 chr6 43738106 43972893 234788 * c(LINC01512, C6orf223, VEGFA) 0.0916159053575747 2 0.127279220613579 2.87354550872836 165 1.31903903401099 15 14 1 -6.73304801250795 LTS-039 chr6 43972894 44081184 108291 * C6orf223 NA 0 NA 1.066 1 NA NA NA NA NA LTS-039 chr6 44081185 44148739 67555 * c(CAPN11, TMEM63B, MRPL14) 0.252 1 NA 0.910832164815616 234 0.352995708725941 4 4 0 -5.76455642012581 LTS-039 chr6 44148740 44148944 205 * CAPN11 NA 0 NA 1.167 1 NA NA NA NA NA LTS-039 chr6 44148945 44233487 84543 * c(MIR4647, CAPN11, SLC29A1, HSP90AB1, SLC35B2, NFKBIE) 0.285054944801802 5 0.0424464368351455 1.47930493180436 312 0.587540376833875 8 6 2 -6.75938711430159 LTS-039 chr6 44233488 44240240 6753 * c(TMEM151B, NFKBIE) NA 0 NA 0.754 1 NA NA NA NA NA LTS-039 chr6 44240241 46626303 2386063 * c(MIR4642, RCAN2, TCTE1, SPATS1, ENPP4, TMEM151B, CYP39A1, CLIC5, AARS2, ENPP5, MIR586, SUPT3H, RUNX2, SLC25A27, CDC5L) 0.342014106174893 41 0.101885708325435 1.15989229414926 1200 0.65090749430142 6 4 2 -6.76252081651571 LTS-039 chr6 46626304 46834850 208547 * c(ANKRD66, ADGRF5, TDRD6, MEP1A, PLA2G7, SLC25A27) 0.234211876517894 4 0.149618403502599 0.753702392734429 475 0.334189108007982 4 3 1 -6.87022182941031 LTS-039 chr6 46834851 46836604 1754 * ADGRF5 NA 0 NA 1.372 1 NA NA NA NA NA LTS-039 chr6 46836605 47641123 804519 * c(ADGRF5, ADGRF2, CD2AP, ADGRF1, TNFRSF21) 0.255 1 NA 1.03928254181997 494 0.444862836279023 5 5 0 -5.7667789390446 LTS-039 chr6 47641124 47641129 6 * ADGRF2 NA 0 NA 0.717 1 NA NA NA NA NA LTS-039 chr6 47641130 48036383 395254 * c(OPN5, ADGRF4, ADGRF2, PTCHD4) 0.30571548714554 7 0.0591338272379653 0.658434890908459 345 0.216408793237153 4 3 1 -7.17739620814656 LTS-039 chr6 48036384 49582616 1546233 * c(C6orf141, GLYATL3, PTCHD4, MUT, CENPQ, RHAG) 0.347 1 NA 0.946798997160879 272 0.54504037438843 4 4 0 -5.7756075478087 LTS-039 chr6 49582617 49583308 692 * RHAG NA 0 NA 0.515 1 NA NA NA NA NA LTS-039 chr6 49583309 51637613 2054305 * c(CRISP3, CRISP1, DEFB110, DEFB112, DEFB113, DEFB114, PGK2, PKHD1, RHAG, TFAP2B, CRISP2, TFAP2D) 0.272112495938456 13 0.122233960197815 0.656539500105865 644 0.277644174639819 3 2 1 -7.2037305182701 LTS-039 chr6 51637614 51640548 2935 * PKHD1 NA 0 NA 1.945 1 NA NA NA NA NA LTS-039 chr6 51640549 52522245 881697 * c(IL17F, EFHC1, IL17A, TRAM2-AS1, MIR206, MCM3, MIR133B, PKHD1, PAQR8, TRAM2) 0.256134377624586 21 0.0839626617695543 1.01606781503399 843 0.437294359515083 5 4 1 -6.74724211493721 LTS-039 chr6 52522246 52849454 327209 * c(GSTA5, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, LOC730101, GSTA7P) NA 0 NA 0.646205740810192 181 0.236605074080032 3 NA NA -5.79649707011294 LTS-039 chr6 52849455 52850251 797 * GSTA4 NA 0 NA 0.913 1 NA NA NA NA NA LTS-039 chr6 52850252 53788931 938680 * c(MIR5685, ICK, FBXO9, GCLC, GSTA4, KLHL31, LRRC1, ELOVL5, RPS16P5, GCM1) 0.303867629440594 6 0.0476924172868881 1.02888135878843 777 0.387371099360451 4 3 1 -6.81936944961942 LTS-039 chr6 53788932 53794702 5771 * character(0) NA 0 NA 0.76 1 NA NA NA NA NA LTS-039 chr6 53794703 55377739 1583037 * c(MLIP-IT1, FAM83B, TINAG, HCRTR2, GFRAL, HMGCLL1, MLIP) 0.330331862361903 23 0.0598990587004636 0.618352746574766 571 0.330345765912131 3 2 1 -7.16508969288627 LTS-039 chr6 55377740 55377783 44 * HMGCLL1 0.062 1 NA 1.945 1 NA NA NA NA NA LTS-039 chr6 55377784 56894879 1517096 * c(BEND6, HMGCLL1, BMP5, DST, COL21A1) 0.307011325703481 32 0.0796781580545619 0.793350264595746 1297 0.348945788020149 4 3 1 -6.84189536472488 LTS-039 chr6 56894880 56911329 16450 * character(0) NA 0 NA 1.019 1 NA NA NA NA NA LTS-039 chr6 56911330 57512678 601349 * c(ZNF451, RAB23, PRIM2, KIAA1586, BAG2) 0.337038354809462 48 0.0819513672597638 1.02644025900349 631 0.477944183364432 6 4 2 -6.82335181297757 LTS-039 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.883547458926296 19 0.40816348776996 4 NA NA -5.76469494045799 LTS-039 chr6 62390154 63921853 1531700 * KHDRBS2 0.432 1 NA 0.612790917002845 91 0.28345420175627 2 2 0 -5.99166436940073 LTS-039 chr6 63921854 64029985 108132 * LGSN 0.370041076347931 3 0.0140118997046558 0.569870841812454 80 0.251160041518742 3 2 1 -6.78676005602215 LTS-039 chr6 64029986 64286349 256364 * PTP4A1 NA 0 NA 1.985 1 NA NA NA NA NA LTS-039 chr6 64286350 64292301 5952 * PTP4A1 NA 0 NA 1.34653422460209 74 0.417902998484301 7 NA NA -5.76448953949315 LTS-039 chr6 64292302 70890417 6598116 * c(COL19A1, PHF3, EYS, LOC441155, SLC25A51P1, LMBRD1, ADGRB3, PTP4A1) 0.270215459370943 25 0.111866259435095 0.736596496848221 1170 0.382980821500419 3 2 1 -7.21833686685122 LTS-039 chr6 70890418 70894655 4238 * COL19A1 NA 0 NA 1.402 1 NA NA NA NA NA LTS-039 chr6 70894656 71012663 118008 * c(COL9A1, COL19A1) 0.126704896903486 13 0.0931970616902288 1.49542202296388 341 1.04240796993335 10 9 1 -6.74222417841304 LTS-039 chr6 71012664 73100507 2087844 * c(COL9A1, B3GAT2, SDHAF4, RIMS1, MIR30A, MIR30C2, FAM135A, SMAP1, OGFRL1, LINC00472) 0.298839442266445 13 0.0509417716865452 0.771882548116043 706 0.432178084612768 4 3 1 -6.86994570394834 LTS-039 chr6 73100508 73102366 1859 * RIMS1 NA 0 NA 1.219 1 NA NA NA NA NA LTS-039 chr6 73102367 74190448 1088082 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, KHDC3L, RIMS1, MTO1, DPPA5, NA, OOEP, DDX43, KCNQ5, KHDC1) 0.142826517015526 5 0.127157382797854 0.987928376149665 609 0.464427062108942 4 4 0 -6.84729320809072 LTS-039 chr6 74190449 74214299 23851 * MTO1 NA 0 NA 1.09959825739921 87 0.372652709593515 5 NA NA -5.76447580386749 LTS-039 chr6 74214300 74214574 275 * character(0) NA 0 NA 3.037 1 NA NA NA NA NA LTS-039 chr6 74214575 74226245 11671 * EEF1A1 0.45 1 NA 1.67322405471133 79 0.728967488185549 8 8 0 -5.76442748971791 LTS-039 chr6 74226246 74304227 77982 * c(EEF1A1, SLC17A5) 0.349853308749703 7 0.0866129870389512 1.90719367523038 92 0.816818938085952 9 6 3 -6.73348305377018 LTS-039 chr6 74304228 85448353 11144126 * c(HMGN3-AS1, LOC100506804, MRAP2, RWDD2A, COL12A1, COX7A2, RIPPLY2, IRAK1BP1, CD109, PRSS35, LCA5, CEP162, DOPEY1, IBTK, SENP6, SLC17A5, FILIP1, HTR1B, IMPG1, ME1, MYO6, CYB5R4, PGM3, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, TBX18, HMGN3, SNAP91) 0.348201685513474 25 0.102312153074142 0.696451140495176 4070 0.344165170336387 3 2 1 -6.78788085358663 LTS-039 chr6 85448354 85453929 5576 * TBX18 NA 0 NA 2.746 1 NA NA NA NA NA LTS-039 chr6 85453930 86445372 991443 * c(SYNCRIP, SNORD50A, SNHG5, NT5E, SNX14, SNORD50B, TBX18) 0.409715504610328 4 0.0483140766236922 1.02747234231898 478 0.451033079873526 5 3 2 -6.74013142599559 LTS-039 chr6 86445373 87797968 1352596 * c(CGA, HTR1E) 0.343423914327543 3 0.0262106848441623 0.419302686262246 70 0.193051820460266 3 2 1 -10.6608189552824 LTS-039 chr6 87797969 87865181 67213 * c(CGA, ZNF292) NA 0 NA 2.732 1 NA NA NA NA NA LTS-039 chr6 87865182 88757501 892320 * c(SLC35A1, CFAP206, C6orf163, ZNF292, ORC3, GJB7, AKIRIN2, RARS2, SMIM8, LINC01590) 0.332873231902134 21 0.0876621219173231 0.807240209173249 841 0.412041517388818 4 3 1 -6.85992249767669 LTS-039 chr6 88757502 89321967 564466 * c(CNR1, SPACA1, RNGTT) 0.388 1 NA 0.512658352736798 205 0.162974974386937 2 2 0 -5.77976710218816 LTS-039 chr6 89321968 89874963 552996 * c(PNRC1, PM20D2, SRSF12, RNGTT) 0.350552689183456 10 0.0657879590468921 0.996585441824238 338 1.03068833294104 6 4 2 -6.75191690532383 LTS-039 chr6 89874964 89975570 100607 * c(PM20D2, GABRR1, GABRR2) 0.454661701364667 2 0.0615182899632296 0.53627476919438 127 0.162797268884203 2 1 1 -6.82298519784383 LTS-039 chr6 89975571 89977311 1741 * GABRR2 NA 0 NA 0.734 1 NA NA NA NA NA LTS-039 chr6 89977312 90571943 594632 * c(ANKRD6, MDN1, GABRR2, UBE2J1, LYRM2, RRAGD, CASP8AP2) 0.371933639075694 30 0.0888294569036257 0.783730022995808 1154 0.399616071700258 3 2 1 -6.75404226541033 LTS-039 chr6 90571944 96653455 6081512 * c(MIR4464, MIR4643, FUT9, EPHA7, BACH2, TSG1, MAP3K7, MANEA, GJA10, CASP8AP2) 0.380367646688523 25 0.0492094841807281 0.625054512734083 897 0.300361390677721 3 2 1 -7.3629373792817 LTS-039 chr6 96653456 96969653 316198 * FUT9 NA 0 NA 1.789 1 NA NA NA NA NA LTS-039 chr6 96969654 97002738 33085 * UFL1 NA 0 NA 1.12095091663491 116 0.587263458968698 5 NA NA -5.76452399341833 LTS-039 chr6 97002739 99825373 2822635 * c(MIR2113, KLHL32, UFL1, MMS22L, FBXL4, NDUFAF4, COQ3, POU3F2, GPR63, FAXC, FHL5) 0.359227736269292 10 0.0902293374315324 0.669850206083163 719 0.356073238159075 3 2 1 -6.79112028257903 LTS-039 chr6 99825374 99828044 2671 * COQ3 NA 0 NA 0.774 1 NA NA NA NA NA LTS-039 chr6 99828045 100016860 188816 * c(TSTD3, PNISR, COQ3, USP45, CCNC) 0.382516985521023 22 0.0686580081121065 0.906505736212675 495 0.363655385065626 3 2 1 -6.79946868744627 LTS-039 chr6 100016861 100054591 37731 * TSTD3 NA 0 NA 0.662 1 NA NA NA NA NA LTS-039 chr6 100054592 105725940 5671349 * c(LIN28B-AS1, ASCC3, BVES, BVES-AS1, GRIK2, LIN28B, PREP, HACE1, PRDM13, POPDC3, SIM1, MCHR2-AS1, MCHR2) 0.326748861291716 16 0.144368380079111 0.61396820450869 1263 0.335373558287442 3 2 1 -7.38125567646835 LTS-039 chr6 105725941 105726050 110 * PREP NA 0 NA 0.916 1 NA NA NA NA NA LTS-039 chr6 105726051 107069436 1343386 * c(AIM1, PREP, PRDM1, RTN4IP1, ATG5) 0.393405620662499 20 0.0632406431606164 0.773264188635456 603 0.332540120897665 3 2 1 -6.85705394400365 LTS-039 chr6 107069437 107070626 1190 * RTN4IP1 NA 0 NA 1.424 1 NA NA NA NA NA LTS-039 chr6 107070627 107351472 280846 * c(LOC100422737, C6orf203, QRSL1, RTN4IP1) 0.395822222077532 3 0.0756394958558909 1.197668705434 166 0.560205303764457 5 3 2 -6.752834952242 LTS-039 chr6 107351473 107360862 9390 * C6orf203 NA 0 NA 0.476 1 NA NA NA NA NA LTS-039 chr6 107360863 109484850 2123988 * c(SEC63, FOXO3, LACE1, SCML4, SESN1, CEP57L1, OSTM1, LINC00222, C6orf203, SOBP, PDSS2, BEND3, NR2E1, ARMC2, SNX3) 0.357097073992728 18 0.0612160003006604 0.748231607853258 1415 0.376899972998398 3 2 1 -6.78736367748648 LTS-039 chr6 109484851 109849449 364599 * c(LOC100996634, CCDC162P, AK9, CEP57L1, PPIL6, MICAL1, SMPD2, CD164, ZBTB24) 0.368335073768149 23 0.0550158798491229 0.936686526646194 680 0.364495961716447 3 2 1 -6.85686656072246 LTS-039 chr6 109849450 110575520 726071 * c(AK9, GPR6, CDC40, METTL24, WASF1, FIG4) 0.340698414177711 9 0.146114205712898 0.662836107837155 572 0.373921402895332 3 2 1 -6.77439435814915 LTS-039 chr6 110575521 110620095 44575 * METTL24 NA 0 NA 1.28 1 NA NA NA NA NA LTS-039 chr6 110620096 111347282 727187 * c(GTF3C6, CDK19, AMD1, METTL24, RPF2, DDO, SLC22A16) 0.334483686671906 7 0.0449904751824523 1.15688752613857 540 0.861313775549429 6 4 2 -6.85762063113024 LTS-039 chr6 111347283 111368126 20844 * GSTM2P1 NA 0 NA 0.385 1 NA NA NA NA NA LTS-039 chr6 111368127 112408674 1040548 * c(TRAF3IP2, SLC16A10, FYN, GSTM2P1, TUBE1, REV3L, FAM229B, TRAF3IP2-AS1, WISP3, MFSD4B) 0.337609872813336 11 0.060647116397012 0.853300832331918 855 0.478518288933514 4 3 1 -6.9891753556204 LTS-039 chr6 112408675 117083256 4674582 * c(TRAPPC3L, COL10A1, NT5DC1, FAM26D, ZUFSP, FAM162B, HS3ST5, TSPYL4, FRK, FAM26E, LINC01268, FLJ34503, DSE, HDAC2, RSPH4A, KPNA5, LAMA4, MARCKS, FAM26F, RFPL4B, TUBE1, RWDD1, FAM229B, TSPYL1, TPI1P3) 0.360195264272986 49 0.100038308988638 0.71669991142544 2036 0.371330935001777 3 2 1 -6.74137664198486 LTS-039 chr6 117083257 117086261 3005 * FAM162B NA 0 NA 0.305 1 NA NA NA NA NA LTS-039 chr6 117086262 117199101 112840 * c(FAM162B, GPRC6A, RFX6) NA 0 NA 0.397938473863132 93 0.0960176760258074 1 NA NA -5.88139375334535 LTS-039 chr6 117199102 117201723 2622 * RFX6 NA 0 NA 0.625 1 NA NA NA NA NA LTS-039 chr6 117201724 125229778 8028055 * c(LOC100287632, TRDN, SMPDL3A, NUS1, CLVS2, NKAIN2, FABP7, TBC1D32, RFX6, SLC35F1, BRD7P3, VGLL2, MCM9, ASF1A, GJA1, DCBLD1, LOC285762, HSF2, CEP85L, MAN1A1, PLN, PKIB, GOPC, SERINC1, ROS1, MIR548B, RNF217-AS1, FAM184A) 0.328993061792684 64 0.129804835760864 0.658272260922936 2595 0.356578892466998 3 2 1 -7.01443149830861 LTS-039 chr6 125229779 125229931 153 * RNF217-AS1 NA 0 NA 0.956 1 NA NA NA NA NA LTS-039 chr6 125229932 125614207 384276 * c(RNF217, HDDC2, TPD52L1, RNF217-AS1) 0.0890663464976268 3 0.204381995293128 0.798449034663818 488 0.463796687914619 4 4 0 -6.74664314549239 LTS-039 chr6 125614208 125619795 5588 * HDDC2 NA 0 NA 1.691 1 NA NA NA NA NA LTS-039 chr6 125619796 126342469 722674 * c(NCOA7, HINT3, HEY2, HDDC2, TRMT11, LOC643623) 0.322971930971207 8 0.129173125798563 1.08462207504734 382 1.18778189693806 7 5 2 -6.76197248695291 LTS-039 chr6 126342470 127764807 1422338 * c(MIR5695, CENPW, SOGA3, ECHDC1, TRMT11, RNF146, RSPO3, KIAA0408) 0.385278804289831 2 0.0247487373415292 0.649451306680094 324 0.431552524844133 3 2 1 -6.96055488019563 LTS-039 chr6 127764808 128540204 775397 * c(C6orf58, SOGA3, THEMIS, PTPRK, KIAA0408) 0.470875131669658 5 0.0172568826848884 0.464705861249112 476 0.25814505407415 2 1 1 -9.05721733319407 LTS-039 chr6 128540205 128556624 16420 * PTPRK NA 0 NA 0.561 1 NA NA NA NA NA LTS-039 chr6 128556625 133111021 4554397 * c(SMLR1, LINC01013, TMEM200A, SLC18B1, TAAR1, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, TAAR6, ARG1, LAMA2, ENPP1, ENPP3, VNN3, PTPRK, CTAGE9, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7) 0.340387319635312 31 0.106171478258989 0.610292710946811 2488 0.316267765002265 3 2 1 -7.36325922145678 LTS-039 chr6 133111022 133111358 337 * SLC18B1 NA 0 NA 1.192 1 NA NA NA NA NA LTS-039 chr6 133111359 133138783 27425 * c(SLC18B1, SNORA33, RPS12) 0.382 1 NA 1.45095354823452 64 0.719219869879969 7 7 0 -5.76441499919752 LTS-039 chr6 133138784 133595813 457030 * c(EYA4, LINC00326) NA 0 NA 0.308 1 NA NA NA NA NA LTS-039 chr6 133595814 138491880 4896067 * c(LOC100130476, LINC00271, NHEG1, MIR3662, HBS1L, MTFR2, IL22RA2, LINC01312, SLC2A12, LINC01010, OLIG3, EYA4, PDE7B, SLC35D3, IFNGR1, HMGA1P7, MAP3K5, MYB, PEX7, IL20RA, AHI1, ARFGEF3, PERP, SGK1, ALDH8A1, TCF21, TNFAIP3, MAP7, TBPL1, BCLAF1) 0.362777029665938 53 0.0793655127582794 0.761137573968457 2555 0.486274091528386 3 2 1 -6.79622082844498 LTS-039 chr6 138491881 143661473 5169593 * c(LOC100132735, MIR3145, MIR3668, GVQW2, LINC01277, MIR4465, CITED2, LOC153910, TXLNB, HEBP2, CCDC28A, HIVEP2, ECT2L, FLJ46906, NMBR, AIG1, VTA1, HECA, ADGRG6, ARFGEF3, NHSL1, ABRACL, PBOV1, LINC01625, REPS1) 0.354333106641633 35 0.110655039718605 0.668458806651412 2002 0.326437048865656 3 2 1 -6.85686523120375 LTS-039 chr6 143661474 143748090 86617 * ADAT2 NA 0 NA 0.954 1 NA NA NA NA NA LTS-039 chr6 143748091 144416785 668695 * c(ADAT2, ZC2HC1B, FUCA2, PHACTR2-AS1, PLAGL1, HYMAI, SF3B5, LTV1, PEX3, PHACTR2) 0.367854432386798 11 0.184920769274549 1.14467237251613 639 0.729596248283792 6 4 2 -6.74209964887593 LTS-039 chr6 144416786 144507715 90930 * STX11 NA 0 NA 0.448 1 NA NA NA NA NA LTS-039 chr6 144507716 147890684 3382969 * c(LOC100507557, RAB32, STXBP5, SHPRH, GRM1, SAMD5, KATNBL1P6, STXBP5-AS1, UTRN, EPM2A, ADGB, FBXO30, STX11) 0.345597545674835 14 0.118211140026537 0.653918042253612 1604 0.313734133853174 3 2 1 -6.90313558502919 LTS-039 chr6 147890685 150211300 2320616 * c(UST-AS1, RAET1E-AS1, UST, KATNA1, GINM1, RAET1E, TAB2, SASH1, ZC3H12D, NUP43, SUMO4, SAMD5, PCMT1, RPS18P9, LRP11, PPIL4, LATS1) 0.32784897071987 39 0.0959537112875346 0.864278569297092 1256 0.456679868341851 4 3 1 -6.79874047938792 LTS-039 chr6 150211301 150211933 633 * c(RAET1E-AS1, RAET1E) NA 0 NA 0.567 1 NA NA NA NA NA LTS-039 chr6 150211934 150386623 174690 * c(RAET1E-AS1, RAET1E, RAET1L, RAET1G, RAET1K, ULBP3, ULBP2, ULBP1) 0.372196998452617 4 0.0310308985797489 0.565037778235186 126 0.282576125324088 3 2 1 -6.80246296428478 LTS-039 chr6 150386624 152443143 2056520 * c(ESR1, SYNE1, MTHFD1L, IYD, RMND1, PLEKHG1, ZBTB2, ULBP3, ARMT1, CCDC170, PPP1R14C, AKAP12) 0.247724197003637 29 0.128536370425524 0.933682698891644 1305 0.531154172919521 5 4 1 -6.81556182066332 LTS-039 chr6 152443144 153311302 868159 * c(SYNE1, FBXO5, MTRF1L, VIP, MYCT1) 0.376650804493058 27 0.0880133213175411 0.603824734247613 1248 0.260251688440498 3 2 1 -6.93481165612738 LTS-039 chr6 153311303 153314084 2782 * MTRF1L NA 0 NA 1.462 1 NA NA NA NA NA LTS-039 chr6 153314085 153345699 31615 * c(RGS17, MTRF1L) 0.404571080174603 2 0.000707106781186548 1.10694260100972 60 0.455067697205095 5 3 2 -10.4874572492959 LTS-039 chr6 153345700 154414688 1068989 * c(RGS17, OPRM1) 0.339478643443161 4 0.0663877498740041 0.437862298264299 95 0.232367713573358 2 1 1 -8.10454336119143 LTS-039 chr6 154414689 154415321 633 * OPRM1 NA 0 NA 0.639 1 NA NA NA NA NA LTS-039 chr6 154415322 159652981 5237660 * c(C6orf99, MIR3918, MIR3692, MIR4466, SYNJ2-IT1, EZR-AS1, TAGAP, CNKSR3, OSTCP1, SCAF8, IPCEF1, TIAM2, GTF2H5, CLDN20, OPRM1, NOX3, TFB1M, SNX9, TULP4, ARID1B, TMEM181, DYNLT1, TMEM242, EZR, ZDHHC14, RSPH3, FNDC1, SERAC1, SYNJ2, SYTL3) 0.351575691042759 62 0.0836423112080243 0.837907843834635 2834 1.02611709912899 3 2 1 -6.844758906673 LTS-039 chr6 159652982 159693130 40149 * FNDC1 0 1 NA 0.517387037780621 130 0.274555869581703 2 2 0 -5.76461901339726 LTS-039 chr6 159693131 160100050 406920 * FNDC1 NA 0 NA 1.196 1 NA NA NA NA NA LTS-039 chr6 160100051 160471647 371597 * c(LOC100129518, AIRN, PNLDC1, MRPL18, IGF2R, ACAT2, MAS1, SOD2, SNORA20, SNORA29, TCP1, WTAP) 0.366170280070073 40 0.0770627449982588 1.10022823107497 687 0.61851454887364 6 4 2 -6.75567083681225 LTS-039 chr6 160471648 160477384 5737 * IGF2R NA 0 NA 0.599 1 NA NA NA NA NA LTS-039 chr6 160477385 164891989 4414605 * c(CAHM, PACRG, PACRG-AS1, IGF2R, DKFZp451B082, LPA, MAP3K4, PARK2, PLG, AGPAT4, SLC22A1, SLC22A3, SLC22A2, LOC729603, AGPAT4-IT1, LPAL2, QKI) 0.368051830329131 33 0.108905070561197 0.701129588382847 1677 0.337803258566054 3 2 1 -6.73827586702692 LTS-039 chr6 164891990 165108541 216552 * character(0) NA 0 NA 0.409 1 NA NA NA NA NA LTS-039 chr6 165108542 166733371 1624830 * c(PDE10A, C6orf118, PRR18, LINC00602, T, LINC00473) 0.365012920156635 18 0.112458227538835 0.524204799179772 478 0.275907279771425 2 1 1 -6.93301444374948 LTS-039 chr6 166733372 167590641 857270 * c(LOC100289495, MIR1913, MIR3939, RPS6KA2-IT1, FGFR1OP, SFT2D1, CCR6, GPR31, TCP10L2, MPC1, RPS6KA2, RNASET2) 0.357292967051893 24 0.0728357169709111 0.768692398768489 697 0.381112189932519 3 2 1 -6.77589762784261 LTS-039 chr6 167590642 167591884 1243 * TCP10L2 NA 0 NA 0.21 1 NA NA NA NA NA LTS-039 chr6 167591885 167622096 30212 * TCP10L2 0.387402979631582 5 0.140788138704935 0.403811761451426 150 0.459338635543439 3 2 1 -6.76843698790031 LTS-039 chr6 167622097 167622109 13 * character(0) NA 0 NA 0.519 1 NA NA NA NA NA LTS-039 chr6 167622110 167789772 167663 * c(UNC93A, TCP10, TTLL2) 0.334924460516803 9 0.0795614716918797 0.610882697318968 245 0.365251544783699 3 2 1 -6.87219005575373 LTS-039 chr6 167789773 169009014 1219242 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, FRMD1) 0.350075358358635 16 0.0647018482476866 0.922753802681564 761 0.391421498556826 3 2 1 -7.10322876414737 LTS-039 chr6 169009015 169051310 42296 * SMOC2 NA 0 NA 2.939 1 NA NA NA NA NA LTS-039 chr6 169051311 169115479 64169 * SMOC2 0.308 1 NA 1.54684900991114 87 0.610804239971335 8 8 0 -5.76459425757246 LTS-039 chr6 169115480 170089152 973673 * c(WDR27, THBS2) 0.379735981021207 18 0.0646358578317567 0.771307918254663 327 0.31076826079146 3 2 1 -6.78312771507625 LTS-039 chr6 170089153 170102149 12997 * WDR27 NA 0 NA 1.332 1 NA NA NA NA NA LTS-039 chr6 170102150 170156900 54751 * c(WDR27, C6orf120, PHF10, ERMARD, TCTE3) 0.277 1 NA 1.30511898420668 163 0.475578356644934 6 6 0 -5.76465463059861 LTS-039 chr6 170156901 170890603 733703 * c(MIR4644, LOC154449, DLL1, LINC00242, PDCD2, ERMARD, PSMB1, TBP, LINC00574, FAM120B) 0.349881695452489 5 0.089161650949273 0.937103688743941 457 0.438200572179459 6 4 2 -6.92206238001258 LTS-039 chr6 170890604 170893599 2996 * PDCD2 NA 0 NA 1.25448053838413 45 0.57018943511713 6 NA NA -5.7644101463871 LTS-039 chr7 193047 228594 35548 * FAM20C 0.205 1 NA 0.692015711978866 47 0.246091168248135 3 3 0 -5.76467489197985 LTS-039 chr7 228595 913210 684616 * c(WI2-2373I1.2, SUN1, HRAT92, LOC442497, PDGFA, GET4, DNAAF5, PRKAR1B, FAM20C) 0.168809935590676 22 0.0776514718614598 0.652832141876603 532 0.350500742974061 2 2 0 -6.8805359953968 LTS-039 chr7 913211 917672 4462 * c(SUN1, GET4) NA 0 NA 1.54111769488247 40 0.641145071387204 8 NA NA -5.76442388413711 LTS-039 chr7 917673 1131155 213483 * c(ADAP1, GPR146, GPER1, MIR339, GET4, CYP2W1, C7orf50, COX19) 0.132993843871771 3 0.0352183664205672 0.744124382216092 453 0.364699397142944 3 3 0 -6.82221675074775 LTS-039 chr7 1131156 1485067 353912 * c(GPER1, UNCX, MICALL2, C7orf50, ZFAND2A) NA 0 NA 0.454311811892185 189 0.204866258545856 2 NA NA -5.88443295134786 LTS-039 chr7 1485068 1486358 1291 * MICALL2 NA 0 NA 1.03 1 NA NA NA NA NA LTS-039 chr7 1486359 1609586 123228 * c(TMEM184A, INTS1, MAFK, MICALL2, PSMG3) 0.125600584193216 15 0.0476373203036683 0.656519713475247 477 0.346610169988668 3 3 0 -6.74690101123721 LTS-039 chr7 1609587 2041813 432227 * c(MIR4655, PSMG3-AS1, TFAMP1, ELFN1, MAD1L1, PSMG3) 0.228439890970021 13 0.0402098661193162 0.421516092848972 248 0.236952291923169 1 1 0 -6.95937267555997 LTS-039 chr7 2041814 2054138 12325 * MAD1L1 NA 0 NA 0.513 1 NA NA NA NA NA LTS-039 chr7 2054139 5942389 3888251 * c(RBAK-RBAKDN, MIR4648, MIR4656, RNF216-IT1, AMZ1, BRAT1, SDK1, FOXK1, MMD2, SLC29A4, IQCE, WIPI2, GNA12, SNX8, MRM2, RBAKDN, LFNG, ZNF815P, RNF216P1, NUDT1, CCZ1, RNF216, CHST12, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, TTYH3, MAD1L1, CARD11, TNRC18, EIF3B, AP5Z1) 0.144624976960889 56 0.0662472126343304 0.618118409467746 3479 0.316881897769215 3 3 0 -7.24424931207149 LTS-039 chr7 5942390 5944678 2289 * CCZ1 NA 0 NA 0.025 1 NA NA NA NA NA LTS-039 chr7 5944679 5983601 38923 * c(RSPH10B, CCZ1) 0.13247156485797 4 0.0398455350907309 0.252485709775123 78 0.236131258756589 3 3 0 -7.21489346662855 LTS-039 chr7 5983602 6022570 38969 * c(RSPH10B, PMS2) NA 0 NA 0.0779102850107301 39 0.0567474339072766 0 NA NA -8.47711006789939 LTS-039 chr7 6022571 6026483 3913 * PMS2 NA 0 NA 0.477 1 NA NA NA NA NA LTS-039 chr7 6026484 6797605 771122 * c(ANKRD61, KDELR2, DAGLB, EIF2AK1, GRID2IP, PMS2CL, PMS2, ZNF853, ZDHHC4, RAC1, RSPH10B2, ZNF12, C7orf26, AIMP2, USP42, FAM220A, CYTH3) 0.144157154436763 34 0.0967331445150618 0.597605670529829 1319 0.398304863367184 2 2 0 -6.78993672577807 LTS-039 chr7 6797606 6803517 5912 * RSPH10B2 NA 0 NA 0.346 1 NA NA NA NA NA LTS-039 chr7 6803518 6838250 34733 * RSPH10B2 NA 0 NA 0.298542649601961 47 0.197882497675303 1 NA NA -5.77799145369702 LTS-039 chr7 6838251 6838492 242 * RSPH10B2 NA 0 NA 0.472 1 NA NA NA NA NA LTS-039 chr7 6838493 7918567 1080075 * c(LOC100131257, CCZ1B, COL28A1, MIOS, C1GALT1, RPA3, UMAD1) 0.242583017965706 10 0.0931269145962767 0.522061020824318 524 0.292041071858015 2 2 0 -7.17268457433504 LTS-039 chr7 7918568 7918637 70 * UMAD1 0.197 1 NA 1.24 1 NA NA NA NA NA LTS-039 chr7 7918638 17383041 9464404 * c(ISPD-AS1, LRRC72, ARL4A, AGR2, GLCCI1, AGR3, DGKB, PER4, AHR, ETV1, VWDE, THSD7A, SOSTDC1, TSPAN13, BZW2, NXPH1, ICA1, AGMO, MEOX2, NDUFA4, TMEM106B, ANKMY2, UMAD1, ISPD, SCIN, PHF14) 0.127555763090289 66 0.0587995211118567 0.630892852071743 2332 0.358071688399045 3 3 0 -7.3216904622722 LTS-039 chr7 17383042 18066421 683380 * c(AHR, PRPS1L1, SNX13) 0.11676487294614 6 0.08480959065263 0.848870093030958 324 0.37943293480442 4 4 0 -6.77810595861679 LTS-039 chr7 18066422 20201545 2135124 * c(MIR3146, MACC1-AS1, PRPS1L1, TWISTNB, FERD3L, TMEM196, MACC1, TWIST1, HDAC9) 0.155 1 NA 0.632572798921117 648 0.387622750164553 3 3 0 -5.87935885846365 LTS-039 chr7 20201546 20370732 169187 * c(MACC1, ITGB8) NA 0 NA 1.426 1 NA NA NA NA NA LTS-039 chr7 20370733 20450432 79700 * ITGB8 0.105565264909725 3 0.0312623309005156 1.0571430260804 108 0.461332294441624 4 4 0 -6.8034889085565 LTS-039 chr7 20450433 20662802 212370 * c(ABCB5, ITGB8) NA 0 NA 0.453 1 NA NA NA NA NA LTS-039 chr7 20662803 21956544 1293742 * c(SP8, RPL23P8, ABCB5, CDCA7L, SP4, DNAH11) 0.137293670234458 35 0.0747476426653952 0.624628098504689 926 0.355508019288802 3 3 0 -6.86880445943772 LTS-039 chr7 21956545 21985251 28707 * CDCA7L NA 0 NA 1.549 1 NA NA NA NA NA LTS-039 chr7 21985252 22771636 786385 * c(LOC100506178, STEAP1B, IL6, CDCA7L, RAPGEF5) 0.101562614204296 10 0.0587746165921612 0.785196934071179 387 0.360646915678231 4 4 0 -6.79796946820661 LTS-039 chr7 22771637 22981404 209768 * c(TOMM7, SNORD93, FAM126A) 0.327 1 NA 1.3696455634311 62 0.683431662171723 7 7 0 -5.76496310840735 LTS-039 chr7 22981405 23214295 232891 * c(KLHL7-AS1, KLHL7, FAM126A) 0.272129934687222 5 0.0233730614169389 0.854801401077385 263 0.351625888869902 8 6 2 -7.17701401525414 LTS-039 chr7 23214296 23571734 357439 * c(GPNMB, IGF2BP3, NUPL2, MALSU1, RPS2P32, TRA2A, KLHL7) 0.278339989807874 7 0.0577803723471165 1.38994714052009 452 0.78325707037128 8 6 2 -6.74152736497037 LTS-039 chr7 23571735 23624628 52894 * CLK2P1 NA 0 NA 0.502 1 NA NA NA NA NA LTS-039 chr7 23624629 25268142 1643514 * c(CLK2P1, C7orf31, DFNA5, OSBPL3, FAM221A, NPY, MPP6, CYCS, STK31, NPVF, CCDC126) 0.27257325173943 13 0.129974750999707 1.06500834978257 815 0.797958043535311 5 4 1 -6.75521111641356 LTS-039 chr7 25989526 26251993 262468 * c(CBX3, HNRNPA2B1, MIR148A, NFE2L3) 0.345 1 NA 1.7014836933263 154 0.641928282630345 9 9 0 -5.76548255445015 LTS-039 chr7 26251994 26252074 81 * CBX3 NA 0 NA 0.771 1 NA NA NA NA NA LTS-039 chr7 26252075 26412562 160488 * c(CBX3, SNX10) 0.331327971495072 2 0.00212132034355964 1.0436094233419 72 0.515077864382805 19 13 6 -10.7866381298466 LTS-039 chr7 26412563 26575976 163414 * c(SNX10, LOC441204, KIAA0087) 0.211466915228831 5 0.13041165592078 3.09682647826877 101 2.04272442382304 20 16 4 -6.73411384714811 LTS-039 chr7 26575977 27187486 611510 * c(HOXA-AS3, HOTAIRM1, C7orf71, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, SKAP2, KIAA0087) 0.25643374777714 6 0.125549060795637 1.41770656285807 425 0.657081840374588 8 6 2 -6.7622594168689 LTS-039 chr7 27187487 27191205 3719 * HOXA-AS3 NA 0 NA 2.058 1 NA NA NA NA NA LTS-039 chr7 27191206 27238036 46831 * c(HOXA-AS3, HOXA10-HOXA9, HOXA10-AS, HOXA11-AS, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, MIR196B) 0.38 1 NA 2.37749080048372 308 0.844458370148882 12 12 0 -5.76442267252905 LTS-039 chr7 27238037 27238757 721 * HOXA13 NA 0 NA 0.992 1 NA NA NA NA NA LTS-039 chr7 27238758 27689268 450511 * c(HOTTIP, HIBADH, EVX1, HOXA13) 0.270593264142167 3 0.0548482755730145 0.916022702771331 212 0.351084743433046 4 3 1 -6.87626245828634 LTS-039 chr7 27689269 27702204 12936 * HIBADH NA 0 NA 4.39 1 NA NA NA NA NA LTS-039 chr7 27702205 30673735 2971531 * c(JAZF1-AS1, MIR550B1, LOC100506497, MIR550A3, NOD1, HIBADH, CHN2, JAZF1, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, LOC401320, DPY19L2P3, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, PLEKHA8, TAX1BP1, CREB5, SCRN1, TRIL) 0.284736531088072 41 0.0799848461257262 1.25089369324349 1804 0.699427226254809 7 5 2 -6.86353265481923 LTS-039 chr7 30673736 30692198 18463 * CRHR2 NA 0 NA 0.705 1 NA NA NA NA NA LTS-039 chr7 30692199 30791810 99612 * c(INMT-FAM188B, INMT, CRHR2) NA 0 NA 0.697485675204618 120 0.276463110505883 3 NA NA -5.76470885637865 LTS-039 chr7 30791811 30791848 38 * c(INMT-FAM188B, INMT) 0.252 1 NA 2.196 1 NA NA NA NA NA LTS-039 chr7 30791849 30932051 140203 * c(INMT-FAM188B, INMT, AQP1, FAM188B) 0.258871344606508 5 0.14716487352626 1.5198519608079 186 0.704303482482781 9 7 2 -6.74062936352183 LTS-039 chr7 30932052 30951437 19386 * AQP1 NA 0 NA 0.787 1 NA NA NA NA NA LTS-039 chr7 30951438 35678035 4726598 * c(DPY19L1P1, LOC100130673, MIR550B2, PPP1R17, FKBP9, ADCYAP1R1, BMPER, CCDC129, AVL9, DPY19L1, LSM5, KBTBD2, GHRHR, BBS9, AQP1, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, DPY19L2P1, TBX20, RP9, NEUROD6, HERPUD2, MIR550A2) 0.315650281968479 49 0.100194924817496 0.949164507951432 2231 0.525301801156202 4 3 1 -6.7923154094859 LTS-039 chr7 35678036 36493328 815293 * c(KIAA0895, ANLN, HERPUD2, EEPD1, SEPT7) 0.271088552704108 23 0.0772295740932481 1.21656883155015 582 0.655062667540598 5 4 1 -6.80627425894357 LTS-039 chr7 36493329 36552590 59262 * c(AOAH, ANLN) NA 0 NA 0.382 1 NA NA NA NA NA LTS-039 chr7 36552591 39244001 2691411 * c(MIR1200, TRG-AS1, AOAH-IT1, POU6F2, VPS41, AMPH, AOAH, FAM183BP, GPR141, TARP, NME8, EPDR1, SFRP4, STARD3NL, ELMO1) 0.320515515849586 30 0.112133459073009 0.801273764571976 1188 0.470828779497683 4 3 1 -6.84025478994144 LTS-039 chr7 39244002 39246907 2906 * POU6F2 NA 0 NA 1.25 1 NA NA NA NA NA LTS-039 chr7 39246908 40229260 982353 * c(POU6F2-AS1, POU6F2, MPLKIP, LINC00265, YAE1D1, RALA, LOC646999, SUGCT, CDK13) 0.343923110729369 12 0.0958345717970042 1.19701424092109 521 0.520018220110613 6 4 2 -6.74536159178712 LTS-039 chr7 40229261 40234474 5214 * SUGCT NA 0 NA 0.681 1 NA NA NA NA NA LTS-039 chr7 40234475 42007495 1773021 * c(GLI3, INHBA-AS1, INHBA, SUGCT) 0.207875656683608 5 0.184962969266824 0.857044092555685 344 0.515164396196807 4 3 1 -6.87717823312817 LTS-039 chr7 42007496 42011959 4464 * GLI3 NA 0 NA 2.028 1 NA NA NA NA NA LTS-039 chr7 42011960 43666230 1654271 * c(MIR3943, LOC100506895, HECW1, GLI3, COA1, PSMA2, MRPL32, C7orf25, STK17A) 0.297007750646095 12 0.0470108788183408 1.1714465742718 502 0.433109595527734 7 5 2 -6.99319366899997 LTS-039 chr7 43666231 43689932 23702 * c(COA1, STK17A) 0.280397947462472 3 0.0880018939190136 2.19502136772306 84 3.29246349462736 15 11 4 -6.73312589662123 LTS-039 chr7 43689933 43810696 120764 * c(COA1, BLVRA) NA 0 NA 0.786 1 NA NA NA NA NA LTS-039 chr7 43810697 44260496 449800 * c(URGCP-MRPS24, MIR4649, YKT6, AEBP1, LINC00957, GCK, POLM, SPDYE1, DBNL, RASA4CP, UBE2D4, PGAM2, POLD2, URGCP, MYL7, BLVRA, MRPS24, CAMK2B, POLR2J4) 0.277907265974389 29 0.11010469715219 1.00990262735512 1036 0.467889735034918 4 3 1 -6.77112043908917 LTS-039 chr7 44260497 44265329 4833 * CAMK2B NA 0 NA 0.558 1 NA NA NA NA NA LTS-039 chr7 44265330 44611128 345799 * c(NUDCD3, NPC1L1, DDX56, CAMK2B) 0.218226598490113 5 0.206032036343866 0.845256195785792 450 0.445121127624669 5 4 1 -6.80382750618455 LTS-039 chr7 44611129 44611133 5 * DDX56 NA 0 NA 1.688 1 NA NA NA NA NA LTS-039 chr7 44611134 44664027 52894 * c(TMED4, OGDH, DDX56) 0.348489764385969 3 0.0148436293854749 1.7193808870108 107 0.575986765023842 9 6 3 -6.73329294035212 LTS-039 chr7 44664028 44795931 131904 * c(OGDH, ZMIZ2) 0.34 1 NA 0.709296758635004 153 0.213513696612678 3 3 0 -5.76442329879306 LTS-039 chr7 44795932 44918423 122492 * c(PPIA, PURB, ZMIZ2, H2AFV) 0.32219383555194 11 0.0664576420121733 1.18199022028884 371 0.52216729969995 7 5 2 -6.76009245414161 LTS-039 chr7 44918424 44924929 6506 * PURB 0.276 1 NA 1.9237024234416 126 0.671542069974794 10 10 0 -5.76441601894362 LTS-039 chr7 44924930 45002197 77268 * PURB NA 0 NA 0.671 1 NA NA NA NA NA LTS-039 chr7 45002198 47409091 2406894 * c(RAMP3, ADCY1, NACAD, SNHG15, IGFBP1, IGFBP3, MYO1G, SEPT7P2, TNS3, SNORA5B, SNORA5C, SNORA9, CCM2, TBRG4) 0.294350017368078 21 0.0917957619106781 0.80084865937808 1097 0.323552111110132 4 3 1 -6.88903335652962 LTS-039 chr7 47409092 47955177 546086 * c(PKD1L1, C7orf65, TNS3, C7orf69, LINC00525) 0.266007471408963 8 0.0756182848258277 1.62995483795371 465 0.715130046921545 8 6 2 -6.74425348373745 LTS-039 chr7 47955178 47968748 13571 * PKD1L1 NA 0 NA 0.911 1 NA NA NA NA NA LTS-039 chr7 47968749 48260952 292204 * c(C7orf57, ABCA13, PKD1L1, SUN3, HUS1, UPP1) 0.389528830214049 3 0.0518298498293535 1.04281780330338 336 0.520281808914778 5 3 2 -6.80146855713893 LTS-039 chr7 48260953 48266849 5897 * ABCA13 NA 0 NA 0.65 1 NA NA NA NA NA LTS-039 chr7 48266850 48964453 697604 * c(ABCA13, CDC14C) 0.291803320971104 15 0.0973608897717295 0.722465382490226 501 0.327570364740596 4 3 1 -6.90314799950363 LTS-039 chr7 48964454 49951859 987406 * c(CDC14C, VWC2) 0.371711313073224 2 0.0728319984622144 0.427645599930614 83 0.197070952525027 2 1 1 -7.74178092591786 LTS-039 chr7 49951860 49951966 107 * VWC2 NA 0 NA 0.574 1 NA NA NA NA NA LTS-039 chr7 49951967 51384457 1432491 * c(DDC-AS1, C7orf72, IKZF1, ZPBP, DDC, COBL, GRB10, VWC2, FIGNL1) 0.312090027633775 14 0.0558080009231021 0.76626358645148 859 0.295511201542771 4 3 1 -6.99157430652306 LTS-039 chr7 53103297 54617806 1514510 * c(VSTM2A, POM121L12, HPVC1, LINC01446) 0.260841256400434 2 0.107480230740355 0.49976417119293 141 0.255640815293194 2 2 0 -7.26896137876023 LTS-039 chr7 54617807 55538464 920658 * c(EGFR-AS1, EGFR, VSTM2A, SEC61G, VSTM2A-OT1, LANCL2, VOPP1) 0.265036896423634 18 0.139417696572734 0.935806414709395 595 0.407476052584116 4 3 1 -6.77324328425075 LTS-039 chr7 55538465 55540707 2243 * VOPP1 0.386953212466024 2 0.0905096679918781 0.361299072723652 68 0.201543451766501 3 2 1 -6.76646097990499 LTS-039 chr7 55540708 55540775 68 * VOPP1 NA 0 NA 0.626 1 NA NA NA NA NA LTS-039 chr7 55540776 56067861 527086 * c(GBAS, SEPT14, ZNF713, FKBP9P1, MRPS17, VOPP1) 0.244329328483253 14 0.142484874847963 1.00878195073908 416 0.751912619887454 5 4 1 -6.73541895387232 LTS-039 chr7 56067862 56078709 10848 * GBAS NA 0 NA 3.17 1 NA NA NA NA NA LTS-039 chr7 56078710 56146769 68060 * c(SUMF2, PSPH, SNORA15, CCT6A) 0.312 1 NA 1.70863847474799 178 0.616855358848089 9 9 0 -5.76466550201541 LTS-039 chr7 56146770 56147235 466 * c(SUMF2, PSPH) NA 0 NA 0.685 1 NA NA NA NA NA LTS-039 chr7 56147236 57233554 1086319 * c(LOC100130849, DKFZp434L192, SUMF2, NUPR2, CHCHD2, PHKG1, PSPH, GUSBP10, LOC650226, ZNF479) 0.321280325045897 5 0.0674166151627327 0.97868518808143 123 0.490016427167269 4 3 1 -6.82981428843027 LTS-039 chr7 57233555 57533229 299675 * c(MIR3147, ZNF716, GUSBP10) NA 0 NA 0.808967962111946 103 0.564172304114842 4 NA NA -5.76976367386911 LTS-039 chr7 62758725 63023528 264804 * ZNF733P 0.487 1 NA 0.529427643111174 7 0.393534351377724 2 2 0 -5.76441686644023 LTS-039 chr7 63023529 63809738 786210 * c(LINC01005, ZNF679, ZNF727, ZNF736, ZNF735) 0.289451917270371 4 0.0804072965179985 0.698475463436988 187 0.344478166388851 4 3 1 -6.96737781402993 LTS-039 chr7 63809739 63809754 16 * ZNF736 NA 0 NA 0.952 1 NA NA NA NA NA LTS-039 chr7 63809755 66474677 2664923 * c(LOC100128885, ZNF273, VKORC1L1, KCTD7, ZNF92, ERV3-1, CRCP, RABGEF1, LINC00174, GUSB, ZNF680, ASL, LOC441242, GS1-124K5.11, SBDS, ZNF117, ZNF107, TMEM248, TYW1, LOC641746, CCT6P3, CCT6P1, INTS4P2, YWHAEP1, SNORA22, ZNF736, GTF2IRD1P1, ZNF138, TPST1) 0.298914731966206 20 0.0886349550863422 1.01655971430377 1301 1.10643338476647 4 3 1 -6.75551020895595 LTS-039 chr7 66474678 66479348 4671 * TYW1 NA 0 NA 0.558 1 NA NA NA NA NA LTS-039 chr7 66479349 66786524 307176 * c(MIR4650-2, PMS2P4, TYW1, STAG3L4) 0.340162449823448 5 0.0784805708439993 0.694537184449708 148 0.410531808156646 3 2 1 -6.82565695256054 LTS-039 chr7 69063868 70800709 1736842 * c(MIR3914-1, MIR3914-2, AUTS2, WBSCR17) 0.314 1 NA 1.17970780114052 246 0.687073982074857 6 6 0 -5.77234607510358 LTS-039 chr7 70800710 70853169 52460 * WBSCR17 NA 0 NA 0.455 1 NA NA NA NA NA LTS-039 chr7 70853170 72286164 1432995 * c(MIR4650-1, TYW1B, WBSCR17, CALN1) 0.368669567799323 3 0.0959704815728947 0.755123878058819 358 0.325282122514082 3 2 1 -6.76239586650625 LTS-039 chr7 72286165 72296702 10538 * TYW1B NA 0 NA 1.51 1 NA NA NA NA NA LTS-039 chr7 72296703 72413792 117090 * c(SBDSP1, TYW1B, SPDYE7P, POM121) NA 0 NA 1.3486509437511 61 0.559706395514941 7 NA NA -5.76523765119604 LTS-039 chr7 72413793 72413873 81 * POM121 NA 0 NA 0.449 1 NA NA NA NA NA LTS-039 chr7 72413874 72718842 304969 * c(NSUN5P2, GTF2IRD2P1, STAG3L3, LOC541473, NSUN5, NCF1B, FKBP6, POM121) 0.253 1 NA 0.739866396024977 249 0.745306349500337 3 3 0 -5.76492254112023 LTS-039 chr7 72718843 73150599 431757 * c(MIR4284, WBSCR22, TRIM50, VPS37D, ABHD11-AS1, TBL2, MLXIPL, NSUN5, STX1A, FZD9, ABHD11, DNAJC30, FKBP6, BAZ1B, BCL7B) 0.338483831876657 11 0.0625831810109917 1.16138939896782 754 0.58236692297415 6 4 2 -6.77831176342981 LTS-039 chr7 73150600 73150810 211 * ABHD11 NA 0 NA 2.698 1 NA NA NA NA NA LTS-039 chr7 73150811 73256557 105747 * c(CLDN4, CLDN3, WBSCR27, ABHD11) 0.294732019640341 13 0.0206012197796698 2.41500088164696 187 0.960434790874571 11 8 3 -6.75782248564478 LTS-039 chr7 73256558 73275448 18891 * WBSCR27 NA 0 NA 0.8 1 NA NA NA NA NA LTS-039 chr7 73275449 74103507 828059 * c(WBSCR28, ELN, GTF2I, LIMK1, RFC2, MIR590, EIF4H, CLIP2, LAT2, GTF2IRD1) 0.298649963852442 6 0.0612875735093719 0.916402933482834 835 0.405491926865095 4 3 1 -6.7354711507317 LTS-039 chr7 74103508 74105345 1838 * GTF2I NA 0 NA 2.689 1 NA NA NA NA NA LTS-039 chr7 74105346 74210670 105325 * c(GTF2I, NCF1, GTF2IRD2) 0.353 1 NA 1.45333298473011 66 0.62087170091547 7 7 0 -5.76444228861715 LTS-039 chr7 74210671 74210881 211 * GTF2IRD2 NA 0 NA 0.829 1 NA NA NA NA NA LTS-039 chr7 74210882 75048064 837183 * c(POM121C, NSUN5P1, GTF2IP1, TRIM73, NA, GTF2IRD2B, STAG3L2, PMS2P5, STAG3L1, NCF1C, GATSL2, RCC1L, GTF2IRD2) 0.258109614079643 6 0.133933814500546 0.653743124148535 251 0.395640962957226 4 3 1 -7.07897354613867 LTS-039 chr7 75048065 75048587 523 * POM121C NA 0 NA 1.488 1 NA NA NA NA NA LTS-039 chr7 75048588 75931902 883315 * c(POM121C, MIR4651, CCL26, SRRM3, HIP1, HSPB1, MDH2, SPDYE5, STYXL1, PMS2P3, POR, RHBDD2, CCL24, SNORA14A, TMEM120A) 0.3003894864209 12 0.0432290411644765 1.08640423502269 812 0.573368890249816 4 3 1 -6.79781636422717 LTS-039 chr7 75931903 76029882 97980 * c(SSC4D, HSPB1, YWHAG, ZP3) NA 0 NA 1.65663844705574 181 0.682659704307052 8 NA NA -5.76449758810783 LTS-039 chr7 76029883 76030267 385 * c(SSC4D, ZP3) NA 0 NA 0.702 1 NA NA NA NA NA LTS-039 chr7 76030268 76247589 217322 * c(LOC100133091, DTX2, SSC4D, POMZP3, FDPSP2, ZP3, UPK3B) 0.331944291245195 4 0.217538310802182 0.838978419564619 182 0.414990629609966 4 3 1 -6.75079473858574 LTS-039 chr7 76247590 76955956 708367 * c(PMS2P9, LOC100133091, FGL2, POMZP3, DTX2P1-UPK3BP1-PMS2P11, GSAP, CCDC146) 0.300038072048954 13 0.101538485819733 1.1757660324304 376 0.685466330716615 7 5 2 -6.77520361233928 LTS-039 chr7 76955957 76957810 1854 * GSAP NA 0 NA 1.946 1 NA NA NA NA NA LTS-039 chr7 76957811 77240372 282562 * c(GSAP, PTPN12) 0.225833808273273 9 0.104684579146649 1.63462018953 162 0.750102157421584 10 8 2 -6.7437643129125 LTS-039 chr7 77240373 77247765 7393 * PTPN12 NA 0 NA 0.878 1 NA NA NA NA NA LTS-039 chr7 77247766 77708459 460694 * c(APTR, RSBN1L, PHTF2, PTPN12, TMEM60, MAGI2) 0.29744887557879 7 0.0309823298333867 1.01929549050869 404 0.440215993064862 4 3 1 -6.75843278102592 LTS-039 chr7 77708460 77754994 46535 * MAGI2 NA 0 NA 0.559 1 NA NA NA NA NA LTS-039 chr7 77754995 87461589 9706595 * c(MIR548M, MAGI2-AS3, MIR548AU, MAGI2-AS2, SEMA3A, SEMA3C, TP53TG1, RUNDC3B, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, RPL13AP17, ABCB1, ABCB4, CROT, CACNA2D1, TMEM243, CD36, SEMA3E, MAGI2, DMTF1) 0.306684260577352 43 0.117722701937626 0.779833211545349 2989 0.418787487512918 3 2 1 -7.17663122218889 LTS-039 chr7 87461590 87462866 1277 * RUNDC3B NA 0 NA 1.22 1 NA NA NA NA NA LTS-039 chr7 87462867 87536735 73869 * c(DBF4, SLC25A40) NA 0 NA 1.19558667721849 183 0.707654177714577 6 NA NA -5.76460254771691 LTS-039 chr7 87536736 87536855 120 * DBF4 NA 0 NA 0.697 1 NA NA NA NA NA LTS-039 chr7 87536856 89859386 2322531 * c(DBF4, C7orf62, ZNF804B, STEAP2, STEAP1, DPY19L2P4, ADAM22, SRI, STEAP4) 0.315699308827984 8 0.127270171008652 0.782142946732984 911 0.357083110480933 4 3 1 -6.9274214534499 LTS-039 chr7 89859387 89861635 2249 * STEAP2 NA 0 NA 1.225 1 NA NA NA NA NA LTS-039 chr7 89861636 89929379 67744 * c(STEAP2, CFAP69) 0.300081409556273 6 0.0623912387011723 1.3723771143546 251 2.02896568865446 4 3 1 -6.7358437839424 LTS-039 chr7 89929380 89933245 3866 * CFAP69 NA 0 NA 0.886 1 NA NA NA NA NA LTS-039 chr7 89933246 90020208 86963 * c(CFAP69, GTPBP10, CLDN12) 0.326478712914604 11 0.107203375116475 1.03986364667583 199 0.53853724555928 7 5 2 -6.76401955755252 LTS-039 chr7 90020209 90043304 23096 * c(LOC101409256, GTPBP10, CLDN12) 0.331 1 NA 0.773636357379539 41 0.426112488011117 3 3 0 -5.76494953023115 LTS-039 chr7 90043305 90747558 704254 * c(CDK14, CLDN12) 0.325609648737062 2 0.0678822509939086 0.841943975402527 119 0.287730403456693 4 3 1 -6.85055241950984 LTS-039 chr7 90747559 90893767 146209 * CDK14 NA 0 NA 4.205 1 NA NA NA NA NA LTS-039 chr7 90893768 91500446 606679 * c(MTERF1, FZD1) 0 1 NA 1.92707208457831 87 0.849435556886686 10 10 0 -5.7647086191984 LTS-039 chr7 91500447 92087696 587250 * c(AKAP9, CYP51A1, LRRD1, ANKIB1, GATAD1, MTERF1, KRIT1) 0.104649614769084 6 0.170239537123431 1.13344043977304 962 0.588351223651323 5 5 0 -6.74947136198913 LTS-039 chr7 92087697 92132493 44797 * c(PEX1, GATAD1) 0.409 1 NA 1.07111698552732 87 0.344608466895055 5 5 0 -5.7644103602196 LTS-039 chr7 92132494 92463045 330552 * c(CDK6, FAM133B, PEX1, RBM48, NA) 0.452285126965677 12 0.0355817454049209 1.26883675514839 495 0.47145317026352 6 3 3 -6.94633446998633 LTS-039 chr7 92463046 92728858 265813 * c(CDK6, SAMD9) NA 0 NA 0.673 1 NA NA NA NA NA LTS-039 chr7 92728859 92764942 36084 * c(SAMD9L, SAMD9) 0.443436523014558 8 0.054735728733616 0.680767219701488 268 0.24885992794641 2 1 1 -6.78694168540541 LTS-039 chr7 92764943 92764982 40 * SAMD9L 0.483 1 NA 1.644 1 NA NA NA NA NA LTS-039 chr7 92764983 94286032 1521050 * c(MIR4652, BET1, COL1A2, SAMD9L, PEG10, HEPACAM2, GNG11, GNGT1, VPS50, MIR489, CASD1, MIR653, TFPI2, CALCR, SGCE) 0.425299283902725 6 0.0699220995108127 0.969615697015436 1055 0.455786056362355 4 2 2 -6.76725490494792 LTS-039 chr7 94286033 94292620 6588 * PEG10 NA 0 NA 0.493 1 NA NA NA NA NA LTS-039 chr7 94292621 94294928 2308 * PEG10 NA 0 NA 0.525257660056333 51 0.247029792598732 2 NA NA -5.76441262078983 LTS-039 chr7 94294929 94295028 100 * PEG10 NA 0 NA 0.89 1 NA NA NA NA NA LTS-039 chr7 94295029 95727520 1432492 * c(DYNC1I1, PEG10, PDK4, ASB4, PON1, PON2, PON3, PPP1R9A) 0.402593401166924 18 0.0402878937037538 1.11782411658679 840 0.399848831967591 5 3 2 -6.74975079245804 LTS-039 chr7 95727521 96746812 1019292 * c(LOC100506136, SLC25A13, DLX5, DLX6, DYNC1I1, DLX6-AS1, C7orf76, SDHAF3, MIR591, SHFM1) 0.404352238142513 7 0.0694567354202463 1.68407634241979 335 1.05230094685027 10 6 4 -6.74786525162962 LTS-039 chr7 96746813 97875293 1128481 * c(BHLHA15, LMTK2, TECPR1, MGC72080, ASNS, OCM2, SDHAF3, TAC1) 0.410150005729288 6 0.0213299476480058 1.04368140509464 574 0.558461764695381 5 3 2 -6.74710005599691 LTS-039 chr7 97875294 99173528 1298235 * c(MIR3609, ATP5J2-PTCD1, ARPC1B, ARPC1A, CPSF4, PDAP1, FAM200A, TMEM130, ZKSCAN5, BRI3, TECPR1, PTCD1, ZNF789, KPNA7, NPTX2, BAIAP2L1, SMURF1, ZNF655, TRRAP, ZNF394, MYH16, BUD31, ATP5J2) 0.410877716875693 5 0.0676668308700799 1.32104017904148 1813 0.529097761620618 7 4 3 -6.76269428263194 LTS-039 chr7 99173529 99581030 407502 * c(GS1-259H13.2, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A5, ZSCAN25, GJC3, AZGP1, AZGP1P1, CYP3A43, ZNF655, OR2AE1, TRIM4) 0.443422549149423 2 0.0537401153701776 1.01744454612354 668 0.405481993172798 4 2 2 -6.79225862886388 LTS-039 chr7 99581031 99636648 55618 * c(AZGP1P1, ZKSCAN1) 0.396249278799973 3 0.0228546129552293 2.33369451011223 148 0.992850514130257 20 12 8 -6.74650782004255 LTS-039 chr7 99636649 99654488 17840 * ZSCAN21 NA 0 NA 1.198 1 NA NA NA NA NA LTS-039 chr7 99654489 99775033 120545 * c(MIR4658, COPS6, GPC2, CNPY4, MBLAC1, LAMTOR4, MIR106B, MIR25, MIR93, MCM7, C7orf43, TAF6, ZNF3, ZSCAN21, GAL3ST4, AP4M1) 0.411292298277492 4 0.0808558387914359 1.65477643505522 737 0.62515808232643 7 4 3 -6.74406246170549 LTS-039 chr7 99775034 99778080 3047 * STAG3 NA 0 NA 0.74 1 NA NA NA NA NA LTS-039 chr7 99778081 100018345 240265 * c(STAG3, PILRB, PILRA, GATS, SPDYE3, PMS2P1, ZCWPW1, PVRIG) 0.407405569246443 2 0.129400540957138 1.13560893548686 427 0.464629007382465 5 3 2 -6.73523839003579 LTS-039 chr7 100018346 100027228 8883 * c(ZCWPW1, MEPCE) NA 0 NA 3.472 1 NA NA NA NA NA LTS-039 chr7 100027229 100034237 7009 * c(PPP1R35, MEPCE) 0.426 1 NA 2.23549258004086 104 0.762857010962577 11 11 0 -5.76441985356122 LTS-039 chr7 100034238 100054173 19936 * character(0) NA 0 NA 1.22 1 NA NA NA NA NA LTS-039 chr7 100054174 100176335 122162 * c(SAP25, NYAP1, AGFG2, C7orf61, LRCH4, TSC22D4) 0.443 1 NA 1.18836837740444 429 0.454339512838569 6 6 0 -5.76539549613845 LTS-039 chr7 100176336 100218219 41884 * c(PCOLCE-AS1, FBXO24, LRCH4, PCOLCE, MOSPD3, TFR2) 0.5 1 NA 1.86880955176719 217 0.629444293806012 9 9 0 -5.76451583552098 LTS-039 chr7 100218220 100321092 102873 * c(POP7, EPO, GNB2, ACTL6B, GIGYF1, TFR2) 0.482 1 NA 1.26382037453484 419 0.467996497322339 6 6 0 -5.76443233052852 LTS-039 chr7 100321093 100344360 23268 * c(EPO, ZAN) NA 0 NA 0.354755676854388 39 0.433679896192657 1 NA NA -5.7644218937268 LTS-039 chr7 100344361 100345155 795 * ZAN NA 0 NA 1.766 1 NA NA NA NA NA LTS-039 chr7 100345156 100391830 46675 * ZAN 0.372 1 NA 1.08650814601028 212 5.44770460816996 5 5 0 -5.76441030078404 LTS-039 chr7 100391831 100392816 986 * ZAN NA 0 NA 2.68 1 NA NA NA NA NA LTS-039 chr7 100392817 100490871 98055 * c(EPHB4, UFSP1, ACHE, SRRT, SLC12A9, TRIP6, ZAN) 0.461 1 NA 1.86297746399558 453 1.08012196229744 9 9 0 -5.7644817968288 LTS-039 chr7 100490872 100635668 144797 * c(MUC12, ACHE) 0.375082316298919 138 0.0830591374960698 1.05340832399624 394 0.460274014822011 6 4 2 -6.78059102308343 LTS-039 chr7 100635669 100635679 11 * MUC12 0.252 1 NA 0.499 1 NA NA NA NA NA LTS-039 chr7 100635680 100701655 65976 * c(MUC12, MUC17) 0.429622608212031 7 0.0599650691970711 0.666891684849897 327 0.23451410207884 2 1 1 -6.77049393908547 LTS-039 chr7 100701656 100701661 6 * MUC17 NA 0 NA 1.033 1 NA NA NA NA NA LTS-039 chr7 100701662 102180565 1478904 * c(RASA4B, LOC100289561, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, LRWD1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, POLR2J, ALKBH4, POLR2J3, IFT22, SPDYE6, VGF, PRKRIP1, ORAI2, TRIM56, PLOD3, MYL10) 0.409594690126054 48 0.0958523146481307 1.22307884970509 1747 0.607201738093072 6 3 3 -6.76333767249864 LTS-039 chr7 102180566 102220504 39939 * c(RASA4B, SPDYE2B, RASA4, POLR2J3) NA 0 NA 2.411 1 NA NA NA NA NA LTS-039 chr7 102220505 103019857 799353 * c(RPL19P12, RASA4B, SPDYE2B, RASA4, LRRC17, FAM185A, FBXL13, NAPEPLD, POLR2J2, DNAJC2, DPY19L2P2, SLC26A5, PSMC2, ARMC10, PMPCB) 0.320678382052883 4 0.10371435130524 1.4909067528736 817 0.734350274223002 7 5 2 -6.73967538296665 LTS-039 chr7 103019858 103020918 1061 * SLC26A5 NA 0 NA 0.952 1 NA NA NA NA NA LTS-039 chr7 103020919 103338601 317683 * c(SLC26A5, RELN) 0.461368700040918 5 0.0292403830344269 0.938545383353571 418 0.251686390746958 4 2 2 -7.33768216333443 LTS-039 chr7 103338602 103341303 2702 * RELN NA 0 NA 1.395 1 NA NA NA NA NA LTS-039 chr7 103341304 105890639 2549336 * c(EFCAB10, KMT2E-AS1, LINC01004, NAMPT, ATXN7L1, CDHR3, LHFPL3, ORC5, PUS7, KMT2E, RELN, RINT1, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2) 0.381314528371951 11 0.13260275603882 1.26446549935374 1221 0.676331922737959 6 4 2 -6.75707054970956 LTS-039 chr7 105890640 105895032 4393 * NAMPT NA 0 NA 0.568654239289233 39 0.435850271124622 2 NA NA -5.76447601489172 LTS-039 chr7 105895033 105901835 6803 * NAMPT NA 0 NA 1.774 1 NA NA NA NA NA LTS-039 chr7 105901836 106300406 398571 * c(NAMPT, CCDC71L) 0.425264695802926 2 0.00636396103067893 1.75768820889707 134 0.747048620166906 9 5 4 -6.73498835095857 LTS-039 chr7 106300407 108112246 1811840 * c(COG5, DUS4L, CCDC71L, DLD, SLC26A3, LAMB4, HBP1, GPR22, SLC26A4-AS1, LAMB1, NRCAM, PNPLA8, SLC26A4, PIK3CG, PRKAR2B, BCAP29, CBLL1) 0.390763629459986 30 0.141374651030597 1.20343140156054 1860 0.634577022982256 6 4 2 -6.77576781056388 LTS-039 chr7 108112247 111512675 3400429 * c(C7orf66, THAP5, DNAJB9, EIF3IP1, PNPLA8, LRRN3, IMMP2L, DOCK4) 0.395106254622828 12 0.127841047137973 0.906737332117206 613 0.415487186305717 4 2 2 -6.78246499937241 LTS-039 chr7 111512676 111517079 4404 * DOCK4 NA 0 NA 1.202 1 NA NA NA NA NA LTS-039 chr7 111517080 112127133 610054 * c(ZNF277, LSMEM1, IFRD1, DOCK4) 0.427004405393938 5 0.0315784736806578 1.44784365776638 322 0.581126498822215 8 4 4 -6.75391785579463 LTS-039 chr7 112127134 112129870 2737 * LSMEM1 NA 0 NA 0.689 1 NA NA NA NA NA LTS-039 chr7 112129871 112758642 628772 * c(BMT2, LSMEM1, LINC00998, GPR85, TMEM168) 0.421596201550764 7 0.0349952377712549 1.11202274208264 350 0.667495649293405 6 3 3 -6.78529873418655 LTS-039 chr7 112758643 113091142 332500 * character(0) NA 0 NA 0.732 1 NA NA NA NA NA LTS-039 chr7 113091143 115582116 2490974 * c(MIR3666, TFEC, MDFIC, PPP1R3A, FOXP2) 0.458423305605492 9 0.0392569880544994 0.778021119277665 604 0.856649935118774 4 2 2 -7.05601988364494 LTS-039 chr7 115582117 115590872 8756 * TFEC NA 0 NA 1.538 1 NA NA NA NA NA LTS-039 chr7 115590873 117358013 1767141 * c(CFTR, ASZ1, TFEC, TES, ST7-OT4, MET, WNT2, ST7, CAPZA2, CTTNBP2, CAV1, CAV2, ST7-AS1, ST7-AS2, ST7-OT3) 0.387239308822279 22 0.136978851023454 1.14803473244821 1167 0.577568266549472 5 3 2 -6.76038997847975 LTS-039 chr7 117358014 117358112 99 * CTTNBP2 NA 0 NA 0.892 1 NA NA NA NA NA LTS-039 chr7 117358113 120901930 3543818 * c(TSPAN12, KCND2, LSM8, ING3, ANKRD7, CPED1, CTTNBP2) 0.374063097842827 10 0.141349409463059 0.878859734548215 778 0.467503726483106 4 2 2 -6.82988023490004 LTS-039 chr7 120901931 120936006 34076 * CPED1 0.49 1 NA 0.683149819755207 28 0.226211877433665 3 3 0 -5.76505938303736 LTS-039 chr7 120936007 120988965 52959 * c(FAM3C, WNT16, CPED1) 0.45 1 NA 0.986386481000489 119 0.439995990905069 5 5 0 -5.76555172840923 LTS-039 chr7 120988966 120989025 60 * FAM3C NA 0 NA 0.549 1 NA NA NA NA NA LTS-039 chr7 120989026 120990370 1345 * FAM3C 0.416 1 NA 0.325976830387262 39 0.194842737374767 1 1 0 -5.76452029780069 LTS-039 chr7 120990371 123152450 2162080 * c(AASS, FAM3C, FEZF1-AS1, IQUB, RNF133, RNF148, FEZF1, TAS2R16, PTPRZ1, SLC13A1, CADPS2) 0.454132699406559 20 0.0332304156807553 0.735534234737764 999 0.359808715163906 4 2 2 -7.36784154277395 LTS-039 chr7 123152451 123177030 24580 * IQUB NA 0 NA 1.597 1 NA NA NA NA NA LTS-039 chr7 123177031 123198295 21265 * NDUFA5 0.466713316804267 3 0.0305122926047847 1.32651038977871 158 0.687004732897425 6 3 3 -7.4706482311354 LTS-039 chr7 123198296 123254494 56199 * ASB15 NA 0 NA 0.309 1 NA NA NA NA NA LTS-039 chr7 123254495 123304285 49791 * c(ASB15, LMOD2) 0.46730076060529 4 0.0137204227340122 0.726736849053931 129 0.266410819384419 4 2 2 -9.40641578010382 LTS-039 chr7 123304286 123508270 203985 * c(HYAL4, HYALP1, WASL) 0.458227853282495 3 0.0437530951286115 1.28587999453492 133 0.814175643220316 6 3 3 -6.96181673842294 LTS-039 chr7 123508271 126883458 3375188 * c(C7orf77, HYAL4, POT1, GPR37, GRM8, SPAM1, MIR592, TMEM229A) 0.45024011084201 10 0.0370796440112361 0.700786099310097 484 0.335537738039529 4 2 2 -7.79135056455415 LTS-039 chr7 126883459 128043741 1160283 * c(MGC27345, ZNF800, SND1, SND1-IT1, GRM8, FSCN3, IMPDH1, ARF5, LEP, PRRT4, MIR129-1, PAX4, RBM28, LRRC4, MIR593, GCC1) 0.46173833082126 7 0.0198230265336144 1.02815328401159 874 0.471064256466939 4 2 2 -7.99328276762325 LTS-039 chr7 128043742 128045767 2026 * IMPDH1 NA 0 NA 1.404 1 NA NA NA NA NA LTS-039 chr7 128045768 128128197 82430 * c(HILPDA, IMPDH1, METTL2B) 0.334054241427694 2 0.164048773235279 1.55455470819203 93 0.849161593499558 9 6 3 -6.7389636399622 LTS-039 chr7 128128198 129414833 1286636 * c(LOC100130705, SMKR1, RNA5SP244, FLNC, AHCYL2, TNPO3, TPI1P2, TSPAN33, FAM71F2, IRF5, KCP, LINC01000, MIR182, MIR183, MIR96, LOC407835, NRF1, METTL2B, STRIP2, OPN1SW, CCDC136, SMO, CALU, FAM71F1, ATP6V1F) 0.457906102194934 38 0.0374155854062776 0.903367457608707 1913 0.384454150811946 4 2 2 -7.03557854765692 LTS-039 chr7 129414834 129592848 178015 * c(MIR183, UBE2H) 0.44592873267534 6 0.0463871390222189 2.40387597836376 145 1.12531095745036 12 6 6 -6.79712456454279 LTS-039 chr7 129592849 129658085 65237 * character(0) NA 0 NA 0.873 1 NA NA NA NA NA LTS-039 chr7 129658086 129986502 328417 * c(CPA2, SSMEM1, KLHDC10, CPA4, ZC3HC1, TMEM209, CPA5) 0.435569193470517 17 0.0646702609168915 1.23088426712734 510 0.598478732174898 6 3 3 -6.73660574392813 LTS-039 chr7 129986503 129987537 1035 * CPA5 NA 0 NA 2.615 1 NA NA NA NA NA LTS-039 chr7 129987538 130135996 148459 * c(CPA1, MESTIT1, MEST, MIR335, CPA5, CEP41) NA 0 NA 1.89345050025583 293 0.815749378776209 10 NA NA -5.76464541424626 LTS-039 chr7 130135997 130136874 878 * c(MEST, MIR335) NA 0 NA 1.007 1 NA NA NA NA NA LTS-039 chr7 130136875 131815343 1678469 * c(TSGA13, KLF14, COPG2, LINC-PINT, MIR29A, MIR29B1, MEST, MKLN1, PODXL, NA, PLXNA4) 0.458270391893858 18 0.0289156989723372 1.12402958939295 808 0.790723665924989 6 3 3 -7.25323093814488 LTS-039 chr7 131815344 131825604 10261 * PLXNA4 0 1 NA 1.20748718927096 11 0.923932878317664 6 6 0 -5.76441985970687 LTS-039 chr7 131825605 133949256 2123652 * c(LRGUK, FLJ40288, CHCHD3, EXOC4, PLXNA4) 0.39554309835858 10 0.0608206836163123 0.965962312993251 602 0.376370459912039 5 3 2 -6.85084594067444 LTS-039 chr7 133949257 134260733 311477 * c(AKR1B1, AKR1B15, AKR1B10, SLC35B4) 0.324847869702019 7 0.176116168371631 1.49138046427756 304 0.786001053451867 7 5 2 -6.73723504454762 LTS-039 chr7 134260734 134261172 439 * AKR1B15 NA 0 NA 1.235 1 NA NA NA NA NA LTS-039 chr7 134261173 134873326 612154 * c(WDR91, AGBL3, AKR1B15, TMEM140, BPGM, C7orf49, CALD1) 0.413046534495988 8 0.0503636773875776 1.12184708669347 473 0.469062147811284 5 3 2 -6.74489062681291 LTS-039 chr7 134873327 134874106 780 * WDR91 NA 0 NA 3.176 1 NA NA NA NA NA LTS-039 chr7 134874107 134896318 22212 * WDR91 NA 0 NA 2.36784693700525 65 0.66293022605353 12 NA NA -5.76441588753133 LTS-039 chr7 134896319 134916696 20378 * character(0) NA 0 NA 0.673 1 NA NA NA NA NA LTS-039 chr7 134916697 135614405 697709 * c(NUP205, SLC13A4, STRA8, FAM180A, CNOT4, C7orf73, LUZP6) 0.445588678528116 8 0.032769487113995 1.1941651672887 676 0.654641003772186 6 3 3 -6.85671743673692 LTS-039 chr7 135614406 137597893 1983488 * c(CHRM2, LOC349160, MIR490, PTN, CREB3L2, LUZP6, DGKI) 0.336598646696598 9 0.190564803792422 0.860368208139316 608 0.36333292076715 4 3 1 -6.76963025431906 LTS-039 chr7 137597894 137600531 2638 * CREB3L2 NA 0 NA 1.198 1 NA NA NA NA NA LTS-039 chr7 137600532 138983670 1383139 * c(LOC100130880, MIR4468, SVOPL, TMEM213, UBN2, ATP6V0A4, ZC3HAV1, KIAA1549, CREB3L2, AKR1D1, TTC26, TRIM24, ZC3HAV1L) 0.367180273575817 28 0.154538860029635 1.13832984013298 1483 0.571116817604713 6 4 2 -6.7600399608491 LTS-039 chr7 138983671 138983676 6 * UBN2 NA 0 NA 2.216 1 NA NA NA NA NA LTS-039 chr7 138983677 139167821 184145 * c(LOC100129148, C7orf55-LUC7L2, FMC1, UBN2, KLRG2, LUC7L2) NA 0 NA 1.92771202199545 186 1.36741698965524 10 NA NA -5.76444414896403 LTS-039 chr7 139167822 141445499 2277678 * c(JHDM1D-AS1, NDUFB2-AS1, TMEM178B, CLEC2L, MKRN1, DENND2A, WEE2-AS1, HIPK2, KLRG2, RAB19, NDUFB2, WEE2, MRPS33, AGK, KIAA1147, PARP12, BRAF, SSBP1, TBXAS1, KDM7A, SLC37A3, ADCK2) 0.400401622045549 29 0.0896893928629145 1.25046432257348 2018 0.56773417895834 6 3 3 -6.80072054292175 LTS-039 chr7 141445500 141450031 4532 * SSBP1 NA 0 NA 0.677 1 NA NA NA NA NA LTS-039 chr7 141450032 141758172 308141 * c(OR9A4, PRSS37, CLEC5A, TAS2R3, TAS2R4, TAS2R5, TAS2R38, SSBP1, MGAM) 0.372181081803405 21 0.0998946826365028 0.833014245592868 440 0.397593504079778 3 2 1 -6.76215990184205 LTS-039 chr7 141758173 141759281 1109 * MGAM NA 0 NA 0.437 1 NA NA NA NA NA LTS-039 chr7 141759282 141793453 34172 * MGAM NA 0 NA 0.51497553155092 121 0.189717298020091 2 NA NA -5.76493095031602 LTS-039 chr7 141793454 141794246 793 * MGAM NA 0 NA 0.709 1 NA NA NA NA NA LTS-039 chr7 141794247 142045848 251602 * c(MOXD2P, PRSS58, NA, MGAM, MGAM2) 0.358492295408653 45 0.0838301734448759 0.920033939610492 498 0.5617821465996 3 2 1 -6.77816108816954 LTS-039 chr7 142045849 142045877 29 * character(0) 0.31 1 NA 1.83 1 NA NA NA NA NA LTS-039 chr7 142045878 142494853 448976 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.34680313113371 55 0.0806648008800003 1.54840209031867 403 2.97255928713649 9 6 3 -6.73389944611668 LTS-039 chr7 142494854 142920258 425405 * c(OR9A2, C7orf34, EPHB6, TAS2R39, TAS2R40, OR6V1, KEL, PIP, TRPV6, TRPV5, OR6W1P) 0.397168850971589 26 0.0575186391194528 0.737359426075608 663 0.269029056875186 3 2 1 -6.85809832352812 LTS-039 chr7 142920259 142960202 39944 * character(0) NA 0 NA 1.483 1 NA NA NA NA NA LTS-039 chr7 142960203 143003971 43769 * c(TMEM139, GSTK1, CASP2) 0.419442588876462 3 0.0167032930884901 1.58566691271824 185 0.830436482854892 7 4 3 -6.73452508664059 LTS-039 chr7 143003972 143295556 291585 * c(CLCN1, EPHA1, TAS2R41, EPHA1-AS1, TAS2R60, CTAGE15, ZYX, CASP2, FAM131B) 0.409755447685874 12 0.0531158681991122 0.897219197979599 534 0.380619004335123 5 3 2 -6.77265102809303 LTS-039 chr7 143295557 143306949 11393 * character(0) NA 0 NA 0.286814229725231 50 0.170489141434107 1 NA NA -5.77380244035842 LTS-039 chr7 143306950 143884193 577244 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, ARHGEF35, TCAF1) 0.372395420107017 5 0.202807297699072 0.589968358576527 337 0.498687990355293 3 2 1 -6.78134153383404 LTS-039 chr7 143884194 143928926 44733 * ARHGEF35 NA 0 NA 0.042 1 NA NA NA NA NA LTS-039 chr7 143928927 143972006 43080 * c(OR2A7, ARHGEF34P) NA 0 NA 0.13376041651464 46 0.0832770244541216 0 NA NA -5.96987871712562 LTS-039 chr7 143972007 144015628 43622 * ARHGEF34P NA 0 NA 0.436994529771371 52 0.290747279251512 2 NA NA -5.77609246286755 LTS-039 chr7 144015629 144074334 58706 * ARHGEF5 NA 0 NA 0.197007954323451 62 0.139665348500103 0 NA NA -5.80387317563754 LTS-039 chr7 144074335 148288116 4213782 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, CNTNAP2, TPK1, ARHGEF5) 0.292433220093348 11 0.209620045883889 0.932465562413245 526 0.514640742921556 4 3 1 -6.75238511202692 LTS-039 chr7 148288117 148288122 6 * C7orf33 NA 0 NA 1.489 1 NA NA NA NA NA LTS-039 chr7 148288123 148767977 479855 * c(ZNF786, C7orf33, EZH2, CUL1, PDIA4) 0.425642414758456 3 0.0270985854489369 1.44305326854413 377 0.762707249481287 9 5 4 -6.75639940513586 LTS-039 chr7 148767978 149485638 717661 * c(ZNF783, ZNF786, ZNF425, LOC155060, ZNF746, ZNF467, SSPO, ZNF777, ZNF398, ZNF212, ZNF767P, ZNF282, KRBA1) 0.408391440314175 28 0.0536949422701694 1.16453332154495 1198 0.451017635560804 5 3 2 -6.74780863297903 LTS-039 chr7 149485639 149525826 40188 * SSPO 0.399367496054237 24 0.097746010704763 0.823956486895188 407 0.373999327335022 5 3 2 -6.74868248983465 LTS-039 chr7 149525827 149525920 94 * SSPO NA 0 NA 0.997 1 NA NA NA NA NA LTS-039 chr7 149525921 149941605 415685 * c(ATP6V0E2, SSPO, ATP6V0E2-AS1, ZNF862) 0.363607294728132 7 0.0665518058142892 1.12541652561415 283 0.423867373194603 6 4 2 -6.75920918811195 LTS-039 chr7 149941606 149946176 4571 * ACTR3C NA 0 NA 0.536680622105018 105 0.327910039704786 2 NA NA -5.76441324561377 LTS-039 chr7 149946177 149981784 35608 * ACTR3C NA 0 NA 1.871 1 NA NA NA NA NA LTS-039 chr7 149981785 150093770 111986 * c(RNU6-34P, ZBED6CL, ZNF775, REPIN1, RARRES2, ACTR3C, LRRC61) 0.228 1 NA 1.43593770697281 265 0.674597592436397 7 7 0 -5.7644107038717 LTS-039 chr7 150093771 150558583 464813 * c(GIMAP1-GIMAP5, GIMAP8, GIMAP7, GIMAP1, AOC1, GIMAP2, ZNF775, LINC00996, TMEM176B, GIMAP6, GIMAP4, GIMAP5, TMEM176A, LOC728743) 0.424480090811396 29 0.0486154610611397 0.950229856994889 653 0.376312729177002 4 2 2 -6.7507617217095 LTS-039 chr7 150558584 150775233 216650 * c(CDK5, FASTK, ABCB8, ATG9B, KCNH2, NOS3, SLC4A2, ASIC3) 0.401266741491083 18 0.0512295870394764 1.41684946537238 872 0.585311096091163 5 3 2 -6.77005145575842 LTS-039 chr7 150775234 150775658 425 * FASTK NA 0 NA 2.19 1 NA NA NA NA NA LTS-039 chr7 150775659 150814269 38611 * c(FASTK, AGAP3, TMUB1) 0.371917774582233 2 0.014142135623731 2.36618583888291 81 0.706370684870518 11 7 4 -6.73384808787149 LTS-039 chr7 150814270 150814385 116 * AGAP3 NA 0 NA 1.437 1 NA NA NA NA NA LTS-039 chr7 150814386 150913061 98676 * c(ABCF2, AGAP3, ASB10, GBX1) 0.325154460407707 4 0.23143249555756 1.06415269940693 275 0.649965963582346 4 3 1 -6.74592379062909 LTS-039 chr7 150913062 150913067 6 * ABCF2 NA 0 NA 1.57 1 NA NA NA NA NA LTS-039 chr7 150913068 151574189 661122 * c(WDR86-AS1, MIR3907, PRKAG2-AS1, ABCF2, CRYGN, WDR86, PRKAG2, NUB1, CHPF2, RHEB, SMARCD3, MIR671) 0.41373316873691 25 0.0972588127969217 1.77481857772395 696 0.774267329635203 9 5 4 -6.74204256164672 LTS-039 chr7 151574190 151664225 90036 * c(PRKAG2-AS1, GALNTL5, PRKAG2) NA 0 NA 0.855 1 NA NA NA NA NA LTS-039 chr7 151664226 152552513 888288 * c(LINC01003, GALNTL5, FABP5P3, ACTR3B, KMT2C, GALNT11, XRCC2) 0.337198856127899 8 0.0825244552498574 1.22565862266482 825 0.499844122339401 6 4 2 -6.76146597365458 LTS-039 chr7 153417466 154645660 1228195 * DPP6 0.456815661727072 2 0.00989949493661171 0.617693781628294 249 0.349693400262388 2 1 1 -9.48545739915776 LTS-039 chr7 154645661 154659655 13995 * DPP6 NA 0 NA 0.892 1 NA NA NA NA NA LTS-039 chr7 154659656 154860200 200545 * c(HTR5A-AS1, PAXIP1-AS2, DPP6, PAXIP1-AS1, PAXIP1) 0.382066379499608 16 0.113961396972835 1.27557445415479 288 0.567122003631494 8 5 3 -6.75395672996108 LTS-039 chr7 154860201 154877318 17118 * c(HTR5A-AS1, HTR5A) NA 0 NA 0.74026930903728 82 0.299581765075368 3 NA NA -5.7645930954694 LTS-039 chr7 154877319 155150063 272745 * c(HTR5A, INSIG1) 0.445543625680254 7 0.041244913106259 1.65410837324487 127 0.776955428038092 8 4 4 -6.80997404633288 LTS-039 chr7 155150064 155256098 106035 * EN2 0.433545127443258 15 0.0601128304187416 0.787658628606696 121 0.329739125118038 4 2 2 -6.74337471314127 LTS-039 chr7 155256099 155593852 337754 * c(RBM33, EN2, CNPY1, SHH) 0.398171612441176 6 0.0633940060258066 1.20704289156066 424 0.480008992561279 5 3 2 -6.75714456326765 LTS-039 chr7 155593853 156433311 839459 * c(C7orf13, LOC285889, LINC00244, SHH) 0.147610984075808 2 0.260215295476649 2.08139239683755 203 1.19482990948834 10 9 1 -6.73553884940532 LTS-039 chr7 156433312 156436420 3109 * c(C7orf13, RNF32) NA 0 NA 1.216 1 NA NA NA NA NA LTS-039 chr7 156436421 157177783 741363 * c(DNAJB6, RNF32, MNX1, LMBR1, NOM1, MNX1-AS1, UBE3C) 0.415644188883656 10 0.0540441177804455 1.42276637185204 677 0.695421612904944 7 4 3 -6.73726380369292 LTS-039 chr7 157177784 157178114 331 * DNAJB6 NA 0 NA 0.906 1 NA NA NA NA NA LTS-039 chr7 157178115 158415747 1237633 * c(DNAJB6, LOC100506585, MIR5707, MIR153-2, PTPRN2, MIR595) 0.415503486959453 6 0.0453416659008761 0.705047042219198 381 2.3015826469594 5 3 2 -6.77825374503313 LTS-039 chr7 158415748 158423952 8205 * character(0) NA 0 NA 1.284 1 NA NA NA NA NA LTS-039 chr7 158423953 158937585 513633 * c(LINC00689, NCAPG2, WDR60, ESYT2, VIPR2) 0.423556346372192 20 0.0463613950110264 1.38308869985288 687 0.481069660547225 7 4 3 -6.73792964861572 LTS-039 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 1.24 2 0 0 NA NA -Inf LTS-039 chr8 182757 182934 178 * ZNF596 0.236 1 NA 0.768623185601229 3 0.13308017633492 3 3 0 -5.76444621890829 LTS-039 chr8 182935 4852482 4669548 * c(TDRP, ERICH1, ZNF596, CLN8, FBXO25, LOC286083, ERICH1-AS1, CSMD1, MIR596, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.418337525144182 87 0.0597516646414627 0.4795521270481 1843 0.192743628120441 2 1 1 -7.44956983660617 LTS-039 chr8 6264045 6735616 471572 * c(LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, DEFB1, ANGPT2, XKR5, AGPAT5, MCPH1) 0.369785535997137 6 0.176883765978302 0.844772435191042 458 0.37656648901007 3 2 1 -6.79154777738053 LTS-039 chr8 6735617 6782201 46585 * character(0) NA 0 NA 0.616 1 NA NA NA NA NA LTS-039 chr8 6782202 7272472 490271 * c(FAM66B, ZNF705G, DEFB4B, DEFA1, DEFA4, DEFA5, DEFA6, DEFT1P, USP17L1, DEFA8P, DEFA9P, DEFA10P, USP17L4, DEFA11P, DEFA1B) 0.425966475083492 5 0.0493588897768173 0.47737642458239 53 0.209585820740437 2 1 1 -6.81291973811272 LTS-039 chr8 7272473 7752348 479876 * c(DEFB4B, DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0.364054908763115 3 0.0726291952316698 0.259287337853554 129 0.263355494112179 0 0 0 -7.86357447817937 LTS-039 chr8 7752349 8175294 422946 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 2.102 1 NA NA NA NA NA LTS-039 chr8 8175295 8655023 479729 * c(CLDN23, SGK223, MFHAS1) 0.421499672855036 9 0.0685583692921586 0.88972573882443 219 0.598457990437896 4 2 2 -6.7438071164419 LTS-039 chr8 8655024 8747537 92514 * MFHAS1 0.366 1 NA 0.997141562037441 5 0.522066853956464 5 5 0 -5.76548227842126 LTS-039 chr8 8747538 9414398 666861 * c(MIR4660, LOC157273, PPP1R3B, TNKS, ERI1, MFHAS1) 0.337114666920427 14 0.123250838661525 0.949065030474149 362 2.85035722996958 6 4 2 -6.74926390976279 LTS-039 chr8 9414399 9416316 1918 * TNKS 0.292331779861622 2 0.0113137084989848 1.79181004723399 43 0.745741276884099 11 8 3 -6.7469300023698 LTS-039 chr8 9416317 9435682 19366 * TNKS NA 0 NA 0.654 1 NA NA NA NA NA LTS-039 chr8 9435683 10755355 1319673 * c(MIR1322, LINC00599, PRSS55, C8orf74, XKR6, MIR124-1, MSRA, PINX1, MIR597, SOX7, TNKS, RP1L1) 0.376699678654414 32 0.0632816285830969 0.64951410635977 866 0.295530049163786 3 2 1 -6.81150484527013 LTS-039 chr8 10755356 11105329 349974 * c(XKR6, MIR598) 0.43439066798597 8 0.046667325675619 0.418354270134697 221 0.227306148690295 2 1 1 -6.95864508946592 LTS-039 chr8 11105330 11141892 36563 * character(0) NA 0 NA 0.846 1 NA NA NA NA NA LTS-039 chr8 11141893 11649075 507183 * c(TDH, NEIL2, GATA4, BLK, MTMR9, FAM167A, SLC35G5, LINC00208, FAM167A-AS1) 0.354008310705814 45 0.0944313817466729 0.644441112909722 772 0.391190372549975 3 2 1 -6.77198320206234 LTS-039 chr8 11649076 11659146 10071 * FDFT1 NA 0 NA 1.462 1 NA NA NA NA NA LTS-039 chr8 11659147 11711064 51918 * c(CTSB, FDFT1) 0.327826948983304 17 0.0372319834045313 1.30243614729898 201 0.622757645696648 13 9 4 -6.79118437530767 LTS-039 chr8 11711065 11831350 120286 * CTSB NA 0 NA 0.514 1 NA NA NA NA NA LTS-039 chr8 11831351 13251203 1419853 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, DEFB109P1, DEFB130, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, KIAA1456, DEFB135, DEFB136, DEFB134, LOC649352, FAM86B2, ZNF705D, FAM90A2P, LOC729732, FAM86B1, LONRF1) 0.352425416492568 13 0.123271276834093 0.777589069877985 498 0.440747381534125 3 2 1 -6.78148489053541 LTS-039 chr8 13251204 13259011 7808 * DLC1 NA 0 NA 0.431 1 NA NA NA NA NA LTS-039 chr8 13259012 16885010 3625999 * c(DLC1, SGCZ, C8orf48, FGF20, MICU3, MSR1, MIR383, TUSC3) 0.316734639765142 14 0.123259219390824 0.524837246234901 429 0.31903729025534 2 1 1 -7.20921667662202 LTS-039 chr8 16885011 16885029 19 * MICU3 NA 0 NA 0.82 1 NA NA NA NA NA LTS-039 chr8 16885030 17743020 857991 * c(VPS37A, FGL1, MICU3, CNOT7, ZDHHC2, PDGFRL, MTUS1, SLC7A2, MTMR7) 0.351567608723396 39 0.103596011521867 0.779915801995097 912 0.420205289431935 3 2 1 -6.77901368957906 LTS-039 chr8 17743021 17743256 236 * FGL1 0.43 1 NA 0.535404114726877 5 0.171672071112339 2 2 0 -5.76441049376185 LTS-039 chr8 17743257 17808235 64979 * c(FGL1, PCM1) 0.443919258641147 3 0.0387599449604012 0.812119126549544 52 0.22789181696877 4 2 2 -6.80863272012366 LTS-039 chr8 17808236 17810472 2237 * PCM1 NA 0 NA 0.636 1 NA NA NA NA NA LTS-039 chr8 17810473 20103865 2293393 * c(NAT2, LOC100128993, LZTS1, PSD3, LPL, ASAH1, PCM1, ATP6V1B2, INTS10, CSGALNACT1, SH2D4A, SLC18A1, NAT1) 0.432266931756522 47 0.0804535133327661 0.621137725696261 1357 0.366190148734306 2 1 1 -6.97667752476122 LTS-039 chr8 20103866 21939903 1836038 * c(LZTS1-AS1, NPM2, LZTS1, DMTN, XPO7, GFRA2, LOC286114, FGF17, DOK2) 0.335394641851992 8 0.157832585355496 0.430975808127802 656 0.190509068627908 1 1 0 -8.01633885657087 LTS-039 chr8 21939904 22453246 513343 * c(SORBS3, LGI3, DMTN, SLC39A14, MIR320A, PIWIL2, PPP3CC, HR, PDLIM2, SFTPC, FAM160B2, BMP1, POLR3D, NUDT18, REEP4, PHYHIP) 0.42771786811243 31 0.0882369488354224 0.612451541898879 1488 0.253635493733044 2 1 1 -6.83020322387557 LTS-039 chr8 22453247 22462363 9117 * c(C8orf58, CCAR2, PDLIM2) 0.498384025518406 2 0.00282842712474619 0.987861449737071 119 0.284323589049747 4 2 2 -20.9827528042639 LTS-039 chr8 22462364 22463190 827 * CCAR2 NA 0 NA 0.522 1 NA NA NA NA NA LTS-039 chr8 22463191 24157598 1694408 * c(LOC100507156, ADAM28, NKX2-6, PEBP4, EGR3, R3HCC1, RHOBTB2, LOC254896, LOC286059, LOC389641, LOXL2, NKX3-1, SLC25A37, BIN3, CCAR2, STC1, BIN3-IT1, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, CHMP7, ENTPD4) 0.448057772628026 44 0.051513350349891 0.555039384864813 1557 0.272027133725078 2 1 1 -6.82773586726638 LTS-039 chr8 24157599 24166117 8519 * ADAM28 NA 0 NA 0.314 1 NA NA NA NA NA LTS-039 chr8 24166118 25270370 1104253 * c(ADAM28, ADAMDEC1, NEFM, NEFL, PPP2R2A, DOCK5, ADAM7) 0.435296419885713 17 0.0497079707183986 0.463437790941961 951 0.209613724313977 2 1 1 -7.00368271060938 LTS-039 chr8 25270371 26613957 1343587 * c(PNMA2, ADRA1A, CDCA2, DPYSL2, GNRH1, KCTD9, PPP2R2A, EBF2, BNIP3L, DOCK5) 0.386418963418105 23 0.14799521945062 0.661474196843848 863 0.361863332145525 3 2 1 -6.77166084965778 LTS-039 chr8 26613958 27101394 487437 * c(ADRA1A, STMN4) 0.454750585642106 10 0.0372691412416343 0.315220537165373 199 0.131315334675575 2 1 1 -9.76382659631837 LTS-039 chr8 27101395 27142391 40997 * STMN4 NA 0 NA 0.542 1 NA NA NA NA NA LTS-039 chr8 27142392 27455887 313496 * c(CHRNA2, CLU, EPHX2, PTK2B, TRIM35) 0.42125320990241 18 0.0571723972432147 0.491074190030629 534 0.211469513652551 2 1 1 -6.77467569818627 LTS-039 chr8 27455888 27456020 133 * CLU NA 0 NA 0.762 1 NA NA NA NA NA LTS-039 chr8 27456021 28424449 968429 * c(MIR4287, MIR4288, MIR3622A, MIR3622B, CLU, ESCO2, FBXO16, SCARA5, NUGGC, SCARA3, PNOC, ELP3, CCDC25, PBK, ZNF395, FZD3) 0.436999663487494 47 0.078085350253068 0.631908851744212 1143 0.299736398496892 2 1 1 -6.92744386194312 LTS-039 chr8 28424450 28424584 135 * FZD3 NA 0 NA 1.408 1 NA NA NA NA NA LTS-039 chr8 28424585 28427548 2964 * FZD3 0.422221230876521 7 0.0402314731096368 1.04089495083325 67 0.47073711504296 7 4 3 -6.73542496625734 LTS-039 chr8 28427549 31031219 2603671 * c(RBPMS-AS1, MIR3148, SMIM18, MIR548O2, DCTN6, RBPMS, DUSP4, EXTL3, KIF13B, LEPROTL1, FAM183CP, GSR, GTF2E2, PURG, SARAF, PPP2CB, INTS9, TEX15, LINC00589, MBOAT4, WRN, HMBOX1, FZD3, UBXN8) 0.440706335753052 27 0.0548487430611187 0.568454039398116 2044 0.24051054113725 2 1 1 -6.87729390302716 LTS-039 chr8 31031220 31496806 465587 * WRN NA 0 NA 0.29 1 NA NA NA NA NA LTS-039 chr8 31496807 33246591 1749785 * c(NRG1-IT3, NRG1, FUT10) 0.375065416105404 9 0.146346145984254 0.394307156661792 243 0.214867917451957 1 1 0 -7.49144095748345 LTS-039 chr8 33246592 33246685 94 * FUT10 0.32 1 NA 0.628948721791672 3 0.539378654873673 3 3 0 -5.76441303534092 LTS-039 chr8 33246686 33342318 95633 * c(TTI2, FUT10) NA 0 NA 0.39217341511934 45 0.435082692709041 1 NA NA -5.76826867412563 LTS-039 chr8 33342319 33342322 4 * TTI2 NA 0 NA 0.526 1 NA NA NA NA NA LTS-039 chr8 33342323 36925066 3582744 * c(UNC5D, KCNU1, DUSP26, RNF122, TTI2, MAK16) 0.27617907707294 4 0.17143195929192 0.682437251208858 661 0.510934851935265 3 2 1 -6.92572676568709 LTS-039 chr8 36925067 36925151 85 * character(0) NA 0 NA 1.173 1 NA NA NA NA NA LTS-039 chr8 36925152 37716731 791580 * c(ERLIN2, PROSC, ADGRA2, BRF2, LOC728024, ZNF703, RAB11FIP1) 0.254985407306847 3 0.215006976630992 1.33037717476969 709 0.642542352012094 6 5 1 -6.76116264414684 LTS-039 chr8 37716732 38117788 401057 * c(GOT1L1, ADRB3, EIF4EBP1, DDHD2, LSM1, STAR, RAB11FIP1, ASH2L, BAG4) 0.325738582221739 6 0.168707340286861 0.789030928792739 717 0.451341471127487 4 3 1 -6.76735111057269 LTS-039 chr8 38117789 38120662 2874 * c(DDHD2, PLPP5) NA 0 NA 1.131 1 NA NA NA NA NA LTS-039 chr8 38120663 38254683 134021 * c(LETM2, WHSC1L1, PLPP5) 0.368 1 NA 1.02142007242293 330 0.401230010392734 5 5 0 -5.76558516191958 LTS-039 chr8 38254684 38257798 3115 * LETM2 NA 0 NA 2.054 1 NA NA NA NA NA LTS-039 chr8 38257799 38269230 11432 * c(LETM2, FGFR1) NA 0 NA 1.89966886480665 54 0.570105468254439 10 NA NA -5.76444165218118 LTS-039 chr8 38269231 38912128 642898 * c(HTRA4, FGFR1, RNF5P1, C8orf86, PLEKHA2, TACC1, TM2D2, ADAM9) 0.351261356602134 10 0.0617889778016903 0.922685724755007 761 0.395683072647199 3 2 1 -6.95685832056485 LTS-039 chr8 38912129 38913088 960 * ADAM9 NA 0 NA 0.61 1 NA NA NA NA NA LTS-039 chr8 38913089 40438844 1525756 * c(LOC100130964, ADAM3A, IDO2, ADAM32, ADAM2, ADAM5, IDO1, C8orf4, ZMAT4, ADAM18, ADAM9) 0.347594895417917 8 0.150010237745867 0.728139523468568 672 0.339121266527768 3 2 1 -6.75214483394271 LTS-039 chr8 40438845 40532132 93288 * ZMAT4 NA 0 NA 1.092 1 NA NA NA NA NA LTS-039 chr8 40532133 41455923 923791 * c(GPAT4, GOLGA7, SFRP1, ZMAT4, GINS4) 0.236302842215183 7 0.166034133036955 1.16642630769303 310 0.771605953433788 5 4 1 -6.74239428164847 LTS-039 chr8 41455924 43052805 1596882 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, PLAT, POLB, THAP1, MIR486-1, SLC20A2, VDAC3, KAT6A, RNF170, POMK, HOOK3, CHRNA6) 0.321813332793895 18 0.127808335362899 0.784894452616448 2140 0.534333820057752 4 3 1 -6.80870650294999 LTS-039 chr8 43052806 43212050 159245 * c(HGSNAT, POTEA) NA 0 NA 0.688223119340978 123 0.307243097896196 3 NA NA -5.76550648322375 LTS-039 chr8 47752736 47759712 6977 * LINC00293 0.414 1 NA 0.474322630460638 23 0.190161632934502 2 2 0 -5.76587393592645 LTS-039 chr8 47759713 48114516 354804 * c(LOC100287846, LINC00293) 0.401286598286759 2 0.0240416305603426 0.532475288618064 77 0.158795991072155 2 1 1 -7.51847724328347 LTS-039 chr8 48114517 48173114 58598 * character(0) NA 0 NA 1.583 1 NA NA NA NA NA LTS-039 chr8 48173115 51664773 3491659 * c(CEBPD, SPIDR, MCM4, C8orf22, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.190384479621077 7 0.196756557342171 0.80311214902854 1116 0.456848123951324 3 3 0 -6.95453944824444 LTS-039 chr8 51664774 51705243 40470 * SNTG1 NA 0 NA 0.417 1 NA NA NA NA NA LTS-039 chr8 51705244 52387737 682494 * c(PXDNL, SNTG1) NA 0 NA 0.450475557920725 160 0.141351859110163 2 NA NA -6.27076497884227 LTS-039 chr8 52387738 52387756 19 * PXDNL NA 0 NA 0.628 1 NA NA NA NA NA LTS-039 chr8 52387757 54967788 2580032 * c(LYPLA1, PCMTD1, PXDNL, NPBWR1, FAM150A, OPRK1, ATP6V1H, TCEA1, RGS20, ST18, RB1CC1) 0.383737979395491 35 0.0700240894924289 0.712293771231769 1163 0.376293951210102 3 2 1 -6.75243440579773 LTS-039 chr8 54967789 54974691 6903 * LYPLA1 NA 0 NA 1.907 1 NA NA NA NA NA LTS-039 chr8 54974692 55373447 398756 * c(LYPLA1, MRPL15, SOX17) 0.270813279314301 5 0.0329469270190711 1.95803994698604 112 0.82984214973967 12 9 3 -6.74754631113546 LTS-039 chr8 55373448 55533469 160022 * c(RP1, SOX17) NA 0 NA 0.532 1 NA NA NA NA NA LTS-039 chr8 55533470 55682383 148914 * RP1 0.241 1 NA 0.803728941987449 234 0.249778295737211 4 4 0 -5.77982728305135 LTS-039 chr8 55682384 56014949 332566 * RP1 NA 0 NA 0.244 1 NA NA NA NA NA LTS-039 chr8 56014950 56438116 423167 * c(SBF1P1, XKR4) NA 0 NA 0.457564780534053 120 0.122581641462045 2 NA NA -6.11537189355472 LTS-039 chr8 56438117 61135364 4697248 * c(LINC00968, LINC01606, XKR4, TMEM68, UBXN2B, CYP7A1, SDR16C5, LINC00588, SNORD54, LOC286177, LYN, MOS, PENK, PLAG1, IMPAD1, RPS20, SDCBP, CA8, CHCHD7, NSMAF, FAM110B, TGS1, TOX) 0.354579436153791 27 0.0594830532020139 0.70884465872405 1549 0.33753417906669 3 2 1 -6.77942168716505 LTS-039 chr8 61135365 61471524 336160 * c(RAB2A, CA8) 0.260817416069556 5 0.0660590644802059 1.42853034519798 58 0.534329952826527 8 6 2 -6.77639701162763 LTS-039 chr8 61471525 61482449 10925 * RAB2A NA 0 NA 0.698 1 NA NA NA NA NA LTS-039 chr8 61482450 67109558 5627109 * c(MIR124-2HG, LOC100130298, LINC00967, MIR4470, YTHDF3-AS1, CRH, CLVS1, YTHDF3, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, ASPH, PDE7A, ARMC1, LINC00251, CHD7, RAB2A, UG0898H09, TTPA, TRIM55, DNAJC5B, GGH, CYP7B1, MTFR1) 0.350700850838634 27 0.093615385785887 0.670218653170006 1781 0.379391470582619 3 2 1 -6.84317998064324 LTS-039 chr8 67109559 67341241 231683 * RRS1-AS1 NA 0 NA 1.517 1 NA NA NA NA NA LTS-039 chr8 67341242 67476373 135132 * c(ADHFE1, RRS1, C8orf46, MYBL1) 0.382919314834549 2 0.0997020561473033 1.14984008469793 287 0.563715637206906 8 5 3 -6.76237735236095 LTS-039 chr8 67476374 67476377 4 * MYBL1 NA 0 NA 0.931 1 NA NA NA NA NA LTS-039 chr8 67476378 68255948 779571 * c(TCF24, C8orf44-SGK3, ARFGEF1, COPS5, MCMDC2, SGK3, PTTG3P, PPP1R42, MYBL1, C8orf44, SNHG6, SNORD87, CSPP1, VCPIP1) 0.250499962118303 6 0.214071639099313 0.823532795176754 1133 0.558264428274895 4 3 1 -6.7713693127508 LTS-039 chr8 68255949 68334398 78450 * character(0) NA 0 NA 0.444 1 NA NA NA NA NA LTS-039 chr8 68334399 73850265 5515867 * c(MSC-AS1, LINC01592, NCOA2, C8orf34, EYA1, SULF1, TRAM1, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, LACTB2, CPA6, PRDM14, PREX2, SLCO5A1, TRPA1, MSC, KCNB2) 0.362061786698367 63 0.118872457004582 0.671190159627894 2084 0.353246969971305 3 2 1 -6.82436653559938 LTS-039 chr8 73850266 74462605 612340 * c(STAU2-AS1, C8orf89, RDH10, SBSPON, STAU2, RPL7, TERF1, KCNB2) 0.238908712951633 7 0.0462992337692434 1.9656691901062 388 0.963866946980854 9 7 2 -6.76234770134931 LTS-039 chr8 74462606 74462722 117 * STAU2 NA 0 NA 0.924 1 NA NA NA NA NA LTS-039 chr8 74462723 76479118 2016396 * c(MIR2052, MIR5681A, MIR5681B, LY96, STAU2, HNF4G, MIR2052HG, PI15, GDAP1, TMEM70, UBE2W, JPH1, TCEB1, CRISPLD1) 0.354777179275825 33 0.113368574623311 0.695913212555834 1044 0.465706100933684 3 2 1 -6.74814183831386 LTS-039 chr8 77616250 77776562 160313 * ZFHX4 0.326096701294873 2 0.0190918830920368 0.414170171664023 256 0.179822818399548 4 3 1 -9.21929557808383 LTS-039 chr8 77776563 80578384 2801822 * c(LOC101241902, STMN2, IL7, ZC2HC1A, PKIA, PEX2, ZFHX4) 0.239329335247107 8 0.169170613371742 0.608785662240415 414 0.383827457827012 2 2 0 -7.06913024571288 LTS-039 chr8 80578385 80676206 97822 * STMN2 NA 0 NA 2.513 1 NA NA NA NA NA LTS-039 chr8 80676207 80831089 154883 * HEY1 0.351298957286311 2 0.0275771644662754 1.67011665481419 81 0.543241917440285 9 6 3 -6.74169419392459 LTS-039 chr8 80831090 80831217 128 * c(MRPS28, TPD52) NA 0 NA 0.676 1 NA NA NA NA NA LTS-039 chr8 80831218 81905358 1074141 * c(MIR5708, MRPS28, PAG1, ZNF704, ZBTB10, TPD52) 0.356254023510675 11 0.128076610596229 0.971057750786824 809 0.479297853484087 5 3 2 -6.85343039035274 LTS-039 chr8 81905359 81905397 39 * PAG1 0.447 1 NA 0.711 1 NA NA NA NA NA LTS-039 chr8 81905398 86126684 4221287 * c(RALYL, E2F5, FABP4, FABP5, SLC10A5, IMPA1, C8orf59, PMP2, PAG1, SNX16, FABP9, FABP12, ZFAND1, LRRCC1, CHMP4C) 0.35740898601417 18 0.107935301971898 0.668655292484485 773 0.358772416060026 3 2 1 -6.81684150659132 LTS-039 chr8 86126685 86196351 69667 * c(E2F5, CA13, C8orf59) 0.330035409150249 6 0.0725021838751542 1.03654664151907 153 0.524338493102649 7 5 2 -6.7901630635598 LTS-039 chr8 86196352 86239922 43571 * CA13 NA 0 NA 0.685 1 NA NA NA NA NA LTS-039 chr8 86239923 89340315 3100393 * c(REXO1L2P, WWP1, DCAF4L2, SLC7A13, CNBD1, ATP6V0D2, REXO1L1P, CA13, MMP16, RMDN1, CNGB3, CA1, CA2, CA3, PSKH2, CPNE3) 0.344507356659469 9 0.141125830378425 0.601840768279481 1253 0.282188540325729 2 1 1 -7.29662926920451 LTS-039 chr8 90770017 90996915 226899 * c(NBN, OSGIN2, RIPK2) 0.379837315072708 11 0.0518580229612983 0.872509956407663 331 0.452133211661799 3 2 1 -6.77756954745058 LTS-039 chr8 90996916 91095188 98273 * c(DECR1, CALB1) 0.321 1 NA 0.47083476970244 144 0.224342050069292 2 2 0 -5.78119148383646 LTS-039 chr8 91634216 95541575 3907360 * c(C8orf88, LRRC69, MIR378D2, MIR4661, FSBP, CDH17, SLC26A7, FAM92A1, TMEM64, RAD54B, KIAA1429, GEM, TRIQK, C8orf87, RBM12B, FLJ46284, OTUD6B, PDP1, RBM12B-AS1, TMEM55A, NECAB1, LINC00535, RUNX1T1, TMEM67) 0.352234669270541 29 0.100614160830402 0.715405366576915 1976 0.369759733352216 3 2 1 -6.75470300520773 LTS-039 chr8 95541576 95543135 1560 * KIAA1429 NA 0 NA 1.085 1 NA NA NA NA NA LTS-039 chr8 95543136 99306654 3763519 * c(LOC100288748, MIR3150A, LOC100500773, MIR3150B, C8orf37-AS1, RIDA, CPQ, POP1, NDUFAF6, C8orf37, ERICH5, KIAA1429, SNORA72, DPY19L4, GDF6, MATN2, MTERF3, ESRP1, LAPTM4B, INTS8, RPL30, LINC01298, SDC2, UQCRB, PLEKHF2, NIPAL2, TSPYL5, CCNE2, MTDH, TP53INP1, PTDSS1) 0.329861501063326 41 0.0703272489951051 0.935915624221205 2338 0.471396149474499 4 3 1 -6.88068791477145 LTS-039 chr8 99306655 99440136 133482 * KCNS2 NA 0 NA 0.474 1 NA NA NA NA NA LTS-039 chr8 99440137 101157569 1717433 * c(MIR875, OSR2, COX6C, VPS13B, RGS22, FBXO43, KCNS2, STK3, MIR599) 0.299726768254969 9 0.182391063377568 0.676614614893782 900 0.313869591318935 3 2 1 -6.84957025797156 LTS-039 chr8 101157570 103662476 2504907 * c(MIR4471, MIR5680, ANKRD46, SNX31, RNF19A, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, POLR2K, SPAG1, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.35674805187154 32 0.0872182098476703 0.915885165226185 1396 0.685052846643479 3 2 1 -6.94738922630887 LTS-039 chr8 103662477 103839366 176890 * c(AZIN1, KLF10) 0.301 1 NA 1.69075850225253 90 0.810724290545743 8 8 0 -5.76476252853363 LTS-039 chr8 103839367 103839372 6 * AZIN1 NA 0 NA 0.869 1 NA NA NA NA NA LTS-039 chr8 103839373 105502344 1662972 * c(MIR3151, BAALC-AS1, CTHRC1, BAALC-AS2, DPYS, DCAF13, LRP12, AZIN1, ATP6V1C1, BAALC, SLC25A32, DCSTAMP, FZD6, RIMS2) 0.362428284121466 7 0.0466435316803847 0.786939493238668 1071 2.67716808759946 3 2 1 -6.75527407968348 LTS-039 chr8 105502345 109095131 3592787 * c(ABRA, ZFPM2, ANGPT1, LRP12, RSPO2, OXR1) 0.358674909333298 4 0.0559076619674501 0.581055763834409 706 0.284862832774078 3 2 1 -7.68946495241769 LTS-039 chr8 109095132 109213849 118718 * RSPO2 NA 0 NA 1.558 1 NA NA NA NA NA LTS-039 chr8 109213850 110576958 1363109 * c(TMEM74, EIF3E, ENY2, TRHR, NUDCD1, EBAG9, PKHD1L1, EMC2) 0.305583375641375 6 0.161209697805891 0.785980338026485 852 0.358498344334617 4 3 1 -6.8342227299216 LTS-039 chr8 110576959 110978540 401582 * c(SYBU, EBAG9) 0.419302141179982 2 0.0982878425849301 1.30303091050632 258 0.514706047200032 7 4 3 -6.74130035803181 LTS-039 chr8 110978541 114628084 3649544 * c(MIR2053, CSMD3, KCNV1) 0.283368331256329 5 0.194087093852219 0.59387645640269 491 0.329582960740248 2 2 0 -7.20999800615941 LTS-039 chr8 114628085 118849541 4221457 * c(MIR3610, LINC00536, SLC30A8, EXT1, AARD, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H, MED30) 0.295078238337367 6 0.161838705712406 0.901052811634891 914 0.446372784685903 4 3 1 -6.73454867984521 LTS-039 chr8 118849542 119122328 272787 * EXT1 NA 0 NA 2.35 1 NA NA NA NA NA LTS-039 chr8 119122329 119209581 87253 * c(EXT1, SAMD12) NA 0 NA 1.55469715372762 64 0.576294650165628 8 NA NA -5.76462802118867 LTS-039 chr8 119209582 120818642 1609061 * c(COLEC10, MAL2, SAMD12, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, TAF2) 0.33640597403989 18 0.09394526288377 0.696463506417126 571 0.377202182640326 3 2 1 -6.81690620764638 LTS-039 chr8 120818643 120831572 12930 * TAF2 NA 0 NA 1.528 1 NA NA NA NA NA LTS-039 chr8 120831573 121239567 407995 * c(DEPTOR, TAF2, COL14A1, DSCC1) 0.257664109034277 10 0.0649109646618607 1.45415807029029 269 0.755614530390612 9 7 2 -6.76363834021793 LTS-039 chr8 121239568 121240896 1329 * COL14A1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-039 chr8 121240897 122626099 1385203 * c(MTBP, MRPL13, HAS2, SNTB1, COL14A1) 0.366632004493564 8 0.0710914903487049 0.82606219616849 516 0.483726802957154 3 2 1 -6.8139347643841 LTS-039 chr8 122626100 123966349 1340250 * c(ZHX2, HAS2, HAS2-AS1) 0.343980557430828 3 0.0671739036630546 0.503737830497773 122 0.186293696301483 2 1 1 -7.65867773878135 LTS-039 chr8 123966350 124025460 59111 * c(ZHX2, DERL1) NA 0 NA 0.831 1 NA NA NA NA NA LTS-039 chr8 124025461 126163576 2138116 * c(FAM83A-AS1, ZHX1-C8orf76, MIR4663, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM91A1, NSMCE2, ATAD2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, TRMT12, WDYHV1, FER1L6, SQLE, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.358503379191484 44 0.0759268696502346 0.821106309227699 2173 0.378702463306381 3 2 1 -6.92865208984583 LTS-039 chr8 126163577 126168094 4518 * NSMCE2 NA 0 NA 1.084 1 NA NA NA NA NA LTS-039 chr8 126168095 127569760 1401666 * c(LINC00861, TRIB1, FAM84B, NSMCE2) 0.345791052791846 5 0.0285096474899287 1.19703378790448 218 0.488610399781998 6 4 2 -6.80068621192177 LTS-039 chr8 128099292 133036536 4937245 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR5194, ADCY8, EFR3A, ASAP1-IT1, MYC, ASAP1, FAM49B, POU5F1B, GSDMC, PVT1, CASC8, LINC00977, OC90) 0.356778601109354 36 0.113011405520761 0.695718357664888 925 0.361929949075658 3 2 1 -6.75370101226296 LTS-039 chr8 133036537 133806823 770287 * c(HHLA1, TMEM71, LRRC6, KCNQ3, PHF20L1, OC90, HPYR1) 0.415128670063542 15 0.0620739190688926 0.558091022166846 506 0.231013948229542 2 1 1 -6.79223825110976 LTS-039 chr8 133806824 133806931 108 * PHF20L1 NA 0 NA 0.989 1 NA NA NA NA NA LTS-039 chr8 133806932 134203571 396640 * c(PHF20L1, SLA, TG, WISP1) 0.386917286786898 24 0.0609093975519782 0.785345633041529 704 0.303632504925493 3 2 1 -6.79830084736114 LTS-039 chr8 134203572 134225152 21581 * WISP1 NA 0 NA 1.93 1 NA NA NA NA NA LTS-039 chr8 134225153 134467256 242104 * c(NDRG1, ST3GAL1, WISP1) 0.414 1 NA 1.16939725140454 178 0.425146554691931 6 6 0 -5.76820916589591 LTS-039 chr8 134467257 134467259 3 * ST3GAL1 NA 0 NA 0.837 1 NA NA NA NA NA LTS-039 chr8 134467260 140743508 6276249 * c(KHDRBS3, COL22A1, LINC01591, MIR30B, MIR30D, FAM135B, KCNK9, ZFAT, ZFAT-AS1, ST3GAL1, TRAPPC9) 0.356170793352314 32 0.111800513588756 0.650356424575234 1078 0.384623439087713 3 2 1 -6.9410597279229 LTS-039 chr8 140743509 140744203 695 * TRAPPC9 NA 0 NA 1.192 1 NA NA NA NA NA LTS-039 chr8 140744204 142459707 1715504 * c(PTP4A3, DENND3, AGO2, GPR20, MROH5, CHRAC1, SLC45A4, PTK2, LINC01300, TRAPPC9) 0.34414125941091 47 0.087227089928481 0.917122845755237 1299 0.404965630120137 4 3 1 -6.90437997584848 LTS-039 chr8 142459708 143740473 1280766 * c(MIR4472-1, TSNARE1, ARC, MROH5, ADGRB1, LINC00051, JRK) 0.328546847301035 16 0.115059966249488 0.519127897065221 483 0.267407749264538 2 1 1 -7.17745022535929 LTS-039 chr8 143740474 143745759 5286 * JRK NA 0 NA 0.878 1 NA NA NA NA NA LTS-039 chr8 143745760 143954473 208714 * c(LOC100288181, LYPD2, CYP11B1, GML, THEM6, LY6K, SLURP1, LYNX1, PSCA, LY6D, JRK) 0.381355446121288 18 0.07593299850156 0.88933941271337 444 0.399972667165254 3 2 1 -6.78271792000558 LTS-039 chr8 143954474 144032148 77675 * c(CYP11B1, CYP11B2) NA 0 NA 0.355104426477651 163 0.130225646197347 1 NA NA -5.76491608595216 LTS-039 chr8 144032149 144063664 31516 * LOC100133669 NA 0 NA 0.721 1 NA NA NA NA NA LTS-039 chr8 144063665 144105255 41591 * c(CDC42P3, LOC100133669, LY6E) 0.339 1 NA 1.28085248858607 52 0.514906351221174 6 6 0 -5.76445677760325 LTS-039 chr8 144105256 144124341 19086 * C8orf31 NA 0 NA 0.565 1 NA NA NA NA NA LTS-039 chr8 144124342 144241743 117402 * c(C8orf31, LY6H) NA 0 NA 0.51248560192204 67 0.187348283862716 2 NA NA -5.76687958242182 LTS-039 chr8 144241744 144295007 53264 * LY6H NA 0 NA 1.057 1 NA NA NA NA NA LTS-039 chr8 144295008 144940699 645692 * c(MIR937, FAM83H-AS1, CCDC166, MIR4664, RHPN1, TOP1MT, EEF1D, MAPK15, PUF60, ZC3H3, SCRIB, GLI4, ZNF707, BREA2, FAM83H, ZFP41, GPIHBP1, NRBP2, MAFA, MROH6, PYCRL, TSTA3, RHPN1-AS1, GSDMD, ZNF696, EPPK1, TIGD5, NAPRT, ZNF623) 0.383072596834228 77 0.0578029923044111 0.857217159780932 1958 0.363783391497679 3 2 1 -6.85882976652803 LTS-039 chr8 144940700 145001607 60908 * c(PLEC, EPPK1) 0.378000806085868 7 0.0475424622236345 0.616127258722791 379 0.204480126140148 3 2 1 -6.76348920225619 LTS-039 chr8 145001608 145017887 16280 * PLEC 0.337262285888174 2 0.0190918830920368 1.05125154222241 148 0.30178690137072 15 10 5 -6.88528362073232 LTS-039 chr8 145017888 145066004 48117 * c(GRINA, PLEC, MIR661, PARP10) 0.263 1 NA 1.2391436039734 175 0.387767593033374 6 6 0 -5.76443271188 LTS-039 chr8 145066005 145113619 47615 * c(OPLAH, GRINA, SPATC1) 0.198896434383245 2 0.0282842712474619 1.01955875270053 196 0.394570409606576 6 5 1 -6.86552734681073 LTS-039 chr8 145113620 145164477 50858 * c(CYC1, OPLAH, WDR97, EXOSC4, SHARPIN, MAF1, GPAA1) 0.173749296174072 2 0.163341666454092 1.62917427311415 296 0.691208995912735 8 7 1 -6.73494300437134 LTS-039 chr8 145164478 145164518 41 * WDR97 0.121 1 NA 0.392 1 NA NA NA NA NA LTS-039 chr8 145164519 145634684 470166 * c(MIR939, MIR1234, ADCK5, BOP1, FBXL6, CPSF1, HSF1, WDR97, TMEM249, HGH1, SCX, MROH1, SLC52A2, SCRT1, DGAT1) 0.253987141235483 15 0.107810989809989 0.936979941112218 790 0.411949332721612 5 4 1 -6.76520297291057 LTS-039 chr8 145634685 145637811 3127 * c(CPSF1, SLC39A4) NA 0 NA 2.212 1 NA NA NA NA NA LTS-039 chr8 145637812 145743118 105307 * c(MFSD3, GPT, TONSL, CYHR1, VPS28, SLC39A4, PPP1R16A, FOXH1, KIFC2, RECQL4) 0.272198777465959 7 0.0367034447585354 1.16514392620988 892 0.44753548011747 8 6 2 -6.77388125153593 LTS-039 chr8 145743119 145744892 1774 * c(RECQL4, LRRC14) NA 0 NA 2.295 1 NA NA NA NA NA LTS-039 chr8 145744893 145755395 10503 * c(C8orf82, LRRC24, ARHGAP39, LRRC14) NA 0 NA 1.70534804792323 188 0.756524368585683 9 NA NA -5.76443844536203 LTS-039 chr8 145755396 146228879 473484 * c(ZNF252P, TMED10P1, ZNF252P-AS1, COMMD5, ZNF517, ZNF250, RPL8, ZNF7, ZNF16, ARHGAP39, ZNF34, ZNF251) 0.265326076168738 19 0.127140480392304 1.07089577946381 901 0.483465102448445 5 4 1 -6.74470339126034 LTS-039 chr8 146228880 146280802 51923 * c(ZNF252P-AS1, C8orf33) 0.217 1 NA 1.86595373188741 87 0.477974089694906 9 9 0 -5.76462067056442 LTS-039 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 1.47485122329619 3 0.190525588832577 7 NA NA -5.76441152359574 LTS-039 chr9 14732 14764 33 * WASH1 0.273 1 NA 0.296 1 NA NA NA NA NA LTS-039 chr9 14765 3395642 3380878 * c(WASH1, DMRT2, C9orf66, KCNV2, DMRT1, FOXD4, KANK1, VLDLR-AS1, CBWD1, DMRT3, RFX3, FAM138C, SMARCA2, VLDLR, DOCK8, PUM3) 0.273477550238564 40 0.0593485791418282 1.07303481412953 1519 0.637840122446747 5 4 1 -6.84519342892128 LTS-039 chr9 3395643 3452381 56739 * RFX3 NA 0 NA 2.759 1 NA NA NA NA NA LTS-039 chr9 3452382 4117998 665617 * c(GLIS3, RFX3, GLIS3-AS1) NA 0 NA 1.55616133526579 152 0.738112537716244 8 NA NA -5.7653726201508 LTS-039 chr9 4117999 4646582 528584 * c(GLIS3, SPATA6L, SLC1A1) 0.267639467427603 7 0.0457081841166119 0.873438043331021 216 0.427771789481224 5 4 1 -6.9184421631559 LTS-039 chr9 4646583 4655990 9408 * SPATA6L NA 0 NA 1.403 1 NA NA NA NA NA LTS-039 chr9 4655991 4697858 41868 * c(PLPP6, SPATA6L, CDC37L1) 0.284632493434249 4 0.0335956346370576 1.94579262513392 120 0.95980914360974 15 11 4 -6.74649656055466 LTS-039 chr9 4697859 7799822 3101964 * c(MIR4665, RCL1, INSL6, UHRF2, KIAA2026, KDM4C, MLANA, RANBP6, GLDC, CD274, INSL4, JAK2, MIR101-2, AK3, CDC37L1, PLGRKT, RIC1, RLN1, RLN2, ERMP1, PDCD1LG2, TPD52L3, IL33, TMEM261) 0.262388075442295 32 0.0883968325224383 0.98098791934793 1984 0.487749252706846 5 4 1 -6.81102436501995 LTS-039 chr9 7799823 7799870 48 * character(0) NA 0 NA 0.687 1 NA NA NA NA NA LTS-039 chr9 7799871 13945639 6145769 * c(LINC00583, LURAP1L, LINC01235, PTPRD, TYRP1, MPDZ) 0.287653867244581 8 0.0377413660892887 0.788997439483301 741 0.35623571988293 4 3 1 -7.18051810681747 LTS-039 chr9 13945640 14081833 136194 * character(0) NA 0 NA 1.35 1 NA NA NA NA NA LTS-039 chr9 14081834 14398521 316688 * NFIB NA 0 NA 1.57769345199973 222 0.878544454612156 8 NA NA -5.76453472115854 LTS-039 chr9 14398522 16253226 1854705 * c(C9orf92, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, NFIB, SNAPC3, CER1) 0.304737862639813 15 0.109241976931075 0.934287383717026 1056 0.442415529666874 4 3 1 -6.74795648651656 LTS-039 chr9 16253227 16416365 163139 * c(C9orf92, BNC2) NA 0 NA 2.572 1 NA NA NA NA NA LTS-039 chr9 16416366 16418773 2408 * BNC2 NA 0 NA 2.17992033293458 52 0.6286406661234 11 NA NA -5.76441061816588 LTS-039 chr9 16418774 18906794 2488021 * c(MIR3152, BNC2, CNTLN, SH3GL2, ADAMTSL1) 0.283795794409674 15 0.0972424559443829 0.826928680307954 653 0.377770416054799 4 3 1 -6.80396698801403 LTS-039 chr9 18906795 19049464 142670 * c(RRAGA, SAXO1, ADAMTSL1) 0.313 1 NA 0.54117058924426 127 0.240623057276393 2 2 0 -5.76496516223071 LTS-039 chr9 19049465 19372394 322930 * c(RRAGA, PLIN2, HAUS6, DENND4C, SCARNA8) 0.199057544313753 2 0.0933380951166243 0.934635897362156 496 0.536626957724146 6 5 1 -6.80157631343773 LTS-039 chr9 19372395 19380129 7735 * c(DENND4C, RPS6) 0.231748108688551 2 0.152735064736294 1.69270789416038 80 0.792178129242008 10 8 2 -6.73409449979894 LTS-039 chr9 19380130 19895923 515794 * c(SLC24A2, ACER2, RPS6) NA 0 NA 0.641785217838046 147 0.244117257466135 3 NA NA -5.81876719830493 LTS-039 chr9 19895924 21006687 1110764 * c(MIR4473, MIR4474, HACD4, MLLT3, FOCAD, MIR491) 0.289801792462226 9 0.0912667031896689 0.949011224689722 477 0.413207715394472 4 3 1 -6.752459616142 LTS-039 chr9 21006688 21351324 344637 * c(IFNA4, IFNA5, IFNA6, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, HACD4, KLHL9) 0.395 1 NA 0.65360867986946 304 0.56453669349713 3 3 0 -5.76904140227819 LTS-039 chr9 21351325 21367329 16005 * character(0) NA 0 NA 0.397 1 NA NA NA NA NA LTS-039 chr9 21367330 21441192 73863 * c(IFNA1, IFNA2, IFNA8, IFNA13) 0.309933955028923 2 0.113844191771034 0.402247263034431 78 0.293136194463987 1 1 0 -6.94645132905064 LTS-039 chr9 21441193 21931181 489989 * c(IFNE, IFNA1, MIR31, MTAP, MIR31HG) 0.300766361390354 3 0.0662897679384483 1.00356607930997 203 0.476864976716294 4 3 1 -6.75242983536134 LTS-039 chr9 21931182 21967116 35935 * MTAP NA 0 NA 1.626 1 NA NA NA NA NA LTS-039 chr9 21967117 22009254 42138 * c(CDKN2B-AS1, CDKN2A, CDKN2B, MTAP, CDKN2A-AS1) 0.241956848498277 4 0.0391365132154957 1.9539090437152 149 0.767606966556527 9 7 2 -6.75043161267465 LTS-039 chr9 22009255 22029407 20153 * c(CDKN2B-AS1, CDKN2B, MTAP) NA 0 NA 1.316 1 NA NA NA NA NA LTS-039 chr9 22029408 23692368 1662961 * c(CDKN2B-AS1, ELAVL2, LINC01239, MTAP, DMRTA1) 0.184134000799127 4 0.0867078427825304 0.880745281022464 124 0.423899481856954 5 4 1 -7.24564940684025 LTS-039 chr9 23692369 24545638 853270 * c(IZUMO3, ELAVL2) NA 0 NA 0.53301862178708 89 0.17771168160063 2 NA NA -5.76469584299216 LTS-039 chr9 24545639 24545822 184 * IZUMO3 NA 0 NA 2.032 1 NA NA NA NA NA LTS-039 chr9 24545823 27525064 2979242 * c(LOC100506422, LINC00032, TUSC1, EQTN, IFNK, LRRC19, TEK, MOB3B, CAAP1, IFT74, PLAA) 0.238788496378725 28 0.104732362356951 1.10721294117567 942 0.5399171673458 5 4 1 -6.74358045074197 LTS-039 chr9 27525065 27546522 21458 * c(IFNK, MOB3B) NA 0 NA 1.756 1 NA NA NA NA NA LTS-039 chr9 27546523 27566993 20471 * C9orf72 0.242510083884663 3 0.014 1.85613986106437 103 0.594203048542661 5 4 1 -6.8210371773116 LTS-039 chr9 27566994 30690619 3123626 * c(MIR876, MIR873, LINGO2, C9orf72, LINC01242) 0.300709553917117 2 0.0127279220613579 0.613949560431988 77 0.232086324153737 4 3 1 -9.65414136151087 LTS-039 chr9 32384649 32573221 188573 * c(TOPORS-AS1, TOPORS, DDX58, NDUFB6, ACO1) 0.275388291498543 7 0.0459217761395345 1.20603531748326 446 0.776564997024537 8 6 2 -6.74914062258084 LTS-039 chr9 32573222 32629451 56230 * character(0) NA 0 NA 0.676 1 NA NA NA NA NA LTS-039 chr9 32629452 32973717 344266 * c(TAF1L, TMEM215, APTX) 0.327 1 NA 0.560394493887041 200 0.175704316421212 2 2 0 -5.7840610131011 LTS-039 chr9 32973718 32974355 638 * APTX NA 0 NA 1.44 1 NA NA NA NA NA LTS-039 chr9 32974356 33447528 473173 * c(B4GALT1, SPINK4, DNAJA1, AQP3, AQP7, NFX1, CHMP5, APTX, SMU1, BAG1) 0.241016055898618 12 0.0800448264563316 1.29487021386943 736 0.65497074069181 5 4 1 -6.76053235833464 LTS-039 chr9 33447529 33461574 14046 * c(AQP3, NOL6) 0.257775920195776 2 0.0311126983722081 0.696640816417582 6 0.341035872990902 5 4 1 -6.81027460921202 LTS-039 chr9 33461575 33461881 307 * NOL6 0.304 1 NA 0.94865697980987 7 0.170641785760754 4 4 0 -5.76443429018633 LTS-039 chr9 33461882 34385745 923864 * c(SNORD121A, SNORD121B, PTENP1, DCAF12, ANXA2P2, NUDT2, KIF24, SUGT1P1, ANKRD18B, UBAP1, UBE2R2, UBAP2, PRSS3, KIAA1161, NOL6, C9orf24) 0.379543982408209 56 0.0988115598027344 0.86061405689466 1249 0.481697826722383 3 2 1 -6.82294645356204 LTS-039 chr9 34385746 34406740 20995 * c(FAM219A, C9orf24) 0.323940994759575 4 0.0326751689615626 0.490890762270573 105 0.267480959577058 7 5 2 -7.02174455038339 LTS-039 chr9 34406741 34407097 357 * FAM219A NA 0 NA 0.845 1 NA NA NA NA NA LTS-039 chr9 34407098 34724241 317144 * c(SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, GALT, FAM205A, DNAI1, IL11RA, ENHO, CNTFR-AS1, CCL19, CCL21) 0.409523642854263 9 0.0407707002637924 0.832764030288414 615 0.394398145849787 5 3 2 -6.81232493455906 LTS-039 chr9 34724242 34724312 71 * FAM205A NA 0 NA 0.421 1 NA NA NA NA NA LTS-039 chr9 34724313 34726335 2023 * FAM205A 0.366111365915122 5 0.0749753292757024 0.39692542502938 61 0.326991177334565 3 2 1 -6.73957712039194 LTS-039 chr9 34726336 34833374 107039 * c(FAM205A, FAM205BP) 0.348317678684768 6 0.04961720131836 0.670753784239825 88 0.253433652815309 3 2 1 -6.86071263151564 LTS-039 chr9 34833375 34835727 2353 * FAM205BP 0.417176868874435 3 0.0388115103201787 0.326518428759344 71 0.221026779880962 7 4 3 -6.79911378821829 LTS-039 chr9 34835728 35062392 226665 * c(C9orf131, PHF24, DNAJB5, FAM205BP, VCP) 0.380187468359704 6 0.0581747367849654 0.721757150957909 437 0.23573026858246 3 2 1 -6.74805753178521 LTS-039 chr9 35062393 35062866 474 * VCP NA 0 NA 1.033 1 NA NA NA NA NA LTS-039 chr9 35062867 35106084 43218 * c(FANCG, STOML2, VCP, FAM214B, PIGO) 0.399406149405608 3 0.0707413127764345 1.24049892342169 336 0.600800709471766 5 3 2 -6.74158823737849 LTS-039 chr9 35106085 35106317 233 * FAM214B NA 0 NA 0.651 1 NA NA NA NA NA LTS-039 chr9 35106318 35605590 499273 * c(UNC13B, ATP8B5P, TESK1, FAM166B, FAM214B, RUSC2) 0.203835799656392 8 0.160419761874901 0.780882282479492 453 0.394771921743077 3 3 0 -6.91127777426539 LTS-039 chr9 35605591 35605707 117 * TESK1 NA 0 NA 1.421 1 NA NA NA NA NA LTS-039 chr9 35605708 35755299 149592 * c(MIR4667, CREB3, CCDC107, SIT1, GBA2, RMRP, MSMP, TESK1, TLN1, TPM2, CA9, ARHGEF39, CD72, RGP1) 0.263692541296819 17 0.0410061867642088 1.38487477833569 1005 0.605159868365503 8 6 2 -6.79519641492537 LTS-039 chr9 35755300 35792186 36887 * character(0) NA 0 NA 2.86676752675717 68 1.61648399298014 15 NA NA -5.76441023921017 LTS-039 chr9 35792187 35810135 17949 * c(SPAG8, NPR2) NA 0 NA 1.01910603821533 152 0.293943966166564 5 NA NA -5.76473143167339 LTS-039 chr9 35810136 35847287 37152 * c(SPAG8, FAM221B, TMEM8B, HINT2) NA 0 NA 1.87123412845082 201 0.553338468521997 9 NA NA -5.76453928631861 LTS-039 chr9 35847288 35852764 5477 * TMEM8B NA 0 NA 0.998 1 NA NA NA NA NA LTS-039 chr9 35852765 36834727 981963 * c(GNE, MIR4475, CLTA, RNF38, GLIPR2, LINC00961, OR13J1, TMEM8B, OR2S2, HRCT1, RECK, CCIN, LINC00950, MELK) 0.363546654069174 13 0.0479600528217669 0.77331549932199 843 0.327779706394249 3 2 1 -6.78613943635294 LTS-039 chr9 36834728 37186943 352216 * c(EBLN3P, MIR4540, MIR4476, PAX5, ZCCHC7) 0.375 1 NA 0.533152084703393 219 0.319841620927426 2 2 0 -5.76445101705043 LTS-039 chr9 37186944 37511079 324136 * c(FBXO10, POLR1E, ZCCHC7, GRHPR, ZBTB5) 0.336 1 NA 1.0881801121264 343 1.21704788840958 5 5 0 -5.76443891893437 LTS-039 chr9 37511080 37746887 235808 * c(FRMPD1, FBXO10, TOMM5) 0.289470831307589 2 0.00494974746830584 0.768905062210756 288 0.296159430432541 4 3 1 -8.05235511449572 LTS-039 chr9 37746888 38414187 667300 * c(TRMT10B, ALDH1B1, FRMPD1, IGFBPL1, EXOSC3, SHB, DCAF10, SLC25A51) 0.260184503296566 16 0.0416171038556665 1.15403375580875 371 0.580725521170738 5 4 1 -6.79402108164589 LTS-039 chr9 38414188 38423908 9721 * IGFBPL1 NA 0 NA 0.462 1 NA NA NA NA NA LTS-039 chr9 38423909 39140675 716767 * c(FAM95C, FAM201A, ANKRD18A, IGFBPL1, CNTNAP3) 0.314342580973107 3 0.0376430604494374 0.615353271299433 240 0.277856671879747 4 3 1 -7.53259996194736 LTS-039 chr9 39140676 39172772 32097 * CNTNAP3 NA 0 NA 0.314 1 NA NA NA NA NA LTS-039 chr9 39172773 43820865 4648093 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, FAM74A1, ZNF658B, AQP7P3, NA, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B, CNTNAP3) 0.166510265063734 2 0.307591449816148 0.379388415201182 94 0.381726436163241 1 1 0 -6.88863404180961 LTS-039 chr9 43820866 44175697 354832 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.396794019555173 19 0.253233879370077 1 NA NA -5.81549422535391 LTS-039 chr9 65602571 66457313 854743 * LOC286297 0.364 1 NA 0.942533769708439 8 0.266765513673927 4 4 0 -5.78646276781881 LTS-039 chr9 66457314 71437722 4980409 * c(FRG1HP, FAM27B, LOC100133920, FAM122A, TMEM252, LOC286297, FOXD4L3, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5, PGM5-AS1, PGM5P2, FRG1JP, CBWD6, FOXD4L6, FOXD4L5, ANKRD20A4, PIP5K1B) 0.320573605166673 22 0.0969408263298999 0.772744222345693 277 0.426287035990205 3 2 1 -7.00293698703613 LTS-039 chr9 71437723 71439025 1303 * PIP5K1B NA 0 NA 0.524 1 NA NA NA NA NA LTS-039 chr9 71439026 72758711 1319686 * c(BANCR, C9orf135, FXN, MAMDC2, APBA1, PTAR1, C9orf135-AS1, PRKACG, PIP5K1B, FAM189A2, TJP2) 0.418446949825371 16 0.0647794977854362 0.539656500689302 893 0.233326078441701 2 1 1 -6.75839432486624 LTS-039 chr9 72758712 72783602 24891 * c(MAMDC2-AS1, MAMDC2) NA 0 NA 0.838 1 NA NA NA NA NA LTS-039 chr9 72783603 73150175 366573 * c(MAMDC2-AS1, SMC5-AS1, SMC5, MAMDC2, KLF9, TRPM3) 0.153810368751913 3 0.241909762790453 0.852890913681444 329 0.443517440775528 4 4 0 -6.77013729068384 LTS-039 chr9 73150176 73408650 258475 * TRPM3 0.397932628945648 7 0.176033140819184 0.538663812931131 231 0.255154618668404 2 1 1 -6.75425790684598 LTS-039 chr9 73408651 73442724 34074 * c(MIR204, TRPM3) 0.449 1 NA 0.537967725021402 11 0.189821734554004 2 2 0 -5.76451262687375 LTS-039 chr9 73442725 74867148 1424424 * c(C9orf57, C9orf85, TMEM2, ABHD17B, TRPM3, GDA) 0.434314111321549 19 0.0538867667032546 0.487607637458504 538 0.213500254813164 2 1 1 -6.86776617313727 LTS-039 chr9 74867149 74966372 99224 * c(ZFAND5, GDA) NA 0 NA 1.224 1 NA NA NA NA NA LTS-039 chr9 74966373 75243059 276687 * c(TMC1, ZFAND5) 0.457425449695332 4 0.0354812156875531 0.909799825949118 117 0.300459420056188 4 2 2 -7.05633822471813 LTS-039 chr9 75243060 75263454 20395 * TMC1 NA 0 NA 0.368 1 NA NA NA NA NA LTS-039 chr9 75263455 78974014 3710560 * c(TMC1, CARNMT1, TRPM6, ALDH1A1, OSTF1, ANXA1, PCSK5, NMRK1, C9orf40, RORB) 0.422439985979296 41 0.0844109286647693 0.479828062775815 1299 0.231627258252754 2 1 1 -7.13423304616353 LTS-039 chr9 78974015 79319862 345848 * c(PRUNE2, GCNT1, PCSK5, RFK, RPSAP9) 0.436920780334339 12 0.0677855352407782 0.585837856166251 366 0.283275588854672 2 1 1 -6.7631659060469 LTS-039 chr9 79319863 79635915 316053 * c(PRUNE2, FOXB2, PCA3) 0.452335824397104 12 0.0296857276185446 0.379993355364931 221 0.15987555578035 2 1 1 -7.76776650012708 LTS-039 chr9 79635916 79792366 156451 * c(VPS13A-AS1, VPS13A) NA 0 NA 0.821 1 NA NA NA NA NA LTS-039 chr9 79792367 82006675 2214309 * c(VPS13A-AS1, VPS13A, GNAQ, PSAT1, CEP78, GNA14) 0.396944721343394 25 0.124532458954818 0.640225060265128 1089 0.339116433705146 3 2 1 -6.88392277529769 LTS-039 chr9 82006676 82186633 179958 * character(0) NA 0 NA 1.014 1 NA NA NA NA NA LTS-039 chr9 82186634 82191200 4567 * TLE4 NA 0 NA 1.32541497169558 41 0.655796072742427 6 NA NA -5.76443044173526 LTS-039 chr9 82191201 82216177 24977 * TLE4 NA 0 NA 0.508 1 NA NA NA NA NA LTS-039 chr9 82216178 84530373 2314196 * c(SPATA31D5P, TLE1, TLE4) 0.460683146252362 8 0.0405850077878871 0.568383883430078 321 0.255911662019901 2 1 1 -7.14163522717815 LTS-039 chr9 84530374 84530454 81 * SPATA31D5P NA 0 NA 0.282 1 NA NA NA NA NA LTS-039 chr9 84530455 85594667 1064213 * c(RASEF, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1) 0.478 1 NA 0.36105295956629 145 0.103449349962495 1 1 0 -5.81827615085384 LTS-039 chr9 85594668 86568782 974115 * c(RASEF, FRMD3, UBQLN1, IDNK, KIF27, GKAP1, C9orf64) 0.384644581111355 9 0.15599982193722 0.572581549069672 764 0.313488420842404 2 1 1 -6.81883787062687 LTS-039 chr9 86568783 86570279 1497 * C9orf64 NA 0 NA 1.088 1 NA NA NA NA NA LTS-039 chr9 86570280 86593248 22969 * c(HNRNPK, MIR7-1, C9orf64) 0.454816664125444 3 0.0216333076527839 1.07077186636393 128 0.414377223913582 6 3 3 -7.4012248058081 LTS-039 chr9 86593249 86615788 22540 * c(HNRNPK, RMI1) NA 0 NA 0.602 1 NA NA NA NA NA LTS-039 chr9 86615789 88953711 2337923 * c(AGTPBP1, LOC389765, C9orf153, NTRK2, GOLM1, NAA35, SLC28A3, ZCCHC6, RMI1, ISCA1) 0.394656857745056 13 0.174626928343151 0.617430753512567 1242 0.392411706611805 3 2 1 -6.920867546023 LTS-039 chr9 88953712 88953810 99 * ZCCHC6 NA 0 NA 0.791 1 NA NA NA NA NA LTS-039 chr9 88953811 90260911 1307101 * c(GAS1RR, DAPK1, GAS1, C9orf170, LOC440173, LOC494127, ZCCHC6) 0.463 1 NA 0.901566082635553 247 0.3971906366759 4 4 0 -5.76500956370355 LTS-039 chr9 90260912 90499009 238098 * c(CTSL, CTSLP8, DAPK1, SPATA31E1, CTSL3P, LOC392364) 0.426673436139037 10 0.065713519664272 0.617726548974149 225 0.203871841843903 2 1 1 -6.81333579709579 LTS-039 chr9 90499010 90499494 485 * SPATA31E1 NA 0 NA 0.469 1 NA NA NA NA NA LTS-039 chr9 90499495 90747134 247640 * c(CDK20, SPATA31E1, SPATA31C1, SPATA31C2) 0.455515428480765 5 0.0531761224611197 0.407575566838 230 0.210610663828415 2 1 1 -7.08602398807427 LTS-039 chr9 90747135 90747464 330 * SPATA31C2 NA 0 NA 0.514 1 NA NA NA NA NA LTS-039 chr9 90747465 91793558 1046094 * c(MIR4289, SPIN1, NXNL2, S1PR3, C9orf47, LOC286238, SHC3, SPATA31C2) 0.379253848212907 14 0.121592930137162 0.644204904891218 516 0.264132223041016 3 2 1 -6.82262885530704 LTS-039 chr9 91793559 91934612 141054 * c(MIR3153, CKS2, SHC3, SECISBP2) 0.442545416698468 2 0.000707106781186548 1.44532830495736 40 0.694238161584337 8 4 4 -18.8735762347509 LTS-039 chr9 91934613 97061995 5127383 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, MIR4291, MIR4290, MIR3910-1, MIR3910-2, MIR4670, SEMA4D, SPTLC1, GADD45G, PTPDC1, ANKRD19P, MIRLET7DHG, FAM120AOS, LINC00475, ZNF169, ECM2, SUSD3, FAM120A, BICD2, MIR4290HG, IARS, LINC01501, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, C9orf129, NFIL3, NINJ1, ROR2, OMD, OGN, PHF2, DIRAS2, ASPN, AUH, NOL8, BARX1, IPPK, WNK2, SYK, SECISBP2, ZNF484, CARD19, NA NA NA NA NA NA NA NA NA LTS-039 FGD3) 0.432319048206937 79 0.0834418190313387 0.579360377140078 3259 0.266078045896272 2 1 1 -7.04921917648676 LTS-039 NA NA NA NA LTS-039 chr9 97061996 97200853 138858 * c(LOC100132077, ZNF169, NUTM2F, MFSD14B) NA 0 NA 0.354517762659827 126 0.269174810137759 1 NA NA -5.76457339631365 LTS-039 chr9 97200854 97203194 2341 * MFSD14B NA 0 NA 0.711 1 NA NA NA NA NA LTS-039 chr9 97203195 98703828 1500634 * c(LINC00476, MIR2278, MIR3074, LOC100507346, FANCC, FBP1, ERCC6L2, MIR23B, PTCH1, MFSD14B, C9orf3, FBP2) 0.412207552613437 8 0.0525205741998858 0.756874483027347 852 0.375243410868006 4 2 2 -6.97360909610102 LTS-039 chr9 98703829 99701290 997462 * c(LOC100132781, LINC00092, SLC35D2, ZNF782, LOC158434, LOC158435, AAED1, ZNF367, ZNF510, HABP4, HSD17B3, ERCC6L2, LOC441454, LOC441455, NUTM2G, CDC14B) 0.444289302718877 14 0.0400354238748032 0.565867892582573 960 0.30716180041271 2 1 1 -6.82729915476429 LTS-039 chr9 99701291 99702371 1081 * NUTM2G NA 0 NA 0.093 1 NA NA NA NA NA LTS-039 chr9 99702372 99704582 2211 * NUTM2G NA 0 NA 0.281102229781841 43 0.136687209108964 1 NA NA -5.76784709677105 LTS-039 chr9 99704583 99711147 6565 * MFSD14C NA 0 NA 1.496 1 NA NA NA NA NA LTS-039 chr9 99711148 99884384 173237 * c(CTSV, GAS2L1P2, MFSD14C) NA 0 NA 0.561913159156436 75 0.233601416137877 2 NA NA -5.77058996286543 LTS-039 chr9 99884385 99885729 1345 * character(0) NA 0 NA 0.241 1 NA NA NA NA NA LTS-039 chr9 99885730 99961909 76180 * character(0) NA 0 NA 0.28601750390226 54 0.185879348168299 1 NA NA -5.81832486946663 LTS-039 chr9 99961910 100380226 418317 * c(CCDC180, LOC100499484, TSTD2, TDRD7, LOC286359, LOC100499484-C9ORF174, TMOD1) 0.415664747629449 13 0.132169811130829 0.525372846358989 534 0.292018136812743 2 1 1 -6.74108779561413 LTS-039 chr9 100380227 100387950 7724 * TSTD2 NA 0 NA 0.908 1 NA NA NA NA NA LTS-039 chr9 100387951 101053107 665157 * c(ANP32B, TSTD2, FOXE1, NCBP1, TRMO, NANS, TBC1D2, HEMGN, CORO2A, XPA, GABBR2, TRIM14) 0.409369944150969 21 0.105913464227934 0.653542668531043 963 0.354610045211393 3 2 1 -6.83287210410124 LTS-039 chr9 101053108 101056043 2936 * GABBR2 NA 0 NA 0.325 1 NA NA NA NA NA LTS-039 chr9 101056044 101539873 483830 * c(ANKS6, GABBR2) 0.45822830303658 3 0.0571664237118258 0.431412153981776 230 0.135763164283076 2 1 1 -7.47936675768498 LTS-039 chr9 101539874 101540469 596 * ANKS6 NA 0 NA 0.785 1 NA NA NA NA NA LTS-039 chr9 101540470 101990369 449900 * c(SEC61B, COL15A1, ANKS6, TGFBR1, GALNT12, ALG2) 0.44159205221347 12 0.0484974226119286 0.651068427134652 569 0.251643416392794 2 1 1 -6.93594730985322 LTS-039 chr9 101990370 101992493 2124 * SEC61B NA 0 NA 0.396 1 NA NA NA NA NA LTS-039 chr9 101992494 104355546 2363053 * c(MSANTD3-TMEFF1, NAMA, SEC61B, GRIN3A, ALDOB, ERP44, INVS, MURC, STX17-AS1, MRPL50, TEX10, PLPPR1, STX17, PPP3R2, RNF20, BAAT, ZNF189, NR4A3, TMEM246, TMEFF1, MSANTD3) 0.433152160765835 22 0.052111186491729 0.505015795668391 1395 0.213264663959368 2 1 1 -6.81060051664485 LTS-039 chr9 104355547 104355549 3 * c(GRIN3A, PPP3R2) NA 0 NA 0.312 1 NA NA NA NA NA LTS-039 chr9 104355550 105968644 1613095 * c(GRIN3A, CYLC2, PPP3R2) 0.439531523194128 8 0.0381201109277354 0.363370794424811 215 0.355680630405239 2 1 1 -7.70116124582094 LTS-039 chr9 106857568 107266503 408936 * SMC2 0.433 1 NA 0.640895641195094 159 0.224142130377807 3 3 0 -5.81693465401975 LTS-039 chr9 107266504 107266547 44 * OR13F1 NA 0 NA 0.324 1 NA NA NA NA NA LTS-039 chr9 107266548 107457836 191289 * c(OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, OR13C9, OR13D1, OR13C2) 0.45569061492337 15 0.0328420462212695 0.355023834928658 200 0.186833651053094 2 1 1 -7.55148169983017 LTS-039 chr9 107457837 107509995 52159 * NIPSNAP3A NA 0 NA 1.058 1 NA NA NA NA NA LTS-039 chr9 107509996 107545235 35240 * c(ABCA1, NIPSNAP3A, NA, NIPSNAP3B) 0.456818776267551 5 0.0396837498228179 0.815731307365709 135 0.371497804711512 4 2 2 -6.98360942397122 LTS-039 chr9 107545236 107566877 21642 * c(ABCA1, NIPSNAP3B) 0.479068863315598 2 0.00636396103067893 0.568741686735981 122 0.167804574087469 2 1 1 -14.3257947610698 LTS-039 chr9 107566878 108006950 440073 * c(ABCA1, SLC44A1) 0.385 1 NA 0.52239965397875 196 0.150565933270588 2 2 0 -5.76736254637069 LTS-039 chr9 108006951 108366734 359784 * c(FKTN, SLC44A1, FSD1L) 0.186679107959564 9 0.242575990384686 0.550635871512918 554 0.333536034018022 2 2 0 -6.74285833755152 LTS-039 chr9 108366735 108380355 13621 * FKTN 0.476 1 NA 0.599165326461991 11 0.287001488751286 2 2 0 -5.7658666419468 LTS-039 chr9 108380356 109736917 1356562 * c(MIR548Q, FKTN, TMEM38B, ZNF462, TAL2) 0.434457595581381 4 0.0451838835574515 0.491884684194329 404 0.214670555001106 2 1 1 -6.83780473884819 LTS-039 chr9 109736918 111899760 2162843 * c(MIR548Q, ACTL7B, ACTL7A, TMEM245, FRRS1L, MIR32, FAM206A, ZNF462, RAD23B, IKBKAP, CTNNAL1, KLF4) 0.394047308951346 27 0.125825683245125 0.823213340717167 969 4.40143172962555 5 3 2 -6.74412228551463 LTS-039 chr9 111899761 113066807 1167047 * c(AKAP2, PALM2, FRRS1L, TXNDC8, C9orf152, PALM2-AKAP2, EPB41L4B, PTPN3, TXN) 0.417105267019938 21 0.0548387680039448 0.603914933160199 871 0.263420683032403 2 1 1 -6.93323041870205 LTS-039 chr9 113066808 114659225 1592418 * c(ZNF483, C9orf84, LPAR1, PTGR1, KIAA0368, TXNDC8, OR2K2, GNG10, MUSK, DNAJC25, DNAJC25-GNG10, LRRC37A5P, UGCG, SVEP1) 0.44372426457232 32 0.0496308855289435 0.506841417841581 1437 0.22214584190994 2 1 1 -6.81507317514358 LTS-039 chr9 114659226 114659403 178 * UGCG NA 0 NA 0.981 1 NA NA NA NA NA LTS-039 chr9 114659404 114825400 165997 * c(MIR3134, MIR4668, SUSD1, UGCG) 0.369537363937815 2 0.0509116882454314 0.90485572172428 139 0.372075263025423 3 2 1 -6.77502909541386 LTS-039 chr9 114825401 114840789 15389 * c(MIR3134, SUSD1) NA 0 NA 0.676 1 NA NA NA NA NA LTS-039 chr9 114840790 117074810 2234021 * c(FAM225B, MIR3134, KIF12, WDR31, ZNF618, SLC31A1, SLC31A2, RNF183, KIAA1958, ZNF883, ALAD, FKBP15, CDC26, C9orf43, AMBP, FAM225A, SNX30, POLE3, BSPRY, SLC46A2, INIP, RGS3, MIR455, SUSD1, ZFP37, HDHD3, HSDL2, COL27A1, PRPF4, PTBP3) 0.424554862074281 78 0.0824330402642419 0.603722637633496 2975 0.280141303418344 2 1 1 -7.00693411313539 LTS-039 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.063 1 NA NA NA NA NA LTS-039 chr9 117085363 117092646 7284 * c(ORM1, ORM2) NA 0 NA 0.330862023030069 60 0.207878183037689 1 NA NA -5.76474029038521 LTS-039 chr9 117092647 119094789 2002143 * c(LOC100505478, TMEM268, WHRN, TNC, ORM1, ORM2, DEC1, PAPPA, LINC00474, AKNA, TNFSF8, ATP6V1G1, TNFSF15) 0.442738231637722 27 0.0341265033898616 0.620943809356455 1015 0.253884825107557 2 1 1 -7.23367644677211 LTS-039 chr9 119094790 119159114 64325 * PAPPA NA 0 NA 0.60325808571772 56 0.211417964041565 2 NA NA -5.7785208978455 LTS-039 chr9 119159115 119160324 1210 * PAPPA 0 1 NA 0.833249694811069 25 0.613235536587153 4 4 0 -5.76441900660424 LTS-039 chr9 119160325 119626072 465748 * c(ASTN2-AS1, TRIM32, ASTN2, PAPPA) 0.294380130674622 12 0.100001931799523 0.840421102560865 297 0.519968939844438 4 3 1 -6.73726270256533 LTS-039 chr9 119626073 119737435 111363 * ASTN2 NA 0 NA 0.425 1 NA NA NA NA NA LTS-039 chr9 119737436 122285318 2547883 * c(SNORA70C, BRINP1, ASTN2, TLR4) 0.409849790414544 4 0.0544089453429612 0.468583796899551 271 0.220482055082417 2 1 1 -7.27246110895153 LTS-039 chr9 123007174 123364713 357540 * c(MEGF9, MIR147A, CDK5RAP2) 0 1 NA 0.75236889703358 275 0.356368513068754 3 3 0 -5.76974038937781 LTS-039 chr9 123364714 123550141 185428 * c(MEGF9, FBXW2) 0.491 1 NA 0.652149363674214 153 0.204107752920367 3 3 0 -5.78444259947855 LTS-039 chr9 123550142 123665298 115157 * c(LOC100288842, PSMD5-AS1, PHF19, FBXW2, PSMD5, TRAF1) 0.48 1 NA 0.763593774547555 259 0.313695557724617 3 3 0 -5.76794833348864 LTS-039 chr9 123665299 123939744 274446 * c(CNTRL, TRAF1, C5) 0.441976107180474 5 0.0719527622819305 0.572368744784976 547 0.239418885028983 2 1 1 -6.76404177316741 LTS-039 chr9 123939745 124218279 278535 * c(CNTRL, STOM, GGTA1P, GSN, RAB14) 0.471333073843453 11 0.0293307161366869 0.977848061818838 414 0.443670545865697 4 2 2 -7.71503268847943 LTS-039 chr9 124218280 124222365 4086 * GGTA1P NA 0 NA 0.464 1 NA NA NA NA NA LTS-039 chr9 124222366 125239337 1016972 * c(MIR4478, DAB2IP, TTLL11, MORN5, LHX6, GGTA1P, OR1J1, NDUFA8, PTGS1, MRRF, RBM18) 0.428969645196594 10 0.111077600502231 0.582983754845274 766 0.280242724474513 2 1 1 -6.80076813621806 LTS-039 chr9 125239338 125563361 324024 * c(OR1L8, OR1N2, OR1N1, OR1Q1, OR1L4, OR1J4, OR1L3, OR1L1, OR1J2, OR1J1, OR1B1, OR1L6, OR5C1, OR1K1) 0.432084645885553 20 0.05934863542084 0.336280666108618 383 0.151075653934582 2 1 1 -8.12732858469201 LTS-039 chr9 125563362 125563367 6 * character(0) NA 0 NA 0.478 1 NA NA NA NA NA LTS-039 chr9 125563368 125660130 96763 * c(PDCL, RC3H2, SNORD90) 0.488 1 NA 0.626275573105798 323 0.407422093159539 3 3 0 -5.77006712991556 LTS-039 chr9 125660131 125679542 19412 * c(ZBTB6, RC3H2) NA 0 NA 1.09667170091998 130 0.380228894828801 5 NA NA -5.76445120570089 LTS-039 chr9 125679543 130206305 4526763 * c(LOC100129034, MIR181A2HG, RABEPK, NEK6, RPL35, OLFML2A, ZBTB43, ANGPTL2, RABGAP1, NR5A1, GAPVD1, NR6A1, GOLGA1, GPR21, CRB2, SCAI, SLC2A8, HSPA5, ADGRD2, LMX1B, WDR38, ZBTB34, MIR181A2, MIR181B2, PBX3, STRBP, PPP6C, PSMB7, ZBTB26, DENND1A, NRON, MIR601, ZNF79, MAPKAP1, MIR600HG, ARPC5L, GARNL3, MVB12B, LHX2, RALGPS1) 0.429302115800986 47 0.0787374529305276 0.614342408022903 3815 0.269193629392849 2 1 1 -7.44322833092483 LTS-039 chr9 130206306 130217972 11667 * c(SNORA65, RPL12, ZNF79, LRSAM1) 0.485 1 NA 1.11024694272327 82 0.532516974720009 5 5 0 -5.76444016843425 LTS-039 chr9 130217973 130219551 1579 * LRSAM1 NA 0 NA 0.527 1 NA NA NA NA NA LTS-039 chr9 130219552 130280302 60751 * c(FAM129B, LRSAM1) NA 0 NA 0.58834726302036 195 0.228990697681448 2 NA NA -5.77176982947022 LTS-039 chr9 130280303 130285950 5648 * FAM129B NA 0 NA 0.798 1 NA NA NA NA NA LTS-039 chr9 130285951 130678842 392892 * c(SH2D3C, MIR3911, MIR3960, MIR4672, CDK9, PTRH1, TTC16, ENG, AK1, FPGS, ST6GALNAC4, TOR2A, CFAP157, ST6GALNAC6, FAM129B, STXBP1) 0.28569292907948 4 0.183834164398242 0.815337958105859 957 0.338031546924483 4 3 1 -6.75202744692489 LTS-039 chr9 130678843 130683158 4316 * ST6GALNAC4 NA 0 NA 1.63 1 NA NA NA NA NA LTS-039 chr9 130683159 131317777 634619 * c(SLC25A25-AS1, MIR3154, MIR219B, SLC27A4, SLC25A25, PIP5KL1, DNM1, NAIF1, CIZ1, TRUB2, GLE1, GOLGA2, SWI5, PTGES2-AS1, LCN2, FAM102A, MIR199B, MIR219A2, ODF2, COQ4, CERCAM, SPTAN1, C9orf16, PTGES2, URM1, DPM2) 0.340929048063396 6 0.0774252327517758 1.00066967322564 1599 0.440997160395699 6 4 2 -6.8496248301632 LTS-039 chr9 131317778 131328955 11178 * SPTAN1 NA 0 NA 0.724 1 NA NA NA NA NA LTS-039 chr9 131328956 131403181 74226 * c(SPTAN1, WDR34) NA 0 NA 0.790324046289206 359 0.266456093218556 3 NA NA -5.7713724492163 LTS-039 chr9 131403182 131418821 15640 * WDR34 NA 0 NA 1.901 1 NA NA NA NA NA LTS-039 chr9 131418822 131458344 39523 * c(SET, WDR34) NA 0 NA 1.83420853512836 69 0.898296333186627 9 NA NA -5.76442453227572 LTS-039 chr9 131458345 131458620 276 * SET NA 0 NA 0.93 1 NA NA NA NA NA LTS-039 chr9 131458621 131870282 411662 * c(LOC100506100, ZER1, CRAT, ENDOG, DOLK, NUP188, PHYHD1, PKN3, SPOUT1, TBC1D13, LRRC8A, SH3GLB2, DOLPP1, SET, ZDHHC12, MIGA2, KYAT1) 0.426375314641096 8 0.0589739652001506 0.589225522757348 1382 0.250071619904937 2 1 1 -6.77903103083352 LTS-039 chr9 131870283 131870347 65 * CRAT NA 0 NA 0.731 1 NA NA NA NA NA LTS-039 chr9 131870348 132597527 727180 * c(LINC00963, CRAT, ASB6, TOR1A, TOR1B, NTMT1, C9orf50, IER5L, C9orf106, PRRX2, C9orf78, PTPA, PTGES) 0.446 1 NA 0.87879598401226 600 1.02586190606592 4 4 0 -5.76449849594529 LTS-039 chr9 132597528 132643953 46426 * c(USP20, C9orf78) NA 0 NA 0.515391180682592 146 0.144680824580927 2 NA NA -5.76556261856213 LTS-039 chr9 132643954 132842094 198141 * c(USP20, FNBP1, GPR107) 0.387 1 NA 0.870690695035124 231 0.332242286965791 4 4 0 -5.76502346663835 LTS-039 chr9 132842095 133558034 715940 * c(LOC100272217, NCS1, ASS1, GPR107, PRDM12, FUBP3) 0.392486093855553 13 0.123451848808995 0.594694158763803 866 0.248594693737407 2 1 1 -6.87848431763955 LTS-039 chr9 133558035 133558039 5 * PRDM12 NA 0 NA 0.762 1 NA NA NA NA NA LTS-039 chr9 133558040 133729482 171443 * c(EXOSC2, ABL1, PRDM12) NA 0 NA 0.878886585535432 106 0.309235318794502 4 NA NA -5.76463616788915 LTS-039 chr9 133729483 134497405 767923 * c(LAMC3, POMT1, ABL1, SNORD62A, FAM78A, RAPGEF1, QRFP, NUP214, AIF1L, UCK1, PRRC2B, PLPP7, FIBCD1) 0.43925012483029 38 0.0834919268505503 0.532088296666349 1609 0.221430981151427 2 1 1 -6.73937973232166 LTS-039 chr9 134497406 134501262 3857 * RAPGEF1 NA 0 NA 1.881 1 NA NA NA NA NA LTS-039 chr9 134501263 134526403 25141 * RAPGEF1 NA 0 NA 1.1546535595478 53 0.296584101348528 5 NA NA -5.76535156726807 LTS-039 chr9 134526404 134584946 58543 * RAPGEF1 NA 0 NA 0.504 1 NA NA NA NA NA LTS-039 chr9 134584947 136210406 1625460 * c(CEL, CELP, SPACA9, AK8, SETX, GBGT1, ABO, RAPGEF1, OBP2B, CFAP77, BARHL1, RALGDS, DDX31, MED22, SURF6, TSC1, TTF1, GFI1B, NTNG2, GTF3C5, GTF3C4, MED27) 0.437467300550605 62 0.0705253235270377 0.620752547420085 2028 0.505834090346525 2 1 1 -6.83057636426241 LTS-039 chr9 136210407 136255414 45008 * c(STKLD1, SNORD36C, SNORD36B, SNORD36A, SNORD24, RPL7A, SURF1, SURF2, SURF4, MED22) 0.444076289512648 15 0.0617289003859387 0.827609485049239 274 0.333669740054338 4 2 2 -6.76244429031072 LTS-039 chr9 136255415 136256441 1027 * STKLD1 NA 0 NA 0.597 1 NA NA NA NA NA LTS-039 chr9 136256442 138236329 1979888 * c(RNU6ATAC, MIR3689A, MIR3689B, MIR3689D1, MIR3689F, MIR4669, MIR3689C, MIR3689D2, MIR3689E, LOC101448202, OLFM1, WDR5, ADAMTS13, CACFD1, SLC2A6, COL5A1, DBH-AS1, C9orf62, DBH, STKLD1, SARDH, FCN1, FCN2, LINC00094, TMEM8C, LOC401557, REXO4, RXRA, FAM163B, VAV2, BRD3, ADAMTSL2) 0.432894878963601 103 0.0590550808141012 0.561819356900362 2114 0.262341685762765 2 1 1 -6.78908179751812 LTS-039 chr9 138236330 138376205 139876 * c(PPP1R26-AS1, C9orf62, PPP1R26) NA 0 NA 0.849 1 NA NA NA NA NA LTS-039 chr9 138376206 138396539 20334 * c(C9orf116, MRPS2, PPP1R26) 0.479905582719444 4 0.0225166604983954 0.810481954396754 156 0.346895213701008 4 2 2 -8.74560406113089 LTS-039 chr9 138396540 138396558 19 * character(0) NA 0 NA 0.655 1 NA NA NA NA NA LTS-039 chr9 138396559 138903929 507371 * c(LINC01502, UBAC1, NACC2, CAMSAP1, OBP2A, GLT6D1, LCN9, LCN1, SOHLH1, PAEP, KCNT1) 0.434306497287813 14 0.0514405663667486 0.508300550531406 801 1.75864528201381 2 1 1 -6.73617068222069 LTS-039 chr9 138903930 139010814 106885 * c(NACC2, C9orf69) 0.47 1 NA 0.93794930127204 90 0.346490218888309 4 4 0 -5.76577447422004 LTS-039 chr9 139010815 139085031 74217 * character(0) NA 0 NA 0.401 1 NA NA NA NA NA LTS-039 chr9 139085032 139115909 30878 * c(QSOX2, LHX3) 0.426623371946673 6 0.0296878201737121 0.413543829751541 184 0.151075248751151 2 1 1 -6.79443825439687 LTS-039 chr9 139115910 139642999 527090 * c(LOC100128593, MIR4673, MIR4674, AGPAT2, SDCCAG3, FAM69B, C9orf163, LCN6, QSOX2, PMPCA, GPSM1, DKFZP434A062, MIR126, LCN10, NOTCH1, EGFL7, INPP5E, CARD9, SNAPC4, SNORA17A, SNORA17B, DNLZ, SNHG7, SEC16A) 0.398769750551014 29 0.139927893112617 0.62997739285455 1541 0.297626915129758 3 2 1 -6.80845870708314 LTS-039 chr9 139643000 139650060 7061 * c(LOC100128593, LCN8) 0.345 1 NA 0.659818956950646 19 0.242529795601254 3 3 0 -5.76481586666174 LTS-039 chr9 139650061 139651069 1009 * LCN8 NA 0 NA 0.550060400183412 20 0.12760295121154 2 NA NA -5.76445739455682 LTS-039 chr9 139651070 140009070 358001 * c(CCDC183-AS1, MAN1B1-AS1, MIR4292, MIR4479, MAN1B1, LCN8, MAMDC4, ABCA2, FUT7, LCN12, C9orf142, PHPT1, DPP7, LCN15, C9orf172, LCNL1, C9orf139, FBXW5, RABL6, NPDC1, PTGDS, TRAF2, C8G, CCDC183, TMEM141, EDF1, SAPCD2, CLIC3, UAP1L1, ENTPD2) 0.308628103533843 65 0.0619102677267673 1.03731025672825 1863 0.526262523782572 4 3 1 -6.76982999560363 LTS-039 chr9 140009071 140074926 65856 * c(MIR3621, GRIN1, ANAPC2, DPP7, LRRC26) 0.361443001762976 4 0.0488876262463213 0.645919351305587 246 0.246897052341563 3 2 1 -6.76251841994388 LTS-039 chr9 140074927 140177085 102159 * c(STPG3-AS1, TUBB4B, SLC34A3, NELFB, NDOR1, TPRN, ANAPC2, CYSRT1, FAM166A, STPG3, TOR4A, RNF224, RNF208, SSNA1, TMEM203) 0.381899602687525 15 0.0479590102761375 1.0001575933321 640 0.388309399055767 3 2 1 -6.80999023401247 LTS-039 chr9 140177086 140194135 17050 * c(NRARP, TOR4A) NA 0 NA 4.752 1 NA NA NA NA NA LTS-039 chr9 140194136 140204207 10072 * c(NRARP, EXD3) NA 0 NA 1.81767781396784 61 0.828590738886397 9 NA NA -5.76441164070542 LTS-039 chr9 140204208 140218111 13904 * EXD3 NA 0 NA 0.938 1 NA NA NA NA NA LTS-039 chr9 140218112 140605289 387178 * c(NOXA1, ZMYND19, NSMF, PNPLA7, ENTPD8, EXD3, MRPL41, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.370756575078893 18 0.0868402673081088 0.784359028413744 764 0.310871250783264 3 2 1 -6.75596360154507 LTS-039 chr9 140605290 140605355 66 * EHMT1 0.396 1 NA 0.387 1 NA NA NA NA NA LTS-039 chr9 140605356 141070283 464928 * c(EHMT1-IT1, TUBBP5, MIR602, CACNA1B, EHMT1) 0.361764693421717 3 0.117410959170485 0.53703055845958 529 0.230225663138409 2 1 1 -6.93373324438737 LTS-039 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.431398115668594 5 0.10139526616169 2 NA NA -5.7681079979164 LTS-039 chr10 94832 459940 365109 * c(ZMYND11, DIP2C, TUBB8) 0.347 1 NA 0.992019507440637 379 0.41819157557576 5 5 0 -5.77196558978008 LTS-039 chr10 459941 1095102 635162 * c(MIR5699, DIP2C, LARP4B, GTPBP4, IDI1, PRR26, IDI2-AS1, IDI2) 0.324530545658955 6 0.0410073164203658 0.908292317331149 529 0.360233507115267 4 3 1 -6.98293768855836 LTS-039 chr10 1095103 1118022 22920 * c(WDR37, IDI1) NA 0 NA 0.449 1 NA NA NA NA NA LTS-039 chr10 1118023 3199706 2081684 * c(PITRM1-AS1, ADARB2, PITRM1, WDR37, LINC00700, LINC00200, LINC00701, PFKP, ADARB2-AS1) 0.394501900150825 27 0.0518565575805275 0.647879950711641 577 0.27691083052154 3 2 1 -6.9910825588639 LTS-039 chr10 3199707 3827442 627736 * c(PITRM1, KLF6) 0.345558508582566 5 0.0417049157773997 1.02621022711622 204 0.755694456804348 6 4 2 -6.78897646605842 LTS-039 chr10 4867081 5436214 569134 * c(AKR1C4, UCN3, AKR1C1, AKR1C2, AKR1C8P, AKR1C6P, TUBAL3, AKR1E2, AKR1C3) 0.363170258325718 40 0.0821021252730949 0.562929509644334 540 0.406026061346153 3 2 1 -6.84987726546383 LTS-039 chr10 5436215 5436260 46 * TUBAL3 0.491 1 NA 1.382 1 NA NA NA NA NA LTS-039 chr10 5436261 5567914 131654 * c(NET1, CALML5, TUBAL3, CALML3) 0.356973084262552 6 0.0733777895551508 1.28104877605356 188 0.45213904449133 6 4 2 -6.73371097045243 LTS-039 chr10 5567915 5567917 3 * CALML3 NA 0 NA 0.657 1 NA NA NA NA NA LTS-039 chr10 5567918 6498723 930806 * c(MIR3155A, MIR3155B, GDI2, IL2RA, IL15RA, LOC399715, PFKFB3, ANKRD16, FAM208B, PRKCQ, ASB13, CALML3, FBXO18, RBM17) 0.362707516479213 24 0.0879223554035613 0.78311871140306 1054 0.336787111579697 3 2 1 -6.7838107732091 LTS-039 chr10 6498724 6498741 18 * PRKCQ NA 0 NA 0.515 1 NA NA NA NA NA LTS-039 chr10 6498742 7786227 1287486 * c(LINC00707, ITIH2, PRKCQ-AS1, PRKCQ, SFMBT2, ITIH5) 0.365208542186336 22 0.0707763993242006 0.513501005698705 613 0.196534619337973 2 1 1 -7.22900428579798 LTS-039 chr10 7786228 7786738 511 * ITIH2 NA 0 NA 0.698 1 NA NA NA NA NA LTS-039 chr10 7786739 13336672 5549934 * c(MIR4480, OPTN, CELF2, NUDT5, SFTA1P, PROSER2-AS1, UCMA, KIN, LINC00710, PROSER2, UPF2, GATA3, NA, ITIH2, GATA3-AS1, CELF2-AS2, ATP5C1, PHYH, SEC61A2, MCM10, DHTKD1, CAMK1D, ECHDC3, CCDC3, TAF3, CDC123, USP6NL) 0.349953011985822 57 0.0956630731207044 0.764461637035027 2139 0.39200962663632 3 2 1 -6.87301158933114 LTS-039 chr10 13336673 13337403 731 * PHYH NA 0 NA 0.859 1 NA NA NA NA NA LTS-039 chr10 13337404 15172304 1834901 * c(MIR1265, RPP38, C10orf111, BEND7, SEPHS1, ACBD7, CDNF, HSPA14, PHYH, OLAH, FRMD4A, DCLRE1C, MEIG1, SUV39H2, FAM107B, PRPF18, NMT2) 0.360522320201256 19 0.101496780693912 0.91672427955209 1232 0.608316747838651 3 2 1 -6.92531770644934 LTS-039 chr10 15172305 15174780 2476 * NMT2 NA 0 NA 0.632 1 NA NA NA NA NA LTS-039 chr10 15174781 17813397 2638617 * c(ST8SIA6-AS1, PPIAP30, TRDMT1, FAM171A1, ST8SIA6, C1QL3, RSU1, TMEM236, VIM, FAM188A, STAM, CUBN, ITGA8, HACD1, PTER, NMT2) 0.39406522227304 34 0.0735817296938685 0.605779652885066 1539 0.27614291363741 2 1 1 -7.2204705591556 LTS-039 chr10 17813398 17842447 29050 * TMEM236 NA 0 NA 0.109 1 NA NA NA NA NA LTS-039 chr10 17842448 17949683 107236 * c(MRC1, NA, TMEM236) NA 0 NA 0.307435287342752 53 0.165146438513963 1 NA NA -5.80436726393635 LTS-039 chr10 17949684 17952627 2944 * c(MRC1, NA, TMEM236) NA 0 NA 0.01 1 NA NA NA NA NA LTS-039 chr10 17952628 18196475 243848 * c(MRC1, NA, TMEM236) NA 0 NA 0.116815721594424 97 0.088236273914781 0 NA NA -7.65457671169343 LTS-039 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 1.084 1 NA NA NA NA NA LTS-039 chr10 18198201 18830287 632087 * c(SLC39A12-AS1, SLC39A12, MRC1, CACNB2) 0.351145527364698 9 0.0600356375645148 0.600972185303683 247 0.291226582553347 3 2 1 -6.92311938333915 LTS-039 chr10 18830288 18830318 31 * CACNB2 0.41 1 NA 2.116 1 NA NA NA NA NA LTS-039 chr10 18830319 18970585 140267 * c(NSUN6, ARL5B, CACNB2) 0.298 1 NA 0.923847765161001 246 0.389399245791765 4 4 0 -5.76510541012297 LTS-039 chr10 18970586 19337857 367272 * character(0) NA 0 NA 0.723 1 NA NA NA NA NA LTS-039 chr10 19337858 21124566 1786709 * c(MIR4675, NEBL, PLXDC2) 0.336716966855918 16 0.11501101396533 0.602472740505885 511 0.301578858389955 3 2 1 -7.09462137324578 LTS-039 chr10 21124567 21129592 5026 * NEBL NA 0 NA 0.773 1 NA NA NA NA NA LTS-039 chr10 21129593 21785844 656252 * c(NEBL-AS1, MIR1915, NEBL, C10orf113, CASC10) 0.320906223281897 2 0.0268700576850888 0.878210882852382 199 0.75889363534625 7 5 2 -6.97367004021879 LTS-039 chr10 21785845 21785922 78 * CASC10 NA 0 NA 1.378 1 NA NA NA NA NA LTS-039 chr10 21785923 21823698 37776 * c(SKIDA1, CASC10, MLLT10) NA 0 NA 1.90685308795794 131 0.793401367534662 10 NA NA -5.76445391966893 LTS-039 chr10 21823699 21827724 4026 * MLLT10 NA 0 NA 1.107 1 NA NA NA NA NA LTS-039 chr10 21827725 22600082 772358 * c(LOC100130992, EBLN1, DNAJC1, MLLT10) 0.384 1 NA 0.787523203423604 290 0.414044111463886 3 3 0 -5.79232944360253 LTS-039 chr10 22600083 22604873 4791 * character(0) NA 0 NA 3.384 1 NA NA NA NA NA LTS-039 chr10 22604874 22618085 13212 * c(COMMD3-BMI1, COMMD3, BMI1) NA 0 NA 1.93523238863266 74 1.30433718721952 10 NA NA -5.76441201682305 LTS-039 chr10 22618086 22700010 81925 * c(COMMD3-BMI1, BMI1, SPAG6) 0.347 1 NA 0.891560513138331 107 0.312543236860796 4 4 0 -5.76441015069958 LTS-039 chr10 22700011 23633798 933788 * c(LOC100499489, ARMC3, MSRB2, PTF1A, C10orf67, PIP4K2A, SPAG6) 0.399694825208489 5 0.0531949245699249 0.613493379310175 442 0.355913906496193 3 2 1 -6.99637770992976 LTS-039 chr10 23633799 23682433 48635 * character(0) NA 0 NA 1.991 1 NA NA NA NA NA LTS-039 chr10 23682434 24498311 815878 * c(OTUD1, KIAA1217) NA 0 NA 1.4356667561824 79 0.980303664476561 7 NA NA -5.76441173917113 LTS-039 chr10 24498312 24508523 10212 * KIAA1217 NA 0 NA 0.864 1 NA NA NA NA NA LTS-039 chr10 24508524 25350122 841599 * c(ENKUR, KIAA1217, PRTFDC1, ARHGAP21, MIR603, THNSL1) 0.326141976677677 11 0.135297718854653 0.873843377271981 720 0.467246318209477 4 3 1 -6.76063469910765 LTS-039 chr10 25350123 25463960 113838 * c(GPR158-AS1, ENKUR) NA 0 NA 0.616 1 NA NA NA NA NA LTS-039 chr10 25463961 26856780 1392820 * c(GPR158-AS1, GAD2, MYO3A, APBB1IP, GPR158) 0.389441799770502 24 0.107190065514149 0.526256015925887 659 0.252531088624861 2 1 1 -6.82157018333414 LTS-039 chr10 26856781 26986714 129934 * c(PDSS1, LINC00264, LINC00202-2) NA 0 NA 1.118 1 NA NA NA NA NA LTS-039 chr10 26986715 27442130 455416 * c(ABI1, YME1L1, ANKRD26, PDSS1, LINC00202-1) 0.378428886306875 2 0.0452548339959391 0.806806459510076 520 0.406938752884728 3 2 1 -6.77469268119994 LTS-039 chr10 27442131 27448756 6626 * c(YME1L1, MASTL) NA 0 NA 1.67316436462195 39 0.629843041090601 8 NA NA -5.76442330626658 LTS-039 chr10 27448757 27449977 1221 * MASTL NA 0 NA 0.952 1 NA NA NA NA NA LTS-039 chr10 27449978 29813006 2363029 * c(LINC00837, MIR5586, MPP7, WAC-AS1, RAB18, BAMBI, MKX, PTCHD3, LRRC37A6P, PTCHD3P1, WAC, ARMC4, SVIL, LYZL1, MASTL, ACBD5) 0.349189510284532 39 0.0744597546378495 0.73035565872412 1171 0.375790395831102 3 2 1 -6.79173333922238 LTS-039 chr10 29813007 29813431 425 * SVIL NA 0 NA 1.257 1 NA NA NA NA NA LTS-039 chr10 29813432 30306531 493100 * c(MIR938, KIAA1462, SVIL, MIR604) 0.290476971378281 5 0.160163978472065 1.35749306886166 190 0.548171212788174 7 5 2 -6.7457259176875 LTS-039 chr10 30306532 30306651 120 * KIAA1462 NA 0 NA 0.959 1 NA NA NA NA NA LTS-039 chr10 30306652 30750806 444155 * c(MAP3K8, MTPAP, KIAA1462) NA 0 NA 0.861258875864341 257 0.803465846649077 4 NA NA -5.76490878102773 LTS-039 chr10 30750807 30900755 149949 * LYZL2 NA 0 NA 0.246 1 NA NA NA NA NA LTS-039 chr10 30900756 31166026 265271 * c(LYZL2, ZNF438) 0.396786818426615 3 0.0428835632847831 0.433382359285118 142 0.315058836604253 2 1 1 -7.15167747551187 LTS-039 chr10 31166027 31608119 442093 * c(ZNF438, ZEB1-AS1, ZEB1) NA 0 NA 1.516 1 NA NA NA NA NA LTS-039 chr10 31608120 36810786 5202667 * c(LINC00838, CREM, GJD4, CCNY, NA, ITGB1, KIF5B, PARD3, ZEB1, CCDC7, EPC1, FZD8, CUL2, NRP1, ARHGAP12) 0.308197727626065 50 0.0544167178693595 0.988376742223389 1831 0.552483437264711 4 3 1 -6.86227007554941 LTS-039 chr10 36810787 36810823 37 * character(0) NA 0 NA 0.557 1 NA NA NA NA NA LTS-039 chr10 36810824 36813124 2301 * character(0) 0.377076325089862 2 0.0176776695296637 0.445523550170099 54 0.209309102738434 3 2 1 -6.80699435254244 LTS-039 chr10 36813125 38740382 1927258 * c(LOC100129055, MTRNR2L7, ZNF33BP1, HSD17B7P2, ZNF25, SEPT7P9, LINC00999, ZNF248, ZNF33A, ZNF37A, ANKRD30A) 0.262959096715197 12 0.107384998387987 0.820335182995702 624 0.370307455762961 4 3 1 -6.85282865792895 LTS-039 chr10 38740383 38740384 2 * LINC00999 NA 0 NA 0.829 1 NA NA NA NA NA LTS-039 chr10 42379879 45427549 3047671 * c(ZNF37BP, C10orf142, LINC00840, MIR5100, HNRNPA3P1, TMEM72-AS1, ZNF485, RASGEF1A, LINC00841, HNRNPF, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF32, ZNF33B, ZNF239, LINC00839, BMS1) 0.272328119398934 46 0.0710703434620008 0.918198414263455 1140 0.516349063296972 4 3 1 -6.81358916664995 LTS-039 chr10 45427550 45429013 1464 * c(TMEM72-AS1, TMEM72) NA 0 NA 1.854 1 NA NA NA NA NA LTS-039 chr10 45429014 45500752 71739 * c(C10orf10, C10orf25, TMEM72-AS1, TMEM72, ZNF22, RASSF4) 0.301656597167797 12 0.104154132579237 1.93770057570215 309 0.810907948383984 11 8 3 -6.74050811469142 LTS-039 chr10 45500753 45611370 110618 * c(RSU1P2, ZNF22) NA 0 NA 1.12 1 NA NA NA NA NA LTS-039 chr10 45611371 48438404 2827034 * c(RSU1P2, MIR3156-1, ZNF488, AGAP4, CTSLP2, MARCH8, ALOX5, NA, FAM21C, PTPN20, GDF2, GDF10, ANKRD30BP3, GLUD1P7, FAM35BP, FAM35DP, NPY4R, NA, RBP3, LINC00842, NA, NA, HNRNPA1P33, OR13A1, SYT15, ZFAND4, GPRIN2) 0.332648266215059 60 0.0666239637245705 0.799860986515313 1061 0.432956331074594 4 3 1 -7.00007905775137 LTS-039 chr10 48438405 48739488 301084 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.328609671715041 39 0.314572419352911 1 NA NA -5.77187180625324 LTS-039 chr10 49364631 50311310 946680 * c(MIR4294, FRMPD2, VSTM4, LRRC18, NA, MAPK8, WDFY4, ARHGAP22, FRMPD2B) 0.278755857751964 24 0.0995350058587648 0.9586617593728 936 0.425619162892312 4 3 1 -6.77075423861486 LTS-039 chr10 50311311 50311409 99 * c(VSTM4, NA) NA 0 NA 0.855 1 NA NA NA NA NA LTS-039 chr10 50311410 51124108 812699 * c(FAM170B-AS1, NA, CHAT, C10orf71, FAM170B, C10orf128, VSTM4, ERCC6, C10orf53, NA, OGDHL, DRGX, SLC18A3, PARG) 0.266588538192299 41 0.100447692976943 0.780078532013661 1042 0.400867019951744 4 3 1 -6.84334245847309 LTS-039 chr10 51124109 51362782 238674 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.117 1 NA NA NA NA NA LTS-039 chr10 51362783 51540256 177474 * c(NA, AGAP7P, NA, PARGP1, PARG) NA 0 NA 0.4513056636374 39 0.440154096743279 2 NA NA -5.7788379951545 LTS-039 chr10 51540257 51540364 108 * c(NA, PARG) NA 0 NA 1.356 1 NA NA NA NA NA LTS-039 chr10 51540365 51623927 83563 * c(TIMM23, MSMB, NA, NCOA4, PARG) 0.379398191374782 6 0.0466193808052688 1.31018067495154 184 1.04053141954855 8 5 3 -6.74285582221276 LTS-039 chr10 51623928 52065406 441479 * c(SGMS1, NA, FAM21A, AGAP6, NA, ASAH2, PARG) 0.479465661062838 4 0.0292503561231882 0.667449597870734 88 0.490946284014737 2 1 1 -8.11656319930992 LTS-039 chr10 52065407 52569887 504481 * c(SGMS1, A1CF, ASAH2B) 0.275698532902271 7 0.0452653551952526 1.16249772173966 136 0.69595829201654 8 6 2 -6.79959169882366 LTS-039 chr10 52569888 52570759 872 * A1CF NA 0 NA 0.788 1 NA NA NA NA NA LTS-039 chr10 52570760 59986974 7416215 * c(MTRNR2L5, MIR3924, PRKG1-AS1, ZWINT, DKK1, CSTF2T, IPMK, A1CF, MBL2, PRKG1, PCDH15, MIR605) 0.311191643115891 21 0.0927622408813701 0.744525780387665 1104 0.379747876728461 3 2 1 -7.03745817971027 LTS-039 chr10 59986975 59997543 10569 * IPMK NA 0 NA 1.297 1 NA NA NA NA NA LTS-039 chr10 59997544 60157698 160155 * c(IPMK, CISD1, TFAM, UBE2D1) 0.228686124427028 10 0.0613481866072666 1.31334006809787 252 1.37260916176432 10 8 2 -6.74276424027636 LTS-039 chr10 60157699 61894185 1736487 * c(MRLN, SLC16A9, FAM13C, LINC01553, ANK3, TFAM, FAM133CP, BICC1, CCDC6, PHYHIPL) 0.250121755842604 24 0.104546839582393 0.961782564587826 1027 0.511069602077933 5 4 1 -6.78012369388097 LTS-039 chr10 61894186 61896982 2797 * ANK3 NA 0 NA 4.25 1 NA NA NA NA NA LTS-039 chr10 61896983 61926727 29745 * ANK3 NA 0 NA 2.00859643353849 53 1.19969384701274 10 NA NA -5.7644137645459 LTS-039 chr10 61926728 61932000 5273 * ANK3 NA 0 NA 1.131 1 NA NA NA NA NA LTS-039 chr10 61932001 63526521 1594521 * c(C10orf107, TMEM26, ANK3, CDK1, RHOBTB1) 0.333058851808414 6 0.0424719515288227 0.930861132397842 471 0.463956215777478 4 3 1 -7.13355165855571 LTS-039 chr10 63526522 63661080 134559 * ARID5B NA 0 NA 3.875 1 NA NA NA NA NA LTS-039 chr10 63661081 63853241 192161 * c(MIR548AV, ARID5B) NA 0 NA 1.86712042091717 124 0.63315155071978 9 NA NA -5.76486840451856 LTS-039 chr10 63853242 63856671 3430 * ARID5B 0.292 1 NA 3.34643391612761 68 1.0349979105941 18 18 0 -5.76441100079277 LTS-039 chr10 63856672 63942883 86212 * c(RTKN2, ARID5B) NA 0 NA 1.729 1 NA NA NA NA NA LTS-039 chr10 63942884 65384870 1441987 * c(MIR1296, EGR2, RTKN2, REEP3, JMJD1C, ZNF365, NRBF2, ADO, JMJD1C-AS1) 0.276135774352416 4 0.0393361580906592 1.04550783164969 988 0.450541776102034 4 3 1 -7.01194608362648 LTS-039 chr10 65928619 69597950 3669332 * c(CTNNA3, ANXA2P3, LRRTM3, DNAJC12) NA 0 NA 0.632553184993036 231 0.225102718088758 3 NA NA -6.30924923082614 LTS-039 chr10 69597951 69644369 46419 * character(0) NA 0 NA 1.296 1 NA NA NA NA NA LTS-039 chr10 69644370 70451799 807430 * c(DNA2, ATOH7, SIRT1, HERC4, HNRNPH3, RUFY2, PBLD, TET1, SLC25A16, MYPN) 0.294167332739832 13 0.104755943470085 0.956239021381078 1171 0.679073031714822 4 3 1 -6.73878145063239 LTS-039 chr10 70451800 71266935 815136 * c(STOX1, TSPAN15, KIF1BP, HK1, SRGN, CCAR1, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, DDX21, VPS26A) 0.275700412300234 24 0.0697546424614702 1.15697381552883 1182 0.547392257337989 5 4 1 -6.83845525637589 LTS-039 chr10 71266936 71393310 126375 * c(C10orf35, TSPAN15, NEUROG3) 0.30432401226643 4 0.0439924235901289 0.772694103760368 77 0.299057022203208 4 3 1 -6.76452974779483 LTS-039 chr10 71393311 71561690 168380 * c(COL13A1, C10orf35) NA 0 NA 1.485 1 NA NA NA NA NA LTS-039 chr10 71561691 72043471 481781 * c(COL13A1, TYSND1, PPA1, H2AFY2, SAR1A, NPFFR1, AIFM2) 0.254020046153915 16 0.0753467263168525 1.41863559112281 663 0.74084458937992 9 7 2 -6.76505848265759 LTS-039 chr10 72043472 72058728 15257 * LRRC20 NA 0 NA 0.938 1 NA NA NA NA NA LTS-039 chr10 72058729 73467273 1408545 * c(ADAMTS14, EIF4EBP2, UNC5B, TBATA, PALD1, NODAL, PCBD1, LRRC20, SLC29A3, PRF1, CDH23, UNC5B-AS1, SGPL1) 0.286736826373126 36 0.0895673330118584 1.06128991780305 1325 0.606853485751532 4 3 1 -6.81053466218098 LTS-039 chr10 73467274 73468830 1557 * CDH23 NA 0 NA 3.36 1 NA NA NA NA NA LTS-039 chr10 73468831 73507502 38672 * c(C10orf105, CDH23, C10orf54) 0.28206003123249 2 0.0190918830920368 1.47603978814404 180 0.557780334580685 15 11 4 -6.77034180728398 LTS-039 chr10 73507503 73973127 465625 * c(ANAPC16, ASCC1, PSAP, CDH23, C10orf54, CHST3, SPOCK2) 0.258367163588149 6 0.0478654363815896 0.932430561309581 813 0.374485400744692 5 4 1 -6.8019794254236 LTS-039 chr10 73973128 73976516 3389 * c(ANAPC16, ASCC1) NA 0 NA 3.289 1 NA NA NA NA NA LTS-039 chr10 73976517 74100845 124329 * c(ANAPC16, ASCC1, DDIT4, DNAJB12) 0.259253670327081 3 0.043 1.85066016793432 109 0.593777278394072 9 7 2 -6.77003751676703 LTS-039 chr10 74100846 74100944 99 * DNAJB12 NA 0 NA 1.523 1 NA NA NA NA NA LTS-039 chr10 74100945 75003980 903036 * c(MIR1256, MIR4676, MICU1, ECD, OIT3, DNAJC9, NUDT13, FAM149B1, P4HA1, DNAJB12, PLA2G12B, MCU) 0.30336131985893 19 0.0580598098555949 0.983027082233037 746 0.48681605219435 4 3 1 -6.76066152243816 LTS-039 chr10 75003981 75005607 1627 * DNAJC9 NA 0 NA 1.56 1 NA NA NA NA NA LTS-039 chr10 75005608 75013823 8216 * c(CFAP70, DNAJC9, DNAJC9-AS1, MRPS16) NA 0 NA 1.71483246858428 107 0.709459295006684 9 NA NA -5.76443010891293 LTS-039 chr10 75013824 75016028 2205 * c(CFAP70, DNAJC9-AS1) NA 0 NA 0.921 1 NA NA NA NA NA LTS-039 chr10 75016029 75206447 190419 * c(MSS51, CFAP70, ANXA7, DNAJC9-AS1, PPP3CB) 0.258976486159301 2 0.0565685424949238 0.89283837147965 347 0.295396745007293 5 4 1 -6.80085540747321 LTS-039 chr10 75206448 75208388 1941 * PPP3CB NA 0 NA 1.306 1 NA NA NA NA NA LTS-039 chr10 75208389 75530829 322441 * c(USP54, GLUD1P3, PPP3CB, MYOZ1, AGAP5, BMS1P4, SYNPO2L, SEC24C) 0.286088035938053 2 0.0537401153701776 1.19019410221934 527 0.581323556067765 8 6 2 -6.80531324158613 LTS-039 chr10 75530830 75530924 95 * SEC24C NA 0 NA 1.795 1 NA NA NA NA NA LTS-039 chr10 75530925 75548578 17654 * c(CHCHD1, FUT11, ZSWIM8, SEC24C) NA 0 NA 1.74802171170791 113 0.436439862382679 9 NA NA -5.76444770618809 LTS-039 chr10 75548579 75548834 256 * ZSWIM8 NA 0 NA 1.124 1 NA NA NA NA NA LTS-039 chr10 75548835 75677019 128185 * c(ZSWIM8, C10orf55, PLAU, CAMK2G, NDST2) 0.272476313363485 11 0.0736877934877338 0.984814983912614 526 0.322916300841668 5 4 1 -6.8060963749038 LTS-039 chr10 75677020 75677022 3 * c(C10orf55, PLAU) NA 0 NA 1.273 1 NA NA NA NA NA LTS-039 chr10 75677023 76970906 1293884 * c(ADK, SAMD8, KAT6B, AP3M1, DUPD1, C10orf55, DUSP13, PLAU, VCL, VDAC2) 0.210830703268721 6 0.112031543177208 1.30477256921746 689 0.553385541564057 6 5 1 -6.73729688777004 LTS-039 chr10 76970907 77818526 847620 * c(ZNF503-AS2, COMTD1, ZNF503-AS1, VDAC2, C10orf11, ZNF503) 0.125354181799573 2 0.172534054609518 2.52644343271541 261 1.78510950091814 12 11 1 -6.73675137230592 LTS-039 chr10 77818527 78084054 265528 * C10orf11 NA 0 NA 0.767 1 NA NA NA NA NA LTS-039 chr10 78084055 81272338 3188284 * c(DLG5-AS1, LINC00856, PPIF, POLR3A, ZCCHC24, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, DLG5) 0.306776124730726 30 0.0793123390553877 1.05994502217118 1277 0.51268799393659 4 3 1 -6.95097155107583 LTS-039 chr10 81272339 81272474 136 * EIF5AL1 NA 0 NA 0.192 1 NA NA NA NA NA LTS-039 chr10 81272475 81697831 425357 * c(BMS1P21, EIF5AL1, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, MBL1P) 0.340970730635059 20 0.0712042835790095 0.564727550965754 291 0.385969470502796 3 2 1 -6.92860986831814 LTS-039 chr10 81697832 82406339 708508 * c(DYDC1, TMEM254-AS1, PLAC9, ANXA11, SH2D4B, MAT1A, LINC00857, SFTPD, TMEM254, TSPAN14, FAM213A, DYDC2) 0.284717888042493 42 0.0858830505628657 0.882559651466094 902 0.486456104462409 4 3 1 -6.74660821597388 LTS-039 chr10 82406340 82903547 497208 * character(0) NA 0 NA 0.587 1 NA NA NA NA NA LTS-039 chr10 82903548 88123857 5220310 * c(GRID1-AS1, NRG3, LINC00858, LRIT1, GHITM, GRID1, LRIT2, C10orf99, MIR346, CCSER2, RGR, CDHR1) 0.310711141807494 42 0.10319588006884 0.69414620565563 943 0.382883553362144 3 2 1 -6.94460773702224 LTS-039 chr10 88123858 88125998 2141 * GRID1 NA 0 NA 0.934 1 NA NA NA NA NA LTS-039 chr10 88125999 90034471 1908473 * c(KLLN, MIR4678, ADIRF, LDB3, AGAP11, CFL1P1, WAPL, GLUD1, GRID1, LINC00863, FAM35A, RNLS, PTEN, FAM25A, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, PAPSS2, OPN4, MINPP1) 0.302048498266531 24 0.0952954121650678 1.07193012911913 1422 0.511447206856445 4 3 1 -6.87912197439355 LTS-039 chr10 90034472 90733509 699038 * c(ANKRD22, LIPJ, LIPM, FAS, RNLS, STAMBPL1, ACTA2, LIPK, LIPN, LIPF) 0.279653223531879 12 0.0616394698421737 0.741836504051214 545 0.347936688832968 4 3 1 -6.89833779376003 LTS-039 chr10 90733510 90733828 319 * c(FAS, STAMBPL1, ACTA2) NA 0 NA 1.13 1 NA NA NA NA NA LTS-039 chr10 90733829 91163798 429970 * c(FAS-AS1, MIR4679-1, MIR4679-2, IFIT2, IFIT1, IFIT3, FAS, LIPA, IFIT1B, STAMBPL1, ACTA2, CH25H) 0.29510434984957 14 0.0542014962690348 1.13675791760193 449 0.49514747624941 4 3 1 -6.795652992889 LTS-039 chr10 91163799 91172585 8787 * c(IFIT1, LIPA) NA 0 NA 2.996 1 NA NA NA NA NA LTS-039 chr10 91172586 91190119 17534 * c(IFIT5, SLC16A12, LIPA) 0.33755492217304 6 0.0266339382492839 1.84443294897266 110 0.924794899651819 18 12 6 -6.74784335459389 LTS-039 chr10 91190120 91373624 183505 * c(SLC16A12, MIR107, PANK1) 0.327867615984285 3 0.0508068236886871 0.849272282587935 161 0.334832040726234 4 3 1 -6.94160770993886 LTS-039 chr10 91373625 91373709 85 * PANK1 NA 0 NA 1.465 1 NA NA NA NA NA LTS-039 chr10 91373710 91534067 160358 * c(FLJ37201, PANK1, KIF20B) 0.341175590940101 10 0.0656824008222734 1.30135154032674 204 0.473082806018495 6 4 2 -6.7596703865279 LTS-039 chr10 91534068 92617460 1083393 * c(HTR7, LINC00865, KIF20B) 0.331425365546303 4 0.0638252823469404 0.628186836096648 101 0.215501804913073 3 2 1 -7.16516492302231 LTS-039 chr10 92617461 92631409 13949 * c(RPP30, HTR7) NA 0 NA 2.135 1 NA NA NA NA NA LTS-039 chr10 92631410 95100025 2468616 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CYP26A1, CPEB3, MYOF, ANKRD1, HHEX, CYP26C1, IDE, KIF11, EXOC6, MARCH5, PPP1R3C, TNKS2, PCGF5, BTAF1) 0.280990996196092 19 0.119306450956208 1.07806556816774 2110 0.673718679473724 5 4 1 -6.77982794829605 LTS-039 chr10 95100026 95101575 1550 * MYOF NA 0 NA 1.471 1 NA NA NA NA NA LTS-039 chr10 95101576 95266860 165285 * c(MYOF, CEP55) NA 0 NA 1.65210607337942 229 0.765572557653886 8 NA NA -5.76450429724313 LTS-039 chr10 95266861 95275152 8292 * CEP55 NA 0 NA 1.946 1 NA NA NA NA NA LTS-039 chr10 95275153 95549993 274841 * c(FRA10AC1, FFAR4, PDE6C, CEP55, RBP4, LGI1) 0.311485811151239 14 0.104231568059872 1.18147711979457 437 0.535771444977159 7 5 2 -6.75438694276592 LTS-039 chr10 95549994 95552474 2481 * LGI1 NA 0 NA 0.896 1 NA NA NA NA NA LTS-039 chr10 95552475 96028821 476347 * c(SLC35G1, PIPSL, PLCE1, LGI1) 0.294805592247774 7 0.0508649004249305 0.800901059474448 324 0.320844168155304 4 3 1 -6.76665361067064 LTS-039 chr10 96028822 96030205 1384 * PLCE1 NA 0 NA 1.255 1 NA NA NA NA NA LTS-039 chr10 96030206 96480220 450015 * c(PLCE1-AS1, CYP2C19, CYP2C18, TBC1D12, HELLS, PLCE1, NOC3L) 0.266178461095798 9 0.0602123556903214 1.08023804962631 508 0.418341756744437 5 4 1 -6.78984580773896 LTS-039 chr10 96480221 96484088 3868 * c(CYP2C19, CYP2C18) NA 0 NA 0.595 1 NA NA NA NA NA LTS-039 chr10 96484089 96970537 486449 * c(ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18) 0.227407209348155 4 0.159894496465638 0.617207359354879 235 0.356789956715869 2 2 0 -6.8893387907607 LTS-039 chr10 96970538 96971611 1074 * ACSM6 NA 0 NA 1.138 1 NA NA NA NA NA LTS-039 chr10 96971612 97131173 159562 * c(SORBS1, ACSM6, PDLIM1) 0.281079327954044 13 0.0550418255883884 1.25603540897933 300 0.45139141313098 8 6 2 -6.766834896418 LTS-039 chr10 97131174 97131726 553 * SORBS1 NA 0 NA 0.922 1 NA NA NA NA NA LTS-039 chr10 97131727 99079155 1947429 * c(C10orf131, FRAT1, MIR3157, SLIT1-AS1, ARHGAP19-SLIT1, SORBS1, PIK3AP1, DNTT, TCTN3, C10orf12, BLNK, CC2D2B, CCNJ, TM9SF3, ALDH18A1, SLIT1, TLL2, ENTPD1-AS1, LCOR, ARHGAP19, OPALIN, ENTPD1, ZNF518A) 0.275208288795543 41 0.0647864879769713 0.966678611320906 2323 0.430697312840786 4 3 1 -6.84437236356973 LTS-039 chr10 99079156 99093857 14702 * c(FRAT1, FRAT2) 0.246 1 NA 1.83146563495352 81 0.576994507002546 9 9 0 -5.76442141933641 LTS-039 chr10 99093858 99474455 380598 * c(MIR5692C2, HOGA1, MORN4, RRP12, FRAT2, ANKRD2, C10orf62, EXOSC1, PGAM1, PI4K2A, AVPI1, MMS19, UBTD1, MARVELD1, ZDHHC16) 0.26742753970586 33 0.0815282996042701 1.02918116295137 903 0.46870175715108 5 4 1 -6.77013537480001 LTS-039 chr10 99474456 99504680 30225 * c(ZFYVE27, MARVELD1) 0.261491094362071 3 0.0329292170167062 1.93593273008632 48 0.615805803183148 16 12 4 -6.74627177756926 LTS-039 chr10 99504681 99507913 3233 * ZFYVE27 NA 0 NA 0.77 1 NA NA NA NA NA LTS-039 chr10 99507914 101148063 1640150 * c(MIR1287, MIR4685, ZFYVE27, CNNM1, R3HCC1L, HPS1, GOLGA7B, CRTAC1, HPSE2, SFRP5, LOXL4, PYROXD2) 0.303135820062146 33 0.0675108156318136 0.910941466738513 906 0.370116713101013 4 3 1 -6.74038448195126 LTS-039 chr10 101148064 101149992 1929 * CNNM1 NA 0 NA 2.584 1 NA NA NA NA NA LTS-039 chr10 101149993 101421376 271384 * c(NKX2-3, CNNM1, GOT1, ENTPD7, SLC25A28) NA 0 NA 1.42004634689715 235 0.571279904031887 7 NA NA -5.76445204354129 LTS-039 chr10 101421377 101439012 17636 * ENTPD7 NA 0 NA 0.948 1 NA NA NA NA NA LTS-039 chr10 101439013 101927176 488164 * c(DNMBP-AS1, ERLIN1, ABCC2, COX15, CPN1, DNMBP, CUTC, ENTPD7) 0.309725901724383 7 0.0361142367389662 1.01095130904755 774 0.444384033988037 4 3 1 -6.82362006361823 LTS-039 chr10 101927177 101933894 6718 * ERLIN1 NA 0 NA 1.345 1 NA NA NA NA NA LTS-039 chr10 101933895 102020106 86212 * c(ERLIN1, CHUK, CWF19L1, SNORA12) NA 0 NA 1.33715163575274 269 0.483654592223204 6 NA NA -5.76535223896262 LTS-039 chr10 102020107 102020689 583 * CWF19L1 NA 0 NA 2.509 1 NA NA NA NA NA LTS-039 chr10 102020690 102040682 19993 * c(BLOC1S2, CWF19L1) NA 0 NA 2.52217111006454 58 0.635894750962194 13 NA NA -5.76441031711804 LTS-039 chr10 102040683 104142679 2101997 * c(TLX1NB, KCNIP2-AS1, MIR3158-1, MIR3158-2, NPM3, LBX1, MGEA5, FGF8, PPRC1, DPCD, SEC31B, POLL, BLOC1S2, KCNIP2, TLX1, LBX1-AS1, NDUFB8, PAX2, PITX3, HIF1AN, SLF2, C10orf2, SEMA4G, SCD, FBXW4, MIR608, WNT8B, C10orf76, HPS6, PDZD7, KAZALD1, SFXN3, ELOVL3, LZTS2, MRPL43, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, NOLC1) 0.269415993075193 38 0.0698374509774857 1.08962968593144 3176 0.526540881875285 5 4 1 -6.79232653164662 LTS-039 chr10 104142680 104155599 12920 * NFKB2 NA 0 NA 2.54 1 NA NA NA NA NA LTS-039 chr10 104155600 104215159 59560 * c(RPARP-AS1, NFKB2, PSD, MIR146B, CUEDC2, FBXL15, C10orf95) 0.263677895074127 9 0.0391868742197067 1.49725418248203 370 0.750440538607098 12 9 3 -6.75356228644867 LTS-039 chr10 104215160 104228828 13669 * c(RPARP-AS1, MFSD13A) NA 0 NA 0.898 1 NA NA NA NA NA LTS-039 chr10 104228829 104377959 149131 * c(ACTR1A, SUFU, MFSD13A) 0.280031920215242 12 0.0278143193991218 1.11082154026242 248 0.45485991438046 8 6 2 -6.8033315595407 LTS-039 chr10 104377960 104574957 196998 * c(SFXN2, ARL3, SUFU, WBP1L, TRIM8) 0.269854582773299 16 0.0419372547186071 1.66902372175193 396 0.741612207441023 8 6 2 -6.74754297974695 LTS-039 chr10 104574958 104913176 338219 * c(BORCS7-ASMT, BORCS7, CYP17A1, NT5C2, CNNM2, WBP1L, AS3MT) 0.305488414753178 13 0.0464288813740007 1.15364932065364 481 0.44923557325439 7 5 2 -6.78831939696511 LTS-039 chr10 104913177 104934563 21387 * NT5C2 NA 0 NA 0.718 1 NA NA NA NA NA LTS-039 chr10 104934564 105063732 129169 * c(NT5C2, RPEL1, PCGF6, INA) NA 0 NA 0.679376516477184 128 0.325133134451274 3 NA NA -5.76595110060373 LTS-039 chr10 105063733 105824361 760629 * c(MIR936, MIR1307, SH3PXD2A-AS1, CALHM3, COL17A1, PDCD11, CALHM1, CALHM2, TAF5, OBFC1, PCGF6, USMG5, NEURL1, SH3PXD2A, SLK) 0.265577428602399 25 0.0812645269064758 1.1143827676239 1388 0.534860110918798 5 4 1 -6.76470413607433 LTS-039 chr10 105824362 105886090 61729 * c(SFR1, COL17A1) NA 0 NA 2.01590860443911 82 0.869881695379688 10 NA NA -5.76443119553265 LTS-039 chr10 105886091 106118326 232236 * c(MIR4482, GSTO2, SFR1, CFAP58, MIR609, CFAP43, ITPRIP, GSTO1) 0.160420833805194 3 0.202649944485559 1.05094944855931 426 0.474262665119338 6 5 1 -6.79057723835819 LTS-039 chr10 106118327 106121733 3407 * CFAP58 NA 0 NA 0.851 1 NA NA NA NA NA LTS-039 chr10 106121734 111628550 5506817 * c(SORCS1, CFAP58, SORCS3, XPNPEP1) 0.281412952358643 14 0.13372293810646 0.685316997838846 499 0.39921490637059 3 2 1 -7.02011852072211 LTS-039 chr10 111628551 111629699 1149 * XPNPEP1 NA 0 NA 0.937 1 NA NA NA NA NA LTS-039 chr10 111629700 112572752 943053 * c(ADD3-AS1, SMNDC1, ADD3, DUSP5, RBM20, MXI1, XPNPEP1, SMC3) 0.256666347201872 18 0.0771234686186034 1.2121065446815 677 0.655350649847506 5 4 1 -6.76111044238642 LTS-039 chr10 112572753 112579758 7006 * RBM20 NA 0 NA 2.625 1 NA NA NA NA NA LTS-039 chr10 112579759 112724203 144445 * c(MIR4680, PDCD4, RBM20, PDCD4-AS1, RPL13AP6, SHOC2, BBIP1) 0.404 1 NA 1.93300856933312 249 0.78487897554388 10 10 0 -5.76447365487038 LTS-039 chr10 112724204 114192304 1468101 * c(ADRA2A, GUCY2GP, ACSL5, GPAM, ZDHHC6, TECTB, SHOC2) 0.271732943625431 14 0.0584257300687457 0.904963379382526 629 0.384943300049284 4 3 1 -6.84933844693435 LTS-039 chr10 114192305 114192936 632 * ZDHHC6 NA 0 NA 1.468 1 NA NA NA NA NA LTS-039 chr10 114192937 114849351 656415 * c(MIR4295, VTI1A, ZDHHC6, TCF7L2) 0.303 1 NA 1.50817587253041 208 1.09852092881653 7 7 0 -5.76526044853673 LTS-039 chr10 114849352 114886629 37278 * TCF7L2 NA 0 NA 0.713 1 NA NA NA NA NA LTS-039 chr10 114886630 119049856 4163227 * c(MIR2110, MIR3663, MIR4483, VAX1, PDZD8, PNLIPRP3, TRUB1, C10orf82, ADRB1, HSPA12A, ATRNL1, GFRA1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, ABLIM1, NRAP, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, SHTN1, FAM160B1, SLC18A2, TCF7L2, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.27487297492992 69 0.0969219327091046 0.98815262055822 3629 0.46880996455144 5 4 1 -6.85502092353695 LTS-039 chr10 119049857 119078372 28516 * PDZD8 NA 0 NA 1.794 1 NA NA NA NA NA LTS-039 chr10 119078373 119302582 224210 * c(PDZD8, EMX2OS, EMX2) 0.267 1 NA 1.92492223942847 48 1.02198736997928 10 10 0 -5.7644934975556 LTS-039 chr10 119302583 119302635 53 * c(EMX2OS, EMX2) NA 0 NA 0.785 1 NA NA NA NA NA LTS-039 chr10 119302636 121196158 1893523 * c(MIR4681, PRDX3, SFXN4, CACUL1, EMX2OS, EMX2, RAB11FIP2, CASC2, PRLHR, GRK5, NANOS1, FAM204A, SNORA19, EIF3A) 0.262511644810474 7 0.179500895341977 0.917301734579818 1049 0.422033132580539 4 3 1 -6.76091704651224 LTS-039 chr10 121196159 121199189 3031 * GRK5 0.435 1 NA 0.769564924535682 7 0.187434814065609 3 3 0 -5.76473142386244 LTS-039 chr10 121199190 122669002 1469813 * c(MIR4682, SEC23IP, PLPP4, INPP5F, WDR11-AS1, GRK5, WDR11, RGS10, TIAL1, MCMBP, BAG3) 0.412698313732377 13 0.0549751692200145 0.864615379859326 912 0.420430084996591 4 2 2 -6.80139653126084 LTS-039 chr10 123233865 123310979 77115 * FGFR2 0.450580611783954 3 0.013114877048604 2.42738811264228 138 1.30618941560247 12 6 6 -7.86802475274101 LTS-039 chr10 123310980 123324002 13023 * FGFR2 NA 0 NA 1.887 1 NA NA NA NA NA LTS-039 chr10 123324003 123810050 486048 * c(TACC2, ATE1, FGFR2, NSMCE4A) 0.428682397904159 4 0.125287668986217 1.65539925303304 245 0.717440506099685 8 4 4 -6.73355525643123 LTS-039 chr10 123810051 123842129 32079 * TACC2 NA 0 NA 0.691 1 NA NA NA NA NA LTS-039 chr10 123842130 123847090 4961 * TACC2 0.411217053900689 7 0.0566064105405537 0.533800367383994 110 0.178621710642708 5 3 2 -6.78128072375027 LTS-039 chr10 123847091 123847095 5 * TACC2 NA 0 NA 0.834 1 NA NA NA NA NA LTS-039 chr10 123847096 124329747 482652 * c(MIR3941, TACC2, BTBD16, DMBT1, ARMS2, HTRA1, PLEKHA1) 0.359168410451784 10 0.0440429083710167 0.869087020726371 463 0.401316175334554 3 2 1 -6.84834708199714 LTS-039 chr10 124329748 124330296 549 * DMBT1 NA 0 NA 0.437 1 NA NA NA NA NA LTS-039 chr10 124330297 124708266 377970 * c(FAM24B-CUZD1, FAM24A, DMBT1, FAM24B, DMBT1P1, C10orf120, LOC399815, CUZD1, C10orf88) 0.400830609943498 8 0.0577754273026171 0.654432954806257 366 0.224774953501354 3 2 1 -6.91847328084467 LTS-039 chr10 124708267 124752858 44592 * c(PSTK, IKZF5, C10orf88) 0.400312412478509 3 0.097 1.20883553980628 131 0.517336840763838 5 3 2 -6.73737739079523 LTS-039 chr10 124752859 124897355 144497 * c(HMX3, ACADSB, IKZF5) 0.36402382098349 6 0.0855982865872131 0.801420266333982 195 0.398305975168102 3 2 1 -6.74493996825923 LTS-039 chr10 124897356 124897425 70 * character(0) NA 0 NA 1.369 1 NA NA NA NA NA LTS-039 chr10 124897426 124924945 27520 * c(HMX2, BUB3) 0.365 1 NA 1.43649859059745 164 1.10163490591075 7 7 0 -5.76441021004417 LTS-039 chr10 125425904 127585195 2159292 * c(TEX36-AS1, MIR4296, MIR4484, MMP21, CPXM2, CTBP2, FAM175B, EDRF1, LOC283038, GPR26, TEX36, NKX1-2, METTL10, FLJ37035, OAT, CHST15, ZRANB1, DHX32, BCCIP, LHPP, UROS, FANK1, FAM53B) 0.340437149103522 58 0.110423975319986 0.903539120062054 1643 0.48894412421143 4 3 1 -6.82309358692328 LTS-039 chr10 127585196 127585229 34 * FANK1 NA 0 NA 0.708 1 NA NA NA NA NA LTS-039 chr10 127585230 129539463 1954234 * c(LINC00601, FANK1-AS1, C10orf90, DOCK1, FOXI2, NPS, FAM196A, ADAM12, FANK1) 0.326896138551265 20 0.138195237559804 0.628221891442866 925 0.371477844053866 3 2 1 -6.92204154827211 LTS-039 chr10 129539464 129676052 136589 * character(0) NA 0 NA 1.197 1 NA NA NA NA NA LTS-039 chr10 129676053 131557578 1881526 * c(CLRN3, MGMT, MKI67, PTPRE) 0.363101681438401 20 0.0570096944664493 0.939713819142872 557 0.478690799413879 3 2 1 -7.10470057707212 LTS-039 chr10 131557579 131565074 7496 * MGMT NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr10 131565075 133795244 2230170 * c(MIR378C, MIR4297, GLRX3, CTAGE7P, EBF3, TCERG1L, LINC00959, LINC01164, MGMT, PPP2R2D, BNIP3) 0.369159404756214 11 0.130559425689468 0.692638843778649 492 0.367314113916425 3 2 1 -6.74013337948212 LTS-039 chr10 133795245 133795379 135 * BNIP3 NA 0 NA 0.52 1 NA NA NA NA NA LTS-039 chr10 133795380 134022993 227614 * c(DPYSL4, JAKMIP3, STK32C, BNIP3) 0.402286095491125 12 0.0572908581210163 0.506169923233442 239 0.217424502277873 2 1 1 -6.88355348557072 LTS-039 chr10 134022994 134036129 13136 * STK32C NA 0 NA 1.181 1 NA NA NA NA NA LTS-039 chr10 134036130 134189264 153135 * c(STK32C, LRRC27) 0.459 1 NA 0.854324438437546 165 0.424223321185893 4 4 0 -5.76534701158913 LTS-039 chr10 134189265 134189363 99 * LRRC27 NA 0 NA 0.997 1 NA NA NA NA NA LTS-039 chr10 134189364 134421556 232193 * c(C10orf91, PWWP2B, INPP5A, LRRC27) 0.475 1 NA 1.28658333253649 168 0.490277585869637 6 6 0 -5.76482407910453 LTS-039 chr10 134421557 134459363 37807 * INPP5A NA 0 NA 0.789 1 NA NA NA NA NA LTS-039 chr10 134459364 134693137 233774 * c(INPP5A, CFAP46, NKX6-2) 0.39 1 NA 0.542937593022505 248 0.212160998753446 2 2 0 -5.76600641469867 LTS-039 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.209 1 NA NA NA NA NA LTS-039 chr10 134694406 134756359 61954 * CFAP46 NA 0 NA 0.260832231715064 167 0.0800853424381982 1 NA NA -6.23050611744758 LTS-039 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 0.919 1 NA NA NA NA NA LTS-039 chr10 134884462 135053386 168925 * c(VENTX, UTF1, ADGRA1, KNDC1) 0.382228425770566 13 0.0648992315548517 0.410107950382353 404 0.15198463366442 2 1 1 -7.32884964975129 LTS-039 chr10 135053387 135233982 180596 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, ECHS1, PAOX, VENTX, FUOM, CALY, MIR202, MTG1) 0.339296763461933 5 0.100168358277452 0.885905016312844 627 0.409185907284788 3 2 1 -6.82407440265289 LTS-039 chr10 135233983 135438977 204995 * c(CYP2E1, SPRNP1, FRG2B, SPRN, SCART1, MTG1, SYCE1) 0.331998792716407 21 0.110848695677186 0.607098931205037 379 0.305675344286645 3 2 1 -6.83971449479915 LTS-039 chr10 135438978 135473116 34139 * FRG2B NA 0 NA 0.638913747219003 7 0.159842333030307 3 NA NA -5.77361887899934 LTS-039 chr11 193025 193096 72 * SCGB1C1 0.358 1 NA 0.933 1 NA NA NA NA NA LTS-039 chr11 193097 204419 11323 * c(ODF3, SCGB1C1, BET1L) 0.332739168835803 7 0.0846668541430245 0.813208330936033 91 0.237547237638938 6 4 2 -6.79617729996947 LTS-039 chr11 204420 372725 168306 * c(IFITM3, IFITM2, NLRP6, SIRT3, B4GALNT4, IFITM5, BET1L, PSMD13, RIC8A, PGGHG, IFITM1) 0.296398745549603 38 0.0555310903140317 1.3236059123112 602 1.33244769712365 4 3 1 -6.74215209002227 LTS-039 chr11 372726 382097 9372 * B4GALNT4 0.318 1 NA 0.638484412206271 102 0.183312917713988 3 3 0 -5.76635862392026 LTS-039 chr11 382098 392700 10603 * c(PKP3, B4GALNT4) NA 0 NA 2.092 1 NA NA NA NA NA LTS-039 chr11 392701 804488 411788 * c(MIR210HG, DEAF1, PKP3, LRRC56, LOC143666, LOC171391, DRD4, LMNTD2, TMEM80, HRAS, ANO9, PDDC1, IRF7, MIR210, CEND1, CDHR5, PIDD1, PHRF1, SIGIRR, RNH1, SCT, EPS8L2, TALDO1, SLC25A22, RASSF7, PTDSS2) 0.278602242533201 49 0.0708649249278796 1.00101287804622 1637 0.431967499636856 4 3 1 -6.79331544407778 LTS-039 chr11 804489 809965 5477 * c(PIDD1, RPLP2) NA 0 NA 2.099 1 NA NA NA NA NA LTS-039 chr11 809966 849053 39088 * c(CRACR2B, POLR2L, PNPLA2, RPLP2, SNORA52, TSPAN4, CD151) 0.329848775862157 15 0.0608293475537057 1.62751949317299 244 1.09146377661197 16 11 5 -6.74922931389365 LTS-039 chr11 849054 849955 902 * TSPAN4 NA 0 NA 0.278 1 NA NA NA NA NA LTS-039 chr11 849956 1018496 168541 * c(AP2A2, MUC6, CHID1, TSPAN4) 0.320137248694005 44 0.0856242683337823 0.827256494733131 462 0.365582618856479 4 3 1 -6.77871299467833 LTS-039 chr11 1018497 1018580 84 * MUC6 NA 0 NA 0.404 1 NA NA NA NA NA LTS-039 chr11 1018581 1284418 265838 * c(MUC2, MUC6, MUC5B) 0.349646561628331 65 0.0777729282294592 0.57442672225503 965 0.263633118941112 3 2 1 -6.88144840124469 LTS-039 chr11 1284419 1911397 626979 * c(FAM99B, MIR4298, CTSD, DUSP8, TOLLIP-AS1, KRTAP5-AS1, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, KRTAP5-5, KRTAP5-2, KRTAP5-6, TOLLIP, TNNI2, MOB2, SYT8, BRSK2) 0.319780196809785 47 0.0683280639951455 0.79865116424351 877 0.458898529833921 4 3 1 -6.81744343834999 LTS-039 chr11 1911398 1911439 42 * LSP1 0.222 1 NA 1.827 1 NA NA NA NA NA LTS-039 chr11 1911440 2150444 239005 * c(MIR675, MRPL23-AS1, H19, IGF2, LSP1, MRPL23, TNNT3, INS-IGF2) 0.254976848906133 14 0.061381038343546 1.13854481852142 216 0.580243871459289 5 4 1 -6.74327533371127 LTS-039 chr11 2150445 2150451 7 * c(IGF2, INS-IGF2) NA 0 NA 0.7 1 NA NA NA NA NA LTS-039 chr11 2150452 2189209 38758 * c(IGF2, INS, IGF2-AS, MIR483, TH, INS-IGF2) 0.288023595054976 8 0.0507965128161935 0.694641717669228 217 0.297294739013365 4 3 1 -6.77047262821702 LTS-039 chr11 2189210 2189323 114 * TH NA 0 NA 0.961 1 NA NA NA NA NA LTS-039 chr11 2189324 3187853 998530 * c(MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, C11orf21, TRPM5, KCNQ1, ASCL2, NAP1L4, SLC22A18, SLC22A18AS, KCNQ1DN, SNORA54, TH, PHLDA2, CARS, CD81) 0.305995995881246 42 0.0844425458759207 1.04329800805668 1096 0.426606974386973 4 3 1 -6.81906712083433 LTS-039 chr11 3187854 3692665 504812 * c(OR7E12P, OSBPL5, MRGPRE, ART5, MRGPRG-AS1, MRGPRG, ART1, CHRNA10, TSSC2, TRPC2, ZNF195) 0.245414551652827 5 0.0546671747943864 0.753769180962022 332 0.407601191127586 5 4 1 -6.9521971920827 LTS-039 chr11 3692666 3696181 3516 * character(0) NA 0 NA 1.749 1 NA NA NA NA NA LTS-039 chr11 3696182 4185675 489494 * c(MIR4687, PGAP2, RHOG, NUP98, RRM1, STIM1) 0.29315982440219 11 0.057617390051647 0.970940078029086 597 0.387989733967079 4 3 1 -6.75062824801759 LTS-039 chr11 4185676 4229251 43576 * c(LOC100506082, RRM1) NA 0 NA 0.532 1 NA NA NA NA NA LTS-039 chr11 4229252 4511185 281934 * c(OR52K2, OR52B4, OR52K1, TRIM21) 0.438078558156372 3 0.105057127316522 0.536700190426771 136 0.277551083445136 2 1 1 -6.73626186943996 LTS-039 chr11 4511186 4562829 51644 * character(0) NA 0 NA 2.203 1 NA NA NA NA NA LTS-039 chr11 4562830 4626810 63981 * c(OR52M1, C11orf40, OR52I2, OR52I1, TRIM68) 0.188794032619115 3 0.166259836801716 0.86730698829932 178 0.498456013617636 6 5 1 -6.76543228734286 LTS-039 chr11 4626811 4660885 34075 * TRIM68 NA 0 NA 0.353 1 NA NA NA NA NA LTS-039 chr11 4660886 4967930 307045 * c(OR51A7, OR51S1, OR51F2, OR52R1, OR51E1, OR51F1, OR51D1, OR51T1, OR51A4, OR51G1, OR51G2, OR51E2) 0.296895679345913 32 0.0611911007128619 0.550308519350857 477 0.315824503140305 4 3 1 -7.1352021779387 LTS-039 chr11 4967931 4967942 12 * OR51A4 NA 0 NA 0.35 1 NA NA NA NA NA LTS-039 chr11 4967943 4976978 9036 * c(OR51A4, OR51A2) NA 0 NA 0.158445538542441 39 0.14589419011685 0 NA NA -5.76564053104437 LTS-039 chr11 4976979 5009215 32237 * character(0) NA 0 NA 0.799 1 NA NA NA NA NA LTS-039 chr11 5009216 6232980 1223765 * c(TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR52W1, OR56A4, OR56A1, UBQLNL, C11orf42, OR56B4, OR52A1, OR52B2, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52L1, OR52B6, OR56B1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, OR51B4, OR51B2, OR52N1, FAM160A2, TRIM5) 0.315839199500995 96 0.0641154377980459 0.513016577064042 1728 0.3102586747739 3 2 1 -7.86942997763715 LTS-039 chr11 6232981 6293335 60355 * c(CNGA4, FAM160A2, CCKBR) 0.319201243954343 2 0.0403050865276332 0.767748408407092 236 0.868542445213887 7 5 2 -6.77661202760165 LTS-039 chr11 6293336 6415272 121937 * c(PRKCDBP, SMPD1, CCKBR) NA 0 NA 1.39160164550055 82 0.61432411395194 7 NA NA -5.76457768620032 LTS-039 chr11 6415273 6487050 71778 * c(TRIM3, APBB1, HPX, SMPD1) NA 0 NA 0.640662726910982 267 0.211523940698602 3 NA NA -5.77490783485583 LTS-039 chr11 6487051 6497007 9957 * c(TRIM3, ARFIP2) NA 0 NA 2.805 1 NA NA NA NA NA LTS-039 chr11 6497008 6518885 21878 * c(DNHD1, ARFIP2, TIMM10B) NA 0 NA 1.30708245185737 138 0.392848288926869 6 NA NA -5.76456399676853 LTS-039 chr11 6518886 6593282 74397 * DNHD1 0.351 1 NA 0.54301901631682 418 0.228382279524321 2 2 0 -5.76485444773458 LTS-039 chr11 6593283 6616211 22929 * character(0) NA 0 NA 1.718 1 NA NA NA NA NA LTS-039 chr11 6616212 6623537 7326 * RRP8 NA 0 NA 0.961867901839869 140 0.299556681697881 4 NA NA -5.76469097643193 LTS-039 chr11 6623538 6640213 16676 * c(TPP1, RRP8, ILK, TAF10) 0.316502695045414 8 0.0547681802822457 1.50643894198268 236 0.526363150248396 10 7 3 -6.73572280431315 LTS-039 chr11 6640214 6702086 61873 * c(TPP1, MRPL17, DCHS1) 0.322448303639626 10 0.04295786048883 0.731034316555592 286 0.192035443842581 4 3 1 -6.96742701453423 LTS-039 chr11 6702087 6704648 2562 * MRPL17 0.327279579878996 2 0.0127279220613579 1.42839843470351 49 0.583130660612987 19 13 6 -6.77180385014151 LTS-039 chr11 6704649 6735805 31157 * GVINP1 NA 0 NA 0.603 1 NA NA NA NA NA LTS-039 chr11 6735806 7531485 795680 * c(OR2D3, OR2D2, SYT9, OR10A5, OR2AG1, RBMXL2, OR10A4, OLFML1, NLRP14, OR2AG2, OR10A2, GVINP1, ZNF214, ZNF215, OR6A2) 0.318757891036113 35 0.0739112913673996 0.517998849151568 771 0.274710849015493 3 2 1 -7.59687635012796 LTS-039 chr11 7531486 7642280 110795 * c(OLFML1, PPFIBP2) 0.398 1 NA 1.56170298962744 85 0.800697738792588 8 8 0 -5.76452089342782 LTS-039 chr11 7642281 7749759 107479 * c(OVCH2, CYB5R2, PPFIBP2) 0.296736464596427 5 0.0508055115120397 0.82887664999823 261 0.292389852756034 4 3 1 -6.73721346704894 LTS-039 chr11 7749760 7982767 233008 * c(OR5P2, OR5P3, OR5E1P, OR10A3, LOC283299, NLRP10, OR10A6) 0.340223197631906 14 0.0467250550479159 0.47312986263963 196 0.272393501865798 3 2 1 -7.28256663320443 LTS-039 chr11 7982768 8693616 710849 * c(NLRP10, LMO1, STK33, TUB, RIC3, EIF3F, TRIM66) 0.280868166874617 40 0.101467662525859 0.844916286392722 924 0.489616205903759 4 3 1 -6.75439123822401 LTS-039 chr11 8693617 8693765 149 * character(0) NA 0 NA 1.261 1 NA NA NA NA NA LTS-039 chr11 8693766 8747798 54033 * c(RPL27A, SNORA3A, ST5, SNORA3B) 0.298538311079241 6 0.0387319850597238 1.72651091788556 265 0.658837169029233 14 10 4 -6.74798479523397 LTS-039 chr11 8747799 8751523 3725 * ST5 NA 0 NA 1.137 1 NA NA NA NA NA LTS-039 chr11 8751524 9547058 795535 * c(MIR5691, IPO7, DENND5A, KRT8P41, TMEM41B, TMEM9B-AS1, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, SCUBE2, LOC644656, ST5, SNORA23, ZNF143) 0.285907280327206 30 0.0495820346589321 1.04734179031545 1077 0.722456715253834 4 3 1 -6.78956236981553 LTS-039 chr11 9547059 9549021 1963 * ZNF143 NA 0 NA 2.285 1 NA NA NA NA NA LTS-039 chr11 9549022 9598839 49818 * c(WEE1, ZNF143) NA 0 NA 2.49596611577494 61 0.956092381845474 13 NA NA -5.76441220861291 LTS-039 chr11 9598840 9599268 429 * WEE1 NA 0 NA 1.094 1 NA NA NA NA NA LTS-039 chr11 9599269 10819437 1220169 * c(MRVI1-AS1, MTRNR2L8, MRVI1, LYVE1, ADM, EIF4G2, SWAP70, AMPD3, SBF2-AS1, LOC440028, RNF141, WEE1, SBF2, CTR9) 0.312490584505972 13 0.0463474890753506 0.959204344966141 1186 0.431960272172817 4 3 1 -6.81546254049284 LTS-039 chr11 10819438 10820530 1093 * EIF4G2 NA 0 NA 1.439 1 NA NA NA NA NA LTS-039 chr11 10820531 10876685 56155 * c(EIF4G2, ZBED5, SNORD97) 0.273 1 NA 1.66161441489511 162 0.568896191291987 8 8 0 -5.76449968425877 LTS-039 chr11 10876686 11292381 415696 * c(ZBED5, ZBED5-AS1) NA 0 NA 0.725 1 NA NA NA NA NA LTS-039 chr11 11292382 17398400 6106019 * c(MIR4299, LINC00958, SPON1, OR7E14P, C11orf58, CYP2R1, COPB1, PLEKHA7, RRAS2, DKK3, CSNK2A3, GALNT18, NCR3LG1, INSC, ARNTL, NUCB2, PDE3B, PIK3C2A, USP47, SOX6, PARVA, PSMA1, PTH, RPS13, RASSF10, TEAD1, CALCA, CALCB, FAR1, BTBD10, MICALCL, MICAL2) 0.278603738323092 54 0.109922571376916 0.984650047799598 3080 0.54166615814534 5 4 1 -6.86969388713437 LTS-039 chr11 17398401 17630043 231643 * c(USH1C, OTOG, NCR3LG1, KCNJ11, ABCC8) 0.295051989864459 27 0.0969549341666491 0.794411427035812 625 0.376719922407167 4 3 1 -6.74647894992257 LTS-039 chr11 17630044 17799340 169297 * c(OTOG, KCNC1, MYOD1) 0.38073283850883 9 0.0912428079357491 0.504801346836095 404 0.195339100145485 2 1 1 -6.91444096516718 LTS-039 chr11 17799341 17800952 1612 * KCNC1 NA 0 NA 0.778 1 NA NA NA NA NA LTS-039 chr11 17800953 18127636 326684 * c(SAAL1, SERGEF, KCNC1, TPH1) 0.317861838807281 4 0.0254296414970142 0.865195884851975 328 0.448546749802942 7 5 2 -7.01520546146163 LTS-039 chr11 18127637 18291281 163645 * c(SAA2-SAA4, SAAL1, MRGPRX3, MRGPRX4, LOC494141, SAA1, SAA2, SAA3P, SAA4) 0.44344444649879 4 0.0781126323543979 0.612884622788842 230 0.298474087039624 2 1 1 -6.77168270952184 LTS-039 chr11 18291282 18731985 440704 * c(SPTY2D1-AS1, HPS5, SPTY2D1, TMEM86A, LDHAL6A, IGSF22, GTF2H1, LDHA, LDHC, UEVLD, SAA1, TSG101) 0.319986745561509 13 0.120488216255409 0.949861452743541 902 0.458119856081874 4 3 1 -6.75876649333352 LTS-039 chr11 18731986 18732231 246 * IGSF22 NA 0 NA 0.792 1 NA NA NA NA NA LTS-039 chr11 18732232 19077960 345729 * c(MRGPRX2, MRGPRX1, IGSF22, PTPN5) 0.34353297572903 2 0.0905096679918781 0.702904735301249 269 0.270051088317158 3 2 1 -6.78870414546906 LTS-039 chr11 19077961 19077964 4 * MRGPRX2 NA 0 NA 0.915 1 NA NA NA NA NA LTS-039 chr11 19077965 20473856 1395892 * c(LOC100126784, MIR4486, MIR4694, NAV2-AS5, PRMT3, HTATIP2, MRGPRX2, DBX1, NAV2-AS4, ZDHHC13, E2F8, CSRP3, NAV2) 0.298182406846417 15 0.0545540361214719 1.07253380649647 773 0.559026499455814 4 3 1 -6.82309877916222 LTS-039 chr11 20473857 20483526 9670 * PRMT3 NA 0 NA 0.591 1 NA NA NA NA NA LTS-039 chr11 20483527 27017958 6534432 * c(CCDC179, PRMT3, MUC15, SLC5A12, ANO5, FANCF, SVIP, GAS2, LUZP2, FIBIN, NELL1, SLC17A6, ANO3, SLC6A5) 0.331418464831121 70 0.0955155228948239 0.739454880001575 1595 0.346355278696086 3 2 1 -6.88401901240558 LTS-039 chr11 27017959 27018019 61 * FIBIN 0.287 1 NA 1.05183961585384 3 0.932478596715943 5 5 0 -5.76441014985 LTS-039 chr11 27018020 27078890 60871 * c(FIBIN, BBOX1) NA 0 NA 0.880048120396792 29 0.180977817544996 4 NA NA -5.76460369277423 LTS-039 chr11 27078891 27114736 35846 * BBOX1 NA 0 NA 1.472 1 NA NA NA NA NA LTS-039 chr11 27114737 28311971 1197235 * c(LINC00678, METTL15, BDNF-AS, LIN7C, LGR4, BDNF, MIR610, KIF18A, BBOX1, CCDC34) 0.286926413638267 17 0.0591596792339075 1.009437067483 653 0.512459694879303 4 3 1 -6.79411824802964 LTS-039 chr11 28311972 30255790 1943819 * c(METTL15, FSHB, KCNA4) 0.181176199663116 4 0.143452663504958 0.586316073222944 180 0.553541674448016 2 2 0 -6.78344629352152 LTS-039 chr11 30255791 30921738 665948 * c(DCDC5, ARL14EP, FSHB, MPPED2) 0.286025721342376 9 0.048177911028926 1.28182469664051 334 0.692293005747137 8 6 2 -6.80108390688353 LTS-039 chr11 30921739 30921845 107 * DCDC5 NA 0 NA 0.65 1 NA NA NA NA NA LTS-039 chr11 30921846 32421704 1499859 * c(DCDC5, DNAJC24, IMMP1L, ELP4, DCDC1, DKFZp686K1684, PAX6, RCN1, WT1) 0.279556941154601 13 0.131577607010717 0.8585148946773 764 0.404771722526179 4 3 1 -6.7521413311717 LTS-039 chr11 32421705 32437983 16279 * WT1 NA 0 NA 1.911 1 NA NA NA NA NA LTS-039 chr11 32437984 32627788 189805 * c(EIF3M, CCDC73, WT1-AS, WT1) 0.277834123272926 14 0.0922850636182961 1.52248632552908 193 0.906980682239444 8 6 2 -6.73365678053556 LTS-039 chr11 32627789 32632644 4856 * CCDC73 NA 0 NA 0.682 1 NA NA NA NA NA LTS-039 chr11 32632645 33695497 1062853 * c(HIPK3, CSTF3, KIAA1549L, LINC00294, CSTF3-AS1, CCDC73, TCP11L1, PRRG4, QSER1, DEPDC7) 0.291438406331578 22 0.0470950268971317 0.90340954726638 1236 0.439787163452072 4 3 1 -6.74371142198547 LTS-039 chr11 33695498 33792272 96775 * c(C11orf91, KIAA1549L, FBXO3, CD59) 0.282053005562954 13 0.0396445747573651 1.16939854867258 285 0.626867725475949 8 6 2 -6.76078877271517 LTS-039 chr11 33792273 34074197 281925 * c(FBXO3, LMO2, CAPRIN1) 0.25 1 NA 2.41136617266553 66 0.861977819091687 12 12 0 -5.76464304930168 LTS-039 chr11 34074198 34093199 19002 * CAPRIN1 NA 0 NA 0.668 1 NA NA NA NA NA LTS-039 chr11 34093200 34533429 440230 * c(ELF5, ABTB2, CAPRIN1, NAT10, CAT) 0.25209697556043 10 0.135136309784685 1.02377326418945 623 0.42124733584483 5 4 1 -6.73687740880656 LTS-039 chr11 34533430 34643823 110394 * c(ELF5, EHF) NA 0 NA 2.225 1 NA NA NA NA NA LTS-039 chr11 34643824 34969038 325215 * c(MIR1343, EHF, APIP, PDHX) 0.249845799067014 11 0.0390514811731665 1.71566089598574 181 0.602283918698767 9 7 2 -6.73474249876456 LTS-039 chr11 34969039 34969112 74 * PDHX 0.289 1 NA 0.663 1 NA NA NA NA NA LTS-039 chr11 34969113 36252124 1283012 * c(MIR3973, LDLRAD3, FJX1, PAMR1, TRIM44, SLC1A2, PDHX, CD44) 0.27371737854345 7 0.03044589267787 1.09129433731252 851 0.604424950734185 8 6 2 -7.04357956880544 LTS-039 chr11 36252125 36291016 38892 * LDLRAD3 0.318205940042103 2 0.0997020561473032 2.62541202951727 41 4.45463350316959 10 7 3 -6.73321225640827 LTS-039 chr11 36291017 36291121 105 * character(0) NA 0 NA 0.894 1 NA NA NA NA NA LTS-039 chr11 36291122 36509357 218236 * c(COMMD9, TRAF6, PRR5L) 0.151151737768001 2 0.176776695296637 1.12522346527331 212 0.668690343663392 7 6 1 -6.77235337206464 LTS-039 chr11 36509358 36614059 104702 * c(RAG1, RAG2, TRAF6) NA 0 NA 0.996415151911965 246 0.493313831537554 5 NA NA -5.76579645577179 LTS-039 chr11 36614060 40137543 3523484 * c(C11orf74, LRRC4C, RAG1, RAG2) 0.41 1 NA 0.632275500306074 105 0.439716919427453 3 3 0 -5.91218754602079 LTS-039 chr11 40137544 43380461 3242918 * c(LOC100507205, HNRNPKP3, TTC17, LRRC4C, API5) 0.328 1 NA 0.687431894133336 173 0.337674546381714 3 3 0 -5.78414693274677 LTS-039 chr11 43380462 47446092 4065631 * c(MIR670, MIR3160-2, MIR3160-1, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, ALX4, SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, ARFGAP2, ACCS, DGKZ, CHST1, MADD, NA NA NA NA NA NA NA NA NA LTS-039 TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.301254534659099 62 0.0792209689722832 0.906530856652145 4390 0.398665557364696 4 3 1 -6.73849605943973 LTS-039 NA NA NA NA LTS-039 chr11 47446093 47603399 157307 * c(CELF1, PTPMT1, NDUFS3, KBTBD4, PSMC3, RAPSN) 0.305012201754476 7 0.0764753306006335 1.32290008270674 302 0.606065190555592 7 5 2 -6.7383103036302 LTS-039 chr11 47603400 47603666 267 * NDUFS3 NA 0 NA 0.99 1 NA NA NA NA NA LTS-039 chr11 47603667 48189677 586011 * c(C1QTNF4, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, PTPRJ, AGBL2) 0.305860627497819 19 0.071022070533912 0.864998635610455 858 0.412206580776137 4 3 1 -6.74312780395399 LTS-039 chr11 48189678 48238281 48604 * PTPRJ NA 0 NA 0.482 1 NA NA NA NA NA LTS-039 chr11 48238282 48346419 108138 * c(OR4X2, OR4B1, OR4S1, OR4X1) 0.31031765675334 9 0.0533900739838409 0.463179631628419 103 0.467118843643872 4 3 1 -6.89203838656983 LTS-039 chr11 48346420 48346423 4 * character(0) 0.391 1 NA 1.108 1 NA NA NA NA NA LTS-039 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.370410944300396 108 0.0608376625438603 0.857042708741149 186 0.484185690857979 3 2 1 -6.73687501367236 LTS-039 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.608 1 NA NA NA NA NA LTS-039 chr11 48388749 51516257 3127509 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) 0.346048984846918 22 0.0864546023552145 0.560846862952917 476 0.356908920914558 2 1 1 -7.30359526146047 LTS-039 chr11 51516258 51527703 11446 * character(0) NA 0 NA 0.525093870944909 6 0.020454828280873 2 NA NA -5.76631717466073 LTS-039 chr11 55035776 55135876 100101 * c(TRIM51HP, TRIM48, OR4A16, OR4A15) 0.392 1 NA 0.369729366927364 35 0.268872019788616 1 1 0 -5.76682536294349 LTS-039 chr11 55135877 56854968 1719092 * c(OR5I1, OR8I2, OR4C16, OR4C11, OR4S2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5AK4P, OR5L2, OR10AG1, OR5J2, OR9G4, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR5AK2, OR8U8, OR9G9, OR8J3, OR4P4, OR4C15, OR4A15, TRIM51) 0.318198514567674 76 0.0658822820469912 0.513598440370454 1187 0.264214346473106 2 1 1 -8.12721421567648 LTS-039 chr11 56854969 56949188 94220 * character(0) NA 0 NA 1.643 1 NA NA NA NA NA LTS-039 chr11 56949189 57068374 119186 * c(APLNR, LRRC55, TNKS1BP1) 0.26609123115853 6 0.147022107181199 0.954431159828214 156 0.621228849704794 5 4 1 -6.74503745658586 LTS-039 chr11 57068375 57114026 45652 * c(P2RX3, SSRP1, TNKS1BP1) 0.32650802251117 15 0.0928927697222268 1.41549539625478 253 0.528495104732491 7 5 2 -6.74979210070818 LTS-039 chr11 57114027 57176725 62699 * c(PRG3, SLC43A3, P2RX3, PRG2) 0.36896419399013 7 0.0890933165148714 0.64168012956016 175 0.231629925663879 3 2 1 -6.74080544744269 LTS-039 chr11 57176726 57581882 405157 * c(TMX2-CTNND1, CLP1, CTNND1, SMTNL1, YPEL4, MED19, ZDHHC5, TIMM10, SELENOH, SLC43A3, RTN4RL2, MIR130A, TMX2, PRG2, BTBD18, SERPING1, SLC43A1, UBE2L6) 0.300949584975982 13 0.0578901479594692 1.06064672891895 935 0.437068302334738 4 3 1 -6.77314163072451 LTS-039 chr11 57581883 58322500 740618 * c(TMX2-CTNND1, CTNND1, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, OR5B2, OR5B12, OR5B3, OR10W1, LPXN) 0.33919627001042 31 0.0592907905956934 0.521681317542984 511 0.266933029444961 3 2 1 -7.44855238093143 LTS-039 chr11 58322501 58331589 9089 * LPXN NA 0 NA 1.079 1 NA NA NA NA NA LTS-039 chr11 58331590 58384907 53318 * c(ZFP91-CNTF, ZFP91, LPXN) 0.343 1 NA 1.22007371068184 103 0.561557705270574 6 6 0 -5.7644805859034 LTS-039 chr11 58384908 58920928 536021 * c(GLYAT, CNTF, GLYATL2, LOC283194, FAM111B, ZFP91-CNTF, FAM111A, ZFP91, GLYATL1) 0.299021416920414 7 0.0326233921333407 0.653776217584107 402 0.267976816497661 4 3 1 -7.13735630452626 LTS-039 chr11 58920929 58921041 113 * FAM111A NA 0 NA 1.133 1 NA NA NA NA NA LTS-039 chr11 58921042 58978122 57081 * c(MPEG1, DTX4, FAM111A) 0.305152917002741 4 0.0610484780045061 1.0778638961191 195 0.393789951805874 4 3 1 -6.75022291537572 LTS-039 chr11 58978123 58978229 107 * MPEG1 NA 0 NA 0.512 1 NA NA NA NA NA LTS-039 chr11 58978230 59283334 305105 * c(MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, OR5AN1, OR4D10, OR4D9) 0.309457696614573 12 0.0659025911110596 0.497417214250177 213 0.184018865994493 3 2 1 -7.83934459878798 LTS-039 chr11 59283335 59283343 9 * character(0) NA 0 NA 0.704 1 NA NA NA NA NA LTS-039 chr11 59283344 59596788 313445 * c(MIR3162, PATL1, GIF, OR10V1, OSBP, MRPL16, STX3, OR10V2P) NA 0 NA 0.937769043943309 424 0.548630415955068 4 NA NA -5.76599381243979 LTS-039 chr11 59596789 60658462 1061674 * c(PTGDR2, OOSP2, MS4A15, MS4A2, ZP1, MS4A6E, GIF, PRPF19, LINC00301, MS4A10, MS4A13, MS4A4A, MS4A12, MS4A7, MS4A6A, MS4A5, TCN1, CCDC86, MS4A8, MS4A14, MS4A1, MS4A3) 0.308208329246195 38 0.0945947108310605 0.645705359961379 1224 0.330561911113725 3 2 1 -7.04142859222816 LTS-039 chr11 60658463 60787888 129426 * c(PRPF19, SLC15A3, TMEM132A, TMEM109, CD6) 0.351912879623019 4 0.0289597421719646 1.07400170657157 405 0.449411066860015 6 4 2 -6.74842065876752 LTS-039 chr11 60787889 60869766 81878 * character(0) NA 0 NA 0.693 1 NA NA NA NA NA LTS-039 chr11 60869767 61097032 227266 * c(DDB1, VWCE, PGA5, VPS37C, PGA3, PGA4, CD5) 0.332184798247764 7 0.0361517963724125 0.811073383070848 456 0.331853193139376 6 4 2 -7.18593856505638 LTS-039 chr11 61097033 61097359 327 * DDB1 NA 0 NA 2.586 1 NA NA NA NA NA LTS-039 chr11 61097360 61105549 8190 * c(DDB1, TKFC) 0.266 2 0 1.66198490731655 55 0.582531670213171 0 0 0 -Inf LTS-039 chr11 61105550 61106535 986 * c(DDB1, TKFC) NA 0 NA 0.921 1 NA NA NA NA NA LTS-039 chr11 61106536 61121637 15102 * c(DDB1, CYB561A3, TKFC) NA 0 NA 0.767281939922365 191 0.406141781940434 3 NA NA -5.76472594181833 LTS-039 chr11 61121638 61121777 140 * CYB561A3 NA 0 NA 2.301 1 NA NA NA NA NA LTS-039 chr11 61121778 61283464 161687 * c(MIR4488, CYB561A3, PPP1R32, LRRC10B, TMEM216, TMEM138, SDHAF2, CPSF7, SYT7) 0.276 1 NA 1.21198742768042 457 0.595059649842684 6 6 0 -5.76470852585834 LTS-039 chr11 61283465 61555236 271772 * c(RPLP0P2, DKFZP434K028, MYRF, DAGLA, SYT7) 0.286587211832267 10 0.111695021275694 0.78507546454645 510 0.352484168168268 4 3 1 -6.76003245968547 LTS-039 chr11 61555237 61730851 175615 * c(MIR1908, FEN1, FADS1, FADS3, RAB3IL1, MIR611, BEST1, MYRF, TMEM258, FADS2) 0.303337213375968 22 0.0511663106153975 1.00197602236455 660 0.423000943731193 4 3 1 -6.74866001786753 LTS-039 chr11 61730852 61736056 5205 * c(FTH1, BEST1) NA 0 NA 2.28818478103408 57 0.678063747825592 12 NA NA -5.76441297434596 LTS-039 chr11 61736057 61895547 159491 * INCENP NA 0 NA 0.989 1 NA NA NA NA NA LTS-039 chr11 61895548 62327133 431586 * c(SCGB1D2, SCGB1D1, EEF1G, INCENP, SCGB1D4, SCGB2A1, SCGB2A2, SCGB1A1, AHNAK, ASRGL1) 0.297851121719902 15 0.0990677017186203 0.936511140223007 664 0.399974257244654 4 3 1 -6.73692025968472 LTS-039 chr11 62327134 62327194 61 * EEF1G NA 0 NA 1.443 1 NA NA NA NA NA LTS-039 chr11 62327195 62594860 267666 * c(HNRNPUL2-BSCL2, NXF1, TAF6L, EEF1G, LRRN4CL, HNRNPUL2, GANAB, EML3, B3GAT3, BSCL2, GNG3, TTC9C, TMEM179B, UBXN1, POLR2G, ROM1, TUT1, STX5, SNORA57, METTL12, TMEM223, LBHD1, UQCC3, ZBTB3, INTS5, MTA2) 0.291578580573001 9 0.0405774294131328 1.43210496673015 1604 0.694557799758251 11 8 3 -6.78845281012319 LTS-039 chr11 62594861 62594970 110 * STX5 NA 0 NA 1.891 1 NA NA NA NA NA LTS-039 chr11 62594971 62652786 57816 * c(SNHG1, WDR74, SLC3A2, STX5, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22) 0.197 1 NA 1.99742584602849 171 0.817698679913176 10 10 0 -5.76441703502955 LTS-039 chr11 62652787 63177453 524667 * c(CHRM1, SLC22A9, SLC22A24, SLC22A25, SLC22A10, SLC3A2, SLC22A6, SLC22A8) 0.193162521522899 5 0.180380708502877 0.653282233470203 556 0.29935700663004 3 3 0 -6.85682701415111 LTS-039 chr11 63177454 63177730 277 * SLC22A9 NA 0 NA 2.297 1 NA NA NA NA NA LTS-039 chr11 63177731 63769144 591414 * c(RTN3, PLA2G16, HRASLS5, COX8A, C11orf84, MARK2, ATL3, RCOR2, MACROD1, HRASLS2, OTUB1, RARRES3, C11orf95, NAA40, LGALS12) 0.305014304359309 14 0.0408218455844794 0.976788725826869 1148 0.508215314452506 4 3 1 -6.76435193908171 LTS-039 chr11 63769145 63884027 114883 * c(FLRT1, MACROD1) 0.41 1 NA 0.929489827918352 21 0.246344068327208 4 4 0 -5.76636419574312 LTS-039 chr11 63884028 63886528 2501 * c(FLRT1, MACROD1) 0.446365472068841 3 0.0397156560229506 0.96478225708852 57 0.187863744082918 4 2 2 -6.82528232128126 LTS-039 chr11 63886529 63886539 11 * c(FLRT1, MACROD1) 0.412 1 NA 3.455 1 NA NA NA NA NA LTS-039 chr11 63886540 63992270 105731 * c(STIP1, FLRT1, MACROD1, FERMT3, TRPT1) 0.44589562811238 8 0.0508471097647504 1.53058154725851 224 0.551066123816285 8 4 4 -6.78676303436132 LTS-039 chr11 63992271 64019292 27022 * c(FKBP2, PPP1R14B, DNAJC4, PLCB3, VEGFB, TRPT1, NUDT22) 0.475358596940626 3 0.0375410886008029 2.23555924995741 200 0.873886593323155 12 6 6 -7.48089310191133 LTS-039 chr11 64019293 64021772 2480 * PLCB3 NA 0 NA 1.318 1 NA NA NA NA NA LTS-039 chr11 64021773 64068151 46379 * c(TEX40, KCNK4, PLCB3, GPR137, BAD) 0.378749822223106 9 0.204790136481228 1.46739889426978 316 0.752727906067414 8 5 3 -6.73398304873413 LTS-039 chr11 64068152 64109856 41705 * c(ESRRA, PRDX5, TEX40, CCDC88B, KCNK4, TRMT112) 0.485 1 NA 2.41797540702351 175 0.998648294919594 12 12 0 -5.76444038577724 LTS-039 chr11 64109857 64109864 8 * CCDC88B NA 0 NA 1.789 1 NA NA NA NA NA LTS-039 chr11 64109865 64219060 109196 * c(MIR1237, LOC100996455, CCDC88B, RPS6KA4) 0.46652720216615 11 0.0363630681773792 1.44010860496787 292 0.391480237901747 8 4 4 -7.27100192038861 LTS-039 chr11 64219061 64527480 308420 * c(LOC100996455, RASGRP2, SLC22A12, SLC22A11, PYGM, NRXN2) 0.438352801565531 7 0.0475900149591227 0.963167021000957 622 0.341067900860511 4 2 2 -6.75796190946592 LTS-039 chr11 64527481 64527594 114 * PYGM NA 0 NA 1.545 1 NA NA NA NA NA LTS-039 chr11 64527595 64556691 29097 * c(PYGM, MAP4K2, SF1) NA 0 NA 1.64067481516754 104 0.839916384890287 8 NA NA -5.76441699267635 LTS-039 chr11 64556692 64570649 13958 * MAP4K2 NA 0 NA 0.750072041647076 121 0.21714776455882 3 NA NA -5.76491162731695 LTS-039 chr11 64570650 64571002 353 * c(MEN1, MAP4K2) NA 0 NA 1.793 1 NA NA NA NA NA LTS-039 chr11 64571003 64591102 20100 * MEN1 NA 0 NA 1.45876084842996 80 0.418986649737468 7 NA NA -5.76443173574222 LTS-039 chr11 64591103 64591679 577 * CDC42BPG 0.402 1 NA 0.664110570985689 15 0.190534136424046 3 3 0 -5.76445490680039 LTS-039 chr11 64591680 64591972 293 * CDC42BPG 0.286 1 NA 0.620951640335375 7 0.302570023379083 3 3 0 -5.76444541365014 LTS-039 chr11 64591973 64764512 172540 * c(EHD1, BATF2, GPHA2, ATG2A, MAJIN, MIR192, MIR194-2, PPP2R5B, CDC42BPG) 0.264497511222325 10 0.102182244598125 0.768431934276649 750 0.312978744823303 4 3 1 -6.81850874292524 LTS-039 chr11 64764513 64877021 112509 * c(NAALADL1, TMEM262, ARL2-SNX15, CDCA5, BATF2, SAC3D1, ARL2, VPS51, ZFPL1) 0.321112440725142 9 0.0371015872676329 1.13658103221287 466 0.54268166394704 7 5 2 -6.78985854731941 LTS-039 chr11 64877022 64877167 146 * VPS51 NA 0 NA 1.953 1 NA NA NA NA NA LTS-039 chr11 64877168 64893248 16081 * c(FAU, TM7SF2, VPS51, MRPL49, ZNHIT2) 0.305259895781026 3 0.0476235235991626 1.64696905378266 171 0.567361927939778 7 5 2 -6.74221309461799 LTS-039 chr11 64893249 65233774 340526 * c(CDC42EP2, TIGD3, POLA2, SLC25A45, NEAT1, SPDYC, SLC22A20, DPF2, MRPL49, CAPN1, FRMD8, SYVN1) 0.305888830375808 16 0.0392545114180099 1.09909517663901 865 0.439743324012658 4 3 1 -6.80575622015331 LTS-039 chr11 65233775 65265224 31450 * character(0) NA 0 NA 3.63 1 NA NA NA NA NA LTS-039 chr11 65265225 65273904 8680 * MALAT1 0.296 1 NA 3.60379689735821 182 1.07016909486181 19 19 0 -5.76441014366628 LTS-039 chr11 65273905 65292578 18674 * c(MALAT1, SCYL1) NA 0 NA 1.549 1 NA NA NA NA NA LTS-039 chr11 65292579 65343955 51377 * c(SSSCA1, FAM89B, SSSCA1-AS1, EHBP1L1, LTBP3, SCYL1) 0.293051619249975 5 0.0276622486432322 1.39713561017802 340 0.588778690053852 11 8 3 -6.75434576957158 LTS-039 chr11 65343956 65346520 2565 * EHBP1L1 NA 0 NA 1.094 1 NA NA NA NA NA LTS-039 chr11 65346521 65408368 61848 * c(MIR4690, KCNK7, EHBP1L1, PCNX3, MAP3K11, SIPA1) 0.252221151373633 6 0.128936676964573 0.996020841049083 499 0.323802300304767 5 4 1 -6.73572952643241 LTS-039 chr11 65408369 65408412 44 * SIPA1 NA 0 NA 1.737 1 NA NA NA NA NA LTS-039 chr11 65408413 65482104 73692 * c(MIR4489, KAT5, RELA, SIPA1) NA 0 NA 1.97766930716032 234 0.655229224832762 10 NA NA -5.76441039584399 LTS-039 chr11 65482105 65621113 139009 * c(KAT5, SNX32, OVOL1, RNASEH2C, AP5B1) 0.225338929804613 7 0.0959910710133277 1.23025085358864 311 0.470522045158114 6 5 1 -6.74484172404228 LTS-039 chr11 65621114 65689075 67962 * c(DRAP1, CFL1, CCDC85B, CTSW, SNX32, EFEMP2, MUS81, FOSL1, C11orf68, FIBP) 0.224312009620215 18 0.0473933960265363 1.63514922315121 489 0.791478764476545 10 8 2 -6.73598994741054 LTS-039 chr11 65689076 65713073 23998 * character(0) NA 0 NA 0.76 1 NA NA NA NA NA LTS-039 chr11 65713074 66056688 343615 * c(YIF1A, SF3B2, CATSPER1, CST6, TSGA10IP, CNIH2, PACS1, KLC2, RAB1B, EIF1AD, BANF1, GAL3ST3, SART1) 0.278739251368757 8 0.0574008461858982 1.03253485491054 997 0.422080382241729 4 3 1 -6.82163014870067 LTS-039 chr11 66056689 66059540 2852 * TMEM151A NA 0 NA 0.825 1 NA NA NA NA NA LTS-039 chr11 66059541 66109798 50258 * c(TMEM151A, BRMS1, CD248, RIN1) 0.325635886471882 8 0.0615211926319471 0.78130840529093 249 0.3066867058135 4 3 1 -6.86104755950563 LTS-039 chr11 66109799 66112820 3022 * BRMS1 NA 0 NA 1.695 1 NA NA NA NA NA LTS-039 chr11 66112821 66139354 26534 * c(B4GAT1, SLC29A2) 0.249089933906455 3 0.0915223105768934 1.52392378097974 132 0.577928630862876 9 7 2 -6.73431806594113 LTS-039 chr11 66139355 66188444 49090 * SLC29A2 NA 0 NA 1.012 1 NA NA NA NA NA LTS-039 chr11 66188445 66335574 147130 * c(DPP3, PELI3, ZDHHC24, NPAS4, BBS1, MRPL11, CTSF, ACTN3) 0.306184308565741 17 0.0744710267387889 0.869542047800482 720 0.424005657633417 4 3 1 -6.74137605971934 LTS-039 chr11 66335575 66335877 303 * CTSF 0 1 NA 2.303 1 NA NA NA NA NA LTS-039 chr11 66335878 66417486 81609 * c(RBM14-RBM4, RBM14, CCDC87, RBM4, CTSF, CCS) 0.315676750840628 2 0.0197989898732233 1.48577646683575 286 0.658136780837953 10 7 3 -6.74485696314116 LTS-039 chr11 66417487 66432783 15297 * c(RBM4, RBM4B) NA 0 NA 1.029 1 NA NA NA NA NA LTS-039 chr11 66432784 66999296 566513 * c(KDM2A, C11orf86, RHOD, PC, RBM4, SPTBN2, LRFN4, C11orf80, RBM4B, SYT12, RCE1) 0.309277443967549 2 0.0169705627484772 0.986119613446977 853 0.388342470058663 4 3 1 -7.02894851561745 LTS-039 chr11 66999297 66999300 4 * KDM2A NA 0 NA 1.115 1 NA NA NA NA NA LTS-039 chr11 66999301 67933182 933882 * c(LOC100130987, MIR4691, CDK2AP2, TCIRG1, CHKA, GRK2, ALDH3B1, ALDH3B2, KDM2A, CLCF1, NUDT8, GSTP1, ANKRD13D, TBX10, TBC1D10C, GPR152, DOC2GP, NDUFV1, NDUFS8, KMT5B, CABP2, SSH3, PPP1CA, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, AIP, ACY3, PITPNM1) 0.279028050939663 18 0.0670064868579584 1.21460491952092 1994 0.535349552843264 8 6 2 -6.8877321256757 LTS-039 chr11 67933183 68856011 922829 * c(MRGPRD, MRGPRF, CPT1A, MRPL21, TPCN2, IGHMBP2, LRP5, GAL, KMT5B, C11orf24, PPP6R3, TESMIN) 0.303752681780492 23 0.0554968574404961 0.880740507012816 1107 0.394790116419203 4 3 1 -6.74103501955462 LTS-039 chr11 68856012 69062621 206610 * c(TPCN2, MYEOV) NA 0 NA 1.616 1 NA NA NA NA NA LTS-039 chr11 69062622 69472065 409444 * c(ORAOV1, MYEOV, CCND1) NA 0 NA 1.96733033642094 144 0.927352951182253 10 NA NA -5.76441393837207 LTS-039 chr11 69472066 70178175 706110 * c(MIR548K, ORAOV1, FGF3, FGF4, ANO1, PPFIA1, FADD, FGF19) 0.216109531432323 9 0.085318683638332 1.24319522826839 514 0.625658065613632 6 5 1 -6.73453308450363 LTS-039 chr11 70178176 70179033 858 * PPFIA1 NA 0 NA 0.846 1 NA NA NA NA NA LTS-039 chr11 70179034 71634523 1455490 * c(LOC100129216, LOC100133315, MIR3664, SHANK2-AS1, DHCR7, CTTN, SHANK2-AS3, SHANK2, DEFB108B, ALG1L9P, KRTAP5-9, KRTAP5-10, FLJ42102, KRTAP5-7, KRTAP5-11, NADSYN1, FAM86C1, KRTAP5-8, PPFIA1) 0.305209596110864 26 0.113323716032367 0.878814280817738 1051 0.432500402983562 4 3 1 -6.73675399669344 LTS-039 chr11 71634524 71639517 4994 * LOC100133315 NA 0 NA 1.693 1 NA NA NA NA NA LTS-039 chr11 71639518 71810142 170625 * c(MIR3165, IL18BP, LRTOMT, NUMA1, LAMTOR1, RNF121) 0.231933006568448 6 0.0271882327487463 1.26906389627848 498 0.491595570291668 10 8 2 -6.84440393396277 LTS-039 chr11 71810143 71850130 39988 * c(LRTOMT, FOLR3, ANAPC15, LAMTOR1) 0.188953773120952 6 0.0125962957517941 2.17713746724769 132 1.01428594099582 12 10 2 -6.74853178596433 LTS-039 chr11 71850131 71850156 26 * FOLR3 NA 0 NA 1.154 1 NA NA NA NA NA LTS-039 chr11 71850157 72145770 295614 * c(FOLR1, FOLR2, FOLR3, INPPL1, PHOX2A, CLPB) 0.215361546106165 5 0.0177679486716953 1.3806820715989 403 0.719478384206431 6 5 1 -6.75860097693955 LTS-039 chr11 72145771 72281725 135955 * character(0) NA 0 NA 0.813 1 NA NA NA NA NA LTS-039 chr11 72281726 72425438 143713 * c(ARAP1, MIR139, PDE2A) 0.304 1 NA 0.687602729503454 420 0.28622034600002 3 3 0 -5.76561354240944 LTS-039 chr11 72425439 72437703 12265 * ARAP1 NA 0 NA 1.162 1 NA NA NA NA NA LTS-039 chr11 72437704 73179426 741723 * c(MIR4692, STARD10, ARAP1, FAM168A, P2RY2, P2RY6, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.265779951439924 12 0.0506894884805937 1.15227732997182 794 0.461966911759298 5 4 1 -6.82023499219019 LTS-039 chr11 73179427 73179467 41 * FAM168A NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr11 73179468 73998441 818974 * c(FAM168A, C2CD3, P4HA3, DNAJB13, COA4, PPME1, MRPL48, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1) 0.259746215034908 17 0.108959585060107 0.971097917581757 980 0.514803058429469 5 4 1 -6.75863367891712 LTS-039 chr11 73998442 74000025 1584 * P4HA3 NA 0 NA 1.268 1 NA NA NA NA NA LTS-039 chr11 74000026 74414576 414551 * c(KCNE3, POLD3, CHRDL2, P4HA3, PGM2L1, LIPT2) 0.291529016610967 23 0.0379592562932932 1.32546541245013 509 0.727377732310435 4 3 1 -6.8211049781907 LTS-039 chr11 74414577 74415500 924 * CHRDL2 NA 0 NA 0.794 1 NA NA NA NA NA LTS-039 chr11 74415501 74701228 285728 * c(MIR4696, NEU3, XRRA1, RNF169, CHRDL2, SPCS2) 0.336630349551907 12 0.0641943073092084 0.915846959652044 463 0.434618789372892 6 4 2 -6.86886206896173 LTS-039 chr11 74701229 74705511 4283 * NEU3 NA 0 NA 0.701 1 NA NA NA NA NA LTS-039 chr11 74705512 75046237 340726 * c(TPBGL, NEU3, SLCO2B1, OR2AT4, ARRB1, MIR326) 0.327484148460404 4 0.0484217581947069 0.64442077416923 376 0.250356138897547 3 2 1 -7.21636689095075 LTS-039 chr11 75046238 75141710 95473 * c(SNORD15B, KLHL35, ARRB1, SNORD15A, RPS3) 0.331 1 NA 1.52930531203103 136 0.624157160629899 8 8 0 -5.76483328585802 LTS-039 chr11 75141711 75145667 3957 * character(0) NA 0 NA 0.848 1 NA NA NA NA NA LTS-039 chr11 75145668 76062812 917145 * c(LOC283214, MAP6, THAP12, UVRAG, WNT11, MOGAT2, GDPD5, DGAT2, SERPINH1) 0.312691825257346 23 0.0610029157600298 0.896765123018462 680 0.349323603735109 4 3 1 -6.76986248080312 LTS-039 chr11 76062813 76063761 949 * THAP12 NA 0 NA 1.09 1 NA NA NA NA NA LTS-039 chr11 76063762 76670058 606297 * c(TSKU, LRRC32, GUCY2EP, ACER3, THAP12, EMSY) 0.241509158429301 5 0.0141703916671347 1.23752574661187 655 0.527466837147338 5 4 1 -6.86781194980735 LTS-039 chr11 76670059 77044005 373947 * c(B3GNT6, GDPD4, MYO7A, OMP, PAK1, ACER3, CAPN5) 0.299303700372503 27 0.0674108676047495 0.782456288797926 762 0.448852249511987 4 3 1 -6.75239891542585 LTS-039 chr11 77044006 77047127 3122 * PAK1 NA 0 NA 1.237 1 NA NA NA NA NA LTS-039 chr11 77047128 77882701 835574 * c(KCTD21-AS1, NDUFC2-KCTD14, CLNS1A, AQP11, KCTD21, AAMDC, NDUFC2, PAK1, RSF1, KCTD14, THRSP, ALG8, INTS4) 0.28272529545411 21 0.0871231749825936 1.02141055489583 847 0.559365618845766 4 3 1 -6.77977592653841 LTS-039 chr11 77882702 77882953 252 * c(KCTD21-AS1, KCTD21) NA 0 NA 0.691 1 NA NA NA NA NA LTS-039 chr11 77882954 82752690 4869737 * c(MIR708, KCTD21-AS1, SNORA70E, MIR4300, MIR5579, DDIAS, FAM181B, TENM4, RAB30, KCTD21, PRCP, USP35, NARS2, GAB2) 0.296764918579905 33 0.0492765272352226 0.742770064299192 1280 0.334814584180965 4 3 1 -7.49760445216424 LTS-039 chr11 82752691 82868060 115370 * c(RAB30-AS1, RAB30) NA 0 NA 1.788 1 NA NA NA NA NA LTS-039 chr11 82868061 82898522 30462 * PCF11 NA 0 NA 1.52156952747408 199 0.787866787289567 8 NA NA -5.7645116482659 LTS-039 chr11 82898523 82904718 6196 * character(0) NA 0 NA 0.87 1 NA NA NA NA NA LTS-039 chr11 82904719 83168574 263856 * c(DLG2, ANKRD42, CCDC90B) 0 1 NA 0.875329444329415 319 0.51443092641528 4 4 0 -5.76461601221233 LTS-039 chr11 83168575 83168673 99 * DLG2 NA 0 NA 0.644 1 NA NA NA NA NA LTS-039 chr11 83168674 85309840 2141167 * DLG2 0.218855130657934 3 0.200185747078391 0.58875323606104 308 0.291499198872726 2 2 0 -6.94251944847693 LTS-039 chr11 85309841 85339580 29740 * DLG2 NA 0 NA 1.766 1 NA NA NA NA NA LTS-039 chr11 85339581 85395431 55851 * c(CCDC89, TMEM126B, CREBZF, TMEM126A) 0.285200255462014 5 0.0851158034679812 1.19791270079768 181 0.592694308923724 8 6 2 -6.74799241177873 LTS-039 chr11 85395432 85445518 50087 * c(CCDC89, SYTL2) 0.299585085903498 11 0.071177882162164 0.563053955726851 255 0.28475082422617 4 3 1 -6.8108580129951 LTS-039 chr11 85445519 88241492 2795974 * c(LOC100506368, GRM5-AS1, CTSC, ME3, PRSS23, CCDC83, RAB38, GRM5, HIKESHI, SYTL2, CCDC81, TMEM135, PICALM, FZD4, OR7E2P, EED) 0.294788684444074 33 0.11271316505075 0.860450934470648 1235 0.482090837421835 4 3 1 -6.74257557002061 LTS-039 chr11 88241493 88241576 84 * c(GRM5-AS1, GRM5) NA 0 NA 0.48 1 NA NA NA NA NA LTS-039 chr11 88241577 89771971 1530395 * c(GRM5-AS1, TRIM64, FOLH1B, GRM5, TRIM77, NOX4, TRIM49, TRIM64B, TRIM49C, TYR) 0.36132103799116 11 0.0786114726764716 0.557928502050981 538 0.368888400722914 3 2 1 -7.11589762575979 LTS-039 chr11 89771972 89774176 2205 * TRIM49C NA 0 NA 1.287 1 NA NA NA NA NA LTS-039 chr11 89774177 93460345 3686169 * c(NAALAD2, MIR4490, SLC36A4, FAT3, DEUP1, CHORDC1, MTNR1B, SMCO4, SCARNA9, TRIM49C, UBTFL1, CEP295) 0.301501493005117 27 0.0736526845995307 0.819343735939485 1248 0.407543909932691 4 3 1 -6.82867528055765 LTS-039 chr11 93460346 93460348 3 * CEP295 NA 0 NA 1.133 1 NA NA NA NA NA LTS-039 chr11 93460349 93482886 22538 * c(MIR1304, C11orf54, SNORA8, SNORA18, SNORA40, SNORD5, TAF1D, CEP295) 0.1554 2 0.183140656327316 1.52822848666684 150 0.695665557873633 8 7 1 -6.73460574404263 LTS-039 chr11 93482887 94038985 556099 * c(PANX1, C11orf54, HEPHL1, VSTM5, IZUMO1R, MED17) 0.268618598238647 4 0.0151299922890485 0.948931272332714 534 0.44859038906274 8 6 2 -7.31924272500103 LTS-039 chr11 94038986 94134626 95641 * c(GPR83, IZUMO1R) NA 0 NA 0.534665127657254 107 0.206906100790122 2 NA NA -5.76448122362938 LTS-039 chr11 94134627 94152908 18282 * MRE11A NA 0 NA 0.996 1 NA NA NA NA NA LTS-039 chr11 94152909 94300615 147707 * c(PIWIL4, FUT4, MRE11A, ANKRD49, C11orf97) NA 0 NA 1.16579103139448 346 0.537247038050882 6 NA NA -5.76599545294311 LTS-039 chr11 94300616 94730388 429773 * c(PIWIL4, AMOTL1, CWC15, KDM4D) 0.275480202880216 3 0.0244404037064311 0.863600352011783 391 0.400478606384188 4 3 1 -7.18830904571874 LTS-039 chr11 94730389 94783181 52793 * c(KDM4E, KDM4D) NA 0 NA 0.508296707262264 105 0.173246369069035 2 NA NA -5.76638746132862 LTS-039 chr11 94783182 94800337 17156 * character(0) NA 0 NA 2.108 1 NA NA NA NA NA LTS-039 chr11 94800338 96126443 1326106 * c(MIR1260B, FAM76B, SESN3, ENDOD1, CCDC82, MAML2, JRKL, MTMR2, CEP57) 0.294003169242758 36 0.0440737117054153 1.05425378394999 1061 0.525982126468701 4 3 1 -6.81650014850401 LTS-039 chr11 99426843 100227572 800730 * CNTN5 0.241335081381216 5 0.178918137705488 0.664113449042336 173 0.447878774325669 2 2 0 -6.97226793970735 LTS-039 chr11 100227573 100962632 735060 * c(ARHGAP42, PGR, CNTN5, TMEM133) 0.281884262309004 11 0.0782199695497488 0.965843685268805 450 0.492635350937002 4 3 1 -6.76859761037643 LTS-039 chr11 100962633 100996733 34101 * PGR NA 0 NA 0.284 1 NA NA NA NA NA LTS-039 chr11 100996734 101869775 873042 * c(MIR3920, LOC101054525, ANGPTL5, PGR, CEP126, TRPC6) 0.241324979880849 6 0.138436146532135 0.614282598424912 398 0.383453577208777 2 2 0 -7.00804355861114 LTS-039 chr11 101869776 102487822 618047 * c(YAP1, TMEM123, BIRC2, BIRC3, MMP7, CEP126, C11orf70, MMP20) 0.235455100004781 12 0.145969771673536 0.997264783595775 693 0.600428582077152 5 4 1 -6.74255664073587 LTS-039 chr11 102487823 102495845 8023 * MMP20 NA 0 NA 0.645 1 NA NA NA NA NA LTS-039 chr11 102495846 102933229 437384 * c(WTAPP1, MMP1, MMP3, MMP8, MMP10, MMP12, MMP13, MMP27, DCUN1D5, MMP20) 0.320431705796107 11 0.0621212889873878 0.696605116428737 540 0.317895180563662 4 3 1 -6.96758307212 LTS-039 chr11 102933230 102934934 1705 * DCUN1D5 NA 0 NA 0.98 1 NA NA NA NA NA LTS-039 chr11 102934935 103270607 335673 * c(DYNC2H1, DCUN1D5) 0.301489604330855 15 0.127397503152628 0.967474235721745 431 0.419871105087618 4 3 1 -6.74118600750576 LTS-039 chr11 103270608 103270609 2 * DYNC2H1 NA 0 NA 0.678 1 NA NA NA NA NA LTS-039 chr11 103270610 105929935 2659326 * c(CASP12, MIR4693, CARD16, KBTBD3, GRIA4, DDI1, CARD17, CARD18, LOC643733, DYNC2H1, PDGFD, CASP1, CASP4, CASP5, MSANTD4) 0.343093890034199 14 0.0610809677017696 0.585244284205252 869 0.249172032151031 3 2 1 -7.70276913523355 LTS-039 chr11 105929936 105948134 18199 * KBTBD3 NA 0 NA 3.377 1 NA NA NA NA NA LTS-039 chr11 105948135 107578770 1630636 * c(KBTBD3, CWF19L2, GUCY1A2, ELMOD1, AASDHPPT, LOC643923, SLN, ALKBH8) 0.272488926867681 4 0.0564704937703458 0.79820008346206 581 0.450164987335641 4 3 1 -6.90771379232171 LTS-039 chr11 107578771 107643164 64394 * SLN NA 0 NA 2.944 1 NA NA NA NA NA LTS-039 chr11 107643165 110100901 2457737 * c(KDELC2, C11orf65, DDX10, EXPH5, ACAT1, C11orf87, ATM, NPAT, SLC35F2, RAB39A, RDX, CUL5, ZC3H12C) 0.26797723053501 43 0.0993374117500574 0.963018183306219 1918 0.532888178557844 4 3 1 -6.81634587416176 LTS-039 chr11 110100902 110101038 137 * RDX NA 0 NA 1.278 1 NA NA NA NA NA LTS-039 chr11 110101039 110335263 234225 * c(FDX1, RDX) NA 0 NA 1.44008879803988 163 0.730921819539461 7 NA NA -5.76441632273375 LTS-039 chr11 110335264 110335338 75 * FDX1 NA 0 NA 0.915 1 NA NA NA NA NA LTS-039 chr11 110335339 111598525 1263187 * c(LOC100132078, MIR4491, COLCA2, LAYN, FDX1, SIK2, C11orf53, COLCA1, C11orf88, MIR34B, MIR34C, POU2AF1, BTG4, PPP2R1B, ARHGAP20) 0.285123593011662 10 0.0498504429936853 0.866959662516927 823 0.335871807948189 4 3 1 -6.77546814536774 LTS-039 chr11 111598526 111598531 6 * PPP2R1B NA 0 NA 1.005 1 NA NA NA NA NA LTS-039 chr11 111598532 113073190 1474659 * c(HSPB2-C11orf52, PIH1D2, CRYAB, DLAT, TIMM8B, HSPB2, PLET1, IL18, NCAM1, PPP2R1B, C11orf57, TEX12, PTS, SDHD, C11orf1, ALG9, BCO2, DIXDC1, FDXACB1) 0.276523443233766 23 0.101118175297491 1.16242353060032 1286 0.496356818115372 5 4 1 -6.80516196050597 LTS-039 chr11 113073191 113074962 1772 * NCAM1 NA 0 NA 0.754 1 NA NA NA NA NA LTS-039 chr11 113074963 113233250 158288 * c(NCAM1-AS1, NCAM1, TTC12) 0.291656676113784 5 0.0550336260844222 0.846731198816069 267 0.298692287140133 4 3 1 -6.74277856719802 LTS-039 chr11 113233251 113295374 62124 * c(DRD2, ANKK1, TTC12) NA 0 NA 0.566629955155955 181 0.215793113355452 2 NA NA -5.76782639122518 LTS-039 chr11 113295375 113295493 119 * DRD2 NA 0 NA 0.8 1 NA NA NA NA NA LTS-039 chr11 113295494 114392587 1097094 * c(MIR4301, RBM7, NXPE1, DRD2, REXO2, HTR3A, NNMT, C11orf71, USP28, CLDN25, ZBTB16, TMPRSS5, HTR3B, ZW10) 0.284435102897388 25 0.0605376466892021 0.869812027955641 886 0.427679781889814 4 3 1 -6.76332938195903 LTS-039 chr11 114392588 114392685 98 * NXPE1 NA 0 NA 0.503 1 NA NA NA NA NA LTS-039 chr11 114392686 114579152 186467 * c(NXPE1, NXPE2, NXPE4) 0.375095751398799 17 0.0680017300817975 0.545100376442914 185 0.338076124883459 3 2 1 -6.80356967671432 LTS-039 chr11 114579153 116658360 2079208 * c(CADM1, LINC00900, BUD13, ZPR1) 0.305493643618227 4 0.0429961238563044 1.10629738085782 323 0.328094163420169 4 3 1 -7.24892365644498 LTS-039 chr11 116658361 116658575 215 * ZPR1 NA 0 NA 0.634 1 NA NA NA NA NA LTS-039 chr11 116658576 117038951 380376 * c(APOA5, SIK3, APOA1, APOA4, APOC3, PAFAH1B2, ZPR1) 0.32991501336751 7 0.0449364630816191 0.825685312645921 389 0.396886763564601 4 3 1 -7.03754652303657 LTS-039 chr11 117038952 117050198 11247 * c(PAFAH1B2, SIDT2) 0.22 1 NA 1.36452360386736 80 0.573482819398776 7 7 0 -5.76445949400358 LTS-039 chr11 117050199 117052057 1859 * SIDT2 NA 0 NA 0.803 1 NA NA NA NA NA LTS-039 chr11 117052058 117079768 27711 * c(LOC100652768, SIDT2, TAGLN, PCSK7) 0.303833411463933 8 0.05559483532025 0.642550708833724 263 0.23429808406828 4 3 1 -6.77300854204559 LTS-039 chr11 117079769 117089173 9405 * PCSK7 NA 0 NA 0.987 1 NA NA NA NA NA LTS-039 chr11 117089174 117772234 683061 * c(BACE1-AS, FXYD6-FXYD2, CEP164, BACE1, RNF214, FXYD2, FXYD6, DSCAML1, TMPRSS13, PCSK7) 0.275983353266624 27 0.137000103978167 0.908069210551581 965 0.431414628211999 4 3 1 -6.74860314275568 LTS-039 chr11 117772235 118339658 567424 * c(LOC100131626, TMPRSS4-AS1, MPZL2, ATP5L, JAML, MPZL3, IL10RA, KMT2A, TMPRSS4, SCN2B, SCN4B, TMPRSS13, CD3D, CD3E, CD3G, UBE4A) 0.244150468754553 44 0.0331566848543177 1.28968788184684 1353 1.17882869730019 5 4 1 -6.74777302898181 LTS-039 chr11 118339659 118342379 2721 * KMT2A NA 0 NA 0.837 1 NA NA NA NA NA LTS-039 chr11 118342380 118852066 509687 * c(MIR4492, TREH, TTC36, DDX6, PHLDB1, BCL9L, FOXR1, ARCN1, KMT2A, IFT46, CXCR5, UPK2, TMEM25) 0.314917043350704 6 0.153486698663652 0.933354751128925 1425 0.470682081377383 4 3 1 -6.74356544945016 LTS-039 chr11 118852067 118866912 14846 * character(0) NA 0 NA 1.472 1 NA NA NA NA NA LTS-039 chr11 118866913 118891029 24117 * c(MIR3656, CCDC84, TRAPPC4, RPS25, RPL23AP64) NA 0 NA 1.55593436655364 125 0.642146082465514 8 NA NA -5.76445658710407 LTS-039 chr11 118891030 118892412 1383 * TRAPPC4 NA 0 NA 0.915 1 NA NA NA NA NA LTS-039 chr11 118892413 118959331 66919 * c(HYOU1, SLC37A4, HMBS, TRAPPC4, VPS11) 0.326009798960017 9 0.0721664742106749 1.01401903042822 337 0.55202448557675 7 5 2 -6.77471381872434 LTS-039 chr11 118959332 118959419 88 * HMBS NA 0 NA 1.721 1 NA NA NA NA NA LTS-039 chr11 118959420 118981588 22169 * c(DPAGT1, H2AFX, HMBS, C2CD2L) 0.276415257671644 8 0.0711853716915009 1.76282690962981 186 0.65446774734603 8 6 2 -6.73327357282029 LTS-039 chr11 118981589 119024838 43250 * c(HINFP, ABCG4, C2CD2L) 0.325839829583462 2 0.0763675323681472 1.06190306014722 246 0.705783067599413 7 5 2 -6.76038011134478 LTS-039 chr11 119024839 119060718 35880 * c(ABCG4, NLRX1, PDZD3) 0.297 1 NA 0.640208754319573 271 0.258867803894959 3 3 0 -5.76796551000967 LTS-039 chr11 119060719 119288381 227663 * c(USP2-AS1, CCDC153, MCAM, RNF26, PDZD3, MFRP, CBL, USP2) 0.290049946401542 15 0.0518754919655387 1.03016835908077 699 0.376664976616532 4 3 1 -6.76556873404385 LTS-039 chr11 119288382 119370116 81735 * c(USP2-AS1, THY1) 0.359952114691137 3 0.0189032625050104 0.606616709204479 79 0.169673571130036 3 2 1 -6.97872502812931 LTS-039 chr11 119370117 120170502 800386 * c(USP2-AS1, OAF, TRIM29, POU2F3, NECTIN1, LOC649133) 0.279011518479798 12 0.140689508772999 1.17390941112524 473 0.645390547002779 5 4 1 -6.77229323567488 LTS-039 chr11 120170503 120171702 1200 * POU2F3 NA 0 NA 2.638 1 NA NA NA NA NA LTS-039 chr11 120171703 120278617 106915 * c(TMEM136, ARHGEF12, POU2F3) 0.314949703759074 6 0.0212759645296439 2.08838301086039 184 0.7599804204628 10 7 3 -6.73897168351217 LTS-039 chr11 120278618 120280029 1412 * ARHGEF12 NA 0 NA 1.194 1 NA NA NA NA NA LTS-039 chr11 120280030 120732688 452659 * c(ARHGEF12, GRIK4) 0.212943385674091 8 0.140643355944846 1.1027947519161 334 0.602951165555861 6 5 1 -6.74516516944116 LTS-039 chr11 120732689 121061901 329213 * c(TBCEL, GRIK4, TECTA) 0.298385844877772 6 0.156328393667519 0.770837051925388 540 0.352418031491718 4 3 1 -6.76660849463315 LTS-039 chr11 121061902 121970611 908710 * c(MIR100HG, MIR125B1, SC5D, SORL1) 0.20786493300713 8 0.0346799139066323 1.46368536789451 468 0.58119598370716 6 5 1 -6.78012583719414 LTS-039 chr11 121970612 121985989 15378 * MIR100HG NA 0 NA 0.943 1 NA NA NA NA NA LTS-039 chr11 121985990 123471323 1485334 * c(MIR4493, HSPA8, LOC341056, BSX, MIR100HG, MIRLET7A2, MIR100, BLID, CRTAM, GRAMD1B, CLMP, C11orf63, UBASH3B) 0.250363882757353 18 0.126937906183078 0.987956328709374 631 0.759189991899569 5 4 1 -6.74365184757305 LTS-039 chr11 123471324 123474089 2766 * GRAMD1B NA 0 NA 0.614 1 NA NA NA NA NA LTS-039 chr11 123474090 123624994 150905 * c(OR6X1, SCN3B, GRAMD1B, ZNF202) 0.342249845684049 10 0.0513983354680761 0.662557510348741 398 0.287164557101118 3 2 1 -6.92226710923419 LTS-039 chr11 123624995 124490028 865034 * c(PANX3, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, OR8G2, OR8B8, OR8B2, OR8D1, OR8D2, OR8B4, TMEM225, OR8D4, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, VWA5A) 0.337381640732265 34 0.0641202079653421 0.490658536887783 754 0.265779479368525 3 2 1 -7.76748759384219 LTS-039 chr11 124490029 125365492 875464 * c(PANX3, TMEM218, SLC37A2, HEPACAM, VSIG2, NRGN, SPA17, SIAE, ROBO4, PKNOX2, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM, FEZ1) 0.328651424423259 37 0.0866386649150266 0.780110291966672 1430 0.332254757938255 4 3 1 -6.89321194592164 LTS-039 chr11 125365493 125366377 885 * FEZ1 NA 0 NA 1.448 1 NA NA NA NA NA LTS-039 chr11 125366378 125369464 3087 * character(0) NA 0 NA 2.36883688666704 45 0.818798097978082 12 NA NA -5.76441069089198 LTS-039 chr11 125369465 125442301 72837 * EI24 NA 0 NA 0.915 1 NA NA NA NA NA LTS-039 chr11 125442302 125542255 99954 * c(CHEK1, STT3A, ACRV1, EI24) 0.268855727870799 12 0.0922652631702679 1.10265786358068 318 0.614113482907432 8 6 2 -6.75992728456244 LTS-039 chr11 125542256 125708941 166686 * c(PATE3, CHEK1, PATE1, PATE2, PATE4, ACRV1) 0.335953763422716 4 0.0674011622056079 0.599371750497624 203 1.21838890521963 6 4 2 -6.81636688250806 LTS-039 chr11 125708942 125708946 5 * PATE4 NA 0 NA 1.097 1 NA NA NA NA NA LTS-039 chr11 125708947 128396675 2687729 * c(MIR3167, KIRREL3-AS2, TIRAP, ETS1, HYLS1, KIRREL3-AS3, DCPS, DDX25, PATE4, ST3GAL4-AS1, CDON, FOXRED1, ST3GAL4, SRPRA, FAM118B, PUS3, KIRREL3, RPUSD4) 0.262846723449638 34 0.116178580499354 1.08366607172794 1310 0.573173298722763 5 4 1 -6.74393475035484 LTS-039 chr11 128396676 128396814 139 * ETS1 NA 0 NA 0.612 1 NA NA NA NA NA LTS-039 chr11 128396815 128712420 315606 * c(SENCR, ETS1, FLI1, KCNJ1) 0.381163657999327 5 0.0822240840630043 0.791679848342464 236 0.587550106877974 3 2 1 -6.74823561859692 LTS-039 chr11 128712421 128769479 57059 * c(C11orf45, KCNJ1, KCNJ5) NA 0 NA 2.417 1 NA NA NA NA NA LTS-039 chr11 128769480 128774591 5112 * c(C11orf45, KCNJ5) 0.324000982319219 2 0.0014142135623731 1.82421929333145 79 0.355733622611653 19 13 6 -6.75606965375547 LTS-039 chr11 128774592 128781076 6485 * c(C11orf45, KCNJ5) NA 0 NA 0.713 1 NA NA NA NA NA LTS-039 chr11 128781077 129245998 464922 * c(KCNJ5, TP53AIP1, BARX2, ARHGAP32) 0.28199121119408 26 0.0626991350694851 0.779516146202219 490 0.383191358504036 4 3 1 -6.80396191134026 LTS-039 chr11 129245999 129322078 76080 * BARX2 0.272747424749749 4 0.0420356991139674 1.69566285356496 67 1.17027072233134 8 6 2 -6.73746517669624 LTS-039 chr11 129322079 129722309 400231 * c(TMEM45B, BARX2) NA 0 NA 0.896 1 NA NA NA NA NA LTS-039 chr11 129722310 130346572 624263 * c(ADAMTS8, TMEM45B, ADAMTS15, ZBTB44, APLP2, LINC00167, NFRKB, PRDM10, ST14) 0.303706180623519 25 0.0714602920042546 0.999108910898209 1188 0.483410519128763 4 3 1 -6.75811789222575 LTS-039 chr11 130346573 130542778 196206 * character(0) NA 0 NA 2.787 1 NA NA NA NA NA LTS-039 chr11 130542779 130586769 43991 * C11orf44 0.439 1 NA 2.60923023697558 72 1.03326406694623 14 14 0 -5.76443682688869 LTS-039 chr11 130586770 130586805 36 * C11orf44 NA 0 NA 1.482 1 NA NA NA NA NA LTS-039 chr11 130586806 131240551 653746 * c(C11orf44, SNX19, NTM) 0.273250458289246 14 0.0543731510990448 1.2674742300084 209 0.527218595082123 8 6 2 -6.81610298298796 LTS-039 chr11 131240552 131240682 131 * NTM NA 0 NA 0.447 1 NA NA NA NA NA LTS-039 chr11 131240683 133939087 2698405 * c(LOC100128239, SPATA19, IGSF9B, MIR4697HG, OPCML, NTM, JAM3) 0.285610903216626 8 0.129734275127497 0.535607814665221 506 0.320742172256271 2 2 0 -7.24935236351567 LTS-039 chr11 133939088 133939982 895 * JAM3 NA 0 NA 0.875 1 NA NA NA NA NA LTS-039 chr11 133939983 134047318 107336 * c(NCAPD3, JAM3) 0.288873737035978 7 0.138737676415395 0.784356380382219 189 0.363977800327059 4 3 1 -6.74337095421541 LTS-039 chr11 134047319 134226374 179056 * c(VPS26B, GLB1L3, NCAPD3, ACAD8, THYN1, GLB1L2) 0.275575106991347 16 0.0976981533431757 1.08532474652327 605 0.415592984758347 5 4 1 -6.7820013824938 LTS-039 chr11 134226375 134228832 2458 * GLB1L2 NA 0 NA 0.503 1 NA NA NA NA NA LTS-039 chr11 134228833 134856661 627829 * c(B3GAT1, LOC283177, GLB1L2) 0.317334223952526 3 0.0532259335286851 0.643388631087613 115 0.218182539619846 3 2 1 -7.36931949200597 LTS-039 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.741 1 NA NA NA NA NA LTS-039 chr12 90923 90953 31 * LOC100288778 0.387 1 NA 2.936 1 NA NA NA NA NA LTS-039 chr12 90954 2695079 2604126 * c(LINC00940, LOC100288778, LINC00942, MIR3649, CACNA1C-AS4, CACNA1C-IT3, FBXL14, DCP1B, ERC1, B4GALNT3, IQSEC3, NINJ2, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, FAM138D, CACNA1C, ADIPOR2, WNT5B, CCDC77, CACNA2D4) 0.406255648638294 73 0.106782494546403 1.34898995590119 2496 0.643396340895185 7 4 3 -6.7569682827974 LTS-039 chr12 2695080 2702283 7204 * CACNA1C NA 0 NA 0.458 1 NA NA NA NA NA LTS-039 chr12 2702284 2791756 89473 * c(CACNA1C-AS1, CACNA1C) 0.381133999855851 6 0.181667828742461 0.970947325867938 223 0.396557550936943 5 3 2 -6.74858930359587 LTS-039 chr12 2791757 2794884 3128 * c(CACNA1C-AS1, CACNA1C) NA 0 NA 1.547 1 NA NA NA NA NA LTS-039 chr12 2794885 2929318 134434 * c(CACNA1C-AS1, FKBP4, LOC283440, ITFG2, CACNA1C) 0.423797822584539 2 0.0169705627484772 1.66521664507207 199 0.59409625955392 9 5 4 -6.74114205838517 LTS-039 chr12 2929319 2929324 6 * ITFG2 NA 0 NA 1.291 1 NA NA NA NA NA LTS-039 chr12 2929325 3938286 1008962 * c(LOC100507424, TSPAN9, FOXM1, ITFG2, PRMT8, PARP11, TEAD4, TULP3, RHNO1, NRIP2, CRACR2A) 0.378588403517083 34 0.110002256499299 1.09811577894824 919 0.546716289957804 5 3 2 -6.77413849150396 LTS-039 chr12 3938287 3938987 701 * PARP11 NA 0 NA 0.766 1 NA NA NA NA NA LTS-039 chr12 3938988 4854755 915768 * c(AKAP3, RAD51AP1, FGF6, GALNT8, NDUFA9, PARP11, C12orf4, TIGAR, FGF23, DYRK4, CCND2) 0.387230252783307 29 0.121564402441203 0.91855757206052 957 0.601184493351955 5 3 2 -6.78510821680691 LTS-039 chr12 4854756 4855276 521 * GALNT8 NA 0 NA 0.606 1 NA NA NA NA NA LTS-039 chr12 4855277 5155163 299887 * c(GALNT8, KCNA1, KCNA5, KCNA6) 0.40959747844263 14 0.0605703659454789 0.64114177782691 217 0.201595243008745 2 1 1 -6.95890390610467 LTS-039 chr12 5155164 5155238 75 * KCNA5 NA 0 NA 1.119 1 NA NA NA NA NA LTS-039 chr12 5155239 6161971 1006733 * c(KCNA5, NTF3, ANO2, VWF) 0.380892338326248 14 0.12153559601574 1.25494060338579 457 0.676144074374166 6 4 2 -6.76038976979831 LTS-039 chr12 6161972 6166080 4109 * VWF NA 0 NA 5.833 1 NA NA NA NA NA LTS-039 chr12 6166081 6566753 400673 * c(LTBR, TAPBPL, PLEKHG6, SCNN1A, CD27-AS1, TNFRSF1A, VWF, CD9, CD27) 0.474014968532992 10 0.016649657987812 2.25969470893443 630 0.941078857700314 12 6 6 -9.30160945001985 LTS-039 chr12 6566754 6566756 3 * TAPBPL NA 0 NA 1.381 1 NA NA NA NA NA LTS-039 chr12 6566757 6958946 392190 * c(P3H3, CHD4, ZNF384, PIANP, IFFO1, GAPDH, GPR162, GNB3, LAG3, NOP2, COPS7A, ING4, MRPL51, TAPBPL, LPAR5, PTMS, SCARNA11, VAMP1, SCARNA10, MLF2, CDCA3, ACRBP, CD4, NCAPD2) 0.401172846278393 16 0.111594186676547 1.408094163869 1684 0.775839744448964 7 4 3 -6.7504699839778 LTS-039 chr12 6958947 7168974 210028 * c(LPCAT3, LRRC23, EMG1, C12orf57, PHB2, DSTNP2, ATN1, ENO2, RPL13P5, MIR141, MIR200C, PTPN6, SCARNA12, C1S, TPI1, USP5, CDCA3, SPSB2) 0.411708903306137 2 0.045254833995939 1.90579814517292 774 0.910331793168718 12 7 5 -6.73931090795861 LTS-039 chr12 7168975 7355361 186387 * c(C1RL-AS1, C1RL, PEX5, C1R, C1S, RBP5, CLSTN3) 0.416069510285346 5 0.0326603735434854 1.21045778270268 557 0.644076801449448 7 4 3 -6.75010179070335 LTS-039 chr12 7355362 8022630 667269 * c(SLC2A14, CLEC4C, CD163L1, APOBEC1, ACSM4, DPPA3, NANOGNB, PEX5, NANOG, CD163, GDF3) 0.34511161509512 20 0.105549427184364 0.840028051434821 751 0.487162864600997 3 2 1 -6.8156293219881 LTS-039 chr12 8022631 8043512 20882 * SLC2A14 NA 0 NA 1.895 1 NA NA NA NA NA LTS-039 chr12 8043513 9072563 1029051 * c(SLC2A14, A2ML1, PHC1, NECAP1, CLEC4E, CLEC4D, LINC00937, ZNF705A, FAM66C, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, POU5F1P3, SLC2A3, FAM86FP, C3AR1, MFAP5, CLEC6A) 0.412595028206066 13 0.0506246874001112 1.15243822078818 1130 0.525103808350349 5 3 2 -6.75181440342736 LTS-039 chr12 9072564 9073499 936 * PHC1 NA 0 NA 0.835 1 NA NA NA NA NA LTS-039 chr12 9073500 9091991 18492 * PHC1 0.40155830933017 2 0.108187337521542 0.678796783346963 100 0.369463085183258 5 3 2 -6.75152264927131 LTS-039 chr12 9091992 9093778 1787 * c(PHC1, M6PR) 0.438 1 NA 0.386272970990083 47 0.301221487993241 1 1 0 -5.76452286902297 LTS-039 chr12 9093779 9590665 496887 * c(LINC00987, KLRG1, A2M-AS1, PHC1, A2M, LINC00612, A2MP1, M6PR, DDX12P, PZP, LOC642846) 0.358918854818002 23 0.0515228565112902 0.826802978756197 693 0.390864187268958 3 2 1 -6.81045789995005 LTS-039 chr12 9590666 9633154 42489 * DDX12P NA 0 NA 0.117 1 NA NA NA NA NA LTS-039 chr12 9633155 9717935 84781 * character(0) NA 0 NA 0.12273691503492 97 0.20530973112806 0 NA NA -5.88915218757726 LTS-039 chr12 9717936 9747240 29305 * character(0) NA 0 NA 1.075 1 NA NA NA NA NA LTS-039 chr12 9747241 10588540 841300 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.438022018325549 50 0.0449808303840738 0.767733755842857 1212 0.469849413305403 4 2 2 -6.79972492749229 LTS-039 chr12 10588541 10675545 87005 * c(KLRC1, KLRC2, KLRC3) 0.347897476532899 2 0.00707106781186548 0.565535697757902 127 0.521257239864576 9 6 3 -6.98076604185554 LTS-039 chr12 10675546 10746381 70836 * KLRA1P NA 0 NA 1.447 1 NA NA NA NA NA LTS-039 chr12 10746382 10954106 207725 * c(KLRA1P, MAGOHB, STYK1, YBX3) 0.37805867579102 7 0.081571470269358 1.05261698472453 217 0.478726068543223 6 4 2 -6.79749606959234 LTS-039 chr12 10954107 11214707 260601 * c(PRH1-PRR4, PRR4, TAS2R31, TAS2R46, TAS2R19, TAS2R20, TAS2R50, TAS2R9, TAS2R8, TAS2R7, TAS2R13, TAS2R10, TAS2R14, PRB4, PRH1, PRH2) 0.367491540034278 54 0.0859458839535289 0.682904124483708 437 0.429427831730245 3 2 1 -6.73550859411743 LTS-039 chr12 11214708 11214819 112 * c(PRH1-PRR4, TAS2R46, PRB4) NA 0 NA 0.561 1 NA NA NA NA NA LTS-039 chr12 11214820 11244927 30108 * c(PRH1-PRR4, TAS2R43, TAS2R46, PRB4) NA 0 NA 0.161895613048569 39 0.192436729178299 0 NA NA -5.7655325102619 LTS-039 chr12 11244928 11285578 40651 * c(PRH1-PRR4, PRB4) NA 0 NA 1.774 1 NA NA NA NA NA LTS-039 chr12 11285579 11548488 262910 * c(SMIM10L1, PRH1-PRR4, TAS2R30, TAS2R42, PRB1, PRB3, PRB4, PRB2) 0.348162416444054 15 0.112946552889071 0.647838957046892 144 0.687751948607013 3 2 1 -6.76065020095445 LTS-039 chr12 11548489 11802939 254451 * c(ETV6, LINC01252, PRB2) NA 0 NA 3.086 1 NA NA NA NA NA LTS-039 chr12 11802940 12815450 1012511 * c(BORCS5, CREBL2, ETV6, GPR19, LRP6, LOH12CR2, MANSC1, BCL2L14, DUSP16) 0.38892285617065 12 0.0438620426779099 1.29340745592178 734 0.670872728793091 8 5 3 -6.80384245625037 LTS-039 chr12 12815451 12870034 54584 * GPR19 NA 0 NA 2.615 1 NA NA NA NA NA LTS-039 chr12 12870035 12974323 104289 * c(CDKN1B, DDX47, MIR613, APOLD1) 0.434111192989219 2 0.00282842712474619 2.57423812313756 179 1.79218902260615 14 7 7 -7.50122663099537 LTS-039 chr12 12974324 12974531 208 * DDX47 NA 0 NA 2.196 1 NA NA NA NA NA LTS-039 chr12 12974532 14958770 1984239 * c(LOC100506314, HIST4H4, C12orf60, EMP1, LINC01559, GRIN2B, GUCY2C, RPL13AP20, SMCO3, HEBP1, DDX47, WBP11, GPRC5D, ATF7IP, H2AFJ, FAM234B, MIR614, PLBD1, GSG1, GPRC5A, HTR7P1) 0.368410011882232 29 0.134375631514154 1.12243421153817 1428 0.586592983354922 6 4 2 -6.78050406323132 LTS-039 chr12 14958771 14958863 93 * c(C12orf60, SMCO3) NA 0 NA 0.761 1 NA NA NA NA NA LTS-039 chr12 14958864 15836005 877142 * c(ERP27, C12orf60, EPS8, ARHGDIB, ART4, MGP, SMCO3, PDE6H, PTPRO, RERG) 0.408143049199052 18 0.0650296312551168 0.906026557776099 741 0.389164954852781 4 2 2 -6.80521364195147 LTS-039 chr12 15836006 16035285 199280 * EPS8 NA 0 NA 3.148 1 NA NA NA NA NA LTS-039 chr12 16035286 16112915 77630 * c(STRAP, DERA) NA 0 NA 1.78266828151477 97 0.727269097371399 9 NA NA -5.76441370482612 LTS-039 chr12 16112916 16115740 2825 * DERA NA 0 NA 1.012 1 NA NA NA NA NA LTS-039 chr12 16115741 19282775 3167035 * c(MIR3974, MGST1, DERA, PIK3C2G, PLEKHA5, LMO3, SKP1P2, SLC15A5, RERGL, PLCZ1, CAPZA3) 0.394195044863833 6 0.0638278935889318 0.776729051497144 614 0.349991972424715 3 2 1 -6.92831386308235 LTS-039 chr12 19282776 20522505 1239730 * c(LOC100506393, AEBP2, PDE3A, PLEKHA5) 0.40571927943103 2 0.0827314933988261 1.10281754536828 318 0.575775668838256 5 3 2 -6.73496909183067 LTS-039 chr12 20522506 21532542 1010037 * c(SLCO1B1, SLCO1B3, IAPP, SLCO1B7, PDE3A, SLCO1C1, SLCO1A2) 0.340784188129655 15 0.125747592990312 0.827991354462616 731 0.415277072511693 4 3 1 -6.8223552415791 LTS-039 chr12 21532543 26232836 4700294 * c(MIR920, MIR4302, RASSF8-AS1, ABCC9, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, GYS2, IAPP, KCNJ8, KRAS, LDHB, LRMP, GOLT1B, CASC1, ETNK1, CMAS, BCAT1, RECQL, ST8SIA1, SLCO1A2, SOX5, PYROXD1, SPX, C2CD5) 0.416331364426681 72 0.0738379339699977 1.04043535146731 2297 0.499178734577333 5 3 2 -6.75266695523735 LTS-039 chr12 26232837 26272964 40128 * BHLHE41 NA 0 NA 6.482 1 NA NA NA NA NA LTS-039 chr12 26272965 26385864 112900 * c(BHLHE41, SSPN) 0.362176495124894 8 0.156732483641941 3.25964818367696 163 1.82038287777797 17 11 6 -6.73321919756418 LTS-039 chr12 26385865 26405708 19844 * SSPN NA 0 NA 1.16 1 NA NA NA NA NA LTS-039 chr12 26405709 27234240 828532 * c(FGFR1OP2, ITPR2, TM7SF3, ASUN, C12orf71, SSPN, MED21) 0.38549667218468 16 0.0535572901978184 1.36005996880931 721 0.551990364361389 8 5 3 -6.78044972534966 LTS-039 chr12 27234241 27234318 78 * C12orf71 NA 0 NA 0.927 1 NA NA NA NA NA LTS-039 chr12 27234319 27277995 43677 * C12orf71 0.341380340902871 2 0.00212132034355968 0.587236278012537 39 0.347547538472042 18 12 6 -7.35765543398618 LTS-039 chr12 27277996 27288053 10058 * character(0) NA 0 NA 1.107 1 NA NA NA NA NA LTS-039 chr12 27288054 27888573 600520 * c(STK38L, SMCO2, REP15, ARNTL2, MRPS35, PPFIBP1) 0.331611884947911 21 0.123262379847682 1.43387102727247 661 1.82594937407315 9 6 3 -6.74943986112023 LTS-039 chr12 27888574 31255471 3366898 * c(MANSC4, LINC00941, DDX11-AS1, OVCH1-AS1, IPO8, DDX11, OVCH1, TSPAN11, ERGIC2, CCDC91, FAR2, PTHLH, KLHL42, MRPS35, CAPRIN2, TMTC1) 0.384960720238685 60 0.0959649462249357 1.07105041779978 1673 0.546364144546885 5 3 2 -6.76471347061377 LTS-039 chr12 31255472 31255805 334 * DDX11 NA 0 NA 1.815 1 NA NA NA NA NA LTS-039 chr12 31255806 31535335 279530 * c(DENND5B, DDX11, FAM60A, FLJ13224) 0.347540328015884 11 0.059691022623324 1.65253810866026 229 0.908428619270053 9 6 3 -6.73450064548864 LTS-039 chr12 31535336 33560059 2024724 * c(DNM1L, RNU6-78P, DENND5B-AS1, FGD4, DENND5B, AMN1, ETFBKMT, SYT10, H3F3C, YARS2, PKP2, KIAA1551, BICD1) 0.452851585538472 44 0.0331999516034187 0.93107063207412 1363 0.449268718252248 4 2 2 -7.00022917309523 LTS-039 chr12 33560060 34182670 622611 * c(SYT10, ALG10) NA 0 NA 0.78241588444866 101 0.333945223171717 3 NA NA -5.79471706944425 LTS-039 chr12 38710341 39745624 1035284 * c(ALG10B, CPNE8, KIF21A) 0.361 1 NA 0.645209762069213 351 0.283893932625699 3 3 0 -5.83672653760263 LTS-039 chr12 39745625 42476193 2730569 * c(SLC2A13, LRRK2, CNTN1, ABCD2, C12orf40, GXYLT1, PDZRN4, KIF21A) 0.42112288675989 46 0.0996531012046798 0.691333489658051 1790 0.305968986962695 3 2 1 -6.89442942277361 LTS-039 chr12 42476194 42476331 138 * GXYLT1 NA 0 NA 2.152 1 NA NA NA NA NA LTS-039 chr12 42476332 42835327 358996 * c(YAF2, GXYLT1, PPHLN1, ZCRB1) 0.394996386241642 14 0.0763117161514405 1.04961289578426 378 0.603530823958927 5 3 2 -6.74827604332855 LTS-039 chr12 42835328 42835354 27 * PPHLN1 NA 0 NA 0.832 1 NA NA NA NA NA LTS-039 chr12 42835355 44191724 1356370 * c(PRICKLE1, IRAK4, PPHLN1, TWF1, ADAMTS20, PUS7L) 0.455215402034596 8 0.0359990079228383 0.735690663217308 649 0.286679748352459 4 2 2 -7.34488215386693 LTS-039 chr12 44191725 44192298 574 * TWF1 NA 0 NA 1.434 1 NA NA NA NA NA LTS-039 chr12 44192299 44200169 7871 * TWF1 NA 0 NA 1.60485175247234 39 0.776360589663197 8 NA NA -5.76441036555531 LTS-039 chr12 44200170 44238370 38201 * c(TWF1, TMEM117) NA 0 NA 0.399 1 NA NA NA NA NA LTS-039 chr12 44238371 45568123 1329753 * c(DBX2, NELL2, PLEKHA8P1, RACGAP1P, TMEM117) 0.45733706745138 4 0.0127148207485071 0.602474645383802 338 0.190803839448017 2 1 1 -8.9564502584313 LTS-039 chr12 45568124 45825914 257791 * c(ANO6, PLEKHA8P1, RNY5) 0.374474749096396 9 0.151930905348451 0.92930203712553 201 0.490344770320939 5 3 2 -6.77364786524451 LTS-039 chr12 45825915 46149689 323775 * c(ANO6, ARID2, LINC00938) NA 0 NA 2.61431622386261 39 1.02061730017392 14 NA NA -5.76458832933993 LTS-039 chr12 46149690 46169712 20023 * ARID2 NA 0 NA 0.864 1 NA NA NA NA NA LTS-039 chr12 46169713 46598331 428619 * c(ARID2, SLC38A1, SCAF11) 0.444 1 NA 0.938764966158941 525 0.502440567317103 4 4 0 -5.76710171611309 LTS-039 chr12 46598332 46765177 166846 * c(SLC38A2, SLC38A1) 0.48 1 NA 1.55172270978772 170 0.454547225828274 8 8 0 -5.76515056868475 LTS-039 chr12 46765178 47158504 393327 * SLC38A2 NA 0 NA 0.589 1 NA NA NA NA NA LTS-039 chr12 47158505 48064159 905655 * c(PCED1B-AS1, MIR4698, AMIGO2, SLC38A4, RPAP3, PCED1B) 0.432697576853656 4 0.0282533183891733 0.768881733708298 267 0.286050039753331 4 2 2 -6.8784930049147 LTS-039 chr12 48064160 48073244 9085 * RPAP3 NA 0 NA 1.242 1 NA NA NA NA NA LTS-039 chr12 48073245 48175276 102032 * c(RAPGEF3, SLC48A1, RPAP3, ENDOU) 0.453593476645609 6 0.0370445677529108 1.22147099463359 418 0.456782455271918 6 3 3 -6.9541385398294 LTS-039 chr12 48175277 48866576 691300 * c(ZNF641, OR10AD1, COL2A1, ASB8, ANP32D, SENP1, H1FNT, CCDC184, HDAC7, PFKM, SLC48A1, VDR, TMEM106C) 0.43080796876732 45 0.120809504442475 1.00864635340699 1340 0.524023749623778 4 2 2 -6.75587417668721 LTS-039 chr12 48866577 48963896 97320 * c(C12orf54, ANP32D, OR8S1, LALBA) 0.473178618611912 12 0.0380250117048176 0.661230406908439 145 0.227890354340706 2 1 1 -7.45544004850964 LTS-039 chr12 48963897 49047141 83245 * KANSL2 NA 0 NA 1.498 1 NA NA NA NA NA LTS-039 chr12 49047142 49110706 63565 * c(KANSL2, SNORA2A, SNORA2B, SNORA2C, CCNT1) 0.466051151384746 8 0.0232159889485058 1.30161242947579 277 0.531895144359004 6 3 3 -7.87647422195354 LTS-039 chr12 49110707 49121149 10443 * CCNT1 NA 0 NA 0.552 1 NA NA NA NA NA LTS-039 chr12 49121150 49225973 104824 * c(MIR4701, ADCY6, LINC00935, CACNB3, DDX23) 0.473679143458529 3 0.0315013227235513 0.76634519455332 363 0.35629146618507 4 2 2 -7.69404033505307 LTS-039 chr12 49225974 49411005 185032 * c(DDN, RND1, ARF3, FKBP11, PRKAG1, WNT1, WNT10B, CCDC65, DDX23) 0.463084366651609 6 0.0500576334505205 1.02297581086111 591 0.383041277681417 4 2 2 -6.98850249790641 LTS-039 chr12 49411006 49411086 81 * PRKAG1 NA 0 NA 2.286 1 NA NA NA NA NA LTS-039 chr12 49411087 49415013 3927 * c(PRKAG1, KMT2D) 0.464 1 NA 2.13278239294644 65 0.946828008354129 11 11 0 -5.76441041658271 LTS-039 chr12 49415014 49499686 84673 * c(RHEBL1, DHH, LMBR1L, KMT2D) NA 0 NA 0.901269332233095 652 0.367577646000085 4 NA NA -5.76445279966551 LTS-039 chr12 49499687 49664047 164361 * c(TUBA1B, LMBR1L, TUBA1A, TUBA1C) NA 0 NA 1.7125339979506 137 0.773919769260935 9 NA NA -5.76476619009145 LTS-039 chr12 49664048 49665984 1937 * TUBA1C NA 0 NA 0.936 1 NA NA NA NA NA LTS-039 chr12 49665985 49856773 190789 * c(TROAP, LOC100335030, C1QL4, PRPH, SPATS2, DNAJC22, TUBA1C) 0.466141896194383 2 0.0438406204335659 0.977358777680281 299 0.410825362378104 4 2 2 -7.10737121133493 LTS-039 chr12 49856774 49856785 12 * SPATS2 NA 0 NA 1.707 1 NA NA NA NA NA LTS-039 chr12 49856786 50185770 328985 * c(MCRS1, KCNH3, PRPF40B, NCKAP5L, SPATS2, TMBIM6, FAM186B, FMNL3) 0.349304255319125 7 0.0777321408060122 1.2731221779114 912 0.629934069551279 6 4 2 -6.73624840837137 LTS-039 chr12 50185771 50185861 91 * NCKAP5L NA 0 NA 0.749 1 NA NA NA NA NA LTS-039 chr12 50185862 50197002 11141 * NCKAP5L 0.415666002656085 2 0.0586898628384834 0.876372485756321 109 0.278260412111913 5 3 2 -6.7493856555933 LTS-039 chr12 50197003 50197711 709 * NCKAP5L NA 0 NA 1.498 1 NA NA NA NA NA LTS-039 chr12 50197712 50366669 168958 * c(BCDIN3D-AS1, BCDIN3D, FAIM2, LOC283332, AQP2, AQP5, AQP6, NCKAP5L) 0.376389641778805 6 0.0304236749916903 2.09958339049587 364 0.729550124211815 11 7 4 -6.74404131011847 LTS-039 chr12 50366670 51663131 1296462 * c(MIR1293, LARP4, FAM186A, METTL7A, LETMD1, GPD1, TMPRSS12, RACGAP1, AQP6, ASIC1, ATF1, SLC11A2, LIMA1, POU6F1, SMAGP, DIP2B, HIGD1C, SMARCD1, TFCP2, CSRNP2, COX14, CERS5, DAZAP2) 0.430749393495413 34 0.0843291921932819 1.23493875074802 2283 0.584249168717721 6 3 3 -6.73349223854854 LTS-039 chr12 51663132 51675260 12129 * c(BIN2, SMAGP) NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr12 51675261 52315429 640169 * c(GALNT6, CELA1, ANKRD33, FIGNL2, BIN2, SCN8A, ACVRL1, SLC4A8) 0.442838094130427 20 0.105660765511239 0.910061665480785 795 0.351938168474647 4 2 2 -6.74222969825161 LTS-039 chr12 52315430 52565378 249949 * c(KRT80, GRASP, NR4A1, ATG101, ACVR1B, ACVRL1) 0.472054122586692 3 0.00721110255092796 1.27577114295757 401 0.580922756399457 6 3 3 -12.8094227991095 LTS-039 chr12 52565379 52681533 116155 * c(KRT80, C12orf80, LINC00592, KRT7, KRT81, KRT86) 0.450996229115036 10 0.0485785732373624 2.04604781066057 206 0.687124482664364 10 5 5 -6.83621837265896 LTS-039 chr12 52681534 52681559 26 * c(KRT81, KRT86) NA 0 NA 1.134 1 NA NA NA NA NA LTS-039 chr12 52681560 52909583 228024 * c(KRT6C, KRT5, KRT6A, KRT6B, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT75) 0.435780986720435 47 0.0493460284854774 1.17350536750844 585 0.596597286572072 6 3 3 -6.74103468570584 LTS-039 chr12 52909584 52938069 28486 * c(KRT71, KRT5) 0.271780610704525 2 0.349310749906154 1.97914037652308 71 0.994742328141503 12 9 3 -6.73356569924813 LTS-039 chr12 52938070 53242582 304513 * c(KRT71, KRT74, KRT72, KRT78, KRT73, KRT79, KRT77, KRT1, KRT2, KRT3, KRT4, KRT76) 0.407131207300868 27 0.169484899192026 1.0331226610453 868 0.445182545881504 5 3 2 -6.73429942179727 LTS-039 chr12 53242583 53450876 208294 * c(KRT78, EIF4B, TNS2, LOC283335, KRT8, KRT18) 0.475081516131146 5 0.018514858897653 1.8357920864751 254 3.69112193995603 10 5 5 -9.02874432534968 LTS-039 chr12 53450877 53729482 278606 * c(SP7, TNS2, ZNF740, IGFBP6, ITGB7, CSAD, PFDN5, RARG, C12orf10, AAAS, SOAT2, SPRYD3, MFSD5, ESPL1) 0.43525352728694 13 0.04456484759343 1.20805859689152 1186 0.601733010335218 6 3 3 -6.73990864545394 LTS-039 chr12 53729483 53773972 44490 * SP7 NA 0 NA 2.961 1 NA NA NA NA NA LTS-039 chr12 53773973 53810288 36316 * SP1 NA 0 NA 2.11177488705721 171 0.690497067784647 11 NA NA -5.76442888734199 LTS-039 chr12 53810289 53817608 7320 * character(0) NA 0 NA 1.079 1 NA NA NA NA NA LTS-039 chr12 53817609 53825350 7742 * AMHR2 NA 0 NA 0.935290663494382 69 0.546014855963326 4 NA NA -5.76444558927792 LTS-039 chr12 53825351 53835512 10162 * c(PCBP2, PRR13) NA 0 NA 2.013 1 NA NA NA NA NA LTS-039 chr12 53835513 54367636 532124 * c(HOTAIR, LOC100652999, HOXC13-AS, ATF7, HOXC11, HOXC12, HOXC13, PCBP2, ATP5G2, PRR13, CALCOCO1, TARBP2, MAP3K12, NPFF) 0.427154456449973 5 0.0504212256891877 1.72640829404251 715 1.05326229918943 9 5 4 -6.73401683517695 LTS-039 chr12 54367637 54371363 3727 * c(HOTAIR, HOXC11) 0.469403808358091 3 0.0379780638439262 4.36974946000794 53 1.66671404100546 20 10 10 -7.29938445674481 LTS-039 chr12 54371364 54406588 35225 * c(HOXC8, HOXC9, HOXC10, MIR196A2) 0.443375774296726 2 0.00848528137423858 2.31425026077929 138 1.01692382185296 12 6 6 -7.84088075454431 LTS-039 chr12 54406589 54651527 244939 * c(LOC100240734, LOC100240735, MIR3198-2, CBX5, SMUG1, HOXC4, HOXC5, HOXC6, LOC400043, FLJ12825, MIR615) 0.410937571638121 6 0.0366810577819124 1.39762141730268 459 0.60939825851829 5 3 2 -6.76737427308296 LTS-039 chr12 54651528 54673976 22449 * CBX5 NA 0 NA 6.891 1 NA NA NA NA NA LTS-039 chr12 54673977 54677582 3606 * HNRNPA1 NA 0 NA 4.30931559673526 45 1.22222600573335 20 NA NA -5.76443508479428 LTS-039 chr12 54677583 54677716 134 * HNRNPA1 NA 0 NA 2.497 1 NA NA NA NA NA LTS-039 chr12 54677717 54801478 123762 * c(COPZ1, ZNF385A, HNRNPA1, ITGA5, MIR148B, NFE2, GPR84) 0.395453711781645 6 0.0532566114831452 1.70117205957379 404 0.771908980330388 10 6 4 -6.74399200324031 LTS-039 chr12 54801479 55041081 239603 * c(DCD, GTSF1, NCKAP1L, ITGA5, PDE1B, PPP1R1A, GLYCAM1, LACRT) 0.172414060485825 4 0.224948142172072 0.964137259278795 499 0.586321416410507 6 5 1 -6.78000898547231 LTS-039 chr12 55041082 55042015 934 * DCD NA 0 NA 0.451 1 NA NA NA NA NA LTS-039 chr12 55042016 55805087 763072 * c(DCD, MUCL1, OR10A7, OR6C74, OR6C3, OR6C6, OR6C1, OR6C75, OR6C65, OR9K2, NEUROD4, TESPA1) 0.438598715212213 5 0.0395916657896583 0.592479789287791 407 0.285351113347101 2 1 1 -6.82407506523612 LTS-039 chr12 55805088 55808077 2990 * character(0) 0.460882580496129 6 0.0316464847968933 0.337522836762888 77 0.242249400502345 2 1 1 -7.24088326609047 LTS-039 chr12 55808078 55808174 97 * character(0) NA 0 NA 0.571 1 NA NA NA NA NA LTS-039 chr12 55808175 56031656 223482 * c(OR2AP1, OR10P1, OR6C2, OR6C4, OR6C76, OR6C70, OR6C68) 0.446929719683307 5 0.0545957873832771 0.524861290261664 179 0.16473627727989 2 1 1 -6.78624525510222 LTS-039 chr12 56031657 56094975 63319 * c(METTL7B, ITGA7) 0.491 1 NA 0.834506981934419 168 0.322498111026004 4 4 0 -5.7660158783069 LTS-039 chr12 56094976 56095132 157 * ITGA7 NA 0 NA 1.166 1 NA NA NA NA NA LTS-039 chr12 56095133 56214299 119167 * c(BLOC1S1-RDH5, GDF11, BLOC1S1, ORMDL2, ITGA7, RDH5, SARNP, DNAJC14, CD63) 0.468720633197789 4 0.0407707002637924 1.25458891884357 351 0.532058025117545 6 3 3 -7.21422454634246 LTS-039 chr12 56214300 56214399 100 * c(ORMDL2, DNAJC14) NA 0 NA 2.169 1 NA NA NA NA NA LTS-039 chr12 56214400 56226243 11844 * c(ORMDL2, DNAJC14) NA 0 NA 2.16116850660278 90 0.747094344477698 11 NA NA -5.76441023902289 LTS-039 chr12 56226244 56308160 81917 * c(MMP19, PYM1) NA 0 NA 1.00305587975275 125 0.439326214604489 5 NA NA -5.76554110875958 LTS-039 chr12 56308161 56320870 12710 * PYM1 NA 0 NA 1.799 1 NA NA NA NA NA LTS-039 chr12 56320871 56558211 237341 * c(CDK2, MYL6B, DGKA, ERBB3, ESYT1, MYL6, PA2G4, RAB5B, RPL41, RPS26, IKZF4, PMEL, SMARCC2, SUOX, PYM1, ZC3H10) 0.339894138444074 12 0.0416095669360552 1.90217284120484 1272 1.04777413767103 12 8 4 -6.74667725128389 LTS-039 chr12 56558212 56625075 66864 * c(RNF41, SLC39A5, SMARCC2, NABP2) NA 0 NA 1.18374701268284 262 0.374696164999899 6 NA NA -5.7653247367014 LTS-039 chr12 56625076 56646704 21629 * c(ANKRD52, SLC39A5) NA 0 NA 0.77444936058227 234 0.214593278875168 3 NA NA -5.76645139009553 LTS-039 chr12 56646705 57011397 364693 * c(CNPY2, BAZ2A, CS, GLS2, ANKRD52, SPRYD4, APOF, MIP, IL23A, RBMS2, STAT2, TIMELESS, COQ10A, PAN2) 0.4725899751964 8 0.0163352161208319 1.20778773376045 1233 0.643535205177806 6 3 3 -9.25269012917065 LTS-039 chr12 57011398 57029922 18525 * BAZ2A NA 0 NA 1.929 1 NA NA NA NA NA LTS-039 chr12 57029923 57146148 116226 * c(PTGES3, BAZ2A, SNORD59A, NACA, ATP5B, PRIM1, SNORD59B) 0.47533919184416 12 0.0206241620582767 1.56804831999102 353 0.684513935989334 8 4 4 -8.71682200636898 LTS-039 chr12 57146149 57167542 21394 * HSD17B6 NA 0 NA 0.666 1 NA NA NA NA NA LTS-039 chr12 57167543 57442214 274672 * c(GPR182, SDR9C7, MYO1A, TAC3, RDH16, HSD17B6, ZBTB39) 0.48 1 NA 0.852013815984015 452 0.294702954693721 4 4 0 -5.76834446564292 LTS-039 chr12 57442215 57449433 7219 * c(NEMP1, MYO1A) NA 0 NA 1.151 1 NA NA NA NA NA LTS-039 chr12 57449434 57578222 128789 * c(NEMP1, LRP1, NAB2, STAT6) 0.496 2 5.55111512312578e-17 1.08991754672975 561 0.365225721652456 6 3 3 -210.123512678731 LTS-039 chr12 57578223 57578652 430 * LRP1 NA 0 NA 0.516 1 NA NA NA NA NA LTS-039 chr12 57578653 57606837 28185 * c(MIR1228, LRP1) NA 0 NA 0.736740568460575 266 0.236925849446416 3 NA NA -5.76478354574507 LTS-039 chr12 57606838 57642023 35186 * c(NXPH4, STAC3, LRP1, NDUFA4L2, SHMT2) NA 0 NA 1.30245294912385 227 0.553039130189959 6 NA NA -5.76451503645502 LTS-039 chr12 57642024 57642497 474 * STAC3 NA 0 NA 0.951 1 NA NA NA NA NA LTS-039 chr12 57642498 57868032 225535 * c(R3HDM2, STAC3, GLI1, INHBC, ARHGAP9, INHBE) NA 0 NA 0.847755863012623 417 0.308038661098295 4 NA NA -5.76805338872663 LTS-039 chr12 57868033 57868090 58 * ARHGAP9 NA 0 NA 1.357 1 NA NA NA NA NA LTS-039 chr12 57868091 58135950 267860 * c(AGAP2-AS1, DCTN2, OS9, MBD6, ARHGEF25, AGAP2, DDIT3, DTX3, B4GALNT1, KIF5A, MARS, ARHGAP9, SLC26A10, PIP4K2C) 0.403085713990649 15 0.117710904944517 1.07087402530109 1296 0.428913250486056 5 3 2 -6.73371794811881 LTS-039 chr12 58135951 58138572 2622 * character(0) NA 0 NA 2.882 1 NA NA NA NA NA LTS-039 chr12 58138573 58340815 202243 * c(LOC100506844, TSFM, CTDSP2, CDK4, AVIL, CYP27B1, METTL21B, MIR26A2, METTL1, TSPAN31, ATP23, MARCH9) 0.364562131260988 29 0.0766842255183539 1.54862031018045 723 0.622310940643006 6 4 2 -6.75663779705451 LTS-039 chr12 58340816 59314301 973486 * c(LRIG3, ATP23) 0.454 1 NA 0.990885307425429 202 0.426113999690205 5 5 0 -5.78434730579113 LTS-039 chr12 59314302 59445676 131375 * LRIG3 NA 0 NA 0.228 1 NA NA NA NA NA LTS-039 chr12 59445677 62652542 3206866 * c(FAM19A2, SLC16A7) 0.451593168008756 6 0.0231581519124476 0.628727212961819 216 0.258347925402667 2 1 1 -7.91587132139856 LTS-039 chr12 62652543 62988661 336119 * c(MON2, FAM19A2, USP15) 0.468277318939795 7 0.020538001942972 0.986609447909195 459 0.671183030262008 4 2 2 -8.27555975117627 LTS-039 chr12 62988662 63038421 49760 * c(MON2, LINC01465, MIRLET7I, PPM1H) 0.421542261620029 3 0.0716961179795206 1.90732290276243 65 0.646685464429073 9 5 4 -6.73522924637395 LTS-039 chr12 63038422 63359355 320934 * PPM1H 0.438414900845957 6 0.053838338260636 1.01754206601874 147 0.375636823670138 4 2 2 -6.76902402329702 LTS-039 chr12 63359356 63359490 135 * character(0) NA 0 NA 0.759 1 NA NA NA NA NA LTS-039 chr12 63359491 63974634 615144 * c(DPY19L2, AVPR1A) 0.475575748563994 4 0.0114455231422596 0.592016827720358 101 0.294384102831658 2 1 1 -10.9981933040161 LTS-039 chr12 63974635 63976198 1564 * DPY19L2 NA 0 NA 0.814 1 NA NA NA NA NA LTS-039 chr12 63976199 66309319 2333121 * c(MIR548Z, TMEM5, WIF1, XPOT, C12orf56, C12orf66, RPSAP52, TBC1D30, LEMD3, MSRB3, GNS, RASSF3, DPY19L2, TBK1, FLJ41278, SRGAP1, MIR548C, HMGA2) 0.426848736167419 30 0.0916955231487189 1.05385974253244 1809 0.57052838197338 5 3 2 -6.76209809659478 LTS-039 chr12 66309320 66345145 35826 * HMGA2 NA 0 NA 2.772 1 NA NA NA NA NA LTS-039 chr12 66345146 66360090 14945 * HMGA2 0.305194868212235 6 0.234505792394701 1.82979892059832 217 0.879006340678726 7 5 2 -6.73408599330797 LTS-039 chr12 66360091 66500880 140790 * character(0) NA 0 NA 0.879 1 NA NA NA NA NA LTS-039 chr12 66500881 69992146 3491266 * c(LOC100130075, MIR1279, SNORA70G, MIR3913-2, MIR3913-1, LOC100507250, CCT2, FRS2, CPSF6, IRAK3, CPM, GRIP1, IFNG, LYZ, MDM2, IL22, TMBIM4, SLC35E3, IL26, CAND1, MDM1, NUP107, RAP1B, YEATS4, LLPH, DYRK2, HELB) 0.449391952297165 53 0.0708267013600398 0.974074845569907 2312 0.509891880093149 4 2 2 -6.83677641818025 LTS-039 chr12 69992147 71551644 1559498 * c(CCT2, RAB3IP, BEST3, KCNMB4, LRRC10, CNOT2, PTPRB, PTPRR, TSPAN8) 0.391864149768202 15 0.163685179827735 0.787500044064284 1338 0.385078781254395 3 2 1 -6.8073749816399 LTS-039 chr12 71551645 71833530 281886 * TSPAN8 NA 0 NA 3.52 1 NA NA NA NA NA LTS-039 chr12 71833531 72163705 330175 * c(ZFC3H1, RAB21, TMEM19, TSPAN8, THAP2, LGR5) 0.395448335809521 7 0.176697212094319 1.42420178648872 598 0.772393243874028 8 5 3 -6.74041093222017 LTS-039 chr12 72163706 72164293 588 * RAB21 NA 0 NA 1.105 1 NA NA NA NA NA LTS-039 chr12 72164294 74935251 2770958 * c(LOC100507377, TPH2, RAB21, TRHDE-AS1, TRHDE, ATXN7L3B, TBC1D15, MRS2P2) 0.443886370467989 14 0.040408423123659 0.905429999759821 631 0.386741386917266 4 2 2 -6.79889005284397 LTS-039 chr12 74935252 75433831 498580 * character(0) NA 0 NA 0.61 1 NA NA NA NA NA LTS-039 chr12 75433832 75881519 447688 * c(GLIPR1, GLIPR1L2, GLIPR1L1, KCNC2, CAPS2) 0.400370167765832 9 0.152 0.62429273805065 394 0.342566087297867 3 2 1 -6.79382437964078 LTS-039 chr12 75881520 75884173 2654 * GLIPR1 NA 0 NA 1.376 1 NA NA NA NA NA LTS-039 chr12 75884174 77247471 1363298 * c(GLIPR1, KRR1, OSBPL8, PHLDA1, ZDHHC17, NAP1L1, BBS10) 0.440456455709369 14 0.0501960989684293 0.971190280252385 979 0.422652451835946 4 2 2 -6.78882468063661 LTS-039 chr12 77247472 77252442 4971 * ZDHHC17 NA 0 NA 0.405 1 NA NA NA NA NA LTS-039 chr12 77252443 88423100 11170658 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, E2F7, CSRP2, TMTC2, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, RASSF9) 0.433064630956394 55 0.0814547528857388 0.767580833387458 3137 0.395452876528364 3 2 1 -7.30042971420123 LTS-039 chr12 88423101 88974677 551577 * c(TMTC3, C12orf50, KITLG, CEP290, C12orf29) 0.22229431189035 6 0.254892657145448 1.06578045694044 603 0.62279655888978 5 4 1 -6.73895721515495 LTS-039 chr12 89741056 89747093 6038 * DUSP6 NA 0 NA 2.70447802834496 103 0.840406420404027 14 NA NA -5.76441018064976 LTS-039 chr12 89747094 89813506 66413 * POC1B NA 0 NA 0.945 1 NA NA NA NA NA LTS-039 chr12 89813507 89983860 170354 * c(POC1B-GALNT4, POC1B, ATP2B1, GALNT4) 0.410010388135339 4 0.107441069118533 1.07500986170497 262 0.875328791174429 5 3 2 -6.73348037366073 LTS-039 chr12 89983861 92387387 2403527 * c(KERA, DCN, EPYC, CCER1, LINC01619, LINC00936, LUM, LINC00615, ATP2B1) 0.39439154847562 13 0.129477797324483 0.661026877923692 543 0.268963989509472 3 2 1 -6.85738095228019 LTS-039 chr12 92387388 92536289 148902 * c(LINC01619, BTG1) NA 0 NA 2.457 1 NA NA NA NA NA LTS-039 chr12 92536290 92539520 3231 * c(LINC01619, BTG1) NA 0 NA 2.40295449138679 49 1.01171063712175 12 NA NA -5.76441167166021 LTS-039 chr12 92539521 92539590 70 * BTG1 0.396 1 NA 0.461 1 NA NA NA NA NA LTS-039 chr12 92539591 93164657 625067 * c(C12orf74, PLEKHG7, CLLU1OS, CLLU1, BTG1) 0.456885314109081 7 0.0382466929787338 0.819195423412743 170 0.511801851831122 4 2 2 -7.01224870215327 LTS-039 chr12 93164658 93793177 628520 * c(NUDT4, PLEKHG7, LOC643339, EEA1) 0.461898152369002 7 0.0287907061723877 1.15555679054728 345 0.637609125152647 6 3 3 -7.37209645171191 LTS-039 chr12 93793178 93795589 2412 * NUDT4 0.346 1 NA 0.594451957360551 69 0.40873015879795 2 2 0 -5.76452125339402 LTS-039 chr12 93795590 95451518 1655929 * c(MIR5700, PLXNC1, NUDT4, SOCS2-AS1, CEP83-AS1, KRT19P2, MRPL42, CEP83, NDUFA12, TMCC3, NR2C1, UBE2N, CRADD, SOCS2) 0.408017561681813 10 0.145503913654887 0.940335251315912 1028 0.451420932802673 4 2 2 -6.76127633250461 LTS-039 chr12 95451519 96707252 1255734 * c(PGAM1P5, MIR3685, METAP2, CCDC38, AMDHD1, ELK3, HAL, LTA4H, MIR331, CDK17, VEZT, FGD6, NTN4, SNRPF, NR2C1, USP44) 0.427369052081719 38 0.127689504386943 1.16231814021823 1491 0.540906408450851 6 3 3 -6.74782874252589 LTS-039 chr12 96707253 96717686 10434 * CDK17 NA 0 NA 0.542 1 NA NA NA NA NA LTS-039 chr12 96717687 98389241 1671555 * c(MIR1251, MIR4303, NEDD1, RMST, MIR135A2, CDK17, LOC643711) 0.449835809558818 11 0.0502629449631002 0.825753917553001 496 0.383892947039374 4 2 2 -6.85873660674033 LTS-039 chr12 98389242 98848975 459734 * SLC9A7P1 NA 0 NA 1.352 1 NA NA NA NA NA LTS-039 chr12 98848976 98925620 76645 * c(TMPO-AS1, SLC9A7P1, LOC643770, TMPO) 0.408 1 NA 1.69630585277981 107 0.796277546273944 8 8 0 -5.7645913927435 LTS-039 chr12 98925621 98925650 30 * TMPO 0.406 1 NA 0.793 1 NA NA NA NA NA LTS-039 chr12 98925651 98928646 2996 * TMPO 0.365 1 NA 0.949148553018171 45 0.219930204722987 4 4 0 -5.76455485309964 LTS-039 chr12 98928647 99189557 260911 * c(IKBIP, APAF1, SLC25A3, ANKS1B, SNORA53, TMPO) 0.313 1 NA 0.893511737748968 501 0.403525116651322 4 4 0 -5.76441400940558 LTS-039 chr12 99189558 101673969 2484412 * c(MIR1827, DEPDC4, ANO4, SLC5A8, FAM71C, UHRF1BP1L, SLC17A8, UTP20, GAS2L3, GOLGA2P5, SCYL2, ANKS1B, ACTR6, NR1H4) 0.355382349262221 20 0.130006518055219 0.647498283879052 1228 0.311356049022061 3 2 1 -6.87445918205543 LTS-039 chr12 101673970 102874489 1200520 * c(SPIC, UTP20, IGF1, ARL1, MYBPC1, SYCP3, CCDC53, PMCH, PARPBP, DRAM1, CHPT1, NUP37, GNPTAB) 0.351895999361883 39 0.0719263568500213 0.839172469077689 1484 0.420812912470593 3 2 1 -6.88489165424054 LTS-039 chr12 102874490 103230676 356187 * LINC00485 NA 0 NA 0.572 1 NA NA NA NA NA LTS-039 chr12 103230677 104166038 935362 * c(C12orf42, ASCL1, PAH, STAB2) 0.343992314254193 10 0.136124493673173 0.598172260278165 624 0.285378939462381 3 2 1 -6.95658093313103 LTS-039 chr12 104166039 104166137 99 * NT5DC3 NA 0 NA 0.702 1 NA NA NA NA NA LTS-039 chr12 104166138 106480757 2314620 * c(MIR3652, MIR3922, C12orf45, ALDH1L2, KIAA1033, TTC41P, HCFC2, C12orf75, NFYB, EID3, CHST11, NT5DC3, APPL2, TDG, HSP90B1, C12orf73, TXNRD1, GLT8D2, SLC41A2, NUAK1) 0.356056861921971 28 0.0821294951174909 0.887955133624122 2039 0.852121790369137 3 2 1 -6.84590096311774 LTS-039 chr12 106480758 106500081 19324 * NUAK1 NA 0 NA 1.918 1 NA NA NA NA NA LTS-039 chr12 106500082 106757727 257646 * c(CKAP4, TCP11L2, POLR3B, NUAK1) 0.308699940347603 6 0.0299115362360411 1.47039580882018 267 0.8558642806003 7 5 2 -6.73661287280809 LTS-039 chr12 106757728 106760347 2620 * POLR3B NA 0 NA 0.706 1 NA NA NA NA NA LTS-039 chr12 106760348 110182140 3421793 * c(USP30-AS1, LOC100287944, LOC100505978, PRDM4, PWP1, FICD, ASCL4, BTBD11, ALKBH2, FOXN4, CMKLR1, CRY1, DAO, ISCU, CORO1C, MYO1H, ACACB, MMAB, TMEM119, MVK, SSH1, RIC8B, SVOP, POLR3B, RFX4, SELPLG, LOC728739, UNG, MTERF2, KCTD10, USP30, FAM222A, FAM222A-AS1, UBE3B, TMEM263, WSCD2, SART3) 0.351584109761424 77 0.0559839561774826 0.838146149023223 3844 0.599618584969565 3 2 1 -6.95538055275042 LTS-039 chr12 110182141 110238537 56397 * c(TRPV4, FAM222A, FAM222A-AS1) NA 0 NA 0.576825532396076 127 0.160042159487425 2 NA NA -5.77353709219784 LTS-039 chr12 110238538 110240795 2258 * TRPV4 NA 0 NA 1.41 1 NA NA NA NA NA LTS-039 chr12 110240796 111052331 811536 * c(MIR4497, ARPC3, RAD9B, PPTC7, IFT81, FAM216A, C12orf76, ATP2A2, GPN3, GLTP, ANAPC7, VPS29, TRPV4, TCTN1, TCHP, ANKRD13A, GIT2) 0.3302327657436 22 0.0988333351583773 0.898135770259363 1545 0.401960175681178 4 3 1 -6.79804747816418 LTS-039 chr12 111052332 111057620 5289 * TCTN1 NA 0 NA 0.57 1 NA NA NA NA NA LTS-039 chr12 111057621 113336687 2279067 * c(LINC01405, SH2B3, TRAFD1, ERP29, FAM109A, CCDC63, ALDH2, RPH3A, CUX2, HECTD4, MYL2, MAPKAPK5-AS1, PPP1CC, PTPN11, RPL6, ATXN2, TCTN1, NAA25, ACAD10, BRAP, HVCN1, MAPKAPK5, ADAM1A, TMEM116) 0.348899424661031 15 0.105265786057416 0.7227665140151 2744 0.366288569627519 3 2 1 -6.76230330134697 LTS-039 chr12 113336688 113344548 7861 * character(0) NA 0 NA 1.923 1 NA NA NA NA NA LTS-039 chr12 113344549 113376585 32037 * c(OAS1, OAS3) 0.29399457666946 4 0.0131021626713557 1.5402624972637 113 0.644824677021654 11 8 3 -6.77796245138825 LTS-039 chr12 113376586 113379330 2745 * OAS3 NA 0 NA 0.84 1 NA NA NA NA NA LTS-039 chr12 113379331 113796712 417382 * c(IQCD, DTX1, PLBD2, CFAP73, OAS2, OAS3, TPCN1, DDX54, SLC8B1, RASAL1, RITA1) 0.33225238420996 40 0.067847321055138 0.824355355944393 1165 0.381993185496499 4 3 1 -6.89650610254619 LTS-039 chr12 113796713 113806805 10093 * PLBD2 NA 0 NA 0.549 1 NA NA NA NA NA LTS-039 chr12 113806806 114261229 454424 * c(SDS, SDSL, PLBD2, LHX5, RBM19) 0.406659568301249 3 0.0872314927840475 0.537422011857041 266 0.197187666732676 2 1 1 -6.77932059131632 LTS-039 chr12 114261230 114282393 21164 * RBM19 NA 0 NA 0.815 1 NA NA NA NA NA LTS-039 chr12 114282394 115112712 830319 * c(TBX5-AS1, TBX5, TBX3, RBM19) 0.310522354314483 3 0.0448441746495573 0.947811023932463 280 0.394989155515579 4 3 1 -6.79460144158907 LTS-039 chr12 115112713 115114154 1442 * TBX3 NA 0 NA 1.551 1 NA NA NA NA NA LTS-039 chr12 115114155 116397817 1283663 * c(MED13L, TBX3) 0.328 1 NA 1.77154712480037 111 0.79633227613936 9 9 0 -5.76460372414621 LTS-039 chr12 116397818 117537121 1139304 * c(LINC00173, MIR4472-2, MED13L, FBXW8, TESC, MAP1LC3B2, MIR620, C12orf49, RNFT2, HRK) 0.337335621712877 7 0.0500090468006016 0.907440659464119 683 0.374972291624626 4 3 1 -7.09190921529131 LTS-039 chr12 117537122 117628312 91191 * c(FBXO21, TESC) 0.329811778076001 3 0.0355011736895181 1.42303649042176 140 0.723331977902911 13 9 4 -6.8083362751097 LTS-039 chr12 117628313 117628316 4 * character(0) NA 0 NA 0.708 1 NA NA NA NA NA LTS-039 chr12 117628317 118469571 841255 * c(KSR2, NOS1, RFC5) 0.241817659741702 8 0.166871154316308 0.795656711140359 523 0.370872277969127 4 3 1 -6.84654946012598 LTS-039 chr12 118469572 118504235 34664 * c(VSIG10, WSB2, RFC5) 0.299165898104751 3 0.0291433239925259 1.29806626559802 139 0.494418792675104 4 3 1 -6.74682062979401 LTS-039 chr12 118504236 119772835 1268600 * c(LINC00934, CCDC60, HSPB8, PEBP1, TAOK3, VSIG10, SUDS3, SRRM4) 0.38920818150888 20 0.0553573082704296 0.789178436920734 699 0.384832661758521 3 2 1 -6.85137489081729 LTS-039 chr12 119772836 120105740 332905 * c(CCDC60, TMEM233) 0.144382422913381 3 0.202649944485559 0.570725797125407 145 0.700506014971673 2 2 0 -6.73876244799587 LTS-039 chr12 120105741 120105817 77 * PRKAB1 NA 0 NA 0.996 1 NA NA NA NA NA LTS-039 chr12 120105818 120166432 60615 * c(MIR1178, CIT, PRKAB1) 0.38279246144526 5 0.0155499196139402 1.77690260022844 247 0.513101143168703 8 5 3 -6.74354823660873 LTS-039 chr12 120166433 120166461 29 * CIT NA 0 NA 1.459 1 NA NA NA NA NA LTS-039 chr12 120166462 120628270 461809 * c(MIR4498, GCN1, RAB35, CIT, BICDL1) 0.271269778562232 3 0.0689420046125728 0.826384572795665 625 0.366332450861026 4 3 1 -6.83097121852884 LTS-039 chr12 120628271 120632331 4061 * GCN1 NA 0 NA 1.676 1 NA NA NA NA NA LTS-039 chr12 120632332 120638701 6370 * c(GCN1, RPLP0) NA 0 NA 2.18328957784812 50 0.691803452387088 11 NA NA -5.76441149381942 LTS-039 chr12 120638702 121671933 1033232 * c(PXN-AS1, NRAV, MIR4700, SPPL3, COX6A1, SIRT4, GATC, HNF1A-AS1, ACADS, MSI1, P2RX4, P2RX7, POP5, TRIAP1, PLA2G1B, PXN, RPLP0, C12orf43, HNF1A, COQ5, UNC119B, OASL, DYNLL1, SRSF9, CABP1, MLEC, RNF10) 0.336113461110477 43 0.0803206337636532 0.939582561695885 1586 0.428952226836853 4 3 1 -6.87736792624741 LTS-039 chr12 121671934 121675477 3544 * character(0) NA 0 NA 2.597 1 NA NA NA NA NA LTS-039 chr12 121675478 121678328 2851 * CAMKK2 NA 0 NA 2.05748122005146 58 0.579460326609978 10 NA NA -5.76441876076368 LTS-039 chr12 121678329 123435394 1757066 * c(CLIP1-AS1, CAMKK2, TMEM120B, WDR66, MLXIP, SETD1B, ABCB9, LRRC43, HCAR1, MORN3, HPD, HCAR2, LINC01089, IL31, ANAPC5, RHOF, ZCCHC8, DIABLO, PSMD9, BCL7A, CLIP1, VPS33A, RSRC2, B3GNT4, VPS37B, RNF34, CCDC62, KDM2B, ORAI1, DENR, HCAR3, HIP1R, KNTC1) 0.345437103120667 57 0.0852815989989608 0.885962329007633 3390 0.441197683025991 4 3 1 -6.91663362158125 LTS-039 chr12 123435395 123444107 8713 * ABCB9 NA 0 NA 2.017 1 NA NA NA NA NA LTS-039 chr12 123444108 123469250 25143 * c(ABCB9, ARL6IP4, PITPNM2, OGFOD2) 0.345191519123038 4 0.0704698517097915 1.32958272809868 166 0.355705979853709 6 4 2 -6.74477814589321 LTS-039 chr12 123469251 123998887 529637 * c(MIR4304, LOC100507091, MPHOSPH9, SNRNP35, RILPL2, RILPL1, KMT5A, SBNO1, PITPNM2, CDK2AP1, C12orf65) 0.33731440784711 31 0.0973596370408764 0.828330705947019 832 0.370485748205316 4 3 1 -6.84399515807353 LTS-039 chr12 123998888 125348505 1349618 * c(MIR3908, ZNF664-FAM101A, TMED2, RFLNA, ZNF664, DNAH10, EIF2B1, ATP6V0A2, GTF2H3, RILPL1, DDX55, TCTN2, CCDC92, SCARB1, NCOR2) 0.413404945044345 57 0.09150049303454 1.24021373128582 1842 0.551962307013348 6 3 3 -6.75464131067958 LTS-039 chr12 125348506 125396179 47674 * SCARB1 NA 0 NA 3.982 1 NA NA NA NA NA LTS-039 chr12 125396180 125400176 3997 * c(MIR5188, UBC) 0.401 1 NA 3.20261774921896 46 1.24392873881359 17 17 0 -5.76441031952527 LTS-039 chr12 125400177 125431340 31164 * MIR5188 NA 0 NA 0.919 1 NA NA NA NA NA LTS-039 chr12 125431341 125627874 196534 * c(BRI3BP, DHX37, AACS) 0.387038222128182 31 0.119814686661465 1.10728951912118 533 0.650720808128008 5 3 2 -6.75004140044123 LTS-039 chr12 125627875 128729045 3101171 * c(LOC100128554, LINC00943, LINC00507, TMEM132B, LINC00944, LINC00939, FLJ37505, LOC440117) 0.362731650389361 17 0.110141920480164 0.618739324594012 289 0.313154240065394 3 2 1 -7.08400613621496 LTS-039 chr12 128729046 128752015 22970 * TMEM132C NA 0 NA 0.801 1 NA NA NA NA NA LTS-039 chr12 128752016 129442249 690234 * c(MIR3612, SLC15A4, GLT1D1, TMEM132C) 0.346023879449015 12 0.0518666705616576 0.885163697815506 287 0.461032019140156 3 2 1 -6.96225520100453 LTS-039 chr12 129442250 129467396 25147 * GLT1D1 NA 0 NA 0.536 1 NA NA NA NA NA LTS-039 chr12 129467397 130388231 920835 * c(TMEM132D, GLT1D1) 0.239568748109825 2 0.0325269119345812 0.462102646999689 213 0.252452193355535 1 1 0 -7.33839777024057 LTS-039 chr12 130388232 130521255 133024 * LOC100190940 NA 0 NA 0.912 1 NA NA NA NA NA LTS-039 chr12 130521256 130827705 306450 * c(LOC100190940, FZD10, FZD10-AS1, PIWIL1) 0.274677117859089 4 0.180353356867382 0.991141124951175 91 0.538714006642097 4 3 1 -6.74974442170969 LTS-039 chr12 130827706 130830258 2553 * PIWIL1 NA 0 NA 0.617 1 NA NA NA NA NA LTS-039 chr12 130830259 131297020 466762 * c(STX2, RIMBP2, PIWIL1) 0.403 1 NA 0.591821597000833 373 0.214208194880218 2 2 0 -5.83586393815993 LTS-039 chr12 131297021 131438784 141764 * c(STX2, ADGRD1, RAN) NA 0 NA 1.47945962248554 88 0.629285798647411 7 NA NA -5.76462763792066 LTS-039 chr12 131438785 133331838 1893054 * c(LOC100130238, LRCOL1, LINC01257, PGAM5, P2RX2, ANKLE2, ADGRD1, DDX51, EP400NL, MMP17, GALNT9, POLE, EP400, FBRSL1, PXMP2, SFSWAP, SNORA49, NOC4L, PUS1, ULK1) 0.342850752705493 55 0.0726310866466608 0.76790091414275 2151 0.343626807538707 3 2 1 -6.87861558307403 LTS-039 chr12 133331839 133332049 211 * ANKLE2 NA 0 NA 2.35 1 NA NA NA NA NA LTS-039 chr12 133332050 133349453 17404 * c(ANKLE2, GOLGA3) 0.386830213914097 9 0.0407147939260958 1.32419195590892 173 0.628915396764251 8 5 3 -6.73566753263852 LTS-039 chr12 133349454 133782683 433230 * c(ZNF605, ZNF891, ZNF268, GOLGA3, CHFR, ZNF10, ZNF140) 0.3317961722644 29 0.0955933892019385 0.852942339368424 1112 0.408091980505778 4 3 1 -6.81210021573032 LTS-039 chr12 133782684 133787193 4510 * ZNF268 NA 0 NA 0.572 1 NA NA NA NA NA LTS-039 chr12 133787194 133811705 24512 * ANHX 0.1666201588114 2 0.192333044482741 0.568510840550415 82 0.503878814030862 2 2 0 -6.73399977358867 LTS-039 chr12 133811706 133812708 1003 * ANHX NA 0 NA 0.514035464723426 19 0.109046049610577 2 NA NA -5.76446211996144 LTS-039 chr13 19271620 19271676 57 * character(0) 0.359 1 NA 0.269 1 NA NA NA NA NA LTS-039 chr13 19271677 20077443 805767 * c(ANKRD26P3, LINC00421, RNU6-52P, LINC00417, ANKRD20A9P, LINC00442, TUBA3C, TPTE2) 0.248559418919023 2 0.0247487373415292 0.413519216018236 141 0.280893276036997 1 1 0 -6.93303465708255 LTS-039 chr13 20077444 20207814 130371 * c(MPHOSPH8, TPTE2) NA 0 NA 1.207 1 NA NA NA NA NA LTS-039 chr13 20207815 23250957 3043143 * c(MIR4499, LINC00424, SAP18, GJB6, EEF1AKMT1, SKA3, MICU2, FGF9, ZDHHC20, LATS2, GJA3, GJB2, CRYL1, IL17D, MPHOSPH8, PSPC1, XPO4, MIPEPP3, ZMYM2, MRPL57, IFT88, ZMYM5) 0.172384563891495 12 0.124084892739046 0.643659204785319 1666 0.319067944153341 3 3 0 -7.01392738457328 LTS-039 chr13 23250958 23253282 2325 * character(0) NA 0 NA 0.302 1 NA NA NA NA NA LTS-039 chr13 23253283 24164435 911153 * c(SACS-AS1, LINC00327, SACS, TNFRSF19, SGCG, BASP1P1) 0.157239098662281 7 0.0593825371156009 0.464117607467375 413 0.204396978861422 2 2 0 -6.96132137302021 LTS-039 chr13 24164436 24167460 3025 * TNFRSF19 NA 0 NA 0.723 1 NA NA NA NA NA LTS-039 chr13 24167461 24881235 713775 * c(MIR2276, SPATA13-AS1, SPATA13, C1QTNF9B, ANKRD20A19P, MIPEP, C1QTNF9B-AS1, TNFRSF19) 0.114904614901542 9 0.0951241878341734 0.642159862360755 496 0.338862498870985 3 3 0 -6.77310750062687 LTS-039 chr13 24881236 24890047 8812 * c(SPATA13, C1QTNF9) NA 0 NA 0.21 1 NA NA NA NA NA LTS-039 chr13 24890048 24896225 6178 * c(SPATA13, C1QTNF9) 0.214 1 NA 0.258169515385771 39 0.119582133446749 1 1 0 -5.78845919634629 LTS-039 chr13 24896226 24896241 16 * c(SPATA13, C1QTNF9) NA 0 NA 0.384 1 NA NA NA NA NA LTS-039 chr13 24896242 25486085 589844 * c(PARP4, SPATA13, C1QTNF9, TPTE2P6, ATP12A, CENPJ, RNF17) 0.145958917629708 27 0.0820234488048762 0.520598488469833 612 0.353771769695873 2 2 0 -6.75178357325005 LTS-039 chr13 25486086 25746320 260235 * c(AMER2, PABPC3, CENPJ, TPTE2P1) 0.201752647860925 4 0.0447762958122561 0.360651789426238 330 0.232909083172435 1 1 0 -7.19479143261413 LTS-039 chr13 25746321 26971428 1225108 * c(CDK8, SHISA2, ATP8A2, RNF6, MTMR6, NUP58) 0.152242101135117 10 0.0494282869979889 0.545038494972951 959 0.23151121078884 2 2 0 -6.75763406187545 LTS-039 chr13 26971429 26974559 3131 * CDK8 NA 0 NA 0.326 1 NA NA NA NA NA LTS-039 chr13 26974560 27649566 675007 * c(CDK8, WASF3, USP12, GPR12) 0.238603911550408 4 0.105113827190654 0.417805067600027 277 0.129543913973081 1 1 0 -7.40250078941889 LTS-039 chr13 27649567 27664071 14505 * USP12 NA 0 NA 2.033 1 NA NA NA NA NA LTS-039 chr13 27664072 28241502 577431 * c(USP12, MTIF3, LNX2, SNORD102, GTF3A, RASL11A, POLR1D, RPL21, SNORA27) 0.092914086224399 13 0.0636022294400408 0.882608268978555 349 0.454773312270487 4 4 0 -6.73405319569638 LTS-039 chr13 28241503 28771395 529893 * c(PAN3-AS1, CDX2, GSX1, FLT3, PAN3, PDX1, ATP5EP2, POLR1D, URAD) 0.106044034754311 12 0.0389625888941345 0.654281324941456 406 0.378873457736798 3 3 0 -6.81881746708335 LTS-039 chr13 28771396 29274426 503031 * c(FLT1, PAN3, SLC46A3, POMP) 0.109683450930767 7 0.0233798855347721 0.998475772553566 415 0.420671073259231 4 4 0 -6.97355577325233 LTS-039 chr13 29274427 30110390 835964 * c(MTUS2-AS1, MTUS2, SLC46A3, SLC7A1) 0.118019698375776 3 0.0319426569548204 0.702046460561464 372 0.269609429976665 3 3 0 -6.73543358435148 LTS-039 chr13 30110391 30338519 228129 * SLC7A1 NA 0 NA 0.884 1 NA NA NA NA NA LTS-039 chr13 30338520 31287965 949446 * c(LINC00426, LINC00297, USPL1, ALOX5AP, HMGB1, LINC00544, UBL3, KATNAL1) 0.07923702140676 8 0.0255591051710121 1.03235590060496 459 0.644275026851444 5 5 0 -6.73499717176881 LTS-039 chr13 31287966 31309609 21644 * ALOX5AP NA 0 NA 0.535 1 NA NA NA NA NA LTS-039 chr13 31309610 31526877 217268 * c(TEX26-AS1, LINC00398, TEX26, ALOX5AP, MEDAG) 0.219829282108757 2 0.0466690475583121 0.635268380669091 110 0.205191504968959 2 2 0 -7.68237264435808 LTS-039 chr13 31526878 31789303 262426 * c(HSPH1, TEX26, B3GLCT) NA 0 NA 1.30868555876211 153 0.650782576652374 6 NA NA -5.76512194436941 LTS-039 chr13 31789304 31796948 7645 * B3GLCT NA 0 NA 0.748 1 NA NA NA NA NA LTS-039 chr13 31796949 33054730 1257782 * c(FRY, N4BP2L2, RXFP2, B3GLCT, EEF1DP3, ZAR1L, BRCA2, N4BP2L1) 0.11906160134955 9 0.0347794639278858 0.663247948513232 1043 0.282221217091191 3 3 0 -6.77902507701833 LTS-039 chr13 33054731 33344607 289877 * c(MINOS1P1, N4BP2L2, N4BP2L2-IT2, PDS5B) NA 0 NA 0.982818617754308 218 0.67681724008833 5 NA NA -5.76728462499748 LTS-039 chr13 33344608 37524184 4179577 * c(MIR548F5, SPG20-AS1, CCDC169-SOHLH2, LINC00423, LINC00457, STARD13-AS, PDS5B, SPG20, NBEA, ALG5, SERTM1, SMAD9, SOHLH2, RFC3, RFXAP, CCDC169, CCNA1, STARD13, DCLK1, KL) 0.126572988016446 36 0.0567925981651589 0.691716891943956 1661 0.354028012191843 3 3 0 -6.75788606911933 LTS-039 chr13 37524185 37526536 2352 * ALG5 NA 0 NA 0.992 1 NA NA NA NA NA LTS-039 chr13 37526537 37622782 96246 * c(EXOSC8, ALG5, SUPT20H) NA 0 NA 1.10814012600462 219 0.565051406394847 5 NA NA -5.76460688341247 LTS-039 chr13 37622783 37625581 2799 * SUPT20H NA 0 NA 0.463 1 NA NA NA NA NA LTS-039 chr13 37625582 38357541 731960 * c(POSTN, CSNK1A1L, LINC00547, SUPT20H, TRPC4) 0.145375514669795 8 0.0521370104354177 0.53274055911998 265 0.254376193571485 2 2 0 -6.78037352365767 LTS-039 chr13 38924001 38937143 13143 * UFM1 NA 0 NA 0.972689951988791 93 0.42102832049319 4 NA NA -5.76474613527815 LTS-039 chr13 38937144 39261176 324033 * c(LINC00366, FREM2) NA 0 NA 0.613 1 NA NA NA NA NA LTS-039 chr13 39261177 39266556 5380 * FREM2 0.106 1 NA 0.453959279340356 119 0.125221155166298 2 2 0 -5.76943740870658 LTS-039 chr13 39266557 39597330 330774 * c(STOML3, FREM2, PROSER1) 0.135368789157569 11 0.0253409478189676 0.704940965574921 398 0.301260169048002 3 3 0 -6.96060306225156 LTS-039 chr13 39597331 39598569 1239 * PROSER1 NA 0 NA 1.458 1 NA NA NA NA NA LTS-039 chr13 39598570 39616411 17842 * c(NHLRC3, PROSER1) 0.087 1 NA 1.97530817161955 68 0.95109101623289 10 10 0 -5.76441013652534 LTS-039 chr13 39616412 39618181 1770 * NHLRC3 NA 0 NA 0.559 1 NA NA NA NA NA LTS-039 chr13 39618182 44971822 5353641 * c(MIR320D1, MIR4305, OR7E37P, VWA8-AS1, TPTE2P5, MIR5006, LINC00332, SMIM2-IT1, SLC25A15, LHFP, MRPS31, WBP4, AKAP11, LINC00284, FAM216B, LACC1, DGKH, CCDC122, ELF1, VWA8, FOXO1, SUGT1P3, RGCC, DNAJC15, NHLRC3, SERP2, LINC00548, ENOX1, COG6, LINC00598, MIR621, NAA16, KBTBD7, TNFSF11, KBTBD6, EPSTI1, MTRF1) 0.109513701860413 31 0.059313038694201 0.821303133789807 2224 1.34611286874275 4 4 0 -6.77924345708643 LTS-039 chr13 44971823 45007686 35864 * c(SERP2, TSC22D1) NA 0 NA 1.452 1 NA NA NA NA NA LTS-039 chr13 45007687 45150697 143011 * c(TSC22D1-AS1, TSC22D1) 0.0423760070967591 3 0.0207846096908265 1.46856529753638 132 0.691228454292497 10 10 0 -6.74941210655411 LTS-039 chr13 45150698 45513346 362649 * c(LINC00330, TSC22D1-AS1, TSC22D1) NA 0 NA 0.793 1 NA NA NA NA NA LTS-039 chr13 45513347 45515334 1988 * NUFIP1 0.06 1 NA 0.458538791508462 46 0.115105672935911 2 2 0 -5.76633581120388 LTS-039 chr13 45515335 45515422 88 * NUFIP1 NA 0 NA 0.789 1 NA NA NA NA NA LTS-039 chr13 45515423 45915437 400015 * c(NUFIP1, GTF2F2, KCTD4, GPALPP1, SNORA31, TPT1) 0.0787681996717329 2 0.0106066017177982 1.04943717741352 262 0.587579815117151 5 5 0 -6.73471379241225 LTS-039 chr13 45915438 45915512 75 * TPT1-AS1 0.042 1 NA 0.035 1 NA NA NA NA NA LTS-039 chr13 45915513 50466938 4551426 * c(LINC00462, TPT1-AS1, CPB2-AS1, LINC00563, LINC00441, MED4-AS1, LPAR6, RCBTB2, ARL11, CPB2, ESD, ERICH6B, SPERT, CTAGE10P, FNDC3A, ZC3H13, LRCH1, SLC25A30, SIAH3, MLNR, MED4, HTR2A, KPNA3, LCP1, PHF11, RCBTB1, NUDT15, CYSLTR2, RB1, RUBCNL, CDADC1, CAB39L, COG3, SETDB2, EBPL, SUCLA2, ITM2B) 0.117879415097546 48 0.0522787087304652 0.790176245279385 2954 0.474156524160001 3 3 0 -6.86515511003589 LTS-039 chr13 50466939 50466990 52 * CTAGE10P NA 0 NA 1.955 1 NA NA NA NA NA LTS-039 chr13 50466991 53422599 2955609 * c(MIR759, MIR3613, MIR4703, MIR5693, DLEU7-AS1, RNASEH2B-AS1, MRPS31P5, TRIM13, DLEU1, SUGT1, LECT1, WDFY2, HNRNPA1L2, ST13P4, DLEU7, FAM124A, TPTE2P3, CTAGE10P, INTS6, CKAP2, KCNRG, LINC00282, GUCY1B2, NEK5, MIR16-1, ALG11, NEK3, PCDH8, VPS36, ATP7B, THSD1, SPRYD7, LINC00371, SERPINE3, RNASEH2B, DHRS12, CCDC70, DLEU2, UTP14C) 0.0783505132327234 36 0.0358528296906311 1.03652982381985 2019 0.733492526068464 5 5 0 -6.73719597322928 LTS-039 chr13 53422600 53626174 203575 * c(OLFM4, PCDH8) 0.0282425737387485 3 0.0115036226178249 2.97753200072831 72 0.983971096993357 16 16 0 -6.73383329082386 LTS-039 chr13 54615309 58299389 3684081 * c(MIR1297, MIR5007, PCDH17, PRR20B, PRR20D, PRR20E) NA 0 NA 0.440093443247049 92 0.188238059723648 2 NA NA -7.40885069821367 LTS-039 chr13 58299390 58299438 49 * PCDH17 NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr13 58299439 67799022 9499584 * c(MIR3169, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, PCDH17, OR7E156P, PCDH9, PCDH20, TDRD3, DIAPH3) 0.137665431224866 4 0.0262472220752343 0.823188946599291 504 0.384660984241114 3 3 0 -7.73559539230527 LTS-039 chr13 67799023 70682608 2883586 * c(LINC00550, PCDH9, KLHL1, ATXN8OS) 0.256937727741734 7 0.0823164625090267 0.407049741341346 188 0.173841596165921 1 1 0 -7.82431388073755 LTS-039 chr13 72012091 73340255 1328165 * c(DACH1, DIS3, MZT1, BORA) 0.190400212956388 3 0.0603351749258534 0.602095645727345 392 0.286640950449616 2 2 0 -7.03129109174787 LTS-039 chr13 73340256 73342933 2678 * DIS3 NA 0 NA 0.754 1 NA NA NA NA NA LTS-039 chr13 73342934 73689474 346541 * c(PIBF1, DIS3, KLF5) 0.215304455782321 2 0.115965512114594 0.930238814656197 257 0.410104217752969 5 4 1 -6.80396943008382 LTS-039 chr13 73689475 73689484 10 * character(0) NA 0 NA 0.677 1 NA NA NA NA NA LTS-039 chr13 73689485 84452986 10763502 * c(MIR3665, RBM26-AS1, LINC00331, LINC00381, LINC00446, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, SPRY2, KLF12, SLITRK1, KCTD12, CLN5, SLAIN1, COMMD6, EDNRB, MYCBP2, FBXL3, LINC00347, LMO7, POU4F1, NDFIP2, RBM26, CTAGE11P, BTF3P11, LMO7DN, ACOD1, UCHL3, RNF219, SCEL, TBC1D4) 0.163739041516008 37 0.0799158528925491 0.560863944314678 2523 0.241403818478854 2 2 0 -7.05340499635826 LTS-039 chr13 84452987 88330825 3877839 * c(MIR4500, LINC00333, LINC00351, SLITRK1, SLITRK5, MIR4500HG, SLITRK6) NA 0 NA 0.334416825721854 240 0.163845578587686 1 NA NA -5.94584772365812 LTS-039 chr13 88330826 95279743 6948918 * c(GPC6, GPC5-AS1, GPC6-AS2, LINC00353, LINC00379, LINC00433, LINC00559, LINC00410, GPR180, DCT, GPC5, TGDS, SLITRK5, MIR19B1, MIR17HG, MIR622) 0.143920159395541 7 0.0945069914269385 0.592931751078655 400 0.332991559121422 2 2 0 -7.17928941750065 LTS-039 chr13 95279744 95361934 82191 * c(SOX21, GPR180) 0 1 NA 7.341 1 NA NA NA NA NA LTS-039 chr13 95361935 95363938 2004 * SOX21 NA 0 NA 1.93942594527777 43 1.3600378011651 10 NA NA -5.76441034363265 LTS-039 chr13 95363939 96263770 899832 * c(CLDN10-AS1, ABCC4, SOX21, DZIP1, CLDN10) 0.0955419312013933 11 0.0496132313730191 0.792487477984213 382 0.368982263449806 4 4 0 -6.78773482452881 LTS-039 chr13 96263771 96264207 437 * DZIP1 NA 0 NA 0.506 1 NA NA NA NA NA LTS-039 chr13 96264208 101290033 5025826 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR548AN, PCCA-AS1, LINC00359, MBNL2, FARP1, RNF113B, CLYBL, GPR183, DZIP1, DOCK9, HS6ST3, OXGR1, GPR18, UBAC2, IPO5, PCCA, UGGT2, DNAJC3, RAP2A, SLC15A1, MIR623, ZIC2, STK24, TMTC4, ZIC5, GGACT, TM9SF2) 0.125939548834852 43 0.0551398805134209 0.627198179187559 2404 0.34361161432603 3 3 0 -7.12026950566056 LTS-039 chr13 101290034 101290068 35 * TMTC4 NA 0 NA 0.352 1 NA NA NA NA NA LTS-039 chr13 101290069 103338222 2048154 * c(MIR2681, MIR4705, NALCN-AS1, METTL21C, FGF14, NALCN, FGF14-IT1, FGF14-AS2, TPP2, TMTC4, ITGBL1) 0.212519238592354 18 0.0936973991868455 0.462561459629491 618 0.202588146792229 2 2 0 -7.43454120192955 LTS-039 chr13 103338223 103410740 72518 * c(METTL21C, CCDC168) 0.192126247012331 15 0.0633390724216743 0.349849995454257 473 0.108038022768744 1 1 0 -7.09009979092435 LTS-039 chr13 103410741 103410782 42 * CCDC168 0.419 1 NA 0.748 1 NA NA NA NA NA LTS-039 chr13 103410783 103493372 82590 * c(BIVM-ERCC5, BIVM, CCDC168, KDELC1, TEX30) 0.137 1 NA 0.522469965870591 207 0.191631044462581 2 2 0 -5.7647465801786 LTS-039 chr13 103493373 103498715 5343 * c(BIVM-ERCC5, ERCC5, BIVM) NA 0 NA 1.27993267808566 39 0.47493752980784 6 NA NA -5.76441672935977 LTS-039 chr13 103498716 103501464 2749 * c(BIVM-ERCC5, ERCC5) NA 0 NA 0.456 1 NA NA NA NA NA LTS-039 chr13 103501465 107187313 3685849 * c(BIVM-ERCC5, MIR548AS, METTL21EP, LINC00343, EFNB2, ERCC5, DAOA, DAOA-AS1, SLC10A2, LINC00460) 0.183239428873367 8 0.0339747805627309 0.511831824961359 371 0.209730920798349 2 2 0 -7.06571567748529 LTS-039 chr13 107187314 107187337 24 * EFNB2 NA 0 NA 0.833 1 NA NA NA NA NA LTS-039 chr13 107187338 107863099 675762 * c(LINC00443, EFNB2, LINC00551, ARGLU1, FAM155A) NA 0 NA 1.05977519410359 105 0.451486740178243 5 NA NA -5.76467978701946 LTS-039 chr13 107863100 108183491 320392 * FAM155A NA 0 NA 0.475 1 NA NA NA NA NA LTS-039 chr13 108183492 109507958 1324467 * c(TNFSF13B, MYO16, LIG4, FAM155A, ABHD13) 0.225948621340747 3 0.0666808318284448 0.458626689472034 316 0.209218333280118 2 2 0 -7.63265106977707 LTS-039 chr13 109507959 109518455 10497 * MYO16 NA 0 NA 0.742 1 NA NA NA NA NA LTS-039 chr13 109518456 109860352 341897 * c(MYO16-AS1, MYO16) 0.198141052649997 6 0.0218395665402651 0.672042840144468 209 0.27707850632232 6 5 1 -7.85306185570169 LTS-039 chr13 110406191 111329515 923325 * c(COL4A2-AS1, COL4A1, COL4A2, RAB20, NAXD, CARS2, IRS2) 0.114024533102688 30 0.0447629259569779 1.03236546969369 943 0.453297902391557 4 4 0 -6.89346214644906 LTS-039 chr13 111329516 111335397 5882 * CARS2 NA 0 NA 1.797 1 NA NA NA NA NA LTS-039 chr13 111335398 111642462 307065 * c(LINC00346, ING1, ANKRD10, CARS2) 0.089 1 NA 1.54099306236997 241 0.627768709803458 8 8 0 -5.76540063141702 LTS-039 chr13 111642463 111991625 349163 * c(TEX29, ARHGEF7) 0.0957966060966626 7 0.063200361662618 0.909409548241536 282 0.312868948564404 4 4 0 -6.73389196129815 LTS-039 chr13 111991626 111992119 494 * TEX29 NA 0 NA 0.479 1 NA NA NA NA NA LTS-039 chr13 111992120 113153485 1161366 * c(TUBGCP3, TEX29, SPACA7, SOX1) 0.0483977640627034 3 0.0540277706369604 0.638713885821292 224 0.423062499429205 4 4 0 -7.55918746888138 LTS-039 chr13 113153486 113158275 4790 * TUBGCP3 NA 0 NA 1.187 1 NA NA NA NA NA LTS-039 chr13 113158276 113835566 677291 * c(MCF2L-AS1, TUBGCP3, F7, F10, ATP11A, MCF2L, ATP11AUN, PCID2, PROZ) 0.0813061708503387 22 0.030617313948482 1.03872073244621 927 0.50512810719644 5 5 0 -6.73727278061847 LTS-039 chr13 113835567 113838628 3062 * PCID2 NA 0 NA 1.198 1 NA NA NA NA NA LTS-039 chr13 113838629 114792842 954214 * c(LINC00552, GAS6-AS2, LINC00565, ADPRHL1, RASA3, GAS6, TMEM255B, LAMP1, ATP4B, TMCO3, DCUN1D2, PCID2, GRK1, GAS6-AS1, TFDP1, GRTP1, CUL4A) 0.0770461433951079 15 0.0536508110265774 1.17908019701824 989 0.52118018242584 5 5 0 -6.75304029904585 LTS-039 chr13 114792843 115092817 299975 * c(RASA3, CHAMP1, UPF3A, CDC16) NA 0 NA 1.29389979765434 267 0.538953518577815 6 NA NA -5.76506037868469 LTS-039 chr14 19434116 20248828 814713 * c(BMS1P17, POTEG, OR4Q3, OR4M1, POTEM, OR11H2) 0.254 1 NA 0.724077785394853 77 0.290648814005333 3 3 0 -5.76625764758817 LTS-039 chr14 20248829 20404825 155997 * c(OR4N2, OR4K2, OR4M1, OR4K5, OR4K1) 0.326014775233217 8 0.093302024935919 0.671706829849846 130 0.235360283330872 3 2 1 -6.87567299499421 LTS-039 chr14 20404826 20712010 307185 * c(OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, OR4K1, OR4K15) 0.351164570067172 9 0.0509005020713068 0.433700913938639 278 0.653513033448371 3 2 1 -6.92775920785188 LTS-039 chr14 20712011 20754345 42335 * character(0) NA 0 NA 4.294 1 NA NA NA NA NA LTS-039 chr14 20754346 20820519 66174 * c(SNORD126, PARP2, CCNB1IP1, RPPH1, TTC5) 0.363247454443103 8 0.0881844657521947 0.905528041749602 207 0.476348216070865 3 2 1 -6.74800974106469 LTS-039 chr14 20820520 20822243 1724 * PARP2 NA 0 NA 0.54 1 NA NA NA NA NA LTS-039 chr14 20822244 20920357 98114 * c(PARP2, KLHL33, OSGEP, TEP1) 0.384943343816479 22 0.0954765218981412 0.650097696970403 537 0.231362626715548 3 2 1 -6.75443429301317 LTS-039 chr14 20920358 20920511 154 * OSGEP NA 0 NA 1.342 1 NA NA NA NA NA LTS-039 chr14 20920512 20943367 22856 * c(APEX1, PNP, OSGEP, TMEM55B) 0.374 1 NA 1.30620058226925 155 0.478200252623013 6 6 0 -5.76451520146582 LTS-039 chr14 20943368 21109121 165754 * c(RNASE11, RNASE10, OR6S1, RNASE9, PNP, RNASE12) 0.330608622776575 7 0.104713895925994 0.575458723551272 161 0.365351373775816 3 2 1 -6.85482594008579 LTS-039 chr14 21109122 21216146 107025 * c(EDDM3A, ANG, OR6S1, RNASE4) 0.215041286944564 11 0.0588659494105039 1.19200689225462 84 0.422866032666939 6 5 1 -6.73559225410453 LTS-039 chr14 21216147 21216249 103 * EDDM3A NA 0 NA 2.318 1 NA NA NA NA NA LTS-039 chr14 21216250 21270282 54033 * c(EDDM3A, RNASE1, RNASE6, EDDM3B) 0.208907274092813 2 0.0120208152801713 2.14976168828788 67 0.732482784987491 11 9 2 -6.74873032235126 LTS-039 chr14 21270283 21359746 89464 * c(RNASE1, RNASE3) NA 0 NA 0.769 1 NA NA NA NA NA LTS-039 chr14 21359747 21424644 64898 * c(RNASE2, RNASE3, ECRP) 0.247355476490305 5 0.0458344848340199 0.657925798070928 60 0.516709782873824 5 4 1 -6.7676266494862 LTS-039 chr14 21424645 21457919 33275 * character(0) NA 0 NA 2.811 1 NA NA NA NA NA LTS-039 chr14 21457920 21470084 12165 * c(SLC39A2, METTL17) 0.308 1 NA 1.45304950423433 120 0.493725099290554 7 7 0 -5.76441584463995 LTS-039 chr14 21470085 21484929 14845 * NDRG2 NA 0 NA 0.678 1 NA NA NA NA NA LTS-039 chr14 21484930 22005422 520493 * c(SUPT16H, TPPP2, RNASE8, LINC00641, HNRNPC, SNORD8, OR5AU1, RNASE13, ZNF219, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, SALL2, TMEM253, SNORD9, RNASE7, RAB2B, TOX4) 0.334520899983466 14 0.0535818671148784 0.915553333339936 1563 0.465984734849444 6 4 2 -6.95655781054794 LTS-039 chr14 22005423 22033604 28182 * character(0) NA 0 NA 0.548 1 NA NA NA NA NA LTS-039 chr14 22033605 22471696 438092 * c(OR10G3, OR10G2, OR4E2) 0.373652088660764 36 0.0708670284002773 0.52746175697899 412 0.215079322766311 2 1 1 -7.09879283723756 LTS-039 chr14 22471697 22772379 300683 * character(0) 0.376138860925232 18 0.0740296045710172 0.734542257338409 299 0.22027713739995 3 2 1 -6.73962998051935 LTS-039 chr14 22772380 22782996 10617 * character(0) NA 0 NA 1.95 1 NA NA NA NA NA LTS-039 chr14 22782997 23013094 230098 * character(0) 0.354636339633048 9 0.0399085760763829 1.80424144705795 451 0.691507293653975 9 6 3 -6.74808971338969 LTS-039 chr14 23013095 23746394 733300 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, HOMEZ, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.376242220636329 49 0.0571266867001171 0.946960220662254 1866 0.42432060280427 3 2 1 -6.93163318135458 LTS-039 chr14 23746395 23754980 8586 * HOMEZ NA 0 NA 1.707 1 NA NA NA NA NA LTS-039 chr14 23754981 23794818 39838 * c(BCL2L2-PABPN1, HOMEZ, BCL2L2, PABPN1, PPP1R3E) 0.331894854849833 2 0.0190918830920368 1.36537959808282 190 0.594665933354048 19 13 6 -6.8917657418598 LTS-039 chr14 23794819 23903003 108185 * c(MIR208B, BCL2L2-PABPN1, EFS, CMTM5, MIR208A, MYH6, MYH7, SLC22A17, IL25, PABPN1) 0.399944471800256 18 0.0688427449293806 0.609593317598941 639 0.259694563507618 3 2 1 -6.85913566412319 LTS-039 chr14 23903004 23924757 21754 * MYH7 NA 0 NA 1.686 1 NA NA NA NA NA LTS-039 chr14 23924758 23991000 66243 * c(NGDN, THTPA, ZFHX2) 0.261802616468824 2 0.0777817459305202 0.961113340980372 108 0.566485667370413 5 4 1 -6.75451638086438 LTS-039 chr14 23991001 23991126 126 * c(THTPA, ZFHX2) NA 0 NA 0.266 1 NA NA NA NA NA LTS-039 chr14 23991127 24004621 13495 * c(THTPA, ZFHX2) 0.339 1 NA 0.450529037966671 238 0.285712598827591 2 2 0 -5.76707445659968 LTS-039 chr14 24004622 24025234 20613 * c(THTPA, ZFHX2) NA 0 NA 1.884 1 NA NA NA NA NA LTS-039 chr14 24025235 24038922 13688 * c(THTPA, JPH4, AP1G2) NA 0 NA 1.04809084159349 188 0.468827066028064 5 NA NA -5.76442943807763 LTS-039 chr14 24038923 24546900 507978 * c(DHRS2, DHRS4, DHRS4L2, DHRS4-AS1, DHRS4L1, JPH4, CARMIL3, CPNE6) 0.34608311232215 15 0.0561890516365023 0.67795513928008 581 0.301973933343225 3 2 1 -6.85763871805456 LTS-039 chr14 24546901 24912092 365192 * c(NEDD8-MDP1, IRF9, TM9SF1, RIPK3, DHRS1, LTB4R, MDP1, FITM1, NOP9, ADCY4, KHNYN, TINF2, CIDEB, TSSK4, CHMP4A, NEDD8, NFATC4, NRL, EMC9, PCK2, GMPR2, RNF31, LTB4R2, SDR39U1, PSME1, PSME2, NYNRIN, RABGGTA, CBLN3, TGM1, IPO4, DCAF11, CPNE6, REC8) 0.35927291853806 72 0.0564556343879608 1.03844853199938 2519 0.470956922141974 6 4 2 -6.77120111692274 LTS-039 chr14 24912093 24970725 58633 * character(0) NA 0 NA 0.413 1 NA NA NA NA NA LTS-039 chr14 24970726 30396673 5425948 * c(MIR4307, LINC00645, MIR548AI, CMA1, CTSG, FOXG1, STXBP6, GZMH, GZMB, LINC01551, NOVA1, PRKD1) 0.332395298740056 16 0.141585295258135 0.632320660456142 657 0.360320552610986 3 2 1 -7.10593959722825 LTS-039 chr14 31028493 31092748 64256 * c(SCFD1, G2E3) 0.212539378328921 2 0.293449314192417 1.11781411159432 193 0.569029151113099 6 5 1 -6.73457631869943 LTS-039 chr14 31092749 31097331 4583 * SCFD1 NA 0 NA 0.664 1 NA NA NA NA NA LTS-039 chr14 31097332 32628934 1531603 * c(LOC100506071, AP4S1, DTD2, COCH, SCFD1, HECTD1, HEATR5A, GPR33, STRN3, ARHGAP5, MIR624, NUBPL, ARHGAP5-AS1) 0.378738156484011 8 0.0394984176898265 0.758376973213685 1349 0.335246218145739 3 2 1 -6.78865922411076 LTS-039 chr14 32628935 32736496 107562 * character(0) NA 0 NA 0.334 1 NA NA NA NA NA LTS-039 chr14 32736497 32902914 166418 * AKAP6 NA 0 NA 0.384969733123554 102 0.177048668789604 1 NA NA -5.79261648473052 LTS-039 chr14 32902915 34272843 1369929 * c(NPAS3, AKAP6) 0.400253823282989 6 0.0257947022984695 0.687633952866881 442 0.247211755278665 3 2 1 -7.42953421358621 LTS-039 chr14 34272844 34272920 77 * NPAS3 NA 0 NA 1.077 1 NA NA NA NA NA LTS-039 chr14 34272921 34420256 147336 * c(EGLN3, NPAS3) 0.371 1 NA 1.39299791209021 122 0.506750701769021 7 7 0 -5.76468770621206 LTS-039 chr14 34420257 34561423 141167 * EGLN3 NA 0 NA 0.398 1 NA NA NA NA NA LTS-039 chr14 34561424 35579933 1018510 * c(CFL2, BAZ1A, SPTSSA, IGBP1P1, FAM177A1, PPP2R3C, EAPP, SNX6, SRP54) 0.373679928870058 11 0.0702851335632223 0.923360494570665 676 0.542830114114749 3 2 1 -6.87186031423149 LTS-039 chr14 35579934 35585742 5809 * PPP2R3C NA 0 NA 1.893 1 NA NA NA NA NA LTS-039 chr14 35585743 35786731 200989 * c(PPP2R3C, PSMA6, KIAA0391) NA 0 NA 1.41842193923856 147 0.794181056004093 7 NA NA -5.76443045677131 LTS-039 chr14 35786732 35870662 83931 * character(0) NA 0 NA 5.023 1 NA NA NA NA NA LTS-039 chr14 35870663 35873862 3200 * NFKBIA 0.392424534838667 3 0.0481283007526064 3.77943127860971 52 1.87799721581512 18 11 7 -6.73439141385027 LTS-039 chr14 35873863 35873919 57 * NFKBIA NA 0 NA 0.764 1 NA NA NA NA NA LTS-039 chr14 35873920 36017813 143894 * c(RALGAPA1, NFKBIA, INSM2) 0.360519693424909 2 0.000707106781186548 0.547001725156431 117 0.254999682737619 17 11 6 -10.5815715729429 LTS-039 chr14 36017814 36018409 596 * RALGAPA1 NA 0 NA 0.852 1 NA NA NA NA NA LTS-039 chr14 36018410 36789912 771503 * c(PTCSC3, LINC00609, RALGAPA1, MBIP, BRMS1L) 0.271667664938424 3 0.237632068542947 0.868404335315351 398 0.499928885212677 4 3 1 -6.74144479763587 LTS-039 chr14 36789913 36840543 50631 * character(0) NA 0 NA 0.433 1 NA NA NA NA NA LTS-039 chr14 36840544 37050688 210145 * c(SFTA3, NKX2-8, NKX2-1) 0.361363417264571 3 0.0716542624924249 0.542852345768513 156 0.26952934708724 3 2 1 -6.86826415187417 LTS-039 chr14 37050689 37051433 745 * NKX2-8 NA 0 NA 1.101 1 NA NA NA NA NA LTS-039 chr14 37051434 37642594 591161 * c(SLC25A21-AS1, MIR4503, NKX2-8, PAX9, SLC25A21) 0.321454306833051 6 0.0712179752590594 1.42771013778091 226 0.826218773992423 7 5 2 -6.74602025853107 LTS-039 chr14 37642595 38278130 635536 * c(SLC25A21-AS1, MIPOL1, FOXA1) 0.366751935168187 16 0.11447807286405 0.670213357050339 415 0.377840204363906 3 2 1 -6.74332757078415 LTS-039 chr14 38278131 38281533 3403 * character(0) NA 0 NA 0.431 1 NA NA NA NA NA LTS-039 chr14 38281534 39501502 1219969 * c(SEC23A, CLEC14A, LINC00639, SSTR1) 0.341694352049471 6 0.175224047055953 0.444754118426816 192 0.282376312663676 2 1 1 -7.15811241333599 LTS-039 chr14 39501503 39901700 400198 * c(LOC100288846, SEC23A, NA, TRAPPC6B, FBXO33, MIA2, PNN, GEMIN2) 0.334267371788424 18 0.139433681849067 0.777578590257757 757 0.519289861272497 3 2 1 -6.7817504591379 LTS-039 chr14 42355769 45369934 3014166 * c(C14orf28, LRFN5, FSCB) 0.373025694085891 3 0.030347981810987 0.470840601072299 157 0.215021581284521 2 1 1 -8.87875197465947 LTS-039 chr14 45369935 45587350 217416 * c(SNORD127, C14orf28, FKBP3, FAM179B, KLHL28, PRPF39) NA 0 NA 0.682745726394431 415 0.324857135828294 3 NA NA -5.76647772094469 LTS-039 chr14 45587351 45589981 2631 * FKBP3 NA 0 NA 1.802 1 NA NA NA NA NA LTS-039 chr14 45589982 45620733 30752 * c(FKBP3, FANCM) NA 0 NA 1.37652023004431 69 0.993548452192554 7 NA NA -5.76444048410929 LTS-039 chr14 45620734 45623038 2305 * FANCM NA 0 NA 0.647 1 NA NA NA NA NA LTS-039 chr14 45623039 50044636 4421598 * c(MIR548Y, LINC00871, LINC00648, RPL10L, MDGA2, MIS18BP1, FANCM, RPS29, NEMF) 0.319431072496393 6 0.151008167549529 0.662044627882943 480 0.34821743101452 3 2 1 -6.91295477745129 LTS-039 chr14 50044637 50050291 5655 * c(RPS29, NEMF) NA 0 NA 1.357 1 NA NA NA NA NA LTS-039 chr14 50050292 50313047 262756 * c(LRR1, KLHDC1, KLHDC2, MGAT2, POLE2, DNAAF2, RPL36AL, RPS29, NEMF) 0.352721713510973 13 0.0776912858526353 1.28080472833981 632 0.540018930357387 6 4 2 -6.73376069329024 LTS-039 chr14 50313048 50318230 5183 * NEMF NA 0 NA 2.274 1 NA NA NA NA NA LTS-039 chr14 50318231 50606778 288548 * c(NA, LINC01599, LINC01588, ARF6, SOS2, VCPKMT, NEMF) 0.230356421143266 10 0.011798775831039 2.1203689705914 261 1.48074067889001 14 11 3 -6.75453510557198 LTS-039 chr14 50606779 50611836 5058 * SOS2 NA 0 NA 1.082 1 NA NA NA NA NA LTS-039 chr14 50611837 50734579 122743 * c(SOS2, L2HGDH) NA 0 NA 1.18023032301525 136 0.503544310142304 6 NA NA -5.76544011407589 LTS-039 chr14 50734580 51722636 988057 * c(MAP4K5, TRIM9, ABHD12B, ATP5S, ATL1, NIN, PYGL, SAV1, L2HGDH, TMX1, CDKL1) 0.368046854128342 30 0.0910561340066109 0.840341933086675 1367 0.388799310273994 3 2 1 -6.84086973422994 LTS-039 chr14 51722637 52794768 1072132 * c(FRMD6-AS2, FRMD6, FRMD6-AS1, NID2, LINC00640, C14orf166, GNG2, PTGDR, PTGER2, TMX1) 0.349438600848016 18 0.104692828003136 0.60033407752031 621 0.333720885769025 3 2 1 -6.92027962293225 LTS-039 chr14 52794769 53133217 338449 * c(GPR137C, ERO1A, PTGER2, TXNDC16) 0.319865808598485 11 0.082368462632027 0.932728817897954 364 0.432886935077198 4 3 1 -6.77889896911536 LTS-039 chr14 53133218 53138306 5089 * ERO1A NA 0 NA 2.454 1 NA NA NA NA NA LTS-039 chr14 53138307 53180705 42399 * c(ERO1A, PSMC6) 0.322 1 NA 2.08023620070201 65 0.82572886305885 11 11 0 -5.76445663699254 LTS-039 chr14 53180706 53184822 4117 * PSMC6 NA 0 NA 1.5 1 NA NA NA NA NA LTS-039 chr14 53184823 53324524 139702 * c(FERMT2, PSMC6, GNPNAT1, STYX) 0.285341970697028 4 0.0325205063511215 1.16026748878271 266 0.448373596897348 8 6 2 -6.82377503576442 LTS-039 chr14 53324525 57937222 4612698 * c(KTN1-AS1, OTX2-AS1, MIR4308, MIR5580, CNIH1, CDKN3, EXOC5, CGRRF1, FERMT2, WDHD1, SOCS4, NAA30, ATG14, SAMD4A, GCH1, GMFB, TBPL2, KTN1, LGALS3, OTX2, TMEM260, FBXO34, C14orf105, AP5M1, PELI2, RPL13AP3, LINC00520, BMP4, DDHD1, MAPK1IP1L, DLGAP5) 0.355662876189134 33 0.114938010301733 0.857117562967266 2782 0.443496965263733 4 3 1 -6.90452331430117 LTS-039 chr14 57937223 57937379 157 * C14orf105 NA 0 NA 0.629 1 NA NA NA NA NA LTS-039 chr14 57937380 58606161 668782 * c(C14orf37, SLC35F4, C14orf105) 0.352217107115251 10 0.131941106390524 0.577615002456973 283 0.378951929927266 3 2 1 -6.86398884571927 LTS-039 chr14 58606162 58666885 60724 * c(C14orf37, ACTR10) NA 0 NA 1.12 1 NA NA NA NA NA LTS-039 chr14 58666886 60063164 1396279 * c(L3HYPDH, C14orf37, DAAM1, TIMM9, PSMA3-AS1, TOMM20L, DACT1, JKAMP, ACTR10, PSMA3, ARID4A, RTN1, GPR135, CCDC175, KIAA0586) 0.332573161743789 12 0.123346119320857 0.970038311238453 1119 0.467483325056291 4 3 1 -6.80803389483083 LTS-039 chr14 60063165 60865119 801955 * c(LRRC9, DHRS7, PPM1A, RTN1, PCNX4) 0.137101340706943 3 0.245033331066068 0.753395265288444 731 0.300953108477449 3 3 0 -6.7536866460755 LTS-039 chr14 60865120 60867038 1919 * character(0) NA 0 NA 0.247672096025794 43 0.0973356296851341 1 NA NA -5.77897819047576 LTS-039 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.934 1 NA NA NA NA NA LTS-039 chr14 60899979 61442884 542906 * c(C14orf39, MNAT1, SIX6, SIX4, TRMT5, SIX1) 0.373 1 NA 0.93393981823431 550 0.47170380270147 4 4 0 -5.7675414218637 LTS-039 chr14 61442885 61444250 1366 * TRMT5 NA 0 NA 2.051 1 NA NA NA NA NA LTS-039 chr14 61444251 62164737 720487 * c(SLC38A6, TMEM30B, HIF1A, FLJ22447, PRKCH, TRMT5) 0.196321457393393 6 0.119032348544419 1.52509646202041 437 0.789771067872825 7 6 1 -6.74089666598391 LTS-039 chr14 62164738 62187112 22375 * HIF1A NA 0 NA 0.9 1 NA NA NA NA NA LTS-039 chr14 62187113 62263120 76008 * c(HIF1A-AS2, HIF1A, SNAPC1) NA 0 NA 0.987271739013258 158 0.324589011155685 5 NA NA -5.76735550750844 LTS-039 chr14 62263121 63839461 1576341 * c(GPHB5, KCNH5, RHOJ, LINC00643, SNAPC1, SYT16) 0.339815444567669 6 0.0397676585514746 0.607442722559779 327 0.279362738079057 3 2 1 -7.37122713475329 LTS-039 chr14 63839462 63839548 87 * character(0) NA 0 NA 1.521 1 NA NA NA NA NA LTS-039 chr14 63839549 68238926 4399378 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, GPHN, VTI1B, WDR89, RDH12, PPP1R36, FAM71D, TMEM229B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, GPX2, HSPA2, RAB15, ARG2, MAX, LINC00238, TEX21P, MTHFD1, RDH11, ATP6V1D, PIGH, PPP2R5E, PLEKHH1, MPP5, FUT8-AS1, SPTB, ZBTB25, SGPP1, CHURC1, AKAP5) 0.355789480080986 25 0.0676354936405435 0.771329512846385 4055 0.371982287708758 3 2 1 -6.88662872995811 LTS-039 chr14 68238927 68353923 114997 * c(ZFYVE26, RAD51B) NA 0 NA 1.13611559434761 209 0.447687138438715 5 NA NA -5.76556459584091 LTS-039 chr14 68353924 68713810 359887 * RAD51B NA 0 NA 4.514 1 NA NA NA NA NA LTS-039 chr14 68713811 69255593 541783 * c(RAD51B, ZFP36L1) NA 0 NA 4.29227980584909 148 1.75148275003804 20 NA NA -5.76612704476849 LTS-039 chr14 69255594 69263026 7433 * ZFP36L1 0.258895264510808 5 0.0347390270445216 2.49306050424198 106 1.84372505178425 20 15 5 -6.73606977272773 LTS-039 chr14 69263027 69328510 65484 * character(0) NA 0 NA 0.496 1 NA NA NA NA NA LTS-039 chr14 69328511 69818937 490427 * c(ACTN1-AS1, EXD2, GALNT16, ACTN1, DCAF5) 0.387499070247693 10 0.0723743355371532 0.867108216745745 528 0.494752137342508 3 2 1 -6.81038299000886 LTS-039 chr14 69818938 69819024 87 * GALNT16 NA 0 NA 1.099 1 NA NA NA NA NA LTS-039 chr14 69819025 69927242 108218 * c(ERH, SLC39A9, GALNT16) 0 1 NA 1.46993060388001 134 1.08213673021151 7 7 0 -5.76444579608075 LTS-039 chr14 69927243 69928254 1012 * SLC39A9 NA 0 NA 0.9 1 NA NA NA NA NA LTS-039 chr14 69928255 70037705 109451 * c(PLEKHD1, SLC39A9, CCDC177) NA 0 NA 0.708924146648596 91 0.204127438109165 3 NA NA -5.76442708170344 LTS-039 chr14 70037706 70125179 87474 * c(CCDC177, SUSD6) NA 0 NA 1.741 1 NA NA NA NA NA LTS-039 chr14 70125180 70243180 118001 * c(LOC100289511, SRSF5, SLC10A1, SUSD6) 0.31 1 NA 1.48670137607362 196 0.51258677668941 7 7 0 -5.76477315253614 LTS-039 chr14 70243181 70244995 1815 * SLC10A1 NA 0 NA 0.964 1 NA NA NA NA NA LTS-039 chr14 70244996 70512512 267517 * c(SMOC1, SLC8A3, SLC10A1) 0.374135926428224 6 0.0283054765019068 0.899500125534164 189 0.439257742821987 3 2 1 -6.78529811136234 LTS-039 chr14 70512513 70512648 136 * SLC8A3 NA 0 NA 0.566 1 NA NA NA NA NA LTS-039 chr14 70512649 70991428 478780 * c(SYNJ2BP-COX16, ADAM21P1, ADAM20P1, COX16, SYNJ2BP, SLC8A3, ADAM21, ADAM20) 0.355447600866272 20 0.0913191482773753 0.535724383135116 421 0.352787496553151 3 2 1 -6.93056441261994 LTS-039 chr14 70991429 73989983 2998555 * c(MED6, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, SNORD56B, HEATR4, MAP3K9, ZFYVE1, PSEN1, RBM25, DPF3, NUMB, ADAM20, PAPLN, RGS6) 0.347473113968161 30 0.119830800254589 0.743383186256227 2223 0.344149011007818 3 2 1 -6.78583764926778 LTS-039 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.47 1 NA NA NA NA NA LTS-039 chr14 74003792 74021139 17348 * c(HEATR4, ACOT1) NA 0 NA 0.328017581093583 43 0.171517024522339 1 NA NA -5.7659404398676 LTS-039 chr14 74021140 74035792 14653 * c(ACOT2, HEATR4, ACOT1) NA 0 NA 1.019 1 NA NA NA NA NA LTS-039 chr14 74035793 74164138 128346 * c(ACOT2, ACOT4, ACOT1, ACOT6, DNAL1) 0.367369697775923 4 0.107687820419334 0.765624724727218 189 0.459133207046115 3 2 1 -6.73574376701301 LTS-039 chr14 74164139 74178497 14359 * c(DNAL1, PNMA1) NA 0 NA 2.186 1 NA NA NA NA NA LTS-039 chr14 74178498 74365308 186811 * c(MIR4505, PTGR2, ZNF410, ELMSAN1, PNMA1) 0.332407560934128 14 0.0717304554687773 1.05781955206544 379 0.458225222793862 6 4 2 -6.8065786081168 LTS-039 chr14 74365309 74370636 5328 * ZNF410 NA 0 NA 0.719 1 NA NA NA NA NA LTS-039 chr14 74370637 74947082 576446 * c(MIR4709, NPC2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, SYNDIG1L, BBOF1, LIN52, ENTPD5) 0.329936678841078 26 0.084496235692212 0.674176020864335 1098 0.391559945684209 3 2 1 -6.87882176805019 LTS-039 chr14 74947083 75079047 131965 * c(NPC2, ISCA2, LTBP2) 0.327437546535956 9 0.0622015094493516 1.05801521362436 368 0.420713716661319 7 5 2 -6.81572184634591 LTS-039 chr14 75079048 75127856 48809 * character(0) NA 0 NA 0.331 1 NA NA NA NA NA LTS-039 chr14 75127857 75422480 294624 * c(DLST, PROX2, FCF1, PGF, YLPM1, RPS6KL1, AREL1) 0.385293540774566 24 0.0677471722496673 0.759911219562589 811 0.296793947233634 3 2 1 -6.76790698742796 LTS-039 chr14 75422481 75469606 47126 * character(0) NA 0 NA 1.476 1 NA NA NA NA NA LTS-039 chr14 75469607 75988846 519240 * c(BATF, TMED10, JDP2, FOS, MLH3, LINC01220, ZC2HC1C, EIF2B2, NEK9, ACYP1) 0.388263319201961 10 0.0423505214450385 1.15190825429841 784 0.47668045664527 5 3 2 -6.85610532983509 LTS-039 chr14 75988847 77273119 1284273 * c(BATF, C14orf1, IFT43, ESRRB, VASH1, TTLL5, ANGEL1, FLVCR2, GPATCH2L, TGFB3) 0.350857366101326 14 0.112813397419644 0.777937910217578 1066 0.336213371015173 3 2 1 -6.80660294390727 LTS-039 chr14 77273120 77583657 310538 * c(LRRC74A, ANGEL1, IRF2BPL, CIPC) 0.361384797279001 13 0.0657880240056205 1.16156220359518 318 0.636929219042147 6 4 2 -6.74150255864632 LTS-039 chr14 77583658 77597610 13953 * character(0) NA 0 NA 0.315 1 NA NA NA NA NA LTS-039 chr14 77597611 77746828 149218 * c(MIR1260A, ZDHHC22, POMT2, TMEM63C, NGB) 0.35264776944365 7 0.0626041988550745 0.559858997189986 365 0.192879971747795 3 2 1 -6.91967183242765 LTS-039 chr14 77746829 77941032 194204 * c(AHSA1, NOXRED1, ISM2, SAMD15, TMED8, GSTZ1, POMT2, VIPAS39) 0.349268122033824 8 0.0749970237504701 0.766079448222283 636 0.366550181593472 3 2 1 -6.78837494727204 LTS-039 chr14 77941033 77972462 31430 * c(ISM2, SPTLC2) 0.403 1 NA 0.436289532539995 77 0.147027150254043 2 2 0 -5.79775382161947 LTS-039 chr14 77972463 78234910 262448 * c(SNW1, C14orf178, SLIRP, ALKBH1, SPTLC2) 0.418415394737167 2 0.0615182899632297 0.806872472111711 414 0.440138013591923 4 2 2 -6.7649552400337 LTS-039 chr14 78234911 81612665 3377755 * c(DIO2-AS1, CEP128, DIO2, C14orf178, ADCK1, TSHR, NRXN3) 0.304574943395818 13 0.179289123327629 0.581091402389256 783 0.290349898602561 2 1 1 -7.20704674526179 LTS-039 chr14 81612666 81641830 29165 * GTF2A1 NA 0 NA 1.15 1 NA NA NA NA NA LTS-039 chr14 81641831 83157152 1515322 * c(GTF2A1, SEL1L, SNORA79, STON2) 0.448701163126027 5 0.0479718667554224 0.870680717345041 511 0.399379878007797 4 2 2 -6.81964357716433 LTS-039 chr14 83157153 83157717 565 * character(0) NA 0 NA 0.348 1 NA NA NA NA NA LTS-039 chr14 83157718 89221019 6063302 * c(LINC00911, PTPN21, EML5, FLRT2, GALC, LOC283585, LINC01146, KCNK10, SPATA7, ZC3H14, GPR65) 0.398237596302922 41 0.0891351809770131 0.641495958419755 1291 0.329264558987375 3 2 1 -7.12580515364405 LTS-039 chr14 89221020 89258731 37712 * EML5 NA 0 NA 1.665 1 NA NA NA NA NA LTS-039 chr14 89258732 91780499 2521768 * c(SNORA11B, FOXN3, TTC8, TTC7B, EML5, FOXN3-AS2, FOXN3-AS1, LINC00642, CCDC88C, NRDE2, TDP1, KCNK13, PSMC1, C14orf159, CALM1, GPR68, EFCAB11, RPS6KA5) 0.383868294897818 25 0.0592897405402767 0.819344197067766 1622 0.340337138889479 3 2 1 -7.01127706342553 LTS-039 chr14 91780500 91782020 1521 * CCDC88C NA 0 NA 1.339 1 NA NA NA NA NA LTS-039 chr14 91782021 93081871 1299851 * c(FBLN5, TC2N, SLC24A4, ATXN3, CCDC88C, NDUFB1, CPSF2, PPP4R3A, CATSPERB, RIN3, TRIP11) 0.319975275709117 24 0.134439577506031 0.99193522122364 1329 0.576123672997879 4 3 1 -6.77619835180705 LTS-039 chr14 93081872 93107472 25601 * RIN3 NA 0 NA 0.486 1 NA NA NA NA NA LTS-039 chr14 93107473 93581631 474159 * c(CHGA, ITPK1-AS1, ITPK1, LGMN, RIN3, GOLGA5) 0.389508739902403 11 0.0576080802413247 0.685754736176554 542 0.287672667234987 3 2 1 -6.79804797737293 LTS-039 chr14 93581632 93648546 66915 * c(ITPK1, MOAP1) NA 0 NA 2.403 1 NA NA NA NA NA LTS-039 chr14 93648547 93677184 28638 * c(TMEM251, UBR7, MOAP1, GON7) NA 0 NA 1.2212535104269 123 0.360468655326291 6 NA NA -5.76449535595566 LTS-039 chr14 93677185 93678383 1199 * UBR7 NA 0 NA 0.664 1 NA NA NA NA NA LTS-039 chr14 93678384 94400892 722509 * c(PRIMA1, FAM181A-AS1, COX8C, ASB2, UBR7, BTBD7, UNC79, FAM181A) 0.399124005411197 5 0.0627120403112512 0.77623657576961 828 0.338019002051622 3 2 1 -6.87911063804777 LTS-039 chr14 94400893 94401001 109 * ASB2 NA 0 NA 0.99 1 NA NA NA NA NA LTS-039 chr14 94401002 94642531 241530 * c(IFI27L1, LINC00521, IFI27, ASB2, DDX24, PPP4R4, OTUB2, IFI27L2) 0.360977737052306 15 0.0610114743306536 1.05162714282661 418 0.455931269650627 6 4 2 -6.76026908723763 LTS-039 chr14 94642532 94674775 32244 * PPP4R4 NA 0 NA 0.416 1 NA NA NA NA NA LTS-039 chr14 94674776 95108242 433467 * c(SERPINA3, SERPINA12, SERPINA11, SERPINA9, SERPINA13P, SERPINA5, SERPINA10, SERPINA1, SERPINA4, PPP4R4, SERPINA6) 0.301658538879608 23 0.1061411171926 0.755381216992232 706 0.392601550516173 4 3 1 -6.78002464638255 LTS-039 chr14 95108243 95109784 1542 * SERPINA13P NA 0 NA 0.884 1 NA NA NA NA NA LTS-039 chr14 95109785 96152824 1043040 * c(MIR3173, GSC, SYNE3, DICER1, TCL6, SNHG10, SERPINA13P, DICER1-AS1, GLRX5, LINC00341, CLMN, TCL1B) 0.371138822218439 10 0.0402994347906325 1.01104963028685 752 0.398301141185066 6 4 2 -7.00497699813804 LTS-039 chr14 96152825 96708589 555765 * c(TUNAR, C14orf132, BDKRB2, TCL1A, TCL1B) 0.326524542627174 9 0.133718713890182 0.682289412878409 311 0.2647912981845 3 2 1 -6.80727736851405 LTS-039 chr14 96708590 96708667 78 * BDKRB2 0.267 1 NA 1.741 1 NA NA NA NA NA LTS-039 chr14 96708668 97347973 639306 * c(PAPOLA, AK7, GSKIP, ATG2B, BDKRB1, BDKRB2, VRK1) 0.321438252086833 27 0.108216952608678 0.912136732826585 928 0.471414681164252 4 3 1 -6.76298362585415 LTS-039 chr14 97347974 97397573 49600 * character(0) NA 0 NA 0.442 1 NA NA NA NA NA LTS-039 chr14 97397574 102548069 5150496 * c(MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MEG9, MIR2392, MIR5698, CYP46A1, SLC25A29, DEGS2, LINC00239, DIO3, DYNC1H1, EML1, C14orf177, SLC25A47, LINC00523, CCDC85C, HSP90AA1, LINC01550, RTL1, MIR127, MIR134, MIR136, MIR154, MIR299, MIR323A, MIR337, MIR345, MIR376C, MIR369, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, EVL, PPP2R5C, MEG3, NA NA NA NA NA NA NA NA NA LTS-039 MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, BEGAIN, MIR487A, BCL11B, MIR539, MIR376A2, MIR487B, MIR411, MIR654, MIR655, MIR656, WARS, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-039 SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, MEG8, WDR25, SETD3, HHIPL1, DLK1, CCNK) 0.358789399791458 56 0.112385352837759 0.775408464231399 3294 0.366471224994171 3 2 1 -6.90714888317514 LTS-039 NA NA NA NA LTS-039 chr14 102548070 102548130 61 * HSP90AA1 NA 0 NA 1.316 1 NA NA NA NA NA LTS-039 chr14 102548131 102552760 4630 * HSP90AA1 0.375021140079963 2 0.0784888527117068 1.78938661844858 64 0.728377871990056 11 7 4 -6.73393778606635 LTS-039 chr14 102552761 102973606 420846 * c(ANKRD9, HSP90AA1, CINP, ZNF839, MOK, WDR20, TECPR2) 0.373717126846564 18 0.107775623251829 0.76899677456161 645 0.315395508756867 3 2 1 -6.74880218602928 LTS-039 chr14 102973607 102973611 5 * ANKRD9 NA 0 NA 1.007 1 NA NA NA NA NA LTS-039 chr14 102973612 103574003 600392 * c(MIR4309, ANKRD9, RCOR1, TRAF3, AMN, EXOC3L4, CDC42BPB) 0.413014143344176 15 0.119604626443406 0.971477713528737 758 0.435504068501248 5 3 2 -6.75293444136867 LTS-039 chr14 103574004 103923533 349530 * c(LINC00605, EIF5, MARK3, SNORA28, TNFAIP2, EXOC3L4) 0.349596668612288 9 0.129215367163163 1.54340624693291 341 1.114720896205 9 6 3 -6.7369090691053 LTS-039 chr14 103923534 104003433 79900 * c(CKB, TRMT61A, MARK3) 0.362481622723289 7 0.0376828873628335 0.941773516066136 216 0.408510654716895 6 4 2 -6.78061718963308 LTS-039 chr14 104003434 104022828 19395 * character(0) NA 0 NA 2.151 1 NA NA NA NA NA LTS-039 chr14 104022829 104029740 6912 * c(KLC1, APOPT1, BAG5) 0.320031786299973 5 0.0791517529812196 1.40394188599635 134 0.481778391395299 10 7 3 -6.7359842314918 LTS-039 chr14 104029741 104037970 8230 * c(KLC1, APOPT1) NA 0 NA 0.815 1 NA NA NA NA NA LTS-039 chr14 104037971 104583891 545921 * c(MIR203B, TDRD9, LINC00637, PPP1R13B, ASPG, KLC1, MIR203A, RD3L, XRCC3, ZFYVE21, APOPT1, C14orf2) 0.318341774204016 14 0.106597734136692 0.884260161297253 827 0.464762782088422 4 3 1 -6.75585363057462 LTS-039 chr14 104583892 104605118 21227 * KIF26A NA 0 NA 0.637 1 NA NA NA NA NA LTS-039 chr14 104605119 105071628 466510 * c(KIF26A, TMEM179, C14orf180) 0.357623683680644 23 0.0634176195264625 0.628175863758287 343 0.284079459741914 3 2 1 -6.81316865018957 LTS-039 chr14 105071629 105309257 237629 * c(ZBTB42, MIR4710, SIVA1, ADSSL1, LINC00638, AKT1, INF2) 0.288693421094631 22 0.0815805978121878 0.995685523022849 550 0.508240889801841 4 3 1 -6.74681505010909 LTS-039 chr14 105309258 105715445 406188 * c(AHNAK2, C14orf79, PLD4, NUDT14, CEP170B, BRF1, GPR132, JAG2, CDCA4, BTBD6) 0.365344850294048 35 0.113857222989544 0.710318139289741 1146 0.346086554789129 3 2 1 -6.73458311982987 LTS-039 chr14 105715446 106053691 338246 * c(CRIP1, CRIP2, PACS2, C14orf80, BRF1, TEX22, TMEM121, BTBD6, MTA1) 0.38693872852046 4 0.0573498038357587 1.0262152791932 775 0.529476542740401 5 3 2 -6.80744611259272 LTS-039 chr14 106053692 106053841 150 * character(0) NA 0 NA 0.525 1 NA NA NA NA NA LTS-039 chr14 106053842 106845507 791666 * c(ELK2AP, LINC00226, ADAM6, FAM30A) 0.308944724096303 35 0.103351468545058 0.473405474898534 575 0.202422193707553 2 1 1 -7.61586966543467 LTS-039 chr14 106845508 106856246 10739 * character(0) NA 0 NA 2.522 1 NA NA NA NA NA LTS-039 chr14 106856247 107178965 322719 * LINC00221 0.342724445829365 13 0.0738839179614436 0.668931244749714 141 0.491769660601532 3 2 1 -6.82345657060801 LTS-039 chr14 107178966 107283157 104192 * character(0) NA 0 NA 0.755211092106272 53 0.126200680490116 3 NA NA -5.77849330349219 LTS-039 chr15 20169987 20170011 25 * character(0) 0.373 1 NA 1.163 1 NA NA NA NA NA LTS-039 chr15 20170012 22690558 2520547 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.353522241378294 29 0.0853174310408422 0.597895062769828 309 0.614370186973855 3 2 1 -6.87688299505936 LTS-039 chr15 22690559 22833360 142802 * c(GOLGA8DP, GOLGA6L1) NA 0 NA 0.996 1 NA NA NA NA NA LTS-039 chr15 22833361 23048496 215136 * c(TUBGCP5, NIPA1, CYFIP1, NIPA2) 0.307071569194644 12 0.0628048323753592 0.976266083482317 524 0.42693167230994 4 3 1 -6.7525633228027 LTS-039 chr15 23048497 23807386 758890 * c(HERC2P7, MIR4508, NIPA1, LOC283683, GOLGA8IP, WHAMMP3, GOLGA8EP, HERC2P2, GOLGA6L22, GOLGA8S) 0.287872973635543 8 0.0887088939010224 0.750012672276102 183 0.368521292564378 4 3 1 -6.83894981276167 LTS-039 chr15 23807387 23810481 3095 * MKRN3 NA 0 NA 2.863 1 NA NA NA NA NA LTS-039 chr15 23810482 23889012 78531 * c(MAGEL2, MKRN3) NA 0 NA 1.40543933404996 73 0.714956390033633 7 NA NA -5.76444520188568 LTS-039 chr15 23889013 23889054 42 * MAGEL2 NA 0 NA 0.67 1 NA NA NA NA NA LTS-039 chr15 23889055 23932461 43407 * c(NDN, MAGEL2) NA 0 NA 0.578274255959203 109 0.152726620106963 2 NA NA -5.77259743146433 LTS-039 chr15 24920497 25415892 495396 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD116-26, SNORD116-28, SNORD116-29, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWARSN, IPW, SNRPN, SNORD116-19, PWAR5, SNURF) 0.360159901147066 4 0.0295789902915341 0.355290515610378 385 0.190291280520416 3 2 1 -9.33683727810286 LTS-039 chr15 25415893 25417865 1973 * c(SNORD115-2, SNORD109B, SNORD115-1, IPW) NA 0 NA 0.22 1 NA NA NA NA NA LTS-039 chr15 25417866 25496209 78344 * c(SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD115-24, SNORD115-27, SNORD115-28, SNORD109B, PWAR4, IPW) NA 0 NA 0.246152144952605 123 0.0698427490593085 1 NA NA -6.77385298084278 LTS-039 chr15 25496210 25514841 18632 * c(SNORD115-45, SNORD115-47, SNORD109B) NA 0 NA 0.635 1 NA NA NA NA NA LTS-039 chr15 25514842 29544730 4029889 * c(SNORD115-48, LOC100128714, LOC100289656, MIR4715, FAM189A1, GABRA5, GABRB3, GABRG3, APBA2, SNORD109B, HERC2P9, WHAMMP2, OCA2, LINC00929, ATP10A, PDCD6IPP2, GOLGA6L7P, UBE3A, HERC2) 0.385471922497734 29 0.12750202355199 0.500503227487469 1516 0.264099062155867 2 1 1 -6.92488147994254 LTS-039 chr15 29544731 29560381 15651 * c(FAM189A1, NSMCE3) NA 0 NA 1.042 1 NA NA NA NA NA LTS-039 chr15 29560382 30337572 777191 * c(FAM189A1, NSMCE3, TJP1) NA 0 NA 0.742436952716135 345 0.386634513244507 3 NA NA -5.7701484398975 LTS-039 chr15 30337573 30491509 153937 * c(DKFZP434L187, GOLGA8T) NA 0 NA 0.165 1 NA NA NA NA NA LTS-039 chr15 30491510 30665383 173874 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.230732984945646 67 0.146371294511862 0 NA NA -6.18973581347221 LTS-039 chr15 30665384 30700100 34717 * c(DKFZP434L187, CHRFAM7A) NA 0 NA 0.573 1 NA NA NA NA NA LTS-039 chr15 30700101 31632205 932105 * c(LOC100288637, FAN1, LOC283710, HERC2P10, MIR211, TRPM1, KLF13, MTMR10, ARHGAP11B) 0.422878366938879 11 0.145154651070066 0.6644892583776 521 0.290305437775675 3 2 1 -6.83886440475601 LTS-039 chr15 31632206 33357358 1725153 * c(WHAMMP1, LOC100996255, CHRNA7, OTUD7A, GREM1, FMN1, KLF13, SCG5, GOLGA8O, ARHGAP11A) 0.423594155220991 9 0.0575227008328982 0.542562707478652 931 0.253360372220397 2 1 1 -6.74991391995337 LTS-039 chr15 33357359 33358668 1310 * FMN1 NA 0 NA 1.127 1 NA NA NA NA NA LTS-039 chr15 33358669 33447350 88682 * FMN1 0.420434172567828 4 0.0262345192446898 0.92900474945589 121 0.299270411733006 4 2 2 -6.82442878924127 LTS-039 chr15 33447351 33603221 155871 * c(TMCO5B, FMN1, RYR3) NA 0 NA 0.35 1 NA NA NA NA NA LTS-039 chr15 33603222 35240585 1637364 * c(MIR1233-2, CHRM5, PGBD4, GOLGA8A, LPCAT4, NUTM1, GOLGA8B, EMC4, NOP10, EMC7, AVEN, GJD2, RYR3, ACTC1, KATNBL1, AQR, SLC12A6) 0.410131887741666 33 0.124337022144483 0.541365778081609 1716 0.347422997157015 2 1 1 -6.75256412231704 LTS-039 chr15 35240586 35245006 4421 * AQR NA 0 NA 0.748 1 NA NA NA NA NA LTS-039 chr15 35245007 35375565 130559 * c(ZNF770, AQR) 0.250686602969896 2 0.131521861300698 0.872113859087597 136 0.456767648774867 5 4 1 -6.74933873266135 LTS-039 chr15 35375566 35375605 40 * character(0) NA 0 NA 0.417 1 NA NA NA NA NA LTS-039 chr15 35375606 40318334 4942729 * c(MIR3942, DPH6-AS1, MIR4510, RASGRP1, GPR176, LOC145845, TMCO5A, CSNK1A1P1, SPRED1, FSIP1, FAM98B, C15orf53, C15orf54, MEIS2, EIF2AK4, THBS1, ANP32AP1, C15orf41, DPH6) 0.415399631336174 24 0.102309809409701 0.59245455652151 1772 0.276434829156356 2 1 1 -7.18206149541263 LTS-039 chr15 40318335 40321514 3180 * EIF2AK4 NA 0 NA 0.918 1 NA NA NA NA NA LTS-039 chr15 40321515 40477930 156416 * c(SRP14-AS1, EIF2AK4, SRP14, BUB1B, BMF) 0.440324800447319 7 0.0548908006864538 0.998955135269875 244 0.393373670573925 4 2 2 -6.75925173121695 LTS-039 chr15 40477931 40488736 10806 * BUB1B NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr15 40488737 40911274 422538 * c(ANKRD63, CHST14, BAHD1, RPUSD2, MRPL42P5, IVD, C15orf52, PLCB2, PAK6, KNL1, C15orf56, PHGR1, BUB1B, DISP2, C15orf57, KNSTRN) 0.451120160579759 21 0.0479322438448275 0.694958248455341 1318 0.331873092017519 4 2 2 -6.97980475975516 LTS-039 chr15 40911275 40912849 1575 * KNL1 NA 0 NA 0.398 1 NA NA NA NA NA LTS-039 chr15 40912850 40916481 3632 * KNL1 NA 0 NA 0.349600061042477 76 0.10512422058872 1 NA NA -5.76441096542426 LTS-039 chr15 40916482 41037504 121023 * c(RAD51-AS1, RMDN3, KNL1, RAD51) NA 0 NA 0.828278380541566 257 0.30251912830034 4 NA NA -5.76872870973779 LTS-039 chr15 41037505 41043540 6036 * RMDN3 NA 0 NA 1.583 1 NA NA NA NA NA LTS-039 chr15 41043541 41188287 144747 * c(RHOV, GCHFR, PPP1R14D, RMDN3, DNAJC17, VPS18, C15orf62, SPINT1, ZFYVE19) 0.310952767343522 9 0.0589597320211006 1.36449297128994 475 0.479570380623252 7 5 2 -6.73393893633773 LTS-039 chr15 41188288 41365703 177416 * c(DLL4, INO80, VPS18, CHAC1) 0.332684231355271 2 0.0403050865276332 0.86878672590425 373 0.31898574988701 6 4 2 -7.0466257817018 LTS-039 chr15 41365704 41366591 888 * INO80 NA 0 NA 0.587 1 NA NA NA NA NA LTS-039 chr15 41366592 41829230 462639 * c(CHP1, OIP5, EXD1, RTF1, RPAP1, ITPKA, LTK, NDUFAF1, NUSAP1, INO80, OIP5-AS1) 0.399161265317763 10 0.145287645723922 0.585190329971943 832 0.275650385045859 2 1 1 -6.7957460978324 LTS-039 chr15 41829231 41829461 231 * RPAP1 NA 0 NA 0.625797306338991 5 0.0763478879865055 3 NA NA -5.76479800356148 LTS-039 chr15 41829462 41849717 20256 * RPAP1 NA 0 NA 2.473 1 NA NA NA NA NA LTS-039 chr15 41849718 41865488 15771 * TYRO3 0.161 1 NA 1.26873379512319 93 0.436525221284182 6 6 0 -5.7644182129723 LTS-039 chr15 41865489 42434927 569439 * c(JMJD7, PLA2G4B, MIR4310, PLA2G4E, MAPKBP1, MGA, PLA2G4F, PLA2G4D, EHD4, SPTBN5, MIR626, TYRO3, JMJD7-PLA2G4B) 0.22145671009701 42 0.0502093468724356 1.18634611476178 1482 0.422455581491422 6 5 1 -6.76022124787163 LTS-039 chr15 42434928 42436124 1197 * PLA2G4F NA 0 NA 2.419 1 NA NA NA NA NA LTS-039 chr15 42436125 42470552 34428 * c(VPS39, PLA2G4F) 0.0884904791046752 2 0.149199530830362 1.69481855946192 204 0.686636052912093 5 5 0 -6.7444895955172 LTS-039 chr15 42470553 42556386 85834 * c(VPS39, TMEM87A, MIR627) 0.265473390907583 2 0.0261629509039022 1.08233864061542 142 0.312027429517905 8 6 2 -6.91778229147053 LTS-039 chr15 42556387 42570377 13991 * c(GANC, TMEM87A) NA 0 NA 2.37227935352233 41 0.783483223161549 12 NA NA -5.76441348120913 LTS-039 chr15 42570378 42570646 269 * GANC NA 0 NA 1.255 1 NA NA NA NA NA LTS-039 chr15 42570647 42758170 187524 * c(GANC, ZNF106, CAPN3) 0.333850832181651 3 0.0429107601113442 0.844934546379714 482 0.308951036499723 6 4 2 -7.05121797200707 LTS-039 chr15 42758171 42758173 3 * ZNF106 NA 0 NA 1.547 1 NA NA NA NA NA LTS-039 chr15 42758174 42943372 185199 * c(LRRC57, HAUS2, STARD9, ZNF106, SNAP23) 0.281239309307799 9 0.0363734488023583 1.20385099435823 257 0.56924099210177 8 6 2 -6.77322588187748 LTS-039 chr15 42943373 42944641 1269 * STARD9 NA 0 NA 0.859 1 NA NA NA NA NA LTS-039 chr15 42944642 43010935 66294 * STARD9 NA 0 NA 0.70255368436977 346 0.215979584625768 3 NA NA -5.76453925981945 LTS-039 chr15 43010936 43813295 802360 * c(TGM7, ZSCAN29, TTBK2, CDAN1, ADAL, UBR1, EPB42, CCNDBP1, TUBGCP4, MAP1A, STARD9, TP53BP1, TMEM62, TGM5, LCMT2) 0.333 1 NA 1.06303007501049 1550 0.406830802470067 5 5 0 -5.76462409926695 LTS-039 chr15 43813296 43813473 178 * MAP1A NA 0 NA 0.615 1 NA NA NA NA NA LTS-039 chr15 43813474 44002669 189196 * c(CKMT1B, CATSPER2, STRC, MAP1A, CKMT1A, PPIP5K1) 0.255494505799557 5 0.154013635759955 0.659699664355919 656 0.502601450586942 4 3 1 -6.81799840581043 LTS-039 chr15 44002670 44002792 123 * character(0) NA 0 NA 0.046 1 NA NA NA NA NA LTS-039 chr15 44002793 44029073 26281 * CATSPER2P1 NA 0 NA 0.429783967382438 69 0.289173941082514 1 NA NA -5.77228096058867 LTS-039 chr15 44029074 44029087 14 * CATSPER2P1 NA 0 NA 1.224 1 NA NA NA NA NA LTS-039 chr15 44029088 44086797 57710 * c(MIR1282, SERF2-C15ORF63, SERF2, PDIA3, CATSPER2P1, SERINC4, ELL3) NA 0 NA 1.29604828950308 232 0.542338689289116 6 NA NA -5.76454666087923 LTS-039 chr15 44086798 44095160 8363 * c(SERF2-C15ORF63, SERF2, HYPK, SERINC4, ELL3) NA 0 NA 2.2787165181563 120 0.676563904451547 12 NA NA -5.76441676501477 LTS-039 chr15 44095161 45050622 955462 * c(CASC4, TRIM69, PATL2, HYPK, MFAP1, CTDSPL2, B2M, EIF3J-AS1, PIN4P1, WDR76, SPG11, FRMD5, EIF3J) 0.294159119608876 5 0.18474387675915 1.07236788136083 1091 0.472725875888866 5 4 1 -6.77093707812804 LTS-039 chr15 45050623 45118645 68023 * TRIM69 NA 0 NA 0.487280209416909 47 0.237688177556712 2 NA NA -5.76968882518564 LTS-039 chr15 45118646 45119005 360 * character(0) NA 0 NA 3.322 1 NA NA NA NA NA LTS-039 chr15 45119006 45361255 242250 * c(TERB2, SORD) 0.23 1 NA 1.08685496984171 128 0.766794870885133 5 5 0 -5.76445577537182 LTS-039 chr15 45361256 45365580 4325 * SORD NA 0 NA 0.144 1 NA NA NA NA NA LTS-039 chr15 45365581 45407977 42397 * c(DUOXA2, DUOX2, SORD) NA 0 NA 0.626151459097064 250 0.249139913466164 3 NA NA -5.77105809761596 LTS-039 chr15 45407978 45901255 493278 * c(MIR147B, NA, BLOC1S6, GATM, HMGN2P46, DUOXA2, DUOX1, SLC30A4, SPATA5L1, C15orf48, SHF, DUOXA1, SLC28A2) 0.287172782198422 11 0.0573382309395113 1.08411008628391 926 0.581267348707158 4 3 1 -6.78590643496016 LTS-039 chr15 45901256 45901530 275 * BLOC1S6 NA 0 NA 0.899 1 NA NA NA NA NA LTS-039 chr15 45901531 49148336 3246806 * c(DUT, FBN1, CEP152, BLOC1S6, SLC24A5, SHC4, CTXN2, MYEF2, SQRDL, SLC12A1, SEMA6D) 0.286985133488209 22 0.115259841960811 0.800747457325601 1739 0.405681942189115 4 3 1 -6.87209819157503 LTS-039 chr15 49148337 49149868 1532 * SHC4 NA 0 NA 1.263 1 NA NA NA NA NA LTS-039 chr15 49149869 53043009 3893141 * c(GABPB1-AS1, LOC100129973, DCAF13P3, BCL2L10, MIR1266, NDUFAF4P1, MIR4716, MIR4713, MIR4712, GNB5, ARPP19, SLC27A2, LEO1, CYP19A1, FAM227B, FGF7, DMXL2, AP4E1, EID1, GABPB1, LYSMD2, GALK2, SCG3, TMOD3, TMOD2, HDC, GLDN, USP50, TNFAIP8L3, SHC4, MYO5A, TRPM7, FLJ10038, MYO5C, MAPK6, FAM214A, DTWD1, ATP8B4, SPPL2A, USP8, COPS2, SECISBP2L) 0.283604482913955 101 0.0961610180173786 0.941047983678724 4095 0.545988395776206 4 3 1 -6.76827170672146 LTS-039 chr15 53043010 54919439 1876430 * c(WDR72, ONECUT1, UNC13C) 0.254533831819242 8 0.166884851234103 0.667420396416498 507 0.398715248562128 3 2 1 -7.04100632719752 LTS-039 chr15 54919440 54919489 50 * UNC13C 0.356 1 NA 1.579 1 NA NA NA NA NA LTS-039 chr15 54919490 57017123 2097634 * c(DYX1C1-CCPG1, C15orf65, DYX1C1, PYGO1, PRTG, TEX9, UNC13C, NEDD4, RSL24D1, ZNF280D, MNS1, RAB27A, RFX7, MIR628, CCPG1, PIGB) 0.288001256317212 61 0.0777276244751979 0.871324164872094 1780 0.469125002255934 4 3 1 -6.74515132205405 LTS-039 chr15 57017124 58006753 989630 * c(MYZAP, GCOM1, LOC145783, LINC00926, ZNF280D, TCF12, POLR2M, CGNL1) 0.220143202333485 8 0.151596209432445 1.34026291863488 490 0.887063885364521 6 5 1 -6.73823788871011 LTS-039 chr15 58006754 59815741 1808988 * c(MIR2116, ADAM10, FAM81A, GCOM1, AQP9, LIPC, MYO1E, FAM63B, RNF111, HSP90AB4P, SLTM, POLR2M, ALDH1A2, CCNB2, LDHAL6B) 0.259395004538075 23 0.0421791773740618 1.05197533225312 1472 0.446847634451765 5 4 1 -6.78174254370984 LTS-039 chr15 59815742 59910291 94550 * c(FAM81A, GCNT3) NA 0 NA 0.692 1 NA NA NA NA NA LTS-039 chr15 59910292 59931446 21155 * c(GTF2A2, GCNT3) 0.253258677826001 3 0.0405133722779693 0.634011497437191 79 0.222596996643347 5 4 1 -6.81469888637999 LTS-039 chr15 59931447 59981788 50342 * c(GTF2A2, BNIP2) 0.292423196677841 22 0.0396483460183567 1.34863080875158 205 0.531734484969687 11 8 3 -6.75765748934571 LTS-039 chr15 59981789 60297028 315240 * FOXB1 NA 0 NA 0.64 1 NA NA NA NA NA LTS-039 chr15 60297029 60653347 356319 * c(FOXB1, ANXA2) 0.249 1 NA 0.744427578346947 86 0.385968317526274 3 3 0 -5.7673911775327 LTS-039 chr15 60653348 60656695 3348 * ANXA2 NA 0 NA 1.724 1 NA NA NA NA NA LTS-039 chr15 60656696 60690235 33540 * ANXA2 0.251 1 NA 2.34154054567429 40 1.0284752767431 12 12 0 -5.76441026342551 LTS-039 chr15 60690236 60711772 21537 * character(0) NA 0 NA 1.113 1 NA NA NA NA NA LTS-039 chr15 60711773 63569993 2858221 * c(LACTB, C2CD4A, MGC15885, C2CD4B, MIR190A, RPS27L, RAB8B, VPS13C, RORA, TPM1, ICE2, APH1B, TLN2) 0.29733227844024 36 0.0716252150333346 1.15280094765114 2013 0.580184835248702 7 5 2 -6.98683850606396 LTS-039 chr15 63569994 63570395 402 * APH1B NA 0 NA 4.312 1 NA NA NA NA NA LTS-039 chr15 63570396 63901078 330683 * c(USP3-AS1, FBXL22, CA12, APH1B, HERC1, USP3) 0.276458964593193 9 0.112535673356397 1.52865183716196 431 0.726524997405877 8 6 2 -6.73412942555858 LTS-039 chr15 63901079 63901193 115 * HERC1 NA 0 NA 0.767 1 NA NA NA NA NA LTS-039 chr15 63901194 65804456 1903263 * c(MIR1272, PDCD7, CLPX, MTFMT, SLC51B, ZNF609, DAPK2, RBPMS2, ANKDD1A, KBTBD13, UBAP1L, OAZ2, RASL12, SPG21, CSNK1G1, PPIB, DPP8, PARP16, IGDCC4, SNX1, SNX22, PIF1, PLEKHO2, FAM96A, CILP, HERC1, TRIP4, IGDCC3, KIAA0101) 0.309952434975332 34 0.0642902841937351 0.970578189719087 2898 0.505458173329105 4 3 1 -6.78716430291843 LTS-039 chr15 65804457 65804675 219 * DPP8 NA 0 NA 1.789 1 NA NA NA NA NA LTS-039 chr15 65804676 65871398 66723 * c(HACD3, DPP8, VWA9) 0.268283486627421 2 0.0205060966544099 1.44594711542425 120 0.524354625267305 12 9 3 -6.76632105036605 LTS-039 chr15 65871399 66784330 912932 * c(MIR4311, MIR4511, DENND4A, SNAPC5, DIS3L, TIPIN, MAP2K1, SCARNA14, VWA9, MEGF11, RAB11A, SLC24A1) 0.246883409066108 5 0.0748685514752356 1.04335851900172 992 0.442207660387192 5 4 1 -6.73516120653909 LTS-039 chr15 66784331 66784336 6 * SNAPC5 NA 0 NA 2.145 1 NA NA NA NA NA LTS-039 chr15 66784337 66801182 16846 * c(SNAPC5, ZWILCH, SNORD16, SNORD18A, SNORD18B, SNORD18C, RPL4) 0.458 1 NA 2.31877697615876 125 1.19685972811111 12 12 0 -5.76441049711902 LTS-039 chr15 66801183 68065129 1263947 * c(IQCH-AS1, C15orf61, LCTL, SMAD3, SMAD6, ZWILCH, MAP2K5, RPL4, IQCH, AAGAB) 0.311234719582978 10 0.0466971329122273 1.13160533185622 941 0.586895087503488 7 5 2 -6.85345269490021 LTS-039 chr15 68065130 68098918 33789 * MAP2K5 NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr15 68098919 68120430 21512 * c(SKOR1, MAP2K5) 0.33045854770522 6 0.0405462698654266 0.551677548442126 96 0.239239752571612 7 5 2 -7.0673564342254 LTS-039 chr15 68120431 68510852 390422 * c(SKOR1, CLN6, PIAS1, CALML4) 0.295657198450111 6 0.045801382802997 1.11561484499693 302 0.541316872982585 4 3 1 -6.77391548466294 LTS-039 chr15 68510853 68661670 150818 * c(FEM1B, ITGA11, CLN6) 0.279243690196522 9 0.0282842712474619 1.59265769684123 310 0.615734024785565 8 6 2 -6.73943374279655 LTS-039 chr15 68661671 68695248 33578 * ITGA11 NA 0 NA 0.822 1 NA NA NA NA NA LTS-039 chr15 68695249 69698142 1002894 * c(MIR548H4, MIR4312, CORO2B, ITGA11, SPESP1, GLCE, EWSAT1, PAQR5, NOX5, ANP32A-IT1, ANP32A) 0.264708622007116 16 0.0894493338898247 1.01337119086663 677 0.7288229286117 5 4 1 -6.75856432817598 LTS-039 chr15 69698143 72180483 2482341 * c(NR2E3, DRAIC, CT62, LINC00593, MYO9A, LRRC49, PAQR5, UACA, LARP6, THAP10, RPLP1, MIR629, TLE3, THSD4, KIF23) 0.346397756322133 24 0.127783947813646 1.38362843336137 1485 0.637640448406538 6 4 2 -6.77168317326201 LTS-039 chr15 72180484 72185250 4767 * MYO9A NA 0 NA 0.864 1 NA NA NA NA NA LTS-039 chr15 72185251 73575460 1390210 * c(ADPGK-AS1, SENP8, HIGD2B, GRAMD2, ARIH1, HEXA, TMEM202, MYO9A, NEO1, PKM, GOLGA6B, PARP6, BBS4, CELF6, MIR630, HEXA-AS1, ADPGK) 0.288076992147751 10 0.060870445300746 1.11291656865916 1183 0.563293256309758 4 3 1 -6.87393718233028 LTS-039 chr15 73575461 73580623 5163 * NEO1 NA 0 NA 0.838 1 NA NA NA NA NA LTS-039 chr15 73580624 74177450 596827 * c(HCN4, TBC1D21, NPTN, REC114, C15orf59, NEO1, CD276) 0.227638346427718 9 0.152593231974568 0.798941955401096 500 0.468871618199167 4 3 1 -6.87603576627595 LTS-039 chr15 74177451 74178324 874 * TBC1D21 NA 0 NA 1.165 1 NA NA NA NA NA LTS-039 chr15 74178325 74244481 66157 * c(LOXL1-AS1, TBC1D21, LOXL1) 0 1 NA 1.39470377692648 96 0.812914443219958 7 7 0 -5.76445448411856 LTS-039 chr15 74244482 74275541 31060 * character(0) NA 0 NA 4.134 1 NA NA NA NA NA LTS-039 chr15 74275542 74284131 8590 * STOML1 NA 0 NA 3.96813726945153 59 1.44972998473448 20 NA NA -5.76441597063114 LTS-039 chr15 74284132 74284412 281 * STOML1 NA 0 NA 2.465 1 NA NA NA NA NA LTS-039 chr15 74284413 74487943 203531 * c(LOC283731, GOLGA6A, ISLR, PML, ISLR2, STRA6, STOML1) NA 0 NA 1.80971034586961 398 0.807550661359319 9 NA NA -5.76442426997149 LTS-039 chr15 74487944 74536497 48554 * c(STRA6, CCDC33) 0.13639474243312 2 0.0226274169979695 3.34162790932973 77 14.4585615686101 17 15 2 -6.73524378450655 LTS-039 chr15 74536498 74554725 18228 * CCDC33 NA 0 NA 1.234 1 NA NA NA NA NA LTS-039 chr15 74554726 75498380 943655 * c(MIR4513, SCAMP2, ARID3B, CLK3, CSK, CYP1A1, CYP1A2, CYP11A1, SCAMP5, ULK3, MPI, UBL7-AS1, RPP25, C15orf39, FAM219B, CPLX3, PPCDC, LOC729739, LMAN1L, CCDC33, EDC3, SEMA7A, UBL7, COX5A) 0.223508261232836 27 0.0744903098920005 1.30634406860224 1428 0.939451136536945 6 5 1 -6.74862626899682 LTS-039 chr15 75498381 75657032 158652 * c(MAN2C1, COMMD4, C15orf39, GOLGA6C, GOLGA6D, MIR631, NEIL1) 0.327281748454308 6 0.0308182846159008 0.936476901163211 327 0.431046053709321 7 5 2 -6.98798543732229 LTS-039 chr15 75657033 75658007 975 * MAN2C1 NA 0 NA 2.281 1 NA NA NA NA NA LTS-039 chr15 75658008 75663947 5940 * c(SIN3A, MAN2C1) NA 0 NA 1.96755106644257 72 1.00922436856006 10 NA NA -5.76441017841567 LTS-039 chr15 75663948 75913418 249471 * c(SNUPN, SIN3A, PTPN9) 0.259620310264675 6 0.145347514598634 1.05327972089014 303 0.452872800623866 5 4 1 -6.7373779687313 LTS-039 chr15 75913419 75913430 12 * SNUPN 0.209 1 NA 2.296 1 NA NA NA NA NA LTS-039 chr15 75913431 75941111 27681 * c(SNUPN, IMP3) 0.297 1 NA 2.06212166826158 57 0.673957678943952 10 10 0 -5.76447903233062 LTS-039 chr15 75941112 78287458 2346347 * c(DNM1P35, MIR4313, TSPAN3, HMG20A, TMEM266, NRG4, CSPG4, ODF3L1, ETFA, TBC1D2B, LINGO1-AS1, SNX33, FBXO22, SCAPER, RCN2, LOC645752, ISL2, FBXO22-AS1, TYRO3P, PEAK1, LINC00597, LINGO1, PSTPIP1, LOC91450, UBE2Q2) 0.279275744635058 41 0.0885040098306148 1.0322018247668 1841 0.471090952607536 5 4 1 -6.81818092984084 LTS-039 chr15 78287459 78290595 3137 * TBC1D2B NA 0 NA 0.553933934034864 72 0.262477899807439 2 NA NA -5.76445990103492 LTS-039 chr15 78290596 78385039 94444 * c(MIR5003, TBC1D2B, SH2D7) NA 0 NA 1.37544823531575 98 0.692278930041028 7 NA NA -5.76460961403263 LTS-039 chr15 78385040 78486976 101937 * c(CIB2, ACSBG1, IDH3A, SH2D7) 0.30701312844251 6 0.0607993969268336 0.77937846731951 322 0.324891292612233 4 3 1 -6.75798530734424 LTS-039 chr15 78486977 78880753 393777 * c(CHRNA5, HYKK, CRABP1, ACSBG1, IREB2, DNAJA4, PSMA4, WDR61) 0.273418123794665 14 0.0913268493193179 1.23253975569353 569 0.629214664654632 8 6 2 -6.77663541538888 LTS-039 chr15 78880754 78882126 1373 * CHRNA5 NA 0 NA 0.916 1 NA NA NA NA NA LTS-039 chr15 78882127 79133042 250916 * c(ADAMTS7, CHRNA3, CHRNA5, CHRNB4, LOC646938) 0.311202192493816 18 0.0670518285538754 0.687761325327602 340 0.37123358489391 4 3 1 -6.83055377286092 LTS-039 chr15 79133043 79165115 32073 * character(0) NA 0 NA 3.778 1 NA NA NA NA NA LTS-039 chr15 79165116 79253434 88319 * c(MORF4L1, CTSH, RASGRF1) 0.288275637809901 2 0.0212132034355964 1.25262693177477 212 0.713769043854987 11 8 3 -6.77076103819282 LTS-039 chr15 79253435 80137849 884415 * c(ST20-MTHFS, MTHFS, KIAA1024, TMED3, ANKRD34C, MIR184, RASGRF1, ANKRD34C-AS1) 0.339321956594063 7 0.0570020885164578 0.795785171609486 456 0.292197301755295 3 2 1 -6.99167478368369 LTS-039 chr15 80137850 80181400 43551 * c(ST20-MTHFS, MTHFS) NA 0 NA 1.308 1 NA NA NA NA NA LTS-039 chr15 80181401 80217213 35813 * c(ST20-MTHFS, MTHFS, ST20-AS1, ST20) 0.263862058825062 5 0.0311175191813229 1.49689413424877 70 1.27936718441055 16 12 4 -6.73971987660972 LTS-039 chr15 80217214 80253195 35982 * character(0) NA 0 NA 0.689 1 NA NA NA NA NA LTS-039 chr15 80253196 85166956 4913761 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4514, MIR4515, C15orf40, WHAMM, FSD2, CFAP161, FAH, MESDC2, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, HDGFRP3, BTBD1, TM6SF1, ZFAND6, ZSCAN2, ADAMTSL3, CEMIP, ABHD17C, MESDC1, BCL2A1, LOC642423, GOLGA6L4, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, MIR549A, EFL1, STARD5, NA NA NA NA NA NA NA NA NA LTS-039 AP3B2, FAM103A1, MEX3B, HOMER2, ARNT2) 0.276682643454248 65 0.0963584628633345 0.956664068720621 3131 0.469160510553154 4 3 1 -6.82654301254807 LTS-039 NA NA NA NA LTS-039 chr15 85166957 85175092 8136 * c(SCAND2P, LOC642423) NA 0 NA 2.46 1 NA NA NA NA NA LTS-039 chr15 85175093 85259898 84806 * c(SEC11A, NMB, SCAND2P, LOC642423, WDR73) NA 0 NA 1.3839800471065 171 0.550603307224343 7 NA NA -5.76461445471746 LTS-039 chr15 85259899 85325807 65909 * c(LOC642423, ZNF592) NA 0 NA 0.516 1 NA NA NA NA NA LTS-039 chr15 85325808 85346710 20903 * c(LOC642423, ZNF592) NA 0 NA 0.717914135669975 118 0.208250773732654 3 NA NA -5.76443526544265 LTS-039 chr15 85346711 86368970 1022260 * c(MIR1276, AKAP13, PDE8A, ALPK3, LOC642423, KLHL25, SLC28A1, ZNF592) 0.266002715262033 31 0.0905214285805193 1.06949065081675 1049 0.57621986887469 5 4 1 -6.75780160093125 LTS-039 chr15 86368971 86685115 316145 * character(0) NA 0 NA 0.771 1 NA NA NA NA NA LTS-039 chr15 86685116 88576224 1891109 * c(AGBL1, LINC00052, NTRK3, AGBL1-AS1) 0.277258073092955 8 0.12781990678853 0.748950532221527 571 0.347573951187256 4 3 1 -7.02124122210186 LTS-039 chr15 88576225 88669438 93214 * NTRK3 NA 0 NA 1.065 1 NA NA NA NA NA LTS-039 chr15 88669439 89199652 530214 * c(MIR1179, MIR3529, MRPL46, NTRK3-AS1, ISG20, MIR7-2, NTRK3, DET1, AEN, MRPS11) 0.398634730718318 11 0.0657781395021449 0.960227406129157 318 0.409102619748287 5 3 2 -6.76590831530113 LTS-039 chr15 89199653 89379350 179698 * ACAN NA 0 NA 0.34 1 NA NA NA NA NA LTS-039 chr15 89379351 89411595 32245 * ACAN 0.117 1 NA 0.589773584842286 168 0.179354162475747 2 2 0 -5.77108151413323 LTS-039 chr15 89411596 89414530 2935 * ACAN NA 0 NA 0.774 1 NA NA NA NA NA LTS-039 chr15 89414531 90193215 778685 * c(ABHD2, HAPLN3, ACAN, MIR9-3HG, LINC00928, KIF7, MIR9-3, MFGE8, RHCG, POLG, FANCI, RLBP1, TICRR) 0.304209984272509 4 0.0390928382187837 0.965144638633934 1037 0.34576909399318 4 3 1 -6.77470604950988 LTS-039 chr15 90193216 90195753 2538 * KIF7 NA 0 NA 1.309 1 NA NA NA NA NA LTS-039 chr15 90195754 91769376 1573623 * c(PRC1-AS1, C15orf38-AP3S2, MIR5094, AP3S2, SEMA4B, CIB1, MESP2, FES, GABARAPL3, VPS33B, ANPEP, IDH2, ZNF774, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, MAN2A2, TTLL13P, FURIN, NGRN, PLIN1, MESP1, UNC45A, WDR93, BLM, CRTC3, PEX11A, IQGAP1, PRC1, RCCD1, SV2B) 0.337503324989774 84 0.0739994146446899 1.262009716013 2755 0.553804145703628 6 4 2 -6.76611222628874 LTS-039 chr15 91769377 91769515 139 * SV2B NA 0 NA 0.692 1 NA NA NA NA NA LTS-039 chr15 91769516 92397586 628071 * c(SLCO3A1, SV2B) NA 0 NA 0.807445271120779 258 0.275568809543408 4 NA NA -5.81292521629129 LTS-039 chr15 92397587 92709186 311600 * SLCO3A1 NA 0 NA 1.32798632517557 139 0.544476174365867 6 NA NA -5.76656018858111 LTS-039 chr15 92709187 92714901 5715 * SLCO3A1 NA 0 NA 0.468 1 NA NA NA NA NA LTS-039 chr15 92714902 93160861 445960 * c(LINC00930, C15orf32, SLCO3A1, FAM174B, ST8SIA2) 0.300891735068079 5 0.0757152560584721 0.733434907273815 199 0.322003249101397 4 3 1 -6.83115152065878 LTS-039 chr15 93160862 93489479 328618 * c(MIR3175, LINC01578, CHD2, FAM174B, ASB9P1) 0.340942290252849 3 0.0931826164045634 1.5260275765453 168 0.888467503440184 9 6 3 -6.74330876867958 LTS-039 chr15 93489480 93492092 2613 * CHD2 NA 0 NA 1.116 1 NA NA NA NA NA LTS-039 chr15 93492093 95001579 1509487 * c(CHD2, MCTP2, RGMA) 0.298907730998799 28 0.0747069406690368 1.01683682687261 613 0.475564272510437 4 3 1 -6.80148094412501 LTS-039 chr15 95001580 95013501 11922 * MCTP2 NA 0 NA 2.242 1 NA NA NA NA NA LTS-039 chr15 95013502 96883500 1869999 * c(MIR1469, LINC00924, LINC01197, LOC440311, MCTP2, NR2F2-AS1, NR2F2) 0.146 1 NA 2.07387670613765 183 1.00920186050369 11 11 0 -5.7660312544267 LTS-039 chr15 96883501 97326611 443111 * SPATA8-AS1 NA 0 NA 0.931 1 NA NA NA NA NA LTS-039 chr15 97326612 98421390 1094779 * c(SPATA8, LINC00923) 0.39 1 NA 0.616674655789814 135 0.274069058370731 3 3 0 -5.93736848691806 LTS-039 chr15 98421391 101716452 3295062 * c(MIR4714, LRRC28, ASB7, LYSMD4, PGPEP1L, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, FAM169B, IGF1R, SPATA41, MEF2A, PRKXP1, LINS1, TTC23, HSP90B2P, LRRK1, ARRDC4) 0.28562720143194 64 0.081519046306457 1.08377309525279 2201 0.465201051918816 5 4 1 -6.86204546524531 LTS-039 chr15 101716453 101716551 99 * CHSY1 NA 0 NA 1.117 1 NA NA NA NA NA LTS-039 chr15 101716552 102277592 561041 * c(LOC100507472, TARSL2, CHSY1, PCSK6, SELENOS, SNRPA1, TM2D3) 0.288269869705225 19 0.0496224340889509 1.38354232992505 582 0.821563398419967 8 6 2 -6.77934711275918 LTS-039 chr15 102277593 102279495 1903 * character(0) NA 0 NA 0.484 1 NA NA NA NA NA LTS-039 chr15 102279496 102516492 236997 * c(FAM138E, OR4F4, WASH3P, OR4F6, OR4F15, OR4F13P) 0.35054327625137 3 0.0500632932729493 0.730845363235505 129 0.381706822829985 3 2 1 -6.8335528349013 LTS-039 chr15 102516493 102516544 52 * WASH3P NA 0 NA 3.841 1 NA NA NA NA NA LTS-039 chr16 81704 81779 76 * character(0) 0.29 1 NA 0.616 1 NA NA NA NA NA LTS-039 chr16 81780 103502 21723 * POLR3K 0.46072838879085 4 0.0132003787824441 1.00348908084506 42 0.705764228167412 4 2 2 -8.8653588627092 LTS-039 chr16 103503 426522 323020 * c(MRPL28, HBA1, HBA2, HBM, HBQ1, HBZ, ARHGDIG, MPG, POLR3K, LUC7L, TMEM8A, RHBDF1, PDIA2, SNRNP25, NPRL3, AXIN1, FAM234A, RGS11) 0.454555760958614 12 0.0546916286320333 0.568640175762334 936 0.230159278565428 2 1 1 -6.86242925710819 LTS-039 chr16 426523 455033 28511 * c(LOC100134368, DECR2, NME4, TMEM8A) NA 0 NA 1.05149118755758 75 0.460216470021749 5 NA NA -5.76444081711129 LTS-039 chr16 455034 455469 436 * DECR2 NA 0 NA 0.652 1 NA NA NA NA NA LTS-039 chr16 455470 720638 265169 * c(MIR3176, MIR5587, WFIKKN1, PRR35, WDR90, DECR2, NHLRC4, RAB40C, LINC00235, CAPN15, METTL26, MCRIP2, RHOT2, PIGQ, RAB11FIP3) 0.4612069152447 32 0.0367421129346589 0.576508120881153 1008 0.259316651805083 2 1 1 -7.13676689722958 LTS-039 chr16 720639 747450 26812 * c(STUB1, FBXL16, JMJD8, WDR24, RHOT2, RHBDL1) 0.465714007999372 4 0.0129196233175224 0.837103331300623 374 0.256554972807668 4 2 2 -9.44595891476735 LTS-039 chr16 747451 848294 100844 * c(MSLN, RPUSD1, CCDC78, FBXL16, GNG13, CHTF18, NARFL, FAM173A, MIR662, METRN, HAGHL) 0.430449440156267 20 0.104728772500558 0.571171555761106 629 0.239519925063543 2 1 1 -6.73869911991082 LTS-039 chr16 848295 848468 174 * GNG13 NA 0 NA 0.322 1 NA NA NA NA NA LTS-039 chr16 848469 1323767 475299 * c(SSTR5-AS1, TPSD1, TPSG1, SOX8, PRR25, C1QTNF8, GNG13, TPSB2, LMF1, SSTR5, TPSAB1, CACNA1H) 0.403154308285189 21 0.0604444648692776 0.3240532681775 713 0.224194201485741 2 1 1 -7.99141853928292 LTS-039 chr16 1323768 1326602 2835 * character(0) NA 0 NA 0.446 1 NA NA NA NA NA LTS-039 chr16 1326603 1724908 398306 * c(TSR3, CLCN7, C16orf91, PTX4, CRAMP1, CCDC154, UNKL, UBE2I, TMEM204, GNPTG, BAIAP3, IFT140, TELO2) 0.437470935985141 74 0.0464301476190093 0.536761089220547 1394 0.264645177818677 2 1 1 -6.74621031360115 LTS-039 chr16 1724909 1785072 60164 * c(MIR3177, MAPK8IP3, CRAMP1, HN1L) 0.478381157988961 5 0.00966953980290688 0.885844473263457 198 0.384865993494849 4 2 2 -12.039627348073 LTS-039 chr16 1785073 1793270 8198 * MAPK8IP3 NA 0 NA 0.374 1 NA NA NA NA NA LTS-039 chr16 1793271 1819792 26522 * MAPK8IP3 0.441349766512439 6 0.0408839821935192 0.542803060044576 168 0.163463465004317 2 1 1 -6.77380706331445 LTS-039 chr16 1819793 2050346 230554 * c(NUBP2, TBL3, NOXO1, RNF151, EME2, MAPK8IP3, MEIOB, GFER, SNORA64, HAGH, IGFALS, NDUFB10, NME3, MSRB1, SNORA10, RPL3L, RPS2, HS3ST6, LINC00254, MRPS34, SNORA78, SNHG9, FAHD1, ZNF598, SPSB3, SYNGR3) 0.455180935847579 25 0.0347688557955727 0.816546673415893 927 0.454943496776893 4 2 2 -7.02194656661211 LTS-039 chr16 2050347 2070200 19854 * c(NPW, ZNF598) 0.375 1 NA 0.790390679616427 51 0.497883372436778 3 3 0 -5.76494492723163 LTS-039 chr16 2070201 2113116 42916 * c(NPW, NTHL1, TSC2, SLC9A3R2) 0.443036421739844 5 0.0303347984994132 0.857223741841409 170 0.308942673027768 4 2 2 -6.83115816895053 LTS-039 chr16 2113117 2114198 1082 * TSC2 NA 0 NA 0.581 1 NA NA NA NA NA LTS-039 chr16 2114199 2563853 449655 * c(MIR940, MIR1225, MIR3677, MIR3180-5, MIR4717, MIR4516, RNPS1, ECI1, DNASE1L2, E4F1, ABCA3, RAB26, SNORD60, BRICD5, PGP, NTN3, ATP6V0C, PKD1, TBC1D24, CASKIN1, MLST8, ABCA17P, TSC2, C16orf59, TRAF7, CCNF) 0.428068931504628 23 0.1387979166273 0.661421264460682 1382 0.300400369870725 3 2 1 -6.84806502765653 LTS-039 chr16 2563854 2563856 3 * c(ATP6V0C, TBC1D24) NA 0 NA 1.144 1 NA NA NA NA NA LTS-039 chr16 2563857 2607418 43562 * c(MIR3178, AMDHD2, PDPK1, ATP6V0C, TBC1D24, CEMP1) NA 0 NA 0.902342406028242 134 0.377710878582215 4 NA NA -5.76443582618612 LTS-039 chr16 2607419 2790628 183210 * c(SRRM2-AS1, ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276, PRSS27) 0.374809113949715 3 0.102001633973841 0.497454714380456 370 0.27404999302004 2 1 1 -6.91408923054345 LTS-039 chr16 2790629 2806401 15773 * c(SRRM2-AS1, SRRM2) NA 0 NA 1.152 1 NA NA NA NA NA LTS-039 chr16 2806402 3014989 208588 * c(PRSS21, FLYWCH2, ZG16B, PRSS30P, SRRM2, PRSS33, PRSS41, PRSS22, TCEB2, KREMEN2, FLYWCH1) 0.432103050283051 10 0.0589957625596958 0.690419195274374 555 0.28958305994372 4 2 2 -6.8295098040484 LTS-039 chr16 3014990 3016121 1132 * KREMEN2 NA 0 NA 1.883 1 NA NA NA NA NA LTS-039 chr16 3016122 3349596 333475 * c(LOC100128770, ZNF263, PAQR4, BICDL2, OR1F2P, LINC00514, LINC00921, MEFV, OR1F1, TNFRSF12A, HCFC1R1, MMP25, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, ZNF205-AS1, ZSCAN10, CLDN6, CLDN9, PKMYT1, TIGD7, IL32) 0.348372381409483 43 0.0520125847281181 1.08940953376457 1074 0.518944701871982 6 4 2 -6.75686409632357 LTS-039 chr16 3349597 3349600 4 * TIGD7 NA 0 NA 0.69 1 NA NA NA NA NA LTS-039 chr16 3349601 5134595 1784995 * c(MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, C16orf89, C16orf71, DNASE1, EEF2KMT, NLRC3, CLUAP1, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, OR2C1, PAM16, NAGPA, ZSCAN32, PPL, ALG1, NMRAL1, SRL, C16orf90, TFAP4, ZNF75A, ZNF174, CORO7, ROGDI, NAA60, NUDT16L1, SLX4, GLYR1, GLIS2, DNAJA3, TIGD7, SEC14L5) 0.429178423789553 85 0.0930507481791236 0.634735158890287 3323 0.288700441425758 2 1 1 -7.1183918967649 LTS-039 chr16 5134596 5134981 386 * c(EEF2KMT, ALG1) NA 0 NA 0.304 1 NA NA NA NA NA LTS-039 chr16 5134982 8878435 3743454 * c(ABAT, EEF2KMT, TMEM114, RBFOX1, ALG1, METTL22) 0.468927535101696 7 0.0287907061723877 0.451632739404151 445 0.234161639618821 2 1 1 -8.55313590685025 LTS-039 chr16 8878436 9215438 337003 * c(CARHSP1, TMEM186, C16orf72, PMM2, USP7) 0.435595129183503 16 0.0448768221542777 0.683571380385534 477 0.296295236163534 2 1 1 -6.88406427901642 LTS-039 chr16 9761122 10577485 816364 * c(GRIN2A, ATF7IP2) 0.336859692935468 5 0.19920918653516 0.437226450597684 432 0.259448549216684 2 1 1 -7.12512156878499 LTS-039 chr16 10577486 10622292 44807 * c(EMP2, ATF7IP2) NA 0 NA 0.842 1 NA NA NA NA NA LTS-039 chr16 10622293 11275512 653220 * c(TEKT5, EMP2, CLEC16A, DEXI, CIITA, NUBP1, TVP23A) 0.432501471415619 19 0.0487151284786365 0.666890857697654 640 0.29034854599125 2 1 1 -6.96681977802328 LTS-039 chr16 11275513 11275612 100 * CLEC16A NA 0 NA 0.75 1 NA NA NA NA NA LTS-039 chr16 11275613 12293550 1017938 * c(RMI2, CLEC16A, RSL1D1, ZC3H7A, GSPT1, BCAR4, TXNDC11, PRM1, PRM2, PRM3, TNFRSF17, TNP2, SNN, SOCS1, SNX29, LITAF) 0.378740449989203 22 0.0527454887178665 0.919008074775446 861 0.409764365765175 3 2 1 -6.9753382768055 LTS-039 chr16 12293551 12296856 3306 * SNX29 NA 0 NA 0.356 1 NA NA NA NA NA LTS-039 chr16 12296857 13329637 1032781 * c(MIR4718, CPPED1, SHISA9, SNX29) 0.429854188795094 11 0.0718442760420063 0.473999972060953 263 0.211023855109293 2 1 1 -6.90618271953297 LTS-039 chr16 14013942 18793336 4779395 * c(MIR365A, NPIPA5, MIR3179-2, MIR3180-4, NTAN1, FOPNL, ERCC4, PDXDC1, NOMO1, MPV17L, NOMO2, PKD1P1, ABCC6, NOMO3, ABCC1, MYH11, PARN, BFAR, RRN3, NDE1, MIR193B, MKL2, MIR484, XYLT1, NPIPA3, ABCC6P1, ABCC6P2, PLA2G10, C16orf45, NPIPA1, KIAA0430) 0.412725173414217 58 0.0877318413294803 0.633984322407891 2120 0.302398808639512 3 2 1 -7.25341927886189 LTS-039 chr16 18793337 18793646 310 * character(0) NA 0 NA 1.301 1 NA NA NA NA NA LTS-039 chr16 18793647 19278327 484681 * c(COQ7, ITPRIPL2, SMG1, ARL6IP1, SYT17, RPS15A, TMC7) 0.343233399795133 18 0.108040236997415 1.02790104013437 688 0.444898868694993 6 4 2 -6.79690440091988 LTS-039 chr16 19278328 19883779 605452 * c(IQCK, KNOP1, GDE1, GPRC5B, SYT17, C16orf62, CLEC19A, TMC5, CCP110) 0.419972895299611 18 0.116056344778727 0.734765132201913 813 0.384355353432599 4 2 2 -6.82892664160638 LTS-039 chr16 19883780 20651917 768138 * c(ACSM1, ACSM2A, GPR139, PDILT, GP2, ACSM2B, GPRC5B, ACSM5, UMOD) 0.427704174507289 13 0.0491680790757581 0.418783385603449 587 0.184027978135003 2 1 1 -7.41619665957107 LTS-039 chr16 20651918 20673016 21099 * ACSM1 NA 0 NA 0.708 1 NA NA NA NA NA LTS-039 chr16 20673017 20955909 282893 * c(ERI2, ACSM1, DCUN1D3, DNAH3, THUMPD1, LYRM1, ACSM3, LOC81691) 0.403952072481974 7 0.0495032466467749 0.615119647472216 476 0.28958586516584 2 1 1 -6.94690281045227 LTS-039 chr16 20955910 21830024 874115 * c(LOC100190986, SMG1P3, SNX29P1, IGSF6, CRYM, OTOA, NPIPB3, ANKS4B, SLC7A5P2, CRYM-AS1, METTL9, DNAH3, TMEM159, RRN3P1, ZP2) 0.326574147466151 23 0.190832128284969 0.508931686355588 938 0.317299142579699 2 1 1 -6.91572520267427 LTS-039 chr16 21830025 21963999 133975 * RRN3P1 NA 0 NA 1.703 1 NA NA NA NA NA LTS-039 chr16 21964000 21985398 21399 * UQCRC2 NA 0 NA 0.901272862482634 73 0.339455456355197 4 NA NA -5.7644227866566 LTS-039 chr16 21985399 21987388 1990 * UQCRC2 NA 0 NA 0.339 1 NA NA NA NA NA LTS-039 chr16 21987389 23117706 1130318 * c(RRN3P3, NPIPB5, MIR548AA2, CDR2, VWA3A, PDZD9, EEF2K, POLR3E, USP31, SMG1P1, LOC653786, MIR548D2, C16orf52, UQCRC2, HS3ST2) 0.387717581464761 22 0.105666919305419 0.515744284019577 987 0.279689620654173 2 1 1 -6.83783281966949 LTS-039 chr16 23117707 23197545 79839 * c(USP31, SCNN1G) 0.475 1 NA 0.776729885808257 23 0.225254296349072 3 3 0 -5.77172306343342 LTS-039 chr16 23197546 23399932 202387 * c(SCNN1B, SCNN1G, COG7) 0.456073832741786 6 0.0283225469664483 0.413906828226862 189 0.154291304163855 2 1 1 -7.47984597144361 LTS-039 chr16 23399933 23400068 136 * COG7 NA 0 NA 1.057 1 NA NA NA NA NA LTS-039 chr16 23400069 23701077 301009 * c(EARS2, GGA2, NDUFAB1, PLK1, UBFD1, PALB2, DCTN5, COG7) 0.386757918833627 3 0.0409186184191663 0.609950051927527 792 0.229332656452104 3 2 1 -6.89926787757484 LTS-039 chr16 23701078 23701220 143 * PLK1 NA 0 NA 0.426 1 NA NA NA NA NA LTS-039 chr16 23701221 24373645 672425 * c(CACNG3, ERN2, PLK1, PRKCB, CHP2) 0.441795880168542 9 0.0313878072576669 0.427412061401505 475 0.15042942011949 2 1 1 -7.54503176236156 LTS-039 chr16 24373646 24874094 500449 * c(CACNG3, SLC5A11, TNRC6A, RBBP6) 0.436801845168978 6 0.0401468139043021 0.631563909633436 451 0.312257595712763 2 1 1 -6.83853343999042 LTS-039 chr16 24874095 24881230 7136 * SLC5A11 NA 0 NA 0.445 1 NA NA NA NA NA LTS-039 chr16 24881231 28112878 3231648 * c(LCMT1-AS2, SLC5A11, GSG1L, C16orf82, NSMCE1, XPO6, KIAA0556, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, FLJ21408, IL21R, LCMT1, ARHGAP17, LOC554206, KDM8, HS3ST4) 0.426496550042106 15 0.049596466848048 0.465128608356617 1275 0.189573349856557 2 1 1 -7.5555767004448 LTS-039 chr16 28112879 29755762 1642884 * c(ATP2A1-AS1, SLX1B-SULT1A4, MIR4721, MIR4517, ATXN2L, SGF29, CLN3, XPO6, QPRT, IL27, SH2B1, NUPR1, LAT, C16orf54, SBK1, SNX29P2, SMG1P2, ATP2A1, SLX1A, BOLA2, APOBR, LOC606724, LOC613038, RRN3P2, SPN, SULT1A2, SULT1A1, SULT1A3, TUFM, RABEP2, SLC7A5P1, SPNS1, NFATC2IP, CD19) 0.430133416808299 60 0.0596695490576706 0.595648682811324 1751 0.335258150148881 2 1 1 -6.8474496424877 LTS-039 chr16 29755763 29755765 3 * c(SLX1B-SULT1A4, C16orf54, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038) NA 0 NA 0.822 1 NA NA NA NA NA LTS-039 chr16 29755766 29831679 75914 * c(SLX1B-SULT1A4, PRRT2, C16orf54, KIF22, MAZ, SMG1P2, SLX1A, BOLA2, LOC606724, LOC613038, ZG16, PAGR1) NA 0 NA 1.11015573346106 260 0.532777033689486 5 NA NA -5.76460445581558 LTS-039 chr16 29831680 30206138 374459 * c(SLX1B-SULT1A4, CDIPT, CORO1A, TMEM219, C16orf92, ALDOA, KCTD13, ASPHD1, SEZ6L2, INO80E, SMG1P2, CDIPT-AS1, SLX1A, BOLA2, PPP4C, MAPK3, LOC606724, LOC613038, TBX6, GDPD3, PAGR1, YPEL3, FAM57B, DOC2A, HIRIP3, TAOK2, MVP) 0.47819451073824 7 0.0193513873010746 0.627100858523579 1161 0.273500721888668 2 1 1 -9.18759910255155 LTS-039 chr16 30206139 30217589 11451 * c(SLX1B-SULT1A4, SMG1P2, SULT1A4, SLX1A, LOC613038) NA 0 NA 0.296765536411475 39 0.31060941361662 1 NA NA -5.76636933966548 LTS-039 chr16 30217590 30347601 130012 * c(SMG1P2, SMG1P5, LOC613037, LOC613038) NA 0 NA 1.354 1 NA NA NA NA NA LTS-039 chr16 30347602 30441455 93854 * c(CD2BP2, SEPT1, ZNF48, TBC1D10B, MYLPF, ZNF771, DCTPP1) 0.463387464247903 2 0.00848528137423854 0.852430082494405 373 0.293582065110292 4 2 2 -10.8698570355706 LTS-039 chr16 30441456 30454960 13505 * SEPHS2 NA 0 NA 1.56 1 NA NA NA NA NA LTS-039 chr16 30454961 30457261 2301 * SEPHS2 NA 0 NA 1.6268151884657 49 0.361237570696894 8 NA NA -5.7644108394869 LTS-039 chr16 30457262 30484143 26882 * ITGAL NA 0 NA 0.768 1 NA NA NA NA NA LTS-039 chr16 30484144 30531290 47147 * c(MIR4518, ITGAL) 0.457283388423839 5 0.0231235810375469 0.490952235335781 148 0.155256822148596 2 1 1 -7.44403401138818 LTS-039 chr16 30531291 30532737 1447 * ITGAL NA 0 NA 0.73 1 NA NA NA NA NA LTS-039 chr16 30532738 30675709 142972 * c(ZNF689, ZNF785, ZNF688, ITGAL, FBRS, ZNF747, PRR14, ZNF768, ZNF764) 0.426476542418041 3 0.0300222139978606 1.01002554909957 476 0.417978077862512 4 2 2 -6.75246127898585 LTS-039 chr16 30675710 30676031 322 * FBRS NA 0 NA 0.637 1 NA NA NA NA NA LTS-039 chr16 30676032 30904421 228390 * c(MIR4519, TMEM265, SRCAP, ZNF629, PHKG2, FBRS, SNORA30, LOC730183, CCDC189, BCL7C, RNF40) 0.453369113059429 6 0.049434468406838 0.636555685457256 788 0.292051782808926 2 1 1 -6.90926318299311 LTS-039 chr16 30904422 30972814 68393 * c(MIR762, CTF1, FBXL19-AS1, FBXL19, BCL7C, ORAI3, SETD1A) 0.468762665342557 3 0.0304466746952767 0.842523768536021 220 0.31558338658678 4 2 2 -7.55052069313513 LTS-039 chr16 30972815 30974692 1878 * SETD1A NA 0 NA 0.522 1 NA NA NA NA NA LTS-039 chr16 30974693 31104675 129983 * c(STX1B, PRSS53, STX4, VKORC1, ZNF668, HSD3B7, ZNF646, SETD1A) 0.436583928980717 23 0.0544362048204769 0.530712184866786 657 0.224972792941603 2 1 1 -6.74004418172599 LTS-039 chr16 31104676 31226218 121543 * c(PYCARD-AS1, BCKDK, PRSS36, FUS, PYCARD, PRSS53, TRIM72, PRSS8, VKORC1, KAT8) 0.436486787894051 9 0.0319061122670876 0.934644142951911 408 0.3564876982718 4 2 2 -6.75400634438665 LTS-039 chr16 31226219 31227986 1768 * c(PYDC1, TRIM72) NA 0 NA 0.339 1 NA NA NA NA NA LTS-039 chr16 31227987 31374535 146549 * c(PYDC1, ITGAM, ITGAX, TRIM72) 0.464947213483266 4 0.0328772971314046 0.445906953399172 238 0.171528371002136 2 1 1 -7.41179227564546 LTS-039 chr16 31374536 31434966 60431 * c(ITGAD, ITGAX) NA 0 NA 0.403107059516731 221 0.179902623118782 1 NA NA -5.78639986912927 LTS-039 chr16 31434967 31435174 208 * ITGAD NA 0 NA 0.59 1 NA NA NA NA NA LTS-039 chr16 31435175 31446084 10910 * c(COX6A2, ITGAD) 0 1 NA 0.68454044127282 32 0.371679747467385 3 3 0 -5.76447956303535 LTS-039 chr16 31446085 31574966 128882 * c(ZNF843, AHSP, C16orf58, SLC5A2, TGFB1I1, ARMC5) NA 0 NA 0.590216183417925 348 0.224538305774785 2 NA NA -5.78163653309123 LTS-039 chr16 31574967 31575244 278 * character(0) NA 0 NA 0.368 1 NA NA NA NA NA LTS-039 chr16 31575245 33816335 2241091 * c(CLUHP3, ZNF267, ZNF720, SLC6A10P, LOC390705, YBX3P1, NA, TP53TG3D) 0.362002825114448 6 0.100284927415174 0.388312428016705 450 0.244551921655807 1 1 0 -7.71258588236462 LTS-039 chr16 33816336 33961104 144769 * LINC00273 NA 0 NA 1.119 1 NA NA NA NA NA LTS-039 chr16 33961105 34257013 295909 * LINC00273 0.318473853202775 76 0.104274565871641 0.671012866826014 132 0.290539805957306 3 2 1 -6.8893948041525 LTS-039 chr16 34257014 34682380 425367 * c(LINC01566, UBE2MP1) NA 0 NA 0.504826638369167 109 0.2610844490476 2 NA NA -5.77380936992266 LTS-039 chr16 46508169 46602819 94651 * ANKRD26P1 0.445 1 NA 0.499183226693263 95 0.292281810352499 2 2 0 -5.7669139941817 LTS-039 chr16 46602820 46658024 55205 * c(ANKRD26P1, SHCBP1) NA 0 NA 0.501695476228375 114 0.265085766045117 2 NA NA -5.76590725381858 LTS-039 chr16 46658025 46660766 2742 * character(0) 0.395 1 NA 0.320503370981817 51 0.196404007386935 1 1 0 -5.7647474419702 LTS-039 chr16 46660767 48117353 1456587 * c(DNAJA2, ORC6, C16orf87, PHKB, VPS35, ITFG1, NETO2, GPT2, MYLK3, ABCC12) 0.462399923539237 5 0.0158335087709579 0.589499071934435 919 0.264322594931421 2 1 1 -8.63423288968739 LTS-039 chr16 48117354 48265946 148593 * c(ABCC11, ABCC12) 0.391 1 NA 0.453372411185055 294 0.156284220825971 2 2 0 -5.85377929534071 LTS-039 chr16 48265947 48278202 12256 * c(MIR548AE2, ABCC11) NA 0 NA 0.731 1 NA NA NA NA NA LTS-039 chr16 48278203 54280844 6002642 * c(LINC00919, LOC100507577, MIR548AE2, ADCY7, C16orf78, SNX20, CYLD, ZNF423, RPGRIP1L, CNEP1R1, TOX3, BRD7, C16orf97, HEATR3, RBL2, SALL1, NOD2, PAPD5, CASC16, LOC643802, AKTIP, SIAH1, FTO, CHD9, LONP2, ABCC11, NKD1, CBLN1, N4BP1) 0.414767682777356 60 0.10630807352772 0.650455162678622 2670 0.315579611114051 3 2 1 -7.10813369080771 LTS-039 chr16 54280845 55620534 1339690 * c(IRX5, MMP2, LPCAT2, CRNDE, IRX6, IRX3, CAPNS2) 0.412902430444628 14 0.124182978253511 0.997700854299652 503 0.586643989277729 5 3 2 -6.74643779998872 LTS-039 chr16 55620535 55690291 69757 * c(LPCAT2, SLC6A2) NA 0 NA 0.638 1 NA NA NA NA NA LTS-039 chr16 55690292 56868700 1178409 * c(MIR3935, CES1, NUDT21, CES5A, DKFZP434H168, AMFR, GNAO1, LOC283856, MT1DP, CES1P2, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, CES1P1, OGFOD1, BBS2, MT1IP, SLC6A2, MT4, NUP93) 0.432545246047219 35 0.0910443792421951 0.686085033623994 1075 0.311279764337385 3 2 1 -7.00377056221528 LTS-039 chr16 56868701 56906727 38027 * c(MIR138-2, SLC12A3, NUP93) NA 0 NA 0.671910460345064 85 0.296034135267704 3 NA NA -5.76525298789138 LTS-039 chr16 56906728 56911960 5233 * SLC12A3 NA 0 NA 1.223 1 NA NA NA NA NA LTS-039 chr16 56911961 56936272 24312 * SLC12A3 0.212 1 NA 1.24837857388932 67 0.379557818381266 6 6 0 -5.76441131814098 LTS-039 chr16 56936273 56936342 70 * SLC12A3 NA 0 NA 2.455 1 NA NA NA NA NA LTS-039 chr16 56936343 56995378 59036 * c(SLC12A3, HERPUD1) 0.229330944126417 8 0.0363767488533934 2.45858680903848 117 0.994757738125058 14 11 3 -6.73744362179093 LTS-039 chr16 56995379 56995752 374 * character(0) NA 0 NA 0.83 1 NA NA NA NA NA LTS-039 chr16 56995753 57563352 567600 * c(CETP, CPNE2, ARL2BP, PLLP, POLR2C, DOK4, COQ9, CIAPIN1, CCL17, CCL22, CX3CL1, FAM192A, NLRC5, RSPRY1, CCDC102A) 0.223079823641704 18 0.0355221094733675 1.28299651792025 1205 0.573869960821844 6 5 1 -6.79218638030174 LTS-039 chr16 57563353 57595883 32531 * c(ADGRG5, CCDC102A) NA 0 NA 0.643 1 NA NA NA NA NA LTS-039 chr16 57595884 57805505 209622 * c(KATNB1, ADGRG5, ADGRG3, KIFC3, DRC7, ADGRG1) 0.298534213975581 6 0.0484341477334604 0.87865893455142 570 0.323308409219462 4 3 1 -6.73353409897098 LTS-039 chr16 57805506 57805604 99 * KIFC3 NA 0 NA 1.163 1 NA NA NA NA NA LTS-039 chr16 57805605 58553792 748188 * c(CNGB1, CSNK2A2, PRSS54, CCDC113, CFAP20, TEPP, KIFC3, LOC388282, MMP15, ZNF319, GINS3, NDRG4, USB1, SETD6) 0.269823849835952 24 0.0948581607041477 1.17017578576164 1014 0.571167551262121 5 4 1 -6.7763603319063 LTS-039 chr16 58553793 58633421 79629 * c(CNOT1, SNORA46, SNORA50A, SETD6) NA 0 NA 0.986194266217378 277 0.332627956708157 5 NA NA -5.76742673080968 LTS-039 chr16 58633422 58699023 65602 * CNOT1 NA 0 NA 0.327 1 NA NA NA NA NA LTS-039 chr16 58699024 61686399 2987376 * c(CDH8, GOT2, SLC38A7, APOOP5) 0.375 1 NA 0.577649757334737 205 0.282387779245224 2 2 0 -5.92115515992951 LTS-039 chr16 61686400 66527306 4840907 * c(CDH5, LINC00920, CDH8, CDH11, BEAN1, LINC00922, TK2) 0.417970619150257 17 0.0507179339438173 0.639834224796045 458 0.309893186607837 3 2 1 -7.52638985807806 LTS-039 chr16 66527307 66543252 15946 * c(BEAN1, TK2) NA 0 NA 2.013 1 NA NA NA NA NA LTS-039 chr16 66543253 67189504 646252 * c(CKLF-CMTM1, CDH16, CMTM1, CMTM3, CMTM4, CMTM2, DYNC1LI2, CES3, TERB1, CES4A, CKLF, FAM96B, PDP2, RRAD, TK2, CA7, C16orf70, B3GNT9, CBFB, TRADD, CES2, NAE1) 0.314250802593821 7 0.043972935399164 1.00607346960202 1439 0.405109265229046 4 3 1 -6.85244694402825 LTS-039 chr16 67189505 67234524 45020 * c(E2F4, EXOC3L1, HSF4, FBXL8, KIAA0895L, ELMO3, TRADD, NOL3) 0.222237315014313 4 0.0665181679443043 1.39212763253159 362 0.515224101728474 10 8 2 -6.74721906843128 LTS-039 chr16 67234525 68248432 1013908 * c(NUTF2, CTCF, NRN1L, CARMIL2, KCTD19, CTRL, AGRP, EDC4, PLEKHG4, LRRC29, TMEM208, FHOD1, ZDHHC1, HSD11B2, C16orf86, LCAT, MIR328, NFATC3, PARD6A, TPPP3, DUS2, LRRC36, DDX28, TSNAXIP1, PSKH1, PSMB10, THAP11, RANBP10, DPEP2, DPEP3, ACD, SLC9A5, SLC12A4, FAM65A, ELMO3, CENPT, GFOD2, ENKD1, ATP6V0D1) 0.358234088772775 9 0.143343798067598 0.788798941612373 2720 0.331682503295091 3 2 1 -6.79652418436331 LTS-039 chr16 68248433 68255092 6660 * NFATC3 NA 0 NA 1.142 1 NA NA NA NA NA LTS-039 chr16 68255093 68363183 108091 * c(PLA2G15, NFATC3, PRMT7, ESRP2, SLC7A6OS, SLC7A6) 0.34566643225572 5 0.035024277294471 1.03527040728037 430 0.4518354673483 6 4 2 -6.78580440338502 LTS-039 chr16 68363184 68371291 8108 * PRMT7 NA 0 NA 0.706 1 NA NA NA NA NA LTS-039 chr16 68371292 69336239 964948 * c(CDH3, ZFP90, HAS3, PRMT7, CHTF8, SMPD3, SNTB2, TANGO6, UTP4, CDH1) 0.349773426408155 23 0.0663516205484622 0.772756791498706 985 1.58871374609976 6 4 2 -6.78963781741292 LTS-039 chr16 69336240 69965056 628817 * c(MIR1538, NFAT5, WWP2, TMED6, NQO1, VPS4A, NOB1, NIP7, PDF, SNTB2, TERF2, CYB5B, COG8) 0.323737501185102 19 0.0962886741622805 1.13492901905269 891 0.615370306499458 7 5 2 -6.79730313135622 LTS-039 chr16 69965057 70497724 532668 * c(MIR1972-1, SMG1P7, LOC100506083, WWP2, DDX19B, EXOSC6, AARS, FUK, PDXDC2P, CLEC18C, CLEC18A, MIR140, PDPR, DDX19A, ST3GAL2) 0.372126791960425 23 0.0767083950139269 0.810021187270575 795 0.444861943206227 3 2 1 -6.76031326189054 LTS-039 chr16 70497725 70553580 55856 * c(FUK, COG4) 0.112624214138548 3 0.0920814856526544 0.526970667147681 239 0.180229534880205 3 3 0 -6.82771840588983 LTS-039 chr16 70553581 71165847 612267 * c(SNORD111B, VAC14-AS1, IL34, SF3B3, COG4, HYDIN, VAC14, SNORD111, MTSS1L) 0.408959984191707 77 0.0753097862815613 0.960996795083332 1080 0.442728453842992 5 3 2 -6.75579019072576 LTS-039 chr16 71165848 71167220 1373 * HYDIN 0.389171880501972 3 0.142944044996635 0.67589913381993 31 0.410486954463776 8 5 3 -6.73730783228803 LTS-039 chr16 71167221 71418291 251071 * c(HYDIN, CMTR2, CALB2) 0.235 1 NA 0.698060504393071 157 0.201171753260687 3 3 0 -5.76571455969792 LTS-039 chr16 71418292 71571976 153685 * c(CHST4, ZNF19, ZNF23, CALB2) 0.346254374862734 6 0.0725782336516948 0.729687263488426 238 0.292212157222393 3 2 1 -6.80341775215435 LTS-039 chr16 71571977 72834105 1262129 * c(SNORA70D, CHST4, AP1G1, DHODH, PHLPP2, HP, HPR, ATXN1L, PKD1L3, ZFHX3, TXNL4B, ZNF821, TAT, SNORD71, PMFBP1, MARVELD3, DHX38, IST1) 0.305148361061153 19 0.0581945718012815 0.967512645831602 1555 0.468028231720113 4 3 1 -6.76613093267432 LTS-039 chr16 72834106 72845477 11372 * ZFHX3 NA 0 NA 1.9 1 NA NA NA NA NA LTS-039 chr16 72845478 74367444 1521967 * c(LINC01568, HCCAT5, LOC283922, ZFHX3, PSMD7) 0.335116860156909 2 0.171119841047145 1.33406360850451 311 0.615121868814994 6 4 2 -6.75057711938414 LTS-039 chr16 74367445 74367458 14 * LOC283922 NA 0 NA 0.577 1 NA NA NA NA NA LTS-039 chr16 74367459 74387789 20331 * LOC283922 0 1 NA 0.637595738773409 82 0.676577591246425 3 3 0 -5.76472859517611 LTS-039 chr16 74387790 74394504 6715 * LOC283922 NA 0 NA 0.851 1 NA NA NA NA NA LTS-039 chr16 74394505 75206107 811603 * c(ZFP1, LDHD, MLKL, GLG1, LOC283922, CLEC18B, RFWD3, FA2H, WDR59, ZNRF1) 0.307957997560577 6 0.0394955693717663 1.08929085228047 716 0.642324615072673 4 3 1 -6.82122997576998 LTS-039 chr16 75206108 75269768 63661 * c(CTRB1, ZFP1, CTRB2, BCAR1) 0.297 1 NA 0.653016534779215 89 0.221980112457995 3 3 0 -5.77006149906288 LTS-039 chr16 75269769 75703308 433540 * c(CFDP1, GABARAPL2, TMEM170A, ADAT1, CHST5, KARS, CHST6, TERF2IP, TMEM231, BCAR1) 0.311319950082047 16 0.0466197383090038 1.17126125633059 609 0.563726810328257 7 5 2 -6.76620541263709 LTS-039 chr16 75703309 75728251 24943 * character(0) NA 0 NA 0.61 1 NA NA NA NA NA LTS-039 chr16 75728252 78085921 2357670 * c(SYCE1L, MIR4719, CLEC3A, ADAMTS18, MON1B, NUDT7, VAT1L, CNTNAP4) 0.341460473301948 22 0.129555984990093 0.750506864880259 661 0.432389904384518 3 2 1 -6.78609478571918 LTS-039 chr16 78085922 78133667 47746 * WWOX NA 0 NA 2.529 1 NA NA NA NA NA LTS-039 chr16 78133668 79632462 1498795 * c(MAF, WWOX) 0.299690019572856 5 0.066368667306192 1.21006942230164 178 0.597840735672537 7 5 2 -6.82146290513423 LTS-039 chr16 79632463 79632577 115 * MAF NA 0 NA 0.582 1 NA NA NA NA NA LTS-039 chr16 79632578 83828665 4196088 * c(LOC100129617, MIR3182, MIR4720, CDH13, MPHOSPH6, PKD1L2, C16orf46, CDYL2, ATMIN, GCSH, HSD17B2, MAF, PLCG2, BCO1, CENPN, CMC2, CMIP, GAN, DYNLRB2, SDR42E1) 0.346780873090369 43 0.104120426060037 0.782881419729848 1505 0.373263545557909 3 2 1 -6.92759556251436 LTS-039 chr16 83828666 84203567 374902 * c(CDH13, DNAAF1, SLC38A8, MLYCD, OSGIN1, HSBP1, NECAB2, HSDL1, MBTPS1) 0.258096106108525 26 0.0490869244692123 1.28117712321628 544 0.61222904126491 5 4 1 -6.77943402538004 LTS-039 chr16 84203568 84812718 609151 * c(DNAAF1, ADAD2, COTL1, TLDC1, WFDC1, KLHL36, TAF1C, USP10, KCNG4, ATP2C2) 0.301027607762219 52 0.0609391897027599 0.964408863819392 803 0.396482791960076 4 3 1 -6.7492148332806 LTS-039 chr16 84812719 84872005 59287 * c(CRISPLD2, USP10) NA 0 NA 0.467 1 NA NA NA NA NA LTS-039 chr16 84872006 84882974 10969 * CRISPLD2 0.0803262844877677 2 0.147078210486802 0.632491929803585 22 0.593093803491707 5 5 0 -6.7382672744971 LTS-039 chr16 84882975 85008645 125671 * c(ZDHHC7, CRISPLD2) 0.145 1 NA 0.571504215598962 127 0.186632447048239 2 2 0 -5.77621346287263 LTS-039 chr16 85008646 85393121 384476 * c(MIR5093, LINC00311, FAM92B, LOC400548, ZDHHC7, KIAA0513) 0.155651422311666 6 0.0391441779408722 0.612987088506148 190 0.26661809838621 2 2 0 -6.80718191360124 LTS-039 chr16 85393122 85956165 563044 * c(MIR1910, EMC8, COX4I1, GSE1, IRF8, C16orf74, GINS2) 0.333 1 NA 0.44709422769158 450 0.234771262722984 2 2 0 -5.93965059786815 LTS-039 chr16 85956166 86369373 413208 * c(LOC146513, IRF8, LINC00917) NA 0 NA 0.351 1 NA NA NA NA NA LTS-039 chr16 86369374 86615313 245940 * c(FLJ30679, FOXF1, FOXL1, FOXC2, FENDRR, MTHFSD, LINC00917) 0.289959900254248 6 0.0638291991698679 0.31212020059033 241 0.123902885636922 1 1 0 -7.17339004623021 LTS-039 chr16 87336546 87443151 106606 * c(C16orf95, ZCCHC14, FBXO31, MAP1LC3B) 0.273040781131032 5 0.0945558036293912 0.484770265604339 229 0.28537250981078 1 1 0 -6.87681702399034 LTS-039 chr16 87443152 87443250 99 * ZCCHC14 NA 0 NA 0.391 1 NA NA NA NA NA LTS-039 chr16 87443251 87870284 427034 * c(ZCCHC14, KLHDC4, JPH3, SLC7A5) 0.264255933483898 7 0.0922359809969851 0.31765391773406 408 0.437734179137577 1 1 0 -6.77907564213199 LTS-039 chr16 87870285 87871446 1162 * SLC7A5 NA 0 NA 0.564 1 NA NA NA NA NA LTS-039 chr16 87871447 88134416 262970 * c(BANP, CA5A, SLC7A5) 0.149118040133907 3 0.112500370369761 0.446414568317383 200 0.181140508498501 2 2 0 -6.87945279866803 LTS-039 chr16 88134417 88493913 359497 * ZNF469 NA 0 NA 0.326 1 NA NA NA NA NA LTS-039 chr16 88493914 88555542 61629 * c(MIR5189, ZFPM1, ZNF469) 0.220680513442488 5 0.148306439509551 0.25583814796342 276 0.105208607319071 1 1 0 -7.05904033302891 LTS-039 chr16 88555543 88580780 25238 * ZFPM1 NA 0 NA 0.424 1 NA NA NA NA NA LTS-039 chr16 88580781 89389632 808852 * c(LOC100287036, MIR4722, CDH15, RNF166, ZC3H18, SLC22A31, CYBA, ZFPM1, SNAI3-AS1, ZNF778, ACSF3, GALNS, IL17C, LINC00304, ANKRD11, SNAI3, CTU2, APRT, PABPN1L, LOC400558, MVD, TRAPPC2L, CDT1, CBFA2T3, PIEZO1) 0.255618725053508 67 0.0818047476281742 0.367312139053808 1842 0.169700778080239 1 1 0 -6.78604796898844 LTS-039 chr16 89389633 89389752 120 * c(LOC100287036, ANKRD11) NA 0 NA 0.372736107174484 3 0.00519615242270664 1 NA NA -5.7745673559206 LTS-039 chr16 89389753 89390651 899 * c(LOC100287036, ANKRD11) NA 0 NA 0.564 1 NA NA NA NA NA LTS-039 chr16 89390652 89574166 183515 * c(LOC100287036, ANKRD11) 0.071 1 NA 0.68868151076141 11 0.322760310728903 3 3 0 -5.76550916022698 LTS-039 chr16 89574167 89624192 50026 * SPG7 0.197157106198317 4 0.071754210097155 0.608837060304998 147 0.239904581022387 2 2 0 -6.89902725657644 LTS-039 chr16 89624193 89627103 2911 * RPL13 NA 0 NA 1.252 1 NA NA NA NA NA LTS-039 chr16 89627104 89631006 3903 * c(SNORD68, RPL13) NA 0 NA 1.32408484798403 61 0.445856128624127 6 NA NA -5.76444635567167 LTS-039 chr16 89631007 89642364 11358 * c(CPNE7, RPL13) NA 0 NA 0.246 1 NA NA NA NA NA LTS-039 chr16 89642365 90141355 498991 * c(VPS9D1-AS1, URAHP, TUBB3, PRDM7, SPATA2L, SPATA33, AFG3L1P, DPEP1, FANCA, TCF25, GAS8, CPNE7, MC1R, CHMP1A, DEF8, GAS8-AS1, DBNDD1, SPIRE2, CDK10, CENPBD1, ZNF276, VPS9D1) 0.133873821914348 45 0.0468539747459588 0.574394803942017 1571 0.25424143440011 2 2 0 -6.94362309125147 LTS-039 chr16 90141356 90161242 19887 * PRDM7 NA 0 NA 0.559118112283818 17 0.249784686692124 2 NA NA -5.76492724165654 LTS-039 chr17 6004 31164 25161 * DOC2B 0.071 1 NA 1.04793422323071 31 0.504365239309427 5 5 0 -5.76444119905275 LTS-039 chr17 31165 613858 582694 * c(LOC100506388, RFLNB, C17orf97, VPS53, DOC2B, RPH3AL) 0.0802242921360495 5 0.0144844744467999 1.30214651297671 300 0.50285445236923 5 5 0 -6.78736715417739 LTS-039 chr17 613859 617832 3974 * VPS53 NA 0 NA 2.228 1 NA NA NA NA NA LTS-039 chr17 617833 1004018 386186 * c(DBIL5P, MIR3183, ABR, TIMM22, GEMIN4, GLOD4, MRM3, VPS53, NXN, FAM57A) 0.0414040947638893 16 0.0105483016010478 1.94209298669491 509 0.947071106807654 10 10 0 -6.74817369897734 LTS-039 chr17 1004019 1012169 8151 * ABR NA 0 NA 1.099 1 NA NA NA NA NA LTS-039 chr17 1012170 1204301 192132 * c(TUSC5, ABR, BHLHA9) 0.0894945117871808 4 0.0103400515794974 0.800749148708771 123 0.268618769230162 4 4 0 -6.93510978486248 LTS-039 chr17 1204302 1247562 43261 * character(0) NA 0 NA 1.497 1 NA NA NA NA NA LTS-039 chr17 1247563 1367557 119995 * c(CRK, MYO1C, YWHAE) NA 0 NA 1.87781053018177 144 3.53163272550356 9 NA NA -5.7644221523366 LTS-039 chr17 1367558 1378356 10799 * MYO1C NA 0 NA 0.966790058918626 95 0.272105539928944 4 NA NA -5.76498176844061 LTS-039 chr17 1378357 1380738 2382 * MYO1C NA 0 NA 1.674 1 NA NA NA NA NA LTS-039 chr17 1380739 2268311 887573 * c(PITPNA-AS1, PRPF8, SMYD4, OVCA2, SLC43A2, WDR81, RTN4RL1, DPH1, SMG6, HIC1, MIR132, MIR212, MIR22, MYO1C, SERPINF1, INPP5K, PITPNA, SERPINF2, TSR1, RPA1, SRR, SNORD91A, SNORD91B, TLCD2, RILP, MIR22HG, SCARF1, SGSM2) 0.0502602119681471 65 0.020722665035025 1.75815992653303 1797 0.840361134837955 9 9 0 -6.74471041210082 LTS-039 chr17 2268312 2280152 11841 * SGSM2 0.116 1 NA 1.44719106994776 57 0.57442567481766 7 7 0 -5.76441218966297 LTS-039 chr17 2280153 2562786 282634 * c(LOC284009, MNT, PAFAH1B1, METTL16, SGSM2) 0.106109521185332 3 0.107374733216587 1.69468060648794 226 0.9755089110691 12 11 1 -6.75430113359988 LTS-039 chr17 2562787 2562816 30 * PAFAH1B1 NA 0 NA 0.776 1 NA NA NA NA NA LTS-039 chr17 2562817 2937789 374973 * c(MIR1253, RAP1GAP2, CLUH, PAFAH1B1) 0.136736451157264 12 0.0796977243886378 0.804624080515293 299 0.308812895804135 3 3 0 -6.79674837467035 LTS-039 chr17 2937790 2965956 28167 * RAP1GAP2 NA 0 NA 0.084 1 NA NA NA NA NA LTS-039 chr17 2965957 3337123 371167 * c(OR1A2, OR3A4P, OR1D2, OR3A1, OR3A2, OR1D4, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, OR3A3) 0.157635768102211 9 0.0671474331436264 0.408861124621533 259 0.276308842144698 2 2 0 -6.92619185765951 LTS-039 chr17 3337124 3524601 187478 * c(TRPV3, SHPK, ASPA, TRPV1, OR1E2, SPATA22) 0.134725488106416 23 0.0489738576709847 0.624122627248485 449 0.33234299873125 3 3 0 -6.80805056298554 LTS-039 chr17 3524602 4607250 1082649 * c(P2RX5-TAX1BP3, MYBBP1A, CYB5D2, GGT6, SPNS2, CTNS, SPNS3, ZZEF1, SHPK, ALOX15, PELP1, TAX1BP3, SMTNL2, ITGAE, ATP2A3, P2RX1, P2RX5, ANKFY1, NCBP3, UBE2G1, EMC6, GSG2, CAMKK1) 0.0857896011322263 32 0.0355153164368967 0.892592582084997 2029 0.353707637096395 4 4 0 -6.77578596927743 LTS-039 chr17 4607251 4700872 93622 * c(LOC101559451, PELP1, VMO1, GLTPD2, MED11, ARRB2, PSMB6, CXCL16, ZMYND15, TM4SF5) 0.061862420061227 15 0.0210434923771833 1.480842168135 305 0.597287242130396 7 7 0 -6.74190200052443 LTS-039 chr17 4700873 4843386 142514 * c(C17orf107, CHRNE, GP1BA, MINK1, PLD2, PSMB6, SLC25A11) 0.0916670652821506 18 0.0489720475159912 0.929354095960481 560 0.357484155828139 4 4 0 -6.73747957549989 LTS-039 chr17 4843387 4880466 37080 * c(ENO3, CAMTA2, RNF167, PFN1, SLC25A11, SPAG7) 0.0775523546537325 6 0.021694853460364 1.36771667264057 268 0.670423213909114 5 5 0 -6.73973804565239 LTS-039 chr17 4880467 5312141 431675 * c(LOC100130950, KIF1C, ZFP3, CAMTA2, INCA1, SCIMP, NUP88, SLC52A1, ZNF232, ZNF594, USP6, RABEP1) 0.0997240525276662 14 0.0439303269550049 0.815861787068162 804 0.313824390083656 4 4 0 -6.7598146227715 LTS-039 chr17 5312142 5393991 81850 * c(NUP88, DERL2, DHX33, C1QBP, MIS12, RPAIN) NA 0 NA 1.21953410749812 380 0.553476437115584 6 NA NA -5.76452523666651 LTS-039 chr17 5393992 6493332 1099341 * c(NLRP1, WSCD1, AIPL1, LOC339166, FAM64A, LOC728392, MIS12, PITPNM3, KIAA0753) 0.105989050018871 20 0.0500101042422008 0.686832059438702 484 0.329812739156913 3 3 0 -6.78369375996303 LTS-039 chr17 6493333 6588145 94813 * c(MIR4520-1, MIR4520-2, ALOX15P1, SLC13A5, MED31, TXNDC17, KIAA0753) 0.075220037677554 8 0.0278641474710014 1.30282779626059 220 0.615605018491589 5 5 0 -6.75139659133891 LTS-039 chr17 6588146 6616746 28601 * SLC13A5 NA 0 NA 0.611620229609327 93 0.174202056460273 2 NA NA -5.77575127770551 LTS-039 chr17 6616747 6659328 42582 * XAF1 NA 0 NA 2.107 1 NA NA NA NA NA LTS-039 chr17 6659329 6913706 254378 * c(ALOX12-AS1, FBXO39, ALOX12, ALOX12P2, XAF1, TEKT1) 0.0807270548410314 11 0.0414923870344691 0.982031333686304 283 0.543967137655031 5 5 0 -6.73774196652454 LTS-039 chr17 6913707 6947267 33561 * c(ALOX12-AS1, MIR497HG, RNASEK-C17orf49, SLC16A11, SLC16A13, ALOX12, BCL6B, MIR497) 0.0669168619513439 2 0.00212132034355964 1.51483589894783 239 0.555336440214176 6 6 0 -6.85247096319378 LTS-039 chr17 6947268 6978412 31145 * CLEC10A NA 0 NA 0.781 1 NA NA NA NA NA LTS-039 chr17 6978413 7107098 128686 * c(CLEC10A, DLG4, ASGR1, ASGR2) 0.102327681364657 7 0.0210068016196115 0.763509646015497 228 0.429770878333819 4 4 0 -6.80942873502814 LTS-039 chr17 7107099 7107324 226 * DLG4 NA 0 NA 1.591 1 NA NA NA NA NA LTS-039 chr17 7107325 7219602 112278 * c(GABARAP, CLDN7, DLG4, DVL2, EIF5A, CTDNEP1, ELP5, GPS2, ACADVL, MIR324, YBX2, SLC2A4, PHF23, NEURL4) 0.079692062070624 7 0.0207685659912603 1.42975368368831 678 0.55454845544056 5 5 0 -6.75136285418842 LTS-039 chr17 7219603 7220556 954 * c(GPS2, NEURL4) NA 0 NA 0.755 1 NA NA NA NA NA LTS-039 chr17 7220557 7317755 97199 * c(TMEM256-PLSCR3, KCTD11, TMEM256, GPS2, TMEM95, PLSCR3, NLGN2, NEURL4, TNK1, ACAP1) 0.0858504934581668 21 0.0353270434653114 1.03385680853271 523 0.436431298137393 5 5 0 -6.75415688976687 LTS-039 chr17 7317756 7330877 13122 * c(C17orf74, SPEM1, NLGN2) 0.0945379322856999 4 0.0401445305531567 0.665448326070482 171 0.276492569590707 4 4 0 -6.74205709346591 LTS-039 chr17 7330878 7338767 7890 * c(C17orf74, TMEM102) NA 0 NA 2.122 1 NA NA NA NA NA LTS-039 chr17 7338768 7399320 60553 * c(CHRNB1, FGF11, TMEM102, POLR2A, ZBTB4, SLC35G6) 0.0978748516649662 5 0.0223226342531521 1.31919585433155 323 0.532054366012875 4 4 0 -6.7605993327501 LTS-039 chr17 7399321 7452833 53513 * c(TNFSF12-TNFSF13, POLR2A, TNFSF12) 0.149 1 NA 0.665109035377076 185 0.232398081473622 3 3 0 -5.76708367994104 LTS-039 chr17 7452834 7490292 37459 * c(SENP3-EIF4A1, SENP3, SNORA67, TNFSF12-TNFSF13, SNORA48, SNORD10, TNFSF13, TNFSF12, MPDU1, CD68) 0.0986206698564515 5 0.0240873410736843 1.48278765750097 291 0.516996820912154 14 13 1 -6.7629657907459 LTS-039 chr17 7490293 7580759 90467 * c(SAT2, ATP1B2, SHBG, SOX15, TP53, FXR2, MPDU1) 0.0797261268051579 6 0.047961095344734 0.899566579055111 343 0.357305959749037 5 5 0 -6.74615600586301 LTS-039 chr17 7580760 7589596 8837 * c(WRAP53, TP53) NA 0 NA 4.953 1 NA NA NA NA NA LTS-039 chr17 7589597 7591512 1916 * c(WRAP53, TP53) NA 0 NA 2.54359556180726 40 0.714812256147348 13 NA NA -5.76441040372262 LTS-039 chr17 7591513 7646689 55177 * c(DNAH2, EFNB3, WRAP53) 0.0653228670763154 6 0.0270585784302625 1.03568896028729 221 0.445241199751771 6 6 0 -6.74434839681173 LTS-039 chr17 7646690 7660431 13742 * c(RPL29P2, DNAH2) NA 0 NA 0.827 1 NA NA NA NA NA LTS-039 chr17 7660432 7734155 73724 * DNAH2 0.09 1 NA 0.712327622532091 316 0.19502841830398 3 3 0 -5.76441278709443 LTS-039 chr17 7734156 7734372 217 * DNAH2 NA 0 NA 0.979 1 NA NA NA NA NA LTS-039 chr17 7734373 7756039 21667 * c(DNAH2, KDM6B) 0.0840173766547165 2 0.0240416305603426 1.14865558798272 173 0.363597806420753 5 5 0 -6.75676155856755 LTS-039 chr17 7756040 7756277 238 * KDM6B NA 0 NA 2.54 1 NA NA NA NA NA LTS-039 chr17 7756278 7797281 41004 * c(CHD3, CYB5D1, KDM6B, NAA38, TMEM88) NA 0 NA 1.85810481948088 111 0.666665920679353 9 NA NA -5.76447824733385 LTS-039 chr17 7797282 7797433 152 * CHD3 NA 0 NA 1.051 1 NA NA NA NA NA LTS-039 chr17 7797434 7815900 18467 * c(CHD3, SCARNA21) 0.078 1 NA 0.930487076893396 213 0.354951503638645 4 4 0 -5.76456939294631 LTS-039 chr17 7815901 7840094 24194 * c(CHD3, CNTROB, LOC284023, TRAPPC1, KCNAB3) 0.082 1 NA 1.55034032721776 150 0.586579424924678 8 8 0 -5.76447758674999 LTS-039 chr17 7840095 7840097 3 * CNTROB NA 0 NA 0.968 1 NA NA NA NA NA LTS-039 chr17 7840098 8047074 206977 * c(MIR4314, CNTROB, ALOX12B, ALOX15B, GUCY2D, PER1, ALOXE3, HES7) 0.0882803032178001 15 0.0411977808001492 0.963483616533831 581 0.424360403126803 4 4 0 -6.75454566888764 LTS-039 chr17 8047075 8135121 88047 * c(NA, MIR4521, LINC00324, PER1, BORCS6, VAMP2, CTC1, TMEM107, AURKB) 0.0662556838893514 13 0.0427813462825048 1.4274352020237 373 0.631021630469544 6 6 0 -6.73613923003267 LTS-039 chr17 8135122 8215390 80269 * c(ARHGEF15, RANGRF, SLC25A35, PFAS, CTC1) 0.074324105431527 11 0.0270124550397169 0.878216646326511 316 0.435747006330761 5 5 0 -6.7631943375786 LTS-039 chr17 8215391 8215411 21 * ARHGEF15 NA 0 NA 0.471 1 NA NA NA NA NA LTS-039 chr17 8215412 8225849 10438 * ARHGEF15 0.112622424069822 7 0.0265939484702459 0.549717441786105 120 0.200824323635324 3 3 0 -6.78281040009822 LTS-039 chr17 8225850 8243110 17261 * character(0) NA 0 NA 1.797 1 NA NA NA NA NA LTS-039 chr17 8243111 8659832 416722 * c(LOC100128288, KRBA2, CCDC42, ODF4, SPDYE4, MYH10, RPL26, RNF222, NDEL1) 0.0985250421815799 11 0.0523738310782988 1.0235490078821 525 0.551575176765062 4 4 0 -6.75088206422036 LTS-039 chr17 8659833 10222271 1562439 * c(USP43, CFAP52, PIK3R6, MFSD6L, DHRS7C, PIK3R5, SPDYE4, RCVRN, GAS7, MYH13, GLP2R, NTN1, STX8) 0.100806348184579 33 0.0347720117771506 0.797350208885586 1112 0.361016132629373 4 4 0 -6.83669314221725 LTS-039 chr17 10222272 10222389 118 * MYH13 NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr17 10222390 10532025 309636 * c(MYH1, MYH2, MYH3, MYH4, MYH8, MYH13) 0.139193627054186 12 0.0760685496274528 0.543351751204217 867 0.205470188505436 2 2 0 -6.78026872942636 LTS-039 chr17 10532026 10532946 921 * MYH3 NA 0 NA 1.105 1 NA NA NA NA NA LTS-039 chr17 10532947 10728972 196026 * c(LINC00675, MAGOH2P, TMEM220-AS1, TMEM220, MYH3, ADPRM, SCO1, PIRT) 0.0906422591507893 7 0.0544299462393547 0.778984518817443 306 0.352565053942291 4 4 0 -6.75466299488904 LTS-039 chr17 10728973 11144974 416002 * c(SHISA6, PIRT) NA 0 NA 0.33 1 NA NA NA NA NA LTS-039 chr17 11144975 11882005 737031 * c(DNAH9, SHISA6, ZNF18) 0.0370390493985842 3 0.118934155453063 0.507887622001553 509 0.241123552694337 2 2 0 -7.32953815744695 LTS-039 chr17 11882006 12812410 930405 * c(MIR744, LINC00670, MAP2K4, ZNF18, MYOCD, ARHGAP44) 0.1020540144315 4 0.0888988188897918 0.686695872628116 361 0.34415480205538 3 3 0 -6.76177704703694 LTS-039 chr17 12812411 12819113 6703 * ARHGAP44 NA 0 NA 1.143 1 NA NA NA NA NA LTS-039 chr17 12819114 12914016 94903 * c(ELAC2, ARHGAP44) 0.0668800650067509 5 0.0149766484902331 1.32826812729025 211 0.458851962897251 6 6 0 -6.73654287701537 LTS-039 chr17 12914017 12914024 8 * ELAC2 0.076 1 NA 3.182 1 NA NA NA NA NA LTS-039 chr17 12914025 13505233 591209 * c(ELAC2, HS3ST3A1) 0.0309728494670963 9 0.00507718207057594 2.39173055109312 112 1.18300358847617 14 14 0 -6.74478307587612 LTS-039 chr17 13505234 13927975 422742 * c(CDRT15P1, HS3ST3A1) NA 0 NA 0.812 1 NA NA NA NA NA LTS-039 chr17 13927976 15406485 1478510 * c(TVP23C-CDRT4, MIR4731, COX10-AS1, COX10, CDRT15, TVP23C, CDRT4, PMP22, TEKT3, MGC12916, CDRT7, CDRT15P1, HS3ST3B1) 0.120607410271658 32 0.102140355480789 0.879175062508075 577 0.521021815566181 4 4 0 -6.77028518182272 LTS-039 chr17 15406486 15440242 33757 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 0.478 1 NA NA NA NA NA LTS-039 chr17 15440243 15450416 10174 * c(TVP23C-CDRT4, TVP23C) 0.113298951138051 3 0.01955334583475 0.433116150085419 43 0.230952987406586 3 3 0 -6.82018654725892 LTS-039 chr17 15450417 15469198 18782 * c(TVP23C-CDRT4, TVP23C) NA 0 NA 1.43528281838934 40 1.11376113076829 7 NA NA -5.76441015529082 LTS-039 chr17 15469199 15532440 63242 * c(TRIM16, CDRT1) 0.0775829492796513 7 0.0315964132985586 0.564529548101121 233 0.397420812589273 5 5 0 -6.83200766516218 LTS-039 chr17 15532441 15620947 88507 * c(TRIM16, ZNF286A) 0.162381530483376 5 0.122310261221207 1.02387892251214 156 0.631245610521227 8 7 1 -6.76066350047741 LTS-039 chr17 15620948 15643808 22861 * c(TBC1D26, ZNF286A) 0.0956144518097456 7 0.0374063911014962 0.497255523518879 120 0.464016840751928 4 4 0 -6.75472269280663 LTS-039 chr17 15643809 15643818 10 * TBC1D26 NA 0 NA 0.71 1 NA NA NA NA NA LTS-039 chr17 15643819 16340251 696433 * c(MIR1288, ZSWIM7, ADORA2B, CENPV, TBC1D26, MEIS3P1, TRPV2, TTC19, CDRT15P2, UBB, PIGL, NCOR1) 0.0900861583762675 12 0.0747729391173199 1.23022920435663 690 1.63168777368696 5 5 0 -6.74851479158704 LTS-039 chr17 16340252 16347483 7232 * c(LRRC75A-AS1, SNORD49A, LRRC75A, TRPV2, SNORD49B, SNORD65) 0.035544017736405 2 0.0289913780286484 2.47828146804976 79 0.681053564802709 12 12 0 -6.73362438204864 LTS-039 chr17 16347484 16350189 2706 * c(LRRC75A-AS1, LRRC75A) NA 0 NA 1.193 1 NA NA NA NA NA LTS-039 chr17 16350190 17696707 1346518 * c(FAM106CP, PEMT, RAI1, LRRC75A-AS1, SMCR5, NA, USP32P1, FLCN, PLD6, MPRIP, TNFRSF13B, LRRC75A, KRT16P2, RASD1, MED9, NT5M, ZNF287, ZNF624, COPS3, CCDC144A) 0.0881637972374506 26 0.0588375207342547 1.00497776480053 1114 0.541404973706237 5 5 0 -6.75822364717075 LTS-039 chr17 17696708 17707491 10784 * RAI1 0.137 1 NA 0.673395477282415 124 0.235830688331433 3 3 0 -5.76475811852143 LTS-039 chr17 17707492 17712393 4902 * RAI1 NA 0 NA 1.496 1 NA NA NA NA NA LTS-039 chr17 17712394 18003031 290638 * c(RAI1, TOM1L2, DRG2, SREBF1, MIR33B, GID4, DRC3, ATPAF2) NA 0 NA 1.29486939958267 575 0.651163010128595 6 NA NA -5.76486192449961 LTS-039 chr17 18003032 18003719 688 * DRG2 NA 0 NA 0.446 1 NA NA NA NA NA LTS-039 chr17 18003720 18054851 51132 * c(DRG2, MYO15A) 0.0737767480362594 6 0.0520682244752018 0.802228977844824 319 0.334528559042022 5 5 0 -6.76268695800358 LTS-039 chr17 18054852 18055050 199 * MYO15A NA 0 NA 1.327 1 NA NA NA NA NA LTS-039 chr17 18055051 18291618 236568 * c(MIEF2, SMCR8, FLII, LLGL1, MYO15A, ALKBH5, EVPLL, SHMT1, TOP3A) 0.0877038499081029 23 0.0305194812403138 1.10399636400936 892 0.422590935092008 5 5 0 -6.77913876075904 LTS-039 chr17 18291619 18314964 23346 * EVPLL 0.325 1 NA 1.19977136146503 5 0.730877554724456 6 6 0 -5.76445891899503 LTS-039 chr17 18314965 18315303 339 * character(0) 0.447 1 NA 1.64828185954001 14 0.847276947210725 8 8 0 -5.76441026249509 LTS-039 chr17 18315304 18315317 14 * character(0) NA 0 NA 0.19 1 NA NA NA NA NA LTS-039 chr17 18315318 18456685 141368 * c(USP32P2, CCDC144B, KRT17P5, LGALS9C, KRT16P1, FAM106A) 0.234786390871496 4 0.179072378290642 0.141354863114943 73 0.178392671389492 0 0 0 -7.4654237858187 LTS-039 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 0.822 1 NA NA NA NA NA LTS-039 chr17 18483256 18554954 71699 * c(TBC1D28, CCDC144B) 0.216833338275869 4 0.175656862471505 0.776433080087576 76 0.610200812933958 6 5 1 -6.75981393109088 LTS-039 chr17 18554955 18563827 8873 * ZNF286B 0.088 1 NA 0.518181397468923 57 0.361694061307291 2 2 0 -5.76443363610236 LTS-039 chr17 18563828 18585107 21280 * c(FOXO3B, ZNF286B) 0.0852690117400976 2 0.0494974746830583 0.738331135040357 118 0.296334427270517 5 5 0 -6.76198545443995 LTS-039 chr17 18585108 18682274 97167 * c(FBXW10, TRIM16L, ZNF286B) 0.141060417337406 6 0.1543572695621 1.08514028311593 199 0.609381091855423 8 7 1 -6.77149014177119 LTS-039 chr17 18682275 18710079 27805 * c(FBXW10, TVP23B) 0.0440445610633146 2 0.00919238815542512 0.569786226289084 89 0.796694331769562 10 10 0 -6.77997939740614 LTS-039 chr17 18710080 18769081 59002 * PRPSAP2 NA 0 NA 1.239 1 NA NA NA NA NA LTS-039 chr17 18769082 19247925 478844 * c(MIR1180, EPN2-AS1, EPN2-IT1, GRAP, SLC5A10, EPN2, B9D1, GRAPL, PRPSAP2, FAM83G) 0.0585333419305023 10 0.0191441897190766 0.942979911518649 504 0.453818143582012 7 7 0 -6.96901555349154 LTS-039 chr17 19247926 19290512 42587 * c(B9D1, MFAP4, MAPK7) 0.049 1 NA 1.86296537720609 158 0.943592997312891 9 9 0 -5.76445090274891 LTS-039 chr17 19290513 19314586 24074 * c(MFAP4, RNF112) NA 0 NA 0.821 1 NA NA NA NA NA LTS-039 chr17 19314587 21147560 1832974 * c(LOC100287072, AKAP10, SLC47A2, ALDH3A1, ALDH3A2, USP22, CDRT15L2, NATD1, DHRS7B, LGALS9B, CCDC144NL, CCDC144CP, SLC47A1, KRT16P3, SNORA59A, RNF112, TMEM11, SPECC1, ULK2) 0.105429080208241 21 0.0619529006969158 1.03791330413079 1494 0.628649262765142 4 4 0 -6.81247746084693 LTS-039 chr17 21147561 21194769 47209 * c(NATD1, MAP2K3) 0.273 1 NA 1.16184107057951 21 0.442144487265246 6 6 0 -5.76523065793489 LTS-039 chr17 21194770 22066835 872066 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.313121142414439 101 0.0907194205632219 1.15767134897456 454 0.560708904929758 7 5 2 -6.80824743804768 LTS-039 chr17 22066836 22066858 23 * character(0) NA 0 NA 1.285 1 NA NA NA NA NA LTS-039 chr17 25620838 25752969 132132 * c(MIR4522, WSB1, TBC1D3P5) 0 1 NA 1.45037303617226 73 0.571057301328251 7 7 0 -5.76444494481538 LTS-039 chr17 25752970 25877691 124722 * c(TBC1D3P5, KSR1) 0.175 1 NA 1.36041648691853 6 0.766822904370146 7 7 0 -5.76475507645654 LTS-039 chr17 25877692 25887409 9718 * KSR1 NA 0 NA 0.815 1 NA NA NA NA NA LTS-039 chr17 25887410 26210227 322818 * c(LYRM9, LGALS9, NOS2, KSR1) 0.0691121937971425 15 0.0309981566272208 0.850770834971855 458 0.405948963519412 5 5 0 -6.85906389223552 LTS-039 chr17 26210228 26219388 9161 * c(LYRM9, NOS2) NA 0 NA 1.343 1 NA NA NA NA NA LTS-039 chr17 26219389 26690239 470851 * c(MIR4723, TMEM199, LYRM9, SARM1, PPY2P, PYY2, POLDIP2, TMEM97, KRT18P55, NOS2, NLK, TNFAIP1, IFT20) 0.067 1 NA 1.35187605730218 455 0.621957052477963 7 7 0 -5.7668966028726 LTS-039 chr17 26690240 26874923 184684 * c(SLC46A1, SARM1, SEBOX, VTN, FOXN1, SLC13A2, UNC119) NA 0 NA 0.93716004193558 425 0.334433515720676 4 NA NA -5.76685656165097 LTS-039 chr17 26874924 26875010 87 * UNC119 NA 0 NA 1.826 1 NA NA NA NA NA LTS-039 chr17 26875011 27038022 163012 * c(SPAG5-AS1, SPAG5, SGK494, PROCA1, ALDOC, SDF2, SUPT6H, UNC119, PIGS, KIAA0100) 0 2 0 1.18477528681994 867 0.454278465153335 0 0 0 -Inf LTS-039 chr17 27038023 27038591 569 * PROCA1 NA 0 NA 1.773 1 NA NA NA NA NA LTS-039 chr17 27038592 27053049 14458 * c(NARR, TLCD1, PROCA1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, RPL23A, RAB34) NA 0 NA 2.38040089526719 164 0.983339441079155 12 NA NA -5.76441339406001 LTS-039 chr17 27053050 27283768 230719 * c(MIR451B, MIR4732, TLCD1, SEZ6, DHRS13, FLOT2, ERAL1, NEK8, MIR144, FAM222B, MIR451A, PHF12, TRAF4) NA 0 NA 1.37472695406828 594 0.615735058546338 7 NA NA -5.76504192750558 LTS-039 chr17 27283769 27494082 210314 * c(SEZ6, MYO18A, PIPOX, TIAF1) 0.125594757522043 8 0.0417475405605785 0.99387278937611 453 0.355650764860062 3 3 0 -6.85557644464742 LTS-039 chr17 27494083 27528619 34537 * MYO18A NA 0 NA 0.456 1 NA NA NA NA NA LTS-039 chr17 27528620 27530504 1885 * character(0) 0.087 1 NA 0.505711172785211 50 0.223902569918986 2 2 0 -5.764462938371 LTS-039 chr17 27530505 27573746 43242 * character(0) NA 0 NA 1.295 1 NA NA NA NA NA LTS-039 chr17 27573747 27825303 251557 * c(MIR4523, CRYBA1, NUFIP2, TAOK1) 0.045 1 NA 1.50408145510079 145 1.00674383519972 7 7 0 -5.76475792425974 LTS-039 chr17 27825304 27825402 99 * TAOK1 NA 0 NA 1.157 1 NA NA NA NA NA LTS-039 chr17 27825403 28601171 775769 * c(MIR3184, ABHD15, ANKRD13B, GIT1, EFCAB5, MIR423, TAOK1, BLMH, SLC6A4, NSRP1, CORO6, SSH2, TP53I13) 0.0699954496320552 6 0.0515855276862287 0.955861060049406 1077 0.441660639415398 5 5 0 -6.78368610664771 LTS-039 chr17 28601172 28853765 252594 * c(CPD, TMIGD1, BLMH, GOSR1) NA 0 NA 1.34039586590147 396 0.405321109629785 7 NA NA -5.76853483855465 LTS-039 chr17 28853766 30708869 1855104 * c(MIR365B, MIR4724, MIR4733, MIR4725, LRRC37B, LRRC37BP1, RHBDL3, EVI2A, EVI2B, SUZ12, TBC1D29, MIR193A, SUZ12P1, NF1, OMG, ARGFXP2, DPRXP4, CRLF3, RHOT1, COPRS, ADAP2, UTP6, C17orf75, SH3GL1P1, SH3GL1P2, MIR632, ZNF207, TEFM, ATAD5, RNF135, RAB11FIP4, GOSR1) 0.108063508054591 30 0.0603841057720081 0.678629153415236 2195 0.347456988212943 3 3 0 -6.77461219418417 LTS-039 chr17 30708870 33750123 3041254 * c(AA06, RAD51L3-RFFL, CCT6B, RFFL, TMEM132E, SPACA3, SLC35G3, UNC45B, SLFN5, TMEM98, LIG3, ASIC2, C17orf102, MYO1D, NLE1, FNDC8, SLFN12, PSMD11, RAD51D, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, CDK5R1, ZNF830, SLFN11) 0.115885787718306 34 0.0635631326793066 0.5767089867604 1859 0.260045920466355 2 2 0 -7.18998943278899 LTS-039 chr17 33750124 33762147 12024 * c(SLFN13, SLFN12) NA 0 NA 1.584 1 NA NA NA NA NA LTS-039 chr17 33762148 33767294 5147 * SLFN13 0.0999329213309213 4 0.0277653861249338 1.00021469045295 100 0.521400261146111 14 13 1 -6.74579724112032 LTS-039 chr17 33767295 34433730 666436 * c(SLFN12L, C17orf50, SLFN13, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, PEX12, LYZL6, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, RASL10B) 0.169888973164521 9 0.114892099138472 0.538398908555133 1056 0.278976998700738 2 2 0 -6.73845557472858 LTS-039 chr17 34433731 34539281 105551 * c(CCL4L1, TBC1D3B, CCL3L3, CCL3L1) NA 0 NA 0.115 1 NA NA NA NA NA LTS-039 chr17 34539282 34641761 102480 * c(CCL4L1, TBC1D3C, CCL3L3, CCL3L1, NA) NA 0 NA 0.221515430387983 41 0.213704140708826 0 NA NA -5.85789237425443 LTS-039 chr17 34641762 34842414 200653 * c(CCL4L1, NA, TBC1D3H) NA 0 NA 0.653 1 NA NA NA NA NA LTS-039 chr17 34842415 36830625 1988211 * c(C17orf96, MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, SOCS7, ACACA, LHX1, LOC440434, GPR179, ARHGAP23, TADA2A, HNF1B, DHRS11, GGNBP2, MRM1, MYO19, SRCIN1, MRPL45, ZNHIT3) 0.119123839131568 26 0.0767574501520612 0.606886820614214 2259 0.328149022506197 3 3 0 -6.9997857324327 LTS-039 chr17 36830626 36909013 78388 * c(C17orf96, MIR4726, MIR4734, CISD3, MLLT6, PSMB3, PCGF2) NA 0 NA 0.885126673935572 320 0.403548727941105 4 NA NA -5.76442603995331 LTS-039 chr17 36909014 36909061 48 * PSMB3 0.079 1 NA 0.592 1 NA NA NA NA NA LTS-039 chr17 36909062 37004452 95391 * c(MIR4727, C17orf98, CWC25, PSMB3, PIP4K2B) 0.114690405644788 4 0.0358422469533743 0.654429000398353 260 0.310119983941949 3 3 0 -6.74779355202237 LTS-039 chr17 37004453 37009964 5512 * c(SNORA21, RPL23) NA 0 NA 1.43039686679752 58 0.966357683006842 7 NA NA -5.76441014746973 LTS-039 chr17 37009965 37459897 449933 * c(LOC100131347, LINC00672, LRRC37A11P, STAC2, ARL5C, LASP1, FBXO47, PLXDC1, RPL19, CACNB1, FBXL20, RPL23) 0.16543178787979 17 0.0587867532097255 0.630035487569447 708 0.333347077981596 2 2 0 -6.80857767813063 LTS-039 chr17 37459898 37499405 39508 * FBXL20 NA 0 NA 0.938 1 NA NA NA NA NA LTS-039 chr17 37499406 37776169 276764 * c(NEUROD2, CDK12, MED1, FBXL20) 0.081 1 NA 1.23868869909791 468 0.662895539324207 6 6 0 -5.76445763140493 LTS-039 chr17 37776170 37778000 1831 * character(0) NA 0 NA 3.544 1 NA NA NA NA NA LTS-039 chr17 37778001 37921772 143772 * c(MIR4728, STARD3, ERBB2, IKZF3, GRB7, PNMT, PPP1R1B, MIEN1, TCAP, PGAP3) 0.0253272200667975 11 0.020250701446886 3.07961198147256 651 1.23978662446432 18 18 0 -6.73389237511207 LTS-039 chr17 37921773 38028550 106778 * c(ZPBP2, IKZF3) 0.0682755439213364 3 0.0276827262626594 1.54280618602615 87 0.817414545806024 6 6 0 -6.73732180214947 LTS-039 chr17 38028551 38028634 84 * ZPBP2 0.06 1 NA 0.076 1 NA NA NA NA NA LTS-039 chr17 38028635 38816502 787868 * c(LRRC3C, SNORD124, CCR7, ZPBP2, GJD3, KRT222, CSF3, WIPF2, CASC3, GSDMA, MSL1, IGFBP4, RAPGEFL1, GSDMB, PSMD3, RARA, SMARCE1, THRA, TOP2A, TNS4, ORMDL3, NR1D1, MED24, CDC6) 0.128807944947686 17 0.0421098004521233 0.710166208929604 1984 0.350635760571889 3 3 0 -6.76241273544192 LTS-039 chr17 38816503 38818093 1591 * KRT222 NA 0 NA 0.361 1 NA NA NA NA NA LTS-039 chr17 38818094 38933508 115415 * c(KRT222, KRT25, KRT24, KRT27, KRT26) 0.256541016348635 2 0.135057395206631 0.45996591023918 186 0.200026315327753 1 1 0 -6.86519811654575 LTS-039 chr17 38933509 39116790 183282 * c(TMEM99, KRT28, KRT23, KRT27, KRT10, KRT12, KRT39, KRT20) 0.114573925575057 12 0.0787695141767192 0.804639503958787 437 0.415568859556066 3 3 0 -6.74502044238669 LTS-039 chr17 39116791 39118432 1642 * KRT39 NA 0 NA 0.397 1 NA NA NA NA NA LTS-039 chr17 39118433 39595171 476739 * c(KRTAP4-9, KRTAP4-7, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, KRTAP29-1, KRT40, KRT31, KRT33A, KRT33B, KRT34, KRT39, KRTAP4-11, KRTAP4-8, KRTAP1-4, KRTAP2-2, KRTAP9-1, KRTAP2-3, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, KRTAP2-1, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, KRTAP4-4, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, KRT38, KRT37) 0.167874567395489 37 0.076222311962055 0.450593608703434 880 0.229647543190072 2 2 0 -6.88141407487064 LTS-039 chr17 39595172 39595527 356 * KRT38 NA 0 NA 0.524 1 NA NA NA NA NA LTS-039 chr17 39595528 39675069 79542 * c(KRT13, KRT15, KRT32, KRT35, KRT38, KRT36) 0.151272924276754 5 0.04827835954131 0.620499962556985 272 0.258953480237831 2 2 0 -6.77016807820388 LTS-039 chr17 39675070 39848936 173867 * c(EIF1, LINC00974, KRT42P, JUP, KRT9, KRT14, KRT15, KRT16, KRT17, KRT19) 0.0912573742630418 16 0.050134776685783 1.00556016841272 317 0.495842574294915 4 4 0 -6.74305421842413 LTS-039 chr17 39848937 39871633 22697 * c(GAST, JUP) NA 0 NA 0.472 1 NA NA NA NA NA LTS-039 chr17 39871634 39921370 49737 * c(GAST, JUP, HAP1) 0.165124149783497 27 0.060984445263547 0.453773239347435 244 0.194010828639086 2 2 0 -6.75657629750078 LTS-039 chr17 39921371 39923611 2241 * JUP NA 0 NA 1.489 1 NA NA NA NA NA LTS-039 chr17 39923612 40461049 537438 * c(P3H4, NT5C3B, CNP, ZNF385C, KCNH4, KAT2A, NKIRAS2, HCRT, KLHL10, JUP, ACLY, KLHL11, RAB5C, FKBP10, STAT5A, STAT5B, DNAJC7, DHX58, TTC25, GHDC, HSPB9) 0.0992680941470582 9 0.0792129689157302 0.683479191788133 1431 0.279078293695886 3 3 0 -6.77835628740369 LTS-039 chr17 40461050 40461481 432 * STAT5A NA 0 NA 0.857 1 NA NA NA NA NA LTS-039 chr17 40461482 40762159 300678 * c(MIR5010, FAM134C, PTRF, PSMC3IP, HSD17B1, NAGLU, ATP6V0A1, STAT3, STAT5A, MLX, TUBG1, COASY) 0.038 1 NA 0.890633283365377 650 0.378504079519144 4 4 0 -5.76441200624616 LTS-039 chr17 40762160 40762527 368 * c(FAM134C, TUBG1) NA 0 NA 0.368 1 NA NA NA NA NA LTS-039 chr17 40762528 41107236 344709 * c(RAMP2-AS1, PTGES3L-AARSD1, PSME3, RAMP2, CNTD1, FAM134C, EZH1, G6PC, TUBG2, CCR10, COA3, AOC2, LINC00671, WNK4, TUBG1, PLEKHH3, AARSD1, VPS25, CNTNAP1, AOC3, BECN1, AOC4P) 0.107663580276256 7 0.0991072050621855 0.620549762625275 1021 0.308968088355504 3 3 0 -6.78158293737952 LTS-039 chr17 41107237 41178062 70826 * c(PTGES3L, PTGES3L-AARSD1, VAT1, RUNDC1, IFI35, RPL27, AARSD1, RND2) NA 0 NA 0.893936651130485 245 0.307719623376389 4 NA NA -5.76441290150659 LTS-039 chr17 41178063 41179128 1066 * RND2 NA 0 NA 0.444 1 NA NA NA NA NA LTS-039 chr17 41179129 41247963 68835 * c(BRCA1, RND2) NA 0 NA 0.51112575678796 189 0.159440639476279 2 NA NA -5.76672352420845 LTS-039 chr17 41247964 41249183 1220 * BRCA1 NA 0 NA 2.178 1 NA NA NA NA NA LTS-039 chr17 41249184 41341027 91844 * c(NBR2, NBR1, BRCA1) 0.086 1 NA 1.23816948227269 77 0.959108981973791 6 6 0 -5.76441823770044 LTS-039 chr17 41341028 41465877 124850 * c(LINC00910, LINC00854, TMEM106A, NBR1) 0.495 1 NA 0.933438704938913 155 0.327551938081219 4 4 0 -5.76586944422243 LTS-039 chr17 41465878 41886449 420572 * c(LINC00910, MIR2117, DHX8, DUSP3, ETV4, C17orf105, ARL4D, MEOX1, MPP3, SOST) 0.339243612285609 8 0.132833945747528 0.948376828502226 385 0.440023466651501 4 3 1 -6.79647819543661 LTS-039 chr17 41886450 41888086 1637 * MPP3 NA 0 NA 0.558 1 NA NA NA NA NA LTS-039 chr17 41888087 41931342 43256 * c(CD300LG, MPP3) 0.211 1 NA 0.579547874492562 109 0.257108209706479 2 2 0 -5.76744135049208 LTS-039 chr17 41931343 41953212 21870 * c(CD300LG, MPP2) 0.126 1 NA 0.497783559263037 43 0.176427231759477 2 2 0 -5.7661467157166 LTS-039 chr17 41953213 42030843 77631 * c(FAM215A, MPP2, PPY, PYY) 0.147317128748196 8 0.0715171058458844 0.471157616550058 168 0.197789901219039 2 2 0 -6.76889153936026 LTS-039 chr17 42030844 42151698 120855 * c(LSM12, NAGS, PYY, TMEM101, G6PC3) NA 0 NA 0.944031056472445 104 0.328618637802662 4 NA NA -5.76659150261721 LTS-039 chr17 42151699 42255130 103432 * c(HDAC5, ASB16-AS1, C17orf53, G6PC3, ASB16) 0.165615845885815 4 0.0145916642870738 0.568286848310132 289 0.214170023512978 2 2 0 -6.82493758403001 LTS-039 chr17 42255131 42255528 398 * c(ASB16-AS1, ASB16) NA 0 NA 0.725 1 NA NA NA NA NA LTS-039 chr17 42255529 42295874 40346 * c(ASB16-AS1, ATXN7L3, UBTF, TMUB2, ASB16) 0.19 1 NA 0.849019758917015 256 0.3238858825816 4 4 0 -5.76496570475821 LTS-039 chr17 42295875 42325757 29883 * UBTF NA 0 NA 0.669 1 NA NA NA NA NA LTS-039 chr17 42325758 43198812 873055 * c(GJC1, C1QL1, RUNDC3A, PLCD3, CCDC43, KIF18B, GPATCH8, FZD2, GFAP, FAM171A2, MEIOC, GRN, ITGA2B, CCDC103, ADAM11, NMT1, SLC25A39, HIGD1B, SLC4A1, DCAKD, DBF4B, EFTUD2) 0.124495137421303 31 0.0444289695281506 0.583148871933746 1702 0.280052752064131 3 3 0 -6.99316897608876 LTS-039 chr17 43198813 43209607 10795 * PLCD3 NA 0 NA 1.345 1 NA NA NA NA NA LTS-039 chr17 43209608 43320628 111021 * c(HEXIM1, PLCD3, HEXIM2, FMNL1, ACBD4) 0.054 1 NA 0.99587224303818 186 1.2463887983709 5 5 0 -5.7646438957664 LTS-039 chr17 43320629 43321070 442 * FMNL1 NA 0 NA 0.596 1 NA NA NA NA NA LTS-039 chr17 43321071 43861968 540898 * c(MAP3K14-AS1, SPATA32, FMNL1, MAP3K14) 0.187559797874842 17 0.0890544281687923 0.601842112004941 490 0.270456285592379 2 2 0 -6.85891475843282 LTS-039 chr17 43861969 43884235 22267 * character(0) NA 0 NA 0.272 1 NA NA NA NA NA LTS-039 chr17 43884236 44105395 221160 * character(0) 0.195658088582812 54 0.0786963953527062 0.363902252914178 362 0.19840052450573 1 1 0 -6.94310376629133 LTS-039 chr17 44105396 44105482 87 * character(0) NA 0 NA 0.515 1 NA NA NA NA NA LTS-039 chr17 44105483 44248814 143332 * character(0) 0.138568740117085 9 0.0473972573046163 0.600869002056473 93 0.212127191880949 3 3 0 -6.88279724023324 LTS-039 chr17 44248815 44248837 23 * character(0) 0.482 1 NA 0.683 1 NA NA NA NA NA LTS-039 chr17 44248838 44364336 115499 * character(0) 0.4005807003699 17 0.123081005128856 0.862322641063791 76 0.491226340084673 5 3 2 -6.74829209487922 LTS-039 chr17 44364337 44408491 44155 * character(0) NA 0 NA 0.122 1 NA NA NA NA NA LTS-039 chr17 44408492 44782233 373742 * character(0) NA 0 NA 0.430062273659256 43 0.306035350341941 1 NA NA -5.86346303252461 LTS-039 chr17 44782234 44788331 6098 * character(0) NA 0 NA 0.881 1 NA NA NA NA NA LTS-039 chr17 44788332 45219332 431001 * c(MIR5089, RPRML, WNT3, WNT9B, GOSR2, CDC27) 0.317981512120374 15 0.150151257070995 0.590391911349246 312 0.252586706264009 3 2 1 -6.94468154820486 LTS-039 chr17 45219333 45229253 9921 * CDC27 0.054 1 NA 0.901688118922956 19 0.391184705330117 4 4 0 -5.7644149414759 LTS-039 chr17 45229254 45785866 556613 * c(EFCAB13, ITGB3, KPNB1, MYL4, MRPL45P2, NPEPPS, TBKBP1, CDC27) 0.147618926627528 17 0.116814898828169 0.684727447272428 684 0.326033869266888 3 3 0 -6.77220932363873 LTS-039 chr17 45785867 45786027 161 * TBKBP1 NA 0 NA 0.544 1 NA NA NA NA NA LTS-039 chr17 45786028 45897461 111434 * c(OSBPL7, TBX21, TBKBP1) 0.143937097893824 6 0.0718693258629855 0.482697458315675 162 0.252210944330634 2 2 0 -6.77255641761932 LTS-039 chr17 45897462 45897560 99 * OSBPL7 NA 0 NA 0.608 1 NA NA NA NA NA LTS-039 chr17 45897561 46266887 369327 * c(MIR1203, CBX1, OSBPL7, MRPL10, SNX11, MIR152, NFE2L1, COPZ2, PNPO, SP2, PRR15L, CDK5RAP3, SP6, SKAP1, LRRC46, SCRN2) 0.104454797283444 21 0.0516068009545438 0.790702229946382 680 0.356398958550277 4 4 0 -6.77695015398362 LTS-039 chr17 46266888 46423195 156308 * SKAP1 NA 0 NA 2.422 1 NA NA NA NA NA LTS-039 chr17 46423196 46608371 185176 * c(HOXB1, SKAP1) 0.0399971921901404 3 0.00264575131106459 2.75160630485449 62 1.19895835938576 11 11 0 -6.76081151631263 LTS-039 chr17 46608372 46620095 11724 * HOXB2 0.011 1 NA 9.237 1 NA NA NA NA NA LTS-039 chr17 46620096 46673275 53180 * c(HOXB-AS1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB-AS3, MIR10A) 0.0160836802488126 9 0.00892250587621612 5.03231085428088 344 4.98183828679647 20 20 0 -7.03186404920347 LTS-039 chr17 46673276 46698737 25462 * c(HOXB6, HOXB7, HOXB8, HOXB9, HOXB-AS3) 0.034 1 NA 2.60053835501279 149 1.33298668713226 13 13 0 -5.76441954198709 LTS-039 chr17 46698738 46882189 183452 * c(MIR3185, HOXB13, TTLL6, HOXB9, PRAC2, MIR196A1, PRAC1) 0.0760159936559579 4 0.0645213143077541 1.31508852068265 228 0.756655474334116 5 5 0 -6.74256534334526 LTS-039 chr17 46882190 48460495 1578306 * c(SLC35B1, CALCOCO2, IGF2BP1, KAT7, NXPH3, SNF8, FLJ40194, B4GALNT2, COL1A1, EME1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, ITGA3, HILS1, NGFR, ABI3, MRPL27, ATP5G1, PDK2, PHB, LRRC59, XYLT2, SGCA, UBE2Z, FLJ45513, FAM117A, SPOP, PPP1R9B) 0.0870740106074405 53 0.0301863828045276 0.854516183914324 2747 0.407582454398858 4 4 0 -6.78763174609027 LTS-039 chr17 48460496 48621130 160635 * c(CHAD, EPN3, RSAD1, LRRC59, SPATA20, ACSF2, MYCBPAP) 0.0975665666521177 11 0.0399631648578356 1.0970534288844 506 0.573627503624377 4 4 0 -6.74750551621059 LTS-039 chr17 48621131 48624451 3321 * SPATA20 NA 0 NA 0.567 1 NA NA NA NA NA LTS-039 chr17 48624452 48745384 120933 * c(CACNA1G-AS1, SPATA20, ABCC3, CACNA1G) 0.0926216387111578 13 0.046217712222447 0.83495887811886 474 0.60462346300468 4 4 0 -6.73590790859916 LTS-039 chr17 48745385 48745752 368 * ABCC3 NA 0 NA 1.133 1 NA NA NA NA NA LTS-039 chr17 48745753 49371442 625690 * c(TOB1, WFIKKN2, TOB1-AS1, NME1, NME2, UTP18, LUC7L3, MBTD1, LINC00483, NME1-NME2, ABCC3, SPAG9, ANKRD40) 0.0583593351553477 23 0.0289649508794101 1.10733949457538 1109 0.578744535613216 7 7 0 -6.80733216221171 LTS-039 chr17 49371443 51902342 2530900 * c(C17orf112, UTP18, CA10, KIF2B) 0.126844835384222 3 0.0418847625435949 0.50144609320514 141 0.235418499719397 2 2 0 -7.17584182041716 LTS-039 chr17 51902343 54972824 3070482 * c(TOM1L1, MIR3614, COX11, ANKFN1, MMD, MTVR2, STXBP4, HLF, C17orf67, TMEM100, PCTP, TRIM25, KIF2B, DGKE, NOG) 0.104049899174272 20 0.0337808728191125 0.740573984094191 690 0.40289660848823 3 3 0 -6.8739470078134 LTS-039 chr17 54972825 56166633 1193809 * c(MSI2, DYNLL2, RNF126P1, CUEDC1, MRPS23, SCPEP1, SRSF1, TRIM25, VEZF1, COIL, AKAP1) 0.0681166806901936 13 0.023790215614289 1.15379587056497 542 0.634186859289313 6 6 0 -6.74510946107047 LTS-039 chr17 56166634 56232510 65877 * DYNLL2 NA 0 NA 0.623 1 NA NA NA NA NA LTS-039 chr17 56232511 56283941 51431 * c(OR4D2, OR4D1, MKS1, MSX2P1, EPX) 0.127377015166322 5 0.0499469718801851 0.535348228995017 135 0.176048119270009 3 3 0 -6.82734693222292 LTS-039 chr17 56283942 56349339 65398 * c(LPO, MPO, MKS1) 0.116789282384088 3 0.0429107601113443 0.951046348772478 166 0.424514884355149 3 3 0 -6.75368949816809 LTS-039 chr17 56349340 56350072 733 * MPO NA 0 NA 0.568 1 NA NA NA NA NA LTS-039 chr17 56350073 56389809 39737 * c(MPO, TSPOAP1) 0.150394513297748 6 0.0720055553412374 0.539922961654672 170 0.226233484069679 2 2 0 -6.74396715864488 LTS-039 chr17 56389810 58053474 1663665 * c(TSPOAP1-AS1, MIR4729, MIR4736, CLTC, HSF5, PPM1E, C17orf47, GDPD1, SKA2, YPEL2, MIR142, MIR21, MIR301A, TRIM37, RNFT1, TUBD1, PTRH2, SEPT4, RNF43, SMG8, PRR11, TEX14, RAD51C, RPS6KB1, TBC1D3P1-DHX40P1, SUPT4H1, MIR454, DHX40, VMP1, MTMR4, TSPOAP1) 0.0985627979100106 18 0.0420679500130521 0.916391235504248 1812 0.476857568066195 4 4 0 -6.73989674026213 LTS-039 chr17 58053475 61666685 3613211 * c(MIR4737, DCAF7, APPBP2, TLK2, C17orf64, EFCAB3, CYB561, MARCH10, ACE, TANC2, METTL2A, NACA2, C17orf82, TBC1D3P2, BCAS3, INTS2, HEATR6, WFDC21P, TBC1D3P1-DHX40P1, LOC653653, SCARNA20, TBX2, CA4, KCNH6, BRIP1, USP32, PPM1D, TBX4, MRC2, MED13) 0.109317472124639 38 0.0681132904901387 0.731606497207537 2423 0.346277663838067 3 3 0 -6.76068344849527 LTS-039 chr17 61666686 61678548 11863 * c(DCAF7, TACO1) NA 0 NA 1.282 1 NA NA NA NA NA LTS-039 chr17 61678549 61949489 270941 * c(DDX42, FTSJ3, CSH2, TCAM1P, MAP3K3, TACO1, CCDC47, PSMC5, SMARCD2, LOC729683, LIMD2, STRADA) NA 0 NA 1.05064165970294 580 0.424770633136072 5 NA NA -5.76478136943548 LTS-039 chr17 61949490 62029263 79774 * c(CSH1, CSH2, CSHL1, GH1, GH2, SCN4A, CD79B) NA 0 NA 0.458623193794501 263 0.192829767231124 2 NA NA -5.79177231754571 LTS-039 chr17 62029264 62034456 5193 * SCN4A NA 0 NA 0.702 1 NA NA NA NA NA LTS-039 chr17 62034457 62122938 88482 * c(ERN1, ICAM2, SCN4A, PRR29) 0.0973173868096959 3 0.0276224546338663 0.680190120358186 154 0.305699282484329 4 4 0 -6.77758326983803 LTS-039 chr17 62122939 62125161 2223 * ERN1 NA 0 NA 1.076 1 NA NA NA NA NA LTS-039 chr17 62125162 62542426 417265 * c(MIR3064, MIR5047, POLG2, DDX5, ERN1, MILR1, PECAM1, TEX2, SMURF2, SNORA50C, SNORD104, CEP95) 0.0795385932641784 8 0.0166024955094967 1.29825443511774 505 0.62253369646117 5 5 0 -6.75673540833513 LTS-039 chr17 62542427 66274455 3732029 * c(SNORA38B, LINC00674, GNA13, LOC146880, CEP112, AMZ2P1, BPTF, ARSG, NOL11, PITPNC1, CACNG5, CACNG4, C17orf58, APOH, LRRC37A3, KPNA2, PLEKHM1P1, LOC440461, AMZ2, PRKCA, PSMD12, SMURF2, MIR634, CACNG1, AXIN2, RGS9, SLC16A6, HELZ) 0.121682240147013 18 0.0714122021392639 0.830110592976143 1807 0.391791476237834 4 4 0 -6.88765330044132 LTS-039 chr17 66274456 66303610 29155 * c(ARSG, SLC16A6) NA 0 NA 1.081 1 NA NA NA NA NA LTS-039 chr17 66303611 66519805 216195 * c(ARSG, WIPI1, PRKAR1A, MIR635) 0.0899137813890284 6 0.0674549232203748 1.21255734362413 147 0.587157511288203 5 5 0 -6.75361008325341 LTS-039 chr17 66519806 66519809 4 * PRKAR1A NA 0 NA 0.723 1 NA NA NA NA NA LTS-039 chr17 66519810 67087493 567684 * c(ABCA9, ABCA8, ABCA6, FAM20A, PRKAR1A) 0.105718914145538 9 0.0667940449774113 0.620645229432518 570 0.341472643302519 3 3 0 -6.81210191806414 LTS-039 chr17 67087494 67092383 4890 * ABCA6 NA 0 NA 1.183 1 NA NA NA NA NA LTS-039 chr17 67092384 69334964 2242581 * c(MIR4524A, MIR4524B, ABCA10, ABCA6, ABCA5, KCNJ2, KCNJ16, KCNJ2-AS1, MAP2K6) 0.113551602346494 8 0.0481543277983847 0.764122988082907 639 0.36327682717052 3 3 0 -6.79403736290612 LTS-039 chr17 70117128 70120551 3424 * SOX9 0.0297363455269111 2 0.00636396103067893 1.57067734243772 42 0.672789752957109 15 15 0 -6.73501775406093 LTS-039 chr17 70120552 70120623 72 * SOX9 NA 0 NA 2.507 1 NA NA NA NA NA LTS-039 chr17 70120624 70122507 1884 * SOX9 0.029143593539449 2 0.00282842712474619 4.0208250512027 43 2.13342900256139 15 15 0 -6.74782338993217 LTS-039 chr17 70122508 71080966 958459 * c(LINC00673, SLC39A11, LINC00511, SOX9) NA 0 NA 0.955225422473657 48 0.839352840877638 4 NA NA -5.76827091677481 LTS-039 chr17 71080967 71364761 283795 * c(SLC39A11, CDC42EP4, SDK2, C17orf80, CPSF4L, SSTR2, FAM104A, COG1) 0.0361116717160356 5 0.0270610421085368 1.609253489354 474 0.690898813811558 11 11 0 -6.77255606146598 LTS-039 chr17 71364762 71365144 383 * SDK2 NA 0 NA 1.015 1 NA NA NA NA NA LTS-039 chr17 71365145 72209953 844809 * c(LINC00469, LOC400620, SDK2, RPL38, MGC16275, TTYH2) 0.0743108458421444 10 0.0281466398231358 0.859582482796536 265 0.392408745550995 5 5 0 -6.90825438812944 LTS-039 chr17 72209954 72211702 1749 * TTYH2 NA 0 NA 0.49 1 NA NA NA NA NA LTS-039 chr17 72211703 72741653 529951 * c(CD300LD, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, RAB37, CD300E, GPR142, BTBD17, GPRC5C, DNAI2, TTYH2) 0.123415804171489 38 0.0570293590632368 0.627903472260777 1019 0.304485477684311 3 3 0 -6.78871771605504 LTS-039 chr17 72741654 72741727 74 * RAB37 NA 0 NA 1.013 1 NA NA NA NA NA LTS-039 chr17 72741728 72957962 216235 * c(MIR3615, USH1G, FDXR, NAT9, FADS6, HID1, GRIN2C, RAB37, OTOP3, TMEM104, OTOP2, SLC9A3R1) 0.2006248562648 8 0.17138964587829 0.807181898485511 607 0.316663256093597 5 4 1 -6.88023765122278 LTS-039 chr17 72957963 72957965 3 * HID1 NA 0 NA 1.202 1 NA NA NA NA NA LTS-039 chr17 72957966 73402334 444369 * c(LOC100287042, MIR3678, ATP5H, GGA3, KCTD2, HID1, GRB2, NT5C, CDR2L, MRPL58, MRPS7, HN1, MIF4GD, SLC25A19, SUMO2, ARMC7, NUP85, SLC16A5) 0.0651970221520402 10 0.0284057897071863 1.15563185736359 721 0.546835959234779 6 6 0 -6.74409996591491 LTS-039 chr17 73402335 73467952 65618 * TMEM94 NA 0 NA 0.651 1 NA NA NA NA NA LTS-039 chr17 73467953 73504442 36490 * c(CASKIN2, TMEM94) 0.147879298889938 8 0.0368306937214058 0.619772337767995 281 0.20738133246855 2 2 0 -6.81020073593801 LTS-039 chr17 73504443 73509767 5325 * CASKIN2 NA 0 NA 1.362 1 NA NA NA NA NA LTS-039 chr17 73509768 73555351 45584 * c(TSEN54, LLGL2, CASKIN2) 0.11258368392886 5 0.0187936159373336 1.0963506681214 89 0.419410875676039 12 11 1 -6.82277300560066 LTS-039 chr17 73555352 73555432 81 * LLGL2 NA 0 NA 0.804 1 NA NA NA NA NA LTS-039 chr17 73555433 73625396 69964 * c(LLGL2, MYO15B, RECQL5) 0.120131554288639 18 0.0618097703637402 0.631999172592888 432 0.249920455152659 3 3 0 -6.74246437495526 LTS-039 chr17 73625397 73839352 213956 * c(SMIM6, MIR4738, UNC13D, GALK1, SAP30BP, H3F3B, ITGB4, SMIM5, UNK, RECQL5) 0.134539089030278 2 0.0961665222413705 0.913461347741904 671 0.442349063604879 3 3 0 -6.7885255855869 LTS-039 chr17 73839353 73839509 157 * UNC13D NA 0 NA 1.331 1 NA NA NA NA NA LTS-039 chr17 73839510 73885130 45621 * c(TRIM65, UNC13D, WBP2, TRIM47) NA 0 NA 1.73176964856174 101 0.442868417085126 9 NA NA -5.76458437472243 LTS-039 chr17 73885131 73885434 304 * TRIM65 NA 0 NA 1.114 1 NA NA NA NA NA LTS-039 chr17 73885435 73996677 111243 * c(TRIM65, ACOX1, MRPL38, FBF1) 0.052 1 NA 1.03466161343696 370 0.361475949003595 5 5 0 -5.76505839002669 LTS-039 chr17 73996678 73997412 735 * CDK3 NA 0 NA 0.671 1 NA NA NA NA NA LTS-039 chr17 73997413 74017678 20266 * c(CDK3, EVPL) 0.00350195267816968 2 0.0162634559672906 0.601742543848331 175 0.232625586259539 20 20 0 -8.1359216429185 LTS-039 chr17 74017679 74017715 37 * EVPL NA 0 NA 0.776 1 NA NA NA NA NA LTS-039 chr17 74017716 74236338 218623 * c(RNF157-AS1, RNF157, EVPL, FOXJ1, EXOC7, ZACN, SRP68, GALR2) 0.0701434170720076 23 0.022009609830735 0.896191683530063 552 0.412520396637669 6 6 0 -6.82467715491862 LTS-039 chr17 74236339 74261247 24909 * RNF157 NA 0 NA 1.443 1 NA NA NA NA NA LTS-039 chr17 74261248 74272009 10762 * c(UBALD2, QRICH2) 0.0572211560545565 2 0.0233345237791561 1.66136203560175 49 0.999527063335524 7 7 0 -6.73804941554429 LTS-039 chr17 74272010 74272749 740 * QRICH2 NA 0 NA 0.847 1 NA NA NA NA NA LTS-039 chr17 74272750 74475384 202635 * c(AANAT, PRPSAP1, UBE2O, RHBDF2, QRICH2, SPHK1) 0.0851998815093007 19 0.0391231374386173 0.754135838398886 497 0.410760534165099 4 4 0 -6.79295062491597 LTS-039 chr17 74475385 74740550 265166 * c(SNHG16, ST6GALNAC2, CYGB, METTL23, JMJD6, MXRA7, ST6GALNAC1, SRSF2, SNORD1A, SNORD1B, SNORD1C, MIR636, PRCD, MFSD11, RHBDF2) 0.0821995041733952 13 0.0233970741103044 1.22529818572951 562 0.58500136398421 5 5 0 -6.75066745985754 LTS-039 chr17 74740551 74750107 9557 * MFSD11 NA 0 NA 0.763 1 NA NA NA NA NA LTS-039 chr17 74750108 76114031 1363924 * c(TNRC6C-AS1, MIR4316, LOC100507351, SEPT9, TMC6, MGAT5B, FLJ45079, TNRC6C, SEC14L1, SNHG20, SCARNA16, MFSD11) 0.105330452029972 8 0.0360356965878478 0.83412568105657 663 0.329302159110479 4 4 0 -6.81258182720267 LTS-039 chr17 76114032 76115043 1012 * TMC6 NA 0 NA 1.583 1 NA NA NA NA NA LTS-039 chr17 76115044 77042802 927759 * c(C17orf99, C1QTNF1-AS1, CEP295NL, LOC100996291, DNAH17-AS1, TMC6, C1QTNF1, CANT1, AFMID, TMC8, TMEM235, BIRC5, LGALS3BP, USP36, TIMP2, TK1, DNAH17, SOCS3, SYNGR2, CYTH1, PGS1) 0.0986601541211691 49 0.0319648244168492 1.00348959351224 1520 0.418347880310795 4 4 0 -6.78366581896033 LTS-039 chr17 77042803 77043640 838 * C1QTNF1 NA 0 NA 0.577 1 NA NA NA NA NA LTS-039 chr17 77043641 77681279 637639 * c(MIR4739, C1QTNF1, RBFOX3, ENGASE) 0.120137311460529 12 0.0620320054243751 0.69376885243352 189 0.380046089459818 3 3 0 -6.73473999575694 LTS-039 chr17 77681280 77758726 77447 * c(ENPP7, CBX2) NA 0 NA 1.25541632941808 82 0.56141019746378 6 NA NA -5.76441085004363 LTS-039 chr17 77758727 77813326 54600 * c(CBX8, CBX2, CBX4) 0.0552553502348484 4 0.030890937182287 2.35334877225884 169 1.3461085751676 8 8 0 -6.73971057239926 LTS-039 chr17 77813327 77914657 101331 * TBC1D16 NA 0 NA 1.223 1 NA NA NA NA NA LTS-039 chr17 77914658 78165242 250585 * c(TBC1D16, GAA, CCDC40, CARD14, EIF4A3) 0.0483142403622814 15 0.0367598383332369 1.44696910821333 434 0.792812181193799 8 8 0 -6.74439313164909 LTS-039 chr17 78165243 78166209 967 * CARD14 NA 0 NA 0.997 1 NA NA NA NA NA LTS-039 chr17 78166210 79519461 1353252 * c(LOC100130370, LOC100294362, MIR1250, MIR3065, MIR3186, MIR4740, MIR4730, BAIAP2, SLC38A10, TEPSIN, CEP131, FSCN2, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, AATK-AS1, BAIAP2-AS1, MIR338, NPTX1, RPTOR, BAHCC1, RNF213, SGSH, ACTG1, MIR657, CARD14, CHMP6, FAAP100, AATK) 0.0959306088869642 68 0.0399511004879957 0.921100068702065 2330 0.415389985458043 4 4 0 -6.73811833165454 LTS-039 chr17 79519462 79520429 968 * character(0) NA 0 NA 1.9 1 NA NA NA NA NA LTS-039 chr17 79520430 79995622 475193 * c(ALYREF, PPP1R27, SLC25A10, NOTUM, CENPX, LRRC45, MYADML2, NPB, GCGR, OXLD1, CCDC137, ARL16, MCRIP1, ARHGDIA, MAFG, P4HB, DCXR, PDE6G, ANAPC11, SIRT7, NPLOC4, PYCR1, PCYT2, RAC3, MRPL12, ASPSCR1, TSPAN10, HGS, MAFG-AS1) 0.0571351723512676 21 0.0375026348280707 1.27341745109 1219 0.612867676183087 7 7 0 -6.74565455652878 LTS-039 chr17 79995623 80000519 4897 * character(0) NA 0 NA 0.652 1 NA NA NA NA NA LTS-039 chr17 80000520 80285012 284493 * c(CSNK1D, FASN, CCDC57, GPS1, RFNG, SECTM1, DUS1L, SLC16A3, CD7) 0.0961590562394959 12 0.0401757502617053 0.998974452536239 825 0.408773188052218 4 4 0 -6.74645057843816 LTS-039 chr17 80285013 80285076 64 * SECTM1 0.077 1 NA 0.164 1 NA NA NA NA NA LTS-039 chr17 80285077 80350385 65309 * c(UTS2R, TEX19, SECTM1, OGFOD3) 0.0844950761727025 5 0.0102615788258922 0.626783946692321 79 0.225708784436124 5 5 0 -7.09834066417755 LTS-039 chr17 80350386 81043039 692654 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, OGFOD3, ZNF750) 0.0591127451050536 16 0.0393013994661768 1.42265574534355 936 0.736136260480518 7 7 0 -6.73308860671142 LTS-039 chr17 81043040 81083625 40586 * METRNL NA 0 NA 1.10922562225209 23 0.182394146029769 5 NA NA -5.76525427620981 LTS-039 chr18 116845 121754 4910 * ROCK1P1 NA 0 NA 0.411296639976812 50 0.218599177510263 1 NA NA -5.76599696740818 LTS-039 chr18 121755 331733 209979 * c(ROCK1P1, COLEC12, USP14, THOC1) 0.135 1 NA 0.760962758707686 181 0.22731590518247 3 3 0 -5.77551716815928 LTS-039 chr18 331734 3215153 2883420 * c(NDC80, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, LPIN2) 0.124983165803511 27 0.0377834962992123 0.672249796086668 1353 0.419429033039977 3 3 0 -6.77690531304567 LTS-039 chr18 3215154 3215156 3 * MYOM1 0.122 1 NA 1.578 1 NA NA NA NA NA LTS-039 chr18 3215157 3729343 514187 * c(MYL12B, MYL12A, DLGAP1-AS1, TGIF1, MYOM1, DLGAP1) 0.0751700445774434 12 0.0414297506922772 1.18017375566422 368 0.571685404323399 5 5 0 -6.74759161213338 LTS-039 chr18 3729344 8832035 5102692 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, RAB12, DLGAP1-AS3, EPB41L3, MTCL1, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.199955997464744 44 0.0759538081501899 0.489582406208245 1603 0.212601826188644 2 2 0 -7.30669527172216 LTS-039 chr18 8832036 9886053 1054018 * c(RALBP1, RAB31, ANKRD12, MTCL1, NDUFV2, TWSG1, TXNDC2, PPP4R1) 0.109421125886119 17 0.057720166727573 1.04592897817181 649 0.509784853514384 4 4 0 -6.82999449105042 LTS-039 chr18 9886054 10488094 602041 * c(APCDD1, TXNDC2, VAPA) 0.110570120369651 13 0.0531269645187296 0.674956580794109 263 0.321594986927093 3 3 0 -6.75937957815305 LTS-039 chr18 10488095 10488182 88 * APCDD1 NA 0 NA 1.012 1 NA NA NA NA NA LTS-039 chr18 10488183 10548393 60211 * c(APCDD1, NAPG) 0.0954357215754051 3 0.0324704994315353 1.15664536744817 59 0.426327838033331 4 4 0 -6.74645903981233 LTS-039 chr18 10548394 11825041 1276648 * c(GNAL, PIEZO2, NAPG) 0.175112881738768 9 0.0810077156819028 0.521954355731234 386 0.224599378753994 2 2 0 -6.75793503922975 LTS-039 chr18 11825042 11851387 26346 * GNAL NA 0 NA 1.478 1 NA NA NA NA NA LTS-039 chr18 11851388 11854199 2812 * c(GNAL, CHMP1B) NA 0 NA 1.23100889374779 52 0.305005889713922 6 NA NA -5.76441564283627 LTS-039 chr18 11854200 13042374 1188175 * c(PRELID3A, AFG3L2, CIDEA, GNAL, ANKRD62, IMPA2, C18orf61, CEP192, SPIRE1, PSMG2, CHMP1B, PTPN2, MPPE1, CEP76, SEH1L, TUBB6) 0.143647944279851 31 0.0757035531331869 0.680984286294826 1104 0.854803563236866 3 3 0 -6.79547020554393 LTS-039 chr18 13042375 13048853 6479 * CEP192 NA 0 NA 0.358 1 NA NA NA NA NA LTS-039 chr18 13048854 14803674 1754821 * c(LDLRAD4-AS1, MIR4526, MIR5190, FAM210A, ZNF519, CYP4F35P, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, CEP192, LDLRAD4, RNMT) 0.151938940524403 21 0.105965088590535 0.524761270677265 658 0.272446436510265 2 2 0 -6.73840334955516 LTS-039 chr18 14803675 14828267 24593 * ANKRD30B NA 0 NA 3.273 1 NA NA NA NA NA LTS-039 chr18 14828268 15004191 175924 * c(MIR3156-2, ANKRD30B) 0.297264609398717 10 0.167958328165054 0.952301312215764 76 0.606293664009071 4 3 1 -6.73427192506067 LTS-039 chr18 15004192 15006193 2002 * character(0) NA 0 NA 0.786280844341124 27 0.354332083039661 3 NA NA -5.76450630779565 LTS-039 chr18 18529727 18535130 5404 * ROCK1 NA 0 NA 0.306610814059071 56 0.120750078648034 1 NA NA -5.76835604896644 LTS-039 chr18 18535131 19100717 565587 * c(ROCK1, GREB1L) 0.317 1 NA 0.734587768221217 335 0.288567824765128 3 3 0 -5.76865399837546 LTS-039 chr18 19100718 20513374 1412657 * c(GATA6-AS1, MIR320C1, MIR4741, ESCO1, ABHD3, GATA6, MIR1-2, MIR133A1, MIB1, RBBP8, CTAGE1, SNRPD1, GREB1L) 0.300222611996792 2 0.0721248916810278 0.743125449375699 542 0.288653134311421 4 3 1 -7.05414647286494 LTS-039 chr18 20513375 20513414 40 * c(MIR4741, RBBP8) NA 0 NA 1.356 1 NA NA NA NA NA LTS-039 chr18 20513415 21109324 595910 * c(C18orf8, NPC1, RBBP8, TMEM241, RIOK3, CABLES1) 0.320936036672693 6 0.0640294203211826 1.07366215305241 449 0.536688544640981 7 5 2 -6.84931236093258 LTS-039 chr18 21109325 21109514 190 * c(C18orf8, NPC1) NA 0 NA 0.808 1 NA NA NA NA NA LTS-039 chr18 21109515 23748652 2639138 * c(MIR320C2, OSBPL1A, TTC39C, PSMA8, ANKRD29, ZNF521, CABYR, C18orf8, LAMA3, NPC1, IMPACT, HRH4, SS18, LOC729950) 0.360177929259364 25 0.10358938169523 0.820890109351464 1444 0.37103167371164 3 2 1 -6.96728434927294 LTS-039 chr18 23748653 23748855 203 * PSMA8 NA 0 NA 0.106 1 NA NA NA NA NA LTS-039 chr18 23748856 23759049 10194 * PSMA8 NA 0 NA 0.349907451198531 39 0.271124202780448 1 NA NA -5.76441024931534 LTS-039 chr18 23759050 23772280 13231 * PSMA8 NA 0 NA 0.606 1 NA NA NA NA NA LTS-039 chr18 23772281 23970054 197774 * c(PSMA8, TAF4B) 0.367842892500326 5 0.0633427186028513 0.826371179363903 104 0.20779770207776 3 2 1 -6.79586482502472 LTS-039 chr18 23970055 24034789 64735 * TAF4B NA 0 NA 1.34 1 NA NA NA NA NA LTS-039 chr18 24034790 24128203 93414 * KCTD1 NA 0 NA 1.60954277022284 73 0.503531849856983 8 NA NA -5.76441152754922 LTS-039 chr18 24128204 24180904 52701 * KCTD1 NA 0 NA 0.47 1 NA NA NA NA NA LTS-039 chr18 24180905 25531378 1350474 * c(CDH2, AQP4-AS1, KCTD1, AQP4, PCAT18, CHST9) 0.120602853564191 3 0.196876441793662 0.851551911485559 179 0.50706843419986 4 4 0 -6.74960867911891 LTS-039 chr18 25531379 32723033 7191655 * c(CDH2, MIR302F, DSG2-AS1, MAPRE2, SLC25A52, DSG4, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, TRAPPC8, CCDC178, MEP1B, WBP11P1, RNF138, RNF125, KLHL14, GAREM1, TTR, ASXL3, NOL4, B4GALT6) 0.342344311339759 38 0.117553562138927 0.624245404771767 2598 0.312179783453034 3 2 1 -7.44130967569563 LTS-039 chr18 32723034 32723075 42 * MAPRE2 NA 0 NA 1.46 1 NA NA NA NA NA LTS-039 chr18 32723076 34092510 1369435 * c(ZSCAN30, MIR3975, ZNF271P, MAPRE2, INO80C, ZNF396, SLC39A6, GALNT1, MIR187, MOCOS, RPRD1A, ELP2, ZNF24, FHOD3, C18orf21, ZNF397) 0.368579311564602 15 0.0681645767522217 0.907558405647385 1184 0.889599089698298 3 2 1 -6.79492271259711 LTS-039 chr18 34092511 43246093 9153583 * c(MIR4319, MIR4318, MIR5583-2, MIR5583-1, TPGS2, SETBP1, LINC00907, PIK3C3, CELF4, KIAA1328, RIT2, KC6, MIR924HG, SYT4, FHOD3, SLC14A2) 0.366042338928687 11 0.1333662762334 0.663225296708594 1041 0.257572508245 3 2 1 -7.11347611410353 LTS-039 chr18 43246094 43914347 668254 * c(HAUS1, C18orf25, SIGLEC15, RNF165, ATP5A1, EPG5, SLC14A1, SLC14A2, PSTPIP2) 0.239708911327312 4 0.15207536508806 0.84000510457686 823 0.403304459892179 4 3 1 -6.82741186743979 LTS-039 chr18 43914348 44013086 98739 * RNF165 NA 0 NA 0.591 1 NA NA NA NA NA LTS-039 chr18 44013087 44337079 323993 * c(LOXHD1, ST8SIA5, RNF165) 0.355986473195866 4 0.0745229271208979 0.517526529207267 400 0.196995653743896 3 2 1 -7.22568633570183 LTS-039 chr18 44337080 44771986 434907 * c(TCEB3CL2, TCEB3C, IER3IP1, TCEB3B, SKOR2, KATNAL2, HDHD2, PIAS2) 0.304674267902556 9 0.139254962010136 0.739125515145947 360 0.36146805019999 4 3 1 -6.80413251854379 LTS-039 chr18 44771987 44772873 887 * SKOR2 NA 0 NA 0.41 1 NA NA NA NA NA LTS-039 chr18 44772874 45358095 585222 * SKOR2 NA 0 NA 0.421346019119635 68 0.12785092353181 1 NA NA -6.41950224273883 LTS-039 chr18 45358096 45358109 14 * character(0) 0.403 1 NA 0.908 1 NA NA NA NA NA LTS-039 chr18 45358110 47013801 1655692 * c(MIR1539, RPL17-C18orf32, MIR4743, MIR4744, ZBTB7C, SMAD2, SMAD7, C18orf32, DYM, CTIF) 0.324285769023559 8 0.0487522893235355 0.993766996869026 678 0.468835468417476 4 3 1 -6.9607163166524 LTS-039 chr18 47013802 47091734 77933 * c(SNORD58C, RPL17-C18orf32, SNORD58B, SNORD58A, RPL17, LIPG) 0.389 1 NA 2.25560130450565 39 0.863530405448241 12 12 0 -5.76448603337623 LTS-039 chr18 47091735 47091833 99 * LIPG NA 0 NA 0.997 1 NA NA NA NA NA LTS-039 chr18 47091834 47803484 711651 * c(MIR4320, ACAA2, CFAP53, MBD1, MYO5B, SCARNA17, LIPG) 0.363468543854035 4 0.0573120115391762 0.804169486979248 476 0.338925097957723 3 2 1 -6.79926026659798 LTS-039 chr18 47803485 47814671 11187 * c(CXXC1, MBD1) NA 0 NA 1.30842067165292 107 0.372877879088861 6 NA NA -5.764501712326 LTS-039 chr18 47814672 47902104 87433 * c(SKA1, CXXC1) NA 0 NA 0.959 1 NA NA NA NA NA LTS-039 chr18 47902105 48723426 821322 * c(SKA1, SMAD4, ME2, MEX3C, ELAC1, MAPK4, MRO) 0.302855063696414 17 0.158009679524798 0.779639542921731 679 0.466900352314591 4 3 1 -6.77421334873061 LTS-039 chr18 48723427 48723439 13 * MEX3C 0.41 1 NA 0.409 1 NA NA NA NA NA LTS-039 chr18 48723440 55226494 6503055 * c(LINC01630, LINC01539, MIR4529, LINC-ROR, POLI, STARD6, C18orf54, DCC, FECH, WDR7, DYNAP, BOD1L2, ST8SIA3, MEX3C, RAB27B, SNORA37, TCF4, CCDC68, MBD2, TXNL1, ONECUT2) 0.355197808647592 25 0.101384384070395 0.653021679041169 1892 0.299627498389818 3 2 1 -7.04925149481277 LTS-039 chr18 55226495 55230091 3597 * FECH NA 0 NA 0.798 1 NA NA NA NA NA LTS-039 chr18 55230092 60647643 5417552 * c(LOC100505549, MIR3591, LINC01544, MALT1, ALPK2, CCBE1, RNF152, FECH, PHLPP1, NEDD4L, PIGN, CDH20, GRP, RAX, CPLX4, OACYLP, LMAN1, MIR122, MC4R, NARS, ATP8B1, PMAIP1, ZCCHC2, ZNF532, KIAA1468, TNFRSF11A, SEC11C) 0.36769512117098 69 0.0721266735212992 0.828250617244143 2484 0.610723126126186 3 2 1 -6.92998920194583 LTS-039 chr18 60647644 60790607 142964 * c(PHLPP1, BCL2) NA 0 NA 2.139 1 NA NA NA NA NA LTS-039 chr18 60790608 61056818 266211 * c(KDSR, BCL2, VPS4B) 0.327336717944196 7 0.0240237977252319 1.19273407065984 297 0.492076323481285 10 7 3 -7.00510004172452 LTS-039 chr18 61056819 71807614 10750796 * c(CDH7, LINC01541, LOC100505817, MIR5011, CD226, CBLN2, FBXO15, DOK6, LINC00305, RTTN, HMSD, LOC284294, CDH19, LINC01538, LOC400655, SERPINB2, SERPINB5, SERPINB8, SERPINB10, SERPINB13, TMX3, SERPINB3, SERPINB4, LOC643542, CCDC102B, NETO1, SERPINB7, SERPINB12, SERPINB11, DSEL, SOCS6, VPS4B) 0.346254021076535 49 0.105080035094732 0.642609438510157 2158 0.389814973520188 3 2 1 -7.17464983520808 LTS-039 chr18 71807615 71814920 7306 * FBXO15 NA 0 NA 2.07 1 NA NA NA NA NA LTS-039 chr18 71814921 71990123 175203 * c(CYB5A, FBXO15, TIMM21, C18orf63) 0.403760781700707 2 0.0551543289325507 1.16152860044133 101 0.573689220210855 5 3 2 -6.73723263413241 LTS-039 chr18 71990124 71995180 5057 * C18orf63 NA 0 NA 0.914 1 NA NA NA NA NA LTS-039 chr18 71995181 72907244 912064 * c(FAM69C, LINC00909, ZNF407, CNDP2, C18orf63, CNDP1) 0.362839724081161 12 0.0533975229251831 0.791313807117216 446 0.410347079766541 3 2 1 -6.78421676580784 LTS-039 chr18 72907245 72921321 14077 * ZADH2 0.346 1 NA 1.33590887800514 154 0.506210705173671 6 6 0 -5.7645465993508 LTS-039 chr18 72921322 72997397 76076 * TSHZ1 NA 0 NA 0.371 1 NA NA NA NA NA LTS-039 chr18 72997398 74155283 1157886 * c(TSHZ1, SMIM21, LOC339298, ZNF516) 0.352342172528585 5 0.0609122319407194 0.767180908631938 306 0.335021319896467 3 2 1 -6.82484633189186 LTS-039 chr18 74155284 74207401 52118 * ZNF516 NA 0 NA 1.478 1 NA NA NA NA NA LTS-039 chr18 74207402 74536400 328999 * c(LOC100131655, LINC00908, C18orf65, ZNF236) NA 0 NA 1.62502009532107 56 0.415709816606941 8 NA NA -5.76446706579247 LTS-039 chr18 74536401 74817302 280902 * c(MBP, ZNF236) 0.378535579126829 10 0.0577942711501562 0.721232318647051 403 0.275015616374381 3 2 1 -6.74329142791387 LTS-039 chr18 74817303 74962517 145215 * c(GALR1, MBP) NA 0 NA 0.284 1 NA NA NA NA NA LTS-039 chr18 74962518 76757395 1794878 * c(GALR1, SALL3) NA 0 NA 0.37603696322306 111 0.216403570496203 1 NA NA -5.87766309806398 LTS-039 chr18 76757396 76829330 71935 * SALL3 NA 0 NA 1.526 1 NA NA NA NA NA LTS-039 chr18 76829331 77917479 1088149 * c(PARD6G-AS1, RBFADN, TXNL4A, ADNP2, KCNG2, ATP9B, HSBP1L1, NFATC1, RBFA, PQLC1, PARD6G, CTDP1) 0.377637820183826 27 0.0567737299308088 0.918012680216962 834 0.425817853312364 3 2 1 -6.96666044557879 LTS-039 chr18 77917480 78005362 87883 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.826463150231885 52 0.250407116476151 4 NA NA -5.76926295786761 LTS-039 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.137 1 NA 0.779697152934446 21 0.503815503835245 3 3 0 -5.76790677051947 LTS-039 chr19 282754 499376 216623 * c(C2CD4C, SHC2, ODF3L2, THEG, MIER2, MADCAM1, PLPP2) 0.15320061450757 10 0.0623588183196428 0.470106746318177 295 0.210840397111907 2 2 0 -6.78307336648465 LTS-039 chr19 499377 499753 377 * MADCAM1 NA 0 NA 0.693 1 NA NA NA NA NA LTS-039 chr19 499754 1014241 514488 * c(MED16, MIR3187, MIR4745, FSTL3, GRIN3B, MISP, CFD, ARID3A, ELANE, FGF22, GZMM, PRSS57, PALM, POLRMT, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, BSG, PLPPR3, MADCAM1, KISS1R, R3HDM4, TMEM259, TPGS1, CDC34) 0.138581520556562 54 0.0590792619230983 0.689917566918557 1188 0.34456197767038 3 3 0 -6.79759383150648 LTS-039 chr19 1014242 1242610 228369 * c(ABCA7, CNN2, SBNO2, ARHGAP45, CBARP, GPX4, ATP5D, POLR2E, STK11, TMEM259) 0.14037231569324 33 0.0384613146846637 0.792728085299791 757 0.384898599152177 3 3 0 -6.91609862797889 LTS-039 chr19 1242611 1274461 31851 * c(CIRBP, CIRBP-AS1, ATP5D, MIDN) 0.124877344574276 2 0.0254558441227157 1.29439474674777 97 0.564131840115984 11 10 1 -6.75114209120153 LTS-039 chr19 1274462 1275344 883 * character(0) NA 0 NA 0.725 1 NA NA NA NA NA LTS-039 chr19 1275345 1465333 189989 * c(APC2, C19orf25, EFNA2, GAMT, DAZAP1, NDUFS7, C19orf24, RPS15, MUM1) 0.125233608939696 12 0.0431203390103051 0.707249695569574 442 0.286518373418171 3 3 0 -6.74378251065664 LTS-039 chr19 1465334 1470176 4843 * c(APC2, C19orf25) NA 0 NA 0.385144949273852 91 0.124383574093501 1 NA NA -5.76609643412573 LTS-039 chr19 1470177 1474836 4660 * c(APC2, C19orf25) NA 0 NA 0.891 1 NA NA NA NA NA LTS-039 chr19 1474837 1650350 175514 * c(UQCR11, PLK5, C19orf25, ADAMTSL5, MEX3D, MBD3, PCSK4, TCF3, REEP6) 0.118015989105714 9 0.054011572833977 0.632651433065093 446 0.288227794619416 3 3 0 -6.75079755018077 LTS-039 chr19 1650351 1752389 102039 * TCF3 NA 0 NA 0.429 1 NA NA NA NA NA LTS-039 chr19 1752390 1835022 82633 * c(LOC100288123, MIR1909, ATP8B3, ONECUT3, REXO1) 0.156330991462741 10 0.0686637539835328 0.459967943631573 445 0.253503115978304 2 2 0 -6.7505823238328 LTS-039 chr19 1835023 1848238 13216 * REXO1 NA 0 NA 0.988 1 NA NA NA NA NA LTS-039 chr19 1848239 1912011 63773 * c(SCAMP4, ADAT3, REXO1, ABHD17A, KLF16) 0.158657391705056 2 0.0268700576850888 1.15103991689454 51 0.597092621317139 8 7 1 -6.77385484751207 LTS-039 chr19 1912012 1912113 102 * c(SCAMP4, ADAT3) NA 0 NA 0.538 1 NA NA NA NA NA LTS-039 chr19 1912114 2425306 513193 * c(MIR1227, MIR4321, IZUMO4, SCAMP4, ADAT3, JSRP1, MOB3A, CSNK1G2, CSNK1G2-AS1, AMH, MKNK2, TMPRSS9, C19orf35, OAZ1, LSM7, PLEKHJ1, BTBD2, SPPL2B, LINGO3, SF3A2, DOT1L, AP3D1) 0.174906702814795 20 0.0704094042761783 0.629895398671117 1234 0.291510659750987 2 2 0 -6.86393292548499 LTS-039 chr19 2425307 2576204 150898 * c(TIMM13, GNG7, TMPRSS9, GADD45B, LMNB2) 0.152689271091769 6 0.0620053761110008 0.960767636853697 196 0.499031508701738 8 7 1 -6.85103633411516 LTS-039 chr19 2576205 2642750 66546 * GNG7 NA 0 NA 0.485 1 NA NA NA NA NA LTS-039 chr19 2642751 2850795 208045 * c(ZNF554, DIRAS1, ZNF555, GNG7, SLC39A3, SGTA, THOP1) 0.201066168381653 5 0.0828009661779378 0.502353309999987 240 0.171640350652479 2 2 0 -6.88947473860265 LTS-039 chr19 2850796 2851484 689 * ZNF555 NA 0 NA 0.618 1 NA NA NA NA NA LTS-039 chr19 2851485 3578291 726807 * c(C19orf71, HMG20B, ZNF57, MFSD12, ZNF555, AES, GNA11, GNA15, SMIM24, NFIC, FZR1, NCLN, ZNF77, CELF5, TLE2, TLE6, ZNF556, DOHH, S1PR4) 0.107495368397036 25 0.05593752467411 0.718731351829713 930 1.91688892228132 3 3 0 -6.76040346614585 LTS-039 chr19 3578292 3578490 199 * HMG20B NA 0 NA 0.286 1 NA NA NA NA NA LTS-039 chr19 3578491 3965016 386526 * c(HMG20B, MRPL54, GIPC3, DAPK3, ZFR2, PIP5K1C, TJP3, NMRK2, CACTIN-AS1, MATK, CACTIN, TBXA2R, MIR637, RAX2, ATCAY, APBA3) 0.128673914784721 15 0.0765748933118048 0.524292373780399 908 0.19365091282464 2 2 0 -6.83313659459076 LTS-039 chr19 3965017 3969547 4531 * DAPK3 NA 0 NA 1.016 1 NA NA NA NA NA LTS-039 chr19 3969548 4013325 43778 * c(DAPK3, EEF2, SNORD37, PIAS4) NA 0 NA 0.974948680200199 101 0.237217238867334 4 NA NA -5.76812451396434 LTS-039 chr19 4013326 4023929 10604 * PIAS4 NA 0 NA 0.468 1 NA NA NA NA NA LTS-039 chr19 4023930 4308090 284161 * c(EBI3, TMIGD2, ANKRD24, ZBTB7A, SIRT6, PIAS4, CCDC94, MAP2K2, SHD, FSD1, CREB3L3) 0.161535568900686 6 0.0577837924219817 0.509081845482824 558 0.253748489108141 2 2 0 -6.73803035799646 LTS-039 chr19 4308091 4310207 2117 * FSD1 NA 0 NA 0.728 1 NA NA NA NA NA LTS-039 chr19 4310208 4488922 178715 * c(CHAF1A, MIR4746, STAP2, SH3GL1, FSD1, UBXN6, HDGFRP2, MPND) 0.106605698667298 11 0.0566106318315176 0.673369627111043 378 0.319371275904995 3 3 0 -6.76699137411768 LTS-039 chr19 4488923 4491550 2628 * HDGFRP2 NA 0 NA 0.455 1 NA NA NA NA NA LTS-039 chr19 4491551 4523899 32349 * c(PLIN5, PLIN4, HDGFRP2) 0.327318868167656 6 0.160735082252341 0.431725705188249 196 0.190559920790879 3 2 1 -6.90762324217788 LTS-039 chr19 4523900 4911011 387112 * c(DPP9-AS1, PLIN3, SEMA6B, LRG1, TNFAIP8L1, TICAM1, MIR7-3HG, UHRF1, MIR7-3, PLIN5, FEM1A, MYDGF, ARRDC5, DPP9) 0.149195147735339 6 0.130285455826811 0.741640299009921 514 0.324951025101611 3 3 0 -6.76795293701707 LTS-039 chr19 4911012 4929159 18148 * UHRF1 NA 0 NA 0.512 1 NA NA NA NA NA LTS-039 chr19 4929160 5592983 663824 * c(MIR4747, ZNRF4, KDM4B, TINCR, UHRF1, PTPRS, SAFB2) 0.15047406633832 16 0.0584376804810047 0.531950525021988 491 0.20553638389375 2 2 0 -6.74919185278371 LTS-039 chr19 5592984 5593921 938 * SAFB2 NA 0 NA 1.113 1 NA NA NA NA NA LTS-039 chr19 5593922 6002919 408998 * c(LOC100128568, C19orf70, NDUFA11, PRR22, FUT3, FUT5, FUT6, CATSPERD, RPL36, HSD11B1L, VMAC, NRTN, DUS3L, RFX2, SAFB, CAPS, RANBP3, LONP1, SAFB2) 0.128216523620244 19 0.0892523854252286 0.775733904966046 902 0.546691930311518 3 3 0 -6.74496647266273 LTS-039 chr19 6002920 6004216 1297 * c(LOC100128568, RFX2) NA 0 NA 0.365 1 NA NA NA NA NA LTS-039 chr19 6004217 6714462 710246 * c(LOC100128568, MIR3940, TUBB4A, ACER1, SLC25A41, GTF2F1, MLLT1, PSPN, RFX2, C3, SLC25A23, DENND1C, ACSBG2, CLPP, ALKBH7, KHSRP, TNFSF14, TNFSF9, CRB3, CD70) 0.143113325825941 35 0.0609306948904403 0.574439723268205 1022 0.293707383062423 2 2 0 -6.80981480858288 LTS-039 chr19 6714463 6718091 3629 * C3 NA 0 NA 1.034 1 NA NA NA NA NA LTS-039 chr19 6718092 6753505 35414 * c(SH2D3A, GPR108, C3, TRIP10) 0.153863593485322 5 0.0555562777730834 0.976006495511907 179 0.382573479152995 8 7 1 -6.79156965512592 LTS-039 chr19 6753506 7542158 788653 * c(LOC100128573, SH2D3A, MBD3L2, ADGRE1, ARHGEF18, MBD3L5, ADGRE4P, INSR, FLJ25758, MBD3L4, MBD3L3, VAV1, ZNF557, PEX11G) 0.152769939780932 26 0.0784837856845897 0.526070410852042 740 0.234735079337852 2 2 0 -6.73889210716078 LTS-039 chr19 7542159 7747766 205608 * c(PET100, PNPLA6, TRAPPC5, PCP2, ZNF358, MCEMP1, C19orf45, RETN, XAB2, MCOLN1, CAMSAP3, STXBP2, PEX11G) 0.130334585881075 24 0.0510821305151911 0.866197684300201 780 0.404951675240974 3 3 0 -6.78913978397044 LTS-039 chr19 7747767 7754021 6255 * FCER2 NA 0 NA 0.512 1 NA NA NA NA NA LTS-039 chr19 7754022 7911629 157608 * c(CLEC4M, EVI5L, FCER2, CD209, CLEC4G, CLEC4GP1) 0.214095832358913 2 0.0565685424949238 0.506070243316395 159 0.173307507277256 2 2 0 -7.24297368129754 LTS-039 chr19 7911630 7912630 1001 * EVI5L NA 0 NA 1.17 1 NA NA NA NA NA LTS-039 chr19 7912631 8028419 115789 * c(TGFBR3L, TIMM44, EVI5L, ELAVL1, LYPLA2P2, CTXN1, MAP2K7, SNAPC2, LRRC8E, PRR36) 0.0697079996042053 4 0.0301606808057555 1.03842669037049 490 0.406603534531153 6 6 0 -6.75001971903264 LTS-039 chr19 8028420 8564687 536268 * c(RAB11B-AS1, MIR4999, ELAVL1, KANK3, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, RPS28, CCL25, CERS4, PRAM1, FBN3, RAB11B) 0.120397387509934 25 0.0520913300527705 0.658859332436194 853 0.305435609813333 3 3 0 -6.75334684850927 LTS-039 chr19 8564688 8567406 2719 * PRAM1 NA 0 NA 1.123 1 NA NA NA NA NA LTS-039 chr19 8567407 8592406 25000 * c(MYO1F, PRAM1, ZNF414) NA 0 NA 1.01354041053261 87 0.382199064056447 5 NA NA -5.76473501854575 LTS-039 chr19 8592407 8595093 2687 * MYO1F NA 0 NA 0.632 1 NA NA NA NA NA LTS-039 chr19 8595094 8657014 61921 * c(MYO1F, ADAMTS10) 0.169 1 NA 0.487876842386323 160 0.15076669038367 2 2 0 -5.77600155834384 LTS-039 chr19 8657015 8657638 624 * ADAMTS10 NA 0 NA 0.349 1 NA NA NA NA NA LTS-039 chr19 8657639 8973999 316361 * c(ZNF558, ACTL9, OR2Z1, ADAMTS10, MBD3L1, MUC16) 0.145094514339659 4 0.0914890703854837 0.345739628583478 208 0.192814708219279 1 1 0 -7.34666104722162 LTS-039 chr19 8974000 8995674 21675 * MUC16 0.429 1 NA 0.358044497776487 61 0.12653569443921 1 1 0 -5.76479661850523 LTS-039 chr19 8995675 9026318 30644 * MUC16 0.325215418585155 18 0.108288904916915 0.347533216232793 232 0.333487083486327 4 3 1 -6.91521937137914 LTS-039 chr19 9026319 9061250 34932 * MUC16 0 1 NA 0.297839796831411 244 0.154045345361176 1 1 0 -5.78758161666676 LTS-039 chr19 9061251 9362408 301158 * c(OR7D4, OR7G1, OR1M1, OR7D2, OR7E24, OR7G2, OR7G3, ZNF317, MUC16) 0.203939660443041 12 0.0623134792558536 0.330448356465607 787 0.14553259848426 1 1 0 -6.9831256740879 LTS-039 chr19 9362409 9362642 234 * OR7E24 NA 0 NA 0.477 1 NA NA NA NA NA LTS-039 chr19 9362643 9958765 596123 * c(ZNF559-ZNF177, ZNF266, ZNF560, ZNF846, OR7E24, ZNF561-AS1, ZNF699, PIN1, ZNF562, FBXL12, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561) 0.134379394279656 8 0.0555798974450295 0.568833083390186 651 0.277624075815711 2 2 0 -6.88066591370921 LTS-039 chr19 9958766 9958771 6 * PIN1 NA 0 NA 0.369 1 NA NA NA NA NA LTS-039 chr19 9958772 10169809 211038 * c(C3P1, COL5A3, RDH8, PIN1, OLFM2) 0.16968480986038 20 0.0652721226864885 0.349803604537537 444 0.187761368925206 2 2 0 -7.31335737865614 LTS-039 chr19 10169810 10192345 22536 * C3P1 0 1 NA 1.814 1 NA NA NA NA NA LTS-039 chr19 10192346 11364502 1172157 * c(SNORD105B, ZGLP1, MIR1181, MIR1238, MIR4322, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CDC37, FDX1L, RAVER1, ILF3-AS1, SPC24, DNM2, DNMT1, C19orf38, KANK2, ICAM1, ICAM3, ICAM4, ILF3, LDLR, MIR199A1, P2RY11, MRPL4, PDE4A, S1PR5, C19orf66, ANGPTL8, PPAN, SLC44A2, DOCK6, KRI1, SMARCA4, SNORD105, PPAN-P2RY11, MIR638, ICAM5, TYK2, YIPF2, QTRT1, ANGPTL6, ATG4D, EIF3G, C19orf52, S1PR2, KEAP1) 0.142684579282061 60 0.0500183327972775 0.637542796314088 2896 0.311214397347589 3 3 0 -6.94527293425706 LTS-039 chr19 11364503 11373001 8499 * DOCK6 NA 0 NA 0.71 1 NA NA NA NA NA LTS-039 chr19 11373002 11553319 180318 * c(CCDC151, SWSAP1, CCDC159, EPOR, TSPAN16, TMEM205, PRKCSH, RGL3, DOCK6, PLPPR2, RAB3D) 0.128124133669068 4 0.077 0.778541718816781 455 0.291489705329229 3 3 0 -6.75098976981255 LTS-039 chr19 11553320 11556193 2874 * PRKCSH NA 0 NA 0.452 1 NA NA NA NA NA LTS-039 chr19 11556194 12137007 580814 * c(ZNF653, ZNF441, ZNF491, ZNF440, CNN1, ZNF433, ELAVL3, ZNF627, ZNF763, ZNF833P, ECSIT, ACP5, ZNF823, PRKCSH, ZNF69, ELOF1, ZNF700, ZNF439) 0.131863215429644 31 0.0482657295102984 0.555481434636914 859 0.336017361191578 2 2 0 -6.93755506778776 LTS-039 chr19 12137008 12137020 13 * ZNF433 0.136 1 NA 1.137 1 NA NA NA NA NA LTS-039 chr19 12137021 12154799 17779 * c(ZNF433, ZNF878) 0.404 1 NA 1.02912807862618 21 0.413726468184223 5 5 0 -5.76451482876334 LTS-039 chr19 12154800 12636748 481949 * c(ZNF625-ZNF20, ZNF443, ZNF563, ZNF564, ZNF709, ZNF844, ZNF788, ZNF44, ZNF878, ZNF20, ZNF136, ZNF442, ZNF799, ZNF625) 0.455537998960864 18 0.0343964297432883 1.0211034921309 933 0.461470954170011 4 2 2 -7.05557899860899 LTS-039 chr19 12636749 12986996 350248 * c(RNASEH2A, ZNF791, ZNF564, ZNF709, DHPS, DNASE2, MAST1, SNORD41, HOOK2, TNPO2, JUNB, MAN2B1, ASNA1, WDR83OS, BEST2, ZNF490, PRDX2, C19orf43, RTBDN, FBXW9, WDR83) 0.447262875269955 3 0.0829397371589759 1.3711164745693 1193 0.801759813658026 6 3 3 -6.75954577374675 LTS-039 chr19 12986997 13373728 386732 * c(KLF1, NACC1, DNASE2, DAND5, FARSA, SYCE2, GCDH, LYL1, NFIX, TRMT1, RAD23A, CACNA1A, CALR, STX10, GADD45GIP1, IER2) 0.35322522549844 6 0.168851907500824 1.79647502097275 707 1.0316222325537 9 6 3 -6.73353898892547 LTS-039 chr19 13373729 13386627 12899 * CACNA1A NA 0 NA 0.892 1 NA NA NA NA NA LTS-039 chr19 13386628 13862655 476028 * c(CACNA1A, CCDC130) 0.441475177679676 4 0.0853561167501583 0.90683500624233 144 0.324424048564087 4 2 2 -6.74335218941041 LTS-039 chr19 13862656 13996901 134246 * c(LOC284454, C19orf53, NANOS3, MIR181C, MIR181D, ZSWIM4, C19orf57, CCDC130, MRI1) 0.390779778828379 3 0.0249064917909635 1.59834933484853 270 0.721710751219815 8 5 3 -6.76831649073281 LTS-039 chr19 13996902 14000015 3114 * C19orf57 NA 0 NA 1.154 1 NA NA NA NA NA LTS-039 chr19 14000016 14167592 167577 * c(RLN3, PALM3, CC2D1A, RFX1, C19orf57, PODNL1, DCAF15, IL27RA) 0.447180624297159 7 0.0602542233256012 0.997987905630754 522 0.40366387659566 4 2 2 -6.78542507332377 LTS-039 chr19 14167593 14168059 467 * PALM3 NA 0 NA 1.939 1 NA NA NA NA NA LTS-039 chr19 14168060 14204594 36535 * c(MISP3, PALM3, PRKACA, C19orf67, SAMD1) 0.437 1 NA 1.84137142096812 150 0.741628874214961 9 9 0 -5.7644371426005 LTS-039 chr19 14204595 14208053 3459 * PRKACA NA 0 NA 1.207 1 NA NA NA NA NA LTS-039 chr19 14208054 14682914 474861 * c(LOC100507373, DDX39A, GIPC1, ADGRL1, DNAJB1, NDUFB7, PRKACA, ASF1B, PKN1, PTGER1, MIR639, TECR, ADGRE5) 0.450028309518664 12 0.0345344579786449 1.29393655125447 681 0.728954756018519 6 3 3 -6.9159852089449 LTS-039 chr19 14682915 14693832 10918 * character(0) NA 0 NA 0.504 1 NA NA NA NA NA LTS-039 chr19 14693833 15227331 533499 * c(ILVBL, OR1I1, CCDC105, CASP14, OR7A17, OR7C2, OR7A5, OR7C1, ADGRE2, CLEC17A, OR7A10, SLC1A6, ZNF333, ADGRE3, SYDE1) 0.396451218570726 21 0.05305904168718 0.695812463666147 748 0.326578679481797 3 2 1 -6.86807775329038 LTS-039 chr19 15227332 15227628 297 * ILVBL NA 0 NA 0.911 1 NA NA NA NA NA LTS-039 chr19 15227629 15582784 355156 * c(MIR1470, AKAP8, ILVBL, PGLYRP2, BRD4, AKAP8L, NOTCH3, WIZ, RASAL3, EPHX3) 0.423366220326598 11 0.0459855708594851 1.19038353488508 823 0.541481095190218 6 3 3 -6.75011815007039 LTS-039 chr19 15582785 15582863 79 * PGLYRP2 0.5 1 NA 0.555 1 NA NA NA NA NA LTS-039 chr19 15582864 16146800 563937 * c(CYP4F8, PGLYRP2, CYP4F22, LINC00661, OR10H4, LINC00905, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, CYP4F11, UCA1, CYP4F12, CYP4F2) 0.432946872555663 34 0.0458827460104741 0.612594392834158 576 0.257034781893931 2 1 1 -6.83790681314499 LTS-039 chr19 16146801 16178446 31646 * c(LINC00905, TPM4) NA 0 NA 2.069 1 NA NA NA NA NA LTS-039 chr19 16178447 17316245 1137799 * c(KLF2, CHERP, CIB3, CALR3, SIN3B, FAM32A, CPAMD8, NWD1, RAB8A, MYO9B, EPS15L1, TPM4, TMEM38A, SMIM7, SLC35E1, C19orf44, HSH2D, AP1M1, F2RL3, HAUS8, MED26) 0.425811918624725 57 0.0736793627567489 1.23657179886248 1710 0.553956511416349 6 3 3 -6.7360350157709 LTS-039 chr19 17316246 17316793 548 * MYO9B NA 0 NA 2.034 1 NA NA NA NA NA LTS-039 chr19 17316794 17728690 411897 * c(TMEM221, NXNL1, ANKLE1, FAM129C, NR2F6, UNC13A, PGLS, BABAM1, SLC27A1, MYO9B, USE1, ANO8, MRPL34, BST2, DDA1, ABHD8, OCEL1, COLGALT1, PLVAP, USHBP1, GTPBP3, MVB12A) 0.373123387485315 40 0.0804353379413774 1.63073540725879 1176 0.786503334036158 8 5 3 -6.74552667291161 LTS-039 chr19 17728691 17838475 109785 * c(UNC13A, MAP1S) 0.446383358637382 8 0.0424228290967426 0.849226990364859 272 0.328123321643924 4 2 2 -6.81544469840697 LTS-039 chr19 17838476 18337161 498686 * c(B3GNT3, IFI30, CCDC124, MAST3, FCHO1, SNORA68, ARRDC2, IL12RB1, INSL3, JAK3, KCNN1, PDE4C, PIK3R2, MAP1S, RAB3A, RPL18A, SLC5A5, MPV17L2) 0.424468767058828 18 0.111754984097302 1.31402805891424 1129 0.691674282195291 6 3 3 -6.73632193037559 LTS-039 chr19 18337162 18343766 6605 * PDE4C NA 0 NA 0.624 1 NA NA NA NA NA LTS-039 chr19 18343767 18380378 36612 * c(PDE4C, LOC729966, KIAA1683) 0.441276818288107 15 0.0483425278610873 0.798908293820788 134 0.229751731555705 4 2 2 -6.76666563901349 LTS-039 chr19 18380379 18391210 10832 * c(JUND, KIAA1683) NA 0 NA 1.333 1 NA NA NA NA NA LTS-039 chr19 18391211 18548790 157580 * c(MIR3188, MIR3189, LRRC25, SSBP4, LSM4, JUND, ISYNA1, PGPEP1, GDF15) 0.440258900614768 5 0.0496487663492257 2.03449822194385 252 0.853781689090925 10 5 5 -6.75532933719598 LTS-039 chr19 18548791 18555460 6670 * c(ISYNA1, ELL) NA 0 NA 1.568 1 NA NA NA NA NA LTS-039 chr19 18555461 19327957 772497 * c(MEF2B, SUGP2, CERS1, COPE, NR2C2AP, COMP, NCAN, CRTC1, FKBP8, TMEM59L, GDF1, SLC25A42, BORCS8-MEF2B, DDX49, TMEM161A, C19orf60, KLHL26, UPF1, BORCS8, UBA52, KXD1, ELL, RFXANK, CRLF1, ARMC6, HOMER3) 0.430162564921317 11 0.146650109258243 1.29680640478897 1335 0.504882137647777 6 3 3 -6.73521869452037 LTS-039 chr19 19327958 19329635 1678 * NCAN NA 0 NA 0.767 1 NA NA NA NA NA LTS-039 chr19 19329636 19413297 83662 * c(NCAN, HAPLN4, TM6SF2, SUGP1) NA 0 NA 0.710268286956947 239 0.2442912624583 3 NA NA -5.76441174799179 LTS-039 chr19 19413298 19414165 868 * SUGP1 NA 0 NA 1.676 1 NA NA NA NA NA LTS-039 chr19 19414166 19843798 429633 * c(CILP2, MAU2, YJEFN3, NDUFA13, GMIP, GATAD2A, ATP13A1, SUGP1, ZNF14, PBX4, TSSK6, LPAR2, ZNF101) 0.419999549751725 2 0.043840620433566 1.16576597136252 999 0.556304050992853 7 4 3 -6.76834026046315 LTS-039 chr19 19843799 19868895 25097 * c(LINC00663, ZNF14) NA 0 NA 0.515 1 NA NA NA NA NA LTS-039 chr19 19868896 22157302 2288407 * c(ZNF737, MIR1270, ZNF738, ZNF714, ZNF100, ZNF431, ZNF626, LINC00663, ZNF493, ZNF429, LINC00664, ZNF506, ZNF253, LOC641367, ZNF826P, ZNF708, ZNF43, ZNF85, ZNF90, ZNF208, ZNF430, ZNF93, ZNF486, ZNF682) 0.420824868657556 32 0.0483328513138738 0.921754544429671 808 0.43376423816167 4 2 2 -6.76594330182986 LTS-039 chr19 22157303 22157332 30 * ZNF208 NA 0 NA 0.67 1 NA NA NA NA NA LTS-039 chr19 22157333 23317052 1159720 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF676, ZNF728, GOLGA2P9, ZNF492, ZNF99, ZNF208) 0.4090858084924 8 0.0833451301173962 0.657111209699022 287 0.238234550557656 3 2 1 -6.93082559819787 LTS-039 chr19 23317053 23318827 1775 * ZNF730 NA 0 NA 0.894 1 NA NA NA NA NA LTS-039 chr19 23318828 23545004 226177 * c(ZNF730, ZNF724, ZNF91) 0.454788508967193 2 0.0318198051533946 1.06627627316264 82 0.334739113361213 6 3 3 -7.08996912139033 LTS-039 chr19 23545005 24345121 800117 * c(HAVCR1P1, ZNF681, ZNF675, RPSAP58, ZNF726, ZNF91, ZNF254) NA 0 NA 0.982309512079462 327 0.644265020801085 5 NA NA -5.77326207106411 LTS-039 chr19 28247625 29567134 1319510 * c(LINC01532, LINC00906, LINC00662) 0.107 1 NA 1.05818387083988 5 0.984795054821053 5 5 0 -5.76455121413549 LTS-039 chr19 29567135 30054881 487747 * c(LOC284395, VSTM2B, UQCRFS1) NA 0 NA 4.03213701744041 51 2.32667291785216 20 NA NA -5.76463702693036 LTS-039 chr19 30054882 30097185 42304 * c(POP4, VSTM2B) NA 0 NA 8.538 1 NA NA NA NA NA LTS-039 chr19 30097186 30506560 409375 * c(POP4, PLEKHF1, C19orf12, URI1, CCNE1) 0.085124791852549 4 0.032644550336414 5.34372089348543 269 2.26121712649107 16 15 1 -6.74968738159375 LTS-039 chr19 30506561 30528758 22198 * URI1 NA 0 NA 3.296 1 NA NA NA NA NA LTS-039 chr19 30528759 32131065 1602307 * c(THEG5, TSHZ3, NA, ZNF536) 0.127264955930705 2 0.0685893577750951 2.15969209205349 229 1.373549690098 11 10 1 -6.73512076632208 LTS-039 chr19 32843747 33078139 234393 * c(DPY19L3, ZNF507, LOC400684, PDCD5) 0.140856498322294 4 0.0480936586256442 0.904947906912991 207 0.797762261786585 9 8 1 -6.84796202658834 LTS-039 chr19 33078140 33089025 10886 * c(ANKRD27, PDCD5) NA 0 NA 0.44 1 NA NA NA NA NA LTS-039 chr19 33089026 33417951 328926 * c(SLC7A9, RGS9BP, NUDT19, ANKRD27, CEP89, TDRD12) 0.10759237227317 16 0.0772553126544274 0.55607836649616 434 0.330566194627252 3 3 0 -6.854626695816 LTS-039 chr19 33417952 33422323 4372 * CEP89 NA 0 NA 0.956 1 NA NA NA NA NA LTS-039 chr19 33422324 33693850 271527 * c(WDR88, LRP3, GPATCH1, CEP89, RHPN2, FAAP24) 0.174767755913199 14 0.113310814397129 0.866495830116726 329 0.480841943093849 6 5 1 -6.89109445309366 LTS-039 chr19 33693851 35557136 1863286 * c(HPN-AS1, SCGB2B3P, UBA2, LINC00904, CEBPA, CEBPG, WTIP, ZNF792, ZNF599, LSM14A, GPI, SCGB2B2, HPN, ZNF181, LOC400685, LRP3, PEPD, ZNF302, SLC7A10, GRAMD1A, SCN1B, SCGB1B2P, CHST8, KCTD15, CEBPA-AS1, PDCD2L, ZNF30, KIAA0355) 0.112688811466583 24 0.0718650985618495 0.61504090561055 1390 0.304999465340193 3 3 0 -6.9820540097929 LTS-039 chr19 35557137 35802938 245802 * c(HPN-AS1, FAM187B, LGI4, HPN, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, HAMP, USF2) 0.069475708907654 29 0.0292637067375222 1.1140895664358 502 0.502116666417934 6 6 0 -6.74287887675313 LTS-039 chr19 35802939 35803095 157 * MAG NA 0 NA 0.445 1 NA NA NA NA NA LTS-039 chr19 35803096 35850903 47808 * c(MIR5196, FFAR1, FFAR3, MAG, CD22) 0.118 1 NA 0.582337347005978 143 0.211494888486238 2 2 0 -5.76991475317489 LTS-039 chr19 35850904 35863609 12706 * FFAR3 NA 0 NA 0.188165118290076 50 0.109850780049807 0 NA NA -5.77102631026801 LTS-039 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.442 1 NA NA NA NA NA LTS-039 chr19 35863628 36229293 365666 * c(LINC01531, TMEM147-AS1, UPK1A-AS1, TMEM147, UPK1A, COX6B1, ETV2, HAUS5, GAPDHS, ZBTB32, FFAR2, SBSN, KRTDAP, ATP4A, RBM42, DMKN, KMT2B) 0.130738166984764 22 0.113167548084219 0.747361390694508 942 0.321310335174528 3 3 0 -6.74418175734615 LTS-039 chr19 36229294 36268582 39289 * c(ARHGAP33, HSPB6, PROSER3, U2AF1L4, PSENEN, LIN37, IGFLR1, KMT2B) 0.109944967684898 6 0.0477828421088574 1.217940118095 228 0.500915207530041 12 11 1 -6.7762939582151 LTS-039 chr19 36268583 36335244 66662 * c(ARHGAP33, NPHS1, PRODH2) 0.150276197692627 2 0.0735391052434009 0.526137422521896 246 0.188695832156332 2 2 0 -6.74372784721293 LTS-039 chr19 36335245 36602779 267535 * c(HCST, SYNE4, THAP8, CLIP3, WDR62, APLP1, NPHS1, SDHAF1, OVOL3, TYROBP, LRFN3, KIRREL2, NFKBID, ALKBH6) 0 3 0 0.730315464447232 792 0.402210360956937 0 0 0 -Inf LTS-039 chr19 36602780 36603722 943 * OVOL3 NA 0 NA 1.792 1 NA NA NA NA NA LTS-039 chr19 36603723 36643791 40069 * c(TBCB, COX7A1, POLR2I, OVOL3, CAPNS1) NA 0 NA 1.03254075271122 143 0.383216265567125 5 NA NA -5.76464252375759 LTS-039 chr19 36643792 36673361 29570 * ZNF565 NA 0 NA 0.592 1 NA NA NA NA NA LTS-039 chr19 36673362 37642707 969346 * c(LOC100134317, LINC00665, ZNF420, ZNF565, ZNF567, ZNF585A, ZNF345, ZFP82, ZNF790-AS1, ZNF260, ZNF850, ZNF829, ZNF568, ZNF790, ZFP14, ZNF529, LOC644189, LOC728752, ZNF146, ZNF382, ZNF566, ZNF461) 0.118696713226318 16 0.0341699185444352 0.659658062091954 1140 0.279719901935228 3 3 0 -6.77519626759546 LTS-039 chr19 37642708 37681171 38464 * c(ZNF585A, ZNF585B) NA 0 NA 0.366789986249773 117 0.128096741274936 1 NA NA -5.76737779091384 LTS-039 chr19 37681172 37689831 8660 * ZNF585B NA 0 NA 0.749 1 NA NA NA NA NA LTS-039 chr19 37689832 38655582 965751 * c(ZNF571-AS1, LOC100631378, ZNF573, ZNF569, ZNF570, ZNF383, ZNF781, ZNF540, ZFP30, SIPA1L3, LOC284412, HKR1, ZNF793, ZNF571, LOC644554, WDR87, ZNF527, ZNF607, ZNF585B) 0.113256998071401 17 0.0766212514676613 0.678765399978728 1050 0.338012593279166 3 3 0 -6.74803445549141 LTS-039 chr19 38655583 38673107 17525 * SIPA1L3 NA 0 NA 1.225 1 NA NA NA NA NA LTS-039 chr19 38673108 38931575 258468 * c(SPINT2, RASGRP4, FAM98C, GGN, SIPA1L3, SPRED3, PSMD8, CATSPERG, RYR1, C19orf33, DPF1, YIF1B, KCNK6, PPP1R14A) 0.0848856125732576 7 0.0280823618596985 1.33942681347145 717 0.640663902769674 5 5 0 -6.77554649595255 LTS-039 chr19 38931576 38993696 62121 * RYR1 0.0127285509721627 3 0.0508068236886871 0.77821588557136 248 0.343287288909619 10 10 0 -7.20220004653237 LTS-039 chr19 38993697 38994872 1176 * RYR1 NA 0 NA 1.944 1 NA NA NA NA NA LTS-039 chr19 38994873 39379708 384836 * c(MAP4K1, RINL, CAPN12, ECH1, SIRT2, EIF3K, HNRNPL, LGALS4, LGALS7, RYR1, LGALS7B, ACTN4) 0.0510405403274827 24 0.0267248120612689 1.53125597506633 966 0.75372618096187 8 8 0 -6.73645311452681 LTS-039 chr19 39379709 39379770 62 * SIRT2 0.062 1 NA 0.119 1 NA NA NA NA NA LTS-039 chr19 39379771 39879227 499457 * c(IFNL4, PAK4, FBXO17, FBXO27, SIRT2, IFNL2, IFNL3, IFNL1, NCCRP1, SYCN, ACP7, NFKBIB, PAF1, SARS2, SAMD4B, LRFN1, MRPS12, CCER2, GMFG) 0.0425026223381791 5 0.00771362431027075 1.17387672610865 721 0.551308453663001 10 10 0 -6.99179667772871 LTS-039 chr19 39879228 39908781 29554 * c(MIR4530, PAF1, MED29, PLEKHG2, ZFP36) 0.06 1 NA 2.09715893946863 138 0.917153587957613 11 11 0 -5.76442573295477 LTS-039 chr19 39908782 39909359 578 * PLEKHG2 NA 0 NA 1.331 1 NA NA NA NA NA LTS-039 chr19 39909360 40030851 121492 * c(DLL3, EID2B, EID2, SELENOV, RPS16, PLEKHG2, SUPT5H, TIMM50) 0.0589010779689092 4 0.0358933605745315 1.20129445765042 474 0.593837137402035 7 7 0 -6.73954314570016 LTS-039 chr19 40030852 40276811 245960 * c(LOC100129935, CLC, LGALS16, LGALS13, LEUTX, LGALS17A, LGALS14) 0.0900382480305784 7 0.0248557744560399 0.761939665941238 130 0.282818633240967 4 4 0 -6.80513330607744 LTS-039 chr19 40276812 40316359 39548 * DYRK1B NA 0 NA 1.615 1 NA NA NA NA NA LTS-039 chr19 40316360 40337017 20658 * c(FBL, DYRK1B) NA 0 NA 1.83987273728522 95 0.547670556559175 9 NA NA -5.76443641279385 LTS-039 chr19 40337018 40354044 17027 * c(FBL, FCGBP) NA 0 NA 0.8 1 NA NA NA NA NA LTS-039 chr19 40354045 40389788 35744 * FCGBP NA 0 NA 0.973069856376719 91 0.607024858633301 4 NA NA -5.76485370781051 LTS-039 chr19 40389789 40391997 2209 * FCGBP NA 0 NA 0.031 1 NA NA NA NA NA LTS-039 chr19 40391998 40406047 14050 * FCGBP NA 0 NA 0.462276234382158 39 0.506415049568188 2 NA NA -5.76503779646013 LTS-039 chr19 40406048 40407945 1898 * FCGBP NA 0 NA 1.148 1 NA NA NA NA NA LTS-039 chr19 40407946 40875891 467946 * c(C19orf47, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, ZNF546, MAP3K10, PSMC4, MIR641, CNTD2, FCGBP) 0.117580834113962 3 0.0395769293065206 1.01365449255688 927 0.419842639659579 3 3 0 -6.92794847856193 LTS-039 chr19 40875892 40904722 28831 * c(HIPK4, PLD3, PRX) 0.087 1 NA 0.589166727390867 174 0.155410006268907 2 2 0 -5.77219889222408 LTS-039 chr19 40904723 40909637 4915 * PRX NA 0 NA 1.647 1 NA NA NA NA NA LTS-039 chr19 40909638 40996206 86569 * c(SERTAD3, SERTAD1, PRX, SPTBN4, BLVRB) 0.0840492762572412 4 0.0355387112878337 1.43478689988539 91 0.653832170144225 5 5 0 -6.75413635766624 LTS-039 chr19 40996207 40998793 2587 * SPTBN4 NA 0 NA 0.811 1 NA NA NA NA NA LTS-039 chr19 40998794 41071626 72833 * SPTBN4 0.0655762009612764 4 0.0672259870387437 0.724931161242858 181 0.348592465316426 5 5 0 -6.81242253628436 LTS-039 chr19 41071627 41072124 498 * SPTBN4 NA 0 NA 0.891 1 NA NA NA NA NA LTS-039 chr19 41072125 41324798 252674 * c(MIA-RAB4B, RAB4B-EGLN2, EGLN2, C19orf54, RAB4B, SPTBN4, SNRPA, COQ8B, ITPKC, MIA, LTBP4, NUMBL, SHKBP1) 0.0956997828659412 4 0.0163375844807813 1.06493347309019 727 0.478002410864556 4 4 0 -6.75421851853977 LTS-039 chr19 41324799 41327189 2391 * character(0) NA 0 NA 0.021 1 NA NA NA NA NA LTS-039 chr19 41327190 41765771 438582 * c(CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, CYP2G1P, CYP2S1, AXL) 0.0602611790374214 3 0.0496521231503078 0.704525346592434 538 0.37660255341243 4 4 0 -7.11920408115702 LTS-039 chr19 41765772 41770424 4653 * c(HNRNPUL1, AXL) NA 0 NA 2.138 1 NA NA NA NA NA LTS-039 chr19 41770425 41962394 191970 * c(ERICH4, PCAT19, HNRNPUL1, B3GNT8, ATP5SL, EXOSC5, BCKDHA, TMEM91, TGFB1, B9D2, CCDC97) 0.0656871402321646 2 0.0572756492761103 0.956139740275287 389 0.398016808572431 5 5 0 -6.77613056514349 LTS-039 chr19 41962395 42026804 64410 * PCAT19 NA 0 NA 0.549 1 NA NA NA NA NA LTS-039 chr19 42026805 42342254 315450 * c(CEACAM5, CEACAM3, CEACAM7, CEACAM4, LYPD4, CEACAM6, CEACAM21) 0.225564862103831 7 0.0754645927697537 0.428991167534475 312 0.139224394790829 1 1 0 -7.13919311554895 LTS-039 chr19 42342255 42342257 3 * LYPD4 NA 0 NA 0.564 1 NA NA NA NA NA LTS-039 chr19 42342258 42463499 121242 * c(RABAC1, LYPD4, RPS19, DMRTC2, ARHGEF1, CD79A) NA 0 NA 0.763525354949832 301 0.332141814699658 3 NA NA -5.76772475822294 LTS-039 chr19 42463500 42470694 7195 * RABAC1 NA 0 NA 0.405 1 NA NA NA NA NA LTS-039 chr19 42470695 42510141 39447 * c(GRIK5, ATP1A3) NA 0 NA 0.401173743594538 151 0.119469534295251 1 NA NA -5.79472497683837 LTS-039 chr19 42510142 42510749 608 * GRIK5 NA 0 NA 0.536 1 NA NA NA NA NA LTS-039 chr19 42510750 42734610 223861 * c(MIR4323, LOC100505622, ZNF526, DEDD2, GRIK5, GSK3A, POU2F2, ZNF574) 0 1 NA 0.646393971563523 378 0.315566988532721 3 3 0 -5.77671672408403 LTS-039 chr19 42734611 42734889 279 * GSK3A NA 0 NA 0.485 1 NA NA NA NA NA LTS-039 chr19 42734890 42793584 58695 * c(ERF, CIC, GSK3A) 0.173 1 NA 1.26729446645949 172 0.445079382628251 6 6 0 -5.76443413783511 LTS-039 chr19 42793585 42793918 334 * CIC NA 0 NA 0.609 1 NA NA NA NA NA LTS-039 chr19 42793919 43022978 229060 * c(LIPE-AS1, MEGF8, CIC, PRR19, TMEM145, CXCL17, LIPE, PAFAH1B3, CEACAM1, CNFN) 0.057 1 NA 0.732499954656328 711 0.323101132476828 3 3 0 -5.76555060439397 LTS-039 chr19 43022979 43772185 749207 * c(LOC100289650, LIPE-AS1, CEACAM8, LOC284344, PSG8, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, CEACAM1, PSG10P) 0.126589104596968 10 0.0265112135603869 0.45748763344954 239 0.25768282133705 2 2 0 -7.70927491541015 LTS-039 chr19 43772186 43780549 8364 * PSG9 NA 0 NA 1.562 1 NA NA NA NA NA LTS-039 chr19 43780550 44302718 522169 * c(SRRM5, IRGQ, ZNF428, CADM4, ETHE1, PRG1, LYPD3, ZNF575, LYPD5, KCNN4, PINLYP, PLAUR, SMG9, IRGC, CD177, PHLDB3, XRCC1, ZNF576, TEX101) 0.115113605896171 19 0.0999440779308624 0.943351276464211 840 0.479785331758817 4 4 0 -6.76081903046905 LTS-039 chr19 44302719 44302906 188 * LYPD5 NA 0 NA 0.486 1 NA NA NA NA NA LTS-039 chr19 44302907 45117067 814161 * c(LOC100379224, LOC100505715, ZNF234, CEACAM20, IGSF23, ZNF285, LYPD5, ZNF283, ZNF404, ZNF284, ZNF233, CEACAM22P, ZNF45, ZNF221, ZNF222, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, ZNF235) 0.132393277918572 39 0.0592806063008874 0.598891501369278 1145 0.273623218449601 3 3 0 -6.94837704166815 LTS-039 chr19 45117068 45117169 102 * IGSF23 NA 0 NA 1.041 1 NA NA NA NA NA LTS-039 chr19 45117170 45900308 783139 * c(APOC4-APOC2, MIR4531, TOMM40, PPP1R13L, CLASRP, CKM, CLPTM1, KLC3, IGSF23, ZNF296, ERCC2, CBLC, PPP1R37, NKPD1, APOC1, APOC1P1, APOC2, APOE, CEACAM16, BLOC1S3, BCAM, CEACAM19, MARK4, PVR, NECTIN2, RELB, BCL3, TRAPPC6A, GEMIN7, EXOC3L2) 0.121214978575535 39 0.05676180788178 0.819189114296998 1571 0.394618283673892 3 3 0 -6.7932353424274 LTS-039 chr19 45900309 45901172 864 * PPP1R13L NA 0 NA 1.203 1 NA NA NA NA NA LTS-039 chr19 45901173 47906477 2005305 * c(SNAR-E, EML2-AS1, MIR3191, MIR3190, MIR320E, MIR642B, PPP5D1, DACT3-AS1, SAE1, RNU6-66P, PPP1R13L, CD3EAP, AP2S1, PPM1N, DACT3, SIX5, IGFL2, DMPK, DMWD, ERCC1, ZC3H4, FBXO46, FOSB, EML2, INAFM1, PRKD2, CCDC9, IRF2BP1, GIPR, BBC3, C5AR2, GPR4, ARHGAP35, STRN4, FOXA3, MYPOP, NANOS2, IGFL1, BHMG1, IGFL3, MIR330, IGFL4, NOVA2, NPAS1, QPCTL, TMEM160, PNMAL1, PPP5C, MEIS3, PTGIR, PNMAL2, RTN2, HIF3A, NA NA NA NA NA NA NA NA NA LTS-039 SLC1A5, SNRPD2, MIR642A, C5AR1, CCDC61, VASP, MIR769, FKRP, OPA3, CALM3, RSPH6A, SYMPK, CCDC8, PGLYRP1, LOC93429, GNG8, DHX34) 0.0779018078498694 80 0.0406922515405948 0.987456270065785 3119 0.474206193461847 5 5 0 -6.76975588214325 LTS-039 NA NA NA NA LTS-039 chr19 47906478 48284585 378108 * c(NAPA-AS1, KPTN, GLTSCR2, GLTSCR1, EHD2, MEIS3, SELENOW, SLC8A2, SNORD23, ZNF541, NAPA) 0.111773153120861 10 0.0472821319316293 0.732088872930634 673 0.379662975756244 3 3 0 -6.75019009041854 LTS-039 chr19 48284586 48304501 19916 * c(TPRX1, SELENOW) NA 0 NA 0.534 1 NA NA NA NA NA LTS-039 chr19 48304502 48601544 297043 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-C3, CRX, TPRX1, CABP5, ELSPBP1, SULT2A1, PLA2G4C) 0.130171873706279 12 0.0678172119924156 0.501425529178381 357 0.615587815626653 3 3 0 -6.80486953198949 LTS-039 chr19 48601545 48602917 1373 * PLA2G4C NA 0 NA 0.861 1 NA NA NA NA NA LTS-039 chr19 48602918 48809708 206791 * c(CARD8-AS1, ZNF114, CARD8, LIG1, PLA2G4C, CCDC114) 0.109327538567743 20 0.0515512009151045 0.736495951525469 480 0.305897510673601 3 3 0 -6.75776794726891 LTS-039 chr19 48809709 48814824 5116 * CCDC114 NA 0 NA 1.025 1 NA NA NA NA NA LTS-039 chr19 48814825 49478056 663232 * c(KDELR1, LMTK3, NTN5, DBP, SPACA4, EMP3, SYNGR4, PPP1R15A, FTL, FUT1, FUT2, FGF21, DHDH, MAMSTR, IZUMO1, GRIN2D, GYS1, KCNJ14, NUCB1, HSD17B14, FAM83E, RASIP1, TMEM143, SPHK2, PLEKHA4, BAX, BCAT2, RPL18, SEC1P, SULT2B1, TULP2, CA11, GRWD1, CYTH2, CCDC114) 0.0732805571736672 30 0.0300417334241291 1.23490436441945 1711 0.602590786117456 6 6 0 -6.75270082771651 LTS-039 chr19 49478057 49481143 3087 * GYS1 NA 0 NA 0.759 1 NA NA NA NA NA LTS-039 chr19 49481144 49983898 502755 * c(SNAR-G1, SNAR-G2, MIR4324, GFY, LOC101059948, CGB3, RUVBL2, PTH2, CGB1, CGB2, ALDH16A1, CCDC155, FLT3LG, DKKL1, SLC6A16, GYS1, HRC, KCNA7, LHB, NTF4, TRPM4, PIH1D1, C19orf73, SLC17A7, LIN7B, SNRNP70, TEAD2, PPFIA3, CGB5, CGB7, CGB8, CD37) 0.0981388847070423 16 0.0595806176537303 1.01343348543506 1253 0.429121343874614 4 4 0 -6.76108596242124 LTS-039 chr19 49983899 49990738 6840 * FLT3LG NA 0 NA 2.176 1 NA NA NA NA NA LTS-039 chr19 49990739 50002807 12069 * c(FLT3LG, RPL13A, SNORD35A, SNORD34, SNORD33, SNORD32A, RPS11, SNORD35B) 0.045 1 NA 2.05873771667382 66 0.963596534768666 10 10 0 -5.76442373819932 LTS-039 chr19 50002808 50003921 1114 * RPS11 NA 0 NA 1.373 1 NA NA NA NA NA LTS-039 chr19 50003922 50342088 338167 * c(PTOV1-AS1, MIR5088, CPT1C, AP2A1, ADM5, FCGRT, PRMT1, IRF3, MIR150, NOSIP, PRRG2, RCN3, PRR12, SCAF1, TSKS, RRAS, FUZ, MED25, BCL2L12) 0.086349814556238 10 0.0461279621150652 1.07744773910906 1089 0.53087823081524 5 5 0 -6.74713178221692 LTS-039 chr19 50342089 50354013 11925 * c(PTOV1-AS1, PTOV1) NA 0 NA 1.963 1 NA NA NA NA NA LTS-039 chr19 50354014 50476405 122392 * c(PTOV1-AS1, MIR4749, MIR4750, MIR4751, PNKP, SIGLEC11, ATF5, NUP62, IL4I1, SIGLEC16, PTOV1, TBC1D17, AKT1S1) 0.0786959308959175 2 0.0332340187157677 1.74663806193622 533 0.669589439801863 5 5 0 -6.77196395604006 LTS-039 chr19 50476406 50482316 5911 * c(SIGLEC16, VRK3) NA 0 NA 0.847 1 NA NA NA NA NA LTS-039 chr19 50482317 50827364 345048 * c(SNAR-B2, SNAR-D, IZUMO2, ZNF473, KCNC3, LOC400710, VRK3, MYH14) 0.048859582732232 8 0.0222196823945412 0.897287382045566 467 0.435733092731111 7 7 0 -7.09330821008507 LTS-039 chr19 50827365 50831887 4523 * KCNC3 NA 0 NA 2.872 1 NA NA NA NA NA LTS-039 chr19 50831888 50885944 54057 * c(NAPSB, KCNC3, NR1H2, NAPSA) 0.0828100235479651 3 0.0888988188897918 1.33768216456853 127 0.586694631538559 5 5 0 -6.73858729473303 LTS-039 chr19 50885945 50902163 16219 * c(POLD1, NR1H2) NA 0 NA 0.504 1 NA NA NA NA NA LTS-039 chr19 50902164 50962313 60150 * c(MYBPC2, POLD1, SPIB) 0.132780705559121 7 0.03427757839977 0.641547519015698 271 0.264209089074848 3 3 0 -6.82769224225578 LTS-039 chr19 50962314 51017099 54786 * c(FAM71E1, JOSD2, EMC10, MYBPC2, ASPDH) 0.144649139109108 3 0.058 0.9657423890671 154 0.383658462720837 9 8 1 -6.81948362725103 LTS-039 chr19 51017100 51017668 569 * ASPDH NA 0 NA 0.485 1 NA NA NA NA NA LTS-039 chr19 51017669 51220230 202562 * c(SNAR-F, C19orf81, SHANK1, ASPDH, SYT3, LRRC4B) 0.148150729522999 4 0.0865678924313166 0.521935039742911 339 0.240282529210324 2 2 0 -6.74496760263475 LTS-039 chr19 51220231 51227163 6933 * CLEC11A NA 0 NA 0.765 1 NA NA NA NA NA LTS-039 chr19 51227164 51914353 687190 * c(KLK11, KLK8, CLDND2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, KLK3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, NKG7, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SNORD88A, SNORD88B, SNORD88C, C19orf48, SIGLEC10, CTU1, ACPT, CD33, KLK4) 0.0905883531115689 30 0.0472048604549861 0.752186498936374 1138 0.38978349149184 4 4 0 -6.81658289699961 LTS-039 chr19 51914354 52133720 219367 * c(LOC100129083, SIGLEC8, CEACAM18, LINC01530, ZNF175, SIGLEC5, SIGLEC10, SIGLEC12, SIGLEC6) 0.203576531820237 9 0.0771067081676066 0.463358780087972 494 0.208203908379115 2 2 0 -6.9737821404457 LTS-039 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.111 1 NA NA NA NA NA LTS-039 chr19 52146303 52208492 62190 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.136942380416363 2 0.0487903679018718 1.26398443579194 58 0.52984795870763 10 9 1 -6.76089518564469 LTS-039 chr19 52208493 52803676 595184 * c(ZNF480, ZNF836, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, PPP2R1A, ZNF350, ZNF649, MIR643, ZNF613, ZNF614, ZNF577, ZNF616, ZNF766, ZNF432) 0.125510732190543 21 0.0441865094689275 0.741985212804195 855 0.895112321462213 3 3 0 -6.74502812980324 LTS-039 chr19 52803677 54103668 1299992 * c(ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF813, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF610, ZNF600, ZNF320, ZNF525, LOC284379, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, ZNF331, ZNF701, ZNF83, ZNF415, FAM90A27P, ZNF28, ZNF137P, ZNF665, ZNF702P, ZNF611, ZNF528, ZNF347, ZNF468, ZNF160, ZNF765, ZNF845) 0.116842307217265 39 0.0900212300646252 0.610040947700603 1775 0.349420056564624 3 3 0 -6.88041489433728 LTS-039 chr19 54103669 54604159 500491 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, OSCAR, LOC284379, VSTM1, TARM1, MIR372, MIR373, DPRX, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, NA NA NA NA NA NA NA NA NA LTS-039 MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, NLRP12, MYADM) 0.132099894426515 15 0.058922063132663 0.401111411559386 874 0.240007740582275 2 2 0 -7.24869125388344 LTS-039 NA NA NA NA LTS-039 chr19 54604160 54604258 99 * OSCAR NA 0 NA 0.533 1 NA NA NA NA NA LTS-039 chr19 54604259 54662250 57992 * c(OSCAR, PRPF31, TFPT, NDUFA3, CNOT3, LENG1) 0.106061317465388 9 0.0387248126026597 0.836346118480967 317 0.341315411019112 4 4 0 -6.7802066271378 LTS-039 chr19 54662251 54663324 1074 * LENG1 NA 0 NA 1.354 1 NA NA NA NA NA LTS-039 chr19 54663325 54720734 57410 * c(LILRB3, TMC4, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.0973395041023081 11 0.0317816413558634 1.32809691613186 261 0.510725073592198 4 4 0 -6.75637296825064 LTS-039 chr19 54720735 54726241 5507 * c(LILRB3, LILRA6) 0.077 1 NA 0.482175319152768 50 0.29147191834493 2 2 0 -5.76476886300585 LTS-039 chr19 54726242 54726784 543 * c(LILRB3, LILRA6) 0.304 1 NA 0.487570119271604 7 0.388257155822812 2 2 0 -5.76442569327731 LTS-039 chr19 54726785 54800203 73419 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, LILRA6) 0.27375531268367 8 0.153311948560536 0.460045900989321 224 0.301753884963901 1 1 0 -6.79360379230444 LTS-039 chr19 54800204 54818360 18157 * c(LILRA3, LILRA5, LILRA6) NA 0 NA 0.128499544826582 40 0.059641471546275 0 NA NA -5.9937972115901 LTS-039 chr19 54818361 54947685 129325 * c(LILRA4, LILRA5, LAIR1, TTYH1) 0.206332857543743 11 0.0719525095904489 0.408698711100407 276 0.20877466198312 1 1 0 -6.92274763211204 LTS-039 chr19 54947686 54947778 93 * TTYH1 NA 0 NA 1.068 1 NA NA NA NA NA LTS-039 chr19 54947779 54976702 28924 * c(LENG8, CDC42EP5, TTYH1, LENG9) 0.117187503177872 11 0.018214379933548 0.757723877608238 204 0.367658584863273 3 3 0 -6.74293314929163 LTS-039 chr19 54976703 55009100 32398 * c(CDC42EP5, LAIR2) NA 0 NA 0.263 1 NA NA NA NA NA LTS-039 chr19 55009101 55281315 272215 * c(LILRB1, LILRB4, LILRA1, LILRA2, KIR3DL3, KIR2DL1, KIR2DL3, KIR2DS4, LAIR2, LILRP2, KIR3DX1) 0.182122287477081 15 0.0991102320410869 0.377726485116147 452 0.199923675760879 1 1 0 -6.97077685608757 LTS-039 chr19 55281316 55281352 37 * c(KIR2DL1, KIR2DL3, KIR2DS4) 0.373 1 NA 0.640577599390873 3 0.137720731917892 3 3 0 -5.76442260832831 LTS-039 chr19 55281353 55333239 51887 * c(KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1) 0.339118839824334 11 0.105176042899512 0.416903087297973 123 0.176072017059091 3 2 1 -7.06177902279046 LTS-039 chr19 55333240 55333338 99 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.456 1 NA NA NA NA NA LTS-039 chr19 55333339 55358615 25277 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.203111692550596 39 0.314838345084843 0 NA NA -5.76929915621281 LTS-039 chr19 55358616 55358645 30 * c(KIR2DS4, KIR3DL1) 0.307 1 NA 1.142 1 NA NA NA NA NA LTS-039 chr19 55358646 55377891 19246 * c(KIR2DS4, KIR3DL1, KIR3DL2) 0.354558940430661 13 0.0766914396988146 0.60955608276683 42 0.294645987313117 3 2 1 -6.76408531396458 LTS-039 chr19 55377892 55377903 12 * c(KIR3DL1, KIR3DL2) 0.206 1 NA 1.191 1 NA NA NA NA NA LTS-039 chr19 55377904 55568258 190355 * c(RNU6-64P, RDH13, NLRP7, FCAR, KIR3DL1, KIR3DL2, GP6, NLRP2, NCR1) 0.116911432262068 13 0.0460280015107861 0.494767878923439 392 0.24376286967113 3 3 0 -6.97795062488796 LTS-039 chr19 55568259 55570452 2194 * RDH13 NA 0 NA 0.914 1 NA NA NA NA NA LTS-039 chr19 55570453 55597375 26923 * c(RDH13, EPS8L1) 0.0704741627648782 3 0.00635085296108588 1.20428108492719 94 0.434262572955008 6 6 0 -6.83290053240679 LTS-039 chr19 55597376 55805805 208430 * c(PPP6R1, HSPBP1, TMEM86B, DNAAF3, PPP1R12C, EPS8L1, PTPRH, SYT5, TNNI3, TNNT1, BRSK1) 0.0916528438174765 6 0.0622896460095897 0.660393697926655 645 0.364145894486636 4 4 0 -6.81896448495909 LTS-039 chr19 55805806 55812791 6986 * BRSK1 NA 0 NA 1.479 1 NA NA NA NA NA LTS-039 chr19 55812792 55817814 5023 * BRSK1 NA 0 NA 1.7721051830161 53 0.758026459437629 9 NA NA -5.76441092934225 LTS-039 chr19 55817815 55819954 2140 * BRSK1 NA 0 NA 1.277 1 NA NA NA NA NA LTS-039 chr19 55819955 55918953 98999 * c(COX6B2, TMEM190, UBE2S, TMEM150B, FAM71E2, IL11, TMEM238, RPL28, BRSK1, KMT5C) 0.0631014380708916 11 0.0611495930262232 1.03709876022463 412 0.337482176929045 6 6 0 -6.75520573618741 LTS-039 chr19 55918954 55942883 23930 * c(UBE2S, SHISA7) NA 0 NA 0.511 1 NA NA NA NA NA LTS-039 chr19 55942884 55966346 23463 * c(SHISA7, ISOC2) 0.13116917230223 2 0.0756604255869606 0.56541668782437 80 0.202179690412242 3 3 0 -6.76542522295537 LTS-039 chr19 55966347 55966381 35 * ISOC2 NA 0 NA 0.81 1 NA NA NA NA NA LTS-039 chr19 55966382 56201426 235045 * c(SBK3, ZNF865, U2AF2, ZNF524, ZNF784, ZNF579, SSC5D, CCDC106, EPN1, ZNF580, ZNF581, NAT14, SBK2, ISOC2, FIZ1, ZNF628) 0.0926888054298095 12 0.0494781096378321 0.976199712481572 655 0.737827145123091 4 4 0 -6.73682667482096 LTS-039 chr19 56201427 56203067 1641 * EPN1 NA 0 NA 0.454 1 NA NA NA NA NA LTS-039 chr19 56203068 56273188 70121 * c(EPN1, NLRP9, RFPL4A) 0.129 1 NA 0.52418198040459 133 0.222821791593283 2 2 0 -5.76454294152113 LTS-039 chr19 56273189 56289151 15963 * c(RFPL4A, RFPL4AL1) 0.167079772453678 8 0.0756457911207604 0.293397911158368 73 0.404103852860251 2 2 0 -6.75872652931682 LTS-039 chr19 56289152 56573120 283969 * c(NLRP13, NLRP8, NLRP5, NLRP4, NLRP11) 0.162546575290438 23 0.0484556355504784 0.404832902161609 475 0.180714615140143 2 2 0 -7.09489984959264 LTS-039 chr19 56573121 57089965 516845 * c(ZNF667-AS1, NLRP5, ZNF787, ZFP28, ZNF542P, ZNF582, ZNF583, ZSCAN5B, ZNF582-AS1, ZNF470, ZNF444, ZNF471, ZNF667, ZSCAN5A, GALP) 0.119880210575935 23 0.0529501219547204 0.676440295283326 624 0.592577688796008 3 3 0 -6.73528933569947 LTS-039 chr19 57089966 57132672 42707 * c(ZNF470, ZNF71) NA 0 NA 0.41 1 NA NA NA NA NA LTS-039 chr19 57132673 57672209 539537 * c(MIMT1, PEG3-AS1, ZIM3, SMIM17, ZIM2, DUXA, PEG3, USP29, ZNF71, ZNF835) 0.149807029023381 13 0.0514950831608571 0.458457744606039 525 0.231416889242512 2 2 0 -6.88373377785579 LTS-039 chr19 57672210 57672230 21 * DUXA 0 1 NA 2.349 1 NA NA NA NA NA LTS-039 chr19 57672231 58367344 695114 * c(ZNF587B, ZNF211, TRAPPC2B, ZNF460, ZNF543, ZNF548, ZNF550, ZSCAN4, FKBP1AP1, ZNF549, ZNF547, ZIK1, ZNF776, ZNF530, ZNF773, ZNF749, ZNF805, ZNF772, DUXA, ZNF586, ZNF416, VN1R1, ZNF304, AURKC, ZNF814, ZNF17, ZNF134, ZNF154, ZNF419, ZNF552, ZNF671, ZNF587, ZNF551, ZNF264) 0.10120802453091 34 0.0799401068135504 0.96835376447333 1488 1.16385311445925 4 4 0 -6.73839331291755 LTS-039 chr19 58367345 58367364 20 * c(ZNF814, ZNF587) NA 0 NA 0.763 1 NA NA NA NA NA LTS-039 chr19 58367365 58370904 3540 * c(ZNF814, ZNF587) 0.113 1 NA 0.394324255365651 40 0.263827833332698 1 1 0 -5.76483726061756 LTS-039 chr19 58370905 58512194 141290 * c(ZNF256, C19orf18, ZNF418, ZNF417, ZNF814, ZNF606, ZNF587) 0.117264565169469 16 0.0830924936441313 0.88630708947104 467 0.536679415122616 3 3 0 -6.74766784922497 LTS-039 chr19 58512195 58512614 420 * ZNF606 NA 0 NA 1.482 1 NA NA NA NA NA LTS-039 chr19 58512615 58570697 58083 * c(LOC100128398, ZSCAN1, ZNF135, ZNF606) 0.0512022107738792 10 0.0140696679262716 1.54645753953434 202 0.71845923758768 8 8 0 -6.73993141019674 LTS-039 chr19 58570698 58601221 30524 * c(ZSCAN18, ZNF135) 0.0856514326479744 8 0.0294606274785275 0.82175399892659 126 0.32700619565996 5 5 0 -6.77310968502841 LTS-039 chr19 58601222 58992027 390806 * c(A1BG, MIR4754, ZNF274, SLC27A5, ZNF837, ZNF497, ZNF584, ZNF324, ZNF544, ZSCAN22, ZNF324B, A1BG-AS1, ZNF446, RPS5, RNF225, ZSCAN18, ZNF8, ZNF132, ZNF329) NA 0 NA 0.8776651662702 678 0.348483679283733 4 NA NA -5.76489741680251 LTS-039 chr19 58992028 59084001 91974 * c(MZF1-AS1, TRIM28, SLC27A5, CHMP2A, ZNF446, MZF1, ZBTB45, UBE2M) NA 0 NA 1.24110838803277 271 0.379302337630506 6 NA NA -5.76444302153723 LTS-039 chr20 68260 168466 100207 * c(DEFB127, DEFB125, DEFB126) 0.247 1 NA 0.745197261445097 51 0.463795853501829 3 3 0 -5.76501759097176 LTS-039 chr20 168467 264726 96260 * c(C20orf96, DEFB129, DEFB128, DEFB132) 0.254224088000766 4 0.0347035060668707 0.967122328533117 127 0.50159908945709 5 4 1 -6.75740920396427 LTS-039 chr20 264727 270215 5489 * C20orf96 NA 0 NA 2.731 1 NA NA NA NA NA LTS-039 chr20 270216 333975 63760 * c(C20orf96, SOX12, NRSN2, ZCCHC3) 0.225578087970297 5 0.0331858403539823 2.07101255947868 197 0.794034928598128 10 8 2 -6.73321335928058 LTS-039 chr20 333976 826945 492970 * c(RBCK1, SLC52A3, TBC1D20, SRXN1, CSNK2A1, TRIB3, TCF15, NRSN2, FAM110A, SCRT2) 0.255455350337266 27 0.0476108692610718 1.27929625083906 716 0.620523610564277 5 4 1 -6.77328288945911 LTS-039 chr20 826946 853277 26332 * character(0) NA 0 NA 0.756 1 NA NA NA NA NA LTS-039 chr20 853278 1188620 335343 * c(RSPO4, C20orf202, ANGPT4, TMEM74B, PSMF1) 0.132262103019254 3 0.132152689466894 0.851911286500916 311 0.42124622726508 3 3 0 -6.77534645936412 LTS-039 chr20 1188621 1223536 34916 * c(C20orf202, RAD21L1) NA 0 NA 1.75743577212919 45 0.611905165293717 9 NA NA -5.76443392965808 LTS-039 chr20 1223537 1223747 211 * RAD21L1 NA 0 NA 0.905 1 NA NA NA NA NA LTS-039 chr20 1223748 1317333 93586 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SDCBP2, RAD21L1, SNPH) 0.219287074273469 3 0.0464793861118381 0.789873158627143 218 0.424633066560718 6 5 1 -6.81353764208606 LTS-039 chr20 1317334 1350132 32799 * c(SDCBP2-AS1, FKBP1A-SDCBP2, FKBP1A) NA 0 NA 1.131 1 NA NA NA NA NA LTS-039 chr20 1350133 1515240 165108 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPD, FKBP1A, SIRPB2, NSFL1C) 0.281899665739101 5 0.0597369232552196 1.23508328444393 234 0.549888739192418 8 6 2 -6.76156326624471 LTS-039 chr20 1515241 1517834 2594 * SIRPD NA 0 NA 0.681 1 NA NA NA NA NA LTS-039 chr20 1517835 1559003 41169 * c(SIRPB1, SIRPD) 0.301 1 NA 0.751877172418572 66 0.271625335423305 3 3 0 -5.76544287158861 LTS-039 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.732 1 NA NA NA NA NA LTS-039 chr20 1559182 1592037 32856 * SIRPB1 NA 0 NA 0.169662366874401 39 0.159264571636876 0 NA NA -5.76441109813384 LTS-039 chr20 1592038 1592229 192 * SIRPB1 NA 0 NA 1.109 1 NA NA NA NA NA LTS-039 chr20 1592230 3129764 1537535 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, SIRPB1, NOP56, TMC2, C20orf141, SIRPA, STK35, UBOX5, GNRH2, IDH3B, TGM6, OXT, PDYN, AVP, SIRPG, CPXM1, EBF4, PTPRA, FASTKD5, VPS16, PCED1A, MRPS26, SNRPB, SNORA51, SNORD110, TGM3, ZNF343) 0.229502268528809 35 0.0856730348917501 1.18199106556152 1583 0.521122817702772 6 5 1 -6.76960373038162 LTS-039 chr20 3129765 3129777 13 * c(UBOX5-AS1, UBOX5, FASTKD5) NA 0 NA 1.803 1 NA NA NA NA NA LTS-039 chr20 3129778 3148877 19100 * c(UBOX5-AS1, UBOX5, FASTKD5, LZTS3) 0.239453018684166 3 0.0259422435421457 2.06282481871766 109 0.749106622295137 18 14 4 -6.74834698353315 LTS-039 chr20 3148878 3759098 610221 * c(HSPA12B, SPEF1, C20orf194, ITPA, C20orf27, GFRA4, DDRGK1, SIGLEC1, ADAM33, SLC4A11, ATRN, LZTS3) 0.232406306098985 39 0.064015127682445 1.20644556223517 1272 0.547568010095231 5 4 1 -6.78348340961512 LTS-039 chr20 3759099 3835376 76278 * c(CENPB, SPEF1, AP5S1, MAVS, CDC25B) 0.236242277045097 2 0.00282842712474619 1.94245859809138 232 0.90263117307867 18 14 4 -6.75284013219346 LTS-039 chr20 3835377 3907286 71910 * c(MIR103B2, MIR103A2, MAVS, PANK2) 0.23313011303508 7 0.0295747640170918 1.22385620484123 212 0.595827126504433 10 8 2 -6.79667638650955 LTS-039 chr20 3907287 3912070 4784 * RNF24 NA 0 NA 2.893 1 NA NA NA NA NA LTS-039 chr20 3912071 3914302 2232 * RNF24 0.204021517554089 6 0.0241909073827337 2.61295409250481 50 0.800809937194965 16 13 3 -6.73391789665685 LTS-039 chr20 3914303 3914313 11 * RNF24 NA 0 NA 1.138 1 NA NA NA NA NA LTS-039 chr20 3914314 5261212 1346899 * c(PCNA-AS1, RNF24, ADRA1D, PRNT, PRND, TMEM230, PCNA, SMOX, PRNP, LINC01433, CDS2, RASSF2, SLC23A2) 0.252016151953885 31 0.0665564842175265 1.25578370019623 1016 0.589542096364645 5 4 1 -6.79323318817594 LTS-039 chr20 5261213 5272058 10846 * character(0) NA 0 NA 0.507 1 NA NA NA NA NA LTS-039 chr20 5272059 5482351 210293 * c(LINC00658, PROKR2, LINC00654, LOC643406) 0.261412360017011 9 0.0651826493614503 0.518643110497459 76 0.245063676651672 1 1 0 -7.09041072138379 LTS-039 chr20 5482352 5482375 24 * LINC00654 NA 0 NA 1.487 1 NA NA NA NA NA LTS-039 chr20 5482376 5753535 271160 * c(LINC00654, C20orf196, GPCPD1) 0.238490920690954 4 0.0164392822227736 1.95969950033807 196 1.68454513783466 18 14 4 -6.7635766097189 LTS-039 chr20 5753536 5753579 44 * C20orf196 0.271 1 NA 0.642 1 NA NA NA NA NA LTS-039 chr20 5753580 5905979 152400 * c(CHGB, C20orf196) NA 0 NA 0.86964820551578 110 0.294537241967387 4 NA NA -5.7650721614274 LTS-039 chr20 5905980 6015162 109183 * c(CHGB, TRMT6, CRLS1, MCM8) 0.271275525483307 5 0.0266645832519468 1.47888839528423 237 0.801924689152837 8 6 2 -6.75528021449502 LTS-039 chr20 6015163 10594162 4579000 * c(SNAP25-AS1, SLX4IP, LRRN4, PLCB1, LAMP5, PLCB4, HAO1, CRLS1, FERMT1, TMX4, PAK5, ANKEF1, BMP2, SNAP25, MKKS) 0.260362465811658 42 0.0466300897805102 1.00716488481712 1401 0.443365803464426 5 4 1 -6.83201858711956 LTS-039 chr20 10594163 10601944 7782 * SLX4IP NA 0 NA 1.86 1 NA NA NA NA NA LTS-039 chr20 10601945 10654540 52596 * c(SLX4IP, JAG1) 0.244686159918559 5 0.007162401831788 2.23521246168003 234 1.48160360889111 5 4 1 -6.83689264771627 LTS-039 chr20 10654541 11008402 353862 * JAG1 NA 0 NA 0.832 1 NA NA NA NA NA LTS-039 chr20 11008403 13756948 2748546 * c(ISM1-AS1, ISM1, BTBD3, LOC339593, ESF1, SPTLC3, TASP1) 0.230284050271247 10 0.0474469294170983 1.11763645793213 541 0.521289070106186 5 4 1 -6.82212421453742 LTS-039 chr20 13756949 13763173 6225 * ESF1 NA 0 NA 2.939 1 NA NA NA NA NA LTS-039 chr20 13763174 13775602 12429 * c(ESF1, NDUFAF5) 0.133 1 NA 2.34439347678528 44 0.783505818316719 12 12 0 -5.7644103118454 LTS-039 chr20 13775603 13779062 3460 * NDUFAF5 NA 0 NA 0.979 1 NA NA NA NA NA LTS-039 chr20 13779063 16360864 2581802 * c(MACROD2-AS1, MACROD2, FLRT3, KIF16B, NDUFAF5, SEL1L2) 0.219285462126785 21 0.0750415123210385 0.974017965391986 570 0.584601487475241 5 4 1 -6.85862372038963 LTS-039 chr20 16360865 16362217 1353 * KIF16B NA 0 NA 1.289 1 NA NA NA NA NA LTS-039 chr20 16362218 19870308 3508091 * c(C20orf78, LOC100130264, LOC100270804, PET117, MIR3192, SEC23B, POLR3F, RBBP9, DSTN, BANF2, SCP2D1, SNX5, LINC00652, LINC00493, LINC00851, PCSK2, RIN2, DZANK1, KIF16B, OTOR, KAT14, SLC24A3, OVOL2, RRBP1, BFSP1, SNRPB2, SNORD17, ZNF133, MGME1, DTD1) 0.238112334370359 29 0.0547187164600421 1.26158834794593 1609 0.626973831137684 6 5 1 -6.86764361546176 LTS-039 chr20 19870309 19915631 45323 * RIN2 NA 0 NA 3.567 1 NA NA NA NA NA LTS-039 chr20 19915632 19956486 40855 * RIN2 NA 0 NA 2.87488710385548 55 1.03334925957098 15 NA NA -5.76441014543024 LTS-039 chr20 19956487 19970618 14132 * RIN2 NA 0 NA 0.79 1 NA NA NA NA NA LTS-039 chr20 19970619 20033436 62818 * c(CFAP61, NAA20, CRNKL1, RIN2) 0.181 1 NA 1.52064506663796 230 0.512459667433599 7 7 0 -5.76491443520535 LTS-039 chr20 20033437 20036573 3137 * c(CFAP61, CRNKL1) NA 0 NA 0.75 1 NA NA NA NA NA LTS-039 chr20 20036574 20501520 464947 * c(CFAP61, INSM1, CRNKL1, RALGAPA2) 0.248963988839312 11 0.051136715150307 0.951669445501489 433 0.456738905686931 5 4 1 -6.75242457005556 LTS-039 chr20 20501521 20501619 99 * RALGAPA2 NA 0 NA 1.283 1 NA NA NA NA NA LTS-039 chr20 20501620 23618581 3116962 * c(LINC01432, CST8, CSTL1, CST9L, CST9, LINC00261, CST11, CST3, CST13P, LINC00656, XRN2, CD93, LOC284788, NXT1, FOXA2, NKX2-2, PAX1, KIZ, RALGAPA2, NAPB, GZF1, NKX2-4, SSTR4, THBD) 0.234245771280946 15 0.0409631658002766 1.36636755301994 1312 0.713501028388643 6 5 1 -6.93365946937418 LTS-039 chr20 23618582 23666288 47707 * CST4 NA 0 NA 0.496 1 NA NA NA NA NA LTS-039 chr20 23666289 24944710 1278422 * c(CST1, CST2, CST4, CST5, FLJ33581, APMAP, SYNDIG1, CST7, GGTLC1) 0.239578393407935 6 0.130488313652986 0.810449712392722 193 0.329608546839119 4 3 1 -6.91301138825829 LTS-039 chr20 24944711 24944978 268 * APMAP NA 0 NA 1.268 1 NA NA NA NA NA LTS-039 chr20 24944979 25249848 304870 * c(LOC284798, VSX1, APMAP, PYGB, ACSS1, ENTPD6) 0.213585269790084 11 0.0734807334055546 1.6830096136322 410 0.679909814789172 10 8 2 -6.75982569683399 LTS-039 chr20 25249849 25251994 2146 * PYGB NA 0 NA 1.126 1 NA NA NA NA NA LTS-039 chr20 25251995 25753980 501986 * c(NANP, NINL, ABHD12, ZNF337, PYGB, FAM182B, GINS1) 0.240208407044904 23 0.0456284184381835 1.0897030830002 661 0.565174504647238 5 4 1 -6.74887985759468 LTS-039 chr20 25753981 25829290 75310 * FAM182B 0.456 1 NA 1.00893607840218 17 0.464636583161254 5 5 0 -5.76518384583291 LTS-039 chr20 25829291 26188954 359664 * c(LOC100134868, NCOR1P1, FAM182A, MIR663AHG, MIR663A, FAM182B) 0.336147045118242 19 0.0972013344311933 0.986546479944605 58 0.690822237324022 6 4 2 -6.78091571096533 LTS-039 chr20 26188955 26189020 66 * MIR663AHG NA 0 NA 0.734054606117386 3 0.0635085296108589 3 NA NA -5.76441976308308 LTS-039 chr20 29625845 29625876 32 * FRG1BP 0.332 1 NA 1.993 1 NA NA NA NA NA LTS-039 chr20 29625877 29961305 335429 * c(DEFB118, MLLT10P1, DEFB115, DEFB116, FRG1BP) 0.316705088480325 20 0.150402477583176 1.35721858124404 102 2.10076581362336 7 5 2 -6.73403802776649 LTS-039 chr20 29961306 30115438 154133 * c(DEFB118, LINC00028, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, HM13) NA 0 NA 1.50144059843218 137 0.748449624048329 7 NA NA -5.76476816006598 LTS-039 chr20 30115439 30125953 10515 * HM13 NA 0 NA 3.114 1 NA NA NA NA NA LTS-039 chr20 30125954 30386265 260312 * c(MCTS2P, MIR3193, HM13-AS1, TPX2, ID1, BCL2L1, HM13, COX4I2) NA 0 NA 3.47047461209545 260 2.56885597044606 18 NA NA -5.76441557419012 LTS-039 chr20 30386266 30449177 62912 * c(DUSP15, TPX2, FOXS1, MYLK2) 0.448 1 NA 2.20217513011824 187 0.564178723398941 11 11 0 -5.76446576965048 LTS-039 chr20 30449178 30754768 305591 * c(DUSP15, CCM2L, TTLL9, HCK, XKR7, PDRG1, TM9SF4) 0.451265338888173 13 0.0314139035035975 2.18755769864699 554 0.993758865402 12 6 6 -6.98066441380783 LTS-039 chr20 30754769 30754771 3 * TM9SF4 NA 0 NA 3.006 1 NA NA NA NA NA LTS-039 chr20 30754772 30826503 71732 * c(TSPY26P, POFUT1, PLAGL2, TM9SF4) 0.440530277774184 8 0.030964265117805 3.16790039440177 289 1.48404956997042 16 8 8 -6.79299049307398 LTS-039 chr20 30826504 30897442 70939 * KIF3B NA 0 NA 1.934 1 NA NA NA NA NA LTS-039 chr20 30897443 31315867 418425 * c(NOL4L, LOC149950, COMMD7, ASXL1, C20orf203, KIF3B) 0.387815158350128 13 0.061395731915467 1.78804787598406 655 0.868365521622009 8 5 3 -6.73805827206881 LTS-039 chr20 31315868 31374520 58653 * c(COMMD7, DNMT3B) 0.308 1 NA 1.75030761318339 53 0.692459957815988 9 9 0 -5.76445486244822 LTS-039 chr20 31374521 31477268 102748 * c(DNMT3B, MAPRE1) 0.31498331497337 10 0.0432872832237008 1.54034939505383 235 0.58460813480971 7 5 2 -6.73913001448848 LTS-039 chr20 31477269 31479926 2658 * character(0) NA 0 NA 0.96 1 NA NA NA NA NA LTS-039 chr20 31479927 31885506 405580 * c(BPIFB6, BPIFA3, BPIFA2, SUN5, BPIFB4, BPIFA4P, BPIFB3, BPIFA1, BPIFB2, BPIFB1) 0.312100809838699 13 0.0412100622514603 1.18700634648955 655 0.457209681026958 7 5 2 -6.77453053911635 LTS-039 chr20 31885507 32233718 348212 * c(CDK5RAP1, SNTA1, CBFA2T2, BPIFB1) 0.215717572461774 6 0.123600566341745 1.6899692999664 294 0.686067565422981 10 8 2 -6.74780262533588 LTS-039 chr20 32233719 32319880 86162 * c(PXMP4, C20orf144, ACTL10, E2F1, NECAB3, ZNF341, CBFA2T2) 0.237340816388911 6 0.025958941940431 3.08614911889515 325 1.10961009529913 18 14 4 -6.73487841978119 LTS-039 chr20 32319881 32328661 8781 * ZNF341 NA 0 NA 2.032 1 NA NA NA NA NA LTS-039 chr20 32328662 33577971 1249310 * c(MIR4755, CHMP4B, PIGU, HMGB3P1, AHCY, RALY, NCOA6, GGT7, GSS, ASIP, ACSS2, MYH7B, TP53INP2, MIR644A, DYNLRB1, ITCH, MAP1LC3A, ZNF341, EIF2S2) 0.32295792548123 11 0.0441322392979843 1.83195175934594 1389 0.750697570724421 10 7 3 -6.75138911436672 LTS-039 chr20 33577972 33595558 17587 * c(MIR499B, TRPC4AP, MIR499A, MYH7B) 0.277611976656801 11 0.0328088125633675 1.23870806107194 190 0.380811891325324 8 6 2 -6.73902847938043 LTS-039 chr20 33595559 33596462 904 * TRPC4AP NA 0 NA 1.965 1 NA NA NA NA NA LTS-039 chr20 33596463 34054893 458431 * c(MMP24-AS1, PROCR, MMP24, CEP250, FAM83C, TRPC4AP, EIF6, UQCC1, EDEM2, GDF5) 0.312761968569269 18 0.0567670679179399 2.05316287671631 677 1.37557287867733 10 7 3 -6.73660131775843 LTS-039 chr20 34054894 34055066 173 * CEP250 NA 0 NA 1.561 1 NA NA NA NA NA LTS-039 chr20 34055067 34203850 148784 * c(CEP250, C20orf173, ERGIC3, SPAG4) 0.270860715518017 3 0.0100166528008778 1.30763900005504 441 0.53471748212834 12 9 3 -6.87796290068776 LTS-039 chr20 34203851 35433383 1229533 * c(TGIF2-C20orf24, RBM12, MYL9, SOGA1, ROMO1, CNBD2, EPB41L1, DLGAP4, AAR2, PHF20, SCAND1, C20orf24, NDRG3, TGIF2, NORAD, SPAG4, DSN1, SLA2, CPNE1, NFS1, RBM39) 0.314633967730602 34 0.0549768708457087 1.74661725266948 1924 0.795424975340639 10 7 3 -6.75163293236079 LTS-039 chr20 35433384 35434266 883 * SOGA1 NA 0 NA 2.324 1 NA NA NA NA NA LTS-039 chr20 35434267 35522607 88341 * c(SOGA1, TLDC2, SAMHD1) 0.194 1 NA 2.37827970332879 180 1.263907095182 12 12 0 -5.76442108907908 LTS-039 chr20 35522608 35526183 3576 * c(TLDC2, SAMHD1) NA 0 NA 0.512 1 NA NA NA NA NA LTS-039 chr20 35526184 35563599 37416 * SAMHD1 0.406401679516699 2 0.000707106781186509 0.916444655824341 59 0.442248887959289 5 3 2 -7.22732521740017 LTS-039 chr20 35563600 35569396 5797 * SAMHD1 NA 0 NA 3.34 1 NA NA NA NA NA LTS-039 chr20 35569397 37207126 1637730 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, SNHG11, MROH8, SAMHD1, SNORA71B, SNORA71A, GHRH, SNHG17, LBP, NNAT, CTNNBL1, RALGAPB, RPRD1B, RBL1, RPN2, MANBAL, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, TGM2, KIAA1755, TTI1) 0.300548277753991 47 0.0661256827597571 1.64207116761159 1837 0.71749762636579 7 5 2 -6.78303885981568 LTS-039 chr20 37207127 37549950 342824 * c(SLC32A1, ADIG, PPP1R16B, ARHGAP40, RALGAPB, ACTR5) 0.259252926419743 8 0.109832014588513 1.15835430171242 386 0.654098985095277 5 4 1 -6.74267536288182 LTS-039 chr20 37549951 37668371 118421 * c(PPP1R16B, DHX35, FAM83D) NA 0 NA 1.51669031705756 235 0.536440216461653 7 NA NA -5.76520313563714 LTS-039 chr20 39314453 39745125 430673 * c(TOP1, MAFB) 0.252 1 NA 2.42347411826971 192 0.846166955741264 12 12 0 -5.76490402414348 LTS-039 chr20 39745126 39746895 1770 * TOP1 NA 0 NA 1.383 1 NA NA NA NA NA LTS-039 chr20 39746896 40080630 333735 * c(ZHX3, PLCG1, LPIN3, TOP1, CHD6, EMILIN3) 0.258773243897018 4 0.0491824833316361 1.29974862019142 825 0.472713449196747 5 4 1 -6.79698296368235 LTS-039 chr20 40080631 40081434 804 * CHD6 NA 0 NA 1.913 1 NA NA NA NA NA LTS-039 chr20 40081435 40162187 80753 * CHD6 0.258 1 NA 1.93371585058099 134 0.764880526917676 10 10 0 -5.76444625082249 LTS-039 chr20 40162188 40179806 17619 * CHD6 NA 0 NA 1.432 1 NA NA NA NA NA LTS-039 chr20 40179807 41514566 1334760 * c(PTPRT, CHD6) 0.255849025656997 14 0.0850679431105216 1.17792958714574 382 0.621725225361288 5 4 1 -6.75697284774782 LTS-039 chr20 41514567 42144925 630359 * c(PTPRT, L3MBTL1, SRSF6) 0.324 1 NA 2.43231667830714 122 0.69965664445696 13 13 0 -5.7652924624319 LTS-039 chr20 42144926 42157191 12266 * L3MBTL1 NA 0 NA 1.457 1 NA NA NA NA NA LTS-039 chr20 42157192 42835681 678490 * c(SGK2, GTSF1L, L3MBTL1, MYBL2, IFT52, OSER1, JPH2, TOX2) 0.276480888135854 13 0.0360967361263364 1.44851072502284 645 0.593431572616841 8 6 2 -6.74647472985861 LTS-039 chr20 42835682 42875833 40152 * c(OSER1-AS1, OSER1, GDAP1L1) NA 0 NA 0.465 1 NA NA NA NA NA LTS-039 chr20 42875834 42908945 33112 * GDAP1L1 NA 0 NA 0.721180202581575 66 0.268044191899748 3 NA NA -5.7644632617745 LTS-039 chr20 42908946 43118365 209420 * c(MIR3646, FITM2, R3HDML, HNF4A, GDAP1L1, TTPAL) 0.134016198899658 2 0.161220346110533 1.29181214466075 312 0.498131235851483 8 7 1 -6.77940385228832 LTS-039 chr20 43118366 43381011 262646 * c(ADA, SERINC3, PKIG, RIMS4, KCNK15, LINC01260, TTPAL, WISP2) 0.257731062623011 5 0.140938993894522 1.90868474571702 395 1.58218995565429 9 7 2 -6.73580447647509 LTS-039 chr20 43381012 43852139 471128 * c(STK4-AS1, TOMM34, WFDC12, RIMS4, WFDC5, KCNS1, PI3, SEMG1, SEMG2, STK4, YWHAB, PABPC1L) 0.278205443065332 15 0.09963968419594 1.45429359100262 784 0.657328430362983 8 6 2 -6.74030201888146 LTS-039 chr20 43852140 43880810 28671 * SEMG2 NA 0 NA 4.47 1 NA NA NA NA NA LTS-039 chr20 43880811 43926586 45776 * c(SLPI, MATN4) 0.317407414278842 2 0.0148492424049175 3.64650551542081 40 1.04238360845683 10 7 3 -6.74296772492681 LTS-039 chr20 43926587 44162978 236392 * c(WFDC2, SPINT3, RBPJL, WFDC6, TP53TG5, PIGT, DBNDD2, SDC4, SYS1-DBNDD2, MATN4, SYS1) 0.309310041025134 7 0.0272877087279062 1.82609828807474 475 0.874258386532486 7 5 2 -6.74611783300207 LTS-039 chr20 44162979 44378681 215703 * c(EPPIN-WFDC6, WFDC10A, WFDC6, WFDC13, WFDC11, WFDC9, WFDC10B, SPINT4, EPPIN, WFDC8) 0.272936587730978 14 0.0365879941877294 1.21718348353635 271 0.625892394607009 8 6 2 -6.76432810589778 LTS-039 chr20 44378682 44402762 24081 * character(0) NA 0 NA 2.192 1 NA NA NA NA NA LTS-039 chr20 44402763 44469142 66380 * c(UBE2C, DNTTIP1, WFDC3, TNNC2, SNX21) 0.315145814107369 9 0.0398124073346209 2.37588720313263 219 0.944506066052438 10 7 3 -6.73586594680327 LTS-039 chr20 44469143 44607993 138851 * c(ACOT8, SPATA25, NEURL2, ZSWIM3, PLTP, CTSA, ZNF335, PCIF1, SNX21, ZSWIM1) 0.313001319559398 14 0.0489020662949132 1.73773115541079 688 0.649743515958862 10 7 3 -6.7402670686585 LTS-039 chr20 44607994 44880360 272367 * c(MMP9, SLC12A5, NCOA5, CDH22, CD40) 0.287991415211686 8 0.0637175687815266 1.11749083315883 527 0.532879113849729 4 3 1 -6.77570327775669 LTS-039 chr20 44880361 44978178 97818 * c(SLC35C2, CDH22) NA 0 NA 2.654 1 NA NA NA NA NA LTS-039 chr20 44978179 45280051 301873 * c(ZNF663P, OCSTAMP, SLC35C2, ZNF334, ELMO2, SLC13A3, MKRN7P) 0.21415798662368 5 0.17575608097588 1.56788596533609 494 0.665499427119981 7 6 1 -6.75251948620335 LTS-039 chr20 45280052 45313037 32986 * c(TP53RK, SLC13A3) NA 0 NA 11.988 1 NA NA NA NA NA LTS-039 chr20 45313038 45315486 2449 * c(TP53RK, SLC13A3) NA 0 NA 7.11732272082804 52 2.08297745717616 20 NA NA -5.76454578473162 LTS-039 chr20 45315487 45618858 303372 * c(TP53RK, EYA2, SLC2A10) 0.286073058004255 6 0.160492575113825 3.40266574604681 133 3.66415083211107 18 13 5 -6.73320300072704 LTS-039 chr20 45618859 45629960 11102 * EYA2 NA 0 NA 2.04 1 NA NA NA NA NA LTS-039 chr20 45629961 45841473 211513 * c(MIR3616, EYA2, ZMYND8) NA 0 NA 2.00715292136203 131 0.880423754536064 10 NA NA -5.764454119006 LTS-039 chr20 45841474 45848794 7321 * ZMYND8 NA 0 NA 4.208 1 NA NA NA NA NA LTS-039 chr20 45848795 45927551 78757 * ZMYND8 0.269 1 NA 4.53497441933892 131 1.3805917482506 20 20 0 -5.76523400795324 LTS-039 chr20 45927552 45985536 57985 * c(LOC100131496, ZMYND8) NA 0 NA 10.177207917185 41 2.48320677950027 20 NA NA -5.76994191643864 LTS-039 chr20 45985537 46250934 265398 * NCOA3 NA 0 NA 1.792 1 NA NA NA NA NA LTS-039 chr20 46250935 46365571 114637 * c(SULF2, NCOA3) 0.222429188873418 3 0.0278747197295327 3.51563506189599 317 1.10616057037087 19 15 4 -6.7356190596895 LTS-039 chr20 46365572 46386260 20689 * SULF2 NA 0 NA 3.34280484196061 9 1.37859647830683 18 NA NA -5.76441338872823 LTS-039 chr20 47240843 47580347 339505 * c(ARFGEF2, PREX1) 0.408 1 NA 2.08314286537011 265 0.888318290603228 11 11 0 -5.7647069204494 LTS-039 chr20 47580348 47892267 311920 * c(ARFGEF2, CSE1L, DDX27, ZNFX1, STAU1) 0.364649317580827 28 0.0382357453467593 1.72003971771716 808 0.680891316759876 11 7 4 -6.77733161234991 LTS-039 chr20 47892268 47892270 3 * ZNFX1 0.369 1 NA 5.368 1 NA NA NA NA NA LTS-039 chr20 47892271 48701022 808752 * c(SNORD12B, TRERNA1, SLC9A8, SNORD12C, KCNB1, TMEM189-UBE2V1, ZFAS1, RNF114, ZNFX1, PTGIS, SNAI1, SNORD12, UBE2V1, B4GALT5, SPATA2) 0.296847127115201 10 0.155948852013872 2.34682368980063 815 1.34480344039894 11 8 3 -6.73593927131934 LTS-039 chr20 48701023 48701169 147 * c(TMEM189-UBE2V1, UBE2V1) NA 0 NA 4.863 1 NA NA NA NA NA LTS-039 chr20 48701170 48808263 107094 * c(CEBPB, TMEM189, TMEM189-UBE2V1, UBE2V1) 0.464308165934982 4 0.025798901785412 3.43111974747063 116 1.75548245567249 18 9 9 -7.60994675756443 LTS-039 chr20 48808264 49178004 369741 * c(CEBPB, LINC01270, PTPN1) 0.439089849861406 2 0.0212132034355964 7.86279557694776 51 8.12676977547226 20 10 10 -6.82736290582315 LTS-039 chr20 49178005 49181404 3400 * PTPN1 NA 0 NA 2.407 1 NA NA NA NA NA LTS-039 chr20 49181405 49620377 438973 * c(FAM65C, ADNP, MOCS3, KCNG1, BCAS4, PTPN1, MIR645, PARD6B, DPM1) 0.335001903530662 16 0.0690072158062715 2.21150984158018 619 1.20333498437608 12 8 4 -6.74554139257746 LTS-039 chr20 49620378 49620435 58 * KCNG1 NA 0 NA 0.981 1 NA NA NA NA NA LTS-039 chr20 49620436 53267635 3647200 * c(MIR3194, MIR4756, ATP9A, TSHZ2, CYP24A1, KCNG1, SUMO1P1, NFATC2, PFDN4, ZFP64, DOK5, SALL4, ZNF217, BCAS1) 0.370915747698923 41 0.0800945630139165 1.83663505869706 1386 0.906805256960092 9 6 3 -6.78192174438801 LTS-039 chr20 53267636 54572908 1305273 * c(CBLN4, DOK5) NA 0 NA 1.69653432647554 12 0.390490445310494 8 NA NA -5.7772880588319 LTS-039 chr20 54572909 54824898 251990 * c(CBLN4, MC3R) NA 0 NA 0.698988784809656 86 0.267259762355944 3 NA NA -5.76505041369863 LTS-039 chr20 54824899 54956547 131649 * c(FAM210B, AURKA) 0 1 NA 1.54110603547117 97 0.848970452899809 8 8 0 -5.76464161983116 LTS-039 chr20 54956548 55205396 248849 * c(GCNT7, CSTF1, FAM209A, FAM209B, RTFDC1, CASS4, AURKA, TFAP2C) 0.2586658515429 8 0.125365465739174 1.50122524599502 332 0.674651908962978 8 6 2 -6.7466256648211 LTS-039 chr20 55205397 56140652 935256 * c(MIR4325, MTRNR2L3, MIR5095, CTCFL, SPO11, PCK1, RBM38, BMP7, TFAP2C, RAE1) 0.260780530530247 12 0.0351774721299662 2.50503333001669 586 1.35589042388276 16 12 4 -6.7499092276997 LTS-039 chr20 56140653 57430435 1289783 * c(MIR298, MIR4532, C20orf85, APCDD1L-AS1, GNAS-AS1, APCDD1L, GNAS, MIR296, PCK1, PPP4R1L, PMEPA1, RAB22A, NPEPL1, ZBP1, STX16, VAPB) 0.253627249955329 19 0.0433530319599098 1.90196958698313 1212 0.90402542895614 9 7 2 -6.74440847420336 LTS-039 chr20 57430436 57430501 66 * GNAS NA 0 NA 3.01 1 NA NA NA NA NA LTS-039 chr20 57430502 57486152 55651 * GNAS 0.241570540636379 3 0.0260832002126529 3.23649623532351 118 1.43884649060489 18 14 4 -6.75952593923906 LTS-039 chr20 57486153 57556321 70169 * c(GNAS, NELFCD) NA 0 NA 1.169 1 NA NA NA NA NA LTS-039 chr20 57556322 57604061 47740 * c(SLMO2-ATP5E, CTSZ, ATP5E, NELFCD, TUBB1) 0.30043843247368 6 0.050307057159011 2.10108339249552 226 0.669256374954991 14 10 4 -6.73740264965497 LTS-039 chr20 57604062 57617932 13871 * c(SLMO2-ATP5E, PRELID3B, ATP5E) 0.277839650500747 4 0.0206942020865749 4.09897511723875 106 3.17125993125324 8 6 2 -6.73694300113136 LTS-039 chr20 57617933 57771131 153199 * ZNF831 0 1 NA 0.866860227675485 92 0.255681221921344 4 4 0 -5.76553397424876 LTS-039 chr20 57771132 57781893 10762 * ZNF831 NA 0 NA 1.841 1 NA NA NA NA NA LTS-039 chr20 57781894 58487422 705529 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3) 0.324881649406333 2 0.0134350288425444 1.74483492038834 422 0.68060392855366 13 9 4 -6.9179239279281 LTS-039 chr20 58487423 58647997 160575 * c(SYCP2, C20orf197, PPP1R3D, CDH26, FAM217B) 0.265844294576817 3 0.0211974841274462 2.73714416998566 446 1.19272783319929 16 12 4 -6.73877827970221 LTS-039 chr20 58647998 58883457 235460 * c(C20orf197, MIR646HG) NA 0 NA 0.615 1 NA NA NA NA NA LTS-039 chr20 58883458 60508163 1624706 * c(CDH4, MIR4533, MIR646HG) 0.286 1 NA 0.853660883181501 169 0.420623747123394 4 4 0 -5.77487441871667 LTS-039 chr20 60508164 60509114 951 * CDH4 NA 0 NA 1.912 1 NA NA NA NA NA LTS-039 chr20 60509115 60697432 188318 * c(CDH4, MIR1257, TAF4) 0.00576903495360341 3 0.00635085296108588 1.8695619114783 150 0.735005486168632 20 20 0 -9.45455543823472 LTS-039 chr20 60697433 60703002 5570 * LSM14B 0.375 1 NA 1.85291397435771 32 0.599030008941875 9 9 0 -5.76441983805827 LTS-039 chr20 60703003 60913675 210673 * c(MIR4758, ADRM1, HRH3, LSM14B, SS18L1, MTG2, LAMA5, PSMA7, OSBPL2) 0.35737477749064 29 0.079310001605597 1.94023671993592 848 0.703470694286058 9 6 3 -6.74242849124091 LTS-039 chr20 60913676 60917320 3645 * LAMA5 NA 0 NA 9.813 1 NA NA NA NA NA LTS-039 chr20 60917321 60965890 48570 * c(LAMA5, RPS21, CABLES2) 0.350063500200042 14 0.0480362157333196 3.61692694619425 149 1.34301592341355 20 13 7 -6.74118932655576 LTS-039 chr20 60965891 60965973 83 * CABLES2 NA 0 NA 2.305 1 NA NA NA NA NA LTS-039 chr20 60965974 61445086 479113 * c(SLCO4A1-AS1, LINC00659, OGFR-AS1, OGFR, MIR1-1HG, GATA5, RBBP8NL, C20orf166-AS1, SLCO4A1, MIR1-1, MIR133A2, NTSR1, MRGBP, CABLES2) 0.357565462514041 29 0.0429487035078467 1.85743938192851 640 0.892764266249188 9 6 3 -6.76121420279798 LTS-039 chr20 61445087 61445194 108 * OGFR NA 0 NA 2.397 1 NA NA NA NA NA LTS-039 chr20 61445195 61510414 65220 * c(DPH3P1, TCFL5, OGFR, DIDO1, COL9A3) 0.346428059536947 10 0.0676921134418347 2.68099278387582 270 1.40379983936423 12 8 4 -6.73377255758809 LTS-039 chr20 61510415 61513600 3186 * DIDO1 0.398 1 NA 1.20073293531173 77 0.283005416235435 6 6 0 -5.76445289209066 LTS-039 chr20 61513601 61584144 70544 * c(DIDO1, GID8, SLC17A9) NA 0 NA 1.93809477648935 243 0.682446933088069 10 NA NA -5.76444164655567 LTS-039 chr20 61584145 61584309 165 * SLC17A9 NA 0 NA 0.952 1 NA NA NA NA NA LTS-039 chr20 61584310 61918164 333855 * c(LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, BHLHE23, NKAIN4, MIR124-3, YTHDF1, ARFGAP1, SLC17A9, LOC63930, HAR1A, HAR1B, BIRC7) 0.356 1 NA 1.29279960311034 393 0.57778469442618 6 6 0 -5.76500718610148 LTS-039 chr20 61918165 61918237 73 * c(MIR4326, ARFGAP1) NA 0 NA 1.34090327007021 2 0.674579869251966 7 NA NA -5.7644105546092 LTS-039 chr20 61918238 61937296 19059 * c(ARFGAP1, COL20A1) 0.217 1 NA 1.01760738651264 75 0.253431583603085 5 5 0 -5.76489607249855 LTS-039 chr20 61937297 62152647 215351 * c(CHRNA4, EEF1A2, KCNQ2, COL20A1, PPDPF) 0.258222301770832 11 0.0420376454664582 0.898345487668532 441 0.366792152853869 5 4 1 -6.80117407363793 LTS-039 chr20 62152648 62567158 414511 * c(MIR941-1, MIR941-3, RTEL1-TNFRSF6B, ARFRP1, ZBTB46, ABHD16B, GMEB2, STMN3, RTEL1, LIME1, SLC2A4RG, PTK6, SRMS, TPD52L2, FNDC11, PPDPF, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.270549423914967 38 0.045574505613091 1.71020249328588 1374 0.686603473605629 8 6 2 -6.7444482123281 LTS-039 chr20 62567159 62700824 133666 * c(UCKL1-AS1, MIR1914, SAMD10, PRPF6, LINC00176, SOX18, UCKL1, ZNF512B, TCEA2, MIR647, DNAJC5) 0.214902213134083 11 0.105787866635417 2.35318252587368 518 1.18608294376187 15 12 3 -6.73577272620728 LTS-039 chr20 62700825 62701070 246 * TCEA2 NA 0 NA 1.501 1 NA NA NA NA NA LTS-039 chr20 62701071 62842768 141698 * c(RGS19, LKAAEAR1, NPBWR2, MYT1, OPRL1, TCEA2) 0.271451709299779 4 0.0401414166831881 1.32065808609819 253 0.494729880238858 8 6 2 -6.75578353298143 LTS-039 chr20 62842769 62843386 618 * MYT1 NA 0 NA 1.849 1 NA NA NA NA NA LTS-039 chr20 62843387 62872271 28885 * MYT1 0.250422904754943 4 0.0472440472440709 1.90131261229441 80 0.652531578240675 9 7 2 -6.73408852758432 LTS-039 chr20 62872272 62959313 87042 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 2.65042934630274 125 1.5151745129767 14 NA NA -5.76441685860049 LTS-039 chr21 9825764 9825781 18 * character(0) 0.227 1 NA 0.634 1 NA NA NA NA NA LTS-039 chr21 9825782 11059877 1234096 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.219997984329931 34 0.119073712546506 0.788270118668515 195 0.769927386437148 5 4 1 -6.88097273713282 LTS-039 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 3.06068156927029 7 0.818247197484034 16 NA NA -5.764410176617 LTS-039 chr21 14745307 14756794 11488 * character(0) 0.303 1 NA 1.42632606668562 9 0.759353343312585 7 7 0 -5.76441040463692 LTS-039 chr21 14756795 17102393 2345599 * c(MIR3156-3, SAMSN1-AS1, LIPI, ABCC13, POTED, LOC388813, ANKRD20A11P, RBM11, NA, SAMSN1, HSPA13, NRIP1) 0.244699484379695 29 0.0969773855107087 1.44761932474954 619 0.819058220973983 8 6 2 -6.82080067547603 LTS-039 chr21 17102394 18821453 1719060 * c(LINC01549, USP25, MIR99AHG, MIRLET7C, MIR125B2, MIR99A) 0.223320846343657 4 0.0814964211893177 0.775163149426217 228 0.399177702270303 4 3 1 -7.31808536569167 LTS-039 chr21 18821454 19190732 369279 * c(LINC01549, BTG3, CXADR, C21orf91-OT1, C21orf91) 0.235234461599119 20 0.0642138491374924 1.52024999581289 325 1.07873879211533 10 8 2 -6.75875785246612 LTS-039 chr21 19190733 19506602 315870 * c(CHODL, CHODL-AS1, C21orf91) NA 0 NA 0.333 1 NA NA NA NA NA LTS-039 chr21 19506603 19716301 209699 * c(CHODL, TMPRSS15) 0.248520472549479 6 0.210555139254939 0.626577463464825 150 0.429005737825554 4 3 1 -6.8493448728365 LTS-039 chr21 19716302 19756040 39739 * TMPRSS15 0.338 1 NA 0.675922909243965 33 0.235317886221506 3 3 0 -5.7655275959248 LTS-039 chr21 19756041 30248337 10492297 * c(MIR4759, RNU6-67P, ADAMTS5, MIR155HG, CYYR1, LINC00161, LINC00314, GABPA, D21S2088E, LINC00515, N6AMT1, LOC339622, APP, LINC00317, LINC00320, MIR155, NCAM2, ATP5J, LINC00158, LINC00113, LINC00308, MRPL39, TMPRSS15, JAM2, ADAMTS1) 0.374601334442167 35 0.0982666155471554 0.686806317607353 1264 0.373691821159541 3 2 1 -6.78842335505564 LTS-039 chr21 30248338 30248403 66 * N6AMT1 NA 0 NA 1.28 1 NA NA NA NA NA LTS-039 chr21 30248404 30464113 215710 * c(RWDD2B, USP16, CCT8, LTN1, N6AMT1, MAP3K7CL) 0.355399183211191 11 0.0541746334467609 0.990248939790764 526 0.457806465561016 6 4 2 -6.76701306989587 LTS-039 chr21 30464114 30464701 588 * MAP3K7CL NA 0 NA 0.786 1 NA NA NA NA NA LTS-039 chr21 30464702 31234036 769335 * c(GRIK1-AS2, LINC00189, GRIK1, MAP3K7CL, BACH1, GRIK1-AS1) 0.40856972867404 9 0.0557160459632391 0.651071603854296 322 0.276856853960308 3 2 1 -7.03908836701201 LTS-039 chr21 31234037 31311665 77629 * GRIK1 NA 0 NA 0.306 1 NA NA NA NA NA LTS-039 chr21 31311666 32491270 1179605 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, MIR4327, KRTAP13-1, KRTAP15-1, CLDN17, LINC00307, KRTAP13-4, GRIK1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, KRTAP24-1, KRTAP27-1, TIAM1, KRTAP19-8, CLDN8) 0.32831854391716 21 0.128439998961902 0.403918146729971 565 0.288100425099603 1 1 0 -7.1577652058387 LTS-039 chr21 32491271 33697624 1206354 * c(LINC00159, HUNK, MIS18A, MRAP, SCAF4, SOD1, TIAM1, URB1) 0.383481388571875 25 0.0701646872246526 0.904117163080494 774 0.763409310950692 3 2 1 -6.82221596295979 LTS-039 chr21 33697625 33956530 258906 * c(TCP10L, C21orf59, EVA1C, SNORA80A, URB1-AS1, URB1) 0.297846228656226 6 0.156609067425868 1.25677810308389 264 0.608863867943546 7 5 2 -6.74445383942003 LTS-039 chr21 33956531 34602934 646404 * c(PAXBP1-AS1, OLIG2, OLIG1, TCP10L, IFNAR2, C21orf62-AS1, C21orf62, C21orf59, LINC01548, SYNJ1, PAXBP1) 0.338918594163163 9 0.131837125946289 0.802037783619351 677 0.384001002193045 3 2 1 -6.80635794070325 LTS-039 chr21 34602935 34602956 22 * IFNAR2 NA 0 NA 1.333 1 NA NA NA NA NA LTS-039 chr21 34602957 34787324 184368 * c(IL10RB-AS1, IFNAR1, IFNAR2, IFNGR2, IL10RB) 0.368609934593197 5 0.0472260521322712 1.20062781108411 334 0.604795280302836 6 4 2 -6.78384746158047 LTS-039 chr21 34787325 35751865 964541 * c(LINC00649, LINC00310, GART, DONSON, IFNGR2, ATP5O, SMIM11A, DNAJC28, ITSN1, MRPS6, SLC5A3, SON, TMEM50B, CRYZL1, KCNE2) 0.35162479652368 19 0.0662924585339806 0.916003913355222 1550 1.10440831167569 6 4 2 -6.78060506080267 LTS-039 chr21 35751866 35822008 70143 * c(KCNE1, SMIM11A) 0.360638653302038 6 0.0329813078374201 0.608937179024704 176 0.263622943484001 3 2 1 -6.80773460817854 LTS-039 chr21 35822009 36161834 339826 * c(LINC01426, RCAN1, KCNE1, LINC00160, CLIC6, RUNX1) 0.347700448631705 2 0.0608111831820431 0.973585173798185 215 0.367105660312551 6 4 2 -6.83598392774308 LTS-039 chr21 36161835 36161893 59 * RUNX1 NA 0 NA 1.91 1 NA NA NA NA NA LTS-039 chr21 36161894 36410831 248938 * c(RUNX1-IT1, RUNX1) NA 0 NA 1.63110892587432 179 0.749488114144155 8 NA NA -5.76444114721864 LTS-039 chr21 36410832 36411003 172 * c(RUNX1-IT1, RUNX1) NA 0 NA 0.856 1 NA NA NA NA NA LTS-039 chr21 36411004 38391000 1979997 * c(LOC100133286, LOC100506403, CBR3-AS1, MORC3, CLDN14, HLCS, RIPPLY3, SETD4, SIM2, MIR802, RUNX1-IT1, CHAF1B, RUNX1, CBR1, CBR3, DOPEY2) 0.366881146886023 26 0.0578080776894877 0.876364349794908 1071 0.43812885626273 3 2 1 -6.99453146517219 LTS-039 chr21 38391001 38391319 319 * RIPPLY3 NA 0 NA 8.289 1 NA NA NA NA NA LTS-039 chr21 38391320 38519965 128646 * c(PIGP, RIPPLY3, TTC3) 0.308456226126197 13 0.0428961178089221 1.17341407015287 291 1.04438175924105 7 5 2 -6.73791174803279 LTS-039 chr21 38519966 38529257 9292 * TTC3 0.312 1 NA 2.33599414451014 40 1.33016802100433 12 12 0 -5.76441013481842 LTS-039 chr21 38529258 38529446 189 * TTC3 NA 0 NA 1.168 1 NA NA NA NA NA LTS-039 chr21 38529447 39947722 1418276 * c(DSCR4, DSCR3, DYRK1A, ERG, DSCR9, DSCR10, KCNJ6, KCNJ15, TTC3, DSCR8) 0.367475677112657 16 0.0660776058888335 0.919997933568684 757 0.40038295482215 5 3 2 -7.06295492756287 LTS-039 chr21 39947723 40177207 229485 * c(ERG, LINC00114) NA 0 NA 2.067 1 NA NA NA NA NA LTS-039 chr21 40177208 40558872 381665 * c(ETS2, BRWD1, PSMG1) 0.356207739504004 19 0.102553651626787 1.36998013066793 255 0.545855239060861 6 4 2 -6.73928436730487 LTS-039 chr21 40558873 40684975 126103 * BRWD1 0.354793402847848 11 0.042192416380198 0.97857438745725 380 0.392115148454215 6 4 2 -6.76288662597669 LTS-039 chr21 40684976 40684984 9 * BRWD1 NA 0 NA 2.437 1 NA NA NA NA NA LTS-039 chr21 40684985 40752141 67157 * c(BRWD1-AS1, NA, HMGN1, BRWD1) 0.350899035296648 5 0.0650407564531656 1.75183381505727 75 0.802654464380028 9 6 3 -6.73401750555113 LTS-039 chr21 40752142 43291817 2539676 * c(MIR3197, DSCAM-AS1, MIR4760, DSCAM-IT1, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, LINC00479, DSCAM, PLAC4, BACE2, LINC00323, MX1, MX2, PCP4, LINC00112, LINC00111, FAM3B, RIPK4, PRDM15, SH3BGR, TMPRSS2, WRB) 0.390272471626451 43 0.0545131579105638 0.90054192430707 1451 0.660672509069808 5 3 2 -6.89387162220503 LTS-039 chr21 43291818 43298727 6910 * PRDM15 NA 0 NA 3.437 1 NA NA NA NA NA LTS-039 chr21 43298728 43308373 9646 * c(C2CD2, PRDM15) 0.405127938733786 4 0.0262979720384164 2.06210100567811 76 0.628707245485779 17 10 7 -6.74073432265752 LTS-039 chr21 43308374 44592918 1284545 * c(WDR4, CRYAA, UMODL1-AS1, C2CD2, NDUFV3, ZBTB21, PDE9A, PKNOX1, UBASH3A, SLC37A1, TMPRSS3, TFF1, TFF2, TFF3, U2AF1, CBS, RSPH1, UMODL1, ABCG1) 0.335400180446078 69 0.06358425078584 1.00185945052073 1714 0.447040544428909 6 4 2 -6.97539785404206 LTS-039 chr21 44592919 44834441 241523 * SIK1 NA 0 NA 5.971 1 NA NA NA NA NA LTS-039 chr21 44834442 44837520 3079 * SIK1 0.288 1 NA 3.62645673837325 62 1.56525761974888 19 19 0 -5.76441017906691 LTS-039 chr21 44837521 44837551 31 * SIK1 0.315 1 NA 0.686 1 NA NA NA NA NA LTS-039 chr21 44837552 45166098 328547 * c(HSF2BP, LINC00313, SIK1, RRP1B, LINC00319, PDXK) 0.320055843159594 6 0.0346568896469374 1.04318318587709 365 0.372690192886197 7 5 2 -6.91384333365137 LTS-039 chr21 45166099 45168876 2778 * PDXK NA 0 NA 2.869 1 NA NA NA NA NA LTS-039 chr21 45168877 45213281 44405 * c(CSTB, PDXK, RRP1) 0.390140820206443 9 0.0356195171219375 1.71434596930562 236 0.622953432169115 13 8 5 -6.74451727512739 LTS-039 chr21 45213282 45215022 1741 * RRP1 NA 0 NA 0.715 1 NA NA NA NA NA LTS-039 chr21 45215023 45857013 641991 * c(ICOSLG, AATBC, DNMT3L, AIRE, PFKL, AGPAT3, PWP2, TRAPPC10, TRPM2, C21orf2, C21orf33, RRP1) 0.360225254264008 44 0.0624402462773787 0.847642384430117 1352 0.432612418301967 3 2 1 -6.81396500942575 LTS-039 chr21 45857014 45863000 5987 * TRPM2 NA 0 NA 0.356538262743091 41 0.090759263452493 1 NA NA -5.76454517623198 LTS-039 chr21 45863001 45876367 13367 * c(LRRC3-AS1, LRRC3) NA 0 NA 0.822 1 NA NA NA NA NA LTS-039 chr21 45876368 46131515 255148 * c(TSPEAR-AS2, KRTAP12-2, KRTAP12-1, KRTAP10-10, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, TSPEAR, LRRC3) 0.312873400672069 33 0.0925731999473112 0.668328468180469 532 0.243074236787871 4 3 1 -6.95747791674932 LTS-039 chr21 46131516 46188936 57421 * UBE2G2 NA 0 NA 1.282 1 NA NA NA NA NA LTS-039 chr21 46188937 46396923 207987 * c(ITGB2-AS1, ITGB2, SUMO3, UBE2G2, PTTG1IP, LINC01547, FAM207A) 0.354689501323021 21 0.0616343287153391 0.928946919515681 404 0.308560741506716 6 4 2 -6.84795907515719 LTS-039 chr21 46396924 46554573 157650 * c(ADARB1, PICSAR, LINC00163, SSR4P1) NA 0 NA 0.614 1 NA NA NA NA NA LTS-039 chr21 46554574 46957916 403343 * c(COL18A1-AS2, ADARB1, POFUT2, COL18A1-AS1, LOC642852, SLC19A1, COL18A1) 0.374498006515322 17 0.0630594957163471 0.698278279501541 733 0.448193890627674 3 2 1 -6.73514673173153 LTS-039 chr21 46957917 47316187 358271 * c(LOC100129027, PCBP3, SLC19A1) NA 0 NA 0.632638391196787 10 0.154277383666923 3 NA NA -5.8858233982702 LTS-039 chr21 47316188 47320425 4238 * PCBP3 0.236 1 NA 1.43434129760423 7 0.70917285823496 7 7 0 -5.76441013831321 LTS-039 chr21 47320426 47700612 380187 * c(FTCD, MCM3AP-AS1, COL6A1, COL6A2, LSS, PCBP3, SPATC1L, MCM3AP) 0.255525375271803 47 0.0925430219725868 1.18993268810857 922 0.664685442641111 5 4 1 -6.74305408025776 LTS-039 chr21 47700613 47703481 2869 * MCM3AP NA 0 NA 2.398 1 NA NA NA NA NA LTS-039 chr21 47703482 47746460 42979 * c(PCNT, C21orf58, YBEY, MCM3AP) 0.217527487769048 4 0.0167531091641721 1.96882294808758 165 0.88174577480253 15 12 3 -6.73792719199442 LTS-039 chr21 47746461 47754266 7806 * PCNT NA 0 NA 0.933 1 NA NA NA NA NA LTS-039 chr21 47754267 48084820 330554 * c(DIP2A-IT1, DIP2A, PRMT2, PCNT, S100B) 0.251231688076166 16 0.105972008882849 1.12343661476743 664 0.548799527022309 5 4 1 -6.73517899016912 LTS-039 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 1.26146637081124 5 0.224610329237103 6 NA NA -5.76441023518347 LTS-039 chr22 16157787 16157883 97 * character(0) 0.456 1 NA 0.751 1 NA NA NA NA NA LTS-039 chr22 16157884 17451132 1293249 * c(GAB4, CCT8L2, XKR3, ANKRD62P1-PARP4P3, POTEH, HSFY1P1, TPTEP1, OR11H1) 0.260891066148388 4 0.187719649122479 0.461826166712448 291 0.288821393791308 2 2 0 -7.07627338637135 LTS-039 chr22 17451133 17468902 17770 * GAB4 NA 0 NA 0.944 1 NA NA NA NA NA LTS-039 chr22 17468903 18389606 920704 * c(CECR7, CECR5-AS1, MIR3198-1, GAB4, IL17RA, BCL2L13, CECR6, CECR5, CECR3, CECR2, CECR1, ATP6V1E1, MICAL3, BID, SLC25A18) 0.11531655606218 48 0.052720997203195 0.697591849776983 1390 0.358003169836153 3 3 0 -6.73836807812656 LTS-039 chr22 18389607 18593684 204078 * c(FLJ41941, TUBA8, PEX26, MICAL3, MIR648) NA 0 NA 1.15523283214077 117 0.3582011367607 5 NA NA -5.76971657433074 LTS-039 chr22 18593685 18603882 10198 * TUBA8 NA 0 NA 0.613 1 NA NA NA NA NA LTS-039 chr22 18603883 19137445 533563 * c(USP18, TSSK2, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, GSC2, TUBA8, PRODH, DGCR6, DGCR14, DGCR2) 0.11873625109391 20 0.0551001719359243 0.583067949534542 554 0.359365240892815 3 3 0 -6.82946805555043 LTS-039 chr22 19137446 19163016 25571 * GSC2 NA 0 NA 1.488 1 NA NA NA NA NA LTS-039 chr22 19163017 19808988 645972 * c(SEPT5-GP1BB, C22orf39, LINC00895, GNB1L, MRPL40, SLC25A1, TBX1, CLDN5, HIRA, UFD1L, CLTCL1, CDC45) 0.098667711766394 13 0.0522209310624164 0.856035025942888 1058 0.565119290506105 4 4 0 -6.73754227941874 LTS-039 chr22 19808989 19833621 24633 * GNB1L NA 0 NA 1.643 1 NA NA NA NA NA LTS-039 chr22 19833622 19863463 29842 * c(TXNRD2, GNB1L, C22orf29) NA 0 NA 1.54703271569597 137 0.399007960461703 8 NA NA -5.76460965959355 LTS-039 chr22 19863464 20236684 373221 * c(MIR1286, MIR1306, MIR3618, MIR4761, TXNRD2, TANGO2, COMT, LINC00896, TRMT2A, LOC284865, ZDHHC8, CCDC188, MIR185, ARVCF, DGCR8, RANBP1, RTN4R) 0.0835041753681416 30 0.0544179758163975 0.910931466165105 938 0.533420156793382 5 5 0 -6.75748741983841 LTS-039 chr22 20236685 20236757 73 * c(MIR1286, RTN4R) NA 0 NA 0.694 1 NA NA NA NA NA LTS-039 chr22 20236758 20385740 148983 * c(RTN4R, TMEM191B, PI4KAP1, NA, DGCR6L) 0.046011113855951 2 0.0360624458405139 0.568941339415642 91 0.239207651144984 5 5 0 -7.7740597286066 LTS-039 chr22 20385741 20721039 335299 * c(PI4KAP1, RIMBP3) 0.144909596204378 2 0.0940452018978108 0.2512001893403 39 0.164262100883845 1 1 0 -8.04658169686082 LTS-039 chr22 20721040 20721803 764 * character(0) NA 0 NA 0.829 1 NA NA NA NA NA LTS-039 chr22 20721804 22040132 1318329 * c(MIR301B, TUBA3FP, CRKL, AIFM3, YDJC, CCDC116, HIC2, SDF2L1, PPIL2, POM121L4P, POM121L8P, SERPIND1, PI4KAP2, LRRC74B, BCRP2, MIR130B, THAP7-AS1, P2RX6P, MED15, PI4KA, TMEM191C, SLC7A4, UBE2L3, ZNF74, THAP7, LZTR1, TMEM191A, KLHL22, SCARF2, P2RX6, SNAP29) 0.0789165607548603 33 0.0428966340418594 0.824990490481338 1898 0.410686970065126 4 4 0 -6.8475750290259 LTS-039 chr22 22040133 22040690 558 * PPIL2 NA 0 NA 0.336 1 NA NA NA NA NA LTS-039 chr22 22040691 22300447 259757 * c(PPIL2, YPEL1, MAPK1, PPM1F) 0.11289807705794 9 0.0507168063312788 0.677044761115496 355 0.316679921439038 3 3 0 -6.74685419454778 LTS-039 chr22 22300448 22300536 89 * PPM1F NA 0 NA 0.587 1 NA NA NA NA NA LTS-039 chr22 22300537 22312483 11947 * c(TOP3B, PPM1F) 0.341 1 NA 0.254818176225044 40 0.221082737732001 1 1 0 -5.77922997414686 LTS-039 chr22 22312484 23465346 1152863 * c(IGLL5, ZNF280A, ZNF280B, PRAME, POM121L1P, RSPH14, GNAZ, LL22NC03-63E9.3, MIR650, VPREB1, TOP3B, GGTLC2, BMS1P20) 0.152679336473514 35 0.0947943195830324 0.584226558079506 949 0.271253453622179 2 2 0 -6.8219607257525 LTS-039 chr22 23465347 23627371 162025 * c(FBXW4P1, RSPH14, GNAZ, BCR, RAB36) NA 0 NA 0.829464104933842 322 0.37743647123241 4 NA NA -5.76798225569352 LTS-039 chr22 23627372 24227234 599863 * c(ZDHHC8P1, C22orf15, RGL4, VPREB3, IGLL1, CHCHD10, MMP11, DRICH1, BCR, CES5AP1, SMARCB1, SLC2A11, ZNF70, GUSBP11, DERL3) 0.168031867078868 16 0.10779948592951 0.536811716685684 722 0.249804597292112 2 2 0 -6.73704042383715 LTS-039 chr22 24227235 24238374 11140 * c(MIF-AS1, MIF, SLC2A11) 0.0823324317427439 3 0.0149331845230681 1.44283562641188 62 0.367906899967766 5 5 0 -6.76244151302903 LTS-039 chr22 24238375 24284766 46392 * MIF-AS1 NA 0 NA 0.014 1 NA NA NA NA NA LTS-039 chr22 24284767 24340955 56189 * c(DDTL, DDT, GSTTP1) NA 0 NA 0.645422809664556 43 0.472465869439434 3 NA NA -5.7658343869836 LTS-039 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.414 1 NA NA NA NA NA LTS-039 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 2.15580673529438 57 0.857530194124141 11 NA NA -5.76441013957646 LTS-039 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.824 1 NA NA NA NA NA LTS-039 chr22 24400149 24479407 79259 * c(CABIN1, GSTTP2) NA 0 NA 0.917059354115437 104 0.220186277136617 4 NA NA -5.7651801576502 LTS-039 chr22 24479408 26343895 1864488 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB2P1, CRYBB3, GRK3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, SNRPD3, TOP1P2, GUCD1, MYO18B, KIAA1671, IGLL3P, LRP5L) 0.165739312028821 35 0.10831104446427 0.55901675663298 1796 0.283509768264874 2 2 0 -6.77182131351656 LTS-039 chr22 26343896 26346301 2406 * MYO18B NA 0 NA 0.175 1 NA NA NA NA NA LTS-039 chr22 26346302 26778385 432084 * c(SEZ6L, MYO18B) 0.234288445975757 9 0.0587835010866144 0.310536729282926 210 0.157803513497579 1 1 0 -6.89223347969347 LTS-039 chr22 26778386 26778390 5 * SEZ6L NA 0 NA 0.446 1 NA NA NA NA NA LTS-039 chr22 26778391 29182933 2404543 * c(MIR548J, MIR3199-2, MIR3199-1, CHEK2, CRYBA4, CRYBB1, HSCB, CCDC117, TTC28, SEZ6L, PITPNB, TFIP11, TTC28-AS1, SRRD, MN1, MIAT, ASPHD2, TPST2, HPS4) 0.121724445001572 6 0.0402214702201034 0.641006073384914 1226 0.365080505386128 3 3 0 -6.84974412544069 LTS-039 chr22 29182934 29440866 257933 * c(ZNRF3-AS1, CCDC117, XBP1, ZNRF3) 0 1 NA 1.09179947108269 134 0.50300840031868 5 5 0 -5.76461110782181 LTS-039 chr22 29440867 29442656 1790 * ZNRF3 NA 0 NA 0.51 1 NA NA NA NA NA LTS-039 chr22 29442657 29449710 7054 * ZNRF3 NA 0 NA 0.354302624593969 49 0.106413737381042 1 NA NA -5.76445792677401 LTS-039 chr22 29449711 29449788 78 * ZNRF3 NA 0 NA 1.035 1 NA NA NA NA NA LTS-039 chr22 29449789 29656520 206732 * c(EMID1, C22orf31, RHBDD3, KREMEN1, ZNRF3) 0.140161996062427 9 0.0759672809687024 0.620989723119414 385 0.265690465271223 3 3 0 -6.80941633079049 LTS-039 chr22 29656521 29709948 53428 * c(RASL10A, GAS2L1, EWSR1, RHBDD3) 0.0583982567559024 3 0.0456216322958017 0.862354402153766 237 0.371317631773499 6 6 0 -6.79097919115751 LTS-039 chr22 29709949 29966579 256631 * c(MIR3653, RASL10A, RFPL1S, AP1B1, NEFH, RFPL1, NIPSNAP1, THOC5) 0.106763489448758 3 0.0277908857961263 0.547477042264964 510 0.23598443472878 3 3 0 -7.0395045943654 LTS-039 chr22 29966580 29976072 9493 * NIPSNAP1 NA 0 NA 1.247 1 NA NA NA NA NA LTS-039 chr22 29976073 30061058 84986 * c(NF2, NIPSNAP1) NA 0 NA 1.05313321819265 67 0.61211367051836 5 NA NA -5.76445388844457 LTS-039 chr22 30061059 30064257 3199 * NF2 NA 0 NA 0.666 1 NA NA NA NA NA LTS-039 chr22 30064258 30210861 146604 * c(CABP7, UQCR10, NF2, ZMAT5, ASCC2) 0.121460779318285 9 0.0752492155736154 0.522130444889093 323 0.342662082903024 3 3 0 -6.80418950558342 LTS-039 chr22 30210862 30211981 1120 * ASCC2 NA 0 NA 0.894 1 NA NA NA NA NA LTS-039 chr22 30211982 30765553 553572 * c(SF3A1, HORMAD2, LIF, OSM, CCDC157, GATSL3, TBC1D10A, ASCC2, KIAA1656, MTMR3) 0.114713684587252 12 0.0545757744014242 0.870405132954672 732 0.413641518412862 4 4 0 -6.80911533834575 LTS-039 chr22 30765554 30766288 735 * c(CCDC157, KIAA1656) NA 0 NA 0.612 1 NA NA NA NA NA LTS-039 chr22 30766289 30818599 52311 * c(RNF215, SEC14L2, MTFP1, CCDC157, KIAA1656) 0.13222546155106 3 0.0165227116418583 0.632971806969115 221 0.262374997131403 3 3 0 -7.07716212777389 LTS-039 chr22 30818600 30823396 4797 * c(SEC14L2, MTFP1) 0.0799217299306194 3 0.0273007936392577 1.36051396858877 71 0.555378904863884 5 5 0 -6.73389653547963 LTS-039 chr22 30823397 31602790 779394 * c(MIR3200, MIR3928, SELENOM, DUSP18, MORC2-AS1, MORC2, PES1, OSBP2, SEC14L3, INPP5J, SEC14L4, SLC35E4, SDC4P, PLA2G3, MTFP1, TUG1, SMTN, TCN2, SEC14L6, RNF185, GAL3ST1) 0.102292554199547 19 0.039653101026939 0.609890767816471 1400 0.308848069065761 3 3 0 -6.95723932646708 LTS-039 chr22 31602791 31602907 117 * RNF185 NA 0 NA 1.917 1 NA NA NA NA NA LTS-039 chr22 31602908 31796749 193842 * c(PIK3IP1, PATZ1, LIMK2, DRG1, RNF185) 0.14 1 NA 0.863151529660862 376 0.337021920609967 4 4 0 -5.76549559622022 LTS-039 chr22 31796750 31799105 2356 * DRG1 NA 0 NA 0.538 1 NA NA NA NA NA LTS-039 chr22 31799106 32757158 958053 * c(RFPL3S, RFPL3, RFPL2, C22orf42, PISD, AP1B1P1, PRR14L, C22orf24, DRG1, EIF4ENIF1, SLC5A1, SLC5A4, YWHAH, DEPDC5, SFI1) 0.184255070465347 51 0.0794976285254879 0.561428964314439 1470 0.291051432865528 2 2 0 -6.80937907910454 LTS-039 chr22 32757159 32758665 1507 * RFPL3S NA 0 NA 1.168 1 NA NA NA NA NA LTS-039 chr22 32758666 35485770 2727105 * c(LARGE-AS1, MIR4764, RFPL3S, BPIFC, FBXO7, LOC339666, RTCB, TIMP3, SYN3, ISX, LARGE1) 0.0932515619833648 17 0.0481414124038264 0.739659970957286 768 0.371556313737182 3 3 0 -6.92400849584855 LTS-039 chr22 35485771 35485956 186 * character(0) NA 0 NA 3.741 1 NA NA NA NA NA LTS-039 chr22 35485957 36424424 938468 * c(HMGXB4, TOM1, MIR3909, RBFOX2, RASD2, HMOX1, MB, MCM5, APOL6, APOL5) 0.0928042024383548 19 0.0453119789746209 0.908373527530465 804 0.430195867376608 4 4 0 -6.73589630227927 LTS-039 chr22 36424425 36536388 111964 * c(RBFOX2, APOL3) NA 0 NA 0.594 1 NA NA NA NA NA LTS-039 chr22 36536389 36627611 91223 * c(APOL2, APOL4, APOL3) 0.0848439378311354 21 0.0216423306552339 0.601925822917097 220 0.316881470612595 5 5 0 -6.94889514797132 LTS-039 chr22 36627612 36629194 1583 * APOL2 NA 0 NA 0.788 1 NA NA NA NA NA LTS-039 chr22 36629195 36922220 293026 * c(APOL2, TXN2, MYH9, FOXRED2, APOL1, EIF3D) 0.12318985444968 7 0.043089055068157 1.01292778041093 556 0.461350118868156 3 3 0 -6.83903044763884 LTS-039 chr22 36922221 36960348 38128 * c(CACNG2, EIF3D) NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr22 36960349 37709572 749224 * c(LL22NC01-81G9.3, CACNG2, IFT27, C1QTNF6, CSF2RB, TMPRSS6, CYTH4, TEX33, IL2RB, MPST, NCF4, PVALB, RAC2, SSTR3, TST, KCTD17) 0.129418704363208 25 0.0634812833308632 0.685837118456016 1072 0.307912286119137 3 3 0 -6.75400789744371 LTS-039 chr22 37709573 37709640 68 * CYTH4 NA 0 NA 0.206 1 NA NA NA NA NA LTS-039 chr22 37709641 37876362 166722 * c(ELFN2, CYTH4, CARD10, MFNG) 0.18655360803556 9 0.0561248608016091 0.513891750326852 256 0.17233804768756 2 2 0 -6.86731133643672 LTS-039 chr22 37876363 37876701 339 * c(CARD10, MFNG) NA 0 NA 1.118 1 NA NA NA NA NA LTS-039 chr22 37876702 38131283 254582 * c(TRIOBP, CDC42EP1, SH3BP1, GGA1, CARD10, LGALS1, LGALS2, MFNG, PDXP, NOL12) 0.105075024048907 11 0.0268192603789278 0.945907333717606 687 0.440640758878863 4 4 0 -6.81437487764246 LTS-039 chr22 38131284 38212782 81499 * c(TRIOBP, GCAT, H1F0) 0.063 1 NA 1.44605243311105 226 1.13144265087206 7 7 0 -5.76441321681084 LTS-039 chr22 38212783 38212868 86 * GCAT NA 0 NA 0.779 1 NA NA NA NA NA LTS-039 chr22 38212869 38611386 398518 * c(MIR4534, ANKRD54, GCAT, SLC16A8, MAFF, EIF3L, POLR2F, SOX10, MIR658, MIR659, BAIAP2L2, PLA2G6, C22orf23, GALR3, MICALL1, PICK1) 0.097791843732825 6 0.0334105771675179 0.778919069270314 974 0.355203315043134 4 4 0 -6.77082149164993 LTS-039 chr22 38611387 38616456 5070 * c(MAFF, TMEM184B) 0.031 1 NA 1.79058418459803 45 0.580837306625252 9 9 0 -5.76441016846164 LTS-039 chr22 38616457 38878826 262370 * c(KDELR3, CSNK1E, TMEM184B, KCNJ4, LOC400927) NA 0 NA 0.768158505472111 236 0.27427531117779 3 NA NA -5.77678154680653 LTS-039 chr22 38878827 38964422 85596 * c(DDX17, KDELR3, DMC1) NA 0 NA 1.22724489652943 215 0.473431700006184 6 NA NA -5.76450635716378 LTS-039 chr22 38964423 38978099 13677 * c(DMC1, FAM227A) NA 0 NA 0.604 1 NA NA NA NA NA LTS-039 chr22 38978100 39069847 91748 * c(CBY1, FAM227A) 0.067 1 NA 0.716965284695571 124 0.193954130556767 3 3 0 -5.76450378000723 LTS-039 chr22 39069848 39077916 8069 * CBY1 NA 0 NA 1.346 1 NA NA NA NA NA LTS-039 chr22 39077917 39120415 42499 * c(TOMM22, GTPBP1, JOSD1) 0.135 1 NA 1.2805328609558 158 0.626418052416123 6 6 0 -5.76444161951874 LTS-039 chr22 39120416 39121960 1545 * GTPBP1 NA 0 NA 0.572 1 NA NA NA NA NA LTS-039 chr22 39121961 39626283 504323 * c(APOBEC3A_B, DNAL4, APOBEC3D, APOBEC3H, APOBEC3A, APOBEC3F, CBX6, NPTXR, CBX7, SUN2, APOBEC3C, PDGFB, APOBEC3G, GTPBP1, APOBEC3B) 0.103591619581158 30 0.0469410121395955 0.786314629882779 1011 0.489371713170288 4 4 0 -6.77160419885119 LTS-039 chr22 39626284 39627661 1378 * PDGFB NA 0 NA 1.632 1 NA NA NA NA NA LTS-039 chr22 39627662 39746134 118473 * c(TAB1, SNORD43, PDGFB, RPL3, SYNGR1) 0.0605383641614149 5 0.0273221521846285 1.44881877489136 121 0.687362507463614 7 7 0 -6.73422848127309 LTS-039 chr22 39746135 39760140 14006 * c(TAB1, SYNGR1) NA 0 NA 0.661 1 NA NA NA NA NA LTS-039 chr22 39760141 39910140 150000 * c(LOC100506472, TAB1, MGAT3, MIEF1, SYNGR1) 0.0666489622495664 9 0.0219658826364888 0.854585015557205 389 0.420969452439998 6 6 0 -6.80822290893836 LTS-039 chr22 39910141 39928901 18761 * c(ATF4, MIEF1, RPS19BP1) 0.094 1 NA 1.45322415308217 136 0.644554190565202 7 7 0 -5.76441539203753 LTS-039 chr22 39928902 39966816 37915 * CACNA1I NA 0 NA 0.548 1 NA NA NA NA NA LTS-039 chr22 39966817 40232007 265191 * c(ENTHD1, CACNA1I) 0.124443907876016 6 0.0332711085878825 0.614819001868603 377 0.241404760418298 3 3 0 -6.80382913511907 LTS-039 chr22 40232008 40257764 25757 * ENTHD1 NA 0 NA 1.429 1 NA NA NA NA NA LTS-039 chr22 40257765 40802761 544997 * c(LOC100130899, FAM83F, ENTHD1, ADSL, TNRC6B, SGSM3, GRAP2) 0.118987935492637 15 0.032260546448299 0.89907428923829 807 0.414153888622965 3 3 0 -6.83606748986495 LTS-039 chr22 40802762 41221867 419106 * c(MIR4766, SLC25A17, SGSM3, MCHR1, MKL1, ST13) 0.120787912925671 4 0.0527699409386316 0.723159375411563 375 0.293319762682359 3 3 0 -6.7342106577909 LTS-039 chr22 41221868 41222102 235 * ST13 NA 0 NA 0.931 1 NA NA NA NA NA LTS-039 chr22 41222103 41266169 44067 * c(DNAJB7, XPNPEP3, ST13) 0.088 1 NA 1.14257257788226 119 0.558586576964795 5 5 0 -5.76475267986409 LTS-039 chr22 41266170 42463973 1197804 * c(MIR1281, TOB2, TNFRSF13C, CHADL, MEI1, WBP2NL, POLR3H, EP300, ZC3H7B, XRCC6, CSDC2, DESI1, LINC00634, MIR33A, SHISA8, NAGA, SNU13, ACO2, PMM1, SEPT3, RANGAP1, XPNPEP3, SREBF2, TEF, CENPM, C22orf46, CCDC134, L3MBTL2, PHF5A, RBX1) 0.120262052572431 44 0.0629712298816836 0.598484541023403 2549 0.307750424625894 3 3 0 -6.95113750504293 LTS-039 chr22 42463974 42464359 386 * NAGA NA 0 NA 0.801 1 NA NA NA NA NA LTS-039 chr22 42464360 42526938 62579 * c(NDUFA6-AS1, FAM109B, CYP2D6, NAGA, NDUFA6, SMDT1) 0.134290928577456 12 0.0732456948781416 0.871818614384424 184 0.357330458130722 3 3 0 -6.76966243786317 LTS-039 chr22 42526939 42536170 9232 * NDUFA6-AS1 NA 0 NA 0.433 1 NA NA NA NA NA LTS-039 chr22 42536171 42999212 463042 * c(NFAM1, CYP2D7, SERHL2, RRP7A, OGFRP1, TCF20, POLDIP3, RRP7BP, SERHL) 0.208679681629924 45 0.0960085591723125 0.554752653726453 642 0.30046548533579 2 2 0 -6.88905320180666 LTS-039 chr22 42999213 43010748 11536 * POLDIP3 NA 0 NA 1.513 1 NA NA NA NA NA LTS-039 chr22 43010749 43266506 255758 * c(PACSIN2, CYB5R3, ARFGAP3, RNU12, ATP5L2, A4GALT, POLDIP3) 0.125862978792255 8 0.0433812006683606 0.775985598350924 281 0.380215076733545 3 3 0 -6.75408405177791 LTS-039 chr22 43266507 45255727 1989221 * c(EFCAB6-AS1, PACSIN2, PNPLA5, TTLL12, ARHGAP8, TTLL1, SAMM50, SULT4A1, MCAT, PARVB, LINC00207, LINC00229, PRR5-ARHGAP8, PRR5, BIK, PARVG, EFCAB6, TSPO, MPPED1, SCUBE1, PNPLA3, LDOC1L, KIAA1644) 0.140625521507631 43 0.0617980582219215 0.579532934415372 1520 0.291260296242497 2 2 0 -6.89851450910575 LTS-039 chr22 45255728 45258113 2386 * c(ARHGAP8, PRR5-ARHGAP8) NA 0 NA 0.211 1 NA NA NA NA NA LTS-039 chr22 45258114 45312546 54433 * c(PHF21B, ARHGAP8, PRR5-ARHGAP8) 0.101139775250409 2 0.0014142135623731 0.299975219066254 105 0.179814244812147 14 13 1 -11.221791933837 LTS-039 chr22 45312547 45316273 3727 * PHF21B NA 0 NA 0.539 1 NA NA NA NA NA LTS-039 chr22 45316274 45973024 656751 * c(MIR1249, NUP50-AS1, NUP50, PHF21B, FBLN1, KIAA0930, RIBC2, SMC1B, FAM118A, UPK3A) 0.16255621953563 23 0.0572018822764459 0.57561009628843 780 0.344180021920057 2 2 0 -6.75595249426254 LTS-039 chr22 45973025 45996208 23184 * FBLN1 NA 0 NA 1.147 1 NA NA NA NA NA LTS-039 chr22 45996209 46508461 512253 * c(LINC00899, MIR3619, MIR4762, PRR34-AS1, FBLN1, ATXN10, MIRLET7BHG, PRR34, LOC730668, WNT7B) 0.0824698839138333 23 0.0397465289209614 0.83224254447534 412 0.420983289912175 4 4 0 -6.80319294669124 LTS-039 chr22 46508462 46508566 105 * MIRLET7BHG NA 0 NA 0.494 1 NA NA NA NA NA LTS-039 chr22 46508567 46805007 296441 * c(MIR4763, PKDREJ, CDPF1, GTSE1-AS1, MIRLET7BHG, MIRLET7A3, MIRLET7B, GTSE1, PPARA, TTC38, TRMU, CELSR1) 0.149711989083324 79 0.0606010252253019 0.624630908490823 967 0.268633978336247 2 2 0 -6.81511434633524 LTS-039 chr22 46805008 47064665 259658 * c(GRAMD4, CELSR1) 0.13 1 NA 0.738636270308866 179 0.334762137805961 3 3 0 -5.76639353540237 LTS-039 chr22 47064666 49246706 2182041 * c(MIR3201, MIR4535, GRAMD4, TBC1D22A, FAM19A5, LOC284933, LINC00898, CERK) 0.149720155042076 19 0.0924513148312942 0.598133442607039 544 0.294642090559185 2 2 0 -6.94836215020187 LTS-039 chr22 49246707 49575889 329183 * LINC01310 NA 0 NA 0.509 1 NA NA NA NA NA LTS-039 chr22 49575890 50312643 736754 * c(BRD1, C22orf34, ALG12, CRELD2, NA, ZBED4) 0.119858671560688 21 0.0521203278139017 0.478459731351222 414 0.221595607170292 2 2 0 -7.1658050913114 LTS-039 chr22 50312644 50312837 194 * CRELD2 NA 0 NA 1.139 1 NA NA NA NA NA LTS-039 chr22 50312838 50357714 44877 * c(PIM3, CRELD2) 0.108102409081077 12 0.0379337540584859 0.985027068132688 125 0.376243282310623 4 4 0 -6.8024496499318 LTS-039 chr22 50357715 50435346 77632 * c(IL17REL, PIM3) NA 0 NA 0.278 1 NA NA NA NA NA LTS-039 chr22 50435347 51021410 586064 * c(CHKB, KLHDC7B, CPT1B, TYMP, MLC1, PLXNB2, NCAPH2, CHKB-CPT1B, IL17REL, DENND6B, ODF3B, MOV10L1, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ADM2, TRABD, SELENOO, HDAC10, TUBGCP6, LMF2, PPP6R2, SCO2) 0.112702735467309 57 0.0591269078175933 0.660915905331338 2361 0.389417299045638 3 3 0 -6.75334125236422 LTS-039 chr22 51021411 51206426 185016 * c(CHKB-AS1, RABL2B, CHKB, MAPK8IP2, RPL23AP82, CHKB-CPT1B, ARSA, ACR, SHANK3) 0.14706007675651 13 0.0604171396975293 0.521159126532921 389 0.303675252965688 2 2 0 -6.76110312425719 LTS-039 chr22 51206427 51220846 14420 * c(RABL2B, RPL23AP82) NA 0 NA 0.391269632695413 57 0.203517244470813 1 NA NA -5.76696195571148 LTS-039 chrX 2699993 2700027 35 * XG 0.137 1 NA 1.267 1 NA NA NA NA NA LTS-039 chrX 2700028 2861139 161112 * c(ARSD, ARSE, XG, GYG2) 0.112030315888732 9 0.0442803568187972 0.697354641961838 303 0.364180476688277 3 3 0 -6.75019304394391 LTS-039 chrX 2861140 2861215 76 * ARSE NA 0 NA 0.658 1 NA NA NA NA NA LTS-039 chrX 2861216 10204576 7343361 * c(LINC01546, CLDN34, MIR4770, MIR4767, CLCN4, FAM9A, FAM9B, MXRA5, VCX, ARSH, SHROOM2, ANOS1, LOC389906, STS, ARSE, ARSF, VCX3B, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, PUDP, PNPLA4) 0.131748320874784 51 0.0764504966064482 0.54046625372346 1901 0.35860580406924 2 2 0 -6.82540404563084 LTS-039 chrX 10204577 10204586 10 * CLCN4 NA 0 NA 0.784 1 NA NA NA NA NA LTS-039 chrX 10204587 11793305 1588719 * c(MSL3, CLCN4, AMELX, HCCS, ARHGAP6, MID1) 0.169445252426338 4 0.0461988455844227 0.66379406817496 595 0.382858902848216 2 2 0 -7.0663966401212 LTS-039 chrX 11793306 11793409 104 * MSL3 NA 0 NA 0.437 1 NA NA NA NA NA LTS-039 chrX 11793410 12993243 1199834 * c(MSL3, TLR8-AS1, TLR7, TLR8, PRPS2, TMSB4X, FRMPD4) 0.186349342827245 9 0.05472151719794 0.39041871126331 515 0.177000093418485 1 1 0 -7.56437749490496 LTS-039 chrX 12993244 12993258 15 * TMSB4X 0.106 1 NA 0.501 1 NA NA NA NA NA LTS-039 chrX 12993259 12995384 2126 * TMSB4X NA 0 NA 1.09642509482137 39 0.41629083671004 5 NA NA -5.76441381129488 LTS-039 chrX 12995385 13053843 58459 * FAM9C NA 0 NA 0.394 1 NA NA NA NA NA LTS-039 chrX 13053844 13680865 627022 * c(GS1-600G8.3, LINC01203, TCEANC, FAM9C, EGFL6, ATXN3L) NA 0 NA 0.495720418500664 210 0.173939877472548 2 NA NA -5.82193962647485 LTS-039 chrX 13680866 13778433 97568 * c(TCEANC, TRAPPC2, OFD1, RAB9A) NA 0 NA 0.877526276031564 240 0.419946675900311 4 NA NA -5.76449558995269 LTS-039 chrX 13778434 15849048 2070615 * c(PIR-FIGF, CA5B, ASB11, ASB9, MOSPD2, FANCB, VEGFD, GLRA2, GPM6B, CA5BP1, PIGA, GEMIN8, TMEM27, ACE2, BMX, ZRSR2, OFD1, PIR, INE2, AP1S2) 0.122645426120459 20 0.0854664446311811 0.589517393183763 1382 0.343054477937907 2 2 0 -6.95996360331614 LTS-039 chrX 15849049 16672758 823710 * c(GRPR, CTPS2, MAGEB17, S100G, AP1S2) 0.142195701834541 6 0.0390149543978545 0.41791199800256 205 0.23711262369927 2 2 0 -7.32090621420631 LTS-039 chrX 16672759 16685603 12845 * c(CTPS2, S100G) NA 0 NA 0.691 1 NA NA NA NA NA LTS-039 chrX 16685604 20285062 3599459 * c(PHKA2-AS1, SCARNA9L, MIR23C, MIR4768, ADGRG2, SCML2, RAI2, BEND2, EIF1AX, CXorf23, MAP7D2, SH3KBP1, MAP3K15, NHS, PDHA1, PHKA2, PPEF1, TXLNG, CTPS2, RBBP7, RPS6KA3, RS1, SCML1, CDKL5, LOC729609, REPS2, SYAP1) 0.103561833457418 24 0.0568567357997019 0.623200609050616 2911 0.303868248359159 3 3 0 -7.16262108253051 LTS-039 chrX 21392570 22269448 876879 * c(PHEX-AS1, CNKSR2, SMPX, KLHL34, YY2, MBTPS2, PHEX, SMS) NA 0 NA 0.51150240734651 775 0.251717174226585 2 NA NA -5.77575979349405 LTS-039 chrX 22269449 22290986 21538 * PTCHD1-AS NA 0 NA 0.325 1 NA NA NA NA NA LTS-039 chrX 22290987 23412362 1121376 * c(PTCHD1-AS, PTCHD1, ZNF645, DDX53) 0.278615385535772 3 0.105509873155707 0.336934404259865 197 0.177375064477492 1 1 0 -6.83487622130902 LTS-039 chrX 23412363 23754158 341796 * c(PRDX4, PTCHD1, ACOT9) 0.135068203989146 6 0.0946572765295939 0.542972063475922 363 0.212586152663236 2 2 0 -6.77691841347431 LTS-039 chrX 23754159 23761114 6956 * ACOT9 NA 0 NA 1.056 1 NA NA NA NA NA LTS-039 chrX 23761115 23858578 97464 * c(ACOT9, SAT1, APOO) NA 0 NA 1.60263098759751 57 0.488468008151474 8 NA NA -5.76442151310155 LTS-039 chrX 23858579 23874298 15720 * APOO NA 0 NA 0.804 1 NA NA NA NA NA LTS-039 chrX 23874299 24329918 455620 * c(ZFX-AS1, SUPT20HL2, EIF2S3, CXorf58, ZFX, APOO, KLHL15) 0.086 1 NA 0.666474394312947 480 0.336859561274827 3 3 0 -5.77457948140932 LTS-039 chrX 24329919 24329956 38 * SUPT20HL2 NA 0 NA 0.334 1 NA NA NA NA NA LTS-039 chrX 24329957 24382778 52822 * c(SUPT20HL1, SUPT20HL2) 0.202 1 NA 0.279012242809174 84 0.137551346486512 1 1 0 -5.84993994430417 LTS-039 chrX 24382779 24382862 84 * SUPT20HL1 NA 0 NA 0.805 1 NA NA NA NA NA LTS-039 chrX 24382863 24537116 154254 * c(SUPT20HL1, PDK3) NA 0 NA 0.867482954709106 50 0.213211977494086 4 NA NA -5.76595568515742 LTS-039 chrX 24537117 24690879 153763 * c(PDK3, PCYT1B) 0.273 1 NA 0.415543682773221 178 0.144503440562543 1 1 0 -5.89052885297865 LTS-039 chrX 24690880 24711996 21117 * PCYT1B NA 0 NA 0.743 1 NA NA NA NA NA LTS-039 chrX 24711997 25034152 322156 * c(ARX, POLA1, SCARNA23) 0 1 NA 0.619873845459308 280 0.421023269117944 3 3 0 -5.78495934785002 LTS-039 chrX 26156999 27840043 1683045 * c(PPP4R3CP, MAGEB10, VENTXP1, MAGEB6, MAGEB18, DCAF8L2, MAGEB5) NA 0 NA 0.316197932610621 218 0.134501468678727 1 NA NA -6.29982621699911 LTS-039 chrX 27840044 30864182 3024139 * c(IL1RAPL1, MAGEB10, DCAF8L1, NR0B1, TAB3, GK, MAGEB1, MAGEB2, MAGEB3, MAGEB4, CXorf21) 0.241590960864422 8 0.0571962473794017 0.425042085192685 639 0.213132562102118 1 1 0 -7.94504088371401 LTS-039 chrX 30864183 30864544 362 * TAB3 NA 0 NA 0.53 1 NA NA NA NA NA LTS-039 chrX 30864545 31366723 502179 * c(DMD, TAB3, FTHL17) 0 1 NA 0.654255991622253 235 0.273160288656279 3 3 0 -5.79245266415278 LTS-039 chrX 31366724 37314985 5948262 * c(MAGEB16, FAM47A, FAM47B, NA, DMD, CFAP47, FTH1P18, FAM47C, PRRG1, NA, TMEM47) 0.211294720326961 5 0.0689833313199645 0.408194434666526 1003 0.179071188787552 1 1 0 -8.72674305642233 LTS-039 chrX 37314986 38547012 1232027 * c(CYBB, HYPM, LANCL3, OTC, PRRG1, RPGR, DYNLT3, TSPAN7, XK, SRPX, SYTL5) 0.184418422136695 5 0.0798078943463615 0.520219217031204 906 0.242145138392808 2 2 0 -6.79348107055731 LTS-039 chrX 38547013 38663882 116870 * c(MID1IP1, TSPAN7) NA 0 NA 1.946 1 NA NA NA NA NA LTS-039 chrX 38663883 38665820 1938 * MID1IP1 NA 0 NA 1.48398936119611 39 0.512634546375536 7 NA NA -5.76441551489862 LTS-039 chrX 39520401 41092061 1571661 * c(LOC100132831, ATP6AP2, CXorf38, MPC1L, BCOR, USP9X, MED14) 0.123197042316858 4 0.0294222138301432 0.652363672091316 854 0.302157447379843 3 3 0 -6.81882662878981 LTS-039 chrX 41092062 41208053 115992 * c(DDX3X, USP9X) 0.13 1 NA 1.14914405148325 130 0.523789388774235 5 5 0 -5.76562871395749 LTS-039 chrX 41208054 41208136 83 * DDX3X NA 0 NA 0.685 1 NA NA NA NA NA LTS-039 chrX 41208137 45007889 3799753 * c(FUNDC1, DDX3X, GPR82, GPR34, MAOA, MAOB, NDP, NYX, DUSP21, KDM6A, CXorf36, EFHC2, PPP1R2P9, CASK) 0.208519086090563 8 0.0861235615679174 0.578755500371805 1085 0.290180849040848 2 2 0 -7.11331456807793 LTS-039 chrX 45007890 45008008 119 * CXorf36 NA 0 NA 0.352 1 NA NA NA NA NA LTS-039 chrX 45008009 46433547 1425539 * c(LOC392452, ZNF674-AS1, MIR221, MIR222, KRBOX4, CHST7, ZNF674, CXorf36) 0.163275015402513 4 0.0312729915422238 0.411165739046555 299 0.280217130231931 2 2 0 -7.37686157841188 LTS-039 chrX 46433548 47765261 1331714 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, ZNF81, ARAF, CXXC1P1, CDK16, CFP, NDUFB11, CHST7, RP2, SYN1, TIMP1, LINC01545, UBA1, ZNF41, ZNF157, USP11, RBM10, UXT, SLC9A7, INE1, RGN, JADE3) 0.11018238959293 15 0.0725286150426161 0.633156762341963 1675 0.326352107642878 3 3 0 -6.84265824705074 LTS-039 chrX 47765262 48373017 607756 * c(SSX3, FTSJ1, SSX6, SSX9, ZNF81, SPACA5, ZNF630, PORCN, SSX1, SSX5, ZNF182, SLC38A5) 0.145 1 NA 0.465435750854165 559 0.22030223256305 2 2 0 -5.89138107163308 LTS-039 chrX 48373018 48664777 291760 * c(HDAC6, EBP, GATA1, GLOD5, TBC1D25, RBM3, WDR13, PORCN, SUV39H1, WAS) 0.116828838055303 5 0.0280089271483218 0.702797787104381 551 0.336622335169883 3 3 0 -6.73857223606019 LTS-039 chrX 48664778 48664876 99 * HDAC6 NA 0 NA 0.555 1 NA NA NA NA NA LTS-039 chrX 48664877 48690530 25654 * c(HDAC6, PCSK1N, ERAS) 0.118 1 NA 0.39870226689183 167 0.126825938308394 1 1 0 -5.780383594887 LTS-039 chrX 48690531 48978890 288360 * c(PQBP1, TIMM17B, PIM2, WDR45, PRAF2, GPKOW, PCSK1N, KCND1, OTUD5, GRIPAP1, TFE3, SLC35A2, CCDC120) 0.155247409372356 5 0.0577035527502423 0.712889759281388 923 0.326766788528977 2 2 0 -6.87497694929553 LTS-039 chrX 48978891 49034460 55570 * c(GPKOW, PRICKLE3, PLP2, MAGIX) NA 0 NA 1.15248133252357 156 0.475382141175795 5 NA NA -5.76517947916619 LTS-039 chrX 49034461 49093685 59225 * c(CCDC22, PRICKLE3, SYP, CACNA1F) NA 0 NA 0.756638357607714 333 0.336483181400052 3 NA NA -5.76561080219139 LTS-039 chrX 49093686 49098446 4761 * CCDC22 NA 0 NA 0.445 1 NA NA NA NA NA LTS-039 chrX 49098447 53107068 4008622 * c(GAGE12F, GAGE8, GAGE12D, MIR500B, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, GSPT2, GAGE1, GAGE2C, GAGE4, GAGE2E, SSX7, SSX8, CCDC22, USP27X, MIR188, SPANXN5, FOXP3, GPR173, NUDT11, MIR362, MIR500A, MIR501, MIR502, SHROOM4, NA, GAGE2B, GAGE13, XAGE1B, MIR532, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, MAGED4B, CCNB3, PAGE1, AKAP4, PPP1R3F, BMP15, MAGED1, PAGE4) 0.290078163224735 13 0.152311295606172 0.474537299753473 1507 0.228336851239081 2 2 0 -7.67044174761794 LTS-039 chrX 53107069 54159336 1052268 * c(HUWE1, RIBC1, IQSEC2, PHF8, HSD17B10, MIRLET7F2, MIR98, GPR173, FAM120C, TSPYL2, KDM5C, SMC1A) 0.104207082817573 11 0.0964448971268993 0.575551098809625 1736 0.275254310630595 2 2 0 -6.98196697115018 LTS-039 chrX 54159337 54160222 886 * FAM120C NA 0 NA 0.944 1 NA NA NA NA NA LTS-039 chrX 54160223 54224623 64401 * c(FAM120C, WNK3) 0.0293318600579682 2 0.0339411254969543 0.863600467577271 179 0.478339772987721 12 12 0 -6.92181560515162 LTS-039 chrX 54224624 54224698 75 * WNK3 NA 0 NA 0.44 1 NA NA NA NA NA LTS-039 chrX 54224699 55744285 1519587 * c(MTRNR2L10, MIR4536-1, RRAGB, MAGED2, FOXR2, PAGE3, USP51, PAGE2, ALAS2, FGD1, APEX2, MAGEH1, ITIH6, PAGE2B, PFKFB1, GNL3L, WNK3, SNORA11, TRO, TSR2, FAM104B, PAGE5) 0.109871577077353 10 0.068080344691646 0.532222828794322 1300 0.274161533313247 2 2 0 -7.04271187303515 LTS-039 chrX 55744286 56311132 566847 * c(RRAGB, KLF8) NA 0 NA 0.479416062732708 127 0.258267350330949 2 NA NA -5.81678044710938 LTS-039 chrX 56311133 56590030 278898 * c(KLF8, UBQLN2) NA 0 NA 1.36 1 NA NA NA NA NA LTS-039 chrX 56590031 56593503 3473 * UBQLN2 NA 0 NA 0.975841572326821 73 0.580442960213045 4 NA NA -5.76446038323591 LTS-039 chrX 56593504 56761036 167533 * LINC01420 NA 0 NA 0.59 1 NA NA NA NA NA LTS-039 chrX 56761037 57621053 860017 * c(FAAH2, ZXDB, SPIN3, UQCRBP1, SPIN2B, SPIN2A, LINC01420) NA 0 NA 0.461325430973174 225 0.261859872408465 2 NA NA -5.90890483526157 LTS-039 chrX 57621054 57621123 70 * ZXDB NA 0 NA 0.571 1 NA NA NA NA NA LTS-039 chrX 57621124 57937169 316046 * c(ZXDB, ZXDA) NA 0 NA 0.696725176557001 161 0.322060667821707 3 NA NA -5.76518861570043 LTS-039 chrX 61999880 62974993 975114 * c(SPIN4, ARHGEF9, LINC01278) NA 0 NA 0.553821742258088 229 0.344803740350267 2 NA NA -5.77327937883216 LTS-039 chrX 62974994 63004907 29914 * ARHGEF9 NA 0 NA 0.228 1 NA NA NA NA NA LTS-039 chrX 63004908 65427040 2422133 * c(MIR1468, VSIG4, AMER1, ASB12, ARHGEF9, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, LAS1L, FRMD8P1, HEPH) 0.24 1 NA 0.421503836732362 919 0.177459052442889 1 1 0 -7.03313278167885 LTS-039 chrX 65427041 67284066 1857026 * c(AR, OPHN1, EDA2R, HEPH) 0.254462923249907 2 0.0268700576850888 0.400287999407883 412 0.178007486829751 1 1 0 -7.41796991067358 LTS-039 chrX 67284067 67292960 8894 * OPHN1 NA 0 NA 0.616 1 NA NA NA NA NA LTS-039 chrX 67292961 68066156 773196 * c(EFNB1, YIPF6, OPHN1, STARD8) 0.121322884239117 2 0.0205060966544099 0.585479744511237 479 0.260246662340199 3 3 0 -6.98671115521712 LTS-039 chrX 68066157 68380665 314509 * PJA1 NA 0 NA 2.115 1 NA NA NA NA NA LTS-039 chrX 68380666 68424847 44182 * PJA1 0.0390925455909738 2 0.00494974746830583 1.12012226902789 69 0.542649992229334 11 11 0 -6.7749329422559 LTS-039 chrX 68424848 68428365 3518 * character(0) NA 0 NA 0.6 1 NA NA NA NA NA LTS-039 chrX 68428366 69502766 1074401 * c(MIR676, OTUD6A, AWAT1, AWAT2, EDA, FAM155B, DGAT2L6, RAB41, IGBP1, ARR3, P2RY4) 0.12744374767412 7 0.105040808396411 0.412586743386785 598 0.233418332477107 2 2 0 -7.46044239722349 LTS-039 chrX 69502767 69503053 287 * RAB41 NA 0 NA 0.49 1 NA NA NA NA NA LTS-039 chrX 69503054 71934101 2431048 * c(CXorf65, DLG3, KIF4A, ITGB1BP2, GJB1, INGX, CXCR3, SNX12, RGAG4, NHSL2, RAB41, IL2RG, FLJ44635, FOXO4, LINC00891, RPS26P11, CITED1, NONO, PDZD11, PHKA1, PIN4, NLGN3, ERCC6L, GDPD2, HDAC8, TEX11, BCYRN1, RPS4X, TAF1, OGT, SLC7A3, ZMYM3, ACRC, MED12) 0.0874785444857008 18 0.0831581098981336 0.586517983729565 2991 0.320325206268663 2 2 0 -7.29698653260223 LTS-039 chrX 71934102 72066650 132549 * character(0) NA 0 NA 0.118 1 NA NA NA NA NA LTS-039 chrX 72066651 72225053 158403 * c(PABPC1L2B, FAM226B) NA 0 NA 0.118708276714721 43 0.0977787408926022 0 NA NA -6.82753732162396 LTS-039 chrX 72225054 72225111 58 * PABPC1L2B NA 0 NA 0.417 1 NA NA NA NA NA LTS-039 chrX 72225112 72667293 442182 * c(CDX4, PABPC1L2A, NAP1L2, PABPC1L2B, NAP1L6) NA 0 NA 0.311253479140837 158 0.170709467118823 1 NA NA -5.88905520902749 LTS-039 chrX 72667294 75651576 2984283 * c(MIR374B, FTX, MIR374C, CDX4, MAP2K4P1, UPRT, MAGEE2, ZDHHC15, ABCB7, TTC3P1, KIAA2022, ZCCHC13, MIR374A, RLIM, PBDC1, CHIC1, JPX, MAGEE1, SLC16A2, MIR545, MIR421, XIST, TSIX) 0.109365546468349 6 0.0831745153277132 0.489790694934243 1534 0.236747196928221 2 2 0 -7.14767878856588 LTS-039 chrX 75651577 77528088 1876512 * c(COX7B, PGAM4, MIR384, TAF9B, PGK1, ATP7A, ATRX, MAGEE1, MAGT1, FGF16) 0 1 NA 0.698940316565043 950 0.376038806233435 3 3 0 -5.7668371210187 LTS-039 chrX 77528089 77528173 85 * CYSLTR1 NA 0 NA 0.455 1 NA NA NA NA NA LTS-039 chrX 77528174 79699634 2171461 * c(MIR4328, CYSLTR1, FAM46D, ZCCHC5, P2RY10, LPAR4, TBX22, GPR174, ITM2A) 0.300199820387369 3 0.101795546726433 0.34654646868055 341 0.167211052992571 1 1 0 -6.92545166762427 LTS-039 chrX 79699635 88009525 8309891 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, CYLC1, FAM46D, BRWD3, RPS6KA6, SATL1, CPXCR1, POU3F4, KLHL4, SH3BGRL, ZNF711, HMGN5, POF1B) 0.141276938880019 18 0.0911760668344423 0.484842808449844 1702 0.30117161631755 2 2 0 -7.17815582669644 LTS-039 chrX 88009526 90691437 2681912 * c(PABPC5, CPXCR1, TGIF2LX) NA 0 NA 0.256718893556124 62 0.0874311408435922 1 NA NA -11.9193486845675 LTS-039 chrX 90691438 90693597 2160 * PABPC5 NA 0 NA 0.541360730082426 45 0.178087689783784 2 NA NA -5.76442603071214 LTS-039 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.179 1 NA NA NA NA NA LTS-039 chrX 91066177 91878177 812001 * PCDH11X 0.241876973780045 7 0.0642065120566146 0.237500826197959 311 0.211076661911282 1 1 0 -8.04909386868393 LTS-039 chrX 91878178 100630377 8752200 * c(CSTF2, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, SRPX2, PCDH11X, FAM133A, RPA4, ARL13A, XKRX, XRCC6P5, NAP1L3, TAF7L, PCDH19, TMEM35A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, SYTL4) 0.166054232796017 13 0.0892946002904187 0.569911920102466 1912 1.31102005966711 2 2 0 -6.75114383629858 LTS-039 chrX 100630378 100645439 15062 * BTK NA 0 NA 0.939 1 NA NA NA NA NA LTS-039 chrX 100645440 100743760 98321 * c(ARMCX4, RPL36A-HNRNPH2, GLA, HNRNPH2, RPL36A, BTK) 0.068 1 NA 0.908286607759491 153 0.384196868587095 4 4 0 -5.76454555772184 LTS-039 chrX 100743761 100750786 7026 * ARMCX4 0 1 NA 0.320348487696986 144 0.183130359005998 1 1 0 -5.76541521777469 LTS-039 chrX 100750787 100753069 2283 * ARMCX4 NA 0 NA 0.492 1 NA NA NA NA NA LTS-039 chrX 100753070 100912745 159676 * c(ARMCX4, ARMCX1, ARMCX3, ARMCX6, ARMCX2) NA 0 NA 0.645708006583408 183 0.198761096138397 3 NA NA -5.78699231988364 LTS-039 chrX 100912746 101032380 119635 * ARMCX2 NA 0 NA 0.332 1 NA NA NA NA NA LTS-039 chrX 101032381 101439808 407428 * c(TCEAL2, TCEAL6, BEX5, NXF5, ZMAT1) 0.170228932720209 4 0.0303795435559303 0.351844226268347 211 0.172434773122244 2 2 0 -7.94155882733541 LTS-039 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.117 1 NA NA NA NA NA LTS-039 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.174610888557323 49 0.510950734475668 0 NA NA -5.76467722027618 LTS-039 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.554 1 NA NA NA NA NA LTS-039 chrX 101768565 102339468 570904 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, GPRASP2, RAB40AL, BEX1, NXF4, NXF3, ARMCX5, BHLHB9, GPRASP1) 0.239 1 NA 0.437383810174875 484 0.183292120628117 2 2 0 -6.12392473680767 LTS-039 chrX 102339469 102339566 98 * NXF3 NA 0 NA 0.546 1 NA NA NA NA NA LTS-039 chrX 102339567 102831403 491837 * c(RAB40A, BEX3, TCEAL5, TCEAL9, NXF3, BEX4, TCEAL7, BEX2, TCEAL8) NA 0 NA 0.595758609154597 255 0.232347670036734 2 NA NA -5.83643224335026 LTS-039 chrX 102831404 102831930 527 * character(0) NA 0 NA 0.858 1 NA NA NA NA NA LTS-039 chrX 102831931 102931938 100008 * c(TCEAL4, TCEAL3, TCEAL1, MORF4L2) 0.0827808674517371 2 0.0388908729652601 0.915223106720942 118 0.660717599869085 5 5 0 -6.74134612448469 LTS-039 chrX 102931939 106093533 3161595 * c(MUM1L1, FAM199X, H2BFWT, NRK, TMEM31, IL1RAPL2, H2BFM, LOC286437, TMSB15B, MORF4L2-AS1, SLC25A53, GLRA4, RAB9B, PLP1, TBC1D8B, CXorf57, TEX13A, ZCCHC18, SERPINA7, RNF128, MORC4, ESX1, MORF4L2) 0.111806630944493 4 0.139069227365366 0.476747534353295 1440 0.238099559588086 2 2 0 -7.16731770571415 LTS-039 chrX 106093534 106096730 3197 * c(TBC1D8B, MORC4) NA 0 NA 0.686 1 NA NA NA NA NA LTS-039 chrX 106096731 106361955 265225 * c(TBC1D8B, RBM41, MORC4, CLDN2, RIPPLY1) 0.112 1 NA 0.672838880706338 379 0.281194319687413 3 3 0 -5.77060782247806 LTS-039 chrX 106361956 106893478 531523 * c(PIH1D3, NUP62CL, RBM41, PRPS1) NA 0 NA 0.441255648998086 333 0.186540682014751 2 NA NA -6.06192247375607 LTS-039 chrX 106893479 106893516 38 * PRPS1 NA 0 NA 0.778 1 NA NA NA NA NA LTS-039 chrX 106893517 107018842 125326 * c(TSC22D3, PRPS1) NA 0 NA 1.02819063509087 92 0.276249963841979 5 NA NA -5.76613948121897 LTS-039 chrX 107018843 109590268 2571426 * c(MIR3978, MID2, ATG4A, COL4A5, COL4A6, TSC22D3, ACSL4, KCNE5, GUCY2F, VSIG1, NXT2, TEX13B, PSMD10, SNORD96B, TMEM164, IRS4, AMMECR1) 0.109660422779845 18 0.064350145116158 0.56912350497294 1701 0.279109338111958 2 2 0 -7.17506270007515 LTS-039 chrX 109590269 109693753 103485 * c(RGAG1, AMMECR1) NA 0 NA 0.364 1 NA NA NA NA NA LTS-039 chrX 109693754 109765816 72063 * c(RGAG1, TDGF1P3) NA 0 NA 0.304456446023 133 0.115132001965177 1 NA NA -5.82795256224774 LTS-039 chrX 109765817 109917067 151251 * TDGF1P3 NA 0 NA 0.612 1 NA NA NA NA NA LTS-039 chrX 109917068 114953716 5036649 * c(MIR1912, MIR1298, MIR1911, MIR1264, MIR764, TRPC5OS, MIR4329, RBMXL3, AMOT, DCX, HTR2C, ZCCHC16, LHFPL1, IL13RA2, LINC00890, PAK3, LUZP4, PLS3, MIR448, LRCH2, SNORA35, TRPC5, ALG13, CAPN6, CHRDL1) 0.297782089261109 3 0.110530538766442 0.476790364361694 1661 0.195837301904678 2 1 1 -8.2874735396481 LTS-039 chrX 114953717 115235688 281972 * character(0) NA 0 NA 0.261 1 NA NA NA NA NA LTS-039 chrX 115235689 115304442 68754 * AGTR2 0.25 1 NA 0.220743118122032 47 0.0714043806003362 0 0 0 -6.27423643898558 LTS-039 chrX 115304443 117080872 1776430 * c(SLC6A14, AGTR2, CT83, KLHL13) 0.182243651857875 7 0.0675520962982328 0.465776663848612 277 0.195838191668436 2 2 0 -7.23744090911124 LTS-039 chrX 117080873 119394257 2313385 * c(ZBTB33, MIR1277, SLC25A5-AS1, PGRMC1, DOCK11, AKAP14, RHOXF1, NKAPP1, ZCCHC12, SLC25A43, SEPT6, SNORA69, SLC25A5, SOWAHD, IL13RA1, NDUFA1, WDR44, TMEM255A, NKRF, KIAA1210, RPL39, CXorf56, UPF3B, UBE2A, MIR766, RNF113A, NKAP, LONRF3, KLHL13) 0.117005661344365 24 0.0803635647307403 0.6345213552756 1945 0.314997879150927 3 3 0 -6.91056878570634 LTS-039 chrX 119394258 119671960 277703 * c(ATP1B4, LAMP2, TMEM255A, CUL4B) 0.100194081782848 4 0.137863156789622 0.486302184434027 363 0.217017466287019 2 2 0 -6.87108682114391 LTS-039 chrX 119671961 119671989 29 * CUL4B NA 0 NA 1.145 1 NA NA NA NA NA LTS-039 chrX 119671990 120008830 336841 * c(MCTS1, C1GALT1C1, CT47B1, CUL4B) NA 0 NA 0.774445979191823 183 0.441901390796787 3 NA NA -5.77189953663019 LTS-039 chrX 120008831 120008895 65 * CT47B1 NA 0 NA 0.306 1 NA NA NA NA NA LTS-039 chrX 120008896 122318711 2309816 * c(CT47A11, GLUD2, GRIA3, CT47B1, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1) 0.152155086983695 4 0.00812403840463597 0.355594431038744 104 0.29658273973478 2 2 0 -9.08749147819679 LTS-039 chrX 122318712 123514210 1195499 * c(TENM1, STAG2, GRIA3, XIAP, SH2D1A, THOC2) 0.161216041912704 9 0.0987648722977962 0.589701869134833 807 0.281077231780986 2 2 0 -6.83205445045811 LTS-039 chrX 123514211 123514309 99 * TENM1 NA 0 NA 0.344 1 NA NA NA NA NA LTS-039 chrX 123514310 127186474 3672165 * c(TEX13C, PRR32, TENM1, DCAF12L1, ACTRT1, DCAF12L2) 0.163614997257661 7 0.12971433815816 0.397080034975116 414 0.229572183324905 1 1 0 -7.54051739961362 LTS-039 chrX 128581079 129063362 482284 * c(UTP14A, OCRL, ZDHHC9, SASH3, SMARCA1, XPNPEP2, APLN) 0.140561522062776 5 0.0499769947075652 0.607144373334003 770 0.258233719352873 2 2 0 -6.90042513849698 LTS-039 chrX 129063363 129063447 85 * UTP14A NA 0 NA 0.371 1 NA NA NA NA NA LTS-039 chrX 129063448 132351271 3287824 * c(HS6ST2-AS1, ENOX2, UTP14A, GPR119, ARHGAP36, ELF4, FIRRE, OR13H1, IGSF1, TFDP3, RBMX2, STK26, ZNF280C, MBNL3, RAP2C, BCORL1, USP26, SLC25A14, HS6ST2, FRMD7, AIFM1, RAB33A) 0.177554511381692 19 0.0439493328692157 0.507608751672783 1806 0.270996041819223 2 2 0 -6.87965094785524 LTS-039 chrX 132351272 132351359 88 * TFDP3 NA 0 NA 0.738 1 NA NA NA NA NA LTS-039 chrX 132351360 134125195 1773836 * c(MIR450B, LINC00629, PLAC1, FAM122B, FAM122C, GPC4, GPC3, HPRT1, CCDC160, MIR106A, MIR19B2, MIR92A2, MIR424, TFDP3, MIR450A1, MOSPD1, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, SMIM10, MIR542, PHF6, MIR503HG) 0.0988578217300651 4 0.0492705118030383 0.603838144941151 801 0.303465349019547 3 3 0 -7.13103191378447 LTS-039 chrX 134125196 134125281 86 * SMIM10 NA 0 NA 1.178 1 NA NA NA NA NA LTS-039 chrX 134125282 134186222 60941 * c(FAM127B, FAM127C, SMIM10, FAM127A) 0.113 1 NA 1.11149739875869 92 0.336135058202922 5 5 0 -5.76482968914356 LTS-039 chrX 134186223 134257229 71007 * c(LINC00633, SMIM10L2B) NA 0 NA 0.38 1 NA NA NA NA NA LTS-039 chrX 134257230 135390818 1133589 * c(SLC9A6, ADGRG4, INTS6L, ZNF449, FHL1, SMIM10L2A, CT45A3, CT45A5, CT45A6, CT45A1, CT55, SAGE1, CT45A2, ZNF75D, MAP7D3, MMGT1) 0.162206832845061 5 0.05058359417835 0.572049505348545 839 0.226822677988825 2 2 0 -6.8073055759582 LTS-039 chrX 135390819 135390911 93 * ADGRG4 NA 0 NA 0.37 1 NA NA NA NA NA LTS-039 chrX 135390912 135432122 41211 * ADGRG4 0.153595412886002 2 0.0643467170879758 0.351743995188847 136 0.206047924708521 2 2 0 -6.83609886458517 LTS-039 chrX 135432123 139037913 3605791 * c(MIR934, LINC00892, FGF13-AS1, ADGRG4, LINC00889, F9, FGF13, SNORD61, RBMX, HTATSF1, ATP11C, CXorf66, MCF2, VGLL1, MIR504, MIR505, SRD5A1P1, BRS3, ZIC3, GPR101, ARHGEF6, CD40LG) 0.198837526367805 5 0.039853481654681 0.535402388512433 1234 0.281341279609179 2 2 0 -7.25517945255339 LTS-039 chrX 139037914 146558174 7520261 * c(MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CXorf51B, MIR320D2, MIR514B, CDR1, SLITRK4, SPANXN3, MAGEC3, NA, NA, LDOC1, LINC00632, CXorf66, LOC389895, UBE2NL, SPANXN4, SPANXN1, SPANXN2, MAGEC2, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SPANXC, SOX3, SLITRK2, TMEM257, MAGEC1) 0.281436609391744 26 0.118620843933032 0.391184837891549 1016 0.208234575007933 1 1 0 -7.85384932106362 LTS-039 chrX 146558175 146993629 435455 * c(FMR1-AS1, FMR1) NA 0 NA 1.149 1 NA NA NA NA NA LTS-039 chrX 146993630 148627372 1633743 * c(FMR1-AS1, LINC00893, FMR1NB, FMR1, AFF2, IDS, CXorf40A) 0.0862824883404446 9 0.0859854638877991 0.636614398770824 775 0.386971100624038 3 3 0 -6.90049021767131 LTS-039 chrX 148627373 148664843 37471 * CXorf40A NA 0 NA 0.264687677036407 56 0.162827707524433 1 NA NA -5.83030051635217 LTS-039 chrX 148664844 148770645 105802 * c(MAGEA11, TMEM185A) NA 0 NA 0.592774212307628 40 0.169511054022732 2 NA NA -5.79124353473605 LTS-039 chrX 148770646 149100892 330247 * c(MAGEA8-AS1, MAGEA8, MAGEA11, CXorf40B) 0 1 NA 0.306012418137443 145 0.25097344637519 1 1 0 -5.82138264671179 LTS-039 chrX 149100893 151825944 2725052 * c(LINC00894, MIR2114, MIR4330, MAMLD1, MAGEA10-MAGEA5, CNGA2, PASD1, VMA21, GABRA3, GABRE, HMGB3, MIR105-1, MIR105-2, MAGEA4, MAGEA5, MAGEA10, MTM1, CXorf40B, GABRQ, MIR452, MIR767, PRRG3, CD99L2, MTMR1, FATE1, GPR50) 0.0860363542137629 20 0.0597143198906259 0.572460006721862 1514 0.373524464516554 3 3 0 -7.42235262860992 LTS-039 chrX 151825945 151869399 43455 * MAGEA6 NA 0 NA 0.108 1 NA NA NA NA NA LTS-039 chrX 151869400 151936079 66680 * c(CSAG4, CSAG1, MAGEA3, MAGEA6, MAGEA12) 0.190071747183961 7 0.0575454271899704 0.33482384031759 118 0.247750878998095 2 2 0 -7.02717105677019 LTS-039 chrX 151936080 151995516 59437 * MAGEA3 NA 0 NA 0.641 1 NA NA NA NA NA LTS-039 chrX 151995517 153074107 1078591 * c(NA, NA, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, DUSP9, ABCD1, SRPK3, PNMA3, IDH3G, MAGEA1, ATP2B3, NSDHL, PLXNB3, HAUS7, PDZD4, BGN, SLC6A8, SSR4, ZNF185, FAM58A) 0.128374680173553 29 0.0761722186663335 0.603345986088913 1822 0.289229527111263 3 3 0 -6.94366997360229 LTS-039 chrX 153074108 153095641 21534 * PDZD4 NA 0 NA 0.255 1 NA NA NA NA NA LTS-039 chrX 153095642 153149395 53754 * c(L1CAM, PDZD4) NA 0 NA 0.410395061820152 176 0.127770394209158 1 NA NA -5.81349803635628 LTS-039 chrX 153149396 154051688 902293 * c(SMIM9, MIR718, MIR3202-2, MIR3202-1, GAB3, TEX28, DKC1, DNASE1L1, EMD, FLNA, G6PD, OPN1MW, GDI1, SNORA70, HCFC1, CTAG2, IRAK1, L1CAM, ARHGAP4, MECP2, MPP1, ATP6AP1, AVPR2, PLXNA3, OPN1LW, RENBP, FAM3A, RPL10, SNORA36A, SNORA56, TAZ, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, IKBKG, FAM50A) 0.118171827669947 33 0.0477437724004954 0.754733127190805 2607 0.608477167885039 3 3 0 -6.73861555107249 LTS-039 chrX 154051689 154213093 161405 * c(SMIM9, F8) 0.128 1 NA 0.4896881467863 220 0.142545556866857 2 2 0 -5.7952052999034 LTS-039 chrX 154213094 154215462 2369 * F8 NA 0 NA 0.924 1 NA NA NA NA NA LTS-039 chrX 154215463 154489291 273829 * c(CMC4, RAB39B, F8, MTCP1, FUNDC2, VBP1, BRCC3) 0.0995029761790346 5 0.0599608205414169 0.763862867534248 383 0.316317378233267 4 4 0 -6.77504536894035 LTS-039 chrX 154489292 154564019 74728 * c(RAB39B, CLIC2) 0.144545272366017 2 0.00494974746830582 0.521238763265358 113 0.264096304875801 9 8 1 -7.86054055750562 LTS-039 chrX 154564020 154577837 13818 * character(0) NA 0 NA 0.513 1 NA NA NA NA NA LTS-039 chrX 154577838 154579156 1319 * character(0) 0.162797457794467 2 0.316076731190387 0.330109412357172 18 1.29079877104073 2 2 0 -6.73318163426747 LTS-039 chrX 154579157 154580260 1104 * character(0) NA 0 NA 0.190878590078018 22 0.0931373328508111 0 NA NA -5.76544921233787 LTS-039 chrX 154580261 154774986 194726 * TMLHE NA 0 NA 0.631726091961155 39 0.450980929663747 3 NA NA -5.77247571476235 LTS-039 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.332136238163906 25 0.229740977334621 1 NA NA -5.78642781380344 LTS-039 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.343 1 NA 0.470643456137287 17 0.845845578487621 2 2 0 -5.85807626031658 LTS-039 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 2.42794357614584 3 0.922028379895832 13 NA NA -5.76441022496856 LTS-039 chr1 14677 1603048 1588372 * c(LOC100130417, LOC100288069, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, WASH7P, SLC35E2B, TNFRSF4, LOC729737, OR4F5, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, NA NA NA NA NA NA NA NA NA LTS-040 PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, CDK11B) 0.395899739354893 72 0.0805014203453659 0.789303485545406 3026 0.23003379318887 2 1 1 -6.81615250447883 LTS-040 NA NA NA NA LTS-040 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.423 1 NA NA NA NA NA LTS-040 chr1 1606859 1636501 29643 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.445605965886496 6 0.0455309418600875 0.602717988647319 73 0.318090786534175 2 1 1 -6.85741679706157 LTS-040 chr1 1636502 1637053 552 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.274 1 NA NA NA NA NA LTS-040 chr1 1637054 1646772 9719 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.327476287843637 45 0.20422970084459 0 NA NA -5.76779889175568 LTS-040 chr1 1646773 1647806 1034 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.755 1 NA NA NA NA NA LTS-040 chr1 1647807 1671167 23361 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.41088117390982 17 0.0841671568613176 0.612720899103021 134 0.193480502384743 2 1 1 -6.77351084683404 LTS-040 chr1 1671168 1682939 11772 * c(NADK, SLC35E2B, SLC35E2) NA 0 NA 0.797 1 NA NA NA NA NA LTS-040 chr1 1682940 4772520 3089581 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, RER1, LOC115110, TPRG1L, FAM213B, ACTRT2, CCDC27, CALML6, DFFB, MEGF6, FAAP20, GABRD, ARHGEF16, GNB1, LOC284661, C1orf174, TMEM52, HES5, SMIM1, LINC00982, WRAP73, PEX10, PANK4, PRKCZ, AJAP1, TP73-AS1, LRRC47, PRDM16, SKI, NADK, MIR551A, TP73, LINC01346, MMEL1, MORN1, CFAP74, TNFRSF14, PLCH2, CEP104) 0.402570391268318 98 0.0721707597071074 0.802663005284387 3009 0.194792834160316 2 1 1 -6.83053560614219 LTS-040 chr1 4772521 6711614 1939094 * c(MIR4252, MIR4689, MIR4417, ACOT7, PHF13, ICMT, CHD5, NPHP4, ZBTB48, GPR153, RNF207, HES3, HES2, DNAJC11, AJAP1, PLEKHG5, RPL22, NOL9, TAS1R1, ESPN, KCNAB2, TNFRSF25, THAP3, KLHL21) 0.360814438166729 29 0.050011131765764 0.939474269539203 2105 0.426449347295679 3 2 1 -6.9668337642605 LTS-040 chr1 6711615 12786645 6075031 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, MASP2, UTS2, PARK7, RBP7, CLCN6, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, ENO1, CLSTN1, KIF1B, CAMTA1, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, TNFRSF9, DRAXIN, CENPS, MIR34A, MTHFR, RERE, NPPA, NPPB, SLC45A1, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, VPS13D, DNAJC11, CTNNBIP1, AGTRAP, DISP3, MIIP, PIK3CD-AS1, NA NA NA NA NA NA NA NA NA LTS-040 NMNAT1, SLC2A5, SRM, SNORA59B, TNFRSF1B, CA6, GPR157, SPSB1, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2) 0.387137941275673 157 0.0823571420123215 0.770902032227633 6908 0.206417629693735 2 1 1 -6.87602880541431 LTS-040 NA NA NA NA LTS-040 chr1 12786646 14507181 1720536 * c(PDPN, LRRC38, AADACL3, HNRNPCL1, PRAMEF9, PRAMEF10, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, PRAMEF11, PRAMEF6, HNRNPCL2, PRAMEF19, PRAMEF20, HNRNPCL3, PRAMEF1, PRAMEF2, PRAMEF22, NA, PRDM2, C1orf158) 0.344710389221066 18 0.122790219107618 0.924570718750018 654 0.295629058295916 3 2 1 -6.86001522169609 LTS-040 chr1 14507182 14925146 417965 * character(0) NA 0 NA 0.583 1 NA NA NA NA NA LTS-040 chr1 14925147 16978916 2053770 * c(MST1P2, CTRC, CROCCP3, FHAD1, CLCNKA, CLCNKB, ARHGEF19, C1orf64, EPHA2, TMEM51-AS1, SPEN, PLEKHM2, KAZN, DNAJC16, SZRD1, HSPB7, SLC25A34, FAM131C, SPATA21, TMEM82, UQCRHL, CELA2B, FBXO42, FBLIM1, TMEM51, NBPF1, NECAP2, RSC1A1, CELA2A, FLJ37453, ZBTB17, EFHD2, RSG1, AGMAT, CASP9, DDI2, CROCCP2) 0.381723008751573 142 0.0845841927653604 0.769439435889388 3033 0.308269354523386 2 1 1 -6.89380004375957 LTS-040 chr1 16978917 17009683 30767 * character(0) NA 0 NA 1.199 1 NA NA NA NA NA LTS-040 chr1 17009684 17012093 2410 * character(0) 0.464557442453102 5 0.0273733446988124 1.57332411030657 58 0.480261532967608 6 3 3 -7.74917235746041 LTS-040 chr1 17012094 17017582 5489 * character(0) NA 0 NA 1.046 1 NA NA NA NA NA LTS-040 chr1 17017583 17248500 230918 * c(MST1L, ESPNP, CROCC) 0.28873963910384 30 0.0905883451436335 1.12197230127471 225 0.331208192749582 5 4 1 -6.78823568720289 LTS-040 chr1 17248501 17248531 31 * CROCC NA 0 NA 1.602 1 NA NA NA NA NA LTS-040 chr1 17248532 17274945 26414 * CROCC 0.429287843761117 3 0.0302654919008431 1.54168830838896 72 0.452280937861346 6 3 3 -6.74151908549849 LTS-040 chr1 17274946 17275407 462 * CROCC NA 0 NA 1.102 1 NA NA NA NA NA LTS-040 chr1 17275408 19236959 1961552 * c(MIR4695, PADI2, IFFO2, KLHDC7A, ATP13A2, PADI4, PADI1, PADI6, MFAP2, PAX7, PADI3, ARHGEF10L, RCC2, SDHB, TAS1R2, ACTL8, IGSF21, ALDH4A1, CROCC) 0.378069531591384 67 0.0662173551838496 0.834793306925758 1834 0.208363061612121 2 1 1 -7.14653569784699 LTS-040 chr1 19236960 25599160 6362201 * c(MIR3115, MIR4253, LOC100506730, LOC100506801, TCEB3-AS1, MINOS1-NBL1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, IFFO2, MYOM3, VWA5B1, UBXN10, ZNF436-AS1, IFNLR1, FAM43B, DDOST, E2F2, ECE1, EPHA8, EPHB2, AKR7A3, KDM1A, EMC1, OTUD3, UBR4, CELA3B, AKR7L, ALPL, FUCA1, TMCO4, GALE, MDS2, CLIC4, SYF2, PLA2G2D, LOC284632, LINC00339, PLA2G2E, HMGCL, HSPG2, HTR1D, HTR6, LINC01141, NA NA NA NA NA NA NA NA NA LTS-040 ID3, PLA2G2C, SH2D5, NCMAP, LDLRAD2, MINOS1, NBL1, HP1BP3, MRTO4, PLA2G2A, PLA2G5, WNT4, RNF186, PQLC2, CAMK2N1, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, KIF17, GRHL3, IL22RA1, RAP1GAP, RHD, RPL11, RPS14P3, PLA2G2F, PINK1, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, MUL1, ZNF436, CAPZB, USP48, NBPF3, AKR7A2, RUNX3, EIF4G3, STPG1, CDA, ZBTB40, CDC42) 0.39661058436019 187 0.0886951791227065 0.780906039142769 8368 0.202404584055755 2 1 1 -6.79685803309873 LTS-040 NA NA NA NA LTS-040 chr1 25599161 25656954 57794 * c(RSRP1, RHD) NA 0 NA 1.52399885695089 73 0.320217195839661 6 NA NA -5.76481283059802 LTS-040 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.773 1 NA NA NA NA NA LTS-040 chr1 25666924 32127953 6461030 * c(MATN1-AS1, MIR1976, MIR3917, MIR4420, PTPRU, WASF2, CNKSR1, CD52, GMEB1, NUDC, RCC1, RAB42, FAM46B, KDF1, COL16A1, LINC01225, PDIK1L, PAQR7, FAM76A, EPB41, EXTL1, EYA3, FABP3, FGR, DNAJC8, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, RNU11, AHDC1, SMPDL3B, SFN, GPR3, LINC01226, HCRTR1, HMGN2, SERINC2, CATSPER4, TRNP1, CD164L2, STMN1, TMEM200B, MATN1, OPRD1, PAFAH2, ZNF593, MECR, YTHDF2, ZCCHC17, NA NA NA NA NA NA NA NA NA LTS-040 GPN2, MED18, TRNAU1AP, AIM1L, PPP1R8, XKR8, TMEM57, PEF1, PIGV, MTFR1L, MAN1C1, SELENON, PTAFR, RHCE, RPA2, RPS6KA1, GPATCH3, TINAGL1, SRSF4, ACTG1P20, LOC646471, CEP85, SLC9A1, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD103C, SNORD99, SNORD103A, SLC30A2, LAPTM5, AUNIP, NKAIN1, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, SESN2, TMEM222, SNHG3, ZDHHC18, NR0B2, TRIM63, SYTL1, SNHG12, FCN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MAP3K6, UBXN11, ATPIF1, SNRNP40, THEMIS2, SDC3, PUM1) 0.395379926208832 126 0.0935102119879521 0.768083588783047 7236 0.225857947929829 2 1 1 -6.81631479513147 LTS-040 NA NA NA NA LTS-040 chr1 32127954 32128024 71 * COL16A1 NA 0 NA 0.983 1 NA NA NA NA NA LTS-040 chr1 32128025 32280566 152542 * c(MIR4254, COL16A1, ADGRB2, SPOCD1) 0.397721266925498 11 0.0268933922266148 0.872547217144709 557 0.216550844708655 3 2 1 -6.78790214442498 LTS-040 chr1 32280567 32280610 44 * SPOCD1 0.424 1 NA 0.532 1 NA NA NA NA NA LTS-040 chr1 32280611 41012917 8732307 * c(FAM229A, MIR4255, MIR3659, MIR3605, TMEM35B, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, CAP1, KHDRBS1, SF3A3, SMIM12, AZIN2, TMEM54, CSMD2, TMCO2, ZNF684, GJB4, HMGB4, RNF19B, A3GALT2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, CSF3R, DCDC2B, ZNF362, MANEAL, PHC2, AGO3, AGO4, TXLNA, AK2, FHL3, NCDN, MACF1, KPNA6, FNDC5, MYCBP, HEYL, AGO1, GJA4, GJB3, GJB5, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, NA NA NA NA NA NA NA NA NA LTS-040 HDAC1, HPCA, LINC01343, MTMR9LP, ZBTB8OS, TFAP2E, ZFP69, BMP8A, INPP5B, LCK, CSMD2-AS1, MTF1, MYCL, NDUFS5, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, BSDC1, TMEM39B, CDCA8, EVA1B, TRIM62, PPT1, MAP7D1, IQCC, TMEM234, PSMB2, KIAA1522, DLGAP3, RBBP4, RLF, CLSPN, OXCT2, RRAGC, SFPQ, KIAA0754, SMAP2, S100PBP, MEAF6, EXO5, MRPS15, MARCKSL1, ZFP69B, ZBTB8A, LOC653160, BMP8B, SNORA55, ZBTB8B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LINC01137, PPIEL, ZSCAN20, DNALI1, CCDC28B, AKIRIN1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, PTP4A2, SYNC, TSSK3, STK40, NT5C1A, FAM167B, MFSD2A, LSM10, C1orf94, YARS, EIF3I, PABPC4, SPOCD1, ZMYM4, ZMYM6, THRAP3) 0.404245425334865 112 0.106991158642528 0.762580156496486 10660 0.200239344553091 2 1 1 -6.83014748228759 LTS-040 NA NA NA NA LTS-040 chr1 41012918 52344414 11331497 * c(LOC100129924, EFCAB14-AS1, NFYC-AS1, KDM4A-AS1, MIR761, SLFNL1-AS1, MKNK1-AS1, MIR5584, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, AKR1A1, TESK2, PPIH, LRRC41, EBNA1BP2, KIF2C, FAF1, MED8, TOE1, ERMAP, OSBPL9, PLK3, CCDC163, DMBX1, ZNF684, KLF17, TMEM125, KNCN, MOB3C, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CYP4A11, CYP4B1, CYP4Z2P, CITED4, DPH2, EDN2, ELAVL4, CYP4Z1, SLC5A9, SLFNL1, EPS15, NA NA NA NA NA NA NA NA NA LTS-040 FAAH, FOXJ3, SCMH1, TTC39A, FOXE3, FOXD2, MAST2, SZT2, MMACHC, CYP4X1, BEST4, SNORD55, RNF11, CYP4A22, C1orf185, RIMKLA, GUCA2A, GUCA2B, C1orf228, TCTEX1D4, IPP, SVBP, TEX38, NSUN4, TRABD2B, SKINT1L, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, MUTYH, NASP, NFYC, NRDC, YBX1, PRDX1, ZNF691, TMEM69, CMPK1, ATP6V0B, LURAP1, SPATA6, RNF220, POMGNT1, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DMRTA2, P3H1, ATPAF1, ELOVL1, ST3GAL3, STIL, SLC2A1, SLC6A9, TAL1, TIE1, CCDC30, RPS15AP10, FAAHP1, UQCRH, UROD, ERI3, C1orf50, TMEM53, HECTD3, BEND5, PPCS, HYI, ZMYND12, RAD54L, FOXD2-AS1, HPDL, AGBL4, PIK3R3, MKNK1, PTCH2, B4GALT2, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, EFCAB14, CDC20) 0.39318130586427 156 0.0835504622088857 0.789326147836237 10462 0.201148112670938 2 1 1 -6.84162570502525 LTS-040 NA NA NA NA LTS-040 chr1 52344415 52380468 36054 * c(NRDC, RAB3B) 0 1 NA 0.822604779455867 135 0.463829173821098 2 2 0 -5.76468170515435 LTS-040 chr1 52380469 53292245 911777 * c(KTI12, CC2D1B, ZCCHC11, GPX7, FAM159A, ORC1, TXNDC12, RAB3B, COA7, ZYG11B, PRPF38A, BTF3L4, ZFYVE9) 0.250661126357669 12 0.217148810866203 0.786428138428949 1316 0.276113137387929 2 2 0 -6.73377575066371 LTS-040 chr1 53292246 53292607 362 * ZYG11B 0.473 1 NA 0.600800642060663 9 0.125204610316252 1 1 0 -5.7644243981744 LTS-040 chr1 53292608 89318780 36026173 * c(LINC01135, ZRANB2-AS1, INSL5, PIGK, GNG12-AS1, MIR1262, MIR3117, MIR3671, LINC01364, LOC100507564, LOC100507634, FPGT-TNNI3K, MROH7-TTC4, MIR4422, MIR4781, MIR4794, MIR4711, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, PATJ, IFI44, IFI44L, DNAJB4, HHLA3, MYSM1, OMA1, LRRC42, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, TCEANC2, PODN, C1orf87, CPT2, CRYZ, SAMD13, C1orf52, UBE2U, CTBS, GLIS1, MGC27382, NA NA NA NA NA NA NA NA NA LTS-040 CTH, IL23R, CYP2J2, DAB1, SLC25A3P1, LEXM, KANK4, GADD45A, DHCR24, DIO1, LINC00466, C1orf168, TMEM61, CDCP2, TCTEX1D1, SLC44A5, AK4, CLCA4, USP33, SLC35D1, ADGRL2, USP24, ITGB3BP, LPAR3, DDAH1, SSBP3, MCOLN2, COL24A1, PCSK9, ST6GALNAC3, NEGR1, PARS2, ZZZ3, ACOT11, SERBP1, AK5, SNORD45B, SNORD45A, FOXD3, ANGPTL3, GNG5, GTF2B, ALG6, FAM151A, LINC01140, ACADM, CYR61, IL12RB2, JAK1, JUN, MROH7, MIGA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LDLRAD1, UOX, LEPR, C1orf141, MIR101-1, MIR186, TACSTD2, MAGOH, MGC34796, LHX8, LINC01555, ZYG11A, MSH4, NFIA, ROR1, TNNI3K, SH3GLB1, MRPL37, HOOK1, PDE4B, HSPB11, PGM1, PIN1P1, YIPF1, L1TD1, ZNHIT6, LEPROT, GIPC2, C1orf123, TTC22, RAVER2, ECHDC2, FGGY, MCOLN3, PRKAA2, LRRC40, DEPDC1, PRKACB, NDC1, PKN2, GNG12, PTGER3, PTGFR, ODF2L, LRRC7, CACHD1, MIER1, DNASE2B, RABGGTB, CYB5RL, RPE65, SCP2, DMRTB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ADGRL4, LOC646626, SLC1A7, SNORD45C, TTC4, HSD52, C8A, C8B, USP1, LRP8, BSND, DLEU2L, ZYG11B, TTLL7, WDR78, WLS, RPF1, ANKRD13C, ST6GALNAC5, TM2D1, SYDE2, SGIP1, EFCAB7, ATG4C, LMO4, DOCK7, PLPP3, FPGT, FUBP1, BCL10, DIRAS3, NEXN, SRSF11, SELENOF, ZRANB2, TMEM59, CLCA3P, CLCA2, HS2ST1, DNAJC6) 0.385048218986273 303 0.111962541566595 0.793438377021328 16863 0.242187948979213 2 1 1 -6.90250190476832 LTS-040 NA NA NA NA LTS-040 chr1 89318781 92445257 3126477 * c(GBP4, GBP5, GBP6, HFM1, LRRC8B, GBP1, GBP2, GBP3, ZNF326, GTF2B, BARHL2, GBP7, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, BRDT, TGFBR3, LOC729930, CDC7, ZNF644, LRRC8C) 0.425892546245138 22 0.0551901867179004 0.731549038232279 1938 0.184580423408949 2 1 1 -6.95935302589244 LTS-040 chr1 92445258 92554336 109079 * c(EPHX4, BTBD8, BRDT) NA 0 NA 0.784037355661362 118 0.285099871819487 2 NA NA -5.76442271030324 LTS-040 chr1 92554337 92852543 298207 * c(GLMN, KIAA1107, BTBD8, C1orf146, RPAP2) 0 1 NA 0.948212179007273 345 0.267603287846636 3 3 0 -5.76714001452264 LTS-040 chr1 92852544 94953309 2100766 * c(MIR760, LOC100129046, CCDC18-AS1, DR1, MTF2, ABCA4, GFI1, SNORA66, GCLM, DNTTIP2, CCDC18, FAM69A, TMED5, FNBP1L, ABCD3, SNORD21, RPL5, EVI5, RPAP2, BCAR3, ARHGAP29) 0.30811738694433 19 0.066429490386292 1.01555741036059 1793 0.256296284618986 4 3 1 -7.20104004755522 LTS-040 chr1 94953310 95712785 759476 * c(TMEM56-RWDD3, CNN3, SLC44A3, TMEM56, ALG14, F3, RWDD3, ABCD3, LOC729970) 0.220528159368716 10 0.0979115814282344 1.31075599756393 529 0.405080154939228 6 5 1 -6.87240609473214 LTS-040 chr1 97187314 100676497 3489184 * c(LOC100129620, MIR2682, DPYD-AS1, LRRC39, DBT, PLPPR5, SASS6, AGL, DPYD, SLC35A3, FRRS1, MIR137HG, MIR137, SNX7, TRMT13, PALMD, PTBP2, MFSD14A, LOC729987, PLPPR4) 0.23613054333665 4 0.255777898445767 0.76775995629247 1376 0.222064549944304 2 2 0 -6.74604970666553 LTS-040 chr1 100676498 100817384 140887 * c(DBT, MIR553, CDC14A, RTCA) 0.397 1 NA 0.722013092048703 128 0.198909402847976 2 2 0 -5.77753425038784 LTS-040 chr1 100817385 120927095 20109711 * c(MIR942, LINC01349, LOC100129138, LINC01160, AP4B1-AS1, MIR320B1, MIR4256, FAM212B-AS1, VAV3-AS1, TSPAN2, LAMTOR5-AS1, BCAS2, WARS2, CEPT1, VAV3, LAMTOR5, AP4B1, PHTF1, AHCYL1, WDR3, MAN1A2, ADAM30, CHI3L2, DDX20, HENMT1, OLFM3, MAB21L3, ATXN7L2, C1orf194, HSD3BP4, DRAM2, PIFO, C1orf162, COL11A1, ADORA3, CSF1, SYT6, NBPF4, SLC30A7, CHIAP2, DENND2C, FNDC7, UBL4B, S1PR1, CELSR2, SPAG17, HIPK1, EXTL2, FCGR1B, NA NA NA NA NA NA NA NA NA LTS-040 NTNG1, WDR47, CLCC1, AKR7A2P1, AKNAD1, ALX3, MAGI3, PTPN22, PHGDH, AMPD1, AMPD2, CHIA, GNAI3, GNAT2, AMY2A, AMY2B, FAM19A3, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, HMGCS2, HSD3B1, HSD3B2, IGSF3, PPM1J, HIST2H2BA, MYBPHL, NBPF7, KCNA2, KCNA3, KCNA10, KCNC4, KCND3, SLC6A17, RHOC, MIR197, MOV10, LOC440600, BCL2L15, PGCP1, ATP1A1, NGF, NHLH2, NOTCH2, NRAS, OVGP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 HAO2, ATP5F1, TRIM33, DPH5, GPR88, RSBN1, GDAP2, FAM46C, ST7L, PRPF38B, PRMT6, SLC22A15, RNPC3, LRIF1, CTTNBP2NL, FAM212B, PSMA5, TMEM167B, OLFML3, PTGFRN, AMIGO1, KIAA1324, RAP1A, SORT1, SARS, SPATA42, CYMP, LOC643355, LOC643441, LINC00622, RBM15, DCLRE1B, ACTG1P4, NBPF6, FAM72B, SLC16A1, SCARNA2, STXBP3, SYCP1, TAF13, TBX15, TSHB, VCAM1, WNT2B, CSDE1, WDR77, EPS8L3, VTCN1, DENND2D, SIKE1, TRIM45, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 VANGL1, CAPZA1, GPR61, REG4, PROK1, CASQ2, TTF2, PSRC1, ATP1A1-AS1, STRIP1, CDC14A, ZNF697, SLC16A4, CD2, CD101, DNAJA1P5, CD53, CD58, LRIG2) 0.395447373165541 308 0.0790918281541452 0.769329898306084 13949 0.274711338652409 2 1 1 -6.8552071800803 LTS-040 NA NA NA NA LTS-040 chr1 120927096 121313547 386452 * c(SRGAP2D, FCGR1B, EMBP1) NA 0 NA 0.812806955861339 75 0.293855727302478 2 NA NA -5.76870102532412 LTS-040 chr1 143912360 144013853 101494 * FAM72D 0.311 1 NA 0.719487227862847 5 0.428865596661705 2 2 0 -5.76663370130088 LTS-040 chr1 144013854 144680028 666175 * c(NBPF20, LOC653513, NA, PFN1P2, PDE4DIP) 0.296 1 NA 0.706035205050354 34 0.484040769080361 2 2 0 -5.78170766926464 LTS-040 chr1 144680029 144851495 171467 * c(NBPF20, LOC653513, PDE4DIP) NA 0 NA 1.118 1 NA NA NA NA NA LTS-040 chr1 144851496 145282904 431409 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, SEC22B, PDE4DIP) 0.264442215359716 71 0.0897268759828506 1.15478150660075 655 0.516283731251376 5 4 1 -6.78962760853451 LTS-040 chr1 145282905 145283557 653 * c(NBPF10, NBPF20, NOTCH2NL) 0.339 1 NA 1.1207726612746 19 0.47211744004324 4 4 0 -5.7644146711574 LTS-040 chr1 145283558 145284585 1028 * c(NBPF10, NBPF20, NOTCH2NL) 0.433327488596242 5 0.0705492735611076 1.20477898821884 27 0.167213521652293 4 2 2 -6.74005621573179 LTS-040 chr1 145284586 158065846 12781261 * c(MIR190B, C1orf68, MSTO2P, LOC100132111, NBPF10, FCGR1CP, C2CD4D, NBPF20, LINC00624, MIR4257, MIR4258, LOC100505666, PMF1-BGLAP, TNFAIP8L2-SCNM1, SCAMP3, MIR5087, FALEC, SF3B4, ADAR, PIAS3, HAX1, C1orf61, SEMA6C, POLR3C, TXNIP, PMVK, FAM189B, NES, JTB, MTMR11, MLLT11, SLC27A3, TDRKH, CD160, CELF3, PMF1, GLMP, VPS45, CHRNB2, PGLYRP3, FCRL1, FCRL3, CKS1B, THEM4, CLK2, GABPB2, TCHHL1, RPTN, TDRD10, SHE, NA NA NA NA NA NA NA NA NA LTS-040 DCST2, LIX1L, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, CIART, HFE2, ANKRD35, NBPF12, LELP1, DCST1, BNIPL, LRRC71, CTSK, CTSS, SPRR4, TTC24, PDIA3P1, ECM1, EFNA1, EFNA3, EFNA4, LCE4A, NUDT17, KRTCAP2, CRTC2, ENSA, ETV3, FCGR1A, FDPS, KIAA0907, FLG, POGZ, SYT11, RPRD2, FMO5, SMG5, SNAPIN, RUSC1, CA14, LCE5A, NBPF14, C1orf43, CHTOP, LCE2B, GBA, GBAP1, GJA5, GJA8, SLC39A1, RNF115, RIIAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 THEM5, NBPF15, ANKRD34A, RUSC1-AS1, LAMTOR2, TMOD4, CERS2, HDGF, HIST2H2AB, HIST2H2BC, S100A7A, LINGO4, RXFP4, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3E, IL6R, CYCSP52, ILF2, INSRR, IVL, PEAR1, KCNN3, NOTCH2NL, LINC01138, LOC388692, LYSMD1, HRNR, FLG2, C1orf189, VHLL, LMNA, LOR, ARNT, MIR9-1, MCL1, SMCP, MEF2D, HIST2H2BF, ETV3L, KPRP, LCE6A, MTX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MUC1, NPR1, NTRK1, CRNN, BOLA1, ZBTB7B, RRNAD1, APH1A, PLEKHO1, ACP6, GPR89B, OAZ3, PDZK1, PI4KB, PKLR, DPM3, MRPS21, ADAMTSL4, CRCT1, GON4L, GPATCH4, C1orf56, MSTO1, GOLPH3L, KIRREL, YY1AP1, PRCC, UBE2Q1, PRKAB2, FAM63A, ASH1L, LENEP, SLC50A1, CDC42SE1, UBQLN4, PSMB4, OTUD7B, PSMD4, RAB25, PGLYRP4, RHBG, ATP8B2, LINC00869, PBXIP1, S100A14, PRR9, GATAD2B, CGN, ZNF687, HCN3, PRUNE1, RAB13, RFX5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RIT1, HAPLN2, BCL9, RORC, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A12, S100A13, BGLAP, BCAN, SEMA4A, NBPF13P, PPIAL4D, LOC645166, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, MRPL9, INTS3, GPR89A, HIST2H3D, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR554, MIR555, MIR92B, VPS72, THBS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TCHH, TPM3, CCT3, TUFT1, NA, NA, NA, NA, PPIAL4F, LOC728989, PPIAL4E, MIR765, DAP3, SCNM1, FCRL2, MRPL24, TNFAIP8L2, C1orf54, PAQR6, TRIM46, TARS2, FLAD1, SNX27, ANP32E, ISG20L2, HIST2H2AC, FCRL5, FCRL4, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, POLR3GL, TMEM79, LCE3D, ITGA10, ADAM15, PEX11B, AQP10, SELENBP1, SH2D2A, PYGO2, NUP210L, PRPF3, ARHGEF2, CD5L, MEX3A, CHD1L, SLC25A44, ARHGEF11, SETDB1, UBAP2L, SV2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DENND4B, RBM8A) 0.394132844904359 320 0.0874198952628879 1.4184688134852 19624 0.912835429801254 5 3 2 -6.76531807807936 LTS-040 NA NA NA NA LTS-040 chr1 158065847 158066042 196 * character(0) 0.474 1 NA 1.3699949666714 3 0.179305140286979 5 5 0 -5.76441026975367 LTS-040 chr1 158066043 158587407 521365 * c(OR10T2, OR6P1, OR10X1, OR10Z1, OR10R2, OR10K2, OR10K1, OR6Y1, LOC646268, SPTA1, CD1A, CD1B, CD1C, CD1D, CD1E) 0.460900326802242 30 0.0360963111433969 1.41470473323067 616 0.424576787563382 6 3 3 -7.2760640677894 LTS-040 chr1 158587408 161563331 2975924 * c(TSTD1, CADM3-AS1, LINC01133, MIR5187, SLAMF6, KLHDC9, OR10J5, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, FCER1A, FCER1G, FCGR2A, FCGR3A, NCSTN, ACKR1, ARHGAP30, CFAP126, CFAP45, OR10J1, USP21, C1orf204, APCS, HSPA6, APOA2, IFI16, FCRL6, KCNJ9, KCNJ10, OR6K3, VSIG8, LY9, MNDA, MPZ, OR10J3, NDUFS2, SUMO1P3, ATP1A2, ATP1A4, NHLH1, NIT1, DCAF8, F11R, UFC1, CD244, PFDN2, DUSP23, PPOX, ITLN1, SLAMF8, NA NA NA NA NA NA NA NA NA LTS-040 VANGL2, IGSF9, SLAMF7, CADM3, PEX19, SDHC, SLAMF1, PCP4L1, SPTA1, USF1, OR6N2, OR6K2, NECTIN4, TAGLN2, TOMM40L, CASQ1, PEA15, B4GALT3, CD84, SLAMF9, FCGR2C, DEDD, PIGM, IGSF8, AIM2, ADAMTS4, CD48, NR1I3) 0.426363486457263 84 0.105331923525573 1.30101228717618 5289 0.350249952316831 5 3 2 -6.79246104765113 LTS-040 NA NA NA NA LTS-040 chr1 161563332 161565301 1970 * FCGR2C NA 0 NA 1.033 1 NA NA NA NA NA LTS-040 chr1 161565302 161570686 5385 * FCGR2C 0.465 1 NA 0.835175876406281 39 0.778023198346933 2 2 0 -5.76443418947287 LTS-040 chr1 161570687 161570775 89 * FCGR2C NA 0 NA 1.158 1 NA NA NA NA NA LTS-040 chr1 161570776 172381599 10810824 * c(MIR921, MIR1295A, MIR3119-1, MIR3120, MIR3119-2, MIR3658, LOC100505795, LOC100505918, MIR4654, DNM3OS, MIR1295B, GPA33, SLC19A2, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, METTL11B, FAM78B, DPT, F5, FCGR2B, FCGR3B, ALDH9A1, KIFAP3, ATF6, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, OLFML2B, DNM3, TIPRL, C1orf111, LINC01142, NME7, HSPA7, CCDC190, SFT2D2, ILDR2, FMO6P, C1orf226, LOC400794, LMX1A, MGST3, NA NA NA NA NA NA NA NA NA LTS-040 LRRC52, LOC440700, MYOC, ATP1B1, DDR2, PBX1, HSD17B7, METTL13, PIGC, PRRX1, TMCO1, POU2F1, C1orf112, ADCY10, DCAF6, SCYL3, POGK, CCDC181, RGS4, RXRG, XCL1, SELE, SELL, SELP, RPL31P11, UAP1, XCL2, MIR556, MIR557, TOP1P1, UCK2, LINC00626, MROH9, NUF2, FCRLA, ANKRD36BP1, RGS5, MAEL, BLZF1, VAMP4, CREG1, MPZL1, TBX19, FCGR2C, CD247, DUSP27, RCSD1, METTL18, GORAB, NOS1AP) 0.427665161734603 199 0.0704045190648733 1.30809637011126 7165 0.380780630503523 5 3 2 -6.88295960456326 LTS-040 NA NA NA NA LTS-040 chr1 172381600 175097744 2716145 * c(LOC100506023, GAS5-AS1, RC3H1, DNM3, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, CACYBP, KLHL20, SLC9C2, ANKRD45, FASLG, SERPINC1, SUCO, PIGC, DARS2, GAS5, SNORD74, TNN, MRPS14, SNORD75, SNORD76, SNORD77, SNORD78, TNFSF4, LOC730159, ZBTB37, TNFSF18, CENPL, C1orf105, GPR52, PRDX6, RABGAP1L) 0.417985584837868 26 0.152184771299183 1.2352129527726 1950 0.311376938744037 4 2 2 -6.77051624611727 LTS-040 chr1 175097745 178888708 3790964 * c(RASAL2-AS1, MIR4424, C1orf220, ASTN1, RALGPS2, MIR488, BRINP2, PAPPA2, TNN, RFWD2, SCARNA3, TNR, LOC730102, TEX35, SEC16B, ANGPTL1, RASAL2, KIAA0040) 0.442446658029133 36 0.0426790532615426 1.40524468501962 1689 0.679854562175286 6 3 3 -6.88917334708721 LTS-040 chr1 178888709 186113852 7225144 * c(GM140, GS1-279B7.1, MIR548F1, MIR3121, LHX4-AS1, ARPC5, STX6, IVNS1ABP, TSEN15, FAM129A, AXDND1, ZNF648, TEDDM1, FAM163A, TDRD5, TOR1AIP2, DHX9, FLJ23867, NMNAT2, COLGALT2, RGL1, TOR1AIP1, ABL2, GLUL, LOC284648, SMG7-AS1, MR1, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, NCF2, IER5, SWT1, RALGPS2, QSOX1, KIAA1614, RGS16, RNASEL, RNF2, TOR3A, SOAT1, CACNA1E, NPHS2, EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, NA NA NA NA NA NA NA NA NA LTS-040 HMCN1, ACBD6, RGS8, LHX4, XPR1, CEP350, SMG7, FAM20B) 0.427498600289127 160 0.0997385134698848 1.31033780644546 6966 0.345052336038833 5 3 2 -6.83949681109879 LTS-040 NA NA NA NA LTS-040 chr1 186113853 186159082 45230 * c(MIR548F1, HMCN1) 0 1 NA 1.28761245526748 91 0.570803784535072 5 5 0 -5.76479649545665 LTS-040 chr1 186159083 192154717 5995635 * c(MIR548F1, RNU6-72P, PRG4, OCLM, BRINP3, LOC440704, PDC, PLA2G4A, C1orf27, PTGS2, RGS18, TPR, HMCN1) 0.34262994351988 11 0.215818189476909 1.29473377802354 830 0.441846809562231 5 4 1 -6.84940678298418 LTS-040 chr1 192154718 196716508 4561791 * c(MIR1278, MIR4735, CFHR4, CFH, KCNT2, RGS21, GLRX2, UCHL5, RGS1, RGS2, RGS13, RGS18, TROVE2, CDC73, B3GALT2) 0.351148473317796 7 0.0597072221841912 1.15257627217186 889 0.314641259394114 4 3 1 -6.81813474407312 LTS-040 chr1 196716509 196801352 84844 * c(CFHR4, CFHR3, CFH, CFHR1) NA 0 NA 0.710344884347301 117 0.236040853262899 2 NA NA -5.77260223677844 LTS-040 chr1 196801353 196857129 55777 * CFHR4 NA 0 NA 1.073 1 NA NA NA NA NA LTS-040 chr1 196857130 198289468 1432339 * c(CFHR4, NEK7, DENND1B, F13B, CRB1, ASPM, CFHR2, ZBTB41, C1orf53, LHX9, CFHR5) 0.324001791855475 17 0.157702344344543 1.11542969985126 1342 0.373324382459467 4 3 1 -6.7530736180404 LTS-040 chr1 198289469 199998281 1708813 * c(MIR181A1HG, ATP6V1G3, NEK7, NR5A2, MIR181B1, MIR181A1, PTPRC) 0.369 1 NA 1.09132279446061 283 0.358691057235557 4 4 0 -5.81185789508311 LTS-040 chr1 199998282 200827801 829520 * c(CAMSAP2, ZNF281, NR5A2, LINC00862, DDX59, KIF14) 0.39598513410244 8 0.0266283951557624 1.14778698875247 659 0.291581259110554 3 2 1 -6.89018746824929 LTS-040 chr1 200827802 200827806 5 * CAMSAP2 NA 0 NA 1.186 1 NA NA NA NA NA LTS-040 chr1 200827807 202287903 1460097 * c(MIR1231, MIR5191, TIMM17A, ARL8A, CSRP1, PTPRVP, SHISA4, ELF3, KIF21B, CAMSAP2, PHLDA3, TMEM9, LMOD1, GPR25, RPS10P7, LAD1, PKP1, IPO9, C1orf106, PTPN7, LGR6, RNPEP, ASCL5, TNNI1, TNNT2, CACNA1S, NAV1, IGFN1, GPR37L1) 0.367780731697081 60 0.0904637518317709 1.23801876720921 2757 0.296226135338787 4 3 1 -6.85660419543845 LTS-040 chr1 202287904 215240105 12952202 * c(ZBED6, MIR4260, MIR3122, PCAT6, LINC00538, LRRN2, CENPF, KDM5B, IL24, CHI3L1, CHIT1, SLC26A9, SYT2, LINC00628, GOLT1A, TATDN3, ADORA1, CR1, CR1L, CR2, C1orf74, LOC148696, LOC148709, MFSD4A, PM20D1, SPATA45, FAM71A, CTSE, CD55, EIF2D, ELK4, PLEKHA6, NFASC, FMOD, SRGAP2, SLC41A1, SYT14, DSTYK, INTS7, NSL1, OPTC, RPS6KC1, DIEXF, LINC00303, LEMD1-AS1, LOC284578, LOC284581, FLVCR1, UBE2T, NENF, IL19, NA NA NA NA NA NA NA NA NA LTS-040 HSD11B1, RD3, IL10, IRF6, KCNH1, KCNK2, KISS1, TMEM81, LAMB3, NA, MIR205, MIR29C, CD46, MDM4, C1orf186, MIR135B, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, ATP2B4, G0S2, IL20, ADIPOR1, CDK18, DTL, CYB5R1, PFKFB2, PIGR, PIK3C2B, PLXNA2, LAX1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, HHAT, RCOR3, SERTAD4, PROX1, SMYD2, CAMK1G, SERTAD4-AS1, PTPN14, RABIF, RBBP5, KLHL12, LGR6, REN, MGAT4EP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MIR205HG, FLVCR1-AS1, NUCKS1, SRGAP2C, SNRPE, SNORA77, CNTN2, SNORA16B, TRAF5, C4BPA, C4BPB, FAM72A, LINC01136, SLC30A1, BTG2, C1orf116, VASH2, TRAF3IP3, NUAK2, RASSF5, FCAMR, DYRK3, LINC00260, LINC00467, PPP1R15B, PPFIA4, SLC45A3, RAB29, ANGEL2, FCMR, MAPKAPK2, TMEM183A, LEMD1, CD34, SOX13, IKBKE, ZC3H11A, TMCC2, LPGAT1) 0.372707210259955 270 0.0857023002182635 1.17208147926186 12249 0.293059064783852 4 3 1 -6.87826219599736 LTS-040 NA NA NA NA LTS-040 chr1 215240106 218617994 3377889 * c(LINC00210, SPATA17, ESRRG, KCNK2, RRP15, KCTD3, GPATCH2, TGFB2, TGFB2-AS1, USH2A) 0.368377282188093 16 0.0509129976855943 1.2491578726548 1432 0.331135023391058 4 3 1 -7.10820227801101 LTS-040 chr1 218617995 218683322 65328 * character(0) NA 0 NA 0.836 1 NA NA NA NA NA LTS-040 chr1 218683323 237519435 18836113 * c(NA, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR320B2, MIR3620, LINC01354, LINC01132, MIR4753, MIR4666A, MIR4671, MIR4427, MIR4742, MIR5008, BPNT1, LEFTY1, SPHAR, CAPN9, DUSP10, LYST, SNAP47, CCSAP, LYPLAL1, DNAH14, C1orf131, EDARADD, MRPL55, HIST3H2BB, PARP1, BROX, SLC35F3, B3GALNT2, CNIH3, EXOC8, LOC149373, RNF187, SDE2, CCDC185, AGT, IBA57, EPHX1, EPRS, COG2, RBM34, FBXO28, ABCB10, NA NA NA NA NA NA NA NA NA LTS-040 RAB3GAP2, GALNT2, RNU5F-1, TAF5L, DISC2, DISC1, GNG4, LIN9, CNIH4, GUK1, PYCR2, H3F3A, HLX, ZNF678, PRSS38, IRF2BP2, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNK1, CAPN8, COA6, LBR, LGALS8, C1orf140, FAM177B, ZNF847P, MIR194-1, MIR215, MARK1, TRIM67, H3F3AP4, MTR, NID1, NVL, TRIM17, ARID4B, EGLN1, MAP10, MARC2, SUSD4, HEATR1, SLC30A10, IARS2, ENAH, NUP133, ERO1B, PSEN2, COQ8A, GJC2, DUSP5P1, C1orf145, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SIPA1L2, ACTA1, RHOU, RAB4A, RYR2, LYPLAL1-AS1, SNRPD2P2, MT1HL1, ACBD3, MARC1, ARV1, AIDA, JMJD4, SRP9, SNORA14B, SNORA36B, AURKAPS1, TARBP1, TBCE, LEFTY2, TLR5, GPR137B, TP53BP2, TSNAX, WNT9A, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, PCNX2, WDR26, TRIM11, CAPN2, HIST3H3, MIXL1, SPRTN, OBSCN, NTPCR, GNPAT, MLK4, CDC42BPA, C1orf198, DISP1, DEGS1, ACTN2, WNT3A, TAF1A, HIST3H2A, GGPS1, TMEM63A, TOMM20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 URB2) 0.378622176499439 346 0.0711474981341092 1.15644756398195 14199 0.323185727245886 4 2 2 -7.02568855654088 LTS-040 NA NA NA NA LTS-040 chr1 237519436 237527561 8126 * RYR2 NA 0 NA 1.973 1 NA NA NA NA NA LTS-040 chr1 237527562 237551376 23815 * RYR2 0.31 1 NA 1.34346661629266 27 0.23834461153161 5 5 0 -5.7645755691486 LTS-040 chr1 237551377 237617757 66381 * RYR2 0.383 1 NA 1.19480427082441 27 0.241610096532489 4 4 0 -5.76452763516596 LTS-040 chr1 237617758 249145205 11527448 * c(AKT3, LOC100130331, MIR3123, MIR3124, MIR3916, ZNF670-ZNF695, MIR4677, ZBTB18, SDCCAG8, CHML, CHRM3, NLRP3, COX20, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2B11, WDR64, GCSAML, GCSAML-AS1, LINC01341, ADSS, CNST, PLD5, C1orf100, FH, OPN3, OR2T6, LOC255654, C1orf101, TRIM58, AHCTF1, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, OR2L13, OR14A16, NA, HNRNPU, LOC339529, LINC01139, OR6F1, OR2W3, NA NA NA NA NA NA NA NA NA LTS-040 OR2T8, OR2T3, OR2T29, C1orf229, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, MAP1LC3C, OR2W5, OR13G1, DESI2, SCCPDH, KIF26B, ZNF692, FMN2, ZNF695, ZP4, RGS7, RYR2, TFB2M, GREM2, RPS7P5, LYPD8, SMYD3, LINC01347, ZNF124, ZNF669, ZNF672, SH3BP5L, OR2L5, OR2G3, OR2G2, OR2C3, EFCAB2, ZNF496, KMO, EXO1, ZNF670, CEP170) 0.422392681137442 137 0.0654774026159225 1.33889886218484 5828 0.413127816417757 5 3 2 -6.78235951049827 LTS-040 NA NA NA NA LTS-040 chr1 249145206 249214134 68929 * c(PGBD2, ZNF692) NA 0 NA 1.17303095697535 131 0.220486322830897 4 NA NA -5.76443374399559 LTS-040 chr2 38824 1079143 1040320 * c(TMEM18, SH3YL1, FAM150B, LINC01115, ACP1, SNTG2, FAM110C) 0.31 1 NA 0.996392570826963 363 0.228663784299007 3 3 0 -5.76765886567701 LTS-040 chr2 1079144 7471640 6392497 * c(LINC01304, RNASEH1-AS1, CMPK2, LINC01105, MYT1L, RNASEH1, RNF144A-AS1, LOC400940, LINC00487, TRAPPC12, SNTG2, ADI1, ALLC, RPS7, SOX11, TPO, TSSC1, LINC01249, MYT1L-AS1, PXDN, COLEC11, RSAD2, RNF144A) 0.302627303779927 70 0.073217303275693 1.09056727591976 1829 0.341480630528914 4 3 1 -7.01344201431903 LTS-040 chr2 7471641 7540572 68932 * character(0) NA 0 NA 0.81 1 NA NA NA NA NA LTS-040 chr2 7540573 11702711 4162139 * c(SNORA80B, MIR4261, LOC100506274, MIR4429, LINC00570, PDIA6, YWHAQ, MBOAT2, C2orf50, PQLC3, E2F6, CYS1, ATP6V1C2, IAH1, FLJ33534, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, C2orf48, KCNF1, ODC1, CPSF3, KIDINS220, RRM2, ADAM17, NOL10, KLF11, ASAP2, TAF1B, ITGB1BP1, ROCK2, GREB1) 0.3165302598467 57 0.0666380217282118 1.00398539935223 2528 0.28036980055342 3 2 1 -7.433760947376 LTS-040 chr2 11702712 11706582 3871 * GREB1 NA 0 NA 1.481 1 NA NA NA NA NA LTS-040 chr2 11706583 27745515 16038933 * c(OST4, MIR1301, MIR3125, MIR4262, GTF3C2-AS1, LOC100506474, NT5C1B-RDH14, MIR4757, PREB, MYCNOS, CENPA, CGREF1, RAB10, ADCY3, EMILIN1, KLHL29, CIB4, OSR1, TTC32, ZNF513, TCF23, GAREM2, FAM84A, GDF7, ADGRF3, DDX1, UBXN2A, DNMT3A, DTNB, KRTCAP3, FKBP1B, MAPRE3, EFR3B, LPIN1, PUM2, NTSR2, FTH1P3, IFT172, GCKR, DNAJC5G, TRIB2, GTF3C2, NRBP1, HADHA, HADHB, APOB, C2orf70, PRR30, MSGN1, GEN1, PFN4, FAM228B, NA NA NA NA NA NA NA NA NA LTS-040 KCNK3, KCNS3, KHK, KIF3C, RHOB, MFSD2B, PTRHD1, LINC00954, MATN3, MPV17, MYCN, ITSN2, DNAJC27, ATRAID, NBAS, SF3B6, POMC, ATAD2B, TMEM214, PPM1G, SLC35F6, ASXL2, DPYSL5, TRIM54, WDR35, RDH14, AGBL5, LDAH, SDC1, HS1BP3, LOC645949, FNDC4, FAM228A, RAD51AP2, DNAJC27-AS1, UCN, VSNL1, SLC30A3, CAD, CENPO, SMC6, WDCP, FAM49A, ABHD1, SELENOI, NCOA1, SLC5A6, EIF2B4, DRC1, NT5C1B, OTOF, TP53I3, GREB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LAPTM4A, SNX17) 0.2701113500406 206 0.0643804898870468 1.18417974246192 10004 0.314916993757267 4 3 1 -7.2214921045004 LTS-040 NA NA NA NA LTS-040 chr2 27745516 27746079 564 * GCKR NA 0 NA 1 1 NA NA NA NA NA LTS-040 chr2 27746080 27917641 171562 * c(GPN1, SLC4A1AP, GCKR, CCDC121, C2orf16, ZNF512, SUPT7L) 0.309116414699506 14 0.0429827463468365 1.06467769630243 638 0.237091438544393 4 3 1 -6.89746351584322 LTS-040 chr2 27917642 27928797 11156 * SLC4A1AP 0.211 1 NA 1.40994442232251 9 0.488665273986192 5 5 0 -5.76442451408562 LTS-040 chr2 27928798 28634790 705993 * c(BRE-AS1, MIR4263, LOC100505716, FOSL2, RBKS, MRPL33, BRE) 0.459 1 NA 1.24206230498871 295 0.212999466694581 4 4 0 -5.78946834252929 LTS-040 chr2 28634791 30864983 2230193 * c(PLB1, FAM179A, WDR43, FOSL2, ALK, SPDYA, LCLAT1, SNORD53, C2orf71, YPEL5, PPP1CB, TRMT61B, SNORD92, CLIP4, LBH) 0.354889147214736 51 0.0908583426624795 1.2724087619924 1657 0.354052308212424 4 3 1 -6.8369565241024 LTS-040 chr2 30864984 30866409 1426 * LCLAT1 0.345835999498024 2 0.0862670273047588 0.567532994868121 39 0.479900366402667 15 10 5 -6.74685389019541 LTS-040 chr2 30866410 30866486 77 * LCLAT1 NA 0 NA 1.323 1 NA NA NA NA NA LTS-040 chr2 30866487 31628853 762367 * c(LCLAT1, EHD3, CAPN14, XDH, GALNT14, CAPN13) 0.314591916097932 14 0.138496102218331 1.39250398822524 665 0.315421023487905 5 4 1 -6.76402070740337 LTS-040 chr2 31628854 31637401 8548 * XDH NA 0 NA 0.918 1 NA NA NA NA NA LTS-040 chr2 31637402 60688862 29051461 * c(MIR216B, SLC8A1-AS1, LINC01126, LINC01119, ARHGEF33, LOC100271832, LOC100288911, MIR3682, CEBPZOS, MIR4765, MIR4432, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, GPR75, GTF2A1L, STON1, CFAP36, CCDC85A, PPP1R21, C2orf73, CLHC1, PLEKHH2, GALM, TMEM178A, MYADML, RMDN2, CYP1B1, OXER1, KCNG3, EPAS1, EFEMP1, PSME4, RHOQ, HAAO, PRKD3, FSHR, GPATCH11, RASGRP3, QPCT, FAM98A, ERLEC1, EML4, LINC00486, C2orf61, NA NA NA NA NA NA NA NA NA LTS-040 CYP1B1-AS1, STON1-GTF2A1L, MSH6, FOXN2, CDKL4, PRORSD1P, LOC375196, LOC388942, TMEM247, LINC01118, TSPYL6, SULT6B1, LHCGR, C2orf91, LINC01121, EML6, LINC01122, LTBP1, MIR216A, MIR217, EPCAM, MSH2, MTIF2, CHAC2, MEMO1, ASB3, CRIM1, DYNC2LI1, VIT, PIGF, BCL11A, HEATR5B, PPM1B, FANCL, SRBD1, NDUFAF7, TTC27, SLC30A6, CCDC88A, PRKCE, EIF2AK2, KCNK12, RPL23AP32, RTN4, TTC7A, PPP4R3B, BIRC6, MTA3, NLRC4, RPS27A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, SPAST, SPTBN1, SRD5A2, ZFP36L2, STRN, MIR558, MIR559, LOC728730, C1GALT1C1L, MORN2, VRK2, XDH, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, YIPF4, DPY30, MAP4K3, PNPT1, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, CRIPT, PREPL, FEZ2, SOCS5, ACYP2) 0.351297899460066 205 0.0850544518529722 1.27731735118038 12826 0.665933127773335 4 3 1 -7.00958464957963 LTS-040 NA NA NA NA LTS-040 chr2 60688863 70889548 10200686 * c(SNORA36C, SNORA70B, LOC100132215, LOC100133985, DBIL5P2, MIR3126, MIR4434, MIR4778, MIR5192, ACTR2, C1D, CCT4, B3GNT2, PROKR1, SNRNP27, WDR92, ADD2, AHSA2, COMMD1, PUS10, LINC00309, ASPRV1, GKN2, APLF, TMEM17, SPRED2, AAK1, CEP68, EHBP1, CNRIP1, GFPT1, NFU1, BMP10, LGALSL, ANXA4, LOC339803, C2orf74, LOC339807, LINC01185, LOC400958, PCBP1-AS1, MXD1, MDH1, MEIS1, OTX1, PCBP1, WDPCP, PCYOX1, VPS54, PEX13, NA NA NA NA NA NA NA NA NA LTS-040 BCL11A, PLEK, ETAA1, AFTPH, C2orf42, PPP3R1, FBXO48, GKN1, PNO1, PELI1, RAB1A, REL, GMCL1, LOC644838, PAPOLG, SLC1A4, SNRPG, TGFA, TIA1, MEIS1-AS3, UGP2, XPO1, FAM161A, ANTXR1, KIAA1841, FAM136A, USP34, SERTAD2, ARHGAP25) 0.35888443432435 61 0.122935064382156 1.11826281875457 5875 0.317181124529446 4 3 1 -6.93147845655198 LTS-040 NA NA NA NA LTS-040 chr2 70889549 73493214 2603666 * c(MPHOSPH10, SMYD5, CCT7, TEX261, ADD2, FBXO41, CLEC4F, EMX1, EXOC6B, VAX2, RAB11FIP5, ZNF638, FIGLA, NOTO, PAIP2B, CD207, ATP6V1B1, NAGK, CYP26B1, SPR, OR7E91P, ANKRD53, DYSF, PRADC1, MCEE, SFXN5) 0.390209766474859 71 0.0734544987068981 1.21635464925447 2568 0.309088130375921 4 2 2 -6.88555103275947 LTS-040 chr2 73493215 73493651 437 * FBXO41 NA 0 NA 0.893 1 NA NA NA NA NA LTS-040 chr2 73493652 87408318 13914667 * c(SNAR-H, DCTN1-AS1, ANAPC1P1, MIR4264, BOLA3-AS1, RNF103-CHMP3, INO80B-WBP1, MIR4779, PARTICL, MIR5000, SEMA4F, GNLY, STAMBP, TGOLN2, USP39, VAMP5, MTHFD2, IMMT, MRPL53, TRABD2A, TMEM150A, REG3G, M1AP, CTNNA2, FBXO41, LBX2-AS1, DCTN1, DQX1, DGUOK, DHFRP3, DNAH6, DOK1, EGR4, ALMS1P1, TET3, WBP1, POLR1A, GGCX, HTRA2, SH2D6, LOC284950, LOC285074, HK2, TLX2, LRRTM1, C2orf78, BOLA3, C2orf81, FUNDC2P2, C2orf68, NA NA NA NA NA NA NA NA NA LTS-040 MAT2A, REG3A, TPRKB, RNF181, MRPL35, CHMP3, RETSAT, AUP1, PTCD3, MOB1A, KDM3A, POLE4, KCMF1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, SFTPB, TTC31, RMND5A, REEP1, TACR1, SNORD94, GCFC2, ACTG2, ALMS1, MOGS, RNF103, LRRTM4, CAPG, TCF7L1, INO80B, WDR54, EVA1A, ELMOD3, DUSP11, LOXL3, PCGF1, CCDC142, ATOH8, LBX2, VAMP8, SUCLG1, ST3GAL5, NAT8, LOC90784, TMSB10, CD8A, CD8B, MRPL19) 0.375537577300506 77 0.0849345934673506 1.14943146016404 7044 0.310157787130002 4 3 1 -6.95324019200632 LTS-040 NA NA NA NA LTS-040 chr2 87408319 87408572 254 * RMND5A NA 0 NA 0.569 1 NA NA NA NA NA LTS-040 chr2 87408573 87426218 17646 * RMND5A 0.385600368376984 2 0.00636396103067893 0.6057304673672 76 0.409491811712578 16 10 6 -6.98172754917529 LTS-040 chr2 87426219 91937761 4511543 * c(MIR4436A, MIR4780, CYTOR, SMYD1, TEX37, FABP1, RPIA, FOXI3, KRCC1, THNSL2, ANKRD36BP2, RMND5A, LOC654342, EIF2AK3) 0.355087082329041 39 0.0961133145342997 1.23022053611571 959 0.821283621229032 4 3 1 -6.77912041647697 LTS-040 chr2 91937762 91955470 17709 * character(0) NA 0 NA 1.19519842270463 16 0.266949651932095 4 NA NA -5.76443711892579 LTS-040 chr2 95537183 95537245 63 * c(TEKT4, LOC442028) 0.462 1 NA 1.48 1 NA NA NA NA NA LTS-040 chr2 95537246 97827866 2290621 * c(MIR3127, ARID5A, TRIM43, TEKT4, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, DUSP2, ANKRD23, SNRNP200, NCAPH, CNNM4, CNNM3, STARD7-AS1, KCNIP3, ANKRD36, MAL, ASTL, LOC442028, FAHD2A, ANKRD39, FAM178B, SEMA4C, TMEM127, KANSL3, STARD7, MRPS5, TRIM43B, FAHD2CP, ZNF2, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1) 0.356562320699893 56 0.116303441842516 1.08172900144559 3006 0.287786415187853 4 3 1 -6.88404238577466 LTS-040 chr2 97827867 97877478 49612 * ANKRD36 0.270407371863193 2 0.0113137084989848 0.799044643454699 26 0.178165648938112 9 7 2 -7.55340873725125 LTS-040 chr2 97877479 98264857 387379 * c(COX5B, ANKRD36, ANKRD36B) 0.458 1 NA 0.880056755292256 67 0.797951848725608 3 3 0 -5.76863765520383 LTS-040 chr2 98264858 130900955 32636098 * c(RAB6C-AS1, RNU4ATAC, BCL2L11, LOC100287010, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100499194, LINC01158, LOC100507334, MIR4772, MIR4783, MIR4782, MIR5696, ACTR3, ACTR1B, TXNDC9, MERTK, MAP3K2, EDAR, TBC1D8, RABL2A, GPR45, MGAT4A, RPL23AP7, CNGA3, NMS, LYG1, MITD1, CNTNAP5, FBLN7, C2orf76, TMEM182, TMEM37, TTL, CKAP2L, CBWD2, LINC01102, C2orf15, LINC01106, SEPT10, SULT1C2P1, DBI, LONRF2, CCDC138, C1QL2, NA NA NA NA NA NA NA NA NA LTS-040 FOXD4L1, CFAP221, VWA3B, CREG2, EN1, LINC00116, ERCC3, FHL2, CLASP1, TMEM131, PSD4, NIFK-AS1, LYG2, UNC50, IL36RN, IL36B, IL37, IL36A, SULT1C4, GLI2, BIN1, GPR17, RNF149, LINC01114, LOC285000, MED15P9, PLGLA, RGPD4, TFCP2L1, GYPC, CYP27C1, KIAA1211L, SH3RF3, IL1A, IL1B, IL1R1, IL1RN, INHBB, INPP4A, WASH2P, ZC3H6, SLC9A4, DPP10-AS1, LOC389033, AFF3, LIMS1, FLJ42351, LINC01191, FAR2P1, SULT1C3, MYO7B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NPAS2, NPHP1, COA5, INSIG2, MRPL30, REV1, LIPT1, MIR4435-2HG, POLR2D, CCDC93, POU3F3, STEAP3, ACOXL, WDR33, CNOT11, IWS1, LIMS2, PROC, IL36G, UGGT1, DPP10, EPB41L5, PTPN4, RALB, RANBP2, SLC5A7, RPL31, SCTR, ANAPC1, MRPS9, SOWAHC, RGPD3, FAM138B, PAX8-AS1, SLC9A2, SLC20A1, SULT1C2, SNORD89, BUB1, TSN, RGPD8, POTEF, LINC01125, RGPD4-AS1, RFX8, ZAP70, PAX8, IL1R2, MALL, PDCL3, C2orf49, TMEM185B, SAP130, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 UXS1, SLC35F5, TSGA10, TMEM177, AMMECR1L, RAB6C, POLR1B, CHCHD5, NIFK, NCK2, C2orf40, ZC3H8, ST6GAL2, IL1F10, DDX11L2, MFSD9, SFT2D3, TMEM87B, LINC01101, MARCO, IL18RAP, IL1RL2, IL18R1, DDX18, CCDC74B, IL1RL1, TGFBRAP1, HS6ST1, MAP4K4, CHST10, GCC2, EIF5B) 0.406398072771572 375 0.0937005068500551 0.830153943520517 15195 0.54672378721732 2 1 1 -6.99352303309586 LTS-040 NA NA NA NA LTS-040 chr2 130900956 130901978 1023 * CCDC74B NA 0 NA 0.249 1 NA NA NA NA NA LTS-040 chr2 130901979 130909608 7630 * c(SMPD4, CCDC74B) NA 0 NA 0.384110377431187 42 0.271039326468412 0 NA NA -5.76441102268909 LTS-040 chr2 130909609 165539171 34629563 * c(TANK, CCNT2-AS1, CYP4F30P, LOC100144595, FAR2P2, ZEB2-AS1, MIR663B, MIR3679, LOC100507600, LY75-CD302, MIR4785, MIR4784, MIR4773-1, MIR4773-2, PSMD14, STAM2, TBR1, GALNT5, NXPH2, TUBA3E, TUBA3D, FMNL2, GALNT13, LYPD1, ACMSD, FAM168B, ACVR1C, LYPD6, LYPD6B, CCDC148, LOC150776, WTH3DI, ARL6IP6, WDSUB1, UPP2, DARS, DPP4, AMER3, FAP, PLA2R1, RAB3GAP1, UBXN4, R3HDM1, GCA, EPC2, ARL5A, GCG, PTPN18, MMADHC, NA NA NA NA NA NA NA NA NA LTS-040 GPD2, AHCTF1P1, GPR39, GRB14, C2orf27A, BAZ2B, HNMT, SPOPL, NCKAP5, GPR148, ITGB6, RBM43, KCNJ3, KIF5C, LINC01120, RND3, LCT, NOC2LP2, TEX41, LY75, MIR128-1, C2orf27B, MCM6, MGAT5, LOC440910, POTEE, NEB, NR4A2, ORC4, ARHGEF4, LRP1B, PLEKHB2, FIGN, RIF1, CCDC148-AS1, ANKRD30BL, SMPD4, PRPF40A, MBD5, ARHGAP15, CFC1, RPRM, SLC4A10, ERMN, RBMS1, IFIH1, YY1P2, MARCH7, POTEI, CFC1B, POTEJ, MZT2A, TNFAIP6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PABPC1P2, CACNB4, CXCR4, GTDC1, MZT2B, MAP3K19, THSD7B, TMEM163, ZRANB3, CCDC115, PKP4, TANC1, KYNU, ACVR1, KCNH7, CCNT2, CCDC74A, NMI, ACVR2A, DAPL1, IMP4, CYTIP, ZEB2, CD302) 0.397015433521842 166 0.100303987938412 0.837358668178425 12260 0.222071161783416 2 1 1 -8.34378987604346 LTS-040 NA NA NA NA LTS-040 chr2 165539172 165539174 3 * character(0) NA 0 NA 1.066 1 NA NA NA NA NA LTS-040 chr2 165539175 165544333 5159 * c(SNORA70F, COBLL1) 0.456005050633883 2 0.0494974746830583 1.21886454354203 72 0.447885386067918 4 2 2 -6.95001174948573 LTS-040 chr2 165544334 183951865 18407532 * c(MIR933, LOC100130691, SP9, MIR1246, MIR548N, MIR1258, MIR3128, NA, LOC100506124, TTC21B-AS1, HOXD-AS2, TTN-AS1, PHOSPHO2-KLHL23, MIR4437, MIR4774, CERS6-AS1, DHRS9, KLHL41, UBE2E3, MTX2, NCKAP1, RAPGEF4, CHN1, CHRNA1, OSBPL6, NOSTRIN, XIRP2, RBM45, BBS5, CCDC173, UBR3, ATF2, MYO3B, DUSP19, TTC30B, ZNF385B, KLHL23, PPP1R1C, SLC38A11, GPR155, DLX1, DLX2, DYNC1I2, HNRNPA3, COBLL1, FRZB, CERS6, METAP1D, GAD1, NA NA NA NA NA NA NA NA NA LTS-040 GALNT3, GORASP2, STK39, CCDC141, LINC01305, METTL5, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, MLK7-AS1, EVX2, ITGA6, ITGA4, LINC01116, CERKL, SP5, HAGLR, LRP2, MIR10B, LINC01124, NEUROD1, NFE2L2, PHOSPHO2, DFNB59, PDE11A, PDE1A, PDK1, FKBP7, ZAK, ATP5G3, DNAJC10, SPC25, CWC22, G6PC2, SCN1A, SCN2A, SCN3A, SCN7A, SCN9A, PLEKHA3, SP3, SSB, SSFA2, TTN, WIPF1, SCRN3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FASTKD1, TTC21B, METTL8, CYBRD1, CSRNP3, DCAF17, LNPK, CDCA7, HAT1, AGPS, PRKRA, SLC25A12, ABCB11, B3GALT1, RAPGEF4-AS1, SESTD1, TTC30A, PPIG, CIR1, TLK1) 0.425948642150902 212 0.069278566720521 0.817712259272603 14636 0.272521695834451 2 1 1 -7.03235100664762 LTS-040 NA NA NA NA LTS-040 chr2 183951866 190788447 6836582 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, FAM171B, SLC40A1, ITGAV, FSIP2, GULP1, PMS1, ASNSD1, ZC3H15, OSGEPL1, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.403117697493491 57 0.0910098007611623 0.870947652400323 2982 0.465254533994558 2 1 1 -6.98711929315641 LTS-040 chr2 190788448 190920601 132154 * MSTN NA 0 NA 0.819 1 NA NA NA NA NA LTS-040 chr2 190920602 203826688 12906087 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, PCGEM1, NA NA NA NA NA NA NA NA NA LTS-040 NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, CARF, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.410140797774424 134 0.0903376976596654 0.79032277036213 7923 0.231372334055462 2 1 1 -6.77130245381271 LTS-040 NA NA NA NA LTS-040 chr2 203826689 242433287 38606599 * c(LOC100129175, PP14571, LOC100130451, LOC100286922, MIR1471, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, MIR4269, LOC100507443, IDH1-AS1, UBE2F-SCLY, FARSB, ABCB6, MIR4439, MIR4776-1, MIR4777, MIR2467, MIR4775, MIR4440, MIR4786, MIR4776-2, MIR4441, MIR5702, MIR5703, VWC2L-IT1, ARPC2, ARL4C, ABI2, RAMP1, SPEG, LANCL1, NMUR1, COPS8, CAPN10, SP140, CHRND, CHRNG, STK11IP, MOGAT1, NA NA NA NA NA NA NA NA NA LTS-040 AGAP1, TWIST2, PARD3B, COL4A3, COL4A4, COL6A3, DIS3L2, AP1S3, SGPP2, SPATA3, TMEM198, ZFAND2B, CPO, MDH1B, FBXO36, MTERF4, CPS1, CREB1, AAMP, UBE2F, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, OTOS, COPS9, OR6B3, LOC150935, PKI55, KANSL1L, LINC01107, LOC151174, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, SLC16A14, LOC151475, LINC00471, LOC151484, MSL3P1, CYP27A1, DAW1, C2orf57, DES, AGXT, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 EEF1B2, PIKFYVE, LOC200726, TIGD1, LOC200772, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, PASK, FN1, OBSL1, DNPEP, SH3BP4, KCNE4, ALPI, ALPP, ALPPL2, CFAP65, C2orf72, NGEF, SNORD82, PNKD, SNED1, GIGYF2, TRAF3IP1, ABCA12, GBX2, SNORD51, CNPPD1, STK36, GPC1, GPR1, UNC80, RUFY4, DUSP28, GPR35, CPS1-IT1, ICOS, GMPPA, HDLBP, AGFG1, ACADL, DNAJB2, HTR2B, ESPNL, IDH1, SP110, ECEL1P2, IGFBP2, SPATA3-AS1, IGFBP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 IHH, CXCR1, CXCR2, CXCR2P1, INHA, INPP5D, IRS1, CATIP, RBM44, AQP12A, KCNJ13, KLHL30, PLEKHM3, C2orf80, RESP18, C2orf82, OR6B2, DYTN, ASB18, FLJ43879, VWC2L, MIR149, MIR153-1, MIR26B, MAP2, DNAJB3, MYL1, NCL, NDUFA10, ATIC, NDUFS1, SEPT2, NEU2, NPPC, MIR375, SMARCAL1, ANO7, PAX3, PRLH, ANKMY1, PDE6D, SCLY, ASB1, CAB39, SERPINE2, PRKAG3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 UGT1A1, UGT1A3, KIF1A, FEV, INO80D, PID1, ATG16L1, PPP1R7, ANKZF1, USP40, HJURP, HES6, ASIC4, DOCK10, MREG, PECR, C2orf83, MFF, ACKR3, PSMD1, RNPEPL1, CYP20A1, PTH2R, PTMA, MARCH4, WDFY1, NYAP2, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, SNORD20, RPE, RPL37A, BCS1L, SNORA41, SAG, CCL20, TMBIM1, RAB17, RNF25, LOC643387, PRR21, LINC00607, LOC646736, PRSS56, COPS7B, RAPH1, NBEAL1, SLC4A3, MRPL44, AQP12B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SNORA75, LOC654841, SLC11A1, SP100, SPP2, SCARNA6, SCARNA5, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, TRPM8, ATG9A, MLPH, FAM134A, GLB1L, SPAG16, CHPF, IQCA1, CARF, NHEJ1, FAM124B, TM4SF20, C2orf54, TUBA4B, ARMC9, EFHD1, SPHKAP, WNT10A, SLC19A3, ILKAP, ITM2C, RHBDD1, CUL3, PLCD4, MGC16025, DGKD, STK16, KLF7, ADAM23, NRP2, PER2, CDK5R2, CNOT9, LRRFIP1, TMEM169, DNER, GPR55, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 B3GNT7, TRIP12, SP140L, CD28, ECEL1, EIF4E2, TTLL4, HDAC4, FARP2) 0.416288647077099 578 0.0821743087794591 0.835039229220284 28251 0.278904731521912 2 1 1 -7.84570298148968 LTS-040 NA NA NA NA LTS-040 chr2 242433288 243037218 603931 * c(BOK-AS1, STK25, NEU4, DTYMK, ATG4B, RTP5, THAP4, PDCD1, GAL3ST2, BOK, D2HGDH, LOC728323, ING5, FARP2) NA 0 NA 0.830997055686419 861 0.183353293560733 2 NA NA -5.80571984528767 LTS-040 chr3 239351 367757 128407 * CHL1 0.358 1 NA 0.954053383562398 13 0.107181669404849 3 3 0 -5.76926652241148 LTS-040 chr3 367758 4741696 4373939 * c(CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, IL5RA, ITPR1, TRNT1, CRBN, LRRN1, SETMAR) 0.292340677650149 32 0.0860534108337899 1.01777842743835 1147 0.254247463506327 3 3 0 -7.46971493015963 LTS-040 chr3 4741697 4744452 2756 * ITPR1 NA 0 NA 0.702 1 NA NA NA NA NA LTS-040 chr3 4744453 5212185 467733 * c(EGOT, BHLHE40-AS1, ITPR1, ARL8B, BHLHE40) 0.336082334720411 2 0.113137084989848 0.798542757903499 311 0.207170248981518 2 1 1 -7.09088367892349 LTS-040 chr3 5212186 5212191 6 * ARL8B NA 0 NA 1.087 1 NA NA NA NA NA LTS-040 chr3 5212192 10373656 5161465 * c(GHRLOS, LMCD1-AS1, SRGAP3-AS3, ARPC4-TTLL3, MIR4790, PRRT3-AS1, ARPC4, TADA3, FANCD2OS, IL17RE, CPNE9, CIDECP, FANCD2, THUMPD3, TTLL3, RPUSD3, PRRT3, GRM7, LINC00312, LMCD1, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, OXTR, SSUH2, GHRL, ARL8B, SETD5, EMC3, BRK1, RAD18, CIDEC, SEC13, MTMR14, VHL, BRPF1, CRELD1, JAGN1, LINC00852, IL17RC, CAMK1, CAV3, EDEM1, TATDN2, SRGAP3) 0.296231645635723 105 0.0670022524360326 1.0043683809079 3709 0.264515800828386 3 2 1 -7.78417715672869 LTS-040 chr3 10373657 15076281 4702625 * c(MIR885, MKRN2OS, FGD5P1, FGD5-AS1, SLC6A1-AS1, ATG7, CHCHD4, TAMM41, FGD5, FBLN2, CAND2, NUP210, MKRN2, LSM3, LINC00606, LINC00620, HRH1, TPRXL, ATP2B2, CCDC174, PPARG, TMEM40, RAF1, RPL32, SLC6A1, SLC6A6, SLC6A11, SYN2, TIMP4, NR2C2, WNT7A, XPC, TMEM43, HDAC11, TSEN2, GRIP2, C3orf20, VGLL4, IQSEC1) 0.296209223550329 68 0.0995103673661445 1.07827117287846 3494 0.29104065811932 4 3 1 -7.05919783623625 LTS-040 chr3 15076282 15079501 3220 * NR2C2 NA 0 NA 0.869 1 NA NA NA NA NA LTS-040 chr3 15079502 23631324 8551823 * c(MIR4270, MIR3714, SH3BP5-AS1, MIR4791, MIR548AC, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, DPH3, LOC339862, COL6A4P1, VENTXP7, RAB5A, SATB1, RBSN, MRPS25, BTD, MIR563, NR2C2, UBE2E2, ZNF385D, COLQ, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5) 0.30286636473238 63 0.068435916406357 1.00151299666467 2898 0.288248555921005 3 2 1 -7.63530668839916 LTS-040 chr3 23631325 23631437 113 * c(MIR548AC, UBE2E2) NA 0 NA 0.745 1 NA NA NA NA NA LTS-040 chr3 23631438 24163773 532336 * c(MIR548AC, LINC00691, NKIRAS1, RPL15, THRB, UBE2E1, UBE2E2, NR1D2) 0.330157862095429 6 0.0592542544182835 0.81117651998367 364 0.194450011502519 1 1 0 -7.54603551159512 LTS-040 chr3 24163774 24163921 148 * THRB 0.368 1 NA 0.810709056312078 5 0.176770472647442 2 2 0 -5.76441408375631 LTS-040 chr3 24163922 35723430 11559509 * c(PDCD6IP, MIR4792, MIR4442, OSBPL10-AS1, CRTAP, ARPP21, CMTM7, OSBPL10, LRRC3B, CCR4, TRIM71, ZCWPW2, CMC1, NEK10, CMTM8, STT3B, CLASP2, GPD1L, FBXL2, CNOT10, SUSD5, GLB1, RBMS3, LINC00692, GADL1, ZNF860, DYNC1LI1, CMTM6, OXSM, NGLY1, RARB, AZI2, TMPPE, THRB-AS1, LINC00693, TGFBR2, THRB, TOP2B, UBP1, EOMES, SLC4A7) 0.391677820217829 78 0.0834125670607034 0.761760940674638 3817 0.564982605628935 2 1 1 -6.84460057533859 LTS-040 chr3 35723431 35724313 883 * ARPP21 NA 0 NA 1.003 1 NA NA NA NA NA LTS-040 chr3 35724314 42788950 7064637 * c(ACVR2B-AS1, CCDC13-AS1, CTDSPL, EIF1B, ARPP21, SCN11A, CCR8, LYZL4, KLHL40, CTNNB1, CCDC13, CX3CR1, XIRP1, TTC21A, TRAK1, ZNF620, MYRIP, GOLGA4, ENTPD3-AS1, ZNF619, ZNF621, ACAA1, C3orf35, ITGA9, RPSA, MIR128-2, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, SS18L2, PLCD1, SLC25A38, ULK4, SNORA6, HHATL, WDR48, SNORA62, SCN5A, SCN10A, CSRNP1, GORASP1, STAC, VIPR1, DCLK3, CCK, RPL14, SEC22C, NA NA NA NA NA NA NA NA NA LTS-040 LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.402229482914707 125 0.0735133018465849 0.795270116778148 6158 0.218228482415779 2 1 1 -6.8228084312523 LTS-040 NA NA NA NA LTS-040 chr3 42788951 42791247 2297 * CCDC13 NA 0 NA 0.542 1 NA NA NA NA NA LTS-040 chr3 42791248 46713671 3922424 * c(LOC100132146, KRBOX1, SNRK-AS1, LARS2-AS1, ZNF197, CXCR6, CCR9, ZNF501, CCR1, CCR3, CCR5, ACKR2, TMEM42, CCDC13, CYP8B1, SACM1L, EXOSC7, LARS2, TMEM158, ALS2CL, HIGD1A, XCR1, TCAIM, ZNF660, ZNF445, TOPAZ1, ZNF662, LTF, MIR138-1, ABHD5, ZDHHC3, LZTFL1, SLC6A20, SNRK, ANO10, ZKSCAN7, KIF15, KIAA1143, LIMD1-AS1, CDCP1, MIR564, TDGF1, TGM4, CLEC3B, FAM198A, CCR2, ZNF35, LRRC2, FYCO1, RTP3, LRRC2-AS1, NA NA NA NA NA NA NA NA NA LTS-040 POMGNT2, LIMD1, CCRL2, ZNF502) 0.386503831048058 89 0.102766922437588 0.744885434752648 4530 0.223610002276487 2 1 1 -6.92242854687924 LTS-040 NA NA NA NA LTS-040 chr3 46713672 46714808 1137 * ALS2CL NA 0 NA 0.824 1 NA NA NA NA NA LTS-040 chr3 46714809 47059256 344448 * c(NRADDP, PRSS46, CCDC12, NBEAL2, ALS2CL, TMIE, SETD2, PRSS50, PRSS42, PRSS45, MYL3, PTH1R) 0.395797536500019 20 0.052854417731011 0.844668791766672 859 0.251113470231186 3 2 1 -6.8080071676816 LTS-040 chr3 47059257 47061215 1959 * SETD2 NA 0 NA 0.53 1 NA NA NA NA NA LTS-040 chr3 47061216 58572689 11511474 * c(SNORD19B, LINC00696, BSN-AS2, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, RPP14, FAM107A, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, ASB14, DAG1, DNASE1L3, DOCK3, DUSP7, NA NA NA NA NA NA NA NA NA LTS-040 CELSR3, KCTD6, KLHDC8B, DNAH12, PDE12, DENND6A, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, FLNB, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, PTPN23, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, RBM15B, GMPPB, APEH, HYAL1, CCDC36, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, ARF4, AMIGO3, RHOA, CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PDHB, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, PXK, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, ABHD6, LRTM1, SELENOK, QARS, RPL29, RNF123, SEMA3F, KIF9, SPINK8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, SLMAP, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, ACOX2, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.402163178656302 300 0.0862913898878958 0.77182443679535 18221 0.181861622176683 2 1 1 -6.80599939253498 LTS-040 NA NA NA NA LTS-040 chr3 58572690 58572713 24 * FAM107A NA 0 NA 0.814 1 NA NA NA NA NA LTS-040 chr3 58572714 67059743 8487030 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, FAM107A, SLC25A26, FAM3D, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, KBTBD8, CADPS, MAGI1, PSMD6) 0.39697249403507 41 0.0810239952413978 0.828454199968871 2423 0.208440670942705 2 1 1 -7.19071312471601 LTS-040 chr3 67059744 67411103 351360 * c(MIR4272, KBTBD8, SUCLG2) 0.354845774527222 2 0.0749533188057741 0.719701685812515 58 0.148332922095449 1 1 0 -7.21213973282749 LTS-040 chr3 67411104 67425963 14860 * SUCLG2 0.266 1 NA 0.776768389168158 18 0.381086973072751 2 2 0 -5.76441189994017 LTS-040 chr3 67425964 69915551 2489588 * c(MIR3136, ARL6IP5, FAM19A4, FRMD4B, EOGT, FAM19A1, MITF, LMOD3, TMF1, SUCLG2, UBA3) 0.335243612210155 16 0.148040929025276 0.735237724912231 921 0.214867438612059 2 2 0 -7.06310909607329 LTS-040 chr3 69915552 69928214 12663 * MITF NA 0 NA 0.942 1 NA NA NA NA NA LTS-040 chr3 69928215 75263592 5335378 * c(MIR1284, PPP4R2, LINC00870, PDZRN3, RYBP, FOXP1, GPR27, EIF4E3, MITF, CNTN3, EBLN2, SHQ1, PROK2, GXYLT2) 0.377718448550792 29 0.0865882476467902 0.804287911867293 1302 0.244359613046183 2 1 1 -6.95793801079389 LTS-040 chr3 75263593 75779688 516096 * c(ZNF717, MIR1324, FAM86DP) 0.327045510676044 48 0.067957273680595 1.38714624194454 119 0.865740149637409 4 3 1 -6.74548426469207 LTS-040 chr3 75779689 75779709 21 * ZNF717 0.316 1 NA 0.756 1 NA NA NA NA NA LTS-040 chr3 75779710 78719514 2939805 * c(ZNF717, ROBO1, ROBO2) 0.3249265852237 155 0.0963892250095788 0.923178845422026 616 0.337949176579552 3 2 1 -7.06378369802361 LTS-040 chr3 78719515 78734911 15397 * ROBO1 NA 0 NA 0.751 1 NA NA NA NA NA LTS-040 chr3 78734912 90264768 11529857 * c(MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, CGGBP1) 0.438191396248703 5 0.0561097139540026 0.784661163287106 1231 0.205218315619668 2 1 1 -6.76634869137281 LTS-040 chr3 90264769 90283666 18898 * character(0) NA 0 NA 1.0336718445844 7 0.291033789561739 3 NA NA -5.76478943405959 LTS-040 chr3 93591838 93593119 1282 * PROS1 0.282 1 NA 1.01343707970056 25 0.44891694480531 3 3 0 -5.76441440525165 LTS-040 chr3 93593120 111371086 17777967 * c(ZBTB11-AS1, MTHFD2P1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, ST3GAL6-AS1, CD96, TFG, ST3GAL6, HHLA2, FILIP1L, COL8A1, ZPLD1, CRYBG3, DCBLD2, FAM172BP, CPOX, LINC00635, DPPA2, LOC152225, ARL13B, DHFR2, GABRR3, ALCAM, MYH15, LINC00879, ABI3BP, NECTIN3, OR5K1, OR5H1, ZBTB11, MORC1, GPR15, LINC00636, EPHA6, PDCL3P4, DUBR, LNP1, FLJ22763, LINC01205, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, STX19, TRAT1, IMPG2, NA NA NA NA NA NA NA NA NA LTS-040 TRMT10C, TMEM45A, IFT57, DPPA4, TBC1D23, PROS1, CLDND1, NIT2, BBX, PCNP, SENP7, KIAA1524, RPL24, NSUN3, NFKBIZ, TMEM30CP, LINC00488, MIR548A3, OR5H6, OR5H2, ZBED2, CEP97, OR5AC2, ARL6, CMSS1, RETNLB, CCDC54, MINA, ADGRG7, CBLB, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.303902408305494 120 0.0828770135185137 1.01997338633883 6016 0.334114168455175 3 2 1 -7.49051288207469 LTS-040 NA NA NA NA LTS-040 chr3 111371087 111393539 22453 * c(CD96, PLCXD2) NA 0 NA 0.803 1 NA NA NA NA NA LTS-040 chr3 111393540 111677505 283966 * c(PLCXD2, PHLDB2) 0.297224842825013 5 0.0271808756297511 0.873611540206113 239 0.233664032313891 5 4 1 -7.47439816231712 LTS-040 chr3 111677506 111694858 17353 * PHLDB2 0.185 1 NA 0.878924271864837 61 0.217440987534801 3 3 0 -5.76702238888068 LTS-040 chr3 111694859 113955265 2260407 * c(MIR4446, CFAP44-AS1, CD200R1, CCDC80, BTLA, SPICE1, DRD3, USF3, ZDHHC23, GCSAM, NEPRO, SLC9C1, GTPBP8, TAGLN3, TMPRSS7, CD200R1L, CD200, ATP6V1A, GRAMD1C, SIDT1, SLC35A5, ABHD10, CFAP44, CCDC191, ATG3, MIR567, ZNF80, C3orf52, QTRT2, NAA50, PHLDB2, BOC) 0.19879598176672 56 0.0680319252788193 0.888090728141734 2970 0.295524651971783 3 3 0 -6.88178595893518 LTS-040 chr3 113955266 116164102 2208837 * c(ZBTB20-AS1, MIR4796, TIGIT, GAP43, ZBTB20, LSAMP, MIR568, ZNF80) NA 0 NA 0.866254323353452 300 0.224747945626974 2 NA NA -6.03393992308004 LTS-040 chr3 116164103 116363613 199511 * LSAMP 0.05 1 NA 0.729946965151474 17 0.517869341061782 2 2 0 -5.76644510158858 LTS-040 chr3 116363614 116569242 205629 * TUSC7 0.21 1 NA 0.49745770199584 22 0.090367982683981 1 1 0 -6.11385341741112 LTS-040 chr3 116569243 116728074 158832 * character(0) NA 0 NA 1.059 1 NA NA NA NA NA LTS-040 chr3 116728075 122599330 5871256 * c(IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.116275905876299 128 0.0430727273633756 1.43633046282292 4880 0.564782506289744 6 6 0 -6.83703999828012 LTS-040 chr3 122599331 141161766 18562436 * c(FAM86JP, LOC100129550, MIR548I1, MYLK-AS1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR4788, MIR5002, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, STAG1, ALDH1L1, PDIA5, TOPBP1, ADCY5, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, PISRT1, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, DZIP1L, ALG1L, HACD2, EPHB1, MRAS, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, ZBTB38, NA NA NA NA NA NA NA NA NA LTS-040 NUP210P1, COL6A5, ANAPC13, ARMC8, GATA2, SEC22A, NPHP3, ATP2C1, GP9, DNAJB8-AS1, TRIM42, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, KY, LOC339874, H1FX-AS1, NME9, CFAP100, NPHP3-AS1, NMNAT3, ITGB5, PRR23B, PRR23C, FOXL2NB, MCM2, MYLK, NCK1, PODXL2, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, ACKR4, RAB6B, PIK3CB, PLXNA1, IL20RB, SEMA5B, ROPN1, SLC41A3, ACPP, MSL2, FAIM, SLC25A36, PPP2R3A, CDV3, IFT122, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MUC13, HMCES, MRPS22, ISY1, HEG1, KIAA1257, SRPRB, RBP1, RBP2, RHO, BPESC1, EEFSEC, RPN1, RYK, CLSTN2, ALG1L2, TXNRD3NB, COL6A4P2, CCDC14, LOC653712, SLCO2A1, TMEM108, FOXL2, SNORA7B, SNORA58, TF, TRH, FAM86HP, PRR23A, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, CEP63, CEP70, ABTB1, SLC35G2, ESYT3, SOX14, ACAD11, BFSP2, CHCHD6, SLC12A8, DIRC2, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LOC90246, EFCAB12, SPSB4, PXYLP1, COPB2) 0.115771598029058 236 0.0404463865817769 1.49126005072569 13563 0.405945889407248 6 6 0 -6.95100787020695 LTS-040 NA NA NA NA LTS-040 chr3 141161767 195346861 54185095 * c(MIR944, DPPA2P3, WWTR1-AS1, LOC100128164, LINC00887, LOC100131635, SNAR-I, MIR1224, TIPARP-AS1, LOC100289361, MIR548H2, LINC00881, MIR3919, IQCJ-SCHIP1, LINC00578, LINC00888, TMEM44-AS1, LOC100507389, LOC100507391, ARHGEF26-AS1, LOC100507537, SMC4, ABCC5, MIR4789, MIR5186, MIR5692C1, NAALADL2-AS3, OPA1-AS1, HLTF-AS1, ABCC5-AS1, TPRG1-AS2, KCNAB1-AS2, KCNAB1-AS1, ADIPOQ-AS1, LINC01014, SLC9A9-AS1, LOC101243545, XXYLT1-AS2, NA NA NA NA NA NA NA NA NA LTS-040 ALG3, KCNMB2, IGF2BP2, CLDN16, PDCD10, RNF13, TM4SF18, RPL39L, MED12L, CLRN1-AS1, AP2M1, CLCN2, AADAC, DNAJC19, OTOL1, FAM131A, LRRC15, FAM43A, ERICH6, GRK7, TMEM207, RTP1, CP, CPA3, CPB1, CPN2, CRYGS, TTC14, PPM1L, WDR49, LRRC34, MB21D2, XXYLT1, PQLC2L, C3orf79, CCDC50, PYDC2, DGKG, SPTSSB, DHX36, HTR3C, AGTR1, DVL3, ECT2, EHHADH, AHSG, EIF4A2, EIF4G1, LIPH, HTR3D, RPL22L1, AADACP1, EPHB3, C3orf58, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ETV5, MECOM, FGF12, SLITRK3, NLGN1, PLCH1, TNIK, MCF2L2, ATP11B, U2SURP, VPS8, ACAP2, ZBTB38, LOC253573, NAALADL2, GK5, UTS2B, WWTR1, TIPARP, ARHGEF26, PCOLCE2, GHSR, GPR160, FETUB, LAMP3, KCNMB3, SERP1, GOLIM4, GP5, SLC9A9, HTR3E, IGSF10, C3orf33, C3orf70, TPRG1, TRIM59, GPR171, GYG1, SCHIP1, HRG, HES1, CCDC39, LINC00880, EHHADH-AS1, LPP-AS2, LRRIQ4, SAMD7, AADACL2, GPR149, PAQR9, NMRAL1P1, RTP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 OSTN, ATP13A5, APOD, SOX2-OT, IL1RAP, IL12A, KNG1, KPNA4, PLSCR5, ANKUB1, LEKR1, TMEM212, MBNL1-AS1, C3orf80, FLJ46066, FLJ42393, LINC00884, LPP, MIR15B, MIR16-2, TM4SF1, MBNL1, MLF1, MME, NDUFB5, ATP1B3, OPA1, CLDN11, P2RY1, NMD3, COMMD2, ZNF639, RSRC1, PEX5L, SELENOT, DNAJB11, PFN2, SERPINI1, SERPINI2, PIK3CA, PLD1, PLOD2, PLS1, PLSCR1, P2RY13, GPR87, DCUN1D1, POLR2H, XRN1, ATR, KLHL24, PPP1R2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TBCCD1, P3H2, ABCF3, LSG1, PARL, MFN1, YEATS2, PRKCI, MYNN, MASP1, EIF5A2, SUCNR1, MCCC1, LXN, CCNL1, PLSCR2, PSMD2, PLSCR4, HRASLS, MRPL47, NCEH1, IFT80, SLC7A14, PTX3, BCHE, RAP2B, RARRES1, RASA2, SENP2, GNB4, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, ZMAT3, TMEM14EP, LINC01330, IGF2BP2-AS1, LOC646903, PA2G4P4, LINC01192, GMNC, LOC647323, SHOX2, MFSD1, SI, FNDC3B, SIAH2, ST6GAL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 P2RY12, SKIL, SLC2A2, IQCJ, HLTF, SOX2, SSR3, SST, SCARNA7, SNORA81, SNORD66, MIR551B, MIR569, TERC, TFDP2, THPO, SEC62, TM4SF4, TRPC1, LINC00886, CLRN1, ZIC1, KCNAB1, ATP13A3, VEPH1, TBL1XR1, ZBBX, LRRC31, MAP6D1, PHC3, ARL14, FXR1, SPATA16, EIF2A, B3GNT5, ZIC4, ATP13A4, HPS3, ACTRT3, MGC2889, GFM1, ACTL6A, TP63, CHRD, B3GALNT1, TNFSF10, GMPS, EIF2B5, USP13, KLHL6, VWA5B2, TMEM41A, CLDN1, MAP3K13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SLC33A1, TMEM44, EGFEM1P, ADIPOQ, CAMK2N2, CHST2, RNF7, ECE2, TSC22D2, P2RY14) 0.121109275105765 492 0.0417428127586291 1.45046576380443 26276 0.4817329598771 5 5 0 -7.18403806266203 LTS-040 NA NA NA NA LTS-040 chr3 195346862 195398105 51244 * SDHAP2 0.366 1 NA 1.31438302015207 17 1.07063002685884 5 5 0 -5.76447073671864 LTS-040 chr3 195398106 195447963 49858 * c(MUC20, MIR570, SDHAP2) 0.466039770641016 2 0.0381837661840735 1.54952686862867 34 0.747499683138619 6 3 3 -7.33767961447142 LTS-040 chr3 195447964 195451097 3134 * MUC20 NA 0 NA 8.581 1 NA NA NA NA NA LTS-040 chr3 195451098 195473641 22544 * c(MUC20, MUC4) 0.310192217301784 13 0.198882132339993 2.84167474759201 82 2.51847021315397 14 10 4 -6.73307529223656 LTS-040 chr3 195473642 195473783 142 * MUC4 0.077 1 NA 5.85689023849292 7 11.9882366291374 20 20 0 -5.7644101854943 LTS-040 chr3 195473784 195476016 2233 * MUC4 0.200254590546297 2 0.268700576850888 2.58748235628301 15 0.574457242803608 13 11 2 -6.73313200627199 LTS-040 chr3 195476017 195477781 1765 * MUC4 NA 0 NA 1.46 1 NA NA NA NA NA LTS-040 chr3 195477782 197544101 2066320 * c(MIR922, MFI2-AS1, DLG1-AS1, TM4SF19-TCTEX1D2, MIR4797, TNK2, TM4SF19, ZDHHC19, NCBP2-AS2, RNF168, DLG1, SLC51A, FBXO45, SENP5, LOC220729, NCBP2, TCTEX1D2, SMCO1, SDHAP1, UBXN7, WDR53, NRROS, LINC00885, MELTF, MUC4, PAK2, PCYT1A, PIGX, BDH1, TFRC, PIGZ, FYTTD1, LRCH3, CEP19, RUBCN) 0.137429150599551 80 0.0606682708034314 1.37656281704835 2783 0.39094077424376 5 5 0 -6.73340660261018 LTS-040 chr3 197544102 197770512 226411 * c(RPL35A, IQCG, LRCH3, LMLN) NA 0 NA 1.39897568412566 421 0.305897286655233 5 NA NA -5.7647298437173 LTS-040 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.329 1 NA 0.759479512954902 13 0.12225829110367 2 2 0 -5.76463342334296 LTS-040 chr4 60336 3372141 3311806 * c(MIR943, LOC100129917, LOC100130872, TMED11P, MIR4800, HTT-AS, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, CTBP1, ZNF595, FAM53A, DGKQ, ZNF721, FGFR3, ZNF718, GAK, CRIPAK, RNF212, GRK4, HTT, NOP14-AS1, NAT8L, IDUA, MSANTD1, POLN, LETM1, C4orf48, CFAP99, MYL5, PDE6B, ATP5I, FGFRL1, PIGG, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, NA NA NA NA NA NA NA NA NA LTS-040 TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.197631127000728 106 0.063116148156642 0.893912584384097 5500 0.236769407456556 3 3 0 -7.01996007801491 LTS-040 NA NA NA NA LTS-040 chr4 3372142 3415905 43764 * RGS12 0.217 1 NA 1.17499856568742 11 0.428681466825894 4 4 0 -5.76441197832899 LTS-040 chr4 3415906 3589560 173655 * c(DOK7, LINC00955, HGFAC, LRPAP1, RGS12) 0.457 1 NA 1.00382906468522 413 0.23996807190341 3 3 0 -5.76544667570649 LTS-040 chr4 3589561 4239539 649979 * c(LOC100133461, OTOP1, ADRA2C, LINC00955, FAM86EP, TMEM128) 0.367941943150024 22 0.0632304929452178 1.03655255064957 136 0.476889195223269 3 2 1 -6.82286510202875 LTS-040 chr4 4239540 4275287 35748 * c(LYAR, TMEM128) 0.261 1 NA 0.915168861152271 45 0.359840445843219 3 3 0 -5.76518798617024 LTS-040 chr4 4275288 24896758 20621471 * c(LOC100129931, USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR4274, MIR3138, SLIT2-IT1, LOC100505912, STX18-AS1, MIR378D1, MIR4798, MIR5091, MIR548AX, LINC01587, PPARGC1A, C1QTNF7, MRFAP1L1, CLNK, CPEB2, EVC2, PACRGL, CRMP1, LINC01085, JAKMIP1, TRMT44, DHX15, ADGRA3, ZBTB49, DRD5, TAPT1, TAPT1-AS1, EVC, MAN2B2, LCORL, CCDC96, BOD1L1, FBXL5, NSG1, FAM184B, GPR78, NA NA NA NA NA NA NA NA NA LTS-040 LOC285484, LINC01097, LINC01096, FAM200B, HMX1, KCNIP4-IT1, USP17L6P, USP17L9P, MIR218-1, CPEB2-AS1, MSX1, LAP3, STX18, CYTL1, SH3TC1, DCAF16, PPP2R2C, BLOC1S4, STK32B, LYAR, SLC2A9, TBC1D14, SORCS2, CC2D2A, GBA3, NKX3-2, QDPR, AFAP1, S100P, NCAPG, DEFB131, CLRN2, LOC650293, SOD3, BST1, MIR572, MIR573, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, FLJ36777, WFS1, PSAPL1, GRPEL1, MED28, KCNIP4, ACOX3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FGFBP2, ABLIM2, AFAP1-AS1, CPZ, ZNF518B, PROM1, LDB2, CCDC149, SLIT2, MRFAP1, LOC93622, TADA2B, RAB28, HTRA3, CD38, KIAA0232, WDR1, HS3ST1, FGFBP1) 0.197240929239502 259 0.049550792578573 0.931642677801218 7986 0.378925362505658 3 3 0 -6.94755369281363 LTS-040 NA NA NA NA LTS-040 chr4 24896759 24914428 17670 * CCDC149 NA 0 NA 0.512 1 NA NA NA NA NA LTS-040 chr4 24914429 49063872 24149444 * c(MIR4275, MIR4802, MIR4801, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, SLC34A2, CORIN, PTTG2, LIAS, ARAP2, CNGA1, OCIAD2, GNPDA2, NFXL1, NIPAL1, SHISA3, KLB, COX7B2, SLC10A4, SMIM14, LIMCH1, TBC1D1, SEL1L3, PDS5A, GABRA2, GABRA4, GABRB1, GABRG1, DCAF4L1, YIPF7, FRYL, SEPSECS-AS1, ZCCHC4, ANAPC4, UBE2K, APBB2, ZAR1, LOC344967, RBPJ, KCTD8, SMIM20, BEND4, GRXCR1, RHOH, DTHD1, LOC401127, PCDH7, KLHL5, NA NA NA NA NA NA NA NA NA LTS-040 SEPSECS, KLF3, RBM47, OCIAD1, COMMD8, TMEM33, LGI2, PGM2, C4orf19, TBC1D19, PI4K2B, CHRNA9, N4BP2, ATP10D, NWD2, SLAIN2, STIM2, WDR19, RFC1, GUF1, RPL9, MIR574, TEC, TLR1, TXK, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, CWH43, TLR10, CCKAR, PHOX2B, CCDC149, FAM114A1) 0.208748417184493 182 0.0671929541307401 0.89984801405476 9108 0.353722799746912 3 3 0 -7.50124712707454 LTS-040 NA NA NA NA LTS-040 chr4 49063873 49064107 235 * CWH43 NA 0 NA 0.792136155007776 7 0.0978940146037443 2 NA NA -5.76441310072047 LTS-040 chr4 52709193 52714511 5319 * DCUN1D4 0.154 1 NA 0.805691776509438 17 0.215379043439563 2 2 0 -5.76447707724588 LTS-040 chr4 52714512 68906584 16192073 * c(EPHA5-AS1, ERVMER34-1, SRD5A3-AS1, THEGL, MIR4449, LNX1-AS1, LNX1-AS2, CENPC, PAICS, NMU, SPATA18, ARL9, AASDH, PDCL2, LINC01618, SCFD2, GSX2, EPHA5, DCUN1D4, ADGRL3, TECRL, IGFBP7-AS1, STAP1, CHIC2, GNRHR, TMPRSS11A, LRRC66, IGFBP7, KDR, KIT, LOC401134, RPL21P44, PDGFRA, POLR2B, PPAT, UBA6-AS1, UBA6, EXOC1, TMEM165, DANCR, KIAA1211, REST, LOC644145, SGCB, TMPRSS11GP, USP46, RASL11B, SPINK2, SRP72, NA NA NA NA NA NA NA NA NA LTS-040 SNORA26, SRD5A3, FIP1L1, NOA1, HOPX, LNX1, TMPRSS11D, CLOCK, CEP135) 0.193438400217628 73 0.0655344524633047 0.919856369854141 4561 0.291106781789467 3 3 0 -7.1624924596419 LTS-040 NA NA NA NA LTS-040 chr4 68906585 68907560 976 * UBA6-AS1 NA 0 NA 0.325264297560275 40 0.257134653689862 0 NA NA -5.76464381041236 LTS-040 chr4 68907561 69363297 455737 * c(FTLP10, TMPRSS11B, TMPRSS11F, SYT14P1, TMPRSS11BNL, UBA6-AS1, LOC550113) 0.161284079600791 9 0.115996767196332 0.943278191811776 398 0.279518794147025 3 3 0 -6.78940493578585 LTS-040 chr4 69363298 69402958 39661 * UGT2B17 NA 0 NA 1.795 1 NA NA NA NA NA LTS-040 chr4 69402959 69512430 109472 * UGT2B17 NA 0 NA 1.70509976844732 43 0.370333536177482 7 NA NA -5.76521925276874 LTS-040 chr4 69512431 69512573 143 * character(0) NA 0 NA 1.016 1 NA NA NA NA NA LTS-040 chr4 69512574 90168039 20655466 * c(FAM47E, CSN1S2BP, THAP9-AS1, LINC01094, LINC01088, LINC00989, LOC100506746, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, PYURF, ENAM, FAM13A, CDS1, CXCL13, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, PCAT4, ANTXR2, LIN54, C4orf36, CSN1S1, CSN2, CSN3, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, AFM, AFP, DMP1, DSPP, EREG, ALB, FGF5, SEC31A, RUFY3, WDFY3, CNOT6L, C4orf22, NA NA NA NA NA NA NA NA NA LTS-040 EPGN, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, GC, NAP1L5, SMR3A, GK2, NAAA, COQ2, SULT1B1, FAM13A-AS1, GPRIN3, COX18, CSN1S2AP, CXCL1, CXCL2, CXCL3, GRSF1, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, CXCL10, AREG, PRR27, AMTN, WDFY3-AS2, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MUC7, NKX6-1, MRPS18C, COPS4, HSD17B11, HERC5, PLAC8, PF4, PF4V1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, ODAM, HERC6, SDAD1, BMP2K, SEPT11, PRKG2, MAPK10, MEPE, PRDM8, UTP3, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, CXCL6, CXCL11, CXCL5, MRPL1, BMP3, SPP1, STATH, SULT1E1, BTC, MIR575, LOC728040, UGT2B4, UGT2B7, THAP9, SCD5, FRAS1, ARHGAP24, SPARCL1, FAM175A, NAA11, GPAT3, CABS1, USO1, SLC4A4, HERC3, STBD1, CDKL2, CCNG2, MOB1B, ABCG2, SCARB2, ADAMTS3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 G3BP2, HNRNPDL) 0.203522648355062 221 0.0634585150670306 0.908559307479318 12807 0.279288836659486 3 3 0 -7.53963261610328 LTS-040 NA NA NA NA LTS-040 chr4 90168040 98109018 7940979 * c(PDLIM5, MMRN1, HPGDS, GPRIN3, GRID2, CCSER1, ATOH1, PDHA2, SMARCAD1, SNCA-AS1, BMPR1B, SNCA, UNC5C) 0.19790438670845 43 0.0627252353483162 0.9883302207058 1600 0.378843942530403 3 3 0 -6.73636777793256 LTS-040 chr4 98109019 98480010 370992 * STPG2-AS1 NA 0 NA 0.867 1 NA NA NA NA NA LTS-040 chr4 98480011 190981476 92501466 * c(SNHG8, SCOC-AS1, CLDN24, PP12613, MIR1243, MIR2054, MIR1305, MIR1973, MIR3140, MIR4276, MIR3945, MIR3684, MIR3688-1, LINC01095, LINC01207, APELA, LOC100506085, LOC100506122, LINC01093, LOC100507053, GIMD1, SEC24B-AS1, MIR4799, MIR3688-2, LINC00499, LINC01216, ARHGEF38-IT1, TSPAN5, SPRY1, ANAPC10, PGRMC2, SEC24B, CLGN, MAB21L2, CENPE, RRH, PLK4, ADAM29, PRDM5, LSM6, NUDT6, ANXA10, KLHL2, SCRG1, CYP2U1, DDIT4L, NA NA NA NA NA NA NA NA NA LTS-040 WDR17, CLCN3, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, SCLT1, C4orf33, TMEM155, PABPC4L, ADAD1, ZFP42, C4orf32, SPATA4, TRAM1L1, ENPP6, SLC9B2, CPE, ASB5, SLC9B1, CTSO, ZNF827, SH3D19, MGAT4D, WWC2-AS2, FAM218A, C4orf45, DCTD, SPATA5, BBS12, DCLK2, TRIM60, FREM3, MMAA, RBM46, SGMS2, SYNPO2, AGA, EDNRA, EGF, EIF4E, ELF2, C4orf46, TIGD4, TMEM154, TMEM192, RWDD4, PRIMPOL, ENPEP, TRIML2, ETFDH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 F11, FABP2, ACSL1, FAT1, FGA, FGB, FGF2, FGG, HSPA4L, PALLD, TBC1D9, METAP1, KIAA0922, TRIM2, ANP32C, SLC7A11, FRG1, GAB1, ELMOD2, NPNT, CCDC110, MFSD8, LOC256880, NOCT, FAM149A, FBXO8, PPA2, DAPP1, DKK2, GK3P, INTU, ARFIP1, PDLIM3, ZNF330, GLRB, GPM6A, LINC01091, CYP4V2, F11-AS1, RPL34-AS1, LINC01098, RNF175, STPG2, ANK2, GRIA2, SLC25A4, GUCY1A3, GUCY1B3, GYPA, GYPB, GYPE, H2AFZ, ANXA2P1, HADH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ANXA5, HMGB2, HPGD, LOC339975, TRIML1, LOC340017, CFI, PRSS48, LRIT3, ANKRD37, IL2, PCNAP1, IL15, ING2, IRF2, KLKB1, LOC389247, TRIM61, HELT, LINC01061, C4orf3, LINC01060, FAM92A1P2, MAD2L1, SMAD1, MANBA, MGST2, NR3C2, GUSBP5, C4orf47, GALNTL6, MIR302B, MTNR1A, MTTP, NDUFC1, NEK1, NFKB1, NPY1R, NPY2R, NPY5R, CISD2, SPOCK3, AADAT, LEF1, FAM198B, LARP7, EMCN, MYOZ2, ASIC5, GALNT7, GATB, PITX2, PLRG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CLDN22, EXOSC9, GAR1, PCDH18, USP53, DKFZP434I0714, POU4F2, OTUD4, TET2, DCHS2, PPID, ARHGEF38, HPF1, MCUB, MARCH1, BANK1, LARP1B, BBS7, NEIL3, FBXW7, PPP3CA, TMEM144, TMA16, UFSP2, ZGRF1, AP1AR, MAML3, DDX60, CDKN2AIP, TENM3, TMEM184C, LRP2BP, PDGFC, FSTL5, BDH2, STOX2, INTS12, ANKRD50, RNF150, PCDH10, CFAP97, FNIP2, SH3RF1, METTL14, OSTC, IL21, RAP1GDS1, RXFP1, SPCS3, ABCE1, SCOC, TRAPPC11, RPL34, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RPS3A, MSMO1, NEUROG2, SLC39A8, SLC7A11-AS1, LINC00616, LEF1-AS1, SFRP2, SLED1, HHIP, TNRC18P1, CEP170P1, LOC645513, NDST4, HHIP-AS1, C4orf51, ETNPPL, FLJ38576, SNORA24, TACR3, MIR577, MIR578, TDO2, TLL1, TLR2, TLR3, TRPC3, LINC00290, LOC728175, CETN4P, FAM160A1, MIR3945HG, UBE2D3, UCP1, UGT8, VEGFC, ELOVL6, NDNF, FAT4, ARSJ, ARHGAP10, CENPU, HAND2-AS1, GSTCD, MAP9, TNIP3, JADE1, DNAJB14, GLRA3, WWC2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NAA15, ABHD18, ALPK1, CXXC4, CEP44, SETD7, PLA2G12A, CAMK2D, SLC25A31, RAB33B, CASP3, SNX25, TTC29, CASP6, MND1, SLC10A7, TKTL2, C4orf17, QRFPR, KIAA1109, COL25A1, USP38, SMARCA5, SORBS2, MGARP, CBR4, PRSS12, FHDC1, LAMTOR3, PDE5A, SAP30, INPP4B, CCNA2, SNORD73A, FLJ20021, PAPSS1, LOC90768, PRMT9, DDX60L, LRAT, NAF1, AIMP1, TIFA, NDST3, TRMT10A, TBCK, HAND2, RAPGEF2, MFAP3L, LRBA, SEC24D) 0.212201550281326 575 0.0631740728326176 0.920854044038468 32292 0.573950355578465 3 3 0 -7.36775021287182 LTS-040 NA NA NA NA LTS-040 chr4 190981477 190981567 91 * character(0) NA 0 NA 1.032 1 NA NA NA NA NA LTS-040 chr5 140347 171569 31223 * PLEKHG4B 0.427 1 NA 1.01931175163645 97 0.189954136262313 3 3 0 -5.76520955346159 LTS-040 chr5 171570 892955 721386 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3, BRD9, ZDHHC11) 0.370388478198869 108 0.0832213369942951 1.06245499304595 1306 0.400711476341558 3 2 1 -6.79011059635465 LTS-040 chr5 892956 893695 740 * TRIP13 0.481 1 NA 0.99479737364374 11 0.176505111952755 3 3 0 -5.76441329391752 LTS-040 chr5 893696 32098722 31205027 * c(SNORD123, LOC100130744, CDH6, MIR4279, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, CDH9, CDH10, CDH12, CDH18, MARCH6, BASP1, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, PDZD2, FBXL7, ICE1, LINC01018, LINC01019, LOC285692, LOC285696, DROSHA, SLC6A19, LINC01020, LOC340107, NA NA NA NA NA NA NA NA NA LTS-040 SLC6A18, FLJ33360, LOC401177, LINC01194, MARCH11, LOC442132, MTRR, MYO10, NDUFS6, IRX4, TAS2R1, PMCHL1, FAM134B, FAM105A, NSUN2, C5orf22, ANKH, PRDM9, LINC01021, MRPL36, ANKRD33B, SLC6A3, SRD5A1, TERT, TRIO, GUSBP1, SDHAP3, LOC728613, LOC729506, LSP1P3, FASTKD3, IRX1, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, ZNF622, TRIP13) 0.432404144455089 187 0.0521014665805997 1.08848319983437 6871 0.269415759271156 4 2 2 -8.06025047518672 LTS-040 NA NA NA NA LTS-040 chr5 32098723 32101023 2301 * PDZD2 NA 0 NA 1.422 1 NA NA NA NA NA LTS-040 chr5 32101024 32143988 42965 * c(PDZD2, GOLPH3) NA 0 NA 1.43304520025309 115 0.246361803792021 5 NA NA -5.76505281973334 LTS-040 chr5 32143989 32173896 29908 * GOLPH3 NA 0 NA 0.779 1 NA NA NA NA NA LTS-040 chr5 32173897 36686886 4512990 * c(SUB1, C1QTNF3, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, AMACR, RAI14, LOC340113, IL7R, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, BRIX1, PRLR, RAD1, GOLPH3, AGXT2, SKP2, SLC1A3, TARS, MIR580, SPEF2, ADAMTS12, LMBRD2) 0.421935319970442 61 0.105235920232133 1.05560789104605 3423 0.302864180588196 3 2 1 -6.94013548516814 LTS-040 chr5 36686887 37001084 314198 * c(NIPBL, NIPBL-AS1, SLC1A3) 0 1 NA 1.07435678292656 133 0.329697971384999 3 3 0 -5.77900168227969 LTS-040 chr5 37001085 38408093 1407009 * c(EGFLAM-AS2, EGFLAM-AS4, GDNF-AS1, EGFLAM, NIPBL, GDNF, WDR70, C5orf42, NUP155) 0.239712409163965 9 0.227210805200809 1.04490047050096 970 0.341136376689711 3 3 0 -6.7854361291107 LTS-040 chr5 38408094 38412674 4581 * EGFLAM 0.421 1 NA 1.02569961617345 11 0.208125137182592 3 3 0 -5.76454141198958 LTS-040 chr5 38412675 44809162 6396488 * c(CCDC152, LOC100132356, MIR3650, LOC100506548, LOC100506639, NNT-AS1, PAIP1, MRPS30, MROH2B, EGFLAM, LOC153684, DAB2, NIM1K, FGF10, NNT, TTC33, RICTOR, FYB, FBXO4, GHR, C5orf51, HMGCS1, PLCXD3, C5orf34, ANXA2R, LIFR, OXCT1, PRKAA1, CCL28, PTGER4, RPL37, SNORD72, SELENOP, TMEM267, LOC648987, C6, C7, C9, ZNF131, CARD6, OSMR) 0.38740063946259 56 0.151774541223607 1.0218372209267 3587 0.437832667875178 3 2 1 -6.76818305307265 LTS-040 chr5 44809163 45696278 887116 * c(MRPS30, HCN1) NA 0 NA 1.14894352906092 151 0.285823882543481 4 NA NA -5.7688167182862 LTS-040 chr5 49692017 49698180 6164 * EMB 0.229 1 NA 0.742360570198018 67 0.270657748670573 2 2 0 -5.76453972951149 LTS-040 chr5 49698181 68862424 19164244 * c(LRRC70, FAM159B, LOC100303749, MIR449C, OCLN, MIR5687, IPO11-LRRC70, CDK7, CWC27, CCNO, FST, PLK2, ESM1, ADAMTS6, SNX18, RAB3C, ERCC8, SETD9, IL31RA, EMB, SREK1, SLC38A9, MARVELD2, MIER3, CDC20B, CCDC125, GAPT, PPWD1, SKIV2L2, LOC257396, PART1, DIMT1, C5orf64, RNF180, SREK1IP1, GZMA, GZMK, HTR1A, MCIDAS, ACTBL2, IL6ST, ISL1, ITGA1, ITGA2, TRIM23, MAST4, RNF138P1, KIF2A, RGS7BP, CD180, MAP3K1, MOCS2, NA NA NA NA NA NA NA NA NA LTS-040 FLJ31104, NDUFS4, GPX8, IPO11, PDE4D, PIK3R1, PELO, DHX29, DDX4, SGTB, ARL15, MIR449A, DEPDC1B, ERBIN, NLN, ZSWIM6, RAD17, CENPK, LOC642366, SMIM15, SLC30A5, CENPH, GPBP1, TAF9, MIR449B, MIR581, GTF2H2C, PARP8, ANKRD55, ELOVL7, TRAPPC13, PLPP1, CCNB1, HSPB3, NDUFAF2, MRPS36) 0.246484615319074 161 0.0641858066826546 0.755256843275061 8243 0.254703131020067 2 2 0 -6.92531685023735 LTS-040 NA NA NA NA LTS-040 chr5 68862425 70378792 1516368 * c(GUSBP9, NA, SMA4, SMA5, GTF2H2, LOC441081, NAIP, LOC647859, GUSBP3, GTF2H2B, SMN1, SMN2, GTF2H2C, SERF1A) 0.185629622346402 2 0.089095454429505 0.363976895252407 123 0.208727782574448 0 0 0 -9.47690765014492 LTS-040 chr5 70378793 70388840 10048 * c(GUSBP9, NAIP, LOC647859) NA 0 NA 0.862 1 NA NA NA NA NA LTS-040 chr5 70388841 93855502 23466662 * c(GUSBP9, ARRDC3-AS1, CKMT2-AS1, NCRUPAR, MIR2277, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR4804, MIR3977, MIR4803, EDIL3, COL4A3BP, LHFPL2, NSA2, POLR3G, CETN3, IQGAP2, FCHO2, CKMT2, LYSMD3, JMY, POU5F2, TMEM171, TMEM174, POC5, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, ZNF366, FAM151B, S100Z, DHFR, CMYA5, F2R, F2RL1, F2RL2, SV2C, MRPS27, OTP, SSBP2, BHMT2, NA NA NA NA NA NA NA NA NA LTS-040 ANKRD31, SERINC5, FAM169A, RNU5E-1, KIAA0825, NBPF22P, DMGDH, HEXB, HMGCR, ANKRD34B, MTX3, TNPO1, MIR9-2, ARSB, MAP1B, MEF2C, CRSP8P, NR2F1-AS1, MSH3, NAIP, GCNT4, POLK, PMCHL2, AGGF1, WDR41, BDP1, ARRDC3, ANKRA2, RASA1, RASGRF2, RPS23, BHMT, MCCC2, ARHGEF28, LOC644936, LINC00461, LOC647859, SCARNA18, SNORA47, BTF3, TBCA, NR2F1, THBS4, ZBED3-AS1, ANKDD1B, XRCC4, PTCD2, ATG10, FAM172A, ADGRV1, UTP15, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZCCHC9, ZBED3, GFM2, SPZ1, ENC1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, CARTPT, ZFYVE16) 0.233300864114229 177 0.0601674991441511 0.785665272320896 10199 0.41529739639113 2 2 0 -6.75894380359145 LTS-040 NA NA NA NA LTS-040 chr5 93855503 96367779 2512277 * c(ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, PCSK1, ERAP1, ERAP2, MIR583, MCTP1, CAST, SPATA9, SLF1, TTC37) 0.246200056024296 44 0.0685647600546598 0.725413091171401 2194 0.192615239356638 2 2 0 -6.94648548885369 LTS-040 chr5 96367780 96371242 3463 * character(0) NA 0 NA 1.0569965505693 70 0.265534744658996 3 NA NA -5.76457826731838 LTS-040 chr5 96371243 96519364 148122 * c(LIX1, RIOK2) 0.293834250757222 2 0.0820243866176395 0.740597164739586 279 0.221505411391523 1 1 0 -6.940932689443 LTS-040 chr5 97912972 99871678 1958707 * c(LOC100133050, LOC100289230, CHD1, RGMB, FAM174A, RGMB-AS1) 0.0901760834288043 3 0.0787802851818482 1.06352836352892 306 0.368598742277174 4 4 0 -7.28957436979024 LTS-040 chr5 99871679 99897771 26093 * FAM174A NA 0 NA 0.798 1 NA NA NA NA NA LTS-040 chr5 99897772 118878053 18980282 * c(LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, APC, HSD17B4, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, PAM, TMED7, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, FEM1C, SEMA6A, EPB41L4A, TMEM232, ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NA NA NA NA NA NA NA NA NA LTS-040 NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.237844632050727 175 0.0689230822320637 0.785307634583482 6080 0.248597905523556 2 2 0 -6.74536799509622 LTS-040 NA NA NA NA LTS-040 chr5 118878054 118965211 87158 * character(0) NA 0 NA 0.968 1 NA NA NA NA NA LTS-040 chr5 118965212 128369276 9404065 * c(LOC100505841, MARCH3, PRRC1, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, FBN2, SLC27A6, SNX24, FAM170A, TEX43, LMNB1, C5orf63, LOX, ALDH7A1, PRR16, PHAX, PPIC, ZNF608, CTXN3, LINC01184, SLC12A2, GRAMD3, SNX2, MEGF10, PRDM6, FTMT, SNCAIP) 0.240806202357804 47 0.0665227663727497 0.835659328972167 2964 0.281012794983813 2 2 0 -7.04647458094441 LTS-040 chr5 128369277 128430291 61015 * SLC27A6 NA 0 NA 0.516 1 NA NA NA NA NA LTS-040 chr5 128430292 140857465 12427174 * c(SRA1, VTRNA2-1, MIR874, KIAA1024L, MIR1289-2, MIR3936, MIR3661, LINC01024, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, KIF20A, APBB3, SEC24A, BRD8, HNRNPA0, KIF3A, SLC35A4, LEAP2, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, CTNNA1, SLC25A48, ZMAT2, ADAMTS19, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, FSTL4, SEPT8, ACSL6, JADE2, HARS2, PCDHGA12, LRRTM2, PCDHB5, FBXL21, KLHL3, GDF9, GFRA3, SNORD63, SNORA74A, PKD2L2, NA NA NA NA NA NA NA NA NA LTS-040 UQCRQ, AFF4, PCDHB1, HARS, HINT1, HSPA4, HSPA9, CHSY3, TMEM173, C5orf66-AS2, LOC340074, CATSPER3, IK, IL3, IL4, IL5, IL9, IL13, IRF1, DND1, LOC389332, PROB1, LECT2, ANKHD1-EIF4EBP3, SMAD5, C5orf56, NDUFA2, NEUROG1, NPY6R, IGIP, TIFAB, PCDHGC3, ISOC1, SAR1B, MZB1, PAIP2, CDKL3, FAM13B, FAM53C, REEP2, CXXC5, RAPGEF6, KDM3B, PFDN1, PITX1, PCDHB18P, PCDHB17P, ZCCHC10, WDR55, ANKHD1, PPP2CA, LOC553103, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TMCO6, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 C5orf15, CDC42SE2, TRPC7, PCDHB16, PURA, ECSCR, SIL1, CCNI2, SKP1, SLC22A4, SLC22A5, SPOCK1, TAF7, TCF7, TGFBI, SNHG4, MEIKIN, UBE2B, UBE2D2, VDAC1, WNT8A, TXNDC15, CAMLG, SLC4A9, NME5, SLC25A2, PCDHB19P, PCBD2, PSD2, CYSTM1, PDLIM4, EIF4EBP3, PCDHGB4, CDC23, P4HA2, LYRM7, CDKN2AIPNL, CD14, MYOT, NRG2, CXCL14, H2AFY, SMAD5-AS1, FNIP1, PCDHGA8, PCDHA9, MATR3, DDX46, CDC25C, SLC23A1) 0.243453210347667 119 0.0625070820656398 0.770529902936119 12876 0.204862291351063 2 2 0 -6.76529802713766 LTS-040 NA NA NA NA LTS-040 chr5 140857466 141488336 630871 * c(GNPDA1, LOC100505658, DIAPH1, PCDHGA12, RELL2, PCDH1, PCDHGC3, PCDH12, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, ARAP3, LOC729080, NDFIP1, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141) 0.180049599722472 15 0.0920042442085198 0.846048618946662 1405 2.8168317969398 3 3 0 -6.75056871939887 LTS-040 chr5 141488337 143855653 2367317 * c(MIR5197, ARHGAP26-AS1, FGF1, ARHGAP26, NR3C1, KCTD16, HMHB1, NDFIP1, YIPF5, SPRY4) 0.242937464611309 14 0.0473172598205251 0.744729319500961 848 0.170676843361118 2 2 0 -6.84224424344091 LTS-040 chr5 143855654 143855915 262 * KCTD16 0.287 1 NA 0.837905049095041 7 0.0962301309114671 2 2 0 -5.76449394748508 LTS-040 chr5 143855916 143856969 1054 * KCTD16 0.297 1 NA 0.759422968802484 27 0.162260790404103 2 2 0 -5.76442887522637 LTS-040 chr5 145144392 150036600 4892209 * c(PPP2R2B-IT1, CDX1, TCERG1, SPINK5, SYNPO, SCGB3A2, PPARGC1B, AFAP1L1, GRPEL2, GPR151, CSF1R, CSNK1A1, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DPYSL3, SLC26A2, STK32A, ABLIM3, HMGXB3, IL17B, NDST1, HTR4, ARSI, C5orf46, ARHGEF37, SPINK6, MIR143, SPINK14, PDE6A, LARS, PDGFRB, RBM27, POU4F3, PPP2R2B, RPS14, GRXCR2, SPINK9, SLC6A7, SPINK1, TCOF1, CARMN, PCYOX1L, SH3TC2, CAMK2A, FBXO38, TIGD6, NA NA NA NA NA NA NA NA NA LTS-040 SPINK7, CD74, JAKMIP2) 0.329099237920326 115 0.0793748966497222 0.952949052781875 5273 0.250086187795698 3 2 1 -7.12297050512374 LTS-040 NA NA NA NA LTS-040 chr5 150036601 175386658 25350058 * c(FAM196B, C5orf52, LOC100268168, MIR103B1, MIR3142, MIR3141, MIR3912, MIR4634, MIR378E, LOC100652758, G3BP1, TNIP1, SLU7, CPLX2, FAXDC2, FAM114A2, SOX30, SYNPO, PWWP2A, C1QTNF2, C5orf47, C5orf58, LSM11, ZNF300P1, NUDCD2, UBLCP1, ADRA1B, NKX2-5, SLC36A2, CREBRF, PPP1R2P3, FAM71B, RNF145, DOCK2, DRD1, DUSP1, EBF1, SLC36A1, FABP6, FAT2, FOXI1, ATP10B, WWC1, FBXW11, LARP1, GABRA1, GABRA6, GABRB2, GABRG2, NA NA NA NA NA NA NA NA NA LTS-040 GABRP, LINC01366, GEMIN5, CCDC69, HAVCR1, CYFIP2, GLRA1, MAT2B, GM2A, EFCAB9, SH3PXD2B, LOC285593, LOC285626, LOC285627, LOC285629, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, TLX3, KCNIP1, ANXA6, HMMR, HRH2, IRGM, FBLL1, NIPAL4, IL12B, ITK, KCNMB1, SAP30L-AS1, LCP2, MIR103A1, MIR146A, MIR218-2, FNDC9, MFAP3, FLJ16171, MSX2, ATOX1, NPM1, RPL26L1, DCTN4, HMP19, NEURL1B, SPDL1, THG1L, GALNT10, RBM22, NMUR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ERGIC1, TENM2, RARS, ZBED8, SGCD, RANBP17, SLIT3, BNIP1, SPARC, SNORA74B, STK10, MIR585, TTC1, CCNJL, PANK3, SAP30L, CPEB4, THOC3, HAVCR2, SMIM3, STC2, ADAM19, FGF18, ATP6V0E1, CCNG1, BOD1, TIMD4, ZNF300, MYOZ3, UBTD2, PTTG1, CNOT8, SFXN1, HAND1, MED7, CLINT1) 0.347384762535997 253 0.0729250186660905 0.916257244738758 11899 0.267929511957686 3 2 1 -7.78160960480259 LTS-040 NA NA NA NA LTS-040 chr5 175386659 175394264 7606 * THOC3 NA 0 NA 0.379286094535326 79 0.314053440441948 0 NA NA -5.76441376961756 LTS-040 chr5 175394265 175395032 768 * THOC3 NA 0 NA 1.432 1 NA NA NA NA NA LTS-040 chr5 175395033 180374817 4979785 * c(MIR1229, MIR4281, LOC100507387, HEIH, RGS14, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, OR2Y1, DBN1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, ZNF346, EIF4E1B, RASGEF1C, TSPAN17, PRELID1, FAM153A, ARL10, ZNF454, C5orf60, GRK6, GRM6, ZNF354C, HK3, HNRNPAB, HNRNPH1, PRR7-AS1, PFN3, ZNF879, SIMC1, LTC4S, MGAT1, MIR340, C5orf45, DDX41, NOP16, UIMC1, RAB24, FAM193B, NA NA NA NA NA NA NA NA NA LTS-040 TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, FAM153C, SLC34A1, SNCB, ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, PRR7, CANX, MXD3, THOC3, PHYKPL, SQSTM1, UNC5A, COL23A1, SCGB3A1, PDLIM7, ADAMTS2, MAML1, GFPT2) 0.3361858433839 164 0.0850904387239397 0.907377582246112 6980 0.235920986754187 3 2 1 -7.28236939534114 LTS-040 NA NA NA NA LTS-040 chr5 180374818 180375293 476 * BTNL8 NA 0 NA 1.915 1 NA NA NA NA NA LTS-040 chr5 180375294 180429824 54531 * c(BTNL3, BTNL8) NA 0 NA 1.75026668272839 63 0.312574062089027 7 NA NA -5.76448509157413 LTS-040 chr5 180429825 180430825 1001 * BTNL3 NA 0 NA 1.039 1 NA NA NA NA NA LTS-040 chr5 180430826 180687212 256387 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.361772452647714 2 0.0197989898732233 0.906654452743689 512 0.194188104793831 3 2 1 -7.89512782387225 LTS-040 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 1.02685232416057 17 0.19904429746401 3 NA NA -5.76443968369693 LTS-040 chr6 203389 312023 108635 * DUSP22 0.421 1 NA 0.663778159943821 25 0.623266417085556 1 1 0 -5.76732409998655 LTS-040 chr6 312024 367462 55439 * DUSP22 0.432698064185399 3 0.0610273162881454 0.497069507455595 87 0.19820860516837 0 0 0 -6.79811275229359 LTS-040 chr6 367463 367481 19 * character(0) 0.45 1 NA 2.325 1 NA NA NA NA NA LTS-040 chr6 367482 3012930 2645449 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, IRF4, LINC01011, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, FOXQ1) 0.411222204386062 26 0.0589643960369306 0.935132272307632 1057 0.265184013588623 3 2 1 -6.84656433123109 LTS-040 chr6 3012931 3015238 2308 * NQO2 NA 0 NA 1.033 1 NA NA NA NA NA LTS-040 chr6 3015239 24600960 21585722 * c(TMEM170B, SCARNA27, TFAP2A-AS1, LOC100130357, RANBP9, MIR3691, LOC100506207, ELOVL2-AS1, LOC100507194, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, MIR4639, MIR5689, ECI2, CAP2, FARS2, RPP40, NRSN1, SNRNP48, MBOAT1, HDGFL1, DSP, E2F3, EDN1, PIP5K1P1, F13A1, KDM1B, RBM24, RNF182, PHACTR1, SMIM13, SYCP2L, LINC00518, PXDC1, FAM217A, SIRT5, RNF144B, FAM50B, GCNT2, GMPR, GPLD1, LY86-AS1, CAGE1, MYLIP, HIVEP1, ID4, TUBB2B, NA NA NA NA NA NA NA NA NA LTS-040 C6orf52, KAAG1, JARID2, NHLRC1, PSMG4, HTATSF1P2, STMND1, CASC15, C6orf201, ERVFRD-1, MAK, NEDD9, NQO2, SLC35B3, TBC1D7, NRN1, NOL7, FAM8A1, DCDC2, TMEM14C, GFOD1, ELOVL2, CDKAL1, PAK1IP1, PRL, LYRM4, MRS2, RREB1, SLC22A23, ATXN1, BLOC1S5, MCUR1, KIF13A, PPP1R3G, BMP6, SOX4, BPHL, SSR1, MIR548A1, TFAP2A, TPMT, TUBB2A, HULC, NBAT1, DEK, ALDH5A1, TXNDC5, TMEM14B, RIOK1, DTNBP1, ADTRP, RIPK1, PRPF4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 GCM2, CD83, CDYL, LY86, EEF1E1, KIAA0319, NUP153) 0.380378250335013 252 0.0870793135707744 1.01249639439471 9042 0.451073152965669 3 2 1 -6.81002409544526 LTS-040 NA NA NA NA LTS-040 chr6 24600961 24601162 202 * KIAA0319 NA 0 NA 0.948 1 NA NA NA NA NA LTS-040 chr6 24601163 28059321 3458159 * c(ZSCAN16-AS1, LOC100131289, LINC00240, LOC100270746, MIR3143, SLC17A4, LINC01012, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, ZSCAN12P1, HIST1H2AA, HIST1H2BA, OR2B6, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1B, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, ZNF391, GUSBP2, VN1R10P, HIST1H2APS1, HCG11, GMNN, TDP2, BTN2A3P, CARMIL1, ACOT13, NA NA NA NA NA NA NA NA NA LTS-040 SLC17A1, BTN1A1, ZNF165, ZNF184, ZNF204P, ZNF322, C6orf62, OR2B2, HIST1H4I, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AC, HIST1H2AB, HIST1H2AM, HIST1H2BG, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H2BO, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, HIST1H4B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 HIST1H4E, HIST1H4L, HIST1H4G, CMAHP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, POM121L2, FAM65B, KIAA0319) 0.396898873349572 84 0.0653340186511998 0.965317819791388 3183 0.272578626090846 3 2 1 -6.74306515047301 LTS-040 NA NA NA NA LTS-040 chr6 28059322 28093152 33831 * c(ZSCAN16-AS1, ZSCAN12P1, ZSCAN16) NA 0 NA 0.653 1 NA NA NA NA NA LTS-040 chr6 28093153 29069241 976089 * c(ZSCAN16-AS1, ZSCAN23, NKAPL, TOB2P1, GPX6, ZKSCAN4, ZSCAN31, ZNF192P1, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, PGBD1, ZSCAN12) 0.47188180054476 35 0.0214041541558187 0.841770485127879 1260 0.203184510556615 2 1 1 -8.78636911169544 LTS-040 chr6 29069242 29069257 16 * character(0) NA 0 NA 0.986 1 NA NA NA NA NA LTS-040 chr6 29069258 29798140 728883 * character(0) 0.385879397646012 56 0.0593588252062836 1.01514563856987 872 0.334279405049666 3 2 1 -6.74389078416124 LTS-040 chr6 29798141 29855590 57450 * character(0) 0.316 1 NA 0.904716818094782 3 0.316443254523356 3 3 0 -5.76661336814782 LTS-040 chr6 29855591 29913526 57936 * character(0) 0.29863654656007 49 0.0986786769901026 1.08848448513022 140 3.08567633093973 8 6 2 -6.73433331917093 LTS-040 chr6 29913527 29942927 29401 * character(0) 0.426 1 NA 0.805498222237629 5 0.163993292545762 2 2 0 -5.76503862733273 LTS-040 chr6 29942928 31948356 2005429 * character(0) 0.395265388848557 246 0.064156027789876 1.00555998797752 6205 2.15721440009876 3 2 1 -6.73491664453406 LTS-040 chr6 31948357 31964398 16042 * character(0) NA 0 NA 0.516047032278977 39 0.30201894194826 1 NA NA -5.76592753894929 LTS-040 chr6 31964399 31965404 1006 * character(0) NA 0 NA 1.26 1 NA NA NA NA NA LTS-040 chr6 31965405 31979078 13674 * character(0) 0.388762943868781 7 0.0982899016273023 1.02704186631492 84 0.537457222009839 3 2 1 -6.73367731157445 LTS-040 chr6 31979079 31980617 1539 * character(0) NA 0 NA 2.282 1 NA NA NA NA NA LTS-040 chr6 31980618 31997535 16918 * character(0) NA 0 NA 2.04959358420847 39 0.77427800507944 8 NA NA -5.7644329049294 LTS-040 chr6 31997536 31997548 13 * character(0) NA 0 NA 1.36 1 NA NA NA NA NA LTS-040 chr6 31997549 32168996 171448 * character(0) 0.374175317860619 30 0.0813578444317124 1.05541745278702 1002 0.249497874990443 3 2 1 -6.77020935179975 LTS-040 chr6 32168997 32171683 2687 * character(0) 0.393 1 NA 1.23301119010823 25 0.269120004211256 4 4 0 -5.76445439727742 LTS-040 chr6 32171684 32427927 256244 * character(0) 0.37052769403051 48 0.0457606903372517 1.06383981102533 505 0.303654814358672 3 2 1 -6.87154208795016 LTS-040 chr6 32427928 32485400 57473 * HLA-DRB5 NA 0 NA 0.073 1 NA NA NA NA NA LTS-040 chr6 32485401 32498118 12718 * HLA-DRB5 0.278353884143767 10 0.12804951299313 0.512277081163479 46 0.343075798303586 2 2 0 -6.78474882569854 LTS-040 chr6 32498119 32546446 48328 * HLA-DRB5 0.478 1 NA 0.799 1 NA NA NA NA NA LTS-040 chr6 32546447 32557552 11106 * HLA-DRB5 0.353121669387323 50 0.107581769565559 1.15024459010207 102 1.04843846149048 12 8 4 -6.73785627718316 LTS-040 chr6 32557553 32557617 65 * HLA-DRB5 0.306 1 NA 1.23687700837053 3 0.296486649502694 4 4 0 -5.76441112986283 LTS-040 chr6 32557618 32627714 70097 * HLA-DQA1 0.25512091723052 39 0.0480090241179836 1.32367838939022 97 0.814338715786748 6 5 1 -6.74961982586942 LTS-040 chr6 32627715 32627752 38 * character(0) 0.342 1 NA 1.01479447371223 3 0.236721355183684 3 3 0 -5.7644106144572 LTS-040 chr6 32627753 32725764 98012 * character(0) 0.375895691612513 49 0.0619847194248459 1.19796278285661 145 0.431499827075613 6 4 2 -6.76084005745049 LTS-040 chr6 32725765 32726623 859 * character(0) NA 0 NA 0.868 1 NA NA NA NA NA LTS-040 chr6 32726624 32974551 247928 * character(0) 0.400132994274252 35 0.0683585210120727 0.950141741288643 694 0.251467965563716 3 2 1 -6.74412575963945 LTS-040 chr6 32974552 33035512 60961 * character(0) NA 0 NA 0.992289011014801 32 2.88956735167026 3 NA NA -5.76441080540581 LTS-040 chr6 33035513 33035518 6 * character(0) 0.029 1 NA 5.4326 2 10.4708372158104 20 20 0 -5.76441013596008 LTS-040 chr6 33035519 33053884 18366 * character(0) 0.306483276201493 56 0.047782882877699 1.53904877628039 153 3.28827327028699 11 8 3 -6.73330374185445 LTS-040 chr6 33053885 33053887 3 * character(0) 0.297 1 NA 2.586 1 NA NA NA NA NA LTS-040 chr6 33053888 33054807 920 * character(0) 0.224817592215362 33 0.0771386492759707 2.77046670504083 57 18.4080863561572 20 16 4 -6.73328316963646 LTS-040 chr6 33054808 33054859 52 * character(0) NA 0 NA 1.264 1 NA NA NA NA NA LTS-040 chr6 33054860 33055009 150 * character(0) 0.337143297158765 2 0.00777817459305203 1.81481612426738 4 1.19587150926288 19 13 6 -6.97760985678011 LTS-040 chr6 33055010 33086249 31240 * character(0) 0.377 1 NA 0.877654420372204 13 0.145383621621892 3 3 0 -5.7751964896799 LTS-040 chr6 33086250 39158276 6072027 * c(LOC100131047, MIR1275, MIR3925, LINC01016, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, NUDT3, STK38, BTBD9, SLC26A8, IP6K3, CLPS, MAPK14, CCDC167, DNAH8, FANCE, TMEM217, FGD2, PI16, C6orf89, ARMC12, C6orf1, LEMD2, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, GRM4, PACSIN1, HMGA1, CLPSL1, ITPR3, CLPSL2, C6orf222, LINC00336, RAB44, MLN, NA NA NA NA NA NA NA NA NA LTS-040 GGNBP1, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, CPNE5, BAK1, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, UQCC2, KCNK5, RNF8) 0.387040411278154 181 0.0796902004892752 1.00813088552948 8065 0.544769036657197 3 2 1 -6.74495485112039 LTS-040 NA NA NA NA LTS-040 chr6 39158277 41657642 2499366 * c(MIR4641, APOBEC2, FOXP4, TREML5P, ADCY10P1, OARD1, KIF6, TSPO2, UNC5CL, DAAM2, TREML4, TREML1, TREML3P, LINC00951, MDFI, MOCS1, NFYA, TREM2, TREM1, LRFN2, TDRG1, TFEB, TREML2, KCNK16, KCNK5, KCNK17, NCR2) 0.389182894323774 51 0.0607045561490643 1.09504836470161 1616 0.25971866469218 3 2 1 -6.99590793523789 LTS-040 chr6 41657643 41658458 816 * TFEB NA 0 NA 0.94 1 NA NA NA NA NA LTS-040 chr6 41658459 45518202 3859744 * c(LINC01512, TOMM6, MIR4647, MIR4642, DNPH1, CNPY3, FRS3, SLC22A7, CAPN11, KLHDC3, TAF8, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, USP49, GNMT, RPL7L1, GUCA1A, GUCA1B, PRICKLE4, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, MRPL2, PEX6, PGC, POLH, GTPBP2, MRPS18A, MRPS10, PPP2R5D, TMEM63B, TRERF1, AARS2, XPO5, PTK7, PRPH2, NA NA NA NA NA NA NA NA NA LTS-040 C6orf132, MRPL14, DLK2, SRF, TBCC, MIR586, BYSL, VEGFA, TFEB, TTBK1, SUPT3H, RUNX2, RRP36, CCND3, ABCC10, KLC4, TJAP1, MED20, POLR1C, MAD2L1BP, CUL7, CDC5L) 0.387477407600616 95 0.0756138862804462 1.02186124220548 5959 0.251144244877354 3 2 1 -6.79831875157526 LTS-040 NA NA NA NA LTS-040 chr6 45518203 46108916 590714 * c(ENPP4, CLIC5, RUNX2) 0.492 1 NA 0.988867492613124 113 0.234460066105035 3 3 0 -5.76492310698266 LTS-040 chr6 46108917 57512678 11403762 * c(ANKRD66, MIR5685, MLIP-IT1, RCAN2, CRISP3, IL17F, EFHC1, C6orf141, CRISP1, BEND6, GSTA5, OPN5, ADGRF4, ADGRF5, TDRD6, FAM83B, ADGRF2, ICK, ENPP4, CD2AP, DEFB110, DEFB112, DEFB113, DEFB114, ZNF451, FBXO9, ADGRF1, TNFRSF21, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GLYATL3, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MEP1A, PTCHD4, MIR133B, MUT, CYP39A1, RAB23, PGK2, PKHD1, HMGCLL1, NA NA NA NA NA NA NA NA NA LTS-040 CENPQ, LRRC1, PRIM2, KIAA1586, ENPP5, RHAG, ELOVL5, RPS16P5, BMP5, DST, TFAP2B, CRISP2, LOC730101, GSTA7P, PLA2G7, COL21A1, TFAP2D, GCM1, PAQR8, MLIP, SLC25A27, BAG2, TRAM2) 0.354208018930035 189 0.105985379164512 1.04850066362127 6699 0.332956243298189 3 2 1 -7.07632917188145 LTS-040 NA NA NA NA LTS-040 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 0.997723910565539 19 0.138654478209272 3 NA NA -5.77365897931164 LTS-040 chr6 62390154 62442604 52451 * KHDRBS2 0.249 1 NA 1.15630596193199 29 0.480521468587408 4 4 0 -5.76446264521848 LTS-040 chr6 62442605 167797642 105355038 * c(LIN28B-AS1, UST-AS1, TRAPPC3L, KHDC1L, LOC100129518, LOC100130476, TSTD3, C6orf99, LINC00271, LOC100132735, AIRN, LOC100287632, HMGN3-AS1, LOC100289495, NHEG1, MIR1913, MIR2113, LOC100422737, MIR3145, MIR4282, MIR3918, MIR3939, MIR3668, MIR3662, MIR3692, LOC100506804, SMLR1, LINC01013, GVQW2, LINC01277, LOC100507557, CAHM, MIR4464, MIR4466, MIR4643, MIR4465, RAET1E-AS1, MIR5695, KCNQ5-AS1, SYNJ2-IT1, RPS6KA2-IT1, NA NA NA NA NA NA NA NA NA LTS-040 UST, LOC100996634, EZR-AS1, TRDN, CITED2, SYNCRIP, SLC35A1, FUT9, TRAF3IP2, HBS1L, CGA, PDE10A, SMPDL3A, PNRC1, ASCC3, RAB32, KATNA1, FGFR1OP, BVES, SEC63, GTF3C6, MRAP2, RWDD2A, MTFR2, SFT2D1, KLHL32, TMEM200A, MB21D1, NUS1, GINM1, IL22RA2, SLC18B1, SLC16A10, TAGAP, CCR6, CNR1, COL9A1, COL10A1, COL12A1, COL19A1, ADAT2, COX7A2, RIPPLY2, IRAK1BP1, CLVS2, TAAR1, STXBP5, NCOA7, HINT3, PACRG, B3GAT2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SDHAF4, CD109, RAET1E, PM20D2, SRSF12, CTGF, LOC153910, ZC2HC1B, CNKSR3, RAET1L, SAMD3, LINC01312, SLC2A12, LINC01010, PNLDC1, RNF217, NKAIN2, KHDC3L, CFAP206, BVES-AS1, PRSS35, LCA5, OLIG3, TXLNB, C6orf118, EEF1A1, AIM1, OSTCP1, KHDRBS2, EPB41L2, EPHA7, C6orf163, EYA4, ESR1, FABP7, CCDC162P, AK9, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, SCAF8, CEP162, ANKRD6, RIMS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DOPEY1, ZNF292, FOXO3, CDK19, TAB2, MDN1, TSPYL4, SASH1, SYNE1, UFL1, PHF3, HEY2, HEBP2, ORC3, BRD7P3, FRK, VGLL2, LACE1, FUCA2, FYN, TMEM244, MMS22L, FAM26E, MCM9, SCML4, GABRR1, GABRR2, SHPRH, MTO1, ASF1A, CCDC28A, MTHFD1L, PNISR, IBTK, MOXD1, IPCEF1, SENP6, AMD1, TIAM2, FBXL4, FBXO5, SLC17A5, RGS17, SNORD50A, GJA1, PDE7B, FILIP1, SESN1, GPR6, GPR31, LINC00326, PHACTR2-AS1, CEP57L1, PPIL6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LINC01268, FLJ34503, DCBLD1, LOC285762, PACRG-AS1, PRR18, OSTM1, GRIK2, MRPL18, NDUFAF4, GRM1, DSE, HDAC2, HIVEP2, TAAR6, HSF2, HTR1B, HTR1E, SLC35D3, ZC3H12D, DPPA5, RSPH4A, IFNGR1, ECT2L, EYS, IGF2R, NUP43, C6orf58, RAET1G, IMPG1, GJB7, ARG1, KPNA5, HMGA1P7, SNHG5, SUMO4, NA, CENPW, SOGA3, LINC00222, CEP85L, THEMIS, LIN28B, SAMD5, IYD, ACAT2, LAMA2, LAMA4, DKFZp451B082, TCP10L2, LPA, GTF2H5, MIR30A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MIR30C2, MARCKS, MAN1A1, MAS1, ME1, MAP3K4, MAP3K5, LOC441155, OOEP, FAM26F, FLJ46906, LINC00602, SLC25A51P1, GSTM2P1, RFPL4B, MYB, MYO6, NMBR, NT5E, CLDN20, OPRM1, NOX3, PARK2, HDDC2, PCMT1, TFB1M, CYB5R4, TUBE1, C6orf203, CDC40, RWDD1, AIG1, SNX9, UBE2J1, VTA1, LGSN, MPC1, ENPP1, ENPP3, HECA, COQ3, PEX7, PGM3, PLAGL1, PLG, PLN, IL20RA, UNC93A, MTRF1L, POU3F2, AHI1, RMND1, PHIP, SOBP, AKIRIN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 QRSL1, VNN3, PREP, DDX43, FAM46A, PKIB, TMEM30A, LMBRD1, ECHDC1, KCNQ5, AGPAT4, TULP4, RARS2, HYMAI, PDSS2, GOPC, SMIM8, ADGRG6, ARFGEF3, NHSL1, LYRM2, SNX14, PLEKHG1, ARID1B, SERINC1, HACE1, FAM135A, TMEM181, ZBTB2, BEND3, ADGRB3, PTPRK, ABRACL, RRAGD, PRDM13, PBOV1, BCKDHB, SNORA33, REV3L, BACH2, TRMT11, SMAP1, RNY4, ROS1, FAM229B, RPS6KA2, RPS12, PRDM1, LINC01590, PERP, POPDC3, TSG1, LOC643623, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TRAF3IP2-AS1, CTAGE9, SGK1, LINC01625, ALDH8A1, RPS18P9, RAET1K, MICAL1, SIM1, SLC22A1, SLC22A3, SLC22A2, SMPD2, SOD2, SNORA20, SNORA29, ELOVL4, T, MAP3K7, SNORD50B, MIR548B, TCF21, TCP1, TCP10, DYNLT1, NR2E1, TNFAIP3, TPBG, TPD52L1, TSPYL1, TTK, MCHR2-AS1, TPI1P3, METTL24, KATNBL1P6, STXBP5-AS1, TMEM242, LOC729603, UTRN, EZR, VIP, PTP4A1, ULBP3, OR2A4, RNF217-AS1, EPM2A, ARMT1, OGFRL1, FAM184A, ZDHHC14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MANEA, ADGB, LINC00472, AGPAT4-IT1, CCDC170, MYCT1, ULBP2, ULBP1, LPAL2, KHDC1, GPR63, PPP1R14C, SPACA1, RNF146, SF3B5, TAAR8, SH3BGRL2, RSPH3, TTLL2, ARMC2, FBXO30, RPF2, STX7, L3MBTL3, MCHR2, FAXC, FNDC1, GJA10, RTN4IP1, RSPO3, LRP11, LTV1, SERAC1, USP45, REPS1, PEX3, DDO, PPIL4, SLC22A16, RNASET2, STX11, SNX3, RNGTT, CD164, WISP3, SYNJ2, VNN2, VNN1, CCNC, WASF1, LINC01621, UBE3D, TAAR5, MAP7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LINC00473, TBX18, LATS1, MFSD4B, TAAR2, TAAR3, HMGN3, ARHGAP18, SYTL3, MED23, QKI, FHL5, AKAP7, ATG5, TBPL1, WTAP, AKAP12, KIAA0408, PHACTR2, BCLAF1, ZBTB24, SNAP91, FIG4, CASP8AP2) 0.252136185372719 944 0.0724156746817188 0.940088406679636 44777 0.374537094222751 3 3 0 -7.77639586120203 LTS-040 NA NA NA NA LTS-040 chr6 167797643 167797669 27 * TCP10 NA 0 NA 1.621 1 NA NA NA NA NA LTS-040 chr6 167797670 170070878 2273209 * c(HGC6.3, DACT2, WDR27, LINC01558, KIF25, AFDN, SMOC2, AFDN-AS1, TCP10, THBS2, FRMD1) 0.28368115133974 39 0.0642121672983384 1.0018383996557 1120 0.241279409291416 4 3 1 -7.60234414448938 LTS-040 chr6 170070879 170072349 1471 * WDR27 NA 0 NA 0.887 1 NA NA NA NA NA LTS-040 chr6 170072350 170885010 812661 * c(MIR4644, LOC154449, WDR27, DLL1, C6orf120, LINC00242, PDCD2, PHF10, ERMARD, PSMB1, TBP, TCTE3, LINC00574, FAM120B) 0.24924924860738 16 0.086232800217396 0.880811039038447 562 0.321836750847859 2 2 0 -6.80183229697276 LTS-040 chr6 170885011 170893599 8589 * PDCD2 NA 0 NA 0.883032242876421 107 0.206887023144561 3 NA NA -5.76571892981129 LTS-040 chr7 193047 228788 35742 * FAM20C 0.477 1 NA 0.603844426888041 51 0.160903612604005 1 1 0 -5.76555510008063 LTS-040 chr7 228789 2854010 2625222 * c(WI2-2373I1.2, MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, AMZ1, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GNA12, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, HRAT92, LOC442497, MIR339, NUDT1, PDGFA, GET4, CYP2W1, DNAAF5, CHST12, PRKAR1B, FAM20C, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, EIF3B, ZFAND2A, COX19) 0.450115519874948 140 0.0458616014231692 0.656218288597018 3150 0.177500361320303 2 1 1 -8.12410928600947 LTS-040 chr7 2854011 2966334 112324 * c(GNA12, CARD11) 0.471 1 NA 0.68513138726777 93 0.171144166185846 2 2 0 -5.80357507425949 LTS-040 chr7 2966335 5348991 2382657 * c(RBAK-RBAKDN, MIR4656, SDK1, FOXK1, MMD2, SLC29A4, WIPI2, RBAKDN, RNF216P1, RADIL, PAPOLB, RBAK, ZNF890P, CARD11, TNRC18, AP5Z1) 0.407772501231065 32 0.137206104532443 0.678496212090524 1445 0.19530212495192 2 1 1 -7.40562154007115 LTS-040 chr7 5348992 5352122 3131 * TNRC18 NA 0 NA 0.418 1 NA NA NA NA NA LTS-040 chr7 5352123 6844536 1492414 * c(ANKRD61, RNF216-IT1, KDELR2, DAGLB, CCZ1B, RSPH10B, EIF2AK1, GRID2IP, ZNF815P, PMS2CL, CCZ1, PMS2, RNF216, ZNF853, ZDHHC4, RAC1, ACTB, OCM, FSCN1, MIR589, RSPH10B2, ZNF12, C7orf26, AIMP2, FBXL18, USP42, TNRC18, FAM220A, CYTH3) 0.418623177142351 54 0.0796913069444574 0.622980409749629 2159 0.212554534382621 1 1 0 -7.51003403252122 LTS-040 chr7 6844537 6844636 100 * CCZ1B NA 0 NA 0.223 1 NA NA NA NA NA LTS-040 chr7 6844637 6864369 19733 * CCZ1B 0.307 1 NA 1.0219440553821 39 0.472254457474557 3 3 0 -5.7645029818983 LTS-040 chr7 6864370 26192219 19327850 * c(LOC100131257, MIR3146, ISPD-AS1, LRRC72, LOC100506178, KLHL7-AS1, RNU6-16P, MACC1-AS1, ARL4A, GPNMB, AGR2, IGF2BP3, NUPL2, GLCCI1, MALSU1, CLK2P1, C7orf31, AGR3, DGKB, DFNA5, PER4, AHR, ETV1, VWDE, PRPS1L1, TWISTNB, SP8, CCZ1B, THSD7A, FERD3L, RPL23P8, SNX13, TMEM196, STEAP1B, RPS2P32, SOSTDC1, OSBPL3, TSPAN13, BZW2, TRA2A, NXPH1, ICA1, COL28A1, ABCB5, FAM221A, MACC1, IL6, ITGB8, AGMO, MIR148A, MEOX2, NA NA NA NA NA NA NA NA NA LTS-040 NDUFA4, NPY, MPP6, CYCS, MIOS, TOMM7, TMEM106B, CDCA7L, KLHL7, STK31, C1GALT1, ANKMY2, RPA3, NPVF, SP4, SNORD93, TWIST1, UMAD1, ISPD, FAM126A, SCIN, DNAH11, CCDC126, NFE2L3, PHF14, HDAC9, RAPGEF5) 0.437109967861964 166 0.0863640648516493 0.650266396393241 6640 0.255130207995539 1 1 0 -9.21289270498362 LTS-040 NA NA NA NA LTS-040 chr7 26192220 26192331 112 * NFE2L3 NA 0 NA 0.963 1 NA NA NA NA NA LTS-040 chr7 26192332 26685934 493603 * c(CBX3, C7orf71, SNX10, HNRNPA2B1, LOC441204, NFE2L3, KIAA0087) 0.455914741486774 13 0.0357284990032557 0.773760865372249 363 0.200307734460115 2 1 1 -7.13486838189246 LTS-040 chr7 26685935 26894448 208514 * c(C7orf71, SKAP2) 0 1 NA 0.73873508807969 69 0.233212808355898 2 2 0 -5.77150383556896 LTS-040 chr7 26894449 28060226 1165778 * c(HOXA-AS3, HOTTIP, HOTAIRM1, HOXA10-HOXA9, HOXA10-AS, HIBADH, EVX1, HOXA11-AS, JAZF1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, MIR196B, TAX1BP1, SKAP2) 0.385122744725403 9 0.071557669050913 0.779481012996101 997 0.171243237218572 2 1 1 -6.92004144297365 LTS-040 chr7 28060227 28849033 788807 * c(JAZF1-AS1, JAZF1, CREB5) 0.120353386245076 2 0.0381837661840736 2.1599794985296 161 0.610404952833854 7 7 0 -6.84525951360501 LTS-040 chr7 28849034 28857620 8587 * CREB5 NA 0 NA 1.55 1 NA NA NA NA NA LTS-040 chr7 28857621 29070351 212731 * c(LOC100506497, CPVL, CREB5, TRIL) 0.188023280052308 7 0.0272946881279124 1.67969210087974 228 0.507766606384508 8 7 1 -6.821147953517 LTS-040 chr7 29070352 29103697 33346 * CPVL NA 0 NA 1.039 1 NA NA NA NA NA LTS-040 chr7 29103698 30880542 1776845 * c(MIR550B1, INMT-FAM188B, MIR550A3, NOD1, INMT, CHN2, CRHR2, DKFZP586I1420, MTURN, PRR15, ZNRF2, GARS, LOC401320, DPY19L2P3, CPVL, FKBP14, WIPF3, LOC646762, MIR550A1, GGCT, FAM188B, PLEKHA8, SCRN1) 0.27828108596263 36 0.045787154225432 1.19326032572321 1411 0.325776738241507 5 4 1 -6.94212940257424 LTS-040 chr7 30880543 30882038 1496 * c(INMT-FAM188B, FAM188B) NA 0 NA 1.412 1 NA NA NA NA NA LTS-040 chr7 30882039 32249094 1367056 * c(INMT-FAM188B, PPP1R17, ADCYAP1R1, CCDC129, GHRHR, AQP1, PDE1C, NEUROD6, FAM188B) 0.290481264895464 14 0.0450472889501493 1.33152238624628 964 0.353166160712344 5 4 1 -6.75617456019356 LTS-040 chr7 32249095 36661423 4412329 * c(DPY19L1P1, LOC100130673, MIR550B2, AOAH-IT1, FKBP9, BMPER, AVL9, DPY19L1, KIAA0895, LSM5, KBTBD2, BBS9, AOAH, NPSR1, LINC00997, LOC401324, NPSR1-AS1, ZNRF2P1, RP9P, NT5C3A, PDE1C, ANLN, DPY19L2P1, TBX20, RP9, HERPUD2, MIR550A2, EEPD1, SEPT7) 0.289135912088716 55 0.0901099889080567 1.03947322043423 1948 0.692290984071652 4 3 1 -6.9436955954254 LTS-040 chr7 36661424 37311508 650085 * c(MIR1200, AOAH, ELMO1) NA 0 NA 0.955921195267689 194 0.210022974787454 3 NA NA -5.76991621886566 LTS-040 chr7 37311509 37354424 42916 * ELMO1 NA 0 NA 0.781 1 NA NA NA NA NA LTS-040 chr7 37354425 37923923 569499 * c(GPR141, NME8, ELMO1) 0.439 1 NA 0.62721461899138 83 0.159845617739217 1 1 0 -5.83901185511265 LTS-040 chr7 37923924 57532487 19608564 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, MIR3943, TRG-AS1, LOC100506895, EGFR-AS1, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, IKZF1, YKT6, ADCY1, ZPBP, POU6F2, C7orf57, MPLKIP, ABCA13, DDC, AEBP1, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, TMED4, HECW1, NACAD, COBL, NUDCD3, SEC61G, LINC00957, SUN3, SUMF2, GBAS, GCK, VPS41, AMPH, GLI3, POLM, POM121L12, VSTM2A-OT1, INHBA-AS1, SPDYE1, SNHG15, GRB10, DBNL, NA NA NA NA NA NA NA NA NA LTS-040 NPC1L1, HPVC1, HUS1, FAM183BP, SEPT14, IGFBP1, IGFBP3, ZNF713, LINC00265, FKBP9P1, INHBA, VWC2, NUPR2, RASA4CP, C7orf65, LINC01446, ZNF716, TARP, OGDH, CHCHD2, NME8, MRPS17, UBE2D4, PGAM2, PHKG1, POLD2, DDX56, EPDR1, PPIA, URGCP, COA1, LANCL2, PSMA2, YAE1D1, PSPH, PURB, MYL7, RALA, FIGNL1, MYO1G, SEPT7P2, GUSBP10, SFRP4, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, LOC650226, SNORA5B, SNORA5C, SNORA9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SNORA15, UPP1, C7orf25, SUGCT, C7orf69, VOPP1, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, CCT6A, ZNF479, TBRG4, STK17A, H2AFV) 0.434297074589946 207 0.0750230357194414 0.654789050215391 9208 0.242636288323046 1 1 0 -9.71359030174313 LTS-040 NA NA NA NA LTS-040 chr7 57532488 57533232 745 * ZNF716 NA 0 NA 1.22834779067252 15 0.253394892270092 4 NA NA -5.76442171393632 LTS-040 chr7 62758725 63023528 264804 * ZNF733P 0.207 1 NA 0.670080867672936 7 0.429944514692635 1 1 0 -5.78151338888322 LTS-040 chr7 63023529 64643425 1619897 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.340985796404064 10 0.0557176413315887 0.950877559043085 599 0.265652380989658 3 2 1 -7.20779935571688 LTS-040 chr7 64643426 64643763 338 * character(0) NA 0 NA 0.649 1 NA NA NA NA NA LTS-040 chr7 64643764 65157832 514069 * c(ZNF92, LOC441242, INTS4P2) 0.353 1 NA 0.624948480975607 94 0.205035082456025 1 1 0 -5.80172283032751 LTS-040 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 0.867 1 NA NA NA NA NA LTS-040 chr7 65159973 71488825 6328853 * c(MIR3914-1, MIR3914-2, MIR4650-2, VKORC1L1, KCTD7, AUTS2, CRCP, RABGEF1, LINC00174, GUSB, ASL, LOC441242, GS1-124K5.11, SBDS, PMS2P4, TMEM248, TYW1, CCT6P1, WBSCR17, INTS4P2, STAG3L4, SNORA22, GTF2IRD1P1, CALN1, TPST1) 0.242131891248529 13 0.116747206632151 1.08939140253458 1395 0.691897381015737 3 3 0 -6.91532593569431 LTS-040 chr7 71488826 79082467 7593642 * c(POM121C, PMS2P9, LOC100133091, MIR4284, APTR, MAGI2-AS3, MIR4651, MIR4650-1, MIR548AU, MAGI2-AS2, CCL26, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, POMZP3, NSUN5P2, TBL2, GTF2I, GTF2IP1, HIP1, HSPB1, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, NA NA NA NA NA NA NA NA NA LTS-040 MLXIPL, STYXL1, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, NCF1, NCF1B, NCF1C, SNORA14A, STX1A, MIR590, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, FKBP6, TMEM60, BAZ1B, BCL7B, GTF2IRD1, MAGI2, POM121) 0.341834064872337 81 0.0600125218415105 0.901002207001391 4551 0.2551859552891 3 2 1 -7.58139316775414 LTS-040 NA NA NA NA LTS-040 chr7 79082468 86506499 7424032 * c(MIR548M, MAGI2-AS3, SEMA3A, SEMA3C, KIAA1324L, SEMA3D, PCLO, GNAI1, GRM3, HGF, GNAT3, CACNA2D1, CD36, SEMA3E, MAGI2) 0.333587846713731 31 0.121263030560205 0.989714471133522 1920 0.257298790185562 3 2 1 -6.87478079791735 LTS-040 chr7 86506500 100549499 14043000 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPHB4, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, NA NA NA NA NA NA NA NA NA LTS-040 ZKSCAN5, CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, SRRT, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CROT, SAMD9, ZCWPW1, C7orf43, PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SLC12A9, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, TRIP6, MIR653, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.338912384266677 198 0.0901960025390227 0.908838407044162 12825 0.39364731828956 3 2 1 -7.22754186872381 LTS-040 NA NA NA NA LTS-040 chr7 100549500 100549573 74 * character(0) 0.281 1 NA 1.495 1 NA NA NA NA NA LTS-040 chr7 100549574 100550504 931 * character(0) 0.377198605245809 34 0.0984960751862452 1.62232374654628 57 0.366550049238151 11 7 4 -6.73433417318378 LTS-040 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.355 1 NA NA NA NA NA LTS-040 chr7 100550727 100551118 392 * character(0) 0.273074009324084 9 0.0871923161752227 0.73372713697531 39 0.372550517365369 9 7 2 -6.73532122159852 LTS-040 chr7 100551119 100551147 29 * character(0) NA 0 NA 1.454 1 NA NA NA NA NA LTS-040 chr7 100551148 100552867 1720 * character(0) 0.343219079911308 63 0.0858659602732104 1.6405826379098 99 0.528226414250963 18 12 6 -6.73791865787907 LTS-040 chr7 100552868 100552886 19 * character(0) NA 0 NA 1.076 1 NA NA NA NA NA LTS-040 chr7 100552887 101961863 1408977 * c(MIR4285, MIR4653, MUC12, ZNHIT1, SH2B2, AP1S1, COL26A1, MUC17, CUX1, CLDN15, MOGAT3, NAT16, SERPINE1, FIS1, IFT22, VGF, TRIM56, PLOD3, MYL10) 0.355815586817126 72 0.0806762194611366 0.96578992956167 1757 0.255607809608665 3 2 1 -6.85308884453685 LTS-040 chr7 101961864 101961999 136 * SH2B2 NA 0 NA 0.308 1 NA NA NA NA NA LTS-040 chr7 101962000 115897586 13935587 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR3666, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, SH2B2, DUS4L, ZNF277, BMT2, C7orf66, THAP5, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, TFEC, LAMB4, POLR2J2, TES, HBP1, DNAJC2, GPR22, SLC26A4-AS1, LSMEM1, MDFIC, IFRD1, DPY19L2P2, SLC26A5, LHFPL3, LAMB1, LINC00998, DNAJB9, EIF3IP1, NA NA NA NA NA NA NA NA NA LTS-040 NRCAM, ORC5, PNPLA8, SLC26A4, PIK3CG, GPR85, POLR2J, PUS7, LRRN3, ALKBH4, POLR2J3, PPP1R3A, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, TMEM168, LHFPL3-AS1, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, PRKRIP1, CBLL1, ORAI2, ARMC10, IMMP2L, FOXP2, PMPCB, DOCK4) 0.319597212548473 74 0.106865225476495 0.893435859598317 6660 0.301777446678711 3 2 1 -7.69400532559359 LTS-040 NA NA NA NA LTS-040 chr7 115897587 115897665 79 * TES NA 0 NA 0.928 1 NA NA NA NA NA LTS-040 chr7 115897666 140426257 24528592 * c(LOC100129148, LOC100130705, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, SMKR1, MIR4468, RNA5SP244, C7orf55-LUC7L2, AASS, FAM3C, CFTR, CHRM2, TSGA13, CPA1, CPA2, KLF14, SSMEM1, SVOPL, LRGUK, ASZ1, ASB15, CLEC2L, FMC1, FEZF1-AS1, IQUB, C7orf77, TMEM213, MGC27345, RNF133, ZNF800, KLHDC10, AKR1B1, NUP205, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, MKRN1, UBN2, POT1, HYALP1, TES, SLC13A4, COPG2, SND1, SND1-IT1, DENND2A, NA NA NA NA NA NA NA NA NA LTS-040 TPI1P2, FLJ40288, GPR37, HIPK2, WDR91, GRM8, HILPDA, FSCN3, MESTIT1, ST7-OT4, TSPAN33, AGBL3, FAM71F2, STRA8, KLRG2, LOC349160, IMPDH1, IRF5, KCND2, KCP, LINC-PINT, RNF148, ARF5, FEZF1, FAM180A, LEP, PRRT4, RAB19, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, MEST, MET, MKLN1, AKR1B15, LMOD2, MIR335, NDUFA5, NDUFB2, CNOT4, NRF1, ATP6V0A4, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LUC7L2, LSM8, PODXL, ING3, CHCHD3, RBM28, TMEM140, METTL2B, ANKRD7, ZC3HAV1, AKR1B10, MIR490, STRIP2, PTN, KIAA1549, PTPRZ1, EXOC4, OPN1SW, LRRC4, NA, C7orf73, CCDC136, PARP12, CREB3L2, SLC13A1, SMO, SPAM1, BPGM, AKR1D1, TBXAS1, MIR592, MIR593, TMEM229A, UBE2H, WNT2, LUZP6, C7orf49, GCC1, ST7, CPED1, TTC26, CALD1, KDM7A, CALU, CAPZA2, CTTNBP2, SLC37A3, FAM71F1, SLC35B4, TMEM209, CAV1, CAV2, TRIM24, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 WASL, ADCK2, PLXNA4, DGKI, ZC3HAV1L, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, CEP41) 0.345750366506691 274 0.0799940256719508 0.925224512479287 14115 0.282502589711746 3 2 1 -7.48268608852309 LTS-040 NA NA NA NA LTS-040 chr7 140426258 141313968 887711 * c(TMEM178B, MRPS33, AGK, BRAF) 0 1 NA 0.903121071744516 207 0.25627165600509 3 3 0 -5.81816980883491 LTS-040 chr7 141313969 142149324 835356 * c(MOXD2P, OR9A4, PRSS37, PRSS58, CLEC5A, WEE2-AS1, WEE2, TAS2R3, TAS2R4, TAS2R5, AGK, KIAA1147, TAS2R38, SSBP1, NA, MGAM, MGAM2) 0.21272644743734 35 0.111904393467419 0.931798880129819 1474 0.284317583067221 3 3 0 -6.76327844523919 LTS-040 chr7 142149325 142161957 12633 * character(0) NA 0 NA 1.032 1 NA NA NA NA NA LTS-040 chr7 142161958 143305591 1143634 * c(MTRNR2L6, CLCN1, OR9A2, C7orf34, TMEM139, PRSS3P2, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, EPHA1-AS1, TAS2R60, OR6V1, GSTK1, KEL, CTAGE15, PIP, TRPV6, TRPV5, PRSS1, ZYX, CASP2, OR6W1P, FAM131B) 0.305429974959891 62 0.0845682865024899 1.09442872613631 1655 0.985399666711171 4 3 1 -6.78936805834082 LTS-040 chr7 143305592 143321183 15592 * TCAF2 NA 0 NA 0.143031060207053 39 0.168398172998895 0 NA NA -6.06798376630115 LTS-040 chr7 143321184 143400288 79105 * c(LOC154761, TCAF2) NA 0 NA 1.414 1 NA NA NA NA NA LTS-040 chr7 143400289 143840031 439743 * c(OR2A14, OR6B1, OR2F2, LOC154761, OR2F1, TCAF2, CTAGE6, OR2A12, OR2A25, OR2A5, OR2A2, TCAF1) 0.299207573499303 16 0.0327167133638655 1.14621907852522 289 0.375592105404846 5 4 1 -6.93491399717489 LTS-040 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.516 1 NA NA NA NA NA LTS-040 chr7 143883365 143974096 90732 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.643553449513559 55 0.331175290031235 1 NA NA -5.76945631403336 LTS-040 chr7 143974097 143975446 1350 * ARHGEF34P NA 0 NA 2.186 1 NA NA NA NA NA LTS-040 chr7 143975447 148724984 4749538 * c(MIR548I4, MIR548F4, MIR548AQ, NOBOX, C7orf33, EZH2, CNTNAP2, TPK1, ARHGEF34P, ARHGEF5, CUL1, PDIA4) 0.29204535729073 19 0.149653850113524 1.01884080652088 957 0.362958953493506 3 3 0 -7.00605521501278 LTS-040 chr7 148724985 148877830 152846 * c(ZNF786, ZNF425, ZNF398, PDIA4) 0 1 NA 0.896772574262618 247 0.319256074488888 3 3 0 -5.7715027691266 LTS-040 chr7 148877831 148921056 43226 * c(ZNF398, ZNF282) 0.405 1 NA 0.907781268762838 98 0.29731133846492 3 3 0 -5.76613284784036 LTS-040 chr7 148921057 149512404 591348 * c(ZNF783, LOC155060, ZNF746, ZNF467, SSPO, ZNF777, ZNF212, ZNF767P, ZNF282, KRBA1) 0.372024683248992 17 0.0622349083997833 0.870472089598129 1084 0.179836254931827 3 2 1 -6.94369448510966 LTS-040 chr7 149512405 153417697 3905293 * c(LINC01003, WDR86-AS1, MIR3907, PRKAG2-AS1, GIMAP1-GIMAP5, ABCF2, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, ASB10, GIMAP8, CRYGN, ATP6V0E2, GALNTL5, GIMAP7, GIMAP1, FABP5P3, SSPO, AOC1, GIMAP2, GBX1, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, WDR86, KCNH2, ATP6V0E2-AS1, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, GIMAP4, GIMAP5, TMEM176A, ACTR3B, KMT2C, RARRES2, RHEB, GALNT11, ZNF862, SLC4A2, ACTR3C, LRRC61, NA NA NA NA NA NA NA NA NA LTS-040 SMARCD3, LOC728743, XRCC2, MIR671, TMUB1, ASIC3) 0.397513933099634 131 0.0524181536330637 0.780143453592666 4117 0.187197223181449 2 1 1 -6.90168185625038 LTS-040 NA NA NA NA LTS-040 chr7 153417698 153417796 99 * character(0) NA 0 NA 0.823 1 NA NA NA NA NA LTS-040 chr7 153417797 154767588 1349792 * c(PAXIP1-AS2, DPP6, PAXIP1) 0.309725471908195 9 0.174953882812332 0.933457526977138 439 0.244910381199058 3 2 1 -6.89426489115166 LTS-040 chr7 154767589 158937585 4169997 * c(HTR5A-AS1, DNAJB6, LOC100506585, MIR5707, C7orf13, RNF32, LINC00689, RBM33, EN2, PAXIP1-AS1, PAXIP1, CNPY1, LOC285889, MNX1, HTR5A, INSIG1, MIR153-2, NCAPG2, WDR60, ESYT2, PTPRN2, LMBR1, LINC00244, NOM1, MNX1-AS1, SHH, MIR595, VIPR2, UBE3C) 0.392070462843924 65 0.0778172384253891 0.776181136333447 2688 0.480829579802432 2 1 1 -6.843411374803 LTS-040 chr7 158937586 159025951 88366 * VIPR2 NA 0 NA 0.646 2 0 0 NA NA -Inf LTS-040 chr8 182757 182794 38 * ZNF596 0.262 1 NA 0.721 1 NA NA NA NA NA LTS-040 chr8 182795 22079149 21896355 * c(NAT2, FAM66B, LOC100128993, ZNF705G, FAM66E, ZNF705B, FAM66D, FAM66A, LOC100287015, DEFB4B, MIR1322, MIR548I3, MIR3926-2, MIR3926-1, LOC100506990, MIR4659A, MIR4660, MIR4659B, GS1-24F4.2, LZTS1-AS1, LINC00681, NPM2, DLC1, LZTS1, CLDN23, VPS37A, SGCZ, CTSB, LOC157273, SGK223, LINC00599, TDRP, ERICH1, TDH, C8orf48, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, DEFB4A, ZNF596, DEFT1P, PRSS55, C8orf74, LGI3, DMTN, CLN8, NA NA NA NA NA NA NA NA NA LTS-040 FDFT1, FGL1, XPO7, PSD3, DEFB107A, DEFB109P1, DEFB130, NEIL2, GATA4, FBXO25, FGF20, GFRA2, ANGPT2, FAM86B3P, XKR6, LOC286083, MICU3, LOC286114, CNOT7, LOC340357, USP17L2, XKR5, FAM90A25P, USP17L8, LOC392196, USP17L7, USP17L1, LPL, MIR124-1, ASAH1, FAM90A7P, FAM90A10P, MSR1, MSRA, DEFA8P, DEFA9P, DEFA10P, MIR383, DEFB107B, PCM1, ZDHHC2, PDGFRL, ATP6V1B2, PINX1, INTS10, AGPAT5, CSGALNACT1, HR, MTUS1, KIAA1456, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DEFB135, DEFB136, DEFB134, ERICH1-AS1, SH2D4A, BLK, SFTPC, CSMD1, USP17L4, USP17L3, FAM160B2, BMP1, LOC649352, FAM86B2, SPAG11A, SLC7A2, SLC18A1, MTMR9, MIR596, MIR597, MIR598, DEFA11P, DEFA1B, ZNF705D, FAM90A2P, LOC729732, MCPH1, PPP1R3B, NUDT18, TUSC3, REEP4, SOX7, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, TNKS, FGF17, NAT1, ERI1, DOK2, MTMR7, LONRF1, MYOM2, DLGAP2, MFHAS1, RP1L1, ARHGEF10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PHYHIP, KBTBD11) 0.398940332629036 350 0.0765322415396806 0.824829982058072 9594 1.20307666308583 2 1 1 -6.83247851351178 LTS-040 NA NA NA NA LTS-040 chr8 22079150 38070840 15991691 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, LOC100507156, SMIM18, MIR548O2, NRG1-IT3, SORBS3, DCTN6, PNMA2, ADAM28, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, NKX2-6, UNC5D, ADRA1A, ADRB3, PEBP4, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EGR3, EIF4EBP1, R3HCC1, EPHX2, EXTL3, PTK2B, TRIM35, RHOBTB2, KIF13B, LEPROTL1, SLC39A14, LOC254896, ADGRA2, LSM1, ADAMDEC1, GNRH1, LOC286059, SCARA5, NA NA NA NA NA NA NA NA NA LTS-040 FAM183CP, GSR, GTF2E2, PURG, NRG1, LOC389641, NUGGC, LOXL2, MIR320A, NEFM, NEFL, NKX3-1, SLC25A37, SCARA3, SARAF, PNOC, C8orf58, KCTD9, PIWIL2, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, PPP3CC, INTS9, PBK, ZNF395, BIN3, TEX15, CCAR2, LINC00589, MBOAT4, PDLIM2, EBF2, POLR3D, BNIP3L, STAR, STC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, DOCK5, BIN3-IT1, ZNF703, TTI2, RAB11FIP1, STMN4, MAK16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FUT10, ADAM7, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, ASH2L, CHMP7, BAG4, ENTPD4, PHYHIP) 0.39571268686856 196 0.0789026332663771 0.788331047223132 10297 0.426414788052354 2 1 1 -6.82310477050543 LTS-040 NA NA NA NA LTS-040 chr8 38070841 38090461 19621 * DDHD2 NA 0 NA 1.259 1 NA NA NA NA NA LTS-040 chr8 38090462 38988414 897953 * c(LETM2, HTRA4, ADAM32, FGFR1, DDHD2, RNF5P1, C8orf86, WHSC1L1, PLEKHA2, TACC1, TM2D2, PLPP5, ADAM9) 0.32592801413997 20 0.0609966349373817 1.37585407933336 1305 0.318685174964741 4 3 1 -6.86003078755795 LTS-040 chr8 38988415 38991571 3157 * ADAM32 NA 0 NA 1.838 1 NA NA NA NA NA LTS-040 chr8 38991572 39862990 871419 * c(LOC100130964, ADAM3A, IDO2, ADAM32, ADAM2, ADAM5, IDO1, ADAM18) 0.328106856305747 5 0.0382583324257606 1.55054374484532 478 0.510425557417027 7 5 2 -6.77405012606603 LTS-040 chr8 39862991 39871116 8126 * IDO2 NA 0 NA 0.716 1 NA NA NA NA NA LTS-040 chr8 39871117 41906779 2035663 * c(GPAT4, NKX6-3, IDO2, ANK1, GOLGA7, C8orf4, MIR486-1, SFRP1, ZMAT4, KAT6A, GINS4) 0.400499126895194 15 0.0430097441894054 0.81294040975522 1247 0.205480416744218 2 1 1 -6.97844481680611 LTS-040 chr8 41906780 42819583 912804 * c(MIR4469, AP3M2, CHRNB3, SMIM19, DKK4, IKBKB, PLAT, POLB, THAP1, SLC20A2, VDAC3, KAT6A, RNF170, HOOK3, CHRNA6) 0.341076592160575 2 0.0622253967444162 1.36572350463738 963 0.382793187050816 4 3 1 -6.82972024504526 LTS-040 chr8 42819584 42821640 2057 * HOOK3 NA 0 NA 2.768 1 NA NA NA NA NA LTS-040 chr8 42821641 42918377 96737 * c(FNTA, HOOK3) 0 2 0 2.77781281889508 114 0.931193600107867 0 0 0 -Inf LTS-040 chr8 42918378 43212050 293673 * c(HGSNAT, FNTA, POTEA, POMK) NA 0 NA 2.48172628686864 291 0.574753401053662 11 NA NA -5.765109082206 LTS-040 chr8 47752736 47757610 4875 * LINC00293 0.252 1 NA 1.68503414718364 19 0.558316606190912 7 7 0 -5.76443643131594 LTS-040 chr8 47757611 51705837 3948227 * c(LOC100287846, CEBPD, SPIDR, MCM4, C8orf22, LINC00293, SNTG1, PRKDC, SNAI2, UBE2V2, EFCAB1) 0.153593815770406 7 0.175858574130573 1.5740917987851 1197 0.47146240508289 6 6 0 -6.75312358417391 LTS-040 chr8 51705838 53851068 2145231 * c(PCMTD1, PXDNL, FAM150A, ST18, RB1CC1) 0.28604356233344 12 0.144084860307032 1.46047694144023 734 0.474848092816623 5 4 1 -6.75230226306267 LTS-040 chr8 53851069 54745538 894470 * c(NPBWR1, OPRK1, ATP6V1H) 0.291 1 NA 1.46280858839909 247 0.331153778163274 5 5 0 -5.78166182001586 LTS-040 chr8 54745539 59061057 4315519 * c(SBF1P1, LINC00968, LINC01606, LYPLA1, XKR4, TMEM68, SDR16C5, LINC00588, SNORD54, LOC286177, MRPL15, LYN, MOS, ATP6V1H, PENK, PLAG1, IMPAD1, RP1, RPS20, SOX17, TCEA1, CHCHD7, RGS20, FAM110B, TGS1) 0.309157983898251 21 0.0819728468399605 1.43338821158899 1680 0.335150136322445 5 4 1 -6.82734556876505 LTS-040 chr8 59061058 61774849 2713792 * c(UBXN2B, CYP7A1, CHD7, RAB2A, SDCBP, CA8, NSMAF, FAM110B, TOX) 0.294270905238529 23 0.101957946845262 1.25931437535819 997 0.428837810639905 5 4 1 -6.81138609083226 LTS-040 chr8 61774850 66444299 4669450 * c(MIR124-2HG, LOC100130298, MIR4470, YTHDF3-AS1, CLVS1, YTHDF3, BHLHE22, NKAIN3, LINC01289, LINC01299, LOC401463, MIR124-2, ASPH, LINC00251, CHD7, UG0898H09, TTPA, GGH, CYP7B1) 0.322645835620972 12 0.0696873972346029 1.45725969815756 892 0.455830875007935 5 4 1 -6.96010823713626 LTS-040 chr8 66444300 66963851 519552 * c(LINC01299, PDE7A, ARMC1, DNAJC5B, MTFR1) 0.352615167120309 2 0.0473761543394987 1.18834198280658 302 0.267998946871011 4 3 1 -6.86089015425493 LTS-040 chr8 66963852 73150455 6186604 * c(TCF24, MSC-AS1, LINC00967, RRS1-AS1, LINC01592, C8orf44-SGK3, NCOA2, ARFGEF1, COPS5, C8orf34, ADHFE1, CRH, MCMDC2, EYA1, RRS1, SULF1, TRAM1, SGK3, C8orf46, PTTG3P, PPP1R42, C8orf34-AS1, LACTB2-AS1, XKR9, LOC392232, MYBL1, LACTB2, C8orf44, CPA6, PRDM14, SNHG6, SNORD87, CSPP1, VCPIP1, PREX2, SLCO5A1, TRIM55, DNAJC5B, TRPA1, MSC) 0.321540201981113 69 0.0806713703334389 1.39774391848282 3543 0.429538055486157 5 4 1 -6.86895825894419 LTS-040 chr8 73150456 79073389 5922934 * c(STAU2-AS1, C8orf89, ZFHX4-AS1, MIR2052, MIR5681A, MIR5681B, RDH10, SBSPON, LY96, STAU2, HNF4G, LOC392232, MIR2052HG, PI15, GDAP1, TMEM70, UBE2W, JPH1, PEX2, RPL7, TCEB1, TERF1, ZFHX4, CRISPLD1, KCNB2) 0.384090341657817 25 0.105333707805242 1.17882669332343 1878 0.760130717666237 4 2 2 -6.82520042396165 LTS-040 chr8 79073390 79510544 437155 * PKIA NA 0 NA 1.529 1 NA NA NA NA NA LTS-040 chr8 79510545 79717789 207245 * c(LOC101241902, IL7, ZC2HC1A, PKIA) NA 0 NA 1.50063014084022 187 0.310096194924054 6 NA NA -5.76763626903639 LTS-040 chr8 80523059 82627187 2104129 * c(MIR5708, STMN2, FABP4, FABP5, HEY1, MRPS28, SLC10A5, IMPA1, PMP2, PAG1, ZNF704, FABP9, FABP12, ZBTB10, TPD52, ZFAND1) 0.250560187929067 15 0.059460511105711 1.90995430735974 1291 0.486669432660714 9 7 2 -6.89267636697513 LTS-040 chr8 82627188 86529337 3902150 * c(RALYL, E2F5, CA13, C8orf59, SNX16, CA1, CA2, CA3, ZFAND1, LRRCC1, CHMP4C) 0.32219128316085 4 0.0594866931898779 1.36290211216334 677 0.369815728332075 5 4 1 -6.98153097371409 LTS-040 chr8 87060578 87899945 839368 * c(WWP1, SLC7A13, CNBD1, ATP6V0D2, RMDN1, CNGB3, PSKH2, CPNE3) 0.472167431955486 6 0.0423162695268223 2.05380156296605 673 0.487577849035615 8 4 4 -7.38450606900516 LTS-040 chr8 87899946 87917307 17362 * CNBD1 NA 0 NA 3.065 1 NA NA NA NA NA LTS-040 chr8 87917308 89340088 1422781 * c(DCAF4L2, CNBD1, MMP16) 0.39795764409294 7 0.0541910201663215 2.84360883026405 413 0.841234267139363 13 8 5 -6.74105870165837 LTS-040 chr8 89340089 89340162 74 * character(0) 0.455 1 NA 1.105 1 NA NA NA NA NA LTS-040 chr8 89340163 94146338 4806176 * c(C8orf88, LRRC69, MIR4661, LINC00534, SLC26A7, DECR1, TMEM64, TRIQK, C8orf87, FLJ46284, NBN, OTUD6B, TMEM55A, NECAB1, OSGIN2, CALB1, RUNX1T1, RIPK2) 0.367720086816036 26 0.0389882822633436 1.51764079368507 1456 0.419273200684296 6 4 2 -6.76133747747605 LTS-040 chr8 94146339 99560449 5414111 * c(LOC100288748, MIR3150A, LOC100500773, MIR3150B, MIR378D2, C8orf37-AS1, FSBP, CDH17, RIDA, CPQ, POP1, FAM92A1, NDUFAF6, C8orf37, ERICH5, RAD54B, KIAA1429, GEM, SNORA72, DPY19L4, KCNS2, C8orf87, RBM12B, GDF6, MATN2, MTERF3, PDP1, ESRP1, LAPTM4B, RBM12B-AS1, INTS8, RPL30, LINC01298, SDC2, LINC00535, STK3, UQCRB, PLEKHF2, NIPAL2, TSPYL5, TMEM67, CCNE2, MTDH, TP53INP1, PTDSS1) 0.254515335211257 64 0.0770290542484633 1.90582034001282 3407 0.522724511856019 7 6 1 -6.90988924686693 LTS-040 chr8 99560450 99591849 31400 * STK3 NA 0 NA 0.927 1 NA NA NA NA NA LTS-040 chr8 99591850 104081906 4490057 * c(MIR875, MIR4471, MIR5680, OSR2, COX6C, ANKRD46, VPS13B, SNX31, RNF19A, RGS22, PABPC1, FBXO43, FLJ42969, ODF1, RRM2B, ZNF706, UBR5, AZIN1, ATP6V1C1, POLR2K, SPAG1, STK3, MIR599, KLF10, YWHAZ, GRHL2, NACAP1, NCALD) 0.342923107366866 26 0.051600730465909 1.44649789384577 2305 0.350487475577875 6 4 2 -7.06424960393734 LTS-040 chr8 104081907 110975929 6894023 * c(MIR3151, BAALC-AS1, CTHRC1, ABRA, BAALC-AS2, TMEM74, DPYS, ZFPM2, DCAF13, ANGPT1, LRP12, RSPO2, EIF3E, ATP6V1C1, OXR1, SYBU, ENY2, TRHR, BAALC, SLC25A32, DCSTAMP, FZD6, NUDCD1, EBAG9, PKHD1L1, EMC2, RIMS2) 0.315516562725849 59 0.104294470827732 1.58619150765189 2699 2.83712838030059 7 5 2 -6.75326420351175 LTS-040 chr8 110975930 114629161 3653232 * c(MIR2053, CSMD3, KCNV1) 0.238887683245033 9 0.0913310522829509 2.24877807859482 544 1.0695189898744 10 8 2 -6.74521722971409 LTS-040 chr8 116420730 120584482 4163753 * c(MIR3610, LINC00536, COLEC10, MAL2, SLC30A8, EXT1, SAMD12, AARD, NOV, TNFRSF11B, ENPP2, SAMD12-AS1, RAD21, RAD21-AS1, TRPS1, UTP23, EIF3H, MED30) 0.344599138130754 30 0.081344195619107 1.53845912940601 1258 2.43893018909214 7 5 2 -6.75782017748996 LTS-040 chr8 120584483 128100425 7515943 * c(LINC00861, FAM83A-AS1, ZHX1-C8orf76, MIR4663, PCAT1, TRIB1, RNF139, ZHX1, FBXO32, ZNF572, TMEM65, LINC00964, FAM84B, FAM91A1, ZHX2, MTBP, NSMCE2, MRPL13, ATAD2, HAS2, ANXA13, KLHL38, FER1L6-AS1, NDUFB9, ENPP2, TRMT12, WDYHV1, HAS2-AS1, DEPTOR, FER1L6, SNTB1, SQLE, TAF2, COL14A1, DSCC1, DERL1, TATDN1, C8orf76, FAM83A, TBC1D31, MTSS1, KIAA0196) 0.366670782809278 72 0.104045899006912 1.3652493011377 3504 0.366746927823103 5 3 2 -6.84746713501521 LTS-040 chr8 128100426 128100561 136 * character(0) NA 0 NA 1.939 1 NA NA NA NA NA LTS-040 chr8 128100562 135817198 7716637 * c(MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, MIR5194, HHLA1, NDRG1, ADCY8, TMEM71, EFR3A, LRRC6, ASAP1-IT1, KCNQ3, MIR30B, MIR30D, MYC, ASAP1, PHF20L1, FAM49B, POU5F1B, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, SLA, TG, CASC8, LINC00977, OC90, WISP1, HPYR1) 0.338382745482168 98 0.0828641235442415 1.48728120004223 2613 0.418286798673964 6 4 2 -6.91414591959492 LTS-040 chr8 135817199 136246458 429260 * LINC01591 NA 0 NA 1.68 1 NA NA NA NA NA LTS-040 chr8 136246459 140945605 4699147 * c(KHDRBS3, COL22A1, LINC01591, FAM135B, KCNK9, TRAPPC9) 0.340840608485829 26 0.037069601894482 1.6717419433022 782 0.395134380881305 7 5 2 -6.83903339992669 LTS-040 chr8 140945606 141461286 515681 * TRAPPC9 0.281580924290481 2 0.119501046020527 1.41019376770372 116 0.308767744210867 5 4 1 -6.73484167760004 LTS-040 chr8 141461287 141568480 107194 * c(AGO2, CHRAC1, TRAPPC9) 0.402 1 NA 1.36782622525363 153 0.385012645153513 5 5 0 -5.76443570759398 LTS-040 chr8 141568481 142367014 798534 * c(DENND3, AGO2, GPR20, SLC45A4, PTK2, LINC01300) 0.390388120310489 23 0.0335887121073087 1.33161092712931 772 0.265136735348033 5 3 2 -6.97802644628743 LTS-040 chr8 142367015 142367018 4 * GPR20 NA 0 NA 1.558 1 NA NA NA NA NA LTS-040 chr8 142367019 144163997 1796979 * c(CDC42P3, LOC100133669, LOC100288181, MIR4472-1, PTP4A3, LYPD2, CYP11B1, CYP11B2, TSNARE1, ARC, GML, GPR20, C8orf31, MROH5, LY6E, THEM6, LY6K, SLURP1, ADGRB1, LINC00051, LYNX1, PSCA, LY6D, JRK) 0.361502102847683 24 0.0911375771623017 1.50655560295842 1289 0.472222786457494 6 4 2 -6.74955148308535 LTS-040 chr8 144163998 144239319 75322 * character(0) NA 0 NA 1.152 1 NA NA NA NA NA LTS-040 chr8 144239320 146280802 2041483 * c(MIR937, MIR939, FAM83H-AS1, CCDC166, MIR1234, MIR4664, MFSD3, RHPN1, TOP1MT, CYC1, EEF1D, ADCK5, MAPK15, PUF60, ZC3H3, BOP1, SCRIB, FBXL6, OPLAH, GLI4, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MAFA, LY6H, C8orf82, LRRC24, TONSL, CYHR1, VPS28, HGH1, PLEC, EXOSC4, SLC39A4, ZNF250, RPL8, MROH6, NA NA NA NA NA NA NA NA NA LTS-040 SCX, PYCRL, C8orf33, MIR661, TSTA3, MROH1, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, MAF1, PARP10, TIGD5, PPP1R16A, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.374491932145978 142 0.0779712570847456 1.38882140315492 5915 0.309030069212285 5 3 2 -6.86890324855123 LTS-040 NA NA NA NA LTS-040 chr8 146280803 146280905 103 * C8orf33 NA 0 NA 0.973305017686224 3 0.121243556529821 3 NA NA -5.76441033532594 LTS-040 chr9 14732 14764 33 * WASH1 0.2 1 NA 3.359 1 NA NA NA NA NA LTS-040 chr9 14765 8528310 8513546 * c(WASH1, MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, FAM138C, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.33407772625057 74 0.0736361719541873 0.897068408023209 4185 0.239881408707357 3 2 1 -7.70656779784683 LTS-040 chr9 8528311 8528371 61 * PTPRD NA 0 NA 1.207 1 NA NA NA NA NA LTS-040 chr9 8528372 14617728 6089357 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.307860831027156 18 0.0914105155490394 1.03126962945659 724 0.34307085631056 3 2 1 -7.28028430774756 LTS-040 chr9 14617729 18474066 3856338 * c(C9orf92, PSIP1, TTC39B, FREM1, CCDC171, ZDHHC21, LOC389705, BNC2, CNTLN, SH3GL2, SNAPC3, CER1) 0.319413075314131 19 0.141406158827634 0.906856223186099 1406 0.226774513430373 3 2 1 -7.14616423211112 LTS-040 chr9 18474067 18474124 58 * ADAMTSL1 NA 0 NA 0.568 1 NA NA NA NA NA LTS-040 chr9 18474125 19451999 977875 * c(MIR3152, RRAGA, PLIN2, SAXO1, ACER2, HAUS6, DENND4C, RPS6, SCARNA8, ADAMTSL1) 0.259741245823204 34 0.077347791997679 0.744158697699115 1006 0.205776406035848 2 2 0 -6.78656433530682 LTS-040 chr9 19452000 19515847 63848 * c(SLC24A2, ACER2) NA 0 NA 1.362 1 NA NA NA NA NA LTS-040 chr9 19515848 43861081 24345234 * c(CDKN2B-AS1, SNORD121A, MIR876, MIR873, TOPORS-AS1, IZUMO3, GNE, FAM95C, LOC100506422, EBLN3P, MIR4667, MIR4473, MIR4540, MIR4475, MIR4474, MIR4476, SNORD121B, TOPORS, SIGMAR1, CDKN2A, CDKN2B, CREB3, UNC13B, CCL27, PTENP1, DCTN3, CLTA, CNTFR, TAF1L, ARID3C, RPP25L, C9orf131, RNF38, GLIPR2, LINC00032, LINGO2, FAM201A, TRMT10B, LINC00961, ATP8B5P, ELAVL2, C9orf72, FAM219A, CCDC107, FANCG, ALDH1B1, FRMPD1, NA NA NA NA NA NA NA NA NA LTS-040 PHF24, DDX58, ANKRD18A, SLC24A2, DNAJB5, DCAF12, GALT, FAM205A, ZNF658, SPAG8, FBXO10, B4GALT1, DNAI1, SIT1, SPINK4, LOC286297, TUSC1, ANXA2P2, STOML2, NUDT2, DNAJA1, IFNE, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, KIF24, IGFBPL1, IL11RA, AQP3, AQP7, ENHO, FAM205BP, SPATA31A6, GLIDR, FAM221B, OR13J1, HACD4, LINC01242, TMEM215, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TOMM5, FAM74A1, ZNF658B, MIR31, CNTFR-AS1, MLLT3, LINC01239, SUGT1P1, AQP7P3, ANKRD18B, MTAP, NDUFB6, NFX1, ACO1, NPR2, PAX5, EXOSC3, CDKN2A-AS1, UBAP1, CHMP5, TMEM8B, EQTN, APTX, FOCAD, UBE2R2, SMU1, MIR31HG, UBAP2, KLHL9, PRSS3, OR2S2, IFNK, BAG1, MIR491, KIAA1161, GBA2, RMRP, CCL19, CCL21, DMRTA1, NA, NA, LOC642929, LINC01189, POLR1E, SHB, HRCT1, LRRC19, NOL6, NA, FGF7P3, MSMP, TEK, TESK1, TLN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TPM2, SPATA31A3, FAM74A3, CNTNAP3B, FAM166B, VCP, CA9, DCAF10, MOB3B, CAAP1, CNTNAP3, IFT74, FAM214B, ZCCHC7, RECK, HINT2, C9orf24, PIGO, ARHGEF39, CCIN, SLC25A51, LINC00950, PLAA, GRHPR, CD72, RGP1, MELK, RUSC2, ZBTB5) 0.345695110406357 272 0.0720089166602031 0.921562569255813 10960 0.265556014223462 3 2 1 -7.66722413485733 LTS-040 NA NA NA NA LTS-040 chr9 43861082 44175697 314616 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.904782994150462 8 0.318512054044158 3 NA NA -5.77627883626681 LTS-040 chr9 65602571 66457127 854557 * LOC286297 0.482 1 NA 0.958736332294779 3 0.23693247983339 3 3 0 -5.76883723679892 LTS-040 chr9 66457128 68427877 1970750 * c(FAM27B, LOC286297, AQP7P1, PTGER4P2-CDK2AP2P2, FRG1JP) 0.35779988613451 19 0.0636499932240916 0.928727101144142 54 0.248720943261823 3 2 1 -6.95471620206495 LTS-040 chr9 68427878 68433537 5660 * FRG1JP 0.193 1 NA 0.81211611437888 5 0.125292856939253 2 2 0 -5.76474143858391 LTS-040 chr9 68433538 117074810 48641273 * c(SNORA84, LOC100128076, LOC100128361, FAM225B, LINC00476, UNQ6494, LOC100129316, LOC100132077, FRG1HP, LOC100132781, LOC100133920, LINC00092, VPS13A-AS1, MIR2278, MIR548Q, MIR3074, MIR4291, MIR3153, MIR4290, MIR3134, MIR4289, CCDC180, LOC100499484, MIR3910-1, MIR3910-2, GAS1RR, MAMDC2-AS1, SMC5-AS1, LOC100507346, MSANTD3-TMEFF1, MIR4668, MIR4670, BANCR, NAMA, SEMA4D, ANP32B, SPTLC1, SMC2, ACTL7B, ACTL7A, GADD45G, SPIN1, NA NA NA NA NA NA NA NA NA LTS-040 SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, FAM122A, CKS2, GRIN3A, TMC1, COL15A1, SLC31A1, SLC31A2, RNF183, CARNMT1, C9orf57, C9orf85, C9orf135, PTPDC1, ANKRD19P, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, TRPM6, CTSL, CTSV, CTSLP8, CYLC2, NXNL2, RASEF, MIRLET7DHG, FAM120AOS, LINC00475, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, PRUNE2, DAPK1, TMEM252, ZNF883, ZNF169, ECM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ABCA1, LPAR1, S1PR3, AAED1, ZNF367, ANKS6, SUSD3, ALAD, ALDH1A1, FANCC, FBP1, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, SMC5, FAM120A, VPS13A, AGTPBP1, BICD2, FKBP15, KIAA0368, TDRD7, SLC44A1, CDK20, TMEM2, TMEM245, FRRS1L, FXN, CDC26, TXNDC8, MAMDC2, FRMD3, C9orf43, AMBP, NIPSNAP3A, GAS1, OR2K2, GCNT1, OSTF1, INVS, GNAQ, GNG10, C9orf47, SPATA31E1, LOC286238, FAM225A, LOC286359, OR13C9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 OR13D1, NA, MIR4290HG, FOXD4L3, PSAT1, UBQLN1, ANXA1, HNRNPK, APBA1, HSD17B3, IARS, GAS2L1P2, LINC01501, SPATA31D5P, MURC, PTAR1, ERCC6L2, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, OR13C2, C9orf170, CENPP, C9orf152, SNX30, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR204, MIR23B, MIR32, MIR7-1, IDNK, LOC440173, LOC440896, SPATA31C1, LOC441454, LOC441455, NUTM2G, STX17-AS1, FOXB2, C9orf129, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PALM2-AKAP2, MUSK, NCBP1, NFIL3, NINJ1, NTRK2, ROR2, LOC494127, C9orf135-AS1, OMD, OGN, PCA3, ABHD17B, PCSK5, GOLM1, TRMO, PGM5, PHF2, SHC3, POLE3, NANS, MRPL50, EPB41L4B, NUTM2F, DIRAS2, ASPN, BSPRY, DNAJC25, TEX10, PLPPR1, AUH, FAM206A, NMRK1, STX17, NOL8, C9orf40, TMEM38B, DNAJC25-GNG10, RFK, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, KIF27, PRKACG, BARX1, RNF20, BAAT, PGM5-AS1, PTCH1, LOC100499484-C9ORF174, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PTPN3, SLC46A2, INIP, ZNF462, RAD23B, PGM5P2, RGS3, NAA35, RORB, MIR455, SLC28A3, FRG1JP, CBWD6, SUSD1, SPATA31C2, IPPK, WNK2, LRRC37A5P, RPSAP9, FOXD4L6, FOXD4L5, SYK, KLF9, TAL2, TGFBR1, TLE1, TLE4, TMOD1, ANKRD20A4, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, ZFAND5, SECISBP2, ZCCHC6, GALNT12, SVEP1, RMI1, TRPM3, NR4A3, GKAP1, ISCA1, HDHD3, ZNF484, FSD1L, PIP5K1B, CEP78, HSDL2, C9orf64, CARD19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MFSD14C, TMEM246, MFSD14B, C9orf3, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, FBP2, FGD3, PRPF4, MSANTD3, KLF4, FAM189A2, TJP2, GABBR2, GDA, GNA14, TRIM14, PTBP3) 0.230414240520216 431 0.0738626753824619 0.789049406718444 26080 0.733650505063298 2 2 0 -6.76240041668068 LTS-040 NA NA NA NA LTS-040 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.268 1 NA NA NA NA NA LTS-040 chr9 117085363 117089956 4594 * ORM1 0.23626043203366 4 0.0597906068431043 0.253609631398928 45 0.263834710653194 2 2 0 -6.79575536425578 LTS-040 chr9 117089957 117092172 2216 * c(ORM1, ORM2) NA 0 NA 0.848 1 NA NA NA NA NA LTS-040 chr9 117092173 140730118 23637946 * c(SNORA70C, ASTN2-AS1, LOC100128593, LOC100129034, STPG3-AS1, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, LOC100288842, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3621, MIR3689A, MIR3911, MIR3689B, LOC100505478, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR4478, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, NA NA NA NA NA NA NA NA NA LTS-040 CDK9, LAMC3, TUBB4B, UBAC1, OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, ZBTB6, NEK6, SDCCAG3, NOXA1, USP20, SLC27A4, CNTRL, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, ZMYND19, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DBH-AS1, ASB6, SLC34A3, DAB2IP, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, OR1Q1, TTLL11, TTC16, BRINP1, DBH, STKLD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 OLFML2A, QSOX2, SARDH, DNM1, TOR1A, MEGF9, ABCA2, ENDOG, ENG, AK1, TMEM268, NAIF1, STOM, FCN1, FCN2, DOLK, TRIM32, FNBP1, SETX, ZBTB43, PMPCA, ASTN2, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, WHRN, NELFB, NSMF, GPSM1, DKFZP434A062, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, LINC00094, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, NDOR1, GLE1, TOR1B, TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, LCN12, C9orf142, TPRN, FAM78A, RAPGEF1, NTMT1, GRIN1, PHPT1, GSN, ANAPC2, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, TNC, ADGRD2, QRFP, OR1J1, OR1B1, GLT6D1, SWI5, C9orf50, PNPLA7, CYSRT1, ENTPD8, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, LRRC26, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TMEM8C, OR1L6, OR5C1, OR1K1, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, FAM166A, SOHLH1, ZBTB34, MIR126, MIR147A, MIR181A2, MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, STPG3, NRARP, ASS1, NDUFA8, NOTCH1, ODF2, ORM1, ORM2, PAEP, DEC1, PAPPA, PDCL, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, RAB14, C9orf78, FBXW5, RC3H2, TBC1D13, TOR4A, EXD3, PTPA, STRBP, PPP6C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RABL6, CDK5RAP2, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, DOLPP1, PTGDS, PTGS1, KCNT1, ZBTB26, DENND1A, GPR107, LINC00474, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NRON, CARD9, SET, FAM163B, EHMT1-IT1, RNF224, DDX31, FAM129B, MRPL41, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TLR4, TRAF1, TRAF2, TSC1, C5, TTF1, RNF208, DNLZ, C8G, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 VAV2, ZNF79, C9orf16, MAPKAP1, EHMT1, PTGES2, BRD3, NUP214, LHX3, AKNA, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, ARRDC1-AS1, SSNA1, EDF1, DPM2, KYAT1, FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, MRRF, RBM18, ARRDC1, DPH7, GTF3C5, GTF3C4, LHX2, TMEM203, TNFSF8, MED27, PTGES, ENTPD2, ATP6V1G1, RALGPS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ADAMTSL2, PPP1R26, SEC16A, TNFSF15) 0.238157146772037 528 0.0634545838563296 0.794603978028985 27458 0.420044718248639 2 2 0 -6.76425588824152 LTS-040 NA NA NA NA LTS-040 chr9 140730119 140963160 233042 * c(MIR602, CACNA1B, EHMT1) 0.303210692370616 3 0.243428291973906 0.940039824697184 205 0.268316563840872 3 2 1 -6.81489607220601 LTS-040 chr9 140963161 141071759 108599 * c(TUBBP5, CACNA1B) NA 0 NA 0.905224932861183 149 0.19301257796119 3 NA NA -5.77543226614087 LTS-040 chr10 94832 94870 39 * TUBB8 0.351 1 NA 0.734 1 NA NA NA NA NA LTS-040 chr10 94871 13206233 13111363 * c(LINC00704, MIR3155A, PITRM1-AS1, LINC00707, MIR4480, MIR3155B, MIR5699, OPTN, NET1, ADARB2, PITRM1, CELF2, ZMYND11, AKR1C4, NUDT5, UCN3, KLF6, AKR1C1, AKR1C2, SFTA1P, PROSER2-AS1, WDR37, KIN, DIP2C, LARP4B, GTPBP4, LINC00710, PROSER2, UPF2, GATA3, GDI2, LINC00700, NA, LINC00705, AKR1C8P, IDI1, TUBB8, IL2RA, IL15RA, ITIH2, AKR1C6P, LINC00200, LINC00701, LOC399715, GATA3-AS1, PRR26, PRKCQ-AS1, CELF2-AS2, NA NA NA NA NA NA NA NA NA LTS-040 ATP5C1, CALML5, PFKFB3, PFKP, ANKRD16, FAM208B, SEC61A2, MCM10, DHTKD1, IDI2-AS1, PRKCQ, CAMK1D, SFMBT2, ADARB2-AS1, ECHDC3, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, CCDC3, TAF3, FBXO18, RBM17, AKR1C3, CDC123, IDI2, USP6NL) 0.431116699851043 176 0.0584915034344816 1.01792547513207 5886 0.276053609801371 3 2 1 -7.13674487737124 LTS-040 NA NA NA NA LTS-040 chr10 13206234 13230934 24701 * MCM10 0.371 1 NA 0.954120194419841 43 0.175608541681225 3 3 0 -5.76475658333834 LTS-040 chr10 13230935 13852967 622033 * c(UCMA, BEND7, SEPHS1, PHYH, MCM10, FRMD4A, PRPF18) 0.286036408604263 9 0.197593648683352 1.03378428200932 635 0.281713986805602 4 3 1 -6.84370061500541 LTS-040 chr10 13852968 14425185 572218 * FRMD4A 0.431 1 NA 0.985188741497914 41 0.201190890425595 3 3 0 -5.76463886181907 LTS-040 chr10 14425186 17813375 3388190 * c(ST8SIA6-AS1, PPIAP30, MIR1265, RPP38, TRDMT1, C10orf111, FAM171A1, ST8SIA6, C1QL3, ACBD7, CDNF, HSPA14, OLAH, FRMD4A, RSU1, DCLRE1C, MEIG1, TMEM236, VIM, SUV39H2, FAM188A, STAM, CUBN, FAM107B, ITGA8, HACD1, PTER, NMT2) 0.421035339124442 37 0.0848331873129241 0.984545161095227 2203 0.29820899927618 3 2 1 -6.80376793779191 LTS-040 chr10 17813376 17953152 139777 * c(MRC1, NA, TMEM236) NA 0 NA 0.370083271453855 65 0.191116911963493 0 NA NA -5.76697454590798 LTS-040 chr10 17953153 18060259 107107 * c(MRC1, NA, TMEM236) NA 0 NA 0.863 1 NA NA NA NA NA LTS-040 chr10 18060260 29169241 11108982 * c(ABI1, NEBL-AS1, GPR158-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, LINC00837, COMMD3-BMI1, MIR4675, MIR5586, NEBL, YME1L1, MPP7, ENKUR, ARMC3, OTUD1, WAC-AS1, SLC39A12, NSUN6, ARL5B, ANKRD26, MSRB2, RAB18, COMMD3, PDSS1, PTF1A, C10orf67, GAD2, BAMBI, MKX, EBLN1, PTCHD3, C10orf113, SKIDA1, LINC00202-1, LRRC37A6P, CASC10, MRC1, WAC, PIP4K2A, MYO3A, APBB1IP, ARMC4, KIAA1217, PRTFDC1, NA, GPR158, NA NA NA NA NA NA NA NA NA LTS-040 ARHGAP21, DNAJC1, LINC00264, BMI1, TMEM236, MIR603, LINC00202-2, CACNB2, THNSL1, MLLT10, PLXDC2, MASTL, ACBD5, SPAG6) 0.405543488956905 85 0.116987543927436 1.05402818515232 5157 0.354959033806369 3 2 1 -7.00882803887619 LTS-040 NA NA NA NA LTS-040 chr10 29169242 38740382 9571141 * c(MIR938, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LYZL2, MAP3K8, CREM, HSD17B7P2, ZNF25, GJD4, CCNY, ZNF438, ZEB1-AS1, NA, SEPT7P9, ITGB1, KIF5B, PTCHD3P1, LINC00999, MTPAP, PARD3, ZNF248, KIAA1462, SVIL, MIR604, ZEB1, ZNF33A, ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, NRP1, ANKRD30A, ARHGAP12) 0.420911515646048 92 0.0773773739724133 1.00427577641393 3244 0.531893875374022 3 2 1 -6.82863244603272 LTS-040 chr10 42379906 46281287 3901382 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, FAM21C, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, LINC00619, LOC441666, FXYD4, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, RASSF4, LINC00839, ZFAND4, BMS1) 0.413637225699045 59 0.0416591327691087 1.02583519513436 1796 0.261744648210659 3 2 1 -6.96333385429709 LTS-040 chr10 46281288 46550852 269565 * c(AGAP4, FAM21C, PTPN20, NA) NA 0 NA 1.662 1 NA NA NA NA NA LTS-040 chr10 46550853 47701299 1150447 * c(PTPN20, GLUD1P7, FAM35BP, FAM35DP, NPY4R, LINC00842, NA, NA, HNRNPA1P33, SYT15, GPRIN2) 0.390015951087334 37 0.0767976358807801 1.69663351309525 308 0.499636535635523 6 4 2 -6.78480586183352 LTS-040 chr10 47701300 47755981 54682 * c(NA, PTPN20, GLUD1P7, NA, NA) NA 0 NA 1.1 1 NA NA NA NA NA LTS-040 chr10 47755982 48438594 682613 * c(ZNF488, CTSLP2, NA, PTPN20, GDF2, GDF10, GLUD1P7, NA, RBP3, NA, NA) 0.360824570181687 3 0.0891422084835985 1.16744755046809 306 0.432905682111738 4 3 1 -6.80174700134699 LTS-040 chr10 48438595 48438599 5 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.866 1 NA NA NA NA NA LTS-040 chr10 48438600 48739488 300889 * c(PTPN20, GDF10, GLUD1P7, NA, NA, NA) NA 0 NA 0.509780534503249 39 0.401884432599711 1 NA NA -5.7838682367908 LTS-040 chr10 49364631 55913037 6548407 * c(TIMM23, MIR4294, FAM170B-AS1, PRKG1-AS1, NA, CHAT, C10orf71, FRMPD2, FAM170B, C10orf128, VSTM4, ERCC6, DKK1, CSTF2T, SGMS1, C10orf53, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, LRRC18, NA, OGDHL, PRKG1, MAPK8, ASAH2, WDFY4, ARHGAP22, DRGX, PCDH15, AGAP7P, ASAH2B, SLC18A3, MIR605, NA, PARGP1, FRMPD2B, NCOA4, PARG) 0.393357931987398 111 0.0878971925713015 1.04955389031962 3207 0.310418112167881 3 2 1 -6.9185792243683 LTS-040 chr10 55913038 55943202 30165 * PCDH15 NA 0 NA 1.353 1 NA NA NA NA NA LTS-040 chr10 55943203 63212808 7269606 * c(MTRNR2L5, MIR3924, MRLN, ZWINT, TMEM26, SLC16A9, FAM13C, IPMK, LINC01553, ANK3, CISD1, PCDH15, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, PHYHIPL, CDK1, RHOBTB1) 0.447317848128144 48 0.085275707943401 1.23293798821355 1951 0.297454586885433 4 2 2 -6.86760405125525 LTS-040 chr10 63212809 63212923 115 * TMEM26 NA 0 NA 0.881 1 NA NA NA NA NA LTS-040 chr10 63212924 64973917 1760994 * c(MIR548AV, EGR2, C10orf107, TMEM26, RTKN2, JMJD1C, ZNF365, NRBF2, ARID5B, ADO) 0.454422142925935 5 0.0162542302186231 1.11223755958946 1023 0.214134483410985 4 2 2 -8.26691395355123 LTS-040 chr10 64973918 64974016 99 * JMJD1C NA 0 NA 1.243 1 NA NA NA NA NA LTS-040 chr10 64974017 70552103 5578087 * c(MIR1296, DNA2, ATOH7, REEP3, JMJD1C, SIRT1, HERC4, CTNNA3, ANXA2P3, HNRNPH3, LRRTM3, RUFY2, CCAR1, DNAJC12, PBLD, SNORD98, TET1, SLC25A16, MYPN, JMJD1C-AS1) 0.392935627843812 36 0.0506892180389166 1.42241761113436 1817 0.464667309958861 5 3 2 -6.831306627179 LTS-040 chr10 70552104 70641679 89576 * STOX1 NA 0 NA 0.937 1 NA NA NA NA NA LTS-040 chr10 70641680 70742771 101092 * c(STOX1, DDX50, DDX21) 0.481 1 NA 1.01754324830221 231 0.203400006810626 3 3 0 -5.76647180211414 LTS-040 chr10 70742772 72648483 1905712 * c(COL13A1, ADAMTS14, EIF4EBP2, C10orf35, TYSND1, TBATA, TSPAN15, KIF1BP, PALD1, HK1, NODAL, NEUROG3, PCBD1, PPA1, LRRC20, H2AFY2, PRF1, SRGN, SAR1A, NPFFR1, SUPV3L1, TACR2, HKDC1, AIFM2, SGPL1, DDX21, VPS26A) 0.457905721383272 32 0.0281257974797332 1.1788158992097 2329 0.293900659558269 4 2 2 -7.43191195541858 LTS-040 chr10 72648484 90965926 18317443 * c(DLG5-AS1, ZNF503-AS2, LINC00856, KLLN, BMS1P21, MIR1256, FAS-AS1, GRID1-AS1, MIR4679-1, MIR4679-2, MIR4676, MIR4678, PPIF, MICU1, NRG3, ADIRF, POLR3A, LDB3, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANKRD22, AGAP11, ANAPC16, ADK, SAMD8, LIPJ, CFL1P1, DYDC1, EIF5AL1, USP54, FUT11, OIT3, LINC00858, TMEM254-AS1, PLAC9, ZCCHC24, UNC5B, ZSWIM8, WAPL, DNAJC9, KAT6B, ZNF503-AS1, NUDT13, LRIT1, AP3M1, GHITM, GLUD1, NA NA NA NA NA NA NA NA NA LTS-040 GLUD1P3, ZMIZ1-AS1, GRID1, ANXA7, ANXA11, FAM149B1, DUPD1, LIPM, LRIT2, FAS, KCNMA1, SH2D4B, C10orf99, C10orf105, C10orf55, LINC00595, DNAJC9-AS1, MAT1A, LINC00857, LINC00863, MIR346, P4HA1, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, CCSER2, FAM35A, DDIT4, DNAJB12, SLC29A3, PPP3CB, RNLS, PSAP, ZMIZ1, PTEN, STAMBPL1, MYOZ1, ACTA2, RGR, RPS24, CDH23, C10orf54, LOC642361, FAM25A, LIPK, LIPN, SFTPD, BEND3P3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SFTPA1, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, UNC5B-AS1, AGAP5, BMS1P4, SFTPA2, VCL, VDAC2, MMRN2, SYNPO2L, TMEM254, TSPAN14, CAMK2G, C10orf11, FAM213A, DYDC2, PLA2G12B, ZNF503, ATAD1, NDST2, MBL1P, LIPF, CH25H, MCU, PAPSS2, CDHR1, DLG5, OPN4, CHST3, MINPP1, SEC24C, SPOCK2) 0.39111403192643 208 0.0844693933298517 1.44213275467555 10014 0.353482949769764 5 3 2 -6.94390212279996 LTS-040 NA NA NA NA LTS-040 chr10 90965927 90973492 7566 * c(LIPA, CH25H) 0.455 1 NA 0.968896154031922 29 0.243647528669184 3 3 0 -5.764420216265 LTS-040 chr10 90973493 90975649 2157 * LIPA 0.395 1 NA 0.97293728578792 29 0.18829604743019 3 3 0 -5.76441208993943 LTS-040 chr10 90975650 94659864 3684215 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CPEB3, IFIT5, ANKRD1, FLJ37201, HHEX, HTR7, IDE, IFIT2, IFIT1, IFIT3, KIF11, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, EXOC6, MARCH5, PPP1R3C, LINC00865, TNKS2, PCGF5, BTAF1, KIF20B) 0.341530188191059 42 0.073718915573661 0.918642738224024 2558 0.29381019282252 3 2 1 -7.10560880455307 LTS-040 chr10 94659865 94660102 238 * EXOC6 NA 0 NA 1.603 1 NA NA NA NA NA LTS-040 chr10 94660103 94661445 1343 * EXOC6 0.306441277689545 4 0.0510514446416553 1.54930289990184 40 1.15715993509308 11 8 3 -6.73318650627033 LTS-040 chr10 94661446 118139369 23477924 * c(TLX1NB, MIR936, C10orf131, PLCE1-AS1, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR1307, MIR2110, MIR3157, MIR3158-1, MIR4295, MIR3158-2, SLIT1-AS1, RPARP-AS1, SH3PXD2A-AS1, ADD3-AS1, BORCS7-ASMT, ARHGAP19-SLIT1, MIR4680, MIR4483, MIR4482, MIR4685, MIR5692C2, ACTR1A, SMNDC1, NPM3, SORBS1, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, SORCS1, PIK3AP1, MORN4, ZFYVE27, FRA10AC1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, ADD3, ABCC2, NA NA NA NA NA NA NA NA NA LTS-040 COL17A1, COX15, CPN1, ACSM6, TRUB1, VTI1A, ADRA2A, ADRB1, CYP2C19, CYP2C8, CYP2C9, CYP2C18, CYP17A1, CYP26A1, NKX2-3, SLC35G1, CFAP58, DNTT, DUSP5, FGF8, NT5C2, PDCD11, SORCS3, PPRC1, RRP12, TBC1D12, DNMBP, FRAT2, CALHM1, DPCD, SEC31B, ATRNL1, TCTN3, C10orf12, ANKRD2, CNNM1, MYOF, PIPSL, GFRA1, PDCD4, R3HCC1L, POLL, GOT1, BLOC1S2, RBM20, PDCD4-AS1, BLNK, HABP2, HELLS, KCNIP2, TLX1, HPS1, FFAR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CYP26C1, VWA2, NHLRC2, CCDC172, CC2D2B, GUCY2GP, ABLIM1, LBX1-AS1, GOLGA7B, ARL3, C10orf62, MXI1, NDUFB8, NFKB2, NRAP, PAX2, EXOSC1, CALHM2, CUTC, PLCE1, PDE6C, SUFU, ACSL5, PGAM1, PITX3, EXOC6, CCNJ, CNNM2, WBP1L, CCDC186, CRTAC1, CEP55, CWF19L1, PI4K2A, HIF1AN, SLF2, TDRD1, PSD, C10orf2, TM9SF3, ENTPD7, AS3MT, MIR146B, GPAM, FAM160B1, SEMA4G, ALDH18A1, RBP4, AVPI1, HPSE2, SCD, MMS19, SFRP5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NOC3L, ZDHHC6, RPL13AP6, FBXW4, SLIT1, SNORA12, TAF5, MIR608, MIR609, TCF7L2, TECTB, TLL2, ENTPD1-AS1, RPEL1, WNT8B, XPNPEP1, CUEDC2, FBXL15, C10orf76, HPS6, MFSD13A, C10orf95, PLEKHS1, PDZD7, OBFC1, UBTD1, CFAP43, SHOC2, TRIM8, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, CASP7, PCGF6, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, AFAP1L2, PYROXD2, USMG5, ARHGAP19, ITPRIP, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 INA, PDLIM1, SMC3, NEURL1, LGI1, NOLC1, BBIP1, OPALIN, GSTO1, ENTPD1, SH3PXD2A, SLK, ZNF518A, DCLRE1A) 0.345432789372595 367 0.085338445109257 0.899158632779773 18991 0.244053551814452 3 2 1 -8.2880969259454 LTS-040 NA NA NA NA LTS-040 chr10 118139370 119308575 1169206 * c(MIR3663, VAX1, PDZD8, PNLIPRP3, C10orf82, EMX2OS, EMX2, HSPA12A, KCNK18, CCDC172, ENO4, PNLIP, PNLIPRP1, PNLIPRP2, SHTN1, SLC18A2) 0.330468314863214 13 0.0617476253046968 0.972786946518681 1169 0.225548578480978 4 3 1 -7.20466812482951 LTS-040 chr10 119308576 123843520 4534945 * c(MIR4682, MIR4681, TACC2, PRDX3, ATE1, SEC23IP, SFXN4, CACUL1, PLPP4, EMX2, FGFR2, RAB11FIP2, INPP5F, CASC2, WDR11-AS1, PRLHR, GRK5, NANOS1, NSMCE4A, WDR11, RGS10, FAM204A, SNORA19, TIAL1, MCMBP, EIF3A, BAG3) 0.351202339980348 27 0.113000794188269 0.875780515126828 2266 0.215008931890911 3 2 1 -7.47524886371594 LTS-040 chr10 123843521 123843526 6 * TACC2 NA 0 NA 1.078 1 NA NA NA NA NA LTS-040 chr10 123843527 134693137 10849611 * c(TEX36-AS1, MIR378C, MIR4297, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, GLRX3, DPYSL4, TACC2, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CTAGE7P, CLRN3, CPXM2, CTBP2, C10orf91, PWWP2B, DMBT1, DOCK1, FAM24B, FAM175B, EBF3, TCERG1L, EDRF1, JAKMIP3, STK32C, LOC283038, GPR26, HMX2, HMX3, ACADSB, INPP5A, DMBT1P1, ARMS2, TEX36, LINC00959, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, NA NA NA NA NA NA NA NA NA LTS-040 LINC01164, MGMT, MKI67, OAT, CUZD1, CHST15, ZRANB1, CFAP46, DHX32, PPP2R2D, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, BNIP3, UROS, C10orf88, LRRC27, ADAM12, NKX6-2, BUB3, FANK1, FAM53B) 0.331236179833833 181 0.0956152238148759 0.927906098282013 5770 0.271508643899408 3 2 1 -7.21814542101444 LTS-040 NA NA NA NA LTS-040 chr10 134693138 134694405 1268 * CFAP46 NA 0 NA 0.458 1 NA NA NA NA NA LTS-040 chr10 134694406 134756359 61954 * CFAP46 0.361170429598211 6 0.0477049962442789 0.492313145170243 171 0.159232030786783 1 1 0 -7.04546493001818 LTS-040 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.478 1 NA NA NA NA NA LTS-040 chr10 134884462 135160742 276281 * c(ADAM8, TUBGCP2, PRAP1, ZNF511, VENTX, CALY, MIR202, UTF1, ADGRA1, KNDC1) 0.32571992125466 38 0.072355162628749 0.936633806081691 799 0.243167041666921 4 3 1 -6.88083180744575 LTS-040 chr10 135160743 135160803 61 * PRAP1 NA 0 NA 0.648 1 NA NA NA NA NA LTS-040 chr10 135160804 135473026 312223 * c(MIR3944, PRAP1, CYP2E1, ECHS1, PAOX, FUOM, SPRNP1, FRG2B, SPRN, SCART1, MTG1, SYCE1) 0.397995608970818 24 0.0552168157279142 0.675833774563798 617 0.19599197885295 2 1 1 -6.98054997739215 LTS-040 chr10 135473027 135473116 90 * character(0) NA 0 NA 0.771 1 NA NA NA NA NA LTS-040 chr11 193025 193096 72 * SCGB1C1 0.479 1 NA 0.422 1 NA NA NA NA NA LTS-040 chr11 193097 587457 394361 * c(MIR210HG, IFITM3, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, SIRT3, LMNTD2, HRAS, ANO9, B4GALNT4, IFITM5, MIR210, BET1L, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, PGGHG, RASSF7, PTDSS2, IFITM1) 0.398271216780325 60 0.0716003897978848 0.768876719579414 1397 0.292695958077564 2 1 1 -6.8204451360441 LTS-040 chr11 587458 591265 3808 * PHRF1 NA 0 NA 0.542 1 NA NA NA NA NA LTS-040 chr11 591266 644328 53063 * c(DEAF1, DRD4, IRF7, CDHR5, PHRF1, SCT) 0.425092614125758 2 0.0410121933088197 0.648212571412972 348 0.140800760952039 2 1 1 -6.78837689671363 LTS-040 chr11 644329 1016869 372541 * c(DEAF1, AP2A2, LOC171391, CRACR2B, TMEM80, PDDC1, MUC6, CEND1, POLR2L, PIDD1, PNPLA2, RPLP2, SNORA52, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, CD151) 0.41930803352557 27 0.0466662393142826 0.797356536592068 1199 0.202043672408284 2 1 1 -6.74661158277111 LTS-040 chr11 1016870 1016890 21 * MUC6 0.065 1 NA 1.01051491285978 3 0.458925193613658 3 3 0 -5.76441018791529 LTS-040 chr11 1016891 1018483 1593 * MUC6 0.298776646274439 39 0.101793180282162 1.02195711144276 69 0.45507511722664 8 6 2 -6.73504582885459 LTS-040 chr11 1018484 1028379 9896 * MUC6 0.403 1 NA 0.790118591439011 89 0.157779782141778 2 2 0 -5.7644426604903 LTS-040 chr11 1028380 3663422 2635043 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, OR7E12P, KCNQ1OT1, OSBPL5, MRGPRE, ART5, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, MUC2, MUC6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, TSSC2, SNORA54, TH, TNNI2, TNNT3, NA NA NA NA NA NA NA NA NA LTS-040 TRPC2, INS-IGF2, PHLDA2, MUC5B, ZNF195, MOB2, CARS, SYT8, BRSK2, CD81) 0.37118942855653 159 0.0811128875912886 0.837781621166174 3415 0.208388777347472 2 1 1 -7.16691581117899 LTS-040 NA NA NA NA LTS-040 chr11 3663423 3681051 17629 * c(ART5, ART1) 0.361 1 NA 0.819804969332088 13 0.146179683950951 2 2 0 -5.76557717438318 LTS-040 chr11 3681052 5777005 2095954 * c(LOC100506082, MIR4687, TRIM22, TRIM6, OR52E2, OR52J3, OR51L1, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, UBQLNL, OR52A1, OR51F1, PGAP2, OR51B5, OR51V1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, OR52B6, OR56B1, OR52K1, OR52I1, OR51D1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, OR52H1, OR52N4, RHOG, OR51T1, OR51A4, OR51A2, ART1, TRIM6-TRIM34, NUP98, UBQLN3, NA NA NA NA NA NA NA NA NA LTS-040 TRIM34, TRIM68, MMP26, CHRNA10, RRM1, TRIM21, STIM1, OR51G1, OR51B4, OR51B2, OR51G2, OR51E2, TRIM5) 0.405141925408391 128 0.0642740919436219 0.825979491481467 2703 0.221347980526398 2 1 1 -6.87337204010862 LTS-040 NA NA NA NA LTS-040 chr11 5777006 5798826 21821 * c(TRIM22, TRIM5) NA 0 NA 1.457 1 NA NA NA NA NA LTS-040 chr11 5798827 5809746 10920 * c(TRIM22, OR52N5, OR52N1, TRIM5) 0.394803828634719 3 0.0527162214123888 1.39097729083732 41 0.410651650488319 8 5 3 -6.73898982489659 LTS-040 chr11 5809747 5809774 28 * c(TRIM22, OR52N1, TRIM5) NA 0 NA 1.017 1 NA NA NA NA NA LTS-040 chr11 5809775 17396772 11586998 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, MIR5691, MRVI1, TRIM22, SPON1, IPO7, TRIM3, OR7E14P, LYVE1, C11orf58, PRKCDBP, TPP1, OR5P2, OR5P3, CYP2R1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, COPB1, ADM, SYT9, PLEKHA7, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, EIF4G2, RRAS2, SWAP70, DENND5A, RRP8, ARFIP2, OR52B2, OR5E1P, OR10A3, TIMM10B, DKK3, AMPD3, RBMXL2, KRT8P41, SBF2-AS1, CSNK2A3, OR10A4, OLFML1, NA NA NA NA NA NA NA NA NA LTS-040 LOC283299, APBB1, HPX, NLRP10, NLRP14, OR52L1, OR2AG2, OR10A2, OVCH2, ILK, GALNT18, NCR3LG1, GVINP1, INSC, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, NUCB2, TMEM9B-AS1, RNF141, PDE3B, CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, MRPL17, LOC644656, RASSF10, STK33, SMPD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ST5, SNORA23, SNORA3B, TAF10, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, ZNF214, ZNF215, OR52N1, CALCA, RIC3, CALCB, SBF2, FAM160A2, FAR1, BTBD10, PPFIBP2, MICALCL, TRIM5, OR6A2, DCHS1, EIF3F, CCKBR, MICAL2, CTR9, TRIM66) 0.410585382121831 234 0.0651387084387996 0.790307690353024 10096 0.366742500111361 2 1 1 -6.77246871363443 LTS-040 NA NA NA NA LTS-040 chr11 17396773 17396862 90 * NCR3LG1 NA 0 NA 1.13 1 NA NA NA NA NA LTS-040 chr11 17396863 18042287 645425 * c(USH1C, SERGEF, OTOG, NCR3LG1, KCNC1, KCNJ11, MYOD1, ABCC8, TPH1) 0.404958338875171 14 0.0397249471814807 0.853089915103065 1197 0.273534371427383 3 2 1 -6.89588069107745 LTS-040 chr11 18042288 18042415 128 * TPH1 NA 0 NA 0.742 1 NA NA NA NA NA LTS-040 chr11 18042416 18720488 678073 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, GTF2H1, LDHA, LDHC, LOC494141, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101) 0.388153874881728 26 0.125302833168289 0.746801916932624 1100 0.256142737375083 2 1 1 -6.79877347611993 LTS-040 chr11 18720489 30928248 12207760 * c(LOC100126784, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, LINC00678, PRMT3, HTATIP2, MRGPRX2, DBX1, ARL14EP, MUC15, TMEM86A, SLC5A12, METTL15, ANO5, FANCF, FSHB, SVIP, MRGPRX1, GAS2, IGSF22, LUZP2, KCNA4, FIBIN, NAV2-AS4, NELL1, BDNF-AS, ZDHHC13, LIN7C, LGR4, SLC17A6, BDNF, ANO3, MIR610, MPPED2, E2F8, CSRP3, KIF18A, BBOX1, PTPN5, NAV2, CCDC34, SLC6A5) 0.387187208264139 111 0.102104270546741 0.837340961112735 3891 0.253505325647881 2 1 1 -7.3256689273424 LTS-040 chr11 30928249 30930476 2228 * DCDC5 NA 0 NA 0.75 1 NA NA NA NA NA LTS-040 chr11 30930477 47447816 16517340 * c(C11orf91, MIR670, MIR3160-2, MIR3160-1, DCDC5, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR3973, MIR4688, MIR1343, NR1H3, MIR5582, HIPK3, EIF3M, CHRM4, C11orf74, LARGE2, DNAJC24, CRY2, LDLRAD3, C11orf94, CSTF3, DDB2, IMMP1L, ELF5, EXT2, F2, ALKBH3, LOC221122, FJX1, KIAA1549L, ABTB2, PAMR1, FBXO3, EHF, ELP4, HARBI1, LINC00294, COMMD9, PACSIN3, CSTF3-AS1, DCDC1, CD82, DKFZp779M0652, C11orf96, ACCSL, NA NA NA NA NA NA NA NA NA LTS-040 ARHGAP1, HNRNPKP3, LMO2, LRP4, MIR129-2, CAPRIN1, MDK, DKFZp686K1684, MYBPC3, CCDC73, PAX6, APIP, HSD17B12, PHF21A, WT1-AS, ACP2, TRIM44, NAT10, SLC35C1, TCP11L1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, RAG1, RAG2, RCN1, ALX4, SLC1A2, SPI1, SNORD67, TRAF6, SEC14L1P1, WT1, PRRG4, C11orf49, ZNF408, QSER1, PRR5L, PDHX, ARFGAP2, ACCS, CAT, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, DEPDC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PEX16, MAPK8IP1, TP53I11, CD44, CD59, ATG13, CKAP5) 0.398371257792953 184 0.0868774200758209 0.794093699414638 9205 0.240782382754786 2 1 1 -6.83907585357914 LTS-040 NA NA NA NA LTS-040 chr11 47447817 47814280 366464 * c(CELF1, C1QTNF4, PTPMT1, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, KBTBD4, PSMC3, RAPSN, AGBL2) 0.337437049431867 22 0.123924219268116 0.731475515345339 776 0.178592455215388 2 1 1 -7.05226671162057 LTS-040 chr11 47814281 47826090 11810 * NUP160 0.404 1 NA 0.734639778404763 31 0.261389726744017 2 2 0 -5.76479756006176 LTS-040 chr11 47826091 48346419 520329 * c(OR4X2, OR4B1, NUP160, OR4S1, OR4X1, PTPRJ) 0.388340058894738 3 0.0275741424768447 0.746345124168578 393 0.19788947591335 3 2 1 -7.2827537153682 LTS-040 chr11 48346420 48346423 4 * character(0) 0.348 1 NA 1.949 1 NA NA NA NA NA LTS-040 chr11 48346424 48388717 42294 * c(OR4C3, OR4C45) 0.346675572151152 103 0.0639459098239254 1.30811721472367 184 0.596768171316955 4 3 1 -6.77179238953434 LTS-040 chr11 48388718 48388748 31 * character(0) NA 0 NA 0.779 1 NA NA NA NA NA LTS-040 chr11 48388749 51527703 3138955 * c(OR4C46, FOLH1, OR4C13, OR4C12, TRIM49B, OR4A47, LOC440040, LOC441601, TRIM64C, LOC646813, OR4A5) NA 0 NA 0.81764361912061 454 0.288148299597786 2 NA NA -5.81186759173436 LTS-040 chr11 55035776 55340582 304807 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) NA 0 NA 0.756919592858145 91 0.12072829867153 2 NA NA -5.77663672254428 LTS-040 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.103 1 NA NA NA NA NA LTS-040 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.0996810618479993 67 0.00383849670936271 0 NA NA -27.0271533206592 LTS-040 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.749 1 NA NA NA NA NA LTS-040 chr11 55432533 55541019 108487 * c(OR4C6, OR5D13) 0.436 1 NA 0.926889287167816 27 0.198023308651357 3 3 0 -5.76957527009981 LTS-040 chr11 55541020 56468021 927002 * c(OR5I1, OR8I2, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, TRIM51) 0.330858446519874 28 0.0917921795841249 0.877859539166664 844 0.305260238240429 3 2 1 -7.05830942783372 LTS-040 chr11 56468022 56468835 814 * c(OR8U8, OR9G9) 0.317127447227207 25 0.115822061801714 1.34806916793349 41 0.691788983405327 17 12 5 -6.73436084950561 LTS-040 chr11 56468836 56468883 48 * OR8U8 NA 0 NA 0.733 1 NA NA NA NA NA LTS-040 chr11 56468884 57004577 535694 * c(APLNR, OR5AK4P, LRRC55, OR9G4, OR5AK2, OR8U8) 0.373418229054486 8 0.0622022909545943 0.83283819687714 233 0.226594660464351 3 2 1 -6.94664935896902 LTS-040 chr11 57004578 57076820 72243 * c(APLNR, TNKS1BP1) 0.45 1 NA 0.795006363239812 63 0.303365234392123 2 2 0 -5.7645601219009 LTS-040 chr11 57076821 62401926 5325106 * c(MIR1908, MIR3162, TMX2-CTNND1, MIR4488, GLYAT, PRG3, SCGB1D2, SCGB1D1, CLP1, PTGDR2, RPLP0P2, CNTF, CTNND1, DDB1, EEF1G, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, VWCE, CYB561A3, PPP1R32, MS4A2, FEN1, ZP1, GANAB, DTX4, MS4A6E, FTH1, EML3, ZDHHC5, TKFC, DKFZP434K028, B3GAT3, TIMM10, NA NA NA NA NA NA NA NA NA LTS-040 GIF, PRPF19, SELENOH, LOC283194, LINC00301, SLC43A3, MS4A10, RTN4RL2, INCENP, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, LRRC10B, FADS1, FADS3, SCGB1D4, MIR130A, SCGB2A1, SCGB2A2, OR5B3, OSBP, P2RX3, MS4A13, TMX2, TMEM216, SLC15A3, MS4A4A, TMEM138, PGA5, MS4A12, MRPL16, SDHAF2, TMEM132A, VPS37C, PRG2, MS4A7, RAB3IL1, ROM1, FAM111A, MS4A6A, MS4A5, BTBD18, PGA3, PGA4, TUT1, SSRP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 STX3, MIR611, TCN1, SERPING1, SCGB1A1, BEST1, MYRF, TMEM258, DAGLA, AHNAK, TMEM109, CCDC86, CPSF7, ASRGL1, ZFP91, OR10W1, OR10V2P, MS4A8, MS4A14, SLC43A1, TNKS1BP1, SYT7, CD5, MTA2, GLYATL1, CD6, UBE2L6, MS4A1, MS4A3, LPXN, FADS2) 0.395630596676172 171 0.0703680261107785 0.803743388798777 8207 0.208312715279454 2 1 1 -6.90094862943351 LTS-040 NA NA NA NA LTS-040 chr11 62401927 62402339 413 * GANAB NA 0 NA 0.515 1 NA NA NA NA NA LTS-040 chr11 62402340 68854121 6451782 * c(NAALADL1, TMEM262, LOC100130987, MIR1237, RBM14-RBM4, ARL2-SNX15, HNRNPUL2-BSCL2, MIR4489, MIR4690, MIR4691, DPP3, KCNK7, LOC100996455, RASGRP2, CDK2AP2, TCIRG1, RTN3, RBM14, CDC42EP2, NXF1, KAT5, SSSCA1, DRAP1, TAF6L, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, PLA2G16, CHKA, CHRM1, CDCA5, SLC22A9, BATF2, SLC22A12, MRGPRD, MRGPRF, CATSPER1, HRASLS5, COX8A, CPT1A, C11orf84, CST6, CTSW, GRK2, GPHA2, NA NA NA NA NA NA NA NA NA LTS-040 MARK2, ESRRA, FAU, MRPL21, TPCN2, TIGD3, ALDH3B1, LRRN4CL, HNRNPUL2, ALDH3B2, FKBP2, KDM2A, ATG2A, GANAB, CLCF1, FAM89B, SNHG1, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, NUDT8, TMEM151A, PRDX5, BRMS1, TEX40, ATL3, PPP1R14B, BSCL2, NPAS4, GNG3, MAJIN, SLC25A45, NEAT1, CCDC88B, TTC9C, SLC22A24, RCOR2, MACROD1, GSTP1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ANKRD13D, TBX10, IGHMBP2, TMEM179B, TBC1D10C, MALAT1, SLC22A25, SLC22A10, SPDYC, GPR152, DOC2GP, PCNX3, ARL2, LRP5, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, NDUFV1, NDUFS8, OVOL1, KCNK4, PC, UBXN1, GAL, KMT5B, CABP2, TRMT112, PLCB3, C11orf24, POLR2G, WDR74, SSH3, HRASLS2, PPP1CA, CCDC87, PPP2R5B, PPP6R3, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CABP4, CD248, CORO1B, BAD, SCYL1, CARNS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 POLD4, PTPRCAP, BBS1, PYGM, MAP4K2, RAD9A, RARRES3, RBM4, RELA, DPF2, RPS6KB2, FAM86C2P, KLC2, SIPA1, MRPL11, SLC3A2, C11orf95, SPTBN2, STX5, SNORA57, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, METTL12, SF1, ZFPL1, LRFN4, TMEM223, LBHD1, UQCC3, C11orf80, NAA40, ZBTB3, TMEM134, MUS81, FOSL1, INTS5, UNC93B1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, LGALS12, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, AIP, SART1, AP5B1, FIBP, SYT12, ACY3, SNORD29, SNORD31, SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, SLC22A8, NRXN2, PITPNM1, RIN1, TESMIN, CCS, RCE1) 0.409832815542163 229 0.0776012492189013 0.771529936709913 15286 0.184619422109437 2 1 1 -6.7746535675088 LTS-040 NA NA NA NA LTS-040 chr11 68854122 68854561 440 * TPCN2 NA 0 NA 1.085 1 NA NA NA NA NA LTS-040 chr11 68854562 118085558 49230997 * c(NAALAD2, KCNE3, MIR708, LOC100129216, LOC100132078, LOC100133315, WTAPP1, NCAM1-AS1, KCTD21-AS1, MIR1304, MIR548K, SNORA70E, BACE1-AS, MIR4300, MIR4301, MIR3165, MIR1260B, MIR3920, MIR3664, RAB30-AS1, LOC100506368, CASP12, TPBGL, TMPRSS4-AS1, HSPB2-C11orf52, NDUFC2-KCTD14, FXYD6-FXYD2, MIR4490, MIR4491, MIR4696, MIR4692, MIR4693, LOC100652768, IL18BP, MIR5579, GRM5-AS1, JRKL-AS1, SHANK2-AS1, LOC101054525, RBM7, YAP1, NA NA NA NA NA NA NA NA NA LTS-040 POLD3, CTSC, STARD10, NEU3, ME3, GPR83, PRSS23, SLCO2B1, SNORD15B, CARD16, TMEM123, APOA5, ARAP1, SLC36A4, FAT3, TRIM64, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CLNS1A, CRYAB, XRRA1, FAM76B, SESN3, PIWIL4, ARHGAP42, KBTBD3, CWF19L2, KDELC2, LAYN, AMOTL1, DEUP1, C11orf65, DDX10, DHCR7, DLAT, DLG2, DRD2, B3GNT6, CTTN, FOLH1B, TPCN2, GDPD4, DDIAS, CCDC83, ORAOV1, SHANK2-AS3, LRTOMT, FAM181B, CCDC89, FDX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FGF3, FGF4, CEP164, SHANK2, ENDOD1, EXPH5, FAM168A, SIK2, SIK3, FOLR1, FOLR2, FOLR3, BACE1, RAB38, CADM1, PANX1, DEFB108B, FUT4, ANGPTL5, RNF169, ANKK1, RNF214, CHRDL2, ANAPC15, TSKU, REXO2, C2CD3, TENM4, LRRC32, TIMM8B, MYEOV, CHORDC1, RAB30, AQP11, LINC00900, P4HA3, PGM2L1, KLHL35, LOC283214, KCTD21, ALG1L9P, GRIA4, C11orf54, AAMDC, GRM5, GUCY1A2, BIRC2, BIRC3, HSPB2, APOA1, HTR3A, APOA4, ANKRD42, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 C11orf53, OR2AT4, HEPHL1, APOC3, PLET1, IL10RA, IL18, INPPL1, DNAJB13, ACAT1, KRTAP5-9, KRTAP5-10, LIPT2, VSTM5, GUCY2EP, TRIM77, IZUMO1R, KDM4E, FLJ42102, C11orf87, COLCA1, C11orf88, PHOX2A, MIR139, MIR34B, MIR34C, ARRB1, MAP6, DDI1, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, KRTAP5-7, KRTAP5-11, CARD17, MIR326, MTNR1B, MYO7A, NCAM1, NDUFC2, ATM, NNMT, FXYD2, NPAT, NUMA1, OMP, P2RY2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 P2RY6, PAFAH1B2, NOX4, PAK1, SIDT2, COA4, PDE2A, PPME1, HIKESHI, CWC15, PCF11, MRPL48, RSF1, PGR, FXYD6, CNTN5, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, SYTL2, ANKRD49, TTC12, LAMTOR1, ANO1, PPP2R1B, NADSYN1, FAM86C1, C11orf57, RNF121, ACER3, PRCP, ELMOD1, KDM4D, TMEM126B, THAP12, TEX12, TMPRSS4, SMCO4, EMSY, TRIM49, DSCAML1, USP35, CEP126, ARHGAP20, USP28, KRTAP5-8, PTS, PLEKHB1, CREBZF, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RAB6A, CARD18, CCND1, RDX, CCDC90B, CCDC81, AASDHPPT, SNORD15A, RPS3, SCARNA9, SCN2B, SCN4B, SDHD, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, LOC643733, LOC643923, CLDN25, C11orf1, TMEM135, SNORA8, SLN, KCTD14, SNORA18, SNORA40, TAGLN, SNORD5, THRSP, TRPC6, CAPN5, TYR, UCP2, UCP3, UVRAG, WNT11, ZBTB16, ALG8, TAF1D, DYNC2H1, NARS2, CCDC82, ALG9, MOGAT2, PAAF1, PDGFD, CUL5, TMPRSS5, GDPD5, CLPB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PICALM, FZD4, CASP1, CASP4, CASP5, BCO2, TMEM133, TMPRSS13, TMEM126A, DCUN1D5, MSANTD4, MAML2, DGAT2, BUD13, RELT, PPFIA1, C11orf70, DIXDC1, CEP295, ZC3H12C, OR7E2P, JRKL, SERPINH1, EED, FADD, ZPR1, MTMR2, ATG16L2, PCSK7, HTR3B, ALKBH8, ZW10, FDXACB1, INTS4, MMP20, MED17, CEP57, SPCS2, ARHGEF17, GAB2, FCHSD2, FGF19) 0.393140915902621 521 0.0832082322511773 0.791628566418414 29384 0.220868752187328 2 1 1 -6.93324491398099 LTS-040 NA NA NA NA LTS-040 chr11 118085559 119025714 940156 * c(LOC100131626, MIR3656, MIR4492, MPZL2, HYOU1, ATP5L, TREH, JAML, TTC36, DDX6, DPAGT1, MPZL3, PHLDB1, SLC37A4, HINFP, BCL9L, FOXR1, H2AFX, HMBS, CCDC84, ARCN1, KMT2A, TRAPPC4, VPS11, IFT46, RPS25, ABCG4, CXCR5, RPL23AP64, UPK2, TMEM25, CD3D, CD3E, CD3G, UBE4A, C2CD2L) 0.413105226914393 51 0.0777575618918993 0.762089221200687 2882 0.40677280455761 2 1 1 -6.75075081535786 LTS-040 chr11 119025715 119027054 1340 * ABCG4 NA 0 NA 1.045 1 NA NA NA NA NA LTS-040 chr11 119027055 134856661 15829607 * c(LOC100128239, PATE3, MIR3167, USP2-AS1, SENCR, MIR4493, KIRREL3-AS2, ADAMTS8, CHEK1, VPS26B, GLB1L3, TIRAP, PANX3, TMEM45B, PATE1, ADAMTS15, ETS1, C11orf45, HYLS1, TMEM218, SLC37A2, OR8B12, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, SPATA19, HEPACAM, OAF, IGSF9B, FLI1, NCAPD3, ARHGEF12, VSIG2, TRIM29, POU2F3, OR8G2, OR8B8, OR8B2, ACAD8, B3GAT1, CCDC153, OR8D1, OR8D2, OR8B4, KIRREL3-AS3, NA NA NA NA NA NA NA NA NA LTS-040 C11orf44, MIR4697HG, LOC283177, DCPS, GRIK4, ZBTB44, THYN1, DDX25, HSPA8, APLP2, TMEM225, OR8D4, LOC341056, STT3A, KCNJ1, KCNJ5, BSX, OR6X1, OR6M1, OR10G4, OR10G7, OR8B3, OR8A1, MIR100HG, PATE2, PATE4, ST3GAL4-AS1, SNX19, VWA5A, MIRLET7A2, MIR100, MIR125B1, BLID, MCAM, LINC00167, NFRKB, NRGN, OPCML, NTM, CDON, SPA17, SIAE, ROBO4, FOXRED1, SCN3B, ACRV1, CRTAM, PRDM10, GRAMD1B, NECTIN1, SC5D, PKNOX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TP53AIP1, ABCG4, HEPN1, ROBO3, ST3GAL4, LOC649133, SORL1, SRPRA, ST14, TECTA, THY1, ZNF202, RNF26, FAM118B, NLRX1, MSANTD2, CLMP, PDZD3, C11orf63, CCDC15, PUS3, MFRP, JAM3, KIRREL3, RPUSD4, TBRG1, UBASH3B, BARX2, CBL, GLB1L2, ESAM, USP2, EI24, FEZ1, ARHGAP32) 0.392681244723778 319 0.0975332998678479 0.810321608733109 11607 0.239379265575546 2 1 1 -7.01889427225678 LTS-040 NA NA NA NA LTS-040 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.675 1 NA NA NA NA NA LTS-040 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.32 1 NA 1.34495884330693 5 0.443685924951423 5 5 0 -5.76456649993683 LTS-040 chr12 176140 7654076 7477937 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, LPCAT3, LRRC23, EMG1, P3H3, AKAP3, RAD51AP1, TSPAN9, CHD4, C12orf57, PHB2, FBXL14, ZNF384, DSTNP2, ATN1, PIANP, DCP1B, ENO2, FGF6, FKBP4, FOXM1, ERC1, IFFO1, GAPDH, GALNT8, GPR162, GNB3, C1RL-AS1, CD163L1, RPL13P5, B4GALNT3, LOC283440, ACSM4, KCNA1, KCNA5, KCNA6, LAG3, LTBR, MIR141, MIR200C, IQSEC3, NDUFA9, NINJ2, NOP2, NA NA NA NA NA NA NA NA NA LTS-040 NTF3, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, ITFG2, PRMT8, PARP11, ANO2, C12orf4, TIGAR, LPAR5, LOC574538, PTMS, PTPN6, PEX5, RAD52, KDM5A, SCNN1A, WNK1, SLC6A12, SLC6A13, LRTM2, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TEAD4, TNFRSF1A, C1R, C1S, TPI1, TULP3, VWF, CACNA1C, ADIPOR2, FGF23, USP5, MLF2, WNT5B, CDCA3, RHNO1, NRIP2, RBP5, CCDC77, ACRBP, SPSB2, CRACR2A, DYRK4, CCND2, CD4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CD9, CD163, CACNA2D4, CD27, CLSTN3, NCAPD2) 0.443486381852436 212 0.0747746004938361 1.62115558849185 9283 0.656022239566349 6 3 3 -6.77456591597944 LTS-040 NA NA NA NA LTS-040 chr12 7654077 7655020 944 * CD163 NA 0 NA 1.378 1 NA NA NA NA NA LTS-040 chr12 7655021 9571590 1916570 * c(LINC00987, KLRG1, SLC2A14, A2ML1, A2M-AS1, CLEC4C, PHC1, A2M, LINC00612, NECAP1, CLEC4E, A2MP1, CLEC4D, APOBEC1, DPPA3, NANOGNB, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, CLEC4A, FAM90A1, FOXJ2, AICDA, RIMKLB, PZP, POU5F1P3, LOC642846, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, CD163, CLEC6A, GDF3) 0.413575206932606 58 0.0970115153978238 1.52847749950479 2133 0.478207070366391 6 3 3 -6.74738732976319 LTS-040 chr12 9571591 9572178 588 * DDX12P 0.488 1 NA 1.637880237429 7 0.762052460386391 6 6 0 -5.76441099006834 LTS-040 chr12 9572179 9747361 175183 * DDX12P 0.290557666347059 9 0.150282604153345 1.34912342169423 157 0.468837478592188 5 4 1 -6.73465624635767 LTS-040 chr12 9747362 9747466 105 * character(0) 0.491 1 NA 1.6309034671505 3 0.539278530384191 6 6 0 -5.76441037239799 LTS-040 chr12 9747467 10579525 832059 * c(KLRF2, KLRC4-KLRK1, TMEM52B, CLEC12A, CLECL1, KLRK1, GABARAPL1, CLEC9A, CLEC2D, LOC374443, KLRB1, KLRC2, KLRC3, KLRD1, CLEC2A, CLEC12B, OLR1, CLEC1B, CLEC1A, KLRF1, CLEC7A, KLRC4, CD69, CLEC2B) 0.452978397550989 43 0.0332146614013214 1.47894441368149 1123 0.436073541115796 6 3 3 -7.12372722211092 LTS-040 chr12 10579526 10583164 3639 * c(KLRC2, KLRC3) NA 0 NA 3.108 1 NA NA NA NA NA LTS-040 chr12 10583165 10600248 17084 * c(KLRC1, KLRC2, KLRC3) 0.46286930182859 4 0.0119582607431014 2.37707298379526 93 1.27866158750193 19 10 9 -9.95400987977607 LTS-040 chr12 10600249 10601795 1547 * KLRC1 NA 0 NA 1.241 1 NA NA NA NA NA LTS-040 chr12 10601796 11001032 399237 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, TAS2R9, TAS2R8, TAS2R7, TAS2R10, MAGOHB, STYK1, YBX3) 0.429667786545037 17 0.116070560436314 1.42544642232454 417 0.570927891399697 6 3 3 -6.74127379621064 LTS-040 chr12 11001033 11150319 149287 * c(PRH1-PRR4, PRR4, TAS2R20, TAS2R50, TAS2R13, TAS2R14, PRB4, PRH1, PRH2) 0.457504423270072 14 0.0797146008107522 1.60099555102357 192 0.499183274385973 6 3 3 -6.82716508100777 LTS-040 chr12 11150320 11174213 23894 * c(PRH1-PRR4, TAS2R20, PRB4) 0.298 1 NA 1.72694197112056 7 0.724181245400954 7 7 0 -5.76443214696733 LTS-040 chr12 11174214 11286820 112607 * c(PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, PRB4) 0.266957482310771 54 0.0724924632820847 1.9842372038338 167 0.981018030792755 9 7 2 -6.735613640284 LTS-040 chr12 11286821 11287271 451 * c(PRH1-PRR4, TAS2R30, PRB4) 0.423 1 NA 1.5501438046362 9 0.26346969043474 6 6 0 -5.76441132572287 LTS-040 chr12 11287272 29444312 18157041 * c(MIR920, SMIM10L1, MANSC4, MIR4302, LOC100506314, LOC100506393, RASSF8-AS1, PRH1-PRR4, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, RASSF8, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, LINC00477, ETFRF1, C12orf60, LMNTD1, C12orf77, EMP1, EPS8, ETV6, STK38L, FGFR1OP2, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, LINC01252, SLCO1B7, SMCO2, TAS2R42, ITPR2, KCNJ8, KRAS, RPL13AP20, REP15, LDHB, ARHGDIB, LRMP, NA NA NA NA NA NA NA NA NA LTS-040 LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, PDE3A, PDE6H, WBP11, TM7SF3, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, CASC1, CCDC91, PRB1, PRB3, PRB4, ETNK1, GPRC5D, FAR2, ASUN, ATF7IP, H2AFJ, LMO3, CMAS, ARNTL2, PTHLH, KLHL42, FAM234B, PTPRO, BCAT1, RECQL, MRPS35, ST8SIA1, PRB2, SLCO1A2, SOX5, MIR613, MIR614, SKP1P2, C12orf71, SLC15A5, BHLHE41, BCL2L14, RERGL, PLBD1, PYROXD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SPX, SSPN, DUSP16, APOLD1, GSG1, PPFIBP1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, MED21, C2CD5) 0.432427537128259 182 0.10865262436431 1.59395987806846 9003 0.653514448941 6 3 3 -6.73807753325662 LTS-040 NA NA NA NA LTS-040 chr12 29444313 29444316 4 * FAR2 NA 0 NA 1.505 1 NA NA NA NA NA LTS-040 chr12 29444317 33592681 4148365 * c(LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, OVCH1, SYT10, H3F3C, TSPAN11, YARS2, ERGIC2, PKP2, KIAA1551, FAR2, FAM60A, BICD1, CAPRIN2, FLJ13224, TMTC1) 0.441869246202765 49 0.101098767966547 1.46640992832852 2740 0.400609520890058 6 3 3 -6.82994490880432 LTS-040 chr12 33592682 34182671 589990 * c(SYT10, ALG10) NA 0 NA 1.54694701689113 63 0.419395214114467 6 NA NA -5.76518030779244 LTS-040 chr12 38710341 38710459 119 * character(0) 0.322 1 NA 0.583016258216303 5 0.365287147323855 1 1 0 -5.76441013695031 LTS-040 chr12 38710460 40952934 2242475 * c(SLC2A13, LRRK2, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.352660927923435 59 0.0671504238797905 1.24181881432692 1757 0.38878090116982 4 3 1 -6.82120334564042 LTS-040 chr12 40952935 40960005 7071 * character(0) 0 1 NA 1.30565513547741 36 0.428679858902388 5 5 0 -5.76447793315587 LTS-040 chr12 40960006 41414246 454241 * CNTN1 0.277 1 NA 1.17972779589982 133 0.403093194123618 4 4 0 -5.76441043720553 LTS-040 chr12 41414247 41418950 4704 * CNTN1 NA 0 NA 1.016 1 NA NA NA NA NA LTS-040 chr12 41418951 44177550 2758600 * c(YAF2, CNTN1, PRICKLE1, GXYLT1, PDZRN4, IRAK4, PPHLN1, ADAMTS20, PUS7L, ZCRB1) 0.262918426135177 35 0.0893603318456407 1.10079553443278 1095 0.454015180003382 4 3 1 -7.09605247546957 LTS-040 chr12 44177551 48063990 3886440 * c(PCED1B-AS1, MIR4698, ANO6, ARID2, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, SLC38A2, SLC38A4, TWF1, RNY5, RPAP3, SLC38A1, RACGAP1P, TMEM117, PCED1B, SCAF11) 0.199398153122846 29 0.0622606352321223 0.940693455291999 1635 0.228649356332793 3 3 0 -6.80972635311703 LTS-040 chr12 48063991 48577515 513525 * c(RAPGEF3, COL2A1, ASB8, SENP1, CCDC184, HDAC7, PFKM, SLC48A1, VDR, TMEM106C, RPAP3, ENDOU) 0.27910660801779 58 0.0587675422060418 1.11186439201877 1504 0.33337943062313 5 4 1 -6.86138305687436 LTS-040 chr12 48577516 50174374 1596859 * c(TROAP, LOC100335030, MIR4701, TUBA1B, MCRS1, ADCY6, RHEBL1, C12orf54, ZNF641, OR10AD1, DDN, KCNH3, ANP32D, LINC00935, PRPF40B, RND1, C1QL4, H1FNT, OR8S1, ARF3, CCDC184, LALBA, DHH, FKBP11, KANSL2, PRKAG1, LMBR1L, PRPH, SPATS2, SNORA2A, SNORA2B, SNORA2C, TMBIM6, WNT1, WNT10B, CACNB3, TUBA1A, DNAJC22, KMT2D, FAM186B, TUBA1C, CCDC65, CCNT1, FMNL3, DDX23) 0.201398408161274 48 0.0572234290595498 0.945657777493366 3593 0.237669210851707 3 3 0 -6.76137878839151 LTS-040 chr12 50174375 50184917 10543 * character(0) NA 0 NA 1.72 1 NA NA NA NA NA LTS-040 chr12 50184918 52315237 2130320 * c(BCDIN3D-AS1, MIR1293, GALNT6, LARP4, FAM186A, BCDIN3D, CELA1, FAIM2, METTL7A, LETMD1, GPD1, LOC283332, TMPRSS12, RACGAP1, ANKRD33, AQP2, AQP5, AQP6, FIGNL2, ASIC1, ATF1, SLC11A2, BIN2, LIMA1, POU6F1, SMAGP, DIP2B, NCKAP5L, HIGD1C, SCN8A, SMARCD1, TFCP2, CSRNP2, COX14, CERS5, ACVRL1, SLC4A8, DAZAP2) 0.277614741150285 78 0.0682204073281887 1.07434125482475 3511 0.599767468872586 5 4 1 -6.95007577196739 LTS-040 chr12 52315238 52370319 55082 * c(ACVR1B, ACVRL1) NA 0 NA 1.17884520274229 55 0.264481460782496 4 NA NA -5.76441018415837 LTS-040 chr12 52370320 52374694 4375 * ACVR1B NA 0 NA 0.948 1 NA NA NA NA NA LTS-040 chr12 52374695 52435691 60997 * c(GRASP, NR4A1, ACVR1B) 0.187 1 NA 0.946807702106176 181 0.192203803678693 3 3 0 -5.76559206990651 LTS-040 chr12 52435692 53509812 1074121 * c(KRT71, KRT74, KRT72, KRT80, KRT78, EIF4B, TNS2, LOC283335, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, IGFBP6, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT76, ATG101, SOAT2, SPRYD3, KRT75) 0.176691547099067 79 0.0673257376468439 1.00961165963431 2349 0.318859033372817 3 3 0 -6.78424998122273 LTS-040 chr12 53509813 53509933 121 * SOAT2 0.235 1 NA 0.620786511582382 3 0.193453698164014 1 1 0 -5.76441822648011 LTS-040 chr12 53509934 53587721 77788 * c(ZNF740, ITGB7, CSAD, SOAT2) 0.289565101112561 3 0.0291032644217105 1.03303920356659 266 0.22642018411135 5 4 1 -6.83565889823751 LTS-040 chr12 53587722 53587988 267 * ITGB7 NA 0 NA 1.137 1 NA NA NA NA NA LTS-040 chr12 53587989 58240348 4652360 * c(HOTAIR, AGAP2-AS1, LOC100240734, LOC100240735, MIR1228, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, TSFM, CTDSP2, CDK2, CDK4, RNF41, GDF11, CNPY2, DCTN2, AVIL, PTGES3, OS9, ATF7, BAZ2A, NXPH4, GPR182, MBD6, ARHGEF25, AGAP2, DCD, MUCL1, OR2AP1, OR10P1, SDR9C7, SP7, GTSF1, OR10A7, MYL6B, CS, CYP27B1, DGKA, DDIT3, DTX3, METTL7B, ERBB3, COPZ1, R3HDM2, NEMP1, ESYT1, CBX5, SMUG1, STAC3, OR6C74, NA NA NA NA NA NA NA NA NA LTS-040 OR6C3, B4GALNT1, METTL21B, ZNF385A, BLOC1S1, SNORD59A, AMHR2, GLS2, GLI1, OR6C6, ANKRD52, SLC39A5, SPRYD4, ORMDL2, NCKAP1L, HNRNPA1, APOF, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, INHBC, ITGA5, ITGA7, ITGB7, KIF5A, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, LRP1, MIR196A2, MIR26A2, MARS, METTL1, MIP, MMP19, FLJ12825, OR9K2, MIR148B, MYL6, MYO1A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NAB2, NACA, NFE2, PA2G4, ATP5B, PCBP2, PDE1B, IL23A, ATP5G2, PFDN5, GPR84, PRR13, PPP1R1A, PRIM1, NDUFA4L2, CALCOCO1, NEUROD4, RAB5B, RARG, RBMS2, RDH5, C12orf10, RPL41, RPS26, TSPAN31, ARHGAP9, IKZF4, GLYCAM1, SHMT2, PMEL, SLC26A10, SMARCC2, SP1, STAT2, STAT6, SUOX, TAC3, TARBP2, SNORD59B, MIR615, MAP3K12, NABP2, PIP4K2C, AAAS, INHBE, PYM1, SARNP, ZC3H10, MFSD5, DNAJC14, RDH16, NPFF, HSD17B6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TIMELESS, LACRT, MARCH9, COQ10A, CD63, ESPL1, TESPA1, ZBTB39, PAN2) 0.296022040077548 149 0.0741236251707426 1.08094401001223 11574 0.253856592522091 4 3 1 -7.17166386085631 LTS-040 NA NA NA NA LTS-040 chr12 58240349 58240353 5 * CTDSP2 0.201 1 NA 0.364 1 NA NA NA NA NA LTS-040 chr12 58240354 60176407 1936054 * c(LOC100506844, CTDSP2, LRIG3, ATP23, SLC16A7) 0.237218533798304 4 0.0844526494551829 1.06756096010197 351 0.245013994201346 3 3 0 -7.01530977871917 LTS-040 chr12 62102011 63087790 985780 * c(MON2, LINC01465, FAM19A2, MIRLET7I, PPM1H, USP15) 0.24328229801171 10 0.0584105203613946 0.830805695724019 696 0.254551594564757 2 2 0 -6.76836814982135 LTS-040 chr12 63087791 73059390 9971600 * c(LOC100130075, MIR1279, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100507250, TMEM5, CCT2, FRS2, CPSF6, WIF1, IRAK3, XPOT, C12orf56, RAB3IP, TPH2, CPM, BEST3, C12orf66, ZFC3H1, RPSAP52, RAB21, TBC1D30, GRIP1, LEMD3, MSRB3, KCNMB4, GNS, RASSF3, TRHDE-AS1, DPY19L2, TBK1, TRHDE, IFNG, LRRC10, FLJ41278, LYZ, MDM2, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, SLC35E3, IL26, CAND1, MDM1, NUP107, PPM1H, SRGAP1, NA NA NA NA NA NA NA NA NA LTS-040 PTPRB, PTPRR, RAP1B, TBC1D15, MIR548C, TSPAN8, MRS2P2, YEATS4, HMGA2, THAP2, LLPH, DYRK2, LGR5, HELB) 0.195795120401447 102 0.0685084518802841 0.956276438564375 6790 0.291273515372456 3 3 0 -6.77540931133609 LTS-040 NA NA NA NA LTS-040 chr12 74931559 78225309 3293751 * c(GLIPR1, KRR1, OSBPL8, GLIPR1L2, E2F7, CSRP2, PHLDA1, ZDHHC17, GLIPR1L1, KCNC2, NAP1L1, ATXN7L3B, BBS10, CAPS2, NAV3) 0.101638368285162 11 0.118272643421115 0.790653383722064 1609 0.31650905268432 2 2 0 -7.50977359137546 LTS-040 chr12 78225310 88593093 10367784 * c(MIR1252, MIR4699, MIR548AL, TSPAN19, TMTC2, TMTC3, C12orf50, MGAT4C, OTOGL, CCDC59, PTPRQ, MKRN9P, MYF5, MYF6, PPP1R12A, NTS, PAWR, SLC6A15, SYT1, MIR617, MIR618, ACSS3, CEP290, ALX1, LRRIQ1, METTL25, PPFIA2, LIN7A, NAV3, C12orf29, RASSF9) 0.204814974321725 61 0.0715091762998426 0.870558194210518 3391 0.325930015832186 3 3 0 -7.47033815966185 LTS-040 chr12 88593094 88593181 88 * TMTC3 NA 0 NA 0.514 1 NA NA NA NA NA LTS-040 chr12 88593182 121177107 32583926 * c(TMPO-AS1, LINC01405, USP30-AS1, PGAM1P5, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR3685, MIR3652, MIR3922, LOC100505978, PXN-AS1, NRAV, POC1B-GALNT4, MIR4498, MIR4472-2, MIR4700, MIR4497, MIR5700, ARPC3, PLXNC1, TRAFD1, ERP29, CKAP4, GCN1, METAP2, SDS, RAB35, KERA, PRDM4, CIT, PWP1, FICD, NUDT4, SDSL, IQCD, DEPDC4, CCDC38, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, NA NA NA NA NA NA NA NA NA LTS-040 SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, COX6A1, CRY1, AMDHD1, SOCS2-AS1, CEP83-AS1, RAD9B, FAM109A, LINC00934, KRT19P2, TMTC3, ALDH1L2, SLC5A8, PPTC7, CCDC63, CCDC60, DAO, DCN, EPYC, DTX1, DUSP6, PLBD2, FAM71C, RMST, CCER1, ELK3, ALDH2, RPH3A, FBXO21, UHRF1BP1L, CUX2, KIAA1033, MED13L, SIRT4, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, TBX5-AS1, LINC01619, FBXW8, HSPB8, UTP20, POC1B, GAS2L3, LINC00485, MYO1H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 HECTD4, KSR2, GATC, MRPL42, IFT81, FAM216A, HCFC2, HAL, APAF1, ACACB, MMAB, LINC00936, TMEM119, C12orf74, IGF1, ACADS, C12orf42, C12orf75, CFAP73, TMEM233, ARL1, C12orf76, LTA4H, LUM, MIR135A2, KITLG, ASCL1, LINC00615, PLEKHG7, MIR331, MSI1, MVK, MYBPC1, MYL2, NFYB, NOS1, ATP2A2, ATP2B1, OAS1, EID3, OAS2, OAS3, PEBP1, SYCP3, CHST11, PAH, CCDC53, CEP83, GPN3, GLTP, MAPKAPK5-AS1, CDK17, TAOK3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 POP5, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, VEZT, GOLGA2P5, PRKAB1, SCYL2, POLR3B, FGD6, WSB2, NDUFA12, ANKS1B, CHPT1, CLLU1OS, CLLU1, TMCC3, PTPN11, PXN, NTN4, TRPV4, RFC5, RFX4, RPL6, RPLP0, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643339, LOC643711, LOC643770, SUDS3, ACTR6, SNRPF, SNORA53, TBX5, TBX3, MIR620, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 BTG1, TDG, TMPO, NR2C1, HSP90B1, LOC728084, C12orf73, LOC728739, TXNRD1, UBE2N, UNG, NUP37, DDX54, GNPTAB, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, USP44, SLC41A2, EEA1, TCHP, COQ5, HVCN1, RASAL1, SRRM4, UNC119B, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, DYNLL1, SRSF9, GALNT4, CRADD, HRK, ADAM1A, SOCS2, ANKRD13A, TMEM116, UBE3B, TMEM263, BICDL1, CABP1, WSCD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SART3, MLEC, GIT2, NUAK1, RBM19, RNF10, NR1H4) 0.222346486285382 436 0.0641594559288739 0.813439091629676 24906 0.395029708721686 2 2 0 -7.00880137051641 LTS-040 NA NA NA NA LTS-040 chr12 121177108 124371864 3194757 * c(MIR4304, MIR3908, CLIP1-AS1, LOC100507091, MPHOSPH9, CAMKK2, TMED2, SNRNP35, SPPL3, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, HNF1A-AS1, GTF2H3, HPD, HCAR2, LINC01089, ACADS, RILPL1, IL31, KMT5A, P2RX4, P2RX7, ARL6IP4, ANAPC5, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, DDX55, BCL7A, CLIP1, C12orf43, VPS33A, RSRC2, HNF1A, B3GNT4, OGFOD2, VPS37B, NA NA NA NA NA NA NA NA NA LTS-040 TCTN2, RNF34, CDK2AP1, CCDC62, KDM2B, ORAI1, DENR, OASL, HCAR3, HIP1R, C12orf65, KNTC1) 0.220100059359677 122 0.0784359786724488 0.785542611527476 5770 0.232033850309709 2 2 0 -6.79455562259373 LTS-040 NA NA NA NA LTS-040 chr12 124371865 124377776 5912 * DNAH10 NA 0 NA 1.509 1 NA NA NA NA NA LTS-040 chr12 124377777 133425336 9047560 * c(LOC100128554, LOC100130238, LOC100190940, MIR3612, LRCOL1, LINC00943, ZNF664-FAM101A, MIR5188, LINC00507, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, RFLNA, ZNF664, GLT1D1, PGAM5, DNAH10, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, UBC, NOC4L, NA NA NA NA NA NA NA NA NA LTS-040 CCDC92, PUS1, ULK1, TMEM132C, PIWIL1, SCARB1, NCOR2) 0.226031894861071 155 0.0639310655932182 0.8565146584953 5241 0.276158049088213 2 2 0 -7.33892304544453 LTS-040 NA NA NA NA LTS-040 chr12 133425337 133428102 2766 * CHFR NA 0 NA 0.622 1 NA NA NA NA NA LTS-040 chr12 133428103 133812682 384580 * c(ZNF605, ZNF891, ZNF268, CHFR, ANHX, ZNF10, ZNF140) 0.232392059651294 46 0.0497379412715521 0.775752124836012 981 0.241884496494648 2 2 0 -6.77206434101829 LTS-040 chr12 133812683 133812708 26 * character(0) NA 0 NA 0.636 1 NA NA NA NA NA LTS-040 chr13 19271620 19600475 328856 * c(LINC00417, ANKRD20A9P, LINC00442) 0.41 1 NA 1.8936847548238 3 1.02642729893549 8 8 0 -5.76474750767549 LTS-040 chr13 19600476 33347497 13747022 * c(ANKRD26P3, LINC00426, LINC00421, PAN3-AS1, MIR2276, MINOS1P1, SACS-AS1, LINC00327, TEX26-AS1, MIR4499, RNU6-52P, LINC00297, MTUS2-AS1, LINC00398, LINC00424, SPATA13-AS1, FRY, USPL1, CDK8, SAP18, N4BP2L2, CDX2, GJB6, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, EEF1AKMT1, SKA3, MICU2, SPATA13, LNX2, FGF9, PDS5B, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, NA NA NA NA NA NA NA NA NA LTS-040 SACS, LATS2, SNORD102, GJA3, GJB2, GPR12, SLC46A3, GTF3A, HMGB1, C1QTNF9, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, ATP8A2, IL17D, UBL3, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, MIPEPP3, SLC7A1, BRCA2, TUBA3C, ZMYM2, MRPL57, IFT88, KATNAL1, MEDAG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 N4BP2L1, MTMR6, ZMYM5, TPTE2, NUP58) 0.409433219530494 156 0.0803267919627729 1.02968932418288 8310 0.307008874785321 3 2 1 -6.96776957757979 LTS-040 NA NA NA NA LTS-040 chr13 33347498 33349107 1610 * PDS5B NA 0 NA 1.148 1 NA NA NA NA NA LTS-040 chr13 33349108 41239880 7890773 * c(MIR548F5, MIR4305, SPG20-AS1, CCDC169-SOHLH2, LINC00332, LINC00366, LINC00423, LINC00457, LINC00571, STARD13-AS, LHFP, POSTN, EXOSC8, CSNK1A1L, STOML3, PDS5B, FOXO1, SPG20, NBEA, ALG5, FREM2, NHLRC3, SERTM1, LINC00547, LINC00548, SMAD9, UFM1, SOHLH2, SUPT20H, COG6, RFC3, RFXAP, LINC00598, TRPC4, CCDC169, PROSER1, CCNA1, STARD13, DCLK1, KL) 0.390757897984564 55 0.140294454654252 1.08474484541082 3112 0.361398304885127 4 2 2 -7.01274167522004 LTS-040 chr13 41239881 53625188 12385308 * c(LINC00462, TPT1-AS1, MIR759, MIR320D1, MIR3613, OR7E37P, VWA8-AS1, CPB2-AS1, MIR4703, TPTE2P5, MIR5693, MIR5006, LINC00563, LINC00441, MED4-AS1, DLEU7-AS1, RNASEH2B-AS1, SMIM2-IT1, MRPS31P5, LPAR6, SLC25A15, TRIM13, MRPS31, DLEU1, OLFM4, SUGT1, RCBTB2, LECT1, WBP4, AKAP11, ARL11, WDFY2, LINC00284, CPB2, FAM216B, LACC1, LINC00330, HNRNPA1L2, ST13P4, DGKH, CCDC122, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, NA NA NA NA NA NA NA NA NA LTS-040 TPTE2P3, CTAGE10P, FNDC3A, VWA8, FOXO1, ZC3H13, LRCH1, SLC25A30, INTS6, CKAP2, NUFIP1, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, HTR2A, NEK5, KPNA3, KCTD4, SERP2, LCP1, MIR16-1, ALG11, NEK3, PCDH8, VPS36, PHF11, ATP7B, ENOX1, RCBTB1, NUDT15, GPALPP1, THSD1, CYSLTR2, SPRYD7, RB1, TSC22D1-AS1, LINC00371, SERPINE3, SNORA31, MIR621, TPT1, NAA16, RNASEH2B, DHRS12, RUBCNL, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CDADC1, CAB39L, CCDC70, COG3, SETDB2, KBTBD7, EBPL, TNFSF11, SUCLA2, DLEU2, TSC22D1, KBTBD6, EPSTI1, ITM2B, MTRF1, UTP14C) 0.411359817076662 134 0.0827217013097494 1.0006235187392 7203 0.303774538080099 3 2 1 -6.80071283601189 LTS-040 NA NA NA NA LTS-040 chr13 53625189 67801532 14176344 * c(MIR1297, MIR3169, MIR5007, LINC00558, PCDH9-AS2, PCDH9-AS3, DIAPH3-AS1, DIAPH3-AS2, OLFM4, PCDH17, OR7E156P, PCDH9, PCDH20, PRR20B, PRR20D, PRR20E, TDRD3, DIAPH3) 0.453600808320771 12 0.0286529653656026 1.23509350160452 680 0.39054439549799 4 2 2 -7.37134858305164 LTS-040 chr13 67801533 67802709 1177 * PCDH9 NA 0 NA 1.23300143025187 25 0.151217834045239 4 NA NA -5.76447149234407 LTS-040 chr13 70274717 70275285 569 * KLHL1 0.263 1 NA 0.887150129236659 11 0.86125676669726 3 3 0 -5.76441469480395 LTS-040 chr13 70275286 80910792 10635507 * c(MIR3665, RBM26-AS1, LINC00331, LINC00381, LINC00446, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, LINC00348, SPRY2, PIBF1, KLF12, KCTD12, CLN5, SLAIN1, DACH1, COMMD6, EDNRB, DIS3, MYCBP2, FBXL3, LINC00347, LMO7, MZT1, POU4F1, NDFIP2, KLHL1, ATXN8OS, RBM26, CTAGE11P, KLF5, BTF3P11, LMO7DN, ACOD1, UCHL3, RNF219, BORA, SCEL, TBC1D4) 0.221065198898962 33 0.100474791426114 0.773918978622749 3176 0.211811365557716 2 2 0 -6.77873756286084 LTS-040 chr13 80910793 80911953 1161 * SPRY2 NA 0 NA 0.830124456084261 25 0.137665137198929 2 NA NA -5.76454710331596 LTS-040 chr13 84451373 84453292 1920 * SLITRK1 0.373 1 NA 1.29840308454893 41 0.388095605206356 5 5 0 -5.76443743951011 LTS-040 chr13 84453293 108862862 24409570 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, BIVM-ERCC5, MIR2681, MIR548AN, MIR4500, MIR4705, GPC6, MIR548AS, GPC5-AS1, GPC6-AS2, LINC00333, LINC00351, LINC00353, LINC00379, LINC00433, LINC00443, LINC00559, CLDN10-AS1, PCCA-AS1, NALCN-AS1, LINC00359, MBNL2, FARP1, ABCC4, SOX21, SLITRK1, METTL21EP, RNF113B, LINC00410, LINC00343, GPR180, DCT, CLYBL, GPR183, EFNB2, METTL21C, ERCC5, FGF14, GPC5, DZIP1, DOCK9, TGDS, NALCN, NA NA NA NA NA NA NA NA NA LTS-040 SLITRK5, HS6ST3, DAOA, OXGR1, DAOA-AS1, FGF14-IT1, FGF14-AS2, LINC00551, GPR18, UBAC2, IPO5, LIG4, MIR19B1, MIR17HG, PCCA, BIVM, ARGLU1, UGGT2, DNAJC3, RAP2A, MIR4500HG, CCDC168, SLC10A2, SLC15A1, MIR622, MIR623, TPP2, LINC00460, FAM155A, ZIC2, KDELC1, SLITRK6, STK24, TMTC4, ZIC5, GGACT, CLDN10, TEX30, ITGBL1, TM9SF2) 0.428049876963994 108 0.126084252587041 1.18859009894901 5290 0.367131451976635 4 2 2 -6.74002806323351 LTS-040 NA NA NA NA LTS-040 chr13 108862863 108863591 729 * LIG4 0.482 1 NA 1.11391449823439 15 0.136018801221428 4 4 0 -5.76448678309106 LTS-040 chr13 108863592 114783707 5920116 * c(LINC00552, MCF2L-AS1, GAS6-AS2, LINC00565, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, SPACA7, COL4A1, COL4A2, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, TMCO3, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SOX1, TFDP1, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.454864710644812 95 0.0478305777273648 1.20204115631569 3932 0.328697429722353 4 2 2 -6.96033661508269 LTS-040 chr13 114783708 114784209 502 * RASA3 NA 0 NA 0.972 1 NA NA NA NA NA LTS-040 chr13 114784210 115091399 307190 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.462916385987582 15 0.0402790268005571 1.03388611645828 257 0.242285957613243 4 2 2 -7.25992216913041 LTS-040 chr13 115091400 115092817 1418 * CHAMP1 NA 0 NA 0.93584066742885 29 0.0969249620885253 3 NA NA -5.76460325391558 LTS-040 chr14 19434116 20201561 767446 * c(BMS1P17, POTEG, POTEM, OR11H2) 0.346 1 NA 1.34868016781448 6 0.902450811217247 5 5 0 -5.76467817034374 LTS-040 chr14 20201562 20404767 203206 * c(OR4N2, OR4K2, OR4Q3, OR4M1, OR4K5, OR4K1) 0.380841304206503 15 0.107492502507096 1.89092037144058 204 0.384598132892 8 5 3 -6.74162850015577 LTS-040 chr14 20404768 20404847 80 * OR4K1 NA 0 NA 1.651 1 NA NA NA NA NA LTS-040 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.835 1 NA NA NA NA NA LTS-040 chr14 20443534 20470317 26784 * OR4K15 0.191 1 NA 0.962063086220618 25 0.181853759928136 3 3 0 -5.76457752060306 LTS-040 chr14 20470318 22509019 2038702 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, OR4K14, OR4L1, OR11H6, KLHL33, OR10G3, OR10G2, OR4E2, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, NA NA NA NA NA NA NA NA NA LTS-040 TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, TTC5, TOX4) 0.19611406272211 118 0.0499270574703912 0.938203010725008 3570 0.292793135322025 3 3 0 -6.76027064975621 LTS-040 NA NA NA NA LTS-040 chr14 22509020 22509081 62 * character(0) NA 0 NA 1.384 1 NA NA NA NA NA LTS-040 chr14 22509082 22987977 478896 * character(0) 0.170819972005599 16 0.060999965846985 1.08171324663845 581 0.278329086401533 4 4 0 -6.77204455804622 LTS-040 chr14 22987978 22988826 849 * character(0) NA 0 NA 0.768 1 NA NA NA NA NA LTS-040 chr14 22988827 50044632 27055806 * c(SNORD127, MIR208B, SLC25A21-AS1, LOC100288846, MIR4307, MIR548Y, LINC00645, LOC100506071, LINC00871, LINC00648, NEDD8-MDP1, BCL2L2-PABPN1, MIR4503, MIR548AI, MIR4707, PTCSC3, LINC00609, DHRS2, EFS, IRF9, PRMT5, SEC23A, CEBPE, TM9SF1, CFL2, DHRS4, RIPK3, AP4S1, BAZ1A, EGLN3, DTD2, DHRS1, CMTM5, NA, CMA1, C14orf28, TRAPPC6B, MRPL52, PSMB11, LTB4R, RPL10L, MIPOL1, MDP1, LRFN5, CTSG, DAD1, CLEC14A, FITM1, NA NA NA NA NA NA NA NA NA LTS-040 REM2, MDGA2, NOP9, COCH, SPTSSA, ADCY4, FKBP3, FOXG1, ACIN1, FAM179B, SCFD1, KHNYN, SLC7A8, RALGAPA1, SFTA3, FBXO33, HECTD1, HEATR5A, NGDN, LRP10, NKX2-8, TINF2, CIDEB, IGBP1P1, LINC00639, TSSK4, FAM177A1, GPR33, CHMP4A, STXBP6, STRN3, GZMH, GZMB, FOXA1, DHRS4L2, LINC01551, ARHGAP5, MIR208A, MIA2, MMP14, MYH6, MYH7, NEDD8, NFATC4, NFKBIA, NOVA1, NRL, OXA1L, PAX9, EMC9, PCK2, GMPR2, SLC22A17, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MBIP, PNN, KLHL28, HAUS4, PPP2R3C, PRPF39, C14orf119, RNF31, RBM23, MIS18BP1, DHRS4-AS1, G2E3, EAPP, PRKD1, LTB4R2, PSMA6, PSMB5, SDR39U1, PSME1, PSME2, NYNRIN, HOMEZ, FANCM, SNX6, RABGGTA, BCL2L2, C14orf93, RPS29, ABHD4, NPAS3, CBLN3, CDH24, IL25, SRP54, SSTR1, MIR624, TGM1, NKX2-1, DHRS4L1, THTPA, IPO4, NUBPL, DCAF11, PABPN1, FSCB, BRMS1L, JPH4, INSM2, ARHGAP5-AS1, GEMIN2, AJUBA, ZFHX2, AP1G2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SLC25A21, SLC7A7, CARMIL3, PPP1R3E, NEMF, CPNE6, AKAP6, KIAA0391, REC8) 0.193245587596211 185 0.0639460342761572 0.924240186826807 13171 0.264589233838719 3 3 0 -7.44135746669998 LTS-040 NA NA NA NA LTS-040 chr14 50044633 55604833 5560201 * c(MIR4308, NA, MIR5580, FRMD6-AS2, CNIH1, CDKN3, CGRRF1, FERMT2, WDHD1, MAP4K5, TRIM9, LRR1, KLHDC1, FRMD6, SOCS4, FRMD6-AS1, ABHD12B, LINC01599, NID2, SAMD4A, KLHDC2, GCH1, ATP5S, GMFB, LINC01588, LINC00640, GPR137C, ERO1A, ARF6, LGALS3, MGAT2, ATL1, NIN, C14orf166, POLE2, GNG2, DNAAF2, PSMC6, PTGDR, PTGER2, TXNDC16, PYGL, SAV1, RPL36AL, RPS29, GNPNAT1, BMP4, SOS2, STYX, VCPKMT, L2HGDH, DDHD1, TMX1, NA NA NA NA NA NA NA NA NA LTS-040 CDKL1, NEMF, MAPK1IP1L) 0.187294503403013 68 0.0750759346353385 0.891743129647544 4862 0.269549122777761 3 3 0 -7.12394599791889 LTS-040 NA NA NA NA LTS-040 chr14 55604834 55604836 3 * LGALS3 NA 0 NA 0.568 1 NA NA NA NA NA LTS-040 chr14 55604837 55817177 212341 * c(LGALS3, FBXO34, DLGAP5) 0.268414686284816 7 0.0655838249512644 0.584915734091966 150 0.152524296080508 1 1 0 -7.19615409855188 LTS-040 chr14 55817178 55817180 3 * FBXO34 NA 0 NA 0.982 1 NA NA NA NA NA LTS-040 chr14 55817181 105996341 50179161 * c(MED6, SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, ZBTB42, KTN1-AS1, LOC100129345, LINC00605, LOC100289511, MIR1247, MIR1185-1, MIR1185-2, MIR1260A, MIR1197, OTX2-AS1, MIR1193, MIR4309, MIR3173, LOC100506321, TUNAR, MEG9, SYNJ2BP-COX16, CHURC1-FNTB, MIR4505, MIR203B, MIR4708, MIR4709, MIR4710, MIR4706, MIR2392, DIO2-AS1, HIF1A-AS2, MIR5698, LINC00911, GPHN, VTI1B, FBLN5, BATF, SIVA1, NPC2, AHSA1, EXOC5, NA NA NA NA NA NA NA NA NA LTS-040 CYP46A1, PAPOLA, ACOT2, TMED10, PTPN21, FOXN3, CHGA, C14orf1, IFT43, WDR89, L3HYPDH, AHNAK2, CKB, TRMT61A, SERPINA3, TDRD9, ANKRD9, AK7, IFI27L1, C14orf79, PLD4, ADSSL1, NAA30, GPHB5, NOXRED1, JDP2, ISCA2, ACOT4, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, CRIP1, CRIP2, LINC00239, LINC00637, RDH12, ADAM21P1, GSC, SERPINA12, PRIMA1, PPP1R36, SLC38A6, C14orf37, LOC145474, PTGR2, FAM161B, LRRC74A, ISM2, CEP128, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TTC7B, FAM71D, TMEM229B, ACTN1-AS1, SYNE3, TMEM30B, SAMD15, EML5, DIO2, DIO3, DLST, DYNC1H1, EIF2S1, LINC00638, EIF5, EML1, AKT1, ERH, ESR2, ESRRB, VASH1, ATG14, ZBTB1, SNW1, PCNX1, DAAM1, TTLL5, RCOR1, SYNE2, PACS2, ANGEL1, PPP1R13B, DICER1, FNTB, ZFYVE26, TTC9, FOS, FLRT2, FUT8, NUDT14, LINC00521, SERPINA11, GALC, PLEKHG3, SIPA1L1, DCAF4, KIF26A, TMEM251, PLEK2, TIMM9, TCL6, MLH3, KCNH5, PROX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZDHHC22, TMED8, C14orf178, LOC283585, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, CEP170B, C14orf80, GPX2, FOXN3-AS2, GSTZ1, GTF2A1, BRF1, GPR132, POMT2, HIF1A, ADAM20P1, C14orf39, CCDC85C, ITPK1-AS1, SNORD56B, SERPINA9, HSPA2, HSP90AA1, VSX2, SLC35F4, LRRC9, COX8C, IFI27, ITPK1, JAG2, ASPG, RAB15, PSMA3-AS1, KLC1, ARG2, TBPL2, TOMM20L, SERPINA13P, LINC01550, RTL1, TMEM179, KTN1, HEATR4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FLJ22447, PLEKHD1, FOXN3-AS1, LINC00642, DICER1-AS1, C14orf180, LTBP2, MIR127, MIR134, MIR136, MIR154, MIR203A, MIR299, MARK3, MAX, ATXN3, MAP3K9, ALDH6A1, MNAT1, LINC00238, CCDC88C, TEX21P, MIR323A, MIR337, MIR345, MIR376C, MIR369, MTHFD1, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, MIR382, SIX6, OTX2, COQ6, SERPINA5, FCF1, RDH11, SERPINA10, GLRX5, COX16, DACT1, ATP6V1D, EVL, GSKIP, JKAMP, CINP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DHRS7, ASB2, SIX4, PGF, SERPINA1, SERPINA4, PIGH, ZFYVE1, CPSF2, KCNK10, TMEM260, PPM1A, FBXO34, CDCA4, NRDE2, ATG2B, UBR7, C14orf105, EXD2, VRTN, PPP2R5C, PPP2R5E, SYNJ2BP, SLC39A9, MEG3, FLVCR2, GPATCH2L, PPP4R3A, BTBD7, AP5M1, TDP1, ZNF839, SPATA7, PRKCH, ACTR10, YLPM1, LGMN, PSEN1, KCNK13, PSMA3, CCDC177, C14orf132, PSMC1, DDX24, ADCK1, TMEM63C, PELI2, RHOJ, MIR433, MIR431, MIR329-1, MIR329-2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, GALNT16, PLEKHH1, TRMT5, UNC79, BEGAIN, PPP4R4, ZNF410, NGB, ABCD4, RBM25, RAD51B, MOK, ARID4A, MIR487A, BDKRB1, BDKRB2, RTN1, VIPAS39, SEL1L, SMOC1, MOAP1, ACOT1, ACOT6, IRF2BPL, SRSF5, MPP5, INF2, PCNX4, FUT8-AS1, RPL13AP3, LINC00520, GPR135, LINC00643, SYNDIG1L, RD3L, TEX22, BCL11B, SIX1, SLC8A3, SLC10A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SNAPC1, MIR539, MIR376A2, MIR487B, SPTB, ZFP36L1, SNORA28, SNORA79, MIR411, TGFB3, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, TSHR, CCDC175, LINC01220, VRK1, WARS, XRCC3, YY1, ZBTB25, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, ZC2HC1C, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, BBOF1, TMEM121, DPF3, GPR68, TCL1A, SGPP1, AMN, SLIRP, DNAL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RPS6KL1, SYT16, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, GPR65, STON2, CIPC, NUMB, SERPINA6, ACTN1, ADAM21, ADAM20, DLK1, CCNK, DCAF5, ALKBH1, EIF2B2, PAPLN, FAM181A, BTBD6, EFCAB11, MTA1, CHURC1, ELMSAN1, LIN52, NEK9, EXOC3L4, WDR20, PNMA1, RPS6KA5, TRIP11, NRXN3, AKAP5, SPTLC2, BAG5, C14orf2, ENTPD5, CDC42BPB, TCL1B, RGS6, ACYP1, SUSD6, KIAA0586, AREL1, TECPR2, GOLGA5) 0.193873108311582 729 0.064966419734983 0.918423817026568 38246 0.423742380891995 3 3 0 -7.36899138585723 LTS-040 NA NA NA NA LTS-040 chr14 105996342 105996370 29 * TMEM121 NA 0 NA 1.053 1 NA NA NA NA NA LTS-040 chr14 105996371 106209400 213030 * c(ELK2AP, TMEM121) 0.230225714355914 4 0.160566704726312 1.17603361307805 123 0.274188188783153 3 3 0 -6.81718768345416 LTS-040 chr14 106209401 106232310 22910 * character(0) NA 0 NA 0.932 1 NA NA NA NA NA LTS-040 chr14 106232311 107013436 781126 * c(LINC00226, LINC00221, ADAM6, FAM30A) 0.225195765673089 33 0.0859371246548277 0.857011144435032 535 0.314781324371356 2 2 0 -6.80560243382093 LTS-040 chr14 107013437 107034757 21321 * character(0) NA 0 NA 1.441 1 NA NA NA NA NA LTS-040 chr14 107034758 107179263 144506 * character(0) 0.22068638952016 24 0.131962664900101 1.53082789262505 78 0.570595120940665 7 6 1 -6.73895181679244 LTS-040 chr14 107179264 107198951 19688 * character(0) NA 0 NA 0.9 1 NA NA NA NA NA LTS-040 chr14 107198952 107282973 84022 * character(0) 0.269 1 NA 0.898561790042097 41 0.216142170352937 3 3 0 -5.77253766881981 LTS-040 chr14 107282974 107283157 184 * character(0) NA 0 NA 0.867742545345552 5 0.113801142349275 2 NA NA -5.76450430289765 LTS-040 chr15 20169987 20446043 276057 * character(0) 0.406 1 NA 1.32345511109728 23 0.384861465758897 5 5 0 -5.7662577752581 LTS-040 chr15 20446044 22567047 2121004 * c(POTEB, OR4N4, HERC2P3, LINC01193, OR4M2, OR4N3P, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, REREP3, GOLGA6L6, LOC727924, GOLGA8CP) 0.405517788877945 40 0.0839499202058233 1.5794962806328 283 0.501623438901687 6 3 3 -6.76749576834515 LTS-040 chr15 22567048 22690470 123423 * REREP3 NA 0 NA 0.319 1 NA NA NA NA NA LTS-040 chr15 22690471 29993436 7302966 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-040 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, HERC2P7, GOLGA8DP, LOC100289656, MIR4508, MIR4715, TUBGCP5, NIPA1, PWAR1, CYFIP1, FAM189A1, NPAP1, GABRA5, GABRB3, GABRG3, LOC283683, GOLGA6L1, GOLGA8IP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 APBA2, SNORD109B, SNORD115-1, WHAMMP3, PWAR4, PWARSN, IPW, GOLGA8EP, HERC2P2, GOLGA6L22, HERC2P9, WHAMMP2, NDN, OCA2, LINC00929, MAGEL2, NSMCE3, ATP10A, PDCD6IPP2, GOLGA8S, SNRPN, TJP1, SNORD116-19, GOLGA6L7P, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NIPA2, HERC2, SNURF) 0.409505438998727 70 0.0852027966861828 0.859779690715848 2965 0.239890286702954 2 1 1 -7.38720599308281 LTS-040 NA NA NA NA LTS-040 chr15 29993437 43910306 13916870 * c(SRP14-AS1, ANKRD63, JMJD7, PLA2G4B, WHAMMP1, LOC100288637, MIR1233-2, MIR4310, MIR3942, RAD51-AS1, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHP1, CHST14, CHRM5, OIP5, CHRNA7, CKMT1B, TGM7, PLA2G4E, LOC145845, TMCO5A, ZSCAN29, TTBK2, CDAN1, STRC, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, ADAL, EXD1, FSIP1, RHOV, UBR1, EPB42, BAHD1, FAN1, MAPKBP1, GOLGA8A, RTF1, MGA, VPS39, CCNDBP1, LPCAT4, NA NA NA NA NA NA NA NA NA LTS-040 PLA2G4F, LRRC57, NUTM1, GANC, TMEM87A, RPAP1, DKFZP434L187, GCHFR, GREM1, RPUSD2, TUBGCP4, LOC283710, FAM98B, PLA2G4D, EHD4, FMN1, MRPL42P5, ITPKA, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, LTK, MIR211, MAP1A, MEIS2, TRPM1, GOLGA8B, EIF2AK4, NDUFAF1, NUSAP1, EMC4, SPTBN5, KLF13, PLCB2, DLL4, INO80, PPP1R14D, MTMR10, ZNF770, HAUS2, RMDN3, DNAJC17, NOP10, EMC7, PAK6, KNL1, AVEN, GJD2, STARD9, VPS18, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RAD51, RYR3, C15orf62, ZNF106, SCG5, C15orf56, PHGR1, GOLGA8T, SPINT1, SRP14, MIR626, MIR627, ACTC1, BUB1B, THBS1, TJP1, TP53BP1, ANP32AP1, GOLGA8O, OIP5-AS1, TYRO3, CHAC1, KATNBL1, TMEM62, CAPN3, C15orf41, ZFYVE19, DISP2, JMJD7-PLA2G4B, SNAP23, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, TGM5, PPIP5K1, AQR, ARHGAP11A, LCMT2, SLC12A6) 0.408037934702335 251 0.105049165040457 0.803687263544361 13826 0.244981761629384 2 1 1 -6.8624405567538 LTS-040 NA NA NA NA LTS-040 chr15 43910307 43920698 10392 * STRC NA 0 NA 0.116 1 NA NA NA NA NA LTS-040 chr15 43920699 43922566 1868 * STRC 0.342420245706784 3 0.0395516539898565 0.385031228795537 48 0.362430095362985 18 12 6 -6.79180156838161 LTS-040 chr15 43922567 43922714 148 * STRC NA 0 NA 0.909 1 NA NA NA NA NA LTS-040 chr15 43922715 81270420 37347706 * c(NR2E3, MIR147B, DNM1P35, GABPB1-AS1, LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, HCN4, ADPGK-AS1, LOXL1-AS1, MIR1272, MIR1266, MIR1282, NDUFAF4P1, MIR548H4, MIR2116, MIR4311, MIR4312, MIR4313, IQCH-AS1, ST20-MTHFS, SERF2-C15ORF63, DYX1C1-CCPG1, MIR4513, MIR4716, MIR4713, MIR4511, MIR4712, SCAMP2, SNUPN, PDCD7, MYZAP, MIR5003, TSPAN3, FEM1B, SERF2, ADAM10, DENND4A, SNAPC5, HMG20A, CORO2B, CIB2, MTHFS, ARID3B, NA NA NA NA NA NA NA NA NA LTS-040 GNB5, ARPP19, CLPX, MORF4L1, SLC27A2, ADAMTS7, CASC4, CHRNA3, CHRNA5, LACTB, CHRNB4, DIS3L, CATSPER2, CLK3, LEO1, SENP8, MTFMT, SLC51B, HIGD2B, TMEM266, HYKK, CRABP1, TRIM69, CSK, TERB2, NA, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, DRAIC, C15orf61, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CYP19A1, STRC, TBC1D21, DYX1C1, ODF3L1, DUT, SCAMP5, FAM227B, CT62, GRAMD2, MGC15885, LCTL, PATL2, ETFA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 FAH, FBN1, FGF7, ITGA11, CEP152, ZNF609, TBC1D2B, MESDC2, ACSBG1, KIAA1024, DMXL2, TMED3, AP4E1, DAPK2, EID1, SPESP1, LINGO1-AS1, GABPB1, LYSMD2, WDR72, SNX33, HYPK, ARIH1, GALK2, SIN3A, ULK3, GLCE, PYGO1, BLOC1S6, FBXO22, GATM, NPTN, FOXB1, HMGN2P46, SLC24A5, PRTG, LINC00926, EWSAT1, REC114, ST20-AS1, LINC00927, LOC283731, FBXL22, SCG3, PDIA3, GTF2A2, TMOD3, TMOD2, ANXA2, HDC, HEXA, ONECUT1, TMEM202, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 IDH3A, GLDN, GOLGA6A, RBPMS2, ANKDD1A, IREB2, AQP9, ISLR, USP50, TEX9, TNFAIP8L3, C2CD4B, C15orf59, KBTBD13, UBAP1L, SKOR1, ANKRD34C, LIPC, SHC4, CTXN2, ST20, LOXL1, DUOXA2, MIR184, MIR190A, SMAD3, SMAD6, MAN2C1, LINC00593, MFAP1, MPI, CATSPER2P1, UNC13C, UBL7-AS1, MYO1E, MYO5A, MYO9A, NEDD4, NEO1, OAZ2, SCAPER, DUOX2, MYEF2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, CTDSPL2, RAB8B, PKM, PML, DUOX1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CSNK1G1, ZFAND6, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, LRRC49, PAQR5, CKMT1A, DPP8, RPP25, COMMD4, PARP16, TIPIN, CLN6, ZWILCH, FLJ10038, UACA, IMP3, LARP6, MNS1, DNAJA4, GOLGA6B, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, B2M, PSMA4, C15orf39, THAP10, PARP6, DTWD1, FAM219B, CEMIP, ISLR2, IGDCC4, PTPN9, SQRDL, ABHD17C, BBS4, RAB27A, RASGRF1, CPLX3, SNORD16, SNORD18A, SNORD18B, SNORD18C, RCN2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 BCL2A1, PPCDC, CELF6, RORA, RPL4, RPLP1, SERINC4, STRA6, EIF3J-AS1, LOC645752, SH2D7, LOC646938, IQCH, ISL2, RFX7, GOLGA6C, GOLGA6D, SLC12A1, BNIP2, SNX1, HSP90AB4P, SORD, SCARNA14, FBXO22-AS1, MIR549A, MIR628, MIR629, MIR630, MIR631, TCF12, TLE3, TPM1, PIN4P1, LOC729739, ANKRD34C-AS1, TYRO3P, CA12, SLC30A4, SPATA5L1, NOX5, NEIL1, ICE2, AAGAB, LMAN1L, SLTM, PEAK1, SNX22, THSD4, ATP8B4, WDR76, SEMA6D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ANP32A-IT1, HEXA-AS1, PIF1, CCDC33, EDC3, SPG11, ELL3, PLEKHO2, WDR61, CD276, ANP32A, POLR2M, VWA9, LINC00597, ADPGK, APH1B, TLN2, FAM96A, C15orf48, MEGF11, SEMA7A, CILP, SPPL2A, LINGO1, CGNL1, FRMD5, UBL7, PIAS1, EIF3J, RAB11A, ALDH1A2, HERC1, PSTPIP1, SHF, DUOXA1, USP8, CCNB2, LOC91450, SLC28A2, CALML4, SLC24A1, CCPG1, GCNT3, LDHAL6B, UBE2Q2, COPS2, TRIP4, COX5A, STOML1, PIGB, KIF23, IGDCC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SECISBP2L, KIAA0101, ARNT2, USP3) 0.400479492557882 546 0.102275939673705 0.805114639261532 32327 0.229955876835549 2 1 1 -7.13919560870163 LTS-040 NA NA NA NA LTS-040 chr15 81270421 81565604 295184 * c(MIR4514, CFAP161, MESDC2, IL16, MESDC1) NA 0 NA 0.766589220958823 223 0.173531841470204 2 NA NA -5.76643404960287 LTS-040 chr15 81565605 81571041 5437 * IL16 NA 0 NA 1.325 1 NA NA NA NA NA LTS-040 chr15 81571042 81582868 11827 * IL16 0.246 1 NA 1.80770113376892 27 0.41180366245367 7 7 0 -5.76442269583372 LTS-040 chr15 81582869 86311776 4728908 * c(NA, UBE2Q2P2, NA, UBE2Q2L, LINC00933, MIR4515, AKAP13, C15orf40, WHAMM, FSD2, SEC11A, CPEB1-AS1, ACTG1P17, SAXO2, LOC338963, TMC3, IL16, GOLGA6L5P, GOLGA2P7, UBE2Q2P1, ADAMTS7P1, GOLGA6L9, DNM1P41, LOC440300, NMB, HDGFRP3, PDE8A, BTBD1, TM6SF1, SCAND2P, ZSCAN2, ADAMTSL3, ALPK3, LOC642423, GOLGA6L4, KLHL25, CPEB1, SH3GL3, BNC1, GOLGA6L10, EFTUD1P1, SCARNA15, EFL1, STARD5, AP3B2, FAM103A1, MEX3B, WDR73, SLC28A1, NA NA NA NA NA NA NA NA NA LTS-040 HOMER2, ZNF592) 0.263648150069829 86 0.0720622935036545 1.5996604625984 3336 0.400255881956005 6 5 1 -6.76603470219362 LTS-040 NA NA NA NA LTS-040 chr15 86311777 89021300 2709524 * c(MIR1276, AGBL1, LINC00052, MRPL46, NTRK3-AS1, NTRK3, KLHL25, MRPS11, AGBL1-AS1) 0.269420533248484 7 0.0292843205243254 1.75667281492227 724 0.382952461827225 6 5 1 -7.17419258523652 LTS-040 chr15 89021301 89021377 77 * MRPS11 NA 0 NA 1.319 1 NA NA NA NA NA LTS-040 chr15 89021378 89393365 371988 * c(MIR1179, MIR3529, ACAN, ISG20, MIR7-2, DET1, AEN, MRPS11) 0.257973856560819 5 0.148678512233611 1.39591390608065 247 0.484720844636621 6 5 1 -6.75011653182105 LTS-040 chr15 89393366 89398105 4740 * ACAN 0.331 1 NA 1.47324096606972 31 0.275429904436799 5 5 0 -5.76457620459898 LTS-040 chr15 89398106 99715352 10317247 * c(LINC00930, MIR1469, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR4714, SPATA8-AS1, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, PGPEP1L, LINC00924, C15orf32, HAPLN3, MESP2, SPATA8, ACAN, FES, SYNM, GABARAPL3, MIR9-3HG, VPS33B, SLCO3A1, LINC00928, FAM169B, ANPEP, IDH2, ZNF774, IGF1R, ARPIN, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, LINC01197, MIR9-3, MAN2A2, MFGE8, TTLL13P, LOC440311, FURIN, NGRN, RHCG, NA NA NA NA NA NA NA NA NA LTS-040 PLIN1, POLG, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, NR2F2-AS1, CRTC3, TTC23, NR2F2, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, ARRDC4, LINC00923, SV2B) 0.316275198858639 144 0.0692468922777917 1.36127616733579 6174 0.345470441484983 5 4 1 -6.87431256530387 LTS-040 NA NA NA NA LTS-040 chr15 99715353 99759273 43921 * TTC23 NA 0 NA 1.42905797405763 17 0.392980204560574 5 NA NA -5.76463269156006 LTS-040 chr15 99759274 99761865 2592 * TTC23 NA 0 NA 0.794 1 NA NA NA NA NA LTS-040 chr15 99761866 99796089 34224 * c(LRRC28, TTC23) 0.462 1 NA 0.981573390535569 17 0.305787688264452 3 3 0 -5.76441063971779 LTS-040 chr15 99796090 99816898 20809 * c(LRRC28, HSP90B2P) 0.373 1 NA 0.76455531647898 34 0.187197706405347 2 2 0 -5.76457040805705 LTS-040 chr15 99816899 99825817 8919 * LRRC28 NA 0 NA 1.404 1 NA NA NA NA NA LTS-040 chr15 99825818 100215736 389919 * c(LRRC28, MEF2A) 0.468 1 NA 1.33940921652682 168 0.261950386708913 5 5 0 -5.76721158138301 LTS-040 chr15 100215737 100230353 14617 * MEF2A NA 0 NA 0.604 1 NA NA NA NA NA LTS-040 chr15 100230354 102516492 2286139 * c(FAM138E, LOC100507472, TARSL2, ASB7, LYSMD4, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, OR4F4, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, SNRPA1, LRRK1, TM2D3) 0.420478669481476 82 0.0836029504701302 0.921165250415852 1914 0.242964657907637 3 2 1 -6.89067423197332 LTS-040 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.143 1 NA NA NA NA NA LTS-040 chr16 81704 96405 14702 * character(0) 0.482 1 NA 1.19081549935071 3 0.425749143667176 4 4 0 -5.76441478847035 LTS-040 chr16 96406 1918094 1821689 * c(LOC100134368, MIR3177, MIR3176, MIR5587, NUBP2, MSLN, STUB1, MRPL28, RPUSD1, TSR3, WFIKKN1, CLCN7, CCDC78, PRR35, FBXL16, SSTR5-AS1, WDR90, EME2, MAPK8IP3, TPSD1, MEIOB, TPSG1, DECR2, NHLRC4, C16orf91, HAGH, HBA1, HBA2, HBM, HBQ1, HBZ, SOX8, JMJD8, IGFALS, PRR25, C1QTNF8, PTX4, ARHGDIG, MPG, NME3, NME4, POLR3K, GNG13, LUC7L, CRAMP1, RAB40C, TMEM8A, CHTF18, RHBDF1, NARFL, LINC00235, TPSB2, CCDC154, NA NA NA NA NA NA NA NA NA LTS-040 PDIA2, UNKL, LMF1, FAM173A, MRPS34, CAPN15, SSTR5, TPSAB1, MIR662, UBE2I, METRN, SNRNP25, TMEM204, NPRL3, FAHD1, AXIN1, FAM234A, WDR24, HAGHL, METTL26, MCRIP2, GNPTG, RGS11, CACNA1H, BAIAP3, RHOT2, RHBDL1, HN1L, SPSB3, PIGQ, RAB11FIP3, IFT140, TELO2) 0.37915395722502 228 0.0691411271202866 1.1424947432793 5880 0.282792248369504 4 2 2 -7.00691575243653 LTS-040 NA NA NA NA LTS-040 chr16 1918095 1961551 43457 * c(MEIOB, HS3ST6, LINC00254) 0.258 1 NA 1.10365845736266 7 0.186568001135294 4 4 0 -5.76769394985208 LTS-040 chr16 1961552 1968131 6580 * HS3ST6 NA 0 NA 1.12872853309404 19 0.162606708104149 4 NA NA -5.76469609866565 LTS-040 chr16 1968132 1988238 20107 * c(MSRB1, HS3ST6) NA 0 NA 1.448 1 NA NA NA NA NA LTS-040 chr16 1988239 2650578 662340 * c(MIR940, MIR1225, MIR3178, MIR3677, MIR3180-5, MIR4717, MIR4516, TBL3, RNPS1, NOXO1, RNF151, ECI1, DNASE1L2, E4F1, ABCA3, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, NDUFB10, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, ATP6V0C, PKD1, SNORA10, TBC1D24, CASKIN1, RPL3L, RPS2, MLST8, ABCA17P, SNORA78, TSC2, SNHG9, CEMP1, C16orf59, TRAF7, CCNF, ZNF598, SYNGR3, SLC9A3R2) 0.310424324724654 50 0.0613905663164387 1.26078606452616 2269 0.338776103552128 4 3 1 -6.81216759346512 LTS-040 chr16 2650579 2650690 112 * PDPK1 NA 0 NA 0.539 1 NA NA NA NA NA LTS-040 chr16 2650691 2747930 97240 * c(ERVK13-1, PDPK1, KCTD5, FLJ42627, LOC652276) 0.429 1 NA 0.91448599420611 135 0.381651997082064 3 3 0 -5.76633193883612 LTS-040 chr16 2747931 6533549 3785619 * c(LOC100128770, SRRM2-AS1, MTRNR2L4, LINC01569, NAGPA-AS1, CORO7-PAM16, ZNF263, TRAP1, PRSS21, FLYWCH2, VASN, ADCY9, ZG16B, PRSS30P, PAQR4, ANKS3, UBALD1, SEPT12, CREBBP, ZNF597, BICDL2, C16orf89, C16orf71, DNASE1, EEF2KMT, NLRC3, CLUAP1, MGRN1, SRRM2, PRSS33, ZNF500, OR1F2P, LINC00514, LINC00921, UBN1, CDIP1, HMOX2, C16orf96, PRSS41, MEFV, SMIM22, OR1F1, OR2C1, PAM16, NAGPA, TNFRSF12A, KCTD5, RBFOX1, NA NA NA NA NA NA NA NA NA LTS-040 ZSCAN32, PPL, HCFC1R1, ALG1, NMRAL1, SRL, PRSS22, MMP25, C16orf90, TCEB2, TFAP4, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, THOC6, KREMEN2, CORO7, ROGDI, NAA60, ZNF205-AS1, PRSS27, FLYWCH1, NUDT16L1, SLX4, GLYR1, GLIS2, ZSCAN10, CLDN6, CLDN9, PKMYT1, DNAJA3, TIGD7, IL32, SEC14L5) 0.323379094841916 152 0.0930004581780728 1.2583258909495 5030 0.469797311468777 4 3 1 -6.77964461833777 LTS-040 NA NA NA NA LTS-040 chr16 6533550 7657373 1123824 * RBFOX1 0.374 1 NA 1.1310498780544 61 0.192832248227012 4 4 0 -5.79579737561804 LTS-040 chr16 7657374 8729107 1071734 * c(TMEM114, RBFOX1, METTL22) 0.476048358179671 2 0.0275771644662754 1.17219879761101 140 0.400593266300295 4 2 2 -8.26591878475072 LTS-040 chr16 8729108 23227355 14498248 * c(MIR365A, RRN3P3, NPIPB5, LOC100190986, SMG1P3, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, MIR548AA2, MIR4718, SNX29P1, COQ7, IGSF6, CDR2, ERI2, RMI2, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, CRYM, VWA3A, OTOA, TEKT5, ITPRIPL2, ABAT, EMP2, PDILT, ERCC4, PDXDC1, SMG1, NPIPB3, ARL6IP1, CLEC16A, NOMO1, CARHSP1, MPV17L, PDZD9, ANKS4B, TMEM186, RSL1D1, GP2, NOMO2, DEXI, GRIN2A, C16orf72, ZC3H7A, NA NA NA NA NA NA NA NA NA LTS-040 GSPT1, EEF2K, PKD1P1, ACSM2B, ABCC6, SLC7A5P2, BCAR4, KNOP1, CRYM-AS1, NOMO3, CIITA, ABCC1, MYH11, NUBP1, PARN, TXNDC11, METTL9, BFAR, GDE1, GPRC5B, SYT17, PMM2, RRN3, NDE1, ACSM5, CPPED1, DNAH3, THUMPD1, POLR3E, PRM1, PRM2, C16orf62, TMEM159, LYRM1, MIR193B, USP31, MKL2, PRM3, TNFRSF17, MIR484, RPS15A, ACSM3, SCNN1G, SMG1P1, XYLT1, NPIPA3, ABCC6P1, LOC653786, MIR548D2, TNP2, CLEC19A, SHISA9, ABCC6P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RRN3P1, C16orf52, UMOD, UQCRC2, ZP2, TVP23A, USP7, METTL22, TMC5, TMC7, ATF7IP2, LOC81691, SNN, PLA2G10, SOCS1, C16orf45, SNX29, NPIPA1, LITAF, KIAA0430, CCP110, HS3ST2) 0.418317779018824 198 0.0727492071182772 0.999029382417334 9433 0.260474382053103 3 2 1 -6.85814003404298 LTS-040 NA NA NA NA LTS-040 chr16 23227356 23227359 4 * SCNN1G NA 0 NA 1.14 1 NA NA NA NA NA LTS-040 chr16 23227360 23227449 90 * SCNN1G 0.476394336189161 3 0.0276103845198384 1.84101057784168 3 0.32625807780549 19 10 9 -8.2756952848389 LTS-040 chr16 23227450 23360199 132750 * c(SCNN1B, SCNN1G) 0.338 1 NA 1.11244610747407 36 0.379425262942164 4 4 0 -5.76628987250756 LTS-040 chr16 23360200 28608292 5248093 * c(LCMT1-AS2, CACNG3, ERN2, SGF29, SLC5A11, CLN3, EARS2, GSG1L, C16orf82, NSMCE1, GGA2, XPO6, KIAA0556, IL27, NUPR1, TNRC6A, IL21R-AS1, GTF3C1, ZKSCAN2, AQP8, IL4R, SBK1, FLJ21408, NDUFAB1, IL21R, LCMT1, PLK1, ARHGAP17, LOC554206, PRKCB, APOBR, UBFD1, RBBP6, SCNN1B, CHP2, SULT1A2, PALB2, KDM8, DCTN5, COG7, HS3ST4) 0.343661043455604 98 0.078901337106952 1.15579553318163 3596 0.299077733341405 4 3 1 -6.76374226757089 LTS-040 chr16 28608293 28608341 49 * SULT1A2 0.38 1 NA 0.539 1 NA NA NA NA NA LTS-040 chr16 28608342 28734844 126503 * c(SULT1A2, SULT1A1) 0.403018925458748 16 0.0741761136305572 0.83106660359275 104 0.40750869493191 3 2 1 -6.75905034988182 LTS-040 chr16 28734845 32893984 4159140 * c(CLUHP3, ATP2A1-AS1, MIR762, SLX1B-SULT1A4, MIR4519, MIR4721, MIR4518, MIR4517, PYCARD-AS1, TMEM265, BCKDK, ZNF267, CD2BP2, CDIPT, SRCAP, CORO1A, PRRT2, ATXN2L, STX1B, ZNF689, ZNF720, TMEM219, COX6A2, C16orf92, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, ALDOA, SEPHS2, ZNF629, QPRT, FUS, KCTD13, ASPHD1, SH2B1, TBC1D10B, PYDC1, SEZ6L2, LAT, C16orf54, INO80E, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, NA NA NA NA NA NA NA NA NA LTS-040 ITGAD, ITGAL, ITGAM, ITGAX, KIF22, SLC6A10P, LOC390705, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, YBX3P1, NA, SULT1A4, ATP2A1, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, PPP4C, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, SLC5A2, RRN3P2, ZG16, ZNF747, SPN, SNORA30, STX4, SULT1A3, TBX6, TGFB1I1, TUFM, TP53TG3D, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, PAGR1, ZNF768, ZNF668, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ARMC5, RABEP2, HSD3B7, SLC7A5P1, YPEL3, FAM57B, SPNS1, KAT8, DOC2A, HIRIP3, NFATC2IP, CCDC189, ZNF764, BCL7C, CD19, ORAI3, TAOK2, ZNF646, SETD1A, RNF40, MVP) 0.365048700629526 76 0.0695986526891171 1.14562731976951 6702 0.254063967199938 4 3 1 -6.90921519810376 LTS-040 NA NA NA NA LTS-040 chr16 32893985 32896544 2560 * c(SLC6A10P, LOC390705) NA 0 NA 0.777 1 NA NA NA NA NA LTS-040 chr16 32896545 33425055 528511 * LOC390705 NA 0 NA 0.632702154358632 43 0.38007345708379 1 NA NA -5.77981039326945 LTS-040 chr16 33425056 33500841 75786 * character(0) NA 0 NA 1.197 1 NA NA NA NA NA LTS-040 chr16 33500842 34256829 755988 * LINC00273 0.298277963439385 76 0.113787857398002 0.926714049285362 204 0.331218509817938 2 2 0 -6.98005557210352 LTS-040 chr16 34256830 34682380 425551 * c(LINC01566, UBE2MP1) NA 0 NA 1.1802355768421 109 0.266667448074798 4 NA NA -5.76441275965696 LTS-040 chr16 46508169 46584362 76194 * ANKRD26P1 NA 0 NA 1.00931997184358 68 0.315664440963581 3 NA NA -5.76480644967989 LTS-040 chr16 46584363 46584429 67 * ANKRD26P1 0.437 1 NA 1.547 1 NA NA NA NA NA LTS-040 chr16 46584430 47188490 604061 * c(DNAJA2, ANKRD26P1, ORC6, C16orf87, VPS35, SHCBP1, NETO2, GPT2, MYLK3) 0.312548950998377 5 0.172439264670202 1.32432403436348 785 0.29641577903046 5 4 1 -6.75685780172298 LTS-040 chr16 47188491 47188494 4 * character(0) NA 0 NA 1.61 1 NA NA NA NA NA LTS-040 chr16 47188495 47684891 496397 * c(PHKB, ITFG1) 0.291 1 NA 1.84631433732801 200 0.374771120470473 7 7 0 -5.76754546649691 LTS-040 chr16 47684892 47694406 9515 * PHKB NA 0 NA 2.357 1 NA NA NA NA NA LTS-040 chr16 47694407 48396870 702464 * c(LOC100507577, MIR548AE2, PHKB, SIAH1, LONP2, ABCC11, ABCC12) 0.157157697551097 12 0.0610098725244902 2.38152533689682 602 0.800205094447822 11 10 1 -6.74149809097287 LTS-040 chr16 48396871 48643778 246908 * c(LOC100507577, MIR548AE2, SIAH1, N4BP1) NA 0 NA 2.32515377396348 98 0.498165688636558 10 NA NA -5.7646689020002 LTS-040 chr16 48643779 49315688 671910 * c(CBLN1, N4BP1) 0.388 1 NA 1.45003043168179 53 0.40659004379784 5 5 0 -5.77066827298778 LTS-040 chr16 49315689 49559436 243748 * c(C16orf78, ZNF423, CBLN1) 0.292903226567774 2 0.0381837661840736 1.40445091218239 55 0.387172674829565 5 4 1 -6.7712395950681 LTS-040 chr16 49559437 49660065 100629 * ZNF423 NA 0 NA 0.627 1 NA NA NA NA NA LTS-040 chr16 49660066 70154614 20494549 * c(CDH3, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00919, LINC00920, CKLF-CMTM1, CDH8, CDH11, CDH16, NUTF2, IRX5, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, ADCY7, CMTM1, NRN1L, CMTM3, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, TMED6, CTRL, CYLD, NQO1, DYNC1LI2, AGRP, E2F4, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, CES3, ARL2BP, EDC4, PLA2G15, CNEP1R1, NA NA NA NA NA NA NA NA NA LTS-040 PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, C16orf97, LOC388282, C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, POLR2C, PRMT7, DUS2, CHTF8, LPCAT2, HEATR3, PDPR, SLC38A7, OGFOD1, LRRC36, FBXL8, SMPD3, DOK4, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, PDF, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, GINS3, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SLC12A4, SNTB2, SNORA46, SNORA50A, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, CYB5B, GFOD2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, B3GNT9, UTP4, NKD1, CBFB, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, ADGRG1, CCDC102A, NUP93, HERPUD1, CDH1) 0.406815674543016 202 0.0797037455816899 0.746902780298659 14502 0.922752273926127 2 1 1 -6.79505406080738 LTS-040 NA NA NA NA LTS-040 chr16 70154615 70161182 6568 * c(CLEC18C, PDPR) NA 0 NA 0.207 1 NA NA NA NA NA LTS-040 chr16 70161183 70211364 50182 * c(CLEC18C, PDPR) 0.364904133293908 2 0.183140656327316 0.473236734609553 107 0.148735763282203 1 1 0 -6.81437959708702 LTS-040 chr16 70211365 70219715 8351 * CLEC18C NA 0 NA 1.341 1 NA NA NA NA NA LTS-040 chr16 70219716 70874094 654379 * c(SNORD111B, VAC14-AS1, SMG1P7, LOC100506083, DDX19B, EXOSC6, IL34, AARS, FUK, SF3B3, COG4, CLEC18C, HYDIN, DDX19A, VAC14, ST3GAL2, SNORD111, MTSS1L) 0.425905816164342 11 0.0455719211796036 0.733714385387469 1244 0.16478310800665 2 1 1 -6.78879599787922 LTS-040 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 1.087 1 NA NA NA NA NA LTS-040 chr16 70883627 71209683 326057 * HYDIN 0.366189795942639 82 0.0602696053056404 1.04185789911654 560 0.25009741723239 3 2 1 -6.85139031025895 LTS-040 chr16 71209684 90109711 18900028 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, SNORA70D, MIR3182, LINC01568, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, CHST4, MPHOSPH6, EMC8, TUBB3, CFDP1, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, AP1G1, ADAMTS18, AFG3L1P, DHODH, NA NA NA NA NA NA NA NA NA LTS-040 DPEP1, SNAI3-AS1, LINC00311, LDHD, MLKL, ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, PHLPP2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, GLG1, LINC00304, HCCAT5, LOC283922, NUDT7, ANKRD11, OSGIN1, HP, HPR, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, ATXN1L, PKD1L3, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CTRB2, MVD, ZFHX3, CLEC18B, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, HYDIN, DEF8, TXNL4B, BANP, RFWD3, ZNF821, ZDHHC7, CMTR2, CENPN, CMC2, PSMD7, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, TAT, SNORD71, LINC00917, GAS8-AS1, ZNF19, ZNF23, CA5A, DBNDD1, FA2H, CALB2, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, PMFBP1, DYNLRB2, HSDL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, MARVELD3, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, DHX38, IST1, ATP2C2) 0.406122025942009 421 0.0734188046755799 0.745891647323187 12882 0.271132392236558 2 1 1 -7.08424613196797 LTS-040 NA NA NA NA LTS-040 chr16 90109712 90161242 51531 * c(URAHP, PRDM7, GAS8) NA 0 NA 0.716548134107427 120 0.121104704738519 2 NA NA -5.77998257207189 LTS-040 chr17 6004 62646 56643 * c(DOC2B, RPH3AL) 0.275 1 NA 0.722645488268467 47 0.224456181120711 2 2 0 -5.76846800692781 LTS-040 chr17 62647 15469172 15406526 * c(MIR744, LOC100128288, C17orf107, LOC100130950, DBIL5P, LINC00675, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, MAGOH2P, RNASEK-C17orf49, TMEM256-PLSCR3, TVP23C-CDRT4, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4731, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, COX10-AS1, TMEM220-AS1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, NA NA NA NA NA NA NA NA NA LTS-040 USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, COX10, CLDN7, CRK, DNAH2, RTN4RL1, CDRT15, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DNAH9, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, TVP23C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, VMO1, LOC284023, LINC00324, LINC00670, CDRT4, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, TMEM220, SHISA6, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MNT, MIR324, ASPA, MYH1, MYH2, MYH3, MYH4, MYH8, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, PMP22, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, ADPRM, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 RCVRN, ELAC2, RPA1, RPL26, SCO1, SRR, MAP2K4, NXN, SLC35G6, RNF222, PIRT, TEKT3, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, LOC728392, UBE2G1, TRPV1, YWHAE, ZNF18, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NAA38, NEURL4, ZNF594, HES7, SPATA22, MGC12916, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, MYOCD, CDRT7, CDRT15P1, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, CD68, ACAP1, KIAA0753, SGSM2, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.24261564186093 440 0.0771787572222425 0.811691818600762 19455 0.225251969875358 2 2 0 -6.99371939289303 LTS-040 NA NA NA NA LTS-040 chr17 15469173 15532467 63295 * c(TRIM16, CDRT1) 0.267591216759187 2 0.0650538238691624 0.624709425951878 196 0.242175260779343 2 2 0 -6.8360520580921 LTS-040 chr17 15532468 17399332 1866865 * c(FAM106CP, MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, NA, USP32P1, CENPV, FLCN, PLD6, MPRIP, TNFRSF13B, SNORD49A, TBC1D26, LRRC75A, KRT16P2, MEIS3P1, TRPV2, RASD1, TTC19, MED9, NT5M, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, COPS3, PIGL, NCOR1, CCDC144A) 0.205311455243887 42 0.0698708947129683 0.827810103800255 2042 0.357868133235572 2 2 0 -6.95102677700225 LTS-040 chr17 17399333 21188344 3789012 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, PEMT, FBXW10, RAI1, GRAP, AKAP10, MIEF2, SLC5A10, SMCR5, SMCR8, TOM1L2, SLC47A2, TRIM16L, DRG2, ALDH3A1, USP32P2, ALDH3A2, EPN2, FOXO3B, FLII, USP22, TBC1D28, CDRT15L2, NATD1, DHRS7B, B9D1, CCDC144B, LGALS9B, CCDC144NL, KRT17P5, CCDC144CP, LLGL1, GRAPL, MFAP4, TVP23B, MYO15A, RASD1, ALKBH5, SLC47A1, MAPK7, MAP2K3, PRPSAP2, FAM83G, KRT16P3, EVPLL, SHMT1, LGALS9C, NA NA NA NA NA NA NA NA NA LTS-040 SREBF1, SNORA59A, MIR33B, TOP3A, KRT16P1, ZNF286B, RNF112, GID4, FAM106A, DRC3, TMEM11, ATPAF2, SPECC1, ULK2) 0.219977881823473 90 0.0733838470900295 0.924567564019744 4589 0.24405800133486 3 3 0 -6.92701847955361 LTS-040 NA NA NA NA LTS-040 chr17 21188345 21194769 6425 * MAP2K3 0.42 1 NA 0.698583754886539 7 0.324174776492999 2 2 0 -5.76486567011774 LTS-040 chr17 21194770 21194852 83 * MAP2K3 0.373905644331287 5 0.0342417873365278 0.782671222809471 7 0.147017491670695 6 4 2 -6.73893736570513 LTS-040 chr17 21194853 21194859 7 * MAP2K3 0.34 1 NA 1.01 1 NA NA NA NA NA LTS-040 chr17 21194860 22066835 871976 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51, KCNJ12, MAP2K3) 0.352392378541994 123 0.0790169365568433 1.05794936785668 447 0.323963963090846 4 3 1 -6.83674762066952 LTS-040 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.804 1 NA NA NA NA NA LTS-040 chr17 25620838 25630388 9551 * c(MIR4522, WSB1) 0.166 1 NA 1.06317420186114 17 0.248116922745993 3 3 0 -5.76502640143305 LTS-040 chr17 25630389 27050713 1420325 * c(SPAG5-AS1, MIR4723, NARR, SPAG5, SLC46A1, SGK494, TMEM199, PROCA1, LYRM9, ALDOC, SARM1, PPY2P, PYY2, POLDIP2, WSB1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, TMEM97, KRT18P55, LGALS9, TBC1D3P5, NOS2, NLK, RPL23A, SDF2, SEBOX, SUPT6H, TNFAIP1, VTN, RAB34, FOXN1, KSR1, IFT20, SLC13A2, UNC119, PIGS, KIAA0100) 0.179943824083382 31 0.0547946312416027 1.04559032156701 2366 0.25480430207868 3 3 0 -6.83441926035055 LTS-040 chr17 27050714 27050718 5 * c(SNORD4B, RPL23A) NA 0 NA 1.288 1 NA NA NA NA NA LTS-040 chr17 27050719 34432586 7381868 * c(MIR365B, MIR3184, AA06, SLFN12L, RAD51L3-RFFL, MIR4523, MIR4724, MIR4733, MIR451B, MIR4732, MIR4725, CCT6B, LRRC37B, ABHD15, TLCD1, RFFL, TMEM132E, SPACA3, SEZ6, ANKRD13B, CPD, CRYBA1, C17orf50, SLFN13, SLC35G3, UNC45B, DHRS13, LRRC37BP1, SLFN5, RHBDL3, AP2B1, RDM1, EVI2A, EVI2B, FLOT2, SUZ12, GAS2L2, HEATR9, TMEM98, TBC1D29, ERAL1, SNORD4B, NEK8, GIT1, SLFN14, CCL15-CCL14, EFCAB5, TMIGD1, LIG3, MYO18A, NA NA NA NA NA NA NA NA NA LTS-040 ASIC2, C17orf102, MIR144, MIR193A, SUZ12P1, MYO1D, NF1, MIR423, OMG, ARGFXP2, DPRXP4, PIPOX, CRLF3, PEX12, NLE1, FNDC8, SLFN12, RHOT1, COPRS, FAM222B, ADAP2, UTP6, LYZL6, PSMD11, MIR451A, NUFIP2, TAOK1, PHF12, RAD51D, RPL23A, CCL1, CCL2, CCL3, CCL4, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL18, CCL23, C17orf75, BLMH, SH3GL1P1, SH3GL1P2, SLC6A4, SNORD7, MIR632, ZNF207, MMP28, TEFM, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ATAD5, TAF15, NSRP1, RNF135, RAB11FIP4, CORO6, SSH2, CDK5R1, TP53I13, ZNF830, SLFN11, RASL10B, TIAF1, GOSR1, TRAF4) 0.145280662732513 100 0.0556642850152827 1.13528370861823 7818 0.336955825573087 4 4 0 -6.84475341889511 LTS-040 NA NA NA NA LTS-040 chr17 34432587 34432660 74 * CCL4 NA 0 NA 1.006 1 NA NA NA NA NA LTS-040 chr17 34432661 34640930 208270 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.712997219547555 38 0.515379546367195 2 NA NA -5.76830579631462 LTS-040 chr17 34640931 34640942 12 * c(CCL4L1, NA) NA 0 NA 2.542 1 NA NA NA NA NA LTS-040 chr17 34640943 36234012 1593070 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.18313644852499 15 0.0456568985034286 1.12525007176424 1563 0.354324431438902 4 4 0 -6.87139628308482 LTS-040 chr17 36234013 36351755 117743 * c(YWHAEP7, LOC440434) NA 0 NA 0.572 1 NA NA NA NA NA LTS-040 chr17 36351756 36385038 33283 * LOC440434 0.35673049098355 4 0.154579806788166 0.592659346841497 65 0.477065719750999 1 1 0 -6.75325873562438 LTS-040 chr17 36385039 36398156 13118 * LOC440434 NA 0 NA 0.889 1 NA NA NA NA NA LTS-040 chr17 36398157 44172146 7773990 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-040 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.173267527564282 266 0.0613745002484667 1.1692480432617 15161 0.355821870550609 4 4 0 -6.75456761962219 LTS-040 NA NA NA NA LTS-040 chr17 44172147 44248157 76011 * character(0) NA 0 NA 0.669 1 NA NA NA NA NA LTS-040 chr17 44248158 44414867 166710 * character(0) 0.180074350468253 2 0.00636396103067893 0.748202359361014 77 0.581938426462905 9 8 1 -7.05451690816669 LTS-040 chr17 44414868 44430167 15300 * character(0) NA 0 NA 1.217 1 NA NA NA NA NA LTS-040 chr17 44430168 45000529 570362 * c(WNT3, WNT9B, GOSR2) 0.181686435584913 2 0.00777817459305203 1.15689228366357 170 0.613426326455073 9 8 1 -7.11618215320448 LTS-040 chr17 45000530 45008570 8041 * GOSR2 0.125 1 NA 1.13211603869988 13 0.417610188130952 4 4 0 -5.76445611314837 LTS-040 chr17 45008571 45219336 210766 * c(MIR5089, RPRML, GOSR2, CDC27) 0.358124114928562 9 0.129084382392983 1.0571686406674 161 0.273890453063817 4 3 1 -6.78037684761428 LTS-040 chr17 45219337 45229261 9925 * CDC27 0.065 1 NA 0.976258692452441 21 0.436200467238456 3 3 0 -5.76441061372373 LTS-040 chr17 45229262 48154817 2925556 * c(MIR1203, MIR3185, HOXB-AS1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, KAT7, NXPH3, SNF8, OSBPL7, FLJ40194, B4GALNT2, EFCAB13, MRPL10, PHOSPHO1, DLX3, DLX4, ZNF652, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, TBX21, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC2, ITGA3, ITGB3, KPNB1, HOXB-AS3, MIR10A, MIR152, MIR196A1, MYL4, NFE2L1, NGFR, ABI3, COPZ2, ATP5G1, PHB, PNPO, UBE2Z, NA NA NA NA NA NA NA NA NA LTS-040 MRPL45P2, SP2, FLJ45513, PRR15L, CDK5RAP3, SP6, FAM117A, SPOP, PRAC1, SKAP1, LRRC46, SCRN2, NPEPPS, TBKBP1, CDC27) 0.152490955406491 69 0.0594212962819973 1.12005827673153 3952 0.320607238267137 4 4 0 -6.79446381828827 LTS-040 NA NA NA NA LTS-040 chr17 48154818 48155443 626 * ITGA3 NA 0 NA 1.321 1 NA NA NA NA NA LTS-040 chr17 48155444 48771882 616439 * c(CHAD, COL1A1, EME1, TMEM92, SAMD14, CACNA1G-AS1, ITGA3, HILS1, MRPL27, PDK2, EPN3, RSAD1, LRRC59, XYLT2, SGCA, SPATA20, ACSF2, MYCBPAP, PPP1R9B, ABCC3, CACNA1G, ANKRD40) 0.147029439557355 41 0.0330684434350864 1.21538362088348 2029 0.284585812198982 5 5 0 -6.84034723247681 LTS-040 chr17 48771883 70120059 21348177 * c(SNORA38B, TOM1L1, LINC00674, MIR3614, C17orf112, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR4524A, MIR3064, MIR5047, MIR4524B, TOB1, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, WFIKKN2, COX11, DYNLL2, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, ANKFN1, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NA NA NA NA NA NA NA NA NA LTS-040 MMD, MTVR2, STXBP4, NOL11, TANC2, PITPNC1, OR4D1, GH1, GH2, CACNG5, CACNG4, C17orf58, MILR1, C17orf47, GDPD1, HLF, ICAM2, METTL2A, C17orf67, NACA2, SKA2, APOH, LRRC37A3, KCNJ2, RNF126P1, KCNJ16, KPNA2, YPEL2, C17orf82, TOB1-AS1, KCNJ2-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, NME1, NME2, UTP18, RNFT1, TUBD1, TACO1, AMZ2, MRPS23, PTRH2, LUC7L3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PECAM1, SEPT4, FAM20A, MBTD1, BCAS3, RNF43, MKS1, LINC00483, WIPI1, SMG8, TMEM100, MSX2P1, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CA10, CCDC47, PSMC5, PSMD12, INTS2, PCTP, RAD51C, SCPEP1, RPS6KB1, SCN4A, HEATR6, SRSF1, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, NME1-NME2, SMARCD2, SOX9, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, MIR454, TRIM25, VEZF1, CACNG1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 DHX40, LIMD2, KCNH6, COIL, AKAP1, VMP1, EPX, AXIN2, BRIP1, KIF2B, USP32, PPM1D, DGKE, RGS9, SPAG9, CEP95, MTMR4, SLC16A6, ANKRD40, STRADA, PRR29, NOG, TSPOAP1, TBX4, CD79B, MRC2, HELZ, MED13) 0.15385002045074 129 0.0442039872671016 1.14361671886134 11425 0.278856782716386 4 4 0 -6.90621542716438 LTS-040 NA NA NA NA LTS-040 chr17 70120060 70120142 83 * SOX9 NA 0 NA 2.419 1 NA NA NA NA NA LTS-040 chr17 70120143 70732881 612739 * c(LINC00673, SLC39A11, LINC00511, SOX9) NA 0 NA 1.6328766132017 66 0.437922340934984 6 NA NA -5.7666905477894 LTS-040 chr17 70732882 80363378 9630497 * c(LOC100130370, SMIM6, TNRC6C-AS1, CD300LD, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, CD300C, CD300A, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, CD300LB, KIF19, TBC1D16, NA NA NA NA NA NA NA NA NA LTS-040 AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, CD300LF, C17orf77, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, SLC39A11, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, CDC42EP4, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, LINC00469, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, CD300E, OTOP3, MCRIP1, GPR142, ZACN, ITGB4, BTBD17, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, LOC400620, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, SDK2, TMEM104, C17orf80, CCDC40, NPLOC4, ST6GALNAC1, GPRC5C, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PYCR1, PCYT2, RAC3, RFNG, SLC25A19, RPL38, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, CPSF4L, SMIM5, DNAI2, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, SSTR2, SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FAM104A, MGC16275, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, COG1, RECQL5, TTYH2, PGS1, AATK, TMEM94, EIF4A3) 0.159392948282752 452 0.0504629274738574 1.16770503537402 14284 0.396740637264965 4 4 0 -6.73864543398576 LTS-040 NA NA NA NA LTS-040 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 1.306 1 NA NA NA NA NA LTS-040 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.175157568287357 2 0.0388908729652601 2.22568673354964 39 1.03944426784937 15 13 2 -6.73524475786035 LTS-040 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.085 1 NA NA NA NA NA LTS-040 chr17 80391535 81006387 614853 * c(RAB40B, B3GNTL1, NARF, HEXDC, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.158485974963778 16 0.0273736491295309 1.14125670176217 843 0.287862940362035 4 4 0 -6.74981104352665 LTS-040 chr17 81006388 81083625 77238 * c(B3GNTL1, METRNL) NA 0 NA 1.14469905358096 43 0.230173551450586 4 NA NA -5.76518250811259 LTS-040 chr18 116845 117255 411 * ROCK1P1 0.353 1 NA 0.701962786048674 9 0.186601253419632 2 2 0 -5.7644904525337 LTS-040 chr18 117256 3580513 3463258 * c(MYL12B, NDC80, MYL12A, CETN1, ADCYAP1, SMCHD1, CLUL1, TYMSOS, ENOSF1, LINC00470, CBX3P2, METTL4, TGIF1, ROCK1P1, LOC727896, TYMS, YES1, COLEC12, EMILIN2, MYOM1, USP14, DLGAP1, LPIN2, THOC1) 0.370237086685716 44 0.0644703907979515 0.488135786806157 1848 0.171179984639369 1 1 0 -8.6180715024763 LTS-040 chr18 3580514 8546051 4965538 * c(LINC01387, LOC100192426, MIR4317, MIR3976, DLGAP1-AS4, LINC00526, DLGAP1-AS3, EPB41L3, DLGAP1-AS5, LAMA1, LINC00667, LRRC30, LINC00668, PTPRM, AKAIN1, MIR3976HG, TMEM200C, DLGAP1-AS1, ZBTB14, ARHGAP28, L3MBTL4, DLGAP1) 0.381576868567949 40 0.0659197453007278 0.556770532005738 1421 0.142528904571085 1 1 0 -7.37217515377237 LTS-040 chr18 8546052 8609754 63703 * RAB12 NA 0 NA 0.509 1 NA NA NA NA NA LTS-040 chr18 8609755 15006145 6396391 * c(LDLRAD4-AS1, MIR3156-2, MIR4526, MIR5190, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, ZNF519, RAB12, ANKRD12, MTCL1, GNAL, CYP4F35P, ANKRD62, IMPA2, ANKRD30B, POTEC, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, PSMG2, TWSG1, CHMP1B, PTPN2, PIEZO2, MPPE1, LDLRAD4, CEP76, SEH1L, TXNDC2, TUBB6, RNMT, NAPG, VAPA, PPP4R1) 0.364014325728251 76 0.0868653687075681 0.518591523420584 3360 0.763656638754138 1 1 0 -6.9184856509991 LTS-040 chr18 15006146 15006193 48 * character(0) NA 0 NA 0.466 1 NA NA NA NA NA LTS-040 chr18 18529727 18529837 111 * ROCK1 0.464 1 NA 0.704957481932181 3 0.505865594797669 2 2 0 -5.76441283733234 LTS-040 chr18 18529838 22040892 3511055 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, ANKRD29, ABHD3, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, ROCK1, CTAGE1, SNRPD1, GREB1L, TMEM241, RIOK3, CABLES1) 0.387981381684424 37 0.115587771987495 0.765324871013755 2500 0.193487477190054 2 1 1 -6.81911254534474 LTS-040 chr18 22040893 22048710 7818 * HRH4 NA 0 NA 1.199 1 NA NA NA NA NA LTS-040 chr18 22048711 28742778 6694068 * c(CDH2, MIR302F, PSMA8, AQP4-AS1, DSC1, DSC2, DSC3, ZNF521, KCTD1, AQP4, HRH4, SS18, TAF4B, PCAT18, LOC729950, CHST9) 0.372829262758324 21 0.131557447165723 0.854841585230227 1129 0.234525261498573 2 1 1 -7.37277144496032 LTS-040 chr18 28742779 77915944 49173166 * c(ZSCAN30, SNORD58C, PARD6G-AS1, LOC100131655, LINC01630, MIR1539, MIR4319, MIR4318, MIR4320, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4529, MIR3591, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5011, MIR5583-1, LINC-ROR, LINC01544, TSHZ1, ACAA2, CD226, ZNF271P, MALT1, TXNL4A, MAPRE2, POLI, HAUS1, ALPK2, LOXHD1, INO80C, FAM69C, STARD6, C18orf25, CCBE1, NA NA NA NA NA NA NA NA NA LTS-040 CBLN2, SLC25A52, DSG4, CYB5A, C18orf54, TCEB3C, DCC, DSC1, DSG1, DSG2, DSG3, DTNA, FBXO15, ZBTB7C, SKA1, CFAP53, DOK6, RNF152, LINC00305, FECH, ADNP2, TRAPPC8, PHLPP1, NEDD4L, WDR7, PIGN, ZNF396, KDSR, SLC39A6, GALR1, GALNT1, RTTN, TPGS2, SETBP1, KCNG2, SNORD58B, SNORD58A, SALL3, CDH20, DYNAP, BOD1L2, LINC00907, SIGLEC15, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, TIMM21, GRP, ST8SIA5, RAX, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CXXC1, LOC339298, CPLX4, CCDC178, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MIR187, SMAD2, SMAD4, SMAD7, MBD1, MBP, MC4R, ME2, MEP1B, HSBP1L1, WBP11P1, MYO5B, NARS, NFATC1, RNF165, C18orf32, ATP5A1, SERPINB2, ST8SIA3, IER3IP1, TCEB3B, MEX3C, RNF138, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PIK3C3, PMAIP1, TMX3, DYM, ZCCHC2, RNF125, MOCOS, RPRD1A, ZNF532, ELP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ELAC1, ZNF407, CNDP2, MAPK4, CELF4, KIAA1328, KLHL14, KIAA1468, EPG5, RAB27B, BCL2, RIT2, RPL17, SERPINB3, SERPINB4, KC6, LOC643542, C18orf63, GAREM1, MIR924HG, SKOR2, SLC14A1, SCARNA17, SNORA37, SYT4, TCF4, TTR, ZNF24, ZNF236, CCDC102B, RBFA, PQLC1, FHOD3, CCDC68, ASXL3, SLC14A2, NETO1, KATNAL2, C18orf21, MRO, HDHD2, ZNF397, PARD6G, CNDP1, SERPINB7, NOL4, TNFRSF11A, MBD2, SERPINB12, SERPINB11, PSTPIP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PIAS2, SEC11C, CTDP1, DSEL, SOCS6, B4GALT6, TXNL1, LIPG, ONECUT2, VPS4B, ZNF516, CTIF) 0.397181676515867 380 0.101014002000685 0.792861639332312 16969 0.280559096089554 2 1 1 -6.86521077953188 LTS-040 NA NA NA NA LTS-040 chr18 77915945 78005362 89418 * c(PARD6G-AS1, PARD6G) NA 0 NA 0.769406141618722 79 0.192780878346766 2 NA NA -5.76472999295011 LTS-040 chr19 107416 107456 41 * character(0) 0.307 1 NA 6.685 1 NA NA NA NA NA LTS-040 chr19 107457 1376433 1268977 * c(MED16, MIR3187, MIR4745, FSTL3, ABCA7, CIRBP, GRIN3B, MISP, CNN2, C2CD4C, CIRBP-AS1, CFD, ARID3A, EFNA2, ELANE, SBNO2, ARHGAP45, CBARP, SHC2, FGF22, ODF3L2, GPX4, GZMM, LINC01002, PRSS57, PALM, THEG, ATP5D, POLR2E, POLRMT, MIER2, C19orf24, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, STK11, BSG, PLPPR3, OR4F17, MADCAM1, KISS1R, MUM1, PLPP2, MIDN, R3HDM4, TMEM259, TPGS1, CDC34) 0.247251152588704 99 0.0742648544360753 0.762752089758164 2454 1.24565018919847 2 2 0 -6.7338099620438 LTS-040 chr19 1376434 1428802 52369 * c(GAMT, DAZAP1, NDUFS7, MUM1) 0.456 1 NA 0.762389847965291 159 0.167194994152279 2 2 0 -5.76506001228742 LTS-040 chr19 1428803 6368686 4939884 * c(LOC100128568, C19orf71, DPP9-AS1, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, MIR4747, MIR4746, EBI3, PLIN3, APC2, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, PLK5, CSNK1G2, TICAM1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, KDM4B, ZFR2, PIP5K1C, FUT3, FUT5, NA NA NA NA NA NA NA NA NA LTS-040 FUT6, CSNK1G2-AS1, TINCR, CATSPERD, RPL36, TIMM13, DAZAP1, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, MKNK2, UHRF1, SLC39A3, ADAMTSL5, TMPRSS9, C19orf35, HSD11B1L, ONECUT3, MEX3D, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, PCSK4, PLEKHJ1, FEM1A, STAP2, BTBD2, CCDC94, MYDGF, MAP2K2, NCLN, SPPL2B, DUS3L, SHD, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, FSD1, TLE6, ZNF556, UBXN6, ACSBG2, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MPND, RANBP3, ATCAY, S1PR4, AP3D1, DPP9, REEP6, LONP1, APBA3, SAFB2) 0.399129178136057 226 0.0760965769699838 0.777485847242851 7951 0.215688997385559 2 1 1 -6.80652751903404 LTS-040 NA NA NA NA LTS-040 chr19 6368687 6374160 5474 * c(CLPP, ALKBH7) NA 0 NA 0.939 1 NA NA NA NA NA LTS-040 chr19 6374161 8579011 2204851 * c(LOC100128573, PET100, SH2D3A, MIR3940, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TUBB4A, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ELAVL1, MCEMP1, ADGRE1, FCER2, ARHGEF18, KANK3, SLC25A41, MBD3L5, GTF2F1, CD209, ADGRE4P, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, HNRNPM, NDUFA7, FLJ25758, ANGPTL4, MARCH2, CD320, MAP2K7, PSPN, RETN, GPR108, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, NA NA NA NA NA NA NA NA NA LTS-040 MBD3L3, SNAPC2, STXBP2, C3, VAV1, SLC25A23, ZNF557, CERS4, DENND1C, LRRC8E, PRR36, PRAM1, ALKBH7, ZNF414, FBN3, KHSRP, TNFSF14, TNFSF9, RAB11B, CRB3, PEX11G, TRIP10, CD70) 0.42392773441668 75 0.0972574034329651 0.914555087881877 3899 0.205428689179687 3 2 1 -6.94415581449354 LTS-040 NA NA NA NA LTS-040 chr19 8579012 8586086 7075 * c(MYO1F, ZNF414) 0.468 1 NA 0.976679384192473 5 0.384352052160516 3 3 0 -5.76441048295918 LTS-040 chr19 8586087 9805397 1219311 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF558, OR7D2, OR7E24, ACTL9, OR2Z1, ZNF561-AS1, ZNF699, OR7G2, OR7G3, MYO1F, ZNF562, ZNF317, ZNF812P, ZNF121, ZNF177, ZNF426, ADAMTS10, ZNF559, MBD3L1, ZNF561, MUC16) 0.429928675954903 88 0.0735171336451166 0.938441474149591 2285 0.312591038556129 3 2 1 -6.904043932781 LTS-040 chr19 9805398 9968139 162742 * c(ZNF846, PIN1, FBXL12, UBL5, ZNF812P, OLFM2) 0.457 1 NA 0.956922341239979 155 0.298826200095351 3 3 0 -5.76503561660699 LTS-040 chr19 9968140 21909933 11941794 * c(SNORD105B, ZGLP1, ZNF737, TMEM221, MEF2B, MIR1470, MIR1270, MIR1181, MIR1238, MIR3188, MIR4322, MIR3189, LOC100507373, ZNF625-ZNF20, AP1M2, MIR4748, SUGP2, DDX39A, ZNF443, AKAP8, CDKN2D, B3GNT3, KLF2, IFI30, CARM1, CHERP, RNASEH2A, KLF1, CERS1, GIPC1, ILVBL, TMED1, CDC37, FDX1L, CYP4F8, NACC1, COPE, MISP3, PGLYRP2, CCDC124, NXNL1, CCDC151, ZNF653, CIB3, RLN3, RAVER1, CALR3, ZNF441, ZNF491, ZNF440, NA NA NA NA NA NA NA NA NA LTS-040 SWSAP1, CCDC159, LRRC25, OR1I1, NR2C2AP, CNN1, CCDC105, CYP4F22, LINC00661, OR10H4, ANKLE1, COMP, NCAN, ILF3-AS1, ZNF563, SPC24, CILP2, ZNF738, ZNF714, LINC00905, ZNF791, ZNF564, ZNF709, ZNF433, ZNF100, SSBP4, ZNF431, DHPS, DNASE2, DNM2, DNMT1, ELAVL3, ZNF627, DAND5, ZNF626, FAM129C, EPOR, NR2F6, FARSA, ADGRL1, MAST1, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, MAU2, BRD4, CASP14, FKBP8, C19orf38, SYCE2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TMEM59L, PGLS, LSM4, KANK2, FAM32A, OR7A17, GCDH, TSPAN16, OR10H3, OR10H2, OR10H1, GDF1, OR7C2, OR7A5, OR7C1, SNORA68, SNORD41, AKAP8L, ARRDC2, CPAMD8, ZNF763, ZNF844, OR10H5, NWD1, SLC25A42, LINC00663, ZNF493, LOC284454, C19orf53, BABAM1, HOOK2, TNPO2, ADGRE2, DNAJB1, ICAM1, ICAM3, ICAM4, NANOS3, PALM3, ZNF429, IL12RB1, ILF3, INSL3, JAK3, JUNB, JUND, TMEM205, YJEFN3, SLC27A1, KCNN1, C3P1, ZNF788, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CLEC17A, CYP4F24P, OR7A10, LDLR, LINC00664, ZNF833P, HAPLN4, CYP4F3, LYL1, MIR181C, MIR199A1, MAN2B1, BORCS8-MEF2B, RAB8A, ASNA1, ZNF506, MYO9B, NDUFB7, NFIX, NOTCH3, P2RY11, COL5A3, RDH8, MRPL4, NDUFA13, GMIP, ECSIT, WDR83OS, PDE4A, PDE4C, ISYNA1, ZNF44, PIK3R2, TM6SF2, S1PR5, ACP5, DDX49, GATAD2A, BEST2, PGPEP1, CC2D1A, TMEM161A, C19orf60, MAP1S, KLHL26, C19orf66, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 USE1, PRKCSH, ANGPTL8, ZNF253, PPAN, ATP13A1, RGL3, SLC44A2, PTGER1, MIR181D, ZNF490, DOCK6, ANO8, SUGP1, CYP4F11, EPS15L1, WIZ, RAB3A, RAD23A, UPF1, RFX1, RPL18A, C19orf67, PLPPR2, RASAL3, MRPL34, KRI1, SLC1A6, ZSWIM4, SLC5A5, UCA1, SMARCA4, CYP4F12, ZNF826P, BST2, SNORD105, PPAN-P2RY11, MIR638, MIR639, PRDX2, ICAM5, TPM4, TYK2, ZNF878, LOC729966, BORCS8, UBA52, ZNF14, ZNF708, ZNF20, ZNF69, ZNF85, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZNF90, ZNF136, CACNA1A, YIPF2, C19orf43, DDA1, KXD1, TMEM38A, SMIM7, C19orf57, ABHD8, OCEL1, COLGALT1, EPHX3, PODNL1, SLC35E1, ZNF442, ZNF430, PBX4, KIAA1683, CALR, CCDC130, ELL, QTRT1, ZNF93, PLVAP, RTBDN, ANGPTL6, USHBP1, TSSK6, C19orf44, MRI1, FBXW9, WDR83, ELOF1, ZNF333, ADGRE3, GTPBP3, MPV17L2, HSH2D, ATG4D, CYP4F2, SYDE1, RFXANK, EIF3G, STX10, AP1M1, F2RL3, SAMD1, DCAF15, GADD45GIP1, ZNF799, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 C19orf52, ZNF625, ZNF700, ZNF439, ZNF486, ZNF682, LPAR2, CRLF1, S1PR2, OLFM2, HAUS8, MVB12A, ARMC6, ZNF101, MED26, HOMER3, IL27RA, GDF15, TECR, RAB3D, IER2, ADGRE5, KEAP1) 0.450206681038195 409 0.0631964495932394 0.908322039559509 18848 0.230753316715493 3 2 1 -7.89748577379194 LTS-040 NA NA NA NA LTS-040 chr19 21909934 21910331 398 * ZNF100 NA 0 NA 1.181 1 NA NA NA NA NA LTS-040 chr19 21910332 24115369 2205038 * c(ZNF730, ZNF729, ZNF257, ZNF98, ZNF681, ZNF676, ZNF100, ZNF675, ZNF728, RPSAP58, GOLGA2P9, ZNF724, ZNF492, LOC641367, ZNF726, ZNF43, ZNF91, ZNF99, ZNF208) 0.388297867678131 12 0.086152569036072 1.05424549628952 656 0.263812335269887 3 2 1 -6.83351020965155 LTS-040 chr19 24115370 24345121 229752 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 0.92852031905678 95 0.209408600410995 3 NA NA -5.77357897526599 LTS-040 chr19 28247625 30097268 1849644 * c(LINC01532, POP4, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0.414 1 NA 0.897543012735118 55 0.17409587126228 3 3 0 -6.03522491795218 LTS-040 chr19 30097269 35851337 5754069 * c(HPN-AS1, SCGB2B3P, THEG5, UBA2, LINC00904, MIR5196, CEBPA, CEBPG, POP4, SLC7A9, WDR88, WTIP, ZNF792, DPY19L3, ZNF599, FAM187B, LGI4, ZNF507, LSM14A, GPI, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, RGS9BP, NUDT19, LOC400684, LOC400685, LRP3, MAG, LSR, PEPD, FXYD1, FXYD3, FXYD7, FXYD5, GPATCH1, ZNF302, SLC7A10, TSHZ3, GRAMD1A, HAMP, SCN1B, SCGB1B2P, CHST8, USF2, KCTD15, PLEKHF1, CEBPA-AS1, C19orf12, ANKRD27, NA NA NA NA NA NA NA NA NA LTS-040 PDCD2L, CEP89, RHPN2, URI1, CCNE1, ZNF30, PDCD5, FAAP24, TDRD12, CD22, NA, KIAA0355, ZNF536) 0.424991884183964 79 0.11510450919209 0.931247576311059 3443 0.258213564960915 3 2 1 -6.91474135523209 LTS-040 NA NA NA NA LTS-040 chr19 35851338 35863627 12290 * FFAR3 0.398 1 NA 0.22799061771478 39 0.257165917340995 0 0 0 -5.79416063155284 LTS-040 chr19 35863628 35863689 62 * character(0) NA 0 NA 0.604 1 NA NA NA NA NA LTS-040 chr19 35863690 40384193 4520504 * c(LINC01531, LOC100129935, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, DLL3, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, CLC, ZNF573, EID2B, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, LGALS16, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, EID2, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, NA NA NA NA NA NA NA NA NA LTS-040 FBL, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, LGALS13, HNRNPL, APLP1, ZNF260, ZNF850, NCCRP1, SYCN, LEUTX, SELENOV, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, LGALS17A, NFKBIB, NPHS1, ATP4A, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, LGALS14, PSMD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LRFN1, ZFP14, ZNF529, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, FCGBP, YIF1B, DYRK1B, ZNF461, ZNF585B, TIMM50, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.441470064931743 136 0.086534729889936 0.927263127490034 8103 0.277889431884561 3 2 1 -7.03013808408353 LTS-040 NA NA NA NA LTS-040 chr19 40384194 40389649 5456 * FCGBP NA 0 NA 0.096 1 NA NA NA NA NA LTS-040 chr19 40389650 40406034 16385 * FCGBP NA 0 NA 0.214131280479439 40 0.465070983691517 0 NA NA -5.77969032026962 LTS-040 chr19 40406035 44117052 3711018 * c(SRRM5, ERICH4, LOC100289650, MIR4323, PCAT19, LOC100505622, MIA-RAB4B, RAB4B-EGLN2, LIPE-AS1, CEACAM5, RABAC1, CEACAM3, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, EGLN2, ZNF526, IRGQ, ZNF428, C19orf47, LYPD4, HIPK4, TTC9B, CYP2A6, CYP2A7, CYP2A13, CYP2B6, CYP2B7P, CYP2F1, DEDD2, ZNF780B, MEGF8, ERF, AKT2, CYP2G1P, CIC, ETHE1, PRG1, PLD3, LYPD3, ZNF780A, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, NA NA NA NA NA NA NA NA NA LTS-040 GRIK5, GSK3A, CYP2S1, SERTAD3, SERTAD1, ZNF546, B3GNT8, PINLYP, LIPE, MAP3K10, PSG8, CEACAM6, ATP1A3, PAFAH1B3, RAB4B, POU2F2, ATP5SL, AXL, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, PSMC4, CD177, PRX, SPTBN4, BCKDHA, RPS19, CEACAM1, DMRTC2, TMEM91, BLVRB, ZNF574, PSG10P, PHLDB3, SNRPA, MIR641, TGFB1, XRCC1, ZNF576, COQ8B, CNTD2, ITPKC, B9D2, MIA, TEX101, LTBP4, CNFN, FCGBP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 CEACAM21, CCDC97, ARHGEF1, NUMBL, SHKBP1, CD79A) 0.444569810018034 117 0.0726348193095248 0.919251498796882 5783 0.221998752253294 3 2 1 -7.21374433590154 LTS-040 NA NA NA NA LTS-040 chr19 44117053 44376850 259798 * c(SRRM5, ZNF428, CADM4, LYPD5, ZNF283, ZNF404, KCNN4, PLAUR, SMG9, IRGC, ZNF576) 0 1 NA 0.937112332986976 357 0.266218692143708 3 3 0 -5.76882851169145 LTS-040 chr19 44376851 44739303 362453 * c(LOC100379224, LOC100505715, ZNF234, ZNF404, ZNF284, ZNF45, ZNF221, ZNF222, ZNF155, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF230, ZNF235) 0.344080846122907 9 0.231255810737806 0.919998759244003 584 0.271294544358401 3 2 1 -6.77030858563051 LTS-040 chr19 44739304 44739399 96 * c(ZNF227, ZNF235) 0.413 1 NA 1.01841902725237 3 0.217348414609661 3 3 0 -5.76441191074677 LTS-040 chr19 44739400 46394055 1654656 * c(EML2-AS1, MIR642B, APOC4-APOC2, MIR4531, TOMM40, PPP1R13L, CD3EAP, CLASRP, CKM, CLPTM1, CEACAM20, PPM1N, KLC3, IGSF23, SIX5, ZNF296, DMPK, DMWD, ERCC1, ERCC2, FBXO46, FOSB, CBLC, EML2, IRF2BP1, GIPR, ZNF285, GPR4, PPP1R37, NKPD1, FOXA3, MYPOP, APOC1, APOC1P1, APOC2, APOE, ZNF233, CEACAM22P, CEACAM16, BLOC1S3, BHMG1, BCAM, MIR330, QPCTL, CEACAM19, MARK4, PVR, NECTIN2, RELB, BCL3, RTN2, SNRPD2, NA NA NA NA NA NA NA NA NA LTS-040 MIR642A, VASP, ZNF180, ZNF227, ZNF112, ZNF229, TRAPPC6A, GEMIN7, OPA3, RSPH6A, SYMPK, EXOC3L2, ZNF235) 0.427481576094348 87 0.0760790961387311 0.916562405518355 3259 0.201240299871214 3 2 1 -6.97006249874591 LTS-040 NA NA NA NA LTS-040 chr19 46394056 52132383 5738328 * c(SNAR-G1, SNAR-F, SNAR-A1, SNAR-A12, LOC100129083, BSPH1, SNAR-B2, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, SNAR-D, SNAR-G2, MIR3191, MIR3190, MIR320E, MIR4324, NAPA-AS1, CARD8-AS1, PPP5D1, PTOV1-AS1, DACT3-AS1, GFY, SAE1, MIR4749, MIR4750, MIR4751, MIR5088, RNU6-66P, LOC101059948, CGB3, RUVBL2, KDELR1, KLK11, KPTN, KLK8, FAM71E1, PNKP, PTH2, SIGLEC11, CGB1, CGB2, LMTK3, AP2S1, CLDND2, JOSD2, IZUMO2, CPT1C, NA NA NA NA NA NA NA NA NA LTS-040 ALDH16A1, NTN5, CRX, VSIG10L, C19orf84, CCDC155, DACT3, IGFL2, AP2A1, DBP, ZNF114, SPACA4, ADM5, EMP3, ETFB, FCGRT, ATF5, CARD8, ZC3H4, FLT3LG, RPL13A, SYNGR4, NUP62, PPP1R15A, FTL, FUT1, FUT2, INAFM1, NAPSB, KLK5, PRKD2, ZNF473, IL4I1, KLK13, CCDC9, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, SIGLEC7, BBC3, DKKL1, SIGLEC9, SIGLEC8, C5AR2, DHDH, TPRX1, MAMSTR, IZUMO1, EMC10, MGC45922, KLK9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 SIGLEC17P, SIGLECL1, GPR32, SLC6A16, GRIN2D, ARHGAP35, STRN4, GYS1, GLTSCR2, GLTSCR1, EHD2, HRC, PRMT1, MYPOP, NANOS2, C19orf81, KLK3, IRF3, KCNA7, KCNC3, IGFL1, KCNJ14, KLK1, KLK2, IGFL3, LHB, LIG1, LIM2, SIGLEC16, LOC400710, IGLON5, MIR150, KLK14, KLK12, IGFL4, MYBPC2, NKG7, NOVA2, NPAS1, NTF4, NUCB1, SHANK1, NOSIP, HSD17B14, VRK3, PTOV1, POLD1, TRPM4, FAM83E, RASIP1, TMEM160, PIH1D1, C19orf73, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PNMAL1, TMEM143, PPP5C, ASPDH, KLK15, CABP5, PRRG2, KLK7, KLK6, KLK10, SPHK2, MEIS3, SLC17A7, RCN3, PTGIR, PNMAL2, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, KLKP1, RPL18, RPS11, RRAS, CLEC11A, ELSPBP1, LIN7B, SELENOW, HIF3A, SLC1A5, SEC1P, SLC8A2, SNRNP70, SPIB, SULT2B1, SULT2A1, SNORD23, SNORD88A, SNORD88B, SNORD88C, C5AR1, TULP2, CCDC61, CEACAM18, LINC01530, NR1H2, MIR769, CA11, ZNF175, FKRP, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TBC1D17, MYH14, FUZ, CALM3, MED25, BCL2L12, GRWD1, CCDC8, ZNF541, SYT3, AKT1S1, SNORD35B, TEAD2, C19orf48, PPFIA3, PLA2G4C, NAPA, SIGLEC5, SIGLEC10, SIGLEC12, PGLYRP1, CTU1, CYTH2, CCDC114, LOC93429, ACPT, CGB5, CGB7, LRRC4B, CGB8, GNG8, CD33, SIGLEC6, NAPSA, CD37, KLK4, DHX34) 0.405471612598185 260 0.0623597469986693 0.784210466441551 10822 0.278147161123192 2 1 1 -6.79624652865279 LTS-040 NA NA NA NA LTS-040 chr19 52132384 52132606 223 * SIGLEC5 NA 0 NA 1.255 1 NA NA NA NA NA LTS-040 chr19 52132607 52149142 16536 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.54332459162999 39 0.632265803190352 6 NA NA -5.76442204595953 LTS-040 chr19 52149143 52195905 46763 * c(SIGLEC14, MIR99B) NA 0 NA 0.677 1 NA NA NA NA NA LTS-040 chr19 52195906 52217405 21500 * c(SPACA6, HAS1, MIRLET7E, MIR125A, MIR99B) 0.48 1 NA 0.839886739082684 47 0.204518927423296 2 2 0 -5.76604242843076 LTS-040 chr19 52217406 52223121 5716 * HAS1 0.296 1 NA 0.793132774045567 31 0.197053761563276 2 2 0 -5.76443131213358 LTS-040 chr19 52223122 53770270 1547149 * c(ERVV-2, ZNF816-ZNF321P, ZNF816, ZNF480, ZNF534, ZNF578, ERVV-1, ZNF836, ZNF610, ZNF600, ZNF320, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF701, ZNF83, ZNF415, ZNF350, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, ZNF766, ZNF468, ZNF160, ZNF432) 0.404764343287033 47 0.0621920126582416 0.782187215839997 1950 0.318766816542227 2 1 1 -6.80024682693279 LTS-040 chr19 53770271 53770286 16 * VN1R4 NA 0 NA 1.026 1 NA NA NA NA NA LTS-040 chr19 53770287 53788218 17932 * c(VN1R4, FAM90A27P) NA 0 NA 1.17320408698627 51 0.47790787035685 4 NA NA -5.76441136971434 LTS-040 chr19 53788219 53792975 4757 * BIRC8 NA 0 NA 0.717 1 NA NA NA NA NA LTS-040 chr19 53792976 54723333 930358 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, LILRB3, BIRC8, OSCAR, ZNF813, TMC4, TPM3P9, ZNF525, PRPF31, LOC284379, VSTM1, TFPT, ZNF761, TARM1, MIR372, MIR373, NDUFA3, CNOT3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, NA NA NA NA NA NA NA NA NA LTS-040 MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, RPS9, TSEN34, MBOAT7, LENG1, LILRA6, ZNF765, NLRP12, MYADM, ZNF845) 0.411266223339686 60 0.0631339621371987 0.776324407929637 1963 0.200062456063182 2 1 1 -6.76469258571579 LTS-040 NA NA NA NA LTS-040 chr19 54723334 54723703 370 * c(LILRB3, LILRA6) NA 0 NA 1.135 1 NA NA NA NA NA LTS-040 chr19 54723704 54744104 20401 * c(LILRB3, LILRA6) 0.36706425494392 17 0.0676101497775384 1.20586822569258 69 0.422835511743603 6 4 2 -6.73984220094472 LTS-040 chr19 54744105 54744115 11 * c(LILRB3, LILRA6) NA 0 NA 0.867 1 NA NA NA NA NA LTS-040 chr19 54744116 59082368 4338253 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, MIR4752, RNU6-64P, TRIM28, ZNF256, LILRB2, ZNF211, TRAPPC2B, ZNF274, ZNF460, LILRB1, LILRB5, SLC27A5, LILRB4, LILRA1, LILRB3, LILRA3, LILRA2, RDH13, U2AF2, ZIM3, LENG8, KIR3DL3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, NA NA NA NA NA NA NA NA NA LTS-040 ZNF542P, ZNF582, ZNF583, CDC42EP5, ZNF497, ZNF550, ZNF579, NLRP7, ZNF584, ZSCAN4, NLRP11, FCAR, FKBP1AP1, PPP6R1, LILRA4, ZIM2, HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, LILRA5, IL11, ZNF773, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, KIR3DL2, ZNF582-AS1, TMEM238, ZNF470, ZNF749, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZNF324B, LAIR1, LAIR2, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, GP6, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, NLRP2, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, TTYH1, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, LILRP2, LILRA6, ZNF329, ZNF419, ISOC2, ZNF552, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, KIR3DX1, ZNF551, UBE2M, ZNF835, LENG9, ZNF264, NCR1) 0.375006932159828 337 0.0968182183161244 0.784905187918455 8710 0.274706960660417 2 1 1 -6.89401175148814 LTS-040 NA NA NA NA LTS-040 chr19 59082369 59084001 1633 * c(MZF1-AS1, MZF1) NA 0 NA 0.718573942061017 15 0.0352376962654376 2 NA NA -5.76986876951565 LTS-040 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.413 1 NA 1.0632568119475 41 0.275599572550909 3 3 0 -5.76806936222381 LTS-040 chr20 138126 1559003 1420878 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.397282603982675 46 0.0546923455065225 1.15893357567427 1887 0.27884713386353 4 2 2 -6.89402632659148 LTS-040 chr20 1559004 1559181 178 * SIRPB1 NA 0 NA 0.444 1 NA NA NA NA NA LTS-040 chr20 1559182 1586549 27368 * SIRPB1 NA 0 NA 0.178878932399771 40 0.208166575311511 0 NA NA -5.97590237463374 LTS-040 chr20 1586550 7959845 6373296 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, HAO1, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, GPCPD1, CPXM1, MAVS, EBF4, NA NA NA NA NA NA NA NA NA LTS-040 PTPRA, FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, BMP2, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.382425745077474 157 0.0574507152323804 1.17436988125886 5397 0.322296451985987 4 2 2 -7.0560269558618 LTS-040 NA NA NA NA LTS-040 chr20 7959846 13060331 5100486 * c(SNAP25-AS1, SLX4IP, JAG1, BTBD3, PLCB1, LAMP5, LOC339593, PLCB4, SPTLC3, TMX4, PAK5, ANKEF1, SNAP25, MKKS) 0.437088608616527 34 0.0461923051520323 1.34103134346134 1393 0.350812077682884 5 3 2 -6.92480311375774 LTS-040 chr20 13060332 13260513 200182 * c(ISM1-AS1, ISM1, SPTLC3, TASP1) NA 0 NA 1.23413568499118 108 0.239024554259475 4 NA NA -5.76876147510457 LTS-040 chr20 13260514 13280675 20162 * c(ISM1, TASP1) 0.302 1 NA 0.946542832160113 35 0.165764143470487 3 3 0 -5.76494396204009 LTS-040 chr20 13280676 18805991 5525316 * c(C20orf78, LOC100270804, PET117, MACROD2-AS1, MIR3192, SEC23B, POLR3F, RBBP9, DSTN, MACROD2, BANF2, SCP2D1, ISM1, FLRT3, SNX5, LINC00652, LINC00493, LINC00851, PCSK2, ESF1, DZANK1, KIF16B, TASP1, OTOR, KAT14, OVOL2, RRBP1, BFSP1, SNRPB2, SNORD17, ZNF133, NDUFAF5, SEL1L2, MGME1, DTD1) 0.303281428174832 57 0.0550552069702434 1.07093096306672 2257 0.309185101716587 4 3 1 -7.18223753573798 LTS-040 chr20 18805992 20271042 1465051 * c(C20orf78, LOC100130264, CFAP61, NAA20, CRNKL1, RIN2, SLC24A3) 0.411901140502561 19 0.0594971619550189 1.20462802502596 607 0.258187610477323 4 2 2 -6.77108600530792 LTS-040 chr20 20271043 23966820 3695778 * c(LINC01432, CST8, CSTL1, CST9L, CST9, LINC00261, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, XRN2, CD93, CFAP61, LOC284788, NXT1, FOXA2, INSM1, NKX2-2, PAX1, KIZ, RALGAPA2, NAPB, GZF1, NKX2-4, SSTR4, THBD, GGTLC1) 0.276821541556975 33 0.0984131866318244 1.06405729317526 1630 0.288234200293734 4 3 1 -7.17606011797559 LTS-040 chr20 24523614 26061884 1538271 * c(LOC100134868, NANP, NINL, ABHD12, ZNF337, LOC284798, FAM182A, VSX1, APMAP, PYGB, FAM182B, SYNDIG1, ACSS1, CST7, ENTPD6, GINS1) 0.374789878559533 45 0.122289253886683 1.23618713929494 1197 0.369887699684582 4 3 1 -6.82557795048969 LTS-040 chr20 26061885 26061947 63 * FAM182A NA 0 NA 0.672 1 NA NA NA NA NA LTS-040 chr20 26061948 26188981 127034 * c(NCOR1P1, FAM182A, MIR663AHG, MIR663A) 0.381067860180288 15 0.0946098756548626 0.742240656683446 44 0.382726029335157 3 2 1 -6.78072587699573 LTS-040 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 0.577843418543091 3 0.0958401446854778 1 NA NA -5.76441025046665 LTS-040 chr20 29625845 29625876 32 * FRG1BP 0.351 1 NA 1.372 1 NA NA NA NA NA LTS-040 chr20 29625877 41101055 11475179 * c(MCTS2P, LOC100287792, MIR3193, TGIF2-C20orf24, MIR499B, MIR4755, LINC00489, HM13-AS1, RBM12, MMP24-AS1, MYL9, PROCR, MMP24, BLCAP, PTPRT, CEP250, PXMP4, DEFB118, VSTM2L, SNHG11, DUSP15, TSPY26P, BPIFB6, BPIFA3, C20orf144, CHMP4B, PIGU, HMGB3P1, FAM83C, MLLT10P1, SLC32A1, BPIFA2, NOL4L, MROH8, CCM2L, SOGA1, TLDC2, SUN5, ROMO1, C20orf173, LINC00028, CNBD2, ADIG, LOC149950, COMMD7, BPIFB4, TTLL9, ACTL10, NA NA NA NA NA NA NA NA NA LTS-040 ASXL1, DNMT3B, E2F1, AHCY, EPB41L1, DLGAP4, RALY, MAPRE1, TPX2, ZHX3, NCOA6, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, SAMHD1, AAR2, PPP1R16B, TRPC4AP, SNORA71B, SNORA71A, GGT7, GHRH, FRG1BP, C20orf203, REM1, GSS, HCK, BPIFA4P, LOC339568, ID1, ARHGAP40, XKR7, BPIFB3, EIF6, SNHG17, LBP, ASIP, NNAT, PHF20, SCAND1, BPIFA1, ERGIC3, CDK5RAP1, PLAGL2, PLCG1, UQCC1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 EDEM2, ACSS2, C20orf24, CTNNBL1, RALGAPB, NDRG3, MIR499A, MYH7B, TP53INP2, RPRD1B, RBL1, BCL2L1, TGIF2, DHX35, RPN2, MANBAL, NECAB3, NORAD, LPIN3, SNTA1, SPAG4, BPI, SRC, SNORA71E, SNORA71C, SNORA71D, MIR644A, TGM2, TOP1, ACTR5, DSN1, BPIFB2, HM13, PDRG1, FAM83D, GDF5, DYNLRB1, ITCH, SLA2, CHD6, MAP1LC3A, COX4I2, ZNF341, MYLK2, KIAA1755, EIF2S2, CPNE1, EMILIN3, NFS1, CBFA2T2, BPIFB1, KIF3B, RBM39, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TTI1, TM9SF4, MAFB) 0.297346763496986 180 0.0699832938741622 1.03285098020465 12186 0.291757575261677 3 2 1 -7.8801003147492 LTS-040 NA NA NA NA LTS-040 chr20 41101056 41101154 99 * PTPRT NA 0 NA 1.155 1 NA NA NA NA NA LTS-040 chr20 41101155 41514663 413509 * PTPRT 0.323 1 NA 1.94259998511728 38 0.363090315933782 8 8 0 -5.76495022376637 LTS-040 chr20 42086746 42934021 847276 * c(OSER1-AS1, SGK2, GTSF1L, L3MBTL1, MYBL2, IFT52, OSER1, JPH2, SRSF6, GDAP1L1, TOX2) 0.275756698658685 16 0.0972247396499471 1.07221482556336 860 0.352036437960852 4 3 1 -6.95457365555787 LTS-040 chr20 42934022 43150720 216699 * c(MIR3646, SERINC3, FITM2, R3HDML, HNF4A, TTPAL) NA 0 NA 1.02047092496701 451 0.211570460505623 3 NA NA -5.76914241376438 LTS-040 chr20 43150721 43242852 92132 * c(SERINC3, PKIG) NA 0 NA 1.408 1 NA NA NA NA NA LTS-040 chr20 43242853 43356156 113304 * c(ADA, PKIG, LINC01260, WISP2) 0.483 1 NA 1.25907168965778 125 0.254602929309353 4 4 0 -5.76890825042398 LTS-040 chr20 43356157 43837442 481286 * c(STK4-AS1, TOMM34, WFDC12, RIMS4, WFDC5, KCNS1, PI3, KCNK15, SEMG1, SEMG2, STK4, YWHAB, LINC01260, PABPC1L, WISP2) 0.44574361037554 23 0.040561376905163 1.25931358512985 754 0.25192164423773 4 2 2 -6.89574368731822 LTS-040 chr20 43837443 43849918 12476 * c(SEMG1, SEMG2) NA 0 NA 1.64 1 NA NA NA NA NA LTS-040 chr20 43849919 45242607 1392689 * c(ACOT8, ZNF663P, EPPIN-WFDC6, WFDC2, SPINT3, UBE2C, RBPJL, DNTTIP1, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, WFDC13, WFDC11, WFDC9, TP53TG5, WFDC10B, SPINT4, MMP9, SLC35C2, PIGT, PLTP, CTSA, ZNF334, DBNDD2, EPPIN, SLC12A5, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG2, CDH22, SLC13A3, SLPI, TNNC2, SYS1-DBNDD2, MKRN7P, MATN4, SYS1, WFDC8, SNX21, ZSWIM1, CD40) 0.391541706292799 63 0.0429444383172731 1.83103874715423 2676 0.431523657675702 8 5 3 -6.75917398164797 LTS-040 chr20 45242608 45279851 37244 * SLC13A3 NA 0 NA 0.889 1 NA NA NA NA NA LTS-040 chr20 45279852 45817053 537202 * c(MIR3616, TP53RK, EYA2, SLC13A3, SLC2A10) 0.473368951877855 9 0.0171391365010026 1.37954802451777 265 0.385905623177481 6 3 3 -9.57704623392668 LTS-040 chr20 45817054 45817067 14 * EYA2 0.403 1 NA 5.361 1 NA NA NA NA NA LTS-040 chr20 45817068 46386260 569193 * c(LOC100131496, EYA2, ZMYND8, SULF2, NCOA3) 0.31304981812778 7 0.0582237065120385 2.09340902800321 540 0.487169632702285 8 6 2 -6.7760049462434 LTS-040 chr20 47240843 50419079 3178237 * c(SNORD12B, MIR3194, ATP9A, TRERNA1, CEBPB, ARFGEF2, FAM65C, CSE1L, SLC9A8, ADNP, SNORD12C, MOCS3, LINC01270, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, ZFAS1, NFATC2, BCAS4, DDX27, RNF114, SALL4, ZNFX1, PTGIS, PREX1, PTPN1, SNAI1, STAU1, SNORD12, MIR645, UBE2V1, PARD6B, DPM1, B4GALT5, SPATA2) 0.4156479936911 88 0.103232356408315 1.26026730650131 3199 0.384003329152511 4 2 2 -6.79529748366509 LTS-040 chr20 50419080 50668239 249160 * character(0) NA 0 NA 3.107 1 NA NA NA NA NA LTS-040 chr20 50668240 57829301 7161062 * c(MIR298, MIR4325, MTRNR2L3, SLMO2-ATP5E, MIR4756, MIR4532, MIR5095, FAM210B, TSHZ2, C20orf85, ZNF831, GCNT7, CBLN4, CTCFL, CSTF1, APCDD1L-AS1, GNAS-AS1, CTSZ, CYP24A1, APCDD1L, FAM209A, SPO11, GNAS, FAM209B, SUMO1P1, MIR296, MC3R, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP4R1L, RBM38, ZFP64, DOK5, PMEPA1, CASS4, RAB22A, BMP7, AURKA, TFAP2C, ZNF217, NPEPL1, TUBB1, ZBP1, RAE1, BCAS1, STX16, VAPB NA NA NA NA NA NA NA NA NA LTS-040 ) 0.378320844112575 113 0.0843578555180881 1.83377617522462 3660 0.490308927712198 8 5 3 -6.8476837577547 LTS-040 NA NA NA NA LTS-040 chr20 57829302 57831434 2133 * ZNF831 0 1 NA 1.93639025673869 42 0.962798314933141 8 8 0 -5.76441069456584 LTS-040 chr20 57831435 58497574 666140 * c(LOC100506384, SYCP2, PHACTR3, ZNF831, EDN3) 0.231549054940041 8 0.187378103233618 1.80778478266252 413 0.752906767918673 7 6 1 -6.73556541020335 LTS-040 chr20 58497575 58511876 14302 * c(SYCP2, FAM217B) NA 0 NA 0.837 1 NA NA NA NA NA LTS-040 chr20 58511877 58646505 134629 * c(C20orf197, PPP1R3D, CDH26, FAM217B) 0.254396787621865 2 0.0169705627484772 1.01176536359036 340 0.231278979059448 2 2 0 -7.00781460473858 LTS-040 chr20 58646506 58647131 626 * C20orf197 0.335 1 NA 1.08317451946832 15 0.939084726640533 4 4 0 -5.76441320424166 LTS-040 chr20 58647132 59225064 577933 * c(MIR4533, C20orf197, MIR646HG) NA 0 NA 1.09468580090868 46 0.239080395994302 4 NA NA -5.7977965289765 LTS-040 chr20 59225065 60808530 1583466 * c(CDH4, MIR1257, HRH3, LSM14B, SS18L1, MTG2, MIR646HG, PSMA7, TAF4) 0.414461218476167 19 0.0595926719463694 1.32901968231491 637 0.316786838527652 5 3 2 -6.74668096115072 LTS-040 chr20 60808531 60831128 22598 * OSBPL2 NA 0 NA 1.64 1 NA NA NA NA NA LTS-040 chr20 60831129 60869680 38552 * OSBPL2 0.368 1 NA 1.97891257181783 77 0.362899229802316 8 8 0 -5.7644105724511 LTS-040 chr20 60869681 60871241 1561 * OSBPL2 NA 0 NA 1.88410417964854 29 0.178006904720235 8 NA NA -5.76447682773665 LTS-040 chr20 60871242 60871253 12 * OSBPL2 NA 0 NA 2.48 1 NA NA NA NA NA LTS-040 chr20 60871254 60887581 16328 * c(ADRM1, LAMA5, OSBPL2) 0.241 1 NA 2.71115229927585 119 0.530471003355452 12 12 0 -5.76442748256072 LTS-040 chr20 60887582 62272325 1384744 * c(SLCO4A1-AS1, DPH3P1, LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, MIR4758, LINC00659, OGFR-AS1, TCFL5, OGFR, DIDO1, CHRNA4, BHLHE23, NKAIN4, MIR1-1HG, COL9A3, GATA5, RBBP8NL, EEF1A2, C20orf166-AS1, GMEB2, SLCO4A1, KCNQ2, LAMA5, MIR1-1, MIR124-3, MIR133A2, NTSR1, STMN3, YTHDF1, GID8, MRGBP, ARFGAP1, PTK6, COL20A1, RPS21, SLC17A9, LOC63930, SRMS, HAR1A, HAR1B, FNDC11, PPDPF, BIRC7, CABLES2, HELZ2) 0.283354181476093 97 0.0640631987012439 2.67587704769966 3052 0.718935114454618 12 9 3 -6.73523608316026 LTS-040 chr20 62272326 62272483 158 * STMN3 NA 0 NA 1.922 1 NA NA NA NA NA LTS-040 chr20 62272484 62872271 599788 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, LKAAEAR1, PRPF6, NPBWR2, LINC00176, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, TCEA2, MIR647, TPD52L2, DNAJC5, ZGPAT, TNFRSF6B) 0.298068148780081 51 0.0419839465118024 2.43799541199248 1647 0.556476858547723 11 8 3 -6.75966027085241 LTS-040 chr20 62872272 62959313 87042 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 2.45285440858153 119 0.896700311743744 10 NA NA -5.76447935323613 LTS-040 chr21 9825764 9825838 75 * MIR3648-1 0.298 1 NA 0.217 1 NA NA NA NA NA LTS-040 chr21 9825839 11059877 1234039 * c(TEKT4P2, MIR3687-1, MIR3648-1, BAGE, TPTE, BAGE3) 0.33635097457347 37 0.0915211129418459 0.657810098521057 176 0.574518118321103 1 1 0 -6.77127454520356 LTS-040 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 0.983326294828442 5 0.0926428626500714 3 NA NA -5.76443975537964 LTS-040 chr21 14745307 15537727 792421 * c(MIR3156-3, LIPI, POTED, ANKRD20A11P, NA) 0.338 1 NA 0.682863523148248 97 0.213966831501562 2 2 0 -5.94586993953605 LTS-040 chr21 15537728 48084820 32547093 * c(LOC100129027, KRTAP25-1, LOC100133286, KRTAP20-4, KRTAP22-2, KRTAP21-3, IL10RB-AS1, GRIK1-AS2, MIR4327, MIR3197, ITGB2-AS1, LINC01549, PAXBP1-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, DSCAM-AS1, LINC00159, MIR4760, MIR4759, RWDD2B, LRRC3-AS1, DIP2A-IT1, RNU6-67P, BRWD1-AS1, SAMSN1-AS1, COL18A1-AS2, DSCAM-IT1, OLIG2, DSCR4, DSCR3, B3GALT5, ADARB1, USP16, CCT8, WDR4, FTCD, BTG3, HSF2BP, ADAMTS5, LINC00310, NA NA NA NA NA NA NA NA NA LTS-040 LINC00313, B3GALT5-AS1, TSPEAR-AS2, MCM3AP-AS1, MIR155HG, CYYR1, OLIG1, LINC00161, COL6A1, COL6A2, KRTAP13-1, TCP10L, CHODL, CRYAA, CSTB, LIPI, ABCC13, LCA5L, IGSF5, SIK1, LINC00479, UMODL1-AS1, CXADR, DSCAM, RCAN1, DYRK1A, PLAC4, LINC00189, ERG, ETS2, RRP1B, DIP2A, POFUT2, ICOSLG, MORC3, CLDN14, C21orf91-OT1, LINC00314, KRTAP15-1, GABPA, DSCR9, NA, BACE2, DSCR10, C2CD2, LTN1, GART, CLDN17, D21S2088E, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LINC00307, LINC00515, KRTAP13-4, LINC00323, LINC00319, AATBC, GRIK1, N6AMT1, USP25, DNMT3L, DONSON, HUNK, HLCS, HMGN1, AIRE, PRMT2, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, LOC339622, IFNAR1, IFNAR2, IFNGR2, APP, KRTAP12-2, KRTAP12-1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 KRTAP10-10, IL10RB, ITGB2, KCNE1, KCNJ6, KCNJ15, PICSAR, LINC00317, COL18A1-AS1, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, LINC00320, LOC388813, MIR99AHG, KRTAP26-1, LINC00114, LSS, MIRLET7C, MIR125B2, MIR155, MIR99A, MX1, MX2, NCAM2, NDUFV3, ZBTB21, PCNT, PCP4, PIGP, PDE9A, PFKL, ATP5J, PKNOX1, UBASH3A, RIPPLY3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ATP5O, BRWD1, SLC37A1, RBM11, PCBP3, C21orf58, YBEY, LINC00160, SMIM11A, C21orf62-AS1, MIS18A, LINC00158, CHODL-AS1, TSPEAR, LINC00113, LINC00112, LINC00111, SETD4, FAM3B, RIPK4, CLIC6, LINC00308, MRPL39, C21orf91, DNAJC28, C21orf62, MRAP, TMPRSS15, C21orf59, AGPAT3, MAP3K7CL, BACH1, SCAF4, PWP2, JAM2, EVA1C, S100B, PRDM15, SAMSN1, LOC642852, GRIK1-AS1, KRTAP24-1, KRTAP27-1, SH3BGR, ITSN1, TMPRSS3, SIM2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MRPS6, SLC5A3, SLC19A1, SUMO3, SOD1, SON, SNORA80A, HSPA13, TFF1, TFF2, TFF3, TIAM1, TRAPPC10, TMPRSS2, TRPM2, TTC3, LINC00163, SSR4P1, KRTAP19-8, LINC01548, U2AF1, UBE2G2, WRB, PTTG1IP, C21orf2, TMEM50B, MIR802, RUNX1-IT1, COL18A1, LRRC3, NRIP1, CHAF1B, C21orf33, SPATC1L, LINC01547, DSCR8, URB1-AS1, FAM207A, PDXK, RRP1, RUNX1, PSMG1, CBR1, CBR3, CBS, SYNJ1, MCM3AP, RSPH1, UMODL1, CLDN8, PAXBP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ADAMTS1, ABCG1, URB1, CRYZL1, DOPEY2, KCNE2) 0.399960914043873 578 0.0797368784105238 0.773425291693267 19264 0.420374202479752 2 1 1 -6.80520584886132 LTS-040 NA NA NA NA LTS-040 chr21 48084821 48084993 173 * PRMT2 NA 0 NA 0.929242704272379 5 0.00734846922834954 3 NA NA -5.76982843948714 LTS-040 chr22 16157762 24340955 8183194 * c(DDTL, MIR301B, CECR7, CECR5-AS1, FLJ41941, MIR1286, MIR1306, MIR3198-1, IGLL5, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, TUBA3FP, GAB4, C22orf39, TANGO2, ZNF280A, COMT, CRKL, ZNF280B, CCT8L2, XKR3, LINC00895, LINC00896, AIFM3, YDJC, ZDHHC8P1, C22orf15, CCDC116, DDT, HIC2, PRAME, TSSK2, SDF2L1, PPIL2, IL17RA, ANKRD62P1-PARP4P3, POTEH, BCL2L13, GSTTP1, DGCR11, DGCR9, POM121L1P, DGCR5, DGCR10, FBXW4P1, NA NA NA NA NA NA NA NA NA LTS-040 POM121L4P, RGL4, GGT3P, TRMT2A, RSPH14, HSFY1P1, CECR6, CECR5, CECR3, CECR2, GNAZ, LOC284865, MIF-AS1, GSC2, POM121L8P, YPEL1, ZDHHC8, VPREB3, SERPIND1, IGLL1, PI4KAP2, TPTEP1, CCDC188, LRRC74B, BCRP2, CHCHD10, MIR130B, MIR185, ARVCF, MIF, MMP11, THAP7-AS1, P2RX6P, DRICH1, MED15, TUBA8, CECR1, ATP6V1E1, PI4KA, DGCR8, GNB1L, PEX26, MAPK1, PRODH, MICAL3, RANBP1, BCR, BID, TMEM191C, LL22NC03-63E9.3, CES5AP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 MRPL40, RTN4R, SLC7A4, SLC25A1, SMARCB1, SLC2A11, TBX1, MIR648, CLDN5, MIR650, TMEM191B, PI4KAP1, HIRA, NA, UBE2L3, UFD1L, VPREB1, ZNF70, ZNF74, C22orf29, THAP7, OR11H1, DGCR6, LZTR1, CLTCL1, DGCR14, CDC45, SLC25A18, TMEM191A, KLHL22, DGCR6L, RIMBP3, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, SNAP29, RAB36, PPM1F, BMS1P20, DGCR2) 0.430060891833105 311 0.0709419400861611 0.795211929141768 8913 0.224025888512757 2 1 1 -6.7671969427272 LTS-040 NA NA NA NA LTS-040 chr22 24340956 24342340 1385 * GSTTP1 NA 0 NA 1.23 1 NA NA NA NA NA LTS-040 chr22 24342341 24384316 41976 * c(GSTTP1, GSTT1, LOC391322) NA 0 NA 1.50204099894226 57 0.332606216663803 6 NA NA -5.76495718124085 LTS-040 chr22 24384317 24400148 15832 * GSTTP2 NA 0 NA 0.728 1 NA NA NA NA NA LTS-040 chr22 24400149 25625527 1225379 * c(LOC100128531, SGSM1, ADORA2A, CRYBB2, CRYBB3, SPECC1L, CABIN1, TMEM211, GGT1, GGT5, POM121L9P, LRRC75B, PIWIL3, UPB1, SUSD2, BCRP3, ADORA2A-AS1, POM121L10P, GSTTP2, SNRPD3, TOP1P2, GUCD1, KIAA1671) 0.423255813008801 33 0.0897576387396706 0.77967525493686 1480 0.193482889498479 2 1 1 -6.73352439836207 LTS-040 chr22 25625528 25855670 230143 * c(CRYBB2, CRYBB2P1, IGLL3P, LRP5L) 0.313736006700579 5 0.0460814496299758 1.16229720143493 60 0.272978944160172 4 3 1 -6.81209187594981 LTS-040 chr22 25855671 25961012 105342 * c(CRYBB2P1, GRK3) NA 0 NA 0.526 1 NA NA NA NA NA LTS-040 chr22 25961013 51064039 25103027 * c(LINC01310, LOC100130899, NDUFA6-AS1, CHKB-AS1, LINC00899, MIR1249, MIR1281, MIR548J, HMGXB4, MIR3200, MIR3201, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3619, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, NUP50-AS1, MIR4763, MIR4534, MIR4762, MIR4766, MIR4764, MIR4535, ZNRF3-AS1, EFCAB6-AS1, APOBEC3A_B, DNAL4, SF3A1, PKDREJ, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, NA NA NA NA NA NA NA NA NA LTS-040 NUP50, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHKB, CHEK2, PACSIN2, PHF21B, KLHDC7B, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, EMID1, ANKRD54, CPT1B, APOBEC3D, SELENOM, CRYBA4, CRYBB1, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, PNPLA5, PRR34-AS1, CDPF1, GTSE1-AS1, CYP2D7, CYP2D6, GRK3, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 WBP2NL, POLR3H, CYB5R3, TYMP, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, FBLN1, MORC2, TNRC6B, GRAMD4, TTLL12, MLC1, ZC3H7B, KIAA0930, TTC28, GCAT, CBX6, NPTXR, PES1, CBX7, SLC16A8, SEC14L2, MAPK8IP2, RBFOX2, SEZ6L, RASD2, PATZ1, SH3BP1, PLXNB2, PITPNB, PISD, OSBP2, MAFF, BRD1, ARHGAP8, APOL2, AP1B1P1, TFIP11, PRR14L, SERHL2, BPIFC, XRCC6, C22orf31, TBC1D22A, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TTLL1, SAMM50, ATXN10, FAM19A5, TXN2, TMEM184B, SULT4A1, GGA1, RIBC2, ARFGAP3, SEC14L3, RNU12, ATP5L2, SNORD43, INPP5J, SMC1B, CYTH4, CSDC2, RRP7A, MCAT, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, LOC284933, CARD10, PARVB, NCAPH2, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, C22orf34, IL2RB, KCNJ4, SDC4P, CHKB-CPT1B, OGFRP1, LINC00207, LGALS1, LGALS2, LIF, LIMK2, LOC400927, MIRLET7BHG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 LINC00898, IL17REL, SRRD, MIRLET7A3, MIRLET7B, MIR33A, ARSA, LINC00229, DENND6B, MB, PIM3, MCM5, MFNG, MGAT3, MN1, MPST, MIAT, SHISA8, ODF3B, MYH9, NAGA, ATF4, NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, GTSE1, MTFP1, PDGFB, PMM1, A4GALT, POLR2F, MOV10L1, MIEF1, PPARA, TUG1, FAM118A, TTC38, CCDC157, PRR34, PRR5-ARHGAP8, MIOX, PRR5, TRMU, ZMAT5, SEPT3, MAPK11, EIF4ENIF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 PANX2, TOMM22, PDXP, ASPHD2, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, MAPK12, SBF1, BIK, XPNPEP3, PARVG, SYCE3, FAM227A, CERK, EFCAB6, SLC5A1, SMTN, SLC5A4, GATSL3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TSPO, TIMP3, MIR658, MIR659, TST, SEC14L6, LOC730668, UPK3A, WNT7B, XBP1, YWHAH, MPPED1, CENPM, ALG12, NOL12, CRELD2, C22orf46, KCTD17, CCDC134, ADM2, FOXRED2, BAIAP2L2, SCUBE1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 TRABD, PNPLA3, APOL6, APOL5, APOL4, APOL3, SYN3, SELENOO, L3MBTL2, TBC1D10A, HDAC10, PLA2G6, KREMEN1, ZNRF3, ASCC2, LDOC1L, POLDIP3, TPST2, C22orf23, MYO18B, GALR3, PHF5A, NIPSNAP1, KIAA1644, KIAA1656, MICALL1, TUBGCP6, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, HPS4, NA, LMF2, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, RRP7BP, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, CELSR1, DEPDC5, PPP6R2, SFI1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ZBED4, JOSD1, RBX1, SCO2) 0.438520549873591 680 0.0761596032016786 0.778160502572176 27959 0.209833225769965 2 1 1 -6.75436145802309 LTS-040 NA NA NA NA LTS-040 chr22 51064040 51220846 156807 * c(RABL2B, RPL23AP82, ARSA, ACR, SHANK3) NA 0 NA 0.72689868890886 289 0.202470452465271 2 NA NA -5.77619130279227 LTS-040 chrX 2699993 2700027 35 * XG 0.22 1 NA 1.031 1 NA NA NA NA NA LTS-040 chrX 2700028 11790301 9090274 * c(LINC01546, CLDN34, MIR4770, MIR4767, MSL3, CLCN4, FAM9A, FAM9B, MXRA5, AMELX, VCX, HCCS, ARSH, SHROOM2, ANOS1, LOC389906, ARHGAP6, STS, ARSD, ARSE, ARSF, VCX3B, MID1, GPR143, VCX2, VCX3A, WWC3, PRKX, NLGN4X, TBL1X, MIR651, XG, PUDP, PNPLA4, GYG2) 0.281176102058518 59 0.0819300566979656 0.683183598237111 2721 0.197702144388689 2 2 0 -8.66341387019524 LTS-040 chrX 11790302 11790307 6 * MSL3 NA 0 NA 0.539 1 NA NA NA NA NA LTS-040 chrX 11790308 14708944 2918637 * c(GS1-600G8.3, LINC01203, MSL3, TCEANC, FAM9C, EGFL6, GLRA2, GPM6B, TLR8-AS1, TLR7, TLR8, GEMIN8, PRPS2, TRAPPC2, TMSB4X, OFD1, ATXN3L, RAB9A, FRMPD4) 0.315153904719657 23 0.0814869954948801 0.617919025441055 1290 0.144943344931311 1 1 0 -7.03669496475355 LTS-040 chrX 14708945 14708948 4 * GLRA2 NA 0 NA 0.784 1 NA NA NA NA NA LTS-040 chrX 14708949 28807615 14098667 * c(SUPT20HL1, PHKA2-AS1, SCARNA9L, MIR23C, PIR-FIGF, MIR4768, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, IL1RAPL1, CA5B, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, ASB11, ASB9, ZNF645, MOSPD2, MAGEB6, DDX53, SUPT20HL2, ARX, EIF1AX, EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, GLRA2, MAGEB18, GRPR, SH3KBP1, CA5BP1, DCAF8L2, MAGEB5, MAP3K15, YY2, NHS, NA NA NA NA NA NA NA NA NA LTS-040 MBTPS2, PDHA1, PDK3, PHEX, PHKA2, PIGA, POLA1, PPEF1, TXLNG, CTPS2, TMEM27, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, MAGEB17, BMX, SMS, SCARNA23, CDKL5, LOC729609, ZFX, APOO, S100G, KLHL15, ZRSR2, PIR, INE2, AP1S2, REPS2, SYAP1, PCYT1B) 0.243687330506462 61 0.120850157863934 0.677823098631798 6818 0.21024881110489 2 2 0 -9.20474435484419 LTS-040 NA NA NA NA LTS-040 chrX 28807616 29301101 493486 * IL1RAPL1 NA 0 NA 0.796 1 NA NA NA NA NA LTS-040 chrX 29301102 34645438 5344337 * c(IL1RAPL1, FAM47A, DMD, NR0B1, TAB3, GK, MAGEB1, MAGEB2, MAGEB3, MAGEB4, FTHL17, CXorf21, TMEM47) 0.441577897429069 16 0.120198984327378 0.9247252893156 1204 0.219989372912327 3 2 1 -7.05010304410647 LTS-040 chrX 34645439 47004923 12359485 * c(LOC100132831, ATP6AP2, FUNDC1, MAGEB16, CYBB, CXorf38, DDX3X, FAM47B, NA, HYPM, GPR82, GPR34, LINC01281, CFAP47, LANCL3, MPC1L, LOC392452, ZNF674-AS1, MIR221, MIR222, MAOA, MAOB, FTH1P18, FAM47C, NDP, OTC, NDUFB11, BCOR, KRBOX4, PRRG1, CHST7, MID1IP1, NYX, RP2, RPGR, DUSP21, ZNF674, NA, DYNLT3, TSPAN7, LINC01545, KDM6A, XK, CXorf36, EFHC2, PPP1R2P9, USP9X, RBM10, TMEM47, SRPX, SLC9A7, CASK, RGN, NA NA NA NA NA NA NA NA NA LTS-040 MED14, SYTL5, JADE3) 0.275916884706428 52 0.0911672319310995 0.67599937919754 4241 0.1876547610806 2 2 0 -9.50366013671233 LTS-040 NA NA NA NA LTS-040 chrX 47004924 47006712 1789 * RBM10 NA 0 NA 0.808 1 NA NA NA NA NA LTS-040 chrX 47006713 53350561 6343849 * c(GAGE12F, GAGE8, SNORA11C, HDAC6, GAGE12D, UXT-AS1, MIR500B, MIR4769, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, XAGE3, XAGE5, NUDT10, ELK1, IQSEC2, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX6, SSX7, SSX8, SSX9, CCDC22, ERAS, ZNF81, ARAF, KCND1, SPACA5, USP27X, CXXC1P1, GLOD5, PRICKLE3, MIR188, SPANXN5, TBC1D25, FOXP3, CDK16, CFP, PLP2, NA NA NA NA NA NA NA NA NA LTS-040 GPR173, NUDT11, OTUD5, GRIPAP1, ZNF630, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, TSPYL2, NA, GAGE2B, GAGE13, WDR13, PORCN, XAGE1B, SSX1, SSX5, SUV39H1, SYN1, SYP, MIR532, TFE3, TIMP1, MIR660, FAM156B, GAGE12J, GAGE2D, GAGE2A, UBA1, SLC35A2, WAS, ZNF182, ZNF41, ZNF157, CACNA1F, MAGIX, MAGED4B, USP11, RBM10, KDM5C, UXT, CCNB3, INE1, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, MAGED1, PAGE4 NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ) 0.309572991043781 46 0.101303504381635 0.706413247075442 5848 0.178348329684392 2 2 0 -7.97900828820882 LTS-040 NA NA NA NA LTS-040 chrX 53350562 53401079 50518 * SMC1A NA 0 NA 1.04 1 NA NA NA NA NA LTS-040 chrX 53401080 56101122 2700043 * c(MTRNR2L10, MIR4536-1, HUWE1, RRAGB, MAGED2, FOXR2, PAGE3, RIBC1, USP51, PAGE2, ALAS2, FGD1, PHF8, APEX2, MAGEH1, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, PFKFB1, GNL3L, FAM120C, WNK3, SNORA11, TRO, SMC1A, TSR2, FAM104B, PAGE5) 0.353302172072669 19 0.151209045491983 0.944339661084353 2724 0.232206346428002 3 2 1 -6.81293022237298 LTS-040 chrX 56101123 56259415 158293 * KLF8 NA 0 NA 0.629 1 NA NA NA NA NA LTS-040 chrX 56259416 56590522 331107 * c(KLF8, UBQLN2) NA 0 NA 0.643875163617666 62 0.1079960888592 1 NA NA -5.9345319494601 LTS-040 chrX 56590523 57622607 1032085 * c(FAAH2, ZXDB, SPIN3, UBQLN2, UQCRBP1, SPIN2B, SPIN2A, LINC01420) 0.425562233235108 7 0.0790346518337127 1.04526599655116 315 0.248320666543108 4 2 2 -6.87561982526334 LTS-040 chrX 57622608 57937169 314562 * c(ZXDB, ZXDA) NA 0 NA 1.03463839615841 125 0.207998581881022 3 NA NA -5.7771827786946 LTS-040 chrX 61999880 63413059 1413180 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0.436 1 NA 1.13762324720549 395 0.283840542108542 4 4 0 -5.77795698462165 LTS-040 chrX 63413060 101473011 38059952 * c(MIR374B, ARMCX4, UBE2DNL, FTX, MIR4328, MIR374C, MIR676, RPL36A-HNRNPH2, CDX4, CYSLTR1, CHM, VSIG4, DACH2, COX7B, MAP2K4P1, AMER1, APOOL, HDX, OTUD6A, UPRT, MAGEE2, TCEAL2, PABPC5, ASB12, CSTF2, CYLC1, CXorf65, AWAT1, AWAT2, ZDHHC15, TCEAL6, TIMM8A, FAM46D, DIAPH2, DLG3, DRP2, EDA, EFNB1, ZCCHC5, ABCB7, KIF4A, CENPI, BRWD3, ITGB1BP2, NOX1, GJB1, FAM155B, INGX, GLA, SRPX2, PCDH11X, RPS6KA6, P2RY10, NA NA NA NA NA NA NA NA NA LTS-040 CXCR3, LPAR4, YIPF6, TTC3P1, FAM133A, SNX12, RPA4, HNRNPH2, RGAG4, NHSL2, PABPC1L2A, KIAA2022, BEX5, ZC3H12B, SATL1, DGAT2L6, RAB41, IGBP1, IL2RG, AR, ZCCHC13, FLJ44635, ARL13A, XKRX, ARR3, MIR223, FOXO4, LINC00891, RPS26P11, PGAM4, XRCC6P5, MIR374A, CITED1, MSN, NAP1L2, NAP1L3, NONO, MIR384, OPHN1, P2RY4, TBX22, RLIM, PDZD11, PBDC1, ARMCX1, ARMCX3, TAF9B, PGK1, PHKA1, PIN4, CPXCR1, CHIC1, ATP7A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 NLGN3, TAF7L, ARMCX6, POU3F4, ATRX, ERCC6L, GDPD2, JPX, MTMR8, HDAC8, ZC4H2, NXF5, KLHL4, TEX11, PCDH19, MAGEE1, TMEM35A, EDA2R, RPL36A, BCYRN1, RPS4X, TNMD, PJA1, BRDTP1, SH3BGRL, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, BTK, TSPAN6, XIST, ZNF711, HMGN5, TRMT2B, POF1B, LAS1L, FRMD8P1, MAGT1, ZMAT1, GPR174, OGT, SLC7A3, FGF16, TGIF2LX, ZMYM3, TSIX, ACRC, SYTL4, ITM2A, STARD8, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 ARMCX2, HEPH, MED12) 0.417170778254701 98 0.098107454818337 1.07941519846192 12844 0.298862239663861 4 2 2 -8.26986873154349 LTS-040 NA NA NA NA LTS-040 chrX 101473012 101473017 6 * character(0) NA 0 NA 0.689 1 NA NA NA NA NA LTS-040 chrX 101473018 101625090 152073 * character(0) NA 0 NA 0.582463993176554 41 0.295149953620107 1 NA NA -5.76441148104077 LTS-040 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.886 1 NA NA NA NA NA LTS-040 chrX 101768565 111625502 9856938 * c(LINC00630, TRPC5OS, ARMCX5-GPRASP2, MIR3978, TMSB15A, MID2, GPRASP2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, FAM199X, RAB40A, H2BFWT, DCX, TSC22D3, NRK, TMEM31, ACSL4, KCNE5, IL1RAPL2, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, GUCY2F, TCEAL5, MORF4L2-AS1, VSIG1, ZCCHC16, SLC25A53, LINC00890, GLRA4, PAK3, TCEAL9, RAB9B, PLP1, NUP62CL, TBC1D8B, CXorf57, RBM41, BEX1, NXT2, NXF4, NXF3, TEX13B, TEX13A, BEX4, NA NA NA NA NA NA NA NA NA LTS-040 PRPS1, TCEAL7, PSMD10, RGAG1, ZCCHC18, ARMCX5, SERPINA7, SNORD96B, TDGF1P3, TRPC5, RNF128, MORC4, ALG13, TCEAL4, ESX1, BHLHB9, CAPN6, TMEM164, BEX2, IRS4, TCEAL3, CLDN2, TCEAL8, CHRDL1, RIPPLY1, TCEAL1, MORF4L2, GPRASP1, AMMECR1) 0.389407211789271 33 0.169265189999168 1.08996872513474 5679 0.265086844609866 4 2 2 -7.24122359351749 LTS-040 NA NA NA NA LTS-040 chrX 111625503 118109312 6483810 * c(MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, MIR764, MIR4329, SLC6A14, RBMXL3, DOCK11, AMOT, ZCCHC12, AGTR2, CT83, HTR2C, ZCCHC16, LHFPL1, IL13RA1, IL13RA2, LUZP4, PLS3, WDR44, MIR448, LRCH2, SNORA35, LONRF3, KLHL13) 0.447183852302835 24 0.0378222147360018 0.933854801547619 1796 0.227503404178444 3 2 1 -7.97309989590766 LTS-040 chrX 118109313 120505002 2395690 * c(ZBTB33, SLC25A5-AS1, PGRMC1, AKAP14, RHOXF1, NKAPP1, SLC25A43, SEPT6, ATP1B4, CT47A11, SNORA69, GLUD2, MCTS1, C1GALT1C1, SLC25A5, SOWAHD, LAMP2, NDUFA1, TMEM255A, NKRF, KIAA1210, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, LONRF3, CUL4B) 0.428510909482767 20 0.0441305181431053 1.03280720643223 1839 0.250595636393045 4 2 2 -7.11301678912909 LTS-040 chrX 121376119 136113464 14737346 * c(MIR450B, MIR934, LINC00892, LINC00633, TEX13C, PRR32, LINC00629, HS6ST2-AS1, TENM1, SLC9A6, ENOX2, STAG2, PLAC1, UTP14A, DCAF12L1, ADGRG4, ACTRT1, GPR119, ARHGAP36, FAM122B, FAM122C, ELF4, INTS6L, ZNF449, GPC4, FHL1, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, FIRRE, GRIA3, HPRT1, XIAP, DCAF12L2, OR13H1, CCDC160, IGSF1, SMIM10L2A, SH2D1A, MIR106A, MIR19B2, MIR92A2, FAM127C, CT45A3, CT45A5, MIR424, OCRL, NA NA NA NA NA NA NA NA NA LTS-040 ZDHHC9, TFDP3, VGLL1, RBMX2, STK26, CT45A6, CT45A1, SASH3, CT55, MIR450A1, SAGE1, ZNF280C, MBNL3, MOSPD1, THOC2, MIR363, MIR20B, MIR18B, MIR450A2, MIR503, RAP2C, BCORL1, SMIM10, SMIM10L2B, SMARCA1, MIR542, BRS3, CT45A2, XPNPEP2, ZNF75D, MAP7D3, GPR101, USP26, PHF6, MIR503HG, APLN, FAM127A, SLC25A14, HS6ST2, FRMD7, AIFM1, MMGT1, RAB33A, ARHGEF6, CD40LG) 0.410268243164171 56 0.144904733594806 0.93348404689467 6216 0.300532489842005 3 2 1 -6.96651392675436 LTS-040 NA NA NA NA LTS-040 chrX 136113465 140008454 3894990 * c(FGF13-AS1, MIR320D2, CDR1, LINC00889, F9, FGF13, ATP11C, LINC00632, CXorf66, LOC389895, MCF2, MIR504, MIR505, SOX3, SRD5A1P1, ZIC3, GPR101) NA 0 NA 0.920272673703795 799 0.192186587661965 3 NA NA -6.00535879103392 LTS-040 chrX 140008455 140269955 261501 * c(NA, LDOC1) NA 0 NA 0.384 1 NA NA NA NA NA LTS-040 chrX 140269956 140270418 463 * LDOC1 0.23 1 NA 0.569370706461502 9 0.150668325949565 1 1 0 -5.76441583276849 LTS-040 chrX 140270419 153707202 13436784 * c(FMR1-AS1, MIR890, MIR891B, MIR888, MIR892B, MIR891A, MIR892A, CXorf51A, CSAG4, LINC00893, CXorf51B, LINC00894, NA, NA, MIR718, MIR2114, MIR514B, MIR3202-2, MIR4330, MIR3202-1, MAMLD1, MAGEA10-MAGEA5, BCAP31, MAGEA8-AS1, CETN2, ZNF275, TREX2, PNMA5, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, PNCK, ZFP92, TEX28, CSAG1, FMR1NB, NA, DNASE1L1, DUSP9, EMD, VMA21, ABCD1, FLNA, FMR1, AFF2, LDOC1, GABRA3, GABRE, OPN1MW, NA NA NA NA NA NA NA NA NA LTS-040 SRPK3, GDI1, SNORA70, PNMA3, HCFC1, HMGB3, IDH3G, IDS, IRAK1, L1CAM, UBE2NL, ARHGAP4, MIR105-1, MIR105-2, MAGEA1, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MECP2, SPANXN4, MTM1, ATP2B3, SPANXN1, SPANXN2, NSDHL, MAGEC2, PLXNB3, ATP6AP1, CXorf40B, AVPR2, PLXNA3, HAUS7, GABRQ, MIR452, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, PDZD4, OPN1LW, RENBP, RPL10, SPANXA2-OT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-040 BGN, SPANXC, SLC6A8, SSR4, TAZ, MIR767, ZNF185, PRRG3, NAA10, TMEM187, LAGE3, TKTL1, CD99L2, TMEM185A, SLITRK2, MTMR1, FATE1, FAM50A, TMEM257, CXorf40A, FAM58A, GPR50, MAGEC1) 0.28800563880248 118 0.0867004848270484 0.693743998480871 7273 0.261921252972348 2 2 0 -8.18968190419465 LTS-040 NA NA NA NA LTS-040 chrX 153707203 153707343 141 * LAGE3 NA 0 NA 0.544 1 NA NA NA NA NA LTS-040 chrX 153707344 154505943 798600 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, G6PD, CTAG2, MPP1, MTCP1, FAM3A, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3, UBL4A, LAGE3, SLC10A3, IKBKG) 0.282345386580354 15 0.0997140196476188 0.64898824679073 1265 0.546845328406333 2 2 0 -6.87003068479582 LTS-040 chrX 154505944 154774986 269043 * c(CLIC2, TMLHE) NA 0 NA 0.623907991965765 123 0.176012071272512 1 NA NA -5.78973952455563 LTS-040 chrY 4924430 5491186 566757 * PCDH11Y 0.235 1 NA 0.444035665932692 2 0.643467170879758 0 0 0 -5.78252759052919 LTS-040 chrY 5491187 5608782 117596 * PCDH11Y NA 0 NA 0.211678556533886 24 0.213621499216573 0 NA NA -6.26266936185287 LTS-040 chrY 13309514 21154426 7844913 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) 0.345 1 NA 0.638130692941069 17 0.379338879228214 1 1 0 -6.0314909311861 LTS-040 chrY 21154427 21154528 102 * c(CD24, TTTY14) NA 0 NA 0.935854800926934 3 0.254611468712625 3 NA NA -5.76441212817928 LTS-040 chr1 65893 762273 696381 * c(LOC100288069, LOC729737, OR4F5, LINC00115) 0.333 1 NA 0.768294031673611 19 0.262540411815509 2 2 0 -5.8163822977998 LTS-041 chr1 762274 1603048 840775 * c(LOC100130417, ACAP3, UBE2J2, PUSL1, B3GALT6, MIB2, SAMD11, LOC148413, DVL1, ATAD3C, LINC01342, TTLL10, NOC2L, FAM41C, SSU72, KLHL17, TMEM240, AGRN, FAM132A, RNF223, MIR200A, MIR200B, ANKRD65, SDF4, MXRA8, CPSF3L, C1orf159, AURKAIP1, MRPL20, ATAD3A, MIR429, HES4, SCNN1D, LINC01128, TMEM88B, FNDC10, VWA1, SLC35E2B, TNFRSF4, LINC00115, CPTP, CCNL2, TAS1R3, ATAD3B, PLEKHN1, PERM1, MMP23B, TNFRSF18, ISG15, NA NA NA NA NA NA NA NA NA LTS-041 CDK11B) 0.29890762660183 70 0.13039063859626 0.642231409165052 3024 0.217037375813647 1 1 0 -6.85486868446606 LTS-041 NA NA NA NA LTS-041 chr1 1603049 1606858 3810 * c(SLC35E2B, CDK11B) NA 0 NA 0.44 1 NA NA NA NA NA LTS-041 chr1 1606859 1639048 32190 * c(CDK11A, SLC35E2B, MMP23A, CDK11B) 0.356264328614145 5 0.100360848940212 0.455790404351857 79 0.250700703844538 0 0 0 -6.85261153822685 LTS-041 chr1 1639049 1646768 7720 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.186759076967767 39 0.16011774935097 0 NA NA -5.81658503199834 LTS-041 chr1 1646769 1647806 1038 * c(CDK11A, SLC35E2B, CDK11B) NA 0 NA 0.612 1 NA NA NA NA NA LTS-041 chr1 1647807 1663985 16179 * c(CDK11A, SLC35E2B, CDK11B, SLC35E2) 0.435798234768907 15 0.049885392460643 0.495448476043041 120 0.184710626890481 0 0 0 -7.18892027372596 LTS-041 chr1 1663986 1666125 2140 * c(SLC35E2B, SLC35E2) NA 0 NA 0.706 1 NA NA NA NA NA LTS-041 chr1 1666126 7202351 5536226 * c(LOC100129534, NA, LINC01134, TTC34, MIR4251, MIR4252, MIR4689, MIR4417, RER1, ACOT7, LOC115110, TPRG1L, FAM213B, ACTRT2, PHF13, CCDC27, CALML6, DFFB, MEGF6, FAAP20, CAMTA1, ICMT, GABRD, CHD5, NPHP4, ARHGEF16, GNB1, LOC284661, ZBTB48, C1orf174, TMEM52, GPR153, HES5, SMIM1, RNF207, HES3, LINC00982, WRAP73, PEX10, HES2, PANK4, DNAJC11, PRKCZ, AJAP1, TP73-AS1, PLEKHG5, LRRC47, RPL22, PRDM16, SKI, NADK, NA NA NA NA NA NA NA NA NA LTS-041 MIR551A, TP73, SLC35E2B, LINC01346, MMEL1, NOL9, MORN1, TAS1R1, ESPN, KCNAB2, CFAP74, TNFRSF25, TNFRSF14, THAP3, PLCH2, CEP104, KLHL21, SLC35E2) 0.316111084915638 108 0.12935335217777 0.638049625450811 5223 0.28435309286684 1 1 0 -7.12220914688047 LTS-041 NA NA NA NA LTS-041 chr1 7202352 7289686 87335 * CAMTA1 NA 0 NA 1.057 1 NA NA NA NA NA LTS-041 chr1 7289687 15902411 8612725 * c(NPPA-AS1, ENO1-AS1, APITD1-CORT, MIR4632, MTOR-AS1, ANGPTL7, UBE4B, MAD2L2, PDPN, MASP2, UTS2, PARK7, CTRC, FHAD1, RBP7, CLCN6, LRRC38, AADACL3, CORT, C1orf127, SLC2A7, DFFA, TMEM201, TMEM51-AS1, ENO1, CLSTN1, KIF1B, KAZN, CAMTA1, DNAJC16, TARDBP, MTOR, FBXO2, FBXO6, UBIAD1, AADACL4, HNRNPCL1, PRAMEF9, PRAMEF10, TNFRSF9, DRAXIN, CENPS, PRAMEF12, PRAMEF17, PRAMEF4, PRAMEF13, NA, MIR34A, PRAMEF11, PRAMEF6, NA NA NA NA NA NA NA NA NA LTS-041 HNRNPCL2, MTHFR, RERE, NPPA, NPPB, SLC45A1, CELA2B, PEX14, PGD, PIK3CD, PLOD1, EXOSC10, ERRFI1, CASZ1, TMEM51, VPS13D, CTNNBIP1, AGTRAP, DISP3, MIIP, CELA2A, PIK3CD-AS1, PRAMEF19, PRAMEF20, NMNAT1, HNRNPCL3, PRAMEF1, PRAMEF2, SLC2A5, PRAMEF22, NA, SRM, SNORA59B, TNFRSF1B, CA6, PRDM2, EFHD2, AGMAT, GPR157, SPSB1, CASP9, SLC25A33, LZIC, PER3, KIAA2013, DHRS3, C1orf158, VAMP3, FBXO44, TNFRSF8, H6PD, MFN2 NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ) 0.347559701317779 212 0.120526702606985 0.74571309790708 8427 0.250780309421323 2 1 1 -7.85560637019367 LTS-041 NA NA NA NA LTS-041 chr1 15902412 21625613 5723202 * c(LOC100506730, LOC100506801, MINOS1-NBL1, MIR4695, MST1P2, MST1L, PADI2, CROCCP3, CLCNKA, CLCNKB, IFFO2, KLHDC7A, VWA5B1, UBXN10, ARHGEF19, C1orf64, FAM43B, DDOST, ECE1, EPHA2, AKR7A3, SPEN, EMC1, PLEKHM2, OTUD3, DNAJC16, UBR4, ATP13A2, PADI4, AKR7L, TMCO4, SZRD1, PLA2G2D, HSPB7, SLC25A34, ESPNP, PADI1, PLA2G2E, HTR6, LINC01141, FAM131C, PADI6, SPATA21, TMEM82, PLA2G2C, SH2D5, MFAP2, UQCRHL, MINOS1, NA NA NA NA NA NA NA NA NA LTS-041 NBL1, HP1BP3, PAX7, MRTO4, PADI3, PLA2G2A, PLA2G5, FBXO42, RNF186, FBLIM1, PQLC2, ARHGEF10L, CAMK2N1, NBPF1, NECAP2, RCC2, KIF17, RSC1A1, SDHB, RPS14P3, PLA2G2F, PINK1, FLJ37453, ZBTB17, RSG1, MUL1, AGMAT, TAS1R2, ACTL8, CAPZB, DDI2, CROCCP2, IGSF21, AKR7A2, ALDH4A1, EIF4G3, CROCC, CDA) 0.337904194452497 223 0.110993911208928 0.780304526920629 7536 1.35244352734118 2 1 1 -6.88981827665071 LTS-041 NA NA NA NA LTS-041 chr1 21625614 21749804 124191 * c(LOC100506801, ECE1) NA 0 NA 0.372 1 NA NA NA NA NA LTS-041 chr1 21749805 21755255 5451 * character(0) 0.42 1 NA 0.466460817740684 42 0.250147659064914 1 1 0 -5.76695980884861 LTS-041 chr1 21755256 21755596 341 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-041 chr1 21755597 22299831 544235 * c(ALPL, HSPG2, LDLRAD2, RAP1GAP, USP48, NBPF3) 0.382410348322373 27 0.130090380591753 0.813079965934247 1108 0.371818692606143 2 1 1 -6.74030182973853 LTS-041 chr1 22299832 22300103 272 * character(0) NA 0 NA 0.557 1 NA NA NA NA NA LTS-041 chr1 22300104 25599056 3298953 * c(MIR3115, MIR4253, TCEB3-AS1, MIR4684, MIR378F, RCAN3AS, CELA3A, HNRNPR, SRRM1, RCAN3, LYPLA2, CNR2, MYOM3, ZNF436-AS1, IFNLR1, E2F2, EPHA8, EPHB2, KDM1A, CELA3B, FUCA1, GALE, MDS2, CLIC4, SYF2, LOC284632, LINC00339, HMGCL, HTR1D, ID3, NCMAP, WNT4, ASAP3, PNRC2, RSRP1, PITHD1, NIPAL3, GRHL3, IL22RA1, RHD, RPL11, TCEA3, TCEB3, C1QA, C1QB, C1QC, C1orf234, LUZP1, ZNF436, RUNX3, STPG1, ZBTB40, CDC42 NA NA NA NA NA NA NA NA NA LTS-041 ) 0.329039962836096 76 0.125110174604121 0.739140591803616 3967 0.247822611188536 2 1 1 -7.3994693768814 LTS-041 NA NA NA NA LTS-041 chr1 25599057 25599066 10 * c(RSRP1, RHD) NA 0 NA 0.539 1 NA NA NA NA NA LTS-041 chr1 25599067 25656954 57888 * c(RSRP1, RHD) NA 0 NA 0.0717837371394156 77 0.0705983653252883 0 NA NA -11.2371264754511 LTS-041 chr1 25656955 25666923 9969 * c(TMEM50A, RSRP1) NA 0 NA 0.822 1 NA NA NA NA NA LTS-041 chr1 25666924 28116248 2449325 * c(MIR1976, MIR3917, WASF2, CNKSR1, CD52, NUDC, FAM46B, KDF1, PDIK1L, PAQR7, FAM76A, EXTL1, FGR, WDTC1, TMEM50A, STX12, IFI6, ZNF683, LDLRAP1, AHDC1, SFN, GPR3, HMGN2, CATSPER4, TRNP1, CD164L2, STMN1, PAFAH2, ZNF593, GPN2, AIM1L, TMEM57, PIGV, MTFR1L, MAN1C1, SELENON, RHCE, RPS6KA1, GPATCH3, ACTG1P20, LOC646471, CEP85, SLC9A1, SLC30A2, AUNIP, LIN28A, FAM110D, DHDDS, ARID1A, SH3BGRL3, TMEM222, ZDHHC18, NA NA NA NA NA NA NA NA NA LTS-041 NR0B2, TRIM63, SYTL1, FCN3, MAP3K6, UBXN11) 0.36527260562065 75 0.114160755946158 0.76500379918376 4080 0.231248260588232 2 1 1 -7.01827124612472 LTS-041 NA NA NA NA LTS-041 chr1 28116249 28119962 3714 * STX12 NA 0 NA 0.584 1 NA NA NA NA NA LTS-041 chr1 28119963 29387068 1267106 * c(GMEB1, RCC1, RAB42, EPB41, EYA3, DNAJC8, STX12, RNU11, SMPDL3B, OPRD1, YTHDF2, MED18, TRNAU1AP, PPP1R8, XKR8, PTAFR, RPA2, PHACTR4, SCARNA1, SNORA44, SNORA61, TAF12, SNORA16A, SNORD99, SESN2, SNHG3, SNHG12, ATPIF1, THEMIS2) 0.303943974740612 30 0.13031757849334 0.702440581905521 1700 0.194600552811623 1 1 0 -7.40082498755161 LTS-041 chr1 29387069 32280666 2893598 * c(MATN1-AS1, MIR4254, MIR4420, PTPRU, COL16A1, LINC01225, EPB41, FABP3, LINC01226, HCRTR1, SERINC2, TMEM200B, MATN1, MECR, ZCCHC17, PEF1, ADGRB2, TINAGL1, SRSF4, SNORD103C, SNORD103A, LAPTM5, NKAIN1, SPOCD1, SNRNP40, SDC3, PUM1) 0.351176827809256 43 0.0913218542470691 0.790484925269468 2096 0.248237354299606 2 1 1 -6.97275135809387 LTS-041 chr1 32280667 32952408 671742 * c(FAM229A, KHDRBS1, DCDC2B, TXLNA, KPNA6, HDAC1, MTMR9LP, LCK, BSDC1, TMEM39B, IQCC, TMEM234, MARCKSL1, ZBTB8A, ZBTB8B, CCDC28B, PTP4A2, TSSK3, FAM167B, EIF3I, SPOCD1) 0.313329742611327 3 0.122339691024622 0.730484471648453 1211 0.191164917090818 2 1 1 -7.19748828172345 LTS-041 chr1 32952409 35321644 2369236 * c(MIR3605, SMIM12, AZIN2, TMEM54, CSMD2, GJB4, HMGB4, RNF19B, A3GALT2, ZNF362, PHC2, AK2, FNDC5, GJA4, GJB3, GJB5, HPCA, ZBTB8OS, CSMD2-AS1, TRIM62, KIAA1522, RBBP4, S100PBP, ZBTB8A, ZBTB8B, ZSCAN20, SYNC, C1orf94, YARS) 0.329325493470186 45 0.135999357544531 0.90673701921581 2196 0.292090453098068 2 1 1 -6.94945818436715 LTS-041 chr1 35321645 40839472 5517828 * c(MIR4255, MIR3659, TMEM35B, GJA9-MYCBP, MIR5581, ZMPSTE24, PPIE, CAP1, SF3A3, SMIM12, TMCO2, C1orf122, OSCP1, C1orf216, COL8A2, COL9A2, CSF3R, MANEAL, AGO3, AGO4, FHL3, NCDN, MACF1, MYCBP, HEYL, AGO1, TRAPPC3, TEKT2, RSPO1, EPHA10, GRIK3, GNL2, LINC01343, TFAP2E, BMP8A, INPP5B, MTF1, MYCL, NDUFS5, UTP11, HPCAL4, POU3F1, TRIT1, RHBDL2, ADPRHL2, C1orf109, CDCA8, EVA1B, PPT1, MAP7D1, PSMB2, DLGAP3, NA NA NA NA NA NA NA NA NA LTS-041 RLF, CLSPN, OXCT2, RRAGC, SFPQ, KIAA0754, SMAP2, MEAF6, MRPS15, LOC653160, BMP8B, SNORA55, LINC01137, PPIEL, DNALI1, AKIRIN1, YRDC, SH3D21, SNIP1, ZMYM1, KIAA0319L, ZC3H12A, STK40, NT5C1A, MFSD2A, LSM10, PABPC4, ZMYM4, ZMYM6, THRAP3) 0.383123066838538 105 0.133248155943229 1.21058585500858 7053 0.348457904403136 3 2 1 -6.9640665740264 LTS-041 NA NA NA NA LTS-041 chr1 40839473 46383150 5543678 * c(LOC100129924, NFYC-AS1, KDM4A-AS1, SLFNL1-AS1, MIR5584, AKR1A1, TESK2, PPIH, EBNA1BP2, KIF2C, MED8, TOE1, ERMAP, PLK3, CCDC163, ZNF684, KLF17, TMEM125, CLDN19, CFAP57, C1orf210, CCDC24, BTBD19, CCDC17, CTPS1, CITED4, DPH2, EDN2, SLFNL1, FOXJ3, SCMH1, MAST2, SZT2, MMACHC, BEST4, SNORD55, RIMKLA, GUCA2A, GUCA2B, C1orf228, ZFP69, TCTEX1D4, IPP, SVBP, LINC01144, MIR30C1, MIR30E, MPL, SLC2A1-AS1, FAM183A, NA NA NA NA NA NA NA NA NA LTS-041 MUTYH, NASP, NFYC, YBX1, PRDX1, ZNF691, TMEM69, ATP6V0B, RNF220, DMAP1, ZSWIM5, PTPRF, HIVEP3, GPBP1L1, RPS8, P3H1, SMAP2, EXO5, ELOVL1, ST3GAL3, SLC2A1, ZFP69B, SLC6A9, TIE1, CCDC30, RPS15AP10, UROD, ERI3, C1orf50, TMEM53, HECTD3, PPCS, HYI, ZMYND12, HPDL, PTCH2, B4GALT2, EIF2B3, ARTN, KCNQ4, SNORD46, SNORD38A, SNORD38B, IPO13, KDM4A, RIMS3, CDC20) 0.397958784034593 103 0.0862801254164644 1.07499505218066 6700 0.266307877378384 3 2 1 -6.85018662017329 LTS-041 NA NA NA NA LTS-041 chr1 46383151 46424981 41831 * MAST2 NA 0 NA 0.499 1 NA NA NA NA NA LTS-041 chr1 46424982 59096250 12671269 * c(EFCAB14-AS1, MIR761, MKNK1-AS1, LOC100507564, LOC100507634, MROH7-TTC4, MIR4422, MIR4781, LINC00853, TSPAN1, PDZK1IP1, CDKN2C, LRRC41, FAF1, KTI12, OSBPL9, OMA1, LRRC42, DMBX1, TCEANC2, PODN, CPT2, KNCN, MOB3C, GLIS1, CYP4A11, CYP4B1, DAB1, CYP4Z2P, SLC25A3P1, LEXM, DHCR24, DIO1, ELAVL4, C1orf168, TMEM61, CYP4Z1, CDCP2, SLC5A9, CC2D1B, EPS15, FAAH, TTC39A, FOXE3, FOXD2, MAST2, ZCCHC11, USP24, SSBP3, NA NA NA NA NA NA NA NA NA LTS-041 PCSK9, PARS2, ACOT11, CYP4X1, RNF11, CYP4A22, C1orf185, GPX7, FAM151A, FAM159A, TEX38, MROH7, NSUN4, TRABD2B, LDLRAD1, SKINT1L, TACSTD2, MAGOH, ZYG11A, NRDC, ORC1, TXNDC12, MRPL37, HSPB11, CMPK1, LURAP1, YIPF1, SPATA6, C1orf123, TTC22, ECHDC2, POMGNT1, PRKAA2, NDC1, RAB3B, CYB5RL, SCP2, DMRTB1, DMRTA2, ATPAF1, STIL, SLC1A7, COA7, TAL1, TTC4, FAAHP1, C8A, C8B, UQCRH, LRP8, BSND, BEND5, ZYG11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RAD54L, FOXD2-AS1, AGBL4, PRPF38A, PIK3R3, MKNK1, PLPP3, BTF3L4, ZFYVE9, TMEM59, EFCAB14) 0.361834965616702 164 0.128504756303563 0.787477496276457 9571 0.238816590219064 2 1 1 -7.33428244271597 LTS-041 NA NA NA NA LTS-041 chr1 59096251 59120563 24313 * MYSM1 0.235 1 NA 0.822022223346569 5 0.0550772185209094 2 2 0 -5.76751129211024 LTS-041 chr1 59120564 59148219 27656 * MYSM1 0.363474807859103 10 0.087063769732306 0.728364093531399 193 0.258784352825419 3 2 1 -6.7760679642366 LTS-041 chr1 59148220 59150808 2589 * MYSM1 NA 0 NA 1.113 1 NA NA NA NA NA LTS-041 chr1 59150809 65270320 6119512 * c(LINC01135, MIR4794, MIR4711, PATJ, MYSM1, C1orf87, UBE2U, CYP2J2, KANK4, LINC00466, ITGB3BP, FOXD3, ANGPTL3, ALG6, JUN, MGC34796, NFIA, ROR1, HOOK1, PGM1, L1TD1, RAVER2, FGGY, CACHD1, HSD52, USP1, DLEU2L, TM2D1, EFCAB7, ATG4C, DOCK7) 0.278429420751892 43 0.0966025066796327 0.832259336625559 2577 0.230995797861372 2 2 0 -7.1948838202914 LTS-041 chr1 65270321 65270419 99 * RAVER2 NA 0 NA 0.819 1 NA NA NA NA NA LTS-041 chr1 65270420 70671310 5400891 * c(INSL5, GNG12-AS1, MIR1262, MIR3117, MIR3671, IL23R, GADD45A, TCTEX1D1, AK4, SLC35D1, SERBP1, IL12RB2, JAK1, LEPR, C1orf141, MIR101-1, PDE4B, PIN1P1, LEPROT, RAVER2, LRRC40, DEPDC1, GNG12, LRRC7, MIER1, RPE65, WDR78, WLS, SGIP1, DIRAS3, DNAJC6) 0.275997088952325 60 0.114613103785396 0.765470226291385 3091 0.272839992800301 2 2 0 -7.4240813325426 LTS-041 chr1 70671311 70687027 15717 * c(LRRC40, SRSF11) NA 0 NA 0.473 1 NA NA NA NA NA LTS-041 chr1 70687028 70779532 92505 * c(ANKRD13C, SRSF11) 0.35 1 NA 0.498860585066742 213 0.166254869247219 1 1 0 -5.8115230926282 LTS-041 chr1 70779533 70781128 1596 * ANKRD13C NA 0 NA 0.71 1 NA NA NA NA NA LTS-041 chr1 70781129 89409116 18627988 * c(ZRANB2-AS1, PIGK, LINC01364, FPGT-TNNI3K, MIR4423, MIR548AP, NEGR1-IT1, ZRANB2-AS2, IFI44, IFI44L, DNAJB4, HHLA3, SSX2IP, CLCA1, WDR63, ASB17, TYW3, ERICH3, LRRIQ3, CRYZ, SAMD13, C1orf52, CTBS, MGC27382, CTH, SLC44A5, CLCA4, USP33, ADGRL2, LPAR3, DDAH1, MCOLN2, COL24A1, ST6GALNAC3, NEGR1, ZZZ3, AK5, SNORD45B, SNORD45A, GNG5, GTF2B, LINC01140, ACADM, CYR61, MIGA1, UOX, MIR186, LHX8, LINC01555, MSH4, NA NA NA NA NA NA NA NA NA LTS-041 TNNI3K, SH3GLB1, ZNHIT6, GIPC2, MCOLN3, PRKACB, PKN2, KYAT3, PTGER3, PTGFR, ODF2L, DNASE2B, RABGGTB, ADGRL4, LOC646626, SNORD45C, TTLL7, RPF1, ANKRD13C, ST6GALNAC5, SYDE2, LMO4, FPGT, FUBP1, BCL10, NEXN, SELENOF, ZRANB2, CLCA3P, CLCA2, HS2ST1) 0.325737947628039 154 0.124418912996429 0.786031445342612 7006 0.264544639542816 2 1 1 -7.60305021848124 LTS-041 NA NA NA NA LTS-041 chr1 89409117 93309206 3900090 * c(GLMN, GBP4, GBP5, GBP6, HFM1, KIAA1107, LRRC8B, EPHX4, GBP1, GBP2, GBP3, GFI1, SNORA66, ZNF326, BTBD8, BARHL2, GBP7, C1orf146, FAM69A, GBP1P1, FLJ27354, GEMIN8P4, RBMXL1, LRRC8D, KYAT3, SNORD21, RPL5, BRDT, TGFBR3, LOC729930, EVI5, RPAP2, CDC7, ZNF644, LRRC8C) 0.276548118123144 40 0.132207868573775 0.726356861100978 2675 0.214827968494247 2 2 0 -7.92878623094247 LTS-041 chr1 93309207 110950633 17641427 * c(MIR760, LINC01349, LOC100129046, LOC100129138, LOC100129620, CCDC18-AS1, TMEM56-RWDD3, MIR2682, DPYD-AS1, VAV3-AS1, LAMTOR5-AS1, VAV3, LAMTOR5, AHCYL1, HENMT1, OLFM3, CNN3, SLC44A3, ATXN7L2, C1orf194, LRRC39, COL11A1, CSF1, TMEM56, NBPF4, SLC30A7, DBT, PLPPR5, FNDC7, SASS6, UBL4B, AGL, DPYD, DR1, S1PR1, CELSR2, ALG14, EXTL2, F3, MTF2, NTNG1, WDR47, CLCC1, SLC35A3, ABCA4, AKNAD1, ALX3, RWDD3, AMPD2, NA NA NA NA NA NA NA NA NA LTS-041 GCLM, GNAI3, GNAT2, AMY2A, AMY2B, FAM102B, SYPL2, CYB561D1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GPSM2, SLC25A24, DNTTIP2, CCDC18, MYBPHL, KCNC4, FAM69A, SLC6A17, FRRS1, MIR137HG, MIR137, MIR197, FLJ31662, LOC440600, TMED5, SNX7, DPH5, GPR88, TRMT13, PALMD, FNBP1L, PRPF38B, PRMT6, RNPC3, PSMA5, TMEM167B, AMIGO1, KIAA1324, PTBP2, ABCD3, SORT1, SARS, SPATA42, MFSD14A, RBM15, ACTG1P4, NBPF6, SCARNA2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 STXBP3, TAF13, MIR553, LOC729970, LOC729987, VCAM1, EPS8L3, GPR61, BCAR3, PSRC1, STRIP1, CDC14A, RTCA, SLC16A4, ARHGAP29, DNAJA1P5, PLPPR4) 0.34653778648367 106 0.121001941724784 0.777083117848864 8999 0.25930395507187 2 1 1 -7.72049921059333 LTS-041 NA NA NA NA LTS-041 chr1 110950634 110993782 43149 * LAMTOR5-AS1 NA 0 NA 0.708 1 NA NA NA NA NA LTS-041 chr1 110993783 112318585 1324803 * c(LINC01160, FAM212B-AS1, CEPT1, CHI3L2, DDX20, DRAM2, PIFO, C1orf162, ADORA3, CHIAP2, CHIA, KCNA2, KCNA3, KCNA10, KCND3, PGCP1, OVGP1, ATP5F1, LRIF1, FAM212B, RAP1A, CYMP, WDR77, DENND2D, PROK1, CD53) 0.324239791740197 50 0.125417280650293 0.710197475241252 1505 0.28402740944326 2 1 1 -7.18638894398129 LTS-041 chr1 112318586 112318709 124 * KCND3 NA 0 NA 0.793 1 NA NA NA NA NA LTS-041 chr1 112318710 114696366 2377657 * c(AP4B1-AS1, MIR4256, AP4B1, PHTF1, SYT6, HIPK1, AKR7A2P1, MAGI3, PTPN22, FAM19A3, PPM1J, KCND3, RHOC, MOV10, BCL2L15, RSBN1, ST7L, CTTNBP2NL, OLFML3, LOC643355, LOC643441, DCLRE1B, SLC16A1, WNT2B, CAPZA1, LRIG2) 0.29186472681836 29 0.106213930417711 0.766172363164896 2136 0.212470049065833 2 2 0 -7.50249957171482 LTS-041 chr1 114696367 114696411 45 * SYT6 NA 0 NA 1.225 1 NA NA NA NA NA LTS-041 chr1 114696412 116237632 1541221 * c(TSPAN2, BCAS2, SYT6, DENND2C, AMPD1, NGF, NRAS, TRIM33, SYCP1, TSHB, CSDE1, SIKE1, VANGL1) 0.264720897437409 16 0.107342442677629 0.886988450386921 1167 0.248659977644296 2 2 0 -7.03803962385206 LTS-041 chr1 116237633 121116733 4879101 * c(MIR942, MIR320B1, SRGAP2D, WARS2, WDR3, MAN1A2, ADAM30, MAB21L3, HSD3BP4, SPAG17, FCGR1B, PHGDH, HMGCS2, HSD3B1, HSD3B2, IGSF3, HIST2H2BA, NBPF7, ATP1A1, NHLH2, NOTCH2, HAO2, GDAP2, FAM46C, SLC22A15, PTGFRN, LINC00622, FAM72B, TBX15, VTCN1, TRIM45, VANGL1, REG4, CASQ2, TTF2, ATP1A1-AS1, ZNF697, CD2, CD101, CD58) 0.331422909674553 120 0.134203699588325 0.72872734575543 3714 0.365326589680322 2 1 1 -7.29149284228557 LTS-041 chr1 121116734 121129723 12990 * SRGAP2D NA 0 NA 0.641302673123401 15 0.186139732459247 1 NA NA -5.76654307524297 LTS-041 chr1 121129724 121298263 168540 * c(SRGAP2D, EMBP1) NA 0 NA 1.102 1 NA NA NA NA NA LTS-041 chr1 121298264 121313547 15284 * EMBP1 NA 0 NA 1.02325259992554 43 0.255295765765354 3 NA NA -5.76523241282704 LTS-041 chr1 143912360 144013865 101506 * FAM72D 0.308 1 NA 0.832856745913112 5 0.0901831469843451 2 2 0 -5.76554418710982 LTS-041 chr1 144013866 145284673 1270808 * c(NBPF10, NBPF20, NOTCH2NL, LOC653513, NA, PFN1P2, SEC22B, PDE4DIP) 0.322648924751921 81 0.087259072187437 0.877372683789355 744 0.295102684502848 2 1 1 -7.11585022684146 LTS-041 chr1 145284674 146316796 1032123 * c(NBPF10, NBPF20, PIAS3, POLR3C, TXNIP, CD160, LIX1L, HFE2, ANKRD35, NUDT17, RNF115, ANKRD34A, NOTCH2NL, PDZK1, GPR89A, NA, NA, NA, POLR3GL, ITGA10, PEX11B, RBM8A) 0.424047490917892 18 0.0642570410170079 0.9802773212613 1267 0.433416443068631 2 1 1 -6.94179517331202 LTS-041 chr1 146316797 146317623 827 * c(NBPF10, NBPF20, NA, NA, NA) NA 0 NA 1.13 1 NA NA NA NA NA LTS-041 chr1 146317624 147806662 1489039 * c(NBPF10, NBPF20, LINC00624, MIR5087, NBPF12, PDIA3P1, FMO5, GJA5, GJA8, ACP6, GPR89B, PRKAB2, BCL9, NBPF13P, NA, NA, NA, LOC728989, CHD1L) 0.389680803205783 25 0.101395677093914 1.31647583828253 777 0.356137897318748 4 2 2 -6.74333494330467 LTS-041 chr1 147806663 149676575 1869913 * c(FCGR1CP, MIR5087, NBPF14, NBPF15, LINC01138, LOC388692, LINC00869, PPIAL4D, LOC645166, NA, PPIAL4F, PPIAL4E) 0.0983667943430579 2 0.101116269709676 0.777290236434762 101 0.374760938981291 2 2 0 -7.25569764777886 LTS-041 chr1 149676576 149760085 83510 * c(FCGR1A, HIST2H2BF) NA 0 NA 1.4 1 NA NA NA NA NA LTS-041 chr1 149760086 152195789 2435704 * c(LOC100132111, C2CD4D, MIR4257, TNFAIP8L2-SCNM1, FALEC, SF3B4, SEMA6C, MTMR11, MLLT11, TDRKH, CELF3, VPS45, THEM4, GABPB2, TCHHL1, RPTN, CIART, BNIPL, CTSK, CTSS, ECM1, ENSA, FCGR1A, POGZ, RPRD2, CA14, RIIAD1, THEM5, TMOD4, CERS2, HIST2H2AB, HIST2H2BC, LINGO4, LYSMD1, HRNR, ARNT, MCL1, HIST2H2BF, BOLA1, APH1A, PLEKHO1, OAZ3, PI4KB, MRPS21, ADAMTSL4, C1orf56, GOLPH3L, FAM63A, CDC42SE1, PSMB4, OTUD7B, NA NA NA NA NA NA NA NA NA LTS-041 PSMD4, CGN, ZNF687, PRUNE1, RFX5, RORC, S100A10, S100A11, MRPL9, HIST2H3D, MIR554, VPS72, TCHH, TUFT1, SCNM1, TNFAIP8L2, C1orf54, TARS2, SNX27, ANP32E, HIST2H2AC, HIST2H2BE, PIP5K1A, HORMAD1, ANXA9, SELENBP1, PRPF3, SETDB1, SV2A) 0.388681822271433 100 0.109920698687736 1.30026685200511 5664 0.365789866814718 4 2 2 -6.76045896544839 LTS-041 NA NA NA NA LTS-041 chr1 152195790 152274674 78885 * c(FLG, HRNR) NA 0 NA 0.815 1 NA NA NA NA NA LTS-041 chr1 152274675 152552239 277565 * c(FLG, LCE5A, LCE3E, FLG2, CRNN, CRCT1, LCE3D) 0.347482434998213 27 0.0647666422529218 1.00261170222712 409 0.385456549398481 3 2 1 -6.79049549837143 LTS-041 chr1 152552240 152552285 46 * LCE3D 0.291 1 NA 1.46 1 NA NA NA NA NA LTS-041 chr1 152552286 157069134 4516849 * c(MIR190B, C1orf68, MSTO2P, MIR4258, LOC100505666, PMF1-BGLAP, SCAMP3, ADAR, HAX1, C1orf61, PMVK, FAM189B, NES, JTB, SLC27A3, PMF1, GLMP, CHRNB2, PGLYRP3, CKS1B, CLK2, TDRD10, SHE, DCST2, TSACC, IQGAP3, NAXE, CRABP2, S100A16, CREB3L4, LELP1, DCST1, LRRC71, SPRR4, TTC24, EFNA1, EFNA3, EFNA4, LCE4A, KRTCAP2, CRTC2, FDPS, KIAA0907, SYT11, SMG5, SNAPIN, RUSC1, C1orf43, CHTOP, LCE2B, GBA, GBAP1, SLC39A1, NA NA NA NA NA NA NA NA NA LTS-041 RUSC1-AS1, LAMTOR2, HDGF, S100A7A, RXFP4, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, IL6R, ILF2, INSRR, IVL, PEAR1, KCNN3, C1orf189, VHLL, LMNA, LOR, MIR9-1, SMCP, MEF2D, ETV3L, KPRP, LCE6A, MTX1, MUC1, NPR1, NTRK1, ZBTB7B, RRNAD1, PKLR, DPM3, GON4L, GPATCH4, MSTO1, YY1AP1, PRCC, UBE2Q1, ASH1L, LENEP, SLC50A1, UBQLN4, RAB25, PGLYRP4, RHBG, ATP8B2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PBXIP1, S100A14, PRR9, GATAD2B, HCN3, RAB13, RIT1, HAPLN2, RPS27, S100A1, S100A2, S100A3, S100A4, S100A5, S100A6, S100A7, S100A8, S100A9, S100A12, S100A13, BGLAP, BCAN, SEMA4A, ASH1L-AS1, POU5F1P4, S100A7L2, SHC1, INTS3, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SSR2, SCARNA4, SNORA80E, MIR555, MIR92B, THBS3, TPM3, CCT3, MIR765, DAP3, MRPL24, PAQR6, TRIM46, FLAD1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ISG20L2, TMEM79, LCE3D, ADAM15, AQP10, SH2D2A, PYGO2, NUP210L, ARHGEF2, MEX3A, SLC25A44, ARHGEF11, UBAP2L, DENND4B) 0.259532386293934 160 0.130392934073474 1.02612135566112 10582 0.410853855213462 3 2 1 -7.1922440486253 LTS-041 NA NA NA NA LTS-041 chr1 157069135 157092270 23136 * ETV3L 0.125 1 NA 1.08377337059537 35 0.394472998085404 3 3 0 -5.76444231022727 LTS-041 chr1 157092271 157103519 11249 * c(ETV3, CYCSP52) NA 0 NA 1.01029361101636 82 0.183069910117322 3 NA NA -5.7660119220226 LTS-041 chr1 157103520 161012760 3909241 * c(TSTD1, CADM3-AS1, LINC01133, SLAMF6, FCRL1, FCRL3, OR10J5, OR10T2, OR6P1, OR10X1, OR10Z1, OR6K6, OR6N1, COPA, CRP, ITLN2, PYHIN1, ETV3, FCER1A, NCSTN, ACKR1, CFAP45, OR10J1, C1orf204, APCS, IFI16, OR10R2, FCRL6, KCNJ9, KCNJ10, OR10K2, OR10K1, OR6Y1, OR6K3, VSIG8, LY9, MNDA, OR10J3, SUMO1P3, ATP1A2, ATP1A4, NHLH1, DCAF8, F11R, CD244, DUSP23, KIRREL, ITLN1, SLAMF8, VANGL2, IGSF9, SLAMF7, CADM3, NA NA NA NA NA NA NA NA NA LTS-041 PEX19, LOC646268, SLAMF1, SPTA1, USF1, FCRL2, OR6N2, OR6K2, FCRL5, FCRL4, TAGLN2, CASQ1, PEA15, CD84, SLAMF9, CD1A, CD1B, CD1C, CD1D, CD1E, CD5L, PIGM, IGSF8, AIM2, CD48) 0.0917263726888059 88 0.104798582128252 0.861694317462125 5341 0.365970507683691 2 2 0 -7.24118285215742 LTS-041 NA NA NA NA LTS-041 chr1 161012761 161013121 361 * USF1 0.17 1 NA 0.833305171186524 7 0.297354926612882 2 2 0 -5.76441047301719 LTS-041 chr1 161013122 161565501 552380 * c(MIR5187, KLHDC9, FCER1G, FCGR2A, FCGR3A, ARHGAP30, CFAP126, USP21, HSPA6, APOA2, MPZ, NDUFS2, NIT1, UFC1, PFDN2, PPOX, SDHC, PCP4L1, USF1, NECTIN4, TOMM40L, B4GALT3, FCGR2C, DEDD, ADAMTS4, NR1I3) 0.168496340246488 30 0.113056816150823 0.858019582774173 1379 0.266549832916535 2 2 0 -6.75921143293886 LTS-041 chr1 161565502 161570506 5005 * FCGR2C NA 0 NA 0.447363765843115 40 0.200324593968684 1 NA NA -5.76957021540131 LTS-041 chr1 161570507 167022350 5451844 * c(MIR921, MIR3658, LOC100505795, MIR4654, GPA33, DUSP12, FMO9P, TADA1, SH2D1B, UHMK1, FCRLB, FAM78B, FCGR2B, FCGR3B, ALDH9A1, ATF6, OLFML2B, C1orf111, HSPA7, CCDC190, ILDR2, C1orf226, LOC400794, LMX1A, MGST3, LRRC52, LOC440700, DDR2, PBX1, HSD17B7, TMCO1, POGK, RGS4, RXRG, RPL31P11, UAP1, MIR556, UCK2, NUF2, FCRLA, RGS5, MAEL, FCGR2C, NOS1AP) 0.181313537821252 45 0.112247620388266 0.877709202378346 2793 0.271972398393988 2 2 0 -6.80841868560974 LTS-041 chr1 167022351 167022381 31 * GPA33 0.182 1 NA 0.552 1 NA NA NA NA NA LTS-041 chr1 167022382 167038325 15944 * GPA33 0.134 1 NA 0.522105293831899 43 0.180393782995761 1 1 0 -5.76785183160683 LTS-041 chr1 167038326 181031051 13992726 * c(MIR1295A, RASAL2-AS1, MIR3119-1, MIR3120, MIR3119-2, MIR3121, LOC100505918, LOC100506023, GAS5-AS1, LHX4-AS1, MIR4424, DNM3OS, MIR1295B, GPA33, STX6, SLC19A2, AXDND1, FAM163A, RC3H1, METTL11B, TDRD5, TOR1AIP2, DPT, FLJ23867, F5, KIFAP3, PRRC2C, FMO1, FMO2, FMO3, FMO4, GPR161, MPC2, DNM3, TOR1AIP1, TIPRL, SNORD81, SNORD79, SNORD80, SNORD47, SNORD44, ABL2, CACYBP, KLHL20, SLC9C2, LINC01142, NME7, MR1, NA NA NA NA NA NA NA NA NA LTS-041 ANKRD45, FASLG, SFT2D2, FMO6P, C1orf220, ASTN1, SERPINC1, MYOC, ATP1B1, SUCO, METTL13, PIGC, PRRX1, POU2F1, RALGPS2, DARS2, C1orf112, ADCY10, DCAF6, SCYL3, MIR488, QSOX1, KIAA1614, BRINP2, CCDC181, GAS5, PAPPA2, SNORD74, XCL1, TNN, MRPS14, SELE, SELL, SELP, TOR3A, RFWD2, SOAT1, SCARNA3, XCL2, SNORD75, SNORD76, SNORD77, SNORD78, MIR557, TNR, TOP1P1, TNFSF4, LOC730102, LOC730159, NPHS2, LINC00626, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MROH9, TEX35, ACBD6, ZBTB37, ANKRD36BP1, BLZF1, VAMP4, CREG1, SEC16B, LHX4, TNFSF18, MPZL1, ANGPTL1, TBX19, CENPL, CD247, XPR1, DUSP27, RCSD1, METTL18, GORAB, C1orf105, GPR52, RASAL2, PRDX6, KIAA0040, CEP350, RABGAP1L, FAM20B) 0.135437690427586 172 0.1088867899579 0.882030106010684 10631 0.313169371953559 2 2 0 -7.05700895894115 LTS-041 NA NA NA NA LTS-041 chr1 181031052 181057655 26604 * c(MR1, IER5) NA 0 NA 0.68 1 NA NA NA NA NA LTS-041 chr1 181057656 181059943 2288 * IER5 0.183156718455125 3 0.161658075373095 0.536922117767141 52 0.151030690946718 2 2 0 -6.74685974465762 LTS-041 chr1 181059944 181452662 392719 * c(GM140, IER5) NA 0 NA 1.334 1 NA NA NA NA NA LTS-041 chr1 181452663 196757392 15304730 * c(GS1-279B7.1, MIR1278, MIR548F1, MIR4735, RNU6-72P, ARPC5, PRG4, IVNS1ABP, CFHR4, CFHR3, OCLM, TSEN15, FAM129A, ZNF648, TEDDM1, DHX9, NMNAT2, COLGALT2, RGL1, GLUL, LOC284648, SMG7-AS1, CFH, CFHR1, BRINP3, KCNT2, RGSL1, LINC00272, LAMC1, LAMC2, APOBEC4, RGS21, LOC440704, NCF2, GLRX2, PDC, UCHL5, PLA2G4A, SWT1, C1orf27, PTGS2, RGS1, RGS2, RGS13, RGS16, RNASEL, RNF2, RGS18, TROVE2, TPR, CACNA1E, CDC73, NA NA NA NA NA NA NA NA NA LTS-041 EDEM3, NPL, C1orf21, SHCBP1L, TRMT1L, HMCN1, RGS8, B3GALT2, SMG7) 0.169807981592305 103 0.102698014404241 0.88974666951739 6056 0.265932165150497 2 2 0 -7.11339896127422 LTS-041 NA NA NA NA LTS-041 chr1 196757393 196763167 5775 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.733382781443002 62 0.248854305492676 2 NA NA -5.76549860052051 LTS-041 chr1 196763168 196794572 31405 * c(CFHR4, CFHR3, CFHR1) NA 0 NA 0.092 1 NA NA NA NA NA LTS-041 chr1 196794573 196857228 62656 * c(CFHR4, CFHR1) NA 0 NA 0.133025487508637 39 0.0947637377476365 0 NA NA -7.9590006535044 LTS-041 chr1 196857229 196857327 99 * CFHR4 NA 0 NA 0.201 1 NA NA NA NA NA LTS-041 chr1 196857328 196888051 30724 * CFHR4 NA 0 NA 0.213071560821165 71 0.19271796513171 0 NA NA -5.84589696413908 LTS-041 chr1 196888052 196918544 30493 * CFHR2 NA 0 NA 0.8 1 NA NA NA NA NA LTS-041 chr1 196918545 196920148 1604 * CFHR2 0.216 1 NA 0.827144447144978 7 0.111698573977341 2 2 0 -5.76443852174127 LTS-041 chr1 196920149 200342286 3422138 * c(MIR181A1HG, ATP6V1G3, NEK7, DENND1B, F13B, CRB1, NR5A2, ASPM, CFHR2, ZBTB41, C1orf53, MIR181B1, MIR181A1, LINC00862, LHX9, PTPRC, CFHR5) 0.0789133258768636 20 0.0750033508023405 0.812190058372704 1729 0.303019311156705 2 2 0 -7.88042072244877 LTS-041 chr1 200342287 201786455 1444169 * c(MIR1231, MIR5191, CSRP1, KIF21B, CAMSAP2, ZNF281, PHLDA3, TMEM9, GPR25, RPS10P7, LAD1, PKP1, LINC00862, C1orf106, ASCL5, TNNI1, TNNT2, CACNA1S, DDX59, NAV1, IGFN1, KIF14) 0.146471305815176 39 0.0921653226200463 0.910034211193837 2045 0.312650224625978 2 2 0 -6.92418213278777 LTS-041 chr1 201786456 201788873 2418 * NAV1 NA 0 NA 0.627 1 NA NA NA NA NA LTS-041 chr1 201788874 247752674 45963801 * c(AKT3, NA, LOC100130331, LINC00582, LGALS8-AS1, MIR1182, MIR1537, LINC00184, TSNAX-DISC1, MIR320B2, ZBED6, MIR3123, MIR4260, MIR3122, MIR3620, MIR3916, PCAT6, LINC01354, LINC01132, ZNF670-ZNF695, MIR4753, MIR4666A, MIR4677, MIR4671, MIR4427, MIR4742, MIR5008, LINC00538, LINC00210, BPNT1, TIMM17A, LRRN2, ZBTB18, CENPF, LEFTY1, SPHAR, CAPN9, KDM5B, SDCCAG8, IL24, CHI3L1, CHIT1, CHML, DUSP10, LYST, CHRM3, NLRP3, NA NA NA NA NA NA NA NA NA LTS-041 SLC26A9, COX20, SNAP47, CCSAP, LYPLAL1, DNAH14, OR2B11, ARL8A, SYT2, LINC00628, GOLT1A, WDR64, C1orf131, SPATA17, EDARADD, MRPL55, HIST3H2BB, TATDN3, ADORA1, CR1, CR1L, CR2, PARP1, C1orf74, BROX, SLC35F3, LOC148696, LOC148709, PTPRVP, B3GALNT2, MFSD4A, PM20D1, GCSAML, GCSAML-AS1, CNIH3, LINC01341, SHISA4, EXOC8, LOC149373, RNF187, SPATA45, FAM71A, CTSE, ADSS, CD55, SDE2, CNST, CCDC185, AGT, EIF2D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ELF3, PLD5, C1orf100, IBA57, ELK4, EPHX1, EPRS, ESRRG, FH, COG2, PLEKHA6, RBM34, NFASC, FBXO28, FMOD, SRGAP2, ABCB10, OPN3, SLC41A1, LOC255654, SYT14, C1orf101, DSTYK, RAB3GAP2, LMOD1, INTS7, GALNT2, AHCTF1, NSL1, OPTC, RPS6KC1, RNU5F-1, DIEXF, TAF5L, DISC2, DISC1, GNG4, LINC00303, LEMD1-AS1, LOC284578, LOC284581, NA, LIN9, FLVCR1, UBE2T, CNIH4, GUK1, PYCR2, NENF, IL19, H3F3A, HLX, HNRNPU, HSD11B1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ZNF678, PRSS38, LOC339529, LINC01139, RD3, IL10, IRF2BP2, IRF6, ITPKB, ARF1, MIA3, STUM, FAM89A, KCNH1, KCNK1, KCNK2, KISS1, TMEM81, CAPN8, COA6, C1orf229, LAMB3, LBR, LGALS8, C1orf140, FAM177B, NA, ZNF847P, MIR194-1, MIR205, MIR215, MIR29C, MARK1, CD46, MDM4, C1orf186, TRIM67, MAP1LC3C, H3F3AP4, OR2W5, MIR135B, MTR, MYBPH, MYOG, PPP1R12B, ATF3, NEK2, NID1, ATP2B4, NVL, G0S2, IL20, RRP15, DESI2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ADIPOR1, SCCPDH, TRIM17, KCTD3, CDK18, DTL, CYB5R1, ARID4B, PFKFB2, PIGR, PIK3C2B, PLXNA2, EGLN1, MAP10, LAX1, MARC2, SUSD4, KIF26B, GPATCH2, HEATR1, KLHDC8A, ETNK2, TMEM206, PPP2R5A, AVPR1B, YOD1, PRELP, BATF3, SLC30A10, IARS2, IPO9, HHAT, ENAH, NUP133, RCOR3, SERTAD4, PROX1, ERO1B, PSEN2, FMN2, SMYD2, COQ8A, ZNF695, GJC2, CAMK1G, DUSP5P1, SERTAD4-AS1, C1orf145, SIPA1L2, PTPN7, ZP4, PTPN14, ACTA1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RHOU, RAB4A, RABIF, RBBP5, KLHL12, LGR6, REN, RGS7, RNPEP, RYR2, MGAT4EP, TFB2M, MIR205HG, FLVCR1-AS1, LYPLAL1-AS1, GREM2, SNRPD2P2, MT1HL1, RPS7P5, NUCKS1, ACBD3, SMYD3, MARC1, ARV1, AIDA, JMJD4, SRGAP2C, SNRPE, SRP9, SNORA14B, SNORA36B, SNORA77, AURKAPS1, TARBP1, CNTN2, TBCE, SNORA16B, TGFB2, LEFTY2, TLR5, GPR137B, TP53BP2, TRAF5, C4BPA, C4BPB, TSNAX, TGFB2-AS1, FAM72A, LINC01136, LINC01347, USH2A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 WNT9A, ZNF124, SLC30A1, BTG2, C1orf116, C1orf35, TTC13, PGBD5, C1orf115, HHIPL2, VASH2, ZNF669, PCNX2, WDR26, TRAF3IP3, OR2G2, OR2C3, TRIM11, NUAK2, CAPN2, HIST3H3, RASSF5, MIXL1, SPRTN, FCAMR, OBSCN, NTPCR, EFCAB2, GNPAT, DYRK3, MLK4, LINC00260, CDC42BPA, LINC00467, ZNF496, C1orf198, PPP1R15B, PPFIA4, DISP1, SLC45A3, DEGS1, KMO, ACTN2, RAB29, WNT3A, NAV1, TAF1A, ANGEL2, EXO1, FCMR, MAPKAPK2, TMEM183A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 HIST3H2A, GPR37L1, LEMD1, ZNF670, GGPS1, CD34, SOX13, IKBKE, TMEM63A, TOMM20, URB2, CEP170, ZC3H11A, TMCC2, LPGAT1) 0.19243587880754 694 0.134044166578941 0.757094807241012 33930 0.255496593909394 2 2 0 -9.63727388822376 LTS-041 NA NA NA NA LTS-041 chr1 247752675 247768812 16138 * character(0) NA 0 NA 0.587 1 NA NA NA NA NA LTS-041 chr1 247768813 249213628 1444816 * c(MIR3124, OR2M5, OR2M3, OR2T12, OR14C36, OR2T34, OR2T10, OR2T4, OR2T11, OR2T6, TRIM58, OR1C1, OR2M4, OR2L2, OR2L1P, OR2T1, PGBD2, OR2L13, OR14A16, OR6F1, OR2W3, OR2T8, OR2T3, OR2T29, OR2M1P, OR11L1, OR2L8, OR2AK2, OR2L3, OR2M2, OR2T33, OR2M7, OR2G6, OR2T2, OR2T5, OR14I1, OR2T27, OR2T35, OR13G1, ZNF692, LYPD8, ZNF672, SH3BP5L, OR2L5, OR2G3) 0.213438663004277 31 0.120676908019025 0.680010744203925 1196 0.326190379352662 1 1 0 -7.0805093260594 LTS-041 chr1 249213629 249214134 506 * character(0) NA 0 NA 0.554449101550578 11 0.101000090008961 1 NA NA -5.76447894139626 LTS-041 chr2 38824 45895 7072 * FAM110C 0.123 1 NA 0.812860105684094 69 0.142663834715461 2 2 0 -5.76468950639521 LTS-041 chr2 45896 17699757 17653862 * c(SNORA80B, MIR4261, MIR3125, MIR4262, LINC01304, RNASEH1-AS1, LOC100506274, LOC100506474, MIR4429, LINC00570, PDIA6, MYCNOS, YWHAQ, CMPK2, MBOAT2, TMEM18, C2orf50, PQLC3, LINC01105, FAM84A, DDX1, E2F6, CYS1, MYT1L, LPIN1, NTSR2, ATP6V1C2, RNASEH1, SH3YL1, FAM150B, IAH1, FLJ33534, TRIB2, GRHL1, HPCAL1, LINC00298, LINC00299, ID2, LINC01115, C2orf48, KCNF1, RNF144A-AS1, LOC400940, LINC00487, MYCN, ODC1, TRAPPC12, NA NA NA NA NA NA NA NA NA LTS-041 NBAS, CPSF3, ACP1, SNTG2, ADI1, ALLC, KIDINS220, RPS7, RRM2, FAM110C, SOX11, ADAM17, TPO, TSSC1, LINC01249, RAD51AP2, MYT1L-AS1, PXDN, COLEC11, NOL10, FAM49A, KLF11, ASAP2, TAF1B, RSAD2, ITGB1BP1, ROCK2, GREB1, RNF144A) 0.206217294469712 105 0.132794408560959 0.761497634677249 6068 0.245414317774646 2 2 0 -8.16629516608548 LTS-041 NA NA NA NA LTS-041 chr2 17699758 17773232 73475 * c(RAD51AP2, VSNL1) NA 0 NA 0.513 1 NA NA NA NA NA LTS-041 chr2 17773233 20872214 3098982 * c(NT5C1B-RDH14, MIR4757, OSR1, TTC32, GDF7, PUM2, MSGN1, GEN1, KCNS3, RHOB, LINC00954, MATN3, WDR35, RDH14, SDC1, HS1BP3, VSNL1, SMC6, NT5C1B, LAPTM4A) 0.364274959554655 37 0.133642586179858 0.659349017812357 1542 0.18667624577739 1 1 0 -7.72300141484659 LTS-041 chr2 20872215 26257670 5385456 * c(MIR1301, RAB10, ADCY3, KLHL29, UBXN2A, DNMT3A, DTNB, FKBP1B, EFR3B, APOB, PFN4, FAM228B, KIF3C, MFSD2B, PTRHD1, ITSN2, DNAJC27, SF3B6, POMC, ATAD2B, ASXL2, LDAH, LOC645949, FAM228A, DNAJC27-AS1, CENPO, WDCP, NCOA1, TP53I3) 0.226952727527049 32 0.161434618619148 0.617006470466017 3205 0.175263898672349 1 1 0 -7.13018868211618 LTS-041 chr2 26257671 26321481 63811 * RAB10 NA 0 NA 1.069 1 NA NA NA NA NA LTS-041 chr2 26321482 26667785 346304 * c(RAB10, GAREM2, ADGRF3, HADHA, HADHB, SELENOI, DRC1) 0.188615664743007 8 0.133408074289806 0.93006270661439 766 0.260580815828492 2 2 0 -6.7626068747519 LTS-041 chr2 26667786 27245082 577297 * c(CENPA, CIB4, MAPRE3, C2orf70, KCNK3, SLC35F6, DPYSL5, DRC1, OTOF) 0.0834238048230356 11 0.0641887840670004 0.63973060533061 751 0.338848118714192 3 3 0 -8.05028009913209 LTS-041 chr2 27245083 30482320 3237238 * c(OST4, BRE-AS1, MIR4263, GTF3C2-AS1, LOC100505716, PREB, CGREF1, EMILIN1, GPN1, ZNF513, TCF23, PLB1, FAM179A, KRTCAP3, MAPRE3, SLC4A1AP, WDR43, FOSL2, ALK, SPDYA, FTH1P3, IFT172, GCKR, SNORD53, DNAJC5G, GTF3C2, NRBP1, PRR30, KHK, C2orf71, MPV17, ATRAID, YPEL5, TMEM214, PPM1G, PPP1CB, TRMT61B, TRIM54, AGBL5, RBKS, FNDC4, SNORD92, UCN, SLC30A3, CAD, CCDC121, CLIP4, LBH, C2orf16, ZNF512, ABHD1, SLC5A6, NA NA NA NA NA NA NA NA NA LTS-041 EIF2B4, MRPL33, BRE, SNX17, SUPT7L) 0.13551969787013 73 0.114010048223349 0.918912718699211 4763 0.255008273945288 2 2 0 -7.08761842984175 LTS-041 NA NA NA NA LTS-041 chr2 30482321 32288596 1806276 * c(LCLAT1, EHD3, CAPN14, MEMO1, SRD5A2, XDH, GALNT14, LBH, DPY30, CAPN13) 0.0783617555180479 17 0.0579923296145072 1.10889992021612 930 0.405245737102901 4 4 0 -7.28435420552163 LTS-041 chr2 32288597 32288679 83 * character(0) 0.46 1 NA 0.261 1 NA NA NA NA NA LTS-041 chr2 32288680 37430153 5141474 * c(LOC100271832, LOC100288911, CEBPZOS, MIR4765, CEBPZ, MYADML, GPATCH11, RASGRP3, FAM98A, LINC00486, SULT6B1, LTBP1, CRIM1, VIT, HEATR5B, TTC27, SLC30A6, EIF2AK2, BIRC6, NLRC4, SPAST, STRN, MIR558, YIPF4, FEZ2) 0.160471323810375 38 0.128856191964846 0.773042523394004 2717 0.218172657458635 2 2 0 -7.22037973004123 LTS-041 chr2 37430154 37438061 7908 * c(CEBPZOS, CEBPZ) NA 0 NA 0.634 1 NA NA NA NA NA LTS-041 chr2 37438062 52929801 15491740 * c(SLC8A1-AS1, LINC01126, LINC01119, ARHGEF33, MIR548AD, LRPPRC, RMDN2-AS1, CEBPZ, CDC42EP3, SIX2, GTF2A1L, STON1, PPP1R21, PLEKHH2, GALM, TMEM178A, RMDN2, CYP1B1, OXER1, KCNG3, EPAS1, RHOQ, HAAO, PRKD3, FSHR, QPCT, EML4, C2orf61, CYP1B1-AS1, STON1-GTF2A1L, MSH6, FOXN2, CDKL4, LOC375196, LOC388942, TMEM247, LINC01118, LHCGR, C2orf91, LINC01121, EPCAM, MSH2, DYNC2LI1, PIGF, PPM1B, SRBD1, NDUFAF7, PRKCE, NA NA NA NA NA NA NA NA NA LTS-041 KCNK12, TTC7A, MTA3, THADA, ATL2, ABCG5, ABCG8, SRSF7, SIX3, SLC3A1, SLC8A1, SOS1, ZFP36L2, MIR559, LOC728730, C1GALT1C1L, MORN2, CAMKMT, GEMIN6, FBXO11, CALM2, THUMPD2, MAP4K3, MCFD2, ATP6V1E2, DHX57, PKDCC, COX7A2L, HNRNPLL, NRXN1, CRIPT, PREPL, SOCS5) 0.249762620466452 156 0.155946428841192 0.625442780452245 7444 0.218389775955239 1 1 0 -7.62776318926132 LTS-041 NA NA NA NA LTS-041 chr2 53831898 55766013 1934116 * c(MIR3682, GPR75, CFAP36, C2orf73, CLHC1, PSME4, ERLEC1, PRORSD1P, TSPYL6, EML6, MTIF2, CHAC2, ASB3, CCDC88A, RPL23AP32, RTN4, RPS27A, SPTBN1, ACYP2) 0.110295266485756 24 0.090887641656042 0.929346095180405 1773 0.257611971471527 3 3 0 -7.30787477752212 LTS-041 chr2 55766014 55766138 125 * CFAP36 NA 0 NA 0.567 1 NA NA NA NA NA LTS-041 chr2 55766139 58275666 2509528 * c(MIR216B, CFAP36, CCDC85A, EFEMP1, MIR216A, MIR217, PPP4R3B, VRK2, PNPT1) 0.246416505491857 8 0.113063825211376 0.633275897760212 539 0.179529264616869 1 1 0 -7.09137089238252 LTS-041 chr2 58275667 58275680 14 * VRK2 NA 0 NA 0.807 1 NA NA NA NA NA LTS-041 chr2 58275681 65659330 7383650 * c(SNORA70B, LOC100132215, DBIL5P2, MIR4434, MIR4432, MIR5192, ACTR2, CCT4, B3GNT2, AHSA2, COMMD1, PUS10, LINC00309, TMEM17, SPRED2, CEP68, EHBP1, LGALSL, LOC339803, C2orf74, LOC339807, LINC01122, LINC01185, LOC400958, MDH1, OTX1, WDPCP, VPS54, PEX13, BCL11A, AFTPH, FANCL, PELI1, RAB1A, REL, PAPOLG, SLC1A4, UGP2, VRK2, XPO1, FAM161A, KIAA1841, USP34, SERTAD2) 0.173610227823493 47 0.136041206958588 0.745827419168838 3373 0.239607023066406 2 2 0 -7.72502450811578 LTS-041 chr2 66585300 67631175 1045876 * c(MIR4778, MEIS1, ETAA1, LOC644838, MEIS1-AS3) 0.154 1 NA 1.17748775168305 183 0.312221110718065 3 3 0 -5.79061518255019 LTS-041 chr2 67631176 79423020 11791845 * c(SNORA36C, LOC100133985, SNAR-H, DCTN1-AS1, MIR3126, BOLA3-AS1, INO80B-WBP1, MIR5000, MPHOSPH10, SMYD5, C1D, SEMA4F, CCT7, STAMBP, MTHFD2, PROKR1, SNRNP27, TEX261, WDR92, MRPL53, ADD2, REG3G, M1AP, CTNNA2, FBXO41, ASPRV1, LBX2-AS1, DCTN1, CLEC4F, DQX1, DGUOK, DOK1, EGR4, ALMS1P1, TET3, GKN2, APLF, EMX1, AAK1, EXOC6B, WBP1, VAX2, CNRIP1, RAB11FIP5, GFPT1, NFU1, BMP10, ZNF638, HTRA2, ANXA4, HK2, TLX2, NA NA NA NA NA NA NA NA NA LTS-041 FIGLA, NOTO, C2orf78, BOLA3, C2orf81, PCBP1-AS1, PAIP2B, MXD1, CD207, REG3A, PCBP1, TPRKB, PCYOX1, ATP6V1B1, PLEK, ETAA1, C2orf42, AUP1, MOB1A, PPP3R1, FBXO48, NAGK, GKN1, CYP26B1, POLE4, PNO1, SLC4A5, REG1A, REG1B, REG1CP, RTKN, GMCL1, TTC31, SNRPG, SPR, TACR1, GCFC2, TGFA, TIA1, ACTG2, ALMS1, MOGS, OR7E91P, ANKRD53, LRRTM4, DYSF, INO80B, WDR54, EVA1A, ANTXR1, PRADC1, DUSP11, MCEE, LOXL3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PCGF1, CCDC142, FAM136A, LBX2, NAT8, SFXN5, MRPL19, ARHGAP25) 0.164877172581147 134 0.129579198611609 0.733151338926907 8836 0.29180288722151 2 2 0 -8.05642449632395 LTS-041 NA NA NA NA LTS-041 chr2 79423021 79423030 10 * CTNNA2 0 1 NA 2.662 1 NA NA NA NA NA LTS-041 chr2 79423031 80801346 1378316 * c(MIR4264, CTNNA2, LRRTM1) 0.0703883650561699 2 0.037476659402887 0.865288557185299 156 0.261349438553554 3 3 0 -9.18555682794198 LTS-041 chr2 80801347 84518438 3717092 * c(CTNNA2, DHFRP3, FUNDC2P2) 0.254 1 NA 0.827328978693105 67 0.258401102562504 2 2 0 -5.77640167053465 LTS-041 chr2 84518439 91809286 7290848 * c(ANAPC1P1, RNF103-CHMP3, MIR4779, MIR4436A, MIR4780, PARTICL, GNLY, TGOLN2, USP39, VAMP5, IMMT, CYTOR, TRABD2A, TMEM150A, SMYD1, DNAH6, TEX37, FABP1, RPIA, POLR1A, GGCX, SH2D6, LOC284950, LOC285074, FOXI3, FUNDC2P2, C2orf68, MAT2A, RNF181, KRCC1, MRPL35, CHMP3, RETSAT, PTCD3, THNSL2, KDM3A, KCMF1, SFTPB, ANKRD36BP2, RMND5A, REEP1, LOC654342, SNORD94, RNF103, CAPG, TCF7L1, ELMOD3, ATOH8, VAMP8, SUCLG1, NA NA NA NA NA NA NA NA NA LTS-041 ST3GAL5, LOC90784, TMSB10, CD8A, CD8B, EIF2AK3) 0.293039282493742 125 0.114186159830227 0.885104245167006 4231 0.372299562300294 2 1 1 -7.2361919045489 LTS-041 NA NA NA NA LTS-041 chr2 91809287 91809324 38 * LOC654342 0.313 1 NA 2.622 1 NA NA NA NA NA LTS-041 chr2 91809325 91944161 134837 * LOC654342 0.238103115552351 8 0.132858410132205 1.40289404072929 68 1.22109417570988 6 5 1 -6.74403965807749 LTS-041 chr2 91944162 91955470 11309 * character(0) NA 0 NA 1.4574679834313 7 0.296551127849097 4 NA NA -5.76473468293438 LTS-041 chr2 95537183 95537501 319 * c(TEKT4, LOC442028) 0.3 1 NA 1.95396925367306 7 0.918440837195609 6 6 0 -5.76441039571743 LTS-041 chr2 95537502 100893343 5355842 * c(MIR3127, ACTR1B, TXNDC9, ARID5A, MGAT4A, CNGA3, LYG1, MITD1, TRIM43, COX5B, TEKT4, C2orf15, PROM2, GPAT2, ITPRIPL1, ADRA2B, FAHD2B, LONRF2, DUSP2, VWA3B, ANKRD23, SNRNP200, NCAPH, TMEM131, LYG2, UNC50, CNNM4, CNNM3, STARD7-AS1, KCNIP3, KIAA1211L, INPP4A, ANKRD36, AFF3, MAL, ASTL, LOC442028, COA5, FAHD2A, ANKRD39, FAM178B, MRPL30, REV1, LIPT1, SEMA4C, TMEM127, KANSL3, STARD7, ANKRD36B, MRPS5, TRIM43B, NA NA NA NA NA NA NA NA NA LTS-041 LINC01125, FAHD2CP, ZAP70, ZNF2, TSGA10, LMAN2L, ZNF514, FER1L5, NEURL3, CIAO1, EIF5B) 0.339589054721956 71 0.127812576565729 1.62102598234558 5320 0.445803507233083 5 3 2 -6.80755896028151 LTS-041 NA NA NA NA LTS-041 chr2 100893344 100893348 5 * LONRF2 NA 0 NA 1.143 1 NA NA NA NA NA LTS-041 chr2 100893349 104996073 4102725 * c(LOC100287010, MIR4772, MIR5696, TBC1D8, NMS, TMEM182, LONRF2, CREG2, RNF149, IL1R1, SLC9A4, NPAS2, CNOT11, RPL31, SLC9A2, SNORD89, RFX8, IL1R2, PDCL3, MFSD9, IL18RAP, IL1RL2, IL18R1, IL1RL1, MAP4K4, CHST10) 0.33171717250163 31 0.145869576448735 1.47652376895906 2310 0.429195111240534 4 3 1 -6.83009248636688 LTS-041 chr2 104996074 105471983 475910 * c(LOC100287010, LINC01158, LINC01102, LINC01114, POU3F3) NA 0 NA 1.352 1 NA NA NA NA NA LTS-041 chr2 105471984 113290313 7818330 * c(BCL2L11, SH3RF3-AS1, MIR4265, MIR4267, MIR4266, LOC100507334, MERTK, EDAR, GPR45, FBLN7, TTL, LINC01106, SEPT10, SULT1C2P1, CCDC138, LINC00116, FHL2, SULT1C4, LOC285000, PLGLA, RGPD4, SH3RF3, ZC3H6, LIMS1, SULT1C3, NPHP1, MIR4435-2HG, POU3F3, ACOXL, RANBP2, SLC5A7, ANAPC1, MRPS9, SOWAHC, RGPD3, SULT1C2, BUB1, RGPD8, RGPD4-AS1, MALL, C2orf49, UXS1, NCK2, C2orf40, ZC3H8, ST6GAL2, TMEM87B, TGFBRAP1, GCC2 NA NA NA NA NA NA NA NA NA LTS-041 ) 0.378801087575934 91 0.118410546959541 1.34848591342741 3752 0.380324381500413 4 2 2 -6.74729355489365 LTS-041 NA NA NA NA LTS-041 chr2 113290314 113299483 9170 * character(0) NA 0 NA 0.735 1 NA NA NA NA NA LTS-041 chr2 113299484 118867569 5568086 * c(LOC100499194, MIR4782, ACTR3, RABL2A, RPL23AP7, CKAP2L, CBWD2, FOXD4L1, PSD4, IL36RN, IL36B, IL37, IL36A, IL1A, IL1B, IL1RN, WASH2P, DPP10-AS1, FLJ42351, LINC01191, INSIG2, CCDC93, IL36G, DPP10, FAM138B, PAX8-AS1, SLC20A1, PAX8, SLC35F5, POLR1B, CHCHD5, IL1F10, DDX11L2, DDX18) 0.289766137401673 59 0.115131127437231 1.20229206800898 2181 0.571560797208989 4 3 1 -6.90855615836547 LTS-041 chr2 118867570 121104099 2236530 * c(C2orf76, TMEM37, DBI, C1QL2, CFAP221, EN1, INHBB, INSIG2, STEAP3, EPB41L5, PTPN4, RALB, SCTR, TMEM185B, TMEM177, MARCO) 0.250018842887015 12 0.210871567978754 0.895123492988115 1273 0.312631903842431 2 2 0 -6.82755651397891 LTS-041 chr2 121104100 137852726 16748627 * c(CCNT2-AS1, RAB6C-AS1, CYP4F30P, RNU4ATAC, FAR2P2, MIR663B, MIR3679, LOC100507600, MIR4783, MIR4784, MAP3K2, TUBA3E, TUBA3D, LYPD1, CNTNAP5, ACMSD, FAM168B, LOC150776, WTH3DI, DARS, AMER3, ERCC3, RAB3GAP1, UBXN4, CLASP1, R3HDM1, NIFK-AS1, PTPN18, GLI2, BIN1, GPR17, MED15P9, GPR39, C2orf27A, TFCP2L1, GYPC, CYP27C1, NCKAP5, GPR148, INHBB, LOC389033, LINC01120, LCT, NOC2LP2, MIR128-1, C2orf27B, MCM6, MGAT5, NA NA NA NA NA NA NA NA NA LTS-041 FAR2P1, LOC440910, POTEE, MYO7B, ARHGEF4, POLR2D, PLEKHB2, WDR33, ANKRD30BL, SMPD4, IWS1, LIMS2, CFC1, PROC, UGGT1, POTEI, CFC1B, POTEJ, MZT2A, TSN, POTEF, CXCR4, SAP130, MZT2B, MAP3K19, THSD7B, TMEM163, AMMECR1L, ZRANB3, RAB6C, CCDC115, NIFK, SFT2D3, LINC01101, CCNT2, CCDC74A, CCDC74B, IMP4, HS6ST1) 0.345284890091473 149 0.133625275042701 1.10014143938046 6919 0.432360525991377 3 2 1 -6.7478294756646 LTS-041 NA NA NA NA LTS-041 chr2 137852727 137872655 19929 * THSD7B NA 0 NA 1.709 1 NA NA NA NA NA LTS-041 chr2 137872656 142889274 5016619 * c(NXPH2, HNMT, SPOPL, LRP1B, YY1P2, THSD7B) 0.362514725824583 24 0.0555762304524546 1.37037741044495 996 0.511593301067518 4 2 2 -6.91114128825829 LTS-041 chr2 143642881 148602435 4959555 * c(ZEB2-AS1, TEX41, ARHGAP15, PABPC1P2, GTDC1, KYNU, ACVR2A, ZEB2) 0.329946964306122 7 0.147593392547937 1.15109832512208 465 0.367987760477611 3 2 1 -6.80519193822917 LTS-041 chr2 148602436 158114268 9511833 * c(LOC100144595, MIR4773-1, MIR4773-2, STAM2, FMNL2, GALNT13, LYPD6, LYPD6B, ARL6IP6, EPC2, ARL5A, MMADHC, GPD2, RBM43, KCNJ3, KIF5C, RND3, NEB, NR4A2, ORC4, RIF1, PRPF40A, MBD5, RPRM, TNFAIP6, CACNB4, NMI, ACVR2A) 0.328397289368937 53 0.148330007083703 1.32302482586555 3814 0.362459169955746 4 3 1 -6.78939766210424 LTS-041 chr2 158114269 158485565 371297 * c(GALNT5, ACVR1C, ERMN, CYTIP) 0.366164154404597 3 0.267629096574594 1.11966723685366 402 0.308604402099715 3 2 1 -6.73346375895113 LTS-041 chr2 158485566 158592994 107429 * ACVR1 NA 0 NA 1.399 1 NA NA NA NA NA LTS-041 chr2 158592995 161350351 2757357 * c(LY75-CD302, MIR4785, CCDC148, WDSUB1, UPP2, PLA2R1, BAZ2B, ITGB6, LY75, CCDC148-AS1, RBMS1, MARCH7, PKP4, TANC1, ACVR1, DAPL1, CD302) 0.352210600948962 40 0.152007759586012 1.3475419865234 1793 0.351123517232911 4 2 2 -6.77889125397646 LTS-041 chr2 161350352 161797411 447060 * character(0) NA 0 NA 0.983 1 NA NA NA NA NA LTS-041 chr2 161797412 165539171 3741760 * c(TANK, PSMD14, TBR1, DPP4, FAP, GCA, GCG, AHCTF1P1, GRB14, FIGN, SLC4A10, IFIH1, KCNH7) 0.394703796420008 6 0.083935689667745 1.20925230507003 1429 0.277291646515616 3 2 1 -7.03433422620758 LTS-041 chr2 165539172 165539174 3 * character(0) NA 0 NA 1.668 1 NA NA NA NA NA LTS-041 chr2 165539175 165544333 5159 * c(SNORA70F, COBLL1) 0 1 NA 1.88921348131037 71 0.812716355221344 6 6 0 -5.76441013499565 LTS-041 chr2 165544334 166799852 1255519 * c(LOC100506124, TTC21B-AS1, SLC38A11, COBLL1, GALNT3, SCN2A, SCN3A, TTC21B, CSRNP3) 0.333845768104365 26 0.121518469631322 1.32171781507052 1193 0.38665019494697 4 3 1 -6.76757162092353 LTS-041 chr2 166799853 166802055 2203 * c(TTC21B-AS1, TTC21B) NA 0 NA 1.21 1 NA NA NA NA NA LTS-041 chr2 166802056 170382714 3580659 * c(TTC21B-AS1, MIR4774, CERS6-AS1, DHRS9, KLHL41, NOSTRIN, XIRP2, BBS5, CERS6, STK39, LRP2, SPC25, G6PC2, SCN1A, SCN7A, SCN9A, TTC21B, ABCB11, B3GALT1) 0.362834933977166 58 0.111075215819138 1.22636376717975 2293 0.475365701181728 3 2 1 -6.83570487265835 LTS-041 chr2 170382715 170394487 11773 * c(KLHL41, FASTKD1) 0.235 1 NA 1.27075010819957 37 0.424758170025019 4 4 0 -5.76461438761362 LTS-041 chr2 170394488 174231929 3837442 * c(NA, PHOSPHO2-KLHL23, RAPGEF4, CCDC173, UBR3, MYO3B, KLHL23, DLX1, DLX2, DYNC1I2, METAP1D, GAD1, GORASP2, METTL5, MLK7-AS1, ITGA6, SP5, LINC01124, PHOSPHO2, PDK1, ZAK, SSB, FASTKD1, METTL8, CYBRD1, DCAF17, CDCA7, HAT1, SLC25A12, RAPGEF4-AS1, PPIG, TLK1) 0.289967634758857 64 0.127858311297534 1.20242300038767 3231 0.320204842885911 4 3 1 -7.08818913846037 LTS-041 chr2 174231930 174232028 99 * CDCA7 NA 0 NA 1.015 1 NA NA NA NA NA LTS-041 chr2 174232029 179238646 5006618 * c(MIR933, LOC100130691, SP9, MIR1246, MIR3128, HOXD-AS2, MTX2, CHN1, CHRNA1, OSBPL6, RBM45, ATF2, TTC30B, GPR155, HNRNPA3, LINC01305, OLA1, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13, EVX2, LINC01116, HAGLR, MIR10B, NFE2L2, PDE11A, ATP5G3, SP3, WIPF1, SCRN3, LNPK, CDCA7, AGPS, TTC30A, CIR1) 0.265680019973209 20 0.110494046041071 0.924117982629036 2729 0.290763327865078 2 2 0 -7.27653275161235 LTS-041 chr2 179238647 182541589 3302943 * c(MIR548N, MIR1258, TTN-AS1, MIR4437, UBE2E3, OSBPL6, ZNF385B, CCDC141, ITGA4, CERKL, NEUROD1, DFNB59, FKBP7, CWC22, PLEKHA3, TTN, PRKRA, SESTD1) 0.282872625017264 34 0.118831720169154 0.838327867838706 4440 0.210040166737784 2 2 0 -7.06973853999809 LTS-041 chr2 182541590 190728981 8187392 * c(MIR1245A, MIR3129, MIR3606, MIR1245B, OSGEPL1-AS1, CALCRL, NCKAP1, DIRC1, COL3A1, COL5A2, NUP35, DUSP19, ANKAR, ZSWIM2, PPP1R1C, FAM171B, FRZB, SLC40A1, ITGAV, CERKL, FSIP2, NEUROD1, PDE1A, GULP1, PMS1, DNAJC10, ASNSD1, ZC3H15, OSGEPL1, SSFA2, MIR561, TFPI, WDR75, ZNF804A, ORMDL1) 0.345390415833009 55 0.107428350564693 0.968491088362588 3723 0.444672725380355 3 2 1 -7.15559667068481 LTS-041 chr2 190728982 190732521 3540 * PMS1 NA 0 NA 0.865 1 NA NA NA NA NA LTS-041 chr2 190732522 203765955 13033434 * c(SNORD11B, LOC100130452, NEMP2, LOC100507140, HSPE1-MOB4, KIAA2012, CLK1, TYW5, ICA1L, RFTN2, KCTD18, ALS2CR12, SATB2-AS1, FAM117B, SGO2, ALS2CR11, C2orf69, SATB2, SF3B1, TMEFF2, MOB4, SPATS2L, HIBCH, MSTN, GLS, CCDC150, FAM126B, AOX1, HSPD1, HSPE1, AOX2P, FTCDNL1, INPP1, C2orf66, MYO1B, NAB1, NDUFB3, ORC2, NOP58, PLCL1, PMS1, PPIL3, MFSD6, STRADB, WDR12, DNAH7, SLC39A10, HECW2, ALS2, MPP4, NIF3L1, NA NA NA NA NA NA NA NA NA LTS-041 PCGEM1, NABP1, CDK15, TMEM237, CFLAR-AS1, BMPR2, TRAK2, BOLL, STAT1, STAT4, SNORD11, SNORD70, SUMO1, C2orf47, PGAP1, COQ10B, FZD7, CASP8, C2orf88, CASP10, SDPR, CFLAR, ANKRD44, STK17B, MARS2, GTF3C3, BZW1) 0.320247144702052 89 0.140336590129272 0.876692970300075 7872 0.261213564080609 2 1 1 -7.06044798506064 LTS-041 NA NA NA NA LTS-041 chr2 203765956 203772593 6638 * WDR12 NA 0 NA 1.108 1 NA NA NA NA NA LTS-041 chr2 203772594 224461948 20689355 * c(LOC100129175, LOC100130451, MIR548F2, GCSHP3, MIR3131, MIR4268, MIR3130-1, MIR3130-2, MIR2355, MIR3132, LOC100507443, IDH1-AS1, FARSB, ABCB6, MIR4776-1, MIR4775, MIR4776-2, VWC2L-IT1, ARPC2, ABI2, SPEG, LANCL1, STK11IP, MOGAT1, PARD3B, SGPP2, TMEM198, ZFAND2B, CPO, MDH1B, CPS1, CREB1, AAMP, CRYBA2, CRYGA, CRYGB, CRYGC, CRYGD, CTLA4, PKI55, KANSL1L, METTL21A, CCNYL1, CCDC140, SLC23A3, LINC00608, GPBAR1, NA NA NA NA NA NA NA NA NA LTS-041 CYP27A1, DES, EEF1B2, PIKFYVE, LOC200726, EPHA4, ERBB4, ACSL3, IKZF2, FASTKD2, FN1, OBSL1, DNPEP, KCNE4, CFAP65, PNKD, ABCA12, SNORD51, CNPPD1, STK36, GPR1, UNC80, RUFY4, CPS1-IT1, ICOS, GMPPA, ACADL, DNAJB2, IDH1, IGFBP2, IGFBP5, IHH, CXCR1, CXCR2, CXCR2P1, INHA, CATIP, PLEKHM3, C2orf80, RESP18, DYTN, VWC2L, MIR153-1, MIR26B, MAP2, MYL1, ATIC, NDUFS1, MIR375, SMARCAL1, PAX3, PRKAG3, FEV, INO80D, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ANKZF1, ASIC4, MREG, WDR12, PECR, CYP20A1, PTH2R, MARCH4, ZDBF2, USP37, PTPRN, BARD1, CTDSP1, RPE, RPL37A, BCS1L, SNORA41, TMBIM1, RNF25, LINC00607, RAPH1, NBEAL1, SLC4A3, SLC11A1, TNP1, TNS1, TUBA4A, DIRC3, VIL1, WNT6, XRCC5, ZNF142, FZD5, SCG2, ATG9A, FAM134A, GLB1L, SPAG16, CHPF, CARF, NHEJ1, TUBA4B, WNT10A, PLCD4, STK16, KLF7, ADAM23, NRP2, CDK5R2, CNOT9, TMEM169, CD28, TTLL4) 0.3086520097647 265 0.117514554771698 0.92693018565996 14300 0.289167608698451 2 1 1 -8.13082068141736 LTS-041 NA NA NA NA LTS-041 chr2 224461949 234449404 9987456 * c(MIR1471, MIR4439, MIR4777, MIR5702, MIR5703, NMUR1, SP140, CHRND, CHRNG, COL4A3, COL4A4, DIS3L2, AP1S3, SPATA3, FBXO36, SLC16A14, LOC151475, LINC00471, LOC151484, DAW1, C2orf57, TIGD1, ALPI, ALPP, ALPPL2, C2orf72, NGEF, SNORD82, GIGYF2, AGFG1, HTR2B, SP110, ECEL1P2, SPATA3-AS1, INPP5D, IRS1, KCNJ13, C2orf82, NCL, NEU2, NPPC, PDE6D, CAB39, SERPINE2, PID1, ATG16L1, USP40, DOCK10, C2orf83, MFF, PSMD1, NA NA NA NA NA NA NA NA NA LTS-041 PTMA, WDFY1, NYAP2, SNORD20, SAG, CCL20, LOC646736, PRSS56, COPS7B, MRPL44, SNORA75, LOC654841, SP100, SCARNA6, SCARNA5, SCG2, FAM124B, TM4SF20, ARMC9, EFHD1, SPHKAP, SLC19A3, ITM2C, RHBDD1, CUL3, DGKD, DNER, GPR55, B3GNT7, TRIP12, SP140L, ECEL1, EIF4E2) 0.303739925671403 160 0.123679922029437 0.887986969022907 7191 0.28825866145883 2 1 1 -7.21927300667968 LTS-041 NA NA NA NA LTS-041 chr2 234449405 234450922 1518 * USP40 NA 0 NA 0.677 1 NA NA NA NA NA LTS-041 chr2 234450923 234978746 527824 * c(LOC100286922, MSL3P1, DNAJB3, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, USP40, HJURP, SPP2, TRPM8) 0.259577064173308 16 0.126861456584207 0.816990715048078 823 0.263312181678339 2 2 0 -6.90550754071226 LTS-041 chr2 234978747 235401660 422914 * SPP2 NA 0 NA 1.361 1 NA NA NA NA NA LTS-041 chr2 235401661 243037004 7635344 * c(PP14571, BOK-AS1, MIR4269, UBE2F-SCLY, MIR2467, MIR4440, MIR4786, MIR4441, ARL4C, RAMP1, STK25, COPS8, CAPN10, AGAP1, TWIST2, COL6A3, NEU4, MTERF4, UBE2F, OTOS, COPS9, OR6B3, LOC150935, LINC01107, LOC151174, DTYMK, AGXT, LOC200772, PASK, ATG4B, SH3BP4, SNED1, TRAF3IP1, GBX2, GPC1, RTP5, DUSP28, GPR35, HDLBP, ESPNL, RBM44, AQP12A, KLHL30, OR6B2, ASB18, FLJ43879, MIR149, NDUFA10, SEPT2, ANO7, PRLH, NA NA NA NA NA NA NA NA NA LTS-041 THAP4, ANKMY1, PDCD1, SCLY, ASB1, KIF1A, PPP1R7, HES6, ACKR3, RNPEPL1, GAL3ST2, RAB17, LOC643387, PRR21, AQP12B, BOK, D2HGDH, LOC728323, MLPH, IQCA1, C2orf54, ILKAP, ING5, MGC16025, PER2, LRRFIP1, HDAC4, FARP2) 0.292519240840831 177 0.123913002041703 0.92209847666925 6989 0.339308801153285 2 1 1 -7.40816236350676 LTS-041 NA NA NA NA LTS-041 chr2 243037005 243037218 214 * LOC728323 NA 0 NA 1.00466798456785 7 0.395689452547251 3 NA NA -5.76441746777182 LTS-041 chr3 239351 361508 122158 * CHL1 0.308 1 NA 0.653689804046999 9 0.115795557389354 1 1 0 -5.83773069229278 LTS-041 chr3 361509 9101987 8740479 * c(EGOT, LMCD1-AS1, BHLHE40-AS1, MIR4790, CNTN4-AS2, CHL1, CNTN4, CNTN6, SUMF1, GRM7, LINC00312, LMCD1, IL5RA, ITPR1, OXTR, SSUH2, TRNT1, CRBN, ARL8B, RAD18, LRRN1, SETMAR, BHLHE40, CAV3, EDEM1, SRGAP3) 0.34171790269287 80 0.11904866572174 0.622455983685633 2606 0.195181149508443 1 1 0 -7.48283555943125 LTS-041 chr3 9101988 13660549 4558562 * c(MIR885, GHRLOS, MKRN2OS, SRGAP3-AS3, ARPC4-TTLL3, PRRT3-AS1, SLC6A1-AS1, ARPC4, TADA3, ATG7, FANCD2OS, TAMM41, IL17RE, CPNE9, CIDECP, FANCD2, FBLN2, CAND2, NUP210, MKRN2, THUMPD3, TTLL3, RPUSD3, PRRT3, LINC00606, HRH1, IRAK2, LHFPL4, LOC401052, THUMPD3-AS1, ATP2B2, OGG1, GHRL, PPARG, SETD5, TMEM40, EMC3, BRK1, RAF1, RPL32, CIDEC, SEC13, MTMR14, SLC6A1, SLC6A11, SYN2, TIMP4, VHL, BRPF1, CRELD1, HDAC11, NA NA NA NA NA NA NA NA NA LTS-041 TSEN2, JAGN1, LINC00852, IL17RC, CAMK1, VGLL4, TATDN2, SRGAP3, IQSEC1) 0.361608142445011 85 0.133938920608543 0.742486117188484 4793 0.214243921482126 2 1 1 -7.60192729081848 LTS-041 NA NA NA NA LTS-041 chr3 13660550 13661123 574 * FBLN2 NA 0 NA 0.867 1 NA NA NA NA NA LTS-041 chr3 13661124 14208838 547715 * c(FGD5P1, CHCHD4, FBLN2, LINC00620, TPRXL, WNT7A, XPC, TMEM43) 0.304025560269351 21 0.127547880832109 0.86386295386419 452 0.315433475515545 2 1 1 -7.0150229847632 LTS-041 chr3 14208839 14209733 895 * XPC NA 0 NA 0.487 1 NA NA NA NA NA LTS-041 chr3 14209734 20216468 6006735 * c(MIR4270, MIR3714, FGD5-AS1, SH3BP5-AS1, MIR4791, SGO1-AS1, GALNT15, KCNH8, METTL6, SGO1, PP2D1, EFHB, FGD5, DAZL, RFTN1, PLCL2, ANKRD28, CAPN7, HACL1, LSM3, DPH3, LOC339862, COL6A4P1, CCDC174, RAB5A, SATB1, RBSN, MRPS25, SLC6A6, BTD, MIR563, NR2C2, XPC, GRIP2, COLQ, C3orf20, EAF1, KAT2B, OXNAD1, SH3BP5, TBC1D5) 0.374186255434365 97 0.0992701620695745 0.726426935013432 3604 0.211761941207897 2 1 1 -8.15569622866487 LTS-041 chr3 20216469 24270501 4054033 * c(MIR548AC, SGO1-AS1, SGO1, LINC00691, NKIRAS1, VENTXP7, RPL15, THRB, UBE2E1, UBE2E2, ZNF385D, NR1D2) 0.343831407949855 14 0.0876699918588309 0.79400767534786 623 0.225220998591338 2 1 1 -7.0860474790214 LTS-041 chr3 24270502 25831594 1561093 * c(MIR4792, MIR4442, OXSM, NGLY1, RARB, THRB-AS1, THRB, TOP2B) 0.352231570998979 2 0.0212132034355964 1.03798381703513 358 0.279396575321577 3 2 1 -7.01083507870708 LTS-041 chr3 25831595 25836023 4429 * OXSM 0.405 1 NA 1.04384532864301 39 0.268340003772884 3 3 0 -5.76452803903162 LTS-041 chr3 25836024 45720364 19884341 * c(ACVR2B-AS1, PDCD6IP, KRBOX1, SNRK-AS1, CCDC13-AS1, OSBPL10-AS1, LARS2-AS1, ZNF197, CTDSPL, EIF1B, CRTAP, ARPP21, CMTM7, SCN11A, OSBPL10, ZNF501, LRRC3B, CCR4, CCR8, ACKR2, LYZL4, KLHL40, TRIM71, TMEM42, CTNNB1, ZCWPW2, CMC1, NEK10, CMTM8, CCDC13, CX3CR1, CYP8B1, XIRP1, TTC21A, STT3B, TRAK1, EXOSC7, CLASP2, GPD1L, LARS2, ZNF620, FBXL2, CNOT10, TMEM158, MYRIP, HIGD1A, SUSD5, GLB1, RBMS3, GOLGA4, ENTPD3-AS1, NA NA NA NA NA NA NA NA NA LTS-041 ZNF619, ZNF621, LINC00692, TCAIM, ZNF660, ACAA1, C3orf35, GADL1, ZNF860, ZNF445, ITGA9, TOPAZ1, ZNF662, RPSA, MIR128-2, MIR138-1, MIR26A1, MLH1, MOBP, EIF1B-AS1, MYD88, NKTR, VILL, ABHD5, DYNC1LI1, SS18L2, ZDHHC3, PLCD1, SNRK, CMTM6, SLC25A38, ULK4, OXSM, ANO10, ZKSCAN7, KIF15, SNORA6, KIAA1143, HHATL, WDR48, SNORA62, SCN5A, SCN10A, AZI2, TMPPE, LIMD1-AS1, LINC00693, CSRNP1, GORASP1, CDCP1, STAC, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MIR564, TGM4, TGFBR2, CLEC3B, FAM198A, UBP1, VIPR1, ZNF35, EOMES, POMGNT2, DCLK3, CCK, LIMD1, RPL14, SEC22C, ZNF502, LRRFIP2, ZBTB47, ACVR2B, SLC22A14, SLC22A13, SLC4A7, ENTPD3, EPM2AIP1, TRANK1, DLEC1, EXOG, XYLB, OXSR1) 0.354152067499535 248 0.120021365732675 1.04015060609791 12444 0.40652792153257 3 2 1 -6.98839691575073 LTS-041 NA NA NA NA LTS-041 chr3 45720365 46654281 933917 * c(LOC100132146, CXCR6, CCR9, CCR1, CCR3, CCR5, SACM1L, XCR1, LTF, LZTFL1, SLC6A20, LIMD1-AS1, TDGF1, CCR2, LRRC2, FYCO1, RTP3, LRRC2-AS1, LIMD1, CCRL2) 0.382859846317874 46 0.085784059305432 0.979978761738371 1580 0.293285333140798 3 2 1 -6.84887511300063 LTS-041 chr3 46654282 57542619 10888338 * c(SNORD19B, LINC00696, NRADDP, LOC100132146, BSN-AS2, PRSS46, MIR1226, MIR711, PARP3, MIR4271, MIR3938, IQCF4, ABHD14A-ACY1, TMEM110-MUSTN1, MIR4793, MIR4787, MIR4443, RBM5-AS1, MIR5193, ARHGEF3-AS1, CACNA2D3-AS1, RBM6, RBM5, NME6, TRAIP, ARIH2, NPRL2, CSPG5, USP19, SLC38A3, CYB561D2, TMEM115, WDR6, RASSF1, NISCH, TREX1, TUSC2, TWF2, CISH, GPR62, COL7A1, IQCF1, GLYCTK, PPM1M, LSMEM2, ASB14, CCDC12, DAG1, NA NA NA NA NA NA NA NA NA LTS-041 DOCK3, DUSP7, CELSR3, KLHDC8B, DNAH12, PDE12, ALAS1, DHX30, SCAP, LAMB2P1, RAD54L2, STAB1, NBEAL2, FAM208A, KLHL18, NAT6, ABHD14A, POC1A, NDUFAF3, ALS2CL, TMIE, PTPN23, DNAH1, ERC2, APPL1, GNL3, AMT, GNAI2, GNAT1, FBXW12, CCDC66, KIF9-AS1, GPX1, SPCS1, SETD2, GRM2, PRSS50, RBM15B, GMPPB, APEH, HYAL1, CCDC36, PRSS42, SPATA12, IMPDH2, ITIH1, ITIH3, ITIH4, C3orf62, TMEM110, PRSS45, AMIGO3, RHOA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CDHR4, FAM212A, IQCF2, IQCF5, MUSTN1, LAMB2, IQCF3, MIRLET7G, MIR135A1, MIR191, MAP4, TMEM89, IQCF6, SMIM4, MST1, MST1R, MYL3, MIR425, ARHGEF3, C3orf18, SHISA5, ZMYND10, TEX264, TMA7, ZNF589, HEMK1, IP6K2, SFMBT1, NCKIPSD, PHF7, PFKFB4, PLXNB1, TLR9, P4HTM, IL17RD, ELP6, QRICH1, DALRD3, PBRM1, CHDH, IL17RB, PRKAR2A, CACNA2D3, PRKCD, DCP1A, GLT8D1, SEMA3G, PCBP4, LRTM1, PTH1R, SELENOK, QARS, RPL29, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RNF123, SEMA3F, KIF9, SPINK8, ARIH2OS, C3orf84, CCDC71, NT5DC2, SLC26A6, SMARCC1, NEK4, SNORD19, SNORD69, TCTA, TKT, ERC2-IT1, TNNC1, UBA7, USP4, UQCRC1, WNT5A, CACNA1D, IFRD2, MAPKAPK3, SEMA3B, MANF, SLC25A20, CAMKV, ESRG, CCDC51, WDR82, CAMP, BAP1, HYAL3, ATRIP, NICN1, MON1A, ABHD14B, HYAL2, HESX1, BSN, UCN2, RRP9, RFT1, CACNA2D2, ACTR8, ACY1, DCAF1, IP6K1, CDC25A) 0.375214852162385 337 0.116504254471144 1.06765787794418 17818 0.288800607535562 3 2 1 -6.82612004472601 LTS-041 NA NA NA NA LTS-041 chr3 57542620 59033091 1490472 * c(RPP14, FAM107A, FAM3D, DNASE1L3, C3orf67, KCTD6, PDE12, DENND6A, FLNB, ARF4, PDHB, PXK, ABHD6, SLMAP, ACOX2) 0.389749350059542 25 0.0970905419355219 1.19566520053804 1702 0.310444567210762 3 2 1 -6.82742924921883 LTS-041 chr3 59033092 59035204 2113 * C3orf67 NA 0 NA 2.571 1 NA NA NA NA NA LTS-041 chr3 59035205 66551235 7516031 * c(LINC00994, PTPRG-AS1, PSMD6-AS2, ADAMTS9-AS2, PRICKLE2-AS1, MAGI1-AS1, SYNPR-AS1, PRICKLE2-AS2, PRICKLE2-AS3, SLC25A26, C3orf49, SNTN, SYNPR, PRICKLE2, C3orf67, FHIT, LRIG1, LINC00698, FEZF2, ADAMTS9, C3orf14, PTPRG, ATXN7, MIR548A2, THOC7, CADPS, MAGI1, PSMD6) 0.349864817380243 44 0.133280498693259 1.52882473873763 2116 0.552438126028608 5 3 2 -6.83112412322589 LTS-041 chr3 66551236 73453325 6902090 * c(MIR1284, MIR3136, MIR4272, ARL6IP5, FAM19A4, PPP4R2, LINC00870, PDZRN3, FRMD4B, RYBP, FOXP1, GPR27, EOGT, EIF4E3, FAM19A1, MITF, EBLN2, SHQ1, LMOD3, PROK2, TMF1, GXYLT2, KBTBD8, SUCLG2, UBA3) 0.418273479542011 49 0.113504217908381 1.3092282033672 2165 0.393394639768245 4 2 2 -6.80980580581745 LTS-041 chr3 73453326 73618470 165145 * PDZRN3 0 1 NA 1.34569191720176 31 0.909190592413567 4 4 0 -5.76443685923509 LTS-041 chr3 73618471 75787732 2169262 * c(ZNF717, MIR1324, PDZRN3, CNTN3, FAM86DP) 0.326300061066347 135 0.117901506710846 1.41241067472926 457 0.845682883085787 4 3 1 -6.75106216335704 LTS-041 chr3 75787733 75787739 7 * ZNF717 0.236 1 NA 0.695 1 NA NA NA NA NA LTS-041 chr3 75787740 89530057 13742318 * c(ZNF717, MIR4795, MIR5688, CADM2-AS2, EPHA3, CADM2, CHMP2B, GBE1, C3orf38, HTR1F, VGLL3, LINC00971, POU1F1, ZNF654, ROBO1, ROBO2, CGGBP1) 0.359544314046041 41 0.123480259111503 1.08350701887881 1641 0.337823036768234 3 2 1 -6.76112913112237 LTS-041 chr3 89530058 90283666 753609 * EPHA3 NA 0 NA 1.15841438924995 49 0.328119995264716 3 NA NA -5.77391538906209 LTS-041 chr3 93591838 93593119 1282 * PROS1 0.478 1 NA 1.338907866674 25 0.46174018668511 4 4 0 -5.76441157457343 LTS-041 chr3 93593120 94225255 632136 * c(ARL13B, DHFR2, STX19, PROS1, NSUN3) 0.296636290137356 2 0.292742207411231 1.46755045737502 340 0.380934972803914 4 3 1 -6.74721236366748 LTS-041 chr3 94225256 99509532 5284277 * c(MTHFD2P1, MIR548G, ST3GAL6-AS1, ST3GAL6, COL8A1, CRYBG3, DCBLD2, CPOX, GABRR3, LINC00879, OR5K1, OR5H1, GPR15, EPHA6, OR5K2, OR5H14, OR5H15, OR5K3, OR5K4, CLDND1, OR5H6, OR5H2, OR5AC2, ARL6, MINA) 0.408104573306391 29 0.0968288190418758 1.05903401176132 1238 0.347893884214064 3 2 1 -6.8921166881513 LTS-041 chr3 99509533 99509539 7 * c(MIR548G, COL8A1) NA 0 NA 0.885 1 NA NA NA NA NA LTS-041 chr3 99509540 116163927 16654388 * c(ZBTB11-AS1, ZBTB20-AS1, LINC00882, MIR548G, MIR3921, PVRL3-AS1, MIR4796, MIR4446, CFAP44-AS1, CD96, TFG, HHLA2, FILIP1L, COL8A1, ZPLD1, CD200R1, FAM172BP, LINC00635, DPPA2, CCDC80, BTLA, SPICE1, LOC152225, DRD3, TIGIT, USF3, ALCAM, MYH15, ZDHHC23, PLCXD2, GCSAM, NEPRO, ABI3BP, NECTIN3, GAP43, ZBTB20, ZBTB11, MORC1, LINC00636, SLC9C1, PDCL3P4, GTPBP8, TAGLN3, DUBR, TMPRSS7, CD200R1L, LNP1, FLJ22763, LINC01205, NA NA NA NA NA NA NA NA NA LTS-041 LSAMP, CD200, TRAT1, IMPG2, ATP6V1A, GRAMD1C, SIDT1, TRMT10C, SLC35A5, TMEM45A, IFT57, DPPA4, ABHD10, TBC1D23, CFAP44, NIT2, BBX, PCNP, SENP7, CCDC191, KIAA1524, RPL24, NFKBIZ, ATG3, TMEM30CP, LINC00488, MIR548A3, MIR567, MIR568, ZNF80, ZBED2, CEP97, C3orf52, QTRT2, NAA50, CMSS1, RETNLB, CCDC54, ADGRG7, CBLB, PHLDB2, BOC, NXPE3, CD47, GUCA1C, DZIP3, TOMM70) 0.385355376365923 152 0.116466335975147 0.93666553385045 8054 0.390247304935223 2 1 1 -7.38559985391036 LTS-041 NA NA NA NA LTS-041 chr3 116163928 116164002 75 * LSAMP NA 0 NA 0.703 1 NA NA NA NA NA LTS-041 chr3 116164003 116569214 405212 * c(TUSC7, LSAMP) NA 0 NA 0.554694273966471 40 0.171714564515264 1 NA NA -5.78310344302936 LTS-041 chr3 116569215 122606067 6036853 * c(LOC100129550, IGSF11-AS1, COX17, POLQ, FSTL1, LRRC58, CCDC58, ADPRH, CSTA, DTX3L, IGSF11, C3orf30, PARP15, GPR156, FAM162A, GOLGB1, RABL3, ILDR1, GSK3B, GTF2E1, HCLS1, HGD, KPNA1, MIR198, NDUFB4, ARGFX, TIMMDC1, PLA1A, FBXO40, WDR5B, PARP14, TMEM39A, EAF2, POGLUT1, ARHGAP31, POPDC2, SLC15A2, UPK1B, HSPBAP1, PARP9, CASR, DIRC2, B4GALT4, NR1I2, MAATS1, CD80, CD86, STXBP5L, IQCB1) 0.383097560093904 123 0.126540818322992 0.91652434475468 4909 0.354367320860805 2 1 1 -6.93117196656749 LTS-041 chr3 122606068 124376378 1770311 * c(LOC100129550, MYLK-AS1, MIR5002, PDIA5, ADCY5, HACD2, SEC22A, MYLK, SEMA5B, ROPN1, CCDC14, KALRN) 0.401165291259315 49 0.0902958101648871 1.01303834085661 1551 0.293189167292451 3 2 1 -6.91534719220283 LTS-041 chr3 124376379 133941380 9565002 * c(FAM86JP, MIR548I1, TMCC1-AS1, NPHP3-ACAD11, ISY1-RAB43, MIR5092, MIR5704, ALDH1L1-AS2, ALDH1L1-AS1, ALDH1L1, TOPBP1, MRPL3, MGLL, TXNRD3, OSBPL11, CPNE4, TPRA1, UROC1, NUDT16, COL6A6, RPL32P3, H1FOO, ROPN1B, C3orf22, NUDT16P1, DNAJB8, CHST13, KBTBD12, ALG1L, COPG1, TMCC1, PLXND1, DNAJC13, LINC01565, NUP210P1, COL6A5, GATA2, NPHP3, ATP2C1, GP9, DNAJB8-AS1, ACAD9, ASTE1, KLF15, SEC61A1, PIK3R4, RAB43, LOC339874, NA NA NA NA NA NA NA NA NA LTS-041 H1FX-AS1, CFAP100, NPHP3-AS1, ITGB5, MCM2, PODXL2, ACKR4, RAB6B, PLXNA1, SLC41A3, ACPP, CDV3, IFT122, MUC13, HMCES, ISY1, HEG1, KIAA1257, SRPRB, RHO, EEFSEC, RPN1, RYK, ALG1L2, TXNRD3NB, COL6A4P2, LOC653712, SLCO2A1, TMEM108, SNORA7B, SNORA58, TF, TRH, FAM86HP, UMPS, CNBP, ZNF148, RAB7A, ZXDC, EFCC1, NEK11, UBA5, C3orf36, ABTB1, ACAD11, BFSP2, CHCHD6, SLC12A8, RUVBL1, SNX4, MBD4, H1FX, KALRN, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC90246, EFCAB12) 0.380234270929003 182 0.122210009957892 0.952228191956604 8389 0.251024262064136 2 1 1 -7.85277913858609 LTS-041 NA NA NA NA LTS-041 chr3 133941381 139894936 5953556 * c(MIR4788, STAG1, PISRT1, DZIP1L, EPHB1, MRAS, ANAPC13, ARMC8, KY, NME9, NMNAT3, PRR23B, PRR23C, FOXL2NB, NCK1, PCCB, A4GNT, DBR1, CLDN18, AMOTL2, PIK3CB, IL20RB, MSL2, FAIM, PPP2R3A, MRPS22, RBP1, RBP2, BPESC1, RYK, CLSTN2, FOXL2, PRR23A, CEP63, CEP70, SLC35G2, ESYT3, SOX14, COPB2) 0.36314891994389 31 0.181171225373197 1.09832560076518 3114 0.314528602280654 3 2 1 -6.73430049515633 LTS-041 chr3 139894937 140122428 227492 * CLSTN2 NA 0 NA 0.768 1 NA NA NA NA NA LTS-041 chr3 140122429 150285664 10163236 * c(WWTR1-AS1, LOC100289361, LOC100507389, HLTF-AS1, SLC9A9-AS1, RNF13, TM4SF18, GRK7, CP, CPA3, CPB1, AGTR1, C3orf58, U2SURP, ZBTB38, GK5, WWTR1, PCOLCE2, SERP1, SLC9A9, TRIM42, GYG1, PAQR9, PLSCR5, ANKUB1, TM4SF1, ATP1B3, COMMD2, PFN2, PLOD2, PLS1, PLSCR1, XRN1, ATR, SLC25A36, PLSCR2, PLSCR4, RASA2, CLSTN2, LOC646903, HLTF, TFDP2, TM4SF4, TRPC1, ZIC1, EIF2A, ZIC4, HPS3, SPSB4, PXYLP1, CHST2, RNF7, NA NA NA NA NA NA NA NA NA LTS-041 TSC22D2) 0.361356301897514 98 0.110770260447565 0.829827815593961 5074 0.259820128568994 2 1 1 -6.80522496983913 LTS-041 NA NA NA NA LTS-041 chr3 150285665 150611306 325642 * c(CLRN1-AS1, ERICH6, SERP1, SELENOT, SIAH2, CLRN1, EIF2A) 0 1 NA 0.827173299576636 247 0.38571577753334 2 2 0 -5.76489194238994 LTS-041 chr3 150611307 150611318 12 * c(CLRN1-AS1, CLRN1) NA 0 NA 0.825 1 NA NA NA NA NA LTS-041 chr3 150611319 150611986 668 * c(CLRN1-AS1, CLRN1) NA 0 NA 0.725 1 NA NA NA NA NA LTS-041 chr3 150611987 152177192 1565206 * c(MIR548H2, MIR5186, MED12L, CLRN1-AS1, AADAC, AADACP1, IGSF10, GPR171, AADACL2, MBNL1-AS1, MBNL1, P2RY13, GPR87, SUCNR1, TMEM14EP, P2RY12, CLRN1, P2RY14) 0.2781820061589 14 0.101739081278242 0.755701366072706 1047 0.187778888267394 2 2 0 -7.44321078982629 LTS-041 chr3 152177193 152552698 375506 * MBNL1 NA 0 NA 1.487 1 NA NA NA NA NA LTS-041 chr3 152552699 164059159 11506461 * c(TIPARP-AS1, LINC00881, MIR3919, IQCJ-SCHIP1, ARHGEF26-AS1, LOC100507537, SMC4, KCNAB1-AS2, KCNAB1-AS1, LOC101243545, OTOL1, PPM1L, PQLC2L, C3orf79, SPTSSB, DHX36, PLCH1, TIPARP, ARHGEF26, C3orf33, TRIM59, SCHIP1, LINC00880, GPR149, IL12A, KPNA4, LEKR1, C3orf80, MIR15B, MIR16-2, MLF1, MME, P2RY1, NMD3, RSRC1, LXN, CCNL1, IFT80, PTX3, RAP2B, RARRES1, PA2G4P4, LINC01192, SHOX2, MFSD1, IQCJ, SSR3, SCARNA7, NA NA NA NA NA NA NA NA NA LTS-041 LINC00886, KCNAB1, VEPH1, ARL14, GFM1, B3GALNT1, GMPS, SLC33A1) 0.204372413551428 100 0.0994077792009084 1.25406338671231 4234 0.396161356131429 4 4 0 -7.45345891332499 LTS-041 NA NA NA NA LTS-041 chr3 164059160 164696980 637821 * SI NA 0 NA 1.26947468662779 9 0.205353015831546 4 NA NA -5.81269430082309 LTS-041 chr3 164696981 164697058 78 * SI NA 0 NA 1.777 1 NA NA NA NA NA LTS-041 chr3 164697059 164697082 24 * SI 0.183 1 NA 5.659 1 NA NA NA NA NA LTS-041 chr3 164697083 168801474 4104392 * c(PDCD10, WDR49, MECOM, SLITRK3, GOLIM4, SERPINI1, SERPINI2, BCHE, LINC01330, SI, MIR551B, ZBBX, EGFEM1P) 0.135783650770621 14 0.0756231620428731 1.67455187376546 917 0.66814932267856 5 5 0 -6.87013588877975 LTS-041 chr3 168801475 170201329 1399855 * c(LOC100128164, LRRC34, MECOM, GPR160, LRRIQ4, SAMD7, CLDN11, PRKCI, MYNN, SLC7A14, SKIL, TERC, SEC62, LRRC31, PHC3, ACTRT3) 0.122533914116927 28 0.080947824334878 1.92266400450931 1275 0.615610762937571 5 5 0 -6.84085354056572 LTS-041 chr3 170201330 170203997 2668 * c(CLDN11, SLC7A14) NA 0 NA 1.681 1 NA NA NA NA NA LTS-041 chr3 170203998 172166033 1962036 * c(RPL22L1, TNIK, GHSR, TMEM212, CLDN11, PLD1, EIF5A2, SLC7A14, FNDC3B, SLC2A2, MIR569) 0.141018759147835 10 0.117048707810039 1.554729435859 1080 0.445216227856844 5 5 0 -6.81873865560694 LTS-041 chr3 172166034 172428782 262749 * c(GHSR, NCEH1, TNFSF10) 0.373 1 NA 1.46933408398217 157 0.377790881233042 4 4 0 -5.77028562971771 LTS-041 chr3 172428783 172607531 178749 * c(ECT2, NCEH1, SPATA16) 0.236 1 NA 1.55661667054035 155 0.460655551898339 5 5 0 -5.76540715939408 LTS-041 chr3 172607532 184083021 11475490 * c(MIR1224, LINC00578, LINC00888, ABCC5, MIR4789, NAALADL2-AS3, ABCC5-AS1, LINC01014, ALG3, KCNMB2, AP2M1, CLCN2, DNAJC19, FAM131A, TTC14, HTR3C, DVL3, EIF4G1, HTR3D, NLGN1, MCF2L2, ATP11B, NAALADL2, LAMP3, KCNMB3, HTR3E, CCDC39, SOX2-OT, FLJ46066, NDUFB5, ZNF639, PEX5L, PIK3CA, DCUN1D1, POLR2H, KLHL24, ABCF3, PARL, MFN1, YEATS2, MCCC1, PSMD2, MRPL47, GNB4, ZMAT3, SOX2, SNORD66, TBL1XR1, MAP6D1, FXR1, NA NA NA NA NA NA NA NA NA LTS-041 SPATA16, B3GNT5, ACTL6A, EIF2B5, USP13, KLHL6, VWA5B2, CAMK2N2, ECE2) 0.304915876073778 110 0.132210900402177 1.15393910235474 5813 0.361917014231553 3 2 1 -6.95606920827613 LTS-041 NA NA NA NA LTS-041 chr3 184083022 184084481 1460 * POLR2H NA 0 NA 0.532 1 NA NA NA NA NA LTS-041 chr3 184084482 184099263 14782 * c(POLR2H, THPO, CHRD) NA 0 NA 0.597498594719762 89 0.16470155089808 1 NA NA -5.76464226270479 LTS-041 chr3 184099264 195452017 11352754 * c(MIR944, DPPA2P3, LINC00887, LOC100131635, SNAR-I, TMEM44-AS1, LOC100507391, MIR5692C1, OPA1-AS1, TPRG1-AS2, ADIPOQ-AS1, XXYLT1-AS2, IGF2BP2, CLDN16, RPL39L, LRRC15, FAM43A, TMEM207, RTP1, CPN2, CRYGS, MB21D2, XXYLT1, CCDC50, PYDC2, DGKG, EHHADH, AHSG, EIF4A2, LIPH, MUC20, EPHB3, ETV5, FGF12, VPS8, ACAP2, LOC253573, UTS2B, FETUB, GP5, C3orf70, TPRG1, HRG, HES1, EHHADH-AS1, LPP-AS2, NMRAL1P1, RTP2, OSTN, NA NA NA NA NA NA NA NA NA LTS-041 ATP13A5, APOD, IL1RAP, KNG1, FLJ42393, LINC00884, LPP, OPA1, DNAJB11, PPP1R2, TBCCD1, P3H2, LSG1, MASP1, HRASLS, SENP2, RFC4, BCL6, SNORA63, SNORD2, SNORA4, RTP4, MAGEF1, TRA2B, IGF2BP2-AS1, GMNC, LOC647323, ST6GAL1, SST, SNORA81, MIR570, SDHAP2, ATP13A3, ATP13A4, MGC2889, TP63, CHRD, TMEM41A, CLDN1, MAP3K13, TMEM44, ADIPOQ) 0.314573431431581 144 0.135537558015729 1.17084684063817 6819 0.401432814431937 3 2 1 -6.95740343881495 LTS-041 NA NA NA NA LTS-041 chr3 195452018 195452618 601 * MUC20 NA 0 NA 2.819 1 NA NA NA NA NA LTS-041 chr3 195452619 195477791 25173 * c(MUC20, MUC4) 0.336695168623574 16 0.0887383560436711 1.70305653122666 91 2.01283720514298 15 10 5 -6.73672573391239 LTS-041 chr3 195477792 195477880 89 * MUC4 NA 0 NA 1.226 1 NA NA NA NA NA LTS-041 chr3 195477881 196076335 598455 * c(TM4SF19-TCTEX1D2, TNK2, TM4SF19, ZDHHC19, SLC51A, TCTEX1D2, SDHAP1, LINC00885, MUC4, PCYT1A, TFRC) 0.260921106372685 27 0.140025923525822 1.14622698063148 919 0.458977215043367 4 3 1 -6.84934065322889 LTS-041 chr3 196076336 196076434 99 * character(0) NA 0 NA 1.229 1 NA NA NA NA NA LTS-041 chr3 196076435 197769410 1692976 * c(MIR922, MFI2-AS1, DLG1-AS1, MIR4797, NCBP2-AS2, RNF168, DLG1, FBXO45, SENP5, LOC220729, NCBP2, SMCO1, UBXN7, WDR53, NRROS, MELTF, PAK2, PIGX, RPL35A, BDH1, PIGZ, IQCG, FYTTD1, LRCH3, CEP19, LMLN, RUBCN) 0.257229912186761 51 0.109500548839165 1.33632271785746 2252 0.3441219945015 4 3 1 -6.85872109093051 LTS-041 chr3 197769411 197770512 1102 * LMLN NA 0 NA 1.31570098756296 25 0.480628449705869 4 NA NA -5.76441414971683 LTS-041 chr4 53174 60335 7162 * c(ZNF595, ZNF718) 0.269 1 NA 0.816671340443553 15 0.165624216080804 2 2 0 -5.76456984184473 LTS-041 chr4 60336 5894728 5834393 * c(MIR943, LOC100129917, LOC100130872, LOC100133461, TMED11P, STX18-AS1, MIR4800, HTT-AS, LINC01587, MFSD10, MAEA, PCGF3, SPON2, TACC3, MXD4, CPLX1, SLC26A1, ADD1, EVC2, OTOP1, CRMP1, CTBP1, ADRA2C, ZNF595, FAM53A, DGKQ, ZBTB49, ZNF721, EVC, FGFR3, ZNF718, GAK, NSG1, CRIPAK, DOK7, LINC00955, RNF212, GRK4, HTT, HGFAC, NOP14-AS1, NAT8L, IDUA, MSANTD1, FAM86EP, POLN, LETM1, C4orf48, CFAP99, LRPAP1, MSX1, NA NA NA NA NA NA NA NA NA LTS-041 MYL5, PDE6B, ATP5I, STX18, FGFRL1, CYTL1, PIGG, STK32B, LYAR, UVSSA, ZFYVE28, RGS12, RNF4, ZNF876P, SH3BP2, ZNF732, SCARNA22, WHSC1, NELFA, ZNF141, SLBP, TNIP2, HAUS3, ABCA11P, MFSD7, TMEM175, TMEM128, NOP14, FAM193A, CTBP1-AS2, TMEM129) 0.198527310019188 172 0.133720450368406 0.881839339145674 7078 0.291935327665581 2 2 0 -6.81615398090786 LTS-041 NA NA NA NA LTS-041 chr4 5894729 5924921 30193 * CRMP1 NA 0 NA 0.665 1 NA NA NA NA NA LTS-041 chr4 5924922 7042918 1117997 * c(LOC100129931, MIR378D1, MRFAP1L1, JAKMIP1, MAN2B2, CCDC96, LOC285484, PPP2R2C, BLOC1S4, TBC1D14, S100P, WFS1, MRFAP1, LOC93622, KIAA0232) 0.149738327040191 33 0.1065801110703 0.694255662006279 1098 0.258964715816469 2 2 0 -7.17958584648898 LTS-041 chr4 7042919 7043045 127 * c(LOC100129931, CCDC96) NA 0 NA 0.712 1 NA NA NA NA NA LTS-041 chr4 7043046 8418305 1375260 * c(LOC100129931, MIR4274, MIR4798, CCDC96, SH3TC1, SORCS2, AFAP1, FLJ36777, PSAPL1, GRPEL1, ACOX3, ABLIM2, AFAP1-AS1, TADA2B, HTRA3) 0.23874202456324 38 0.101497945098287 0.757225657135586 1265 0.211488740570396 2 2 0 -7.06621144085906 LTS-041 chr4 8418306 10118344 1700039 * c(USP17L10, USP17L11, USP17L12, USP17L13, USP17L17, USP17L19, USP17L20, USP17L15, MIR548I2, MIR3138, TRMT44, DRD5, GPR78, HMX1, USP17L6P, USP17L9P, SLC2A9, DEFB131, LOC650293, USP17L24, USP17L5, USP17L27, USP17L28, USP17L30, ACOX3, CPZ, WDR1) 0.404917649936128 27 0.098707473081653 0.604483418022589 530 0.195903956568066 1 1 0 -7.65618141917483 LTS-041 chr4 10118345 10118350 6 * WDR1 0.275 1 NA 0.058 1 NA NA NA NA NA LTS-041 chr4 10118351 11401825 1283475 * c(CLNK, MIR572, ZNF518B, WDR1, HS3ST1) 0.280823839467548 19 0.125625266576192 0.505150145250075 492 0.136535257141275 1 1 0 -7.46223531256895 LTS-041 chr4 13369373 13621733 252361 * c(BOD1L1, LINC01097, LINC01096, NKX3-2, RAB28) 0.239632199518346 3 0.219538910750084 0.639219035013111 437 0.189041081052809 1 1 0 -6.78647437262138 LTS-041 chr4 13621734 13627960 6227 * BOD1L1 NA 0 NA 1.105 1 NA NA NA NA NA LTS-041 chr4 13627961 15826707 2198747 * c(MIR5091, C1QTNF7, CPEB2, LINC01085, BOD1L1, FBXL5, FAM200B, CPEB2-AS1, CC2D2A, BST1, CD38) 0.174430872580894 6 0.0985645304694679 0.897833115253189 781 0.243159726872234 2 2 0 -6.83776377269592 LTS-041 chr4 15826708 15835840 9133 * CD38 NA 0 NA 1.093 1 NA NA NA NA NA LTS-041 chr4 15835841 20703948 4868108 * c(SLIT2-IT1, MIR548AX, PACRGL, TAPT1, TAPT1-AS1, LCORL, FAM184B, MIR218-1, LAP3, DCAF16, QDPR, NCAPG, CLRN2, MED28, FGFBP2, PROM1, LDB2, SLIT2, CD38, FGFBP1) 0.0719867508413853 37 0.0903548559846121 1.0592939044139 1567 0.499243064603708 3 3 0 -7.13640541873513 LTS-041 chr4 20703949 20706039 2091 * PACRGL NA 0 NA 0.794 1 NA NA NA NA NA LTS-041 chr4 20706040 36067988 15361949 * c(MIR4275, LOC100505912, SLC34A2, PPARGC1A, ARAP2, PACRGL, DHX15, ADGRA3, SEL1L3, SEPSECS-AS1, ZCCHC4, ANAPC4, RBPJ, KCNIP4-IT1, SMIM20, PCDH7, SEPSECS, LGI2, TBC1D19, PI4K2B, STIM2, GBA3, SOD3, MIR573, KCNIP4, CCKAR, CCDC149) 0.131904229456056 42 0.113349195275866 0.876413329653279 2461 0.260795792489306 2 2 0 -7.09061067378239 LTS-041 chr4 36067989 37432217 1364229 * c(MIR4801, ARAP2, DTHD1, NWD2) 0.0868635834997125 8 0.0953601256890351 0.604433277482765 363 0.276104697996092 2 2 0 -8.38251828365355 LTS-041 chr4 37432218 37432316 99 * NWD2 NA 0 NA 0.634 1 NA NA NA NA NA LTS-041 chr4 37432317 44626864 7194548 * c(MIR4802, UGDH-AS1, UCHL1-AS1, TLR6, ATP8A1, SLC30A9, PTTG2, LIAS, SHISA3, KLB, SMIM14, LIMCH1, TBC1D1, PDS5A, DCAF4L1, YIPF7, UBE2K, APBB2, LOC344967, KCTD8, BEND4, GRXCR1, RHOH, LOC401127, KLHL5, KLF3, RBM47, TMEM33, PGM2, C4orf19, CHRNA9, N4BP2, NWD2, WDR19, RFC1, RPL9, MIR574, TLR1, UCHL1, UGDH, RELL1, KLF3-AS1, NSUN7, TMEM156, TLR10, PHOX2B, FAM114A1) 0.178751715908791 100 0.128048631859978 0.708235159160433 4453 0.244386515740736 2 2 0 -8.38805218413872 LTS-041 chr4 44626865 44631383 4519 * YIPF7 NA 0 NA 0.818 1 NA NA NA NA NA LTS-041 chr4 44631384 47322239 2690856 * c(GNPDA2, COX7B2, GABRA2, GABRA4, GABRB1, GABRG1, YIPF7, GUF1) 0.353525291542732 40 0.106673762784795 0.863570064609594 994 0.288398816781408 2 1 1 -6.82613257432446 LTS-041 chr4 47322240 48683254 1361015 * c(CORIN, CNGA1, NFXL1, NIPAL1, SLC10A4, GABRB1, FRYL, ZAR1, COMMD8, ATP10D, SLAIN2, TEC, TXK) 0.186890365443701 40 0.116524430694674 0.726842235599471 1569 0.233746779826557 2 2 0 -7.0465226517965 LTS-041 chr4 48683255 48833500 150246 * c(FRYL, OCIAD1) NA 0 NA 1.389 1 NA NA NA NA NA LTS-041 chr4 48833501 48887645 54145 * c(OCIAD2, OCIAD1) NA 0 NA 1.4047896019829 67 1.14812325023866 4 NA NA -5.76442952195742 LTS-041 chr4 48887646 48894718 7073 * OCIAD2 NA 0 NA 0.826 1 NA NA NA NA NA LTS-041 chr4 48894719 49019328 124610 * c(OCIAD2, CWH43) 0 2 0 0.963766563202877 78 0.52710656481335 0 0 0 -Inf LTS-041 chr4 49019329 49064107 44779 * CWH43 NA 0 NA 0.902019867654732 39 0.201550611814519 2 NA NA -5.76741911943296 LTS-041 chr4 52709193 52780126 70934 * DCUN1D4 0 1 NA 1.1619942600073 83 0.657516127430594 3 3 0 -5.7646631407246 LTS-041 chr4 52780127 56278098 3497972 * c(ERVMER34-1, SRD5A3-AS1, MIR4449, LNX1-AS1, LNX1-AS2, SPATA18, LINC01618, SCFD2, GSX2, DCUN1D4, CHIC2, LRRC66, KDR, KIT, RPL21P44, PDGFRA, TMEM165, DANCR, SGCB, USP46, RASL11B, SNORA26, SRD5A3, FIP1L1, LNX1) 0.374282945892503 21 0.138191585437444 1.02072268998786 1636 0.284476382647807 3 2 1 -6.89272513921643 LTS-041 chr4 56278099 56283253 5155 * TMEM165 NA 0 NA 1.528 1 NA NA NA NA NA LTS-041 chr4 56283254 57976160 1692907 * c(THEGL, PAICS, NMU, ARL9, AASDH, PDCL2, IGFBP7-AS1, IGFBP7, POLR2B, PPAT, EXOC1, TMEM165, KIAA1211, REST, LOC644145, SPINK2, SRP72, NOA1, HOPX, CLOCK, CEP135) 0.399076459024485 42 0.108706415565658 1.28111109022747 1584 0.327664675911397 4 2 2 -6.77339641252771 LTS-041 chr4 57976161 62938175 4962015 * c(ADGRL3, IGFBP7-AS1, IGFBP7) 0.305319083564899 5 0.0655286197016235 1.06237344619828 208 0.245268081467016 3 2 1 -7.27730895701821 LTS-041 chr4 63685771 109572015 45886245 * c(FAM47E, FTLP10, EPHA5-AS1, CSN1S2BP, THAP9-AS1, MIR3684, LINC01094, LINC01088, LINC00989, LOC100506746, LOC100507053, GIMD1, MIR4450, MIR4451, FAM47E-STBD1, MIR5705, LINC01216, ARHGEF38-IT1, TSPAN5, PYURF, ENAM, STPG2-AS1, FAM13A, CDS1, CXCL13, CENPC, PDLIM5, CENPE, UGT2B11, HPSE, SMR3B, NPFFR2, PPBPP2, UGT2A1, CCNI, HELQ, CYP2U1, DDIT4L, PCAT4, ANTXR2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, LIN54, NA NA NA NA NA NA NA NA NA LTS-041 TMPRSS11B, C4orf36, SLC9B2, CSN1S1, CSN2, CSN3, SLC9B1, PAQR3, THAP6, C4orf26, PPM1K, RASGEF1B, DCK, TIGD2, RASSF6, SGMS2, AFM, AFP, DMP1, DSPP, EIF4E, EPHA5, EREG, ALB, FGF5, SEC31A, RUFY3, MMRN1, WDFY3, METAP1, CNOT6L, TECRL, C4orf22, EPGN, NPNT, LOC256880, AMBN, PARM1, RCHY1, FDCSP, ANKRD17, STAP1, GC, NAP1L5, SMR3A, PPA2, DAPP1, GK2, DKK2, NAAA, COQ2, SULT1B1, HPGDS, GNRHR, RPL34-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 FAM13A-AS1, GPRIN3, COX18, STPG2, CSN1S2AP, GRID2, CXCL1, CXCL2, CXCL3, GRSF1, H2AFZ, HADH, ANXA3, HNRNPD, HTN1, HTN3, IBSP, CCDC158, TMPRSS11A, SOWAHB, SLC10A6, HSD17B13, JCHAIN, CXCL8, PCNAP1, CXCL10, AREG, TMPRSS11F, LOC401134, SYT14P1, TMPRSS11BNL, PRR27, AMTN, CCSER1, WDFY3-AS2, MANBA, ART3, CXCL9, AFF1, LINC00575, MTHFD2L, LOC441025, TMEM150C, MTTP, MUC7, ATOH1, NFKB1, NKX6-1, CISD2, MRPS18C, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 COPS4, HSD17B11, LEF1, HERC5, PLAC8, PDHA2, EMCN, PF4, PF4V1, PKD2, NUDT9, NUP54, UGT2B28, PPEF2, PPBP, TET2, ARHGEF38, ODAM, HERC6, UBA6-AS1, LOC550113, BANK1, SDAD1, UBA6, PPP3CA, BMP2K, SEPT11, PRKG2, MAPK10, BDH2, SMARCAD1, MEPE, PRDM8, UTP3, INTS12, UGT2A2, KLHL8, SHROOM3, PTPN13, ENOPH1, OPRPN, OSTC, RAP1GDS1, RPL34, CXCL6, CXCL11, CXCL5, SLC39A8, LEF1-AS1, SNCA-AS1, TMPRSS11GP, MRPL1, BMP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 BMPR1B, SNCA, SPP1, STATH, SULT1E1, BTC, TACR3, MIR575, LOC728040, UBE2D3, UGT2B4, UGT2B7, UGT2B17, THAP9, GSTCD, SCD5, DNAJB14, FRAS1, CXXC4, ARHGAP24, SPARCL1, C4orf17, FAM175A, NAA11, GPAT3, CABS1, USO1, UNC5C, LAMTOR3, SLC4A4, HERC3, STBD1, CDKL2, FLJ20021, CCNG2, PAPSS1, AIMP1, MOB1B, TRMT10A, TBCK, TMPRSS11D, ABCG2, SCARB2, ADAMTS3, G3BP2, HNRNPDL) 0.35724774926761 489 0.128310890851818 0.728764070637341 21240 0.254145254696737 2 1 1 -10.9545958262305 LTS-041 NA NA NA NA LTS-041 chr4 109572016 119414653 9842638 * c(SNHG8, MIR1243, MIR1973, SEC24B-AS1, SEC24B, RRH, C4orf32, TRAM1L1, EGF, ENPEP, ANK2, CFI, LRIT3, MIR302B, LARP7, PITX2, GAR1, MCUB, ZGRF1, AP1AR, OSTC, NEUROG2, NDST4, ETNPPL, SNORA24, MIR577, UGT8, ELOVL6, ARSJ, ALPK1, PLA2G12A, CAMK2D, CASP6, COL25A1, PRSS12, TIFA, NDST3) 0.353727084020409 58 0.107081048170033 0.608313539144724 3551 0.208223988514256 1 1 0 -7.2952340536961 LTS-041 chr4 119414654 119414752 99 * character(0) NA 0 NA 0.512 1 NA NA NA NA NA LTS-041 chr4 119414753 119476651 61899 * CEP170P1 0.42402337858766 4 0.10252276170035 0.473993051305042 123 0.157155216994034 0 0 0 -7.00778183576842 LTS-041 chr4 119476652 119476980 329 * character(0) NA 0 NA 0.717 1 NA NA NA NA NA LTS-041 chr4 119476981 122052790 2575810 * c(PRDM5, SYNPO2, FABP2, LINC01061, C4orf3, MAD2L1, MYOZ2, USP53, METTL14, LOC645513, NDNF, TNIP3, PDE5A, SEC24D) 0.375355416637739 31 0.103294141024031 0.653479883213446 1306 0.194399108882605 1 1 0 -7.75235451499532 LTS-041 chr4 122052791 122589388 536598 * c(ANXA5, TNIP3, QRFPR) 0.166555727829304 3 0.212464899061782 0.51005272160677 168 0.283917029990689 1 1 0 -6.95562999016046 LTS-041 chr4 122589389 122589491 103 * ANXA5 NA 0 NA 0.649 1 NA NA NA NA NA LTS-041 chr4 122589492 126413851 3824360 * c(PP12613, SPRY1, NUDT6, TMEM155, ADAD1, SPATA5, BBS12, FGF2, LINC01091, ANXA5, IL2, EXOSC9, BBS7, ANKRD50, IL21, TRPC3, CETN4P, FAT4, KIAA1109, CCNA2) 0.33707632399377 26 0.0833164957348691 0.619701238178503 1931 0.221141590163523 1 1 0 -7.22382576335131 LTS-041 chr4 126413852 149358060 22944209 * c(SCOC-AS1, MIR2054, LINC01095, MIR4799, LINC00499, ANAPC10, PGRMC2, CLGN, PLK4, LSM6, SCLT1, C4orf33, PABPC4L, ZNF827, MGAT4D, FREM3, MMAA, EDNRA, ELF2, HSPA4L, TBC1D9, SLC7A11, GAB1, ELMOD2, MFSD8, NOCT, INTU, ZNF330, GYPA, GYPB, GYPE, IL15, SMAD1, MGST2, NR3C2, GUSBP5, NDUFC1, PCDH18, POU4F2, OTUD4, LARP1B, MAML3, TMEM184C, RNF150, PCDH10, ABCE1, SCOC, SLC7A11-AS1, LINC00616, HHIP, TNRC18P1, HHIP-AS1, NA NA NA NA NA NA NA NA NA LTS-041 C4orf51, UCP1, FAT4, ARHGAP10, JADE1, NAA15, ABHD18, SETD7, SLC25A31, RAB33B, TTC29, SLC10A7, USP38, SMARCA5, MGARP, INPP4B, PRMT9) 0.311121168493678 97 0.13580837584057 0.886871987099662 6566 0.243613511794279 2 1 1 -7.48529855785548 LTS-041 NA NA NA NA LTS-041 chr4 150999451 152570739 1571289 * c(MAB21L2, SH3D19, DCLK2, PRSS48, RPS3A, FAM160A1, SNORD73A, LRBA) 0.377025858109436 5 0.0531526104721113 1.08535939225883 811 0.270304080824871 3 2 1 -6.76422823090838 LTS-041 chr4 152570740 156297104 3726365 * c(MIR3140, RBM46, TIGD4, TMEM154, FGA, FGB, FGG, KIAA0922, TRIM2, ARFIP1, RNF175, ANXA2P1, NPY2R, GATB, PLRG1, DKFZP434I0714, DCHS2, FBXW7, SFRP2, TLR2, FAM160A1, MAP9, MND1, FHDC1, LRAT) 0.350366473983184 58 0.136343885717013 0.863814596382444 2491 0.236557215231757 2 1 1 -6.81506383573163 LTS-041 chr4 156297105 156617913 320809 * c(GUCY1A3, MAP9) NA 0 NA 1.902 1 NA NA NA NA NA LTS-041 chr4 156617914 158284804 1666891 * c(CTSO, GLRB, GRIA2, GUCY1A3, GUCY1B3, ASIC5, PDGFC, TDO2) 0.376151627361682 16 0.116436248651354 1.33943176367471 752 0.393201360148501 4 2 2 -6.74840685850022 LTS-041 chr4 159045610 159442950 397341 * c(FAM198B, TMEM144, RXFP1) 0.482 1 NA 0.941985773907774 295 0.861226076221638 2 2 0 -5.76835506438007 LTS-041 chr4 159442951 159442980 30 * RXFP1 NA 0 NA 1.284 1 NA NA NA NA NA LTS-041 chr4 159442981 160107840 664860 * c(MIR3688-1, MIR3688-2, C4orf45, C4orf46, ETFDH, PPID, FNIP2, RXFP1) 0.396617416463324 11 0.137166653779594 1.22557700454654 589 0.286040462604426 4 2 2 -6.79017333662338 LTS-041 chr4 160107841 167024343 6916503 * c(LINC01207, APELA, KLHL2, CPE, FAM218A, TRIM60, TMEM192, ANP32C, GK3P, TRIM61, NPY1R, NPY5R, MARCH1, TMA16, FSTL5, MSMO1, MIR578, TLL1, TKTL2, NAF1, RAPGEF2) 0.290159253669586 27 0.130676641429846 0.844203032609833 1485 0.266077619993011 2 2 0 -7.05692680591064 LTS-041 chr4 167024344 170511977 3487634 * c(ANXA10, PALLD, NEK1, SPOCK3, DDX60, SH3RF1, TLL1, CBR4, DDX60L) 0.291668020341351 30 0.102047521046443 0.950719879388756 1232 0.359577939111991 3 2 1 -7.37666977851328 LTS-041 chr4 170511978 190945989 20434012 * c(CLDN24, MIR1305, MIR4276, MIR3945, LOC100506085, LOC100506122, LINC01093, ADAM29, SCRG1, WDR17, CLCN3, ZFP42, SPATA4, ENPP6, ASB5, WWC2-AS2, DCTD, AGA, RWDD4, PRIMPOL, TRIML2, F11, ACSL1, FAT1, FRG1, CCDC110, FAM149A, FBXO8, PDLIM3, GPM6A, CYP4V2, F11-AS1, LINC01098, SLC25A4, HMGB2, HPGD, LOC339975, TRIML1, ANKRD37, ING2, IRF2, KLKB1, LOC389247, HELT, LINC01060, FAM92A1P2, C4orf47, GALNTL6, MTNR1A, NA NA NA NA NA NA NA NA NA LTS-041 NEK1, AADAT, GALNT7, CLDN22, HPF1, NEIL3, UFSP2, CDKN2AIP, TENM3, LRP2BP, STOX2, CFAP97, SPCS3, TRAPPC11, SLED1, FLJ38576, TLR3, LINC00290, LOC728175, MIR3945HG, VEGFC, CENPU, HAND2-AS1, GLRA3, WWC2, CEP44, CASP3, SNX25, SORBS2, SAP30, LOC90768, HAND2, MFAP3L) 0.333192364904733 121 0.119900205290275 0.866926558415941 5957 0.317263060800986 2 1 1 -6.97245444035428 LTS-041 NA NA NA NA LTS-041 chr4 190945990 190981567 35578 * character(0) NA 0 NA 1.02839266375294 21 1.17190871170558 3 NA NA -5.7644894680467 LTS-041 chr5 140347 185026 44680 * PLEKHG4B 0 1 NA 1.51245727432234 161 0.344232218853631 5 5 0 -5.76562202366006 LTS-041 chr5 185027 733927 548901 * c(PDCD6, MIR4456, LOC100996325, TPPP, EXOC3, EXOC3-AS1, CCDC127, PLEKHG4B, PP7080, LRRC14B, CEP72, AHRR, SDHA, SLC9A3) 0.268035869246346 26 0.128161844796095 1.54722647680048 925 0.484744603889874 5 4 1 -6.73902821997152 LTS-041 chr5 733928 741642 7715 * character(0) NA 0 NA 0.13 1 NA NA NA NA NA LTS-041 chr5 741643 756165 14523 * character(0) 0.272 1 NA 0.505025616448467 44 0.684489937952752 1 1 0 -5.76478244559586 LTS-041 chr5 756166 766786 10621 * character(0) NA 0 NA 2.107 1 NA NA NA NA NA LTS-041 chr5 766787 14826220 14059434 * c(SNORD123, LOC100130744, MIR4277, MIR4278, MIR4458HG, SNHG18, ROPN1L-AS1, LOC100506688, MIR4458, MIR4454, MIR4457, MIR4637, MIR4636, MIR4635, MARCH6, SLC12A7, ADCY2, PAPD7, UBE2QL1, C5orf49, FAM173B, CMBL, CTNND2, C5orf38, IRX2, DAP, ADAMTS16, DNAH5, CCT5, ICE1, LINC01018, LINC01019, LOC285692, SLC6A19, LINC01020, SLC6A18, FLJ33360, LINC01194, LOC442132, MTRR, NDUFS6, IRX4, TAS2R1, FAM105A, NSUN2, ANKH, MRPL36, NA NA NA NA NA NA NA NA NA LTS-041 ANKRD33B, SLC6A3, BRD9, SRD5A1, TERT, TRIO, SDHAP3, LOC728613, LOC729506, FASTKD3, IRX1, ZDHHC11, LPCAT1, CLPTM1L, ROPN1L, MED10, NKD2, OTULIN, SEMA5A, TRIP13) 0.253226597939809 168 0.0855555979259681 1.65871260167735 5284 0.610351172844057 5 4 1 -6.74490956209104 LTS-041 NA NA NA NA LTS-041 chr5 14826221 14871150 44930 * ANKH NA 0 NA 2.504 1 NA NA NA NA NA LTS-041 chr5 14871151 16676103 1804953 * c(FBXL7, MARCH11, MYO10, FAM134B, ANKH, ZNF622) 0.242546117812697 6 0.0752825787726926 1.93306820837713 378 0.497587405476391 6 5 1 -6.76939292297959 LTS-041 chr5 16676104 16681966 5863 * MYO10 0.287 1 NA 1.68242352094692 19 0.366435429477839 5 5 0 -5.7644391836297 LTS-041 chr5 16681967 16711424 29458 * MYO10 0.296798239435891 2 0.0502045814642449 1.98145694491536 79 0.398468857070633 11 8 3 -6.75926069365312 LTS-041 chr5 16711425 16754817 43393 * MYO10 NA 0 NA 1.234 1 NA NA NA NA NA LTS-041 chr5 16754818 23977976 7223159 * c(CDH12, CDH18, BASP1, LOC285696, LOC401177, MYO10, PMCHL1, PRDM9, GUSBP1) 0.386991049673709 3 0.0799770800500577 1.27562080999966 450 0.277205279108555 4 2 2 -6.98964097376253 LTS-041 chr5 23977977 23980037 2061 * character(0) NA 0 NA 1.078 1 NA NA NA NA NA LTS-041 chr5 23980038 39002824 15022787 * c(CDH6, MIR4279, MIR3650, EGFLAM-AS2, CDH9, CDH10, EGFLAM-AS4, GDNF-AS1, SUB1, C1QTNF3, EGFLAM, NADK2, UGT3A1, CAPSL, DNAJC21, TTC23L, UGT3A2, RANBP3L, PDZD2, AMACR, RICTOR, NIPBL, RAI14, GDNF, DROSHA, LOC340107, LOC340113, IL7R, LIFR, NPR3, SLC45A2, RXFP3, ZFR, MTMR12, WDR70, BRIX1, C5orf22, PRLR, RAD1, GOLPH3, LINC01021, NIPBL-AS1, AGXT2, SKP2, SLC1A3, C5orf42, TARS, MIR580, LSP1P3, SPEF2, ADAMTS12, NA NA NA NA NA NA NA NA NA LTS-041 OSMR, LMBRD2, NUP155) 0.383980248665205 89 0.10077079216532 1.0122458794189 6354 0.305945687683532 3 2 1 -7.40887703841365 LTS-041 NA NA NA NA LTS-041 chr5 39002825 39003619 795 * RICTOR NA 0 NA 1.376 1 NA NA NA NA NA LTS-041 chr5 39003620 41935049 2931430 * c(LOC100506548, MROH2B, DAB2, TTC33, RICTOR, FYB, FBXO4, C5orf51, PLCXD3, OXCT1, PRKAA1, PTGER4, RPL37, SNORD72, C6, C7, C9, CARD6) 0.26648555762306 35 0.111716914151632 1.17814768423056 1776 0.344433600749791 4 3 1 -7.1189420262142 LTS-041 chr5 41935050 41935063 14 * FBXO4 0 1 NA 2.684 1 NA NA NA NA NA LTS-041 chr5 41935064 43706050 1770987 * c(CCDC152, LOC100132356, LOC100506639, NNT-AS1, PAIP1, LOC153684, NIM1K, NNT, FBXO4, GHR, HMGCS1, C5orf34, ANXA2R, CCL28, SELENOP, TMEM267, LOC648987, ZNF131) 0.322904705578764 27 0.125073049879931 1.31238051780468 984 0.514822611452014 4 3 1 -6.74909452782283 LTS-041 chr5 43706051 45696278 1990228 * c(MRPS30, FGF10, HCN1) NA 0 NA 1.23001172705453 219 0.287529834928092 4 NA NA -5.91904363227286 LTS-041 chr5 49692017 50034830 342814 * c(EMB, PARP8) NA 0 NA 1.63991696062707 104 0.416054754248148 5 NA NA -5.76448080312651 LTS-041 chr5 50034831 50045967 11137 * PARP8 0.083 1 NA 2.11642955655734 17 0.429444134557549 7 7 0 -5.76441915225546 LTS-041 chr5 50045968 52979144 2933177 * c(FST, LOC257396, ISL1, ITGA1, ITGA2, MOCS2, NDUFS4, PELO, LOC642366, PARP8) 0.121452532810271 7 0.101578962951419 2.10038119631631 974 0.621011821582954 7 7 0 -6.85415794221178 LTS-041 chr5 52979145 53041414 62270 * NDUFS4 NA 0 NA 0.719 1 NA NA NA NA NA LTS-041 chr5 53041415 61772639 8731225 * c(MIR449C, MIR5687, CCNO, PLK2, ESM1, SNX18, RAB3C, ERCC8, SETD9, IL31RA, SLC38A9, MIER3, CDC20B, GAPT, SKIV2L2, PART1, DIMT1, C5orf64, GZMA, GZMK, MCIDAS, ACTBL2, IL6ST, RNF138P1, KIF2A, MAP3K1, FLJ31104, GPX8, IPO11, PDE4D, DHX29, DDX4, ARL15, MIR449A, DEPDC1B, ZSWIM6, SMIM15, GPBP1, MIR449B, MIR581, ANKRD55, ELOVL7, PLPP1, HSPB3, NDUFAF2) 0.345954500421836 106 0.127276847332993 0.578625236461679 3802 0.216289370333832 1 1 0 -6.91394605754232 LTS-041 chr5 61772640 61778924 6285 * IPO11 NA 0 NA 0.86 1 NA NA NA NA NA LTS-041 chr5 61778925 61833152 54228 * IPO11 0.237 1 NA 0.826443453720688 66 0.235243346702584 2 2 0 -5.76464618315414 LTS-041 chr5 61833153 61846117 12965 * IPO11 NA 0 NA 0.534 1 NA NA NA NA NA LTS-041 chr5 61846118 68576030 6729913 * c(LRRC70, FAM159B, LOC100303749, IPO11-LRRC70, CDK7, CWC27, ADAMTS6, SREK1, PPWD1, RNF180, SREK1IP1, HTR1A, TRIM23, MAST4, RGS7BP, CD180, IPO11, PIK3R1, SGTB, ERBIN, NLN, CENPK, SLC30A5, CENPH, TRAPPC13, CCNB1, MRPS36) 0.341099608968157 30 0.113602027665245 0.60960327337428 2933 0.203063474347746 1 1 0 -7.13205779864125 LTS-041 chr5 68576031 68576157 127 * character(0) NA 0 NA 0.5 1 NA NA NA NA NA LTS-041 chr5 68576158 69373289 797132 * c(NA, OCLN, MARVELD2, CCDC125, RAD17, GUSBP3, SMN1, SMN2, TAF9, GTF2H2C, SERF1A) 0 1 NA 0.548629667315208 456 0.197262569235328 1 1 0 -5.80643926161366 LTS-041 chr5 69373290 69717473 344184 * c(SMA4, SMA5, GUSBP3, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.004 1 NA NA NA NA NA LTS-041 chr5 69717474 70307219 589746 * c(GUSBP9, SMA4, SMA5, LOC441081, NAIP, GTF2H2B, SMN1, SMN2, SERF1A) NA 0 NA 0.277016788064592 41 0.218303285340015 0 NA NA -5.91763312932175 LTS-041 chr5 70307220 70307456 237 * c(GUSBP9, NAIP) NA 0 NA 0.554 1 NA NA NA NA NA LTS-041 chr5 70307457 75008816 4701360 * c(GUSBP9, MIR4804, MIR4803, COL4A3BP, NSA2, FCHO2, TMEM171, TMEM174, POC5, ZNF366, MRPS27, ANKRD31, FAM169A, GTF2H2, HEXB, HMGCR, TNPO1, MAP1B, NAIP, GCNT4, POLK, PMCHL2, BDP1, ANKRA2, MCCC2, ARHGEF28, LOC647859, BTF3, ANKDD1B, PTCD2, UTP15, GFM2, ENC1, CARTPT) 0.364558572532946 62 0.0907961684731961 0.610432748094526 2994 0.218476910543692 1 1 0 -7.39260633718991 LTS-041 chr5 75008817 75427470 418654 * c(POC5, SV2C) NA 0 NA 0.432 1 NA NA NA NA NA LTS-041 chr5 75427471 76264932 837462 * c(NCRUPAR, IQGAP2, CRHBP, S100Z, F2R, F2RL1, F2RL2, SV2C) 0.416627692190568 20 0.0555516592200923 0.52274673470813 780 0.662203548629611 2 1 1 -7.08862694982873 LTS-041 chr5 76264933 90671015 14406083 * c(CKMT2-AS1, MIR4280, MTRNR2L2, MIR3607, MIR3660, TMEM161B-AS1, MIR3977, EDIL3, LHFPL2, POLR3G, CETN3, CKMT2, LYSMD3, JMY, ACOT12, COX7C, CRHBP, HAPLN1, VCAN, TMEM167A, MBLAC2, TMEM161B, PAPD4, FAM151B, DHFR, CMYA5, OTP, SSBP2, BHMT2, SERINC5, RNU5E-1, NBPF22P, DMGDH, ANKRD34B, MTX3, MIR9-2, ARSB, MEF2C, CRSP8P, MSH3, AGGF1, WDR41, ARRDC3, RASA1, RASGRF2, RPS23, BHMT, LOC644936, LINC00461, SCARNA18, NA NA NA NA NA NA NA NA NA LTS-041 SNORA47, TBCA, THBS4, ZBED3-AS1, XRCC4, ATG10, ADGRV1, ZCCHC9, ZBED3, SPZ1, AP3B1, PDE8B, CCNH, ATP6AP1L, HOMER1, SCAMP1, ZFYVE16) 0.324545184385669 79 0.0861617987647342 0.602116328181991 6163 0.269315394699046 1 1 0 -7.05749762901833 LTS-041 NA NA NA NA LTS-041 chr5 90671016 90671300 285 * ARRDC3 NA 0 NA 0.737 1 NA NA NA NA NA LTS-041 chr5 90671301 96367979 5696679 * c(ARRDC3-AS1, MIR2277, POU5F2, ARSK, FAM81B, LINC01554, RHOBTB3, ELL2, GLRX, KIAA0825, GPR150, RFESD, LNPEP, NR2F1-AS1, PCSK1, ERAP1, ARRDC3, ERAP2, MIR583, NR2F1, MCTP1, CAST, SPATA9, FAM172A, SLF1, TTC37) 0.346282696811455 46 0.0951594365130854 0.699285538861543 2571 0.204831426805308 2 1 1 -8.88027272491242 LTS-041 chr5 96367980 120021793 23653814 * c(LOC100133050, LOC100289230, LOC100289673, TMED7-TICAM2, STARD4-AS1, LINC01023, NREP-AS1, CDO1, CHD1, EPB41L4A-AS1, AP3S1, SLCO6A1, STARD4, WDR36, CCDC112, DMXL1, DCP2, LIX1, EFNA5, LVRN, FER, PPIP5K2, TNFAIP8, DTWD2, RGMB, APC, HSD17B4, FAM170A, FAM174A, SLCO4C1, TICAM2, KCNN2, MAN2A1, MCC, RGMB-AS1, PAM, TMED7, PRR16, COMMD10, PGGT1B, EPB41L4A-AS2, GIN1, TRIM36, RIOK2, FEM1C, SEMA6A, EPB41L4A, TMEM232, NA NA NA NA NA NA NA NA NA LTS-041 ARL14EPL, FBXL17, YTHDC2, SNORA13, SRP19, LINC00992, ST8SIA4, REEP5, CAMK4, NUDT12, TSSK1B, TSLP, C5orf30, SLC25A46, ATG12, NREP, RAB9BP1, PJA2) 0.321364342810536 118 0.128258301098472 0.743614174199946 6760 0.240624355957631 2 1 1 -9.40128866243905 LTS-041 NA NA NA NA LTS-041 chr5 120021794 123985443 3963650 * c(LOC100505841, ZNF474, CSNK1G3, MGC32805, CEP120, SRFBP1, SNX24, LOX, PRR16, PPIC, ZNF608, SNX2, PRDM6, FTMT, SNCAIP) 0.323786381045546 25 0.0954790203831885 1.03150711917868 1101 0.335015535924148 3 2 1 -6.9439391989261 LTS-041 chr5 123985444 125695835 1710392 * c(ZNF608, GRAMD3) NA 0 NA 1.00392441668623 56 0.209829946607977 3 NA NA -5.96989472631374 LTS-041 chr5 125695836 125695874 39 * GRAMD3 0.241 1 NA 2.561 1 NA NA NA NA NA LTS-041 chr5 125695875 135587654 9891780 * c(VTRNA2-1, KIAA1024L, MIR1289-2, MIR3936, MIR3661, MIR4633, MIR4461, MIR4460, C5orf66, RAD50, SEC24A, KIF3A, MARCH3, LEAP2, PRRC1, SOWAHA, SHROOM1, C5orf24, DCANP1, CSF2, SLC25A48, ADAMTS19, FBN2, FSTL4, SEPT8, ACSL6, JADE2, FBXL21, GDF9, UQCRQ, AFF4, SLC27A6, HINT1, HSPA4, CHSY3, C5orf66-AS2, LOC340074, CATSPER3, IL3, IL4, IL5, IL9, IL13, IRF1, TEX43, LOC389332, LECT2, LMNB1, C5orf63, SMAD5, C5orf56, NA NA NA NA NA NA NA NA NA LTS-041 NEUROG1, TIFAB, ALDH7A1, ISOC1, SAR1B, CDKL3, RAPGEF6, PHAX, PITX1, ZCCHC10, PPP2CA, LOC553103, C5orf15, CDC42SE2, TRPC7, CTXN3, LINC01184, CCNI2, SKP1, SLC12A2, SLC22A4, SLC22A5, GRAMD3, TCF7, TGFBI, MEIKIN, UBE2B, VDAC1, TXNDC15, CAMLG, PCBD2, MEGF10, PDLIM4, P4HA2, LYRM7, CDKN2AIPNL, CXCL14, H2AFY, SMAD5-AS1, FNIP1, DDX46) 0.241747392898471 158 0.133199318366451 1.15202416380152 7569 0.451642817889154 3 3 0 -7.07600756917399 LTS-041 NA NA NA NA LTS-041 chr5 135587655 136953307 1365653 * c(KLHL3, TRPC7, SPOCK1) 0 1 NA 0.747220725126293 173 0.204665353302208 2 2 0 -6.03712408671977 LTS-041 chr5 136953308 136954861 1554 * KLHL3 0.461 1 NA 0.891462852888855 35 0.0965543083128946 2 2 0 -5.76472015206771 LTS-041 chr5 136954862 140553581 3598720 * c(SRA1, MIR874, LINC01024, KIF20A, APBB3, BRD8, HNRNPA0, SLC35A4, CTNNA1, ZMAT2, HBEGF, EGR1, SPATA24, DNAJC18, ETF1, HARS2, LRRTM2, PCDHB5, KLHL3, GFRA3, SNORD63, SNORA74A, PKD2L2, PCDHB1, HARS, HSPA9, TMEM173, IK, DND1, PROB1, ANKHD1-EIF4EBP3, NDUFA2, NPY6R, IGIP, MZB1, PAIP2, FAM13B, FAM53C, REEP2, CXXC5, KDM3B, PFDN1, PCDHB17P, WDR55, ANKHD1, TMCO6, PCDHB7, PCDHB6, PCDHB4, PCDHB3, PCDHB2, PCDHAC2, NA NA NA NA NA NA NA NA NA LTS-041 PCDHAC1, PCDHA13, PCDHA12, PCDHA11, PCDHA10, PCDHA8, PCDHA7, PCDHA6, PCDHA5, PCDHA4, PCDHA3, PCDHA2, PCDHA1, VTRNA1-3, VTRNA1-2, VTRNA1-1, PURA, ECSCR, SIL1, SNHG4, UBE2D2, WNT8A, SLC4A9, NME5, PSD2, CYSTM1, EIF4EBP3, CDC23, CD14, MYOT, NRG2, PCDHA9, MATR3, CDC25C, SLC23A1) 0.370867984829825 115 0.108022964194136 0.737783723313541 5551 0.20568547667121 2 1 1 -7.55331924242354 LTS-041 NA NA NA NA LTS-041 chr5 140553582 140553623 42 * PCDHB7 NA 0 NA 0.49 1 NA NA NA NA NA LTS-041 chr5 140553624 140558897 5274 * c(PCDHB8, PCDHB7) NA 0 NA 0.382302341426238 61 0.170307985238701 0 NA NA -5.76781113024912 LTS-041 chr5 140558898 140559821 924 * PCDHB8 NA 0 NA 1.513 1 NA NA NA NA NA LTS-041 chr5 140559822 148732970 8173149 * c(GNPDA1, LOC100505658, MIR5197, ARHGAP26-AS1, PPP2R2B-IT1, TCERG1, SPINK5, SCGB3A2, AFAP1L1, GRPEL2, GPR151, SPINK13, JAKMIP2-AS1, PRELID2, SH3RF2, PLAC8L1, ADRB2, DIAPH1, DPYSL3, STK32A, FGF1, ABLIM3, ARHGAP26, PCDHGA12, RELL2, NR3C1, HTR4, C5orf46, SPINK6, SPINK14, PCDH1, PCDHGC3, PCDH12, LARS, RBM27, POU4F3, PCDHB18P, PPP2R2B, PCDHGC5, PCDHGC4, PCDHGB7, PCDHGB6, PCDHGB5, PCDHGB3, PCDHGB2, PCDHGB1, PCDHGA11, NA NA NA NA NA NA NA NA NA LTS-041 PCDHGA10, PCDHGA9, PCDHGA7, PCDHGA6, PCDHGA5, PCDHGA4, PCDHGA3, PCDHGA2, PCDHGA1, PCDHGB8P, PCDHB15, PCDHB14, PCDHB13, PCDHB12, PCDHB11, PCDHB10, PCDHB8, KCTD16, PCDHB16, HMHB1, GRXCR2, SPINK9, ARAP3, SPINK1, TAF7, LOC729080, SH3TC2, NDFIP1, FBXO38, YIPF5, SPRY4, SLC25A2, PCDHB19P, SPINK7, PCDHGB4, HDAC3, FCHSD1, RNF14, PCDHGA8, KIAA0141, JAKMIP2) 0.342126453976647 128 0.130483581333206 0.741888526506147 6450 0.905268727819535 2 1 1 -6.92013925793647 LTS-041 NA NA NA NA LTS-041 chr5 148732971 148733137 167 * GRPEL2 NA 0 NA 1.152 1 NA NA NA NA NA LTS-041 chr5 148733138 154395458 5662321 * c(MIR3141, LOC100652758, G3BP1, TNIP1, CDX1, FAXDC2, FAM114A2, SYNPO, PPARGC1B, GRPEL2, ZNF300P1, CSF1R, CSNK1A1, SLC36A2, SLC26A2, SLC36A1, FAT2, HMGXB3, LARP1, GEMIN5, CCDC69, IL17B, GLRA1, GM2A, SLC36A3, KIF4B, GPX3, GRIA1, MRPL22, ANXA6, NDST1, ARSI, IRGM, SAP30L-AS1, ARHGEF37, MIR143, MFAP3, ATOX1, DCTN4, PDE6A, PDGFRB, GALNT10, RBM22, NMUR2, RPS14, SLC6A7, SPARC, TCOF1, CARMN, PCYOX1L, SAP30L, NA NA NA NA NA NA NA NA NA LTS-041 CAMK2A, TIGD6, SMIM3, ZNF300, MYOZ3, CNOT8, HAND1, CD74) 0.302119227677289 151 0.122395898732311 0.890924196137208 6281 0.510278968864548 2 1 1 -7.08773779378942 LTS-041 NA NA NA NA LTS-041 chr5 154395459 154395515 57 * KIF4B NA 0 NA 0.659 1 NA NA NA NA NA LTS-041 chr5 154395516 156670771 2275256 * c(PPP1R2P3, FAM71B, HAVCR1, KIF4B, ITK, SGCD, HAVCR2, TIMD4, MED7) 0.28755653031973 15 0.0709877923777509 0.755219818705703 639 0.297103305641399 1 1 0 -7.65215040817171 LTS-041 chr5 156670772 162932635 6261864 * c(C5orf52, MIR3142, SLU7, SOX30, PWWP2A, C1QTNF2, LSM11, NUDCD2, UBLCP1, ADRA1B, RNF145, EBF1, FABP6, ATP10B, GABRA1, GABRA6, GABRB2, GABRG2, CYFIP2, MAT2B, LOC285626, LOC285627, LOC285629, HMMR, NIPAL4, IL12B, ITK, MIR146A, FNDC9, THG1L, ZBED8, TTC1, CCNJL, ADAM19, CCNG1, PTTG1, CLINT1) 0.29166435031558 45 0.124849901801315 0.836208802249533 2922 0.256776783746736 2 2 0 -7.10015129346461 LTS-041 chr5 162932636 169020563 6087928 * c(MIR103B1, WWC1, MAT2B, FBLL1, MIR103A1, MIR218-2, SPDL1, TENM2, RARS, SLIT3, MIR585, PANK3) 0.331639938105187 24 0.145797656091376 0.934915932590377 1167 0.324884530569049 2 1 1 -7.18645257646457 LTS-041 chr5 169020564 169675574 655011 * c(FAM196B, MIR378E, C5orf58, DOCK2, FOXI1, LCP2, SPDL1) 0.237626488903886 12 0.187547004209288 0.782956378544059 570 0.339497592610975 2 2 0 -6.7877495239848 LTS-041 chr5 169675575 169675615 41 * c(C5orf58, LCP2) NA 0 NA 0.827 1 NA NA NA NA NA LTS-041 chr5 169675616 180424432 10748817 * c(LOC100268168, MIR1229, MIR4281, MIR3912, LOC100507387, MIR4634, HEIH, RGS14, CPLX2, BTNL3, LMAN2, MGAT4B, B4GALT7, GPRIN1, ZNF354B, CLTB, C5orf47, C5orf58, OR2Y1, NKX2-5, CREBRF, DBN1, DRD1, DUSP1, HIGD2A, FAM153B, LOC202181, F12, FGFR4, RNF44, TBC1D9B, N4BP3, FAF2, FLT4, FBXW11, ZNF346, EIF4E1B, RASGEF1C, GABRP, LINC01366, TSPAN17, PRELID1, EFCAB9, SH3PXD2B, LOC285593, FAM153A, ARL10, ZNF454, C5orf60, NA NA NA NA NA NA NA NA NA LTS-041 GRK6, GRM6, TLX3, KCNIP1, ZNF354C, HK3, HNRNPAB, HNRNPH1, HRH2, PRR7-AS1, PFN3, ZNF879, SIMC1, KCNMB1, LCP2, LTC4S, MGAT1, FLJ16171, MIR340, MSX2, NPM1, RPL26L1, C5orf45, DDX41, NOP16, HMP19, UIMC1, RAB24, NEURL1B, FAM193B, TMED9, CDHR2, NHP2, RNF130, MAPK9, PROP1, KIAA1191, ERGIC1, CLK4, CNOT6, LOC643201, NSD1, ZFP62, GMCL1P1, CBY3, RMND5B, RANBP17, FAM153C, SLC34A1, BNIP1, SNCB, SNORA74B, STK10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ZNF354A, LOC728554, AACSP1, LINC00847, BTNL8, DOK3, ZFP2, RUFY1, CPEB4, PRR7, CANX, MXD3, THOC3, PHYKPL, STC2, FGF18, SQSTM1, ATP6V0E1, UNC5A, BOD1, COL23A1, UBTD2, SCGB3A1, PDLIM7, SFXN1, ADAMTS2, MAML1, GFPT2) 0.312954250164596 237 0.123527741461897 0.870752490407541 10100 0.283747476254459 2 1 1 -7.05820884047088 LTS-041 NA NA NA NA LTS-041 chr5 180424433 180687212 262780 * c(MIR4638, RACK1, BTNL3, BTNL9, OR2V1, OR2V2, SNORD95, SNORD96A, TRIM7, TRIM52, TRIM41) 0.320811346435724 23 0.103649016286095 0.714834818904309 545 0.282750605429025 1 1 0 -6.92721971595691 LTS-041 chr5 180687213 180688111 899 * TRIM52 NA 0 NA 0.824714697821763 21 0.278047563591281 2 NA NA -5.76441354822907 LTS-041 chr6 203389 203397 9 * character(0) 0.4 1 NA 2.737 1 NA NA NA NA NA LTS-041 chr6 203398 3105756 2902359 * c(GMDS-AS1, MIR4645, HUS1B, LINC01600, SERPINB1, SERPINB9P1, FOXF2, FOXC1, GMDS, LINC01622, MYLK4, IRF4, LINC01011, HTATSF1P2, NQO2, SERPINB6, SERPINB9, EXOC2, WRNIP1, DUSP22, RIPK1, FOXQ1) 0.386373944664272 42 0.0764838690833901 1.09324805114595 1246 0.309274505427983 3 2 1 -6.77857976612871 LTS-041 chr6 3105757 8102879 4997123 * c(SCARNA27, MIR3691, LOC100507194, BLOC1S5-TXNDC5, EEF1E1-BLOC1S5, ECI2, FARS2, RPP40, SNRNP48, DSP, PIP5K1P1, F13A1, PXDC1, FAM217A, FAM50B, LY86-AS1, CAGE1, TUBB2B, PSMG4, C6orf201, NRN1, LYRM4, RREB1, SLC22A23, BLOC1S5, PPP1R3G, BMP6, BPHL, SSR1, TUBB2A, TXNDC5, RIOK1, RIPK1, PRPF4B, CDYL, LY86, EEF1E1) 0.335812572629316 48 0.149576986273608 0.878962303284131 2789 0.217623593918725 2 1 1 -6.92765962698616 LTS-041 chr6 8102880 8411806 308927 * character(0) NA 0 NA 1.459 1 NA NA NA NA NA LTS-041 chr6 8411807 11138234 2726428 * c(TFAP2A-AS1, LOC100506207, ELOVL2-AS1, MIR5689, SMIM13, SYCP2L, LINC00518, GCNT2, C6orf52, ERVFRD-1, MAK, SLC35B3, TMEM14C, ELOVL2, PAK1IP1, TFAP2A, HULC, TMEM14B, GCM2) 0.373679372244207 21 0.13843177793721 1.13863978151083 1265 0.350860007307506 3 2 1 -6.74728526771504 LTS-041 chr6 11138235 16328661 5190427 * c(TMEM170B, LOC100130357, RANBP9, MIR4639, EDN1, RNF182, PHACTR1, SMIM13, SIRT5, GMPR, MYLIP, HIVEP1, JARID2, NEDD9, TBC1D7, NOL7, GFOD1, ATXN1, MCUR1, DTNBP1, ADTRP, CD83) 0.388061834538709 47 0.0889261977155664 1.42156945840958 2262 0.398208058757442 4 2 2 -6.76620123698524 LTS-041 chr6 16328662 18205886 1877225 * c(CAP2, KDM1B, RBM24, NHLRC1, STMND1, FAM8A1, ATXN1, KIF13A, TPMT, NUP153) 0.420271229225358 18 0.0450526561932297 1.21931983390091 983 0.32033824786806 4 2 2 -7.07989096578695 LTS-041 chr6 18205887 18207652 1766 * KDM1B NA 0 NA 1.788 1 NA NA NA NA NA LTS-041 chr6 18207653 22147361 3939709 * c(MBOAT1, E2F3, KDM1B, RNF144B, ID4, CASC15, CDKAL1, SOX4, MIR548A1, NBAT1, DEK) 0.377826446489387 12 0.140655930941752 1.4987150609602 732 0.38711666358716 5 3 2 -6.83956707369871 LTS-041 chr6 22147362 27224089 5076728 * c(LINC00240, LOC100270746, MIR3143, SLC17A4, SLC17A2, PRSS16, BTN3A3, BTN2A2, HMGN4, TRIM38, SCGN, SLC17A3, BTN3A2, BTN3A1, BTN2A1, NRSN1, HDGFL1, HIST1H2AA, HIST1H2BA, GPLD1, LOC285819, ABT1, HIST1H1C, HIST1H1D, HIST1H1E, HIST1H1T, HIST1H2AE, HIST1H2AD, HIST1H2BD, HIST1H2BB, HIST1H1A, HFE, KAAG1, GUSBP2, HIST1H2APS1, CASC15, HCG11, GMNN, DCDC2, TDP2, BTN2A3P, CARMIL1, ACOT13, PRL, MRS2, SLC17A1, BTN1A1, NA NA NA NA NA NA NA NA NA LTS-041 NBAT1, ALDH5A1, ZNF322, C6orf62, HIST1H4I, HIST1H2AC, HIST1H2AB, HIST1H2BG, HIST1H2BF, HIST1H2BE, HIST1H2BH, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3G, HIST1H3B, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4G, CMAHP, HIST1H2AH, HIST1H2BK, HIST1H3F, HIST1H2AG, HIST1H2BJ, FAM65B, KIAA0319) 0.390011272545407 74 0.0987115035869298 1.18012233935072 3448 0.426367554027145 3 2 1 -6.84177526448904 LTS-041 NA NA NA NA LTS-041 chr6 27224090 27435784 211695 * c(PRSS16, ZNF391, VN1R10P, ZNF184, ZNF204P, POM121L2) 0.394012044750727 4 0.101302764029418 0.848511086903087 267 0.183157691149173 2 1 1 -6.73321558941875 LTS-041 chr6 27435785 27439922 4138 * ZNF184 NA 0 NA 1.438 1 NA NA NA NA NA LTS-041 chr6 27439923 29394584 1954662 * c(ZSCAN16-AS1, LOC100131289, LINC01012, ZSCAN12P1, ZSCAN23, NKAPL, TOB2P1, GPX6, OR2B6, HIST1H1B, ZKSCAN4, ZSCAN31, ZNF192P1, ZNF165, ZNF184, ZSCAN26, ZKSCAN8, ZSCAN9, ZKSCAN3, ZSCAN16, OR2B2, HIST1H2AK, HIST1H2AJ, HIST1H2AL, HIST1H2AM, HIST1H2BL, HIST1H2BN, HIST1H2BM, HIST1H2BO, HIST1H3I, HIST1H3J, HIST1H3H, HIST1H4K, HIST1H4J, HIST1H4L, PGBD1, ZSCAN12) 0.115340980557549 7 0.173048025263564 1.13880119090049 1759 0.309574367712401 3 3 0 -6.76385315439076 LTS-041 chr6 29394585 29798140 403556 * character(0) 0.37782953139783 37 0.121969079919693 0.84469392224871 641 0.299237736226209 2 1 1 -6.74260054704864 LTS-041 chr6 29798141 29856550 58410 * character(0) 0.186 1 NA 1.01239419677954 20 4.58803833324967 3 3 0 -5.76442277153173 LTS-041 chr6 29856551 30080231 223681 * character(0) 0.349280475336866 63 0.123976865522741 0.804941631745669 345 0.267836059218057 2 1 1 -6.81155498203642 LTS-041 chr6 30080232 30104783 24552 * character(0) 0.29 1 NA 0.790274388023118 17 0.56649469781019 2 2 0 -5.76460280470451 LTS-041 chr6 30104784 30113948 9165 * character(0) 0.226 1 NA 0.889207639066855 16 0.394570351775194 2 2 0 -5.76450994589682 LTS-041 chr6 30113949 30114833 885 * character(0) NA 0 NA 0.882 1 NA NA NA NA NA LTS-041 chr6 30114834 30152789 37956 * character(0) 0.218330901275583 19 0.0838887107391316 0.988587756996186 235 0.7312074321918 6 5 1 -6.75414690786589 LTS-041 chr6 30152790 30154199 1410 * character(0) 0.398 1 NA 0.968234841679455 31 0.27210762418533 3 3 0 -5.76460823238527 LTS-041 chr6 30154200 32605266 2451067 * c(HLA-DQA1, HLA-DRB5) 0.348081318113214 274 0.0984633174963273 0.923784759464561 7458 0.632393505245264 3 2 1 -6.86733837341873 LTS-041 chr6 32605267 32605271 5 * HLA-DQA1 NA 0 NA 0.5 1 NA NA NA NA NA LTS-041 chr6 32605272 32627536 22265 * HLA-DQA1 0.285103914303892 13 0.160271444423004 0.379169769868878 102 0.642306417056201 1 1 0 -6.74103564348402 LTS-041 chr6 32627537 32632561 5025 * character(0) 0.133 1 NA 0.548008266059102 55 0.344712282310563 1 1 0 -5.76450089579046 LTS-041 chr6 32632562 33054760 422199 * character(0) 0.353017505386079 91 0.0969852738591965 1.16495424187911 974 7.87550912091777 6 4 2 -6.73408656517028 LTS-041 chr6 33054761 33739663 684903 * c(IP6K3, LEMD2, ITPR3, LINC00336, GGNBP1, BAK1, UQCC2) 0.372482312384664 69 0.103292931353114 0.933494903769856 2201 0.27178336954793 2 1 1 -6.81423129071864 LTS-041 chr6 33739664 34360510 620847 * c(MIR1275, LINC01016, RPS10-NUDT3, NUDT3, C6orf1, LEMD2, GRM4, HMGA1, MLN) 0.302760123371579 6 0.150714299255247 1.32253029804544 343 2.19403158565712 4 3 1 -6.7335905326653 LTS-041 chr6 34360511 34385161 24651 * RPS10-NUDT3 NA 0 NA 1.003 1 NA NA NA NA NA LTS-041 chr6 34385162 39832907 5447746 * c(LOC100131047, MIR3925, RPS10-NUDT3, MIR4462, MIR5690, CDKN1A, STK38, BTBD9, SLC26A8, CLPS, MAPK14, CCDC167, DNAH8, FANCE, KIF6, TMEM217, FGD2, PI16, C6orf89, ARMC12, KCTD20, PXT1, LHFPL5, SCUBE3, FKBP5, CMTR1, ANKS1A, DAAM2, MTCH1, SPDEF, MDGA1, BRPF3, GLO1, GLP1R, LOC285847, PNPLA1, PACSIN1, CLPSL1, CLPSL2, C6orf222, RAB44, RPL10A, DEF6, ETV7, PPIL1, PIM1, PPARD, UHRF1BP1, TBC1D22B, SAYSD1, MAPK13, NA NA NA NA NA NA NA NA NA LTS-041 CPNE5, ZFAND3, RPS10, SRSF3, C6orf106, SNRPC, SRPK1, TAF11, TCP11, TEAD3, TULP1, ZNF76, KCNK16, KCNK5, KCNK17, RNF8) 0.377233912365134 139 0.111248628885212 1.03917452113826 6030 0.343651600327049 3 2 1 -6.84080639312026 LTS-041 NA NA NA NA LTS-041 chr6 39832908 39835231 2324 * DAAM2 NA 0 NA 0.754 1 NA NA NA NA NA LTS-041 chr6 39835232 39869066 33835 * DAAM2 0.361108204147171 6 0.0736353628813403 0.836993330621309 98 0.21876345319456 3 2 1 -6.76779759801674 LTS-041 chr6 39869067 39869952 886 * DAAM2 0.243 1 NA 0.817714709194116 9 0.266570711902948 2 2 0 -5.76441715704358 LTS-041 chr6 39869953 40359342 489390 * c(DAAM2, LINC00951, MOCS1, TDRG1) 0.282033370452904 3 0.0205993527406405 0.75147386850684 151 0.173504896585292 1 1 0 -7.36890316564818 LTS-041 chr6 40359343 40359359 17 * character(0) 0 1 NA 4.079 1 NA NA NA NA NA LTS-041 chr6 40359360 41200215 840856 * c(APOBEC2, ADCY10P1, OARD1, TSPO2, UNC5CL, TREML4, TREML1, TREML3P, NFYA, TREM2, LRFN2, TREML2) 0.356418728588819 4 0.074227128912997 1.02490184315265 561 0.264214870736411 3 2 1 -6.78255890190524 LTS-041 chr6 41200216 41204110 3895 * TREML4 NA 0 NA 1.316 1 NA NA NA NA NA LTS-041 chr6 41204111 42326921 1122811 * c(TOMM6, MIR4641, FRS3, FOXP4, TAF8, TREML5P, USP49, TREML4, GUCA1A, GUCA1B, PRICKLE4, MDFI, PGC, TREM1, MRPS10, TRERF1, C6orf132, BYSL, TFEB, CCND3, NCR2, MED20) 0.313798128558823 30 0.119427874641473 1.33592626247822 1517 0.338655709854533 4 3 1 -6.73785720280648 LTS-041 chr6 42326922 42531728 204807 * TRERF1 NA 0 NA 1.498 1 NA NA NA NA NA LTS-041 chr6 42531729 44900573 2368845 * c(LINC01512, MIR4647, MIR4642, DNPH1, CNPY3, SLC22A7, CAPN11, KLHDC3, PTCRA, TCTE1, SLC29A1, SPATS1, C6orf223, RSPH9, LRRC73, CUL9, UBR2, GLTSCR1L, ZNF318, YIPF3, GNMT, RPL7L1, HSP90AB1, SLC35B2, CRIP3, MEA1, C6orf226, TMEM151B, ATP6V0CP3, NFKBIE, MRPL2, PEX6, POLH, GTPBP2, MRPS18A, PPP2R5D, TMEM63B, AARS2, XPO5, PTK7, PRPH2, MRPL14, DLK2, SRF, TBCC, VEGFA, TTBK1, SUPT3H, RRP36, ABCC10, KLC4, TJAP1, NA NA NA NA NA NA NA NA NA LTS-041 POLR1C, MAD2L1BP, CUL7, CDC5L) 0.258746031240088 46 0.101092928502624 1.63881964274021 4614 0.405854717340509 5 4 1 -6.73353277445891 LTS-041 NA NA NA NA LTS-041 chr6 44900574 44921009 20436 * SUPT3H NA 0 NA 1.19 1 NA NA NA NA NA LTS-041 chr6 44921010 45518835 597826 * c(MIR586, SUPT3H, RUNX2) 0.425261712205898 3 0.0819898367685492 1.09196532416794 194 0.37735057059385 4 2 2 -6.94684101347703 LTS-041 chr6 45518836 45869516 350681 * CLIC5 NA 0 NA 0.605 1 NA NA NA NA NA LTS-041 chr6 45869517 48036429 2166913 * c(ANKRD66, RCAN2, OPN5, ADGRF4, ADGRF5, TDRD6, ADGRF2, ENPP4, CD2AP, ADGRF1, TNFRSF21, MEP1A, PTCHD4, CYP39A1, CLIC5, ENPP5, PLA2G7, SLC25A27) 0.335877758697847 38 0.121783045789719 0.753128406742779 1708 0.236868677757182 2 1 1 -7.14514959657138 LTS-041 chr6 49398017 49519816 121800 * c(C6orf141, GLYATL3, MUT, CENPQ) 0.251346469065475 10 0.0821721769619539 1.12885786062851 237 0.365415634191014 5 4 1 -6.81181455833661 LTS-041 chr6 49519817 49572869 53053 * character(0) NA 0 NA 1.464 1 NA NA NA NA NA LTS-041 chr6 49572870 50686922 1114053 * c(CRISP3, CRISP1, DEFB110, DEFB112, DEFB113, DEFB114, PGK2, RHAG, CRISP2, TFAP2D) 0.036606120371411 3 0.116624754376304 1.51973447050039 340 0.50852904078346 5 5 0 -6.9164800547677 LTS-041 chr6 50686923 50696539 9617 * TFAP2D NA 0 NA 1.163 1 NA NA NA NA NA LTS-041 chr6 50696540 55214913 4518374 * c(MIR5685, MLIP-IT1, IL17F, EFHC1, GSTA5, FAM83B, ICK, FBXO9, TINAG, GCLC, TMEM14A, GSTA1, GSTA2, GSTA3, GSTA4, HCRTR2, IL17A, GFRAL, TRAM2-AS1, KLHL31, MIR206, MCM3, MIR133B, PKHD1, LRRC1, ELOVL5, RPS16P5, TFAP2B, LOC730101, GSTA7P, TFAP2D, GCM1, PAQR8, MLIP, TRAM2) 0.193141460995018 56 0.100012322292754 1.23542924396765 2534 0.500048416946575 3 3 0 -6.99352939438857 LTS-041 chr6 55214914 55214919 6 * GFRAL NA 0 NA 1.651 1 NA NA NA NA NA LTS-041 chr6 55214920 57512678 2297759 * c(BEND6, ZNF451, GFRAL, RAB23, HMGCLL1, PRIM2, KIAA1586, BMP5, DST, COL21A1, BAG2) 0.33026147078162 68 0.0920342663883406 1.42392678539883 1981 0.352172294580342 4 3 1 -6.79019462712101 LTS-041 chr6 57512679 58445634 932956 * c(GUSBP4, PRIM2) NA 0 NA 1.42955966518861 19 0.248922179530046 4 NA NA -5.78307667260281 LTS-041 chr6 62390154 62407067 16914 * KHDRBS2 0.389 1 NA 1.25653761748485 23 0.330152444127915 4 4 0 -5.76505885728438 LTS-041 chr6 62407068 74537896 12130829 * c(KHDC1L, MIR4282, KCNQ5-AS1, MB21D1, COL9A1, COL19A1, B3GAT2, SDHAF4, CD109, KHDC3L, EEF1A1, KHDRBS2, RIMS1, PHF3, MTO1, SLC17A5, DPPA5, EYS, NA, MIR30A, MIR30C2, LOC441155, OOEP, SLC25A51P1, LGSN, DDX43, LMBRD1, KCNQ5, FAM135A, ADGRB3, SMAP1, PTP4A1, OGFRL1, LINC00472, KHDC1) 0.29739101869715 56 0.146564125409811 1.12284403941047 3494 0.34981133573035 3 2 1 -6.87652265224863 LTS-041 chr6 75794065 83874556 8080492 * c(HMGN3-AS1, LOC100506804, COL12A1, COX7A2, IRAK1BP1, LCA5, DOPEY1, IBTK, SENP6, FILIP1, HTR1B, IMPG1, MYO6, PHIP, FAM46A, TMEM30A, BCKDHB, RNY4, ELOVL4, TPBG, TTK, SH3BGRL2, LINC01621, UBE3D, HMGN3) 0.309682831558689 27 0.133668211939828 1.23625846982819 2858 0.45403357108736 4 3 1 -6.9586028148553 LTS-041 chr6 83874557 83874639 83 * c(DOPEY1, PGM3) NA 0 NA 0.832 1 NA NA NA NA NA LTS-041 chr6 83874640 88311682 4437043 * c(SYNCRIP, SLC35A1, CGA, MRAP2, RWDD2A, RIPPLY2, CFAP206, PRSS35, C6orf163, CEP162, DOPEY1, ZNF292, ORC3, SNORD50A, HTR1E, GJB7, SNHG5, ME1, NT5E, CYB5R4, PGM3, RARS2, SMIM8, SNX14, LINC01590, SNORD50B, TBX18, SNAP91) 0.306508771760274 26 0.0839784221369715 1.14624049465551 2098 0.299059816954111 3 2 1 -7.05756640692767 LTS-041 chr6 88311683 88313197 1515 * ORC3 NA 0 NA 0.915 1 NA NA NA NA NA LTS-041 chr6 88313198 92231377 3918180 * c(MIR4464, PNRC1, CNR1, PM20D2, SRSF12, ANKRD6, MDN1, ORC3, GABRR1, GABRR2, UBE2J1, AKIRIN2, LYRM2, RRAGD, BACH2, MAP3K7, SPACA1, GJA10, RNGTT, CASP8AP2) 0.359947975694819 44 0.108082995574451 1.00312155134071 2474 0.267469682533346 3 2 1 -7.02509551313388 LTS-041 chr6 92231378 105176030 12944653 * c(TSTD3, MIR2113, MIR4643, FUT9, ASCC3, KLHL32, EPHA7, UFL1, MMS22L, PNISR, FBXL4, GRIK2, NDUFAF4, COQ3, POU3F2, HACE1, PRDM13, TSG1, SIM1, MCHR2-AS1, MANEA, GPR63, MCHR2, FAXC, USP45, CCNC, FHL5) 0.182546613147814 53 0.124599352119588 0.763142441639889 2417 0.266483255317005 2 2 0 -7.66423384604038 LTS-041 chr6 105176031 111321054 6145024 * c(LIN28B-AS1, LOC100422737, LOC100996634, BVES, SEC63, GTF3C6, BVES-AS1, AIM1, CCDC162P, AK9, FOXO3, CDK19, LACE1, SCML4, AMD1, SESN1, GPR6, CEP57L1, PPIL6, OSTM1, LINC00222, LIN28B, C6orf203, CDC40, SOBP, QRSL1, PREP, PDSS2, HACE1, BEND3, PRDM1, POPDC3, MICAL1, SMPD2, NR2E1, METTL24, ARMC2, RPF2, RTN4IP1, DDO, SLC22A16, SNX3, CD164, WASF1, ATG5, ZBTB24, FIG4) 0.288412152573444 77 0.143282836696745 0.438701966172223 4363 0.145511232777575 1 1 0 -11.9195704106308 LTS-041 chr6 111321055 111329281 8227 * RPF2 NA 0 NA 0.924 1 NA NA NA NA NA LTS-041 chr6 111329282 125252867 13923586 * c(TRAPPC3L, LOC100287632, TRDN, TRAF3IP2, SMPDL3A, NUS1, SLC16A10, COL10A1, CLVS2, NKAIN2, FABP7, NT5DC1, FAM26D, ZUFSP, FAM162B, TBC1D32, HS3ST5, GPRC6A, RFX6, SLC35F1, TSPYL4, BRD7P3, FRK, VGLL2, FYN, FAM26E, MCM9, ASF1A, GJA1, LINC01268, FLJ34503, DCBLD1, LOC285762, DSE, HDAC2, HSF2, RSPH4A, KPNA5, CEP85L, LAMA4, MARCKS, MAN1A1, FAM26F, GSTM2P1, RFPL4B, TUBE1, RWDD1, PLN, PKIB, GOPC, SERINC1, NA NA NA NA NA NA NA NA NA LTS-041 REV3L, ROS1, FAM229B, TRAF3IP2-AS1, MIR548B, TSPYL1, TPI1P3, RNF217-AS1, FAM184A, RPF2, WISP3, MFSD4B) 0.29370264039525 94 0.135397326619924 0.873062996457481 5570 0.291754609401118 2 1 1 -7.1577541493723 LTS-041 NA NA NA NA LTS-041 chr6 125252868 125252928 61 * RNF217-AS1 0 1 NA 2.533 1 NA NA NA NA NA LTS-041 chr6 125252929 128176319 2923391 * c(MIR5695, NCOA7, HINT3, RNF217, HEY2, C6orf58, CENPW, SOGA3, THEMIS, HDDC2, ECHDC1, TRMT11, LOC643623, TPD52L1, RNF217-AS1, RNF146, RSPO3, KIAA0408) 0.318002322791794 24 0.136735059327428 0.957487519586364 1365 0.30562157181577 3 2 1 -7.16588511295038 LTS-041 chr6 128176320 128221933 45614 * THEMIS NA 0 NA 1.217 1 NA NA NA NA NA LTS-041 chr6 128221934 133092151 4870218 * c(SMLR1, LINC01013, TMEM200A, SLC18B1, TAAR1, CTGF, SAMD3, EPB41L2, TMEM244, MOXD1, TAAR6, ARG1, THEMIS, LAMA2, ENPP1, ENPP3, VNN3, PTPRK, CTAGE9, OR2A4, TAAR8, STX7, L3MBTL3, VNN2, VNN1, TAAR5, TAAR2, TAAR3, ARHGAP18, MED23, AKAP7) 0.37432114515641 34 0.0990651174957983 1.10993664361982 2600 0.368560582771432 3 2 1 -6.73810457311406 LTS-041 chr6 133092152 134639194 1547043 * c(SLC18B1, LINC01312, SLC2A12, EYA4, LINC00326, HMGA1P7, SNORA33, RPS12, SGK1, TCF21, TBPL1) 0.411205437866602 23 0.0659556684268188 1.2744411778835 676 0.303932425806293 4 2 2 -6.82514049937481 LTS-041 chr6 135238521 136599393 1360873 * c(LINC00271, MIR3662, HBS1L, MTFR2, PDE7B, MYB, AHI1, ALDH8A1, BCLAF1) 0.427628841368199 6 0.121710585680403 0.850744265145256 1035 0.535328373663931 2 1 1 -6.78078059145476 LTS-041 chr6 136599394 136663948 64555 * c(MAP7, BCLAF1) 0.096 1 NA 1.14768921497598 21 0.462482421802376 3 3 0 -5.76467589020448 LTS-041 chr6 136663949 138628444 1964496 * c(LOC100130476, NHEG1, IL22RA2, OLIG3, SLC35D3, IFNGR1, MAP3K5, PEX7, IL20RA, ARFGEF3, PBOV1, PERP, TNFAIP3, MAP7) 0.0895551944606411 13 0.0693627587952808 0.821393941321355 1015 0.246239480900444 2 2 0 -7.82376279461262 LTS-041 chr6 138628445 143508790 4880346 * c(LOC100132735, MIR3145, MIR3668, GVQW2, LINC01277, MIR4465, CITED2, LOC153910, TXLNB, HEBP2, CCDC28A, HIVEP2, ECT2L, FLJ46906, NMBR, AIG1, VTA1, HECA, ADGRG6, ARFGEF3, NHSL1, ABRACL, LINC01625, REPS1) 0.0810951981865097 24 0.0935979685150534 1.12484970309419 1736 0.340536959606218 3 3 0 -7.0212252713253 LTS-041 chr6 143508791 153309762 9800972 * c(UST-AS1, LOC100507557, RAET1E-AS1, UST, RAB32, KATNA1, GINM1, ADAT2, STXBP5, RAET1E, ZC2HC1B, RAET1L, ESR1, TAB2, SASH1, SYNE1, FUCA2, SHPRH, MTHFD1L, FBXO5, PHACTR2-AS1, GRM1, ZC3H12D, NUP43, RAET1G, SUMO4, SAMD5, IYD, PCMT1, AIG1, PLAGL1, MTRF1L, RMND1, HYMAI, PLEKHG1, ZBTB2, RPS18P9, RAET1K, KATNBL1P6, STXBP5-AS1, UTRN, VIP, ULBP3, EPM2A, ARMT1, ADGB, CCDC170, MYCT1, ULBP2, ULBP1, PPP1R14C, NA NA NA NA NA NA NA NA NA LTS-041 SF3B5, FBXO30, LRP11, LTV1, PEX3, PPIL4, STX11, LATS1, AKAP12, PHACTR2) 0.182857650936254 119 0.128243344320413 0.875630198068306 6107 0.288985633887962 2 2 0 -6.8345926703753 LTS-041 NA NA NA NA LTS-041 chr6 153309763 153309782 20 * MTRF1L NA 0 NA 1.155 1 NA NA NA NA NA LTS-041 chr6 153309783 153311302 1520 * MTRF1L NA 0 NA 0.437800754827029 39 0.266315267798052 1 NA NA -5.76544891053924 LTS-041 chr6 153311303 153314084 2782 * MTRF1L NA 0 NA 1.21 1 NA NA NA NA NA LTS-041 chr6 153314085 167587600 14273516 * c(LOC100129518, C6orf99, AIRN, LOC100289495, MIR1913, MIR3918, MIR3939, MIR3692, CAHM, MIR4466, SYNJ2-IT1, RPS6KA2-IT1, EZR-AS1, PDE10A, FGFR1OP, SFT2D1, TAGAP, CCR6, PACRG, CNKSR3, PNLDC1, C6orf118, OSTCP1, SCAF8, IPCEF1, TIAM2, RGS17, GPR31, PACRG-AS1, PRR18, MRPL18, IGF2R, ACAT2, DKFZp451B082, TCP10L2, LPA, GTF2H5, MAS1, MAP3K4, LINC00602, CLDN20, OPRM1, NOX3, PARK2, TFB1M, SNX9, MPC1, PLG, MTRF1L, NA NA NA NA NA NA NA NA NA LTS-041 AGPAT4, TULP4, ARID1B, TMEM181, RPS6KA2, SLC22A1, SLC22A3, SLC22A2, SOD2, SNORA20, SNORA29, T, TCP1, DYNLT1, TMEM242, LOC729603, EZR, ZDHHC14, AGPAT4-IT1, LPAL2, RSPH3, FNDC1, SERAC1, RNASET2, SYNJ2, LINC00473, SYTL3, QKI, WTAP) 0.12479311317169 150 0.113771607825518 0.865705201561977 6532 1.01372256443813 2 2 0 -6.93836560911959 LTS-041 NA NA NA NA LTS-041 chr6 167587601 167705161 117561 * c(TCP10L2, UNC93A) 0.278671519930004 7 0.0696822721186605 0.625558627757595 163 0.378717920854638 1 1 0 -6.73672757674728 LTS-041 chr6 167705162 167707967 2806 * UNC93A NA 0 NA 1.026 1 NA NA NA NA NA LTS-041 chr6 167707968 169051554 1343587 * c(HGC6.3, DACT2, LINC01558, KIF25, AFDN, UNC93A, SMOC2, AFDN-AS1, TCP10, FRMD1, TTLL2) 0.135508689823776 23 0.135257403558516 0.950565608792144 969 0.374344518685789 3 3 0 -6.86396697975878 LTS-041 chr6 169051555 169053656 2102 * SMOC2 NA 0 NA 0.707 1 NA NA NA NA NA LTS-041 chr6 169053657 170627651 1573995 * c(LOC154449, WDR27, DLL1, C6orf120, LINC00242, PHF10, ERMARD, SMOC2, TCTE3, THBS2, LINC00574, FAM120B) 0.172321485816537 15 0.0989825381425575 0.848705061166998 779 0.20869780104717 2 2 0 -6.75642317811698 LTS-041 chr6 170627652 170893599 265948 * c(MIR4644, PDCD2, PSMB1, TBP, FAM120B) NA 0 NA 0.822719148171938 258 0.199538286955838 2 NA NA -5.76682541033142 LTS-041 chr7 193047 331086 138040 * c(WI2-2373I1.2, FAM20C) 0.477 1 NA 0.633389897646723 127 0.162740696917507 1 1 0 -5.78690967512577 LTS-041 chr7 331087 751220 420134 * c(WI2-2373I1.2, HRAT92, LOC442497, PDGFA, PRKAR1B) 0.189010515416763 9 0.137618534765892 0.613042795832882 201 0.195748076879417 1 1 0 -6.97995961701338 LTS-041 chr7 751221 772174 20954 * c(DNAAF5, PRKAR1B) 0.129 1 NA 0.584017195656117 13 0.236397400089829 1 1 0 -5.76441342623008 LTS-041 chr7 772175 882895 110721 * c(SUN1, DNAAF5) 0.0701529562391452 16 0.0177369670462568 0.57564318749442 144 0.228959701732603 7 7 0 -8.44445154282979 LTS-041 chr7 882896 892435 9540 * c(SUN1, GET4) 0.05 1 NA 0.620250948247627 49 0.120715919966396 1 1 0 -5.76601938759296 LTS-041 chr7 892436 2703979 1811544 * c(MIR4648, MIR4655, ADAP1, PSMG3-AS1, GPR146, TMEM184A, BRAT1, IQCE, SUN1, TFAMP1, INTS1, GPER1, SNX8, MRM2, UNCX, ELFN1, LFNG, MIR339, NUDT1, GET4, CYP2W1, CHST12, MAFK, MICALL2, TTYH3, MAD1L1, PSMG3, C7orf50, EIF3B, ZFAND2A, COX19) 0.112056848390737 71 0.109393254383567 0.634447278541829 2443 0.227594538110929 1 1 0 -7.99588891578213 LTS-041 chr7 2703980 2740015 36036 * c(AMZ1, TTYH3) 0.482 1 NA 0.692729712768657 15 0.232326268936802 1 1 0 -5.77658770024102 LTS-041 chr7 2740016 2768935 28920 * c(AMZ1, GNA12) 0.413922638097803 18 0.0923661547101952 0.562747298408591 155 0.140058469746149 2 1 1 -6.90420120134175 LTS-041 chr7 2768936 2769921 986 * GNA12 0.239 1 NA 0.68926142352858 23 0.08308783865769 1 1 0 -5.7668691005192 LTS-041 chr7 2769922 5925699 3155778 * c(RBAK-RBAKDN, MIR4656, RNF216-IT1, SDK1, FOXK1, MMD2, SLC29A4, WIPI2, GNA12, RBAKDN, ZNF815P, RNF216P1, RNF216, RADIL, PAPOLB, RBAK, ACTB, ZNF890P, OCM, FSCN1, MIR589, FBXL18, CARD11, TNRC18, AP5Z1) 0.226522573009619 65 0.14120229282841 0.61925031870073 2285 0.213153842851337 1 1 0 -6.96291488962155 LTS-041 chr7 5925700 5925706 7 * OCM NA 0 NA 0.238 1 NA NA NA NA NA LTS-041 chr7 5925707 6017391 91685 * c(RSPH10B, CCZ1, PMS2, OCM) 0.0402451882439117 4 0.0326228447563973 0.4039450358253 145 0.461249688554443 10 10 0 -7.74302657053927 LTS-041 chr7 6017392 6018170 779 * PMS2 NA 0 NA 0.6 1 NA NA NA NA NA LTS-041 chr7 6018171 14653083 8634913 * c(LOC100131257, ANKRD61, ARL4A, KDELR2, GLCCI1, DGKB, PER4, ETV1, VWDE, DAGLB, CCZ1B, THSD7A, EIF2AK1, NXPH1, ICA1, COL28A1, GRID2IP, PMS2CL, NDUFA4, PMS2, MIOS, TMEM106B, ZNF853, ZDHHC4, C1GALT1, RAC1, RPA3, RSPH10B2, UMAD1, ZNF12, C7orf26, AIMP2, USP42, FAM220A, SCIN, CYTH3, PHF14) 0.294354626571833 87 0.13833606017222 0.584920257138705 3402 0.18496437117184 1 1 0 -6.74831688363543 LTS-041 chr7 14653084 14660926 7843 * DGKB NA 0 NA 0.786 1 NA NA NA NA NA LTS-041 chr7 14660927 16505554 1844628 * c(ISPD-AS1, DGKB, SOSTDC1, AGMO, MEOX2, ISPD) 0.153924014503781 9 0.122186446784321 0.742762593205224 340 0.224152924609443 2 2 0 -7.12401286602803 LTS-041 chr7 16505555 16566442 60888 * SOSTDC1 NA 0 NA 1.188 1 NA NA NA NA NA LTS-041 chr7 16566443 17832587 1266145 * c(LRRC72, AGR2, AGR3, AHR, SNX13, SOSTDC1, TSPAN13, BZW2, ANKMY2) 0.218178201548329 10 0.192155723886181 1.039359465729 462 0.408858406994031 3 3 0 -6.83206719034973 LTS-041 chr7 17832588 17834727 2140 * SNX13 0.403 1 NA 1.02268247036564 42 0.17178790639953 3 3 0 -5.76466804728231 LTS-041 chr7 17834728 20698775 2864048 * c(MIR3146, MACC1-AS1, PRPS1L1, TWISTNB, FERD3L, SNX13, TMEM196, ABCB5, MACC1, ITGB8, TWIST1, HDAC9) 0.407215271022694 28 0.0639521460478613 1.0806611189168 1058 0.313905170088292 3 2 1 -6.98438692163573 LTS-041 chr7 20698776 22330869 1632094 * c(SP8, RPL23P8, ABCB5, CDCA7L, SP4, DNAH11, RAPGEF5) 0.333090163228872 29 0.157211076772912 0.961234734512207 1084 0.312230665278793 3 2 1 -6.9466952890524 LTS-041 chr7 22330870 22347914 17045 * RAPGEF5 NA 0 NA 1.349 1 NA NA NA NA NA LTS-041 chr7 22347915 36340054 13992140 * c(JAZF1-AS1, DPY19L1P1, LOC100130673, HOXA-AS3, HOTTIP, MIR550B2, MIR550B1, LOC100506178, HOTAIRM1, LOC100506497, INMT-FAM188B, HOXA10-HOXA9, MIR550A3, KLHL7-AS1, RNU6-16P, HOXA10-AS, NOD1, GPNMB, IGF2BP3, PPP1R17, NUPL2, HIBADH, INMT, CHN2, FKBP9, CBX3, MALSU1, ADCYAP1R1, CLK2P1, C7orf31, CRHR2, BMPER, DFNA5, EVX1, HOXA11-AS, JAZF1, DKFZP586I1420, MTURN, PRR15, CCDC129, ZNRF2, AVL9, DPY19L1, LSM5, STEAP1B, NA NA NA NA NA NA NA NA NA LTS-041 RPS2P32, KBTBD2, OSBPL3, GARS, GHRHR, BBS9, C7orf71, SNX10, TRA2A, HNRNPA2B1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, FAM221A, IL6, AQP1, NPSR1, LOC401320, LINC00997, LOC401324, NPSR1-AS1, MIR148A, LOC441204, ZNRF2P1, RP9P, DPY19L2P3, MIR196B, NPY, NT5C3A, PDE1C, MPP6, CYCS, CPVL, TOMM7, FKBP14, DPY19L2P1, KLHL7, STK31, TBX20, RP9, NEUROD6, NPVF, HERPUD2, WIPF3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC646762, SNORD93, MIR550A1, MIR550A2, GGCT, EEPD1, FAM188B, FAM126A, PLEKHA8, TAX1BP1, SKAP2, CCDC126, CREB5, NFE2L3, RAPGEF5, SCRN1, KIAA0087, TRIL, SEPT7) 0.37351066708173 186 0.127793089176932 1.32987371242021 7506 0.622509707475767 4 2 2 -6.76276445687499 LTS-041 NA NA NA NA LTS-041 chr7 36340055 37991277 1651223 * c(MIR1200, AOAH-IT1, KIAA0895, AOAH, GPR141, NME8, ANLN, EPDR1, SFRP4, EEPD1, ELMO1) 0.40318009174669 25 0.127553622710869 1.18935299702336 877 0.428959729818001 3 2 1 -6.81377377218516 LTS-041 chr7 37991278 47969090 9977813 * c(MIR3943, TRG-AS1, LOC100506895, URGCP-MRPS24, MIR4649, POU6F2-AS1, RAMP3, YKT6, ADCY1, POU6F2, MPLKIP, AEBP1, PKD1L1, TMED4, HECW1, NACAD, NUDCD3, LINC00957, GCK, VPS41, AMPH, GLI3, POLM, INHBA-AS1, SPDYE1, SNHG15, DBNL, NPC1L1, FAM183BP, IGFBP1, IGFBP3, LINC00265, INHBA, RASA4CP, C7orf65, TARP, OGDH, UBE2D4, PGAM2, POLD2, DDX56, EPDR1, PPIA, URGCP, COA1, PSMA2, YAE1D1, PURB, MYL7, RALA, MYO1G, NA NA NA NA NA NA NA NA NA LTS-041 SEPT7P2, BLVRA, LOC646999, TNS3, MRPS24, MRPL32, SNORA5B, SNORA5C, SNORA9, C7orf25, SUGCT, C7orf69, CAMK2B, CCM2, ZMIZ2, STARD3NL, POLR2J4, LINC00525, CDK13, TBRG4, STK17A, H2AFV) 0.388074058067497 149 0.110696966256861 1.32190521993676 5840 0.640822897196744 4 2 2 -6.74994644961014 LTS-041 NA NA NA NA LTS-041 chr7 47969091 47970762 1672 * PKD1L1 NA 0 NA 1.268 1 NA NA NA NA NA LTS-041 chr7 47970763 57532512 9561750 * c(DDC-AS1, LOC100130849, C7orf72, MIR3147, EGFR-AS1, IKZF1, ZPBP, C7orf57, ABCA13, DDC, CDC14C, PKD1L1, EGFR, VSTM2A, DKFZp434L192, COBL, SEC61G, SUN3, SUMF2, GBAS, POM121L12, VSTM2A-OT1, GRB10, HPVC1, HUS1, SEPT14, ZNF713, FKBP9P1, VWC2, NUPR2, LINC01446, ZNF716, CHCHD2, MRPS17, PHKG1, LANCL2, PSPH, FIGNL1, GUSBP10, LOC650226, SNORA15, UPP1, VOPP1, CCT6A, ZNF479) 0.347086226273498 100 0.154072881875082 1.25034752744354 3306 0.424140372958762 4 3 1 -7.01282388577791 LTS-041 chr7 57532513 57533232 720 * ZNF716 NA 0 NA 1.69374199976203 13 0.580283341489532 5 NA NA -5.76441218516499 LTS-041 chr7 62758725 63023528 264804 * ZNF733P 0.42 1 NA 1.56472270568571 7 1.54215009151571 5 5 0 -5.7645129223342 LTS-041 chr7 63023529 64639874 1616346 * c(LOC100128885, LINC01005, ZNF273, ZNF679, ERV3-1, ZNF680, ZNF727, ZNF117, ZNF107, LOC641746, CCT6P3, YWHAEP1, ZNF736, ZNF735, ZNF138) 0.43471642678957 26 0.0721813954295277 1.43206190038083 611 0.382066193811417 4 2 2 -6.93969002843907 LTS-041 chr7 64639875 64643339 3465 * character(0) NA 0 NA 1.046 1 NA NA NA NA NA LTS-041 chr7 64643340 65157832 514493 * c(ZNF92, LOC441242, INTS4P2) 0.276975396511635 4 0.204366296960466 0.945243442529013 97 0.668673276422331 4 3 1 -6.83811751521951 LTS-041 chr7 65157833 65159972 2140 * c(LOC441242, INTS4P2) NA 0 NA 1.65 1 NA NA NA NA NA LTS-041 chr7 65159973 86508104 21348132 * c(POM121C, PMS2P9, LOC100133091, MIR548M, MIR4284, MIR3914-1, MIR3914-2, APTR, MAGI2-AS3, MIR4651, MIR4650-1, MIR4650-2, MIR548AU, MAGI2-AS2, CCL26, SEMA3A, SEMA3C, FGL2, DTX2, WBSCR22, WBSCR28, TRIM50, CLDN4, CLDN3, SSC4D, VKORC1L1, KCTD7, WBSCR27, SBDSP1, VPS37D, NSUN5P1, ABHD11-AS1, ELN, SRRM3, RSBN1L, KIAA1324L, SEMA3D, POMZP3, NSUN5P2, AUTS2, TBL2, CRCP, RABGEF1, PCLO, GNAI1, LINC00174, GRM3, GTF2I, NA NA NA NA NA NA NA NA NA LTS-041 GTF2IP1, GUSB, HGF, HIP1, HSPB1, GNAT3, TRIM73, NA, GTF2IRD2B, LIMK1, RPL13AP17, GTF2IRD2P1, MDH2, ASL, LOC441242, TYW1B, SPDYE7P, DTX2P1-UPK3BP1-PMS2P11, STAG3L3, STAG3L2, SPDYE5, GS1-124K5.11, MLXIPL, SBDS, STYXL1, PMS2P4, PMS2P5, PMS2P3, GSAP, LOC541473, STAG3L1, POR, TMEM248, TYW1, NSUN5, PHTF2, RHBDD2, CCDC146, PTPN12, RFC2, FDPSP2, CCL24, CCT6P1, WBSCR17, INTS4P2, STAG3L4, NCF1, NCF1B, NCF1C, SNORA14A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SNORA22, STX1A, MIR590, GTF2IRD1P1, GATSL2, EIF4H, CLIP2, LAT2, YWHAG, ZP3, CACNA2D1, UPK3B, RCC1L, FZD9, ABHD11, CALN1, TMEM120A, GTF2IRD2, DNAJC30, TPST1, FKBP6, TMEM60, BAZ1B, BCL7B, CD36, GTF2IRD1, SEMA3E, MAGI2, POM121) 0.374847793540949 154 0.144607525941308 1.46888457775143 7947 0.485265328007484 4 2 2 -7.0169910288821 LTS-041 NA NA NA NA LTS-041 chr7 86508105 86508203 99 * KIAA1324L NA 0 NA 1.386 1 NA NA NA NA NA LTS-041 chr7 86508204 100490797 13982594 * c(PCOLCE-AS1, GS1-259H13.2, SAP25, MIR3609, LOC100506136, ATP5J2-PTCD1, MIR4652, MIR4658, CYP3A7-CYP3A51P, ARPC1B, LOC101409256, AKAP9, SLC25A13, CDK6, POP7, BET1, ARPC1A, STAG3, CPSF4, DBF4, COPS6, TP53TG1, PDAP1, COL1A2, RUNDC3B, CYP3A7, CYP3A4, CYP3A5, CYP51A1, BHLHA15, DLX5, DLX6, DYNC1I1, EPHB4, EPO, SAMD9L, C7orf62, ZNF804B, ZSCAN25, FAM200A, PPP1R35, GPC2, KIAA1324L, TMEM130, NYAP1, LMTK2, PEG10, NA NA NA NA NA NA NA NA NA LTS-041 ZKSCAN5, CNPY4, HEPACAM2, MBLAC1, FAM133B, BRI3, TECPR1, PTCD1, STEAP2, FBXO24, STEAP1, GNB2, GNG11, GNGT1, DLX6-AS1, ZNF789, PILRB, PILRA, AGFG2, GJC3, GATS, MGC72080, LAMTOR4, LRRD1, C7orf76, KPNA7, C7orf61, UFSP1, LRCH4, MIR106B, MIR25, MIR93, MCM7, ACHE, ASNS, SPDYE3, DPY19L2P4, NPTX2, OCM2, PCOLCE, ACTL6B, SRRT, PDK4, ASB4, PEX1, CDK14, ABCB1, ABCB4, ADAM22, PMS2P1, PON1, PON2, PON3, ANKIB1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CROT, SAMD9, ZCWPW1, C7orf43, PPP1R9A, VPS50, BAIAP2L1, SLC25A40, MEPCE, AZGP1, SLC12A9, SDHAF3, SMURF1, MIR489, GATAD1, MOSPD3, GIGYF1, AZGP1P1, CYP3A43, CASD1, SRI, TAC1, TAF6, MIR591, TFR2, TRIP6, MIR653, ZAN, ZNF3, ZKSCAN1, ZSCAN21, ZNF655, PVRIG, TMEM243, STEAP4, GAL3ST4, MTERF1, SHFM1, TFPI2, CFAP69, CALCR, OR2AE1, TSC22D4, TRRAP, FZD1, RBM48, ZNF394, MYH16, NA, GTPBP10, KRIT1, BUD31, SGCE, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 TRIM4, CLDN12, AP4M1, ATP5J2, DMTF1) 0.381633763891098 187 0.134217685055928 1.41785629734413 12782 0.391030570898586 4 2 2 -6.81291921306137 LTS-041 NA NA NA NA LTS-041 chr7 100490798 100549499 58702 * ACHE NA 0 NA 1.41131935828767 38 0.191244773262284 4 NA NA -5.76543872789633 LTS-041 chr7 100549500 100549505 6 * character(0) NA 0 NA 5.101 1 NA NA NA NA NA LTS-041 chr7 100549506 100549650 145 * character(0) 0.412 1 NA 3.38879058927715 9 1.22779400190387 12 12 0 -5.76441015741143 LTS-041 chr7 100549651 100550504 854 * character(0) 0.363352089865725 29 0.112908426646915 3.06501284018008 53 1.48043063376618 11 7 4 -6.73304271726319 LTS-041 chr7 100550505 100550726 222 * character(0) NA 0 NA 1.993 1 NA NA NA NA NA LTS-041 chr7 100550727 100551096 370 * character(0) 0.29747303989597 7 0.103675317354573 0.771285290002829 39 0.461628419370873 11 8 3 -6.7355144652825 LTS-041 chr7 100551097 100551106 10 * character(0) 0.273 1 NA 2.86 1 NA NA NA NA NA LTS-041 chr7 100551107 100552739 1633 * character(0) 0.333998475418596 58 0.0821146631658199 2.84208125522708 93 1.46257277207136 18 12 6 -6.73452036522341 LTS-041 chr7 100552740 100552745 6 * character(0) NA 0 NA 1.374 1 NA NA NA NA NA LTS-041 chr7 100552746 100687115 134370 * c(MUC12, MUC17) 0.367800255121549 54 0.113861495913115 1.7225007906841 435 1.10734515194414 8 5 3 -6.74116017374921 LTS-041 chr7 100687116 100691170 4055 * MUC17 NA 0 NA 1.085 1 NA NA NA NA NA LTS-041 chr7 100691171 100699411 8241 * MUC17 0.351184972473702 4 0.22797569314878 1.46928248643048 42 1.13941766332555 6 4 2 -6.73327346558961 LTS-041 chr7 100699412 100731505 32094 * c(MUC17, TRIM56) 0.466 1 NA 1.39741629108767 41 0.242565505359365 4 4 0 -5.76458003567 LTS-041 chr7 100731506 108111049 7379544 * c(RPL19P12, EFCAB10, KMT2E-AS1, LINC01004, RASA4B, LOC100289561, SPDYE2B, MIR4285, MIR4653, MIR4467, LOC100630923, MIR5090, NAMPT, RASA4, LRRC17, COG5, ZNHIT1, SH2B2, DUS4L, AP1S1, COL26A1, CUX1, CCDC71L, DLD, SLC26A3, LRWD1, FAM185A, FBXL13, NAPEPLD, ATXN7L1, CDHR3, LAMB4, CLDN15, POLR2J2, HBP1, DNAJC2, GPR22, SLC26A4-AS1, MOGAT3, DPY19L2P2, NAT16, SLC26A5, LHFPL3, LAMB1, NRCAM, ORC5, SERPINE1, PNPLA8, NA NA NA NA NA NA NA NA NA LTS-041 FIS1, SLC26A4, PIK3CG, POLR2J, PUS7, ALKBH4, POLR2J3, PRKAR2B, KMT2E, BCAP29, RELN, PSMC2, RINT1, LHFPL3-AS1, IFT22, SRPK2, SYPL1, LHFPL3-AS2, SPDYE6, VGF, PRKRIP1, CBLL1, ORAI2, TRIM56, ARMC10, PLOD3, MYL10, PMPCB) 0.390154356324946 102 0.12488495540686 1.424869774994 6009 0.386828600858547 4 2 2 -6.78573288356927 LTS-041 NA NA NA NA LTS-041 chr7 108111050 131073818 22962769 * c(LOC100130705, SMKR1, MIR3666, RNA5SP244, AASS, FAM3C, CFTR, ZNF277, TSGA13, CPA1, CPA2, KLF14, SSMEM1, ASZ1, ASB15, BMT2, FEZF1-AS1, IQUB, C7orf77, C7orf66, MGC27345, RNF133, THAP5, ZNF800, TFEC, KLHDC10, FLNC, AHCYL2, TNPO3, HYAL4, TSPAN12, POT1, HYALP1, TES, COPG2, SND1, SND1-IT1, LSMEM1, TPI1P2, GPR37, GRM8, HILPDA, MDFIC, FSCN3, MESTIT1, ST7-OT4, TSPAN33, FAM71F2, IFRD1, IMPDH1, IRF5, KCND2, NA NA NA NA NA NA NA NA NA LTS-041 KCP, LINC-PINT, RNF148, ARF5, FEZF1, LEP, LINC00998, PRRT4, LINC01000, MIR129-1, MIR182, MIR183, MIR29A, MIR29B1, MIR96, LOC407835, DNAJB9, MEST, MET, MKLN1, EIF3IP1, LMOD2, MIR335, NDUFA5, NRF1, PNPLA8, PAX4, TAS2R16, CPA4, WNT16, ZC3HC1, LSM8, GPR85, ING3, LRRN3, PPP1R3A, RBM28, METTL2B, ANKRD7, STRIP2, PTPRZ1, OPN1SW, LRRC4, TMEM168, NA, CCDC136, SLC13A1, SMO, SPAM1, MIR592, MIR593, TMEM229A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 UBE2H, WNT2, GCC1, ST7, CPED1, CALU, CAPZA2, IMMP2L, CTTNBP2, FAM71F1, TMEM209, CAV1, CAV2, WASL, ATP6V1F, ST7-AS1, ST7-AS2, ST7-OT3, CADPS2, CPA5, FOXP2, CEP41, DOCK4) 0.391080436948794 174 0.127758644499836 1.31006351367453 9920 0.441776567133772 4 2 2 -6.85387542038114 LTS-041 NA NA NA NA LTS-041 chr7 131073819 131081977 8159 * MKLN1 NA 0 NA 1.555 1 NA NA NA NA NA LTS-041 chr7 131081978 141957504 10875527 * c(LOC100129148, LOC100130880, JHDM1D-AS1, NDUFB2-AS1, MOXD2P, TMEM178B, MIR4468, C7orf55-LUC7L2, CHRM2, OR9A4, PRSS37, SVOPL, LRGUK, PRSS58, CLEC2L, FMC1, TMEM213, AKR1B1, NUP205, CLEC5A, MKRN1, UBN2, SLC13A4, DENND2A, WEE2-AS1, FLJ40288, HIPK2, WDR91, AGBL3, STRA8, KLRG2, LOC349160, FAM180A, RAB19, MKLN1, AKR1B15, NDUFB2, CNOT4, WEE2, ATP6V0A4, TAS2R3, TAS2R4, LUC7L2, MRPS33, PODXL, TAS2R5, CHCHD3, TMEM140, NA NA NA NA NA NA NA NA NA LTS-041 AGK, ZC3HAV1, AKR1B10, KIAA1147, TAS2R38, MIR490, PTN, KIAA1549, EXOC4, C7orf73, PARP12, CREB3L2, BPGM, AKR1D1, BRAF, SSBP1, TBXAS1, LUZP6, C7orf49, TTC26, CALD1, KDM7A, SLC37A3, SLC35B4, TRIM24, MGAM, ADCK2, PLXNA4, DGKI, ZC3HAV1L, MGAM2) 0.362322757668127 147 0.111494944020649 1.42361924878281 7708 0.437327297510209 4 2 2 -6.83662379213871 LTS-041 NA NA NA NA LTS-041 chr7 141957505 142028500 70996 * c(PRSS58, NA) 0.129 1 NA 1.38967571255007 59 0.720418687927145 4 4 0 -5.76443450190858 LTS-041 chr7 142028501 142120072 91572 * character(0) 0.195835770826814 12 0.0926649225909561 1.66005831708214 65 1.43491096815742 7 6 1 -6.73502603058293 LTS-041 chr7 142120073 142120191 119 * character(0) NA 0 NA 2.359 1 NA NA NA NA NA LTS-041 chr7 142120192 142482376 362185 * c(MTRNR2L6, PRSS3P2, PRSS1) 0.282333671958076 50 0.14261275667817 1.93758661024313 337 2.28091364997728 8 6 2 -6.73505075682461 LTS-041 chr7 142482377 142494553 12177 * PRSS3P2 NA 0 NA 2.44218149687551 10 2.32968988160322 8 NA NA -5.76441035026603 LTS-041 chr7 142494554 142494606 53 * character(0) 0.409 1 NA 1.574 1 NA NA NA NA NA LTS-041 chr7 142494607 143840031 1345425 * c(CLCN1, OR9A2, C7orf34, TMEM139, OR2A14, OR6B1, OR2F2, LOC154761, EPHA1, EPHB6, TAS2R39, TAS2R40, TAS2R41, OR2F1, EPHA1-AS1, TCAF2, TAS2R60, CTAGE6, OR6V1, OR2A12, GSTK1, KEL, OR2A25, OR2A5, CTAGE15, OR2A2, PIP, TRPV6, TRPV5, ZYX, CASP2, OR6W1P, FAM131B, TCAF1) 0.395782096552141 73 0.10942622077454 1.44515736259669 1732 0.511465034373966 4 2 2 -6.74314622897732 LTS-041 chr7 143840032 143883364 43333 * ARHGEF35 NA 0 NA 0.66 1 NA NA NA NA NA LTS-041 chr7 143883365 143982428 99064 * c(OR2A7, ARHGEF35, ARHGEF34P) NA 0 NA 0.616777665821381 81 0.327229468416278 1 NA NA -5.76630289616758 LTS-041 chr7 143982429 143982436 8 * ARHGEF34P NA 0 NA 0.662 1 NA NA NA NA NA LTS-041 chr7 143982437 144074299 91863 * c(ARHGEF34P, ARHGEF5) 0 1 NA 0.880119379747374 74 0.618630723491317 2 2 0 -5.76467503852605 LTS-041 chr7 144074300 158930775 14856476 * c(HTR5A-AS1, LINC01003, WDR86-AS1, PAXIP1-AS2, ZNF783, MIR548I4, MIR548F4, DNAJB6, MIR3907, PRKAG2-AS1, LOC100506585, GIMAP1-GIMAP5, ABCF2, MIR5707, MIR548AQ, RNU6-34P, CDK5, FASTK, ABCB8, ZBED6CL, AGAP3, C7orf13, NOBOX, ZNF786, ASB10, RNF32, LINC00689, GIMAP8, CRYGN, ZNF425, LOC155060, ZNF746, ATP6V0E2, RBM33, GALNTL5, GIMAP7, ZNF467, GIMAP1, DPP6, EN2, PAXIP1-AS1, C7orf33, EZH2, FABP5P3, PAXIP1, SSPO, AOC1, NA NA NA NA NA NA NA NA NA LTS-041 CNTNAP2, GIMAP2, GBX1, TPK1, ZNF777, CNPY1, LOC285889, ZNF775, LINC00996, ATG9B, TMEM176B, REPIN1, MNX1, HTR5A, WDR86, INSIG1, KCNH2, ATP6V0E2-AS1, MIR153-2, GIMAP6, NOS3, PRKAG2, NUB1, CHPF2, NCAPG2, WDR60, GIMAP4, GIMAP5, TMEM176A, ACTR3B, ESYT2, ZNF398, PTPRN2, KMT2C, RARRES2, RHEB, GALNT11, LMBR1, ZNF862, LINC00244, NOM1, MNX1-AS1, SHH, SLC4A2, ACTR3C, LRRC61, SMARCD3, MIR595, LOC728743, VIPR2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 XRCC2, MIR671, ARHGEF5, ZNF212, ZNF767P, TMUB1, ZNF282, CUL1, KRBA1, ASIC3, PDIA4, UBE3C) 0.379126295319901 224 0.116708893093449 1.37620774020705 9546 0.621245581213509 4 2 2 -6.74308661490571 LTS-041 NA NA NA NA LTS-041 chr7 158930776 159025951 95176 * VIPR2 NA 0 NA 1.54153381075632 19 0.326148837691452 5 NA NA -5.76598418452039 LTS-041 chr8 182757 182934 178 * ZNF596 0.355 1 NA 0.443523195699813 3 0.273906918496047 1 1 0 -5.76451436333434 LTS-041 chr8 182935 7214028 7031094 * c(FAM66B, LOC100287015, MIR4659A, MIR4659B, GS1-24F4.2, TDRP, ERICH1, DEFA1, DEFA4, DEFA5, DEFA6, DEFB1, ZNF596, DEFT1P, CLN8, FBXO25, ANGPT2, LOC286083, XKR5, USP17L1, DEFA8P, DEFA9P, DEFA10P, AGPAT5, ERICH1-AS1, CSMD1, USP17L4, MIR596, DEFA11P, DEFA1B, MCPH1, MYOM2, DLGAP2, ARHGEF10, KBTBD11) 0.210192009582405 64 0.144942158003345 0.596451946045216 2315 0.213318291691923 1 1 0 -6.90996033966274 LTS-041 chr8 7214029 7272382 58354 * ZNF705G NA 0 NA 0.274 1 NA NA NA NA NA LTS-041 chr8 7272383 7752350 479968 * c(DEFB4B, DEFB4A, DEFB107A, FAM90A7P, FAM90A10P, DEFB107B, SPAG11A) 0 1 NA 0.232645866881966 108 0.493280504577178 0 0 0 -5.88326758101014 LTS-041 chr8 7752351 8175294 422944 * c(FAM66E, ZNF705B, MIR548I3, SGK223, DEFB4A, FAM86B3P, USP17L8, USP17L3) NA 0 NA 0.558 1 NA NA NA NA NA LTS-041 chr8 8175295 10920575 2745281 * c(MIR1322, MIR4660, CLDN23, LOC157273, SGK223, LINC00599, PRSS55, C8orf74, XKR6, MIR124-1, MSRA, PINX1, MIR597, MIR598, PPP1R3B, SOX7, TNKS, ERI1, MFHAS1, RP1L1) 0.230420822471628 56 0.139587870896073 0.607059814232366 1510 0.589193024282502 1 1 0 -6.80399911634584 LTS-041 chr8 10920576 10964676 44101 * XKR6 NA 0 NA 1.841 1 NA NA NA NA NA LTS-041 chr8 10964677 14412421 3447745 * c(FAM66D, FAM66A, MIR3926-2, MIR3926-1, LOC100506990, LINC00681, DLC1, SGCZ, CTSB, TDH, C8orf48, FDFT1, DEFB109P1, DEFB130, NEIL2, GATA4, XKR6, LOC340357, USP17L2, FAM90A25P, LOC392196, USP17L7, KIAA1456, DEFB135, DEFB136, DEFB134, BLK, LOC649352, FAM86B2, MTMR9, ZNF705D, FAM90A2P, LOC729732, FAM167A, SLC35G5, LINC00208, FAM167A-AS1, FAM86B1, LONRF1) 0.372276656342607 41 0.109687182700535 0.799282027913284 1672 0.216929875558653 2 1 1 -6.87791653639121 LTS-041 chr8 14412422 14710951 298530 * c(SGCZ, MIR383) NA 0 NA 0.232 1 NA NA NA NA NA LTS-041 chr8 14710952 16859688 2148737 * c(SGCZ, FGF20, MSR1, MIR383, TUSC3) 0.256075799643533 6 0.0846608921915347 0.556157606769738 298 0.186761614409673 1 1 0 -6.83911077351291 LTS-041 chr8 16859689 16884750 25062 * MICU3 NA 0 NA 1.042 1 NA NA NA NA NA LTS-041 chr8 16884751 17156011 271261 * c(VPS37A, MICU3, CNOT7, ZDHHC2, MTMR7) 0.179098712242035 4 0.215238433680728 0.710769699727783 320 0.189765032796914 2 2 0 -6.86408943487289 LTS-041 chr8 17156012 24212691 7056680 * c(NAT2, LOC100128993, LOC100507156, LZTS1-AS1, SORBS3, NPM2, ADAM28, LZTS1, NKX2-6, PEBP4, EGR3, R3HCC1, LGI3, DMTN, FGL1, XPO7, RHOBTB2, PSD3, SLC39A14, LOC254896, GFRA2, LOC286059, LOC286114, LOC389641, LOXL2, LPL, MIR320A, ASAH1, NKX3-1, PCM1, SLC25A37, PDGFRL, ATP6V1B2, C8orf58, PIWIL2, INTS10, PPP3CC, CSGALNACT1, HR, BIN3, MTUS1, CCAR2, SH2D4A, PDLIM2, SFTPC, FAM160B2, BMP1, SLC7A2, SLC18A1, POLR3D, NA NA NA NA NA NA NA NA NA LTS-041 STC1, NUDT18, BIN3-IT1, REEP4, TNFRSF10D, TNFRSF10C, TNFRSF10B, TNFRSF10A, FGF17, NAT1, DOK2, MTMR7, CHMP7, ENTPD4, PHYHIP) 0.250689981359072 97 0.157716965188427 0.603173416056778 5855 0.463453490045496 1 1 0 -6.77362585922918 LTS-041 NA NA NA NA LTS-041 chr8 24212692 24212695 4 * ADAM28 NA 0 NA 0.403 1 NA NA NA NA NA LTS-041 chr8 24212696 25203159 990464 * c(ADAM28, ADAMDEC1, NEFM, NEFL, DOCK5, ADAM7) 0.0429955023398603 2 0.0523259018078045 0.515522134239924 599 0.173080518246261 1 1 0 -11.8108880298546 LTS-041 chr8 25203160 25209158 5999 * DOCK5 NA 0 NA 0.614 1 NA NA NA NA NA LTS-041 chr8 25209159 38709553 13500395 * c(RBPMS-AS1, MIR4287, MIR3148, MIR4288, MIR3622A, MIR3622B, SMIM18, MIR548O2, NRG1-IT3, DCTN6, PNMA2, RBPMS, ERLIN2, PROSC, CHRNA2, CLU, GOT1L1, UNC5D, LETM2, ADRA1A, ADRB3, CDCA2, ESCO2, FBXO16, KCNU1, DPYSL2, DUSP4, EIF4EBP1, EPHX2, EXTL3, PTK2B, FGFR1, TRIM35, DDHD2, KIF13B, LEPROTL1, ADGRA2, LSM1, GNRH1, SCARA5, FAM183CP, RNF5P1, GSR, GTF2E2, PURG, NRG1, NUGGC, C8orf86, SCARA3, SARAF, PNOC, KCTD9, NA NA NA NA NA NA NA NA NA LTS-041 WHSC1L1, ELP3, PPP2CB, PPP2R2A, CCDC25, BRF2, INTS9, PBK, ZNF395, TEX15, LINC00589, MBOAT4, EBF2, BNIP3L, STAR, TACC1, LOC728024, WRN, DUSP26, HMBOX1, FZD3, RNF122, UBXN8, DOCK5, ZNF703, TTI2, RAB11FIP1, STMN4, PLPP5, MAK16, FUT10, ASH2L, BAG4) 0.225860748543841 141 0.152160878441421 0.584929686121955 8070 0.191702001469058 1 1 0 -6.80303816925047 LTS-041 NA NA NA NA LTS-041 chr8 38709554 38801389 91836 * c(PLEKHA2, TACC1) NA 0 NA 0.653330014766988 30 0.124501654884445 1 NA NA -5.81184694838365 LTS-041 chr8 38801390 39463823 662434 * c(LOC100130964, ADAM3A, HTRA4, ADAM32, ADAM5, PLEKHA2, TM2D2, ADAM18, ADAM9) 0.448 1 NA 0.855956152632713 573 0.236464117643901 2 2 0 -5.76601977620631 LTS-041 chr8 39463824 40554818 1090995 * c(IDO2, ADAM2, IDO1, C8orf4, ZMAT4, ADAM18) 0.422133840392907 8 0.0600105645461102 0.893268925049705 408 0.259048088815061 2 1 1 -6.90132420686817 LTS-041 chr8 40554819 43056996 2502178 * c(MIR4469, AP3M2, CHRNB3, SMIM19, GPAT4, HGSNAT, NKX6-3, FNTA, DKK4, ANK1, IKBKB, GOLGA7, PLAT, POLB, THAP1, MIR486-1, SFRP1, SLC20A2, VDAC3, ZMAT4, KAT6A, RNF170, POMK, GINS4, HOOK3, CHRNA6) 0.398303676331163 39 0.141690421125059 1.00722932062378 2480 0.326901748265296 3 2 1 -6.88188191720652 LTS-041 chr8 43056997 43212050 155054 * c(HGSNAT, POTEA) NA 0 NA 1.04863566175744 65 0.371357265648593 3 NA NA -5.766230261926 LTS-041 chr8 47752736 47759712 6977 * LINC00293 0.398 1 NA 0.999971387464198 23 0.462203974273255 3 3 0 -5.76460398017212 LTS-041 chr8 47759713 55612181 7852469 * c(LOC100287846, LYPLA1, CEBPD, PCMTD1, PXDNL, SPIDR, NPBWR1, MRPL15, FAM150A, MCM4, C8orf22, LINC00293, OPRK1, ATP6V1H, SNTG1, PRKDC, RP1, SOX17, SNAI2, TCEA1, UBE2V2, EFCAB1, RGS20, ST18, RB1CC1) 0.342517799381985 41 0.146651835909442 1.00417749225902 2736 0.300781207047715 3 2 1 -7.18691545707457 LTS-041 chr8 55612182 55613997 1816 * RP1 NA 0 NA 0.677 1 NA NA NA NA NA LTS-041 chr8 55613998 67972815 12358818 * c(TCF24, MIR124-2HG, LOC100130298, SBF1P1, LINC00967, RRS1-AS1, LINC00968, LINC01606, C8orf44-SGK3, MIR4470, YTHDF3-AS1, COPS5, XKR4, TMEM68, ADHFE1, UBXN2B, CRH, MCMDC2, CLVS1, CYP7A1, SDR16C5, RRS1, SGK3, YTHDF3, C8orf46, LINC00588, PTTG3P, SNORD54, BHLHE22, LOC286177, NKAIN3, LINC01289, LINC01299, PPP1R42, LOC401463, LYN, MIR124-2, MOS, ASPH, MYBL1, PDE7A, PENK, PLAG1, IMPAD1, ARMC1, LINC00251, CHD7, NA NA NA NA NA NA NA NA NA LTS-041 C8orf44, RAB2A, RP1, RPS20, SDCBP, SNHG6, SNORD87, UG0898H09, TTPA, CA8, CHCHD7, VCPIP1, NSMAF, TRIM55, DNAJC5B, GGH, FAM110B, CYP7B1, MTFR1, TGS1, TOX) 0.344789268116885 64 0.127411709821363 0.863191086559977 4462 0.269164792214853 2 1 1 -6.87440112678181 LTS-041 NA NA NA NA LTS-041 chr8 67972816 67973598 783 * COPS5 NA 0 NA 2.484 1 NA NA NA NA NA LTS-041 chr8 67973599 79645486 11671888 * c(STAU2-AS1, C8orf89, MSC-AS1, ZFHX4-AS1, MIR2052, LINC01592, MIR5681A, MIR5681B, LOC101241902, NCOA2, ARFGEF1, COPS5, C8orf34, RDH10, SBSPON, EYA1, SULF1, TRAM1, LY96, STAU2, C8orf34-AS1, LACTB2-AS1, HNF4G, IL7, XKR9, LOC392232, MIR2052HG, PI15, ZC2HC1A, LACTB2, GDAP1, TMEM70, UBE2W, PKIA, JPH1, CPA6, PEX2, RPL7, PRDM14, TCEB1, TERF1, ZFHX4, CSPP1, PREX2, SLCO5A1, CRISPLD1, TRPA1, MSC, KCNB2) 0.365093060159523 98 0.12648837564438 1.02490967138247 4414 0.308836242493894 3 2 1 -7.11840459455702 LTS-041 chr8 79645487 86027503 6382017 * c(MIR5708, STMN2, RALYL, FABP4, FABP5, HEY1, MRPS28, SLC10A5, IL7, IMPA1, PMP2, PAG1, ZNF704, SNX16, FABP9, FABP12, ZBTB10, TPD52, ZFAND1, LRRCC1, CHMP4C) 0.363363199590126 18 0.060956322088971 0.886411808870642 1594 0.240352881532441 2 1 1 -7.03518176823551 LTS-041 chr8 86027504 87587935 1560432 * c(REXO1L2P, WWP1, SLC7A13, E2F5, ATP6V0D2, REXO1L1P, CA13, C8orf59, RMDN1, CNGB3, CA1, CA2, CA3, LRRCC1, PSKH2, CPNE3) 0.346200822519402 16 0.108906993959678 0.745243756605431 1008 0.202989402426526 2 1 1 -7.17067400838146 LTS-041 chr8 87587936 87588034 99 * CNGB3 NA 0 NA 1.114 1 NA NA NA NA NA LTS-041 chr8 87588035 124266908 36678874 * c(MIR875, C8orf88, LRRC69, FAM83A-AS1, LOC100288748, MIR2053, MIR3150A, MIR3151, BAALC-AS1, LOC100500773, MIR3150B, MIR3610, ZHX1-C8orf76, MIR378D2, MIR4661, MIR4663, MIR4471, C8orf37-AS1, MIR5680, LINC00536, FSBP, LINC00534, CDH17, RIDA, CPQ, COLEC10, POP1, ZHX1, MAL2, CSMD3, SLC26A7, CTHRC1, OSR2, COX6C, FAM92A1, NDUFAF6, ABRA, DCAF4L2, BAALC-AS2, ANKRD46, C8orf37, VPS13B, TMEM74, DECR1, CNBD1, SLC30A8, NA NA NA NA NA NA NA NA NA LTS-041 SNX31, TMEM64, DPYS, ERICH5, EXT1, ZHX2, ZFPM2, RAD54B, DCAF13, RNF19A, KIAA1429, RGS22, GEM, SNORA72, PABPC1, KCNV1, MTBP, ANGPT1, TRIQK, DPY19L4, FBXO43, MRPL13, LRP12, HAS2, RSPO2, EIF3E, KCNS2, C8orf87, RBM12B, GDF6, SAMD12, MATN2, MMP16, FLJ46284, FLJ42969, AARD, NBN, NOV, ODF1, TNFRSF11B, RRM2B, MTERF3, ZNF706, UBR5, AZIN1, OTUD6B, ENPP2, ATP6V1C1, POLR2K, PDP1, CNGB3, ESRP1, OXR1, SAMD12-AS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LAPTM4B, RBM12B-AS1, TMEM55A, SYBU, INTS8, ENY2, RAD21, HAS2-AS1, RPL30, LINC01298, SDC2, NECAB1, LINC00535, RAD21-AS1, DEPTOR, SNTB1, SPAG1, STK3, TAF2, MIR599, KLF10, TRHR, TRPS1, OSGIN2, COL14A1, UQCRB, YWHAZ, DSCC1, DERL1, CALB1, PLEKHF2, NIPAL2, BAALC, GRHL2, SLC25A32, DCSTAMP, FZD6, NACAP1, NCALD, UTP23, C8orf76, NUDCD1, FAM83A, TSPYL5, RUNX1T1, EIF3H, RIPK2, MED30, TMEM67, CCNE2, EBAG9, MTDH, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PKHD1L1, TBC1D31, TP53INP1, EMC2, RIMS2, PTDSS1) 0.354118661077376 259 0.117778164988147 0.935849638683464 13790 0.672698064351718 2 1 1 -7.28563201683011 LTS-041 NA NA NA NA LTS-041 chr8 124266909 136533597 12266689 * c(LINC00861, MIR1205, MIR1206, MIR1207, MIR1204, MIR1208, ASAP1-IT2, ZHX1-C8orf76, PCAT1, MIR5194, HHLA1, TRIB1, NDRG1, KHDRBS3, RNF139, ZHX1, ADCY8, FBXO32, ZNF572, TMEM71, TMEM65, LINC00964, FAM84B, FAM91A1, EFR3A, LRRC6, NSMCE2, LINC01591, ATAD2, ASAP1-IT1, ANXA13, KLHL38, KCNQ3, MIR30B, MIR30D, FER1L6-AS1, MYC, NDUFB9, ASAP1, PHF20L1, FAM49B, POU5F1B, TRMT12, WDYHV1, GSDMC, ZFAT, PVT1, ZFAT-AS1, ST3GAL1, NA NA NA NA NA NA NA NA NA LTS-041 SLA, FER1L6, SQLE, TG, CASC8, LINC00977, OC90, TATDN1, WISP1, HPYR1, MTSS1, KIAA0196) 0.392072310984062 131 0.0993251970747018 0.885335665058972 4589 0.266364917158117 2 1 1 -6.97048562056562 LTS-041 NA NA NA NA LTS-041 chr8 136533598 136561153 27556 * KHDRBS3 0.352 1 NA 1.21265058731688 9 0.257901682386482 3 3 0 -5.76657624109632 LTS-041 chr8 136561154 136659195 98042 * KHDRBS3 0.295 1 NA 1.00607186870751 29 0.26929819847974 3 3 0 -5.77147585502323 LTS-041 chr8 136659196 146279735 9620540 * c(MIR937, MIR939, FAM83H-AS1, CDC42P3, CCDC166, LOC100133669, LOC100288181, MIR1234, MIR4472-1, MIR4664, KHDRBS3, PTP4A3, MFSD3, RHPN1, TOP1MT, LYPD2, CYC1, CYP11B1, CYP11B2, COL22A1, EEF1D, ADCK5, TSNARE1, MAPK15, PUF60, DENND3, ZC3H3, ARC, BOP1, SCRIB, FBXL6, OPLAH, AGO2, GLI4, GML, GPR20, ZNF707, BREA2, FAM83H, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf31, ZFP41, GPT, COMMD5, GRINA, CPSF1, HSF1, GPIHBP1, NA NA NA NA NA NA NA NA NA LTS-041 NRBP2, ZNF517, WDR97, TMEM249, SPATC1, MROH5, MAFA, LY6E, LY6H, C8orf82, LRRC24, TONSL, CYHR1, FAM135B, VPS28, HGH1, KCNK9, THEM6, PLEC, CHRAC1, EXOSC4, LY6K, SLC39A4, SLURP1, SLC45A4, PTK2, ADGRB1, ZNF250, RPL8, LINC00051, MROH6, SCX, PYCRL, C8orf33, LYNX1, MIR661, TSTA3, MROH1, LINC01300, ZNF7, ZNF16, RHPN1-AS1, SLC52A2, GSDMD, ZNF696, PSCA, ARHGAP39, ZNF34, SHARPIN, EPPK1, SCRT1, TRAPPC9, MAF1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PARP10, TIGD5, PPP1R16A, LY6D, JRK, DGAT1, GPAA1, FOXH1, ZNF251, KIFC2, NAPRT, RECQL4, LRRC14, ZNF623) 0.248854364472804 204 0.105164574033295 1.07465875269965 8964 0.380986793239963 3 3 0 -7.28296696752251 LTS-041 NA NA NA NA LTS-041 chr8 146279736 146280905 1170 * C8orf33 NA 0 NA 0.962422810416746 19 0.190221231620091 2 NA NA -5.76474932516424 LTS-041 chr9 14732 116211 101480 * c(WASH1, FAM138C) 0.349 1 NA 0.947143900923966 3 0.261507807404164 2 2 0 -5.7764248526837 LTS-041 chr9 116212 8528310 8412099 * c(MIR4665, RCL1, DMRT2, INSL6, UHRF2, C9orf66, KIAA2026, KCNV2, GLIS3, DMRT1, FOXD4, KDM4C, MLANA, KANK1, RANBP6, GLDC, CD274, INSL4, JAK2, VLDLR-AS1, PLPP6, MIR101-2, AK3, SPATA6L, CDC37L1, PLGRKT, CBWD1, RIC1, PTPRD, DMRT3, RFX3, RLN1, RLN2, SLC1A1, SMARCA2, VLDLR, ERMP1, PDCD1LG2, DOCK8, GLIS3-AS1, TPD52L3, IL33, TMEM261, PUM3) 0.365297148279864 87 0.124093175795729 1.00070776739174 4203 0.308522581277972 3 2 1 -7.20994084317294 LTS-041 chr9 8528311 8528371 61 * PTPRD NA 0 NA 1.429 1 NA NA NA NA NA LTS-041 chr9 8528372 14617458 6089087 * c(LINC00583, LURAP1L, ZDHHC21, LINC01235, NFIB, PTPRD, TYRP1, MPDZ) 0.30713318613546 9 0.134145236383721 1.18084842718545 715 0.409650197026584 3 2 1 -6.94076526566895 LTS-041 chr9 14617459 14617477 19 * ZDHHC21 0.291 1 NA 0.377 1 NA NA NA NA NA LTS-041 chr9 14617478 33473957 18856480 * c(CDKN2B-AS1, MIR876, MIR873, TOPORS-AS1, C9orf92, IZUMO3, MIR3152, LOC100506422, MIR4473, MIR4474, TOPORS, CDKN2A, CDKN2B, RRAGA, PSIP1, PLIN2, TAF1L, LINC00032, LINGO2, TTC39B, SAXO1, FREM1, ELAVL2, C9orf72, CCDC171, DDX58, SLC24A2, B4GALT1, SPINK4, TUSC1, DNAJA1, IFNE, ZDHHC21, ACER2, IFNA1, IFNA2, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA21, IFNA22P, IFNB1, IFNW1, NA NA NA NA NA NA NA NA NA LTS-041 AQP3, AQP7, LOC389705, HACD4, LINC01242, TMEM215, MIR31, MLLT3, LINC01239, MTAP, NDUFB6, NFX1, ACO1, CDKN2A-AS1, CHMP5, EQTN, BNC2, HAUS6, APTX, CNTLN, FOCAD, SMU1, MIR31HG, DENND4C, KLHL9, IFNK, BAG1, MIR491, RPS6, DMRTA1, SH3GL2, LRRC19, NOL6, SNAPC3, SCARNA8, TEK, MOB3B, CAAP1, IFT74, ADAMTSL1, CER1, PLAA) 0.36603549128725 104 0.12596372630063 1.03052487842723 6492 0.28530337573675 3 2 1 -7.33688910150929 LTS-041 NA NA NA NA LTS-041 chr9 33473958 33524332 50375 * SUGT1P1 NA 0 NA 0.445 1 NA NA NA NA NA LTS-041 chr9 33524333 33750870 226538 * c(PTENP1, ANXA2P2, ANKRD18B, PRSS3) 0.146228069502955 7 0.0939280372970509 0.693364589450474 199 0.290091314000182 2 2 0 -6.93051246993783 LTS-041 chr9 33750871 33799218 48348 * PRSS3 0.406922473570102 10 0.0758738719484148 1.27140319386281 49 0.610585503687178 4 2 2 -6.75288058239298 LTS-041 chr9 33799219 33817578 18360 * c(UBE2R2, PRSS3) NA 0 NA 1.34275598439253 6 0.477408315805244 4 NA NA -5.76442429277441 LTS-041 chr9 33817579 33817617 39 * UBE2R2 NA 0 NA 0.202 1 NA NA NA NA NA LTS-041 chr9 33817618 33935736 118119 * c(SNORD121B, UBE2R2, UBAP2) 0.044 1 NA 0.742529943764354 182 0.169342704990057 2 2 0 -5.80407361777085 LTS-041 chr9 33935737 34723713 787977 * c(SNORD121A, SIGMAR1, CCL27, DCTN3, CNTFR, ARID3C, RPP25L, FAM219A, DCAF12, GALT, FAM205A, DNAI1, NUDT2, KIF24, IL11RA, ENHO, CNTFR-AS1, UBAP1, UBAP2, KIAA1161, CCL19, CCL21, C9orf24) 0.0751160053725157 15 0.063043295780417 0.796547102975335 1291 0.252204684444575 3 3 0 -8.12315407143329 LTS-041 chr9 34723714 34723744 31 * FAM205A 0.127 1 NA 0.465 1 NA NA NA NA NA LTS-041 chr9 34723745 34835113 111369 * c(FAM205A, FAM205BP) 0.25976477985167 14 0.127850380446128 0.624971249193217 212 0.417611584468665 1 1 0 -6.7442678806595 LTS-041 chr9 34835114 36163243 1328130 * c(MIR4667, CREB3, UNC13B, C9orf131, GLIPR2, LINC00961, ATP8B5P, CCDC107, FANCG, PHF24, DNAJB5, SPAG8, SIT1, STOML2, FAM205BP, FAM221B, OR13J1, NPR2, TMEM8B, OR2S2, GBA2, RMRP, HRCT1, MSMP, TESK1, TLN1, TPM2, FAM166B, VCP, CA9, FAM214B, RECK, HINT2, PIGO, ARHGEF39, LINC00950, CD72, RGP1, RUSC2) 0.227789544989141 45 0.123528980773376 0.787355079787795 2937 0.226563756851243 2 2 0 -6.85629193922132 LTS-041 chr9 36163244 37837585 1674342 * c(GNE, EBLN3P, MIR4540, MIR4475, MIR4476, CLTA, RNF38, GLIPR2, TRMT10B, FRMPD1, FBXO10, TOMM5, PAX5, EXOSC3, POLR1E, DCAF10, ZCCHC7, CCIN, GRHPR, MELK, ZBTB5) 0.183354992741447 26 0.153388857282599 0.731445221930604 1464 0.355592075168056 2 2 0 -6.89111057689945 LTS-041 chr9 37837586 37837647 62 * DCAF10 0.287 1 NA 1.779 1 NA NA NA NA NA LTS-041 chr9 37837648 38575637 737990 * c(FAM95C, ALDH1B1, ANKRD18A, IGFBPL1, SHB, DCAF10, SLC25A51) 0.231832390767871 10 0.11423275459439 0.847987219407716 305 0.239669165130621 2 2 0 -6.80712044622349 LTS-041 chr9 38575638 40498570 1922933 * c(FAM95C, FAM201A, ANKRD18A, FAM74A1, ZNF658B, NA, NA, CNTNAP3) NA 0 NA 0.835101087093515 186 0.195631437141139 2 NA NA -5.76719653184094 LTS-041 chr9 40498571 40498669 99 * c(ZNF658B, NA) NA 0 NA 0.748 1 NA NA NA NA NA LTS-041 chr9 40498670 43815927 3317258 * c(ZNF658, LOC286297, SPATA31A6, GLIDR, ZNF658B, AQP7P3, NA, LOC642929, LINC01189, NA, FGF7P3, SPATA31A3, FAM74A3, CNTNAP3B) NA 0 NA 0.424377738895446 38 0.19223570650722 0 NA NA -8.41322409072443 LTS-041 chr9 43815928 43816026 99 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 0.595 1 NA NA NA NA NA LTS-041 chr9 43816027 44175697 359671 * c(LOC286297, LINC01189, CNTNAP3B) NA 0 NA 1.14026298693626 39 0.370301072021971 3 NA NA -5.76600299764798 LTS-041 chr9 65602571 66457127 854557 * LOC286297 0.491 1 NA 1.05146579841716 3 0.288682062714907 3 3 0 -5.77929983798448 LTS-041 chr9 66457128 69256920 2799793 * c(FRG1HP, FAM27B, LOC286297, AQP7P1, LOC440896, PTGER4P2-CDK2AP2P2, PGM5P2, FRG1JP, CBWD6, FOXD4L6) 0.333516629884894 24 0.0945881135866661 1.134543525241 71 0.534407617281463 3 2 1 -6.80581418464609 LTS-041 chr9 70731671 79307101 8575431 * c(MAMDC2-AS1, SMC5-AS1, BANCR, FAM122A, TMC1, CARNMT1, C9orf57, C9orf85, C9orf135, TRPM6, PRUNE2, TMEM252, ALDH1A1, SMC5, TMEM2, FXN, MAMDC2, GCNT1, OSTF1, FOXD4L3, ANXA1, APBA1, PTAR1, MIR204, C9orf135-AS1, ABHD17B, PCSK5, PGM5, NMRK1, C9orf40, RFK, PRKACG, PGM5-AS1, RORB, RPSAP9, KLF9, ZFAND5, TRPM3, PIP5K1B, FAM189A2, TJP2, GDA) 0.361416783340741 58 0.111765997662593 0.608371510698027 3881 0.190318630909241 1 1 0 -7.33784916950548 LTS-041 chr9 79307102 79403521 96420 * c(PRUNE2, PCA3) NA 0 NA 0.484521693982176 166 0.121163685868642 1 NA NA -5.89348005946787 LTS-041 chr9 79403522 79438464 34943 * PRUNE2 NA 0 NA 0.556 1 NA NA NA NA NA LTS-041 chr9 79438465 84300873 4862409 * c(VPS13A-AS1, PRUNE2, VPS13A, GNAQ, PSAT1, FOXB2, TLE1, TLE4, CEP78, GNA14) 0.357757747581424 19 0.131176881610312 0.643951171331329 1434 0.192773345945467 1 1 0 -7.67555496862467 LTS-041 chr9 84300874 84302317 1444 * TLE1 NA 0 NA 1.175 1 NA NA NA NA NA LTS-041 chr9 84302318 90745534 6443217 * c(GAS1RR, CTSL, CTSLP8, RASEF, DAPK1, AGTPBP1, CDK20, FRMD3, GAS1, SPATA31E1, UBQLN1, HNRNPK, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, LOC389765, C9orf153, CTSL3P, LOC392364, C9orf170, MIR7-1, IDNK, LOC440173, SPATA31C1, NTRK2, LOC494127, GOLM1, KIF27, NAA35, SLC28A3, SPATA31C2, TLE1, ZCCHC6, RMI1, GKAP1, ISCA1, C9orf64) 0.327645325580301 37 0.130532370313649 0.739552497359442 2962 0.221067719457531 2 1 1 -8.00247532666464 LTS-041 chr9 90745535 92221427 1475893 * c(MIR3153, MIR4289, SEMA4D, GADD45G, SPIN1, CKS2, NXNL2, S1PR3, C9orf47, LOC286238, SHC3, SPATA31C2, SECISBP2) 0.309046949305298 14 0.122411484055098 0.837379891281308 889 0.234164114598486 2 1 1 -7.00498703041082 LTS-041 chr9 92221428 98232292 6010865 * c(SNORA84, LOC100128076, LOC100128361, UNQ6494, LOC100129316, LOC100132077, MIR2278, MIR3074, MIR4291, MIR4290, MIR3910-1, MIR3910-2, LOC100507346, MIR4670, SPTLC1, GADD45G, PTPDC1, ANKRD19P, MIRLET7DHG, FAM120AOS, LINC00475, ZNF169, ECM2, SUSD3, FANCC, FBP1, FAM120A, BICD2, MIR4290HG, IARS, LINC01501, CENPP, MIRLET7A1, MIRLET7D, MIRLET7F1, MIR23B, C9orf129, NFIL3, NINJ1, ROR2, OMD, OGN, PHF2, NUTM2F, DIRAS2, NA NA NA NA NA NA NA NA NA LTS-041 ASPN, AUH, NOL8, BARX1, PTCH1, IPPK, WNK2, SYK, ZNF484, CARD19, MFSD14B, C9orf3, FBP2, FGD3) 0.279904342512192 66 0.107245674653735 1.07031861189338 3679 1.24206202968956 4 3 1 -6.90707495150819 LTS-041 NA NA NA NA LTS-041 chr9 98232293 117074810 18842518 * c(FAM225B, LINC00476, LOC100132781, LINC00092, MIR548Q, MIR3134, CCDC180, LOC100499484, LOC100507346, MSANTD3-TMEFF1, MIR4668, NAMA, ANP32B, SMC2, ACTL7B, ACTL7A, SEC61B, SLC35D2, AKAP2, KIF12, PALM2, WDR31, ZNF618, GRIN3A, COL15A1, SLC31A1, SLC31A2, RNF183, OR13C5, OR13C8, OR13C3, OR13C4, OR13F1, CTSV, CYLC2, ZNF483, C9orf84, KIAA1958, TSTD2, ZNF782, LOC158434, LOC158435, ZNF883, ABCA1, LPAR1, AAED1, ZNF367, NA NA NA NA NA NA NA NA NA LTS-041 ANKS6, ALAD, FKTN, ZNF510, ALDOB, HABP4, PTGR1, FOXE1, ERP44, FKBP15, KIAA0368, TDRD7, SLC44A1, TMEM245, FRRS1L, CDC26, TXNDC8, C9orf43, AMBP, NIPSNAP3A, OR2K2, INVS, GNG10, FAM225A, LOC286359, OR13C9, OR13D1, NA, HSD17B3, GAS2L1P2, MURC, ERCC6L2, OR13C2, C9orf152, SNX30, MIR32, LOC441454, LOC441455, NUTM2G, STX17-AS1, PALM2-AKAP2, MUSK, NCBP1, TRMO, POLE3, NANS, MRPL50, EPB41L4B, BSPRY, DNAJC25, TEX10, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PLPPR1, FAM206A, STX17, TMEM38B, DNAJC25-GNG10, NIPSNAP3B, PPP3R2, TBC1D2, HEMGN, RNF20, BAAT, PTCH1, LOC100499484-C9ORF174, PTPN3, SLC46A2, INIP, ZNF462, RAD23B, RGS3, MIR455, SUSD1, LRRC37A5P, TAL2, TGFBR1, TMOD1, TXN, UGCG, CORO2A, XPA, ZFP37, ZNF189, GALNT12, SVEP1, NR4A3, HDHD3, FSD1L, HSDL2, MFSD14C, TMEM246, IKBKAP, COL27A1, ALG2, CDC14B, TMEFF1, CTNNAL1, PRPF4, MSANTD3, KLF4, GABBR2, TRIM14, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PTBP3) 0.281213540448542 261 0.131504165802237 0.920883796563427 13201 0.742191405843656 2 2 0 -7.15540960463792 LTS-041 NA NA NA NA LTS-041 chr9 117074811 117085362 10552 * ORM1 NA 0 NA 0.236 1 NA NA NA NA NA LTS-041 chr9 117085363 117092762 7400 * c(ORM1, ORM2) 0.441 1 NA 0.376294521152119 65 0.346109453563687 0 0 0 -5.76536805827217 LTS-041 chr9 117092763 140005032 22912270 * c(SNORA70C, ASTN2-AS1, LOC100128593, LOC100129034, LINC01502, CCDC183-AS1, RNU6ATAC, LOC100272217, LOC100288842, SLC25A25-AS1, MAN1B1-AS1, MIR181A2HG, MIR4292, MIR3154, SH2D3C, MIR3689A, MIR3911, MIR3689B, LOC100505478, LOC100506100, LINC00963, PPP1R26-AS1, MIR3689D1, MIR3689F, MIR4669, MIR4673, MIR3960, MIR4674, MIR4478, MIR3689C, MIR219B, MIR3689D2, MIR4672, MIR3689E, MIR4479, LOC101448202, RABEPK, CDK9, LAMC3, UBAC1, NA NA NA NA NA NA NA NA NA LTS-041 OLFM1, ZER1, AGPAT2, CEL, CELP, POMT1, ZBTB6, NEK6, SDCCAG3, USP20, SLC27A4, CNTRL, WDR5, SPACA9, ADAMTS13, CACFD1, SLC2A6, RPL35, MAN1B1, SLC25A25, COL5A1, NACC2, C9orf116, LCN8, FAM69B, CRAT, PTRH1, PIP5KL1, OR1L8, OR1N2, OR1N1, DBH-AS1, ASB6, DAB2IP, CAMSAP1, C9orf62, C9orf163, MAMDC4, LCN6, AK8, OR1Q1, TTLL11, TTC16, BRINP1, DBH, STKLD1, OLFML2A, QSOX2, SARDH, DNM1, TOR1A, MEGF9, ABCA2, ENDOG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ENG, AK1, TMEM268, NAIF1, STOM, FCN1, FCN2, DOLK, TRIM32, FNBP1, SETX, ZBTB43, PMPCA, ASTN2, EXOSC2, NCS1, ANGPTL2, NUP188, FPGS, RABGAP1, ABL1, NR5A1, FUT7, PSMD5-AS1, PHYHD1, MORN5, OR1L4, CIZ1, WHRN, GPSM1, DKFZP434A062, GAPVD1, PHF19, FBXW2, OR1J4, GBGT1, LHX6, NR6A1, LINC00094, OR1L3, OR1L1, OR1J2, SNORA65, SNORD62A, GGTA1P, SNORD36C, SNORD36B, SNORD36A, SNORD24, TRUB2, ST6GALNAC4, GLE1, TOR1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 TOR2A, ABO, GOLGA1, GOLGA2, GPR21, CRB2, SCAI, CFAP157, LCN12, C9orf142, FAM78A, RAPGEF1, NTMT1, PHPT1, GSN, PKN3, DPP7, SLC2A8, OBP2B, OBP2A, ST6GALNAC6, HSPA5, TNC, ADGRD2, QRFP, OR1J1, OR1B1, GLT6D1, SWI5, C9orf50, PTGES2-AS1, IER5L, CFAP77, LCN15, C9orf172, TMEM8C, OR1L6, OR5C1, OR1K1, LCN9, LCN1, LCN2, FAM102A, LMX1B, WDR38, LOC401557, LCNL1, C9orf139, SOHLH1, ZBTB34, MIR126, MIR147A, MIR181A2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MIR181B2, MIR199B, MIR219A2, C9orf106, LCN10, ASS1, NDUFA8, NOTCH1, ODF2, ORM1, ORM2, PAEP, DEC1, PAPPA, PDCL, PBX3, MRPS2, COQ4, CERCAM, EGFL7, PRRX2, SPOUT1, RAB14, C9orf78, FBXW5, RC3H2, TBC1D13, PTPA, STRBP, PPP6C, RABL6, CDK5RAP2, LRRC8A, INPP5E, NPDC1, BARHL1, SH3GLB2, PSMB7, REXO4, PSMD5, DOLPP1, PTGDS, PTGS1, KCNT1, ZBTB26, DENND1A, GPR107, LINC00474, RALGDS, PRDM12, RPL7A, RPL12, RXRA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 NRON, CARD9, SET, FAM163B, DDX31, FAM129B, SNAPC4, SPTAN1, SNORA17A, SNORA17B, STXBP1, SURF1, SURF2, SURF4, MED22, SURF6, SNORD90, MIR601, TLR4, TRAF1, TRAF2, TSC1, C5, TTF1, DNLZ, C8G, VAV2, ZNF79, C9orf16, MAPKAP1, PTGES2, BRD3, NUP214, LHX3, AKNA, MIR600HG, URM1, ARPC5L, GFI1B, AIF1L, UCK1, GARNL3, NTNG2, PRRC2B, PLPP7, ZDHHC12, MIGA2, FIBCD1, CCDC183, SNHG7, TMEM141, EDF1, DPM2, KYAT1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 FUBP3, MVB12B, WDR34, SAPCD2, C9orf69, CLIC3, LRSAM1, UAP1L1, MRRF, RBM18, GTF3C5, GTF3C4, LHX2, TNFSF8, MED27, PTGES, ENTPD2, ATP6V1G1, RALGPS1, ADAMTSL2, PPP1R26, SEC16A, TNFSF15) 0.310105328618927 502 0.119267914848221 0.92874061984271 25725 0.444635492934344 2 1 1 -7.59933020134083 LTS-041 NA NA NA NA LTS-041 chr9 140005033 140100317 95285 * c(MIR3621, NDOR1, TPRN, GRIN1, ANAPC2, DPP7, LRRC26, SSNA1, TMEM203) 0.23632044010124 10 0.121964703455093 0.78885667801039 472 0.240968671984649 2 2 0 -6.81730760219137 LTS-041 chr9 140100318 140100361 44 * NDOR1 NA 0 NA 0.95 1 NA NA NA NA NA LTS-041 chr9 140100362 141070283 969922 * c(STPG3-AS1, TUBB4B, NOXA1, ZMYND19, SLC34A3, NELFB, NSMF, NDOR1, PNPLA7, CYSRT1, ENTPD8, FAM166A, STPG3, NRARP, TOR4A, EXD3, EHMT1-IT1, TUBBP5, RNF224, MRPL41, MIR602, RNF208, CACNA1B, EHMT1, ARRDC1-AS1, ARRDC1, DPH7) 0.316034457009588 31 0.136710084894378 0.925554632227213 1799 0.261078826332055 2 1 1 -6.99182602707914 LTS-041 chr9 141070284 141071759 1476 * TUBBP5 NA 0 NA 0.640018499474362 5 0.207185424197746 1 NA NA -5.76459773482639 LTS-041 chr10 94832 94870 39 * TUBB8 0.429 1 NA 1.336 1 NA NA NA NA NA LTS-041 chr10 94871 3206075 3111205 * c(PITRM1-AS1, MIR5699, ADARB2, PITRM1, ZMYND11, WDR37, DIP2C, LARP4B, GTPBP4, LINC00700, IDI1, TUBB8, LINC00200, LINC00701, PRR26, PFKP, IDI2-AS1, ADARB2-AS1, IDI2) 0.399861814269246 46 0.0857068619398405 1.46323071676783 1506 0.400998773622472 4 2 2 -6.7910740516411 LTS-041 chr10 3206076 9449683 6243608 * c(LINC00704, MIR3155A, LINC00707, MIR3155B, NET1, PITRM1, AKR1C4, UCN3, KLF6, AKR1C1, AKR1C2, KIN, GATA3, GDI2, LINC00705, AKR1C8P, IL2RA, IL15RA, ITIH2, AKR1C6P, LOC399715, GATA3-AS1, PRKCQ-AS1, ATP5C1, CALML5, PFKFB3, ANKRD16, FAM208B, PRKCQ, SFMBT2, ASB13, TUBAL3, ITIH5, CALML3, AKR1E2, TAF3, FBXO18, RBM17, AKR1C3) 0.384593977237153 68 0.137404457188026 1.25952734840436 2890 0.409195874416146 4 2 2 -6.87907234166126 LTS-041 chr10 9449684 9449896 213 * character(0) NA 0 NA 0.826 1 NA NA NA NA NA LTS-041 chr10 9449897 17636309 8186413 * c(ST8SIA6-AS1, PPIAP30, MIR1265, MIR4480, OPTN, RPP38, CELF2, NUDT5, TRDMT1, SFTA1P, PROSER2-AS1, UCMA, C10orf111, FAM171A1, BEND7, SEPHS1, LINC00710, PROSER2, UPF2, NA, ST8SIA6, C1QL3, ACBD7, CELF2-AS2, CDNF, HSPA14, PHYH, SEC61A2, OLAH, MCM10, DHTKD1, FRMD4A, CAMK1D, RSU1, DCLRE1C, MEIG1, VIM, SUV39H2, ECHDC3, FAM188A, CUBN, FAM107B, CCDC3, ITGA8, PRPF18, CDC123, HACD1, PTER, NMT2, USP6NL) 0.337119045834552 87 0.12435897328635 1.1008437973036 4285 0.335449699922253 3 2 1 -6.76499581064423 LTS-041 chr10 17636310 17839549 203240 * c(TMEM236, STAM, HACD1) 0.039 1 NA 1.13662358038563 134 0.254518167830084 3 3 0 -5.76595178757569 LTS-041 chr10 17839550 17953020 113471 * c(MRC1, NA, TMEM236) 0 1 NA 0.917859056108984 60 0.504953173417727 2 2 0 -5.76633300107278 LTS-041 chr10 17953021 18196475 243455 * c(MRC1, NA, TMEM236) 0 1 NA 0.59349859494075 88 0.750496871984777 1 1 0 -5.76451313955621 LTS-041 chr10 18196476 18198200 1725 * MRC1 NA 0 NA 2.024 1 NA NA NA NA NA LTS-041 chr10 18198201 24835505 6637305 * c(NEBL-AS1, SLC39A12-AS1, LOC100130992, MIR1915, LOC100499489, COMMD3-BMI1, MIR4675, NEBL, ARMC3, OTUD1, SLC39A12, NSUN6, ARL5B, MSRB2, COMMD3, PTF1A, C10orf67, EBLN1, C10orf113, SKIDA1, CASC10, MRC1, PIP4K2A, KIAA1217, DNAJC1, BMI1, MIR603, CACNB2, MLLT10, PLXDC2, SPAG6) 0.207313774464738 64 0.128412080624826 1.02085075004736 2513 0.427424627451772 3 3 0 -6.99692088123331 LTS-041 chr10 24835506 24873369 37864 * c(KIAA1217, ARHGAP21) 0.395 1 NA 1.05990807649201 53 0.345614295029709 3 3 0 -5.76473386955525 LTS-041 chr10 24873370 25464559 591190 * c(GPR158-AS1, ENKUR, PRTFDC1, GPR158, ARHGAP21, THNSL1) 0.340339404205652 6 0.0689504653114587 1.03183461765023 480 0.261381150042613 3 2 1 -6.83695251859253 LTS-041 chr10 25464560 38671982 13207423 * c(ABI1, MIR938, GPR158-AS1, LOC100129055, MTRNR2L7, ZNF33BP1, LINC00838, LINC00837, MIR5586, YME1L1, LYZL2, MAP3K8, CREM, MPP7, HSD17B7P2, ZNF25, GJD4, CCNY, WAC-AS1, ZNF438, ZEB1-AS1, NA, ANKRD26, RAB18, PDSS1, GAD2, BAMBI, MKX, ITGB1, PTCHD3, KIF5B, LINC00202-1, LRRC37A6P, PTCHD3P1, WAC, MYO3A, APBB1IP, ARMC4, MTPAP, PARD3, ZNF248, GPR158, KIAA1462, LINC00264, SVIL, MIR604, ZEB1, LINC00202-2, ZNF33A, NA NA NA NA NA NA NA NA NA LTS-041 ZNF37A, CCDC7, EPC1, FZD8, CUL2, LYZL1, MASTL, NRP1, ANKRD30A, ACBD5, ARHGAP12) 0.384805148812221 158 0.108870540024403 1.26678359386821 5376 0.553258011760524 4 2 2 -6.88016111087843 LTS-041 NA NA NA NA LTS-041 chr10 38671983 38740384 68402 * c(SEPT7P9, LINC00999) NA 0 NA 1.24894793237685 9 0.175902671952418 4 NA NA -5.77502508609389 LTS-041 chr10 42379879 47756145 5376267 * c(ZNF37BP, C10orf142, RSU1P2, MIR3156-1, LINC00840, MIR5100, HNRNPA3P1, C10orf10, AGAP4, MARCH8, C10orf25, TMEM72-AS1, ZNF485, RASGEF1A, ALOX5, NA, FAM21C, PTPN20, LINC00841, HNRNPF, ANKRD30BP3, ZNF32-AS1, ZNF32-AS3, ZNF32-AS2, GLUD1P7, FAM35BP, LINC00619, FAM35DP, LOC441666, FXYD4, NPY4R, CSGALNACT2, RET, CXCL12, ZNF487, TMEM72, LINC00842, NA, NA, HNRNPA1P33, ZNF22, ZNF32, ZNF33B, OR13A1, ZNF239, SYT15, RASSF4, NA NA NA NA NA NA NA NA NA LTS-041 LINC00839, ZFAND4, GPRIN2, BMS1) 0.393346220783377 97 0.0946414898336778 1.11512422128043 2125 0.38810337866057 3 2 1 -6.78582794258234 LTS-041 NA NA NA NA LTS-041 chr10 47756146 47903104 146959 * c(NA, PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.73 1 NA NA NA NA NA LTS-041 chr10 47903105 48029377 126273 * c(PTPN20, GLUD1P7, NA, NA, NA) 0.350289991347818 2 0.108187337521542 0.585843218339189 41 0.306650541949707 2 1 1 -6.93109268402718 LTS-041 chr10 48029378 48032978 3601 * c(PTPN20, GLUD1P7, NA, NA, NA) NA 0 NA 0.945 1 NA NA NA NA NA LTS-041 chr10 48032979 51050172 3017194 * c(MIR4294, FAM170B-AS1, NA, CHAT, C10orf71, ZNF488, FRMPD2, CTSLP2, FAM170B, C10orf128, VSTM4, ERCC6, PTPN20, GDF2, GDF10, C10orf53, NA, GLUD1P7, LRRC18, NA, OGDHL, MAPK8, WDFY4, ARHGAP22, RBP3, DRGX, NA, SLC18A3, NA, FRMPD2B, PARG) 0.377630741486164 64 0.122106104653497 0.983978553006454 2240 0.364007599991922 3 2 1 -6.91599012935059 LTS-041 chr10 51050173 51391503 341331 * c(NA, NA, PARGP1, PARG) NA 0 NA 0.516684424640439 39 0.471970699758469 1 NA NA -5.77733017893584 LTS-041 chr10 51391504 51537126 145623 * c(NA, AGAP7P, PARG) NA 0 NA 1.102 1 NA NA NA NA NA LTS-041 chr10 51537127 63851519 12314393 * c(TIMM23, MTRNR2L5, MIR3924, PRKG1-AS1, MRLN, MIR548AV, ZWINT, C10orf107, TMEM26, SLC16A9, FAM13C, DKK1, CSTF2T, IPMK, SGMS1, LINC01553, ANK3, A1CF, NA, FAM21A, AGAP6, MBL2, MSMB, NA, CISD1, PRKG1, ASAH2, PCDH15, ASAH2B, MIR605, TFAM, FAM133CP, UBE2D1, BICC1, CCDC6, NCOA4, ARID5B, PHYHIPL, PARG, CDK1, RHOBTB1) 0.372195050842566 64 0.0963513007939308 1.04048575935927 3318 0.312313002622982 3 2 1 -6.99473215361577 LTS-041 chr10 63851520 71168986 7317467 * c(MIR1296, DNA2, EGR2, STOX1, RTKN2, ATOH7, REEP3, JMJD1C, ZNF365, SIRT1, HERC4, KIF1BP, CTNNA3, NRBF2, ANXA2P3, HK1, HNRNPH3, LRRTM3, SRGN, RUFY2, CCAR1, DNAJC12, PBLD, SUPV3L1, TACR2, SNORD98, DDX50, HKDC1, TET1, SLC25A16, ARID5B, MYPN, ADO, JMJD1C-AS1, DDX21, VPS26A) 0.374060640846616 63 0.0973781881159088 0.970195166552772 3566 0.299199380716324 3 2 1 -7.46632712476784 LTS-041 chr10 71168987 71174636 5650 * TACR2 NA 0 NA 1.046 1 NA NA NA NA NA LTS-041 chr10 71174637 76995140 5820504 * c(MIR1256, MIR4676, MICU1, ECD, CHCHD1, MSS51, CFAP70, COMTD1, ANAPC16, COL13A1, ADK, ADAMTS14, SAMD8, USP54, FUT11, OIT3, EIF4EBP2, UNC5B, C10orf35, TYSND1, TBATA, ZSWIM8, DNAJC9, KAT6B, TSPAN15, NUDT13, AP3M1, PALD1, GLUD1P3, ANXA7, FAM149B1, DUPD1, C10orf105, C10orf55, DNAJC9-AS1, NODAL, P4HA1, NEUROG3, PCBD1, ASCC1, MRPS16, DUSP13, PLAU, DDIT4, PPA1, DNAJB12, LRRC20, SLC29A3, PPP3CB, H2AFY2, PRF1, NA NA NA NA NA NA NA NA NA LTS-041 PSAP, SAR1A, MYOZ1, CDH23, NPFFR1, C10orf54, TACR2, UNC5B-AS1, AGAP5, BMS1P4, VCL, VDAC2, SYNPO2L, CAMK2G, PLA2G12B, AIFM2, NDST2, SGPL1, MCU, CHST3, SEC24C, SPOCK2) 0.369470219335012 107 0.103117455666821 1.0136964687924 6274 0.292452740345671 3 2 1 -7.02054695665371 LTS-041 NA NA NA NA LTS-041 chr10 76995141 76995350 210 * COMTD1 NA 0 NA 1.325 1 NA NA NA NA NA LTS-041 chr10 76995351 81074352 4079002 * c(DLG5-AS1, ZNF503-AS2, LINC00856, POLR3A, COMTD1, ZNF503-AS1, ZMIZ1-AS1, KCNMA1, LINC00595, ZMIZ1, RPS24, C10orf11, ZNF503, DLG5) 0.365990061131939 12 0.123046277325388 1.1077109730867 1164 0.308087929190827 3 2 1 -6.73324378482541 LTS-041 chr10 81074353 85992233 4917881 * c(BMS1P21, PPIF, NRG3, DYDC1, EIF5AL1, TMEM254-AS1, PLAC9, ZCCHC24, LRIT1, GHITM, ANXA11, LRIT2, SH2D4B, C10orf99, MAT1A, LINC00857, ZMIZ1, LOC642361, SFTPD, BEND3P3, SFTPA1, SFTPA2, TMEM254, TSPAN14, FAM213A, DYDC2, MBL1P, CDHR1) 0.337021782889247 51 0.11162090253332 0.956317373527181 1815 0.375772032126012 3 2 1 -7.17761255738137 LTS-041 chr10 85992234 90673070 4680837 * c(KLLN, GRID1-AS1, MIR4678, ADIRF, LDB3, ANKRD22, AGAP11, LIPJ, CFL1P1, LINC00858, WAPL, LRIT1, GLUD1, GRID1, LIPM, LINC00863, MIR346, CCSER2, FAM35A, RNLS, PTEN, STAMBPL1, RGR, FAM25A, LIPK, LIPN, BMPR1A, SNCG, NUTM2A, NUTM2D, NUTM2A-AS1, LINC00864, MMRN2, ATAD1, LIPF, PAPSS2, OPN4, MINPP1) 0.377786572240421 56 0.13481862274538 1.02048413641738 2278 0.313298768372914 3 2 1 -6.91202523993333 LTS-041 chr10 90673071 90734906 61836 * c(FAS, STAMBPL1, ACTA2) 0.287 1 NA 1.05986734243428 113 0.42435791871155 3 3 0 -5.76476148012079 LTS-041 chr10 90734907 90985063 250157 * c(FAS-AS1, MIR4679-1, MIR4679-2, FAS, LIPA, STAMBPL1, ACTA2, CH25H) 0.41305233825432 3 0.0282901631902917 1.06176289030794 166 0.289588053840875 2 1 1 -7.10739968107184 LTS-041 chr10 90985064 90986656 1593 * LIPA NA 0 NA 0.546 1 NA NA NA NA NA LTS-041 chr10 90986657 94695669 3709013 * c(HECTD2-AS1, MARK2P9, LINC00502, RPP30, NUDT9P1, HECTD2, FGFBP3, CPEB3, IFIT5, ANKRD1, FLJ37201, HHEX, HTR7, IDE, IFIT2, IFIT1, IFIT3, KIF11, SLC16A12, LIPA, MIR107, IFIT1B, PANK1, EXOC6, MARCH5, PPP1R3C, LINC00865, TNKS2, PCGF5, BTAF1, KIF20B) 0.231610457174796 49 0.125073617777474 0.751096236042421 2615 0.319934489832569 2 2 0 -7.0715566905405 LTS-041 chr10 94695670 94700482 4813 * EXOC6 NA 0 NA 0.562 1 NA NA NA NA NA LTS-041 chr10 94700483 96106240 1405758 * c(PLCE1-AS1, FRA10AC1, CYP26A1, SLC35G1, MYOF, PIPSL, FFAR4, CYP26C1, PLCE1, PDE6C, EXOC6, CEP55, RBP4, NOC3L, LGI1) 0.270247848213609 28 0.119929432513744 0.704062844620479 1403 0.20925636512911 1 1 0 -7.36419183887942 LTS-041 chr10 96106241 96112156 5916 * NOC3L 0 1 NA 0.721330114758926 19 0.298726086664357 2 2 0 -5.76537872486482 LTS-041 chr10 96112157 98105281 1993125 * c(C10orf131, MIR3157, SORBS1, ACSM6, CYP2C19, CYP2C8, CYP2C9, CYP2C18, DNTT, TBC1D12, TCTN3, BLNK, HELLS, CC2D2B, CCNJ, ALDH18A1, NOC3L, ENTPD1-AS1, PDLIM1, OPALIN, ENTPD1, ZNF518A) 0.12906015694215 43 0.138096636682878 0.714167368233985 1835 0.287951184379816 2 2 0 -7.22673179214614 LTS-041 chr10 98105282 104162365 6057084 * c(TLX1NB, DNMBP-AS1, FRAT1, KCNIP2-AS1, MIR1287, MIR3158-1, MIR3158-2, SLIT1-AS1, ARHGAP19-SLIT1, MIR4685, MIR5692C2, NPM3, ERLIN1, LBX1, MGEA5, HOGA1, CHUK, PIK3AP1, MORN4, ZFYVE27, ABCC2, COX15, CPN1, NKX2-3, FGF8, PPRC1, RRP12, DNMBP, FRAT2, DPCD, SEC31B, C10orf12, ANKRD2, CNNM1, R3HCC1L, POLL, GOT1, BLOC1S2, KCNIP2, TLX1, HPS1, LBX1-AS1, GOLGA7B, C10orf62, NDUFB8, NFKB2, PAX2, EXOSC1, CUTC, PGAM1, NA NA NA NA NA NA NA NA NA LTS-041 PITX3, CRTAC1, CWF19L1, PI4K2A, HIF1AN, SLF2, C10orf2, TM9SF3, ENTPD7, SEMA4G, AVPI1, HPSE2, SCD, MMS19, SFRP5, FBXW4, SLIT1, SNORA12, MIR608, TLL2, WNT8B, C10orf76, HPS6, PDZD7, UBTD1, KAZALD1, SFXN3, SLC25A28, ELOVL3, MARVELD1, LOXL4, ZDHHC16, LZTS2, LCOR, MRPL43, PYROXD2, ARHGAP19, GBF1, LDB1, BTRC, OLMALINC, PKD2L1, NOLC1, OPALIN) 0.126495568954518 107 0.12398393391975 0.766371239523495 7653 0.23961011246919 2 2 0 -7.42166079982565 LTS-041 NA NA NA NA LTS-041 chr10 104162366 104162770 405 * PSD 0.307 1 NA 0.788724645489868 9 0.213891587284566 2 2 0 -5.76443374314603 LTS-041 chr10 104162771 108380213 4217443 * c(MIR936, MIR1307, RPARP-AS1, SH3PXD2A-AS1, BORCS7-ASMT, MIR4482, ACTR1A, SORCS1, SFXN2, BORCS7, GSTO2, SFR1, CALHM3, COL17A1, CYP17A1, CFAP58, NT5C2, PDCD11, SORCS3, CALHM1, ARL3, CALHM2, SUFU, CNNM2, WBP1L, PSD, AS3MT, MIR146B, TAF5, MIR609, RPEL1, CUEDC2, FBXL15, MFSD13A, C10orf95, OBFC1, CFAP43, TRIM8, PCGF6, USMG5, ITPRIP, INA, NEURL1, GSTO1, SH3PXD2A, SLK) 0.217643386783054 77 0.128384662899452 0.756244235927206 3717 0.21944029725 2 2 0 -7.32311435300913 LTS-041 chr10 108380214 108924301 544088 * SORCS1 NA 0 NA 0.656956440082532 105 0.167999480528588 1 NA NA -5.93050910288627 LTS-041 chr10 109654604 111440719 1786116 * character(0) 0.493 1 NA 1.56313913735537 7 0.37299138251248 5 5 0 -5.77685604872479 LTS-041 chr10 111440720 113921455 2480736 * c(ADD3-AS1, MIR4680, SMNDC1, ADD3, ADRA2A, DUSP5, PDCD4, RBM20, PDCD4-AS1, MXI1, GPAM, RPL13AP6, XPNPEP1, SHOC2, SMC3, BBIP1) 0.430367677841278 15 0.120867499274836 1.20318432991117 1260 0.315601316701025 3 2 1 -7.00754510060826 LTS-041 chr10 113921456 120070516 6149061 * c(MIR2110, MIR4295, MIR3663, MIR4483, VAX1, PDZD8, PNLIPRP3, TRUB1, VTI1A, C10orf82, ADRB1, EMX2OS, EMX2, RAB11FIP2, CASC2, HSPA12A, ATRNL1, GFRA1, HABP2, KCNK18, VWA2, NHLRC2, CCDC172, ENO4, GUCY2GP, ABLIM1, NRAP, ACSL5, PNLIP, PNLIPRP1, PNLIPRP2, CCDC186, TDRD1, GPAM, SHTN1, FAM160B1, FAM204A, ZDHHC6, SLC18A2, TCF7L2, TECTB, PLEKHS1, CASP7, AFAP1L2, DCLRE1A) 0.380016084295993 102 0.143608156999337 1.31854686013574 4429 0.42866604768069 4 2 2 -6.76304124149351 LTS-041 chr10 120070517 120070790 274 * FAM204A NA 0 NA 1.127 1 NA NA NA NA NA LTS-041 chr10 120070791 121563790 1493000 * c(MIR4681, PRDX3, SFXN4, CACUL1, INPP5F, PRLHR, GRK5, NANOS1, RGS10, FAM204A, SNORA19, TIAL1, EIF3A, BAG3) 0.427711098143399 15 0.0335594710214285 1.18283027058583 1007 0.611753847938501 4 2 2 -7.35660546716517 LTS-041 chr10 121563791 123923124 2359334 * c(MIR4682, TACC2, ATE1, SEC23IP, PLPP4, FGFR2, INPP5F, WDR11-AS1, NSMCE4A, WDR11, MCMBP) 0.409710116591896 39 0.0828543019862266 1.37414971843396 1148 0.362472036985554 4 2 2 -6.7570349664735 LTS-041 chr10 123923125 129924069 6000945 * c(TEX36-AS1, MIR4296, MIR3941, FAM24B-CUZD1, MIR4484, LINC00601, FANK1-AS1, TACC2, C10orf90, BTBD16, FAM24A, PSTK, MMP21, CLRN3, CPXM2, CTBP2, DMBT1, DOCK1, FAM24B, FAM175B, EDRF1, LOC283038, GPR26, HMX2, HMX3, ACADSB, DMBT1P1, ARMS2, TEX36, NKX1-2, C10orf120, LOC399815, METTL10, FLJ37035, FOXI2, MKI67, OAT, CUZD1, CHST15, ZRANB1, DHX32, HTRA1, BCCIP, PTPRE, PLEKHA1, NPS, LHPP, FAM196A, IKZF5, UROS, NA NA NA NA NA NA NA NA NA LTS-041 C10orf88, ADAM12, BUB3, FANK1, FAM53B) 0.361672341784795 114 0.125109899522567 1.21797486637593 4313 0.437940625640339 3 2 1 -6.90786116489127 LTS-041 NA NA NA NA LTS-041 chr10 131265430 134693010 3427581 * c(MIR378C, MIR4297, GLRX3, DPYSL4, CTAGE7P, C10orf91, PWWP2B, EBF3, TCERG1L, JAKMIP3, STK32C, INPP5A, LINC00959, LINC01164, MGMT, CFAP46, PPP2R2D, BNIP3, LRRC27, NKX6-2) 0.341494962594157 57 0.14179644947144 1.40730645545108 1365 0.50425647462611 4 3 1 -6.77547356739344 LTS-041 chr10 134693011 134756359 63349 * CFAP46 0.375877861459132 9 0.0532470656468504 0.733635694247889 176 0.644621182399944 3 2 1 -6.77025217956357 LTS-041 chr10 134756360 134884461 128102 * c(LINC01168, ADGRA1) NA 0 NA 1.947 1 NA NA NA NA NA LTS-041 chr10 134884462 135473026 588565 * c(MIR3944, ADAM8, TUBGCP2, PRAP1, ZNF511, CYP2E1, ECHS1, PAOX, VENTX, FUOM, SPRNP1, FRG2B, SPRN, CALY, MIR202, SCART1, UTF1, ADGRA1, KNDC1, MTG1, SYCE1) 0.375434450062001 45 0.122367396793344 1.32551265152894 1408 0.504734001180791 4 2 2 -6.7469562322996 LTS-041 chr10 135473027 135473116 90 * character(0) NA 0 NA 1.642 1 NA NA NA NA NA LTS-041 chr11 193025 193096 72 * SCGB1C1 0.216 1 NA 0.204 1 NA NA NA NA NA LTS-041 chr11 193097 900929 707833 * c(MIR210HG, IFITM3, DEAF1, IFITM2, PKP3, ODF3, LRRC56, LOC143666, SCGB1C1, NLRP6, LOC171391, DRD4, SIRT3, LMNTD2, CRACR2B, TMEM80, HRAS, ANO9, B4GALNT4, PDDC1, IRF7, IFITM5, MIR210, BET1L, CEND1, CDHR5, POLR2L, PIDD1, PNPLA2, PSMD13, PHRF1, SIGIRR, RNH1, RIC8A, RPLP2, SNORA52, SCT, EPS8L2, CHID1, TALDO1, TSPAN4, SLC25A22, PGGHG, RASSF7, PTDSS2, IFITM1, CD151) 0.143442145611429 140 0.142160602836975 0.766358693861073 2759 0.2911281039922 2 2 0 -6.84622866476387 LTS-041 chr11 900930 910819 9890 * CHID1 0.456 1 NA 0.76760935679414 29 0.176536129237356 2 2 0 -5.76608791608358 LTS-041 chr11 910820 1281134 370315 * c(AP2A2, MUC2, MUC6, CHID1, MUC5B) 0.300420862813343 120 0.103656752838219 0.842820177200292 1229 0.46381484006271 1 1 0 -6.90567606946592 LTS-041 chr11 1281135 1284227 3093 * MUC5B 0.233 1 NA 0.801128681029869 35 0.16187151248636 2 2 0 -5.76459535278253 LTS-041 chr11 1284228 3249051 1964824 * c(MIR675, FAM99B, MRPL23-AS1, MIR4298, MIR4686, TSPAN32, TSSC4, CDKN1C, KCNQ1OT1, OSBPL5, MRGPRE, CTSD, DUSP8, TOLLIP-AS1, H19, MRGPRG-AS1, C11orf21, TRPM5, KRTAP5-AS1, IGF2, INS, KCNQ1, MRGPRG, KRTAP5-1, KRTAP5-3, FAM99A, IFITM10, LSP1, ASCL2, KRTAP5-5, KRTAP5-2, KRTAP5-6, NAP1L4, SLC22A18, SLC22A18AS, IGF2-AS, TOLLIP, KCNQ1DN, MRPL23, MIR483, SNORA54, TH, TNNI2, TNNT3, INS-IGF2, PHLDA2, MOB2, CARS, SYT8, NA NA NA NA NA NA NA NA NA LTS-041 BRSK2, CD81) 0.221344930643666 72 0.132949105273839 0.761013208974376 2387 0.223228802173566 2 2 0 -7.00196852982457 LTS-041 NA NA NA NA LTS-041 chr11 3249052 3249119 68 * MRGPRE NA 0 NA 0.604 1 NA NA NA NA NA LTS-041 chr11 3249120 4968371 1719252 * c(LOC100506082, MIR4687, OR7E12P, MRGPRE, ART5, OR51A7, OR51S1, OR51F2, OR52R1, OR52M1, OR52K2, OR52B4, C11orf40, OR52I2, OR51E1, OR51F1, PGAP2, OR52K1, OR52I1, OR51D1, RHOG, OR51T1, OR51A4, ART1, NUP98, TRIM68, CHRNA10, RRM1, TSSC2, TRIM21, STIM1, TRPC2, ZNF195, OR51G1, OR51G2, OR51E2) 0.191709814359745 33 0.123295999160925 0.694894543540517 1627 0.274057916655478 2 2 0 -7.20725284127915 LTS-041 chr11 4968372 5009631 41260 * c(OR51A2, MMP26) NA 0 NA 0.292649275101572 39 0.205648593794255 0 NA NA -5.76921215279201 LTS-041 chr11 5009632 5010830 1199 * MMP26 NA 0 NA 0.618 1 NA NA NA NA NA LTS-041 chr11 5010831 7506883 2496053 * c(TRIM22, TRIM3, PRKCDBP, TRIM6, OR52E2, OR52J3, OR51L1, TPP1, OR2D3, OR2D2, OR52W1, OR56A4, OR56A1, CNGA4, SYT9, UBQLNL, OR10A5, OR2AG1, DNHD1, C11orf42, OR56B4, RRP8, OR52A1, ARFIP2, OR52B2, TIMM10B, RBMXL2, OR51B5, OR51V1, OR10A4, OLFML1, HBB, HBBP1, HBD, HBE1, HBG1, HBG2, APBB1, HPX, NLRP14, OR52L1, OR2AG2, OR52B6, OR10A2, ILK, OR56B1, GVINP1, OR52A5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, NA NA NA NA NA NA NA NA NA LTS-041 OR52D1, OR52H1, OR52N4, OR52N5, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR56A5, TRIM6-TRIM34, UBQLN3, TRIM34, MMP26, MRPL17, SMPD1, TAF10, ZNF214, ZNF215, OR51B4, OR51B2, OR52N1, FAM160A2, TRIM5, OR6A2, DCHS1, CCKBR) 0.183813292923718 139 0.133502839417835 0.708368797643101 4212 0.327684864868326 2 2 0 -7.13096814543555 LTS-041 NA NA NA NA LTS-041 chr11 7506884 18034670 10527787 * c(MRVI1-AS1, MIR4299, MTRNR2L8, LINC00958, USH1C, MIR5691, MRVI1, SPON1, IPO7, OR7E14P, LYVE1, C11orf58, OR5P2, OR5P3, CYP2R1, COPB1, ADM, PLEKHA7, EIF4G2, RRAS2, SWAP70, DENND5A, SERGEF, OR5E1P, OR10A3, DKK3, AMPD3, KRT8P41, SBF2-AS1, CSNK2A3, OLFML1, LOC283299, NLRP10, OTOG, OVCH2, GALNT18, NCR3LG1, KCNC1, KCNJ11, INSC, OR10A6, LMO1, ARNTL, TMEM41B, LOC440028, MYOD1, NUCB2, TMEM9B-AS1, RNF141, PDE3B, NA NA NA NA NA NA NA NA NA LTS-041 CYB5R2, PIK3C2A, USP47, SOX6, PARVA, AKIP1, C11orf16, TMEM9B, NRIP3, ASCL3, PSMA1, PTH, SCUBE2, ZBED5, RPL27A, SNORA3A, RPS13, LOC644656, RASSF10, STK33, ST5, SNORA23, SNORA3B, ABCC8, SNORD97, TEAD1, TUB, ZBED5-AS1, WEE1, ZNF143, CALCA, RIC3, CALCB, SBF2, FAR1, BTBD10, PPFIBP2, MICALCL, EIF3F, MICAL2, CTR9, TRIM66) 0.192339870494243 186 0.128294267237873 0.743181926527259 8342 0.326368722358261 2 2 0 -7.55448468224186 LTS-041 NA NA NA NA LTS-041 chr11 18034671 19258986 1224316 * c(SPTY2D1-AS1, SAA2-SAA4, HPS5, SAAL1, MRGPRX2, MRGPRX3, MRGPRX4, SPTY2D1, TMEM86A, LDHAL6A, MRGPRX1, IGSF22, GTF2H1, LDHA, LDHC, LOC494141, ZDHHC13, UEVLD, SAA1, SAA2, SAA3P, SAA4, TPH1, TSG101, E2F8, CSRP3, PTPN5) 0.225785524391321 43 0.137563246301881 0.684188828443169 1744 0.280249514988227 1 1 0 -7.04721483741934 LTS-041 chr11 19258987 19259387 401 * E2F8 NA 0 NA 1.021 1 NA NA NA NA NA LTS-041 chr11 19259388 33903020 14643633 * c(LOC100126784, C11orf91, CCDC179, DCDC5, MIR4486, MIR4694, NAV2-AS5, HIPK3, LINC00678, PRMT3, EIF3M, HTATIP2, DBX1, DNAJC24, ARL14EP, MUC15, CSTF3, SLC5A12, METTL15, IMMP1L, ANO5, FANCF, FSHB, KIAA1549L, SVIP, GAS2, FBXO3, ELP4, LINC00294, LUZP2, CSTF3-AS1, DCDC1, KCNA4, FIBIN, NAV2-AS4, LMO2, DKFZp686K1684, NELL1, CCDC73, BDNF-AS, PAX6, WT1-AS, LIN7C, TCP11L1, LGR4, SLC17A6, RCN1, BDNF, ANO3, MIR610, NA NA NA NA NA NA NA NA NA LTS-041 MPPED2, WT1, PRRG4, E2F8, QSER1, KIF18A, BBOX1, NAV2, CCDC34, SLC6A5, DEPDC7, CD59) 0.197443460493105 132 0.126878164569243 0.743705486759611 5787 0.239599831883318 2 2 0 -8.50406017973214 LTS-041 NA NA NA NA LTS-041 chr11 33903021 34073833 170813 * c(LMO2, CAPRIN1) NA 0 NA 1.314 1 NA NA NA NA NA LTS-041 chr11 34073834 34673308 599475 * c(ELF5, ABTB2, EHF, CAPRIN1, NAT10, CAT) 0.324906973670298 16 0.135616616484363 1.09192397674781 657 0.421974060756061 3 2 1 -6.78703478029377 LTS-041 chr11 34673309 34678339 5031 * EHF NA 0 NA 0.68 1 NA NA NA NA NA LTS-041 chr11 34678340 34682597 4258 * EHF 0 1 NA 0.67938895143128 56 0.270783423306639 1 1 0 -5.76524787471101 LTS-041 chr11 34682598 34903818 221221 * c(EHF, APIP) NA 0 NA 1.143 1 NA NA NA NA NA LTS-041 chr11 34903819 40136202 5232384 * c(MIR3973, MIR1343, C11orf74, LDLRAD3, FJX1, PAMR1, COMMD9, APIP, TRIM44, LRRC4C, RAG1, RAG2, SLC1A2, TRAF6, PRR5L, PDHX, CD44) 0.356015932795836 32 0.110333872895247 1.04629920159325 1487 0.404311541362015 3 2 1 -6.79348121603743 LTS-041 chr11 40136203 47447967 7311765 * c(MIR670, MIR3160-2, MIR3160-1, LOC100507205, ALKBH3-AS1, LOC100507384, LRP4-AS1, MIR4688, NR1H3, MIR5582, CHRM4, LARGE2, CRY2, C11orf94, DDB2, EXT2, F2, ALKBH3, LOC221122, HARBI1, PACSIN3, CD82, DKFZp779M0652, C11orf96, ACCSL, ARHGAP1, HNRNPKP3, LRP4, MIR129-2, MDK, MYBPC3, HSD17B12, PHF21A, ACP2, SLC35C1, AMBRA1, TTC17, PRDM11, PSMC3, SYT13, LRRC4C, ALX4, SPI1, SNORD67, SEC14L1P1, C11orf49, ZNF408, ARFGAP2, NA NA NA NA NA NA NA NA NA LTS-041 ACCS, DGKZ, CHST1, API5, MADD, TSPAN18, CREB3L1, SLC39A13, PEX16, MAPK8IP1, TP53I11, ATG13, CKAP5) 0.292915971322743 63 0.134048964695726 0.909792217152016 4535 0.247251170940523 2 1 1 -7.44028076296893 LTS-041 NA NA NA NA LTS-041 chr11 47447968 47459266 11299 * PSMC3 NA 0 NA 0.654 1 NA NA NA NA NA LTS-041 chr11 47459267 48238302 779036 * c(CELF1, C1QTNF4, PTPMT1, NUP160, FNBP4, MTCH2, FAM180B, NDUFS3, KBTBD4, PTPRJ, RAPSN, AGBL2) 0.293392134647027 10 0.104652015959772 0.813367890357213 1098 0.181026884776012 2 1 1 -7.25321033178635 LTS-041 chr11 48238303 48238549 247 * OR4B1 0.209 1 NA 1.04961436431745 5 2.25472765539433 3 3 0 -5.76441021022074 LTS-041 chr11 48238550 48346419 107870 * c(OR4X2, OR4B1, OR4S1, OR4X1) 0.331087867789798 5 0.0976718997460375 0.927020864235287 95 0.913622474047123 4 3 1 -6.78085917226323 LTS-041 chr11 48346420 48346423 4 * character(0) 0.418 1 NA 2.576 1 NA NA NA NA NA LTS-041 chr11 48346424 48387960 41537 * c(OR4C3, OR4C45) 0.346317309911525 102 0.0886849091122701 1.63845451843221 172 1.14752364178954 6 4 2 -6.73565821391699 LTS-041 chr11 48387961 48387985 25 * character(0) NA 0 NA 0.908 1 NA NA NA NA NA LTS-041 chr11 48387986 49145838 757853 * c(TRIM49B, OR4A47, TRIM64C) 0.38343548850773 20 0.0530533743160206 0.968225530627518 134 0.500732077966015 2 1 1 -6.78793487048291 LTS-041 chr11 49145839 51527703 2381865 * c(OR4C46, FOLH1, OR4C13, OR4C12, LOC440040, LOC441601, LOC646813, OR4A5) NA 0 NA 1.00136189202133 347 0.44513587454935 3 NA NA -5.83300135559624 LTS-041 chr11 55035776 55035862 87 * TRIM48 0.448 1 NA 0.991827739648492 3 0.261958648136177 3 3 0 -5.76441884799452 LTS-041 chr11 55035863 55340582 304720 * c(OR4C16, TRIM51HP, TRIM48, OR4C15, OR4A16, OR4A15) 0 1 NA 0.881244126688387 88 0.312099756436315 2 2 0 -5.76806919437712 LTS-041 chr11 55340583 55370727 30145 * character(0) NA 0 NA 0.171 1 NA NA NA NA NA LTS-041 chr11 55370728 55419421 48694 * c(OR4C11, OR4S2, OR4P4) NA 0 NA 0.133184860321583 67 0.0335637535750688 0 NA NA -11.8731594449014 LTS-041 chr11 55419422 55432532 13111 * character(0) NA 0 NA 0.917 1 NA NA NA NA NA LTS-041 chr11 55432533 56468133 1035601 * c(OR5I1, OR8I2, OR4C6, OR5D14, OR5L1, OR5D18, OR7E5P, OR5AS1, OR8K5, OR5T2, OR8H1, OR8K3, OR8J1, OR5R1, OR5M3, OR5M8, OR5M11, OR5AR1, OR5L2, OR10AG1, OR5J2, OR5F1, OR5AP2, OR5D13, OR5D16, OR5W2, OR8H2, OR8H3, OR5T3, OR5T1, OR8K1, OR5M9, OR5M10, OR5M1, OR8U8, OR9G9, OR8J3, TRIM51) 0.327593282711027 21 0.112254833388356 0.989369687023138 871 0.403552727286449 3 2 1 -6.84722156134381 LTS-041 chr11 56468134 56468198 65 * c(OR8U8, OR9G9) 0.136 1 NA 2.04 1 NA NA NA NA NA LTS-041 chr11 56468199 56468833 635 * c(OR8U8, OR9G9) 0.256458852122599 26 0.139260337276848 1.90157067528063 40 0.9905278491147 9 7 2 -6.73307472967513 LTS-041 chr11 56468834 58190063 1721230 * c(TMX2-CTNND1, PRG3, CLP1, CTNND1, APLNR, OR5AK4P, LRRC55, SMTNL1, YPEL4, MED19, OR6Q1, OR9I1, OR9Q1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR5B17, ZDHHC5, TIMM10, SELENOH, OR9G4, SLC43A3, RTN4RL2, OR5AK2, OR5B2, MIR130A, OR5B3, P2RX3, OR8U8, TMX2, PRG2, BTBD18, SSRP1, SERPING1, OR10W1, SLC43A1, TNKS1BP1, UBE2L6) 0.335627225118089 34 0.157319358536736 1.01003228403403 1941 0.320117773788527 3 2 1 -6.83442604073388 LTS-041 chr11 58190064 60620994 2430931 * c(MIR3162, GLYAT, PTGDR2, CNTF, OR5B21, GLYATL2, MPEG1, OR5A2, OR5A1, OR4D6, OR4D11, PATL1, OOSP2, MS4A15, MS4A2, DTX4, MS4A6E, GIF, LOC283194, LINC00301, MS4A10, FAM111B, ZFP91-CNTF, OR5B2, OR5B12, OR5AN1, OR4D10, OR4D9, OR10V1, OSBP, MS4A13, MS4A4A, MS4A12, MRPL16, MS4A7, FAM111A, MS4A6A, MS4A5, STX3, TCN1, CCDC86, ZFP91, OR10V2P, MS4A8, MS4A14, GLYATL1, MS4A1, MS4A3, LPXN) 0.386487926415476 39 0.0539510199218447 1.11073814806402 2521 0.324665836728405 3 2 1 -6.82144664673766 LTS-041 chr11 60620995 60621093 99 * PTGDR2 NA 0 NA 1.127 1 NA NA NA NA NA LTS-041 chr11 60621094 61524974 903881 * c(MIR4488, PTGDR2, RPLP0P2, DDB1, VWCE, CYB561A3, PPP1R32, ZP1, TKFC, DKFZP434K028, PRPF19, LRRC10B, TMEM216, SLC15A3, TMEM138, PGA5, SDHAF2, TMEM132A, VPS37C, PGA3, PGA4, MYRF, DAGLA, TMEM109, CPSF7, SYT7, CD5, CD6) 0.337638252462089 22 0.133231408553345 1.19907416544013 1912 0.334694894589299 3 2 1 -6.79194716804084 LTS-041 chr11 61524975 61543499 18525 * c(DKFZP434K028, MYRF) 0.462 1 NA 1.16422747507431 57 0.258288842073849 3 3 0 -5.76487133770659 LTS-041 chr11 61543500 62752499 1209000 * c(MIR1908, HNRNPUL2-BSCL2, NXF1, TAF6L, SCGB1D2, SCGB1D1, CHRM1, EEF1G, LRRN4CL, HNRNPUL2, FEN1, GANAB, SNHG1, FTH1, EML3, B3GAT3, BSCL2, GNG3, TTC9C, INCENP, TMEM179B, FADS1, FADS3, SCGB1D4, SCGB2A1, SCGB2A2, UBXN1, POLR2G, WDR74, RAB3IL1, ROM1, TUT1, SLC3A2, STX5, SNORA57, MIR611, SCGB1A1, BEST1, MYRF, TMEM258, METTL12, AHNAK, TMEM223, LBHD1, UQCC3, ZBTB3, ASRGL1, INTS5, MTA2, SNORD29, SNORD31, NA NA NA NA NA NA NA NA NA LTS-041 SNORD30, SNORD28, SNORD27, SNORD26, SNORD25, SNORD22, SLC22A6, FADS2) 0.393375175850448 37 0.119160130230865 1.18963048962472 3350 0.398212382490035 3 2 1 -6.79035951710689 LTS-041 NA NA NA NA LTS-041 chr11 62752500 62760274 7775 * SLC22A8 NA 0 NA 1.071 1 NA NA NA NA NA LTS-041 chr11 62760275 63449253 688979 * c(RTN3, PLA2G16, SLC22A9, HRASLS5, ATL3, SLC22A24, SLC22A25, SLC22A10, HRASLS2, RARRES3, LGALS12, SLC22A8) 0.280778690049325 18 0.129104709998477 0.981444826553284 873 0.341704242773497 3 2 1 -7.03090281444707 LTS-041 chr11 63449254 63472270 23017 * RTN3 NA 0 NA 1.314 1 NA NA NA NA NA LTS-041 chr11 63472271 63756224 283954 * c(RTN3, COX8A, C11orf84, MARK2, RCOR2, OTUB1, C11orf95, NAA40) 0.343562343076597 9 0.0952641065669542 1.2832655597732 594 0.363601973962727 3 2 1 -6.79402958603694 LTS-041 chr11 63756225 63763965 7741 * OTUB1 NA 0 NA 1.079 1 NA NA NA NA NA LTS-041 chr11 63763966 66999400 3235435 * c(NAALADL1, TMEM262, MIR1237, RBM14-RBM4, ARL2-SNX15, MIR4489, MIR4690, DPP3, KCNK7, LOC100996455, RASGRP2, RBM14, CDC42EP2, KAT5, SSSCA1, DRAP1, CFL1, YIF1A, EHD1, STIP1, SF3B2, CCDC85B, B4GAT1, CDCA5, BATF2, SLC22A12, CATSPER1, CST6, CTSW, GPHA2, ESRRA, FAU, TIGD3, FKBP2, KDM2A, ATG2A, FAM89B, POLA2, FLRT1, PELI3, SSSCA1-AS1, EHBP1L1, SNX32, TSGA10IP, CNIH2, ZDHHC24, C11orf86, TMEM151A, PRDX5, BRMS1, NA NA NA NA NA NA NA NA NA LTS-041 TEX40, PPP1R14B, NPAS4, MAJIN, SLC25A45, NEAT1, CCDC88B, MACROD1, SAC3D1, RHOD, EFEMP2, SLC29A2, DNAJC4, MALAT1, SPDYC, PCNX3, ARL2, LTBP3, MIR192, MIR194-2, MEN1, MAP3K11, SLC22A20, OVOL1, KCNK4, PC, TRMT112, PLCB3, CCDC87, PPP2R5B, CDC42BPG, OTUB1, PACS1, SLC22A11, GPR137, CD248, BAD, SCYL1, BBS1, PYGM, MAP4K2, RBM4, RELA, DPF2, KLC2, SIPA1, MRPL11, SPTBN2, TM7SF2, VPS51, MRPL49, ZNHIT2, VEGFB, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SF1, ZFPL1, LRFN4, C11orf80, MUS81, FOSL1, RAB1B, CAPN1, C11orf68, FERMT3, TRPT1, RBM4B, FRMD8, RNASEH2C, EIF1AD, NUDT22, SYVN1, CTSF, BANF1, ACTN3, GAL3ST3, RPS6KA4, SART1, AP5B1, FIBP, SYT12, NRXN2, RIN1, CCS, RCE1) 0.360099662904319 188 0.110068243914185 1.04359493826612 9627 0.287353646155672 3 2 1 -6.80939497687055 LTS-041 NA NA NA NA LTS-041 chr11 66999401 70279766 3280366 * c(LOC100130987, MIR548K, MIR4691, CDK2AP2, TCIRG1, CHKA, MRGPRD, MRGPRF, CPT1A, GRK2, CTTN, MRPL21, TPCN2, ORAOV1, ALDH3B1, ALDH3B2, FGF3, FGF4, KDM2A, CLCF1, NUDT8, MYEOV, GSTP1, ANKRD13D, TBX10, IGHMBP2, TBC1D10C, GPR152, DOC2GP, LRP5, NDUFV1, NDUFS8, GAL, KMT5B, CABP2, C11orf24, SSH3, PPP1CA, ANO1, PPP6R3, CABP4, CORO1B, CARNS1, POLD4, PTPRCAP, RAD9A, CCND1, RPS6KB2, FAM86C2P, TMEM134, UNC93B1, NA NA NA NA NA NA NA NA NA LTS-041 PPFIA1, FADD, AIP, ACY3, PITPNM1, TESMIN, FGF19) 0.397776288425995 89 0.0754257967618531 1.17076093168747 3912 0.28487324746198 3 2 1 -6.92086831683707 LTS-041 NA NA NA NA LTS-041 chr11 70279767 70666765 386999 * c(SHANK2-AS1, CTTN, SHANK2) 0.338 1 NA 1.11583135682675 273 0.359737309552807 3 3 0 -5.76459530401789 LTS-041 chr11 70666766 71961332 1294567 * c(LOC100129216, LOC100133315, MIR3165, MIR3664, IL18BP, DHCR7, SHANK2-AS3, LRTOMT, SHANK2, FOLR1, FOLR2, FOLR3, DEFB108B, ANAPC15, ALG1L9P, INPPL1, KRTAP5-9, KRTAP5-10, FLJ42102, PHOX2A, KRTAP5-7, KRTAP5-11, NUMA1, LAMTOR1, NADSYN1, FAM86C1, RNF121, KRTAP5-8) 0.265386975007212 33 0.097356226552208 1.22131934446645 1403 0.408857925963745 4 3 1 -6.89844637561334 LTS-041 chr11 71961333 72003452 42120 * character(0) NA 0 NA 1.276 1 NA NA NA NA NA LTS-041 chr11 72003453 73988230 1984778 * c(MIR4692, STARD10, ARAP1, FAM168A, C2CD3, P4HA3, DNAJB13, MIR139, P2RY2, P2RY6, COA4, PDE2A, PPME1, MRPL48, PLEKHB1, RAB6A, UCP2, UCP3, PAAF1, CLPB, RELT, ATG16L2, ARHGEF17, FCHSD2) 0.270400727766911 42 0.132178547460724 1.39711590082595 2285 0.439109665637194 4 3 1 -6.78188541478212 LTS-041 chr11 73988231 74417629 429399 * c(KCNE3, POLD3, CHRDL2, P4HA3, PGM2L1, LIPT2) 0.271858470942548 18 0.0981836514485212 1.57371897680394 537 0.434593557462473 5 4 1 -6.74348089158866 LTS-041 chr11 74417630 74419339 1710 * CHRDL2 NA 0 NA 1.398 1 NA NA NA NA NA LTS-041 chr11 74419340 78369155 3949816 * c(KCTD21-AS1, TPBGL, NDUFC2-KCTD14, MIR4696, NEU3, SLCO2B1, SNORD15B, CLNS1A, XRRA1, B3GNT6, GDPD4, RNF169, CHRDL2, TSKU, TENM4, LRRC32, AQP11, KLHL35, LOC283214, KCTD21, AAMDC, OR2AT4, GUCY2EP, ARRB1, MAP6, MIR326, MYO7A, NDUFC2, OMP, PAK1, RSF1, ACER3, THAP12, EMSY, USP35, SNORD15A, RPS3, KCTD14, THRSP, CAPN5, UVRAG, WNT11, ALG8, NARS2, MOGAT2, GDPD5, DGAT2, SERPINH1, INTS4, SPCS2, GAB2) 0.305901829942362 85 0.120206424927445 1.39379229230332 4333 0.38619976752838 4 3 1 -6.73955104557393 LTS-041 chr11 78369156 102953532 24584377 * c(NAALAD2, MIR708, WTAPP1, MIR1304, SNORA70E, MIR4300, MIR1260B, MIR3920, RAB30-AS1, LOC100506368, MIR4490, MIR5579, GRM5-AS1, JRKL-AS1, LOC101054525, YAP1, CTSC, ME3, GPR83, PRSS23, TMEM123, SLC36A4, FAT3, TRIM64, FAM76B, SESN3, PIWIL4, ARHGAP42, AMOTL1, DEUP1, DLG2, FOLH1B, DDIAS, CCDC83, FAM181B, CCDC89, ENDOD1, RAB38, PANX1, FUT4, ANGPTL5, TENM4, CHORDC1, RAB30, C11orf54, GRM5, BIRC2, BIRC3, ANKRD42, NA NA NA NA NA NA NA NA NA LTS-041 HEPHL1, VSTM5, TRIM77, IZUMO1R, KDM4E, MMP1, MMP3, MMP7, MMP8, MMP10, MMP12, MMP13, MRE11A, MTNR1B, NOX4, HIKESHI, CWC15, PCF11, PGR, CNTN5, SYTL2, ANKRD49, PRCP, KDM4D, TMEM126B, SMCO4, TRIM49, CEP126, CREBZF, CCDC90B, CCDC81, SCARNA9, MMP27, TRIM64B, TRIM49C, UBTFL1, C11orf97, TMEM135, SNORA8, SNORA18, SNORA40, SNORD5, TRPC6, TYR, TAF1D, CCDC82, PICALM, FZD4, TMEM133, TMEM126A, DCUN1D5, MAML2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 C11orf70, CEP295, OR7E2P, JRKL, EED, MTMR2, MMP20, MED17, CEP57) 0.285010164330272 181 0.106616792265004 1.49773415782162 9766 0.438989232658162 5 4 1 -7.25173704325212 LTS-041 NA NA NA NA LTS-041 chr11 102953533 104035111 1081579 * c(MIR4693, DDI1, DYNC2H1, PDGFD, DCUN1D5) 0.177946344870826 12 0.0936791752674407 1.72200113823928 606 0.57436461453517 7 6 1 -6.85469068192247 LTS-041 chr11 104035112 105010578 975467 * c(CASP12, CARD16, CARD17, CARD18, LOC643733, CASP1, CASP4, CASP5) 0.278613956786465 16 0.0370420931733976 1.39166426320917 311 0.319835934402582 5 4 1 -7.01958939795372 LTS-041 chr11 105010579 105481416 470838 * GRIA4 NA 0 NA 2.168 1 NA NA NA NA NA LTS-041 chr11 105481417 124190223 18708807 * c(LOC100131626, LOC100132078, NCAM1-AS1, BACE1-AS, MIR4301, USP2-AS1, MIR3656, TMPRSS4-AS1, HSPB2-C11orf52, FXYD6-FXYD2, MIR4493, MIR4491, MIR4492, LOC100652768, RBM7, MPZL2, HYOU1, ATP5L, TREH, APOA5, COLCA2, PIH1D2, NXPE1, NXPE2, JAML, CRYAB, KBTBD3, CWF19L2, KDELC2, LAYN, TTC36, C11orf65, DDX6, DDX10, DLAT, DPAGT1, DRD2, MPZL3, OR10G8, OR10G9, OR10S1, OR6T1, OR4D5, TBCEL, TMEM136, OAF, FDX1, CEP164, NA NA NA NA NA NA NA NA NA LTS-041 EXPH5, PHLDB1, SIK2, ARHGEF12, SIK3, BACE1, TRIM29, CADM1, SLC37A4, ANKK1, RNF214, POU2F3, HINFP, REXO2, OR8G2, TIMM8B, LINC00900, BCL9L, FOXR1, CCDC153, OR8D1, OR8D2, GRIA4, GRIK4, GUCY1A2, H2AFX, HMBS, HSPA8, HSPB2, APOA1, HTR3A, APOA4, CCDC84, TMEM225, OR8D4, C11orf53, LOC341056, APOC3, PLET1, IL10RA, IL18, ARCN1, ACAT1, BSX, OR6X1, OR6M1, OR10G4, OR10G7, C11orf87, COLCA1, C11orf88, MIR100HG, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 VWA5A, MIRLET7A2, MIR100, MIR125B1, MIR34B, MIR34C, BLID, MCAM, KMT2A, NCAM1, ATM, NNMT, FXYD2, NPAT, PAFAH1B2, SIDT2, TRAPPC4, FXYD6, C11orf71, POU2AF1, SLC35F2, RAB39A, BTG4, NXPE4, TTC12, PPP2R1B, C11orf57, ELMOD1, SCN3B, VPS11, TEX12, CRTAM, TMPRSS4, IFT46, DSCAML1, GRAMD1B, ARHGAP20, USP28, PTS, NECTIN1, RDX, AASDHPPT, RPS25, SC5D, SCN2B, SCN4B, SDHD, ABCG4, CXCR5, LOC643923, CLDN25, C11orf1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC649133, RPL23AP64, SLN, SORL1, TAGLN, TECTA, THY1, UPK2, ZBTB16, ZNF202, RNF26, NLRX1, ALG9, CLMP, PDZD3, C11orf63, CUL5, TMPRSS5, MFRP, BCO2, TMPRSS13, MSANTD4, BUD13, TMEM25, UBASH3B, DIXDC1, ZC3H12C, CBL, ZPR1, USP2, CD3D, PCSK7, CD3E, CD3G, HTR3B, ALKBH8, ZW10, FDXACB1, UBE4A, C2CD2L) 0.260887251488323 292 0.0919416205646488 1.58346502052659 16564 0.57251386450016 5 4 1 -6.75855204600859 LTS-041 NA NA NA NA LTS-041 chr11 124190224 124252206 61983 * character(0) NA 0 NA 0.965 1 NA NA NA NA NA LTS-041 chr11 124252207 125619215 1367009 * c(CHEK1, PANX3, PATE1, TMEM218, SLC37A2, OR8B12, HEPACAM, VSIG2, OR8B8, OR8B2, OR8B4, STT3A, OR8B3, OR8A1, NRGN, SPA17, SIAE, ROBO4, ACRV1, PKNOX2, HEPN1, ROBO3, MSANTD2, CCDC15, TBRG1, ESAM, EI24, FEZ1) 0.317048348155409 25 0.151262487087843 1.03888431361612 1989 0.332889135118438 3 2 1 -6.8220842883416 LTS-041 chr11 125619216 125826702 207487 * c(PATE3, PATE1, HYLS1, DDX25, PATE2, PATE4, PUS3) 0.401 1 NA 1.0096317816147 348 1.32075954329623 3 3 0 -5.76498628619245 LTS-041 chr11 125826703 128329607 2502905 * c(MIR3167, KIRREL3-AS2, TIRAP, ETS1, KIRREL3-AS3, DCPS, ST3GAL4-AS1, CDON, FOXRED1, ST3GAL4, SRPRA, FAM118B, KIRREL3, RPUSD4) 0.37594129536449 37 0.0923060664848736 1.03468494922703 950 0.296532641316606 3 2 1 -6.81249177378779 LTS-041 chr11 128329608 129733779 1404172 * c(SENCR, TMEM45B, ETS1, C11orf45, FLI1, KCNJ1, KCNJ5, NFRKB, TP53AIP1, BARX2, ARHGAP32) 0.398277874310344 40 0.140719923233605 0.815851883158915 1018 0.366408144263451 2 1 1 -6.74059864230964 LTS-041 chr11 129733780 130584417 850638 * c(ADAMTS8, ADAMTS15, C11orf44, ZBTB44, APLP2, LINC00167, NFRKB, PRDM10, ST14) 0.295072807555255 12 0.142901746283623 0.923422623827996 1123 0.282179758031054 2 1 1 -7.05611580811554 LTS-041 chr11 130584418 130584422 5 * C11orf44 NA 0 NA 0.815 1 NA NA NA NA NA LTS-041 chr11 130584423 134856661 4272239 * c(LOC100128239, VPS26B, GLB1L3, SPATA19, IGSF9B, NCAPD3, ACAD8, B3GAT1, C11orf44, MIR4697HG, LOC283177, THYN1, SNX19, OPCML, NTM, JAM3, GLB1L2) 0.339964252693153 44 0.150251543842522 0.85073256327041 1635 0.301976533225026 2 1 1 -6.80976999965279 LTS-041 chr11 134856662 134856681 20 * character(0) NA 0 NA 0.797 1 NA NA NA NA NA LTS-041 chr12 90923 176139 85217 * c(LOC100288778, IQSEC3, FAM138D) 0.419 1 NA 1.61992328309182 5 0.316272034805482 5 5 0 -5.76442073962786 LTS-041 chr12 176140 3725942 3549803 * c(LINC00940, LINC00942, MIR3649, LOC100507424, CACNA1C-AS1, CACNA1C-AS4, CACNA1C-IT3, TSPAN9, FBXL14, DCP1B, FKBP4, FOXM1, ERC1, B4GALNT3, LOC283440, IQSEC3, NINJ2, ITFG2, PRMT8, LOC574538, RAD52, KDM5A, WNK1, SLC6A12, SLC6A13, LRTM2, TEAD4, TULP3, CACNA1C, ADIPOR2, WNT5B, RHNO1, NRIP2, CCDC77, CRACR2A, CACNA2D4) 0.379873863885107 75 0.13974381322024 1.94479706738346 3546 1.02730228250616 6 3 3 -6.74024146738893 LTS-041 chr12 3725943 3726116 174 * CRACR2A NA 0 NA 1.671 1 NA NA NA NA NA LTS-041 chr12 3726117 5603608 1877492 * c(AKAP3, RAD51AP1, FGF6, GALNT8, KCNA1, KCNA5, KCNA6, NDUFA9, NTF3, PARP11, C12orf4, TIGAR, FGF23, CRACR2A, DYRK4, CCND2) 0.403657957185469 42 0.0811232841060935 1.75496872054831 1384 0.55276709902745 6 3 3 -6.76272795891495 LTS-041 chr12 5603609 6153534 549926 * c(NTF3, ANO2, VWF) 0.350437719345862 15 0.186493916663201 2.07668843875789 408 0.87087262612724 6 4 2 -6.73697350861942 LTS-041 chr12 6153535 6167196 13662 * VWF 0.477 1 NA 2.02671982335241 27 0.70578418127733 7 7 0 -5.76446758471872 LTS-041 chr12 6167197 6232100 64904 * VWF NA 0 NA 2.08369451854422 68 0.371902054980452 7 NA NA -5.76468709422169 LTS-041 chr12 6232101 7342636 1110536 * c(LPCAT3, LRRC23, EMG1, P3H3, CHD4, C12orf57, PHB2, ZNF384, DSTNP2, ATN1, PIANP, ENO2, IFFO1, GAPDH, GPR162, GNB3, C1RL-AS1, RPL13P5, LAG3, LTBR, MIR141, MIR200C, NOP2, COPS7A, ING4, MRPL51, C1RL, TAPBPL, PLEKHG6, LPAR5, PTMS, PTPN6, PEX5, SCNN1A, SCARNA12, SCARNA11, CD27-AS1, VAMP1, SCARNA10, TNFRSF1A, C1R, C1S, TPI1, VWF, USP5, MLF2, CDCA3, RBP5, ACRBP, SPSB2, CD4, CD9, CD27, CLSTN3, NCAPD2 NA NA NA NA NA NA NA NA NA LTS-041 ) 0.439809365487804 76 0.0660942694652142 1.81995684320463 3461 0.442835759038128 6 3 3 -7.02169766809753 LTS-041 NA NA NA NA LTS-041 chr12 7342637 7354404 11768 * PEX5 0 1 NA 1.94791446368292 39 1.46899877495174 6 6 0 -5.76441325238898 LTS-041 chr12 7354405 7355396 992 * PEX5 NA 0 NA 1.95419558242059 15 0.521168988223315 6 NA NA -5.76441267853993 LTS-041 chr12 7355397 7355926 530 * PEX5 NA 0 NA 1.49 1 NA NA NA NA NA LTS-041 chr12 7355927 10573124 3217198 * c(KLRF2, LINC00987, KLRC4-KLRK1, KLRG1, TMEM52B, SLC2A14, A2ML1, A2M-AS1, CLEC12A, CLECL1, CLEC4C, PHC1, A2M, KLRK1, GABARAPL1, LINC00612, NECAP1, CLEC4E, CD163L1, CLEC9A, CLEC2D, A2MP1, CLEC4D, APOBEC1, ACSM4, DPPA3, NANOGNB, LOC374443, KLRB1, KLRC3, KLRD1, CLEC2A, CLEC12B, LINC00937, M6PR, ZNF705A, FAM66C, DDX12P, OLR1, CLEC4A, CLEC1B, CLEC1A, KLRF1, FAM90A1, FOXJ2, AICDA, RIMKLB, PEX5, PZP, POU5F1P3, NA NA NA NA NA NA NA NA NA LTS-041 LOC642846, CLEC7A, SLC2A3, FAM86FP, C3AR1, NANOG, MFAP5, KLRC4, CD163, CLEC6A, GDF3, CD69, CLEC2B) 0.376121600111153 92 0.142518046903763 1.58826704121886 3804 0.546959136109504 5 3 2 -6.73907984998946 LTS-041 NA NA NA NA LTS-041 chr12 10573125 10587618 14494 * c(KLRC2, KLRC3) NA 0 NA 2.51206796613392 52 0.885719789564365 8 NA NA -5.76442865058532 LTS-041 chr12 10587619 10587873 255 * c(KLRC2, KLRC3) NA 0 NA 1.876 1 NA NA NA NA NA LTS-041 chr12 10587874 11034970 447097 * c(PRH1-PRR4, KLRA1P, PRR4, KLRC1, KLRC2, KLRC3, TAS2R9, TAS2R8, TAS2R7, TAS2R10, MAGOHB, STYK1, PRB4, PRH1, YBX3) 0.365570611059513 7 0.225367424865432 1.53258495910837 471 0.608306290501462 5 3 2 -6.7400205639417 LTS-041 chr12 11034971 11035049 79 * c(PRH1-PRR4, PRB4, PRH1) NA 0 NA 1.793 1 NA NA NA NA NA LTS-041 chr12 11035050 11461553 426504 * c(SMIM10L1, PRH1-PRR4, TAS2R43, TAS2R31, TAS2R46, TAS2R30, TAS2R19, TAS2R20, TAS2R50, TAS2R42, TAS2R13, TAS2R14, PRB3, PRB4, PRH1, PRH2) 0.296721197602972 75 0.102166701791508 1.84471571624903 420 0.832624784534906 7 5 2 -6.76123014903735 LTS-041 chr12 11461554 11904767 443214 * c(ETV6, LINC01252, PRB1, PRB4, PRB2) 0.488 1 NA 1.64417464749802 53 0.311188975342083 5 5 0 -5.76470172638742 LTS-041 chr12 11904768 22824386 10919619 * c(LOC100506314, LOC100506393, ABCC9, MIR3974, CDKN1B, SLCO1B1, STRAP, BORCS5, HIST4H4, ERP27, AEBP2, CREBL2, C12orf60, EMP1, EPS8, ETV6, SLCO1B3, LINC01559, GPR19, GRIN2B, GUCY2C, GYS2, IAPP, SLCO1B7, KCNJ8, RPL13AP20, LDHB, ARHGDIB, LRP6, ART4, MGP, MGST1, SMCO3, LOH12CR2, HEBP1, GOLT1B, DERA, DDX47, PDE3A, PDE6H, WBP11, PIK3C2G, SLCO1C1, PLEKHA5, MANSC1, ETNK1, GPRC5D, ATF7IP, H2AFJ, LMO3, CMAS, NA NA NA NA NA NA NA NA NA LTS-041 FAM234B, PTPRO, RECQL, ST8SIA1, SLCO1A2, MIR613, MIR614, SKP1P2, SLC15A5, BCL2L14, RERGL, PLBD1, PYROXD1, SPX, DUSP16, APOLD1, GSG1, RERG, PLCZ1, GPRC5A, HTR7P1, CAPZA3, C2CD5) 0.393482420094524 86 0.125715171628427 1.69582836839155 5853 0.478784414122173 5 3 2 -6.78407649872541 LTS-041 NA NA NA NA LTS-041 chr12 22824387 28732833 5908447 * c(MIR920, MANSC4, MIR4302, RASSF8-AS1, RASSF8, LINC00477, ETFRF1, LMNTD1, C12orf77, STK38L, FGFR1OP2, SMCO2, ITPR2, KRAS, REP15, LRMP, TM7SF3, CASC1, CCDC91, ETNK1, ASUN, ARNTL2, PTHLH, KLHL42, BCAT1, MRPS35, SOX5, C12orf71, BHLHE41, SSPN, PPFIBP1, MED21) 0.365480662600614 84 0.0915205083155726 1.17844791615035 3051 0.800347783070131 3 2 1 -6.75615157439057 LTS-041 chr12 29423311 34180172 4756862 * c(LINC00941, DDX11-AS1, DNM1L, RNU6-78P, DENND5B-AS1, OVCH1-AS1, IPO8, FGD4, DENND5B, DDX11, AMN1, ETFBKMT, OVCH1, SYT10, H3F3C, TSPAN11, YARS2, ERGIC2, PKP2, KIAA1551, FAR2, FAM60A, BICD1, CAPRIN2, FLJ13224, TMTC1, ALG10) 0.364746334849188 85 0.12550678444282 1.70826027933532 2851 0.515382277484237 5 3 2 -6.77358537221181 LTS-041 chr12 34180173 34182671 2499 * ALG10 NA 0 NA 1.8043736159032 15 0.459614072062742 6 NA NA -5.76442493708999 LTS-041 chr12 38710341 38710459 119 * character(0) 0.445 1 NA 0.646736514096593 5 0.39091789419263 1 1 0 -5.76441532396021 LTS-041 chr12 38710460 40149408 1438949 * c(SLC2A13, ALG10B, CPNE8, ABCD2, C12orf40, KIF21A) 0.364440555798728 11 0.181471961270254 1.20217243116747 655 0.420847065093564 3 2 1 -6.76781815527191 LTS-041 chr12 40149409 41303808 1154400 * c(SLC2A13, LRRK2, CNTN1, C12orf40) 0.303398838784916 21 0.173067465512868 1.0182709157106 1142 0.3512769492644 3 2 1 -6.8466371056465 LTS-041 chr12 41303809 42599840 1296032 * c(YAF2, CNTN1, GXYLT1, PDZRN4) 0.292128913933597 15 0.0862875591098906 1.26379883883953 504 0.429991401114608 4 3 1 -6.77615085761083 LTS-041 chr12 42599841 42604149 4309 * YAF2 NA 0 NA 0.774 1 NA NA NA NA NA LTS-041 chr12 42604150 47469680 4865531 * c(YAF2, PRICKLE1, ANO6, ARID2, AMIGO2, LINC00938, DBX2, NELL2, PLEKHA8P1, IRAK4, PPHLN1, SLC38A2, SLC38A4, TWF1, RNY5, ADAMTS20, SLC38A1, PUS7L, RACGAP1P, TMEM117, ZCRB1, SCAF11) 0.386461826066838 33 0.131067022526414 1.05351415457868 2178 0.269089772044956 3 2 1 -6.83698899963101 LTS-041 chr12 47469681 48597170 1127490 * c(PCED1B-AS1, MIR4698, RAPGEF3, OR10AD1, COL2A1, ASB8, SENP1, AMIGO2, CCDC184, HDAC7, PFKM, SLC48A1, VDR, TMEM106C, RPAP3, ENDOU, PCED1B) 0.276020108266155 37 0.11623968196646 0.882427544495797 1716 0.274603680138095 2 2 0 -7.05302547063461 LTS-041 chr12 48597171 48722704 125534 * character(0) NA 0 NA 0.606 1 NA NA NA NA NA LTS-041 chr12 48722705 49890675 1167971 * c(TROAP, LOC100335030, MIR4701, TUBA1B, ADCY6, RHEBL1, C12orf54, ZNF641, DDN, ANP32D, LINC00935, RND1, C1QL4, H1FNT, OR8S1, ARF3, LALBA, DHH, FKBP11, KANSL2, PRKAG1, LMBR1L, PRPH, SPATS2, SNORA2A, SNORA2B, SNORA2C, WNT1, WNT10B, CACNB3, TUBA1A, DNAJC22, KMT2D, TUBA1C, CCDC65, CCNT1, DDX23) 0.335187856589643 29 0.10233545004042 0.729287187448401 2691 0.189182992581982 2 1 1 -7.30642518288578 LTS-041 chr12 49890676 51375048 1484373 * c(BCDIN3D-AS1, MIR1293, MCRS1, LARP4, FAM186A, BCDIN3D, FAIM2, KCNH3, PRPF40B, METTL7A, GPD1, LOC283332, TMPRSS12, RACGAP1, AQP2, AQP5, AQP6, ASIC1, ATF1, SLC11A2, LIMA1, DIP2B, NCKAP5L, HIGD1C, SPATS2, SMARCD1, TMBIM6, FAM186B, COX14, FMNL3, CERS5) 0.385453306224569 18 0.149486135059956 1.02563108981653 2930 1.01645799282004 3 2 1 -6.74824775024456 LTS-041 chr12 51375049 51771059 396011 * c(GALNT6, CELA1, LETMD1, SLC11A2, BIN2, POU6F1, SMAGP, TFCP2, CSRNP2, DAZAP2) 0.397521508684342 9 0.0821218606705912 1.16723856424944 794 0.27839017909342 4 2 2 -6.80948160357424 LTS-041 chr12 51771060 51773047 1988 * GALNT6 NA 0 NA 0.716 1 NA NA NA NA NA LTS-041 chr12 51773048 53805011 2031964 * c(GALNT6, KRT71, SP7, KRT74, KRT72, KRT80, GRASP, KRT78, EIF4B, TNS2, LOC283335, ZNF740, C12orf80, LINC00592, KRT6C, NR4A1, KRT73, KRT79, ANKRD33, IGFBP6, ITGB7, KRT77, KRT1, KRT2, KRT3, KRT4, KRT5, KRT6A, KRT6B, KRT7, KRT8, KRT18, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, FIGNL2, KRT76, CSAD, PFDN5, RARG, C12orf10, ATG101, SCN8A, SP1, AAAS, SOAT2, SPRYD3, MFSD5, ACVR1B, KRT75, ACVRL1, SLC4A8, NA NA NA NA NA NA NA NA NA LTS-041 ESPL1) 0.269292741474876 113 0.115258321697858 1.06971588280637 4148 0.360144023356997 3 2 1 -7.13537703161179 LTS-041 NA NA NA NA LTS-041 chr12 53805012 53805124 113 * SP1 NA 0 NA 1.133 1 NA NA NA NA NA LTS-041 chr12 53805125 53910047 104923 * c(LOC100652999, ATF7, AMHR2, PCBP2, PRR13, SP1, TARBP2, MAP3K12, NPFF) 0.148 1 NA 1.19122551433116 524 0.311458665521454 3 3 0 -5.76811117258411 LTS-041 chr12 53910048 56435655 2525608 * c(HOTAIR, LOC100240734, LOC100240735, BLOC1S1-RDH5, MIR3198-2, LOC100652999, HOXC13-AS, CDK2, GDF11, ATF7, DCD, MUCL1, OR2AP1, OR10P1, GTSF1, OR10A7, DGKA, METTL7B, COPZ1, CBX5, SMUG1, OR6C74, OR6C3, ZNF385A, BLOC1S1, OR6C6, ORMDL2, NCKAP1L, HNRNPA1, HOXC4, HOXC5, HOXC6, HOXC8, HOXC9, HOXC10, HOXC11, HOXC12, HOXC13, OR6C2, OR6C4, ITGA5, ITGA7, OR6C1, OR6C75, OR6C76, OR6C70, LOC400043, OR6C65, OR6C68, NA NA NA NA NA NA NA NA NA LTS-041 MIR196A2, MMP19, FLJ12825, OR9K2, MIR148B, NFE2, PDE1B, ATP5G2, GPR84, PPP1R1A, CALCOCO1, NEUROD4, RAB5B, RDH5, IKZF4, GLYCAM1, PMEL, SUOX, MIR615, PYM1, SARNP, DNAJC14, LACRT, CD63, TESPA1) 0.300580349667408 56 0.125028033220191 1.0168042803102 3853 0.314452686836963 3 2 1 -6.99462752233531 LTS-041 NA NA NA NA LTS-041 chr12 56435656 56492168 56513 * c(ERBB3, RPS26) 0.032 1 NA 1.02968137918893 147 0.246118965629946 3 3 0 -5.76716671283441 LTS-041 chr12 56492169 57107573 615405 * c(RNF41, CNPY2, PTGES3, BAZ2A, MYL6B, CS, ERBB3, ESYT1, SNORD59A, GLS2, ANKRD52, SLC39A5, SPRYD4, APOF, MIP, MYL6, NACA, PA2G4, ATP5B, IL23A, RBMS2, RPL41, SMARCC2, STAT2, SNORD59B, NABP2, ZC3H10, TIMELESS, COQ10A, PAN2) 0.196416924712718 6 0.151169661859338 1.03330959542964 2365 0.251464988798144 3 3 0 -6.82350169928346 LTS-041 chr12 57107574 57108198 625 * NACA NA 0 NA 0.79 1 NA NA NA NA NA LTS-041 chr12 57108199 78583988 21475790 * c(LOC100130075, AGAP2-AS1, MIR1279, MIR1228, SNORA70G, MIR548Z, MIR3913-2, MIR3913-1, LOC100506844, LOC100507250, LOC100507377, TSFM, CTDSP2, CDK4, TMEM5, DCTN2, CCT2, AVIL, FRS2, OS9, GLIPR1, CPSF6, KRR1, WIF1, IRAK3, NXPH4, XPOT, GPR182, MBD6, OSBPL8, ARHGEF25, C12orf56, AGAP2, RAB3IP, SDR9C7, LRIG3, TPH2, CPM, GLIPR1L2, BEST3, E2F7, C12orf66, CSRP2, CYP27B1, DDIT3, DTX3, ZFC3H1, RPSAP52, PHLDA1, R3HDM2, NA NA NA NA NA NA NA NA NA LTS-041 RAB21, MON2, NEMP1, TBC1D30, ZDHHC17, GRIP1, LEMD3, STAC3, MSRB3, GLIPR1L1, B4GALNT1, METTL21B, KCNMB4, GLI1, GNS, RASSF3, TRHDE-AS1, LINC01465, DPY19L2, TBK1, TRHDE, FAM19A2, IFNG, INHBC, KCNC2, LRRC10, KIF5A, FLJ41278, LRP1, MIRLET7I, LYZ, MIR26A2, MARS, MDM2, METTL1, MYO1A, NAB2, NACA, NAP1L1, CNOT2, IL22, TMBIM4, AVPR1A, TMEM19, ATXN7L3B, SLC35E3, PRIM1, IL26, CAND1, MDM1, NDUFA4L2, NUP107, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PPM1H, SRGAP1, PTPRB, PTPRR, RAP1B, TSPAN31, ARHGAP9, SHMT2, TBC1D15, SLC26A10, STAT6, TAC3, MIR548C, TSPAN8, MRS2P2, BBS10, PIP4K2C, YEATS4, HMGA2, THAP2, INHBE, LLPH, DYRK2, CAPS2, LGR5, RDH16, HSD17B6, NAV3, ATP23, SLC16A7, HELB, MARCH9, ZBTB39, USP15) 0.184710424388571 214 0.130643524301211 0.8768389855051 13777 0.27074315094061 2 2 0 -6.99272225614901 LTS-041 NA NA NA NA LTS-041 chr12 78583989 78590992 7004 * NAV3 NA 0 NA 1.357 1 NA NA NA NA NA LTS-041 chr12 78590993 80329020 1738028 * c(MIR1252, PPP1R12A, PAWR, SYT1, NAV3) 0.429 1 NA 1.17987242697412 572 0.370767044153847 3 3 0 -5.79723935670358 LTS-041 chr12 80329021 80601844 272824 * PPP1R12A NA 0 NA 0.985 1 NA NA NA NA NA LTS-041 chr12 80601845 93969096 13367252 * c(POC1B-GALNT4, MIR4699, MIR548AL, KERA, NUDT4, TSPAN19, SOCS2-AS1, TMTC2, TMTC3, C12orf50, DCN, EPYC, DUSP6, CCER1, LINC01619, MGAT4C, POC1B, OTOGL, MRPL42, CCDC59, LINC00936, C12orf74, PTPRQ, MKRN9P, LUM, KITLG, LINC00615, PLEKHG7, MYF5, MYF6, ATP2B1, NTS, SLC6A15, CLLU1OS, CLLU1, LOC643339, MIR617, MIR618, BTG1, LOC728084, UBE2N, ACSS3, CEP290, ALX1, EEA1, LRRIQ1, METTL25, PPFIA2, GALNT4, LIN7A, NA NA NA NA NA NA NA NA NA LTS-041 SOCS2, C12orf29, RASSF9) 0.175144602272807 66 0.122894356436017 0.903511001506294 4420 0.300919640051914 2 2 0 -7.13949543473002 LTS-041 NA NA NA NA LTS-041 chr12 93969097 93969195 99 * SOCS2 NA 0 NA 0.904 1 NA NA NA NA NA LTS-041 chr12 93969196 96661515 2692320 * c(PGAM1P5, MIR3685, MIR5700, PLXNC1, METAP2, CCDC38, AMDHD1, CEP83-AS1, KRT19P2, ELK3, HAL, LTA4H, MIR331, CEP83, VEZT, FGD6, NDUFA12, TMCC3, NTN4, SNRPF, NR2C1, USP44, CRADD, SOCS2) 0.144268983632694 48 0.137127986432823 0.82527745824629 2043 0.265616403237477 2 2 0 -6.81392436722375 LTS-041 chr12 96661516 97338532 677017 * c(NEDD1, ELK3, CDK17) 0.0690581397304024 12 0.0834525813461353 0.723780510977039 580 0.264337589416654 2 2 0 -7.93988204357045 LTS-041 chr12 97338533 120900016 23561484 * c(TMPO-AS1, LINC01405, USP30-AS1, SH2B3, LINC00173, LOC100287944, MIR1827, MIR1178, MIR1251, MIR4303, MIR3652, MIR3922, LOC100505978, PXN-AS1, MIR4498, MIR4472-2, MIR4497, ARPC3, TRAFD1, ERP29, CKAP4, GCN1, SDS, RAB35, PRDM4, CIT, PWP1, FICD, SDSL, IQCD, DEPDC4, C12orf45, NEDD1, SLC9A7P1, IKBIP, ASCL4, BTBD11, SPIC, ANO4, ALKBH2, FOXN4, CMKLR1, COX6A1, CRY1, RAD9B, FAM109A, LINC00934, ALDH1L2, SLC5A8, NA NA NA NA NA NA NA NA NA LTS-041 PPTC7, CCDC63, CCDC60, DAO, DTX1, PLBD2, FAM71C, RMST, ALDH2, RPH3A, FBXO21, UHRF1BP1L, CUX2, KIAA1033, MED13L, SIRT4, ISCU, CORO1C, SLC17A8, TTC41P, TCP11L2, TBX5-AS1, FBXW8, HSPB8, UTP20, GAS2L3, LINC00485, MYO1H, HECTD4, KSR2, GATC, IFT81, FAM216A, HCFC2, APAF1, ACACB, MMAB, TMEM119, IGF1, C12orf42, C12orf75, CFAP73, TMEM233, ARL1, C12orf76, MIR135A2, ASCL1, MSI1, MVK, MYBPC1, MYL2, NFYB, NOS1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ATP2A2, OAS1, EID3, OAS2, OAS3, PEBP1, SYCP3, CHST11, PAH, CCDC53, GPN3, GLTP, MAPKAPK5-AS1, TAOK3, ANAPC7, TRIAP1, NT5DC3, VPS29, SLC25A3, PLA2G1B, TPCN1, PMCH, SSH1, VSIG10, TESC, PPP1CC, PARPBP, RIC8B, APPL2, DRAM1, SVOP, STAB2, GOLGA2P5, PRKAB1, SCYL2, POLR3B, WSB2, ANKS1B, CHPT1, PTPN11, PXN, TRPV4, RFC5, RFX4, RPL6, RPLP0, ATXN2, SELPLG, LHX5, MAP1LC3B2, LOC643711, LOC643770, SUDS3, ACTR6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SNORA53, TBX5, TBX3, MIR620, TDG, TMPO, HSP90B1, C12orf73, LOC728739, TXNRD1, UNG, NUP37, DDX54, GNPTAB, TCTN1, C12orf49, NAA25, SLC8B1, MTERF2, ACAD10, BRAP, GLT8D2, KCTD10, SLC41A2, TCHP, HVCN1, RASAL1, SRRM4, USP30, RNFT2, FAM222A, RITA1, FAM222A-AS1, MAPKAPK5, SRSF9, HRK, ADAM1A, ANKRD13A, TMEM116, UBE3B, TMEM263, BICDL1, WSCD2, SART3, GIT2, NUAK1, RBM19, NR1H4) 0.147564314999703 338 0.113660378694152 0.882488169936398 19849 0.444783237260982 2 2 0 -6.96629153435522 LTS-041 NA NA NA NA LTS-041 chr12 120900017 121881812 981796 * c(NRAV, MIR4700, CAMKK2, SPPL3, GATC, HNF1A-AS1, ACADS, P2RX4, P2RX7, POP5, ANAPC5, C12orf43, HNF1A, RNF34, COQ5, KDM2B, UNC119B, OASL, DYNLL1, SRSF9, CABP1, MLEC, RNF10) 0.13451157513968 47 0.104677956421551 0.768446963042553 1573 0.299260619492994 2 2 0 -6.9619689165607 LTS-041 chr12 121881813 121881848 36 * KDM2B NA 0 NA 1.288 1 NA NA NA NA NA LTS-041 chr12 121881849 124800592 2918744 * c(MIR4304, MIR3908, CLIP1-AS1, LOC100507091, ZNF664-FAM101A, MPHOSPH9, TMED2, SNRNP35, RFLNA, ZNF664, TMEM120B, WDR66, RILPL2, DNAH10, EIF2B1, MLXIP, SETD1B, ABCB9, ATP6V0A2, LRRC43, HCAR1, MORN3, GTF2H3, HPD, HCAR2, LINC01089, RILPL1, IL31, KMT5A, ARL6IP4, RHOF, SBNO1, ZCCHC8, DIABLO, PSMD9, PITPNM2, DDX55, BCL7A, CLIP1, VPS33A, RSRC2, B3GNT4, OGFOD2, VPS37B, TCTN2, CCDC92, CDK2AP1, CCDC62, KDM2B, ORAI1, NA NA NA NA NA NA NA NA NA LTS-041 DENR, HCAR3, HIP1R, C12orf65, KNTC1) 0.112275031355436 81 0.103508428415692 0.87661004316487 5317 0.31211297952658 2 2 0 -7.09257107206666 LTS-041 NA NA NA NA LTS-041 chr12 124800593 124808944 8352 * character(0) NA 0 NA 1.192 1 NA NA NA NA NA LTS-041 chr12 124808945 125399885 590941 * c(UBC, SCARB1, NCOR2) 0.0640408704568169 12 0.0667961054027082 1.0444030116342 481 0.300609049081715 4 4 0 -7.3804966911584 LTS-041 chr12 125399886 125400020 135 * character(0) NA 0 NA 0.841 1 NA NA NA NA NA LTS-041 chr12 125400021 133734213 8334193 * c(LOC100128554, LOC100130238, LOC100190940, ZNF605, MIR3612, LRCOL1, LINC00943, MIR5188, LINC00507, ZNF891, ZNF268, FZD10, TMEM132B, LINC01257, TMEM132D, SLC15A4, BRI3BP, GLT1D1, PGAM5, STX2, P2RX2, ANKLE2, RIMBP2, GOLGA3, ADGRD1, DDX51, EP400NL, LINC00944, LINC00939, FLJ37505, MMP17, LOC440117, FZD10-AS1, GALNT9, POLE, CHFR, EP400, DHX37, FBRSL1, PXMP2, RAN, SFSWAP, AACS, SNORA49, ZNF10, ZNF140, NOC4L, NA NA NA NA NA NA NA NA NA LTS-041 PUS1, ULK1, TMEM132C, PIWIL1) 0.130468067248091 109 0.128570992062751 0.905118862118774 5029 0.311458621210277 2 2 0 -7.11383695963066 LTS-041 NA NA NA NA LTS-041 chr12 133734214 133811930 77717 * c(ZNF268, ANHX, ZNF10) 0.0619492900506273 14 0.0584817525781793 0.812128467852553 246 0.414076604060405 7 7 0 -7.01397231024449 LTS-041 chr12 133811931 133812708 778 * ANHX NA 0 NA 0.707938707910586 13 0.172800166191753 2 NA NA -5.76488721246596 LTS-041 chr13 19271621 33091485 13819865 * c(ANKRD26P3, LINC00426, LINC00421, PAN3-AS1, MIR2276, MINOS1P1, SACS-AS1, LINC00327, TEX26-AS1, MIR4499, RNU6-52P, LINC00297, MTUS2-AS1, LINC00398, LINC00417, LINC00424, SPATA13-AS1, FRY, USPL1, CDK8, SAP18, N4BP2L2, CDX2, GJB6, HSPH1, WASF3, N4BP2L2-IT2, RXFP2, TEX26, PARP4, B3GLCT, EEF1DP3, AMER2, USP12, MTIF3, GSX1, EEF1AKMT1, SKA3, MICU2, SPATA13, LNX2, FGF9, FLT1, FLT3, MTUS2, ALOX5AP, ZDHHC20, PAN3, NA NA NA NA NA NA NA NA NA LTS-041 SACS, LATS2, SNORD102, GJA3, GJB2, GPR12, SLC46A3, ANKRD20A9P, GTF3A, HMGB1, C1QTNF9, LINC00442, PDX1, TPTE2P6, RASL11A, C1QTNF9B, SHISA2, ANKRD20A19P, MIPEP, ATP5EP2, LINC00544, ATP12A, PABPC3, POLR1D, CRYL1, POMP, ATP8A2, IL17D, UBL3, C1QTNF9B-AS1, MPHOSPH8, PSPC1, TNFRSF19, CENPJ, RNF17, RNF6, RPL21, SNORA27, XPO4, SGCG, BASP1P1, TPTE2P1, URAD, ZAR1L, MIPEPP3, SLC7A1, BRCA2, TUBA3C, ZMYM2, MRPL57, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 IFT88, KATNAL1, MEDAG, N4BP2L1, MTMR6, ZMYM5, TPTE2, NUP58) 0.238027628874038 152 0.149926048925437 0.586561134387822 8171 0.221915396597206 1 1 0 -6.7818431595596 LTS-041 NA NA NA NA LTS-041 chr13 33091486 36246711 3155226 * c(MIR548F5, LINC00423, LINC00457, STARD13-AS, N4BP2L2, PDS5B, NBEA, RFC3, STARD13, KL) 0.297290254054854 8 0.131725295867683 0.663042332848732 1022 0.179275196222165 1 1 0 -7.6172393695511 LTS-041 chr13 36246712 98119932 61873221 * c(LINC00462, TPT1-AS1, MIR1297, MIR548F5, MIR759, MIR320D1, MIR4305, MIR3169, MIR3665, MIR3613, RBM26-AS1, OR7E37P, SPG20-AS1, VWA8-AS1, CPB2-AS1, CCDC169-SOHLH2, MIR4500, MIR4703, TPTE2P5, GPC6, MIR5007, MIR5693, MIR5006, LINC00558, LINC00563, LINC00441, MED4-AS1, GPC5-AS1, GPC6-AS2, PCDH9-AS2, DLEU7-AS1, PCDH9-AS3, LINC00331, LINC00332, LINC00333, LINC00351, LINC00353, LINC00366, LINC00379, LINC00381, LINC00433, LINC00446, NA NA NA NA NA NA NA NA NA LTS-041 LINC00559, LINC00571, CLDN10-AS1, DIAPH3-AS1, DIAPH3-AS2, NDFIP2-AS1, MYCBP2-AS1, RNF219-AS1, RNASEH2B-AS1, SMIM2-IT1, LINC00348, MRPS31P5, LINC00359, MBNL2, LPAR6, SLC25A15, LHFP, TRIM13, MRPS31, SPRY2, ABCC4, DLEU1, PIBF1, OLFM4, POSTN, SUGT1, RCBTB2, LECT1, SOX21, WBP4, AKAP11, KLF12, EXOSC8, SLITRK1, KCTD12, ARL11, WDFY2, CLN5, LINC00284, CSNK1A1L, SLAIN1, CPB2, LINC00410, FAM216B, LACC1, LINC00330, HNRNPA1L2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ST13P4, DACH1, DGKH, CCDC122, GPR180, STOML3, DCT, COMMD6, EDNRB, ELF1, ESD, ERICH6B, SPERT, DLEU7, FAM124A, TPTE2P3, CTAGE10P, GPC5, FNDC3A, DZIP1, DIS3, MYCBP2, VWA8, FOXO1, ZC3H13, SPG20, LRCH1, TGDS, SLC25A30, SLITRK5, FBXL3, INTS6, CKAP2, HS6ST3, NUFIP1, NBEA, OXGR1, PCDH17, OR7E156P, SUGT1P3, SIAH3, KCNRG, LINC00282, MLNR, RGCC, MED4, DNAJC15, GTF2F2, GUCY1B2, ALG5, HTR2A, LINC00550, LINC00347, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 FREM2, NEK5, KPNA3, KCTD4, NHLRC3, SERP2, LCP1, SERTM1, LINC00547, LINC00548, LMO7, MIR16-1, MIR19B1, MIR17HG, SMAD9, ALG11, MZT1, NEK3, PCDH8, PCDH9, VPS36, PHF11, UFM1, ATP7B, POU4F1, NDFIP2, SOHLH2, ENOX1, RCBTB1, NUDT15, GPALPP1, SUPT20H, UGGT2, THSD1, DNAJC3, CYSLTR2, SPRYD7, COG6, KLHL1, RAP2A, RB1, RFXAP, ATXN8OS, RBM26, TSC22D1-AS1, MIR4500HG, LINC00598, LINC00371, SERPINE3, CTAGE11P, PCDH20, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SNORA31, KLF5, BTF3P11, MIR621, MIR622, TPT1, TRPC4, CCDC169, PRR20B, PRR20D, PRR20E, LMO7DN, ACOD1, UCHL3, RNF219, NAA16, RNASEH2B, DHRS12, BORA, RUBCNL, PROSER1, TDRD3, CDADC1, CAB39L, DIAPH3, CCDC70, COG3, SETDB2, KBTBD7, SLITRK6, EBPL, TNFSF11, SCEL, SUCLA2, DLEU2, TSC22D1, CCNA1, KBTBD6, CLDN10, DCLK1, EPSTI1, ITM2B, MTRF1, UTP14C, TBC1D4) 0.241961938046205 267 0.142877478418021 0.60379326471798 15178 0.241695693503207 1 1 0 -7.53479137790217 LTS-041 NA NA NA NA LTS-041 chr13 98119933 103383238 5263306 * c(FKSG29, UBAC2-AS1, MIR4306, MIR3170, MIR2681, MIR548AN, MIR4705, PCCA-AS1, NALCN-AS1, FARP1, RNF113B, CLYBL, GPR183, METTL21C, FGF14, DOCK9, NALCN, FGF14-IT1, FGF14-AS2, GPR18, UBAC2, IPO5, PCCA, RAP2A, CCDC168, SLC15A1, MIR623, TPP2, ZIC2, STK24, TMTC4, ZIC5, GGACT, ITGBL1, TM9SF2) 0.155200247339446 32 0.112358010754219 0.894350971546449 2404 0.284446546828253 2 2 0 -6.92761449684168 LTS-041 chr13 103383239 103493438 110200 * c(BIVM-ERCC5, BIVM, CCDC168, KDELC1, TEX30) 0.135805435303265 16 0.0766079847883583 0.765720458401444 618 0.240581353412834 3 3 0 -6.89433183931435 LTS-041 chr13 103493439 114839373 11345935 * c(LINC00552, MCF2L-AS1, GAS6-AS2, BIVM-ERCC5, MIR548AS, LINC00565, LINC00443, COL4A2-AS1, MYO16-AS1, TUBGCP3, TNFSF13B, ADPRHL1, TEX29, METTL21EP, SPACA7, COL4A1, COL4A2, LINC00343, EFNB2, ERCC5, F7, F10, RASA3, MYO16, ATP11A, MCF2L, GAS6, DAOA, DAOA-AS1, LINC00551, LINC00346, TMEM255B, ING1, LAMP1, LIG4, ATP11AUN, ATP4B, BIVM, TMCO3, ARGLU1, DCUN1D2, ANKRD10, RAB20, NAXD, PCID2, GRK1, GAS6-AS1, SLC10A2, NA NA NA NA NA NA NA NA NA LTS-041 SOX1, TFDP1, LINC00460, FAM155A, CARS2, GRTP1, CUL4A, ABHD13, IRS2, PROZ, ARHGEF7) 0.147591118254615 106 0.123549858256867 0.915428693907155 4625 0.306473786667075 2 2 0 -7.26177575956984 LTS-041 NA NA NA NA LTS-041 chr13 114839374 114897817 58444 * RASA3 NA 0 NA 0.531 1 NA NA NA NA NA LTS-041 chr13 114897818 115091399 193582 * c(RASA3, CHAMP1, UPF3A, CDC16) 0.04923083938976 10 0.0124114642345069 0.804670777842579 204 0.309775850631553 10 10 0 -8.44768674652911 LTS-041 chr14 19434116 20228864 794749 * c(BMS1P17, POTEG, OR4Q3, POTEM, OR11H2) 0.206 1 NA 1.96921830877254 61 0.463884485456234 6 6 0 -5.76826966317125 LTS-041 chr14 20228865 20404847 175983 * c(OR4N2, OR4K2, OR4M1, OR4K5, OR4K1) 0.404320681619334 7 0.0535372589440111 1.82424088896092 138 0.34037389507439 6 3 3 -6.75972479020033 LTS-041 chr14 20404848 20443533 38686 * character(0) NA 0 NA 0.74 1 NA NA NA NA NA LTS-041 chr14 20443534 20794672 351139 * c(SNORD126, OR4K14, OR4L1, OR11H6, OR4K13, OR4K17, OR4N5, OR11G2, OR11H4, CCNB1IP1, OR4K15, TTC5) 0.437883627748835 20 0.0399066014852839 0.838459787424762 436 0.745123633464202 2 1 1 -7.40321031131475 LTS-041 chr14 20794673 22070617 1275945 * c(SNORD126, PARP2, EDDM3A, SUPT16H, RNASE11, TPPP2, RNASE8, KLHL33, OR10G3, ANG, LINC00641, SLC39A2, HNRNPC, SNORD8, APEX1, RNASE10, OR6S1, RNASE9, OR5AU1, RNASE13, PNP, RNASE12, ZNF219, OSGEP, ARHGEF40, METTL3, RPGRIP1, NDRG2, CHD8, CCNB1IP1, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, SALL2, EDDM3B, ECRP, TMEM253, METTL17, SNORD9, TEP1, RNASE7, RAB2B, RPPH1, TMEM55B, TOX4) 0.352942339821624 78 0.117444543420377 1.16800047289592 2766 0.371459613540896 3 2 1 -6.75733239854695 LTS-041 chr14 22070618 22090095 19478 * character(0) NA 0 NA 0.465 1 NA NA NA NA NA LTS-041 chr14 22090096 22991095 901000 * c(OR10G2, OR4E2) 0.301222859570752 32 0.0963139816668179 0.747757710647108 975 0.248231569503441 1 1 0 -7.28216993522233 LTS-041 chr14 22991096 22992443 1348 * character(0) NA 0 NA 0.547 1 NA NA NA NA NA LTS-041 chr14 22992444 23713651 721208 * c(MIR4707, PRMT5, CEBPE, MRPL52, PSMB11, DAD1, REM2, ACIN1, SLC7A8, LRP10, MMP14, OXA1L, HAUS4, C14orf119, RBM23, PSMB5, C14orf93, ABHD4, CDH24, AJUBA, SLC7A7) 0.233689695700353 34 0.161011035261363 0.599507797732807 1785 0.181814593670566 1 1 0 -6.78530884244023 LTS-041 chr14 23713652 23727682 14031 * character(0) NA 0 NA 0.827 1 NA NA NA NA NA LTS-041 chr14 23727683 31175155 7447473 * c(MIR208B, MIR4307, LINC00645, NEDD8-MDP1, BCL2L2-PABPN1, MIR548AI, DHRS2, EFS, IRF9, TM9SF1, DHRS4, RIPK3, DHRS1, CMTM5, CMA1, LTB4R, MDP1, CTSG, FITM1, NOP9, ADCY4, FOXG1, SCFD1, KHNYN, NGDN, TINF2, CIDEB, TSSK4, CHMP4A, STXBP6, GZMH, GZMB, DHRS4L2, LINC01551, MIR208A, MYH6, MYH7, NEDD8, NFATC4, NOVA1, NRL, EMC9, PCK2, GMPR2, SLC22A17, RNF31, DHRS4-AS1, G2E3, PRKD1, LTB4R2, SDR39U1, PSME1, PSME2, NA NA NA NA NA NA NA NA NA LTS-041 NYNRIN, HOMEZ, RABGGTA, BCL2L2, CBLN3, IL25, TGM1, DHRS4L1, THTPA, IPO4, DCAF11, PABPN1, JPH4, ZFHX2, AP1G2, CARMIL3, PPP1R3E, CPNE6, REC8) 0.330560089845969 108 0.120422620286371 0.753525386521811 5424 0.224209608908335 2 1 1 -7.84533293340441 LTS-041 NA NA NA NA LTS-041 chr14 31175156 31177003 1848 * SCFD1 NA 0 NA 0.925 1 NA NA NA NA NA LTS-041 chr14 31177004 38064255 6887252 * c(SLC25A21-AS1, LOC100506071, MIR4503, PTCSC3, LINC00609, CFL2, AP4S1, BAZ1A, EGLN3, DTD2, MIPOL1, COCH, SPTSSA, SCFD1, RALGAPA1, SFTA3, HECTD1, HEATR5A, NKX2-8, IGBP1P1, FAM177A1, GPR33, STRN3, FOXA1, ARHGAP5, NFKBIA, PAX9, MBIP, PPP2R3C, EAPP, PSMA6, SNX6, NPAS3, SRP54, MIR624, NKX2-1, NUBPL, BRMS1L, INSM2, ARHGAP5-AS1, SLC25A21, AKAP6, KIAA0391) 0.364456507239728 62 0.141157421002107 0.99807371509188 3919 0.302709581763993 3 2 1 -7.16398892495051 LTS-041 chr14 38064256 38091228 26973 * FOXA1 NA 0 NA 1.746 1 NA NA NA NA NA LTS-041 chr14 38091229 39818145 1726917 * c(LOC100288846, SEC23A, NA, TRAPPC6B, CLEC14A, LINC00639, MIA2, PNN, SSTR1, GEMIN2) 0.230782967125834 19 0.113433315031627 1.36614750475036 918 0.44092881462569 5 4 1 -6.9310662441719 LTS-041 chr14 39818146 42882099 3063954 * c(LRFN5, FBXO33, MIA2) NA 0 NA 1.45381336452381 184 0.25512893241439 4 NA NA -5.87224528600877 LTS-041 chr14 42882100 44589434 1707335 * character(0) 0.039 1 NA 1.15332533116873 25 0.62560270939311 3 3 0 -5.76929281081175 LTS-041 chr14 44589435 50150522 5561088 * c(SNORD127, MIR548Y, LINC00871, LINC00648, C14orf28, LRR1, RPL10L, MDGA2, FKBP3, FAM179B, MGAT2, POLE2, KLHL28, PRPF39, DNAAF2, MIS18BP1, FANCM, RPL36AL, RPS29, FSCB, NEMF) 0.126778464641478 21 0.0895610991233944 1.13266429113913 1305 0.307828187632481 3 3 0 -6.78424638055239 LTS-041 chr14 50150523 50154725 4203 * c(POLE2, NEMF) NA 0 NA 2.067 1 NA NA NA NA NA LTS-041 chr14 50154726 50219904 65179 * c(KLHDC1, POLE2, NEMF) 0 1 NA 2.79752373966463 96 0.671154667509135 9 9 0 -5.7645905697325 LTS-041 chr14 50219905 50234308 14404 * NEMF NA 0 NA 1.528 1 NA NA NA NA NA LTS-041 chr14 50234309 52171681 1937373 * c(NA, FRMD6-AS2, MAP4K5, TRIM9, FRMD6, FRMD6-AS1, ABHD12B, LINC01599, KLHDC2, ATP5S, LINC01588, LINC00640, ARF6, ATL1, NIN, PYGL, SAV1, SOS2, VCPKMT, L2HGDH, TMX1, CDKL1, NEMF) 0.0435143093095377 44 0.0512213618227468 2.08069440876391 1994 0.689842623235758 8 8 0 -6.91697312655643 LTS-041 chr14 52171682 52174739 3058 * FRMD6 NA 0 NA 1.357 1 NA NA NA NA NA LTS-041 chr14 52174740 53620041 1445302 * c(FERMT2, FRMD6, NID2, GPR137C, ERO1A, C14orf166, GNG2, PSMC6, PTGDR, PTGER2, TXNDC16, GNPNAT1, STYX, DDHD1) 0.0667416883365742 20 0.0731318024276429 1.57787625522512 1523 1.13370544758897 6 6 0 -6.79683741491328 LTS-041 chr14 54415023 54863722 448700 * c(MIR5580, CDKN3, BMP4) 0.221715869347886 2 0.158391918985787 1.09281688403188 42 0.37660759175158 3 3 0 -6.86546218616756 LTS-041 chr14 54863723 57197024 2333302 * c(KTN1-AS1, MIR4308, CNIH1, CDKN3, CGRRF1, WDHD1, SOCS4, ATG14, SAMD4A, GCH1, GMFB, TBPL2, KTN1, LGALS3, TMEM260, FBXO34, PELI2, RPL13AP3, LINC00520, MAPK1IP1L, DLGAP5) 0.0891020985872125 13 0.0863862821493653 0.611527831520829 1918 0.188297373243487 1 1 0 -8.80663453095987 LTS-041 chr14 57197025 57936491 739467 * c(OTX2-AS1, EXOC5, NAA30, OTX2, AP5M1) 0.351 1 NA 0.617314285605218 475 0.160591074555025 1 1 0 -5.82425149123424 LTS-041 chr14 57936492 60865219 2928728 * c(L3HYPDH, C14orf37, DAAM1, TIMM9, SLC35F4, LRRC9, PSMA3-AS1, TOMM20L, DACT1, JKAMP, DHRS7, PPM1A, C14orf105, ACTR10, PSMA3, ARID4A, RTN1, PCNX4, GPR135, CCDC175, KIAA0586) 0.235876779190749 26 0.18386691257119 0.630503646058695 2136 0.207197775720374 1 1 0 -7.01465347831646 LTS-041 chr14 60865220 60867038 1819 * character(0) NA 0 NA 0.41065405873946 39 0.0865652032456198 0 NA NA -5.77336163016891 LTS-041 chr14 60867039 60899978 32940 * character(0) NA 0 NA 0.589 1 NA NA NA NA NA LTS-041 chr14 60899979 68272403 7372425 * c(LOC100506321, CHURC1-FNTB, MIR4708, MIR4706, HIF1A-AS2, GPHN, VTI1B, WDR89, GPHB5, RDH12, PPP1R36, SLC38A6, FAM71D, TMEM229B, TMEM30B, EIF2S1, ESR2, ZBTB1, SYNE2, FNTB, ZFYVE26, FUT8, PLEKHG3, PLEK2, KCNH5, GPX2, HIF1A, C14orf39, HSPA2, RAB15, ARG2, FLJ22447, MAX, MNAT1, LINC00238, TEX21P, MTHFD1, SIX6, RDH11, ATP6V1D, SIX4, PIGH, PPP2R5E, PRKCH, RHOJ, PLEKHH1, TRMT5, MPP5, FUT8-AS1, LINC00643, SIX1, NA NA NA NA NA NA NA NA NA LTS-041 SNAPC1, SPTB, ZBTB25, SGPP1, SYT16, CHURC1, AKAP5) 0.281868855503087 111 0.157507425822369 0.58941499374097 5680 0.193466598786821 1 1 0 -6.75394167471488 LTS-041 NA NA NA NA LTS-041 chr14 68272404 68273205 802 * ZFYVE26 NA 0 NA 0.981 1 NA NA NA NA NA LTS-041 chr14 68273206 69928508 1655303 * c(ACTN1-AS1, ERH, ZFYVE26, EXD2, SLC39A9, GALNT16, RAD51B, ZFP36L1, ACTN1, DCAF5) 0.314032612298445 3 0.11983460824542 0.6660795403135 954 0.203200820173459 1 1 0 -7.20477227388428 LTS-041 chr14 69928509 69928593 85 * SLC39A9 NA 0 NA 0.492 1 NA NA NA NA NA LTS-041 chr14 69928594 73989983 4061390 * c(MED6, LOC100289511, SYNJ2BP-COX16, ADAM21P1, LOC145474, PCNX1, TTC9, SIPA1L1, DCAF4, ADAM20P1, SNORD56B, HEATR4, PLEKHD1, MAP3K9, COX16, ZFYVE1, SYNJ2BP, SLC39A9, PSEN1, CCDC177, RBM25, SMOC1, SRSF5, SLC8A3, SLC10A1, DPF3, NUMB, ADAM21, ADAM20, PAPLN, RGS6, SUSD6) 0.204658176402984 62 0.151868764493453 0.580448856933492 3057 0.208760557216588 1 1 0 -6.86173060538488 LTS-041 chr14 73989984 74003791 13808 * HEATR4 NA 0 NA 0.081 1 NA NA NA NA NA LTS-041 chr14 74003792 74021089 17298 * c(HEATR4, ACOT1) NA 0 NA 0.124573236211447 42 0.132523904884567 0 NA NA -6.25022872696365 LTS-041 chr14 74021090 74060544 39455 * c(ACOT2, ACOT4, HEATR4, ACOT1) 0.316246380841837 2 0.137885822331377 0.421318499974823 62 0.22022332122416 1 1 0 -6.83494575847722 LTS-041 chr14 74060545 74060550 6 * ACOT4 NA 0 NA 0.522 1 NA NA NA NA NA LTS-041 chr14 74060551 74946947 886397 * c(MIR4505, MIR4709, NPC2, ACOT4, PTGR2, FAM161B, VSX2, ALDH6A1, COQ6, VRTN, ZNF410, ABCD4, ACOT6, SYNDIG1L, BBOF1, DNAL1, ELMSAN1, LIN52, PNMA1, ENTPD5) 0.242958694890278 35 0.171205547502989 0.585082652970536 1565 0.644585484260013 1 1 0 -6.75489772377815 LTS-041 chr14 74946948 74947039 92 * NPC2 NA 0 NA 0.685 1 NA NA NA NA NA LTS-041 chr14 74947040 75388183 441144 * c(NPC2, ISCA2, DLST, PROX2, LTBP2, FCF1, YLPM1, RPS6KL1, AREL1) 0.139277358699231 14 0.117631665767381 0.630980039665746 1087 0.169971515364529 1 1 0 -7.50722624426582 LTS-041 chr14 75388184 75408978 20795 * c(PGF, RPS6KL1) 0.466 1 NA 0.6092026400848 17 0.111302251443853 1 1 0 -5.76654467436803 LTS-041 chr14 75408979 75422480 13502 * PGF 0.496 1 NA 0.688459322723987 52 0.193054016581501 1 1 0 -5.77056395880934 LTS-041 chr14 75422481 75469606 47126 * character(0) NA 0 NA 1.055 1 NA NA NA NA NA LTS-041 chr14 75469607 81942043 6472437 * c(MIR1260A, DIO2-AS1, BATF, AHSA1, TMED10, C14orf1, IFT43, NOXRED1, JDP2, LRRC74A, ISM2, CEP128, SAMD15, DIO2, ESRRB, VASH1, SNW1, TTLL5, ANGEL1, FOS, MLH3, ZDHHC22, TMED8, C14orf178, GSTZ1, GTF2A1, POMT2, FLVCR2, GPATCH2L, ADCK1, TMEM63C, NGB, VIPAS39, SEL1L, IRF2BPL, SNORA79, TGFB3, TSHR, LINC01220, ZC2HC1C, SLIRP, STON2, CIPC, ALKBH1, EIF2B2, NEK9, NRXN3, SPTLC2, ACYP1) 0.368540537019078 117 0.119779151327926 0.897293785101903 4783 0.377468891123861 2 1 1 -6.86211735409397 LTS-041 chr14 81942044 87389082 5447039 * c(LINC00911, FLRT2, LOC283585, SEL1L) NA 0 NA 1.07887773198513 369 0.251282186398108 3 NA NA -5.79290582598035 LTS-041 chr14 88399389 88417173 17785 * GALC 0 1 NA 0.545018278618573 64 0.598986716925819 1 1 0 -5.76453689306245 LTS-041 chr14 88417174 88429692 12519 * GALC NA 0 NA 1.207 1 NA NA NA NA NA LTS-041 chr14 88429693 104212949 15783257 * c(SNORA11B, MIR300, MIR541, MIR665, MIR543, MIR889, LOC100129345, LINC00605, MIR1247, MIR1185-1, MIR1185-2, MIR1197, MIR1193, MIR4309, MIR3173, TUNAR, MEG9, MIR2392, MIR5698, FBLN5, CYP46A1, PAPOLA, PTPN21, FOXN3, CHGA, CKB, TRMT61A, SERPINA3, ANKRD9, AK7, IFI27L1, TTC8, TC2N, SLC24A4, SLC25A29, DEGS2, LINC00239, GSC, SERPINA12, PRIMA1, TTC7B, SYNE3, EML5, DIO3, DYNC1H1, EIF5, EML1, RCOR1, PPP1R13B, NA NA NA NA NA NA NA NA NA LTS-041 DICER1, LINC00521, SERPINA11, GALC, TMEM251, TCL6, LINC01146, FAM181A-AS1, SNHG10, C14orf177, SLC25A47, LINC00523, FOXN3-AS2, CCDC85C, ITPK1-AS1, SERPINA9, HSP90AA1, COX8C, IFI27, ITPK1, KLC1, SERPINA13P, LINC01550, RTL1, FOXN3-AS1, LINC00642, DICER1-AS1, MIR127, MIR134, MIR136, MIR154, MIR299, MARK3, ATXN3, CCDC88C, MIR323A, MIR337, MIR345, MIR376C, MIR369, NDUFB1, MIR376A1, MIR377, MIR379, MIR380, MIR381, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MIR382, SERPINA5, SERPINA10, GLRX5, EVL, GSKIP, CINP, ASB2, SERPINA1, SERPINA4, CPSF2, KCNK10, NRDE2, ATG2B, UBR7, PPP2R5C, MEG3, PPP4R3A, BTBD7, TDP1, ZNF839, SPATA7, LGMN, KCNK13, C14orf132, PSMC1, DDX24, MIR433, MIR431, MIR329-1, MIR329-2, MIR323B, MIR409, MIR412, MIR410, MIR376B, MIR485, MIR493, MIR432, MIR494, MIR495, MIR496, UNC79, BEGAIN, PPP4R4, MOK, MIR487A, BDKRB1, BDKRB2, MOAP1, BCL11B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MIR539, MIR376A2, MIR487B, SNORA28, MIR411, TNFAIP2, TRAF3, MIR654, MIR655, MIR656, VRK1, WARS, XRCC3, YY1, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR758, MIR668, MIR770, OTUB2, ZFYVE21, MEG8, WDR25, LINC00341, CLMN, CATSPERB, ZC3H14, RIN3, C14orf159, CALM1, GPR68, TCL1A, AMN, IFI27L2, SETD3, APOPT1, HHIPL1, GON7, GPR65, SERPINA6, DLK1, CCNK, FAM181A, EFCAB11, EXOC3L4, WDR20, RPS6KA5, TRIP11, BAG5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CDC42BPB, TCL1B, TECPR2, GOLGA5) 0.347698511374574 293 0.115883424675194 1.17945584854944 14117 0.376751378321313 3 2 1 -7.02172092569988 LTS-041 NA NA NA NA LTS-041 chr14 104212950 104322806 109857 * c(LINC00637, PPP1R13B) 0.444 1 NA 1.22197656735905 61 0.265533138310426 3 3 0 -5.77393675016209 LTS-041 chr14 104322807 106304808 1982002 * c(ZBTB42, MIR203B, MIR4710, SIVA1, AHNAK2, TDRD9, C14orf79, PLD4, ADSSL1, CRIP1, CRIP2, LINC00637, LINC00638, ELK2AP, AKT1, PACS2, NUDT14, KIF26A, CEP170B, C14orf80, BRF1, GPR132, JAG2, ASPG, TMEM179, C14orf180, MIR203A, CDCA4, INF2, RD3L, TEX22, TMEM121, BTBD6, MTA1, C14orf2) 0.361189842460261 106 0.131733995091295 1.19703353597621 3273 0.406869966460859 3 2 1 -6.77981211639178 LTS-041 chr14 106304809 106866465 561657 * c(LINC00226, ADAM6, FAM30A) 0.309251291089566 20 0.142167164393115 1.04239611175995 427 0.565415695667351 4 3 1 -6.80923045894765 LTS-041 chr14 106866466 107048866 182401 * LINC00221 0.3568204439932 28 0.0965695735709884 1.85631702191065 103 0.842768711049256 6 4 2 -6.73473304020328 LTS-041 chr14 107048867 107078455 29589 * character(0) NA 0 NA 1.114 1 NA NA NA NA NA LTS-041 chr14 107078456 107170077 91622 * character(0) 0.300631670668959 5 0.0254911749434976 1.57747826630749 29 1.29120952766581 14 10 4 -6.76237815726957 LTS-041 chr14 107170078 107283157 113080 * character(0) NA 0 NA 1.04151202832968 61 0.213436298580894 3 NA NA -5.7695493423578 LTS-041 chr15 20169987 20446043 276057 * character(0) 0.371 1 NA 1.56473022217213 23 0.527833370670779 5 5 0 -5.76532447912276 LTS-041 chr15 20446044 22369597 1923554 * c(POTEB, HERC2P3, LINC01193, OR4M2, NF1P2, NBEAP1, CHEK2P2, LOC646214, CXADRP2, GOLGA6L6, LOC727924, GOLGA8CP) 0.27883685852206 31 0.134502508270972 2.15263671909426 198 1.37657835383107 8 6 2 -6.74150271272716 LTS-041 chr15 22369598 22414341 44744 * c(OR4N4, OR4N3P, LOC727924) 0.264284938185512 5 0.17497942736219 3.17984009198335 40 1.56235082877678 9 7 2 -6.73457549903156 LTS-041 chr15 22414342 23686113 1271772 * c(HERC2P7, GOLGA8DP, TUBGCP5, NIPA1, CYFIP1, LOC283683, GOLGA6L1, GOLGA8IP, WHAMMP3, GOLGA8EP, OR4N3P, HERC2P2, GOLGA6L22, REREP3, GOLGA8S, NIPA2) 0.265419362395163 16 0.111161275481467 1.80514593512133 708 0.594753672597868 5 4 1 -6.75763261838003 LTS-041 chr15 23686114 23686143 30 * character(0) 0.078 1 NA 4.419 1 NA NA NA NA NA LTS-041 chr15 23686144 23687743 1600 * character(0) NA 0 NA 2.19470745566451 13 0.627630086628283 7 NA NA -5.76441116234815 LTS-041 chr15 23687744 23688912 1169 * character(0) NA 0 NA 1.094 1 NA NA NA NA NA LTS-041 chr15 23688913 26147768 2458856 * c(SNORD116-1, SNORD116-2, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-15, SNORD116-16, SNORD116-18, SNORD116-20, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD115-2, SNORD116-26, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-9, SNORD115-10, SNORD115-11, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-17, SNORD115-22, SNORD115-25, NA NA NA NA NA NA NA NA NA LTS-041 SNORD115-26, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-44, SNORD116-28, SNORD116-29, SNORD115-48, SNORD115-24, SNORD115-27, SNORD115-28, SNORD115-45, SNORD115-47, LOC100128714, MIR4508, MIR4715, PWAR1, NPAP1, SNORD109B, SNORD115-1, PWAR4, PWARSN, IPW, NDN, MAGEL2, ATP10A, SNRPN, SNORD116-19, UBE3A, MKRN3, PWRN1, PWRN2, PWAR5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SNURF) 0.0836710447346574 16 0.0754473050104067 1.42026060124482 1046 0.549015489989425 5 5 0 -6.84976256962593 LTS-041 NA NA NA NA LTS-041 chr15 26147769 26260479 112711 * LOC100128714 NA 0 NA 0.912 1 NA NA NA NA NA LTS-041 chr15 26260480 27595661 1335182 * c(LOC100128714, GABRA5, GABRB3, GABRG3, LINC00929) 0.236459392739165 10 0.0834428613550081 0.796074214246343 309 0.212543405245104 2 2 0 -6.96028866671244 LTS-041 chr15 27595662 27725811 130150 * GABRG3 NA 0 NA 0.936 1 NA NA NA NA NA LTS-041 chr15 27725812 29418581 1692770 * c(LOC100289656, FAM189A1, GABRG3, APBA2, HERC2P9, WHAMMP2, OCA2, PDCD6IPP2, GOLGA6L7P, HERC2) 0.0518437661807541 11 0.113013595320531 1.03907957337704 805 0.433716439280092 3 3 0 -7.14728524500037 LTS-041 chr15 29418582 40823874 11405293 * c(SRP14-AS1, ANKRD63, WHAMMP1, LOC100288637, MIR1233-2, MIR3942, DPH6-AS1, MIR4510, TMCO5B, LOC100996255, RASGRP1, GPR176, CHST14, CHRM5, CHRNA7, LOC145845, TMCO5A, CSNK1A1P1, OTUD7A, SPRED1, PGBD4, FSIP1, BAHD1, FAN1, GOLGA8A, FAM189A1, LPCAT4, NUTM1, DKFZP434L187, GREM1, LOC283710, FAM98B, FMN1, IVD, C15orf52, HERC2P10, C15orf53, C15orf54, MIR211, MEIS2, TRPM1, GOLGA8B, EIF2AK4, EMC4, KLF13, PLCB2, MTMR10, NA NA NA NA NA NA NA NA NA LTS-041 ZNF770, NOP10, NSMCE3, EMC7, PAK6, AVEN, GJD2, RYR3, SCG5, C15orf56, PHGR1, GOLGA8T, SRP14, ACTC1, BUB1B, THBS1, TJP1, ANP32AP1, GOLGA8O, KATNBL1, C15orf41, DISP2, CHRFAM7A, ARHGAP11B, DPH6, C15orf57, KNSTRN, BMF, AQR, ARHGAP11A, SLC12A6) 0.113396220445354 149 0.0869019277058842 1.14537292232466 6976 0.39833106656066 3 3 0 -6.87530655270365 LTS-041 NA NA NA NA LTS-041 chr15 40823875 40824017 143 * C15orf57 NA 0 NA 0.753 1 NA NA NA NA NA LTS-041 chr15 40824018 41337080 513063 * c(RAD51-AS1, RHOV, GCHFR, RPUSD2, MRPL42P5, DLL4, INO80, PPP1R14D, RMDN3, DNAJC17, KNL1, VPS18, RAD51, C15orf62, SPINT1, CHAC1, ZFYVE19, C15orf57) 0.0739296133124186 11 0.0825510310491197 1.05431216835167 1253 0.266460809337948 3 3 0 -7.17397312779514 LTS-041 chr15 41337081 41337179 99 * INO80 NA 0 NA 1.059 1 NA NA NA NA NA LTS-041 chr15 41337180 45365792 4028613 * c(JMJD7, PLA2G4B, MIR1282, MIR4310, SERF2-C15ORF63, SERF2, CHP1, CASC4, OIP5, CKMT1B, TGM7, CATSPER2, PLA2G4E, TRIM69, TERB2, ZSCAN29, TTBK2, CDAN1, STRC, ADAL, EXD1, UBR1, PATL2, EPB42, MAPKBP1, RTF1, MGA, VPS39, CCNDBP1, PLA2G4F, LRRC57, HYPK, GANC, TMEM87A, RPAP1, TUBGCP4, PLA2G4D, PDIA3, EHD4, ITPKA, LTK, MAP1A, MFAP1, CATSPER2P1, NDUFAF1, NUSAP1, SPTBN5, CTDSPL2, INO80, CKMT1A, HAUS2, B2M, NA NA NA NA NA NA NA NA NA LTS-041 STARD9, SERINC4, ZNF106, EIF3J-AS1, SORD, MIR626, MIR627, TP53BP1, PIN4P1, OIP5-AS1, TYRO3, WDR76, TMEM62, SPG11, ELL3, CAPN3, FRMD5, EIF3J, JMJD7-PLA2G4B, SNAP23, TGM5, PPIP5K1, LCMT2) 0.169406289001763 131 0.111493469128242 0.875816844717602 7741 0.301126613030488 2 2 0 -6.79474440623046 LTS-041 NA NA NA NA LTS-041 chr15 45365793 45365846 54 * SORD NA 0 NA 0.711 1 NA NA NA NA NA LTS-041 chr15 45365847 45367016 1170 * SORD 0.107961826313527 5 0.109394698226194 0.567283568693072 39 0.74501580108052 5 5 0 -6.73774053967201 LTS-041 chr15 45367017 45384803 17787 * SORD NA 0 NA 1.327 1 NA NA NA NA NA LTS-041 chr15 45384804 45491136 106333 * c(DUOXA2, DUOX2, DUOX1, SHF, DUOXA1) 0.250962985118659 18 0.0856820387520388 0.867913988853437 566 0.272908984673246 1 1 0 -6.91652892364241 LTS-041 chr15 45491137 45544510 53374 * c(SHF, SLC28A2) NA 0 NA 1.05609983501575 14 0.170308204779995 3 NA NA -5.76663100396059 LTS-041 chr15 45544511 45545478 968 * SLC28A2 0.487 1 NA 1.46910791768731 5 0.380768039625176 4 4 0 -5.76443135258058 LTS-041 chr15 45545479 48905226 3359748 * c(MIR147B, NA, DUT, FBN1, BLOC1S6, GATM, HMGN2P46, SLC24A5, CTXN2, MYEF2, SQRDL, SLC12A1, SLC30A4, SPATA5L1, SEMA6D, C15orf48, SLC28A2) 0.425652719390417 44 0.0544553466430312 1.46055744002776 1897 0.405068314300006 4 2 2 -6.99303015086727 LTS-041 chr15 48905227 50867082 1961856 * c(GABPB1-AS1, NDUFAF4P1, MIR4716, MIR4712, SLC27A2, FAM227B, FBN1, FGF7, CEP152, EID1, GABPB1, GALK2, HDC, USP50, SHC4, TRPM7, FLJ10038, DTWD1, ATP8B4, USP8, COPS2, SECISBP2L) 0.393843899339587 31 0.107600315784803 1.35065669483276 1818 0.333404509499255 4 2 2 -6.73438834957705 LTS-041 chr15 50867083 50875445 8363 * TRPM7 NA 0 NA 1.25151328765939 25 0.372594618855399 4 NA NA -5.76468673283417 LTS-041 chr15 50875446 50878534 3089 * TRPM7 NA 0 NA 0.932 1 NA NA NA NA NA LTS-041 chr15 50878535 50878630 96 * TRPM7 0.066 1 NA 1.141 1 NA NA NA NA NA LTS-041 chr15 50878631 68125048 17246418 * c(LOC100129973, USP3-AS1, DCAF13P3, BCL2L10, MIR1272, MIR1266, MIR2116, MIR4311, IQCH-AS1, DYX1C1-CCPG1, MIR4713, MIR4511, PDCD7, MYZAP, ADAM10, DENND4A, SNAPC5, GNB5, ARPP19, CLPX, LACTB, DIS3L, LEO1, MTFMT, SLC51B, C2CD4A, FAM81A, GCOM1, LOC145783, C15orf65, C15orf61, CYP19A1, DYX1C1, MGC15885, LCTL, ZNF609, DMXL2, AP4E1, DAPK2, LYSMD2, WDR72, PYGO1, FOXB1, PRTG, LINC00926, FBXL22, SCG3, GTF2A2, TMOD3, NA NA NA NA NA NA NA NA NA LTS-041 TMOD2, ANXA2, ONECUT1, GLDN, RBPMS2, ANKDD1A, AQP9, TEX9, TNFAIP8L3, C2CD4B, KBTBD13, UBAP1L, SKOR1, LIPC, MIR190A, SMAD3, SMAD6, UNC13C, MYO1E, MYO5A, NEDD4, OAZ2, RPS27L, RSL24D1, RASL12, SPG21, HACD3, RAB8B, CSNK1G1, FAM63B, RNF111, PPIB, ZNF280D, TRPM7, VPS13C, DPP8, PARP16, TIPIN, ZWILCH, MNS1, MYO5C, MAPK6, MAP2K1, MAP2K5, FAM214A, IGDCC4, RAB27A, SNORD16, SNORD18A, SNORD18B, SNORD18C, RORA, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RPL4, IQCH, RFX7, BNIP2, SNX1, HSP90AB4P, SCARNA14, MIR628, TCF12, TPM1, CA12, ICE2, AAGAB, SLTM, SNX22, PIF1, PLEKHO2, POLR2M, VWA9, APH1B, TLN2, FAM96A, MEGF11, CILP, SPPL2A, CGNL1, RAB11A, ALDH1A2, HERC1, CCNB2, SLC24A1, CCPG1, GCNT3, LDHAL6B, TRIP4, PIGB, IGDCC3, KIAA0101, USP3) 0.142955106003117 223 0.121773401205114 0.868606871965166 14407 0.247570040454465 2 2 0 -6.97249189129125 LTS-041 NA NA NA NA LTS-041 chr15 68125049 68125502 454 * SKOR1 NA 0 NA 1.302 1 NA NA NA NA NA LTS-041 chr15 68125503 69328226 1202724 * c(MIR548H4, MIR4312, FEM1B, CORO2B, ITGA11, SPESP1, SKOR1, CLN6, NOX5, ANP32A-IT1, ANP32A, PIAS1, CALML4) 0.19877025285315 24 0.128924874203568 0.946630934451096 843 0.258356227096236 2 2 0 -6.87637098143615 LTS-041 chr15 69328227 69341504 13278 * c(MIR548H4, NOX5) NA 0 NA 0.953391807882074 39 0.197404938771936 2 NA NA -5.767494114602 LTS-041 chr15 69341505 69347625 6121 * c(MIR548H4, NOX5) NA 0 NA 1.548 1 NA NA NA NA NA LTS-041 chr15 69347626 69349983 2358 * c(MIR548H4, NOX5) 0.429 1 NA 1.30592061398788 23 0.327471387882091 4 4 0 -5.76443675820703 LTS-041 chr15 69349984 69355116 5133 * MIR548H4 0.451 1 NA 1.28176379055743 110 0.254304752392166 4 4 0 -5.76460273935973 LTS-041 chr15 69355117 69548119 193003 * c(MIR548H4, GLCE, EWSAT1) NA 0 NA 0.824 1 NA NA NA NA NA LTS-041 chr15 69548120 71507728 1959609 * c(DRAIC, CT62, GLCE, LINC00593, LRRC49, PAQR5, UACA, LARP6, THAP10, RPLP1, MIR629, TLE3, THSD4, KIF23) 0.167661870269227 6 0.139346689949923 0.909673628839853 1200 0.237704047270601 2 2 0 -6.86814697840815 LTS-041 chr15 71507729 85632659 14124931 * c(NR2E3, DNM1P35, NA, UBE2Q2P2, HCN4, ADPGK-AS1, LOXL1-AS1, MIR4313, NA, UBE2Q2L, LINC00933, ST20-MTHFS, MIR4514, MIR4513, MIR4515, SCAMP2, SNUPN, MIR5003, TSPAN3, HMG20A, CIB2, MTHFS, ARID3B, MORF4L1, ADAMTS7, CHRNA3, CHRNA5, CHRNB4, CLK3, C15orf40, SENP8, HIGD2B, TMEM266, HYKK, WHAMM, FSD2, CRABP1, CSK, NRG4, CSPG4, CTSH, CYP1A1, CYP1A2, CYP11A1, CFAP161, TBC1D21, ODF3L1, SCAMP5, GRAMD2, ETFA, FAH, NA NA NA NA NA NA NA NA NA LTS-041 TBC1D2B, MESDC2, ACSBG1, KIAA1024, TMED3, SEC11A, LINGO1-AS1, SNX33, ARIH1, SIN3A, ULK3, FBXO22, NPTN, REC114, ST20-AS1, LINC00927, CPEB1-AS1, ACTG1P17, SAXO2, LOC283731, HEXA, TMEM202, LOC338963, IDH3A, GOLGA6A, TMC3, IL16, IREB2, ISLR, GOLGA6L5P, C15orf59, GOLGA2P7, UBE2Q2P1, ANKRD34C, ADAMTS7P1, ST20, LOXL1, MIR184, MAN2C1, MPI, UBL7-AS1, GOLGA6L9, DNM1P41, LOC440300, MYO9A, NEO1, NMB, SCAPER, HDGFRP3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PDE8A, PKM, BTBD1, TM6SF1, PML, ZFAND6, SCAND2P, RPP25, COMMD4, ZSCAN2, IMP3, DNAJA4, GOLGA6B, PSMA4, C15orf39, PARP6, FAM219B, ADAMTSL3, CEMIP, ALPK3, ISLR2, PTPN9, ABHD17C, BBS4, RASGRF1, MESDC1, CPLX3, RCN2, BCL2A1, PPCDC, CELF6, STRA6, LOC642423, GOLGA6L4, CPEB1, SH3GL3, LOC645752, BNC1, SH2D7, LOC646938, GOLGA6L10, ISL2, EFTUD1P1, GOLGA6C, GOLGA6D, SCARNA15, FBXO22-AS1, MIR549A, MIR630, MIR631, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC729739, ANKRD34C-AS1, TYRO3P, EFL1, NEIL1, LMAN1L, PEAK1, THSD4, HEXA-AS1, CCDC33, EDC3, WDR61, CD276, STARD5, AP3B2, LINC00597, ADPGK, FAM103A1, MEX3B, SEMA7A, LINGO1, WDR73, UBL7, PSTPIP1, LOC91450, SLC28A1, UBE2Q2, COX5A, STOML1, HOMER2, ZNF592, ARNT2) 0.335973646691389 234 0.120362611046784 1.18013055973766 12548 0.504016067436208 3 2 1 -6.91203480327842 LTS-041 NA NA NA NA LTS-041 chr15 85632660 96883331 11250672 * c(LINC00930, MIR1276, MIR1179, MIR1469, MIR3175, PRC1-AS1, LINC01578, C15orf38-AP3S2, MIR3529, MIR5094, AP3S2, SEMA4B, CIB1, ABHD2, CHD2, AKAP13, AGBL1, LINC00924, C15orf32, HAPLN3, MESP2, LINC00052, ACAN, FES, GABARAPL3, MIR9-3HG, VPS33B, MRPL46, SLCO3A1, NTRK3-AS1, LINC00928, ANPEP, IDH2, ZNF774, ARPIN, ISG20, KIF7, ZNF710, HDDC3, GDPGP1, FAM174B, LINC01197, MIR7-2, MIR9-3, MAN2A2, MFGE8, TTLL13P, LOC440311, NA NA NA NA NA NA NA NA NA LTS-041 NTRK3, FURIN, NGRN, RHCG, PDE8A, PLIN1, POLG, DET1, FANCI, MCTP2, MESP1, UNC45A, RGMA, WDR93, RLBP1, BLM, LOC642423, KLHL25, NR2F2-AS1, AEN, CRTC3, MRPS11, NR2F2, AGBL1-AS1, ASB9P1, ST8SIA2, PEX11A, IQGAP1, TICRR, PRC1, RCCD1, SV2B) 0.385174095750149 173 0.113154422998004 1.03942299579657 6904 0.286204395782586 3 2 1 -7.04071059233436 LTS-041 NA NA NA NA LTS-041 chr15 96883332 102516492 5633161 * c(FAM138E, LOC100507472, MIR4714, SPATA8-AS1, TARSL2, LRRC28, ASB7, LYSMD4, PGPEP1L, SPATA8, ADAMTS17, DNM1P46, CERS3, ALDH1A3, CHSY1, SYNM, OR4F4, FAM169B, IGF1R, WASH3P, SPATA41, OR4F6, OR4F15, OR4F13P, MEF2A, PRKXP1, PCSK6, LINS1, SELENOS, TTC23, SNRPA1, NR2F2, HSP90B2P, LRRK1, TM2D3, ARRDC4, LINC00923) 0.297279031371683 96 0.117491582378588 0.839087609326388 3055 0.421686337806313 2 1 1 -7.10917849857807 LTS-041 chr15 102516493 102516544 52 * WASH3P NA 0 NA 1.407 1 NA NA NA NA NA LTS-041 chr16 81704 81779 76 * character(0) 0.418 1 NA 0.441 1 NA NA NA NA NA LTS-041 chr16 81780 113681 31902 * c(POLR3K, RHBDF1, SNRNP25) 0.086 1 NA 0.463887177605228 179 0.145925939522408 1 1 0 -5.81015823338119 LTS-041 chr16 113682 113780 99 * RHBDF1 NA 0 NA 0.513 1 NA NA NA NA NA LTS-041 chr16 113781 737328 623548 * c(LOC100134368, MIR3176, MIR5587, STUB1, MRPL28, WFIKKN1, PRR35, WDR90, DECR2, NHLRC4, HBA1, HBA2, HBM, HBQ1, HBZ, JMJD8, ARHGDIG, MPG, NME4, LUC7L, RAB40C, TMEM8A, RHBDF1, LINC00235, PDIA2, CAPN15, NPRL3, AXIN1, FAM234A, WDR24, METTL26, MCRIP2, RGS11, RHOT2, RHBDL1, PIGQ, RAB11FIP3) 0.223147999932973 40 0.122185136953345 0.700065661887384 2071 0.240516552615809 2 2 0 -6.98877364707263 LTS-041 chr16 737329 737427 99 * WDR24 NA 0 NA 0.672 1 NA NA NA NA NA LTS-041 chr16 737428 2672746 1935319 * c(MIR940, MIR1225, MIR3178, MIR3177, MIR3677, MIR3180-5, MIR4717, MIR4516, NUBP2, MSLN, TBL3, RNPS1, RPUSD1, TSR3, CLCN7, NOXO1, CCDC78, RNF151, FBXL16, SSTR5-AS1, ECI1, DNASE1L2, E4F1, EME2, ABCA3, MAPK8IP3, TPSD1, MEIOB, TPSG1, RAB26, GFER, SNORA64, SNORD60, NPW, BRICD5, PGP, C16orf91, HAGH, SOX8, IGFALS, PRR25, C1QTNF8, PTX4, NDUFB10, NME3, NTHL1, NTN3, AMDHD2, PDPK1, MSRB1, GNG13, ATP6V0C, NA NA NA NA NA NA NA NA NA LTS-041 PKD1, SNORA10, TBC1D24, CASKIN1, CRAMP1, RPL3L, RPS2, CHTF18, MLST8, NARFL, TPSB2, CCDC154, HS3ST6, UNKL, LINC00254, LMF1, ABCA17P, LOC652276, FAM173A, MRPS34, SSTR5, SNORA78, TPSAB1, MIR662, TSC2, UBE2I, SNHG9, CEMP1, METRN, TMEM204, C16orf59, FAHD1, WDR24, TRAF7, HAGHL, GNPTG, CACNA1H, BAIAP3, CCNF, ZNF598, HN1L, SPSB3, SYNGR3, SLC9A3R2, IFT140, TELO2) 0.245444308176749 147 0.165861650291907 0.64191879360215 5958 0.228649575909491 1 1 0 -6.96041352930952 LTS-041 NA NA NA NA LTS-041 chr16 2672747 2732840 60094 * c(ERVK13-1, KCTD5, FLJ42627, LOC652276) 0.14 1 NA 0.384292673963598 76 0.192124266712066 0 0 0 -5.7965293245697 LTS-041 chr16 2732841 2747830 14990 * KCTD5 NA 0 NA 0.491 1 NA NA NA NA NA LTS-041 chr16 2747831 3107363 359533 * c(LOC100128770, SRRM2-AS1, PRSS21, FLYWCH2, ZG16B, PRSS30P, PAQR4, BICDL2, SRRM2, PRSS33, LINC00514, PRSS41, TNFRSF12A, KCTD5, HCFC1R1, PRSS22, MMP25, TCEB2, THOC6, KREMEN2, PRSS27, FLYWCH1, CLDN6, CLDN9, PKMYT1) 0.25242056095585 37 0.113084763180827 0.661033495203639 1094 0.215536518492891 1 1 0 -6.83307207184178 LTS-041 chr16 3107364 3706277 598914 * c(MTRNR2L4, ZNF263, ZNF597, DNASE1, NLRC3, CLUAP1, OR1F2P, LINC00921, MEFV, OR1F1, OR2C1, ZSCAN32, MMP25, C16orf90, ZNF75A, ZNF174, ZNF200, ZNF205, ZNF213, NAA60, ZNF205-AS1, SLX4, ZSCAN10, TIGD7, IL32) 0.282994571765673 28 0.152178866494029 0.574869293948662 1388 0.167871811559106 1 1 0 -6.73624264500254 LTS-041 chr16 3706278 3706641 364 * DNASE1 NA 0 NA 0.7 1 NA NA NA NA NA LTS-041 chr16 3706642 5040861 1334220 * c(LINC01569, CORO7-PAM16, TRAP1, VASN, ADCY9, ANKS3, UBALD1, SEPT12, CREBBP, C16orf71, DNASE1, MGRN1, ZNF500, UBN1, CDIP1, HMOX2, C16orf96, SMIM22, PAM16, PPL, NMRAL1, SRL, TFAP4, CORO7, ROGDI, NUDT16L1, GLYR1, GLIS2, DNAJA3, SEC14L5) 0.340580178745956 47 0.12149085079549 0.64369890989544 2250 0.166905640872001 1 1 0 -7.1799354912557 LTS-041 chr16 5040862 20948136 15907275 * c(MIR365A, NPIPA5, MIR3179-2, MIR548X, MIR3180-4, NAGPA-AS1, MIR4718, COQ7, ERI2, RMI2, ACSM1, NTAN1, FOPNL, ACSM2A, DCUN1D3, IQCK, GPR139, TEKT5, C16orf89, ITPRIPL2, ABAT, EEF2KMT, EMP2, PDILT, ERCC4, PDXDC1, SMG1, ARL6IP1, CLEC16A, NOMO1, CARHSP1, MPV17L, TMEM186, RSL1D1, GP2, NOMO2, TMEM114, DEXI, GRIN2A, C16orf72, ZC3H7A, GSPT1, PKD1P1, ACSM2B, ABCC6, BCAR4, KNOP1, NOMO3, CIITA, ABCC1, MYH11, NA NA NA NA NA NA NA NA NA LTS-041 NUBP1, PARN, TXNDC11, NAGPA, BFAR, GDE1, GPRC5B, SYT17, PMM2, RRN3, RBFOX1, NDE1, ACSM5, CPPED1, DNAH3, THUMPD1, ALG1, PRM1, PRM2, C16orf62, LYRM1, MIR193B, MKL2, PRM3, TNFRSF17, MIR484, RPS15A, ACSM3, XYLT1, NPIPA3, ABCC6P1, TNP2, CLEC19A, SHISA9, ABCC6P2, UMOD, TVP23A, USP7, METTL22, TMC5, TMC7, ATF7IP2, LOC81691, SNN, PLA2G10, SOCS1, C16orf45, SNX29, NPIPA1, LITAF, KIAA0430, SEC14L5, CCP110 NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ) 0.266714619015168 153 0.147227164828015 0.612916403629205 7889 0.203785106661932 1 1 0 -7.30248228018737 LTS-041 NA NA NA NA LTS-041 chr16 20948137 20952662 4526 * DNAH3 NA 0 NA 0.497 1 NA NA NA NA NA LTS-041 chr16 20952663 23713505 2760843 * c(RRN3P3, NPIPB5, LOC100190986, SMG1P3, MIR548AA2, SNX29P1, IGSF6, CDR2, ERN2, EARS2, CRYM, VWA3A, OTOA, GGA2, NPIPB3, PDZD9, ANKS4B, EEF2K, SLC7A5P2, CRYM-AS1, NDUFAB1, METTL9, PLK1, DNAH3, POLR3E, UBFD1, TMEM159, USP31, SCNN1B, SCNN1G, SMG1P1, LOC653786, MIR548D2, RRN3P1, C16orf52, UQCRC2, ZP2, PALB2, DCTN5, COG7, HS3ST2) 0.254689906704455 38 0.173665052609517 0.582031798022213 3020 0.211157684126277 1 1 0 -6.74178232976019 LTS-041 chr16 23713506 23848762 135257 * c(ERN2, PRKCB, CHP2) 0.423 1 NA 0.563112347348569 135 0.165357935632758 1 1 0 -5.7675677589496 LTS-041 chr16 23848763 24043641 194879 * PRKCB NA 0 NA 0.432731758937987 13 0.124699741944503 1 NA NA -6.35994833052441 LTS-041 chr16 24043642 24046744 3103 * PRKCB NA 0 NA 1.024 1 NA NA NA NA NA LTS-041 chr16 24046745 30098171 6051427 * c(ATP2A1-AS1, LCMT1-AS2, SLX1B-SULT1A4, MIR4721, MIR4517, CACNG3, CDIPT, PRRT2, ATXN2L, SGF29, SLC5A11, CLN3, TMEM219, C16orf92, GSG1L, C16orf82, NSMCE1, ALDOA, XPO6, KIAA0556, QPRT, IL27, KCTD13, ASPHD1, SH2B1, SEZ6L2, NUPR1, LAT, TNRC6A, IL21R-AS1, C16orf54, INO80E, GTF3C1, ZKSCAN2, AQP8, IL4R, KIF22, SBK1, FLJ21408, MAZ, SNX29P2, SMG1P2, CDIPT-AS1, ATP2A1, IL21R, LCMT1, SLX1A, ARHGAP17, BOLA2, PPP4C, NA NA NA NA NA NA NA NA NA LTS-041 LOC554206, PRKCB, APOBR, RBBP6, LOC606724, LOC613038, RRN3P2, ZG16, SPN, SULT1A2, SULT1A1, SULT1A3, TBX6, TUFM, PAGR1, KDM8, RABEP2, SLC7A5P1, FAM57B, SPNS1, DOC2A, HIRIP3, NFATC2IP, CD19, TAOK2, HS3ST4, MVP) 0.322779656176499 98 0.143073020982479 0.750510627836947 4863 0.282909736126909 2 1 1 -7.43439931603145 LTS-041 NA NA NA NA LTS-041 chr16 30098172 31575344 1477173 * c(MIR762, SLX1B-SULT1A4, MIR4519, MIR4518, PYCARD-AS1, TMEM265, BCKDK, CD2BP2, SRCAP, CORO1A, STX1B, ZNF689, COX6A2, ZNF785, ZNF688, PRSS36, CTF1, SEPT1, ZNF48, SEPHS2, ZNF629, FUS, TBC1D10B, PYDC1, FBXL19-AS1, ZNF843, PYCARD, MYLPF, PRSS53, ITGAD, ITGAL, ITGAM, ITGAX, SMG1P2, SULT1A4, TRIM72, AHSP, ZNF771, PHKG2, FBXL19, SLX1A, BOLA2, MAPK3, PRSS8, SMG1P5, LOC606724, LOC613037, LOC613038, FBRS, C16orf58, NA NA NA NA NA NA NA NA NA LTS-041 SLC5A2, ZNF747, SNORA30, STX4, TBX6, TGFB1I1, LOC730183, PRR14, VKORC1, DCTPP1, GDPD3, ZNF768, ZNF668, ARMC5, HSD3B7, YPEL3, KAT8, CCDC189, ZNF764, BCL7C, ORAI3, ZNF646, SETD1A, RNF40) 0.289792667003723 38 0.143793009522307 1.0503266766959 4165 0.331199798857724 3 2 1 -6.91604245350583 LTS-041 NA NA NA NA LTS-041 chr16 31575345 33961292 2385948 * c(CLUHP3, ZNF267, ZNF720, SLC6A10P, LOC390705, YBX3P1, NA, LINC00273, TP53TG3D) 0.276071984918372 13 0.125843461979862 0.942110027178657 451 0.380210739220081 2 2 0 -7.11190195113644 LTS-041 chr16 33961293 33961334 42 * LINC00273 0.279 1 NA 2.167 1 NA NA NA NA NA LTS-041 chr16 33961335 33962379 1045 * LINC00273 0.323032694788557 64 0.101877064444951 1.93543697991892 84 0.942071498639291 13 9 4 -6.73355085128887 LTS-041 chr16 33962380 33965652 3273 * LINC00273 0.421359248754302 3 0.0297377425729212 0.689345160757044 21 0.161896616041578 2 1 1 -7.22963863737834 LTS-041 chr16 33965653 34682380 716728 * c(LINC01566, UBE2MP1) NA 0 NA 0.721102204047155 115 0.207564379837363 2 NA NA -5.99910741541185 LTS-041 chr16 46508169 46602819 94651 * ANKRD26P1 0.303 1 NA 0.5501903475887 97 0.199789835883452 1 1 0 -5.768843264172 LTS-041 chr16 46602820 70874094 24271275 * c(CDH3, SNORD111B, VAC14-AS1, CDH5, MIR1538, MIR1972-1, MIR3935, LINC00919, LINC00920, SMG1P7, LOC100506083, LOC100507577, CKLF-CMTM1, CDH8, MIR548AE2, CDH11, CDH16, NUTF2, IRX5, DNAJA2, KATNB1, CES1, CTCF, CETP, NFAT5, NUDT21, WWP2, DDX19B, ADCY7, CMTM1, EXOSC6, NRN1L, CMTM3, C16orf78, ANKRD26P1, SNX20, CNGB1, CSNK2A2, ZFP90, CARMIL2, KCTD19, CMTM4, CMTM2, BEAN1, IL34, TMED6, CTRL, CYLD, AARS, NQO1, NA NA NA NA NA NA NA NA NA LTS-041 DYNC1LI2, AGRP, E2F4, FUK, CPNE2, ADGRG5, PRSS54, CES5A, ADGRG3, CNOT1, ZNF423, RPGRIP1L, SF3B3, CES3, ARL2BP, ORC6, EDC4, PLA2G15, CNEP1R1, COG4, PLEKHG4, DKFZP434H168, LRRC29, AMFR, VPS4A, TOX3, GNAO1, GOT2, TERB1, CES4A, EXOC3L1, LOC283856, LINC00922, PDXDC2P, CLEC18C, NOB1, CCDC113, TMEM208, CFAP20, FHOD1, BRD7, ZDHHC1, HAS3, MT1DP, HSD11B2, HSF4, CLEC18A, TEPP, KIFC3, C16orf87, C16orf97, LOC388282, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 C16orf86, CES1P2, LCAT, MIR138-2, MIR140, MMP2, MMP15, MIR328, MT1A, MT1B, MT1E, MT1F, MT1G, MT1H, MT1JP, MT1M, MT1L, MT1X, MT2A, MT3, NFATC3, PARD6A, PLLP, CKLF, NIP7, FAM96B, TPPP3, CES1P1, PHKB, POLR2C, PRMT7, HYDIN, DUS2, CHTF8, LPCAT2, HEATR3, PDPR, SLC38A7, OGFOD1, LRRC36, DDX19A, FBXL8, SMPD3, VAC14, DOK4, VPS35, DDX28, TSNAXIP1, PSKH1, PSMB10, COQ9, CIAPIN1, THAP11, PDP2, ZNF319, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RANBP10, BBS2, RBL2, RRAD, SALL1, CCL17, CCL22, CX3CL1, NOD2, PDF, DPEP2, DPEP3, PAPD5, CASC16, LOC643802, CRNDE, AKTIP, MT1IP, APOOP5, SIAH1, GINS3, ST3GAL2, NDRG4, ACD, SLC6A2, KIAA0895L, SLC9A5, SLC12A3, SLC12A4, SNTB2, SNORA46, SNORA50A, SNORD111, TERF2, TK2, CA7, FTO, IRX6, IRX3, FAM65A, TANGO6, USB1, ELMO3, SHCBP1, SETD6, ESRP2, FAM192A, CENPT, CHD9, C16orf70, CYB5B, ITFG1, GFOD2, NETO2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LONP2, ENKD1, SLC7A6OS, NLRC5, DRC7, CAPNS2, COG8, MT4, GPT2, B3GNT9, UTP4, ABCC11, NKD1, CBFB, CBLN1, TRADD, CES2, NAE1, NOL3, RSPRY1, SLC7A6, ATP6V0D1, MYLK3, MTSS1L, ADGRG1, CCDC102A, ABCC12, N4BP1, NUP93, HERPUD1, CDH1) 0.216595023568674 233 0.138007111604211 0.609678336421571 17748 0.674509040676958 1 1 0 -6.91038903052532 LTS-041 NA NA NA NA LTS-041 chr16 70874095 70883626 9532 * HYDIN NA 0 NA 0.898 1 NA NA NA NA NA LTS-041 chr16 70883627 71196616 312990 * HYDIN 0.326539553002733 76 0.0675595474832414 0.896075719954411 561 0.294157892832161 3 2 1 -7.02138584693938 LTS-041 chr16 71196617 71209483 12867 * HYDIN NA 0 NA 0.66 1 NA NA NA NA NA LTS-041 chr16 71209484 73521306 2311823 * c(SNORA70D, LINC01568, CHST4, AP1G1, DHODH, PHLPP2, HCCAT5, HP, HPR, ATXN1L, PKD1L3, ZFHX3, HYDIN, TXNL4B, ZNF821, CMTR2, TAT, SNORD71, ZNF19, ZNF23, CALB2, PMFBP1, MARVELD3, DHX38, IST1) 0.22010394226516 55 0.137510092681321 0.606649944569024 2072 0.216993928223975 1 1 0 -6.88059188316018 LTS-041 chr16 73521307 73521455 149 * character(0) NA 0 NA 1.012 1 NA NA NA NA NA LTS-041 chr16 73521456 74808425 1286970 * c(MLKL, GLG1, LOC283922, CLEC18B, RFWD3, PSMD7, FA2H) 0.305552249747577 12 0.0837019875945173 0.84320343436523 597 0.226915872774791 2 1 1 -7.32834561509374 LTS-041 chr16 74808426 74920191 111766 * c(FA2H, WDR59) 0.129 1 NA 0.80532245718256 25 0.201912786453294 2 2 0 -5.7678775007951 LTS-041 chr16 74920192 90161231 15241040 * c(VPS9D1-AS1, LOC100129617, URAHP, SYCE1L, LOC100287036, MIR1910, MIR3182, C16orf95, MIR4720, MIR4722, MIR4719, MIR5093, MIR5189, CDH13, CDH15, CLEC3A, MPHOSPH6, EMC8, TUBB3, CFDP1, PRDM7, GABARAPL2, PKD1L2, RNF166, C16orf46, DNAAF1, SPATA2L, SPATA33, ZC3H18, CDYL2, TMEM170A, COX4I1, SLC38A8, SLC22A31, FLJ30679, LOC146513, CTRB1, CYBA, ZFPM1, ADAD2, ZFP1, ADAMTS18, AFG3L1P, DPEP1, SNAI3-AS1, LINC00311, LDHD, NA NA NA NA NA NA NA NA NA LTS-041 ZNF778, ACSF3, FANCA, MON1B, FOXF1, TCF25, FOXL1, FOXC2, ZCCHC14, GSE1, ATMIN, COTL1, MLYCD, ADAT1, CHST5, GALNS, GAS8, GCSH, CPNE7, IL17C, LINC00304, NUDT7, ANKRD11, OSGIN1, HSBP1, HSD17B2, SNAI3, FAM92B, IRF8, CTU2, APRT, KARS, PABPN1L, LOC400548, FENDRR, LOC400558, C16orf74, MAF, MC1R, CHST6, CTRB2, MVD, CHMP1A, GINS2, TRAPPC2L, WWOX, PLCG2, BCO1, TERF2IP, NECAB2, KLHDC4, DEF8, BANP, ZDHHC7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CENPN, CMC2, JPH3, VAT1L, TLDC1, WFDC1, SNORD68, RPL13, MTHFSD, SPG7, LINC00917, GAS8-AS1, CA5A, DBNDD1, TMEM231, WDR59, KLHL36, FBXO31, CMIP, GAN, SLC7A5, CDT1, MAP1LC3B, DYNLRB2, HSDL1, CRISPLD2, SPIRE2, ZNF469, ZNRF1, CNTNAP4, CDK10, CBFA2T3, MBTPS1, TAF1C, USP10, CENPBD1, ZNF276, KCNG4, SDR42E1, BCAR1, VPS9D1, KIAA0513, PIEZO1, ATP2C2) 0.150314776356548 411 0.113572340460669 0.893365499055885 10476 0.456691351680538 2 2 0 -6.95409656929881 LTS-041 NA NA NA NA LTS-041 chr16 90161232 90161242 11 * character(0) NA 0 NA 1.382 1 NA NA NA NA NA LTS-041 chr17 6004 181474 175471 * c(LOC100506388, DOC2B, RPH3AL) 0.185 1 NA 0.989450434067688 101 0.21569817333533 3 3 0 -5.79168968208187 LTS-041 chr17 181475 10223697 10042223 * c(LOC100128288, C17orf107, LOC100130950, DBIL5P, MIR1253, PITPNA-AS1, MIR3183, MIR4314, NA, LOC100506388, ALOX12-AS1, MIR497HG, RNASEK-C17orf49, TMEM256-PLSCR3, SENP3-EIF4A1, P2RX5-TAX1BP3, MIR4520-1, MIR4521, MIR4520-2, ALOX15P1, LOC101559451, CLEC10A, MYBBP1A, PRPF8, KIF1C, CHD3, SAT2, GABARAP, CHRNB1, CHRNE, SMYD4, CNTROB, RPL29P2, CYB5D1, OVCA2, USP43, KRBA2, SLC43A2, CYB5D2, ZFP3, GGT6, SPNS2, WDR81, CLDN7, NA NA NA NA NA NA NA NA NA LTS-041 CRK, DNAH2, RTN4RL1, CFAP52, CCDC42, PIK3R6, ODF4, KCTD11, CTNS, MFSD6L, TRPV3, SLC16A11, FBXO39, DLG4, DPH1, DVL2, EFNB3, EIF5A, DHRS7C, SLC16A13, C17orf74, SPNS3, ENO3, FGF11, NLRP1, ARHGEF15, RAP1GAP2, CAMTA2, KDM6B, ZZEF1, CLUH, SMG6, WSCD1, CTDNEP1, PIK3R5, ELP5, SHPK, AIPL1, ALOX12, ALOX12B, ALOX12P2, ALOX15, ALOX15B, TMEM256, BCL6B, RNF167, SENP3, OR1A2, SNORA67, PELP1, GP1BA, LOC284009, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 VMO1, LOC284023, LINC00324, SLC13A5, TMEM102, TUSC5, GPS2, ABR, RANGRF, TIMM22, GUCY2D, TAX1BP3, HIC1, LOC339166, TMEM95, SMTNL2, RFLNB, ITGAE, ACADVL, SPEM1, GLTPD2, INCA1, SCIMP, SPDYE4, OR3A4P, SLC25A35, C17orf97, MED11, MIR132, MIR212, MIR22, TNFSF12-TNFSF13, ARRB2, ASGR1, ASGR2, MNT, MIR324, ASPA, MYH10, MYO1C, ATP1B2, ATP2A3, NUP88, OR1D2, OR3A1, OR3A2, P2RX1, P2RX5, PAFAH1B1, MINK1, GEMIN4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MED31, DERL2, GLOD4, YBX2, ANKFY1, SERPINF1, INPP5K, PER1, PFAS, PFN1, PITPNA, PLD2, SERPINF2, POLR2A, FAM64A, XAF1, BORCS6, SLC52A1, WRAP53, MRM3, VPS53, NCBP3, TSR1, DHX33, PSMB6, PLSCR3, MIR497, NLGN2, ZBTB4, CXCL16, TRAPPC1, ALOXE3, RCVRN, RPA1, RPL26, SRR, NXN, SLC35G6, RNF222, SHBG, SLC2A4, SNORA48, SNORD10, OR1D4, SOX15, SCARNA21, VAMP2, SNORD91A, SNORD91B, C1QBP, TP53, BHLHA9, TLCD2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC728392, UBE2G1, TRPV1, YWHAE, ZNF232, MIS12, METTL16, PHF23, FAM57A, CTC1, NDEL1, PITPNM3, EMC6, RILP, TEKT1, OR1A1, OR1D5, OR1E1, OR1E2, OR1G1, GSG2, OR3A3, SLC25A11, ZMYND15, CAMKK1, RPAIN, TMEM107, NAA38, NEURL4, ZNF594, HES7, SPATA22, TXNDC17, MIR22HG, GAS7, SCARF1, TNK1, MYH13, TNFSF13, TNFSF12, TM4SF5, USP6, RABEP1, KCNAB3, AURKB, TMEM88, GLP2R, NTN1, STX8, RPH3AL, FXR2, MPDU1, SPAG7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CD68, ACAP1, KIAA0753, SGSM2) 0.127784793495928 422 0.107847017428895 1.00874057232986 16598 0.347739334901126 3 3 0 -7.13563775627314 LTS-041 NA NA NA NA LTS-041 chr17 10223698 10223713 16 * MYH13 NA 0 NA 0.912 1 NA NA NA NA NA LTS-041 chr17 10223714 15469190 5245477 * c(MIR744, LINC00675, MAGOH2P, TVP23C-CDRT4, MIR4731, COX10-AS1, TMEM220-AS1, COX10, CDRT15, DNAH9, TVP23C, LINC00670, CDRT4, TMEM220, SHISA6, MYH1, MYH2, MYH3, MYH4, MYH8, PMP22, ADPRM, ELAC2, SCO1, MAP2K4, PIRT, TEKT3, ZNF18, MGC12916, MYH13, MYOCD, CDRT7, CDRT15P1, ARHGAP44, HS3ST3B1, HS3ST3A1) 0.1123571120146 56 0.0756556021050003 0.953263394739899 2941 0.287101526412425 3 3 0 -7.58464605767092 LTS-041 chr17 15469191 15476375 7185 * TRIM16 0.120095567535307 4 0.0709201428838568 0.572205393086974 62 0.343668391014578 4 4 0 -6.76075727041669 LTS-041 chr17 15476376 16638086 1161711 * c(MIR1288, TRIM16, LRRC75A-AS1, ZSWIM7, ADORA2B, USP32P1, CENPV, SNORD49A, TBC1D26, CDRT1, LRRC75A, MEIS3P1, TRPV2, TTC19, ZNF286A, ZNF287, ZNF624, CDRT15P2, SNORD49B, SNORD65, UBB, PIGL, NCOR1, CCDC144A) 0.149598487607298 36 0.101150179091086 0.938275951999254 1393 0.260689236589585 2 2 0 -6.94923851683776 LTS-041 chr17 16638087 16638566 480 * c(USP32P1, CCDC144A) NA 0 NA 1.239 1 NA NA NA NA NA LTS-041 chr17 16638567 16734803 96237 * c(FAM106CP, USP32P1, KRT16P2, CCDC144A) NA 0 NA 1.69667022143275 41 0.717056330066059 5 NA NA -5.76460572470823 LTS-041 chr17 16734804 16796652 61849 * KRT16P2 NA 0 NA 0.951 1 NA NA NA NA NA LTS-041 chr17 16796653 18315385 1518733 * c(PEMT, RAI1, MIEF2, SMCR5, SMCR8, NA, TOM1L2, DRG2, FLCN, PLD6, FLII, MPRIP, TNFRSF13B, LLGL1, MYO15A, RASD1, ALKBH5, MED9, NT5M, EVPLL, SHMT1, SREBF1, MIR33B, TOP3A, GID4, DRC3, COPS3, ATPAF2) 0.179316210849421 36 0.111251581048155 1.03728258631318 2707 0.254640068678044 3 3 0 -6.83965520834029 LTS-041 chr17 18315386 18378810 63425 * c(KRT17P5, KRT16P1) NA 0 NA 0.135 1 NA NA NA NA NA LTS-041 chr17 18378811 18456685 77875 * c(USP32P2, CCDC144B, LGALS9C, FAM106A) 0.139460538743748 2 0.168998520703585 0.183093464733148 66 0.21352738752077 0 0 0 -8.15687222792728 LTS-041 chr17 18456686 18483255 26570 * CCDC144B NA 0 NA 1.634 1 NA NA NA NA NA LTS-041 chr17 18483256 18882663 399408 * c(FBXW10, SLC5A10, TRIM16L, FOXO3B, TBC1D28, CCDC144B, TVP23B, PRPSAP2, FAM83G, ZNF286B) 0.264734817687717 20 0.0866514342214344 0.908941901668074 712 0.352336613288922 1 1 0 -7.10417344092603 LTS-041 chr17 18882664 21087671 2205008 * c(LOC100287072, MIR1180, EPN2-AS1, EPN2-IT1, GRAP, AKAP10, SLC5A10, SLC47A2, ALDH3A1, ALDH3A2, EPN2, USP22, CDRT15L2, DHRS7B, B9D1, LGALS9B, CCDC144NL, CCDC144CP, GRAPL, MFAP4, SLC47A1, MAPK7, FAM83G, KRT16P3, SNORA59A, RNF112, SPECC1, ULK2) 0.123109344452038 5 0.117462760056113 1.00899195737521 1806 0.317412200405902 3 3 0 -6.86244288209682 LTS-041 chr17 21087672 21117589 29918 * c(DHRS7B, TMEM11) 0.414 1 NA 0.9705939051151 39 0.223968081999168 3 3 0 -5.77038572179801 LTS-041 chr17 21117590 21202223 84634 * c(NATD1, MAP2K3, TMEM11) 0.411970076173192 6 0.0574366317489689 1.00119582520179 65 0.405031458298659 2 1 1 -6.80529053853256 LTS-041 chr17 21202224 21202237 14 * MAP2K3 0.44 1 NA 1.403 1 NA NA NA NA NA LTS-041 chr17 21202238 21431759 229522 * c(C17orf51, KCNJ12, MAP2K3) 0.343896555252659 56 0.0975827703947889 1.37428041371456 213 0.69447558940051 6 4 2 -6.76563706542346 LTS-041 chr17 21431760 22066835 635076 * c(MTRNR2L1, FAM27E5, FLJ36000, C17orf51) 0.293213221791029 11 0.1324372235507 1.01231602747353 197 0.352894055694767 3 2 1 -6.93065452473657 LTS-041 chr17 22066836 22066858 23 * character(0) NA 0 NA 0.725 1 NA NA NA NA NA LTS-041 chr17 25620838 25957334 336497 * c(MIR4522, WSB1, TBC1D3P5, KSR1) 0.125 1 NA 1.01371022887631 287 0.23319940637666 3 3 0 -5.79163208852379 LTS-041 chr17 25957335 26689674 732340 * c(MIR4723, TMEM199, LYRM9, SARM1, PPY2P, PYY2, POLDIP2, TMEM97, KRT18P55, LGALS9, NOS2, NLK, TNFAIP1, IFT20) 0.198853368579441 5 0.173867190694507 1.05197473164568 672 0.299616325280458 3 3 0 -6.79849036604806 LTS-041 chr17 26689675 26689816 142 * SARM1 NA 0 NA 0.895 1 NA NA NA NA NA LTS-041 chr17 26689817 29249132 2559316 * c(MIR3184, SPAG5-AS1, MIR4523, MIR451B, MIR4732, NARR, SPAG5, SLC46A1, ABHD15, TLCD1, SGK494, SEZ6, ANKRD13B, CPD, CRYBA1, PROCA1, DHRS13, LRRC37BP1, ALDOC, SARM1, FLOT2, TBC1D29, ERAL1, SNORD4B, SNORD4A, SNORD42B, SNORD42A, NEK8, GIT1, EFCAB5, TMIGD1, MYO18A, MIR144, SUZ12P1, MIR423, PIPOX, CRLF3, FAM222B, ADAP2, MIR451A, NUFIP2, TAOK1, PHF12, RPL23A, SDF2, BLMH, SEBOX, SH3GL1P2, SLC6A4, SUPT6H, VTN, NA NA NA NA NA NA NA NA NA LTS-041 TEFM, ATAD5, RAB34, NSRP1, FOXN1, CORO6, SSH2, TP53I13, SLC13A2, UNC119, TIAF1, PIGS, GOSR1, TRAF4, KIAA0100) 0.134939203774604 48 0.113685485562844 0.902880687638726 4458 0.253170591649459 2 2 0 -6.9881518903328 LTS-041 NA NA NA NA LTS-041 chr17 29249133 29249973 841 * ADAP2 NA 0 NA 0.771 1 NA NA NA NA NA LTS-041 chr17 29249974 30192492 942519 * c(MIR365B, MIR4724, MIR4733, MIR4725, EVI2A, EVI2B, MIR193A, NF1, OMG, DPRXP4, COPRS, ADAP2, UTP6, RNF135, RAB11FIP4) 0.191745367114732 25 0.108805606473196 0.779333178463503 1004 0.306918384334932 2 2 0 -6.77001529542392 LTS-041 chr17 30192493 30195028 2536 * UTP6 NA 0 NA 0.538 1 NA NA NA NA NA LTS-041 chr17 30195029 33329822 3134794 * c(AA06, CCT6B, LRRC37B, TMEM132E, SPACA3, RHBDL3, SUZ12, TMEM98, LIG3, ASIC2, C17orf102, MYO1D, ARGFXP2, RHOT1, UTP6, PSMD11, CCL1, CCL2, CCL7, CCL8, CCL11, CCL13, C17orf75, SH3GL1P1, MIR632, ZNF207, CDK5R1, ZNF830) 0.216969586159267 27 0.133991080623337 0.690531109669725 1847 0.18752533397483 1 1 0 -8.10906872607855 LTS-041 chr17 33329823 33329990 168 * LIG3 NA 0 NA 0.598 1 NA NA NA NA NA LTS-041 chr17 33329991 34431410 1101420 * c(SLFN12L, RAD51L3-RFFL, RFFL, C17orf50, SLFN13, SLC35G3, UNC45B, SLFN5, AP2B1, RDM1, GAS2L2, HEATR9, SLFN14, CCL15-CCL14, LIG3, PEX12, NLE1, FNDC8, SLFN12, LYZL6, RAD51D, CCL3, CCL4, CCL5, CCL14, CCL15, CCL16, CCL18, CCL23, SNORD7, MMP28, TAF15, SLFN11, RASL10B) 0.221673309715411 17 0.138536892516886 0.604919520505727 1933 0.190847401441647 1 1 0 -6.85028719330921 LTS-041 chr17 34431411 34431996 586 * CCL4 NA 0 NA 0.356 1 NA NA NA NA NA LTS-041 chr17 34431997 34625714 193718 * c(CCL4L1, TBC1D3B, TBC1D3C, CCL3L3, CCL3L1, CCL4, NA) NA 0 NA 0.338436391508491 41 0.231264371999012 0 NA NA -5.77091768958402 LTS-041 chr17 34625715 34640930 15216 * c(CCL4L1, CCL3L3, CCL3L1, NA) NA 0 NA 0.941 1 NA NA NA NA NA LTS-041 chr17 34640931 36214044 1573114 * c(MIR2909, DDX52, DUSP14, SYNRG, AATF, PIGW, C17orf78, YWHAEP7, ACACA, CCL4L1, LHX1, NA, TADA2A, HNF1B, TBC1D3H, DHRS11, GGNBP2, MRM1, MYO19, ZNHIT3) 0.218181791717906 33 0.147341022440933 0.656038940363459 1570 0.541432844697618 1 1 0 -6.86911187887067 LTS-041 chr17 36214045 36214813 769 * YWHAEP7 NA 0 NA 0.368 1 NA NA NA NA NA LTS-041 chr17 36214814 36398345 183532 * c(YWHAEP7, LOC440434) 0.356055265552971 4 0.121134911015226 0.33617813741018 71 0.213943837004841 0 0 0 -6.79549312182538 LTS-041 chr17 36398346 36421726 23381 * LOC440434 NA 0 NA 0.536 1 NA NA NA NA NA LTS-041 chr17 36421727 43555513 7133787 * c(LINC00910, LOC100131347, KRTAP4-9, KRTAP4-7, MAP3K14-AS1, HDAC5, C17orf96, RAMP2-AS1, MIR2117, LINC00672, LRRC3C, KRTAP9-7, KRTAP16-1, LOC100505782, KRTAP9-6, GJC1, KRTAP29-1, MIR4728, MIR4726, MIR4734, MIR4727, MIR5010, LINC00854, PTGES3L, PTGES3L-AARSD1, SNORD124, PSME3, EIF1, NBR2, RAMP2, VAT1, P3H4, HEXIM1, C1QL1, RUNDC3A, STARD3, PLCD3, TMEM106A, NT5C3B, CCR7, ZPBP2, SPATA32, HEXIM2, LSM12, CCDC43, CNTD1, NA NA NA NA NA NA NA NA NA LTS-041 GJD3, KRT222, KRT40, CNP, CSF3, CD300LG, KIF18B, RUNDC1, LINC00974, WIPF2, KRT25, TMEM99, NAGS, FAM134C, KRT28, DHX8, DUSP3, KRT24, ZNF385C, ERBB2, ETV4, EZH1, CASC3, IKZF3, GPATCH8, KCNH4, FAM215A, GAST, FZD2, G6PC, KRT23, KAT2A, GFAP, TUBG2, CCR10, C17orf105, FAM171A2, MEIOC, CISD3, GSDMA, KRT42P, PTRF, NKIRAS2, GRB7, COA3, GRN, PSMC3IP, HCRT, SOCS7, AOC2, KLHL10, HSD17B1, ASB16-AS1, MSL1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 KRT27, LRRC37A11P, STAC2, IFI35, IGFBP4, KRT26, ITGA2B, JUP, ARL4D, KRT9, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT19, KRT31, KRT32, KRT33A, C17orf98, LINC00671, CCDC103, KRT33B, KRT34, KRT35, ARL5C, KRT39, LASP1, NBR1, ADAM11, MEOX1, MLLT6, MPP2, MPP3, LOC440434, GPR179, NAGLU, ACLY, NEUROD2, NMT1, FBXO47, SOST, RAPGEFL1, SLC25A39, HIGD1B, CDK12, ATP6V0A1, PNMT, KRT20, MED1, CWC25, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 KLHL11, PPY, GSDMB, PSMB3, PYY, ATXN7L3, PSMD3, PLXDC1, ARHGAP23, RAB5C, RARA, FKBP10, RPL19, RPL27, SNORA21, SLC4A1, WNK4, KRTAP4-11, SMARCE1, BRCA1, STAT3, STAT5A, STAT5B, MLX, THRA, TOP2A, DNAJC7, KRTAP4-8, KRTAP1-4, KRTAP2-2, TUBG1, KRTAP9-1, KRTAP2-3, UBTF, FMNL1, PCGF2, CACNB1, C17orf53, TMUB2, DHX58, ACBD4, DCAKD, PLEKHH3, DBF4B, COASY, SRCIN1, AARSD1, RND2, KRTAP1-3, KRTAP1-1, KRTAP9-9, KRTAP4-6, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 KRTAP2-1, TTC25, KRTAP4-12, KRTAP1-5, KRTAP3-1, KRTAP3-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP17-1, PIP4K2B, PPP1R1B, MIEN1, MRPL45, VPS25, TMEM101, GHDC, KRTAP4-4, TNS4, FBXL20, CNTNAP1, KRTAP9-4, KRTAP4-1, KRTAP4-5, KRTAP4-3, KRTAP4-2, KRTAP3-3, KRTAP2-4, TCAP, AOC3, BECN1, KRT38, KRT37, KRT36, HAP1, MAP3K14, AOC4P, G6PC3, ASB16, PGAP3, EFTUD2, RPL23, HSPB9, ORMDL3, NR1D1, MED24, CDC6) 0.207739032516781 314 0.141517710042066 0.672870855525569 14821 0.22560502606557 1 1 0 -8.265091929846 LTS-041 NA NA NA NA LTS-041 chr17 43555514 43559777 4264 * character(0) NA 0 NA 1.091 1 NA NA NA NA NA LTS-041 chr17 43559778 45886049 2326272 * c(MIR5089, OSBPL7, EFCAB13, TBX21, ITGB3, KPNB1, RPRML, MYL4, MRPL45P2, WNT3, WNT9B, NPEPPS, GOSR2, TBKBP1, CDC27) 0.294881093889658 101 0.0884937711070812 0.869375724821754 1677 0.25736645889952 2 1 1 -7.41510217460791 LTS-041 chr17 45886050 45886247 198 * OSBPL7 NA 0 NA 0.962 1 NA NA NA NA NA LTS-041 chr17 45886248 55123748 9237501 * c(MIR1203, TOM1L1, MIR3185, MIR3614, C17orf112, HOXB-AS1, TOB1, SLC35B1, CALCOCO2, HOXB13, IGF2BP1, CBX1, CHAD, KAT7, NXPH3, SNF8, OSBPL7, WFIKKN2, FLJ40194, B4GALNT2, MRPL10, COL1A1, COX11, EME1, ANKFN1, TMEM92, PHOSPHO1, DLX3, DLX4, SAMD14, ZNF652, MMD, MTVR2, STXBP4, CACNA1G-AS1, TAC4, GIP, GNGT2, TTLL6, LOC284080, SNX11, HLF, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, C17orf67, NA NA NA NA NA NA NA NA NA LTS-041 PRAC2, ITGA3, HILS1, RNF126P1, TOB1-AS1, HOXB-AS3, MIR10A, MIR152, MIR196A1, NFE2L1, NGFR, NME1, NME2, UTP18, ABI3, COPZ2, MRPL27, ATP5G1, PDK2, LUC7L3, PHB, MBTD1, LINC00483, EPN3, PNPO, TMEM100, RSAD1, LRRC59, CA10, PCTP, SCPEP1, XYLT2, SGCA, SPATA20, UBE2Z, NME1-NME2, SP2, FLJ45513, TRIM25, PRR15L, ACSF2, CDK5RAP3, SP6, FAM117A, COIL, SPOP, MYCBPAP, PRAC1, KIF2B, PPP1R9B, DGKE, SKAP1, ABCC3, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CACNA1G, SPAG9, LRRC46, SCRN2, ANKRD40, NOG) 0.178770883433542 129 0.119699091799058 0.971259595482278 7188 0.279613062465113 3 3 0 -7.76589254977957 LTS-041 NA NA NA NA LTS-041 chr17 55123749 55183195 59447 * c(RNF126P1, AKAP1) 0.046 1 NA 1.15151785046626 25 0.404912327959193 3 3 0 -5.76478731427985 LTS-041 chr17 55183196 70117584 14934389 * c(SNORA38B, LINC00674, TSPOAP1-AS1, MIR4729, MIR4737, MIR4736, MIR4524A, MIR3064, MIR5047, MIR4524B, DCAF7, ABCA10, ABCA9, ABCA8, APPBP2, GNA13, TLK2, POLG2, DDX42, FTSJ3, CLTC, HSF5, OR4D2, MSI2, C17orf64, DYNLL2, CSH1, CSH2, CSHL1, TCAM1P, EFCAB3, LOC146880, CYB561, MARCH10, ACE, DDX5, CEP112, AMZ2P1, ERN1, BPTF, PPM1E, ARSG, ABCA6, ABCA5, NOL11, TANC2, PITPNC1, OR4D1, GH1, GH2, CACNG5, CACNG4, NA NA NA NA NA NA NA NA NA LTS-041 C17orf58, MILR1, C17orf47, GDPD1, ICAM2, METTL2A, NACA2, SKA2, APOH, LRRC37A3, KCNJ2, KCNJ16, KPNA2, YPEL2, C17orf82, KCNJ2-AS1, LPO, CUEDC1, MIR142, MIR21, MIR301A, MAP3K3, MPO, TBC1D3P2, PLEKHM1P1, LOC440461, TRIM37, RNFT1, TUBD1, TACO1, AMZ2, MRPS23, PTRH2, PECAM1, SEPT4, FAM20A, BCAS3, RNF43, MKS1, WIPI1, SMG8, MSX2P1, PRKAR1A, PRR11, PRKCA, TEX2, MAP2K6, TEX14, CCDC47, PSMC5, PSMD12, INTS2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 RAD51C, RPS6KB1, SCN4A, HEATR6, SRSF1, WFDC21P, SMURF2, TBC1D3P1-DHX40P1, LOC653653, SMARCD2, SOX9, SCARNA20, SNORA50C, SUPT4H1, TBX2, SNORD104, MIR634, MIR635, LOC729683, CA4, MIR454, VEZF1, CACNG1, DHX40, LIMD2, KCNH6, AKAP1, VMP1, EPX, AXIN2, BRIP1, USP32, PPM1D, RGS9, CEP95, MTMR4, SLC16A6, STRADA, PRR29, TSPOAP1, TBX4, CD79B, MRC2, HELZ, MED13) 0.137712190659128 118 0.115240833613787 0.960451004882303 9513 0.291414846380694 2 2 0 -8.2645453177127 LTS-041 NA NA NA NA LTS-041 chr17 70117585 72691356 2573772 * c(CD300LD, LINC00673, CD300C, CD300A, CD300LB, KIF19, CD300LF, C17orf77, SLC39A11, CDC42EP4, LINC00469, RAB37, CD300E, GPR142, BTBD17, LINC00511, LOC400620, SDK2, C17orf80, GPRC5C, RPL38, CPSF4L, DNAI2, SOX9, SSTR2, FAM104A, MGC16275, COG1, TTYH2) 0.109737407597565 33 0.0710179634765996 1.03594118685458 1736 0.345240055922584 3 3 0 -6.94276387531806 LTS-041 chr17 72691357 80363378 7672022 * c(LOC100130370, SMIM6, TNRC6C-AS1, C17orf99, LOC100287042, LOC100294362, MIR1250, MIR4316, MIR3065, MIR3186, MIR3678, MIR3615, RNF157-AS1, SNHG16, LOC100507351, C1QTNF1-AS1, MIR4739, MIR4738, MIR4740, MIR4730, CEP295NL, LOC100996291, DNAH17-AS1, CDK3, ALYREF, BAIAP2, ATP5H, ST6GALNAC2, SEPT9, TMC6, CYGB, RNF157, C1QTNF1, PPP1R27, METTL23, SLC38A10, CANT1, USH1G, TBC1D16, AFMID, CSNK1D, MGAT5B, TEPSIN, RBFOX3, NA NA NA NA NA NA NA NA NA LTS-041 CD300LF, SLC25A10, NOTUM, TMC8, AANAT, CENPX, LRRC45, TRIM65, UNC13D, EVPL, FASN, FDXR, CEP131, FOXJ1, GGA3, JMJD6, EXOC7, KCTD2, WBP2, GAA, MYADML2, NPB, FSCN2, GALK1, NAT9, GCGR, UTS2R, FADS6, HID1, TSEN54, UBALD2, TMEM235, CCDC57, SLC26A11, ENDOV, NDUFAF8, LINC00482, TMEM105, GPS1, GRB2, GRIN2C, SAP30BP, H3F3B, NT5C, CDR2L, RAB37, BIRC5, ENPP7, OXLD1, CCDC137, ARL16, MRPL58, OTOP3, MCRIP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ZACN, ITGB4, AATK-AS1, LGALS3BP, ARHGDIA, LLGL2, FLJ45079, TEX19, MAFG, MXRA7, BAIAP2-AS1, MIR338, NPTX1, P4HB, ACOX1, MRPS7, HN1, DCXR, PDE6G, ANAPC11, SIRT7, TMEM104, CCDC40, NPLOC4, ST6GALNAC1, PRPSAP1, CBX8, MIF4GD, CASKIN2, RPTOR, BAHCC1, USP36, RNF213, TNRC6C, PYCR1, PCYT2, RAC3, RFNG, SLC25A19, MRPL12, UBE2O, SEC14L1, SECTM1, DUS1L, SRSF2, SMIM5, SGSH, ENGASE, MRPL38, SNHG20, SUMO2, SRP68, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 SCARNA16, SNORD1A, SNORD1B, SNORD1C, MIR636, TIMP2, TK1, ACTG1, MIR657, PRCD, ASPSCR1, CARD14, MFSD11, ARMC7, CHMP6, RHBDF2, OGFOD3, NUP85, MYO15B, FAAP100, TSPAN10, QRICH2, CBX2, FBF1, CBX4, UNK, DNAH17, GALR2, SPHK1, SOCS3, TRIM47, SLC16A5, SLC16A3, SYNGR2, HGS, CD7, MAFG-AS1, CYTH1, OTOP2, SLC9A3R1, RECQL5, PGS1, AATK, TMEM94, EIF4A3) 0.120544954035596 261 0.106550705783846 1.11272951059277 12502 0.352695465645274 3 3 0 -6.77053246299171 LTS-041 NA NA NA NA LTS-041 chr17 80363379 80363385 7 * OGFOD3 NA 0 NA 1.179 1 NA NA NA NA NA LTS-041 chr17 80363386 80386556 23171 * c(HEXDC, OGFOD3) 0.297251144834695 2 0.223445742854949 2.12912335629458 39 0.96001914693569 11 8 3 -6.73558564225513 LTS-041 chr17 80386557 80391534 4978 * HEXDC NA 0 NA 1.057 1 NA NA NA NA NA LTS-041 chr17 80391535 81050982 659448 * c(RAB40B, B3GNTL1, NARF, HEXDC, METRNL, FOXK2, WDR45B, FN3K, TBCD, C17orf62, FN3KRP, ZNF750) 0.217308999977124 14 0.0728927030219497 1.11187613648937 868 0.264502213405204 2 2 0 -7.21155269491203 LTS-041 chr17 81050983 81083625 32643 * METRNL NA 0 NA 1.18705233224781 13 0.246990163823665 3 NA NA -5.76607547692129 LTS-041 chr18 116845 166819 49975 * c(ROCK1P1, USP14) 0.466 1 NA 1.09589663556593 61 0.255900818603123 3 3 0 -5.76443847952985 LTS-041 chr18 166820 2577851 2411032 * c(NDC80, CETN1, ADCYAP1, CLUL1, TYMSOS, ENOSF1, LINC00470, METTL4, TYMS, YES1, COLEC12, USP14, THOC1) 0.331452771598884 13 0.142805722430771 1.07571390231112 766 0.304424509500031 3 2 1 -6.77819731995372 LTS-041 chr18 2577852 2577920 69 * NDC80 NA 0 NA 1.097 1 NA NA NA NA NA LTS-041 chr18 2577921 14866503 12288583 * c(LINC01387, LOC100192426, LDLRAD4-AS1, MIR4317, MIR3156-2, MIR4526, MIR3976, MIR5190, DLGAP1-AS4, MYL12B, NDC80, MYL12A, PRELID3A, RALBP1, AFG3L2, RAB31, CIDEA, FAM210A, APCDD1, LINC00526, ZNF519, RAB12, DLGAP1-AS3, EPB41L3, ANKRD12, MTCL1, SMCHD1, GNAL, DLGAP1-AS5, LAMA1, CYP4F35P, LINC00667, LRRC30, ANKRD62, IMPA2, ANKRD30B, POTEC, LINC00668, MC2R, MC5R, CXADRP3, ANKRD20A5P, NDUFV2, C18orf61, CEP192, SPIRE1, NA NA NA NA NA NA NA NA NA LTS-041 PSMG2, TWSG1, CHMP1B, PTPN2, PTPRM, PIEZO2, AKAIN1, CBX3P2, MIR3976HG, TMEM200C, DLGAP1-AS1, MPPE1, TGIF1, LOC727896, LDLRAD4, ZBTB14, ARHGAP28, CEP76, SEH1L, EMILIN2, TXNDC2, TUBB6, RNMT, MYOM1, NAPG, L3MBTL4, VAPA, DLGAP1, LPIN2, PPP4R1) 0.353831835530937 139 0.112200855652599 1.18202938731164 5806 0.924361678596547 3 2 1 -6.77910546718726 LTS-041 NA NA NA NA LTS-041 chr18 14866504 15006193 139690 * character(0) NA 0 NA 1.24669968922388 33 0.571365083560521 4 NA NA -5.76655131596115 LTS-041 chr18 18529727 18529837 111 * ROCK1 0.379 1 NA 0.834379063350577 3 0.31485393438863 2 2 0 -5.76441020778978 LTS-041 chr18 18529838 19120732 590895 * c(ESCO1, ROCK1, GREB1L) 0.238208176089606 5 0.226664289203218 0.991954512324777 408 0.294229721330701 2 2 0 -6.86463820564727 LTS-041 chr18 19120733 19140783 20051 * ESCO1 NA 0 NA 0.58 1 NA NA NA NA NA LTS-041 chr18 19140784 22059863 2919080 * c(GATA6-AS1, MIR320C1, MIR320C2, MIR4741, ESCO1, OSBPL1A, TTC39C, ANKRD29, ABHD3, CABYR, GATA6, C18orf8, LAMA3, MIR1-2, MIR133A1, NPC1, IMPACT, MIB1, RBBP8, HRH4, CTAGE1, SNRPD1, TMEM241, RIOK3, CABLES1) 0.297453024557287 13 0.15467198543021 0.748146729057532 2149 0.220613156825123 2 1 1 -7.42958792796178 LTS-041 chr18 22642584 48723426 26080843 * c(CDH2, ZSCAN30, SNORD58C, MIR302F, MIR1539, MIR4319, MIR4318, MIR4320, TCEB3CL2, RPL17-C18orf32, MIR3975, MIR4743, MIR4744, DSG2-AS1, MIR5583-2, MIR5583-1, ACAA2, ZNF271P, MAPRE2, HAUS1, LOXHD1, INO80C, PSMA8, C18orf25, SLC25A52, DSG4, AQP4-AS1, TCEB3C, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DTNA, ZBTB7C, SKA1, CFAP53, TRAPPC8, ZNF396, SLC39A6, GALNT1, ZNF521, TPGS2, SETBP1, SNORD58B, SNORD58A, KCTD1, LINC00907, NA NA NA NA NA NA NA NA NA LTS-041 SIGLEC15, ST8SIA5, CXXC1, AQP4, CCDC178, MIR187, SMAD2, SMAD4, SMAD7, MBD1, ME2, MEP1B, WBP11P1, MYO5B, RNF165, C18orf32, ATP5A1, IER3IP1, TCEB3B, MEX3C, RNF138, PIK3C3, DYM, RNF125, MOCOS, RPRD1A, ELP2, ELAC1, MAPK4, CELF4, KIAA1328, KLHL14, EPG5, RIT2, RPL17, KC6, GAREM1, MIR924HG, SKOR2, SLC14A1, SS18, SCARNA17, SYT4, TAF4B, TTR, PCAT18, ZNF24, FHOD3, ASXL3, SLC14A2, KATNAL2, CHST9, C18orf21, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MRO, HDHD2, ZNF397, NOL4, PSTPIP2, PIAS2, B4GALT6, LIPG, CTIF) 0.281463766534752 167 0.129757560308099 1.02672278819586 8972 0.317991221435695 3 2 1 -7.70547587633268 LTS-041 NA NA NA NA LTS-041 chr18 48723427 48723439 13 * MEX3C NA 0 NA 0.133 1 NA NA NA NA NA LTS-041 chr18 48723440 77809381 29085942 * c(LOC100131655, LINC01630, CDH7, LINC01539, LOC100505549, LINC01541, LOC100505817, RBFADN, MIR4529, MIR3591, MIR5011, LINC-ROR, LINC01544, TSHZ1, CD226, MALT1, TXNL4A, POLI, ALPK2, FAM69C, STARD6, CCBE1, CBLN2, CYB5A, C18orf54, DCC, FBXO15, DOK6, RNF152, LINC00305, FECH, PHLPP1, NEDD4L, WDR7, PIGN, KDSR, GALR1, RTTN, KCNG2, SALL3, CDH20, DYNAP, BOD1L2, ZADH2, SMIM21, LINC00908, HMSD, LOC284294, CDH19, NA NA NA NA NA NA NA NA NA LTS-041 TIMM21, GRP, RAX, LOC339298, CPLX4, ATP9B, OACYLP, LMAN1, LINC01538, LOC400655, LINC00909, C18orf65, MIR122, MBP, MC4R, HSBP1L1, NARS, NFATC1, SERPINB2, ST8SIA3, MEX3C, ATP8B1, SERPINB5, SERPINB8, SERPINB10, SERPINB13, PMAIP1, TMX3, ZCCHC2, ZNF532, ZNF407, CNDP2, KIAA1468, RAB27B, BCL2, SERPINB3, SERPINB4, LOC643542, C18orf63, SNORA37, TCF4, ZNF236, CCDC102B, RBFA, PQLC1, CCDC68, NETO1, CNDP1, SERPINB7, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 TNFRSF11A, MBD2, SERPINB12, SERPINB11, SEC11C, CTDP1, DSEL, SOCS6, TXNL1, ONECUT2, VPS4B, ZNF516) 0.352543923728919 173 0.145121023424277 0.736766129770502 8901 0.329037472774539 2 1 1 -8.82575370677056 LTS-041 NA NA NA NA LTS-041 chr18 77809382 78005362 195981 * c(PARD6G-AS1, RBFADN, ADNP2, RBFA, PARD6G) NA 0 NA 0.743960264457037 238 0.180336003255408 2 NA NA -5.82054182533018 LTS-041 chr19 107416 282753 175338 * c(LINC01002, OR4F17, PLPP2) 0.389 1 NA 0.688468426404164 17 0.0889066347686288 1 1 0 -6.11977904957749 LTS-041 chr19 282754 1090026 807273 * c(MED16, MIR3187, MIR4745, FSTL3, ABCA7, GRIN3B, MISP, CNN2, C2CD4C, CFD, ARID3A, ELANE, ARHGAP45, SHC2, FGF22, ODF3L2, GZMM, PRSS57, PALM, THEG, POLR2E, POLRMT, MIER2, RNF126, PRTN3, AZU1, PTBP1, WDR18, HCN2, BSG, PLPPR3, MADCAM1, KISS1R, PLPP2, R3HDM4, TMEM259, TPGS1, CDC34) 0.356620553742171 55 0.120022901855008 0.625515149242081 1865 0.175199511631927 1 1 0 -7.07599184306324 LTS-041 chr19 1090027 1274461 184435 * c(CIRBP, CIRBP-AS1, SBNO2, CBARP, GPX4, ATP5D, POLR2E, STK11, MIDN) 0.351927368915464 14 0.105008032136531 0.723116640393336 417 0.208346059554119 2 1 1 -6.88403672481928 LTS-041 chr19 1274462 1275344 883 * character(0) NA 0 NA 0.508 1 NA NA NA NA NA LTS-041 chr19 1275345 6465691 5190347 * c(LOC100128568, C19orf71, DPP9-AS1, LOC100288123, MIR1909, MIR1227, CHAF1A, MIR4321, MIR3940, MIR4747, MIR4746, EBI3, PLIN3, APC2, HMG20B, SEMA6B, UQCR11, IZUMO4, SCAMP4, ADAT3, ZNF554, MRPL54, LRG1, ACER1, C19orf70, TMIGD2, TNFAIP8L1, ZNF57, JSRP1, MOB3A, MFSD12, GIPC3, NDUFA11, PLK5, CSNK1G2, TICAM1, ZNRF4, C19orf25, ATP8B3, DIRAS1, ZNF555, DAPK3, PRR22, AES, ANKRD24, EEF2, EFNA2, KDM4B, ZFR2, PIP5K1C, NA NA NA NA NA NA NA NA NA LTS-041 FUT3, FUT5, FUT6, CSNK1G2-AS1, TINCR, CATSPERD, RPL36, GAMT, TIMM13, DAZAP1, AMH, SNORD37, TJP3, NMRK2, GNA11, GNA15, GNG7, SMIM24, MIR7-3HG, SLC25A41, MKNK2, UHRF1, GTF2F1, SLC39A3, ADAMTSL5, TMPRSS9, NDUFS7, C19orf35, HSD11B1L, ONECUT3, MEX3D, VMAC, CACTIN-AS1, MIR7-3, MATK, MLLT1, PLIN5, GADD45B, NFIC, NRTN, OAZ1, ZBTB7A, FZR1, SIRT6, PIAS4, LSM7, MBD3, PCSK4, C19orf24, PLEKHJ1, FEM1A, STAP2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 BTBD2, CCDC94, MYDGF, MAP2K2, PSPN, NCLN, SPPL2B, DUS3L, SHD, REXO1, PTPRS, ZNF77, CACTIN, RFX2, CELF5, RPS15, SAFB, SGTA, LINGO3, ARRDC5, SH3GL1, TBXA2R, TCF3, MIR637, THOP1, TLE2, PLIN4, SLC25A23, FSD1, TLE6, ZNF556, UBXN6, ACSBG2, SF3A2, CLPP, ABHD17A, CAPS, DOHH, KLF16, ALKBH7, DOT1L, CREB3L3, HDGFRP2, LMNB2, RAX2, MUM1, MPND, RANBP3, ATCAY, KHSRP, S1PR4, AP3D1, DPP9, CRB3, REEP6, LONP1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 APBA3, SAFB2) 0.339348271167781 242 0.105437230868911 0.612298042048928 8742 0.230439672875518 1 1 0 -7.09368272725187 LTS-041 NA NA NA NA LTS-041 chr19 6465692 6466423 732 * CRB3 NA 0 NA 0.478 1 NA NA NA NA NA LTS-041 chr19 6466424 6696435 230012 * c(TUBB4A, C3, DENND1C, TNFSF14, TNFSF9, CRB3, CD70) 0.352868341206807 12 0.128604720918107 0.518662849116798 305 0.263474654556402 1 1 0 -6.96788994174222 LTS-041 chr19 6696436 6696496 61 * C3 0.363 1 NA 1.251 1 NA NA NA NA NA LTS-041 chr19 6696497 6820889 124393 * c(SH2D3A, GPR108, C3, VAV1, TRIP10) 0.290385016732587 16 0.125590986274228 0.615214184476703 332 0.227516055037329 1 1 0 -6.74574888970441 LTS-041 chr19 6820890 7012051 191162 * c(ADGRE1, ADGRE4P, FLJ25758, VAV1) 0.264724601079687 8 0.225555188051933 0.502165828265942 337 0.226797324862814 1 1 0 -6.78235769881506 LTS-041 chr19 7012052 7019113 7062 * character(0) NA 0 NA 0.784 1 NA NA NA NA NA LTS-041 chr19 7019114 8933442 1914329 * c(LOC100128573, PET100, RAB11B-AS1, TGFBR3L, MIR4999, CLEC4M, TIMM44, PNPLA6, EVI5L, MBD3L2, TRAPPC5, PCP2, ZNF358, ZNF558, ELAVL1, MCEMP1, FCER2, ARHGEF18, KANK3, ACTL9, OR2Z1, MBD3L5, CD209, CLEC4G, INSR, C19orf45, LYPLA2P2, CTXN1, CLEC4GP1, MYO1F, HNRNPM, NDUFA7, ANGPTL4, MARCH2, CD320, MAP2K7, RETN, XAB2, MCOLN1, CAMSAP3, RPS28, CCL25, MBD3L4, MBD3L3, SNAPC2, STXBP2, ZNF557, CERS4, LRRC8E, PRR36, NA NA NA NA NA NA NA NA NA LTS-041 ADAMTS10, PRAM1, ZNF414, FBN3, RAB11B, PEX11G) 0.33254114715485 57 0.117589346396538 0.605205454093356 2970 0.201688248091671 1 1 0 -6.91383291459706 LTS-041 NA NA NA NA LTS-041 chr19 8933443 8953363 19921 * c(ZNF558, MBD3L1) NA 0 NA 0.348 1 NA NA NA NA NA LTS-041 chr19 8953364 9006463 53100 * c(MBD3L1, MUC16) 0.327229845967365 9 0.130939659555249 0.50605501625799 204 0.183589205899331 1 1 0 -6.8429674725208 LTS-041 chr19 9006464 9006657 194 * MUC16 0.235 1 NA 0.728016626345185 7 1.68167720984 2 2 0 -5.76441101761362 LTS-041 chr19 9006658 9084299 77642 * MUC16 0.30025677946916 45 0.135342767248437 0.524748567728544 793 0.494668945078821 1 1 0 -6.75478782835922 LTS-041 chr19 9084300 9086123 1824 * MUC16 0.45 1 NA 0.487987023205117 37 0.158083159398101 1 1 0 -5.7657627925436 LTS-041 chr19 9086124 9204273 118150 * c(OR1M1, MUC16) 0.384406700862013 5 0.0675736635087961 0.448275966985539 135 0.227158515480566 0 0 0 -6.89503802249937 LTS-041 chr19 9204274 10116353 912080 * c(ZNF559-ZNF177, ZNF266, OR7D4, OR7G1, OR1M1, ZNF560, ZNF846, OR7D2, OR7E24, ZNF561-AS1, ZNF699, OR7G2, OR7G3, COL5A3, PIN1, ZNF562, FBXL12, ZNF317, UBL5, ZNF812P, ZNF121, ZNF177, ZNF426, ZNF559, ZNF561, OLFM2) 0.353867162464588 13 0.0971027079819914 0.574427546482459 1196 0.272614336243618 1 1 0 -7.10006452594448 LTS-041 chr19 10116354 10116375 22 * COL5A3 0.327 1 NA 0.205 1 NA NA NA NA NA LTS-041 chr19 10116376 10132391 16016 * c(COL5A3, RDH8) 0.398 1 NA 0.385599494830626 50 0.140201656515877 0 0 0 -5.78113297076001 LTS-041 chr19 10132392 10148943 16552 * RDH8 NA 0 NA 0.705 1 NA NA NA NA NA LTS-041 chr19 10148944 10541756 392813 * c(SNORD105B, ZGLP1, MIR1181, MIR4322, CDC37, FDX1L, RAVER1, DNMT1, ICAM1, ICAM3, ICAM4, C3P1, P2RY11, MRPL4, PDE4A, C19orf66, PPAN, SNORD105, PPAN-P2RY11, ICAM5, TYK2, ANGPTL6, EIF3G, S1PR2) 0.38555886627423 23 0.0782524545322139 0.593334556043537 1168 0.171707517730973 2 1 1 -7.59220387221164 LTS-041 chr19 10541757 11541685 999929 * c(MIR1238, AP1M2, MIR4748, CDKN2D, CARM1, TMED1, CCDC151, SWSAP1, CCDC159, ILF3-AS1, SPC24, DNM2, EPOR, C19orf38, KANK2, TSPAN16, ILF3, TMEM205, LDLR, MIR199A1, PDE4A, S1PR5, ANGPTL8, RGL3, SLC44A2, DOCK6, PLPPR2, KRI1, SMARCA4, MIR638, YIPF2, QTRT1, ATG4D, C19orf52, RAB3D, KEAP1) 0.388167156624973 58 0.11314116077959 0.8804290352034 2146 0.220031427284482 2 1 1 -6.75731644751585 LTS-041 chr19 11541686 11558316 16631 * c(CCDC151, PRKCSH) NA 0 NA 0.918742717709446 65 0.148611228093252 2 NA NA -5.76773711283422 LTS-041 chr19 11558317 11558372 56 * PRKCSH NA 0 NA 1.015 1 NA NA NA NA NA LTS-041 chr19 11558373 11687351 128979 * c(ZNF653, CNN1, ELAVL3, ECSIT, ACP5, PRKCSH, ELOF1) 0.405 1 NA 1.12472379887288 227 0.206520419893503 3 3 0 -5.7650042825725 LTS-041 chr19 11687352 15734008 4046657 * c(MIR1470, LOC100507373, ZNF625-ZNF20, DDX39A, ZNF443, AKAP8, RNASEH2A, KLF1, GIPC1, ILVBL, CYP4F8, NACC1, MISP3, PGLYRP2, RLN3, ZNF441, ZNF491, ZNF440, OR1I1, CCDC105, CYP4F22, ZNF563, ZNF791, ZNF564, ZNF709, ZNF433, DHPS, DNASE2, ZNF627, DAND5, FARSA, ADGRL1, MAST1, BRD4, CASP14, SYCE2, OR7A17, GCDH, OR7C2, OR7A5, OR7C1, SNORD41, AKAP8L, ZNF763, ZNF844, LOC284454, C19orf53, HOOK2, TNPO2, ADGRE2, NA NA NA NA NA NA NA NA NA LTS-041 DNAJB1, NANOS3, PALM3, JUNB, ZNF788, CLEC17A, OR7A10, ZNF833P, LYL1, MIR181C, MAN2B1, ASNA1, NDUFB7, NFIX, NOTCH3, WDR83OS, ZNF44, ACP5, BEST2, CC2D1A, ZNF823, TRMT1, PRKACA, ASF1B, PKN1, PTGER1, MIR181D, ZNF490, WIZ, RAD23A, RFX1, C19orf67, RASAL3, SLC1A6, ZSWIM4, MIR639, PRDX2, ZNF878, ZNF20, ZNF69, ZNF136, CACNA1A, C19orf43, C19orf57, EPHX3, PODNL1, ZNF442, CALR, CCDC130, RTBDN, MRI1, FBXW9, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 WDR83, ZNF333, ADGRE3, SYDE1, STX10, SAMD1, DCAF15, GADD45GIP1, ZNF799, ZNF625, ZNF700, ZNF439, IL27RA, TECR, IER2, ADGRE5) 0.355065282347857 77 0.157044556807826 1.08677279594899 6702 0.372891602514407 3 2 1 -6.74036235168913 LTS-041 NA NA NA NA LTS-041 chr19 15734009 16620925 886917 * c(KLF2, CYP4F8, CIB3, CALR3, LINC00661, OR10H4, LINC00905, FAM32A, OR10H3, OR10H2, OR10H1, OR10H5, CYP4F24P, CYP4F3, RAB8A, CYP4F11, EPS15L1, UCA1, CYP4F12, TPM4, C19orf44, HSH2D, CYP4F2, AP1M1, MED26) 0.36312964485943 14 0.125808877375063 0.923301402607441 888 0.341148475969611 2 1 1 -6.80465342335757 LTS-041 chr19 16620926 16623806 2881 * c(C19orf44, MED26) NA 0 NA 1.107 1 NA NA NA NA NA LTS-041 chr19 16623807 18854987 2231181 * c(TMEM221, MIR3188, MIR3189, B3GNT3, IFI30, CHERP, CCDC124, NXNL1, LRRC25, ANKLE1, SSBP4, FAM129C, NR2F6, UNC13A, MAST3, FCHO1, SIN3B, CRTC1, FKBP8, TMEM59L, PGLS, LSM4, SNORA68, ARRDC2, CPAMD8, NWD1, BABAM1, IL12RB1, INSL3, JAK3, JUND, SLC27A1, KCNN1, MYO9B, PDE4C, ISYNA1, PIK3R2, PGPEP1, C19orf60, MAP1S, KLHL26, USE1, ANO8, RAB3A, RPL18A, MRPL34, SLC5A5, BST2, LOC729966, UBA52, DDA1, KXD1, TMEM38A, NA NA NA NA NA NA NA NA NA LTS-041 SMIM7, ABHD8, OCEL1, COLGALT1, SLC35E1, KIAA1683, ELL, PLVAP, USHBP1, C19orf44, GTPBP3, MPV17L2, F2RL3, CRLF1, HAUS8, MVB12A, MED26, GDF15) 0.373811402230602 142 0.129209635697371 1.09566901034124 4455 0.411415909393802 3 2 1 -6.73592339153481 LTS-041 NA NA NA NA LTS-041 chr19 18854988 18856659 1672 * CRTC1 NA 0 NA 1.526 1 NA NA NA NA NA LTS-041 chr19 18856660 24116274 5259615 * c(ZNF730, ZNF737, MEF2B, ZNF729, MIR1270, SUGP2, CERS1, COPE, ZNF257, NR2C2AP, COMP, NCAN, CILP2, ZNF98, ZNF738, ZNF714, ZNF681, ZNF676, ZNF100, ZNF431, ZNF675, ZNF626, CRTC1, MAU2, GDF1, SLC25A42, LINC00663, ZNF493, ZNF429, YJEFN3, ZNF728, RPSAP58, LINC00664, HAPLN4, BORCS8-MEF2B, ZNF506, GOLGA2P9, ZNF724, NDUFA13, GMIP, TM6SF2, DDX49, GATAD2A, TMEM161A, ZNF253, ATP13A1, ZNF492, SUGP1, UPF1, LOC641367, NA NA NA NA NA NA NA NA NA LTS-041 ZNF826P, BORCS8, ZNF726, ZNF14, ZNF708, ZNF43, ZNF85, ZNF90, ZNF91, ZNF99, ZNF208, ZNF430, PBX4, ZNF93, TSSK6, RFXANK, ZNF486, ZNF682, LPAR2, ARMC6, ZNF101, HOMER3) 0.354182544862285 49 0.117768270965734 1.388083638274 3543 0.375874361542312 4 2 2 -6.80407862118838 LTS-041 NA NA NA NA LTS-041 chr19 24116275 24345121 228847 * c(HAVCR1P1, ZNF726, ZNF254) NA 0 NA 1.27706085079652 75 0.36411978624999 4 NA NA -5.76909418008293 LTS-041 chr19 28247625 30021022 1773398 * c(LINC01532, LINC00906, LINC00662, LOC284395, VSTM2B, UQCRFS1) 0 1 NA 1.69486249612442 47 0.467053852968389 5 5 0 -5.77246658574884 LTS-041 chr19 30021023 31767321 1746299 * c(POP4, VSTM2B, TSHZ3, PLEKHF1, C19orf12, URI1, CCNE1, NA, ZNF536) 0.235018344299232 7 0.0400582908605281 1.63731900344217 402 0.383283812937016 6 5 1 -6.91563400736104 LTS-041 chr19 31767322 35036298 3268977 * c(THEG5, UBA2, CEBPA, CEBPG, SLC7A9, WDR88, WTIP, DPY19L3, ZNF507, LSM14A, GPI, RGS9BP, NUDT19, LOC400684, LRP3, PEPD, GPATCH1, SLC7A10, TSHZ3, CHST8, KCTD15, CEBPA-AS1, ANKRD27, PDCD2L, CEP89, RHPN2, PDCD5, FAAP24, TDRD12, KIAA0355) 0.276392403916166 63 0.105555434823549 1.44115178586856 1903 0.505345823496628 4 3 1 -6.80512251853307 LTS-041 chr19 35036299 35084412 48114 * c(SCGB2B2, SCGB1B2P) NA 0 NA 0.978 1 NA NA NA NA NA LTS-041 chr19 35084413 35851141 766729 * c(HPN-AS1, SCGB2B3P, LINC00904, MIR5196, ZNF792, ZNF599, FAM187B, LGI4, SCGB2B2, FFAR1, FFAR3, HPN, ZNF181, LOC400685, MAG, LSR, FXYD1, FXYD3, FXYD7, FXYD5, ZNF302, GRAMD1A, HAMP, SCN1B, USF2, ZNF30, CD22) 0.279500166555985 31 0.14918475231263 1.28270542554946 1174 0.665495535201962 4 3 1 -6.75748571137332 LTS-041 chr19 35851142 35863609 12468 * FFAR3 NA 0 NA 0.534949243010131 39 0.558707695310276 1 NA NA -5.76457894598522 LTS-041 chr19 35863610 35863627 18 * character(0) NA 0 NA 0.92 1 NA NA NA NA NA LTS-041 chr19 35863628 39978799 4115172 * c(LINC01531, LOC100134317, TMEM147-AS1, LINC00665, ZNF571-AS1, MIR4530, LOC100631378, UPK1A-AS1, IFNL4, PAK4, TMEM147, SPINT2, HCST, UPK1A, MAP4K1, FBXO17, TBCB, ARHGAP33, RASGRP4, ZNF573, HSPB6, RINL, FBXO27, COX6B1, COX7A1, ZNF420, ZNF565, FAM98C, CAPN12, PROSER3, ZNF569, ZNF570, ZNF567, ZNF383, ZNF781, SYNE4, ZNF540, ECH1, ZNF585A, GGN, THAP8, U2AF1L4, ETV2, ZFP30, SIRT2, SIPA1L3, HAUS5, ZNF345, CLIP3, NA NA NA NA NA NA NA NA NA LTS-041 GAPDHS, ZBTB32, EIF3K, IFNL2, IFNL3, IFNL1, WDR62, ZFP82, ZNF790-AS1, LOC284412, HKR1, FFAR2, HNRNPL, APLP1, ZNF260, ZNF850, NCCRP1, SYCN, SBSN, ZNF829, ZNF568, KRTDAP, ZNF790, ZNF793, ACP7, LGALS4, LGALS7, SPRED3, NFKBIB, NPHS1, ATP4A, ZNF571, POLR2I, PAF1, SARS2, SAMD4B, MED29, PSENEN, LIN37, PSMD8, LRFN1, ZFP14, ZNF529, CATSPERG, PRODH2, MRPS12, RPS16, RYR1, C19orf33, CCER2, SDHAF1, LOC644189, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 LOC644554, PLEKHG2, LGALS7B, SUPT5H, OVOL3, LOC728752, TYROBP, ZFP36, ZNF146, RBM42, LRFN3, IGFLR1, ACTN4, DPF1, CAPNS1, WDR87, KIRREL2, ZNF527, ZNF607, NFKBID, ZNF382, ZNF566, ALKBH6, YIF1B, ZNF461, ZNF585B, TIMM50, DMKN, KCNK6, PPP1R14A, GMFG, KMT2B) 0.295980386028247 159 0.129528926403552 1.27268064189852 7679 0.406510058083992 4 3 1 -6.8111883984284 LTS-041 NA NA NA NA LTS-041 chr19 39978800 40376832 398033 * c(LOC100129935, DLL3, CLC, EID2B, LGALS16, EID2, FBL, LGALS13, LEUTX, SELENOV, LGALS17A, LGALS14, FCGBP, DYRK1B, TIMM50) 0.264236669001623 14 0.0930634015244269 1.17583837410675 486 0.458618245100757 5 4 1 -6.85190850119155 LTS-041 chr19 40376833 40376849 17 * FCGBP NA 0 NA 0.825 1 NA NA NA NA NA LTS-041 chr19 40376850 40399881 23032 * FCGBP 0.25 1 NA 0.583672433894728 39 0.364804841250401 1 1 0 -5.76441122105546 LTS-041 chr19 40399882 40405934 6053 * FCGBP NA 0 NA 1.374 1 NA NA NA NA NA LTS-041 chr19 40405935 40978640 572706 * c(C19orf47, HIPK4, TTC9B, ZNF780B, AKT2, PLD3, ZNF780A, SERTAD3, SERTAD1, ZNF546, MAP3K10, PSMC4, PRX, SPTBN4, BLVRB, MIR641, CNTD2, FCGBP) 0.318023817811411 9 0.0906197795431243 1.09939099606623 1163 0.269076304701296 3 2 1 -6.89461501059527 LTS-041 chr19 40978641 41008049 29409 * SPTBN4 0.477 1 NA 1.1789701662948 31 0.109838062619476 3 3 0 -5.77062115506402 LTS-041 chr19 41008050 41094736 86687 * c(SPTBN4, SHKBP1) 0.308869913813426 3 0.159575478483799 1.12674149529148 282 0.244347678505888 4 3 1 -6.76522179529744 LTS-041 chr19 41094737 41094992 256 * SHKBP1 NA 0 NA 0.854 1 NA NA NA NA NA LTS-041 chr19 41094993 47153181 6058189 * c(SRRM5, ERICH4, EML2-AS1, LOC100289650, LOC100379224, MIR4323, MIR642B, PCAT19, LOC100505622, LOC100505715, PPP5D1, MIA-RAB4B, RAB4B-EGLN2, APOC4-APOC2, MIR4531, RNU6-66P, LIPE-AS1, TOMM40, CEACAM5, RABAC1, ZNF234, CEACAM3, PPP1R13L, CD3EAP, CEACAM7, CEACAM8, CEACAM4, HNRNPUL1, CLASRP, EGLN2, CKM, ZNF526, CLPTM1, CEACAM20, IRGQ, ZNF428, PPM1N, KLC3, IGSF23, LYPD4, DACT3, SIX5, IGFL2, CYP2A6, CYP2A7, CYP2A13, NA NA NA NA NA NA NA NA NA LTS-041 CYP2B6, CYP2B7P, CYP2F1, ZNF296, DEDD2, DMPK, DMWD, MEGF8, CADM4, ERCC1, ERCC2, ERF, CYP2G1P, CIC, FBXO46, ETHE1, FOSB, PRG1, CBLC, EML2, IRF2BP1, GIPR, ZNF285, LYPD3, GPR4, C19orf54, PRR19, TMEM145, CXCL17, LOC284344, ZNF575, LYPD5, ZNF283, PPP1R37, NKPD1, GRIK5, GSK3A, CYP2S1, FOXA3, MYPOP, NANOS2, APOC1, APOC1P1, ZNF404, ZNF284, APOC2, APOE, ZNF233, B3GNT8, IGFL1, KCNN4, CEACAM22P, CEACAM16, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 BLOC1S3, BHMG1, IGFL3, PINLYP, LIPE, BCAM, PSG8, MIR330, IGFL4, CEACAM6, ATP1A3, NOVA2, PAFAH1B3, PLAUR, RAB4B, POU2F2, QPCTL, ATP5SL, PNMAL1, PPP5C, AXL, SMG9, IRGC, PSG1, PSG2, PSG3, PSG4, PSG5, PSG6, PSG7, PSG9, PSG11, EXOSC5, CEACAM19, CD177, PTGIR, PNMAL2, MARK4, PVR, NECTIN2, BCKDHA, RELB, BCL3, RPS19, RTN2, CEACAM1, DMRTC2, TMEM91, HIF3A, ZNF574, PSG10P, PHLDB3, SNRPA, SNRPD2, MIR642A, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 TGFB1, CCDC61, VASP, XRCC1, ZNF45, ZNF221, ZNF222, MIR769, ZNF155, ZNF180, ZNF223, ZNF224, ZNF225, ZNF226, ZNF227, ZNF112, ZNF229, ZNF230, TRAPPC6A, ZNF576, GEMIN7, COQ8B, OPA3, ITPKC, B9D2, CALM3, RSPH6A, SYMPK, MIA, TEX101, CCDC8, LTBP4, CNFN, PGLYRP1, CEACAM21, CCDC97, EXOC3L2, ARHGEF1, NUMBL, SHKBP1, ZNF235, LOC93429, GNG8, CD79A) 0.36059159501974 192 0.121732099626215 0.852789358808551 9341 0.271840182858728 2 1 1 -6.78220146731205 LTS-041 NA NA NA NA LTS-041 chr19 47153182 47153708 527 * DACT3 NA 0 NA 1.138 1 NA NA NA NA NA LTS-041 chr19 47153709 49116556 1962848 * c(SNAR-A1, SNAR-A12, BSPH1, SNAR-C2, SNAR-C4, SNAR-E, SNAR-C3, MIR3191, MIR3190, MIR320E, NAPA-AS1, CARD8-AS1, DACT3-AS1, SAE1, KDELR1, KPTN, LMTK3, AP2S1, CRX, DACT3, ZNF114, SPACA4, EMP3, CARD8, ZC3H4, SYNGR4, INAFM1, PRKD2, CCDC9, BBC3, C5AR2, TPRX1, GRIN2D, ARHGAP35, STRN4, GLTSCR2, GLTSCR1, EHD2, KCNJ14, LIG1, NPAS1, FAM83E, TMEM160, TMEM143, CABP5, MEIS3, ELSPBP1, SELENOW, SLC1A5, SLC8A2, SULT2B1, NA NA NA NA NA NA NA NA NA LTS-041 SULT2A1, SNORD23, C5AR1, FKRP, GRWD1, ZNF541, PLA2G4C, NAPA, CYTH2, CCDC114, DHX34) 0.341929588809021 51 0.138546250506507 0.971901410104139 3045 0.482552636695883 3 2 1 -6.83227093527873 LTS-041 NA NA NA NA LTS-041 chr19 49116557 50726570 1610014 * c(SNAR-G1, SNAR-B2, SNAR-D, SNAR-G2, MIR4324, PTOV1-AS1, GFY, MIR4749, MIR4750, MIR4751, MIR5088, LOC101059948, CGB3, RUVBL2, PNKP, PTH2, SIGLEC11, CGB1, CGB2, IZUMO2, CPT1C, ALDH16A1, NTN5, CCDC155, AP2A1, DBP, ADM5, FCGRT, ATF5, FLT3LG, RPL13A, NUP62, PPP1R15A, FTL, FUT1, FUT2, ZNF473, IL4I1, FGF21, SNORD35A, SNORD34, SNORD33, SNORD32A, DKKL1, DHDH, MAMSTR, IZUMO1, SLC6A16, GYS1, HRC, PRMT1, IRF3, NA NA NA NA NA NA NA NA NA LTS-041 KCNA7, LHB, SIGLEC16, LOC400710, MIR150, NTF4, NUCB1, NOSIP, HSD17B14, VRK3, PTOV1, TRPM4, FAM83E, RASIP1, PIH1D1, C19orf73, PRRG2, SPHK2, SLC17A7, RCN3, PRR12, PLEKHA4, BAX, SCAF1, BCAT2, TSKS, RPL18, RPS11, RRAS, LIN7B, SEC1P, SNRNP70, TULP2, CA11, TBC1D17, MYH14, FUZ, MED25, BCL2L12, AKT1S1, SNORD35B, TEAD2, PPFIA3, CGB5, CGB7, CGB8, CD37) 0.380982746371123 93 0.109731277442586 1.02579852689029 4204 0.384498288005198 3 2 1 -6.78022309263059 LTS-041 NA NA NA NA LTS-041 chr19 50726571 50727510 940 * MYH14 0.435 1 NA 1.24258561660494 5 0.362232660040477 4 4 0 -5.76444859723656 LTS-041 chr19 50727511 51128455 400945 * c(SNAR-F, FAM71E1, JOSD2, NAPSB, EMC10, KCNC3, MYBPC2, POLD1, ASPDH, SPIB, NR1H2, MYH14, SYT3, LRRC4B, NAPSA) 0.23903729254371 14 0.211743118782284 1.01668449384813 848 0.424070213953185 2 2 0 -6.8095891780163 LTS-041 chr19 51128456 52133720 1005265 * c(LOC100129083, KLK11, KLK8, CLDND2, VSIG10L, C19orf84, ETFB, KLK5, KLK13, SIGLEC7, SIGLEC9, SIGLEC8, MGC45922, KLK9, SIGLEC17P, SIGLECL1, GPR32, C19orf81, KLK3, KLK1, KLK2, LIM2, IGLON5, KLK14, KLK12, NKG7, SHANK1, KLK15, KLK7, KLK6, KLK10, KLKP1, CLEC11A, SNORD88A, SNORD88B, SNORD88C, CEACAM18, LINC01530, ZNF175, SYT3, C19orf48, SIGLEC5, SIGLEC10, SIGLEC12, CTU1, ACPT, CD33, SIGLEC6, KLK4) 0.346431778894454 48 0.116832212841522 0.938833661602847 1895 0.386598095882437 3 2 1 -6.85405408519404 LTS-041 chr19 52133721 52146302 12582 * c(SIGLEC14, SIGLEC5) NA 0 NA 1.799 1 NA NA NA NA NA LTS-041 chr19 52146303 52196631 50329 * c(SIGLEC14, SPACA6, MIRLET7E, MIR125A, MIR99B) 0.376341930404828 2 0.118086832458153 1.57407483267997 39 0.665548387324652 5 3 2 -6.73621237225344 LTS-041 chr19 52196632 52196824 193 * SPACA6 NA 0 NA 1.058 1 NA NA NA NA NA LTS-041 chr19 52196825 54075063 1878239 * c(ERVV-2, ZNF816-ZNF321P, BIRC8, ZNF816, ZNF813, SPACA6, ZNF480, ZNF534, ZNF578, ERVV-1, TPM3P9, ZNF836, ZNF610, ZNF600, ZNF320, ZNF525, FPR1, FPR2, FPR3, ZNF615, ZNF841, HAS1, VN1R2, VN1R4, ZNF677, ZNF808, ZNF761, ZNF818P, ZNF321P, ZNF880, PPP2R1A, ZNF331, ZNF701, ZNF83, ZNF415, ZNF350, FAM90A27P, ZNF649, MIR643, ZNF28, ZNF137P, ZNF665, ZNF613, ZNF702P, ZNF614, ZNF611, ZNF528, ZNF347, ZNF577, ZNF616, NA NA NA NA NA NA NA NA NA LTS-041 ZNF766, ZNF468, ZNF160, ZNF765, ZNF845, ZNF432) 0.375050148327464 97 0.0990996734349518 0.984565712632254 2570 0.317516270742124 3 2 1 -6.88268715225189 LTS-041 NA NA NA NA LTS-041 chr19 54075064 54079944 4881 * ZNF331 NA 0 NA 0.778 1 NA NA NA NA NA LTS-041 chr19 54079945 54610757 530813 * c(MIR935, MIR1283-2, MIR1323, MIR1283-1, MIR371B, OSCAR, LOC284379, VSTM1, TFPT, TARM1, MIR372, MIR373, NDUFA3, DPRX, ZNF331, PRKCG, MIR512-2, MIR498, MIR520E, MIR515-1, MIR519E, MIR520F, MIR519C, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, NA NA NA NA NA NA NA NA NA LTS-041 MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR516A2, MIR519A2, CACNG8, CACNG7, CACNG6, NLRP12, MYADM) 0.303015388581306 21 0.196889175982449 0.902466128731814 972 0.460918880307378 3 2 1 -6.85378688031229 LTS-041 NA NA NA NA LTS-041 chr19 54610758 54610819 62 * TFPT NA 0 NA 1.135 1 NA NA NA NA NA LTS-041 chr19 54610820 54800203 189384 * c(MIR4752, LILRB2, LILRB5, LILRB3, LILRA3, TMC4, PRPF31, TFPT, CNOT3, RPS9, TSEN34, MBOAT7, LENG1, LILRA6) 0.314990706538135 40 0.12511938913878 1.0021960535392 812 0.405055530967181 4 3 1 -6.80114131128529 LTS-041 chr19 54800204 54818321 18118 * c(LILRA3, LILRA6) NA 0 NA 0.34538924106419 39 0.375162210531027 0 NA NA -5.76484554434246 LTS-041 chr19 54818322 54818411 90 * LILRA5 NA 0 NA 0.941 1 NA NA NA NA NA LTS-041 chr19 54818412 55327957 509546 * c(LILRB1, LILRB4, LILRA1, LILRA2, LENG8, KIR3DL3, CDC42EP5, LILRA4, LILRA5, KIR2DL1, KIR2DL3, KIR2DS4, KIR3DL1, LAIR1, LAIR2, TTYH1, LILRP2, KIR3DX1, LENG9) 0.30872480686299 68 0.11883656356984 0.940106570939217 1025 0.705401000589738 4 3 1 -6.81770879183652 LTS-041 chr19 55327958 55327960 3 * c(KIR2DS4, KIR3DL1) 0.377 1 NA 1.585 1 NA NA NA NA NA LTS-041 chr19 55327961 55358686 30726 * c(KIR2DS4, KIR3DL1) 0.345956697365029 13 0.0860674303328649 1.49762628641806 67 0.773692784703182 6 4 2 -6.73739909811605 LTS-041 chr19 55358687 55358705 19 * c(KIR2DS4, KIR3DL1) NA 0 NA 0.647 1 NA NA NA NA NA LTS-041 chr19 55358706 55512302 153597 * c(RNU6-64P, NLRP7, FCAR, KIR2DS4, KIR3DL1, KIR3DL2, NLRP2, NCR1) 0.285143377437601 28 0.166634155559242 0.891346814162494 339 0.791148036199383 1 1 0 -6.76164709980041 LTS-041 chr19 55512303 55512316 14 * NLRP2 0.399 1 NA 3.885 1 NA NA NA NA NA LTS-041 chr19 55512317 55558922 46606 * c(RDH13, GP6, NLRP2) 0.368354466779109 6 0.082652082046774 0.94685771081231 86 0.362774686342109 3 2 1 -6.73869792145807 LTS-041 chr19 55558923 55574403 15481 * RDH13 0.214 1 NA 0.9025463200955 25 0.21192372841819 2 2 0 -5.76536768846137 LTS-041 chr19 55574404 59074653 3500250 * c(A1BG, MIMT1, ZNF667-AS1, LOC100128398, SBK3, MZF1-AS1, PEG3-AS1, ZNF587B, ZNF865, MIR4754, TRIM28, ZNF256, ZNF211, TRAPPC2B, ZNF274, ZNF460, SLC27A5, RDH13, U2AF2, ZIM3, ZNF837, ZNF543, COX6B2, NLRP13, NLRP8, NLRP5, ZNF787, ZFP28, SMIM17, C19orf18, ZNF418, ZNF417, ZNF548, TMEM190, ZNF524, ZNF784, NLRP4, ZNF542P, ZNF582, ZNF583, ZNF497, ZNF550, ZNF579, ZNF584, ZSCAN4, NLRP11, FKBP1AP1, PPP6R1, ZIM2, NA NA NA NA NA NA NA NA NA LTS-041 HSPBP1, TMEM86B, ZNF549, ZNF324, CHMP2A, ZNF544, UBE2S, SSC5D, ZNF547, ZIK1, ZNF776, ZSCAN1, TMEM150B, FAM71E2, CCDC106, EPN1, NLRP9, RFPL4A, ZSCAN5B, ZSCAN22, ZNF530, DNAAF3, IL11, ZNF773, ZNF582-AS1, TMEM238, ZNF470, ZNF749, ZNF324B, ZNF805, ZNF772, A1BG-AS1, DUXA, ZNF580, ZNF581, PEG3, PPP1R12C, ZNF586, EPS8L1, ZNF444, ZNF416, ZNF446, NAT14, VN1R1, ZNF304, ZNF471, USP29, PTPRH, ZNF71, RPL28, RPS5, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ZNF667, SBK2, RNF225, ZSCAN18, AURKC, SYT5, TNNI3, TNNT1, SHISA7, RFPL4AL1, ZNF814, ZNF8, ZNF17, MZF1, ZNF132, ZNF134, ZNF135, ZNF154, ZSCAN5A, ZNF329, ZNF419, ISOC2, ZNF552, ZNF671, ZNF606, BRSK1, KMT5C, ZBTB45, ZNF587, FIZ1, GALP, ZNF628, ZNF551, UBE2M, ZNF835, ZNF264) 0.355381481785862 209 0.131651480789943 0.981197022694011 6934 0.475899281661568 3 2 1 -6.86400037919332 LTS-041 NA NA NA NA LTS-041 chr19 59074654 59084001 9348 * c(MZF1-AS1, MZF1) NA 0 NA 0.993903349719214 35 0.135341255580791 3 NA NA -5.76781957695348 LTS-041 chr20 68260 138125 69866 * c(DEFB127, DEFB125, DEFB126) 0.416 1 NA 0.830907648524256 37 0.354670934066314 2 2 0 -5.76448165817796 LTS-041 chr20 138126 1559302 1421177 * c(SDCBP2-AS1, FKBP1A-SDCBP2, SIRPB1, RBCK1, SLC52A3, TBC1D20, SIRPD, C20orf96, SRXN1, DEFB127, DEFB129, CSNK2A1, FKBP1A, DEFB128, SDCBP2, SIRPB2, RSPO4, DEFB132, C20orf202, ANGPT4, TMEM74B, NSFL1C, TRIB3, RAD21L1, SOX12, TCF15, NRSN2, FAM110A, ZCCHC3, SCRT2, PSMF1, SNPH) 0.32610501176648 57 0.170538258520039 1.00917576038789 1922 0.491476870362955 3 2 1 -6.79381298052165 LTS-041 chr20 1559303 1569092 9790 * SIRPB1 NA 0 NA 0.082 1 NA NA NA NA NA LTS-041 chr20 1569093 1592348 23256 * SIRPB1 NA 0 NA 0.121371230120584 39 0.0945740789553692 0 NA NA -6.96074733855848 LTS-041 chr20 1592349 1600390 8042 * SIRPB1 NA 0 NA 1.035 1 NA NA NA NA NA LTS-041 chr20 1600391 6195265 4594875 * c(SNORD119, UBOX5-AS1, TMEM239, LOC100289473, MIR1292, MIR103B2, PCNA-AS1, LINC00658, SIRPB1, NOP56, CENPB, CHGB, RNF24, HSPA12B, TMC2, C20orf141, PROKR2, SIRPA, STK35, ADRA1D, PRNT, LINC00654, C20orf196, LRRN4, UBOX5, PRND, SPEF1, C20orf194, GNRH2, TMEM230, IDH3B, TGM6, ITPA, MIR103A2, OXT, PCNA, TRMT6, PDYN, SMOX, CRLS1, C20orf27, AVP, AP5S1, SIRPG, FERMT1, PRNP, GPCPD1, CPXM1, MAVS, EBF4, PTPRA, NA NA NA NA NA NA NA NA NA LTS-041 FASTKD5, GFRA4, LOC643406, VPS16, PCED1A, MRPS26, DDRGK1, SIGLEC1, SNRPB, SNORA51, SNORD110, TGM3, LINC01433, ZNF343, PANK2, ADAM33, SLC4A11, MCM8, ATRN, CDS2, LZTS3, RASSF2, CDC25B, SLC23A2) 0.361986026866018 153 0.111038735156676 1.03500173470137 5240 0.339046728945421 3 2 1 -6.83346094633184 LTS-041 NA NA NA NA LTS-041 chr20 6195266 6196087 822 * character(0) NA 0 NA 1.093 1 NA NA NA NA NA LTS-041 chr20 6196088 18576890 12380803 * c(SNAP25-AS1, PET117, MACROD2-AS1, MIR3192, ISM1-AS1, SEC23B, POLR3F, RBBP9, DSTN, SLX4IP, MACROD2, BANF2, ISM1, JAG1, BTBD3, PLCB1, FLRT3, LAMP5, SNX5, LOC339593, LINC00493, LINC00851, PCSK2, ESF1, PLCB4, HAO1, DZANK1, SPTLC3, KIF16B, TASP1, TMX4, OTOR, PAK5, KAT14, OVOL2, RRBP1, BFSP1, ANKEF1, BMP2, SNAP25, SNRPB2, SNORD17, ZNF133, NDUFAF5, SEL1L2, MKKS, MGME1, DTD1) 0.360643404404825 94 0.133676653622213 1.08018362016214 3889 0.447846488410192 3 2 1 -6.752258001783 LTS-041 chr20 18576891 18608685 31795 * DTD1 NA 0 NA 1.761 1 NA NA NA NA NA LTS-041 chr20 18608686 20033223 1424538 * c(C20orf78, LOC100130264, LOC100270804, SCP2D1, CFAP61, LINC00652, NAA20, CRNKL1, RIN2, SLC24A3, DTD1) 0.403754776162129 4 0.08266145816925 1.40310729296923 465 0.296277927582593 4 2 2 -6.74973490524711 LTS-041 chr20 20033224 20152462 119239 * c(CFAP61, CRNKL1) 0.397 1 NA 1.36828999318217 92 0.453001170197902 4 4 0 -5.76441116836189 LTS-041 chr20 20152463 21696640 1544178 * c(XRN2, CFAP61, INSM1, NKX2-2, PAX1, KIZ, RALGAPA2, NKX2-4) 0.356667822010422 19 0.189582890880532 1.35923821505455 918 0.414522722056136 4 2 2 -6.75540466313667 LTS-041 chr20 22252935 24939710 2686776 * c(CST8, CSTL1, CST9L, CST9, LINC00261, CST11, CST1, CST2, CST3, CST4, CST5, CST13P, LINC00656, CD93, LOC284788, NXT1, FOXA2, FLJ33581, NAPB, GZF1, SSTR4, THBD, SYNDIG1, CST7, GGTLC1) 0.384544683081104 37 0.142128558098037 1.62822619552286 911 0.774248474027026 5 3 2 -6.73303318548053 LTS-041 chr20 24939711 24940149 439 * CST7 NA 0 NA 0.882 1 NA NA NA NA NA LTS-041 chr20 24940150 26188981 1248832 * c(LOC100134868, NANP, NCOR1P1, NINL, ABHD12, ZNF337, LOC284798, FAM182A, MIR663AHG, VSX1, APMAP, PYGB, MIR663A, FAM182B, ACSS1, CST7, ENTPD6, GINS1) 0.364323711649734 79 0.125165510678026 1.41469575289723 1186 0.542439156741679 4 2 2 -6.76801296402443 LTS-041 chr20 26188982 26189020 39 * MIR663AHG NA 0 NA 1.01517367717603 3 0.149533719720113 3 NA NA -5.76441739482003 LTS-041 chr20 29625845 29625876 32 * FRG1BP 0.343 1 NA 1.598 1 NA NA NA NA NA LTS-041 chr20 29625877 30922864 1296988 * c(MCTS2P, MIR3193, HM13-AS1, DEFB118, DUSP15, TSPY26P, MLLT10P1, CCM2L, LINC00028, TTLL9, TPX2, FOXS1, POFUT1, DEFB115, DEFB116, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, FRG1BP, REM1, HCK, ID1, XKR7, PLAGL2, BCL2L1, HM13, PDRG1, COX4I2, MYLK2, KIF3B, TM9SF4) 0.299094311139073 49 0.137003041328772 1.05605439745814 1630 0.42758214147617 3 2 1 -6.88006196169078 LTS-041 chr20 30922865 30946121 23257 * character(0) NA 0 NA 2.479 1 NA NA NA NA NA LTS-041 chr20 30946122 31958317 1012196 * c(BPIFB6, BPIFA3, BPIFA2, NOL4L, SUN5, LOC149950, COMMD7, BPIFB4, ASXL1, DNMT3B, MAPRE1, C20orf203, BPIFA4P, BPIFB3, BPIFA1, CDK5RAP1, BPIFB2, BPIFB1) 0.259324920407674 52 0.128530204911766 1.21747845299877 1519 0.650706789835528 4 3 1 -6.8334733944436 LTS-041 chr20 31958318 31981849 23532 * CDK5RAP1 0.407 1 NA 0.99326326978942 41 0.149834249886414 3 3 0 -5.77149462366801 LTS-041 chr20 31981850 32678474 696625 * c(MIR4755, PXMP4, C20orf144, CHMP4B, ACTL10, E2F1, RALY, CDK5RAP1, NECAB3, SNTA1, ZNF341, EIF2S2, CBFA2T2) 0.356170167027151 10 0.0748646185531664 1.16317623722629 708 0.280858131491172 3 2 1 -6.75682375018779 LTS-041 chr20 32678475 33657190 978716 * c(MIR499B, PIGU, HMGB3P1, AHCY, NCOA6, TRPC4AP, GGT7, GSS, ASIP, ACSS2, MIR499A, MYH7B, TP53INP2, MIR644A, DYNLRB1, ITCH, MAP1LC3A, EIF2S2) 0.350802451857883 22 0.107143873011057 1.07126771041776 1392 0.25929422079755 3 2 1 -6.75273534040584 LTS-041 chr20 33657191 34309872 652682 * c(RBM12, MMP24-AS1, PROCR, MMP24, CEP250, FAM83C, ROMO1, C20orf173, TRPC4AP, EIF6, ERGIC3, UQCC1, EDEM2, SPAG4, GDF5, CPNE1, NFS1, RBM39) 0.375044792515454 22 0.140710080803853 0.895880403011349 1489 0.252244998358624 2 1 1 -6.76559046816487 LTS-041 chr20 34309873 34312526 2654 * RBM39 NA 0 NA 1.449 1 NA NA NA NA NA LTS-041 chr20 34312527 34389607 77081 * c(PHF20, RBM39) 0.367 1 NA 1.44223445237929 78 0.291742017192253 4 4 0 -5.76601499813016 LTS-041 chr20 34389608 34430498 40891 * PHF20 NA 0 NA 0.951 1 NA NA NA NA NA LTS-041 chr20 34430499 35060082 629584 * c(CNBD2, EPB41L1, DLGAP4, AAR2, PHF20, SCAND1, NORAD) 0.472 1 NA 0.905323680219994 590 0.220318626206052 2 2 0 -5.80352076159452 LTS-041 chr20 35060083 35060162 80 * DLGAP4 NA 0 NA 1.103 1 NA NA NA NA NA LTS-041 chr20 35060163 35269843 209681 * c(TGIF2-C20orf24, MYL9, DLGAP4, C20orf24, TGIF2, SLA2) NA 0 NA 1.38647991645884 335 0.310444680702643 4 NA NA -5.76470102993903 LTS-041 chr20 35269844 35280198 10355 * c(NDRG3, SLA2) NA 0 NA 1.097 1 NA NA NA NA NA LTS-041 chr20 35280199 36946848 1666650 * c(LOC100287792, LINC00489, BLCAP, VSTM2L, MROH8, SOGA1, TLDC2, SAMHD1, GHRH, NNAT, CTNNBL1, NDRG3, RPRD1B, RBL1, RPN2, MANBAL, BPI, SRC, TGM2, DSN1, KIAA1755, TTI1) 0.37846318317528 34 0.112464076260813 0.988884641711896 2022 0.262934788981515 3 2 1 -6.91274479057886 LTS-041 chr20 36946849 36965617 18769 * BPI 0.413 1 NA 1.01343241734595 45 0.248736987376001 3 3 0 -5.76575902088248 LTS-041 chr20 36965618 40192867 3227250 * c(SNHG11, SLC32A1, ADIG, ZHX3, PPP1R16B, SNORA71B, SNORA71A, LOC339568, ARHGAP40, SNHG17, LBP, PLCG1, RALGAPB, DHX35, LPIN3, BPI, SNORA71E, SNORA71C, SNORA71D, TOP1, ACTR5, FAM83D, CHD6, EMILIN3, MAFB) 0.358408752193365 35 0.156619498233428 0.982041210603352 2100 0.342790634017232 3 2 1 -6.95384383638441 LTS-041 chr20 40701394 40770670 69277 * PTPRT 0.448814882354978 4 0.0651434314928732 2.03532108511674 246 0.5540966429959 6 3 3 -7.14148070934064 LTS-041 chr20 40770671 40789925 19255 * PTPRT NA 0 NA 1.128 1 NA NA NA NA NA LTS-041 chr20 40789926 42355567 1565642 * c(SGK2, PTPRT, GTSF1L, L3MBTL1, MYBL2, IFT52, SRSF6) 0.335265140674391 8 0.211080891738553 1.55113168487843 640 0.517219136734557 5 3 2 -6.77400970499969 LTS-041 chr20 42355568 43704311 1348744 * c(ADA, MIR3646, OSER1-AS1, STK4-AS1, TOMM34, SERINC3, PKIG, FITM2, RIMS4, R3HDML, GTSF1L, HNF4A, OSER1, JPH2, KCNK15, STK4, YWHAB, GDAP1L1, LINC01260, TTPAL, PABPC1L, TOX2, WISP2) 0.370740517990164 25 0.167051888146568 1.78347435126135 1395 0.667296885621083 6 4 2 -6.74674458631991 LTS-041 chr20 43704312 45214052 1509741 * c(ACOT8, ZNF663P, EPPIN-WFDC6, WFDC2, SPINT3, UBE2C, RBPJL, DNTTIP1, WFDC12, SPATA25, OCSTAMP, WFDC3, NEURL2, ZSWIM3, WFDC10A, WFDC6, WFDC5, WFDC13, WFDC11, WFDC9, TP53TG5, WFDC10B, KCNS1, SPINT4, MMP9, SLC35C2, PIGT, PI3, PLTP, CTSA, ZNF334, DBNDD2, EPPIN, SLC12A5, NCOA5, SDC4, ELMO2, ZNF335, PCIF1, SEMG1, SEMG2, CDH22, SLC13A3, SLPI, STK4, TNNC2, SYS1-DBNDD2, MKRN7P, MATN4, SYS1, WFDC8, SNX21, NA NA NA NA NA NA NA NA NA LTS-041 ZSWIM1, CD40) 0.384650825068253 89 0.129789426376662 1.5967417365245 2909 0.623468119093529 5 3 2 -6.73386939076285 LTS-041 NA NA NA NA LTS-041 chr20 45214053 45315769 101717 * c(TP53RK, SLC13A3) 0.406 1 NA 1.59784663521564 131 0.373680383178933 5 5 0 -5.76455612737926 LTS-041 chr20 45315770 61522352 16206583 * c(SNORD12B, MIR298, SLCO4A1-AS1, LOC100131496, DPH3P1, CDH4, MIR1257, MIR4325, MIR3194, MTRNR2L3, MIR3616, LOC100506384, SLMO2-ATP5E, MIR4756, MIR4758, MIR4532, MIR4533, MIR5095, LINC00659, ATP9A, TRERNA1, OGFR-AS1, SYCP2, CEBPB, ARFGEF2, TCFL5, ADRM1, OGFR, DIDO1, HRH3, TP53RK, FAM210B, PHACTR3, TSHZ2, C20orf85, ZNF831, MIR1-1HG, COL9A3, GATA5, GCNT7, CBLN4, CTCFL, FAM65C, RBBP8NL, CSE1L, CSTF1, APCDD1L-AS1, NA NA NA NA NA NA NA NA NA LTS-041 GNAS-AS1, LSM14B, CTSZ, CYP24A1, APCDD1L, EDN3, FAM209A, EYA2, SLC9A8, ADNP, ZMYND8, SPO11, C20orf166-AS1, SS18L1, MTG2, SNORD12C, MOCS3, GNAS, SLCO4A1, LINC00494, LINC01270, C20orf197, MIR646HG, KCNB1, KCNG1, TMEM189, TMEM189-UBE2V1, FAM209B, LAMA5, SUMO1P1, MIR1-1, MIR133A2, MIR296, MC3R, ZFAS1, NFATC2, NTSR1, PRELID3B, PCK1, ATP5E, NELFCD, RTFDC1, PFDN4, PPP1R3D, MRGBP, PPP4R1L, RBM38, BCAS4, DDX27, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 ZFP64, DOK5, RNF114, SULF2, PSMA7, PMEPA1, CASS4, SALL4, ZNFX1, PTGIS, RAB22A, PREX1, PTPN1, CDH26, RPS21, FAM217B, BMP7, SNAI1, STAU1, AURKA, TAF4, SNORD12, MIR645, TFAP2C, UBE2V1, ZNF217, NPEPL1, TUBB1, ZBP1, SLC2A10, CABLES2, NCOA3, PARD6B, RAE1, BCAS1, STX16, DPM1, VAPB, B4GALT5, SPATA2, OSBPL2) 0.421887592194539 245 0.0852694252035276 1.55475252115346 10727 0.456334554593497 5 3 2 -6.93982440769743 LTS-041 NA NA NA NA LTS-041 chr20 61522353 61576851 54499 * c(DIDO1, GID8) 0 1 NA 1.50924132241602 143 0.274726037079889 5 5 0 -5.76686739504536 LTS-041 chr20 61576852 62037758 460907 * c(LINC00029, LINC01056, FLJ16779, MIR4326, MIR3196, CHRNA4, BHLHE23, NKAIN4, KCNQ2, MIR124-3, YTHDF1, GID8, ARFGAP1, COL20A1, SLC17A9, LOC63930, HAR1A, HAR1B, BIRC7) 0.214403214655827 13 0.212157114011388 1.63257142730374 739 0.902226659876621 6 5 1 -6.74161457158026 LTS-041 chr20 62037759 62038277 519 * KCNQ2 0.46 1 NA 1.5436271850076 10 0.745889364748181 5 5 0 -5.76441169197624 LTS-041 chr20 62038278 62872249 833972 * c(UCKL1-AS1, MIR941-1, MIR941-3, MIR1914, RTEL1-TNFRSF6B, ARFRP1, RGS19, ZBTB46, SAMD10, ABHD16B, EEF1A2, LKAAEAR1, PRPF6, GMEB2, NPBWR2, LINC00176, KCNQ2, MYT1, OPRL1, STMN3, RTEL1, SOX18, LIME1, UCKL1, SLC2A4RG, ZNF512B, PTK6, SRMS, TCEA2, MIR647, TPD52L2, FNDC11, PPDPF, DNAJC5, ZGPAT, HELZ2, TNFRSF6B) 0.407254207560589 61 0.1169827085443 1.569984841986 2347 0.471316652693352 5 3 2 -6.75786878493516 LTS-041 chr20 62872250 62959313 87064 * c(LINC00266-1, MYT1, PCMTD2) NA 0 NA 1.5236972106819 121 0.532305869242254 5 NA NA -5.76520808610644 LTS-041 chr21 9825764 9825838 75 * MIR3648-1 0.262 1 NA 2.097 1 NA NA NA NA NA LTS-041 chr21 9825839 10793961 968123 * c(TEKT4P2, MIR3687-1, MIR3648-1) 0.286976488184894 17 0.0855504237277642 0.974996299562119 63 1.43863453903956 4 3 1 -6.79753317625623 LTS-041 chr21 10793962 10862591 68630 * character(0) NA 0 NA 0.651 1 NA NA NA NA NA LTS-041 chr21 10862592 10959817 97226 * TPTE 0.290936793347146 4 0.0617386966712666 0.653491885821353 67 0.467807767348209 1 1 0 -6.77308247379983 LTS-041 chr21 10959818 10969063 9246 * TPTE NA 0 NA 1.44 1 NA NA NA NA NA LTS-041 chr21 10969064 11059877 90814 * c(BAGE, TPTE, BAGE3) 0.291581025803559 11 0.103179455319361 1.14400696464341 55 1.02498490355968 4 3 1 -6.74806987723611 LTS-041 chr21 11059878 11098768 38891 * c(BAGE, BAGE3) NA 0 NA 1.84473404015433 8 0.60950540546062 6 NA NA -5.76444498262104 LTS-041 chr21 14745307 15399864 654558 * c(MIR3156-3, POTED, ANKRD20A11P, NA) 0.446 1 NA 0.823994053651273 77 0.383002769791298 2 2 0 -5.76582678257658 LTS-041 chr21 15399865 17102824 1702960 * c(SAMSN1-AS1, LIPI, ABCC13, USP25, LOC388813, RBM11, SAMSN1, HSPA13, NRIP1) 0.365074045936277 14 0.134792962936286 0.94944001614841 533 0.276776601807897 2 1 1 -6.94140190645436 LTS-041 chr21 17102825 17115561 12737 * USP25 NA 0 NA 1.305 1 NA NA NA NA NA LTS-041 chr21 17115562 22914849 5799288 * c(LINC01549, RNU6-67P, BTG3, CHODL, CXADR, C21orf91-OT1, USP25, LINC00320, MIR99AHG, MIRLET7C, MIR125B2, MIR99A, NCAM2, CHODL-AS1, C21orf91, TMPRSS15) 0.40766017415111 20 0.0625535560014061 1.09142484997012 912 0.371302653374664 3 2 1 -6.99543370470793 LTS-041 chr21 22914850 30324676 7409827 * c(MIR4759, ADAMTS5, MIR155HG, CYYR1, LINC00161, LINC00314, GABPA, LTN1, D21S2088E, LINC00515, N6AMT1, LOC339622, APP, LINC00317, MIR155, ATP5J, LINC00158, LINC00113, LINC00308, MRPL39, JAM2, ADAMTS1) 0.378516696266923 24 0.100302007724787 0.908497045225959 1170 0.312642899833105 2 1 1 -6.98908468647308 LTS-041 chr21 30324677 30325560 884 * LTN1 NA 0 NA 0.627 1 NA NA NA NA NA LTS-041 chr21 30325561 33041025 2715465 * c(KRTAP25-1, KRTAP20-4, KRTAP22-2, KRTAP21-3, GRIK1-AS2, MIR4327, RWDD2B, USP16, CCT8, KRTAP13-1, LINC00189, KRTAP15-1, LTN1, CLDN17, LINC00307, KRTAP13-4, GRIK1, KRTAP8-1, KRTAP11-1, KRTAP19-1, KRTAP13-2, KRTAP13-3, KRTAP23-1, KRTAP6-1, KRTAP6-2, KRTAP6-3, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP20-1, KRTAP20-2, KRTAP21-1, KRTAP21-2, KRTAP22-1, KRTAP20-3, KRTAP26-1, MAP3K7CL, BACH1, GRIK1-AS1, NA NA NA NA NA NA NA NA NA LTS-041 KRTAP24-1, KRTAP27-1, SOD1, TIAM1, KRTAP19-8, CLDN8) 0.376012151520889 48 0.125040913517102 0.812840529848463 1487 0.248742477763284 2 1 1 -6.77953013458386 LTS-041 NA NA NA NA LTS-041 chr21 33041026 33041098 73 * SOD1 NA 0 NA 1.024 1 NA NA NA NA NA LTS-041 chr21 33041099 34163763 1122665 * c(PAXBP1-AS1, LINC00159, TCP10L, HUNK, C21orf62-AS1, MIS18A, C21orf62, MRAP, C21orf59, SCAF4, EVA1C, SOD1, SNORA80A, URB1-AS1, SYNJ1, PAXBP1, URB1) 0.404498057767191 15 0.0582864845887474 0.921542103750072 1179 0.388230040172113 2 1 1 -6.79043185500799 LTS-041 chr21 34163764 34163862 99 * c(C21orf62-AS1, C21orf62) NA 0 NA 0.824 1 NA NA NA NA NA LTS-041 chr21 34163863 37771983 3608121 * c(LOC100133286, IL10RB-AS1, LINC00649, LINC01426, LOC100506403, CBR3-AS1, OLIG2, LINC00310, OLIG1, RCAN1, MORC3, GART, DONSON, IFNAR1, IFNAR2, IFNGR2, IL10RB, KCNE1, ATP5O, LINC00160, SMIM11A, C21orf62-AS1, SETD4, CLIC6, DNAJC28, C21orf62, ITSN1, MRPS6, SLC5A3, SON, LINC01548, TMEM50B, MIR802, RUNX1-IT1, CHAF1B, RUNX1, CBR1, CBR3, CRYZL1, DOPEY2, KCNE2) 0.390318388437996 45 0.0835046239571332 0.842291757181458 3310 0.601415252239827 2 1 1 -6.73377023661444 LTS-041 chr21 37771984 37775018 3035 * CHAF1B NA 0 NA 1.782 1 NA NA NA NA NA LTS-041 chr21 37775019 40250904 2475886 * c(DSCR4, DSCR3, DYRK1A, ERG, ETS2, CLDN14, DSCR9, DSCR10, HLCS, KCNJ6, KCNJ15, LINC00114, PIGP, RIPPLY3, SIM2, TTC3, CHAF1B, DSCR8) 0.389388622542836 31 0.101285638889041 1.0104752775626 1565 0.573266664165949 3 2 1 -6.80134762813368 LTS-041 chr21 40250905 40546684 295780 * character(0) NA 0 NA 1.505 1 NA NA NA NA NA LTS-041 chr21 40546685 40566372 19688 * c(BRWD1, PSMG1) 0.435 1 NA 1.31602341403925 217 0.370415056452577 4 4 0 -5.7645294289083 LTS-041 chr21 40566373 40669200 102828 * BRWD1 0 1 NA 1.36279130205128 253 0.42294064663564 4 4 0 -5.76441196686075 LTS-041 chr21 40669201 42218626 1549426 * c(DSCAM-AS1, MIR4760, BRWD1-AS1, DSCAM-IT1, B3GALT5, B3GALT5-AS1, LCA5L, IGSF5, DSCAM, NA, HMGN1, PCP4, BRWD1, SH3BGR, WRB) 0.300381049355024 12 0.113534803100862 1.4097389696684 708 0.429954487872675 4 3 1 -6.74008917683755 LTS-041 chr21 42218627 42218821 195 * DSCAM NA 0 NA 0.943 1 NA NA NA NA NA LTS-041 chr21 42218822 44296887 2078066 * c(MIR3197, WDR4, LINC00479, UMODL1-AS1, DSCAM, PLAC4, BACE2, C2CD2, LINC00323, MX1, MX2, ZBTB21, PDE9A, UBASH3A, SLC37A1, LINC00112, LINC00111, FAM3B, RIPK4, PRDM15, TMPRSS3, TFF1, TFF2, TFF3, TMPRSS2, RSPH1, UMODL1, ABCG1) 0.363867271599932 72 0.114976542991102 1.02679418005729 2124 0.3944876289951 3 2 1 -6.77557259692478 LTS-041 chr21 44296888 44299490 2603 * WDR4 NA 0 NA 1.728 1 NA NA NA NA NA LTS-041 chr21 44299491 46707794 2408304 * c(ITGB2-AS1, LRRC3-AS1, ADARB1, WDR4, HSF2BP, LINC00313, TSPEAR-AS2, CRYAA, CSTB, SIK1, RRP1B, POFUT2, ICOSLG, LINC00319, AATBC, DNMT3L, AIRE, KRTAP12-2, KRTAP12-1, KRTAP10-10, ITGB2, PICSAR, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-11, KRTAP10-2, KRTAP10-5, KRTAP10-8, KRTAP10-3, KRTAP12-3, KRTAP12-4, KRTAP10-12, NDUFV3, PFKL, PKNOX1, TSPEAR, AGPAT3, PWP2, SUMO3, TRAPPC10, TRPM2, LINC00163, NA NA NA NA NA NA NA NA NA LTS-041 SSR4P1, U2AF1, UBE2G2, PTTG1IP, C21orf2, LRRC3, C21orf33, LINC01547, FAM207A, PDXK, RRP1, CBS) 0.308494152858613 108 0.109479856403436 1.2816956042342 3632 0.473296262807687 4 3 1 -6.75916287994888 LTS-041 NA NA NA NA LTS-041 chr21 46707795 46707798 4 * POFUT2 NA 0 NA 1.077 1 NA NA NA NA NA LTS-041 chr21 46707799 47650514 942716 * c(LOC100129027, COL18A1-AS2, FTCD, MCM3AP-AS1, COL6A1, COL6A2, POFUT2, COL18A1-AS1, LSS, PCBP3, LOC642852, SLC19A1, COL18A1, SPATC1L) 0.350611337714896 80 0.118715044821996 1.14309629128175 1213 0.394916418588031 3 2 1 -6.74693922131876 LTS-041 chr21 47650515 47654960 4446 * MCM3AP-AS1 NA 0 NA 0.841 1 NA NA NA NA NA LTS-041 chr21 47654961 48063476 408516 * c(DIP2A-IT1, MCM3AP-AS1, DIP2A, PRMT2, PCNT, C21orf58, YBEY, S100B, MCM3AP) 0.328457444318478 5 0.200737888800296 1.01664850733667 901 0.363583019794171 3 2 1 -6.76630918902543 LTS-041 chr21 48063477 48084993 21517 * PRMT2 NA 0 NA 0.956659008849107 77 0.230103870420516 2 NA NA -5.76829556667498 LTS-041 chr22 16157787 16887895 730109 * c(POTEH, OR11H1) 0.453 1 NA 1.28770383269602 5 0.206152370832838 4 4 0 -5.80005334521788 LTS-041 chr22 16887896 18077394 1189499 * c(CECR7, CECR5-AS1, GAB4, CCT8L2, XKR3, IL17RA, ANKRD62P1-PARP4P3, HSFY1P1, CECR6, CECR5, CECR3, CECR2, TPTEP1, CECR1, ATP6V1E1, SLC25A18) 0.328117031864739 48 0.116237528881886 0.986757738702635 1058 0.411952986296009 3 2 1 -6.84804029140821 LTS-041 chr22 18077395 20307664 2230270 * c(FLJ41941, MIR1286, MIR1306, MIR3198-1, MIR3618, SEPT5-GP1BB, MIR4761, TXNRD2, USP18, C22orf39, TANGO2, COMT, LINC00895, LINC00896, TSSK2, BCL2L13, DGCR11, DGCR9, DGCR5, DGCR10, GGT3P, TRMT2A, LOC284865, GSC2, ZDHHC8, CCDC188, MIR185, ARVCF, TUBA8, ATP6V1E1, DGCR8, GNB1L, PEX26, PRODH, MICAL3, RANBP1, BID, MRPL40, RTN4R, SLC25A1, TBX1, MIR648, CLDN5, HIRA, UFD1L, C22orf29, DGCR6, CLTCL1, DGCR14, CDC45, NA NA NA NA NA NA NA NA NA LTS-041 DGCR6L, DGCR2) 0.342540143154717 70 0.109778630065453 1.08005258912489 3406 0.349728954336446 3 2 1 -6.76506020905619 LTS-041 NA NA NA NA LTS-041 chr22 20307665 20378103 70439 * c(TMEM191B, NA) NA 0 NA 0.037 1 NA NA NA NA NA LTS-041 chr22 20378104 20721039 342936 * c(TMEM191B, PI4KAP1, RIMBP3) NA 0 NA 0.712343122549952 39 0.253958291388925 2 NA NA -5.85376483440709 LTS-041 chr22 20721040 20721803 764 * character(0) NA 0 NA 1.114 1 NA NA NA NA NA LTS-041 chr22 20721804 26565564 5843761 * c(DDTL, MIR301B, LOC100128531, IGLL5, TUBA3FP, ZNF280A, SGSM1, ADORA2A, CRKL, ZNF280B, CRYBB2, CRYBB2P1, CRYBB3, AIFM3, YDJC, ZDHHC8P1, C22orf15, GRK3, CCDC116, DDT, HIC2, SPECC1L, CABIN1, PRAME, SEZ6L, SDF2L1, PPIL2, TMEM211, GSTTP1, POM121L1P, FBXW4P1, POM121L4P, RGL4, GGT1, GGT5, RSPH14, GNAZ, MIF-AS1, GSTT1, POM121L9P, POM121L8P, YPEL1, VPREB3, SERPIND1, IGLL1, PI4KAP2, LRRC75B, LOC391322, LRRC74B, NA NA NA NA NA NA NA NA NA LTS-041 BCRP2, CHCHD10, MIR130B, MIF, MMP11, THAP7-AS1, P2RX6P, PIWIL3, DRICH1, MED15, UPB1, PI4KA, MAPK1, SUSD2, BCR, BCRP3, TMEM191C, ADORA2A-AS1, POM121L10P, LL22NC03-63E9.3, CES5AP1, GSTTP2, SLC7A4, SMARCB1, SLC2A11, SNRPD3, TOP1P2, MIR650, UBE2L3, VPREB1, ZNF70, ZNF74, THAP7, LZTR1, GUCD1, TMEM191A, MYO18B, KLHL22, KIAA1671, TOP3B, SCARF2, GGTLC2, P2RX6, GUSBP11, DERL3, IGLL3P, LRP5L, SNAP29, RAB36, PPM1F, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 BMS1P20) 0.349684749497369 118 0.137469773322829 1.03981672681923 6304 0.371283420799452 3 2 1 -6.8325114489551 LTS-041 NA NA NA NA LTS-041 chr22 26565565 26688193 122629 * SEZ6L NA 0 NA 0.599 1 NA NA NA NA NA LTS-041 chr22 26688194 26769308 81115 * SEZ6L 0.286 1 NA 0.651938816200265 77 0.175259339133526 1 1 0 -5.78487616605559 LTS-041 chr22 26769309 26777025 7717 * SEZ6L 0.275 1 NA 0.615575527656532 31 0.0989920600704382 1 1 0 -5.76591534726249 LTS-041 chr22 26777026 26951259 174234 * c(MIR548J, SEZ6L, TFIP11, SRRD, ASPHD2, TPST2, HPS4) 0.350294721746779 9 0.0792559146057882 0.672884362745824 446 0.189707885818843 2 1 1 -7.04851630476185 LTS-041 chr22 26951260 26995215 43956 * c(MIR548J, TPST2) NA 0 NA 1.206 1 NA NA NA NA NA LTS-041 chr22 26995216 42906500 15911285 * c(LOC100130899, NDUFA6-AS1, MIR1281, HMGXB4, MIR3200, MIR3199-2, MIR3199-1, TOM1, MIR3909, MIR3653, MIR3928, LARGE-AS1, LL22NC01-81G9.3, LOC100506472, MIR4534, MIR4766, MIR4764, ZNRF3-AS1, APOBEC3A_B, DNAL4, SF3A1, CACNG2, TAB1, SLC25A17, DDX17, RASL10A, GAS2L1, RFPL3S, RFPL3, RFPL2, RFPL1S, TOB2, KDELR3, IFT27, TRIOBP, CDC42EP1, DMC1, CHEK2, PIK3IP1, FAM83F, ELFN2, C1QTNF6, TNFRSF13C, EMID1, ANKRD54, APOBEC3D, NA NA NA NA NA NA NA NA NA LTS-041 SELENOM, CRYBA4, CRYBB1, CSF2RB, CSNK1E, HSCB, CCDC117, HORMAD2, DUSP18, MORC2-AS1, C22orf42, ENTHD1, DNAJB7, CHADL, MEI1, FAM109B, NFAM1, CYP2D7, CYP2D6, ADSL, AP1B1, CABP7, TMPRSS6, APOBEC3H, WBP2NL, POLR3H, RNF215, APOBEC3A, APOBEC3F, EP300, EWSR1, MORC2, TNRC6B, ZC3H7B, TTC28, GCAT, CBX6, NPTXR, PES1, CBX7, SLC16A8, SEC14L2, RBFOX2, RASD2, PATZ1, SH3BP1, PITPNB, PISD, OSBP2, MAFF, APOL2, AP1B1P1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 PRR14L, BPIFC, XRCC6, C22orf31, C22orf24, CBY1, SUN2, FBXO7, RHBDD3, TXN2, TMEM184B, GGA1, SEC14L3, SNORD43, INPP5J, CYTH4, CSDC2, RRP7A, APOBEC3C, DESI1, SGSM3, MCHR1, TTC28-AS1, SEC14L4, CARD10, UQCR10, H1F0, HMOX1, SLC35E4, LOC339666, TEX33, LINC00634, IL2RB, KCNJ4, SDC4P, OGFRP1, LGALS1, LGALS2, LIF, LIMK2, LOC400927, MIR33A, MB, MCM5, MFNG, MGAT3, MN1, MPST, MIAT, SHISA8, MYH9, NAGA, ATF4, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 NCF4, NDUFA6, DRG1, NEFH, NF2, SNU13, ACO2, OSM, PLA2G3, EIF3L, RTCB, MTFP1, PDGFB, PMM1, POLR2F, MIEF1, TUG1, CCDC157, ZMAT5, SEPT3, EIF4ENIF1, TOMM22, PDXP, MKL1, PVALB, RAC2, RANGAP1, RFPL1, APOBEC3G, RPL3, XPNPEP3, FAM227A, SLC5A1, SMTN, SLC5A4, GATSL3, SOX10, SREBF2, SSTR3, ST13, TCF20, TCN2, TEF, TIMP3, MIR658, MIR659, TST, SEC14L6, XBP1, YWHAH, CENPM, NOL12, C22orf46, KCTD17, CCDC134, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 FOXRED2, BAIAP2L2, APOL6, APOL5, APOL4, APOL3, SYN3, L3MBTL2, TBC1D10A, PLA2G6, KREMEN1, ZNRF3, ASCC2, C22orf23, GALR3, PHF5A, NIPSNAP1, KIAA1656, MICALL1, APOL1, THOC5, EIF3D, MTMR3, CACNA1I, RNF185, SYNGR1, ISX, RPS19BP1, SMDT1, LARGE1, SERHL, GRAP2, PICK1, GAL3ST1, GTPBP1, APOBEC3B, DEPDC5, SFI1, JOSD1, RBX1) 0.338263702193526 349 0.126655960858693 0.742928564902494 19201 0.243107509653838 2 1 1 -8.70986365568933 LTS-041 NA NA NA NA LTS-041 chr22 42906501 42976985 70485 * c(SERHL2, RRP7A, RRP7BP, SERHL) 0.339103534666424 2 0.142128463018496 1.24289112574164 141 0.426334738700112 3 2 1 -6.75716659143591 LTS-041 chr22 42976986 42979694 2709 * RRP7BP NA 0 NA 0.7 1 NA NA NA NA NA LTS-041 chr22 42979695 43539176 559482 * c(PACSIN2, CYB5R3, TTLL1, ARFGAP3, RNU12, ATP5L2, MCAT, A4GALT, BIK, POLDIP3) 0.375377532130864 6 0.106355379114865 0.754290443192126 556 0.208606201661965 2 1 1 -6.84412636937534 LTS-041 chr22 43539177 43625225 86049 * c(TTLL12, MCAT, TSPO, SCUBE1) 0.331736642419955 10 0.102070999254876 0.622332719794132 218 0.19463131758917 1 1 0 -6.91497402658299 LTS-041 chr22 43625226 43633977 8752 * SCUBE1 0.054 1 NA 0.634920217267196 16 0.138635974167362 1 1 0 -5.76649592101909 LTS-041 chr22 43633978 45567580 1933603 * c(NUP50-AS1, EFCAB6-AS1, NUP50, PHF21B, PNPLA5, ARHGAP8, SAMM50, SULT4A1, PARVB, LINC00207, LINC00229, PRR5-ARHGAP8, PRR5, PARVG, EFCAB6, MPPED1, SCUBE1, PNPLA3, LDOC1L, KIAA1644) 0.161337495209038 46 0.133083884410755 0.609644129638042 1235 0.271680717891121 1 1 0 -7.18028066589845 LTS-041 chr22 45567581 45580836 13256 * NUP50 0.242 1 NA 0.590722064192813 30 0.143974315238086 1 1 0 -5.76449924808684 LTS-041 chr22 45580837 50479763 4898927 * c(LINC01310, LINC00899, MIR1249, MIR3201, MIR3619, MIR4763, MIR4762, MIR4535, PKDREJ, NUP50, PRR34-AS1, CDPF1, GTSE1-AS1, FBLN1, GRAMD4, KIAA0930, BRD1, TBC1D22A, ATXN10, FAM19A5, RIBC2, SMC1B, LOC284933, C22orf34, MIRLET7BHG, LINC00898, IL17REL, MIRLET7A3, MIRLET7B, PIM3, GTSE1, PPARA, FAM118A, TTC38, PRR34, TRMU, CERK, LOC730668, UPK3A, WNT7B, ALG12, CRELD2, NA, CELSR1, ZBED4) 0.313395297159741 118 0.148609548772556 0.607073885437854 3327 0.205984514148786 1 1 0 -6.89428932123591 LTS-041 chr22 50479764 50480040 277 * character(0) NA 0 NA 0.49 1 NA NA NA NA NA LTS-041 chr22 50480041 50618306 138266 * c(MLC1, MOV10L1, PANX2) 0.370411322170531 25 0.104115192615359 0.530041298422646 412 0.148358255801108 1 1 0 -7.2252625629494 LTS-041 chr22 50618307 51021495 403189 * c(CHKB-AS1, CHKB, KLHDC7B, CPT1B, TYMP, PLXNB2, NCAPH2, CHKB-CPT1B, DENND6B, ODF3B, MIOX, MAPK11, PANX2, MAPK12, SBF1, SYCE3, ADM2, TRABD, SELENOO, HDAC10, TUBGCP6, LMF2, PPP6R2, SCO2) 0.248693739797729 49 0.165360338856289 0.63992896781306 1866 0.21030420173931 1 1 0 -6.79817851164741 LTS-041 chr22 51021496 51154141 132646 * c(CHKB-AS1, MAPK8IP2, ARSA, SHANK3) 0.372006273500015 7 0.107574780191889 0.579263561978963 256 0.197538268467634 2 1 1 -7.03080918627786 LTS-041 chr22 51154142 51220846 66705 * c(RABL2B, RPL23AP82, ACR, SHANK3) NA 0 NA 0.501631638281455 165 0.162590304659452 1 NA NA -5.79749604809404 LTS-041 chrX 2699993 2779749 79757 * c(XG, GYG2) 0.286 1 NA 0.839882511278796 89 0.234083388863408 2 2 0 -5.76442346529912 LTS-041 chrX 2779750 37913612 35133863 * c(GS1-600G8.3, LINC01546, SUPT20HL1, PHKA2-AS1, LINC01203, SCARNA9L, CLDN34, MIR23C, PIR-FIGF, MIR4768, MIR4770, MIR4767, PTCHD1-AS, ZFX-AS1, PHEX-AS1, ADGRG2, SCML2, PRDX4, RAI2, MSL3, IL1RAPL1, CA5B, CLCN4, BEND2, PTCHD1, PPP4R3CP, MAGEB10, DCAF8L1, VENTXP1, MAGEB16, ASB11, ASB9, CYBB, ZNF645, FAM47A, MOSPD2, MAGEB6, DDX53, FAM47B, NA, SUPT20HL2, TCEANC, ARX, FAM9A, FAM9B, FAM9C, DMD, NR0B1, EIF1AX, NA NA NA NA NA NA NA NA NA LTS-041 EIF2S3, FANCB, VEGFD, CNKSR2, ACOT9, SMPX, CXorf58, CXorf23, MAP7D2, KLHL34, TAB3, HYPM, MXRA5, EGFL6, AMELX, VCX, GK, GLRA2, GPM6B, CFAP47, MAGEB18, GRPR, SH3KBP1, HCCS, CA5BP1, LANCL3, DCAF8L2, ARSH, MAGEB5, TLR8-AS1, SHROOM2, ANOS1, MAP3K15, LOC389906, ARHGAP6, YY2, MAGEB1, MAGEB2, MAGEB3, MAGEB4, STS, ARSD, ARSE, ARSF, VCX3B, MID1, FTH1P18, FAM47C, NHS, GPR143, TLR7, TLR8, MBTPS2, VCX2, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 VCX3A, PDHA1, PDK3, PHEX, PHKA2, PIGA, FTHL17, POLA1, PPEF1, GEMIN8, TXLNG, WWC3, PRKX, PRPS2, PRRG1, CTPS2, TMEM27, NLGN4X, ACE2, RBBP7, RPS6KA3, RS1, SAT1, SCML1, TRAPPC2, NA, MAGEB17, BMX, SMS, SCARNA23, CDKL5, TBL1X, DYNLT3, TMSB4X, MIR651, LOC729609, XK, ZFX, APOO, S100G, CXorf21, KLHL15, PUDP, PNPLA4, ZRSR2, TMEM47, OFD1, PIR, INE2, AP1S2, GYG2, REPS2, ATXN3L, RAB9A, SYAP1, SYTL5, PCYT1B, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 FRMPD4) 0.34803583119694 132 0.146002686109349 0.853099944556347 12974 0.258412064599723 2 1 1 -6.83296109848148 LTS-041 NA NA NA NA LTS-041 chrX 37913613 37931282 17670 * SYTL5 NA 0 NA 0.976 1 NA NA NA NA NA LTS-041 chrX 37931283 38665752 734470 * c(OTC, MID1IP1, RPGR, TSPAN7, SRPX, SYTL5) 0.352871295195933 3 0.092001811576367 1.01963400772272 489 0.244932435003996 3 2 1 -6.79127334308692 LTS-041 chrX 38665753 41782622 3116870 * c(LOC100132831, ATP6AP2, CXorf38, DDX3X, GPR82, GPR34, LINC01281, MPC1L, BCOR, MID1IP1, NYX, USP9X, CASK, MED14) 0.344942777010621 10 0.136558656505791 0.876839142443684 1389 0.228978521926603 2 1 1 -6.86134491302876 LTS-041 chrX 42636689 44703935 2067247 * c(FUNDC1, MAOA, MAOB, NDP, DUSP21, EFHC2, PPP1R2P9) 0.327435593192466 5 0.0685105831240692 1.40234713528122 433 0.337186872216873 4 3 1 -6.79336375510424 LTS-041 chrX 44703936 44820722 116787 * c(DUSP21, KDM6A) NA 0 NA 1.17907294364698 21 0.311258994897757 3 NA NA -5.76749145790285 LTS-041 chrX 44820723 44833851 13129 * KDM6A NA 0 NA 1.872 1 NA NA NA NA NA LTS-041 chrX 44833852 46358867 1525016 * c(LOC392452, MIR221, MIR222, KRBOX4, ZNF674, KDM6A, CXorf36) 0 1 NA 1.7401171953801 403 0.454612895787839 5 5 0 -5.78422993497715 LTS-041 chrX 46358868 46940531 581664 * c(ZNF674-AS1, CHST7, RP2, ZNF674, LINC01545, SLC9A7, RGN, JADE3) 0 3 0 1.75021489633061 421 0.47894110534477 0 0 0 -Inf LTS-041 chrX 46940532 48103104 1162573 * c(SNORA11C, UXT-AS1, MIR4769, ELK1, SSX6, ZNF81, ARAF, SPACA5, CXXC1P1, CDK16, CFP, NDUFB11, ZNF630, SSX5, SYN1, TIMP1, UBA1, ZNF182, ZNF41, ZNF157, USP11, RBM10, UXT, INE1, RGN) 0.132086770642648 13 0.0958562625858273 2.08110328730108 1635 0.614536264736327 6 6 0 -6.88493945524939 LTS-041 chrX 48103105 48103185 81 * character(0) NA 0 NA 1.411 1 NA NA NA NA NA LTS-041 chrX 48103186 51640388 3537203 * c(GAGE12F, GAGE8, HDAC6, GAGE12D, MIR500B, PQBP1, SSX3, TIMM17B, EBP, PIM2, WDR45, PRAF2, CLCN5, DGKK, USP27X-AS1, NUDT10, GSPT2, FTSJ1, GAGE1, GAGE2C, GAGE4, GATA1, GAGE2E, GPKOW, PCSK1N, SSX9, CCDC22, ERAS, KCND1, USP27X, GLOD5, PRICKLE3, MIR188, TBC1D25, FOXP3, PLP2, NUDT11, OTUD5, GRIPAP1, MIR362, MIR500A, MIR501, MIR502, SHROOM4, RBM3, NA, GAGE2B, GAGE13, WDR13, PORCN, SSX1, SUV39H1, SYP, NA NA NA NA NA NA NA NA NA LTS-041 MIR532, TFE3, MIR660, GAGE12J, GAGE2D, GAGE2A, SLC35A2, WAS, CACNA1F, MAGIX, CCNB3, PAGE1, AKAP4, PPP1R3F, CCDC120, BMP15, SLC38A5, MAGED1, PAGE4) 0.158044909609939 31 0.138757070923189 1.70470255384706 3657 0.537701201012774 5 5 0 -6.85260044767976 LTS-041 NA NA NA NA LTS-041 chrX 51640389 51640611 223 * MAGED1 NA 0 NA 0.888 1 NA NA NA NA NA LTS-041 chrX 51640612 55249203 3608592 * c(MTRNR2L10, HUWE1, MAGED2, RIBC1, XAGE3, XAGE5, PAGE2, ALAS2, FGD1, IQSEC2, PHF8, APEX2, SSX7, SSX8, HSD17B10, ITIH6, PAGE2B, MIRLET7F2, MIR98, SPANXN5, PFKFB1, GPR173, GNL3L, FAM120C, TSPYL2, WNK3, XAGE1B, SNORA11, TRO, FAM156B, MAGED4B, KDM5C, SMC1A, TSR2, FAM104B, PAGE5, MAGED1) 0.299095068641462 42 0.186590487089352 1.07094380477715 3142 0.346933415758202 3 2 1 -6.82559568814479 LTS-041 chrX 55249204 55250292 1089 * PAGE5 NA 0 NA 1.26 1 NA NA NA NA NA LTS-041 chrX 55250293 57161117 1910825 * c(MIR4536-1, RRAGB, KLF8, FOXR2, PAGE3, USP51, SPIN3, MAGEH1, UBQLN2, UQCRBP1, SPIN2B, LINC01420, PAGE5) 0.112846059714001 4 0.241 1.20580972541492 450 0.430914561935653 3 3 0 -6.79185973383159 LTS-041 chrX 57161118 57937169 776052 * c(FAAH2, ZXDB, SPIN2A, ZXDA) NA 0 NA 1.33510374045154 321 0.328116741581284 4 NA NA -5.76666367754915 LTS-041 chrX 61999880 63413032 1413153 * c(MIR1468, AMER1, SPIN4, ARHGEF9, LINC01278) 0.376 1 NA 1.36085735994228 393 0.370629276923606 4 4 0 -5.7644957776913 LTS-041 chrX 63413033 65835962 2422930 * c(VSIG4, AMER1, ASB12, ZC3H12B, MIR223, MSN, MTMR8, ZC4H2, EDA2R, LAS1L, FRMD8P1, HEPH) 0.103803638815235 4 0.2165 1.43616910225827 869 0.396868183844203 4 4 0 -6.75899240643974 LTS-041 chrX 66764481 67885432 1120952 * c(YIPF6, AR, OPHN1, STARD8) 0.309107920336423 6 0.158403808876765 1.18513613692927 545 0.330416531888663 3 2 1 -6.83897928503529 LTS-041 chrX 67885433 67932729 47297 * STARD8 NA 0 NA 1.841 1 NA NA NA NA NA LTS-041 chrX 67932730 68725970 793241 * c(EFNB1, FAM155B, PJA1, STARD8) 0.226869904363731 8 0.156013506741289 1.49402452005876 293 0.376250604134531 5 4 1 -6.7842209861441 LTS-041 chrX 68725971 68748859 22889 * FAM155B NA 0 NA 0.679 1 NA NA NA NA NA LTS-041 chrX 68748860 78615965 9867106 * c(MIR374B, FTX, MIR4328, MIR374C, MIR676, CDX4, CYSLTR1, COX7B, MAP2K4P1, OTUD6A, UPRT, MAGEE2, CXorf65, AWAT1, AWAT2, ZDHHC15, DLG3, EDA, ZCCHC5, ABCB7, KIF4A, ITGB1BP2, GJB1, FAM155B, INGX, P2RY10, CXCR3, LPAR4, TTC3P1, SNX12, RGAG4, NHSL2, PABPC1L2A, KIAA2022, DGAT2L6, RAB41, IGBP1, IL2RG, ZCCHC13, FLJ44635, ARR3, FOXO4, LINC00891, RPS26P11, PGAM4, MIR374A, CITED1, NAP1L2, NONO, MIR384, P2RY4, NA NA NA NA NA NA NA NA NA LTS-041 RLIM, PDZD11, PBDC1, TAF9B, PGK1, PHKA1, PIN4, CHIC1, ATP7A, NLGN3, ATRX, ERCC6L, GDPD2, JPX, HDAC8, TEX11, MAGEE1, BCYRN1, RPS4X, PABPC1L2B, NAP1L6, FAM226B, SLC16A2, MIR545, TAF1, MIR421, XIST, MAGT1, GPR174, OGT, SLC7A3, FGF16, ZMYM3, TSIX, ACRC, ITM2A, MED12) 0.298852041274107 46 0.19555705272264 0.821279734727052 6352 0.261308310317989 2 1 1 -6.92904998567115 LTS-041 NA NA NA NA LTS-041 chrX 78615966 89178014 10562049 * c(UBE2DNL, CHM, DACH2, APOOL, HDX, CYLC1, FAM46D, BRWD3, RPS6KA6, SATL1, TBX22, CPXCR1, POU3F4, KLHL4, SH3BGRL, ZNF711, HMGN5, POF1B, TGIF2LX, ITM2A) 0.262973019233467 16 0.169507313018249 1.29555480372134 1849 0.390243479483892 4 3 1 -6.8875295452745 LTS-041 chrX 89178015 89293523 115509 * character(0) NA 0 NA 0.95 1 NA NA NA NA NA LTS-041 chrX 89293524 90693597 1400074 * PABPC5 NA 0 NA 0.840960588030629 67 0.260183957119359 2 NA NA -5.76449558677709 LTS-041 chrX 90693598 91066176 372579 * PCDH11X NA 0 NA 0.481 1 NA NA NA NA NA LTS-041 chrX 91066177 91138524 72348 * PCDH11X NA 0 NA 0.50298523414873 123 0.0942751897837911 1 NA NA -5.86612519440384 LTS-041 chrX 91138525 91138754 230 * PCDH11X NA 0 NA 0.811 1 NA NA NA NA NA LTS-041 chrX 91138755 101439808 10301054 * c(ARMCX4, RPL36A-HNRNPH2, TCEAL2, CSTF2, TCEAL6, TIMM8A, DIAPH2, DRP2, CENPI, NOX1, GLA, SRPX2, PCDH11X, FAM133A, RPA4, HNRNPH2, BEX5, ARL13A, XKRX, XRCC6P5, NAP1L3, ARMCX1, ARMCX3, TAF7L, ARMCX6, NXF5, PCDH19, TMEM35A, RPL36A, TNMD, BRDTP1, BTK, TSPAN6, TRMT2B, ZMAT1, SYTL4, ARMCX2) 0.346509704264409 33 0.167515473052853 0.860007613375907 2772 0.615990726751591 2 1 1 -6.78572136957667 LTS-041 chrX 101439809 101472922 33114 * character(0) NA 0 NA 0.154 1 NA NA NA NA NA LTS-041 chrX 101472923 101625090 152168 * character(0) NA 0 NA 0.239749548585156 43 0.159446662226709 0 NA NA -6.05215851252493 LTS-041 chrX 101625091 101768564 143474 * character(0) NA 0 NA 0.558 1 NA NA NA NA NA LTS-041 chrX 101768565 103438037 1669473 * c(LINC00630, ARMCX5-GPRASP2, TMSB15A, GPRASP2, FAM199X, RAB40A, H2BFWT, TMEM31, BEX3, RAB40AL, H2BFM, LOC286437, TMSB15B, TCEAL5, MORF4L2-AS1, SLC25A53, GLRA4, TCEAL9, RAB9B, PLP1, BEX1, NXF4, NXF3, BEX4, TCEAL7, ZCCHC18, ARMCX5, TCEAL4, BHLHB9, BEX2, TCEAL3, TCEAL8, TCEAL1, MORF4L2, GPRASP1) 0.46241856956289 3 0.00818535277187241 0.56149273009304 1420 0.173170877301689 2 1 1 -18.045738827725 LTS-041 chrX 103438038 104463832 1025795 * c(FAM199X, IL1RAPL2, TEX13A, ESX1) 0.051 1 NA 0.589942920431622 111 0.203297354263685 1 1 0 -5.76729448635176 LTS-041 chrX 104463833 107979661 3515829 * c(MID2, ATG4A, COL4A5, COL4A6, PIH1D3, MUM1L1, TSC22D3, NRK, IL1RAPL2, VSIG1, NUP62CL, TBC1D8B, CXorf57, RBM41, TEX13B, TEX13A, PRPS1, PSMD10, SERPINA7, RNF128, MORC4, IRS4, CLDN2, RIPPLY1) 0.135372173684115 9 0.102174007349119 0.562863832592956 2542 0.175944363920464 1 1 0 -7.76659110017819 LTS-041 chrX 108619074 124454414 15835341 * c(ZBTB33, TEX13C, MIR1912, MIR1298, MIR1277, MIR1911, MIR1264, SLC25A5-AS1, MIR764, TRPC5OS, MIR4329, MIR3978, TENM1, STAG2, PGRMC1, SLC6A14, RBMXL3, DOCK11, AMOT, AKAP14, RHOXF1, NKAPP1, DCX, ZCCHC12, AGTR2, CT83, SLC25A43, ACSL4, SEPT6, ATP1B4, KCNE5, CT47A11, SNORA69, GLUD2, GRIA3, MCTS1, C1GALT1C1, SLC25A5, GUCY2F, XIAP, HTR2C, ZCCHC16, LHFPL1, SOWAHD, IL13RA1, IL13RA2, LAMP2, LINC00890, SH2D1A, NA NA NA NA NA NA NA NA NA LTS-041 NDUFA1, PAK3, LUZP4, PLS3, WDR44, TMEM255A, MIR448, NXT2, NKRF, THOC2, KIAA1210, RGAG1, LRCH2, RPL39, CXorf56, CT47B1, UPF3B, CT47A7, SNORA35, SNORD96B, TDGF1P3, TRPC5, CT47A10, CT47A9, CT47A6, CT47A5, CT47A4, CT47A3, CT47A2, CT47A1, UBE2A, MIR766, RNF113A, NKAP, LONRF3, ALG13, CAPN6, TMEM164, CUL4B, KLHL13, CHRDL1, AMMECR1) 0.154176875906107 73 0.115834734395784 0.843699898878623 6348 0.240226114327087 2 2 0 -6.79478283460575 LTS-041 NA NA NA NA LTS-041 chrX 124454415 125955829 1501415 * c(TEX13C, PRR32, DCAF12L1, DCAF12L2) 0.11 1 NA 1.61522596161954 128 0.510930921873665 5 5 0 -5.76460211472595 LTS-041 chrX 127184934 129063835 1878902 * c(UTP14A, ACTRT1, OCRL, ZDHHC9, SASH3, SMARCA1, XPNPEP2, APLN) 0.118363727176459 6 0.111408707020592 0.556669363483279 810 0.181384447134833 1 1 0 -7.80577112972273 LTS-041 chrX 129063836 129139089 75254 * character(0) NA 0 NA 0.865 1 NA NA NA NA NA LTS-041 chrX 129139090 131507141 2368052 * c(ENOX2, GPR119, ARHGAP36, ELF4, FIRRE, OR13H1, IGSF1, RBMX2, STK26, ZNF280C, MBNL3, RAP2C, BCORL1, SLC25A14, FRMD7, AIFM1, RAB33A) 0.177635491182478 12 0.191072491399722 0.872596807039222 1370 0.363289508953817 2 2 0 -6.74883427794475 LTS-041 chrX 131507142 131760779 253638 * c(MBNL3, HS6ST2) 0.406 1 NA 0.854063138714477 218 0.255339206440004 2 2 0 -5.76479470011629 LTS-041 chrX 131760780 151996016 20235237 * c(FMR1-AS1, MIR450B, MIR890, MIR891B, MIR888, MIR892B, MIR934, MIR891A, MIR892A, LINC00892, CXorf51A, LINC00633, FGF13-AS1, CSAG4, LINC00893, CXorf51B, LINC00894, MIR320D2, MIR2114, MIR514B, MIR4330, MAMLD1, LINC00629, MAGEA10-MAGEA5, HS6ST2-AS1, MAGEA8-AS1, CDR1, SLC9A6, CETN2, PLAC1, CNGA2, SLITRK4, SPANXN3, MAGEC3, PASD1, ADGRG4, CSAG1, FMR1NB, LINC00889, FAM122B, FAM122C, NA, NA, INTS6L, ZNF449, VMA21, F9, NA NA NA NA NA NA NA NA NA LTS-041 GPC4, FGF13, FHL1, FMR1, AFF2, LDOC1, GABRA3, GABRE, FAM127B, SNORD61, GPC3, RBMX, HTATSF1, ATP11C, LINC00632, HMGB3, HPRT1, IDS, CCDC160, CXorf66, LOC389895, UBE2NL, SMIM10L2A, MIR105-1, MIR105-2, MIR106A, MIR19B2, MIR92A2, MAGEA3, MAGEA4, MAGEA5, MAGEA6, MAGEA8, MAGEA10, MAGEA11, MAGEA12, MCF2, FAM127C, CT45A3, CT45A5, SPANXN4, MTM1, SPANXN1, SPANXN2, MIR424, TFDP3, MAGEC2, VGLL1, CT45A6, CT45A1, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 CXorf40B, CT55, MIR450A1, SAGE1, GABRQ, MOSPD1, MIR363, MIR20B, MIR18B, MIR452, MIR450A2, MIR503, MIR504, MIR505, MIR506, MIR507, MIR508, MIR509-1, MIR510, MIR514A1, MIR514A2, SPANXA2-OT1, SMIM10, SMIM10L2B, SPANXC, MIR542, SOX3, SRD5A1P1, BRS3, CT45A2, ZIC3, ZNF75D, MIR767, PRRG3, MAP7D3, GPR101, CD99L2, USP26, PHF6, TMEM185A, SLITRK2, MIR503HG, MTMR1, FAM127A, FATE1, HS6ST2, TMEM257, CXorf40A, GPR50, NA NA NA NA NA NA NA NA NA NA NA NA LTS-041 MMGT1, ARHGEF6, CD40LG, MAGEC1) 0.32536623786857 80 0.169184896234635 0.858185999370951 6879 0.321609735010458 2 1 1 -6.86442746238796 LTS-041 NA NA NA NA LTS-041 chrX 151996017 153883662 1887646 * c(NA, NA, MIR718, MIR3202-2, MIR3202-1, BCAP31, CETN2, ZNF275, TREX2, PNMA5, PNCK, ZFP92, TEX28, DNASE1L1, DUSP9, EMD, ABCD1, FLNA, G6PD, OPN1MW, SRPK3, GDI1, SNORA70, PNMA3, HCFC1, CTAG2, IDH3G, IRAK1, L1CAM, ARHGAP4, MAGEA1, MECP2, ATP2B3, NSDHL, PLXNB3, ATP6AP1, AVPR2, PLXNA3, HAUS7, PDZD4, OPN1LW, RENBP, FAM3A, RPL10, BGN, SLC6A8, SSR4, TAZ, ZNF185, NAA10, UBL4A, TMEM187, LAGE3, SLC10A3, TKTL1, NA NA NA NA NA NA NA NA NA LTS-041 IKBKG, FAM50A, FAM58A) 0.377094270224459 44 0.126086204528949 0.91333734101689 4167 0.231746840725126 2 1 1 -6.87466371950819 LTS-041 NA NA NA NA LTS-041 chrX 153883663 153903535 19873 * GAB3 NA 0 NA 0.697 1 NA NA NA NA NA LTS-041 chrX 153903536 154507173 603638 * c(SMIM9, CMC4, RAB39B, CLIC2, GAB3, DKC1, F8, MPP1, MTCP1, FUNDC2, SNORA36A, SNORA56, VBP1, BRCC3) 0.328777447850271 14 0.181848037633648 0.831688268781829 1000 0.344260169884012 2 1 1 -6.80806676910993 LTS-041 chrX 154507174 154528189 21016 * CLIC2 NA 0 NA 0.789051611343463 26 0.104183277855016 2 NA NA -5.76951788571655 LTS-041 chrX 154528190 154580169 51980 * CLIC2 NA 0 NA 0.526010269422203 44 0.2793249185948 1 NA NA -5.76846759330121 LTS-041 chrX 154580170 154774986 194817 * TMLHE NA 0 NA 1.12579296926277 39 2.47871498803369 3 NA NA -5.76441703652172 LTS-041 chrY 4924430 5608782 684353 * PCDH11Y NA 0 NA 0.152194125352849 25 0.110526015037185 0 NA NA -11.6904269028078 LTS-041 chrY 13309514 21154528 7845015 * c(CD24, NLGN4Y-AS1, NLGN4Y, GYG2P1, NA, TTTY15, UTY, USP9Y, TTTY14, DDX3Y, TMSB4Y) NA 0 NA 0.954654616396615 23 1.12241864058963 2 NA NA -5.82147983829429 LTS-041